cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22266772.v2
title: Adsorption of Pb (II) ions on Variable Charge Oxidic Calcined Substrates with Chemically Modified Surface

description: The adsorption process is an alternative for treating natural and waste waters, with heavy metals. Oxidic lithological materials, rich in iron and aluminum amphoteric oxides, with pH-dependent surface charges, are a reliable medium for ionic adsorption. Being thermal resistant, these materials can be used to prepare a calcined substrate which is chemically treated in an acid or alkaline medium to enlarge surface positive or negative charge density, being possible anion or cation adsorption from aqueous solution. Oxidic lithological materials use is a low-cost alternative for filtering system because of its availability and easiness preparation and application. Present paper shows results of the adsorption reaction of Pb<sup>+2</sup> ions on calcined substrates prepared with oxidic lithologic material. The study was performed on the substrate with chemically modified surface in alkaline medium as well on non-treated surface. Results show L-type isotherms for the adsorption on the activated substrate, indicative affinity between adsorbate and adsorbent. Average value of k for activated substrate is around 3.7 times greater (1791.73±13.06 with an RSD of 0.72%) compared to the respective average k value for the non-activated substrate (491.54±31.97 with a DER of 6.5%). Protons are produced during the adsorption reaction, 0.35 and 0.26 molH<sup>+</sup> are produced in the reaction on the activated and non-activated substrate respectively using a 1 mM Pb<sup>+2</sup> solution and y 72.2 and 15.6 molH<sup>+</sup> using a 10 mM Pb<sup>+2</sup> solution. Acidification agrees with theoretic model of transitional metals chemisorption on amphoteric oxides of Fe, Al, Ti and Mn present in lithological material used for the preparation of adsorbent substrates confirming the information given by the L type isotherms.
DOI: 10.6084/m9.figshare.22266772.v1
title: Adsorption of Pb (II) ions on Variable Charge Oxidic Calcined Substrates with Chemically Modified Surface

description: The adsorption process is an alternative for treating natural and waste waters, with heavy metals. Oxidic lithological materials, rich in iron and aluminum amphoteric oxides, with pH-dependent surface charges, are a reliable medium for ionic adsorption. Being thermal resistant, these materials can be used to prepare a calcined substrate which is chemically treated in an acid or alkaline medium to enlarge surface positive or negative charge density, being possible anion or cation adsorption from aqueous solution. Oxidic lithological materials use is a low-cost alternative for filtering system because of its availability and easiness preparation and application. Present paper shows results of the adsorption reaction of Pb<sup>+2</sup> ions on calcined substrates prepared with oxidic lithologic material. The study was performed on the substrate with chemically modified surface in alkaline medium as well on non-treated surface. Results show L-type isotherms for the adsorption on the activated substrate, indicative affinity between adsorbate and adsorbent. Average value of k for activated substrate is around 3.7 times greater (1791.73±13.06 with an RSD of 0.72%) compared to the respective average k value for the non-activated substrate (491.54±31.97 with a DER of 6.5%). Protons are produced during the adsorption reaction, 0.35 and 0.26 molH<sup>+</sup> are produced in the reaction on the activated and non-activated substrate respectively using a 1 mM Pb<sup>+2</sup> solution and y 72.2 and 15.6 molH<sup>+</sup> using a 10 mM Pb<sup>+2</sup> solution. Acidification agrees with theoretic model of transitional metals chemisorption on amphoteric oxides of Fe, Al, Ti and Mn present in lithological material used for the preparation of adsorbent substrates confirming the information given by the L type isotherms.
DOI: 10.6084/m9.figshare.22006535
title: AI & Higher Education

description: AI attitudes and education
DOI: 10.6084/m9.figshare.22700767
title: Part 3.zip

description: This directory compiles raw and source data supporting figures from Fuchs et al. "Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN".
DOI: 10.6084/m9.figshare.22700770
title: Part 2.zip

description: This directory compiles raw and source data supporting figures from Fuchs et al. "Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN".
DOI: 10.6084/m9.figshare.22700770.v1
title: Part 2.zip

