cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48420/22672372.v1
title: DNA sequence alignment files for constructing haplotype networks using <em>COI </em>sequence of Anopheles mosquitoes.

description: These are .nex files for nine Anopheles species that were abundantly found in the West Khasi hills and West Jainitia hills district in Meghalaya state of India. These alignment files were used to make haplotype networks in the software POPART. The data contains sequences from three study sites: Nartiang, Barato and Nonglang. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/22672372
title: DNA sequence alignment files for constructing haplotype networks using <em>COI </em>sequence of Anopheles mosquitoes.

description: These are .nex files for nine Anopheles species that were abundantly found in the West Khasi hills and West Jainitia hills district in Meghalaya state of India. These alignment files were used to make haplotype networks in the software POPART. The data contains sequences from three study sites: Nartiang, Barato and Nonglang. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/22672369
title: DNA sequence alignments for F<sub>ST</sub> statistical analysis for three Anopheles species collected from Meghalaya, India.

description: These files are <em>COI</em> sequences for three <em>Anopheles</em> species, <em>An. pseudowillmori, An. jeyporiensis and An. maculatus</em>.The DNA sequence alignments were used for generating F<sub>ST</sub> statistics in the software Arlequin v3. Each fasta file contains sequences from two different populations, i.e. from two study sites Nonglang and Nartiang in Meghalaya. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/22672369.v1
title: DNA sequence alignments for F<sub>ST</sub> statistical analysis for three Anopheles species collected from Meghalaya, India.

description: These files are <em>COI</em> sequences for three <em>Anopheles</em> species, <em>An. pseudowillmori, An. jeyporiensis and An. maculatus</em>.The DNA sequence alignments were used for generating F<sub>ST</sub> statistics in the software Arlequin v3. Each fasta file contains sequences from two different populations, i.e. from two study sites Nonglang and Nartiang in Meghalaya. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/22672366
title: Fasta alignment files for calculating genetic diversity indices in ten <em>Anopheles </em>species from Meghalaya.

description: These DNA sequences consist of partial <em>COI</em> gene for ten <em>Anopheles</em> species found abundantly in the three study sites of Meghalaya in northeast India. These files were used to calculate haplotype diversity, nucleotide diversity, Tajima's D in the software DNASP. The results of this analysis are published in Table 1 of the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/22672360.v1
title: DNA sequence files for reconstructing phylogenetic trees for <em>Anopheles </em>mosquitoes of Meghalaya, India.

description: These alignment files were used for the reconstructing phylogenetic tree in RAxML and to calculate the intraspecific genetic distance (K2P distance) in the software MEGA X. The DNA sequences are partial COI genes used for the barcoding of organisms. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/22672360
title: DNA sequence files for reconstructing phylogenetic trees for <em>Anopheles </em>mosquitoes of Meghalaya, India.

description: These alignment files were used for the reconstructing phylogenetic tree in RAxML and to calculate the intraspecific genetic distance (K2P distance) in the software MEGA X. The DNA sequences are partial COI genes used for the barcoding of organisms. For more information please refer to the paper https://doi.org/10.1016/j.meegid.2023.105450
DOI: 10.48420/23289797
title: Outputs of TriTan for PBMC-10K data

description: Supplementary materials for output results. PBMC-10K: Human peripheral blood mononuclear cells of 10X Multiome from(https://www.10xgenomics.com/resources/datasets/pbmc-from-a-healthy-donor-granulocytes-removed-through-cell-sorting-10-k-1-standard-1-0-0) . matrices.zip: the .zip file which contains feature cluster matrices and association matrices. pegs_pval.tsv :.tsv file which contains p-values from PEGS showing the enrichment of gene sets and peak sets.
DOI: 10.48420/23289797.v1
title: Outputs of TriTan for PBMC-10K data

description: Supplementary materials for output results. PBMC-10K: Human peripheral blood mononuclear cells of 10X Multiome from(https://www.10xgenomics.com/resources/datasets/pbmc-from-a-healthy-donor-granulocytes-removed-through-cell-sorting-10-k-1-standard-1-0-0) . matrices.zip: the .zip file which contains feature cluster matrices and association matrices. pegs_pval.tsv :.tsv file which contains p-values from PEGS showing the enrichment of gene sets and peak sets.
DOI: 10.21227/4f5b-gx15
title: UWB Active-Passive Two-Way Ranging Protocol Data Captured in an Industrial Environment

