cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tdmp5y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020886-250914085247600/datasets/export for details.
DOI: 10.15468/dl.3dk46r
title: Occurrence Download

description: A dataset containing 4039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Tajikistan",
 "OccurrenceStatus is Present",
 "Year 2000-2003"
 ]
}

 The dataset includes 4039 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020882-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzg6me
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 46 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020887-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg6hr9
title: Occurrence Download

description: A dataset containing 5703 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Dichanthium annulatum)"
 ]
}

 The dataset includes 5703 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020888-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zn6aq
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Guinea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020889-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zmdyk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Guinea-Bissau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020890-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.muu5gv
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Honduras",
 "HasCoordinate is true"
 ]
}

 The dataset includes 105 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020891-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a463m5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Jamaica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020892-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx9fv8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "Country is Sierra Leone",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020893-250914085247600/datasets/export for details.
DOI: 10.15468/dl.tbqxbw
title: Occurrence Download

description: A dataset containing 66642405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year is 2013"
 ]
}

 The dataset includes 66642405 records from 3946 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020590-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znc5zs
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clidoderma asperrimum (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 302 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004517-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4t6uj
title: Occurrence Download

description: A dataset containing 1008158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Perca fluviatilis Linnaeus, 1758)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1008158 records from 676 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004511-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35vptg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biofokus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004518-250123221155621/datasets/export for details.
DOI: 10.15468/dl.vtc9h2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platessa asperrima Temminck & Schlegel, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004519-250123221155621/datasets/export for details.
DOI: 10.5281/zenodo.14745033
title: GPS velocities in southern Tibet

description: GPS velocities in southern Tibet relative to the Eurasian plate
DOI: 10.5281/zenodo.14745034
title: GPS velocities in southern Tibet

description: GPS velocities in southern Tibet relative to the Eurasian plate
DOI: 10.5281/zenodo.10696653
title: Imputation of missing land carbon sequestration data in the AR6 Scenarios Database

description: This repository is linked to the following research paper:



Prütz, R., Fuss, S., and Rogelj, J.: Imputation of missing land carbon sequestration data in the AR6 Scenarios Database, Earth Syst. Sci. Data, 2025. https://doi.org/10.5194/essd-17-221-2025 


This repository includes: 



An imputation dataset for missing land carbon sequestation data of the AR6 Scenarios Database for global scenarios and R10 scenario variants

Code to test, compare and visualize the performance of regression models to predict missing land removal data

Code to compare and visualize available AR6 land removal data and existing AR6 data reanalyses


The following two datasets are required to replicate the analysis:



Byers, E., Krey, V., Kriegler, E., Riahi, K., Schaeffer, R., Kikstra, J., Lamboll, R., Nicholls, Z., Sandstad, M., Smith, C., van der Wijst, K., Al -Khourdajie, A., Lecocq, F., Portugal-Pereira, J., Saheb, Y., Stromman, A., Winkler, H., Auer, C., Brutschin, E., … van Vuuren, D. (2022). AR6 Scenarios Database [Data set]. In Climate Change 2022: Mitigation of Climate Change (1.1). Intergovernmental Panel on Climate Change. https://doi.org/10.5281/zenodo.7197970

Gidden, M., Gasser, T., Grassi, G., Forsell, N., Janssens, I., Lamb, W. F., Minx, J., Nicholls, Z., Steinhauser, J., & Riahi, K. (2023). Dataset for Gidden et.al. 2023 Updated AR6 Mitigation Benchmarks using National Emissions Inventories (Version v2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10158920


The variable imputation is based on the dataset by Byers et al. (2022). The dataset by Gidden et al. (2023) is used for variable comparison.
DOI: 10.5281/zenodo.13373539
title: Imputation of missing land carbon sequestration data in the AR6 Scenarios Database

description: This repository is linked to the following research paper:



Prütz, R., Fuss, S., and Rogelj, J.: Imputation of missing land carbon sequestration data in the AR6 Scenarios Database, Earth Syst. Sci. Data, 2025. https://doi.org/10.5194/essd-17-221-2025 


This repository includes: 



An imputation dataset for missing land carbon sequestation data of the AR6 Scenarios Database for global scenarios and R10 scenario variants

Code to test, compare and visualize the performance of regression models to predict missing land removal data

Code to compare and visualize available AR6 land removal data and existing AR6 data reanalyses


