cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/c10b-an63
title: The effects of marine heatwaves on a coral reef snapper: Insights into aerobic and anaerobic physiology and recovery potential 

description: <p><strong>Background:</strong><br />Marine heatwaves (MHWs) are increasing in frequency and intensity. Coral reefs are particularly susceptible to MHWs, which cause mass coral bleaching and mortality. However, little is known about how MHWs affect coral reef fishes. Here we investigated how MHWs affect the physiology of a coral reef mesopredator, Lutjanus carponotatus.<br /><br /><strong>Methods:</strong><br />Specifically, we exposed mature adults to two different MHW intensities, +1&deg;C (29.5&deg;C) and +2&deg;C (30.5&deg;C) and measured physiological performance at 2- and 4-weeks of exposure, and at 2-weeks post-exposure. At these time points we measured whole-organism physiological attributes (resting and capture oxygen consumption, and recovery time), excess post-exercise oxygen consumption (EPOC), and associated biochemical markers in the blood (baseline lactate, post-capture lactate, glucose, haemoglobin levels and haematocrit proportion).</p>
<p><strong>This data record contains:</strong></p>
<p>3 x .csv files containing respirometry, recovery time, blood, and temperature preference data. Also in .ods format.</p>
<p> </p>
DOI: 10.4225/28/5a77bd4e01e54
title: Raw olfactory data for "Heritability of behavioural tolerance to high CO2 in a coral reef fish is masked by non-adaptive phenotypic plasticity"
DOI: 10.4225/28/588ebc2ca00e2
title: Potential allergens of the Pacific Oyster (Crassostrea gigas)
DOI: 10.25903/ekvn-8y45
title: Surveys on the importance of coastal ecosystem services in developing coastal communities, Papua New Guinea
DOI: 10.25903/5e8548786bbf4
title: Data for: Do market and trust contexts spillover into public goods contributions? Evidence from experimental games in Papua New Guinea

description: <p class="MsoNormal"><span style="mso-ansi-language: EN-US;">This dataset contains data from three different economic games (Public Goods Game, Trust Game, and Trade Game) conducted in Ahus Island (PNG), the data was collected by Dr. Cristian Rojas and Prof. Joshua Cinner (and team) of James Cook University in 2018.</span></p>
DOI: 10.4225/28/5a8281700c246
title: Data from: Lonnstedt OM, McCormick MI (2015) Damsel in distress: captured damselfish prey emit chemical cues that attract secondary predators and improve escape chances. Proceedings of the Royal Society London B 282:20152038
DOI: 10.15468/dl.tg4m6p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.968355 -36.84511, 142.968355 -36.851848, 142.977338 -36.851848, 142.977338 -36.84511, 142.968355 -36.84511))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075348-240626123714530/datasets/export for details.
DOI: 10.25903/kv35-q944
title: Silver-Lipped Pearl Oyster Advanced Animal Breeding (POAAB)

description: <p>Data related to a series of ARC Linkage grants focusing on developing advanced genetic breeding programs for the silver-lipped pearl oyster, <em>Pinctada maxima</em>.</p>
DOI: 10.25903/q81t-7t34
title: Tommy Creek Domain geochronology data

description: <p><strong>Project summary:</strong> The aim of this industry initiated project is to characterise the genesis of base metal sulphide mineralisation in the area of the Tommy Creek Prospect. This mineralisation does not appear to exhibit many of the characteristics of typical Cu-Au deposits of the region, and understanding its origins will be key in determining the economic potential of the area. The Tommy Creek Domain also represents an under researched region of the Mount Isa Inlier with unique stratigraphy, young ages, and a complex magmatic and structural history.</p>
<p><strong>Data description: </strong>Geochronology data i.e. processed U-Pb and trace element data from Zircon and Titanite, obtained via Laster Ablation ICPMS analysis.</p>
<p>The dataset consists of 2 MS Excel (.xlsx) workbooks containing information about the samples (1 data sheet) and the data (5 data sheets) presented as batches determined by the analysis and processing campaigns in which they were collected.</p>
<p>A detailed 'Zircon Analysis Report' (PDF) is also available and includes the full data methods and figures for:</p>
<ol>
<li>Tommy Creek LA-ICPMS Zircon Geochronology, June 2018</li>
<li>Tommy Creek LA-ICPMS Titanite and Zircon Geochronology, Oct-Nov 2018</li>
<li>Tommy Creek LA-ICPMS Zircon Geochronology, June 2019</li>
<li>Tommy Creek LA-ICPMS Zircon Geochronology, August 2019</li>
</ol>
DOI: 10.4225/28/5731691b9c95b
title: In situ behavioural observation of juvenile Pomacentrus amboinensis in response to small motor boat noise
DOI: 10.25903/5b7ba53be6fac
title: Data for: McCormick MI, Ferrari MCO, Fakan E, Barry RP, Chivers DP (2018) Diet cues and their utility for risk assessment in degraded habitats


