cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6673604
title: Topological Network of the Dutch Fairway Information System

description: Topological fairway network derived from the Dutch Fairway Information System. The data is processed to be topological connected and usable for transport network analysis.  


Files


network_digital_twin_v0.3.json This is the json (for web) file for the Rhine corridor extending from Rotterdam (NLD) to Basel (Switzerland).


network_digital_twin_v0.3.pickle This is the pickled (for performance) file for the Rhine corridor extending from Rotterdam (NLD) to Basel (Switzerland).


network_digital_twin_v0.3.zip This is the shapefile (for gis) file for the Rhine corridor extending from Rotterdam (NLD) to Basel (Switzerland).


Methodological information


For details about the creation of the network see Build_FIS_network.ipynb.


Updates in version 0.3.0:


- Added information on discharge dependent velocities and waterlevels in river_waterlevel.geojson and river_velocity.geojson


- Moved information on bathymetry to separate fileedges_0.3_with_bathy.geojson


- More structures added (fix in source dataset)


- Edge and node id's are now always strings


- Removed yaml file. It was not efficient enough and reading functionality is removed from networkx


 


Updates in version 0.2.0:


- added bathymetry info: mean, standard deviation , percentiles [0 (min), 5,  10, 50 (median),  90, 95, 100 (max)]


- added new output formats: added shapely compatible geometry type


Source data for the network is available at https://www.vaarweginformatie.nl/.


Sharing and Access information


CC BY-SA 4.0 license applies: https://creativecommons.org/licenses/by-sa/4.0/.
DOI: 10.6084/m9.figshare.15567763
title: Additional file 1 of Time series analysis of hemorrhagic fever with renal syndrome in mainland China by using an XGBoost forecasting model

description: Additional file 1. Monthly cases of hemorrhagic fever with renal syndrome in Mainland China from 2004 to 2018.
DOI: 10.6084/m9.figshare.12422567.v1
title: Additional file 2 of Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice

description: Additional file 2 Table S1a. Field performance of neo-tetraploid rice lines in 2017 late season (2017-LS) and 2018 early season (2018-ES). Table S1b. Average field performance of autotetraploid rice lines in 2017 late season and 2018 early season. Table S1c. Heterosis performance between neo-tetraploid and autotetraploid rice lines. Table S1d. List of the autotetraploid and neo-tetraploid rice materials used in this study. Table S2. Quality evaluation of genome sequencing data. Table S3. Mapping quality of sequencing reads to MSU7 reference genome. Table S4. Number of genomic variations against MSU7 reference genome. Table S5. Variation validation using previously sequenced individuals. Table S6. Validation of variations using Sanger sequencing. Table S7. Non-parental chromosome blocks that shared by 13 neo-tetraploid rice lines. Table S8. GO enrichment analysis of 222 non-parental genes in neo-tetraploid rice. Table S9. Reported QTLs that co-localized with non-parental variations in neo-tetraploid rice. Table S10. Non-parental genes that expressed in reproductive tissues using RiceXPro database. Table S11. Non-parental genes that expressed in reproductive tissues using RNA-Seq data of neo-tetraploid rice Huaduo1. Table S12. Non-parental genes that expressed in reproductive tissues in both RiceXPro and RNA-Seq data. Table S13. Gene annotation and primer sequences for CRISPR/Cas9 vector construction. Table S14. Genotype of CRISPR/Cas9 knockout lines of nine non-parental genes. Table S15. Pollen fertility and main agronomic traits of CRISPR/Cas9 knockout mutants. Table S16. Version, function and parameters of main software that used for genome re-sequencing and RNA-Seq data analysis.
DOI: 10.6084/m9.figshare.12422627
title: Additional file 3 of Association of polybrominated diphenyl ether (PBDE) levels with biomarkers of placental development and disease during mid-gestation

description: Additional file 3.
DOI: 10.6084/m9.figshare.20286832
title: Characteristics prior to and at time of diagnosis in pediatric bipolar disorder

