cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9915911.v1
title: Three novel Ambrosia <i>Fusarium</i> Clade species producing clavate macroconidia known (<i>F. floridanum</i> and <i>F. obliquiseptatum</i>) or predicted (<i>F. tuaranense</i>) to be farmed by <i>Euwallacea</i> spp. (Coleoptera: Scolytinae) on woody hosts

description: The Ambrosia <i>Fusarium</i> Clade (AFC) comprises at least 16 genealogically exclusive species-level lineages within clade 3 of the <i>Fusarium solani</i> species complex (FSSC). These fungi are either known or predicted to be farmed by Asian <i>Euwallacea</i> ambrosia beetles (Coleoptera: Curculionidae: Scolytinae) in the tribe Xyleborini as a source of nutrition. To date, only 4 of the 16 AFC lineages have been described formally. In the absence of Latin binomials, an ad hoc nomenclature was developed to distinguish the 16 species lineages as AF-1 to AF-16. Herein, <i>Fusarium</i> species AF-3, AF-5, and AF-7 were formally described as <i>F. floridanum, F. tuaranense</i>, and <i>F. obliquiseptatum</i>, respectively. <i>Fusarium floridanum</i> farmed by <i>E. interjectus</i> on box elder (<i>Acer negundo</i>) in Gainesville, Florida, was distinguished morphologically by the production of sporodochial conidia that were highly variable in size and shape together with greenish-pigmented chlamydospores. <i>Fusarium tuaranense</i> was isolated from a beetle-damaged Paŕa rubber tree (<i>Hevea brasiliense</i>) in North Borneo, Malaysia, and was diagnosed by production of the smallest sporodochial conidia of any species within the AFC. Lastly, <i>F. obliquiseptatum</i> was farmed by an unnamed ambrosia beetle designated <i>Euwallacea</i> sp. 3 (<i>E. fornicatus</i> species complex) on avocado (<i>Persea americana</i>) in Queensland, Australia. It uniquely produces some clavate sporodochial conidia with oblique septa. Maximum likelihood analysis of a multilocus data set resolved these three novel AFC taxa as phylogenetically distinct species based on genealogical concordance. Particularly where introduced into exotic environments, these exotic mutualists pose a serious threat to the avocado industry, native forests, and urban landscapes in diverse regions throughout the world.
DOI: 10.6084/m9.figshare.9915800
title: OIC2019 Manufacturing Problem Contest: Target data and Results

description: The excel file contains the data points for the target transmittance spectra of the 2019 Manufacturing Problem Contest (the 'Yucca Problem').<br>The PDF file is a poster presenting the results of the 2019 OIC Manufacturing Problem Contest.
DOI: 10.6084/m9.figshare.9915800.v1
title: OIC2019 Manufacturing Problem Contest: Target data and Results

description: The excel file contains the data points for the target transmittance spectra of the 2019 Manufacturing Problem Contest (the 'Yucca Problem').<br>The PDF file is a poster presenting the results of the 2019 OIC Manufacturing Problem Contest.
DOI: 10.6084/m9.figshare.9914345
title: GPC of polyproE2

description: GPC data for poly(pro-estrogen)<br>
DOI: 10.6084/m9.figshare.9914339
title: DSC of polyproE2

description: DSC data of poly(pro-estrogen) material
DOI: 10.6084/m9.figshare.9914342
title: TGA of polyproE2

description: TGA data of poly(pro-estrogen)
DOI: 10.6084/m9.figshare.9914342.v1
title: TGA of polyproE2

description: TGA data of poly(pro-estrogen)
DOI: 10.6084/m9.figshare.9914291
title: Internal car temperature data

description: Internal temperature data from four vehicles over a two year period.
DOI: 10.6084/m9.figshare.9914303
title: supplementary_data.xlsx

description: Complete data and analyses supporting Park et al. (in submission) Caloric restriction-mediated lifespan extension is associated with positive energy balance
DOI: 10.6084/m9.figshare.9914291.v1
title: Internal car temperature data

description: Internal temperature data from four vehicles over a two year period.
DOI: 10.6084/m9.figshare.9914303.v1
title: supplementary_data.xlsx

