cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f32p4/24
title: RAD-seq raw reads Sanguisorba_site25-2
DOI: 10.5061/dryad.f32p4/25
title: RAD-seq raw reads Dianthus_site2-1
DOI: 10.5061/dryad.f32p4/26
title: RAD-seq raw reads Dianthus_site5-1
DOI: 10.5061/dryad.f32p4/27
title: RAD-seq raw reads Dianthus_site5-2
DOI: 10.5061/dryad.f32p4/28
title: RAD-seq raw reads Dianthus_site8-1
DOI: 10.5061/dryad.f32p4/29
title: RAD-seq raw reads Dianthus_site9-1
DOI: 10.5061/dryad.f32p4/30
title: RAD-seq raw reads Dianthus_site12-1
DOI: 10.5061/dryad.f3r6799/1
title: LGMD R9 Murphy Annals Clin Trans Neurol 2019 public 200319

description: Anonymised MRI measurements (fat fraction), physical function tests and basic subject characteristics as described in the Data Availability statement of Murphy et al. (2019)
DOI: 10.5061/dryad.h0m01sf/1
title: Experimental evolution of polyandry in D. pseudoobscura

description: Data on 1) polyandry assays during 7 generations of experimental evolution, 2) female remating latency of evolved populations and ancestral isolines, 3) remating inhibition of tester females by males from evolved populations and ancestral isolines, and 4) reproductive output of individuals from evolved populations.
DOI: 10.5061/dryad.jj3ft18/2
title: soil_variables

description: Soil variables including cations and exchangeability from soil microcosms incubated over a period of 48 weeks.
DOI: 10.5061/dryad.k11r5b9/1
title: Mangan et al, raw data

description: All lab and field data.
DOI: 10.5061/dryad.k14t77p/1
title: arthropod biodiversity oil palm replanting

description: arthropod abundance by taxonomic group for first-cycle and second-cycle oil palm ages
DOI: 10.5061/dryad.k88v330/1
title: Data of Swiss Breeding Birds

description: Bird presence-absence data from the Swiss breeding bird atlas at a 1x1 km resolution.  [Schmid, H., Luder, R., Naef-Daenzer, B., Graf, R. & Zbinden, N. (1998) Schweizer Brutvogelatlas. Verbreitung der Brutvögel inder Schweiz und im Fürstentum Liechtenstein 1993-1996. Swiss Ornithological Institute,
Sempach, Switzerland].  These data were recorded over a four-year period (1993-1996) in usually three visits per year (two above the treeline) using a simplified territory mapping approach. We only considered species with at least 50 presences resulting in a total number of 56 forest bird species in the study region. Environmental predictor variables include climate, topography and vegetation structure at the same resolution as the species data. Please refer to main article and its Online Supplementary Material for description of the data. Geographic coordinates were removed.
DOI: 10.5061/dryad.k88v330/2
title: Data of Swiss National Forest Inventory

description: Tree species presence-absence data were obtained from the Swiss National Forest Inventory (NFI) . The NFI samples Switzerland on a regular grid (spacing 1.4 km), and in case the sample falls into forest it records forest characteristics in a maximal area of 50x50 m. We aggregated the NFI presence-absence data to 100x100 m plot size to match the minimum grain of available environmental data. We only considered species with at least 50 presences resulting in a total number of 63 tree and shrub species in the study region.  Environmental predictor variables include climate, topography and vegetation structure at the same resolution as the species data. Please refer to main article and its Online Supplementary Material for description of the data. Geographic coordinates were removed.
DOI: 10.5061/dryad.kb79121/51
title: lit-1_EMBD0387_GLS
DOI: 10.5061/dryad.kb79121/53
title: mbk-2_EMBD0077_GLS
DOI: 10.5061/dryad.kb79121/54
title: mbk-2_EMBD0077_MS
DOI: 10.5061/dryad.kb79121/55
title: mes-1_EMBD0043_GLS
DOI: 10.5061/dryad.kb79121/56
title: mes-1_EMBD0043_MS
DOI: 10.5061/dryad.kb79121/57
title: mex-3_EMBD0063_GLS
DOI: 10.5061/dryad.kb79121/58
title: mex-3_EMBD0063_MS
DOI: 10.5061/dryad.kb79121/59
title: mom-2_EMBD0386_GLS
DOI: 10.5061/dryad.kb79121/60
title: mom-2_EMBD0386_MS
DOI: 10.5061/dryad.kj67m68/1
title: Harmful algal growth rates and toxin contents under climate change

