cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27861744.v1
title: Dataset and script for "<b>Development of an environmental and fecal DNA tool for monitoring the spatial distribution and fish predation </b><b>on</b><b> the </b><b>mountain</b><b> amphibian </b><b><i>Calotriton asper</i></b>"

description: Gathering ecological knowledge about species <b>with cryptic behavior</b> can be challenging and strongly depends on human, financial, and logistical resources. Yet, this is essential for the conservation of threatened and/or <b>elusive</b> species and wildlife management. The use of DNA tools is emerging as an efficient solution to overcome these constraints. Here, we developed specific primers and a droplet digital PCR (ddPCR) protocol for the quantitative detection of the endemic amphibian <i>Calotriton asper</i> in freshwater and fish feces. After successful in silico validation of the developed primers, we tested their validity in the wild. We first confirmed the presence of <i>C. asper</i> in 8 out of 13 sites deemed climatically suitable for the species, although it had never been observed there before. Then, we sampled brown trout (<i>Salmo trutta</i>) living in sympatry with <i>C. asper</i> and, through fish feces analyses, confirmed that brown trout are predators of <i>C. asper</i>. These molecular tools proved efficient for monitoring (i) <b>elusive</b> species such as <i>C. asper</i> in the wild, allowing for better characterization of their current distribution and habitat use, and (ii) predation events by fish, which might be a significant pressure on low-density and isolated <i>C. asper</i> populations. We provide a valuable, low-cost, and complementary tool for environmental managers and scientists that should help improve the development of fine-tuned conservation and management plans for <i>C. asper</i>.The dataset and script allow for running the SDM described in this MS
DOI: 10.6084/m9.figshare.10059143.v1
title: Supplementary Material for: Fixed-Effects Analyses of Time-Varying Associations between Hobbies and Depression in a Longitudinal Cohort Study: Support for Social Prescribing?

description: Medicine
DOI: 10.17632/3m93j9kcf6
title: Data for: Cow- and herd-level factors associated with lameness in small-scale grazing dairy herds in Brazil

description: Data and R code for individual and group level analyses of factors associated with lameness in small-scale grazing dairy herds
DOI: 10.17632/yg58dn8b9c
title: AI-Solubility algorithm

description: The model development was carried out in the Google Colaboratory environment, using the NumPy (version 1.25.2), Pandas (version 2.0.3) and Matplotlib (version 3.7.1) libraries for data processing and plotting. The 4615 available data were split into 80% training data and 20% test data using the train_test_split function of the scikit-learn library with a random seed of random_state=0. The data were then normalised. 
The data was then normalised using the StandardScaler method. A neural network was implemented with an input layer of 66 neurons, a hidden layer of 128 neurons and a ReLu activation function, and an output layer of one neuron and a ReLu activation function to predict solubility.
The neural network was trained using the Adam optimiser with a learning rate (learning_rate=0.001) of 35 epochs using the Keras library of TensorFlow. To avoid overfitting, Dropout, with a dropout rate of 20% was used as a regularisation technique by deactivating neurons during training to avoid overfitting. The different accuracy metrics were evaluated to analyse the model performance.
DOI: 10.6084/m9.figshare.25794051.v1
title: Supplementary Material for: Endoscopic diagnosis of epithelial subtypes of superficial non-ampullary duodenal epithelial tumors using magnifying narrow-band imaging.

description: Introduction: Superficial non-ampullary duodenal epithelial tumors (SNADETs) include low-grade adenoma (LGA) and high-grade adenoma or carcinoma (HGA/Ca), and are classified into two different epithelial subtypes, gastric-type (G-type) and intestinal-type (I-type). We attempted to distinguish them by endoscopic characteristics including magnifying endoscopy with narrow-band imaging (M-NBI). 
Methods: Various endoscopic and M-NBI findings of 286 SNADETs were retrospectively reviewed and compared between G- and I-types and histological grades. M-NBI findings were divided into four patterns based on the following vascular patterns; absent, network, intrastructural vascular (ISV), and unclassified. Lesions displaying a single pattern were classified as mono-pattern and those displaying multiple patterns as mixed-pattern. Lesions showing CDX2 positivity were categorized as I-types and those showing MUC5AC or MUC6 positivity were categorized as G-types based on immunohistochemistry.
Results: Among 286 lesions, 23 (8%) were G-type and 243 (85%) were I-type. More G-type lesions were located oral to papilla (91.3％ vs 45.6％, P&lt;0.001), and had protruding morphology compared to those of I-types (65.2% vs 14.4%, P&lt;0.001). The major M-NBI pattern was ISV in G-type (78.2% vs 26.3％, P&lt;0.001), and absent for I-type (0% vs 34.5%, P=0.003). Three endoscopic characteristics; location oral to papilla, protruding morphology and major M-NBI pattern (ISV) were independent predictors for G-type. Mixed-pattern was more common in HGA/Ca than LGA for I-type (77.0% vs 58.8%, P＝0.01); however, there was no difference for those in G-type. 
Conclusion: Endoscopic findings including M-NBI is useful to differentiate epithelial subtypes.
DOI: 10.6084/m9.figshare.21789020.v1
title: Supplementary Material for: A Phase I Study to Evaluate the Safety and Pharmacokinetics of SHR0302 Base Ointment in Healthy Adult Volunteers

