cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q83bk3jq6
title: Data from: Genomic integrity of Phyciodes butterfly species in a region of contact (Lepidoptera: Nymphalidae)

description: Crescent butterflies of the Phyciodes tharos group have a long-standing
 reputation for taxonomic difficulty. We assessed species boundaries in the
 P. tharos group using genome-wide SNP data, focusing on sampling in
 western Canada where four species (P. tharos, P. cocyta, P. pulchella, and
 P. batesii) have classically been recognized. Phylogenetic and
 cluster-based analyses confirm that there are indeed four species based on
 the maintenance of genomic integrity in the presence of occasional
 hybridization and low levels of gene flow. Mitochondrial COI does not
 consistently distinguish species, with haplotypes extensively shared
 between species. Here, we provide data matrices and tree files from the
 phylogenetic and cluster-based analyses.
description: # Data from: Genomic integrity of Phyciodes butterfly species in a region
 of contact (Lepidoptera: Nymphalidae)
 [https://doi.org/10.5061/dryad.q83bk3jq6](https://doi.org/10.5061/dryad.q83bk3jq6) Data matrices and tree files for phylogenetic analyses of SNP & COI data, and data matrix for cluster-based analyses of SNP data. The SNP tree, STRUCTURE, and PCA results supported the existence of four traditionally recognized species in the *Phyciodes tharos* species group, in the province of Alberta, Canada. Phylogenetic analysis of COI sequences demonstrated that COI is not a reliable marker for identification in this group. ## Description of the data and file structure COI phylogenetic analysis Phyciodes_COI.nex Phylogenetic SNP analysis Phyciodes_SNP_phylogeny_156ind_50md.vcf Data matrix of 2443 SNPs (2130 informative SNPs) for 156 Phyciodes individuals. Filtered to &lt;50% missing data and &lt;5% minor allele frequency for phylogenetic analysis. Phyciodes_SNP.nex Data matrix of 2443 SNPs (2130 informative SNPs) for 156 Phyciodes individuals. In IUPAC format, created from the vcf file. Phyciodes_SNP.contree Maximum likelihood consensus tree of 2130 informative SNPs for 156 Phyciodes individuals. Produced from the Nexus file using IQ-TREE 2.0.7 and the built-in ModelFinder which selected GTR+F+R5. Ultrafast bootstrap values (2000 iterations) are included as "label". Phyciodes_SNP_50MR.tre Maximum likelihood 50% majority rule consensus tree. Nodes with &lt;50% UFBootstrap support in the Phyciodes_SNP.contree file were collapsed to make this file. Population genetics SNP analyses Phyciodes_SNP_popgen_152ind_20md.vcf Data matrix of 1477 SNPs for 152 Phyciodes individuals. Filtered to &lt;20% missing data and &lt;5% minor allele frequency for population genetics analyses. ## Sharing/Access information Raw fastq files containing genomic SNP data are deposited on NCBI SRA as BioProject PRJNA1032909. COI sequences are deposited on GenBank as accessions OR896666-OR896818.
DOI: 10.5061/dryad.9kd51c5qx
title: Code for: <em>Triolena</em> anisophylly data extraction

description: Anisophylly is a peculiar leaf trait in some opposite-leaved taxa where
 opposing leaves are distinctly unequal. This study uses an expert-curated
 specimen dataset to explore relationships of canopy cover and climate with
 the presence and intraspecific variation of anisophylly in the genus
 Triolena. Canopy and climate conditions are investigated between species
 and within a single species through beta regression models. R code for
 canopy cover, climate, and ecoregion data are included here, as well as
 code for PCA and beta regression model analyses. No relationship was found
 between canopy cover and anisophylly. However, anisophylly is associated
 with conditions of high precipitation and high isothermality, which is
 evident across Triolena and within a single species. In addition,
 partitioned ecoregion analyses illustrate that different types of
 anisophyllous leaf states occur in distinct ranges of precipitation and
 isothermality. Results suggest that anisophylly is associated with climate
 in Triolena.
description: # *Triolena* anisophylly code
 [https://doi.org/10.5061/dryad.9kd51c5qx](https://doi.org/10.5061/dryad.9kd51c5qx) Six R code files are included here. With our species occurrence dataset of coordinates, some of these files were used to extract data such as climate, canopy cover, and ecoregions. Others were used to run various analyses to understand relationships between anisophylly and the extracted data. Their specific uses are outlined below. ## Description of the data and file structure canopy_cover.R: Used to extract a value representing canopy cover from NASA Global 30 m Landsat Tree Canopy (Sexton et al. 2013). The earliest year in the dataset (2000) was used to minimize bias from deforestation. ecoregion_analysis.R: Used to investigate climate variables via two-way ANOVA analyses ecoregions and anisophylly type as dependent variables. pca_analysis.R: Used to run a principal component analysis of the 19 climatic variables across all *Triolena* species. regression_analysis.R: Used to examine individual relationships via beta regression models between climate, canopy cover, and anisophylly.  spatial_thinning_WorldClim.R: Used to spatially thin species occurences at a threshold of 10 km. WWF_ecoregions.R: Used to extract ecoregions for coordinates from WWF ecoregions (Olson et al. 2001) and WWF's Global 200 ecoregions (Olson and Dinerstein 2002). ## Sharing/Access information Data was derived from the following sources. Due to licensing compliance, we are unable to include these data here. * GBIF (Global Biodiversity Information System). * K (Kew Herbarium records) ## Code/Software All scripts were run in R.
DOI: 10.5061/dryad.v41ns1s3t
title: Data from: The largest freshwater odontocete: a South Asian river dolphin relative from the Proto-Amazonia

