cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12023511.v1
title: Additional file 9 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 9: Tables S3. Statistical summary of taxa divergence over time in host and water microbial communities after recovery. These tables summarise significant taxonomic changes over time in water and host-microbial communities using Kruskal-Wallis and Wilcoxon tests, and by applying Benjamini-Hochberg correction.
DOI: 10.6084/m9.figshare.12023502.v1
title: Additional file 7 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 7: Table S1. Alpha-diversity dynamics over time and treatments. This statistical summary reveals richness or evenness changes over time (Tables 1 and 2) and between control and treatments (Table 3) in water and host communities. The significant changes of alpha-diversity indices between treatments and control were statistically tested using Kruskal-Wallis and Wilcoxon tests by applying Benjamini-Hochberg correction. The same statistics were used to compare alpha-diversity over time.
DOI: 10.6084/m9.figshare.12023505.v1
title: Additional file 8 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 8: Table S2. Statistical summary of taxa divergence between treatments and control after recovery. This table summarises significant taxonomic changes in water and host-microbial communities between control and treatments using the Fisher test, and by applying Benjamini-Hochberg correction.
DOI: 10.6084/m9.figshare.12023457
title: Additional file 13 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 13: Table S7. List of OTUs that accounted for those that did not fit the neutral model and were assigned to Mycoplasma species.
DOI: 10.6084/m9.figshare.12023460
title: Additional file 3 of Validity and reliability of a Hausa language questionnaire assessing information, motivation and Behavioural skills for malaria prevention during pregnancy

description: Additional file 3.
DOI: 10.6084/m9.figshare.12023451
title: Additional file 2 of Validity and reliability of a Hausa language questionnaire assessing information, motivation and Behavioural skills for malaria prevention during pregnancy

description: Additional file 2.
DOI: 10.6084/m9.figshare.12023457.v1
title: Additional file 13 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 13: Table S7. List of OTUs that accounted for those that did not fit the neutral model and were assigned to Mycoplasma species.
DOI: 10.6084/m9.figshare.12023460.v1
title: Additional file 3 of Validity and reliability of a Hausa language questionnaire assessing information, motivation and Behavioural skills for malaria prevention during pregnancy

description: Additional file 3.
DOI: 10.6084/m9.figshare.12023448
title: Additional file 12 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 12: Table S6. List of OTUs that accounted for those that did not fit the neutral model.
DOI: 10.6084/m9.figshare.12023451.v1
title: Additional file 2 of Validity and reliability of a Hausa language questionnaire assessing information, motivation and Behavioural skills for malaria prevention during pregnancy

description: Additional file 2.
DOI: 10.6084/m9.figshare.12023439
title: Additional file 11 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 11: Table S5. Statistics of the neutral model in host and water microbiomes. This table summarises the neutral model fit based on the following parameters; the migration rate (m.ci) within 95% of the confidence interval, the goodness of fit(R2), number of samples, richness, abundance cutoff, percentage of % neutral OTUs and non-neutral OTUs.
DOI: 10.6084/m9.figshare.12023439.v1
title: Additional file 11 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 11: Table S5. Statistics of the neutral model in host and water microbiomes. This table summarises the neutral model fit based on the following parameters; the migration rate (m.ci) within 95% of the confidence interval, the goodness of fit(R2), number of samples, richness, abundance cutoff, percentage of % neutral OTUs and non-neutral OTUs.
DOI: 10.6084/m9.figshare.12023448.v1
title: Additional file 12 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 12: Table S6. List of OTUs that accounted for those that did not fit the neutral model.
DOI: 10.6084/m9.figshare.12023430
title: Additional file 2 of Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics

description: Additional file 2: Table S1. Prevelance of formaldehyde crosslinking and glycine quencing variable modifications. Table S2. High and low confidence proteins. Table S3. Identifying characteristics of high and low confidence proteins. Table S4. Unique peptides of identified high and low confidence proteins. Table S5. Potential low confidence proteins. Table S6. Gene ontology enrichment of non-redundant biological processes GO terms. Table S7. Gene ontology enrichment of non-redundant molecular function GO terms. Table S8. Gene ontology enrichment of non-redundant cellular component GO terms. Table S9. Cloning and sequencing primers. Table S10. Plasmids.
DOI: 10.6084/m9.figshare.12023433
title: Additional file 10 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 10: Tables S4. Statistical summary of differential abundance between water and host microbial communities at all taxonomic levels. These tables summarise significant taxonomic changes between water and each of the host communities (skin and gut) at times T0 (sheet1), T3 (sheet2), and T5 (Sheet3) using Kruskal-Wallis and Wilcoxon tests, and by applying Benjamini-Hochberg correction.
DOI: 10.6084/m9.figshare.12023433.v1
title: Additional file 10 of Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

