cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22151567.v1
title: Supplementary Material for: Development of a new self-assessment tool for laryngopharyngeal reflux screening in singers (SVHI-12-LPR)

description: Introduction: The present study aims to develop a new tool for the evaluation of singers with self-reported symptoms suggestive of LPR (the SVHI-12-LPR), by correlating RSI with SVHI in a population sample of 163 subjects (both professional and amateur singers), evaluated also by videolaryngostroboscopy. This study is a cross-sectional double observational study. Methods: RSI and SVHI were administered to 159 singers (amateurs, singing students and professional singers). All subjects underwent videolaryngostroboscopy to objectively identify four subgroups: normal subjects (41.5%), subjects with organic lesions occupying the glottic space (17.6%), subjects with functional dysphonia (18.2%), subjects presenting solely signs suggestive of LPR (22.6%). Using the validated RSI threshold, 33.9% of participants presented an RSI total score &gt;13, suggestive of LPR. Results: Subjects with a suspected diagnosis of LPR at videolaryngostroboscopy presented a mean RSI significantly higher than other subgroups (p&lt;0.001). Moreover, the SVHI-36 score did not statistically differ between pathological subgroups. A significant positive relationship was observed between RSI and SVHI total score (Spearman’s rank correlation coefficient (rho) = 0.474, p&lt; 0.001). 12 SVHI items (items 1, 2, 4, 5, 6, 7, 12, 20, 24, 25, 26, 30) showed a significant association with RSI pathology classification. Statistical analysis demonstrated for the 12 selected items (SVHI-12-LPR) acceptable specificity (0.691) and sensibility (0.833) for the suspected diagnosis of LPR with a cutoff of 15. Conclusions: From the SVHI-36, 12 items were extracted that correlated with the specific impact that LPR has on the singer’s voice (SVHI-12-LPR), as evaluated by RSI and videolaryngostroboscopy. Such questionnaire represents a new tool that could be applied to singers with symptoms suggestive of LPR, to select which patients would benefit from a further phoniatric and videolaryngostroboscopic evaluation.
DOI: 10.6084/m9.figshare.21316374
title: Supporting data to 'Macroevolutionary patterns in intragenomic rDNA variability among planktonic foraminifera'

description: <strong>Alignment files</strong> <br> Alignments used to investigate the presence of intragenomic polymorphism in foraminiferal specimens. The .fasta files are organised in folders by helix and in single files by specimen_id. <br> <strong>Phylogenetic trees</strong> <br> Non-Spinose, Spinose and Microperforate .tree files used for the phylogenetic analyses. <br> <strong>cloning_effort.csv</strong> <br> Table reporting the cloning effort for each species analysed in the study. The number of specimens cloned is reported in the column 'cloned' and the ones for which the sequence was obtained by direct sequencing in the column 'd_sequencing'. <br> <strong>ig_incidence_by_region.csv</strong> <br> Summary<strong> </strong>of the results of the analyses used to calculate intragenomic variability incidence for each region investigated. In the table we report the number of specimens with intragenomic variability, the total number of specimens analysed, the clade and the calculated incidence. <br> <strong>overall_ig_incidence.csv</strong> <br> Table reporting overall incidence of intragenomic variability including data from all the variable regions analysed for each species. <br> <strong>pol_sites_data.csv</strong> <br> Table reporting the number and the position(s) of the polymorphic sites detected in the specimens displaying intragenomic variability.<strong> </strong> <br> <strong>slr_data.csv</strong> <br> Table summarising the amount of polymorphic sites located on stem or loop regions of the helix. The derived stem loop ratio is reported in the column sl_ratio <br> <strong>annotated_structure.csv</strong> <br> For each specimen, the alignment consensus sequences used for the molecular simulations are reported in dot-bracked format. <br>
DOI: 10.5281/zenodo.7794455
title: Invariant echo localization using bat pinnae

