cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2l45qn
title: CCDC 2387301: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45rp
title: CCDC 2387302: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45sq
title: CCDC 2387303: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45tr
title: CCDC 2387304: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45vs
title: CCDC 2387305: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45wt
title: CCDC 2387306: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45xv
title: CCDC 2387307: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45yw
title: CCDC 2387308: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l45zx
title: CCDC 2387309: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l460z
title: CCDC 2387310: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l4610
title: CCDC 2387311: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l4621
title: CCDC 2387312: Experimental Crystal Structure Determination

description: Related Article: Roberto M. Diaz-Rodriguez, Diogo A. Gálico, Daniel Chartrand, Muralee Murugesu|2024|J.Am.Chem.Soc.|146|34118|doi:10.1021/jacs.4c13805
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jvh0x
title: CCDC 2349149: Experimental Crystal Structure Determination

description: Related Article: M. Moya, G.R. Liendo-Polanco, R. Atencio, P. Silva, J.A. Henao, J. Bruno-Colmenares|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|782|doi:10.1107/S2052520624009934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jvh1y
title: CCDC 2349150: Experimental Crystal Structure Determination

description: Related Article: M. Moya, G.R. Liendo-Polanco, R. Atencio, P. Silva, J.A. Henao, J. Bruno-Colmenares|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|782|doi:10.1107/S2052520624009934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j45b6
title: CCDC 2327707: Experimental Crystal Structure Determination

description: Related Article: Y. Bibila Mayaya Bisseyou, J. Wright, C. Jelsch|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|766|doi:10.1107/S2052520624010011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jvh30
title: CCDC 2349152: Experimental Crystal Structure Determination

description: Related Article: M. Moya, G.R. Liendo-Polanco, R. Atencio, P. Silva, J.A. Henao, J. Bruno-Colmenares|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|782|doi:10.1107/S2052520624009934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fcndw
title: CCDC 2245528: Experimental Crystal Structure Determination

description: Related Article: M. Kanagavel, S. Balasubramanian, S.K. Nechipadappu|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|793|doi:10.1107/S2052520624010278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fcncv
title: CCDC 2245527: Experimental Crystal Structure Determination

description: Related Article: M. Kanagavel, S. Balasubramanian, S.K. Nechipadappu|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|793|doi:10.1107/S2052520624010278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fcngy
title: CCDC 2245530: Experimental Crystal Structure Determination

description: Related Article: M. Kanagavel, S. Balasubramanian, S.K. Nechipadappu|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|793|doi:10.1107/S2052520624010278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kt1q5
title: CCDC 2377567: Experimental Crystal Structure Determination

description: Related Article: M. Kanagavel, S. Balasubramanian, S.K. Nechipadappu|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|793|doi:10.1107/S2052520624010278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kt1r6
title: CCDC 2377568: Experimental Crystal Structure Determination

description: Related Article: M. Kanagavel, S. Balasubramanian, S.K. Nechipadappu|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|793|doi:10.1107/S2052520624010278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.uzf5e7
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Santalaceae"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062615-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6z743
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Ecuador",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 246 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062614-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7n988b
title: Occurrence Download

description: A dataset containing 21016805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 21016805 records from 884 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062612-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ydtsu
title: Occurrence Download

description: A dataset containing 965795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhodophyta"
 ]
}

 The dataset includes 965795 records from 510 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062611-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12721800
title: Annotated patches of whole oilseed rape (Brassica napus) plant images created using the MapReader pipeline

description: Background and Dataset Creation:

Patches derived from whole images of oilseed rape (Brassica napus) plants from the 'Collection of side view and top view RGB images of Brassica napus from a large scale, high throughput experiment' dataset and their associated annotations, which were used to train, validate and test patch classification models as described in the following paper:

Corcoran, E., Hosseini, K., Siles, L., Kurup, S., and Ahnert, S. 2024. 'Automated dynamic phenotyping of whole oilseed rape (Brassica napus) plants from images collected under controlled conditions', Frontiers in Plant Science (under review). 

Patches were created and annotated using the MapReader pipeline. Please see: 



Kasra Hosseini, Daniel C. S. Wilson, Kaspar Beelen, and Katherine McDonough. 2022. MapReader: a computer vision pipeline for the semantic exploration of maps at scale. In Proceedings of the 6th ACM SIGSPATIAL International Workshop on Geospatial Humanities (GeoHumanities '22). Association for Computing Machinery, New York, NY, USA, 8–19. https://doi.org/10.1145/3557919.3565812

Kasra Hosseini, Rosie Wood, Andy Smith, Katie McDonough, Daniel C.S. Wilson, Christina Last, Kalle Westerling, and Evangeline Mae Corcoran. “Living-with-machines/mapreader: End of Lwm”. Zenodo, July 27, 2023. https://doi.org/10.5281/zenodo.8189653.


