cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ykvpjk42jw
title: Azohydromonas lata chemostat culture and metabolic model

description: A complementary experimental and modeling approach was used to analyze the production of PHB in chemostat cultures of A. lata DSM1123. The counterintuitive PHB accumulation under glucose-limited conditions, a situation where only biomass production should be observed, can be explained as the result of two internal metabolic constraints: a limited flow through the Krebs cycle and a maximum metabolically active protein. Given the predictive power and simplicity of the model, it may be used for assessing the impact of expressing synthetic pathways for target metabolites production, where the new enzymes must compete for the total protein pool.
DOI: 10.6084/m9.figshare.7415786.v1
title: Microbial binning using VAMB of human gut microbiome Integrated Gene Catalogue - All bins

description: Metagenomics bins of the Human gut microbiome, Integrated Gene Catalogue. Consists of 9.8 million genes and 1270 samples. Bins are created using Variational Autoencoders for Metagenomics Binning (VAMB), a method that used deep learning to improve binning of microbial genomes from metagenomics datasets.
DOI: 10.6084/m9.figshare.29002487.v2
title: 2.3. Y Pearson's Correlation Pre-test (Ouput Data) - Doomscrolling and Information Overload on Generation Z: Examining the Link Between Excessive Digital Media Consumption and Stress Level

description: Pre-test analysis Y variable (excessive digital media consumption) results using IBM SPSS Statistics 26 for research title "Doomscrolling and Information Overload on Generation Z: Examining the Link Between Excessive Digital Media Consumption and Stress Level".
DOI: 10.6084/m9.figshare.6115145.v2
title: STAgR_tdTomato

description: This plasmid can be used as a PCR Template for generating STAgR cloning vectors with red fluorescence.
DOI: 10.17632/f4hx274nbz
title: Replication Data For: Irrigation and the Spatial Pattern of Local Economic Development in India

description: Replication Data For: Blakeslee, D., Dar, A., Fishman, R., Malik, S., Pellegrina, H. S., & Bagavathinathan, K. S. (2023). Irrigation and the spatial pattern of local economic development in India. Journal of Development Economics, 161, 102997. https://doi.org/10.1016/j.jdeveco.2022.102997
DOI: 10.17632/w2r9frh25w
title: Monitoring the respiratory behavior of multiple cows based on computer vision and deep learning

description: The file is the detailed hyperparameters about the network structure in the research of monitoring the respiratory behavior of multiple cows based on computer vision and deep learning.
DOI: 10.6084/m9.figshare.1560592.v1
title: Grassland Dataset 1

description: The purpose of this lab was to experience field training with plants and to collect datasets to familiarize with sampling tools.It took place in the Danby Grassland and Woodlot area on September 24th 2015 between 2:30pm and 4:20pm. Each of the 4 members - Simranjit Kang, Ava Kamali, Katrin Chapkis, Jennifer Mariathas - of the group contributed to collecting data. We used quadrats to record the dataset. Sample size is 20.
DOI: 10.6084/m9.figshare.28523627.v1
title: RNA-seq very young breast cancer

description: Breast cancer predominantly affects women over 50, but about 5% of cases occur in very young women, aged 35 or younger, presenting significant clinical challenges and poorer outcomes. This study evaluated molecular differences between very young breast cancer (VYBC) and old breast cancer (OBC) patients, focusing on the hormone receptor-positive/HER2-negative (HR+/HER2-) subtype and therapeutic implications. Transcriptomic analysis of 49 untreated primary tumors (22 VYBC and 27 OBC) revealed distinct molecular profiles. In the HR+/HER2- subtype, VYBC tumors showed increased heterogeneity and upregulation of genes related to proliferation, chromosome instability, and immune activation compared to OBC. Deconvolution algorithms confirmed elevated immune cell infiltration and overexpression of immunological checkpoints, indicating a "hot" tumor microenvironment. Histological validation demonstrated significantly higher tumor-infiltrating lymphocytes and tertiary lymphoid structures in VYBC, supporting the potential efficacy of immunotherapy in this subgroup. These findings underscore the biological complexity and highlight opportunities for personalized therapeutic strategies for HR+/HER2- VYBC.
DOI: 10.6084/m9.figshare.28959830.v1
title: <b>Supplementary Materials</b><b>（</b><b>Table S1-S5</b><b>）</b>

