cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/4hh45vkp38
title: Data for: Deep learning-based early weed segmentation using motion blurred UAV images of sorghum fields

description: Weeds are undesired plants in agricultural fields that affect crop yield and quality by competing for nutrients, water, sunlight and space. Site-specific weed management (SSWM) through variable rate herbicide application and mechanical weed control have long been recommended in order to reduce the amount of herbicide and impact caused by uniform spraying. Accurate detection and classification of weeds in crop fields is a crucial first step for implementing such precise strategies. Drones are commonly used for image capturing but high wind pressure and different drone settings have a severe effect on the image quality, which potentially results in degraded images, e.g. due to motion blur. 
We publish a manually annotated and expert curated drone image dataset for weed detection in sorghum fields under challenging conditions. Our results show that our trained models generalize well regarding the detection of weeds, even for degraded captures due to motion blur. An UNet-like architecture with ResNet-34 as feature extractor achieved an F1-score of over 89 % on a hold-out test-set. Further analysis indicate that the trained model performed well in predicting the general plant shape, while most mis-classifications appeared at borders of the plants. Beyond that, our approach can detect intra-row weeds without additional information as well as partly occluded plants in contrast to existing research.

Github link: https://github.com/grimmlab/UAVWeedSegmentation

Please cite our original publication if you have used the data in your project or in any follow-up analysis (https://doi.org/10.1016/j.compag.2022.107388): 

@article{GENZE2022107388,
title = {Deep learning-based early weed segmentation using motion blurred UAV images of sorghum fields},
journal = {Computers and Electronics in Agriculture},
volume = {202},
pages = {107388},
year = {2022},
issn = {0168-1699},
doi = {https://doi.org/10.1016/j.compag.2022.107388},
url = {https://www.sciencedirect.com/science/article/pii/S0168169922006962},
author = {Nikita Genze and Raymond Ajekwe and Zeynep Güreli and Florian Haselbeck and Michael Grieb and Dominik G. Grimm},
keywords = {Deep learning, Weed detection, Weed segmentation, UAV, Precision agriculture},
}
DOI: 10.6084/m9.figshare.25074098.v1
title: PurEst

description: We present PurEst, a statistical framework that uses genome-wide DNA methylation data as the only input to first estimate tumor purity of samples and then adjust DNA methylation values of individual CpGs with respect to tumor purity to better reflect somatic changes in tumor cells and improve biological inference. Here we have added scripts and reference data for calculating tumor purity and adjusting Illumina 450/850K DNA methylation beta values. Updated scripts can be found on https://github.com/StaafLab/PurEst.
DOI: 10.17632/xgdx9gf44p
title: Data for: LIFE-CYCLE-COST ANALYSIS OF DISTRICT COOLING FOR HIGH ENERGY DEMAND OF LOW-RISE BUILDINGS

description: The attached excel files contain all economic calculations.
DOI: 10.6084/m9.figshare.13611047.v1
title: HEAVY METALS CONTAMINATION, POLLUTION INDICES AND HEALTH RISK ASSESSMENT OF SOILS IN DUMPSITES WITHIN THE VICINITY OF UNIVERSITY OF PORT HARCOURT, NIGERIA.docx