description: Growth rates and toxin content of multiple harmful algal species and strains derived from single strain laboratory culture experiments performed under varying temperature and/or CO2 conditions.
DOI: 10.5061/dryad.mt5q8m2/1
title: dryad-data-skarfur-2019

description: The data are comprised of total nests numbers of cormorant in Iceland 1994-2015, proportion of juveniles in september surveys, recruitment stocks of cod and saithe (from the Icelandic Marine Research Institute), as well as mean monthly temperatures for January and February (Stykkisholmur, Iceland) and finally the climate indices sub-polar gyre index (SPG-I; Berx and Payne), NAO (Hurrel) and Atlantic Multi-decadal Oscillation index AMO (Trenberth).
DOI: 10.5061/dryad.q499457/1
title: Behavioural data

description: Data of F. fusca larvae used in the experiments. File contains larvae colony information, sex of the larvae and whether they consumed an egg or not. Included also details of the eggs offered to larvae: the colony and species of eggs.
DOI: 10.5061/dryad.q499457/2
title: Hatching data

description: This data shows the hatching success of eggs of different Formica species used in the study.
DOI: 10.5061/dryad.q499457/3
title: Egg size data

description: This data contains measures of egg sizes of different Formica species used in this study
DOI: 10.5061/dryad.q499457/4
title: CHC data F. truncorum

description: This file contains the raw cuticular hydrocarbon peak areas of Formica truncorum eggs. Retention times and peak areas shown.
DOI: 10.5061/dryad.q499457/5
title: Larva genotypes used for sexing F.fusca

description: This file contains Formica fusca larval genotypes and allele frequencies over 8 microsatellite loci used for sexing
DOI: 10.5061/dryad.qc86g11/1
title: Supplementary Figure 1

description: Supplementary FIGURE 1. Composite images of entire diaphyseal cross sections of right humerus MNHN.F ALM435, left femur MNHN.F ALM497 and right tibia MNHN.F ALM369. Abbreviations: A, anterior; D, dorsal; L, lateral; M, medial; P, posterior; V, ventral. Scale bar: 1 mm
DOI: 10.5061/dryad.qc86g11/2
title: Supplementary Figure 2

description: Supplementary FIGURE 2. Optimization using parsimony of the presence of fibrolamellar bone in the stylopodial and zeugopodial bones of the Archosauromorpha analyzed to date (data summarized in Table 1). The topology is based on Nesbitt et al (2009) for Archosauriformes, and on Pritchard et al (2015) for non-archosauriform Archosauromorpha with the exception of the phylogenetic position of Aenigmastropheus parringtoni that has been taken from Ezcurra et al (2014). The minimum age of taxa has been taken from the Paleobiology Database. Black branches indicate presence of fibrolamellar bone, white branches indicate absence and black and white branches indicate uncertain character state.
DOI: 10.5061/dryad.qc86g11/3
title: Supplementary Figure 3

description: Supplementary FIGURE 3. Optimization using parsimony of the presence of fibrolamellar bone in the stylopodial and zeugopodial bones of the Archosauromorpha analyzed to date (data summarized in Table 1). The topology is based on Nesbitt et al (2009) for Archosauriformes, and on Ezcurra (2016) for non-archosauriform Archosauromorpha with the exception of the phylogenetic position of Aenigmastropheus parringtoni that has been taken from Ezcurra et al (2014). The minimum age of taxa has been taken from the Paleobiology Database. Black branches indicate presence of fibrolamellar bone, white branches indicate absence and black and white branches indicate uncertain character state.
DOI: 10.5061/dryad.qc86g11/4
title: Legends of Supplementary Figures

