cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25666/dataubfc-2018-10-09
title: Paleoparasitological analysis in Carspach - Kilianstollen
title: Analyse paléoparasitologique de Carspach - Kilianstollen

description: Paleoparasitological data from the study of three samples taken from the remains of German soldiers from the First World War. The soldiers were found in the rubble of the military structure (Kilianstollen) that collapsed on March 18, 1918.
description: Données paléoparasitologiques issues de l'étude de trois échantillons prélevés sur les restes de soldats allemands de la première guerre mondiale. Les soldats ont été retrouvés dans les décombres de la structure militaire (Kilianstollen) effondrée le 18 mars 1918.
description: Audience: Research
description: UpdatePeriodicity: as needed
description: Observational data: Extraction par méthode RHM (Dufour & Le Bailly, 2013) Observation en microscopie optique
DOI: 10.25666/dataubfc-2017-03-20-07
title: Pollen analysis - Alise-Sainte-Reine (F-21), Alésia 97
title: Analyse pollinique - Alise-Sainte-Reine (F-21), Alésia 97

description: Archaeological site: ditch in the alluvial plain. Only one palynological sample.
description: Site archéologique, fossé dans la plaine alluviale. Un seul échantillon lu.
description: Audience: Research
description: UpdatePeriodicity: no update
description: Observational data: Echantillons prélevés sur une coupe d'un fossé de drainage. Préparation physico-chimique à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.25666/dataubfc-2019-07-10-04
title: Pollen analysis - Andelot-en-Montagne (F-39), Les Chapeaux - Pré à Faivre
title: Analyse pollinique - Andelot-en-Montagne (F-39), Les Chapeaux - Pré à Faivre

description: Current site, sheep meadow. 4 palynological samples. Samples of sheep dungs (3 in the meadow + 1 in the stable) for comparison with the coproliths of the Neolithic site of Clairvaux.
description: Site actuel, prairie à moutons. 4 échantillons lus. Echantillons de crottes de mouton (3 au pré + 1 en étable) pour comparaison à les coprolithes du site néolithique de Clairvaux.
description: Audience: Research
description: UpdatePeriodicity: no update
description: Observational data: Echantillons prélevés sur les sites (prairie, étable). Préparation physico-chimique à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.25666/dataubfc-2020-01-09
title: Pollen analysis - Beffia (F-39), Tumulus 2001, En Magne ou sur Magne
title: Analyse pollinique - Beffia (F-39), Tumulus 2001, En Magne ou sur Magne

description: 5 palynological samples at the heart of the main burial ground. Almost sterile.
description: 5 échantillons au cœur de la sépulture principale. Stériles ou presque.
description: Audience: Research
description: Experimental data: Echantillons prélevés lors des fouilles archéologiques. Préparation physico-chimique à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.18112/openneuro.ds004466.v1.0.0
title: Mapping the Connectome of Synaesthesia: An Open Access MRI Dataset
DOI: 10.25666/dataubfc-2017-01-25-02
title: Pollen analysis - Fontenu (F-39), Lac de Chalain, îlot David, 30 F/G
title: Analyse pollinique - Fontenu (F-39), Lac de Chalain, îlot David, 30 F/G

description: Archaeological site. Lake dwelling. 18 palynological samples.
description: Site archéologique, site palafittique. 18 échantillons lus.
description: Audience: Research
description: UpdatePeriodicity: no update
description: Label: ZAAJ (Zone Atelier Arc Jurassien)
description: Observational data: Echantillons prélevés lors des fouilles archéologiques. Préparation physico-chimique, méthode dite NaOH. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.25666/dataubfc-2017-04-25-02
title: Pollen analysis - Glux-en-Glenne (F-58), Bibracte, Porte du Rebout, "bacs à fleurs"
title: Analyse pollinique - Glux-en-Glenne (F-58), Bibracte, Porte du Rebout, "bacs à fleurs"

description: Archaeological site: section in the rampart. 12 palynological samples: 4 positive.
description: Site archéologique: coupe dans le rempart. 12 échantillons lus : 4 positifs.
description: Audience: Research
description: UpdatePeriodicity: no update
description: Observational data: Echantillons prélevés lors des fouilles archéologiques. Préparation physico-chimique à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.25666/dataubfc-2017-04-20-02
title: Pollen analysis - Isle-et-Bardais (F-03), Forêt de Tronçais "Petits jardins"
title: Analyse pollinique - Isle-et-Bardais (F-03), Forêt de Tronçais "Petits jardins"

