cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/sgfyhyrmjb
title: Software tools for thermodynamic calculation of mechanically unstable phases from first-principles data

description: This paper introduces the P^4 software package, a set of software tools that automate the process of vibrational free energy calculation for mechanically unstable phases. The Piecewise Polynomial Potential Partitioning (P^4) method is a recently developed method that tackles the issue of phonon instabilities in solid solutions and compounds. The method efficiently explores the system’s ab-initio energy surface by discrete sampling of local minima, which is combined with a continuous sampling of the vicinity of these local minima via a constrained harmonic lattice dynamic approach. The free energy values obtained by this toolkit can be used in thermodynamic assessments and phase diagram calculations. As a unique advantage, it provides the tool to calculate the vibrational free energy in a wide composition range in alloys. This feature is not practically achievable by relying only on brute-force molecular dynamics or random sampling techniques.
DOI: 10.21233/w71t-q079
title: Lieutenant Lake pollen surface sample dataset

description: Raw data for the Lieutenant Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/t8g34sy3zw
title: college students 1390

description: This dataset was collected in 2015 from an online survey targeting university students in ShenZhen.
DOI: 10.17632/knnhry4xb7
title: Benchmark Control Problem in Real-time Hybrid Simulation

description: Computational package companion to the benchmark control problem in real-time hybrid simulation manuscript
DOI: 10.6084/m9.figshare.27933915.v1
title: wheat-test

description: grainspace-wheat-test
DOI: 10.6084/m9.figshare.15051069.v2
title: Data20210726

description: Data for Zhuoyi Zhu's paper
DOI: 10.17632/3bz5kdwnkw
title: DMU efficiency scores and attributes

description: Dataset DMU efficiency scores and attributes for the training process.
DOI: 10.17632/sfv46y3wmm
title: Niiya, Handron, & Markus (2021) 

description: Abstract: Japanese rank among the least likely to intervene to help a stranger in a non-emergency situation while Americans rank among the most likely. Across four studies, we demonstrate that Japanese are less likely to offer help to strangers because their decisions rely more heavily on the assessment of the needs of others. Accordingly, when there is uncertainty about the need for help, Japanese are less likely to intervene than Americans because without an understanding of the needs of recipient, the impact of intervention may also be harmful. When the situation is unambiguous, Japanese and Americans are equally likely to help. This divergence in readiness to help strangers elaborates the understanding of why people in Japanese contexts are more likely than those in U.S. contexts to attend to the situation and to avoid uncertain situations. It also illuminates cultural differences in models of agency—implicit understandings of when and why a person should act to aid another.
DOI: 10.21233/v7h2-hf21
title: Sawtooth Lake pollen surface sample dataset

description: Raw data for the Sawtooth Lake pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/ysd2jdkgj4
title: Supplemental Table I. CLE subjects classified with SLE by only one classification criteria

description: Differential effect of the 2019 EULAR/ACR classification criteria for systemic lupus on different cutaneous lupus subtypes
Supplemental Table I. CLE subjects classified with SLE by only one classification criteria
DOI: 10.17632/bvg76r6mwz
title: Data for: Quality of life analysis in lung cancer: a systematic review of phase III trials published between 2012 and 2018

description: The Excel file includes the data used for analysis
DOI: 10.17632/fxj33nd36c
title: Dataset for validation of a Monte Carlo framework

description: Dataset usable to calibrate and validate a Monte Carlo framework for dosimetric applications in general projection radiology. The dataset includes:
- the spectra
- the measured radiation dose of the calibration and validation experiment
- the material compositions used in the Monte Carlo framework
DOI: 10.17632/vvvhskpj36
title: Impact of Wine Influencers' Characteristics on Consumer Behavior

description: This curated data is part of study on Wine influencer's chareactersitcs on consumer behaviour. Using the Elaboration Likelihood Model, this study examines the impact of wine influencers' characteristics on consumers' attitudes, purchase intentions, and actual buying behavior. A survey of 404 social media users was conducted using a structured questionnaire. The structural modeling analysis found that perceived credibility impacts attitudes toward influencers but not recommended brands. However, we have included only 100 rows of data of important study constructs.
DOI: 10.6084/m9.figshare.26316985.v1
title: Blood marker data.XLSX

