cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/srtrdx9766
title: Increased coral biomineralization due to enhanced symbiotic activity upon volcanic ash exposure - dataset

description: Abstract: Coral reefs, which are among the most productive ecosystems on earth, are in global decline due to rapid climate change. Volcanic activity also results in extreme environmental changes at local to global scales, and may have significant impacts on coral reefs compared to other natural disturbances. During explosive eruptions, large amounts of volcanic ash are generated, significantly disrupting ecosystems close to a volcano, and depositing ash over distal areas (10s - 1000s of km depending on i.a. eruption size and wind direction). Once volcanic ash interacts with seawater, the dissolution of metals leads to a rapid change in the geochemical properties of the seawater column. Here, we report the first known effects of volcanic ash on the physiology and elemental cycling of a symbiotic scleractinian coral under laboratory conditions. Nubbins of the branching coral Stylophora pistillata were reared in aquaria under controlled conditions (insolation, temperature, and pH), while environmental parameters, effective quantum yield, and skeletal growth rate were monitored. Half the aquaria were exposed to volcanic ash every other day for 6 weeks (250 mg L-1 week-1), which induced significant changes in the fluorescence-derived photochemical parameters (ΦPSII, Fv/Fm, NPQ, rETR), directly enhanced the efficiency of symbiont photosynthesis (Pg, Pn), and lead to increased biomineralization rates. Enhancement of symbiont photosynthesis is induced by the supply of essential metals, derived from volcanic ash leaching in ambient seawater or within the organism following ingestion. The beneficial role of volcanic ash as an important micronutrient source is supported by the fact that neither photophysiological stress nor signs of lipid peroxidation were detected. Subaerial volcanism affects micronutrient cycling in the coral ecosystem, but the implication for coral ecophysiology on a reef scale remains to be tested. Nevertheless, exposure to volcanic ash can improve coral health and thus influence resilience to external stressors.
DOI: 10.6084/m9.figshare.22814762.v1
title: Supporting Information.pdf

description: Table 1: Whole-rock B and Mo contents and isotopic compositions for the Yardoi Cenozoic granites. S1. Supplementary Figures S2. Supplementary Tables
DOI: 10.17632/n62nvw44z4
title: The reference human induced pluripotent stem cell line KOLF2.1J maintains mitochondrial DNA integrity

description: Supplementary information including methods and table of the manuscript: The reference human induced pluripotent stem cell line KOLF2.1J maintains mitochondrial DNA integrity.
DOI: 10.6084/m9.figshare.28020827.v1
title: 0.074 ng

description: This dataset was used to explore deep learning models ability to quantify analyte load of LFA. Commercially available COVID-19 Rapid test kits, which test for the presence of nucleocapsid(N) protein, were photographed with a smartphone after results were ready. During the testing a known amount of N protein was added to the extraction buffer tube after which the following steps were performed according to manufacturer's instructions. This dataset was used to train deep learning models to classify various levels of N protein.
DOI: 10.6084/m9.figshare.7798268.v1
title: Y chromosome genetic data defined by 23 short tandem repeats in a Serbian population on the Balkan Peninsula

description: <b>Background:</b> Serbs mainly live in the territory of the recently re-established state of Serbia. However, the turbulent history in the Balkan Peninsula has led to settlement of Serbs not only within present day Serbia, but also in different parts of neighbouring countries. <b>Aim:</b> To define polymorphisms of 23 Y-chromosomal short tandem repeat (STR) loci in a modern Serbian population from the central part of the Balkan Peninsula. <b>Subjects and methods:</b> The reference sample consisted of 303 men declared as Serbs over three generations. Localities of the collected materials include the territories of Serbia, Bosnia and Herzegovina, Croatia and Montenegro. DNA samples were typed using the PowerPlex<sup>®</sup>Y23 amplification kit. <b>Results:</b> The highest locus diversity was observed for DYS385 and DYS481. In this study the most abundant haplogroups were I2a, E1b1b, R1a and I1. The largest genetic distances between the Serbs and other close Southern Slavs were for the Macedonians and Slovenians. <b>Conclusion:</b> This study is the first one to define STR polymorphism of Serbian people not only from Serbia but also from other parts of the Balkan Peninsula. The presented genetic data may be useful in further examinations of the genesis and genetic structuring of the present-day Serbian gene pool.
DOI: 10.17632/67dxw92m4w
title: Inclination of the Earth's magnetic field and rock-magnetic characteristics preserved in the core Cz-07 (Lake Cuitzeo, Mexico)

description: The database contains two files that support the information from the ancient geomagnetic field recovered from the Cz-07 core of Lake Cuitzeo, located in Michoacán state, Mexico.

