cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m0nh6/1
title: Data for Pearce-Higgins et al. 2015

description: Excel spreadsheet of population indices for England (1966-2011), monthly temperature and precipitation data, and species traits (migration strategy, species temperature index, species specialisation index)
DOI: 10.5061/dryad.n914n/2
title: A. narinari microsatellite genotype data

description: Nuclear genotype data from 10 microsatellite loci collected from A. narinari in the Gulf of Mexico and northern Carribean Sea.
DOI: 10.5061/dryad.12c56/1
title: Raw data of Sedlacek et al. 2015 in PLOS ONE

description: This is the data set used for the analyses presented in Sedlacek et al. 2015 (PLOS ONE). The data come from a reciprocal transplant experiment of Salix herbacea plants between snowbed and ridge microhabitats in the Swiss Alps. On the transplanted plants, we determined phenology (leaf expansion, flowering, fruiting), damage by herbivores and pathogens, leaf size, and fitness proxies (flowering and change in stem number).
DOI: 10.5061/dryad.3t082/1
title: Testis tissue data
DOI: 10.5061/dryad.49n4k/3
title: HUC4 membership in each of the defined freshwater fish provinces.

description: Names of the defined regions for each of the 204 HUC4s
DOI: 10.5061/dryad.50dr8/1
title: Appendix B

description: Raw data and sources
DOI: 10.5061/dryad.65k7t/3
title: Fig_4_SVP_AGL24_genes

description: Unrooted Bayesian consensus tree of MADS-box proteins from the SVP/AGL24 subfamily in peach, Arabidopsis, grapevine, poplar, maize, sorghum, and rice. Bayesian posterior probabilities for all clades are given at their respective nodes.
DOI: 10.5061/dryad.65k7t/4
title: Fig_5_FLC_genes

description: Unrooted maximum likelihood phylogenetic tree of MADS-box proteins from the FLC subfamily in peach, Arabidopsis, grapevine, poplar, maize, sorghum, and rice. Bayesian posterior probabilities for all clades are given at their respective nodes.
DOI: 10.5061/dryad.7ht20/1
title: SalamanderSpectraJEB2015Kraemer

description: Reflectance spectra from all salamanders in the study can be found in this file, as well as salamander conspicuousness as calculated for the main analyses.
DOI: 10.5061/dryad.d0r79/3
title: Metabarcode_OTU_table

description: The column "source ID" presents how each OTU was identified. SAP: Statistical assignment Package; NCBI/BOLD: &gt;97% match to a reference barcode in NCBI and/or BOLD barcode databases; 2mm: match an OTU identified via DNA barcoding in the &gt;2mm fraction; 500μm: match an OTU identified via DNA barcoding in the 2mm-500μm fraction
The second sheet lists all OTUs that were discarded because they matched bacterial or non-COI sequences in NCBI.
DOI: 10.5061/dryad.d0r79/5
title: Metabarcode_OTUrepresentatives

description: The file contains one representative sequence per OTU
DOI: 10.5061/dryad.d51j3/1
title: Unphased and phased sequence alignments

description: Contains one unphased and one phased FASTA file per locus. The unphased files contain a single sequence per individual, where heterozygous sites are coded as ambiguous bases and missing sites as "?". The phased files contain two reconstructed haplotypes per individual, where missing sites have been imputed using PHASE. Note that all files contain polymorphic sites only.
DOI: 10.5061/dryad.d51j3/2
title: Haplotype reference panels

description: Contains anonymised known haplotypes for haplotype reconstruction using PHASE.
DOI: 10.5061/dryad.d51j3/3
title: Phenotypic data

description: Contains the following phenotypic measurements and sampling-related meta data: Age (Y=&lt;1 year, O=&gt;1 year), Sex, comb area (mm^2), body mass (g), population ID (1-21), presence/absence of anthelmintic grit and nematode burden (worms per bird).
DOI: 10.5061/dryad.gb291/1
title: 031314_21886_MS_v.mzXML.zip
DOI: 10.5061/dryad.gb291/2
title: 031314_21886_MS_v
DOI: 10.5061/dryad.gb291/3
title: 031314_21887_MS_v.mzXML
DOI: 10.5061/dryad.gb291/4
title: 031314_21887_MS_v
DOI: 10.5061/dryad.kp328/1
title: normalized_data_batch2

