cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6342104
title: MD simulation of POPC bilayer with CHARMM36 force field, 100 mM NaCl

description: MD simulation of POPC bilayer with CHARMM36 force field, 100 mM NaCl Dataset contains simulation files including centered and equilibrated trajectory Nacl100-25-500ns.xtc. System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: NaCl Concentration: 100 mM Number of cations: 16 Simulation time: 500 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.5281/zenodo.6342175
title: MD simulation of POPC bilayer with CHARMM36 force field, 200 mM NaCl

description: MD simulation of POPC bilayer with CHARMM36 force field, 200 mM NaCl Dataset contains simulation files including centered and equilibrated trajectory Nacl200mM-45-500ns.xtc. System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: NaCl Concentration: 200 mM Number of cations: 32 Simulation time: 500 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.5281/zenodo.6342652
title: MD simulation of POPC bilayer with CHARMM36 force field, 1000 mM NaCl

description: MD simulation of POPC bilayer with CHARMM36 force field, 1000 mM NaCl Dataset contains simulation files including centered and equilibrated trajectory Nacl1000mM-15-500ns.xtc. System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: NaCl Concentration: 1000 mM Number of cations: 160 Simulation time: 500 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.6073/pasta/85e08a1ea6548ac2eaf808a70ce3eeb2
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes

description: These data describe the species abundance and size distributions of fishes surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. The abundances of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a five by fifty meter transect which extends from the bottom to the surface of the water column are recorded by a diver using SCUBA. The diver then swims back along a one by fifty meter section of the original transect line and records the abundances of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids etc). Surveys are conducted between 0900 and 1600 hours (Moorea time) during late July or early August each year. In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm. Four replicate transects are surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides) and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless steel posts affixed to the reef. Transects on the forereef are located at a depth of approximately 12m, those on the backreef are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. In addition to the biotic data collected, divers also record data on the date and time each transect was surveyed, wind speed and sea state, swell height in m, amount of cloud cover in % and horizontal visability in m. This monitoring program is consistent with the protocols adopted by the Global Coral Reef Monitoring Network and the Australian Institute of Marine Science for use with the Great Barrier Reef Long-term Monitoring Program.
DOI: 10.6084/m9.figshare.20746564
title: Supplementary Material for: Surgical Repair of the Extrusion of the Body of a PAUL Implant for Glaucoma

description: The purpose of our article was to describe a simple but effective surgical technique performed on a patient with an extrusion of part of the body of a PAUL drainage implant for glaucoma. We present the case of a patient with refractory glaucoma and a history of multiple ocular interventions. A PAUL shunt was implanted and in the early postoperative period the patient presented extrusion of part of the implant body. An excessive scarring tissue at the lateral rectus muscle tendon hampered the placement of the lateral wing under the muscle; therefore, we decided to trim a part of it and suture the implant body to the sclera. The surgical technique that satisfactorily resolved the complication is described and shown in a video. This is the first time that such complication is described with the PAUL implant. We suggest that the intrinsic characteristics of the implant, mainly the dimensions, material, and thickness, made it possible for a potentially serious complication such as that described to be solved in a relatively simple and nontraumatic way for the eye.
DOI: 10.5281/zenodo.4670295
title: Parameters and model results for sensitivity and uncertainty analysis of LPJ-GUESS

description: This are the parameters and the model run results from LPJ-GUESS to perfrom a sensitivity and uncertainty analysis
DOI: 10.5281/zenodo.6619202
title: MD simulation of POPC bilayer with OPLS3e force field, 1000 mM CaCl2 part 2

description: MD simulation of POPC bilayer with OPLS3e force field, 1000 mM CaCl<sub>2</sub> part 2 Dataset contains trajectories (_trj) for the last 500ns of the 1000ns trajectory, topology (-out.cms), and other files. For the ease of the upload, trajectory files (_trj) are divided to 100ns pieces and tarred (named desmond_md_cacl1000_x-xns.tar.gz) Dataset also contains Gromacs converted trajectories for the last 500 ns of 1000 ns, and are as 100 ns pieces for analysis since simulation did not equilibrate during 1000 ns. System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: CaCl<sub>2</sub> Concentration: 1000 mM Number of cations: 160 Simulation time: 1000 ns (in this dataset 500-1000ns) Simulation engine: Desmond 2019-4 Temperature: 300 K Related dataset: MD simulation of POPC bilayer with OPLS3e force field, 1000 mM CaCl<sub>2</sub> part 1
DOI: 10.6084/m9.figshare.1577576
title: Accuracy of order parameter measurements

