cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12151785.v1
title: Efficacy and safety of tocilizumab in treatment of Takayasu arteritis: A systematic review of randomized controlled trials

description: Takayasu arteritis (TAK) is a chronic immune vasculitis in which Interleukin-6 (IL-6) receptors play a key role in pathogenesis. Tocilizumab (TCZ), an IL-6 receptor antagonist with a favorable safety and efficacy profile, has been tried as an option for patients with TAK. This systematic review analyzed the evidence from randomized control trials (RCT) assessing the safety and efficacy of TCZ in patients with TAK.
DOI: 10.6084/m9.figshare.20455099.v1
title: Urban Infrastructure Requalification Index: the central viaduct in Brasília

description: Abstract Memories and pride of the past related to cultural places, often provided by the urban infrastructure itself, are resources for urban development and regional identity, which can be recreated, interpreted and re-functionalized to suit current and future generations. This work uses an urban retrofit intervention model in the central area of Brasília, represented by the Galeria dos Estados viaduct, the capital's main arterial road. The methodology adopted for the classification of urban infrastructure according to the Urban Infrastructure Requalification Index (IRU) considers a multi-criteria model based on three parameters: structural, environmental and spatial. The data point to the feasibility of implementing these parameters in the assessment of existing infrastructure, connectors of contemporary cities.
DOI: 10.6084/m9.figshare.19690843.v1
title: Berghia stephanieae de novo transcriptome

description: In this sudy we analyzed the genetic expression profile of <em>Berghia</em> <em>stephanieae</em>, which is able to incorporate <em>Breviolum minutum</em> from its cnidarian prey <em>Exaiptasia diaphana</em>, but is not able to maintain the algae for more than a couple of days during starvation. Here we present the data that supports this investigation.
DOI: 10.6084/m9.figshare.28579814.v1
title: Datasets for supercritical CO<sub>2</sub>-water-BS research files

description: Datasets for the supercritical CO<sub>2</sub>-water-BS research are available in the these in-excel data.
DOI: 10.6084/m9.figshare.25117196.v1
title: Amphibian Species traits and occurrence database in Turkey

description: Amphibian Species traits and occurrence database in Turkey
DOI: 10.6084/m9.figshare.28654079.v1
title: Data from "How Light Environment Affects the Physiology and Morphology of Native and Invasive Understory Flora"

description: During October 2022, Callicarpa americana L. (Lamiaceae) and Ardisia crenata Sims (Primulaceae) were sampled in the University of Florida Natural Area Teaching Laboratory (NATL; https://natl.ifas.ufl.edu/). Plants were selected in pairs (one of each species) in high- and and low-light environments (4 paired replicates per light environment). Photosynthetic light response curves were measured using a Li-6800 (Li-Cor Inc., Lincoln, NE) on fully sun-exposed leaves. Leaf functional traits were measured on the light-response curve leaves, and then plants were destructively sampled to measure plant biomass fractions (leaf, root and stem biomass fractions), leaf functional traits (on a sample of 5 healthy leaves taken from the plant). Those data are archived here.
DOI: 10.6084/m9.figshare.23969526.v1
title: Phylogeny and alignment of chytrid single cells and PacBio data from Seto et al. 2023.

description: Phylogenetic information for Seto et al primary phylogeny of single cells of chytrids fungi. Data supporting:Seto, K., D. R. Simmons, C. A. Quandt, T. Frenken, A. C. Dirks, R. A. Clemons, K. M. McKindles, R. M. L. McKay, and T. Y. James. (2023). A combined microscopy and single-cell sequencing approach reveals the ecology, morphology, and phylogeny of uncultured lineages of zoosporic fungi. <i>mBio, </i>DOI: https://doi.org/10.1128/mbio.01313-2318S-5.8S-28S_alignment.fst=18S-5.8S-28S concatenated alignment in fasta format18S-5.8S-28S_partition.nex= a partition file defining locations of genes in concatenated file18S-5.8S-28S_tree.nwk=the resulting phylogeny in newick format.18S_PacBio_alignment.fasta= 18S sequences of PacBio environmental data plus reference sequences.18S_PacBio.nwk=resulting tree from PacBio dataset.
DOI: 10.6084/m9.figshare.21908493.v1
title: The role of lung ultrasonography in the assessment of overhydration in maintenance hemodialysis patients

