cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7k47r34kmj
title: Dehydrozingerone ameliorate renal structures compromised in diabetic nephropathy

description: Kidney structural integrity is critical for bodily excretory mechanism. Diabetes has been considered as one of the major risk factors for chronic kidney disease, but the underlying mechanism remains elusive. The present study investigates the transcriptomic and proteomic profiling of long-term impact of high-fat diet on renal tissue in mice and role of dehydrozingerone (DH) in reinstating the normal kidney function. Animals were divided into four groups- healthy (NCD+Veh), diabetic (HFD-STZ), healthy+DH (NCD+Veh+DH) and treatment (HFD-STZ+DH). 65th days of HFD-fed C57BL/6 mice developed diabetes and kidney dysfunction evident by albuminuria, proteinuria, and glucotoxicity with accumulation of glucose, triglyceride, cholesterol, and total protein in blood serum. The HFD-fed kidney showed renal injuries, including prominent defects in the glomerular filtration system by downregulation of proteins involved in transport, metabolic process, energy production, anti-oxidation, etc. Downregulation of lipid metabolism is most impacted metabolic process under diabetic condition. Downregulation of transport proteins mainly impact the functioning of podocytes, cell adhesion and cytoskeletal rearrangement. HFD feeding also increased oxidative stress and induced mitochondrial dysfunction, and thereby activating the pro-apoptotic pathway. Both transcriptomic and proteomic studies revealed the potential of Dehydrozingerone in attenuating the diabetic condition by positively regulating transport system, mitochondrial function, lipid metabolism, DNA damage and epigenetic alteration, and oxidative stress, which reinstate the kidney function.
DOI: 10.17632/9zjdm9mj8j
title: Employee Competencies and Compensation Strategies as Company's Strategic Effort to Escalate Employee Performance

description: Abstract: The results of the study indicate that employees were not  satisfied  with  their  work  discipline,  competence,  and empowerment.  Thus,  job  satisfaction  cannot  be  compared  to employee  performance.  Applying  a  survey  method  to  reveal  the perceptions of 376 employees of the Ministry of Agrarian Affairs and Spatial Planning/National Land Agency of the  Republic  of Indonesia, starting from August 2016 - August 2017, this study reveals  work  discipline,  competence,  and  empowerment  had implications  for  job  satisfaction  in  improving  employee performance.  Data  were  analysed  descriptively  (weighted  mean score)  and  inferentially  (Structural  Equation  Modeling).  The results  showed  that:  (1)  Work  discipline,  competence, empowerment,  job  satisfaction  and  performance  of  the  civil servants  at  the  Ministry  of  Agrarian  and  Spatial Planning/National  Land  Agency  of  the  Republic  of  Indonesia were in “good” category, albeit not optimal; (2) Work discipline, competence, and empowerment simultaneously and partially had significant effect on civil servants’ job satisfaction at the Ministry of Agrarian Affairs and Spatial Planning/National Land Agency of  the  Republic  of  Indonesia;  and  (3)  Work  discipline, competence,  and  empowerment  both  directly  and  indirectly (through Job Satisfaction) were simultaneously and significantly related  to  the  performance  of  civil  servants  of  the  Ministry  of Agrarian Affairs and Spatial Planning/National Land Agency of the Republic of Indonesia. 

Keywords : Competence, employee performance, empowerment, job satisfaction, work discipline
DOI: 10.17632/tbpkxxp9b7
title: Raw count data of the proximal colon microbiome from parasite resistant and susceptible sheep

description: Applied breeding for host resistance to gastrointestinal nematodes represents a cost-effective strategy for parasitic control. While resistance is under moderate genetic influences, gut microbial components involved in the development of resistance or susceptibility remain largely unknown. Here we characterize the structure and metabolic potential of the proximal colon microbiota in unique ovine populations bred for resistance and susceptibility using a full-length 16S rRNA gene sequencing-based microbiome approach. The resistant lambs produced significantly fewer parasite eggs than susceptible animals grazing on the same pasture. Further, the resistant lambs displayed a 12.8-fold reduction in worm establishment in response to a Trichostrongylus colubriformis challenge infection (P = 1.12 x 10-14; N = 20 per group). Among 32 bacterial species or strains displaying a significant difference in relative abundance between the resistant and susceptible group, E. coli was more abundant in susceptible lambs. E. coli was also ranked as the most important species in distinguishing the resistant and susceptible status. Moreover, a microbial signature or balance consisting of E. coli (Numerator) and Parabacteroides distasonis and Bacteroides thetaiotaomicron (Denominator) predicted the resistance status with high accuracy. The metagenome function prediction also revealed that several pathways related to infectious diseases, such as Shigellosis and pathogenic E. coli infection, were significantly altered between the two phenotypes. Our findings demonstrated that microbial signatures with a high predictive power for the resistance status can be developed as biomarkers to facilitate the selection for host resistance in sheep.
DOI: 10.17632/vxgwv9f8py
title: Electronic structure data at ground and excited state of the geometries of organic photovoltaic materials.

