cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2pf5x7
title: CCDC 2485329: Experimental Crystal Structure Determination

description: Related Article: Carmen L. M. Henel, Edwin Michel, Devin Zeitler, Olaf Hübner, Elisabeth Kaifer, Hans‐Jörg Himmel|2026|Chem.-Eur.J.|32|e03147|doi:10.1002/chem.202503147
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pf5y8
title: CCDC 2485330: Experimental Crystal Structure Determination

description: Related Article: Carmen L. M. Henel, Edwin Michel, Devin Zeitler, Olaf Hübner, Elisabeth Kaifer, Hans‐Jörg Himmel|2026|Chem.-Eur.J.|32|e03147|doi:10.1002/chem.202503147
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pg2gq
title: CCDC 2486183: Experimental Crystal Structure Determination

description: Related Article: Ryoji Tanaka|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pgcwf
title: CCDC 2486475: Experimental Crystal Structure Determination

description: Related Article: A. van der Lee, A. Meffre, M. Barboiu|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.kp25pk7
title: Data from: Testing reticulate evolution of four Vitis species from East Asia using restriction‐site associated DNA sequencing

description: Reticulate evolution is an important driving force of angiosperm
 evolution. It has been proposed as an important evolutionary process in
 Vitis subgenus Vitis. Events of natural hybridization and introgression of
 several taxa native to North America have been hypothesized and discussed.
 However, there is no convincing evidence of reticulate evolution reported
 for closely related Vitis taxa from East Asia. We aim to explore natural
 hybridization and introgression among four closely related Vitis taxa from
 East Asia (V. amurensis, V. romanetii, V. shenxiensis, and V. piasezkii)
 with the restriction-site associated DNA sequencing (RAD-seq) technique. A
 total of 46 accessions, covering the potential morphological and
 geographic variation of each species, are sequenced. Our results show a
 complex evolutionary pattern of the four Vitis species. The phylogenetic
 inference suggests that V. amurensis is monophyletic, however, V.
 romanetii, V. shenxiensis, and V. piasezkii each do not appear to be
 monophyletic. Significant signals of introgression in some accessions have
 been detected by population structure analyses. D-statistics analysis and
 population structure analyses support the presence of introgression
 between V. shenxiensis/V. piasezkii and V. romanetii in sympatric
 populations, but strong signal of admixture has not been recognized
 between distantly located populations. Our results provide strong evidence
 of reticulate evolution among V. romanetii, V. shenxiensis, and V.
 piasezkii.
description: RAD_Vitis_filter_VCFThe filtered VCF file containing SNPs detected from four Vitis species in East Asia and Vitis vinifera using RAD-seq.
DOI: 10.5517/ccdc.csd.cc2ph2hs
title: CCDC 2487145: Experimental Crystal Structure Determination

description: Related Article: Wurong Wu
|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/kzztcx
title: Taxonomic revision of Conobolbitina (Bolbitiaceae, Agaricales) based on collections from Jilin Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Song, Han-bing, Cheng, Hong, Han, Yu-fei, Luo, Zong-long, Bau, Tolgor (2026): Taxonomic revision of Conobolbitina (Bolbitiaceae, Agaricales) based on collections from Jilin Province, China. MycoKeys 127: 263-288, DOI: 10.3897/mycokeys.127.181095AbstractConobolbitina is a morphologically diverse transitional genus within the Bolbitiaceae. However, taxonomic confusion persists, as some of its species remain classified under other genera, and its section Verrucisporae has been recovered as paraphyletic. This study revises the subdivision of Conobolbitina using integrated morphological and phylogenetic analyses of specimens from Jilin Province, China. A combined dataset of the internal transcribed spacer (ITS), nuclear large subunit ribosomal DNA (nrLSU), and translation elongation factor 1 - alpha (tef 1 - α) sequences was analyzed using maximum likelihood (ML) and Bayesian inference (BI). Phylogenetic results revealed four major monophyletic clades within Conobolbitina, corresponding to its four sections. In sect. Conobolbitina, new combinations are proposed for two species, Con. sulcata and Con. striipes. In sect. Aeruginosa, Con. atrocyanea is newly combined. For sect. Verrucisporae, its circumscription is revised by excluding the taxa responsible for its paraphyly, and a new combination, Con. australis, is proposed. To accommodate the excluded taxa from sect. Verrucisporae, a new section, sect. Lignicola, is established based on morphological and phylogenetic evidence. Within this new section, three species, Con. glutinosa, Con. viscosa, and Con. sibirica, are newly combined, and two new species, Con. lignicola sp. nov. and Con. fuscoviolacea sp. nov., are described. Through these revisions, the taxonomic positions of several species are clarified, and the paraphyly of sect. Verrucisporae is resolved. In total, this study revises and recognizes 10 new taxonomic entities, including one new section, two new species, and seven new combinations. An identification key to the Chinese species of Conobolbitina is provided, along with morphological descriptions and line drawings for the two new species.
DOI: 10.5061/dryad.kv573c7
title: Data from: Conservation genetics of the endangered Del Mar manzanita (Arctostaphylos glandulosa supsp. crassifolia) based on RAD sequencing data

