cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12851295
title: Evaluation of the Health Impacts of the 1990 Clean Air Act Amendments Using Causal Inference and Machine Learning

description: We develop a causal inference approach to estimate the number of adverse health events that were prevented due to changes in exposure to multiple pollutants attributable to a large-scale air quality intervention/regulation, with a focus on the 1990 Clean Air Act Amendments (CAAA). We introduce a causal estimand called the total events avoided (TEA) by the regulation, defined as the difference in the number of health events expected under the no-regulation pollution exposures and the number observed with-regulation. We propose matching and machine learning methods that leverage population-level pollution and health data to estimate the TEA. Our approach improves upon traditional methods for regulation health impact analyses by formalizing causal identifying assumptions, using population-level data, minimizing parametric assumptions, and collectively analyzing multiple pollutants. To reduce model-dependence, our approach estimates cumulative health impacts in the subset of regions with projected no-regulation features lying within the support of the observed with-regulation data, thereby providing a conservative but data-driven assessment to complement traditional parametric approaches. We analyze the health impacts of the CAAA in the U.S. Medicare population in the year 2000, and our estimates suggest that large numbers of cardiovascular and dementia-related hospitalizations were avoided due to CAAA-attributable changes in pollution exposure. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.12851295.v2
title: Evaluation of the Health Impacts of the 1990 Clean Air Act Amendments Using Causal Inference and Machine Learning

description: We develop a causal inference approach to estimate the number of adverse health events that were prevented due to changes in exposure to multiple pollutants attributable to a large-scale air quality intervention/regulation, with a focus on the 1990 Clean Air Act Amendments (CAAA). We introduce a causal estimand called the total events avoided (TEA) by the regulation, defined as the difference in the number of health events expected under the no-regulation pollution exposures and the number observed with-regulation. We propose matching and machine learning methods that leverage population-level pollution and health data to estimate the TEA. Our approach improves upon traditional methods for regulation health impact analyses by formalizing causal identifying assumptions, using population-level data, minimizing parametric assumptions, and collectively analyzing multiple pollutants. To reduce model-dependence, our approach estimates cumulative health impacts in the subset of regions with projected no-regulation features lying within the support of the observed with-regulation data, thereby providing a conservative but data-driven assessment to complement traditional parametric approaches. We analyze the health impacts of the CAAA in the U.S. Medicare population in the year 2000, and our estimates suggest that large numbers of cardiovascular and dementia-related hospitalizations were avoided due to CAAA-attributable changes in pollution exposure. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.5281/zenodo.4017399
title: The sensitivity of British weather to ocean tides.

description: Data to reproduce the figures in the publication: "The sensitivity of British weather to ocean tides." Details on contents of each file are provided in the filename. An explanation of the variable names: votemper_top = sea surface temperature (SST) votemper_bot = sea bed temperature (SBT) strat = (SST – SBT) ATM_SHELF250_inv_mask.nc: a mask on the atmospheric grid used to define which areas lie over where the bathymetry is over 250m and over land. ATM_shelf_narrow_ESW_mask.nc: a mask on the atmospheric grid used to define the 'GB' area.
DOI: 10.5281/zenodo.4018876
title: Dietary diversity and evolution of the earliest flying vertebrates revealed by dental microwear texture analysis

description: Supporting data for: Bestwick <em>et al.</em> (accepted) ‘Dietary diversity and evolution of the earliest true flying vertebrates revealed by dental microwear texture analysis’. Nature Communications. Data include .xlsx files of: Raw 3D microwear texture data for all extant reptiles and bats and for all pterosaurs included in the study Dietary breakdowns of extant reptiles and bats used in analyses Results of microwear texture differences between bat dietary guilds ISO texture parameter definitions Dietary correlation results between dietary component and PC 1 and 2 values Estimated ancestral PC 1 and 2 values for each node from the three phylogenies used in the ancestral pterosaur dietary state reconstructions. Also includes example R code used in the pterosaur dietary evolution reconstructions.
DOI: 10.5281/zenodo.4018875
title: Dietary diversity and evolution of the earliest flying vertebrates revealed by dental microwear texture analysis

description: Supporting data for: Bestwick <em>et al.</em> (accepted) ‘Dietary diversity and evolution of the earliest true flying vertebrates revealed by dental microwear texture analysis’. Nature Communications. Data include .xlsx files of: Raw 3D microwear texture data for all extant reptiles and bats and for all pterosaurs included in the study Dietary breakdowns of extant reptiles and bats used in analyses Results of microwear texture differences between bat dietary guilds ISO texture parameter definitions Dietary correlation results between dietary component and PC 1 and 2 values Estimated ancestral PC 1 and 2 values for each node from the three phylogenies used in the ancestral pterosaur dietary state reconstructions. Also includes example R code used in the pterosaur dietary evolution reconstructions.
DOI: 10.5281/zenodo.4032306
title: Data and reproducible scripts for "Distribution of Putative Self-resistance Genes for Antibiotic Biosynthetic Gene Cluster in Actinobacteria"

