cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/dsqc8n
title: Dataset used in DeepIndices

description: This dataset inclue multi-spectral acquisition of vegetation for the conception and evaluation of new DeepIndices over un-calibrated data. The images were acquired with the Airphen (Hyphen, Avignon, France) six-band multi-spectral camera configured using the 450/570/675/710/730/850 nm bands with a 10 nm FWHM. The dataset were taken on the site of INRAe in Montoldre (Allier, France, at 46°20'30.3"N 3°26'03.6"E) within the framework of the “RoSE challenge” founded by the French National Research Agency (ANR) and in Dijon (Burgundy, France, at 47°18'32.5"N 5°04'01.8"E) within the site of AgroSup Dijon. Images of bean and corn, containing various natural weeds (yarrows, amaranth, geranium, plantago, etc) and sowed ones (mustards, goosefoots, mayweed and ryegrass) with very distinct characteristics in terms of illumination (shadow, morning, evening, full sun, cloudy, rain, ...) were acquired in top-down view at 1.8 meter from the ground.
DOI: 10.15454/eptdos
title: Transposable Elements prediction and annotation in the M. incognita genome

description: This datasets contains all the essential files produced during the TE prediction, annotation, and post-processing in the M. incognita genome (e.g. TE consensus library, TE annotations, and associated statistics). Also contains the global workflow (used command lines), the REPET configuration files (with parameters) used for this analysis and the in-house python script used to identify canonical TE annotations using TE consensus library and draft TE annotation (REPET output). Download: In order to preserve the folder and file tree structure (easier to reproduce the analyses), select all the files and click on download (original format). The download of a .zip archive should start. Once downloaded, extract the contents of the archive.
DOI: 10.15454/ewjct8
title: TE polymorphisms detection and analysis

description: This dataset contains i) output files from "Kozlowski D. 2020a. Transposable Elements prediction and annotation in the M. incognita genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/EPTDOS", "Kozlowski D. 2020b. Transposable Elements prediction and annotation in the C. elegans genome. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/LQCIW0", and "These analyses are presented in detail in Kozlowski D, Da Rocha M, Danchin E. 2020. TE-related genes: annotation, characterisation, and expression. Portail Data INRAE [Internet]. Available from: https://doi.org/10.15454/DLDJVF" ; ii) popoolationTE2 workflow used to detect polymorphism across M. incognita's isolates and evaluate the tool error rate; iii) the global analysis workflow and associated results; and iv) the produced figures. Download: In order to preserve the folder and file tree structure (easier to reproduce the analyses), select all the files and click on download (original format). The download of a .zip archive should start. Once downloaded, extract the contents of the archive.
DOI: 10.15454/eyabb2
title: T2 relaxation time raw data of water-imbibed Arabidopsis seeds - dataset 2

description: The dataset_2 comprises NMR raw data acquired on 19 accessions having atypical outer mucilage properties (Fabrissin et al., 2019). Accessions are from the Versailles Arabidopsis stock center (http://publiclines.inra.fr/naturalAccession/index) and are listed by their Versailles identification number in a four-digit format. Seed lots were produced from plants in two cultivations series c or d. Each raw data file is identified by a name which is the combination of the seed lot (lot2), the cultivation serie (C or D) followed by “imb-“, the imbibition time (t0 or H23) and the accession code. Data correspond to intact seeds imbibed in water (code 6). Data were recorded using a Time-Domain spectrometer (Minispec BRUKER, Germany) operating at 0.47T (resonance frequency of 20 MHz) at 20°C. The FID-CPMG sequence was used using the following parameters : a 90° pulse close to 2.8 µs, a dwell time of 0.4 µs for a FID duration of 60 µs, 16 scans, a recycle delay of 5 s, an echo time of 0.2 ms with 8000 or 5000 data points, depending on the imbibition time.
DOI: 10.15454/iiaqow
title: Annotated list of species used in this study

description: Annotated list of the 63 species used in the Orthofinder comparative analysis of nematodes (61 species) and two tardigrade species as out-groups. Description: Lines 1-64, definition of columns - Abbrev Species: abbreviated species name. Species identifiers used in all the Orthofinder analysis. - Species: Latin species name. - BUSCO%: percentage of core eukaryotic proteins (odb9) found in full length by BUSCO V3 in the proteome. - Proteins: number of predicted proteins - Taxo: taxonomic group - Hclade: Helder Clade classification according to 'Van Megen et al. A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. Nematology. 2009' - Bclade: Blaxter Clade classification according to '' - Lifestyle: feeding style of the species - Source: origin of the proteome file - Reference: bibliographic references associated to the species genome paper Lines 66-108: full bibliographic refernces with Authors, Title, Journal and Year
DOI: 10.15454/buv0db
title: Données des relevées d’adventices en fermeture de couvert sur les parcelles en cultures annuelles de l’Installation Expérimentale ASTER-Mirecourt entre 2008 et 2016

