cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jdd5j5tndv.1
title: Tcruzi-VMT: Video Microscopy and Motion Trajectories Dataset

description: The Tcruzi-VMT dataset provides a collection of videos and trajectories from parasitological analyses of Trypanosoma cruzi (T. cruzi), the etiological agent of Chagas disease, as used in our papers [1][2]. The videos were captured using optical microscopy with dye-free samples, enabling the analysis of parasite movement in its trypomastigote blood form. The dataset highlights T. cruzi exhibiting collateral motion, while blood cells perform fluctuating and PTZ motions. All trajectories were validated by specialists.

Video sets for training and testing are available. Videos are up to 10 seconds long, with a frame rate of approximately 30 frames per second (fps) and a resolution of 640 x 480 pixels. Both the training and testing sets contain videos with parasites in distinct microscope fields of view. Note: (1) The V1.avi video is available at https://doi.org/10.1371/journal.pone.0095398.s001. (2) The V4.avi video has no parasites. For further details, we recommend consulting [1].

Trajectory sets for training and testing are available. Each line of the CSV file is a trajectory step. Each step consists of the following fields: video name (Video); trajectory number (Trajectory); frame number (Frame); x position (Px); y position (Py); and label, with 0 for cell and 1 for parasite (Class). For further details, we recommend consulting [2].

The dataset can be used for studies on parasite motility, motion pattern analysis, and parasite detection. It is particularly valuable in parasitology, biophysics, AI research on motility-based diagnostics, and related fields.

If you use this dataset, please cite the following papers:

[1] Martins GL, Ferreira DS, Ramalho GLB (2021). Collateral motion saliency-based model for Trypanosoma cruzi detection in dye-free blood microscopy. Computers in Biology and Medicine 132:104220, ISSN 0010-4825, https://doi.org/10.1016/j.compbiomed.2021.104220

[2] Martins GL, Ferreira DS, Carneiro CM, Nogueira-Paiva NC, Bianchi AGC (2024). Trajectory-driven computational analysis for element characterization in Trypanosoma cruzi video microscopy. PLoS ONE 19(6): e0304716. https://doi.org/10.1371/journal.pone.0304716

Acknowledgment

The Immunopathology Laboratory of the Nucleus of Research in Biological Sciences (NUPEB) at the Federal University of Ouro Preto (UFOP) provided the videos used in this research, with special thanks to Dra. Cláudia M. Carneiro and Dra. Nivia C. N. de Paiva for their assistance in video analysis. Additional contributions came from the Parasite Biology Laboratory of the Faculty of Medicine at the National Autonomous University of Mexico (UNAM), with appreciation to Dra. Paz M. S. Schettino, Dra. Margarita C. Bravo, and Dra. Any L. F. Villegas, as well as expert TLC. David V. Perales.

Valuable insights and support that enriched the development of this project were provided, particularly by Dr. Daniel S. Ferreira, Dr. Geraldo L. B. Ramalho, and Dra. Andrea G. Campos, as well as by other collaborators.
DOI: 10.17632/98bxc4b7xd.1
title: Article Dataset: R&D INTENSITY, OPERATIONAL PERFORMANCE, AND FUTURE GROWTH EXPECTATIONS: A CROSS-COUNTRY STUDY

description: Dataset and Dataset Support Materia for the Article: R&D INTENSITY, OPERATIONAL PERFORMANCE, AND FUTURE GROWTH EXPECTATIONS: A CROSS-COUNTRY STUDY
DOI: 10.17632/98bxc4b7xd.2
title: Article Dataset: RESEARCH AND DEVELOPMENT INTENSITY AND ITS DUAL IMPACT ON OPERATIONAL PERFORMANCE AND GROWTH EXPECTATIONS: EVIDENCE FROM DEVEPOPED AND EMERGING MARKETS

description: Dataset and Dataset Support Materia for the Article: RESEARCH AND DEVELOPMENT INTENSITY AND ITS DUAL IMPACT ON OPERATIONAL PERFORMANCE AND GROWTH EXPECTATIONS: EVIDENCE FROM DEVEPOPED AND EMERGING MARKETS.
DOI: 10.15468/dl.j9zgax
title: Occurrence Download

description: A dataset containing 418050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2023",
 "Year is less than or equal to 2024",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 418050 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003126-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8j7yh
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tephrosia candida DC.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 283 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003074-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kd7n8xdr3t.1
title: Original Image of Guzhi Zengsheng Zhitong Decoction Mitigates Osteoarthritis via FOXO1-Mediated Autophagy and Apoptosis

description: figure 1 (B-D) Representative histological images of knee joints after 4 weeks of treating, including hematoxylin-eosin (HE), safranin-O fast green, and toluidine blue staining. 

figure 2 (A) Micro-CT images showing 3D reconstructions of the distal femur and transverse and sagittal views of the tibial plateau.

figure 6 (I, J) Immunohistochemical analysis and quantification of FoxO1, LC3B, Parkin and PINK1 expression in the rat articular cartilage following oral administration (n=4, scale bar: 200 μm).

figure 7 (A) Representative transmission electron microscopy images showing mitochondrial morphology (scale bars: 5 μm, 2 μm, 500 nm). (C) Fluorescence images of mitochondrial membrane potential (MMP) staining. Red fluorescence represents JC-1 aggregates, green fluorescence represents JC-1 monomers, and the red/green intensity ratio reflects MMP (scale bar: 100 μm). (D) Fluorescence images of mitochondrial permeability transition pore (MPTP) staining (scale bar: 200 μm). (E) Fluorescence images of reactive oxygen species (ROS) levels (scale bar: 200 μm). 

figure 8 (C) TUNEL staining to evaluate apoptosis in knee cartilage of OA rats after oral GZZD treatment. (scale bar: 100 μm). 

figure 10 (A) JC-1 staining showing mitochondrial membrane potential (MMP) in OA chondrocytes with and without FoxO1 silencing (scale bar: 200 μm). (C) Effects of FoxO1 silencing on mitochondrial MPTP permeability after GZZD treatment. (scale bar: 200 μm). (E) ROS levels visualized by fluorescence staining before and after FoxO1 silencing. (scale bar: 200 μm). 

Supplement figures
Figure S1. Representative anatomical images of rat knee joints at week 4 post-treatment.
Figure S2. Identification of primary chondrocytes. (A) Observation of cell morphology; (B) COL2A1 immunofluorescence staining.
Figure S5. Effects of GZZD on OA chondrocyte apoptosis observed via Annexin V-FITC/PI staining (in vitro).
Figure S8. Effects of oral GZZD on STAT3, FOXO1, P-P65, and P65 protein levels in OA rat chondrocytes analyzed by Western blot and quantitative analysis, in vivo

Western Blot Original Image.
DOI: 10.17632/m3659wpksx.1
title: Entrepreneurial Performance and Firm Performance

description: Data was collected through a survey conducted by a third party on 150 respondents with the following demographics: living in the province of West Java - Indonesia, being a business owner/manager, aged from 17 to 60 years, and having a socioeconomic status: middle or upper. 51% of respondents are men and 49% are women. In terms of age range, respondents aged 18 – 24 were 0.7%, 25 – 30 46.7%, 31 – 35 24.7%, 36 – 40 19.3%, 41 – 45 4%, 46 – 50 2.7% and 51 – 55 2%. Respondents' socioeconomic status: middle 42% and upper 58%.
DOI: 10.15468/dl.a5mzxe
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tephrosia purpurea subsp. purpurea)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 148 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003133-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ydskp2crf3.1
title: Detailed Database(antibiotics)

description: With manuscript (ID: HAZMAT-D-24-18089. Title: Unveiling the overlooked silent threat: High-throughput suspect screening of antibiotics and multidimensional heterogeneity in aquatic ecosystems of mega city) related detailed database
DOI: 10.15468/dl.vcura7
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Terminalia ivorensis A.Chev."
 ]
}

 The dataset includes 136 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003075-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6czct
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-134.87331 13.11360,-65.93040 13.11360,-65.93040 40.69076,-134.87331 40.69076,-134.87331 13.11360))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Corythaica Stål, 1873"
 ]
}

 The dataset includes 96 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003134-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fb37x69jcd.1
title: Redox-sensitive partitioning of vanadium and other heterovalent elements between apatite and biotite in high silica magmas

description: Revised supplementary data and figures associated with the manuscript submitted for publication at Geochimica et Cosmochimica Acta.
DOI: 10.6084/m9.figshare.28520351
title: MIROC6 IVT

description: MIROC6 IVT
DOI: 10.15468/dl.m9a9b8
title: Occurrence Download

description: A dataset containing 694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tephrosia vogelii Hook.f.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 694 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003076-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14927761
title: PaStEL:  Generating free-energy landscapes and mapping conformational transition pathways from cryo-EM images using a deep isometric autoencoder

description: This version contains the following files used in the paper (DOI: 10.26434/chemrxiv-2024-8t70s):



Atomic models used for generating synthetic pariticle images of Chignolin and Trp-cage

Model trained with particle images of ribosome (https://github.com/zhonge/cryodrgn empiar/tree/main/empiar10076) and the density maps reconstructed by PaStEL with cryoTWIN

Prepared particle image of wildtype spike protein (Spro)  and the D614G mutant, the models trained with them, and the density maps reconstructed by PaStEL with cryoTWIN
DOI: 10.5281/zenodo.14927762
title: PaStEL:  Generating free-energy landscapes and mapping conformational transition pathways from cryo-EM images using a deep isometric autoencoder

description: This version contains the following files used in the paper (DOI: 10.26434/chemrxiv-2024-8t70s):



Atomic models used for generating synthetic pariticle images of Chignolin and Trp-cage

Model trained with particle images of ribosome (https://github.com/zhonge/cryodrgn empiar/tree/main/empiar10076) and the density maps reconstructed by PaStEL with cryoTWIN

Prepared particle image of wildtype spike protein (Spro)  and the D614G mutant, the models trained with them, and the density maps reconstructed by PaStEL with cryoTWIN
DOI: 10.17632/wgzxtbjg2f.1
title: Data for Experimental Design of ABS and PLA+ Materials

description: The experimental design of ABS and PLA+ materials
DOI: 10.17632/nwn5vn7nwd.1
title: Varietal response of cowpea (Vigna unguiculata) and yard long bean (Vigna unguiculata subsp. sesquipedalis) against invasive thrips, Thrips parvispinus (Karny) (Thysanoptera: Thripidae)

description: This dataset presents the varietal response of cowpea and yard-long bean to the invasive thrips species Thrips parvispinus (Karny) under field conditions. The study was conducted in Kerala, India, during the rabi and summer seasons (2022–2024). The dataset includes:

Varieties Tested: Kanakamony, Anaswara (Semi- trailing cowpea), Bhagyalakshmi, Kashi Kanchan (Bushy cowpea), Lola, Vyjayanthi, Vellayani Jyothika, Malika, Sharika, Gitika and Deepika (yard long bean) 
Thrips Infestation Data: Mean thrips population per plant for each variety, Mean thrips population per flower for each variety, leaf damage score, flower damage score at different growth stages, flower bud abortion rate, number of peduncles with pods, per cent effective peduncles, recorded at different growth stages.
Damage Assessment: Flower damage scoring based on the Jackai and Singh (1988) damage scale.
Yield Data: number of peduncles with pods and per cent effective peduncles across tested varieties.
Pesticide-Free Management: No insecticides were applied to evaluate natural resistance.
Statistical Analysis: Mean comparisons using ANOVA, correlation between thrips population, damage scores, flower bud abortion rate, per cent effective peduncles, no of pods peduncles with pods recorded at different growth stages and resistance categorization of varieties, heritability data
File Formats
CSV (.csv) – raw data and processed data with statistical results.
Keywords
Damage score, thrips population, Resistant genotypes, Flower bud abortion rate, Heritability, coefficient of variation

Funding Information
(Kerala Agricultural University)

Contact Information
Safna M
Kerala Agricultural University
[safns-2020-21-015@student.kau.in
DOI: 10.17632/m7vvcr7js5.1
title: Dynamic capacity control

description: The average ticket demand at each ticket sales time.
DOI: 10.17632/n2k5bdzcf2.1
title: Spiritual Leadership and Teacher Burnout

description: This study investigated the impact of principals' spiritual leadership styles on teacher burnout in special education schools in Türkiye.
DOI: 10.15468/dl.jzmypr
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Ida grandis Fowlie ex Oakeley"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003136-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjqvs7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melanoseris bracteata Hook.f. & Thomson, 1881"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003137-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecx9xn
title: Occurrence Download

description: A dataset containing 17309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Terminalia catappa L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 17309 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003135-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive9910.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9910.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0077936.10fu
title: SH0077936.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0077937.10fu
title: SH0077937.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive9911.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9911.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0077938.10fu
title: SH0077938.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive9912.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9912.20251217.10
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0077939.10fu
title: SH0077939.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive9913.20241212.9.2
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.