cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11394312.v1
title: Supplementary Material for: Asymmetric Slow-Spike-Wave Patterns with Maximal Discharges Contralateral to MRI Lesions Predict Better Surgical Prognosis in Symptomatic Lennox-Gastaut Syndrome or Lennox-Gastaut Phenotypes

description: <b><i>Introduction:</i></b> Lennox-Gastaut syndrome (LGS) is a severe subtype of childhood-onset epileptic encephalopathy with drug-resistant and poor surgical prognosis. However, electroencephalogram (EEG) patterns of symptomatic LGS or LG phenotypes with structural brain lesions including focal abnormalities or asymmetric slow-spike-wave (SSW) patterns remain largely unknown. Due to the contradictory lateralization difference between MRI lesions and EEG pattern in symptomatic LGS or LG phenotypes, it is difficult to determine the precise lateralization of epileptic lesions, which is crucial to better surgical prognosis. This study is aim to ascertain the clinical characteristics of the EEG patterns, and its relationship with MRI lesions and to evaluate its prognostic value of surgical treatment in symptomatic LGS or LG phenotypes. <b><i>Methods:</i></b> Twenty-four symptomatic LGS cases with asymmetric EEG SSW patterns and contralaterally independent or contralaterally dominant MRI lesions were collected, and their clinical features were analyzed retrospectively. <b><i>Results:</i></b> In this cohort, most of lesions were perinatal or acquired during the first 6 months of life. The most common etiology was intracerebral hemorrhage. The LGS patients with both asymmetric SSW and focal sporadic epileptic waves (SEW) patterns showed the best surgical outcome with Engel class I level. Asymmetric SSW patterns with maximal discharges contralateral to MRI lesions were frequently observed in most of symptomatic LGS or LG phenotypes. Predominantly diffuse destructive lesions led to an attenuated voltage of ipsilateral scalp EEG producing an asymmetric SSW pattern in those patients with symptomatic LGS or LG phenotypes. <b><i>Conclusions:</i></b> Our study reveals a special SEW EEG pattern in symptomatic LG patients with asymmetric SSW and MRI lesions contralateral to the dominant EEG patterns. Contradictory lateralization difference between MRI and EEG probably arises from the relative voltage attenuation presenting in EEG ipsilateral to huge destructive lesions from early life. Our study suggests that the independent focal SEW activity remaining ipsilateral to the MRI lesion can potentially predict better surgical prognosis in symptomatic LGS or LG phenotypes.
DOI: 10.6084/m9.figshare.11393991
title: High-glass-transition-temperature hydrocarbon polymers produced through anionic polymerization of 1,2/1,1-diphenyl-1,3-butadiene and subsequent cyclization

description: The anionic polymerization of 1,2-diphenyl-1,3-butaidiene and 1,1-diphenyl-1,3-butaidiene is conducted and a heat-resistant hydrocarbon polymer is obtained through subsequent cyclization of precursors. The controllability of polymerization depends on the type of solvent and temperature. When polymerization is conducted in a cyclohexane (CHX)/tetrahydrofuran (THF) solvent at room temperature, 1,2-diphenyl-1,3-butaidiene undergoes anionic polymerization with n-BuLi to quantitatively afford polymers of well-controlled molecular weights and narrow molecular weight distributions. In THF at room temperature, 1,1-diphenyl-1,3-butaidiene undergoes anionic polymerization to high monomer conversion (84 wt %). These Poly(diphenyl-butadiene) precursors are then cyclized in the presence of trifluoromethanesulfonic acid (CF<sub>3</sub>SO<sub>3</sub>H). The resulting cyclized product reached a high Tg value (approximately 170–233 °C) similar to that of cyclic hydrocarbon polymers such as polycyclohexane (Tg = 231 °C).
DOI: 10.6084/m9.figshare.11393991.v1
title: High-glass-transition-temperature hydrocarbon polymers produced through anionic polymerization of 1,2/1,1-diphenyl-1,3-butadiene and subsequent cyclization

