cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.z9bm06
title: Occurrence Download

description: A dataset containing 4109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Eucalyptus botryoides Sm.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4109 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007931-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk4gjz
title: Occurrence Download

description: A dataset containing 2044687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Kenya",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is KEN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is e2e717bf-551a-4917-bdc9-4fa0f342c530",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 2044687 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044391-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nekx7i
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neoscombrops atlanticus Mochizuki & Sano, 1984",
 "Country is Colombia"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007932-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfte4w
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ischaemum amboliense Bokil, Datar & R.K.Choudhary"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036554-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7a6h7t
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material citation, Material sample, Human Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vulpes ferrilata Hodgson, 1842"
 ]
}

 The dataset includes 45 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003555-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4prevt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Koeleria dersu Prob. & Prokop."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036579-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rj5of2
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Dolomedes tenebrosus Hentz, 1844"
 ]
}

 The dataset includes 139 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007932-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy2rpv
title: Occurrence Download

description: A dataset containing 1142 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pericrocotus miniatus (Temminck, 1822)"
 ]
}

 The dataset includes 1142 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051495-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ydzmp6
title: Occurrence Download

description: A dataset containing 17114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prenolepis imparis (Say, 1836)"
 ]
}

 The dataset includes 17114 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036641-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ifodcc
title: Occurrence Download

description: A dataset containing 7386 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bombus bohemicus Seidl, 1838",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7386 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007933-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6vtzhr
title: Occurrence Download

description: A dataset containing 11296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus lineatus (Linnaeus, 1758)"
 ]
}

 The dataset includes 11296 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044396-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fvmx5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microspio mecznikowiana (Claparède, 1869)",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007933-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmcrhk
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kayea eugeniifolia Pierre"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036616-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yfe2hk
title: Occurrence Download

description: A dataset containing 12519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Giraffa tippelskirchi Matschie, 1898, Hemitragus hylocrius (Ogilby, 1838), Hexaprotodon liberiensis (Morton, 1849), Lama glama (Linnaeus, 1758), Neotragus moschatus (Von Dueben, 1846), Ovis gmelini Blyth, 1841, Saiga borealis (Tschersky, 1876), Taurotragus oryx (Pallas, 1766))"
 ]
}

 The dataset includes 12519 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044392-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kb39jq
title: Occurrence Download

description: A dataset containing 3015 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rudbeckia amplexicaulis Vahl"
 ]
}

 The dataset includes 3015 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036618-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6ds0q
title: Occurrence Download

description: A dataset containing 1976 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Eucalyptus longifolia Link & Otto",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1976 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007934-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jqrvt
title: Occurrence Download

description: A dataset containing 12731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene nocturna L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12731 records from 228 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044404-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yn8ekm
title: Occurrence Download

description: A dataset containing 891 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chinchilla Bennett, 1829"
 ]
}

 The dataset includes 891 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036605-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9a39wj
title: Occurrence Download

description: A dataset containing 88000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (France, United Kingdom of Great Britain and Northern Ireland, Germany, Switzerland, Italy, Belgium, Spain)",
 "TaxonKey is Chalcolestes viridis (Vander Linden, 1825)"
 ]
}

 The dataset includes 88000 records from 1570 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036598-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hbfczvng3w
title: Transcriptomic analysis of the major orphan ichthyosis subtypes reveals shared immune and barrier signatures 

description: Background: Preliminary work suggested upregulation of inflammatory pathways in patients with common forms of ichthyosis. However, a comprehensive characterization of skin from various ichthyosis subtypes is unavailable, precluding development of targeted treatments.
Objective:  To characterize the immune and barrier profiles of common and subtype-specific skin transcriptomes in a large group of ichthyosis patients.
Methods: We performed the first global RNA-seq analysis in 54 ichthyosis patients (7 Netherton syndrome/NS, 13 epidermolytic ichthyosis/EI, 16 lamellar ichthyosis/LI, 18 congenital ichthyosiform erythroderma/CIE) and 40 healthy controls using RNA-seq. Differentially expressed genes (DEGs) were defined based on fold changes/FCH>2 and false discovery rate/FDR<0.05 criteria. 
Results: We found robust and significant Th22/Th17 skewing in all subtypes (e.g. IL-17A/C/F, S100A7/8/9/12; p<0.001) with modest changes in Th2 pathway, primarily in NS. Across all subtypes (less evident in EI), lipid metabolism and barrier junction markers were downregulated (e.g. FA2H, CDH10/11/12/2; p<0.05), whereas epidermal cornification and proliferation measures were upregulated (e.g. SPRR1A/1B/2C/2G, EREG; p<0.05).
Limitations: Although the largest ichthyosis cohort to date, sample size by subtype is still limited due to rarity.
Conclusion: Our findings suggest that the common ichthyosis variants share aberrations in Th17/Th22, and barrier function, with minimal Th2 modulation. This may help elucidate the pathogeneses of these subtypes and inform the development of subtype-specific treatments.
DOI: 10.15468/dl.84ndcr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer campestre subsp. leiocarpum P.Fourn., 1936"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011403-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8ytsb
title: Occurrence Download

description: A dataset containing 15365684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil"
 ]
}

