cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.47d7wm3q4
title: Data from: Decreased food intake as a fecundity-dependent cost of reproduction in keelback snakes (Tropidonophis mairii, Colubridae)

description: The physical burden of pregnancy may render females slower and less able
 to evade predation, favouring a reduction in feeding in order to avoid a
 reduction in survivorship. Life-history theory predicts that an organism’s
 optimal level of investment into reproduction depends upon whether or not
 the associated “costs” (such as a decrease in rate of feeding) increase
 with higher fecundity. Anorexia during pregnancy is widespread among
 snakes, but there are few field data on fecundity-dependence of such
 costs. Over a 23-year period, we recorded reproductive condition and
 feeding status (based on palpation and production of faeces) for 3778
 captures of free-ranging female natricine colubrid snakes (keelbacks,
 Tropidonophis mairii) in tropical Australia. Pregnancy reduced feeding
 rates, and that decrease was greatest for females with higher reproductive
 investment (clutch mass relative to maternal mass). Our long-term data
 provide the first clear-cut evidence of fecundity-dependent costs of
 reproduction in free-ranging snakes.
description: Mark-recapture data from adult female snakes during the April -
 July nesting seasons from 1998-2021. Data include female ID number,
 snout-vent length (SVL), body mass, postpartum body mass (PPM) and
 relative clutch mass (RCM). n/a indicates missing data.
description: # Decreased food intake as a fecundity-dependent cost of reproduction in
 keelback snakes (Tropidonophis mairii, Colubridae)
 [https://doi.org/10.5061/dryad.47d7wm3q4](https://doi.org/10.5061/dryad.47d7wm3q4) ## Description of the data and file structure Data are from adult female keelback snakes caught during the April - July nesting seasons between 1998 - 2021. ### Files and variables #### File: female\_keelback\_feeding\_data\_for\_Dryad.xlsx **Description:**  ##### Variables 'n/a' indicates missing data * date- date the snake was captured and measured - ID- individual snake identification code * sex- snake's sex - SVL(cm)- snout to vent length in cm * MASS(g)- body mass in grams prior to laying eggs - PPM(g)- Postpartum body mass in grams after laying eggs * GRAVID?- reproductive status, Y=reproductive N=nonreproductive - food/feces- indicates feeding status. Y= food or feces present, N= no food or feces present * RCM- relative clutch mass, calculated as (Mass - PPM) / PPM
DOI: 10.15468/dl.g8hksw
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptonotus blainvilleanus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 83 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004176-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21223/p3/otyriv
title: Dataset for: Advanced clones of group B3 cycle 3, population B with late blight resistance in Oxapampa, 2012

description: The B3C3 population came from crossing the elite clones of B3C2 population, in 2011 under quarantine greenhouses at La Molina. For this, 30,000 genotypes (60 families with 500 seeds each) were planted. At harvest, 21685 genotypes were selected (72%). These selected clones were planted in La Victoria, Huancayo, to increase the number of tubers and make selection for agronomic attributes, where 3123 clones (10.41% of the original population) were selected. This dataset is part of the following selection where the selected clones were evaluated for three seasons (2012, 2013 and 2014), in Oxapampa where the environmental conditions (rain, relative humidity, temperature) are great to have a high pressure of late blight allowing us to select clones with resistance to this disease. In 2012-2013 at Oxapampa, 3005 clones were planted in observation plots of 5 plants each with two replications. In this experiment, the resistance to late blight of the plants was recorded. And at harvest, the marketable and total tuber yield were measured. Finally, 507 clones were selected.
DOI: 10.5061/dryad.hhmgqnkrp
title: Sample data: Performance prediction of hub-based swarms

