cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.et8j74
title: Occurrence Download

description: A dataset containing 176 records in GBIF matching the query:
SELECT
 '200' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 4.045127286108716
 AND decimalLatitude &lt;= 8.098015256935714
 AND decimalLongitude &gt;= 39.97255587959733
 AND decimalLongitude &lt;= 45.17848318098086
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 176 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008065-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edeeh5
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galagania gracilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008085-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zppm8
title: Occurrence Download

description: A dataset containing 2466 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelonoidis carbonarius",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 2466 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008083-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7p2sw3
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis roosevelti"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008086-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/dpko3i
title: National Gentrification Intensity Map

description: This replication data supports multiple publications related to the National Gentrification Intensity Map project. The project seeks to map degrees of gentrification intensity across a national geography of cities and a diverse set of neighborhood types. The map uses open-source tools and open data APIs to build a longitudinal tract database of gentrification indicators. There are two products:

1) Gentrification patterns 1990-2020: Gentrification indicators from 1990 to 2020, adjusted to 2020 census tract boundaries. This is based on Decennial Census and American Community Survey data, drawn from National Historical GIS using the IPUMS API. Crosswalks are based on the NHGIS Geographic Crosswalk methodology. It covers ~56,000 census tracts in ~880 core-based statistical areas, with all data crosswalked to 2020 census boundaries. We recommend using this version of the map for most applications. 

2) Historic data 1970-2020: Gentrification indicators from 1970 to 2020, adjusted to 2010 census tract boundaries. This is based on Decennial Census and American Community Survey data, drawn from from National Historical GIS using the IPUMS API. Crosswalks are based on methods from both NHGIS Geographic Crosswalks and the Longitudinal Tract Data Base. It covers ~49,500 census tracts in ~860 core-based statistical areas, with all data crosswalked to 2010 census boundaries. While this map may be useful for historical research, we do not recommend using it for most applications due to spatial noise introduced through the geographic crosswalking method.
description: To replicate:

Both versions of the map are available under files tagged 01_data. Geographic boundary data are available in geopackage format, and open-source format readable in most GIS software. Attribute data for each census tract are hosted in csv format. They can be joined to the spatial data using FIPS codes. 

Replication code the for entire workflow is available under files tagged 02_code. The statistical workflow runs on R, primarily using ipumsr for querying APIs, dplyr for data management, and psych and cluster for calculating gentrification scores. The spatial boundary files are developed in Python, primarily using ipumpspy and requests for querying APIs and geopandas for geoprocessing. Each script defines its required packages, uses the IPUMS API to call source data, and uses project-oriented workflows with relative file paths. 

For more detailed documentation -- and code updates -- see https://github.com/johnlauermann/gentrification-intensity-map
DOI: 10.15468/dl.2tekvx
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geocaryum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 546 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008088-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkr8b4
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelonoidis chilensis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 218 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008089-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ve63vt
title: Occurrence Download

description: A dataset containing 2026834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-125 25, -66 25, -66 49, -125 49, -125 25))",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2026834 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008074-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00012523.0
title: Available datapackage for study 'Bioinformatics Framework for Wastewater-based Surveillance of Infectious Diseases'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.s4vbc3
title: Occurrence Download

description: A dataset containing 1440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelonoidis denticulatus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 1440 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008091-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.we29du
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gingidia montana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 220 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008092-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14596988
title: Indonesian Hoax News Dataset
DOI: 10.4211/hs.e7240e769bb14257950cef6d3e8aa375
title: Numerical model to simulate groundwater response to ice sheet decline

description: This resource provides FlexPDE numerical model files used to assess how ice-sheet loading influences subsurface hydraulic head and salinity distributions in coastal aquifers. The model setup builds on the foundational framework described by Bense & Person (2008) and solves coupled, two-dimensional, variable-density groundwater flow and solute transport equations with mechanical loading. The archive includes spin-up runs, full simulation input files, and metadata documenting the simulation workflow.
DOI: 10.15468/dl.rn7a9s
title: Occurrence Download

description: A dataset containing 1185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelonoidis niger",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 1185 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008094-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shrxvb
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glaucosciadium cordifolium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008095-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4211/hs.82c2b15884b04af49cff6cdc8c261cb0
title: Gila River topographic, vegetation and alluvial groundwater data

