cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10697565
title: Dataset Course research infrastructure data management

description: This dataset has been published to complete an assigment for WS2 ritrainplus
DOI: 10.6084/m9.figshare.25274011
title: Research Data.xlsx

description: There are three sets of data in the dataset, which are the data of niche online community, mainstream online community and pre-test.In the demographic data, the "frequency" represents "how often do you use that niche online community?",uses seven-level likert scale, from completely disagree to completely agree, and other items like gender, age and other serial numbers can be seen in Table I.In the data,"UI" represents user interaction,"SA" represents customer satisfaction, "PO" represents psychological ownership,"WOM" represents word of mouth, and "KS" represents knowledge sharing, and the specific items can be seen in Table II.
DOI: 10.5281/zenodo.10697541
title: Data From: The complete mitochondrial genome of the basidiomycetous fungus, Tinctoporellus epimiltinus strain RS1

description: Tinctoporellus epimiltinus is well-known as a wood-decaying fungus. In this study, we present the complete mitochondrial genome of this species, identified using next-generation sequencing technology. Our findings reveal that the genome structure is a circular molecule with a size of 51,878 bp. Like most Basidiomycota species, it contains 14 core protein-coding genes, one ribosomal protein (rps3) gene, 26 transfer RNA (tRNA) genes, and small and large ribosomal RNA (rns and rnl) genes. Additionally, we identified seven additional open reading frames (ORFs), including two sequences similar to DNA polymerases, one endonuclease-like sequence, and four hypothetical protein genes. 

1) Sample Figure

The fungal specimen, identified as Tinctoporellus epimiltinus RS1, was isolated into a pure culture using fungal colony purification techniques. The Sample Figure shows the image of the specimen.

2) Mitogenome map of Tinctoporellus epimiltinus strain RS1

The mitogenome map shows the positions of the 14 core protein-coding genes, one ribosomal protein (rps3) gene, 26 transfer RNA (tRNA) genes, and small and large ribosomal RNA (rns and rnl) genes within the mitochondrial genome.

3) Phylogenetic Tree

The phylogenetic tree sheds light on the phylogeny of T.epimiltinus, placing it within the cluster of members of Polyporales. Whithin these species, T. epimiltinus shows a closer relationship with Ganoderma and Trametes.

4) Supplementary Materials Combined

Figure 1

Sequences obtained from Sanger sequencing (936 bp) which cover regions connecting both ends of the single contig of the mitogenome (51878 bp). It is to be noted that the contig utilized here is derived from the CLCbio Genome Workbench since we have two different versions of contigs derived from two different softwares which are basically identical in length and sequences.

Figure 2

The figure shows the alignment of the Sanger sequences to the mitogenome, validating the circularity of the mitogenome.
DOI: 10.5281/zenodo.10697542
title: Data From: The complete mitochondrial genome of the basidiomycetous fungus, Tinctoporellus epimiltinus strain RS1

description: Tinctoporellus epimiltinus is well-known as a wood-decaying fungus. In this study, we present the complete mitochondrial genome of this species, identified using next-generation sequencing technology. Our findings reveal that the genome structure is a circular molecule with a size of 51,878 bp. Like most Basidiomycota species, it contains 14 core protein-coding genes, one ribosomal protein (rps3) gene, 26 transfer RNA (tRNA) genes, and small and large ribosomal RNA (rns and rnl) genes. Additionally, we identified seven additional open reading frames (ORFs), including two sequences similar to DNA polymerases, one endonuclease-like sequence, and four hypothetical protein genes. 

1) Sample Figure

The fungal specimen, identified as Tinctoporellus epimiltinus RS1, was isolated into a pure culture using fungal colony purification techniques. The Sample Figure shows the image of the specimen.

2) Mitogenome map of Tinctoporellus epimiltinus strain RS1

The mitogenome map shows the positions of the 14 core protein-coding genes, one ribosomal protein (rps3) gene, 26 transfer RNA (tRNA) genes, and small and large ribosomal RNA (rns and rnl) genes within the mitochondrial genome.

3) Phylogenetic Tree

The phylogenetic tree sheds light on the phylogeny of T.epimiltinus, placing it within the cluster of members of Polyporales. Whithin these species, T. epimiltinus shows a closer relationship with Ganoderma and Trametes.

