cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1159615.10fu
title: SH1159615.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159617.10fu
title: SH1159617.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159620.10fu
title: SH1159620.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159622.10fu
title: SH1159622.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159624.10fu
title: SH1159624.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159625.10fu
title: SH1159625.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159631.10fu
title: SH1159631.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1159633.10fu
title: SH1159633.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17859740
title: Non-linear effects of Fontelis 20 SC (fungicide) on gut microbiota relate to changes in reproduction of Folsomia candida (Collembola)

description: These experiments were funded by the Alexander von Humboldt Foundation, Alexander von Humboldt Postdoctoral Fellowship.

 

Using Folsomia candida (Collembola) as a model organism, we investigated



the effects of Fontelis 20 SC on F. candida’s life-history,

their recovery in a Fontelis-free environment,

 the impact on gut bacteria during and after treatment, and 

whether changes in microbiota can be related to changes in reproduction.


The xlsx file contains the life-history data and the extracted mean microbiota data for the analysis.

The Qiime2-analysis output and code.rar file contains the commands we provided to Qiime2 and the program's outputs.

EC23_278.zip contains the sequences obtained from meta-barcoding.

 

Publication is in progress, as soon as the manuscript is accepted, we will link the article to the data.
DOI: 10.5281/zenodo.17859741
title: Non-linear effects of Fontelis 20 SC (fungicide) on gut microbiota relate to changes in reproduction of Folsomia candida (Collembola)

description: These experiments were funded by the Alexander von Humboldt Foundation, Alexander von Humboldt Postdoctoral Fellowship.

 

Using Folsomia candida (Collembola) as a model organism, we investigated



the effects of Fontelis 20 SC on F. candida’s life-history,

their recovery in a Fontelis-free environment,

 the impact on gut bacteria during and after treatment, and 

whether changes in microbiota can be related to changes in reproduction.


The xlsx file contains the life-history data and the extracted mean microbiota data for the analysis.

The Qiime2-analysis output and code.rar file contains the commands we provided to Qiime2 and the program's outputs.

EC23_278.zip contains the sequences obtained from meta-barcoding.

 

Publication is in progress, as soon as the manuscript is accepted, we will link the article to the data.
DOI: 10.15156/bio/sh1159634.10fu
title: SH1159634.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.28761773
title: Rossetta Stone for Change.pdf

description: Without any reference to gravity, the moon's orbit is offered mechanics. Implications directly offer an association to the cause of change.
DOI: 10.57833/cidacs/84k9y5
title: Replication Data for: Sistema de Vigilância Alimentar e Nutricional (SISVAN) - a partir de 2008

description: Microdados do Sistema de Vigilância Alimentar e Nutricional (SISVAN) a partir de 2008 no Brasil. Estes dados são referentes às ações de Vigilância Alimentar e Nutricional da Atenção Primária à Saúde (APS) e contém os registros de estado nutricional provenientes do sistema de gestão de programas de transferência condicionada de renda (como o Programa Bolsa Família e Auxílio Brasil), bem como os registros de estado nutricional e de marcadores do consumo alimentar inseridos pelo e-SUS APS. Estes dados são individualizados e organizados segundo CNS (Cartão Nacional de Saúde), permitem a avaliação de frequências relativas e fornecem prevalências de estado nutricional e de marcadores do consumo alimentar da população atendida na APS.
DOI: 10.15468/dl.hvrq8y
title: Occurrence Download

description: A dataset containing 131787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2006",
 "DecimalLongitude is greater than or equal to 7.38",
 "DecimalLongitude is less than or equal to 9.03",
 "DecimalLatitude is greater than or equal to 55.1",
 "DecimalLatitude is less than or equal to 56.06"
 ]
}

