cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/p769t7c5bk
title: libEMM: A fictious wave domain 3D CSEM modelling library bridging sequential and parallel GPU implementation

description: This paper delivers a software - libEMM - for 3D controlled-source electromagnetics (CSEM) modelling in fictitious wave domain, based on the newly developed high-order finite-difference time-domain (FDTD) method on non-uniform grid. The numerical simulation can be carried out over a number of parallel processors using MPI-based high performance computing architecture. The FDTD kernel coded in C has been parallelized with OpenMP for speedup using local shared memory. In addition, the software features a GPU implementation of the same algorithm based on CUDA programming language, which can be cross-validated and compared in terms of efficiency. A perspective of libEMM on the horizon is its application to 3D CSEM inversion in land and marine environment.
DOI: 10.17632/pddstg4gyz
title: Science Island dataset 2023

description: # Science Island goal analysis


Quantitative evaluation of emotional goals
Quantitative evaluation aims
The study collected quantitative data about the application of the right design method during the quest level development of the Science Island project. The right design method includes a coloured rating scale, as described in chapter five Figure 5.7. The quantitative data collection part of the study has three aims. Firstly, to evaluate whether the use of a numeric scale is effective at representing emotional goals, secondly to find out the benefits of rating emotional goals collectively and thirdly to investigate the translation of the emotional goal rating from a number into a visualisation.


Qualitative evaluation of emotional goals
Qualitative evaluation aims
The qualitative study had three aims. Firstly, to see whether collective intentionality formed through the goal rating process. Secondly, to find out how important the student developers thought emotional goals were in guiding their design outcomes. Thirdly, to see what level of focus the emotional goals received in relation to the other project goals and roles.  To elicit responses relevant to these aims, the following questions were asked by the lecturer, after the students had completed their rating of the project goals. 

Questions for aim one: How difficult was it to agree on a score? Did you all agree straight away or was there a lot of discussion?
Questions for aim two: How did the goals guide you with your development and design? Which ones and how?
Questions for aim three: Did you consider the emotional, quality, and functional goals separately and which of these types of goals were most relevant during the project development?



## Sharing/access Information
Towards Wonderful Design: Elements, Principles, Methods & Applications
Author: Marshall, James George

https://researchbank.swinburne.edu.au/items/104a6ce1-3475-48ee-9119-30a29bc69bb3/1/
DOI: 10.17632/r8bzy85p72
title: Neave et al. Do Walking Distance and Time Away from the paddock Influence Daily Behaviour Patterns and Milk Yield of Grazing Dairy Cows?

description: Complete data set used in final statistical analysis
DOI: 10.17632/swxsk5mgxb
title: Western Blot original Image

description: P2X4R protein expression from mouse hippocampi lysates from wt and P2X7R-deficient animals.
DOI: 10.17632/ttxb7nt4cr
title: The influence of explicit and implicit visual cues on individual perceptual characteristics and social behaviors and their association with autistic traits

description: Four groups of Chinese college students participated in the research: Study 1 examined how these cues affect individual perceptual characteristics and their association with autistic traits (n1a=40; n1b=42). Study 2 examined how these cues affect individual dishonest behavior and their association with autistic traits (n2a=43; n2b=43). The results indicate that individuals are more sensitive to faces with direct gaze and larger pupils. Moreover, when faced with social objects exhibiting these cues, individuals' dishonest behavior decreases. We also found that individuals with higher levels of autistic traits are less sensitive to gaze direction in non-social tasks but more affected by gaze direction in social tasks. However, there was no correlation between the level of autistic traits and changes in implicit visual cues.
DOI: 10.17632/v2g9j4dkh9
title: LINF_300005800

description: mitotic cyclin
Leishmania infantum (strain JPCM5)
DOI: 10.17632/vpwsttrjfh
title: Lateralization of short-term memory in the frontal cortex

description: In this research, we studied the information encoding and interactions of left and right frontal cortical areas in multiple short-term memory tasks. Combined with optogenetics and electrophysiological recordings, we revealed differential contribution of the two areas to short-term memory and the underlying neural mechanisms. 
Here, we provide:
1. Single units, recorded in behavior mice with different optogenetics manipulations, and related behavior data. 
2. MATLAB/Python codes for data analysis.
DOI: 10.17632/wfx9vggc35
title: Margiev_Agroface_2021

description: Финансовая модель платформы Agroface.ge
DOI: 10.17632/3ps7b35w6t
title: Targeted metabolomics in control or PERKKO AML cells incubated with vehicle or GSK621

