cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.9gd17/1
title: lap vs transanal for Hirschsprung's

description: Original data in RevMan 5.3 format used to generate meta-analysis statistics.
DOI: 10.5061/dryad.1nv6k/1
title: Mitochondrial DNA - Dipodomys deserti

description: Mitochondrial DNA control region sequences, 1000 base pairs, Dipodomys deserti, fasta
DOI: 10.5061/dryad.1nv6k/2
title: Mitochondrial DNA - Dipodomys merriami

description: Mitochondrial DNA control region sequences, 906 base pairs, Dipodomys merriami, fasta
DOI: 10.5061/dryad.1nv6k/3
title: Dipodomys merriami and deserti Read Mapping Output Files

description: This compressed archive directory contains the mapping files for each individual Dipodomys sample used in the RADseq analysis. Each file is in a sorted BAM format, which can easily be converted to SAM or many other desirable formats. These files have been placed into directories that indicate what species (D. deserti or D. merriami) and population (North or South) the individual sample comes from.
DOI: 10.5061/dryad.1nv6k/4
title: Dipodomys merriami and deserti Stacks Catalog Files

description: This compressed archive directory contains the complete catalog files for the entire Stacks analysis, including the batch catalog (batch_1...) and the individual sample catalog files (LVT...). All files are tab-delimited and are configured according to the pre-Stacks v. 1.20 formatting. File name extensions also reflect the Stacks naming scheme.
DOI: 10.5061/dryad.1nv6k/5
title: Dipodomys deserti Raw Sample Reads

description: This compressed archive contains individual Illumina read files for each Dipodomys deserti sample. These reads were generated by first excluding PCR clones and then parsing by unique barcodes.
DOI: 10.5061/dryad.1nv6k/6
title: Dipodomys merriami Raw Sample Reads

description: This compressed archive contains individual Illumina read files for each Dipodomys merriami sample. These reads were generated by first excluding PCR clones and then parsing by unique barcodes.
DOI: 10.5061/dryad.1nv6k/7
title: README_RADseq

description: Readme to accompany RADseq data.
DOI: 10.5061/dryad.5sn8m/9
title: Piper_BacterialOTU_by_sample_matrix

description: File	Piper_bacterial_OTU_sample_matrixThis file contains the raw OTU by sample matrix for all soil samples. OTU_names are explained in the file Piper_bacterial_OTU_taxonomy The samples were analysed as a subsampled dataset in which a total of 114 samples were analysed, standardised to 2550 reads each (singleton OTUs were removed from the dataset, therefore the abundance totals don't all add up to 2550) This is a matrix of each OTU at species level (0.03 dissimilarity) and its standardised (to 2550 reads) occurrence in each sample.
DOI: 10.5061/dryad.8q153/1
title: pedigree data for 6 captive populations

description: Tab delimited file containing pedigree information for 6 populations, bred at the Brookfield Zoo in Chicago, Illinois. Populations are listed under 'Treatment' and 'WildCaught' individuals were progenitors of all populations.  Other columns include: ID-unique ID numbers; SEX-m=male, f=female; F-inbreeding coefficient; GEN-generation; DAM-dam of individual; SIRE-sire of individual; GNAW-time spent gnawing; FLIP-time spent flipping.
DOI: 10.5061/dryad.p725k/1
title: PONE-D-14-21748R1

description: Explanation: Electromyography (EMG) data is displayed in 5 folders, that are named „EMG_Day1”, “EMG_Day3”, “EMG_Day9”, “EMG_Day27”, “EMG_Day81” respectively. Each folder contains data from rats that were phrenicotomized at the respective timepoint. The rats are identified by the following numbers:Day 1: 1409, 1410, 1411,1412,1413,1414Day3: 1815, 1816, 1817, 1818, 1819, 1820Day 9: 1821, 1822, 1823, 1824, 1825, 1826Day 27: 1720, 1721, 1722, 1723, 1725Day 81: 1484, 1485, 1486, 1487, 1488, 1489, 1490, 1491, 1492, 1493Folder "EMG" contains primary EMG data (e.g. bursts). According to the Materials and Methods Section in the Manuscript, a mean PeEn was created using the respective EMG bursts. The mean PeEn for each subject (sorted timepoint-wise) is displayed in the pdf-file "EMG_PeEN".Primary data is grouped timepoint-wise, including one folder for each subject. EMG bursts are provided as .wav-files. It has to be considered that the following terminology concerning the area of the diaphragm the EMG bursts (.wav-files) originated was used in the respective folders:"animal number_hinten" = "animal number_crural""animal number_mitte" = "animal number_mid-costal""animal number_vorne" = "animal number_sternal""animal_number_kl" = "animal number_non-denervated side"
DOI: 10.5061/dryad.8q153/2
title: microsatellite genotypes for 6 captive populations

