cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tbtn4t
title: Occurrence Download

description: A dataset containing 19018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aegilops geniculata",
 "Year 1961-2026"
 ]
}

 The dataset includes 19018 records from 304 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001668-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fm22724
title: Data from: Effects of manipulated levels of predation threat on parental provisioning and nestling begging

description: Parental provisioning behavior is a major determinant of offspring growth
 and survival, but high provisioning rates might come at the cost of
 increased predation threat. Parents should thus adjust provisioning
 activity according to current predation threat levels. Moreover,
 life-history theory predicts that response to predation threat should be
 correlated with investment in current reproduction. We experimentally
 manipulated perceived predation threat in free-living great tits (Parus
 major) by presenting parents with a nest predator model while monitoring
 different aspects of provisioning behavior and nestling begging.
 Experiments were conducted in two years differing greatly in ecological
 conditions, including food availability. We further quantified male
 territorial aggressiveness and male and female exploratory tendency.
 Parents adjusted provisioning according to current levels of threat in an
 apparently adaptive way. They delayed nest visits during periods of
 elevated perceived predation threat and subsequently compensating for lost
 feeding opportunities by increasing provisioning once the immediate threat
 had diminished. Nestling begging increased after elevated levels of
 predation threat, but returned to baseline levels by the end of the
 experiment, suggesting that parents had fully compensated for lost feeding
 opportunities. There was no evidence for a link between male exploration
 behavior or aggressiveness and provisioning behavior. In contrast,
 fast-exploring females provisioned at higher rates, but only in the year
 with poor environmental conditions, which might indicate a greater
 willingness to invest in current reproduction in general. Future work
 should assess whether these personality-related differences in delivery
 rates under harsher conditions came at a cost of reduced residual
 reproductive value.
description: Feeding
 latencyThis file contains the
 data used for the analyses on the effect of treatment on feeding
 latency.ProvisioningThis file contains the data used for the analyses on the effect of treatment on visit-level provisioning data (i.e. ivi, load size, short-term delivery and prey type) and the effect of exploration behavior and aggressiveness on short-term delivery.Long-term deliveryThis file contains the data used for the analyses on the effect of treatment on long-term delivery.Standardized begging and long-term deliveryThis file contains the data used for figure 4. Values of begging and long-term delivery (from “Long-term delivery.xlsx”) were standardized to a mean of zero and standard deviation of 1 within year and then averaged per treatment and year.Short-term delivery per treatmentThis file contains the data used for figure 5. In this file short-term delivery is averaged per treatment and individual.READMEThis file describes the data files accompanying the publication.
DOI: 10.5061/dryad.9qb0dt6
title: Data from: Exposure to males, but not receipt of sex peptide, accelerates functional aging in female fruit flies

description: Increased exposure to males can affect females negatively, reducing female
 lifespan and fitness. These costs could derive from increased mating rate
 and also harassment by males. Additionally, early investment in
 reproduction can increase the onset or rate of senescence in reproductive
 traits. Hence, there is a tight link between reproduction and aging. Here,
 we assess how mating and encounter rate with males impacts declines in
 female functional traits that are not directly involved in reproduction.
 In Drosophila melanogaster fruit flies, exposure to males and mating
 reduces female lifespan through harassment and receipt of seminal
 proteins, including sex peptide. We manipulated the intensity of female
 exposure to males and regularly assessed female stress responses and
 recorded physiological traits over her lifetime. Both mating itself and
 increased exposure to males accelerates declines in female climbing
 ability and starvation resistance. However, this is not related to changes
 in female body mass or fat storage. Moreover, these declines are not
 driven by the receipt of sex peptide. Our results suggest some synchrony
 in senescence across traits in response to female exposure to males,
 however this is not universal, as we did not find this for physiological
 traits. Synchrony in senescence has been theorised but little supported in
 the literature. It is clear that aging is a multifaceted trait; to
 understand environmental impacts on aging rates we must measure more than
 lifespan, and indeed measure senescence in multiple traits. Specifically,
 our work shows that we must identify which female traits are sensitive to
 elevated mating activity to understand the impact of antagonistic
 interactions between the sexes on female aging patterns.
description: Bretman and Fricke FE
 data_DryadA key to the five
 individual datasheets combined in this data file can be found at the
 start. A short description of the variables and factors for each datasheet
 is provided. In addition the method section refers back to where the
 description of the methods used to generated the data can be found in the
 original article. We also refer back to the figures in the article that
 were generated with these data. On the individual datasheets we provide an
 explanation for the different headers and the data encoded/ presented by
 each dataset.
DOI: 10.5061/dryad.jt0r643
title: Data from: Joint evolution of asexuality and queen number in an ant