description: Related to Figure 3. Results are provided as amounts of metabolites in pmol/106 cells. ATP: adenosine triphosphate; ADP: adenosine diphorphate; AMP: adenosine monophosphate; G6P: glucose-6-phosphate; FBP: fructose 1,6 biphosphate; 23BPG: 2,3 biphosphoglyceric acid; PEP: phosphoenolpyruvic acid; 6PG: 6-phosphogluconate; P5P: ribose_ribulose_xylulose 5-phosphate; SED7P: Sedoheptulose 7-phosphate; AKG: alpha ketoglutarate; 	GMP: guanosine monophosphate; GDP: guanosine diphosphate; CMP: cytosine monophosphate; CDP: cytosine diphosphate; CTP: cytosine triphosphate; UMP: uridine monpphosphate; UDP: uridine biphosphate; UTP: uridine triphosphate; UDP gLC: UDP-glucose; UDP AcGlnc: UDP-N-acetylglucosamine; G3P: Glycerol 3-phosphate; MAN 6P: mannose 6-phosphate.
DOI: 10.17632/46mjk7w5s4
title: Boca Raton Excavation Screen Size Element Counts

description: This data includes measurements and counts of faunal artifact bone elements collected using different size mesh screens.  The faunal bone artifacts came from an excavation in Boca Raton, FL.
DOI: 10.17632/562xzvdkw2
title: Data for: Late Jurassic extension event in the Yanshan fold and thrust belt (North China) recorded by a multidisciplinary study of the emplacement mechanism of Siganding pluton

description: Supplementary data
DOI: 10.17632/82jmzjhckh
title: Partial Offloading with Stable Equilibrium in Fog-cloud Environments using Replicator Dynamics of Evolutionary Game Theory

description: In this research, we propose a solution for partial offloading based on the replicator equation of evolutionary game theory. The ultimate goal is for users to be in a stable equilibrium based on their priorities in terms of energy consumption, latency, and computational cost so that no user is willing to change his/her strategy. The results of solving the replicator equation followed by statistical analysis show that the proposed method has a remarkable performance improvement compared to the state-of-the-art methods. Our method not only shows a better average based on the weighted combination of energy consumption, latency, and cost but also has a lower variance compared to the full local execution and the full offloading methods. Our results also show that when the number of users is very large, the system can reach equilibrium with the least amount of information exchange among players.
DOI: 10.17632/8ffcg272cn
title: Characterization of Tragacanth bioflocculant and Tr-g-PAM grafted copolymer by FTIR spectroscopy, X-Ray Diffraction spectroscopy, Energy-dispersive X-ray spectroscopy, Thermogravimetric Analysis, and Differential Scanning Calorimetry.

description: Data for "Microwave-assisted synthesis of tragacanth gum grafted copolymer (Tr-g-PAM) and its application as bioflocculant for the treatment of textile wastewater: swelling behavior and biodegradation studies."
DOI: 10.17632/982k4xhj5t
title: Data of Geochronology and geochemistry of Upper Paleozoic sandstones at Tiekelike, NW China: Implications for the tectonic evolution of the southwestern margin of the Tarim Block

description: Table 1. Sample location of the studied Upper Paleozoic sandstones (QF, KF, and TF) from the Tiekelike Uplift.
Table 2. Sample location of the studied sandstones used for zircon U–Pb geochronology.
Table 3. Major elements (wt%), trace elements (ppm), REE (ppm) and element ratios of the studied Upper Paleozoic sandstones from the Tiekelike Uplift in comparison to the average compositions of international sediments from references. 
Table 4. LA–ICP–MS U–Pb isotopic data for detrital zircons from the studied Upper Paleozoic sandstones from the Tiekelike Uplift.
Table 5. Detailed explanation of zircon U–Pb ages, Th/U ratios, and zircon morphology and texture for every cluster ages of the QF, KF, and TF, respectively.
Table 6. Comparison of elemental ratios of QF, KF, and TF sandstones with similar ratios from felsic rocks, mafic rocks, and upper continental crust.
Table 7. Geochronological data of the granitoids, sedimentary and metamorphic rocks from the Tiekelike Tectonic Belt and the Western Kunlun Orogenic Belt.
DOI: 10.17632/fch5m3kt42
title: Endosomal trafficking and DNA damage checkpoint kinases dictate survival to replication stress by regulating amino acid uptake and protein synthesis