 The dataset includes 131787 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000472-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15081847
title: Internal tidal beams and their scattering in nonuniform stratification - observations at a continental slope in the northwest Bay of Bengal [Datasets]

description: Vertical profile measurements of horizontal currents and turbulence dissipation rate in the Northwestern Bay of Bengal
DOI: 10.15468/dl.dkqzbx
title: Occurrence Download

description: A dataset containing 1738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Magnolia Plum. ex L."
 ]
}

 The dataset includes 1738 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000482-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15083926
title: The impact of work, buffer and variability patterns on throughput: the role of blocking and starvation in the performance of reliable and unreliable merging lines

description: This is a dataset including the simulation results and statistical test results for the paper entitled "The impact of work, buffer and variability patterns on throughput: the role of blocking and starvation in the performance of reliable and unreliable merging lines"
DOI: 10.5281/zenodo.15083927
title: The impact of work, buffer and variability patterns on throughput: the role of blocking and starvation in the performance of reliable and unreliable merging lines

description: This is a dataset including the simulation results and statistical test results for the paper entitled "The impact of work, buffer and variability patterns on throughput: the role of blocking and starvation in the performance of reliable and unreliable merging lines"
DOI: 10.25625/mvznnc
title: Results Data Set of the Economic Laboratory Experiment about “Algorithm Aversion vs. Loss Aversion” as conducted in Ostfalia Laboratory for Experimental Economic Research (OLEW) in April and May 2024

description: This data set contains results (+ data dictionary) of the economic laboratory experiment about “algorithm aversion vs. loss aversion” as conducted in Ostfalia Laboratory for Experimental Economic Research (OLEW) in April and May 2024.
DOI: 10.25625/mvznnc/vmxggr
title: OLEW_algorithm-aversion_vs_loss-aversion_results_dictionary_2024-05.pdf

description: Data dictionary explaining the meaning behind the different variables in the results data set and providing sample values or value ranges.
DOI: 10.25625/mvznnc/xd8wx6
title: OLEW_algorithm-aversion_vs_loss-aversion_results_2024-05.tab

description: CSV file containing the experimental results data
DOI: 10.25625/mvznnc/zjcvdh
title: OLEW_algorithm-aversion_vs_loss-aversion_results_dictionary_2024-05.pdf

description: Data dictionary explaining the meaning behind the different variables in the results data set and providing sample values or value ranges.
DOI: 10.15468/dl.kcwsxg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-55.63783 51.78587,-57.55216 51.14158,-58.3883 49.8114,-57.70618 49.49801,-55.06573 51.69049,-55.63783 51.78587))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Carex saxilittoralis A.Robertson, Carex viridula var. saxilittoralis (A.Robertson) Crins)"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000483-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14006097
title: Label-free metabolic fingerprinting of motile mammalian spermatozoa with subcellular resolution

description: Acquisition

The fluorescence lifetime images of mouse sperm cells ex vivo were acquired using a Carl Zeiss LSM880 NLO microscope (Carl Zeiss, Germany) coupled to a (\(690-1040\,\textrm{nm} \)) Ti:Saphire laser system (Chameleon Ultra II, Coherent) pulsing at 80 MHz and a TCSPC card (HydraHarp 400, PicoQuant). Sperm samples were kept in an Okolab chamber at \(37^{\circ}\) and \(5\%\,\textrm{CO}_2\). The samples were excited with a laser of \(740\,\textrm{nm}\) wavelength using a \(40\, \times \, 1.1 \) NA water immersion objective. A dichroic mirror (\(690\,\textrm{nm} \)) was used to separate the fluorescence signal from the excitation laser. NAD(P)H fluorescence was collected through a \(460 (\pm20)\,\textrm{nm}\) filter by a hybrid detector (HPM-100-40, Becker & Hickl). An additional filter was used to block near-infrared light.  The FLIM data were recorded using the SymPhoTime 64 software (PicoQuant) using 16 ps TCSPC sampling (length of the time slot). 16 time frames with dimension \(512\times512\) were acquired, with the scanning speed \(5\, \mu \textrm{s/pixel}\) (giving full acquisition time of 1 minute and 23 seconds).

