cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15156002
title: CaronMoysiukRcode.R from A giant nektobenthic radiodont from the Burgess Shale and the significance of hurdiid carapace diversity

description: Radiodonts, stem-group euarthropods that evolved during the Cambrian explosion, were among the largest and most diversified lower palaeozoic predators. These animals were widespread geographically, occupying a variety of ecological niches, from benthic foragers to nektonic suspension feeders and apex predators. Here, we describe the largest Cambrian hurdiid radiodont known so far, <i>Titanokorys gainesi</i>, gen. et sp. nov., from the Burgess Shale (Marble Canyon, Kootenay National Park, British Columbia). Estimated to reach half-a-meter in length, this new species bears a very large ovoid-shaped central carapace with distinct short posterolateral processes and an anterior spine. Geometric morphometric analyses highlight the high diversity of carapace shapes in hurdiids and show that <i>Titanokorys</i> bridges a morphological gap between forms with long and short carapaces. Carapace shape, however, is prone to homoplasy and shows no consistent relationship with trophic ecology, as demonstrated by new data, including a reappraisal of the poorly known <i>Pahvantia</i>. Despite distinct carapaces, <i>Titanokorys</i> shares similar rake-like appendages for sediment-sifting with <i>Cambroraster,</i> a smaller but much more abundant sympatric hurdiid from the Burgess Shale<i>.</i> The co-occurrence of these two species on the same bedding planes highlights the potential competition for benthic resources and the high diversity of large predators sustained by Cambrian communities.
DOI: 10.6084/m9.figshare.15156005.v1
title: Titanokorys_disc.tnt from A giant nektobenthic radiodont from the Burgess Shale and the significance of hurdiid carapace diversity

description: Radiodonts, stem-group euarthropods that evolved during the Cambrian explosion, were among the largest and most diversified lower palaeozoic predators. These animals were widespread geographically, occupying a variety of ecological niches, from benthic foragers to nektonic suspension feeders and apex predators. Here, we describe the largest Cambrian hurdiid radiodont known so far, <i>Titanokorys gainesi</i>, gen. et sp. nov., from the Burgess Shale (Marble Canyon, Kootenay National Park, British Columbia). Estimated to reach half-a-meter in length, this new species bears a very large ovoid-shaped central carapace with distinct short posterolateral processes and an anterior spine. Geometric morphometric analyses highlight the high diversity of carapace shapes in hurdiids and show that <i>Titanokorys</i> bridges a morphological gap between forms with long and short carapaces. Carapace shape, however, is prone to homoplasy and shows no consistent relationship with trophic ecology, as demonstrated by new data, including a reappraisal of the poorly known <i>Pahvantia</i>. Despite distinct carapaces, <i>Titanokorys</i> shares similar rake-like appendages for sediment-sifting with <i>Cambroraster,</i> a smaller but much more abundant sympatric hurdiid from the Burgess Shale<i>.</i> The co-occurrence of these two species on the same bedding planes highlights the potential competition for benthic resources and the high diversity of large predators sustained by Cambrian communities.
DOI: 10.6084/m9.figshare.15156002.v1
title: CaronMoysiukRcode.R from A giant nektobenthic radiodont from the Burgess Shale and the significance of hurdiid carapace diversity