description: Snapshot of blog post from nmrlipids.blogspot.fi done for citing purposes. See link below for archived webpage.
DOI: 10.6084/m9.figshare.19747726.v1
title: Data on Monolistra pavani resistance to droughts

description: Data on tests performed directly in the field on theresistance to droughts in the isopod <em>Monolistra pavani</em>
DOI: 10.17632/jn2t9gw3vt.1
title: An Evaluation of the Three Measurable Cardinal Areas of the National Youth Service Corps Programme: A Survey Dataset

description: This data contains information from an evaluation of the three measurable cardinal objectives of the National Youth Service Corps (NYSC). The three cardinal objectives include orientation course, primary assignment and community service. The NYSC is a one-year mandatory national service for all Nigerian graduates from  Nigerian universities and elsewhere. The survey was conducted to find out corps members experiences with different aspects of the programme and include the opinions of graduates that served in the last decade 2012 to 2021.
DOI: 10.21227/a6c1-6c21
title: Optimal protocol Key generating rates for 3 QKD-protocol under different scenarios

description: AbstractQuantum key distribution (QKD) provides us with an unprecedentedly secure way of communication, and the future of QKD protocols is therefore extremely promising. This dataset concerns the key generating rates of 3 well-known protocols under different scenarios. These protocols are BB84, Measurement device independent QKD (MDI-QKD) and Twin-Field QKD (TF-QKD). What compose a specific scenario are 5 features: dark count rate (Y0), misalignment error rate (ed), efficiency of single photon detectors (η), numbers of pulses (N), and transmission distance (L). It also features a pair of training and testing set which we use to train a machine learning model to determine which protocol is the optimal one for a specific scenario.
DOI: 10.5281/zenodo.6341899
title: MD simulation of POPC bilayer with CHARMM36 force field, 50 mM CaCl2

description: MD simulation of POPC bilayer with CHARMM36 force field, 50 mM CaCl<sub>2</sub> Dataset contains simulation files including centered trajectory files. For the ease of the upload, trajectory files (.xtc) are divided to 100ns pieces (Cacl_x-xns.xtc) System: POPC bilayer in water Number of lipids: 200 (100/leaflet) Number of waters: 8880 Salt: CaCl<sub>2</sub> Concentration: 50 mM Number of cations: 8 Simulation time: 1000 ns Simulation engine: GROMACS 2019.5 Temperature: 300 K
DOI: 10.17188/1206949
title: Materials Data on Y2SiO5 by Materials Project

description: Y2SiO5 crystallizes in the monoclinic C2/c space group. The structure is three-dimensional. there are two inequivalent Y3+ sites. In the first Y3+ site, Y3+ is bonded in a 7-coordinate geometry to seven O2- atoms. There are a spread of Y–O bond distances ranging from 2.22–2.70 Å. In the second Y3+ site, Y3+ is bonded to six O2- atoms to form distorted YO6 octahedra that share corners with four equivalent SiO4 tetrahedra and edges with two equivalent YO6 octahedra. There are a spread of Y–O bond distances ranging from 2.23–2.32 Å. Si4+ is bonded to four O2- atoms to form SiO4 tetrahedra that share corners with four equivalent YO6 octahedra. The corner-sharing octahedra tilt angles range from 43–66°. There are a spread of Si–O bond distances ranging from 1.63–1.66 Å. There are five inequivalent O2- sites. In the first O2- site, O2- is bonded in a 3-coordinate geometry to two Y3+ and one Si4+ atom. In the second O2- site, O2- is bonded in a 1-coordinate geometry to three Y3+ and one Si4+ atom. In the third O2- site, O2- is bonded in a 1-coordinate geometry to two equivalent Y3+ and one Si4+ atom. In the fourth O2- site, O2- is bonded to four Y3+ atoms to form edge-sharing OY4 tetrahedra. In the fifth O2- site, O2- is bonded in a distorted trigonal non-coplanar geometry to two equivalent Y3+ and one Si4+ atom.
DOI: 10.5281/zenodo.6585072
title: Supporting data set for: Three-dimensional Configuration of Induced Magnetic Fields around Mars