description: Existed methods like biochemical markers improve the accuracy of fluid evaluation for the maintenance hemodialysis patients, but none of them has become the gold standard. This study aimed to evaluate the potential of lung ultrasonography as a useful tool for monitoring the volume status of the patients. A total of 88 patients undergoing maintenance hemodialytic were enrolled in this prospective observational study. Patients were divided into three groups: overhydration (OH), normohydration, and hypohydration according to bioimpedance spectroscopy. Lung ultrasonography parameters, echocardiography parameters, and clinical characteristics of three groups were analyzed. After an average follow-up of 433 days, all-cause mortality among groups was compared. The total number of lung comets was statistically reduced in patients after dialysis (<i>Z</i>= −6.891, <i>p</i> &lt; 0.001). This reduction was related to ΔOH (OH – Δ<i>W</i> (the weight gain from dry weight)) and echocardiographic parameters, which proved the relationship among the comet-tail, hydration status of body and cardiac performance. The Kappa consistency test showed that lung ultrasonography and bioelectrical spectroscopy had moderate consistency. ROC analysis showed that the best cut-point of lung comet is 13. The pre-/post-dialysis lung comet-tail, cardiac function and total body impedance with all-cause mortality was investigated. Kaplan–Meier’s analysis revealed that the all-cause mortality was higher in lung congestion patients. This study proposes a potentially reliable lung ultrasonography method for estimating fluids overload, which also has implication value of all-cause mortality.
DOI: 10.6084/m9.figshare.25013849.v2
title: Raw Data .zip

description: This is a custom audio dataset，which comes from the downloaded databases of "Dingxiang Doctor" platform(https://dxy.com) and "Chunyu Doctor" platform(https://www.chunyuyisheng.com)
DOI: 10.6084/m9.figshare.4815046.v4
title: iCub Facility - Ubuntu (x64) VVV VM

description: This is an Ubuntu 16.04 x64 Virtual Machine (<b>OVF format</b>) pre-configured with iCub software.<br>This VM has been prepared for the use during <b>VVV18 Winter School</b> following the instructions published here: https://github.com/vvv-school/vvv18/wiki/How-to-prepare-your-system.<br>The VM is archived within three files to comply with size limitations. Use your preferred tool to unpack the VM at once.<br><br>VM credentials are:- login: <b>icub</b>- password: <b>icub</b>
DOI: 10.6084/m9.figshare.27143793.v1
title: Additional file 6 - dataset and scripts for correlations beween microbiota and metabolome

description: Correlation analyses between microbiota and metabolome data were conducted using Python. Only metabolites within the quantification range for each sample and bacterial genera with an average abundance above 0.05% were included in the analyses. The Shapiro-Wilk test was used to assess the normality of the metabolite and bacterial genera distributions. For pairs where both variables followed a normal distribution, Pearson's correlation coefficient was employed. Otherwise, Spearman's correlation was used. To account for the risk of false positives associated with multiple comparisons, the Benjamini-Hochberg correction was applied. A global analysis was first performed across all samples, considering all metabolites and bacterial genera, followed by a targeted analysis focusing on the metabolites and bacterial genera that showed significant differences between IUGR and NORM pigs.
DOI: 10.6084/m9.figshare.3842937.v1
title: Measuring the abundance of species in grassland compared to the percentage of grass at York University Grassland area

description: Meta data: Quadrats - A 1 square meter quadrat was used randomly to record plant species in the grassland Number of species - Categorical variable; the number of different plant species in the quadrats Total number of species - Categorical variable; the total number of plant species in the quadrats Grass percentage: an estimated percentage of grass coverage over plants in the quadrats Plants percentage: an estimated percentage of plants coverage over plants in the quadrats <br> Hypothesis: There is a correlation between growing plants in grasslands and the percentage of grass decreasing due to the occupancy of the percentage of plants species and their growing habitat <br> Prediction: The percentage of grass decreases as the percentage of plants species increases The more species, the more the plants will thrive in the grassland As plants increase in number, the percentage of plants coverage increases <br> Method: At the grassland location at York University, quadrats of 1 square meter were randomly placed in a grassland at to observe and record plant species and their correlation to grass percentage around. The plant species in the quadrats were observed and recorded to identifying their species. The plant percentage was observed and recorded compared to the grass percentage in the quadrats. he experiment was repeated 25 times each at different location to make sure of randomization and to have a non bias data.
DOI: 10.6084/m9.figshare.26376391.v1
title: Investigating the Role of Cultural Values in Adopting Large Language Models for Software Engineering — Online Appendix