description: Table S1. Primer statistics for cytokines and chemokinesTable S2. Lipid subclasses identified for PlasmaTable S3. Plasma Differential Lipid Molecule StatisticsTable S4. KEGG Pathway Analysis of Differential lipids in PlasmaTable S5. Topological analysis of KEGG pathways
DOI: 10.6084/m9.figshare.7398788.v1
title: Hybrid Hierarchical Linear Model-System Dynamics (HLMSD) Models for Predicting and Monitoring the Bridge Deterioration

description: This data is the result of recording the bridge and its component's condition based on BMS guidelines. It is used to model the Hybrid Hierarchical Linear Model-System Dynamics (HLMSD) for Predicting and Monitoring the Bridge Deterioration. This model is needed not only to predict the condition of the bridge and its components themselves but also to predict its failure in order to avoid collapse suddenly. Furthermore, based on the results of this research, this model can also be used as a reference to determine the period of maintenance and repair of bridges based on the specified requirements. This study can still develop in advanced so that the model can always update its data by itself which becomes more valid. It can also be equipped with additional equipment to be able to assess conditions and predictions automatically in order to monitor bridge reliability well.
DOI: 10.17632/jbthtbm9bd
title: A new software implementation of the Oslo method with rigorous statistical uncertainty propagation

description: The Oslo method comprises a set of analysis techniques designed to extract nuclear level density and average γ-decay strength function from a set of excitation-energy tagged γ-ray spectra. Here we present a new software implementation of the entire Oslo method, called OMpy. We provide a summary of the theoretical basis and derive the essential equations used in the Oslo method. In addition to the functionality of the original analysis code, the new implementation includes novel components such as a rigorous method to propagate uncertainties throughout all steps of the Oslo method using a Monte Carlo approach. The resulting level density and γ-ray strength function have to be normalized to auxiliary data. The normalization is performed simultaneously for both quantities, thus preserving all correlations. The software is verified by the analysis of a synthetic spectrum and compared to the results of the previous implementation, the oslo-method-software.
DOI: 10.6084/m9.figshare.12805886.v1
title: Dissecting the chromosome-level genome of Asian Clam (Corbicula fluminea)

description: We assembled a genome of 1.52 Gb the comprised 4728 contings with a contig N50 of 521 Kb and 1215 scaffolds with a scaffold N50 of 70.62Mb.<br>
DOI: 10.6084/m9.figshare.21865455.v1
title: Data

description: Data.
DOI: 10.17632/34ywyprjgz
title: Raw metagenomic data of bacterial communities of sediment sample collected from Central Reef Island of Vietnam

description: The dataset describes the composition of bacterial communities of sediment samples collected from Central Reef Island (Spratly islands) of Vietnam based on 16S rRNA gene sequences.
DOI: 10.6084/m9.figshare.12523439.v2
title: Integrated energy distribution systems

description: System data of a 4-bus-5-node, a 33-bus-32-node, and a 123-bus-32-node heat and electricity integrated energy distribution systems.Refer to my work "Distributionally robust resilience-oriented operation of integrated energy distribution systems" if published.
DOI: 10.6084/m9.figshare.25843774.v1
title: Appendix A.pdf

description: This data base is part of an ongoing research on Egyptian real estate cycle demand and supply, and other macroeconomic factors that can impact this cycle.
DOI: 10.6084/m9.figshare.28281653.v2
title: result

description: my mehod result in two regions
DOI: 10.6084/m9.figshare.4747660.v1
title: Supplementar Material for: Population-Genetic Influences on Genomic Estimates of the Inbreeding Coefficient: A Global Perspective

