cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11558607
title: Supplementary Material for: Screening for More than 1,000 Pesticides and Environmental Contaminants in Cannabis by GC/Q-TOF

description: A method has been developed to screen cannabis extracts for more than 1,000 pesticides and environmental pollutants using a gas chromatograph coupled to a high-resolution accurate mass quadrupole time-of-flight mass spectrometer (GC/Q-TOF). An extraction procedure was developed using acetonitrile with solid phase extraction cleanup. Before analysis, extracts were diluted 125:1 with solvent. Two data mining approaches were used together with a retention-time-locked Personal Compound Database and Library (PCDL) containing high-resolution accurate mass spectra for pesticides and other environmental pollutants. (1) A Find-by-Fragments (FbF) software tool extracts several characteristic exact mass ions within a small retention time window where the compound elutes. For each compound in the PCDL, the software evaluates the peak shape and retention time of each ion as well as the monoisotopic exact mass, ion ratios, and other factors to decide if the compound is present or not. (2) A separate approach used Unknowns Analysis (UA) software with a peak-finding algorithm called SureMass to deconvolute peaks in the chromatogram. The accurate mass spectra were searched against the PCDL using spectral matching and retention time as filters. A subset PCDL was generated containing only pesticides that are most likely to be found on foods in the US. With about 250 compounds in the smaller PCDL, there were fewer hits for non-pesticides, and data review was much faster. Organically grown cannabis was used for method development. Twenty-one confiscated cannabis samples were analyzed and ten were found to have no detectable pesticides. The remaining 11 samples had at least one pesticide and one sample had seven detectable residues. Quantitative analysis was run on the confiscated samples for a subset of the pesticides found by screening. Two cannabis samples had residues of carbaryl and malathion that were estimated to be about 10 times greater than the highest US Environmental Protection Agency tolerance set for food and about 4,000 times greater than the Canadian maximum residue limits for dried cannabis flower.
DOI: 10.6084/m9.figshare.11558604
title: Role of resilience and emotional control in relation to mental health in people with cancer

description: This study explored the relationship between emotional control, resilience and mental health in cancer patients.
DOI: 10.6084/m9.figshare.11558607.v1
title: Supplementary Material for: Screening for More than 1,000 Pesticides and Environmental Contaminants in Cannabis by GC/Q-TOF

description: A method has been developed to screen cannabis extracts for more than 1,000 pesticides and environmental pollutants using a gas chromatograph coupled to a high-resolution accurate mass quadrupole time-of-flight mass spectrometer (GC/Q-TOF). An extraction procedure was developed using acetonitrile with solid phase extraction cleanup. Before analysis, extracts were diluted 125:1 with solvent. Two data mining approaches were used together with a retention-time-locked Personal Compound Database and Library (PCDL) containing high-resolution accurate mass spectra for pesticides and other environmental pollutants. (1) A Find-by-Fragments (FbF) software tool extracts several characteristic exact mass ions within a small retention time window where the compound elutes. For each compound in the PCDL, the software evaluates the peak shape and retention time of each ion as well as the monoisotopic exact mass, ion ratios, and other factors to decide if the compound is present or not. (2) A separate approach used Unknowns Analysis (UA) software with a peak-finding algorithm called SureMass to deconvolute peaks in the chromatogram. The accurate mass spectra were searched against the PCDL using spectral matching and retention time as filters. A subset PCDL was generated containing only pesticides that are most likely to be found on foods in the US. With about 250 compounds in the smaller PCDL, there were fewer hits for non-pesticides, and data review was much faster. Organically grown cannabis was used for method development. Twenty-one confiscated cannabis samples were analyzed and ten were found to have no detectable pesticides. The remaining 11 samples had at least one pesticide and one sample had seven detectable residues. Quantitative analysis was run on the confiscated samples for a subset of the pesticides found by screening. Two cannabis samples had residues of carbaryl and malathion that were estimated to be about 10 times greater than the highest US Environmental Protection Agency tolerance set for food and about 4,000 times greater than the Canadian maximum residue limits for dried cannabis flower.
DOI: 10.6084/m9.figshare.11558604.v1
title: Role of resilience and emotional control in relation to mental health in people with cancer