File structure:

Annotations

The 'annotations_six_label_sv_5.zip' folder contains annotations for the entire patch dataset in .csv format, these files have two columns 'image_id', 'label' in which:



'image_id' = the path to each image patch

'label' = the label assigned to each patch by the annotator indicated which part of the plant the patch primarily contained, or if it was part of the background. Labels: '0' = non-plant background, '1' = open flower, '2' = flower bud, '3' = leaf, '4' = greed pod containing seed, '5' = branch. 


Patches

The 'b_napus_patch_data.zip' folder contains all patches in csv format. Each file is named in a consistent format e.g. "patch-1580-330-1590-340-#2018-07-06_00_VIS_sv_000-0-0-0.png#.PNG" where '1580-330-1590-340' are the x and y coordinates of the patch boundary and '#2018-07-06_00_VIS_sv_000-0-0-0.png#' indicates the image in the 'Collection of side view and top view RGB images of Brassica napus from a large scale, high throughput experiment' from which the patch was derived.
DOI: 10.5281/zenodo.12721801
title: Annotated patches of whole oilseed rape (Brassica napus) plant images created using the MapReader pipeline

description: Background and Dataset Creation:

Patches derived from whole images of oilseed rape (Brassica napus) plants from the 'Collection of side view and top view RGB images of Brassica napus from a large scale, high throughput experiment' dataset and their associated annotations, which were used to train, validate and test patch classification models as described in the following paper:

Corcoran, E., Hosseini, K., Siles, L., Kurup, S., and Ahnert, S. 2024. 'Automated dynamic phenotyping of whole oilseed rape (Brassica napus) plants from images collected under controlled conditions', Frontiers in Plant Science (under review). 

Patches were created and annotated using the MapReader pipeline. Please see: 



Kasra Hosseini, Daniel C. S. Wilson, Kaspar Beelen, and Katherine McDonough. 2022. MapReader: a computer vision pipeline for the semantic exploration of maps at scale. In Proceedings of the 6th ACM SIGSPATIAL International Workshop on Geospatial Humanities (GeoHumanities '22). Association for Computing Machinery, New York, NY, USA, 8–19. https://doi.org/10.1145/3557919.3565812

Kasra Hosseini, Rosie Wood, Andy Smith, Katie McDonough, Daniel C.S. Wilson, Christina Last, Kalle Westerling, and Evangeline Mae Corcoran. “Living-with-machines/mapreader: End of Lwm”. Zenodo, July 27, 2023. https://doi.org/10.5281/zenodo.8189653.


File structure:

Annotations

The 'annotations_six_label_sv_5.zip' folder contains annotations for the entire patch dataset in .csv format, these files have two columns 'image_id', 'label' in which:



'image_id' = the path to each image patch

'label' = the label assigned to each patch by the annotator indicated which part of the plant the patch primarily contained, or if it was part of the background. Labels: '0' = non-plant background, '1' = open flower, '2' = flower bud, '3' = leaf, '4' = greed pod containing seed, '5' = branch. 


Patches

The 'b_napus_patch_data.zip' folder contains all patches in csv format. Each file is named in a consistent format e.g. "patch-1580-330-1590-340-#2018-07-06_00_VIS_sv_000-0-0-0.png#.PNG" where '1580-330-1590-340' are the x and y coordinates of the patch boundary and '#2018-07-06_00_VIS_sv_000-0-0-0.png#' indicates the image in the 'Collection of side view and top view RGB images of Brassica napus from a large scale, high throughput experiment' from which the patch was derived.
DOI: 10.15468/dl.ghjwh3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neoperla niponensis (McLachlan, 1875)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185121-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjv57n
title: Occurrence Download

description: A dataset containing 2634469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brassicaceae"
 ]
}

 The dataset includes 2634469 records from 964 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113081-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gn4tnt
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pardosa pseudoannulata (Bösenberg & Strand, 1906)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185071-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnf3sd
title: Occurrence Download

description: A dataset containing 558 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calandrinia acaulis Kunth"
 ]
}

 The dataset includes 558 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113088-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnquu7
title: Occurrence Download

description: A dataset containing 7196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Country is one of (United States of America, Mexico, Canada)",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Grus americana (Linnaeus, 1758)"
 ]
}

 The dataset includes 7196 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0113242-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.