description: Describe symptoms before and at time of register-diagnosis in children and adolescents. A random sample was selected for chart-review from a Danish nationwide cohort of patients &lt;18 years registered with an incident ICD-10 register-diagnosis of single hypomanic/manic episode or bipolar disorder between 1995 and 2014. Patients with symptoms which adequately documented a BD diagnosis in the chart were included for analysis. 521 were diagnosed in the study period. A random sample of 25% were selected, and 106 charts were possible to retrieve, with 48 chart reviews resulting in confirmation of diagnosis. Time from first reported affective symptoms to diagnosis was 2.6 ± 2.7 years for depressive symptoms, 2.5 ± 2.9 years for mixed symptoms, 1.4 ± 1.6 years for hypomanic symptoms, and 0.4 ± 0.5 years for manic symptoms. A hierarchical clustering analysis revealed three patient-profiles: primarily hypomanic/manic, primarily depressive, and more rare, primarily mixed profile. Frequently reported symptoms prior to diagnosis include anhedonia (79%), irritability (71%), hyperactivity (62.5%), decreased energy (62.5%), and psychotic symptoms (52%). Symptoms of ADHD (19%), comorbid ADHD (15%), symptoms of anxiety (52%), comorbid anxiety (4%), suicidal thoughts (50%), suicide attempts (8%), cutting (23%), substance misuse (21%), and criminal activity (10%) were reported before incident BD diagnosis. The observed patient-profiles leading to diagnosis were primarily manic or depressive, resembling presentations in adults. The presence of ADHD, anxiety, suicide attempts, cutting, and criminal activity prior to diagnosis emphasizes the need for treatment of children and adolescents with affective symptoms. The gap from appearance of the symptoms to diagnosis suggests a window for earlier treatment.
DOI: 10.6084/m9.figshare.20286832.v2
title: Characteristics prior to and at time of diagnosis in pediatric bipolar disorder

description: Describe symptoms before and at time of register-diagnosis in children and adolescents. A random sample was selected for chart-review from a Danish nationwide cohort of patients &lt;18 years registered with an incident ICD-10 register-diagnosis of single hypomanic/manic episode or bipolar disorder between 1995 and 2014. Patients with symptoms which adequately documented a BD diagnosis in the chart were included for analysis. 521 were diagnosed in the study period. A random sample of 25% were selected, and 106 charts were possible to retrieve, with 48 chart reviews resulting in confirmation of diagnosis. Time from first reported affective symptoms to diagnosis was 2.6 ± 2.7 years for depressive symptoms, 2.5 ± 2.9 years for mixed symptoms, 1.4 ± 1.6 years for hypomanic symptoms, and 0.4 ± 0.5 years for manic symptoms. A hierarchical clustering analysis revealed three patient-profiles: primarily hypomanic/manic, primarily depressive, and more rare, primarily mixed profile. Frequently reported symptoms prior to diagnosis include anhedonia (79%), irritability (71%), hyperactivity (62.5%), decreased energy (62.5%), and psychotic symptoms (52%). Symptoms of ADHD (19%), comorbid ADHD (15%), symptoms of anxiety (52%), comorbid anxiety (4%), suicidal thoughts (50%), suicide attempts (8%), cutting (23%), substance misuse (21%), and criminal activity (10%) were reported before incident BD diagnosis. The observed patient-profiles leading to diagnosis were primarily manic or depressive, resembling presentations in adults. The presence of ADHD, anxiety, suicide attempts, cutting, and criminal activity prior to diagnosis emphasizes the need for treatment of children and adolescents with affective symptoms. The gap from appearance of the symptoms to diagnosis suggests a window for earlier treatment.
DOI: 10.6084/m9.figshare.12422627.v1
title: Additional file 3 of Association of polybrominated diphenyl ether (PBDE) levels with biomarkers of placental development and disease during mid-gestation

