cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5373223
title: OpenCitations Corpus dataset of all the identifiers, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about identifiers, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.5281/zenodo.3996952
title: POPC:POPG 4:1 MD simulation with CHARMM36 in water with Na+ counter ions

description: CHARMM36 POPC:POPG 4:1 bilayer simulation in water. The initial structure was taken from CHARMM-GUI. Temperature is 298 K. The system contains 350 POPC, 88 POPG, 88 sodium ions and 26280 TIP3P water molecules. Total length of simulation is 400 ns. First 100 ns were discarded. Saving frequency of 100-300ns.xtc is 20 ps.
DOI: 10.6084/m9.figshare.5373214.v1
title: OpenCitations Corpus provenance data of all the resource embodiments, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about resource embodiments, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373226.v1
title: OpenCitations Corpus provenance data of all the provenance agents, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about provenance agents shared by the whole OCC, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373211
title: OpenCitations Corpus provenance data of all the bibliographic entries, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373217.v1
title: OpenCitations Corpus dataset of all the responsible agents, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about responsible agents, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373220.v1
title: OpenCitations Corpus dataset of all the bibliographic resources, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.5281/zenodo.3996951
title: POPC:POPG 4:1 MD simulation with CHARMM36 in water with Na+ counter ions

description: CHARMM36 POPC:POPG 4:1 bilayer simulation in water. The initial structure was taken from CHARMM-GUI. Temperature is 298 K. The system contains 350 POPC, 88 POPG, 88 sodium ions and 26280 TIP3P water molecules. Total length of simulation is 400 ns. First 100 ns were discarded. Saving frequency of 100-300ns.xtc is 20 ps.
DOI: 10.6084/m9.figshare.5373211.v1
title: OpenCitations Corpus provenance data of all the bibliographic entries, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373223.v1
title: OpenCitations Corpus dataset of all the identifiers, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about identifiers, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373202
title: OpenCitations Corpus dataset of all the bibliographic entries, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373205
title: OpenCitations Corpus provenance data of all the bibliographic resources, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373196
title: Supplementary Material for: Syncytia Induction by Clinical Isolates of Human Respiratory Syncytial Virus A

description: <i>Objective:</i> Syncytia formation is the hallmark of the cytopathic effect caused by human respiratory syncytial virus (HRSV), which is the most important viral respiratory pathogen in children. This article reports methodological improvements in primary HRSV isolation and the importance of syncytia formation and mRNA levels of F protein for the progeny yield, using clinical isolates of HRSV. <i>Methods:</i> The A and B strains of HRSV were isolated in HEp-2 cell cultures from fresh and frozen nasopharyngeal aspirates. The formation of syncytia was evaluated using 2 different assays. Levels of F protein mRNA were quantified by real-time PCR while HRSV progeny titration was done by plaque assay. <i>Results:</i> HRSV was primarily isolated from 238 of 312 (90.7%) samples, and 13 of these (12 HRSV-A and 1 HRSV-B) were continuously passaged in vitro. The quantity and size of syncytia formed by 6 pure HRSV-A clinical isolates were different, as were the levels of F protein mRNA. <i>Conclusion:</i> There is a direct correlation of quantities of syncytia and inoculum size, but not with mRNA levels of HRSV-A F protein. Importantly, levels of F protein mRNA were directly related to progeny production.
DOI: 10.6084/m9.figshare.5373202.v1
title: OpenCitations Corpus dataset of all the bibliographic entries, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373205.v1
title: OpenCitations Corpus provenance data of all the bibliographic resources, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373187
title: Supplementary Material for: Evidence for Concerted and Mosaic Brain Evolution in Dragon Lizards

