cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/9u1j85
title: Data for Phaeoexplorer publication: Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

description: The Phaeoexplorer project sequenced 60 genomes corresponding to 44 brown algal and sister species. This dataset corresponds to supplementary information relating to the initial annotation of the Phaeoexplorer genomes and multiple analyses of the genome data. The dataset includes additional results of the project, together with accompanying additional figures and tables, (Additional_results.tar.gz), presubmission (v0) versions of the Phaeoexplorer genome annotation (GFF) files (GFF_v0.tar.gz) and genome-wide predicted proteomes as fasta files (Proteomes_v0.tar.gz), de novo transcriptome assemblies for the Phaeoexplorer species (RNA-seq data assembled with Trinity or rnaSPAdes; de-novo-transcriptomes.tar.gz), RepeatMasker analyses of repeat sequences (RepeatMasker.tar.gz), alignment files used to generate a phylogenetic tree for the Phaeoexplorer species (PhylogeneticTree.tar.gz), alignments used to build a densitree specifically for Ectocarpus species (Microevolution_Ectocarpus.tar.gz), an Orthofinder-based analysis of shared orthologues (Orthogroups.tar.gz) together with a Dollo-logic-based analysis of orthogroup gain and loss during evolution (Dollo_analysis.tar.gz), a Phylostratigraphy analysis of brown algal genes (Phylostratigraphy.tar.gz), an analysis of protein functional domain fissions and fusions (CompositeGenes.tar.gz), Interproscan analyses of protein domains (InterProScan.tar.gz), Hectar predictions of protein subcellular localisations (Hectar.tar.gz), eggNOG output providing information about predicted protein functions (eggNOG.tar.gz), RNA-seq-based data on gene expression levels (mRNAexpression.tar.gz), results of a search for genes acquired via horizontal gene transfer (HGT.tar.gz), analyses of intron conservation across genomes (Introns_conservation.tar.gz), an analysis of tandem gene duplications (Tandemely_duplicated_genes.tar.gz), CAFE5 reconstruction of gene family amplifications (CAFE5.tar.gz), comparisons of CDS size with the Ectocarpus reference genome that were used to evaluate gene model completeness (CDS_size.tar.gz), a DESeq2 analysis of differential gene expression between the sporophyte and gametophyte generations of several brown algal species (DEG_LifeCycle.tar.gz), information about orthogroups selected to analyse the effects of morphological complexity and life cycle structure on gene evolution (Genes_selection.tar.gz). Each individual dataset contains a README file explaining its content. Detailed information about the methodology used for each analysis can be found in the Methods section of the manuscript preprint (https://doi.org/10.1101/2024.02.19.579948). The majority of these analyses and datasets can also be accessed via the Phaeoexplorer website (https://phaeoexplorer.sb-roscoff.fr/).
DOI: 10.57745/bfknwv
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : N Fleuves côtiers au sud de la Loire

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique N Fleuves côtiers au sud de la Loire Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/aqno8d
title: Replication Data for : "Dynamic light scattering unveils stochastic degradation in large-pore mesoporous silica nanoparticles"

description: Replication data for the article "Dynamic light scattering unveils stochastic degradation in large-pore mesoporous silica nanoparticles" The article studies the mechanism of hydrolysis of large-pores mesoporous silica nanoparticles. These nanoparticles can be very useful for the encapsulation and the release of biomolecules. Understanding their dissolution is therefore important. DLS techniques, in millimetric and micrometric volumes, are used in this study as a new tool to monitor the diameter and concentration of nanoparticles in the colloids. Unexpectedly, we found out that the diameter of the nanoparticles remained constant throughout the study, whereas the concentration decreased following a mono-exponential decay law. These observation led us to conclude that the nanoparticles stochastically fragilize and completely vanish, whereas intact nanoparticles can be found until the end of the process.
DOI: 10.57745/a0ksmh
title: Residence Time Distribution - kiln 1 - crozets

