cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4728959
title: Artifacts for ISSTA 2021 Paper : Validating Static Warnings via Testing Code Fragments

description: <strong>This data set is for ISSTA 2021 Paper: Validating Static Warnings via Testing Code Fragments</strong> Static analysis is an important approach for finding bugs and vulnerabilities in software. However, inspecting and confirming static warnings are challenging and time-consuming. In this paper, we present a novel solution that automatically generates test cases based on static warnings to validate true and false positives. We designed a syntactic patching algorithm that can generate syntactically valid, semantic preserving executable code fragments from static warnings. We developed a build and testing system to automatically test code fragments using fuzzers, KLEE and Valgrind. We evaluated our techniques using 12 real-world C projects and 1955 warnings from two commercial static analysis tools. We successfully built 68.5% code fragments and generated 1003 test cases. Through automatic testing, we identified 48 true positives and 27 false positives, and 205 likely false positives. We matched 4 CVE and real-world bugs using Helium, and they are only triggered by our tool but not other baseline tools. We found that testing code fragments is scalable and useful; it can trigger bugs that testing entire programs or testing procedures failed to trigger.
DOI: 10.34740/kaggle/dsv/2374808
title: Amazon Best Seller June 2021 Products
DOI: 10.6084/m9.figshare.14842716
title: Plasmodium schizont densities in culture grown with and without isoleucine, as well as isoleucine starvation for different durations of time

description: To test the effect of the amino acid isoleucine on the parasite asexual cycle we compared parasite developmental progression in cultures with and without isoleucine (50 mg/L), as well as after different durations (7, 14, 18 hours) of isoleucine starvation.
DOI: 10.6084/m9.figshare.14842716.v1
title: Plasmodium schizont densities in culture grown with and without isoleucine, as well as isoleucine starvation for different durations of time

description: To test the effect of the amino acid isoleucine on the parasite asexual cycle we compared parasite developmental progression in cultures with and without isoleucine (50 mg/L), as well as after different durations (7, 14, 18 hours) of isoleucine starvation.
DOI: 10.6084/m9.figshare.14842713
title: Plasmodium schizont proportion in culture grown with and without isoleucine

description: To test the effect of the amino acid isoleucine on the parasite asexual cycle we compared parasite developmental progression in cultures with and without isoleucine (50 mg/L), as well as after different durations (7, 14, 18 hours) of isoleucine starvation.
DOI: 10.6084/m9.figshare.14842713.v1
title: Plasmodium schizont proportion in culture grown with and without isoleucine

description: To test the effect of the amino acid isoleucine on the parasite asexual cycle we compared parasite developmental progression in cultures with and without isoleucine (50 mg/L), as well as after different durations (7, 14, 18 hours) of isoleucine starvation.
DOI: 10.6084/m9.figshare.14842695
title: Plasmodium chabaudi genotype DK parasite stages during time series

description: After infecting mice intravenously with 1×105 P. chabaudi DK genotype infected RBC at ring stage we made a thin blood smear on day 5 post infection and again every 2 hours to quantify parasite rhythms by counting ~100 parasites where possible per blood smear using compound microscopy. Following (Prior et al 2018, O’Donnell et al 2019 and Rijo-Ferreira et al 2020), we used the proportion of ring stages as a phase marker (an estimate of the timing of parasite development in the blood) of parasite rhythms.
DOI: 10.6084/m9.figshare.14842695.v1
title: Plasmodium chabaudi genotype DK parasite stages during time series

description: After infecting mice intravenously with 1×105 P. chabaudi DK genotype infected RBC at ring stage we made a thin blood smear on day 5 post infection and again every 2 hours to quantify parasite rhythms by counting ~100 parasites where possible per blood smear using compound microscopy. Following (Prior et al 2018, O’Donnell et al 2019 and Rijo-Ferreira et al 2020), we used the proportion of ring stages as a phase marker (an estimate of the timing of parasite development in the blood) of parasite rhythms.
DOI: 10.6084/m9.figshare.14842686.v1
title: Blood glucose concentration time series in mice infected with malaria parasites

description: Blood glucose concentration from 20 mice every 2 hours on day 5 post infection, with 1×105 P. chabaudi DK genotype infected red blood cells by intravenous injection, by taking 1 μl blood using an Accu-Chek Performa Nano glucometer (https://www.accu-chek.co.uk/blood-glucose-meters/performa- nano).
DOI: 10.6084/m9.figshare.14842686
title: Blood glucose concentration time series in mice infected with malaria parasites

