cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id326402.1
title: StrainInfo SI-ID 326402.1

description: StrainInfo dataset 326402 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.11955175
title: Supporting data for "Chromatin conformation and histone modification profiling across human kidney anatomic regions"

description: Here we deposit supporting data for our manuscript entitled "Chromatin conformation and histone modification profiling across human kidney anatomic regions".



donor_info.pdf: Additional clinical information of the donor involved in the study

Large zip files with names starting as "hic": Juicer Hi-C outputs aligned with hg38 genome



Note: hg19 alignment outputs are available at GEO.



hg19_loop_domain.zip: Hi-C chromatin contact domain finding results with Arrowhead and chromatin loop finding results with HiCCUPs (implemented in Juicer tools), aligned with hg19 genome

hg38_loop_domain.zip: Hi-C chromatin contact domain finding results with Arrowhead and chromatin loop finding results with HiCCUPs (implemented in Juicer tools), aligned with hg38 genome

CUTRUN_peak_hg19.tar.gz: CUT&RUN peaks.stringent.bed data outputs generated by hg19 alignment

CUTRUN_peak_hg38.tar.gz: CUT&RUN peaks.stringent.bed data outputs generated by hg38 alignment

CUTRUN_bigwig_hg38.tar.gz: CUT&RUN bigwig outputs generated by hg38 alignment



Note: hg19 alignment outputs are available at GEO.



CUTRUN_overlapped_peaks.xlsx: Overlaps between H3K27me3 and H3K4me3 in each anatomical region. Peaks were loaded from ‘.peaks.stringent.bed’ files in R and converted to GRanges objects using package ‘GenomicRanges’. R function ‘intersect’ was used to calculate the overlap between two GRanges objects, represented as each row in the table.



Here we list the details of overlaps between H3K27me3 and H3K4me3 in each anatomical region, as well as overlaps for each of the histone markers across anatomical regions.
DOI: 10.60712/si-id326473.1
title: StrainInfo SI-ID 326473.1

description: StrainInfo dataset 326473 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326474.1
title: StrainInfo SI-ID 326474.1

description: StrainInfo dataset 326474 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326475.1
title: StrainInfo SI-ID 326475.1

description: StrainInfo dataset 326475 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326476.1
title: StrainInfo SI-ID 326476.1

description: StrainInfo dataset 326476 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.7in6xj
title: Occurrence Download

description: A dataset containing 55469 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psarocolius decumanus (Pallas, 1769)"
 ]
}

 The dataset includes 55469 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032140-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id326325.1
title: StrainInfo SI-ID 326325.1

description: StrainInfo dataset 326325 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326326.1
title: StrainInfo SI-ID 326326.1

description: StrainInfo dataset 326326 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326327.1
title: StrainInfo SI-ID 326327.1

description: StrainInfo dataset 326327 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326328.1
title: StrainInfo SI-ID 326328.1

description: StrainInfo dataset 326328 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326403.1
title: StrainInfo SI-ID 326403.1

description: StrainInfo dataset 326403 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326404.1
title: StrainInfo SI-ID 326404.1

description: StrainInfo dataset 326404 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326405.1
title: StrainInfo SI-ID 326405.1

description: StrainInfo dataset 326405 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326477.1
title: StrainInfo SI-ID 326477.1

description: StrainInfo dataset 326477 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326478.1
title: StrainInfo SI-ID 326478.1

description: StrainInfo dataset 326478 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326479.1
title: StrainInfo SI-ID 326479.1

description: StrainInfo dataset 326479 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326329.1
title: StrainInfo SI-ID 326329.1

description: StrainInfo dataset 326329 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326330.1
title: StrainInfo SI-ID 326330.1

description: StrainInfo dataset 326330 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326331.1
title: StrainInfo SI-ID 326331.1

description: StrainInfo dataset 326331 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326406.1
title: StrainInfo SI-ID 326406.1

description: StrainInfo dataset 326406 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.34703/gzx1-9v95/xz03r7/yc3fk3
title: nLC-TIMS-ToF_Recombinant_rep1

description: :unav
DOI: 10.60712/si-id326407.1
title: StrainInfo SI-ID 326407.1

description: StrainInfo dataset 326407 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326408.1
title: StrainInfo SI-ID 326408.1

description: StrainInfo dataset 326408 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326480.1
title: StrainInfo SI-ID 326480.1

description: StrainInfo dataset 326480 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326481.1
title: StrainInfo SI-ID 326481.1

description: StrainInfo dataset 326481 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326482.1
title: StrainInfo SI-ID 326482.1

description: StrainInfo dataset 326482 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326483.1
title: StrainInfo SI-ID 326483.1

description: StrainInfo dataset 326483 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326332.1
title: StrainInfo SI-ID 326332.1

description: StrainInfo dataset 326332 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.11955174
title: Supporting data for "Chromatin conformation and histone modification profiling across human kidney anatomic regions"

description: Here we deposit supporting data for our manuscript entitled "Chromatin conformation and histone modification profiling across human kidney anatomic regions".



donor_info.pdf: Additional clinical information of the donor involved in the study

Large zip files with names starting as "hic": Juicer Hi-C outputs aligned with hg38 genome



Note: hg19 alignment outputs are available at GEO.



hg19_loop_domain.zip: Hi-C chromatin contact domain finding results with Arrowhead and chromatin loop finding results with HiCCUPs (implemented in Juicer tools), aligned with hg19 genome

hg38_loop_domain.zip: Hi-C chromatin contact domain finding results with Arrowhead and chromatin loop finding results with HiCCUPs (implemented in Juicer tools), aligned with hg38 genome

CUTRUN_peak_hg19.tar.gz: CUT&RUN peaks.stringent.bed data outputs generated by hg19 alignment

CUTRUN_peak_hg38.tar.gz: CUT&RUN peaks.stringent.bed data outputs generated by hg38 alignment

CUTRUN_bigwig_hg38.tar.gz: CUT&RUN bigwig outputs generated by hg38 alignment



Note: hg19 alignment outputs are available at GEO.



