cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9987227.v1
title: MOESM18 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 18. List of 272 genes selected by integrating the list of transcriptomic candidates and positional information from the meta-QTL analysis. Positional information (Chr and position) derived by map anchoring to the genome, functional annotation and information about the transcriptomic study in which each candidate was first reported are included for each selected candidate in the table. TableÂ 5 represents a subset of this table, including, among these candidates, those involved in signalling, development or regulation of gene expression.
DOI: 10.6084/m9.figshare.9987212
title: MOESM16 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 16. Number of differentially expressed biomarker genes obtained by comparison of expression levels at each time point before visual veraison and next one, until visual veraison. Each time point is expressed as days before visual veraison. Number of early â biomarkersâ of veraison transition as defined in [48] found as differentially expressed across intervals are given. The interval across which the highest number of biomarkers was differentially expressed represents the timing when early transcriptomic rearrangement associated to the veraison starts to occur in each year.
DOI: 10.6084/m9.figshare.9987218.v1
title: MOESM17 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 17. Whole list of transcriptomic candidates derived by studies of expression profiles along berry development [44], [46], [48] including positional information and functional annotation. Information about the original study in which they were selected and about their eventual prioritization through network analysis of expression profiles (“switch genes”) or selection as “biomarkers” according to profile analysis in original studies is included.
DOI: 10.6084/m9.figshare.9987221.v1
title: MOESM1 of Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer

description: Additional file 1. KEGG pathway analysis of genes differentially expressed circRNAs targeting.
DOI: 10.6084/m9.figshare.9987212.v1
title: MOESM16 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 16. Number of differentially expressed biomarker genes obtained by comparison of expression levels at each time point before visual veraison and next one, until visual veraison. Each time point is expressed as days before visual veraison. Number of early â biomarkersâ of veraison transition as defined in [48] found as differentially expressed across intervals are given. The interval across which the highest number of biomarkers was differentially expressed represents the timing when early transcriptomic rearrangement associated to the veraison starts to occur in each year.
DOI: 10.6084/m9.figshare.9987200
title: MOESM14 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 14. Meta-QTLs calculated from 28 overlapping QTLs from 5 independent studies for the well characterized anthocyanin colour trait mapping at the colour locus on LG2.
DOI: 10.6084/m9.figshare.9987203
title: MOESM15 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 15 Lists of candidate genes in the 7 anthocyanin meta-QTLs intervals identified by meta-QTLs analysis as reported in Additional file 14. Positional information were derived by map anchoring to the genome and CRIBIv1 annotation. This list includes the VvMYBA1 and VvMYBA2 genes well known for involvement in anthocyanin biosynthesis and colour determination in grape, thus supporting the meta-QTLs approach applied in this study.
DOI: 10.6084/m9.figshare.9987203.v1
title: MOESM15 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 15 Lists of candidate genes in the 7 anthocyanin meta-QTLs intervals identified by meta-QTLs analysis as reported in Additional file 14. Positional information were derived by map anchoring to the genome and CRIBIv1 annotation. This list includes the VvMYBA1 and VvMYBA2 genes well known for involvement in anthocyanin biosynthesis and colour determination in grape, thus supporting the meta-QTLs approach applied in this study.
DOI: 10.6084/m9.figshare.9987194
title: MOESM8 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 8. 5 â Collapsed final outcome dataset after Part 5.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987197
title: Additional file 2: of First insights into the genetic characteristics and drug resistance of Mycobacterium tuberculosis population collected during the first national tuberculosis prevalence survey of Lao PDR (2010–2011)

description: Table S1. Complete data (clinical, epidemiological, demographic and genetic data) for the 222 Mycobacterium tuberculosis isolates included in this study. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.9987200.v1
title: MOESM14 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 14. Meta-QTLs calculated from 28 overlapping QTLs from 5 independent studies for the well characterized anthocyanin colour trait mapping at the colour locus on LG2.
DOI: 10.6084/m9.figshare.9987191
title: MOESM13 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 13. Lists of candidate genes in ver/ph meta-QTLs intervals with the corresponding genomic positions derived by anchoring to the genome and CRIBIv1 annotation. GO annotation was included only for genes with GOs related to expression regulation, signalling or development (GO:0000166, GO:0003676, GO:0003677, GO:0003682, GO:0003700, GO:0005102, GO:0005634, GO:0007154, GO:0007165, GO:0007275, GO:0009653, GO:0009719, GO:0009791, GO:0009908, GO:0016301, GO:0030154, GO:0038023, GO:0040007) representing most relevant positional candidates for veraison regulation according to functional annotation.
DOI: 10.6084/m9.figshare.9987197.v1
title: Additional file 2: of First insights into the genetic characteristics and drug resistance of Mycobacterium tuberculosis population collected during the first national tuberculosis prevalence survey of Lao PDR (2010–2011)