4) Supplementary Materials Combined

Figure 1

Sequences obtained from Sanger sequencing (936 bp) which cover regions connecting both ends of the single contig of the mitogenome (51878 bp). It is to be noted that the contig utilized here is derived from the CLCbio Genome Workbench since we have two different versions of contigs derived from two different softwares which are basically identical in length and sequences.

Figure 2

The figure shows the alignment of the Sanger sequences to the mitogenome, validating the circularity of the mitogenome.
DOI: 10.5281/zenodo.10697569
title: Dataset related to article: WISC-IV INTELLECTUAL PROFILES IN ITALIAN CHILDREN WITH SELF-LIMITED EPILEPSY WITH CENTROTEMPORAL SPIKES

description: clinical data of the series
DOI: 10.5281/zenodo.10697570
title: Dataset related to article: WISC-IV INTELLECTUAL PROFILES IN ITALIAN CHILDREN WITH SELF-LIMITED EPILEPSY WITH CENTROTEMPORAL SPIKES

description: clinical data of the series
DOI: 10.6092/unibo/amsacta/7579
title: Una.Resin, WP2, T2.4: Co-creation workshop on Research Infrastructures and Resources

description: The dataset is related to the Horizon 2020 Una.Resin project Work Package 2, co-creation workshop on Research Infrastructures and Resources – RIRs (Task 2.4).
The workshop “From mapping to co-creation: Towards a Una Europa Strategy and Action plan for sharing RIRs” was held online on the 23rd of June 2022. The aim was to collect inputs and insights from the RIRs experts and academic communities from all the Una Europa universities to develop the strategy and action plan for sharing RIRs across the universities of the Alliance. The workshop was divided into two parts: (i) Presentations session; (ii) Co-creation exercise. The first part was dedicated to the presentations of two relevant RIRs from the Cultural Heritage and the One Health field and the presentation of key results from the WP2 mapping exercise. The second session was dedicated to an in-depth discussion organized in breakout rooms and involving 6 participants (3 from the field of Cultural Heritage and 3 from the field of One Health) from each partner university: University of Edinburgh (UEDIN), University of Helsinki (UH), University of Bologna (UNIBO), Complutense University of Madrid (UCM), Freie Universität Berlin (FUB), Katholieke Universiteit Leuven (KU Leuven), Jagiellonian University (JU), Université Paris 1 Panthéon-Sorbonne (UP1).
A total of 87 people participated in the Presentations session, out of which 62 took part in the Co-creation exercise. During the Co-creation exercise, the results of the mapping exercises were used as driver to stimulate the discussions. In particular, four topics were proposed for the discussion: (i) relevant principles for opening and sharing RIRs across universities; (ii) funding opportunities to stimulate interuniversity cooperation around RIRs; (iii) strengthening skills and knowledge related to RIRs management; (iv) overcoming other barriers to share RIRs. The inputs emerging from the mapping exercises and collected during the co-creation workshop were used by WP2 team as a basis to draft the pillars of the Una Europa strategy and action plan for sharing RIRs and finalize the conceptual framework for WP2 pilot actions on RIRs.
DOI: 10.5066/p9cxdipl
title: Datasets used to map the potentiometric surface, Mississippi River Valley alluvial aquifer, spring 2020

description: A potentiometric-surface map for spring 2020 was created for the Mississippi River Valley alluvial aquifer (MRVA), which was referenced to the North American Vertical Datum of 1988 (NAVD 88), using most of the available groundwater-altitude data from wells and surface-water-altitude data from streamgages. The location and water-level altitude in feet for these wells and streamgages in spring 2020 are provided in this data release. The interpreted contours and raster of the potentiometric surface are also provided in this data release and in the associated report titled &amp;amp;quot;Potentiometric surface, Mississippi River Valley alluvial aquifer, spring 2020&amp;amp;quot; and available at http://dx.doi.org/10.3133/sim3478/.
DOI: 10.13120/9fze-dx87
title: The eastern Alps earthquake catalogue (1977-2022)

description: Earthquake catalogue
DOI: 10.3886/e195744v1-146447
title: Data and Code for: Migration and Innovation: Learning from Patent and Inventor Data

