cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13533421
title: Additional file 1 of Berry syndrome: a case report and literature review

description: Additional file 1. Literature review of 89 cases of Berry syndrome from 1982 to June 2019. The following clinical data were extracted and reviewed: sex, presence of clinical symptoms, premature birth, age at diagnosis, diagnostic methods, anomalies recognized by echocardiography, anatomic features of the cardiac anomalies (morphology of aortic artery, APW type, type of ductus arteriosus, and original site of RPA), associated cardiac and extracardiac anomalies, chromosomal abnormalities, age at surgery, types of surgery, postoperative details (postoperative hospitalization, postoperative follow-up time, postoperative complications, and reintervention after surgery), outcome, cause of death, preoperative and postoperative pulmonary artery pressure, and the presence of a massively dilated vascular sac.
DOI: 10.6084/m9.figshare.13534363
title: Additional file 4 of “AI’s gonna have an impact on everything in society, so it has to have an impact on public health”: a fundamental qualitative descriptive study of the implications of artificial intelligence for public health

description: Additional file 4. Detailed Coding Information.
DOI: 10.6084/m9.figshare.13534363.v1
title: Additional file 4 of “AI’s gonna have an impact on everything in society, so it has to have an impact on public health”: a fundamental qualitative descriptive study of the implications of artificial intelligence for public health

description: Additional file 4. Detailed Coding Information.
DOI: 10.6084/m9.figshare.13534366.v1
title: Additional file 5 of “AI’s gonna have an impact on everything in society, so it has to have an impact on public health”: a fundamental qualitative descriptive study of the implications of artificial intelligence for public health

description: Additional file 5. Specific Participant Characteristics.
DOI: 10.6084/m9.figshare.13534366
title: Additional file 5 of “AI’s gonna have an impact on everything in society, so it has to have an impact on public health”: a fundamental qualitative descriptive study of the implications of artificial intelligence for public health

description: Additional file 5. Specific Participant Characteristics.
DOI: 10.6084/m9.figshare.13534420
title: Additional file 1 of ReportFlow: an application for EEG visualization and reporting using cloud platform

description: Additional file 1. Pseudo-code of the NetworkFlow application according to the role of the user.
DOI: 10.6084/m9.figshare.13534420.v1
title: Additional file 1 of ReportFlow: an application for EEG visualization and reporting using cloud platform

description: Additional file 1. Pseudo-code of the NetworkFlow application according to the role of the user.
DOI: 10.6084/m9.figshare.13534456
title: Additional file 17 of SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions

description: Additional file 17. Table S5: SPServer global Z-scores (ZES3DC, ZPAIR), PROSA (Pair Z-score), DOPE score, GDT_TS, TM score and QCS of the structures of the CASP12 benchmark.
DOI: 10.6084/m9.figshare.13534456.v1
title: Additional file 17 of SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions

description: Additional file 17. Table S5: SPServer global Z-scores (ZES3DC, ZPAIR), PROSA (Pair Z-score), DOPE score, GDT_TS, TM score and QCS of the structures of the CASP12 benchmark.
DOI: 10.21227/knny-b775
title: Sintel 4D Light Field Video Dataset

description: A medium-scale synthetic 4D Light Field video dataset for depth (disparity) estimation. From the open-source movie Sintel.Click here for image samples. (Our project page)===Light Field video:23 synthetic scenes1,204x436 pixels9x9 views (Currently, only the crosshair viewpoints are provided.)20--50 frames Ground-truth disparity values:Provide the values of the central view.The disparity value was obtained by transforming the depth value obtained in Blender.Light Field setup:Rendering with a “clean” pass.The Light Field captured by moving the camera with a baseline of 0.01[m] towards a common focal plane while keeping the optical axes parallel.
DOI: 10.6084/m9.figshare.13534697.v1
title: Additional file 1 of Comparing cost and print time estimates for six commercially-available 3D printers obtained through slicing software for clinically relevant anatomical models

description: Additional file 1. Appendix A.
DOI: 10.6084/m9.figshare.13534700
title: Additional file 2 of Comparing cost and print time estimates for six commercially-available 3D printers obtained through slicing software for clinically relevant anatomical models