description: Legends of Supplementary Figures
DOI: 10.5061/dryad.sf2gt4k/1
title: Life history measurements of tropical Andean birds

description: These data were collected in the field from the Manu Biosphere Reserve, southeastern Peru between 2011-2016. Abbreviations of column headings are for apparent adult survival, phi; standard error, se; the top model selected using QAIC, QAIC_top_model; the mean elevation of capture locations for the species, cap_elev; basal metabolic rate, bmr; and estimated c-hat for each model used to adjust QAIC; chat.
DOI: 10.5061/dryad.t7f058k/1
title: Cold Shock Data - 18C Rearing

description: This data includes survival proportions for each DGRP line in both larvae and adults after a 1h cold shock at -5C and reared at 18C. Column A: DGRP genotype (line number), Column B: Lifestage (L=larva, A=adult), Column C: replicate number, Column D: total individuals assayed, Column E: number of individuals that survived, Column F: (Adults only) number of adult males that were assayed, Column G: (Adults only) number of adult females that were assayed, Column H: number of individuals that were scored as dead after assay, Column I: proportion of larvae or adults that survived the assay, Column J: number of males that survived or successfully eclosed (larval trial) after assay, Column K: number of females that survived or successfully eclosed (larval trial) after assay.
DOI: 10.5061/dryad.t7f058k/2
title: Cold Shock Data - 25C Rearing

description: This data includes survival proportions for each DGRP line in both larvae and adults after a 1h cold shock at -5C and reared at 25C. Column A: DGRP genotype (line number), Column B: Lifestage (L=larva, A=adult), Column C: replicate number, Column D: total individuals assayed, Column E: number of individuals that survived, Column F: (Adults only) number of adult males that were assayed, Column G: (Adults only) number of adult females that were assayed, Column H: number of individuals that were scored as dead after assay, Column I: proportion of larvae or adults that survived the assay, Column J: number of males that survived or successfully eclosed (larval trial) after assay, Column K: number of females that survived or successfully eclosed (larval trial) after assay.
DOI: 10.5061/dryad.t7f058k/3
title: Heat Shock Data - 18C Rearing

description: This data includes survival proportions for each DGRP line in both larvae and adults after a 1h heat shock at 38C and reared at 18C. Column A: DGRP genotype (line number), Column B: Lifestage (L=larva, A=adult), Column C: replicate number, Column D: total individuals assayed, Column E: number of individuals that survived, Column F: (Adults only) number of adult males that were assayed, Column G: (Adults only) number of adult females that were assayed, Column H: number of individuals that were scored as dead after assay, Column I: proportion of larvae or adults that survived the assay, Column J: number of males that survived or successfully eclosed (larval trial) after assay, Column K: number of females that survived or successfully eclosed (larval trial) after assay.
DOI: 10.5061/dryad.t7f058k/4
title: Heat Shock Data - 25C Rearing

description: This data includes survival proportions for each DGRP line in both larvae and adults after a 1h heat shock at 38C and reared at 25C. Column A: DGRP genotype (line number), Column B: Lifestage (L=larva, A=adult), Column C: replicate number, Column D: total individuals assayed, Column E: number of individuals that survived, Column F: (Adults only) number of adult males that were assayed, Column G: (Adults only) number of adult females that were assayed, Column H: number of individuals that were scored as dead after assay, Column I: proportion of larvae or adults that survived the assay, Column J: number of males that survived or successfully eclosed (larval trial) after assay, Column K: number of females that survived or successfully eclosed (larval trial) after assay.
DOI: 10.5061/dryad.th71ss0/1
title: Genotypes

description: Genotypes from microsatellite loci.
DOI: 10.5061/dryad.th71ss0/2
title: 01_CYTB_long

description: Cytochrome b long sequence alignment.
DOI: 10.5061/dryad.th71ss0/3
title: 02_CYTB_short