description: <strong><em>Background/Aims:</em></strong> Culturally driven marital practices provide a key instance of an interaction between social and genetic processes in shaping patterns of human genetic variation, producing, for example, increased identity by descent through consanguineous marriage. A commonly used measure to quantify identity by descent in an individual is the inbreeding coefficient, a quantity that reflects not only consanguinity, but also other aspects of kinship in the population to which the individual belongs. Here, in populations worldwide, we examine the relationship between genomic estimates of the inbreeding coefficient and population patterns in genetic variation. <b><i>Methods:</i></b> Using genotypes at 645 microsatellites, we compare inbreeding coefficients from 5,043 individuals representing 237 populations worldwide to demographic consanguinity frequency estimates available for 26 populations as well as to other quantities that can illuminate population-genetic influences on inbreeding coefficients. <b><i>Results:</i></b> We observe higher inbreeding coefficient estimates in populations and geographic regions with known high levels of consanguinity or genetic isolation and in populations with an increased effect of genetic drift and decreased genetic diversity with increasing distance from Africa. For the small number of populations with specific consanguinity estimates, we find a correlation between inbreeding coefficients and consanguinity frequency (<i>r</i> = 0.349, p = 0.040). <b><i>Conclusions:</i></b> The results emphasize the importance of both consanguinity and population-genetic factors in influencing variation in inbreeding coefficients, and they provide insight into factors useful for assessing the effect of consanguinity on genomic patterns in different populations.
DOI: 10.6084/m9.figshare.5125597.v1
title: Supplementary Material for: Ventricular Extension of Intracerebral Hemorrhage during Intravenous Thrombolysis

description: Medicine
DOI: 10.6084/m9.figshare.23282789.v1
title: viral.genomes.fasta

description: The 12118 high-quality or complete genomes obtained by COBRA analyses from 231 freshwater metagenomes.
DOI: 10.6084/m9.figshare.26954650.v3
title: Dataset of Chadam peatland and data compilation of northern peatlands

description: Datasets supporting the findings of Yang et al., 2025, Comm Earth EnvironThese datasets inclued:Geochemistry of surface plant and peat samples in Chadam peatlandGeochemistry of samples of peat cores of CD21-C1&4&6 in Chadam peatlandC and N densities at depth of 1 meter in northern peatlands<br>
DOI: 10.6084/m9.figshare.28512758.v2
title: <b>Mouse MFB patch recordings - </b><b>AOL </b><b>3D 2 Photon Calcium imaging</b>

description: Individual cerebellar mossy fiber axons (MFAs) convey both sensory and motor information. Here, we present the population activity of pontine MFAs, which we found to be heterogeneous and high-dimensional. Furthermore, different subpopulations of MFAs are active during distinct behavioral states, with some preferentially engaged during quiet periods and others during active movement.
DOI: 10.17632/syz787ct29
title: Party and State Leaders of China. Biographical Data (1978-2019)

description: The dataset contains coded information on 71 people who fall within the category of “Party and State Leaders” of China. This category, although not clearly defined in official documents, is often used in the state media and governmental papers. The list of names is available on Baidu, a Chinese online search engine. To collect data on these leaders the authors used the official website of CCP, Xinhua as well as ChinaVitae, a database collected by Carnegie-Tsinghua Center. When any contradictions in biography data were found, the information provided by official websites was considered true. Since it is impossible to find every significant episode in the lives of every elite member in open or official sources, the team decided to register data since 1978, the year when the famous policy of reforms and openness was proclaimed. The dataset consists of three spreadsheets. The first one contains biographical data organized in the following columns: name, birth year, party membership year, province of birth, the township of birth, organ, department, position, year of assuming the post, year of leaving the post. The team chose to code the organs hierarchically as far as local bodies were concerned, i.e. the prefecture-level committee was labeled differently from the province-level committee. Original names were kept for individual organs, such as various mass organizations or enterprises’ names to reduce the risk of identifying false connections. The team further assigned a department within the organ where it was possible and necessary: the information on a department within prefecture-level instances and non-state organs, was not always available. Each year between 1978 and 2019 is also registered in a separate column to identify connections among the elite members. By connection, the team means the experience of studying or working at the same university/organ within a given year. Each connection is assigned weight, the largest being four: working in the same province, the same organ, the same town within a province (for provincial and municipal levels), and the same department within the organ. There are several exceptions as regards identifying connections. First, the same province and township of birth only count as one connection for the entire career. Second, the authors do not consider people who work in Beijing to have territorial connections. Only if two elite members work in the same organ in Beijing does the coincidence count as a connection. Third, the authors exclude CC CPC membership as a type of connection since the organ does not operate on a daily basis. The team registered connections from 1978 to 2019 and created an unweighted spreadsheet containing 5,832 rows (edges). The authors calculated the weight of connections within each existing pair of elite members and removed duplicates to create a weighted edge list. The connections are undirected, and there is no difference between where a name sits in the A-B connection pair.
DOI: 10.17632/zpxrts59g2
title: Cryo-EM structure of the zinc-activated channel (ZAC) in the Cys-loop receptor superfamily

