cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6444158.v1
title: Additional file 5: of Comparative transcriptomic and proteomic analyses reveal upregulated expression of virulence and iron transport factors of Aeromonas hydrophila under iron limitation

description: Excel S5. The enriched DEPs KEGG terms between control and iron-limitation groups using bioinformatics methods. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.6968003
title: Numerical modeling of preloaded filling spiral case structure

description: Abstract A spiral case with its steel spiral case (SSC) being embedded in reinforced concrete under a pressurized condition is called a preloaded filling spiral case structure (PFSCS) in a hydropower plant. As a steel-concrete composite structure, a PFSCS is designed to work reliably. The non-uniform gap and contact nonlinearity between the SSC and the surrounding mass concrete have a great effect on the bearing mechanism of the composite structure. However, the description of the gap and contact nonlinearity in a PFSCS is a tough work. With the aim of efficiently describing the evolution process of the non-uniform gap and contact nonlinearity, we performed an experimental investigation and proposed a novel numerical simulation technique for structural finite element analyses (FEA) of PFSCSs. In the technique, the gap and contact nonlinearity as well as the construction process and operation process of a PFSCS are taken into account. A friction-contact model is used to simulate the sliding of the SSC against the concrete. A plasticity damage model is employed to describe the concrete. The development of the gap, contact status between the steel liner and the surrounding concrete, stresses of the steel liner and the steel bars, as well as the concrete cracking time and crack pattern, are presented in this work. The FEA results agree well with the experimental results. The agreement provides evidence that the applicability and competence of the proposed technique are valid and satisfactory.
DOI: 10.6084/m9.figshare.6444098.v1
title: Additional file 2: of Comparative transcriptomic and proteomic analyses reveal upregulated expression of virulence and iron transport factors of Aeromonas hydrophila under iron limitation

description: Excel S2. The enriched DEGs GO terms between control and iron-limitation groups using bioinformatics methods. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.6443837
title: Additional file 3: of Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress

description: Table S2. The collective percent of phenotypic variation explained by main-effect QTL and QE interactions for the trait. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6443837.v1
title: Additional file 3: of Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress

description: Table S2. The collective percent of phenotypic variation explained by main-effect QTL and QE interactions for the trait. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6443858
title: MOESM2 of Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating Î˛-proteobacterium Pandoraea sp. ISTKB

description: Additional file 2: Table S9. Detail of genomic islands identified in Pandoraea sp. ISTKB genome.
DOI: 10.6084/m9.figshare.6443876.v1
title: MOESM3 of Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating Î˛-proteobacterium Pandoraea sp. ISTKB

description: Additional file 3: Table S10. Other differentially expressed proteins (related to PHA metabolism, dehydrogenase, reductases, transferases, esterases and hydrolases) on kraft lignin.
DOI: 10.5281/zenodo.10650251
title: USV, buoy, modelled MLD and meteorological data from Fragoso et al 2024 JGR Oceans
DOI: 10.6084/m9.figshare.20454748.v1
title: Additional file 1 of Early prediction of noninvasive ventilation failure after extubation: development and validation of a machine-learning model

description: Additional file 1: Table S1. Features extracted from the eICU-CRD database and the key features selected
DOI: 10.6084/m9.figshare.20454748
title: Additional file 1 of Early prediction of noninvasive ventilation failure after extubation: development and validation of a machine-learning model

description: Additional file 1: Table S1. Features extracted from the eICU-CRD database and the key features selected
DOI: 10.6084/m9.figshare.13257456
title: Additional file 3 of Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

description: Additional file 3. Cell wall related DEGs identified in the SE of E. camaldulensis and E. grandis x urophylla.
DOI: 10.6084/m9.figshare.13257462
title: Additional file 5 of Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

description: Additional file 5. Gene variants specifically identified in E. camaldulensis.
DOI: 10.6084/m9.figshare.6968048.v1
title: Clinical features of carriers of reciprocal chromosomal translocations involving chromosome 2: report of nine cases and review of the literature

