cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6077228.v1
title: Additional file 1: of The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool

description: Supporting Information. This file contains all the supporting information that is related to the manuscript, including additional results, figure captions and tables. This file is to be published online as Supporting Information. The figures are included in separate files and labeled Figures S1â S8. (ZIP 20215Â kb)
DOI: 10.6084/m9.figshare.6077219
title: Additional file 14: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S12. Result of SIMPER analysis. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6077219.v1
title: Additional file 14: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S12. Result of SIMPER analysis. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.6077207
title: Additional file 13: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S11. OTU table for all samples. (XLSX 222Â kb)
DOI: 10.6084/m9.figshare.6077207.v1
title: Additional file 13: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S11. OTU table for all samples. (XLSX 222Â kb)
DOI: 10.6084/m9.figshare.6077174
title: Additional file 11: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S10. Taxa levels and abundances. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6077174.v1
title: Additional file 11: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S10. Taxa levels and abundances. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6077171
title: Additional file 1: of Euterpe oleracea extract inhibits tumorigenesis effect of the chemical carcinogen DMBA in breast experimental cancer

description: Raw Data. Raw data from tumor volume and weight, ELISA (PGE2, IL-10 and VEGF) and morphometric quantification (VEGF, VEGFR-2, MMP-9 and COX-2). (XLSX 37 kb)
DOI: 10.6084/m9.figshare.6077171.v1
title: Additional file 1: of Euterpe oleracea extract inhibits tumorigenesis effect of the chemical carcinogen DMBA in breast experimental cancer

description: Raw Data. Raw data from tumor volume and weight, ELISA (PGE2, IL-10 and VEGF) and morphometric quantification (VEGF, VEGFR-2, MMP-9 and COX-2). (XLSX 37 kb)
DOI: 10.6084/m9.figshare.6077159
title: Additional file 10: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S9. Assembled reads. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6077159.v1
title: Additional file 10: of Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil

description: Table S9. Assembled reads. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.6077150
title: MOESM3 of Epigenetics and early domestication: differences in hypothalamic DNA methylation between red junglefowl divergently selected for high or low fear of humans

description: Additional file 3: Table S2. Sex-specific differentially-methylated (DM) windows. The MEDIPS analysis yielded 66 DM windows in males and 66 windows in females at p
DOI: 10.6084/m9.figshare.6077150.v1
title: MOESM3 of Epigenetics and early domestication: differences in hypothalamic DNA methylation between red junglefowl divergently selected for high or low fear of humans

description: Additional file 3: Table S2. Sex-specific differentially-methylated (DM) windows. The MEDIPS analysis yielded 66 DM windows in males and 66 windows in females at p
DOI: 10.6084/m9.figshare.6077114
title: MOESM1 of Epigenetics and early domestication: differences in hypothalamic DNA methylation between red junglefowl divergently selected for high or low fear of humans

description: Additional file 1: Table S1. Randomized resampling to validate results, with distribution of HFH and LFH animals in each randomization. Three females and three males were selected at random from the pool of samples, while also allowing for resampling of the same individual more than once. Two groups were generated and analyzed using MEDIPS and the same parameters as those set for the treatment groups. The procedure was repeated 20 times. HFH—High Fear of Humans, LFH—Low Fear of Humans.
DOI: 10.6084/m9.figshare.6077114.v1
title: MOESM1 of Epigenetics and early domestication: differences in hypothalamic DNA methylation between red junglefowl divergently selected for high or low fear of humans

description: Additional file 1: Table S1. Randomized resampling to validate results, with distribution of HFH and LFH animals in each randomization. Three females and three males were selected at random from the pool of samples, while also allowing for resampling of the same individual more than once. Two groups were generated and analyzed using MEDIPS and the same parameters as those set for the treatment groups. The procedure was repeated 20 times. HFH—High Fear of Humans, LFH—Low Fear of Humans.
DOI: 10.6084/m9.figshare.6076313
title: Representations of military women in the Australian print media

