cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25358932.v1
title: Beyond the Frame: Evaluating Panoramic vs. Perspective Images for Assessing Place Perception

description: About this datasetThis dataset was collected Urban Panoramic Perception (UP2), an online platform to evaluate the use of panoramic imagery in urban perception studies.AbstractStreet View Imagery is used extensively to predict and understand the perception of the urban space by pedestrians (e.g., feeling of safety). While traditional approaches use perspective images (implying a limited field of view) to collect the opinion of participants, this paper evaluates the use of 360° imagery in crowdsourcing experiments. 360° imagery has the benefit of adding visual context compared to perspective images (``out-of-frame” information) and provides a better immersion for the participant, while being accessible on regular computer monitors. We developed a website to collect the opinion of 364 participants on both types of images. Based on 48 comparisons, our experiment shows that in 19\% of the cases ,the evaluation of the safety of a place differs if the context is shown to the participant beforehand. Additionally, we demonstrate that the out-of-frame information plays a role in how a participant rates an image. Finally, we provide comparisons with a Machine Learning model trained on the popular Place Pulse 2.0 dataset and show that using 360° imagery has a smoothing effect over the ratings of a place, compared to perspective images. These results have strong implications for the creation of urban perception datasets via crowdsourcing techniques.FundingThis work was supported by the École Centrale de Nantes and the Région Pays de la Loire (France) through the AiBy4 program.
DOI: 10.6084/m9.figshare.29097263.v1
title: data for Unraveling the Impact of Heterogeneity and Morphology on Light Absorption Enhancement of Black Carbon-Containing Particles.xlsx

description: Unraveling the Impact of Heterogeneity and Morphology on Light Absorption Enhancement of Black Carbon-Containing Particles
DOI: 10.6084/m9.figshare.5554519.v1
title: Experiment CLA-SubjectC-151126-3States

description: Experiment in which subject performed 3 imageries of left and right hand motion and a passive state.
DOI: 10.17632/s24z62sbsf
title: Software_Guide_Compact

description: Guide's software and data repository- compact version
DOI: 10.6084/m9.figshare.13106132.v1
title: Radiocarbon

description: Radiocarbon analyses of soil and saprock at four study sites located along an elevation transect, from 405 m to 2700 m, on the western slope of the southern Sierra Nevada, California.
DOI: 10.6084/m9.figshare.26324098.v1
title: Supplementary Material for: Palmitic acid modulation of the insulin-like growth factor system in hypothalamic astrocytes and neurons

description: Introduction: Insulin-like growth factor (IGF)1 and IGF2 have neuroprotective effects, but less is known regarding how other members of the IGF system, including IGF binding proteins (IGFBPs) and the regulatory proteinase pappalysin-1 (PAPP-A) and its endogenous inhibitor stanniocalcin-2 (STC2) participate in this process. Here we analyzed whether these members of the IGF system are modified in neurons and astrocytes in response to palmitic acid (PA), a fatty acid that induces cell stress when increased centrally.
Methods: Primary hypothalamic astrocyte cultures from male and female PND2 rats and the pro-opiomelanocortin (POMC) neuronal cell line, mHypoA-POMC/GFP-2, were treated with PA, IGF1 or both. To analyze the role of STC2 in astrocytes, siRNA assays were employed. 
Results: In astrocytes of both sexes, PA rapidly increased cell stress factors followed by increased Pappa and Stc2 mRNA levels and then a decrease in Igf1, Igf2 and Igfbp2 expression and cell number. Exogenous IGF1 did not revert these effects. In mHypoA-POMC/GFP-2 neurons, PA reduced cell number and Pomc and Igf1 mRNA levels, and increased Igfbp2 and Stc2, again with no effect of exogenous IGF1. PA increased STC2 expression, but no effect of decreasing its levels by interference assays or exogenous STC2 treatment in astrocytes were found.
Conclusions: The response of the IGF system to PA was cell and sex specific, but no protective effects of the IGFs were found. However, the modifications in hypothalamic PAPP-A and STC2 indicate that further studies are required to determine their role in the response to fatty acids and possibly in metabolic control.
DOI: 10.17632/kxsvzhcfgs
title: TEM virus images: benchmark dataset and deep learning classification - CODE

description: This dataset contains the source code and trained weights for two deep learning models described in our paper.
DOI: 10.6084/m9.figshare.25526275.v1
title: mediating role of digital literacy.sav

description: the research data for digital literacy, lifelong earning tendency, 21st century skills
DOI: 10.6084/m9.figshare.5967130.v3
title: Structural Dataset With Defect Labels for IaC Scripts

