cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5904/wgms-glathida-2020-10
title: Glacier Thickness Database (GlaThiDa)

description: Internationally collected, standardized dataset on glacier thickness from in-situ and remotely sensed observations, based on data submissions, literature review and airborne data from NASA’s Operation IceBridge. GlaThiDa is a contribution to the working group on “Glacier ice thickness estimation“, which was formed under the auspices of the International Association of Cryospheric Sciences (IACS).
DOI: 10.6084/m9.figshare.744841
title: R and data files for the Tansley Lecture paper

description: Script and data files associated with the paper "Rapid Evolution: From Genes to Communities, and Back Again? The 2012 Tansley Lecture" by S.P. Ellner, published in Functional Ecology.
DOI: 10.5281/zenodo.8325538
title: Datasets from 'Phonon Signatures in Photon Correlations'

description: Datasets associated with the PRL publication 'Phonon Signatures in Photon Correlations'. The data for figures 1-4 and 4-7 of the supplemental material are also supplied. The data is a table of times (t and tau for respective figures) and correlation functions. This data was used for plotting the figures which are in the manuscript.
DOI: 10.25582/data.2021-07.2290556/2044509
title: Data for EMSL Project 51127 from July 2021
DOI: 10.25582/data.2021-07.2289661/2044510
title: Data for EMSL Project 51127 from July 2021
DOI: 10.25582/data.2021-07.2292439/2044511
title: Data for EMSL Project 51127 from July 2021
DOI: 10.15482/usda.adc/1503959
title: Frankliniella occidentalis genome annotations v0.5.3
DOI: 10.17632/kr4wxrd9bb.1
title: DATA: Microphysical characteristics of cyclonic rainfall: A GPM-DPR based study over the Arabian Sea

description: This final process data of the different parameters for understanding the precipitation characteristics of the tropical cyclone over the Arabain Sea. It is used for understanding the microphysical characteristics of the tropical cyclone formed  during the onset phase of the Indian Summer Monsoon (June, July, August, and September) and Post-monsoon (October, November and December) season.
DOI: 10.25550/1wwp
title: Marazita/Weinberg. 3D Facial Norms Database

description: Although ample evidence exists that facial appearance and structure are highly heritable, there is a dearth of information regarding how variation in specific genes relates to the diversity of facial forms evident in our species. With the advent of affordable, non-invasive 3D surface imaging technology, it is now possible to capture detailed quantitative information about the face in a large number of individuals. By coupling state- of-the-art 3D imaging with advances in high-throughput genotyping, an unparalleled opportunity exists to map the genetic determinants of normal facial variation. An improved understanding of the relationship between genotype and facial phenotype may help illuminate the factors influencing liability to common craniofacial anomalies, particularly orofacial clefts, which are among the most prevalent birth defects in humans. This proposal has two major goals: (1) to construct a nonnative repository of 3D facial and genetic data and (2) to utilize this data repository to identify genes that influence normal midfacial variation. The first goal will focus on data generation and resource development and will involve the collection of 3D facial surface images and DNA samples on 3500 healthy Caucasian individuals (age 5-40) drawn from the general population. Quantitative facial measures will be extracted from the 3D images and all DNA samples will be genotyped for genome-wide SNP markers. Working in conjunction with the FaceBase hub, our intent is to create a scalable. Interactive and minable data resource available to outside investigators, which will contain facial measures, 3D images and genotypes. Ultimately, it is hoped that such a database will facilitate novel research initiatives. To illustrate this potential, the second goal of this proposal will focus on identifying SNPs associated with variation in midfacial morphology, including those facial features relevant to orofacial cleft predisposition. Salient measures of midfacial morphology will be derived from 3D facial surface images, and a genome-wide association approach will then be employed to identify polymorphisms that influence quantitative variation in the facial features of interest.
DOI: 10.25582/data.2021-07.2283568/2044512
title: Data for EMSL Project 51127 from July 2021
DOI: 10.5066/p95g11fe
title: Data Describing Site Characteristics Including Conifer Regeneration Following the 2018 Carr Fire in Whiskeytown National Recreation Area

description: This dataset provides seedling density and site characteristics for 131 plots in Whiskeytown National Recreation Area in California, USA. Site characteristics include modeled seed availability and terrain indices calculated using a 1 meter resolution digital elevation model (DEM).
DOI: 10.5281/zenodo.3350914
title: GCTB SBayesR shrunk sparse linkage disequilibrium matrices for HM3 variants, summary statistics and predictors generated from "Improved polygenic prediction by Bayesian multiple regression on summary statistics" by Lloyd-Jones, Zeng et al. 2019.