description: Additional file 10: Tables S4. Statistical summary of differential abundance between water and host microbial communities at all taxonomic levels. These tables summarise significant taxonomic changes between water and each of the host communities (skin and gut) at times T0 (sheet1), T3 (sheet2), and T5 (Sheet3) using Kruskal-Wallis and Wilcoxon tests, and by applying Benjamini-Hochberg correction.
DOI: 10.6084/m9.figshare.12023430.v1
title: Additional file 2 of Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics

description: Additional file 2: Table S1. Prevelance of formaldehyde crosslinking and glycine quencing variable modifications. Table S2. High and low confidence proteins. Table S3. Identifying characteristics of high and low confidence proteins. Table S4. Unique peptides of identified high and low confidence proteins. Table S5. Potential low confidence proteins. Table S6. Gene ontology enrichment of non-redundant biological processes GO terms. Table S7. Gene ontology enrichment of non-redundant molecular function GO terms. Table S8. Gene ontology enrichment of non-redundant cellular component GO terms. Table S9. Cloning and sequencing primers. Table S10. Plasmids.
DOI: 10.6084/m9.figshare.12023421
title: Additional file 1 of Promoter tools for further development of Aspergillus oryzae as a platform for fungal secondary metabolite production

description: Additional file 1: Table S1. Genes listed in order of the median of expression ranks in 83 transcriptome datasets. Table S2. The two nucleotide sequences confirmed to have promoter activities in this study. Table S3. Median of ranks and expression rank of top 13 genes in Table 1 evaluated from 83, 75 and 8 transcriptome datasets. Table S4. Primers for construction of transformants.
DOI: 10.6084/m9.figshare.12023421.v1
title: Additional file 1 of Promoter tools for further development of Aspergillus oryzae as a platform for fungal secondary metabolite production

description: Additional file 1: Table S1. Genes listed in order of the median of expression ranks in 83 transcriptome datasets. Table S2. The two nucleotide sequences confirmed to have promoter activities in this study. Table S3. Median of ranks and expression rank of top 13 genes in Table 1 evaluated from 83, 75 and 8 transcriptome datasets. Table S4. Primers for construction of transformants.
DOI: 10.5522/04/12023277
title: Mycobacterium tuberculosis within-host genetic diversity and acquired drug resistance (PhD thesis): Supplementary Spreadsheet 3

description: Supplementary Spreadsheet 3. List of whole genome sequences included in global alignments of lineage 2 and lineage 4 enriched for sequences enriched for <i>Rv0678</i> variants (Results Chapter 4).
DOI: 10.5522/04/12023271
title: Mycobacterium tuberculosis within-host genetic diversity and acquired drug resistance (PhD thesis): Supplementary Spreadsheet 2

description: Supplementary Spreadsheet 2. Accession details for samples included in the phylogenetic analysis of<i> Rv0678</i> mutations in Southern Africa (Results Chapter 3).
DOI: 10.5522/04/12023277.v1
title: Mycobacterium tuberculosis within-host genetic diversity and acquired drug resistance (PhD thesis): Supplementary Spreadsheet 3

description: Supplementary Spreadsheet 3. List of whole genome sequences included in global alignments of lineage 2 and lineage 4 enriched for sequences enriched for <i>Rv0678</i> variants (Results Chapter 4).
DOI: 10.5522/04/12023271.v1
title: Mycobacterium tuberculosis within-host genetic diversity and acquired drug resistance (PhD thesis): Supplementary Spreadsheet 2

description: Supplementary Spreadsheet 2. Accession details for samples included in the phylogenetic analysis of<i> Rv0678</i> mutations in Southern Africa (Results Chapter 3).
DOI: 10.5522/04/12023025
title: Data of craniopharyngioma management, recurrence and endocrine outcomes