description: This directory compiles raw and source data supporting figures from Fuchs et al. "Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN".
DOI: 10.6084/m9.figshare.22698151
title: Part 1.zip

description: This directory compiles raw and source data supporting figures from Fuchs et al. "Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN".
DOI: 10.5522/04/22654162
title: Supporting Solar Energy Coordination among Communities

description: This data is supplementary material to the paper "Supporting Solar Energy Coordination among Communities". <br> The dataset contains the transcripts of five workshops in which participants discuss the possiblity of creating an energy community around a shared solar panel (the sixth workshop trascript is not included for anonymity reasons). They also contain the energy annotations of 14 households. <br> <br>
DOI: 10.5522/04/22654162.v1
title: Supporting Solar Energy Coordination among Communities

description: This data is supplementary material to the paper "Supporting Solar Energy Coordination among Communities". <br> The dataset contains the transcripts of five workshops in which participants discuss the possiblity of creating an energy community around a shared solar panel (the sixth workshop trascript is not included for anonymity reasons). They also contain the energy annotations of 14 households. <br> <br>
DOI: 10.5281/zenodo.7793308
title: Datasets of fitted toy Monte Carlo samples for "Gaussian Process-based calculation of look-elsewhere trials factor"

description: For the paper "Gaussian Process-based calculation of look-elsewhere trials factor", we generated and fitted a number of toy Monte Carlo samples which can be used to reproduce figures from the paper or do tests of hypotheses inspired by the method suggested in the article. Together with the hdf5 files containing the samples, we also provide a Jupyter notebook which was used to produce the figures.
description: changes: in images.ipynb we added axis labels to the 2D model covariance plots.
DOI: 10.5281/zenodo.7793309
title: Datasets of fitted toy Monte Carlo samples for "Gaussian Process-based calculation of look-elsewhere trials factor"

description: For the paper "Gaussian Process-based calculation of look-elsewhere trials factor", we generated and fitted a number of toy Monte Carlo samples which can be used to reproduce figures from the paper or do tests of hypotheses inspired by the method suggested in the article. Together with the hdf5 files containing the samples, we also provide a Jupyter notebook which was used to produce the figures.
DOI: 10.5281/zenodo.7861345
title: Datasets of fitted toy Monte Carlo samples for "Gaussian Process-based calculation of look-elsewhere trials factor"

description: For the paper "Gaussian Process-based calculation of look-elsewhere trials factor", we generated and fitted a number of toy Monte Carlo samples which can be used to reproduce figures from the paper or do tests of hypotheses inspired by the method suggested in the article. Together with the hdf5 files containing the samples, we also provide a Jupyter notebook which was used to produce the figures.
description: changes: in images.ipynb we added axis labels to the 2D model covariance plots.
DOI: 10.5281/zenodo.7868179
title: Failure without tears: Two-step attachment in a climbing cactus