description: Microarray data of GAGA overexpression in wing disk
DOI: 10.5061/dryad.kp328/2
title: normalized_data_batch3

description: Microarray data of GAGA depleted wing disks
DOI: 10.5061/dryad.m3b77/1
title: Data from: Nutritional status and nosocomial infections among adult elective surgery patients in a Mexican tertiary care hospital

description: Chracarteristics of patients from study: Nutritional status and nosocomial infections among adult elective surgery patients in a Mexican tertiary care hospital.
DOI: 10.5061/dryad.p0h0v/1
title: Data set of seed production and environmental factors (Perez-Ramos et al. 2015_JEcol)

description: Annual mean production of initial (including abortions) and mature seeds for the two study oak species (Quercus canariensis and Quercus suber) over the ten sampling years (from 2002 to 2011) and their associated environmental variables (temperature, precipitation, water limitation and drought index).
DOI: 10.5061/dryad.ph812/1
title: Proceedings B Dryad
DOI: 10.5061/dryad.q2k7k/1
title: Habitat characteristics of raccoon dog observations at multiple spatial scales

description: Habitat characteristics (habitat type, distance to roads and water, elevation, slope, and length of growing season) for raccoon dog GPS-locations (Scale = 0) and paired random points located within a given distance (Scale &gt; 0 m). Data is aggregated per individual trajectory, season, and light period (day, night, twilight). For further details, see the article.
DOI: 10.5061/dryad.q83d0/1
title: EMG, torque, and feature analysis data from Manduca flight muscle during tethered yaw turns

description: see ReadMe.txt
DOI: 10.5061/dryad.r2b1n/1
title: Data of SSNHL_Group

description: data of sudden deafness patients.
DOI: 10.5061/dryad.r2b1n/2
title: data_of_control_972

description: Data of Control group
DOI: 10.5061/dryad.4767b/1
title: Simulation results

description: Trajectory and waveform data for elastohydrodynamic simulations of sperm swimming over geometric features.
DOI: 10.5061/dryad.49n4k/1
title: Salinity Classification for Freshwater Fish

description: Check list of the 794 species, family membership, and salinity tolerance classification.
DOI: 10.5061/dryad.61dg2/2
title: Health-related lifestyle behaviors among male and female rural-to-urban migrant workers in Shanghai, China
DOI: 10.5061/dryad.61dg2/3
title: Codebook
DOI: 10.5061/dryad.65624/1
title: Measurements(AsianRanavalonaeGroup)

description: measurements and indices of the described species
DOI: 10.5061/dryad.7cj77/5
title: SupplementaryInformation_USYB-2014-217_R2

description: Supplementary material includes TABLES S1 to S6 and FIGURES S1 to S3
DOI: 10.5061/dryad.7cj77/6
title: Dataset1_USYB-2014-217_R2

description: DATASET S1. Voucher information (a), including the code sample, geographic coordinates and the geographic origin, and GenBank accession numbers (b) and for each specimen analyzed. A total of 1925 cpDNA and 465 nrDNA sequences were produced for an overall of 649 specimens analyzed. A dash in a given locus column indicates that the sequencing failed; an empty cell indicates that that particular locus was not used for a given species
DOI: 10.5061/dryad.7vb83/1
title: Feo-2015_PRSB_PaperData

description: Measurements of modern flying, modern flightless, and Mesozoic stem bird feathers.
DOI: 10.5061/dryad.bk583/1
title: Representation data

description: Representation data for all cohorts and sampling occasions/life stages
DOI: 10.5061/dryad.bk583/2
title: Size at age data

description: Size at age data for all cohorts and sampling occasions/life stages.
DOI: 10.5061/dryad.bm714/1
title: MFI of HY-microarray 3m postHCT in FtoM pts
DOI: 10.5061/dryad.bm714/2
title: MFI of HY-microarray of healthy subjects
DOI: 10.5061/dryad.d4500/1
title: microsatellite genotype

