cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5140025
title: Downsampling of CT-Lymph-Node Dataset for Body Part Regression Tutorial

description: Down sampling of the CT Lymph Node dataset from the TCIA.<br> The files were down sampled to a pixel spacing of 7 mm/pixel. Through zero padding and cropping, all images are provided in the size of 64px x 64 px. Moreover, the HU values were clipped between -1000 HU and 1500 HU and rescaled to -1 and 1. To avoid aliasing effects, an additional Gaussian smoothing filter was applied before down sampling. This dataset was created for a Body Part Regression tutorial.
description: {"references": ["Roth, H., Lu, L., Seff, A., Cherry, K. M., Hoffman, J., Wang, S., Liu, J., Turkbey, E., & Summers, R. M. (2015). A new 2.5 D representation for lymph node detection in CT [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2015.AQIIDCNM", "Roth, H. R., Lu, L., Seff, A., Cherry, K. M., Hoffman, J., Wang, S., Liu, J., Turkbey, E., & Summers, R. M. (2014). A New 2.5D Representation for Lymph Node Detection Using Random Sets of Deep Convolutional Neural Network Observations. In Medical Image Computing and Computer-Assisted Intervention \u2013 MICCAI 2014 (pp. 520\u2013527). Springer International Publishing. https://doi.org/10.1007/978-3-319-10404-1_65", "Seff, A., Lu, L., Cherry, K.M., Roth, H.R., Liu, J., Wang, S., Hoffman, J., Turkbey, E.B., & Summers, R.M. 2D view aggregation for lymph node detection using a shallow hierarchy of linear classifiers. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2014, p544-552, 2014. (http://arxiv.org/abs/1408.3337)", "Please cite the following paper when using the segmentation masks: Seff, A., Lu, L., Barbu, A., Roth, H., Shin, H.-C., & Summers, R. M. (2015). Leveraging Mid-Level Semantic Boundary Cues for Automated Lymph Node Detection. In Lecture Notes in Computer Science Medical Image Computing and Computer-Assisted Intervention\u2013MICCAI 2015 (pp. 53\u201361). Springer International Publishing. https://doi.org/10.1007/978-3-319-24571-3_7", "Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. Journal of Digital Imaging, 26(6), 1045\u20131057. https://doi.org/10.1007/s10278-013-9622-7"]}
DOI: 10.5281/zenodo.4814191
title: Replication files for: Strongmen Cry Too: The Effect of Aerial Bombing on Voting for The Incumbent in Competitive Autocracies

description: The NATO bombing of Yugoslavia, which lasted from March 24, 1999 until June 10, 1999, was the largest air campaign in Europe since the bombing of Britain and Germany in World War II. The air raids lasted for 78 days and hit 108 out of 160 municipalities, excluding Kosovo and Montenegro. The bombing was spread out and largely aimed at military barracks, industrial facilities, transportation networks, and communication lines. This repo provides a novel dataset with information on over 1,000 targets in the Federal Republic of Yugoslavia, including the date, location, target type, and fatalities. Included is also R code for the replication of my article "Strongmen Cry Too: The Effect of Aerial Bombing on Voting for The Incumbent in Competitive Autocracies" that was accepted for publication at Journal of Peace Research.
DOI: 10.5281/zenodo.5211136
title: Example workflow using KLIFS nodes in KNIME - identifying structures with similar molecules

description: This is KNIME workflow created during the recording of the following YouTube demonstration video. Using this workflow, the user can draw a molecule and compare this molecule to all ligands from the KLIFS database (https://klifs.net) to identify structures with molecules that are similar to the drawn molecule. In this workflow the follow steps are performed: Draw a molecule Collect all kinase ligands with a known structures from KLIFS Compare all KLIFS ligands to the drawn molecule using the ECFP-4 fingerprint and calculate a Tanimoto score Select the highest scoring three ligands and search for their PDB structures Collect the MOL2 files of the ligands as observed while binding in the PDB structures (note: all the PDB structures were first aligned by KLIFS)
DOI: 10.5281/zenodo.5211135
title: Example workflow using KLIFS nodes in KNIME - identifying structures with similar molecules

description: This is KNIME workflow created during the recording of the following YouTube demonstration video. Using this workflow, the user can draw a molecule and compare this molecule to all ligands from the KLIFS database (https://klifs.net) to identify structures with molecules that are similar to the drawn molecule. In this workflow the follow steps are performed: Draw a molecule Collect all kinase ligands with a known structures from KLIFS Compare all KLIFS ligands to the drawn molecule using the ECFP-4 fingerprint and calculate a Tanimoto score Select the highest scoring three ligands and search for their PDB structures Collect the MOL2 files of the ligands as observed while binding in the PDB structures (note: all the PDB structures were first aligned by KLIFS)
DOI: 10.5517/ccdc.csd.cc260wjn
title: CCDC 2026641: Experimental Crystal Structure Determination

