cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16443954.v1
title: Supplementary Material for: The Role of Hepatic Arterial Infusion Chemotherapy in the Treatment of Hepatocellular Carcinoma: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> The main aim of this study was to investigate comprehensively the clinical effect of hepatic arterial infusion chemotherapy (HAIC) on patients suffering from hepatocellular carcinoma (HCC). <b><i>Methods:</i></b> The following electronic databases were searched for eligible articles published from inception to July 2020: PubMed, Web of Science, Embase, and Cochrane Library. The main final indicators were overall survival (OS), disease-free survival (DFS), and progression-free survival (PFS). <b><i>Results:</i></b> A total of 26 studies entailing 4,506 cases were included for a meta-analysis. The results showed that HAIC could improve advanced HCC patients’ OS (HR, 0.49; 95% CI: 0.37–0.61) and PFS (HR, 0.52; 95% CI: 0.36–0.68). Remarkably, compared with Japan (HR, 0.58) and Korea (HR, 0.54), for the unresectable HCC patients, the HAIC group achieved higher efficacy on OS than the control group in China (HR, 0.24). The resectable HCC patients, who received HAIC adjuvant chemotherapy, exhibited favorable prognosis for OS (HR, 0.58; 95% CI: 0.27–0.88) and DFS (HR, 0.49; 95% CI: 0.31–0.68). <b><i>Conclusion:</i></b> HAIC improved long-term survival for both resectable and unresectable HCC patients in comparison with other therapies. However, the clinical effect of HAIC needs to be ascertained by large-scale well-designed studies.
DOI: 10.6084/m9.figshare.26954023.v2
title: Dataset and Code for leaf size and development paper

description: This is the dataset for the paper "<b>The determination of leaf size on the basis of developmental traits</b>"
DOI: 10.6084/m9.figshare.14169662.v1
title: Tabel 1 OK.xlsx

description: a table of karya seni, cardigan, dan baju
DOI: 10.6084/m9.figshare.27366108.v1
title: data

description: inequality
DOI: 10.6084/m9.figshare.3803121.v1
title: Supplementary Material for: A Systematic Review of the Definitions of Vascular Cognitive Impairment, No Dementia in Cohort Studies

description: <i>Background/Aims:</i> No set operational criteria for vascular cognitive impairment, no dementia (VCI-ND) have yet been established. The aim of this study is to undertake a systematic review to compare definitions of VCI-ND that have been used in cohort studies. <i>Methods:</i> Medline, PsycINFO and Embase were searched from inception to October 13, 2015. Initially, 3,142 records were screened, and 30 were included in this review. <i>Results:</i> No single set of criteria for defining VCI-ND was identified. VCI-NDwas broadly defined as an absence of dementia, cognitive impairment in at least one cognitive domain with signs of vascular involvement, and intact activities of daily living. <i>Conclusion:</i> Defining criteria will enable individuals with VCI-ND to be efficiently compared across cohort studies to more accurately determine the prevalence and risk of dementia.
DOI: 10.6084/m9.figshare.3562887.v1
title: Appendix A. Figures showing sampling locations (Fig. A1), seedling root system size as a function of age (Fig. A2), and the rank-abundance distributions of fungi (Figs. A3–A5).

description: Figures showing sampling locations (Fig. A1), seedling root system size as a function of age (Fig. A2), and the rank-abundance distributions of fungi (Figs. A3–A5).
DOI: 10.17632/69dmz8n77c
title: Nicory_2019_goat_mik_production_composition

description: PHD Thesis from Isis Miranda Carvalho Nicory - Goat milk data and composition
DOI: 10.17632/s6k6w23z25
title: Seismological database for Banat Seismic Region (Romania)

description: This database contains a parametric catalogue of earthquakes and a catalogue with focal mechanisms calculated for the Banat seismic region in western Romania and is the result of Eugen Oros' doctoral thesis:
"Research on seismic hazard in Banat". PhD Thesis, University of Bucharest, Faculty of Physics, 393 pp., Coord. Prof. Gh. Marmureanu (2011)
It was published in 2 papers:
E. OROS, M. POPA, I. A. MOLDOVAN (2008). SEISMOLOGICAL DATABAS EFOR BANAT SEISMIC REGION (ROMANIA) - PART 1: THE PARAMETRIC EARTHQUAKE CATALOG. Romanian Journal of Physics 53 (7-8): 955-964