description: This study is mainly to explore the changes of early blood markers of cognitive impairment, and provide help for early screening of early Alzheimer's disease
DOI: 10.17632/jcvsm27smf
title: Capsule hotel Data

description: Service experience in capsule hotels from Tripadvisor
DOI: 10.6084/m9.figshare.11109290.v1
title: 20191125.xlsx

description: 的 <sup>ΔΔ</sup> Ç <sub>吨</sub> 被使用的方法来计算与β肌动蛋白作为参照基因的相对表达，并归一化至对照。S-短等级，M-中等级，L-长等级
DOI: 10.17632/4xpff636jc
title: Spontaneous Regression of Cancer : Melanoma

description: The spontaneous cancer regression process, a well-documented paradoxical natural phenomenon, shows that malignant tumors can episodically undergo complete permanent elimination without treatment, and thus may be used for incisive therapeutic design innovations. This approach has high novelty as spontaneous regression process displays no toxicity or recurrence, as compared to customary therapy, and thus duplicating such regression process is highly desirable. Our aim was to probe this phenomenon using computational biomolecular dynamics analysis, with application to malignant melanoma as illustrative case-study, and thereby identify candidate molecules that may mimic the spontaneous regression process on the tumor. We investigated microarray preparations of melanoma, finding two reciprocal phases: spontaneous progression and spontaneous regression, and showed 17 driver genes for spontaneous regression of melanoma. We probed gene ontology, differentially-expressed genes and network pharmacoinformatics analysis. Thereby we targeted two main melanoma signaling pathways (MAPK, PI3K-AKT) which we blocked in the bioinformatics platform by inhibiting two melanoma oncogenes (BRAF, NRAS), thus arresting the melanoma progression phase, and activating the reverse phase, melanoma regression. Through molecular docking, we investigated the interactions between oncogenes vis-à-vis candidate molecules, identifying alpelisib and cetuximab as promising repurposable pharmacological candidates capable of efficiently inhibiting both oncogenes. Molecular dynamics simulations elucidated the stability and structural dynamics of protein-ligand complexes over requisite time-scale. Notably, alpelisib demonstrated stable binding with both BRAF and NRAS, maintaining proper protein folding, and cetuximab exhibited continuous stable hydrogen-bonding with both targets, as we found from protein-ligand modelling. Furthermore, binding energy calculations highlighted electrostatic and van der Waals interactions in stabilizing protein-ligand complexes. Specifically, alpelisib exhibited strong van der Waals and electrostatic interactions with NRAS, indicating significant therapeutic potency. Our findings underscore the high impact possibility for leveraging the anomalous phenomenon of spontaneous cancer regression and developing targeted therapeutic interventions, with substantial clinical oncological potentials.
DOI: 10.17632/fpvmmm33gd
title: RNA-seq data for F1-F6-RiboTAC in MDA-MB-231 cells

description: This is a supplementary dataset to a manuscript we are publishing. This dataset includes the RNA-seq results quantifying the change in transcript abundances after treating with small molecule RNA degraders in MDA-MB-231 cells. Please refer to our manuscript once published for the complete details.
DOI: 10.17632/n82f6dskdh
title: YX175 dataset

description: YX175 230Th ages and oxygen isotope data for Coupling of the Asian monsoon and Antarctic climates on multiple timescales and implications for drivers of ice-volume terminations
DOI: 10.6084/m9.figshare.26131537.v1
title: Molecular phylogeny, morphology, mycorrhizal symbiosis, and putative distribution of the arbuscular mycorrhizal fungus <i>Epigeocarpum japonicum</i> (<i>Glomeraceae</i>)

description: Alignments of 18S-ITS-28S, rpb1, and 18S-ITS-28S+rpb1 sequences of <i>Epigeocarpum</i> species (Glomeraceae) performed using MAFFT 7 with E-INS-i option. These alignments are used for Bayesian inference and maximum likelihood phylogenetic analyses in Yamato et al. (2024).
DOI: 10.6084/m9.figshare.3503183.v1
title: Dataset lamdaDNA.xlsx

