cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.k1st2b
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005106-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rlyncr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074297-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6q5bc
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pryeria sinica Moore, 1877",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184928-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbh4g4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasGeospatialIssue is false",
 "Country is New Zealand",
 "Modified is 2022-10"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184912-220831081235567/datasets/export for details.
DOI: 10.15468/dl.qqktjc
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005153-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjuvfk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096934-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m892gh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kishidaia albimaculata (Saito, 1934)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184917-220831081235567/datasets/export for details.
DOI: 10.15468/dl.rdiqff
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005119-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nagdvu
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003046-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhwzsu
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aelia J.C.Fabricius, 1803",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 87 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184940-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhvmul
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009173-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3qhau
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087658-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2t9jtc
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dermatoxenus caesicollis (Gyllenhal, 1833)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 192 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184965-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzev4y
title: Occurrence Download

description: A dataset containing 1790483922 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1790483922 records from 32338 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114840-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddtebz
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herdmania pallida",
 "Country is Panama",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010674-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17333773
title: Elevation reverses the effects of forest structure on folivory and leaf asymmetry - data and code

description: These datasets and R scripts are associated with the publication "Elevation reverses the effects of forest structure on folivory and leaf asymmetry". Detailed information regarding data processing and analysis can be found in the Methods section of the publication.
DOI: 10.15468/dl.gcwbsq
title: Occurrence Download

description: A dataset listing the 2484 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "DatasetKey is Paleobiology Database"
 ]
}

 The dataset's 2484 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004552-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29083463
title: Gridded data of embodied carbon from aluminum

description: 5,538,063 records are weight in urban building ECE of aluminum in two urban agglomerations from 2000 to 2020 at 500×500m grid scale.
DOI: 10.34740/kaggle/dsv/11831689
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.29083430
title: Gridded data of embodied carbon from asphalt

description: 5,538,063 records are weight in urban building ECE of asphalt in two urban agglomerations from 2000 to 2020 at 500×500m grid scale.
DOI: 10.15468/dl.bnhgg6
title: Occurrence Download

description: A dataset containing 39019 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pilherodius pileatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 39019 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021175-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wesn8p
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Terminalia catappa",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021177-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awfgn3
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Terminalia catappa",
 "Country is Maldives",
 "HasCoordinate is true"
 ]
}

 The dataset includes 42 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021176-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6rw3d
title: Occurrence Download

description: A dataset containing 3741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pinarochroa sordida)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3741 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021178-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2ypr6
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Terminalia catappa",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021179-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16755071
title: Diverse prokaryotic strategies associated with soil organic matter priming

description: “Data_Figure_1.csv”

This file contains flux data of respiration rates, delta 13C signature, and derived calculations of SOM mineralisation and labile C mineralisation rate. This data was used in Figure 1, Figure A.1, and Table A.6.

 

“Data_Table_2.csv”

This file contains soil pool change data such as total C balance, MBC, ammonium, nitrate, pH, and quantitative PCR. This data was used in Table 2, Table A.7, and Figure A.2.

 

“OTU_Sample.csv”

This file contains the OTU count table at DNA level for both samples per sample. No reads were removed (n0). This file was used in DNA alpha and beta diversity analysis shown in the appendix.

 

“OTU_sample_P1_Grange_n2.csv”

This file contains the OTU count table per sample. Doubletons from the sequencing process were removed (n2). This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“OTU_sample_P1_Moorepark_n2.csv”

This file contains the OTU count table per sample. Doubletons from the sequencing process were removed (n2). This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“OTU_sequence_Grange.csv”

This file contains the OTU’s representative 16S V4 sequence (>97% clustering). Doubletons from the sequencing process were removed (n2). This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“OTU_sequence_Moorepark .csv”

This file contains the OTU’s representative 16S V4 sequence (>97% clustering). Doubletons from the sequencing process were removed (n2). This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“OTU_taxonomy_P1_Grange_n2.csv”

This file contains the OTU’s taxonomic assignment against SILVA. Doubletons from the sequencing process were removed (n2). This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“OTU_taxonomy_P1_Moorepark_n2.csv”

This file contains the OTU’s taxonomic assignment against SILVA. Doubletons from the sequencing process were removed (n2). This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“sample_info.csv”

This file contains the experimental information to sample relation for both samples per sample. This file was used in DNA alpha and beta diversity analysis shown in the appendix.