description: As a socio-technical activity, software development involves the close interconnection of people and technology. The integration of Large Language Models (LLMs) into this process exemplifies the socio-technical nature of software development. Although LLMs are influencing the development process, software development remains fundamentally human-centric. Thus, it is crucial to investigate the human factors that characterize this adoption process. This study explores the factors influencing the adoption of LLMs in software development, focusing on the role of professionals' cultural values. Guided by the Unified Theory of Acceptance and Use of Technology (UTAUT2) and Hofstede's cultural dimensions, we hypothesized that cultural values moderate the relationships within the UTAUT2 framework. Using Partial Least Squares-Structural Equation Modelling (PLS-SEM) and data from 188 software engineers, we found that habit and performance expectancy are the primary drivers of LLM adoption, while cultural values do not significantly moderate this process. These findings suggest that the perceived contribution that LLMs can give to the working activity overshadow cultural influences, providing actionable insights for organizations and contributing to the broader understanding of socio-technical adoption processes.<br><br>This is the online replication package of the paper.
DOI: 10.6084/m9.figshare.13341215.v2
title: Supplemental Tables S1-S9

description: Supplementary Tables S1-S9 of "Comparison of Survival of Preterm Newborn Rabbits at 25-28 Days of Gestation with Perinatal Therapies at Birth Transition"
DOI: 10.6084/m9.figshare.28349138.v1
title: Supplementary tables of VOCs.

description: Table 1 is the raw VOC data of C. revoluta.Table 2 is the raw VOC data of P. odorifer
DOI: 10.6084/m9.figshare.9337169.v2
title: Flat periwinkles SNPs before filtering (reference fSAM)

description: Raw vcf file (zipped) containing SNPs for flat periwinkles after mapping the reads against the transcriptome reference for Littorina fabalis (fSAM)<br>
DOI: 10.6084/m9.figshare.c.3931579_d6.v1
title: Additional file 15: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: A_J_EPIC. (XLS 1819 kb)
DOI: 10.6084/m9.figshare.22559677.v1
title: Elemental mapping data of the hydrothermal ferromanganese oxides obtained from a petit-spot volcano

description: The dataset consists of elemental mapping data of hydrothermal ferromanganese oxides (D05-20 and D05-21) obtained from a petit-spot volcano in the western North Pacific Ocean. The elemental mapping of Al, Ca, Cu, Fe, K, Mg, Mn, Ni, Rb, S, Si, and Zn was performed on polished cross sections of the samples using micro-XRF (XGT7000V, Horiba, Kyoto, Japan) with energy-dispersive X-ray spectroscopy at Kyoto University. The analysis was repeated 15 times at a tube voltage of 50 kV, a tube current of 0.9 A, and an X-ray beam diameter of 100 µm. Scanning was performed in ~75 µm intervals (pixel size) at a rate of 9 ms/pixel. The intensity was determined as the cumulative intensity of the 15 analyses (total analysis time = 135 ms/pixel).
DOI: 10.6084/m9.figshare.20011360.v1
title: Sediments and nutrients input to a small reservoir in the tropical semi-arid region

description: ABSTRACT The sediment and nutrients that are input to surface reservoirs compromise the quality and quantity of the stored water. The aim of this study was to investigate the dynamics of sediment and nutrient input along the drainage basin of a small reservoir in the semi-arid region. The reservoir under study was built in 1956 and has a storage capacity of 5.01 hm3. Seven trenches were dug along the drainage basin of the reservoir following the river. Sediment samples were collected at increasing depths of 20 cm until reaching the original riverbed. An analysis of particle size, total organic carbon (TOC), total nitrogen (TN), available phosphorus (P), exchangeable aluminium (Al), total iron (TFe) and pH was carried out. Approximately 60% of the sediment in the reservoir is composed of clay and silt, and 40% of sand. The greatest thickness of the sediment layer, as well as the greatest concentration of fine sediment, was registered in the section nearest to the dam. The values for TOC (2.47 &lt; TOC &lt; 34.47 g kg-1) and TN (0.69
DOI: 10.6084/m9.figshare.20235879.v1
title: Gray_Greenstudy raw data

description: Raw data from toxicological exposure assays investigating the toxicity of ecofriendly and consumer products before and after degradation to two sensitive aquatic organisms.
DOI: 10.6084/m9.figshare.24988671.v1
title: data set.docx

