cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18095813.v1
title: Supplementary Material for: Rapid Prototypable Biomimetic Peristalsis Bioreactor Capable of Concurrent Shear and Multi-axial Strain

description: Peristalsis is a nuanced mechanical stimulus comprised of multi-axial strain (radial and axial strain) and shear stress. Forces associated with peristalsis regulate diverse biological functions including digestion, reproductive function, and urine dynamics. Given the central role peristalsis plays in physiology and pathophysiology, we were motivated to design a bioreactor capable of holistically mimicking peristalsis. We engineered a novel rotating screw-drive based design combined with a peristaltic pump, in order to deliver multiaxial strain and concurrent shear stress to a biocompatible polydimethylsiloxane (PDMS) membrane “wall”. Radial indentation and rotation of the screw drive against the wall demonstrated multi-axial strain evaluated via finite element modeling. Experimental measurements of strain using piezoelectric strain resistors were in close alignment of model-predicted values (15.9 ± 4.2% vs. 15.2% predicted). Modeling of shear stress on the ‘wall’ indicated a uniform velocity profile and a moderate shear stress of 0.4 Pa. Human mesenchymal stem cells (hMSCs) seeded on the PDMS ‘wall’ and stimulated with peristalsis demonstrated dramatic changes in actin filament alignment, proliferation, and nuclear morphology compared to static controls, perfusion or strain, indicating that hMSCs sensed and responded to peristalsis uniquely. Lastly, significant differences were observed in gene expression patterns of Calponin, Caldesmon, Smooth Muscle Actin, and Transgelin, corroborating the propensity of hMSCs toward myogenic differentiation in response to peristalsis. Collectively, our data suggests that the peristalsis bioreactor is capable of generating concurrent multi-axial strain and shear stress on a ‘wall’. hMSCs experience peristalsis differently than perfusion or strain, resulting in changes in proliferation, actin fiber organization, smooth muscle actin expression, and genetic markers of differentiation. The peristalsis bioreactor device has broad utility in the study of development and disease in several organ systems.
DOI: 10.6084/m9.figshare.28747559.v1
title: Chatbot Paper Data

description: This study explores how specific traits of chatbots—such as warmth, competence, and anthropomorphism—affect consumers’ willingness to forgive service failures, with a particular focus on how the severity of the failure moderates this relationship. As the use of conversational AI continues to expand in service environments, understanding how chatbot characteristics shape consumer reactions provides critical insights for both researchers and practitioners in the fields of information technology, management, and human-computer interaction.
DOI: 10.6084/m9.figshare.5129731.v1
title: Supplementary Material for: Acute Pericarditis-Associated Hospitalization in the USA: A Nationwide Analysis, 2003-2012

description: <b><i>Background and Objectives:</i></b> Epidemiologic data on hospitalizations for acute pericarditis are scarce. We sought to study the trends in these hospitalizations and outcomes in the USA over a 10-year period. <b><i>Methods:</i></b> We used the 2003-2012 Nationwide Inpatient Sample database to identify admissions with a primary diagnosis of acute pericarditis. Outcomes included hospitalization rate, case fatality rate (CFR), length of stay (LOS), hospital charges, complications and diagnostic and therapeutic procedures. <b><i>Results:</i></b> We observed an estimated 135,710 hospitalizations for acute pericarditis among patients ≥16 years during the study period (mean age 53.5 ± 18.5 years; 40.5% women). The incidence of acute pericarditis hospitalizations was significantly higher for men than for women [incidence rate ratio (IRR) 1.56; 95% confidence interval (CI) 1.54-1.58; p &lt; 0.001]; it decreased from 66 to 54 per million person-years (p &lt; 0.001). CFR and LOS declined significantly during the study period (CFR: 2.2% in 2003 to 1.4% in 2012; LOS: 4.8 days in 2003 to 4.1 days in 2012; p &lt; 0.001 for both). The average inflation-adjusted health-care charge increased from USD 31,242 to 38,947 (p &lt; 0.001). <b><i>Conclusion:</i></b> The hospitalization rate, CFR and LOS associated with acute pericarditis have declined significantly in the US population. Average charges for acute pericarditis hospitalization have increased.
DOI: 10.6084/m9.figshare.19550833.v1
title: nudge_and_bias_in_subjective_ratings.xlsx