description: Climbing plants can be extremely adaptable to diverse habitats and capable of colonizing perturbed, unstructured and even moving environments. The timing of the attachment process, whether instantaneous (e.g., a pre-formed hook) or slow (growth process) crucially depends on the environmental context and the evolutionary history of the group concerned. We observed how spines and adhesive roots develop and tested their mechanical strength in the climbing cactus <em>Selenicereus setaceus</em> (Cactaceae) in its natural habitat. Spines are formed on the edges of the triangular cross section of the climbing stem and originate in soft axillary buds (areoles). Roots are formed in the inner hard core of the stem (wood cylinder) and grow via tunnelling through soft tissue, emerging from the outer skin. We measured maximal spine strength and root strength via simple tensile tests using a field measuring Instron device. Spine and root strengths differ, and this has a biological significance for the support of the stem. Our measurements indicate that the measured mean strength of a single spine could theoretically support an average force of 2.8 N. This corresponds to an equivalent stem length of 2.62 m (mass of 285 g). The measured mean strength of root could theoretically support an average of 13.71 N. This corresponds to a stem length of 12.91 m (mass of 1398 g). We introduce the notion of two-step attachment in climbing plants. In this cactus, the first step deploys hooks to attach to a substrate; this process is instantaneous and is highly adapted for moving environments. The second step involves root growth for more solid attachment to the substrate; this process involves “slow” root growth and adhesion. The advantage of the two-step strategy is that fast hook attachment can steady the plant for the slower root attachment. This strategy is effective in highly variable and heterogeneous environments when climbing plants are faced with constant moving and perturbed environmental conditions in many ecosystems. We discuss how two-step mechanisms are of interest for technical anchoring applications particularly for “soft-bodied” artefacts, which have to deploy hard and stiff materials originating from a soft compliant body and where tasks involving attachment take place in highly unstable and unpredictable environments.
description: We discuss how two-step mechanisms are of interest for technical anchoring applications particularly for "soft-bodied" artefacts, which have to deploy hard and stiff materials originating from a soft compliant body and where tasks involving attachment take place in highly unstable and unpredictable environments.
DOI: 10.5281/zenodo.7868178
title: Failure without tears: Two-step attachment in a climbing cactus

description: Climbing plants can be extremely adaptable to diverse habitats and capable of colonizing perturbed, unstructured and even moving environments. The timing of the attachment process, whether instantaneous (e.g., a pre-formed hook) or slow (growth process) crucially depends on the environmental context and the evolutionary history of the group concerned. We observed how spines and adhesive roots develop and tested their mechanical strength in the climbing cactus <em>Selenicereus setaceus</em> (Cactaceae) in its natural habitat. Spines are formed on the edges of the triangular cross section of the climbing stem and originate in soft axillary buds (areoles). Roots are formed in the inner hard core of the stem (wood cylinder) and grow via tunnelling through soft tissue, emerging from the outer skin. We measured maximal spine strength and root strength via simple tensile tests using a field measuring Instron device. Spine and root strengths differ, and this has a biological significance for the support of the stem. Our measurements indicate that the measured mean strength of a single spine could theoretically support an average force of 2.8 N. This corresponds to an equivalent stem length of 2.62 m (mass of 285 g). The measured mean strength of root could theoretically support an average of 13.71 N. This corresponds to a stem length of 12.91 m (mass of 1398 g). We introduce the notion of two-step attachment in climbing plants. In this cactus, the first step deploys hooks to attach to a substrate; this process is instantaneous and is highly adapted for moving environments. The second step involves root growth for more solid attachment to the substrate; this process involves “slow” root growth and adhesion. The advantage of the two-step strategy is that fast hook attachment can steady the plant for the slower root attachment. This strategy is effective in highly variable and heterogeneous environments when climbing plants are faced with constant moving and perturbed environmental conditions in many ecosystems. We discuss how two-step mechanisms are of interest for technical anchoring applications particularly for “soft-bodied” artefacts, which have to deploy hard and stiff materials originating from a soft compliant body and where tasks involving attachment take place in highly unstable and unpredictable environments.
description: We discuss how two-step mechanisms are of interest for technical anchoring applications particularly for "soft-bodied" artefacts, which have to deploy hard and stiff materials originating from a soft compliant body and where tasks involving attachment take place in highly unstable and unpredictable environments.
DOI: 10.6084/m9.figshare.22351381
title: Anaerobic oxidation of methane does not attenuate methane emissions from thermokarst lakes

description: The following data support the study: Anaerobic oxidation of methane does not attenuate methane emissions from thermokarst lakes (2023), Limnology and Oceanography (Wiley). A detailed description of the data, including methodology and interpretation, is available within the article (DOI: http://doi.org/10.1002/lno.12349 ). Authors: Noam Lotem, André Pellerin, Katey Walter Anthony, Almog Gafni, Valeria Boyko, and Orit Sivan.
DOI: 10.6084/m9.figshare.22351381.v1
title: Anaerobic oxidation of methane does not attenuate methane emissions from thermokarst lakes

