cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.872396
title: Insights fromsodium into the impacts of elevated pCO2 and temperature on bivalve shell formation

description: Ocean acidification and warming are predicted to affect the ability of marine bivalves to build their shells, but little is known about the underlying mechanisms. Shell formation is an extremely complex process requiring a detailed understanding of biomineralization processes. Sodium incorporation into the shells would increase if bivalves rely on the exchange of Na+/H+ to maintain homeostasis for shell formation, thereby shedding new light on the acid-base and ionic regulation at the calcifying front. Here, we investigated the combined effects of seawater pH (8.1, 7.7 and 7.4) and temperature (16 and 22 °C) on the growth and sodium composition of the shells of the blue mussel, Mytilus edulis, and the Yesso scallop, Patinopecten yessoensis. Exposure of M. edulis to low pH (7.7 and 7.4) caused a significant decrease of shell formation, whereas a 6 °C warming significantly depressed the rate of shell growth in P. yessoensis. On the other hand, while the amount of Na incorporated into the shells of P. yessoensis did not increase in acidified seawater, an increase of Na/Cashell with decreasing pH was observed in M. edulis, the latter agreeing well with the aforementioned hypothesis. Moreover, a combined analysis of the shell growth and sodium content provides a more detailed understanding of shell formation processes. Under acidified conditions, mussels may maintain more alkaline conditions favorable for calcification, but a significant decrease of shell formation indicates that the mineralization processes are impaired. The opposite occurs in scallops; virtually unaffected shell growth implies that shell mineralization functions well. Finding of the present study may pave the way for deciphering the mechanisms underlying the impacts of ocean acidification and warming on bivalve shell formation.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-02-16.
description: Supplement to: Zhao, Liqiang; Schöne, Bernd R; Mertz-Kraus, Regina; Yang, Feng (2017): Insights from sodium into the impacts of elevated pCO2 and temperature on bivalve shell formation. Journal of Experimental Marine Biology and Ecology, 486, 148-154
DOI: 10.1594/pangaea.969034
title: Seawater carbonate chemistry and mortality, growth, and net calcification rates of sea urchin Echinus esculentus

description: Here we evaluate the biological response (mortality, growth and net calcification rates) of a marine calcifier, the larvae of the sea urchin Echinus esculentus, to different levels of variability of pCO2/pH imposed in the absence or presence of seagrass and under 4 different pHs, relevant in the context of present natural variability and future ocean acidification.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-06-14.
DOI: 10.1594/pangaea.825108
title: Light availability determines susceptibility of reef building corals to ocean acidification

description: Elevated seawater pCO2, and in turn ocean acidification (OA), is now widely acknowledged to reduce calcification and growth of reef building corals. As with other environmental factors (e.g., temperature and nutrients), light availability fundamentally regulates calcification and is predicted to change for future reef environments alongside elevated pCO2 via altered physical processes (e.g., sea level rise and turbidity); however, any potential role of light in regulating the OA-induced reduction of calcification is still unknown. We employed a multifactorial growth experiment to determine how light intensity and pCO2 together modify calcification for model coral species from two key genera, Acropora horrida and Porites cylindrica, occupying similar ecological niches but with different physiologies. We show that elevated pCO2 (OA)-induced losses of calcification in the light (G L) but not darkness (G D) were greatest under low-light growth conditions, in particular for A. horrida. High-light growth conditions therefore dampened the impact of OA upon G L but not G D. Gross photosynthesis (P G) responded in a reciprocal manner to G L suggesting OA-relieved pCO2 limitation of P G under high-light growth conditions to effectively enhance G L. A multivariate analysis of past OA experiments was used to evaluate whether our test species responses were more widely applicable across their respective genera. Indeed, the light intensity for growth was identified as a significant factor influencing the OA-induced decline of calcification for species of Acropora but not Porites. Whereas low-light conditions can provide a refuge for hard corals from thermal and light stress, our study suggests that lower light availability will potentially increase the susceptibility of key coral species to OA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2013-12-31.
description: Supplement to: Suggett, David J; Dong, L F; Lawson, Tracy; Lawrenz, E; Torres, L; Smith, David J (2012): Light availability determines susceptibility of reef building corals to ocean acidification. Coral Reefs, 32(2), 327-337
DOI: 10.1594/pangaea.773790
title: Seawater carbonate chemistry and benthic microalgae diversity near Volcano Island, Italy, 2011