description: GCTB LD matrices and results for HapMap 3 variants and 2.8M variants, which were used for simulation, cross-validation and across biobank analyses in the manuscript "Improved polygenic prediction by Bayesian multiple regression on summary statistics" by Lloyd-Jones, Zeng et al. 2019. Unzip and see README for further details.
DOI: 10.5281/zenodo.3416364
title: Simulated read data analysed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph"

description: Simulated read data analyzed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph". <strong>1) Human sequence data</strong> <strong>HO_chr11_50bp_sliding_window*fq.gz:</strong><br> All possible 50 bp reads overlapping chromosome 11 SNPs in the Human Origins dataset. Files with the word "alternate" in their filename carry the alternate allele, otherwise, they carry the reference allele. Deamination has been added into these simulated reads using gargammel (Renaud 2016) based on empirically estimated post-mortem damage in a dataset of 102 ancient genomes (Allentoft et al., 2015). <strong>2) microbial data</strong> <strong>simulation_*_s.fq.gz:</strong><br> Simulated microbial read data from a set of microbial reference genomes identified in the ancient Clovis genome (Rasmussen 2014), using gargammel.
DOI: 10.5281/zenodo.4715681
title: AAU Visual Rain Dataset (VIRADA)

description: The AAU VIRADA dataset contains a total of 215 hours of surveillance video from two different locations in Aalborg, Denmark. The purpose of the dataset is to enable the use of surveillance cameras as surrogate rain gauges. The ground truth precipitation data comes from two disparate sources: 1) mechanical, tipping-bucket rain gauges and 2), an advanced laser disdrometer. The footage from the first location, Crossing1, is split into a training (trn) and a validation (val) split. The footage from the second location, Crossing2, is used entirely for testing. More details on the setup is found in the CVPR Workshop paper: Haurum, Joakim Bruslund, Chris Holmberg Bahnsen, and Thomas B. Moeslund. "Is it Raining Outside? Detection of Rainfall using General-Purpose Surveillance Cameras." <em>2019 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)</em>. IEEE, 2019.
DOI: 10.5281/zenodo.7687095
title: Economic impacts of tropical cyclone-induced multiple hazards in China

description: The data and codes will be deposited in a repository that is appropriate for my scientific domain and that it is interoperable and reusable.
DOI: 10.6073/pasta/81c6c76f4fe22434a20aa8c00f2d4ad1
title: Time series of high-frequency sensor data measuring water temperature, dissolved oxygen, pressure, conductivity, specific conductance, total dissolved solids, chlorophyll a, phycocyanin, and fluorescent dissolved organic matter at discrete depths in Falling Creek Reservoir, Virginia, USA in 2018-2021

description: Depth profiles of water temperature on 1m intervals from 0.1 to 9 m depth; dissolved oxygen at 5 and 9 m depth; pressure at 9 m depth; and temperature, dissolved oxygen, conductivity, specific conductance, chlorophyll a, phycocyanin, total dissolved solids, fluorescent dissolved organic matter, and pressure at ~1.6 m depth were collected with a suite of high-frequency sensors at Falling Creek Reservoir (Vinton, Virginia, USA) on the 10-minute scale in 2018-2021. Falling Creek Reservoir is owned and managed by the Western Virginia Water Authority as a primary drinking water source for Roanoke, Virginia. This data product consists of one dataset compiled from water temperature data measured at multiple depths by thermistors, two dissolved oxygen sensors at multiple depths, pressure measured at one depth, and a YSI EXO2 sonde that measures temperature, dissolved oxygen, pressure, conductivity, specific conductance, chlorophyll a, phycocyanin, total dissolved solids, and fluorescent dissolved organic matter, at one depth, all measured at the deepest site of the reservoir adjacent to the dam.
DOI: 10.6084/m9.figshare.23946981
title: Supplementary Material for: Intravitreal triamcinolone acetonide for diabetic macular edema and macular edema secondary to retinal vein occlusion: a meta-analysis

