cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0982681.10fu
title: SH0982681.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.hewcz4
title: Occurrence Download

description: A dataset containing 552565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 552565 records from 449 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109628-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24514789.v1
title: Data and Results Summary Tables

description: Data and data analysis results summary spreadsheets for the RNA-seq and phosphoprotein datasets.
DOI: 10.6084/m9.figshare.16650395.v1
title: Additional file 1 of Characterization and genomic analysis of the first Oceanospirillum phage, vB_OliS_GJ44, representing a novel siphoviral cluster

description: Additional file1: Table S1. Genome annotation of phage vB_OliS_GJ44.
DOI: 10.6084/m9.figshare.23553222
title: Early evolution of Earth directed Coronal mass ejections in the vicinity of Coronal Holes

description: This spreadsheet has two sheets. 
<br>
Table1 contains information about the GCS reconstruction details. The date and time of the first C2 appearance is given in the first and second column.  Type of low coronal signature and number of time steps that performed by GCS reconstruction is given in column 3 and 4. Stealthy CMEs are marked with an asterisk symbol in the first column. Columns 5 and 6 contain the start and end times of the GCS reconstruction. The asterisk symbol in the fifth and sixth columns indicates that the time frame is taken on the previous and next day, respectively. Start and end longitude, latitude, inclination and heights are given in columns 7 to 14. The ratio and half angle are given in the columns 15 and 16. The 3D speed of each CME is given in the last column.
<br>
Table2: 
The properties of the CHs associated with the CMEs are listed in Table2. The date of the event and the position of the source inferred from the low coronal signature are given in the first and second columns, respectively. Columns 3 and 4 contain the deflection in longitude and latitude estimated from the low coronal signature to the first GCS reconstruction. The deflection and rotation estimated from the GCS reconstructions are given in columns 5 to 7. The number of CHs associated with each CME is listed in column 8. The position of CH, the distance between the CME and CH, and the area of CH are given in columns 9 to 11. The magnetic field calculated using CATCH tool is given In column 12, The total values of CHIP1, CHIP2, and CHIP3 of the respective CMEs are listed in the last three columns.
DOI: 10.6084/m9.figshare.23553222.v2
title: Early evolution of Earth directed Coronal mass ejections in the vicinity of Coronal Holes

description: This spreadsheet has two sheets. 
<br>
Table1 contains information about the GCS reconstruction details. The date and time of the first C2 appearance is given in the first and second column.  Type of low coronal signature and number of time steps that performed by GCS reconstruction is given in column 3 and 4. Stealthy CMEs are marked with an asterisk symbol in the first column. Columns 5 and 6 contain the start and end times of the GCS reconstruction. The asterisk symbol in the fifth and sixth columns indicates that the time frame is taken on the previous and next day, respectively. Start and end longitude, latitude, inclination and heights are given in columns 7 to 14. The ratio and half angle are given in the columns 15 and 16. The 3D speed of each CME is given in the last column.
<br>
Table2: 
The properties of the CHs associated with the CMEs are listed in Table2. The date of the event and the position of the source inferred from the low coronal signature are given in the first and second columns, respectively. Columns 3 and 4 contain the deflection in longitude and latitude estimated from the low coronal signature to the first GCS reconstruction. The deflection and rotation estimated from the GCS reconstructions are given in columns 5 to 7. The number of CHs associated with each CME is listed in column 8. The position of CH, the distance between the CME and CH, and the area of CH are given in columns 9 to 11. The magnetic field calculated using CATCH tool is given In column 12, The total values of CHIP1, CHIP2, and CHIP3 of the respective CMEs are listed in the last three columns.
DOI: 10.6084/m9.figshare.23553222.v1
title: Early evolution of Earth directed Coronal mass ejections in the vicinity of Coronal Holes

