cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5065/d657193b
title: Beaufort Sea Sediment Core Lipid Analysis, Station 5 (Excel). Version 1.0

description: This data set represents an analysis of fatty acids and neutral lipids in sediments from an undisturbed core taken with a 10cm diameter Benthos corer without a cutter or catcher during August and September 1987. These data are in Excel format.
DOI: 10.5065/d61g0jb5
title: HLY-02-03 ADCP Data (2-min Averages). Version 1.0

description: The United States Coast Guard Cutter (USCGC) Healy contains a 75-kHz phased-array Acoustic Doppler Current Profiler (ADCP) (Ocean Surveyor) mounted under the hull to transmit and receive echos of acoustic pulses from which to estimate vertical profiles of horizontal currents. Attitude information such as heading, pitch, and roll is provided by an Ashtech ADU2-3DGPS receiver while position data are provided by a Trimble Centurion p-code DGPS system. These data streams provide earth-referenced absolute horizontal currents and their vertical variations from about 20-m below the surface to the bottom or about 400-m depth. These data are 2 minute averages.
DOI: 10.15468/dl.b8gdjg
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacopa crenata",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034859-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6wq01w9
title: HLY-04-04 Weather Logs and Underway Data. Version 1.0

description: This data set contains weather log files prepared aboard ship by USCG personnel aboard the U.S. Coast Guard Cutter (USCGC) Healy during the HLY-04-04 cruise. It also contains the complete set of ship underway data.
DOI: 10.5065/d6s180k2
title: HLY-02-01 Ship Underway Data - Atmospheric Pressure (Plot). Version 1.0

description: This data set consists of atmospheric pressure plots from the SBI U.S. Coast Guard Cutter (USCGC) Healy Spring 2002 Cruise (HLY-02-01). Files are in .png format.
DOI: 10.15468/dl.4zm6zd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bacopa crenata",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034858-250920141307145/datasets/export for details.
DOI: 10.5065/d6n877ws
title: HLY-04-02 Mesozooplankton Grazing Rates (Excel). Version 1.0

description: This data set contains mesozooplankton grazing rates measured in ship-board incubations conducted during the SBI process cruises. Each data set presents individual bottle measurements of clearance and ingestion rates for each species/stage for each experiment, as ml/individual/hr and ng chlorophyll a/individual/hr, respectively. Station number, station name, experiment number, date, position (latitude, longitude), bottom depth, and initial chlorophyll a concentration are presented. These data were collected aboard the U.S. Coast Guard Cutter (USCGC) Healy. These data are in Excel format.
DOI: 10.15468/dl.zeh4rh
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calamus rhomboideus)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 133 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034861-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6hh6h5g
title: HLY-02-03 Mesozooplankton Grazing Rates (Excel). Version 1.0

description: This data set contains mesozooplankton grazing rates measured in ship-board incubations conducted during the SBI U.S. Coast Guard Cutter (USCGC) Healy Process cruises. Each data set presents individual bottle measurements of clearance and ingestion rates for each species / stage for each experiment, as ml/individual/hr and ng chlorophyll a/individual/hr, respectively. Station number, station name, experiment number, date, position (latitude, longitude), bottom depth, and initial chlorophyll a concentration are presented. These data are in Excel format.
DOI: 10.5065/d6cr5rfr
title: HLY-02-01 Satellite, DMSP OLS 1 KM Visible Imagery. Version 1.0

description: This dataset contains imagery of the visible channel from the F12, F13 and F14 DMSP satellites observed during the SBI U.S Coast Guard Cutter (USCGC) Healy 2002 spring cruise (HLY-02-01). All files are in .gif formatand are at 1KM resolution.
DOI: 10.15468/dl.4dhe7c
title: Occurrence Download

description: A dataset containing 10839 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetodon lunulatus"
 ]
}

 The dataset includes 10839 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034862-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d68050p8
title: HLY-04-02 Service Group Bottle Data (WHP Format). Version 1.0

description: This data set consists of Bottle Data in WHP Format from the Spring 2004 U.S. Coast Guard Cutter (USCGC) Healy Cruise (HLY-04-02). These data are in a single comma-delimited data file which contains the data from all casts.
DOI: 10.5065/d64747x3
title: UW Mooring Data for the Northern Chukchi Sea 2002-2004. Version 1.0

