cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12423137
title: tcr_beta_synrep_set3_06.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12423137.v1
title: tcr_beta_synrep_set3_06.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12423134.v1
title: FePSi iron field and transport matrix

description: WIP for icechest project<br>
DOI: 10.6084/m9.figshare.12423245.v1
title: An Agent Based Model methodology for assessing spread and health systems burden for Covid-19 using a synthetic population from India

description: The attached files are supplementary documents for the research work mentioned in the title: <br>1. The attached excel file contains the synthetic population data, indicating the number of people present in each state on a given day for all the three scenarios. The readers shall acquire the data from the author(s)/ coauthors of this manuscript. <i></i><br>2. Supplementary figures and tables are attached in the word document.
DOI: 10.6084/m9.figshare.12422654
title: tcr_beta_synrep_set3_04.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12423005
title: tcr_beta_synrep_set3_05.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12423005.v1
title: tcr_beta_synrep_set3_05.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12422654.v1
title: tcr_beta_synrep_set3_04.txt.bz2

description: Synthetic T cell receptor beta chain repertoire generated using IGoR software. <br><br>Record format: V-gene D-gene J-gene amino-acid-CDR3<br>Where CDR3 contains anchor residues (V-gene Cys, J-gene Phe/Val)
DOI: 10.6084/m9.figshare.12422594
title: Additional file 6 of A tissue level atlas of the healthy human virome

description: Additional file 6: Table S5 Information on the GTEx samples.
DOI: 10.6084/m9.figshare.12422588
title: Additional file 5 of A tissue level atlas of the healthy human virome

description: Additional file 5: Table S4 List of the genomic positions of the masked regions in each viral genome.
DOI: 10.6084/m9.figshare.12422594.v1
title: Additional file 6 of A tissue level atlas of the healthy human virome

description: Additional file 6: Table S5 Information on the GTEx samples.
DOI: 10.6084/m9.figshare.12422588.v1
title: Additional file 5 of A tissue level atlas of the healthy human virome

description: Additional file 5: Table S4 List of the genomic positions of the masked regions in each viral genome.
DOI: 10.6084/m9.figshare.12422576
title: Additional file 3 of A tissue level atlas of the healthy human virome

description: Additional file 3: Table S3 Read count of the respective 39 viral species detected in this study.
DOI: 10.6084/m9.figshare.12422564
title: Additional file 1 of A tissue level atlas of the healthy human virome

description: Additional file 1: Table S1 Information on the RNA-Seq dataset used in this study.
DOI: 10.6084/m9.figshare.12422570
title: Additional file 2 of A tissue level atlas of the healthy human virome

description: Additional file 2: Table S2 List of the 39 viral species detected in this study.
DOI: 10.6084/m9.figshare.12422576.v1
title: Additional file 3 of A tissue level atlas of the healthy human virome

description: Additional file 3: Table S3 Read count of the respective 39 viral species detected in this study.
DOI: 10.6084/m9.figshare.12422558
title: Additional file 12 of A tissue level atlas of the healthy human virome

description: Additional file 12: Table S7. Information on the prokaryotic genome sequences used in this study.
DOI: 10.6084/m9.figshare.12422564.v1
title: Additional file 1 of A tissue level atlas of the healthy human virome

description: Additional file 1: Table S1 Information on the RNA-Seq dataset used in this study.
DOI: 10.6084/m9.figshare.12422570.v1
title: Additional file 2 of A tissue level atlas of the healthy human virome

description: Additional file 2: Table S2 List of the 39 viral species detected in this study.
DOI: 10.6084/m9.figshare.12422555
title: Additional file 11 of A tissue level atlas of the healthy human virome

description: Additional file 11: Table S6 Information on the viral genome sequences used in this study.
DOI: 10.6084/m9.figshare.12422558.v1
title: Additional file 12 of A tissue level atlas of the healthy human virome

description: Additional file 12: Table S7. Information on the prokaryotic genome sequences used in this study.
DOI: 10.6084/m9.figshare.12422555.v1
title: Additional file 11 of A tissue level atlas of the healthy human virome

description: Additional file 11: Table S6 Information on the viral genome sequences used in this study.
DOI: 10.6084/m9.figshare.12422531
title: Additional file 2 of Trends, prevalence and associated factors of obesity among adults in a rural community in Thailand: serial cross-sectional surveys, 2012 and 2018

description: Additional file 2. An additional table, univariate analysis factors associated with obesity among adults in a rural community in 2018 (n = 627).
DOI: 10.6084/m9.figshare.12422531.v1
title: Additional file 2 of Trends, prevalence and associated factors of obesity among adults in a rural community in Thailand: serial cross-sectional surveys, 2012 and 2018