description: Subjective ratings have been central to the evaluation of icon characteristics. This study sought to examine the extent to which ratings may become biased when participants are presented with novel icons which have a limited range of variability in the icon characteristics being rated. Six key icon characteristics were rated which were visual (visual complexity, appeal), affective (valence, feelings) and semantic (concreteness, semantic distance). The range of icon values presented for rating was systematically manipulated in the expectation that limited variation in the to-be-rated stimulus characteristic may change the participants’ choice architecture, creating systematic biases in the ratings obtained.
DOI: 10.23641/asha.23548911.v1
title: Brazilian Portuguese Language Screening Test (de Lima Ramos et al., 2023)

description: <b>Background:</b> There is a lack of standardized assessment tools for poststroke aphasia in Brazil, particularly bedside screenings for early identification of patients with suspected language disorders. The Language Screening Test (LAST) is a valid and reliable method for screening hospitalized patients following a stroke. This tool was first developed in French and then translated and validated in other languages.<b>Purpose:</b> This study aimed to translate, culturally adapt, and validate the LAST into Brazilian Portuguese.<b>Method:</b> Following a systematic, multistep approach to translation and cultural adaptation of language instruments, this study developed the two parallel versions of the Brazilian Portuguese LAST (pLAST) Versions A and B. The final versions were applied to 70 healthy and 30 poststroke adults across age and educational levels. Subtests of the Boston Diagnostic Aphasia Examination (BDAE) were used to assess the external validity of the pLAST.<b>Results:</b> Findings showed that the two versions (A and B) of the pLAST were equivalent (intraclass correlation coefficient = .91; <i>p</i> &lt; .001). No floor or ceiling effects were observed, and internal validity was excellent (Cronbach’s α = .85). Moreover, its external validity against the BDAE was moderate to strong. Test sensitivity and specificity were 0.88 and 1, respectively, and accuracy was 0.96.<b>Conclusion:</b> The Brazilian Portuguese version of the LAST is a valid, simple, easy, and rapid test to screen poststroke aphasia in hospital settings.<b>Supplemental Material S1.</b> Distribution of participants by age and educational level.<b>Supplemental Material S2.</b> Age and educational level effect on pLAST scores in healthy participants.<b>Supplemental Material S3.</b> Age and educational level effect on pLAST scores in poststroke participants.de Lima Ramos, R., Bahia, M. M., Flamand-Roze, C., & Yu Shon Chun, R. (2023). Brazilian Portuguese adaptation and validation of the Language Screening Test for poststroke patients. <i>Journal of Speech, Language, and Hearing Research</i>,<i> 66</i>(7), 2296–2315. https://doi.org/10.1044/2023_JSLHR-22-00611
DOI: 10.6084/m9.figshare.177734.v2
title: Table S1. Orthologs clusters.

description: Orthologs clusters identification among SIs from V. cholerae and V. mimicus genomes. These clusters were identified using the pangenome analysis pipeline (10), strains without genes in the cluster are marked with "-".
DOI: 10.6084/m9.figshare.21437970.v1
title: Replication Data for "Prevalence of Third-Party Tracking on Abortion Clinic Web Pages"

description: In this cross-sectional study, we extracted the uniform resource locator (URL) of each National Abortion Federation member facility on May 6, 2022. We visited each unique URL using webXray (Timothy Libert), which detects third-party tracking. For each web page, we recorded data transfers to third-party domains. Transfers typically include a user’s IP (internet protocol) address and the web page being visited. We also recorded the presence of third-party cookies, data stored on a user’s computer that can facilitate tracking across multiple websites.
DOI: 10.6084/m9.figshare.9201770.v1
title: DepMap 19Q3 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 625 cell lines, the RNAseq data includes 1,210 cell lines, and the copy number data includes 1,657 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.
DOI: 10.17632/g6bkyvmn3s
title: Supplementary materials of the article: "Boosting GPT-4V’s Accuracy in Dermoscopic Classification with Few-Shot Learning", Wang et al

