cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5519/qd.lczrha78
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (40 records)
DOI: 10.17632/pk6fnvwgg7.1
title: WaterAlignment: Identification of displaced water molecules in molecular docking using Jonker and Volgenant shortest path augmentation for linear assignment

description: The dynamics of individual water molecules has a strong effect on the energetics of biochemical interactions, such as peptide–protein binding. Existing software are able to predict the location of water molecules at the interface between a macromolecule and a ligand in a single state or at a particular time point. The program described in this article compares explicit solvent molecules from two different states within a given volume of space; for example between a free protein vs. the same protein with a ligand bound. This comparison creates a unique one-to-one matching between waters from the two states utilizing the Jonker and Volgenant algorithm for linear assignment. Matchings are deterministic and minimize the sum of the distance between matched pairs. Explicit solvent ligand docking can utilize this matching to understand how ligand binding affects the energy of interface waters. This algorithm can also be used to compare predicted water molecules to those seen in X-ray crystallography, or to compare two different methods of solvent prediction.
DOI: 10.17632/r3vwtzgrmj.1
title: Data for: Visual Statistical Learning and Orthographic Awareness in Chinese Children with and without Developmental Dyslexia

description: The data on the association between statistical learning and orthographic awareness in Chinese children with and without dyslexia.
DOI: 10.17632/ttwb4b6kmr.2
title: К проблеме реализации компетентностного подхода в высшем образовании

description: На современном этапе интеграция российской системы высшего образования в Болонский процесс актуализирует проблему изменения образовательной парадигмы. В данной статье рассматриваются основные лингводидактические задачи, направленные на формирование меж­культурной, иноязычной и переводческой компетенций у студентов. Применение компетентностного подхода в преподавании иностранных языков является непременным условием обеспечения конкурентоспособности и востребованности выпускников российских вузов на совре­менном рынке труда. Автор анализирует современные методы организации обучения, обозначает круг нерешенных проблем отечественного образования и рассматривает способы их преодоления.
DOI: 10.17632/y2b5zgdjfs.1
title: Data for: ON A MEASUREMENT APPROACH TO SUPPORT EVALUATION OF THERMAL SCATTERING LAW DATA

description: The manuscript shows measured data and related discussion.
DOI: 10.5281/zenodo.2553042
title: Supplementary material for the paper "DS Andromedae, A Detached Eclipsing Double-Lined Spectroscopic Binary in the Galactic Cluster NGC 752

description: Supplementary material supporting the paper "DS Andromedae: A Detached Eclipsing Double-Lined Spectroscopic Binary in the Galactic Cluster NGC 752" by E. F. Milone, S. J. Schiller, Th. Mellergaard Amby, and S. Frandsen. It includes: A Read-me file in three formats (docx, rtf, pdf); Unabridged Section 3 with extended modeling details (pdf); Extended spreadsheet version of Table 3 of adjusted parameters (pdf); Extended spreadsheet version of Table 8 of absolute parameters (pdf); and Complete Table 15 of photometric data (txt): and a sample DC input file (for Model 41, used in the DS And modeling) in dat format.
DOI: 10.17632/9x324z2x3b.1
title: Listening to real-world sounds: fMRI data for analyzing connectivity networks

description: This dataset contains auditory fMRI scans and T1-weighted anatomical scans acquired under eyes-closed and -open conditions. In each condition, the subject was presented twelve different sound clips, including human voices and animal vocalizations. The dataset can be used to assess reproducible brain activity and connectivity networks under natural sound stimulation. It also allows for investigation of changes in fMRI responses between eyes-closed and eyes-open conditions, between human voices and animal vocalizations, as well as between the different sounds during auditory stimulation.
DOI: 10.17632/ycmpsnv5yx.1
title: SpM: Sparse modeling tool for analytic continuation of imaginary-time Green's function

description: We present SpM, a sparse modeling tool for the analytic continuation of imaginary-time Green’s function, licensed under GNU General Public License version 3. In quantum Monte Carlo simulation, dynamic physical quantities such as single-particle and magnetic excitation spectra can be obtained by applying analytic continuation to imaginary-time data. However, analytic continuation is an ill-conditioned inverse problem and thus sensitive to noise and statistical errors. SpM provides stable analytic continuation against noise by means of a modern regularization technique, which automatically selects bases that contain relevant information unaffected by noise. This paper details the use of this program and shows some applications.
DOI: 10.5281/zenodo.2553041
title: Supplementary material for the paper "DS Andromedae, A Detached Eclipsing Double-Lined Spectroscopic Binary in the Galactic Cluster NGC 752

