cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34760/5f5b80c5c3ab2
title: GIPS-III

description: A glycometabolic intervention as adjunct to primary percutaneous intervention in ST elevation myocardial infarction (GIPS)-III trial
description: Data categories: Biological samples, Imaging data, Medical records, National registries, Physiological/Biochemical measurements, Survey data
Material collected: DNA, Plasma, Serum, Other
Experimental data: Genomics, Metabolomics, Other
Number of donors: 379
Sex: Female, Male
DOI: 10.5281/zenodo.4109173
title: Dataset for Noisy quantum metrology enhanced by continuous nondemolition measurement

description: Datasets used for generating the figures. Please see included <strong>README.md</strong>.
DOI: 10.5281/zenodo.3862294
title: Dataset for Noisy quantum metrology enhanced by continuous nondemolition measurement

description: Datasets used for generating the figures. Please see included <strong>README.md</strong>.
DOI: 10.34760/5f5b80896b490
title: Risk or benefit in screening for cardiovascular disease

description: Cardiac CT-scans (non-contrast) of appr. 14.000 participants for the analysis of coronary artery calcium to determine the cardiovascular risk. High risk participants are reffered to their GP for medical treatment.
description: 
Data categories: Survey data
Material collected: Not available
Experimental data: Other
Number of donors: 14000
Sex	: Female, Male
Age: 45-74 Year
DOI: 10.5281/zenodo.4108660
title: Example Data for 3D quantification of zebrafish cerebrovascular architecture

description: Example data for: E. C. Kugler, J. Frost, V. Silva, K. Plant, K. Chhabria, T. J.A. Chico, P. A. Armitage 3D quantification of zebrafish cerebrovascular architecture by automated image analysis of light sheet fluorescence microscopy datasets bioRxiv 2020.08.06.239905; doi: https://doi.org/10.1101/2020.08.06.239905 Link: https://www.biorxiv.org/content/10.1101/2020.08.06.239905v2 <br> Code: https://github.com/ElisabethKugler/ZFVascularQuantification (doi:https://doi.org/10.5281/zenodo.3978278) Transgenic zebrafish 3dpf: Tg(kdrl:HRAS-mCherry)s916<br> Acquisition: Zeiss Z.1 light sheet microscope with a Plan-Apochromat 20x/1.0 Corr nd=1.38 objective, sCMOS detection unit. <br> Activated pivot scan, dual-sided illumination and online fusion; <br> properties of acquired data are as follows: 0.7x zoom, 16bit image depth, 1920 x 1920px (approximately 0.33 x 0.33 µm) image size and minimum z-stack interval (approximately 0.5µm), <br> 561nm laser, LP560, and LP585. Data: <br> - tiff and MIPs<br> - TF: pre-processed with Sato enhancement<br> - TH: segmented with Otsu thresholding<br> - 512x512: downsampled<br> - Reg: intersample registration<br> - analysis: folder for quantification
DOI: 10.5281/zenodo.4108659
title: Example Data for 3D quantification of zebrafish cerebrovascular architecture

description: Example data for: E. C. Kugler, J. Frost, V. Silva, K. Plant, K. Chhabria, T. J.A. Chico, P. A. Armitage 3D quantification of zebrafish cerebrovascular architecture by automated image analysis of light sheet fluorescence microscopy datasets bioRxiv 2020.08.06.239905; doi: https://doi.org/10.1101/2020.08.06.239905 Link: https://www.biorxiv.org/content/10.1101/2020.08.06.239905v2 <br> Code: https://github.com/ElisabethKugler/ZFVascularQuantification (doi:https://doi.org/10.5281/zenodo.3978278) Transgenic zebrafish 3dpf: Tg(kdrl:HRAS-mCherry)s916<br> Acquisition: Zeiss Z.1 light sheet microscope with a Plan-Apochromat 20x/1.0 Corr nd=1.38 objective, sCMOS detection unit. <br> Activated pivot scan, dual-sided illumination and online fusion; <br> properties of acquired data are as follows: 0.7x zoom, 16bit image depth, 1920 x 1920px (approximately 0.33 x 0.33 µm) image size and minimum z-stack interval (approximately 0.5µm), <br> 561nm laser, LP560, and LP585. Data: <br> - tiff and MIPs<br> - TF: pre-processed with Sato enhancement<br> - TH: segmented with Otsu thresholding<br> - 512x512: downsampled<br> - Reg: intersample registration<br> - analysis: folder for quantification
DOI: 10.34760/5f5b806beb75f
title: Lifelines DEEP Food intake

description: Daily nutrient intake (energy(kcal), energy (kJ), total protein (g), plant protein (g), animal protein (g), total fat (g), total carbohydrates (g), total alcohol (g), total protein (en%), plant protein (en%), animal protein (en%), total fat (en%), total carbohydrates (en%), total alcohol (en%),) Lifelines DEEP participants
description: Number of donors:	1450
DOI: 10.5281/zenodo.3929253
title: DFT+U study of CO2 reduction and CO oxidation on a reconstructed CeO(2-x)(110) facet.