description: Radiodonts, stem-group euarthropods that evolved during the Cambrian explosion, were among the largest and most diversified lower palaeozoic predators. These animals were widespread geographically, occupying a variety of ecological niches, from benthic foragers to nektonic suspension feeders and apex predators. Here, we describe the largest Cambrian hurdiid radiodont known so far, <i>Titanokorys gainesi</i>, gen. et sp. nov., from the Burgess Shale (Marble Canyon, Kootenay National Park, British Columbia). Estimated to reach half-a-meter in length, this new species bears a very large ovoid-shaped central carapace with distinct short posterolateral processes and an anterior spine. Geometric morphometric analyses highlight the high diversity of carapace shapes in hurdiids and show that <i>Titanokorys</i> bridges a morphological gap between forms with long and short carapaces. Carapace shape, however, is prone to homoplasy and shows no consistent relationship with trophic ecology, as demonstrated by new data, including a reappraisal of the poorly known <i>Pahvantia</i>. Despite distinct carapaces, <i>Titanokorys</i> shares similar rake-like appendages for sediment-sifting with <i>Cambroraster,</i> a smaller but much more abundant sympatric hurdiid from the Burgess Shale<i>.</i> The co-occurrence of these two species on the same bedding planes highlights the potential competition for benthic resources and the high diversity of large predators sustained by Cambrian communities.
DOI: 10.6084/m9.figshare.15156005
title: Titanokorys_disc.tnt from A giant nektobenthic radiodont from the Burgess Shale and the significance of hurdiid carapace diversity

description: Radiodonts, stem-group euarthropods that evolved during the Cambrian explosion, were among the largest and most diversified lower palaeozoic predators. These animals were widespread geographically, occupying a variety of ecological niches, from benthic foragers to nektonic suspension feeders and apex predators. Here, we describe the largest Cambrian hurdiid radiodont known so far, <i>Titanokorys gainesi</i>, gen. et sp. nov., from the Burgess Shale (Marble Canyon, Kootenay National Park, British Columbia). Estimated to reach half-a-meter in length, this new species bears a very large ovoid-shaped central carapace with distinct short posterolateral processes and an anterior spine. Geometric morphometric analyses highlight the high diversity of carapace shapes in hurdiids and show that <i>Titanokorys</i> bridges a morphological gap between forms with long and short carapaces. Carapace shape, however, is prone to homoplasy and shows no consistent relationship with trophic ecology, as demonstrated by new data, including a reappraisal of the poorly known <i>Pahvantia</i>. Despite distinct carapaces, <i>Titanokorys</i> shares similar rake-like appendages for sediment-sifting with <i>Cambroraster,</i> a smaller but much more abundant sympatric hurdiid from the Burgess Shale<i>.</i> The co-occurrence of these two species on the same bedding planes highlights the potential competition for benthic resources and the high diversity of large predators sustained by Cambrian communities.
DOI: 10.5255/ukda-sn-854612
title: Anti-Microbials in Society - Uganda Study, 2017-2021

description: The AMIS Project Uganda is an anthropological research project aimed at better understanding the use of antimicrobials in Ugandan society. The study used a mixed-methods approach to investigate the roles and context of antimicrobials in daily life in Tororo, Wakiso and Kampala districts from the perspective of health care providers, farmers and day wage urban workers. The data collection includes field-note and contact summaries, in-depth interview transcripts, key informant interview transcripts, medicines surveys, oral histories, and participant feedback dialogues.
DOI: 10.25345/c55k0x
title: MassIVE MSV000087974 - GNPS_QC1_False_Discovery_Rate_ESI_positive
title: Trial upload to determine false discovery rate of four annotation workflow
DOI: 10.6084/m9.figshare.15155889.v1
title: Untitled Item

description: Orthologous genes across Symbiodiniaceae clades were identified through OrthoFinder (Emms et al., 2019).<br>
DOI: 10.6084/m9.figshare.13689883
title: Environmental data

description: Environmental data from bark beetle infested forests<br>
DOI: 10.6084/m9.figshare.13689883.v1
title: Environmental data

description: Environmental data from bark beetle infested forests<br>
DOI: 10.5281/zenodo.5185912
title: SARS-CoV-2 TREE DATA

description: Demo
DOI: 10.5281/zenodo.5185911
title: SARS-CoV-2 TREE DATA

description: Demo
DOI: 10.6084/m9.figshare.13689772
title: Arthropods_Metabarcoding

description: Metabarcoding data of arthropod mixed samples from bark bettle infested forests<br>
DOI: 10.6084/m9.figshare.13689772.v1
title: Arthropods_Metabarcoding