description: Complete data and analyses supporting Park et al. (in submission) Caloric restriction-mediated lifespan extension is associated with positive energy balance
DOI: 10.6084/m9.figshare.9914138
title: Metadata record for: Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:A revised version was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9914126
title: Metadata record for: An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases

description: This dataset contains key characteristics about the data described in the Data Descriptor An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9914138.v1
title: Metadata record for: Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:A revised version was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9914279.v1
title: DATASET do estudo das praças de pedágio de SP

description: DATASET do estudo das praças de pedágio nas rodovias Casterlo Branco SP-280 e Marechal Rondon SP-300 com suporte espacial desenvolvido em POSTGRESQL versão 10 ou superior. <br>Deve-se ativar a extensão espacial POSTGIS versão 2.5 ou superior.<br>
DOI: 10.6084/m9.figshare.9914126.v2
title: Metadata record for: An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases

description: This dataset contains key characteristics about the data described in the Data Descriptor An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9914126.v1
title: Metadata record for: An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases

description: This dataset contains key characteristics about the data described in the Data Descriptor An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.17866/rd.salford.9914084.v1
title: Storyboard and Shooting Script for VR/360 Film Document

description: A storyboard and shooting script used for our studio film shoot for <i>The Ballad of Isosceles in VR </i>(June 2019, New Adelphi Studio Theatre).
DOI: 10.6084/m9.figshare.9913919
title: ABC Dataset (30k documents)

description: ABC dataset for the 30k documents.
DOI: 10.17866/rd.salford.9914084.v2
title: Item 8: Storyboard and Shooting Script for VR/360 Film Document

description: A storyboard and shooting script used for our studio film shoot for <i>The Ballad of Isosceles in VR </i>(June 2019, New Adelphi Studio Theatre).
DOI: 10.6084/m9.figshare.9913886
title: ABC Gold standard dataset for 300 documents

description: Manually corrected gold standard dataset for 300 documents of ABC.
DOI: 10.6084/m9.figshare.9913886.v1
title: ABC Gold standard dataset for 300 documents

description: Manually corrected gold standard dataset for 300 documents of ABC.
DOI: 10.17866/rd.salford.9914084.v3
title: Item 9: Storyboard and Shooting Script for VR/360 Film Document

description: A storyboard and shooting script used for our studio film shoot for <i>The Ballad of Isosceles in VR </i>(June 2019, New Adelphi Studio Theatre).
DOI: 10.17866/rd.salford.9913880.v1
title: New Lighting/Scenographic Design for The Ballad of Isosceles

description: The new and comprehensive scenographic approach and lighting design for <i>The Ballad of Isosceles</i>, completed with West End lighting designer Marty Langthorne over 3 days of studio experimentation at Cass School of Arts and Architecture at London Metropolitan University in February 2019.
DOI: 10.17866/rd.salford.9913880.v2
title: Item 7: New Lighting/Scenographic Design

description: The new and comprehensive scenographic approach and lighting design for <i>The Ballad of Isosceles</i>, completed with West End lighting designer Marty Langthorne over 3 days of studio experimentation at Cass School of Arts and Architecture at London Metropolitan University in February 2019.
DOI: 10.17866/rd.salford.9913880.v3
title: Item 5: New Lighting/Scenographic Design

description: The new and comprehensive scenographic approach and lighting design for <i>The Ballad of Isosceles</i>, completed with West End lighting designer Marty Langthorne over 3 days of studio experimentation at Cass School of Arts and Architecture at London Metropolitan University in February 2019.
DOI: 10.17866/rd.salford.9913880.v4
title: Item 6: New Lighting/Scenographic Design

description: The new and comprehensive scenographic approach and lighting design for <i>The Ballad of Isosceles</i>, completed with West End lighting designer Marty Langthorne over 3 days of studio experimentation at Cass School of Arts and Architecture at London Metropolitan University in February 2019.
DOI: 10.6084/m9.figshare.9913694
title: Metadata record for: Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9913691
title: trinity_transcriptome

description: trinity assembly transcriptome
DOI: 10.6084/m9.figshare.9913691.v1
title: trinity_transcriptome

