cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3wv3szky46
title: Supplementary data for the article: Fur microbiome as a putative source of symbiotic bacteria in sucking lice

description: Alignments folder:
1. Full 16S rRNA matrix - full matrix of 16S rRNA fragments corresponding to amplicon screening analyzed by IQ-TREE in fasta format
2. 27-taxa 16S rRNA matrix - reduced matrix of 16S rRNA fragments corresponding to amplicon screening analyzed by PhyML in fasta format 
3. Neisseriales matrix - concatenated matrix of 50 ortholog sequences (AA) extracted from representative set of available proteomes for Neisseriales (analyzed by IQ-TREE and PhyloBayes) in a fasta format

Phylogenetic trees folder:
Phylogenetic trees generated by PhyML, IQ-TREE and PhyloBayes in a newick format.

Annotations folder:
Annotations of the genomes and genome drafts used for comparisons (characteristics, metabolism) in gbk format.

K numbers folder:
K numbers generated by BlastKOALA server for corresponding genomes.

Detailed description of used methods can be found in the Materials and Methods section.
DOI: 10.17632/67v3272wt7
title: Influence of melanoma type on incidence and downstream implications of cutaneous immune-related adverse events in the setting of immune checkpoint inhibitor therapy

description: Supplemental Materials for the manuscript: Influence of melanoma type on incidence and downstream implications of cutaneous immune-related adverse events in the setting of immune checkpoint inhibitor therapy
DOI: 10.17632/zddy95648h
title: 3D velocity model

description: 1. 3D P and S velocity model 
2. Traveltime Data (P and S phases)
DOI: 10.17632/29r6fpkshk
title: Gezovich et al., 2023 - Quantification of delta and fluvial fan channel networks reveals distinct formative processes

description: Version 6.4.8 of the Jupyter notebook (Anaconda) was used for creating and running the python code necessary for analyses and figure generation.
DOI: 10.15468/dl.pda6e4
title: Occurrence Download

description: A dataset containing 4849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Agriopis marginaria (Fabricius)"
 ]
}

 The dataset includes 4849 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009134-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3v376xwmwh
title: Running spatio-temporal parameter variability - "Stride" package

description: R scripts (package "Stride") used to process data on spatio-temporal running parameters (step time TS, flight time TV, contact time TC, duty factor DF, cadence C and estimated vertical leg stiffness Kleg) obtained using an Optogait system (Optogait, Microgate, Bolzano, Italy). The scripts synthesise and clean the data and then calculate various variability indices as a function of the length of the time series. Linear (coefficient of variation, standard deviation) and non-linear (coefficient alpha 1 of detrend fluctuation analysis, Higuchi fractal index, box counting algorithm) cycle-by-cycle analyses are performed according to the calculation recommendations (Phinyomark et al. DOI :10.3389/fphys.2020.00333).
The processing is done in several steps: first, the time series are extracted and outliers are managed, then analyses by time series and series size are performed , and finally the data are concatenated . An example of a dataset obtained using this procedure is attached (concatenated_files_12.xls). It contains a data set from 25 subjects who ran on a treadmill (Medical Treadmill, MONARK, Sverige) for 3 sessions of 6 minutes each, 24 hours apart. All subjects were trained to run on a treadmill. All participants ran more than twice a week for at least two years. Their age ranged between (20-36) years, body mass index (18.3-24.5) kg/m², running experience (3-15) years, kilometres run per year (1000-2500) km. This data set was collected as part of an ethics committee approved study (RCB number ID-RCB: 2019-A03012-55). 
Outlier detection was performed according to previously published values (García-Pinillos et al. DOI: 10.2478/hukin-2019-0098), obtained with the same instrument. Outlier management was performed using the imputeTS package, which has been validated for outlier management in biological time series. (http://cran.r-project.org/package=imputeTS ; http://cran.r-project.org/web/packages/imputeTS/imputeTS.pdf)
DOI: 10.6084/m9.figshare.25368598.v1
title: NanoBit assay data

description: OD (600 nm) and luminescence (460 nm) readings for NanoBit assays.
DOI: 10.17632/7kbsmx94zm
title: Structured odorant response patterns across a complete olfactory receptor neuron population. Si et al

description: Raw activity data of 21 ORNs responding to 34 odorants at multiple concentration levels collected from 238 recordings.
DOI: 10.17632/gywn9hr9jg
title: Archaeological Data and other Heritage from Caldas da Rainha (Portugal)