description: Metabarcoding data of arthropod mixed samples from bark bettle infested forests<br>
DOI: 10.5281/zenodo.5186176
title: Matchms and PubChem cleaned MS/MS dataset from GNPS

description: Dataset of MS/MS spectra retrieved from GNPS (https://gnps.ucsd.edu) on 25/01/2021, which underwent extensive metadata cleaning. Version v1 contained a bug (missing "NUM PEAKS" parameters), this was corrected in version v2. Metadata was cleaned and processed using matchms (https://github.com/matchms/matchms) and matchmsextras (https://github.com/matchms/matchmsextras). This largely consited of Empty spectra were removed. Compound names were cleaned charge, adduct, formula, ionmode fields were cleaned and corrected parent mass estimated were added (using precursor mz and adduct information) inchikey, inchi, and SMILES were checked and corrected Spectra which remained without inchi/inchikey/smiles were searched against pubchem based on their mass and name. This resulted in 210,400 spectra out of which 184,698 are annotated with InChIKey and SMILES and/or InChI. If you use this dataset for your research please cite the following: GNPS, e.g. [Wang, M. <em>et al.</em> Sharing and community curation of mass spectrometry data with GNPS. <em>Nat. Biotechnol. </em><strong>34</strong>, 828–837 (2016)] matchms: [ Huber, F. <em>et al.</em> matchms - processing and similarity evaluation of mass spectrometry data. <em>J. Open Source Softw. </em><strong>5</strong>, 2411 (2020) ] PubChem: [ Kim, S. <em>et al.</em> PubChem 2019 update: improved access to chemical data. <em>Nucleic Acids Res. </em><strong>47</strong>, D1102–D1109 (2019)] Many thanks!
DOI: 10.5281/zenodo.4699299
title: Matchms and PubChem cleaned MS/MS dataset from GNPS

description: Dataset of MS/MS spectra retrieved from GNPS (https://gnps.ucsd.edu) on 25/01/2021, which underwent extensive metadata cleaning. Version v1 contained a bug (missing "NUM PEAKS" parameters), this was corrected in version v2. Metadata was cleaned and processed using matchms (https://github.com/matchms/matchms) and matchmsextras (https://github.com/matchms/matchmsextras). This largely consited of Empty spectra were removed. Compound names were cleaned charge, adduct, formula, ionmode fields were cleaned and corrected parent mass estimated were added (using precursor mz and adduct information) inchikey, inchi, and SMILES were checked and corrected Spectra which remained without inchi/inchikey/smiles were searched against pubchem based on their mass and name. This resulted in 210,400 spectra out of which 184,698 are annotated with InChIKey and SMILES and/or InChI. If you use this dataset for your research please cite the following: GNPS, e.g. [Wang, M. <em>et al.</em> Sharing and community curation of mass spectrometry data with GNPS. <em>Nat. Biotechnol. </em><strong>34</strong>, 828–837 (2016)] matchms: [ Huber, F. <em>et al.</em> matchms - processing and similarity evaluation of mass spectrometry data. <em>J. Open Source Softw. </em><strong>5</strong>, 2411 (2020) ] PubChem: [ Kim, S. <em>et al.</em> PubChem 2019 update: improved access to chemical data. <em>Nucleic Acids Res. </em><strong>47</strong>, D1102–D1109 (2019)] Many thanks!
DOI: 10.25430/researchdata.cab.unipd.it.00000527
title: Relative numerical middle in rhesus monkeys

description: Animals show vast numerical competence in tasks that require both ordinal and cardinal numerical representations, but few studies have addressed whether animals can identify the numerical middle in a sequence. Two rhesus monkeys (Macaca mulatta) learned to select the middle dot in a horizontal sequence of three dots on a touchscreen. When subsequently presented with longer sequences composed of 5, 7 or 9 items, monkeys transferred the middle rule. Accuracy decreased as the length of the sequence increased. In a second test, we presented monkeys with asymmetrical sequences composed by nine items, where the numerical and spatial middle were distinct and both monkeys selected the numerical middle over the spatial middle. Our results demonstrate that rhesus macaques can extract an abstract rule to bisect a discrete set of items.
DOI: 10.15161/oar.it/74019
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.5181385
title: Metagenome-assembled genomes(MAGs) generated from dog gut (PRJEB20308).