description: This study explored the relationship between emotional control, resilience and mental health in cancer patients.
DOI: 10.6084/m9.figshare.11558592
title: Multisensory Interactions in Virtual Reality: Optic flow reduces vestibular sensitivity, but only for congruent planes of motion

description: During exposure to Virtual Reality (VR) a sensory conflict may be present, whereby the visual system signals that the user is moving in a certain direction with a certain acceleration, while the vestibular system signals that the user is stationary. In order to reduce this conflict, the brain may down-weight vestibular signals, which may in turn affect vestibular contributions to self-motion perception. Here we investigated whether vestibular perceptual sensitivity is affected by VR exposure. Participants’ ability to detect artificial vestibular inputs was measured during optic flow or random motion stimuli on a VR head-mounted display. Sensitivity to vestibular signals was significantly reduced when optic flow stimuli were presented, but importantly this was only the case when both visual and vestibular cues conveyed information on the same plane of self-motion. Our results suggest that the brain dynamically adjusts the weight given to incoming sensory cues for self-motion in VR; however this is dependent on the congruency of visual and vestibular cues.
DOI: 10.6084/m9.figshare.11558592.v1
title: Multisensory Interactions in Virtual Reality: Optic flow reduces vestibular sensitivity, but only for congruent planes of motion

description: During exposure to Virtual Reality (VR) a sensory conflict may be present, whereby the visual system signals that the user is moving in a certain direction with a certain acceleration, while the vestibular system signals that the user is stationary. In order to reduce this conflict, the brain may down-weight vestibular signals, which may in turn affect vestibular contributions to self-motion perception. Here we investigated whether vestibular perceptual sensitivity is affected by VR exposure. Participants’ ability to detect artificial vestibular inputs was measured during optic flow or random motion stimuli on a VR head-mounted display. Sensitivity to vestibular signals was significantly reduced when optic flow stimuli were presented, but importantly this was only the case when both visual and vestibular cues conveyed information on the same plane of self-motion. Our results suggest that the brain dynamically adjusts the weight given to incoming sensory cues for self-motion in VR; however this is dependent on the congruency of visual and vestibular cues.
DOI: 10.17028/rd.lboro.11558556
title: Additional artefact: database of Ladybird books' titles

description: Microsoft access database containing details of books published by Ladybird between 1914 and 2009.<br>Appendix to doctoral thesisAbstract:The research undertaken for this project relates to the history of the 'Ladybird' imprint together with the company that produced these popular children's books. The period, from 1914 to present day, during which the books were produced, and throughout which the company operated, was one of great technological change in the print industry as well as one of great social change, and the company was shaped by many outside factors. In turn, its books were widely read and, arguably, themselves influenced generations of children. The research covers the books and the company from the mid-nineteenth century to the present day. Various factors that have influenced the company and its books, such as the British education system, the First and Second World wars, changes in print and communications technology, the British library system and bookselling practices, evolving social and political attitudes, the impact of the media and the company's competitors, have all been taken into account. The ways in which the brand has emerged and evolved is discussed within the context of commercial, social and political factors.<br>
DOI: 10.17028/rd.lboro.11558556.v1
title: Additional artefact: database of Ladybird books' titles

description: Microsoft access database containing details of books published by Ladybird between 1914 and 2009.<br>Appendix to doctoral thesisAbstract:The research undertaken for this project relates to the history of the 'Ladybird' imprint together with the company that produced these popular children's books. The period, from 1914 to present day, during which the books were produced, and throughout which the company operated, was one of great technological change in the print industry as well as one of great social change, and the company was shaped by many outside factors. In turn, its books were widely read and, arguably, themselves influenced generations of children. The research covers the books and the company from the mid-nineteenth century to the present day. Various factors that have influenced the company and its books, such as the British education system, the First and Second World wars, changes in print and communications technology, the British library system and bookselling practices, evolving social and political attitudes, the impact of the media and the company's competitors, have all been taken into account. The ways in which the brand has emerged and evolved is discussed within the context of commercial, social and political factors.<br>
DOI: 10.6084/m9.figshare.12841778
title: The behavioral challenge of COVID-19 - DATA.xlxs from The behavioural challenge of the COVID-19 pandemic: indirect measurements and personalized attitude changing treatments (IMPACT)

