cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3665746_d3.v1
title: Additional file 1: of Comprehensive CircRNA expression profile and selection of key CircRNAs during priming phase of rat liver regeneration

description: The results of annotating circRNA host linear transcripts and analysing differentially expressed circRNAs at 2 h and 6 h after PH compared with CG. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3665746_d3
title: Additional file 1: of Comprehensive CircRNA expression profile and selection of key CircRNAs during priming phase of rat liver regeneration

description: The results of annotating circRNA host linear transcripts and analysing differentially expressed circRNAs at 2 h and 6 h after PH compared with CG. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3665737_d12
title: Additional file 8: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets differentially expressed in MCF-7/Twist lung metastases. Probe sets are ranked by fold change. (XLSX 734Â kb)
DOI: 10.6084/m9.figshare.c.3665767_d7.v1
title: Additional file 3: Table S2. of Delta-like 4/Notch signaling promotes Apc
                     
                        Min/+ tumor initiation through angiogenic and non-angiogenic related mechanisms

description: Summary of sites of Notch pathway protein expression in the normal small and large intestine. Dll1, 3 and 4 Jagged1 and 2, Notch1-4, Hes1 and 5 protein expression pattern (indicated by an x) in the small intestine crypts and villus epithelium, in the bottom and top of the large intestine crypts and in the lamina propria of the normal WT intestine of C57BL/6 mice at 18 weeks of age. One experiment with n = 2 per group, 3 slides per mouse, and 2 sections per slide. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3665767_d7
title: Additional file 3: Table S2. of Delta-like 4/Notch signaling promotes Apc
                     
                        Min/+ tumor initiation through angiogenic and non-angiogenic related mechanisms

description: Summary of sites of Notch pathway protein expression in the normal small and large intestine. Dll1, 3 and 4 Jagged1 and 2, Notch1-4, Hes1 and 5 protein expression pattern (indicated by an x) in the small intestine crypts and villus epithelium, in the bottom and top of the large intestine crypts and in the lamina propria of the normal WT intestine of C57BL/6 mice at 18 weeks of age. One experiment with n = 2 per group, 3 slides per mouse, and 2 sections per slide. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3665737_d13.v1
title: Additional file 6: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets most differentially expressed in MCF-7/Twist primary tumors. Probe sets are ranked by fold change. (XLSX 601Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d13
title: Additional file 6: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets most differentially expressed in MCF-7/Twist primary tumors. Probe sets are ranked by fold change. (XLSX 601Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d14.v1
title: Additional file 4: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets most differentially expressed in MCF-7/Twist cells. Probe sets are ranked by fold change. (XLSX 461Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d14
title: Additional file 4: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets most differentially expressed in MCF-7/Twist cells. Probe sets are ranked by fold change. (XLSX 461Â kb)
DOI: 10.6084/m9.figshare.c.3665794_d1.v1
title: Additional file 1: Table S1. of Evidence of multiple insecticide resistance mechanisms in Anopheles gambiae populations in Bangui, Central African Republic

description: Number of Anopheles (%) tested by bioassays in seven sites of Bangui, Central African Republic by using WHO test kits for adult mosquitoes. Six insecticides of technical grade were used, including two pyrethroids (deltamethrin and lambda-cyhalothrin), one carbamate (bendiocarb), two organophosphates (fenitrothion and malathion) and one organochlorine (DDT). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3665794_d1
title: Additional file 1: Table S1. of Evidence of multiple insecticide resistance mechanisms in Anopheles gambiae populations in Bangui, Central African Republic

description: Number of Anopheles (%) tested by bioassays in seven sites of Bangui, Central African Republic by using WHO test kits for adult mosquitoes. Six insecticides of technical grade were used, including two pyrethroids (deltamethrin and lambda-cyhalothrin), one carbamate (bendiocarb), two organophosphates (fenitrothion and malathion) and one organochlorine (DDT). (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3665833_d7
title: Additional file 1: of Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

description: Pearsonâ  s correlation among traits measured with thermal stress application at seedling stage. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3665866_d3.v1
title: MOESM3 of Taxonomy of Cyrtochilum-alliance (Orchidaceae) in the light of molecular and morphological data