description: Optimised structures of ceria (110) and reconstructed (110) facets for CO2 reduction and CO oxidation with and without doping in VASP POSCAR format. Vibrational frequencies are given for structures where Gibbs free energies are used in associated publication.
DOI: 10.5281/zenodo.3929252
title: DFT+U study of CO2 reduction and CO oxidation on a reconstructed CeO(2-x)(110) facet.

description: Optimised structures of ceria (110) and reconstructed (110) facets for CO2 reduction and CO oxidation with and without doping in VASP POSCAR format. Vibrational frequencies are given for structures where Gibbs free energies are used in associated publication.
DOI: 10.21227/kzgq-bs26
title: Baseline 8

description: Baseline 8 yearly avg
DOI: 10.6084/m9.figshare.13117985
title: Supplementary Material for: Postural Stability in Obese Preoperative Bariatric Patients Using Static and Dynamic Evaluation

description: <b><i>Introduction:</i></b> Globally, 300 million adults have clinical obesity. Heightened adiposity and inadequate musculature secondary to obesity alter bipedal stance and gait, diminish musculoskeletal tissue quality, and compromise neuromuscular feedback; these physiological changes alter stability and increase injury risk from falls. Studies in the field focus on obese patients across a broad range of body mass indices (BMI &gt;30 kg/m<sup>2</sup>) but without isolating the most morbidly obese subset (BMI ≥40 kg/m<sup>2</sup>). We investigated the impact of obesity in perturbing postural stability in morbidly obese subjects elected for bariatric intervention, harboring a higher-spectrum BMI. <b><i>Subjects and Methods:</i></b> Traditional force plate measurements and stabilograms are gold standards employed when measuring center of pressure (COP) and postural sway. To quantify the extent of postural instability in subjects with obesity before bariatric surgery, we assessed 17 obese subjects with an average BMI of 40 kg/m<sup>2</sup> in contrast to 13 nonobese subjects with an average BMI of 30 kg/m<sup>2</sup>. COP and postural sway were measured from static and dynamic tasks. Involuntary movements were measured when patients performed static stances, with eyes either opened or closed. Two additional voluntary movements were measured when subjects performed dynamic, upper torso tasks with eyes opened. <b><i>Results:</i></b> Mean body weight was 85% (<i>p</i> &lt; 0.001) greater in obese than nonobese subjects. Following static balance assessments, we observed greater sway displacement in the anteroposterior (AP) direction in obese subjects with eyes open (87%, <i>p</i> &lt; 0.002) and eyes closed (76%, <i>p</i> = 0.04) versus nonobese subjects. Obese subjects also exhibited a higher COP velocity in static tests when subjects’ eyes were open (47%, <i>p</i> = 0.04). Dynamic tests demonstrated no differences between groups in sway displacement in either direction; however, COP velocity in the mediolateral (ML) direction was reduced (31%, <i>p</i> &lt; 0.02) in obese subjects while voluntarily swaying in the AP direction, but increased in the same cohort when swaying in the ML direction (40%, <i>p</i> &lt; 0.04). <b><i>Discussion and Conclusion:</i></b> Importantly, these data highlight obesity’s contribution towards increased postural instability. Obese subjects exhibited greater COP displacement at higher AP velocities versus nonobese subjects, suggesting that clinically obese individuals show greater instability than nonobese subjects. Identifying factors contributory to instability could encourage patient-specific physical therapies and presurgical measures to mitigate instability and monitor postsurgical balance improvements.
DOI: 10.6084/m9.figshare.13117985.v1
title: Supplementary Material for: Postural Stability in Obese Preoperative Bariatric Patients Using Static and Dynamic Evaluation