description: This dataset works with the scripts provided in the GitHub repository in the link:<br> https://github.com/zaco87/Paper-Invariance-Localization matlab_variables_data.mat - should be loaded to Matlab. It has the entire data that is needed for running the Matlab programs provided with the paper's repository on GitHub
DOI: 10.5281/zenodo.7794454
title: Invariant echo localization using bat pinnae

description: This dataset works with the scripts provided in the GitHub repository in the link:<br> https://github.com/zaco87/Paper-Invariance-Localization matlab_variables_data.mat - should be loaded to Matlab. It has the entire data that is needed for running the Matlab programs provided with the paper's repository on GitHub
DOI: 10.6084/m9.figshare.22100714
title: Supplementary Material for: SILIBININ, AN HSP90 INHIBITOR, ON HUMAN ACTH-SECRETING ADENOMAS

description: Introduction. The glucocorticoid receptor is pivotal to control corticotrophin (ACTH) secretion and its function is closely linked to the heat shock protein 90 (HSP90) chaperone complex. Impaired sensitivity to glucocorticoid feedback is a hallmark of human corticotroph adenomas, i.e., Cushing’s disease, a disorder with few medical treatment options. Silibinin, a HSP90 inhibitor, has been studied in tumoral corticotroph cells and its use proposed in Cushing’s disease. Aim of the present study was to further investigate the effect of silibinin on human corticotroph adenomas in vitro. Methods. Seven human ACTH-secreting pituitary adenomas were established in culture and treated with 10 – 50 µM silibinin with/without dexamethasone for up to 72 hours. ACTH medium levels were measured and POMC and glucocorticoid receptor, i.e., NR3C1, gene expression assessed. Results. Silibinin reduced spontaneous ACTH secretion and restored sensitivity to steroid negative feedback to a different extent in individual adenomas. POMC expression was decreased both in control and dexamethasone-treated wells in specimens sensitive to silibinin. Interestingly, silibinin reduced constitutive NR3C1 expression and reversed the dexamethasone-induced inhibition. Conclusions. Our findings indicate that silibinin can inhibit ACTH synthesis and secretion in individual human corticotroph adenomas and directly affects NR3C1 gene expression. These results reveal promising effects of this HSP90 inhibitor on human corticotroph adenomas and support an innovative target treatment for patients with Cushing’s disease.
DOI: 10.21410/7e4/ylg6yr
title: A Brief History of Human Time - Codes Datasets

description: This compressed folder includes the code used for scraping and building the dataset, the intermediate datasets and the (not cross-verified) exhaustive dataset. This dataset is linked to the following paper that should be cited directly instead of the data itself: Morgane Laouenan, Palaash Bhargava, Jean-Benoît Eyméoud, Olivier Gergaud, Guillaume Plique, Etienne Wasmer (2022) A cross-verified database of notable people, 3500BC-2018AD, Scientific Data, June 2022. Bibtex: @article{bhht3, author = {Laouenan, Morgane and Bhargava, Palaash and Eyméoud, Jean-Benoît and Gergaud, Olivier and Plique, Guillaume and Wasmer, Etienne}, title = {A cross-verified database of notable people, 3500BC-2018AD}, journal = {Scientific Data}, publisher = {Nature Publishing Group}, year = {2022}, month = {Jun}, day = {09}, volume = {9}, number = {1}, pages = {290}, issn = {2052-4463}, doi = {10.1038/s41597-022-01369-4}, url = {https://doi.org/10.1038/s41597-022-01369-4} } The intermediate files as well as the exhaustive database are not cross-verified and should not be used directly or under the full responsibility of users. All datasets included in this folder are subject to CC-BY-SA licensing.
DOI: 10.21410/7e4/rdag3o
title: A Brief History of Human Time - Cross-verified Dataset

