cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7379180.v1
title: Code, Data and Reconstructed images from The attenuated spline reconstruction technique for single photon emission computed tomography

description: All code, data and reconstructed images used in all studies involved (simulations, real phantom and clinical), as part of the Electronic Supplementary Material.
DOI: 10.6084/m9.figshare.7379186.v2
title: BreCaHAD: A Dataset for Breast Cancer Histopathological Annotation and Diagnosis

description: This dataset consists of 1 <b>.xlsx</b> file, 2 <b>.png</b> files, 1 <b>.json</b> file and 1 <b>.zip</b> file:<br><b>annotation_details.xlsx: </b>The distribution of annotations in the previously mentioned six classes (mitosis, apoptosis, tumor nuclei, non-tumor nuclei, tubule, and non-tubule) is presented in a Excel spreadsheet.<br><b>original.png: </b>The input image.<br><br><b>annotated.png:</b> An example from the dataset. In the annotated image, blue circles indicate the tumor nuclei, pink circles show non-tumor nuclei such as blood cells, stroma nuclei, and lymphocytes; orange and green circles are mitosis and apoptosis, respectively; light blue circles are true lumen for tubules, and yellow circles represent white regions (non-lumen) such as fat, blood vessel, and broken tissues.<br><br><b>data.json:</b> The annotations for the BreCaHAD dataset are provided in JSON (JavaScript Object Notation) format. In the given example, the JSON file (ground truth) contains two mitosis and only one tumor nuclei annotations. Here, <i>x</i> and <i>y</i> are the coordinates of the centroid of the annotated object, and the values are between [0, 1] (divided by width and height of an image).<br><br><b>BreCaAD.zip: </b>An archive file containing dataset. Three folders are included: images (original images), groundTruth (json files), and groundTruth_display (groundTruth applied on original images)<br><br>
DOI: 10.7284/124332
title: Water Temperature data collected during research cruise OC1610X-2 using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124333
title: Transmissometer data collected during research cruise OC1610X-2 using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124334
title: TSG (Thermosalinograph) data collected during research cruise OC1610X-2 using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379123
title: Additional file 6: of Symbiotic microbes affect the expression of male reproductive genes in Glossina m. morsitans

description: Excel spreadsheet showing the Gene Ontology terms associated to genes down- and up-regulated in GmmApo male reproductive tissues. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.7379123.v1
title: Additional file 6: of Symbiotic microbes affect the expression of male reproductive genes in Glossina m. morsitans

description: Excel spreadsheet showing the Gene Ontology terms associated to genes down- and up-regulated in GmmApo male reproductive tissues. (XLSX 54Â kb)
DOI: 10.7284/124348
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1611A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379114
title: Additional file 7: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: COPASI file (Lipid Metabolism). Should be run with COPASI ( http://copasi.org/ ). (CPS 67 kb)
DOI: 10.7284/124338
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1611A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124340
title: Fluorometer data collected during research cruise OC1611A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124337
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1611A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379090
title: Additional file 5 of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: COPASI file (Rab dynamics). Should be run with COPASI ( http://copasi.org/ ). (CPS 130 kb)
DOI: 10.7284/124341
title: Gyrocompass data collected during research cruise OC1611A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379084
title: Additional file 3: of Symbiotic microbes affect the expression of male reproductive genes in Glossina m. morsitans

description: Excel spreadsheet containing the descriptions of the differentially expressed genes in the reproductive tract tissues between GmmWT and GmmApo males. (XLSX 67Â kb)
DOI: 10.7284/124342
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1611A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379084.v1
title: Additional file 3: of Symbiotic microbes affect the expression of male reproductive genes in Glossina m. morsitans