description: Background: The comparative safety and efficacy of different doses of intravitreal triamcinolone acetonide (IVTA) for diabetic macular edema (DME) and macular edema (ME) secondary to retinal vein occlusion (RVO) is unclear. Objectives: This meta-analysis aimed to compare the safety and efficacy of different doses of IVTA in this setting. Methods: A systematic literature search for randomized clinical trials (RCTs) was conducted on Cochrane Library, Ovid MEDLINE and EMBASE from January 2005 to May 2022. Studies reporting on patients with DME or ME secondary to RVO that received treatment with different doses of IVTA. A random effects meta-analysis was performed. Cochrane’s risk of bias tool 2 was used to assess the risk of bias and grading of recommendations, assessment, development and evaluation (GRADE) guidelines were used to assess certainty of evidence. Results: Five RCTs reporting on 1,041 eyes at baseline were included in this meta-analysis. In eyes with ME secondary to RVO, high dose (4 mg) IVTA achieved a significantly better change in best-corrected visual acuity (WMD=-4.75 ETDRS letters, 95%CI=[-7.73, -1.78], p=.002) and reduction in retinal thickness (WMD=-93.02 µm, 95%CI=[-153.23, -32.82], p=.002) at months 4-6 compared to low dose (1-2 mg) IVTA. However, high dose IVTA had a higher risk of intraocular pressure (IOP)-related adverse events (RR=2.99, 95%CI=[1.05, 8.50], p=.04) and cataract surgery (RR=5.67, 95%CI=[3.09, 10.41], p&lt;.00001) than low dose IVTA in eyes with ME secondary to RVO. These efficacy and safety differences in high dose and low dose IVTA were not observed in DME eyes. Conclusions: The RCT evidence in this setting is limited. High dose IVTA achieved greater improvements in visual acuity and reductions in retinal thickness than low dose IVTA at months 4-6. However, high dose IVTA had a less favourable safety profile than low dose IVTA. The significance of these outcomes was based on patients with ME secondary to RVO, but not DME.
DOI: 10.6084/m9.figshare.24009057
title: Supplementary Material for: PLASMA FATTY ACID BIOMARKERS OF DAIRY CONSUMPTION ARE ASSOCIATED WITH SEX-DEPENDENT EFFECTS ON METABOLIC SYNDROME COMPONENTS IN MEXICAN ADOLESCENTS

description: Introduction: During adolescence, dairy product intake has shown conflicting associations with Metabolic Syndrome (MetS) components, which are risk factors for cardiovascular disease. Objective: This study aims to investigate the association between plasma fatty acids (FAs) C15:0, C17:0 and t-C16:1n-7, as biomarkers of dairy intake, with MetS and its components in Mexican adolescents. Methods: A sample of 311 participants from the ELEMENT cohort were included in this cross-sectional analysis. FA concentrations were measured in plasma, as a percentage of total FA. We used quantile regression models stratified by sex to evaluate the association between FA quantiles and MetS components, adjusting for age, socioeconomic status, sedentary behavior, BMI z-score, pubertal status, and energy intake. Results: We found significant associations between dairy biomarkers and the median of MetS variables. In females, t-C16:1n-7 was associated with a decrease of 2.97 cm in WC (Q4 vs Q1; 95% CI: -5.79, -0.16). In males, C15:0 was associated with an increase of 5.84 mm/Hg in SBP (Q4 vs Q1; CI: 1.82, 9.85). For HDL-C we observed opposite associations by sex. C15:0 in males was associated with decreased HDL-C (Q3 vs Q1: β= -4.23; 95% CI: -7.98, -0.48), while in females C15:0 and t-C16:1n-7 were associated with increased HDL-C (Q3 vs Q1: β= 4.75; 95% CI: 0.68, 8.82 and Q4 vs Q1: β=6.54; 95% CI: 2.01, 11.07), respectively. Additionally, in both sexes different levels of C15:0, C17:0, and t-C16:1n-7 were associated with increased triglycerides (TG). Conclusions: Our results suggest that adolescent dairy intake may be associated in different directions with MetS components, and that associations are sex-dependent.
DOI: 10.6084/m9.figshare.24024444
title: Supplementary Material for: Diverging Trends in Incidence of Spontaneous Intracerebral Hemorrhage in Sweden 2010–2019: An Observational Study from the Swedish Stroke Register (Riksstroke)