E. OROS, M. POPA, E. POPESCU, I. A. MOLDOVAN (2008). SEISMOLOGICAL DATABASE FOR BANAT SEISMIC REGION (ROMANIA) –PART 2: THE CATALOG OF THE FOCAL MECHANISM SOLUTIONS. Romanian Journal of Physics 53 (7-8): 968-977

If you use this catalogue in your work, besides the Mendeley Data citations please provide references to the before mentioned papers
 following articles:
DOI: 10.6084/m9.figshare.20442777.v2
title: VOCHi-C data

description: Virtual origin Capture HiC datasets
DOI: 10.6084/m9.figshare.17029700.v1
title: 3D translational landslide evolution in sensitive soils

description: The datasets include all used data in a paper, titled at '3D translational landslide evolution in sensitive soils', to Journal of Geophysical Research - Earth Surface, by Dr. Wangcheng Zhang, ETH Zurich - wangcheng.zhang@igt.baug.ethz.ch; and Prof. Alexander Puzrin, ETH Zurich1. Data generated in the study are mainly from analytical calculations and numerical modelling. <br>2. 'Data used.xlsx' includes data for 21 figures and 3 tables of the paper.<br>3. Numerical models used have been described in detail in the paper, including governing equations, discretisation and solving techniques.<br>4. Both raw data (input data) and processed data (by equations or numerical modelling) are given and detailed.<br>5. Numerical contour maps have been attached separately, e.g. Fig13-Contour1.<br>6. Four typical numerical case are given in the form of .mp4 files showing dynamic evolution of tranlational landslides.<br>7. Readers need more information about the data and numerical modelling please contact Dr. Wangcheng Zhang via wangcheng.zhang@igt.baug.ethz.ch.<br><br>
DOI: 10.6084/m9.figshare.25253389.v1
title: Data files for github repository phosphorus_partitioning for "Diel Partitioning in Microbial PhosphorusAcquisition in the Sargasso Sea"

description: [will complete description later]
DOI: 10.17608/k6.auckland.23272364.v1
title: Dataset V_Raw student H5P assignment grades 2018-19_v1 01-06-2023.csv

description: <i>Dataset V:</i> We analyzed student grades from the MEDSCI 203 course (Faculty of Medical and Health Sciences, University of Auckland), to compare student grades in coursework assignments before (2018) and after incorporating interactive online resources using H5P in 2019. We undertook descriptive analyses using Excel and ran a t-test analysis on dataset V to determine the significance (p&lt;.001) of changes in assignment grades between 2018 and 2019, before and after the introduction of H5P.<br>This is underlying data associated with the article 'Faculty development for strengthening online teaching capability: being responsive to what staff want, evaluated with Kirkpatrick’s model of teaching effectiveness' which has been published in MedEdPublish 2023, <b>13</b>:127 (https://doi.org/10.12688/mep.19692.1).<br>
DOI: 10.17632/p9892pct9p
title: Data for: The Role of Non-Contributory Pensions on Internal Mobility in Spain

description: Stata programs to accompany The Role of Non-Contributory Pensions on Internal Mobility in Spain, by Catalina Amuedo-Dorantes and Cristina Borra
DOI: 10.6084/m9.figshare.20352933.v2
title: Torsional Periodic Lattice Distortions and Diffraction of Twisted 2D Materials

description: <strong>TorsionalPLD_SAEDs.zip</strong>:<strong> </strong>Raw Gatan format (.dm3, .dm4) selected area electron diffraction (SAED) patterns of several twisted materials, including twisted bilayer graphene. <br> <strong>TorsionalPLD_SAED_Simulation.zip</strong>:<strong> </strong>These software parameter files simulate two selected area electron diffraction (SAED) patterns. One for a pristine twisted bilayer graphene, the other for twisted bilayer graphene, structurally distorted with torsional periodic lattice distortion (PLD). <br> See<br> https://doi.org/10.48550/arXiv.2203.06510 for additional information.
DOI: 10.6084/m9.figshare.24467026.v1
title: AlphaFold Models

