cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1139051.10fu
title: SH1139051.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1139053.10fu
title: SH1139053.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1139054.10fu
title: SH1139054.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.mb8ssr
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphelinus flaviventris Kurdjumov, 1913",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022147-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c4yn9
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aprostocetus pausiris (Walker, 1839)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 268 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022148-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17043/zeppelin-siegel-2025-dms-1
title: Arctic observations of dimethyl sulfide (DMS) oxidation products during the Ny-Ålesund aerosol cloud experiment 2019⁠ – ⁠2020
DOI: 10.15468/dl.b729c5
title: Occurrence Download

description: A dataset containing 11128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Enallagma geminatum Kellicott, 1895"
 ]
}

 The dataset includes 11128 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022149-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhqw7d
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cyrtochilum leucopterum (Rchb.f.) Dalström"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022150-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14989874
title: Dataset from: Petitjean et al. (Submitted) Experimental metal contamination reduces gut microbiota diversity and alters its composition and function in wild-caught fish.

description: Wild organisms face multiple environmental stressors that can interact and affect their health in unexpected ways. In this context, a growing body of evidence suggests that some responses to environmental stressors might be mediated by changes in gut microbiome with cascading effects on host health. However, the combined effects of multiple stressors on host microbiota and health are still overlooked. Here, we investigated the single and interactive effects of a realistic metal pollution and an immune challenge mimicking a parasite attack on the gut microbiome of wild fish while taking into account the intraspecific variability among populations. We tested the effects of experimental exposure to trace metal elements (i.e., mixture of Cd, Cu, Zn) and of an injection of antigens on the taxonomic and functional diversity and composition of gut microbiota among several wild freshwater fish (Gobio occitaniae) populations sampled along gradients of contamination in streams. We found that gut microbial community was strongly altered by the experimental metal contamination, with no interaction with the immune secondary stressor. Indeed, metal contamination reduced both taxonomic and functional gut microbial diversity, affecting the microbial community's taxonomic and functional composition, with predicted consequences for their functional role in fish. We found that metal contamination reduced microbial function related to molecule biosyntheses (e.g., cell structure and amino acid precursors) while increasing functions associated with energy production (e.g., anaerobic respiration). In addition, populations sampled along a gradient of pollution in the wild did not differ in their response, suggesting a consistent impact of contaminants irrespective of the host’s past exposure to pollution. Although the long-term implications for fitness remain to be determined, our results shed light on the alterations induced by realistic levels of metal contamination on fish gut microbiome with potential consequences on fish's ability to cope with environmental stressors.
DOI: 10.5281/zenodo.15068956
title: EPA CAMPD (Clean Air Markets Program Data) XML records

description: EPA CAMPD (Clean Air Markets Program Data) XML records
DOI: 10.5281/zenodo.15068957
title: EPA CAMPD (Clean Air Markets Program Data) XML records

description: EPA CAMPD (Clean Air Markets Program Data) XML records
DOI: 10.5281/zenodo.15068961
title: EPA CAMPD (Clean Air Markets Program Data) MP records

description: EPA CAMPD (Clean Air Markets Program Data) MP records
DOI: 10.5281/zenodo.15068962
title: EPA CAMPD (Clean Air Markets Program Data) MP records

description: EPA CAMPD (Clean Air Markets Program Data) MP records
DOI: 10.15468/dl.zuykz5
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphidius smithi Sharma & Subba Rao, 1959",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022151-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15068964
title: EPA CAMPD (Clean Air Markets Program Data) QA records

description: EPA CAMPD (Clean Air Markets Program Data) QA records
DOI: 10.5281/zenodo.15068965
title: EPA CAMPD (Clean Air Markets Program Data) QA records

description: EPA CAMPD (Clean Air Markets Program Data) QA records
DOI: 10.21227/1ent-1946
title: Stock Market Index (SSEC, SZI, STI, and SPX)