description: The data show a collection of electronic structure properties of a series of 33 OPV materials with potential to be implemented as a component in a solar cell device. The data was obtained considering ground state geometries (lowest energy geometries), and also excited states at the Density Functional Theory (DFT) level by using the PBE/def2-TZVP methodology. Such data is directly related to the research papers: “The role of photoisomerization in the opto-electronic properties of organic photovoltaic materials: A DFT study” [1]. [1] C. Delesma, C. Amador-Bedolla, M. Robles, J. Muñiz, Photoisomerization and its effect in the opto-electronic properties of organic photovoltaic materials: A quantum chemistry study, Journal of Photochemistry and Photobiology A: Chemistry (2021) 409, 113155.
DOI: 10.57912/23561643.v1
title: Complete Economic and Demographic Data Source (CEDDS) 2023

description: The Woods & Poole Economics, Inc. 2023 Complete Economic and Demographic Data Source contains some of the Woods & Poole Economics, Inc. regional data and projections for the U.S. and all regions, states, Combined Statistical Areas (CSAs), Metropolitan Statistical Areas (MSAs), Micropolitan Statistical Areas (MICROs), Metropolitan Divisions (MDIVs), Designated Market Areas (DMAs), and counties for 1969 or 1970 or 1990 through 2060. The remainder of this introduction contains the technical description of the and Download. Chapter 1 is an overview of the 2023 projections. Please read "Technical Description of the 2023 Regional Projections and Database" (Chapter 2) for an explanation of data sources, data definitions, and forecast methods. Appendices to Chapter 2 define the geographic areas used by Woods & Poole.
DOI: 10.6084/m9.figshare.11604708.v1
title: fashion_mnist.zip

description: A learning curve dataset on OpenML data providing many statistics such as loss, accuracy, configuration, global and loca gradient statistics.<br>
DOI: 10.6084/m9.figshare.12805121.v2
title: c1471 clone 1 5weeks s3 r1 001 .bamBAM files after alignmentRaw data

description: Raw data after alignment of sequenced mRNA
DOI: 10.6084/m9.figshare.22284415.v1
title: Ballistics Dataset

description: This dataset includes firing pin markings of 6 different pistol models with 3 different calibers obtained through reflective microscopy imaging. Dataset is also publicly available by NIST.
DOI: 10.6084/m9.figshare.25340929.v2
title: KEGG_build_2024-03-09

description: An archived version of the KEGG data directory for use in anvi'o. Can be set up on a computer with an anvi'o installation using the command `anvi-setup-kegg-data --kegg-archive KEGG_build_2024-03-09_23910d68b4f2.tar.gz` (specify a --kegg-data-dir to avoid overriding the default KEGG data directory, if one exists).This is the first KEGG snapshot for anvi'o that contains estimated bit score thresholds for what we call 'stray KOs', or KEGG Orthologs without bit score thresholds provided by KEGG. We have generated new KOfam models for some of these KO families to incorporate newly-added sequences from the KEGG GENES database, and these models are also in this snapshot. However, it does <i>not</i> contain data for metabolic modeling.Contains MODULES.db version 4.<br>Hash value of the database is 23910d68b4f2
DOI: 10.6084/m9.figshare.26983960.v1
title: Sectoral Economic Complexity Data

description: Data of the research paper: <b>Sectoral economic complexity and environmental degradation: a sectoral perspective on the EKC hypothesis.</b>Files included correspond to:<b>1. Countries_Income_Classification.xlsx:</b> Data of all 127 countries considered in the study, with respective World Bank income classifications for each year between 1995 and 2020.<b>2. Sectors_Products_Classification.xlsx:</b> Data of the 12 economic sectors considered in the study, with the respective 5,011 products assigned to their respecitve sector.<b>3. Regressions_SCI_Data.xlsx:</b> Data of the calculated Sectoral Complexixty Index (SCI) values with the respective CO2 emissions and control variables that were used in the regressions.<b>4. Regression_Coefficients.xlsx:</b> Coefficients with their respective t-values obtained from the quantiles regression model used in the study.
DOI: 10.60893/figshare.pte.26371351.v1
title: Supplementary Online Material 5 -final

description: Determining the uncertainty of the value of speed of electromagnetic waves
DOI: 10.17632/c5k8wjrhd9
title: Dataset on the questionnaire-based survey of sharing services users’ motivation

description: The data set presents data collected by online survey with a questionnaire using Likert scale. The survey sample included 184 adults (18+), active and potential users of different sharing services platforms.
DOI: 10.17632/wzf3tyvfk2
title: Compression testing of lattice structures

description: Compression tests of lattice structure cubic specimens.

