cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4737849
title: DeepCrime and DeepMutation++ mutations for Speaker Recognition system

description: This is the dataset of mutations generated for Speaker Recognition subject system by DeepCrime and DeepMutation++ mutation testing tools as part of the "DeepCrime: Mutation Testing of Deep Learning Systems based on Real Faults" paper published at ACM SIGSOFT International Symposium on Software Testing and Analysis (ISSTA) 2021. The first part of this dataset is stored under the DOI 10.5281/zenodo.4737848.
DOI: 10.5281/zenodo.4737808
title: DeepCrime mutations for Udacity self-driving car system

description: This is the dataset of mutations generated for Udacity Dave-2 model by DeepCrime mutation testing tool as part of the "DeepCrime: Mutation Testing of Deep Learning Systems based on Real Faults" paper published at ACM SIGSOFT International Symposium on Software Testing and Analysis (ISSTA) 2021. The second part of this dataset is stored under DOI 10.5281/zenodo.4737810.
DOI: 10.5281/zenodo.4737807
title: DeepCrime mutations for Udacity self-driving car system

description: This is the dataset of mutations generated for Udacity Dave-2 model by DeepCrime mutation testing tool as part of the "DeepCrime: Mutation Testing of Deep Learning Systems based on Real Faults" paper published at ACM SIGSOFT International Symposium on Software Testing and Analysis (ISSTA) 2021. The second part of this dataset is stored under DOI 10.5281/zenodo.4737810.
DOI: 10.5281/zenodo.4737810
title: DeepCrime and DeepMutation++ mutations for Udacity self-driving car system

description: This is the dataset of mutations generated for Udacity Dave-2 model by DeepCrime and DeepMutation++ mutation testing tools as part of the "DeepCrime: Mutation Testing of Deep Learning Systems based on Real Faults" paper published at ACM SIGSOFT International Symposium on Software Testing and Analysis (ISSTA) 2021. The first part of this dataset is stored under DOI 10.5281/zenodo.4737808.
DOI: 10.5281/zenodo.4737809
title: DeepCrime and DeepMutation++ mutations for Udacity self-driving car system

description: This is the dataset of mutations generated for Udacity Dave-2 model by DeepCrime and DeepMutation++ mutation testing tools as part of the "DeepCrime: Mutation Testing of Deep Learning Systems based on Real Faults" paper published at ACM SIGSOFT International Symposium on Software Testing and Analysis (ISSTA) 2021. The first part of this dataset is stored under DOI 10.5281/zenodo.4737808.
DOI: 10.17632/c9s8b54ksh.1
title: Data for: Microplastic and artificial cellulose microfibers ingestion by reef fishes in the southwestern Atlantic

description: This study evaluated the ingestion of microplastic and artificial cellulose by 103 specimens belonging to 21 reef fish species from the southwestern Atlantic. Nine species ingested particles- seven species both types and three only one kind.
DOI: 10.17632/vfthn4kj72.1
title: Data for: Evaluating the efficiency of survey methods in anuran assemblages of Yungas Andean forests of Argentina

description: Tables for rarefaction curves analysis calculation using iNEXT package ver 2.0.20 in R. Data of several acoustic indices and anuran diversity calculated from our recordings.
DOI: 10.17632/75grxk7jgf.1
title: Data for: Mineral chemistry and timing of the Gapdan pluton and related dykes (Sistan suture zone, SE Iran): a zoned multistage pluton emplaced during progressive deformation and crustal uplift

description: Petrology and U-Pb geochronology of Gapdan Pluton
DOI: 10.17632/6kzhjfnngf.1
title: Data for: Influence of ionic composition on minerals and source rocks: An investigation between carbonate-type and sulfate-type lacustrine sediments based on hydrochemical classification

description: This data includes ion composition, XRD for minerals and relationship between Ion Products of CaSO4 and concentrations of Cl-, and so on.
DOI: 10.15472/dnxzf4
title: Biodiversidad del El Parque Natural Regional Santa Emilia