description: Craniopharyngiomas are neoplasms of the sellar and parasellar region which develop from the epithelium of the primordial craniopharyngeal canal (Rathke's pouch). Despite their WHO classification as type 1 tumours, craniopharyngiomas are associated with multiple comorbidities including hypopituitarism, obesity and somnolence <sup> </sup>In this clinical study, we investigated the management and outcomes of a large cohort of patients with craniopharyngioma, both childhood and adult-onset, from three tertiary endocrine centres in the United Kingdom. The primary aim of this study was to examine temporal trends in the management of craniopharyngioma and their impact on long-term patient’s endocrine function.<br>
DOI: 10.6084/m9.figshare.12022782
title: Dataset for Responses of tundra plant community carbon flux to experimental warming, dominant species removal and elevation

description: Dataset of instantaneous CO2 fluxes, soil and air conditions and vegetation properties in a warming and dominant plant species removal experiment at two elevational sites near Abisko, Sweden. <br>
DOI: 10.6084/m9.figshare.12022737
title: Supplementary Material for: Safety and Efficacy of Prasugrel in Elderly/Low Body Weight Japanese Patients with Ischemic Stroke: Randomized PRASTRO-II

description: <b><i>Introduction:</i></b> The safety of prasugrel in elderly and/or low body weight Japanese patients with ischemic stroke who have a relatively high bleeding risk with antiplatelet therapy remains unknown. <b><i>Objective:</i></b> We aimed to investigate the safety and efficacy of long-term prasugrel monotherapy for stroke prevention compared with clopidogrel in elderly and/or low body weight Japanese patients with non-cardioembolic ischemic stroke. <b><i>Methods:</i></b> In this randomized, double-blind, comparative, phase III study, elderly (age ≥75 years) and/or low body weight (≤50 kg) Japanese patients with a previous history of non-cardioembolic ischemic stroke were assigned to a prasugrel 3.75 mg (PRA3.75) group, a prasugrel 2.5 mg (PRA2.5) group, or a clopidogrel 50 mg (CLO50) group and followed up for 48 weeks. The primary safety endpoint was the combined incidence of primary safety events, defined as life-threatening, major, and other clinically relevant bleeding. The efficacy endpoint was a composite of ischemic stroke, myocardial infarction, and death from other vascular causes. <b><i>Results:</i></b> A total of 654 patients (age 76.4 ± 7.3 years, body weight 55.6 ± 9.3 kg, women 43.9%) from 74 medical institutions within Japan were enrolled. The combined incidence (95% CI) of primary safety events was 4.2% (1.9–7.8%), 1.9% (0.5–4.7%), and 3.6% (1.6–6.9%) in the PRA3.75 group (<i>n</i> = 216), PRA2.5 group (<i>n</i> = 215), and CLO50 group (<i>n</i> = 223), respectively (hazard ratios [HR] PRA3.75/CLO50, 1.13 [0.44–2.93]; PRA2.5/CLO50, 0.51 [0.15–1.69]). The incidences of bleeding leading to treatment discontinuation (95% CI) were 2.3% (0.8–5.3%), 0.9% (0.1–3.3%), and 2.2% (0.7–5.2%) in the PRA3.75, PRA2.5, and CLO50 groups, respectively (HRs PRA3.75/CLO50, 1.01 [0.29–3.48]; PRA2.5/CLO50, 0.41 [0.08–2.12]). There was no significant difference in all bleeding events between groups. The incidence of ischemic stroke, myocardial infarction, and death from other vascular causes was lower, but not significantly so, in patients treated with prasugrel than in patients treated with clopidogrel: PRA3.75, 0.0% (0/216); PRA2.5, 3.3% (7/215); and CLO50, 3.6% (8/223; HRs PRA3.75/CLO50, 0.00 [0.00–0.00]; PRA2.5/CLO50, 0.90 [0.32–2.47]). <b><i>Conclusions:</i></b> Elderly and/or low body weight ­Japanese patients with previous non-cardioembolic ischemic stroke who received PRA3.75 showed similar results in terms of primary safety endpoint, and a numerically lower incidence of ischemic stroke, myocardial infarction, and death from other vascular causes, compared with those who received CLO50.
DOI: 10.6084/m9.figshare.12022551
title: LiteratureReviewMastersThesis.xlsx

description: Excel sheet used to assist in conducting systematic literature reviews for my Master's Thesis
DOI: 10.6084/m9.figshare.12022548
title: Immune mediated haemolytic anaemia and thrombocytopenia in 27 adult equids data.xlsx

description: Retrospective case control study, clinical data from 27 Equids with immune mediated haemolytic anaemia, immune mediated thrombocytopenia or both conditions concurrently.
DOI: 10.6084/m9.figshare.12022494
title: Supplementary Material for: The Mediating Effect of Embitterment on the Relationships between Anxiety, Depression, and Suicidality