description: Additional file 3: Appendix S3. GenBank accession numbers for analysed sequences.
DOI: 10.6084/m9.figshare.c.3665866_d3
title: MOESM3 of Taxonomy of Cyrtochilum-alliance (Orchidaceae) in the light of molecular and morphological data

description: Additional file 3: Appendix S3. GenBank accession numbers for analysed sequences.
DOI: 10.6084/m9.figshare.c.3665893_d1.v1
title: MOESM3 of Near infrared spectroscopy for body fat sensing in neonates: quantitative analysis by GAMOS simulations

description: Additional file 3. Absorption coefficient spectra of water, hemoglobin and pure fat.
DOI: 10.15468/dl.d5u39p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja minispinosa Ishiyama & Ishihara, 1977",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038277-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3665890_d1.v1
title: Additional file 2: of MicroRNA based Pan-Cancer Diagnosis and Treatment Recommendation

description: This excel file contains the results from the core analysis of the 60 miRNA features. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3665893_d1
title: MOESM3 of Near infrared spectroscopy for body fat sensing in neonates: quantitative analysis by GAMOS simulations

description: Additional file 3. Absorption coefficient spectra of water, hemoglobin and pure fat.
DOI: 10.6084/m9.figshare.c.3665890_d1
title: Additional file 2: of MicroRNA based Pan-Cancer Diagnosis and Treatment Recommendation

description: This excel file contains the results from the core analysis of the 60 miRNA features. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3666301_d1.v1
title: Additional file 1: Table S1. of Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster

description: Summary of genes with the largest differential Tajimaâ  s D values. Table S2. Summary of analyzed reads. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3666301_d1
title: Additional file 1: Table S1. of Nucleotide diversity inflation as a genome-wide response to experimental lifespan extension in Drosophila melanogaster

description: Summary of genes with the largest differential Tajimaâ  s D values. Table S2. Summary of analyzed reads. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3666373_d2
title: Additional file 1 of TTCA: an R package for the identification of differentially expressed genes in time course microarray data

description: R code of TTCA (EUPL). (TXT 816 kb)
DOI: 10.6084/m9.figshare.c.3666316_d11.v1
title: Additional file 17: Figure S14. of Routine dyspnea assessment and documentation: Nurses’ experience yields wide acceptance

description: a. Do you first ask a yes/no question when assessing dyspnea? Method nurses used to assess dyspnea. b. If the patient responds “no”, do you skip asking for a number and record “0” on the flowsheet? Method nurses used to assess dyspnea. (ZIP 101 kb)
DOI: 10.6084/m9.figshare.c.3666316_d11
title: Additional file 17: Figure S14. of Routine dyspnea assessment and documentation: Nurses’ experience yields wide acceptance

description: a. Do you first ask a yes/no question when assessing dyspnea? Method nurses used to assess dyspnea. b. If the patient responds “no”, do you skip asking for a number and record “0” on the flowsheet? Method nurses used to assess dyspnea. (ZIP 101 kb)
DOI: 10.6084/m9.figshare.c.3666373_d3
title: Additional file 3 of TTCA: an R package for the identification of differentially expressed genes in time course microarray data

description: The complete result table is given in Table S4. (XLSX 816 kb)
DOI: 10.6084/m9.figshare.c.3666316_d13.v1
title: Additional file 27: Figure S24. of Routine dyspnea assessment and documentation: Nurses’ experience yields wide acceptance

description: a. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician requests vital signs and/or oxygen saturation. Nurses’ perception of physician response. b. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician orders laboratory or imaging studies. Nurses’ perception of physician response. c. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician orders an intervention to relieve dyspnea (pharmacologic or non-pharmacologic). Nurses’ perception of physician response. d. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician evaluates the patient. Nurses’ perception of physician response. e. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician requests nursing to reassess the patient later. Nurses’ perception of physician response. f. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician takes none of these actions. Nurses’ perception of physician response. (ZIP 467 kb)
DOI: 10.15468/dl.ttr533
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja parmifera (Bean, 1881)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038278-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3666316_d13
title: Additional file 27: Figure S24. of Routine dyspnea assessment and documentation: Nurses’ experience yields wide acceptance