description: The data presented was processed by an interdisciplinary team between 2017 and 2021 from the Polytechnic Institute of Tomar and CAAPortugal, lidered by Alexandra Figueiredo e Cláudio Monteiro. It is associated with the municipal director plan and is considered relevant for recognizing the region's occupation and identifying areas with the greatest historical heritage impact. This information is essential for future territorial management projects and public-private construction works. The presented data is part of the geopackage created in ArcGIS Pro (Esri), including studies on landscape evolution (lagoon) and observations of various heritage elements, such as archaeological, ethnographic, paleontological, military, and religious sites. It also includes a data table with archaeological remains, chronologies, and observed findings, as well as site records with images. Additionally, the publication of the Archaeological Map provides a more detailed understanding of the data.
DOI: 10.17632/kjzr7g74nk
title: Data for: Steering the propagation direction of a non-linear acoustic wave in a solid material

description: Ultrasonic data from non-collinear wave mixing experiments.
DOI: 10.17632/733dz4xym9
title: Supplemental Figure 1. PRISMA Diagram

description: PRISMA diagram for A Systematic Review of Laser Therapy For Vulvar Skin Conditions
DOI: 10.17632/gwk53dtpfw
title: survey and RFID timestamp data of patients

description: The dataset consists of timestamp data of each patient and the patient experience survey data. The timing data of each patient is collected using an RFID machine. An RFID card is given to each patient which he swipes on the stations RFID machine which records the patients timestamp at each station. After visiting the doctor the patient fills the automated survey form that has 18 questions regarding services of six stations on Tablet PC. The dataset is comprised of 200 patients of a local hospital. The dataset is valuable as their correlation helps in the development of automated patient experience management system using an intelligent algorithm.
DOI: 10.17632/sk8ky4n8db
title: Data for: End-to-end efficiency quantification of an autonomous underwater vehicle propulsion system

description: Experimental measurements of a series of AUV propellers. Data include: - regressed force coefficients per propeller per advance speed - final self propelled operating points - 2D xfoil predictions for the propeller section at r/R of 0.7 - motor-gearbox efficiency data
DOI: 10.21233/yh7g-2x98
title: Desor Lead 210 dataset

description: Raw data for the Desor Lead 210 dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/3g3ngrxpfm
title: Apoyo social y autocuidado en pacientes con Tuberculosis Pulmonar 

description: Estudio realizado con pacientes portadores de Tuberculosis pulmonar de un hospital de Lima-Este. Con enfoque cuantitativo, observacional. Se analiza el apoyo social que reciben y cómo ésta variable se relaciona con el autocuidado que ellos realizan. Los instrumentos fueron aplicados a la muestra que corresponde a 100 personas entre TBP – sensibles, tuberculosis sensible a los medicamentos, que es la más común y el tratamiento dura seis meses aproximadamente y TBP – MDR, tuberculosis multirresistente, aquella que no responde a los medicamentos usados para la sensible y en la que tiene que utilizar de otro tipo; este tratamiento puede durar entre 18 y 24 meses. El estudio demostró que existe relación entre apoyo social y el autocuidado en pacientes con tuberculosis pulmonar, los resultados confirman que existe correlación con un valor r=,969 con p=0,001 el cual se interpreta como una relación muy alta con significancia estadística. Del mismo modo se identificó una relación alta entre las dimensiones del apoyo social: nutrición e hidratación (Rho=0,861; p=0,001), descanso y sueño (Rho=0,867; p=0,001), cuidado preventivo (Rho=0,905; p=0,001) y cumplimiento del esquema de tratamiento (Rho=0,914; p=0,001) con el autocuidado. Un paciente con tuberculosis al entrar en la fase de tratamiento, se hace necesario el apoyo social y familiar a fin de impulsar o motivar a que el paciente obtenga fortaleza para continuar con el proceso de tratamiento establecido por el PNCT y de ese modo realizar todas las  actividades inherentes hasta la culminación y su mejoría anhelada.
DOI: 10.17632/whcw8d28w5
title: Data for: Metabolic profiling of norepinephrine reuptake inhibitor atomoxetine

description: LC-MS data of mouse urine used for Metabomoic analysis
DOI: 10.17632/3fg277j4vz
title: Oxygen isotopes of waters and bivalves from the Coorong Lagoon, South Australia, from 2016-2018