1. Magnetic Parameters.xls contains the measurements of χ, κ, NRM, SIRM, and ARM; as well as the interparametric relations obtained from these data: SIRM/k, ARM/k , ARM/SIRM, κFD %, S-300 and HIRM.
2. ChNRM.JR6 contains the raw data used for the determination of the inclination values of the ancient geomagnetic field. The file can be opened in Remasoft application from Chadima and Hrouda (2006) for data analysis.
DOI: 10.6084/m9.figshare.19398776.v1
title: CA3_pyramidal_cells_models_Linaro_et_al_2022

description: Data for the paper "Cell type-specific mechanisms of information transfer in data-driven biophysical models of hippocampal CA3 principal neurons" by D Linaro, MJ Levy and DL Hunt.<br>This zip file contains a folder for each figure of the paper, with a Jupyter notebook that can be used to plot the panels making up the corresponding figure.<br>For any question, please contact danielelinaro@gmail.com.<br>
DOI: 10.17632/bx44zfbwzn
title: The Interaction Between Pricing and Social Mission Fulfillment in Microfinance Institutions: A Cross-Regional and Income-Level Perspective [dataset]

description: The research dataset comprises both raw and processed data files designed to facilitate and expedite the review process while ensuring ease of data reuse, interpretation, and replication.
DOI: 10.17632/m6pvvhgtp6
title: Effectiveness of LLM-based AI Assistance for small business productivity (ALL DATA)

description: Includes all data collected during the study
DOI: 10.6084/m9.figshare.11371362.v1
title: supplement-Table1.pptx

description: Antibodies used for Bernardini et al
DOI: 10.6084/m9.figshare.16755097.v1
title: HORmon

description: Data folder for manuscript:"HORmon: automated annotation of human centromeres"Olga Kunyavskaya, Tatiana Dvorkina, Andrey V. Bzikadze, Ivan Alexandrov, Pavel A. Pevzner
DOI: 10.6084/m9.figshare.21606732.v3
title: <strong>Dynamic fecal microenvironment properties enable predictions and understanding of peripartum blood oxidative status and non-esterified fatty acids in dairy cows</strong>

description: Supplementary tables for <strong>Dynamic fecal microenvironment properties enable predictions and understanding of peripartum blood oxidative status and non-esterified fatty acids in dairy cows. </strong>
DOI: 10.6084/m9.figshare.6448382.v1
title: Coordinates of the liquid-vapor interface

description: X-ray images were parsed using an algorithm written in Python. The algorithm identified interfaces between the solid surface, vapor film, and ambient liquid. This allowed us to quantify the film thickness as a function of time.<br>Coordinates of the liquid-vapor interface, along with the film thickness are contained within the files for each experimental trial. <br><b>Data from experiments using a rough sphere: </b>RO1-lvInterface.zip, RO2-lvInterface.zip, RO3-lvInterface.zip, and RO4-lvInterface.zip<br><b>Data from experiments using a smooth sphere: </b>SM2-lvInterface.zip, SM3-lvInterface.zip, SM4-lvInterface.zip, and SM5-lvInterface.zip<br><b>Data from experiments using a thermoprobe: </b>TP1-lvInterface.zip, TP2-lvInterface.zip, and TP3-lvInterface.zip
DOI: 10.6084/m9.figshare.6887345.v2
title: Wellcome’s Open Access Policy Review – Consultation Analysis