description: The brain plays a critical role in a wide variety of functions including behaviour, perception, motor control, and homeostatic maintenance. Each function can undergo different selective pressures over the course of evolution, and as selection acts on the outputs of brain function, it necessarily alters the structure of the brain. Two models have been proposed to explain the evolutionary patterns observed in brain morphology. The concerted brain evolution model posits that the brain evolves as a single unit and the evolution of different brain regions are coordinated. The mosaic brain evolution model posits that brain regions evolve independently of each other. It is now understood that both models are responsible for driving changes in brain morphology; however, which factors favour concerted or mosaic brain evolution is unclear. Here, we examined the volumes of the 6 major neural subdivisions across 14 species of the agamid lizard genus <i>Ctenophorus</i> (dragons). These species have diverged multiple times in behaviour, ecology, and body morphology, affording a unique opportunity to test neuroevolutionary models across species. We assigned each species to an ecomorph based on habitat use and refuge type, then used MRI to measure total and regional brain volume. We found evidence for both mosaic and concerted brain evolution in dragons: concerted brain evolution with respect to body size, and mosaic brain evolution with respect to ecomorph. Specifically, all brain subdivisions increase in volume relative to body size, yet the tectum and rhombencephalon also show opposite patterns of evolution with respect to ecomorph. Therefore, we find that both models of evolution are occurring simultaneously in the same structures in dragons, but are only detectable when examining particular drivers of selection. We show that the answer to the question of whether concerted or mosaic brain evolution is detected in a system can depend more on the type of selection measured than on the clade of animals studied.
DOI: 10.6084/m9.figshare.5373193
title: Narrative image annotation model

description: It is a preliminary image annotation ontology which could be used to annotate image with story in it.
DOI: 10.6084/m9.figshare.5373196.v1
title: Supplementary Material for: Syncytia Induction by Clinical Isolates of Human Respiratory Syncytial Virus A

description: <i>Objective:</i> Syncytia formation is the hallmark of the cytopathic effect caused by human respiratory syncytial virus (HRSV), which is the most important viral respiratory pathogen in children. This article reports methodological improvements in primary HRSV isolation and the importance of syncytia formation and mRNA levels of F protein for the progeny yield, using clinical isolates of HRSV. <i>Methods:</i> The A and B strains of HRSV were isolated in HEp-2 cell cultures from fresh and frozen nasopharyngeal aspirates. The formation of syncytia was evaluated using 2 different assays. Levels of F protein mRNA were quantified by real-time PCR while HRSV progeny titration was done by plaque assay. <i>Results:</i> HRSV was primarily isolated from 238 of 312 (90.7%) samples, and 13 of these (12 HRSV-A and 1 HRSV-B) were continuously passaged in vitro. The quantity and size of syncytia formed by 6 pure HRSV-A clinical isolates were different, as were the levels of F protein mRNA. <i>Conclusion:</i> There is a direct correlation of quantities of syncytia and inoculum size, but not with mRNA levels of HRSV-A F protein. Importantly, levels of F protein mRNA were directly related to progeny production.
DOI: 10.6084/m9.figshare.5373181
title: Data for divergance of develpmental trajectories.xlsx

description: Data for "Divergence of developmental trajectories" published in PNAS.<br>
DOI: 10.6084/m9.figshare.5373181.v1
title: Data for divergance of develpmental trajectories.xlsx

description: Data for "Divergence of developmental trajectories" published in PNAS.<br>
DOI: 10.6084/m9.figshare.5373187.v1
title: Supplementary Material for: Evidence for Concerted and Mosaic Brain Evolution in Dragon Lizards

description: The brain plays a critical role in a wide variety of functions including behaviour, perception, motor control, and homeostatic maintenance. Each function can undergo different selective pressures over the course of evolution, and as selection acts on the outputs of brain function, it necessarily alters the structure of the brain. Two models have been proposed to explain the evolutionary patterns observed in brain morphology. The concerted brain evolution model posits that the brain evolves as a single unit and the evolution of different brain regions are coordinated. The mosaic brain evolution model posits that brain regions evolve independently of each other. It is now understood that both models are responsible for driving changes in brain morphology; however, which factors favour concerted or mosaic brain evolution is unclear. Here, we examined the volumes of the 6 major neural subdivisions across 14 species of the agamid lizard genus <i>Ctenophorus</i> (dragons). These species have diverged multiple times in behaviour, ecology, and body morphology, affording a unique opportunity to test neuroevolutionary models across species. We assigned each species to an ecomorph based on habitat use and refuge type, then used MRI to measure total and regional brain volume. We found evidence for both mosaic and concerted brain evolution in dragons: concerted brain evolution with respect to body size, and mosaic brain evolution with respect to ecomorph. Specifically, all brain subdivisions increase in volume relative to body size, yet the tectum and rhombencephalon also show opposite patterns of evolution with respect to ecomorph. Therefore, we find that both models of evolution are occurring simultaneously in the same structures in dragons, but are only detectable when examining particular drivers of selection. We show that the answer to the question of whether concerted or mosaic brain evolution is detected in a system can depend more on the type of selection measured than on the clade of animals studied.
DOI: 10.6084/m9.figshare.5373166
title: Supporting information 7