description: Supplementary data to reproduce figures for: Three-dimensional Configuration of Induced Magnetic Fields around Mars
DOI: 10.5285/061fc7fd1ca940e7ad685daf146db08f
title: University of Bath: King Edward Point Skiymet meteor radar data (2016-2020)

description: The University of Bath's meteor radar located at the King Edward Point Magnetic Observatory (KEP, 54.2820 S, 36.4930 W) on South Georgia island in the South Atlantic , is an all-sky VHF (Very High Frequency) meteor radar commercially produced Skiymet system. It has been operational since 2016 providing meteor detection and derived wind data in support of the NERC funded South Georgia Wave (SG-WEX) and DRAGON-WEX: The Drake Passage and Southern Ocean Wave Experiments (see linked Project records for further details). The radar detects radio scatter from the ionised trails of individual meteors drifting with the winds of the upper mesosphere, mesopause and lower thermosphere. A low-gain transmitter antenna is used to provide broad illumination of the sky. An array of five receiver antennas act as an interferometer to determine the azimuth and zenith angles of individual meteor echoes. Doppler measurements from each meteor determine the radial drift velocity and the meteor is assumed to be a passive tracer of atmospheric flow. The radar typically detects of order a few thousand meteors per day. These observations can be used to determine zonal and meridional winds in the mesosphere, mesopause and lower thermosphere at heights of about 80 – 100 km and with height and time resolutions of ~ 3 km and 2 hours. The radar produces daily “meteor position data” data files (mpd files) recording the details of each individual meteor echo. In normal operation a few thousand individual meteors are detected per day. See parameter list for details of available data. Recordings are made for each individual meteor detected allowing measurements of zonal and meridional wind speeds in the mesosphere and lower thermosphere to be obtained. Meteor count rates vary diurnally and with season, but are usually up to a few thousand meteors per day.
DOI: 10.6073/pasta/204dc4aa9747ab9b51d2cb04ad9b5cc6
title: PALATABILITY OF TWO RODENTICIDE PRODUCTS: FIELD-BASED ASSESSMENT AT PALMYRA ATOLL

description: This dataset describes the palatability, for the land crab Cardisoma carnifex, of two rodenticide bait products available for conservation use in the U.S.: “25W” containing 25 ppm brodifacoum as the active ingredient, and “D50” containing 50 ppm diphacinone as the active ingredient. Both rodenticide bait products were found to be palatable to rats and crabs when presented alongside three commonly available food items: coconut endosperm (meat), the meristematic tissue of young coconut palms, and the fleshy mesocarp of Pandanus fruit.
DOI: 10.6084/m9.figshare.17125214.v1
title: CONSORT checklist for ‘The effect of siamese pumpkin and tuna-based sow (CHAGURO) diet in improving HbA1c, HDL-C, and Chol/HDL ratios in prediabetes Individuals individuals with dyslipidemia

description: CONSORT checklist for ‘The effect of siamese pumpkin and tuna-based sow (CHAGURO) diet in improving HbA1c, HDL-C, and Chol/HDL ratios in prediabetes Individuals individuals with dyslipidemia’
DOI: 10.6084/m9.figshare.20178416
title: Supplementary Material for: Frame-by-Frame Analysis of a Commercially Available Artificial Intelligence Polyp Detection System in Full-Length Colonoscopies

