cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/2jr1x-xgr73
title: B. subtilis 3267

description: Raw data files of B. subtilis 3267
description: <strong>Tilt Series Date:</strong> 2011-12-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-30/rawdata/</p>3267a0030.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-30/rawdata/3267a0030.mrc"
        > <i class="download icon"></i> Download </a></p>

        3267a0030_full.rec,  Reconstruction (Pixel Size 3.8 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-30/3dimage_16032/3267a0030_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.ymb6na
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "Geometry POLYGON((122.46146 12.443,124.56261 12.443,124.56261 14.32973,122.46146 14.32973,122.46146 12.443))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rubiaceae",
 "Year 2020-2025"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045596-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/7e4g2-ex040
title: BsubtilisMJ007

description: Bsubtilis MJ007, skinny Bacillus
description: <strong>Tilt Series Date:</strong> 2009-09-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-26-1/3dimage_24594/</p>09sep26a_et-pos4_001_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-26-1/3dimage_24594/09sep26a_et-pos4_001_full.rec"
        > <i class="download icon"></i> Download </a></p>

        09sep26a_et-pos4_001.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-26-1/rawdata/09sep26a_et-pos4_001.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pc1zv-a8w10
title: Delftia nanopods

description: Delftia acidovorans Cs1-4 nanopod pellet
description: <strong>Tilt Series Date:</strong> 2009-02-22</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Delftia acidovorans</p>
<strong>Strain:</strong> Cs1-4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 0.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> grown by Bill Hickey at UW-Madison; data collected and processed by Elitza Tocheva</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in MSM with phenanthrene. Nanopods enriched and sample taken from supernatant above pellet.</p>
<strong>Sample Preparation:</strong> 20nm gold, 1.5s blot, -2 offset</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-22-7/rawdata/</p>tube7_225.mrc,  Tilt Series (Pixel Size 0.4406 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-22-7/rawdata/tube7_225.mrc"
        > <i class="download icon"></i> Download </a></p>

        tube7_225_full.rec,  Reconstruction (Pixel Size 0.8813 nm), 518.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-22-7/3dimage_94591/tube7_225_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1ejzf-72t29
title: Pdj 122708 634

description: Prosthecobacter dejongeii, 09jan04b_pdj_624w1_022,
description: <strong>Tilt Series Date:</strong> 2009-01-04</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-01-04-10_slicer10450.jpg: Prosthecobacter dejongeii .  pili
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-01-04-10/rawdata/</p>09jan04b_pdj_624w1_022.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-01-04-10/rawdata/09jan04b_pdj_624w1_022.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jan04b_pdj_624w1_022_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-01-04-10/3dimage_13468/09jan04b_pdj_624w1_022_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/76gm0-egv48
title: Hyphomonas session9 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-8/rawdata/</p>09mar07a_36c_008.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-8/rawdata/09mar07a_36c_008.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar07a_36c_008_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-07-8/3dimage_6885/09mar07a_36c_008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.15488730
title: Extrinsic variability but not intrinsic variability affects the search for synergies in de-novo motor learning

description: Raw Data Set and Analysis Codes for the study on influence of variability in search for new joint angle synergies.
DOI: 10.5281/zenodo.15488729
title: Extrinsic variability but not intrinsic variability affects the search for synergies in de-novo motor learning

description: Raw Data Set and Analysis Codes for the study on influence of variability in search for new joint angle synergies.
DOI: 10.22002/xtba2-xnj49
title: TRIM5-21R 2D lattice

description: TRIM5-21R 2D lattice prepared by Barbie Ganser-Pornillos and Viswanathan Chandrasekaran
description: <strong>Tilt Series Date:</strong> 2011-11-19</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: None μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Viswanathan Chandrasekarangrids purified the protein, Barbie Ganser-Pornillos assembled protein into 2D lattice. The sample was was plunge frozen and imaged at Caltech by Cora Woodward and Kelly Dryden</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-11-19-3/rawdata/</p>12nov19_TRIM5_21R_grid2_AT2BT1_0005.mrc,  Tilt Series (Pixel Size 0.45 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-11-19-3/rawdata/12nov19_TRIM5_21R_grid2_AT2BT1_0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        12nov19_TRIM5_21R_grid2_AT2BT1_0005_full.rec,  Reconstruction (Pixel Size 1.8 nm), 530.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-11-19-3/3dimage_23750/12nov19_TRIM5_21R_grid2_AT2BT1_0005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8anzr-v3t55
title: HUVECs CHMP4A+VPS4DN

description: HUVECs cells transfected with CHMP4A+VPS4DN constructs using Nucleofector Kit. Sample# C58-2
description: <strong>Tilt Series Date:</strong> 2011-03-31</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4DN construct provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-03-31-15/3dimage_68429/</p>11mar31a_C_58-2_019_full.rec,  Reconstruction (Pixel Size 2.0 nm), 453.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-03-31-15/3dimage_68429/11mar31a_C_58-2_019_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11mar31a_C_58-2_019.st,  Tilt Series (Pixel Size 0.5 nm), 255.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-03-31-15/rawdata/11mar31a_C_58-2_019.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.zb5zfv
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lilium callosum"
 ]
}

