cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6126287.v1
title: Additional file 4: of l-carnitine in critically ill patients—a case series study

description: Figure S4. Correlation of BMI and SOFA score with the change in f-Carnitine from day 0 to day 14. (a) Each plot depicts a relationship between the BMI on the x-axis, and the change of f-Carnitine from day 0 to day 14 (Δ f-Carnitine) on the y-axis. There was a significant negative correlation between the BMI and the Δf-Carnitine (r = − 0.47, p = 0.01), which suggests an association between lower BMI and larger decrease of f-Carnitine. (b) Each plot depicts a relationship between the SOFA score at the time of ICU admission on the x-axis, and the change of f-Carnitine from day 0 to day 14 (Δ f-Carnitine) on the y-axis. There was a significant correlation between the SOFA score on ICU admission and the Δf-Carnitine (r = 0.46, p = 0.01), which suggests an association between high SOFA score and larger decrease of f-Carnitine. (ZIP 188 kb)
DOI: 10.6084/m9.figshare.6126248
title: Additional file 2: of l-carnitine in critically ill patients—a case series study

description: Figure S2. Distribution of carnitine concentrations on ICU admission. (a) The distribution of t-Carnitine on ICU admission is shown in the histogram. The mean t-Carnitine was 94.9 ± 79.6 nmol/mL, and the median t-Carnitine was 64.2 (50.5–102.3) nmol/mL. (b) The distribution of f-Carnitine on ICU admission is shown in the histogram. The mean f-Carnitine was 68.6 ± 51.2 nmol/mL, and the median f-Carnitine was 50.5 (36.8–80.3) nmol/mL. (ZIP 160 kb)
DOI: 10.6084/m9.figshare.6126248.v1
title: Additional file 2: of l-carnitine in critically ill patients—a case series study

description: Figure S2. Distribution of carnitine concentrations on ICU admission. (a) The distribution of t-Carnitine on ICU admission is shown in the histogram. The mean t-Carnitine was 94.9 ± 79.6 nmol/mL, and the median t-Carnitine was 64.2 (50.5–102.3) nmol/mL. (b) The distribution of f-Carnitine on ICU admission is shown in the histogram. The mean f-Carnitine was 68.6 ± 51.2 nmol/mL, and the median f-Carnitine was 50.5 (36.8–80.3) nmol/mL. (ZIP 160 kb)
DOI: 10.6084/m9.figshare.6126158
title: Additional file 2: of Investigation into the role of the germline epigenome in the transmission of glucocorticoid-programmed effects across generations

description: Table of histone alignment metrics. (XLS 38 kb)
DOI: 10.6084/m9.figshare.6126158.v1
title: Additional file 2: of Investigation into the role of the germline epigenome in the transmission of glucocorticoid-programmed effects across generations

description: Table of histone alignment metrics. (XLS 38 kb)
DOI: 10.6084/m9.figshare.6126134
title: Additional file 1: of Fast acquisition of a polysaccharide fermenting gut microbiome by juvenile green turtles Chelonia mydas after settlement in coastal habitats

description: Phylogeny and incidence of gut eubacteria. (XLSX 1339 kb)
DOI: 10.6084/m9.figshare.6126134.v1
title: Additional file 1: of Fast acquisition of a polysaccharide fermenting gut microbiome by juvenile green turtles Chelonia mydas after settlement in coastal habitats

description: Phylogeny and incidence of gut eubacteria. (XLSX 1339 kb)
DOI: 10.6084/m9.figshare.6126122
title: Additional file 3: of Deciphering viral presences: two novel partial giant viruses detected in marine metagenome and in a mine drainage metagenome

description: Blastp result obtained using de novo predicted proteins for the marine metagenome NVVL00000000.1. Data sheet represent all blastp results obtained and extracted specific blast for each contig. We added the annotation of the Misidentifiedvirus in the column H of the datasheet named â Genermarks-111contigâ . (XLSX 14868 kb)
DOI: 10.6084/m9.figshare.6126122.v1
title: Additional file 3: of Deciphering viral presences: two novel partial giant viruses detected in marine metagenome and in a mine drainage metagenome

description: Blastp result obtained using de novo predicted proteins for the marine metagenome NVVL00000000.1. Data sheet represent all blastp results obtained and extracted specific blast for each contig. We added the annotation of the Misidentifiedvirus in the column H of the datasheet named â Genermarks-111contigâ . (XLSX 14868 kb)
DOI: 10.6084/m9.figshare.6126104
title: Additional file 2: of Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress

description: List of enriched peaks and their location in the Brachypodium genome. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.6126104.v1
title: Additional file 2: of Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress

description: List of enriched peaks and their location in the Brachypodium genome. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.6126098
title: Additional file 2: of Deciphering viral presences: two novel partial giant viruses detected in marine metagenome and in a mine drainage metagenome

description: MG-digger results. The NCBI databases available are up to October 2017. Data sheet contains all queries matching with each identified subjects. We added annotation in the column F. BLAST scores are indicate in columns from G to S. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6126071
title: Additional file 1: of Deciphering viral presences: two novel partial giant viruses detected in marine metagenome and in a mine drainage metagenome

description: Data sheet about HHblits results obtained for the predicted protein ORPV_1034. 65 hits are mentioned with their probabilities, alignments, e-value and target length. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6126071.v1
title: Additional file 1: of Deciphering viral presences: two novel partial giant viruses detected in marine metagenome and in a mine drainage metagenome

description: Data sheet about HHblits results obtained for the predicted protein ORPV_1034. 65 hits are mentioned with their probabilities, alignments, e-value and target length. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.6126047
title: Additional file 1: of Matrix metalloproteinase-9 (MMP9) is involved in the TNF-α-induced fusion of human M13SV1-Cre breast epithelial cells and human MDA-MB-435-pFDR1 cancer cells

description: Differentially-regulated genes in TNF-α-treated M13SV1-Cre and MDA-MB-435-pFDR1 cells under normoxic and hypoxic conditions. Genes that were up-regulated and down-regulated by at least 2-fold in TNF-α-treated cells compared with untreated cells (not detected flags and compromised spots were not removed). Genes shown in Fig. 1 are marked in yellow. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.6126047.v1
title: Additional file 1: of Matrix metalloproteinase-9 (MMP9) is involved in the TNF-α-induced fusion of human M13SV1-Cre breast epithelial cells and human MDA-MB-435-pFDR1 cancer cells

description: Differentially-regulated genes in TNF-α-treated M13SV1-Cre and MDA-MB-435-pFDR1 cells under normoxic and hypoxic conditions. Genes that were up-regulated and down-regulated by at least 2-fold in TNF-α-treated cells compared with untreated cells (not detected flags and compromised spots were not removed). Genes shown in Fig. 1 are marked in yellow. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.6126032
title: Additional file 1: of Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle

description: Sequencing miRNA analysis. Normalised miRNA expression levels in bovine blood plasma and cell samples, and the results of differential expression analysis between the two sample types. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.6126032.v1
title: Additional file 1: of Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle

description: Sequencing miRNA analysis. Normalised miRNA expression levels in bovine blood plasma and cell samples, and the results of differential expression analysis between the two sample types. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.6126023
title: Additional file 4: of Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

description: Genbank proteins identified as PM2 group MCP. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.6126023.v1
title: Additional file 4: of Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

description: Genbank proteins identified as PM2 group MCP. (ZIP 5 kb)
DOI: 10.6084/m9.figshare.6126002
title: MOESM4 of Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians

description: Additional file 4: Table S2. Primer sequences used in this study.
DOI: 10.6084/m9.figshare.6126002.v1
title: MOESM4 of Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians

description: Additional file 4: Table S2. Primer sequences used in this study.
DOI: 10.6084/m9.figshare.6125975
title: Additional file 9: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S7. List of target genes of the differentially expressed miRNA as predicted by TargetScan (cumulative weighted context++ score
DOI: 10.6084/m9.figshare.6125975.v1
title: Additional file 9: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S7. List of target genes of the differentially expressed miRNA as predicted by TargetScan (cumulative weighted context++ score
DOI: 10.6084/m9.figshare.6125969
title: Additional file 1: of Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

description: HHpred search results of conserved proteins of Odin and STIV groups. (ZIP 648 kb)
DOI: 10.6084/m9.figshare.6125969.v1
title: Additional file 1: of Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

description: HHpred search results of conserved proteins of Odin and STIV groups. (ZIP 648 kb)
DOI: 10.6084/m9.figshare.6125951
title: Additional file 8: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S6. Biological networks associated with top diseases and functions that were overrepresented among microRNAs differentially expressed between bovine monocyte-derived macrophages infected with Streptococcus agalactiae strains ST103 or ST12, and the respective uninfected controls. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6125951.v1
title: Additional file 8: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S6. Biological networks associated with top diseases and functions that were overrepresented among microRNAs differentially expressed between bovine monocyte-derived macrophages infected with Streptococcus agalactiae strains ST103 or ST12, and the respective uninfected controls. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6125945
title: Additional file 1: of Analysis of neuroanatomical differences in mice with genetically modified serotonin transporters assessed by structural magnetic resonance imaging

description: Regional volume differences found for the whole group ANOVA analysis shown in Fig. 4. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.6125945.v1
title: Additional file 1: of Analysis of neuroanatomical differences in mice with genetically modified serotonin transporters assessed by structural magnetic resonance imaging