description: Del Mar manzanita (Arctostaphylos glandulosa Eastw. subsp. crassifolia
 (Jeps.) P.V. Wells) is a federally listed endangered shrub found in San
 Diego County, California and Baja California, Mexico. This manzanita forms
 part of the imperiled southern maritime chaparral of southwestern
 California and adjacent Baja California, Mexico. Del Mar manzanita is
 problematic to identify because of morphological intergradation with other
 subspecies of A. glandulosa. Such intergradation could result from
 biological phenomena, such as gene flow among subspecies. Alternatively,
 it could be that the current circumscription of the Del Mar manzanita is
 not correct, and that the morphological characters used to diagnose this
 subspecies are inaccurate indicators of underlying genetics. This
 situation leads to problems for conservation planning, where accurate
 identification of individual plants is essential. Here, we used
 high-throughput sequencing of restriction-site associated DNA markers
 (RADseq) to develop single nucleotide polymorphism (SNP) data for a large
 sample of putative Del Mar manzanita, and a small sample of closely
 related subspecies of A. glandulosa. We analyzed genetic relationships
 using a total of 65,964 SNPs, with the aim of testing whether
 morphological traits used to identify Del Mar manzanita are an accurate
 reflection of underlying genetic patterns. We conclude that vegetative
 morphology is a poor predictor of genetic patterns, and that the current
 morphology-based circumscription of Del Mar manzanita is probably in need
 of some change. However, due to the limited sampling of A. glandulosa
 subspecies in this study, it is not possible to determine the taxonomic
 limits of Del Mar manzanita using our SNP data.
description: Appendix_S1Morphological data.Appendix_S2Metadata for raw sequencing.Appendix_S3Raw SNP data for samples.Appendix_S4SNP data for all Arctostaphylos.Appendix_S5SNP data for smaller set of samples.Appendix_S6Results of Evanno method for assessing optimal K.Appendix_S7Results of Evanno Method for assessing optimal K.
DOI: 10.5061/dryad.b8226
title: Data from: Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

description: The ecological importance of viruses is now widely recognized, yet our
 limited knowledge of viral sequence space and virus-host interactions
 precludes accurate prediction of their roles and impacts. Here we mined
 publicly available bacterial and archaeal genomic datasets to identify
 12,498 high‑confidence viral genomes linked to their microbial hosts.
 These data augment public datasets 10-fold, provide first viral sequences
 for 13 new bacterial phyla including ecologically abundant phyla, and help
 taxonomically identify 7-38% of 'unknown' sequence space in
 viromes. Genome- and network-based classification was largely consistent
 with accepted viral taxonomy and suggested that (i) 264 new viral genera
 were identified (doubling known genera) and (ii) cross-taxon genomic
 recombination is limited. Further analyses provided empirical data on
 extrachromosomal prophages and co‑infection prevalences, as well as
 evaluation of in silico virus-host linkage predictions. Together these
 findings illustrate the value of mining viral signal from microbial
 genomes.
description: VirSorter Curated
 Dataset genbank file packageThis zip package
 includes the annotated genbank files (affiliation against PFAM and Refseq)
 of all viral sequences predicted in the VirSorter Curated Dataset,
 organized in different folders based on the host of the virus (i.e. the
 taxonomy of the genomic data in which the viral sequence was
 identified).VirSorter_Curated_Dataset_genbank-files.zip
DOI: 10.5061/dryad.315km76
title: Data from: Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome-wide sequence data for seven amphibians