description: trinity assembly transcriptome
DOI: 10.6084/m9.figshare.9913667
title: Supporting_Information_File.xlsx

description: Data on plasma TMAO and outcomes of baseline fasting plasma glucose, HOMA-IR, visit 2 fasting plasma glucose and Hba1c
DOI: 10.6084/m9.figshare.9913664
title: DEGS.fasta

description: Degs genes obtenidos usando DESeq 2 Fold-change 4 y p-evalue 0.001<br>
DOI: 10.6084/m9.figshare.9913694.v2
title: Metadata record for: Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9913664.v1
title: DEGS.fasta

description: Degs genes obtenidos usando DESeq 2 Fold-change 4 y p-evalue 0.001<br>
DOI: 10.6084/m9.figshare.9913667.v2
title: Supporting_Information_File.xlsx

description: Data on plasma TMAO and outcomes of baseline fasting plasma glucose, HOMA-IR, visit 2 fasting plasma glucose and Hba1c
DOI: 10.6084/m9.figshare.9913694.v1
title: Metadata record for: Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.9913667.v1
title: Supporting_Information_File.xlsx

description: Data on plasma TMAO and outcomes of baseline fasting plasma glucose, HOMA-IR, visit 2 fasting plasma glucose and Hba1c
DOI: 10.6084/m9.figshare.9913211
title: Tree Growth and dynamics of mangroves in SW Nigeria.-Biotropica - Data_Figshare.doc

description: Study Area: Western section of the Niger Delta of NigeriaMethodology:A total of one hundred and twenty sediment samples were collected from twenty quadrats each from the four sites and the control. Twenty quadrats of 20 m by 20 m were located within the creeks surrounding each of the four major rivers linking the hinterland with the Atlantic Ocean. These rivers include the following: Benin River, Forcados River, Escravos River, and Ramos River. Within each quadrat, vegetation measurements (Girth, diameter at breast height, basal area, height, crown diameter, tree density) and sediment sampling were carried out. Sediment sampling was carried out using a sediment core. One hundred and twenty samples from a depth of 0-30 cm, were collected from the sample and control sites. The sediment samples were collected in well labelled bags and laboratory analysis carried out for the following parameters: Particle size composition (Hydrometer method, Bouyoucous 1951), Soil pH, Electrical Conductivity, Organic carbon (Walkey Black combustion method),Total Nitrogen (Kjeldahl method), Phosphorus (Bray-P1 method), Exchangeable cations (Calcium, Sodium, Potassium and Magnesium) flame photometer and atomic absorption spectrophotometer, Exchangeable acidity, Cation Exchangeable Capacity (Summation method), Total Nitrogen (Kjeldahl method). <b></b>Data Analysis: Multiple regression (Dependent variable- Height , Girth), Independent variable( Sediment parameters)
DOI: 10.6084/m9.figshare.9913202
title: Transcriptome sequencing in Scutiger sikimmensis