description: Regional volume differences found for the whole group ANOVA analysis shown in Fig. 4. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.6125936
title: Additional file 7: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S5. Detailed information on microRNAs significantly differentially expressed between bovine monocyte-derived macrophages infected with Streptococcus agalactiae strains ST103 or ST12, and the respective uninfected controls. Padj - Benjamini and Hochberg corrected P-value. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6125936.v1
title: Additional file 7: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S5. Detailed information on microRNAs significantly differentially expressed between bovine monocyte-derived macrophages infected with Streptococcus agalactiae strains ST103 or ST12, and the respective uninfected controls. Padj - Benjamini and Hochberg corrected P-value. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6125930
title: MOESM1 of Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians

description: Additional file 1: Table S1. Protein sequences used in this study with their length, accession number and the corresponding species.
DOI: 10.6084/m9.figshare.6125930.v1
title: MOESM1 of Molecular, phylogenetic and developmental analyses of Sall proteins in bilaterians

description: Additional file 1: Table S1. Protein sequences used in this study with their length, accession number and the corresponding species.
DOI: 10.6084/m9.figshare.6125897
title: Additional File 5:

description: Table S4. The lists of microRNAs identified in blood monocyte-derived macrophages infected in vitro with live Streptococcus agalactiae strains ST103 and ST12, LPS, and uninfected (controls), respectively. Mean reads number normalized across all samples were calculated using DESeq2. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.6125897.v1
title: Additional File 5:

description: Table S4. The lists of microRNAs identified in blood monocyte-derived macrophages infected in vitro with live Streptococcus agalactiae strains ST103 and ST12, LPS, and uninfected (controls), respectively. Mean reads number normalized across all samples were calculated using DESeq2. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.6125888
title: Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived macrophages. The number of initial reads per sample, the percentage of trimmed reads, the percentage of uniquely mapped reads, read distribution (% reads), length filtering (% of discarded reads) and an average read length (nt) for each sample are presented. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6125888.v1
title: Additional file 4: of MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae

description: Table S3. The results of next generation sequencing of 20 libraries from bovine monocyte-derived macrophages. The number of initial reads per sample, the percentage of trimmed reads, the percentage of uniquely mapped reads, read distribution (% reads), length filtering (% of discarded reads) and an average read length (nt) for each sample are presented. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.6125819
title: Additional file 1: of Genetic loci for resistance to podocyte injury caused by the tensin2 gene deficiency in mice

description: Table S1. Genomic positions of polymorphic genetic markers between B6 and FVB strains. Table S2. Sequences of the PCR primers used to identify polymorphic indel mutations between B6 and FVB strains. Table S3. Genes located on syntenic human 12q23.2 â q23.3, 19p13.3 and 21q22.3. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.6125819.v1
title: Additional file 1: of Genetic loci for resistance to podocyte injury caused by the tensin2 gene deficiency in mice

description: Table S1. Genomic positions of polymorphic genetic markers between B6 and FVB strains. Table S2. Sequences of the PCR primers used to identify polymorphic indel mutations between B6 and FVB strains. Table S3. Genes located on syntenic human 12q23.2 â q23.3, 19p13.3 and 21q22.3. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.6125465
title: Psychosocial support center and territory: human space, communication, and interdisciplinarity

description: Abstract The psychiatric reform is addressed from a theoretical and conceptual perspective through the concept of territory, which is analyzed as human space, as communication, and as related to the way interdisciplinary knowledge is produced. These concepts (territory and interdisciplinarity) were identified in a semistructured interview with the psychiatrist and professor Pedro Gabriel Delgado, who classified them as operative. We conclude that this understanding enables theory and practice to be configured as praxis, producing meanings and transformations and enabling close ties between the functioning of community-based services and the transformation of the relationship between insanity and society.
DOI: 10.6084/m9.figshare.6125465.v1
title: Psychosocial support center and territory: human space, communication, and interdisciplinarity

description: Abstract The psychiatric reform is addressed from a theoretical and conceptual perspective through the concept of territory, which is analyzed as human space, as communication, and as related to the way interdisciplinary knowledge is produced. These concepts (territory and interdisciplinarity) were identified in a semistructured interview with the psychiatrist and professor Pedro Gabriel Delgado, who classified them as operative. We conclude that this understanding enables theory and practice to be configured as praxis, producing meanings and transformations and enabling close ties between the functioning of community-based services and the transformation of the relationship between insanity and society.
DOI: 10.6084/m9.figshare.6125456
title: Neonatal atrial flutter after insertion of an intracardiac umbilical venous catheter