description: Supplementary material supporting the paper "DS Andromedae: A Detached Eclipsing Double-Lined Spectroscopic Binary in the Galactic Cluster NGC 752" by E. F. Milone, S. J. Schiller, Th. Mellergaard Amby, and S. Frandsen. It includes: A Read-me file in three formats (docx, rtf, pdf); Unabridged Section 3 with extended modeling details (pdf); Extended spreadsheet version of Table 3 of adjusted parameters (pdf); Extended spreadsheet version of Table 8 of absolute parameters (pdf); and Complete Table 15 of photometric data (txt): and a sample DC input file (for Model 41, used in the DS And modeling) in dat format.
DOI: 10.17632/jkbpgpr4d4.1
title: INTERNATIONAL SCIENTIFIC-PRACTICAL CONFERENCE «I FIRSOVSKY READINGS. MODERN PROBLEMS OF INTERCULTURAL COMMUNICATION»

description: The Firsova's Readings are held in memory of the outstanding Russian Hispanist N.М. Firsova. Under the auspices of the Firsova's Readings, students and all those who were inspired by the scientific work of N.M. Firsova. Nowadays, most nations of the world live in a period of serious change. As is known, changes in social culture are reflected in the system of language and the ways of its functioning. Domestic linguistics is increasingly feeling the need for a more specific clarification of changes occurring in the language system and in colloquial speech. This conference was held to discuss the latest achievements in linguistics, intercultural communication, comparative linguistics, sociolinguistic research and methods of teaching foreign languages. This is important both for the development of science itself and for the demand of modern practice.
DOI: 10.5258/soton/d1032
title: Data Set for Wirelessly powered and remotely controlled valve-array for highly multiplexed analytical assay automation on a centrifugal microfluidic platform

description: Data supporting the paper Saraí M. Torres Delgadoa, David J. Kinahan, Lourdes Albina Nirupa Julius, Adam Mallette, David Sáenz Ardila, Rohit Mishra, Celina M. Miyazaki, Jan G. Korvink, Jens Ducrée, Dario Mager 2018 Wirelessly powered and remotely controlled valve-array for highly multiplexed analytical assay automation on a centrifugal microfluidic platform Biosensors and Bioelectronics https://doi.org/10.1016/j.bios.2018.03.012
DOI: 10.5258/soton/d1034
title: Dataset for Haptic enhancement of speech-in-noise performance in cochlear implant users

description: Dataset giving percentage of words in noise identified with and without vibro-tactile stimulation before and after a short training regime.Fletcher, Mark ; Hadeedi, Amatullah ; Goehring, Tobias ; Mills, Sean. / Haptic enhancement of speech-in-noise performance in cochlear implant users. In: Scientific Reports. 2019
DOI: 10.17632/nybht7s9hp.1
title: An experimental test of the solemn oath in eliciting sincere preferences

description: dataset for "an experimental test of the solemn oath..."
DOI: 10.17632/wzkwr333vv.1
title: SUMO2/3 ChIP-seq OE19, MCF10A cells
DOI: 10.5281/zenodo.3355709
title: Wikimedia Commons photos by prominent users and their usage across the web

description: Extract from the Wikimedia Commons database containing a list of users selected by the community for having uploaded high quality photos; list of 310k photos of theirs and of the subset of 59k photos sent to Infringement.Report for matching; list of domains whose matches were ignored as not useful for copyleft license enforcement.
DOI: 10.17632/bvppchnfm3.1
title: Data for: Profiling 58 Compounds Including Cosmetic-Relevant Chemicals Using ToxRefDB and ToxCast

description: Supplemental Files 2 (CosmeticProfilePaper_R1_update.html) and 3 (SuppFile3_tr_all.RData) from the manuscript are provided here. Supplemental File 2 is an html Rmarkdown file that shows all of the code in the manuscript for analysis and figure generation. Supplemental File 2 will open in a browser window. Supplemental File 3 is all of the ToxRefDB data used in the manuscript as an R data file (read by R).
DOI: 10.17632/kcj8jchmwc.1
title: Data for: Numerical Simulation of Acoustic Fields in Formation Generated by Linear Phased Array Acoustic Transmitters During Logging While Drilling
DOI: 10.5066/p9udq0u0
title: Louisiana Barrier Island Comprehensive Monitoring Program - 2008 to 2016 habitat change, Modern Delta Region
DOI: 10.5281/zenodo.3356733
title: Experimental Results of the UNIC OC4 FED4FIRE+ Project