description: Raw data and derived variables described in the manuscript
DOI: 10.6084/m9.figshare.12841778.v1
title: The behavioral challenge of COVID-19 - DATA.xlxs from The behavioural challenge of the COVID-19 pandemic: indirect measurements and personalized attitude changing treatments (IMPACT)

description: Raw data and derived variables described in the manuscript
DOI: 10.6084/m9.figshare.11558502
title: Land use land cover change and the comparative impact of co-management and government-management on the forest cover in Malawi (1999-2018)

description: Miombo Woodland is the major Land use/land cover with important ecological functions in Africa. In Malawi, government-management was designed to manage Woodlands. However, when illegal activities continued, Participatory Forest Management (co-management) in forest reserves was institutionalised for woodland sustainability. Currently, information on co-management mitigating deforestation and degradation is scant. This study assessed woodland/forest through Land use/land cover (LULC) classification across the country (Malawi); compared forest cover within and between strategies using 11 co-management and 12 government-management forest reserves across the country between 1999 and 2018. Overall accuracies were &gt;90%. Woodland net loses 8.4% (4.39–3.39 million ha) were to Plantation, Grassland and Agriculture transition intensities. Agriculture net gains 9.6% (1.87–3.00 million ha) were from Grassland, Settlement and Woodland transitions for the whole Malawi. Forest cover within co-management and government-management indicated loses. Sustainable management of degraded woodlands, integrated Agriculture and monitoring is encouraged. Further interpretation of transitions is recommended.
DOI: 10.6084/m9.figshare.11558502.v1
title: Land use land cover change and the comparative impact of co-management and government-management on the forest cover in Malawi (1999-2018)

description: Miombo Woodland is the major Land use/land cover with important ecological functions in Africa. In Malawi, government-management was designed to manage Woodlands. However, when illegal activities continued, Participatory Forest Management (co-management) in forest reserves was institutionalised for woodland sustainability. Currently, information on co-management mitigating deforestation and degradation is scant. This study assessed woodland/forest through Land use/land cover (LULC) classification across the country (Malawi); compared forest cover within and between strategies using 11 co-management and 12 government-management forest reserves across the country between 1999 and 2018. Overall accuracies were &gt;90%. Woodland net loses 8.4% (4.39–3.39 million ha) were to Plantation, Grassland and Agriculture transition intensities. Agriculture net gains 9.6% (1.87–3.00 million ha) were from Grassland, Settlement and Woodland transitions for the whole Malawi. Forest cover within co-management and government-management indicated loses. Sustainable management of degraded woodlands, integrated Agriculture and monitoring is encouraged. Further interpretation of transitions is recommended.
DOI: 10.6084/m9.figshare.11558472
title: Daily Global Solar Radiation in China Estimated from High-density Meteorological Observations: A Random Forest Model Framework

description: newly estimated DGSR data from High-density Meteorological Observations.This data is released by Yongjian to help Zhaoliang Zeng
DOI: 10.6084/m9.figshare.11558472.v1
title: Daily Global Solar Radiation in China Estimated from High-density Meteorological Observations: A Random Forest Model Framework

description: newly estimated DGSR data from High-density Meteorological Observations.This data is released by Yongjian to help Zhaoliang Zeng
DOI: 10.6084/m9.figshare.11558439
title: Metadata record for: The first high-resolution meteorological forcing dataset for land process studies over China

description: This dataset contains key characteristics about the data described in the Data Descriptor The first high-resolution meteorological forcing dataset for land process studies over China. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11558439.v2
title: Metadata record for: The first high-resolution meteorological forcing dataset for land process studies over China

description: This dataset contains key characteristics about the data described in the Data Descriptor The first high-resolution meteorological forcing dataset for land process studies over China. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11558439.v1
title: Metadata record for: The first high-resolution meteorological forcing dataset for land process studies over China

description: This dataset contains key characteristics about the data described in the Data Descriptor The first high-resolution meteorological forcing dataset for land process studies over China. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11558232
title: Overexpression of Seagrass Nucleotide Exchange Factor Gene <i>ZjFes1</i> Enhances Heat Tolerance in Transgenic <i>Arabidopsis</i>

