cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rv15dv48v
title: A tangled web: comparing inter- and intraspecific mating dynamics in Anasa squash bugs

description: Reproductive interference, reproductive interactions between
 heterospecific individuals including mating, is commonly reported across
 taxa but its drivers are still unclear. Studying heterospecific matings in
 the context of their conspecific mating system— by relating an
 individual’s conspecific mating behavior to its heterospecific
 interactions— offers a powerful approach to address this uncertainty. Here
 we compare inter- and intraspecific mating dynamics in the squash bug
 Anasa tristis and its close relative Anasa andresii under semi-natural
 conditions. Using replicated enclosures, we surveyed the mating behavior
 of individually marked A. tristis and A. andresii bugs (5 males and 5
 females of each species per trial) at hourly intervals using a robotic
 camera system over a 14-day period. We uncovered high levels of
 reproductive interference (19% of individuals engaged in
 heterospecific matings) but the majority of mating activity took place
 between conspecifics. A. tristis females which engaged in heterospecific
 matings had comparable hatching success with those which did not.
 Therefore, in this system, relatively high levels of reproductive
 interference may emerge under semi-natural conditions as a byproduct of
 limited intraspecific pre-copulatory choice paired with limited fitness
 penalties for at least one of the species involved.
description: See ReadMe tab in uploaded file for a guide to column
 headers.
DOI: 10.5061/dryad.kd51c5b72
title: Calopteryx splendens personality in the wild

description: We studied nine behavioural traits, in the damselfly Calopteryx splendens,
 from an array of three experiments: (i) courtship, (ii) aggressiveness and
 (iii) boldness, and calculated their repeatability. The behaviours were
 measured twice, in two different contexts: (i) undisturbed territory and
 (ii) partially deteriorated territory. Traits related to courtship and
 boldness were all repeatable across the two contexts. Among aggressive
 behaviours only one trait (number of hits) was repeatable.
DOI: 10.5061/dryad.mpg4f4r1q
title: Palaeoecological data of KP core, Kampar Peninsula, Riau, Sumatra, Indonesia

description: Southeast Asian peatlands, along with their various important ecosystem
 services, are mainly distributed in the coastal areas of Sumatra and
 Borneo. These ecosystems are threatened by coastal development, global
 warming and sea level rise (SLR). Despite receiving growing attention for
 their biodiversity and as massive carbon stores, there is still a lack of
 knowledge on how they initiated and evolved over time, and how they
 responded to past environmental change, i.e., precipitation, sea level and
 early anthropogenic activities. To improve our understanding thereof, we
 conducted multi-proxy palaeoecological studies in the Kampar Peninsula and
 Katingan peatlands in the coastal area of Riau and Central Kalimantan,
 Indonesia. The results indicate that the initiation timing and environment
 of both peatlands are very distinct, suggesting that peat could form under
 various vegetation as soon as there is sufficient moisture to limit
 organic matter decomposition. The past dynamics of both peatlands were
 mainly attributable to natural drivers, while anthropogenic activities
 were hardly relevant. Changes in precipitation and sea level led to shifts
 in peat swamp forest vegetation, peat accumulation rates, and fire regimes
 at both sites. We infer that the simultaneous occurrence of El
 Niño-Southern Oscillation (ENSO) events and SLR resulted in synergistic
 effects which led to the occurrenceere fires in a pristine coastal
 peatland ecosystem, however, it did not interrupt peat accretion. In the
 future, SLR, combined with the projected increase in frequency and
 intensity of ENSO, can potentially amplify the negative effects of
 anthropogenic peatland fires. This prospectively stimulates massive carbon
 release, thus could, in turn, contribute to worsening the global climate
 crisis especially once an as yet unknown threshold is crossed and peat
 accretion is halted, i.e., peatlands lose their carbon sink function.
 Given the current rapid SLR, coastal peatland managements should start
 develop fire risk reduction or mitigation strategies.
description: The investigation including pollen and spore, loss-on-ignition,
 total organic carbon, stable carbon isotope and micro- and macrocharcoal
 was carried out on a peat core collected from coastal area in eastern
 Sumatra. Pollen, spore and charcoal extraction and
 identification, as well as Loss-On-Igntition analysis were conducted at
 the Dept. Palynology and Climate Dynamics, University of
 Goettingen. Organic carbon content and isotopes were
 determined in Euro EA3000 elemental analyzer and Thermo Finnigan Delta
 Plus mass spectrometer, respectively, at the Leibniz Centre for Tropical
 Marine Research (ZMT), Bremen.
description: Fossil pollen and spore are in counts.
DOI: 10.5061/dryad.1g1jwstz2
title: The simulation results of relationship between cementation exponent m and total porosity of different diagenetic facies with different content of parameters

