cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4047513.v1
title: Supplementary Material for: The Prognostic Value of CT Angiography and CT Perfusion in Acute Ischemic Stroke

description: <br><strong><em>Background:</em></strong> CT angiography (CTA) and CT perfusion (CTP) are important diagnostic tools in acute ischemic stroke. We investigated the prognostic value of CTA and CTP for clinical outcome and determined whether they have additional prognostic value over patient characteristics and non-contrast CT (NCCT). <b><i>Methods:</i></b> We included 1,374 patients with suspected acute ischemic stroke in the prospective multicenter Dutch acute stroke study. Sixty percent of the cohort was used for deriving the predictors and the remaining 40% for validating them. We calculated the predictive values of CTA and CTP predictors for poor clinical outcome (modified Rankin Scale score 3-6). Associations between CTA and CTP predictors and poor clinical outcome were assessed with odds ratios (OR). Multivariable logistic regression models were developed based on patient characteristics and NCCT predictors, and subsequently CTA and CTP predictors were added. The increase in area under the curve (AUC) value was determined to assess the additional prognostic value of CTA and CTP. Model validation was performed by assessing discrimination and calibration. <b><i>Results:</i></b> Poor outcome occurred in 501 patients (36.5%). Each of the evaluated CTA measures strongly predicted outcome in univariable analyses: the positive predictive value (PPV) was 59% for Alberta Stroke Program Early CT Score (ASPECTS) ≤7 on CTA source images (OR 3.3; 95% CI 2.3-4.8), 63% for presence of a proximal intracranial occlusion (OR 5.1; 95% CI 3.7-7.1), 66% for poor leptomeningeal collaterals (OR 4.3; 95% CI 2.8-6.6), and 58% for a &gt;70% carotid or vertebrobasilar stenosis/occlusion (OR 3.2; 95% CI 2.2-4.6). The same applied to the CTP measures, as the PPVs were 65% for ASPECTS ≤7 on cerebral blood volume maps (OR 5.1; 95% CI 3.7-7.2) and 53% for ASPECTS ≤7 on mean transit time maps (OR 3.9; 95% CI 2.9-5.3). The prognostic model based on patient characteristics and NCCT measures was highly predictive for poor clinical outcome (AUC 0.84; 95% CI 0.81-0.86). Adding CTA and CTP predictors to this model did not improve the predictive value (AUC 0.85; 95% CI 0.83-0.88). In the validation cohort, the AUC values were 0.78 (95% CI 0.73-0.82) and 0.79 (95% CI 0.75-0.83), respectively. Calibration of the models was satisfactory. <b><i>Conclusions:</i></b> In patients with suspected acute ischemic stroke, admission CTA and CTP parameters are strong predictors of poor outcome and can be used to predict long-term clinical outcome. In multivariable prediction models, however, their additional prognostic value over patient characteristics and NCCT is limited in an unselected stroke population.
DOI: 10.3535/4qj-3hg-c0a
title: †Oepikina Salmon, 1942

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bzj-pdw-9w6
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ef9-zh6-1jm
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mw6-jqk-7qv
title: †Asaphus (Neoasaphus) platyurus (Angelin, 1854)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28082090.v1
title: Two new genera of killifish (Cyprinodontiformes) from the Middle Miocene of the Bugojno Basin, Bosnia and Herzegovina: insights into the lost diversity of Valenciidae