description: First sheet contains the breed code, second sheet contains the breed- cluster abbraviations, third sheet contains the genotype for 4 microsatellite genotype dataset, fourth sheet contains the 30 microsatellite genotype dataset
DOI: 10.5061/dryad.f2m2s/1
title: Canoparmelia_dataset

description: This data file comprises a zipped folder that contains the input files used for three sets of molecular phylogenetic analyses in this study.
DOI: 10.5061/dryad.gb291/10
title: RAW files

description: The RAW files in this dataset can be converted to .mzXML using Proteowizard (available at http://proteowizard.sourceforge.net) and then viewed using Skyline (available through MacCoss Lab at https://skyline.gs.washington.edu/labkey/project/home/begin.view).
DOI: 10.5061/dryad.gb291/5
title: 031314_21888_MS_v.mzXML
DOI: 10.5061/dryad.gb291/6
title: 031314_21888_MS_v
DOI: 10.5061/dryad.gb291/7
title: 031314_21889_MS_v.mzXML
DOI: 10.5061/dryad.gb291/8
title: 031314_21889_MS_v
DOI: 10.5061/dryad.gb291/9
title: mzXML files
DOI: 10.5061/dryad.kh886/1
title: Alignments from Pediculus schaeffi assemblies

description: This zip file contains folders with alignments from the assembly of Pediculus schaeffi genes using aTRAM, reference-based and de novo approaches.  The alignments include each of these assemblies compared with the reference species Pediculus humanus as well as to each of the other assembly methods.
DOI: 10.5061/dryad.kh886/2
title: Alignments from aTRAM assemblies across taxa

description: Alignments of 1,107 aTRAM gene assemblies from six taxa. Each gene and each taxon is aligned to the reference sequence of Pediculus humanus.
DOI: 10.5061/dryad.m2n6f/1
title: Richardson_et_al_2015

description: This MS Excel table includes four datasets described in our publication. There are two experiments, abbreviated as "exp1" and "exp2". The former has just one tab in the table; the latter has three tabs, each attributed according to what data they present. All column headings are defined in an additional metadata tab, and no other user guidance should be necessary.
DOI: 10.5061/dryad.mm5m1/1
title: Hetherington_AJ_et_al_ESM

description: Cladistic and geometric morphometric datasets on which this study is based.
DOI: 10.5061/dryad.qr2vv/1
title: sequences alignments used in this study

description: The alignments/matrixes include two nrDNA sequences (ITS and ETS) and four plastid sequences (rbcL, atpB-rbcL, matK and trnDT) and the combined data matrix of the four plastid sequenced just mentioned. The sequences were assembled using Geneious v5.4  and aligned with Muscle. The combined plastid matrix and nrDNA ITS and ETS were used for: (1) phylogenetic analysis, include maximum parsimony method implemented in PAUP* v4.0b10 and maximum likelihood method implemented in raxML v7.2.8;and (2) phylogenetic network analysis implemented in Dendroscope v3.2.8. The combined plastid matrix was also used for divergence time estimation implemented in BEAST v1.5.4 and character evolutionary analysis implemented in Mesquite v2.75.
DOI: 10.5061/dryad.138cg/1
title: DTAG data (depth, accelerometer, magnetometer)

description: DTAG data of a Blainville's beaked whale (Mesoplodon densirostris) deep dive, adult male tagged on the 5th September 2007 (tag on position: 24.3839 N, 77.5615 W). Columns are time (in second), depth (in m), 3-axis accelerometer values (no unit), 3-axis magnetometer values (no unit). Accelerometer and magnetometer values are in the tag frame and were normalized with respect to the norm of the Earth gravitational and magnetic fields at the tag location. Data provided are at 5 Hz, the recording lasts 51'20, time in the table starts at tag-on (t=460 s; t=0 s in the paper).
DOI: 10.5061/dryad.138cg/2
title: DTAG data (acoustics)