description: Excel spreadsheet containing the descriptions of the differentially expressed genes in the reproductive tract tissues between GmmWT and GmmApo males. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.7379075
title: Additional file 8: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S8. Ribosome profiling analysis of genes in Eubacterium limosum under heterotrophic and autotrophic growth conditions (XLSX 537 kb)
DOI: 10.7284/124343
title: Radiometer data collected during research cruise OC1611A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379072
title: Additional file 4: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S4. P-values and fold changes of neuropeptide receptor genes. Ovarian and uterine P-values and fold changes of 33 putative neuropeptide receptor genes. (XLSX 1310 kb)
DOI: 10.6084/m9.figshare.7379075.v1
title: Additional file 8: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S8. Ribosome profiling analysis of genes in Eubacterium limosum under heterotrophic and autotrophic growth conditions (XLSX 537 kb)
DOI: 10.6084/m9.figshare.7379072.v1
title: Additional file 4: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S4. P-values and fold changes of neuropeptide receptor genes. Ovarian and uterine P-values and fold changes of 33 putative neuropeptide receptor genes. (XLSX 1310 kb)
DOI: 10.7284/124344
title: Radiometer data collected during research cruise OC1611A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379063
title: Additional file 3: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: Output of the simulation II. Contains a list of all agents in the simulation at a specific time. (XLSX 3343 kb)
DOI: 10.6084/m9.figshare.7379063.v1
title: Additional file 3: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: Output of the simulation II. Contains a list of all agents in the simulation at a specific time. (XLSX 3343 kb)
DOI: 10.6084/m9.figshare.7379090.v1
title: Additional file 5 of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: COPASI file (Rab dynamics). Should be run with COPASI ( http://copasi.org/ ). (CPS 130 kb)
DOI: 10.7284/124349
title: Rain Gauge data collected during research cruise OC1611A using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379054
title: Additional file 3: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S3. Analysis - uteri. Counts of uterine reads uniquely mapped to annotated genes, and calculated P-values and fold changes. Includes lists of fold changes arranged in descending order. (XLSX 1130 kb)
DOI: 10.6084/m9.figshare.7379054.v1
title: Additional file 3: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S3. Analysis - uteri. Counts of uterine reads uniquely mapped to annotated genes, and calculated P-values and fold changes. Includes lists of fold changes arranged in descending order. (XLSX 1130 kb)
DOI: 10.7284/124345
title: Water Temperature data collected during research cruise OC1611A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124346
title: Transmissometer data collected during research cruise OC1611A using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7379042
title: Additional file 2: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: Output of the simulation I. Contains i) the organelle distribution of cargoes along time and ii) the characteristics of the organelles visited by markers along time. (XLSX 478 kb)
DOI: 10.6084/m9.figshare.7379036
title: Additional file 2: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S2. Analysis - ovaries. Counts of ovarian reads uniquely mapped to annotated genes, and calculated P-values and fold changes. Includes lists of fold changes arranged in descending order. (XLSX 1150 kb)
DOI: 10.6084/m9.figshare.7379042.v1
title: Additional file 2: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: Output of the simulation I. Contains i) the organelle distribution of cargoes along time and ii) the characteristics of the organelles visited by markers along time. (XLSX 478 kb)
DOI: 10.6084/m9.figshare.7379027
title: Additional file 1: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: Model parameters and initial organelles. Explanatory comments are included in several cells. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7379036.v1
title: Additional file 2: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S2. Analysis - ovaries. Counts of ovarian reads uniquely mapped to annotated genes, and calculated P-values and fold changes. Includes lists of fold changes arranged in descending order. (XLSX 1150 kb)
DOI: 10.6084/m9.figshare.7379027.v1
title: Additional file 1: of Reconstruction of endosomal organization and function by a combination of ODE and agent-based modeling strategies

description: Model parameters and initial organelles. Explanatory comments are included in several cells. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7379018
title: Additional file 1: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S1. G. m. morsitans genes and homologues. G. m. morsitans gene IDs, gene names, and gene descriptions, and homologues from D. melanogaster. (XLSX 788 kb)
DOI: 10.6084/m9.figshare.7379018.v1
title: Additional file 1: of Gene expression in reproductive organs of tsetse females – initial data in an approach to reduce fecundity