description: The study of conduction mechanism is the key to establishing the
 subsequent physical derivations, resistivity simulation and saturation
 models. The purpose of this research is to clarify the conduction
 mechanisms under different diagenetic facies and build suitable saturation
 evaluation models. Experimental data of tight gas sandstone from the Ordos
 Basin were analysed, including data from scanning electron microscopy,
 conventional core physical property analysis, core casting thin section
 analysis, core mercury intrusion experiments, and rock electrical
 conductivity experiments. Accordingly, the diagenetic minerals of the
 study block were examined, the diagenetic facies were classified by
 differences in diagenetic properties across the study area. The reservoir
 was divided into 3 types of diagenetic facies: construction facies,
 cementation facies, and destruction facies. On this basis, the
 conductivity characteristics and saturation models of different diagenetic
 facies within the study area were systematically discussed for the first
 time. A number of experiments have shown that according to the type of
 diagenesis, the structure of the pores, and the influence of the
 reservoir, a classification scheme for diagenetic facies (consisting of
 construction, cementation, and destruction facies) can be established.
 According to the influence of the diagenesis of various diagenetic facies,
 theoretical pore structure models of the three diagenetic facies were
 established, in which the construction facies includes mainly dissolved
 feldspar pores and intergranular pores, the destruction facies includes
 clay residual intergranular pores and intergranular pores, and the
 cementation facies includes primarily residual intergranular pores. Based
 on these theoretical pore structure models, the construction facies was
 evaluated with a pore-connected vuggy conductivity model, the destruction
 facies was evaluated with a nonconnected matrix pore conductivity model,
 and the cementation facies was evaluated with a residual intergranular
 pore conductivity model. Then, the rationality of each model and the
 effects of the parameters in each model on the final cementation exponent
 were analysed by simulation. The predicted cementation exponents of the
 diagenetic facies match the measured cementation exponents well and can
 guide the qualitative understanding of these characteristics in such
 reservoirs.
description: The dataset is the result of porosity and cementation exponent
 when the main parameters of conductivity models of different diagenetic
 facies change. In order to fully verify the reliability and rationality of
 conductivity model based on diagenetic facies.
DOI: 10.5061/dryad.69p8cz93d
title: Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2

description: Cell cycle gene expression programs fuel proliferation and are universally
 dysregulated in cancer. The retinoblastoma (RB)-family of proteins, RB1,
 RBL1/p107, and RBL2/p130, coordinately represses cell cycle gene
 expression, inhibiting proliferation, and suppressing tumorigenesis.
 Phosphorylation of RB-family proteins by cyclin-dependent kinases is
 firmly established. Like phosphorylation, ubiquitination is essential to
 cell cycle control, and numerous proliferative regulators, tumor
 suppressors, and oncoproteins are ubiquitinated. However, little is known
 about the role of ubiquitin signaling in controlling RB-family proteins. A
 systems genetics analysis of CRISPR/Cas9 screens suggested the potential
 regulation of the RB-network by cyclin F, a substrate recognition receptor
 for the SCF family of E3 ligases. We demonstrate that RBL2/p130 is a
 direct substrate of SCFcyclin F. We map a cyclin F regulatory site to a
 flexible linker in the p130 pocket domain, and show that this site
 mediates binding, stability, and ubiquitination. Expression of a mutant
 version of p130, which cannot be ubiquitinated, severely impaired
 proliferative capacity and cell cycle progression. Consistently, we
 observed reduced expression of cell cycle gene transcripts, as well a
 reduced abundance of cell cycle proteins, analyzed by quantitative,
 iterative immunofluorescent imaging. These data suggest a key role for
 SCFcyclin F in the CDK-RB network and raise the possibility that aberrant
 p130 degradation could dysregulate the cell cycle in human cancers.
DOI: 10.5061/dryad.0gb5mkm2c
title: Data from: The sound of recovery: coral reef restoration success is detectable in the soundscape