description: Tab delimited file containing microsatellite genotypes for 11 loci.  Column labels include: SampleID-unique sample ID, Pop-label for each of 6 populations plus original 20 founders for all populations, Gen-generation the samples were taken from, followed by 22 locus specific columns.  Each locus is given in two columns (labeled A and B) to display both alleles for each individual.
DOI: 10.5061/dryad.8q153/3
title: dloop sequences from captive population

description: FASTA file containing 9 haplotypes identified.
DOI: 10.5061/dryad.8q153/4
title: simulations

description: Code, inputfiles, and output files from simulation of mean kinship, random mating, and selecting for docility in captive populations.  Code (simulations.R) was written for R, and has a number of package dependencies listed at the top.  Also required to run the code are the input cdv files: Weanded.csv lists number of individuals weaned in each population, founders.csv contains microsatellite genotypes for the populations founders, and mtDNA.csv contains the dloop haplotypes for each founder.  Docility.txt, MeanKinship.txt, MKplus.txt, and RandomMating.txt are all output files from running the simulation code.
DOI: 10.5061/dryad.926pq/1
title: Supplementary Data A. Table of haplotype, habitat and locality

description: Accession numbers, geographic locations and habitat types of CO1 samples of water beetles
DOI: 10.5061/dryad.n35j4/1
title: Full SNP dataset

description: Provided is the SNP dataset file for guppies distributed across northen trinidad.
DOI: 10.5061/dryad.q4545/1
title: ASFV_data

description: Dataset for the African Swine fever virus used in this study.
DOI: 10.5061/dryad.q4545/2
title: primates_data

description: This contains the dataset of the primates used in this study.
DOI: 10.5061/dryad.2jh32/1
title: LittorinaSaxatilis_AFLPs

description: The file LittorinaSaxatilis_AFLPs.txt correspond to the AFLP dataset used in this manuscript where we studied a hybrid zone of the marine gastropod Littorina saxatilis. It contains AFLP genotypes (1 for presence, 0 for absence, 9 for missing data). The first 4 columns contain ISLAND, ECOTYPE, POPULATION and INDIVIDUAL information. The rest of the columns represent the genotypes (0,1) of 1167 AFLP loci studied.The first row contains the loci names according to the analysis of outlier loci. The second row contains the loci names according to their primer combination and size in base pairs.The list of outlier loci detected for each island (RAMSÖ, RAMSHOLMEN)in this study is available in the file LittorinaSaxatilis_AFLPs_list_outliers.txt.The landmark data from the geometric morphometric analysis is available in the file LittorinaSaxatilis_LandmarkData.txt. The names of the INDIVIDUALS are the same as the names in the LittorinaSaxatilis_AFLPs.txt file.We studied E (exposed) and S (sheltered) Littorina saxatilis ecotypes from 2 islands from shores of Sweden. In each island we sampled one transect along the L. saxatilis hybrid zone which contained two parental populations (2S, 2E) at +27m and -27m from the hybrid population, two populations (1S, 1E) at +9m and -9m from the hybrid population and one hybrid population (H). LOCALITY: RAMSÖ, RAMSHOLMENECOTYPE: E (exposed), S (sheltered), H (hybrid)POPULATION: 2S, 1S, H, 1E, 2EINDIVIDUAL: This is the individual code. The sampling, AFLP analysis and genotyping have been performed by Johan Hollander (johan.hollander@biol.lu.se).
DOI: 10.5061/dryad.2jh32/2
title: LittorinaSaxatilis_AFLPs_list_outliers

description: The list of outlier loci detected for each island (RAMSÖ, RAMSHOLMEN)in this study is available in the file LittorinaSaxatilis_AFLPs_list_outliers.txt.
DOI: 10.5061/dryad.926pq/2
title: Supplementary Data B. Table of gmyc species traits

description: Ecological and genetic traits of GMYC groups
DOI: 10.5061/dryad.926pq/3
title: Supplementary Data C. Accession numbers of CO1-16S-18S

description: Accession numbers of downloaded sequences of CO1, 16S and 18S
DOI: 10.5061/dryad.926pq/4
title: GMYC Beast MCC tree

description: An MCC tree of GMYC groups in Newick format
DOI: 10.5061/dryad.926pq/5
title: Supplementary Data A. Table of haplotype, habitat and locality (with corrected names)