description: MAGs generated from dog gut (PRJEB20308) with Maxbin2, VAMB, Metabat2, SemiBin(single-sample binning) and VAMB, SemiBin(multi-sample binning). Single-sample binning: Maxbin2.tar.gz, Metabat2.tar.gz, VAMB.tar.gz and SemiBin(_pretrain).tar.gz. Multi-sample binning: VAMB_multi.tar.gz and SemiBin_multi.tar.gz.
DOI: 10.5281/zenodo.5181384
title: Metagenome-assembled genomes(MAGs) generated from dog gut (PRJEB20308).

description: MAGs generated from dog gut (PRJEB20308) with Maxbin2, VAMB, Metabat2, SemiBin(single-sample binning) and VAMB, SemiBin(multi-sample binning). Single-sample binning: Maxbin2.tar.gz, Metabat2.tar.gz, VAMB.tar.gz and SemiBin(_pretrain).tar.gz. Multi-sample binning: VAMB_multi.tar.gz and SemiBin_multi.tar.gz.
DOI: 10.5517/ccdc.csd.cc2860m4
title: CCDC 2091155: Experimental Crystal Structure Determination

description: Related Article: Yixiu Ge, Zaozao Qiu, Zuowei Xie|2021|Chem.Commun.|57|8071|doi:10.1039/D1CC03449A
DOI: 10.5517/ccdc.csd.cc2860n5
title: CCDC 2091156: Experimental Crystal Structure Determination

description: Related Article: Yixiu Ge, Zaozao Qiu, Zuowei Xie|2021|Chem.Commun.|57|8071|doi:10.1039/D1CC03449A
DOI: 10.5517/ccdc.csd.cc2860p6
title: CCDC 2091157: Experimental Crystal Structure Determination

description: Related Article: Yixiu Ge, Zaozao Qiu, Zuowei Xie|2021|Chem.Commun.|57|8071|doi:10.1039/D1CC03449A
DOI: 10.5517/ccdc.csd.cc2860q7
title: CCDC 2091158: Experimental Crystal Structure Determination

description: Related Article: Yixiu Ge, Zaozao Qiu, Zuowei Xie|2021|Chem.Commun.|57|8071|doi:10.1039/D1CC03449A
DOI: 10.5517/ccdc.csd.cc2860r8
title: CCDC 2091159: Experimental Crystal Structure Determination

description: Related Article: Yixiu Ge, Zaozao Qiu, Zuowei Xie|2021|Chem.Commun.|57|8071|doi:10.1039/D1CC03449A
DOI: 10.5517/ccdc.csd.cc28b7yt
title: CCDC 2095226: Experimental Crystal Structure Determination

description: Related Article: Yimin Hu, Zhengyang Yan, Wangyu Shi, Jianning Liao, Min Liu, Ting Pan, Wei Wang, Yongjun Wu, Xianghong Hao, Hongchao Guo|2021|Chem.Commun.|57|8059|doi:10.1039/D1CC02861H
DOI: 10.5285/c0152486-cdaf-4744-e053-6c86abc050c2
title: JR15001 (AMT25, JR864) CTD profiles (pressure, temperature, salinity, potential temperature, density, fluorescence, transmissance, downwelling PAR, dissolved oxygen concentration) calibrated and binned to 1 dbar.