description: Original WB images, Representative current traces, Numeric Data
DOI: 10.6084/m9.figshare.5671681.v1
title: DSC - resin characterization, fig 5.3

description: Figure 5.3 - DSC curves<br>
DOI: 10.6084/m9.figshare.12852738.v1
title: Me, myself and the other. Interreligious and intrareligious relations in neo-conservative online forums

description: The Internet can be a place for exchange, but also foster echo chambers of closed world views. This poses interesting questions for the possibility of interreligious dialogue online. The article examines the cases of German Evangelical and Salafist Internet forums which mainly target a specific religious denomination, but nevertheless provide spaces for contact between different religions and denominations. For the study, a combination of quantitative and qualitative text analysis is applied. Quantitative analysis makes it possible to gain an overview of the discussed themes from a large body of text and serves as a basis for sampling smaller textual units for close examination using qualitative content analysis. The analysis yields two primary results: First, intrareligious dialogue plays a particular role for the negotiation of religious identity. Second, interreligious relations reflect the societal positions of both religious groups.
DOI: 10.6084/m9.figshare.22580473.v6
title: Global Urban Network SVI Data

description: This data set contains segmentation masks for city-scale street view imagery. We employ Meta's Mask2Former approach (Cheng, 2022) for image segmentation. <br> We obtain SVI from Mapillary which is the world's largest platform for free and open street view imagery (SVI). Till date, Mapillary's coverage has penetrated most global cities around the world. Compared to other proprietary options such as Google Street View, Mapillary images are hosted on a CC-BY-SA 4.0 licence, which allows users to freely share, use, and adapt images. <br> Images are subsampled proportionately based on geographic tiling of each city's administrative boundary and filtered to remove non-frontal facing and non-daylight images. <br> <br>
DOI: 10.17632/gzhfdtmhcm
title: School Leavers Study for Latent Code Identification Replication

description: Essay database for replication purposes for the study: Latent Code Identification [LACOID]: A Machine Learning-Based Integrative Framework [and Open-Source Software] to Classify Big Textual Data, Rebuild Contextualized/Unaltered Meanings, and Avoid Aggregation Bias
Manuel S. González Canché
Accepted version available here: https://drive.google.com/file/d/17uADm0_7ygT2FhYp_2krRrXS-Kj3sjXh/view?usp=sharing
Accepted version available here: https://drive.google.com/file/d/17uADm0_7ygT2FhYp_2krRrXS-Kj3sjXh/view?usp=sharing

Labeling or classifying textual data and qualitative evidence is an expensive and consequential challenge. The rigor and consistency behind the construction of these labels ultimately shape research findings and conclusions. A multifaceted methodological conundrum to address this challenge is the need for human reasoning for classification that leads to deeper and more nuanced understandings; however, this same manual human classification comes with the well-documented increase in classification inconsistencies and errors, particularly when dealing with vast amounts of documents and teams of coders. An alternative to human coding consists of machine learning-assisted techniques. These data science and visualization techniques offer tools for data classification that are cost-effective and consistent but are prone to losing participants’ meanings or voices for two main reasons: (a) these classifications typically aggregate all text inputs into a single topic or code and (b) these words configuring texts are analyzed outside of their original contexts. To address this challenge and analytic conundrum, we present an analytic framework and software tool, that addresses the following question: How to classify vast amounts of qualitative evidence effectively and efficiently without losing context or the original voices of our research participants and while leveraging the nuances that human reasoning bring to the qualitative and mixed methods analytic tables? This framework mirrors the line-by-line coding employed in human/manual code identification but relying on machine learning to classify texts in minutes rather than months. The resulting outputs provide complete transparency of the classification process and aid to recreate the contextualized, original, and unaltered meanings embedded in the input documents, as provided by our participants. We offer access to the textual database required to replicate all the analyses. We hope this opportunity to become familiar with the analytic framework and software, may result in expanded access of data science tools to analyze qualitative evidence.

