cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8426168.v1
title: Additional file 3: of Transcriptomic response in symptomless roots of clubroot infected kohlrabi (Brassica oleracea var. gongylodes) mirrors resistant plants

description: Kohlrabi cell wall metabolism heatmaps including transcript identifiers and cluster dendrograms. Leading zeroes were added to the gene identifier for better visualization. Additional data for each individual heatmap is provided in individual spreadsheets. Log2 fold change values and additional annotation information are given. These spreadsheets include also non-differentially expressed genes not plotted in the heatmaps. n. s.: not significantly differentially expressed. (ODS 1488 kb)
DOI: 10.6084/m9.figshare.8426132
title: Additional file 4: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Predicted motif sequences for lamprey PRs using the Scansite cell signaling interactions prediction â MotifScanâ module. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8426141
title: Additional file 6: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Gene location of mPR and MAPR genes in sea lamprey and Japanese lamprey. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.8426132.v1
title: Additional file 4: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Predicted motif sequences for lamprey PRs using the Scansite cell signaling interactions prediction â MotifScanâ module. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8426141.v1
title: Additional file 6: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Gene location of mPR and MAPR genes in sea lamprey and Japanese lamprey. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.8426117
title: Additional file 2: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Species selected for phylogenetic analyses of nPR, mPR and MAPR genes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8426114
title: Additional file 1: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Sequences of nPR, mPR and MAPR genes identified in Japanese lamprey. (TXT 11 kb)
DOI: 10.6084/m9.figshare.8426117.v1
title: Additional file 2: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Species selected for phylogenetic analyses of nPR, mPR and MAPR genes. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8426114.v1
title: Additional file 1: of Genomic sequence analyses of classical and non-classical lamprey progesterone receptor genes and the inference of homologous gene evolution in metazoans

description: Sequences of nPR, mPR and MAPR genes identified in Japanese lamprey. (TXT 11 kb)
DOI: 10.6084/m9.figshare.8426108
title: Additional file 2: of Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

description: Supplementary Tables S1, S13 and S14. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.8426108.v1
title: Additional file 2: of Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

description: Supplementary Tables S1, S13 and S14. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.8426024
title: MOESM5 of Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

description: Additional file 5: Table S4. Gene ontology (GO) terms and KEGG pathways for genes selected by AWM. Name, description and list of genes of the gene ontology terms and KEGG pathways identified in the gene network analysis.
DOI: 10.6084/m9.figshare.8426024.v1
title: MOESM5 of Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

description: Additional file 5: Table S4. Gene ontology (GO) terms and KEGG pathways for genes selected by AWM. Name, description and list of genes of the gene ontology terms and KEGG pathways identified in the gene network analysis.
DOI: 10.6084/m9.figshare.8426018
title: MOESM1 of Co-administration of a Rhododendron tomentosum extract does not affect mercury tissue concentrations and excretion rate in methylmercury-treated adult male rats

description: Additional file 1. Additional file contains all the raw data on rat body weight gains, organ weights, hematology, antibody isotyping, liver functions and mercury quantification presented in this manuscript.
DOI: 10.6084/m9.figshare.8426015
title: MOESM4 of Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

description: Additional file 4: Table S3. Description of the 736 genes selected by the gene network analysis for milk cheese-making and composition traits. Name and position of candidate genes identified by AWM.
DOI: 10.6084/m9.figshare.8426015.v1
title: MOESM4 of Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

description: Additional file 4: Table S3. Description of the 736 genes selected by the gene network analysis for milk cheese-making and composition traits. Name and position of candidate genes identified by AWM.
DOI: 10.6084/m9.figshare.8426018.v1
title: MOESM1 of Co-administration of a Rhododendron tomentosum extract does not affect mercury tissue concentrations and excretion rate in methylmercury-treated adult male rats