Export

Custom software, called TTTR Data Analysis, was used to open the files and adjust them for export. Each file is a composition of 16 time frames of the same scene. The sperm were not immobilised, each scene was acquired multiple times sequentially, thus, each time frame may include the sperm in a different position. Therefore, some of the sperm may be blurry. For this dataset we provide only one time frame of the field from the selected data, trying to pick the time frame with the least movement of the sperm. 

Manual Annotation

Masks for the training, validation and test dataset were manually prepared in the binary editor of NIS-Elements by Fitore Kusari. Two binary masks are provided for each image, for the heads and the mitochondrial midpiece of the sperm.

Final dataset size is summarized in:




 
Images
Midpiece Objects
Head Objects


Train
235
17952
8620


Validation
16
1448
678


Test
30
2507
1167


Sum
281
21907
10465
DOI: 10.6084/m9.figshare.28660445
title: IndoMEE v1 MAGs

description: The Indonesian Microbiome Ecology and Evolution (IndoMEE) version 1 database is a catalogue of species-level reference genomes (MAGs) assembled from the gut metagenomes of 116 human individuals, using short-reads. These samples were collected from 8 communities across the Indonesian archipelago representing a range of lifestyles from hunter-gatherer and agricultural, to urban.
DOI: 10.5281/zenodo.15083921
title: THE APPEARANCE OF RESISTANCE LITERATURE IN AMERICA IN THE 20TH CENTURY
DOI: 10.5281/zenodo.15083922
title: THE APPEARANCE OF RESISTANCE LITERATURE IN AMERICA IN THE 20TH CENTURY
DOI: 10.15468/dl.3ta3xy
title: Occurrence Download

description: A dataset listing the 18 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bull Kelp Forest Ecosystem Monitoring Database, Northern California, 1971-2023",
 "Year 2019-2019"
 ]
}

 The dataset's 18 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000480-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28660931
title: lit fishing boats.mat

description: Dataset of Fishing Vessel Operations in the South China Sea Based on Nighttime Light Data (2013-2022)
DOI: 10.17632/yz5np7kdj3.1
title: Design and Real-Time Implementation of a 2-Rate Control in CPS-Like Environment: Controller Parameters

description: This data repository contains the parameters of the controllers designed for the two degrees of freedom helicopter system considered in the article: "Design and Real-Time Implementation of a 2-Rate Control in CPS-Like Environment" submitted to IEEE Transactions on Aerospace and Electronic Systems journal.
DOI: 10.15468/dl.b3gbyf
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Alosa alosa (Linnaeus, 1758)",
 "Year 1975-2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/svmj7s95bs.1
title: Amplified dosage of the NKX2-1 lineage transcription factor controls its oncogenic role in lung adenocarcinoma

description: Amplification-mediated oncogene overexpression is a critical and widespread driver event in cancer, yet our understanding of how amplification and dosage mediate oncogene regulation is limited. Here, we find that the most significant focal amplification event in lung adenocarcinoma (LUAD) targets a lineage “super-enhancer” near the NKX2-1 lineage transcription factor. The NKX2-1 super-enhancer is targeted by focal and co-amplification with NKX2-1 and controls NKX2-1 expression and regulation. We find that NKX2-1 directly controls enhancer accessibility to drive a lineage-addicted state in LUAD. We precisely map the effects of NKX2-1 dosage modulation upon both overexpression and knockdown and identify both linear and non-linear regulation by NKX2-1 dosage. We find that NKX2-1 is a widespread dependency in LUAD cell lines and that NKX2-1 confers persistence to EGFR inhibitors. Our data suggest a defining role for dosage in the oncogenic regulation of amplified NKX2-1 and that amplified NKX2-1 lineage addiction defines LUAD tumors.
DOI: 10.5281/zenodo.15083904
title: Дополнительные материалы rbcL Betula
DOI: 10.5281/zenodo.15083905
title: Дополнительные материалы rbcL Betula