description: This is an archive of data from four moorings (SBI3-02, SBI4-02, SBI3-03 and SBI4-03) deployed by the University of Washington (UW) at two sites in the northern Chukchi Sea from July 2002 to September 2004, with mooring turn-around during September 2003. Moorings were: - deployed in 2002 from the U. S. Coast Guard Cutter (USCGC) Polar Star (SBI cruise AWS02), - recovered and redeployed in 2003 from the U.S. Coast Guard Cutter (USCGC) Healy (SBI cruise HLY-03-03) - finally recovered in 2004 from the USCGC Healy (SBI cruise HLY-04-04).
DOI: 10.15468/dl.3j98e7
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (d0ef3d17-aacf-44cb-b6aa-682ceb9b7222, 67b2263f-6990-4d9d-b32b-20aa72ef4fbc, 8483a1f0-1032-11db-ae00-b8a03c50a862, ff90b050-c256-11db-b71b-b8a03c50a862, 5fa89f68-9af0-4a0d-8998-ea39695c1db9, ef3ec46c-c2e6-4674-a663-77b334fa6003, 1e9400fa-ce73-4737-9eaa-f25df148945c, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 3fe68b43-b4b5-4b04-82d8-cca29f8e2164)",
 "TaxonKey is Mobula birostris",
 "Year 1970-2025"
 ]
}

 The dataset includes 414 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034863-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d60g3h77
title: HLY-04-02 ADCP Data (5-min Averages). Version 1.0

description: The United States Coast Guard Cutter (USCGC) Healy contains a 75-kHz phased-array Acoustic Doppler Current Profiler (ADCP) (Ocean Surveyor) mounted under the hull to transmit and receive echos of acoustic pulses from which to estimate vertical profiles of horizontal currents. Attitude information such as heading, pitch, and roll is provided by an Ashtech ADU2-3DGPS receiver while position data are provided by a Trimble Centurion p-code DGPS system. These data streams provide earth-referenced absolute horizontal currents and their vertical variations from about 20-m below the surface to the bottom or about 400-m depth.
DOI: 10.5065/d6vt1q58
title: HLY-02-01 Hydrographic Data Section Plots. Version 1.0

description: This data set consists of plots of hydrographic data by section collected during the Spring 2002 United States Coast Guard Cutter (USCGC) Healy Cruise (HLY-02-01). The plots are png images and are provided in a single zip file for the entire cruise.
DOI: 10.5065/d6r20zg9
title: HLY-04-02 Video Plankton Recorder (VPR) Data. Version 1.0

description: Data were collected on cruise HLY0402 to the Chukchi and Beaufort Seas on the U.S. Coast Guard Cutter (USCGC) Healy from May 16, 2004 to June 23, 2004 as part of the Shelf Basin Interactions program. The primary sampling instrument was a self-contained, battery powered, single camera Auto Video Plankton Recorder (AutoVPR; SeaScan, Inc.) that was deployed from the stern of the ship in a stainless-steel cage. The AutoVPR records video image frames from a Pulnix TM7 CCD camera at 720 x 640 pixels at 30 Hz as a wavelet compressed data stream together with coincident data from a SeaBird SBE49 Conductivity Temperature Depth (CTD) operating at 10Hz.
DOI: 10.5065/d6m906rz
title: HLY-02-01 Hydrographic Data Station Plots. Version 1.0

description: This data set consists of plots of hydrographic data by station collected during the Spring 2002 United States Coast Guard Cutter (USCGC) Healy Cruise (HLY-02-01). The plots are png images and are provided in a single zip file for the entire cruise.
DOI: 10.15468/dl.k9accd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbena bonariensis",
 "Country is Malaysia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034866-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6gh9g13
title: HLY-04-02 High Performance Liquid Chromatography (HPLC) Pigment Data (Excel). Version 1.0

description: This data set includes pigment analyses using the High Performance Liquid Chromatography (HPLC) method proposed by Wright et. al. (1991). Samples were collected at the surface and at the chlorophyll max, identified from the in situ fluorometer on the Conductivity Temperature Depth (CTD). These data are from the 2004 Spring SBI cruise aboard the U.S. Coast Guard Cutter (USCGC) Healy. These data are in Excel format.
DOI: 10.15468/dl.rss9qh
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calamus ruvidus)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034865-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebcjvn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbena bonariensis",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034864-250920141307145/datasets/export for details.
DOI: 10.15468/dl.5dvjhe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbena bonariensis",
 "Country is Mozambique",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034867-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6br8q8x
title: SBI Microzooplankton Grazing Data (Excel). Version 1.0

description: Microzooplankton grazing impact on phytoplankton was assessed using the Landry-Hassett dilution technique in the western Arctic Ocean during spring and summer 2002 and 2004. Forty experiments were completed in a region encompassing productive shelf regions of the Chukchi Sea, mesotrophic slope regions of the Beaufort Sea off the North Slope of Alaska, and oligotrophic deep water sites in the Canada Basin. These data are in Excel format.
DOI: 10.5281/zenodo.17238878
title: NeoModeling Framework: Leveraging Graph-Based Persistence for Large-Scale Model-Driven Engineering (replication package)

description: This is the replication package for the paper "NeoModeling Framework: Leveraging Graph-Based Persistence for Large-Scale Model-Driven Engineering" where we present Neo Modeling Framework (NMF), an open-source set of tools primarily designed to manipulate ultra-large datasets in the Neo4j database.  