description: Residence Time Distribution (RTD) experiments conducted with parallelepipedic particles (crozets; 5.5 x 5.7 x 2.0 mm) flowing inside a pilot-scale rotary kiln (10.13 cm in diameter; 1.95 m in length)
DOI: 10.57745/8z0lwx
title: Dataset_2 &gt; Supplemental data associated to "Human milk metabolites modulate gut physiology in an in vitro multicellular model of intestinal epithelium" by Blanchet Sarah, Bostoën Mégane, Romé Veronique, Le Huërou-Luron Isabelle, Le Loir Yves, Even Sergine and Blat Sophie

description: This dataset includes supplemental data associated to "Human milk metabolites modulate gut physiology in an in vitro multicellular model of intestinal epithelium" by Blanchet et al.
DOI: 10.57745/a6rpfo
title: H.annuus.Multi_Cla_Field_LeafFragments

description: RGB images of sunflower fragments collected in the field and bearing symptoms of plant diseases, annoted by classification at the whole image level (attribution to one causal species)
DOI: 10.57745/cpztew
title: NMR-based metabolomics of acerola juice concentrate, dried juice powders and food supplements

description: Development, validation, and use of 1H NMR spectroscopy for evaluating the quality of acerola-based food supplements and quantifying ascorbic acid
DOI: 10.57745/cvn0mi
title: Production routes and properties of various plant powders intended for the manufacture of green products: raw and calculated analytical data

description: This Dataset includes several characterizations of different biomass powders. For each analysis performed on the powders, this dataset includes a table with the raw data (analysis raw), and in cases where multiple observations of the same parameter were made, there is also a calculated table (analysis calc) that includes the average and standard deviation values for the several observations. The data set also includes the requests SPARQL queries used to generate the tables from the online tools SPO2Q. Queries names and table names have the same name, only the extension differs replacing the string ‘tsv’ by ‘sparql’. By example ‘Table 2.1 monosaccharides raw.sparql’ is the name of the query associated with table ‘Table 2.1 monosaccharides raw.tsv’
DOI: 10.57745/ajo9fd
title: Characterization of two significantly different L. salivarius CECT5713 cells in terms of freeze-dried resistance and the external medium at different steps of the manufacturing process to understand mechanisms of resistance to freeze-drying and storage

description: This dataset contains experimental data on an extensive characterization of bacterial cells obtained by two sets of production conditions providing two significantly different strain resistance to the manufacturing process (here called sensitive and resistant). We used such different cell concentrates for identifying markers of cell injury. L. salivarius CECT5713 concentrates produced under the two sets of production conditions were characterized using a multiscale (matrix, cell population, cell membrane and other cell components) and multistep (freezing, freeze-drying, storage) approach. Apart from the production conditions of cell concentrates (culture and protection), the dataset includes i) biological activity (culturability, viability, and storage stability), ii) physical properties of the matrix (glass transition temperature and water activity), iii) membrane properties (fatty acid composition, membrane fluidity, and phospholipid organization by measuring the lipid membrane phase transition), and iv) biochemical composition (Fourier transform infrared microscopy in aqueous environment-FTIR features) following freezing, freeze-drying, and 4 weeks of storage at 37°C.
DOI: 10.57745/ayqbqb
title: Transcriptomic sequence data for the pine processionary moth Thaumetopoea pityocampa and alignments used for the phylogenetic analyses of the cypovirus, the iflavirus and the densovirus identified

description: This dataset corresponds to the fasta file comprising the assembled transcriptome for the pine processionary moth Thaumetopoea pityocampa, and the 3 fasta files containing the alignments used for the phylogenetic analyses of viruses identified from the transcriptome, namely the cypovirus, the iflavirus and the densovirus
DOI: 10.57745/bupqqf
title: Hydrological projections (1985-2100) of the Butiznica DRN (Croatia)