description: Blood glucose concentration from 20 mice every 2 hours on day 5 post infection, with 1×105 P. chabaudi DK genotype infected red blood cells by intravenous injection, by taking 1 μl blood using an Accu-Chek Performa Nano glucometer (https://www.accu-chek.co.uk/blood-glucose-meters/performa- nano).
DOI: 10.6084/m9.figshare.14842638
title: Targeted metabolomics on malaria-infected mouse blood

description: We sampled mice in blocks (A-D), meaning each individual mouse was sampled every eight hours during the 26-hour sampling window, with 14 time points in total. We did not sample each mouse at each sampling point to minimise the total volume of blood being taken. We analysed blood plasma samples using the AbsoluteIDQ p180 targeted metabolomics kit (Biocrates Life Sciences AG, Innsbruck, Austria) and a Waters Xevo TQ-S mass spectrometer coupled to an Acquity UPLC system (Waters Corporation, Milford, MA, USA). We prepared the plasma samples (10 μl) according to the manufacturer’s instructions, adding several stable isotope–labelled standards to the samples prior to the derivatization and extraction steps. Using UPLC/MS (ultra performance liquid chromatography/mass spectrometry), we quantified 185 metabolites from 5 different compound classes (acylcarnitines, amino acids, biogenic amines, glycerophospholipids, and sphingolipids). We ran the samples on two 96-well plates, randomised the sample order and ran three levels of quality control (QC) on each plate. We normalised the data between the plates using the results of quality control level 2 (QC2) repeats across the plate (n=4) and between plates (n=2) using Biocrates METIDQ software (QC2 correction).
DOI: 10.6084/m9.figshare.14842638.v1
title: Targeted metabolomics on malaria-infected mouse blood

description: We sampled mice in blocks (A-D), meaning each individual mouse was sampled every eight hours during the 26-hour sampling window, with 14 time points in total. We did not sample each mouse at each sampling point to minimise the total volume of blood being taken. We analysed blood plasma samples using the AbsoluteIDQ p180 targeted metabolomics kit (Biocrates Life Sciences AG, Innsbruck, Austria) and a Waters Xevo TQ-S mass spectrometer coupled to an Acquity UPLC system (Waters Corporation, Milford, MA, USA). We prepared the plasma samples (10 μl) according to the manufacturer’s instructions, adding several stable isotope–labelled standards to the samples prior to the derivatization and extraction steps. Using UPLC/MS (ultra performance liquid chromatography/mass spectrometry), we quantified 185 metabolites from 5 different compound classes (acylcarnitines, amino acids, biogenic amines, glycerophospholipids, and sphingolipids). We ran the samples on two 96-well plates, randomised the sample order and ran three levels of quality control (QC) on each plate. We normalised the data between the plates using the results of quality control level 2 (QC2) repeats across the plate (n=4) and between plates (n=2) using Biocrates METIDQ software (QC2 correction).
DOI: 10.5281/zenodo.5035566
title: Moniruzzaman and Aylward, 2021

description: Additional data for Moniruzzaman and Aylward, 2021.
DOI: 10.5281/zenodo.4958214
title: Moniruzzaman and Aylward, 2021

description: Additional data for Moniruzzaman and Aylward, 2021.
DOI: 10.5281/zenodo.5035562
title: Climate Change Awareness in the Arab Barometer Wave 5 Survey

description: The Arab Barometer Wave V 2018-2019 is based on a nationally representative probability sample of the population aged 18 and above. In most countries, the sample includes 2,400 citizens. The data were conducted in face-to-face public opinion surveys (CAPI and PAPI). See technical reports by country for country-specific information. You can find the data, codebooks and all relevant information on the Arab Barometer website. Our dataset contains country weighted counts of different answer options and the re-weighted values of the answers given to the Arab Barometer Wave 5 question: Q108 : How serious a problem do you think the following issues are: Is climate change a very serious problem, a somewhat serious problem, not a very serious problem, not at all a serious problem? Get the country averages and aggregates from Zenodo Get the plot in jpg or png from figshare. See the detailed PDF documentation.
DOI: 10.5281/zenodo.5035561
title: Climate Change Awareness in the Arab Barometer Wave 5 Survey