description: Nucleotide exchange factors (NEFs) play an important role in plant abiotic stress response, but their characteristics and functions in seagrass have not been studied. <i>Zostera japonica</i> (<i>Z. japonica</i>) is one of the most widely distributed seagrass species in China and are distributed in subtropical and temperate coastal areas. <i>Z. japonica</i> is intertidal seagrass, which often undergoes heat stress during summer when the tide ebbs. Overexpression of <i>ZjFes1</i> in <i>Arabidopsis</i> results in an increase in heat tolerance. We found that ZjFes1 associates with ZjHsp70 <i>in vivo</i> by yeast two-hybrid and bimolecular fluorescence complementarity (BiFC). Overexpression of <i>ZjFes1</i> leads to selective reduction of <i>Hsp70</i> transcription and an increase in Hsp101. In conclusion, our results suggest that <i>ZjFes1</i> may be an active regulator of heat tolerance.
DOI: 10.6084/m9.figshare.11558232.v1
title: Overexpression of Seagrass Nucleotide Exchange Factor Gene <i>ZjFes1</i> Enhances Heat Tolerance in Transgenic <i>Arabidopsis</i>

description: Nucleotide exchange factors (NEFs) play an important role in plant abiotic stress response, but their characteristics and functions in seagrass have not been studied. <i>Zostera japonica</i> (<i>Z. japonica</i>) is one of the most widely distributed seagrass species in China and are distributed in subtropical and temperate coastal areas. <i>Z. japonica</i> is intertidal seagrass, which often undergoes heat stress during summer when the tide ebbs. Overexpression of <i>ZjFes1</i> in <i>Arabidopsis</i> results in an increase in heat tolerance. We found that ZjFes1 associates with ZjHsp70 <i>in vivo</i> by yeast two-hybrid and bimolecular fluorescence complementarity (BiFC). Overexpression of <i>ZjFes1</i> leads to selective reduction of <i>Hsp70</i> transcription and an increase in Hsp101. In conclusion, our results suggest that <i>ZjFes1</i> may be an active regulator of heat tolerance.
DOI: 10.6084/m9.figshare.11558208
title: Supplementary Material for: The Impact of <b><i>CYP24A1</i></b> Polymorphisms on Hypertension Susceptibility

description: <b><i>Background:</i></b> Hypertension is one of the leading causes of human death and disability. <i>CYP24A1</i> regulates vitamin D activity and is closely linked to hypertension. However, the relationship between <i>CYP24A1</i>polymorphisms and hypertension risk remains unclear. <b><i>Methods:</i></b> This case-control study included 503 hypertensive patients and 498 healthy controls from the Chinese Han population. The genotypes of <i>CYP24A1</i>polymorphisms were detected using the Agena MassARRAY method. The association between genetic variations of <i>CYP24A1</i>and hypertension risk was evaluated with odds ratios (OR) and 95% confidence intervals (CI) in genetic models. <b><i>Results:</i></b> We found that rs56229249 of <i>CYP24A1</i>significantly<i></i>decreased the hypertension risk in homozygote (OR 0.51, 95% CI 0.29–0.91,<i> p</i> = 0.022) and recessive models (OR 0.51, 95% CI 0.29–0.91,<i> p</i> = 0.023). Further stratification analyses indicated that hypertension risk is related to age and sex, rs2762934 polymorphism increases hypertension risk among younger subjects (&lt;61 years), and rs1977297 influences the risk of hypertension among older subjects (≥61 years). In addition, rs2762940 is related to hypertension risk in men, and rs56229249 is a protective factor against hypertension in women. <b><i>Conclusions:</i></b> Our study suggests that genetic variations of the <i>CYP24A1</i>gene were significantly associated with susceptibility to hypertension in the Chinese population.
DOI: 10.17045/sthlmuni.11558187
title: Bayesian NrdA phylogeny