description: 基于跨境电商双渠道供应链视角，考虑进口关税、运输异质性和出口退税的影响，通过比较分散和集中决策的绩效差异，分析进口关税、出口退税和运输异质性对跨境电商双渠道定价、需求和利润的影响<br><br>
DOI: 10.6084/m9.figshare.7127057.v1
title: Supplementary Material for: The Incidence Prognosis and Risk Factors of Cognitive Impairment in Maintenance Haemodialysis Patients

description: <b><i>Objective:</i></b> To investigate the incidence and the prognosis of cognitive impairment (CI) and to find out the risk factors associated with the outcome in maintenance haemodialysis (MHD) patients. <b><i>Methods:</i></b> Enrolled the patients who met the criteria as below: MHD (≥3 months) patients before July 2014, ≥18 years old and could carry on the cognitive function test (Montreal Cognitive Assessment [MoCA]). All enrolled patients were divided into 2 groups: CI group (MoCA &lt; 26) and non-CI group (MoCA ≥26). All patients were followed up for 36 months. The incidence, demography data, medical history, haemodialysis data, laboratory examination and prognosis of CI in haemodialysis patients were prospectively compared and analyzed. Multivariate logistic regression analysis was used to investigate the risk factors of CI. Kaplan-Meier survival curve was used for survival analysis. <b><i>Results:</i></b> In the present study, 219 patients were enrolled. The ratio of male to female was 1.46: 1. Age was 60.07 ± 12.44 and dialysis vintage was 100.79 ± 70.23 months. One hundred thirteen patients’ MoCA scores were lower than 26 were divided into CI group. Education status (OR 3.428), post-dialysis diastolic pressure (OR 2.234) and spKt/V (OR 1.982) were independent risk factors for CI in MHD patients. During the follow-up period, 15 patients died (13.2%) in the CI group and 5 died (4.72%) in the non-CI group (<i>p</i> &lt; 0.05). The Kaplan-Meier survival curve analysis showed that the survival rate of patients with CI was lower than that of non-CI group in MHD patients during 3 years follow-up (<i>p</i> = 0.046). <b><i>Conclusion:</i></b> CI is one of the most common complications in MHD patients. The mortality is high in patients who had CI. Education status, post-dialysis diastolic pressure and spKt/V are independent risk factors for CI in MHD patients.
DOI: 10.6084/m9.figshare.24171774.v3
title: The chromosomal-level genome of <i>Oryzias sinensis </i>reveals chromosome fusion among ricefish

description: zhonghuaqingjiang.chr.fasta: The chromosome assembly file of Oryzias sinensis.<i>Oryzias</i>_<i>sinensis</i>_atac_raw_1.fq and <i>Oryzias</i>_<i>sinensis</i>_atac_raw_2.fq are raw data from ATAC sequencing.
DOI: 10.6084/m9.figshare.24425407.v2
title: Butoh Impedance Before and After- 02-08-2023

description: Impedance data collected before and after the rehearsal on 02-08-2023
DOI: 10.6084/m9.figshare.23875509.v1
title: Code and data for carrying capacity calibration

description: The supplemental content belongs to a study on the carrying capacity of bats in Africa, that is described in details in the paper:Mursel, S., Conus, D., Huang, W., Buceta, J., & Bocchini, P. (2022, June 3). Random field calibration for the bare carrying capacity of bats in Africa. https://doi.org/10.31219/osf.io/b8nx4The content is organized into three folders. The "Mean K0" folder focuses on the calibration of bat carrying capacity taking into account environmental variables that are averaged over a ten-year period. Five environmental parameters for all of Africa are available in csv format, and two Matlab code packages utilise these csv files. The "Monthly K0" folder deals with determining the carrying capacity of bats by integrating environmental factors specific to particular months of the year. R code files are available under "R code for statistics and building regression" for estimating statistics and building regression models.
DOI: 10.6084/m9.figshare.21325086.v1
title: Supplementary Material for: Effects of Helicobacter pylori therapy on gut microbiota: a systematic review and meta-analysis