description: Abstract Objective: To describe a case of neonatal atrial flutter after the insertion of an intracardiac umbilical venous catheter, reporting the clinical presentation and reviewing the literature on this subject. Case description: A late-preterm newborn, born at 35 weeks of gestational age to a diabetic mother and large for gestational age, with respiratory distress and rule-out sepsis, required an umbilical venous access. After the insertion of the umbilical venous catheter, the patient presented with tachycardia. Chest radiography showed that the catheter was placed in the position that corresponds to the left atrium, and traction was applied. The patient persisted with tachycardia, and an electrocardiogram showed atrial flutter. As the patient was hemodynamically unstable, electric cardioversion was successfully applied. Comments: The association between atrial arrhythmias and misplaced umbilical catheters has been described in the literature, but in this case, it is noteworthy that the patient was an infant born to a diabetic mother, which consists in another risk factor for heart arrhythmias. Isolated atrial flutter is a rare tachyarrhythmia in the neonatal period and its identification is essential to establish early treatment and prevent systemic complications and even death.
DOI: 10.6084/m9.figshare.6125456.v1
title: Neonatal atrial flutter after insertion of an intracardiac umbilical venous catheter

description: Abstract Objective: To describe a case of neonatal atrial flutter after the insertion of an intracardiac umbilical venous catheter, reporting the clinical presentation and reviewing the literature on this subject. Case description: A late-preterm newborn, born at 35 weeks of gestational age to a diabetic mother and large for gestational age, with respiratory distress and rule-out sepsis, required an umbilical venous access. After the insertion of the umbilical venous catheter, the patient presented with tachycardia. Chest radiography showed that the catheter was placed in the position that corresponds to the left atrium, and traction was applied. The patient persisted with tachycardia, and an electrocardiogram showed atrial flutter. As the patient was hemodynamically unstable, electric cardioversion was successfully applied. Comments: The association between atrial arrhythmias and misplaced umbilical catheters has been described in the literature, but in this case, it is noteworthy that the patient was an infant born to a diabetic mother, which consists in another risk factor for heart arrhythmias. Isolated atrial flutter is a rare tachyarrhythmia in the neonatal period and its identification is essential to establish early treatment and prevent systemic complications and even death.
DOI: 10.6084/m9.figshare.6125453
title: Translation and cross-cultural adaptation into Brazilian Portuguese of the Mood and Feelings Questionnaire (MFQ) – Long Version

description: Abstract Introduction Major depressive disorder (MDD) is prevalent among young people, with a high incidence during adolescence. It is, therefore, important to have reliable instruments to capture the construct of depression in this population. The objective of the present work is to describe the process of translation and cultural adaptation of the Mood and Feelings Questionnaire (MFQ) – Long Version, into Brazilian Portuguese. Method We followed the International Society for Pharmacoeconomics and Outcomes Research (ISPOR) guidelines for translation and cultural adaptation, including the steps of preparation, forward translation, reconciliation, back-translation, back-translation review, harmonization, cognitive debriefing, review of cognitive debriefing results and finalization, proofreading and final report. Cognitive debriefing was conducted in a sample of adolescent patients and their respective caregivers at mental health clinics affiliated with the Brazilian public health system. Results Results suggest that the items were well understood and that the MFQ seems to be an appropriate instrument for use with Brazilian adolescents and caregivers. Conclusions The Brazilian Portuguese MFQ – Long Version constitutes an adequate tool for the assessment of depression among adolescents. Future studies are required to evaluate psychometric properties of the instrument.
DOI: 10.6084/m9.figshare.6125453.v1
title: Translation and cross-cultural adaptation into Brazilian Portuguese of the Mood and Feelings Questionnaire (MFQ) – Long Version

description: Abstract Introduction Major depressive disorder (MDD) is prevalent among young people, with a high incidence during adolescence. It is, therefore, important to have reliable instruments to capture the construct of depression in this population. The objective of the present work is to describe the process of translation and cultural adaptation of the Mood and Feelings Questionnaire (MFQ) – Long Version, into Brazilian Portuguese. Method We followed the International Society for Pharmacoeconomics and Outcomes Research (ISPOR) guidelines for translation and cultural adaptation, including the steps of preparation, forward translation, reconciliation, back-translation, back-translation review, harmonization, cognitive debriefing, review of cognitive debriefing results and finalization, proofreading and final report. Cognitive debriefing was conducted in a sample of adolescent patients and their respective caregivers at mental health clinics affiliated with the Brazilian public health system. Results Results suggest that the items were well understood and that the MFQ seems to be an appropriate instrument for use with Brazilian adolescents and caregivers. Conclusions The Brazilian Portuguese MFQ – Long Version constitutes an adequate tool for the assessment of depression among adolescents. Future studies are required to evaluate psychometric properties of the instrument.