cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7504213
title: Dataset related to the article "A token-mixer architecture for CAD-RADS classification of coronary stenosis on multiplanar reconstruction CT images"

description: This record contains raw data related to the article "A token-mixer architecture for CAD-RADS classification of coronary stenosis on multiplanar reconstruction CT images" A B S T R A C T<br> Background and objective: In patients with suspected Coronary Artery Disease (CAD), the severity of stenosis needs<br> to be assessed for precise clinical management. An automatic deep learning-based algorithm to classify coronary<br> stenosis lesions according to the Coronary Artery Disease Reporting and Data System (CAD-RADS) in multiplanar<br> reconstruction images acquired with Coronary Computed Tomography Angiography (CCTA) is proposed.<br> Methods: In this retrospective study, 288 patients with suspected CAD who underwent CCTA scans were included.<br> To model long-range semantic information, which is needed to identify and classify stenosis with challenging<br> appearance, we adopted a token-mixer architecture (ConvMixer), which can learn structural relationship over<br> the whole coronary artery. ConvMixer consists of a patch embedding layer followed by repeated convolutional<br> blocks to enable the algorithm to learn long-range dependences between pixels. To visually assess ConvMixer<br> performance, Gradient-Weighted Class Activation Mapping (Grad-CAM) analysis was used.<br> Results: Experimental results using 5-fold cross-validation showed that our ConvMixer can classify significant<br> coronary artery stenosis (i.e., stenosis with luminal narrowing ≥50%) with accuracy and sensitivity of 87% and<br> 90%, respectively. For CAD-RADS 0 vs. 1–2 vs. 3–4 vs. 5 classification, ConvMixer achieved accuracy and<br> sensitivity of 72% and 75%, respectively. Additional experiments showed that ConvMixer achieved a better<br> trade-off between performance and complexity compared to pyramid-shaped convolutional neural networks.<br> Conclusions: Our algorithm might provide clinicians
DOI: 10.6084/m9.figshare.21816834
title: Data for Li-2023-GJI: The influence of uncertain mantle density and viscosity structures on the calculations of deep mantle flow and lateral motion of plumes

description: This file contain data for Figures 1-19. After unzip the file, you will see 19 folders and 19 Figures in pdf format. Wihtin each folder, there is a Figure*.sh file, which is a bash script that uses GMT version 6.1.0 to make plots for each figure. The GMT software is publically available at https://www.generic-mapping-tools.org.
DOI: 10.6084/m9.figshare.21816834.v1
title: Data for Li-2023-GJI: The influence of uncertain mantle density and viscosity structures on the calculations of deep mantle flow and lateral motion of plumes

description: This file contain data for Figures 1-19. After unzip the file, you will see 19 folders and 19 Figures in pdf format. Wihtin each folder, there is a Figure*.sh file, which is a bash script that uses GMT version 6.1.0 to make plots for each figure. The GMT software is publically available at https://www.generic-mapping-tools.org.
DOI: 10.6084/m9.figshare.21841686
title: Supplementary file 2 - Exercise immunology applied to pediatric sport: A review with approach on the importance of monitoring the stages of puberty & biological maturation

description: Supplementary material 2 - Automated spreadsheets to calculate the different events of biological maturation in children and adolescents.
DOI: 10.6084/m9.figshare.21841686.v1
title: Supplementary file 2 - Exercise immunology applied to pediatric sport: A review with approach on the importance of monitoring the stages of puberty & biological maturation

description: Supplementary material 2 - Automated spreadsheets to calculate the different events of biological maturation in children and adolescents.
DOI: 10.5281/zenodo.7064718
title: TotalSegmentator weights - Task 258 - lung vessels

description: nnU-Net weights for TotalSegmentator lung vessels model (Task 258). See https://github.com/wasserth/TotalSegmentator for more details.
DOI: 10.5281/zenodo.7064717
title: TotalSegmentator weights - Task 258 - lung vessels

description: nnU-Net weights for TotalSegmentator lung vessels model (Task 258). See https://github.com/wasserth/TotalSegmentator for more details.
DOI: 10.5281/zenodo.7079161
title: TotalSegmentator weights - Task 150 - ICB

description: nnU-Net weights for TotalSegmentator intracerebral hemorrhage model (Task 150). See https://github.com/wasserth/TotalSegmentator for more details.
DOI: 10.5281/zenodo.7079160
title: TotalSegmentator weights - Task 150 - ICB