description: Additional file 3.
DOI: 10.17028/rd.lboro.21859746
title: Supplementary information files for Designing high interfacial conduction beyond bulk via engineering the semiconductor−ionic heterostructure CeO2−δ/BaZr0.8Y0.2O3 for superior proton conductive fuel cell and water electrolysis applications

description: Supplementary information files for Designing high interfacial conduction beyond bulk via engineering the semiconductor−ionic heterostructure CeO2−δ/BaZr0.8Y0.2O3 for superior proton conductive fuel cell and water electrolysis applications
<br>
Proton ceramic fuel cells (PCFCs) are an emerging clean energy technology; however, a key challenge persists in improving the electrolyte proton conductivity, e.g., around 10–3–10–2 S cm–1 at 600 °C for the well-known BaZr0.8Y0.2O3 (BZY), that is far below the required 0.1 S cm–1. Herein, we report an approach for tuning BZY from low bulk to high interfacial conduction by introducing a semiconductor CeO2−δ forming a semiconductor–ionic heterostructure CeO2−δ/BZY. The interfacial conduction was identified by a significantly higher conductivity obtained from the BZY grain boundary than that of the bulk and a further improvement from the CeO2−δ/BZY which achieved a remarkably high proton conductivity of 0.23 S cm–1. This enabled a high peak power of 845 mW cm–2 at 520 °C from a PCFC using the CeO2−δ/BZY as the electrolyte, in strong contrast to the BZY bulk conduction electrolyte with only 229 mW cm–2. Furthermore, the CeO2−δ/BZY fuel cell was operated under water electrolysis mode, exhibiting a very high current density output of 3.2 A cm–2 corresponding to a high H2 production rate, under 2.0 V at 520 °C. The band structure and a built-in-field-assisted proton transport mechanism have been proposed and explained. This work demonstrates an efficient way of tuning the electrolyte from low bulk to high interfacial proton conduction to attain sufficient conductivity required for PCFCs, electrolyzers, and other advanced electrochemical energy technologies.
DOI: 10.17028/rd.lboro.21859746.v1
title: Supplementary information files for Designing high interfacial conduction beyond bulk via engineering the semiconductor−ionic heterostructure CeO2−δ/BaZr0.8Y0.2O3 for superior proton conductive fuel cell and water electrolysis applications

description: Supplementary information files for Designing high interfacial conduction beyond bulk via engineering the semiconductor−ionic heterostructure CeO2−δ/BaZr0.8Y0.2O3 for superior proton conductive fuel cell and water electrolysis applications
<br>
Proton ceramic fuel cells (PCFCs) are an emerging clean energy technology; however, a key challenge persists in improving the electrolyte proton conductivity, e.g., around 10–3–10–2 S cm–1 at 600 °C for the well-known BaZr0.8Y0.2O3 (BZY), that is far below the required 0.1 S cm–1. Herein, we report an approach for tuning BZY from low bulk to high interfacial conduction by introducing a semiconductor CeO2−δ forming a semiconductor–ionic heterostructure CeO2−δ/BZY. The interfacial conduction was identified by a significantly higher conductivity obtained from the BZY grain boundary than that of the bulk and a further improvement from the CeO2−δ/BZY which achieved a remarkably high proton conductivity of 0.23 S cm–1. This enabled a high peak power of 845 mW cm–2 at 520 °C from a PCFC using the CeO2−δ/BZY as the electrolyte, in strong contrast to the BZY bulk conduction electrolyte with only 229 mW cm–2. Furthermore, the CeO2−δ/BZY fuel cell was operated under water electrolysis mode, exhibiting a very high current density output of 3.2 A cm–2 corresponding to a high H2 production rate, under 2.0 V at 520 °C. The band structure and a built-in-field-assisted proton transport mechanism have been proposed and explained. This work demonstrates an efficient way of tuning the electrolyte from low bulk to high interfacial proton conduction to attain sufficient conductivity required for PCFCs, electrolyzers, and other advanced electrochemical energy technologies.
DOI: 10.6084/m9.figshare.17141302
title: Additional file 1 of Comparative transcriptome analysis reveals compatible and recalcitrant genotypic response of barley microspore-derived embryogenic callus toward Agrobacterium infection

