cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4609307
title: SIA-BRA: The carbon and nitrogen stable isotope ratios of animals of Brazilian biomes and coastal marine areas

description: SIA-BRA is a compilation of C and N stable isotope ratios of terrestrial and aquatic animals sampled in Brazilian biomes and coastal-marine areas. The SIA-BRA contains isotopic data about non-captive wild specimens, excluding livestock production or laboratory experiments. The SIA-BRA contains a total of 15,993 entries, divided into 10,577 vertebrates and 5,416 invertebrates. Organisms are divided into the following habitats: terrestrial (37% of the total), freshwater (34%), coastal-marine (29%). Eleven Phylum were represented, with a clear dominance of Chordata (66%) and Arthropoda (25%). A total of 40 Classes were included in the SIA-BRA, with a dominance of Teleostei (25%), followed by Mammalia (16%), Insecta (12%), Aves (11%), and Reptilia (10%). Finally, SIA-BRA includes 147 Orders, 460 Families, 857 Genera, and 1130 Species. Software format: Data are supplied as delimited text file (.csv).
DOI: 10.3886/e135024v1
title: Filter Bubbles, Echo Chambers and Fake News: How Social Media Conditions Individuals to be Less Critical of Political Misinformation

description: Social media platforms have been found to be the primary gateway through which individuals are exposed to fake news. The algorithmic filter bubbles and echo chambers that have popularized these platforms may also increase exposure to fake news. Because of this, scholars have suggested disrupting the stream of congruent information that filter bubbles and echo chambers produce, as this may reduce the impact and circulation of misinformation. To test this, a survey experiment was conducted via Amazon MTurk. Participants read ten short stories that were either all fake or half real and half fake. These treatment conditions were made up of stories agreeable to the perspective of Democrats, Republicans, or a mix of both. The results show that participants assigned to conditions that were agreeable to their political world view found fake stories more believable compared to participants who received a heterogeneous mix of news stories complementary to both world views. However, this "break up" effect appears confined to Democratic participants; findings indicate that Republicans assigned to filter bubble treatment conditions believed fake news stories at approximately the same rate as their fellow partisans receiving a heterogeneous mix of news items. This suggests that a potential "break up" may only influence more progressive users.<br><br>Data included in this deposit:<br>1. Stata .dta file<br>2. Stata .do file used to generate tables and figures featured in paper<br>3. Treatment .mp4 video used on primed participants
description: Smallest Geographic Unit: State
description: web-based survey;
DOI: 10.18112/openneuro.ds003568.v1.0.0
title: Mood induction in MDD and healthy adolescents
DOI: 10.6084/m9.figshare.13668965
title: Alignments for Phylogenetic Reconstruction

description: ## Alignment files used for phylogenetic reconstruction <br>1) ribo53_supermatrix_trimal.faConcatenated fasta file of 53 ribosomal proteins (with missing data allowed). Poorly aligned regions were removed with trimAl v1.4.rev15 (Capella-Gutiérrez et al., 2009) using the “automated” option<br>2) SingleCore_supermatrix_trimal.faConcatenated fasta file of 155 single-core orthologous proteins. Poorly aligned regions were removed with trimAl v1.4.rev15 using the “automated” option<br><br>Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15):1972-1973 , https://doi.org/10.1093/bioinformatics/btp348<br>
DOI: 10.6084/m9.figshare.13668965.v1
title: Alignments for Phylogenetic Reconstruction

description: ## Alignment files used for phylogenetic reconstruction <br>1) ribo53_supermatrix_trimal.faConcatenated fasta file of 53 ribosomal proteins (with missing data allowed). Poorly aligned regions were removed with trimAl v1.4.rev15 (Capella-Gutiérrez et al., 2009) using the “automated” option<br>2) SingleCore_supermatrix_trimal.faConcatenated fasta file of 155 single-core orthologous proteins. Poorly aligned regions were removed with trimAl v1.4.rev15 using the “automated” option<br><br>Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15):1972-1973 , https://doi.org/10.1093/bioinformatics/btp348<br>
DOI: 10.5281/zenodo.4608727
title: SCOPe 2.04-stable dataset