description: Structural properties and defect status of infrastructure as code scripts<br>
DOI: 10.6084/m9.figshare.9948158.v1
title: Mouse list of RNA-seq datasets before and after hypoxic stress

description: List of public gene expression database (NCBI GEO and EBI ArrayExpress) IDs before and after hypoxic stress in mouse. Gene expression measured by RNA-seq.<br>
DOI: 10.17632/hdkhhsjv8n
title: Malignant progression of liver cancer progenitors requires KAT7-acetylated and cytoplasm-translocated G-protein GαS

description: Malignant progression of liver cancer progenitors requires KAT7-acetylated and cytoplasm-translocated G-protein GαS
DOI: 10.6084/m9.figshare.11879202.v2
title: Accession Numbers

description: This table contains all of the accession numbers for the viral genomes contained within this data set.
DOI: 10.6084/m9.figshare.12672359.v1
title: Gene database of Methylococcus capsulatus strain Bath

description: <i>Methylococcus capsulatus</i> is an obligate methanotrophic Gram-negative non-motile coccid bacterium. Able to metabolize methane and methanol, the microorganism has been used in the production of animal feed from natural gas. Much remains to be known about this bacterium that typically presents itself in the diplococcoid mode. This work sought to unveil the genetic repertoire of <i>M. capsulatus</i> strain Bath with annotated genome sequence downloaded from Genbank. Using an in-house MATLAB software, the annotated genome sequence of the bacterium was parsed into a database comprising gene name, gene function, and gene sequence. The resource should be useful for the molecular cloning of interesting genes for exploring their biotechnological potential in other species such as <i>Escherichia coli</i>, as well as informing genome editing research in constructing loss-of-function mutants for understanding gene function in the bacterium.
DOI: 10.6084/m9.figshare.13237067.v1
title: Madidi Project - Full Dataset - version 4.1

description: This item contains version 4.1 of the Madidi Project's full dataset. The zip file contains: (1) raw data, which was downloaded from Tropicos (www.tropicos.org) on September 7 2020; (2) R scripts used to modify, correct and clean the raw data; (3) clean data that are the output of the R scripts, and which are the point of departure for most uses of the Madidi Dataset; (4) additional post-cleaning scripts that obtain some additional but non-essential information from the clean data (e.g. by extracting environmental data from rasters); (5) and a miscellaneous collection of additional non-essential information and figures. This item also includes the Data Use Policy for these data.<br>The Madidi Project is a collaborative research effort to document and study plant biodiversity in the Amazonia and Tropical Andes of northwestern Bolivia. The project is currently lead by the Missouri Botanical Garden (MBG), in collaboration with the Herbario Nacional de Bolivia. The management of the project is at MBG, where J. Sebastian Tello (sebastian.tello@mobot.org) is the scientific director and Olga Martha Montiel (olgamartha.montiel@mobot.org) is the administrative director. The directors oversee the activities of a research team based in Bolivia. MBG works in collaboration with other data contributors (currently: Manuel J. Macía [manuel.macia@uam.es], Gabriel Arellano [gabriel.arellano.torres@gmail.com] and Beatriz Nieto [sonneratia@gmail.com]), with a representative from the Herbario Nacional de Bolivia (LPB; Carla Maldonado [carla.maldonado1@gmail.com]), as well as with other close associated researchers from various institutions. For more information regarding the organization and objectives of the Madidi Project, you can visit the project’s website (www.madidiproject.weebly.com).<br>
DOI: 10.6084/m9.figshare.21761429.v1
title: Data.xlsx

description: This is all the original data in the paper.
DOI: 10.6084/m9.figshare.22938797.v1
title: A UAV-based vegetation index dataset for assessing plant traits in major crop species