description: This cross-verified dataset contains 2.2 million individuals, it can be used for research purposes. This dataset is linked to the following paper that should be cited directly instead of the data itself: Morgane Laouenan, Palaash Bhargava, Jean-Benoît Eyméoud, Olivier Gergaud, Guillaume Plique, Etienne Wasmer (2022) A cross-verified database of notable people, 3500BC-2018AD, Scientific Data, June 2022. Bibtex: @article{bhht3, author = {Laouenan, Morgane and Bhargava, Palaash and Eyméoud, Jean-Benoît and Gergaud, Olivier and Plique, Guillaume and Wasmer, Etienne}, title = {A cross-verified database of notable people, 3500BC-2018AD}, journal = {Scientific Data}, publisher = {Nature Publishing Group}, year = {2022}, month = {Jun}, day = {09}, volume = {9}, number = {1}, pages = {290}, issn = {2052-4463}, doi = {10.1038/s41597-022-01369-4}, url = {https://doi.org/10.1038/s41597-022-01369-4} } This dataset is subject to CC-BY-SA licensing.
DOI: 10.5281/zenodo.7519869
title: Alteromonas_macleodii_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Alteromonas macleodii which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7519868
title: Alteromonas_macleodii_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Alteromonas macleodii which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520006
title: Sulfitobacter_geojensis_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Sulfitobacter geojensis which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520005
title: Sulfitobacter_geojensis_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Sulfitobacter geojensis which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520018
title: Phaeobacter_inhibens_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Phaeobacter inhibens which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520017
title: Phaeobacter_inhibens_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Phaeobacter inhibens which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520027
title: Erythrobacter_flavus_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Erythrobacter flavus which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520026
title: Erythrobacter_flavus_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Erythrobacter flavus which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.6084/m9.figshare.22495666
title: R2-DDI Twosides Dataset

description: Dataset for paper "R2-DDI: Relation-aware Feature Refinement for Drug-drug Interaction Prediction".
DOI: 10.5281/zenodo.7520021
title: Sulfitobacter_pontiacus_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Sulfitobacter pontiacus which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520020
title: Marinobacter_sp_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Marinobacter sp which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7520019
title: Marinobacter_sp_isolate_huxleyi1516

description: Genome assembly of the bacterial strain Marinobacter sp which was isolated from the algal strain <em>Emiliania huxleyi</em> CCMP1516. Genome sequencing was performed using PacBio platform. The assembly of the genome was performed in the analysis software SMRTlink.
DOI: 10.5281/zenodo.7793986
title: Data on the Nordic-Baltic pine wood nematode surveys

description: These files contain the data needed for assessing the confidence in pest freedom gained in the Estonian, Finnish, Lithuanian, Norwegian and Swedish pine wood nematode (PWN) surveys using the NoBaSURV-PWN application (https://nobasurv-pwn.rahtiapp.fi/). The data covers PWN surveys from the following years: Estonia, 2002–2021 Finland, 2000–2021 Lithuania, 2015–2021 Norway, 2000–2019 Sweden, 2013–2021 In all the files, the first row has the names of the regions included and the first column has the years considered, and the data in the table is arranged accordingly. Details about the surveys and the data files will be provided in the final report of the project the project “Assessing the confidence in pest freedom gained in the past pine wood nematode surveys” funded by the European Food Safety Authority (GP/EFSA/ENCO/2020/03 - Partnering grants). The aim of the project is to build capacity for assessing the probability of pest freedom gained in past PWN surveys. The project is a co-operation between the Finnish Food Authority, the Estonian Agriculture and Food Board, the Lithuanian State Plant Service under the Ministry of Agriculture, the Norwegian Scientific Committee for Food and Environment and the Swedish University of Agricultural Sciences.
description: FI; en; csv; juha.tuomola@foodauthority.fi
DOI: 10.5281/zenodo.7793987
title: Data on the Nordic-Baltic pine wood nematode surveys

description: These files contain the data needed for assessing the confidence in pest freedom gained in the Estonian, Finnish, Lithuanian, Norwegian and Swedish pine wood nematode (PWN) surveys using the NoBaSURV-PWN application (https://nobasurv-pwn.rahtiapp.fi/). The data covers PWN surveys from the following years: Estonia, 2002–2021 Finland, 2000–2021 Lithuania, 2015–2021 Norway, 2000–2019 Sweden, 2013–2021 In all the files, the first row has the names of the regions included and the first column has the years considered, and the data in the table is arranged accordingly. Details about the surveys and the data files will be provided in the final report of the project the project “Assessing the confidence in pest freedom gained in the past pine wood nematode surveys” funded by the European Food Safety Authority (GP/EFSA/ENCO/2020/03 - Partnering grants). The aim of the project is to build capacity for assessing the probability of pest freedom gained in past PWN surveys. The project is a co-operation between the Finnish Food Authority, the Estonian Agriculture and Food Board, the Lithuanian State Plant Service under the Ministry of Agriculture, the Norwegian Scientific Committee for Food and Environment and the Swedish University of Agricultural Sciences.
description: FI; en; csv; juha.tuomola@foodauthority.fi
DOI: 10.5281/zenodo.7756303
title: Spin Diffusion under Fast Magic-Angle Spinning in Solid-State NMR

description: Supporting data, scripts, and source code to go with the paper manuscript.
DOI: 10.5281/zenodo.7521397
title: Spin Diffusion under Fast Magic-Angle Spinning in Solid-State NMR

description: Supporting data, scripts, and source code to go with the paper manuscript.
DOI: 10.6084/m9.figshare.22219180.v1
title: Supplementary Material for: Three Dimensional Assessment of Radiographic Changes after Indirect Pulp Capping using Silver Diamine Fluoride with or without Potassium Iodide in Young Permanent Teeth (12-month RCT)

description: The aim was to have a three-dimensional evaluation of radiographic changes after indirect pulp capping (IPC) with silver diamine fluoride (SDF) with or without potassium iodide (KI) and resin modified glass ionomer cement (RMGIC) in deep carious young permanent molars using cone beam computed tomography (CBCT). 108 first permanent molars with deep occlusal cavitated caries lesions, in forty-nine 6–9-year-old children, were randomly allocated to one of 3 groups (n=36) and treated with SDF+KI, SDF and RMGIC as IPC materials. CBCT scans were taken at 0 and at 12-months to assess tertiary dentin formation (volume and grey level intensity), increase in root length, and pathological changes as secondary caries, periapical radiolucency, internal resorption and obliteration of the pulp. The three-dimensional image analysis procedures were performed using ITK-SNAP and 3D Slicer CMF. Comparisons were made using analysis of variance with a fixed effect for treatment and random effects for patient, and patient-by-treatment to account for within-patient correlations. A two-sided 5% significance level was used. There were no significant differences among the three groups regarding tertiary dentin volume (p=0.712) and grey level intensity (p=0.660), increase in root length (p=0.365), prevention of secondary caries (p=0.63) and periapical radiolucency (p=0.80) in the analysed 69 CBCT scans. The study did not find differences among the groups regarding quality and quantity of tertiary dentin formed, increase in root length, absence of secondary caries and other signs of failure as shown by CBCT. Clinical Significance: The results show no significant differences in radiographic outcomes (quality and quantity of tertiary dentin formed, increase in root length, absence of secondary caries and other signs of failure) when using SDF+KI, SDF and RMGIC in IPC. The results of this study can help guide treatment decision making regarding use of SDF and SDF+KI as IPC materials in deep cavitated lesions.
DOI: 10.6084/m9.figshare.22219180
title: Supplementary Material for: Three Dimensional Assessment of Radiographic Changes after Indirect Pulp Capping using Silver Diamine Fluoride with or without Potassium Iodide in Young Permanent Teeth (12-month RCT)