description: This spreadsheet has two sheets. 
<br>
Table1 contains information about the GCS reconstruction details. The date and time of the first C2 appearance is given in the first and second column.  Type of low coronal signature and number of time steps that performed by GCS reconstruction is given in column 3 and 4. Stealthy CMEs are marked with an asterisk symbol in the first column. Columns 5 and 6 contain the start and end times of the GCS reconstruction. The asterisk symbol in the fifth and sixth columns indicates that the time frame is taken on the previous and next day, respectively. Start and end longitude, latitude, inclination and heights are given in columns 7 to 14. The ratio and half angle are given in the columns 15 and 16. The 3D speed of each CME is given in the last column.
<br>
Table2: 
The properties of the CHs associated with the CMEs are listed in Table2. The date of the event and the position of the source inferred from the low coronal signature are given in the first and second columns, respectively. Columns 3 and 4 contain the deflection in longitude and latitude estimated from the low coronal signature to the first GCS reconstruction. The deflection and rotation estimated from the GCS reconstructions are given in columns 5 to 7. The number of CHs associated with each CME is listed in column 8. The position of CH, the distance between the CME and CH, and the area of CH are given in columns 9 to 11. The magnetic field calculated using CATCH tool is given In column 12, The total values of CHIP1, CHIP2, and CHIP3 of the respective CMEs are listed in the last three columns.
DOI: 10.6084/m9.figshare.8786294
title: Additional file 2. of Serum complement C4 is an important prognostic factor for IgA nephropathy: a retrospective study

description: Data. (XLSX 509 kb)
DOI: 10.5281/zenodo.10691443
title: 2021 Water Surface in the Hindu Kush Himalaya

description:   The Hindu Kush Himalaya (HKH) is known as the “Water Tower of Asia”, where water influences changes in the global water cycle and ecosystem.  It is very important for this region to efficiently measure the status of water and monitor its changes. We proposed  a deep learning network based on the state-of-the-art vision Transformer and used it to extract water surface from Sentinel-2 images of the Hindu Kush Himalaya region. This region covers 594 tiles of Sentinel-2 images. Since July to October is the rainy season in the HKH region, we used the images with less than 20% cloud cover during this period in 2021 to extract water surface.The water surface extraction results with different dates from the same tile were composited using a maximum-area algorithm, and the composited results were merged to form the water surface extraction result of the HKH region. The Water Surface product is shared in the form of shpfile.
DOI: 10.5281/zenodo.10691444
title: 2021 Water Surface in the Hindu Kush Himalaya

description:   The Hindu Kush Himalaya (HKH) is known as the “Water Tower of Asia”, where water influences changes in the global water cycle and ecosystem.  It is very important for this region to efficiently measure the status of water and monitor its changes. We proposed  a deep learning network based on the state-of-the-art vision Transformer and used it to extract water surface from Sentinel-2 images of the Hindu Kush Himalaya region. This region covers 594 tiles of Sentinel-2 images. Since July to October is the rainy season in the HKH region, we used the images with less than 20% cloud cover during this period in 2021 to extract water surface.The water surface extraction results with different dates from the same tile were composited using a maximum-area algorithm, and the composited results were merged to form the water surface extraction result of the HKH region. The Water Surface product is shared in the form of shpfile.
DOI: 10.6084/m9.figshare.8786294.v2
title: Additional file 2. of Serum complement C4 is an important prognostic factor for IgA nephropathy: a retrospective study

description: Data. (XLSX 509 kb)
DOI: 10.6084/m9.figshare.8786294.v1
title: Additional file 2. of Serum complement C4 is an important prognostic factor for IgA nephropathy: a retrospective study

description: Data. (XLSX 509 kb)
DOI: 10.6084/m9.figshare.12980636
title: Geochemical and seismic tomography constraints on the two-layer magma chamber of Late Cenozoic volcanic activities from Ulleung Island: A comparison with Mt. Changbai (Paektu)