description: Authors: Diogo Castilho1,2*, Danilo Tedesco3, Carlos Hernandez3, Beata E. Madari1,2, Ignacio Ciampitti3* <br> 1 Graduate Program in Agronomy, Federal University of Goiás, Goiânia, GO, Brazil 2 Brazilian Agricultural Research Corporation (Embrapa Rice and Beans), Santo Antônio de Goiás, GO, Brazil. 3 Department of Agronomy, Kansas State University, 1712 Claflin Rd., Manhattan, KS, 66506, USA A new dataset was described and summarized the state of the art in drone-based plant traits assessment, resulting from a systematic search of Scopus and Web of Science databases. This dataset contains the result of extracting data of 14 plant traits (yield [t ha-1], plant N density [g m-2], plant N concentration [%], plant N accumulation [g m-2], NUE - plant N content [kg ha-1], NNI, N uptake [kg ha-1], N rate [kg ha-1], leaf N density [g m-2], leaf N content [g m-2], leaf N concentration [%], leaf N accumulation [g m-2], canopy N content [g m-2], and biomass [t ha-1]) from 41 papers with a total of 11189 observations for 11 major crop species from 13 countries around the globe. <br> Many vegetation indices derived from unmanned aerial vehicle could track the relative yield, N uptake, and leaf N concentration in wheat, cotton and rice species. This method may not only be used to evaluate the N management practices but also may have application in making in-season N management decisions. Furthermore, this dataset is relevant to develop precise and broad diagnostic of N nutritional status of wide crop species in different sites and conditions. <br> For more information related to this dataset or codes, please contact the corresponding author at: diogocastilho6@hotmail.com <br> For cite the dataset, please use: Castilho, D., Tedesco, D., Hernandez, C., Madari, E. B., Ciampitti, I. A UAV-based vegetation index dataset for assessing plant traits in major crop species. figshare https://figshare.com/s/177cdcd70963a415925b (2023).
DOI: 10.6084/m9.figshare.3822291.v2
title: European average tree age gridded data 2000-2010

description: The average age of the forest within a cell and the percent share of each individual age class<br>Age classes in years: 1 = 0-20, 2 = 21-40, 3 = 41-60, 4 = 61-80, 5 = 81-100, 6 = 101-120, and 7 = 121-140, 8 = &gt;140
DOI: 10.6084/m9.figshare.4249685.v1
title: Model code 1:ESM Pavlova etal CODE Allee RC from Allee effect in polar bears: a potential consequence of polychlorinated biphenyls contamination

description: Model code: random-rule competition
DOI: 10.17632/xfc98xd2dg
title: An Urban Based Epidemiological Study of Sarcopenia, Dynapenia and Frailty in Community Dwelling Individuals of Belagavi City, India

description: Objectives: Aging is associated with progressive loss of skeletal muscle mass (sarcopenia) and strength (dynapenia) and frailty that can lead to mobility issues, falls/fractures, impaired functional abilities. Meager epidemiological data exist on occurrence of these conditions in Indian based regions. Hence, aim of the study was to create epidemiological data about sarcopenia, dynapenia and frailty in a cross-section of community dwelling individuals in Belagavi city of India.
Methods: A cross section of individuals above 40years with and without comorbidities were included in the study. They were screened for skeletal muscle mass expressed as appendicular skeletal muscle index using body composition analyzer, dominant hand grip strength with Jamar hand dynamometer and physical performance by gait speed using 4-metre walk test. The cut-offs for measurements for diagnosis was as per Asian Working Group for Sarcopenia.
Results: A total of 217 men and 283 women were enrolled for the study. The results depicted higher prevalence after age of 60years for Sarcopenia [89.89%], dynapenia [63.37%] and frailty [11.15%] when compared to those of 40-50years [46.47%, 61.18% and 0% respectively]. Irrespective of age, males [57.14%] were more sarcopenic than females [42.76%]. Men and women were equal with respect to dynapenia across all age groups. Frailty issues started only at 7th decade with females being frailer than males. 
Conclusions:  With advanced age, there is higher prevalence of sarcopenia, dynapenia and frailty. Men were more sarcopenic than females. Both genders were equally dynapenic across age classes with women being frailer than males after 70+ years of age.
DOI: 10.6084/m9.figshare.21583272.v2
title: Linear and thermo-optically generated nonlinear optical response of bovine serum albumin and its constituent amino acids in continuous wave z-scan

description: The dataset includes the results of z-scan results of BSA and 12 of its constituent amino acids. The Dataset1 includes the Raw data files in CSV format, the Dataset2 includes Excel files of the processed data and calculations, the Dataset3 includes the data related to Fig 5 in the article, the Dataset4 includes the data related to Fig 6 and Fig 7 and Dataset5 includes the excel files of z-scan results of 5 samples at different concentrations
DOI: 10.6084/m9.figshare.8668127.v1
title: Wave fetch GIS layers for Europe at 100m scale

description: This data layer gives values of summed wave fetch in 32 angular sectors around focal cells, using a model modified from that given in Burrows et al (2012 - see reference). Wave fetch is the distance to the nearest land in a defined direction. The model performs a three-scale search for land around each cell in the model, sparsely (every 10km) up to 200km, every 1km up to 20km away, and every 100m up to 1km distant. Fetch is calculated up to 5km from the coastline. <br>Values represent the summed number of grid cells to the nearest land across all 32 11.5° sectors. The file is a GeoTIFF using the WGS84 projection.
DOI: 10.17632/hgxc3rbzvm
title: Code and Data Sample for JFE Article "The Jump Leverage Risk Premium"

description: This replication package includes data and code for generating key measures, Tables and Figures in the paper "The Jump Leverage Risk Premium".
DOI: 10.17632/w4t73tvrf8
title: Coconut tree crown

description: Coconut tree crown images collected during a harvest season in a commercial coconut plantation. A total of 400 Red-Green-Blue (RGB) images (of size 512 × 512 pixels) acquired during daylight between 8:00 to 17:00 (morning to evening) under natural lighting conditions, using a handheld digital single-lens reflex (DSLR) camera. The experimenter stood on the ground near the tree trunk and used the camera to photograph the tree crown. Images were collected at different positions (elevation), angles and lighting conditions (frontal, back, and scattered lighting).
DOI: 10.6084/m9.figshare.1254624.v1
title: MovieLens Search

description: This dataset contains all of the search events for users of the MovieLens recommender engine.
DOI: 10.6084/m9.figshare.24590736.v2
title: Book1.xlsx

description: test
DOI: 10.6084/m9.figshare.25866919.v1
title: Molecular characterization of complete mitogenome of hard ground barasingha (<i>Rucervus duvaucelii</i> <i>branderi)</i>

description: The mitogenome of hard ground barasingha was recorded 16407bp in size, with an average coverage of 50.85X with the reference sequence JN632696. The total length of concatenated 13 protein coding genes (PCGs) in the mitogenome of the species was found to be 11461bp which accounted for 69.85% of the complete mitogenome. The A+T content of the 13PCGs in the mitogenome was estimated to be 62.31%. The G+C content of the transfer RNA (tRNA) genes ranged from 20.3% (<i>trn</i><i>Arg</i>) to 45.2% (<i>trn</i><i>Asn</i>). All t RNA gene sequences formed secondary cloverleaf structures, except <i>trn</i><i>Ser2</i>. Two repeated hepta nucleotide motifs (‘ttttccc’ and ‘gtacata’) were observed in the control region. Tha At and GC skews of protein coding genes were compared with other members cervidae family.
DOI: 10.6084/m9.figshare.26075473.v1
title: Analysis of mechanical heterogeneity of Chang’e-5 lunar breccia clast: Implications for elastic modulus of lunar rock

description: This research employed the Bayesian deconvolution method to analyze the mechanical heterogeneity of lunar breccia clast and further estimated the elastic modulus range of lunar rocks based on the grid nanoindentation tests on China's Chang'e-5 lunar samples.
DOI: 10.6084/m9.figshare.11353550.v1
title: Supplementary Material for: Brusatol Protects HepG2 Cells against Oxygen-Glucose Deprivation-Induced Injury via Inhibiting Mitochondrial Reactive Oxygen Species-Induced Oxidative Stress

description: <b><i>Background:</i></b> It has been reported that brusatol (BRU) reduces cellular reactive oxygen species (ROS) level under hypoxia; here the protective effect of BRU against oxygen-glucose deprivation/reoxygenation (OGD-R)-induced injury in HepG2 cells and against anoxia/reoxygenation (A/R)-induced injury in rat liver mitochondria was investigated. <b><i>Materials and Methods:</i></b> OGD-R-induced HepG2 cell viability loss was detected by 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide and trypan blue staining. Mitochondrial ROS level in HepG2 cells was measured by MitoSOX staining. The cellular malondialdehyde and adenosine triphosphate level was measured by commercial kits. The mitochondrial membrane potential in HepG2 cells was measured by JC-1 staining. The protein level was detected by Western blotting. Rat liver mitochondria were separated by differential centrifugation. A/R-induced injury in isolated rat liver mitochondria was established by using a Clark oxygen electrode. The ROS generation in isolated mitochondria was evaluated using Amplex red/horseradish peroxidase. <b><i>Results:</i></b> BRU reduced mitochondrial ROS level and alleviated oxidative injury in HepG2 cells, thereby significantly inhibited OGD-R-induced cell death. During OGD-R, BRU improved mitochondrial function and inhibited the release of cytochrome c. Furthermore, BRU showed a clear protective effect against A/R-induced injury in isolated rat liver mitochondria. When isolated rat liver mitochondria were pretreated with BRU, A/R-induced ROS generation was significantly decreased, and mitochondrial respiratory dysfunction was ameliorated. <b><i>Conclusions:</i></b> BRU pretreatment attenuated OGD-R-induced injury in HepG2 cells and A/R-induced injury in isolated rat liver mitochondria by inhibiting mitochondrial ROS-induced oxidative stress.
DOI: 10.6084/m9.figshare.13056524.v1
title: corn leaf tip pixel annotations and images

