cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9n23d4s
title: National Assessment of Oil and Gas Project - San Juan Basin Province (022) Boundary

description: The USGS Central Region Energy Team assesses oil and gas resources of the United States. The onshore and State water areas of the United States comprise 71 provinces. Within these provinces, Total Petroleum Systems are defined and Assessment Units are defined and assessed. Each of these provinces is defined geologically, and most province boundaries are defined by major geologic changes. The San Juan Basin Province is located in South Western Colorado and North Western New Mexico, encompassing all or parts of Montezuma, La Plata, and Archuletta Counties in Colorado and all or parts of San Juan, Rio Arriba, Sandoval, Mckinley, Bernalillo, and Cibola Counties in New Mexico. The main population centers within the study area are Durango Colo.; and Farmington, New Mexico. The San Juan River and Animas River and their tributaries drain the area. The province boundary was drawn to include the geologic structures generally considered to be in or bounding the San Juan Basin
DOI: 10.5281/zenodo.4783151
title: A (nominally) 11 Å reconstruction of the in situ E. coli chemosensory array

description: A (nominally) 11 Å reconstruction of the in situ E. coli chemosensory array from cryo-electron tomography data of E. coli minicells. Final reconstruction performed in M. Intermediate steps performed in Warp, Dynamo, IMOD, RELION, M. Analysis described in https://doi.org/10.1101/2021.01.31.428990.
DOI: 10.5281/zenodo.4783150
title: A (nominally) 11 Å reconstruction of the in situ E. coli chemosensory array

description: A (nominally) 11 Å reconstruction of the in situ E. coli chemosensory array from cryo-electron tomography data of E. coli minicells. Final reconstruction performed in M. Intermediate steps performed in Warp, Dynamo, IMOD, RELION, M. Analysis described in https://doi.org/10.1101/2021.01.31.428990.
DOI: 10.5066/p9y2j3ml
title: National Assessment of Oil and Gas Project - Montana Thrust Belt Province (027) Boundary

description: The USGS Central Region Energy Team assesses oil and gas resources of the United States. The onshore and State water areas of the United States comprise 71 provinces. Within these provinces, Total Petroleum Systems are defined and Assessment Units are defined and assessed. Each of these provinces is defined geologically, and most province boundaries are defined by major geologic changes. The Montana Thrust Belt Province is located in western Montana, encompassing all or parts of Beaverhead, Broadwater, Cascade, Deer Lodge, Flathead, Gallatin, Glacier, Granite, Jefferson, Lake, Lewis and Clark, Lincoln, Madison, Meagher, Mineral, Missoula, Park, Pondera, Powell, Ravalli, Sanders, Silver Bow, and Teton counties in Montana. The main population centers (greater than 15,000 residents) within the study area are Butte, Helena, Kalispell, and Missoula. The main highways, I-90 and I-15 generally traverse the area from east to west and north to south, respectively. The province boundary was drawn to include the geologic structures generally considered to be in or bounding the Montana Thrust Belt basin, including the Thrust Belt, Helena Salient, Blacktail Salient, and Tertiary Basins.
DOI: 10.6084/m9.figshare.13302822
title: Under-ice respiration rates shift the annual carbon cycle in the mixed layer of an oligotrophic lake from autotrophy to heterotrophy

description: Ecosystem metabolism is an integrative measure of the production and respiration of carbon in aquatic ecosystems. However, under-ice regions and mixing periods are infrequently sampled because of logistical challenges and assumptions of low biological activity, resulting in limited understanding of the contribution of winter epilimnetic metabolism to annual carbon cycling. Aquatic ecosystems can emit up to 76% of the carbon they receive from terrestrial landscapes as carbon dioxide to the atmosphere, making them significant contributors to Earth’s carbon cycle. Consequently, studying metabolism under ice is especially important given that warmer winters have already shortened ice cover and lengthened ice transitional periods, potentially resulting in greater carbon dioxide emissions. Using a continuous year of epilimnetic high-frequency dissolved oxygen data, we found that gross primary production was low but not absent under ice and increased during the end of the under-ice period. Despite cold water temperatures, under-ice respiration was 1.2 times higher than summer respiration, and ice-on and ice-off periods were important contributors to annual metabolism estimates. On average, under-ice net ecosystem production (NEP) was negative, in contrast to positive NEP for the spring and summer periods. Including winter metabolism estimates flipped annual NEP from autotrophy to heterotrophy, demonstrating that year-round sampling is essential for accurately assessing carbon cycling in lakes.
DOI: 10.6084/m9.figshare.13302822.v1
title: Under-ice respiration rates shift the annual carbon cycle in the mixed layer of an oligotrophic lake from autotrophy to heterotrophy

