cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0166360.10fu
title: SH0166360.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0166361.10fu
title: SH0166361.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ygamyz
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is Zimbabwe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyphostemma (Planch.) Alston"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238307-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tk95d
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Crepis napifera (Franch.) Babc."
 ]
}

 The dataset includes 177 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281777-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jymtdf
title: Occurrence Download

description: A dataset containing 870 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Cobitis taenia Linnaeus, 1758",
 "StateProvince is England",
 "Year 2000-2020"
 ]
}

 The dataset includes 870 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005569-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ku74pn
title: Occurrence Download

description: A dataset containing 13518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helianthus annuus L.",
 "Country is one of (United States of America, Canada)",
 "Year is greater than or equal to 1979"
 ]
}

 The dataset includes 13518 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228721-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgze4n
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Dolomiaea crispo-undulata (C.C.Chang) Y.Ling"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301166-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wx6dg
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Typha angustifolia L.",
 "Year 2011-2021"
 ]
}

 The dataset includes 696 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304809-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duh64k
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-72.57362 -16.23505,-72.3278 -16.23505,-72.3278 -15.96451,-72.57362 -15.96451,-72.57362 -16.23505))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingCountry is Peru",
 "TaxonKey is Animalia",
 "Year 1930-2018"
 ]
}

 The dataset includes 130 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324201-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s83nj2
title: Occurrence Download

description: A dataset containing 90590 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((12.52189 55.69965,12.52622 55.69958,12.53343 55.70068,12.53775 55.70335,12.54057 55.70754,12.5418 55.71743,12.53816 55.72306,12.52725 55.72443,12.52079 55.72306,12.51489 55.71812,12.5129 55.70967,12.5153 55.70493,12.52189 55.69965))"
 ]
}

 The dataset includes 90590 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0309255-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p228n9
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Macrostemum hyalinum (Pictet, 1836)"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297049-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbbp6c
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-80.39596 -39.63267,-65.05506 -39.63267,-65.05506 -28.44659,-80.39596 -28.44659,-80.39596 -39.63267))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pouteria splendens (A.DC.) Kuntze"
 ]
}

 The dataset includes 36 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063620-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.upwhwk
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 {
 "or" : [
 "Country is Japan",
 "Country is Russian Federation"
 ]
 },
 {
 "or" : [
 "DatasetKey is Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan",
 "DatasetKey is The 2-5th National Survey on the Natural Environment: Vegetation Survey",
 "DatasetKey is The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "DatasetKey is The 6-7th National Survey on the Natural Environment: Vegetation Survey",
 "DatasetKey is Moscow University Herbarium (MW)",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "DatasetKey is Royal Botanic Gardens, Kew - Herbarium Specimens",
 "DatasetKey is Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture",
 "DatasetKey is Plant specimens of Otaru Museum",
 "DatasetKey is Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan"
 ]
 },
 "TaxonKey is Picea glehnii (F.Schmidt) Mast."
 ]
}

 The dataset includes 331 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324216-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwc1ym
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacteria",
 "DecimalLatitude is greater than 41.1343186173584",
 "DecimalLatitude is less than 41.6823475465795",
 "DecimalLongitude is greater than -76.0336592521927",
 "DecimalLongitude is less than -75.3069136670486"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005472-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agpnz4
title: Occurrence Download

description: A dataset containing 1309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.375 51.575,4.425 51.575,4.425 51.625,4.375 51.625,4.375 51.575))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1309 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304827-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pamadt
title: Occurrence Download

description: A dataset containing 2515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Asplenium billotii F.W.Schultz",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2515 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006137-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2m5cxc
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((31.25702 46.63605,32.07733 46.66534,32.2934 47.67242,31.51337 48.24738,30.8432 48.04596,31.12518 46.94733,31.25702 46.63605))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dolichophis caspius (Gmelin, 1789)",
 "Year 1000-2019"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281785-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7aexf
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Martes martes (Linnaeus, 1758)",
 "Year 1970-1980"
 ]
}

 The dataset includes 66 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312400-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lfa9kf
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Garcinia kola Heckel"
 ]
}

 The dataset includes 399 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006137-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7vzpt
title: Occurrence Download

description: A dataset containing 122314 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Viperidae",
 "TaxonKey is Elapidae",
 "TaxonKey is Natricidae",
 "TaxonKey is Lamprophiidae",
 "TaxonKey is Colubridae"
 ]
 },
 "Year 2020-2021"
 ]
}

 The dataset includes 122314 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292657-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49pwy4
title: Occurrence Download

description: A dataset containing 738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.375 51.525,4.425 51.525,4.425 51.575,4.375 51.575,4.375 51.525))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 738 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0304829-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1lgdfd
title: Occurrence Download

description: A dataset containing 290909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "DatasetKey is Tropicos MO Specimen Data"
 ]
}

 The dataset includes 290909 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006137-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gscx7a
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Saara hardwickii (Gray, 1827)"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292664-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1wz-b89-tdt
title: Doryopteris lorentzii (Hieron.) Diels

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/fdw-wsj-lr0
title: Achillea abrotanoides (Vis.) Vis.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/08r-r2w-sdl
title: Psiadia dracaenifolia Humbert

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rpr-ylc-mhc
title: Piper abalienatum Trel.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/yw3-saj-nwj
title: Graecobolanthus laconicus (Boiss.) Madhani & Zarre

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hy6-sq0-4yh
title: Abolboda grandis var. rigida Malme

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qjg-k4v-cxn
title: Abolboda ebracteata var. brevifolia Maguire

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.u7xeu5
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes (Mart.) Solms",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112577-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/s1l-59n-123
title: Lytoneuron bradei (Rosenst.) Yesilyurt

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/wer-4d3-ml4
title: Lytoneuron bradei (Rosenst.) Yesilyurt

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kbp-nfz-9tf
title: Brachypodium sylvaticum (Huds.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/wp4-acs-42m
title: Phlegmariurus coralium (Spring) A. R. Field & Bostock

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/0jw-4a7-tq1
title: Strigula smaragdula Fr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hzt-gfp-6k4
title: Strigula smaragdula Fr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/e13-dgj-ln5
title: Onobrychis degenii Dörfl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.pyt2fs
title: Occurrence Download

description: A dataset containing 2350341 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassulaceae"
 ]
}

 The dataset includes 2350341 records from 4087 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112521-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gkktv
title: Occurrence Download

description: A dataset containing 925417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Year is 2002"
 ]
}

 The dataset includes 925417 records from 397 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008484-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17462734
title: The main Python codes for PIPE and derived 142 paired events

description: This project is an automated Python data processing PIPE workflow designed to identify and quantify precipitation-inundation paired events, mainly including 3 process:  extreme precipitation events extraction, inundation area extraction and 'precipitation-inundation' events pairing. This project consists of three sequential Python scripts and one final CSV output table.

The workflow begins with Precip_Extraction.py, then Inundation_Extraction.py and finally, Paired_Events.py, producing the results to the final output file, Final_Paired_Events.csv.

To run these scripts, you will need to provide your own input data, including: original annual NetCDF precipitation files, basic geospatial shapefiles (like the basin boundary), hydrological shapefiles (river network and catchment units), original daily surface water rasters, and a surface water body occurrence raster.

The included Final_Paired_Events.csv file is the final dataset generated by this workflow. It contains the 142 paired events identified. Each row represents a single paired event, detailing its precipitation dates (Precip_Start_Date, Precip_End_Date), the corresponding minimum and maximum inundation dates (Min_Date, Max_Date), the total precipitation volume (Total_Water_Aligned), the calculated net inundation area (Inundation_Omission_Filled), the Inundation-Precipitation Ratio (IPR), the precipitation's spatial centroid (Lon_C), and the final comprehensive Certainty score for the pairing.

For more details, please refer to:J. Su, P. Lin, K. Zheng, X. Lei, Z. Yin, A. Hou, S. Xie (2025, in review). Observation-Based Spatiotemporal Analysis of the Evolving Flood Regulation Capacity for the Yangtze River Basin.
DOI: 10.5281/zenodo.17462735
title: The main Python codes for PIPE and derived 142 paired events

description: This project is an automated Python data processing PIPE workflow designed to identify and quantify precipitation-inundation paired events, mainly including 3 process:  extreme precipitation events extraction, inundation area extraction and 'precipitation-inundation' events pairing. This project consists of three sequential Python scripts and one final CSV output table.

The workflow begins with Precip_Extraction.py, then Inundation_Extraction.py and finally, Paired_Events.py, producing the results to the final output file, Final_Paired_Events.csv.

To run these scripts, you will need to provide your own input data, including: original annual NetCDF precipitation files, basic geospatial shapefiles (like the basin boundary), hydrological shapefiles (river network and catchment units), original daily surface water rasters, and a surface water body occurrence raster.

The included Final_Paired_Events.csv file is the final dataset generated by this workflow. It contains the 142 paired events identified. Each row represents a single paired event, detailing its precipitation dates (Precip_Start_Date, Precip_End_Date), the corresponding minimum and maximum inundation dates (Min_Date, Max_Date), the total precipitation volume (Total_Water_Aligned), the calculated net inundation area (Inundation_Omission_Filled), the Inundation-Precipitation Ratio (IPR), the precipitation's spatial centroid (Lon_C), and the final comprehensive Certainty score for the pairing.

For more details, please refer to:J. Su, P. Lin, K. Zheng, X. Lei, Z. Yin, A. Hou, S. Xie (2025, in review). Observation-Based Spatiotemporal Analysis of the Evolving Flood Regulation Capacity for the Yangtze River Basin.