description: 1. Pantropical degradation of coral reefs is prompting considerable
 investment in their active restoration. However, current measures of
 restoration success are based largely on coral cover, which does not fully
 reflect ecosystem function or reef health. 2. Soundscapes are an important
 aspect of reef health; loud and diverse soundscapes guide the recruitment
 of reef organisms, but this process is compromised when degradation
 denudes soundscapes. As such, acoustic recovery is a functionally
 important component of ecosystem recovery. 3. Here, we use acoustic
 recordings taken at one of the world’s largest coral reef restoration
 projects to test whether successful restoration of benthic and fish
 communities is accompanied by a restored soundscape. We analyse recordings
 taken simultaneously on healthy, degraded (extensive historic blast
 fishing) and restored reefs (restoration carried out for 1–3 years on
 previously-degraded reefs). We compare soundscapes using manual counts of
 biotic sounds (phonic richness), and two commonly used computational
 analyses (acoustic complexity index [ACI] and sound-pressure level [SPL]).
 4. Healthy and restored reef soundscapes exhibited a similar diversity of
 biotic sounds (phonic richness), which was significantly higher than
 degraded reef soundscapes. This pattern was replicated in some automated
 analyses but not others; the ACI exhibited the same qualitative result as
 phonic richness in a low-frequency, but not a high-frequency bandwidth,
 and there was no significant difference between SPL values in either
 frequency bandwidth. Further, the low-frequency ACI and phonic richness
 scores were only weakly correlated despite showing a qualitatively
 equivalent overall result, suggesting that these metrics are likely to be
 driven by different aspects of the reef soundscape. 5. Synthesis and
 applications: These data show that coral restoration can lead to
 soundscape recovery, demonstrating the return of an important ecosystem
 function. They also suggest that passive acoustic monitoring (PAM) might
 provide functionally important measures of ecosystem-level recovery – but
 only some PAM metrics reflect ecological status, and those that did are
 likely to be driven by different communities of soniferous animals.
 Recording soundscapes represents a potentially valuable tool for
 evaluating restoration success across ecosystems, but caution must be
 exercised when choosing metrics and interpreting results.
description: Data for benthic surveys, fish surveys and acoustic analyses of
 coral reef recordings. Data collected as described in methods.
DOI: 10.5061/dryad.f1vhhmgz6
title: The nutritional condition of moose co-varies with climate, but not with density, predation risk, or diet composition

description: A fundamental question about the ecology of herbivore populations pertains
 to the relative influence of biotic and abiotic processes on nutritional
 condition. Nutritional condition is influenced in important, yet poorly
 understood, ways by plant secondary metabolites (PSMs) which can adversely
 affect a herbivore’s physiology and energetics. Here we assess the
 relative influence of various abiotic (weather) and biotic (intraspecific
 competition, predation risk and diet composition) factors on indicators of
 nutritional condition and the energetic costs of detoxifying PSMs for the
 moose population in Isle Royale National Park (U.S.A.). Specifically, we
 observed interannual variation in the ratio of urea nitrogen to creatinine
 (UN:C), an indicator of nutritional restriction, over 29 years and the
 ratio of glucuronic acid to creatinine (GA:C), an indicator of energetic
 investment, in detoxifying PSMs over 19-years. Both UN:C and GA:C were
 measured in samples of urine-soaked snow. Most importantly, climatic
 factors explained 66% of the interannual variation in UN:C, with moose
 being more nutritionally stressed during winters with deep snow and during
 winters that followed warm summers. None of the biotic factors (density,
 predation, diet composition) were useful predictors of UN:C or GA:C. The
 absence of a relationship between diet composition and either UN:C or GA:C
 suggests that the nutritional ecology of wild herbivores is probably
 complicated by fine-scale variation in protein content and concentrations
 of PSMs amongst plants of the same species. UN:C increased with GA:C at
 both the individual and population-level. That result is consistent with
 detoxification being energetically costly, such that it impairs
 nutritional condition and also highlight show spatio-temporal variation in
 the intake and detoxification of PSMs may influence population dynamics.
 Lastly, because we observed interannual variation in nutritional condition
 over three decades and detoxification over two decades these findings are
 relevant to concerns about how herbivore populations respond to climate
 change.
description: See main manuscript & Supporting Information.
DOI: 10.5061/dryad.sf7m0cg7m
title: Highly resolved papilionoid legume phylogeny based on plastid phylogenomics

