cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13316157
title: Journal of Hymenoptera Research: Journal of Hymenoptera Research- old

description: The Journal of Hymenoptera Research is a peer-reviewed, open-access, rapid online journal launched to accelerate research on all aspects of Hymenoptera, including biology, behavior, ecology, systematics, taxonomy, genetics, and morphology. All published papers can be freely copied, downloaded, printed and distributed at no charge for the reader. Authors are thus encouraged to post the pdf files of published papers on their homepages or elsewhere to expedite distribution. There is no charge for color. ISSN 1314-2607 (online) | ISSN 1070-9428 (print)
DOI: 10.5281/zenodo.13316110
title: Subterranean Biology

description: Subterranean Biology is an international journal published by Pensoft on behalf of the International Society for Subterranean Biology [SIBIOS] for the publication of original and significant contributions on all aspects of subterranean life. All published papers can be freely copied, downloaded, printed and distributed at no charge for the reader. Authors are thus encouraged to post the pdf files of published papers on their homepages or elsewhere to expedite distribution. There is no charge for color.
DOI: 10.5281/zenodo.13316111
title: Subterranean Biology

description: Subterranean Biology is an international journal published by Pensoft on behalf of the International Society for Subterranean Biology [SIBIOS] for the publication of original and significant contributions on all aspects of subterranean life. All published papers can be freely copied, downloaded, printed and distributed at no charge for the reader. Authors are thus encouraged to post the pdf files of published papers on their homepages or elsewhere to expedite distribution. There is no charge for color.
DOI: 10.5281/zenodo.13312602
title: Record et al copepodid diapause: Record et al

description: Record NR, Ji R, Maps F, Varpe Ø (in prep) Computing the biogeography of copepodid diapause.
DOI: 10.5281/zenodo.13312603
title: Record et al copepodid diapause: Record et al

description: Record NR, Ji R, Maps F, Varpe Ø (in prep) Computing the biogeography of copepodid diapause.
DOI: 10.5281/zenodo.13320178
title: test files: temp

description: For testing of harvesting codeTreatmentBank with Animalia manually mapped to Metazoa
DOI: 10.5281/zenodo.13320179
title: test files: temp

description: For testing of harvesting codeTreatmentBank with Animalia manually mapped to Metazoa
DOI: 10.34740/kaggle/dsv/10002524
title: Balochi Language to English Translation Dataset
DOI: 10.5281/zenodo.13322876
title: LifeDesks Archive: Nemertea

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13322877
title: LifeDesks Archive: Nemertea

description: This is where EOL hosts source datasets (archives, dumps, etc.) from EOL content partners (especially partners without a web presence of their own).

This organization will also include the content partner utility files EOL connectors use to generate a particular content partner__s resource EOL archive or XML.

For questions or suggestions please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.13318001
title: micro*scope

description: micro*scope is a community that provides descriptive information about all kinds of microbes. It combines locally assembled content with links to other expert sites on the internet. Information is assembled in collections provided by various contributors.
DOI: 10.5281/zenodo.13318002
title: micro*scope

description: micro*scope is a community that provides descriptive information about all kinds of microbes. It combines locally assembled content with links to other expert sites on the internet. Information is assembled in collections provided by various contributors.
DOI: 10.5281/zenodo.13313659
title: INOTAXA: INOTAXA (63) DwCA

description: https://www.semanticscholar.org/paper/INOTAXA-%E2%80%94-INtegrated-Open-TAXonomic-Access-and-the-Weitzman-Lyal/87cea8b8bf5e8779125a8d3b59b006472771a59c


https://dbiosla.org/events/past_sla_conference/Baltimore/inotaxa.pdf

https://www.semanticscholar.org/paper/INOTAXA-%E2%80%94-INtegrated-Open-TAXonomic-Access-and-the-Weitzman-Lyal/87cea8b8bf5e8779125a8d3b59b006472771a59c


https://dbiosla.org/events/past_sla_conference/Baltimore/inotaxa.pdf
DOI: 10.5281/zenodo.13313660
title: INOTAXA: INOTAXA (63) DwCA

description: https://www.semanticscholar.org/paper/INOTAXA-%E2%80%94-INtegrated-Open-TAXonomic-Access-and-the-Weitzman-Lyal/87cea8b8bf5e8779125a8d3b59b006472771a59c


https://dbiosla.org/events/past_sla_conference/Baltimore/inotaxa.pdf

https://www.semanticscholar.org/paper/INOTAXA-%E2%80%94-INtegrated-Open-TAXonomic-Access-and-the-Weitzman-Lyal/87cea8b8bf5e8779125a8d3b59b006472771a59c


