cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wt97nu
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrosomus tennesseensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 56 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044586-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3y9vg
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus viridis",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044587-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfhdxq
title: Occurrence Download

description: A dataset containing 8240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lanius schach",
 "MediaType is Image"
 ]
}

 The dataset includes 8240 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044589-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv3tzk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus viridis",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044588-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tg5fyh
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus viridis",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044590-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11582/2020.00022
title: Creep burst coincident with faulting in marble observed in 4D synchrotron X-ray imaging triaxial compression experiments

description: Time series of synchrotron X-ray microtomography data of creep deformation of two samples of Carrara marble. Voxel size: 6.5 micrometers
DOI: 10.15468/dl.f4u7ua
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus prolifer",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 116 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044592-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7rjyz
title: Occurrence Download

description: A dataset containing 12305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Apalone spinifera)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 12305 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044596-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11582/2020.00026
title: Climate model data: idealized simulations from CAM4 and GISS-E2

description: This dataset contains monthly mean data from two climate models (CAM4 and GISS-E2) run with two different ocean configurations (fixed SSTs and slab ocean).
DOI: 10.15468/dl.kapacm
title: Occurrence Download

description: A dataset containing 9812 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Elymus pseudocaninus, Solanum lycopersicum, Spinacia oleracea, Arachis hypogaea, Benincasa hispida, Lactuca sativa, Allium cepa, Solanum melongena, Agropyron cristatum, Lablab purpureus)",
 "Year 1898-2024"
 ]
}

 The dataset includes 9812 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044591-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ct3q39
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophiostoma novo-ulmi",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044593-250717081556266/datasets/export for details.
DOI: 10.15468/dl.d7sh3c
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophiostoma novo-ulmi",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044595-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mkfxk
title: Occurrence Download

description: A dataset containing 100545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bursera simaruba"
 ]
}

 The dataset includes 100545 records from 363 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044492-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.11582/2020.00028
title: 4xCO2 and CTRL simulations for CESM2-FV2 with COSP

description: Output from CESM2-FV2 runs. A 250 year control and a 150 4xCO2 run (starting 100 years into the control) with COSP enabled.
DOI: 10.60867/00000025
title: Atlas of Skeletal Anatomy: Short-Beaked Echidna (Tachyglossus aculeatus)

description: Monotremes embody many unique aspects of mammalian evolution, and their skeletal anatomy presents features that differ markedly from the placental mammals that dominate comparative anatomy texts.
description: The creation of this skeletal atlas short-beaked echidna (Tachyglossus aculeatus)has been guided by the recognition of a need for a comprehensive anatomical reference that can serve as a resource for researchers across fields including veterinary, comparative anatomy, conservation biology, and palaeontology.
description: Mammalian skeletal systems are characterised by a range of specialised traits reflecting their distinct evolutionary lineages and ecological niches. Theechidna's skeleton features a characteristic sprawling gait, reptilian-likepectoral girdle and forelimbs that are specialised for their particular mode of humeral-rotation digging. These characteristics, coupled with the limited availability of anatomical resources for the taxa, make this atlas a valuable resource for anyone engaged in the study of biological form and function.
DOI: 10.15468/dl.2gacvs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Apalone spinifera)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044597-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wa74p9
title: Occurrence Download

description: A dataset containing 287912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anas poecilorhyncha)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 287912 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044566-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxfdnn
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Apionichthys nattereri)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044600-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29645204
title: Supplementary Material for: Impact of ATP Synthase Subunit β on TLR Signaling Pathway in Promoting Airway Remodeling and Heterogeneity of Small Airway Epithelial Cells in Chronic Obstructive Pulmonary Disease

description: Chronic obstructive pulmonary disease (COPD) is characterized by airway remodeling and epithelial cell dysfunction, yet the underlying regulatory mechanisms remain incompletely understood. This study aimed to investigate the role of ATP synthase subunit β (ATP5B) in COPD pathogenesis, with a focus on epithelial heterogeneity and airway remodeling. We employed single-cell RNA sequencing (scRNA-seq) to analyze small airway epithelial cells and identify key cell populations and hub genes. ATP5B was identified through the intersection of differentially expressed genes (DEGs) and epithelial markers. In vitro experiments were conducted using 2% (volume/volume, v/v) cigarette smoke extract (CSE)-treated BEAS-2B cells, and in vivo validation was performed in CS/LPS-induced COPD mouse models. scRNA-seq identified 12 distinct epithelial clusters, with ATP5B emerging as a central hub gene. ATP5B expression was significantly upregulated in CSE-treated BEAS-2B cells (fold change = 1.92, p &lt; 0.05). ATP5B knockdown reversed CSE-induced apoptosis (fold change = 0.397, p &lt; 0.05), reduced inflammatory cytokines (e.g., IL-6: 0.40; TNF-α: 0.46, p &lt; 0.05), and suppressed EMT marker expression (E-cadherin↑, Vimentin↓). In vivo, ATP5B silencing alleviated airway remodeling and inflammation. Mechanistically, GSEA and experimental validation demonstrated that ATP5B activates the Toll-like receptor (TLR) signaling pathway to promote airway remodeling. Our findings reveal ATP5B as a key regulator of airway remodeling in COPD via TLR signaling activation, suggesting its potential as a diagnostic biomarker and therapeutic target.
DOI: 10.6084/m9.figshare.29645204.v1
title: Supplementary Material for: Impact of ATP Synthase Subunit β on TLR Signaling Pathway in Promoting Airway Remodeling and Heterogeneity of Small Airway Epithelial Cells in Chronic Obstructive Pulmonary Disease

