cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48804/bzm9sj
title: Replication Data for: Markerless motion capture to assess upper extremity movements in individuals with dyskinetic cerebral palsy: an accuracy and validity study

description: The dataset contains 2D coordinates in pixels of key points extracted from videos of 30 children, adolescent and young adults with dyskinetic cerebral palsy (DCP) and 21 typically developing (TD) peers (age 5-24). The performed task was a reaching-sideways task (from starting point on the upper leg to the point of task achievment (PTA) sidewards at shoulder height) including eight repetitions. The key points were extracted from videos using open-source toolbox code DeepLabCut version 2.3 [&lt;a href="https://doi.org/10.1038/s41593-018-0209-y"&gt;1&lt;/a&gt;, &lt;a href="https://github.com/DeepLabCut/DeepLabCut"&gt;2&lt;/a&gt;]. The collected key points were: ankle, knee, hip, shoulders, elbow, wrist, forehead and chin, metacarpophalangeal III joint (MCP3) and the reaching target.
&lt;p&gt;
In addition, the joint angles collected with three-dimensional movement analysis (3DMA) at PTA are added - used for validation purposes in the related article.
&lt;p&gt;
The videos and 3DMA data were collected during a previous study [&lt;a href="https://doi.org/10.1371/journal.pone.0266294"&gt;3&lt;/a&gt;]. 
&lt;p&gt;
Data belong to the project &lt;a href="https://researchportal.be/en/project/automated-video-based-assessment-dyskinesia-cerebral-palsy-using-markerless-pose-estimation"&gt;'Automated VIdeo-based assessment of DYSkinesia in cerebral palsy using markerless pose estimation and machine learning (AVI-DYS)'&lt;/a&gt; and &lt;a href="https://researchportal.be/en/project/instrumented-dystonia-and-choreoathetosis-assessment-protocol-idca-upper-limb-movements"&gt;'Instrumented dystonia and choreoathetosis assessment protocol (IDCA) of upper limb movements in cerebral palsy'&lt;/a&gt; .
&lt;p&gt;
&lt;p&gt;
References:
&lt;p&gt;
1. Mathis, A., et al., DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nat Neurosci, 2018. 21(9): p. 1281-1289.
&lt;p&gt;
2. github.com/DeepLabCut/DeepLabCut
&lt;p&gt;
3. Vanmechelen I, et al., Psychometric properties of upper limb kinematics during functional tasks in children and adolescents with dyskinetic cerebral palsy. PLoS One 2022;17.
&lt;p&gt;
DOI: 10.48804/myjqe2
title: Muscle morphology of the medial gastrocnemius between typically developing children with different ancestral background

description: This dataset includes macroscopic morphological parameters for the medial gastrocnemius in one extended cohort of typically developing children, stratified in three ancestral subgroups.
DOI: 10.48804/txl95z
title: TransIOTA: Identification of new potential biomarkers for the diagnosis of ovarian cancer

description: This is the full dataset of the TransIOTA study. The data includes clinical and ultrasound information of patients with ovarian masses, as well as blood measurements of proteins, immune cells and cfDNA-scores.
DOI: 10.48804/uizs1n
title: Replication Data for: Dedicated microwave extraction allows uniform energy distribution to efficiently solubilize Ascophyllum nodosum

description: In this Excel data file, the authors share the data from the publication 'Dedicated microwave extraction allows uniform energy distribution to efficiently solubilize Ascophyllum nodosum'. The data encompasses results obtained with optimization experiments (variables: time, temperature and solid to liquid ratio), construction of the mass balances, zeta potential measurements and antimicrobial tests.
DOI: 10.48804/afqh7e
title: :unav

description: :unav
DOI: 10.48804/z7shgo
title: The Leuven-Haifa High-Resolution Fundus Image Dataset for Retinal Blood Vessel Segmentation and Glaucoma Diagnosis

description: The Leuven-Haifa dataset contains 240 disc-centered fundus images of 224 unique patients (75 patients with normal tension glaucoma, 63 patients with high tension glaucoma, 30 patients with other eye diseases and 56 healthy controls) from the University Hospitals of Leuven. The arterioles and venules of these images were both annotated by master students in medicine and corrected by a senior annotator. All corrected segmentations are provided. Diagnosis, age, sex, vascular parameters as well as a quality score are provided as metadata. Potential reuse is envisioned as the development and validation of retinal segmentation algorithms or the development of glaucoma diagnosis algorithms.
DOI: 10.48804/ab97ek
title: Replication Data for: Chronicling GDPR Transparency Rights in Practice: The Good, the Bad and the Challenges Ahead

