cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dq9fa2
title: Occurrence Download

description: A dataset containing 64582 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is 2013",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 64582 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005355-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-o97bqg
title: Small-angle neutron scattering, electron microscopy, and molecular simulation data package of nanoporosity in lithospheric rocks and its impact on water permittivity and mineral solubility

description: We show nanoporosity in a diverse range of lithospheric rocks and determine the impact of nanoconfinement on water permittivity and mineral solubility within the Earth’s lithosphere. This data package includes small-angle neutron scattering (SANS) data and transmission electron microscopy (TEM) images showing nanoporosity in various lithospheric rock samples. Subsequently, molecular dynamics input files are provided to simulate the behavior of water confined in these nanopores. Our results indicate significant deviations in both perpendicular and parallel components of nanoconfined water permittivity compared to the bulk. Consequently, this alteration in permittivity leads to a decrease in mineral solubility under elevated pressure-temperature conditions. The data is organized into 7 folders labeled Figure X, where X is the figure number in the primary publication, Extended Data Figure Y, where Y denotes the extended data figure number in the primary publication, and a Simulations folder containing the molecular dynamics (MD) input files. All MD simulations were conducted using the LAMMPS package.

The data is provided in 7 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file readme.txt.
DOI: 10.5517/ccdc.csd.cc2fj5v0
title: CCDC 2249882: Experimental Crystal Structure Determination

description: Related Article: Alexander C. Brannan, Hwan‐Hee Cho, Antti‐Pekka M. Reponen, Mikko Linnolahti, Manfred Bochmann, Neil C. Greenham, Alexander S. Romanov|2024|Adv.Mater.|36|2306249|doi:10.1002/adma.202306249
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.24416/uu01-8pc81e
title: Small-angle neutron scattering, electron microscopy, and molecular simulation data package of nanoporosity in lithospheric rocks and its impact on water permittivity and mineral solubility

description: We show nanoporosity in a diverse range of lithospheric rocks and determine the impact of nanoconfinement on water permittivity and mineral solubility within the Earth’s lithosphere. This data package includes small-angle neutron scattering (SANS) data and transmission electron microscopy (TEM) images showing nanoporosity in various lithospheric rock samples. Subsequently, molecular dynamics input files are provided to simulate the behavior of water confined in these nanopores. Our results indicate significant deviations in both perpendicular and parallel components of nanoconfined water permittivity compared to the bulk. Consequently, this alteration in permittivity leads to a decrease in mineral solubility under elevated pressure-temperature conditions. The data is organized into 8 folders labeled Figure X, where X is the figure number in the primary publication, Extended Data Figure Y, where Y denotes the extended data figure number in the primary publication, and a Simulations folder containing the molecular dynamics (MD) input files. All MD simulations were conducted using the LAMMPS package.
DOI: 10.5517/ccdc.csd.cc2fj5w1
title: CCDC 2249883: Experimental Crystal Structure Determination

description: Related Article: Alexander C. Brannan, Hwan‐Hee Cho, Antti‐Pekka M. Reponen, Mikko Linnolahti, Manfred Bochmann, Neil C. Greenham, Alexander S. Romanov|2024|Adv.Mater.|36|2306249|doi:10.1002/adma.202306249
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fp1z5
title: CCDC 2254567: Experimental Crystal Structure Determination

description: Related Article: P. A. Stabnikov, M. A. Bespyatov, I. V. Korolkov, A. S. Sukhikh, P. E. Plyusnin, S. V. Trubin, A. V. Sartakova, S. V. Sysoe
|2024|Zh.Neorg.Khim.|69|1010|doi:10.1134/S0036023624601181
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fp207
title: CCDC 2254568: Experimental Crystal Structure Determination

description: Related Article: P. A. Stabnikov, M. A. Bespyatov, I. V. Korolkov, A. S. Sukhikh, P. E. Plyusnin, S. V. Trubin, A. V. Sartakova, S. V. Sysoe
|2024|Zh.Neorg.Khim.|69|1010|doi:10.1134/S0036023624601181
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.24416/uu01-67jmgp
title: Small-angle neutron scattering, electron microscopy, and molecular simulation data package of nanoporosity in lithospheric rocks and its impact on water permittivity and mineral solubility

