cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zcgd8e
title: Occurrence Download

description: A dataset containing 1831348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Alcedo atthis (Linnaeus, 1758))"
 ]
}

 The dataset includes 1831348 records from 2131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031534-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.13638.60487
title: 25th Cavalry (Frontier Force)
DOI: 10.13140/rg.2.2.10047.23207
title: Publishers: Scientific Mind, Kyiv, Ukraine
DOI: 10.13140/rg.2.2.31647.89765
title: Strongylosoma stigmatosum
DOI: 10.13140/rg.2.2.29236.17286
title: Postholecistectomijski ikterus kao posledica arteficijalnih lezija
DOI: 10.13140/rg.2.2.18602.95681
title: Data-LSPM-instances-2020
DOI: 10.15468/qeaq5j
title: First confirmed record of adult Pacific squaretail, Tetragonurus pacificus (Teleostei: Perciformes: Stromateoidei) from the Indian Ocean, with an expanded description

description: This dataset contains the digitized treatments in Plazi based on the original journal article Aluwihare, Yasmin C., Fernando, Sara, Gunasinghe, Malsha S., Ranasinghe, Cherika, Ranjula, M. A. S., Weerakoon, Thiranya, Haputhantri, Sujeewa S. K., Jayasinghe, Prabath K., Lisher, Mark W., Psomadakis, Peter N. (2025): First confirmed record of adult Pacific squaretail, Tetragonurus pacificus (Teleostei: Perciformes: Stromateoidei) from the Indian Ocean, with an expanded description. Zootaxa 5604 (1): 41-51, DOI: 10.11646/zootaxa.5604.1.4, URL: https://doi.org/10.11646/zootaxa.5604.1.4AbstractThree adult individuals (129–133 mm SL) of the rare Pacific squaretail Tetragonurus pacificus Abe were collected during a pelagic trawl by the R / V Dr. Fridtjof Nansen off the coast of Sri Lanka in July 2018. The specimens represent the first confirmed adult records from Sri Lankan waters and the entire Indian Ocean, where previously only early juveniles (9–21 mm SL) were recorded from the region nearly seven decades ago. Taxonomic identification of the specimens was validated through an integrated approach combining morphological and molecular analyses, resulting in an expanded description of T. pacificus and a revision of diagnostic characters used to distinguish it from its congeners. Analysis of the COI gene revealed clear genetic divergence between T. pacificus and its two congeneric species, with pairwise distances of 8.6% from T. cuvieri Risso and 14.3% from T. atlanticus Lowe, offering new insights into the phylogenetic relationships within the genus Tetragonurus. A revised key to the species of Tetragonurus is also provided, informed by the newly available material of T. pacificus.
DOI: 10.15468/qpc5pp
title: Luisumaoppia molinoensis gen. nov., sp. nov. (Acari, Oribatida, Oppiidae) from Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ermilov, Sergey G. (2022): Luisumaoppia molinoensis gen. nov., sp. nov. (Acari, Oribatida, Oppiidae) from Peru. Zootaxa 5105 (1): 131-138, DOI: 10.11646/zootaxa.5105.1.5AbstractA new oribatid mite genus, Luisumaoppia gen. nov. (Oribatida, Oppiidae, Oppiinae), with Luisumaoppia molinoensis sp. nov. as type species, is described from soil and leaf litter in primary mountain cloud forest in Andes, Peru. It differs from the other genera of Oppiidae by the presence of modified (nearly straight), directed backwards leg claws located on bent pretarsi. The relationships of Luisumaoppia gen. nov. with the related genera in Oppiinae are presented.
DOI: 10.25345/c5891245h
title: MassIVE MSV000100327 - Early-activated extracellular matrix proteins shape metabolic and spatial dynamics of the kidney fibrotic microenvironment
title: The fibrotic kidney microenvironment is shaped by cellular crosstalk, extracellular matrix (ECM) remodeling, metabolic reprogramming, and spatial heterogeneity. While late-stage ECM changes dominate fibrosis, the role of early-activated matrix proteins remains unclear. Here, we identified Ecm1 as an early regulator of kidney remodeling. Global Ecm1 knockout mice develop spontaneous fibrosis and early death, whereas Ecm1 levels markedly increase in biofluids during CKD. Targeting Ecm1 by AAV9-mediated knockdown or fibroblast-specific deletion substantially reduces renal fibrosis. Mechanistically, Ecm1 deletion disrupts the integrin a2b1-RhoC axis, suppressing Yap activity. Reduced Yap nuclear translocation and diminished Yap-Tead4 complex formation relieve Tead4-mediated repression of Pgc1a, enhancing mitochondrial OXPHOS and promoting repair. Spatial transcriptomics and proteomics confirm this mechano-metabolic pathway, revealing mitochondrial reprogramming in tubules that counteracts fibrotic progression. Notably, fibroblast Yap inactivation limits aberrant activation without impairing their OXPHOS. This selective ECM-mitochondrial crosstalk uncovers a mechano-metabolic pathway where mitochondrial shifts drive defense against kidney fibrosis.
DOI: 10.5281/zenodo.17756034
title: SuXXES Event Logs: Synthetic and ERP-Based Process Data with Integrated Sustainability Data

