cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30142642.v3
title: Rare variant polygenic risk scores using WES and IMP

description: <br>Rare variant polygenic scores (rvPRS) are being developed to improve phenotype prediction, yet a standardized construction protocol remains unavailable. We sought to establish an optimal rvPRS protocol using whole exome sequencing (WES) and imputed genotype (IMP) data from 502,369 UK Biobank participants and to evaluate its predictive performance compared to common variant PRS (cvPRS). rvPRS models were constructed for 13 binary and 5 quantitative traits using gene-burden and single-SNP associations and assessed via <i>R</i><sup>2</sup>, perSD OR/Beta, NRI, and IDI. Single-SNP-based rvPRS outperformed gene-burden models, and IMP-derived rvPRS generally surpassed WES-derived models. For 6 of 12 validated traits, combined tPRS (cvPRS + rvPRS) improved prediction over cvPRS alone. IMP data also showed a stronger correlation between heritability and rvPRS association strength. This study provides a practical rvPRS protocol applicable across traits and underscores the potential of rare variants to enhance phenotype prediction.
DOI: 10.15468/dl.hrptr9
title: Occurrence Download

description: A dataset containing 2223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urochloa villosa",
 "Continent is Africa"
 ]
}

 The dataset includes 2223 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043845-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3sw5u
title: Occurrence Download

description: A dataset containing 3392 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phanera championii"
 ]
}

 The dataset includes 3392 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043844-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17698938
title: Between Norms and Power: Implicit Geopoliticisation of the Eastern Partnership through Energy

description: Policy documents and political discourse related to the above-mentioned article. Sponsored by the GAČR grant number 25-15980S.
DOI: 10.5281/zenodo.17698937
title: Between Norms and Power: Implicit Geopoliticisation of the Eastern Partnership through Energy

description: Policy documents and political discourse related to the above-mentioned article. Sponsored by the GAČR grant number 25-15980S.
DOI: 10.15468/dl.nqpjzh
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coffea liberica",
 "Year 1945-2025"
 ]
}

 The dataset includes 527 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043846-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.useb2z
title: Occurrence Download

description: A dataset containing 667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-101.994876 34.892706, -102.025383 34.932081, -102.076341 34.932081, -102.045819 34.892706, -101.994876 34.892706))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 667 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043848-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcq4mg
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potamilla antarctica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 139 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043849-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7cwkx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryphalus dilutus"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043850-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17876106
title: A Delphi Study for an AI Framework in Biomedical Education and Academics Researchers

description: Study Context



Type of Study: Delphi method (iterative consensus-building process).

Location: Spain.

Language of Data: Spanish.

Rounds: 2 rounds of questionnaires.




Data Sources





CSV Files from REDCap (3 files):



File 1: Round1 Responses

File 2: Closing remarks from questionnaire 1

File 3: Round 2 ResponsesContains updated ratings after feedback, plus any additional comments.


Common Structure in CSVs:



Columns: participant_id, item_id, score (Likert scale), comment (free text), timestamp.

Rows: Each participant’s response per item.










Codebooks (2 documents):



Round 1 Codebook:Lists all items/questions presented in the first round, their identifiers, and definitions.

Round 2 Codebook:Includes revised items based on Round 1 feedback, plus any new items added.


Codebook Structure:



Columns: item_id, item_text (in Spanish), domain (e.g., clinical, organizational), notes.






Data Characteristics



Quantitative Data:Likert-scale ratings (e.g., 1–9 for importance or agreement).

Qualitative Data:Open-ended comments in Spanish, providing reasoning or suggestions.

Panel Size:Number of participants (from demographic file).

Iteration:Round 2 responses show convergence or divergence compared to Round 1.


study funded by SEDEM (Spanish Society for Medical Education. Grant info: Becas-a-Proyectos-de-Investigacion-SEDEM-2023.pdf)
description: Delphi Study data
DOI: 10.5281/zenodo.17876108
title: A Delphi Study for an AI Framework in Biomedical Education and Academics Researchers

description: Study Context



Type of Study: Delphi method (iterative consensus-building process).

Location: Spain.

Language of Data: Spanish.

Rounds: 2 rounds of questionnaires.




Data Sources





CSV Files from REDCap (3 files):



File 1: Round1 Responses

File 2: Closing remarks from questionnaire 1

File 3: Round 2 ResponsesContains updated ratings after feedback, plus any additional comments.