Financed by the European Union - NextGenerationEU (National Sustainable Mobility Center CN00000023, Italian Ministry of University and Research Decree n. 1033 - 17/06/2022, Spoke 11 - Innovative Materials & Lightweighting). The opinions expressed are those of the authors only and should not be considered as representative of the European Union or the European Commission’s official position. Neither the European Union nor the European Commission can be held responsible for them. 

Keywords: Spoke11 - CNMS MOST, Ferrous alloys
DOI: 10.17632/zgph46p46f
title: Good and Bad Classification of Chickpea(Cicer arietinum L)

description: Title: Good and Bad Classification of Chickpea (Cicer arietinum L.)

Abstract:
Chickpea (Cicer arietinum L.) is a major legume crop valued for its high protein content and adaptability to diverse agro-climatic conditions. Classifying chickpea into good and bad categories involves evaluating several parameters, including morphological characteristics, agronomic traits, quality attributes, and resistance to biotic and abiotic stresses. This paper discusses the criteria for classifying chickpea cultivars as good or bad and presents recent advancements in breeding and selection practices.

Introduction:
Chickpea, commonly known as garbanzo bean, is one of the most important pulse crops globally. Its nutritional profile, comprising high protein, fiber, and essential minerals, makes it a staple in many diets. Despite its significance, chickpea productivity is often challenged by environmental stresses and diseases. Classifying chickpea varieties as good or bad is crucial for breeding, cultivation, and consumption purposes.

Criteria for Classification:
2.1 Morphological Characteristics:
Good chickpea cultivars typically exhibit uniform plant height, robust branching, and optimal pod setting. Bad cultivars may show irregular growth patterns, weak stems, and low pod production.

2.2 Agronomic Performance:
Yield potential, drought tolerance, and nutrient efficiency are key agronomic parameters. Good cultivars demonstrate consistent yields across variable conditions, while poor cultivars suffer from yield instability.

2.3 Quality Parameters:
Seed size, protein content, cooking quality, and market value define good quality chickpea. Poor quality chickpeas often have small, shriveled seeds, low protein, and prolonged cooking time.

2.4 Resistance to Biotic and Abiotic Stresses:
Good chickpea cultivars show resistance to diseases like Ascochyta blight and Fusarium wilt, as well as tolerance to drought and salinity. Susceptible cultivars face high crop loss and reduced market value.

Methods for Classification:

Phenotypic Evaluation

Molecular Markers

Field Trials

Genetic Mapping

Recent Advancements:

Marker-Assisted Selection (MAS)

Genomic Selection (GS)

Integrative Breeding Approaches

Conclusion:
Classifying chickpea varieties based on comprehensive criteria ensures the selection of superior cultivars for sustainable agriculture. Ongoing research in genetic improvement continues to enhance the resilience and productivity of chickpea.
DOI: 10.6084/m9.figshare.11338988.v1
title: Gene database of Listeria monocytogenes EGD-e

description: <i>Listeria monocytogenes</i> EGD-e is a flagellated Gram-positive bacterium capable of causing foodborne infections in humans. Able to adopt an intracellular lifestyle in human cells, <i>L. monocytogenes</i> EGD-e (NCBI Reference Sequence: NC_003210.1) is an important human pathogen. Various lines of enquiries have been extended to sought treatments for <i>L. monocytogenes</i> infections as well as understanding its pathogenesis mechanisms in lieu of discovering molecular targets for developing new therapeutics. By parsing the annotated genome sequence of <i>L. monocytogenes</i> EGD-e using an in-house MATLAB algorithm, this work sought to generate a gene database comprising gene names, gene function and gene sequence for aiding molecular research seeking to understand the provenance and mechanisms of <i>L. monocytogenes</i> infections.<br><br>
DOI: 10.17632/32h94v2yv2
title: Elucidation of E3 Ubiquitin Ligase Specificity . Zhang et al.Through Proteome-wide Degron Mapping. Zhang et al.