description: Additional file 2. An additional table, univariate analysis factors associated with obesity among adults in a rural community in 2018 (n = 627).
DOI: 10.6084/m9.figshare.12422459
title: Additional file 1 of Identifying disparities in patient-centered care experiences between non-Latino white and black men: results from the 2008-2016 Medical Expenditure Panel Survey

description: Additional file 1: Figure S1. Detailed list of the questions, and the original scaling, used to assess each of the six domains of health care experiences. Table S1. Logistic Regression Models for personal primary care provider domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S2. Logistic Regression Models for enhanced access to care domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S3. Logistic Regression Models for patient-provider communication domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S4. Logistic Regression Models for patient centered care domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S5. Logistic Regression Models for patient care coordination indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S6. Logistic Regression Models for care comprehensiveness indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016. Table S7. Detailed Results from Oaxaca decomposition techniques adapted for binary outcomes using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Medical Expenditures Panel Survey.
DOI: 10.6084/m9.figshare.12422432
title: Additional file 2 of Transcriptional profiling of multiple system atrophy cerebellar tissue highlights differences between the parkinsonian and cerebellar sub-types of the disease

description: Additional file 2 Table S1. Differentially expressed genes detected in the cohort 1 and cothort 2 in MSA. Table S2. Differentially expressed genes detected in the cohort 1 and cothort 2 in MSA-P. Table S3. Differentially expressed genes detected in the MSA-C in cohort 1 and 2 ranked by p-value. Table S4: Complete significant Results of the p-value combination for MSA (MSA-P + MSA-C). Table S5: Complete significant results of the p-value combination for MSA-P. Table S6: Complete significant results after p-value combination of the differential expression results from the two MSA-C cohorts. Table S7. Differentially expressed genes in SND (A) and OPCA (B) MSA patients from cohort 2. Genes significant also stratifying by the corresponding clinical subtype are reported in grey (MSA-P/SND or MSA-C/OPCA). Table S8. Complete results of the functional network enrichment analysis for the DEGs detected in MSA-C. Table S9. Differentially expressed genes detected in the comparison MSA-C vs MSA-P in cohort 1. No differentially expressed genes were detected in cohort 2. Table S10: Top 10 results after p-value combination of the differential expression results (MSA-C vs MSA-P) from the two MSA-C cohorts. No genes showed significance after multiple test correction. Table S11. Differentially expressed genes from the comparison OPCA vs SND patients from cohort 2. Table S12. Results of the GO analysis from the 156 DEGs obtained in the comparison OPCA vs SND. Table S13. Enrichment of AD genes (AMP-AD datasets) among MSA-C Differentially expressed genes. (A) Enrichment analysis run using different DEGs cutoff to select AD genes. (B) Enrichment analysis run using non-DEGs (adj p ≥ 0.950). Table S14. Overlap between MSA-C DEGs, AD temporal cortex and AD parahippocampal gyrus (data from AMP-AD). Genes are ranked by adj p in MSA-C. Table S15. Differentially expressed genes detected in oligodendrocytes (adj p
DOI: 10.6084/m9.figshare.12422459.v1
title: Additional file 1 of Identifying disparities in patient-centered care experiences between non-Latino white and black men: results from the 2008-2016 Medical Expenditure Panel Survey

description: Additional file 1: Figure S1. Detailed list of the questions, and the original scaling, used to assess each of the six domains of health care experiences. Table S1. Logistic Regression Models for personal primary care provider domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S2. Logistic Regression Models for enhanced access to care domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S3. Logistic Regression Models for patient-provider communication domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S4. Logistic Regression Models for patient centered care domain indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S5. Logistic Regression Models for patient care coordination indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Table S6. Logistic Regression Models for care comprehensiveness indicators using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016. Table S7. Detailed Results from Oaxaca decomposition techniques adapted for binary outcomes using Non-Latino Whites and Black participants ages 18–64 years from the 2008–2016 Medical Expenditures Panel Survey. Medical Expenditures Panel Survey.
DOI: 10.6084/m9.figshare.12422432.v1
title: Additional file 2 of Transcriptional profiling of multiple system atrophy cerebellar tissue highlights differences between the parkinsonian and cerebellar sub-types of the disease