description: In arid regions with limited water supplies like the Colorado River basin of the southwestern U.S., healthy riparian ecosystems may seem in conflict with human water use. However, this is not always the case; indeed, they may be interdependent. In this paper, we use a long-term dataset of topographic, vegetation, and groundwater data collected over water years 2011–2021 to demonstrate recovery of functional connectivity between a river and its floodplain despite previous human impacts and continued human use. In the Cliff-Gila Valley of southwestern New Mexico, historical levee construction after 1940 profoundly altered the floodplain and river channel of the Gila River, a Colorado River tributary. This work ceased by the mid-1980s and over time, river anastomosis during subsequent floods reclaimed the broader floodplain, regenerating diverse native habitat. The study period spanned two high-flow events, numerous smaller floods, and seasonal dry periods. Even the lowest perennial flows (0.4–0.6 m3 s-1) sustained favorable rates of groundwater recession, supporting riparian seedling recruitment in the topographic lows created by floodplain secondary channels. Alluvial groundwater receded more sharply in a reach seasonally dewatered by irrigation diversions, but seepage through diversion structures and unlined ditches provided small yet important sources of hyporheic flow. This study demonstrates that the river’s natural flow regime (or a similar range of seasonal flows) creates conditions where human activities co-exist with robust native habitat and highlights the importance of long-term datasets for documenting ecosystem resilience, including to hydrologic drought and ongoing climate change.
DOI: 10.34740/kaggle/dsv/14596998
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.e555ts
title: Occurrence Download

description: A dataset containing 544349 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scolopax minor"
 ]
}

 The dataset includes 544349 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008062-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rnb3xg
title: Occurrence Download

description: A dataset containing 7383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chersina angulata",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 7383 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008096-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdpv54
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glehnia littoralis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 434 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008097-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31141345.v1
title: SNPeff annotated VCF files

description: SNPeff annotated VCF files. These are unfiltered and contain all variants called by DeepVariant.
DOI: 10.6084/m9.figshare.31141345
title: SNPeff annotated VCF files

description: SNPeff annotated VCF files. These are unfiltered and contain all variants called by DeepVariant.
DOI: 10.6084/m9.figshare.31130641
title: AI-Ready Drug Response Dataset

description: This is a drug response dataset suitable for AI-model training. See CSA-and-PharmacoGx-Integration/README.md at main · vincevelle/CSA-and-PharmacoGx-Integration and IMPROVE for more details.Contains ~54,000 compounds, ~6 million drug response experiments, and ~2000 gene expressions samples.<br><b>References</b>[1] Smirnov, Petr, et al. ”PharmacoDB: an integrative database for mining in vitro anticancer drug screen ing studies.” Nucleic Acids Research (2017). [2] Smirnov, Petr, et al. ”PharmacoGx: an R package for analysis of large pharmacogenomic datasets.” Bioinformatics 32.8 (2015): 1244-1246. [3] Alexander Partin and Priyanka Vasanthakumari et al., Benchmarking community drug response pre diction models: datasets, models, tools, and metrics for cross-dataset generalization analysis, Briefings in Bioinformatics, Volume 27, Issue 1, January 2026, bbaf667, https://doi.org/10.1093/bib/bbaf667 [4] Partin A, Brettin TS, Zhu Y, Narykov O, Clyde A, Overbeek J, et al. Deep learning methods for drug response prediction in cancer: predominant and emerging trends. Frontiers in medicine. 2023;10:1086097.
DOI: 10.5281/zenodo.18355642
title: Adaptation to soil and climate mediate responses to water limitation in a serpentine-tolerant plant

description: This code and datasets pertain to the manuscript entitled: Adaptation to soil and climate mediate responses to water limitation in a serpentine-tolerant plant, by Erin Hall and Sevan Suni. For her MS thesis in the Suni Lab, Erin Hall collected seeds from Antirrhinum vexillocalyculatum plants at four field sites in the San Francisco Bay Area that differ in temperature and precipitation. Two northern sites were colder and wetter and two southern sites were hotter and drier. The northern and southern sites contained one serpentine and one non-serpentine site. E. Hall brought the seeds back to the USF greenhouse and planted them on 09/16/2021. She let the plants self and collected seeds. The code allows for the assessment of effects of soil, climate, and water limitation on plant functional traits.
DOI: 10.5281/zenodo.18355643
title: Adaptation to soil and climate mediate responses to water limitation in a serpentine-tolerant plant