description: Supplementary materials of the article: "Boosting GPT-4V’s Accuracy in Dermoscopic Classification with Few-Shot Learning", Wang et al
DOI: 10.6084/m9.figshare.25398001.v1
title: Data from multi-stage relaxation test and distributed optical fiber sensing

description: Understanding the transient deformation response of brittle rocks during stress relaxation helps to explain the underlying mechanism of ground movement in the post-event phase. A multi-stage relaxation test was performed to investigate time-dependent deformation and transient strain rate deceleration. Distributed fiber optic sensing was applied to a cylindrical granodiorite sample, using standard single-mode fibers helically wrapped around the sample for precise strain measurements.
DOI: 10.6084/m9.figshare.23500671.v1
title: Supplementary Material for: Pursuing the Real Vancomycin Clearance during Continuous Renal Replacement Therapy in Intensive Care Unit Patients: Is There Adequate Target Attainment?

description: <b><i>Introduction:</i></b> Vancomycin is used in intensive care unit (ICU) patients for the treatment of infections caused by gram-positive bacteria. The vancomycin pharmacokinetic/pharmacodynamic index is a ratio of the area under the concentration to the minimum inhibitory concentration ≥400–600 h*mg/L. This target can generally be achieved by a plasma concentration of 20–25 mg/L. Together with the pathophysiological alterations and pharmacokinetic variability associated with critical illness, the use of continuous renal replacement therapy (CRRT) may complicate the attainment of adequate vancomycin concentrations. The primary objective was the prevalence of attainment of vancomycin concentrations 20–25 mg/L after 24 h in adult ICU patients receiving CRRT. Secondary outcomes were to evaluate target attainment at days 2 and 3 and to calculate vancomycin clearance (CL) by CRRT and residual diuresis. <b><i>Methods:</i></b> We performed a prospective observational study in adult ICU patients on CRRT, which received at least 24 h continuous infusion of vancomycin. Between May 2020 and February 2021, daily vancomycin residual blood gas and dialysate samples were collected from 20 patients, every 6 h and if possible vancomycin urine samples. Vancomycin was analysed with an immunoassay method. The CL by CRRT was calculated by a different approach correcting for the downtime and providing insight into the degree of filter patency. <b><i>Results:</i></b> The proportion of patients with vancomycin concentrations &lt;20 mg/L was 50% 24 h after starting vancomycin (<i>n</i> = 10). No differences were observed in patient characteristics. The target vancomycin concentration 20–25 mg/L was only achieved in 30% of the patients. On days 2 and 3, despite the use of TDM and albeit in lower percentages, sub- and supratherapeutic levels were still observed. Taking downtime and filter patency into account resulted in lower vancomycin CL. <b><i>Conclusions:</i></b> 50% of the studied ICU patients on CRRT showed subtherapeutic vancomycin concentrations 24 h after starting therapy. The results reveal that optimization of vancomycin dosage during CRRT therapy is needed.
DOI: 10.17632/6x7jrn5fhm
title: CMC Thermal Conductivity

description: This is the repository for the Materials and Design paper titled "Reduced-order Models for Microstructure-Sensitive Effective Thermal Conductivity of Woven Ceramic Matrix Composites with Residual Porosity" Files Included: -Homogenized effective thermal conductivity for all microstructures (3125) in k11.mat, k22.mat, and k33.mat -The input principal component scores for all microstructures (3125) can be found in pcs.mat Statistical quantification of microstructures can be accomplished through the PyMKS github page: https://github.com/materialsinnovation/pymks. Further information regarding the GPR model building process can be found in the Mathworks page: https://www.mathworks.com/help/stats/fitrgp.html
DOI: 10.17632/5hx73bpxxy
title: 质谱分析

description: 广西医科大学第一附属医院/郭振亚博士论文/质谱分析报告
DOI: 10.6084/m9.figshare.20383896.v1
title: Violence Against Women Text Classification

description: These are the data used for the development of the investigation. <br> This file was extracted from our mongoDB database. The data set contains real news of violence against women, which were organized with their date, the title and the body of the news.
DOI: 10.6084/m9.figshare.28822928.v1
title: Reconstruct_YRB_TWSA_Daily.mat