description: The anionic polymerization of 1,2-diphenyl-1,3-butaidiene and 1,1-diphenyl-1,3-butaidiene is conducted and a heat-resistant hydrocarbon polymer is obtained through subsequent cyclization of precursors. The controllability of polymerization depends on the type of solvent and temperature. When polymerization is conducted in a cyclohexane (CHX)/tetrahydrofuran (THF) solvent at room temperature, 1,2-diphenyl-1,3-butaidiene undergoes anionic polymerization with n-BuLi to quantitatively afford polymers of well-controlled molecular weights and narrow molecular weight distributions. In THF at room temperature, 1,1-diphenyl-1,3-butaidiene undergoes anionic polymerization to high monomer conversion (84 wt %). These Poly(diphenyl-butadiene) precursors are then cyclized in the presence of trifluoromethanesulfonic acid (CF<sub>3</sub>SO<sub>3</sub>H). The resulting cyclized product reached a high Tg value (approximately 170–233 °C) similar to that of cyclic hydrocarbon polymers such as polycyclohexane (Tg = 231 °C).
DOI: 10.6084/m9.figshare.12865586
title: Statistical properties of locally generated high frequency hiss

description: diffusion coefficients of electrons by high frequency hiss at L=3, 4, 5, 6
DOI: 10.6084/m9.figshare.12865586.v1
title: Statistical properties of locally generated high frequency hiss

description: diffusion coefficients of electrons by high frequency hiss at L=3, 4, 5, 6
DOI: 10.25398/rd.northumbria.12861113
title: Northumbria University RCUK OA Year 7

description: Northumbria University's report on usage of the RCUK Open Access block grant, and compliance with the RCUK Open Access policy. <br>Publication data was gathered from Northumbria Research Link, the University's Open Access research repository. Information about article processing charges is recorded through the year in the Jisc APC template. Further information on research funding was obtained through reports extracted from the Agresso finance system, and ResearchFish.
DOI: 10.25398/rd.northumbria.12861113.v1
title: Northumbria University RCUK OA Year 7

description: Northumbria University's report on usage of the RCUK Open Access block grant, and compliance with the RCUK Open Access policy. <br>Publication data was gathered from Northumbria Research Link, the University's Open Access research repository. Information about article processing charges is recorded through the year in the Jisc APC template. Further information on research funding was obtained through reports extracted from the Agresso finance system, and ResearchFish.
DOI: 10.6084/m9.figshare.11393931
title: Behavioural responses in a congested sea: an observational study on a coastal nest-guarding fish

description: The deleterious effects of anthropogenic noise on animal communication are nowadays recognised, not only in urban environments but also in terrestrial habitats and along coasts and in open waters. Yet, the assessment of short- and long-term exposure consequences of anthropogenic noise in marine organisms remains challenging, especially in fish and invertebrates. Males of the Mediterranean damselfish <i>Chromis chromis</i> vocalise and perform visual displays (multimodal communication) to attract mates. The frequency-range of courtship vocalisations overlaps with low-frequency noise generated by maritime activities, resulting in a reduced detection distance among conspecifics. We quantified the number of courtship-related visual displays performed by males living in areas with different levels of maritime traffic. We also tried to manipulate ambient noise in the field to test male short-term response to increased noise levels. Males living in busier areas (near to a harbour) performed significantly more visual displays than those living in less congested areas. When exposed to artificially-increased ambient noise level (playback of boat noise), males did not adjust the number of visual displays accordingly. Yet, we note how assessing the actual effect of maritime traffic in marine populations in their natural environments is particularly difficult, as the effects of boat noise cannot be easily disentangled from a variety of other intrinsic or environmental factors, discussed in the paper. We thus present suggestions to obtain more robust analyses of variations of courtship behaviours in territorial fishes. We hope this will facilitate a further understanding of the potential long-term effects of anthropogenic noise, whose analyses should be prioritised in the context of environmental impact assessment, resource management and biodiversity conservation.
DOI: 10.6084/m9.figshare.11393931.v1
title: Behavioural responses in a congested sea: an observational study on a coastal nest-guarding fish