description: Ants exhibit a striking diversity of reproductive systems, varying in
 traits such as the number of reproductives per colony [1], the mode of
 daughter production (sexual or asexual) [2], and the mode of caste
 determination (genetic or environmental) [3]. Species employing mixed
 reproductive systems present a unique opportunity to explore the causes
 and consequences of alternative breeding strategies. Mixed reproductive
 systems in ants include social polymorphism in colony queen number,
 whereby single-queen (monogyne) and multiple-queen (polygyne) colonies
 co-occur within species [4, 5, 6, 7], and facultative asexuality, in which
 female offspring may be produced sexually or asexually within colonies [8,
 9, 10, 11, 12, 13]. Here, we document a remarkable confluence of multiple
 mixed reproductive systems in the tropical fire ant, Solenopsis geminata,
 in a population with three important features: (1) polygyne colonies
 produce workers sexually but queens asexually, whereas monogyne colonies
 produce both castes sexually; (2) polygyne queens mate with monogyne males
 to produce workers, but monogyne queens do not mate with polygyne males;
 and (3) different asexual/polygyne lineages evidently were founded
 separately by genetically distinct founder queens, which appear to have
 originated from the same neighboring monogyne population. Multiple
 asexual/polygyne genomes are transmitted undiluted in this system, but
 sterile workers produced with sperm from a sexually-reproducing/monogyne
 population are necessary for the persistence of these lineages. The
 intersection of social polymorphism, facultative asexuality, and genetic
 caste determination marks this population of S. geminata as an embodiment
 of the diversity of ant reproductive systems and suggests previously
 unknown connections between these phenomena.
description: Project
 MetadataIncludes project sample
 sizes and descriptions of microsatellite loci (diversity statistics and
 primer sequences).Lacy_etal_2019_DataS1.xlsxMicrosatellite Data – Nine Primary LociMultilocus genotypes of all sampled S. geminata individuals at the nine primary microsatellite loci.Lacy_etal_2019_TableS1.xlsxMicrosatellite Data – 26 Additional LociMultilocus genotypes of S. geminata individuals at the 26 additional microsatellite loci.Lacy_etal_2019_TableS2.xlsxmtDNA COI sequencesHaplotypes observed at the mitochondrial gene COI in monogyne and polygyne S. geminata.Lacy_etal_2019_COI_sequences.fastaMale Reproductive Development ScoresReproductive development scores and inferred ploidy of monogyne and polygyne S. geminata males.Lacy_etal_2019_MaleReproductiveDevelopmentScores.txt
DOI: 10.5061/dryad.dq444fr
title: Data from: Speciation with gene flow: evidence from a complex of alpine butterflies (Coenonympha, Satyridae)

description: Until complete reproductive isolation is achieved, the extent of
 differentiation between two diverging lineages is the result of a dynamic
 equilibrium between genetic isolation and mixing. This is especially true
 for hybrid taxa, for which the degree of isolation in regard to their
 parental species is decisive in their capacity to rise as a new and stable
 entity. In this work, we explored the past and current patterns of
 hybridization and divergence within a complex of closely related
 butterflies in the genus Coenonympha in which two alpine species, C.
 darwiniana and C. macromma, have been shown to result from hybridization
 between the also alpine C. gardetta and the lowland C. arcania. By testing
 alternative scenarios of divergence among species, we show that gene flow
 has been uninterrupted throughout the speciation process, although leading
 to different degrees of current genetic isolation between species in
 contact zones depending on the pair considered. Nonetheless, at broader
 geographic scale, analyses reveal a clear genetic differentiation between
 hybrid lineages and their parental species, pointing out to an advanced
 stage of the hybrid speciation process. Finally, the positive correlation
 observed between ecological divergence and genetic isolation among these
 butterflies suggests a potential role for ecological drivers during their
 speciation processes.
description: Genetic_dataset_CoenonymphaFile with the individuals names and genotypes for the 1,047 SNPs used for the analyses.
DOI: 10.17632/7jhycpbdpw.3
title: MirathQA: An Arabic Dataset for Islamic Inheritance Reasoning

description: The repository contains three processed files (train, val, and test) and (Mirath Dataset_final) the raw dataset, which includes the original collected cases used to generate the multiple-choice questions (MCQs). The scripts folder contains all the scripts that can be used to reproduce the dataset.
DOI: 10.5061/dryad.1ck03q4
title: Data from: Prior selfing can mitigate the negative effects of mutual reproductive interference between coexisting congeners

description: When more than one closely related plant species share the same
 pollination niche, reproductive interference (RI) via interspecific pollen
 transfer should limit their coexistence. However, some studies have
 reported the sympatric coexistence of two native close-relatives
 pollinated by the same pollinators under RI without niche partitioning. To
 clarify the mechanisms promoting the coexistence of species sharing
 pollinators, we examined the frequency dependency of RI in natural
 conditions and the potential roles of autonomous selfing in mitigating the
 negative RI effects between congeneric species. We investigated
 sympatrically growing Commelina communis (Cc) and C. c. f. ciliata (Ccfc)
 populations. These species exhibit very large overlaps in habitat
 preference and pollination niche, but seldom produce hybrids. First, we
 conducted a hand-pollination experiment to examine the negative effects of
 heterospecific pollen deposition (HPD) on seed production and the
 potential of self-pollination to mitigate the effects. We then examined
 the RI effects on reproductive success and the potential for autonomous
 selfing in the field. We found significant negative HPD effects on seed
 production and the mitigation effects of prior and competing
 self-pollination, in both Cc and Ccfc. For both species in the field,
 intraspecific pollinator movements and reproductive success significantly
 decreased with an increase in the relative floral abundance of competing
 species, although the negative RI effect on reproductive success was lower
 in Cc than in Ccfc. This could be explained by the greater potential for
 prior autonomous selfing in Cc than in Ccfc. Our findings suggest that Cc
 flowers were less affected by RI from competing species, which was likely
 due to a higher prior selfing ability compared to Ccfc flowers. The slight
 asymmetry in RI may explain the Cc-biased distribution in the study area.
 The study improves our understanding that prior autonomous selfing could
 reduce the negative RI effect from competing species and assure
 reproduction in mixed-mating species with frequent pollinator visitations.
description: Katsuhara_and_Ushimaru_data_for_FuncEcolAll data archived here were used for GLMM analyses in Katsuhara and Ushimaru. "Prior selfing can mitigate the negative effects of mutual reproductive interference between coexisting congeners. Data is in six worksheets.
DOI: 10.5061/dryad.45482t5
title: Data from: Genetic changes caused by restocking and hydroelectric dams in demographically bottlenecked brown trout in a transnational subarctic riverine system

description: Habitat discontinuity, anthropogenic disturbance, and overharvesting have
 led to population fragmentation and declines worldwide. Preservation of
 remaining natural genetic diversity is crucial to avoid continued genetic
 erosion. Brown trout (Salmo trutta L.) is an ideal model species for
 studying anthropogenic influences on genetic integrity, as it has
 experienced significant genetic alterations throughout its natural
 distribution range due to habitat fragmentation, overexploitation,
 translocations, and stocking. The Pasvik River is a subarctic riverine
 system shared between Norway, Russia and Finland, subdivided by seven
 hydroelectric power dams that destroyed about 70% of natural spawning and
 nursing areas. Stocking is applied in certain river parts to support the
 natural brown trout population. Adjacent river segments with different
 management strategies (stocked versus not stocked) facilitated the
 simultaneous assessment of genetic impacts of dams and stocking based on
 analyses of 16 short tandem repeat loci. Dams were expected to increase
 genetic differentiation between and reduce genetic diversity within river
 sections. Contrastingly, stocking was predicted to promote genetic
 homogenization and diversity, but also potentially lead to loss of private
 alleles and to genetic erosion. Our results showed comparatively low
 heterozygosity and clear genetic differentiation between adjacent sections
 in non-stocked river parts, indicating that dams prevent migration and
 contribute to genetic isolation and loss of genetic diversity.
 Furthermore, genetic differentiation was low and heterozygosity relatively
 high across stocked sections. However, in stocked river sections, we found
 signatures of recent bottlenecks and reductions in private alleles,
 indicating that only a subset of individuals contribute to reproduction,
 potentially leading to divergence away from the natural genetic state.
 Taken together, these results indicate that stocking counteracts the
 negative fragmentation effects of dams, but also that stocking practices
 should be planned carefully in order to ensure long-term preservation of
 natural genetic diversity and integrity in brown trout and other species
 in regulated river systems.
description: Short tandem repeat
 (STR) data set for: Genetic changes caused by restocking and hydroelectric
 dams in demographically bottlenecked brown trout in a transnational
 subarctic riverine systemThis is a the short
 tandem repeat (STR) data set for the article: Genetic changes caused by
 restocking and hydroelectric dams in demographically bottlenecked brown
 trout in a transnational subarctic riverine systemTrout_2019-04-01_Dryad.xlsx
DOI: 10.5061/dryad.fg8kq66
title: Data from: Species-specific responses to habitat conversion across scales synergistically restructure Neotropical bird communities

description: Ecologists are increasingly exploring methods for preserving biodiversity
 in agricultural landscapes. Yet because species vary in how they respond
 to habitat conversion, ecological communities in agriculture and more
 natural habitats are often distinct. Unpacking the heterogeneity in
 species responses to habitat conversion will be essential for predicting
 and mitigating community shifts. Here, we analyze two years of bird
 censuses at 150 sites across gradients of local land cover, landscape
 forest amount and configuration, and regional precipitation in Costa Rica
 to holistically characterize species responses to habitat conversion.
 Specifically, we used Poisson-binomial mixture models to (1) delineate
 groups of species that respond similarly to environmental gradients, (2)
 explore the relative importance of local versus landscape-level habitat
 conversion, and (3) determine how landscape context influences species’
 local habitat preferences. We found that species fell into six groups:
 habitat generalists, abundant and rare forest specialists, and three
 groups of agricultural specialists that differed in their responses to
 landscape forest cover, fragmentation, and regional precipitation. Birds
 were most sensitive to local forest cover, but responses were contingent
 on landscape context. Specifically, forest specialists benefitted most
 when local forest cover increased in forested landscapes, while habitat
 generalists exhibited compensatory dynamics, peaking at sites with either
 local or landscape-level forest, but not both. Our study demonstrates that
 species responses to habitat conversion are complex but predictable.
 Characterizing species-level responses to environmental gradients
 represents a viable approach for forecasting the winners and losers of
 global change and designing interventions to minimize the ongoing
 restructuring of Earth’s biota.
description: community-dataBird community data from 2016 and 2017 across Guanacasteedge-dataEdge perimeter around 150 point count locations with varying buffer sizes from 50m to 1500m.forestcover-dataAmount of tree cover around 150 point count locations with varying buffer sizes from 50m to 1500m.precip-dataPrecipitation data and site coordinates for 150 point count localities.visit-dataData on conditions during site visits when bird detections were made that might influence detection probability.readmeA description of data columns in all other files.
DOI: 10.5061/dryad.11kf1ck
title: Data from: Suppression of bacteriocin resistance using live, heterospecific competitors

description: Rapidly spreading antibiotic resistance has led to the need for novel
 alternatives and sustainable strategies for antimicrobial use.
 Bacteriocins are a class of proteinaceous anticompetitor toxins under
 consideration as novel therapeutic agents. However, bacteriocins, like
 other antimicrobial agents, are susceptible to resistance evolution, and
 will require the development of sustainable strategies to prevent or
 decelerate the evolution of resistance. Here we conduct proof-of-concept
 experiments to test whether introducing a live, heterospecific competitor
 along with a bacteriocin dose can effectively suppress the emergence of
 bacteriocin resistance in vitro. Previous work with conventional
 chemotherapeutic agents suggests that competition between conspecific
 sensitive and resistant pathogenic cells can effectively suppress the
 emergence of resistance in pathogenic populations. However, the threshold
 of sensitive cells required for such competitive suppression of resistance
 may often be too high to maintain host health. Therefore, here we aim to
 ask whether the principle of competitive suppression can be effective if a
 heterospecific competitor is used. Our results show that a live competitor
 introduced in conjunction with low bacteriocin dose can effectively
 control resistance and suppress sensitive cells. Further, this efficacy
 can be matched by using a bacteriocin-producing competitor without any
 additional bacteriocin. These results provide strong proof-of-concept for
 the effectiveness of competitive suppression using live, heterospecific
 competitors. Currently in-use probiotic strains or commensals may provide
 promising candidates for the therapeutic use of bacteriocin-mediated
 competitive suppression.
description: Figure 1 Data and
 codeFigure 2 + 3 Raw
 DataFigure 2+3 SAS
 codeFigure 4 Data and
 CodeCostOfResistance
 Analyses
DOI: 10.5061/dryad.f3h26j3
title: Data from: Electrolyte imbalances in an unselected population in an emergency department: a retrospective cohort study

description: Background: Although electrolyte imbalances (EIs) are common in the
 emergency department (ED), few studies have examined the occurrence of
 such conditions in an unselected population. Objectives: To investigate
 the frequency of EI among adult patients who present to the ED, with
 regards to type and severity, and the association with age and sex of the
 patient, hospital length of stay (LOS), readmission, and mortality.
 Methods: A retrospective cohort study. All patients ≥18 years referred for
 any reason to the ED between January 1, 2010, and December 31, 2015, who
 had measured blood electrolytes were included. In total, 62 991 visits
 involving 31 966 patients were registered. Results: EIs were mostly mild,
 and the most common EI was hyponatremia (glucose-corrected) (24.6%).
 Patients with increasing severity of EI had longer LOS compared with
 patients with normal electrolyte measurements. Among all admitted
 patients, there were 12928 (20.5%) readmissions within 30 days from
 discharge during the study period. Hyponatremia (glucose-corrected) was
 associated with readmission, with an adjusted odds ratio (OR) of 1.25 (95%
 CI, 1.18–1.32). Hypomagnesemia and hypocalcemia (albumin-corrected) were
 also associated with readmission, with ORs of 1.25 (95% CI, 1.07–1.45) and
 1.22 (95% CI, 1.02–1.46), respectively. Dysnatremia, dyskalemia,
 hypercalcemia, hypermagnesemia, and hyperphosphatemia were associated with
 increased in-hospital mortality, whereas all EIs except hypophosphatemia
 were associated with increased 30-day and 1-year mortality. Conclusions:
 EIs were common and increasing severity of EIs was associated with longer
 LOS and increased in-hospital, 30-days and 1-year mortality. EI monitoring
 is crucial for newly admitted patients, and up-to-date training in EI
 diagnosis and treatment is essential for ED physicians.
description: Electrolyte imbalances
 in an ED-datafile-Tazmini-032019Datafile for the article
 as Excelfile. The varibles are described in the README
 file.Electrolyte imbalaces in an
 ED-readmefile.txt