description: This data set represents the sample of a content analysis of two Australian broadsheets; the <i>Australian</i> and the . <i>Sydney Morning Herald</i> between 1997 and 2017, exploring three categories 1. Gendered violence 2. Combat 3. Organisational.
DOI: 10.6084/m9.figshare.6076313.v1
title: Representations of military women in the Australian print media

description: This data set represents the sample of a content analysis of two Australian broadsheets; the <i>Australian</i> and the . <i>Sydney Morning Herald</i> between 1997 and 2017, exploring three categories 1. Gendered violence 2. Combat 3. Organisational.
DOI: 10.6084/m9.figshare.6076298
title: Dataset for: Probing long-range spin-spin coupling constants in 2-halo-substituted cyclohexanones and cyclohexanethiones: the role of solvent and stereoelectronic effects

description: Earlier studies with 2-bromocyclohexanone demonstrated a measurable long-range coupling constant (4JH2,H6) for the equatorial conformer, while 4JH2,H4 and 4JH4,H6 were not observed; as a consequence, it is inferred that the carbonyl group plays an important role particularly due to hyperconjugative interactions C2H2→*C=O and C6H6→*C=O. In the present study, NBO analysis and coupling constant calculations were performed to cyclohexanone and cyclohexanethione alpha substituted with F, Cl and Br, aiming to evaluate the halogen effect and acceptor character of the π* orbital on the long-range coupling pathway. The C2H2→*C1=Y and C6H6→*C1=Y (Y = O e S) hyperconjugative interactions for the equatorial conformer indeed contribute for the 4JH2,H6 transmission mechanism. Surprisingly, the 4JH2,H6 value is higher for the carbonyl compounds, although the interactions C2H2→*C=Y and C6H6→*C=Y are more efficient for the thiocarbonyl compounds. Accordingly, the Fermi Contact (FC) contribution for the thiocarbonyl compounds decays deeper than in ketones, thus reducing more the 4JH2,H6 values. Moreover, both C=S  *C-X and C=S  *C-H interactions seem to be stronger in thiocarbonyl than in carbonylic compounds. The implicit solvent effect (DMSO and water) on the coupling constant values was negligible when compared to the gas phase. On the other hand, an explicit solvent effect was found and 4JH2,H6 for the thiocarbonyl compounds appeared to be more sensitive than for the cyclohexanones.
DOI: 10.6084/m9.figshare.6076292
title: Representations of military women in the Australian print media

description: The data represents the articles included in a sample of two Australian broadsheets and their representation of Australian military women in the print media. The data here represent the entire sample with some outcomes of analysis. The articles are coded according to category, date, no. of words, page no, author name and gender and also indicates whether the article includes comment from (direct quotation) from women in the military and / or discusses the experience of women in the military.
DOI: 10.6084/m9.figshare.6076292.v1
title: MASTER DOC - All articles SYDNEY MORNING HERALD .xlsx

description: The data represents the articles included in a sample of two Australian broadsheets and their representation of Australian military women in the print media. The data here represent the entire sample with some outcomes of analysis. The articles are coded according to category, date, no. of words, page no, author name and gender and also indicates whether the article includes comment from (direct quotation) from women in the military and / or discusses the experience of women in the military.
DOI: 10.6084/m9.figshare.6076106
title: DNDC_N2O_CA.zip

description: The data from the paper entitled “Assessing short term impacts of management practices on N<sub>2</sub>O emissions from diverse Mediterranean agricultural ecosystems using a biogeochemical model”.
DOI: 10.6084/m9.figshare.6076106.v1
title: DNDC_N2O_CA.zip

description: The data from the paper entitled “Assessing short term impacts of management practices on N<sub>2</sub>O emissions from diverse Mediterranean agricultural ecosystems using a biogeochemical model”.
DOI: 10.6084/m9.figshare.6076082
title: Experiences of Using the Toll Free Telephone Line to Access Maternal and Newborn Health Services in Central Uganda: A Qualitative Study