Replication steps and outcomes (pages 12 and 13 in the paper)
First download and extract the data from this repository
DOI: 10.6084/m9.figshare.11953173.v1
title: Additional file 7 of The genome evolution and domestication of tropical fruit mango

description: Additional file 7: Table S5. Summary of transposable elements in mango genome.
DOI: 10.6084/m9.figshare.3522371.v1
title: Appendix B. Population means of annual seed production and seedling recruitment for 1987-1997.

description: Population means of annual seed production and seedling recruitment for 1987-1997.
DOI: 10.6084/m9.figshare.4833806.v1
title: Biphonal calls in Atlantic spotted dolphins (<i>Stenella frontalis</i>): bitonal and burst-pulse whistles

description: Biphonation, the simultaneous production of two sounds by a single animal, is found in the vocalizations of a range of mammalian species. Its prevalence suggests it plays an important role in acoustic communication. Concurrent vocal and behavioural recordings were made of Atlantic spotted dolphins (<i>Stenella frontalis</i>) off Bimini, The Bahamas. The occurrence of two types of biphonal signals is reported: burst-pulse whistles with combined tonal and burst-pulse elements, and bitonal whistles. Biphonal whistles are rarely described in reports of dolphin acoustic repertoires, but were common in these dolphins: of all whistles analysed (<i>n</i> = 1211), 26.84% were burst-pulse whistles and 4.71% were bitonal whistles. A subset of whistles (<i>n</i> = 397) were attributed to dolphins of specific age classes, and used to compare prevalence of biphonation across age. Biphonation occurred in 61.54% of sexually mature and 48.32% of sexually immature dolphins’ whistles. Sexually immature dolphins emitted more burst-pulse whistles than older dolphins: 44.13% of sexually immature dolphins’ whistles were burst-pulse whistles, while 15.38% of adult whistles were burst-pulse whistles. Bitonal whistle production was more prevalent in sexually mature dolphins: 41.03% of adult whistles were bitonal, while only 4.19% of sexually immature dolphins’ whistles were bitonal. The prevalence of a biphonal component in specific repeated, stereotyped whistle contours suggests that these acoustic features could be important components of contact calls, or signature whistles. The biphonal components of spotted dolphin whistles may serve to convey additional information as to identity, age or other factors to conspecifics.
DOI: 10.17605/osf.io/v83cp
title: Effects of Interoperability among Public Administrations on Spanish Guaranteed Minimum Income

description: Data Panel (repeated measures) - Regions (MM/YYYY) :
Interoperability queries vs. approved Incomes
DOI: 10.6084/m9.figshare.28464398.v1
title: Mexico's High Resolution Climate Database (MexHiResClimDB): Monthly and yearly normals of Tmin, Tavg, Tmax and precipitation in Mexico for the 1951-1980 period

description: Monthly and yearly normals of Tmin, Tavg, Tmax and precipitation in Mexico for the 1951-1980 period. These normals were computed from the monthly values of the MexHiResClimDB which were in turn determined from the daily gridded values. <br>Filesmonthlynorm5180precip.zip Precipitation monthly normals, 1951-1980 periodmonthlynorm5180avgtmin.zip Minimum temperature monthly normals, 1951-1980 periodmonthlynorm5180avgtmax.zip Maximum temperature monthly normals, 1951-1980 periodmonthlynorm5180avgtavg.zip Average temperature monthly normals, 1951-1980 period<br>yearnorm5180precip.zip Precipitation yearly normal 1951-1980 periodyearnorm5180avgtmin.zip Minimum temperature yearly normal 1951-1980 periodyearnorm5180avgtmax.zip Maximum temperature yearly normal 1951-1980 periodyearnorm5180avgtavg.zip Average temperature yearly normal 1951-1980 period<br>
DOI: 10.17632/7t5jg4ms99
title: day ahead electricity price data

description: This data is collected from the IEX electricity market.