cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29598794.v2
title: Exploring The Structural Basis and Functional Immunodynamics of Immunoglobulin M (IgM) in Host Defense Against Fungal Pathogens

description: The rising prevalence of life-threatening fungal infections, particularly in immunocompromised individuals, necessitates a deeper understanding of all facets of the host immune response. While much focus has been placed on cellular immunity, the contribution of Immunoglobulin M (IgM), the first antibody produced during an immune response, remains a relatively underexplored area in the context of systemic mycoses. This comprehensive survey explores the role of IgM in antifungal immunity, with a focus on life-threatening fungal infections. As the earliest antibody isotype, IgM achieves remarkable binding diversity through germline-encoded V(D)J recombination without requiring somatic hypermutation. Its multimeric structure enables high-avidity recognition of fungal cell wall components, facilitating binding despite antigenic variability of opportunistic pathogens. While conserved fungal polysaccharides activate host pattern recognition receptors, pathogenic fungi have evolved exopolysaccharides that shield immunogenic motifs from detection. IgM recognizes these complex carbohydrate epitopes and triggers complement activation, enhancing opsonophagocytic clearance. Evolutionarily conserved across vertebrates, IgM provides critical broad-spectrum protection through germline-encoded diversity. Despite these advantages, IgM therapeutic potential in systemic mycoses remains underexplored, particularly in immunocompromised status. This review presents evidence on the molecular basis and immunological functions of IgM, highlighting its contributions to immunity against pathogenic fungi and identifying promising avenues for translational research across various clinically relevant fungal species.
DOI: 10.6084/m9.figshare.29598794.v1
title: Exploring The Structural Basis and Functional Immunodynamics of Immunoglobulin M (IgM) in Host Defense Against Fungal Pathogens

description: The rising prevalence of life-threatening fungal infections, particularly in immunocompromised individuals, necessitates a deeper understanding of all facets of the host immune response. While much focus has been placed on cellular immunity, the contribution of Immunoglobulin M (IgM), the first antibody produced during an immune response, remains a relatively underexplored area in the context of systemic mycoses. This comprehensive survey explores the role of IgM in antifungal immunity, with a focus on life-threatening fungal infections. As the earliest antibody isotype, IgM achieves remarkable binding diversity through germline-encoded V(D)J recombination without requiring somatic hypermutation. Its multimeric structure enables high-avidity recognition of fungal cell wall components, facilitating binding despite antigenic variability of opportunistic pathogens. While conserved fungal polysaccharides activate host pattern recognition receptors, pathogenic fungi have evolved exopolysaccharides that shield immunogenic motifs from detection. IgM recognizes these complex carbohydrate epitopes and triggers complement activation, enhancing opsonophagocytic clearance. Evolutionarily conserved across vertebrates, IgM provides critical broad-spectrum protection through germline-encoded diversity. Despite these advantages, IgM therapeutic potential in systemic mycoses remains underexplored, particularly in immunocompromised status. This review presents evidence on the molecular basis and immunological functions of IgM, highlighting its contributions to immunity against pathogenic fungi and identifying promising avenues for translational research across various clinically relevant fungal species.
DOI: 10.34740/kaggle/dsv/12582297
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.z2netn
title: Occurrence Download

description: A dataset containing 1597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Malacosteus niger"
 ]
}

 The dataset includes 1597 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049945-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbtxu7
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Belarus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049946-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prtwth
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049947-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9r8gg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cottus cyclophthalmus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049948-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzzj56
title: Occurrence Download

description: A dataset containing 344816 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Mammal Atlas Project, online recording"
 ]
}

 The dataset includes 344816 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049938-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghh7tb
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maulisia microlepis"
 ]
}

 The dataset includes 215 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049951-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hpswc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trigonella glabra",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049950-250717081556266/datasets/export for details.
DOI: 10.15468/dl.yjjz59
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Moldova, Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049954-250717081556266/datasets/export for details.
DOI: 10.15468/dl.nvgxec
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Enteromius annectens)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 111 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049952-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bdvp4
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049953-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcebkg
title: Occurrence Download

description: A dataset containing 2092402 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Record species dataset covering Cheshire, Halton, Warrington & Wirral"
 ]
}

 The dataset includes 2092402 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049918-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7mkbp
title: Occurrence Download

description: A dataset containing 4760 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maurolicus muelleri"
 ]
}

 The dataset includes 4760 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049955-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djkcfq
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049956-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkdvte
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trigonella glabra",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049958-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epsbfr
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trigonella glabra",
 "Country is Qatar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049957-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sx5gnz
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Doryichthys boaja)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 56 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049959-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2wvx4
title: Occurrence Download

description: A dataset containing 595011 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is National Trust Species Records"
 ]
}

 The dataset includes 595011 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049944-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m69uww
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trigonella glabra",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049960-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsna5t
title: Occurrence Download

description: A dataset containing 845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 845 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049965-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88n8zy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pseudobunocephalus quadriradiatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049963-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzykvs
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049964-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eur646
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia faba",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049966-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16442997
title: Supplementary datasets for the study "Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond".

description: Supplementary datasets that are necessary to reproduce the analyses pertaining to the manuscript "Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond". 