description: Related Article: Marianne H. Paulsen, Magnus Engqvist, Dominik Ausbacher, Trude Anderssen, Manuel K. Langer, Tor Haug, Glenn R. Morello, Laura E. Liikanen, Hans-Matti Blencke, Johan Isaksson, Eric Juskewitz, Annette Bayer, Morten B. Strøm|2021|J.Med.Chem.|64|11395|doi:10.1021/acs.jmedchem.1c00734
DOI: 10.5517/ccdc.csd.cc275d4z
title: CCDC 2060760: Experimental Crystal Structure Determination

description: Related Article: Helge-Boj Hansen, Hubert Wadepohl, Markus Enders|2021|Chem.-Eur.J.|27|11084|doi:10.1002/chem.202101586
DOI: 10.5517/ccdc.csd.cc275d50
title: CCDC 2060761: Experimental Crystal Structure Determination

description: Related Article: Helge-Boj Hansen, Hubert Wadepohl, Markus Enders|2021|Chem.-Eur.J.|27|11084|doi:10.1002/chem.202101586
DOI: 10.5517/ccdc.csd.cc275d61
title: CCDC 2060762: Experimental Crystal Structure Determination

description: Related Article: Helge-Boj Hansen, Hubert Wadepohl, Markus Enders|2021|Chem.-Eur.J.|27|11084|doi:10.1002/chem.202101586
DOI: 10.5517/ccdc.csd.cc275d72
title: CCDC 2060763: Experimental Crystal Structure Determination

description: Related Article: Helge-Boj Hansen, Hubert Wadepohl, Markus Enders|2021|Chem.-Eur.J.|27|11084|doi:10.1002/chem.202101586
DOI: 10.5281/zenodo.5153346
title: Excess soil moisture and fresh carbon input are prerequisites for methane production in podzolic soil

description: This package contains the data used in the research article: "Excess soil moisture and fresh carbon input are prerequisites for methane production in podzolic soil" published in Biogeosciences. flux_data.csv contains the measured CH4 fluxes and corresponding ambient air temperature, 5 cm soil moisture and 5 cm soil temperature during the flux measurement. CH4_potentials.xlsx contains the measured CH4 oxidation and production potential data data_soil_moisture.csv contains the time series of measured 5 cm soil moisture at the flux points. data_soil_temperature.csv contains the time series of measured 5 cm soil temperature at the flux points. microcosm_data.csv contains the data of the microcosm experiment. Columns are: datetime, sample name, sample temperature (15 or 25 c), sample moisture (control, M1 (moderate moisture), M2 (high moisture)), glucose addition (no glucose or with glucose), week (measurement week), ch4 flux.
DOI: 10.21942/uva.14176493
title: Data for ''Why it is important to consider negative ties when studying polarized debates on Twitter: a signed network analysis of a Dutch cultural controversy on Twitter"

description: This database provides the data used for a study into the debate on Black Pete ("Zwarte Pete") in the Netherlands from 4th of December 2017 until 7th of May 2019. Due to the sensitive character of this data (relating to political beliefs), we only share tweet-ids and the mention sentiment (positive, negative, ambiguous) expresses towards the mentioned user in each tweet. We derived this sentiment with a fastText machine learning model, which we will not share in line with ethical guidelines. The article with details on the classification will be published in PlosOne.
DOI: 10.5281/zenodo.4737864
title: Biotin Electron Diffraction (MicroED) Datasets - Glacios TEM with a CETA-D