description: Acoustic DTAG data of a Blainville's beaked whale (Mesoplodon densirostris) deep dive, adult male tagged on the 5th September 2007 (tag on position: 24.3839 N, 77.5615 W). Data provided were downsampled at 24 kHz, mono, the recording lasts 51'20.
DOI: 10.5061/dryad.4ft57/1
title: Neolebouria georgenascimentoi
DOI: 10.5061/dryad.4ft57/2
title: Tree Neolebouria sp-Fig2

description: Phylogenetic tree realized for Figure 2. DATA: Neolebouria sp NJ, phylogenetic tree of Neolebouria spp. made with the V4 region. Neighbor-Joining algorithm and TN93 model was used; Neolebouria sp ML-TN93, phylogenetic tree of Neolebouria spp. made with the V4 region. Maximum Likelihood algorithm and TN93 model was used; Neolebouria sp BI, phylogenetic tree of Neolebouria spp. made with the V4 region. Bayesian Inference algorithm and HKY+G model was used.
DOI: 10.5061/dryad.4ft57/3
title: Table sequences Neolebouria georgenascimentoi

description: Details (host, localities, year, etc.) of sequences of the file Neolebouria georgenascimentoi
DOI: 10.5061/dryad.51p67/1
title: jab_island

description: Data set used to analyze the data. Legends are provided for each column.
DOI: 10.5061/dryad.528nm/1
title: Microsatellite genotypes in Kryptolebias marmoratus from Central America

description: Genotypes of 32 microsatellite loci in 243 individuals of Kryptolebias marmoratus from Belize and Honduras. Genotypes are arranged in 1-column format.
DOI: 10.5061/dryad.58p0t/2
title: Water column nutrient concentrations in response fertilizer addition

description: We experimentally tested the effectiveness of slow release fertilizer (Osmocote) for increasing nutrient concentrations at the scale of our replicates and not in adjacent replicates 3 m away. Plot: plot ID. nutrient trtm: nutrient treatment (Y = fertilizer satchel added; N3 is 3m away from fertilizer satchel, N7 = 7m away from satchel to measure ambient nutrient concentrations). dist.to.satchel.m = distance from fertilizer satchel in meters. init.nut.weight is dry mass of fertilizer pellets in g before placing it in the field, fin.nut.weight is final dry mass after three days at the study site. PO4.uM, SiO2.uM, and NOx.uM are nutrient concentrations measured in uM.
DOI: 10.5061/dryad.5mv53/1
title: Clean pyrosequencing data

description: These sequences were checked against the following quality criteria: (i) no Ns, (ii) quality score ≥ 23 according to the PANGEA process (Giongo et al., 2010), (iii) a minimum sequence length of 200 bp, and (iv) no sequencing error in the forward primer. The scripts used were quality.pl and preprocess.pl implemented in the pipeline PANAM (http://code.google.com/p/panam-phylogenetic-annotation /downloads /list) described more in detail in the related paper (Taib et al. 2013).
DOI: 10.5061/dryad.5mv53/2
title: Table1_data

description: Similarity and phylogenetic indices determined for each  phylogenetic units (PUs) presented in the table 1
DOI: 10.5061/dryad.5mv53/3
title: Phylogeny_fasttree_files

description: This compressed file aggregates the FastTree files (newick format) generated by the script panam.pl
DOI: 10.5061/dryad.5mv53/4
title: synthese_OTU_RNA_DNA

description: OTUs with the taxonomies, the DNA and RNA abundances (tab delimited)
DOI: 10.5061/dryad.60mm2/1
title: Liebeskind2015PNAS.tar

description: Sequences, alignments, trees, and other data used in ancestral genome content analysis.
DOI: 10.5061/dryad.6246r/1
title: All data

description: The data folder contains four files. The file "fronhofer_experimental_evolution_main_data.txt" contains the time series data of population densities, movement patterns and morphology for range core and range margin populations. The file "fronhofer_experimental_evolution_dispersal_rates_font.txt" contains the data used in Fig. 1b, i.e. the dispersal rates of populations from the range margin at the beginning and at the end of the experiment. The file "fronhofer_common_garden_movement_data.txt" contains the data shown in Fig. 1c, i.e. the movement data of margin and core populations after the 2-day common garden period. The file "fronhofer_common_garden_growth_data.txt" contains the data depicted in Fig. 2, i.e. the growth data of margin and core populations (additionally also the data from "residents only"; see Supplementary Information) recorded after 2 days of common garden.
DOI: 10.5061/dryad.6246r/2
title: Code
DOI: 10.5061/dryad.7sf28/1
title: Microsatellite dataset for Leucosceptrum