description: These are the daily closing prices of four stock indices including Shanghai Securities Composite Index (SSEC) and the Shenzhen Securities Component Index (SZI) from China, the Straits Times Index (STI) from Singapore, and the Standard & Poor 500 Index (SPX) from the United States. The SSEC data is from December 19,1990 to May 25, 2023. The data of SZI is from April 3, 1991 to May 25, 2023. The STI data is from December 3, 1990, to May 25, 2023, and the data of SPX is from December 3, 1990 to May 25, 2023. The total number of observations for SSEC, SZI, STI, and SPX is 7922, 7879, 8195, and 8184 respectively. This dataset can be used for evaluation of the forecasting models.
DOI: 10.5281/zenodo.15068959
title: Examples of Feature Vectors Related to Architecture, Integration, and Method.
DOI: 10.5281/zenodo.15068960
title: Examples of Feature Vectors Related to Architecture, Integration, and Method.
DOI: 10.34740/kaggle/dsv/11128791
title: Sales Dataset
DOI: 10.12770/d5da916a-163c-47b9-8a8e-73dcaeec7986
title: Classification Géomorphologique de la pente continentale du Golfe de Gascogne (1/500 000)

description: Analyse géomorphologique de la pente continentale du Golfe de Gascogne réalisée sur la base d'un modèle numérique de terrain (MNT) bathymétrique au pas 100m. Ce MNT est une synthèse des données acquises lors des campagnes à la mer ZEE 1, ZEE 2, Sedimanche, Sedifan 1, Sedifan 2, EssNaut 2009, EssReson08, ValidOp, BOBGeo 1, BOBGeo 2, EssInf.
DOI: 10.17882/77667
title: Sedimentological and geochemical records of the North Atlantic Glacial Eastern Boundary Current, 50-15 ka BP

description: The upper branch of the Atlantic Meridional Overturning Circulation (AMOC) plays a critical role in ocean circulation and climate change, yet its variability during the last glacial period is poorly documented. Here, we investigate the northward-flowing Glacial Eastern Boundary Current (GEBC) in the North Atlantic, known today as the European Slope Current, and representing the easternmost portion of the upper branch of the AMOC. Based on flow speed (sortable silt, XRF) and radiogenic/stable isotopic records, we show that Dansgaard-Oeschger (D/O) interstadials (stadials) correspond to a faster (weaker) GEBC during the ~50-15 ka period. This, by analogy to present-day conditions, suggests enhanced (reduced) strength of the subpolar gyre and, by extension, of northern-sourced water production and AMOC during D-O interstadials (stadials). Concomitant fluctuations of both the European Ice Sheet and the GEBC between ~30 and 17 ka suggest an active role of the upper branch of AMOC in the poleward transport of heat and freshwater to the northern North Atlantic, with direct impacts on deep water formation and AMOC strength. Our GEBC reconstruction is the first physical (non-chemical) record documenting dynamic upper AMOC variability at high resolution in the eastern basin of the North Atlantic. Together with the deep North Atlantic records of northern-sourced water export, they confirm the central role of the AMOC in the generation of abrupt climate changes.
DOI: 10.17882/88029
title: Intermediate ocean circulation and cryosphere dynamics in the northeast Atlantic during Heinrich Stadials: benthic foraminiferal assemblage response

description: The interaction between ocean circulation and ice-sheet dynamics plays a key role in the Quaternary climate. Compared to the surface and deep compartments of the Atlantic Meridional Overturning Circulation (AMOC), the study of intermediate depths during key time periods, such as Heinrich Stadials (HSs), remains poorly documented, especially in the Northeast Atlantic. Here we use benthic foraminiferal assemblage data to trace paleoenvironmental changes from ~32 to 14 ka cal BP at ~1000 m depth in the Bay of Biscay. Our results highlight the high sensitivity of benthic foraminifera, with species-specific responses, to continental (European Ice Sheet dynamics) and marine (AMOC) forcing factors during the last three HSs. In general, HSs were characterized by the concomitant presence of meso-oligotrophic and anoxia indicator species and the low abundance of high-energy indicator species. This confirms an overall sluggish intermediate circulation during the three HSs in the Northeast Atlantic. HS1 is distinctive by the abundance of high-organic flux indicator species during its early phase. This is consistent with the fact that HS1 was, by far, the most important period of ice-sheet retreat and meltwater release to the ocean over the studied time interval. Finally, foraminifera depict the mid-HS2 re-ventilation event due to regional glacier instabilities.
DOI: 10.21227/475t-ex55
title: Stock Market Index (SSEC, SZI, STI, and SPX)

description: These are the daily closing prices of four stock indices including Shanghai Securities Composite Index (SSEC) and the Shenzhen Securities Component Index (SZI) from China, the Straits Times Index (STI) from Singapore, and the Standard & Poor 500 Index (SPX) from the United States. The SSEC data is from December 19,1990 to May 25, 2023. The data of SZI is from April 3, 1991 to May 25, 2023. The STI data is from December 3, 1990, to May 25, 2023, and the data of SPX is from December 3, 1990 to May 25, 2023. The total number of observations for SSEC, SZI, STI, and SPX is 7922, 7879, 8195, and 8184 respectively. This dataset can be used for evaluation of the forecasting models.
DOI: 10.15468/dl.q848ds
title: Occurrence Download

description: A dataset containing 107792 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ichthyology Collection - Royal Ontario Museum"
 ]
}

 The dataset includes 107792 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022152-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28644269.v2
title: Improving Dermatomyositis Rehabilitation Through Individualized Plyometrics and Multidimensional Training

description: This randomized controlled trial evaluated a 12-week multidimensional assessment-guided rehabilitation program for 60 dermatomyositis patients in recovery. The intervention group (n=30) received personalized muscle strength training and nursing care based on systematic evaluations of muscle strength (MMT), daily living activities, and quality of life, while the control group (n=30) received standard care. Post-intervention, the intervention group demonstrated clinically meaningful improvements: a 1.7-point increase in MMT scores (p&lt;0.001), alongside significantly enhanced daily living capacity and quality of life compared to controls (all p&lt;0.05). The findings highlight that structured multidimensional assessment enables targeted rehabilitation planning, addressing critical limitations of conventional one-size-fits-all approaches. By objectively quantifying functional deficits and progress, this strategy optimizes neuromuscular recovery and psychosocial adaptation during rehabilitation. The results support integrating systematic evaluation frameworks into clinical practice to personalize care pathways, potentially reducing long-term disability risks and improving cost-effectiveness in autoimmune myopathy management. This evidence-based approach establishes a replicable model for enhancing functional outcomes in chronic inflammatory myopathies.
DOI: 10.34740/kaggle/dsv/11128913
title: Elon Musk Tweets 2010 to 2025 (March)
DOI: 10.5281/zenodo.15068921
title: Biology and genetics, a new perspective in theory   "Infinitely Intelligent Biological Simulation: The Infinite Cycle of Creator and Creature"

description:  Abstract 

  With the progress of cognitive science, molecular biology and quantum mechanics, fundamental questions have been raised about the nature of consciousness and the possibility of simulating it in biological structures (Hameroff & Penrose, 2014).  In this regard, the theory of "infinitely intelligent biological simulation: the infinite cycle of creator and creature" proposes that consciousness, as an information structure, is in a recursive cycle between creator and creature and is processed and enhanced through biological and quantum mechanisms.

 

 This article specifically examines "the role of genes as key codes for understanding the past and the path to the future" within the framework of this theory.  Genes are not only carriers of biological information of living organisms, but can also be considered as mediators in the transmission and processing of consciousness in higher dimensions of existence.  This perspective transcends genetics from a purely biological framework and analyzes it in a broader context of biological phenomena, consciousness developments, and cosmic structures.  This research, using data from molecular biology, epigenetics and synthetic biology, investigates this relationship and provides a new framework for understanding the genome as part of an intelligent cosmic pattern.