description: Medicine
DOI: 10.6084/m9.figshare.12022548.v1
title: Immune mediated haemolytic anaemia and thrombocytopenia in 27 adult equids data.xlsx

description: Retrospective case control study, clinical data from 27 Equids with immune mediated haemolytic anaemia, immune mediated thrombocytopenia or both conditions concurrently.
DOI: 10.6084/m9.figshare.12022494.v1
title: Supplementary Material for: The Mediating Effect of Embitterment on the Relationships between Anxiety, Depression, and Suicidality

description: Medicine
DOI: 10.6084/m9.figshare.12022485
title: Supplementary Material for: Continuous Glucose Monitoring Systems: Are They Useful for Evaluating Glycemic Control in Children with Hyperinsulinism?

description: <b><i>Background:</i></b> Effective treatment and close monitoring in children with congenital hyperinsulinism (HI) are important to prevent hypoglycemic-associated brain damage. The current monitoring approach involves measuring plasma glucose intermittently, but this does not provide a comprehensive assessment of glycemic control and may fail to detect episodes of hypoglycemia. <b><i>Objective:</i></b> To determine whether Dexcom G5®, a continuous glucose monitoring system (CGMS), is an accurate and effective method for monitoring glycemic control in children with HI. <b><i>Methods:</i></b> Cross-sectional, observational study in 15 children with HI. Participants wore a blinded Dexcom G5® device for 2 weeks. At the end of 2 weeks, data from the Dexcom G5® and home glucose meter were downloaded and analyzed. <b><i>Results:</i></b> Fourteen children (15–67 months) completed the study. Using Bland-Altman analysis, the mean (SD) difference between 1,155 paired CGM and glucose meter readings was –8.09 (53.76). The sensitivity and specificity of CGM to detect hypoglycemia (&lt;70 mg/dL) were 86 and 81.4%, respectively. The positive predictive values for hypoglycemia and severe hypoglycemia (&lt;54 mg/dL) detected by CGM were low (50.3 and 14.8%, respectively), while the negative predictive values were high (96.4% for glucose &lt;70 mg/dL and 99.1% for glucose &lt;54 mg/dL). <b><i>Conclusion:</i></b> Our study showed that CGM is not a reliable method to monitor for hypoglycemia, given the high number of false positive hypoglycemia readings. However, CGM can be useful in preventing unnecessary checks by glucose meter during times of normoglycemia. Therefore, the benefits of using CGM in patients with HI would be in guiding the need to check plasma glucose by glucose meter rather than point accuracy.
DOI: 10.6084/m9.figshare.12022485.v1
title: Supplementary Material for: Continuous Glucose Monitoring Systems: Are They Useful for Evaluating Glycemic Control in Children with Hyperinsulinism?

description: <b><i>Background:</i></b> Effective treatment and close monitoring in children with congenital hyperinsulinism (HI) are important to prevent hypoglycemic-associated brain damage. The current monitoring approach involves measuring plasma glucose intermittently, but this does not provide a comprehensive assessment of glycemic control and may fail to detect episodes of hypoglycemia. <b><i>Objective:</i></b> To determine whether Dexcom G5®, a continuous glucose monitoring system (CGMS), is an accurate and effective method for monitoring glycemic control in children with HI. <b><i>Methods:</i></b> Cross-sectional, observational study in 15 children with HI. Participants wore a blinded Dexcom G5® device for 2 weeks. At the end of 2 weeks, data from the Dexcom G5® and home glucose meter were downloaded and analyzed. <b><i>Results:</i></b> Fourteen children (15–67 months) completed the study. Using Bland-Altman analysis, the mean (SD) difference between 1,155 paired CGM and glucose meter readings was –8.09 (53.76). The sensitivity and specificity of CGM to detect hypoglycemia (&lt;70 mg/dL) were 86 and 81.4%, respectively. The positive predictive values for hypoglycemia and severe hypoglycemia (&lt;54 mg/dL) detected by CGM were low (50.3 and 14.8%, respectively), while the negative predictive values were high (96.4% for glucose &lt;70 mg/dL and 99.1% for glucose &lt;54 mg/dL). <b><i>Conclusion:</i></b> Our study showed that CGM is not a reliable method to monitor for hypoglycemia, given the high number of false positive hypoglycemia readings. However, CGM can be useful in preventing unnecessary checks by glucose meter during times of normoglycemia. Therefore, the benefits of using CGM in patients with HI would be in guiding the need to check plasma glucose by glucose meter rather than point accuracy.
DOI: 10.6084/m9.figshare.12022380
title: Hot Plasma Effect Data

