cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/142105
title: TSG (Thermosalinograph) data collected during research cruise LMG1503 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142106
title: TSG (Thermosalinograph) data collected during research cruise LMG1503 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.8349978
title: Multilevel atlas comparisons reveal divergent evolution of the primate brain

description: Nifti files of 20 mammalian atlases modified into a Common Multilevel Segmentation. (See Figure 1 in Multilevel atlas comparisons reveal divergent evolution of the primate brain; https://www.pnas.org/doi/full/10.1073/pnas.2202491119#sec-3) These nifti files are based on the brain atlases from 18 mammalian species, that were published between the years 2013 and 2021 (see list). The Python script to re-segment the "original" atlases into the modified version (that is shared here) is also available: see Modify_atlases.py Each species folder contains 5 nifti files: 1 for each level of segmentation and 1 for the brain segmentation. The other txt files are the volumetric output extracted using AFNI on each nifti file. Please read the Readme.txt file to credit and cite accordingly all the authors.
description: {"references": ["https://www.pnas.org/doi/full/10.1073/pnas.2202491119#sec-3"]}
DOI: 10.5281/zenodo.8349977
title: Multilevel atlas comparisons reveal divergent evolution of the primate brain

description: Nifti files of 20 mammalian atlases modified into a Common Multilevel Segmentation. (See Figure 1 in Multilevel atlas comparisons reveal divergent evolution of the primate brain; https://www.pnas.org/doi/full/10.1073/pnas.2202491119#sec-3) These nifti files are based on the brain atlases from 18 mammalian species, that were published between the years 2013 and 2021 (see list). The Python script to re-segment the "original" atlases into the modified version (that is shared here) is also available: see Modify_atlases.py Each species folder contains 5 nifti files: 1 for each level of segmentation and 1 for the brain segmentation. The other txt files are the volumetric output extracted using AFNI on each nifti file. Please read the Readme.txt file to credit and cite accordingly all the authors.
description: {"references": ["https://www.pnas.org/doi/full/10.1073/pnas.2202491119#sec-3"]}
DOI: 10.7284/139158
title: Multiplexed data collected during research cruise LMG1505 using a USAP Winch instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139162
title: Fluorometer data collected during research cruise LMG1505 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139167
title: Meteorological Station data collected during research cruise LMG1505 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139160
title: Oxygen data collected during research cruise LMG1505 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139161
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG1505 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139168
title: Singlebeam Echosounder data collected during research cruise LMG1505 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139159
title: Water Temperature data collected during research cruise LMG1505 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139164
title: TSG (Thermosalinograph) data collected during research cruise LMG1505 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139169
title: TSG (Thermosalinograph) data collected during research cruise LMG1505 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6073/pasta/6835c0725b0f24a6c2f860a2290d78d7
title: Florida Bay Seagrass Canopy Temperature Data, Everglades National Park (FCE LTER), South Florida, USA, September 2000 - ongoing

description: Point measurements of hourly temperature readings at the canopy height of a seagrass bed collected during visits to TS/Ph 7a, TS/Ph8, TS/Ph9, TS/Ph10 and TS/Ph11. Graphic representation of seagrass status and trends monitoring data and other related information can be located at http://serc.fiu.edu/seagrass/!CDreport/DataHome.htm
DOI: 10.7284/139183
title: Multiplexed data collected during research cruise LMG1508 using a USAP Winch instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139187
title: Fluorometer data collected during research cruise LMG1508 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139193
title: Meteorological Station data collected during research cruise LMG1508 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139185
title: Oxygen data collected during research cruise LMG1508 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139186
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG1508 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139182
title: Radiometer data collected during research cruise LMG1508 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139194
title: Singlebeam Echosounder data collected during research cruise LMG1508 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139184
title: Water Temperature data collected during research cruise LMG1508 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139189
title: TSG (Thermosalinograph) data collected during research cruise LMG1508 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139195
title: TSG (Thermosalinograph) data collected during research cruise LMG1508 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.24150186
title: exampleData.csv

description: This is example data for the FMBC data availability proposal
DOI: 10.6084/m9.figshare.24150186.v1
title: exampleData.csv