description: There are powerful tools for modeling swarms that have strong spatial
 structures like flocks of birds, schools of fish, and formations of
 drones, but relatively little work on developing formalisms for other
 swarm structures like hub-based colonies doing foraging, maintaining a
 nest, or selecting a new nest site. We present a method for finding low
 dimensional representations of swarm state for simulated homogeneous
 hub-based colonies solving the best-of-N problem. The embeddings are
 obtained from latent representations of convolution-based graph neural
 network architectures and have the property that swarm states that have
 similar performance have very similar embeddings. Such embeddings are used
 to classify swarm states into binned estimates of success probability and
 time to completion. We demonstrate how embeddings can be obtained in a
 sequence of experiments that progressively require less information, which
 suggests that the methods can be extended to larger swarms in more
 complicated environments.
description: This is a synthetically generated dataset.
description: # Sample data: Performance prediction of hub-based swarms
 [https://doi.org/10.5061/dryad.hhmgqnkrp](https://doi.org/10.5061/dryad.hhmgqnkrp) ## Description of the data and file structure The data was synthetically generated by running multi-agent simulations and processing the simulations to create graphs. **Description:** Each folder contains sample data along with the code used to generate the predictions. For data from Experiment 2, please email us so we can regenerate it. There are additional README files in each subfolder, where necessary. **Experiment 1:** CreateGraph.ipynb: runs the simulation and creates a graph of collective states GraphAnalysis.ipynb: code for converting graph to Markov Process, creating plots, etc.  GraphEmbeddings.ipynb: code for training a Graph CNN to generate embeddings  **data:** /graphs_and_figs/10614_trials_2_sites/graph.gexf /graphs_and_figs/10614_trials_2_sites/node_info.pickle **Experiment 3:** allGraphs_train: sample graphs for training allGraphs_test: sample graphs for testing GAT_multi_experiment.ipynb: sample notebook used to train and test the GAT network with confusion matrix and embedding plotting code, along with F1 score ## Sharing/Access information *For clarification/access to other data and code, please contact:*  Puneet Jain: [puneetjain2895@gmail.com](mailto:puneetjain2895@gmail.com) Michael Goodrich: [mike@cs.byu.edu](mailto:mike@cs.byu.edu)
DOI: 10.5061/dryad.qjq2bvqrc
title: Temperature and precipitation projections from: Heat disproportionately kills young people: evidence from wet-bulb temperature in Mexico

description: Recent studies project that temperature-related mortality will be the
 largest source of future damage from climate change, with particular
 concern for the elderly (whom it is believed bear the largest heat-related
 mortality risk) and humid heat extremes (which physiology suggests may
 have dire consequences for human health). Here, we study heat and
 mortality in Mexico, a country that exhibits a unique combination of
 universal mortality microdata and among the most extreme humid heat
 exposures. By combining detailed measurements of wet-bulb temperature with
 granular, age-specific outcome data, we find that younger people are
 particularly vulnerable to heat while older people are particularly
 vulnerable to cold: those under 35 years old account for 75% of recent
 heat-related deaths and 87% of heat-related lost life years while those 50
 and older account for 96% of cold-related deaths and 80% of cold-related
 lost life years. We develop high-resolution projections of humid heat and
 associated outcomes holding historically observed exposure–response
 relationships constant. We find that climate change causes
 temperature-related mortality risk in Mexico to shift from older people
 (more vulnerable to cold) to younger people (more vulnerable to heat). As
 a result, under the end-of-century climate in the SSP 3-7.0 emissions
 scenario, temperature-related deaths among under-35-year-olds increase
 32%, while deaths among other age groups decrease by 33%.
description: **Climate projections for** *Heat disproportionately kills young people:
 evidence from wet-bulb temperature in
 Mexico *([https://doi.org/10.1126/sciadv.adq3367](https://doi.org/10.1126/sciadv.adq3367)) This repo contains climate projections produced for the paper "Heat disproportionately kills young people: evidence from wet-bulb temperature in Mexico." Scripts and other data needed for replication can be found at [https://doi.org/10.5281/zenodo.14182718](https://doi.org/10.5281/zenodo.14182718). The structure of the files in this repo follows the pattern: \_.pq All files are parquet format, written using arrow v17. Each file represents a time series of weather variables for each of Mexico's second-order administrative units (municipalities). Projections are made at the level of weather stations active during the study's historical data period and mapped to municipalities according to the methods described in the paper. The variables in each file are: date, scenario (GHG emissions scenario), model (climate model name), either tdb (dry-bulb temperature in ºC) and twb (wet-bulb temperature in ºC) or precip (total daily rainfall, in mm), dist (distance from the closest historical station to the municipality centroid), adm2 (the municipality identifier), year (the year of the date), and period (this is "hist" for historical data or one of "middle" or "end" indicating the middle or end of the 21st century).
DOI: 10.5061/dryad.6q573n66z
title: Dermal collagen fiber data for Fiber Classification by ResNet

