cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4224/40002324
title: CF-105. N.A.E. spinning tunnel tests. Run schedule
title: C-105. N.A.E. spinning tunnel tests. Run schedule

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: digitized filename: Box-13\P-WT-153
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.34876/ca7d-e798
title: Dataset for the publication 'Going back to “basics”: Harlow’s learning set task with wolves and dogs'

description: Each row of the dataset represents a trial. The columns, from left to right, are as follows: subject (name of the subject), species ("wolf" or "dog"), sex ("m" or "f"), age_days (number of days that passed between the animal's birth and the date of the test), phase ("asso": first phase, associative learning; "acq": acquisition for reversal learning phase; "rev": reversal learning phase) set_no (number of set/reversal presented to the animals within the phase), date (dd/mm/yyyy format), session (number of session within the set/reversal), trial (number of trial within the session), pos_stimulus (identity of the positive stimulus), neg_stimulus (identity of the negative stimulus), pos_color (color of the positive stimulus), neg_color (color of the negative stimulus), correct_side (side of the correct stimulus: "l": left, "r": right), order_positive (1: positive stimulus presented first, 2: positive stimulus presented second, 0 or empty: no information available), outcome_session (1: successful session —9 or 10 correct trials out of 10—, 0: unsuccessful session —less than 9 correct trials), outcome_trial (1:correct, 0:incorrect), experimenter (identity of the experimenters, empty if the data is not available), notes.
description: Dataset for the publication:

Rivas-Blanco, D., Monteiro, T., Virányi, Z. et al. Going back to “basics”: Harlow’s learning set task with wolves and dogs. Learn Behav 52, 315–329 (2024). https://doi.org/10.3758/s13420-024-00631-6
DOI: 10.4224/40002123
title: Arrow 1 25201. Maintenance data record: electrics (fire detection): fire detection loop. Issues 1, 2 and 3

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: digitized filename: Box-18\Maintenance_data_record
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.15468/dl.7etuga
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mamíferos de la Ecoreserva CPF Cupiagua (Aguazul, Casanare) - Proyecto FIBRAS"
 ]
}

 The dataset includes 44 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002244-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13759863
title: Data: Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

description: This archive contains all scripts, resource data and results, including intermediate results to reproduce the results for "Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD".
DOI: 10.5281/zenodo.17671704
title: Data: Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

description: This archive contains all scripts, resource data and results, including intermediate results to reproduce the results for "Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD".
DOI: 10.5281/zenodo.17671780
title: Model code and outputs for "Nitrogen release from permafrost thaw may partially offset future soil carbon losses" by Rémi Gaillard, Patricia Cadule, Philippe Peylin and Bertrand Guenet.

description: These files are associated with "Nitrogen release from permafrost thaw may partially offset future soil carbon losses" by Rémi Gaillard, Patricia Cadule, Philippe Peylin and Bertrand Guenet.

It contains the code of the IPSL-Perm-LandN model and the model outputs for the piControl (yearly) and 1pctCO2 COU, COUnoPermN, BGC and BGCwithPermN (monthly) simulations.

Contact: Rémi Gaillard (gaillard@geologie.ens.fr).
DOI: 10.5281/zenodo.17671779
title: Model code and outputs for "Nitrogen release from permafrost thaw may partially offset future soil carbon losses" by Rémi Gaillard, Patricia Cadule, Philippe Peylin and Bertrand Guenet.

description: These files are associated with "Nitrogen release from permafrost thaw may partially offset future soil carbon losses" by Rémi Gaillard, Patricia Cadule, Philippe Peylin and Bertrand Guenet.

It contains the code of the IPSL-Perm-LandN model and the model outputs for the piControl (yearly) and 1pctCO2 COU, COUnoPermN, BGC and BGCwithPermN (monthly) simulations.

