cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7359482.v1
title: Additional file 17: Figure S9

description: Raw data used for creating Additional file 17: Figure S9 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359485.v1
title: Additional file 19: Figure S10

description: Raw data used for creating Additional file 19: Figure S10 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359476
title: Additional file 13: Figure S8

description: Raw data used for creating Additional file 13: Figure S8 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359479
title: Augmentation of DTH reaction of mycobacterial antigenic cocktail using synthetic mycobacterial 19-kDa lipoprotein as a TLR-stimulant

description: The current study proposed that previously characterized individual antigenic proteins could represent potential replacement for conventional purified protein derivative (PPD) in tuberculosis skin testing when used in cocktails triggered by suitable TLR-stimulants that would provide the missing pro-inflammatory stimulus. Three different cocktails of previously selected antigens, including C1 (ESAT-6/CPF-10/MPB-83); C2 (ESAT-6/MPB-64/MPB-83); and C3 (CPF-10/MPB-64/MPB-83), were evaluated <i>in vitro</i> using lymphocytic proliferation and IFN-γ production assays, as well as mRNA and protein expression levels of TNF-α, IL-12p40, and IL-2 as pro-inflammatory molecules. C1 showed the highest significant induction of pro-inflammatory molecules as compared to other cocktails, yet still significantly lower than that induced by conventional PPD. Interestingly, inclusion of the synthetic <i>Mycobacterium tuberculosis</i> 19-kDa lipoprotein (Pam3Cys-SSNKSTTGSGETTTA) as a TLR-stimulant resulted in obvious augmentation of C1-induced pro-inflammatory molecules to levels comparable to that of PPD. In addition, skin testing using sensitized guinea pig model revealed comparable significant reaction to that of conventional PPD. ESAT-6/CPF-10/MPB-83 cocktail is suggested as a potential alternative skin-testing reagent when used in combination with the <i>M. tuberculosis</i> 19-kDa lipoprotein as a TLR-stimulant.
DOI: 10.6084/m9.figshare.7359479.v1
title: Augmentation of DTH reaction of mycobacterial antigenic cocktail using synthetic mycobacterial 19-kDa lipoprotein as a TLR-stimulant

description: The current study proposed that previously characterized individual antigenic proteins could represent potential replacement for conventional purified protein derivative (PPD) in tuberculosis skin testing when used in cocktails triggered by suitable TLR-stimulants that would provide the missing pro-inflammatory stimulus. Three different cocktails of previously selected antigens, including C1 (ESAT-6/CPF-10/MPB-83); C2 (ESAT-6/MPB-64/MPB-83); and C3 (CPF-10/MPB-64/MPB-83), were evaluated <i>in vitro</i> using lymphocytic proliferation and IFN-γ production assays, as well as mRNA and protein expression levels of TNF-α, IL-12p40, and IL-2 as pro-inflammatory molecules. C1 showed the highest significant induction of pro-inflammatory molecules as compared to other cocktails, yet still significantly lower than that induced by conventional PPD. Interestingly, inclusion of the synthetic <i>Mycobacterium tuberculosis</i> 19-kDa lipoprotein (Pam3Cys-SSNKSTTGSGETTTA) as a TLR-stimulant resulted in obvious augmentation of C1-induced pro-inflammatory molecules to levels comparable to that of PPD. In addition, skin testing using sensitized guinea pig model revealed comparable significant reaction to that of conventional PPD. ESAT-6/CPF-10/MPB-83 cocktail is suggested as a potential alternative skin-testing reagent when used in combination with the <i>M. tuberculosis</i> 19-kDa lipoprotein as a TLR-stimulant.
DOI: 10.7284/106412
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-29 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359458
title: Additional file 11: Figure S7

description: Raw data used for creating Additional file 11: Figure S7 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359476.v1
title: Additional file 13: Figure S8

description: Raw data used for creating Additional file 13: Figure S8 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359446
title: Additional file 8: Figure S5