description: Cytochrome b short sequence alignment.
DOI: 10.5061/dryad.th71ss0/4
title: 03_DARC_phased

description: DARC phased sequence alignment.
DOI: 10.5061/dryad.th71ss0/5
title: 04_HPX_phased

description: HPX phased sequence alignment.
DOI: 10.5061/dryad.th71ss0/6
title: 05_SPTBN_phased

description: SPTBN1 phased sequence alignment.
DOI: 10.5061/dryad.th71ss0/7
title: 06_TF_phased

description: TF phased sequence alignment.
DOI: 10.5061/dryad.th71ss0/8
title: 07_OXA1L_phased

description: OXA1L phased sequence alignment.
DOI: 10.5061/dryad.th71ss0/9
title: 08_TG_phased

description: TG phased sequence alignment.
DOI: 10.5061/dryad.1b4p03d/1
title: data_Bairos-Novak_et_al_2019_JAE

description: Microsoft Excel spreadsheet of data used in the analysis of the publication "A Novel Alarm Signal in Aquatic Prey: Familiar Minnows Coordinate Group Defenses Against Predators Through Chemical Disturbance Cues" (see 'metadata' sheet inside .xlsx workbook).
DOI: 10.5061/dryad.1b4p03d/2
title: script_Bairos-Novak_et_al_2019_JAE

description: R script used in the analysis of the publication "A Novel Alarm Signal in Aquatic Prey: Familiar Minnows Coordinate Group Defenses Against Predators Through Chemical Disturbance Cues" (see comments throughout code for more information).
DOI: 10.5061/dryad.282bm46/1
title: Conti_ShrubAllometricDatabase

description: Database of individual allometric data (stem diameter, height, crown diameter) and aboveground ground biomass of shrub species compiled from existing literature. More details in the Metadata and Readme sheet in the file.
DOI: 10.5061/dryad.2mm56k2/1
title: Raw data for elephant combination call study

description: This file contains the raw data for a comparative study of combination calls across the three elephant species. Data includes species, population from which the call was recorded, call type, call order (if a combination call), sex, age class, and individual identity of the caller (if known), and the behavioral context of the call if known
DOI: 10.5061/dryad.337c68r/1
title: FE-2018-01094-sup-Data
DOI: 10.5061/dryad.48894fk/1
title: knot_covariance

description: Data file with all measurements of knot body body mass, pectoral muscle mass and gizzard mass. First tab within the excel sheet provides detail on each column in the main data table.
DOI: 10.5061/dryad.4r15q60/1
title: SAT1 Host BEAST File

description: BEAST data and priors for running a discrete trait model for host species transmission of FMD SAT1 in East Africa
DOI: 10.5061/dryad.4r15q60/2
title: SAT1 BEAST phylogeographic file

description: BEAST data and priors for running a discrete trait model for geographic transmission of FMD SAT1 in East Africa
DOI: 10.5061/dryad.4r15q60/3
title: SAT2 Host BEAST file

description: Contains data and prior for running a discrete trait model for host transmission of FMD SAT2 in east Africa
DOI: 10.5061/dryad.4r15q60/4
title: SAT2 Phylogeography BEAST file

description: Contains data and prior for running a discrete trait model for phylogeography of FMD SAT2 in east Africa
DOI: 10.5061/dryad.4r15q60/5
title: SAT1 sequences file

description: Contains sequences and their Genbank accession numbers used in the phylodynamic analyses
DOI: 10.5061/dryad.53sq7kn/4
title: Analysis code for Dataset 1

description: Sample analysis code to calculate power spectra of cursor angular velocity for all subjects in Dataset 1.
DOI: 10.5061/dryad.53sq7kn/5
title: Analysis code for Dataset 2

description: Sample analysis code to calculate cursor and force power spectra, amplitude responses and phase delays for all subjects in Dataset 2.
DOI: 10.5061/dryad.53sq7kn/6
title: Analysis code for Dataset 3

