cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/y99m-n390
title: IEEEXtreme 14: Making a Tangram

description: This dataset contains a total of 1766 submissions, with 8% correct solutions and 42% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/making-tangram/ See the included PDF document for details about the original challenge.
DOI: 10.15468/k9xtn4
title: Red list of flora and fauna of Mykolaiv region of Ukraine

description: The checklist consists of species of animals and plants that are rare or endangered in the territory of the Mykolaiv region of Ukraine. The checklist was implemented by the decision of the ninth session of the Mykolaiv Regional Council of the eighth convocation dated December 21, 2021 #27 "On the approval of the List of plant species subject to special protection in the territory of Mykolaiv Oblast and its Regulations" and order of the Ministry of Environmental Protection and Natural Resources of Ukraine dated September 28, 2020 No. 163 "On Approval of the List of Animal Species Subject to Special Protection in the Mykolaiv Oblast".
DOI: 10.6084/m9.figshare.13567002
title: An organelle-directed chemical ligation approach enables dual-color detection of mitophagy

description: Dysfunctional organelles and defective turnover of organelles are engaged in multiple human diseases, but are elusive to image with conventional organelle probes. To overcome this, we developed intra-mitochondrial CLICK to assess mitophagy (IMCLAM), using a pair of conventional ΔΨm probes, where each probe alone fails to track dysfunctional mitochondria. The <i>in situ</i> formed optical triad is stably trapped in mitochondria without resorting to ΔΨm. Utilizing an acidity-responsive ΔΨm probe, IMCLAM enabled fluorescence-on detection of mitophagy by sensing pH acidification upon delivery of mitochondria into lysosomes. Moreover, we applied IMCLAM to assay mitophagy induced by pharmacological compounds in living cells and wild-type zebrafish embryos. Thus, IMCLAM offers a simplified tool to study mitochondria and mitophagy and provide a basis for screening mitophagy-inducing compounds. <b>Abbreviations:</b> CCCP, carbonyl cyanide m-chlorophenylhydrazone; IMCLAM, intra-mitochondrial CLICK to assess mitophagy; ROX, X-rhodamine; SPAAC, stain-promoted azide-alkyne Click Chemistry; TPP, triphenylphosphonium.
DOI: 10.6084/m9.figshare.13567002.v2
title: An organelle-directed chemical ligation approach enables dual-color detection of mitophagy

description: Dysfunctional organelles and defective turnover of organelles are engaged in multiple human diseases, but are elusive to image with conventional organelle probes. To overcome this, we developed intra-mitochondrial CLICK to assess mitophagy (IMCLAM), using a pair of conventional ΔΨm probes, where each probe alone fails to track dysfunctional mitochondria. The <i>in situ</i> formed optical triad is stably trapped in mitochondria without resorting to ΔΨm. Utilizing an acidity-responsive ΔΨm probe, IMCLAM enabled fluorescence-on detection of mitophagy by sensing pH acidification upon delivery of mitochondria into lysosomes. Moreover, we applied IMCLAM to assay mitophagy induced by pharmacological compounds in living cells and wild-type zebrafish embryos. Thus, IMCLAM offers a simplified tool to study mitochondria and mitophagy and provide a basis for screening mitophagy-inducing compounds. <b>Abbreviations:</b> CCCP, carbonyl cyanide m-chlorophenylhydrazone; IMCLAM, intra-mitochondrial CLICK to assess mitophagy; ROX, X-rhodamine; SPAAC, stain-promoted azide-alkyne Click Chemistry; TPP, triphenylphosphonium.
DOI: 10.6084/m9.figshare.13567002.v1
title: An Organelle-Directed Chemical Ligation Approach Enables Dual-Color Detection of Mitophagy

description: Dysfunctional organelles and defective turnover of organelles are engaged in multiple human diseases, but are elusive to image with conventional organelle probes. To overcome this, we developed intra-mitochondrial CLICK to assess mitophagy (IMCLAM), using a pair of conventional ΔΨm probes, where each probe alone fails to track dysfunctional mitochondria. The <i>in situ</i> formed optical triad is stably trapped in mitochondria without resorting to ΔΨm. Utilizing an acidity-responsive ΔΨm probe, IMCLAM enabled fluorescence-on detection of mitophagy by sensing pH acidification upon delivery of mitochondria into lysosomes. Moreover, we applied IMCLAM to assay mitophagy induced by pharmacological compounds in living cells and wild-type zebrafish embryos. Thus, IMCLAM offers a simplified tool to study mitochondria and mitophagy and provide a basis for screening mitophagy-inducing compounds.
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DOI: 10.21227/6j11-p694
title: IEEEXtreme 14: Molecules

