cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19311014.v1
title: RIN scores

description: RNA integrity number (RIN) scores of tissue sample used in MERFISH studies.
DOI: 10.6084/m9.figshare.5579620.v1
title: Supporting information for: REMAP: An online remote sensing application for land cover classification and monitoring

description: Supporting information for: REMAP: An online remote sensing application for land cover classification and monitoring<br>csv and json files for implementing land cover classifications using the remap, the remote ecosystem assessment and monitoring pipeline (https://remap-app.org/)<br>Nearmap aerial photograph courtesy of Nearmap Pty Ltd.<br>For further information see:<br>Murray, N.J., Keith, D.A., Simpson, D., Wilshire, J.H., Lucas, R.M. (accepted) REMAP: A cloud-based remote sensing application for generalized ecosystem classifications. Methods in Ecology and Evolution.<br><br>
DOI: 10.6084/m9.figshare.27612573.v1
title: Significant NO<sub>2</sub> Formation in Truck Exhaust Plumes and Its Association with Ambient O<sub>3</sub>: Evidence from Extensive Plume-chasing Measurements

description: This dataset includes two main sections: Quality Control and Supplemental Data. It includes five types of data: sampling time, pollutant concentrations, emission factors, meteorological conditions, and characteristics of test vehicles.
DOI: 10.6084/m9.figshare.23676414.v1
title: Platelets_TAVI_data

description: Analysis of potential influencing factors on decrease in platelet count after TAVI.
DOI: 10.6084/m9.figshare.25097240.v1
title: data_codeR2.zip

description: Data and code associated with the manuscript:Resasco J, Vázquez DP, McCain CM, and Olson SD. Was Clements wrong? Insights from plant distributions of his life-long study site, Pikes Peak. In revision <i>The American Naturalist</i>.
DOI: 10.6084/m9.figshare.26861824.v1
title: <b>Characterizing dynamics of building height in China from 2005 to 2020 based on GEDI, Landsat, and PALSAR data</b>

description: The unprecedented urbanization in China has driven rapid urban and rural development in recent decades. While existing studies have extensively focused on horizontal urban expansion, research on vertical urban expansion patterns in China remains limited. To address this gap, we proposed a Multi-Temporal Building Height estimation network (MTBH-Net) to estimate building heights at a 30 m spatial resolution in China for 2005, 2010, 2015, and 2020 by integrating Global Ecosystem Dynamics Investigation (GEDI), Landsat, and PALSAR data. Specifically, we introduced sample migration to generate reference building height data and utilized the Continuous Change Detection and Classification (CCDC) disturbance feature to ensure consistency in unchanged built-up areas. Validation with GEDI L2A V2 data demonstrated that MTBH-Net achieved RMSEs of 5.38 m, 5.73 m, 6.26 m, and 6.36 m for the respective years. Further validation with field-measured data and GF-7 building height data yielded RMSEs of 9.13 m and 10.99 m, respectively. The proposed 30-m China Multi-Temporal Building Height (CMTBH-30) dataset reveals an increase in average building heights in China from 10.48 m in 2005 to 11.37 m in 2020, reflecting an upward trend in urban development. Additionally, the standard deviation of building heights rose from 3.87 m in 2005 to 6.35 m in 2020, indicating increased height variation nationwide. Regional analysis from 2005 to 2020 shows notable vertical growth on newly expanded impervious surfaces in Macau (+14.9 m), Hong Kong (+13.9 m), and Guangdong (+13.5 m), while Chongqing (+3.6 m), Guizhou (+3.0 m), and Qinghai (+3.0 m) also experienced significant growth on stable impervious surfaces. Minimal growth was observed in Jilin, Heilongjiang, and Xinjiang. CMTBH-30 offers a more refined and accurate depiction of building heights, effectively capturing height variations and mitigating the underestimation of high-rise buildings. It fills the gap in multi-temporal building height estimation. Overall, this study provides a new dime
DOI: 10.6084/m9.figshare.28856330.v1
title: 中国粮食基地的农业生产转型、农民类型及化肥投入变化