Common Structure in CSVs:



Columns: participant_id, item_id, score (Likert scale), comment (free text), timestamp.

Rows: Each participant’s response per item.










Codebooks (2 documents):



Round 1 Codebook:Lists all items/questions presented in the first round, their identifiers, and definitions.

Round 2 Codebook:Includes revised items based on Round 1 feedback, plus any new items added.


Codebook Structure:



Columns: item_id, item_text (in Spanish), domain (e.g., clinical, organizational), notes.






Data Characteristics



Quantitative Data:Likert-scale ratings (e.g., 1–9 for importance or agreement).

Qualitative Data:Open-ended comments in Spanish, providing reasoning or suggestions.

Panel Size:Number of participants (from demographic file).

Iteration:Round 2 responses show convergence or divergence compared to Round 1.


study funded by SEDEM (Spanish Society for Medical Education. Grant info: Becas-a-Proyectos-de-Investigacion-SEDEM-2023.pdf)
description: Delphi Study data
DOI: 10.5281/zenodo.17236784
title: Large Multimodal Models for Fine-grained Chinese Unearthed Painted Pottery Recognition

description: Chinese Unearthed Painted Pottery Image Dataset
DOI: 10.5281/zenodo.17244860
title: Large Multimodal Models for Fine-grained Chinese Unearthed Painted Pottery Recognition

description: Chinese Unearthed Painted Pottery Image Dataset
DOI: 10.15468/dl.tte9as
title: Occurrence Download

description: A dataset containing 2545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urochloa xantholeuca",
 "Continent is Africa"
 ]
}

 The dataset includes 2545 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043851-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34973/dt44-x857
title: Pupil dilation offers a time-window on prediction error

description: In the current study, we investigated whether the pupil’s response to decision outcome in the context of associative learning reflects a prediction error defined formally as information gain, while also exploring the time course of this prediction error signal. To do so, we adapted a simple model of trial-by-trial learning of stimulus probabilities based on information theory from previous literature. We analyzed two data sets in which participants performed perceptual decision-making tasks that required associative learning while pupil dilation was recorded. Our findings consistently showed that a significant proportion of variability in the post-feedback pupil response during decision-making can be explained by a formal quantification of information gain shortly after feedback presentation in both task contexts.
DOI: 10.34973/7bbq-wb06
title: Do listeners use speakers' iconic hand gestures to predict upcoming words?

description: EEG experiment that investigated whether listeners use speakers' iconic hand gestures to predict upcoming words. The collection contains EEG data of 40 Dutch participants that watch and listen to a virtual human asking questions, either with a meaningful iconic gesture or with a control hand movement. We also collected memory data, to see how well people remembered the questions, as an attention check. Published in Psychological Science (2025); https://doi.org/10.1177/09567976251331041
DOI: 10.6084/m9.figshare.30846341
title: Online Dataset 1 Datasets of occurrence records after spatial rarefication

description: Online Dataset 1 Datasets of occurrence records after spatial rarefication of species in the seven food chains in Europe.
DOI: 10.6084/m9.figshare.30846341.v1
title: Online Dataset 1 Datasets of occurrence records after spatial rarefication

description: Online Dataset 1 Datasets of occurrence records after spatial rarefication of species in the seven food chains in Europe.
DOI: 10.15468/dl.y2fxjt
title: Occurrence Download

description: A dataset containing 1443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-106.008251 34.631225, -106.048663 34.681897, -106.114195 34.681897, -106.073757 34.631225, -106.008251 34.631225))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1443 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043852-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smydzt
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euchone heteroseta",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043853-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2s92je
title: Occurrence Download

description: A dataset containing 774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((119.03801 29.16669,121.57746 29.16669,121.57746 31.04956,119.03801 31.04956,119.03801 29.16669))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyperaceae"
 ]
}

 The dataset includes 774 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043854-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sym6hj
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Utricularia arenaria",
 "Continent is Africa"
 ]
}

 The dataset includes 397 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043855-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6pfvv
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-106.008185 34.673155, -106.048662 34.723827, -106.114201 34.723827, -106.073699 34.673155, -106.008185 34.673155))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 325 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043858-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17876201
title: Source data for Figure 4 and Supplementary Figures 5-7 of DRAP3R manuscript

description: Source data for Figure 4 and Supplementary Figures 5-7 in the manuscripts entitled Defining expansions and perturbations to the RNA polymerase III transcriptome and epitranscriptome by modified direct RNA nanopore sequencing (DRAP3R).