description: Comprising 501 genera and around 14,000 species, Papilionoideae is not
 only the largest subfamily of Fabaceae (Leguminosae; legumes), but also
 one of the most extraordinarily diverse clades among angiosperms.
 Papilionoids are a major source of food and forage, are ecologically
 successful in all major biomes, and display dramatic variation in both
 floral architecture and plastid genome (plastome) structure. Plastid
 DNA-based phylogenetic analyses have greatly improved our understanding of
 relationships among the major groups of Papilionoideae, yet the backbone
 of the subfamily phylogeny remains unresolved. In this study, we sequenced
 and assembled 39 new plastomes that are covering key genera of evolution
 and morphological diversity in the subfamily. From 244 total taxa, we
 produced eight datasets for maximum likelihood (ML) analyses based on
 entire plastomes and/or concatenated sequences of 77 protein-coding
 sequences (CDS) and two datasets for multispecies coalescent (MSC)
 analyses based on individual gene trees. We additionally produced a
 combined nucleotide dataset comprising CDS plus matK gene sequences only,
 in which most papilionoid genera were sampled. An ML tree based on the
 entire plastome maximally supported all of the deep and most recent
 divergences of papilionoids (223 out of 236 nodes). The Swartzieae, ADA
 (Angylocalyceae, Dipterygeae, and Amburaneae), Cladrastis, Andira, and
 Exostyleae clades formed a grade to the remainder of the Papilionoideae,
 concordant with nine ML and two MSC trees. Phylogenetic relationships
 among the remaining five papilionoid lineages (Vataireoid, Dermatophyllum,
 Genistoid s.l., Dalbergioid s.l., and Baphieae + Non-Protein Amino Acid
 Accumulating or NPAAA clade) remained uncertain, because of insufficient
 support and/or conflicting relationships among trees. Our study fully
 resolved most of the deep nodes of Papilionoideae, however some
 relationships require further exploration. More genome-scale data and
 rigorous analyses are needed to disentangle phylogenetic relationships
 among the five remaining lineages.
DOI: 10.5061/dryad.2280gb5tb
title: Elevated atmospheric CO2 changes defence allocation in wheat but herbivore resistance persists

description: Predicting how plants allocate to different anti-herbivore defences in
 response to elevated carbon dioxide (CO2) concentrations is important for
 understanding future patterns of crop susceptibility to herbivory.
 Theories of defence allocation, especially in the context of environmental
 change, largely overlook the role of silicon (Si), despite it being the
 major anti-herbivore defence in the Poaceae. We demonstrated that elevated
 levels of atmospheric CO2 (e[CO2]) promoted plant growth by 33% and caused
 wheat (Triticum aestivum) to switch from Si (–19%) to phenolic (+44%)
 defences. Despite the lower levels of Si under e[CO2], resistance to the
 global pest Helicoverpa armigera persisted; relative growth rates (RGR)
 were reduced by at least 33% on Si supplied plants, irrespective of CO2
 levels. RGR was negatively correlated with leaf Si concentrations.
 Mandible wear was c. 30% higher when feeding on Si supplemented plants
 compared to those feeding on plants with no Si supply. We conclude that
 higher carbon availability under e[CO2] reduces silicification and causes
 wheat to increase concentrations of phenolics. However, Si supply, at all
 levels, suppressed the growth of H. armigera under both CO2 regimes,
 suggesting that shifts in defence allocation under future climate change
 may not compromise herbivore resistance in wheat.
description: The dataset was derived from a manipulative glasshouse experiment
 that varied Si supply to wheat grown under ambient and elevated carbon
 dioxide concentrations. It was analysed with several statstical analysis
 tests.
description: See accompanying README file that explains the dataset. Missing
 values in the dataset, arising mostly through sub-sampling of plants, are
 described in Fig. S1 of electronic supplementay material and indicated
 'n/a' in the Excel file.
DOI: 10.5061/dryad.s1rn8pk90
title: Record low Arctic sea ice extent in 2012 linked to two-year La Niña-driven sea surface temperature pattern