The following two datasets are required to replicate the analysis:



Byers, E., Krey, V., Kriegler, E., Riahi, K., Schaeffer, R., Kikstra, J., Lamboll, R., Nicholls, Z., Sandstad, M., Smith, C., van der Wijst, K., Al -Khourdajie, A., Lecocq, F., Portugal-Pereira, J., Saheb, Y., Stromman, A., Winkler, H., Auer, C., Brutschin, E., … van Vuuren, D. (2022). AR6 Scenarios Database [Data set]. In Climate Change 2022: Mitigation of Climate Change (1.1). Intergovernmental Panel on Climate Change. https://doi.org/10.5281/zenodo.7197970

Gidden, M., Gasser, T., Grassi, G., Forsell, N., Janssens, I., Lamb, W. F., Minx, J., Nicholls, Z., Steinhauser, J., & Riahi, K. (2023). Dataset for Gidden et.al. 2023 Updated AR6 Mitigation Benchmarks using National Emissions Inventories (Version v2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10158920


The variable imputation is based on the dataset by Byers et al. (2022). The dataset by Gidden et al. (2023) is used for variable comparison.
DOI: 10.5281/zenodo.14422018
title: Spatial Transcriptomics Reveals Human Cortical Layer and Area Specification

description: The human cerebral cortex, pivotal for advanced cognitive functions, is composed of six distinct layers and dozens of functionally specialized areas. These layers and areas are distinguished both molecularly, by diverse neuronal and glial cell subtypes, and structurally, through intricate spatial organization. While single-cell transcriptomics studies have advanced molecular characterization of human cortical development, a critical gap exists due to the loss of spatial context during cell dissociation. Here, we utilized multiplexed error-robust fluorescence in situ hybridization (MERFISH), augmented with deep-learning-based nucleus segmentation, to examine the molecular, cellular, and cytoarchitectural development of human fetal cortex with spatially resolved single-cell resolution. Our extensive spatial atlas, encompassing over 18 million single cells, spans eight cortical areas across four time points in the second and third trimesters. We uncovered an early establishment of the six-layer structure, identifiable by the laminar distribution of excitatory neuron subtypes, three months before the emergence of cytoarchitectural layers. Notably, we discovered two distinct modes of cortical areal specification in the mid-gestation: (1) a continuous, gradual transition observed across most cortical areas along the anterior-posterior axis, and (2) a discrete, abrupt boundary uniquely identified between the primary (V1) and secondary (V2) visual cortices as early as gestational week 20. This sharp binary transition in V1-V2 neuronal subtypes challenges the notion that continuous morphogen gradients dictate mid-gestation cortical arealization. Furthermore, integrating single-nucleus RNA-sequencing with MERFISH revealed an early upregulation of synaptogenesis in V1-specific Layer 4 neurons, implicating a role of synaptogenesis in this discrete border formation. Collectively, our findings underscore the crucial role of spatial relationships in determining the molecular specification of cortical layers and areas. This study provides a valuable resource for the field and establishes a spatially resolved single-cell analysis paradigm, paving the way for a comprehensive developmental atlas of the human brain.
DOI: 10.5281/zenodo.14422017
title: Spatial Transcriptomics Reveals Human Cortical Layer and Area Specification

description: The human cerebral cortex, pivotal for advanced cognitive functions, is composed of six distinct layers and dozens of functionally specialized areas. These layers and areas are distinguished both molecularly, by diverse neuronal and glial cell subtypes, and structurally, through intricate spatial organization. While single-cell transcriptomics studies have advanced molecular characterization of human cortical development, a critical gap exists due to the loss of spatial context during cell dissociation. Here, we utilized multiplexed error-robust fluorescence in situ hybridization (MERFISH), augmented with deep-learning-based nucleus segmentation, to examine the molecular, cellular, and cytoarchitectural development of human fetal cortex with spatially resolved single-cell resolution. Our extensive spatial atlas, encompassing over 18 million single cells, spans eight cortical areas across four time points in the second and third trimesters. We uncovered an early establishment of the six-layer structure, identifiable by the laminar distribution of excitatory neuron subtypes, three months before the emergence of cytoarchitectural layers. Notably, we discovered two distinct modes of cortical areal specification in the mid-gestation: (1) a continuous, gradual transition observed across most cortical areas along the anterior-posterior axis, and (2) a discrete, abrupt boundary uniquely identified between the primary (V1) and secondary (V2) visual cortices as early as gestational week 20. This sharp binary transition in V1-V2 neuronal subtypes challenges the notion that continuous morphogen gradients dictate mid-gestation cortical arealization. Furthermore, integrating single-nucleus RNA-sequencing with MERFISH revealed an early upregulation of synaptogenesis in V1-specific Layer 4 neurons, implicating a role of synaptogenesis in this discrete border formation. Collectively, our findings underscore the crucial role of spatial relationships in determining the molecular specification of cortical layers and areas. This study provides a valuable resource for the field and establishes a spatially resolved single-cell analysis paradigm, paving the way for a comprehensive developmental atlas of the human brain.
DOI: 10.5281/zenodo.13730030
title: Data repository accompanying "A flux-controlled two-site Kitaev chain"