description: 《A Novel GRACE-downscaled Deep Learning Framework for Detecting the 2020 Daily Floods in the Yangtze River Basin》result
DOI: 10.17632/shfnbp8fbp
title: Data Historis Permintaan, Stok, Frekuensi Input, dan Frekuensi Output

description: Data ini berisikan data historis permintaan, stok, frekuensi input, dan frekuesni output dari toko furniture x
DOI: 10.6084/m9.figshare.2062068.v2
title: Health Research Council of New Zealand Funding 2006-2013 (Open).xlsx

description: This represents a list of all awarded grants as shown on Health Research Council New Zealand's website with relevant information (i.e. award type, amount, duration, investigator, etc.) between 2006 and 2013 inclusive.
DOI: 10.6084/m9.figshare.18319361.v1
title: Lipidomics of N-ret-PE quantification

description: Raw MS data for N-ret-PE quantification<br>
DOI: 10.6084/m9.figshare.7849463.v1
title: Leptospirosis Malaria Data.xlsx

description: Leptospirosis and Malaria Co-Infections
DOI: 10.17632/ns5w98cz38
title: Exploring the key resources required for AI implementation in CRM and its impact on CRM performance

description: This is the questionnaire data and also the dataset of the questionnaire results “AI-based CRM Performance”.
DOI: 10.15468/dl.au244m
title: Occurrence Download

description: A dataset containing 8922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Phragmatobia fuliginosa (Linnaeus, 1758)"
 ]
}

 The dataset includes 8922 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009418-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21433599.v1
title: Metagenome Assmbled Genomes recovered from the tropical peatlands in the Peruvian Amazon

description: The Pastaza-Marañón Foreland Basin (PMFB) holds the most extensive tropical peatland area in South America. PMFB peatlands store 7.07 Gt of organic carbon while releasing 31.6 – 41.1 Tg methane year–1. However, little is understood about how the microbial communities regulate greenhouse gas (GHG) fluxes from tropical peatlands. Here, we studied the metagenomes of three geochemically distinct peatlands spanning minerotrophic, mixed, and ombrotrophic nutrient gradients. we reconstructed 519 metagenome assembled genomes spanning 28 phyla. This folder contains high quality to medium quality metagenome assembled genomes that were used in our annalysis that is published at TBD.
DOI: 10.6084/m9.figshare.25036613.v1
title: Brasenia_schreberi-compleasm_output_dir_embryophyta_summary

description: Draft genome of Brasenia schreberi, a worldwide distributed and endangered aquatic plant
DOI: 10.6084/m9.figshare.11414028.v1
title: CardenasEtAl_GRL2020_SupplementaryData.xlsx

description: <b>Supporting Information for</b> Submarine groundwater and vent discharge in a volcanic area associated with coastal acidification M. Bayani Cardenas<sup>1</sup>*, Raymond S. Rodolfo<sup>2,3</sup>, Mark R. Lapus<sup>2</sup>, Hillel B. Cabria<sup>2</sup>, Jose Fullon<sup>4</sup>, Gordos Gojunco<sup>5</sup>, Daniel O. Breecker<sup>1</sup>, Danica M. Cantarero<sup>6</sup>, Jaivime Evaristo<sup>7</sup>, Fernando P. Siringan<sup>6</sup>, and Tongwei Zhang<sup>8</sup> <sup>1</sup> Dept. of Geological Sciences, The University of Texas at Austin, Austin, Texas USA<br> <sup>2</sup> Agricultural Sustainability Initiatives for Nature, Inc., Quezon City, PHILIPPINES <sup>3</sup> Dept. of Environmental Science, Ateneo de Manila University, Quezon City, PHILIPPINES <br> <sup>4</sup> Planet Dive Resort, Mabini, Batangas, PHILIPPINES<br> <sup>5</sup> Scuba Academy Manila, Makati, PHILIPPINES<br> <sup>6</sup> Marine Science Inst., University of the Philippines-Diliman, Quezon City, PHILIPPINES <sup>7</sup> Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, THE NETHERLANDS<br> <sup>8</sup> Bureau of Economic Geology, The University of Texas at Austin, Austin, Texas, USA *<sup> </sup>corresponding author: cardenas@jsg.utexas.edu<b></b><br><b>Supplementary Table 1</b>. This table shows the chemistry of water samples collected throughout the site. The samples correspond to those presented in Figure 3. Locations where the samples were collected are shown in Figure S2 or described in the text. See Excel spreadsheet. <b>Supplementary Table 2</b>. This table shows the results of radon-222 measurements along the coast of Calumpan Peninsula done at three different times. The measurements were done using RAD7 instruments connected to the RAD-AQUA gas equilibration chamber. The data covers the results shown in Figures 1B and 1C. See Excel spreadsheet. <b>Supplementary Table 3</b>. This table shows the results of surface seawater pCO2 measurements. The measurements were done with an infrared gas analyzer (Pro-Oceanus Pro-CV). The data in the table corresponds to what is presented in Figure 1E. See Excel spreadsheet. <b>Supplementary Table 4</b>. This table shows the results of in-situ bottom seawater pCO2 measurements. The measurements were done with an infrared gas analyzer (Pro-Oceanus Pro-CV). The results are broken into segments and the arclength along each segment is also calculated. This data covers those plotted in Figures 1F and 2H. See Excel spreadsheet.
DOI: 10.6084/m9.figshare.12115305.v1
title: Methods for analyzing, comparing and correcting gene families