description: Atg6/Beclin 1 mediates autophagy and endosomal trafficking. We investigated how Atg6 influences replication stress. Combining genetic, genomic, metabolomic and proteomic approaches we found that the Vps34-Vps15-Atg6/Beclin 1-Vps38/UVRAG-phosphatydilinositol-3 phosphate (PtdIns(3)P) axis sensitizes cells to replication stress by favoring the degradation of plasma membrane amino acid (AA) transporters via endosomal trafficking and ESCRT proteins, while the PtdIns(3)P phosphatases Ymr1 and Inp53 promote survival to replication stress by reversing this process. An impaired AA uptake triggers activation of Gcn2, which attenuates protein synthesis by phosphorylating eIF2α. Mec1/Atr-Rad53/Chk1/Chk2 activation during replication stress further hinders translation efficiency by counteracting eIF2α dephosphorylation through Glc7/PP1. AA shortage-induced hyperphosphorylation of eIF2α inhibits the synthesis of 65 stress response proteins, thus resulting in cell sensitization to replication stress, while TORC1 promotes cell survival. 
Our findings reveal an integrated network mediated by endosomal trafficking, translational control pathways and checkpoint kinases linking AA availability to the response to replication stress.
DOI: 10.17632/fky5n2nt9x
title: Data and Script for Killen et al Guidelines for reporting methods to estimate metabolic rates by aquatic intermittent-flow respirometry

description: Data and Script or the manuscript "Guidelines for reporting methods to estimate metabolic rates by aquatic intermittent-flow respirometry". ABSTRACT: Interest in the measurement of metabolic rates is growing rapidly, due to the relevance of metabolism in understanding organismal physiology, behaviour, evolution and responses to environmental change. The study of metabolism in aquatic animals is undergoing an especially pronounced expansion, with more researchers utilising intermittent-flow respirometry as a research tool than ever before. Aquatic respirometry measures rate of oxygen uptake a proxy for metabolic rates and the intermittent-flow technique has numerous strengths for use with aquatic animals, allowing metabolic rate to be repeatedly estimated on individual animals over several hours or days and during exposure to various conditions or stimuli. There are, however, no published guidelines for reporting of methodological details when using this method. Here we provide the first guidelines for reporting intermittent-flow respirometry methods, in the form of a checklist of criteria that we consider to be the minimum required for the interpretation, evaluation and replication of experiments using intermittent-flow respirometry. Furthermore, using a survey of the existing literature, we show that there has been incomplete and inconsistent reporting of methods for intermittent-flow respirometry over the last several decades. Use of the provided checklist of required criteria by researchers when publishing their work should increase consistency of the reporting of methods for studies that use intermittent-flow respirometry. With the steep increase in studies using intermittent-flow respirometry, now is the ideal time to standardise reporting of methods, so that – in the future – data can be properly assessed by other scientists and conservationists.
DOI: 10.17632/g3vx2n2nrj
title: Recombination Effects in Parallel Plate Ionisation Chambers for FLASH Radiotherapy with Ion-Beams; Master Thesis from Leon Baack

description: Masterarbeit, 2021, from Leon Baack containing many plotted data and detailed formulas.

This upload and publication is intended as additional material for the corresponding paper to be published as : 
"Reduction of Recombination Effects in Large Plane Parallel Beam Monitors for FLASH Radiotherapy with Scanned Ion Beams" , for the Journal Physica Medica, FRPT2021 special issue, to be published 2022.

Another bachelor work with a related topic is also added: 
Sulaiman Aqra  , "Messungen des Ansprechverhaltens eines neuen Intensitäts-Messsystems für die Raster-Scanning Bestrahlung mit geladenen Teilchen"  (English: "Measurements of the response of a new intensity monitoring system for a raster-scanning system with charged particles ") ,  2018, Technische Hochschule Mittelhessen. This work deals also with the response of parallel-plate Iionisation chambers, filled with Ar/CO2 or Helium.
DOI: 10.17632/g87ngw878k
title: LINF_320017300

description: Ketoacyl-CoA synthase | fatty acid elongase | ELO-6; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gxtkyxgn5c
title: Thyroid function and COVID-19 susceptibility and its severity: A Two-sample Mendelian randomization study

description: Supplementary Materials
DOI: 10.17632/tgjjxfvvsx
title: Cytotoxicity and anti-inflammatory properties of compounds isolated from Uromyrtus metrosideros

description: The bioactivity of four compounds isolated from Uromyrtus metrosideros (numbered 3-6), and its polar crude extract (PCE) were tested in human peripheral blood mononuclear cells (PBMCs). 