description: Introduction: SHR0302 is a highly selective JAK1 inhibitor. This study aims to investigate the safety, tolerability, and pharmacokinetics of single- and multiple-dose topical skin application of SHR0302 base ointment in healthy adult subjects. Methods: This phase I clinical trial (registration number: CTR20192188) consisted of two parts. Part 1 was a single-dose ascending study with four dose levels in 32 healthy Australian adults (eight subjects in each dose group). All Australian subjects were randomized 3:1 to a single-dose topical skin application of SHR0302 base ointment or placebo. The dose escalated from 1% SHR0302 base ointment on 3% of body surface area (BSA) to 2% SHR0302 base ointment on 20% of BSA. Part 2 combined single- and multiple-dose-ascension studies with two dose levels in 20 healthy Chinese adults (10 subjects in each dose group). All Chinese subjects were randomized 4:1 to a combination of single and multiple doses for consecutive 10 days of topical application of 1% SHR0302 base ointment on 20% BSA or 2% SHR0302 base ointment on 20% BSA. The safety and pharmacokinetics of the SHR0302 base ointment were evaluated. Results: The incidence of treatment-emergent adverse events (TEAEs) in both parts was comparable between the SHR0302 base ointment group and the vehicle group (Part 1:33.3% vs. 37.5%; Part 2: 56.3% vs. 75.0%). All TEAEs were transient, recovered, and equally well-tolerated in the two racial groups. The overall absorption of the SHR0302 base ointment was slow after topical application, with Tmax&gt;10 h. After a single dose of the SHR0302 base ointment, drug exposure in healthy Australian and Chinese subjects increased non-linearly with the increase in the administration area and drug content. Drug exposure increased in a less-than-dose-proportional manner within the dose range tested. Due to differences in the clinical practice of topical application, the Tmax of the drug in Australian subjects was earlier than in Chinese subjects, but the overall extent of absorption seemed comparable in Australian and Chinese subjects (with comparable AUC0-t). Conclusion: The SHR0302 base ointment (either single or multiple doses) was well tolerated and safe, with no racial disparity.
DOI: 10.6084/m9.figshare.21975515.v1
title: Supplementary Material for: Piceatannol protects against high glucose-induced injury of renal tubular epithelial cells via regulating carbonic anhydrase 2

description: Introduction: We here evaluated the efficacy of piceatannol (PIC) in high glucose (HG)-induced injury of renal tubular epithelial cells HK-2. Methods: After the establishment of HG-induced cell injury model and the treatment with PIC at both high and low concentrations and/or Acetazolamide (ACZ, the inhibitor of carbonic anhydrase 2 (CA2)), MTT and flow cytometry assays were carried out to confirm the viability and apoptosis of HK-2 cells. The levels of oxidative stress markers lactate dehydrogenase (LDH), malondialdehyde (MDA), and reactive oxygen species (ROS), the ratio of glutathione/oxidized glutathione (GSH/GSSG), and the CA2 activity were determined. Both quantitative reverse-transcription polymerase chain reaction and Western blot were used to calculate the expressions of CA2 (the predicted target gene of PIC via intersecting the data from bioinformatic analyses), and AKT pathway- (Phosphatase and tensin homolog (PTEN), phosphorylated (p)-AKT, AKT) and apoptosis-related proteins (Bcl-2 and cleaved caspase-3). Results: HG suppressed cell viability and the levels of GSH/GSSG ratio, CA2, pThr308-AKT/AKT, pSer473-AKT/AKT, and Bcl-2, while promoting cell apoptosis, the levels of LDH, MDA, and ROS and the expressions of PTEN and cleaved caspase-3. All effects of HG were reversed by PIC at a high concentration. CA2 was predicted and identified as the target of PIC. In HG-treated HK-2 cells, additionally, ACZ reversed the effects of PIC on the viability, apoptosis, and the levels of both oxidative stress markers and AKT pathway- and apoptosis-related factors. Conclusion: PIC protects against HG-induced injury of HK-2 cells via regulating CA2.
DOI: 10.6084/m9.figshare.24781446.v1
title: Supplementary Material for: Recurrent mutations in Refractory/Relapsed Diffuse Large B cell Lymphoma by targeted gene sequencing