description: Electron diffraction datasets collected from nanometer sized crystals of biotin (TCI, MDL Number: MFCD00005541) applied to an electron microscopy grid covered in a pure carbon film. Data were collected using a Thermo Fisher Scientific Glacios Transmission Electron Microscope operated at 200 kV and -193 C using the software package Leginon (Cheng, et. al. 2021). The beam diameter is ~600 nm and the total dose is ~3.4e-/A^2. The crystals were continuously rotated and diffraction data was collected with a CETA-D camera in rolling shutter mode. Data have been converted to SMV format with the addition of an offset value to remove negative pixel values. This offset value can be found in the image headers, along with a suggested pedestal value. An image of the crystal before centering on the small green dot is also included. Data from four crystals are provided along with data reduction results. If processing in DIALS, you will first want to install the proper format class: dxtbx.install_format -u https://raw.githubusercontent.com/dials/dxtbx_ED_formats/master/FormatSMVCetaD_TUI.py A data processing tutorial is available for these datasets using DIALS: https://dials.github.io/documentation/tutorials/3DED/Biotin.html
description: {"references": ["Bruhn, J.F. et al. (2021). mall Molecule Microcrystal Electron Diffraction (MicroED) for the Pharmaceutical Industry \u2013 Lessons Learned from Examining Over Fifty Samples. Front. Mol. Biosci. | doi: 10.3389/fmolb.2021.648603"]}
DOI: 10.5281/zenodo.4737863
title: Biotin Electron Diffraction (MicroED) Datasets - Glacios TEM with a CETA-D

description: Electron diffraction datasets collected from nanometer sized crystals of biotin (TCI, MDL Number: MFCD00005541) applied to an electron microscopy grid covered in a pure carbon film. Data were collected using a Thermo Fisher Scientific Glacios Transmission Electron Microscope operated at 200 kV and -193 C using the software package Leginon (Cheng, et. al. 2021). The beam diameter is ~600 nm and the total dose is ~3.4e-/A^2. The crystals were continuously rotated and diffraction data was collected with a CETA-D camera in rolling shutter mode. Data have been converted to SMV format with the addition of an offset value to remove negative pixel values. This offset value can be found in the image headers, along with a suggested pedestal value. An image of the crystal before centering on the small green dot is also included. Data from four crystals are provided along with data reduction results. If processing in DIALS, you will first want to install the proper format class: dxtbx.install_format -u https://raw.githubusercontent.com/dials/dxtbx_ED_formats/master/FormatSMVCetaD_TUI.py A data processing tutorial is available for these datasets using DIALS: https://dials.github.io/documentation/tutorials/3DED/Biotin.html
description: {"references": ["Bruhn, J.F. et al. (2021). mall Molecule Microcrystal Electron Diffraction (MicroED) for the Pharmaceutical Industry \u2013 Lessons Learned from Examining Over Fifty Samples. Front. Mol. Biosci. | doi: 10.3389/fmolb.2021.648603"]}
DOI: 10.7910/dvn/si6vx8
title: Influence of titanium foliar application on antioxidant enzyme activity and some biochemical attributes of cornHarvard Dataverse

description: Influence of titanium foliar application on antioxidant enzyme activity and some biochemical attributes of cornHarvard Dataverse
DOI: 10.5281/zenodo.5163985
title: Dataset_Bencze, Sz. et al Sustainability yield 2016-2018

description: Yield and grain quality raw data of different emmer and einkorn cultivars relate dto the results published in Bencze, Szilvia, Makádi, Marianna, Aranyos, Tibor J., Földi, Mihály, Hertelendy, Péter, Mikó, Péter, Bosi, Sara, Negri, Lorenzo, & Drexler, Dóra. (2020). Re-Introduction of Ancient Wheat Cultivars into Organic Agriculture—Emmer and Einkorn Cultivation Experiences under Marginal Conditions. Sustainability, 12(4).
DOI: 10.5281/zenodo.5163984
title: Dataset_Bencze, Sz. et al Sustainability yield 2016-2018

description: Yield and grain quality raw data of different emmer and einkorn cultivars relate dto the results published in Bencze, Szilvia, Makádi, Marianna, Aranyos, Tibor J., Földi, Mihály, Hertelendy, Péter, Mikó, Péter, Bosi, Sara, Negri, Lorenzo, & Drexler, Dóra. (2020). Re-Introduction of Ancient Wheat Cultivars into Organic Agriculture—Emmer and Einkorn Cultivation Experiences under Marginal Conditions. Sustainability, 12(4).
DOI: 10.7910/dvn/zj1ooe
title: Response of wheat genotypes to osmotic stress in terms of seed germination and growth of seedling

description: Response of wheat genotypes to osmotic stress in terms of seed germination and growth of seedling
DOI: 10.7910/dvn/ijyswv
title: The effect of irrigation and nitrogen top-dressing pattern on yield and growth of sunflower

description: The effect of irrigation and nitrogen top-dressing pattern on yield and growth of sunflower
DOI: 10.6084/m9.figshare.15173088
title: The Hsc70 Disaggregation Machinery Removes Monomer Units Directly from α-Synuclein Fibril Ends