description: This study investigated the levels of Lead(Pb), Zinc (Zn), Cadmium (Cd), Manganese (Mn), Chromium (Cr), Nickel (Ni), Arsenic (As) and Copper (Cu) in soils from four selected dumpsites in the vicinity of the University of Port Harcourt, East-west Road, Choba, Rivers State, Nigeria. Analysis of metals was done by wet digestion and atomic absorption spectroscopy, and the concentrations were found to fall within the following range; Zn (74.54–122.42mg/kg), Cr (28.76-42.17mg/kg), Ni (15.71-24.95mg/kg), Cu (13.62-23.17mg/kg), Mn (6.15-10.74mg/kg), Pb (4.87-10.32mg/kg), Cd (2.79-5.15mg/kg) and As (0.35-0.85mg/kg) for the four samples respectively, showing their occurrence to be in the order Zn&gt;Cr&gt;Ni&gt;Cu&gt;Mn&gt;Pb&gt;Cd&gt;As. The results were further evaluated with some pollution indices (Geo-accumulation Index (Igeo), Contamination factor (CF), Pollution Load Index (PLI), Ecological Risk factor (Er<sup>i</sup>), and The Potential Ecological Risk Index (R<sub>i</sub>)). The average daily intakes (ADI) of metals were below the reference dose (RfD) recommended by World Health Organisation (WHO) showing little or no risk from heavy metals is associated with the routes of exposure. Estimation of pollution indices showed soils from dumpsites were extremely polluted with cadmium. Specifically, Igeo results graded soil samples as unpolluted to moderately polluted (Ni and Cr in sites B and C), with Cd being observed to be highly polluted in all the sample areas studied. The same trend was also observed for the CF, which ranged from very slightly contaminated to moderately polluted in the following order Mni values were below 40, showing a low ecological risk posed by the other metals save Cd which had a moderate (sites B and C) to high ecological risk (sites A and D). R<sub>i</sub> values (113- 200) is a presentation of a low to moderate potential ecological risk posed by the metals in all sample locations, with cadmium contributing 96.38–96.47% of the entire potential ecological risk. Measured concentrations of these metals used to calculate the health risk for adult and children population, showed that the average daily intakes (ADI) of metals were below the reference dose recommended by World Health Organisation (WHO) showing that little or no risk from heavy metals in these sites is associated with the routes of exposure. However, the ADI of Cu in control site was greater than the RfD by WHO standards thus calls for concern for non-carcinogenic health complications. The Hazard index (HI) value for adult and child population, via exposure was &lt; 1, indicating low non-carcinogenic effects to the population. However, the Hazard Index value for the population in the control site was &gt;1, indicating a high non-carcinogenic risk to adult and children exposed in the area. The carcinogenic risk for all metals in this study was within the cancer safe limits, and poses no potential to cause carcinogenic health risk.<br><br>
DOI: 10.17632/7bsjsbdcg7
title: A study of Identification and verification of the role of key metabolites and metabolic pathways on ASFV replication, Zunji shi et.al

description: African swine fever (ASF), one of the most harmful diseases prevalent in pig farms nowadays, caused by the African swine fever virus (ASFV) that cause enormous economic losses. Viremia usually develops within a few days after ASFV infection. However, the metabolic changes in pig serum after ASFV infection remain unclear. In this study, serum samples collected from ASFV-infected pig at different times were analyzed using pseudotargeted metabolomics method. Metabolomic analysis revealed 225 metabolites decreased and 65 metabolites increased in serum collected in ASFV infected 5 days post-infection (dpi), 254 metabolites decreased and 58 metabolites increased in serum collected ASFV infected 10 dpi. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of the significant changed metabolites indicated that dopaminergic synapse has the highest rich factor in both ASFV5 (ASFV infected 5 dpi) VS ASFV0 (ASFV infected 0 dpi) and ASFV10 (ASFV infected 10 dpi) VS ASFV0.
DOI: 10.6084/m9.figshare.12344453.v1
title: ATADS-DATA

description: this data was associated with the paper named psychometri properties of the chinese version f the attitudes toward accompanied driving scale and its relationship with driving styles<br>
DOI: 10.6084/m9.figshare.20452560.v1
title: Dataset: The Problem with Pressures for Christians

description: An open dataset of (<em>N</em>=828) students from Christian and secular environments with data values for perceptions of religious pressures, religious doubts, religious/spiritual relatedness, and religious/spiritual self-mastery. This dat is available under a CC0 license.
DOI: 10.25442/hku.20462994.v1
title: Countries that have signed MoUs in the Belt and Road Initiative (BRI)

description: Description This dataset contains both tabular data and the geometry of 149 countries that have signed the Memorandum of Understandings (MoU) with China to cooperate in the BRI framework up until March 2022. An interactive view of this dataset: Link Source Data were collected from Belt and Road Portal, developed by China Economic Information Service, State Information Center. The geospatial features, including polygons and boundaries of regions, are sourced from Natural Earth, Admin 0 – Countries version 5.1.1 (Published on 12 May 2022). For metadata, such as data description and available methods for geospatial data processing, please read the readme.pdf. Terms of use This dataset features in a collection of geospatial data "Geo-mapping databases for the Belt and Road Initiative". To cite this work, available citation styles can be found here: https://doi.org/10.6084/m9.figshare.c.6076193
DOI: 10.6084/m9.figshare.28732151.v1
title: DADA2_taxonomy

description: Taxonomy assignment with DADA2 in R and data export for further filtering of samples with the decontam package in Qiime2.
DOI: 10.17632/bnvf9jdmyb
title: Data Set: Dynamic Ambulatory Care Scheduling Problem

description: This repository includes ten test instances, one real instance, and an InputReader Python file used in the "Dynamic ambulatory care scheduling problem." This data set can be used for future comparisons of the optimization algorithms developed for ambulatory care scheduling problems, especially for geographically distributed health centers.
DOI: 10.17632/t4fg833bf4
title: Rinophyma

description: Rinophyma
DOI: 10.6084/m9.figshare.5729337.v1
title: Old version of wimu on gitHub