description: This is example data for the FMBC data availability proposal
DOI: 10.7284/152074
title: Multiplexed data collected during research cruise LMG1601 using a USAP Winch instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152078
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise LMG1601 using a SeaBird SBE-911+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152083
title: Expendable Probe data collected during research cruise LMG1601 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152075
title: Fluorometer data collected during research cruise LMG1601 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152087
title: GNSS (Global Navigation Satellite System) data collected during research cruise LMG1601 using a Garmin 19x instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152079
title: Gyrocompass data collected during research cruise LMG1601 using a SGB Meridian instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152077
title: INS (Inertial Navigation System) data collected during research cruise LMG1601 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152084
title: Meteorological Station data collected during research cruise LMG1601 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152076
title: Oxygen data collected during research cruise LMG1601 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152080
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG1601 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152073
title: Radiometer data collected during research cruise LMG1601 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152085
title: Singlebeam Echosounder data collected during research cruise LMG1601 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152081
title: Water Temperature data collected during research cruise LMG1601 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152082
title: TSG (Thermosalinograph) data collected during research cruise LMG1601 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/152086
title: TSG (Thermosalinograph) data collected during research cruise LMG1601 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.6448595
title: DeepLabCut network trained to track mouse body parts during open field locomotion (top-down view)

description: DeepLabCut (https://github.com/DeepLabCut/) (Mathis et al., 2018; Nath et al., 2019) was used for tracking body parts of mice in an open field arena or in the rotarod. DeepLabCut 2.1.8.2 (local version on Windows with CPU, using the GUI) and 2.1.10.2 (google colab to train the network) were used using default parameters and the pretrained resnet50 network with imgaug augmentation. Frames were extracted with the k-means method and outlier frames with the jump method. <em>Open field: </em>20 images from 19 videos (10 or 30 fps) were extracted for a total of 380 labeled pictures. 8 body parts (snout, both ears, body center, both side laterals, tail base and tail end) and the 4 corners of the field arena were manually labeled and linked to each other using skeletons. A neural network was trained using these images for 170K iterations. 20 outlier frames were extracted from each video and relabeled. An additional 20 images from 19 videos with different recording conditions were labeled. The network was then refined for 210K iterations (from scratch), yielding a train error of 3.33 pixels and a test error of 8.83 pixels (with a likelihood p-cutoff of 0.6). This process was repeated a second time (using an additional 20 images from 15 new videos) to improve the pixel error; to a final 400 K iterations (train error: 2.65, test error: 3.71). 67 videos from 5 different experiments were analyzed on the final network.<em> </em> <em>Used to analyze videos for a publication (Labouesse et al., Nature Communications 2023)</em>
DOI: 10.5281/zenodo.6448594
title: DeepLabCut network trained to track mouse body parts during open field locomotion (top-down view)