description: Microsatellite dataset (10 markers) given here as a Genepop input file.The file contains data from 313 individuals sampled from three sympatric populations and six mixed populations in a hybrid zone between Leucosceptrum japonicum and L. stellipilum, and five reference populations far from the hybrid zone.
DOI: 10.5061/dryad.802bs/1
title: Cuban_Parrot_JOH_DRYAD
DOI: 10.5061/dryad.bf63c/1
title: data_habitat

description: Site: locality in Thailand, Laos and Cambodian. longitude: GPS coordinates. latitude: GPS coordinates. Patch density: density of patches of the different land cover types. Border density: density of the contours of all patches. Annual rate of deforestation: the annual rate of deforestation (r) in each locality is obtained using the following formula r=1/(t2-t1) * Ln (A2/A1), where A1 and A2 are the forest cover at time t1 and t2, and values of A1 and A2 were obtained from the land use changes detection. Rodent species richness: number of rodent species trapped in each locality. Number of individual rodents: number of rodent individuals investigated for helminths. Helminth species richness: number of helminth species in rodents investigated in each locality. Zoonotic helminths: number of zoonotic helminth species. Helminths with complex life cycle: number of helminth species with complex life-cycle. Helminths with direct life cycle: number of helminth species with direct life-cycle. Modularity all helminths: extent to which the network is divided to subgroups composed of rodent-helminth species that interact more among themselves than outside the subgroup. Connectance all helminths: sum of potential links between rodent species and helminth species divided by the standardized number of combinations. Modularity clc: extent to which the network is divided to subgroups composed of rodent-helminth with complex life-cycle species that interact more among themselves than outside the subgroup. Connectance clc: sum of potential links between rodent species and helminth species with complex life-cycle divided by the standardized number of combinations
DOI: 10.5061/dryad.cc3jg/1
title: Larvae_Pupae_body_content_Audusseau_et_al

description: Data on body content of nitrogen and phosporus (% dry mass) according to species (Aglais urticae, Aglais io, Polygonia c-album), plant fertilization treatment, and stage (Larva L or Pupa P).
DOI: 10.5061/dryad.hq701/1
title: Relative_fitness_Epistasis_Dsouza_et_al_2015

description: The file consists of data showing the fitness (expected and observed) relative to the wild type and epistasis of different auxotrophic genotypes in minimal media with either fructose or succinate as the carbon source. The file also contains data of control experiments showing fitness relative to the wild type of genotypes subject to successive rounds of transduction with the same phage genotype and also the fitness (Malthusian parameter) of auxotrophic genotypes with and without the kanamycin resitance cassette.
DOI: 10.5061/dryad.mb32q/1
title: RFFT longitudinal data Groningen the Netherlands

description: IBM SPSS Statistics version 22 file including the individual data on longitudinal performance on the Ruff Figural Fluency Test (RFFT) of 2,515 participants of the Prevention of Renal and Vascular ENd-stage Disease (PREVEND) study, city of Groningen, the Netherlands. Performance on the RFFT was measured three times over an average follow-up period of six years.
DOI: 10.5061/dryad.mb32q/2
title: RFFT longitudinal data Groningen the Netherlands

description: CSV file including the individual data on longitudinal performance on the Ruff Figural Fluency Test (RFFT) of 2,515 participants of the Prevention of Renal and Vascular ENd-stage Disease (PREVEND) study, city of Groningen, the Netherlands. Performance on the RFFT was measured three times over an average follow-up period of six years.
DOI: 10.5061/dryad.nb675/1
title: Data from the experiment where the effect of bract manipulation on seed mass of hand-pollinated blossoms was investigated.

