cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14280953
title: Conservation of species-rich subtropical grasslands: traditional management vs. legal conservation requirements in primary and secondary grasslands

description: ABSTRACT Land-use change is the main cause of biodiversity losses, and for grasslands includes changes in management. The last 10 years has seen afforestation of traditionally grazed grasslands increase considerably in the understudied Serra do Sudeste region of the Brazilian Pampa, turning the region into a mosaic of tree plantations, natural ecosystems (partly in conservation areas without grazing management) and other land uses. We evaluated grassland plant community structure and composition in conservation areas considering two distinct types of land-use history and compared them to grasslands under traditional management. The study was carried out at 58 sites. Per site, three plots were established to sample the plant composition of the herbaceous and shrub layers. We used ordination techniques and indicator species analysis to describe patterns of community composition. We recorded a total of 516 species, thus confirming the high biodiversity of the region. We detected differences in vegetation structure and composition between primary and secondary grasslands. Our study emphasizes the need to increase conservation efforts in the region and points out that current conservation approaches should be evaluated critically regarding their effects for biodiversity conservation and that adequate grazing management is key for grassland biodiversity conservation.
DOI: 10.6084/m9.figshare.14280953.v1
title: Conservation of species-rich subtropical grasslands: traditional management vs. legal conservation requirements in primary and secondary grasslands

description: ABSTRACT Land-use change is the main cause of biodiversity losses, and for grasslands includes changes in management. The last 10 years has seen afforestation of traditionally grazed grasslands increase considerably in the understudied Serra do Sudeste region of the Brazilian Pampa, turning the region into a mosaic of tree plantations, natural ecosystems (partly in conservation areas without grazing management) and other land uses. We evaluated grassland plant community structure and composition in conservation areas considering two distinct types of land-use history and compared them to grasslands under traditional management. The study was carried out at 58 sites. Per site, three plots were established to sample the plant composition of the herbaceous and shrub layers. We used ordination techniques and indicator species analysis to describe patterns of community composition. We recorded a total of 516 species, thus confirming the high biodiversity of the region. We detected differences in vegetation structure and composition between primary and secondary grasslands. Our study emphasizes the need to increase conservation efforts in the region and points out that current conservation approaches should be evaluated critically regarding their effects for biodiversity conservation and that adequate grazing management is key for grassland biodiversity conservation.
DOI: 10.17608/k6.auckland.14280203
title: Supplementary data 9. The central proteins are the targets of FDA approved drugs.

description: We used DGIdb to find the draggability of the central proteins. About 46% (N=80 of 173) of the central proteins across all the modules were targeted by FDA approved drugs. The list of central proteins and their drug targets, and the shared central proteins, their target drugs and the disease informations are provided here.
DOI: 10.6084/m9.figshare.14280954
title: Pollen types of Sapindaceae from Brazilian forest fragments: apertural variation

description: ABSTRACT Morphological variations in angiosperm pollen grains may aid in the differentiation of families, genera and species. Sapindaceae pollen morphology holds promise for the recognition of taxa of this cosmopolitan family, which is well distributed in tropical regions and possesses great morphological diversity. This study presents the pollen morphology of 23 native Brazilian species of Sapindaceae from forest fragments in the state of São Paulo, Brazil. The aim was to identify pollen types in order to expand the morphological knowledge of the analyzed species and contribute to the taxonomy and conservation of the family. Pollen grains were acetolysed, measured and photographed using light and scanning electron microscopy. Qualitative data were described for three pollen types, while quantitative data were analyzed by descriptive and multivariate statistics. The pollen grains are monads, isopolar or heteropolar, small to medium in size, peroblate to oblate-spheroidal and with a subcircular to quadrangular amb. Variation in the type of the apertures [3-porate, 3-(4)-colporate, 3-syncolporate or 3-parasyncolporate] allowed the analyzed genera to be separated into three pollen types. Furthermore, differences in ornamentation (psilate, rugulate, striate, microreticulate, reticulate) delimit species within the established pollen types.
DOI: 10.6084/m9.figshare.11265836
title: Functional patterns of tree communities in natural Araucaria forests and old monoculture conifer plantations