description: Additional file 2. Appendix B.
DOI: 10.6084/m9.figshare.13534697
title: Additional file 1 of Comparing cost and print time estimates for six commercially-available 3D printers obtained through slicing software for clinically relevant anatomical models

description: Additional file 1. Appendix A.
DOI: 10.6084/m9.figshare.13534700.v1
title: Additional file 2 of Comparing cost and print time estimates for six commercially-available 3D printers obtained through slicing software for clinically relevant anatomical models

description: Additional file 2. Appendix B.
DOI: 10.6084/m9.figshare.13534702
title: Additional file 1 of Mutation profile of non-small cell lung cancer revealed by next generation sequencing

description: Additional file 1: Table S1. Mutations in five cancer genes in the 72 patients. Table S2. Comparison of driver gene mutations of lung cancer between Taiwanese patients and the Caucasian cohort in TCGA dataset. Table S3. List of trunk mutations of ClinVar pathogenic variants in four paired samples. Table S4. List of trunk and branch mutations of prediction pathogenic variants in four paired samples. Table S5. List of differentially expressed genes with a fold change in expression &gt; 4 in four paired samples. Table S6. Novel mutations in cancer driver genes.
DOI: 10.6084/m9.figshare.13534702.v1
title: Additional file 1 of Mutation profile of non-small cell lung cancer revealed by next generation sequencing

description: Additional file 1: Table S1. Mutations in five cancer genes in the 72 patients. Table S2. Comparison of driver gene mutations of lung cancer between Taiwanese patients and the Caucasian cohort in TCGA dataset. Table S3. List of trunk mutations of ClinVar pathogenic variants in four paired samples. Table S4. List of trunk and branch mutations of prediction pathogenic variants in four paired samples. Table S5. List of differentially expressed genes with a fold change in expression &gt; 4 in four paired samples. Table S6. Novel mutations in cancer driver genes.
DOI: 10.6084/m9.figshare.13534730.v1
title: Additional file 1 of A novel intron mutation in FBN-1 gene identified in a pregnant woman with Marfan syndrome

description: Additional file 1: Supplementary Table 1. Genes associated with thoracic aortic aneurysm and dissection.
DOI: 10.6084/m9.figshare.13534733.v1
title: Additional file 1 of Sex differences in expression of immune elements emerge in children, young adults and mice with osteosarcoma

description: Additional file 1: Supplemental Figure 1. Overall survival for A. All TARGET-OS cases with survival information and B. TARGET-OS cases with gene expression data and survival information. Supplemental Figure 2. Gene expression in TARGET-OS patients. A. Heatmap of all differentially expressed genes (adj. p-value &lt;0.05) identified between male. Supplemental Figure 3. Survival differences among female TARGET-OS cases with high LM22 M2 macrophage scores. Supplemental Table 1. TARGET osteosarcoma gene expression in males compared to females, ranked by adjusted p-value. Supplemental Table 2. Mouse osteosarcoma gene expression in males compared to females, ranked by adjusted p-value (*indicates gene also found significant differentially expressed by sex in TARGET OS). Supplemental Table 3. Healthy adult osteoblast gene expression in males compared to females, ranked by adjusted p-value (GEO: GSE15678) (*indicates gene also found significant differentially expressed by sex in TARGET OS). Supplemental Table 4. TARGET osteosarcoma Ingenuity Pathway Analysis pathways that differed significantly by sex, ranked by p-value. Supplemental Table 5. Ingenuity Pathway Analysis in mice for pathways that differed significantly by sex, ranked by p-value. Supplemental Table 6. Results from TARGET-OS LM22 analysis. Supplemental Table 7. Results from mouse-OS LM22 analysis. Supplemental Table 8. Top 10 GSEA C7 gene sets ranked by FWER for TARGET-OS females and males. Supplemental Table 9. Top 10 GSEA C7 gene sets ranked by FWER for mouse-OS females and males.
DOI: 10.6084/m9.figshare.13534730
title: Additional file 1 of A novel intron mutation in FBN-1 gene identified in a pregnant woman with Marfan syndrome