description: Fertilizer inputs in China have surpassed the turning point of the environmental Kuznets curve (EKC); however, the understanding of its underlying causes remains limited. This paper aims to explore the mechanisms influencing fertilizer input changes from the perspective of agricultural production transition and develop a corresponding theoretical analytical framework. The results demonstrate that despite the heterogeneity in the amounts, structures, and methods of fertilizer application among farmer households—attributable to interactions of age, nonfarm livelihoods, farm size, land tenancy behaviors, and household economic conditions—there exists a clear ‘high-level’ interval consensus regarding fertilizer usage in the study area. The paper proposes three key paths through which agricultural production transition affects fertilization practices in China’s grain bases, namely, the path of ageing agricultural operating entities driven by capital-livelihood laws, the path of productionism determined by political-economic mechanisms, and the path of farm size structure evolution guided by policy, where the latter serving as a crucial driver of fertilizer inputs across the turning point of the EKC. Furthermore, the ‘metabolic cycle effect’ based on the combination of crop cultivation and livestock fattening in China’s smallholder farming has been overshadowed as the economy has evolved. Finally, this paper discusses the future potential for fertilizer reduction within the context of China’s unique agricultural production transition.
DOI: 10.6084/m9.figshare.5125459.v1
title: Supplementary Material for: hCLCA1 DNA Vaccine Suppresses Cell Hyperplasia and Mucin Expression of Goblet Cells in vitro

description: <b><i>Background:</i></b> Excessive airway mucus secretion is a remarkable trait of asthma. Mucus overproduction mainly resulted from an increase in goblet cell numbers, which causes considerable damage to health. However, effective therapeutic treatments are still lacking for mucus hypersecretion. Human calcium-activated chloride channel 1 (hCLCA1) has been identified to be predominantly responsible for mucus hypersecretion. <b><i>Objectives:</i></b> In this study, we investigated the effects of an hCLCA1 DNA vaccine on the control of mucus production and goblet cell proliferation using an in vitro model goblet cell line (NCI-H292). <b><i>Methods:</i></b> The effect of the hCLCA1 DNA vaccine on cell viability and proliferative activity of NCI-H292/hCLCA1 was analyzed by electron microscopy, MTT assay, and flow cytometry. Expression of mucins and MUC5AC, a major member of the mucin gene family in airway goblet cells, was assessed under hCLCA1 DNA vaccine challenges by periodic acid-Schiff staining, quantitative real-time PCR and Western blot, respectively, and the expression profile of granulocyte-macrophage colony-stimulating factor (GM-CSF), a critical cytokine in airway inflammation, was also examined by real-time PCR and immunocytochemistry. <b><i>Results:</i></b> Results showed that hCLCA1 overexpression caused high cell proliferation and mucin expression, whereas the hCLCA1 DNA vaccine could effectively reverse these abnormal effects. In addition, GM-CSF expression was highly induced by hCLCA1 overexpression and efficiently suppressed by hCLCA1 DNA vaccine. <b><i>Conclusions:</i></b> These results illustrate that the hCLCA1 DNA vaccine effectively inhibits cell hyperplasia and mucin gene expression of goblet cells, suggesting that the hCLCA1 DNA vaccine has potential value in the treatment of human asthma.
DOI: 10.6084/m9.figshare.14445315.v1
title: Supplementary Table 1.txt

description: Enhancer regions
DOI: 10.6084/m9.figshare.5930266.v1
title: Carnivora Metagenome data

description: Carnivora gut microbiomes, assembled contig fna and mapfile files as input files for MGRAST
DOI: 10.6084/m9.figshare.26395483.v1
title: Data tables for Detection of eQTL

description: This archive contains all files necessary to run related scripts on GitHub.
DOI: 10.6084/m9.figshare.14472951.v3
title: Application of Sentinel-1 radar data for mapping ice disturbance in a forested area - Supplemental material

description: This is the supplemental online material of Zoltán, L., Friedl, Z., Pacskó, V., Orbán, I., Tanács, E., Magyar B., Kristóf, D., & Standovár, T. (2021). <i>Application of Sentinel-1 radar data for mapping ice disturbance in a forested area.</i>
DOI: 10.6084/m9.figshare.12514187.v1
title: Supplementary Material for: Use Motives of Patients with Amphetamine-Type Stimulants Use Disorder and Attention-Deficit/Hyperactivity Disorder

