cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2g35md
title: CCDC 2267173: Experimental Crystal Structure Determination

description: Related Article: Zeng Gao, Lin Liu, Ji-Ren Liu, Wang Wang, Ning-Yuan Yang, Lizhi Tao, Zhong-Liang Li, Qiang-Shuai Gu, Xin-Yuan Liu|2024|Nat. Synth.|4|84|doi:10.1038/s44160-024-00654-x
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k6cv0
title: CCDC 2359622: Experimental Crystal Structure Determination

description: Related Article: Georgia M. Richardson, Thayalan Rajeshkumar, Finlay M. Burke, Scott A. Cameron, Brooke D. Nicholls, Joanne E. Harvey, Robert A. Keyzers, Tane Butler, Simon Granville, Lujia Liu, Julien Langley, Li F. Lim, Nicholas Cox, Nicholas F. Chilton, Jamie Hicks, Nathaniel J. L. K. Davis, Laurent Maron, Mathew D. Anker|2025|Nature Chemistry|17|20|doi:10.1038/s41557-024-01688-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gytkf4
title: Occurrence Download

description: A dataset containing 24040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.46_1",
 "TaxonKey is Dolichonyx oryzivorus (Linnaeus, 1758)"
 ]
}

 The dataset includes 24040 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000070-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/c55e7780bfc9aa80b18e666a78067df2
title: Long-term mid-marsh grasshopper abundance and species diversity at eight GCE-LTER sampling sites

description: Grasshopper abundance and species diversity were investigated at eight sampling sites within the Georgia Coastal Ecosystems (GCE) LTER study area during July or August from 2000 to 2023. Visual surveys were conducted along 8-10 2m by 10m transects randomly allocated within the mid-marsh zone at each site. All grasshoppers observed within each transect were counted and identified to species, if possible. These surveys were conducted as part of the GCE invertebrate monitoring program, and are performed annually to assess long-term changes in relative species abundances across the GCE study area.
DOI: 10.15468/dl.puuq9k
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Anathallis polygonoides (Griseb.) Pridgeon & M.W.Chase"
 ]
}

 The dataset includes 48 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000071-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/935872ae9b32d59d2c59b26856f0ea95
title: Long-term Plant Biomass Monitoring Data from the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia

description: The Georgia Coastal Ecosystems LTER program (GCE) monitors plant biomass annually with the goal of testing the hypothesis that end-of-year biomass varies as a function of 1) freshwater discharge from the Altamaha River (especially in low-marsh plots), 2) local rainfall (especially in high-marsh plots), and 3) average sea level. In 2000 we created permanent plots at all 10 GCE marsh monitoring sites. Plots were established at creek-bank and mid-marsh sites (8 plots per zone per site). Most sites are dominated by Spartina alterniflora (smooth cordgrass), but zones at some sites are dominated by Juncus roemerianus, Spartina cynosuroides, or Zizaniopsis miliacea. An additional marsh zone (high marsh Juncus) was established at site 10 in 2005 and site 9 in 2012 to increase replication of sites with Juncus. Plants have been non-destructively monitored in October of every year from 2000 to the present, measuring the stem count, height and flowering status of every plant in each plot. Stem clipping samples were also collected adjacent to plots in 2002, 2007, and 2020, then measured, dried, weighed and statistically analyzed in order to generate allometric regression relationships between height and mass for estimation of plant biomass in corresponding plots. This data set includes cumulative long-term observations of plant stem count, height and biomass per marsh zone, plot and species at 10 GCE LTER sampling sites from 2000 to 2023, and will be updated annually to include the prior year observations.
DOI: 10.15468/dl.9zrfvw
title: Occurrence Download

description: A dataset containing 572493 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Protonotaria S.F.Baird, 1858"
 ]
}