description: Accession numbers, geographic locations and habitat types of CO1 samples of water beetles (with corrected species names)
DOI: 10.5061/dryad.926pq/6
title: GMYC Beast MCC tree (with corrected names)

description: An MCC tree of GMYC groups in Newick format with corrected species names
DOI: 10.5061/dryad.t04v4/1
title: E_Sup_Mat

description: Contains data described in the paper
DOI: 10.5061/dryad.2jh32/3
title: LittorinaSaxatilis_LandmarkData

description: The landmark data from the geometric morphometric analysis is available in the file LittorinaSaxatilis_LandmarkData.txt. The names of the INDIVIDUALS are the same as the names in the LittorinaSaxatilis_AFLPs.txt file.
DOI: 10.5061/dryad.4gf03/2
title: perl script to simulate data and analyze with iBPP

description: This perl script can be used to reproduce all simulations in the article "Bayesian species delimitation combining multiple genes and traits in a unified framework".
DOI: 10.5061/dryad.5sn8m/8
title: Piper_BacterialOTU_taxonomy

description: File	Piper_bacterialOTU_taxonomy
This file summarizes the taxonomy of bacterial OTUs observed in this study. Taxonomic assignment of OTUs was achieved by BLAST comparison of the seed sequences against the Greengenes 2011 database (McDonald et al., 2012) by trimming the Greengenes sequences to the same region as the seed sequences to improve assignment (Werner et al., 2012).  Numbers in brackets indicate the confidence in which a particular name was assigned e.g. (100) is 100% confidence that the correct name was assigned	Some OTUs are unnamed at some level of classification (e.g. f__(100) indicates that an OTU belongs to a certain unnamed family). Alternatively, an OTU may be "unclassified" denoting that the species could not be fit with any known bacterial groups.
DOI: 10.5061/dryad.fm278/1
title: R.oldhamii_AFLP and MSAP

description: Here, we investigated the genetic and epigenetic variations and their ecological correlates in R. oldhamii. Genetic and epigenetic variations were surveyed using amplified fragment length polymorphism (AFLP) and methylation-sensitive amplification polymorphism (MSAP), respectively. For MSAP, we generated two binary matrices for analyses representing two informative patterns of methylation susceptible loci (i.e. MSAP-nonMeth for non-methylation and MSAP-Meth for methylation). In the MSAP-nonMeth dataset, the loci of methylation state (i) were coded with "1" and loci of methylation states (ii) and (iii) were coded with "0". Alternatively, the loci of methylation state (ii) were coded with "1" and loci of methylation states (i) and (iii) were coded with "0" in the MSAP-Meth dataset.
DOI: 10.5061/dryad.p1602/1
title: soil_metadata
DOI: 10.5061/dryad.p1602/2
title: Uclust_representative_sequences
DOI: 10.5061/dryad.p1602/3
title: OTU_table_classified_by_RDP.txt
DOI: 10.5061/dryad.0q524/1
title: Hcv_data
DOI: 10.5061/dryad.0015d/1
title: FledgingSuccess

description: Data for analysis of fledging success as detailed in the Methods section of the paper. Variables are explained in the ReadMe file.
DOI: 10.5061/dryad.0015d/2
title: RecruitmentSuccess

description: Data for analysis of recruitment success as detailed in the Methods section of the paper. Variables are explained in the ReadMe file.
DOI: 10.5061/dryad.0015d/3
title: MaleSuvival

description: Data for analysis of adult male survival as detailed in the Methods section of the paper. Variables are explained in the ReadMe file.
DOI: 10.5061/dryad.0015d/4
title: FemaleSurvival

description: Data for analysis of adult female survival as detailed in the Methods section of the paper. Variables are explained in the ReadMe file.
DOI: 10.5061/dryad.43100/1
title: Data of infectivity assays

description: Data of infectivity assays for each host species (Trichoplusia ni and Spodoptera exigua). Columns represent ‘experiment’ (experiment number; two replicates per host species), ‘treatment’ (infection with AcMNPV WT (0) or AcMNPV Δegt (1)), ‘virus concentration’ (log occlusion bodies per ml), ‘N’ (number of larvae infected), and ‘dead larvae’ (number of larvae that died of virus infection).
DOI: 10.5061/dryad.43100/2
title: Data of behavioural assays