description: Sur le parcellaire de l’IE ASTER environ 70 zones de fertilité ont été identifiées (zones intra-parcellaires de 90 mètres carrés, choisies pour être représentatives d’une combinaison « système de culture x type de sol). Sur ces zones de fertilité, des relevés de flore adventice ont été systématiquement réalisés sur les parcelles assolées avec une culture annuelle de 2008 à 2016. Au total, 106 espèces ont été observées et caractérisées selon l’échelle Barralis (modifiée pour prendre en compte les espèces non observées). Ces espèces ont été regroupées en 7 groupes fonctionnels utilisés pour réaliser un travail de typologie des flores spontanées.
DOI: 10.15454/e3t1as
title: A Database with traits relative to the adaptation of growing pigs to challenging environmental conditions (nutritional challenges)

description: Performances measurements obtained from an experimental study conducted in the framework of the FEED-A-GENE project (WP2). This study was initially designed to evaluate the effects of a short-term dietary challenge in growing pigs based on an abrupt transition from a normal diet to a dilute, low-nutrient density fibrous diet.
DOI: 10.15454/gysgnr
title: Vitis vinifera cv. Riesling developmental stages

description: Budbreak, flowering and véraison dates for the grapevine variety Riesling were recorded since 1958 at the same location: the INRA experimental vineyard in Bergheim (Haut-rhin, France). It includes data from several experiments including RIxGW section I (https://urgi.versailles.inra.fr/ephesis/ephesis/viewer.do#dataResults/trialSetIds=23) and Bergheim Ampélographique collection (https://urgi.versailles.inra.fr/ephesis/ephesis/viewer.do#trialCard/trialId=821).
DOI: 10.15454/h8vjcm
title: Maturity analysis of the Rhone Valley vineyards since 1969

description: This dataset includes maturity analyses of grapevine berries from plots of Rhone Valley vineyards since 1969. These data are provided by Inter Rhône, ODG Châteauneuf du Pape, and are evolving and enriched each year.
DOI: 10.15454/izvijx
title: Pre- and post-treatment of lignocellulosic material

description: Data provided is related to Task 3.4, Deliverable n°: 3.4 aimed at investigating the pretreatment of straw and other fibrous biomass prior to AD in order to improve the performance of conventional anaerobic digestion of recalcitrant fractions of agricultural waste, such as wheat straw. Moreover, bioethanol production from the anaerobically digested straw through the enzymatic utilization of the remaining fibre was also investigated in order to add value to the AD process through the exploitation of digestate as a bio-energy source.
DOI: 10.15454/j9h4bs
title: Données de réplication pour : Biogeography of soil bacteria and archaea across France

description: These data concern the study 'Biogeography of soil bacteria and archaea across France' Karimi B, Terrat S, Dequiedt S, Saby NPA, Horrigue W, Lelièvre M, Nowak V, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Maron PA, Bouré NCP, Ranjard L. Sci Adv. 2018 Jul 4;4(7):eaat1808. doi: 10.1126/sciadv.aat1808 and is based on data from the RMQS program (French Soil Quality Monitoring Network). The French Soil Quality Monitoring Network (RMQS) is a national program for the assessment and long-term monitoring of the quality of French soils. This network is based on the monitoring of 2240 sites representative of French soils and their land use. These sites are spread over the whole French territory (metropolitan and overseas) along a systematic square grid of 16 km x 16 km cells. The network covers a broad spectrum of climatic, soil and land-use conditions (croplands, permanent grasslands, woodlands, orchards and vineyards, natural or scarcely anthropogenic land and urban parkland). The physical, chemical and biological properties of the soil are measured on each site. These soil analyses were carried out by the Soil Analysis Laboratory of INRAE (Arras, France). The spatial and temporal variability of soil properties are explained by biophysical variables, sources of contamination, history of land-use and management practices on each plot. The first sampling campaign in metropolitan France took place from 2000 to 2009 and the second campaign has begun in 2016. At each site, 25 core samples were taken by layer with an auger within a 20 m × 20 m plot and combined into a composite sample. Analyses used in this study only concern the surface layer (generally 0–30 cm layer) of samplings from the first campaign in metropolitan France. The dataset published contains all the raw data used in the statistical analysis in order to make them available for any further study. The table contains soil properties, observations on land use, and coordinates. We warn the user that coordinates published here are not the right coordinates, the RMQS site can be located until 1 km around this point. Real coordinates can not be made publicly available because of confidential information.
DOI: 10.15454/je7yy4
title: Worldwide Food Science and Technology on pulses and soya : a bibliometric dataset (1956-2017)