description: a. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician requests vital signs and/or oxygen saturation. Nurses’ perception of physician response. b. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician orders laboratory or imaging studies. Nurses’ perception of physician response. c. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician orders an intervention to relieve dyspnea (pharmacologic or non-pharmacologic). Nurses’ perception of physician response. d. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician evaluates the patient. Nurses’ perception of physician response. e. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician requests nursing to reassess the patient later. Nurses’ perception of physician response. f. When you report a patient’s dyspnea rating to the physician responsible for the patient, the physician takes none of these actions. Nurses’ perception of physician response. (ZIP 467 kb)
DOI: 10.6084/m9.figshare.c.3666610_d1.v1
title: MOESM1 of Genetic analysis of teat number in pigs reveals some developmental pathways independent of vertebra number and several loci which only affect a specific side

description: Additional file 1: Table S1. Information on 1-Mb windows that explained more than 0.4% of the genomic variation as determined by GENSEL. Description: A listing of the information from all 1-Mb windows (defined in SSC and Mb) that exceeded 0.4% of the genomic variation as determined by GENSEL. The number of SNPs within each window (#SNPs), percentage of genomic variation explained by the SNPs on average across all post-burn-in samples (%Var), the frequency at which a 1-Mb window explained more than the average amount of genomic variation (pÂ &gt;Â Average), the position of the first SNP (map_pos0) and last SNP (map_posn) in the window. The last eight columns pertain to the SNPs within the 1-Mb window with the largest estimated effect: SNP name, location in build 10.2, effect size, standard error of the estimate, frequency of SNP retention in each sample, allele frequency of the B allele in the population, T-test for the effect and simple P-value corresponding to the T-test.
DOI: 10.6084/m9.figshare.c.3666610_d1
title: MOESM1 of Genetic analysis of teat number in pigs reveals some developmental pathways independent of vertebra number and several loci which only affect a specific side

description: Additional file 1: Table S1. Information on 1-Mb windows that explained more than 0.4% of the genomic variation as determined by GENSEL. Description: A listing of the information from all 1-Mb windows (defined in SSC and Mb) that exceeded 0.4% of the genomic variation as determined by GENSEL. The number of SNPs within each window (#SNPs), percentage of genomic variation explained by the SNPs on average across all post-burn-in samples (%Var), the frequency at which a 1-Mb window explained more than the average amount of genomic variation (pÂ &gt;Â Average), the position of the first SNP (map_pos0) and last SNP (map_posn) in the window. The last eight columns pertain to the SNPs within the 1-Mb window with the largest estimated effect: SNP name, location in build 10.2, effect size, standard error of the estimate, frequency of SNP retention in each sample, allele frequency of the B allele in the population, T-test for the effect and simple P-value corresponding to the T-test.
DOI: 10.6084/m9.figshare.c.3666637_d1.v1
title: Additional file 1: of Assessing the progression of chronic periodontitis using subgingival pathogen levels: a 24-month prospective multicenter cohort study

description: List of the ethics committees and approval numbers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3666637_d1
title: Additional file 1: of Assessing the progression of chronic periodontitis using subgingival pathogen levels: a 24-month prospective multicenter cohort study

description: List of the ethics committees and approval numbers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3666643_d1.v1
title: Additional file 4: Table S4. of GAVIN: Gene-Aware Variant INterpretation for medical sequencing

description: The tools used to evaluate our benchmark variant set and the web addresses used through which they were accessed. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3667381_d5
title: Additional file 7: Table S5. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Read mapping summary for the resistant and sensitive WGS. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3667405_d5
title: Additional file 4: Figure S2. of Renal function in patients with non-dialysis chronic kidney disease receiving intravenous ferric carboxymaltose: an analysis of the randomized FIND-CKD trial