 

This version was updated with files that were missing from v1.
DOI: 10.5281/zenodo.17856038
title: Source data for Figure 4 and Supplementary Figures 5-7 of DRAP3R manuscript

description: Source data for Figure 4 and Supplementary Figures 5-7 in the manuscripts entitled Defining expansions and perturbations to the RNA polymerase III transcriptome and epitranscriptome by modified direct RNA nanopore sequencing (DRAP3R).

 

This version was updated with files that were missing from v1.
DOI: 10.15468/dl.zq4z2k
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euchone scotiarum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 157 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043859-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fazzu
title: Occurrence Download

description: A dataset containing 12671 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is California State University, Long Beach Mammal specimens (Arctos)"
 ]
}

 The dataset includes 12671 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043860-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4x9jah
title: Occurrence Download

description: A dataset containing 526376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Scombridae",
 "Year 2005-2025"
 ]
}

 The dataset includes 526376 records from 502 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043810-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sjkrtr
title: Occurrence Download

description: A dataset containing 3739252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida, Lindavia intermedia)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3739252 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043812-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46347s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudomyxus capensis (Valenciennes, 1836)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1332 -20.158,25.5395 -23.2724,25.5395 -24.0715,30.5701 -24.0715,30.5701 -20.3186,29.6496 -19.6123,28.947 -19.4003,28.1821 -19.4609,27.6072 -19.7214,27.1332 -20.158))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027883-250525065834625/datasets/export for details.
DOI: 10.15468/dl.wfsfbc
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Chaerephon jobimena Goodman & Cardiff, 2004",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027884-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h4fngu
title: Occurrence Download

description: A dataset listing the 22615 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Xeno-canto - Bird sounds from around the world"
 ]
}

 The dataset's 22615 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027877-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myn432
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudomyxus capensis (Valenciennes, 1836)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.0214 -34.0501,25.5395 -34.1098,25.5395 -32.9007,20.509 -32.9007,20.509 -34.5676,20.524 -34.555,20.8859 -34.5419,20.9606 -34.4398,21.2995 -34.5131,21.5296 -34.4338,21.8696 -34.4439,22.0323 -34.2835,22.221 -34.2428,22.2566 -34.1304,22.5993 -34.0741,22.9652 -34.1674,23.4069 -34.1858,23.4955 -34.0792,23.6056 -34.0563,24.8471 -34.2877,24.9447 -34.2397,25.0214 -34.0501))"
 ]
}

 The dataset includes 96 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027885-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ab4edh
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Chaerephon leucogaster (A.Grandidier, 1869)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 474 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027886-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15611589
title: Dataset: Coexistence of trees, shrubs and grasses creates a complex pic-ture of land surface phenology in tropical dry ecosystems

description: Data files and R script used to analyse vegetation phenology from digital cameras (phenocam) and satellite data across four seasonal dry tropical vegetation sites in Brazil. 

The use of digital cameras to monitor vegetation phenology (phenocams) has become increasingly common as a means of ground-truthing estimates of land surface phenology from Earth observation data. Whilst the relationship between phenocam and Earth Observation-derived indices of land surface phenology has been examined across many temperate land cover types, our understanding of these relationships across the seasonally dry tropics is limited. Here we examined phenological time-series derived from coarse-scale MODIS and fine-scale phenocam data across four seasonally dry tropical sites in Brazil, to determine their correlation, as well as how phenological metrics derived from these time series differed. While MODIS-derived vegetation indices showed seasonal patterns, we found a poor correlation with vegetation indices from phenocams at sites with a high proportion of evergreen vegetation and a poor correlation of MODIS indices with specific vegetation components. The high spatial and temporal resolution of phenocams allowed us to demonstrate differences in phenological metrics among different components of the vegetation which were obscured in the coarser MODIS data. This study highlights the potential of phenocam data to improve our understanding of complex vegetation leaf phenology and its drivers within mixed tree-shrub-grass systems in the seasonally dry tropics. This could help improve the representation of the savanna, grass, and shrubland biomes within terrestrial biosphere models, and lead to better predictions of the impact of climate change on carbon dynamics via shifting vegetation phenology.