description: Maternal mortality remains a significant public health challenge in Sub-Saharan Africa. Most of these deaths are preventable and can be addressed with low cost, effective interventions with an understanding of the <i>three delays</i> associated with maternal morbidity and mortality. This qualitative study used Focused Group Discussions (FGDs) to collect data in four health facilities. A total of 10 FGDs were conducted; two with health workers, four with women, and another four with both men and women. Each session lasted 45-60 minutes and had a moderator, observer and note taker. All discussions were audio recorded after obtaining consent from the participants. Interviews were transcribed verbatim and translated to English from audio recordings. Data analysis was performed using the thematic analysis with major themes determined appriori while sub themes emerge using QDA DATA Miner software. This data comprises of 10 full text transcripts from the group discussion sessions<br><br><br><br>
DOI: 10.17045/sthlmuni.6075923
title: The Swedish Contextual Database.zip

description: The construction of the Swedish CDB and the data collection followed a template developed within the GGP. The template provided detailed guidelines for the collection, preparation, and documentation of the indicators. The database covers 16 main areas: Demography, Economy and Social Aspects, Labour and Employment, Parental Leave, Pension, Childcare, Military, Unemployment, Tax Benefits, Housing, Legal Aspects, Education, Health, Elderly Care, Politics, Culture. Each of these main domains contains more detailed indicators at the national or subregional (Riskområde NUTS2) level. In total, there are 243 indicators. Many of these indicators were calculated using Swedish Register Data. These indicators were not available in publicly accessible statistics and the Swedish CDB is thus currently the only database to provide them. The Swedish CDB offers a rich and unique set of time-series indicators at the national and subregional level.<br>
DOI: 10.17045/sthlmuni.6075923.v1
title: The Swedish Contextual Database.zip

description: The construction of the Swedish CDB and the data collection followed a template developed within the GGP. The template provided detailed guidelines for the collection, preparation, and documentation of the indicators. The database covers 16 main areas: Demography, Economy and Social Aspects, Labour and Employment, Parental Leave, Pension, Childcare, Military, Unemployment, Tax Benefits, Housing, Legal Aspects, Education, Health, Elderly Care, Politics, Culture. Each of these main domains contains more detailed indicators at the national or subregional (Riskområde NUTS2) level. In total, there are 243 indicators. Many of these indicators were calculated using Swedish Register Data. These indicators were not available in publicly accessible statistics and the Swedish CDB is thus currently the only database to provide them. The Swedish CDB offers a rich and unique set of time-series indicators at the national and subregional level.<br>
DOI: 10.6084/m9.figshare.6075863
title: Fluorescence Microscopy of Rice Root Colonization by Synechocystis sp. PCC 6803 (PCC-M)

description: <b>Co-Inoculation of Rice roots with cyanobacteria</b><b><br></b>Glass cultivation tubes (Photosystem Instruments, PSI) containing 100 mL BG11 liquid medium were inoculated with <i>Synechocystis</i> sp. PCC 6803 (PCC-M) to an optical density (OD<sub>750</sub>) of 0.15. To investigate the relevance of type IV piliation on root colonization the non-piliated mutant Δ<i>hfq </i>was applied as a control. Roots of young rice seedlings (variety Kitaake; ~ 1 week after germination) were pulled through the outflow holes of the silicone plugs (PSI) and submerged into the inoculated BG11 medium. Co-cultivation took place at ~30 °C under constant illumination (~ 100 μmol photons m<sup>-2</sup> s<sup>-1</sup>, Environmental Test Chamber, Sanyo).In oder to visualize root colonization, bright field and (cyanobacterial) Chlorophyll <i>a</i> autofluorescence were recorded after 2 weeks of co-cultivation. Three different magnifications (10x, 63x, 100x [w/ immersion oil]) were applied; bright field and fluorescence figures were merged using the ImageJ software. <br>Three major observations were made:<br>1. root colonization of roots by wild-type <i>Synechocystis </i>but not by the non-motile mutant Δ<i>hfq</i><i><br></i>2.<i> </i>wild-type <i>Synechocystis </i>appear to build biofilm-like assemblies surrounding the root surface<br><br>3. wild-type <i>Synechocystis</i> cells<i> congregate</i> inside of small but abundant cracks on the root surface <br>
DOI: 10.6084/m9.figshare.6075863.v2
title: Fluorescence Microscopy of Rice Root Colonization by Synechocystis sp. PCC 6803 (PCC-M)

