cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6159896
title: Datasets Wolsink et al. (2019) PlosOne

description: Data contains main variables voice (quantity), voice quality, and WMC.<br>This depository contains the datasets of alle studies (1,2, and 3).
DOI: 10.6084/m9.figshare.6159896.v1
title: Datasets Wolsink et al. (2019) PlosOne

description: Data contains main variables voice (quantity), voice quality, and WMC.<br>This depository contains the datasets of alle studies (1,2, and 3).
DOI: 10.6084/m9.figshare.6159878
title: Behavioural Clips for mating pairs with predators

description: Clips from full videos used to score a mating pairs courtship and copulation behaviours. These clips highlight both mating behaviours and antipredatory behaviours displayed by the mating pairs.<br>Each clip has 4 containers with a mating pair of <i>Drosophila melanogaster </i>that are separated from a spider beneath by a layer of mesh. Additional details can be seen in BoxA. Courtship Predator where clips was trimmed from full video files.<br>"Courting" videos show the courtship initiations, durations and different behavioural displays that were used to score the number of courtship displays and the amount of time courting through 15 minutes. Note: other videos have courtship occurring as well for more examples.<br>"Copulation" video shows a male initiating copulation with a female (used as copulation initiation measure). Copulation duration was measured from this start time to the moment the male and female separated. Note: this video is the only one taken from BoxC - Copulation Predator.<br>All other videos are present as examples of flies reacting to the predation threat beneath them. Behaviours highlighted include "Jumping" away from a perceived threat, "Turning" and "Avoidance" to avoid a predator, "AbdominalLift", a behaviour previously observed in the lab believed to be an antipredatory trait, "Freeze" where a fly stops moving when close to a predator, and "FlipOut" where a fly jumps, flies and moves rapidly when encountering a predator.<br><br>Videos ending correspond to container showing behaviour of interest (BL = Bottom Left, TR = Top Right etc.).
DOI: 10.6084/m9.figshare.6159878.v1
title: Behavioural Clips for mating pairs with predators

description: Clips from full videos used to score a mating pairs courtship and copulation behaviours. These clips highlight both mating behaviours and antipredatory behaviours displayed by the mating pairs.<br>Each clip has 4 containers with a mating pair of <i>Drosophila melanogaster </i>that are separated from a spider beneath by a layer of mesh. Additional details can be seen in BoxA. Courtship Predator where clips was trimmed from full video files.<br>"Courting" videos show the courtship initiations, durations and different behavioural displays that were used to score the number of courtship displays and the amount of time courting through 15 minutes. Note: other videos have courtship occurring as well for more examples.<br>"Copulation" video shows a male initiating copulation with a female (used as copulation initiation measure). Copulation duration was measured from this start time to the moment the male and female separated. Note: this video is the only one taken from BoxC - Copulation Predator.<br>All other videos are present as examples of flies reacting to the predation threat beneath them. Behaviours highlighted include "Jumping" away from a perceived threat, "Turning" and "Avoidance" to avoid a predator, "AbdominalLift", a behaviour previously observed in the lab believed to be an antipredatory trait, "Freeze" where a fly stops moving when close to a predator, and "FlipOut" where a fly jumps, flies and moves rapidly when encountering a predator.<br><br>Videos ending correspond to container showing behaviour of interest (BL = Bottom Left, TR = Top Right etc.).
DOI: 10.6084/m9.figshare.6159824
title: Supplementary Material for: MicroRNA-10b Promotes Apoptosis via JNK Pathway in Clear Cell Renal Cell Carcinoma