https://dbiosla.org/events/past_sla_conference/Baltimore/inotaxa.pdf
DOI: 10.5281/zenodo.13318011
title: USDA PLANTS text cached copy (XML)

description: The PLANTS Database provides standardized information about the vascular plants, mosses, liverworts, hornworts, and lichens of the U.S. and its territories. It includes names, plant symbols, checklists, distributional data, species abstracts, characteristics, images, crop information, automated tools, onward Web links, and references. This information primarily promotes land conservation in the United States and its territories, but academic, educational, and general use is encouraged. PLANTS reduces government spending by minimizing duplication and making information exchange possible across agencies and disciplines.

Data published on EOL by the PLANTS database include attribute data, images and descriptive text.
http://www.eol.org/content_partners/36/resources/108
DOI: 10.5281/zenodo.13318012
title: USDA PLANTS text cached copy (XML)

description: The PLANTS Database provides standardized information about the vascular plants, mosses, liverworts, hornworts, and lichens of the U.S. and its territories. It includes names, plant symbols, checklists, distributional data, species abstracts, characteristics, images, crop information, automated tools, onward Web links, and references. This information primarily promotes land conservation in the United States and its territories, but academic, educational, and general use is encouraged. PLANTS reduces government spending by minimizing duplication and making information exchange possible across agencies and disciplines.

Data published on EOL by the PLANTS database include attribute data, images and descriptive text.
http://www.eol.org/content_partners/36/resources/108
DOI: 10.5281/zenodo.13320588
title: Body Size Data for North American Spiders

description: Body size data for North American spiders extracted from The Insects and Arachnids of Canada: Dondale, C. D. & Redner, J. H. (1978). The insects and arachnids of Canada, Part 5. The crab spiders of Canada and Alaska, Araneae: Philodromidae and Thomisidae. Research Branch Agriculture Canada Publication 1663: 1-255. Dondale, C. D. & Redner, J. H. (1982). The insects and arachnids of Canada, Part 9. The sac spiders of Canada and Alaska, Araneae: Clubionidae and Anyphaenidae. Research Branch Agriculture Canada Publication 1724: 1-194. Dondale, C. D. & Redner, J. H. (1990). The insects and arachnids of Canada, Part 17. The wolf spiders, nurseryweb spiders, and lynx spiders of Canada and Alaska, Araneae: Lycosidae, Pisauridae, and Oxyopidae. Research Branch Agriculture Canada Publication 1856: 1-383. Platnick, N. I. & Dondale, C. D. (1992). The insects and arachnids of Canada, Part 19. The ground spiders of Canada and Alaska (Araneae: Gnaphosidae). Research Branch Agriculture Canada Publication 1875: 1-297.
DOI: 10.5281/zenodo.13320589
title: Body Size Data for North American Spiders

description: Body size data for North American spiders extracted from The Insects and Arachnids of Canada: Dondale, C. D. & Redner, J. H. (1978). The insects and arachnids of Canada, Part 5. The crab spiders of Canada and Alaska, Araneae: Philodromidae and Thomisidae. Research Branch Agriculture Canada Publication 1663: 1-255. Dondale, C. D. & Redner, J. H. (1982). The insects and arachnids of Canada, Part 9. The sac spiders of Canada and Alaska, Araneae: Clubionidae and Anyphaenidae. Research Branch Agriculture Canada Publication 1724: 1-194. Dondale, C. D. & Redner, J. H. (1990). The insects and arachnids of Canada, Part 17. The wolf spiders, nurseryweb spiders, and lynx spiders of Canada and Alaska, Araneae: Lycosidae, Pisauridae, and Oxyopidae. Research Branch Agriculture Canada Publication 1856: 1-383. Platnick, N. I. & Dondale, C. D. (1992). The insects and arachnids of Canada, Part 19. The ground spiders of Canada and Alaska (Araneae: Gnaphosidae). Research Branch Agriculture Canada Publication 1875: 1-297.
DOI: 10.15468/dl.qmrmzr
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus gilliana"
 ]
}

 The dataset includes 449 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069006-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18092629
title: Code(Python google collab version) with excel sheets to upload

description: The code 1, 2 and 3 will generate figures and results.

One has to use the excel data sheeets provided here in the code run.

 

Thanks
DOI: 10.5281/zenodo.18092628
title: Code(Python google collab version) with excel sheets to upload

description: The code 1, 2 and 3 will generate figures and results.

One has to use the excel data sheeets provided here in the code run.