description: Wellcome has conducted a review of its Open Access policy, with the aim of ensuring that publications stemming from our funding are used to maximise their benefit to health. Following extensive stakeholder consultation, Wellcome is pleased to make available the core outputs of these activities. <b>Researcher Survey </b>The following survey was shared with all current Wellcome grantholders. 1.1 Researcher Report (Redacted) 1.2 Researcher Survey Analysis <b>Expert Evidence Gathering Session </b>Representatives of publishers, academic institutions and funding organisations submitted written and verbal evidence, summarised here: 2.1 External Evidence Session – Delegate Written Submissions 2.2 External Evidence Session – Meeting Summary <b>Open Consultation </b>Following an open consultation, where permission has been given, full responses have been made available along with analysis in the following documents: 3.1 Open Consultation Analysis3.2 Open Consultation (data)<b>Focus Groups</b>We contracted The Nursery to undertake a series of focus groups looking at various Open Access options. The executive summary is provided here:4.1 Focus Groups Executive Summary<br>Version 2: updated 06/11/2018 to correct errors on page 2 of document 2.1<br>
DOI: 10.17632/5g6nmysjx5
title: Data for: THE FACE OF ANOTHER: ANONYMITY AND FACIAL SYMMETRY INFLUENCE COOPERATION IN SOCIAL DILEMMAS

description: Data from the article entitled: "THE FACE OF ANOTHER: ANONYMITY AND FACIAL SYMMETRY INFLUENCE COOPERATION IN SOCIAL DILEMMAS". The archive includes data from 176 males including age, facial masculinity, facial fluctuating asymmetry, right hand 2D:4D, and their behavior in different rounds of the Prisoner's dilemma.
DOI: 10.17632/fm49hhpdg3
title: Separation-of-function mutants reveal the NF-kB-independent involvement of IkBα in the regulation of intestinal stemness

description: We have previously shown that the NF-κB inhibitor IkBa binds the chromatin together with PRC2 to confer responsiveness to PRC2 targets in the presence of inflammatory cues. This alternative function has been elusive in both physiological and disease conditions because of the predominant role of IkBa as a negative regulator of NF-κB. Here, we uniquely characterize the specific residues of IkBa that allow the generation of separation-of-function (SOF) mutants that are defective for either NF-κB-related (SOF NF-κB) or chromatin-related (SOF H2A,H4) activities. Expression of IkBa SOF NF-κB, but not SOF H2A/H4, is sufficient to negatively regulate a specific stemness program in intestinal cells, thereby rescuing the differentiation block imposed by IkBa deficiency. By ChIP assay, we demonstrated that IkBa binds to several stemness genes that are transcriptionally repressed upon IkBa SOF NF-κB induction. Our data suggest that SOF mutants provide an exclusive tool for studying IkBa functions in physiology and disease.
DOI: 10.17632/gbrjnh89zj
title: Complete dataset of the methane submodel, The Nutrition System for Dairy Cows (NS Dairy Cattle). Dairy Cattle Research Lab, Universidade Federal de Mato Grosso, Campus Sinop, Brazil

description: Complete dataset used to develop the methane submodel of The Nutrition System for Dairy Cows (NS Dairy Cattle). Dairy Cattle Research Laboratory, Universidade Federal de Mato Grosso, Campus Sinop, Brazil. 
Corresponding author: Dr. André Soares de Oliveira, e-mail: andre.oliveira@ufmt.br
DOI: 10.6084/m9.figshare.978884.v3
title: File 8. Static Mechanical Parameters.xlsx

description: This data file contains one worksheet containing raw data and descriptive statistics regarding static mechanical parameters obtained from force-distance curves of the spider silk fibres using SPIP software, and are described in its manual. The column descriptions for the raw data worksheet are as follows: COLUMN A – Sample Label COLUMN B – Maximum Load Force (Max Ld) COLUMN C – Maximum Pulling Force (Max Pull) COLUMN D – Snap In (Snap In) COLUMN E – Detachment Separation (Detach Sep) COLUMN F – Young’s Modulus (Youngs Mod) COLUMN G – Zero Indentation (Zero Ind) Column H – Dissipated Energy (Energy)
DOI: 10.6084/m9.figshare.1542535.v1
title: Middle-Class Neighbourhood Mutation Accumulation in Drosophila serrata

description: This file contains pedigree information for 22 generations and phenotype information for 21 generations of male Drosophila serrata. Founded from 120 sires of unknown parentage, 240 males were assigned to breeding pair each generation, and contribued 1 son and 1 daughter to the next generation. For each male, phenotype data from 8 cuticular hydrocarbon traits (characterised as log contrasts), wing size (centroid size) and 10 wing shape traits was collected.
DOI: 10.6084/m9.figshare.25883752.v2
title: Data for manuscript "Modular Arrangement of Synaptic and Intrinsic Homeostatic Plasticity within Visual Cortical Circuits, W. Wen, A. M. Prada, G. G. Turrigiano". (Feb 2025)

