cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14641949
title: Segmented Gel Electrophoresis Images used for Training GelGenie Models

description: This repository contains gel images and corresponding hand-labelled segmentation maps (575 total) from various sources.  The images have various sizes, shapes, gel contents and imaging conditions.  In more detail:



The matthew_gels (301 total), matthew_gels_2 (85 total) and nathan_gels (37 total) folders contain images originating from previous experiments in the Dunn Lab. 

The quantitation_ladder_gels (35 total) were generated specifically for the GelGenie project and contain gel ladders in each well.  These were used to generate the data for Figure 1 in the main paper.

The stella_gels_for_finetuning (26 total) folder contains gel images provided to us from Siyuan Stella Wang (Wyss Institute/Dana-Farber Cancer Institute) which we used to finetune our U-Net model and produce the results in Figure 4C of the main paper.

The external_gels (25 total) images were gifted to us from 5 different researchers: Yichen Zhao (images generated at the University of Waterloo), Huangchen Cui (images generated at Tsinghua University), Thomas Mayer (images generated at the Technical University of Munich), Joana Reis (images generated at the Dana-Farber Cancer Institute) and Ricarda Törner (images generated at the Dana-Farber Cancer Institute).  These were used as an external unseen test set for our fine-tuned model.

The lsdb_gels (66 total) folder contains segmentation maps of images downloaded from the RGB Caps dataset, which is available from https://dbarchive.biosciencedbc.jp/en/rgp-caps/desc.html.  The original images have been shared with a Creative Commons Attribution-Share Alike 2.1 Japan license.  Permission was obtained from the data depositors for the training of our models on these images, as well as for the sharing of derived segmentation masks using the CC-BY license.  To use this portion of the dataset, you will need to download the original images from the website, and place them alongside our segmentation masks, mirroring the same setup used for all the other datasets in this repository.


The folders are organised as follows:



The images, val_images and test_images contain the original images, split into training/validation/testing partitions respectively (except for the lsdb_gels dataset).

The masks, val_masks and test_masks contain the corresponding segmentation maps for each image in the main folders (they have identical naming i.e. an image named test_image.tif will have a segmentation map labelled test_image.tif).

The external_gels folder does not have validation or test partitions.


The segmentation maps are 8-bit images, for which a white pixel (0) corresponds to a background pixel and a brown pixel (1) corresponds to a foreground pixel.

This is the main dataset used to train the GelGenie models, for which the corresponding source code and GUI can be downloaded at https://github.com/mattaq31/GelGenie.
DOI: 10.15468/dl.byvxpu
title: Occurrence Download

description: A dataset containing 195440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Dactylis glomerata L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 195440 records from 504 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018589-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/jsxgxgnnxb.1
title: Waste Heat Recovery

description: This MATLAB code package implements the core methodology described in the paper titled "Parameter analysis of waste heat recovery system of latent heat utilization compound organic Rankine cycle",The code demonstrates the complete workflow from raw data preprocessing to final result generation,the code enables full reproducibility of Figures 3-14.
DOI: 10.17632/tx6pt4jfsn.1
title: Laser vs. Cryotherapy

description: Data Availability for Production

The data that support the findings of this study are available from [data source, e.g., "the corresponding author upon reasonable request" or "[repository name] at [DOI or URL]"] but restrictions apply to the availability of these data, which were used under license for the current study and so are not publicly available. Data are, however, available from the authors upon reasonable request and with permission of [relevant authority].

For further inquiries regarding data access, please contact [corresponding author’s name and email] or visit [repository link, if applicable].

Research Hypothesis and Interpretation of Data

Research Hypothesis:

This study hypothesizes that diode laser treatment is more effective than cryotherapy for the removal of plantar warts in terms of requiring fewer sessions while maintaining similar safety and pain levels.

Data Description:

The data used in this study originate from a single-blind, randomized controlled trial involving 44 participants diagnosed with plantar warts. Participants were randomly assigned to either the diode laser treatment group (n=22) or the cryotherapy group (n=22). Clinical evaluations were conducted at weekly intervals, recording variables such as number of sessions required for complete wart removal, pain levels assessed using the Visual Analog Scale (VAS), and any adverse events.

Notable Findings:

The diode laser group required significantly fewer treatment sessions (mean: 3.09 ± 0.92) compared to the cryotherapy group (mean: 3.91 ± 0.92; p=0.02).

Both treatments exhibited a similar safety profile, with only one reported case of increased pain in the laser group.

Pain levels decreased progressively over time for both groups, with no statistically significant differences between them.