description: nnU-Net weights for TotalSegmentator intracerebral hemorrhage model (Task 150). See https://github.com/wasserth/TotalSegmentator for more details.
DOI: 10.6084/m9.figshare.21841761
title: memory_clinic_database.xlsx

description: Database containing records of patients assessed at the University of Cape Town / Groote Schuur Hospital Memory Clinic between January 2014 and January 2020.
DOI: 10.6084/m9.figshare.21841761.v1
title: memory_clinic_database.xlsx

description: Database containing records of patients assessed at the University of Cape Town / Groote Schuur Hospital Memory Clinic between January 2014 and January 2020.
DOI: 10.5281/zenodo.6802197
title: Artifacts for the 2022 ATVA Paper: SISL: Concolic Testing of Structured Binary Input Formats via Partial Specification

description: Artifacts for the evaluation of the publication <em>SISL: Concolic Testing of Structured Binary Input Formats via Partial Specification,</em> which will be published as part of the 2022 <em>International Symposium on Automated Technology for Verification and Analysis </em>(ATVA). Usage of the provided artifacts requires installing the SISL tooling first. In this regard, please refer to either the SISL user manual or the documentation in the <em>sisl </em>and <em>sisl-vp</em> GitHub repositories. Both <em>sisl</em> and <em>sisl-vp</em> need to be installed to system-wide locations in order to be able to use the scripts provided as part of these artifacts. More information on using the artifacts is available in the README.md file.
DOI: 10.5281/zenodo.7515747
title: Artifacts for the IEEE Internet of Things Journal Publication: Specification-based Symbolic Execution for Stateful Network Protocol Implementations in the IoT

description: Artifacts for the evaluation of the publication <em>Specification-based Symbolic Execution for Stateful Network Protocol Implementations in the IoT </em>which will be published in the IEEE Internet of Things journal. More information is available in the provided README.md file.
DOI: 10.6084/m9.figshare.21841521
title: CKDu-Proteomics_Supplementary_AJP_F-00285-2022.docx

description: Supplementary file with figures S1 - S10 and table S4 - S5. Supplementary tables S1 - S3, S6 -S8.
DOI: 10.6084/m9.figshare.21841521.v1
title: CKDu-Proteomics_Supplementary_AJP_F-00285-2022.docx

description: Supplementary file with figures S1 - S10 and table S4 - S5. Supplementary tables S1 - S3, S6 -S8.
DOI: 10.34740/kaggle/dsv/4824213
title: WiDSTrainTestFeather
DOI: 10.5281/zenodo.7505420
title: The ER folding sensor UGGT1 acts on TAPBPR-chaperoned peptide-free MHC I

description: Adaptive immune responses are triggered by antigenic peptides presented on major histocompatibility complex class I (MHC I) at the surface of pathogen-infected or cancerous cells. Formation of stable peptide-MHC I complexes is facilitated by tapasin and TAPBPR, two related MHC I-specific chaperones that catalyze selective loading of suitable peptides onto MHC I in a process called peptide editing or proofreading. On their journey to the cell surface, MHC I complexes must pass a quality control step performed by UGGT1, which senses the folding status of the transiting N-linked glycoproteins in the endoplasmic reticulum (ER). UGGT1 reglucosylates non-native glycoproteins and thereby allows them to revisit the ER folding machinery. Here, we describe a reconstituted <em>in-vitro</em> system of purified human proteins that enabled us to delineate the function of TAPBPR during the UGGT1-catalyzed quality control and reglucosylation of MHC I. By combining glycoengineering with liquid chromatography-mass spectrometry, we show that TAPBPR promotes reglucosylation of peptide-free MHC I by UGGT1. Thus, UGGT1 cooperates with TAPBPR in fulfilling a crucial function in the quality control mechanisms of antigen processing and presentation.
DOI: 10.6084/m9.figshare.21841635.v1
title: SPSS Raw Data.zip