description: Introduction: Whereas ischemic stroke incidence has decreased in Sweden over the past decade, trends in spontaneous intracerebral hemorrhage (ICH) incidence are less well delineated. In this time period, there has been a dramatic increase in use of oral anticoagulants (OAC). The aim of our study was to investigate incidence trends in spontaneous first-ever ICH in Sweden between 2010 and 2019 with focus on non-OAC-associated and OAC-associated ICH. Methods: We included patients (≥18 years) with first-ever ICH registered in the hospital-based Swedish Stroke Register (Riksstroke) 2010 to 2019. Data were stratified by non-OAC and OAC ICH and analyzed for 2010–2012, 2013–2016 and 2017–2019. Incidence rates are shown as crude and age-specific per 100,000 person-years. Results: Between 2010 and 2019, 22,289 patients with first-ever ICH were registered; 18,325 (82.2%) patients with non-OAC ICH and 3,964 (17.8%) patients with OAC ICH. Annual crude incidence (per 100,000) of all first-ever ICH decreased by 10% from 29.5 (95% CI 28.8–30.3) to 26.7 (95% CI 26.0–27.3) between 2010–2012 and 2017–2019. The crude incidence rate of non-OAC ICH decreased by 20% from 25.7 (95% CI 25.0–26.3) to 20.7 (95% CI 20.1–21.2) whereas OAC ICH increased by 56% from 3.86 (95% CI 3.61–4.12) to 6.01 (95% CI 5.70–6.32). The proportion of OAC ICH of all first-ever ICH increased between 2010–2012 and 2017–2019 from 13.1% to 22.5% (p&lt;0.001). Proportional changes were largest in the age group ≥85 years with a decrease in non-OAC ICH by 32% from 155 (95% CI 146–164) to 106 (95% CI 98.6–113) and an increase in OAC ICH by 155% from 25.7 (95% CI 22.1–29.4) to 65.5 (95% CI 59.9–71.2). Conclusion: Incidence of first-ever ICH in Sweden decreased by 10% between 2010 and 2019. We found diverging trends with a 20% decrease in non-OAC-associated ICH and a 56% increase in OAC-associated ICH. Further research on ICH epidemiology, analyzing non-OAC and OAC-associated ICH separately, is needed to follow up these diverging trends including underlying risk factors.
DOI: 10.6084/m9.figshare.24070944
title: Supplementary Material for: Prodromal dementia with Lewy bodies: a case series of the 3 prodromal types from clinical practice

description: Prodromal dementia with Lewy bodies (DLB) refers to a state prior to the onset of dementia with clinical signs or symptoms that may indicate the future development of DLB. Prodromal symptoms can include not only cognitive deficits but also a mix of clinical features including sleep disorders, autonomic dysfunction, and neuro-psychiatric disturbances. While diagnostic criteria for the subtypes of prodromal DLB were recently published, they are largely for use in the research setting. However, these diagnostic criteria have important implications for clinical practice. Helping clinicians to recognize prodromal stages of DLB can lead to identifying deficits sooner, improved patient and family counseling, and advance care planning. This case series presents examples of the 3 subtypes of prodromal DLB – mild cognitive impairment-onset, delirium-onset, and psychiatric-onset – to help clinicians identify individuals who may be on a trajectory to develop DLB.
DOI: 10.17632/c48syxjdzn.1
title: Data for Technical Performance Metrics of a Security Operations Center

description: This repository contains the source code and the full list of metrics used in a research paper "Technical Performance Metrics of a Security Operations Center".
DOI: 10.18728/558.0
title: Lake Tegel Phytoplankton 1987 - 2006
DOI: 10.24381/cds.6edf04e0
title: Global sea level change indicators from 1950 to 2050 derived from reanalysis and high resolution CMIP6 climate projections
DOI: 10.5281/zenodo.7691966
title: Data from: Functionally analogous body- and animacy-responsive areas in the dog (Canis familiaris) and human occipito-temporal lobe

description: Comparing the neural correlates of socio-cognitive skills across species provides insights into the evolution of the social brain and has revealed face- and body-sensitive regions in the primate temporal lobe. Although from a different lineage, dogs share convergent visuo-cognitive skills with humans and a temporal lobe which evolved independently in carnivores. We investigated the neural correlates of face and body perception in dogs (<em>N </em>= 15) and humans (<em>N</em> = 40) using functional MRI. Combining univariate and multivariate analysis approaches, we found functionally analogous occipito-temporal regions involved in the perception of animate entities and bodies in both species and face-sensitive regions in humans. Though unpredicted, we also observed neural representations of faces compared to inanimate objects, and dog compared to human bodies in dog olfactory regions. These findings shed light on the evolutionary foundations of human and dog social cognition and the predominant role of the temporal lobe. This data set contains: raw functional neuroimaging data of <em>N</em> = 15 dogs structural scans of the same dogs incl. brain masks & skull-stripped versions files containing the condition names, onsets and durations for each dog and task run files containing the motion regressors incl. motion scrubbing for each dog and task run Data of the comparative human neuroimaging sample will be made available by the first author upon reasonable request. Please also visit our Open Science Framework project site for detailed sample descriptives and group-level imaging data of both species (https://osf.io/kzcs2/).
description: This project was supported by the Austrian Science Fund (FWF): W1262-B29 and by the Vienna Science and Technology Fund (WWTF), the City of Vienna and ithuba Capital AG [10.47379/CS18012], and the Messerli Foundation (Sörenberg, Switzerland). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
DOI: 10.5281/zenodo.8296864
title: Dataset for "Geospatial segmentation of high-resolution photovoltaic production maps for Switzerland", Frontiers Energy