Data Interpretation:

The results indicate that diode laser treatment provides a more efficient approach to plantar wart removal compared to cryotherapy, potentially reducing treatment duration and patient burden. The statistical analyses, including repeated-measures ANOVA and Mann-Whitney U tests, confirm that while both methods are effective, laser therapy achieves faster resolution. Clinicians may consider diode laser as a viable alternative to cryotherapy, particularly in cases where treatment efficiency is a priority.
DOI: 10.17632/pc5c7xt95s.1
title: kasilian research data - Akbari's PhD Thesis

description: The Research Data include two GIS Maps of Geology and Land Use. The grain size distribution analysis of the target sediment samples is attached in an Excel file. All the soil and sediment "Geochemical Data" has been also included.
DOI: 10.3886/icpsr27262.v1
title: Census of State and Local Law Enforcement Training Academies, 2006
title: Version 1

description: As of year-end 2006 a total of 648 state and local law
enforcement academies were providing basic training to
entry-level recruits in the United States. State agencies
approved 98 percent of these academies. This data collection describes
the academies in terms of their personnel, expenditures,
facilities, curricula, and trainees using data from the 2006
Census of State and Local Law Enforcement Training Academies (CLETA)
sponsored by the Bureau of Justice Statistics (BJS).
The 2006 CLETA, like the initial 2002 study, collected data
from all state and local academies that provided basic law
enforcement training. Academies that provided only
in-service training, corrections and detention training, or
other special types of training were excluded. Federal training
academies were also excluded.
description: A master list of law enforcement training academies operating
in the United States was compiled from a variety of
sources, including professional associations, state law
enforcement training organizations, and existing BJS law
enforcement data collections. An initial screening verified
telephone number, mailing address, and other academy
contact information.
The survey instrument was subsequently mailed to 734
academies. After the initial mailing, 13 additional academies
were added, resulting in a total of 747 academies
receiving the survey. During the course of survey administration,
99 academies were determined to be out of scope
because they did not conduct basic law enforcement training
during the study reference period.
Of the 648 academies finally determined to be eligible to
receive the survey, all but one responded to all (or nearly
all) of the questions. A majority (54.3 percent) of the responses
were received by mail. About a third (34.2 percent) were submitted
electronically through the survey website, and 11.4 percent
were transmitted by fax.
description: Data were from all state and local law enforcement academies that provided basic law enforcement training. Academies that provided only in-service training, corrections and detention training, or other special types of training were excluded. Federal training academies were also excluded.
description: Datasets: 
DS1: Census of State and Local Law Enforcement Training Academies, 2006
description: All state and local academies that provided basic law enforcement training.
description: mail questionnaire; web-based survey
DOI: 10.15468/dl.yd3eub
title: Occurrence Download

description: A dataset containing 47850 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Dactylorhiza maculata (L.) Soó",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 47850 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018594-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9y3e23
title: Occurrence Download

description: A dataset containing 474872 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Aves)",
 "StateProvince ~Casanare"
 ]
 }
 ]
}

 The dataset includes 474872 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018578-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nneg34
title: Occurrence Download

description: A dataset containing 8467 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Mammal assemblages recorded by camera traps inside and outside the evacuation zone of the Fukushima Daiichi Nuclear Power Plant accident",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rodentia"
 ]
}

 The dataset includes 8467 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018595-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uk58s5
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Danthonia californica Bol.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 524 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018596-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28363397
title: Study files

description: Docking results and analysis, MD input files and MD simulation analyses
DOI: 10.6084/m9.figshare.28363397.v1
title: Study files

description: Docking results and analysis, MD input files and MD simulation analyses
DOI: 10.15468/dl.pbmfcq
title: Occurrence Download

description: A dataset containing 2014 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tejidos de Plantas, Anfibios y Aves, en estudios bióticos de los Complejos de Páramos Chiles - Cumbal, La Cocha-Patascoy y Doña Juana - Chimayoy"
 ]
}

 The dataset includes 2014 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018598-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bug9p7
title: Occurrence Download

description: A dataset containing 6379 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (meta)",
 "TaxonKey is one of (Squamata)"
 ]
 }
 ]
}