description: PDB Files for alphafold models of Penicillin Binding Type-Thioesterases
DOI: 10.6084/m9.figshare.21769085.v1
title: 3D reconstructions of reef-building corals (supplement data) - Part seven

description: T.p is Turbinaria peltata, L.h isLobophyllia hemprichii, P.m is Pavona minuta.
DOI: 10.6084/m9.figshare.23524584.v2
title: DFT data for Figures

description: Density functional calculation data for generating the Figures used in <strong>https://doi.org/10.1002/adma.202211966</strong>
DOI: 10.6084/m9.figshare.26865685.v1
title: <b>Phenotypes Associated with Polycystic Ovary Syndrome Risk Variants</b>: Supplementary Tables

description: Out study demonstrates that PCOS genetic risk variants may influence hormone levels and ovarian morphology and increase the risk of obesity. Increased genetic risk for PCOS appears to drive traits that underly the classical clinical presentation of PCOS.
DOI: 10.17632/z956gdk4f7
title: questionnaire for PDR delayed presentation

description: the original data for anaylsis of dr delayed presentation
DOI: 10.25377/sussex.24793450.v1
title: UoS campus and Stanmer park outdoor navigational data

description: This dataset contains omnidirectional 1440✕1440 resolution images taken using a Kodak Pixpro SP360 camera paired with RTK GPS information obtained using a simple RTK2B - 4G NTRIP kit and fused yaw, pitch and roll data recorded from a BNO055 IMU. The data was collected using a 4 wheel ground robot (SuperDroid IG42-SB4-T) that was manually controlled by a human operator. The robot was driven 10 times along a route on the University of Sussex campus (shown in campus.png) and 10 times at the adjacent Stanmer Park (shown in stanmer.png). The first route is a mix of urban structures (university buildings), small patches of trees and paths populated by people and is approximately 700m long. The second route consists mostly of open fields and a narrow path through a forest and is approximately 600m long. The recordings took place at various days and times starting in May 2023, with the date and time indicated by the filename. For example ‘campus_route5_2023_11_22_102925.zip’ corresponds to the 5th route recorded on the Sussex campus on 22/11/2023 starting at 10:29:25 GMT. During the recordings the weather varied from clear skies and sunny days to overcast and low light conditions. Each recording consists of the .jpg files that make up the route, and a .csv file with the following columns:X, Y and Z coordinate (in mm) and zone representing location in UTM coordinates from GPSHeading, pitch and roll (in degrees) from IMU. In some early routes, the IMU failed and when this occurs these values are recorded as “NaN”.Filename of corresponding camera imageLatitude (in decimal degrees west) and Longitude (in decimal degrees north) and Altitude (in m) from GPSGPS quality (1=GPS, 2=DGNSS, 4=RTK Fixed and 5=RTK Float) horizontal dilation (in mm)Timestamp (in ms)<br>
DOI: 10.6084/m9.figshare.28730342.v1
title: Data source for day-ahead dispatch method with key features of continuous power balance

description: We use IEEE 30-bus system and practical 661-bus utility system to verify the effectiveness of the proposed day-ahead dispatch method. The parameters of generators in the IEEE 30-bus system and the practical 661-bus utility system have been uploaded.
DOI: 10.6084/m9.figshare.21739616.v3
title: Thousand-seed weight data from Central Europe

description: The dataset contains measured thousand-seed weight data (g) for taxa of the Central European flora.
DOI: 10.6084/m9.figshare.26956186.v1
title: Bosch et al. 2022. Habitat configurations shape trophic and energetic dynamics of reef fishes in a tropical-temperate transition zone: implications under a warming future