description: This is the complete set of data files released with SCOPe 2.04-stable. All SCOPe data are described in the publications, available here: https://scop.berkeley.edu/references/ver=2.04. Full documentation for SCOPe is available on the SCOPe website, https://scop.berkeley.edu. Parseable files are described here: https://scop.berkeley.edu/help/ver=2.04#parseablefiles. The SQL tables are documented here: https://scop.berkeley.edu/downloads/schema/2.04/
DOI: 10.5281/zenodo.4608726
title: SCOPe 2.04-stable dataset

description: This is the complete set of data files released with SCOPe 2.04-stable. All SCOPe data are described in the publications, available here: https://scop.berkeley.edu/references/ver=2.04. Full documentation for SCOPe is available on the SCOPe website, https://scop.berkeley.edu. Parseable files are described here: https://scop.berkeley.edu/help/ver=2.04#parseablefiles. The SQL tables are documented here: https://scop.berkeley.edu/downloads/schema/2.04/
DOI: 10.3886/e117422v1-81443
title: Code for: The Impact of Paid Maternity Leave on Maternal Health

description: We examine the impact of the introduction of paid maternity leave in Norway in 1977 on maternal health in the medium- and long-term. Using administrative data combined with survey data on the health of women around age 40, we find the reform improved a range of maternal health outcomes, including BMI, blood pressure, pain, and mental health. The reform also increased health-promoting behaviors, such as exercise and not smoking. The effects were larger for first-time and low-resource mothers and women who would have taken little unpaid leave in the absence of the reform.
DOI: 10.6084/m9.figshare.12765671
title: Seasonal Dynamics Data

description: # season_3_wth_colony.csv - read me <br> Date - date colony was sampled for Arsenophonus Month - sampling month Arse_status - the Arsenophonus status of the colony (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0) Colony ID - colony identifier Apiary - apiary identifier (multiple colonies occur within a single apiary) County - UK county region where colony is located
DOI: 10.6084/m9.figshare.12765671.v1
title: Seasonal Dynamics Data

description: # season_3_wth_colony.csv - read me <br> Date - date colony was sampled for Arsenophonus Month - sampling month Arse_status - the Arsenophonus status of the colony (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0) Colony ID - colony identifier Apiary - apiary identifier (multiple colonies occur within a single apiary) County - UK county region where colony is located
DOI: 10.6084/m9.figshare.14226479
title: 19510972.fastq.gz

description: WGA of canine stool microbiome
DOI: 10.6084/m9.figshare.14226482
title: 19510996.fastq.gz

description: WGA of canine stool microbiome
DOI: 10.6084/m9.figshare.14226470
title: 19510934.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226479.v1
title: 19510972.fastq.gz

description: WGA of canine stool microbiome
DOI: 10.6084/m9.figshare.14226470.v1
title: 19510934.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226473
title: 19510965.fastq.gz

description: WGA of canine stool microbiome
DOI: 10.6084/m9.figshare.14226425
title: 19510910.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226425.v1
title: 19510910.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226473.v1
title: 19510965.fastq.gz

description: WGA of canine stool microbiome
DOI: 10.6084/m9.figshare.14226371
title: 19510774.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226416
title: 19510903.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226371.v1
title: 19510774.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.14226416.v1
title: 19510903.fastq.gz

description: WGS of canine stool microbiome
DOI: 10.6084/m9.figshare.12765599.v1
title: Persistence in the Lab Data

description: # lab_persistence_deposit.csv - readme <br> Time_point - the time point an individuals Arsenophonus status was tested. Note, for TP_1 (time point 1, day 0) bees in “control” group mirror results from bees in “Test” group, however this is by proxy as leg snips were not performed on controls.<br> Colony - colony source of bees “Beb” = colony A, “Ness’ = colony B, ‘Liv” = negative control colony<br> Pot - unique identifier for each pot<br> Bee_id - unique identified for each individual<br> Treatment - “Test” = individuals belonging to the group that had a leg snip to determine Arsenophonus status prior to experiment, “Control” = indivduals from the same source as the ’Test’ bees, but that were not subjected to a leg snip i.e. this is a control to ensure the leg snip does not affect result, “Neg_control” = bees stemming from colony with no evidence of Arsenophonus association<br> Arse_status - the Arsenophonus status of the individual (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0)<br>
DOI: 10.6084/m9.figshare.12765599
title: Persistence in the Lab Data