description: Present-day killifishes (Cyprinodontiformes, toothcarps), known for their diversity and ecological adaptability, are represented in Eurasia by two families that each have their own taxonomic diversity, namely the diverse Aphaniidae (eight genera, &gt; 40 species) and the less diverse Valenciidae (one genus, three species). The fossil record of both families is quite extensive in the area of Western and Central Europe, but is poor elsewhere. Here we present new fossil killifish material (consisting of 179 individuals, in many cases with otoliths <i>in situ</i>) from the Middle Miocene of south-eastern Europe (that is, site Gračanica in the Bugojno Basin, Bosnia and Herzegovina) using both comparative morphology (including meristics, osteology and otoliths) and phylogenetic analysis. For the latter, we used a substantially expanded morphological matrix of a previous work and conducted implied-weight maximum parsimony analyses both without constraints and with a molecular scaffold as a backbone for the extant taxa (with fossils left as floaters). Our results show that the Bugojno killifish assemblage consists exclusively of members of two new genera of the Valenciidae, †<i>Miovalencia</i> gen. nov. and †<i>Wilsonilebias</i> gen. nov., each of which is represented by two species (three new and one genus reassignment). We also found that not only the saccular otolith (sagitta), which is well known for its taxonomic information, but also the utricular otolith (lapillus) provide important taxonomic information for generic diagnosis. The discovery of the new species from the Bugojno Basin expands the known geographical distribution of the fossil Valenciidae to the Dinaride Lake System of south-eastern Europe. Furthermore, by surveying previous works, we uncovered that the fossil Valenciidae were taxonomically diverse and widely distributed geographically, which is in stark contrast with their diversity and biogeography today. Our results highlight the importance of detailed taxonomic and phylogenetic investigations of fossil killifishes in gaining insight into the evolutionary history of this remarkable group among today’s freshwater fish faunas. http://zoobank.org/urn:urn:lsid:zoobank.org:pub:8DBFDC35-4DC7-4368-AEA7-8C40D4208EC5
DOI: 10.3535/nk1-74f-vmm
title: †Asaphus (Neoasaphus) platyurus (Angelin, 1854)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yzh-cf9-em0
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ppb-d62-cdp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rlb-gv9-1m7
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tzp-y5q-bdr
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4qh-re3-n5h
title: †Oepikina Salmon, 1942

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d74-332-ha5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13236986.v2
title: Projeto_LixoMarinho_macrolitter.xlsx

description: This dataset contains 1 csv file (Projeto_LixoMarinho_macrolitter.xlsx), divided in 3 sheets. One sheet is the core file, which contains information about station label (S1, S2, S3 and S4), data of collection, GPS coordinates in decimal degrees, strata (dune, water and middle), sampling protocol, effort and sampled area. One sheet contains environmental data, as wind direction and intensity and beach width collected during the sampling. One sheet contains marine litter data as material, type, source, colour, degree of hardness, size and weight. A “parameters information” text file contains description and/or measured unit of columns content for the three csv files. The United Nations Environment Programme (UNEP) defines <strong>marine</strong> <strong>litter</strong> as 'any persistent, manufactured or processed solid material discarded, disposed of or abandoned in the <strong>marine</strong> and coastal environment'. Marine litter were collected in Cassino beach in Rio Grande municipality, Rio Grande do Sul, Brazil in four points (S1, S2, S3, S4). S4 started to be sampled in May 2016. Some months was not possible to sample S4 due meteorological conditions that difficulted access to this point. Sampling were done monthly from 2015 (December), 2016 (January – December, except September), 2018 (December) and 2019 (January-March). Items were removed from dune base and wrack line strata in a 200 m<sup>2</sup> transects triplicate. In middle strata area vary according beach width and only started to be sampled in January 2017. The items were divided in 8 material-categories (Fabric, Glass, Metal, Other, Paper, Plastic, Rubber and Wood), 8 sources-categories (Domestic, Domestic / Tourism, Fishery, International, Religious, Tourism, Undetermined and Vessel) and 119 types (specific items). Type, material and source list was based in UNEP/IOC Guidelines on Survey and Monitoring of Marine Litter guide, 2009 with the addition of region-specific items. All data were collected by Projeto Lixo Marinho by Federal University of Rio Grande (FURG). GPS positions were taken for each sampling site. All items were removed from the beach, cleaned and dried in laboratory, after taking measures all items were properly disposed of and recycled (where possible).<b></b>
DOI: 10.6084/m9.figshare.3553965.v1
title: Appendix B. Multivariate analyses and mixed-effects models.

description: Multivariate analyses and mixed-effects models.
DOI: 10.3535/115-1zy-3kb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t6s-asb-z57
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0tg-fw8-k69
title: †Orthoceras Bruguière, 1789

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q5j-dn4-ntl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f4f-99a-mva
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m6a-g9y-y2a
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mz9-7hd-33k
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yp7-48f-8fj
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ez0-12k-mck
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m7z-wxa-9e0
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12554561.v1
title: Metabolic data of tea accessions

description: Metabolite data of tea accessions.
DOI: 10.6084/m9.figshare.7642439.v1
title: DataS1 - review table

description: Review table for: Belowground responses to insect herbivory in forest ecosystems: a global meta-analysis
DOI: 10.3535/50g-v08-n9x
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7x9-2q7-mw7
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1st-khm-f7t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j7e-gda-g2c
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21405309.v1
title: Collecting Data and Constructing Metadate for the Birdwatching Pilot Experiment