description: Description: Data of behavioural assays, for each host species (Trichoplusia ni and Spodoptera exigua). First two sheets contain data of virus-infected larvae. Third and fourth sheet contain data of the mock treatment. Columns represent ‘individual’ (number), ‘time’ (hours post infection), ‘experiment’ (experiment number; two replicates for T. ni, four for S. exigua), ‘treatment’ (infection with AcMNPV WT (0), AcMNPV Δegt (1) or mock-treatment (2)), ‘stage’ (larval stage: 3rd instar (0), 4th instar (1), 5th instar (2) or pupae (3)), ‘death’ (status of larvae: alive (0) or dead (1)) and ‘position’ (position in jar, in mm).
DOI: 10.6084/m9.figshare.22310314
title: Dark roads aid movement but increase mortality of a generalist herbivore in the American Southwest

description: The data provided here are the final datasets used as input in the primary models created for the manuscript “Dark roads aid movement but increase mortality of a generalist herbivore in the American Southwest”. These data were pre-processed as described in the manuscript. They include values derived from GPS-collared mule deer. GPS location data are owned by the Utah Division of Wildlife Resources. In Utah, mule deer are a legally protected species. As such, raw location data are considered proprietary and protected under state law. Data are not publically available except through a Government Records Access and Management Act request (GRAMA), under provisions stipulated by the Utah Division of Wildlife Resources (https://wildlife.utah.gov/grama.html). <br> Data files are provided as CSVs, which can be opened in a variety of programs, including Microsoft Excel, RStudio, or any basic text editor. <br> README files sharing the name of each CSV are provided to describe their columns. Data Files Included: Input to the winter seasonal road crossing models: road_xing_winter573m.csv (README_road_xing_winter573m.txt) Input to the summer seasonal road crossing models: road_xing_summer573m.csv (README_road_xing_summer573m.txt) Input to the winter seasonal road mortality models: road_mortality_winter573m.csv (README_road_mortality_winter573m.txt) Input to the summer seasonal road mortality models: road_mortality_summer573m.csv (README_road_mortality_summer573m.txt)
DOI: 10.57745/c9fvcg
title: README.pdf

description: :unav
DOI: 10.57745/dthfs7
title: data.txt

description: Data used
DOI: 10.57745/ezrt4t
title: data.txt

description: Data used
DOI: 10.57745/m69w4k
title: Data set guide.pdf

description: :unav
DOI: 10.57745/qtxlat
title: R_script.R

description: R script used
DOI: 10.57745/ritwc3
title: script.R

description: R script used
DOI: 10.6084/m9.figshare.21842124
title: Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats

description: Raw and additional data for the article : "Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats "
DOI: 10.6084/m9.figshare.21842124.v1
title: Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats

description: Raw and additional data for the article : "Perinatal exposure to the fungicide ketoconazole alters hypothalamic control of puberty in female rats "
DOI: 10.5281/zenodo.7756124
title: Data on U.S. geopolitical relations with Latin America

description: GDELT part of the big data and access path; Data Mining Results; U.S. and Latin American countries data filtering results, etc.
DOI: 10.5281/zenodo.7756123
title: Data on U.S. geopolitical relations with Latin America

description: GDELT part of the big data and access path; Data Mining Results; U.S. and Latin American countries data filtering results, etc.
DOI: 10.6084/m9.figshare.22310296
title: WES LTL

description: WES of LTL in UKB
DOI: 10.6084/m9.figshare.22310296.v2
title: WES LTL

description: WES of LTL in UKB
DOI: 10.6084/m9.figshare.22310296.v3
title: WES LTL

description: WES of LTL in UKB
DOI: 10.6084/m9.figshare.20155127
title: The redox state of incipient oceanic subduction zones: An example from the Troodos ophiolite (Cyprus)

description: Supplementary documents of a paper submitted to JGR-Solid Earth
DOI: 10.6084/m9.figshare.20155127.v7
title: The redox state of incipient oceanic subduction zones: An example from the Troodos ophiolite (Cyprus)

description: Supplementary documents of a paper submitted to JGR-Solid Earth
DOI: 10.6084/m9.figshare.20155127.v6
title: The redox state of incipient oceanic subduction zones: An example from the Troodos ophiolite (Cyprus)

description: Supplementary documents of a paper submitted to JGR-Solid Earth
DOI: 10.6084/m9.figshare.21926407
title: Complex refractive index of crystalline quartz particles from UV to thermal infrared