description: ABSTRACT Objective: To explore the clinical features of carriers of chromosome 2 translocations, enabling informed genetic counseling of these patients. Materials and Methods: Eighty-two male carriers of a translocation who were infertile or receiving fertility counseling were recruited. Cytogenetic analyses were performed using G-banding. A search of PubMed was performed to determine whether the identified translocations on chromosome 2 are involved in male infertility. The relationships of translocation breakpoints with male infertility and recurrent pregnancy loss were analyzed. Results: Of the 82 translocation carriers, 9 (11%) were carriers of a chromosome 2 translocation. Four cases had oligozoospermia or infertility, while five had normal semen. In an analysis of the literature, 55 patients who were carriers of chromosome 2 translocations were also reviewed. Breakpoints at 2p13 and 2q31 were observed in six patients each, and were the most common. Breakpoints at 2p23, 2p13, 2p11.2, 2q31, and 2q37 were associated to both pre-gestational and gestational infertility, while other breakpoints were associated with gestational infertility. Conclusions: All breakpoints at chromosome 2 were correlated with gestational infertility. Carriers of chromosome 2 translocations should therefore receive counseling to continue with natural conception and use of different technologies available via assisted reproductive technology, such as preimplantation genetic diagnosis.
DOI: 10.6084/m9.figshare.6443834.v1
title: Additional file 3: of Genome and epigenome analysis of monozygotic twins discordant for congenital heart disease

description: Table S3. Sequence variations reported related to VSD. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.6444188
title: Additional file 3: of Epidemiological shift and geographical heterogeneity in the burden of leptospirosis in China

description: The distribution of age-, sex-, and geographically-specific years of life lost (YLLs) estimates in China, 2005â 2015. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.6444188.v1
title: Additional file 3: of Epidemiological shift and geographical heterogeneity in the burden of leptospirosis in China

description: The distribution of age-, sex-, and geographically-specific years of life lost (YLLs) estimates in China, 2005â 2015. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.25206335
title: <b>The data from Mendelian randomization analysis</b><b> among Gut Microbiota and two types of anemia.</b>

description: We have indicated correlations between gut microbiota and anemia using Mendelian randomization analysis. This analytical approach provides genetic insights into the associations between gut microbiota and both iron deficiency anemia and aplastic anemia, providing novel avenues for disease prevention and intervention.
DOI: 10.6084/m9.figshare.25206335.v1
title: <b>The data from Mendelian randomization analysis</b><b> among Gut Microbiota and two types of anemia.</b>

description: We have indicated correlations between gut microbiota and anemia using Mendelian randomization analysis. This analytical approach provides genetic insights into the associations between gut microbiota and both iron deficiency anemia and aplastic anemia, providing novel avenues for disease prevention and intervention.
DOI: 10.6084/m9.figshare.25206353
title: Figure data of climate change perceptions of farmers and herders on the Tibetan Plateau

description: Analysis data in the research of perceptions of climate change by farmers and herders on the Tibetan Plateau.
DOI: 10.6084/m9.figshare.25206353.v1
title: Figure data of climate change perceptions of farmers and herders on the Tibetan Plateau

description: Analysis data in the research of perceptions of climate change by farmers and herders on the Tibetan Plateau.
DOI: 10.6084/m9.figshare.6443903
title: Additional file 7: of Genome and epigenome analysis of monozygotic twins discordant for congenital heart disease

description: Table S5. Overview of RRBS data. (XLS 26 kb)
DOI: 10.6084/m9.figshare.13257459
title: Additional file 4 of Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

description: Additional file 4. Primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.13257462.v1
title: Additional file 5 of Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

description: Additional file 5. Gene variants specifically identified in E. camaldulensis.
DOI: 10.6084/m9.figshare.6968492
title: Additional file 4: of High-density genetic map construction and quantitative trait loci analysis of the stony hard phenotype in peach based on restriction-site associated DNA sequencing

description: Analysis of the SNP polymorphic sites in the parent plants and their individual offspring in peach. (XLSX 21652 kb)
DOI: 10.6084/m9.figshare.6968492.v1
title: Additional file 4: of High-density genetic map construction and quantitative trait loci analysis of the stony hard phenotype in peach based on restriction-site associated DNA sequencing