description: The Arab Barometer Wave V 2018-2019 is based on a nationally representative probability sample of the population aged 18 and above. In most countries, the sample includes 2,400 citizens. The data were conducted in face-to-face public opinion surveys (CAPI and PAPI). See technical reports by country for country-specific information. You can find the data, codebooks and all relevant information on the Arab Barometer website. Our dataset contains country weighted counts of different answer options and the re-weighted values of the answers given to the Arab Barometer Wave 5 question: Q108 : How serious a problem do you think the following issues are: Is climate change a very serious problem, a somewhat serious problem, not a very serious problem, not at all a serious problem? Get the country averages and aggregates from Zenodo Get the plot in jpg or png from figshare. See the detailed PDF documentation.
DOI: 10.5281/zenodo.5015066
title: Rapid evolution of thermal tolerance and phenotypic plasticity in variable environments

description: These are the data and code to go with "<strong>Rapid evolution of thermal tolerance and phenotypic plasticity in variable environments</strong>" <strong>Figure 01 takes the following data/scripts:</strong> 20210610_Thally02_Figure01_plot_and_stats.R with track_keeper.csv and corr_Response growth .csv . These files contain growth rates per transfers for all selection environments throughout the experiment and growth rates in correlated environments during reciprocal transplants, respectively. <strong>Figure 02 takes the following data/scripts:</strong> 20210610_Thally02_Figure02_plot_and_stats.R with 20161120_res_logis_t000.csv and 20161123_resloglint300.csv . These files contain the output of the shapes of the growth curves (i.e. information on lag time , growth at µmax, K etc) for all samples in all selection environments at t0 and t300, respectively <strong>The remaining figures - position not clear at time of submission - take the following data/script. </strong> For plasticity in FRRF data, the script 20181204_FRRF_plasticity.R takes the FRRF raw data contained in allfvfmdata_thally_t300_t000.csv . Extracted parameters are in files CvaluesThally02.csv, psiPSI_slope_intercept.csv, and rP_extracted_values.csv and can be analysed using the R script extracted parameter plots.R . R script FRRF visualisation only .R is for visualisation only, as the title suggests. For comparing plasticity/growth , the data are in 20170327_giantbigtable.csv , and can be visualised/analysed in plast vs growth.R In order to recreate the AMOVAS based on SNVs, use all_variants_fixed-only_using_5x_depth_threshold.cvs with amova thally02.R For additional information, please contact elisa.schaum@uni-hamburg.de
DOI: 10.6084/m9.figshare.14854383
title: Supplemental Data.xlsx

description: Mutation data for Lymph Node metastasis study in CRC
DOI: 10.6084/m9.figshare.14854383.v1
title: Supplemental Data.xlsx

description: Mutation data for Lymph Node metastasis study in CRC
DOI: 10.5281/zenodo.7929064
title: Differential algebra mappings of CR3BP periodic solutions

description: This dataset is made of twenty-three items containing polynomial mappings of families of periodic solutions of the circular restricted 3-body problem (CR3BP) [1], here the Earth-Moon and the Sun-(Earth-Moon) systems. Each file stores a list of differential algebra (DA) [2] maps representing these families with their associated domains of definition. The DA maps were computed using DA solving of two-point boundary value problem [3] and allow one to access initial conditions of solutions of the CR3BP by polynomial evaluation instead of heavy computations, provided the files containing the DA polynomials [4]. Each family is available with three different accuracies, also called tolerances. They are, with increasing accuracy, 1e-5, 1e-8, and 1e-10. The most accurate ones have higher loading and evaluation times and use more disk space but give better approximations of the families. The code DAHALOa_reader allows to read these files and can on GitHub: ThomasClb/DAHALOa_reader (github.com) <strong>References</strong><br> [1] V. Szebehely, ‘Theory of Orbit', Academic Press, 1967, pp. 7-41. DOI: 10.1016/B978-0-12-395732-0.50007-6<br> [2] R. Armellin, P. Di Lizia, et al., ’Asteroid close encounters characterization using differential algebra: the case of Apophis', Celestial Mechanics and Dynamical Astronomy, Vol. 107, No. 4, 2010, pp. 451-470. DOI: 10.1007/s10569-010-9283-5<br> [3] P. Di Lizia, R. Armellin, and M. Lavagna, 'Application of high order expansions of two-point boundary value problems to astrodynamics', Celestial Mechanics and Dynamical Astronomy, Vol. 102, No. 4, 2008, pp. 355-375. DOI: 10.1007/s10569-008-9170-5<br> [4] T. Caleb, M. Losacco, A. Fossà, R. Armellin, and S. Lizy-Destrez, 'Differential algebra methods applied to continuous abacus generation and bifurcation detection: application to periodic families of the Earth–Moon system', Nonlinear dynamics, Vol. 111, 2023, pp. 9721-9740. DOI: 10.1007/s11071-023-08375-0
DOI: 10.34740/kaggle/dsv/5669483
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.15479/at:ista:12945
title: Data from: "Dynamic pathogen detection and social feedback shape collective hygiene in ants"