 The dataset includes 113 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045598-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/s2n2a-sy633
title: CB15N w/ methanol control

description: Raw data files of CB15N w/ methanol control
description: <strong>Tilt Series Date:</strong> 2009-10-10</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Experiments done by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase in PYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-79/rawdata/</p>09oct10b_WTCCmet_079.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-79/rawdata/09oct10b_WTCCmet_079.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct10b_WTCCmet_079_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-79/3dimage_10181/09oct10b_WTCCmet_079_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hsjbe-b8w96
title: Eco 020509 27b

description: Escherichia coli, 09feb08c_12_2_1_020509_27_044, btub filaments,
description: <strong>Tilt Series Date:</strong> 2009-02-08</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 12.2.1 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-4/rawdata/</p>09feb08c_12_2_1_020509_27_044.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-4/rawdata/09feb08c_12_2_1_020509_27_044.mrc"
        > <i class="download icon"></i> Download </a></p>

        09feb08c_12_2_1_020509_27_044_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-02-08-4/3dimage_13510/09feb08c_12_2_1_020509_27_044_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1ryef-jbk90
title: Bsubtilis349

description: Bsubtilis JFG349 (MJ007, SpoIIIE78-11-GFP)
description: <strong>Tilt Series Date:</strong> 2011-08-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> JFG349, ponA null, SpoIIIE73-11-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
  etl2011-08-08-6_slicer10443.jpg: Bacillus subtilis .  budding internal membrane
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-08-6/3dimage_24836/</p>3490006_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-08-6/3dimage_24836/3490006_full.rec"
        > <i class="download icon"></i> Download </a></p>

        3490006.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-08-6/rawdata/3490006.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.7qxs7c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoenicagrion ibseni",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043206-251025141854904/datasets/export for details.
DOI: 10.3886/e240308
title: HIFLD OPEN Point

description: Please use 3DHP for updated data The USGS National Hydrography Dataset (NHD) service from The National Map is a comprehensive set of digital spatial data that encodes information about naturally occurring and constructed bodies of surface water (lakes, ponds, and reservoirs), paths through which water flows (canals, ditches, streams, and rivers), and related entities such as point features (springs, wells, stream gages, and dams). The information encoded about these features includes classification and other characteristics, delineation, geographic name, position and related measures, a "reach code" through which other information can be related to the NHD, and the direction of water flow. The network of reach codes delineating water and transported material flow allows users to trace movement in upstream and downstream directions. In addition to this geographic information, the dataset contains metadata that supports the exchange of future updates and improvements to the data. The NHD is available nationwide in two seamless datasets, one based on 1:24,000 (or larger) scale and referred to as high resolution NHD, and the other based on 1:100,000 scale and referred to as medium resolution NHD. The NHD from The National Map supports many applications, such as making maps, geocoding observations, flow modeling, data maintenance, and stewardship. The NHD is commonly combined with other data themes, such as boundaries, elevation, structures, and transportation, to produce general reference base maps. The National Map download client allows free downloads of public domain NHD data in either Esri File Geodatabase or Shapefile formats. For additional information on the NHD, go to https://www.usgs.gov/national-hydrography/national-hydrography-dataset. See https://apps.nationalmap.gov/help/ for assistance with The National Map viewer, download client, services, or metadata. Data Refreshed January, 2024.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e240308v1
title: HIFLD OPEN Point

description: Please use 3DHP for updated data The USGS National Hydrography Dataset (NHD) service from The National Map is a comprehensive set of digital spatial data that encodes information about naturally occurring and constructed bodies of surface water (lakes, ponds, and reservoirs), paths through which water flows (canals, ditches, streams, and rivers), and related entities such as point features (springs, wells, stream gages, and dams). The information encoded about these features includes classification and other characteristics, delineation, geographic name, position and related measures, a "reach code" through which other information can be related to the NHD, and the direction of water flow. The network of reach codes delineating water and transported material flow allows users to trace movement in upstream and downstream directions. In addition to this geographic information, the dataset contains metadata that supports the exchange of future updates and improvements to the data. The NHD is available nationwide in two seamless datasets, one based on 1:24,000 (or larger) scale and referred to as high resolution NHD, and the other based on 1:100,000 scale and referred to as medium resolution NHD. The NHD from The National Map supports many applications, such as making maps, geocoding observations, flow modeling, data maintenance, and stewardship. The NHD is commonly combined with other data themes, such as boundaries, elevation, structures, and transportation, to produce general reference base maps. The National Map download client allows free downloads of public domain NHD data in either Esri File Geodatabase or Shapefile formats. For additional information on the NHD, go to https://www.usgs.gov/national-hydrography/national-hydrography-dataset. See https://apps.nationalmap.gov/help/ for assistance with The National Map viewer, download client, services, or metadata. Data Refreshed January, 2024.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.15468/dl.ttx8bh
title: Occurrence Download

description: A dataset containing 33431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Mephitis mephitis"
 ]
}

 The dataset includes 33431 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043205-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.