description: Neocortical circuits maintain network stability through homeostatic plasticity mechanisms that use negative feedback to adjust excitation/inhibition balance, but how various forms of homeostatic plasticity operate <i>in vivo</i> is not well-understood. To examine whether excitatory synaptic scaling and intrinsic homeostatic plasticity (IHP) are engaged in a hierarchical or modular manner, we perturbed different aspects of neocortical circuit activity both <i>in vitro</i> and <i>in vivo</i>, and found that synaptic scaling and IHP are independently induced by sensing altered spiking and NMDA receptor (NMDAR) signaling, respectively. Despite this initial separation, their expression mechanisms bear similarities in time course, requirement of tumor necrosis alpha (TNFa) signaling, and ion channel trafficking pathways. Sensory experiences that affect NMDAR but not spiking activity selectively trigger IHP in visual cortex without recruiting synaptic scaling, supporting a modular model where synaptic and intrinsic mechanisms serve distinct functions.
DOI: 10.6084/m9.figshare.27683220.v1
title: Deep learning models for enhancing cortical microtubule structures in tobacco BY-2 cells for AIVIA software

description: This dataset includes a series of deep learning models developed for enhancing cortical microtubule structures in tobacco BY-2 cells, designed to operate with the 2-D segmentation function of the AIVIA software. Each model was trained on a different number of images, with training set sizes ranging from N=2 to N=400. These models enable users to selectively enhance microtubule structures in confocal microscopy images, facilitating rapid and high-precision segmentation.<b>Included Files:</b>HlgakiLab_BY-YTRF_cMT_model_N=002.hdf5HlgakiLab_BY-YTRF_cMT_model_N=005.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=010.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=020.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=040.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=060.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=080.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=100.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=120.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=150.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=200.hdf5eHlgakiLab_BY-YTRF_cMT_model_N=400.hdf5e
DOI: 10.17632/fmb7448rvc
title: Data for: Understanding the relationship between online self-image expression and purchase intention in SNS games: A moderated mediation investigation

description: The data was collected from WeChat mini-game users.
DOI: 10.6084/m9.figshare.8269763.v1
title: Bad News Dataset

description: Dataset for Roozenbeek and van der Linden (2019) Fake news game confers psychological resistance against online misinformation. Palgrave Communications. <br><br>
DOI: 10.6084/m9.figshare.c.3288407_d4.v1
title: Extent of occurrences (EOOs)

description: Shapefiles representing the extent of occurrence (EOO) of each species having at least three occurrences as alpha shapes (concave hulls), with an alpha level of 6 degrees (see main text for further details).
DOI: 10.17632/4yrpghr5ns
title: Eagle Ford

description: Eagle Ford natural and saw cut fractures
DOI: 10.6084/m9.figshare.21687470.v1
title: Inter Country Input Output table from OECD

description: Inter Country Input Output table from OECD
DOI: 10.17632/7s4frszjmz
title: Daily bias-corrected weather data and daily simulated growth data of maize, millet, sorghum, and wheat in the changing climate of sub-Saharan Africa

description: The dataset described includes second bias corrected daily weather data using ground-based weather data and simulated crop growth data under potential and water-limited potential conditions for 109 sites across ten countries in SSA including Burkina Faso, Ghana, Mali, Niger, Nigeria, Ethiopia, Kenya, Tanzania, Uganda, and Zambia. Whereas the weather data covers all sites, the simulated growth data for the four crops (maize, millet, sorghum, wheat) covers subsets of the sites depending on the geographic distribution of cultivation areas for the given crop. The stations can represent 65% of the harvested area for maize, 90% for millet, 83% for sorghum, and 59% for wheat the four crops together can represent 72% of the total harvested area in those countries. The data covers three time periods: historical (1995-2014), 2030 (2020-2039), and 2050 (2040-2059).
DOI: 10.6084/m9.figshare.16852792.v1
title: Seagrass CO2 emissions

