cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/mc50g-ec439
title: Vibrio fischeri

description: Session notes: Vibrio fischeri flgP-deletion flagella, binned 4x total then filtered 0.28 (= 4.6nm resolution cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-18</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Vibrio fischeri</p>
<strong>Strain:</strong> ES114</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-12-18-5_slicer5575.jpg: Extracellular Vesicle mba2011-12-18-5_slicer5576.jpg: Pilli
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-18-5/rawdata/</p>11dec18a_DflgPVFisheri_0026.st,  Tilt Series (Pixel Size 0.632 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11dec18a_DflgPVFisheri_0026.rec,  Reconstruction (Pixel Size 0.644 nm), 89.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4gvk8-n3t77
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-20</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-03-20-9_slicer5456.jpg: Secretion system
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-9/rawdata/</p>12mar20b_fliL_0025.st,  Tilt Series (Pixel Size 20.136 nm), 743.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12mar20b_fliL_0025.rec,  Reconstruction (Pixel Size 1.036 nm), 57.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/905hp-rvt84
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-15_slicer5161.jpg: Chemoreceptor array
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-15/rawdata/</p>12sep28a_cjj0413_0022.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
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        12sep28a_cjj0413_0022.rec,  Reconstruction (Pixel Size 1.12 nm), 45.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hnacm-52248
title: Hylemonella gracilis

description: Session notes:  Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2008-11-18</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> ATCC 19624</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2008-11-18-1_slicer6124.jpg: Flagella motor mba2008-11-18-1_slicer6125.jpg: REZ
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2008-11-18-1/rawdata/</p>08nov18a_b620_1_019.st,  Tilt Series (Pixel Size 0.632 nm), 1.5 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov18a_b620_1_019.rec,  Reconstruction (Pixel Size 1.277 nm), 35.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f0wjj-9y854
title: Project: peptidoglycan

description: Session notes: First round of data collection on fragmented sacculi Tilt series notes: notes Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2008-12-06</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 6.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2008-12-06-3/rawdata/</p>08dec06b_grid5_042.mrc,  Tilt Series (Pixel Size 0.782 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08dec06b_grid5_042_1.rec,  Reconstruction (Pixel Size 0.782 nm), 1.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/edd70-fcd66
title: Bacillus subtilis

description: Session notes: B. subtilis L-forms number 13 Tilt series notes: Comet-like cell with what looks like an open-ended peptidoglycan sheath Tomogram notes: Ragged ended tail to the bacterial peptidoglycan sheath.
description: <strong>Tilt Series Date:</strong> 2010-12-01</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-12-01-1/rawdata/</p>10dec01a_Lforms2_015.st,  Tilt Series (Pixel Size 1.192 nm), 2.0 GB  
        
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        10dec01a_Lforms2_015.rec,  Reconstruction (Pixel Size 2.384 nm), 248.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.zf8xnd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago lanceolata",
 "Country is Botswana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044071-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqgf39
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leporacanthicus triactis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044069-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/92xd6-ys864
title: Salmonella typhimurium

description: Session notes: Salmonella fliHIJ knockout minicells Tilt series notes:  Tomogram notes: Small minicell; no flagella
description: <strong>Tilt Series Date:</strong> 2011-02-03</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-03-8/rawdata/</p>11feb03a_fliHIJ_002.st,  Tilt Series (Pixel Size 0.774 nm), 721.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-03-8/rawdata/11feb03a_fliHIJ_002.st"
        > <i class="download icon"></i> Download </a></p>

        11feb03a_fliHIJ_002.rec,  Reconstruction (Pixel Size 1.548 nm), 45.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3fvsd-42808
title: Bacillus subtilis

description: Session notes: Bacillus subtilis PG&TA sacculi, 15 minute achromopeptidase digest Tilt series notes: Bacillus cell pole in a grid hole. Tomogram notes: Cell pole sacculus, nothing terribly interesting looking.
description: <strong>Tilt Series Date:</strong> 2010-09-25</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 66.0°), step: 0.8°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-25-5/rawdata/</p>10sep25c_BS_PGTA_15min_009.st,  Tilt Series (Pixel Size 0.774 nm), 2.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10sep25c_BS_PGTA_15min_009.rec,  Reconstruction (Pixel Size 1.548 nm), 191.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y553h-b1b61
title: Salmonella typhimurium

description: Session notes: Salmonella minicells for fliL flagella, and T3SS. Auto-reconstructed to pixel size 5.18, then binned 2x further, low-pass filtered 0.33, 0.025; gold beads detected 24pix, erased 34pix. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-03-20</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-03-20-2_slicer5318.jpg: Flagella
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-03-20-2/rawdata/</p>12mar20b_fliL_0003.st,  Tilt Series (Pixel Size 20.136 nm), 743.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12mar20b_fliL_0003.rec,  Reconstruction (Pixel Size 1.036 nm), 38.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/406gd-17m77
title: Salmonella typhimurium

description: Session notes: Salmonella fliL minicells with T3SS Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-19</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-19-20_slicer4498.jpg: Flagella mba2012-09-19-20_slicer4509.jpg: Vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-20/rawdata/</p>12sep19a_fliL_0030.st,  Tilt Series (Pixel Size 0.512 nm), 636.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12sep19a_fliL_0030.rec,  Reconstruction (Pixel Size 1.12 nm), 353.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k2w2g-xmk86
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-24_slicer5663.jpg: Chemoreceptors
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-24/rawdata/</p>12sep28a_cjj0413_0040.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0040.rec,  Reconstruction (Pixel Size 1.12 nm), 55.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/smye8-dbp52
title: Vibrio fischeri

description: Session notes: Vibrio fischeri WT flagella, binned 4x total then filtered 0.28 (= 4.6nm resolution cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-17</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Vibrio fischeri</p>
<strong>Strain:</strong> ES114</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-12-17-18_slicer6384.jpg: Flagella
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-17-18/rawdata/</p>11dec17c_WTVFischeri_0003.st,  Tilt Series (Pixel Size 0.632 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11dec17c_WTVFischeri_0003.rec,  Reconstruction (Pixel Size 0.644 nm), 210.3 MB  
        
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DOI: 10.7910/dvn/wk5gzx
title: Current Population Survey 1986 (March/April match file, alimony and child support)

description: The Current Population Survey (CPS) is a household survey sample consisting of the civilian non-institutional population of the United States living in housing units and male members of the Armed Forces living in civilian housing units on a military base or in households not on a military base. These data highlight alimony and child support arrangements made a the time of separation or divorce, amount of payments actually received, and value and type of any property settlement. This file also provides the usual monthly labor force data plus data on work experience, income, and migration. Comprehensive information is given on the employment status, occupation, and industry of persons 14 years old and over.
DOI: 10.22002/yfrkm-9kh62
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025, SIRT reconstruction, removed gold. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-24</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-04-24-11_slicer6679.jpg: filament mba2012-04-24-11_slicer6680.jpg: peptidoglycan
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-11/rawdata/</p>12apr24a_flgP_0023.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
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        12apr24a_flgP_0023.rec,  Reconstruction (Pixel Size 1.56 nm), 39.4 MB  
        
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DOI: 10.15468/dl.j43e2c
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Macroptilium erythroloma"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044072-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.