description: Table S1. Complete data (clinical, epidemiological, demographic and genetic data) for the 222 Mycobacterium tuberculosis isolates included in this study. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.9987185
title: MOESM7 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 7. 4 â Final Panel dataset after Part 4.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987194.v1
title: MOESM8 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 8. 5 â Collapsed final outcome dataset after Part 5.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987176
title: MOESM6 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 6. 3 â Final Panel dataset with pill counts after Part 3.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987179
title: MOESM12 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 12. Lists of candidate genes in ver meta-QTLs intervals with the corresponding genomic positions derived by anchoring to the genome and CRIBIv1 annotation. GO annotation was included only for genes with GOs related to expression regulation, signalling or development (GO:0000166, GO:0003676, GO:0003677, GO:0003682, GO:0003700, GO:0005102, GO:0005634, GO:0007154, GO:0007165, GO:0007275, GO:0009653, GO:0009719, GO:0009791, GO:0009908, GO:0016301, GO:0030154, GO:0038023, GO:0040007) representing most relevant positional candidates for veraison regulation according to functional annotation.
DOI: 10.6084/m9.figshare.9987176.v1
title: MOESM6 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 6. 3 â Final Panel dataset with pill counts after Part 3.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987179.v1
title: MOESM12 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 12. Lists of candidate genes in ver meta-QTLs intervals with the corresponding genomic positions derived by anchoring to the genome and CRIBIv1 annotation. GO annotation was included only for genes with GOs related to expression regulation, signalling or development (GO:0000166, GO:0003676, GO:0003677, GO:0003682, GO:0003700, GO:0005102, GO:0005634, GO:0007154, GO:0007165, GO:0007275, GO:0009653, GO:0009719, GO:0009791, GO:0009908, GO:0016301, GO:0030154, GO:0038023, GO:0040007) representing most relevant positional candidates for veraison regulation according to functional annotation.
DOI: 10.6084/m9.figshare.9987185.v1
title: MOESM7 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 7. 4 â Final Panel dataset after Part 4.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987173
title: MOESM11 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 11. Meta-QTLs calculated from veraison QTLs overlapping with other phenology QTLs on LG1 and LG2 providing meta-QTLs in high agreement to meta-QTLs calculated only from veraison QTLs.
DOI: 10.6084/m9.figshare.9987161
title: MOESM4 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 4. 1 â Full Panel after Part 1.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987170
title: MOESM5 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 5. 2 â Wide dataset after Part 2.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987164
title: MOESM10 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 10. List of QTLs showing at least partial overlapping with similar QTLs from independent studies. Whole and short QTL names, as well asÂ the genetic position information and physical position information obtained through marker anchoring of the map to the genome are given. Details about QTL short names abbreviations are in Additional file 2.
DOI: 10.6084/m9.figshare.9987173.v1
title: MOESM11 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 11. Meta-QTLs calculated from veraison QTLs overlapping with other phenology QTLs on LG1 and LG2 providing meta-QTLs in high agreement to meta-QTLs calculated only from veraison QTLs.
DOI: 10.6084/m9.figshare.9987161.v1
title: MOESM4 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 4. 1 â Full Panel after Part 1.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987170.v1
title: MOESM5 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 5. 2 â Wide dataset after Part 2.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987155
title: MOESM3 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 3. 0 â Basic dataset.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987164.v1
title: MOESM10 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 10. List of QTLs showing at least partial overlapping with similar QTLs from independent studies. Whole and short QTL names, as well asÂ the genetic position information and physical position information obtained through marker anchoring of the map to the genome are given. Details about QTL short names abbreviations are in Additional file 2.
DOI: 10.6084/m9.figshare.9987146
title: MOESM9 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 9: Table S9. Target genes of cultivated grape miRNAs.
DOI: 10.6084/m9.figshare.9987149
title: MOESM1 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 1. PMTCT-ACT.do. Information on file format. STATA do file (version 15).
DOI: 10.6084/m9.figshare.9987149.v1
title: MOESM1 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 1. PMTCT-ACT.do. Information on file format. STATA do file (version 15).
DOI: 10.6084/m9.figshare.9987155.v1
title: MOESM3 of A tool for estimating antiretroviral medication coverage for HIV-infected women during pregnancy (PMTCT-ACT)

description: Additional file 3. 0 â Basic dataset.dta. Information on file format. STATA dataset (version 14 and 15).
DOI: 10.6084/m9.figshare.9987143
title: MOESM3 of RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea)

description: Additional file 3: Table S1. Candidate genes for ecological divergence of Heliopora species.
DOI: 10.6084/m9.figshare.9987146.v1
title: MOESM9 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 9: Table S9. Target genes of cultivated grape miRNAs.
DOI: 10.6084/m9.figshare.9987134
title: MOESM7 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 7: Table S7. Mature sequences, star sequences and precursor sequences of cultivated grape novel miRNAs.
DOI: 10.6084/m9.figshare.9987140
title: MOESM8 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 8: Table S8. Mature sequences, star sequences and precursor sequences of Chinese wild grape novel miRNAs.
DOI: 10.6084/m9.figshare.9987143.v1
title: MOESM3 of RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea)