description: Ecosystem metabolism is an integrative measure of the production and respiration of carbon in aquatic ecosystems. However, under-ice regions and mixing periods are infrequently sampled because of logistical challenges and assumptions of low biological activity, resulting in limited understanding of the contribution of winter epilimnetic metabolism to annual carbon cycling. Aquatic ecosystems can emit up to 76% of the carbon they receive from terrestrial landscapes as carbon dioxide to the atmosphere, making them significant contributors to Earth’s carbon cycle. Consequently, studying metabolism under ice is especially important given that warmer winters have already shortened ice cover and lengthened ice transitional periods, potentially resulting in greater carbon dioxide emissions. Using a continuous year of epilimnetic high-frequency dissolved oxygen data, we found that gross primary production was low but not absent under ice and increased during the end of the under-ice period. Despite cold water temperatures, under-ice respiration was 1.2 times higher than summer respiration, and ice-on and ice-off periods were important contributors to annual metabolism estimates. On average, under-ice net ecosystem production (NEP) was negative, in contrast to positive NEP for the spring and summer periods. Including winter metabolism estimates flipped annual NEP from autotrophy to heterotrophy, demonstrating that year-round sampling is essential for accurately assessing carbon cycling in lakes.
DOI: 10.5066/p9nvq0x0
title: National Assessment of Oil and Gas Project - Powder River Basin Province (033) Anna Lineaments

description: This dataset represents lineaments in the Powder River Basin as identified in the following U.S. Geological Survey Professional Paper: Anna, L.O., 1986, Geologic framework of the ground water system in Jurassic and Cretaceous rocks on the Northern Great Plains, in parts of Montana, North Dakota, South Dakota, and Wyoming: U.S. Geological Survey Professional Paper 1402-B, 36 p. A lineament is defined as a linear topographic feature of regional extent that is believed to reflect crustal structure (Hobbs et al., 1976, p. 267). Lineament features were transferred from the publication to a hard-copy base map by province geologist, then digitized and referenced for use in a Geographic Information System (GIS). Lineaments may: 1) enhance secondary reservoir permeability and 2) provide migration pathways in unconventional rocks.
DOI: 10.6084/m9.figshare.12854201
title: Effect of precipitation-influenced river influx on Lake Biwa water levels: time scale analysis based on an impulse response function

description: Lake water levels fluctuate at time scales ranging from minutes to many years. While extensive research has been devoted to seasonal and multiannual time scales, we examined water level changes at time scales of minutes to hours. By applying impulse response functions to Lake Biwa and its catchment, we demonstrated that it is possible to (1) identify the effects of natural oscillations governed by the shape of the lake, (2) determine the precipitation retention time at the surface (above the impermeable layer) of the catchment, and (3) estimate how long it takes precipitation falling in catchment areas to reach the lake. Between 2010 and 2012 we recorded water levels at high frequency in the South Basin of Lake Biwa and calculated response functions between precipitation and water levels. We categorized the delay time determined from the calculated response functions as direct precipitation on the lake, seiches, and river inflow (surface flow, return inflow). We then identified the runoff patterns of surface and return flows by considering the time scale of the delay. The method used in this study enables flood predictions in cases involving heavy rain and appropriate planning of preventive measures against flood damage. These results will be valuable for the development of management strategies to respond to climate change in lake catchment systems.
DOI: 10.6084/m9.figshare.12854201.v2
title: Effect of precipitation-influenced river influx on Lake Biwa water levels: time scale analysis based on an impulse response function