description: # lab_persistence_deposit.csv - readme <br> Time_point - the time point an individuals Arsenophonus status was tested. Note, for TP_1 (time point 1, day 0) bees in “control” group mirror results from bees in “Test” group, however this is by proxy as leg snips were not performed on controls.<br> Colony - colony source of bees “Beb” = colony A, “Ness’ = colony B, ‘Liv” = negative control colony<br> Pot - unique identifier for each pot<br> Bee_id - unique identified for each individual<br> Treatment - “Test” = individuals belonging to the group that had a leg snip to determine Arsenophonus status prior to experiment, “Control” = indivduals from the same source as the ’Test’ bees, but that were not subjected to a leg snip i.e. this is a control to ensure the leg snip does not affect result, “Neg_control” = bees stemming from colony with no evidence of Arsenophonus association<br> Arse_status - the Arsenophonus status of the individual (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0)<br>
DOI: 10.5517/ccdc.csd.cc24tf9q
title: CCDC 1990643: Experimental Crystal Structure Determination

description: Related Article: Shivani Sharma, Sumanta Let, Aamod V. Desai, Subhajit Dutta, Gopalsamy Karuppasamy, Mandar M. Shirolkar, Ravichandar Babarao, Sujit K. Ghosh|2021|J.Mater.Chem.A|9|6499|doi:10.1039/D0TA04898D
DOI: 10.5517/ccdc.csd.cc26hp7n
title: CCDC 2040861: Experimental Crystal Structure Determination

description: Related Article: Hong-Kun Liu, Yi-Fei Lei, Peng-Ju Tian, Hui Wang, Xin Zhao, Zhan-Ting Li, Dan-Wei Zhang|2021|J.Mater.Chem.A|9|6361|doi:10.1039/D0TA12267J
DOI: 10.5517/ccdc.csd.cc268p8g
title: CCDC 2034135: Experimental Crystal Structure Determination

description: Related Article: Na Liu, Doudou Liu, Bo Liu, Hao Zhang, Dongmei Cui|2021|Polym.Chem.|12|1518|doi:10.1039/D0PY01397H
DOI: 10.5517/ccdc.csd.cc268p7f
title: CCDC 2034134: Experimental Crystal Structure Determination

description: Related Article: Na Liu, Doudou Liu, Bo Liu, Hao Zhang, Dongmei Cui|2021|Polym.Chem.|12|1518|doi:10.1039/D0PY01397H
DOI: 10.5517/ccdc.csd.cc26xwz0
title: CCDC 2053563: Experimental Crystal Structure Determination

description: Related Article: Er-Meng Han, Wei-Dong Yu, Lei-Jiao Li, Xiao-Yi Yi, Jun Yan, Chao Liu|2021|Chem.Commun.|57|2792|doi:10.1039/D1CC00019E
DOI: 10.5517/ccdc.csd.cc26xx02
title: CCDC 2053564: Experimental Crystal Structure Determination

description: Related Article: Er-Meng Han, Wei-Dong Yu, Lei-Jiao Li, Xiao-Yi Yi, Jun Yan, Chao Liu|2021|Chem.Commun.|57|2792|doi:10.1039/D1CC00019E
DOI: 10.5517/ccdc.csd.cc26yv89
title: CCDC 2054471: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.5517/ccdc.csd.cc26yv9b
title: CCDC 2054472: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.5517/ccdc.csd.cc26yvbc
title: CCDC 2054473: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.5517/ccdc.csd.cc26yvcd
title: CCDC 2054474: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.5517/ccdc.csd.cc26yvdf
title: CCDC 2054475: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.5517/ccdc.csd.cc26yvfg
title: CCDC 2054476: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.5517/ccdc.csd.cc26yvgh
title: CCDC 2054477: Experimental Crystal Structure Determination

description: Related Article: Qiu Sun, Constantin G. Daniliuc, Gerald Kehr, Gerhard Erker|2021|Dalton Trans.|50|3523|doi:10.1039/D1DT00459J
DOI: 10.6084/m9.figshare.12567998
title: Overwinter Loss Data

