cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5676/eum_saf_cm/clara_avhrr/v003
title: CLARA-A3: CM SAF cLoud, Albedo and surface RAdiation dataset from AVHRR data - Edition 3

description: The CLARA-A3 record provides cloud properties and radiation parameters derived from the AVHRR
 sensor onboard polar orbiting NOAA and METOP satellites. CLARA-A3 is the latest edition of
 CLARA with previous editions documented in Karlsson et al. (2013) and Karlsson et al. (2017).
 CLARA-A3 covers the time period 1979/01/01 until 2020/12/31 as climate data record (CDR), but
 is operationally extended as interim climate data record (ICDR) to the present with a latency
 of 10 days. The AVHRR measurement input to the CLARA-A3 retrieval algorithms is the EUMETSAT
 PyGAC AVHRR Fundamental Data Record (FDR) Release 1 (DOI:10.15770/EUM_SEC_CLM_0060). CLARA-A3
 features a range of cloud products: cloud mask, cloud top temperature/pressure/height, cloud
 thermodynamic phase, and (for liquid and ice clouds separately) cloud optical thickness,
 particle effective radius and cloud water path. Additionally, cloud droplet number
 concentration and cloud geometrical thickness are provided for liquid clouds. Furthermore, a
 range of radiation products are included in CLARA-A3: surface black-sky, white-sky and
 blue-sky albedo; surface downwelling short- and longwave radiation as well as surface net
 radiation; top-of-atmosphere (TOA) upwelling short- and longwave radiation. Cloud products are
 available as monthly and daily averages and histograms, as well as daily resampled global
 products (Level 2b) for individual satellites. Surface albedo is presented as monthly and
 pentad (5 day) averages. Surface and TOA radiation products are provided as daily and monthly
 averages. All averages are available on a 0.25° x 0.25° global grid. Surface albedo and
 selected cloud products are also provided on two equal area grids with a resolution of 25 km x
 25 km covering the polar regions. Daily resampled cloud products (level 2b) are provided in a
 global grid with a resolution of 0.05°x0.05°. CLARA-A3 features a comprehensive set of
 documentation including User Manuals, Validation Reports and Algorithms Theoretical Baseline
 Documents.
DOI: 10.6084/m9.figshare.24849507
title: Supplementary Material for: Evaluation of the First-dose Anti-VEGF Anatomical Response in Polypoidal Choroidal Vasculopathy Patients: Correlation with the Third-dose Response and Risk Factors Analysis

description: Introduction: To investigate whether first-dose efficacy can predict third-dose anatomical response and analyze the risk factors for first-dose response of polypoidal choroidal vasculopathy (PCV) patients.
Methods: We retrospectively reviewed patients’ medical records from 27-centers of China PCV Research Alliance. PCV patients treated with intravitreal injections of Conbercept based on the 3+ pro re nata (PRN) regimen (three initial monthly injections, followed by injections as needed) with complete 3-month injection data were included. Response correlations, risk factor associations, changes in central macular thickness (CMT) or best-corrected visual acuity (BCVA), and number of injections in the first year of follow-up were evaluated separately in the pachy-PCV and non-pachy-PCV phenotypes.
Results: 165 eligible patients were included. There was a significant correlation between first-dose and third-dose anatomical response in pachy-PCV or non-pachy-PCV patients (rs=0.611, p&lt;0.001; rs=0.638, p&lt;0.001). Multivariate analysis revealed associations of good first-dose anatomical response in pachy-PCV patients with baseline CMT with a predicted area under the curve (AUC) of 0.847, while a good response in non-pachy-PCV patients was associated with baseline BCVA, baseline CMT, pigment epithelial detachment (PED) height, higher proportion of intraretinal fluid (IRF), and lower PED minimum diameter with a predicted AUC of 0.940. CMT in the good first-dose response group was significantly decreased from baseline at all first-year follow-up visits in both groups (p&lt;0.001), and mean BCVA was improved in the good vs. poor first-dose anatomical response group (5.4 vs. 1.6 ETDRS letters in pachy-PCV, 10.6 vs. 7.4 letters in non-pachy-PCV) after the third injection. No significant difference was observed in the number of injections in the first year of follow-up between different response groups.
Conclusion: In PCV patients receiving IVC, the first- and third-dose response are significantly correlated, and different factors influence the first-dose response in different subtypes of PCV.
DOI: 10.6084/m9.figshare.26028676
title: Supplementary Material for: A Rare Case of Coronavirus Disease 2019 Encephalitis Mimicking Creutzfeldt–Jacob Disease in an Immunocompromised Patient: A Case Report

description: COVID Encephalitis Mimicking Creutzfeldt-Jacob Disease
Naveenkumar Nallathambi, Junior resident, Institute of Internal Medicine, Madras Medical College, India 

Introduction: Coronavirus disease 2019 (COVID-19) encephalitis is characterized by viral entry into the brain, resulting in inflammation and a cascade of neuronal damage. Clinical manifestations include headaches, seizures, and movement disorders. A mortality rate of 20% and infrequent presentation make COVID-19 encephalitis a diagnostic challenge.