description: Additional file 1. Additional file contains all the raw data on rat body weight gains, organ weights, hematology, antibody isotyping, liver functions and mercury quantification presented in this manuscript.
DOI: 10.6084/m9.figshare.8426006
title: MOESM2 of Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

description: Additional file 2: Table S1. Description of the 264 genes located in confidence intervals of the QTL detected by GWAS for milk cheese-making and composition traits. Name and position of candidate genes identified by GWAS.
DOI: 10.6084/m9.figshare.8426006.v1
title: MOESM2 of Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows

description: Additional file 2: Table S1. Description of the 264 genes located in confidence intervals of the QTL detected by GWAS for milk cheese-making and composition traits. Name and position of candidate genes identified by GWAS.
DOI: 10.6084/m9.figshare.8425991
title: Additional file 1: of Adverse effects of xenogenic scaffolding in the context of a randomized double-blind placebo-controlled study for repairing full-thickness rotator cuff tears

description: Report of Orthadapt adverse events. (XLS 269 kb)
DOI: 10.6084/m9.figshare.8425991.v1
title: Additional file 1: of Adverse effects of xenogenic scaffolding in the context of a randomized double-blind placebo-controlled study for repairing full-thickness rotator cuff tears

description: Report of Orthadapt adverse events. (XLS 269 kb)
DOI: 10.6084/m9.figshare.8425961
title: Additional file 5: of Are interventions focused on gender-norms effective in preventing domestic violence against women in low and lower-middle income countries? A systematic review and meta-analysis

description: The extracted data stored on Microsoft Excel sheet for met-analysis. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8425961.v1
title: Additional file 5: of Are interventions focused on gender-norms effective in preventing domestic violence against women in low and lower-middle income countries? A systematic review and meta-analysis

description: The extracted data stored on Microsoft Excel sheet for met-analysis. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8425955
title: Additional file 4: of Are interventions focused on gender-norms effective in preventing domestic violence against women in low and lower-middle income countries? A systematic review and meta-analysis

description: 4-1 Heterogeneity between studies illustration using funnel plot. 4-2 Risk of bias (ROB) assessment. (ZIP 69 kb)
DOI: 10.6084/m9.figshare.8425955.v1
title: Additional file 4: of Are interventions focused on gender-norms effective in preventing domestic violence against women in low and lower-middle income countries? A systematic review and meta-analysis

description: 4-1 Heterogeneity between studies illustration using funnel plot. 4-2 Risk of bias (ROB) assessment. (ZIP 69 kb)
DOI: 10.6084/m9.figshare.8425937
title: Additional file 2: of Are interventions focused on gender-norms effective in preventing domestic violence against women in low and lower-middle income countries? A systematic review and meta-analysis

description: 2-1 & 2-1-1: Searching strategy on PubMed database. 2-2 Searching strategy on Medline database. 2-3 Searching strategy on EMBASE database. 2-4 Searching strategy on CNHAL database. (ZIP 2206 kb)
DOI: 10.6084/m9.figshare.8425937.v1
title: Additional file 2: of Are interventions focused on gender-norms effective in preventing domestic violence against women in low and lower-middle income countries? A systematic review and meta-analysis

description: 2-1 & 2-1-1: Searching strategy on PubMed database. 2-2 Searching strategy on Medline database. 2-3 Searching strategy on EMBASE database. 2-4 Searching strategy on CNHAL database. (ZIP 2206 kb)
DOI: 10.6084/m9.figshare.8425886
title: Additional file 3: of PULSE-I - Is rePetitive Upper Limb SEnsory stimulation early after stroke feasible and acceptable? A stratified single-blinded randomised controlled feasibility study

description: Anonymised data used during the analysis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8425883
title: Additional file 2: of PULSE-I - Is rePetitive Upper Limb SEnsory stimulation early after stroke feasible and acceptable? A stratified single-blinded randomised controlled feasibility study