description: Chronic obstructive pulmonary disease (COPD) is characterized by airway remodeling and epithelial cell dysfunction, yet the underlying regulatory mechanisms remain incompletely understood. This study aimed to investigate the role of ATP synthase subunit β (ATP5B) in COPD pathogenesis, with a focus on epithelial heterogeneity and airway remodeling. We employed single-cell RNA sequencing (scRNA-seq) to analyze small airway epithelial cells and identify key cell populations and hub genes. ATP5B was identified through the intersection of differentially expressed genes (DEGs) and epithelial markers. In vitro experiments were conducted using 2% (volume/volume, v/v) cigarette smoke extract (CSE)-treated BEAS-2B cells, and in vivo validation was performed in CS/LPS-induced COPD mouse models. scRNA-seq identified 12 distinct epithelial clusters, with ATP5B emerging as a central hub gene. ATP5B expression was significantly upregulated in CSE-treated BEAS-2B cells (fold change = 1.92, p &lt; 0.05). ATP5B knockdown reversed CSE-induced apoptosis (fold change = 0.397, p &lt; 0.05), reduced inflammatory cytokines (e.g., IL-6: 0.40; TNF-α: 0.46, p &lt; 0.05), and suppressed EMT marker expression (E-cadherin↑, Vimentin↓). In vivo, ATP5B silencing alleviated airway remodeling and inflammation. Mechanistically, GSEA and experimental validation demonstrated that ATP5B activates the Toll-like receptor (TLR) signaling pathway to promote airway remodeling. Our findings reveal ATP5B as a key regulator of airway remodeling in COPD via TLR signaling activation, suggesting its potential as a diagnostic biomarker and therapeutic target.
DOI: 10.6084/m9.figshare.29645210
title: Supplementary Material for: Interleukin-6 removal and clinical effects of Oxiris: a systematic review and meta-analysis.

description: Introduction
Sepsis is a life-threatening condition associated with high mortality due to an unregulated host immune response. Extracorporeal blood purification (EBP) therapies have been proposed as adjunctive treatments to immunomodulate patients; however, none have been consistently shown to be effective in reducing mortality. In several observational studies, Oxiris has been associated with cytokine reduction and a potential benefit in influencing inflammatory diseases. This meta-analysis explores the association between cytokine removal and clinical efficacy of the Oxiris membrane using interleukin-6 (IL-6) as a biomarker.
Methods
This review includes articles on EBP with Oxiris membranes in adult patients with sepsis/septic shock or COVID-19. No time or language restrictions were applied to the systematic literature search. Data extraction and statistical analysis were limited to the cytokines and clinical data reported in the included articles. The most representative cytokine was IL-6 and the selected outcomes included VIS (Vasoactive-Inotropic Score), SOFA score, procalcitonin (PCT) and c-reactive protein (CRP). The review used meta-analysis and unpaired t-test to estimate differences between groups of patients treated with or without Oxiris.
Results
The study found no significant differences in demographics between the intervention and control groups at baseline. Intervention group showed a significant reduction in vasoactive inotropic score, norepinephrine dose, SOFA score, procalcitonin and C-reactive protein. 
Conclusion
We reviewed 8 studies in which IL-6 was significantly reduced in the Oxiris group compared to the control. This meta-analysis found that the use of the Oxiris membrane resulted in significant clinical improvement during treatment.
DOI: 10.6084/m9.figshare.29645210.v1
title: Supplementary Material for: Interleukin-6 removal and clinical effects of Oxiris: a systematic review and meta-analysis.

