cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/j4c-6dd-6qb
title: Nyctobrya (Bryopsis) muralis (Forster, 1771)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wxv-rgw-qa9
title: Elaphria venustula (Hübner, 1790)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1wp-6eb-wr8
title: Hoplodrina octogenaria (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zzl-g8v-4a4
title: Hoplodrina octogenaria (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bg9-g8q-f67
title: Papilio paris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d63-5qb-g59
title: Acronicta (Viminia) menyanthidis (Esper)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q8t-nhg-512
title: Parantica melaneus (Cramer)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rcy-hkl-rvz
title: Phlogophora meticulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vft-eeh-epv
title: Amphipoea fucosa Freyer, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2c3-26g-1ft
title: Charanyca (Charanyca) trigrammica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wnc-8e8-acq
title: Helotropha leucostigma Hübner, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/11j-p12-hrm
title: Amphipoea oculea Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ytv-4rb-eme
title: Atrophaneura

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g8e-qb7-epl
title: Elaphria venustula (Hübner, 1790)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gdy-qzf-0t5
title: Atrophaneura

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9l7-x5j-9sl
title: Graphium eurypylus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xft-x1c-dwe
title: Papilio polytes Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jf5-s02-cvn
title: Danaus (Salatura) melanippus (Cramer)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fez-qqp-wzp
title: Papilio paris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tx4-ven-jg3
title: Amphipoea fucosa Freyer, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vwm-1e7-lr6
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y5s-6ns-zn4
title: Hoplodrina octogenaria (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lf8-vcg-3rd
title: Acronicta (Viminia) auricoma ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ap0-6hj-41r
title: Celaena haworthii Curtis, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tz5-1r1-yhy
title: Caradrina (Paradrina) clavipalpis (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.gmfhkr
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cavendishia nitida (Kunth) A.C.Sm."
 ]
}

 The dataset includes 297 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101714-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/e7m-zps-pw1
title: Caradrina (Paradrina) clavipalpis (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qad-9qs-899
title: Papilio helenus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4f7-0f4-b9a
title: Phlogophora meticulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/42c-mh9-0g8
title: Papilionidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29488127
title: <b>Volumetric and Cortical Thickness Alterations in Alcohol Dependence: Evidence of Accelerated Brain Aging and Clinical Correlations</b>

description: This study investigated structural brain alterations and accelerated brain aging in individuals with alcohol dependence. Thirty-one alcohol-dependent patients and 26 matched healthy controls underwent high-resolution MRI scanning. Automated volumetric and cortical thickness analyses were performed using the volBrain platform. Results revealed widespread brain volume reductions and cortical thinning in the alcohol group, particularly in frontal, motor, and subcortical regions. Brain-predicted age was significantly higher in patients, suggesting accelerated neurobiological aging. Clinical measures—alcohol severity (MATT), craving (PENN), depression (BDI-II), and anxiety (BAI)—showed specific correlations with regional brain volumes. These findings highlight the structural brain impacts of chronic alcohol use and suggest that brain-predicted age may serve as a useful biomarker for alcohol-related neurodegeneration.
DOI: 10.6084/m9.figshare.29488127.v1
title: <b>Volumetric and Cortical Thickness Alterations in Alcohol Dependence: Evidence of Accelerated Brain Aging and Clinical Correlations</b>

description: This study investigated structural brain alterations and accelerated brain aging in individuals with alcohol dependence. Thirty-one alcohol-dependent patients and 26 matched healthy controls underwent high-resolution MRI scanning. Automated volumetric and cortical thickness analyses were performed using the volBrain platform. Results revealed widespread brain volume reductions and cortical thinning in the alcohol group, particularly in frontal, motor, and subcortical regions. Brain-predicted age was significantly higher in patients, suggesting accelerated neurobiological aging. Clinical measures—alcohol severity (MATT), craving (PENN), depression (BDI-II), and anxiety (BAI)—showed specific correlations with regional brain volumes. These findings highlight the structural brain impacts of chronic alcohol use and suggest that brain-predicted age may serve as a useful biomarker for alcohol-related neurodegeneration.
DOI: 10.3535/9xz-l8d-w3y
title: Acronicta (Subacronicta) Kozhanchikov, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dgq-0va-08m
title: Papilionidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ex7-l92-rgm
title: Papilio demolion Cramer, [1776]

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vpt-a4m-95s
title: Lethe confusa Aurivillius, 1897