description: Research on
international migration and innovation relies heavily on inventor and patent
data, with “migrant inventors” attracting a great deal of attention, especially
for what concerns their role in easing the international transfer of knowledge.
This hides the fact that many of them move to their host country before
starting their inventive career or even before completing their education. We
discuss the conceptual and practical difficulties that stand in the way of investigating
other likely channels of influence of inventor’s migration on innovation,
namely the easing of skill shortages and the increase of variety in inventive
teams, firms, and location.
description: Inventors (and their patents) in different countries.
DOI: 10.21430/m3e26qo4d7
title: Biomarkers for PTLD in Children (CTOTC-06)

description: Solid organ transplantation is an important therapeutic option for children with a variety of end stage diseases. However, the same immunosuppressive medications that are required to prevent the child's immune system from attacking and rejecting the transplanted organ can predispose these individuals to developing a very serious cancer that is linked to Epstein-Barr virus (EBV).
DOI: 10.21430/m3d8hu5m98
title: Study to Evaluate Safety, Immunogenicity and Efficacy of PfSPZ Vaccine in HIV Negative and HIV Positive Tanzanian Adults (BSPZV3a)

description: This is a randomized, double-blind, placebo-controlled trial to evaluate safety and tolerability of PfSPZ Vaccine administered as five doses of 9.0x10^5 PfSPZ or normal saline at 0, +2, +4, +6 and +28 days to healthy HIV negative adult volunteers and healthy HIV positive volunteers in Tanzania.
DOI: 10.21430/m3bftn6rvw
title: HTP proteomics, DIA

description: DIA-PASEF MS data at 100SPD and 60SPD for the IMPACC phase 1
DOI: 10.21430/m3eqnsm26n
title: Immune characterization of lung tumors by flow cytometry

description: Characterization of tumor immune compartment in an endogenous mouse model of lung adenocarcinoma after chronic bacterial instillation
DOI: 10.21430/m37gakh32a
title: Kinetics and durability of humoral responses to SARS-CoV-2 infection and vaccination

description: Using the PARIS longitudinal cohort, the authors determined the kinetics of antibody responses to spike protein after infections, during the primary immunization series, during monovalent and bivalent booster vaccination as well as during breakthrough infections.
DOI: 10.21430/m37fgqmvh3
title: Mycobacterium tuberculosis-specific antibodies detect progression to active tuberculosis in South African adolescents

description: This study follows two separate cohorts of South African Adolescents (ACS and GC6), whom both have serum extracted from them at multiple different visits. That serum is then run on multiple systems serologies assays: Antibody Dependent Functional Profiling (ADNP: Antibody Dependent Neutrophil Phagocytosis, and ADCP: Antibody Dependent Cellular Phagocytosis), along with a Titer Assay for many different Antigens/Lectins (IgA1, IgA2, IgG, IgG1, IgG2, IgG3, IgG4, IgM, RCA, and SNA) and FC Receptor Binding assay on different receptors (R2A, R2B, R3A, R3B).
DOI: 10.21430/m3xczxyj29
title: A next-generation intranasal trivalent MMS vaccine induces durable and broad protection against SARS-CoV-2 variants of concern

description: To develop a mucosal SARS-CoV-2 vaccine that can induce broad, durable protection, by expressing the six-proline-stabilized prefusion spikes from three diverse SARS-CoV-2 strains in the MeV, MuV-JL1, and MuV-JL2 vaccine strains from MMR.
DOI: 10.21430/m3rqbc30kw
title: Geographically skewed recruitment and COVID-19 seroprevalence estimates: a cross-sectional serosurveillance study and mathematical modelling analysis

description: To understand and quantify how geographically skewed recruitment influences SARS-CoV-2 seroprevalence estimates obtained via convenience sampling.
DOI: 10.21430/m3bgkxjrwy
title: Differences in SARS-CoV-2 Vaccine Response Dynamics Between Class-I- and Class-II-Specific T-Cell Receptors in Inflammatory Bowel Disease

description: To examine differences in SARS-CoV-2 Vaccine Response Dynamics Between Class-I- and Class-II-Specific T-Cell Receptors of immuno-compromised inflammatory bowel disease (IBD) patients.
DOI: 10.21430/m3u0j3fokp
title: Temporal variations in the severity of COVID-19 illness by race and ethnicity

description: To understand temporal trends in racial and ethnic variation in severity of COVID-19 illness presenting over time across the United States of America.
DOI: 10.21430/m38yj0kh68
title: Neutralization escape by SARS-CoV-2 Omicron subvariant BA.2.86