description: Yeast (YGOB) and legume gene families used for testing methods for detecting and correcting under-clustered and over-clustered gene families<br><b>ygob_proteomes.tar.gz</b>: Complete yeast proteomes from YGOB database<br><br><b>ygob_family_fasta.tar.gz</b>: Complete yeast families from the YGOB database<br><b>ygob_family_fasta_delete.tar.gz</b>: Intentionally under-clustered yeast families with missing 20% sequences<br> <b>ygob_family_fasta_insert_delete.tar.gz</b>: <br>Intentionally under-clustered yeast families with missing 20% sequences and containing 20% of wrong sequences<br><b>orthofinder_ygob_family_fasta.tar.gz</b>: Yeast families built using OrthoFinder<br><br><b>legume_proteomes.tar.gz</b>: Complete legume proteomes used for testing the under-clustering detection and correction method<br><b>legume_outgroup_proteomes.tar.gz</b>: Complete legume outgroup proteomes used for detection of over-clustering in legume families built using OrthoFinder<br><b>orthofinder_legumes_family_fasta.tar.gz</b>: Legume families built using OrthoFinder<br><br>
DOI: 10.6084/m9.figshare.15081648.v1
title: Supplementary Material for: Workflow Times and Outcome of Endovascular Therapy in Stroke Patients with Initial MRI or CT

description: <b><i>Introduction:</i></b> Treatment of patients with acute large vessel occlusion (LVO) stroke is highly time dependent. MRI and CT are both used as primary neuroimaging modalities in these patients, which may be associated with differences in workflow times of endovascular therapy (ET), thus potentially affecting clinical outcome. We here aimed to compare workflow times and clinical outcome in a large cohort of patients initially examined by MRI or CT. <b><i>Methods:</i></b> We analyzed patients who underwent ET between 2015 and 2019 and were enrolled into the prospective multicenter German Stroke Registry-Endovascular Therapy (GSR-ET). Patients who had an MRI prior to ET were compared to patients with a pretreatment CT regarding baseline data, in-hospital workflow times, and clinical outcome. <b><i>Results:</i></b> Three hundred seventy out of 4,638 patients were examined with an initial MRI (8.0%). Compared to patients with an initial CT, MRI patients had a longer median time from hospital admission to imaging acquisition (23 vs. 14 min). All consecutive workflow times did not significantly differ between both groups after adjustment for confounders. Moreover, the clinical outcome did not differ between MRI and CT patients after adjustment for confounders. <b><i>Conclusion:</i></b> In LVO stroke patients undergoing ET, pretreatment imaging with MRI instead of CT leads to a delay of imaging acquisition after hospital admission without having a measurable impact on consecutive workflow steps and clinical outcome.
DOI: 10.6084/m9.figshare.3528449.v1
title: Appendix A. A figure showing meta-analysis results calculated using the log response ratio effect size metric and a single randomly selected interaction per predator–prey species pair per published source.

description: A figure showing meta-analysis results calculated using the log response ratio effect size metric and a single randomly selected interaction per predator–prey species pair per published source.