description: We treated lamda DNA by non thermal atmospheric pressure plasma jet for varying duration altering the treatment medium.
DOI: 10.17632/kcsh9g4d43
title: Data for: Facile synthesis of Mo-doped TiO2 for selective photocatalytic CO2 reduction to methane: Promoted H2O dissociation by Mo doping

description: Data for Mo-doped photocatalyst characterization and activity tests for CO2 reduction.
DOI: 10.17632/yj4pc9p5f8
title: Non-adiabatic transformation of quantum-chemistry energy hypersurfaces

description: Title of program: DIAB Catalogue Id: ABXA_v1_0 Nature of problem Determination of non-adiabatic potential surfaces from interaction configuration wavefunctions. Versions of this program held in the CPC repository in Mendeley Data ABXA_v1_0; DIAB; 10.1016/0010-4655(83)90058-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.19499375.v1
title: patches and local annotations, slide 041, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.25403/upresearchdata.20424345.v1
title: Determining the quality of ambient air

description: This is sampling data used by gravimetric methods to sample ambient PM2.5 at the School of Health Systems and Public Health. The mean average PM2.5 (23 µg/m3) and eleven PM2.5 bound trace elements were analysed for 34 months. Air pollutants were analysed by receptor source apportionment methods and HYSPLIT models. Sources included resuspended matrix, mining, exhaust, industry, biomass burning and vehicular emissions. Health studies included a health risk assessment for PM2.5 and eight trace elements and a case-crossover epidemiology study between respiratory hospital admissions and PM2.5, nine trace elements and sources of PM2.5. It was concluded that the population is at risk due to exposure to air pollutants in Pretoria and air quality policies should endeavour to be in line with the World Health Organization (WHO) guidelines.
DOI: 10.6084/m9.figshare.14784630.v1
title: Supplementary Material for: Long Noncoding RNA GAS5 Targeting miR-221-3p/Cyclin-Dependent Kinase Inhibitor 2B Axis Regulates Follicular Thyroid Carcinoma Cell Cycle and Proliferation

description: <b><i>Introduction:</i></b> Follicular thyroid carcinoma (FTC) is more aggressive than the most common papillary thyroid carcinoma (PTC). However, the current research on FTC is less than PTC. Here, we investigated the effects of long noncoding RNA (lncRNA) GAS5 and miR-221-3p in FTC. <b><i>Methods:</i></b> Quantitative real-time polymerase chain reaction (qRT-PCR) was employed to detect GAS5 and miR-221-3p expression in the FTC tissues and cells. Cell proliferation was assessed by CCK8 and EdU assays. Flow cytometry was performed to determine the cell cycle. The dual-luciferase reporter assay was employed to validate the binding relationship of GAS5/miR-221-3p and miR-221-3p/cyclin-dependent kinase inhibitor 2B (CDKN2B). Western blot was conducted to measure the protein level of CDKN2B. <b><i>Results:</i></b> Our results displayed that GAS5 was downregulated, while miR-221-3p was upregulated in FTC tissues and cells. What’s more, overexpression of GAS5 or miR-221-3p inhibition induced G0/G1 phase arrest and inhibited cell proliferation of FTC cells. GAS5 acted as a sponge of miR-221-3p, and CDKN2B was a target gene of miR-221-3p. Additionally, GAS5 inhibited cell cycle and proliferation of FTC cells via reducing miR-221-3p expression to enhance CDKN2B expression. <b><i>Conclusion:</i></b> GAS5 induced G0/G1 phase arrest and inhibited cell proliferation via targeting miR-221-3p/CDKN2B axis in FTC. Thus, GAS5 may be a potential therapeutic target for the treatment of FTC.
DOI: 10.17632/zpwkwwg5xz
title: Kellermann et al 2022_Preparation for denitrification at the cusp of anoxia

description: Supporting information to Kellermann et al, submitted to AEM June 2022; five separate files named supplemental item 1-5. 