Case Presentation: We hereby present the case of a 55-year-old man with a history of diabetes mellitus presenting with altered sensorium, swelling in the left eye and involuntary jerky limb movements. Neurological examination revealed neck rigidity, myoclonic jerks, and an extensor plantar response. Brain magnetic resonance imaging (MRI) was performed, which revealed cortical enhancement in the bifrontal, temporal, and occipital lobes. Rapid progression of myoclonus, altered sensorium, and cortical enhancement on MRI suggested Creutzfeldt–Jacob Disease. After a thorough workup, the diagnosis was COVID-19 encephalitis with rhino-orbital mucormycosis. The treatment regimen consisted of adequate glycemic control, remdesivir injection, intravenous and retroorbital liposomal amphotericin, and levetiracetam. The patient’s condition improved and he was eventually discharged.

Conclusion: This case illustrates the uncommon presentation of COVID-19 with neurological involvement and emphasizes the value of history-taking, neuroimaging, and CSF analysis. A high index of suspicion is critical for a prompt diagnosis and initiating therapy.
DOI: 10.6084/m9.figshare.27310665
title: Source Data and Dataset for the Digital Brain Project

description: Source Data and dataset for the Digital Brain Project: Source data for Figure 2 (Source_Data_Figure_2.zip), Extended Data Figure 1 (Source_Data_Extended_Data_Figure_1.zip), Extended Data Figure 2 (Source_Data_Extended_Data_Figure_2.zip)), and Extended Data Table1, and the dataset for the construction of Digital Brain (Source_Data_Extended_Table_1_and_Dataset_for_DB.zip). Please note that this dataset for Digital Brain is exactly the source data for Extended Data Table 1.
DOI: 10.6084/m9.figshare.27890139
title: Supplementary Material for: Metastatic Colonic Adenocarcinoma Mimicking Acute Bowel Perforation: Hiccups and Vomiting as Unusual Initial Symptoms: A Case Report

description: Colonic adenocarcinoma commonly presents with altered bowel habits, abdominal pain, and weight loss. Intestinal perforations, a severe complication of colorectal cancer, have high mortality rates. This case report describes a 50-year-old man with rectosigmoid adenocarcinoma treated with chemo-radiotherapy who presented with intractable hiccups, watery diarrhea, and non-projectile vomiting. Initial imaging revealed a large intestinal perforation, ischemic colitis, and a stenosing rectosigmoid tumor. Due to the complex nature of his condition, a total colectomy with end ileostomy was performed. This case underscores the need for early recognition of atypical presentations of metastatic colonic adenocarcinoma and highlights the importance of a thorough diagnostic approach for timely management.
DOI: 10.7289/v5x34vdr
title: Global Historical Climatology Network - Monthly (GHCN-M), Version 3

description: **Please note, GHCN-Monthly provides climatological observations for four elements; monthly mean maximum temperature, minimum temperature, mean temperature, and monthly total precipitation. Precipitation are available in version 2, monthly mean maximum and minimum temperature in version 3, and monthly mean temperature is also now available in the Version 4 BETA release. Users of monthly mean temperature should use the most recently available fully operational version except in some cases (e.g., when reproducing previous studies that used a previous version).** Since the early 1990s the Global Historical Climatology Network-Monthly (GHCN-M) dataset has been an internationally recognized source of data for the study of observed variability and change in land surface air temperature. It provides monthly mean temperature data for 7280 stations from 226 countries and territories, ongoing monthly updates of more than 2000 stations to support monitoring of current and evolving climate conditions, and homogeneity adjustments to remove non-climatic influences that can bias the observed temperature record. The release of version 3 monthly mean temperature data in 2011 introduced a number of improvements and changes from the previous release that included consolidating "duplicate" series, updating records from recent decades, and the use of new approaches to homogenization and quality assurance.
DOI: 10.14768/apd.0ct0-b036
title: African Pollen Database: Uganda_Laseski_1983_trans fossil pollen dataset
DOI: 10.14768/apd.820v-hm58
title: African Pollen Database: Kenya_Laseski_1983_trans fossil pollen dataset
DOI: 10.14768/apd.f905-xe76
title: African Pollen Database: Gabon_Jolly_1996_trans fossil pollen dataset
DOI: 10.14768/apd.q341-6v64
title: African Pollen Database: Gabon_Lebamba_2009S_trans fossil pollen dataset
DOI: 10.14768/apd.x772-ae71
title: African Pollen Database: Cameroon_Bengo_1992_trans fossil pollen dataset
DOI: 10.14768/apd.zhab-s798
title: African Pollen Database: Chad_Amaral_Surface_2013_trans fossil pollen dataset
DOI: 10.15468/35rwhv
title: Twelve local floras of European Russia