description: The following data support the study: Anaerobic oxidation of methane does not attenuate methane emissions from thermokarst lakes (2023), Limnology and Oceanography (Wiley). A detailed description of the data, including methodology and interpretation, is available within the article (DOI: http://doi.org/10.1002/lno.12349 ). Authors: Noam Lotem, André Pellerin, Katey Walter Anthony, Almog Gafni, Valeria Boyko, and Orit Sivan.
DOI: 10.6084/m9.figshare.14611626
title: Supplemental Material 2 -Data Extraction Sheet.xlsx

description: Data extraction for the systematic review focusing on quality indicators for dementia and older people nearing end of life (PROSPERO Registration: CRD42020170296CRD42020170296)
DOI: 10.6084/m9.figshare.14611626.v1
title: Supplemental Material 2 -Data Extraction Sheet.xlsx

description: Data extraction for the systematic review focusing on quality indicators for dementia and older people nearing end of life (PROSPERO Registration: CRD42020170296CRD42020170296)
DOI: 10.23728/b2share.429af0b834a54a2e824935fb3b1ea518
title: Undetected BVOCs from Norway spruce drive total ozone reactivity measurements

description: Biogenic Volatile Organic Compounds (BVOCs) are continuously emitted from terrestrial vegetation into the atmosphere and react with various atmospheric oxidants, with ozone being an important one. The reaction between BVOCs and ozone can lead to low volatile organic compounds, other pollutants, and the formation of secondary organic aerosols. To understand the chemical and physical processes taking place in the atmosphere, a complete picture of the BVOCs emitted is necessary. However, the large pool of BVOCs present makes it difficult to detect every compound. The total ozone reactivity method can help understand the ozone reactive potential of all BVOCs emitted into the atmosphere and also help determine if current analytical techniques can measure the total BVOC budget. In this study, we measured the total ozone reactivity from the emissions of a Norway spruce tree in Hyytiälä in late summer using the Total Ozone Reactivity Monitor (TORM) built at the Finnish Meteorological Institute (FMI). We also conducted chemical characterisation and quantification of the BVOC emissions using a gas chromatograph coupled with a mass spectrometer (GC-MS). The measured total ozone reactivity reached up to 7.3 $\times$ 10$^{-9}$ \unit{m^{3}\,s^{-2}\,g^{-1}}, which corresponds to 64 \unit{\mu g\,g^{-1}\,h^{-1}} of \chem{\alpha}-pinene. Stress-related sesquiterpenes such as \chem{\beta}-farnesene and \chem{\alpha}-farnesene, and an unidentified sesquiterpene contributed the most to the observed emissions. However, the observed emissions made up only 35\% of the measured total ozone reactivity, with sesquiterpenes being the most important sink for the ozone. High total ozone reactivity was especially seen during high temperature periods, with up to 95\% of the reactivity remaining unexplained. Emissions of unidentified stress-related compounds could be the reason for the high fraction of missing reactivity
DOI: 10.5281/zenodo.7868146
title: Online Panel Participation SPSS Dataset

description: The provided dataset consists of 454 cases collected for the research of participation in non-probability online research panels. The dataset includes the following variables: Demographics variables The following demographic variables are included: participants' age, gender, level of education, and working status. Trust Scale The six-item General Trust Scale (Yamagishi, T., & Yamagishi, M., 1994) is used to examine the general level of trust of the respondents. Big Five Scale BFI-S (15 items) measuring the Big Five personality characteristics of the participants Online panel participation Online panel participation is measured with one categorical variable. Social media use Social media use is measured with one categorical variable exploring the duration of daily time spent on social media.
DOI: 10.5281/zenodo.7868145
title: Online Panel Participation SPSS Dataset