description: Data used in preparation of Science Advances manuscript: "Calcification-driven CO2 emissions exceed “Blue Carbon” sequestration in a carbonate seagrass meadow"<br><br>"BA_combined_EC.csv" contains the eddy covariance dataset combined with matching in-water measurements<br>"BA_PWSummary.xlsx" contains the porewater geochemical results that are presented in the model, and are used in the associated PROFILE model. <br><br>"BA_SedWater_Fluxes.xlsx" presents calculated sediment-water fluxes for a variety of parameters, resulting from the flow-through incubations. <br>"BA_solid_phase_summary.xlsx" reports geochemical measurements on solid-phase sediment collected during this study.
DOI: 10.6084/m9.figshare.28736564.v1
title: <b>Assessing cancer knowledge among pharmacy students in Jordan</b>

description: This file contains the validated online questionnaire used to assess cancer-related knowledge among pharmacy students in Jordan. The survey was carefully developed and distributed across various pharmacy schools and includes sections evaluating students’ knowledge of cancer in general, recognition of signs and symptoms, causes and risk factors, and screening recommendations.
DOI: 10.17632/89x8s56p5z
title: The Efficacy and Safety of Janus Kinase Inhibitors in Patients with Atopic Dermatitis: A Systematic Review and Meta-analysis

description: These data is a supplementary data for a manuscript entitled "The Efficacy and Safety of Janus Kinase Inhibitors in Patients with Atopic Dermatitis: A Systematic Review and Meta-analysis". In this study, we showed that JAK inhibitors are a promising treatment option for AD. Due to the higher risk of gastrointestinal disorders, nasopharyngitis and headache during oral JAKi treatments, more attention should be paid on the adverse effects of patients treated with oral JAKi. Further studies with long follow-up in the different conditions will be needed to fully elucidate the safety profile of the different JAK inhibitors.
DOI: 10.26188/21435219.v1
title: LC-MS raw data

description: Raw data for liquid chromatography coupled with mass spectrometry (LC-MS) experiments along with skyline template used to extract peak area from raw data.
DOI: 10.6084/m9.figshare.5082331.v6
title: Data from: The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms

description: The 3D meshes of the stony corals analysed in the publication of Reichert, J; Backes, A.; Schubert, P. & Wilke, T.<strong></strong><strong></strong> (accepted): The power of 3D fractal dimensions for comparative shape and structural complexity analyses of irregularly shaped organisms. Methods in Ecology and Evolution.
DOI: 10.17632/m6946vynhf
title: Electroacupuncture enhances the modulatory effects of escitalopram oxalate in depression patients

description: This data is derived from a clinical trial of acupuncture for depression.
DOI: 10.6084/m9.figshare.25846048.v1
title: Database of uniaxial compressive strengths for sandstone materials

description: This is a database of sandstone uniaxial compressive strengths from published sources.
DOI: 10.6084/m9.figshare.28399757.v1
title: Large Language Models for Material Property Predictions: elastic constant tensor prediction and materials design

description: Source code and data for paper entitled "Large Language Models for Material Property Predictions: elastic constant tensor prediction and materials design".
DOI: 10.6084/m9.figshare.28399832.v1
title: Metadata of our article 'Clinical Trials for Hepatitis Delta Virus in WHO African region: A neglected virus among neglected viruses'

description: This is the metadata used for analysis of our article.
DOI: 10.6084/m9.figshare.28788998.v4
title: Dataset for enhancing the virulence of G2a subtype PEDV by chimeric expression of G2c subtype Sgene.

description: This is a dataset for enhancing the virulence of G2a subtype PEDV by chimeric expression of G2c subtype S gene.
DOI: 10.17632/fr7n8bcybc
title: Dataset1

description: The use of the Electrical resistivity tomography (ERT) technique, with the support of geochemical analyses, contributes to establishing a reliable methodology and provides information to delimit the affected subsurface area by pig slurry.
Data of ERT and soil were taken in September 2020, using a SuperSting R8 resistivity meter using the dipole-dipole array consisting of a total of twenty-eight electrodes. 
Soil samples are taken from the core- samples in three selected slurry ponds located in Fuente Álamo municipality, Murcia region (SE Spain).
Data of  ERT values and physical-chemical analysis data were contrasted, by the statistical analysis run by SPSS Statistics v.23 software (IBM, Neconductivity York, NY, USA) to establish the non-parametric Spearman correlation
DOI: 10.17632/sn5zs5wnw9
title: Data for: Ultra-short term heart rate variability as a tool to assess changes in valence.

description: Z-scored RMSSD data from ultra-short term (30s) computation. Data is ordered in two sets (onset and induction) as described in the manuscript.