description: ## Notes<br> 1. The following tif files contain the Plain-Of-Array irradiation on south-facing solar panels with different tilts {20,30,40,50,60,70} and during different seasons {summer,winter}.<br> 2. The file pattern is poa\_{season}\_tilt\_{tilt}.tif<br> 3. Read Section 2.2 of the research article for details on how these files were created. <br> 4. These values are POA and need to be converted to energy production via an efficiency factor. This factor was chosen to be a fixed value of 20\% as noted in Section 2.2 of the research article.
DOI: 10.6084/m9.figshare.24015129
title: Supplementary Material for: SALL4 phenotype in four generations of one family: An interplay of the upper limb, kidneys, and the pituitary

description: Introduction: The SALL4 gene encodes a transcription factor that is essential for early embryonic cellular differentiation of the epiblast and primitive endoderm. It is required for the development of neural tissue, kidney, heart, and limbs. Pathogenic SALL4 variants cause Duane-radial ray syndrome (Okihiro syndrome), acro-renal-ocular syndrome and Holt-Oram syndrome. We report a family with vertical transmission of a SALL4 pathogenic variant leading to radial hypoplasia and kidney dystopia in several generations with additional growth hormone deficiency (GHD) in the proband. Case Presentation: Our male proband was born at the 39th week of gestation. He was born small for gestational age (SGA; birth weight 2550 g, -2.2 SDS; length 47 cm, -2.0 SDS). He had bilateral asymmetrical radial ray malformation (consisting of radial hypoplasia, ulnar flexure, and bilateral aplasia of the thumb) and pelvic kidney dystopia, but no cardiac malformations, clubfoot, ocular coloboma or Duane anomaly. He was examined for progressive short stature at the age of 3.9 years, where his IGF-1 was 68 ug/l (-1.0 SD), and growth hormone (GH) after stimulation 6.2 ug/l. Other pituitary hormones were normal. A brain CT revealed normal morphology of the cerebral midline and the pituitary. He had a dental anomaly – a central mandibular ectopic canine. MRI could not be done due to the presence of metal after multiple corrective plastic surgeries of his hands. His mother’s and father’s heights are 152.3 cm (-2.4 SD) and 177.8 cm (-0.4 SD) respectively. His father has a milder malformation of the forearm. The affected paternal grandfather (height 164 cm; -2.3 SD) has a radial ray defect with missing opposition of the thumb. The family reports a similar phenotype of radial dysplasia in the paternal grandfather’s mother. The proband started GH therapy at age 6.5 years when his height was 109 cm (-2.8 SDS) and he experienced catch-up growth as expected in GHD. Puberty started spontaneously at the age of 12.5 years. At age 13 his height was 158.7 cm (-0.2 SDS). Whole exome sequencing revealed a nonsense variant in the SALL4 gene c.1717C&gt;T (p.Arg573Ter) in the proband, his father, and paternal grandfather. Conclusion: This is the first observation of a patient with a congenital upper limb defect due to a pathogenic SALL4 variant who has isolated GHD with no apparent cerebral or facial midline anomaly, and has been successfully treated with growth hormone.
DOI: 10.6084/m9.figshare.24071094
title: Supplementary Material for: Complete Response on Larotrectinib in NTRK2-Fusion positive NSCLC

description: In patients with non-small cell lung cancer (NSCLC) harboring a fusion of the neurotrophic receptor kinase (NTRK) gene 1 or 3 treatment with tropomyosine kinase (TRK) inhibitors have shown promising results, however so far no data on efficacy of these agents in patients with NSCLC and NTRK2 fusion is available. We present a case of a female patient with NTRK2 positive NSCLC with a complete ongoing response on therapy with larotrectinib, suggesting efficacy of first-generation TRK inhibitors also in NTRK2 positive NSCLC.