description: This dataset contains a total of 2365 submissions, with 2% correct solutions and 43% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/molecules/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.21431346
title: VIBRATION CHARACTERISTICS, CHEMICAL BONDS AND WEAK INTERACTIONS OF 4- AND 5-HYDROXYSALICYLIC ACID INVESTIGATED BY TERAHERTZ SPECTROSCOPY AND DENSITY FUNCTIONAL THEORY

description: The terahertz (THz) absorption spectra of 4- and 5-hydroxysalicylic acid were measured by terahertz time-domain spectroscopy (THz-TDS) in the range of 0.4-2.8 THz. The unit cells of both were calculated by density functional theory (DFT), and the theoretical simulation and experimental data were basically in agreement. To further interpret the origin of the characteristic absorption peaks, vibration characteristics and interactions of the unit cell model were analyzed by using potential energy distribution (PED) and interaction region indicator (IRI) method. The analysis indicated that the absorption peaks of 4- and 5-hydroxysalicylic acid were mainly derived from the vibration mode of dihedral angle torsion, and were closely related to the hydrogen bonds. And the intermolecular weak interaction of both were mainly dominated in quantity by van der Waals interaction. The results show that this is an effective solution to identify isomers and explain the formation mechanism of characteristic absorption peaks by using THz-TDS and combining PED and IRI methods.
DOI: 10.6084/m9.figshare.21431346.v1
title: VIBRATION CHARACTERISTICS, CHEMICAL BONDS AND WEAK INTERACTIONS OF 4- AND 5-HYDROXYSALICYLIC ACID INVESTIGATED BY TERAHERTZ SPECTROSCOPY AND DENSITY FUNCTIONAL THEORY

description: The terahertz (THz) absorption spectra of 4- and 5-hydroxysalicylic acid were measured by terahertz time-domain spectroscopy (THz-TDS) in the range of 0.4-2.8 THz. The unit cells of both were calculated by density functional theory (DFT), and the theoretical simulation and experimental data were basically in agreement. To further interpret the origin of the characteristic absorption peaks, vibration characteristics and interactions of the unit cell model were analyzed by using potential energy distribution (PED) and interaction region indicator (IRI) method. The analysis indicated that the absorption peaks of 4- and 5-hydroxysalicylic acid were mainly derived from the vibration mode of dihedral angle torsion, and were closely related to the hydrogen bonds. And the intermolecular weak interaction of both were mainly dominated in quantity by van der Waals interaction. The results show that this is an effective solution to identify isomers and explain the formation mechanism of characteristic absorption peaks by using THz-TDS and combining PED and IRI methods.
DOI: 10.6084/m9.figshare.19334221
title: Additional file 5 of Establishment and validation of a prognostic model based on HRR-related lncRNAs in colon adenocarcinoma

description: Additional file 5: Supplementary tables.
DOI: 10.6084/m9.figshare.19334221.v1
title: Additional file 5 of Establishment and validation of a prognostic model based on HRR-related lncRNAs in colon adenocarcinoma

description: Additional file 5: Supplementary tables.
DOI: 10.21227/xnp2-ra73
title: IEEEXtreme 13: Batchman and GCD

description: This dataset contains a total of 8367 submissions, with 1% correct solutions and 65% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/batchman-and-gcd/ See the included PDF document for details about the original challenge.
DOI: 10.15468/6aeejv
title: Peces de arrecifes coralinos de Isla Larga y Alcatraz, PN San Esteban, Venezuela

description: En este data set se presentan las especies de peces presentes en dos arrecifes coralinos del Parque Nacional San Esteban, ubicado en el estado Carabobo, Venezuela (Isla Larga y Alcatraz). Para caracterizar la comunidad íctica, se estimó la composición por especies de peces en cada una de las localidades bajo estudio, realizando censos visuales sobre transectas de 30 m de longitud paralelas a la línea de costa, ubicadas en diferentes estratos de profundidad. El método empleado para esta evaluación fue el de transecta con paradas de observación a intervalos de 5 m de distancia sobre la misma, con lo que se totalizan 7 puntos de muestreo por estrato de profundidad. En los dos arrecifes muestreados se identificaron 96 especies 49 generos y 27 familias (Acanthuridae, Aulostomidae, Carangidae, Chaenopsidae, Chaetodontidae, Cirrhitidae, Diodontidae, Gerreidae, Gobiidae, Haemulidae, Holocentridae, Labridae, Lutjanidae, Monacanthidae, Mullidae, Muraenidae, Ophichthidae, Opistognathidae, Ostraciidae, Pomacanthidae, Scaridae, Sciaenidae, Scombridae, Serranidae, Sparidae, Synodontidae y Tetraodontidae). En Isla Larga 70 especies de 23 familias; y para Alcatraz 83 especies de 25 familias. Los resultados revelan que los ambientes arrecifales del Parque Nacional San Esteban, presentan una alta riqueza íctica con relación a otros ambientes coralinos en Venezuela, como el PN Morrocoy.
DOI: 10.15468/ah85ra
title: Otter trawling fish assemblages at the Changyun Rise off central western Taiwan in 2017-2021