description: Additional file 1: Supplementary Table 1. Genes associated with thoracic aortic aneurysm and dissection.
DOI: 10.6084/m9.figshare.13534733
title: Additional file 1 of Sex differences in expression of immune elements emerge in children, young adults and mice with osteosarcoma

description: Additional file 1: Supplemental Figure 1. Overall survival for A. All TARGET-OS cases with survival information and B. TARGET-OS cases with gene expression data and survival information. Supplemental Figure 2. Gene expression in TARGET-OS patients. A. Heatmap of all differentially expressed genes (adj. p-value &lt;0.05) identified between male. Supplemental Figure 3. Survival differences among female TARGET-OS cases with high LM22 M2 macrophage scores. Supplemental Table 1. TARGET osteosarcoma gene expression in males compared to females, ranked by adjusted p-value. Supplemental Table 2. Mouse osteosarcoma gene expression in males compared to females, ranked by adjusted p-value (*indicates gene also found significant differentially expressed by sex in TARGET OS). Supplemental Table 3. Healthy adult osteoblast gene expression in males compared to females, ranked by adjusted p-value (GEO: GSE15678) (*indicates gene also found significant differentially expressed by sex in TARGET OS). Supplemental Table 4. TARGET osteosarcoma Ingenuity Pathway Analysis pathways that differed significantly by sex, ranked by p-value. Supplemental Table 5. Ingenuity Pathway Analysis in mice for pathways that differed significantly by sex, ranked by p-value. Supplemental Table 6. Results from TARGET-OS LM22 analysis. Supplemental Table 7. Results from mouse-OS LM22 analysis. Supplemental Table 8. Top 10 GSEA C7 gene sets ranked by FWER for TARGET-OS females and males. Supplemental Table 9. Top 10 GSEA C7 gene sets ranked by FWER for mouse-OS females and males.
DOI: 10.6084/m9.figshare.13534771
title: Additional file 7 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 7: SI_Table_3. SINA alignment results of the most abundant core ASVs in SHNWs.
DOI: 10.6084/m9.figshare.13534771.v1
title: Additional file 7 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 7: SI_Table_3. SINA alignment results of the most abundant core ASVs in SHNWs.
DOI: 10.6084/m9.figshare.13534765
title: Additional file 5 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 5: SI_Table_1. Pairwise Kruskal-Wallis test results for Faith’s phylogenetic diversity metric comparisons between populations.
DOI: 10.6084/m9.figshare.13534777.v1
title: Additional file 9 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 9: SI_File_1. QIIME2 qzv file of taxonomic bar plots per sample.
DOI: 10.6084/m9.figshare.13534765.v1
title: Additional file 5 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 5: SI_Table_1. Pairwise Kruskal-Wallis test results for Faith’s phylogenetic diversity metric comparisons between populations.
DOI: 10.6084/m9.figshare.13534768
title: Additional file 6 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 6: SI_Table_2. Pairwise Kruskal-Wallis test results for observed features (richness) metric comparisons between populations.
DOI: 10.6084/m9.figshare.13534744
title: Additional file 11 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 11: SI_File_3. QIIME2 qzv file of ANCOM test at the ASV level (captive and wild samples).
DOI: 10.6084/m9.figshare.13534774
title: Additional file 8 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 8: SI_Table_4. SourceTracker2 results testing the estimated proportion of faecal bacteria coming from soil. https://doi.org/10.25909/12979157 .
DOI: 10.6084/m9.figshare.13534741.v1
title: Additional file 10 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 10: SI_File_2. QIIME2 qzv file of ANCOM test at family level (captive and wild samples).
DOI: 10.6084/m9.figshare.13534744.v1
title: Additional file 11 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 11: SI_File_3. QIIME2 qzv file of ANCOM test at the ASV level (captive and wild samples).
DOI: 10.6084/m9.figshare.13534741
title: Additional file 10 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 10: SI_File_2. QIIME2 qzv file of ANCOM test at family level (captive and wild samples).
DOI: 10.6084/m9.figshare.13534747.v1
title: Additional file 12 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 12: SI_File_4. QIIME2 qzv file of ANCOM test at family level (between different wild populations).
DOI: 10.6084/m9.figshare.13534774.v1
title: Additional file 8 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 8: SI_Table_4. SourceTracker2 results testing the estimated proportion of faecal bacteria coming from soil. https://doi.org/10.25909/12979157 .
DOI: 10.6084/m9.figshare.13534777
title: Additional file 9 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 9: SI_File_1. QIIME2 qzv file of taxonomic bar plots per sample.
DOI: 10.6084/m9.figshare.13534747
title: Additional file 12 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 12: SI_File_4. QIIME2 qzv file of ANCOM test at family level (between different wild populations).
DOI: 10.6084/m9.figshare.13534750
title: Additional file 13 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 13: SI_File_5. QIIME2 qzv file of ANCOM test at the ASV level (between different wild populations).
DOI: 10.6084/m9.figshare.13534750.v1
title: Additional file 13 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 13: SI_File_5. QIIME2 qzv file of ANCOM test at the ASV level (between different wild populations).
DOI: 10.6084/m9.figshare.13534768.v1
title: Additional file 6 of Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