description: Type I collagen is a major component of the dermis and is formed by dermal
 fibroblasts. The development of dermal collagen structures has not been
 fully elucidated despite the major presence and importance of the dermis.
 This Lack of understanding is due in part to the opacity of mammalian skin
 and it has been an obstacle to cosmetic and medical developments. We
 succeeded in revealing the process of dermal collagen formation using the
 highly transparent skin of the axolotl and fluorescent collagen probes. We
 clarified that epidermal cells, not dermal fibroblasts, primarily
 contribute to dermal collagen formation. Fibroblasts play a role in
 modifying the collagen fibers already built by keratinocytes. We confirmed
 that collagen production by keratinocytes is a widely conserved mechanism
 in other model organisms. Our findings demand the current consensus about
 dermal collagen formation to change and lead to innovations in cosmetology
 and skin medication.
description: For dimension reduction of collagen image data, we used 484
 collagen images from the confocal images in axolotl dorsal skin for the
 analysis and adopted ResNet50 with ImageNet-pretrained weights
 (ResNet50_Weights.IMAGENET1K_V2 from the torchvision library) for feature
 extraction. We extracted image features from the last global average
 pooling layer. Then, linear PCA was applied to the 2048-dimensional
 feature vectors. We performed no training of the neural network with our
 data; hence, the feature extraction was agnostic on which developmental
 stages the images came from. 
description: # Dermal collagen fiber data for Fiber Classification by ResNet
 [https://doi.org/10.5061/dryad.6q573n66z](https://doi.org/10.5061/dryad.6q573n66z) ## Description of the data and file structure #### File: Ohashi\_et\_al\_2024.zip **Description:** Collagen fibers in the axolotl dermis The folder names ("5cm, 8cm, 10cm, 12cm") indicate the animal sizes. Each file has name `#a-bb-c` * "a" for a sample name, * "b" for a slice name, and * "c" for a position name of an identical slice. All files are saved as a jpeg (jpg) file. In the 10cm and 12cm folders, there are subfolders, entitled the sample name. The sample names are consistent with the names in the paper published in Nature Communication in 2025, Ohashi et al., Figure 9.  Those images were used for ResNet analysis in the paper by Ohashi et al.. 2025. ## Code/software N/A ## Access information Other publicly accessible locations of the data: * n/a Data was derived from the following sources: * n/a
DOI: 10.15468/dl.2cgbuh
title: Occurrence Download

description: A dataset containing 3652 records in GBIF matching the query:
SELECT
 '500' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 51.21395264452012
 AND decimalLatitude &lt;= 56.135291543055025
 AND decimalLongitude &gt;= -93.5416324485818
 AND decimalLongitude &lt;= -80.17725619669127
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 3652 records were derived from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004166-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.beyjmv
title: Occurrence Download

description: A dataset containing 6835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-122.36115 47.86007,-122.40776 47.84919,-122.47302 47.55397,-122.53051 47.44209,-122.55693 47.33643,-122.49788 47.30536,-122.3829 47.36285,-121.57802 47.33333,-121.61532 47.87095,-122.36115 47.86007))",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia",
 "Year 2012-2026"
 ]
}

 The dataset includes 6835 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004177-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x2nqs
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Patagonotothen cornucola",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004178-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.j0zpc86qg
title: First discovery on interspecific parental care of Siberian stonechat (Saxicola maurus) nestlings provided by a male White wagtail (Motacilla alba)

description: Interspecific parental behavior has been reported across worldwide,
 especially in Europe and North America, yet relatively little information
 is available from East Asia. We present the first known interspecific
 parental care by a white wagtail (Motacilla alba) at a nest of Siberian
 stonechat (Saxicola maurus), documented by video in the farmland of
 northwest Yunnan, China. We quantify parental behavior and describe
 aggressive events between the adult Siberian stonechats and the White
 wagtail. Despite incurring no obvious fitness benefit, the White wagtail
 did significantly more feeding attempts than either parent of the Siberian
 stonechats, but did not show significant difference in sanitation
 maneuvers compared to each sex of the stonechat parent. Moreover, the
 three birds’ investment, in terms of food delivery and fecal-sac removal,
 distributed evenly among the five nestlings at the nest. Although
 proximate causes of this behavior are unclear, close nest vicinity with
 host young’s loud begging and the loss of wagtail’s offspring or eggs may
 have triggered this behavior.
description: # First discovery on interspecific parental care of Siberian stonechat
 (Saxicola maurus) nestlings provided by a male White wagtail (Motacilla
 alba)
 [https://doi.org/10.5061/dryad.j0zpc86qg](https://doi.org/10.5061/dryad.j0zpc86qg) ## Description of the data and file structure The White wagtail and female stonechat attacked each other at the latter's nest (Video S1). The male stonechat also attacked and chased the wagtail when the latter came back to feed stonechat's nestling(Video S2).36 minutes after, the wagtail remained in the area around the nest after feeding the nestlings, and responded with aggressive behavior towards the male stonechat when it approached the nest to feeding its’ offspring (Video S3).
DOI: 10.5061/dryad.n2z34tn6h
title: Multi-population genome-wide association studies involving four distinct barley populations