description: Introduction-Whole genome sequencing of diffuse large B-cell lymphoma [DLBCL] has identified recurrent mutations involved in pathogenesis and potentially affecting response to therapy. In this pilot study, a targeted gene panel was created to identify mutations associated with relapse/refractoriness.
Material and methods- A 14-gene targeted panel was designed to sequence thirteen patients who were in remission and nine eight cases that had relapsed/refractory to treatment. A paired diagnostic biopsy and a relapse biopsy were sequenced to find genes repeatedly altered in relapse. 
Results- A total of 751 nonsynonymous and truncating mutations were identified. Truncated mutations in NOTCH1, TNFAIP3, and CD58 were associated with poor treatment outcomes. In cases that did not respond to treatment, a high number of mutations were found in the EZH2 gene, followed by the DNA-binding domain of TP53 and MYD88. Termination mutations in the intracellular domain of NOTCH were found in 75% of non-responsive cases. Co-occurrence of loss of function mutations of TNFAIP3 and missense mutations in MYD88 was associated with a non-responsive cohort. 
Discussion-The study highlights mutations associated with chemotherapeutic response in DLBCL with implications for initial diagnostic biopsy response prediction.
DOI: 10.6084/m9.figshare.25620519.v2
title: Small mammal visits to TRASH-Cams

description: Describes the number of visits (foraging bouts) made by small mammals to seed removal stations in a temperate deciduous forest (Hamilton College Experimental Forest.Common variables:<br>Collection.date: describes the month data were collected (0 = October, 2 = December, 3 = January, 6 = April)<br>Site: Categorical variable for plot (14 levels)Species: Categorical variable describing the identity of three species of small mammals (Peromyscus spp., Tamiasciurus hudsonicus, Tamias striatus)<br>Visit data variables:<br>Visit.count: Numerical data describing the number of visits by each speciesID: A unique row ID to account for overdispersion in dataCamera data variables:<br>Tray: Unique ID for seed depotVideo.number: A unique numerical id for each video<br>Date: Date video was recordedTemperature: Air temperature at time of video recording<br>Time.start: The time at which a video started (24 hour clock)Video.length: Length of video in seconds<br>Lonicera.eaten: Number of Lonicera spp. seeds eaten during the visit
DOI: 10.17632/bwf77pf2yw
title: Analysis of the reports from action research on using virtual design studio in architectural design education

description: This dataset is the qualitative analysis of written reports on what happened, said, and showed in a virtual design studio (VDS). The analysis was used in an action research project that intended to investigate the characteristics of a successful action plan for architectural design teaching in VDS. The research had six cycles. The documents in the file (the file is a bundle export of Atlas.ti software) are grouped based on the cycles. Each document went through three phases of open, axial, and selective coding.
DOI: 10.17632/zv6knkwkkr
title: GUHPC database

description: Data for predicting the compressive strength of green ultra-high performance concrete
DOI: 10.21233/2nby-qj91
title: Lake Biwa, North Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, North Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.19953008.v5
title: Interdisciplinary Water Risk Assessment Framework for Ontario, Canada

description: This interdisicplinary water risk assessment framework is the primary output of our study entitled "<strong>Developing a novel interdisciplinary water risk assessment framework for sustainable water management in Ontario, Canada". </strong> It consists of six water risk databases with the data and final ratings assessed for each of the 38 sub-watersheds investigated in this study under each indicator. The complete methodological details, analysis scales, and primary data sources used to construct the 6 databases are provided in the main article. The secondary data used in this framework is publicly available online thus maintaining compliance with Article 2.2 that grants exemption from the Research Ethics Board Review. The sources have been provided in the main article.
DOI: 10.6084/m9.figshare.25659474.v1
title: Interview Transcripts for: A Roadmap For A Metaverse-based Digital Governance: A Case Study Of The Gambia

description: Data was collected through online interviews on the topic: A Roadmap For A Metaverse-based Digital Governance: A Case Study Of The Gambia
DOI: 10.6084/m9.figshare.6728399.v2
title: Wild bee abundance map for 49 states

description: The zip file has 49 states' folders. Each folder has three different raster image files: 1. wild bee abundance index, 2. floral resource availability index, 3. nest resource availability index. PNAS_BEE_MAP_SDE folder has 49 states' bee abundance uncertainty layers (Fig1 B). Each file was generated using InVEST crop pollination model with 2013 CDL data and expert opinion. Wild bee abundance map is published at PNAS 2016 (Koh et al).
DOI: 10.6084/m9.figshare.1243152.v1
title: دراسة لإنتاج خزف الأسنان الظليل

description: Opaque Dental Porcelain
DOI: 10.6084/m9.figshare.6031190.v3
title: Genome-scale DNA sequence data and the evolutionary history of placental mammals

description: The genomic data set is comprised of the coding DNA sequences of 5162 loci from 90 vertebrate species, including 82 mammals.
DOI: 10.6084/m9.figshare.12830564.v2
title: Body mass by species_DOetal.csv

description: Body mass is one of the most important phenotypic attributes in animal ecology and life history. This trait is widely used in the fields of ecology and macroevolution, since it influences physiology, morphological functions, as well as a myriad of ecological and social interactions. In this data set, our aim was to gather a comprehensive bird and mammal body mass data set from northern South America. We report body mass, discriminated by sex, for 42,022 individual birds and 7,441 mammals representing 1317 bird species (69% of Colombia’s avifauna) and 270 mammal species (51% of Colombian mammals) from the Neotropics. The data was sourced from vouchers collected between 1942 and 2020 and from individuals captured and released at banding stations over the last two decades for birds (2000 – 2020) and the last decade for mammals (2010 – 2020), by ten research groups and institutions in Colombia. This data set fills gaps identified in other similar databases, as it focuses on northern South America, a highly diverse Neotropical region often underrepresented in morphological data sets. We provide wide taxonomic coverage for studies interested in information both at regional and local scales.<br>
DOI: 10.6084/m9.figshare.27314079.v1
title: Supplementary Material for: Unveiling a Rarity: First Instance of UTI Caused by Corynebacterium tuberculostearicum in India

description: Introduction - Coynebacterium species other than C.diphtheriae are being continuously reported as pathogens. 
Case presentation - A patient visited the Urology Outpatient Department of a tertiary care centre in India reporting lower abdominal pain, urinary incontinence, and intermittent weak urine flow persisting for 12 years, intensifying over the last 15 days. She also experienced urgency, straining, weak stream, and incomplete voiding, along with a previous fever episode. The patient had a medical record of multiple urethral dilations and surgeries since 2014, with the most recent urethral dilatation in July 2023. Diagnostic tests revealed a thickened bladder with notable post-void residual urine. Uroflowmetry indicated obstructive uropathy. Urine analysis exhibited elevated pus cells, epithelial cells, red blood cells, and abundant bacilli. Corynebacterium tuberculostearicum was identified through MALDI-TOF MS following three pure growths of Gram-positive bacilli in urine cultures. The organism showed sensitivity to cotrimoxazole and tetracyclines. Treatment with doxycycline significantly improved the symptoms.
DOI: 10.17632/nsjggt7tyz
title: Kesar Mango

description: Image dataset of Kesar mango from Navsai, south Gujarat, India. Used for grading and classification experiments. Graded based on shape (well shaped, deformed), size (small, medium, big) and maturity (unripe, partially ripe, ripe). For more details call - +91 9586113399.
DOI: 10.6084/m9.figshare.15090162.v1
title: Molecular docking files

description: Determination of Fluoroquinolones binding mode with OqxB protomer/monomer. All input, output files of Schrodinger Glide molecular docking as well as protocol included in the directory
DOI: 10.6084/m9.figshare.22223911.v1
title: Validation Samples for SFAC