description: This dataset consists of 74 CTD profiles (pressure, temperature, salinity, potential temperature, density, fluorescence, transmissance, downwelling PAR, dissolved oxygen concentration) collected during the Atlantic Meridional Transect programme cruise AMT25 (JR15001, JR864). The cruise period was between the 15th September and 4th November 2015, and CTD data were collected between the 18th September and 2nd November 2015. The cruise track between Immingham, United Kingdom and the Stanley, Falkland Islands (Malvinas) passed through both North and South Atlantic gyres. This dataset contributes to the AMT time-series of core oceanographic measurements along a north-south transect of the Atlantic Ocean. The profile down casts have been processed, quality controlled, calibrated for salinity, oxygen and fluorescence, then binned to 1 dbar.
DOI: 10.25592/uhhfdm.9574
title: Identifying circulating Urotensin II and Urotensin II-related peptide generating enzymes in the human plasma fraction Cohn IV-4

description: Proteases responsible for relase of Urotensin-II and Urotensin-II-related peptide from their precursor peptides were so far unknown. In our study we searched for those proteases in a human plasma protein fraction. Data for publication in Journal of Proteome Research
DOI: 10.25592/uhhfdm.9204
title: Identifying circulating Urotensin II and Urotensin II-related peptide generating enzymes in the human plasma fraction Cohn IV-4

description: Proteases responsible for relase of Urotensin-II and Urotensin-II-related peptide from their precursor peptides were so far unknown. In our study we searched for those proteases in a human plasma protein fraction. Data for publication in Journal of Proteome Research
DOI: 10.6084/m9.figshare.15154065.v1
title: Optimization of spacing between temporary plugging fracturing clusters in tight conglomerate reservoirs

description: <br>Tight conglomerate reservoirs need hydraulic fracturing to improve the efficiency of fracture network reconstruction. In this paper, the finite element (FEM) and discrete element (DEM) coupling method is used to simulate the solid calculation problem of hydraulic fracturing, and the flow field in the fracture is solved by the central finite volume method (FVM). The stress interference and cluster spacing optimization of the temporary plugging in the fracture are studied by using this FE-DE-FV coupling method. The results show that the stress interference generated by simultaneous fracturing of multiple fractures is beneficial to the formation of complex fractures, and reasonable cluster spacing can enable the intersection of stress reversal zones. Under the temporary plugging condition, it is difficult to form complex fracture network because the cluster spacing is too small, the fracture extension length is short, the cluster spacing is too large, and the stress interference between the fractures is small. The optimization of cluster spacing is also closely related to the in-situ stress difference. The larger the stress difference is, the smaller the cluster spacing should be used to enhance the stress interference.<br>
DOI: 10.6084/m9.figshare.15154065
title: Optimization of spacing between temporary plugging fracturing clusters in tight conglomerate reservoirs

description: <br>Tight conglomerate reservoirs need hydraulic fracturing to improve the efficiency of fracture network reconstruction. In this paper, the finite element (FEM) and discrete element (DEM) coupling method is used to simulate the solid calculation problem of hydraulic fracturing, and the flow field in the fracture is solved by the central finite volume method (FVM). The stress interference and cluster spacing optimization of the temporary plugging in the fracture are studied by using this FE-DE-FV coupling method. The results show that the stress interference generated by simultaneous fracturing of multiple fractures is beneficial to the formation of complex fractures, and reasonable cluster spacing can enable the intersection of stress reversal zones. Under the temporary plugging condition, it is difficult to form complex fracture network because the cluster spacing is too small, the fracture extension length is short, the cluster spacing is too large, and the stress interference between the fractures is small. The optimization of cluster spacing is also closely related to the in-situ stress difference. The larger the stress difference is, the smaller the cluster spacing should be used to enhance the stress interference.<br>
DOI: 10.5281/zenodo.5185336
title: RoadAnomaly-Images