description: This repository contains the detailed experimental results of the Unikernel-based CDNs for 5G Networks (UNIC) project. This work has received funding from the EU's Horizon 2020 research and innovation programme through the 4th open call scheme of the FED4FIRE+ (grant agr. no 732638).
DOI: 10.5281/zenodo.3356734
title: Experimental Results of the UNIC OC4 FED4FIRE+ Project

description: This repository contains the detailed experimental results of the Unikernel-based CDNs for 5G Networks (UNIC) project. This work has received funding from the EU's Horizon 2020 research and innovation programme through the 4th open call scheme of the FED4FIRE+ (grant agr. no 732638).
DOI: 10.17632/pw9ndwc7gw.1
title: Data for: Research on the fractal behavior of surface morphology by machining

description: We measured groups of specimens made from seven manufacturing methods using a stylus profilometer to obtain the arithmetical mean roughness (AMR) and other statistics of the surface profiles. Using the structure function method (SFM), we evaluated the fractal features of all 27 of the specimen surfaces and investigated the relationship between the fractal dimension (FD) and AMR.
DOI: 10.17632/cvwfmjmkvp.1
title: Data for: The latitudinal gradient of shell ornament – a case study from Changhsingian (Late Permian) brachiopods
DOI: 10.17632/v5h2jk6z6x.1
title: Data for: Office concepts: A scoping review

description: These two documents are the supplementary materials for the study "Office concepts: A scoping review". The first document consists of the methodological details describing the charting done in the review. The second document consists of the raw data from the included studies in the review.
DOI: 10.5281/zenodo.3860592
title: Data sets for Perspective: SARS-CoV-2's potential mechanism of regulating cellular responses through depletion of specific host miRNAs

description: Using a bioinformatic analysis of human miRNA potential interactions with the SARS-CoV-2’s genome, we examined the potential miRNA target sites in 7 coronavirus genomes that include SARS-CoV-2, MERS-CoV, SARS-CoV, and 4 non-pathogenic coronaviruses. (<strong>Data Set 1</strong>). <em>Our approach was to examine and compare 3 pathogenic and 4 non-pathogenic strains of HCoVs. The HCoVs' RNA genomes of pathogenic strains were SARS-CoV-2 (NC_045512.2), SARS-CoV (NC_004718.3), MERS-CoV (NC_019843.3). The non-pathogenic strains were HCoV-OC43 (KU131570.1), HCoV-229E (NC_002645.1), HCoV-HKU1 (KF686346.1), and HCoV-NL63 (NC_005831.2). These coronaviruses were tested against the set of 896 confident mature human miRNA sequences that were obtained from the miRBbase v2.21 using the RNA22 v2 microRNA target discovery tool web-server. In order to reduce the false discovery rate of the MTS predictions, the most strict parameters were applied to the default computation workflow using a specificity of 92% versus a sensitivity of 22%.</em> <em>In <strong>Data set 2</strong>, using the miRDIP database with only top 1% of the most probable targets considered, we analyzed the potential targets of miRNA that could be bound to either the pathogenic, the non-pathogenic or both groups of HCoVs. </em> In <strong>Data set 3</strong>, using miRNAFold webserver we identified 10 pre-miRNA sequences in the <em>SARS-CoV-2</em> RNA sequence that could potentially enter the human RNAi pathway. The graphical summary of our working hypothesis is provided in the<strong> graphical abstract</strong>.
DOI: 10.5061/dryad.jq05h33/1
title: Dryad Item 10.5061/DRYAD.JQ05H33/1

description: (:tba)
DOI: 10.5061/dryad.jq05h33/2
title: Dryad Item 10.5061/DRYAD.JQ05H33/2

description: (:tba)
DOI: 10.5281/zenodo.3860591
title: Data sets for Perspective: SARS-CoV-2's potential mechanism of regulating cellular responses through depletion of specific host miRNAs