Repository structure



NeoModelingFramework.zip - contains the replication package, including the source code for NMF, test files to run the evaluation, used artifacts, and instructions to run the framework. The most import folders are listed below:



codeGenerator - NMF generator module

modelLoader - NMF loader module

modelEditor - NMF editor module

Evaluation - contains the evaluation artifacts and results (a copy



metamodels - Ecore files used for RQ1 and RQ2

results - CSV files with the results from RQ1, RQ2 and RQ3

analysis - Jupyter notebooks used to analyze and plot the results






Running NMF

The best way to run NMF is following the instructions at our GitHub repository. A copy of the Readme file is also present inside the zip file available here.

 

Empirical Evaluation

Make sure that you follow the instructions to run NMF.

The quantitative evaluation can be re-run by running RQ1Eval.kt, RQ2Eval.kt inside modelLoader/src/test/kotlin/evaluation and RQ2Eval.kt inside modelEditor/src/test/kotlin/evaluation.

Make sure that you have an empty instance of Neo4j running.

Results will be generated as CSV files, under Evaluation/results and the results can be plotted by running the Jupyter Notebooks at Evaluation/analysis.

Please note that due to differences in hardware, re-running the experiments will probably generate slightly different results than those reported in the paper.
DOI: 10.5065/d6707zh2
title: HLY-04-02 Bacterial Abundance and Production (Excel). Version 1.0

description: This data set contains data on bacterial abundance and production using samples obtained from morning Conductivity, Temperature, Depth (CTD) casts during the HLY-04-02 Cruise of SBI aboard the U.S. Coast Guard Cutter (USCGC) Healy. A companion data set is available in ASCII format.
DOI: 10.5065/d63776t5
title: Thorium and Uranium Radioisotope Data from HLY-02-03. Version 1.0

description: This data set includes data corresponding to samples collected by the Moran Geochemistry Lab on the second leg aboard the United States Coast Guard Cutter (USCGC) Healy on the SBI Phase II investigation in the Chukchi and Beaufort Seas from 21 July 2002 to 17 Aug 2002 (WAGB-20). Data are organized by station and sample depth, with station position (latitude and longitude) also included. This data set includes the following radio-isotopes: 234Th, 228Th, and 238U. The thorium data include dissolved, suspended particulate, and large particulate values in units of disintegrations per minute per liter (dpm/L). The uranium data were derived from salinity (salinity ppt * 0.069 dpm/ppt = 238U dpm/L ; Chen et al, 1986). This data set also includes values for large particulate organic carbon (POC) and large particulate organic nitrogen (PON) .
DOI: 10.5065/d6zk5dr6
title: NCEP Re-analysis Monthly Mean Data 2001-2004 for SBI Domain (Matlab). Version 1.0

description: This data set contains National Centers for Environmental Prediction (NCEP) re-analysis monthly mean data 2001-2004 for the SBI domain in Matlab format.
DOI: 10.5065/d6tt4p2b
title: HLY-02-03 Primary Production (ASCII). Version 1.0

description: Primary productivity was measured by 14C (carbon) uptake fixation with simulated in situ (SIS) incubations. Isotope stocks were prepared according to the recommendations of Fitzwater et al., 1982. Our SIS incubator had neutral density and/or blue plastic filters to simulate in situ irradiance spectra at depths consistent with sample collection. Temperature was regulated with flowing surface seawater. Samples were placed in 280ml polycarbonate bottles and inoculated with 370 kBq 14C-NaHCO3 and incubated for short period (S) 6-8 hours and long period (L) ~24 hours. Total activity added and particulate adsorption was measured at time zero in parallel samples. Particulate material was harvested on 25mm Whatman GF/F filters and rinsed with 5-10ml of 0.01 N HCL in filtered seawater to remove inorganic carbon. Radioactivity was assayed by liquid scintillation counting and corrected for particulate adsorption at time zero, background and counting efficiency. Dataset includes hourly (mg C m-3 h-1) and daily rates (mg C m-2 d-1) of 14C uptake measured with both short and long incubation periods with matching chlorophyll (mg m- 3) measuring using the fluorometric method of Holm-Hansen (1965) by Dean Stockwell of the University of Alaska, Fairbanks. These ASCII data were collected aboard the U.S. Coast Guard Cutter (USCGC) Healy cruise HLY-02-03.
DOI: 10.5065/d6q23xbx
title: HLY-04-03 Benthic Faunal Summaries (abundance, biomass, and dominance) (ASCII). Version 1.0