description: This dataset is derived from ten surveys with a total of 20 otter trawling sessions conducted at the Changyun Rise off the western coast of Taiwan between 2017-2018 and 2020-2021. The surveys were conducted at two sites, inshore (15-25 m depth) and offshore (40-50 m depth), utilizing a commercial otter trawling boat prior to the commencement of the offshore wind farm development. The dataset includes 8,026 individual fish, encompassing 51 families, 84 genera, and 128 taxa. Not only did the composition and abundance (ind./104m2) of fish species significantly differ between the inshore and offshore sites, but spatiotemporal variation was also observed in dominant fish species between 2017-2018 and 2020-2021. This dataset serves as a baseline for demersal fish prior to the development of the Changhua offshore wind farm. It offers critical information for subsequent environmental impact assessments, proposing mitigation measures, and establishing continuous monitoring networks.
DOI: 10.15468/y3guxz
title: Northern Barrier Marine Life of the Great Barrier Reef, Australia

description: Fish species collected specifically for the aquarium in trade in Cairns and occasionally, observations of rare species, or species observed outside their normal range recorded but not collected since 1990.
DOI: 10.3886/e187541
title: Replication code for: How to Construct Nationally Representative Firm Level Data from the Orbis Global Database: New Facts on SMEs and Aggregate Implications for Industry Concentration

description: We construct nationally representative firm-level longitudinal data for European countries using financial statements from the Orbis database. We validate our data by comparing its coverage and firm size distribution to official statistics. We showcase two applications to show the importance of firm representativeness in understanding macroeconomic outcomes. First, we show that small-and-medium-sized firms (SMEs) account for a large share of aggregate economic activity. Second, we document that firm representativeness is important for calculating industry concentration trends over time as the share of economic activity accounted by top firms in an industry changes with the firm samples used.<br><br>
DOI: 10.3886/e187541v1
title: Replication code for: How to Construct Nationally Representative Firm Level Data from the Orbis Global Database: New Facts on SMEs and Aggregate Implications for Industry Concentration

description: We construct nationally representative firm-level longitudinal data for European countries using financial statements from the Orbis database. We validate our data by comparing its coverage and firm size distribution to official statistics. We showcase two applications to show the importance of firm representativeness in understanding macroeconomic outcomes. First, we show that small-and-medium-sized firms (SMEs) account for a large share of aggregate economic activity. Second, we document that firm representativeness is important for calculating industry concentration trends over time as the share of economic activity accounted by top firms in an industry changes with the firm samples used.<br><br>
DOI: 10.6084/m9.figshare.14091343
title: Additional file 1 of Comprehensive analysis of immunoglobulin and clinical variables identifies functional linkages and diagnostic indicators associated with Behcet’s disease patients receiving immunomodulatory treatment

description: Additional file 1: Table S1 Abbreviations and full names of the laboratory tests used in this study. Table S2 Variables with significant differences between healthy controls and BD patients not treated with corticosteroids and immunosuppressants therapy. Table S3 Spearman correlation (r and P value) analysis of the immunoglobulin proteome in HCs and BD patients with and without immunomodulatory therapy. Table S4 Ratios with significant differences and fold change more than one between healthy controls and BD patients not treated with corticosteroids and immunosuppressants therapy in the discovery set. Table S5 Ratios with significant differences between BD patients not treated with corticosteroids and immunosuppressants therapy, healthy control and disease controls in both the discovery set and validation set. Fig. S1. Standard curves for the quantification of eight immunoglobulin isotypes. Fig. S2. The assay performance of the plasma microarray in the detection of the immunoglobulin proteome. Fig. S3. Correlation analysis between immunoglobulins and age in HC(A) and BD(B). Fig. S4. Beeswarm plots of immunoglobulin proteome expression between sex groups in HC(A) and BD(B). Fig. S5. Comparison of laboratory tests in HC and BD patients with and without immunomodulatory therapy.
DOI: 10.6084/m9.figshare.14091343.v1
title: Additional file 1 of Comprehensive analysis of immunoglobulin and clinical variables identifies functional linkages and diagnostic indicators associated with Behcet’s disease patients receiving immunomodulatory treatment