description: ABSTRACT A functional perspective of tree communities is helpful for understanding forest dynamics, especially vegetation recovery after other land uses. Knowledge about ecological filters and survival strategies of trees are also important for the restoration of degraded areas. This study aimed to evaluate the functional composition and structure of adult and regenerative components of natural Araucaria forests, Araucaria plantations and plantations of exotic Pinus in subtropical southern Brazil. Differences in functional diversity and functional richness, and in community weighted mean trait values, including leaf traits and reproductive traits, were analyzed. RLQ analysis was used to assess the association between community structure, plant traits and environmental variables. Clear differences were found for most traits and for functional richness for the regenerative component, while the adult component was more similar among forest types. A clear separation in RLQ ordination associated with trait variation, for the adult component but not for regenerative trees, also indicates that communities are becoming functionally more similar with time. Plantations were shown to function as environmental filters by directly influencing species recruitment, richness and functional diversity. We conclude that passive restoration may be the best strategy for restoration of Araucaria forests.
DOI: 10.6084/m9.figshare.11265836.v1
title: Functional patterns of tree communities in natural Araucaria forests and old monoculture conifer plantations

description: ABSTRACT A functional perspective of tree communities is helpful for understanding forest dynamics, especially vegetation recovery after other land uses. Knowledge about ecological filters and survival strategies of trees are also important for the restoration of degraded areas. This study aimed to evaluate the functional composition and structure of adult and regenerative components of natural Araucaria forests, Araucaria plantations and plantations of exotic Pinus in subtropical southern Brazil. Differences in functional diversity and functional richness, and in community weighted mean trait values, including leaf traits and reproductive traits, were analyzed. RLQ analysis was used to assess the association between community structure, plant traits and environmental variables. Clear differences were found for most traits and for functional richness for the regenerative component, while the adult component was more similar among forest types. A clear separation in RLQ ordination associated with trait variation, for the adult component but not for regenerative trees, also indicates that communities are becoming functionally more similar with time. Plantations were shown to function as environmental filters by directly influencing species recruitment, richness and functional diversity. We conclude that passive restoration may be the best strategy for restoration of Araucaria forests.
DOI: 10.6084/m9.figshare.14280957
title: Does an urban environment affect leaf structure of Eugenia uniflora L. (Myrtaceae)?

description: ABSTRACT External factors can interfere with the structure and biological activity of plants. Nevertheless, the susceptibility of plants to specific environmental conditions varies, which raises many questions about the behavior of medicinal plants when grown in urban areas. This study aims to detect possible changes induced by exposure of Eugenia uniflora L. to an urban environment, with emphasis on variation in external and internal leaf structure and differences in the production of its main metabolites. We compared leaves of E. uniflora cultivated in forest and urban sites and analyzed them for structural plasticity and characteristics indicative of stress in the urban environment. The leaves of the urban site revealed necrosis and reddish spots, higher stomatal density, smaller stomata and more numerous crystals and secretory glands, as well as evident storage of starch, lipids, and mucilage. The presence of numerous crystals had a high plasticity index and great potential as anatomical marker for evaluating the effects of the urban environment. Visual symptoms and anatomical changes were efficient at diagnosing stress in E. uniflora, while characteristics of the urban site, such as temperature, heat and pollution, are thought to be responsible for the observed variation and may influence your medicinal characteristic.
DOI: 10.6084/m9.figshare.14280957.v1
title: Does an urban environment affect leaf structure of Eugenia uniflora L. (Myrtaceae)?