Title of paper:
Preparation for denitrification and phenotypic diversification at the cusp of anoxia; a purpose for N2O reductase vis a vis multiple roles of O2 

Supplemental item 1 is a description and qualification of the glucose oxidase-catalase (GOX) approach used for the removal of residual oxygen in experimental vials before inoculation.  In supplemental item 2, we display the gas- and flow cytometry data  in the O2 spiking experiment, including the data shown in Figure 2 and 3 in the paper. In supplemental item 3, we show the gas kinetics and microscopy analyses from the N2O spiking experiment, which in the paper is summarized in Fig 4. We also show the lack of positive effect from N2O addition on Nir expression in a NosZ deficient mutant. In supplemental item 4, we describe the steps taken to estimate apparent specific growth rates in single vials and cell yield per mol electron to N-oxides. In supplemental item 5, we describe a simple experiment where nitrite reducing cultures of Paracoccus denitrificans was spiked with N2O and O2 and the subsequent rate of nitrite reduction was assessed.

Movies 1-6:
Red (mCherry-NirS expression) and green (FITC, growth) fluorescence in single cells captured by flow cytometry (Movie 1-4; O2-spiking experiment) or fluorescence microscopy and image analyses (Movie 5-6; N2O spiking experiment). Movie 1: vial 1.2; Movie 2: vial 1.3; Movie 3: vial 1.8; Movie 4: vial 1.9; Movie 5: vial 2.3 and 2.4; Movie 6: vial 2.7 and 2.11.
DOI: 10.17632/9fyc3mk76x
title: GBM patient-derived neurosphere models

description: Raw data for "Functional drug susceptibility testing using single-cell mass predicts treatment outcome in patient-derived cancer neurosphere models" (Stockslager et al., Cell Reports, 2021).
DOI: 10.17632/v3spwzz92g
title: Fluid threshold of windblown sand and dust on Mars considering electric field and insolation

description: This dataset supports the article "Fluid threshold of windblown sand and dust on Mars considering electric field and insolation". The data are provided in MatLab format.
DOI: 10.15468/dl.egaa5z
title: Occurrence Download

description: A dataset containing 1962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Calliphora vomitoria (Linnaeus, 1758)"
 ]
}

 The dataset includes 1962 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009123-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/p858yck56r
title: Data for: Barely visible impact damage detection and location on aerospace-grade composite materials with in-flight compatible fibre Bragg grating sensors

description: This dataset contains the spectral data acquired before and after every BVID application and the summarized processed data from which the graphs and tables in the article were generated.
DOI: 10.17632/ybw6zvsydz
title: Data for: Simultaneous Analysis of Two Urinary Biomarkers of Oxidative Damage to DNA and RNA Based on Packed-Fiber Solid Phase Extraction Coupled with High-performance Liquid Chromatography
DOI: 10.17632/pw87p286yx
title: Cardiac super-resolution label maps

description: NIfTI files in end diastole (ED) and end systole (ES) at low resolution (LR) and high resolution (HR) in 1,331 subjects. Ground truth labels for the left ventricular blood pool, left ventricular myocardium, and right ventricular blood pool at LR and HR were produced as previously described (https://doi.org/10.1016/j.media.2015.08.009).
DOI: 10.17632/6mw5gdwfkt
title: POLALMM: A program to compute polarizabilities for nominal one-electron systems using the Lagrange-mesh method

description: We present a program to compute polarizabilities of nominal one-electron systems using the Lagrange-mesh method (LMM) (Baye, 2015), that was used by Filippin et al., (2018). A semiempirical-core-potential approach is implemented, ultimately solving a Dirac-like equation by diagonalizing the corresponding Hamiltonian matrix. In order to build the core potential, the core orbitals are obtained from independent calculations using the Grasp2018 package (Fischer et al., 2019). Therefore we provide an easy-to-use interface between the Grasp2018 package and the LMM complete finite basis, allowing to switch easily from one one-electron basis to the other.
DOI: 10.6084/m9.figshare.3406654.v3
title: Phylogenetic analyses show that the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata).