description: Archaeological excavations. 18 palynological samples in two series: 2002-2003 (positive) and 2004 (negative).
description: Site archéologique ; fouilles. 18 échantillons lus en deux séries : 2002-2003 (positifs) et 2004 (stériles).
description: Audience: Research
description: UpdatePeriodicity: no update
description: Observational data: Echantillons prélevés lors des fouilles archéologiques. Préparation physico-chimique à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.6084/m9.figshare.22041257
title: Alignment S1, Roary – E. chengduensis core-gene alignment

description: For this core-gene alignment, all <em>Enterobacter</em> references from Feng Y. <em>et al.</em> were used in addition to<em> E. chengduensis </em>isolates. <br> <br> Feng Y, Hu Y, Zong Z. Reexamining the Association of AmpC variants with Enterobacter species in the context of updated taxonomy. Antimicrob Agents Chemother. 2021;65(12):e0159621. https://doi.org/10.1128/AAC.01596-21.
DOI: 10.5281/zenodo.7614815
title: ReaLSAT, a global dataset of reservoir and lake surface area variations

description: Reservoir and Lake Surface Area Timeseries (ReaLSAT) dataset provides an unprecedented reconstruction of surface area variations of lakes and reservoirs at a global scale using Earth Observation (EO) data and novel machine learning techniques. The dataset provides monthly scale surface area variations (1984 to 2020) of 681,137 water bodies below 50°N and sizes greater than 0.1 square kilometers. The dataset contains the following files: 1) ReaLSAT.zip: A shapefile that contains the reference shape of waterbodies in the dataset. 2) monthly_timeseries.zip: contains one CSV file for each water body. The CSV file provides monthly surface area variation values. The CSV files are stored in a subfolder corresponding to each 10 degree by 10 degree cell. For example, monthly_timeseries_60_-50 folders contain CSV files of lakes that lie between 60 E and 70 E longitude, and 50S and 40 S. 3) monthly_shapes_&lt;bottom_left_lon&gt;_&lt;bottom_left_lat&gt;.zip: contains a geotiff for each water body that lie within the 10 degree by 10 degree cell. Please refer to the visualization notebook on how to use these geotiffs. 4) evaluation_data.zip: contains the random subsets of the dataset used for evaluation. The zip file contains a README file that describes the evaluation data. 6) generate_realsat_timeseries.ipynb: a Google Colab notebook that provides the code to generate timerseries and surface extent maps for any waterbody. Please refer to the following papers to learn more about the processing pipeline used to create ReaLSAT dataset: [1] Khandelwal, Ankush, Anuj Karpatne, Praveen Ravirathinam, Rahul Ghosh, Zhihao Wei, Hilary A. Dugan, Paul C. Hanson, and Vipin Kumar. "ReaLSAT, a global dataset of reservoir and lake surface area variations." <em>Scientific data</em> 9, no. 1 (2022): 1-12. [2] Khandelwal, Ankush. "ORBIT (Ordering Based Information Transfer): A Physics Guided Machine Learning Framework to Monitor the Dynamics of Water Bodies at a Global Scale." (2019). <strong>Version Updates</strong> Version 2.0: - extends the datasets to 2020. - provides geotiffs instead of shapefiles for individual lakes to reduce dataset size. - provides a notebook to visualize the updated dataset. Version 1.4: added 1120 large lakes to the dataset and removed partial lakes that overlapped with these large lakes. Version 1.3: fixed visualization related bug in generate_realsat_timeseries.ipynb Version 1.2: added a Google Colab notebook that provides the code to generate timerseries and surface extent maps for any waterbody in ReaLSAT database.
DOI: 10.5281/zenodo.4118463
title: ReaLSAT, a global dataset of reservoir and lake surface area variations