description: High-throughput sequencing data have greatly improved our ability to
 understand the processes that contribute to current biodiversity patterns.
 The “vanishing refuge” diversification model is speculated for the coastal
 forests of eastern Africa, whereby some taxa have persisted and
 diversified between forest refugia, while others have switched to becoming
 generalists also present in non-forest habitats. Complex arrangements of
 geographical barriers (hydrology and topography) and ecological gradients
 between forest and non-forest habitats may have further influenced the
 region’s biodiversity, but elucidation of general diversification
 processes has been limited by lack of suitable data. Here, we explicitly
 test alternative diversification modes in the coastal forests using
 genome-wide single nucleotide polymorphisms, mtDNA, spatial and
 environmental data for three forest (Arthroleptis xenodactyloides,
 Leptopelis flavomaculatus and Afrixalus sylvaticus) and four generalist
 (Afrixalus fornasini, A. delicatus, Leptopelis concolor, L. argenteus)
 amphibians. Multiple analyses provide insight about divergence times,
 spatial population structure, dispersal barriers, environmental stability
 and demographic history. We reveal highly congruent intra-specific
 diversity and population structure across taxa, with most divergences
 occurring during the late Pliocene and Pleistocene. Although stability
 models support the existence of some forest refugia, dispersal barriers
 and demographic models point toward idiosyncratic diversification modes
 across taxa. We identify a consistent role for riverine barriers in the
 diversification of generalist taxa, but mechanisms of diversification are
 more complex for forest taxa and potentially include topographical
 barriers, forest refugia and ecological gradients. Our work demonstrates
 the complexity of diversification processes in this region, which vary
 between forest and generalist taxa, but also for ecologically similar
 species with shared population boundaries.
description: dataInput and output files
 for all analyses - ADMIXTURE, DAPC, BEAST, SNAPP, EEMS, dadi. Also
 included are STACKS output files and ENMsBarratt_et_al.zip
DOI: 10.15468/dl.jcfpgu
title: Occurrence Download

description: A dataset containing 12544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-114.28970 13.90204,-81.95835 13.90204,-81.95835 26.84593,-114.28970 26.84593,-114.28970 13.90204))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Syrphidae"
 ]
}

 The dataset includes 12544 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000380-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.j5d33
title: Data from: Mapping migration in a songbird using high-resolution genetic markers