description: ABSTRACT External factors can interfere with the structure and biological activity of plants. Nevertheless, the susceptibility of plants to specific environmental conditions varies, which raises many questions about the behavior of medicinal plants when grown in urban areas. This study aims to detect possible changes induced by exposure of Eugenia uniflora L. to an urban environment, with emphasis on variation in external and internal leaf structure and differences in the production of its main metabolites. We compared leaves of E. uniflora cultivated in forest and urban sites and analyzed them for structural plasticity and characteristics indicative of stress in the urban environment. The leaves of the urban site revealed necrosis and reddish spots, higher stomatal density, smaller stomata and more numerous crystals and secretory glands, as well as evident storage of starch, lipids, and mucilage. The presence of numerous crystals had a high plasticity index and great potential as anatomical marker for evaluating the effects of the urban environment. Visual symptoms and anatomical changes were efficient at diagnosing stress in E. uniflora, while characteristics of the urban site, such as temperature, heat and pollution, are thought to be responsible for the observed variation and may influence your medicinal characteristic.
DOI: 10.6084/m9.figshare.14280960
title: Pollen sources used by Frieseomelitta Ihering 1912 (Hymenoptera: Apidae: Meliponini) bees along the course of the Rio Negro, Amazonas, Brazil

description: ABSTRACT Insect pollination has influenced the evolution and diversification of angiosperms. Consequently, knowing plants used as food sources by bees, the most important pollinator group, is the first step toward understanding how their ecological relationships works. Pollen source information is also highly relevant for bee management and associated fruit and seed production. Accordingly, to improve understanding of the trophic ecology of these bees and their relationships with native Amazonian plants the current study identified, quantified and compared pollen stored in nests of Frieseomelitta stingless bees along the Rio Negro, Amazonas, Brazil. A total of 31 pollen pots were sampled and found to contain 65 pollen types distributed across 52 genera and 29 botanical families (predominantly Arecaceae, Araliaceae, Fabaceae and Urticaceae). Euterpe was the commonest pollen type, being present in 32.2 % of the analyzed samples. Although the studied bees were generalists, pollen analysis suggested that different Frieseomelittaspecies may have distinct food preferences. The pollen profile of the studied bees was influenced more by nest location than by species phylogenetic proximity. The current study also provides a list of important plants for native bee management, which could improve beekeeping when grown near managed meliponarine colonies.
DOI: 10.6084/m9.figshare.14280963
title: Soil seed bank in a subtropical grassland under different grazing intensities

description: ABSTRACT Grazing is an important determinant for the composition and structure of grasslands; however, soil seed bank (SSB) response to grazing intensity is poorly investigated. We analyzed SSB richness and density in a subtropical grassland in southern Brazil with different forage offers (low, intermediate, high and very high), that is, contrasting grazing intensities. The SSB was evaluated by the seedling emergence method. We collected ten SSB samples at two layers (0-5 and 5-10 cm) in spring and autumn in each of grazing intensity treatments. We surveyed the established vegetation to assess its similarity with the SSB. Treatment effects were analyzed by Poisson regression while compositional differences were visualized by ordination. We found 103 species in the SSB, of which 71 were also found in established vegetation. We found a positive correlation between SSB density and grazing intensity. High grazing intensity influences patterns of composition and dominance in the SSB, while no strong differences were found among the other treatments. The SSB was characterized by low participation of dominant grasses in the vegetation and the dominance of ruderal species, indicating that recovery from the SSB after total removal of vegetation (severe disturbance) may be limited in grasslands in the region.
DOI: 10.6084/m9.figshare.14280960.v1
title: Pollen sources used by Frieseomelitta Ihering 1912 (Hymenoptera: Apidae: Meliponini) bees along the course of the Rio Negro, Amazonas, Brazil