description: <b><i>Introduction:</i></b> Globally, 300 million adults have clinical obesity. Heightened adiposity and inadequate musculature secondary to obesity alter bipedal stance and gait, diminish musculoskeletal tissue quality, and compromise neuromuscular feedback; these physiological changes alter stability and increase injury risk from falls. Studies in the field focus on obese patients across a broad range of body mass indices (BMI &gt;30 kg/m<sup>2</sup>) but without isolating the most morbidly obese subset (BMI ≥40 kg/m<sup>2</sup>). We investigated the impact of obesity in perturbing postural stability in morbidly obese subjects elected for bariatric intervention, harboring a higher-spectrum BMI. <b><i>Subjects and Methods:</i></b> Traditional force plate measurements and stabilograms are gold standards employed when measuring center of pressure (COP) and postural sway. To quantify the extent of postural instability in subjects with obesity before bariatric surgery, we assessed 17 obese subjects with an average BMI of 40 kg/m<sup>2</sup> in contrast to 13 nonobese subjects with an average BMI of 30 kg/m<sup>2</sup>. COP and postural sway were measured from static and dynamic tasks. Involuntary movements were measured when patients performed static stances, with eyes either opened or closed. Two additional voluntary movements were measured when subjects performed dynamic, upper torso tasks with eyes opened. <b><i>Results:</i></b> Mean body weight was 85% (<i>p</i> &lt; 0.001) greater in obese than nonobese subjects. Following static balance assessments, we observed greater sway displacement in the anteroposterior (AP) direction in obese subjects with eyes open (87%, <i>p</i> &lt; 0.002) and eyes closed (76%, <i>p</i> = 0.04) versus nonobese subjects. Obese subjects also exhibited a higher COP velocity in static tests when subjects’ eyes were open (47%, <i>p</i> = 0.04). Dynamic tests demonstrated no differences between groups in sway displacement in either direction; however, COP velocity in the mediolateral (ML) direction was reduced (31%, <i>p</i> &lt; 0.02) in obese subjects while voluntarily swaying in the AP direction, but increased in the same cohort when swaying in the ML direction (40%, <i>p</i> &lt; 0.04). <b><i>Discussion and Conclusion:</i></b> Importantly, these data highlight obesity’s contribution towards increased postural instability. Obese subjects exhibited greater COP displacement at higher AP velocities versus nonobese subjects, suggesting that clinically obese individuals show greater instability than nonobese subjects. Identifying factors contributory to instability could encourage patient-specific physical therapies and presurgical measures to mitigate instability and monitor postsurgical balance improvements.
DOI: 10.5281/zenodo.4109040
title: Raw and analyzed data for manuscript: "Wood surface ablation and nanostructuring using a femtosecond laser"

description: <strong>Abstract</strong> The processing of Norway spruce and European beech wood specimens by means of femtosecond laser pulses was investigated on conditioned natural samples as well as on samples coated with beeswax or a water-borne stain. Depending on laser pulse energies and processing times, this allowed for different modes of surface modification. At low laser intensities, an etching almost without thermal impact was detected, whereas higher laser intensities led to the generation of hierarchical micro and nanostructures. The usage of argon or atmospheric air as cover gases during the laser processing had only minor effects on the surface structures. Observed differences in the etching or functionalization of the wooden surfaces mostly originated in the chemical structure of the surface finish and the physical properties of the wood substrates, such as the density or moisture content.
description: Manuscript submitted to journal Holzforschung, 2020
DOI: 10.5281/zenodo.4109039
title: Raw and analyzed data for manuscript: "Wood surface ablation and nanostructuring using a femtosecond laser"

description: <strong>Abstract</strong> The processing of Norway spruce and European beech wood specimens by means of femtosecond laser pulses was investigated on conditioned natural samples as well as on samples coated with beeswax or a water-borne stain. Depending on laser pulse energies and processing times, this allowed for different modes of surface modification. At low laser intensities, an etching almost without thermal impact was detected, whereas higher laser intensities led to the generation of hierarchical micro and nanostructures. The usage of argon or atmospheric air as cover gases during the laser processing had only minor effects on the surface structures. Observed differences in the etching or functionalization of the wooden surfaces mostly originated in the chemical structure of the surface finish and the physical properties of the wood substrates, such as the density or moisture content.
description: Manuscript submitted to journal Holzforschung, 2020
DOI: 10.21227/qm8n-hg76
title: Model 2

description: Update of Model 1 where we use better metrics to fill missing values
DOI: 10.5517/ccxd54l
title: CCDC 845839: Experimental Crystal Structure Determination