First, cytotoxicity (or cell viability) of these compounds was tested at 10 μg/mL using the RealTime-Glo™ MT cell viability assay. Luminescence (RLU) was measured at 1, 6, and 24 h after treatment, using referencing the untreated samples as reference, and lysis buffer as a positive control. 

Next, human cytokine suppression by these four compounds and PCE was tested at 10 μg/mL. Inflammatory cytokines (IFN-γ, IL-17A, IL-8, and TNF) were induced in two ways. First, the PBMCs from three donors were activated with a cell stimulation cocktail of 50 ng/mL phorbol 12-myristate 13-acetate and 1 μg/mL ionomycin (P/I; eBioscience). Second, the PBMCs from four donors were cultured in the presence of Dynabeads Human T-Activator CD3/CD28 (Gibco). Cytokine concentrations were determined using a standard LEGENDplex™ human inflammation panel 1 (BioLegend®), LSRFortessa (BD), and LEGENDplex™ software (version 2022-02-10, Qognit, Inc.). 

PBMCs of three donors were used for Cell viability assay, and four donors for cytokine suppression assay.

Compound details and variables in each dataset are provided in Compound details and Abbreviations.xlsx file.
R scripts for statistical analyses and plots are provided for each experiment separately.
DOI: 10.17632/vs3msdvsvw
title: A lncRNA from the FTO locus acts as a suppressor of the m6A writer complex and p53 tumor suppression signaling

description: western blot image
DOI: 10.17632/wfs8k2pphd
title: Posterior distribution of trees used in Michielsen et al

description: Posterior distribution of phylogenetic trees from Upham et al 2019 (PlosBiology) used in the Michielsen et al study (Nature Communications). 1000 trees from the DNA-only and completed trees from Upham et al. 2019
DOI: 10.17632/zckyw7rjkh
title: Detroit Tephra Dataset

description: This dataset contains supplementary data to manuscript by Ponomareva, V., Portnyagin, M., Bubenshchikova, N.V., Zelenin, E., Derkachev, A., Jicha, B., Gorbarenko, S., Cook, E., Garbe-Schönberg, D., Hoernle, K. "A 6.2 Ma-long record of 1 major explosive eruptions from the NW Pacific volcanic arcs based on the offshore tephra sequences on the northern tip of the Emperor Seamount Chain" prepared for publication in Geochemistry Geophysics Geosystems.
DOI: 10.17632/zkv7t9h53w
title: The influence of defects about mechanical strength of polyethylene pipes

description: For the PEHD buried pipe, the overall composed of total load (soil + traffic), internal pressure, own weight and linear expansion, contributes on reaching the limit state, as well as to the stress distribution, σl - longitudinal stress, σc - circumferential stress and σr - radial stress. 
is the basis for assessing the integrity of pressure vessels using, for example, von Mises breakdown criterion.
The defects or local stresses, unavoidable in polyethylene pipes (due to manufacturing and welding technologies, laying of bedless pipes, fingerprints produced by a third party etc.) lead to the local concentration of stresses, representing the area susceptible to the initiation and propagation of cracks in within the breaking processes.
By successively changing the depth, length and angle of generation of the defect, it was found that both the maximum equivalent stress and the 
maximum deformation have a continuous variation depending on the values of the characteristics of the defect.
Analyzing the behavior of the PE-model pipe, it was observed that for identical values of the defect characteristics a = 2.7 mm, L = 10 mm, θ = 10 degree identical values of the maximum equivalent stress and the equivalent elastic deformation in the direction are obtained, longitudinal and radial, but different from those in the circumferential direction.
DOI: 10.17632/zm7rr9ngn5
title: Experimental dataset on water levels in the investigation of silted-up dam break flood wave for dry- and wet-bed downstream conditions while 50 to 80% of the dam reservoir is filled-up with sediment

