cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0204961.10fu
title: SH0204961.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.aan5rn
title: Occurrence Download

description: A dataset containing 4035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.29663980665342 -4.69585883204374,-75.29663980665342 -4.69585883204374,-75.29663980665342 -0.69585883204374,-79.29663980665342 -0.69585883204374,-79.29663980665342 -4.69585883204374))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ramphastos Linnaeus, 1758",
 "Year 1978-2022"
 ]
}

 The dataset includes 4035 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079022-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjrk73
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoma lineolata Desm.",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125559-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.veq92d
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pasiphaea barnardi Yaldwyn, 1971"
 ]
}

 The dataset includes 360 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128607-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4gxmx
title: Occurrence Download

description: A dataset containing 16781 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Sparganium natans L."
 ]
}

 The dataset includes 16781 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039108-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.846atm
title: Occurrence Download

description: A dataset containing 522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-80.8096010000000007 35.2187065999999973, -80.8096010000000007 35.2192867799999973, -80.8096010000000007 35.2206405200000034, -80.8096010000000007 35.2221876600000030, -80.8096010000000007 35.2233480100000023, -80.8096010000000007 35.2239926499999996, -80.8096010000000007 35.2251529999999988, -80.8083124199999929 35.2251529999999988, -80.8070883000000038 35.2251529999999988, -80.8050910599999952 35.2251529999999988, -80.8034803799999963 35.2251529999999988, -80.8023851199999967 35.2251529999999988, -80.8009032899999937 35.2251529999999988, -80.7993570000000005 35.2251529999999988, -80.7993570000000005 35.2242504999999966, -80.7993570000000005 35.2228967599999976, -80.7993570000000005 35.2216074800000030, -80.7993570000000005 35.2199958799999990, -80.7993570000000005 35.2187065999999973, -80.8009677200000027 35.2187065999999973, -80.8023851199999967 35.2187065999999973, -80.8033515200000068 35.2187065999999973, -80.8044467900000001 35.2187065999999973, -80.8056064799999945 35.2187065999999973, -80.8069594499999937 35.2187065999999973, -80.8077969999999937 35.2187065999999973, -80.8096010000000007 35.2187065999999973))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 522 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079020-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93b2r8
title: Occurrence Download

description: A dataset containing 1189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Anacyclus ×valentinus L."
 ]
}

 The dataset includes 1189 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039093-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5hf3g
title: Occurrence Download

description: A dataset containing 2770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Geomys breviceps Baird, 1855"
 ]
}

 The dataset includes 2770 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116237-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jh5963
title: Occurrence Download

description: A dataset containing 142862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Ononis spinosa L."
 ]
}

 The dataset includes 142862 records from 548 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039085-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzkt8z
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-76.1648883000000012 43.0242499000000009, -76.1648883000000012 43.0245632999999970, -76.1648883000000012 43.0249249199999966, -76.1648883000000012 43.0252624399999988, -76.1648883000000012 43.0259374600000015, -76.1648883000000012 43.0263231899999994, -76.1648883000000012 43.0266607000000008, -76.1645260100000030 43.0266607000000008, -76.1639221100000015 43.0266607000000008, -76.1634872999999999 43.0266607000000008, -76.1628350799999936 43.0266607000000008, -76.1624968999999936 43.0266607000000008, -76.1618446800000015 43.0266607000000008, -76.1612649399999952 43.0266607000000008, -76.1607818199999969 43.0266607000000008, -76.1602262300000064 43.0266607000000008, -76.1600088200000016 43.0266607000000008, -76.1593325000000050 43.0266607000000008, -76.1593325000000050 43.0263472999999976, -76.1593325000000050 43.0258651400000005, -76.1593325000000050 43.0253829800000034, -76.1593325000000050 43.0246838400000016, -76.1593325000000050 43.0242499000000009, -76.1597189499999985 43.0242499000000009, -76.1602503799999937 43.0242499000000009, -76.1606610399999937 43.0242499000000009, -76.1613374100000016 43.0242499000000009, -76.1616997499999968 43.0242499000000009, -76.1623519599999952 43.0242499000000009, -76.1628350799999936 43.0242499000000009, -76.1631007999999952 43.0242499000000009, -76.1635114500000014 43.0242499000000009, -76.1639704199999983 43.0242499000000009, -76.1642602900000014 43.0242499000000009, -76.1648883000000012 43.0242499000000009))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101541-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5byfrk
title: Occurrence Download

description: A dataset containing 3406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Pedicularis kerneri Dalla Torre"
 ]
}

 The dataset includes 3406 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039124-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hk2sv
title: Occurrence Download

description: A dataset containing 651323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2022-08-18",
 "EventDate is less than or equal to 2022-09-17",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 651323 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079015-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nydae
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phacellaria fargesii Lecomte"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072311-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.py6udc
title: Occurrence Download

description: A dataset containing 1347368 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((20.67 -19.24, 30.78 -19.24, 30.78 -13.55, 20.67 -13.55, 20.67 -19.24))"
 ]
}