description: Dataset containing Ultra-Wideband (UWB) Active-Passive Two-Way-Ranging (AP-TWR) protocol range estimates, using the Qorvo DW1000 chip-based Eliko UWB RTLS system. Data was captured in an industrial environment, at the premises of a thermoplastic pipe manufacturer Krah Pipes OÜ, located near Tallinn, Estonia in December 2022.Tests consisted of 1) 30 arbitrarily chosen stationary points on the factory floor 2) A movement track marked on the lines of the factory floor. The true coordinates of the stationary points and the critical points of the movements are measured with the Leica DISTO S910 laser distance meter. The data was used to validate the proposed AP-TWR-based Adaptive Extended Kalman Filter (A-EKF) position estimation method.
DOI: 10.34740/kaggle/dsv/5883535
title: 3kk Nicknames of minecraft players • big update
DOI: 10.5517/ccdc.csd.cc2c5m39
title: CCDC 2180140: Experimental Crystal Structure Determination

description: Related Article: Todd N. Poe, Harry Ramanantoanina, Joseph M. Sperling, Hannah B. Wineinger, Brian M. Rotermund, Jacob Brannon, Zhuanling Bai, Benjamin Scheibe, Nicholas Beck, Brian N. Long, Samantha Justiniano, Thomas E. Albrecht-Schönzart, Cristian Celis-Barros|2023|Nature Chemistry|15|722|doi:10.1038/s41557-023-01170-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5m4b
title: CCDC 2180141: Experimental Crystal Structure Determination

description: Related Article: Todd N. Poe, Harry Ramanantoanina, Joseph M. Sperling, Hannah B. Wineinger, Brian M. Rotermund, Jacob Brannon, Zhuanling Bai, Benjamin Scheibe, Nicholas Beck, Brian N. Long, Samantha Justiniano, Thomas E. Albrecht-Schönzart, Cristian Celis-Barros|2023|Nature Chemistry|15|722|doi:10.1038/s41557-023-01170-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8017214
title: bksnake_reference_genomes_2022-07-15_hg38

description: Human hg38 reference genomes and annotations files from RefSeq/NCBI and Ensembl. Archived in a tar.gz file. Files are processed and formatted so that they can be used together with the bulk RNASeq pipeline "bksnake". STAR index files for the genome file are also included. The tar.gz file contains the following data folders genomes_2022-07-15_hg38/fasta genomes_2022-07-15_hg38/star_2.7.10b genomes_2022-07-15_hg38/gtf/ensembl genomes_2022-07-15_hg38/gtf/refseq "fasta" contains fasta genomic sequences and index files, as well as ribosomal transcripts "intervals" and chromosome "dictionary" files. "star_2.7.10b" contains STAR aligner index files. "gtf/ensembl" and "gtf/refseq" contain Ensembl and RefSeq gtf files as well as "genePred" and "refFlat" files. The recipe how to generate these files is going to be published in github. The bulk RNASeq pipeline "bksnake" is going to be published in github.
DOI: 10.5281/zenodo.8017213
title: bksnake_reference_genomes_2022-07-15_hg38

description: Human hg38 reference genomes and annotations files from RefSeq/NCBI and Ensembl. Archived in a tar.gz file. Files are processed and formatted so that they can be used together with the bulk RNASeq pipeline "bksnake". STAR index files for the genome file are also included. The tar.gz file contains the following data folders genomes_2022-07-15_hg38/fasta genomes_2022-07-15_hg38/star_2.7.10b genomes_2022-07-15_hg38/gtf/ensembl genomes_2022-07-15_hg38/gtf/refseq "fasta" contains fasta genomic sequences and index files, as well as ribosomal transcripts "intervals" and chromosome "dictionary" files. "star_2.7.10b" contains STAR aligner index files. "gtf/ensembl" and "gtf/refseq" contain Ensembl and RefSeq gtf files as well as "genePred" and "refFlat" files. The recipe how to generate these files is going to be published in github. The bulk RNASeq pipeline "bksnake" is going to be published in github.
DOI: 10.5517/ccdc.csd.cc29b72z
title: CCDC 2124990: Experimental Crystal Structure Determination

description: Related Article: Yujie Ma, Wanpeng Lu, Xue Han, Yinlin Chen, Ivan da Silva, Daniel Lee, Alena M. Sheveleva, Zi Wang, Jiangnan Li, Weiyao Li, Mengtian Fan, Shaojun Xu, Floriana Tuna, Eric J. L. McInnes, Yongqiang Cheng, Svemir Rudić, Pascal Manuel, Mark D. Frogley, Anibal J. Ramirez-Cuesta, Martin Schröder, Sihai Yang|2022|J.Am.Chem.Soc.|144|8624|doi:10.1021/jacs.2c00952
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.mw6t8njx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1844 records)
DOI: 10.5519/qd.dycnklmy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (780 records)
DOI: 10.5519/qd.66j6dulw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (291 records)
DOI: 10.34943/1480645b-bfc9-434f-84a5-71ae29346902
title: Douglas Channel Adapter Deployed 2023-05-31