description: To evaluate the effect of a bivalent mRNA boost, and neutralization escape of SARS-CoV-2 Omicron subvariant BA.2.86, compared with other currently circulating Omicron variants.
DOI: 10.21430/m3u4lbf0aq
title: Ethnoracial Disparities in SARS-CoV-2 Seroprevalence in a Large Cohort of Individuals in Central North Carolina from April to December 2020

description: To quantify the degree of asymmetric SARS-CoV-2 exposure by ethnoracial grouping in the United States
DOI: 10.21430/m3czv2762j
title: Chronic inflammation, neutrophil activity, and autoreactivity splits long COVID

description: To identify biological signatures of post-acute sequelae of COVID-19 (PASC) with potential diagnostic and therapeutic potential.
DOI: 10.21430/m36x7kdbp4
title: Coronavirus-Specific Antibody Cross Reactivity in Rhesus Macaques Following SARS-CoV-2 Vaccination and Infection

description: To assess the extent to which SARS-CoV-2 vaccination or Infection induces serum responses that cross-react with other coronaviruses in rhesus macaques.
DOI: 10.21430/m3sk8jotuy
title: Enhanced evasion of neutralizing antibody response by Omicron XBB.1.5, CH.1.1, and CA.3.1 variants

description: To investigate neutralization resistance of XBB.1.5, CH.1.1, and CA.3.1 variants after stimulation by three doses of mRNA vaccine or BA.4/5 wave infection.
DOI: 10.21430/m3phnvzfsl
title: Enhanced IgG immune response to COVID-19 vaccination in patients with sickle cell disease

description: To investigate the extent to which the immunocompromised state in sickle cell disease affects antibody responses after COVID-19 vaccination.
DOI: 10.21430/m3ji8v6aui
title: Host range, transmissibility and antigenicity of a pangolin coronavirus

description: To evaluate the pathogenic and cross-species transmission potential of SARS-CoV-2- related coronavirus, pangolin coronavirus (PgCoV).
DOI: 10.21430/m3wv6hxdpc
title: Signatures of AAV-2 immunity are enriched in children with severe acute hepatitis of unknown etiology

description: To identify whether there were differences in the antibody responses of cases of AHUE compared with controls with the goal of identifying a viral cause for acute hepatitis of unknown etiology (AHUE).
DOI: 10.21430/m3wfevlu02
title: Antibody Response to Omicron BA.4-BA.5 Bivalent Booster

description: Here, the authors assess the effect of the new bivalent vaccines on the neutralizing-antibody response.
DOI: 10.21430/m35vaodaq2
title: Antigenic Landscape Analysis of Individuals Vaccinated with a Universal Influenza Virus Vaccine Candidate Reveals Induction of Cross-Subtype Immunity

description: Here, serum samples from a phase I clinical trial (CVIA057, NCT03300050) were analyzed using an influenza virus protein microarray
DOI: 10.21430/m3tx82xynn
title: Engineered Influenza Virus Virions Reveal the Contributions of Non-hemagglutinin Structural Proteins to Vaccine-Mediated Protection

description: The development of improved and universal anti-influenza vaccines would represent a major advance in the protection of human health. In order to facilitate the development of such vaccines, understanding how viral proteins can contribute to protection from disease is critical. Much of the previous work to address these questions relied on reductionist systems (i.e., vaccination with individual proteins or virus- like particles [VLPs] that contain only a few viral proteins); thus, we have an incomplete understanding of how immunity to different subsets of viral proteins contributes to protection. Here, we report the development of a platform in which a single viral protein can be deleted from an authentic viral particle that retains the remaining full complement of structural proteins and viral RNA. As a first study with this system, we chose to delete the major influenza A virus (IAV) antigen, the hemagglutinin (HA) protein, to evaluate how the other components of the viral particle contribute en masse to protection from influenza disease. Our results show that while anti-HA immunity plays a major role in protection from challenge with a vaccine-matched strain, the contributions from other structural proteins were the major drivers of protection against highly antigenically drifted, homosubtypic strains. This work highlights the importance of evaluating the inclusion of non-HA viral proteins in the development of broadly efficacious and long-lasting influenza vaccines.
DOI: 10.5517/ccdc.csd.cc29x5gw
title: CCDC 2142238: Experimental Crystal Structure Determination