description: Additional file 1: Supplementary Table 1. Infection efficiency in three barley genotypes. Supplementary Table 2. An overview of sequencing and assembly of three barley MDEC. Supplementary Table 3. Validation of the transcriptome data by qRT-PCR. Supplementary Table 4. Primer information for qRT-PCR. Supplementary Data 1. Data of significant enriched Biological Process of GO categories in three barley MDEC. Supplementary Data 2. Data of significant enriched Biological Process of GO categories across time-course comparisons in three barley MDEC. The categories are separated as upregulate and downregulate groups. Supplementary Data 3. Data of pathways by KEGG enrichment in three barley MDEC at 2, 6, 12 and 24 hpi. The pathways are separated as upregulate and downregulate groups.
DOI: 10.6084/m9.figshare.17141302.v1
title: Additional file 1 of Comparative transcriptome analysis reveals compatible and recalcitrant genotypic response of barley microspore-derived embryogenic callus toward Agrobacterium infection

description: Additional file 1: Supplementary Table 1. Infection efficiency in three barley genotypes. Supplementary Table 2. An overview of sequencing and assembly of three barley MDEC. Supplementary Table 3. Validation of the transcriptome data by qRT-PCR. Supplementary Table 4. Primer information for qRT-PCR. Supplementary Data 1. Data of significant enriched Biological Process of GO categories in three barley MDEC. Supplementary Data 2. Data of significant enriched Biological Process of GO categories across time-course comparisons in three barley MDEC. The categories are separated as upregulate and downregulate groups. Supplementary Data 3. Data of pathways by KEGG enrichment in three barley MDEC at 2, 6, 12 and 24 hpi. The pathways are separated as upregulate and downregulate groups.
DOI: 10.6084/m9.figshare.12422567
title: Additional file 2 of Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice

description: Additional file 2 Table S1a. Field performance of neo-tetraploid rice lines in 2017 late season (2017-LS) and 2018 early season (2018-ES). Table S1b. Average field performance of autotetraploid rice lines in 2017 late season and 2018 early season. Table S1c. Heterosis performance between neo-tetraploid and autotetraploid rice lines. Table S1d. List of the autotetraploid and neo-tetraploid rice materials used in this study. Table S2. Quality evaluation of genome sequencing data. Table S3. Mapping quality of sequencing reads to MSU7 reference genome. Table S4. Number of genomic variations against MSU7 reference genome. Table S5. Variation validation using previously sequenced individuals. Table S6. Validation of variations using Sanger sequencing. Table S7. Non-parental chromosome blocks that shared by 13 neo-tetraploid rice lines. Table S8. GO enrichment analysis of 222 non-parental genes in neo-tetraploid rice. Table S9. Reported QTLs that co-localized with non-parental variations in neo-tetraploid rice. Table S10. Non-parental genes that expressed in reproductive tissues using RiceXPro database. Table S11. Non-parental genes that expressed in reproductive tissues using RNA-Seq data of neo-tetraploid rice Huaduo1. Table S12. Non-parental genes that expressed in reproductive tissues in both RiceXPro and RNA-Seq data. Table S13. Gene annotation and primer sequences for CRISPR/Cas9 vector construction. Table S14. Genotype of CRISPR/Cas9 knockout lines of nine non-parental genes. Table S15. Pollen fertility and main agronomic traits of CRISPR/Cas9 knockout mutants. Table S16. Version, function and parameters of main software that used for genome re-sequencing and RNA-Seq data analysis.
DOI: 10.6084/m9.figshare.20286838
title: Tribological CCF-PEEK transfer film growth on cutting tool coating