description: The provided dataset consists of 454 cases collected for the research of participation in non-probability online research panels. The dataset includes the following variables: Demographics variables The following demographic variables are included: participants' age, gender, level of education, and working status. Trust Scale The six-item General Trust Scale (Yamagishi, T., & Yamagishi, M., 1994) is used to examine the general level of trust of the respondents. Big Five Scale BFI-S (15 items) measuring the Big Five personality characteristics of the participants Online panel participation Online panel participation is measured with one categorical variable. Social media use Social media use is measured with one categorical variable exploring the duration of daily time spent on social media.
DOI: 10.5066/p9fzjzxu
title: Spatial characteristics of Piping Plover nest sites in the U.S. Prairie Pothole Region data, 2000-2019

description: This data is a companion to the manuscript titled "Data integration reveals dynamic and systematic patterns of breeding habitat use by a threatened shorebird". Advances in both remote sensing and analytical tools for spatial data have allowed for the integration of dynamic processes into species distribution models. We developed a spatiotemporal model of breeding habitat use and density for a federally threatened shorebird (piping plover, Charadrius melodus) by integrating a 20-year (2000 – 2019) nesting dataset with opportunistic, volunteer collected (eBird), sightings. Piping plovers are an ideal candidate for dynamic habitat models because this species depends on habitat created and maintained by highly variable hydrological processes and disturbance.
DOI: 10.5281/zenodo.7641587
title: Newick Trees for EMERGE methanogen genome tree, and methylotrophic gene trees

description: Newick trees provided for phylogenomic and phylogenetic analyses from Ellenbogen <em>et al. </em>(in prep). The methanogen genome tree (gtdbtk.ar53.decorated.tree) was built using a GTDB-Tk v12.1.1 r207 run with the de novo workflow. All other trees are RAxML gene trees built using ProtPipeliner (https://github.com/TheWrightonLab/Protpipeliner/blob/master/protpipeliner.py) to confirm the functional identity of identified methylotrophic genes from methanogens and bacteria. The names of the Newick trees correspond to relevant gene groupings as discussed in the associated manuscript. DRAM v1.3.2 raw annotations files for Stordalen methanogen MAGs also included. FUNDING:<br> This research is a contribution of the EMERGE Biology Integration Institute, funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.<br> We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.<br> This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0010580 and DE-SC0016440.
DOI: 10.5281/zenodo.7641588
title: Newick Trees for EMERGE methanogen genome tree, and methylotrophic gene trees

description: Newick trees provided for phylogenomic and phylogenetic analyses from Ellenbogen <em>et al. </em>(in prep). The methanogen genome tree (Newick_tree_for_methanogen_genome_tree.suptree) was built using an alignment generated with GTDB-Tk v1.5.0 r202, and the tree made using IQ Tree v1.6.12. All other trees are RAxML gene trees built using ProtPipeliner (https://github.com/TheWrightonLab/Protpipeliner/blob/master/protpipeliner.py) to confirm the functional identity of identified methylotrophic genes from methanogens and bacteria. The names of the Newick trees correspond to relevant gene groupings as discussed in the associated manuscript. FUNDING:<br> This research is a contribution of the EMERGE Biology Integration Institute, funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.<br> We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.<br> This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0010580 and DE-SC0016440.
DOI: 10.5281/zenodo.7841423
title: Newick Trees for EMERGE methanogen genome tree, and methylotrophic gene trees

description: Newick trees provided for phylogenomic and phylogenetic analyses from Ellenbogen <em>et al. </em>(in prep). The methanogen genome tree (gtdbtk.ar53.decorated.tree) was built using a GTDB-Tk v12.1.1 r207 run with the de novo workflow. All other trees are RAxML gene trees built using ProtPipeliner (https://github.com/TheWrightonLab/Protpipeliner/blob/master/protpipeliner.py) to confirm the functional identity of identified methylotrophic genes from methanogens and bacteria. The names of the Newick trees correspond to relevant gene groupings as discussed in the associated manuscript. FUNDING:<br> This research is a contribution of the EMERGE Biology Integration Institute, funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.<br> We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council's grant 4.3-2021-00164.<br> This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0010580 and DE-SC0016440.