description: FemaleID: identity code of the maternal plantMaleID: identity code of the paternal plantped1: peduncle diameter first measurement ped2: peduncle diameter second measurementpoll: pollination datecrossID: identity code for the cross (equivalent to a unique blossom identity code)treatcode: code for the treatment: cut = bracts removed; cutcont= control for the cutting experiment; bag = blossom shaded; cont = non-manipulated control harvest: date harvestingseedID: identity number for each seed within each blossomseedset	: blossom seed setseedmass: mass of individual seeds in mgdate.weight: seed weight measuring date ped: average of the two measurements of the peduncle diametertime: maturation time in days (harvesting date – pollination date)
DOI: 10.5061/dryad.nb675/2
title: Measurements of gas exchange in Dalechampia scandens

description: Plant_ID: Identity of the plantsColor: green = blossom with green bracts; white = blossom with white bract; leaf = leaf Replicate: replicate identity. Together with the plant_ID this provides a single ID number for each blossom analyzed. Bract: No_Bract = measurements with bracts removed; Bract = measurement with blossom intact; leaf = measurements on leaf.AN: gas exchange in the light (carbon assimilation)Area_Leaf: area of the structure from which gaze exchange is measured. For the blossom with bract removed this is a rough measurement of the fruits area (not used in the analysis). R: gas exchange in the dark (respiration – negative value) = RGPP: Gross photosynthetic rate =  AN – RGPPnett: Gross photosynthetic rate: this correspond to the GPP of the blossom with the bracts minus the GPP of the blossom with the bract removed. This is why this value is given only for the rows where the value for the bract column is “Bract” or “Leaf”
DOI: 10.5061/dryad.r98g7/1
title: Biolog data

description: Intensity values produced by the Biolog's OmniLog Incubator/Reader. Cells of the Bacterium Yersinia enterocolitica (strains 53/03 and 8081c) were cultured on Biolog's PM1 plate and incubated for 48 hours at 28 and 37 degrees Celcius. Each of the four strain/temperature combinations was replicated three times.
DOI: 10.5061/dryad.49n4k/2
title: Freshwater Fish Distributions by HUC4

description: Presence-absence matrix for the 794 freshwater fish species in the 204 HUC4 basins for the continental United States.
DOI: 10.5061/dryad.57sg5/1
title: ComplData__Brunet_etal_BMC_6624500221359074.tar

description: Sequence alignment data for ADAMTS proteins across species.
DOI: 10.5061/dryad.58p0t/1
title: Abundances of individual eelgrass mesograzer species on Artificial Seagrass Units (ASUs)

description: To examine the relative importance of bottom-up and top-down control of the eelgrass (Zostera marina) mesograzer community, nutrients (2 levels) and predators (3 levels) were manipulated in a full factorial experimental design (n = 10 replicates per treatment combination) for seven weeks (June 17 – July 28, 2011). 60 artificial seagrass units (ASUs) were randomly arranged in three rows, parallel to the shore in the subtidal Z. marina zone, and distributed such that ASUs were separated by 3 m within and between rows. ASUs were made of frayed rope (length = 35 cm) to mimic seagrass or branching algal habitat, and were used to sample mesograzers on a standard surface area. This data file gives the abundances of the eight mesograzers on ASUs for each treatment. Cage.Trt: the predator exclusion cage treatment (full = full cage/predator exclusion; partial = partial cage/predators have access/cage control; none = no cage/predator have access/control). Nut.Trt: the nutrient addition treatment (0 = no nutrients added; 1 = nutrients added (30 g Osmocote slow release fertilizer)).
DOI: 10.5061/dryad.7p60n/1
title: data_2.313_5

description: a .mat file containing all data needed to run the cognitive movement model for a single animal: AU313
DOI: 10.5061/dryad.9tt2t/1
title: Macrauchenia_MLP 71-III-6-1

description: Proteomics MGF file.
DOI: 10.5061/dryad.9tt2t/2
title: Macrauchenia_Museo Olavarria (MO)

description: Proteomics MGF file.
DOI: 10.5061/dryad.9tt2t/3
title: Toxodon_MLP 81-II-5-7

description: Proteomics MGF file.