description: This dataset contains four event logs showcasing the application of SuXXES, an extension of the XES standard that integrates sustainability-related attributes into event logs. The event logs cover diverse scenarios to illustrate both synthetic and real-world use cases:





Synthetic Production Process Event LogA fully simulated event log generated with Python (SimPy, PM4Py), modeling a simplified wooden chair production process enriched with sustainability aspects. This event log serves as an exemplary use case for representing sustainability information within event data.




ERP-Based Event LogsThree event logs extracted from a real SAP S/4HANA system, demonstrating the application of SuXXES on realistic process data with inherent variability and complexity. Each event log includes authentic ERP transactions generated through playing ERPsim and enriched with sustainability attributes. These logs represent the core business processes of a fictional muesli production company: Procure-to-Pay, Make-to-Stock, and Order-to-Cash.



All logs comply with the IEEE 1849-2023 XES standard, validated against the official XML schema, and assessed for data quality. This dataset is particularly suited for research in process mining, with a focus on sustainability analysis.
DOI: 10.5281/zenodo.17756035
title: SuXXES Event Logs: Synthetic and ERP-Based Process Data with Integrated Sustainability Data

description: This dataset contains four event logs showcasing the application of SuXXES, an extension of the XES standard that integrates sustainability-related attributes into event logs. The event logs cover diverse scenarios to illustrate both synthetic and real-world use cases:





Synthetic Production Process Event LogA fully simulated event log generated with Python (SimPy, PM4Py), modeling a simplified wooden chair production process enriched with sustainability aspects. This event log serves as an exemplary use case for representing sustainability information within event data.




ERP-Based Event LogsThree event logs extracted from a real SAP S/4HANA system, demonstrating the application of SuXXES on realistic process data with inherent variability and complexity. Each event log includes authentic ERP transactions generated through playing ERPsim and enriched with sustainability attributes. These logs represent the core business processes of a fictional muesli production company: Procure-to-Pay, Make-to-Stock, and Order-to-Cash.



All logs comply with the IEEE 1849-2023 XES standard, validated against the official XML schema, and assessed for data quality. This dataset is particularly suited for research in process mining, with a focus on sustainability analysis.
DOI: 10.15468/tfx5f2
title: Two new species of Plagiostriata (Bacillariophyaceae) from sand sediments of southern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Weiyu, Wang, Zhen, Zhuo, Suqing, Gao, Yahui, Li, Xuesong, Liang, Junrong, Chen, Changping (2022): Two new species of Plagiostriata (Bacillariophyaceae) from sand sediments of southern China. Phytotaxa 556 (1): 87-93, DOI: 10.11646/phytotaxa.556.1.7, URL: http://dx.doi.org/10.11646/phytotaxa.556.1.7AbstractThis study describes two new species of Plagiostriata: P. xiapuensis sp. nov. and P. pingtanensis sp. nov., both collected in the intertidal zone of Fujian Province, China. This is the first record of species in the genus Plagiostriata in China. The morphological characteristics of the two new species are discussed in detail using light and scanning electron microscopy. Plagiostriata xiapuensis sp. nov. is characterized by its lower stria density and simple volae-covered areolae compared to the higher stria density, small and complex volae–covered areolae in P. pingtanensis sp. nov. The morphological characteristics of these two species significantly differ from those of P. goreensis and P. baltica in sternum and areolae features, which is also discussed herein.
DOI: 10.15468/dl.9edygh
title: Occurrence Download

description: A dataset containing 825 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aetomylaeus bovinus (Geoffroy Saint-Hilaire, 1817)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 825 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008374-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehztby
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acanthoscelis ruficornis (Fabricius, 1801))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008371-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3qerh
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.64414 -13.34924,70.64414 -13.34924,70.64414 16.34924,-3.64414 16.34924,-3.64414 -13.34924))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sida tenuicarpa Vollesen",
 "Year 2010-2024"
 ]
}