description: Twelve local floras of European Russia studied and documented in 2001-2019 by Alexey P. Seregin: Ustya (Arkhangelsk Oblast), Zaseki (Tula Oblast), Polibino (Lipetsk Oblast), Khrenovoye (Voronezh Oblast), Troyeruchitsa (Tver Oblast), Man-Pupu-Ner (Komi Republic), Middle Lyaga (Komi Republic), Utrish (Krasnodar Krai), Yasnaya Polyana (Tula Oblast), Bogolyubovsky Lug (Vladimir Oblast), Tsaritsyno (City of Moscow), Patakino (Vladimir Oblast).
DOI: 10.15468/jb84wg
title: Locations of plants on dot distribution maps in the Flora of Siberia (Flora Sibiraea, 1987–1997)

description: In 1987-1997 the 13 volumed collective monograph Flora of Siberia was published where data on systematics, ecology and distribution of 4302 native and naturalised alien vascular plant species and subspecies were presented (Flora Sibiraea, 1987–1997). Dot distribution maps for 2569 of them were made by authors of the monograph on the base of specimens stored in herbaria of Novosibirsk (NS, NSK), Tomsk (TK), Moskow (MW, MHA) and Saint Petersburg (LE). The total number of locations on the maps are 169854. The resource contains coordinates of the locations which were geocoded by means of the standard ArcView GIS procedures.
DOI: 10.17188/1189406
title: Materials Data on WC by Materials Project

description: WC1 is Halite, Rock Salt structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. W4+ is bonded to six equivalent C4- atoms to form a mixture of edge and corner-sharing WC6 octahedra. The corner-sharing octahedral tilt angles are 0°. All W–C bond lengths are 2.19 Å. C4- is bonded to six equivalent W4+ atoms to form a mixture of edge and corner-sharing CW6 octahedra. The corner-sharing octahedral tilt angles are 0°.
DOI: 10.17188/1193675
title: Materials Data on WC by Materials Project

description: WC1 is Tungsten Carbide structured and crystallizes in the hexagonal P-6m2 space group. The structure is three-dimensional. W4+ is bonded to six equivalent C4- atoms to form a mixture of distorted corner, edge, and face-sharing WC6 pentagonal pyramids. All W–C bond lengths are 2.21 Å. C4- is bonded to six equivalent W4+ atoms to form a mixture of distorted corner, edge, and face-sharing CW6 pentagonal pyramids.
DOI: 10.17188/1274131
title: Materials Data on MoC by Materials Project

description: MoC is Molybdenum Carbide MAX Phase-like structured and crystallizes in the hexagonal P6_3/mmc space group. The structure is three-dimensional. Mo4+ is bonded to six C4- atoms to form a mixture of edge, face, and corner-sharing MoC6 octahedra. The corner-sharing octahedra tilt angles range from 0–46°. There are three shorter (2.18 Å) and three longer (2.23 Å) Mo–C bond lengths. There are two inequivalent C4- sites. In the first C4- site, C4- is bonded to six equivalent Mo4+ atoms to form a mixture of edge and corner-sharing CMo6 octahedra. In the second C4- site, C4- is bonded to six equivalent Mo4+ atoms to form a mixture of distorted edge and corner-sharing CMo6 pentagonal pyramids. The corner-sharing octahedral tilt angles are 2°.
DOI: 10.17188/1325085
title: Materials Data on W2C by Materials Project