description: A bibliometric corpus of 39,036 records (UT codes) retrieved and cleaned from the Web of Knowledge (WoS), dealing with main topics of the Food Science and Technology field, on pulses (18 species and varieties of pulses cultivated in temperate climates considered) and soya. The corpus gathers records such as articles, book, book chapters, and reviews, in the world. Note that the search queries used excluded the soya oil topics. Those search queries are available in another dataset. The methodology applied to retrieve and clean those bibliometrics data is explained in Magrini et al. (2019): https://doi.org/10.3390/su11236833
DOI: 10.15454/jmkp9s
title: Multi-Spectral Leaf Segmentation For Crop/Weed Identification

description: This dataset were acquired with the Airphen (Hyphen, Avignon, France) six-band multi-spectral camera configured using the 450/570/675/710/730/850 nm bands with a 10 nm FWHM. And acquired on the site of INRAe in Montoldre (Allier, France, at 46°20'30.3"N 3°26'03.6"E) within the framework of the “RoSE challenge” founded by the French National Research Agency (ANR). Images contains bean, with various natural weeds (yarrows, amaranth, geranium, plantago, etc) and sowed ones (mustards, goosefoots, mayweed and ryegrass) with very distinct characteristics in terms of illumination (shadow, morning, evening, full sun, cloudy, rain, ...) The ground truth is defined for each images with polygons around leafs boundaries: In addition, each polygons are labeled into crop or weed.
DOI: 10.15468/dl.wycy5f
title: Occurrence Download

description: A dataset containing 3294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Brazil, French Guiana)",
 "Geometry POLYGON((-49.93126 0.23435,-39.9305 -2.56294,-34.74876 -5.30253,-33.23059 0.19107,-32.76674 1.82704,-34.00381 2.21049,-49.85655 8.0725,-51.74487 4.62595,-49.93126 0.23435))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3294 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003450-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mv6uj
title: Occurrence Download

description: A dataset containing 49454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cariama cristata (Linnaeus, 1766)"
 ]
}

 The dataset includes 49454 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003448-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12609899
title: Linked collectors and determiners for: Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL.

description: Natural history specimen data linked to collectors and determiners held within, "Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10871866
title: Linked collectors and determiners for: Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL.

description: Natural history specimen data linked to collectors and determiners held within, "Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122096
title: Linked collectors and determiners for: Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL.

description: Natural history specimen data linked to collectors and determiners held within, "Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13385160
title: Linked collectors and determiners for: Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL.

description: Natural history specimen data linked to collectors and determiners held within, "Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13971530
title: Linked collectors and determiners for: Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL.

description: Natural history specimen data linked to collectors and determiners held within, "Zoological Museum Amsterdam, University of Amsterdam (NL) - Diptera_Tipulidae_NL". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed365f0-6167-11de-84c0-b8a03c50a862. Formatted as a Frictionless Data package.
DOI: 10.17632/ybbsszpbss.1
title: Automatic differentiation for solid mechanics, example scripts