 The dataset includes 572493 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/92e4ed72f734fcd31ed4b15406e70ca2
title: Long-term Burrowing Crab Population Abundance Data from the Georgia Coastal Ecosystems LTER Fall Marsh Monitoring Program

description: This data set includes long-term observational data on burrowing crab abundance at 10 Georgia Coastal Ecosystems marsh sites used for annual plant and invertebrate population monitoring. Crab abundance was determined by performing surveys of crab hole occurance within replicate 625 square centimeter quadrats and converting the counts to number per square meter. Surveys were performed annually during October within the mid-marsh and creek bank zones at GCE marsh study sites 1 through 10 (i.e. n = 4 per zone at each site). Surveys were also performed in an additional high marsh Juncus zone at several sites beginning in 2009 (i.e. n = 4 quadrats per site). Note that this census method does not differentiate which species made a particular hole and therefore only estimates total burrowing crab abundance, potentially including species Uca pugnax, Uca minax, Uca pugilator, Armases cinereum, Eurytium limosum, Sesarma reticulatum and Panopeus spp. Crab holes that are not actively maintained are quickly covered by tidal activity and other sediment disturbances, therefore plugged holes were assumed to be unoccupied and excluded from the counts. This data set includes cumulative observations from 2000 to 2023, and will be updated annually to include the prior year observations.
DOI: 10.6073/pasta/787abff09f3bb03c2350aa512cf4ed4e
title: Long-term Plant Biomass Monitoring Data from Altamaha River Plant Transition Sites near the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia

description: The Georgia Coastal Ecosystems LTER program (GCE) monitors plant biomass annually to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in a separate data set (PLT-GCEM-1801c). This data set includes cumulative long-term observations of plant stem count, height and biomass per plot and species at 3 Altamaha River transition sites from 2012 to 2023, and will be updated annually to include the prior year observations.
DOI: 10.5281/zenodo.14941392
title: Proteomic results from rice seed embryos subjected to controlled deterioration treatments (25°C, 40°C, 45°C; 83 RH ; 15 days)

description: Proteomic dataset on rice (Oryza sativa ssp japonica cv Nipponbare) seed embryos subjected to a controlled deterioration treatment at 25, 40 or 45°C during 15 days at 83% relative humidity (see below).

Protocol: control seeds refer to seeds kept at 4°C and 30% RH while other seed batches underwent controlled deterioration treatments. A high RH was used according to the described deterioration treatment (Tesnier et al. 2002). Seeds were equilibrated for 3 days at 83% RH at 25°C using a saturated solution of NaCl and control samples were immediately dried back for 3 days at 32% RH (25°C) in the presence of a saturated solution of CaCl2. The storage treatment at high RH was performed for various durations (from 1 to 15 d) by storing the seeds at 83% RH at either 25, 40 or 45°C. Seeds were then dried back for 3 days at 32% RH (25°C) and stored at 4°C in airtight tubes until germination tests.
DOI: 10.5281/zenodo.14941393
title: Proteomic results from rice seed embryos subjected to controlled deterioration treatments (25°C, 40°C, 45°C; 83 RH ; 15 days)

description: Proteomic dataset on rice (Oryza sativa ssp japonica cv Nipponbare) seed embryos subjected to a controlled deterioration treatment at 25, 40 or 45°C during 15 days at 83% relative humidity (see below).

Protocol: control seeds refer to seeds kept at 4°C and 30% RH while other seed batches underwent controlled deterioration treatments. A high RH was used according to the described deterioration treatment (Tesnier et al. 2002). Seeds were equilibrated for 3 days at 83% RH at 25°C using a saturated solution of NaCl and control samples were immediately dried back for 3 days at 32% RH (25°C) in the presence of a saturated solution of CaCl2. The storage treatment at high RH was performed for various durations (from 1 to 15 d) by storing the seeds at 83% RH at either 25, 40 or 45°C. Seeds were then dried back for 3 days at 32% RH (25°C) and stored at 4°C in airtight tubes until germination tests.
DOI: 10.15468/dl.hdq2v4
title: Occurrence Download

description: A dataset containing 5319362 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is INSDC Sequences"
 ]
}

 The dataset includes 5319362 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000072-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14927197
title: Model weights and training, validation, and test set images and masks for "Uncovering a million small dams in Brazil using deep learning"

description: Annotated masks and Sentinel-1/-2 images split into training, validation, and test sets. Used for training convolutional neural network for small reservoir mapping. 

- manet_sentinel.ckpt: PyTorch model checkpoint file containing model weights.