description: Related Article: Jijun Chen, Zhen Gao, Tianze Li, Yunbao Ma, Changan Geng, Xiaoyan Huang, Jing Hu, Xuemei Zhang|2024|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29xnrn
title: CCDC 2142712: Experimental Crystal Structure Determination

description: Related Article: Jijun Chen, Zhen Gao, Tianze Li, Yunbao Ma, Changan Geng, Xiaoyan Huang, Jing Hu, Xuemei Zhang|2024|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21900777
title: Performance evaluation of sand dams as a rural rainwater conservation and domestic water supply technology in East-African drylands, a case-study from South-Eastern Kenya

description: Sand dams (SDs) are rainwater harvesting methods in East-African drylands for rural water supplies and small-scale irrigation practices. However, little information exists on their ability to maintain the harvested water in the right quantity and quality. Three SDs were selected from south-eastern Kenya’s semi-arid zone as a case study to evaluate their operational performance. Water and sediment samples were collected and analyzed in both the field and laboratory. Six performance indicators, namely stormwater-capture efficiency (SCE), water-saving efficiency (WSE), volume-based and time-based reliabilities, water demand satisfaction rate (WDSR), water loss percentage, physicochemical water pollution index (WPI) and microbial non-compliance rate (NCR), were computed. Results showed that water storage in SDs is quite low and unfit for direct human consumption. In fact, three experimental SDs harvested 7,356 m<sup>3</sup> during the long-rains season (March–May 2018) for an estimated water demand of 8,990 m<sup>3</sup> (June–September). About 4,505 m<sup>3</sup> (61.24%) was lost through evaporation (64.11%) and seepage (35.89%). These SDs exhibited low WDSR (31.72%), inadequate SCE (3.09%), low WSE (30.85%), dismal volume reliability (24.56%), and undependable time reliability (24.91%). Shallow-well water was less polluted than scoop-hole water but both didn’t meet the bacterial water quality standard (0 CFU/100 mL). The former scored a low WPI of 1.86 (<i>reasonably clean</i>) compared to clean water (WPI ≤ 1), while the latter scored a high WPI of 12.91 (<i>considerably polluted</i>). Furthermore, NCRs for total coliforms were 60% in shallow wells and 90.79% in scoop holes. Therefore, this water should be treated and disinfected for domestic use.
DOI: 10.6084/m9.figshare.21900777.v2
title: Performance evaluation of sand dams as a rural rainwater conservation and domestic water supply technology in East-African drylands, a case-study from South-Eastern Kenya

description: Sand dams (SDs) are rainwater harvesting methods in East-African drylands for rural water supplies and small-scale irrigation practices. However, little information exists on their ability to maintain the harvested water in the right quantity and quality. Three SDs were selected from south-eastern Kenya’s semi-arid zone as a case study to evaluate their operational performance. Water and sediment samples were collected and analyzed in both the field and laboratory. Six performance indicators, namely stormwater-capture efficiency (SCE), water-saving efficiency (WSE), volume-based and time-based reliabilities, water demand satisfaction rate (WDSR), water loss percentage, physicochemical water pollution index (WPI) and microbial non-compliance rate (NCR), were computed. Results showed that water storage in SDs is quite low and unfit for direct human consumption. In fact, three experimental SDs harvested 7,356 m<sup>3</sup> during the long-rains season (March–May 2018) for an estimated water demand of 8,990 m<sup>3</sup> (June–September). About 4,505 m<sup>3</sup> (61.24%) was lost through evaporation (64.11%) and seepage (35.89%). These SDs exhibited low WDSR (31.72%), inadequate SCE (3.09%), low WSE (30.85%), dismal volume reliability (24.56%), and undependable time reliability (24.91%). Shallow-well water was less polluted than scoop-hole water but both didn’t meet the bacterial water quality standard (0 CFU/100 mL). The former scored a low WPI of 1.86 (<i>reasonably clean</i>) compared to clean water (WPI ≤ 1), while the latter scored a high WPI of 12.91 (<i>considerably polluted</i>). Furthermore, NCRs for total coliforms were 60% in shallow wells and 90.79% in scoop holes. Therefore, this water should be treated and disinfected for domestic use.