description: This is a static collection of the scripts needed to reproduce the examples of the paper: Vigliotti A., Auricchio F., "Automatic differentiation for solid mechanics", Archives of Computational Methods in Engineering, 2020, In the press DOI 10.1007/s11831-019-09396-y The same data are also availble from the following github repository: https://github.com/avigliotti/AD4SM.jl the above repository includes the AD4SM.jl package files and will be updated with new versions, new examples, bug corrections, etc. The scripts included in this data set are written in the Julia programming language and will need a working installation in order to run properly. Julia is an open-source, high-level, high-performance, dynamic programming language. Refer to the Julia language website for more information and downloads at https://julialang.org/ Following the content of the individual files: - adiff.jl : main module implementing the dual number algebra needed for the forward differentiation - materials.jl : module implementing the strain energy density functions for the different material models - elements.jl : module implementing the element integration rules, the functions for evaluating the deformation energy of the entire model, together with the Lagrange multipliers, and the solvers - example_01_non_linear_truss.jl : julia file for the first example 1 of the paper, this file produce as output the openscad model of the deformed truss for producing preety images - example_01_non_linear_truss.ipynb : jupyther notebook file for example 1 - example_02_Euler_beams.ipynb : julia file for the first example 2 of the paper - example_02_Euler_beams.jl : jupyther notebook file for example 2 - example_03_plane_stress.ipynb : jupyther notebook file for the first example 3 of the paper - example_03_plane_stress.jl : julia file for example 3 - example_04_AxSymDomain.ipynb : notebook file for example 4 - example_04_AxSymDomain.jl : julia file for example 4 - example_05_3DSpring.jl : julia file for example 5, this files produces output files readable with paraview - Pattern2D03FinerMesh02j.inp : input file for example 3 - AxSymDomainj.inp : input file for example 4 - 3DSpringHexaj.inp : input file for example 5 - polyhedron_hedges.scad : helper file to produce the openscad files for the deformed lattices of example 1 - description.txt : this file - step_to_reproduce.txt : the file with the steps to reproduce te ecamples
DOI: 10.7910/dvn/pqq4jw
title: Executive Agreements Database, Statement Regarding Agreement Between The United States and Japan Concerning A Program For The Cooperative Research Of Low Vulnerability Gun Propellant For Artillery Effected By Exchange Of Notes Act Tokyo Mar 24, 2000

description: KAV 5706

First signed 
Last signed 
Entry into force (supplemented by last signed)

stamped 00-55

C06537699

cover memo
DOI: 10.34770/rypq-hp25
title: A dual-mechanism antibiotic kills Gram-negative bacteria and avoids drug resistance

description: The rise of antibiotic resistance and declining discovery of new
 antibiotics have created a global health crisis. Of particular concern, no
 new antibiotic classes have been approved for treating Gram-negative
 pathogens in decades. Here, we characterize a compound, SCH-79797, that
 kills both Gram-negative and Gram-positive bacteria through a unique
 dual-targeting mechanism of action (MoA) with undetectably-low resistance
 frequencies. To characterize its MoA, we combined quantitative imaging,
 proteomic, genetic, metabolomic, and cell-based assays. This pipeline
 demonstrates that SCH-79797 has two independent cellular targets, folate
 metabolism and bacterial membrane integrity, and outperforms combination
 treatments in killing MRSA persisters. Building on the molecular core of
 SCH-79797, we developed a derivative, Irresistin-16, with increased
 potency and showed its efficacy against Neisseria gonorrheae in a mouse
 vaginal infection model. This promising antibiotic lead suggests that
 combining multiple MoAs onto a single chemical scaffold may be an
 underappreciated approach to targeting challenging bacterial pathogens.
DOI: 10.5281/zenodo.10583210
title: Linked collectors and determiners for: Revision and new species of the African genus Mischogyne (Annonaceae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision and new species of the African genus Mischogyne (Annonaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed5ac34-1b70-4189-a175-7526621e1705 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed5ac34-1b70-4189-a175-7526621e1705. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10871871
title: Linked collectors and determiners for: Revision and new species of the African genus Mischogyne (Annonaceae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision and new species of the African genus Mischogyne (Annonaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed5ac34-1b70-4189-a175-7526621e1705 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed5ac34-1b70-4189-a175-7526621e1705. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122098
title: Linked collectors and determiners for: Revision and new species of the African genus Mischogyne (Annonaceae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision and new species of the African genus Mischogyne (Annonaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed5ac34-1b70-4189-a175-7526621e1705 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed5ac34-1b70-4189-a175-7526621e1705. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10703878
title: Linked collectors and determiners for: Revision and new species of the African genus Mischogyne (Annonaceae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision and new species of the African genus Mischogyne (Annonaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed5ac34-1b70-4189-a175-7526621e1705 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed5ac34-1b70-4189-a175-7526621e1705. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11048551
title: Linked collectors and determiners for: Revision and new species of the African genus Mischogyne (Annonaceae).

description: Natural history specimen data linked to collectors and determiners held within, "Revision and new species of the African genus Mischogyne (Annonaceae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1ed5ac34-1b70-4189-a175-7526621e1705 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1ed5ac34-1b70-4189-a175-7526621e1705. Formatted as a Frictionless Data package.