- annotations.zip:  Contains binary reservoir masks (0 is non-reservoir, 1 is reservoir) split into training, validation, and test sets.

- images.zip: Contains Sentinel-1/-2 images split into training, validation, and test sets with the following bands:



Blue

Green

Red

Near-infrared

Sentinel-1 SAR VV

Sentinel-1 SAR VH

NDVI

NDWI

Gao's NDWI

MNDWI
DOI: 10.34740/kaggle/dsv/10874408
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.13026/e0cx-1k53
title: PIFIR: PET-CT Invasive Fungal Infection Reports

description: Surveillance of invasive fungal infection (IFI) in clinical settings is a
laborious process requiring a detailed review of patient medical history. One
of the key sources of clinical information is imaging reports: radiologist-
produced free-text reports summarising findings and observations from a scan.
Positron emission tomography combined with computed tomography (PET-CT) is a
medical imaging modality particularly useful in ruling out IFIs and evaluating
the response to anti-fungal therapy. The data was generated to facilitate the
development of an automated tool for the detection of IFI. The PET-CT Invasive
Fungal Infection Reports (PIFIR) corpus contains 201 de-identified reports
annotated by radiologists for terminology suggestive of the presence of IFI.
These include IFI-related concepts and certainty cues, as well as relations
between them. We release the annotation schema and the original reports along
with the corresponding annotation files. We anticipate the PIFIR corpus to be
useful in the development and validation of named entity recognition and
relation extraction methods with a focus on clinical data. Such methods can be
instrumental in processing other types of clinical documentation (clinical
notes, nursing notes) with various downstream tasks in mind.
DOI: 10.13026/d51v-j343
title: PIFIR: PET-CT Invasive Fungal Infection Reports

description: Surveillance of invasive fungal infection (IFI) in clinical settings is a
laborious process requiring a detailed review of patient medical history. One
of the key sources of clinical information is imaging reports: radiologist-
produced free-text reports summarising findings and observations from a scan.
Positron emission tomography combined with computed tomography (PET-CT) is a
medical imaging modality particularly useful in ruling out IFIs and evaluating
the response to anti-fungal therapy. The data was generated to facilitate the
development of an automated tool for the detection of IFI. The PET-CT Invasive
Fungal Infection Reports (PIFIR) corpus contains 201 de-identified reports
annotated by radiologists for terminology suggestive of the presence of IFI.
These include IFI-related concepts and certainty cues, as well as relations
between them. We release the annotation schema and the original reports along
with the corresponding annotation files. We anticipate the PIFIR corpus to be
useful in the development and validation of named entity recognition and
relation extraction methods with a focus on clinical data. Such methods can be
instrumental in processing other types of clinical documentation (clinical
notes, nursing notes) with various downstream tasks in mind.
DOI: 10.5281/zenodo.14940612
title: Exercise 2 for PyMCA workshop at Diamond

description: Experimental XRF data collected at the the hard X-ray nanoprobe beamline (I14 beamline) at the Diamond Light Source. The purpose of this data deposition is to provide relevant experimental data for the workshop: Fundamentals of PyMCa and MANTiS for XRF and XANES (held in Diamond on March 2025).

The XRF data was collected as part of the proposal sp20552-1 and is part of an already published dataset at: https://doi.org/10.1002/anie.202016456
DOI: 10.5281/zenodo.14940613
title: Exercise 2 for PyMCA workshop at Diamond

description: Experimental XRF data collected at the the hard X-ray nanoprobe beamline (I14 beamline) at the Diamond Light Source. The purpose of this data deposition is to provide relevant experimental data for the workshop: Fundamentals of PyMCa and MANTiS for XRF and XANES (held in Diamond on March 2025).