description: Additional file 2 Table S1. Differentially expressed genes detected in the cohort 1 and cothort 2 in MSA. Table S2. Differentially expressed genes detected in the cohort 1 and cothort 2 in MSA-P. Table S3. Differentially expressed genes detected in the MSA-C in cohort 1 and 2 ranked by p-value. Table S4: Complete significant Results of the p-value combination for MSA (MSA-P + MSA-C). Table S5: Complete significant results of the p-value combination for MSA-P. Table S6: Complete significant results after p-value combination of the differential expression results from the two MSA-C cohorts. Table S7. Differentially expressed genes in SND (A) and OPCA (B) MSA patients from cohort 2. Genes significant also stratifying by the corresponding clinical subtype are reported in grey (MSA-P/SND or MSA-C/OPCA). Table S8. Complete results of the functional network enrichment analysis for the DEGs detected in MSA-C. Table S9. Differentially expressed genes detected in the comparison MSA-C vs MSA-P in cohort 1. No differentially expressed genes were detected in cohort 2. Table S10: Top 10 results after p-value combination of the differential expression results (MSA-C vs MSA-P) from the two MSA-C cohorts. No genes showed significance after multiple test correction. Table S11. Differentially expressed genes from the comparison OPCA vs SND patients from cohort 2. Table S12. Results of the GO analysis from the 156 DEGs obtained in the comparison OPCA vs SND. Table S13. Enrichment of AD genes (AMP-AD datasets) among MSA-C Differentially expressed genes. (A) Enrichment analysis run using different DEGs cutoff to select AD genes. (B) Enrichment analysis run using non-DEGs (adj p ≥ 0.950). Table S14. Overlap between MSA-C DEGs, AD temporal cortex and AD parahippocampal gyrus (data from AMP-AD). Genes are ranked by adj p in MSA-C. Table S15. Differentially expressed genes detected in oligodendrocytes (adj p
DOI: 10.6084/m9.figshare.12422330
title: Additional file 2 of Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

description: Additional file 2.
DOI: 10.6084/m9.figshare.12422330.v1
title: Additional file 2 of Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

description: Additional file 2.
DOI: 10.6084/m9.figshare.12422321
title: Additional file 1 of Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

description: Additional file 1.
DOI: 10.6084/m9.figshare.12422321.v1
title: Additional file 1 of Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

description: Additional file 1.
DOI: 10.6084/m9.figshare.12422300
title: Additional file 1 of Reproducibility of EEG functional connectivity in Alzheimer’s disease

description: Additional file 1: Supplementary Table 1. Difference in functional connectivity (FC) between SCD and AD subjects estimated by ANOVA model 1 (correction for age and gender). Supplementary Table 2. Difference in functional connectivity (FC) between SCD and AD subjects estimated by ANOVA model 2 (correction for age, gender and global relative power). Supplementary Figure S1. Topographical distribution of the median difference in Z-score of the PLI and AEC-c between the SCD and AD subjects. Supplementary Figure S2A & 2B. Summary of observed differences in ANOVA model 1, shown as effect size (Cohen’s d), between AD and SCD subjects in different regions for the AEC-c and PLI in each bandwidth. Supplementary Figure S3A-C. Correlation coefficients (r) between functional connectivity measures in the theta (A), alpha (B) and beta (C) bandwidths. In each figure, the coefficients on the right are corrected for changes in relative power and the coefficients on the left are the uncorrected values.
DOI: 10.6084/m9.figshare.12422186
title: Additional file 1 of Effect of short-term prescription opioids on DNA methylation of the OPRM1 promoter

description: Additional file1: Table S1. Participant-level characteristics and opioid use data. Table S2. Longitudinally collected sample-level data on DNA methylation chracteristics and cell estimates. Table S3. Top 1701 CpGs considering a genome-wide suggestive threshold of p-value= 1.5e-5. Table S4. Gene set enrichment analysis (GSEA) result using 1133 annotated genes obtained from 1701 CpGs. Table S5. CpG sites associated with opioid dosage at p ≤ 0.0001.
DOI: 10.6084/m9.figshare.12422186.v1
title: Additional file 1 of Effect of short-term prescription opioids on DNA methylation of the OPRM1 promoter

description: Additional file1: Table S1. Participant-level characteristics and opioid use data. Table S2. Longitudinally collected sample-level data on DNA methylation chracteristics and cell estimates. Table S3. Top 1701 CpGs considering a genome-wide suggestive threshold of p-value= 1.5e-5. Table S4. Gene set enrichment analysis (GSEA) result using 1133 annotated genes obtained from 1701 CpGs. Table S5. CpG sites associated with opioid dosage at p ≤ 0.0001.
DOI: 10.6084/m9.figshare.12422165
title: Additional file 2 of Exploring pathways to Hospital Care for Patients with Alzheimer’s disease and related dementias in rural South Western Uganda

description: Additional file 2. Code list generated after analysis with ATLAS.Ti version 7.
DOI: 10.6084/m9.figshare.12422165.v1
title: Additional file 2 of Exploring pathways to Hospital Care for Patients with Alzheimer’s disease and related dementias in rural South Western Uganda

description: Additional file 2. Code list generated after analysis with ATLAS.Ti version 7.
DOI: 10.6084/m9.figshare.12422135
title: Additional file 2 of LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function