description: Related Article: A.Gushchin, R.Llusar, D.Recatala, P.Abramov|2012|Koord.Khim.|38|185|
DOI: 10.5517/ccdc.csd.cc23p7xz
title: CCDC 1956841: Experimental Crystal Structure Determination

description: Related Article: Vladyslav V. Bakhonsky, Aleksander A. Pashenko, Jonathan Becker, Heike Hausmann, Huub J. M. De Groot, Herman S. Overkleeft, Andrey A. Fokin, Peter R. Schreiner|2020|Dalton Trans.|49|14009|doi:10.1039/D0DT02391D
DOI: 10.5517/ccdc.csd.cc23p7wy
title: CCDC 1956840: Experimental Crystal Structure Determination

description: Related Article: Vladyslav V. Bakhonsky, Aleksander A. Pashenko, Jonathan Becker, Heike Hausmann, Huub J. M. De Groot, Herman S. Overkleeft, Andrey A. Fokin, Peter R. Schreiner|2020|Dalton Trans.|49|14009|doi:10.1039/D0DT02391D
DOI: 10.5281/zenodo.4109617
title: The MRN complex promotes DNA repair by homologous recombination and restrains antigenic variation in African trypanosomes

description: Sanger sequencing of PCR products to determine MMEJ repair junctions.
description: Sanger sequencing of PCR products for MMEJ analysis
DOI: 10.5281/zenodo.4109616
title: The MRN complex promotes DNA repair by homologous recombination and restrains antigenic variation in African trypanosomes

description: Sanger sequencing of PCR products to determine MMEJ repair junctions.
description: Sanger sequencing of PCR products for MMEJ analysis
DOI: 10.5281/zenodo.4109727
title: Raw data for the publication "Effect of graphene substrate type on formation of Bi2Se3 nanoplates", Sci. Rep. 9, 4791, 2019. https://doi.org/10.1038/s41598-019-41178-1

description: This dataset contains the raw AFM and SEM measurement data used for the study of stages of formation of Bi2Se3 nanoplates on different substrates and for the statistical analysis of sizes and thicknesses of the nanoplates. The results are published in Sci. Rep. 9, 4791, 2019. https://doi.org/10.1038/s41598-019-41178-1
DOI: 10.5281/zenodo.4109726
title: Raw data for the publication "Effect of graphene substrate type on formation of Bi2Se3 nanoplates", Sci. Rep. 9, 4791, 2019. https://doi.org/10.1038/s41598-019-41178-1

description: This dataset contains the raw AFM and SEM measurement data used for the study of stages of formation of Bi2Se3 nanoplates on different substrates and for the statistical analysis of sizes and thicknesses of the nanoplates. The results are published in Sci. Rep. 9, 4791, 2019. https://doi.org/10.1038/s41598-019-41178-1
DOI: 10.21227/c4p7-2348
title: Baseline 8

description: Baseline 8 statistical scaling
DOI: 10.6084/m9.figshare.13118054
title: Supplementary Tables

description: Supplementary Table S1 and S2.
DOI: 10.6084/m9.figshare.13118054.v1
title: Supplementary Tables

description: Supplementary Table S1 and S2.
DOI: 10.21227/p68z-eq36
title: x

description: x
DOI: 10.5281/zenodo.4109771
title: H2020-HiTime Dataset for https://doi.org/10.1039/C8NR05500A (arXiv:1903.09541v1)

description: Data set for paper "Bulk-free topological insulator Bi<sub>2</sub>Se<sub>3</sub> nanoribbons with magnetotransport signatures of Dirac surface states", forFigures 1, 2, 3, and 4. https://doi.org/10.1039/C8NR05500A (arXiv:1903.09541v1)
DOI: 10.5281/zenodo.4109770
title: H2020-HiTime Dataset for https://doi.org/10.1039/C8NR05500A (arXiv:1903.09541v1)

description: Data set for paper "Bulk-free topological insulator Bi<sub>2</sub>Se<sub>3</sub> nanoribbons with magnetotransport signatures of Dirac surface states", forFigures 1, 2, 3, and 4. https://doi.org/10.1039/C8NR05500A (arXiv:1903.09541v1)
DOI: 10.25392/leicester.data.13061633
title: Slurry Viromes

description: Hybrid virome from a slurry tank, that was assembled from promethION and Illumina reads. Contains all vOTUs used in analysis. Annotations of assembled contigs are provided in both FFN, FAA and GBK format. Alignments and tree files that were used for phylogenetic analysis of crAss-like phages are provided, along with alignmen and tree files for all other phylogenetic analysis
DOI: 10.25392/leicester.data.13061633.v1
title: Slurry Viromes