description: Analysis of the SNP polymorphic sites in the parent plants and their individual offspring in peach. (XLSX 21652 kb)
DOI: 10.6084/m9.figshare.6444113.v1
title: Additional file 3: of Comparative transcriptomic and proteomic analyses reveal upregulated expression of virulence and iron transport factors of Aeromonas hydrophila under iron limitation

description: Excel S3. The enriched DEPs GO terms between control and iron-limitation groups using bioinformatics methods. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.6444137.v1
title: Additional file 4: of Comparative transcriptomic and proteomic analyses reveal upregulated expression of virulence and iron transport factors of Aeromonas hydrophila under iron limitation

description: Excel S4. The enriched DEGs KEGG terms between control and iron-limitation groups using bioinformatics methods. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.22697018.v1
title: Additional file 2 of Identifying yield-related genes in maize based on ear trait plasticity

description: Additional file 2: Table S1. Meteorological characteristics of experimental sites. Table S2. Transgenic lines planted in 2018. Table S3. Transgenic lines planted in 2019. Table S4. Gene Ontology enrichment analysis of all 717 genes from 2018 and 2019. Table S5. Classification of Gene Ontology biological processes. Table S6. Information on candidate regulatory genes associated with good plasticity.
DOI: 10.6084/m9.figshare.13257684
title: Additional file 3 of Integrated metabolomics and transcriptomics study of traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao reveals global metabolic profile and novel phytochemical ingredients

description: Additional file 3. The metabolites from AMM with annotation.
DOI: 10.6084/m9.figshare.13257684.v1
title: Additional file 3 of Integrated metabolomics and transcriptomics study of traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao reveals global metabolic profile and novel phytochemical ingredients

description: Additional file 3. The metabolites from AMM with annotation.
DOI: 10.6084/m9.figshare.25206276.v1
title: Ambulance traffic crashes in Japan: Characteristics of casualties, and efforts to improve ambulance safety

description: Background: An ambulance traffic crash not only leads to injuries among Emergency Medical Service (EMS) professionals but also injures patients or their companions during transportation. We aimed to describe the incidence of ambulance crashes, seating location, and seatbelt use for casualties (i.e., both fatal and non-fatal injuries), ambulance safety efforts, and to identify factors affecting the number of ambulance crashes in Japan. Methods: We conducted a nationwide survey of all fire departments in Japan. The survey queried each fire department about the number of ambulance crashes between January 1, 2017, and December 31, 2019, the number of casualties, their locations, and seatbelt usage. Additionally, the survey collected information on fire department characteristics, including the number of ambulance dispatches, and their safety efforts including emergency vehicle operation training and seatbelt policies. We used regression methods including a zero-inflated negative binomial model to identify factors associated with the number of crashes. Results: Among the 726 fire departments in Japan, 553 (76.2%) responded to the survey, reporting a total of 11,901,210 ambulance dispatches with 1,659 ambulance crashes (13.9 for every 100,000 ambulance dispatches) that resulted in a total of 130 casualties during the 3-year study period (1.1 in every 100,000 dispatches). Among the rear cabin occupants, seatbelt use was limited for both EMS professionals (n= 3/29, 10.3%) and patients/companions (n= 3/26, 11.5%). Only 46.7% of the fire departments had an internal policy regarding seatbelt use. About three-fourths of fire departments (76.3%) conducted emergency vehicle operation training internally. The output of the regression model revealed that fire departments that conduct internal emergency vehicle operation training had fewer ambulance crashes compared to those that do not (odds of being an excessive zero -2.20, 95% CI: -3.6 to -0.8). Conclusion: Two-thirds of fire departments experienced at least one crash during the study period. The majority of rear cabin occupants who were injured in ambulance crashes were not wearing a seatbelt. Although efforts to ascertain seatbelt compliance were limited, Japanese fire departments have attempted a variety of methods to reduce ambulance crashes including internal emergency vehicle operation training, which was associated with fewer ambulance crashes.
DOI: 10.6084/m9.figshare.13257707.v1
title: Additional file 1 of Systemic elucidation on the potential bioactive compounds and hypoglycemic mechanism of Polygonum multiflorum based on network pharmacology