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w4v-ker-lqs
title: Graphium agamemnon (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rqd-ma8-ww6
title: Dypterygia scabriuscula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t1z-49k-eww
title: Acronicta (Subacronicta) Kozhanchikov, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fck-8p8-b0x
title: Acronicta (Viminia) rumicis Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q8z-p95-em3
title: Acronicta (Viminia) rumicis Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vvb-mnd-w3c
title: Papilio peranthus Fabricius, 1787

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c2g-q07-4cr
title: Cryphia (Cryphia) Hübner, 1818

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29l-f1y-a24
title: Athetis (Hydrillula) pallustris (Hübner, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.bt65na
title: Occurrence Download

description: A dataset containing 66152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.43097 36.79014,-5.71457 36.07356,-4.79487 36.45604,-4.2721 36.88312,-4.81424 37.55382,-5.94692 37.53847,-6.43097 36.79014,-6.43097 36.79014))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 66152 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055976-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e193506v1
title: 2018 TBI Model System Collaborative: Characterization and Treatment of Chronic Pain after Moderate to Severe Traumatic Brain Injury

description: This is a multi-site, cross-sectional, observational study involving a total of 18 centers. Using the infrastructure of the TBIMS, this study will add new study measures at collaborative study sites and link this information with TBIMS Form I and II variables to address the study aims. Results from this study will provide a more detailed picture of the problem of chronic pain after TBI by examining the types of pain that occur after TBI, which may be multiple types of pain for a subset of individuals, as well as the frequency of comorbid conditions. Identifying extreme phenotypes, such as demographic, individual, and treatment factors associated with those who have chronic pain but have minimal interference compared to those who are significantly impacted by pain, will allow us to identify treatment targets (behavioral, cognitive, biological, and molecular) to advance a personalized medicine approach to treatment unlike any approach in TBI and chronic pain to date. Outcomes from this study will include educational materials on chronic pain and pain treatment to benefit patients, family members, clinicians, and policymakers. Data from this study will have a direct impact on clinical practice, informing future work, and promoting understanding of constituent factors in extreme phenotypes.
DOI: 10.6084/m9.figshare.24800341
title: Choice of gDNA isolation method has a significant impact on average murine Telomere Length estimates

description: Telomere Length (TL) and integrity is significantly associated with age-related disease, multiple genetic and environmental factors. We observe mouse genomic DNA (gDNA) isolation methods to have a significant impact on average TL estimates. The canonical qPCR method does not measure TL directly but via the ratio of telomere repeats to a single copy gene (SCG) generating a T/S ratio. We use a monochromatic-multiplex-qPCR (mmqPCR) method which multiplexes the PCR and enables quantification of the target and the single copy gene within the same qPCR reaction. We demonstrate that TL measurements, from murine gDNA, isolated via Spin Columns (SC) and Magnetic Beads (MB), generate significantly smaller T/S ratios compared to gDNA isolated via traditional phenol/chloroform methods. The former methods may impede correct TL estimation by producing non representative fragment sets and reducing qPCR efficacy. This work highlights discrepancies in TL measurements due to different extraction techniques. We recommend the use of gDNA isolation methods that are shown to preserve DNA length and integrity, such as phenol/chloroform isolation. We propose that widely used high throughput DNA isolation methodologies can create spurious associations within a sample set, thus creating misleading data. We suggest that published TL associations should be revisited in the light of these data.
DOI: 10.6084/m9.figshare.24800341.v1
title: Choice of gDNA isolation method has a significant impact on average murine Telomere Length estimates

description: Telomere Length (TL) and integrity is significantly associated with age-related disease, multiple genetic and environmental factors. We observe mouse genomic DNA (gDNA) isolation methods to have a significant impact on average TL estimates. The canonical qPCR method does not measure TL directly but via the ratio of telomere repeats to a single copy gene (SCG) generating a T/S ratio. We use a monochromatic-multiplex-qPCR (mmqPCR) method which multiplexes the PCR and enables quantification of the target and the single copy gene within the same qPCR reaction. We demonstrate that TL measurements, from murine gDNA, isolated via Spin Columns (SC) and Magnetic Beads (MB), generate significantly smaller T/S ratios compared to gDNA isolated via traditional phenol/chloroform methods. The former methods may impede correct TL estimation by producing non representative fragment sets and reducing qPCR efficacy. This work highlights discrepancies in TL measurements due to different extraction techniques. We recommend the use of gDNA isolation methods that are shown to preserve DNA length and integrity, such as phenol/chloroform isolation. We propose that widely used high throughput DNA isolation methodologies can create spurious associations within a sample set, thus creating misleading data. We suggest that published TL associations should be revisited in the light of these data.
DOI: 10.6084/m9.figshare.25027971.v1
title: Fractional mixture design: a novel design and methodology for analyzing and optimizing mixtures of several ingredients

