cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13314167
title: Dataset: Ensemble results comparing L-dependent radial diffusion

description: Simulation data used in the creation of plots in "Two methods to analyse radial diffusion ensembles: the peril of space- and time- dependent diffusion".
DOI: 10.15468/dl.gxzdnn
title: Occurrence Download

description: A dataset containing 2337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hexanchus griseus (Bonnaterre, 1788)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 2337 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118419-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23458877
title: <b>Supplementary information </b><b>supporting the 2024 comment by Laurence Gaume and Marion Desquilbet on the 2021 InsectChange data paper published in Ecology by van Klink et al.</b>

description: <b>Appendices, datasheets and scripts supporting the 2024 comment by Laurence Gaume and Marion Desquilbet on the 2021 InsectChange data paper published in Ecology by van Klink et al.</b><b><i>Appendix S1.pdf </i></b>lists and explains the problems encountered in InsectChange for each study.<b><i>Appendix S2.pdf </i></b>summarises the inclusion of freshwater noninsects in the InsectChange assemblages.<b><i>Appendix S3.pdf </i></b>describes the InsectChange-included datasets specifically designed to study particular factors of insect change and highlights the factor-induced situations that favour an increase or decrease in insects.<b><i>Problems.xlsx</i></b><b> </b>details information at the study level on the different problem types identified in InsectChange and their occurrence, the specific factor/driver in studies with an experimental or a major disturbing factor, the associated habitat change and the expected change in insect dynamics.<b><i>Fig2and5.xlsx</i></b><b> </b>provides information supporting Figures 2 and 5 of the comment, with one sheet per sub-figure.<b><i>FreshwaterNonInsects.xlsx</i></b><b> </b>details information at the plot level on the freshwater invertebrate assemblages including non-insects that have been considered in the InsectChange database.<b><i>CroplandCover.xlsx</i></b><b> </b>details information at the plot level on the adequacy of the local cropland cover for terrestrial plots and the adequacy of geographic coordinates for freshwater plots in InsectChange.<b><i>Stat_Invertebrates.zip</i></b><i> </i>provides data, scripts, outputs and images for the analyses of problem types and invertebrate trends of InsectChange carried out in the RStudio project <i>Stat_Invertebrates.Rproj</i>.<br>
DOI: 10.5281/zenodo.11047960
title: A single-cell atlas of multiple myeloma disease evolution

description: This version is out of date - please see latest version (v4)

A collection of computationally integrated (batch corrected) scRNA-seq and scTCR-seq data from a large cohort of bone marrow and peripheral blood samples from patients with multiple myeloma, myeloma precursor disease (MGUS and SMM) and non-cancer controls.

Datasets



dataDescription.xlsx - Definition of dataset components.

panImmune.h5ad - All cells types integrated object.

Tcell.h5ad - T cells integrated object.

Tcell-scTCR.csv - Single-cell TCR data.

metadata.donor.csv - Donor metadata.


Published data acquisition

Data shared through the gene expression omnibus (GEO) can be accessed for Maura et al. under accession GSE161195, Bailur et al. under accession GSE163278, Oetjen et al. under accession GSE120221, Granja et al. under accession GSE139369, Zavidij et al. under accession GSE124310, Kfoury et al. under accession GSE143791, and Zheng et al. under accession GSE156728. Data shared via dbGaP for Sklavenitis-Pistofidis et al. can be accessed under accession phs002476.v1.p1. Data shared online can be accessed for Stephenson et al. (via https://covid19cellatlas.org/), Conde et al. (via https://www.tissueimmunecellatlas.org/), and Liu et al. (via https://explore.data.humancellatlas.org/projects/2ad191cd-bd7a-409b-9bd1-e72b5e4cce81). Single-cell data from Sklavenitis-Pistofidis et al. and extended clinical data from Maura et al. (i.e. paraprotein) are omitted and must be acquired through direct contact with these authors.