 The dataset includes 58 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008372-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6392s
title: Occurrence Download

description: A dataset containing 3771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Felis catus Linnaeus, 1758"
 ]
}

 The dataset includes 3771 records from 273 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008373-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qqr9c
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allopterigeron Dunlop"
 ]
}

 The dataset includes 239 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008376-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26600254
title: Additional file 14 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 14: Table S8. Differentially expressed genes between reprogrammed platelet-erythroid-B cell clones and new myeloid clones. Full list of DE genes between reprogrammed platelet-erythroid-Bcelland newly emerged myeloid clonesupon platelet depletion using deseq2.
DOI: 10.6084/m9.figshare.26600173
title: Additional file 1 of Genome-wide identification and expression analysis of the AUX/IAA gene family in turnip (Brassica rapa ssp. rapa)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26600224
title: Additional file 5 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 5: Table S3. Pearson correlation between barcode composition in peripheral blood lineages. Pearson correlation coefficient and p value for plots in Figure 2F-I, 4B-E, 6B-D calculated using corrplot r package.
DOI: 10.15468/dl.877nys
title: Occurrence Download

description: A dataset containing 369754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((173.98115 -36.2749,174.05512 -36.42283,174.85211 -36.44014,174.82327 -36.26486,174.75671 -36.23379,174.69458 -36.17167,174.6613 -36.12064,174.63246 -36.06184,174.59363 -36.00415,174.52485 -35.98862,174.48824 -35.94646,174.62612 -35.88951,174.59537 -35.72458,174.32279 -35.6515,174.17839 -35.61628,174.00581 -35.60571,173.798 -35.6515,173.57611 -35.75011,173.69939 -35.94735,173.80857 -36.11289,173.98115 -36.2749))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 369754 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066567-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26600215
title: Additional file 2 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 2: Table S1. A. 2-way ANOVA test with Tukey’s multiple comparisons test correction for barcode read count in unequally mixed samples retrieved from cDNA or gDNA (data shown in Fig. 1C). B. Cell numbers for nucleated and anucleated cell populations used for barcode retrieval. The purity for auncleate cells (% of CD45.1+cells and Ter119+ for P-platelets, �45.1+cells and CD150+CD41+ cells for E-red blood cells) was evaluated by FACS.
DOI: 10.6084/m9.figshare.26600233.v1
title: Additional file 7 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 7: Table S4. Numbers of eGFP+ LT-HSC, MkP and CFU-E cells recovered per mouse using Smart-seq2 protocol, which had over 50,000 reads/cell and less than 10% mitochondrial gene content, barcode read count &gt; 3.
DOI: 10.6084/m9.figshare.26600224.v1
title: Additional file 5 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 5: Table S3. Pearson correlation between barcode composition in peripheral blood lineages. Pearson correlation coefficient and p value for plots in Figure 2F-I, 4B-E, 6B-D calculated using corrplot r package.
DOI: 10.6084/m9.figshare.26600263.v1
title: Additional file 17 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 17: Table S10. Staining panels for BM cell populations including antibody clone and conjugate.
DOI: 10.6084/m9.figshare.26600215.v1
title: Additional file 2 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 2: Table S1. A. 2-way ANOVA test with Tukey’s multiple comparisons test correction for barcode read count in unequally mixed samples retrieved from cDNA or gDNA (data shown in Fig. 1C). B. Cell numbers for nucleated and anucleated cell populations used for barcode retrieval. The purity for auncleate cells (% of CD45.1+cells and Ter119+ for P-platelets, �45.1+cells and CD150+CD41+ cells for E-red blood cells) was evaluated by FACS.
DOI: 10.6084/m9.figshare.26600233
title: Additional file 7 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 7: Table S4. Numbers of eGFP+ LT-HSC, MkP and CFU-E cells recovered per mouse using Smart-seq2 protocol, which had over 50,000 reads/cell and less than 10% mitochondrial gene content, barcode read count &gt; 3.