description: <b>Data in Brief</b><br>Title: Transcriptome sequencing and the presence of high-altitude and sex-determination genes in <i>Scutiger sikimmensis</i><br>Authors: Sylvia Hofmann<sup>1</sup>, Heiner Kuhl<sup>2</sup>, Chitra Bahadur Baniya<sup>3</sup>, Matthias Stöck<sup>2</sup><br><br>Affiliations<br><sup>1</sup>UFZ - Helmholtz-Centre for Environmental Research, Department of Conservation Biology, Permoserstrasse 15, 04318 Leipzig, Germany<br><sup>2</sup>Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 301, 12587 Berlin, Germany<br><sup>3</sup>Tribhuvan University, Central Department of Botany, Kirtipur, Kathmandu, Nepal<br><br><b>Abstract</b><br>The Himalayas are one of earth’s hotspots of biodiversity. However, modern evolutionary genomic studies in Himalayan vertebrates are still at the beginning. Moreover, in organisms, like most amphibians with relatively high DNA content, whole genome sequencing remains bioinformatically challenging and no complete nuclear genomes are available for Himalayan amphibians. Here, we present the first well-annotated multi-tissue transcriptome of a Himalayan lazy toad (Scutiger sikkimensis). Applying Illumina NextSeq 500 RNAseq to six tissues, we obtained 41.32 Gb of sequences, assembled to ~111,000 unigenes, and annotated them in seven functional databases. The annotation results and their statistics can be found in Supplementary Material S8 and S9. <br><br>Key words: Himalayan lazy toad; Trinity; RNAseq; Illumina; N50<br><b>Specifications</b> <br>Organism/cell line/tissue: <i>Scutiger sikkimensis</i>/brain, heart, liver, lung, kidney, testis tissue<br>Sex: male<br>Sequencer or array type: Illumina NextSeq 500<br>NCBI Project ID: PRJNA532534<br>Accession numbers: SAMN11403593-SAMN11403598SRA numbers: SRR9953599-SRR9953604<br>Experimental factors: De novo transcriptome assembly of <i>Scutiger sikkimensis</i><br>Experimental features: Tissue samples of a male specimen of the lazy toad<i> Scutiger sikkimensis</i> was collected for total RNA isolations. Prepared a paired-end library, sequenced by the NextSeq 500 system. The obtained data was subjected to de novo assembly.<br>Consent: N/A<br>Sample source location: Central Himalaya, Nepal<br>
DOI: 10.6084/m9.figshare.9913211.v1
title: Tree Growth and dynamics of mangroves in SW Nigeria.-Biotropica - Data_Figshare.doc

description: Study Area: Western section of the Niger Delta of NigeriaMethodology:A total of one hundred and twenty sediment samples were collected from twenty quadrats each from the four sites and the control. Twenty quadrats of 20 m by 20 m were located within the creeks surrounding each of the four major rivers linking the hinterland with the Atlantic Ocean. These rivers include the following: Benin River, Forcados River, Escravos River, and Ramos River. Within each quadrat, vegetation measurements (Girth, diameter at breast height, basal area, height, crown diameter, tree density) and sediment sampling were carried out. Sediment sampling was carried out using a sediment core. One hundred and twenty samples from a depth of 0-30 cm, were collected from the sample and control sites. The sediment samples were collected in well labelled bags and laboratory analysis carried out for the following parameters: Particle size composition (Hydrometer method, Bouyoucous 1951), Soil pH, Electrical Conductivity, Organic carbon (Walkey Black combustion method),Total Nitrogen (Kjeldahl method), Phosphorus (Bray-P1 method), Exchangeable cations (Calcium, Sodium, Potassium and Magnesium) flame photometer and atomic absorption spectrophotometer, Exchangeable acidity, Cation Exchangeable Capacity (Summation method), Total Nitrogen (Kjeldahl method). <b></b>Data Analysis: Multiple regression (Dependent variable- Height , Girth), Independent variable( Sediment parameters)
DOI: 10.6084/m9.figshare.9913202.v1
title: Transcriptome sequencing in Scutiger sikimmensis