description: Source data for the figures.
DOI: 10.7910/dvn/kxgevj
title: Use of water use efficiency and water stress tolerance indices for the comparing of bread wheat (Triticum aestivum) genotypes

description: Use of water use efficiency and water stress tolerance indices for the comparing of bread wheat (Triticum aestivum) genotypes
DOI: 10.7910/dvn/juizxn
title: Effect of PRD irrigation method and potassium fertilizer application on corn yield and water use efficiency

description: Effect of PRD irrigation method and potassium fertilizer application on corn yield and water use efficiency
DOI: 10.7910/dvn/5utewo
title: Interactive effects of sowing date and planting density on dry matter accumulation and partitioning of chicory

description: Interactive effects of sowing date and planting density on dry matter accumulation and partitioning of chicory
DOI: 10.5281/zenodo.610495
title: Chiroptical properties of streptorubin B – the synergy between theory and experiment.

description: Computational analysis of the calculated and measured optical rotation (OR) together with other calculated chiroptical properties such as electronic circular dichroism (ECD) and vibrational circular dichroism (VCD) of the prodigiosin alkaloid streptorubin B
DOI: 10.7910/dvn/ovf9yw
title: Allelopathy of weed extracts on yield and its components in four cultivars of rice (Oryza sativa L.)

description: Allelopathy of weed extracts on yield and its components in four cultivars of rice (Oryza sativa L.)
DOI: 10.5281/zenodo.5211255
title: Water consumption of the Huaihe River Basin and Shandong Peninsula

description: Water consumption of the Huaihe River Basin and Shandong Peninsula
DOI: 10.6084/m9.figshare.1206359
title: Simultaneous numerical determination of a corroded boundary and its admittance

description: In this paper, an inverse geometric problem for Laplace’s equation arising in boundary corrosion detection is considered. This problem, which consists of determining an unknown corroded portion of the boundary of a bounded domain and its admittance Robin coefficient from two pairs of boundary Cauchy data (boundary temperature and heat flux), is solved numerically using the meshless method of fundamental solutions. A non-linear minimization of the objective function is regularized, and the stability of the numerical results is investigated with respect to noise in the input data and various values of the regularization parameters involved.
DOI: 10.6084/m9.figshare.1206359.v2
title: Simultaneous numerical determination of a corroded boundary and its admittance

description: In this paper, an inverse geometric problem for Laplace’s equation arising in boundary corrosion detection is considered. This problem, which consists of determining an unknown corroded portion of the boundary of a bounded domain and its admittance Robin coefficient from two pairs of boundary Cauchy data (boundary temperature and heat flux), is solved numerically using the meshless method of fundamental solutions. A non-linear minimization of the objective function is regularized, and the stability of the numerical results is investigated with respect to noise in the input data and various values of the regularization parameters involved.
DOI: 10.6084/m9.figshare.1206359.v1
title: Simultaneous numerical determination of a corroded boundary and its admittance

description: In this paper, an inverse geometric problem for Laplace’s equation arising in boundary corrosion detection is considered. This problem, which consists of determining an unknown corroded portion of the boundary of a bounded domain and its admittance Robin coefficient from two pairs of boundary Cauchy data (boundary temperature and heat flux), is solved numerically using the meshless method of fundamental solutions. A non-linear minimization of the objective function is regularized, and the stability of the numerical results is investigated with respect to noise in the input data and various values of the regularization parameters involved.
DOI: 10.7910/dvn/yygqir
title: Impact of sowing density and harvesting management on pattern of hard seed breakdown in alfalfa [Medicago scutellata

description: Impact of sowing density and harvesting management on pattern of hard seed breakdown in alfalfa [Medicago scutellata
DOI: 10.6084/m9.figshare.15177849
title: Supplementary Material for: The Saudi Experience of Health-Related Social Media Use: A Scoping Review

description: <b><i>Objectives:</i></b> Social media (SM) are evolving and dynamic applications which can be used in health-care settings to enhance professional networking and education; patient communication, care, and education; public health programs; organizational promotion; and research. This review aims to analyze, summarize, and describe the current Saudi experience of SM use for health. <b><i>Methods:</i></b> A MEDLINE/PubMed electronic database search was performed in July 2020 utilizing the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) recommendations. The initial search has yielded a total of 263 articles, of which 25 met our inclusion criteria. <b><i>Results:</i></b> In Saudi Arabia, the literature reports a high interest in using SM for health-related purposes among the public, with a prevalence of &gt;51%. The Saudi population has been found to highly favor the use of WhatsApp and Twitter for gaining and exchanging knowledge. Multiple facilitators and barriers have been identified and further categorized based on the users’ population, such as general public, health-care practitioners, and patients with specific conditions. Overall, the common facilitator and barrier between all users’ population categories were found to be younger age and lack of time, respectively. <b><i>Conclusion:</i></b> SM use for health-care activities is increasing in Saudi Arabia. Thus, it is important for SM-based health education programs to target specific population and patients’ demographics with programs tailored to their particular interests and needs. This is particularly evident in the current achievements and future plans of the Saudi Ministry of Health.
DOI: 10.6084/m9.figshare.15177849.v1
title: Supplementary Material for: The Saudi Experience of Health-Related Social Media Use: A Scoping Review