description: Background: Although indications for evaluation and treatment of Helicobacter pylori (H. pylori) infection are broadening to include primary prevention for gastric adenocarcinoma, potential adverse effects on gut microbiota have been raised. We performed a systematic review and meta-analysis to evaluate the effects of H. pylori therapy on gut microbiota. Methods: PubMed, EMBASE, Cochrane Library and Web of Science (to 4/2021) were searched for studies quantitatively evaluating microbiota before and after H. pylori therapy. Meta-analysis was performed to assess early (&lt;1 year) and long-term (≥1 year) effects on gut microbiota after H. pylori treatment. Subgroup analysis evaluating the effects of H. pylori therapy with addition of probiotics on gut microbiota was also performed. Results: Thirty studies (N=1,218) met the criteria. Early after H. pylori therapy, intestinal microbial diversity was reduced in nearly all studies. At the genus level, reduction in the abundance of Enterococcus, while increase in Lactobacillus, Bifidobacterium, and Bacteroides counts were observed. However, Lactobacillus, Bifidobacterium, Bacteroides, and Enterococcus counts remained stable in patients who received probiotics with H. pylori therapy. At the phylum level, the relative abundance of Actinobacteria and Firmicutes increased after treatment. At ≥1 year, intestinal microbial diversity normalized in six of seven studies. No differences in the relative abundance of Actinobacteria, Firmicute, Bacteroidetes, and Proteobacteria were observed ≥1 year after therapy. Conclusion: The impact of H. pylori therapy on gut microbiota appears transient with early changes largely resolving after one year. Probiotics may reduce the early impact of H. pylori therapy on gut microbiota.
DOI: 10.6084/m9.figshare.12280313.v1
title: Genomic annotations of Vazella pourtalesii symbionts

description: Interproscan annotations (interpro version 5.30-69.0) of microbial genomes assembled from metagenomic data of the glass sponge <i>Vazella pourtalesii</i> and surrounding seawater. <br>
DOI: 10.6084/m9.figshare.7165505.v1
title: Time-frequency PNG images of simulated glitches in Gravitational-wave interferometers

description: This dataset contains time-frequency spectrograms of simulated glitches, used in the Razzano & Cuoco 2018 paper (Classical and Quantum Gravity, 25, 9, see reference below). The dataset is divided in 3 subdirectories (train, test, val) for the training, testing and validation purposes.Under each directory there is a subdirectory for each class, that contains the images in PNG format. Due to copyright issues, the glitches with the following index are missing (the relative images have been published), but can be retrieved from the original paper<br>024002510339061903430651<br>The dataset also contains the summary files in CSV format of the simulated glitches of the train,val and test directories<br>
DOI: 10.6084/m9.figshare.16649386.v1
title: Data from: Effects of landscape configuration on the occurrence and abundance of an arboreal marsupial from the Valdivian rainforest

description: Original data from: Fernández, V.P., G.B. Rodríguez-Gómez, D.A. Molina-Marin, G.J. Castaño-Villa & F.E. Fontúrbel. 2022. Effects of landscape configuration on the occurrence and abundance of the arboreal marsupial of the Valdivian rainforest. Revista Chilena de Historia Natural, https://doi.org/10.1186/s40693-022-00107-9<br>This repository contains the original data (as a csv file) and a RMarkdown file with the code used to generate the Bayesian models.
DOI: 10.6084/m9.figshare.19375934.v1
title: Neo Broker

description: This dataset belongs to the respective research article.<br>
DOI: 10.6084/m9.figshare.19397852.v2
title: Mascot Generic Files of mamba venom

description: Mascot Generic Files of Dendroaspis angusticeps and Dendroaspis polylepis, nanofractionated venom.
DOI: 10.6084/m9.figshare.28152686.v3
title: Transcriptomic changes induced by naringenin treatment in MCF-7 breast cancer cells

description: Supplementary Data 1: Genes differentially expressed in MCF-7 cells treated with naringenin compared to vehicle control - differences in gene expression values were determined by DEseq2 algorithms and provided as log2(fold change) valuesSupplementary Data 2: Signaling pathways altered by naringenin treatment, using Enrichr Pathways and the MSigDB Hallmark gene set
DOI: 10.6084/m9.figshare.1136081_d281
title: Ex14R58 vGluT2-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.15468/dl.g69w6v
title: Occurrence Download

description: A dataset containing 1629 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Noteridae, Hydraenidae, Hygrobiidae, Dytiscidae, Hydrophilidae, Naucoridae, Notonectidae, Gerridae, Gyrinidae, Psephenidae, Nepidae, Veliidae, Pleidae, Micronectidae, Belostomatidae, Corixidae, Mesoveliidae)",
 "Country is one of (Nigeria)"
 ]
}

 The dataset includes 1629 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009486-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.