CUTRUN_overlapped_peaks.xlsx: Overlaps between H3K27me3 and H3K4me3 in each anatomical region. Peaks were loaded from ‘.peaks.stringent.bed’ files in R and converted to GRanges objects using package ‘GenomicRanges’. R function ‘intersect’ was used to calculate the overlap between two GRanges objects, represented as each row in the table.



Here we list the details of overlaps between H3K27me3 and H3K4me3 in each anatomical region, as well as overlaps for each of the histone markers across anatomical regions.
DOI: 10.60712/si-id326333.1
title: StrainInfo SI-ID 326333.1

description: StrainInfo dataset 326333 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326334.1
title: StrainInfo SI-ID 326334.1

description: StrainInfo dataset 326334 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326335.1
title: StrainInfo SI-ID 326335.1

description: StrainInfo dataset 326335 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326409.1
title: StrainInfo SI-ID 326409.1

description: StrainInfo dataset 326409 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326410.1
title: StrainInfo SI-ID 326410.1

description: StrainInfo dataset 326410 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.12019457
title: Dataset for publication: "Exploring ORCID adoption and metadata presence in Spain's research landscape"

description: This dataset is for the publication "Exploring ORCID adoption and metadata presence in Spain's research landscape" and is composed of the following files:



norm_aff.tsv (2795x5) - Curated list of role titles

openalex_all_spanish.csv (811062x4) - List of Spanish authors retrieved from OpenAlex

orcid_affiliation.csv (377377x23) - Activity employment affiliation of Spanish ORCID records

orcid_full_maps.csv (15182292x6)- Topic classification of Spanish ORCID records

orcid_metrics.csv (226512x39) - Metadata availability in Spanish ORCID records
DOI: 10.5281/zenodo.12019458
title: Dataset for publication: "Exploring ORCID adoption and metadata presence in Spain's research landscape"

description: This dataset is for the publication "Exploring ORCID adoption and metadata presence in Spain's research landscape" and is composed of the following files:



norm_aff.tsv (2795x5) - Curated list of role titles

openalex_all_spanish.csv (811062x4) - List of Spanish authors retrieved from OpenAlex

orcid_affiliation.csv (377377x23) - Activity employment affiliation of Spanish ORCID records

orcid_full_maps.csv (15182292x6)- Topic classification of Spanish ORCID records

orcid_metrics.csv (226512x39) - Metadata availability in Spanish ORCID records
DOI: 10.60712/si-id326411.1
title: StrainInfo SI-ID 326411.1

description: StrainInfo dataset 326411 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326484.1
title: StrainInfo SI-ID 326484.1

description: StrainInfo dataset 326484 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326485.1
title: StrainInfo SI-ID 326485.1

description: StrainInfo dataset 326485 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326486.1
title: StrainInfo SI-ID 326486.1

description: StrainInfo dataset 326486 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326336.1
title: StrainInfo SI-ID 326336.1

description: StrainInfo dataset 326336 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326337.1
title: StrainInfo SI-ID 326337.1

description: StrainInfo dataset 326337 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326338.1
title: StrainInfo SI-ID 326338.1

description: StrainInfo dataset 326338 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326412.1
title: StrainInfo SI-ID 326412.1

description: StrainInfo dataset 326412 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326413.1
title: StrainInfo SI-ID 326413.1

description: StrainInfo dataset 326413 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326414.1
title: StrainInfo SI-ID 326414.1

description: StrainInfo dataset 326414 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326415.1
title: StrainInfo SI-ID 326415.1

description: StrainInfo dataset 326415 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326487.1
title: StrainInfo SI-ID 326487.1

description: StrainInfo dataset 326487 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326488.1
title: StrainInfo SI-ID 326488.1

description: StrainInfo dataset 326488 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.34703/gzx1-9v95/xz03r7/eqzpm3
title: LC-TIMS-ToF_Recombinant_rep2

description: :unav
DOI: 10.60712/si-id326489.1
title: StrainInfo SI-ID 326489.1

description: StrainInfo dataset 326489 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.4lvhid
title: Occurrence Download

description: A dataset containing 134075 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megaceryle torquata (Linnaeus, 1766)"
 ]
}

 The dataset includes 134075 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028667-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id326339.1
title: StrainInfo SI-ID 326339.1

description: StrainInfo dataset 326339 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326340.1
title: StrainInfo SI-ID 326340.1

description: StrainInfo dataset 326340 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326341.1
title: StrainInfo SI-ID 326341.1

description: StrainInfo dataset 326341 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326416.1
title: StrainInfo SI-ID 326416.1

description: StrainInfo dataset 326416 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id326417.1
title: StrainInfo SI-ID 326417.1

description: StrainInfo dataset 326417 about a strain of Neurospora crassa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.