description: <b><i>Background/Aims:</i></b> To investigate the downregulation of microRNA (miR)-10b in clear cell renal cell carcinoma (ccRCC) and its mechanistic involvement in tumourigenesis. <b><i>Methods:</i></b> The relative expression of miR-10b in ccRCC samples were determined by real-time PCR. Exogenous expression and knockdown of endogenous miR-10b were performed by transfection with indicated plasmids into 786-0 cells. Cell proliferation was evaluated using Cell Counting Kit-8 assay. Cell apoptosis was analyzed by Annexin V/propidium iodide staining. MAPK pathway activation was detected by western blotting with indicated antibodies. <b><i>Results:</i></b> We confirmed the downregulation of miR-10b in ccRCC tumour. The forced expression of miR-10b inhibited cell proliferation in 786-0 cells. Moreover, miR-10b stimulated apoptosis in 786-0 cells, which was abrogated by specific miR-10b inhibitor. We further elucidated that the apoptosis induction was mediated by the JNK pathway activation. We consolidated this observation by combinational treatment with JNK specific inhibitor, which was shown to completely impede miR-10b elicited apoptosis. <b><i>Conclusion:</i></b> We suggested a tumour suppressor function of miR-10b in tumourigenesis of ccRCC via proliferation suppression and apoptosis induction, and the latter was mediated by the JNK pathway activation.
DOI: 10.6084/m9.figshare.6159824.v1
title: Supplementary Material for: MicroRNA-10b Promotes Apoptosis via JNK Pathway in Clear Cell Renal Cell Carcinoma

description: <b><i>Background/Aims:</i></b> To investigate the downregulation of microRNA (miR)-10b in clear cell renal cell carcinoma (ccRCC) and its mechanistic involvement in tumourigenesis. <b><i>Methods:</i></b> The relative expression of miR-10b in ccRCC samples were determined by real-time PCR. Exogenous expression and knockdown of endogenous miR-10b were performed by transfection with indicated plasmids into 786-0 cells. Cell proliferation was evaluated using Cell Counting Kit-8 assay. Cell apoptosis was analyzed by Annexin V/propidium iodide staining. MAPK pathway activation was detected by western blotting with indicated antibodies. <b><i>Results:</i></b> We confirmed the downregulation of miR-10b in ccRCC tumour. The forced expression of miR-10b inhibited cell proliferation in 786-0 cells. Moreover, miR-10b stimulated apoptosis in 786-0 cells, which was abrogated by specific miR-10b inhibitor. We further elucidated that the apoptosis induction was mediated by the JNK pathway activation. We consolidated this observation by combinational treatment with JNK specific inhibitor, which was shown to completely impede miR-10b elicited apoptosis. <b><i>Conclusion:</i></b> We suggested a tumour suppressor function of miR-10b in tumourigenesis of ccRCC via proliferation suppression and apoptosis induction, and the latter was mediated by the JNK pathway activation.
DOI: 10.6084/m9.figshare.6159725
title: AURITA: an affordable, autonomous recording device for acoustic monitoring of audible and ultrasonic frequencies

description: Passive acoustic monitoring can be used for many purposes including biodiversity and habitat assessments and studying the ecology of populations, communities and soundscapes. As such, acoustic recording devices are essential data collection tools for bioacousticians and soundscape ecologists. Currently available commercial options are typically expensive and limited to recording either ultrasonic or audible frequencies. Here, we present the AURITA (Audible and Ultrasonic Recording In TAndem) for the autonomous collection of both audible and ultrasonic acoustic data. This self-contained, modular unit combines the Solo, an open-source, Raspberry-Pi-based recorder and a commercially available bat recorder, the Peersonic RPA2, enabling it to capture sounds from 60 Hz to 192 kHz in WAV format. The configuration presented costs ~£350 (excluding memory cards and batteries) to produce and can be maintained and repaired in the field. Two nine-week field tests involving 12 AURITA units were conducted in 2016 and 2017 and confirmed their reliability, resulting in 34,093 h of audible data and 551 h of ultrasonic data; all units were retrieved successfully and intact. The AURITA proved to be reliable in the field and produced high-quality acoustic data, making it ideal for simultaneous monitoring in both audible and ultrasonic frequencies over continuous periods of time.
DOI: 10.6084/m9.figshare.6159725.v1
title: AURITA: an affordable, autonomous recording device for acoustic monitoring of audible and ultrasonic frequencies