DOI: 10.6084/m9.figshare.26600239.v1
title: Additional file 9 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 9: Table S5. Clone type overlap between mature anucleated cells and their bone marrow progenitors. A. Types of clones found in LT-HSC and PB, Progenitors and PBor in all 3 LT-HSC+Progenitors+PB, clone classification based on their output in PB, clone type name as in Fig.3I. B. Numbers of clones found in LT-HSC, Progenitor, LT-HSC and Progenitors, LT-HSC and PB, Progenitors and PBor in all 3 LT-HSC+Progenitors+PBto consider the clone as present in PB it had to contribute &gt;0.089% to a lineage at 2 time points, otherwise clone was excluded from the analysis.
DOI: 10.6084/m9.figshare.26600221
title: Additional file 4 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 4: Table S2. Normalised barcode counts in PB and BM. Barcode counts were retrieved using published pipeline. Counts were normalised per 1000 and expressed as a fraction of total. Top 90% barcodes contributing to PB were included in the analysis.
DOI: 10.6084/m9.figshare.26600239
title: Additional file 9 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 9: Table S5. Clone type overlap between mature anucleated cells and their bone marrow progenitors. A. Types of clones found in LT-HSC and PB, Progenitors and PBor in all 3 LT-HSC+Progenitors+PB, clone classification based on their output in PB, clone type name as in Fig.3I. B. Numbers of clones found in LT-HSC, Progenitor, LT-HSC and Progenitors, LT-HSC and PB, Progenitors and PBor in all 3 LT-HSC+Progenitors+PBto consider the clone as present in PB it had to contribute &gt;0.089% to a lineage at 2 time points, otherwise clone was excluded from the analysis.
DOI: 10.6084/m9.figshare.26600251
title: Additional file 13 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 13: Table S7. Differentially expressed genes between reprogrammed platelet-erythroid and multipotent clones. Full list of DE genes between reprogrammed platelet-erythroidand multipotent clonesupon platelet depletion using deseq2 and full list of enriched processes using DAVID bioinformatics [57].
DOI: 10.6084/m9.figshare.26600254.v1
title: Additional file 14 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 14: Table S8. Differentially expressed genes between reprogrammed platelet-erythroid-B cell clones and new myeloid clones. Full list of DE genes between reprogrammed platelet-erythroid-Bcelland newly emerged myeloid clonesupon platelet depletion using deseq2.
DOI: 10.6084/m9.figshare.26600245.v1
title: Additional file 11 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 11: Table S6. Differentially expressed genes between HSC producing only progenitors or progenitors and mature anucleate blood cells. List of DE genes (generated using deseq2 [56] between LT-HSC clones producing only progenitors or giving rise to progenitors and mature PB progeny.
DOI: 10.6084/m9.figshare.26600251.v1
title: Additional file 13 of Panhematopoietic RNA barcoding enables kinetic measurements of nucleate and anucleate lineages and the activation of myeloid clones following acute platelet depletion

description: Additional file 13: Table S7. Differentially expressed genes between reprogrammed platelet-erythroid and multipotent clones. Full list of DE genes between reprogrammed platelet-erythroidand multipotent clonesupon platelet depletion using deseq2 and full list of enriched processes using DAVID bioinformatics [57].
DOI: 10.6084/m9.figshare.26600038
title: Additional file 1 of Perfectionism and binge eating association: a systematic review and meta-analysis

description: Additional file 1: Dataset.
DOI: 10.6084/m9.figshare.26600038.v1
title: Additional file 1 of Perfectionism and binge eating association: a systematic review and meta-analysis

description: Additional file 1: Dataset.
DOI: 10.34740/kaggle/dsv/9173826
title: Mahanagar Yatayat Transport Dataset
DOI: 10.15468/dl.uccxby
title: Occurrence Download

description: A dataset containing 3402915 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passer montanus (Linnaeus, 1758)"
 ]
}

 The dataset includes 3402915 records from 1601 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066520-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83kgcb
title: Occurrence Download

description: A dataset containing 437214 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Phleum pratense L.)"
 ]
}

 The dataset includes 437214 records from 2254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017146-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.