description: # overwinter_loss - readme <br> (each row refers to a pooled sample of 3 honey bee workers screened for Arsenophonus) <br> period - the period in which the colony was sampled (i.e. before winter = “autumn”, after winter = “spring”) <br> colony_ID - colony identifier for reference <br> location - the UK county region colony located in <br> original_grouping - the group colony binned into based on its before winter Arsenophonus status (i.e. if colony tested positive before winter = “group_a”, if colony tested negative before winter = “group_b”) <br> arse_status - the Arsenophonus status of the pooled sample (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0) <br> <br> ** note - spring data entries are missing for colony IDs = A12 and A14, as these colonies did not survive the winter **
DOI: 10.6084/m9.figshare.12567998.v1
title: Overwinter Loss Data

description: # overwinter_loss - readme <br> (each row refers to a pooled sample of 3 honey bee workers screened for Arsenophonus) <br> period - the period in which the colony was sampled (i.e. before winter = “autumn”, after winter = “spring”) <br> colony_ID - colony identifier for reference <br> location - the UK county region colony located in <br> original_grouping - the group colony binned into based on its before winter Arsenophonus status (i.e. if colony tested positive before winter = “group_a”, if colony tested negative before winter = “group_b”) <br> arse_status - the Arsenophonus status of the pooled sample (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0) <br> <br> ** note - spring data entries are missing for colony IDs = A12 and A14, as these colonies did not survive the winter **
DOI: 10.6084/m9.figshare.12765884
title: Assessment of Heritability Data

description: # VT_lifestage_deposit - readme<br>Lifestage - lifestage of honey bee tested for ArsenophonusArsenophonus_status - the Arsenophonus status of the lifestage (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0)
DOI: 10.6084/m9.figshare.12765884.v2
title: Assessment of Heritability Data

description: # VT_lifestage_deposit - readme<br>Lifestage - lifestage of honey bee tested for ArsenophonusArsenophonus_status - the Arsenophonus status of the lifestage (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0)
DOI: 10.6084/m9.figshare.12765884.v1
title: Assessment of Heritability Data

description: # VT_lifestage_deposit - readme<br>Lifestage - lifestage of honey bee tested for ArsenophonusArsenophonus_status - the Arsenophonus status of the lifestage (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0)
DOI: 10.6084/m9.figshare.12568013
title: Social (HT) Transmission Data

description: <br> # HT_transmission_deposit.csv - readme <br> Treatment - transmission tested using infected donor bees = "Test", negative control transmission test using uninfected donor bees = "Neg_control"<br> Transmission - experimental social condition for transmission (general contact = “Gencon”, trophallaxis = “Trophall”) <br> Colony - source colony <br> Pot - pot unique identifier <br> Status - whether the individual was a donor bee (“Worker”) that started the experiment infected, or a recipient bee (“NEW”) which started the experiment uninfected <br> Arse - the Arsenophonus status of the individual (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0) <br> Fate - the fate of individual during the transmission experiment (i.e. individual remained alive throughout = “Alive”, individual died during the experiment = “Dead”) <br>
DOI: 10.6084/m9.figshare.12568013.v1
title: Social (HT) Transmission Data

description: <br> # HT_transmission_deposit.csv - readme <br> Treatment - transmission tested using infected donor bees = "Test", negative control transmission test using uninfected donor bees = "Neg_control"<br> Transmission - experimental social condition for transmission (general contact = “Gencon”, trophallaxis = “Trophall”) <br> Colony - source colony <br> Pot - pot unique identifier <br> Status - whether the individual was a donor bee (“Worker”) that started the experiment infected, or a recipient bee (“NEW”) which started the experiment uninfected <br> Arse - the Arsenophonus status of the individual (i.e. Arsenophonus positive = 1, Arsenophonus negative = 0) <br> Fate - the fate of individual during the transmission experiment (i.e. individual remained alive throughout = “Alive”, individual died during the experiment = “Dead”) <br>
DOI: 10.6084/m9.figshare.12719762
title: Phylogenomic Analysis

description: Supplementary files relevant for the phylogenomic analysis of <i>Arsenophonus</i> from the Western honey bee (<i>Apis mellifera</i>) <br>ribo53_tr_concatenated_21Apr2020.phy – concatenated alignment used for the phylogenomic analysis of <i>Arsenophonus</i> from <i>Apis mellifera</i> Phylobayes_run_summary.pdf - run summary from Phylobayes used in the phylogenomic analysis of <i>Arsenophonus</i> from <i>Apis mellifera</i><br>
DOI: 10.15785/sbgrid/821
title: X-Ray Diffraction data from Dihydrofolate reductase, source of 7LVC structure