description: W2C is trigonal omega structured and crystallizes in the trigonal P-3m1 space group. The structure is two-dimensional and consists of one W2C sheet oriented in the (0, 0, 1) direction. W2+ is bonded in a distorted T-shaped geometry to three equivalent C4- atoms. All W–C bond lengths are 2.13 Å. C4- is bonded to six equivalent W2+ atoms to form edge-sharing CW6 octahedra.
DOI: 10.24381/cds.a6d42d60
title: Global sea level change time series from 1950 to 2050 derived from reanalysis and high resolution CMIP6 climate projections
DOI: 10.5281/zenodo.12626220
title: Raw NanoSIMS data - DC06-05-94, DC06-07-18, DC06-04-43, DC16-14-309
DOI: 10.5281/zenodo.14005015
title: PlasGO_dataset

description: Plasmid, as a mobile genetic element, plays a pivotal role in facilitating the transfer of traits, such as antimicrobial resistance, among the bacterial community. Annotating plasmid-encoded proteins with the widely used Gene Ontology (GO) vocabulary is a fundamental step in various tasks, including plasmid mobility classification. However, GO prediction for plasmid-encoded proteins faces two major challenges: the high diversity of functions and the limited availability of high-quality GO annotations. Thus, we introduce PlasGO, a tool that leverages a hierarchical architecture to predict GO terms for plasmid proteins. PlasGO utilizes a powerful protein language model to learn the local context within protein sentences and a BERT model to capture the global context within plasmid sentences. Additionally, PlasGO allows users to control the precision by incorporating a self-attention confidence weighting mechanism. We rigorously evaluated PlasGO and benchmarked it against six state-of-the-art tools in a series of experiments. The experimental results collectively demonstrate that PlasGO has achieved commendable performance. PlasGO significantly expanded the annotations of the plasmid-encoded protein database by assigning high-confidence GO terms to over 95% of previously unannotated proteins, showcasing impressive precision of 0.8229, 0.7941, and 0.8870 for the three GO categories, respectively, as measured on the novel protein test set. The PlasGO software implemented in Python, the curated RefSeq plasmid protein dataset used to train the PlasGO models and benchmark, and the pre-annotated high-confidence GO database generated by PlasGO are publicly available in this project.
DOI: 10.5281/zenodo.8071014
title: Fore wings of honey bees (Apis mellifera) from Jammu and Kashmir, India

description: The dataset consists of 350 honey bee (Apis mellifera) fore wing images, which represent 175 workers and 10 locations in Jammu and Kashmir, India. The wing images are compressed in IN-wing-images.zip. Raw coordinates of 19 landmarks marked on the wings are in file IN-raw-coordinates.csv. Additional data, including geographic coordinates and resolution, is saved in the file IN-data.csv.
DOI: 10.6084/m9.figshare.27019894
title: AqUavplant Dataset: A High-Resolution Aquatic Plant Classification and Segmentation Image Dataset Using UAV

description: In this AqUavplant dataset, we aim to contribute to the aquatic plant mapping benchmarking datasets for agriculture–computer vision researchers. We captured RGB images using a UAV at low altitudes to acquire higher details of small-sized freshwater aquatic plants in Bangladesh. A realistic demographic and geographic variation is added by collecting images of 31 types of invasive and indigenous aquatic species from nine sites in three locations. There are 197 high-resolution images each containing a lofty number of species. The AqUavplant dataset comprising binary and multiclass semantic segmentation annotations, can enhance data-driven models for automatic aquatic plant mapping. Eventually, the reliable baselines mentioned in the manuscript will aid researchers in leveraging the dataset for improved prediction, monitoring, and obtaining demographic data, thereby advancing common and rare aquatic plant mapping.
DOI: 10.6084/m9.figshare.27857658.v1
title: <b>Pharyngeal neuronal mechanisms governing sour taste perception in </b><b><i>Drosophila melanogaster</i></b>

description: Sour taste, which is elicited by low pH, may serve to help animals distinguish appetitive from potentially harmful food sources. In all species studied to date, the attractiveness of oral acids is contingent on concentration. Many carboxylic acids are attractive at ecologically relevant concentrations but become aversive beyond some maximal concentration. Recent work found that <i>Drosophila</i> ionotropic receptors IR25a and IR76b expressed by sweet-responsive gustatory receptor neurons (GRNs) in the labellum, a peripheral gustatory organ, mediate appetitive feeding behaviors toward dilute carboxylic acids. Here, we disclose the existence of pharyngeal sensors in <i>D. </i><i>melanogaster</i><i> </i>that detect ingested carboxylic acids and are also involved in the appetitive responses to carboxylic acids. These pharyngeal sensors rely on IR51b, IR94a, and IR94h, together with IR25a and IR76b, to drive responses to carboxylic acids. We then demonstrate that optogenetic activation of either <i>Ir94a</i><sup>+</sup> or <i>Ir94h</i><sup>+</sup> GRNs promotes an appetitive feeding response, confirming their contributions to appetitive feeding behavior. Our discovery of internal pharyngeal sour taste receptors opens up new avenues for investigating the internal sensation of tastants in insects.
DOI: 10.6084/m9.figshare.28060451
title: Supplementary Material for: Female Representation in Ophthalmic Oncology and Pathology: An Analysis of Scholarship and Leadership

description: Introduction: Female representation in ophthalmic oncology and pathology is unknown. We evaluated gender-based trends in authorship and leadership in these fields, focusing on intraocular tumors.