description: (a) Ferritin and (b) transferrin saturation (TSAT) for patients with eGFR values at baseline and month 12 who did or did not receive alternative anemia therapy or permanently discontinued study therapy before month 12. BL, baseline; FCM, ferric carboxymaltose. (ZIP 456Â kb)
DOI: 10.6084/m9.figshare.c.3667381_d6.v1
title: Additional file 4: Table S3. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Repeat characterization of the EPSPS cassette. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3667393_d7.v1
title: Additional file 3: of The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights

description: COGs distribution. Here is reported the number of genes assigned to each COG category, for each pangenome partition (i.e. core, accessory, unique), for each pangenome (i.e. genus, pigmented, P.h.- group). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3667381_d6
title: Additional file 4: Table S3. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Repeat characterization of the EPSPS cassette. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3667393_d7
title: Additional file 3: of The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights

description: COGs distribution. Here is reported the number of genes assigned to each COG category, for each pangenome partition (i.e. core, accessory, unique), for each pangenome (i.e. genus, pigmented, P.h.- group). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3667426_d1.v1
title: Additional file 1: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: 1007 mature miRNA sequences that mapped uniquely to the miRBase 18. (TXT 15Â kb)
DOI: 10.6084/m9.figshare.c.3667426_d1
title: Additional file 1: of Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression

description: 1007 mature miRNA sequences that mapped uniquely to the miRBase 18. (TXT 15Â kb)
DOI: 10.15468/dl.sn67br
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja spinicauda (Jensen, 1914)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 72 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038279-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3667381_d8.v1
title: Additional file 16: Table S10. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Flow cytometry genome sizing data for 5 genotypes that indicate significant differences in size that correlates with EPSPS gene copy number. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3667438_d9
title: Additional file 11 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for Gal4. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7z 1260 kb)
DOI: 10.6084/m9.figshare.c.3667438_d9.v1
title: Additional file 11 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for Gal4. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7z 1260 kb)
DOI: 10.6084/m9.figshare.c.3667438_d10.v1
title: Additional file 13 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for NP. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 2910 kb)
DOI: 10.6084/m9.figshare.c.3667438_d11.v1
title: Additional file 14 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for HA. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 3000 kb)
DOI: 10.6084/m9.figshare.c.3667438_d10
title: Additional file 13 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for NP. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 2910 kb)
DOI: 10.6084/m9.figshare.c.3667438_d11
title: Additional file 14 of Identification of positive selection in genes is greatly improved by using experimentally informed site-specific models

description: The data and code for running the analysis for HA. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 3000 kb)
DOI: 10.6084/m9.figshare.c.3667381_d15.v1
title: Additional file 12: Table S8. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Primers used in polymerase chain reactions. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3667381_d15
title: Additional file 12: Table S8. of The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: a repetitive path to resistance

description: Primers used in polymerase chain reactions. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3667456_d1.v1
title: Additional file 1: of Community-based health care is an essential component of a resilient health system: evidence from Ebola outbreak in Liberia

description: gCHV Community Register Data. This file provides the raw data and summary data of CHW community registers in the LNRCS MNCH project communities. (XLS 299Â kb)
DOI: 10.6084/m9.figshare.c.3667456_d1
title: Additional file 1: of Community-based health care is an essential component of a resilient health system: evidence from Ebola outbreak in Liberia

description: gCHV Community Register Data. This file provides the raw data and summary data of CHW community registers in the LNRCS MNCH project communities. (XLS 299Â kb)
DOI: 10.6084/m9.figshare.c.3667504_d1
title: Additional file 2: of MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration

description: “Integration of methylation and expression using MultiDataSet”. This file is a tutorial of how to develop a function to implement a new method using MultiDataSet capabilities. (HTML 78 kb)
DOI: 10.6084/m9.figshare.c.3667504_d1.v1
title: Additional file 2: of MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration

description: “Integration of methylation and expression using MultiDataSet”. This file is a tutorial of how to develop a function to implement a new method using MultiDataSet capabilities. (HTML 78 kb)
DOI: 10.6084/m9.figshare.c.3667510_d1.v1
title: Additional file 1: of Do patients prefer optimistic or cautious psychiatrists? An experimental study with new and long-term patients

description: Data set video clips BMC Psychiatry spreadsheet. (XLS 168 kb)