description: We show nanoporosity in a diverse range of lithospheric rocks and determine the impact of nanoconfinement on water permittivity and mineral solubility within the Earth’s lithosphere. This data package includes small-angle neutron scattering (SANS) data and transmission electron microscopy (TEM) images showing nanoporosity in various lithospheric rock samples. Subsequently, molecular dynamics input files are provided to simulate the behavior of water confined in these nanopores. Our results indicate significant deviations in both perpendicular and parallel components of nanoconfined water permittivity compared to the bulk. Consequently, this alteration in permittivity leads to a decrease in mineral solubility under elevated pressure-temperature conditions. The data is organized into 8 folders labeled Figure X, where X is the figure number in the primary publication, Extended Data Figure Y, where Y denotes the extended data figure number in the primary publication, and a Simulations folder containing the molecular dynamics (MD) input files. All MD simulations were conducted using the LAMMPS package.
DOI: 10.24416/uu01-94p4hl
title: Activation of dissolution-precipitation creep causes weakening and viscous behaviour in experimentally-deformed antigorite

description: Antigorite occurs at seismogenic depth along plate boundary shear zones, particularly in subduction and oceanic transform settings, and has been suggested to control a low strength bulk rheology. To constrain dominant deformation mechanisms, we perform hydrothermal ring-shear experiments on antigorite and antigorite-quartz mixtures at temperatures between 20 and 500 ◦C and 150 MPa effective normal stress. Pure antigorite 20 is strain hardening, with frictional coefficient (μ) > 0.5, and developed cataclastic microstructures. In contrast, antigorite-quartz mixtures (10 % quartz) are strain weakening with μ decreasing with temperature from 0.36 at 200◦C to 0.22 at 500◦C. Antigorite-quartz mixtures developed foliation similar to natural serpentinite shear zones. Although reaction between antigorite and quartz is expected to form mechanically weak talc, we only find small, localised amounts of talc in our deformed samples, and mechanical data are inconsistent with reaction-dependent weakening. Instead, we propose that the observed weakening primarily results from silica dissolution leading to a lowered pore-fluid pH that increases antigorite solubility and dissolution rate and thus the rate of dissolution-precipitation creep. We suggest that under our experimental conditions, efficient dissolution-precipitation creep coupled to grain boundary sliding results in a mechanically weak frictional-viscous rheology. Antigorite with this rheology is much weaker than antigorite deforming frictionally, and strength is sensitive to effective normal stress and strain rate. The activation of dissolution-precipitation in antigorite may allow steady or transient creep at low driving stress where antigorite solubility and dissolution rate are high relative to strain rate, for example in faults juxtaposing serpentinite with quartz-bearing rocks.

Data is from hydrothermal ring shear experiments on simulated gouges of antigorite and antigorite-quartz. The data is provided in 12 subfolders for 10 experiments/samples. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file Data-Documentation_Antigorite.pdf.
DOI: 10.24416/uu01-qnasxb
title: Replication Data for: Modeling the Distribution of Iron-oxides in Basalt by combining FIB-SEM and MicroCT Measurements [updated]

description: This Dataset contains all data (and more!) required to replicate the results presented in the manuscript.
All data processing is carried out in jupyter notebooks (DataProcessing_*.ipynb). Required python packages are listed at the end of this file.
We employed FIBSEM data (focused ion beam scanning electron microscopy), MicroCT (micro X-Ray computed tomography) data, and SEM (scanning electron microscopy) data for our manuscript.

A new version of this dataset has been published and is available via; https://public.yoda.uu.nl/geo/UU01/ULMT87.html

The data is provided in 4 subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file Readme.txt. Contact person is Frenk Out - Researcher - f.out@uu.nl
DOI: 10.24416/uu01-2t6yau
title: Data supplement to "The dynamics of CO2-driven granular flows in gullies on Mars" [UPDATED]

description: The data presented in this package stems from two sets of experiments with CO2-driven granular flows under Martian atmospheric conditions. These experiments were conducted two Mars chambers (Mars Chamber at the Open University, Milton Keynes, UK and the Aarhus Mars Simulation Wind Tunnel at Aarhus University, Aarhus, Denmark). The experiments simulate the CO2-driven granular flow under Martian atmospheric conditions on two different scales.

The data includes digital elevation models of the outflows of these CO2-driven flows and it includes raw sensor data from numerous sensors in and around the flume.

The data presented and described here is a supplement to the following submitted manuscript:
Roelofs, L., Conway, S.J., van Dam, B., van Eijk, A., Merrison, J.P., Iversen, J.J., Sylvest, M., Patel, M.R., van Maarseveen, M., 
McElwaine, J., Kleinhans, M.G., de Haas, T. (2024). The dynamics of CO2-driven granular flows in gullies on Mars. 

The data is provided in two subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file ReadMe_Yoda_DYNAMICSOFCO2DRIVENGRANULARFLOWS.txt. Contact person is: Lonneke Roelofs - l.roelofs@uu.nl

There is a new version of this data set released, which can be found here; https://public.yoda.uu.nl/geo/UU01/WXXMZF.html
DOI: 10.24416/uu01-wxxmzf
title: Data supplement to "The dynamics of CO2-driven granular flows in gullies on Mars"

description: The data presented in this package stems from two sets of experiments with CO2-driven granular flows under Martian atmospheric conditions. These experiments were conducted two Mars chambers (Mars Chamber at the Open University, Milton Keynes, UK and the Aarhus Mars Simulation Wind Tunnel at Aarhus University, Aarhus, Denmark). The experiments simulate the CO2-driven granular flow under Martian atmospheric conditions on two different scales.