description: Additional file 1. The compounds database of PM.
DOI: 10.6084/m9.figshare.6968531
title: Additional file 6: of High-density genetic map construction and quantitative trait loci analysis of the stony hard phenotype in peach based on restriction-site associated DNA sequencing

description: Discrete genes obtained from QTL regions and the alignment results to GO database and KEGG pathway database. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.13257453.v1
title: Additional file 2 of Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

description: Additional file 2. Differentially expressed genes in the dedifferentiated tissues compared to the differentiated tissues of E. camaldulensis and E. grandis x urophylla.
DOI: 10.6084/m9.figshare.25206392
title: Spectral filtering matrix of spatial-varying non-isotropic Gaussian-based convolution (VGC) filter.

description: Spectral filtering matrix of spatial-varying non-isotropic Gaussian-based convolution (VGC) filter.
DOI: 10.6084/m9.figshare.6444137
title: Additional file 4: of Comparative transcriptomic and proteomic analyses reveal upregulated expression of virulence and iron transport factors of Aeromonas hydrophila under iron limitation

description: Excel S4. The enriched DEGs KEGG terms between control and iron-limitation groups using bioinformatics methods. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.6444185.v1
title: Additional file 2: of Landscape of transcriptional deregulation in lung cancer

description: Table S1. TFs deregulated in each lung cancer dataset. Columns are: DS (dataset), DIR (direction of regulation), TF, lfc (log2 fold change), p (differential t test p value), ntargs (number of targets deregulated) and targs (targets deregulated). Table S2. GO terms enriched in targets of each TF. Columns are: DS (dataset), DIR (direction of regulation), TF, GO, Term, Annotated (Number of genes annotated and recognized in GO term), GOI (Number of deregulated targets for each TF), Hits (TF targets annotated in the GO term), OR (odds ratio), pFisher (Fisherâ s Exact Test p value) and Genes (Gene Hits). Table S3. Evaluation of SVM parameters. Different parameter combinations were used to set up the OC-SVM model for training. Each model was used to predict a TF network, which was then applied to the LUSC dataset to see if the two positive control TFs (TP63 and SOX2) can be recalled. Table S4. Evaluation of differential analysis parameters. Several combinations of log2fc and q value thresholds were applied to determine up- and down-regulated genes in the LUSC dataset, which are further used for TF identification. The identified TFs are compared with each other to evaluate the procedural robustness upon the various parameter choices. Top left and right: summarizing tables; Bottom: detailed tables of TFs identified in each parameter combination. (XLS 3594 kb)
DOI: 10.6084/m9.figshare.13257707
title: Additional file 1 of Systemic elucidation on the potential bioactive compounds and hypoglycemic mechanism of Polygonum multiflorum based on network pharmacology

description: Additional file 1. The compounds database of PM.
DOI: 10.6084/m9.figshare.12211346.v1
title: Additional file 1 of REPIC: a database for exploring the N6-methyladenosine methylome

description: Additional file 1: Table S1. The list of sample information for the 339 input-IP paired samples. Table S2. The data set list of histone ChIP-seq peaks from ENCODE. Table S3. The data set list of DNase-seq peaks from ENCODE. Table S4. The genome assembly versions and gene annotation sources of 11 organisms. Table S5. The descriptions of tracks in the genome browser.
DOI: 10.6084/m9.figshare.12211418.v1
title: Additional file 7 of Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection

description: Additional file 7: Table S1. Detailed information for the 98 annotated co-abundance groups.
DOI: 10.6084/m9.figshare.6968477.v1
title: Additional file 3: of High-density genetic map construction and quantitative trait loci analysis of the stony hard phenotype in peach based on restriction-site associated DNA sequencing

description: 6150 SNP markers identified after filtering used to construct the linkage map in peach. (XLSX 2185 kb)
DOI: 10.6084/m9.figshare.6444158
title: Additional file 5: of Comparative transcriptomic and proteomic analyses reveal upregulated expression of virulence and iron transport factors of Aeromonas hydrophila under iron limitation