Contact: Rémi Gaillard (gaillard@geologie.ens.fr).
DOI: 10.4224/40002331
title: CF-105. .07 scale model. N.A.E. low speed reduction data

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: digitized filename: Box-13\P-WT-116
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.15468/dl.4q9m5c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophioirenina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002245-251120083545085/datasets/export for details.
DOI: 10.4224/40002328
title: C-105. Summary of wind tunnel testing on the C-105: stability, control and armament tests only

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: An additional copy has been deposited as ARCHIVE content. It has 49 p.
description: digitized filename: Box-13\P-WT-131_C2
description: digitized filename: Box-13\P-WT-131_C1
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.4224/40002330
title: CF-105. N.A.E. low speed wind tunnel tests July 1956: basic plots

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: An additional copy has been deposited as ARCHIVE content. It has 253 p.
description: digitized filename: Box-13\P-WT-119_LowSpeed_Tests_BP_C1
description: digitized filename: Box-13\P-WT-119_LowSpeed_Tests_BP_C2
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.15468/dl.czet4u
title: Occurrence Download

description: A dataset containing 2749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Meles meles"
 ]
}

 The dataset includes 2749 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002246-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17671949
title: knmf_2022-029-031475_AFM_20251118_163040
DOI: 10.5281/zenodo.17663280
title: Laminar solar wind Menura simulation

description: These are the data for magnetic field, density, parallel and perpendicular ion temperature and the parallel ion beta parameter analysed in the Ballerini et al paper, in the laminar solar wind condition simulation (Run 1)
DOI: 10.4224/40002329
title: CF-105. N.A.E. low speed wind tunnel tests July 1956
title: CF-105. N.A.E. low speed W/T tests July 1956

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: digitized filename: Box-13\P-WT-119_low_speed_tests
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.15468/dl.ygw7dn
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.77443 49.70281,-3.67687 49.70281,-3.67687 51.1621,-5.77443 51.1621,-5.77443 49.70281))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Laminaria digitata",
 "Year 2024-2025"
 ]
}

 The dataset includes 58 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002248-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4224/40002332
title: C-105. 0.03 Langley wind tunnel tests: M = 1.41 April 1956: plots
title: C-105. 0.03 Langley W/T tests: M = 1.41 April 1956: plots

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: digitized filename: Box-13\P-WT-111
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.4224/40002333
title: CF-105. N.A.E. low speed wind tunnel tests January 1956: longitudinal derivatives and comparison with C.A.L.

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: An additional copy has been deposited as ARCHIVE content. It has 29 p.
description: digitized filename: Box-13\P-WT-108_C1
description: digitized filename: Box-13\P-WT-108_C2
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.4224/40002335
title: CF-105. N.A.E. low speed wind tunnel tests: January 1956: final corrected plots

description: digitization device: Fujitsu fi-6770
description: digitized by: The Brechin Group Inc.
description: An additional copy has been deposited as ARCHIVE content. It has 91 p.
description: digitized filename: Box-13\P-WT-98_C2
description: digitized filename: Box-13\P-WT-98_C1
description: Distributed online by the National Research Council of Canada
description: Distribué en ligne par le Conseil national de recherches du Canada
DOI: 10.15468/dl.xp9n5k
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Endomeliola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002250-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2nw56y
title: CCDC 2468970: Experimental Crystal Structure Determination

description: Related Article: Jie Zhu, Yue Zhao, Shengming Ma, Minyan Wang|2025|Angew.Chem.,Int.Ed.|64|e202515183|doi:10.1002/anie.202515183
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nw57z
title: CCDC 2468971: Experimental Crystal Structure Determination

description: Related Article: Jie Zhu, Yue Zhao, Shengming Ma, Minyan Wang|2025|Angew.Chem.,Int.Ed.|64|e202515183|doi:10.1002/anie.202515183
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p051y
title: CCDC 2472809: Experimental Crystal Structure Determination

description: Related Article: Segun D. Oladipo, Robert C. Luckay|2026|Inorg.Chim.Acta|590||doi:10.1016/j.ica.2025.122977
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p052z
title: CCDC 2472810: Experimental Crystal Structure Determination