description: Raw data used for creating Additional file 8: Figure S5 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359458.v1
title: Additional file 11: Figure S7

description: Raw data used for creating Additional file 11: Figure S7 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359446.v1
title: Additional file 8: Figure S5

description: Raw data used for creating Additional file 8: Figure S5 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359401
title: D4_screen_table.csv.gz

description: Comma separated values with zincid, smiles, dock score (kcal/mol), heavy atom count for a docking calculation against the dopamine D4 receptor. To be published in nature: Lyu et. al.<br>
DOI: 10.6084/m9.figshare.7359434
title: Additional file 5: Figure S3

description: Raw data used for creating Additional file 5: Figure S3 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359434.v1
title: Additional file 5: Figure S3

description: Raw data used for creating Additional file 5: Figure S3 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.7284/116145
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-29 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106857
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE12-30 using a RDI OS-75 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359401.v1
title: D4_screen_table.csv.gz

description: Comma separated values with zincid, smiles, dock score (kcal/mol), heavy atom count for a docking calculation against the dopamine D4 receptor. To be published in nature: Lyu et. al.<br>
DOI: 10.6084/m9.figshare.7359401.v2
title: D4_screen_table.csv.gz

description: Comma separated values with zincid, smiles, dock score (kcal/mol), heavy atom count for a docking calculation against the dopamine D4 receptor. To be published in nature: Lyu et. al.<br>
DOI: 10.7284/111926
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE12-30 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106413
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-30 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116147
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-30 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359290
title: What the ca. 1.83 Ga gedrite-cordierite schists in the crystalline basement of Lithuania tell us about the late Palaeoproterozoic accretion of the East European Craton

description: In the western East European Craton (EEC), southern Lithuania, a suite of fine-grained, thinly bedded rocks of unusual composition has been shown to have originally comprised intermediate and felsic volcanic rocks. They extruded at ca. 1.83 Ga and were hydrothermally altered prior to metamorphism, which converted them into garnet-, gedrite-, anthophyllite-, staurolite- and cordierite-bearing schists. After the rocks have experienced a 630°C and 7 kbar metamorphism, they were uplifted to 15 km (5 kbar) probably at ca. 1.73 Ga. They were reheated to 640°C at ca. 1.50 Ga (monazite age). The monazite age of ca. 1.50 Ga is coeval with the emplacement of the neighboring 1.50 Ga Anorthosite-Mangerite-Charnockite-Granite (AMCG) Mazury complex. The ca. 1.83 Ga volcanic suites in Lithuania and northern Poland, together with the Oskarshamn-Jönköping belt (OJB) in south-central Sweden, may belong to the same chain of volcanic island arcs, and thus provide information on the evolution of the entire western EEC. The ca. 1.50 Ga metamorphic reworking and the replacement of the Mazury AMCG suite may have been triggered by the Danopolonian orogeny further west and, at a larger scale, accretion of the continental margin of Columbia.
DOI: 10.7284/116546
title: Meteorological Station data collected during research cruise PE12-30 using a CWS Magellan instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359272
title: Mobile genetic elements on the ST30 strain MRSA252

description: This file contains the genomic coordinates of mobile genetic elements on the clonal complex 30 Staphylococcus aureus reference genome (Genbank accession number BX571856).
DOI: 10.6084/m9.figshare.7359290.v1
title: What the ca. 1.83 Ga gedrite-cordierite schists in the crystalline basement of Lithuania tell us about the late Palaeoproterozoic accretion of the East European Craton