 

“Sample_info_P1_Grange.csv”

This file contains the experimental information to sample relation. This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.

 

“Sample_info_P1_Moorepark .csv”

This file contains the experimental information to sample relation. This file was used in Figure 2, Table 3 and further DNA and RNA community composition analysis per soil shown in the appendix.
DOI: 10.15468/dl.r69nsf
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Distichodus noboli)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 64 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021181-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxrm47
title: Occurrence Download

description: A dataset containing 368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pinarornis plumosus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 368 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021182-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hkmxd3
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Terminalia catappa",
 "Country is Myanmar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021183-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2v8wb
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Terminalia catappa",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021184-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12693488
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.p78jkk
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinomicrurus macclellandi",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021185-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.622n55
title: Occurrence Download

description: A dataset containing 7910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pionites leucogaster)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 7910 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021186-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efcru2
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Terminalia catappa",
 "Country is Panama",
 "HasCoordinate is true"
 ]
}

 The dataset includes 162 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021188-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13dnt2s
title: Consumer-Grade Side-Scan Sonar Imagery of Invasive Silver Carp in a Missouri River Oxbow Lake, Creve Coeur Lake, 2023 September 20

description: In September 2023, the USGS demonstrated the use of side-scan sonar to image large densities of invasive carp in Creve Coeur Lake, Maryland Heights, Missouri, USA. A 400-meter reach was surveyed using a Humminbird Helix sonar system. Proprietary sonar data were converted to PNG image files (i.e., rectified and speed-corrected) using SonarTRX Pro. The resulting data set includes one CSV file, original side-scan sonar images (PNG files), speed corrected side-scan images (correcting distortions in imagery due to small changes in boat velocity; PNG files), and a KMZ file of original rectified images for a mosaic display in Google Earth Pro.
DOI: 10.5281/zenodo.15090391
title: Code and Data for Policy Tree Optimization

description: This repository contains all the code corresponding to methods and figure generation in the paper below:

Adaptation triggers and indicator interpretability for dynamic reoptimization of reservoir control policies under climate change



Requirements


NumPy, Pandas, Matplotlib, Scipy, Scikit-learn, Seaborn, Numba, multiprocessing, ptreeopt,pickle



Directories


Data: Contains input data for analysis used in the study.

Main_optimization: This folder contains function codes called by Step1_outerloop_reopt_perf.py and supporting function files. This includes the framework for an “outer loop” adaptation policy that establishes indicator thresholds for reoptimization based on recently observed data, and an “inner loop” control policy that undergoes reoptimization according to these thresholds. The inner loop control policies are generated by using the function Step0_Innerloop_Reopt.py. To replicate the results from the experiment, the order is Step0_Innerloop_Reopt.py and then Step1_outerloop_reopt_perf.py. Step 0 takes a significant amount of time to run in serial processing for different windows of observed data.

This directory also contains main_reopt_perf_reevaluate.py, which is used to reevaluate the policies for the training and testing sets, determining the policy actions triggered over time based on feature variables that describe changes in hydrology and demand.

Figures: Directory containing Python scripts to generate Figures 3-8 of the manuscript and data used to plot the figures.

PostProcessing: Directory containing Python scripts on SHAP analysis and sensitivity analysis.



Data preparation and model run




The scenario data can be downloaded here. Unzip and move the folders into data/cmip5 and data/lulc.



The CMIP5 climate scenarios are from USBR and contain daily reservoir inflows in cfs.

The LULC scenarios are from multiple models and have been converted to water demand multipliers as described in Cohen et al. 2021






License: MIT