 The dataset includes 15365684 records from 1815 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011372-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/657yy8
title: Ischnura elegans malikovae subspecies nova (Odonata, Coenagrionidae) from the Far East of Eurasia, with discussion of other possible subspecies

description: This dataset contains the digitized treatments in Plazi based on the original journal article Onishko, Vladimir V., Kosterin, Oleg E. (2022): Ischnura elegans malikovae subspecies nova (Odonata, Coenagrionidae) from the Far East of Eurasia, with discussion of other possible subspecies. Zootaxa 5120 (4): 573-585, DOI: 10.11646/zootaxa.5120.4.7AbstractIschnura elegans malikovae ssp. n. is described from the southern Far East of Russia (type locality: Russia, Primorskiy Kray, Pozharskiy District, Luchegorsk Town, the Luchegorsk Reservoir). Reconsideration of literature suggested it to broadly range in East Asia including Korea, Japan (Hokkaido and northernmost Honshu), north and north-east China and to be hitherto mistaken for Ischnura elegans elegans (Vander Linden, 1820) in Japan. The main difference of the new subspecies from I. e. elegans is the male paraprocts that are about 1.5 times shorter and scarcely divaricating in dorsal view and directed obliquely upward in lateral view. Ischnura elegans ebneri Schmidt, 1938 is reconsidered as the presumably Anterior Asian subspecies characterised by scarcely or not diverging male paraprocts in dorsal view, versus strongly diverging in I. e. elegans. Based on scarce information in the literature, I. elegans marquardti Schmidt, 1938 is supposed to be a junior synonym of I. elegans ordosi Bartenev, 1912 stat. rev., which is suggested to be an eastern Central Asian subspecies characterised by an incised prothoracic process in males.
DOI: 10.6084/m9.figshare.29459012
title: The rate of amino acid divergence in Arabidopsis lyrata Plech population.

description: We retrieved the <i>Arabidopsis thaliana</i> TAIR10 coding sequences (CDS) FASTA from the Joint Genome Institute (JGI) portal. For <i>Arabidopsis lyrata</i> NT1, we downloaded the reference genome FASTA and corresponding GTF annotation (Kolesnikova et al., 2013). We used a custom Python/GFFutils pipeline to extract and concatenate CDS exon features for each transcript directly from the GFF3 and genome FASTA, writing one CDS FASTA per transcript. We aligned each filtered CDS pair in codon space via a two-step MAFFT + PAL2NAL pipeline. First, protein translations were aligned with MAFFT v7.480 (–auto). Second, PAL2NAL v14 was used to back-translate to a two-sequence codon alignment in FASTA. Alignments were then filtered to retain only those with 100% coverage (no gaps in either sequence). Pairwise nonsynonymous (Ka) and synonymous (Ks) substitution rates were calculated on the codon alignments using KaKs_Calculator v2.0 with the Yang–Nielsen (YN00) method. We excluded any pairs for which Ka or Ks could not be estimated (e.g. no observed synonymous changes or saturated Ks) and any alignments yielding Ks &lt; 0.01 or alignment length &lt; 150 bp. This final QC step produced Ka/Ks estimates for 6419 ortholog pairs. Of these, 3453 showed Ka/Ks significantly ≠ 1 (P &lt; 0.05, YN00 test). To quantify uncertainty in group‐level Ka/Ks means, we organized the 6419 genes into functional or expression‐based groups. For each group, we performed 1000 bootstrap replicates with replacement: in each replicate, we sampled N genes (where N is the group size), recalculated the mean Ka and mean Ks, and computed the mean Ka/Ks ratio.<br>
DOI: 10.6084/m9.figshare.29459012.v1
title: The rate of amino acid divergence in Arabidopsis lyrata Plech population.

description: We retrieved the <i>Arabidopsis thaliana</i> TAIR10 coding sequences (CDS) FASTA from the Joint Genome Institute (JGI) portal. For <i>Arabidopsis lyrata</i> NT1, we downloaded the reference genome FASTA and corresponding GTF annotation (Kolesnikova et al., 2013). We used a custom Python/GFFutils pipeline to extract and concatenate CDS exon features for each transcript directly from the GFF3 and genome FASTA, writing one CDS FASTA per transcript. We aligned each filtered CDS pair in codon space via a two-step MAFFT + PAL2NAL pipeline. First, protein translations were aligned with MAFFT v7.480 (–auto). Second, PAL2NAL v14 was used to back-translate to a two-sequence codon alignment in FASTA. Alignments were then filtered to retain only those with 100% coverage (no gaps in either sequence). Pairwise nonsynonymous (Ka) and synonymous (Ks) substitution rates were calculated on the codon alignments using KaKs_Calculator v2.0 with the Yang–Nielsen (YN00) method. We excluded any pairs for which Ka or Ks could not be estimated (e.g. no observed synonymous changes or saturated Ks) and any alignments yielding Ks &lt; 0.01 or alignment length &lt; 150 bp. This final QC step produced Ka/Ks estimates for 6419 ortholog pairs. Of these, 3453 showed Ka/Ks significantly ≠ 1 (P &lt; 0.05, YN00 test). To quantify uncertainty in group‐level Ka/Ks means, we organized the 6419 genes into functional or expression‐based groups. For each group, we performed 1000 bootstrap replicates with replacement: in each replicate, we sampled N genes (where N is the group size), recalculated the mean Ka and mean Ks, and computed the mean Ka/Ks ratio.<br>
DOI: 10.15468/u7emb3
title: Gymnomitrion schusteranum (Gymnomitriaceae), a new species from the Sino-Himalaya

description: This dataset contains the digitized treatments in Plazi based on the original journal article Konstantinova, N. A., Long, D. G., Mamontov, Y. S., Vilnet, A. A. (2021): Gymnomitrion schusteranum (Gymnomitriaceae), a new species from the Sino-Himalaya. Arctoa 30 (2): 149-158, DOI: 10.15298/arctoa.30.16, URL: https://doi.org/10.15298/arctoa.30.16AbstractA new species of Gymnomitrion, G. schusteranum is described based on specimens from the Sino-Himalaya (South-west China and North India). It differs well from other species of the genus by the presence of a pronounced vitta not known in any other Gymnomitrion spp., as well as its distinctly elongate leaves with unequal lobes, very deep sinus, and revolute margins of sinus and margins of leaves. So far, the species has been found in China in an area with a concentration of other endemic and subendemic Sino-Himalayan liverworts and in West Bengal (India) located ca. 1000 km apart.РезюмеПриводится описание нового вида из рода Gymnomitrion – G. schusteranum, по образцам из Сино-Гималайского региона (Юго-Западный Китай и Северная Индия). Характерными признаками G. schusteranum являются выраженная 2–4-слойная жилка, не известная у других видов этого рода, а также отчетливо удлиненные листья с неравными лопастями, очень глубокая вырезка, отвернутые края листьев и вырезки. В настоящее время G. schusteranum известен из двух местонахождений, которые располагаются в Китае и Индии и отстоят друг от друга на расстоянии около 1000 км. В данных местонахождениях вид найден вместе с несколькими другими эндемичными и субэндемичными для Гималаев печеночниками.KEYWORDS: Hepaticae, Gymnomitrion, new species, morphology, ITS1-2 nrDNA, trn L-F cpDNA, Himalaya, Yunnan, West Bengal
DOI: 10.15468/j8hv9b
title: January 26, 1836

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vigors, N. A. (1836): January 26, 1836. Proceedings of the Zoological Society of London 1836: 5-8, DOI: 10.5281/zenodo.7457546, URL: https://ia600507.us.archive.org/35/items/proceedingsofgen36zool/proceedingsofgen36zool.pdf
DOI: 10.15468/7w3qks
title: Corythucha arcuata (Say, 1832) (Hemiptera, Tingidae) an invasive pest, with a review of the recent invasion of alien species to Kosovo

description: This dataset contains the digitized treatments in Plazi based on the original journal article Geci, Donard, Ibrahimi, Halil, Bilalli, Astrit, Musliu, Milaim (2024): Corythucha arcuata (Say, 1832) (Hemiptera, Tingidae) an invasive pest, with a review of the recent invasion of alien species to Kosovo. Journal of Insect Biodiversity and Systematics 10 (1): 73-79, DOI: 10.61186/jibs.10.1.73, URL: https://doi.org/10.61186/jibs.10.1.73ABSTRACT. This study reports the discovery of Corythucha arcuata (Say), a species previously unrecorded in the Republic of Kosovo. Nine individuals of this species were collected from an Oak tree during the investigation. The findings presented in this study enhance our knowledge of the distribution of C. arcuata within the Balkan region. This discovery underscores the importance of further research to elucidate the factors governing the presence or absence of this species in specific areas. Also, herein we made a list of all known alien-invasive species to Kosovo.
DOI: 10.15468/9zezcj
title: A new species of the Scinax cruentomma group (Anura: Hylidae) from the Ucayali River basin of Loreto, Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gagliardi-Urrutia, Giussepe, Araujo-Vieira, Katyuscia, Padial, José M., Simões, Pedro Ivo, Faivovich, Julián, Castroviejo-Fisher, Santiago (2024): A new species of the Scinax cruentomma group (Anura: Hylidae) from the Ucayali River basin of Loreto, Peru. Zootaxa 5406 (3): 401-420, DOI: 10.11646/zootaxa.5406.3.1, URL: http://dx.doi.org/10.11646/zootaxa.5406.3.1AbstractWe describe a new species of the Scinax cruentomma species group, with a red streak in the iris and a weakly bilobate vocal sac. It is known from oligotrophic soils in the sedimentary basin of the Ucayali River near Jenaro Herrera (province of Requena, Peru) and Río Blanco (buffer zone of the Matses Indigenous territory and reserve). The new species can be distinguished from the other species of the S. cruentomma group by its small snout-vent length, body and iris color patterns, weakly bilobate vocal sac, myological characters, and the number of notes and pulses of the advertisement call. It is morphologically most similar to S. strussmannae, from which the advertisement call, nostril, canthus rostralis, and loreal region can distinguish it.