description: basic data for use in code for experimental data analysis for manuscript under revision: Dynamic pathogen detection and social feedback shape collective hygiene in ants Casillas-Pérez B, Boďová K, Grasse AV, Tkačik G, Cremer S
DOI: 10.48420/22801913
title: Data supporting publication entitled "Disentangling the impact of point defect density and carrier localisation enhanced Auger recombination on efficiency droop in (In,Ga)N/GaN quantum wells"

description: Phototluminescence intensity vs carrier density for three samples grown at different temperatures; Phototluminescence transients for these samples; Calculated radiative and Auger recombination coefficients.
DOI: 10.48420/22801913.v1
title: Data supporting publication entitled "Disentangling the impact of point defect density and carrier localisation enhanced Auger recombination on efficiency droop in (In,Ga)N/GaN quantum wells"

description: Phototluminescence intensity vs carrier density for three samples grown at different temperatures; Phototluminescence transients for these samples; Calculated radiative and Auger recombination coefficients.
DOI: 10.6084/m9.figshare.22197676
title: Coastal Storm Surge Reconstruction (CSSR) dataset

description: CSSR (Coastal Storm Surge Reconstruction) dataset comes from a novel regional all-site storm surge modeling framework based on machine learning, it covers the whole east coast of the United States and provides hourly surge levels over 60 years((from 1959-2020)
DOI: 10.6084/m9.figshare.22197676.v1
title: CSSR_5920.nc

description: CSSR (Coastal Storm Surge Reconstruction) dataset comes from a novel regional all-site storm surge modeling framework based on machine learning, it covers the whole east coast of the United States and provides hourly surge levels over 60 years((from 1959-2020)
DOI: 10.6084/m9.figshare.22811333
title: Excel workbook containing primary collected field data and further analyses

description: McLeod et al Supplementary dataset S3 S3a: Data log outlining collected datasets S3b: Cross-set height distributions S3c: Maximum cross-set height measurements S3d: Accretion and bedding measurements S3e: Package thickness measurements S3f: Woody debris measurements S3g: <em>CV</em> of cross-sets associated with woody debris S3h: Statistical test on cross-set heights between members S3i: Statistical test on <em>CV</em> between members S3j: Statistical test on <em>CV</em> between debris-associated and non-debris-associated cross-sets
DOI: 10.5285/fab73b69-21b9-5ae8-e053-6c86abc0960c
title: Triple oxygen isotopes and oxygen-argon ratios from CTD hydrocasts and underway seawater system on Shelf Sea Biogeochemistry (SSB) cruises DY018, DY026, DY029 and DY033 (2014-2015).

description: Samples have been collected from the Celtic Sea between August 2014 and July 2015 for the determination of triple oxygen isotopes and biological oxygen supersaturation, relative to air-saturated water. Samples were collected during four RRS Discovery cruises (DY018, DY026, DY029 and DY033), from both CTD hydrocasts and the ship's underway seawater supply. Dissolved gas concentrations and isotopologue ratios of molecular oxygen in water samples were determined by mass spectrometry and measurement results used for the calculation of net and gross oxygen production. This work was undertaken by the University of East Anglia as part of the NERC-funded Shelf Sea Biogeochemistry programme under work package 1: Carbon and Nutrient Dynamics and Fluxes over Shelf Systems.
DOI: 10.6084/m9.figshare.22811354
title: Supplementary Material for: Intrauterine Blood Transfusion for Parvo B19 Induced Fetal Anemia: Neuroimaging Findings and Long-Term Neurological Outcomes