description: La información de línea base sobre la composición de fauna y flora de un área protegida permite la implementación de prácticas de manejo y conservación efectivas. El Parque Natural Regional (PNR) Santa Emilia se encuentra ubicada en la vertiente oriental de la cordillera Occidental dentro de un rango altitudinal de 1700–28750 msnm, en la zona de influencia directa del Distrito de Manejo Integrado Cuchilla de San Juan, tiene un área total de 528,72 hectáreas. El acceso principal al Parque se realiza por vía terciaria en la vereda Santa Emilia y recorre una distancia de cinco y medio kilómetros desde el casco urbano de Belén de Umbría. Todos los predios del área son propiedad del Estado, han sido adquiridos por CARDER y los Entes Territoriales para la protección del recurso hídrico. La información sobre aves, anfibios y mamíferos consignada en este recurso procede de observaciones realizadas durante el año 1991 por el  Biólogo Victor Ávila para la CARDER. La información sobre vegetación proviene de observaciones realizadas por el Biólogo William Vargas para la CARDER en el año 1999.
DOI: 10.5281/zenodo.4737922
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.6084/m9.figshare.12848843
title: The logarithmic Cauchy quotient mean

description: Motivated by recent results on beta-type functions, a new family of means, which are of logarithmic Cauchy quotient type, are determined and characterized.
DOI: 10.6084/m9.figshare.12848843.v1
title: The logarithmic Cauchy quotient mean

description: Motivated by recent results on beta-type functions, a new family of means, which are of logarithmic Cauchy quotient type, are determined and characterized.
DOI: 10.5517/ccdc.csd.cc279wq5
title: CCDC 2065087: Experimental Crystal Structure Determination

description: Related Article: Nicoleta Caimac, Elena Melnic, Diana Chisca, Marina S. Fonari|2021|CrystEngComm|23|3099|doi:10.1039/D1CE00313E
DOI: 10.5517/ccdc.csd.cc26xxwy
title: CCDC 2053591: Experimental Crystal Structure Determination

description: Related Article: Jie Li, Yi Tan, Chen Cao, Zhi-Kang Wang, Zheng Niu, Ying-Lin Song, Jian-Ping Lang|2021|CrystEngComm|23|3160|doi:10.1039/D1CE00206F
DOI: 10.5517/ccdc.csd.cc27fd03
title: CCDC 2068444: Experimental Crystal Structure Determination

description: Related Article: Weiyang Bi, Yunhui Yang, Song Ye, Congyang Wang|2021|Chem.Commun.|57|4452|doi:10.1039/D1CC01311D
DOI: 10.5517/ccdc.csd.cc266ny1
title: CCDC 2032203: Experimental Crystal Structure Determination

description: Related Article: Hao Gu, Guangbin Cheng, Hongwei Yang|2021|New J.Chem.|45|7758|doi:10.1039/D1NJ00076D
DOI: 10.5517/ccdc.csd.cc2706r7
title: CCDC 2055788: Experimental Crystal Structure Determination

description: Related Article: Gargi Kundu, V. S. Ajithkumar, Milan Kumar Bisai, Srinu Tothadi, Tamal Das, Kumar Vanka, Sakya S. Sen|2021|Chem.Commun.|57|4428|doi:10.1039/D1CC01401C
DOI: 10.5517/ccdc.csd.cc2706s8
title: CCDC 2055789: Experimental Crystal Structure Determination

description: Related Article: Gargi Kundu, V. S. Ajithkumar, Milan Kumar Bisai, Srinu Tothadi, Tamal Das, Kumar Vanka, Sakya S. Sen|2021|Chem.Commun.|57|4428|doi:10.1039/D1CC01401C
DOI: 10.5517/ccdc.csd.cc2706t9
title: CCDC 2055790: Experimental Crystal Structure Determination

description: Related Article: Gargi Kundu, V. S. Ajithkumar, Milan Kumar Bisai, Srinu Tothadi, Tamal Das, Kumar Vanka, Sakya S. Sen|2021|Chem.Commun.|57|4428|doi:10.1039/D1CC01401C
DOI: 10.5517/ccdc.csd.cc2706vb
title: CCDC 2055791: Experimental Crystal Structure Determination