description: Using a bioinformatic analysis of human miRNA potential interactions with the SARS-CoV-2’s genome, we examined the potential miRNA target sites in 7 coronavirus genomes that include SARS-CoV-2, MERS-CoV, SARS-CoV, and 4 non-pathogenic coronaviruses. (<strong>Data Set 1</strong>). <em>Our approach was to examine and compare 3 pathogenic and 4 non-pathogenic strains of HCoVs. The HCoVs' RNA genomes of pathogenic strains were SARS-CoV-2 (NC_045512.2), SARS-CoV (NC_004718.3), MERS-CoV (NC_019843.3). The non-pathogenic strains were HCoV-OC43 (KU131570.1), HCoV-229E (NC_002645.1), HCoV-HKU1 (KF686346.1), and HCoV-NL63 (NC_005831.2). These coronaviruses were tested against the set of 896 confident mature human miRNA sequences that were obtained from the miRBbase v2.21 using the RNA22 v2 microRNA target discovery tool web-server. In order to reduce the false discovery rate of the MTS predictions, the most strict parameters were applied to the default computation workflow using a specificity of 92% versus a sensitivity of 22%.</em> <em>In <strong>Data set 2</strong>, using the miRDIP database with only top 1% of the most probable targets considered, we analyzed the potential targets of miRNA that could be bound to either the pathogenic, the non-pathogenic or both groups of HCoVs. </em> In <strong>Data set 3</strong>, using miRNAFold webserver we identified 10 pre-miRNA sequences in the <em>SARS-CoV-2</em> RNA sequence that could potentially enter the human RNAi pathway. The graphical summary of our working hypothesis is provided in the<strong> graphical abstract</strong>.
DOI: 10.5061/dryad.kp32qr6/1
title: Dryad Item 10.5061/DRYAD.KP32QR6/1

description: (:tba)
DOI: 10.5519/qd.mkpj6xy8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1968 records)
DOI: 10.15139/s3/flaww8
title: Monmouth University New Jersey Poll, Number 181

description: This survey was conducted among likely voters in New Jersey’s 7th Congressional District.
DOI: 10.5061/dryad.3185h66/1
title: Dryad Item 10.5061/DRYAD.3185H66/1

description: (:tba)
DOI: 10.5281/zenodo.3356792
title: Social websites reviews and ratings of Dublin restaurants situated across 65 locations

description: The dataset contains user reviews and ratings of restaurants situated across 65 locations in Dublin along with other features such as cuisine, price range etc. which are as follows. <strong>Restaurant ID</strong>: Each ID represents a restaurant which has been given a unique ID to easily identify them. There are 211 restaurants in total. <strong>Location ID</strong>: The locality in which each restaurant is situated have been given ID’s. 65 such unique locations are present in the data. <strong>Review</strong>: This field represents the user reviews for each restaurant. Reviews have been cleaned to remove punctuations, emojis and special characters. <br> <strong>Cuisine</strong>: Represents the cuisine type for each restaurant. <strong>Price</strong> <strong>Range</strong>: The average price for dining in the restaurant. It has 3 categories: €30 and under | €31 to €50 | €51 and over <strong>Food</strong> <strong>Rating</strong>: User given rating between 1 and 5 for the quality of food in the restaurant. <strong>Service Rating</strong>: User given rating between 1 and 5 for the quality of service in the restaurant. <strong>Ambience Rating</strong>: User given rating between 1 and 5 for the ambience in the restaurant. <strong>Overall Rating</strong>: User given rating between 1 and 5 for the restaurant in total. <strong>Restaurant Rating</strong>: The average rating of each restaurant based on general opinion. <strong>Review Sentiment</strong>: Overall sentiment of the user review i.e. either Positive or Negative. <strong>Total Number of Rows</strong>: 10000 <strong>Number of Rows for Positive Sentiment</strong>: 5000 <strong>Number of Rows for Negative Sentiment</strong>: 5000 <strong>Number of Unique Restaurants</strong>: 211 <strong>Number of Unique Locations</strong>: 65 <strong>Number of Unique Cuisines</strong>: 43
DOI: 10.5281/zenodo.3356793
title: Social websites reviews and ratings of Dublin restaurants situated across 65 locations

description: The dataset contains user reviews and ratings of restaurants situated across 65 locations in Dublin along with other features such as cuisine, price range etc. which are as follows. <strong>Restaurant ID</strong>: Each ID represents a restaurant which has been given a unique ID to easily identify them. There are 211 restaurants in total. <strong>Location ID</strong>: The locality in which each restaurant is situated have been given ID’s. 65 such unique locations are present in the data. <strong>Review</strong>: This field represents the user reviews for each restaurant. Reviews have been cleaned to remove punctuations, emojis and special characters. <br> <strong>Cuisine</strong>: Represents the cuisine type for each restaurant. <strong>Price</strong> <strong>Range</strong>: The average price for dining in the restaurant. It has 3 categories: €30 and under | €31 to €50 | €51 and over <strong>Food</strong> <strong>Rating</strong>: User given rating between 1 and 5 for the quality of food in the restaurant. <strong>Service Rating</strong>: User given rating between 1 and 5 for the quality of service in the restaurant. <strong>Ambience Rating</strong>: User given rating between 1 and 5 for the ambience in the restaurant. <strong>Overall Rating</strong>: User given rating between 1 and 5 for the restaurant in total. <strong>Restaurant Rating</strong>: The average rating of each restaurant based on general opinion. <strong>Review Sentiment</strong>: Overall sentiment of the user review i.e. either Positive or Negative. <strong>Total Number of Rows</strong>: 10000 <strong>Number of Rows for Positive Sentiment</strong>: 5000 <strong>Number of Rows for Negative Sentiment</strong>: 5000 <strong>Number of Unique Restaurants</strong>: 211 <strong>Number of Unique Locations</strong>: 65 <strong>Number of Unique Cuisines</strong>: 43
DOI: 10.17632/56nfng8z7b.1
title: Data for: The Sea of Marmara during Marine Isotope Stages 5 and 6