description: Lake water levels fluctuate at time scales ranging from minutes to many years. While extensive research has been devoted to seasonal and multiannual time scales, we examined water level changes at time scales of minutes to hours. By applying impulse response functions to Lake Biwa and its catchment, we demonstrated that it is possible to (1) identify the effects of natural oscillations governed by the shape of the lake, (2) determine the precipitation retention time at the surface (above the impermeable layer) of the catchment, and (3) estimate how long it takes precipitation falling in catchment areas to reach the lake. Between 2010 and 2012 we recorded water levels at high frequency in the South Basin of Lake Biwa and calculated response functions between precipitation and water levels. We categorized the delay time determined from the calculated response functions as direct precipitation on the lake, seiches, and river inflow (surface flow, return inflow). We then identified the runoff patterns of surface and return flows by considering the time scale of the delay. The method used in this study enables flood predictions in cases involving heavy rain and appropriate planning of preventive measures against flood damage. These results will be valuable for the development of management strategies to respond to climate change in lake catchment systems.
DOI: 10.6084/m9.figshare.12854201.v1
title: Effect of precipitation-influenced river influx on Lake Biwa water levels: time scale analysis based on an impulse response function

description: Lake water levels fluctuate at time scales ranging from minutes to many years. While extensive research has been devoted to seasonal and multiannual time scales, we examined water level changes at time scales of minutes to hours. By applying impulse response functions to Lake Biwa and its catchment, we demonstrated that it is possible to (1) identify the effects of natural oscillations governed by the shape of the lake, (2) determine the precipitation retention time at the surface (above the impermeable layer) of the catchment, and (3) estimate how long it takes precipitation falling in catchment areas to reach the lake. Between 2010 and 2012 we recorded water levels at high frequency in the South Basin of Lake Biwa and calculated response functions between precipitation and water levels. We categorized the delay time determined from the calculated response functions as direct precipitation on the lake, seiches, and river inflow (surface flow, return inflow). We then identified the runoff patterns of surface and return flows by considering the time scale of the delay. The method used in this study enables flood predictions in cases involving heavy rain and appropriate planning of preventive measures against flood damage. These results will be valuable for the development of management strategies to respond to climate change in lake catchment systems.
DOI: 10.5066/p9cihfvv
title: National Assessment of Oil and Gas Project - Powder River Basin Province (033) Boundary

description: The USGS Central Region Energy Team assesses oil and gas resources of the United States. The onshore and State water areas of the United States comprise 71 provinces. Within these provinces, Total Petroleum Systems are defined and Assessment Units are defined and assessed. Each of these provinces is defined geologically, and most province boundaries are defined by major geologic changes. The Powder River Basin Province is located in northeast Wyoming and southeast Montana with some assessment units extending beyond the existing province boundary into small areas of southwest South Dakota and northwest Nebraska. The province encompasses all or parts of Big Horn, Campbell, Carter, Converse, Crook, Custer, Fall River, Fallon, Johnson, Natrona, Niobrara, Powder River, Rosebud, Sheridan, Sioux, Treasure, Weston, and Yellowstone counties in the states listed above. Main population centers (greater than 15,000 residents) within the study area are Casper and Gillette, Wyoming. Interstate 90 generally traverses the province from east to west while I-25 runs north to south. The province boundary was drawn to include the geologic structures generally considered to be in or bounding the Powder River Basin along with some political boundaries as guides.
DOI: 10.5066/p9d40rvn
title: National Assessment of Oil and Gas Project - Powder River Basin Province (033) Maughan and Perry Lineaments

description: This dataset represents lineaments in the Powder River Basin as identified in the following publication: Maughan, E.K., and Perry, W.J., Jr., 1986, Lineaments and their tectonic implications in the Rocky Mountains and adjacent plains region: in Peterson, J.A., ed, Paleotectonics and Sedimentation in the Rocky Mountain Region, United States: American Association of Petroleum Geologists Memoir 41, pp. 41-56. A lineament is defined as a linear topographic feature of regional extent that is believed to reflect crustal structure (Hobbs et al., 1976, p. 267). Lineament features were transferred from the publication to a hard-copy base map by province geologist, then digitized and referenced for use in a Geographic Information System (GIS). Lineaments may: 1) enhance secondary reservoir permeability and 2) provide migration pathways in unconventional rocks.
DOI: 10.5066/p9n0mkuw
title: National Assessment of Oil and Gas Project - Powder River Basin Province (033) Structural Features