description: Data and reproducible scripts for "Distribution of Putative Self-resistance Genes for Antibiotic Biosynthetic Gene Cluster in Actinobacteria"
DOI: 10.5281/zenodo.4032305
title: Data and reproducible scripts for "Distribution of Putative Self-resistance Genes for Antibiotic Biosynthetic Gene Cluster in Actinobacteria"

description: Data and reproducible scripts for "Distribution of Putative Self-resistance Genes for Antibiotic Biosynthetic Gene Cluster in Actinobacteria"
DOI: 10.26025/1912/24795
title: Sea-level rise will drive divergent sediment transport patterns on fore reefs and reef flats, potentially causing erosion on Atoll Islands

description: Atoll reef islands primarily consist of unconsolidated sediment, and their ocean-facing shorelines are maintained by sediment produced and transported across their reefs. Changes in incident waves can alter cross-shore sediment exchange and thus affect the sediment budget and morphology of atoll reef islands. Here we investigate the influence of sea-level rise and projected wave climate change on wave characteristics and cross-shore sediment transport across an atoll reef at Kwajalein Island, Republic of the Marshall Islands. Using a phase-resolving model, we quantify the influence on sediment transport of quantities not well-captured by wave-averaged models, namely wave asymmetry and skewness and flow acceleration. Model results suggest that for current reef geometry, sea level, and wave climate, potential bedload transport is directed onshore, decreases from the fore reef to the beach, and is sensitive to the influence of flow acceleration. We find that a projected 12% decrease in annual wave energy by 2100 CE has negligible influence on reef flat hydrodynamics. However, 0.5-2.0 m of sea-level rise increases wave heights, skewness, and shear stress on the reef flat, and decreases wave skewness and shear stress on the fore reef. These hydrodynamic changes decrease potential sediment inputs onshore from the fore reef where coral production is greatest, but increase potential cross-reef sediment transport from the outer reef flat to the beach. Assuming sediment production on the fore reef remains constant or decreases due to increasing ocean temperatures and acidification, these processes have the potential to decrease net sediment delivery to atoll islands, causing erosion.
DOI: 10.25919/5f626adf24aed
title: Parkes observations for project P1063 semester 2020APRS_13

description: We propose to use the Parkes UWL receiver for monitoring a small sub-set of the FAST-discovered pulsars, with special properties. The Parkes UWL system provides a unique capability for studying the pulsars over wide bandwidths. The observation proposed will provide significant insight into the special emission properties of these new discoveries and facilitate science.
DOI: 10.17632/ttccnvj8sj.4
title: The identification and functional analysis of CD8+PD-1+CD161+ T cells in hepatocellular carcinoma

description: Immunotherapy is a powerful therapeutic strategy for end-stage hepatocellular carcinoma (HCC). It is well known that T cells, including CD8+PD-1+ T cells play important roles involving tumor development. However, their underlying phenotypic and functional differences of T cell subsets remain unclear. We constructed single-cell immune contexture involving approximate 20,000,000 immune cells from 15 pairs of HCC tumor and non-tumor adjacent tissues and 10 blood samples (including 5 of HCCs and 5 of healthy controls) by mass cytometry. scRNA-seq and functional analysis were applied to explore the function of cells. Multi-color fluorescence staining and tissue microarrays were used to identify the pathological distribution of CD8+PD-1+CD161+/- T cells and their potential clinical implication. The differential distribution of CD8+ T cells subgroups was identified in tumor and non-tumor adjacent tissues. The proportion of CD8+PD1+CD161+ T cells was significantly decreased in tumor tissues, whereas the ratio of CD8+PD1+CD161- T cells was much lower in non-tumor adjacent tissues. Diffusion analysis revealed the distinct evolutionary trajectory of CD8+PD1+CD161+ and CD8+PD1+CD161- T cells. scRNA-seq and functional study further revealed the stronger immune activity of CD8+PD1+CD161+ T cells independent of MHC class II molecules expression. Interestingly, similar change of the ratio of CD8+CD161+/ CD8+CD161- T cells was also found in peripheral blood samples collected from HCC cases, indicating their potential usage clinically. We here identified different distribution, function and trajectory of CD8+PD-1+CD161+ and CD8+PD-1+CD161- T cells in tumor lesions, which provided new insights for the heterogeneity of immune environment in HCCs and also shed light on the potential target for immunotherapy.
DOI: 10.17632/6fd493866k.1
title: Data on different sized particulate matter concentration produced from a construction activity