description: Passive acoustic monitoring can be used for many purposes including biodiversity and habitat assessments and studying the ecology of populations, communities and soundscapes. As such, acoustic recording devices are essential data collection tools for bioacousticians and soundscape ecologists. Currently available commercial options are typically expensive and limited to recording either ultrasonic or audible frequencies. Here, we present the AURITA (Audible and Ultrasonic Recording In TAndem) for the autonomous collection of both audible and ultrasonic acoustic data. This self-contained, modular unit combines the Solo, an open-source, Raspberry-Pi-based recorder and a commercially available bat recorder, the Peersonic RPA2, enabling it to capture sounds from 60 Hz to 192 kHz in WAV format. The configuration presented costs ~£350 (excluding memory cards and batteries) to produce and can be maintained and repaired in the field. Two nine-week field tests involving 12 AURITA units were conducted in 2016 and 2017 and confirmed their reliability, resulting in 34,093 h of audible data and 551 h of ultrasonic data; all units were retrieved successfully and intact. The AURITA proved to be reliable in the field and produced high-quality acoustic data, making it ideal for simultaneous monitoring in both audible and ultrasonic frequencies over continuous periods of time.
DOI: 10.5281/zenodo.4008146
title: Dataset for Physician Preparedness for Resource Allocation Decisions Under Pandemic Conditions: A Cross-Sectional Survey of Canadian Physicians, April 2020

description: Survey responses.
DOI: 10.5281/zenodo.4008145
title: Dataset for Physician Preparedness for Resource Allocation Decisions Under Pandemic Conditions: A Cross-Sectional Survey of Canadian Physicians, April 2020

description: Survey responses.
DOI: 10.6084/m9.figshare.6159413
title: Talk at EGU 2018: Forward modeling of coronal mass ejection flux ropes in the inner heliosphere with 3DCORE

description: This is my talk on the semi-empirical modeling of magnetic flux ropes in solar storms (also known as coronal mass ejections), which may form an interesting tool in space weather research for forecasting magnetic field profiles and interpretation of future mission data from Parker Solar Probe, Bepi Colombo and Solar Orbiter.<br>Möstl et al. (2018) https://arxiv.org/abs/1710.00587https://github.com/cmoestl/3DCORE<br>
DOI: 10.6084/m9.figshare.6159413.v1
title: Talk at EGU 2018: Forward modeling of coronal mass ejection flux ropes in the inner heliosphere with 3DCORE

description: This is my talk on the semi-empirical modeling of magnetic flux ropes in solar storms (also known as coronal mass ejections), which may form an interesting tool in space weather research for forecasting magnetic field profiles and interpretation of future mission data from Parker Solar Probe, Bepi Colombo and Solar Orbiter.<br>Möstl et al. (2018) https://arxiv.org/abs/1710.00587https://github.com/cmoestl/3DCORE<br>
DOI: 10.6084/m9.figshare.6159407
title: Fermats great theorem in the light of analytic geometryan (translation into English)

description: The spaces with dimension greater than 3 do not exist in real space. Based on a multi-dimensional space mathematical and physical hypotheses is incorrect. Einstein's four-dimensional space is specific, where time is not a spatial category, and does not contradict this conclusion.
DOI: 10.6084/m9.figshare.6159407.v1
title: Fermats great theorem in the light of analytic geometryan (translation into English)

description: The spaces with dimension greater than 3 do not exist in real space. Based on a multi-dimensional space mathematical and physical hypotheses is incorrect. Einstein's four-dimensional space is specific, where time is not a spatial category, and does not contradict this conclusion.
DOI: 10.17608/k6.auckland.6159395
title: IGV_views.tar.zip

description: IGV viewing files to view genomic features of the human ribosomal DNA (rDNA) such as conservation with primates, transcripts, chromatin features, and repeats. As part of a comparative genomics study to identify potential functional elements in the human rDNA IGS by phylogenetic footprinting.
DOI: 10.17608/k6.auckland.6159395.v1
title: IGV_views.tar.zip

description: IGV viewing files to view genomic features of the human ribosomal DNA (rDNA) such as conservation with primates, transcripts, chromatin features, and repeats. As part of a comparative genomics study to identify potential functional elements in the human rDNA IGS by phylogenetic footprinting.
DOI: 10.6084/m9.figshare.6159356
title: Carpark Dataset

description: This dataset contains images which have been rendered from the Blender Carpark model. Frames include a mixture of lighting scenes from bright to dark as well as three different weather conditions: sunny, wet and foggy. For each rendered frame a corresponding ground truth depth and semantic annotation was generated and added to the dataset.
DOI: 10.6084/m9.figshare.6159329
title: Combining geochemistry and geochronology of transported regolith to reveal bedrock-hosted mineralization in the arid east Wongatha area of south central Western Australia

description: Screening and analytical data for the &lt;50-µm fraction of regolith from three profile sites in the east Wongatha area
DOI: 10.6084/m9.figshare.6159329.v1
title: Combining geochemistry and geochronology of transported regolith to reveal bedrock-hosted mineralization in the arid east Wongatha area of south central Western Australia