description: To assess the fractionation of oxygen isotopes into the bivalve species Arthritica helmsi, live bivalve shells were collected alongside the waters in which they inhabit. Samples were collected at sites along the Coorong Lagoon and Lake Alexandrina in South Australia – the estuarine system at the terminus of Australia’s Murray River. Whole shell analyses of oxygen and carbon isotopes (n = 135) were measured on samples collected on 6 occasions from November 2016 to May 2018. Oxygen and hydrogen isotope analyses of waters were measured along with salinity and temperature monthly over the same time period (n = 137).
DOI: 10.17632/49v2f4r7js
title: Supplemental Material

description: Supplemental Materials
DOI: 10.17632/jpr32dzp8g
title: KEWPIE2: A cascade code for the study of dynamical decay of excited nuclei

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract KEWPIE–a cascade code devoted to investigating the dynamical decay of excited nuclei, specially designed for treating very low probability events related to the synthesis of super-heavy nuclei formed in fusion–evaporation reactions–has been improved and rewritten in C++ programming language to become KEWPIE2. The current version of the code comprises various nuclear models concerning the light-particle emission, fission process and statistical properties of excited nuclei. General features of... Title of program: KEWPIE2 Catalogue Id: AEZB_v1_0 Nature of problem Estimating evaporation-residue cross-sections and average fission times related to the synthesis of super-heavy elements. Versions of this program held in the CPC repository in Mendeley Data AEZB_v1_0; KEWPIE2; 10.1016/j.cpc.2015.12.003
DOI: 10.17632/k3468ytrtn
title: SEXUALIDAD, FUNCIONALIDAD FAMILIAR Y CALIDAD DE VIDA DE LAS PERSONAS MAYORES

description: Banco de dados sobre sexualidade, funcionalidade familiar e qualidade de vida de pessoas idosas
DOI: 10.6084/m9.figshare.18675887.v2
title: Data for The speed limit of optoelectronics

description: <b>Data fo</b><b>r</b><b> </b><b>The speed limit of optoelectronics</b><br>M. Ossiander1,6,*, K. Golyari1,2, K. Scharl1,2, L. Lehnert1,2, F. Siegrist1,2, J. P. Bürger1,2, D. Zimin1,2, J. A. Gessner1,2, M. Weidman1,2, I. Floss3, V. Smejkal3, S. Donsa3, C. Lemell3, F. Libisch3, N. Karpowicz4, J. Burgdörfer3, F. Krausz1,2,*, M. Schultze2,51 Max-Planck-Institut für Quantenoptik, Hans-Kopfermann-Str. 1, 85748 Garching, EU, Germany. <br>2 Fakultät für Physik, Ludwig-Maximilians-Universität München, Am Coulombwall 1, 85748 Garching, EU, Germany. <br>3 Institute for Theoretical Physics, Vienna University of Technology, Wiedner Hauptstrasse 8-10, 1040 Vienna, EU, Austria. <br>4 CNR NANOTEC Institute of Nanotechnology, via Monteroni, 73100 Lecce, EU, Italy. <br>5 Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, 8010 Graz, EU, Austria. <br>6 Present address: John A. Paulson School of Engineering and Applied Sciences, Harvard University, 29 Oxford St, Cambridge, MA 02138, USA. <br>* Corresponding Authors: mossiander@g.harvard.edu; ferenc.krausz@mpq.mpg.deManuscript published in <b>Nature Communications 13, 1620 (2022),</b> https://www.nature.com/articles/s41467-022-29252-1The data in the files time_domain_comparison_lpps_streaking.hdf5 and spectral_domain_comparison_lpps_streaking.hdf5 is the base for Fig. 2.<br>The data in files powerscan_lif.hdf5 and powerscan_neon.hdf5 is the base for Fig. 3.<br>Methods are described in the publication.
DOI: 10.17632/n2gx5h9bxb
title: composite material

description: The folder contains the original image and fractal feature reconstruction image of the oxidized surface of the composite after thermal shock
DOI: 10.17632/rx663ccyvv
title: Data for: Behavior of the Mo, Tl, and U isotope systems during differentiation in the Kilauea Iki lava lake

description: Mo, U, and Tl isotope data for samples from the Kilauea Iki lava lake.
DOI: 10.6084/m9.figshare.4292216.v1
title: data_qm9.pkl

