DOI: 10.5281/zenodo.3946558
title: MESINESP: Post-workshop datasets. Silver Standard and annotator records

description: <em><strong>Please use the MESINESP2 corpus (the second edition of the shared-task) since it has a higher level of curation, quality and is organized by document type (scientific articles, patents and clinical trials).</strong></em> The MESINESP (Spanish BioASQ track, see https://temu.bsc.es/mesinesp) Challenge was held in May-June 2020, and as a result of a strong participation and the manual annotation of an evaluation dataset, two additional datasets are released now: 1) "all_annotations_withIDsv3.tsv" contains a tab-separated file with all manual annotations (both validated and non-validated) of the evaluation dataset prepared for the competition. It contains the following fields: annotatorName: Human annotator id documentId: Document ID in the source database decsCode: A DeCS code added to it or validated timestamp: When it was added validated: if it was validated at that point by another annotator, or not yet SpanishTerm: The Spanish descriptor corresponding to the DeCS code mesinespId: The internal document id in the distributed evaluation file dataset: if part of the evaluation or the test sets source: which database it was taken from <em><strong>Example:</strong></em> <strong>annotatorName documentId decsCode timestamp validated SpanishTerm mesinespId dataset source</strong><br> A7 biblio-1001069 6893 2020-01-17T11:27:07.000Z false caballos mesinesp-dev-671 dev LILACS<br> A7 biblio-1001069 4345 2020-01-17T11:27:12.000Z false perros mesinesp-dev-671 dev LILACS 2) A "Silver Standard" created from the 24 system runs submitted by 6 participating teams. It contains each of the submitted DeCS code for each document in the test set, as well as other information that can help ascertain reliability and source for anyone that wants to use this dataset to enrich their training data. It contains more that 5.8 million datapoints, and is structured as follows SubmissionName: Alias of the team that submitted the run REALdocumentId: The real id of the document mesinespId: The mesinesp assigned id in the evaluation dataset docSource: The source database decsCode: the DeCS code assigned to it by the team's system SpanishTerm: The Spanish descriptor of the DeCS code MiF: The Micro-f1 scored by that system's run MiR: The Micro-Recall scored by that system's run MiP: The Micro-Precision scored by that system's run Acc: The Accuracy scored by that system's run consensus: The number of runs where that DeCS code was assigned to this document by the participating teams (max. is 24) <strong><em>Example:</em></strong> <strong>SubmissionName REALdocumentId mesinespId docSource decsCode SpanishTerm MiF MiR MiP Acc consensus</strong><br> AN ibc-177565 mesinesp-evaluation-00001 IBECS 28567 riesgo 0.2054 0.1930 0.2196 0.1198 4<br> AN ibc-177565 mesinesp-evaluation-00001 IBECS 15335 trabajo 0.2054 0.1930 0.2196 0.1198 4<br> AN ibc-177565 mesinesp-evaluation-00001 IBECS 33182 conocimiento 0.2054 0.1930 0.2196 0.1198 7<br> <strong>For citation and a detailed description of the Challenge, please cite:</strong><br> <em>Anastasios, Nentidis and Anastasia, Krithara and Konstantinos, Bougiatiotis and Martin, Krallinger and Carlos, Rodriguez-Penagos and Marta, Villegas and Georgios, Paliouras.</em> <strong>Overview of BioASQ 2020: The eighth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering</strong> (2020). Proceedings of the Eleventh International Conference of the CLEF Association (CLEF 2020). Thessaloniki, Greece, September 22--25 <strong>Citation</strong> @inproceedings{durusan2019overview,<br> title={Overview of BioASQ 2020: The eighth BioASQ challenge on Large-Scale Biomedical Semantic Indexing and Question Answering},<br> author={Anastasios, Nentidis and Anastasia, Krithara and Konstantinos, Bougiatiotis and Martin, Krallinger and Carlos, Rodriguez-Penagos and Marta, Villegas and Georgios, Paliouras},<br> booktitle={Experimental IR Meets Multilinguality, Multimodality, and Interaction Proceedings of the Eleventh International Conference of the CLEF Association (CLEF 2020), Thessaloniki, Greece, September 22--25, 2020, Proceedings},<br> volume={12260},<br> year={2020},<br> organization={Springer}<br> } Copyright (c) 2020 Secretaría de Estado de Digitalización e Inteligencia Artificial
description: Funded by the Plan de Impulso de las Tecnologías del Lenguaje (Plan TL).