 

 Note: In the first article, the principles of genetics, biology and self-awareness were briefly reviewed and a proposed theory was presented under the title "infinitely intelligent biological simulation: the infinite cycle of creator and creature" (Rahim, 2025). DOI.https://doi.org/10.5281/zenodo.14941555

 

 This theory, based on the continuity of the creator and the created in an endless cycle, has investigated cosmic structures, physical principles, and fundamental concepts of consciousness.  In this framework, the law of conservation of energy is considered as the main basis and it is stated that not only matter and energy, but also consciousness is stable and continuously moves on the path of promotion to higher levels of perception and cognition.

 (This article was originally written in Farsi and translated into English using translation platforms.)
DOI: 10.5281/zenodo.15068922
title: Biology and genetics, a new perspective in theory   "Infinitely Intelligent Biological Simulation: The Infinite Cycle of Creator and Creature"

description:  Abstract 

  With the progress of cognitive science, molecular biology and quantum mechanics, fundamental questions have been raised about the nature of consciousness and the possibility of simulating it in biological structures (Hameroff & Penrose, 2014).  In this regard, the theory of "infinitely intelligent biological simulation: the infinite cycle of creator and creature" proposes that consciousness, as an information structure, is in a recursive cycle between creator and creature and is processed and enhanced through biological and quantum mechanisms.

 

 This article specifically examines "the role of genes as key codes for understanding the past and the path to the future" within the framework of this theory.  Genes are not only carriers of biological information of living organisms, but can also be considered as mediators in the transmission and processing of consciousness in higher dimensions of existence.  This perspective transcends genetics from a purely biological framework and analyzes it in a broader context of biological phenomena, consciousness developments, and cosmic structures.  This research, using data from molecular biology, epigenetics and synthetic biology, investigates this relationship and provides a new framework for understanding the genome as part of an intelligent cosmic pattern.

 

 Note: In the first article, the principles of genetics, biology and self-awareness were briefly reviewed and a proposed theory was presented under the title "infinitely intelligent biological simulation: the infinite cycle of creator and creature" (Rahim, 2025). DOI.https://doi.org/10.5281/zenodo.14941555

 

 This theory, based on the continuity of the creator and the created in an endless cycle, has investigated cosmic structures, physical principles, and fundamental concepts of consciousness.  In this framework, the law of conservation of energy is considered as the main basis and it is stated that not only matter and energy, but also consciousness is stable and continuously moves on the path of promotion to higher levels of perception and cognition.

 (This article was originally written in Farsi and translated into English using translation platforms.)
DOI: 10.6084/m9.figshare.28644290
title: Bacillus inaquosorum LBA001 Pan_core_genome_stats.xls

description: This Data describes the distribution of the core genes reported in Bacillus inaquosorum LBA001 <br>
DOI: 10.5281/zenodo.15068904
title: Dataset for: Monoclonal antibodies targeting the FimH adhesin protect against uropathogenic E. coli UTI

description: Raw data for Figs. 1D, 1E, 3A, 3B, 4A, 4B, 5B, 5C, 5D, 5G, and 5H and fig. S8-S10 the manuscript "Monoclonal antibodies targeting the FimH adhesin protect against uropathogenic E. coli UTI" by Lopatto et al.
DOI: 10.5281/zenodo.15068905
title: Dataset for: Monoclonal antibodies targeting the FimH adhesin protect against uropathogenic E. coli UTI

description: Raw data for Figs. 1D, 1E, 3A, 3B, 4A, 4B, 5B, 5C, 5D, 5G, and 5H and fig. S8-S10 the manuscript "Monoclonal antibodies targeting the FimH adhesin protect against uropathogenic E. coli UTI" by Lopatto et al.
DOI: 10.15468/dl.q8q3zq
title: Occurrence Download

description: A dataset containing 1443 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphrodes bicincta (Schrank, 1776)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1443 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022155-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9aynvw
title: Occurrence Download

description: A dataset containing 10837 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Insectos de la Universidad del Quindío"
 ]
}

 The dataset includes 10837 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022157-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.