description: Related Article: Segun D. Oladipo, Robert C. Luckay|2026|Inorg.Chim.Acta|590||doi:10.1016/j.ica.2025.122977
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p0530
title: CCDC 2472811: Experimental Crystal Structure Determination

description: Related Article: Segun D. Oladipo, Robert C. Luckay|2026|Inorg.Chim.Acta|590||doi:10.1016/j.ica.2025.122977
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p4wmc
title: CCDC 2477353: Experimental Crystal Structure Determination

description: Related Article: Xiang-Tao Dong, Ting Zhu, Rong-Yan Zhang, Guo Peng, Lijun Fu, Xiao-Ming Ren|2025|Dalton Trans.|54|16805|doi:10.1039/d5dt02266e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p4wnd
title: CCDC 2477354: Experimental Crystal Structure Determination

description: Related Article: Xiang-Tao Dong, Ting Zhu, Rong-Yan Zhang, Guo Peng, Lijun Fu, Xiao-Ming Ren|2025|Dalton Trans.|54|16805|doi:10.1039/d5dt02266e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p4wpf
title: CCDC 2477355: Experimental Crystal Structure Determination

description: Related Article: Xiang-Tao Dong, Ting Zhu, Rong-Yan Zhang, Guo Peng, Lijun Fu, Xiao-Ming Ren|2025|Dalton Trans.|54|16805|doi:10.1039/d5dt02266e
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pb417
title: CCDC 2482388: Experimental Crystal Structure Determination

description: Related Article: Liang Tian, Yiman Cao, Can Chen, Zhigang Ni, Cong Fan, John Mack, Peidi Dai, Hua Lu, Lizhi Gai|2025|Chem.Commun.|||doi:10.1039/d5cc05461c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30675641
title: MD simulation results of Diclofenac with COX-2 protein

description: MS simulation data files of diclofenac and COX2
DOI: 10.6084/m9.figshare.30675641.v1
title: MD simulation results of Diclofenac with COX-2 protein

description: MS simulation data files of diclofenac and COX2
DOI: 10.5281/zenodo.17670532
title: mOTUs Tree (v4)

description: Phylogenetic tree of the mOTUs 4.0 species level clusters (mOTUs tool, mOTUs-db).

 

Marker Selection and Pre-processing



Phylogenetic reconstruction was performed separately for the bacterial and archaeal domains using a set of 10 universal marker genes extracted from the representative genomes (n=124'295) of the mOTUs database.



Marker Set: The following Single Copy Marker genes were used: COG0012, COG0016, COG0018, COG0172, COG0215, COG0495, COG0525, COG0533, COG0541, and COG0552.

Filtering: To prevent alignment artifacts caused by outliers (e.g., gene fusions or assembly errors), the top 1% longest sequences were removed from the dataset using a custom Python script prior to alignment.


Alignment and Concatenation



Alignment: Sequences were aligned using MAFFT (v7.505) with the --auto parameter.

Trimming: Alignments were trimmed using trimAl (v1.4.rev15) with a gap threshold of 0.7 (-gt 0.7)

Concatenation: The filtered individual gene alignments were concatenated into a single concatenate (one for each domain) using a custom Python script.


Summary of Alignment Statistics:




Metric
Bacteria
Archaea




Total Genomes
120,445
3,850


Alignment Length
4,552 aa
4,811 aa




Phylogenetic Inference

Due to the vast difference in dataset size between the two domains, different inference strategies were employed to balance accuracy and computational efficiency.

Bacteria (Approximate Maximum Likelihood)

Given the large scale of the bacterial dataset (>120k genomes), the tree was inferred using FastTree (v2.1.11).



Command parameters: -lg -gamma -fastest -noml


Archaea (Maximum Likelihood)

The archaeal dataset was processed using IQ-TREE 2 (v2.2.2.3), allowing for a more exhaustive Maximum Likelihood analysis.