description: This study aims to find out students’ reading comprehension levels based on the Common European Framework Reference (CEFR), and to establish whether students who received elaborative feedback on an online reading comprehension test would be more effective than students who did not get elaborative feedback to enhance their English Language reading comprehension. Data were analyzed using mean, independent samples t test, and paired sample t test. Thus, the data in this repository contain the raw score of the pretest and post test of both the comparison and the experimental groups as well as the comparison of the mean scores of the experimental and the comparison groups to see the students' level of reading comprehension before the intervention. Moreover, data for the comparison of the mean of the pretest and post-test for the experimental group has been included in the data set and this can be used for the paired samples t-test analysis.
DOI: 10.57771/6hxq-2b62
title: Biodiversity Thesaurus
title: Thésaurus Biodiversité
title: BIODIVTHES

description: <p>This bilingual thesaurus organizes the key concepts of biodiversity sciences, in their basic and applied ecological components. It uses polyhierarchy and includes 818 reciprocal associative relationships. The 1654 French and English descriptors (designating 827 concepts) are enriched with a large number of synonyms (1860) and hidden variants (7020) in both languages. Concepts are grouped into 82 collections, by semantic categories, thematic fields and EBV classes (Essential Biodiversity Variables). Definitions are given with their sources. This resource is aligned with the international thesauri AGROVOC, GEMET (GEneral Multilingual Environmental Thesaurus) and EnvThes (Environmental Thesaurus), as well as with the ontology ENVO (Environment Ontology).</p>
description: <p>Ce thésaurus entièrement bilingue organise les concepts clés des sciences de la biodiversité, dans leurs composantes écologiques fondamentales et appliquées. Il utilise la polyhiérarchie et comprend 818 relations associatives réciproques. Les 1654 descripteurs français et anglais (désignant 827 concepts) sont accompagnés d'un grand nombre de synonymes (1860) et de variantes cachées (7020) dans les 2 langues. Les concepts sont regroupés en 82 collections, par catégories sémantiques, domaines thématiques et classes de VEB (variables essentielles de biodiversité). Les définitions sont données avec leurs sources. Cette ressource est alignée sur les thésaurus internationaux AGROVOC, GEMET (GEneral Multilingual Environmental Thesaurus) et EnvThes (Environmental Thesaurus), ainsi que sur l'ontologie ENVO (Environment Ontology).</p>
DOI: 10.5281/zenodo.5788537
title: Onset of criticality in hyper-auxetic polymer networks

description: Data from the figures presented in the article entitled <strong>Onset of criticality in hyper-auxetic polymer networks</strong>.
DOI: 10.5281/zenodo.5788536
title: Onset of criticality in hyper-auxetic polymer networks

description: Data from the figures presented in the article entitled <strong>Onset of criticality in hyper-auxetic polymer networks</strong>.
DOI: 10.6084/m9.figshare.21841976
title: Geoheritage of Cajón del Maipo aspiring Geopark: inventory, assessment and opportunities for local development in the Andes of Central Chile

description: Supplementary material 2: Results obtained by applying the quantitative geosites assessment methodology, as indicated in Supplementary material 1. These data were used to elaborate Table 4 and Figures 6 and 7.
DOI: 10.6084/m9.figshare.21841976.v1
title: Geoheritage of Cajón del Maipo aspiring Geopark: inventory, assessment and opportunities for local development in the Andes of Central Chile

description: Supplementary material 2: Results obtained by applying the quantitative geosites assessment methodology, as indicated in Supplementary material 1. These data were used to elaborate Table 4 and Figures 6 and 7.
DOI: 10.5281/zenodo.7383044
title: Data from: Capacity and selection in immersive visual working memory following naturalistic object disappearance

description: Trial datasets and timeseries datasets associated with the experiment reported in the manuscript "Capacity and selection in immersive visual working memory following naturalistic object disappearance", by Babak Chawoush, Dejan Draschkow & Freek van Ede
DOI: 10.5281/zenodo.7383045
title: Data from: Capacity and selection in immersive visual working memory following naturalistic object disappearance

description: Trial datasets and timeseries datasets associated with the experiment reported in the manuscript "Capacity and selection in immersive visual working memory following naturalistic object disappearance", by Babak Chawoush, Dejan Draschkow & Freek van Ede
DOI: 10.5281/zenodo.7516168
title: Data from: Capacity and selection in immersive visual working memory following naturalistic object disappearance

description: Trial datasets and timeseries datasets associated with the experiment reported in the manuscript "Capacity and selection in immersive visual working memory following naturalistic object disappearance", by Babak Chawoush, Dejan Draschkow & Freek van Ede
DOI: 10.5281/zenodo.7281214
title: Data for the article "Management of social behaviour of domestic yaks in Manang, Nepal: an etho-ethnographic study"