description: Figure S1. A: Waterfall plot: changes in the Action Research Arm Test (ARAT) score in the repetitive sensory stimulation (RSS) group at 3 months compared to baseline. B: Waterfall plot: changes in the ARAT score in the standard therapy group at 3 months compared to baseline. (ZIP 340 kb)
DOI: 10.6084/m9.figshare.8425883.v1
title: Additional file 2: of PULSE-I - Is rePetitive Upper Limb SEnsory stimulation early after stroke feasible and acceptable? A stratified single-blinded randomised controlled feasibility study

description: Figure S1. A: Waterfall plot: changes in the Action Research Arm Test (ARAT) score in the repetitive sensory stimulation (RSS) group at 3 months compared to baseline. B: Waterfall plot: changes in the ARAT score in the standard therapy group at 3 months compared to baseline. (ZIP 340 kb)
DOI: 10.6084/m9.figshare.8425877
title: Additional file 3: of Biological and toxicological evaluation of Rhus trilobata Nutt. (Anacardiaceae) used traditionally in mexico against cancer

description: Table S1. Phytochemical compounds putatively identified in RHTR by UPLC-MSE. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.8425886.v1
title: Additional file 3: of PULSE-I - Is rePetitive Upper Limb SEnsory stimulation early after stroke feasible and acceptable? A stratified single-blinded randomised controlled feasibility study

description: Anonymised data used during the analysis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8425877.v1
title: Additional file 3: of Biological and toxicological evaluation of Rhus trilobata Nutt. (Anacardiaceae) used traditionally in mexico against cancer

description: Table S1. Phytochemical compounds putatively identified in RHTR by UPLC-MSE. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.8424950.v2
title: An atlas of chromatin accessibility and transcriptional changes in BmNPV infected Bombyx mori cells

description: A comprehensive information of ATAC-seq and RNA-seq datasets in BmNPV infected Bombyx mori cells is significant for understanding the host response to DNA virus infection in chromatin accessibility and gene expression. Here, we describe the ATAC-seq data FastQC reports, fragments length, reads enrichment around transcription start sites, and correlation between biological replicates indicated the reliable quality of the ATAC-seq dataset. Meanwhile, the RNA-seq data FastQC reports, reproducibility between replicates, differential expressed gene profiles, and count matrix were also demonstrated the high quality of the RNA-seq dataset.
DOI: 10.6084/m9.figshare.8424950.v1
title: An atlas of chromatin accessibility and transcriptional changes in BmNPV infected Bombyx mori cells

description: A comprehensive information of ATAC-seq and RNA-seq datasets in BmNPV infected Bombyx mori cells is significant for understanding the host response to DNA virus infection in chromatin accessibility and gene expression. Here, we describe the ATAC-seq data FastQC reports, fragments length, reads enrichment around transcription start sites, and correlation between biological replicates indicated the reliable quality of the ATAC-seq dataset. Meanwhile, the RNA-seq data FastQC reports, reproducibility between replicates, differential expressed gene profiles, and count matrix were also demonstrated the high quality of the RNA-seq dataset.
DOI: 10.6084/m9.figshare.8411945
title: Forest Structural Integrity Index

description: GeoTIFF representing an index of forest structural integrity across the moist broadleaf biome of the humid tropics in South America, Africa, and Asia.
DOI: 10.6084/m9.figshare.8411918
title: Metadata for Iida et al. 2019 Oecologia

description: Original dataset of demography and traits in Iida et al. 2019, Oecologiahttps://doi.org/10.1007/s00442-019-04531-9
DOI: 10.6084/m9.figshare.8411945.v1
title: Forest Structural Integrity Index

description: GeoTIFF representing an index of forest structural integrity across the moist broadleaf biome of the humid tropics in South America, Africa, and Asia.
DOI: 10.6084/m9.figshare.8411900
title: Canopy Height - Asia

description: GeoTIFF representing canopy height for the moist broadleaf biome of the humid tropics in Asia. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.23641/asha.8411876
title: Vowel duration discrimination of children with CAS (Ingram et al., 2019)

