cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3634880_d9
title: Additional file 13: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Description of linkage disequilibrium (LD) block haplotypes in the pea-Aphanomyces collection. (a) LD blocks are named as described in Additional file 11; (b) Each LD block is subdivided into marker haplotypes according to its allelic composition. Marker haplotypes are named with the LD block name followed by an Arabic numeral. Only haplotypes without missing values or heterozygous markers are shown; For each LD block: (c) list of markers significantly detected by genome-wide association in the LD block; (d) the first line is a list of the markers included in the LD block (detected markers in bold font and their markers in (LD) in plain font); (e) the second line is the genetic positions of the listed markers on the genetic map described in Additional file 11; (f) following lines are the pairwise LD r 2 values between each marker defined in the LD block and the marker detected by GWA; (g) For SNP markers, ‘AA’ and ‘BB’ are allele codes of Genome Studio analysis while for SSR markers, amplicon lengths are indicated. For each Aphanomyces resistance associated marker, enhancing allele(s) is in bold dark green font and unfavourable allele(s) in bold dark red font; (h) the first line is the list of the variables significantly associated with a marker in the LD block, variables are described as in Additional file 4; (i) next lines are p-values of the marker-trait associations; (j) grey or coloured lines are mean phenotypic values ± standard error for marker haplotypes carried by more than 5 % of the lines from the pea-Aphanomyces collection, letters indicate significantly different means (Tukey-HSD, α &lt; 0.05); dark green and red haplotypes: favourable and unfavourable haplotypes of the LD block, respectively, as defined in the Materiel and Methods section of the manuscript. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3634880_d11
title: Additional file 17: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Genotyping data of the pea-Aphanomyces collection used for the GWA analysis before filters and imputation. NA: missing data. (a) Morphological gene genotyping data are coded “AA” when phenotypes are white flowers, normal leaves or smooth seeds for A, Af and R genes, respectively, and “BB” when they are colored flowers, afila leaves or wrinkled seeds; (b) PCR specific genotyping data are coded “AA” or “BB” when specific to the first or second allele; (c) SSR genotyping data are presented with the allele size (in bp); (d) SNP genotyping data are coded “AA” or “BB” when homozygous for the first or second allele, “AB” when heterozygous. (XLSX 7252 kb)
DOI: 10.6084/m9.figshare.c.3634880_d12
title: Additional file 12: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Information on the connectivity between projected maps. (a) HMap: consensus map from Hamon et al. [43]; (b) TMap: consensus map from Tayeh et al. [49]; (c) number of common markers between HMap and TMap for each linkage group (LG); (d): Number of inversions of marker positions on each LG; (e) number of inversions of marker positions in confidence intervals of the quantitative trait loci (QTL) described by Hamon et al. [43]. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3634880_d14
title: Additional file 1: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Description of the pea-Aphanomyces collection. (a) Line categories, as referred in Fig. 1b and Additional file 9 in legends; (b) Line codes in the Biological resource center (CRB) database of INRA Dijon, France; (c) Country codes ISO3166-1; (d) Cv: Cultivar, Bl: breeding line, Gmp: germplasm, Lv: local variety, Wa: wild accession; (e) Fd: fodder, Gd: garden; (f) Ws: winter sown, Ss: spring sown; (g) Nl: normal leaves, af: afila leaves, (h) W: white, Pu: purple, Pi: pink; (i) Wr: wrinkled, Sm: smooth; #: parents of GSP breeding programs; $: parents of RIL populations. (XLSX 29 kb)
DOI: 10.15468/dl.66cufa
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aegilops markgrafii (Greuter) K.Hammer"
 ]
}

 The dataset includes 404 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034191-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634880_d17
title: Additional file 4: of Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