description: Reservoir and Lake Surface Area Timeseries (ReaLSAT) dataset provides an unprecedented reconstruction of surface area variations of lakes and reservoirs at a global scale using Earth Observation (EO) data and novel machine learning techniques. The dataset provides monthly scale surface area variations (1984 to 2020) of 681,137 water bodies below 50°N and sizes greater than 0.1 square kilometers. The dataset contains the following files: 1) ReaLSAT.zip: A shapefile that contains the reference shape of waterbodies in the dataset. 2) monthly_timeseries.zip: contains one CSV file for each water body. The CSV file provides monthly surface area variation values. The CSV files are stored in a subfolder corresponding to each 10 degree by 10 degree cell. For example, monthly_timeseries_60_-50 folders contain CSV files of lakes that lie between 60 E and 70 E longitude, and 50S and 40 S. 3) monthly_shapes_&lt;bottom_left_lon&gt;_&lt;bottom_left_lat&gt;.zip: contains a geotiff for each water body that lie within the 10 degree by 10 degree cell. Please refer to the visualization notebook on how to use these geotiffs. 4) evaluation_data.zip: contains the random subsets of the dataset used for evaluation. The zip file contains a README file that describes the evaluation data. 6) generate_realsat_timeseries.ipynb: a Google Colab notebook that provides the code to generate timerseries and surface extent maps for any waterbody. Please refer to the following papers to learn more about the processing pipeline used to create ReaLSAT dataset: [1] Khandelwal, Ankush, Anuj Karpatne, Praveen Ravirathinam, Rahul Ghosh, Zhihao Wei, Hilary A. Dugan, Paul C. Hanson, and Vipin Kumar. "ReaLSAT, a global dataset of reservoir and lake surface area variations." <em>Scientific data</em> 9, no. 1 (2022): 1-12. [2] Khandelwal, Ankush. "ORBIT (Ordering Based Information Transfer): A Physics Guided Machine Learning Framework to Monitor the Dynamics of Water Bodies at a Global Scale." (2019). <strong>Version Updates</strong> Version 2.0: - extends the datasets to 2020. - provides geotiffs instead of shapefiles for individual lakes to reduce dataset size. - provides a notebook to visualize the updated dataset. Version 1.4: added 1120 large lakes to the dataset and removed partial lakes that overlapped with these large lakes. Version 1.3: fixed visualization related bug in generate_realsat_timeseries.ipynb Version 1.2: added a Google Colab notebook that provides the code to generate timerseries and surface extent maps for any waterbody in ReaLSAT database.
DOI: 10.6084/m9.figshare.22041239
title: Overwinter_Queens_JAE.xlsx

description: A comparative experiment between constant cold storage regimes vs. fluctuative regime while recording the number of days survived in extended cold storage in laboratory settings. <br> Numerical Data Set: Year, Initial Weight, Days, Size, Lipid, and Colony Age Categorical Data Set: Colony Source, Species, Initial Weight Category, Treatment, Size Category, and Colony Age Category
DOI: 10.6084/m9.figshare.22041239.v1
title: Overwinter_Queens_JAE.xlsx

description: A comparative experiment between constant cold storage regimes vs. fluctuative regime while recording the number of days survived in extended cold storage in laboratory settings. <br> Numerical Data Set: Year, Initial Weight, Days, Size, Lipid, and Colony Age Categorical Data Set: Colony Source, Species, Initial Weight Category, Treatment, Size Category, and Colony Age Category
DOI: 10.5281/zenodo.7612678
title: Dataset related to article "Why are they not coming back? A single-center follow-up study on oncological women oocyte's storing for fertility preservation"

description: This record contains data related to article “Why are they not coming back? A single-center follow-up study on oncological women oocyte's storing for fertility preservation" Abstract <strong>Introduction: </strong>Oocyte cryopreservation is a valid option for female cancer patients to preserve fertility. The number of patients undergoing fertility preservation (FP) cycles has increased over the past years. Nevertheless, the rates of patients returning to use their cryopreserved material have shown to be considerably low, ranging from 5-8%, but significant data regarding the reasons of such low return rates are scarce. <strong>Methods: </strong>This study is a single-center follow-up retrospective study evaluating the return rate of oncological women who underwent FP at a tertiary care Fertility Center and assessing the reasons influencing the patients who did not return. Data about patients who returned to attempt pregnancy were retrieved from internal registries. Non-returned patients were assessed with a standardized phone survey investigating health condition, marital status and family projects, spontaneous conceptions, and the reasons why they had not returned to use their gametes. A univariate analysis between returned and non-returned patients was performed. <strong>Results: </strong>Of the 397 patients who received counseling about FP, 171 (43.1%) underwent oocyte cryopreservation between 2001 and 2017. Nine (5%) died, and 17 (10%) were lost at follow-up. A total of 20 patients (11.7%) returned and 125 did not. In the non-returned group, 37 (29.6%) did not have a partner, 10 (8%) had a previous spontaneous conception, and 15 (12%) had recurrent malignancy at the time of follow-up. In the univariate analysis, younger age at freezing (31.8±6.2 vs. 35.2±4.7; p 0.018), lack of a partner (p 0.002), type of cancer (other than breast cancer; p 0.024) were the significant factors in the non-returned group. As for the personal reason for not coming back, patients mainly answered as follows: lack of a partner (29, 23.2%), the desire for spontaneous motherhood (24, 19.2%), previous spontaneous pregnancies after FP procedures (16, 12.8%), and still ongoing hormonal therapy for breast cancer (13, 10.4%). All patients confirmed their will to keep the storage of their oocytes. <strong>Discussion: </strong>The impact of a cancer diagnosis on a woman's maternal desire, sentimental status and life priorities should be studied more thoroughly. Studies investigating hormonal therapy suppression in breast cancer patients seeking pregnancy should be encouraged. <strong>Clinical trial registration: </strong>https://clinicaltrials.gov, identifier NCT05223764.
DOI: 10.5281/zenodo.7612677
title: Dataset related to article "Why are they not coming back? A single-center follow-up study on oncological women oocyte's storing for fertility preservation"