description: The power of genome-wide association studies (GWAS) relies heavily on the
 sample size. A strategy to increase sample size is to combine datasets
 from different populations. However, this approach introduces challenges
 due to heterogeneity between populations. With this data, we set up a
 statistically sound model to account for such heterogeneity. Using this
 model, we combined up to four distinct barley populations in GWAS to
 detect genomic regions associated with heading date and stem lodging. Each
 population represented an applied breeding program with unique
 combinations of growth habit (winter versus spring) and row type (2-rowed
 versus 6-rowed). By comparing single-population GWAS with
 multi-population GWAS, we identified both quantitative trait loci (QTLs)
 that were shared across populations and population-specific QTLs. We found
 that multi-population GWAS provided greater statistical power than
 single-population analyses, revealed QTLs that were undetectable in small
 populations, and explained an overall larger proportion of the phenotypic
 variance.  Our findings offer a promising approach to accelerate
 genomics-based breeding in new breeding populations with limited data.
 This methodology is applicable to a wide range of datasets where sample
 sizes are limited for various reasons.
description: # Multi-population genome-wide association studies involving four distinct
 barley populations
 [https://doi.org/10.5061/dryad.n2z34tn6h](https://doi.org/10.5061/dryad.n2z34tn6h) ## Description of the data and file structure The data consists of genotypes of four barley breeding programs at Nordic Seed and their phenotypic records for heading date and lodging in multi-environmental field trials. All populations were assessed for heading date and lodging. The 6RW population was scored in fewer environments (6–9) compared to other populations, which were scored in 9–18 year-location combinations. In the multi-population GWAS, combining the 6RW population with others resulted in 15 candidate QTLs for heading date and 9 for lodging. Heritability for heading date was generally higher than for lodging. Broad-sense entry-mean heritability ranged from 0.93 (6RW, 6RS) to 0.95 (2RS) for heading date, and from 0.52 (6RW) to 0.80 (2RS) for lodging. Missing data given as NA. ### Files and variables #### File: HeadingDate\_Phenotypes.txt **Description:** The file contains the observations for the heading date used in the genome-wide association studies presented in the paper. #### File: Lodging\_Phenotypes.txt **Description:** The file contains the observations for lodging used in the genome-wide association studies presented in the paper. #### File: RawGenotypes.csv **Description:** The file contains the raw genotypes for all lines studied genetically in the paper. SNP markers are coded as -1/0/1. Markers have been  shuffled in random order to protect data.
DOI: 10.15468/dl.de5tx6
title: Occurrence Download

description: A dataset containing 8497 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agalychnis callidryas"
 ]
}

 The dataset includes 8497 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004179-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3urum3
title: Occurrence Download

description: A dataset containing 61751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Material sample)",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis aureus",
 "Year 1950-2026"
 ]
}

 The dataset includes 61751 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004150-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11049316
title: Detailing Atmospheric Nitrate Chemistry in the Northeastern US Under a Period of Changes in Emissions

description: This data is for the manuscript entitled, "Detailing Atmospheric Nitrate Chemistry in the NortheasternUS Under a Period of Changes in Emissions". Data contain model simulation results and observation results for the oxygen isotopes in nitrate.
DOI: 10.5281/zenodo.11049317
title: Detailing Atmospheric Nitrate Chemistry in the Northeastern US Under a Period of Changes in Emissions

description: This data is for the manuscript entitled, "Detailing Atmospheric Nitrate Chemistry in the NortheasternUS Under a Period of Changes in Emissions". Data contain model simulation results and observation results for the oxygen isotopes in nitrate.
DOI: 10.15468/dl.pyz6sz
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Auchenoceros punctatus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 49 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004181-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.