description: <b>Purpose: </b>The ability of 5- and 6-year-old male children (23 participants) between the chronological ages of 5;0 and 6;11(years;months) with childhood apraxia of speech (CAS; <i>n</i> = 9) and with typical development (TD; <i>n</i> = 14) to detect differences in vowel duration of syllable pairs is explored. We asked whether the children with CAS show different patterns of performance on the vowel duration difference experimental task than those of their similarly aged peers with TD.<b>Method: </b>A male adult audio-recorded the syllable /bɑ/. The /ɑ/ was digitally lengthened and shortened, while maintaining uniform fundamental frequency and amplitude of the vowel and duration of the consonant /b/ at 42 ms. Vowel lengths increased in 40-ms increments, ranging from 208 to 488 ms. Eight pairs of syllables, 1 with equal length and 7 with differing vowel lengths, were randomly presented to the children 10 times in blocks of 16 pairs via a computer application.<b>Results: </b>Numerous complementary analyses indicated patterns of performance differed for children with CAS compared to the children with TD. The children with CAS were notably less accurate in their duration discrimination and evidenced greater variability in their performances across duration difference conditions than their peers with TD, signifying they were generally challenged to discriminate the vowel duration differences.<b>Conclusion: </b>These results suggest that CAS, which is more generally considered a motor speech disorder, may have a perceptual component of CAS related to vowel duration discrimination. Further research directions and clinical implications are discussed.<br><b>Supplemental Material S1.</b> Individual child performances on the comprehensive assessment battery for children with typical development (TD) and childhood apraxia of speech (CAS).<br>Ingram, S. B., Reed, V. A., & Powell, T. W. (2019). Vowel duration discrimination of children with childhood apraxia of speech: A preliminary study. <i>American Journal of Speech-Language Pathology, 28</i>, 857–874.<br><b>Publisher Note:</b> This article is part of the Special Issue: Selected Papers From the 2018 Conference on Motor Speech—Clinical Science and Innovations.
DOI: 10.23641/asha.8411876.v1
title: Vowel duration discrimination of children with CAS (Ingram et al., 2019)

description: <b>Purpose: </b>The ability of 5- and 6-year-old male children (23 participants) between the chronological ages of 5;0 and 6;11(years;months) with childhood apraxia of speech (CAS; <i>n</i> = 9) and with typical development (TD; <i>n</i> = 14) to detect differences in vowel duration of syllable pairs is explored. We asked whether the children with CAS show different patterns of performance on the vowel duration difference experimental task than those of their similarly aged peers with TD.<b>Method: </b>A male adult audio-recorded the syllable /bɑ/. The /ɑ/ was digitally lengthened and shortened, while maintaining uniform fundamental frequency and amplitude of the vowel and duration of the consonant /b/ at 42 ms. Vowel lengths increased in 40-ms increments, ranging from 208 to 488 ms. Eight pairs of syllables, 1 with equal length and 7 with differing vowel lengths, were randomly presented to the children 10 times in blocks of 16 pairs via a computer application.<b>Results: </b>Numerous complementary analyses indicated patterns of performance differed for children with CAS compared to the children with TD. The children with CAS were notably less accurate in their duration discrimination and evidenced greater variability in their performances across duration difference conditions than their peers with TD, signifying they were generally challenged to discriminate the vowel duration differences.<b>Conclusion: </b>These results suggest that CAS, which is more generally considered a motor speech disorder, may have a perceptual component of CAS related to vowel duration discrimination. Further research directions and clinical implications are discussed.<br><b>Supplemental Material S1.</b> Individual child performances on the comprehensive assessment battery for children with typical development (TD) and childhood apraxia of speech (CAS).<br>Ingram, S. B., Reed, V. A., & Powell, T. W. (2019). Vowel duration discrimination of children with childhood apraxia of speech: A preliminary study. <i>American Journal of Speech-Language Pathology, 28</i>, 857–874.<br><b>Publisher Note:</b> This article is part of the Special Issue: Selected Papers From the 2018 Conference on Motor Speech—Clinical Science and Innovations.
DOI: 10.6084/m9.figshare.8411918.v1
title: Metadata for Iida et al. 2019 Oecologia