description: <b><i>Objectives:</i></b> Social media (SM) are evolving and dynamic applications which can be used in health-care settings to enhance professional networking and education; patient communication, care, and education; public health programs; organizational promotion; and research. This review aims to analyze, summarize, and describe the current Saudi experience of SM use for health. <b><i>Methods:</i></b> A MEDLINE/PubMed electronic database search was performed in July 2020 utilizing the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) recommendations. The initial search has yielded a total of 263 articles, of which 25 met our inclusion criteria. <b><i>Results:</i></b> In Saudi Arabia, the literature reports a high interest in using SM for health-related purposes among the public, with a prevalence of &gt;51%. The Saudi population has been found to highly favor the use of WhatsApp and Twitter for gaining and exchanging knowledge. Multiple facilitators and barriers have been identified and further categorized based on the users’ population, such as general public, health-care practitioners, and patients with specific conditions. Overall, the common facilitator and barrier between all users’ population categories were found to be younger age and lack of time, respectively. <b><i>Conclusion:</i></b> SM use for health-care activities is increasing in Saudi Arabia. Thus, it is important for SM-based health education programs to target specific population and patients’ demographics with programs tailored to their particular interests and needs. This is particularly evident in the current achievements and future plans of the Saudi Ministry of Health.
DOI: 10.7910/dvn/ohbgyo
title: Modeling light interception and distribution in mixed canopy of redroot pigweed (Amaranthus retroflexus) in competition with corn (Zea mays)

description: Modeling light interception and distribution in mixed canopy of redroot pigweed (Amaranthus retroflexus) in competition with corn (Zea mays)
DOI: 10.7910/dvn/4fdqiw
title: The impact of source restriction on yield formation of corn (Zea mays L.) due to water deficiency

description: The impact of source restriction on yield formation of corn (Zea mays L.) due to water deficiency
DOI: 10.7910/dvn/ligkwq
title: Wheat (Triticum aestivum L.) grain filling and dry matter partitioning responses to source:sink modifications under postanthesis water and nitrogen deficiency

description: Wheat (Triticum aestivum L.) grain filling and dry matter partitioning responses to source:sink modifications under postanthesis water and nitrogen deficiency
DOI: 10.7910/dvn/xubhdc
title: Nitrogen Availability Affects the Yield of Winter Wheat Subjected to Water Stress during Grain Filling

description: Nitrogen Availability Affects the Yield of Winter Wheat Subjected to Water Stress during Grain Filling
DOI: 10.5519/qd.66ntry9h
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (160 records)
DOI: 10.5281/zenodo.5211271
title: potassium (2-pyrimidin-2-yl-1H-benzimidazole)dimethylnickel, K(bimpm)Ni(CH3)2

description: Data Set for compound 1
DOI: 10.5281/zenodo.5211270
title: potassium (2-pyrimidin-2-yl-1H-benzimidazole)dimethylnickel, K(bimpm)Ni(CH3)2

description: Data Set for compound 1
DOI: 10.3886/e125141v1-94080
title: Data and Code for: What to Expect from the Lower Bound on Interest Rates: Evidence from Derivatives Prices

description: These files contain the data and programs for the paper "What to Expect from the Lower Bound on Interest Rates: Evidence from Derivatives Prices," American Economic Review. This paper analyzes the effects of the lower bound for interest rates on the distributions of inflation and interest rates. In a New Keynesian model with a lower bound, two equilibria emerge: Policy is mostly unconstrained in the “target equilibrium,” whereas policy is mostly constrained in the “liquidity trap equilibrium.” Using options data on interest rates and inflation, we find forecast densities consistent with the target equilibrium and find no evidence in favor of the liquidity trap equilibrium. The lower bound has a sizable effect on the distribution of interest rates, but its impact on inflation is relatively modest.
DOI: 10.5519/qd.56ekuy7w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (42 records)