description: Additional file 3: Table S1. Candidate genes for ecological divergence of Heliopora species.
DOI: 10.6084/m9.figshare.9987140.v1
title: MOESM8 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 8: Table S8. Mature sequences, star sequences and precursor sequences of Chinese wild grape novel miRNAs.
DOI: 10.6084/m9.figshare.9987134.v1
title: MOESM7 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 7: Table S7. Mature sequences, star sequences and precursor sequences of cultivated grape novel miRNAs.
DOI: 10.6084/m9.figshare.9987122
title: MOESM5 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 5: Table S5. Differential expressed miRNAs in Chinese wild grape.
DOI: 10.6084/m9.figshare.9987125
title: MOESM6 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 6: Table S6. Expression changes of 40 differential expressed tendencyâ s miRNA orthologous in cultivated grape and Chinese wild grape.
DOI: 10.6084/m9.figshare.9987125.v1
title: MOESM6 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 6: Table S6. Expression changes of 40 differential expressed tendencyâ s miRNA orthologous in cultivated grape and Chinese wild grape.
DOI: 10.6084/m9.figshare.9987113
title: MOESM4 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 4: Table S4. Differential expressed miRNAs in cultivated grape.
DOI: 10.6084/m9.figshare.9987122.v1
title: MOESM5 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 5: Table S5. Differential expressed miRNAs in Chinese wild grape.
DOI: 10.6084/m9.figshare.9987113.v1
title: MOESM4 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 4: Table S4. Differential expressed miRNAs in cultivated grape.
DOI: 10.6084/m9.figshare.9987101
title: MOESM2 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 2: Table S2. Chinese wild grape miRNA sequences.
DOI: 10.6084/m9.figshare.9987089
title: MOESM21 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 21: Table S21. Primers of randomly selected miRNAs for reverse transcription and qRT-PCR.
DOI: 10.6084/m9.figshare.9987101.v1
title: MOESM2 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 2: Table S2. Chinese wild grape miRNA sequences.
DOI: 10.6084/m9.figshare.9987086
title: MOESM8 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 8: Table S8. KEGG enrichment of the differentially expressed genes in tea leaves of MSX vs. CK groups.
DOI: 10.6084/m9.figshare.9987080
title: MOESM7 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 7:Table S7. KEGG enrichment of the differentially expressed genes in tea roots of MSX vs. CK groups.
DOI: 10.6084/m9.figshare.9987083
title: MOESM20 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 20: Table S20. KEGG pathways of targets of DEMs in Chinese wild grape.
DOI: 10.6084/m9.figshare.9987077
title: MOESM1 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 1: Table S1. Cultivated grape miRNA sequences.
DOI: 10.6084/m9.figshare.9987080.v1
title: MOESM7 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 7:Table S7. KEGG enrichment of the differentially expressed genes in tea roots of MSX vs. CK groups.
DOI: 10.6084/m9.figshare.9987083.v1
title: MOESM20 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 20: Table S20. KEGG pathways of targets of DEMs in Chinese wild grape.
DOI: 10.6084/m9.figshare.9987089.v1
title: MOESM21 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 21: Table S21. Primers of randomly selected miRNAs for reverse transcription and qRT-PCR.
DOI: 10.6084/m9.figshare.9987077.v1
title: MOESM1 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 1: Table S1. Cultivated grape miRNA sequences.
DOI: 10.6084/m9.figshare.9987086.v1
title: MOESM8 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 8: Table S8. KEGG enrichment of the differentially expressed genes in tea leaves of MSX vs. CK groups.
DOI: 10.6084/m9.figshare.9987068
title: MOESM5 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 5: Table S5. GO enrichment analysis of the differentially expressed genes in MSX treated tea roots vs. non treated tea roots.
DOI: 10.6084/m9.figshare.9987074
title: MOESM6 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 6:Table S6. GO enrichment analysis of the differentially expressed genes in MSX treated tea leaves vs. non treated tea leaves.
DOI: 10.6084/m9.figshare.9987071
title: MOESM19 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 19: Table S19. KEGG pathways of targets of DEMs in cultivated grape.
DOI: 10.6084/m9.figshare.9987062
title: MOESM4 of Short-term inhibition of glutamine synthetase leads to reprogramming of amino acid and lipid metabolism in roots and leaves of tea plant (Camellia sinensis L.)

description: Additional file 4: Table S4. The differentially expressed genes (DEGs) in leaves of methionine sulfoximine (MSX) treated and untreated (control) plants.
DOI: 10.6084/m9.figshare.9987071.v1
title: MOESM19 of Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine

description: Additional file 19: Table S19. KEGG pathways of targets of DEMs in cultivated grape.