 

Thanks
DOI: 10.5281/zenodo.17458138
title: MARS radar meteor  catalogue 1978

description: This dataset contains a partially restored catalogue of faint radio meteors observed near Kharkiv (49.4° N, 36.9° E) by the 1-MW Meteor Automated Radar System (MARS) operating at 31.1 MHz. It preserves original radar-c omputed results and provides a unique historical record of early automated meteor detection. The radar computed orbital and other parameters internally and printed results on paper strips. The original radar observations (1972–1978) were supervised by A.A. Tkachuk and B.L. Kashcheyev, with contributions from Yu.I. Voloshchuk and A.A. Dyakov in automation and data processing. S.V. Kolomiyets participated in collecting observational data from the 1970s (as a student/young researcher). During the 1990s–2000s, these results were digitized under the supervision of Yu.I. Voloshchuk. S.V. Kolomiyets participated in digitizing the paper-based data. In 2022–2025, the digital data were stored, reprocessed and restored by S.V. Kolomiyets.
DOI: 10.5281/zenodo.17458137
title: MARS radar meteor  catalogue 1978

description: This dataset contains a partially restored catalogue of faint radio meteors observed near Kharkiv (49.4° N, 36.9° E) by the 1-MW Meteor Automated Radar System (MARS) operating at 31.1 MHz. It preserves original radar-c omputed results and provides a unique historical record of early automated meteor detection. The radar computed orbital and other parameters internally and printed results on paper strips. The original radar observations (1972–1978) were supervised by A.A. Tkachuk and B.L. Kashcheyev, with contributions from Yu.I. Voloshchuk and A.A. Dyakov in automation and data processing. S.V. Kolomiyets participated in collecting observational data from the 1970s (as a student/young researcher). During the 1990s–2000s, these results were digitized under the supervision of Yu.I. Voloshchuk. S.V. Kolomiyets participated in digitizing the paper-based data. In 2022–2025, the digital data were stored, reprocessed and restored by S.V. Kolomiyets.
DOI: 10.15468/dl.bv5q9y
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus glauca"
 ]
}

 The dataset includes 39 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069009-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grrg5f
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus guyavifolia"
 ]
}

 The dataset includes 221 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069010-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crxcgx
title: Occurrence Download

description: A dataset containing 110599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus coccifera"
 ]
}

 The dataset includes 110599 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068980-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13130/rd_unimi/zqmscy/hfokkz
title: 3.1.0.REGENIE_STEP1_STEP2_NVS.sh

description: Bash script to run multivariable linear regression model, using REGENIE software, for NVS phenotype.
DOI: 10.13130/rd_unimi/zqmscy/ocqdnw
title: 3.2.1.REGENIE_STEP1_STEP2_PI.sh

description: Bash script to run multivariable linear regression model with genotypes, using REGENIE software, for pain intensity (PI) phenotype.
DOI: 10.13130/rd_unimi/zqmscy/lueugu
title: 2.QC_PLINK.sh

description: Quality check performed on genotypes data using PLINK v.1.9.
Each command used is reported with the respective explanation about the use of it.
DOI: 10.13130/rd_unimi/zqmscy/mn6hww
title: 1.2.MultivariableLinearRegression_PI_updated.R

description: R script for Multivariable linear regression model performed for PI phenotype
DOI: 10.13130/rd_unimi/zqmscy/ibutqf
title: 1.1.MultivariableLinearRegression_NVS_Stepwisesel_updated.R

description: R script for multivariable linear regression model performed for NVS phenotype
DOI: 10.13130/rd_unimi/zqmscy/qfx2z7
title: 3.2.2.manhattan_plot_PI.py

description: Python script for the creation of the GWAS specific plot for PI phenotype, called Manhattan Plot (Figure4)
DOI: 10.13130/rd_unimi/zqmscy/xdygpf
title: 3.1.2.manhattanplot_NVS.py

description: Python script about the creation of the GWAS specific plot for NVS phenotype, called ManhattanPlot (Figure3).
DOI: 10.13130/rd_unimi/zqmscy/odtwhq
title: 5.2.sLDSC_PI.sh

description: Bash script to perform stratified Linkage Disequilibrium score regression on PI phenotype.
DOI: 10.13130/rd_unimi/zqmscy/nji4gv
title: 3.2.0.CreatingREGENIEoutput_nodosagePI.R

description: R script to combine each chromosome output from REGENIE into one single file, and saving. This script is used for Pain Intensity (PI) phenotype.
DOI: 10.13130/rd_unimi/zqmscy/oesfqb
title: 3.1.1.CreatingRegeneiOutput_avNVS_omed.R