description: Several dolphin lineages have independently invaded freshwater systems.
 Among these, the evolution of the South Asian river dolphin Platanista and
 its closest relatives (Platanistidae) remains virtually unknown as fossils
 are scarce. Here, we describe Pebanista yacuruna gen. et sp. nov., a
 fossil dolphin from the Miocene proto-Amazonia of Peru, recovered in
 phylogenies as the closest relative of Platanista. Morphological
 characters such as an elongated rostrum and large supraorbital crests,
 along with ecological interpretations, indicate that this new taxon was
 fully adapted to freshwater environments. Pebanista constitutes
 the largest freshwater odontocete known, with an estimated body length of
 3 meters. It highlights the ample resource availability in the region,
 supporting biotic diversity during the Early to Middle Miocene. The
 finding of Pebanista in proto-Amazonian layers attests that platanistids
 ventured into freshwater ecosystems not only in South Asia, but also in
 South America, long before and independently of modern Amazon River
 dolphin Inia, during a crucial moment for the evolution of the Amazonian
 realm.
description: # Data from: The largest freshwater odontocete: a South Asian river
 dolphin relative from the Proto-Amazonia
 [https://doi.org/10.5061/dryad.v41ns1s3t](https://doi.org/10.5061/dryad.v41ns1s3t) Phylogenetic matrix used to conduct our analyses in:\ Benites-Palomino, A, Aguirre-Fernández, G., Baby, P., Ochoa, D., Altamirano, A., Flynn, J. J., Sánchez-Villagra, M., Tejada, J., de Muizon, C., & Salas-Gismondi, R. (2024). The largest freshwater odontocete: A South Asian River dolphin relative from the Proto-Amazonia. Science Advances. ## Description of the data and file structure Dataset modified from Bianucci et al. 2020 ## Sharing/Access information Dataset modified from: Bianucci, G., de Muizon, C., Urbina, M., & Lambert, O. (2020). Extensive diversity and disparity of the Early Miocene platanistoids (Cetacea, Odontoceti) in the southeastern Pacific (Chilcatay Formation, Peru). *Life*, *10*(3), 27
DOI: 10.5061/dryad.v6wwpzh31
title: What factors influence the rediscovery of lost tetrapod species? Appendix E: Lost and rediscovered species

description: For the study associated with this dataset, we created a database of lost
 and rediscovered tetrapod species and identified patterns in their
 distribution and factors influencing rediscovery. This appendix provides a
 list of the lost and rediscovered tetrapod species used in the analysis.
 It includes data on: taxonomy (class, order, family, species, common name,
 and whether the species is a subspecies); location (continent, country,
 region); each species threat status (as published on the IUCN Red List of
 Threatened Species: https://www.iucnredlist.org/). The appendix also
 indicates: whether each species was included in another list of lost
 tetrapod species published by the organisation Re:wild
 (https://www.rewild.org/); whether each species was used to construct the
 phylogenetic trees used for analysis.
description: Please refer to the published paper associated with this dataset,
 which provides a detailed description of the data collection
 methods.
description: # What factors influence the rediscovery of lost tetrapod species?
 Appendix E: Lost and rediscovered species
 ## Description of the data
 and file structure A list of 1280 tetrapod species (856 lost; 424
 rediscovered). This Microsoft Excel file includes the following
 information for each species: * taxonomy - class, order, family,
 scientific name, common name, and whether it is a subspecies (0 = not a
 subspecies; 1 = subspecies) * status - either lost or rediscovered (0 =
 lost; 1 = rediscovered) * location - continent, country, and region *
 whether the species was used for the construction of phylogenetic trees
 (yes / no) * whether the species was on the Re:wild-IUCN SSC list of lost
 species (0 = no; 1 = yes) * IUCN Red List status (LC = Least Concern, NT =
 Near Threatened, VU = Vulnerable, EN = Endangered, CR = Critically
 Endangered, CR(PE) = Critically Endangered (Possibly Extinct), EX =
 Extinct, DD = Data Deficient, NE = Not Evaluated).
DOI: 10.15468/dl.w2ug2h
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lackeya multiflora",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 146 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003840-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.1c59zw432
title: What factors influence the rediscovery of lost tetrapod species? Appendix F: Excluded species