description: My pilot field experiment is balcony birdwatching. Data are collected from Mississauga, Ontario, Canada. There are 11 variables. The variables are described clearly in table 2. Table 1 is my dataset about birdwatching. Table 2 is my metadata showing a brief description of each variable. There are 22 observations of birdwatching. The data are collected over ten days. Birdwatching is being able to go into nature and record different data about birds and the surrounding environment.
DOI: 10.3535/hpf-5hp-ad1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zns-28w-y85
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/leg-l01-4bf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7286237.v2
title: Gzipped genome-guided transcriptome assembly (fasta) for Sinella curviseta

description: Gzipped genome-guided transcriptome assembly (fasta)
DOI: 10.3535/63n-jsq-10z
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g0p-v3l-d1j
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28581113.v2
title: Supplemental Tables

description: Manuscript Title: To identify GM taxa that potentially possess causal effects on longevity and aging and dissect the mediation role of the cerebrospinal fluid proteins by using genetics.
DOI: 10.3535/bqv-q1h-9g2
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pnj-7p4-8b7
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q1p-nnv-fhz
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22226929.v1
title: CrudeOil_RailTerminals_2017_2018_EIA.cpg

description: Rail terminals that handle loading and unloading of crude oil. Created by EIA using publicly available data. Includes all rail terminals with activity between 2017 and 2018.
DOI: 10.6084/m9.figshare.6981839.v1
title: C-terminal psi blast tree

description: Files used to create phylogenetic tree to analyze the history of lineage specific ankyrin domain genes. Details on methodology given in forthcoming publication currently on biorxiv https://doi.org/10.1101/383968
DOI: 10.3535/bmj-xle-shs
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gns-255-4aa
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ftb-kf9-wyw
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.23644/uu.5497855.v1
title: Tour Berlijn - Macht en ruimte

description: Berlijn is meer dan een interessante verzameling gebouwen: het is vooral ook één groot geschiedenisboek, met verschillende historische lagen. Tijdens de wandeling kijken we vooral naar de invloed van twee dictaturen: vanaf 1933 tot 1945 het nazisme, en na de oorlog in het oosten van de stad de autoritaire, communistische DDR. Beide regimes wilden in de hoofdstad aan de bevolking laten zien dat nieuwe tijden waren aangebroken. Imposante gebouwen verrezen, standbeelden werden opgericht en straten verbreed voor militaire parades. Herinneringen aan voorafgaande tijden werden vaak op brute wijze verwijderd. Tijdens de wandeling zien we ook de transformatie van de stad sinds de omwenteling.<br>Waar mogelijk kijken met een geografische blik naar de stad: naar patronen, structuren en verbanden. Bij veel excursiepunten bieden oude afbeeldingen of kaarten een breder perspectief.<br>Ook beschikbaar via izi.travel: https://izi.travel/en/browse/77d360f7-61d7-4c1a-9559-40857efb51b9
DOI: 10.3535/bzy-np5-zm9
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kw8-zdy-c1x
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jlh-zna-rca
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x1k-9kd-r4r
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ddy-grg-t15
title: †Endoceras J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zza-dgl-34j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6j6-c3y-28n
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ply-k7e-rb6
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zax-lz5-a57
title: †Chaetetes Fischer, 1830

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1363637.v1
title: Dataset: Face gender influences the looking preference for smiling expressions in 3.5-month-old human infants

description: Data and code for: L. Bayet, P. C. Quinn, J. W. Tanaka, K. Lee, É. Gentaz, & O. Pascalis (2015) Face gender influences the looking preference for smiling expressions in 3.5-month-old human infants. Plos ONE 10(6):e0129812 doi: 10.1371/journal.pone.0129812 Abstract: Young infants are typically thought to prefer looking at smiling expressions. Although some accounts suggest that the preference is automatic and universal, we hypothesized that it is not rigid and may be influenced by other face dimensions, most notably the face’s gender. Infants are sensitive to the gender of faces; for example, 3-month-olds raised by female caregivers typically prefer female over male faces. We presented neutral versus smiling pairs of faces from the same female or male individuals to 3.5-month-old infants (n = 25), controlling for low-level cues. Infants looked longer to the smiling face when faces were female but longer to the neutral face when faces were male, i.e., there was an effect of face gender on the looking preference for smiling. The results indicate that a preference for smiling in 3.5-month-olds is limited to female faces, possibly reflective of differential experience with male and female faces.
DOI: 10.6084/m9.figshare.17010020.v2
title: Decoding family-level features for modern and fossil leaves from computer-vision heat maps (AJB 2022): Annotated heat maps and raw data