Contact information 



Kane Foster - kane.foster.19@ucl.ac.uk

Kwee Yong - kwee.yong@ucl.ac.ul


Please cite our pre-print if you use this resource in your research.
DOI: 10.5281/zenodo.13199890
title: A single-cell atlas of multiple myeloma disease evolution

description: This version is out of date - please see latest version (v4)

A collection of computationally integrated (batch corrected) scRNA-seq and scTCR-seq data from a large cohort of bone marrow and peripheral blood samples from patients with multiple myeloma, myeloma precursor disease (MGUS and SMM) and non-cancer controls.

Datasets



dataDescription.xlsx - Definition of dataset components.

panImmune.h5ad - All cells types integrated object.

Tcell.h5ad - T cells integrated object.

Tcell-scTCR.csv - Single-cell TCR data.

metadata.donor.csv - Donor metadata.


Published data acquisition

Data shared through the gene expression omnibus (GEO) can be accessed for Maura et al. under accession GSE161195, Bailur et al. under accession GSE163278, Oetjen et al. under accession GSE120221, Granja et al. under accession GSE139369, Zavidij et al. under accession GSE124310, Kfoury et al. under accession GSE143791, and Zheng et al. under accession GSE156728. Data shared via dbGaP for Sklavenitis-Pistofidis et al. can be accessed under accession phs002476.v1.p1. Data shared online can be accessed for Stephenson et al. (via https://covid19cellatlas.org/), Conde et al. (via https://www.tissueimmunecellatlas.org/), and Liu et al. (via https://explore.data.humancellatlas.org/projects/2ad191cd-bd7a-409b-9bd1-e72b5e4cce81). Single-cell data from Sklavenitis-Pistofidis et al. and extended clinical data from Maura et al. (i.e. paraprotein) are omitted and must be acquired through direct contact with these authors.

Contact information 



Kane Foster - kane.foster.19@ucl.ac.uk

Kwee Yong - kwee.yong@ucl.ac.ul


Please cite our pre-print if you use this resource in your research.
DOI: 10.15468/dl.bkfd9d
title: Occurrence Download

description: A dataset containing 25733 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ZUEC-AMP - Coleção de Anfíbios do Museu de Zoologia da UNICAMP"
 ]
}

 The dataset includes 25733 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118420-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bk859z
title: Occurrence Download

description: A dataset containing 4402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Notorynchus cepedianus (Péron, 1807)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 4402 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118421-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2agre2
title: Occurrence Download

description: A dataset containing 51423487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 51423487 records from 3534 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118414-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ofnuzo
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Encyclia pachyantha (Lindl.) Hoehne"
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007353-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmhfbr
title: Occurrence Download

description: A dataset containing 22875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.19677 8.79744,-70.69593 8.79744,-70.69593 13.04355,-75.19677 13.04355,-75.19677 8.79744))",
 "TaxonKey is Tyrannus melancholicus Vieillot, 1819"
 ]
}

 The dataset includes 22875 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030728-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auezhv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achalinus meiguensis Hu & Zhao, 1966"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031745-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cabmz
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fagus orientalis Lipsky"
 ]
}

 The dataset includes 689 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007353-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gr52n2
title: Occurrence Download

description: A dataset containing 3551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-10000.0",
 "Geometry POLYGON((-121.74726 32.20575,-78.49624 24.61093,-67.43185 46.75715,-123.19694 48.10112,-121.74726 32.20575))",
 "HasCoordinate is true",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 3551 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030726-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubmvf7
title: Occurrence Download

description: A dataset listing the 257 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "StateProvince is one of (santander)"
 ]
 }
 ]
}

 The dataset's 257 records were derived from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116375-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jc1d6
title: Occurrence Download

description: A dataset containing 1765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uganda",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((23.60 -3.56,23.60 5.20,37.38 5.20,37.38 -3.56,23.60 -3.56))",
 "DatasetKey is The System-wide Information Network for Genetic Resources (SINGER)"
 ]
}