description: The dataset was acquired from an experimental investigation by monitoring PM10, PM2.5, and PM1 concentration produced while building a solid concrete block wall. Alphasense OPC-N2 sensors and Sharp GP2Y1010 sensors were collocated in each of the monitoring stations (MS) to measure the PM concentration. The data was collected at 2 seconds time interval during the entire 40-minutes of the activity.
DOI: 10.17632/32b66xt6ff.1
title: Green Innovation Research Dataset (1995-2019)

description: The Green Innovation research & publication dataset, which was indexed by Scopus from 1995 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/tsgbj2536v.1
title: Data for: Elevated tropospheric ozone alters soil carbon and nitrogen dynamics: A meta-analysis

description: Detailed dataset for "Elevated tropospheric ozone alters soil carbon and nitrogen dynamics: A meta-analysis."
DOI: 10.17632/z6rzywkrc4.1
title: Long-chain Alkyl Diols as Indicators of Local Riverine Input, Temperature, and Upwelling in a Shelf South of the Yangtze River Estuary in the East China Sea

description: The composition and distribution of long-chain alkyl diols and their indices for surface and core sediments from the inner shelf of the East China Sea.
DOI: 10.17632/ssgswmgm3j.1
title: Spatial_dependence_Zipf

description: Dataset for the paper "Spatial dependence in the rank-size distribution of cities"
DOI: 10.17632/thb8bsm4kp.1
title: Agroinfection of N.benthamiana
DOI: 10.7910/dvn/h9rhwn/4wikti
title: Data_httpsdoi.org10.7910DVNH9RHWN-1.tab

description: Version: 07-25-2020
DOI: 10.5517/ccdc.csd.cc25hpw8
title: CCDC 2011090: Experimental Crystal Structure Determination

description: Related Article: Xiaolan Tong, Shan Wang, HongXia Gao, Yingchong Ge, Jun Zuo, Fen Liu, Jianhua Ding, Jianbo Xiong|2020|CrystEngComm|22|5716|doi:10.1039/D0CE01091J
DOI: 10.5517/ccdc.csd.cc25hpx9
title: CCDC 2011091: Experimental Crystal Structure Determination

description: Related Article: Xiaolan Tong, Shan Wang, HongXia Gao, Yingchong Ge, Jun Zuo, Fen Liu, Jianhua Ding, Jianbo Xiong|2020|CrystEngComm|22|5716|doi:10.1039/D0CE01091J
DOI: 10.17632/54hms3rsb7.1
title: North Sea Deglaciation Simulation (Gandy et al., JGR)

description: Archived files for manuscript "Collapse of the Eurasian Ice Sheet in the North Sea modulated by combined processes of ice flow, surface melt, and marine ice sheet instabilities" by Gandy et al., in prep. Contents; &gt;Netcdf file for each NROY simulation &gt;An example inputs file to reproduce the experiments All experiments are not archived online to reduce the total filesize. To receive all the output files please contact Niall Gandy (earnga@leeds.ac.uk).
DOI: 10.17632/x4kfyfzyc6.1
title: Landmark data for "Evolution and diversification of delphinid skull shapes"

description: Landmark data for "Evolution and diversification of delphinid skull shapes", iScience 2020, https://doi.org/10.1016/j.isci.2020.101543
DOI: 10.6084/m9.figshare.12964712
title: GeneLab MG assembly-based example outputs and code

description: GeneLab MG assembly-based example outputs and code
DOI: 10.6084/m9.figshare.12964712.v2
title: GeneLab MG assembly-based example outputs and code

description: GeneLab MG assembly-based example outputs and code
DOI: 10.6084/m9.figshare.12964712.v1
title: GeneLab MG assembly-based example outputs and code

description: GeneLab MG assembly-based example outputs and code
DOI: 10.17632/fp9zr5htn8.1
title: Bitter Gourd Intervention (BIG) trial - Tanzania

description: Data of the study published under 'Bitter gourd reduces elevated fasting plasma glucose levels in an intervention study among prediabetics in Tanzania. Michael B. Krawinkel, Christine Ludwig, Mark E. Swai, Ray-yu Yang, Kwok Pan Chun, Sandra D. Habicht (https://doi.org/10.1016/j.jep.2018.01.016)
DOI: 10.17632/6bp5443vjp.1
title: indonesia

description: wilayah indonesia
DOI: 10.5281/zenodo.3942115
title: NSD_atlas_of_hypothalamic_region