description: This data item supports its primary research article in <i>American Journal of Botany</i> (Spagnuolo et al., 2022) and contains the following contributions. Please see the primary article for all explanations.<br><br>1. Complete set of annotated heat maps organized as pdfs by plant family as seen in figs. 1, 3, 4, 6 of the primary article. Blue circles indicate the top-5 squares. Additional circle indicates the top-1 square. Horizontal lines indicate 25% and 75% of blade length. Text labels include genus, species, and the Wolfe (NCLC-W) catalog number for the cleared leaf specimen.<br> a. “Anacardiaceae Annotated Heat Maps.pdf”<br>b. “Annonaceae Annotated Heat Maps.pdf” <br>c. “Apocynaceae Annotated Heat Maps.pdf” <br>d. “Betulaceae Annotated Heat Maps.pdf”<br>e. “Celastraceae Annotated Heat Maps.pdf” <br>f. “Ericaceae Annotated Heat Maps.pdf” <br>g. “Fabaceae Annotated Heat Maps.pdf” <br>h. “Fagaceae Annotated Heat Maps.pdf” <br>i. “Malvaceae Annotated Heat Maps.pdf” <br>j. “Myrtaceae Annotated Heat Maps.pdf” <br>k. “Rosaceae Annotated Heat Maps.pdf”<br>l. “Rubiaceae Annotated Heat Maps.pdf” <br>m. “Salicaceae Annotated Heat Maps.pdf”<br>n. “Sapindaceae Annotated Heat Maps.pdf”<br><br>2. Raw data of top-5 and top-1 square scores for all specimens in the 14 families as a csv file (supporting primary article fig. 2 and item 5, below). <br> a. “Spagnuolo et al Raw Data.csv”<br><br>3. Within-family mean and median top-5 and top-1 scores for all families as csv files (supporting primary article figs. 4, 5). <br> a. “Top.5 Mean Scores.csv”<br> b. “Top.1 Mean Scores.csv”<br> c. “Top.5 Median Scores.csv”<br><br>4. Within-family means and medians separated by toothed vs. untoothed and lobed vs. unlobed leaves, in separate csv files.<br>Toothed and lobed fractions are only shown for families that had toothed or lobed samples in this dataset (see table 2 of primary article).<br> a. “Toothed and Lobed Comparisons, Means.csv”<br> b. “Toothed and Lobed Comparisons, Medians.csv”<br><br>5. Box plots of top-1 scores by family for each of 21 leaf locations as pdf file. See fig. 2 of the primary article for top-5 box plots and more information. <br> a. “Spagnuolo et al top.1 Box Plots.pdf”<br><br><br>Spagnuolo, EJ, P Wilf, T Serre. 2022. Decoding family-level features for modern and fossil leaves from computer-vision heat maps. American Journal of Botany. doi: 10.1002/ajb2.1842<br><br>
DOI: 10.3535/3rb-yc0-gcg
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bpg-4c0-xp4
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3rr-xw6-avx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f65-f81-p5e
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14806236.v1
title: A neuronal circuit that generates the temporal motor sequence for the defensive response in zebrafish larvae

description: Animals use a precisely timed motor sequence to escape predators. This requires the nervous system to coordinate several motor behaviors and execute them in a temporal and smooth manner. We here describe a neuronal circuit that faithfully generates a defensive motor sequence in zebrafish larva. The temporal defensive escape sequence consists of an initial escape and a subsequent fast forward swim and can be initiated by unilateral stimulation of a single M-cell. The smooth transition from escape phase to fast forward swim phase is achieved by activating a neuronal chain circuit, which permits a M-cell to drive descending neurons in bilateral nMLF via activation of an intermediate excitatory loop formed by interconnected hindbrain cranial relay neurons. The sequential activation of escape command center, M-cells and a fast swim command center, neurons in bilateral nMLF via a neuronal chain circuit ensures the smooth execution of escape and swim phases in a timely manner. We propose there exists a serial model that executes a temporal motor sequence involving three different brain regions that initiates the escape behavior and triggers a subsequent fast forward swim. This model has general implications regarding the neural control of complex motor sequences.
DOI: 10.3535/hr6-sg5-ztk
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vaf-ye0-bvb
title: Serpula Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gkk-wqa-6sh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.