description: The deleterious effects of anthropogenic noise on animal communication are nowadays recognised, not only in urban environments but also in terrestrial habitats and along coasts and in open waters. Yet, the assessment of short- and long-term exposure consequences of anthropogenic noise in marine organisms remains challenging, especially in fish and invertebrates. Males of the Mediterranean damselfish <i>Chromis chromis</i> vocalise and perform visual displays (multimodal communication) to attract mates. The frequency-range of courtship vocalisations overlaps with low-frequency noise generated by maritime activities, resulting in a reduced detection distance among conspecifics. We quantified the number of courtship-related visual displays performed by males living in areas with different levels of maritime traffic. We also tried to manipulate ambient noise in the field to test male short-term response to increased noise levels. Males living in busier areas (near to a harbour) performed significantly more visual displays than those living in less congested areas. When exposed to artificially-increased ambient noise level (playback of boat noise), males did not adjust the number of visual displays accordingly. Yet, we note how assessing the actual effect of maritime traffic in marine populations in their natural environments is particularly difficult, as the effects of boat noise cannot be easily disentangled from a variety of other intrinsic or environmental factors, discussed in the paper. We thus present suggestions to obtain more robust analyses of variations of courtship behaviours in territorial fishes. We hope this will facilitate a further understanding of the potential long-term effects of anthropogenic noise, whose analyses should be prioritised in the context of environmental impact assessment, resource management and biodiversity conservation.
DOI: 10.6084/m9.figshare.11393853
title: MOESM5 of Adapting evidence-informed complex population health interventions for new contexts: a systematic review of guidance

description: Additional file 5. Adaptation steps and phases. This additional file provides adaptation steps as originally reported in the included studies, as well as and the frequency of reporting of each step across the papers)
DOI: 10.6084/m9.figshare.11393853.v1
title: MOESM5 of Adapting evidence-informed complex population health interventions for new contexts: a systematic review of guidance

description: Additional file 5. Adaptation steps and phases. This additional file provides adaptation steps as originally reported in the included studies, as well as and the frequency of reporting of each step across the papers)
DOI: 10.6084/m9.figshare.11393823
title: MOESM1 of A high-throughput quantification of resin and rubber contents in Parthenium argentatum using near-infrared (NIR) spectroscopy

description: Additional file 1: Table S1. Regression coefficients across the whole NIR spectrum wavelengths obtained from samples grown under different irrigation conditions (i.e. DRY and IRR).
DOI: 10.6084/m9.figshare.11393823.v1
title: MOESM1 of A high-throughput quantification of resin and rubber contents in Parthenium argentatum using near-infrared (NIR) spectroscopy

description: Additional file 1: Table S1. Regression coefficients across the whole NIR spectrum wavelengths obtained from samples grown under different irrigation conditions (i.e. DRY and IRR).
DOI: 10.6084/m9.figshare.11393787
title: MOESM1 of Medfly-Wolbachia symbiosis: genotype x genotype interactions determine host’s life history traits under mass rearing conditions

description: Additional file 1. Biological material used in the experiments.
DOI: 10.6084/m9.figshare.11393787.v1
title: MOESM1 of Medfly-Wolbachia symbiosis: genotype x genotype interactions determine host’s life history traits under mass rearing conditions

description: Additional file 1. Biological material used in the experiments.
DOI: 10.6084/m9.figshare.11393688
title: MOESM5 of Molecular evolution and expression of opsin genes in Hydra vulgaris

description: Additional file 5: Table S4. GTF file of combined StringTie and Hydra v2.0 gene models. (GTF 50712 kb)
DOI: 10.6084/m9.figshare.11393682
title: MOESM4 of Molecular evolution and expression of opsin genes in Hydra vulgaris

description: Additional file 4: Table S1. Assigned H. vulgaris opsin gene names and locations. Table S2. H. vulgaris opsin sequences and GenBank accession numbers. Table S3. Single cell clustering for phototransduction genes.
DOI: 10.6084/m9.figshare.11393688.v1
title: MOESM5 of Molecular evolution and expression of opsin genes in Hydra vulgaris

description: Additional file 5: Table S4. GTF file of combined StringTie and Hydra v2.0 gene models. (GTF 50712 kb)
DOI: 10.6084/m9.figshare.11393682.v1
title: MOESM4 of Molecular evolution and expression of opsin genes in Hydra vulgaris