description: In the western East European Craton (EEC), southern Lithuania, a suite of fine-grained, thinly bedded rocks of unusual composition has been shown to have originally comprised intermediate and felsic volcanic rocks. They extruded at ca. 1.83 Ga and were hydrothermally altered prior to metamorphism, which converted them into garnet-, gedrite-, anthophyllite-, staurolite- and cordierite-bearing schists. After the rocks have experienced a 630°C and 7 kbar metamorphism, they were uplifted to 15 km (5 kbar) probably at ca. 1.73 Ga. They were reheated to 640°C at ca. 1.50 Ga (monazite age). The monazite age of ca. 1.50 Ga is coeval with the emplacement of the neighboring 1.50 Ga Anorthosite-Mangerite-Charnockite-Granite (AMCG) Mazury complex. The ca. 1.83 Ga volcanic suites in Lithuania and northern Poland, together with the Oskarshamn-Jönköping belt (OJB) in south-central Sweden, may belong to the same chain of volcanic island arcs, and thus provide information on the evolution of the entire western EEC. The ca. 1.50 Ga metamorphic reworking and the replacement of the Mazury AMCG suite may have been triggered by the Danopolonian orogeny further west and, at a larger scale, accretion of the continental margin of Columbia.
DOI: 10.6084/m9.figshare.7359254
title: Figure 5

description: Raw data used for creating Figure 5 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.7284/109132
title: Transmissometer data collected during research cruise PE12-30 using a WET Labs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359254.v1
title: Figure 5

description: Raw data used for creating Figure 5 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359209
title: StJohn et al dataset for: Value diversity and conservation conflict: Lessons from the management of red grouse and hen harriers in England. People & Nature

description: Information (read first file) and dataset to accompany St. John, F.A.V., Steadman, J., Austen, G., and Redpath, S.M. <i>Value diversity and conservation conflict: Lessons from the management of red grouse and hen harriers in England </i>published in People and Nature
DOI: 10.6084/m9.figshare.7359272.v1
title: Mobile genetic elements on the ST30 strain MRSA252

description: This file contains the genomic coordinates of mobile genetic elements on the clonal complex 33 Staphylococcus aureus reference genome (Genbank accession number BX571856).
DOI: 10.6084/m9.figshare.7359272.v3
title: Mobile genetic elements on the ST30 strain MRSA252

description: This file contains the genomic coordinates of mobile genetic elements on the clonal complex 30 Staphylococcus aureus reference genome (Genbank accession number BX571856).
DOI: 10.7284/109129
title: TSG (Thermosalinograph) data collected during research cruise PE12-30 using a Sea-Bird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359209.v1
title: StJohn et al dataset for: Value diversity and conservation conflict: Lessons from the management of red grouse and hen harriers in England. People & Nature

description: Information (read first file) and dataset to accompany St. John, F.A.V., Steadman, J., Austen, G., and Redpath, S.M. <i>Value diversity and conservation conflict: Lessons from the management of red grouse and hen harriers in England </i>published in People and Nature
DOI: 10.6084/m9.figshare.7359272.v2
title: Mobile genetic elements on the ST30 strain MRSA252

description: This file contains the genomic coordinates of mobile genetic elements on the clonal complex 33 Staphylococcus aureus reference genome (Genbank accession number BX571856).
DOI: 10.6084/m9.figshare.7359197
title: Microcephaly and potential exposure data in Brazil 2015-2017

description: Data used in the paper: "The association between Zika and microcephaly: an observational analysis of over 4 million births in Brazil 2015-2017"<br>Presents summaries of various variables including microcephaly and other birth defects at the municipality level for each week January 2015- May 2017 in the main file "MC_data_public_release". The weekly number of confirmed and suspected (file abbreviation "con" and "sus" respectively) Zika, dengue and chikungunya cases for each municipality are also provided.<br><br><br>
DOI: 10.7284/106859
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE12-31 using a RDI OS-75 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359188
title: Dataset (Ganesh et al).xlsx

description: This is dataset used for Publication "<b>Epidemiology of urinary tract infection and antimicrobial resistance in the pediatric hospital in Nepal</b>" and contains data sheet of AMR of isolated uropathogens at microbiology laboratory in Siddhi Memorial Hospital, Bhaktapur, Nepal.
DOI: 10.7284/120565
title: Fluorometer data collected during research cruise PE12-31 using a Turner 10-AU instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106414
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-31 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359092
title: Investigating the Lapsing of Life Insurance Policies in the Nigerian Insurance Industry.xlsb