description: Additional file 6: SI_Table_2. Pairwise Kruskal-Wallis test results for observed features (richness) metric comparisons between populations.
DOI: 10.25912/rdf_1609995816091
title: A causal role for the right Angular Gyrus in Self-Location mediated Perspective Taking
DOI: 10.6084/m9.figshare.13534855
title: Additional file 1 of The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility

description: Additional file 1: Table S1. TBLASTN and BLASTP of homologous structural genes of Pseudomonas aeruginosa T6SS selected. Homologous structural genes of Pseudomonas aeruginosa T6SS selected by TBLASTN (Altschul et al., 1997) against the genomes of Xanthomonas citri subsp. citri str. 306 (Xcc), Xanthomonas euvesicatoria str. 85–10 (Xeu) and Xanthomonas phaseoli pv. manihotis str. CIO151 (Xpm). Similarity of structural genes of Pseudomonas aeruginosa T6SS selected by BLASTP against the genomes of Xanthomonas oryzae pv. oryzae str. PXO 099 (Xoo), Xanthomonas campestris pv. campestris str. ATCC 33913 (Xcac) and Xanthomonas albilineans GPE PC73 (Xalb). Colors follow the same guidelines as in Fig. 1. Table S2. Bacterial strains and plasmids used in this study. Derivative strains of Xanthomonas phaseoli pv. manihotis str. CIO151 (Xpm) with knockouts in T6SS genes. Table S3. List of primers used in this study. Table S4. Analysis of Xanthomonas genomes with or without T6SS genes. Results of BLASTP and ORTHOMCL analyses show that the reconstructed T6SS clusters in Xanthomonas contain between twelve and sixteen genes. Table S5. Structural genes of type VI secretion system of Xanthomonas. Distribution of type VI secretion system gene clusters in 14 strains of Xanthomonas. For each strain of Xanthomonas, the genes found in T6SS are divided by clusters (I, II and II) and are shown with gene, protein and product sizes. Table S6. Results of the search for T6SS-encoding genes in the genomes of Xanthomonas perforans (Xp 91–118), Xanthomonas cassavae str. CFBP4642 and Xanthomonas axonopodis str. 29 with EDGAR 2.0. EDGAR displays the orthologous genes in each genome. For each gene, the nomenclature and annotation are denoted. Table S7. Localization, protein family and motif prediction of T6SS proteins in Xpm. The core proteins of T6SS were subjected to in silico analyses for subcellular localization using PSORT, prediction of transmembrane domains (TMpred), domain prediction (INTERPRO, CDD and PRODOM) and protein families (Pfam) and motifs (Motif finder and MOTIF search). The colors follow the same guidelines as in Fig. 1. Table S8. Insertion sequences in the T6SS. The clusters of the T6SS of Xeu, Xcc3 and Xpm were examined for IS families and groups, defined in the database ISfinder [31].
DOI: 10.6084/m9.figshare.13534855.v1
title: Additional file 1 of The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility

description: Additional file 1: Table S1. TBLASTN and BLASTP of homologous structural genes of Pseudomonas aeruginosa T6SS selected. Homologous structural genes of Pseudomonas aeruginosa T6SS selected by TBLASTN (Altschul et al., 1997) against the genomes of Xanthomonas citri subsp. citri str. 306 (Xcc), Xanthomonas euvesicatoria str. 85–10 (Xeu) and Xanthomonas phaseoli pv. manihotis str. CIO151 (Xpm). Similarity of structural genes of Pseudomonas aeruginosa T6SS selected by BLASTP against the genomes of Xanthomonas oryzae pv. oryzae str. PXO 099 (Xoo), Xanthomonas campestris pv. campestris str. ATCC 33913 (Xcac) and Xanthomonas albilineans GPE PC73 (Xalb). Colors follow the same guidelines as in Fig. 1. Table S2. Bacterial strains and plasmids used in this study. Derivative strains of Xanthomonas phaseoli pv. manihotis str. CIO151 (Xpm) with knockouts in T6SS genes. Table S3. List of primers used in this study. Table S4. Analysis of Xanthomonas genomes with or without T6SS genes. Results of BLASTP and ORTHOMCL analyses show that the reconstructed T6SS clusters in Xanthomonas contain between twelve and sixteen genes. Table S5. Structural genes of type VI secretion system of Xanthomonas. Distribution of type VI secretion system gene clusters in 14 strains of Xanthomonas. For each strain of Xanthomonas, the genes found in T6SS are divided by clusters (I, II and II) and are shown with gene, protein and product sizes. Table S6. Results of the search for T6SS-encoding genes in the genomes of Xanthomonas perforans (Xp 91–118), Xanthomonas cassavae str. CFBP4642 and Xanthomonas axonopodis str. 29 with EDGAR 2.0. EDGAR displays the orthologous genes in each genome. For each gene, the nomenclature and annotation are denoted. Table S7. Localization, protein family and motif prediction of T6SS proteins in Xpm. The core proteins of T6SS were subjected to in silico analyses for subcellular localization using PSORT, prediction of transmembrane domains (TMpred), domain prediction (INTERPRO, CDD and PRODOM) and protein families (Pfam) and motifs (Motif finder and MOTIF search). The colors follow the same guidelines as in Fig. 1. Table S8. Insertion sequences in the T6SS. The clusters of the T6SS of Xeu, Xcc3 and Xpm were examined for IS families and groups, defined in the database ISfinder [31].
DOI: 10.6084/m9.figshare.13534964.v1
title: Additional file 2 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 2. Completeness of Thai cat pedigrees. R script for analysing pedigree completeness per generation for males and females separately.
DOI: 10.6084/m9.figshare.13534970
title: Additional file 4 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 4. Historic development of mean kinship and inbreeding. R script to calculate and plot historic kinship and inbreeding of the Oriental Shorthair breed, between 1955 and 1999, using Additional file 1 as input.
DOI: 10.6084/m9.figshare.13534961.v1
title: Additional file 1 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 1. Collected traditional Siamese pedigree data. Pseudonymized version (December 2018). Breeds are recoded using the EMS abbreviations. Unfortunately, the country of origin is registered together with the pedigree name. This information gets lost upon recoding pedigree names to numeric data.
DOI: 10.6084/m9.figshare.13534973
title: Additional file 5 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 5. Comparison of distribution of mean kinship and inbreeding. R script to plot the distribution of kinship and inbreeding coefficients of the Thai and Siamese breeds, using Additional file 1 as input. This produces Fig. 4.
DOI: 10.5067/viirs/vnp46a1g_nrt.001
title: VIIRS/NPP Hourly Cumulative Gridded Day Night Band 500m Linear Lat Lon Grid Night NRT
DOI: 10.6084/m9.figshare.13534982.v1
title: Additional file 8 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 8. Historic breed composition of the Thai breed. R script for analysing the contribution of other breeds to the Thai breed.
DOI: 10.6084/m9.figshare.13534967.v1
title: Additional file 3 of Statistical analysis in support of maintaining a healthy traditional Siamese cat population

description: Additional file 3. Historic development of mean kinship and inbreeding. R script to calculate and plot historic kinship and inbreeding of the Thai and Siamese breeds, using. Additional file 1 as input. This produces Figs. 2 and 3. It runs overnight and requires at least 12 GByte RAM. If more resources are available, alternative optiSel functions can be used to yield a more compact code.