description: Additional file 1: Table S1 Abbreviations and full names of the laboratory tests used in this study. Table S2 Variables with significant differences between healthy controls and BD patients not treated with corticosteroids and immunosuppressants therapy. Table S3 Spearman correlation (r and P value) analysis of the immunoglobulin proteome in HCs and BD patients with and without immunomodulatory therapy. Table S4 Ratios with significant differences and fold change more than one between healthy controls and BD patients not treated with corticosteroids and immunosuppressants therapy in the discovery set. Table S5 Ratios with significant differences between BD patients not treated with corticosteroids and immunosuppressants therapy, healthy control and disease controls in both the discovery set and validation set. Fig. S1. Standard curves for the quantification of eight immunoglobulin isotypes. Fig. S2. The assay performance of the plasma microarray in the detection of the immunoglobulin proteome. Fig. S3. Correlation analysis between immunoglobulins and age in HC(A) and BD(B). Fig. S4. Beeswarm plots of immunoglobulin proteome expression between sex groups in HC(A) and BD(B). Fig. S5. Comparison of laboratory tests in HC and BD patients with and without immunomodulatory therapy.
DOI: 10.21227/7qpr-jf06
title: IEEEXtreme 14: Identifying Infected

description: This dataset contains a total of 5141 submissions, with 1% correct solutions and 9% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/identifying-infected/ See the included PDF document for details about the original challenge.
DOI: 10.21227/4qwj-4248
title: IEEEXtreme 14: Crafting Wooden Tables

description: This dataset contains a total of 10003 submissions, with 2% correct solutions and 86% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/crafting-wooden-tables/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.14091477
title: Additional file 4 of Systemic administration of β-glucan induces immune training in microglia

description: Additional file 4. Raw morphometric information for all cells analyzed in acute design, cortex and hippocampus regions. Statistical comparisons between experimental groups are also provided.
DOI: 10.6084/m9.figshare.14091477.v1
title: Additional file 4 of Systemic administration of β-glucan induces immune training in microglia

description: Additional file 4. Raw morphometric information for all cells analyzed in acute design, cortex and hippocampus regions. Statistical comparisons between experimental groups are also provided.
DOI: 10.6084/m9.figshare.14091486
title: Additional file 7 of Systemic administration of β-glucan induces immune training in microglia

description: Additional file 7. Raw morphometric information for all cells analyzed in preconditioning design, cortex and hippocampus regions. Statistical comparisons between experimental groups are also provided.
DOI: 10.6084/m9.figshare.14091486.v1
title: Additional file 7 of Systemic administration of β-glucan induces immune training in microglia

description: Additional file 7. Raw morphometric information for all cells analyzed in preconditioning design, cortex and hippocampus regions. Statistical comparisons between experimental groups are also provided.
DOI: 10.25376/hra.7800038
title: SHOCK-D-18-00340-1.pdf

description: Background: Neutrophil dysfunction plays an important role in inflammation-induced tissue injury. Previously,<br>we identified protein kinase C-d (PKCd) as a critical controller of neutrophil activation and trafficking but how PKCd is<br>regulated in inflammation has not been delineated. PKCd activity is regulated by tyrosine phosphorylation on multiple sites.<br>Tyrosine155 is a key regulator of apoptosis and gene expression, but its role in proinflammatory signaling is not known.<br>Methods: In-vitro studies – superoxide anion (O2<br> ) and neutrophil extracellular traps (NETs) were measured in bone<br>marrow neutrophils (BMN) isolated from wild type (WT) and PKCdY155F knock-in mice (PKCd tyrosine 155 ! phenylalanine).<br>Our novel 3D biomimetic microfluidic assay (bMFA) was used to delineate PKCd-mediated regulation of individual<br>steps in neutrophil adhesion and migration using WTand PKCdY155F BMN and mouse lung microvascular endothelial cells<br>(MLMVEC). In-vivo studies – WT and PKCdY155F knock-in mice underwent sham or cecal ligation and puncture surgery<br>and the lungs harvested 24 h post-surgery. Results: In vitro – PKCdY155F BMN had significantly reduced O2<br> and NETs<br>release compared with WT. WT BMN, but not PKCdY155F BMN, demonstrated significant adhesion and migration across<br>tumor necrosis factor-activated MLMVEC in bMFA. PKCd inhibition significantly reduced WT BMN adhesion and migration<br>under low shear and near bifurcations, but had no effect on PKCdY155F BMN. In vivo – mutation of PKCd tyrosine 155<br>significantly decreased neutrophil migration into the lungs of septic mice. Conclusions: PKCd tyrosine 155 is a key<br>phosphorylation site controlling proinflammatory signaling and neutrophil–endothelial cell interactions. These studies<br>provide mechanistic insights into PKCd regulation during inflammation.
DOI: 10.25376/hra.7800038.v1
title: SHOCK-D-18-00340-1.pdf