description: <b>Bayesian phylogeny of NrdA, class I ribonucleotide reductase catalytic component.</b> Sequences from NCBI's RefSeq and Genbank databases (Haft et al. 2018; https://doi.org/10.1093/nar/gkx1068), downloaded March 2019, was searched with subclass specific HMMER (Eddy 2011; https://doi.org/10.1371/journal.pcbi.1002195) profiles for NrdA and NrdJ, class II RNR, serving as outgroup, (Lundin et al. in preparation). The resulting sequences were clustered at 60% identity with UCLUST (Edgar 2010; https://doi.org/10.1093/bioinformatics/btq461) to create a representative set of sequences. After manual inspection of sequences, 342 out of 27821 original NrdA sequences remained, plus 26 NrdJ sequences selected for aligning well to NrdA. The sequences were aligned with ProbCons (Do et al. 2005; https://doi.org/10.1101/gr.2821705) and 283 reliably aligned positions were selected with BMGE (Criscuolo & Gribaldo 2010; https://doi.org/10.1186/1471-2148-10-210) using the BLOSUM30 matrix. <br><br>The alignment file is NrdA_uc0.60.NrdJ_uc0.30_outgroup.intr.correct.nolb.co.profile.BLOSUM30.bmge.mb.nxs. <br>A bayesian phylogeny was estimated with MrBayes v. 3.2.6 (Ronquist & Huelsenbeck 2003; https://doi.org/10.1093/bioinformatics/btg180; https://github.com/NBISweden/MrBayes) using a gamma distribution for rate variation and rjMCMC to jump between amino acid models. MrBayes was run with four chains and five runs until average standard deviation of split frequencies reached 0.015. (See NrdA_uc0.60.NrdJ_uc0.30_outgroup.intr.correct.nolb.co.profile.BLOSUM30.bmge.mb.) <br><br>The phylogeny, in Dendroscope (Huson et al. 2007; https://doi.org/10.1186/1471-2105-8-460) nexml format, isNrdA_uc0.60.NrdJ_uc0.30_outgroup.intr.correct.nolb.co.profile.BLOSUM30.bmge.mb.con.fullname.nexml .
DOI: 10.17045/sthlmuni.11558187.v1
title: Bayesian NrdA phylogeny

description: <b>Bayesian phylogeny of NrdA, class I ribonucleotide reductase catalytic component.</b> Sequences from NCBI's RefSeq and Genbank databases (Haft et al. 2018; https://doi.org/10.1093/nar/gkx1068), downloaded March 2019, was searched with subclass specific HMMER (Eddy 2011; https://doi.org/10.1371/journal.pcbi.1002195) profiles for NrdA and NrdJ, class II RNR, serving as outgroup, (Lundin et al. in preparation). The resulting sequences were clustered at 60% identity with UCLUST (Edgar 2010; https://doi.org/10.1093/bioinformatics/btq461) to create a representative set of sequences. After manual inspection of sequences, 342 out of 27821 original NrdA sequences remained, plus 26 NrdJ sequences selected for aligning well to NrdA. The sequences were aligned with ProbCons (Do et al. 2005; https://doi.org/10.1101/gr.2821705) and 283 reliably aligned positions were selected with BMGE (Criscuolo & Gribaldo 2010; https://doi.org/10.1186/1471-2148-10-210) using the BLOSUM30 matrix. <br><br>The alignment file is NrdA_uc0.60.NrdJ_uc0.30_outgroup.intr.correct.nolb.co.profile.BLOSUM30.bmge.mb.nxs. <br>A bayesian phylogeny was estimated with MrBayes v. 3.2.6 (Ronquist & Huelsenbeck 2003; https://doi.org/10.1093/bioinformatics/btg180; https://github.com/NBISweden/MrBayes) using a gamma distribution for rate variation and rjMCMC to jump between amino acid models. MrBayes was run with four chains and five runs until average standard deviation of split frequencies reached 0.015. (See NrdA_uc0.60.NrdJ_uc0.30_outgroup.intr.correct.nolb.co.profile.BLOSUM30.bmge.mb.) <br><br>The phylogeny, in Dendroscope (Huson et al. 2007; https://doi.org/10.1186/1471-2105-8-460) nexml format, isNrdA_uc0.60.NrdJ_uc0.30_outgroup.intr.correct.nolb.co.profile.BLOSUM30.bmge.mb.con.fullname.nexml .
DOI: 10.26180/5e16d5aadf912
title: Sediment_core_data.xlsx

description: Sediment Core Willsmere Billabong Data<br>
DOI: 10.6084/m9.figshare.11558004
title: MOESM9 of The transcriptome of Pinus pinaster under Fusarium circinatum challenge

description: Additional file 9. Clustering of Pinus pinaster and Fusarium circinatum differential expressed (DE) genes. For each cluster with gene ontology (GO) enriched terms, number of genes and percentage for genes are indicated.