description: Crystalline quartz is an important element of many materials and one of the major compounds of mineral dust. Thus, knowledge of its optical properties is essential for many applications, in particular for remote sensing techniques. However, despite the fact that crystalline quartz has been an object of study for many years using various experimental approaches, its optical properties and in particular its complex refractive indices (CRI) remain uncertain. The focus of this investigation is the determination of a new set of CRI of crystalline quartz particles retrieved from a methodology which has already demonstrated its efficiency on pure amorphous materials and volcanic ashes. The experimental set-up allows recording simultaneously size distribution (from 15 nm to 20 µm) of airborne particles and extinction spectra over a wide continuous spectral range from thermal infrared (650 cm<sup>−1</sup>) to UV (40,000 cm<sup>−1</sup>) with high spectral resolution (up to 0.5 cm<sup>−1</sup>). By associating these measurements and a numerical procedure coupling scattering theories, the single subtractive Kramers-Kronig relation, and an optimal estimation method in an iterative process, we precisely determine the real and imaginary parts of the CRI of crystalline SiO<sub>2</sub> with mean values of the uncertainties of 2.5% and 1.7%, respectively. Moreover, the use of these CRIs allows to simulate an extinction spectrum of another quartz sample very well, which shows their suitability as well as the good reproducibility of the whole process.
DOI: 10.6084/m9.figshare.21926412
title: Constant vs. cyclic flow when testing face masks and respirators as source control devices for simulated respiratory aerosols

description: SARS-CoV-2 spreads by infectious aerosols and droplets from the respiratory tract. Masks and respirators can reduce the transmission of infectious respiratory diseases by collecting these aerosols at the source. The ability of source control devices to block aerosols can be tested by expelling an aerosol through a headform using constant airflows, which are simpler, or cyclic airflows, which are more realistic but require more complex methods. Experiments with respirators found that using cyclic vs. constant flows affected the amount of aerosol inhaled, but similar comparisons have not been made for source control devices with exhaled aerosols. We measured the collection efficiencies for exhaled aerosols for two cloth masks, two medical masks with and without an elastic mask brace, a neck gaiter, and an N95 filtering facepiece respirator using 15 L/min and 85 L/min constant and cyclic flows and a headform with pliable skin. The collection efficiencies for the 15 L/min cyclic flow, 15 L/min constant flow, and 85 L/min constant flow were not significantly different in most cases. The apparent collection efficiencies for the 85 L/min cyclic flow were artificially increased by rebreathing and refiltration of the aerosol from the collection chamber. The collection efficiencies correlated well with the fit factors (ρ &gt; 0.95) but not the filtration efficiencies (ρ &lt; 0.54). Our results suggest that the aerosol collection efficiency measurements of source control devices are comparable when testing the devices using either constant or cyclic airflows and that the potential for aerosol rebreathing must be considered when conducting experiments.
DOI: 10.6084/m9.figshare.21926412.v1
title: Constant vs. cyclic flow when testing face masks and respirators as source control devices for simulated respiratory aerosols

description: SARS-CoV-2 spreads by infectious aerosols and droplets from the respiratory tract. Masks and respirators can reduce the transmission of infectious respiratory diseases by collecting these aerosols at the source. The ability of source control devices to block aerosols can be tested by expelling an aerosol through a headform using constant airflows, which are simpler, or cyclic airflows, which are more realistic but require more complex methods. Experiments with respirators found that using cyclic vs. constant flows affected the amount of aerosol inhaled, but similar comparisons have not been made for source control devices with exhaled aerosols. We measured the collection efficiencies for exhaled aerosols for two cloth masks, two medical masks with and without an elastic mask brace, a neck gaiter, and an N95 filtering facepiece respirator using 15 L/min and 85 L/min constant and cyclic flows and a headform with pliable skin. The collection efficiencies for the 15 L/min cyclic flow, 15 L/min constant flow, and 85 L/min constant flow were not significantly different in most cases. The apparent collection efficiencies for the 85 L/min cyclic flow were artificially increased by rebreathing and refiltration of the aerosol from the collection chamber. The collection efficiencies correlated well with the fit factors (ρ &gt; 0.95) but not the filtration efficiencies (ρ &lt; 0.54). Our results suggest that the aerosol collection efficiency measurements of source control devices are comparable when testing the devices using either constant or cyclic airflows and that the potential for aerosol rebreathing must be considered when conducting experiments.
DOI: 10.4121/45cae66c-7eb3-4e04-85a9-59f6e26cfbb9.v1
title: Supporting Data and Software for the paper: An instance-based learning approach for evaluating the perception of ride-hailing waiting time variability

description: The files included below are part of the CriticalMaaS research on ride-hailing and on-demand transport services. In this study, passengers' perception of waiting time variability was analysed. Respondents were presented with 32 hypothetical scenarios with immediate feedback on the performance of their selected alternatives. This feedback information was then incorporated into their decision-making for the following scenario.<br>For more information, the pre-print of the paper is available on: <em>https://arxiv.org/abs/2301.04982</em><br>Information on the data and model can be found in the README file and the python script below.