Methods: Articles containing "uveal melanoma" (UM) "retinoblastoma" (Rb), “primary intraocular lymphoma" (PIOL), “choroidal metastasis” (CM), and articles in Ocular Oncology and Pathology (OOP) were searched on PubMed and author names obtained. Leadership/awards from 4 international ophthalmic oncology and pathology societies were recorded. GenderAPI was used to predict gender.

Results: Among 4245 UM, 9660 Rb, 141 PIOL, 353 CM, and 568 OOP authors, more males were first (range, 52-67%) and last authors (range, 69-76%). Analysis of the 4 keywords showed overall female authorship increased from 2011-2016 to 2017-2022 (35% to 40%, p&lt;0.001), with an increase in both first (45% to 47%, p=0.03) and last authorship (26% to 33%, p&lt;0.001). Female first authors were more likely to publish with female last authors (Rb OR 1.72, p&lt;0.001; OOP OR 2.04, p=0.01). Males held more leadership roles/awards in societies.

Conclusion: Female representation in ophthalmic oncology and pathology has grown but gender disparities remain. Female first authors were more likely to publish with female last authors. Most society leaders and awardees were male. Cultivating mentorship through professional organizations may help achieve gender parity.
DOI: 10.6084/m9.figshare.28068359
title: Supplementary Material for: Association between metabolic disorders and impaired kidney function thereafter in the Japanese general population

description: Introduction: Metabolic syndrome (MetS) and chronic kidney disease are both important risk factors for cardiovascular disease and are closely related to each other. We retrospectively investigated whether MetS or its components increase the risk of development of impaired kidney function in the Japanese general population. 
Methods: This is a retrospective cohort study　which enrolled 14917 participants who visited our hospital for physical checkups from 2008 to 2018 and had normal estimated glomerular filtration rate (eGFR≥60 mL/min/1.73 m2) during the baseline examination. Participants were followed up for the median of 1847 days until 2019 with the development of impaired kidney function (eGFR&lt;60 mL/min/1.73 m2) as the endpoint. The definition of MetS was based on Japanese diagnostic criteria (2005).
Results: Throughout the study, 2150 participants (25.9 per 1000 person-year) developed impaired kidney function after their baseline checkup. The incidence of impaired kidney function was more frequent in participants with MetS (39.3 per 1000 person-year) than without (24.2 per 1000 person-year, p&lt;0.001). Moreover, each metabolic syndrome component was positively associated with the incidence of impaired kidney function, where the incidence of impaired kidney function increased with the number of MetS components at baseline (0, 1, 2 and ≥3 component(s); 17.3, 26.9, 32.9 and 39.7 per 1000 person-year, respectively). Multivariate Cox hazard analysis revealed that MetS was an independent risk factor for impaired kidney function after adjusting for known risk factors (hazard ratio, 1.29; 95% confidence interval, 1.15–1.45). 
Conclusions: Testing for MetS and its components can help evaluate the risk of developing impaired kidney function in the general population.
DOI: 10.6084/m9.figshare.3635808.v2
title: Authors from the periphery countries choose open access more often (preprint)

description: This is a preprint. The final, published version of this article is here: http://onlinelibrary.wiley.com/doi/10.1002/leap.1093/full<br><br>In this article I analyse attitudes of academic authors toward open access and frequency of choosing open access publication venues by them. I characterize differences between authors based in the periphery countries and the core countries, with regard to choosing so called gold open access as a way of publishing academic articles. The data were obtained with an on-line survey. Emails containing links to the survey were sent to 107,296 scholars listed on the mailing lists belonging to De Gruyter Open, from December 2015 to January 2016. 1012 responses were received. Authors from the periphery countries publish their articles in gold open access more often. They also pay open access publication fees equally often as those based in the core countries. The reasons for that are complex, involving both their preference to publish in open access and the composition of publishing market in the periphery. <br>