description: The MOXA ioLogik E1214 TAICB1011405 was deployed on 2023-05-31 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Adapter. Instrument adapters connect a variety of sensors and instruments. Typically, these devices do not collect any data, and our digital infrastructure system does not communicate with them. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/1c3fe0ac-751b-44d8-a945-434710965b82
title: Douglas Channel Adapter Deployed 2023-05-31

description: The MOXA ioLogik E1242 TAIKB1000219 was deployed on 2023-05-31 at Douglas Channel. Douglas Channel is one of the principal inlets of the British Columbia coast. This device is a Adapter. Instrument adapters connect a variety of sensors and instruments. Typically, these devices do not collect any data, and our digital infrastructure system does not communicate with them. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.23452988
title: Supplementary Material for: Serum IGFBP7 deriving from spleen and lung could be used for early recognition of cardiac surgery-associated acute kidney injury

description: Introduction: The utility of arithmetic product of urinary tissue metalloproteinase inhibitor 2 (TIMP2) and insulin-like growth factor-binding protein 7 (IGFBP7) concentrations has been widely accepted on early diagnosis of acute kidney injury (AKI). However, which organ is the main source of those two factors and how the concentration of IGFBP7 and TIMP2 changed in serum during AKI still remain to be defined. Methods: In mice, gene transcription and protein levels of IGFBP7/TIMP2 in the heart, liver, spleen, lung, and kidney were measured in both ischaemia-reperfusion injury (IRI)- and cisplatin-induced AKI models. Serum IGFBP7 and TIMP2 levels were measured and compared in patients before cardiac surgery, and at inclusion (0 h), 2 h, 6 h and 12 h after Intensive Care Unit (ICU) admission, and compared with serum creatinine, blood urea nitrogen (BUN), estimated glomerular filtration rate (eGFR) and serum uric acid (UA). Results: In mouse IRI-AKI model, compared with the sham group, the expression levels of IGFBP7 and TIMP2 did not change in the kidney, but significantly upregulated in the spleen and lung. Compared with patients who did not develop AKI, the concentration of serum IGFBP7 at as early as 2 h after ICU admission (s[IGFBP7]-2 h) was significantly higher in patients who developed AKI. The relationships between s[IGFBP7]-2 h in AKI patients and log2(SCr), log2(BUN), log2(eGFR), and log2(UA) were statistically significant. The diagnostic performance of s[IGFBP7]-2 h measured by the macro-averaged area under the receiver operating characteristic curve (AUC) was 0.948 ([95% CI], 0.853 to 1.000; P&lt;0.001). Discussion/Conclusion: The spleen and lung might be the main source of serum IGFBP7 and TIMP2 during AKI. The serum IGFBP7 value demonstrated good predictive accuracy for AKI following cardiac surgery within 2 h after ICU admission.
DOI: 10.25835/xfc2h3pg
title: Replication Package: "Pushed by Accident: A Mixed-Methods Study on Strategies of Handling Secret Information in Source Code Repositories"

description: Replication Package for the USENIX Security 2023 paper: “Pushed by Accident: A Mixed-Methods Study on Strategies of Handling Secret Information in Source Code Repositories”. The replication package includes: 1. The full survey and interview recruitment materials (including Upwork post and invitation as well as GitHub invite messages). 2. The survey screening questions and interview pre-survey questionnaire. 3. The survey and interview consent form. 4. The survey questionnaire and interview guide. 5. The survey and interview codebook. 6. The background section on version control
DOI: 10.5517/ccdc.csd.cc2bv14d
title: CCDC 2169973: Experimental Crystal Structure Determination

description: Related Article: Erich Ammon, Paul Heine, Miguel Andre Argüello Cordero, Stefan Lochbrunner, Alexander Villinger, Peter Ehlers, Peter Langer|2023|Org.Biomol.Chem.|21|4504|doi:10.1039/D3OB00407D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bv15f
title: CCDC 2169974: Experimental Crystal Structure Determination

description: Related Article: Erich Ammon, Paul Heine, Miguel Andre Argüello Cordero, Stefan Lochbrunner, Alexander Villinger, Peter Ehlers, Peter Langer|2023|Org.Biomol.Chem.|21|4504|doi:10.1039/D3OB00407D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cbkmx
title: CCDC 2184899: Experimental Crystal Structure Determination

description: Related Article: Kim T. Mortensen, Denedy S. Y. Wong, Thomas A. King, Hannah F. Sore, David R. Spring|2023|Org.Biomol.Chem.|21|4591|doi:10.1039/D3OB00351E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d7f8c
title: CCDC 2211672: Experimental Crystal Structure Determination