description: INTRODUCTION: We aimed to evaluate neuroimaging findings and long-term neurodevelopment of fetuses and children following intrauterine blood transfusion [IUT] for parvo B19 infection induced anemia compared to those with RBC alloimmunization. METHODS: We conducted a retrospective cohort study including women who underwent an IUT due to fetal anemia between 2006 to 2019 in a tertiary, university-affiliated medical center. The cohort was divided into two: a study group - fetuses affected by congenital parvo-B19 infection; and a control group - fetuses affected by RBC alloimmunization. Retrospective data such as antenatal sonographic evaluations, fetal brain MRI results and short-term fetal and neonatal outcomes were collected. All children underwent a neurodevelopmental evaluation after birth using a Vineland questionnaire. Primary outcome was defined as the presence or absence of neurodevelopmental delay. Secondary outcome was defined as the presence of abnormal fetal neuroimaging findings such as cerebellar hypoplasia, polymicrogyria, intracranial hemorrhage or severe ventriculomegaly. RESULTS: Overall, 71 fetuses requiring at least one IUT were included in the study. Of these, 18 were affected by parvo B19 infection and 53 by RBC alloimmunization with various associated antibodies. Fetuses in the parvo B19 group presented at an earlier gestational age [22.91 ± 3.36 weeks vs. 27.37 ± 4.67 weeks, p=0.002] and were more affected by hydrops [93.33% vs. 16.98%, p&lt;0.001]. Three fetuses out of the 18[16.67%] fetuses in the parvo B19 group died in utero following the IUT. Abnormal neuro-imaging findings were detected in 4/15 [26.7%] of the parvo B19 survivors vs. 2/ 53 [3.8%] of fetuses affected by RBC alloimmunization [p=0.005]. There was no difference in long-term neurodevelopmental delay rates between the children in the study and control groups, as assessed at the average age of 3.65 and 6.53 years, accordingly. CONCLUSION: Fetal anemia due to parvo B19, treated with IUT, might be associated with increased rates of abnormal neuro-sonographic findings. The correlation between those findings and long-term adverse neuro-developmental outcomes requires further investigation
DOI: 10.6084/m9.figshare.22811354.v1
title: Supplementary Material for: Intrauterine Blood Transfusion for Parvo B19 Induced Fetal Anemia: Neuroimaging Findings and Long-Term Neurological Outcomes

description: INTRODUCTION: We aimed to evaluate neuroimaging findings and long-term neurodevelopment of fetuses and children following intrauterine blood transfusion [IUT] for parvo B19 infection induced anemia compared to those with RBC alloimmunization. METHODS: We conducted a retrospective cohort study including women who underwent an IUT due to fetal anemia between 2006 to 2019 in a tertiary, university-affiliated medical center. The cohort was divided into two: a study group - fetuses affected by congenital parvo-B19 infection; and a control group - fetuses affected by RBC alloimmunization. Retrospective data such as antenatal sonographic evaluations, fetal brain MRI results and short-term fetal and neonatal outcomes were collected. All children underwent a neurodevelopmental evaluation after birth using a Vineland questionnaire. Primary outcome was defined as the presence or absence of neurodevelopmental delay. Secondary outcome was defined as the presence of abnormal fetal neuroimaging findings such as cerebellar hypoplasia, polymicrogyria, intracranial hemorrhage or severe ventriculomegaly. RESULTS: Overall, 71 fetuses requiring at least one IUT were included in the study. Of these, 18 were affected by parvo B19 infection and 53 by RBC alloimmunization with various associated antibodies. Fetuses in the parvo B19 group presented at an earlier gestational age [22.91 ± 3.36 weeks vs. 27.37 ± 4.67 weeks, p=0.002] and were more affected by hydrops [93.33% vs. 16.98%, p&lt;0.001]. Three fetuses out of the 18[16.67%] fetuses in the parvo B19 group died in utero following the IUT. Abnormal neuro-imaging findings were detected in 4/15 [26.7%] of the parvo B19 survivors vs. 2/ 53 [3.8%] of fetuses affected by RBC alloimmunization [p=0.005]. There was no difference in long-term neurodevelopmental delay rates between the children in the study and control groups, as assessed at the average age of 3.65 and 6.53 years, accordingly. CONCLUSION: Fetal anemia due to parvo B19, treated with IUT, might be associated with increased rates of abnormal neuro-sonographic findings. The correlation between those findings and long-term adverse neuro-developmental outcomes requires further investigation