description: This dataset represents lineaments in the Powder River Basin as identified in the following publication: Anna, L.O., 1986, Geologic framework of the ground water system in Jurassic and Cretaceous rocks on the Northern Great Plains, in parts of Montana, North Dakota, South Dakota, and Wyoming: U.S. Geological Survey Professional Paper 1402-B, 36 p. Structural features were transferred from the publication to a hard-copy base map by province geologist, then digitized and referenced for use in a Geographic Information System (GIS). Structural may: 1) enhance secondary reservoir permeability and 2) provide migration pathways in unconventional rocks.
DOI: 10.5281/zenodo.4773828
title: Complement Decay-Accelerating Factor is a modulator of influenza A virus lung immunopathology

description: Data generated for the submitted manuscript Complement Decay-Accelerating Factor is a modulator of influenza A virus lung immunopathology (https://doi.org/10.1101/2021.02.16.431406)
DOI: 10.5281/zenodo.4773827
title: Complement Decay-Accelerating Factor is a modulator of influenza A virus lung immunopathology

description: Data generated for the submitted manuscript Complement Decay-Accelerating Factor is a modulator of influenza A virus lung immunopathology (https://doi.org/10.1101/2021.02.16.431406)
DOI: 10.5281/zenodo.4784289
title: DEMSI release v0.0.0 test case data

description: This data set contains data needed by the test cases included with the Discrete Element Model for Sea Ice (DEMSI) model v0.0.0.
DOI: 10.5281/zenodo.4784288
title: DEMSI release v0.0.0 test case data

description: This data set contains data needed by the test cases included with the Discrete Element Model for Sea Ice (DEMSI) model v0.0.0.
DOI: 10.6084/m9.figshare.14204798
title: Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish (Danio rerio) skeletal muscle.

description: These files are the supplemental data in support of the publication titled "Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish skeletal muscle."
DOI: 10.6084/m9.figshare.14204798.v1
title: Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish (Danio rerio) skeletal muscle.

description: These files are the supplemental data in support of the publication titled "Nitrate-induced improvements in exercise performance are coincident with exuberant changes in metabolic genes and the metabolome in zebrafish skeletal muscle."
DOI: 10.6084/m9.figshare.14204651
title: Supplemental Table S5

description: This data table shows the statistical output for a 2-way ANOVA using Metaboanalyst for both <sup>1</sup>H-NMR spectroscopy and LC-MS/MS data from the study.
DOI: 10.6084/m9.figshare.14204657
title: Supplemental Table S6

description: This data tables shows the multiple comparisons for each metabolite and includes the T statistic (t.stat), P value (p.value), FDR, fold change and log2(FC). All comparisons were done using MetaboAnalyst 5.0.
DOI: 10.6084/m9.figshare.14204648
title: Supplemental Table S4

description: This data table shows the relative abundance of each annotated metabolite analyzed using LC/MS-MS.
DOI: 10.6084/m9.figshare.14204654
title: Supplemental Table S3

description: This data table shows concentration of all identified metabolites using <sup>1</sup>H-NMR spectroscopy from zebrafish muscle.
DOI: 10.6084/m9.figshare.14204654.v1
title: Supplemental Table S3

description: This data table shows concentration of all identified metabolites using <sup>1</sup>H-NMR spectroscopy from zebrafish muscle.
DOI: 10.6084/m9.figshare.14204696
title: Supplemental Table S2

description: This table is shows all annotated features using LC-MS/MS- and <sup>1</sup>H-NMR- based metabolomics analysis.
DOI: 10.5281/zenodo.4763775
title: Biochar-poultry manure compost alters temperature and nitrogen dynamics during composting and improves crop growth following field application.