description: Related Article: Gargi Kundu, V. S. Ajithkumar, Milan Kumar Bisai, Srinu Tothadi, Tamal Das, Kumar Vanka, Sakya S. Sen|2021|Chem.Commun.|57|4428|doi:10.1039/D1CC01401C
DOI: 10.5517/ccdc.csd.cc27h15z
title: CCDC 2070030: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Paul J. Low, Josef B. G. Gluyas|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27h0d5
title: CCDC 2070006: Experimental Crystal Structure Determination

description: Related Article: Gargi Kundu, V. S. Ajithkumar, Milan Kumar Bisai, Srinu Tothadi, Tamal Das, Kumar Vanka, Sakya S. Sen|2021|Chem.Commun.|57|4428|doi:10.1039/D1CC01401C
DOI: 10.5517/ccdc.csd.cc278lx1
title: CCDC 2063853: Experimental Crystal Structure Determination

description: Related Article: M. Palacios-Corella, V. García-López, C. Sánchez-Sánchez, J. M. Clemente-Juan, M. Clemente-León, E. Coronado|2021|Dalton Trans.|50|5931|doi:10.1039/D1DT00595B
DOI: 10.5517/ccdc.csd.cc278lz3
title: CCDC 2063855: Experimental Crystal Structure Determination

description: Related Article: M. Palacios-Corella, V. García-López, C. Sánchez-Sánchez, J. M. Clemente-Juan, M. Clemente-León, E. Coronado|2021|Dalton Trans.|50|5931|doi:10.1039/D1DT00595B
DOI: 10.5517/ccdc.csd.cc278m05
title: CCDC 2063856: Experimental Crystal Structure Determination

description: Related Article: M. Palacios-Corella, V. García-López, C. Sánchez-Sánchez, J. M. Clemente-Juan, M. Clemente-León, E. Coronado|2021|Dalton Trans.|50|5931|doi:10.1039/D1DT00595B
DOI: 10.5281/zenodo.4635734
title: Global inequality remotely sensed

description: Dataset for the PNAS paper "Global inequality remotely sensed". For code and additional data please visit: https://github.com/muhusmanmirza/PNAS_light_inequality.git
DOI: 10.5281/zenodo.4635733
title: Global inequality remotely sensed

description: Dataset for the PNAS paper "Global inequality remotely sensed". For code and additional data please visit: https://github.com/muhusmanmirza/PNAS_light_inequality.git
DOI: 10.5281/zenodo.4733293
title: mizuRoute outputs used for the Journal of Advances in Modeling Earth Systems paper "A vector-based river routing model for Earth System Models: Parallelization and global applications"

description: This contains mizuRoute output data and ancillary data used for the publication: Mizukami et al., 2021: A vector-based river routing model for Earth System Models: Parallelization and global applications, Journal of Advances in Modeling Earth Systems. ancillary_data.tar.gz: flow site point geopackages (Dai nd Trenberth Global River dataset and Beck et al. 2015 data) and reach ID and gauge ID link ascii files. See README. clm50-HDMA_daily.tar.gz: daily flow based on CLM runoff at 8,395 gauges on HDMA river network clm50-HDMA_month.tar.gz: monthly flow based on CLM runoff at 8,395 gauges on HDMA river network clm50-MERIT-Hydro_daily.tar.gz: daily flow based on CLM runoff at 15,915 gauges on MERIT-Hydro river network clm50-MERIT-Hydro_month.tar.gz: month flow based on CLM runoff at 15,915 gauges on MERIT-Hydro river network mswep_v1-HDMA_daily.tar.gz: daily flow based on VIC runoff at 8,395 gauges on HDMA river network mswep_v1-HDMA_month.tar.gz: monthly flow based on VIC runoff at 8,395 gauges on HDMA river network mswep_v1-MERIT-Hydro_daily.tar.gz: daily flow based on VIC runoff at 15,915 gauges on MERIT-Hydro river network mswep_v1-MERIT-Hydro_month.tar.gz: monthly flow based on VIC runoff at 15,915 gauges on MERIT-Hydro river network Each netCDF data include: IRFroutedRunoff: IRF routed flow [m3/s] at each reach. KWTroutedRunoff KWT routed flow [m3/s] at each reach reachID: reach ID corresponding to the reach ID from the river network data (HDMA or MERIT-Hydro)
DOI: 10.5281/zenodo.4733292
title: mizuRoute outputs used for the Journal of Advances in Modeling Earth Systems paper "A vector-based river routing model for Earth System Models: Parallelization and global applications"