description: Additional file 4: Table S1. Assigned H. vulgaris opsin gene names and locations. Table S2. H. vulgaris opsin sequences and GenBank accession numbers. Table S3. Single cell clustering for phototransduction genes.
DOI: 10.6084/m9.figshare.11393631
title: MOESM7 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 7. FIREVAT Report on HCC1954. The FIREVAT variant refinement report on the sample HCC1954.
DOI: 10.6084/m9.figshare.11393625
title: MOESM6 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 6. FIREVAT Report on TCGA-EE-A29B. The FIREVAT variant refinement report on the sample TCGA-EE-A29B.
DOI: 10.6084/m9.figshare.11393631.v1
title: MOESM7 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 7. FIREVAT Report on HCC1954. The FIREVAT variant refinement report on the sample HCC1954.
DOI: 10.6084/m9.figshare.11393619
title: MOESM5 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 5. FIREVAT Report on TCGA-44-2662-01B. The FIREVAT variant refinement report on the sample TCGA-44-2662-01B.
DOI: 10.6084/m9.figshare.11393625.v1
title: MOESM6 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 6. FIREVAT Report on TCGA-EE-A29B. The FIREVAT variant refinement report on the sample TCGA-EE-A29B.
DOI: 10.6084/m9.figshare.11393613
title: MOESM4 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 4. FIREVAT Report on TCGA-CR-7399. The FIREVAT variant refinement report on the sample TCGA-CR-7399.
DOI: 10.6084/m9.figshare.11393619.v1
title: MOESM5 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 5. FIREVAT Report on TCGA-44-2662-01B. The FIREVAT variant refinement report on the sample TCGA-44-2662-01B.
DOI: 10.6084/m9.figshare.11393607
title: MOESM3 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 3.Â Table S1. Summary of artifact signatures in publicly available callsets, Table S2. FIREVAT VCF attribute usage and configuration by callset on the mc3 performance validation dataset, Table S3. MC3 performance validation dataset samples, Table S4. FIREVAT performance summary on the mc3 performance validation dataset, Table S5. FIREVAT performance on the mc3 performance validation dataset, Table S6 and S7. FIREVAT refinement on the multi-region whole-exome sequencing of breast cancer dataset, Table S8. TCGA-HNSC dataset before and after firevat refinement, Table S9. TCGA platinum therapy response dataset before and after FIREVAT refinement, Table S10. Characteristics of artifactual variants identified by FIREVAT in publicly available VCF callsets.
DOI: 10.6084/m9.figshare.11393613.v1
title: MOESM4 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 4. FIREVAT Report on TCGA-CR-7399. The FIREVAT variant refinement report on the sample TCGA-CR-7399.
DOI: 10.6084/m9.figshare.11393607.v1
title: MOESM3 of FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures

description: Additional file 3.Â Table S1. Summary of artifact signatures in publicly available callsets, Table S2. FIREVAT VCF attribute usage and configuration by callset on the mc3 performance validation dataset, Table S3. MC3 performance validation dataset samples, Table S4. FIREVAT performance summary on the mc3 performance validation dataset, Table S5. FIREVAT performance on the mc3 performance validation dataset, Table S6 and S7. FIREVAT refinement on the multi-region whole-exome sequencing of breast cancer dataset, Table S8. TCGA-HNSC dataset before and after firevat refinement, Table S9. TCGA platinum therapy response dataset before and after FIREVAT refinement, Table S10. Characteristics of artifactual variants identified by FIREVAT in publicly available VCF callsets.
DOI: 10.6084/m9.figshare.11393475
title: MOESM1 of Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases

description: Additional file 1: Table S1. Number of classified variants in the Idiopathic Diseases of Human (IDIOM) study per participant. Table S2. Number of classified variants in the Molecular Autopsy (MA) study per participant. Table S3. A. Summary of the demographic characteristics and findings after re-analysis in the 51 cases of rare diseases from the Idiopathic Diseases of Human (IDIOM) study. Table S3. B. Summary of the demographic characteristics and autopsy findings after re-analysis in the 50 cases of sudden death in the young from the Molecular Autopsy (MA) study. Table S4. A. Annotation and classification of variants after re-analysis in the 51 cases of rare diseases from the Idiopathic Diseases in Human (IDIOM) study. Table S4. B. Annotation and classification of variants after re-analysis in the 50 cases of sudden death in the young from the Molecular Autopsy (MA) study.
DOI: 10.6084/m9.figshare.11393475.v1
title: MOESM1 of Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases

description: Additional file 1: Table S1. Number of classified variants in the Idiopathic Diseases of Human (IDIOM) study per participant. Table S2. Number of classified variants in the Molecular Autopsy (MA) study per participant. Table S3. A. Summary of the demographic characteristics and findings after re-analysis in the 51 cases of rare diseases from the Idiopathic Diseases of Human (IDIOM) study. Table S3. B. Summary of the demographic characteristics and autopsy findings after re-analysis in the 50 cases of sudden death in the young from the Molecular Autopsy (MA) study. Table S4. A. Annotation and classification of variants after re-analysis in the 51 cases of rare diseases from the Idiopathic Diseases in Human (IDIOM) study. Table S4. B. Annotation and classification of variants after re-analysis in the 50 cases of sudden death in the young from the Molecular Autopsy (MA) study.
DOI: 10.6084/m9.figshare.11393457
title: MOESM4 of Evaluation of synthetic formaldehyde and methanol assimilation pathways in Yarrowia lipolytica

description: Additional file 4: Table S1. Sequences of synthetic gene fragments and those of PCR oligos for amplification of promoters, terminators and ARS.
DOI: 10.6084/m9.figshare.11393457.v1
title: MOESM4 of Evaluation of synthetic formaldehyde and methanol assimilation pathways in Yarrowia lipolytica

description: Additional file 4: Table S1. Sequences of synthetic gene fragments and those of PCR oligos for amplification of promoters, terminators and ARS.
DOI: 10.6084/m9.figshare.11393415
title: MOESM2 of Hepatic metabolomics and transcriptomics to study susceptibility to ketosis in response to prepartal nutritional management

description: Additional file 2. Biochemical compounds identified by the metabolomics analysis of liver tissue.
DOI: 10.6084/m9.figshare.11393424
title: MOESM3 of Hepatic metabolomics and transcriptomics to study susceptibility to ketosis in response to prepartal nutritional management

description: Additional file 3. Profiles of biomarkers analyzed in plasma, and statistical output.
DOI: 10.6084/m9.figshare.11393415.v1
title: MOESM2 of Hepatic metabolomics and transcriptomics to study susceptibility to ketosis in response to prepartal nutritional management

description: Additional file 2. Biochemical compounds identified by the metabolomics analysis of liver tissue.
DOI: 10.6084/m9.figshare.11393424.v1
title: MOESM3 of Hepatic metabolomics and transcriptomics to study susceptibility to ketosis in response to prepartal nutritional management

description: Additional file 3. Profiles of biomarkers analyzed in plasma, and statistical output.
DOI: 10.6084/m9.figshare.11393409
title: MOESM1 of Hepatic metabolomics and transcriptomics to study susceptibility to ketosis in response to prepartal nutritional management

description: Additional file 1. Differentially expressed genes (DEG), overall summary of the bioinformatics analysis using the Dynamic Impact Approach (DIA), and individual categories and subcategories affected by the DEG in cows developing ketosis postpartum.
DOI: 10.6084/m9.figshare.11393409.v1
title: MOESM1 of Hepatic metabolomics and transcriptomics to study susceptibility to ketosis in response to prepartal nutritional management

description: Additional file 1. Differentially expressed genes (DEG), overall summary of the bioinformatics analysis using the Dynamic Impact Approach (DIA), and individual categories and subcategories affected by the DEG in cows developing ketosis postpartum.
DOI: 10.6084/m9.figshare.11392986
title: Supplemental Table S2

description: Rare dosage variants and associated haploid inducer SNP profiles
DOI: 10.6084/m9.figshare.11392968
title: Supplemental Table S1

description: Summary of sequencing data
DOI: 10.6084/m9.figshare.11392968.v1
title: Supplemental Table S1

description: Summary of sequencing data
DOI: 10.6084/m9.figshare.11392986.v1
title: Supplemental Table S2

description: Rare dosage variants and associated haploid inducer SNP profiles
DOI: 10.26180/5df9c7c555fbf
title: Chakraborty et al: Local adaptation & temperature*nutrition

description: These are the raw data and Rmd scripts for the manuscript entitled "Local adaptation changes plastic responses to combinations of thermal and nutritional stress". This includes data for egg-to-adult viability, egg-to-adult development time, wing size, and femur size for three populations of <i>Drosophila melanogaster. </i>These animals were raised on one of 25 diets and at one of 2 temperatures.