description: E. coli DHFR by Native Mn,P,S-SAD at Room Temperature
description: This data was collected in three passes on a single crystal with the Pilatus detector raised by two panels for the second and third pass. This altered the beam center from that reported in the image headers and introduced a shadow on the detector. For data reduction, the beam center should be set to (290.5, 225.2), and the pixel mask provided in the "Processing Bundle" should be used. The experiment was conducted at 6.5 keV to improve the anomalous signal, but this introduced an additional harmonic in the incident X-ray beam. The resulting secondary diffraction pattern is only observed at low resolution, and was excluded from DIALS spot finding, indexing, and geometry refinement by setting d_max to 6 angstroms. All passes were processed separately in DIALS and merged together in AIMLESS to yield the final merged intensities.
DOI: 10.5281/zenodo.4609320
title: Alignments used in:"Hail to the Red King: evolutionary consequences of a mutualistic lifestyle in genomes of lichenized fungi"

description: Coevolution can substantially shape the evolution of organisms involved in intimate ecological connections that range from antagonistic to mutualistic relationships. The Red Queen dynamic, which expects faster evolution for interacting organisms, was often brought into play for antagonistic relationships (e.g., host-parasite interactions). However, the coevolutionary effects of mutualistic interactions, which predicted slower evolution for interacting organism (Red King dynamic), were investigated to a lesser extent and lacked empirical evidence. Lichens are a stable, mutualistic relationship of fungi and cyanobacteria and/or algae, which originated several times independently during the evolution of Fungi. Therefore, lichens represent a suitable, replicable system to investigate the coevolutionary effect of mutualism on the fungal genome. We measured substitution rates and selective pressure of about 2000 protein-coding genes (plus the rDNA region) in closely related lineages of lichenized and non-lichenized fungi. Our results show that independent lichenized clades are characterized by significantly slower substitution rates for both synonymous and non-synonymous sites, as predicted by the Red King dynamic for mutualistic relationships. None of these genes indicated that selective pressure is acting on lichenized fungi. Therefore, we hypothesize that this evolutionary pattern is rather connected to the lichen life cycle (longer generation time of lichenized fungi) than a result of different selection strength on lichen genes. This first empirical evidence provides an important insight on how biotic cooperative interactions are able to shape the evolution of symbiotic organisms.
description: {"references": ["Hail to the Red King: evolutionary consequences of a mutualistic lifestyle in genomes of lichenized fungi"]}
DOI: 10.5281/zenodo.4609319
title: Alignments used in:"Hail to the Red King: evolutionary consequences of a mutualistic lifestyle in genomes of lichenized fungi"

description: Coevolution can substantially shape the evolution of organisms involved in intimate ecological connections that range from antagonistic to mutualistic relationships. The Red Queen dynamic, which expects faster evolution for interacting organisms, was often brought into play for antagonistic relationships (e.g., host-parasite interactions). However, the coevolutionary effects of mutualistic interactions, which predicted slower evolution for interacting organism (Red King dynamic), were investigated to a lesser extent and lacked empirical evidence. Lichens are a stable, mutualistic relationship of fungi and cyanobacteria and/or algae, which originated several times independently during the evolution of Fungi. Therefore, lichens represent a suitable, replicable system to investigate the coevolutionary effect of mutualism on the fungal genome. We measured substitution rates and selective pressure of about 2000 protein-coding genes (plus the rDNA region) in closely related lineages of lichenized and non-lichenized fungi. Our results show that independent lichenized clades are characterized by significantly slower substitution rates for both synonymous and non-synonymous sites, as predicted by the Red King dynamic for mutualistic relationships. None of these genes indicated that selective pressure is acting on lichenized fungi. Therefore, we hypothesize that this evolutionary pattern is rather connected to the lichen life cycle (longer generation time of lichenized fungi) than a result of different selection strength on lichen genes. This first empirical evidence provides an important insight on how biotic cooperative interactions are able to shape the evolution of symbiotic organisms.
description: {"references": ["Hail to the Red King: evolutionary consequences of a mutualistic lifestyle in genomes of lichenized fungi"]}
DOI: 10.18112/openneuro.ds003568.v1.0.1
title: Mood induction in MDD and healthy adolescents