 The dataset includes 6379 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018599-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmprpd
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Belize",
 "DatasetKey is one of (NMNH Extant Specimen Records (USNM, US), Tropicos MO Specimen Data, Tropicos Specimens Non-MO, Natural History Museum (London) Collection Specimens, Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares), The New York Botanical Garden Herbarium (NY), iNaturalist Research-grade Observations, Louisiana State University, Shirley C. Tucker Herbarium - Vascular Plants, Field Museum of Natural History (Botany) Seed Plant Collection, Edinburgh (E) Herbarium Specimens)",
 "OccurrenceStatus is Present",
 "TaxonKey is Sinclairia deamii (B.L.Rob. & Bartlett) Rydb."
 ]
}

 The dataset includes 33 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018600-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14329228
title: Predicting tumour evolution and drug resistance from heterogenous longitudinal cancer data

description: We introduce biPOD, a model-based bayesian framework that leverages longitudinal phenotypic (e.g., tumour volume, cell counts) or genotypic (e.g., mutation frequency) data to infer critical parameters of tumour progression within a single patient.

Here we release the data and code to reproduce the analysis on synthetic and real datasets presented in the preprint, while the R package can be consulted at https://github.com/caravagnalab/biPOD/
DOI: 10.5281/zenodo.14329227
title: Predicting tumour evolution and drug resistance from heterogenous longitudinal cancer data

description: We introduce biPOD, a model-based bayesian framework that leverages longitudinal phenotypic (e.g., tumour volume, cell counts) or genotypic (e.g., mutation frequency) data to infer critical parameters of tumour progression within a single patient.

Here we release the data and code to reproduce the analysis on synthetic and real datasets presented in the preprint, while the R package can be consulted at https://github.com/caravagnalab/biPOD/
DOI: 10.5517/ccdc.csd.cc2lr6wg
title: CCDC 2405596: Experimental Crystal Structure Determination

description: Related Article: Satish Chandra Philkhana, Joshua A. Malone, Estefania Armendariz-Gonzalez, Adi Saputra, Jacob R. Stepherson, Frank R. Fronczek, Rendy Kartika|2025|Tetrahedron|172|134415|doi:10.1016/j.tet.2024.134415
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvlvw
title: CCDC 2379059: Experimental Crystal Structure Determination

description: Related Article: Arne Merschel, Shkelqim Heda, Yury V. Vishnevskiy, Beate Neumann, Hans-Georg Stammler, Rajendra S. Ghadwal|2025|Chemical Science|16|2222|doi:10.1039/D4SC06782G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.14714909
title: GeoStats Data

description: This repository contains the geographical data used in the GeoStats Python package.

The data is to be used ONLY with the package. MAKE sure to cite all sources listed in the README file and follow their licenses.
DOI: 10.5281/zenodo.14714910
title: GeoStats Data

description: This repository contains the geographical data used in the GeoStats Python package.

The data is to be used ONLY with the package. MAKE sure to cite all sources listed in the README file and follow their licenses.
DOI: 10.15468/dl.j5uqza
title: Occurrence Download

description: A dataset containing 144407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Deschampsia cespitosa (L.) P.Beauv.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 144407 records from 374 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018597-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9ju65
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material citation, Specimen)",
 "Geometry POLYGON((-86.60649 -18.55873,-66.74325 -18.55873,-68.95569 -8.34083,-72.6325 -6.77881,-69.90115 -5.00243,-69.06074 -0.07137,-68.32538 0.66398,-66.64455 2.34417,-66.53738 6.63705,-72.31522 9.13424,-71.18083 12.52257,-74.21691 12.40442,-79.86498 8.8068,-78.50526 3.6096,-81.2247 -0.36257,-86.60649 -18.55873))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sadala Simon, 1880"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018601-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cr4b3j
title: Occurrence Download

description: A dataset containing 306866468 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, Europe)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1970-2024"
 ]
}

 The dataset includes 306866468 records from 9862 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018593-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dg3cc
title: Occurrence Download

description: A dataset containing 405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Lasiurus xanthinus (Thomas, 1897)"
 ]
}

 The dataset includes 405 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073619-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jd1hfc
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria leitana C.M.Taylor"
 ]
}

 The dataset includes 68 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033530-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfvsku
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xenophora longleyi Bartsch, 1931"
 ]
}

 The dataset includes 186 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051168-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq94rg
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "DecimalLatitude is greater than 37.0969438940468",
 "DecimalLatitude is less than 37.6845273470129",
 "DecimalLongitude is greater than -79.1626056047685",
 "DecimalLongitude is less than -78.42366793641"
 ]
}

 The dataset includes 268 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006492-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8y28u
title: Occurrence Download

description: A dataset containing 44172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Podocarpus L'Hér. ex Pers."
 ]
}

 The dataset includes 44172 records from 394 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006228-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.