description: <b>Data in Brief</b><br>Title: Transcriptome sequencing and the presence of high-altitude and sex-determination genes in <i>Scutiger sikimmensis</i><br>Authors: Sylvia Hofmann<sup>1</sup>, Heiner Kuhl<sup>2</sup>, Chitra Bahadur Baniya<sup>3</sup>, Matthias Stöck<sup>2</sup><br><br>Affiliations<br><sup>1</sup>UFZ - Helmholtz-Centre for Environmental Research, Department of Conservation Biology, Permoserstrasse 15, 04318 Leipzig, Germany<br><sup>2</sup>Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 301, 12587 Berlin, Germany<br><sup>3</sup>Tribhuvan University, Central Department of Botany, Kirtipur, Kathmandu, Nepal<br><br><b>Abstract</b><br>The Himalayas are one of earth’s hotspots of biodiversity. However, modern evolutionary genomic studies in Himalayan vertebrates are still at the beginning. Moreover, in organisms, like most amphibians with relatively high DNA content, whole genome sequencing remains bioinformatically challenging and no complete nuclear genomes are available for Himalayan amphibians. Here, we present the first well-annotated multi-tissue transcriptome of a Himalayan lazy toad (Scutiger sikkimensis). Applying Illumina NextSeq 500 RNAseq to six tissues, we obtained 41.32 Gb of sequences, assembled to ~111,000 unigenes, and annotated them in seven functional databases. The annotation results and their statistics can be found in Supplementary Material S8 and S9. <br><br>Key words: Himalayan lazy toad; Trinity; RNAseq; Illumina; N50<br><b>Specifications</b> <br>Organism/cell line/tissue: <i>Scutiger sikkimensis</i>/brain, heart, liver, lung, kidney, testis tissue<br>Sex: male<br>Sequencer or array type: Illumina NextSeq 500<br>NCBI Project ID: PRJNA532534<br>Accession numbers: SAMN11403593-SAMN11403598SRA numbers: SRR9953599-SRR9953604<br>Experimental factors: De novo transcriptome assembly of <i>Scutiger sikkimensis</i><br>Experimental features: Tissue samples of a male specimen of the lazy toad<i> Scutiger sikkimensis</i> was collected for total RNA isolations. Prepared a paired-end library, sequenced by the NextSeq 500 system. The obtained data was subjected to de novo assembly.<br>Consent: N/A<br>Sample source location: Central Himalaya, Nepal<br>
DOI: 10.6084/m9.figshare.9913130
title: Molecular Characterization of 170 New gDNA-SSR Markers for Genetic Diversity in Button Mushroom (<i>Agaricus bisporus</i>)

description: We designed 170 new simple sequence repeat (SSR) markers based on the whole-genome sequence data of button mushroom (<i>Agaricus bisporus</i>), and selected 121 polymorphic markers. A total of 121 polymorphic markers, the average major allele frequency (M<sub>AF</sub>) and the average number of alleles (N<sub>A</sub>) were 0.50 and 5.47, respectively. The average number of genotypes (N<sub>G</sub>), observed heterozygosity (H<sub>O</sub>), expected heterozygosity (H<sub>E</sub>), and polymorphic information content (PIC) were 6.177, 0.227, 0.619, and 0.569, respectively. Pearson’s correlation coefficient showed that M<sub>AF</sub> was negatively correlated with N<sub>G</sub> (−0.683), N<sub>A</sub> (−0.600), H<sub>O</sub> (−0.584), and PIC (−0.941). N<sub>G</sub>, N<sub>A</sub>, H<sub>O,</sub> and PIC were positively correlated with other polymorphic parameters except for M<sub>AF</sub>. UPGMA clustering showed that 26 <i>A. bisporus</i> accessions were classified into 3 groups, and each accession was differentiated. The 121 SSR markers should facilitate the use of molecular markers in button mushroom breeding and genetic studies.
DOI: 10.6084/m9.figshare.9913130.v1
title: Molecular Characterization of 170 New gDNA-SSR Markers for Genetic Diversity in Button Mushroom (<i>Agaricus bisporus</i>)

description: We designed 170 new simple sequence repeat (SSR) markers based on the whole-genome sequence data of button mushroom (<i>Agaricus bisporus</i>), and selected 121 polymorphic markers. A total of 121 polymorphic markers, the average major allele frequency (M<sub>AF</sub>) and the average number of alleles (N<sub>A</sub>) were 0.50 and 5.47, respectively. The average number of genotypes (N<sub>G</sub>), observed heterozygosity (H<sub>O</sub>), expected heterozygosity (H<sub>E</sub>), and polymorphic information content (PIC) were 6.177, 0.227, 0.619, and 0.569, respectively. Pearson’s correlation coefficient showed that M<sub>AF</sub> was negatively correlated with N<sub>G</sub> (−0.683), N<sub>A</sub> (−0.600), H<sub>O</sub> (−0.584), and PIC (−0.941). N<sub>G</sub>, N<sub>A</sub>, H<sub>O,</sub> and PIC were positively correlated with other polymorphic parameters except for M<sub>AF</sub>. UPGMA clustering showed that 26 <i>A. bisporus</i> accessions were classified into 3 groups, and each accession was differentiated. The 121 SSR markers should facilitate the use of molecular markers in button mushroom breeding and genetic studies.