description: The parameter <i>R</i> as a function of the equatorial pitch angle α<sub>eq</sub> and kinetic energy <i>E</i> of electrons at the expected resonance locations. Simulation results for the electrons with different initial equatorial pitch angle. The refractive index along latitude, the resonance latitude, the resonance, and the parameter <i>R</i> as a function of α<sub>eq</sub> for 4 MeV and 6 MeV electrons.The advection coefficients and diffusion coefficients for 6 MeV electrons.
DOI: 10.6084/m9.figshare.12022368
title: Origin and dispersal of <i>Homalictus</i> (Apoidea: Halictidae) across Australia, Papua New Guinea and Pacific

description: The halictine bee genus <i>Homalictus</i> (Apoidea: Halictidae) is distributed broadly across south east Asia, Indonesia, Australia and the archipelagos of the Pacific. The group is well represented in the bee faunas of Australia and Papua New Guinea, but <i>Homalictus</i> is particularly important in the Pacific where it plays a keystone pollination role as the only endemic bee group in many islands. Understanding the origin and radiation of this genus is therefore important for understanding plant-bee co-evolution, not only in the Pacific, but the greater Oceania region. Previous studies have suggested that <i>Homalictus</i> has an Australian origin, and then dispersed northwards, but this is yet to be phylogenetically examined. Here we combine DNA sequences from the mitochondrial COI gene from <i>Homalictus</i> species from Papua New Guinea, the Pacific and Australia to infer the geographical and climatic origins of this group and subsequent dispersal events. Our results indicate a tropical origin for <i>Homalictus</i> in Australia, followed by multiple dispersals into the Pacific and subtropical, temperate and arid Australia. A tropical origin for <i>Homalictus</i> not only indicates the likely dispersal corridors for the ancestor of the group but has important implications for understanding social evolution in halictine bees.
DOI: 10.6084/m9.figshare.12022380.v2
title: Hot Plasma Effect Data

description: The parameter <i>R</i> as a function of the equatorial pitch angle α<sub>eq</sub> and kinetic energy <i>E</i> of electrons at the expected resonance locations. Simulation results for the electrons with different initial equatorial pitch angle. The refractive index along latitude, the resonance latitude, the resonance, and the parameter <i>R</i> as a function of α<sub>eq</sub> for 4 MeV and 6 MeV electrons.The advection coefficients and diffusion coefficients for 6 MeV electrons.
DOI: 10.6084/m9.figshare.12022368.v1
title: Origin and dispersal of <i>Homalictus</i> (Apoidea: Halictidae) across Australia, Papua New Guinea and Pacific

description: The halictine bee genus <i>Homalictus</i> (Apoidea: Halictidae) is distributed broadly across south east Asia, Indonesia, Australia and the archipelagos of the Pacific. The group is well represented in the bee faunas of Australia and Papua New Guinea, but <i>Homalictus</i> is particularly important in the Pacific where it plays a keystone pollination role as the only endemic bee group in many islands. Understanding the origin and radiation of this genus is therefore important for understanding plant-bee co-evolution, not only in the Pacific, but the greater Oceania region. Previous studies have suggested that <i>Homalictus</i> has an Australian origin, and then dispersed northwards, but this is yet to be phylogenetically examined. Here we combine DNA sequences from the mitochondrial COI gene from <i>Homalictus</i> species from Papua New Guinea, the Pacific and Australia to infer the geographical and climatic origins of this group and subsequent dispersal events. Our results indicate a tropical origin for <i>Homalictus</i> in Australia, followed by multiple dispersals into the Pacific and subtropical, temperate and arid Australia. A tropical origin for <i>Homalictus</i> not only indicates the likely dispersal corridors for the ancestor of the group but has important implications for understanding social evolution in halictine bees.
DOI: 10.6084/m9.figshare.12022380.v1
title: Hot Plasma Effect Data

description: The parameter <i>R</i> as a function of the equatorial pitch angle α<sub>eq</sub> and kinetic energy <i>E</i> of electrons at the expected resonance locations. Simulation results for the electrons with different initial equatorial pitch angle. The refractive index along latitude, the resonance latitude, the resonance, and the parameter <i>R</i> as a function of α<sub>eq</sub> for 4 MeV and 6 MeV electrons.