description: <b><i>Introduction:</i></b> Computer-aided detection (CADe) helps increase colonoscopic polyp detection. However, little is known about other performance metrics like the number and duration of false-positive (FP) activations or how stable the detection of a polyp is. <b><i>Methods:</i></b> 111 colonoscopy videos with total 1,793,371 frames were analyzed on a frame-by-frame basis using a commercially available CADe system (GI-Genius, Medtronic Inc.). Primary endpoint was the number and duration of FP activations per colonoscopy. Additionally, we analyzed other CADe performance parameters, including per-polyp sensitivity, per-frame sensitivity, and first detection time of a polyp. We additionally investigated whether a threshold for withholding CADe activations can be set to suppress short FP activations and how this threshold alters the CADe performance parameters. <b><i>Results:</i></b> A mean of 101 ± 88 FPs per colonoscopy were found. Most of the FPs consisted of less than three frames with a maximal 66-ms duration. The CADe system detected all 118 polyps and achieved a mean per-frame sensitivity of 46.6 ± 26.6%, with the lowest value for flat polyps (37.6 ± 24.8%). Withholding CADe detections up to 6 frames length would reduce the number of FPs by 87.97% (<i>p</i> &lt; 0.001) without a significant impact on CADe performance metrics. <b><i>Conclusions:</i></b> The CADe system works reliable but generates many FPs as a side effect. Since most FPs are very short, withholding short-term CADe activations could substantially reduce the number of FPs without impact on other performance metrics. Clinical practice would benefit from the implementation of customizable CADe thresholds.
DOI: 10.17632/wt84rf8g2t.2
title: Phenological data of a Neotropical savanna community

description: The database provides phenological data on 95 angiosperm species, in plots with natural vegetation and/or in burned plots. We carried out the study in an area of savanna in Brazil. Phenological data can support other studies on these sampled species, involving different aspects of their ecology.
DOI: 10.5281/zenodo.1039314
title: Interoceptive Strength Data - Perceptual Grounding Studies

description: This dataset contains perceptual strength ratings across six modalities (auditory, gustatory, haptic, interoceptive, olfactory, visual) for 32,229 concepts, emotion categories for a subset of 547 concepts and their matched controls, and Elexicon data (lexical decision and word naming accuracy and RT, plus associated lexical predictors) for 19,041 of these concepts.  Also included is analysis code for the studies 1-3 reported in the paper "Interoception: The forgotten modality in perceptual grounding of abstract and concrete concepts".

 

The following files are deposited:

Study 1


	Study 1.jasp
	Study 1 - PCA (SPSS output).htm
	Study 1 plot (R code).R


Study 2


	Study 2 Data.csv
	Study 2_Desc stats (R code).R
	Study 2 plots (R code).R


Study 3


	Study 3.jasp


 

File formats are non-proptierary and comprise csv text files, html files, R code (text files), and JASP files (JASP Team, 2017: version 0.8.3.1)
DOI: 10.5281/zenodo.1311155
title: 2D Crm Datasets For Multiscale Interactions.

description: These are the datasets analyzed in the submitted manuscript titled "The Multiscale Impacts of Organized Convection in Global 2D cloud-resolving Models". These datasets were generated using a version of the  System for Atmospheric Modeling that saves information for the different terms in budgets of the model state.

The files contained in this archive are in tar.gz format. The tarballs are named based on the date of the simulation rather than the names referred to in the manuscript. This table gives the correspondence between these two:

<pre><code>QSTRAT: 2018-05-12-A
Control: 2018-05-13-A
LW: 2018-05-12-C
NoRain: 2018-05-15-NoRevap.SfcHomo.Rad1.5</code></pre>

Each archive contains full resolution 2D snapshots, the coarse-grained budgets, and all the parameter files used by SAM.
DOI: 10.6084/m9.figshare.19867249
title: Supplementary Material for: Long-term risk of stroke after traumatic brain injury: A population-based medical record review study