description: Sample analysis code to calculate cursor and local field potential power spectra, cursor-LFP coherence and LFP-LFP imaginary coherence spectra for all sessions in Dataset 3.
DOI: 10.5061/dryad.53sq7kn/7
title: Optimal Feedback Control model

description: Code to calculate transfer functions for an optimal feedback controller incorporating state estimation using delayed feedback. The code plots cursor and force amplitude responses and phase delay.
DOI: 10.5061/dryad.53sq7kn/8
title: Dataset 4 - Monkey tracking with feedback delays

description: This dataset contains behavioural and electrophysiological data from a second monkey performing visuomotor tracking with feedback delays of 0-600ms.
DOI: 10.5061/dryad.53sq7kn/9
title: Analysis code for Dataset 4

description: Sample analysis code to calculate cursor and local field potential power spectra, cursor-LFP coherence and LFP-LFP imaginary coherence spectra for all sessions in Dataset 4
DOI: 10.5061/dryad.5b2k785.1
title: Data from: Reciprocal abundance shifts of the intertidal sea stars, Evasterias troschelii and Pisaster ochraceus, following sea star wasting disease
DOI: 10.5061/dryad.5b2k785.1/1.1
title: EvasteriasPisasterSurvey_Table_2_Fig_1_data

description: Long term Evasterias and Pisaster population data in Burrard Inlet, British Columbia, Canada. Percent of maximum abundance (denoted as “percent_max”) for each species and proportion of each species within the sea star community (denoted as “prop_sp”), during winter surveys from 2008 to 2017. Each survey’s percent of maximum abundance was calculated using the maximum abundance recorded for that site during our surveys from 2008 to 2017. Data are split into “pre” and “post” estimated time of outbreak of wasting disease, n = 9 surveys for years before wasting and n = 40 surveys for years after wasting. Surveys are from 5 sites, and estimates of area surveyed at each site are provided. Salinity is opportunistically reported.
DOI: 10.5061/dryad.5b2k785.1/2.1
title: Table3_Fig_2_data

description: Breakdown of disease progression in Evasterias and Pisaster over 28 days, in terms of number of asymptomatic (“num_healthy”) and the number of surviving individuals remaining in a tank “(num_alive”), after experimental exposure to conspecifics with signs of SSWD. “Day” indicates the duration of experiment and “tank” indicates the replicate tanks of initially uninfected sea stars. “Census_sick” and “census_dead” indicates a binary assignment of 0 or 1, where 0 denotes more than half the population of 5 sea stars is healthy/alive and 1 denotes more than half the population is sick/dead. See supplement S1.2 for more details on the methods of the experiments.
DOI: 10.5061/dryad.5b2k785.1/3.1
title: TableS3_FigS3_data

description: Mean percent change in wet weight (grams) across competition treatments, from all three experiment rounds. Competition treatments are labeled by the number of sea stars held in a tank, and of what species. Evasterias is abbreviated with “Eva” and Pisaster is abbreviated with “Pi”. The interspecific treatment for Evasterias response was “Eva (2 Eva + 2 Pi)” and for Pisaster response was “Pi (2 Eva + 2 Pi)”. Each treatment was replicated three times per experiment (denoted as “tank” number), with the exception of experiment three, where the interspecific treatment was replicated four times, for a total of 9 replications and 10 replications respectively across all three experiments. Sample size varied per treatment as some sea stars developed signs of SSWD and thus were removed and replaced with uninfected sea stars. Replacement sea star weights were not included in the data set or growth analysis. For more details on the methods see supplement section S1.3.
DOI: 10.5061/dryad.5b2k785.2
title: Data from: Reciprocal abundance shifts of the intertidal sea stars, Evasterias troschelii and Pisaster ochraceus, following sea star wasting disease
DOI: 10.5061/dryad.5b2k785.2/1.2
title: EvasteriasPisasterSurvey_Table_2_Fig_1_data