description: qm9 data set in python2 dictionary
DOI: 10.17632/bxrz3t4gwx
title: Bangladeshi July Revolution & Visual Representation Impacts: A Film Impact Aspect

description: The paper discusses the role of visual media in the mass imagination of the July Revolution in Bangladesh, with special emphasis on social media reels and their cinematic documentation. Viral footages from social media platforms, especially videos featuring Abu Sayeed and Mir Mugdho, played a vital role in galvanizing national sentiment, inspiring widespread participation, and exposing state oppression. By analyzing audience responses through surveys, focus groups, and filmmaker interviews, this research explores how real-time visual representation connects with audiences emotionally and psychologically. Findings indicate that social media’s immediacy and relatability fostered a deep sense of engagement, while traditional cinema holds the potential to preserve the revolution’s legacy through reflective storytelling. The study concludes by emphasizing the need for hybrid documentation—combining real-time footage with cinematic narratives—to ensure the July Revolution remains an enduring symbol of unity, resilience, and justice in Bangladeshi cultural memory.
DOI: 10.17632/pty6hwbgnw
title: Hypoglycemic effect of NeuroEPO in diabetic and non-diabetic rats

description: We conducted experiments in Wistar rats with streptozotocin-induced diabetes, with and without insulin treatment, and in non-diabetic rats with glucose overload
DOI: 10.17632/r7x7khbbcv
title: Data for paper: Stability and kinetics of amorphous calcium carbonate and ikaite dissolutions in seawater at -5ºC to 10ºC for ocean alkalinity enhancement

description: Raw data for all figures and tables in the manuscript by Bastianini et al. to be published by Geochimica et Cosmochimica Acta as "Stability and kinetics of amorphous calcium carbonate and ikaite dissolutions in seawater at -5ºC to 10ºC for ocean alkalinity enhancement".
DOI: 10.17632/6s7vy929dc
title: Microenvironmental Control of Hematopoietic Stem Cell Fate via CXCL8 and Protein Kinase C

description: Altered hematopoietic stem cell (HSC) fate underlies primary blood disorders but microenvironmental factors controlling this are poorly understood.  Genetically barcoded GESTALT zebrafish were used to screen for factors expressed by the sinusoidal vascular niche that alter the phylogenetic distribution of the HSC pool under native conditions.  Dysregulated expression of protein kinase C delta (PKC-delta, encoded by prkcda) increased the number of HSC clones by up to 80% and expanded polyclonal populations of immature neutrophil and erythroid precursors.  PKC agonists such as cxcl8 augmented HSC competition for residency within the niche and expanded defined niche populations.  CXCL8 induced association of PKC-delta with the focal adhesion complex, activating ERK signaling and expression of niche factors in human endothelial cells.  Our findings demonstrate the existence of reserve capacity within the niche which is controlled by CXCL8 and PKC and has significant impact on HSC phylogenetic and phenotypic fate.
DOI: 10.17632/8s4jscy93m
title: ACP_2020-220

description: Data outputs from the joint inversion study done in HTTP://www.atmos-chem-phys-discuss.net/acp-2020-220/ The format of the file is MATLAB (.mat). The file consists of: Lat (Latitude coordinates) Lon (Longitude coordinates) AKs_NOx (averaging kernels for top-down NOx) AKs_VOC (averaging kernels for top-down VOC) Ratio_NOx (ratio of the posterior to the prior emissions) Ratio_VOC (ratio of the posterior to the prior emissions) Error_Prior_NOx (error assumed in the a priori, they are in 0-1 relative unit with respect to the prior values). Error_Prior_VOC (error assumed in the a priori, they are in 0-1 relative unit with respect to the prior values). Error_Post_NOx (estimated errors in the a posteriori, they are in 0-1 relative unit with respect to the posterior values). Error_Post_VOC (estimated errors in the a posteriori, they are in 0-1 relative unit with respect to the posterior values).
DOI: 10.17632/brhk5z23bh
title: Data Repository for Adsorption Kinetics of Perfluorononanoic Acid (PFNA) and Perfluorodecanoic Acid (PFDA) on Biochar

description: This data repository contains the experimental data from a study investigating the adsorptive removal of perfluorononanoic acid (PFNA) and perfluorodecanoic acid (PFDA) using biochar as the adsorbent. The dataset provides detailed measurements of PFNA and PFDA concentrations over time, as well as the corresponding biochar characteristics, including particle size and weight.