description: Supplemental Figures from Pyataeva et al. 2016. DNA barcodes unite two problematic taxa: the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata). Zootaxa.<b>Figure S1.</b> Neighbor joining topology for 16S sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=4), along with all (n=1948) publicly available 16S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 6 of 27 and highlighted in yellow. The topology shows these taxa diverging near the base of a clade containing all sampled members of Aplanulata. <b>Figure S2.</b> Neighbor joining topology for COI sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=5), along with all (n=1614) publicly available COI sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> samples are found on page 3 of 32, and highlighted in yellow, branching among exemplars of Aplanulata, which do not form a clade in the NJ topology. <i>Plotocnide/Boreohyra</i> samples are highlighted in yellow and found united with COI sequences derived from another putative member of Aplanulata, <i>Margelopsis</i> on page 26 of 32. <b>Figure S3.</b> Maximum likelihood topology for 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 10 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata. <b>Figure S4.</b> Consensus of 420 bootstrap maximum likelihood analyses of 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on pages 8 and 9 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata.
DOI: 10.17632/27vk8d9nny
title: OHCD_GIETV3

description: Creation of Handwritten Odia Character about 8381 image data from different Indian language news paper like Hindi, Bengali, Telegu, Kannada, Tamil, Malayalam, Odia and English etc., By using Annotation, Threshold, Augmented and produce image of equal size data.
DOI: 10.17632/h325b4jzgv
title: Data for: Mineralogical and isotopic characterization of graphite deposits in the western part of the North Qaidam Orogen and East Kunlun Orogen, northeast Tibetan Plateau, China

description: Data for X-ray diffraction, Carbon-oxygen isotopes of graphite and calcite
DOI: 10.17632/nn9ryfpy7h
title: Uncropped western blots UBE2J1 RNF26 2020

description: Uncropped Western blots to accompany manuscript ''ER-embedded UBE2J1/RNF26 ubiquitylation complex in spatiotemporal control of the endolysosomal pathway’ (CELL-REPORTS-D-19-04413''
DOI: 10.17632/cmp9p77nwc
title: Reliability Generalization of the Oxford COVID-19 Vaccine Hesitancy Scale: Dataset and R-Script

description: The Oxford COVID-19 Vaccine Hesitancy Scale is a 7-item psychological scale developed by Freeman and colleagues a year after detecting the first case of the disease in 2019. The scale across several research contexts assesses how people think, feel, and behave toward COVID-19 vaccines. These are dataset and R script for a study on "Reliability Generalization of the Oxford COVID-19 Vaccine Hesitancy Scale."
DOI: 10.17632/styzzkvt9r
title: Sovereign vs. Corporate Debt and Default: More Similar Than You Think - Replication files

description: Data and replication files for Gopinath, Meyer, Reinhart, and Trebesch (2025) "Sovereign vs. Corporate Debt and Default: More Similar Than You Think", forthcoming in the Journal of International Economics.
DOI: 10.17632/nnm8vyr6ff
title: he data used in this article are available from the authors through a formal request

description: Purpose: To find out if Russian and Aussie currents contribute to the effects of isokinetic training in patients with patellofemoral pain syndrome, and to compare their effectiveness on symptoms, pain, functional mobility, and quality of life.
Design: Fifty-nine patients with patellofemoral pain syndrome were randomized into four groups. One group received only isokinetic training, while others received Russian and Aussie current or placebo electrical stimulation additionally, during five-days a week, for three weeks. The outcome measures were the Patellofemoral Pain Severity Scale, Stair Climbing Test, Anterior Knee Pain Scale, Knee Outcome Survey Activities of Daily Living Scale, and Short Form-36, which were evaluated before and after the treatment programs and at the end of a three-week control period. 
Results: The severity of symptoms and pain decreased, and the functional mobility, activity limitations and quality of life improved significantly after interventions (p<0.05). These effects were maintained at the control period (p<0.05). The amount of change in Patellofemoral Pain Severity Scale and quality of life scores was higher in the Russian and Aussie current groups (p<0.05). 
Conclusion: IT is effective in improving the symptoms, pain, functionality and quality of life in patients with patellofemoral pain syndrome, and burst-modulated medium-frequency alternating currents can provide extra benefits especially on the symptoms, pain and quality of life.