description: R scrip and raw data to replica analysis in Bosch et al. 2022. Habitat configurations shape trophic and energetic dynamics of reef fishes in a tropical-temperate transition zone: implications under a warming future - published in Oecologia
DOI: 10.6084/m9.figshare.22713406.v1
title: Impact of Agricultural Tarping on Soil-Dwelling Arthropods

description: Data associated with manuscript: Differing short-term impacts of agricultural tarping on soil-dwelling and surface-active arthropods by Kinnebrew et al. 2023, <em>Agriculture, Ecosystems and Environment.</em> DOI: 10.1016/j.agee.2023.108542 This dataset details the soil-dwelling arthropods collected during the experiment. <br> <br> Column Names and Descriptions: <br> 1. Date: Date of collection 2. Sampling: The time period in which collection occurred. Pretarps: 1 week before tarps were applied; Tarps on: during tarping; Tarps off 1w: 1 week after tarp removal; Tarps off 3w: 3 weeks after tarp removal; Tarps off 5w: 5 weeks after tarp removal 3. Farm: The location of the plot – the three farms sampled at included Diggers’, Intervale Community Farm (ICF), and Catamount Farm (all located in Chittenden County, Vermont, USA) 4. Treatment: The type of tarp treatment applied. SilageTarp: silage (black plastic) tarp; ClearPlastic: clear plastic tarp; Control: no tarp 5. PlotName: Unique plot identifier; the first three digits represent the farm on which the plot was located (ICF: Intervale Community Farm, Dig: Diggers’ Farm, Cat: Catamount Farm), the fourth digit represents the treatment (P: clear plastic, S: silage tarp, C: control), and the fifth digit represents the replicate number (1-6) 6. Num: number of individuals collected 7. SpCode: unique identifier for each morphospecies 8. Species: classification at the species level, if available 9. Genus: classification at the genus level, if available 10. Family: classification at the family level, if available 11. Order: classification at the order level 12. Class: classification at the class level
DOI: 10.6084/m9.figshare.6859808.v1
title: Supplementary Material for: Surgical Cystotomy of a Large Iris Pigment Epithelial Cyst with Microinstrumentation

description: <b><i>Purpose:</i></b> Surgical intervention is indicated for large primary iris pigment epithelial cysts that significantly affect vision or compromise adjacent structures. Methods described in the literature include laser photocoagulation, needle aspiration, and complete resection. <b><i>Methods:</i></b> We describe a novel surgical technique in which a surgical cystotomy is created for a large, symptomatic iris pigment epithelial cyst using microsurgical instruments for a patient in whom needle aspiration was unsuccessful. <b><i>Results:</i></b> The patient’s visual symptoms had largely resolved within 1 week postoperatively, no complications were encountered, and there was no clinical or sonographic evidence of cyst recurrence after 14 months. <b><i>Conclusion:</i></b> Surgical cystotomy with microinstrumentation may be an effective tool for management of primary iris pigment epithelial cysts, especially as an alternative after needle aspiration fails.
DOI: 10.25573/data.24886284.v1
title: Yeardley Family Summary

description: Life histories of George Yeardley's immediate family.
DOI: 10.6084/m9.figshare.5777940.v4
title: Data from "Soil microbial respiration adapts to ambient temperature in global drylands"

description: R code and Data from "Dacal, M., Bradford, M. A., Plaza, C., Maestre, F. T. & García- Palacios, P. (2019) Soil microbial respiration adapts to ambient temperature in global drylands. Nature Ecology and Evolution 3, 232-238. DOI: https://doi.org/10.1038/s41559-018-0770-5 "<br>There are two items: the first one contains the R code (DacaletalResDATA.txt) whereas the second one has the data (DacaletalResDATA.xslx). In the latter item there are two spreadsheets. The spreadsheet "DATA" contains the raw data at a microsite scale. The spreadsheet "METADATA" contains the associated metadata, where a description of all the variables and units can be found. All the methodological details can be found in the article.
DOI: 10.6084/m9.figshare.6783569.v2
title: Scripts for Analysis