description: This contains mizuRoute output data and ancillary data used for the publication: Mizukami et al., 2021: A vector-based river routing model for Earth System Models: Parallelization and global applications, Journal of Advances in Modeling Earth Systems. ancillary_data.tar.gz: flow site point geopackages (Dai nd Trenberth Global River dataset and Beck et al. 2015 data) and reach ID and gauge ID link ascii files. See README. clm50-HDMA_daily.tar.gz: daily flow based on CLM runoff at 8,395 gauges on HDMA river network clm50-HDMA_month.tar.gz: monthly flow based on CLM runoff at 8,395 gauges on HDMA river network clm50-MERIT-Hydro_daily.tar.gz: daily flow based on CLM runoff at 15,915 gauges on MERIT-Hydro river network clm50-MERIT-Hydro_month.tar.gz: month flow based on CLM runoff at 15,915 gauges on MERIT-Hydro river network mswep_v1-HDMA_daily.tar.gz: daily flow based on VIC runoff at 8,395 gauges on HDMA river network mswep_v1-HDMA_month.tar.gz: monthly flow based on VIC runoff at 8,395 gauges on HDMA river network mswep_v1-MERIT-Hydro_daily.tar.gz: daily flow based on VIC runoff at 15,915 gauges on MERIT-Hydro river network mswep_v1-MERIT-Hydro_month.tar.gz: monthly flow based on VIC runoff at 15,915 gauges on MERIT-Hydro river network Each netCDF data include: IRFroutedRunoff: IRF routed flow [m3/s] at each reach. KWTroutedRunoff KWT routed flow [m3/s] at each reach reachID: reach ID corresponding to the reach ID from the river network data (HDMA or MERIT-Hydro)
DOI: 10.5517/ccdc.csd.cc25xp82
title: CCDC 2023564: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xnvm
title: CCDC 2023551: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xnyq
title: CCDC 2023554: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp0t
title: CCDC 2023556: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xnzr
title: CCDC 2023555: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp60
title: CCDC 2023562: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp5z
title: CCDC 2023561: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xnwn
title: CCDC 2023552: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xnxp
title: CCDC 2023553: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp1v
title: CCDC 2023557: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp2w
title: CCDC 2023558: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp3x
title: CCDC 2023559: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp4y
title: CCDC 2023560: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp71
title: CCDC 2023563: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xp93
title: CCDC 2023565: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc25xpb4
title: CCDC 2023566: Experimental Crystal Structure Determination

description: Related Article: Chun-Yan Qin, Sheng-Ze Zhao, Hua-Yu Wu, Yong-Hua Li, Zi-Kun Wang, Zheng Wang, Shi Wang|2021|Dalton Trans.|50|5899|doi:10.1039/D0DT04109B
DOI: 10.5517/ccdc.csd.cc27kqk3
title: CCDC 2072615: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold, Sarah Chachula and Milan Gembicky|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2735fz
title: CCDC 2058630: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Zvonko Jagličić, Paula Brandão, Sarmistha Adak, Amrita Saha, Anangamohan Panja|2021|New J.Chem.|45|7602|doi:10.1039/D1NJ00708D
DOI: 10.5517/ccdc.csd.cc2735h1
title: CCDC 2058632: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Zvonko Jagličić, Paula Brandão, Sarmistha Adak, Amrita Saha, Anangamohan Panja|2021|New J.Chem.|45|7602|doi:10.1039/D1NJ00708D
DOI: 10.5517/ccdc.csd.cc2735g0
title: CCDC 2058631: Experimental Crystal Structure Determination