description: Hybrid virome from a slurry tank, that was assembled from promethION and Illumina reads. Contains all vOTUs used in analysis. Annotations of assembled contigs are provided in both FFN, FAA and GBK format. Alignments and tree files that were used for phylogenetic analysis of crAss-like phages are provided, along with alignmen and tree files for all other phylogenetic analysis
DOI: 10.6084/m9.figshare.12054096
title: Roosting Habitat Use by Cerulean Warblers

description: Data and R code for a manuscript on roosting habitat use by adult male Cerulean Warblers.
DOI: 10.6084/m9.figshare.12054096.v1
title: Roosting Habitat Use by Cerulean Warblers

description: Data and R code for a manuscript on roosting habitat use by adult male Cerulean Warblers.
DOI: 10.5281/zenodo.4107058
title: Dataset - Learning Grain Boundary Segregation Energy Spectra in Polycrystals

description: Accompanying Dataset for the article "Learning Grain Boundary Segregation Energy Spectra in Polycrystals". The dataset contains 1) an example Jupyter Notebook with all necessary code to train and use the machine learning models outlined in the paper, and 2) a database of segregation spectra of 250+ binary alloys, in the form of LAMMPS text dump files of solvent polycrystals with predicted grain boundary solute segregation energies. Please refer to the README.pdf for detailed file description.
DOI: 10.5281/zenodo.4107057
title: Dataset - Learning Grain Boundary Segregation Energy Spectra in Polycrystals

description: Accompanying Dataset for the article "Learning Grain Boundary Segregation Energy Spectra in Polycrystals". The dataset contains 1) an example Jupyter Notebook with all necessary code to train and use the machine learning models outlined in the paper, and 2) a database of segregation spectra of 250+ binary alloys, in the form of LAMMPS text dump files of solvent polycrystals with predicted grain boundary solute segregation energies. Please refer to the README.pdf for detailed file description.
DOI: 10.6084/m9.figshare.13085081.v1
title: naming_reconciliation

description: testing upload of some data, taxa names working directory for animal_root
DOI: 10.6084/m9.figshare.13085081
title: naming_reconciliation

description: testing upload of some data, taxa names working directory for animal_root
DOI: 10.6084/m9.figshare.13118111
title: T4SSs, T4CP and ATPase sequences

description: This file contains the well-described archetypes of the T4SSs, T4CP and ATPase sequences<br><br>
DOI: 10.6084/m9.figshare.13118111.v1
title: T4SSs, T4CP and ATPase sequences

description: This file contains the well-described archetypes of the T4SSs, T4CP and ATPase sequences<br><br>
DOI: 10.34760/5f5b7d6f24181
title: Learning by Moving

description: The overall aim of the Learning by Moving study is to investigate the effects of two types of physical activity on cardiovascular fitness, gross motor skills, cognitive functions, academic achievement, brain structure, and brain functioning in 8-10-year-old typically developing children. Furthermore, relateions between the physical and cognitive domain will be investigated.
DOI: 10.17632/xkv7w9hxx8.1
title: Data for: Identifying the digital health capabilities in the Australian allied health workforce: A meta-synthesis of competency standards

description: Extract digital health and information management statements from allied health professional standards (Australia)
DOI: 10.6084/m9.figshare.7987418.v1
title: Direction Dependence Analysis in the Presence of Confounders: Applications to Linear Mediation Models Using Observational Data

description: Statistical methods to identify mis-specifications of linear regression models with respect to the direction of dependence (i.e. whether x→y or y→x better approximates the data-generating mechanism) have received considerable attention. Direction dependence analysis (DDA) constitutes such a statistical tool and makes use of higher-moment information of variables to derive statements concerning directional model mis-specifications in observational data. Previous studies on direction of dependence mainly focused on statistical inference and guidelines for the selection from the two directionally competing candidate models (x→y versus y→x) while assuming the absence of unobserved common causes. The present study describes properties of DDA when confounders are present and extends existing DDA methodology by incorporating the confounder model as a possible explanation. We show that all three explanatory models can be uniquely identified under standard DDA assumptions. Further, we discuss the proposed approach in the context of testing competing mediation models and evaluate an organizational model proposing a mediational relation between school leadership and student achievement via school safety using observational data from an urban school district. Overall, DDA provides strong empirical support that school safety has indeed a causal effect on student achievement but suggests that important confounders are present in the school leadership–safety relation.