description: Related Article: Ayhan Altun, Elif Şenkuytu, Derya Davarcı|2023|Polyhedron|240|116458|doi:10.1016/j.poly.2023.116458
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5885
title: CCDC 2239386: Experimental Crystal Structure Determination

description: Related Article: Aykut Demirçalı, Tufan Topal|2023|J.Mol.Struct.|1288|135782|doi:10.1016/j.molstruc.2023.135782
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23452994
title: Supplementary Material for: Serum IGFBP7 deriving from spleen and lung could be used for early recognition of cardiac surgery-associated acute kidney injury

description: Introduction: The utility of arithmetic product of urinary tissue metalloproteinase inhibitor 2 (TIMP2) and insulin-like growth factor-binding protein 7 (IGFBP7) concentrations has been widely accepted on early diagnosis of acute kidney injury (AKI). However, which organ is the main source of those two factors and how the concentration of IGFBP7 and TIMP2 changed in serum during AKI still remain to be defined. Methods: In mice, gene transcription and protein levels of IGFBP7/TIMP2 in the heart, liver, spleen, lung, and kidney were measured in both ischaemia-reperfusion injury (IRI)- and cisplatin-induced AKI models. Serum IGFBP7 and TIMP2 levels were measured and compared in patients before cardiac surgery, and at inclusion (0 h), 2 h, 6 h and 12 h after Intensive Care Unit (ICU) admission, and compared with serum creatinine, blood urea nitrogen (BUN), estimated glomerular filtration rate (eGFR) and serum uric acid (UA). Results: In mouse IRI-AKI model, compared with the sham group, the expression levels of IGFBP7 and TIMP2 did not change in the kidney, but significantly upregulated in the spleen and lung. Compared with patients who did not develop AKI, the concentration of serum IGFBP7 at as early as 2 h after ICU admission (s[IGFBP7]-2 h) was significantly higher in patients who developed AKI. The relationships between s[IGFBP7]-2 h in AKI patients and log2(SCr), log2(BUN), log2(eGFR), and log2(UA) were statistically significant. The diagnostic performance of s[IGFBP7]-2 h measured by the macro-averaged area under the receiver operating characteristic curve (AUC) was 0.948 ([95% CI], 0.853 to 1.000; P&lt;0.001). Discussion/Conclusion: The spleen and lung might be the main source of serum IGFBP7 and TIMP2 during AKI. The serum IGFBP7 value demonstrated good predictive accuracy for AKI following cardiac surgery within 2 h after ICU admission.
DOI: 10.6084/m9.figshare.23452994.v1
title: Supplementary Material for: Serum IGFBP7 deriving from spleen and lung could be used for early recognition of cardiac surgery-associated acute kidney injury

description: Introduction: The utility of arithmetic product of urinary tissue metalloproteinase inhibitor 2 (TIMP2) and insulin-like growth factor-binding protein 7 (IGFBP7) concentrations has been widely accepted on early diagnosis of acute kidney injury (AKI). However, which organ is the main source of those two factors and how the concentration of IGFBP7 and TIMP2 changed in serum during AKI still remain to be defined. Methods: In mice, gene transcription and protein levels of IGFBP7/TIMP2 in the heart, liver, spleen, lung, and kidney were measured in both ischaemia-reperfusion injury (IRI)- and cisplatin-induced AKI models. Serum IGFBP7 and TIMP2 levels were measured and compared in patients before cardiac surgery, and at inclusion (0 h), 2 h, 6 h and 12 h after Intensive Care Unit (ICU) admission, and compared with serum creatinine, blood urea nitrogen (BUN), estimated glomerular filtration rate (eGFR) and serum uric acid (UA). Results: In mouse IRI-AKI model, compared with the sham group, the expression levels of IGFBP7 and TIMP2 did not change in the kidney, but significantly upregulated in the spleen and lung. Compared with patients who did not develop AKI, the concentration of serum IGFBP7 at as early as 2 h after ICU admission (s[IGFBP7]-2 h) was significantly higher in patients who developed AKI. The relationships between s[IGFBP7]-2 h in AKI patients and log2(SCr), log2(BUN), log2(eGFR), and log2(UA) were statistically significant. The diagnostic performance of s[IGFBP7]-2 h measured by the macro-averaged area under the receiver operating characteristic curve (AUC) was 0.948 ([95% CI], 0.853 to 1.000; P&lt;0.001). Discussion/Conclusion: The spleen and lung might be the main source of serum IGFBP7 and TIMP2 during AKI. The serum IGFBP7 value demonstrated good predictive accuracy for AKI following cardiac surgery within 2 h after ICU admission.
DOI: 10.5281/zenodo.7634676
title: xxxx xxx

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