description: Data set on policyholders of a Nigerian Life Insurance Company
DOI: 10.7284/116148
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-31 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359086
title: xcpEngine tutorial data

description: An anonymized subject run through fmriprep that is ready to be processed by xcpEngine.<br>
DOI: 10.6084/m9.figshare.7359065
title: Custom Code for Kuderna, Lizano et al. (2018)

description: Custom code snippet used for gene annotation.
DOI: 10.7284/125844
title: Gyrocompass data collected during research cruise PE12-31 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7359065.v1
title: Custom Code for Kuderna, Lizano et al. (2018)

description: Custom code snippet used for gene annotation.
DOI: 10.7284/116547
title: Meteorological Station data collected during research cruise PE12-31 using a CWS Magellan instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358996
title: Figure 4

description: Raw data used for creating Figure 4 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7359011
title: A numerical tool to evaluate highly focused holographic optical needles

description: A numerical tool to evaluate highly focused holographic optical needles.<br>
DOI: 10.7284/109135
title: Transmissometer data collected during research cruise PE12-31 using a WET Labs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358996.v1
title: Figure 3

description: Raw data used for creating Figure 3 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7358996.v2
title: Figure 4

description: Raw data used for creating Figure 4 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7358987
title: Original data MANAGER1

description: Original data for MANAGER1 paper
DOI: 10.7284/106858
title: TSG (Thermosalinograph) data collected during research cruise PE12-31 using a Sea-Bird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358987.v1
title: Original data MANAGER1

description: Original data for MANAGER1 paper
DOI: 10.7284/120566
title: Fluorometer data collected during research cruise PE12-32 using a Turner 10-AU instrument system onboard the platform RV Pelican
DOI: 10.7284/106415
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-32 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116149
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-32 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111930
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE12-33 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358885
title: ATACseq_Matrix

description: The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) is a fundamental epigenomics approach and has been widely used in profiling the chromatin accessibility dynamics in multiple species. A comprehensive reference of ATAC-seq datasets for mammalian tissues is important for the understanding of regulatory specificity and developmental abnormality caused by genetic or environmental alterations. Here, we report a mouse ATAC-seq atlas by producing a total of 66 ATAC-seq profiles from 20 primary tissues of both male and female mice. The ATAC-seq read enrichment, fragment size distribution, and reproducibility between replicates demonstrated the high quality of the full dataset. We identified a total of 296,574 accessible elements, of which 26,916 showed tissue-specific accessibility. Further, we identified key transcription factors (TFs) specific to distinct tissues and found that the enrichment of each TF reflects the developmental similarities across tissues. In summary, our study provides an important resource on the mouse epigenome and will be of great importance to various scientific disciplines such as development, cell reprogramming, and genetic disease.
DOI: 10.7284/120567
title: Fluorometer data collected during research cruise PE12-33 using a Turner 10-AU instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/106416
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-33 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116150
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE12-33 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358852
title: DEGs for each sample

description: degs for each sample
DOI: 10.6084/m9.figshare.7358852.v1
title: DEGs for each sample

description: degs for each sample
DOI: 10.6084/m9.figshare.7358837
title: Figure 3

description: Raw data used for creating Figure 3 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7358840
title: Pathways from DMRs #2

description: pathways affected by dmrs
DOI: 10.6084/m9.figshare.7358840.v1
title: Pathways from DMRs #2

description: pathways affected by dmrs
DOI: 10.7284/116549
title: Meteorological Station data collected during research cruise PE12-33 using a CWS Magellan instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358837.v1
title: Figure 3

description: Raw data used for creating Figure 3 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7358834
title: Pathways from DMRs #1

description: pathways affected by dmrs
DOI: 10.7284/109142
title: Transmissometer data collected during research cruise PE12-33 using a WET Labs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition