cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.lrzh3j
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "HasCoordinate is true",
 "TaxonKey is Osmoderma eremita (Scopoli, 1763)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013736-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6jhnz
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scolecenchelys macroptera (Bleeker, 1857)"
 ]
}

 The dataset includes 409 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035671-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i7d6my
title: Occurrence Download

description: A dataset containing 2904 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Balanus amphitrite Darwin, 1854",
 "TaxonKey is Balanus eburneus Gould, 1841",
 "TaxonKey is Balanus improvisus Darwin, 1854",
 "TaxonKey is Balanus glandula Darwin, 1854",
 "TaxonKey is Balanus trigonus Darwin, 1854"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2904 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011458-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjgeyo
title: Occurrence Download

description: A dataset containing 21309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.45435 7.1881,-74.47632 6.44632,-73.927 6.03131,-73.4436 6.62096,-73.79517 7.34067,-74.45435 7.1881))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21309 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013737-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fscn0p
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus lutzae Mertens, 1938"
 ]
}

 The dataset includes 88 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011458-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svbk85
title: Occurrence Download

description: A dataset containing 1438 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Loxodonta africana (Blumenbach, 1797)"
 ]
}

 The dataset includes 1438 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117027-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oeii2z
title: Occurrence Download

description: A dataset containing 10749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Year 1988-2018",
 "Geometry POLYGON((-180 60,180 60,180 90,-180 90,-180 60))",
 "TaxonKey is Linyphiidae"
 ]
}

 The dataset includes 10749 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013737-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gtbsnz
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Système d'Information sur la Nature et les Paysages d'Ile de France - Coordination NATURA 2000 zps Bassée Villefermoy"
 ]
}

 The dataset includes 366 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022912-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ohbt1i
title: Occurrence Download

description: A dataset listing the 5373 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hebridae"
 ]
}

 The dataset's 5373 records were derived from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011459-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjasr9
title: Occurrence Download

description: A dataset containing 191889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gossypium turneri Fryxell, Abies koreana E.H.Wilson, Habenaria pantlingiana Kraenzl., Goodyera fumata Thwaites, Cypripedium formosanum Hayata, Pinus thunbergii Parl., Masdevallia picturata Rchb.f., Paphiopedilum niveum (Rchb.f.) Stein, Iochroma nitidum S.Leiva & Quip., Dunalia obovata (Ruiz & Pav.) Dammer, Cattleya crispa Lindl., Iochroma loxense (Kunth) Miers, Salix purpurea L., Saracha punctata Ruiz & Pav., Tiedemannia filiformis (Walter) Feist & S.R.Downie, Anthriscus cerefolium (L.) Hoffm., Arundinaria tecta (Walter) Muhl., Premna microphylla Turcz., Bowenia serrulata (W.Bull) Chamb., Trifolium strictum L., Orthotrichum rogeri Brid., Campanula punctata Lam., Trifolium boissieri Guss., Koliella longiseta (Vischer) Hindák, Rhazya stricta Decne., Apios americana Medik., Artemisia montana (Nakai) Pamp., Clematis fusca Turcz., Hesperelaea palmeri A.Gray, Trifolium glanduliferum Boiss., Utricularia macrorhiza Le Conte, Spirodela polyrhiza (L.) Schleid., Mankyua chejuensis B.Y.Sun, M.H.Kim & C.H.Kim, Triticum monococcum L., Sapindus mukorossi Gaertn., Microthamnion kuetzingianum Nägeli, Pabia signiensis Friedl & O'Kelly, Genlisea margaretae Hutch., Stichococcus bacillaris Nägeli, Paradoxia multiseta Svirenko, Botryococcus braunii Kütz., 1849, Sanionia uncinata (Hedw.) Loeske, Luzuriaga radicans Ruiz & Pav., Orobanche crenata Forssk., Magnolia yunnanensis (Hu) Noot., Calanthe triplicata (Willemet) Ames, Primula poissonii Franch., Nymphaea mexicana Zucc., Camellia crapnelliana Tutcher, Trifolium meduseum C.I.Blanche ex Boiss.)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 191889 records from 737 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013737-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.keukak
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Programme Cybelle Méditerranée - Cybelle Méditerranée. Observation nautique ponctuelle"
 ]
}

 The dataset includes 613 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022915-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbhviy
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus occipitalis Boulenger, 1885"
 ]
}

 The dataset includes 25 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011460-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25189211.v1
title: Effects of rooftop solar on household energy burden in the United States

description: The excel file provides the data that were used to create all main figures. Each tab contains the data of each respective figure.
DOI: 10.15468/dl.c9lwls
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Astragalus purshii var. lagopinus (Rydb.) Barneby",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 80 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013737-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d1fwrv
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Peltophryne lemur Cope, 1869"
 ]
}

 The dataset includes 183 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047299-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29tr00
title: Occurrence Download

description: A dataset containing 20415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Costa Rica",
 {
 "or" : [
 "TypeStatus is Unspecified type",
 "TypeStatus is Holotype",
 "TypeStatus is Isolectotype",
 "TypeStatus is Isoneotype",
 "TypeStatus is Isotype",
 "TypeStatus is Lectotype",
 "TypeStatus is Neotype"
 ]
 }
 ]
}

 The dataset includes 20415 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011460-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vlnlei
title: Occurrence Download

description: A dataset containing 90381 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clupea harengus Linnaeus, 1758"
 ]
}

 The dataset includes 90381 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013738-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/5c32f0b9169742e6
title: Custom collection of categorize, classification, drizzle, droplet effective radius, ice effective radius, and 6 other products from Cabauw on 22 Jun 2021
DOI: 10.15468/dl.a4k2dc
title: Occurrence Download

description: A dataset containing 74358 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cetonia aurata (Linnaeus, 1758)"
 ]
}

 The dataset includes 74358 records from 1279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023383-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8textr
title: Occurrence Download

description: A dataset containing 6166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gagea bohemica (Zauschn.) Schult. & Schult.f.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 6166 records from 188 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023384-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3shkg
title: Occurrence Download

description: A dataset containing 142489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Popillia japonica Newman, 1838"
 ]
}

 The dataset includes 142489 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023346-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.hfc87e
title: Maxent modelling reveals suitable habitat remains unchanged for Carcinus maenas in Australia

description: Summary of datasets used in [study](https://doi.org/10.1080/14486563.2024.2409747)
DOI: 10.5281/zenodo.13898422
title: Spatially resolved single-cell atlas unveils a distinct cellular signature of fatal lung COVID-19 in a Malawian population

description: This record contains all the fully processed single cell RNA sequencing objects included in the paper Nyirenda et al (2024) 'Spatially resolved single-cell atlas unveils a distinct cellular signature of fatal lung COVID-19 in a Malawian population'. 

Abstract

Postmortem single-cell studies have transformed understanding of lower respiratory tract diseases (LRTD) including Covid19, but there is minimal data from African settings where HIV, malaria and other environmental exposures may affect disease pathobiology and treatment targets. We used histology and high-dimensional imaging to characterise fatal lung disease in Malawian adults with (n=9) and without (n=7) Covid19, and generated single-cell transcriptomics data from lung, blood and nasal cells. Data integration with other  cohorts showed a conserved Covid19 histopathological signature, driven by contrasting immune and inflammatory mechanisms:  in USA, European and Asian cohorts by type I/III interferon responses, particularly in blood-derived monocytes, in the Malawi cohort, by response to interferon-gamma (IFN-γ) in lung-resident macrophages. HIV status had minimal impact on histology or immunopathology. Our study provides a data resource and highlights the importance of studying the cellular mechanisms of disease in underrepresented populations, indicating shared and distinct targets for treatment. 

Figure 3

COSMIC_Lung_Atlas.h5ad

COSMIC_Lung_Stromal_Atlas.h5ad

COSMIC_Lung_Immune_Atlas.h5ad

Figure 4

COSMIC_HCLA_Integration.rds

Figure 5

COSMIC_Nasal_Atlas.h5ad

COSMIC_Blood_Atlas.h5ad

Total Post-mortem COVID-19 Lung Autopsy Papers Integration

This data object was generated whereby all publicly available fatal COVID-19 lung single cell cohorts were integrated together. We include this analysis to show that the observed interferon responses detailed in the paper are preserved in not only the HLCA, but also existing post-mortem lung cohorts. The codebase for this additional analysis can be found here: https://github.com/olympiahardy/Malawi_Integration 

COSMIC_Delorey_Melms_Integration.rds

 

 

Imaging Mass Cytometry Analysis

This Zenodo record can be accessed using the DOI here: 10.5281/zenodo.13899297 . The GitHub repository can be accessed here: https://github.com/joaolsf/Spatial_Single_Cell_Lung_Atlas_Malawi_COVID
DOI: 10.5281/zenodo.13898423
title: Spatially resolved single-cell atlas unveils a distinct cellular signature of fatal lung COVID-19 in a Malawian population

description: This record contains all the fully processed single cell RNA sequencing objects included in the paper Nyirenda et al (2024) 'Spatially resolved single-cell atlas unveils a distinct cellular signature of fatal lung COVID-19 in a Malawian population'. 

Abstract

Postmortem single-cell studies have transformed understanding of lower respiratory tract diseases (LRTD) including Covid19, but there is minimal data from African settings where HIV, malaria and other environmental exposures may affect disease pathobiology and treatment targets. We used histology and high-dimensional imaging to characterise fatal lung disease in Malawian adults with (n=9) and without (n=7) Covid19, and generated single-cell transcriptomics data from lung, blood and nasal cells. Data integration with other  cohorts showed a conserved Covid19 histopathological signature, driven by contrasting immune and inflammatory mechanisms:  in USA, European and Asian cohorts by type I/III interferon responses, particularly in blood-derived monocytes, in the Malawi cohort, by response to interferon-gamma (IFN-γ) in lung-resident macrophages. HIV status had minimal impact on histology or immunopathology. Our study provides a data resource and highlights the importance of studying the cellular mechanisms of disease in underrepresented populations, indicating shared and distinct targets for treatment. 

Figure 3

COSMIC_Lung_Atlas.h5ad

COSMIC_Lung_Stromal_Atlas.h5ad

COSMIC_Lung_Immune_Atlas.h5ad

Figure 4

COSMIC_HCLA_Integration.rds

Figure 5

COSMIC_Nasal_Atlas.h5ad

COSMIC_Blood_Atlas.h5ad

Total Post-mortem COVID-19 Lung Autopsy Papers Integration

This data object was generated whereby all publicly available fatal COVID-19 lung single cell cohorts were integrated together. We include this analysis to show that the observed interferon responses detailed in the paper are preserved in not only the HLCA, but also existing post-mortem lung cohorts. The codebase for this additional analysis can be found here: https://github.com/olympiahardy/Malawi_Integration 

COSMIC_Delorey_Melms_Integration.rds

 

 

Imaging Mass Cytometry Analysis

This Zenodo record can be accessed using the DOI here: 10.5281/zenodo.13899297 . The GitHub repository can be accessed here: https://github.com/joaolsf/Spatial_Single_Cell_Lung_Atlas_Malawi_COVID
DOI: 10.15468/dl.9k8agp
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heliotropium suaveolens M.Bieb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 100 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023386-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpc3aq
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hellenocarum multiflorum (Sm.) H.Wolff)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023387-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qjztw
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Machine Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco peregrinus Tunstall, 1771"
 ]
}

 The dataset includes 153 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023388-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kz5rb
title: Occurrence Download

description: A dataset containing 527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aquila nipalensis Hodgson, 1833, Aquila nipalensis orientalis Cabanis, 1854, Aquila nipalensis nipalensis)"
 ]
}

 The dataset includes 527 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023389-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55suyr
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Quiscalus palustris (Swainson, 1827)"
 ]
}

 The dataset includes 39 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158034-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-225578
title: The Word of Truth, 1995, vol. 6, no. 2 = Cuvantul Adevarului, 1995, anul VI, nr 2

description: [description english/roman)] The Word of Truth is the periodical, official publication of the Romanian Pentecostal Church beginning from 1990 to present.
DOI: 10.15468/dl.84kfrr
title: Occurrence Download

description: A dataset containing 254 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Nototriche longirostris (Wedd.) A.W.Hill, Rhipidoglossum eggelingii (Summerh.) Farminhão & Stévart, Limonium kaschgaricum (Rupr.) Ikonn.-Gal., Pearsonia flava subsp. mitwabaensis (Timp.) Polhill, Calea caleoides (DC.) H.Rob.)"
 ]
}

 The dataset includes 254 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064198-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mx7kwq
title: Occurrence Download

description: A dataset containing 11895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Dicrurus remifer",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 11895 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069880-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-225546
title: The Word of Truth, 1995, vol. 6, no. 1 = Cuvantul Adevarului, 1995, anul VI, nr 1

description: [description english/roman)] The Word of Truth is the periodical, official publication of the Romanian Pentecostal Church beginning from 1990 to present.
DOI: 10.15468/dl.nzps3u
title: Occurrence Download

description: A dataset containing 4083409 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Thailand"
 ]
}

 The dataset includes 4083409 records from 1861 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031997-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd7ryj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thynnus tonggol Bleeker, 1851",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000510-250213122211068/datasets/export for details.