description: Tables 1-2; Appendix 1-5; Geochemical and seismic tomography constraints on the two-layer magma chamber of Late Cenozoic volcanic activities from Ulleung Island: A comparison with Mt. Changbai (Paektu)
DOI: 10.6084/m9.figshare.8786540
title: Additional file 6: of Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

description: Table S1. DEGs in local TYLCV infections (XLSX 1067 kb)
DOI: 10.6084/m9.figshare.8786540.v1
title: Additional file 6: of Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

description: Table S1. DEGs in local TYLCV infections (XLSX 1067 kb)
DOI: 10.25919/k7p7-zw87
title: Parkes observations for project P1054 semester 2023OCTS_13

description: With this proposal we ask time to continue our timing follow-up campaign of pulsars discovered with the MeerKAT telescope. Twentyfive sources have been discovered in targeted observations of Fermi unidentified point sources, one in association with a Supernova Remnant, 13 in the Magellanic Clouds, 72 in Globular Clusters and 78 in a survey of the Galactic plane. A large fraction of the new discoveries are recycled pulsars (including at least one double neutron star system and several 'spider' binaries), or young pulsars. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that is allowing us to successfully time these new sources, in the bright-end of TRAPUM discoveries.
DOI: 10.6084/m9.figshare.8786549
title: Additional file 7: of Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

description: Table S2. Reads mapping to the viral genome in local and systemic infections (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8786549.v1
title: Additional file 7: of Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

description: Table S2. Reads mapping to the viral genome in local and systemic infections (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8262320
title: Flowability of the filling slurry from Trans-scale relationship analysis between the pore structure and macro parameters of backfill and slurry.

description: Figure 3's data
DOI: 10.6084/m9.figshare.8262320.v2
title: Flowability of the filling slurry from Trans-scale relationship analysis between the pore structure and macro parameters of backfill and slurry.

description: Figure 3's data
DOI: 10.6084/m9.figshare.8262320.v1
title: Flowability of the filling slurry from Trans-scale relationship analysis between the pore structure and macro parameters of backfill and slurry

description: Figure 3's data
DOI: 10.6084/m9.figshare.8262323
title: Particle size distribution of the raw materials from Trans-scale relationship analysis between the pore structure and macro parameters of backfill and slurry.

description: Figure 1's data
DOI: 10.6084/m9.figshare.8262323.v2
title: Particle size distribution of the raw materials from Trans-scale relationship analysis between the pore structure and macro parameters of backfill and slurry.

description: Figure 1's data
DOI: 10.6084/m9.figshare.8262323.v1
title: Particle size distribution of the raw materials from Trans-scale relationship analysis between the pore structure and macro parameters of backfill and slurry

description: Figure 1's data
DOI: 10.6084/m9.figshare.8786615
title: MOESM1 of Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort

description: Additional file 1. Model cohort dataset.
DOI: 10.6084/m9.figshare.8786615.v1
title: MOESM1 of Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort

description: Additional file 1. Model cohort dataset.
DOI: 10.6084/m9.figshare.8786624
title: MOESM2 of Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort

description: Additional file 2. Validation cohort dataset.
DOI: 10.6084/m9.figshare.8786624.v1
title: MOESM2 of Comprehensive bioinformatics analysis reveals potential lncRNA biomarkers for overall survival in patients with hepatocellular carcinoma: an on-line individual risk calculator based on TCGA cohort

description: Additional file 2. Validation cohort dataset.
DOI: 10.6084/m9.figshare.17176070
title: A bivalent live-attenuated vaccine candidate elicits protective immunity against human adenovirus types 4 and 7