description: <b>corn_leaf_tip_pixel.csv</b>The annotation of leaf tips file in tab separated csv format includes leaf tip coordinates and leaf tip types in each corn image.<br><br><b>1st column</b>: experiment from which the image was generated. 'corn_exp1' was conducted in 2018 and 'corn_exp23' was conducted in 2019.<br><b>2nd column</b>: image filename. Taking '402-073-N1-WW-1_2019-05-02_09-50-30.977_Vis_SV_108.jpg' as an example, '402-073-N1-WW-1' is the plant identifier in the greenhouse; '2019-05-02' is the imaging date following yyyy-mm-dd format; '09-50-30.977' is the imaging time in hh-mm-ss format; 'Vis_SV_108' indicates the image was photographed in the viewing angle of 108.<br><b>3rd column</b>: the genotype name.<br><b>4th column:</b> number of intact leaf tips<br><b>5th column</b>: number of damaged or cut leaf tips<br><br><b>6th column:</b> number of invisible leaf tips due to occlusions<br><br><b>7th column:</b> the coordinates for intact and damaged leaf tips. this data can be loaded as a python dict using json.loads function.<br><b>corn_leaf_tip_pixel.tar</b><br>All 12,229 corn images emerged in the annotation csv file. <br>
DOI: 10.6084/m9.figshare.25824532.v1
title: impact of generative AI on PLEs

description: how undergraduates understand the effects, usage and challenges of generative AI in personalized learning environment.
DOI: 10.6084/m9.figshare.3553479.v1
title: Appendix E. Phytoplankton genus richness as a function of treatment combinations.

description: Phytoplankton genus richness as a function of treatment combinations.
DOI: 10.17632/j9kjd5w2fj
title: dataset Brexit and FDI

description: The dataset for the paper NAVIGATING UNCERTAINTY: THE EFFECTS OF BREXIT ON FOREIGN DIRECT INVESTMENT IN THE UNITED KINGDOM, Journal of Applied Economics.
DOI: 10.17632/symprw3z6t
title: Data for: Synthesis of micellar-like terpolymer nanoparticles with reductively-cleavable cross-links and evaluation of efficacy in 2D and 3D models of triple negative breast cancer

description: FACS and Confocal microscopy data
DOI: 10.6084/m9.figshare.5504851.v1
title: Collection of 791 Traditional Chinese Medicine books

description: A collection of 791 ancient Traditional Chinese Medicine books in txt format. These files are based on the Medical Collection of Dai Zhi Ge www.daizhige.org/医藏/<br>
DOI: 10.6084/m9.figshare.7335242.v3
title: Human MNI Adult Templates

description: Data from http://nist.mni.mcgill.ca/:<br>Copyright (C) 1993-2009 Louis Collins, McConnell BrainImaging Centre, Montreal Neurological Institute, McGill University.Permission to use, copy, modify, and distribute this software andits documentation for any purpose and without fee is hereby granted,provided that the above copyright notice appear in all copies. Theauthors and McGill University make no representations about thesuitability of this software for any purpose. It is provided "asis" without express or implied warranty. The authors are notresponsible for any data loss, equipment damage, property loss, orinjury to subjects or patients resulting from the use or misuse ofthis software package. <br>Copyright (C) 2016-2018 Yiming Xiao, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.Permission to use, copy, modify, and distribute this software andits documentation for any purpose and without fee is hereby granted,provided that the above copyright notice appear in all copies. Theauthors and McGill University make no representations about thesuitability of this software for any purpose. It is provided "asis" without express or implied warranty. The authors are notresponsible for any data loss, equipment damage, property loss, orinjury to subjects or patients resulting from the use or misuse ofthis software package. <br><br>See licenses for more information.<br>
DOI: 10.15131/shef.data.5537269.v1
title: Supporting Open Research: the role of an academic library

description: My keynote presentation from the "Better Science Through Better Data" conference, Wednesday 25 October 2017.
DOI: 10.17632/dkgsmtjf2g
title: Numerical data for "Resolved CFD-DEM simulations of the hydraulic conveying of coarse grains through a very-narrow elbow"

description: This dataset contains details of the resolved numerical simulation of a hydraulic conveying of coarse grains through a very-narrow elbow with horizontal and vertical sections. The simulations were carried out using the open-source CFDEM code. An example case with a particle-rate of 50 particles/s and a fluid velocity of 0.06 m/s is provided, as well as its results for a 10 s simulation and the Octave code that post-process the main informations of the particles.