description: <b>Co-Inoculation of Rice roots with cyanobacteria</b><b><br></b>Glass cultivation tubes (Photosystem Instruments, PSI) containing 100 mL BG11 liquid medium were inoculated with <i>Synechocystis</i> sp. PCC 6803 (PCC-M) to an optical density (OD<sub>750</sub>) of 0.15. To investigate the relevance of type IV piliation on root colonization the non-piliated mutant Δ<i>hfq </i>was applied as a control. Roots of young rice seedlings (variety Kitaake; ~ 1 week after germination) were pulled through the outflow holes of the silicone plugs (PSI) and submerged into the inoculated BG11 medium. Co-cultivation took place at ~30 °C under constant illumination (~ 100 μmol photons m<sup>-2</sup> s<sup>-1</sup>, Environmental Test Chamber, Sanyo).In oder to visualize root colonization, bright field and (cyanobacterial) Chlorophyll <i>a</i> autofluorescence were recorded after 2 weeks of co-cultivation. Three different magnifications (10x, 63x, 100x [w/ immersion oil]) were applied; bright field and fluorescence figures were merged using the ImageJ software. <br>Three major observations were made:<br>1. root colonization of roots by wild-type <i>Synechocystis </i>but not by the non-motile mutant Δ<i>hfq</i><i><br></i>2.<i> </i>wild-type <i>Synechocystis </i>appear to build biofilm-like assemblies surrounding the root surface<br><br>3. wild-type <i>Synechocystis</i> cells<i> congregate</i> inside of small but abundant cracks on the root surface <br>
DOI: 10.6084/m9.figshare.6075863.v1
title: Fluorescence Microscopy of Rice Root Colonization by Synechocystis sp. PCC 6803 (PCC-M)

description: <b>Co-Inoculation of Rice roots with cyanobacteria</b><b><br></b>Glass cultivation tubes (Photosystem Instruments, PSI) containing 100 mL BG11 liquid medium were inoculated with <i>Synechocystis</i> sp. PCC 6803 (PCC-M) to an optical density (OD<sub>750</sub>) of 0.15. To investigate the relevance of type IV piliation on root colonization the non-piliated mutant Δ<i>hfq </i>was applied as a control. Roots of young rice seedlings (variety Kitaake; ~ 1 week after germination) were pulled through the outflow holes of the silicone plugs (PSI) and submerged into the inoculated BG11 medium. Co-cultivation took place at ~30 °C under constant illumination (~ 100 μmol photons m<sup>-2</sup> s<sup>-1</sup>, Environmental Test Chamber, Sanyo).In oder to visualize root colonization, bright field and (cyanobacterial) Chlorophyll <i>a</i> autofluorescence were recorded after 2 weeks of co-cultivation. Three different magnifications (10x, 63x, 100x [w/ immersion oil]) were applied; bright field and fluorescence figures were merged using the ImageJ software. <br>Three major observations were made:<br>1. root colonization of roots by wild-type <i>Synechocystis </i>but not by the non-motile mutant Δ<i>hfq</i><i><br></i>2.<i> </i>wild-type <i>Synechocystis </i>appear to build biofilm-like assemblies surrounding the root surface<br><br>3. wild-type <i>Synechocystis</i> cells<i> congregate</i> inside of small but abundant cracks on the root surface <br>
DOI: 10.6084/m9.figshare.6075788
title: MSRC-v2 image dataset

description: Source: https://www.microsoft.com/en-us/research/project/image-understanding/?from=http://research.microsoft.com/vision/cambridge/recognition/
DOI: 10.6084/m9.figshare.6075770.v1
title: A cautionary tale on instrumental calibration for the treatment of nonignorable unit nonresponse in surveys