description: Table S1. G. m. morsitans genes and homologues. G. m. morsitans gene IDs, gene names, and gene descriptions, and homologues from D. melanogaster. (XLSX 788 kb)
DOI: 10.6084/m9.figshare.7379006
title: Additional file 4: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S4. KEGG pathways sorted by transcriptionally UP and DOWN regulated genes in Eubacterium limosum under heterotrophic and autotrophic growth conditions (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7379006.v1
title: Additional file 4: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S4. KEGG pathways sorted by transcriptionally UP and DOWN regulated genes in Eubacterium limosum under heterotrophic and autotrophic growth conditions (XLSX 18 kb)
DOI: 10.7284/124360
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1611B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124351
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1611B using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124347
title: TSG (Thermosalinograph) data collected during research cruise OC1611A using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124353
title: Fluorometer data collected during research cruise OC1611B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378979
title: Additional file 2: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S2. Significantly regulated genes of Eubacterium limosum in response to the autotrophic growth condition (XLSX 105 kb)
DOI: 10.6084/m9.figshare.7378979.v1
title: Additional file 2: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S2. Significantly regulated genes of Eubacterium limosum in response to the autotrophic growth condition (XLSX 105 kb)
DOI: 10.7284/124350
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1611B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124354
title: Gyrocompass data collected during research cruise OC1611B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378958
title: Additional file 1: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S1. Transcription expression of genes in Eubacterium limosum under heterotrophic and autotrophic growth conditions (XLSX 552 kb)
DOI: 10.7284/124355
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1611B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378958.v1
title: Additional file 1: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S1. Transcription expression of genes in Eubacterium limosum under heterotrophic and autotrophic growth conditions (XLSX 552 kb)
DOI: 10.7284/124356
title: Radiometer data collected during research cruise OC1611B using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124362
title: Rain Gauge data collected during research cruise OC1611B using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378928
title: Additional file 11: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S10. Protein subunits of known protein complexes used in stoichiometry analysis (XLSX 14 kb)
DOI: 10.7284/124357
title: Water Temperature data collected during research cruise OC1611B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378928.v1
title: Additional file 11: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S10. Protein subunits of known protein complexes used in stoichiometry analysis (XLSX 14 kb)
DOI: 10.7284/124361
title: Timeserver data collected during research cruise OC1611B using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378916
title: Additional file 10: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S9. KEGG pathways sorted by translation efficiency UP and DOWN regulated genes in Eubacterium limosum (XLSX 18 kb)
DOI: 10.7284/124358
title: Transmissometer data collected during research cruise OC1611B using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378916.v1
title: Additional file 10: of Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth

description: Table S9. KEGG pathways sorted by translation efficiency UP and DOWN regulated genes in Eubacterium limosum (XLSX 18 kb)
DOI: 10.7284/124359
title: TSG (Thermosalinograph) data collected during research cruise OC1611B using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129343
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1701A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378895
title: Additional file 3: of Drought stress has transgenerational effects on seeds and seedlings in winter oilseed rape (Brassica napus L.)

description: Seedling metabolome: Concentrations of different nitrogen compounds, amino acids, sugars and organic acids in seedlings derived from 8 diverse winter oilseed rape genotypes cultivated under control and drought stress conditions. Values are means of three replicates + standard errors. Significant differences at p
DOI: 10.6084/m9.figshare.7378895.v1
title: Additional file 3: of Drought stress has transgenerational effects on seeds and seedlings in winter oilseed rape (Brassica napus L.)

description: Seedling metabolome: Concentrations of different nitrogen compounds, amino acids, sugars and organic acids in seedlings derived from 8 diverse winter oilseed rape genotypes cultivated under control and drought stress conditions. Values are means of three replicates + standard errors. Significant differences at p
DOI: 10.7284/129344
title: Anemometer data collected during research cruise OC1701A using a Gill WindObserver II instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378877
title: Additional file 1: of Decisional conflict of physicians during the decision-making process for a simulated advanced-stage cancer patient: an international longitudinal study with German and Belgian physicians

description: Data Repository for study data. In this file all relevant data to be analysed are included. (CSV 5 kb)
DOI: 10.6084/m9.figshare.7378877.v1
title: Additional file 1: of Decisional conflict of physicians during the decision-making process for a simulated advanced-stage cancer patient: an international longitudinal study with German and Belgian physicians

description: Data Repository for study data. In this file all relevant data to be analysed are included. (CSV 5 kb)
DOI: 10.7284/129338
title: Fluorometer data collected during research cruise OC1701A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378862
title: Additional file 1: of Drought stress has transgenerational effects on seeds and seedlings in winter oilseed rape (Brassica napus L.)

description: Seed fatty acid composition: Relative amounts of fatty acids in the seeds of 8 diverse winter oilseed rape genotypes cultivated under control and drought stress conditions. Values are means of three replicates + standard errors. Significant differences at p
DOI: 10.7284/129426
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1701A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7378862.v1
title: Additional file 1: of Drought stress has transgenerational effects on seeds and seedlings in winter oilseed rape (Brassica napus L.)

description: Seed fatty acid composition: Relative amounts of fatty acids in the seeds of 8 diverse winter oilseed rape genotypes cultivated under control and drought stress conditions. Values are means of three replicates + standard errors. Significant differences at p
DOI: 10.7284/129428
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1701A using a Furuno GP-90 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129346
title: Gyrocompass data collected during research cruise OC1701A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129348
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1701A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129350
title: Water Temperature data collected during research cruise OC1701A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition