cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xfec4d
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Auchenipterus maculosus"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017238-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yu5awd
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Serbia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 198 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017239-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7u7qte
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Dominican Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017240-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wts6rg
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Diapus aculeatus, Myocalandra exarata, Camenta)"
 ]
}

 The dataset includes 226 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017241-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.janzhj
title: Occurrence Download

description: A dataset containing 1247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia colei"
 ]
}

 The dataset includes 1247 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017242-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zvwfg
title: Occurrence Download

description: A dataset containing 61671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 61671 records from 662 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017221-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4tda2
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Haplothrips rivnayi"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017243-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15834423
title: Spatial Transcriptomics Data and Computational Tools for Integrated Super-Resolution In Situ Sequencing and Protein Imaging for 3D Characterization of Intact Human Brain Organoids

description: This repository provides the complete set of data and analysis scripts supporting the study titled:“Integrated Super-Resolution In Situ Sequencing and Protein Imaging for 3D Characterization of Intact Human Brain Organoids”

The dataset includes processed CSV files containing 3D spatial coordinates (x, y, z) and gene identities for individual RNA puncta detected in expanded human brain organoids. These organoids were generated from induced pluripotent stem cells (iPSCs) derived from patients carrying the iSTXBP1 mutation and their sex-matched healthy family members. The data were acquired using two complementary techniques:





Expansion Sequencing (ExSeq): A super-resolution, in situ RNA sequencing method that allows nanoscale localization of transcripts within intact, physically expanded organoids.




Ex situ RNA sequencing: Conventional transcriptomic profiling performed outside the tissue context to provide additional validation and complementary expression data.



Together, these methods enabled a high-resolution, spatially informed characterization of gene expression patterns in disease-relevant and control brain organoids.

In addition to the spatial transcriptomics data, the repository includes Python scripts designed for quantitative spatial analysis and visualization. These scripts perform:





3D segmentation of nuclei or cell boundaries,




Distance-based analyses (e.g., distances to centroids or edges),




Spatial statistics such as Moran’s I for assessing local spatial autocorrelation,



The combination of ExSeq and Ex situ data, along with this computational toolkit, allows researchers to explore the spatial organization of gene expression at subcellular resolution and identify potential spatial signatures associated with neurodevelopmental disorders.

Please refer to the included README.md file for detailed descriptions of file structure, dependencies, and analysis steps.
DOI: 10.15468/dl.sqf34q
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Bracon piger, Orgilus punctulator, Eutinobothrus brasiliensis, Myocalandra exarata, Camenta)"
 ]
}

 The dataset includes 245 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017244-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj4nr8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudauchenipterus galeatus"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017245-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3gf6b
title: Occurrence Download

description: A dataset containing 9663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9663 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017246-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j36uzb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Equatorial Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017247-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.29605367
title: Data for the soil column experiments of Zhang et al.

description: dataset for the manuscript titled "Tracing fertilizer transformation and leaching in karst soils via soil column experiments and nitrate isotopes"
DOI: 10.6084/m9.figshare.29605367.v1
title: Data for the soil column experiments of Zhang et al.

description: dataset for the manuscript titled "Tracing fertilizer transformation and leaching in karst soils via soil column experiments and nitrate isotopes"
DOI: 10.15468/dl.3hz493
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Brachygluta paludosa"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017250-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egd8ab
title: Occurrence Download

description: A dataset containing 4169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4169 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017248-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkm8wx
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Spathius prusias, Orgilus punctulator, Eutinobothrus brasiliensis, Myocalandra exarata, Camenta)"
 ]
}

 The dataset includes 296 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017249-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkey69
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parauchenipterus paseae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017251-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15214641
title: Laboratory experiments of turbulent free surface flow over obstacle arrays

description: Laboratory experiments of turbulent free surface flow over obstacle arrays conducted at the hydraulics laboratory at the University of Córdoba combining gaussian-like, log-normal-like and dune-like obstacle profiles. All custom code used for data postprocessing is included.
DOI: 10.5281/zenodo.16210418
title: Laboratory experiments of turbulent free surface flow over obstacle arrays

description: Laboratory experiments of turbulent free surface flow over obstacle arrays conducted at the hydraulics laboratory at the University of Córdoba combining gaussian-like, log-normal-like and dune-like obstacle profiles. All custom code used for data postprocessing is included.
DOI: 10.15468/dl.rbjzbb
title: Occurrence Download

description: A dataset containing 1996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong)",
 "TaxonKey is Coix lacryma-jobi"
 ]
}