description: This repository contains sequencing data related to "Elucidation of E3 Ubiquitin Ligase Specificity Through Proteome-wide Degron Mapping" by Zhang et al. Data is included for the GPS peptidome screen with and without MLN, results from the composition-based SVM machine learning model, along with sequencing data for scanning and saturation mutagenesis degron footprints, and from CRISPR screens for identification of E3-degron pairs. Westernblot raw images from cycloheximide chase and co-immunoprecipitation assays are also included.
DOI: 10.17632/wtfw7w4jhh
title: THE INDUS SCRIPT: Recognition as an Alphabet

description: This paper introduces a groundbreaking approach to deciphering the Indus script, employed by the Indus Valley Civilization (IVC) from c. 3300 to 1900 BCE. Moving beyond previous methods, my research delves into the intricate structure of the script's signs, aiming to definitively settle the debate regarding its categorization. Specifically, I investigate whether the Indus script functions as an alphabet, presenting compelling evidence for the number of primary signs it comprises. My methodology meticulously examines over 400 signs, encompassing the entire corpus rather than relying on limited samples. This holistic approach utilizes a novel gridbased decomposition technique to visually dissect compound signs, identify diacritics with consistent usage patterns, and uncover the underlying principles of sign extraction. Through this rigorous analysis, I successfully isolate the essential primary signs and illuminate their potential phonetic representations within an alphabetic system. However, I acknowledge the intricate variations in writing styles present across the Indus corpus. These stylistic subtleties, encompassing formation, composition, and combination strategies, contribute to the apparent plurality of signs. Nonetheless, my findings reveal a core set of only 40 fundamental signs, suggesting a remarkably concise system beneath the surface complexity. By presenting this new paradigm for understanding the Indus script, I pave the way for further advances in its decipherment. Continued exploration of the identified core signs and their phonetic associations holds immense potential for unlocking the linguistic insights encoded within this enigmatic script, shedding light on a crucial chapter in human history.
DOI: 10.17632/2njr8phsyk
title: 2D-Broadband Absorption Metasurface Unicells Dataset for Predicting Optimum Structures for Tandem Solar Cells

description: 2D images of metasurface unit cell shapes and their design parameters. The geometry of the resonator was cross, square, L-shaped, window-shaped polygon and their inverted version. The shapes were chosen because of the ease of fabrication by the lithography technique. The 2D-array images of these metasurfaces were generated in MATLAB. The mesh step size of 100nm was maintained in all three dimensions. Periodic boundary conditions were applied in x and y dimensions while PML condition was applied on the z-axis to absorb/ transmit maximum light with minimum reflection. Each shape was converted into a greyscale 40 x 40 x 1-pixel image. Each pixel contains the minimum feature size of 80nm which lies within the fabrication range.
DOI: 10.17632/dk4tvxhct6
title: Study A phase 1 - qualitative interviews in Vietnam

description: Summary of qualitative interviews
DOI: 10.17632/j3nvn2cj2w
title: Structure and Charge Density of an Edge Dislocation Core in Iron

description: This dataset includes CONTCAR and CHGCAR files. Readers can visualize data using VESTA and OVITO software.
DOI: 10.17632/r22wypf38w
title: Metabolome of leaves of esca-affected grapevine

description: Metabolome of healthy, asymptomatic and symptomatic leaves of grapevine plants affected by esca complex disease, a grapevine trunk disease
DOI: 10.17632/xry23b3xzv
title: The original data on the enzymatic activity of GAGases and their mutants

description: This dataset comprises original experimental data on the enzymatic activity and structural-functional analysis of wild-type GAGases (GAGase II, III, VII) and their mutants. Specifically, it includes:


Wild-type GAGases: II, III, VII (expressed and purified)

Mutant Variants: Catalytic key site mutants (e.g., Asn, Tyr, His→Ala substitutions) and substrate-binding pocket mutants (e.g., Arg, Lys, His, Asn→Gly substitutions)

Experimental Data:

Activity Assays: Relative activity (absorbance in 232 nm) and HPLC raw data (raw chromatograms of reaction products (Analysis and separation by Superdex Peptide column).