The XRF data was collected as part of the proposal sp20552-1 and is part of an already published dataset at: https://doi.org/10.1002/anie.202016456
DOI: 10.15468/dl.np68ag
title: Occurrence Download

description: A dataset containing 16898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hepatica acutiloba DC."
 ]
}

 The dataset includes 16898 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000073-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3hnr4
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (90fd6680-349f-11d8-aa2d-b8a03c50a862, 33d232b5-5cc2-4521-8bd6-121c5bb41c32, 8e1a97a0-3ca8-11d9-8439-b8a03c50a862, 061b4f20-f241-11da-a328-b8a03c50a862, 396d5f30-dea9-11db-8ab4-b8a03c50a862, 8d861745-d64d-419e-a9ea-251f56a631a7, c0758a16-296b-4ec3-97fd-8a057d9060f3, c54097e6-0972-4acb-b849-eaeba29c917d, e1f3033f-176a-4e5e-8b97-7f1f000fcc2a)",
 "TaxonKey is Anadenanthera colubrina (Vell.) Brenan"
 ]
}

 The dataset includes 41 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000074-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/1zjy-gr64
title: UCD736 NIRSpec+IFU Data
DOI: 10.15468/dl.tuxa7r
title: Occurrence Download

description: A dataset containing 11030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acmena ingens (F.Muell. ex C.Moore) Guymer & B.Hyland, Acronychia pubescens (F.M.Bailey) C.T.White, Acronychia oblongifolia (Hook.) Endl., Acronychia suberosa C.T.White, Argyrodendron actinophyllum (F.Muell.) Edlin, Argyrodendron trifoliolatum F.Muell., Atractocarpus benthamianus (F.Muell.) Puttock, Akania bidwillii (Hend. ex Hogg) Mabb., Anthocarapa nitidula (Benth.) T.D.Penn. ex Mabb., Baloghia inophylla (G.Forst.) P.S.Green, Brachychiton acerifolius (A.Cunn. ex G.Don) F.Muell., Beilschmiedia elliptica C.T.White & W.D.Francis, Cupaniopsis flagelliformis (F.M.Bailey) Radlk., Citronella moorei (F.Muell. ex Benth.) R.A.Howard, Diospyros pentamera (Woolls & F.Muell.) F.Muell., Diploglottis australis (G.Don) Radlk., Doryphora sassafras Endl., Dysoxylum fraserianum (A.Juss.) Benth., Dysoxylum rufum (A.Rich.) Benth., Ehretia acuminata R.Br., Elattostachys nervosa (F.Muell.) Radlk., Emmenosperma alphitonioides F.Muell., Eupomatia laurina R.Br., Guioa semiglauca (F.Muell.) Radlk., Guilfoylia monostylis (Benth.) F.Muell., Halfordia kendack (Montrouz.) Guillaumin, Helicia glabriflora F.Muell., Karrabina benthamiana (F.Muell.) Rozefelds & H.C.Hopkins, Litsea reticulata Benth. & Hook.fil. ex F.Muell., Melicope micrococca (F.Muell.) T.G.Hartley, Mischocarpus australis S.T.Reynolds, Orites excelsus R.Br., Quintinia verdonii F.Muell., Sarcopteryx stipata (F.Muell.) Radlk., Syzygium crebrinerve (C.T.White) L.A.S.Johnson, Polyscias elegans (C.Moore & F.Muell.) Harms, Phaleria chermsideana (Bailey) C.T.White, Polyosma cunninghamii Benn., Vitex lignum-vitae A.Cunn. ex S.Schauer, Wilkiea austroqueenslandica Domin, Wilkiea huegeliana (Tul.) A.DC.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is Australia",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 11030 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000076-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8u724
title: Occurrence Download

description: A dataset containing 267353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, North America, Antarctica, Asia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Larix Mill."
 ]
}

 The dataset includes 267353 records from 1061 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000072-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5sxrd
title: Occurrence Download

description: A dataset containing 124563 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is University of Tartu Natural History Museum and Botanical Garden Botanical Collections"
 ]
}

 The dataset includes 124563 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020632-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3jsbj
title: Occurrence Download

description: A dataset containing 6082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parablennius pilicornis (Cuvier, 1829)",
 "Year 1985-2025"
 ]
}

 The dataset includes 6082 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020635-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3s6rjz
title: Occurrence Download

description: A dataset containing 123559 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insecta collection of Museum of Natural and Environmental History, Shizuoka"
 ]
}

 The dataset includes 123559 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020631-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1059378.10fu
title: SH1059378.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.