See https://github.com/BIMSBbioinfo/flexynesis_manuscript for further details. 

Manuscript Author List: Bora Uyar1,†, Taras Savchyn1, Amirhossein Naghsh Nilchi2,3, Ahmet Sarigun1, Ricardo Wurmus1, Mohammed Maqsood Shaik1, Björn Grüning2, Vedran Franke1, Altuna Akalin1,†

Affiliations:1Bioinformatics and Omics Data Science Platform, Max Delbruck Center for Molecular Medicine, The Berlin Institute for Molecular Systems Biology, Hannoversche Str. 28, 10115, Berlin, Germany2Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, 79110 Freiburg, Germany3Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Germany.†Co-corresponding authors: Bora Uyar (bora.uyar@mdc-berlin.de), Altuna Akalin (Altuna.Akalin@mdc-berlin.de)
DOI: 10.5281/zenodo.16442998
title: Supplementary datasets for the study "Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond".

description: Supplementary datasets that are necessary to reproduce the analyses pertaining to the manuscript "Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond". 

See https://github.com/BIMSBbioinfo/flexynesis_manuscript for further details. 

Manuscript Author List: Bora Uyar1,†, Taras Savchyn1, Amirhossein Naghsh Nilchi2,3, Ahmet Sarigun1, Ricardo Wurmus1, Mohammed Maqsood Shaik1, Björn Grüning2, Vedran Franke1, Altuna Akalin1,†

Affiliations:1Bioinformatics and Omics Data Science Platform, Max Delbruck Center for Molecular Medicine, The Berlin Institute for Molecular Systems Biology, Hannoversche Str. 28, 10115, Berlin, Germany2Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, 79110 Freiburg, Germany3Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Germany.†Co-corresponding authors: Bora Uyar (bora.uyar@mdc-berlin.de), Altuna Akalin (Altuna.Akalin@mdc-berlin.de)
DOI: 10.5281/zenodo.16443534
title: Dataset for: "High-Resolution Magnetic Susceptibility Dataset from Bore-hole Samples from the "Rudnik" Mine Tailings, Republic of Serbia"

description: In 2024, high-resolution (10 cm resolution) magnetic susceptibility (MS) data acquisition and subsequent sample preparation and laboratory measurements were conducted at the "Rudnik" mine tailing site in the Republic of Serbia. The dataset consists of 1022 measurements obtained from 7 boreholes, with the largest borehole containing 218 continuously measured MS samples and the smallest containing 108 continuously measured values. The dataset includes mass magnetic susceptibility data from all seven boreholes, accompanied by lithological descriptions of the respective samples. The significance of such datasets resides in their ability to foster transparency and collaboration, thereby facilitating cross-disciplinary research that may enhance the methodology of the MS method. The dataset is intended not only for geophysicists, geoscientists, and geologists, but also for data analysts, statisticians, and data scientists who may leverage the data to devise potential methodologies that could enhance the MS method and improve its efficiency in the future.
DOI: 10.15468/dl.dknsun
title: Occurrence Download

description: A dataset containing 2140802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Catharus ustulatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2140802 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049942-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.undzzw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia faba",
 "Country is Angola",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049968-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vm4cj4
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crenicichla menezesi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 107 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049970-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvz6yz
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia faba",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 95 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049969-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64mynt
title: Occurrence Download

description: A dataset containing 170781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cecropis abyssinica)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 170781 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049949-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16443647
title: Coral_Reef_MGWR_Pramuka_2025
DOI: 10.5281/zenodo.16443648
title: Coral_Reef_MGWR_Pramuka_2025
DOI: 10.15468/dl.8pzqkd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049971-250717081556266/datasets/export for details.
DOI: 10.15468/dl.usgeu8
title: Occurrence Download

description: A dataset containing 588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perccottus glenii",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 588 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049973-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12582291
title: Synthetic House Price Prediction Datasets
DOI: 10.15468/dl.wjyn5d
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nothobranchius rubripinnis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049974-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.