description: Mixture designs are employed to systematically change the composition of mixtures and investigate how those changes impact their properties. However, all mixture designs currently available are impractical for analyzing mixtures with relatively large numbers of ingredients. In response, this article presents a novel solution that builds on the construction of a new experimental design called “fractional mixture design”. The design involves screening the ingredients in mixtures and enables the subsequent construction of a classical mixture design for optimizing mixtures. The design and its accompanying methodology were developed to analyze native strains found in successful spontaneous fermentations with the goal of constructing a mixed starter culture to transition from spontaneous to directed fermentation in the production of agave distillates. The results showed that a starter culture composed of the native strains <i>Kluyveromyces marxianus</i>, <i>Clavispora lusitaniae</i>, and <i>Kluyveromyces marxianus var. drosophilarum</i>, in respective proportions of 35%, 32%, and 33%, enabled the production of a fermented product with 2.1% alcohol and a broad profile of aromatic compounds. Hence, the results show, for the first time, a tool that addresses the technical challenge that allows studying a relatively large number of ingredients in mixtures and a two-stage sequential methodology to construct optimal mixtures.
DOI: 10.6084/m9.figshare.25027971
title: Fractional mixture design: a novel design and methodology for analyzing and optimizing mixtures of several ingredients

description: Mixture designs are employed to systematically change the composition of mixtures and investigate how those changes impact their properties. However, all mixture designs currently available are impractical for analyzing mixtures with relatively large numbers of ingredients. In response, this article presents a novel solution that builds on the construction of a new experimental design called “fractional mixture design”. The design involves screening the ingredients in mixtures and enables the subsequent construction of a classical mixture design for optimizing mixtures. The design and its accompanying methodology were developed to analyze native strains found in successful spontaneous fermentations with the goal of constructing a mixed starter culture to transition from spontaneous to directed fermentation in the production of agave distillates. The results showed that a starter culture composed of the native strains <i>Kluyveromyces marxianus</i>, <i>Clavispora lusitaniae</i>, and <i>Kluyveromyces marxianus var. drosophilarum</i>, in respective proportions of 35%, 32%, and 33%, enabled the production of a fermented product with 2.1% alcohol and a broad profile of aromatic compounds. Hence, the results show, for the first time, a tool that addresses the technical challenge that allows studying a relatively large number of ingredients in mixtures and a two-stage sequential methodology to construct optimal mixtures.
DOI: 10.6084/m9.figshare.28131770
title: Supplementary material raw data and measurements

description: Raw data and associated measurements for the information contained in the supplementary material of the paper.
DOI: 10.6084/m9.figshare.28131770.v1
title: Supplementary material raw data and measurements

description: Raw data and associated measurements for the information contained in the supplementary material of the paper.
DOI: 10.6084/m9.figshare.28131761
title: Measurements_silesaurids_coelophysoids.xlsx

description: Linear measurements of silesaurid and coelophysoid femora.
DOI: 10.5281/zenodo.14593724
title: ОСОБЕННОСТИ ГЛОССАЛГИИ У ЖЕНЩИН В КЛИМАКТЕРИЧЕСКОМ ПЕРИОДЕ И СОВЕРШЕНСТВОВАНИЕ ИХ ЛЕЧЕНИЯ
DOI: 10.5281/zenodo.14593725
title: ОСОБЕННОСТИ ГЛОССАЛГИИ У ЖЕНЩИН В КЛИМАКТЕРИЧЕСКОМ ПЕРИОДЕ И СОВЕРШЕНСТВОВАНИЕ ИХ ЛЕЧЕНИЯ
DOI: 10.6069/6ecg-p191
title: Global Burden of Disease Study 2021 (GBD 2021) Global Nutrition Targets Estimates and Forecasts 1990-2050