description: Response rates have been steadily declining over the last decades, making survey estimates vulnerable to nonresponse bias. To reduce the potential bias, two weighting approaches are commonly used in National Statistical Offices: the one-step and the two-step approaches. In this paper, we focus on the one-step approach, whereby the design weights are modified in a single step with two simultaneous goals in mind: reduce the nonresponse bias and ensure the consistency between survey estimates and known population totals. In particular, we examine the properties of instrumental calibration, a special case of the one-step approach that has received a lot of attention in the literature in recent years. Despite the rich literature on the topic, there remain some important gaps that this paper aims to fill. First, we give a set of sufficient conditions required for establishing the consistency of instrumental calibration estimators. Also, we show that the latter may suffer from a large bias when some of these conditions are violated. Results from a simulation study support our findings.
DOI: 10.6084/m9.figshare.6075764.v1
title: Probabilistic community detection with unknown number of communities

description: A fundamental problem in network analysis is clustering the nodes into groups which share a similar connectivity pattern. Existing algorithms for community detection assume the knowledge of the number of clusters or estimate it a priori using various selection criteria and subsequently estimate the community structure. Ignoring the uncertainty in the first stage may lead to erroneous clustering, particularly when the community structure is vague. We instead propose a coherent probabilistic framework for simultaneous estimation of the number of communities and the community structure, adapting recently developed Bayesian nonparametric techniques to network models. An efficient Markov chain Monte Carlo (MCMC) algorithm is proposed which obviates the need to perform reversible jump MCMC on the number of clusters. The methodology is shown to outperform recently developed community detection algorithms in a variety of synthetic data examples and in benchmark real-datasets. Using an appropriate metric on the space of all configurations, we develop non-asymptotic Bayes risk bounds even when the number of clusters is unknown. Enroute, we develop concentration properties of non-linear functions of Bernoulli random variables, which may be of independent interest in analysis of related models.
DOI: 10.6084/m9.figshare.6075758
title: Spatially Dependent Multiple Testing Under Model Misspecification, With Application to Detection of Anthropogenic Influence on Extreme Climate Events

description: The Weather Risk Attribution Forecast (WRAF) is a forecasting tool that uses output from global climate models to make simultaneous attribution statements about whether and how greenhouse gas emissions have contributed to extreme weather across the globe. However, in conducting a large number of simultaneous hypothesis tests, the WRAF is prone to identifying false “discoveries.” A common technique for addressing this multiple testing problem is to adjust the procedure in a way that controls the proportion of true null hypotheses that are incorrectly rejected, or the false discovery rate (FDR). Unfortunately, generic FDR procedures suffer from low power when the hypotheses are dependent, and techniques designed to account for dependence are sensitive to misspecification of the underlying statistical model. In this article, we develop a Bayesian decision-theoretical approach for dependent multiple testing and a nonparametric hierarchical statistical model that flexibly controls false discovery and is robust to model misspecification. We illustrate the robustness of our procedure to model error with a simulation study, using a framework that accounts for generic spatial dependence and allows the practitioner to flexibly specify the decision criteria. Finally, we apply our procedure to several seasonal forecasts and discuss implementation for the WRAF workflow. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.6075758.v1
title: Spatially-Dependent Multiple Testing Under Model Misspecification, with Application to Detection of Anthropogenic Influence on Extreme Climate Events

description: The Weather Risk Attribution Forecast (WRAF) is a forecasting tool that uses output from global climate models to make simultaneous attribution statements about whether and how greenhouse gas emissions have contributed to extreme weather across the globe. However, in conducting a large number of simultaneous hypothesis tests, the WRAF is prone to identifying false “discoveries.” A common technique for addressing this multiple testing problem is to adjust the procedure in a way that controls the proportion of true null hypotheses that are incorrectly rejected, or the false discovery rate (FDR). Unfortunately, generic FDR procedures suffer from low power when the hypotheses are dependent, and techniques designed to account for dependence are sensitive to misspecification of the underlying statistical model. In this paper, we develop a Bayesian decision theoretic approach for dependent multiple testing and a nonparametric hierarchical statistical model that flexibly controls false discovery and is robust to model misspecification. We illustrate the robustness of our procedure to model error with a simulation study, using a framework that accounts for generic spatial dependence and allows the practitioner to flexibly specify the decision criteria. Finally, we apply our procedure to several seasonal forecasts and discuss implementation for the WRAF workflow.