description: Statistical analysis results of Aphanomyces resistance, earliness and height scoring data in the pea-Aphanomyces collection. (a) CC: controlled condition experiment, Field: Infested field experiment, RRI: Root rot index, ADI1: First aerial decline index, ADI2: Second aerial decline index, FLO1: date to 50 % bloom, FLO2: date to 100 % bloom, RIPE: date to 100 % dried plants, HT: height of plants, 09 to 13: year of experiment, All: global variables over all field environments, DI: Dijon-Epoisses, Burgundy, France, RI: Riec-sur-Belon, Brittany, France, REN: Rennes-Le Rheu, Brittany, France, KEN: Kendrick, ID, USA, ‘$’ Residual normality statistics are not exact but graphs of residuals are correct, (b) Mean, minimum, maximum and standard error in the pea-Aphanomyces collection; (c) ANOVA significance p-value codes: 0 &lt; ‘***’ &lt; 0.001≤ ‘**’ &lt; 0.01≤‘*’ &lt; 0.05≤ ‘ns’ &lt; 1; (d): Genotype effect; (e): Replicate effect; (f): Environment effect; (g): Genotype x Environment interaction effect; (h) mean-based heritability. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3634883_d1
title: Additional file 11: Table S8. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: List of differentially expressed TF genes after 30Â min in roots (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3634883_d2
title: Additional file 4: Table S2. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: Complete list of differentially expressed genes at the mRNA level at the different time points in leaves and roots (XLSX 1382Â kb)
DOI: 10.6084/m9.figshare.c.3634883_d4
title: Additional file 1: Table S1. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: Heat maps and box plots of all detectable metabolites of known identity. (XLSX 1476Â kb)
DOI: 10.6084/m9.figshare.c.3634883_d5
title: Additional file 18: Table S14. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: Differentially accumulated proteins during dehydration in soybean roots. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3634883_d6
title: Additional file 7: Table S4. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: Significant GO terms root 30Â min. Molecular Function and Biological Process category enriched GO terms. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3634883_d10
title: Additional file 12: Table S9. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: List of differentially expressed TF genes after 2Â h in leaves (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3634883_d8
title: Additional file 6: Table S3. of A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes

description: Significant GO terms root 1Â h. (XLSX 12Â kb)
DOI: 10.15468/dl.hjk2am
title: Occurrence Download

description: A dataset containing 708150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus colchicus Linnaeus, 1758)",
 "Year is not null",
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America)"
 ]
}

 The dataset includes 708150 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034187-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14466548
title: Interviewergebnisse: Nachhaltiger Tourismus in Kolumbien - Eine Analyse des Hotellerie-Sektors in San Agustín
DOI: 10.5281/zenodo.14466549
title: Interviewergebnisse: Nachhaltiger Tourismus in Kolumbien - Eine Analyse des Hotellerie-Sektors in San Agustín
DOI: 10.6084/m9.figshare.c.3635357_d1
title: Additional file 1: of Comparative evaluation of patients’ and physicians’ satisfaction with interferon beta-1b therapy

description: Full data set used for congruence analysis. Satisfaction with interferon beta-1b therapy as evaluated by patients and their physicians after 6 months of treatment and at the 24 months/study end visit. For a subgroup of patients, records of an electronic patient diary allowed to assess adherence to the injection schedule in the first 6 months and in the last 12 months of the study. Moreover, the table provides the information, for which patients drug-related adverse events were reported. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3635852_d4
title: MOESM1 of Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

description: Additional file 1: BIOM-File S1. Final operational taxonomic unit (OTU) table in BIOM format, format specification 1.0.0. Contained are clustered OTUs with specific OTU IDs, their supporting 16S rRNA gene sequence counts per sample, and as metadata taxonomic classification per OTU, descriptive labels per sample.
DOI: 10.6084/m9.figshare.c.3635861_d1
title: Additional file 1: Table S1. of Reserve-related activities and MRI metrics in multiple sclerosis patients and healthy controls: an observational study

description: Descriptive statistics of MRI measures. (XLS 10 kb)
DOI: 10.6084/m9.figshare.c.3635861_d2
title: Additional file 2: Table S2. of Reserve-related activities and MRI metrics in multiple sclerosis patients and healthy controls: an observational study

description: Results of non-parametric tests comparing strenuous change groups in relapsing-remitting patients. (XLS 13 kb)
DOI: 10.6084/m9.figshare.c.3636389_d1
title: Additional file 1: of Newly discovered population of Aedes japonicus japonicus (Diptera: Culicidae) in Upper Bavaria, Germany, and Salzburg, Austria, is closely related to the Austrian/Slovenian bush mosquito population

description: Pairwise population matrix of Neiâ  s genetic distances. The lower the values, the closer the genetic relatedness between the respective populations. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3636392_d2
title: Additional file 7: Table S5. of The transposable element environment of human genes is associated with histone and expression changes in cancer