description: Data for the paper "Social behaviour of domestic yaks in Manang, Nepal: an etho-ethnographic study". ANimated GIFs, GPS data, activity data and proximity data. Herdsmen use different techniques, as per varying geographies and cultures, to keep the cohesion within herds and avoid animals getting lost or predated. However, there is no study on the social behaviour of yaks and on herdsmen management practices. Therefore, this ethology study was initiated by ethnographic inquiries. We collected data from two herds living at the same settlement (Yak kharka, 4,100 m altitude, Nepal) by equipping them with loggers. One of the herdsman used the tether rope while other did not. Moreover, the Thaku herd had a more proactive shepherd than the Phurba one. In each herd, 17 animals were equipped with one actigraph wgt3x-BT to measure activity using accelerometer and spatial associations using proximity recorder. One of the herds was equipped with GPS (N=11) as well. Using GPS locations and activity, we showed that the two herds were cohesive and synchronised their activities but the herd with the tether rope was more cohesive.
DOI: 10.5281/zenodo.7281213
title: Data for the article "Management of social behaviour of domestic yaks in Manang, Nepal: an etho-ethnographic study"

description: Data for the paper "Social behaviour of domestic yaks in Manang, Nepal: an etho-ethnographic study". ANimated GIFs, GPS data, activity data and proximity data. Herdsmen use different techniques, as per varying geographies and cultures, to keep the cohesion within herds and avoid animals getting lost or predated. However, there is no study on the social behaviour of yaks and on herdsmen management practices. Therefore, this ethology study was initiated by ethnographic inquiries. We collected data from two herds living at the same settlement (Yak kharka, 4,100 m altitude, Nepal) by equipping them with loggers. One of the herdsman used the tether rope while other did not. Moreover, the Thaku herd had a more proactive shepherd than the Phurba one. In each herd, 17 animals were equipped with one actigraph wgt3x-BT to measure activity using accelerometer and spatial associations using proximity recorder. One of the herds was equipped with GPS (N=11) as well. Using GPS locations and activity, we showed that the two herds were cohesive and synchronised their activities but the herd with the tether rope was more cohesive.
DOI: 10.6084/m9.figshare.21841635.v2
title: Effects of Web-based Feedback on Students' Reading Comprehension

description: This study aims to find out students’ reading comprehension levels based on the Common European Framework Reference (CEFR), and to establish whether students who received elaborative feedback on an online reading comprehension test would be more effective than students who did not get elaborative feedback to enhance their English Language reading comprehension. Data were analyzed using mean, independent samples t test, and paired sample t test. Thus, the data in this repository contain the raw score of the pretest and post test of both the comparison and the experimental groups as well as the comparison of the mean scores of the experimental and the comparison groups to see the students' level of reading comprehension before the intervention. Moreover, data for the comparison of the mean of the pretest and post-test for the experimental group has been included in the data set and this can be used for the paired samples t-test analysis.
DOI: 10.5281/zenodo.7505870
title: Data set. Optical properties. J-aggregate:PVA polaritonic films.

description: Optical properties (real and imaginary part of permittivity) of J-aggregate:PVA materials analysed in manuscript entitled "Bio-inspired building blocks for all-organic metamaterials from visible to near-infrared". arXiv preprint arXiv:2210.02315
DOI: 10.5281/zenodo.7505869
title: Data set. Optical properties. J-aggregate:PVA polaritonic films.

description: Optical properties (real and imaginary part of permittivity) of J-aggregate:PVA materials analysed in manuscript entitled "Bio-inspired building blocks for all-organic metamaterials from visible to near-infrared". arXiv preprint arXiv:2210.02315
DOI: 10.25573/serc.21782198.v1
title: 2019 Weekly Water Quality Campaign Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute

description: 2019 water quality data collected on a weekly basis using a YSI EXO2 multiparameter sonde and Secchi disk at 8 sites surrounding the MarineGEO Bocas del Toro observatory (Bocas del Toro Research Station, Smithsonian Tropical Research Institute [STRI], Panama). The figshare resource also contains information about the quality control process to assist interpretation and analysis. Review the "2019_readme.txt" file for more information. Site locations: Colon: 9.386916, -82.211083 Hospital Point: 9.333416, -82.227166 Cristobal: 9.304166, -82.298611 Pastores: 9.210000, -82.326944 Almirante: 9.261694, -82.361833 Punta Caracol: 9.348388, -82.324888 Boca del Drago: 9.422900, -82.339400 STRI: 9.348611, -82.266111
DOI: 10.25573/serc.21788270.v1
title: 2020 Weekly Water Quality Campaign Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute

description: 2020 water quality data collected on a weekly basis using a YSI EXO2 multiparameter sonde and Secchi disk at 8 sites surrounding the MarineGEO Bocas del Toro observatory (Bocas del Toro Research Station, Smithsonian Tropical Research Institute [STRI], Panama). The figshare resource also contains information about the quality control process to assist interpretation and analysis. Review the "2020_readme.txt" file for more information. Site locations: Colon: 9.386916, -82.211083 Hospital Point: 9.333416, -82.227166 Cristobal: 9.304166, -82.298611 Pastores: 9.210000, -82.326944 Almirante: 9.261694, -82.361833 Punta Caracol: 9.348388, -82.324888 Boca del Drago: 9.422900, -82.339400 STRI: 9.348611, -82.266111
DOI: 10.25573/serc.21788321.v1
title: 2021 Weekly Water Quality Campaign Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute

description: 2021 water quality data collected on a weekly basis using a YSI EXO2 multiparameter sonde and Secchi disk at 8 sites surrounding the MarineGEO Bocas del Toro observatory (Bocas del Toro Research Station, Smithsonian Tropical Research Institute [STRI], Panama). The figshare resource also contains information about the quality control process to assist interpretation and analysis. Review the "2021_readme.txt" file for more information. Site locations: Colon: 9.386916, -82.211083 Hospital Point: 9.333416, -82.227166 Cristobal: 9.304166, -82.298611 Pastores: 9.210000, -82.326944 Almirante: 9.261694, -82.361833 Punta Caracol: 9.348388, -82.324888 Boca del Drago: 9.422900, -82.339400 STRI: 9.348611, -82.266111
DOI: 10.25573/serc.21788324.v1
title: 2022 Weekly Water Quality Campaign Data, Bocas del Toro, MarineGEO, Smithsonian Tropical Research Institute

description: 2022 water quality data collected on a weekly basis using a YSI EXO2 multiparameter sonde and Secchi disk at 8 sites surrounding the MarineGEO Bocas del Toro observatory (Bocas del Toro Research Station, Smithsonian Tropical Research Institute [STRI], Panama). The figshare resource also contains information about the quality control process to assist interpretation and analysis. Review the "2022_readme.txt" file for more information. Site locations: Colon: 9.386916, -82.211083 Hospital Point: 9.333416, -82.227166 Cristobal: 9.304166, -82.298611 Pastores: 9.210000, -82.326944 Almirante: 9.261694, -82.361833 Punta Caracol: 9.348388, -82.324888 Boca del Drago: 9.422900, -82.339400 STRI: 9.348611, -82.266111
DOI: 10.15129/4efcf3ae-4e00-4b66-b27c-407668d8fd01
title: Data for: "Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study"

description: This dataset was obtained for the paper: "Chitin and Chitosan Binding to the α-Chitin Crystal: A Molecular Dynamics Study" The dataset includes data obtained from molecular dynamics simulations and contains the input files required for the recreation of the simulations, alongside the energy, velocity, coordinates and collective variable outputs. The data is in the NAMD (open-source software) standard formats. Further description of the data is available in the readme files which accompany the dataset.
DOI: 10.5281/zenodo.7415456
title: Data for the paper "Direct Microstability Optimization of Stellarator Devices"

description: This archive contains data and source code used for the paper "Direct Microstability Optimization of Stellarator Devices".
DOI: 10.5281/zenodo.7516269
title: Data for the paper "Direct Microstability Optimization of Stellarator Devices"

description: This archive contains data and source code used for the paper "Direct Microstability Optimization of Stellarator Devices".
DOI: 10.5281/zenodo.7516286
title: CKDu-Proteomics-Supplementary

description: Supplementary file with figures S1 - S10 and table S4 - S5. Supplementary tables S1 - S3, S6 -S8.
DOI: 10.5281/zenodo.7516285
title: CKDu-Proteomics-Supplementary

description: Supplementary file with figures S1 - S10 and table S4 - S5. Supplementary tables S1 - S3, S6 -S8.