description: <b><i>Introduction:</i></b> There is a frequent comorbidity of amphetamine-type stimulants (ATS) use disorders and attention-deficit/hyperactivity disorder (ADHD). The assumption that this patient group “self-medicate” suggests that there are different use motives for ATS addicted patients with and without ADHD. <b><i>Objective:</i></b> Our study investigates these potential differences in use motives. <b><i>Methods:</i></b> Within a mixed-method approach, we examined the use motives of adults with ATS use disorder with and without ADHD in the first and latest month of their use. For this purpose, we used the 12-item Amphetamine-Type Stimulants Motive Questionnaire (AMQ) and a mind mapping technique after verifying that these tools are applicable to adults with ADHD. <b><i>Results:</i></b> The mixed-method approach showed that enhancement motives were the most important motives in the first month of use (e.g., fun/kick/rush/desire, and curiosity/interest in the drug/appeal), and over time, the incidence of coping motives increased (e.g., repression and freeing the mind/not having to think/switching off). There were no differences between adults with and without ADHD in the AMQ data, while the qualitative data showed that adults with ADHD used ATS less often out of social motives. In particular, the results showed no differences in the coping dimension and, thus, did not suggest that self-medication is an important factor for patients with ADHD. <b><i>Conclusions:</i></b> Patients with and without ADHD show very similar motive patterns for ATS use. This indicates that ATS treatment programs addressing use motives do not necessarily have to be different for patients with and without ADHD.
DOI: 10.6084/m9.figshare.27633195.v1
title: Metatranscriptome_COPD

description: This dataset includes the processed abundance matrices for all BioCyc-derived metabolic pathways, and PFAMs with taxonomic break-down for 40 fecal samples from COPD patients sampled at the time of their lung cancer diagnosis.The dataset included comprehensive metadata on COPD-comorbidity and lung function parameters along with basic patient data.Citation:Dora D, Revisnyei P, Mihucz A, Kiraly P, Szklenarik G, Dulka E, Galffy G and Lohinai Z (2024) Metabolic pathways from the gut metatranscriptome are associated with COPD and respiratory function in lung cancer patients. Front. Cell. Infect. Microbiol. 14:1381170. doi: 10.3389/fcimb.2024.1381170
DOI: 10.6084/m9.figshare.1352064.v7
title: Biology lessons for schools using the fruit fly Drosophila

description: For more than 100 years the fruit fly <em>Drosophila</em> <em>melanogaster</em> has been at the forefront of biological research and thus provides highly refined conceptual understanding of biology. Accordingly, much of the core biology curriculum can be explained extremely well using flies, spiced up with exciting, simple and inexpensive experiments that are memorable, reflect contemporary research and provide students with clear comprehension. Here we provide readily tested school biology lessons in form of PowerPoint files which are supported by explanatory background information, risk assessments, lesson plans, instructions and any other additional information that may save teachers time and effort to set up these lessons in their own classes. Furthermore, we set up the droso4schools website (link below) which provides further support materials suitable for revision or homework tasks, or simply to enhance the learning experience. Further <em>Drosophila</em>-specific information and resources can be found under the second link given below. If you find our resources helpful for your teaching, please, help us by sending an informal email to Andreas.Prokop@manchester.ac.uk .
DOI: 10.6084/m9.figshare.22121447.v1
title: Supplementary Information 1: Bone microstructure parameters of Sciurus vulgaris fuscoater humeri

description: Raw bone microstructure data for 40 humeri of red squirrels (<i>Sciurus vulgaris fuscoater</i> ).
DOI: 10.5281/zenodo.15316076
title: On the Entropic Connection Between Perelman's Functional and Bianconi's Action