description: GO function of down- and up-regulated genes between normal and cancer condition. (XLSX 870 kb)
DOI: 10.6084/m9.figshare.c.3636401_d1
title: Additional file 1: of Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

description: Supplementary tables. (ZIP 20649 kb)
DOI: 10.6084/m9.figshare.c.3636908_d1
title: Additional file 1: of The use of Amerindian charm plants in the Guianas

description: All reports on plant charms in the Guianas, retrieved from fieldwork, historic and recent literature and their characteristics. (ODS 48 kb)
DOI: 10.6084/m9.figshare.c.3636914_d1
title: Additional file 5: Table S6. of Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells

description: Systematic pathway up/downregulation following treatment.
DOI: 10.6084/m9.figshare.c.3636914_d5
title: Additional file 4: Table S5. of Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells

description: List of study accession numbers for EZH2 target meta-analysis.
DOI: 10.6084/m9.figshare.c.3636914_d9
title: Additional file 3: Table S4. of Dual EZH2 and EHMT2 histone methyltransferase inhibition increases biological efficacy in breast cancer cells

description: Described lists of EZH2 targets, including a set of consensus EZH2-suppressed genes.
DOI: 10.6084/m9.figshare.c.3637367_d4
title: Additional file 6: Figure S4. of Whole-genome bisulfite sequencing of cell-free DNA identifies signature associated with metastatic breast cancer

description: Integrated Genomics Viewer screenshots of WGBS and MiSeq sequencing results shown by gene for GP5 (A), HTR1B (B), PCDH10 (C), and UNC13A (D). The top panel, separated by a thick black line, shows a histogram representing the percent methylation value for each CpG locus in each amplicon for H, DFS, and MBC. In the lower panel, histograms display the percent unmethylated reads (blue) and percent methylated reads (red) at each assayed CpG locus. Below each of these histograms are the individual reads. (ZIP 634 kb)
DOI: 10.6084/m9.figshare.c.3637385_d1
title: Additional file 3: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

description: Per chromosome summary of copy-number variable regions (CNVRs) in the apple genome. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3637385_d3
title: Additional file 5: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

description: List of resistance (R) gene models located within copy-number variable regions (CNVRs) in the apple genome. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3637385_d2
title: Additional file 4: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

description: List of all gene models found within copy-number variable regions (CNVRs) in the apple genome. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3637385_d4
title: Additional file 2: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

description: List of copy-number variable regions (CNVRs) identified in the apple genome. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3637385_d5
title: Additional file 1: of The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh

description: Sequencing and quality control result for the 30 apple varieties. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3637907_d2
title: MOESM2 of AQP5-1364A/C polymorphism and the AQP5 expression influence sepsis survival and immune cell migration: a prospective laboratory and patient study

description: Additional file 2. Raw data from the figures are available as an excel file.
DOI: 10.6084/m9.figshare.c.3637925_d2
title: MOESM2 of Elucidation of the roles of adhE1 and adhE2 in the primary metabolism of Clostridium acetobutylicum by combining in-frame gene deletion and a quantitative system-scale approach

description: Additional file 2. Dataset S1. Transcriptomic data of the total open reading frames (ORFs).
DOI: 10.6084/m9.figshare.c.3637943_d1
title: Additional file 2: of Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida

description: List of the coding sequences (CDSs) being in the core genomes of the 43 aeromonad strains studied. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3637943_d3
title: Additional file 4: of Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida

description: List of the coding sequences (CDSs) being in the core genomes of the 8 A. salmonicida strains studied. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3637943_d4
title: Additional file 3: of Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida

description: The frequency of occurrence of amino acids and the %GC found for each A. salmonicida isolate. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3637970_d3
title: Additional file 6: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

description: Novel miRNA analysis. (A) Novel miRNA candidates identified to be conserved in at least two libraries, (B) Novel miRNA candidates with miRNA*, (C) Predicted and validated targets (with GO annotation) of the 26 novel miRNA candidates. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3637970_d4
title: Additional file 5: of Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage

description: The Solexa sequencing expression profile of known Oryza sativa mature miRNAs deposited in miRBase 21. Tables show mature miRNA names, mature miRNA sequences and the counts of expression level of (A) conserved and (B) non-conserved miRNA families from 12 small RNA libraries. (XLSX 68 kb)
DOI: 10.5281/zenodo.14466450
title: Vanishing Voice: ethnic people facing language problems