description: Screening and analytical data for the &lt;50-µm fraction of regolith from three profile sites in the east Wongatha area
DOI: 10.6084/m9.figshare.6159281
title: The negative feedback dysregulation effect: losses of motor control in response to negative feedback

description: Negative feedback has paradoxical features to it. This form of feedback can have informational value under some circumstances, but it can also threaten the ego, potentially upsetting behaviour as a result. To investigate possible consequences of the latter type, two experiments (total <i>N</i> = 159) presented positive or negative feedback within a sequence-prediction task that could not be solved. Following feedback, participants had to control their behaviours as effectively as possible in a motor control task. Relative to positive feedback, negative feedback undermined control in a manner suggesting emotional upset (Experiment 1). These reactions lasted for at least three seconds and were especially pronounced among people reporting that they typically lose control in the context of their negative emotions (Experiment 2). The findings document a novel form of behavioural dysregulation that occurs in response to negative feedback while also highlighting the utility of motor control perspectives on self-control.
DOI: 10.6084/m9.figshare.6159281.v1
title: The negative feedback dysregulation effect: losses of motor control in response to negative feedback

description: Negative feedback has paradoxical features to it. This form of feedback can have informational value under some circumstances, but it can also threaten the ego, potentially upsetting behaviour as a result. To investigate possible consequences of the latter type, two experiments (total <i>N</i> = 159) presented positive or negative feedback within a sequence-prediction task that could not be solved. Following feedback, participants had to control their behaviours as effectively as possible in a motor control task. Relative to positive feedback, negative feedback undermined control in a manner suggesting emotional upset (Experiment 1). These reactions lasted for at least three seconds and were especially pronounced among people reporting that they typically lose control in the context of their negative emotions (Experiment 2). The findings document a novel form of behavioural dysregulation that occurs in response to negative feedback while also highlighting the utility of motor control perspectives on self-control.
DOI: 10.6084/m9.figshare.6159269
title: Evaluating the performance of habitat models for predicting the environmental flow requirements of benthic macroinvertebrates

description: Although various methods are currently available for modelling the habitat preferences of aquatic biota, studies comparing the performance of data-driven habitat models are limited. In this study, we assembled a benthic-macroinvertebrate microhabitat-preference dataset and used it to evaluate the predictive accuracy of regression-based univariate Habitat Suitability Curves (HSC), Boosted Regression Trees (BRT), Random Forests (RF), fuzzy-logic-based models using the weighted average (FLWA), maximum membership (FLMM), mean of maximum (FLM) and centroid (FLC) defuzzification algorithms and fuzzy rule-based Bayesian inference (FRB). The results show that the BRT model was the most accurate, closely followed by RF, FRB, FLM and FLMM while the FLC and FLWA algorithms had the lowest performance. However, due to the imbalanced nature of the dataset and in contrast to the fuzzy rule-based algorithms, the HSC, BRT and RF models failed to accurately predict the habitat suitability in low-scored microhabitats. We conclude that, given balanced datasets, BRT and RF can be effectively used in habitat suitability modelling. For imbalanced datasets, a properly adjusted RF model can be applied but when the input dataset is large enough to provide sufficient data-driven IF–THEN rules to train an FRB, FLMM or FLM algorithm, these models will produce the most accurate predictions.
DOI: 10.6084/m9.figshare.6159269.v1
title: Evaluating the performance of habitat models for predicting the environmental flow requirements of benthic macroinvertebrates

description: Although various methods are currently available for modelling the habitat preferences of aquatic biota, studies comparing the performance of data-driven habitat models are limited. In this study, we assembled a benthic-macroinvertebrate microhabitat-preference dataset and used it to evaluate the predictive accuracy of regression-based univariate Habitat Suitability Curves (HSC), Boosted Regression Trees (BRT), Random Forests (RF), fuzzy-logic-based models using the weighted average (FLWA), maximum membership (FLMM), mean of maximum (FLM) and centroid (FLC) defuzzification algorithms and fuzzy rule-based Bayesian inference (FRB). The results show that the BRT model was the most accurate, closely followed by RF, FRB, FLM and FLMM while the FLC and FLWA algorithms had the lowest performance. However, due to the imbalanced nature of the dataset and in contrast to the fuzzy rule-based algorithms, the HSC, BRT and RF models failed to accurately predict the habitat suitability in low-scored microhabitats. We conclude that, given balanced datasets, BRT and RF can be effectively used in habitat suitability modelling. For imbalanced datasets, a properly adjusted RF model can be applied but when the input dataset is large enough to provide sufficient data-driven IF–THEN rules to train an FRB, FLMM or FLM algorithm, these models will produce the most accurate predictions.
DOI: 10.6084/m9.figshare.6159266
title: Expression patterns of HvUBC (AK252586.1)