description: For the study associated with this dataset, we created a database of lost
 and rediscovered tetrapod species and identified patterns in their
 distribution and factors influencing rediscovery.  Our lost
 species list included many of the species on another published list of
 lost species compiled by Re:wild (https://www.rewild.org/) in
 collaboration with the International Union for Conservation of Nature
 (IUCN) (https://www.iucn.org/). However, we did not include some of the
 species included on the Re:wild/IUCN list. This appendix provides a list
 of those species. It includes the following information for each
 species: taxonomy - class, order, scientific name, common name; threat
 status (as published on the IUCN Red List of Threatened Species); location
 - continent / island, range / country.
description: Please refer to the published paper associated with this dataset,
 which provides a detailed description of the data collection
 methods.
description: # What factors influence the rediscovery of lost tetrapod species?
 Appendix F: Excluded species
 ## Description of the data
 and file structure 215 species on the Re:wild-IUCN lost species list that
 were excluded from this study. This Excel file includes the following
 information for each species: * taxonomy - class, order, scientific name,
 common name; * threat status (as published on the IUCN Red List of
 Threatened Species); * location - continent / island, range / country.
DOI: 10.15468/dl.yzg2bh
title: Occurrence Download

description: A dataset containing 5869 records in GBIF matching the query:
SELECT
 '479' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= 44.06078664257346
 AND decimalLongitude &lt;= 53.451504131127514
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 5869 records were derived from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003822-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpfjjg
title: Occurrence Download

description: A dataset containing 67350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((99 8,98 8,98 7,99 7,99 8))",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 67350 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003794-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17613/5krxr-7q808
title: The People of Medieval Scotland 1093–1371

description: 1st edn 1093–1286, 2010; 2nd edn 1093–1314 with Ambler, Sophie, Giacometti, Alejandro, Hartland, Beth, and Stringer, Keith J., 2012; 3rd edn including mapping and SNA functionality, with Jakeman, Neil and Jackson, Cornell, 2016; 4th edn 1093–1371, with Ferraro, Ginestra, Hall, Elliott, and Taylor, Alice, 2019
DOI: 10.17613/evksn-1eg41
title: The People of Medieval Scotland 1093–1371

description: 1st edn 1093–1286, 2010; 2nd edn 1093–1314 with Ambler, Sophie, Giacometti, Alejandro, Hartland, Beth, and Stringer, Keith J., 2012; 3rd edn including mapping and SNA functionality, with Jakeman, Neil and Jackson, Cornell, 2016; 4th edn 1093–1371, with Ferraro, Ginestra, Hall, Elliott, and Taylor, Alice, 2019
DOI: 10.15468/dl.bsdbd2
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "GadmGid is one of (RUS.66_1, RUS.36_1, RUS.11_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Betula humilis"
 ]
}

 The dataset includes 34 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010975-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dts8nh
title: Occurrence Download

description: A dataset containing 1163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adenophora stricta",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1163 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010976-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/dzxc91
title: Bilan FD4 D5.tab

description: :unav
DOI: 10.57745/fz7vyo
title: TEER_complete results oxidative stress.tab

description: :unav
DOI: 10.57745/pw64wn
title: Bilan immunos.tab

description: :unav
DOI: 10.57745/3rzq8d
title: BilanMTS-1.tab

description: :unav
DOI: 10.57745/emimff
title: Tunel_histo_IPEC.tab

description: :unav
DOI: 10.57745/9o2nr6
title: Bilan enzymes.tab

description: :unav
DOI: 10.57745/q3vbb1
title: Bilan_LuciferaseYellow_HS.tab

description: :unav
DOI: 10.57745/svkied
title: Bilan stress ox.xlsx

description: :unav
DOI: 10.57745/a0enft
title: Investigating alterations associated with heat stress and the recovery of the intestinal barrier using IPEC-J2 as an intestinal epithelial porcine cell model

description: Heat stress (HS) is a growing concern due to global warming, especially for species with limited thermoregulatory capacity. The mechanisms underlying HS effects on digestive functions remain to be elucidated. The present study investigated the impacts of HS (41°C for 5 days) followed by a recovery phase (37°C for 5 days) to simulate a heat wave, on porcine intestinal epithelial cells (IPEC-J2) by focusing on barrier and defense mechanisms. During HS, cell viability and apoptosis, permeability, tight junction (TJ) proteins, mucin expression and oxidative stress balance were affected as compared to cells staying at 37°C (TN)(P&lt;0.05). During the recovery phase, most of the HS-induced alterations were rapidly reversed: apoptosis rates were normalized, paracellular permeability returned to TN levels, and TJ proteins (ZO-1 and occludin) localization was restored. Antioxidant enzyme abundance and Nrf2 levels were also similar to those in TN cells, but Hsp70 abundance decreased below TN levels. Altogether, this study reveals specific adaptive intestinal mechanisms to HS, contributing to partial resilience of the digestive functions under heat waves
DOI: 10.5281/zenodo.18361656
title: Feature reproducibility compressed data -- Part V

description: Mamma-Mia
DOI: 10.5281/zenodo.18361657
title: Feature reproducibility compressed data -- Part V

description: Mamma-Mia
DOI: 10.15468/dl.4z5hyz
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Burmeistera bullatifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010977-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18368382
title: Analysis of Premium Fuel and Diesel Pump Prices in Belize: The Role of Global Crude Oil Prices and Domestic Levied Charges (2012–2024)

description: This paper investigates the relationship between the prices of premium gasoline and diesel fuels in Belize and international crude oil prices, focusing on the role of government-imposed costs as a moderating factor between 2012 and 2024. By applying annual average prices of West Texas Intermediate (WTI) crude oil, domestic fuel prices, and fuel-related taxes and margins, the paper applies correlation analysis and linear regression modelling to measure the magnitude of these relationships. The results indicate a very strong positive correlation between WTI prices and fuel prices for both premium gasoline (r ≈ 0.69–0.75) and diesel fuel (r ≈ 0.71–0.78), while the imposed costs contribute about 30–45% to the final retail price and serve as a policy buffer during global price shocks. A regression-based counterfactual analysis indicates that the actual 2024 fuel prices deviated from the predicted values based on historical relationships, suggesting the presence of unmodeled costs such as transport, margins, or fiscal adjustments. The results have significant implications for fuel taxation policies, revenue stability, and energy diversification policies in small import-dependent economies. To improve the analysis, this revised version includes a literature review on analogous relationships in other small island developing states (SIDS), data tables with diesel fuel comparisons, and sensitivity tests to improve the robustness and interest of the analysis for policymakers and researchers.

Abbreviations: WTI (West Texas Intermediate), BZD (Belize Dollars), OLS (Ordinary Least Squares), USD (United States Dollars), SIDS (Small Island Developing States), GST (General Sales Tax), ET (Environmental Tax)
DOI: 10.5281/zenodo.18368381
title: Analysis of Premium Fuel and Diesel Pump Prices in Belize: The Role of Global Crude Oil Prices and Domestic Levied Charges (2012–2024)

description: This paper investigates the relationship between the prices of premium gasoline and diesel fuels in Belize and international crude oil prices, focusing on the role of government-imposed costs as a moderating factor between 2012 and 2024. By applying annual average prices of West Texas Intermediate (WTI) crude oil, domestic fuel prices, and fuel-related taxes and margins, the paper applies correlation analysis and linear regression modelling to measure the magnitude of these relationships. The results indicate a very strong positive correlation between WTI prices and fuel prices for both premium gasoline (r ≈ 0.69–0.75) and diesel fuel (r ≈ 0.71–0.78), while the imposed costs contribute about 30–45% to the final retail price and serve as a policy buffer during global price shocks. A regression-based counterfactual analysis indicates that the actual 2024 fuel prices deviated from the predicted values based on historical relationships, suggesting the presence of unmodeled costs such as transport, margins, or fiscal adjustments. The results have significant implications for fuel taxation policies, revenue stability, and energy diversification policies in small import-dependent economies. To improve the analysis, this revised version includes a literature review on analogous relationships in other small island developing states (SIDS), data tables with diesel fuel comparisons, and sensitivity tests to improve the robustness and interest of the analysis for policymakers and researchers.

Abbreviations: WTI (West Texas Intermediate), BZD (Belize Dollars), OLS (Ordinary Least Squares), USD (United States Dollars), SIDS (Small Island Developing States), GST (General Sales Tax), ET (Environmental Tax)
DOI: 10.15468/dl.5z2a8e
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Burmeistera crispiloba",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 59 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010979-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14614760
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.34740/kaggle/dsv/14614545
title: Pakistan Nuclear & Alternative Energy Statistics