description: <pre>This study describes a high-resolution in-vivo magnetic resonance imaging atlas of the human hypothalamic region. We employed a minimum deformation averaging (MDA) pipeline to produce a normalized (MNI152b), high-resolution template from multimodal (T1w and T2w) magnetic resonance imaging (MRI) datasets. 990 subjects derived from the HCP1200 data release were included in this study. This template was used to delineate hypothalamic (n=13) and extrahypothalamic (n=12) gray and white matter structures. The high-contrast, high-resolution MDA template images in 0.25 and 0.5 millimeter isotropic resolution: MDA_990HCP_t1_MNI152b_0.25.nii.gz MDA_990HCP_t1_MNI152b_0.5.nii.gz MDA_990HCP_t2_MNI152b_0.25.nii.gz MDA_990HCP_t2_MNI152b_0.5.nii.gz Files of the hypothalamic region atlas segmentation (tables (.csv) and images (nifti format)): -a table with the structure name, abbreviation and label number: Volumes_names-labels.csv -the full volume segmentation in 0.25 and 0.5 millimeter isotropic resolution: MDA_990HCP_atlas_labels_0.25mm.nii.gz MDA_990HCP_atlas_labels_0.5mm.nii.gz -an archive of binary images of each structure separately: MDA_990HCP_isolated_nuclei_0.25mm_resolution.zip -an archive of the three example clinical datasets containing the three labels delineating the volume of tissue activated (VTA) of the two DBS patients (example 1 Alzheimer patient with forniceal DBS; example 2 patient receiving DBS for morbid obesity) and the label delineating the metastasis of example 3. These labels are provided in MNI152b space for two reasons: 1) to allow for visualization of the label in relation to the hypothalamic atlas 2) to protect patient confidentiality example_labels_MNI152_template_space.zip A set of the final hypothalamic region atlas segmentation is also provided aligned to the MNI152 2009b template: -the full volume segmentation in 0.25 and 0.5 millimeter isotropic resolution: MNI152b_atlas_labels_0.25mm.nii.gz MNI152b_atlas_labels_0.5mm.nii.gz -an archive of binary images of each structure separately: MNI152b_isolated_nuclei_0.25mm_resolution.zip MNI152b_isolated_nuclei_0.5mm_resolution.zip Tables that describe the average structure volumes in the subjects used to generate the MDAs: Average_hypothalamic_volumes_by_Sex.csv Average_left_right_hemispheric_hypothalamic_volumes.csv Estimated_volumes_of_hypothalamus_proper_its_divisions_and_nuclei.csv Authors: Clemens Neudorfer, Jürgen Germann, Gavin J.B. Elias, Robert Gramer, Alexandre Boutet, Andres M. Lozano Affiliations: Division of Neurosurgery, Depatment of Surgery, Toronto Western Hospital, University of Toronto, Canada. </pre>
description: Neudorfer, C., Germann, J., Elias, G.J.B. et al. A high-resolution in vivo magnetic resonance imaging atlas of the human hypothalamic region. Sci Data 7, 305 (2020). https://doi.org/10.1038/s41597-020-00644-6
DOI: 10.5281/zenodo.3724191
title: NSD_atlas_of_hypothalamic_region