description: Excel S5. The enriched DEPs KEGG terms between control and iron-limitation groups using bioinformatics methods. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.13257716.v1
title: Additional file 4 of Systemic elucidation on the potential bioactive compounds and hypoglycemic mechanism of Polygonum multiflorum based on network pharmacology

description: Additional file 4. The detailed information about 38 related pathways.
DOI: 10.6084/m9.figshare.25206276
title: Ambulance traffic crashes in Japan: Characteristics of casualties, and efforts to improve ambulance safety

description: Background: An ambulance traffic crash not only leads to injuries among Emergency Medical Service (EMS) professionals but also injures patients or their companions during transportation. We aimed to describe the incidence of ambulance crashes, seating location, and seatbelt use for casualties (i.e., both fatal and non-fatal injuries), ambulance safety efforts, and to identify factors affecting the number of ambulance crashes in Japan. Methods: We conducted a nationwide survey of all fire departments in Japan. The survey queried each fire department about the number of ambulance crashes between January 1, 2017, and December 31, 2019, the number of casualties, their locations, and seatbelt usage. Additionally, the survey collected information on fire department characteristics, including the number of ambulance dispatches, and their safety efforts including emergency vehicle operation training and seatbelt policies. We used regression methods including a zero-inflated negative binomial model to identify factors associated with the number of crashes. Results: Among the 726 fire departments in Japan, 553 (76.2%) responded to the survey, reporting a total of 11,901,210 ambulance dispatches with 1,659 ambulance crashes (13.9 for every 100,000 ambulance dispatches) that resulted in a total of 130 casualties during the 3-year study period (1.1 in every 100,000 dispatches). Among the rear cabin occupants, seatbelt use was limited for both EMS professionals (n= 3/29, 10.3%) and patients/companions (n= 3/26, 11.5%). Only 46.7% of the fire departments had an internal policy regarding seatbelt use. About three-fourths of fire departments (76.3%) conducted emergency vehicle operation training internally. The output of the regression model revealed that fire departments that conduct internal emergency vehicle operation training had fewer ambulance crashes compared to those that do not (odds of being an excessive zero -2.20, 95% CI: -3.6 to -0.8). Conclusion: Two-thirds of fire departments experienced at least one crash during the study period. The majority of rear cabin occupants who were injured in ambulance crashes were not wearing a seatbelt. Although efforts to ascertain seatbelt compliance were limited, Japanese fire departments have attempted a variety of methods to reduce ambulance crashes including internal emergency vehicle operation training, which was associated with fewer ambulance crashes.
DOI: 10.6084/m9.figshare.12211343
title: Additional file 11 of Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection

description: Additional file 11: Table S2. Detailed information for the 2278 KEGG orthology terms enriched in the GX.SG group compared with the GX.DG or NC groups.
DOI: 10.6084/m9.figshare.22697163
title: Additional file 1 of Comprehensive single-cell transcriptomic and proteomic analysis reveals NK cell exhaustion and unique tumor cell evolutionary trajectory in non-keratinizing nasopharyngeal carcinoma

description: Additional file 1. NK-NPC proteomic results
DOI: 10.48432/ykujns
title: LiDAR survey on 324.98 hectares in Jamari, Rondônia, Brasil in 2014.

description: The LiDAR data Floresta Nacional do Jamari (JAM_A04_2014_LiDAR) refers to the survey carried out in Jamari National Forest, Rondonia state, Brazil, as part of the Brazilian Forest Service monitoring program. The partnership between the Brazilian Forest Service and the Brazilian Agricultural Research Corporation (Embrapa) has made available high accuracy LiDAR data for the development of new methodologies and to expand the knowledge about forest management in concession areas. This dataset contains: a. Classified LAS formatted point cloud data – compressed LAS files: LAZ format (vendor delivered); b. Digital Terrain Model (vendor delivered); c. Map of LiDAR coverage area and block boundaries; “Data were acquired by the Sustainable Landscapes Brazil project supported by the Brazilian Agricultural Research Corporation (Embrapa), the US Forest Service, USAID and the US Department of State."