 The dataset includes 1996 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017252-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8722td
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017253-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10453356
title: Climate change has desynchronised insect and vegetation phenologies across Europe

description: This study evaluates how climate change has affected the phenological synchrony between vegetation and insects across Europe. Leveraging 34 years of remote‑sensing observations and citizen‑science records, we analysed observations of 1,495 phytophagous insect species (spanning four orders) together with the vegetation start‑of‑season (SOS) at the same spatio‑temporal points. Our goal was to quantify long-term trends in vegetation and insect phenology and analyse potential drivers.
DOI: 10.5281/zenodo.16146896
title: Climate change has desynchronised insect and vegetation phenologies across Europe

description: This study evaluates how climate change has affected the phenological synchrony between vegetation and insects across Europe. Leveraging 34 years of remote‑sensing observations and citizen‑science records, we analysed observations of 1,495 phytophagous insect species (spanning four orders) together with the vegetation start‑of‑season (SOS) at the same spatio‑temporal points. Our goal was to quantify long-term trends in vegetation and insect phenology and analyse potential drivers.
DOI: 10.15468/dl.xzsr7w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017254-250717081556266/datasets/export for details.
DOI: 10.15468/dl.cvtaqd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia affinis",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017255-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15034813
title: Data from: A synthesized framework for the evolutionary origins of obligate avian brood parasitism

description: The repeated evolution of obligate avian brood parasitism (OBP) across diverse lineages represents a major evolutionary puzzle. While host-parasite coevolution has been extensively studied, the initial conditions that favor OBP emergence remain unclear. Here, we integrate theoretical modeling, paleoclimate mapping, and phylogenetic comparative analyses to identify the key drivers underlying OBP evolution. Our model demonstrates that rising parental care costs, particularly under environmental stress, favor the emergence of OBP. However, its persistence requires additional life-history adaptations, including increased offspring production. Paleoclimatic data support this framework: OBP origins often followed major climatic upheavals, with fixations occurring during subsequently more stable periods. Phylogenetic analyses reveal that OBP evolution is associated with high-mortality ecological traits, such as open-habitat use. We also find increased OBP likelihood in both smaller carnivorous and larger herbivorous/omnivorous species, indicating size-dependent trophic constraints. These results provide a unified framework explaining the recurrent evolution of OBP by linking environmental pressures and life-history trade-offs to this remarkable behavioral adaptation.
DOI: 10.5281/zenodo.15034814
title: Data from: A synthesized framework for the evolutionary origins of obligate avian brood parasitism

description: The repeated evolution of obligate avian brood parasitism (OBP) across diverse lineages represents a major evolutionary puzzle. While host-parasite coevolution has been extensively studied, the initial conditions that favor OBP emergence remain unclear. Here, we integrate theoretical modeling, paleoclimate mapping, and phylogenetic comparative analyses to identify the key drivers underlying OBP evolution. Our model demonstrates that rising parental care costs, particularly under environmental stress, favor the emergence of OBP. However, its persistence requires additional life-history adaptations, including increased offspring production. Paleoclimatic data support this framework: OBP origins often followed major climatic upheavals, with fixations occurring during subsequently more stable periods. Phylogenetic analyses reveal that OBP evolution is associated with high-mortality ecological traits, such as open-habitat use. We also find increased OBP likelihood in both smaller carnivorous and larger herbivorous/omnivorous species, indicating size-dependent trophic constraints. These results provide a unified framework explaining the recurrent evolution of OBP by linking environmental pressures and life-history trade-offs to this remarkable behavioral adaptation.
DOI: 10.15468/dl.f63bvm
title: Occurrence Download

description: A dataset containing 2945257870 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year 1950-2025"
 ]
}

 The dataset includes 2945257870 records from 66305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017132-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgbbq6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Graniger femoralis"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017256-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m7nqrg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAC7400"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017257-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vn8vyv
title: Occurrence Download

description: A dataset containing 1317 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia crassa"
 ]
}

 The dataset includes 1317 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017258-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kwry7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia affinis",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017259-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkyqfb
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Gambia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017260-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba3bvc
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Myrmoteras indicum, Bracon piger, Orgilus punctulator, Eutinobothrus brasiliensis, Myocalandra exarata, Camenta)"
 ]
}

 The dataset includes 249 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017261-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8yrajs
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachelyopterus striatulus"
 ]
}

 The dataset includes 333 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017262-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8rc2z
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Asterolecanium epidendri"
 ]
}

 The dataset includes 35 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017263-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zhtj6
title: Occurrence Download

description: A dataset containing 2945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cytisus scoparius",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2945 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017264-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w387gd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is ",
 "Continent is Europe",
 "Year is 1985,2020",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is greater than or equal to 200",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017265-250717081556266/datasets/export for details.
DOI: 10.15468/dl.p3gbph
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gambusia affinis",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017266-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfxj4t
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Platyscapa quadraticeps, Myrmoteras indicum, Bracon piger, Orgilus punctulator, Eutinobothrus brasiliensis, Myocalandra exarata, Camenta)"
 ]
}

 The dataset includes 284 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017267-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.