description: R script for merging all the REGENIE outputs for each chromosome into one single file. This script is used for nausea and vomiting (NVS) phenotype.
DOI: 10.13130/rd_unimi/zqmscy/zvupgq
title: 5.0.MungingGWASSumstats_4LDSC_PI.sh

description: This bash script is used to create the "munged" imput file, to run different analyses with the LDSC software. To run this script, use the command line "sh MungingGWASSumstats_4LDSC_PI.sh"
DOI: 10.13130/rd_unimi/zqmscy/7mum8p
title: 4.0.Colocalization_eQTLGen_PI.R

description: This R script contains all the command to perform colocalization and plot to visualize it (Figure 7).
DOI: 10.13130/rd_unimi/zqmscy/mxwfpt
title: 5.1.Pain_heritability.ldsc.sh

description: This bash script is used to calculate the heritability for Pain Intensity (PI) phenotype using LDSC software. Run it with sh Pain_heritability.ldsc.sh
DOI: 10.13130/rd_unimi/zqmscy/5dzv0c
title: 6.0.PainIntensity_BidirectionalMR.R

description: R script to perform Bidirectional Mendelian Randomization using Pain Intensity (PI) first as exposure and then as outcome. (Figure 9 and 10)
DOI: 10.13130/rd_unimi/zqmscy/ndz2mz
title: 5.3.CreatingBarPlot_sLDSC_results.R

description: Rscript performed to create the required barplot for sLDSC results visualization (Figure 8).
DOI: 10.13130/rd_unimi/zqmscy/usr6qg
title: README_Dataverse_MinnaiF_Dataset.txt

description: README file containing all the information about the file here uploaded.
DOI: 10.13130/rd_unimi/zqmscy
title: Replication Data for: "Pharmacogenomics of opioid response in European advanced cancer patients"

description: This dataset contains the bioinformatic and statistical scripts developed and used to perform the genetic analyses described in my PhD thesis entitled “Pharmacogenomics of opioid response in European advanced cancer patients”, with the aim of ensuring transparency and reproducibility of this analytical workflow.

The scripts were applied to investigate inter-individual genetic variability in European advanced cancer patients to opioid treatment response, both in terms of efficacy, measured as Pain Intensity (PI) and treatment-related side effects, particularly nausea and vomiting, measured through a numerical Nausea-Vomiting Score (NVS).

Particularly, the scripts were used to perform genotype quality control, genome-wide association studies (GWAS), multivariable linear regression models, heritability estimation using LD Score Regression (LDSC), stratified LD Score Regression (sLDSC), colocalization analyses with eQTL data, and bidirectional Mendelian Randomization analyses.

The files provided are organized according to the analytical workflow described in the thesis and they are mainly written in Bash, R and Python language. 
The file naming conventions reflect the order of the analysis and the phenotype investigated, to facilitate understanding by other researchers. 

In compliance with the General Data Protection Regulation (GDPR), only analysis scripts are provided; no individual-level genetic or phenotypic data are included in this dataset.
description: PLINK, 1.9
description: REGENIE, 3.2.5
description: R, &gt;= 4.0
description: LDSC
description: Python, 3
description: TwoSampleMR R package
description: coloc R package
description: splitstackshape R package
description: dplyr R package
description: gridExtra R package
description: pandas python package
description: numpy python package
DOI: 10.15468/dl.22wigg
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Miconia tristis Spring",
 "TaxonKey is Miconia tristis Spring. ex Mart."
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 438 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001005-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.moza2p
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Guapira discolor (Spreng) Little",
 "HasCoordinate is true"
 ]
}

 The dataset includes 107 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001170-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.00holc
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxymycterus nasutus (Waterhouse, 1837)"
 ]
}

 The dataset includes 43 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001005-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqrzb5
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Fimbristylis bisumbellata (Forssk.) Bubani",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 693 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016669-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtbwom
title: Occurrence Download

description: A dataset containing 1969 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugralla paradoxa (Kittlitz, 1830)"
 ]
}

 The dataset includes 1969 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038222-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.muz1nj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Year 2000-2020",
 "TaxonKey is Ceratitis capitata (Wiedemann, 1824)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047925-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujepwo
title: Occurrence Download

description: A dataset containing 29343 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bison C.H.Smith, 1827"
 ]
}

 The dataset includes 29343 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008458-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftdjkm
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Narcissus bulbocodium var. nivalis (Graells) Baker"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016654-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.imedjc
title: Occurrence Download

description: A dataset containing 1969 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugralla paradoxa (Kittlitz, 1830)"
 ]
}

 The dataset includes 1969 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038223-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.