description: This dataset contains the surveys used to conduct the two legal-empirical studies on the right of access under Article 15 GDPR in 2020 and 2022, in both .docx and .json format. It also includes the figures used to illustrate the findings presented in the following paper: Pierre Dewitte, Jef Ausloos, 'Chronicling GDPR Transparency Rights in Practice: The Good, the Bad and the Challenges Ahead' International Data Privacy Law (2023) 14 International Data Privacy Law 1.
DOI: 10.48804/xmnvvy
title: Wind-fArm gravitY-waVe and blockagE code
title: WAYVE

description: WAYVE is a Python framework for atmospheric perturbation models developed to simulate the interaction between wind farms and the atmosphere. It focuses on the generation and feedback effects of gravity waves.
description: Python, 3
description: numpy, 1.24.3
description: scipy, 1.10.1
description: numba, 0.57.0
description: mpmath, 1.2.1
description: netCDF4, 1.6.2
description: matplotlib, 3.7.1
DOI: 10.48804/fb9mjz
title: Replication Data for: Fluid exsolution during disequilibrium crystallization in the border and wall zones of internally zoned pegmatites

description: The datasets contain microthermometry, Raman spectroscopy and LA-ICP-MS results from fluid inclusions trapped in tourmaline and quartz for the paper: “Fluid exsolution during disequilibrium crystallization: Evidence from the border and wall zone of the Emmons Pegmatite (Maine, USA)”. The purpose of the analyses is to examine the fluid properties and compositions of the fluid inclusions and see if any changes occur within different crystal morphologies. All measurements were done on natural rock samples from the Emmons pegmatite in Maine, USA.
DOI: 10.48804/yoiaeg
title: FIR Channel Models for Ultrasound In-Body Communication using Scattering Gelatin Phantoms

description: This dataset aims to enhance the design of an in-body communication system using ultrasound waves as an information carrier. To this end, we carried out channel impulse response (CIR) characterizations of custom-fabricated gelatin phantoms of rectangular geometries. The used transducers are mm-scale, omnidirectional, ~1MHz ultrasound transducers. The channel impulse responses are represented by least-squares fitting on a finite impulse response (FIR) model with 2000 taps sampled at 5MHz, capable of capturing an impulse response duration of 400us.
The phantoms are characterized in two different scenarios: i) surrounded by an anechoic water tank (mimicking in-body communication), and ii) by the open air (mimicking on-body communication).
Finally, to improve channel realism, a subset of phantoms have custom-inserted chicken bones.
This dataset is also accessible on &lt;a href="https://github.com/BosThomas/USbodyComm"&gt;Github link&lt;/a&gt;
DOI: 10.48804/rxhf1w
title: Replication Data for: Molecular Alignment and Chiral Bias under Dynamic Nanoconfinement Conditions: The Impact of Molecular Symmetry

description: The purpose of this data set is to give the reader access to the data used for the study presented in the publication "Molecular Alignment and Chiral Bias under Dynamic Nanoconfinement Conditions: The Impact of Molecular Symmetry" (https://doi.org/10.1021/acs.jpcc.3c00012).
This dataset contain STM images, processed data and the relative analysis of the data used to study the chiral self-assembly of an achiral molecule in a nanoconfined space. In particular, the effect on the nanoconfinement on such self-assembled molecular networks was assessed and the preferential formation of a chiral structure was observed, in corrals created with a specific orientation with respect to the substrate.
DOI: 10.48804/xfc8pq
title: Replication Data for: Coaxial camera-based monitoring of fiber laser cutting of thick plates

description: This dataset contains experimental data for the published paper "Coaxial camera-based monitoring of fiber laser cutting of thick plates". The dataset consists of the recorded videos and quality measurement raw files. The videos can be further used to explore different image processing techniques to improve process monitoring. The description of the experimental setup can be found in the corresponding paper (https://doi.org/10.1016/j.optlastec.2020.106743).
DOI: 10.15468/dl.54racp
title: Occurrence Download

description: A dataset containing 102081 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is India Biodiversity Portal publication grade dataset"
 ]
}

 The dataset includes 102081 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001696-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnmudk
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Prosopis cineraria (L.) Druce"
 ]
}

 The dataset includes 225 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001711-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74ws6v
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acanthus mollis L.)",
 "Country is one of (Spain, France, Andorra)",
 "BasisOfRecord is one of (Specimen, Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 253 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001712-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48804/xes6py
title: Replication Data for: Joint loading topography during occupational tasks - A musculoskeletal modeling approach to substantiate ergonomic recommendations

description: The paper titled "Joint loading topography during occupational tasks - A musculoskeletal modeling approach to substantiate ergonomic recommendations" presents a comprehensive dataset aimed at investigating the joint loading patterns experienced by workers during various occupational tasks. This dataset encompasses the motion capture data, which provides the possibility to replicate the simulations performed in the accompanying paper giving insights into the biomechanical stresses and strains on the joints and muscles during specific work activities. The scope of the dataset includes a wide range of occupational tasks, allowing researchers and practitioners to assess and develop ergonomic recommendations to enhance workplace safety and reduce the risk of musculoskeletal injuries.
DOI: 10.48804/juvkfd
title: The feasibility of the adapted H-GRASP program for perceived and actual daily-life upper limb activity in the chronic phase post-stroke
title: AH-GRASP

description: Spreadsheets of data regarding the S66123 study in the chronic phase post-stroke. The study aimed to investigate the feasibility and preliminary efficacy of the AH-GRASP program on perceived and actual daily-life activity in people with good observed upper limb motor function but low perceived UL activity in the chronic phase post-stroke.
Data include: demographics of the 19 included participants at enrolment; clinical outcomes and accelerometry data at enrolment, baseline and post-intervention; and feasibility data at post-intervention.
description: ActiLife, 6
description: Matlab, R2020a
DOI: 10.48804/9gw2vb
title: Replication Data for: Monitoring opportunities in fiber laser flame cutting

description: This dataset contains experimental data for the published paper "Monitoring opportunities in fiber laser flame cutting". The dataset consists of the recorded videos and photodiode signals. The videos can be further used to improve process monitoring. The description of the experimental setup can be found in the corresponding paper (https://doi.org/10.1007/s40516-021-00158-y).
DOI: 10.48804/jdayo1
title: Replication Data for: A virtual sensing approach for quality and productivity optimization in laser flame cutting

description: This dataset contains experimental data for the published paper "A virtual sensing approach for quality and productivity optimization in laser flame cutting". The dataset consists of the recorded videos and simulation model files. The simulation model can be used by the next generation of the researchers to evaluate the plate temperature distribution during laser cutting. The description of the experimental setup can be found in the corresponding paper (https://doi.org/10.1007/s00170-022-09750-8).
DOI: 10.15468/dl.p4xewy
title: Occurrence Download

description: A dataset containing 12428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 -90,180 -90,180 -40,-180 -40,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calanoides acutus (Giesbrecht, 1902)",
 "Year 2000-2020"
 ]
}

 The dataset includes 12428 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001713-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48804/ijmtvs
title: Mechanical design documentation for the trim-cut setup

description: This dataset contains the documentation for the trim-cut setup introduced in the published paper "Trim-cut technique for analysis of melt flow dynamics in industrial laser cutting machine". The dataset consists of the 3D assembly files and their description. This setup provides a unique opportunity for laser cutting process visualization and can be further adapted depending on the application. The additional description of the experimental setup can be found in the corresponding paper (https://doi.org/10.1016/j.procir.2020.01.157).
DOI: 10.48804/klcb4w
title: High-speed videos of the laser cutting process

description: This dataset contains high-speed recordings of the laser cutting process gathered during PhD work of Nikita Levichev. The videos can be further used to visualize the laser cutting process. The description of the experimental campaign can be found in the corresponding paper (https://doi.org/10.1016/j.optlaseng.2022.107333). Additional information about experimental setups used to collect the data can be accessed at https://doi.org/10.1117/12.2606544.
DOI: 10.48804/xrjqk2
title: Synthetic ground-truth data for speckle tracking algorithms

description: This folder contains data and code accompanying the paper [1]. The database is composed of 105 simulated sequences, including:

&lt;ul&gt;
&lt;li&gt; simulated texture from 7 vendors; &lt;/li&gt;
&lt;ul&gt;
 &lt;li&gt; 5 motion patterns;&lt;/li&gt; 
 &lt;li&gt; 3 probe orientations;&lt;/li&gt; 
 &lt;/ul&gt;
&lt;/ul&gt;

&lt;ul&gt; 
&lt;li&gt; For each sequence we provide: &lt;/li&gt;
&lt;ul&gt;
 &lt;li&gt; simulated B-mode data: path = "./data &lt;vendor_id&gt;/&lt;view_id&gt;/&lt;motion_id&gt;/im_sim.mat";&lt;/li&gt;
 &lt;li&gt; ground truth tracking: path = "./data/&lt;vendor_id&gt;/&lt;view_id&gt;/ &lt;motion_id&gt;/ground_truth.mat";&lt;/li&gt;
&lt;/ul&gt;
&lt;/ul&gt;


The following MATLAB scripts are provided to facilitate the use of the data:
&lt;ul&gt; 
 &lt;li&gt; main_play_data.m: to play the simulated cine-loops as well as the ground truth tracking;&lt;/li&gt; 
 &lt;li&gt; main_compute_strain.m: to compute ground truth segmental strain.&lt;/li&gt;
&lt;/ul&gt;
Please consider citing [1] if you make use of the data. &lt;br&gt;

[1] M. Alessandrini, B. Chakraborty, B. Heyde, O. Bernard, M. De Craene, M. Sermesant and J. D'hooge, "Realistic Vendor-Specific Synthetic Ultrasound Data for Quality Assurance of 2D Speckle Tracking Echocardiography: Simulation Pipeline and Open Access Database.", accepted in IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control.
DOI: 10.48804/41raqa
title: Replication Data for: Stiffness Matters: Improved Failure Risk Assessment of Ascending Thoracic Aortic Aneurysms

description: This data set contains data that was analyzed within the context of a clinical study to find a better in vivo predictor to assess the dissection or rupture risk of ascending thoracic aortic aneurysm. 
The excel sheet contains three different tabs:
* tab: 'Overview': shows all the data that was analyzed within the context of this clinical study: general, therapeutical, geometrical, surgical, histological and mechanical data of the aneurysm
* tab: 'Mechanics': shows an in-depth overview of the mechanical data of each patient: fitted in vivo thickness and material properties, fitting quality measures, wall strengths, applied loading conditions, deterministic peak wall stresses, deterministic and propabilistic failure risks
* tab: 'Probabilistic_PWS_ATAA00X': shows the 10 000 inputs (In vivo thickness and diastolic blood pressure) and outputs (PWS in circumferential and axial direction) of the probabilistic wall stress estimation for patient ATAA00X (X=1...33). Additionally, the variables (mu and sigma) to describe the lognormal probability density function which was fitted over the peak wall stresses are given
DOI: 10.48804/8lmrxt
title: Replication Data for: Automated classification of dystonia and choreoathetosis in dyskinetic cerebral palsy during a lower extremity task: a pilot study on a retrospective video dataset

description: &lt;p&gt;
This RDR repository contains the data and code used in the study ‘Automated classification of dystonia in dyskinetic cerebral palsy within a lower extremity task using markerless motion tracking and time series classification: a pilot study on retrospective videos.’ The study had three main steps: 
&lt;p&gt;
1. Kinematic Extraction with DeepLabCut 2.3 from videos [&lt;a href="https://www.nature.com/articles/s41593-018-0209-y/"&gt;1&lt;/a&gt;, &lt;a href="https://github.com/DeepLabCut/DeepLabCut"&gt;2&lt;/a&gt;]
&lt;p&gt;
2. Post-processing of extracted X,Y coordinates 
&lt;p&gt;
3. Time-Series Classification with HIVE-COTE 2.0 &lt;a href="https://link.springer.com/article/10.1007/s10994-021-06057-9"&gt;[3]&lt;/a&gt;. Users can begin with our preprocessing script or proceed directly to time series classification with the data provided.
&lt;p&gt;
Our raw data consisted of 66 videos from 33 participants (29 with dyskinetic cerebral palsy / four typically developing, age 7-23, 13 females / 20 males). The participants performed an item from the Dyskinesia Impairment Scale (DIS) - the heel-toe tapping task with the right lower leg (task 11) and the left lower leg (task 12) &lt;a href="https://onlinelibrary.wiley.com/doi/10.1111/j.1469-8749.2011.04209.x"&gt;[4]&lt;/a&gt;.
The original videos are NOT included in the RDR repro due to privacy reasons.
&lt;p&gt;
References:
&lt;p&gt;
1. Mathis, A., et al., DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nat Neurosci, 2018. 21(9): p. 1281-1289.
&lt;p&gt;
2. github.com/DeepLabCut/DeepLabCut
&lt;p&gt;
3. Middlehurst M, Large J, Flynn M, Lines J, Bostrom A, Bagnall A. HIVE-COTE 2.0: a new meta ensemble for time series classification. Mach Learn . 2021 Dec 1; 110(11–12):3211–43
&lt;p&gt;
4. Monbaliu E, Ortibus E, de Cat J, Dan B, Heyrman L, Prinzie P, et al. The dyskinesia Impairment Scale: a new instrument to measure dystonia and choreoathetosis in dyskinetic cerebral palsy. Dev Med Child Neurol. 2012;54:278–83.
DOI: 10.48804/0ddd7i
title: Replication Data for: Virtual measurements for exterior vibro-acoustic problems using experimental modal models

description: Raw data for the paper "Virtual measurements for exterior vibro-acoustic problems using experimental modal models". The dataset contains the sensor readings for the experimental validation described in section 5 as well as process models used in the estimator. The data can be directly accessed via MATLAB or GNU Octave (open access). The .csv files contain the data used in the figures of the paper.
DOI: 10.48804/duufvs
title: Replication Data for: Intracellular BAPTA directly inhibits PFKFB3, thereby impeding mTORC1-driven Mcl-1 translation and killing MCL-1-addicted cancer cells
title: Replication Data for: Sneyers et al, Cell Death and Disease (2023)

description: Datasets that support the main figures published in Sneyers et al, Cell Death and Disease (2023). The project aims to decipher how BAPTAi limits the survival of B-cell cancers, more specifically by its Ca2+-independent effects. We can conclude from these data that BAPTAi inhibits the activity of the glycolytic enzyme PFKFB3, thereby deactivating mTORC1-driven translation, resulting in MCL-1 downregulation. As a consequence, BAPTAi treatment results in cell death in MCL-1 dependent cancers.
DOI: 10.48804/j1iemt
title: Online supplementary tables - PhD Thesis - Grégoire Coppens - New knowledge discovery regarding causes and consequences of paediatric critical illnesses via complex analyses of DNA methylation

description: Online supplementary tables from the PhD Thesis from Grégoire Coppens.
Tables where to large to fit within the page limit of the thesis.
These excel files contain supplementary tables with more extensive statistical results on every differentially methylated position.
DOI: 10.48804/nqsh4f
title: Replication Data for: Eat-Radar: Continuous Fine-Grained Eating Gesture Detection Using FMCW Radar and 3D Temporal Convolutional Network With Attention

description: The FMCW radar-based food intake monitoring-oriented dataset contains 70 meal sessions (4132 eating gestures and 893 drinking gestures) from 70 participants with a total duration of 1155 minutes. Four eating styles (fork & knife, chopsticks, spoon, hand) are included in this dataset. The radar data formats in this dataset include Range-Doppler-Time data (RD Cube), and Doppler-Time data (DT Map).
DOI: 10.48804/vwgs9v
title: Replication Data for: Intracellular BAPTA directly inhibits PFKFB3, thereby impeding mTORC1-driven Mcl-1 translation and killing MCL-1-addicted cancer cells (supplementary data)

description: Datasets that support the supplementary figures published in Sneyers et al, Cell Death and Disease (2023). The project aims to decipher how BAPTAi limits the survival of B-cell cancers, more specifically by its Ca2+-independent effects. We can conclude from these data that BAPTAi inhibits the activity of the glycolytic enzyme PFKFB3, thereby deactivating mTORC1-driven translation, resulting in MCL-1 downregulation. As a consequence, BAPTAi treatment results in cell death in MCL-1 dependent cancers. (2023-08-24)
DOI: 10.48804/8pansc
title: Replication Data for: Loss of INPP5K attenuates agonist-induced Ca2+ responses in the glioblastoma cell line U-251 MG cells

description: This dataset includes all underlying data integrated in the publication in Loncke et al., 2023, BBA Advances and contains all data necessary to replicate the published figures. The data consist of numerical calcium traces of Fura-2 ratio and radioactive 45Ca2+ emission over time, quantification of numerical parameters of intracellular calcium responses, as well as densitometric quantification of immunoblots. All data was acquired using U-251 MG cells.