description: This code and datasets pertain to the manuscript entitled: Adaptation to soil and climate mediate responses to water limitation in a serpentine-tolerant plant, by Erin Hall and Sevan Suni. For her MS thesis in the Suni Lab, Erin Hall collected seeds from Antirrhinum vexillocalyculatum plants at four field sites in the San Francisco Bay Area that differ in temperature and precipitation. Two northern sites were colder and wetter and two southern sites were hotter and drier. The northern and southern sites contained one serpentine and one non-serpentine site. E. Hall brought the seeds back to the USF greenhouse and planted them on 09/16/2021. She let the plants self and collected seeds. The code allows for the assessment of effects of soil, climate, and water limitation on plant functional traits.
DOI: 10.6084/m9.figshare.31130641.v5
title: AI-Ready Drug Response Dataset

description: This is a drug response dataset suitable for AI-model training. See CSA-and-PharmacoGx-Integration/README.md at main · vincevelle/CSA-and-PharmacoGx-Integration and IMPROVE for more details.Contains ~54,000 compounds, ~6 million drug response experiments, and ~2000 gene expressions samples.<br><b>References</b>[1] Smirnov, Petr, et al. ”PharmacoDB: an integrative database for mining in vitro anticancer drug screen ing studies.” Nucleic Acids Research (2017). [2] Smirnov, Petr, et al. ”PharmacoGx: an R package for analysis of large pharmacogenomic datasets.” Bioinformatics 32.8 (2015): 1244-1246. [3] Alexander Partin and Priyanka Vasanthakumari et al., Benchmarking community drug response pre diction models: datasets, models, tools, and metrics for cross-dataset generalization analysis, Briefings in Bioinformatics, Volume 27, Issue 1, January 2026, bbaf667, https://doi.org/10.1093/bib/bbaf667 [4] Partin A, Brettin TS, Zhu Y, Narykov O, Clyde A, Overbeek J, et al. Deep learning methods for drug response prediction in cancer: predominant and emerging trends. Frontiers in medicine. 2023;10:1086097.
DOI: 10.6084/m9.figshare.31130641.v4
title: AI-Ready Drug Response Dataset

description: This is a drug response dataset suitable for AI-model training. See CSA-and-PharmacoGx-Integration/README.md at main · vincevelle/CSA-and-PharmacoGx-Integration and IMPROVE for more details.Contains ~54,000 compounds, ~6 million drug response experiments, and ~2000 gene expressions samples.<br><b>References</b>[1] Smirnov, Petr, et al. ”PharmacoDB: an integrative database for mining in vitro anticancer drug screen ing studies.” Nucleic Acids Research (2017). [2] Smirnov, Petr, et al. ”PharmacoGx: an R package for analysis of large pharmacogenomic datasets.” Bioinformatics 32.8 (2015): 1244-1246. [3] Alexander Partin and Priyanka Vasanthakumari et al., Benchmarking community drug response pre diction models: datasets, models, tools, and metrics for cross-dataset generalization analysis, Briefings in Bioinformatics, Volume 27, Issue 1, January 2026, bbaf667, https://doi.org/10.1093/bib/bbaf667 [4] Partin A, Brettin TS, Zhu Y, Narykov O, Clyde A, Overbeek J, et al. Deep learning methods for drug response prediction in cancer: predominant and emerging trends. Frontiers in medicine. 2023;10:1086097.
DOI: 10.25934/pr00012524.0
title: Available datapackage for study 'Wastewater Assessment for Coronavirus in Kentucky: Implementing Enhanced Surveillance Technology'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.3n28un
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eugenia citrifolia"
 ]
}

 The dataset includes 156 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008098-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywnsgy
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chersobius boulengeri",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation)"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008100-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucuf5u
title: Occurrence Download

description: A dataset containing 9 records in GBIF matching the query:
SELECT
 '201' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 4.045127286108716
 AND decimalLatitude &lt;= 8.098015256935714
 AND decimalLongitude &gt;= 44.969125364547
 AND decimalLongitude &lt;= 50.19831464553429
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 9 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008087-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asg2qm
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glia prolifera",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008101-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/0am6-8907
title: F10565+2448 MIRI/MRS Observations
DOI: 10.5281/zenodo.18351737
title: Comparative analysis of AHP and machine learning methods for mapping environmental fragility in a river basin in Rondônia, Northern Brazil
DOI: 10.5281/zenodo.18351736
title: Comparative analysis of AHP and machine learning methods for mapping environmental fragility in a river basin in Rondônia, Northern Brazil