description: old version
DOI: 10.6084/m9.figshare.12435614.v1
title: Data of Carbapenem study.xlsx

description: the Data describe the carbapenem resistance and resistance genes among Gram negative bacteria isolated from hospitalized patients in Khartoum state between 2016 and 2017.
DOI: 10.6084/m9.figshare.5353480.v1
title: Result of analysis with Metascape (Gene List)

description: Metascape (http://metascape.org/) was used for the gene set enrichment analysis. A gene list for metascape analysis was generated from the output of cuffdiff program, in which 235 genes judged as ‘significantly differentially expressed’ (p&lt;0.05) in cuffdiff output (gene_exp.diff) were indicated.
DOI: 10.6084/m9.figshare.11704071.v2
title: ENABLING SMARTPHONE PUSH NOTIFICATIONS: THE EFFECT OF A FRAMED OPT-IN REQUEST

description: This dataset allow to examine the influence of two different approaches for framing this opt-in request based on the likelihood of the user accepting it: focusing on the experiential benefits the user would eventually receive through the information provided by the push notifications (moderated by the personal involvement with the app) and focusing on the social proof aspect, i.e. the behaviour of the majority of app users (moderated by the user’s susceptibility to interpersonal influence). Variables are 7-Likert scales.
DOI: 10.6084/m9.figshare.28280339.v3
title: source data for chemical experiments and theoretical calculations .xlsx

description: source data for chemical experiments and theoretical calculations.
DOI: 10.6084/m9.figshare.28464452.v1
title: BHS.zip

description: xcxccsfsfsfs
DOI: 10.17632/z2438jkdtv
title: Biomarker proxies for redox-controlled biodegradation: Deciphering organic matter preservation and carbon cycling

description: The Table S1 for the article of "Biomarker proxies for redox-controlled biodegradation: Deciphering organic matter preservation and carbon cycling".
DOI: 10.6084/m9.figshare.11618217.v1
title: Supplementary Material for: Interrogation of the Multiple Sclerosis Prodrome Using High-Dimensional Health Data

description: <b><i>Background:</i></b> There is growing evidence of a prodromal period in multiple sclerosis (MS). A better understanding of the prodrome may facilitate prompt recognition and treatment of MS as well as narrowing of the etiologically relevant ­period when searching for MS risk factors. <b><i>Objectives:</i></b> To explore and further delineate the MS prodrome, we used statistical learning techniques to examine associations of physician-generated diagnostic codes and prescription medication classes in the 5 years before the first demyelinating-related claim for MS cases and matched population controls. <b><i>Methods:</i></b> In this matched cohort study, we accessed data from linked health administrative hospital, physician, and prescription databases from British Columbia, Canada, between 1996 and 2013. We focused on 7 medication classes previously identified as associated with the MS prodrome: urinary anti-spasmodics, glucocorticoids, muscle relaxants, anti-epileptics, dopa-derivatives, benzodiazepine, and antivertigo preparations. Diagnostic codes associated with the use of each medication class were first identified using LASSO logistic regression analyses in two-thirds of the cohort and then validated using multivariate logistic regressions in the remaining cohort. <b><i>Results:</i></b> Our analyses included 4,862 MS cases and 22,649 controls. Although the identified diagnostic codes showed fair to good predictive performance in 6 medication classes (C-index = 0.712–0.858), these codes failed to fully explain the higher usage of these medications by the MS cases. Compared to controls of the same age, sex, and diagnostic codes, MS cases had higher odds of filling a prescription for antivertigo preparations (adjusted OR [aOR] 2.48; 95% CI 1.92–3.19), anti-epileptics (aOR 2.34; 1.90–2.90), glucocorticoids (aOR 1.76; 1.52–2.03), urinary anti-spasmodics (aOR 1.72; 1.20–2.46), and muscle relaxants (aOR 1.33; 1.13–1.56). <b><i>Conclusions:</i></b> We observed markedly higher use of specific medications in MS cases in the 5 years before the first demyelinating claim. The overrepresentation of specific medications in MS cases, which was not fully explained by the physician diagnoses, may represent a signature of the MS prodrome.
DOI: 10.6084/m9.figshare.1009215.v1
title: Life history traits and maximum intrinsic population growth rate of 107 chondrichthyan species