description: <p>Data from two field experiments that together represent one manuscript (submitted 2018)</p><p>Abstract [Related Publication]: Habitat degradation can alter community processes by changing the cues available to assess risk. Modifications to the composition of the benthic environment have been found to alter the chemical background through which chemical information passes. The change in coral reefs from live coral to algal-dominated seascapes has been shown to prevent some fish species from using chemical alarm cues to inform their risk of predation, although not all species are affected. Here, we examined whether chemically-mediated dietary information from predators can be used to label novel predators as a threat, whether their efficacy is modified by habitat degradation, and whether cues from prey species not affected by the change in chemistry associated with habitat degradation can be used to mitigate the problem. Laboratory and field experiments showed that Ambon damselfish, Pomacentrus amboinensis, were able to learn the identity of individual novel predators from a cocktail of 3 predators using digestive products when the predators had been fed conspecifics of the prey species in the presence of water that had passed over live hard coral. This allows the labelling of predator identity to be greatly extended beyond the immediate capture and ingestion event. Fish that had the same learning opportunity in degraded water took more risk and died faster on habitat patches in the field. Ambon damselfish respond to chemical alarm cues from closely-related heterospecific P. nagasakiensis, both in live or degraded water, yet we failed to find behavioural evidence that they can use the congeneric diet odours to label predators. However, we did find a modest survival benefit under natural conditions, suggesting some limited learning occurred. Further work is necessary to investigate the role of chemical information redundancy among community members, as they provide insights into potential resilience mechanisms available to individuals facing environmental change.</p><p>Description [Key included in dataset]: Juvenile Pomacentrus amboinensis exposed to water from tanks that contained faeces of predators (combined moonwrasse, dottybacks, lizardfish predators) that has been fed P.amboinensis or P.nagakakiensis (congeneric) in water that has passed over Live or Dead-degraded Pocillopora damicornis hard coral in a header tank. Data is the behaviour and space use of lab conditioned P.amboinensis on patch reefs (Exp 2), and how these fish then respond to the odour of dottybacks (fed squid to avoid diet cues) that were delivered via a tube and syringe in the field (Exp 1).</p><p>Data consists of a spreadsheet with three sheets: a description and data for each of the two experiments; and a short video.</p><p>The full methodology is available in the publication shown in the Related Publications link below.<br></p>
DOI: 10.4225/28/5a7cd99860087
title: Dataset from: McCormick MI, Allan BJM (2016) Lionfish misidentification circumvents an optimised escape response by prey. Conservation Physiology 4:cow064
DOI: 10.4225/28/547e5e41f35b0
title: Beyond Symbiosis: Cleaner Shrimp Clean Up in Culture
DOI: 10.25903/5c1c71f11f3ba
title: StreetFighter controlled trials - Pedestrian

description: <p>Sensor detection accuracy test of the StreetFighter traffic sensor platform using controlled traffic.</p><p>This dataset contains the information specific to pedestrian testing.</p><p>The dataset contains recorded sensor events from the following sensors:</p><ul><li>1 Panasonic AMN33111J Narrow spot motion detection</li><li>2 HC-SR501 wide area motion detectors</li><li>1 LidarLite v1 lidar</li></ul><p>Each sensor was mounted at a position six metres above the road surface, facing downwards towards the road.</p><p>This dataset consists of the following folders/files:</p><ul><li>Overpass- Pedestrian Tests: 1 data file in OpenDocument (.ods) format (88 KB) - analysis of collected results</li><li>Pedestrian Events.zip: contains 159 compressed image files in JPEG (.jpg) format (3.3 MB) and a CSV file (TafficLog) (3 KB) - detections counted by computer vision</li><li>Data.zip: contains 18 files in comma-separated values (.csv) format and a metadata file in markdown (.md) format (80.3 KB) - data collected from each sensor over the course of testing. The markdown file (sensor data metadata) is also saved in PDF format and attached.</li></ul><p>The linked version includes the files listed above (Pedestrian Test Results.ods has been renamed as Overpass-Pedestrian tests.ods in the attached files) as well as:</p><ul><li>Raw.zip: contains 8 log files (.log) and a CSV file for wifi_devices-combined (114 KB)</li><li>Video.zip: contains 10 MOV (.mov) video files (7.2 GB)</li></ul>
DOI: 10.4225/28/55b59232dcaf4
title: Latitudinal trends in thermal traits in a clade of small reptilian ectotherms
DOI: 10.25903/5e9659dbca234
title: Data from 'Trophic innovations fuel reef fish diversification'

description: <p>This entry refers to Siqueira, Morais, Bellwood & Cowman 'Trophic innovations fuel reef fish diversification' published in the journal Nature Communications. It contains the curated dataset analysed in the study, along with R scripts and phylogenetic trees to reproduce the main results. More details can be found in the readme file.</p>
DOI: 10.25903/kt95-xz35
title: Wallace v2.0 Magnoliopsida: Habitat suitability distribution modelling for Magnoliopsida worldwide

description: <p>Climate change scenarios were sourced from the UK Met Office Hadley Centre for CMIP5 global climate models and scaled to 20km resolution. Species occurrence records were downloaded from GBIF. Maxent was used to model the habitat suitability distributions.<br /><a href="https://wallaceinitiative.org/">https://wallaceinitiative.org/</a></p>
DOI: 10.25903/rr0v-vf74
title: Photovoice data collection

description: The Lighthouse at Townsville Aboriginal and Islander Health Services (TAIHS) is a diversionary service working with young people who are at risk or high risk of offending in the Townsville community. Social work researchers from JCU and staff from the Lighthouse program were interested in creative ways of exploring the needs of service users and to develop a strengths based resource for the work with young people whose voices are sometimes missing in reports, and in policy, program and resource development (add references from above). Using photovoice as a research approach with service users at The Lighthouse was about enabling them to present their day to day lives and perspectives.

The participants in this study took photographs of places and objects that were meaningful to them and then explored their photos within focus group conversations using the SHOWeD method: “What do you See here? What is really Happening? How does this relate to Our lives? Why does this situation exist? What can we Do about it?” (Smith et al.,  2012, p. 6). A further objective was to develop a strength card resource with young people, based on their photographs and discussions. 

The tally of young people who took part in the photo excursions and the focus group yarning/discussions consisted of: 
·         24 separate individuals who attended the program: 12 females, 12 males
 
·         Between 5 and 11 participants attended per session
 
·         9 young people attended the focus groups discussions: 4 females, 5 males
 
The age range of the young people attending program sessions and focus groups was 10-17 years.


Software/equipment used to create/collect the data: 

Software/equipment used to manipulate/analyse the data:
DOI: 10.21227/8hrx-pd10
title: Automated Craniotomy Masking for Intraoperative Thermography

description: This dataset contains still thermal frames from thirty patients undergoing awake craniotomy for brain tumor resection. The data were used as part of a study on automated craniotomy masking, where the portion of the craniotomy image which contans the brain is identified. The data contains manually generated gold-standard masks, as well as masks created with the proposed method in "Automated Craniotomy Masking for Intraoperative Thermography".
DOI: 10.4225/28/58c62cb87ebfd
title: Physiological plasticity vs.inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish
DOI: 10.25903/5d54e90e5ce92
title: Carbonate chemistry data for kingfish experiment - Watson et al. 2018

description: <p>Abstract [Related Publication]:Ocean warming and acidification are serious threats to marine life; however, their individual and combined effects on large pelagic and predatory fishes are poorly understood. We determined the effects of projected future temperature and carbon dioxide (CO2) levels on survival, growth, morphological development and swimming performance on the early life stages of a large circumglobal pelagic fish, the yellowtail kingfish <em>Seriola lalandi</em>. Eggs, larvae and juveniles were reared in cross‐factored treatments of temperature (21 and 25°C) and pCO2 (500 and 985 μatm) from fertilisation to 25 days post hatching (dph). Temperature had the greatest effect on survival, growth and development. Survivorship was lower, but growth and morphological development were faster at 25°C, with surviving fish larger and more developed at 1, 11 and 21 dph. Elevated pCO2 affected size at 1 dph, but not at 11 or 21 dph, and did not affect survival or morphological development. Elevated temperature and pCO2 had opposing effects on swimming performance at 21 dph. Critical swimming speed (Ucrit) was increased by elevated temperature but reduced by elevated pCO2. Additionally, elevated temperature increased the proportion of individuals that responded to a startle stimulus, reduced latency to respond and increased maximum escape speed, potentially due to the more advanced developmental stage of juveniles at 25°C. By contrast, elevated pCO2 reduced the distance moved and average speed in response to a startle stimulus. Our results show that higher temperature is likely to be the primary driver of global change impacts on kingfish early life history; however, elevated pCO2 could affect critical aspects of swimming performance in this pelagic species. Our findings will help parameterise and structure fisheries population dynamics models and improve projections of impacts to large pelagic fishes under climate change scenarios to better inform adaptation and mitigation responses.</p><p>The full methodology is available in the publication shown in the Related Publications link below.</p>
DOI: 10.25903/y480-ff26
title: Sugarcane yield and soil properties in the Burdekin River Irrigation Area, Australia

description: <p>The data was collected to relate sugarcane yield to soil properties, especially sodicity and salinity. Seventeen sites in the Burdekin River Irrigation Area, Queensland, Australia, were selected based on known spatial variability in yield. At each site, a 3-row (4.5 m) wide strip of cane that cut across variable areas was identified. The strips were between 150 and 600 m long, and cane yield was measured in selected sections, each 20&plusmn;30 m long, using a weigh truck. In each section, soil was sampled in 0.125-m increments to 0.75 m depth and analysed for solution chemistry, exchangeable cations, nutrients, organic C, particle size distribution and dispersion index. Root distribution of sugarcane (lateral between rows, and to 1.2 m depth) was also measured on several soil types. The data set contains all the raw results.</p>
<p>Software/equipment used to create/collect the data: Microsoft Excel</p>
<p>Software/equipment used to manipulate/analyse the data: See Nelson and Ham (2000) Field Crops Research 66, 245-255, for analytical methods.</p>
DOI: 10.25903/8n7b-0110
title: Data from: Preceptor Training Program - Pre-training Needs Analysis 

description: <p>This data relates to a preceptor training needs analysis of key stakeholders which was conducted to inform the development of a pharmacist preceptor training program. The study involved sequential mixed methods and included a survey and interviews with pharmacist preceptors, a survey and interviews with pharmacy students and interviews with pharmacy academic staff.    </p>
<p>This dataset contains the results and data analysis of 55 preceptor surveys and 37 student surveys which were administered online through Qualtrics and analysed using SPSS (SPSS 27 Statistics for Windows, Armonk, NY: IBM Corp). It also contains the analysis data for 10 preceptor interviews, 9 academic staff interviews and 3 student focus groups (involving 9 students). The data were analysed by thematic analysis using NVivo (NVivo; QSR International Pty, Ltd, Version 12, 2018)</p>
<p>The data from this needs analysis provided information which was used to create a purpose-built training program for pharmacist preceptors at James Cook University.</p>
<p>This dataset includes:</p>
<ul>
<li>1 x SPSS file (.xlsx) containing survey data and analysis of the preceptor and student surveys</li>
<li>Copies of the preceptor and student surveys</li>
<li>Transcripts of preceptor and academic staff interviews and student focus groups</li>
<li>1 x NVivo (.nvp) analysis of preceptor and academic staff interviews and student focus group interviews.</li>
</ul>
<p>The resulting training program was developed online using a Blackboard Learning organizational site at James Cook University. The program was evaluated from the perspective of both preceptors and experiential placement students. The data for the program analysis is contained in a separate publication: <em>Preceptor Training program &ndash; Post-training analysis (under embargo)</em></p>
<p> </p>
DOI: 10.4225/28/58460fb90ea19
title: Increased pollinator habitat enhances cacao fruit set and predator conservation
DOI: 10.25903/kzmy-tt90
title: Temperature, Flowrate, and Comminution Data for Optimisation of Qcide® oil extraction and separation

description: <p>This data set contains:<br />1 MS Excel spreadsheet detailing the preparation of Qcide oil for Gas Chromatography. Oil distillation extracted at JCU during 2020.<br />1 MS Excel spreadsheet containing gas chromatography results from samples submitted to the JCU AAC during 2020.<br />1 MS Excel spreadsheet detailing temperature and flowrate experiments at JCU during Mar/Apr 2020. 5 experiments, biomass classification, steam distillation, solvent extraction, gas chromatography preparation.<br />1 MS Excel spreadsheet detailing temperature and flowrate experiments at JCU during Dec 2020. 4 experiments, biomass classification, steam distillation.<br />1 MS Excel spreadsheet detailing temperature, flowrate, and comminution experiments at JCU during 2021. 19 experiments, biomass classification, steam distillation.<br />2 MS Excel spreadsheets containing data and analysis for flowrate and comminution experiments. 14 experiments, biomass reduction and classification, steam distillation, gas chromatography and analysis, yield analysis.<br />1 MS Excel spreadsheet contain compiled data, yield analysis, and chemical analysis. Data from temperature, flowrate, and comminution experiments during 2020-2021. 26 experiments.</p>
DOI: 10.25903/zhfx-4847
title: Video footage: Dugong behaviour at an aggregation site in the Cap Goulvain region, New Caledonia

description: <p>Aerial and underwater footage of dugong aggregations on the fore reef shelf in Cap Goulvain, New Caledonia.<br />The footage was filmed by Martial Dosdane and Romain Laigle, and edited by Christophe Cleguer. </p>
<p>This dataset consists of a MP4 file (duration 02:41) available in both uncompressed (377 MB) and compressed (118 MB) formats.</p>
DOI: 10.15468/dl.r298g8
title: Occurrence Download

description: A dataset containing 832 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macaca silenus (Linnaeus, 1758)"
 ]
}

 The dataset includes 832 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075349-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4225/28/5b343a73f35f7
title: Data for PhD thesis Chapter 4: Cleaner shrimp clean farmed fish
DOI: 10.25903/5ef53d362b066
title: Native ant mutualist provisions more nitrogen than an invasive ant to an epiphytic ant-plant

description: <p>Data from a 15N pulse-chase experiment examining nitrogen uptake by the ant-plant <em>Myrmecodia beccarii</em> from two species of ant inhabitants: <em>Philidris cordata</em> and <em>Pheidole megacephala</em>.</p>
<p>The full methodology is available in the Open Access publication from the Related publications link below.</p>
DOI: 10.25903/7qws-e597
title: IoT Droplock source code and demonstration

description: <p>This record contains the code projects used to turn a commercial off the shelf smart padlock into an "IoT Droplock" - a hacked device designed to steal fingerprints. It also contains code projects for the IoT Droplock proof of concept, using a demonstrator that was custom-built from widely available components. Videos demonstrating both of these Droplocks are included in this record as well.</p>
<p>Software/equipment used to create/collect the data</p>
<p>Video software: Adobe Premiere, Panopto; Development software: VSCode, Git, Nordic Semiconductor nRF Toolkit, Wireshark, JADX, Ghidra, OpenOCD; Development hardware: STLink v2, LilyGO T-Display-S2, Waveshare capacitive fingerprint reader, TLL05A smart padlock</p>
<p>Software/equipment used to manipulate/analyse the data</p>
<p>Development software: VSCode, Git, Nordic Semiconductor nRF Toolkit, Wireshark, JADX, Ghidra, OpenOCD; Development hardware: STLink v2, nRF52840 Dongle</p>
DOI: 10.4225/28/570de13d9433e
title: accuCLIM Daily Weather Time Series: Accurate, high-resolution, mapped weather data for the Australian Wet Tropics World Heritage Area
DOI: 10.6084/m9.figshare.26767990
title: Data for "A Frequency-Agile Retrodirective Tag for Large-Scale Sub-Terahertz Data Backscattering"

description: This dataset contains the data from the nature communication manuscript "A Frequency-Agile Retrodirective Tag for Large-Scale Sub-Terahertz Data Backscattering "
DOI: 10.25903/dm0b-aa51
title: 1819 Bellingshausen expedition

description: <p>This dataset describes the 1819-1821 voyages of the Vostok under Captain Bellingshausen and the Miryni under Captain Lazarev<p>
<p>Software/equipment used to create/collect the data: Excel, JCU LIbraries<p>
<p>Software/equipment used to manipulate/analyse the data: TLCMap<p>
DOI: 10.6084/m9.figshare.26767990.v3
title: Data for "A Frequency-Agile Retrodirective Tag for Large-Scale Sub-Terahertz Data Backscattering"

description: This dataset contains the data from the nature communication manuscript "A Frequency-Agile Retrodirective Tag for Large-Scale Sub-Terahertz Data Backscattering "
DOI: 10.4225/28/5a0e7b1b3cc0e
title: Global gravity of coral reefs spatial layer