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
DOI: 10.1594/pangaea.862529
title: Effects of in situ CO2 enrichment on structural characteristics, photosynthesis, and growth of the Mediterranean seagrass Posidonia oceanica

description: Seagrass is expected to benefit from increased carbon availability under future ocean acidification. This hypothesis has been little tested by in situ manipulation. To test for ocean acidification effects on seagrass meadows under controlled CO2/pH conditions, we used a Free Ocean Carbon Dioxide Enrichment (FOCE) system which allows for the manipulation of pH as continuous offset from ambient. It was deployed in a Posidonia oceanica meadow at 11 m depth in the Northwestern Mediterranean Sea. It consisted of two benthic enclosures, an experimental and a control unit both 1.7 m**3, and an additional reference plot in the ambient environment (2 m**2) to account for structural artifacts. The meadow was monitored from April to November 2014. The pH of the experimental enclosure was lowered by 0.26 pH units for the second half of the 8-month study. The greatest magnitude of change in P. oceanica leaf biometrics, photosynthesis, and leaf growth accompanied seasonal changes recorded in the environment and values were similar between the two enclosures. Leaf thickness may change in response to lower pH but this requires further testing. Results are congruent with other short-term and natural studies that have investigated the response of P. oceanica over a wide range of pH. They suggest any benefit from ocean acidification, over the next century (at a pH of 7.7 on the total scale), on Posidonia physiology and growth may be minimal and difficult to detect without increased replication or longer experimental duration. The limited stimulation, which did not surpass any enclosure or seasonal effect, casts doubts on speculations that elevated CO2 would confer resistance to thermal stress and increase the buffering capacity of meadows.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-07-01.
description: Supplement to: Cox, T Erin; Gazeau, Frédéric; Alliouane, Samir; Hendriks, Iris; Mahacek, Paul; Le Fur, Arnaud; Gattuso, Jean-Pierre (2016): Effects of in situ CO2 enrichment on structural characteristics, photosynthesis, and growth of the Mediterranean seagrass Posidonia oceanica. Biogeosciences, 13(7), 2179-2194
DOI: 10.1594/pangaea.833768
title: Differential response of two Mediterranean cold-water coral species to ocean acidification

description: Cold-water coral (CWC) reefs constitute one of the most complex deep-sea habitats harboring a vast diversity of associated species. Like other tropical or temperate framework builders, these systems are facing an uncertain future due to several threats, such as global warming and ocean acidification. In the case of Mediterranean CWC communities, the effect may be exacerbated due to the greater capacity of these waters to absorb atmospheric CO2 compared to the global ocean. Calcification in these organisms is an energy-demanding process, and it is expected that energy requirements will be greater as seawater pH and the availability of carbonate ions decrease. Therefore, studies assessing the effect of a pH decrease in skeletal growth, and metabolic balance are critical to fully understand the potential responses of these organisms under a changing scenario. In this context, the present work aims to investigate the medium- to long-term effect of a low pH scenario on calcification and the biochemical composition of two CWCs from the Mediterranean, Dendrophyllia cornigera and Desmophyllum dianthus. After 314 d of exposure to acidified conditions, a significant decrease of 70 % was observed in Desmophyllum dianthus skeletal growth rate, while Dendrophyllia cornigera showed no differences between treatments. Instead, only subtle differences between treatments were observed in the organic matter amount, lipid content, skeletal microdensity, or porosity in both species, although due to the high variability of the results, these differences were not statistically significant. Our results also confirmed a heterogeneous effect of low pH on the skeletal growth rate of the organisms depending on their initial weight, suggesting that those specimens with high calcification rates may be the most susceptible to the negative effects of acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-03.
description: Supplement to: Movilla, Juancho; Orejas, Covadonga; Calvo, Eva; Gori, Andrea; Lopez-Sanz, Angel; Grinyó, Jordi; Domínguez-Carrió, Carlos; Pelejero, Carles (2014): Differential response of two Mediterranean cold-water coral species to ocean acidification. Coral Reefs, 33(3), 675-686
DOI: 10.1594/pangaea.924364
title: Seawater carbonate chemistry and gene expression and heart rates of intertidal limpet

description: Understanding physiological responses of organisms to warming and ocean acidification is the first step towards predicting the potential population- and community-level ecological impacts of these stressors. Increasingly, physiological plasticity is being recognized as important for organisms to adapt to the changing microclimates. Here, we evaluate the importance of physiological plasticity for coping with ocean acidification and elevated temperature, and its variability among individuals, of the intertidal limpet Cellana toreuma from the same population in Xiamen. Limpets were collected from shaded mid-intertidal rock surfaces. They were acclimated under combinations of different pCO2 concentrations (400 and 1000 ppm, corresponding to a pH of 8.1 and 7.8) and temperatures (20 and 24 °C) in a short-term period (7 days), with the control conditions (20 °C and 400 ppm) representing the average annual temperature and present-day pCO2 level at the collection site. Heart rates (as a proxy for metabolic performance) and expression of genes encoding inducible and constitutive heat-shock proteins (hsp70 and hsc70) at different heat-shock temperatures (26, 30, 34, and 38 °C) were measured. Hsp70 and Hsc70 play important roles in protecting cells from heat stresses, but have different expression patterns, with Hsp70 significantly increased in expression during stress and Hsc70 constitutively expressed and only mildly induced during stress. Analysis of heart rate showed significantly higher temperature coefficients (Q10 rates) for limpets at 20 °C than at 24 °C and post-acclimation thermal sensitivity of limpets at 400 ppm was lower than at 1000 ppm. Expression of hsp70 linearly increased with the increasing heat-shock temperatures, with the largest slope occurring in limpets acclimated under a future scenario (24 °C and 1000 ppm pCO2). These results suggested that limpets showed increased sensitivity and stress response under future conditions. Furthermore, the increased variation in physiological response under the future scenario indicated that some individuals have higher physiological plasticity to cope with these conditions. While short-term acclimation to reduced pH seawater decreases the ability of partial individuals against thermal stress, physiological plasticity and variability seem to be crucial in allowing some intertidal animals to survive in a rapidly changing environment.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-30.
DOI: 10.1594/pangaea.941921
title: Seawater carbonate chemistry and photoprotective strategies controlling electron flow through PSII and PSI in red macroalgae Pyropia yezoensis

description: While intertidal macroalgae are exposed to drastic changes in solar photosynthetically active radiation (PAR) and ultraviolet radiation (UVR) during a diel cycle, and to ocean acidification (OA) associated with increasing CO2 levels, little is known about their photosynthetic performance under the combined influences of these drivers. In this work, we examined the photoprotective strategies controlling electron flow through photosystems II (PSII) and photosystem I (PSI) in response to solar radiation with or without UVR and an elevated CO2 concentration in the intertidal, commercially important, red macroalgae Pyropia (previously Porphyra) yezoensis. By using chlorophyll fluorescence techniques, we found that high levels of PAR alone induced photoinhibition of the inter-photosystem electron transport carriers, as evidenced by the increase of chlorophyll fluorescence in both the J- and I-steps of Kautsky curves. In the presence of UVR, photoinduced inhibition was mainly identified in the O2-evolving complex (OEC) and PSII, as evidenced by a significant increase in the variable fluorescence at the K-step (Fk) of Kautsky curves relative to the amplitude of FJ−Fo (Wk) and a decrease of the maximum quantum yield of PSII (Fv/Fm). Such inhibition appeared to ameliorate the function of downstream electron acceptors, protecting PSI from over-reduction. In turn, the stable PSI activity increased the efficiency of cyclic electron transport (CET) around PSI, dissipating excess energy and supplying ATP for CO2 assimilation. When the algal thalli were grown under increased CO2 and OA conditions, the CET activity became further enhanced, which maintained the OEC stability and thus markedly alleviating the UVR-induced photoinhibition. In conclusion, the well-established coordination between PSII and PSI endows P. yezoensis with a highly efficient photochemical performance in response to UVR, especially under the scenario of future increased CO2 levels and OA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-3-1.
DOI: 10.1594/pangaea.883559
title: Gross primary production, respiration, and net calcification in coral reef sediments of Heron Island Lagoon, Australia, determined by in situ benthic chamber incubations