description: Hydrological model outputs at daily time step for the projection simulations (1985-2100) in the Butiznica DRN (Croatia). Simulated discharge, baseflow an state of flow (flowing/dry) is spatially distributed at the reach scale. Other hydroclimatic variables (temperature, precipitation, rainfall, snowfall, potential evapotranspiration, actual evapotranspiration, vegetation interception, snow water equivalent, saturation of the soil layer, saturation of the grounwater layer) are spatially aggregated at the catchment scale. Hydrological projections were produced for 3 SSP scenarios and 5 climate models.
DOI: 10.57745/d1fhk9
title: 20240909_BIOCTANE_INRAE_PUB1.3_V01

description: This dataset contains all the data of the article "Microbial electrolysis cells as a tool to polish short chain -rich dark fermentation effluents for propionate production" of the co authors Jose Antonio Magdalena, María Fernanda Pérez-Bernal, Nicolas Bernet, Eric Trably
DOI: 10.57745/albdav
title: Sows and piglets adjust their use of an outdoor paddock with season and piglet age during the first weeks of life in an organic farm

description: Données de l'article Jahoui et al 2024 dans Applied Animal Behaviour Science https://doi.org/10.1016/j.applanim.2024.106325
DOI: 10.57745/cbhna8
title: Data for the manuscript "Interactive effects of management and temperature anomalies on CO2 fluxes recorded over 18 years in a temperate upland grassland"

description: Datasets related to the results presented in the manuscript "Interactive effects of management and temperature anomalies on CO2 fluxes recorded over 18 years in a temperate upland grassland". The datasets contain daily observations from 2003 to 2021, paired between two grassland management in Laqueuille, Central Massif, France. The time series not complete, that is, only daily data observed in both treatments were used for the analysis.
DOI: 10.57745/dadfrx
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : M Loire

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique M Loire Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/aofgb9
title: Aromatic Cope Rearrangement by Gold(I) Catalysis: NMR data of pure compounds

description: The Aromatic Cope Rearrangement is a highly challenging chemical reaction under thermal conditions, primarily attributed to the loss of aromaticity during the initial [3,3] sigmatropic step of the process. This scarce transformation requires typically high temperatures and engineered 1,5-hexadiene scaffolds, where one double bond is included in an aromatic ring, making it impractical for a straightforward synthesis of new molecules. Employing gold(I) catalysts, the energetic barriers associate to this rearrangement can be drastically decreased allowing to perform, in mild conditions and high yields, the diastereoselective and divergent aromatic Cope rearrangement or the selective dearomatization reaction from various α-allyl-α’-heteroaromatic γ-lactone or malonate derivatives. These data are the primary NMR FID files of all new compounds of this study.
DOI: 10.57745/dvbteq
title: Calorimetric analysis of plastics fragments sampled during full scale composting

description: The morphological evolution of the compostable materials during the composting process was assessed by DSC (DSC1, Mettler Toledo, Switzerland) under N2 (flow rate 50 mL/min) using at minimum 1 mg not cleaned solid in 40 µL aluminum pans. Calibration was carried out with Indium and Zinc standards. The samples were scanned with heat-cool-heat program between – 60 and + 180 °C at 10 °C/min heating or cooling rate. Melting enthalpy (Hm) and glass transition temperature (Tg) shown here were analyzed at the first heating scan. If enough material was available, measurements were done in duplicate. Because of the unknown formulation of the samples, the crystallinity degree could not be determined. The Tg of the PHA samples could not be measured, because the equipment was not sensitive enough.
DOI: 10.57745/cmfncu
title: Rolland et al. 2023, Organic Agriculture (datasets)

description: Two datasets associated with the online version of Rolland et al. (2023) published in Organic Agriculture
DOI: 10.57745/cvirib
title: Zymoseptoria tritici IPO323 genome reannotation