description: Background: Neutrophil dysfunction plays an important role in inflammation-induced tissue injury. Previously,<br>we identified protein kinase C-d (PKCd) as a critical controller of neutrophil activation and trafficking but how PKCd is<br>regulated in inflammation has not been delineated. PKCd activity is regulated by tyrosine phosphorylation on multiple sites.<br>Tyrosine155 is a key regulator of apoptosis and gene expression, but its role in proinflammatory signaling is not known.<br>Methods: In-vitro studies – superoxide anion (O2<br> ) and neutrophil extracellular traps (NETs) were measured in bone<br>marrow neutrophils (BMN) isolated from wild type (WT) and PKCdY155F knock-in mice (PKCd tyrosine 155 ! phenylalanine).<br>Our novel 3D biomimetic microfluidic assay (bMFA) was used to delineate PKCd-mediated regulation of individual<br>steps in neutrophil adhesion and migration using WTand PKCdY155F BMN and mouse lung microvascular endothelial cells<br>(MLMVEC). In-vivo studies – WT and PKCdY155F knock-in mice underwent sham or cecal ligation and puncture surgery<br>and the lungs harvested 24 h post-surgery. Results: In vitro – PKCdY155F BMN had significantly reduced O2<br> and NETs<br>release compared with WT. WT BMN, but not PKCdY155F BMN, demonstrated significant adhesion and migration across<br>tumor necrosis factor-activated MLMVEC in bMFA. PKCd inhibition significantly reduced WT BMN adhesion and migration<br>under low shear and near bifurcations, but had no effect on PKCdY155F BMN. In vivo – mutation of PKCd tyrosine 155<br>significantly decreased neutrophil migration into the lungs of septic mice. Conclusions: PKCd tyrosine 155 is a key<br>phosphorylation site controlling proinflammatory signaling and neutrophil–endothelial cell interactions. These studies<br>provide mechanistic insights into PKCd regulation during inflammation.
DOI: 10.6084/m9.figshare.21431547
title: RDD2022 - The multi-national Road Damage Dataset released through CRDDC'2022

description: Description

 The Road Damage Dataset, RDD2022, is released as a part of the Crowdsensing-based Road Damage Detection Challenge (CRDDC'2022), an IEEE BigData Cup. 
 It comprises <strong>47,420 road images</strong> from six countries, <strong>Japan, India, the Czech Republic, Norway, the United States, and China. </strong>
 The images have been annotated with more than <strong>55,000</strong> instances of road damage. 
 Four types of road damage, namely longitudinal cracks, transverse cracks, alligator cracks, and potholes, are captured in the dataset. 

Usage

 The annotated dataset is envisioned for developing <strong>deep learning</strong>-based methods to detect and classify road damage <strong>automatically. </strong>
 The <strong>municipalities and road agencies </strong>may utilize the RDD2022 dataset, and the models trained using RDD2022 for low-cost automatic monitoring of road conditions. 
 Further,<strong> computer vision and machine learning researchers </strong>may use the dataset to benchmark the performance of different algorithms for other image-based applications of the same type (classification, object detection, etc.). 

For further details, please refer to the CRDDC'2022 resources.
DOI: 10.5281/zenodo.10724496
title: Network metrics for Mediterranean farmers' understandings of "good soil management" and "good farmer" identity in the context of conservation agriculture

description: This dataset contains the network analysis metrics for coded concepts of "good soil management" and "good farmer identity" as listed among Mediterranean farmers in a study within the ConServeTerra project. Metrics are presented for overall networks as well as for networks of CA and conventional farmers only. Calculations of basic network metrics are also included.