 The dataset includes 1347368 records from 458 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072295-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sgx39
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Critomolgus magnificus (Humes, 1964)"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116229-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gsc3g7
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crossotonotus spinipes (De Man, 1888)"
 ]
}

 The dataset includes 129 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116254-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xuftfs
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pauridiantha setiflora (R.D.Good) Smedmark & B.Bremer"
 ]
}

 The dataset includes 140 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089305-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcb9dd
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pasiphaea chacei Yaldwyn, 1962"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128608-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfzzqs
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Didymella macrostoma (Mont.) Qian Chen & L.Cai",
 {
 "not" : {
 "Country" : [
 "is United States of America"
 ]
 }
 },
 {
 "not" : {
 "Country" : [
 "is Canada"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 }
 ]
}

 The dataset includes 479 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125567-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ny5zex
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cymbidium ensifolium (L.) Sw."
 ]
}

 The dataset includes 109 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116234-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dggpmb
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthyllis warnieri Emb."
 ]
}

 The dataset includes 19 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039090-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvw25n
title: Occurrence Download

description: A dataset containing 2770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Geomys breviceps Baird, 1855"
 ]
}

 The dataset includes 2770 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116235-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9geca
title: Occurrence Download

description: A dataset containing 34712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Pulsatilla vulgaris Mill."
 ]
}

 The dataset includes 34712 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039089-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwz8qn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bacidia rosella (Pers.) De Not."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010133-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7jsjz
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Hyparrhenia rufa (Nees) Stapf"
 ]
}

 The dataset includes 333 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000798-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpp69t
title: Occurrence Download

description: A dataset containing 14955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Prionace glauca (Linnaeus, 1758)"
 ]
}

 The dataset includes 14955 records from 210 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000799-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8t2dx
title: Occurrence Download

description: A dataset containing 1979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Diceros bicornis (Linnaeus, 1758)"
 ]
}

 The dataset includes 1979 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000800-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t58j3v
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Melinis minutiflora P.Beauv."
 ]
}

 The dataset includes 262 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000801-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8aunv
title: Occurrence Download

description: A dataset containing 5557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-82.13717 2.00653,-56.81183 2.00653,-56.81183 12.13667,-82.13717 12.13667,-82.13717 2.00653))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cistothorus apolinari Chapman, 1914"
 ]
}

 The dataset includes 5557 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000802-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14889627
title: SRA Run Information Dataset
DOI: 10.5281/zenodo.14889628
title: SRA Run Information Dataset
DOI: 10.15468/dl.b9jmad
title: Occurrence Download

description: A dataset containing 7847 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Ambystoma laterale Hallowell, 1856"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2023",
 "DecimalLatitude is greater than or equal to 31.318781918868467",
 "DecimalLatitude is less than or equal to 64.87095083229794",
 "DecimalLongitude is greater than or equal to -93.82750718620308",
 "DecimalLongitude is less than or equal to -45.252481928942615",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7847 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000803-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14740915
title: MMseqs2 virus protein database with ICTV taxonomy

description: MMseqs2 virus protein database decorated with ICTV taxonomy. Proteins originally retrieved from NCBI NR in 2025-01-24.

Steps for reproduction can be found at https://github.com/apcamargo/ictv-mmseqs2-protein-database
DOI: 10.5281/zenodo.14841493
title: MMseqs2 virus protein database with ICTV taxonomy

description: MMseqs2 virus protein database decorated with ICTV taxonomy. Proteins originally retrieved from NCBI NR in 2025-02-08.

Steps for reproduction can be found at https://github.com/apcamargo/ictv-mmseqs2-protein-database
DOI: 10.5281/zenodo.14877743
title: MMseqs2 virus protein database with ICTV taxonomy

description: MMseqs2 virus protein database decorated with ICTV taxonomy. Proteins originally retrieved from NCBI NR in 2025-02-08.

Steps for reproduction can be found at https://github.com/apcamargo/ictv-mmseqs2-protein-database
DOI: 10.5281/zenodo.6574914
title: MMseqs2 virus protein database with ICTV taxonomy

description: MMseqs2 virus protein database decorated with ICTV taxonomy. Proteins originally retrieved from NCBI NR in 2022-05-19.

Steps for reproduction can be found at https://github.com/apcamargo/ictv-mmseqs2-protein-database
DOI: 10.6084/m9.figshare.28438499.v4
title: MajorType

description: MajorType allc files
DOI: 10.15468/dl.bcartv
title: Occurrence Download

description: A dataset containing 2336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Living Specimen, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anabrus simplex Haldeman, 1852"
 ]
}

 The dataset includes 2336 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000805-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69p6nu
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Pennisetum purpureum Schumach."
 ]
}

 The dataset includes 119 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000806-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.