description: "I, Ritesh Karmaker, am the creator, data collector, and data curator for this dataset. I also serve as the primary contact person for any inquiries."
DOI: 10.5281/zenodo.14466451
title: Vanishing Voice: ethnic people facing language problems

description: "I, Ritesh Karmaker, am the creator, data collector, and data curator for this dataset. I also serve as the primary contact person for any inquiries."
DOI: 10.6084/m9.figshare.c.3638792_d1
title: Additional file 1: Table S1. of Draft genome sequence of Cellulomonas carbonis T26T and comparative analysis of six Cellulomonas genomes

description: Putative CAZy family and locus_tag number in the six cellulomonas genomes. Table S2. Putative cellulases in the six cellulomonas genomes. Table S3. Putative hemicellulases in the six cellulomonas genomes. Table S4. Putative amylases in the six cellulomonas genomes. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.c.3639401_d3
title: Additional file 6: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Copy number variation in PBD-ZSD patient and healthy control-derived iPSCs. A full list of copy number changes (CNCs) detected for iPSCs in this study is provided. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3639401_d5
title: Additional file 1: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Characterization of candidate iPSCs. A complete listing of the protein, genetic, epigenetic, and cell differentiation assays performed on the iPSCs generated in this study is provided. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3639401_d6
title: Additional file 4: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Gene expression analysis of ASGPR-positive hepatocyte-like cell cultures. A complete list of log-transformed gene expression scores from PBD-ZSD patient and healthy donor control ASGPR-positive hepatocyte-like cell cultures is provided. (XLSX 3605 kb)
DOI: 10.6084/m9.figshare.c.3639401_d8
title: Additional file 12: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Activities of hepatocyte-like cell cultures. Data relevant to the levels of albumin and urea produced in PBD-ZSD patient and healthy control hepatocyte-like cell cultures is provided. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3639401_d9
title: Additional file 9: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Pathway analysis of DEGS between PBD-ZSD patient and healthy donor-derived iPSCs. Gene Ontology (GO), KEGG, and IPA Pathway analyses of patient and healthy donor control fibroblasts are provided. (XLSX 546 kb)
DOI: 10.6084/m9.figshare.c.3639401_d10
title: Additional file 2: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Log-transformed gene expression scores from PBD-ZSD patient and healthy donor control fibroblasts and iPSCs. A complete list of log-transformed gene expression scores from PBD-ZSD patient and healthy donor control fibroblasts and iPSCs is provided. (XLSX 11932 kb)
DOI: 10.6084/m9.figshare.c.3639401_d11
title: Additional file 8: of Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities

description: Differentially expressed genes between PBD-ZSD patient and control healthy donor-derived iPSCs. A complete list of all gene expression scores and differentially expressed genes (DEGs) between PBD-ZSD patient and healthy donor control fibroblasts is provided. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3639419_d4
title: MOESM4 of Serum-derived exosomes from non-viremic animals previously exposed to the porcine respiratory and reproductive virus contain antigenic viral proteins

description: Additional file 4. Sus scrofa proteins identified by Maxquant/Andromeda analysis using nanoLC-MS/MS spectra. Porcine proteins were identified in exosomes by proteomic analyses and several molecular markers of exosomes are present in these samples such as CD5, CD9, CD81 and CD63.
DOI: 10.6084/m9.figshare.c.3639419_d5
title: MOESM1 of Serum-derived exosomes from non-viremic animals previously exposed to the porcine respiratory and reproductive virus contain antigenic viral proteins

description: Additional file 1. Codification and status of virus in blood and antibodies in porcine sera samples received. All samples were codified as soon as received in the laboratory and classified by virus and antibody status according to the RT-PCR and serology test for PRRSV.
DOI: 10.6084/m9.figshare.c.3639422_d2
title: Additional file 1: of Sequence conservation analysis and in silico human leukocyte antigen-peptide binding predictions for the Mtb72F and M72 tuberculosis candidate vaccine antigens

description: Predicted HLA class II binding peptides in Mtb72F. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3639422_d3
title: Additional file 3: of Sequence conservation analysis and in silico human leukocyte antigen-peptide binding predictions for the Mtb72F and M72 tuberculosis candidate vaccine antigens

description: Predicted 9-mer HLA class I peptide binding regions in Mtb72F. (XLSX 13Â kb)