description: Scripts used for analysis of V1 and V2 Datasets.<br>seurat_v1.R - initialize seurat object from 10X Genomics cellranger outputs. Includes filtering, normalization, regression, variable gene identification, PCA analysis, clustering, tSNE visualization. Used for v1 datasets. <br>merge_seurat.R - merge two or more seurat objects into one seurat object. Perform linear regression to remove batch effects from separate objects. Used for v1 datasets. <br>subcluster_seurat_v1.R - subcluster clusters of interest from Seurat object. Determine variable genes, perform regression and PCA. Used for v1 datasets.<br>seurat_v2.R - initialize seurat object from 10X Genomics cellranger outputs. Includes filtering, normalization, regression, variable gene identification, and PCA analysis. Used for v2 datasets. <br>clustering_markers_v2.R - clustering and tSNE visualization for v2 datasets. <br>subcluster_seurat_v2.R - subcluster clusters of interest from Seurat object. Determine variable genes, perform regression and PCA analysis. Used for v2 datasets.<br>seurat_object_analysis_v1_and_v2.R - downstream analysis and plotting functions for seurat object created by seurat_v1.R or seurat_v2.R. <br>merge_clusters.R - merge clusters that do not meet gene threshold. Used for both v1 and v2 datasets. <br>prepare_for_monocle_v1.R - subcluster cells of interest and perform linear regression, but not scaling in order to input normalized, regressed values into monocle with monocle_seurat_input_v1.R <br>monocle_seurat_input_v1.R - monocle script using seurat batch corrected values as input for v1 merged timecourse datasets. <br>monocle_lineage_trace.R - monocle script using nUMI as input for v2 lineage traced dataset. <br>monocle_object_analysis.R - downstream analysis for monocle object - BEAM and plotting. <br>CCA_merging_v2.R - script for merging v2 endocrine datasets with canonical correlation analysis and determining the number of CCs to include in downstream analysis. <br>CCA_alignment_v2.R - script for downstream alignment, clustering, tSNE visualization, and differential gene expression analysis.
DOI: 10.6084/m9.figshare.28715165.v1
title: Foclóir Tráchtais v1.5

description: Is foclóir ríomheolaíochta é an Foclóir Tráchtas curtha le chéile ag Seathrún (Jeffrey) Sardina dá thráchtas PhD. Cruthaíodh é chun téarmaí ríomheolaíochta nach raibh ar fáil i bhfoclóirí eile a chur ar fáil.
DOI: 10.6084/m9.figshare.5241841.v1
title: Erratum: TGF-β Type I Receptor Kinase Inhibitor EW-7197 Suppresses Cholestatic Liver Fibrosis by Inhibiting HIF1α-Induced Epithelial Mesenchymal Transition

description: <b><i>Background/Aims: </i></b>Hypoxia is an environmental factor that aggravates liver fibrosis. HIF1α activates hepatic stellate cells (HSCs) and increases transforming growth factor-β (TGF-β) signaling and the epithelial mesenchymal transition (EMT), accelerating the progression of fibrosis. We evaluated the anti-fibrotic therapeutic potential of a small-molecule inhibitor of TGF-β type I receptor kinase, EW-7197, on HIF1α-derived TGF-β signaling in cholestatic liver fibrosis. <b><i>Methods: </i></b>We used a bile duct ligation (BDL)-operated rat model to characterize the role of HIF1α-derived TGF-β signaling in liver fibrosis. Cellular assays were performed in LX-2 cells (human immortalized HSCs). The anti-fibrotic effects of EW-7197 in liver tissues and HSCs were investigated via biochemical assays, immunohistochemistry (IHC), immunofluorescence (IF), chromatin immunoprecipitation (ChIP) assays, real-time PCR, and western blotting. <b><i>Results: </i></b>In our BDL rat model, orally administered EW-7197 inhibited fibrosis and attenuated HIF1α-induced activation of HSCs and EMT <i>in vivo</i>. In addition, EW-7197 inhibited HIF1α-derived HSC activation and expression of EMT markers in LX-2 cells <i>in vitro. </i><b><i>Conclusion: </i></b>This study suggests that EW-7197 exhibits potential as a treatment for liver fibrosis because it inhibits HIF1α-induced TGF-β signaling.
DOI: 10.6084/m9.figshare.19686444.v1
title: Input_MTET