description: This data set contains benthic infaunal abundance, biomass (g/m2), carbon-converted biomass (gC/m2), and numbers of taxa for each station. Station dates and locations are also provided. This file also lists the top three benthic taxa for abundance, formalin-preserved wet weight biomass (g/m2), and carbon-converted biomass (gC/m2) at each station. Samples included in this data set were collected from July 16, 2004 to August 26, 2004 from the United States Coast Guard Cutter (USCGC) Healy (WAGB-20). This sampling on Healy was funded through the Shelf-Basin Interactions project, which is funded by both the National Science Foundation and the Office of Naval Research.
DOI: 10.5065/d6k935mk
title: HLY-02-01 Mesozooplankton Grazing Rates (Excel). Version 1.0

description: This data set contains mesozooplankton grazing rates measured in ship-board incubations conducted during the SBI process cruises. Each data set presents individual bottle measurements of clearance and ingestion rates for each species/stage for each experiment, as ml/individual/hr and ng chlorophyll a/individual/hr, respectively. Station number, station name, experiment number, date, position (latitude, longitude), bottom depth, and initial chlorophyll a concentration are presented. These data were collected aboard the U.S. Coast Guard Cutter (USCGC) Healy. These data are in Excel format.
DOI: 10.5065/d6fj2dvd
title: HLY-04-03 Biomarkers (ASCII). Version 1.0

description: This data set contains dissolved organic carbon (DOC) and Nitrogen (DON) as well as dissolved amino acidsfrom the U.S. Coast Guard Cutter (USCGC) Healy HLY-04-03 cruise of the SBI project. Reported DON values were calculated by subtracting inorganic nitrogen species(NO3+NO2+NH4) from TDN. Reported values of dissolved amino acids are summed concentrations of 18 individually measured amino acids. These data are in ASCII format.
DOI: 10.5065/d69s1p43
title: HLY-02-03 ADCP Data (30-min Averages). Version 1.0

description: The United States Coast Guard Cutter (USCGC) Healy contains a 75-kHz phased-array Acoustic Doppler Current Profiler (ADCP) (Ocean Surveyor) mounted under the hull to transmit and receive echos of acoustic pulses from which to estimate vertical profiles of horizontal currents. Attitude information such as heading, pitch, and roll is provided by an Ashtech ADU2-3DGPS receiver while position data are provided by a Trimble Centurion p-code DGPS system. These data streams provide earth-referenced absolute horizontal currents and their vertical variations from about 20-m below the surface to the bottom or about 400-m depth.
DOI: 10.15468/dl.2yf8qy
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Calamus schlechterianus)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034868-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/t4b9y8
title: What does the morphology tell us about it? Completing the reverse taxonomy of Pericharini Grishin, 2019 (Hesperiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Suênia-Bastos, Ayane, Mielke, Olaf Hermann Hendrik, Casagrande, Mirna Martins (2025): What does the morphology tell us about it? Completing the reverse taxonomy of Pericharini Grishin, 2019 (Hesperiinae). Zootaxa 5604 (2): 101-117, DOI: 10.11646/zootaxa.5604.2.1, URL: https://doi.org/10.11646/zootaxa.5604.2.1AbstractPericharini Grishin, 2019 (Hesperiidae: Hesperiinae), a recently described tribe based on molecular data, comprises two subtribes, seven genera, and 32 Neotropical species. In the absence of the needed morphological diagnoses for both subtribes, the aim of this paper is to present the morphological characteristics of Pericharini, and its two subtribes. Specimens representing the seven genera of Pericharini were examined in this study. The morphology of Pericharini is described, Orphina and Pericharina are diagnosed based on characters found in the forewing and the male genitalia. In addition, this paper briefly discusses the lack of morphological characters that distinguish Orses Godman, 1901 and Perichares Scudder, 1872.
DOI: 10.15468/dl.752bd5
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies cephalonica Loudon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 645 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016656-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ecdvvu
title: Occurrence Download

description: A dataset containing 23190 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Picea glauca (Moench) Voss"
 ]
}

 The dataset includes 23190 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016655-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.