description: The aim was to have a three-dimensional evaluation of radiographic changes after indirect pulp capping (IPC) with silver diamine fluoride (SDF) with or without potassium iodide (KI) and resin modified glass ionomer cement (RMGIC) in deep carious young permanent molars using cone beam computed tomography (CBCT). 108 first permanent molars with deep occlusal cavitated caries lesions, in forty-nine 6–9-year-old children, were randomly allocated to one of 3 groups (n=36) and treated with SDF+KI, SDF and RMGIC as IPC materials. CBCT scans were taken at 0 and at 12-months to assess tertiary dentin formation (volume and grey level intensity), increase in root length, and pathological changes as secondary caries, periapical radiolucency, internal resorption and obliteration of the pulp. The three-dimensional image analysis procedures were performed using ITK-SNAP and 3D Slicer CMF. Comparisons were made using analysis of variance with a fixed effect for treatment and random effects for patient, and patient-by-treatment to account for within-patient correlations. A two-sided 5% significance level was used. There were no significant differences among the three groups regarding tertiary dentin volume (p=0.712) and grey level intensity (p=0.660), increase in root length (p=0.365), prevention of secondary caries (p=0.63) and periapical radiolucency (p=0.80) in the analysed 69 CBCT scans. The study did not find differences among the groups regarding quality and quantity of tertiary dentin formed, increase in root length, absence of secondary caries and other signs of failure as shown by CBCT. Clinical Significance: The results show no significant differences in radiographic outcomes (quality and quantity of tertiary dentin formed, increase in root length, absence of secondary caries and other signs of failure) when using SDF+KI, SDF and RMGIC in IPC. The results of this study can help guide treatment decision making regarding use of SDF and SDF+KI as IPC materials in deep cavitated lesions.
DOI: 10.34740/kaggle/dsv/5303079
title: Egypt Gold Prices | Daily Updated
DOI: 10.6084/m9.figshare.22495561
title: TWAS and PALAS summary statistics

description: Summary statistics for transcriptome-wide association studies (TWAS) and pathway level association studies (PALAS) in coronary artery disease (CAD) and schizophrenia (SCZ). Complete results referring to xx publication. <br> CAD: UKBB_white_british/: results from UK Biobank considering only white British individuals. CARDIOGRAM/: results from a meta-analysis of 9 CARDIOGRAM cohorts. UKBB_indian/: results from UK Biobank considering only Indian individuals. All results are based on the same PriLer models trained on individuals of European ancestry in GTEx v6p reference panel. <br> SCZ: PGC_wave2/: results from 36 European cohorts from Psychiatric Genomic Consortium (PGC) wave2 Results are based on PriLer models trained on individuals of European ancestry in CMC and GTEx v6p reference panels.
DOI: 10.34740/kaggle/dsv/5303197
title: 2021 World Population (updated daily)
DOI: 10.48432/3z8aoq
title: Dados da caracterização do comportamento da nanoformulação lignina-picloram em solo

description: Dados da caracterização do comportamento da nanoformulação lignina-picloram quanto à sorção/dessorção em solo (segundo "OECD Guidelines 106") e quanto à mobilidade (ou lixiviação) em colunas de solo (segundo "OECD Guidelines 312"). A obtenção dos dados se deu por meio da aplicação da cromatografia líquida de alta eficiência (HPLC, high performance liquid chromatography) como técnica de análise instrumental. Tais dados geraram informações sobre o comportamento da formulação lignina-picloram no solo após a sua aplicação.
DOI: 10.5281/zenodo.7780930
title: Clonal heterogeneity of endocrine therapy resistance in breast cancer

description: We barcoded endocrine therapy sensitive cell lines (MCF7 and T47D) and rendered them resistant to commonly applied first line endocrine therapeutics (Tamoxifen and estrogen deprivation). Next, we isolated single cell clones of endocrine therapy resistant populations and subjected clonal cell lines to RNA-Seq and Phosphoproteomics profiling.
description: Supplementary data and material necessary for reproducing the analysis of the relative publication. The raw data of this study have been uploaded in the EGA European Genome-Phenome Archive (EGAS00001007123). Short description of the included data files: Integration site analysis: Analysis of viral integration sites as described in the paper performed by Genewerk GmbH for selected barcoded cell line pools. MCF7_TAMR/LTED_MiSeq_all_barcodes_gr10: Individual MCF7 TAMR and LTED clones were characterized by many barcodes. Therefore, the barcodes of individual clones were deeply sequenced on a MiSeq as described in the paper. All_barcodes_seqq_table: contains information about all barcodes and their reads in all barcoded cell lines as described in the paper.