description: Long term Evasterias and Pisaster population data in Burrard Inlet, British Columbia, Canada. Percent of maximum abundance (denoted as “percent_max”) for each species and proportion of each species within the sea star community (denoted as “prop_sp”), during winter surveys from 2008 to 2017. Each survey’s percent of maximum abundance was calculated using the maximum abundance recorded for that site during our surveys from 2008 to 2017. Data are split into “pre” and “post” estimated time of outbreak of wasting disease, n = 9 surveys for years before wasting and n = 40 surveys for years after wasting. Surveys are from 5 sites, and estimates of area surveyed at each site are provided. Salinity is opportunistically reported.
DOI: 10.5061/dryad.5b2k785.2/2.2
title: Table3_Fig_2_data

description: Breakdown of disease progression in Evasterias and Pisaster over 28 days, in terms of number of asymptomatic (“num_healthy”) and the number of surviving individuals remaining in a tank “(num_alive”), after experimental exposure to conspecifics with signs of SSWD. “Day” indicates the duration of experiment and “tank” indicates the replicate tanks of initially uninfected sea stars. “Census_sick” and “census_dead” indicates a binary assignment of 0 or 1, where 0 denotes more than half the population of 5 sea stars is healthy/alive and 1 denotes more than half the population is sick/dead. See supplement S1.2 for more details on the methods of the experiments.
DOI: 10.5061/dryad.5b2k785.2/3.2
title: TableS3_FigS3_data

description: Mean percent change in wet weight (grams) across competition treatments, from all three experiment rounds. Competition treatments are labeled by the number of sea stars held in a tank, and of what species. Evasterias is abbreviated with “Eva” and Pisaster is abbreviated with “Pi”. The interspecific treatment for Evasterias response was “Eva (2 Eva + 2 Pi)” and for Pisaster response was “Pi (2 Eva + 2 Pi)”. Each treatment was replicated three times per experiment (denoted as “tank” number), with the exception of experiment three, where the interspecific treatment was replicated four times, for a total of 9 replications and 10 replications respectively across all three experiments. Sample size varied per treatment as some sea stars developed signs of SSWD and thus were removed and replaced with uninfected sea stars. Replacement sea star weights were not included in the data set or growth analysis. For more details on the methods see supplement section S1.3.
DOI: 10.5061/dryad.5b2k785.2/4.2
title: Fig_S4_data

description: Seasonal abundance data for Pisaster and Evasterias for April 2016 to March 2017. Mean percent of maximum abundance (denoted as “percent_max”) and mean proportion of species in community (denoted as “prop_sp”), over the months of one year. Each survey’s percent of maximum abundance was calculated using the maximum abundance recorded for that site during our surveys in 2016/2017.Surveys are from 5 sites, and estimates of area surveyed at each site are provided. Salinity is opportunistically reported. See supplement section S1.1 for more details on the methods.
DOI: 10.5061/dryad.5cr6008/1
title: holst_et_al

description: The zip file comprises all information on the analyses of the three markers mitochondrial 16S rDNA, mitochondrial cytochrome c oxidase subunit I (COI) and nuclear 18S rDNA including multiple alignments, neighbour joining trees and maximum likelihood trees. For further information and for displaying the files, please read the README file (included in the zip file).
DOI: 10.5061/dryad.64964m0/1
title: LSDS-5YDM

description: The Lynn Sage Data Base (LSDB) contains information about patients who came to the Lynn Sage Comprehensive Breast Center at Northwestern Memorial Hospital for care. The Northwestern Medicine Enterprise Data Warehouse (NMEDW) is a joint initiative across the Northwestern University Feinberg School of Medicine and Northwestern Memorial HealthCare, which maintains comprehensive data obtain from EHRs.  Using the LSDB and the NMEDW, we curated a dataset named as the Lynn Sage Data Set with 5-year distant metastasis (LSDS-5YDM), which includes records on 6726 breast cancer patients including clinical features and distant metastasis. The records span 03/02/1990 to 07/28/2015.
DOI: 10.5061/dryad.68pt830/1
title: Appendix S1

description: Locality and climatic data for 76 species of reptiles and amphibians that have introduced populations in the United States of America.