description: Original dataset of demography and traits in Iida et al. 2019, Oecologiahttps://doi.org/10.1007/s00442-019-04531-9
DOI: 10.6084/m9.figshare.8411918.v3
title: Metadata for Iida et al. 2019 Oecologia

description: Original dataset of demography and traits in Iida et al. 2019, Oecologiahttps://doi.org/10.1007/s00442-019-04531-9
DOI: 10.6084/m9.figshare.8411870
title: Canopy Height - South America

description: GeoTIFF representing canopy height for the moist broadleaf biome of the humid tropics in South America. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411918.v2
title: Metadata for Iida et al. 2019 Oecologia

description: Original dataset of demography and traits in Iida et al. 2019, Oecologiahttps://doi.org/10.1007/s00442-019-04531-9
DOI: 10.6084/m9.figshare.8411864
title: Alignment of archaeal marker genes

description: FASTA file of the alignment underlying the phylogenetic tree that appears in Figure 3 of Santoro et al. 2019. The alignment is constructed from 32 concatenated proteins from 1360 archaeal genomes, including metagenome-assembled genomes, single-cell genomes, and cultivated isolates obtained from NCBI GenBank and the Joint Genome Institute's Integrated Microbial Genomes (IMG) portal. Phylogenetic markers were selected using hmmsearch against AMPHORA2 markers.
DOI: 10.6084/m9.figshare.8411870.v1
title: Canopy Height - South America

description: GeoTIFF representing canopy height for the moist broadleaf biome of the humid tropics in South America. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411858
title: Canopy Cover - South America

description: GeoTIFF representing canopy cover for the moist broadleaf biome of the humid tropics in South America. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411858.v1
title: Canopy Cover - South America

description: GeoTIFF representing canopy cover for the moist broadleaf biome of the humid tropics in South America. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411864.v1
title: Alignment of archaeal marker genes

description: FASTA file of the alignment underlying the phylogenetic tree that appears in Figure 3 of Santoro et al. 2019. The alignment is constructed from 32 concatenated proteins from 1360 archaeal genomes, including metagenome-assembled genomes, single-cell genomes, and cultivated isolates obtained from NCBI GenBank and the Joint Genome Institute's Integrated Microbial Genomes (IMG) portal. Phylogenetic markers were selected using hmmsearch against AMPHORA2 markers.
DOI: 10.6084/m9.figshare.8411783
title: Human Footprint

description: GeoTIFF representing the 'human footprint' across the moist broadleaf biome of the humid tropics across South America, Africa and Asia. This layer is used as an input into the derivation of the forest structural integrity index.
DOI: 10.6084/m9.figshare.8411780
title: Canopy Cover - Asia

description: GeoTIFF representing canopy cover for the moist broadleaf biome of the humid tropics in Asia. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411783.v1
title: Human Footprint

description: GeoTIFF representing the 'human footprint' across the moist broadleaf biome of the humid tropics across South America, Africa and Asia. This layer is used as an input into the derivation of the forest structural integrity index.
DOI: 10.6084/m9.figshare.8411777
title: Year Loss

description: GeoTIFF representing loss year for the moist broadleaf biome of the humid tropics in South America, Africa and Asia. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411780.v1
title: Canopy Cover - Asia

description: GeoTIFF representing canopy cover for the moist broadleaf biome of the humid tropics in Asia. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411765
title: Canopy Height - Africa

description: GeoTIFF representing canopy height for the moist broadleaf biome of the humid tropics in Africa. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index