description: Introduction
Sepsis is a life-threatening condition associated with high mortality due to an unregulated host immune response. Extracorporeal blood purification (EBP) therapies have been proposed as adjunctive treatments to immunomodulate patients; however, none have been consistently shown to be effective in reducing mortality. In several observational studies, Oxiris has been associated with cytokine reduction and a potential benefit in influencing inflammatory diseases. This meta-analysis explores the association between cytokine removal and clinical efficacy of the Oxiris membrane using interleukin-6 (IL-6) as a biomarker.
Methods
This review includes articles on EBP with Oxiris membranes in adult patients with sepsis/septic shock or COVID-19. No time or language restrictions were applied to the systematic literature search. Data extraction and statistical analysis were limited to the cytokines and clinical data reported in the included articles. The most representative cytokine was IL-6 and the selected outcomes included VIS (Vasoactive-Inotropic Score), SOFA score, procalcitonin (PCT) and c-reactive protein (CRP). The review used meta-analysis and unpaired t-test to estimate differences between groups of patients treated with or without Oxiris.
Results
The study found no significant differences in demographics between the intervention and control groups at baseline. Intervention group showed a significant reduction in vasoactive inotropic score, norepinephrine dose, SOFA score, procalcitonin and C-reactive protein. 
Conclusion
We reviewed 8 studies in which IL-6 was significantly reduced in the Oxiris group compared to the control. This meta-analysis found that the use of the Oxiris membrane resulted in significant clinical improvement during treatment.
DOI: 10.6084/m9.figshare.29645213
title: Supplementary Material for: Reversible opacification of intraocular lens in vitro: case report

description: Introduction: We reported a case of late-onset opacification of a hydrophilic acrylic intraocular lens (IOL) that developed years after uneventful phacoemulsification cataract surgery. Remarkably, the calcification-related opacification was successfully reversed in vitro using ethylenediaminetetraacetic acid (EDTA).
Case Presentation: An 86-year-old male presented with a two-year history of progressive visual decline in the right eye (best-corrected visual acuity: 2/200). Slit-lamp examination revealed posterior capsular opacification (PCO), and B-scan ultrasonography showed dense vitreous opacities, precluding fundus and optical coherence tomography (OCT) examinations. He had undergone cataract surgery with implantation of a Rayner monofocal IOL ten years ago. As for the treatment of vitreous opacities, PCO, as well as investigating fundus diseases, the pars plana vitrectomy was performed. After PCO removal, fundus visualization remained poor. Intraoperative inspection revealed diffuse opacification of the IOL, which was subsequently explanted. Following removal of IOL, fundus examination revealed non-proliferative diabetic retinopathy and asteroid hyalosis. In vitro, the IOL exhibited homogeneous opacification resistant to mechanical cleaning and soaking in sterile water for one week. However, immersion in 4% EDTA gradually restored full optical clarity over the course of one month. Scanning electron microscopy (SEM) demonstrated small subsurface pits suggestive of prior crystal deposition. Energy-dispersive X-ray spectroscopy (EDS) detected only carbon (C) and oxygen (O), without evidence of calcium (Ca), silicon (Si), or phosphorus (P).
Conclusions: This case highlighted the potential reversibility of hydrophilic IOL opacification through EDTA chelation, suggesting a promising direction for therapeutic management of IOL calcification in vivo in the future.
DOI: 10.15468/dl.3m3dk8
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibalanus improvisus",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044602-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29645213.v1
title: Supplementary Material for: Reversible opacification of intraocular lens in vitro: case report

description: Introduction: We reported a case of late-onset opacification of a hydrophilic acrylic intraocular lens (IOL) that developed years after uneventful phacoemulsification cataract surgery. Remarkably, the calcification-related opacification was successfully reversed in vitro using ethylenediaminetetraacetic acid (EDTA).
Case Presentation: An 86-year-old male presented with a two-year history of progressive visual decline in the right eye (best-corrected visual acuity: 2/200). Slit-lamp examination revealed posterior capsular opacification (PCO), and B-scan ultrasonography showed dense vitreous opacities, precluding fundus and optical coherence tomography (OCT) examinations. He had undergone cataract surgery with implantation of a Rayner monofocal IOL ten years ago. As for the treatment of vitreous opacities, PCO, as well as investigating fundus diseases, the pars plana vitrectomy was performed. After PCO removal, fundus visualization remained poor. Intraoperative inspection revealed diffuse opacification of the IOL, which was subsequently explanted. Following removal of IOL, fundus examination revealed non-proliferative diabetic retinopathy and asteroid hyalosis. In vitro, the IOL exhibited homogeneous opacification resistant to mechanical cleaning and soaking in sterile water for one week. However, immersion in 4% EDTA gradually restored full optical clarity over the course of one month. Scanning electron microscopy (SEM) demonstrated small subsurface pits suggestive of prior crystal deposition. Energy-dispersive X-ray spectroscopy (EDS) detected only carbon (C) and oxygen (O), without evidence of calcium (Ca), silicon (Si), or phosphorus (P).
Conclusions: This case highlighted the potential reversibility of hydrophilic IOL opacification through EDTA chelation, suggesting a promising direction for therapeutic management of IOL calcification in vivo in the future.