description: ABSTRACT Objective To reliably inform secondary prevention strategies and reduce morbidity and mortality after traumatic brain injury (TBI), we sought to understand the long-term risk of stroke after TBI in patients aged 40 years and older in comparison to age- and sex-matched referents from a population-based cohort. Materials and Methods TBI cases in Olmsted County, Minnesota from January 1, 1985 to December 31, 1999 were confirmed by manual review, classified by injury severity and mechanism, and non-head trauma was quantified. Each TBI case was matched to 2 sex- and age-matched population-based referents without TBI and with similar severity non-head trauma. Records of cases and referents were manually abstracted to confirm stroke diagnosis. Stroke events during initial hospitalization for TBI were excluded. Results In total, 1,410 TBI cases were confirmed, 61% classified as Possible TBI (least severe, consistent with concussive), with the most common mechanism being falls. There were 162 stroke events among those with TBI (11.5%), and 269 among referents (9.5%). Median time to stroke from the index date for those with TBI was 10.2 years (Q1-Q3 5.2 – 17.8), and for referents 12.1 years (Q1-Q3 6.2-17.3), P = 0.215. All-severity TBI was associated with increased risk of stroke (HR: 1.32, 95% CI: 1.06–1.63, P = 0.011), but only Definite TBI (consistent with moderate-severe) was associated with significant risk (HR: 2.20, 95% CI: 1.04-4.64, P = 0.038) when stratified by severity. Discussion/Conclusion By confirming TBI cases, stroke diagnoses, and injury severity classification using manual review with levels of accuracy not previously reported, these results indicate moderate-severe TBI increases long-term risk for stroke. These findings confirm the need to regularly assess long-term vascular risk after TBI to implement disease prevention strategies.
DOI: 10.5281/zenodo.6838739
title: Additional Data and Code from "Increased energy use for adaptation significantly impacts mitigation pathways".

description: Additional Data and Code from: "Increased energy use for adaptation significantly impacts mitigation pathways". Authors: Francesco Pietro Colelli, Johannes Emmerling, Giacomo Marangoni, Malcolm Mistry, Enrica De Cian This repository contains: - The output data and R-scripts to produce the figures of the manuscript. - The code building the additional WITCH modules and input data generated. The results obtained in the study can be replicated by running the additional WITCH modules and input data in combination with the open source WITCH available in the repository: https://github.com/witch-team/witchmodel
DOI: 10.6084/m9.figshare.9610112
title: Data from "Systematic variation in food web body-size structure linked to external subsidies"

description: Data used in "Systematic variation in food web body-size structure linked to external subsidies"<br> Data included in the deposit are specifically designed for the reproduction of the core analyses of this publication. Therefore, researchers interested in using the data for purposes other than replicating our analyses are advised to contact the corresponding author directly, as other useful information from the original data might not be included.
DOI: 10.6084/m9.figshare.20847739
title: A Novel SNP-STR System Based on a Capillary Electrophoresis Platform

description: 113 unrelated Chinese Han individuals from Sichuan was genotyped using multiplex panels of 18 SNP-STR markers. The concentrations of each primer in the multiplex, haplotype frequencies, observed heterozygosity, expected heterozygosity, and the probability values (<em>p</em>) of the HWE test were all presented.
DOI: 10.6084/m9.figshare.20847739.v1
title: A Novel SNP-STR System Based on a Capillary Electrophoresis Platform

description: 113 unrelated Chinese Han individuals from Sichuan was genotyped using multiplex panels of 18 SNP-STR markers. The concentrations of each primer in the multiplex, haplotype frequencies, observed heterozygosity, expected heterozygosity, and the probability values (<em>p</em>) of the HWE test were all presented.
DOI: 10.6084/m9.figshare.20847027.v1
title: Evaluation of farmers’ wheat production technical efficiency based on income increasing

description: ABSTRACT: Based on the goal of income increasing, this research uses the DEA-BCC model under the input and the output orientation to estimate the differences and changes in the technical efficiency of wheat production by farmers of different scales based on the survey data of 1669 farmers’ wheat production from China’s main wheat-producing regions. Results showed that there are significant differences in the technical efficiency of farmer’s wheat production and the optimal scale of efficiency under the input and the output orientation. The relationship between farmers’ planting scale and efficiency is characterized by U-shaped curves and inverted U-shaped curves respectively. The wheat production technical efficiency of farmers in most major grain production areas is in a DEA ineffective state, and agricultural technical efficiency needs to be improved.