description: This article explores the conceptual and mathematical parallels between Perelman’s entropy functional in geometric analysis and Bianconi’s action in entropic quantum gravity. Historically, Perelman’s work on the Ricci flow revolutionized geometric analysis by providing tools to resolve the Poincar´e conjecture, while Bianconi’s entropic approaches emerged from information-theoretic formulations of quantum gravity. By establishing a correspondence through variable substitution and entropic principles, we demonstrate that both frameworks describe gradient flows aimed at minimizing geometric and informational ”disorder” respectively. The unified formalism bridges geometric flows and image processing, offering insights into emergent spacetime dynamics and machine learning. This synthesis extends the legacy of variational calculus in physics, connecting Thurston’s geometrization program with modern data-driven optimization paradigms
DOI: 10.5281/zenodo.15316077
title: On the Entropic Connection Between Perelman's Functional and Bianconi's Action

description: This article explores the conceptual and mathematical parallels between Perelman’s entropy functional in geometric analysis and Bianconi’s action in entropic quantum gravity. Historically, Perelman’s work on the Ricci flow revolutionized geometric analysis by providing tools to resolve the Poincar´e conjecture, while Bianconi’s entropic approaches emerged from information-theoretic formulations of quantum gravity. By establishing a correspondence through variable substitution and entropic principles, we demonstrate that both frameworks describe gradient flows aimed at minimizing geometric and informational ”disorder” respectively. The unified formalism bridges geometric flows and image processing, offering insights into emergent spacetime dynamics and machine learning. This synthesis extends the legacy of variational calculus in physics, connecting Thurston’s geometrization program with modern data-driven optimization paradigms
DOI: 10.5281/zenodo.15316108
title: test record

description: File uploaded via Zenodo API script: test_records.zip
DOI: 10.5281/zenodo.15316109
title: test record

description: File uploaded via Zenodo API script: test_records.zip
DOI: 10.6084/m9.figshare.13536944.v1
title: Supplementary Material for: Multiple Linear Regression Allows Weighted Burden Analysis of Rare Coding Variants in an Ethnically Heterogeneous Population

description: Weighted burden analysis has been used in exome-sequenced case-control studies to identify genes in which there is an excess of rare and/or functional variants associated with phenotype. Implementation in a ridge regression framework allows simultaneous analysis of all variants along with relevant covariates, such as population principal components. In order to apply the approach to a quantitative phenotype, a weighted burden score is derived for each subject and included in a linear regression analysis. The weighting scheme is adjusted in order to apply differential weights to rare and very rare variants and a score is derived based on both the frequency and predicted effect of each variant. When applied to an ethnically heterogeneous dataset consisting of 49,790 exome-sequenced UK Biobank subjects and using body mass index as the phenotype, the method produces a very inflated test statistic. However, this is almost completely corrected by including 20 population principal components as covariates. When this is done, the top 30 genes include a few which are quite plausibly associated with the phenotype, including <i>LYPLAL1</i> and <i>NSDHL</i>. This approach offers a way to carry out gene-based analyses of rare variants identified by exome sequencing in heterogeneous datasets without requiring that data from ethnic minority subjects be discarded. This research has been conducted using the UK Biobank Resource.
DOI: 10.6084/m9.figshare.27922128.v1
title: Files associated with Figure 3 and Supplementary Figure 1 of the manuscript

description: PhyloPhlAn3-generated phylogenetic tree in newick format, along with annotation files for use with iToL.Distance matrix showing amino acid identity of contiguous concatenated transporter-LeupA-LeupB-LeupC-LeupD sequences.Fasta file of concatenated transporter-LeupA-LeupB-LeupC-LeupD sequences (each gene separated by NNNNNNNNNN for each genome analysed).MAFFT-generated alignment of concatenated transporter-LeupA-LeupB-LeupC-LeupD sequences.IQ-TREE output for aligned concatenated transporter-LeupA-LeupB-LeupC-LeupD sequences
DOI: 10.6084/m9.figshare.26965159.v1
title: The PainMonit Database: An Experimental and Clinical Physiological Signal Dataset for Automated Pain Recognition