description: Here, we used the reference genome of the major fungal wheat pathogen Zymoseptoria tritici (isolate IPO323) as a case study to develop methods to improve eukaryotic gene prediction.The selection of the best structure among novel and existing gene models was performed according to transcript and protein evidence using InGenAnnot, a novel bioinformatics suite. Overall, 13,414 re-annotated gene models (RGMs) were predicted, including 671 new genes among which 53 encoded effector candidates. Genome annotations are provided in gff3 files and functional annotations in tsv file.
DOI: 10.57745/emmosv
title: CpG methylation calling of the pig genome

description: These BED files contain methylation fractions and coverage depths for each CpG position and strand of the Sus scrofa genome that were performed with data produced by using different sequencing technologies, including Illumina Bisulfite sequencing, Enzymatic Methyl-seq and Oxford Nanopore. The Research Institute for Agriculture, Food and Environment INRAE, with the support of a consortium of private companies and Occitanie region, carried out the SeqOccIn research program.
DOI: 10.57745/cbstp0
title: Wild hop bacterial microbiota (Humulus lupulus L.)

description: Hop (Humulus lupulus L.) is a dioecious climbing plant that is emblematic for the brewing industry because of its specialized metabolites. Many studies have focused on hop metabolism without considering the microbiota associated with hop tissues, although over the past decade, a paradigm shift has redefined plants as holobionts, with complex associations between the plant host and its associated microbial communities. In this study, we investigated the effects of three wild hop genotypes cultivated in two different agricultural soils under controlled conditions on bacterial community composition across different hop compartments (rhizosphere soil, roots, and leaves). Sequencing was performed via Illumina MiSeq with a 2×250 bp paired-end library.
DOI: 10.57745/ealpxm
title: NIRs

description: spectres NIRs correspondance entre lignées et numéro de NIRs
DOI: 10.57745/fbfken
title: Microtomoscan of Clay-Sulfate Rock after Exposure to KCl in the Desiccator for 62 Days, Part 1

description: microtomoscan
DOI: 10.15468/dl.hkxggm
title: Occurrence Download

description: A dataset containing 4784 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tetropium castaneum (Linnaeus, 1758))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 4784 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254668-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mscdk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tropiocolotes wolfgangboehmei Wilms, Shobrak & Wagner, 2010)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057400-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-47927
title: Redemption tidings, vol. 24, nos. 1-26, 2 Jan. - 17 Dec. 1948

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes Tidings from our missionaries in each issue (2-16 Jan., 13 Feb. - 23 Apr., 21 May - 17 Dec. 1948) except vol. 24 nos. 3 & 10. Bound with vol. 25.
DOI: 10.15468/dl.d79acg
title: Occurrence Download

description: A dataset containing 6794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.79411 18.84773,-97.44942 18.84499,-97.45903 19.30092,-97.79274 19.2968,-97.79411 18.84773))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6794 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178741-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgqmf3
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex meridensis (Steyerm.) J.R.Starr",
 "HasCoordinate is true"
 ]
}

 The dataset includes 72 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068515-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfe3qc
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Charadrahyla juanitae (Snyder, 1972))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 145 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057404-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmxphe
title: Occurrence Download

description: A dataset containing 2739 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinidia chinensis Planch."
 ]
}

 The dataset includes 2739 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160908-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dyn3nb
title: Occurrence Download

description: A dataset containing 1673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Hippocamelus bisulcus (Molina, 1782)"
 ]
}

 The dataset includes 1673 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320682-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-48326
title: Redemption tidings, vol. 25, nos. 1-26, 7 Jan. - 23 Dec. 1949

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes Tidings from our missionaries (7 Jan. - 30 Sept. 1940) & We hold the lines (14 Oct. - 23 Dec. 1949) in each issue. Bound with vol. 24.
DOI: 10.15468/dl.fne9hy
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Megastomatohyla mixe (Duellman, 1965))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057442-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3epjp
title: Occurrence Download

description: A dataset containing 717 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrographis paniculata (Burm.fil.) Nees"
 ]
}

 The dataset includes 717 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160904-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.