description: Time course of HvUBC (AK252586.1) mRNA levels in barley epidermal peels challenged with host (Bgh) and nonhost (Bgt) powdery mildew pathogens. Profile plots show quantile-normalized signal intensity values (log2transformed) from the Agilent 44k oligonucleotide array. Mean of 3 biological replicates are shown.
DOI: 10.6084/m9.figshare.6159266.v2
title: Expression patterns of HvUBC (AK252586.1)

description: Time course of HvUBC (AK252586.1) mRNA levels in barley epidermal peels challenged with host (<i>Bgh</i>) and nonhost (<i>Bgt</i>) powdery mildew pathogens. Profile plots show quantile-normalized signal intensity values (log<sub>2</sub>transformed) from the Agilent 44k oligonucleotide array. Mean of 3 biological replicates.
DOI: 10.6084/m9.figshare.6159251
title: Staff rotation in Germany and in China

description: Staff rotation as an anti-corruption policyin China and in Germany: an experimental comparison<br>
DOI: 10.6084/m9.figshare.6159251.v1
title: Staff rotation in Germany and in China

description: Staff rotation as an anti-corruption policyin China and in Germany: an experimental comparison<br>
DOI: 10.6084/m9.figshare.6159200
title: Dataset 6 - Sulfur metabolism analyses

description: Pfams document contains the sum scores of sulfur-related protein family domains of 72 species of microalgae - biclustering done using shinyheatmap on default clustering parameters. <br>Blastp fileset contains the BlastP results for MTHB gene from T. psuedonana as the query against several diatom CDSs.
DOI: 10.6084/m9.figshare.6159200.v1
title: Supplementary Data 6 - Sulfur metabolism analyses

description: Pfams document contains the sum scores of sulfur-related protein family domains of 72 species of microalgae - biclustering done using shinyheatmap on default clustering parameters. <br>Blastp fileset contains the BlastP results for MTHB gene from T. psuedonana as the query against several diatom CDSs.
DOI: 10.6084/m9.figshare.6159200.v3
title: Dataset 6 - Sulfur metabolism analyses

description: Pfams document contains the sum scores of sulfur-related protein family domains of 72 species of microalgae - biclustering done using shinyheatmap on default clustering parameters. <br>Blastp fileset contains the BlastP results for MTHB gene from T. psuedonana as the query against several diatom CDSs.
DOI: 10.6084/m9.figshare.6159200.v2
title: Supplementary Data 6 - Sulfur metabolism analyses

description: Pfams document contains the sum scores of sulfur-related protein family domains of 72 species of microalgae - biclustering done using shinyheatmap on default clustering parameters. <br>Blastp fileset contains the BlastP results for MTHB gene from T. psuedonana as the query against several diatom CDSs.
DOI: 10.6084/m9.figshare.6159182
title: Adoption of evidence-based interventions by amyotrophic lateral sclerosis patients and psychological flexibility

description: <b>Sample</b>: Thirty-five people (14 female, 21 male) aged between 34 and 73 years, with Amyotrophic Lateral Sclerosis (ALS), participated in this cross-sectional research. <b><br></b><b>Main Measures</b>: Psychological flexibility (the fundamental construct of relational frame theory [RFT]), psychological well-being, gender, country of residency, depression, anxiety, stress quality of life, and understanding and acceptance of interventions (i.e., percutaneous endoscopic gastrostomy [PEG] and non-invasive ventilation [NIV]). <b><br></b><b>Results</b>: Participants with high psychological flexibility reported lower depression, anxiety, and stress, and higher quality of life. In addition, psychological flexibility was predictive of participants’ understanding and acceptance of a PEG as an intervention option. Applied RFT may be helpful for clients with ALS.<br>