description: BayesTraits MultiState ML and MCMC ancestral state reconstruction output for colour character 2 on ML phylogram and ultrametric trees. The grey panel lists internal node IDs and subtending terminal taxa. The blue panel are results from ML ancestral state reconstruction. The yellow panel are results from MCMC ancestral state reconstruction. Abbreviations: Ultra 0, ultrametric tree generated with penalty = 0; Ultra 10, ultrametric tree generated with penalty = 10; Ultra 10000, ultrametric tree generated with penalty = 10000.
DOI: 10.6084/m9.figshare.5373169
title: The entire OpenCitations Corpus triplestore data dump, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) triplestore (Blazegraph, https://www.blazegraph.com/, licensed in GPLv2) containing all the data of the corpus, and created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-triplestore<br><br>Please execute "run.sh" for running the triplestore, and use "stop.sh" for stopping it.<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373193.v2
title: Narrative image annotation model

description: It is a preliminary image annotation ontology which could be used to annotate image with story in it.
DOI: 10.6084/m9.figshare.5373163
title: Supporting Online Material - Genetic interactions between the chromosome axis-associated protein Hop1 and homologous recombination determinants in Schizosaccharomyces pombe

description: Raw data and plasmid sequences accompanying Brown SD, Jarosinska OD, Lorenz A (2018) Genetic interactions between the chromosome axis-associated protein Hop1 and homologous recombination determinants in Schizosaccharomyces pombe. - Current Genetics 64 (5): 1089-1104<br>
DOI: 10.6084/m9.figshare.5373169.v1
title: The entire OpenCitations Corpus triplestore data dump, archived on 2017-08-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) triplestore (Blazegraph, https://www.blazegraph.com/, licensed in GPLv2) containing all the data of the corpus, and created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-triplestore<br><br>Please execute "run.sh" for running the triplestore, and use "stop.sh" for stopping it.<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5373166.v2
title: Supporting information 7

description: BayesTraits MultiState ML and MCMC ancestral state reconstruction output for colour character 2 on ML phylogram and ultrametric trees. The grey panel lists internal node IDs and subtending terminal taxa. The blue panel are results from ML ancestral state reconstruction. The yellow panel are results from MCMC ancestral state reconstruction. Abbreviations: Ultra 0, ultrametric tree generated with penalty = 0; Ultra 10, ultrametric tree generated with penalty = 10; Ultra 10000, ultrametric tree generated with penalty = 10000.
DOI: 10.6084/m9.figshare.5373193.v1
title: Narrative image annotation model

description: It is a preliminary image annotation ontology which could be used to annotate image with story in it.
DOI: 10.6084/m9.figshare.5373157
title: Mirror Game - CC Measure

description: Code used in the Mirror Game project to automatically detect Co-Confidence (CC) motion. See details in (Noy, Binun &Golland, 2015).<br>The code is published here in order to describe the exact details of the alogrithm. Some of the functions might need other toolboxes to run. I tried to put all needed functions here, contact me if something is missing.<br>The two main function that compute the CC detection are:MG_Tools_CC_AZCMG_Tools_Segments_Acc_Zero_Cross<br>See inside the code for detailed information<br><br><br><br><br><br><br><br><br>Ref:<br>L. Noy, N. Levit-Binun, and Y. Golland, “Being in the zone: physiological markers of togetherness in joint improvisation”, <b>Frontiers in Human Neuroscience</b>, 9:187, <b>2015</b> <br>
DOI: 10.6084/m9.figshare.5373163.v2
title: Supporting Online Material - Genetic interactions between the chromosome axis-associated protein Hop1 and homologous recombination determinants in Schizosaccharomyces pombe

description: Raw data and plasmid sequences accompanying Brown SD, Jarosinska OD, Lorenz A (2018) Genetic interactions between the chromosome axis-associated protein Hop1 and homologous recombination determinants in Schizosaccharomyces pombe. - Current Genetics 64 (5): 1089-1104<br>