description: <pre>This study describes a high-resolution in-vivo magnetic resonance imaging atlas of the human hypothalamic region. We employed a minimum deformation averaging (MDA) pipeline to produce a normalized (MNI152b), high-resolution template from multimodal (T1w and T2w) magnetic resonance imaging (MRI) datasets. 990 subjects derived from the HCP1200 data release were included in this study. This template was used to delineate hypothalamic (n=13) and extrahypothalamic (n=12) gray and white matter structures. The high-contrast, high-resolution MDA template images in 0.25 and 0.5 millimeter isotropic resolution: MDA_990HCP_t1_MNI152b_0.25.nii.gz MDA_990HCP_t1_MNI152b_0.5.nii.gz MDA_990HCP_t2_MNI152b_0.25.nii.gz MDA_990HCP_t2_MNI152b_0.5.nii.gz Files of the hypothalamic region atlas segmentation (tables (.csv) and images (nifti format)): -a table with the structure name, abbreviation and label number: Volumes_names-labels.csv -the full volume segmentation in 0.25 and 0.5 millimeter isotropic resolution: MDA_990HCP_atlas_labels_0.25mm.nii.gz MDA_990HCP_atlas_labels_0.5mm.nii.gz -an archive of binary images of each structure separately: MDA_990HCP_isolated_nuclei_0.25mm_resolution.zip -an archive of the three example clinical datasets containing the three labels delineating the volume of tissue activated (VTA) of the two DBS patients (example 1 Alzheimer patient with forniceal DBS; example 2 patient receiving DBS for morbid obesity) and the label delineating the metastasis of example 3. These labels are provided in MNI152b space for two reasons: 1) to allow for visualization of the label in relation to the hypothalamic atlas 2) to protect patient confidentiality example_labels_MNI152_template_space.zip A set of the final hypothalamic region atlas segmentation is also provided aligned to the MNI152 2009b template: -the full volume segmentation in 0.25 and 0.5 millimeter isotropic resolution: MNI152b_atlas_labels_0.25mm.nii.gz MNI152b_atlas_labels_0.5mm.nii.gz -an archive of binary images of each structure separately: MNI152b_isolated_nuclei_0.25mm_resolution.zip MNI152b_isolated_nuclei_0.5mm_resolution.zip Tables that describe the average structure volumes in the subjects used to generate the MDAs: Average_hypothalamic_volumes_by_Sex.csv Average_left_right_hemispheric_hypothalamic_volumes.csv Estimated_volumes_of_hypothalamus_proper_its_divisions_and_nuclei.csv Authors: Clemens Neudorfer, Jürgen Germann, Gavin J.B. Elias, Robert Gramer, Alexandre Boutet, Andres M. Lozano Affiliations: Division of Neurosurgery, Depatment of Surgery, Toronto Western Hospital, University of Toronto, Canada. </pre>
description: Neudorfer, C., Germann, J., Elias, G.J.B. et al. A high-resolution in vivo magnetic resonance imaging atlas of the human hypothalamic region. Sci Data 7, 305 (2020). https://doi.org/10.1038/s41597-020-00644-6
DOI: 10.17632/vr29hx8cyk.1
title: Human Pluripotent Stem Cell-Derived Neural Cells and Brain Organoids Reveal SARS-CoV-2 Neurotropism. Jacob et al

description: SUPPLEMENTARY TABLES Table S1. List of primer sequences used for QPCR, related to Figures 2, S2, 4 and S4. Table S2. List of differentially expressed genes in choroid plexus organoids upon SARS-CoV-2 infection, related to Figure 4. Table S3. List of GO terms for differentially expressed genes in choroid plexus organoids upon SARS-CoV-2 infection, related to Figure 4.
DOI: 10.17632/tt7mfggc44.1
title: Les enseignant(e)s et éducateur(trice)s pendant le confinement (Martinique)

description: Bonjour, Trois chercheurs de l’INSPE de Martinique (Cédric Ramassamy, Pierre-Olivier Weiss et Maurizio Alì) ont souhaité comprendre dans quelles conditions les enseignant(e)set éducateurs/trices de la Martinique se trouvaient face à la mise en place des cours à distance suite au confinement. "Depuis le 16 mars 2020, vous n’allez plus dans votre établissement scolaire et vous travaillez à distance. Nous cherchons à comprendre dans quelles conditions vous vous trouvez face à cette situation sans précédent".
DOI: 10.17632/fphdj85vpz.1
title: Assessment of Lead (Pb) Leakage from Abandoned Mine Tailing Ponds to Klity Creek, Kanchanaburi Province, Thailand

description: Assessment of Lead (Pb) Leakage from Abandoned Mine Tailing Ponds to Klity Creek, Kanchanaburi Province, Thailand
DOI: 10.17632/r37swkcjfz.3
title: Attorney Discipline, the Quality of Legal Systems and Economic Growth within the United States

description: The American Bar Association’s annual Survey on Lawyer Discipline (SOLD) reports complaints and charges regarding lawyer misconduct, the caseload per disciplinary attorney, and each state’s budget for attorney discipline. From these reports, we develop five measures of attorney discipline: 1. COMPLAINTS – the percent of attorneys in the state who receive complaints from the public. 2. CHARGED – the percent of attorneys that are charged with some form of misconduct during the year; 3. CHARGED/ COMPLAINTS – the percent of the attorneys receiving COMPLAINTS that are eventually CHARGED with malpractice; 4. BUDGET (in dollars) – the state’s annual budget for implementing attorney discipline relative to the number of attorneys; and 5. CASELOAD – the number of AD cases per state disciplinary attorney per year. In our study "ATTORNEY DISCIPLINE, THE QUALITY OF LEGAL SYSTEMS AND ECONOMIC GROWTH WITHIN THE UNITED STATES" we use these measures to examine the quality of legal systems within the United States and the relation between this quality and state economic growth. The panel data set, included here, contains the values of the 5 attorney discipline measures for each state from 2000-2017. We use these data in our study.