description: Access to large amounts of data is essential for successful machine learning research. However, there is insufficient data for many applications, as data collection is often challenging and time-consuming. The same applies to automated pain recognition, where algorithms aim to learn associations between a level of pain and behavioural or physiological responses. Although machine learning models have shown promise in improving the current gold standard of pain monitoring (self-reports) only a handful of datasets are freely accessible to researchers. The PainMonit Database was created for automated pain detection using physiological data. The dataset consists of two parts, as pain can be perceived differently depending on its underlying cause. On the one hand, pain was triggered by artificially applied heat stimuli in an experimental study protocol. On the other hand, physiological responses to pain during a physiotherapy session were also recorded.
DOI: 10.6084/m9.figshare.5593288.v1
title: Toxoplasmosis, but not borreliosis, is positively associated with the rates of autism, schizophrenia, attention deficit hyperactivity disorder, Asperger syndrome, antisocial personality disorder, obsessive compulsive disorder, and anxiety disorder: A cross-sectional survey on 46 thousand subjects

description: Raw data to the paper: <b>Toxoplasmosis, but not borreliosis, is positively associated with the rates of autism, schizophrenia, attention deficit hyperactivity disorder, Asperger syndrome, antisocial personality disorder, obsessive compulsive disorder, and anxiety disorder: A cross-sectional survey on 46 thousand subjects</b><b></b>
DOI: 10.6084/m9.figshare.22308751.v1
title: THE RELATIONSHIP BETWEEN COMPETENCE, AUTONOMY, AND RELATEDNESS SATISFACTION AND DISINTEREST IN PHYSICAL EDUCATION CLASSES IN ELEMENTARY SCHOOL

description: ABSTRACT: This study shows causes for the lack of interest of sixth and ninth-grade students in physical education classes based on the satisfaction of Basic Psychological Needs (BPN) and by the interpretation of reasons given by students for being apart of subject classes. The sequential mixed method was used. The sample of the initial phase of quantitative characteristics (extensive) was composed of 153 students, followed by the intensive phase of qualitative nature, which had 12 students. The result shows that girls feel less attended to their BPN compared to boys, in sixth grade, with an emphasis on the competence dimension, expanding to autonomy and relatedness in the ninth grade. In line with the research objectives, this study indicates that lack of ability (competence), lack of diversification of contents beyond popular coletive sports (competence/autonomy), and lack of opportunities to participate in decision-making (autonomy) are some of the reasons that lead to students to develop disinterest in physical education classes.
DOI: 10.6084/m9.figshare.25648788.v3
title: blank

description: blank
DOI: 10.15468/dl.ccb3jj
title: Occurrence Download

description: A dataset containing 382 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paramisgurnus dabryanus Dabry de Thiersant, 1872"
 ]
}

 The dataset includes 382 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038871-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrenzm
title: Occurrence Download

description: A dataset containing 4874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Material sample, Material citation, Observation)",
 "Country is one of (France, Netherlands, Germany, Austria, Ukraine, Belgium, Denmark, Russian Federation, Serbia, Croatia)",
 "OccurrenceStatus is Present",
 "TaxonKey is Misgurnus fossilis (Linnaeus, 1758)",
 "Year 1000-2024"
 ]
}

 The dataset includes 4874 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028747-240626123714530/datasets/export for details.
DOI: 10.15468/dl.2b9x6y
title: Occurrence Download

description: A dataset containing 10137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Occurrence evidence, Living Specimen, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Misgurnus anguillicaudatus (Cantor, 1842)",
 "Year 2000-2024"
 ]
}

 The dataset includes 10137 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032250-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23684181.v1
title: Data journal coverage

description: This folder contains
DOI: 10.6084/m9.figshare.4635307.v1
title: Optogenetic stimulation of thalamic neurons using chr-2

description: Optogenetic stimulation of thalamic neurons labelled with channelrhodopsin-2 causes evoked activity in habenula neurons (Figure 9).<br>Access all data here : Data includes raw tiff files, Images of cells segmented and figures https://github.com/seethakris/Optogeneticstimulationofthalamus.git<br>
DOI: 10.6084/m9.figshare.26835781.v2
title: Supplemental Material for Jensen & Ault (2024), <i>Geology</i>

description: The following data items supporting Jensen and Ault (2024) are included in this Figshare:Supplemental Material text and figures (included as a Word document)Supplemental Material tables S1 and S2 (included as an Excel document)Processed Raman spectra shown in Figure S3 (as .txt files)EBSD data (as CRC files)Generalized input file for CRC data using the Matlab-based MTEX EBSD processing software (Mainprice et al., 2015)<br>