description: Rates of gross primary production (GPP), respiration (R), and net calcification (Gnet) in coral reef sediments are expected to change in response to global warming (and the consequent increase in sea surface temperature) and coastal eutrophication (and the subsequent increase in the concentration of organic matter (OM) being filtered by permeable coral reef carbonate sediments). To date, no studies have examined the combined effect of seawater warming and OM enrichment on coral reef carbonate sediment metabolism and dissolution. This study used 22-hour in situ benthic chamber incubations to examine the combined effect of temperature (T) and OM, in the form of coral mucus and phytodetritus, on GPP, R, and Gnet in the permeable coral reef carbonate sediments of Heron Island lagoon, Australia. Compared to control incubations, both warming (+2.4 ºC) and OM increased R and GPP. Under warmed conditions, R was enhanced to a greater extent than GPP, resulting in a shift to net heterotrophy and net dissolution. Under both phytodetritus and coral mucus treatments, GPP was enhanced to a greater extent than R, resulting in a net increase in GPP/R and Gnet. The combined effect of warming and OM enhanced R and GPP, but the net effect on GPP/R and Gnet was not significantly different from control incubations. These findings show that a shift to net heterotrophy and dissolution due to short-term increases in seawater warming may be countered by a net increase GPP/R and Gnet due to short-term increases in nutrient release from OM.
description: Supplement to: Lantz, Coulson A; Schulz, Kai Georg; Stoltenberg, Laura; Eyre, Bradley D (2017): The short-term combined effects of temperature and organic matter enrichment on permeable coral reef carbonate sediment metabolism and dissolution. Biogeosciences, 14(23), 5377-5391
DOI: 10.1594/pangaea.920209
title: Seawater carbonate chemistry and respiration rates, protein and lipid content of Balanophyllia elegans

description: Ocean acidification (OA), the global decrease in surface water pH from absorption of anthropogenic CO2, may put many marine taxa at risk. However, populations that experience extreme localized conditions, and are adapted to these conditions predicted in the global ocean in 2100, may be more tolerant to future OA. By identifying locally adapted populations, researchers can examine the mechanisms used to cope with decreasing pH. One oceanographic process that influences pH, is wind driven upwelling. Here we compare two Californian populations of the coral Balanophyllia elegans from distinct upwelling regimes, and test their physiological and transcriptomic responses to experimental seawater acidification. We measured respiration rates, protein and lipid content, and gene expression in corals from both populations exposed to pH levels of 7.8 and 7.4 for 29 days. Corals from the population that experiences lower pH due to high upwelling, maintained the same respiration rate throughout the exposure. In contrast, corals from the low upwelling site had reduced respiration rates, protein content, and lipid‐class content at low pH exposure, suggesting they have depleted their energy reserves. Using RNA‐Seq, we found that corals from the high upwelling site upregulated genes involved in calcium ion binding and ion transport, most likely related to pH homeostasis and calcification. In contrast, corals from the low upwelling site downregulated stress response genes at low pH exposure. Divergent population responses to low pH observed in B. elegans highlight the importance of multi‐population studies for predicting a species' response to future OA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07.
DOI: 10.1594/pangaea.873830
title: Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Magnetic Island profiles

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.
DOI: 10.1594/pangaea.873831
title: Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Seawater carbonate chemistry

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.
DOI: 10.1594/pangaea.920870
title: Intracellular pH measurements in the Pacific oyster (Crassostrea gigas)

description: Intracellular pH was measured using the dye BCECF (live cell imaging) in the mantle epithelial cells of the Pacific oyster (C. gigas). Intracellular pH was measured under the presence of modified seawater solutions (low sodium, low bicarbonate) and specific inhibitors for acid-base proteins were used. Value are presented as means.