description: DeepLabCut (https://github.com/DeepLabCut/) (Mathis et al., 2018; Nath et al., 2019) was used for tracking body parts of mice in an open field arena or in the rotarod. DeepLabCut 2.1.8.2 (local version on Windows with CPU, using the GUI) and 2.1.10.2 (google colab to train the network) were used using default parameters and the pretrained resnet50 network with imgaug augmentation. Frames were extracted with the k-means method and outlier frames with the jump method. <em>Open field: </em>20 images from 19 videos (10 or 30 fps) were extracted for a total of 380 labeled pictures. 8 body parts (snout, both ears, body center, both side laterals, tail base and tail end) and the 4 corners of the field arena were manually labeled and linked to each other using skeletons. A neural network was trained using these images for 170K iterations. 20 outlier frames were extracted from each video and relabeled. An additional 20 images from 19 videos with different recording conditions were labeled. The network was then refined for 210K iterations (from scratch), yielding a train error of 3.33 pixels and a test error of 8.83 pixels (with a likelihood p-cutoff of 0.6). This process was repeated a second time (using an additional 20 images from 15 new videos) to improve the pixel error; to a final 400 K iterations (train error: 2.65, test error: 3.71). 67 videos from 5 different experiments were analyzed on the final network.<em> </em> <em>Used to analyze videos for a publication (Labouesse et al., Nature Communications 2023)</em>
DOI: 10.7284/139276
title: Multiplexed data collected during research cruise LMG1603 using a USAP Winch instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139280
title: Fluorometer data collected during research cruise LMG1603 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139286
title: Meteorological Station data collected during research cruise LMG1603 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139278
title: Oxygen data collected during research cruise LMG1603 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139279
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG1603 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139275
title: Radiometer data collected during research cruise LMG1603 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139287
title: Singlebeam Echosounder data collected during research cruise LMG1603 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139277
title: Water Temperature data collected during research cruise LMG1603 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139282
title: TSG (Thermosalinograph) data collected during research cruise LMG1603 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139288
title: TSG (Thermosalinograph) data collected during research cruise LMG1603 using a SeaBird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139007
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise LMG1609 using a Hawaii UHDAS instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139013
title: Expendable Probe data collected during research cruise LMG1609 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139010
title: Fluorometer data collected during research cruise LMG1609 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139016
title: Meteorological Station data collected during research cruise LMG1609 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139008
title: Oxygen data collected during research cruise LMG1609 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139009
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG1609 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139005
title: Radiometer data collected during research cruise LMG1609 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139017
title: Singlebeam Echosounder data collected during research cruise LMG1609 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139006
title: Water Temperature data collected during research cruise LMG1609 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139025
title: Expendable Probe data collected during research cruise LMG1610 using a Sippican MK21 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139022
title: Fluorometer data collected during research cruise LMG1610 using a WETLabs ECO-FL instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139028
title: Meteorological Station data collected during research cruise LMG1610 using a USAP RVDAS Metstation instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139020
title: Oxygen data collected during research cruise LMG1610 using a AANDERAA Optode 3975 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139021
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise LMG1610 using a LDEO pCO2 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.8350051
title: Thermal response in H. erectus

description: The data is a collection of biochemical (metabolites, antioxidant defence enzymes, esterese activity) and phyisiological (oxygen consumption) indicators measured in juvenile Hippocampus erectus duraing exposure to the following magnitudes and rates of thermal increase: i) an abrupt increment of 4 °C from 26 to 30 °C (Ab30); ii) an abrupt increment of 7 °C from 26 to 33 °C (Ab33); iii) a gradual increment of 4 °C from 26 to 30 °C (Gr30); iv) a gradual increment of 7 °C from 26 to 33 °C (Gr33); and v) a control kept constant at 26 °C (Control).
DOI: 10.5281/zenodo.8350050
title: Thermal response in H. erectus

description: The data is a collection of biochemical (metabolites, antioxidant defence enzymes, esterese activity) and phyisiological (oxygen consumption) indicators measured in juvenile Hippocampus erectus duraing exposure to the following magnitudes and rates of thermal increase: i) an abrupt increment of 4 °C from 26 to 30 °C (Ab30); ii) an abrupt increment of 7 °C from 26 to 33 °C (Ab33); iii) a gradual increment of 4 °C from 26 to 30 °C (Gr30); iv) a gradual increment of 7 °C from 26 to 33 °C (Gr33); and v) a control kept constant at 26 °C (Control).
DOI: 10.7284/139018
title: Radiometer data collected during research cruise LMG1610 using a Biospherical GUV-2511 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/139029
title: Singlebeam Echosounder data collected during research cruise LMG1610 using a Knudsen 3260 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5519/qd.chrpp4zg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (14 records)
DOI: 10.7284/139019
title: Water Temperature data collected during research cruise LMG1610 using a SeaBird SBE-38 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.8342810
title: Lipid nanoparticle structure and delivery route during pregnancy dictates mRNA potency, immunogenicity, and maternal and fetal outcomes

description: Raw data used for analysis
DOI: 10.5281/zenodo.8342809
title: Lipid nanoparticle structure and delivery route during pregnancy dictates mRNA potency, immunogenicity, and maternal and fetal outcomes

description: Raw data used for analysis
DOI: 10.5519/qd.fkfmisim
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (31 records)