The data includes digital elevation models of the outflows of these CO2-driven flows and it includes raw sensor data from numerous sensors in and around the flume.

The data presented and described here is a supplement to the following submitted manuscript:
Roelofs, L., Conway, S.J., van Dam, B., van Eijk, A., Merrison, J.P., Iversen, J.J., Sylvest, M., Patel, M.R., van Maarseveen, M., 
McElwaine, J., Kleinhans, M.G., de Haas, T. (2024). The dynamics of CO2-driven granular flows in gullies on Mars. 

The data is provided in two subfolders. Detailed information about the files in these subfolders as well as information on how the data is processed is given in the explanatory file ReadMe_Yoda_DYNAMICSOFCO2DRIVENGRANULARFLOWS.txt. Contact person is: Lonneke Roelofs - l.roelofs@uu.nl
DOI: 10.24416/uu01-0qhx53
title: Dissolved_Oxygen_Hybrid_Simulations

description: This dataset contains daily simulations of dissolved oxygen concentration from DynQual_Random Forest over the period 1980-2019 and for five Global Climate Models (GCMs) over the period 2020-2100.
DOI: 10.25824/redu/8p0l1t
title: Replication data for: Fotomicrografias de esfregaços fecais contendo parasitos intestinais humanos, destinadas ao diagnóstico parasitológico por análise automatizada de imagens

description: Conjunto de dados proveniente de estudo de adequação de protocolo de coloração de parasitos intestinais com a finalidade de otimizar o diagnóstico parasitológico por análise computadorizada de imagens. O banco de dados contém 1.541 imagens obtidas por meio de fotomicrografias de esfregaços fecais contendo cistos, ovos e larvas de quatorze espécies de parasitos intestinais. As imagens de 2.040 x 2.046 pixels foram salvas em formato Portable Network Graphic (PNG), sem compressão. 1. Ancilostomídeos; 2. Entamoeba coli ; 3. Entamoeba histolytica/dispar ; 4. Giardia duodenalis ; 5. Endolimax nana ; 6. Blastocystis hominis ; 7. Iodamoeba butschlii ; 8. Schistosoma mansoni ; 9. Strongyloides stercoralis ; 10. Taenia spp.; 11. Enterobius vermicularis ; 12. Hymenolepis nana ; 13. Hymenolepis diminuta ; 14. Trichuris trichiura . Os dados não podem ser disponibilizados por motivos de proteção intelectual. Para mais informações, contate diretamente os responsáveis pela pesquisa.
DOI: 10.15468/dl.jf9jsu
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sapria himalayana"
 ]
}

 The dataset includes 175 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005403-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-bp8esb
title: Data for paper "Alpine plant trait combinations shape soil erosion dynamics and patterns"

description: This is the data for the paper "Alpine plant trait combinations shape soil erosion dynamics and patterns" by Eichel et al., submitted to Catena.

The dataset contains:
* Experimental data measured in 2023 and 2024 (Excel sheet)
* Trait data measured for all planted species pre-experiment
* Biomass data for all species measured pre- and post-experiment
* GIS data of experiment from 2023 (initial DSM, final DSM, orthophoto 26.09.23)
* GIS data of experiment from 2024 (per set of boxes: initial DSM, final DSM, orthophoto 02.10.24)
DOI: 10.24416/uu01-k452qn
title: A computationally efficient method to model Stratospheric Aerosol Injection experiments (addendum)

description: This dataset, together with "A computationally efficient method to model Stratospheric Aerosol Injection experiments", contains the necessary code and data for reproducing the results of the accompanying paper. In this work, we implement a method for prescribing stratospheric aerosol fields in geoengineering simulations with CESM2-CAM and CESM1-CAM based on pre-existing WACCM geoengineering simulations. Specifically, this dataset contains the general CESM input data, the pre-existing WACCM data for CESM2 and a README.
DOI: 10.24416/uu01-f7sgno
title: A computationally efficient method to model Stratospheric Aerosol Injection experiments (addendum)

description: This dataset, together with "A computationally efficient method to model Stratospheric Aerosol Injection experiments", contains the necessary code and data for reproducing the results of the accompanying paper. In this work, we implement a method for prescribing stratospheric aerosol fields in geoengineering simulations with CESM2-CAM and CESM1-CAM based on pre-existing WACCM geoengineering simulations. Specifically, this dataset contains the general CESM input data, the pre-existing WACCM data for CESM2 and a README.
DOI: 10.24416/uu01-1zvq8m
title: Chapter 2: Digital Data Supplements subsurface dataset Rhine-Meuse delta in the Netherlands