description: Input data to run MTET analyses
DOI: 10.6084/m9.figshare.9117095.v4
title: secondary_structures_of_eukaryotic_group_II_introns_rfam_set(no_yadd)

description: secondary structures of eukaryotic group II introns rfam set (no yadd)
DOI: 10.6084/m9.figshare.9923768.v1
title: Supplementary Material for: Does Oxygen Stable Isotope Composition in Primates Vary as a Function of Vertical Stratification or Folivorous Behaviour?

description: Stable isotopes of oxygen often vary within a community of primates. For example, folivorous monkeys that forage in the upper reaches of the forest canopy tend to evince high δ<sup>18</sup>O values, whereas those that prefer the understory tend to have lower δ<sup>18</sup>O values. Given that leaves also have high δ<sup>18</sup>O values, particularly higher in the canopy, there is uncertainty as to which behavioural variable – vertical stratification or folivory – is the primary determinant of variation in δ<sup>18</sup>O values. Here, we explore further δ<sup>18</sup>O values from the Taï Forest monkeys (<i>n</i> = 7 species; <i>n</i> = 33 individuals) by examining the interaction between diet and vertical stratification, thereby allowing us to differentiate the effects of each covariate. We found that δ<sup>18</sup>O values varied as a function of mean canopy height, but not folivory, resolving uncertainty about the primary cause of δ<sup>18</sup>O variation. This outcome revolves largely, but not entirely, on the behaviours of <i>Procolobus verus</i>, a highly folivorous but understory forager. Relatively elevated values in <i>Cercopithecus diana</i>, a frugivorous but middle-to-high canopy forager, raises the possibility that plant reproductive tissues (e.g., fruits, flowers) may be increasingly sensitive to evaporative fractionation at higher forest canopy levels. Overall, our results further affirm the value of using δ<sup>18</sup>O values to estimate the vertical behaviour of primate species in a fossil assemblage.
DOI: 10.17632/2w55wsjywz
title: Data for: A study on the fluid refrigerant charge in a Two-Phase Mechanically Pumped Loop system using R134a and R1234yf

description: fluid refrigerant charge in a Two-Phase Mechanically Pumped Loop system using R134a and R1234yf
DOI: 10.6084/m9.figshare.14420708.v1
title: Supplementary Material for: Interleukin 8 Elicits Rapid Physiological Changes in Neutrophils That Are Altered by Inflammatory Conditions

description: A sufficient response of neutrophil granulocytes stimulated by interleukin (IL)-8 is vital during systemic inflammation, for example, in sepsis or severe trauma. Moreover, IL-8 is clinically used as biomarker of inflammatory processes. However, the effects of IL-8 on cellular key regulators of neutrophil properties such as the intracellular pH (pH<sub>i</sub>) in dependence of ion transport proteins and during inflammation remain to be elucidated. Therefore, we investigated in detail the fundamental changes in pH<sub>i</sub>, cellular shape, and chemotactic activity elicited by IL-8. Using flow cytometric methods, we determined that the IL-8-induced cellular activity was largely dependent on specific ion channels and transporters, such as the sodium-proton exchanger 1 (NHE1) and non-NHE1-dependent sodium flux. Exposing neutrophils in vitro to a proinflammatory micromilieu with N-formyl-Met-Leu-Phe, LPS, or IL-8 resulted in a diminished response regarding the increase in cellular size and pH. The detailed kinetics of the reduced reactivity of the neutrophil granulocytes could be illustrated in a near-real-time flow cytometric measurement. Last, the LPS-mediated impairment of the IL-8-induced response in neutrophils was confirmed in a translational, animal-free human whole blood model. Overall, we provide novel mechanistic insights for the interaction of IL-8 with neutrophil granulocytes and report in detail about its alteration during systemic inflammation.