description: Neotropical migratory birds are declining across the Western Hemisphere,
 but conservation efforts have been hampered by the inability to assess
 where migrants are most limited – the breeding grounds, migratory stopover
 sites, or wintering areas. A major challenge has been the lack of an
 efficient, reliable, and broadly applicable method for measuring the
 strength of migratory connections between populations across the annual
 cycle. Here we show how high-resolution genetic markers can be used to
 identify genetically distinct groups of a migratory bird, the
 Wilson's warbler (Cardellina pusilla), at fine enough spatial scales
 to facilitate assessing regional drivers of demographic trends. By
 screening 1626 samples using 96 highly divergent single nucleotide
 polymorphisms (SNPs) selected from a large pool of candidates (~450,000),
 we identify novel region-specific migratory routes and timetables of
 migration along the Pacific Flyway. Our results illustrate that
 high-resolution genetic markers are more reliable, precise, and amenable
 to high throughput screening than previously described intrinsic marking
 techniques, making them broadly applicable to large-scale monitoring and
 conservation of migratory organisms.
description: b3_croppedncdf format raster file for the base map. Derived from naturalearthdata.comwibreed_rastThe files wibreed_rast.nc and wiwinter_rast.nc are raster files of the range of Wilson's Warblers in the Americas. They were generated from shapefiles provided to us by BirdLife International. (BirdLife International and NatureServe (2012) Bird species distribution maps of the world. BirdLife International, Cambridge, UK and NatureServe, Arlington, USA). Persons interested in the range map should contact BirdLife International or NatureServe directly.wiwinter_rastThe files wibreed_rast.nc and wiwinter_rast.nc are raster files of the range of Wilson's Warblers in the Americas. They were generated from shapefiles provided to us by BirdLife International. (BirdLife International and NatureServe (2012) Bird species distribution maps of the world. BirdLife International, Cambridge, UK and NatureServe, Arlington, USA). Persons interested in the range map should contact BirdLife International or NatureServe directly.Data and scripts to do analysesThis was taken from the repository on GitHub at https://github.com/eriqande/wiwa-popgen It corresponds to tagged version: final-to-dryadwiwa-popgen-final-to-dryad.zip
DOI: 10.5281/zenodo.18274564
title: Multi-ancestry GWAS of severe pregnancy nausea and vomiting identifies risk loci associated with appetite, insulin signaling, and brain plasticity

description: Contains the GWAS meta analysis summary statistics from:

Multi-ancestry GWAS of severe pregnancy nausea and vomiting identifies risk loci associated with appetite, insulin signaling, and brain plasticity

Marlena Fejzo, Xinran Wang, Qing Tan, Julia Zöllner, Natàlia Pujol-Gualdo, Triin Laisk, Estonian Biobank Research Team, Sarah Finer, David A. van Heel, Genes & Health Research Team, Ben Brumpton, Laxmi Bhatta, Kristian Hveem, Elizabeth A. Jasper, Digna R. Velez Edwards, Jacklyn N. Hellwege, Todd Edwards, Gail P. Jarvik, Yuan Luo, Atlas Khan, Kimber MacGibbon, Yuan Gao, Gaoxiang Ge, Inna Averbukh, Erin Soon, Michael Angelo, Per Magnus, Stefan Johansson, Pål R. Njølstad, Artem Kim, Steven Gazal, Marc Vaudel, Chang Shu, Nicholas Mancuso. Nature Genetics, (in press), 2026.

 

Due to data use agreement, we are able to share only the top 10k association statistics that include 23andMe results. However, we have also uploaded all meta analysis results that exclude the inclusion of 23andMe.
DOI: 10.5061/dryad.4t5q5
title: Data from: Structure-function covariation with nonfeeding ecological variables influences evolution of feeding specialization in Carnivora

description: Skull shape convergence is pervasive among vertebrates. Although this is
 frequently inferred to indicate similar functional underpinnings, neither
 the specific structure-function linkages nor the selective environments in
 which the supposed functional adaptations arose are commonly identified
 and tested. We demonstrate that nonfeeding factors relating to sexual
 maturity and precipitation-related arboreality also can generate
 structure-function relationships in the skulls of carnivorans (dogs, cats,
 seals, and relatives) through covariation with masticatory performance. We
 estimated measures of masticatory performance related to ecological
 variables that covary with cranial shape in the mammalian order Carnivora,
 integrating geometric morphometrics and finite element analyses. Even
 after accounting for phylogenetic autocorrelation, cranial shapes are
 significantly correlated to both feeding and nonfeeding ecological
 variables, and covariation with both variable types generated significant
 masticatory performance gradients. This suggests that mechanisms of
 obligate shape covariation with nonfeeding variables can produce
 performance changes resembling those arising from feeding adaptations in
 Carnivora.
description: Tseng&Flynn_SciAdv_FEA_files_for_DryadMorphed skull models representing ecological categories or end values. In Strand7 format. README file included in zipped folder.Tseng&Flynn_SciAdv_GeometricMorphometrics_files_for_DryadLandmark datasets in txt format, generated by MorphoJ. README file included in zipped folder.Tseng&Flynn_SciAdv_Mesquite_files_for_DryadTopology sensitivity analysis files in Mesquite format. For details on data source for each topology and branch length configuration, see publication and supporting information. README file included in zipped folder.
DOI: 10.5281/zenodo.18274563
title: Multi-ancestry GWAS of severe pregnancy nausea and vomiting identifies risk loci associated with appetite, insulin signaling, and brain plasticity

description: Contains the GWAS meta analysis summary statistics from:

Multi-ancestry GWAS of severe pregnancy nausea and vomiting identifies risk loci associated with appetite, insulin signaling, and brain plasticity

Marlena Fejzo, Xinran Wang, Qing Tan, Julia Zöllner, Natàlia Pujol-Gualdo, Triin Laisk, Estonian Biobank Research Team, Sarah Finer, David A. van Heel, Genes & Health Research Team, Ben Brumpton, Laxmi Bhatta, Kristian Hveem, Elizabeth A. Jasper, Digna R. Velez Edwards, Jacklyn N. Hellwege, Todd Edwards, Gail P. Jarvik, Yuan Luo, Atlas Khan, Kimber MacGibbon, Yuan Gao, Gaoxiang Ge, Inna Averbukh, Erin Soon, Michael Angelo, Per Magnus, Stefan Johansson, Pål R. Njølstad, Artem Kim, Steven Gazal, Marc Vaudel, Chang Shu, Nicholas Mancuso. Nature Genetics, (in press), 2026.

 

Due to data use agreement, we are able to share only the top 10k association statistics that include 23andMe results. However, we have also uploaded all meta analysis results that exclude the inclusion of 23andMe.
DOI: 10.5061/dryad.4qn4s47
title: Data from: Gene flow mediates the role of sex chromosome meiotic drive during complex speciation

description: During speciation, sex chromosomes often accumulate interspecific genetic
 incompatibilities faster than the rest of the genome. The drive theory
 posits that sex chromosomes are susceptible to recurrent bouts of meiotic
 drive and suppression, causing the evolutionary build-up of divergent
 cryptic sex-linked drive systems and, incidentally, genetic
 incompatibilities. To assess the role of drive during speciation, we
 combine high-resolution genetic mapping of X-linked hybrid male sterility
 with population genomics analyses of divergence and recent gene flow
 between the fruitfly species, Drosophila mauritiana and D. simulans. Our
 findings reveal a high density of genetic incompatibilities and a
 corresponding dearth of gene flow on the X chromosome. Surprisingly, we
 find that a known drive element recently migrated between species and,
 rather than contributing to interspecific divergence, caused a strong
 reduction in local sequence divergence, undermini ng the evolution of
 hybrid sterility. Gene flow can therefore mediate the effects of selfish
 genetic elements during speciation.
description: Fertility of individual
 recombinant malesTab delimited text file.
 ID=recombinant genotype, N=number of offspring, sr=proportion of offspring
 that are femaleSource_3_recomb_fertility.txtRecombinant genotypesTab delimited text file. id=recombinant genotype, id_long=recombinant genotype+barcode, X.3642-X.18795965 (2835 columns)=probability of sim ancestry from HMM (1=sim,0=mau), telomere=ancestry at proximal end of X chromosome, mean.progeny=mean number of offspring, sex.ratio=proportion of offspring that are female, proportion.sterile=proportion of replicate males that sired fewer than five offspringSource_1_recomb_genos.txtQTL input fileComma delimited text file. Input file for r/qtlSource_4_recomb_genos_rqtl.csvSource_5_maupolyComma delimited text file. Output of POPBAM and Gmin scans.Source_6_Gmin_5kb_windowsComma delimited text file. Output of POPBAM and Gmin scans.Output of HMM ancestry analysis590 R data filesArchive.zipFertility of individual sim wXD1 malesTab delimited text file.Source_2_simwXD1_fertility.txtFertility of individual mau w12 malesTab delimited text file.Source_2b_mauw12_fertility.txtImages of HMM ancestry analysispdf images of HMM outputHMMoutput.pdf.zip