description: Quantitative local determination of these characteristics poses a major challenge in natural environments with a heterogeneous substrate. Geological knowledge on the natural genesis and resulting structure of the subsurface may provide useful information on the spatial variability of substrate characteristics. Here we describe a framework for using geological subsurface information for these assessments. Based on existing digital geological mapping products and knowledge of the geological development of the Rhine-Meuse delta. We then used these spatial divisions in an analysis of digital borehole data (>130.000 locations, UU-LLG dataset), to provide quantitative information on grain sizes of the very top of sand bodies and non-sand overburden thicknesses, split per subunit and summarized for sub regions (lower delta, central delta, upper delta, delta rim sectors). This framework enables us to demonstrate to what extent the median grain size of the top of sand deposits varies within the delta.

The data is provided in 3 spreadsheets in csv format. Detailed information about these files as well as information on how the data is processed is given in the explanatory file README_Chapter_2.txt. Contact person is Tim Winkels - timwinkels87@hotmail.com
DOI: 10.24416/uu01-i8hw5i
title: Chapter 3: Digital Data Supplements subsurface dataset Rhine-Meuse delta in the Netherlands

description: Based on knowledge of the geological development of the Rhine-Meuse delta, we hypothesizes how changing boundary conditions (i.e. changes in upstream sediment supply, confinement of floodwaters, channel-belt lifespan) may have affected the properties of proximal natural levee deposits throughout the fluvially-dominated part of the Rhine-Meuse delta. We then used these spatial divisions in an analysis of digital borehole data (>130.000 locations, UU-LLG dataset), to provide quantitative information of both architectural (i.e. thickness, sharpness of transition with channel deposits underneath) and lithological (i.e. composition, vertical trends within and across the lithological transition to eventual sandy deposits at depth) properties of these natural levee deposits. Worksheets presented here contain data presented in this study. 

The data is provided in 2 spreadsheet files in csv format. Detailed information about these files as well as information on how the data is processed is given in the explanatory file README_Chapter_3.txt. Contact person is Tim Winkels - timwinkels87@hotmail.com
DOI: 10.15468/dl.kuncwn
title: Occurrence Download

description: A dataset containing 78151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Procambarus clarkii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78151 records from 516 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005365-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kabgzn
title: Occurrence Download

description: A dataset containing 19585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (iNaturalist Research-grade Observations, India Biodiversity Portal publication grade dataset, Observation.org, Nature data from around the World)",
 "GadmGid is IND.25_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 19585 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005407-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24416/uu01-58oq4q
title: Chapter 4: Digital Data Supplements Rhine-Meuse delta in the Netherlands

description: In the unconstrained, low gradient setting of major delta plains, individual meander belts tend to function for relatively short periods of time due to repeated channel avulsion. Their short lifetime makes ‘deltaic’ channel belts suitable to study the products of steady meander evolution as the deposits and internal architectural elements preserved are often without complications of repeated bend cutoffs. This study investigated how sedimentary characteristics as preserved from subsequent stages of activity differ within the Stuivenberg channel belt. The Stuivenberg channel belt is a long-studied example in the Holocene Rhine-Meuse delta, The Netherlands, for which the meander evolution, i.e. geometry and dimensions through initiation, main activity and abandonment stages and durations of activity involved, was reconstructed. Mapping of the channel belt started from established coring based and LiDAR-aided methods. Explorative approaches were used to assess active channel width at the onset of abandonment, and to reconstruct meander positions during earlier stages. The migration history of five consec-utive meanders is revealed from convex and concave ridge-and-swale scrolls. Analysis identifies them to be the product of translation, expansion and rotation  trajectories during a period of 800 years.  Grain-size composition throughout the sand body is interpreted given these positional contexts, with special attention to local coarsening of upper point bar facies in deltaic meander belts.

The data is provided in 5 spreadsheet files in csv format. Detailed information about these files as well as information on how the data is processed is given in the explanatory file README_Chapter_4.txt. Contact person is Tim Winkels - timwinkels87@hotmail.com
DOI: 10.5281/zenodo.18497743
title: LLM Benchmarking (CHANGES Spoke 4)

description: Lista delle storie generate a partire dalla storia curatoriale interattiva con vari LLM ai fini del benchmarking
DOI: 10.5281/zenodo.18497744
title: LLM Benchmarking (CHANGES Spoke 4)

description: Lista delle storie generate a partire dalla storia curatoriale interattiva con vari LLM ai fini del benchmarking