description: ABSTRACT Insect pollination has influenced the evolution and diversification of angiosperms. Consequently, knowing plants used as food sources by bees, the most important pollinator group, is the first step toward understanding how their ecological relationships works. Pollen source information is also highly relevant for bee management and associated fruit and seed production. Accordingly, to improve understanding of the trophic ecology of these bees and their relationships with native Amazonian plants the current study identified, quantified and compared pollen stored in nests of Frieseomelitta stingless bees along the Rio Negro, Amazonas, Brazil. A total of 31 pollen pots were sampled and found to contain 65 pollen types distributed across 52 genera and 29 botanical families (predominantly Arecaceae, Araliaceae, Fabaceae and Urticaceae). Euterpe was the commonest pollen type, being present in 32.2 % of the analyzed samples. Although the studied bees were generalists, pollen analysis suggested that different Frieseomelittaspecies may have distinct food preferences. The pollen profile of the studied bees was influenced more by nest location than by species phylogenetic proximity. The current study also provides a list of important plants for native bee management, which could improve beekeeping when grown near managed meliponarine colonies.
DOI: 10.6084/m9.figshare.14280963.v1
title: Soil seed bank in a subtropical grassland under different grazing intensities

description: ABSTRACT Grazing is an important determinant for the composition and structure of grasslands; however, soil seed bank (SSB) response to grazing intensity is poorly investigated. We analyzed SSB richness and density in a subtropical grassland in southern Brazil with different forage offers (low, intermediate, high and very high), that is, contrasting grazing intensities. The SSB was evaluated by the seedling emergence method. We collected ten SSB samples at two layers (0-5 and 5-10 cm) in spring and autumn in each of grazing intensity treatments. We surveyed the established vegetation to assess its similarity with the SSB. Treatment effects were analyzed by Poisson regression while compositional differences were visualized by ordination. We found 103 species in the SSB, of which 71 were also found in established vegetation. We found a positive correlation between SSB density and grazing intensity. High grazing intensity influences patterns of composition and dominance in the SSB, while no strong differences were found among the other treatments. The SSB was characterized by low participation of dominant grasses in the vegetation and the dominance of ruderal species, indicating that recovery from the SSB after total removal of vegetation (severe disturbance) may be limited in grasslands in the region.
DOI: 10.6084/m9.figshare.14280965
title: Structural assessment of a population of Anacardium humile subjected to fire during different periods of the year

description: ABSTRACT Understanding how fire affects the plant biota of the Cerrado is essential for formulating conservational strategies. We evaluated the effects of fires during different periods of the year on the populational structure of Anacardium humile. The research was carried out in areas of typical cerrado stricto sensu in the territory of the Kalunga, state of Goiás, Brazil. These areas, which comprise the same population, were submitted to the following treatments: unburned (control), burned in May 2016 (early fire - EF), and burned in September 2016 (late fire - LF). In July 2018, we delimited two contiguous transects of 100 x 20 m, subdivided into 10 plots of 20 x 20 m, in each area. Fire stimulated the development of branches from basal regrowth in EF and LF. No differences were found in height and diameter of individuals among LF, EF, and the control area. Individuals of EF had size patterns similar to the control individuals, indicating a lesser effect of early fire. The greatest differences regarding all significant parameters were found between LF and control individuals. Early prescribed fires, depending on periodicity, may be less harmful to A. humile.
DOI: 10.6084/m9.figshare.14280964
title: Brazilian herbaria: an overview

description: ABSTRACT Herbaria represent irreplaceable repositories of biodiversity and are used to answer questions about conservation, ecology, systematics, and other sciences. In this sense, we characterize the infrastructure, human resources, and idiosyncrasies of Brazilian herbaria. To achieve this goal, curators were sent a structured and standardized questionnaire to gather information about herbaria. The Brazilian Herbaria Network listed 216 active herbaria in the year 2018, of which 139 answered the questionnaire. These herbaria hold 6,741,469 samples in their collections and more than 39,000 type samples. Most herbaria are in federal universities (40.28 %). Only 24 % of the curators considered that their herbarium is valued by their institutions and 52 % indicated inadequate storage areas. Only nine collections have smoke sensors. Our analysis showed that if an herbarium has an institutional policy the curator is 78 % more likely to consider its herbarium valued. Therefore, it is important for all herbaria to institute their policy. These numbers reflect the difficulty in maintaining herbaria, in many cases cared for only by its curator without institutional recognition and support. Despite recent losses in Brazilian natural history collections, herbaria are still threatened by a lack of basic infrastructure.
DOI: 10.6084/m9.figshare.14280965.v1
title: Structural assessment of a population of Anacardium humile subjected to fire during different periods of the year