description: This record contains data related to article “Why are they not coming back? A single-center follow-up study on oncological women oocyte's storing for fertility preservation" Abstract <strong>Introduction: </strong>Oocyte cryopreservation is a valid option for female cancer patients to preserve fertility. The number of patients undergoing fertility preservation (FP) cycles has increased over the past years. Nevertheless, the rates of patients returning to use their cryopreserved material have shown to be considerably low, ranging from 5-8%, but significant data regarding the reasons of such low return rates are scarce. <strong>Methods: </strong>This study is a single-center follow-up retrospective study evaluating the return rate of oncological women who underwent FP at a tertiary care Fertility Center and assessing the reasons influencing the patients who did not return. Data about patients who returned to attempt pregnancy were retrieved from internal registries. Non-returned patients were assessed with a standardized phone survey investigating health condition, marital status and family projects, spontaneous conceptions, and the reasons why they had not returned to use their gametes. A univariate analysis between returned and non-returned patients was performed. <strong>Results: </strong>Of the 397 patients who received counseling about FP, 171 (43.1%) underwent oocyte cryopreservation between 2001 and 2017. Nine (5%) died, and 17 (10%) were lost at follow-up. A total of 20 patients (11.7%) returned and 125 did not. In the non-returned group, 37 (29.6%) did not have a partner, 10 (8%) had a previous spontaneous conception, and 15 (12%) had recurrent malignancy at the time of follow-up. In the univariate analysis, younger age at freezing (31.8±6.2 vs. 35.2±4.7; p 0.018), lack of a partner (p 0.002), type of cancer (other than breast cancer; p 0.024) were the significant factors in the non-returned group. As for the personal reason for not coming back, patients mainly answered as follows: lack of a partner (29, 23.2%), the desire for spontaneous motherhood (24, 19.2%), previous spontaneous pregnancies after FP procedures (16, 12.8%), and still ongoing hormonal therapy for breast cancer (13, 10.4%). All patients confirmed their will to keep the storage of their oocytes. <strong>Discussion: </strong>The impact of a cancer diagnosis on a woman's maternal desire, sentimental status and life priorities should be studied more thoroughly. Studies investigating hormonal therapy suppression in breast cancer patients seeking pregnancy should be encouraged. <strong>Clinical trial registration: </strong>https://clinicaltrials.gov, identifier NCT05223764.
DOI: 10.6084/m9.figshare.22041293
title: MLTree S1, IQ-TREE – Maximum likelihood phylogenetic tree of E. chengduensis

description: Maximum likelihood phylogenetic tree of <em>E. chengduensis </em>[IQ-TREE output].
DOI: 10.6084/m9.figshare.22041293.v1
title: MLTree S1, IQ-TREE – Maximum likelihood phylogenetic tree of E. chengduensis

description: Maximum likelihood phylogenetic tree of <em>E. chengduensis </em>[IQ-TREE output].
DOI: 10.5281/zenodo.7616026
title: Raw Data for the article: Clinical outcomes of transjugular intrahepatic portosystemic shunt with PTFE-covered stents after liver transplantation and technical results in split and whole liver graft recipients