description: Human adenovirus types 4 (HAdV4) and 7 (HAdV7) often lead to severe respiratory diseases and occur epidemically in children, adults, immune deficiency patients, and other groups, leading to mild or severe symptoms and even death. However, no licensed adenovirus vaccine has been approved in the market for general use. E3 genes of adenovirus are generally considered nonessential for virulence and replication; however, a few studies have demonstrated that the products of these genes are also functional. In this study, most of the E3 genes were deleted, and two E3-deleted recombinant adenoviruses (ΔE3-rAdVs) were constructed as components of the vaccine. After E3 deletion, the replication efficiencies and cytopathogenicity of ΔE3-rAdVs were reduced, indicating that ΔE3-rAdVs were attenuated after E3 genes deletion. Furthermore, single immunization with live-attenuated bivalent vaccine candidate protects mice against challenge with wild-type human adenovirus types 4 and 7, respectively. Vaccinated mice demonstrated remarkably decreased viral loads in the lungs and less lung pathology compared to the control animals. Taken together, our study confirms the possibility of the two live-attenuated viruses as a vaccine for clinic use and illustrates a novel strategy for the construction of an adenovirus vaccine.
DOI: 10.6084/m9.figshare.17176070.v1
title: A bivalent live-attenuated vaccine candidate elicits protective immunity against human adenovirus types 4 and 7

description: Human adenovirus types 4 (HAdV4) and 7 (HAdV7) often lead to severe respiratory diseases and occur epidemically in children, adults, immune deficiency patients, and other groups, leading to mild or severe symptoms and even death. However, no licensed adenovirus vaccine has been approved in the market for general use. E3 genes of adenovirus are generally considered nonessential for virulence and replication; however, a few studies have demonstrated that the products of these genes are also functional. In this study, most of the E3 genes were deleted, and two E3-deleted recombinant adenoviruses (ΔE3-rAdVs) were constructed as components of the vaccine. After E3 deletion, the replication efficiencies and cytopathogenicity of ΔE3-rAdVs were reduced, indicating that ΔE3-rAdVs were attenuated after E3 genes deletion. Furthermore, single immunization with live-attenuated bivalent vaccine candidate protects mice against challenge with wild-type human adenovirus types 4 and 7, respectively. Vaccinated mice demonstrated remarkably decreased viral loads in the lungs and less lung pathology compared to the control animals. Taken together, our study confirms the possibility of the two live-attenuated viruses as a vaccine for clinic use and illustrates a novel strategy for the construction of an adenovirus vaccine.
DOI: 10.6084/m9.figshare.24516137
title: Network pharmacology-and molecular docking-based investigation of Danggui blood-supplementing decoction in ischaemic stroke

description: Danggui blood-supplementing decoction (DBsD) is an herbal preparation treating several diseases including stroke. The present study sought to investigate the potential mechanism of DBsD in ischaemic stroke (IS) using network pharmacology, molecular docking, and cell experiment. Based on the protein-protein (PPI) network analysis, MAPK1 (0.51, 12), KNG1 (0.57, 28), and TNF (0.64, 39) were found with relatively good performance in degree and closeness centrality. The functional enrichment analysis revealed that DBsD contributed to IS-related biological processes, molecule function, and presynaptic/postsynaptic cellular components. Pathway enrichment indicated that DBsD might protect IS by modulating multi-signalling pathways including the sphingolipid signalling pathway. Molecular docking verified the stigmasterol-KNG1, bifendate-TNF, and formononetin-MAPK1 pairs. Cell experiments confirmed the involvement of KNG1 and sphingolipid signalling pathway in hippocampal neuronal cell apoptosis. This study showed that DBsD can protect neuronal cell injury after IS through multiple components, multiple targets, and multiple pathways.
DOI: 10.6084/m9.figshare.24516137.v1
title: Network pharmacology-and molecular docking-based investigation of Danggui blood-supplementing decoction in ischaemic stroke