description: ABSTRACT Understanding how fire affects the plant biota of the Cerrado is essential for formulating conservational strategies. We evaluated the effects of fires during different periods of the year on the populational structure of Anacardium humile. The research was carried out in areas of typical cerrado stricto sensu in the territory of the Kalunga, state of Goiás, Brazil. These areas, which comprise the same population, were submitted to the following treatments: unburned (control), burned in May 2016 (early fire - EF), and burned in September 2016 (late fire - LF). In July 2018, we delimited two contiguous transects of 100 x 20 m, subdivided into 10 plots of 20 x 20 m, in each area. Fire stimulated the development of branches from basal regrowth in EF and LF. No differences were found in height and diameter of individuals among LF, EF, and the control area. Individuals of EF had size patterns similar to the control individuals, indicating a lesser effect of early fire. The greatest differences regarding all significant parameters were found between LF and control individuals. Early prescribed fires, depending on periodicity, may be less harmful to A. humile.
DOI: 10.6084/m9.figshare.14280964.v1
title: Brazilian herbaria: an overview

description: ABSTRACT Herbaria represent irreplaceable repositories of biodiversity and are used to answer questions about conservation, ecology, systematics, and other sciences. In this sense, we characterize the infrastructure, human resources, and idiosyncrasies of Brazilian herbaria. To achieve this goal, curators were sent a structured and standardized questionnaire to gather information about herbaria. The Brazilian Herbaria Network listed 216 active herbaria in the year 2018, of which 139 answered the questionnaire. These herbaria hold 6,741,469 samples in their collections and more than 39,000 type samples. Most herbaria are in federal universities (40.28 %). Only 24 % of the curators considered that their herbarium is valued by their institutions and 52 % indicated inadequate storage areas. Only nine collections have smoke sensors. Our analysis showed that if an herbarium has an institutional policy the curator is 78 % more likely to consider its herbarium valued. Therefore, it is important for all herbaria to institute their policy. These numbers reflect the difficulty in maintaining herbaria, in many cases cared for only by its curator without institutional recognition and support. Despite recent losses in Brazilian natural history collections, herbaria are still threatened by a lack of basic infrastructure.
DOI: 10.6084/m9.figshare.14280968
title: Fruits of neotropical species of the tribe Malveae (Malvoideae - Malvaceae): macro- and micromorphology

description: ABSTRACT Fruit morphology of the tribe Malveae has been discussed since the first taxonomic classifications of Malvaceae. The fruits are schizocarps, with some genera possessing an endoglossum. Besides morphological variation in the endoglossum, other differences include the number seeds per locule and ornamentation of the exocarp. An in-depth study of the fruit morphology of Malveae is essential to gain insight into the relationships among taxa of the tribe. Therefore, the present study aimed to describe the fruit morphology of Malveae, including micromorphology, variation in endoglossum structure and arrangement of seeds in the locule, to comprehensively evaluate the systematic relationships among its contained taxa. The results indicate morphological variation in fruit of various genera with regard to the number of mericarps, degree of dehiscence, relationship between calyx and fruit and their relative sizes, number and morphology of spines, number of seeds per locule, presence or absence of an endoglossum, presence and types of trichomes in exocarp and endocarp, and shape and presence of trichomes in the testa of seeds. Despite the morphological proximity of taxa, there are distinct combinations of characters that define some genera, and when one or more characters overlap, joint analysis makes it possible to clarify existing relationships.