description: To show transfer film growth of continuous carbon fibre reinforced thermoplastic poly-ether-ether-ketone (CCF-PEEK) on cutting tool coating, dry-sliding tribological behaviours of single-layer diamond-like carbon (DLC), titanium nitride (TiN), titanium aluminium nitride (TiAlN) and diamond deposited on cobalt-based cemented carbide (WC-Co) against CCF-PEEK were studied at atmospheric room temperature, respectively. CCF-PEEK showed little affinity to DLC, but continuous CCF-PEEK transfer films with micron-level thickness grew on TiN, TiAlN and diamond, and raising load facilitated the growth. Deposition of DLC significantly lowered the friction of WC-Co whereas TiN, TiAlN and diamond exhibited higher friction than WC-Co. Much larger amounts of CCF-PEEK wear debris were produced on diamond than on TiAlN, TiN and DLC. Formation mechanisms of CCF-PEEK transfer films and the effect on friction are discussed. This study suggests that DLC can be used as countermate surfaces of CCF-PEEK composite with low friction and little CCF-PEEK wear debris.
DOI: 10.6084/m9.figshare.20286838.v1
title: Tribological CCF-PEEK transfer film growth on cutting tool coating

description: To show transfer film growth of continuous carbon fibre reinforced thermoplastic poly-ether-ether-ketone (CCF-PEEK) on cutting tool coating, dry-sliding tribological behaviours of single-layer diamond-like carbon (DLC), titanium nitride (TiN), titanium aluminium nitride (TiAlN) and diamond deposited on cobalt-based cemented carbide (WC-Co) against CCF-PEEK were studied at atmospheric room temperature, respectively. CCF-PEEK showed little affinity to DLC, but continuous CCF-PEEK transfer films with micron-level thickness grew on TiN, TiAlN and diamond, and raising load facilitated the growth. Deposition of DLC significantly lowered the friction of WC-Co whereas TiN, TiAlN and diamond exhibited higher friction than WC-Co. Much larger amounts of CCF-PEEK wear debris were produced on diamond than on TiAlN, TiN and DLC. Formation mechanisms of CCF-PEEK transfer films and the effect on friction are discussed. This study suggests that DLC can be used as countermate surfaces of CCF-PEEK composite with low friction and little CCF-PEEK wear debris.
DOI: 10.6084/m9.figshare.4558456
title: miR-148a and miR-17–5p synergistically regulate milk TAG synthesis via <i>PPARGC1A</i> and <i>PPARA</i> in goat mammary epithelial cells

description: MicroRNA (miRNA) are a class of ‘18–25’ nt RNA molecules which regulate gene expression and play an important role in several biologic processes including fatty acid metabolism. Here we used S-Poly (T) and high-throughput sequencing to evaluate the expression of miRNA and mRNA during early-lactation and in the non-lactating (“dry”) period in goat mammary gland tissue. Results indicated that miR-148a, miR-17–5p, <i>PPARGC1A</i> and <i>PPARA</i> are highly expressed in the goat mammary gland in early-lactation and non-lactating periods. Utilizing a Luciferase reporter assay and Western Blot, <i>PPARA</i>, an important regulator of fatty acid oxidation, and <i>PGC1a (PPARGC1A)</i>, a major regulator of fat metabolism, were demonstrated to be targets of miR-148a and miR-17–5p in goat mammary epithelial cells (GMECs). It was also revealed that miR-148a expression can regulate <i>PPARA</i>, and miR-17–5p represses <i>PPARGC1A</i> in GMECs. Furthermore, the overexpression of miR-148a and miR-17–5p promoted triacylglycerol (TAG) synthesis while the knockdown of miR-148a and miR-17–5p impaired TAG synthesis in GMEC. These findings underscore the importance of miR-148a and miR-17–5p as key components in the regulation of TAG synthesis. In addition, miR-148a cooperates with miR-17–5p to regulate fatty acid metabolism by repressing <i>PPARGC1A</i> and <i>PPARA</i> in GMECs. Further studies on the functional role of miRNAs in lipid metabolism of ruminant mammary cells seem warranted.
DOI: 10.6084/m9.figshare.10326461
title: MOESM1 of Root phenotypic detection of different vigorous maize seeds based on Progressive Corrosion Joining algorithm of image