description: Danggui blood-supplementing decoction (DBsD) is an herbal preparation treating several diseases including stroke. The present study sought to investigate the potential mechanism of DBsD in ischaemic stroke (IS) using network pharmacology, molecular docking, and cell experiment. Based on the protein-protein (PPI) network analysis, MAPK1 (0.51, 12), KNG1 (0.57, 28), and TNF (0.64, 39) were found with relatively good performance in degree and closeness centrality. The functional enrichment analysis revealed that DBsD contributed to IS-related biological processes, molecule function, and presynaptic/postsynaptic cellular components. Pathway enrichment indicated that DBsD might protect IS by modulating multi-signalling pathways including the sphingolipid signalling pathway. Molecular docking verified the stigmasterol-KNG1, bifendate-TNF, and formononetin-MAPK1 pairs. Cell experiments confirmed the involvement of KNG1 and sphingolipid signalling pathway in hippocampal neuronal cell apoptosis. This study showed that DBsD can protect neuronal cell injury after IS through multiple components, multiple targets, and multiple pathways.
DOI: 10.6084/m9.figshare.21370941
title: Source Data.xlsx

description:  <strong>Improved pharmacodynamics of epidermal growth factor via microneedles-based self-powered transcutaneous electrical stimulation </strong>
DOI: 10.6084/m9.figshare.15079522
title: Additional file 1 of Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-κB/bone remodeling factors signaling

description: Additional file 1: Table S1. The original sequencing results of all differentially expressed circRNAs in six breast cancer (without BM) and six breast cancer (with BM) tissues.
DOI: 10.6084/m9.figshare.15079523
title: Additional file 2 of Enforcing ATP hydrolysis enhanced anaerobic glycolysis and promoted solvent production in Clostridium acetobutylicum

description: Additional file 2: Table S1. Specific metabolite consumption or production rate obtained by data fitting. Table S2. Specific growth rates obtained by data fitting. Table S3. Calculation of mass balance. Table S4. Average metabolic fluxes of 1731(pITF1) and 1731(pIMP1) in 0–30 h fermentation. Table S5. Mean and SD values of the computed NADH turnover rates for 1731(pIMP1) and 1731(pITF1) at 0, 6, 12, 18, 24 and 30 h.
DOI: 10.6084/m9.figshare.15079523.v1
title: Additional file 2 of Enforcing ATP hydrolysis enhanced anaerobic glycolysis and promoted solvent production in Clostridium acetobutylicum

description: Additional file 2: Table S1. Specific metabolite consumption or production rate obtained by data fitting. Table S2. Specific growth rates obtained by data fitting. Table S3. Calculation of mass balance. Table S4. Average metabolic fluxes of 1731(pITF1) and 1731(pIMP1) in 0–30 h fermentation. Table S5. Mean and SD values of the computed NADH turnover rates for 1731(pIMP1) and 1731(pITF1) at 0, 6, 12, 18, 24 and 30 h.
DOI: 10.6084/m9.figshare.15079525
title: Additional file 2 of Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-κB/bone remodeling factors signaling

description: Additional file 2: Table S2. Primers, Probes, siRNA, shRNA and ASOs used in this study.
DOI: 10.6084/m9.figshare.15079522.v1
title: Additional file 1 of Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-κB/bone remodeling factors signaling

description: Additional file 1: Table S1. The original sequencing results of all differentially expressed circRNAs in six breast cancer (without BM) and six breast cancer (with BM) tissues.
DOI: 10.6084/m9.figshare.15079528
title: Additional file 3 of Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-κB/bone remodeling factors signaling

description: Additional file 3: Table S3. Pathways of the Cignal Finder 45‐Pathway Arrays.
DOI: 10.6084/m9.figshare.15079525.v1
title: Additional file 2 of Circular RNA circIKBKB promotes breast cancer bone metastasis through sustaining NF-κB/bone remodeling factors signaling

description: Additional file 2: Table S2. Primers, Probes, siRNA, shRNA and ASOs used in this study.
DOI: 10.6084/m9.figshare.15079642
title: Additional file 5 of Comparative transcriptome analysis reveals regulatory network and regulators associated with proanthocyanidin accumulation in persimmon

description: Additional file 5.