description: The Global Burden of Disease Study 2021 (GBD 2021), coordinated by the Institute for Health Metrics and Evaluation (IHME), estimated the burden of diseases, injuries, and risk factors for 204 countries and territories.  Six global nutrition targets (GNTs) related to low birthweight, exclusive breastfeeding, child growth (i.e., wasting, stunting, and overweight), and anemia among females of reproductive age were chosen by the World Health Assembly in 2012.  This dataset provides annual estimates for the prevalence and expected prevalence based on socio-demographic index (SDI) of the six GNT indicators in relevant age groups from 1990 to 2021, with projections of prevalence from 2022 to 2050.  It also provides annual estimates for the attributable burden of the indicators in the years 2012 and 2021, with population projections from 2022 to 2050.  The estimates are based on data sources used in GBD 2021.
DOI: 10.5281/zenodo.14593612
title: 【outputs_best_number_tokens_to_tpm_large_scales】/best_number_tokens_log_part_19 (4), only two 70B LLMs, 60 (tpms) = 60 files

description: Part 19 (4)  

only two 70B LLMs,  

only valid results (both MP p value and CI),

all permutation controls,

all seeds,

all linguistic spans,

all 5 tasks, 

60 (tpms) = 60 files
DOI: 10.5281/zenodo.14593613
title: 【outputs_best_number_tokens_to_tpm_large_scales】/best_number_tokens_log_part_19 (4), only two 70B LLMs, 60 (tpms) = 60 files

description: Part 19 (4)  

only two 70B LLMs,  

only valid results (both MP p value and CI),

all permutation controls,

all seeds,

all linguistic spans,

all 5 tasks, 

60 (tpms) = 60 files
DOI: 10.5281/zenodo.12666133
title: AWOFRO : Annotated tweet corpus of mixed Wolof-French for detecting obnoxious messages

description: These data are tweets of mixed Wolof-French codes annotated by three(3) annotators. They were extracted during the period from 1 January 2021 to 31 May 2023.

Content description :

Corpora.rar : The dataset contains 3510 annotated tweets
DOI: 10.5281/zenodo.12666134
title: SenAbus : Annotated tweet  corpus of mixed Wolof-French code for detecting abusive messages

description: These data are tweets of mixed Wolof-French codes annotated by three(3) annotators. They were extracted during the period from 1 January 2021 to 31 May 2023.

Content description :

Corpora.rar : The dataset contains 3510 annotated tweets
DOI: 10.5281/zenodo.12772622
title: SenAbus : Annotated tweet  corpus of mixed Wolof-French code for detecting abusive messages

description: These data are tweets of mixed Wolof-French codes annotated by three(3) annotators. They were extracted during the period from 1 January 2021 to 31 May 2023.

Content description :

Corpora.rar : The dataset contains 3510 annotated tweets
DOI: 10.5281/zenodo.14418640
title: AnnDoom : Annotated tweet corpus of mixed Wolof-French for detecting obnoxious messages

description: These data are tweets of mixed Wolof-French codes annotated by three(3) annotators. They were extracted during the period from 1 January 2021 to 31 May 2023.

Content description :

Corpora.rar : The dataset contains 3510 annotated tweets
DOI: 10.5281/zenodo.14594089
title: careproctus_comus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14594090
title: careproctus_comus_zanfona_1.fasta.gz
DOI: 10.25345/c5v698q6c
title: MassIVE MSV000096772 - Decoding the impact of isolation window selection and QuantUMS filtering in DIA-NN for DIA quantification of peptides and proteins
title: Proteomic studies using Data Independent Acquisition (DIA) has gained traction in all the fields of biology. The search engines are evolving to follow the newest instrument technology developments. DIA-NN is the most popular software for DIA analysis under academic usage licensing. The QuantUMS algorithm in DIA-NN enhances quantification quality control by calculating three scores (Protein Group MaxLFQ Quality, Empirical Quality, and Quantity Quality) that assess the agreement between MS1 and MS2 features. Applying specific cut-offs to these scores can significantly impact the results. Should we apply a uniform cut-off for all, some or none of these scores? What would represent a reasonable trade-off? Unfortunately, we cannot extract this information from the report automatically generated by DIA-NN. To let you decide what to do in a more informed way, we evaluated the impact of different combinations of the scores in data acquired using different isolation windows and developed the QC4DIANN Shiny App in R language for automation. We use the report.parquet file generated by DIA-NN to visualize the general behavior of the data based on the impact of the specific QuantUMS score filtering alone or in combination.
DOI: 10.5281/zenodo.14594150
title: careproctus_curilanus_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.14594151
title: careproctus_curilanus_zanfona_1.fasta.gz