description: This folder contains the raw data and code used to generate the plots for the paper A flux-controlled two-site Kitaev chain.

The manuscript can be found on Arxiv.
DOI: 10.5281/zenodo.13730031
title: Data repository accompanying "A flux-controlled two-site Kitaev chain"

description: This folder contains the raw data and code used to generate the plots for the paper A flux-controlled two-site Kitaev chain.

The manuscript can be found on Arxiv.
DOI: 10.5281/zenodo.14745132
title: Gallic and ferulic acid effects on L929 fibroblast, Caco2 and U937 cell proliferation and viability.
DOI: 10.5281/zenodo.14745133
title: Gallic and ferulic acid effects on L929 fibroblast, Caco2 and U937 cell proliferation and viability.
DOI: 10.15468/dl.af5ua3
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyporhamphus sajori (Temminck & Schlegel, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 288 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004520-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8k62b7
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemiramphus sajori Temminck & Schlegel, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004521-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/kpvgtm6hh6.1
title: Multi-Level Association Rule Mining and Network Pharmacology to Identify the Polypharmacological Effects of Herbal Materials and Compounds from Traditional Medicine

description: An integrated analysis using association rule mining and network pharmacology to identify therapeutic combinations of herbal materials and compounds in traditional medicine.

Traditional medicine (TM) has been used to treat a variety of symptoms and diseases through the combination of herbal materials, and it also contributes to the pharmaceutical industry with several advantages such as fewer side effects and significant cost reductions. However, the rules for combining ingredients are not well organized, and complex multi-compound characteristics make it difficult to understand the pharmacological mechanisms among the herbal materials used in TM. In silico approaches that have been proposed to analyze TM and herbal materials require large amount of high-quality structural information or physicochemical properties or have limitations due to ease of interpretation or scope of analysis.

In this work, we proposed an approach named InPETM, that integrates association rule mining (ARM) and network pharmacology analyses to identify polypharamcological effects of herbal materials and compounds from TM. Specifically, InPETM performs analyses combining ARM and network pharmacology-based method at the herb-level and compound-level, respectively, and identifies potential herbal material combination and compound candidates for the phenotype. InPETM provided results of pharmacological effects of herbal material combination and compound and identification of mechanism of action in human protein interactome network, which were confirmed by further structural network analysis and literature review analysis. These results indicate that InPETM can contribute to drug development in TM through better understanding of polypharmacological features of herbal materials.
DOI: 10.15468/dl.9p6vg4
title: Occurrence Download

description: A dataset containing 305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachysalambria curvirostris (Stimpson, 1860)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 305 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004524-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6vw5f
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.29249 57.39915,34.3487 52.28922,37.47144 50.49128,39.74252 49.35574,39.93178 45.19209,45.51486 45.85449,50.15165 45.94911,59.14135 53.14087,56.3025 64.30703,32.26688 61.46818,28.29249 61.46818,28.29249 57.39915))",
 "TaxonKey is Pulsatilla pratensis (L.) Mill."
 ]
}

 The dataset includes 407 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004525-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84c55p
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachypenaeus curvirostris (Stimpson, 1860)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004528-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nceatd
title: Occurrence Download

description: A dataset containing 9456 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Verbascum chaixii Vill."
 ]
}

 The dataset includes 9456 records from 259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004529-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr2qqe
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomberomorus niphonius (Cuvier, 1832)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 157 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004530-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4f52s9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cybium niphonium Cuvier, 1832",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004532-250123221155621/datasets/export for details.