description: Additional file 2: Table S1. Sequencing and mapping statistics of RRBS data. Table S2. Significant differentially methylated regions in bEECs 24 h control group compared to 0 h group. Table S3. Significant differentially methylated regions in LPS treated bEECs compared to 24 h control. Table S4. Genomic distribution of DMRs in LPS treated bEECs and annotated genes in the vicinity. Table S5. DMRs negatively correlated with gene expression data in LPS treated bEECs. Table S6. GO terms enrichment analysis for Biological Processes of genes associated with significant DMRs. Table S7. GO terms enrichment analysis for Molecular Functions of genes associated with significant DMRs. Table S8. Pathways analysis of genes associated with significant DMRs.
DOI: 10.6084/m9.figshare.12422135.v1
title: Additional file 2 of LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function

description: Additional file 2: Table S1. Sequencing and mapping statistics of RRBS data. Table S2. Significant differentially methylated regions in bEECs 24 h control group compared to 0 h group. Table S3. Significant differentially methylated regions in LPS treated bEECs compared to 24 h control. Table S4. Genomic distribution of DMRs in LPS treated bEECs and annotated genes in the vicinity. Table S5. DMRs negatively correlated with gene expression data in LPS treated bEECs. Table S6. GO terms enrichment analysis for Biological Processes of genes associated with significant DMRs. Table S7. GO terms enrichment analysis for Molecular Functions of genes associated with significant DMRs. Table S8. Pathways analysis of genes associated with significant DMRs.
DOI: 10.6084/m9.figshare.12422114
title: Additional file 2 of RNA-seq reveals downregulated osteochondral genes potentially related to tibia bacterial chondronecrosis with osteomyelitis in broilers

description: Additional file 2. Detailed table showing genes among all Biological Process.
DOI: 10.6084/m9.figshare.12422108
title: Additional file 4 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 4: Table S4. KEGG enrichment summary of unigenes undergone positive selection in three blueberry species.
DOI: 10.6084/m9.figshare.12422114.v1
title: Additional file 2 of RNA-seq reveals downregulated osteochondral genes potentially related to tibia bacterial chondronecrosis with osteomyelitis in broilers

description: Additional file 2. Detailed table showing genes among all Biological Process.
DOI: 10.6084/m9.figshare.12422099
title: Additional file 3 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 3: Table S3. GO enrichment summary of unigenes undergone positive selection in three blueberry species.
DOI: 10.6084/m9.figshare.12422105
title: Additional file 1 of RNA-seq reveals downregulated osteochondral genes potentially related to tibia bacterial chondronecrosis with osteomyelitis in broilers

description: Additional file 1. Detailed expressed values of all Differentially Expressed Genes, showing the name and description of each annotated gene, LogFoldChange, logCPM, FDR and gene Ensembl ID.
DOI: 10.6084/m9.figshare.12422108.v1
title: Additional file 4 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 4: Table S4. KEGG enrichment summary of unigenes undergone positive selection in three blueberry species.
DOI: 10.6084/m9.figshare.12422093
title: Additional file 2 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 2: Table S2. Annotation summary of unigenes undergone positive selection.
DOI: 10.6084/m9.figshare.12422099.v1
title: Additional file 3 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 3: Table S3. GO enrichment summary of unigenes undergone positive selection in three blueberry species.
DOI: 10.6084/m9.figshare.12422105.v1
title: Additional file 1 of RNA-seq reveals downregulated osteochondral genes potentially related to tibia bacterial chondronecrosis with osteomyelitis in broilers

description: Additional file 1. Detailed expressed values of all Differentially Expressed Genes, showing the name and description of each annotated gene, LogFoldChange, logCPM, FDR and gene Ensembl ID.
DOI: 10.6084/m9.figshare.12422087
title: Additional file 1 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 1: Table S1. Statistics of unigenes undergone selection effect in three blueberry species.
DOI: 10.6084/m9.figshare.12422093.v1
title: Additional file 2 of Molecular footprints of selection effects and whole genome duplication (WGD) events in three blueberry species: detected by transcriptome dataset

description: Additional file 2: Table S2. Annotation summary of unigenes undergone positive selection.
DOI: 10.6084/m9.figshare.12422084
title: Additional file 2 of Intramembrane proteolysis of an extracellular serine protease, epithin/PRSS14, enables its intracellular nuclear function

description: Additional file 2: Table S1. Differentially expressed genes (DEG) in the control and EICD-transfected cells. DEGs with p values less than 0.05 from the RNA-seq analysis are listed with gene information, FPKMs in the control and EICD-transfected cells, the binary logarithm of the ratio (M), and the geometric mean (A).