 The dataset includes 1765 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007354-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uccb8d
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((286.36937 -50.6185,285.72421 -51.73477,284.59816 -53.68307,283.71235 -55.21572,286.29456 -56.41374,288.60495 -52.43935,286.36937 -50.6185))",
 "Geometry POLYGON((-78.04084 -44.9805,-84.36313 -59.4691,-67.50367 -58.94225,-68.5574 -44.45365,-78.04084 -44.9805))"
 ]
 },
 "TaxonKey is Diloma nigerrimum (Gmelin, 1791)"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017976-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8pcyb
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is MARINe/PISCO: Intertidal: MARINe Long-Term Monitoring Surveys: Sea Stars and Katharina"
 ]
}

 The dataset's 11 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116393-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwdk1f
title: Occurrence Download

description: A dataset containing 6481 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bugeranus carunculatus (Gmelin, 1789)"
 ]
}

 The dataset includes 6481 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007354-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewwtfc
title: Occurrence Download

description: A dataset containing 14236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "DatasetKey is Xeno-canto - Bird sounds from around the world",
 "Year 2009-2021"
 ]
}

 The dataset includes 14236 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067181-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv9j8x
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Ecuador",
 "Country is Peru"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Solanum minutifoliolum Correll"
 ]
}

 The dataset includes 39 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0355547-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33r6dn
title: Occurrence Download

description: A dataset containing 1285 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tomocerus vulgaris (Tullberg, 1871)"
 ]
}

 The dataset includes 1285 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114233-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wt58r
title: Occurrence Download

description: A dataset containing 1197 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium J Räsänen"
 ]
}

 The dataset includes 1197 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056267-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.downmm
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Boissiera squarrosa (Banks & Sol.) Nevski"
 ]
}

 The dataset includes 59 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007356-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emkgce
title: Occurrence Download

description: A dataset containing 1872 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fragaria orientalis Losinsk."
 ]
}

 The dataset includes 1872 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005580-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v38uzr
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "PublishingOrg is 676782cc-e81e-47ce-9504-34ea45395eb6",
 {
 "or" : [
 "TaxonKey is Bombus pratorum (Linnaeus, 1761)",
 "TaxonKey is Bombus rupestris (Fabricius, 1793)"
 ]
 }
 ]
}

 The dataset includes 200 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019511-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtmudy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Saxifraga lowndesii HarrySm."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007355-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tdu22b
title: Occurrence Download

description: A dataset containing 724558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2023-08-27",
 "EventDate is less than or equal to 2023-09-26",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 724558 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023467-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e78apg
title: Occurrence Download

description: A dataset containing 14236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "DatasetKey is Xeno-canto - Bird sounds from around the world",
 "Year 2009-2021"
 ]
}

 The dataset includes 14236 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067183-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aj8cat
title: Occurrence Download

description: A dataset containing 24747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pitangus sulphuratus (Linnaeus, 1766)",
 "Country is Mexico"
 ]
}

 The dataset includes 24747 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007355-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qk56u
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Chrysocyon brachyurus (Illiger, 1815), Canis brachyurus Illiger, 1815)",
 "Year 1816-1946"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023465-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbpzy6
title: Occurrence Download

description: A dataset containing 2595 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "TaxonKey is Crocidosema plebejana Zeller, 1847"
 ]
}

 The dataset includes 2595 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116378-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8w5tsm
title: Occurrence Download

description: A dataset containing 2495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Streptopelia decaocto (Frivaldszky, 1838)",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((4.76 38.37,4.76 44.91,18.53 44.91,18.53 38.37,4.76 38.37))"
 ]
}

 The dataset includes 2495 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007355-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssjeua
title: Occurrence Download

description: A dataset containing 147421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Varroa destructor Anderson & Trueman, 2000",
 "Year 1985-2023"
 ]
}

 The dataset includes 147421 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035627-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r5mwrm
title: Occurrence Download

description: A dataset containing 189983 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eupatorium cannabinum L."
 ]
}

 The dataset includes 189983 records from 468 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007355-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.