Utility:
The dataset supports the study titled 'Crystal Structure and Catalytic Mechanism of PL35 Family Glycosaminoglycan Lyases with an Ultra-Broad Substrate Spectrum,' published in eLife.
DOI: 10.6084/m9.figshare.26409490.v3
title: the DEM-OPT-Depth SR Dataset

description: Multi-modal DEM Super-Resolution Using Relative Depth: A New Dataset and Beyond
DOI: 10.6084/m9.figshare.29082725.v2
title: Physiological data C. viridis juveniles

description: This database contains all the physiological data of <i>Centropomus viridis</i> juveniles.
DOI: 10.6084/m9.figshare.3811308.v2
title: SNP calls in VCF format

description: SNP calls in VCF format. As used in for:<br>Jeffares DC et al (2015). The Genomic and Phenotypic Diversity of Schizosaccharomyces pombe. Nature Genetics 47(3):235-241. doi: 10.1038/ng.3215.<br>http://www.ncbi.nlm.nih.gov/pubmed/25665008. <br>File: Schizosaccharomyces-pombe-snps.2012-12-12.filt3c.all.snps-only.anno4.vcf.gz<br>
DOI: 10.17632/9k26b8ddh6
title: Tourist Motivational Perspective Analysis of Homestay in Banaue, Ifugao: Basis for a Proposed Marketing Model By. Mr. John Michael C. Ibarra, CHP, MSHRM

description: ABSTRACT Homestay today is on the rise and has become one of many tourist attractions in the world. In some countries, the rise of homestay accommodation paved the way for local and foreign tourists to experience a multi ethnic life situation with cultural experiences and economic well beings of the local people through homestay program. The context of homestay tourism is described as a double-edge sword because even when communities succeed in operating a homestay program, this success comes at the price of diminished authenticity, greater dependence on tourism, and enhanced social and economic inequalities. This study focused on four motivational perspectives of tourists in staying at traditional hut homestays of Banaue, Ifugao. Tourist motivation leads to better goals by establishing the right picture of tourist satisfaction focusing on the business which later increases business success. Descriptive method was used to describe the demographic and sociographic profile of the tourists. Qualitative and quantitative methods were used. A self-made survey questionnaire was administered to 135 tourists and interview was conducted among tourists, homestay owners, and managers. Findings indicated that the tourists were extremely motivated in terms of humanistic perspective or hierarchy of needs. Moreover, social perspectives were important for the tourists especially on the sense of belongingness with the host family. In essence, this study shed light on the motivational perspectives of tourists which led to the proposed experiential Ifugao culture tourism marketing model for homestay program. Keywords Behavioural, Humanistic, Cognitive, Social, Satisfaction, Traditional Hut
DOI: 10.6084/m9.figshare.14128733.v1
title: Replication Tracks

description: BED files describing human replication tracks mapped by ORM. The columns are Chromosome Start End ID Fork_Direction_Index Polarity Number_of_Signals<br>
DOI: 10.6084/m9.figshare.15171369.v2
title: Sea surface temperature prediction based on FIO-CPS v2.0

description: The prediction of sea surface temperature (monthly) based on FIO-CPS v2.0 from 1993 to 2019<b>Variable Description:</b><br>alon:longituealat:latitudepretime: lead timemonth:start monthyear: start yearmv1sst2(alon,alat,pretime,month,year): sea surface temperature (degC)
DOI: 10.6084/m9.figshare.21946505.v1
title: merged_nodups.txt.gz

description: example .hic format file from HIC-seq data
DOI: 10.6084/m9.figshare.23904408.v10
title: <b>A database of </b><b>basic information and</b><b> reproductive characteristics of freshwater fish</b><b> species</b><b> in China</b>

description: Fish species in freshwater habitats play an important role in maintaining the health of freshwater ecosystems and providing nutrition for human society, but are especially vulnerable to the impacts of human activities represented by dam constructions on their reproductive process. Although the extensive research on reproductive biology of freshwater fish species in China has been well conducted, a comprehensive online, public database related to reproductive characteristic does not exist. In this paper, based on a list of 1,384 freshwater fishes species in China, underlying reproductive characteristic data were extracted from published papers (n=1,020), monographs and reports (n=63), data-sharing websites (n=7) and disposaled in a standardised way to form a national scale database. The focus of this database mainly including spawning seasons, spawning temperature, diameter and properties of fish eggs, incubation conditions and migratory habits. This database represents a highly valuable source of information for further studies on numerical simulation of freshwater ecosystem and conservation of freshwater fish diversity.
DOI: 10.6084/m9.figshare.25526326.v1
title: SNPs_all_matrix.FASTA

description: The SNP matrix file (SNPs_all_matrix.fasta) of 583 <i>S. aureus</i> isolates generated by kSNP3.021.