description: All apart from two rows of these data were originally collated and reported by: García VB, Lucifora LO, Myers RA. 2008. The importance of habitat and life history to extinction risk in sharks, skates, rays and chimaeras. Proceedings of the Royal Society of London, B 275: 83-89. We have added the basking shark Cetorhinus maximus data from: Pauly D. 2002. Growth and mortality of the Basking Shark Cetorhinus maximus and their implications for management of Whale Sharks Rhincodon typus. In Proceedings of the international seminar and workshop, Sabah, Malaysia, July 1997, Fowler SL, Reed TM, Dipper FA (eds). IUCN Species Survival Commission Shark Specialist Group: Gland, Switzerland and Cambridge, UK; 199-208. And data on a genric manta ray (Manta spp.) as reported originally as: Dulvy NK, Pardo SA, Simpfendorfer CA, Carlson JK. 2013. Diagnosing the dangerous demography of manta rays using life history theory. PeerJ PrePrints 1: e162v161. This prepreint has since been published as a paper at PeerJ: Dulvy NK, Pardo SA, Simpfendorfer CA, Carlson JK. 2014. Diagnosing the dangerous demography of manta rays using life history theory. PeerJ 2: e400; doi:10.7717/peerj.400 We urge the readers to read the original papers especialy the Garcia et al. paper to understand how these data were put together.
DOI: 10.6084/m9.figshare.17294195.v1
title: Site specific eigenvalues and dynamical structure factors

description: This database contains the most primitive information related to spectrum: the final energies for the excited state and the ground state, the excitation energy, site multiplicity, the eigenvalues and the dynamical structure factors, i.e. the square of the absolute values of transition matrix element.
DOI: 10.6084/m9.figshare.21614721.v1
title: Genome annotation of Hongli (Castanea mollissima Blume)

description: The annotation file of the genome of Hongli, a variety of Chinese chestnut (Castanea mollissima Blume)
DOI: 10.6084/m9.figshare.17912510.v2
title: data for Systematic Evaluation of the Relationship Between Chorus Waves and Electron Butterfly Distribution Using Van Allen Probes Observations: Potential Evidence for Nonlinear Interactions

description: Systematic Evaluation of the Relationship Between Chorus Waves and Electron Butterfly Distirbution Using Van Allen Probes Observations: Potential Evidence for Nonlinear Interactions
DOI: 10.6084/m9.figshare.18480722.v2
title: Images of wheat grains (used in "Wheat grain width: A clue for re-exploring visual indicators of grain weight")

description: This image archive includes 180 images taken from the harvested grains of monocultures and mixtures of four early- to middle ripening wheat cultivars grown under well- and deficit-irrigation conditions during two growing seasons. This archive was used in the preprint entitled:<br>"Wheat grain width: A clue for re-exploring visual indicators of grain weight"<br>(https://www.biorxiv.org/content/10.1101/2021.10.13.464205v2)
DOI: 10.6084/m9.figshare.23561439.v2
title: Source Data files to reproduce figures in nnSVG paper

description: Source Data files to reproduce figures in nnSVG paper (Weber et al. 2023, "nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes", Nature Communications, preprint also available from bioRxiv at https://www.biorxiv.org/content/10.1101/2022.05.16.492124v3). Files are provided as R objects (.RData files), which can be loaded within R scripts in our reproducible code repository available from GitHub at https://github.com/lmweber/nnSVG-analyses.
DOI: 10.6084/m9.figshare.24712842.v1
title: The Role of miR-155 in Inflammation and Mechanosensing during Intervertebral Disc Degeneration

description: The dataset enclosed is discussed and displayed in the scientific article 'The Role of miR-155 in Inflammation and Mechanosensing during Intervertebral Disc Degeneration'
DOI: 10.17632/4cy5cz3xmw
title: Data for: Learner Participation Profiles in an Asynchronous Online Collaboration Context

description: data for modeling learner participation
DOI: 10.6084/m9.figshare.19809052.v2
title: Strong ground motion datasets of the Mw7.8 2015 Gorkha earthquake aftershocks obtained at the seismograph array in the Kathmandu Valley, Nepal

description: These datasets contain the strong ground motion for 18 aftershocks (5.0 &lt; <em>M</em> &lt; 7.3) of the <em>M</em><sub>w</sub> 7.8 2015 Gorkha earthquake collected at the seismograph array in the Kathmandu Valley, Nepal. If you use this data, please cite the following paper: Michiko Shigefuji, Nobuo Takai, Subeg Bijukchhen, Masayoshi Ichiyanagi, Sudhir Rajaure, Megh Raj Dhital, Lalu Prasad Paudel, Tsutomu Sasatani. Strong ground motion data of the 2015 Gorkha Nepal earthquake sequence in the Kathmandu Valley. <em>Sci. Data</em> <strong>9</strong>, 513 (2022) . https://doi.org/10.1038/s41597-022-01634-6 <br> <br> <br>
DOI: 10.6084/m9.figshare.16910800.v1
title: Geochemical characterisation of offshore New Zealand phosphorites, and mechanisms for their formation [Research Data]