description: images, sources and licenses for the Anomaly track of segmentmeifyoucan.com
description: Robin Chan and Svenja Uhlemeyer acknowledge funding by the German Federal Ministry for Economic Affairs and Energy, within the projects "KI Absicherung", grant no. 19A19005R, and "KI Delta Learning", grant no. 19A19013Q, respectively. We thank the consortiums for the successful cooperation. We would also like to thank the "BUW-KI" team who substantially contributed to collecting and labeling of data.
DOI: 10.5281/zenodo.5182827
title: Free and defect-bound (bi)polarons in LiNbO3: Atomic structure and spectroscopic signatures from ab initio calculations

description: Dataset of the publication “Free and defect-bound (bi)polarons in LiNbO<sub>3</sub>: Atomic structure and spectroscopic signatures from ab initio calculations“, F. Schmidt, A. L. Kozub, T. Biktagirov, C. Eigner, C. Silberhorn, A. Schindlmayr, W. G. Schmidt, and U. Gerstmann, Physical Review Research 2, 043002 (2020) ( https://doi.org/10.1103/PhysRevResearch.2.043002 ). The tar file includes the data on which the plots shown in figures 2, 3, 4, 6, 7, 8, and 9 are based.
description: The authors gratefully acknowledge financial support from the Deutsche Forschungsgemeinschaft (DFG) via Sonderforschungsbereich TRR 142, Project No. 231447078, and computational resources provided by the Paderborn Center for Parallel Computing (PC2) and the High Performance Computing Center Stuttgart (HLRS).
DOI: 10.5281/zenodo.5182826
title: Free and defect-bound (bi)polarons in LiNbO3: Atomic structure and spectroscopic signatures from ab initio calculations

description: Dataset of the publication “Free and defect-bound (bi)polarons in LiNbO<sub>3</sub>: Atomic structure and spectroscopic signatures from ab initio calculations“, F. Schmidt, A. L. Kozub, T. Biktagirov, C. Eigner, C. Silberhorn, A. Schindlmayr, W. G. Schmidt, and U. Gerstmann, Physical Review Research 2, 043002 (2020) ( https://doi.org/10.1103/PhysRevResearch.2.043002 ). The tar file includes the data on which the plots shown in figures 2, 3, 4, 6, 7, 8, and 9 are based.
description: The authors gratefully acknowledge financial support from the Deutsche Forschungsgemeinschaft (DFG) via Sonderforschungsbereich TRR 142, Project No. 231447078, and computational resources provided by the Paderborn Center for Parallel Computing (PC2) and the High Performance Computing Center Stuttgart (HLRS).
DOI: 10.6084/m9.figshare.15156258
title: TDC Data Extraction Matrix Aug. 12.xlsx

description: Dataset used to analyse systematic reviews
DOI: 10.7488/96e4efde-ab88-476d-ace0-a9023d070646
title: A4A, App for Asthma

description: This data set provides quantitative measurements on how asthma patients use the app for 3 months. It contains the usage frequency of each of the features such as 1 to 5 scale of 10-asthma symptom, asthma action plan, diary, medication list, lung function log, medication reminder, task reminder. You can access the data subjected to the following conditions: 1. Your research must be an ethically approved research by your University or an authorised ethics committee in your local country. 2. You are agree with the DataVault data sharing agreement
description: This is an observational study to observe how patients use an asthma app to support their self-management.
description: Hui CY, Walton R, McKinstry B, Pinnock H. Time to change the paradigm? A mixed method study of the preferred and potential features of an asthma self-management app. Health informatics journal. 2020 Jun;26(2):862-79.
DOI: 10.6084/m9.figshare.14566215
title: Data of publication Wang et al under review GBC

description: Data of Figures and Tables organized in Excel
DOI: 10.6084/m9.figshare.14566215.v1
title: Data of publication Wang et al under review GBC

description: Data of Figures and Tables organized in Excel
DOI: 10.5517/cc5rhw8
title: CCDC 171550: Experimental Crystal Structure Determination

description: Related Article: G.G.Aleksandrov, V.S.Sergienko, E.G.Afonin|2001|Zh.Neorg.Khim.|46|396|