description: The 2,072 samples of secondary and 3000 samples of stable forest, respectively were used to assess the accuracy of the results produced by each algorithm and ensemble. Samples for validation were selected randomly from the 7th National Forest Resources Inventory (NFRI) and were compared to the secondary forest maps produced above. The candidate points were visually examined using “Landsat Time Series Explorer”, a shared Application on GEE (https://jstnbraaten.users.earthengine.app/view/landsat-timeseries-explorer). In addition, historical imagery from Google Earth (https://earth.google.com/), GF-6 panchromatic/multispectral (PMS) images (a high-resolution Chinese satellite) (https://data.cresda.cn/#/2dMap) helped to distinguish stable and secondary forest samples. A total of 2,072 validation samples of secondary forest age ranging from 0 to 34 were defined by the re-interpreted approach mentioned above. Over 3,000 candidates of stable forests were systematically sampled from stable forest maps for validation. The classification of these samples of stable forest was ensured by filtering through many public land cover products. As shown in Table 1, these datasets included AGLC-2000-2015, GLC_FCS, FNF, GLC, CLUD, and GFCC. The categorization of the samples as stable forest was ensured by processing using Python, ArcGIS 10.6, and GEE. The 3,000 samples of the stable forest were then completed after manually removing pixels at imperfect sites. The value 1 of class in the data presents the secondary forest, value 0 of class presents the stable forest samples.
DOI: 10.6084/m9.figshare.25416769.v1
title: Data.xlsx

description: Research adata screen-h
DOI: 10.17632/zhb728dc4z
title: Birdsong rhythm: Onsets/intervals of a zebra finch song corpus and 3 thrush nightingale song corpora

description: ZEBRA FINCH DATA: file "IntervalData_ZebraFinch_corpus.mat" This file contains variable "ZebraFinch_intervals_ms": A vector of syllable onset-onset intervals of zebra finch song in ms. NAN entries mark boundaries of singing bouts. Song is from 93 captive zebra finches recorded at the Rockefeller field center in Millbrook, NY. Details are described in file "METHODS4IntervalData_processing of birdsong.pdf". THRUSH NIGHTINGALE DATA: file "IntervalData_ThrushNightingale_3corpora.mat" This file contains the following datasets: Corpus 1 - full song dataset: "ThrushNightingaleSongs_intervals_ms": vector of syllable onset-onset intervals of thrush nightingale song. NAN entries mark song boundaries. Songs are a subset of 45 recordings obtained from the publicly available birdsong library http://www.xeno-canto.org. Identifiers of the xeno-canto recordings are provided in the file "Pointers_to_xeno-canto_data.mat". Corpus 2 - stable rhythm dataset: "ThrushNightingaleStableRhythms_intervals_ms", a subset of Corpus 1 onset-onset intervals. They include only ‘stable rhythms’, i.e. song epochs with stably repeated interval dyads. A description of how this dataset was generated is provided in the file "METHODS4IntervalData_processing of birdsong.pdf". Corpus 3 - "same syllable type" dataset: "ThrushNightingaleSameSyllableEpochs_intervals_ms": A vector of syllable onset-onset intervals of trains of same-syllable repetitions from the same 45 xeno-canto recordings underlying Corpus 1. Same-syllable epochs were manually identified as described in file "METHODS4IntervalData_processing of birdsong.pdf". "ThrushNightingale_SameSyllableEpochs_onsets_ms": same dataset, onset times in ms, from the beginning of each same-note train.
DOI: 10.6084/m9.figshare.19335797.v1
title: Data of Research on the Improvement of the RRT algorithm in path planning for cooperative robot

description: Data of Research on the Improvement of the RRT algorithm in path planning for cooperative robot
DOI: 10.6084/m9.figshare.25466263.v1
title: (Rawdata) How do Spanish educational researchers use X's platform to promote the dissemination of scientific knowledge: a descriptive study: a descriptive study

description: Rawdata used in the article 'How do Spanish educational researchers use X's platform to promote the dissemination of scientific knowledge: a descriptive study', from the project Comscienciaeduspain (FCT-20-15761), executed with the collaboration of the Spanish Foundation for Science and Technology – Ministry of Science and Innovation.
DOI: 10.6084/m9.figshare.24261232.v1
title: Leader vs the Party Dilemma: The Case of a Party Rebirth in Czechia - Replication Data

description: Replication data for the article Leader vs the Party Dilemma: The Case of a Party Rebirth in Czechiacvvm_filter.csv and okamura_cvvm.csv contain survey data used for the analysis of electoral behaviour.PSRK13_21.xlsx contains the results of preferential voting for the Czech Parliamentary elections in 2013 and 2021
DOI: 10.17632/6tv48c4tvr
title: Codes and resources for BEST

description: This dataset provides the code required for the BEST algorithm, the raw results obtained from applying the BEST algorithm, and the program code necessary for processing these raw results.