description: Arctic summer sea ice decline accelerated from the mid-2000s to 2012, with
 the 2012 record low remaining unbroken. While frequent La Niña events
 during this period have been suggested as a driver of this trend
 acceleration, no convincing evidence has been presented. Here, using a
 climate model nudged to observed pan-tropical sea surface temperatures
 (SST), we show that the back-to-back La Niña events during 2010–2011,
 followed by a North Pacific cooling and a marginal El Niño, were a key
 contribution to the 2012 record low. Specifically, the La Niña events in
 2010–2011 warmed the Arctic Pacific sector, whereas tropical SST anomalies
 in 2012 strengthened the Greenland high pressure, leading to an Arctic
 dipole-like pressure pattern and strengthening of transpolar ice drift.
 These Arctic temperature and circulation anomalies led to the record low
 sea ice extent in 2012, highlighting the strong influence of tropical SSTs
 on Arctic climate.
DOI: 10.5061/dryad.1ns1rn8vn
title: The genetic drivers for the successful invasive potential of a generalist bird, the House crow

description: What kind of genetic structure helps the rapid range expansion of the
 invasive species is  fundamental to understand spread of
 invasion. The House crow (Corvus splendens), an ecological generalist,
 having a large native and introduced distribution range, is a good study
 model to investigate the genetic structure and adaptations underpinning
 the evolutionary potential for successful biological invasion. Thirteen
 mainland and one island native population from the Indian subcontinent
 were studied using four nuclear introns and mitochondrial genome to
 determine the phylogeographic structure and demographic history. A large,
 panmictic long-term expanding native population dating from the last
 glacial period (~30,000 ya) was inferred leading to great genetic
 diversity across the whole native range. The thirteen mitochondrial
 encoded proteins, directly involved in the energy supplying pathway, could
 underlie metabolic adaptations during range expansion under diverse
 climate conditions. Therefore, to investigate the molecular selection on
 these genes in native and introduced ranges, five previously studied
 introduced populations from Southeast Asia and Africa were
 included.  The native populations originating from hot arid and
 humid tropical areas exhibited the signatures of positive selection on
 four codons located in three genes (ND5, Cytb and COX2), suggesting these
 may have evolved under environmental stresses in those regions. Our
 findings demonstrated the native range population as the reservoir of the
 species’ genetic diversity, mitogenomic patterns of the introduced
 populations related to native range of species and no variants could be
 associated with climate in introduced range. Thus, inferred that the
 pre-adapted standing genetic variations evolved during dispersion over the
 native range are the predominant source of the high evolutionary potential
 and contribute to the successful invasion history. These findings will
 help to predict the future introduced range of the House crow.
DOI: 10.5061/dryad.mgqnk991c
title: CrossLoc Benchmark Datasets

description: To study the data-scarcity mitigation for learning-based visual
 localization methods via sim-to-real transfer, we curate and now present
 the CrossLoc benchmark datasets—a multimodal aerial sim-to-real
 data available for flights above nature and urban terrains. Unlike the
 previous computer vision datasets focusing on localization in a single
 domain (mostly real RGB images), the provided benchmark datasets include
 various multimodal synthetic cues paired to all real photos. Complementary
 to the paired real and synthetic data, we offer rich synthetic data that
 efficiently fills the flight envelope volume in the vicinity of the real
 data.    The synthetic data rendering was achieved using
 the proposed data generation workflow TOPO-DataGen. The provided CrossLoc
 datasets were used as an initial benchmark to showcase the use of
 synthetic data to assist visual localization in the real world with
 limited real data. Please refer to our main paper at
 https://arxiv.org/abs/2112.09081 and our code at
 https://github.com/TOPO-EPFL/CrossLoc for details.
description: The dataset collection, processing, and validation details are
 explained in our paper available at https://arxiv.org/abs/2112.09081 and our code available at https://github.com/TOPO-EPFL/CrossLoc. 
description: Please refer to our paper available at https://arxiv.org/abs/2112.09081 and our code available at https://github.com/TOPO-EPFL/CrossLoc for further details regarding the use of the datasets.