The study aimed to evaluate the effectiveness of biochar, derived from different sources, in adsorbing long-chain perfluoroalkyl carboxylic acids (PFCAs) from aqueous solutions. The dataset includes time-resolved concentration data of PFNA and PFDA, which are critical for understanding the kinetics of adsorption. The experiments were conducted with specific biochar sizes ranging from 841 to 1000 microns and at a consistent biochar weight of 25 mg.

Researchers and practitioners can use this dataset to model adsorption kinetics, evaluate the performance of biochar as an adsorbent, and develop predictive models for PFCA removal in water treatment processes. The dataset is suitable for use in various analytical and computational studies, including those focused on environmental engineering, water treatment, and adsorption process optimization.
DOI: 10.17632/z8phkgphm9
title: Black Swan events in the financial market: A network approach

description: The data set consists of 483 stocks that were continuously traded on the S&P 500 Index in the period from June 28, 2016 to August 9, 2023, and each stock has 1,791 data points of the daily closing price adjusted for splits and dividends. Sample data are separated into two subsets: the stabilization period before the market crash and the market disruption period during the COVID-19 pandemic and the Russian-Ukrainian war. The cut-off point for the separation of the two sub-periods was set on January 20, 2020. Therefore, the stabilization period is defined between June 29, 2016 and January 17, 2020; the market disruption period is set between January 21, 2020 and August 09, 2023. The split between the two periods is equal, with 895 time series in each period (approximately 3.5 years). Companies are classified into 11 economic sectors according to the classification of Yahoo Finance. These historical data were collected from Yahoo Finance (https://finance.yahoo.com; accessed on 10.09.2023). The data set contains two matrices of cross-correlation networks of stock returns, based on the minimal spanning tree approach for the aforementioned time periods.
DOI: 10.17632/m5mvnm8cbw
title: The dataset for article 6,000-yr reconstruction of Modified Circumpolar Deep Water intrusion and its effects on sea ice and penguin in the Ross Sea

description: The radiocarbon dating results and Cd/P ratios for the selected subsamples from 13 ornithogenic sediment profiles in Inexpressible Island
DOI: 10.15468/dl.7n579u
title: Occurrence Download

description: A dataset containing 280 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paratilapia polleni Bleeker, 1868"
 ]
}

 The dataset includes 280 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009135-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26162332.v4
title: Supplementary Material for: Effects of Simvastatin on inflammatory response and biological behavior of adamantinomatous craniopharyngioma

description: Introduction: To investigate the autoinflammatory effect and biological behaviour of simvastatin (SIM) on adamantinomatous craniopharyngioma (ACP) cells. Methods: Craniopharyngiomas imaging, intraoperative observations, and tumour histopathology were employed to investigate the correlation between esters and craniopharyngiomas. Filipin III fluorescent probe verified the validity of SIM on the alternations of synthesized cholesterol in craniopharyngioma cells. The cell counting kit-8 (CCK8) assay detected the impacts of SIM on cell proliferation and determined the IC50 value of tumour cells. Reverse transcription polymerase chain reaction (RT-PCR) measured the expression of inflammatory factors. Flow cytometry technique detected the cell cycle and apoptosis, and cell scratch assay judged the cell migration. Meanwhile, Western blot was adopted to determine the expression of proteins related to inflammation, proliferation, and apoptosis signalling pathways. Results: In the ACP tumour parenchyma, many cholesterol crystalline clefts were observed, and the deposition of esters was closely associated with craniopharyngioma inflammation. After simvastatin intervention, a reduction in cholesterol synthesis within ACP was noted. RT-PCR analysis revealed SIM inhibited the transcription of inflammatory factors in ACP cells. Western blot analysis demonstrated SIM inhibited nuclear factor-kappa B (NF-κB) p65 activation expression while promoted the expressions of Cl-caspase-3 and P38 MAPK. CCK8 assay indicated a decrease in ACP cell activity upon SIM treatment. Scratch assay signified that SIM hindered ACP cell migration. Flow cytometry results suggested that the drug promoted ACP cell apoptosis. Conclusion: SIM suppressed the inflammatory response to craniopharyngiomas by inhibiting craniopharyngioma cholesterol synthesis, inhibited proliferation of ACP cells, and promoted their apoptosis.