description: Major and trace element data of phosphorite nodules from offshore New Zealand deposits. <br>Measured using X-ray fluorescence and Inductively Coupled Plasma Mass Spectrometry. <br>CC BY-NC (Attribution-NonCommercial)<br><br>References:<br>Frontin-Rollet GE, Handler MR, Wysoczanski RJ, Gazley MF, Hickey CW. 2022. Geochemical characterisation of offshore New Zealand phosphorites, and mechanisms for their formation. Marine Geology. 445:106751.<br>Frontin-Rollet. 2017. The Geochemistry and Ecotoxicity of Offshore New Zealand Phosphorites [MSc Thesis] Victoria University of Wellington.<br>
DOI: 10.6084/m9.figshare.23902305.v1
title: Procurement corruption

description: The Stata files above are for: Ugandan and Kenyan procurement datasets and the do-files.
DOI: 10.6084/m9.figshare.4244171.v2
title: MDD Patients and Healthy Controls EEG Data (New)

description: 'H' stands for Healthy Controls'MDD' stands for Major Depressive Disorder 'EC' stands for eyes closed'EO' stands for eyes open'TASK' stands for P300 data
DOI: 10.21942/uva.25714248.v2
title: Subaddressing (aka Plus Adressing): tags & syntax

description: Subaddressing is an industry-defined way to support dynamic, disposable recipient (not sender) email addresses for mailboxes.
DOI: 10.17632/by7b2dj2fh
title: Dataset on Improved Maize Seeds Adoption in the Katangese Copperbelt

description: The dataset is crucial for understanding the drivers and barriers to the adoption of agricultural technologies among smallholder farmers in the Katangese Copperbelt. It provides demographic and socioeconomic characteristics of farmers associated with the adoption of improved maize seeds and includes information on the reasons behind this adoption. A survey questionnaire was used to collect data during face-to-face interviews with 300 farmers. We hypothesized that farmers' socio-economic profiles and their perceptions of climate change can influence the adoption of improved maize seeds, thereby enhancing agricultural production and building resilience to climate change. A significance level of α &lt; 0.05 was used as the criterion for statistical significance. Notable findings show that education level, membership in farmers’ organizations, financial support, and off-farm employment are significant predictors of improved maize seed adoption among Katangese smallholder farmers.
DOI: 10.6084/m9.figshare.21671189.v1
title: Increased interaction between endoplasmic reticulum and mitochondria following sleep deprivation - EM data

description: Electron microscope tomographs obtained in sleeping (S, n=4) and sleep deprived mice (SD, n=4; 6h of SD with novel objects). Images of somas of cortical neurons of layer II-III of frontal cortex. Images were acquired using serial block-face electron microscope Zeiss Gemini SEM 450 (Carl Zeiss NTS Ltd) equipped with a backscattered electron detector.
DOI: 10.6084/m9.figshare.26365405.v1
title: Nothing to hide dataset July 2024

description: This dataset gives the individual responses to special questions from the New York Fed Survey of Consumer Expectations (SCE), as used in the paper "Nothing to hide? Gender and age differences in willingness to share data". For the working paper version of the paper, see https://www.bis.org/publ/work1187.htm.
DOI: 10.17608/k6.auckland.14576037.v1
title: Technophobia dataset

description: This is a dataset on "technophobia" a socio-psychological construct, which is experienced by consumers who feel overloaded by the complexity of technology-related products. The dataset was used in the publications below and is available for use in replication and extension studies. <br><br>Sinkovics, Rudolf R., Barbara Stöttinger, Bodo B. Schlegelmilch, and Sundaresan Ram (2002), "Reluctance to use technology-related products: Development of a technophobia scale," Thunderbird International Business Review, 44 (4), 477-494. https://doi.org/10.1002/tie.10033<br><br>Salzberger, Thomas and Rudolf R. Sinkovics (2006), "Reconsidering the problem of data equivalence in international marketing research: Contrasting approaches based on CFA and the Rasch model for measurement," International Marketing Review, 23 (4), 390-417. https://doi.org/10.1108/02651330610678976<br><br>
DOI: 10.17632/jfym9t92sz
title: Data for: Emplacement and metamorphism of the mafic rocks from the Chencai terrane within the Cathaysia Block: Implications for the Paleozoic orogenesis of the South China Block

description: The File "Table-Plot" included all the original data used in the paper. The other files are the Coreldraw X6 files of each sample and they include zirocn CL images, Transmitted and reflected light images. All the analyzed zircon spots are clearly marked in these files.