 



Command parameters: -m MFP -B 1000
DOI: 10.5281/zenodo.17670533
title: mOTUs Tree (v4)

description: Phylogenetic tree of the mOTUs 4.0 species level clusters (mOTUs tool, mOTUs-db).

 

Marker Selection and Pre-processing



Phylogenetic reconstruction was performed separately for the bacterial and archaeal domains using a set of 10 universal marker genes extracted from the representative genomes (n=124'295) of the mOTUs database.



Marker Set: The following Single Copy Marker genes were used: COG0012, COG0016, COG0018, COG0172, COG0215, COG0495, COG0525, COG0533, COG0541, and COG0552.

Filtering: To prevent alignment artifacts caused by outliers (e.g., gene fusions or assembly errors), the top 1% longest sequences were removed from the dataset using a custom Python script prior to alignment.


Alignment and Concatenation



Alignment: Sequences were aligned using MAFFT (v7.505) with the --auto parameter.

Trimming: Alignments were trimmed using trimAl (v1.4.rev15) with a gap threshold of 0.7 (-gt 0.7)

Concatenation: The filtered individual gene alignments were concatenated into a single concatenate (one for each domain) using a custom Python script.


Summary of Alignment Statistics:




Metric
Bacteria
Archaea




Total Genomes
120,445
3,850


Alignment Length
4,552 aa
4,811 aa




Phylogenetic Inference

Due to the vast difference in dataset size between the two domains, different inference strategies were employed to balance accuracy and computational efficiency.

Bacteria (Approximate Maximum Likelihood)

Given the large scale of the bacterial dataset (>120k genomes), the tree was inferred using FastTree (v2.1.11).



Command parameters: -lg -gamma -fastest -noml


Archaea (Maximum Likelihood)

The archaeal dataset was processed using IQ-TREE 2 (v2.2.2.3), allowing for a more exhaustive Maximum Likelihood analysis.

 



Command parameters: -m MFP -B 1000
DOI: 10.5517/ccdc.csd.cc2pb428
title: CCDC 2482389: Experimental Crystal Structure Determination

description: Related Article: Liang Tian, Yiman Cao, Can Chen, Zhigang Ni, Cong Fan, John Mack, Peidi Dai, Hua Lu, Lizhi Gai|2025|Chem.Commun.|||doi:10.1039/d5cc05461c
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lzxj1
title: CCDC 2412994: Experimental Crystal Structure Determination

description: Related Article: Linfeng Lan, Yuxing Zhou, Liang Li, Chenguang Wang, Panče Naumov, Hongyu Zhang|2025|J.Am.Chem.Soc.|||doi:10.1021/jacs.5c15122
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ps8xp
title: CCDC 2495993: Experimental Crystal Structure Determination

description: Related Article: D.A. Haleliuk, L. Baltag, D.D. Naumova, V.O. Zozulia, S.V. Partsevska|2025|Acta Crystallogr.,Sect.E:Cryst.Commun.|81|1067|doi:10.1107/S2056989025009065
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ptw9q
title: CCDC 2497524: Experimental Crystal Structure Determination

description: Related Article: A.J. N'Gouan, H. Bazié, S.D. Goulizan Bi, A. Djandé, R. Kakou-Yao, C. Lecomte|2025|IUCrData|10|x250937|doi:10.1107/S241431462500937X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.xntq9b
title: Occurrence Download

description: A dataset containing 2319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Phylloscopus occipitalis",
 "Year 2024-2025"
 ]
}

 The dataset includes 2319 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002251-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15863806
title: Supporting Data for: "Edge-State Selective Measurement of Dispersions in the Quantum Hall Regime"

description: Data used for the creation of figures in "Edge State Selective Measurement of Quantum Hall Dispersions". 

All files are label first by the respective figure they appear in. 

1D traces are two columns of x-y data respectively, while 2D maps are NxM tables, where the first column/ row correspond to the axis values.