description: Experimental data collection In this file, all water level data associated with 20 different silted-up dam break scenarios were extracted from high-quality experimental video images. The dataset are collected, classified and presented a total of 20 distinct tables in 5 categories based on initial upstream sediment depth; 15 cm, 17.5 cm, 20 cm, 22 cm and 24 cm. Tables 1-4, present the free surface water level data at 20 different locations along the flume and 15 snap times after the dam break, while the initial upstream sediment depth is 15 cm (50% of the reservoir height). Dry- and wet-bed initial downstream condition with 2 cm, 4 cm and 5 cm standing water depth are detailed in Table 1-4, respectively. Table 5-8 provide the free surface water level data at all abovementioned sections and snap times while the initial upstream sediment depth is 17.5 cm (58% of the reservoir height), and dry- or wet-bed downstream with 2 cm, 4 cm and 5 cm standing water depth were considered as initial downstream conditions, respectively. Table 9-12 show the free surface water level data at all sections and snap times while the initial upstream sediment depth is 20 cm (67% of the reservoir height), and dry- or wet-bed downstream with 2 cm, 4 cm and 5 cm standing water depth were considered as initial downstream conditions, respectively. Table 13-16 provide the free surface water level data at all sections and snap times while the initial upstream sediment depth is 22 cm (73% of the reservoir height), and dry- or wet-bed downstream with 2 cm, 4 cm and 5 cm standing water depth were considered as initial downstream conditions, respectively. Table 17-20 show the free surface water level data at all sections and snap times while the initial upstream sediment depth is 24 cm (80% of the reservoir height), and dry- or wet-bed downstream with 2 cm, 4 cm and 5 cm standing water depth were considered as initial downstream conditions, respectively. Foad Vosoughi, Mohammad Reza Nikoo, Gholamreza Rakhshandehroo, Amir H. Gandomi First author Foad Vosoughi Research Associate, Civil Eng. Department, Shiraz University, Shiraz, Iran. Email address: foad.vosooghi@gmail.com ORCID: 0000-0002-4321-9788 Second author Mohammad Reza Nikoo Associate Professor, Civil Eng. Department, Shiraz University, Shiraz, Iran. Third author Gholamreza Rakhshandehroo Professor, Civil Eng. Department, Shiraz University, Shiraz, Iran. Fourth author Amir H. Gandomi Professor, Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, Australia.
DOI: 10.17632/zs6m8hh6wf
title: KNOWLEDGE AND ATTITUDE TOWARDS TUBERCULOSIS (TB) IN N0N-MEDICAL STUDENT IN THE UNIVERSITY OF MMDU

description: The infectious disease known as tuberculosis (TB) is communicable and is brought on by the Mycobacterium tuberculosis complex.  A cross-sectional survey study was conducted at MMDU Mullana, Ambala. The survey was conducted in the form of a self-developed questionnaire. Students with other than medical backgrounds were allowed to fill out the form. Out of 288, 286 are willing to participate in the study which gives a response rate of 99.8%. 158 males and 130 females participated in the study and the mean age calculated was 21.85. P value is < 0.001, it is highly significant. 52.8% of respondents are aware of tuberculosis and 58.7% know who is the causative organism. 38.5% of respondent know what are the symptoms of tuberculosis, 31.3% of respondent have good knowledge about the treatment of tuberculosis, 38.9% knows what are the preventive measures of TB, 49.3% knows it can be prevented, and 52.1% knows how it is transmitted from one person to another person. The study concluded that students without medical backgrounds have good knowledge of tuberculosis
DOI: 10.17632/5j9rrwsvs7
title: Columb LEP Solver V. 1.3.5

description: A program solving active LEP using Columb's method.
DOI: 10.17632/7zn82588ry
title: New promising class of anode materials for Ca-ion battery: Polyaromatic hydrocarbons

description: Data for the New promising class of anode materials for Ca-ion battery: Polyaromatic hydrocarbons (CONTCARS, INCARS, KPOINTS)
DOI: 10.17632/bryvv5gvhv
title: Data for: Whole genome sequence data of Mycobacterium tuberculosis XDR strain, isolated from patient in Kazakhstan

description: Raw sequencing reads (fastq), analyzed and assembled genome sequence (fasta)
DOI: 10.17632/c4c6nzvcsc
title: Quantitative Proteomics Reveal the Protective Effects of CuraUltrad Against Alzheimer's Disease via Modulating the Expression of Synapse-associated Proteins in Mouse Model

description: Data of Quantitative Proteomics Reveal the Protective Effects of CuraUltrad Against Alzheimer's Disease via Modulating the Expression of Synapse-associated Proteins in Mouse Model
DOI: 10.17632/ddntr48m83
title: Data for: Japanese macaques exhibit pessimistic judgment bias after seeing snake pictures

description: Datasets and R codes necessary to reproduce the analysis in the manuscript.
DOI: 10.17632/dty5vpfrnc
title: Residential BB in YRD

description: Residential BB concentrations and contribution in YRD