description: In a replicated composting trial, we evaluated two rates of biochar incorporation, at 20 and 40% concentration (volume/volume (v/v)), in a chicken manure and wood chip compost and compared it with an unamended control compost to better understand its impact on the composting process. To investigate the agronomic benefits of this strategy, the compost products were then utilized as a soil amendment in potato production. Data files 9 temperature log files. One recorder was used per bin and a total of 4 probes were installed in each bin. e.g., 10082260 bin1 20bioch rep2 24jun19.csv (files for bins 1-9) Weights of materials in composting bins: BIocharComp19 bin wts.xlsx Nutrient data for compost feedstocks, mixes, and final compost: BiochComp19 comp analy deposit.xlsx Bulk density and free air space for compost mixes and final compost: BiocharComp19 BulkDens FreeAirSpace.xlsx Potato harvest data from field trial: 2020_pot_leaf_wts_data_labels.xlsx Soil analysis from field trial. Bulk_Density_Pot_WTF20.xlsx Compost maturity test (seedling emergence): BiocharComp19 SeedlingEmergence.xlsx
DOI: 10.5281/zenodo.4763774
title: Biochar-poultry manure compost alters temperature and nitrogen dynamics during composting and improves crop growth following field application.

description: In a replicated composting trial, we evaluated two rates of biochar incorporation, at 20 and 40% concentration (volume/volume (v/v)), in a chicken manure and wood chip compost and compared it with an unamended control compost to better understand its impact on the composting process. To investigate the agronomic benefits of this strategy, the compost products were then utilized as a soil amendment in potato production. Data files 9 temperature log files. One recorder was used per bin and a total of 4 probes were installed in each bin. e.g., 10082260 bin1 20bioch rep2 24jun19.csv (files for bins 1-9) Weights of materials in composting bins: BIocharComp19 bin wts.xlsx Nutrient data for compost feedstocks, mixes, and final compost: BiochComp19 comp analy deposit.xlsx Bulk density and free air space for compost mixes and final compost: BiocharComp19 BulkDens FreeAirSpace.xlsx Potato harvest data from field trial: 2020_pot_leaf_wts_data_labels.xlsx Soil analysis from field trial. Bulk_Density_Pot_WTF20.xlsx Compost maturity test (seedling emergence): BiocharComp19 SeedlingEmergence.xlsx
DOI: 10.6084/m9.figshare.14669244
title: SRR3414635.bai

description: SRR3414635.bai
DOI: 10.6084/m9.figshare.14669244.v1
title: SRR3414635.bai

description: SRR3414635.bai
DOI: 10.25345/c51c0m
title: MassIVE MSV000087495 - Decoding location bias information of cAMP signaling in a class B GPCR
title: The parathyroid hormone (PTH) type 1 receptor (PTHR) is a class B G proteincoupled receptor (GPCR) that regulates mineral-ion, vitamin D, and bone homeostasis. Activation of the PTHR by PTH induces both transient cell surface and sustained endosomal cAMP production, but determination as to whether the spatial (location) or temporal (duration) dimension of cAMP signaling encodes for biological outcomes has remained elusive. Here we show that epimerization of a single amino acid in PTH (PTH7d) results in a biased ligand permitting the demonstration that similar elevations and durations of cAMP generated by the same receptor in separate cell locations plasma membrane vs endosomes mediate distinct physiological responses. PTH7d stabilizes a unique active PTHR conformation that triggers spatial bias of sustained cAMP signaling from the plasma membrane due to impaired barrestin (barr) coupling to the receptor. We further demonstrate the physiological importance of subcellular signaling location by the PTHR, as studies in cells and mice reveal that sustained cAMP produced by cell surface PTHR fails to mimic effects by sustained endosomal cAMP on the cellular production of the rate limiting hydroxylase catalyzing the formation of active Vitamin D, as well as serum elevation of active Vitamin D and Ca2+ in mice. These results unveil subcellular signaling location as a means to achieve specificity in PTHR mediated biological outcomes and raise the prospect of rational drug design based upon spatiotemporal manipulation of GPCR signaling.
DOI: 10.15468/pgz66u
title: Notes on Early Land Plants Today. 60. Circumscription of Gymnomitriaceae (Marchantiophyta)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Váňa, Jiří, Söderström, Lars, Hagborg, Anders, Konrat, Matt Von (2014): Notes on Early Land Plants Today. 60. Circumscription of Gymnomitriaceae (Marchantiophyta). Phytotaxa 183 (4): 287-289, DOI: 10.11646/phytotaxa.183.4.9, URL: http://dx.doi.org/10.11646/phytotaxa.183.4.9
DOI: 10.6084/m9.figshare.14089970
title: raw data

description: the raw data for the article