description: <strong>Objectives: </strong>To assess the outcomes of transjugular intrahepatic portosystemic shunt (TIPS) creation using PTFE-covered stents in liver transplant (LT) recipients and to analyze the technical result of TIPS creation in split grafts (SG) compared with whole liver grafts (WG). <strong>Methods and materials: </strong>Single-center, retrospective study, analyzing LT patients who underwent TIPS using PTFE-covered stents. Clinical and technical variables were analyzed. <strong>Results: </strong>Between 2005 and 2021, TIPS was created using PTFE-covered stents in 48 LT patients at a median of 43 months (range, 0.5-192) after LT. TIPS indications were refractory ascites (RA) in 33 patients (69%), variceal bleeding (VB) in 9 patients (19%), others in 6 (12%). Ten patients (21%) received a SG. Technical success rate was 100% in both groups: in two WG recipients, (5%) a second attempt was required. An unconventional approach (combined transhepatic or transplenic access) was needed in 2 WG (5%) and 2 SG recipients (20%). Two procedure-related death occurred in the WG group. After a median follow-up of 22 months (range, 0,1-144), 16 patients (48%) in the RA group did not require post-TIPS paracentesis, in the VB group rebleeding occurred in 3 patients (33%). Fifteen patients (31%) underwent TIPS revision. Overt hepatic encephalopathy occurred in 14 patients (29%). Patient survival at 6 months, 1 year, and 3 years was 77%, 66%, and 43%, respectively. <strong>Conclusions: </strong>The feasibility and safety of TIPS creation in SG are comparable to that of WG. TIPS creation using PTFE-covered stents represents a viable option to treat portal hypertensive complications in LT recipients.
DOI: 10.5281/zenodo.7616025
title: Raw Data for the article: Clinical outcomes of transjugular intrahepatic portosystemic shunt with PTFE-covered stents after liver transplantation and technical results in split and whole liver graft recipients

description: <strong>Objectives: </strong>To assess the outcomes of transjugular intrahepatic portosystemic shunt (TIPS) creation using PTFE-covered stents in liver transplant (LT) recipients and to analyze the technical result of TIPS creation in split grafts (SG) compared with whole liver grafts (WG). <strong>Methods and materials: </strong>Single-center, retrospective study, analyzing LT patients who underwent TIPS using PTFE-covered stents. Clinical and technical variables were analyzed. <strong>Results: </strong>Between 2005 and 2021, TIPS was created using PTFE-covered stents in 48 LT patients at a median of 43 months (range, 0.5-192) after LT. TIPS indications were refractory ascites (RA) in 33 patients (69%), variceal bleeding (VB) in 9 patients (19%), others in 6 (12%). Ten patients (21%) received a SG. Technical success rate was 100% in both groups: in two WG recipients, (5%) a second attempt was required. An unconventional approach (combined transhepatic or transplenic access) was needed in 2 WG (5%) and 2 SG recipients (20%). Two procedure-related death occurred in the WG group. After a median follow-up of 22 months (range, 0,1-144), 16 patients (48%) in the RA group did not require post-TIPS paracentesis, in the VB group rebleeding occurred in 3 patients (33%). Fifteen patients (31%) underwent TIPS revision. Overt hepatic encephalopathy occurred in 14 patients (29%). Patient survival at 6 months, 1 year, and 3 years was 77%, 66%, and 43%, respectively. <strong>Conclusions: </strong>The feasibility and safety of TIPS creation in SG are comparable to that of WG. TIPS creation using PTFE-covered stents represents a viable option to treat portal hypertensive complications in LT recipients.
DOI: 10.6073/pasta/28a01293b4e1e47f9477118bd360ce4c
title: Summer soil temperature and moisture at the Anaktuvuk River Unburned site from 2010 to 2013

description: Soil moisture and temperature were recorded at the Anaktuvuk River burn area during the summers from 2010 to 2013. Six sensors were deployed and measured temperature on half-hourly intervals over the summer and into the fall depending on battery function. Sensors were place in a hexagonal shape around a central datalogger. Note that over time sensor depths changed due to frost heave and other environmental factors. All data contained should be treated as suspect where sensors may have been at surface. These sensors were removed August 23, 2013, no replacement sensors were installed.
DOI: 10.6073/pasta/14e1c3a85a6f32b1a62e45c3816f5874
title: Summer soil temperature and moisture at the Anaktuvuk River Severely burned site from 2010 to 2013

description: Soil moisture and temperature were recorded at the Anaktuvuk River burn area during the summers from 2010 to 2013. Six sensors were deployed and measured temperature on half-hourly intervals over the summer and into the fall depending on battery function. Sensors were place in a hexagonal shape around a central data logger. Note that over time sensor depths changed due to frost heave and other environmental factors. All data contained should be treated as suspect where sensors may have been at surface. These sensors were removed August 20, 2013, no replacement sensors were installed.