description: Supplementary data for Çağatay et al. (2019) published in JQSR
DOI: 10.17632/d9t88zw2sv.1
title: Data for: Innovation in Impact Assessment Theory and Practice: What does our bibliography tell us?

description: Supporting materials featured as appendices due to space limitations.
DOI: 10.17632/mw9775njrx.1
title: Data for: The Sea of Marmara during Marine Isotope Stages 5 and 6

description: Supplementary Figure and Data of Çağatay et al (2019), The Sea of Marmara during Marine Isotope Stages 5 and 6, submitted to JQSR. It includes data sets and a figüre related to the chronology of two cores from the Sea of Marmara, Turkey. List of items: Supplementary Fig. S1. Age-depth plot for cores MRS-CS27 (A) and MRS-CS18 (B), generated from correlation of µ-XRF Ca (x 1000 cps) with Greenland Interstadials (GI) of NGRIP ice core oxygen isotope data (Svensson et al., 2008), tephrochronology, and the onset and end of Holocene Marmara sapropel for core MRS-CS27 (MSAP-1; Çağatay et al., 2015). For detailed description see text of sections 3.4.5 and 4.2.1 and Supplementary Data, Table 1). Supplementary Table S1. List of age data used for age-depth modelling for core MRS-CS27. Supplementary Table S2. List of age data used for age-depth modelling for core MRS-CS18.
DOI: 10.5281/zenodo.3355599
title: COOS-7 (Cells Out Of Sample 7-Class)

description: This repository contains the preliminary preprint version (v0.2) of the COOS-7 dataset (see preprint at https://arxiv.org/abs/1906.07282). COOS-7 contains 132,209 crops of mouse cells, stratified into a training dataset, and four test datasets representing increasing degrees of covariate shift from the training dataset. In the classification task associated with COOS-7, the aim is to build a classifier robust to covariate shifts typically seen in microscopy. Methods developers must train and optimize machine learning models using the training dataset exclusively, and evaluate performance on each of the four test datasets. <strong>Important:</strong> This version contains preliminary data only. Depending on the usage of these images, you may need to re-run your method once the full version of the dataset is released. <strong>Each HDF5 file contains two dictionaries:</strong><br> 'data' - contains all of the images in a four-dimensional array (images, channels, height, width)<br> 'labels' - contains the labels for each image, in the same order as the images in 'data' The value for labels indicates the class of the image, which can be one of seven values:<br> 0 - Endoplasmic Reticulum (ER)<br> 1 - Inner Mitochondrial Membrane (IMM)<br> 2 - Golgi<br> 3 - Peroxisomes<br> 4 - Early Endosome<br> 5 - Cytosol<br> 6 - Nuclear Envelope The h5py package is required to read these files with Python. We provide a Python script, unpackage_COOS.py, that will automatically save the archives as directories of tiff files, organized by class. The two channels for each image will be saved as separate images, with a suffix of "_protein.tif" and "_nucleus.tif", respectively. <strong>To run the unpackaging script, issue the command line argument:</strong><br> python unpackage_COOS.py [path of HDF5 file] [path of directory to save images to]<br> e.g. python unpackage_COOS.py ./COOS7_v0.2_training.hdf5 ./COOS7_v0.2_training_images/ <strong>Full information about the test sets and the images can be found at https://arxiv.org/abs/1906.07282.</strong>
DOI: 10.5063/f1sx6bh1
title: Winegrowing Regions of the World 2007

description: This digital atlas of the major winegrowing regions of the World delineates winegrape producing regions as provided by Oz Clark's (2007) . The shapefile comprises a total of 302 polygons distributed across 6 continents and its purpose is to develop spatially explicit analyses of winegrowing at a large or global scale (note that fine scale resolution analyses are not recommended based on this dataset given the resolution of the original maps). The map is not comprehensive, as it lacks regions developed after 2007 and some regions depicted only have marginal winegrape production (e.g., southeastern US, central Mexico, areas of Mongolia, north island of Japan).