description: Additional file 1. 16 original root images and the corresponding 16 processed images using the presented algorithm in the paper.
DOI: 10.6084/m9.figshare.10326461.v1
title: MOESM1 of Root phenotypic detection of different vigorous maize seeds based on Progressive Corrosion Joining algorithm of image

description: Additional file 1. 16 original root images and the corresponding 16 processed images using the presented algorithm in the paper.
DOI: 10.6084/m9.figshare.10326470
title: MOESM2 of Root phenotypic detection of different vigorous maize seeds based on Progressive Corrosion Joining algorithm of image

description: Additional file 2. The key codes of the Progressive Corrosion algorithm.
DOI: 10.6084/m9.figshare.10326470.v1
title: MOESM2 of Root phenotypic detection of different vigorous maize seeds based on Progressive Corrosion Joining algorithm of image

description: Additional file 2. The key codes of the Progressive Corrosion algorithm.
DOI: 10.6084/m9.figshare.9277892
title: Additional file 13: of Genome-wide identification of GRAS genes in Brachypodium distachyon and functional characterization of BdSLR1 and BdSLRL1

description: Text 3. Synteny gene pairs between rice and Brachypodium distachyon. (TXT 1.28â M) (TXT 1320 kb)
DOI: 10.6084/m9.figshare.9277898
title: Additional file 15: of Genome-wide identification of GRAS genes in Brachypodium distachyon and functional characterization of BdSLR1 and BdSLRL1

description: Text 5. Protein sequences of GRAS in rice, maize, sorghum, wheat and Brachypodium distachyon. (TXT 270â K) (TXT 270 kb)
DOI: 10.6084/m9.figshare.9277901
title: Additional file 1 of Genome-wide identification of GRAS genes in Brachypodium distachyon and functional characterization of BdSLR1 and BdSLRL1

description: : Table S1. The chromosome location and physicochemical characteristics of BdGRAS genes. Table S2. The Ka and Ks values and estimated divergence time for tandemly duplicated BdGRAS genes. Table S3. The Ka and Ks values and estimated divergence time for segmentally duplicated BdGRAS genes. Table S4. The chromosome location, Ka and Ks values, and estimated divergence time for orthologous GRAS genes between Brachypodium and rice. Table S5. The chromosome location, Ka and Ks values, and estimated divergence time for orthologous GRAS genes between Brachypodium and sorghum. Table S6. The chromosome location, Ka and Ks values, and estimated divergence time for orthologous GRAS genes between Brachypodium and maize. Table S7. The chromosome location, Ka and Ks values, and estimated divergence time for orthologous GRAS genes between Brachypodium and wheat. Table S8. The primers used in this study. Table S9. GO annotations of BdGRAS proteins. Table S10. GO descriptions for BdGRAS proteins. Table S11. Numbers of known cis-elements in the promoter regions of BdGRAS genes. Table S12. Functions of GRAS genes in other species. (XLSX 163â K) (XLSX 162 kb)
DOI: 10.6084/m9.figshare.19767553
title: Parameters of tested system

description: Parameters of tested system
DOI: 10.15131/shef.data.22710040.v1
title: BAE T1A Hawk Starboard Wing Modal Test

description: Modal testing data pertaining to a test campaign conducted in 2022 on the starboard wing of a BAE systems T1A Hawk aircraft at the LVV in Sheffield.All data is in the self-describing .hdf5 format and can be opened in any hdf5 viewer by accessing the SBW_header.hdf5 file. Please see the attached README.pdf for instructions on how to access the data using the provided python package.A preprint of a paper demonstrating the usage of the dataset can be found at https://arxiv.org/abs/2310.04478<b>.</b>