description: Related Article: Narayan Ch. Jana, Zvonko Jagličić, Paula Brandão, Sarmistha Adak, Amrita Saha, Anangamohan Panja|2021|New J.Chem.|45|7602|doi:10.1039/D1NJ00708D
DOI: 10.5517/ccdc.csd.cc27lddn
title: CCDC 2073261: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27ldfp
title: CCDC 2073262: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2021|CSD Communication|||
DOI: 10.5281/zenodo.3567172
title: Austropuccinia psidii, causing myrtle rust, has a gigabase-sized genome shaped by transposable elements

description: <em>Austropuccinia psidii</em>, originating in South America, is a globally invasive fungal plant pathogen that causes rust disease on Myrtaceae. Several biotypes are recognized, with the most widely distributed pandemic biotype spreading throughout the Asia-Pacific and Oceania regions over the last decade. <em>Austropuccinia</em><em> psidii</em> has a broad host range with more than 480 myrtaceous species. Since first detected in Australia in 2010, the pathogen has caused the near extinction of at least three species and negatively affected commercial production of several Myrtaceae. To enable molecular and evolutionary studies into <em>A. psidii</em> pathogenicity, we assembled a highly contiguous genome for the pandemic biotype. With an estimated haploid genome size of just over 1 Gb (gigabases), it is the largest assembled fungal genome to date. The genome has undergone massive expansion via distinct transposable element (TE) bursts. Over 90% of the genome is covered by TEs predominantly belonging to the Gypsy superfamily. These TE bursts have likely been followed by deamination events of methylated cytosines to silence the repetitive elements. This in turn led to the depletion of CpG sites in transposable elements and a very low overall GC content of 33.8%. The overall gene content is highly conserved, when compared to other closely related Pucciniales, yet the intergenic distances are increased by an order of magnitude indicating a general insertion of TEs between genes. Overall, we show how transposable elements shaped the genome evolution of <em>A. psidii</em> and provide a greatly needed resource for strategic approaches to combat disease spread. Please cite the authors if using this data: https://academic.oup.com/g3journal/article/11/3/jkaa015/6007476
description: This is the di-haploid genome assembly for the pandemic strain of Austropuccinia psidii. Locus tags are registered as APSI (for Austropuccinia psidii) and scaffolds identified as APSI_P/Hxxx (where P indicates primary, H indicates secondary assembly and x indicates scaffold number).
DOI: 10.5281/zenodo.3567171
title: Austropuccinia psidii, causing myrtle rust, has a gigabase-sized genome shaped by transposable elements

description: <em>Austropuccinia psidii</em>, originating in South America, is a globally invasive fungal plant pathogen that causes rust disease on Myrtaceae. Several biotypes are recognized, with the most widely distributed pandemic biotype spreading throughout the Asia-Pacific and Oceania regions over the last decade. <em>Austropuccinia</em><em> psidii</em> has a broad host range with more than 480 myrtaceous species. Since first detected in Australia in 2010, the pathogen has caused the near extinction of at least three species and negatively affected commercial production of several Myrtaceae. To enable molecular and evolutionary studies into <em>A. psidii</em> pathogenicity, we assembled a highly contiguous genome for the pandemic biotype. With an estimated haploid genome size of just over 1 Gb (gigabases), it is the largest assembled fungal genome to date. The genome has undergone massive expansion via distinct transposable element (TE) bursts. Over 90% of the genome is covered by TEs predominantly belonging to the Gypsy superfamily. These TE bursts have likely been followed by deamination events of methylated cytosines to silence the repetitive elements. This in turn led to the depletion of CpG sites in transposable elements and a very low overall GC content of 33.8%. The overall gene content is highly conserved, when compared to other closely related Pucciniales, yet the intergenic distances are increased by an order of magnitude indicating a general insertion of TEs between genes. Overall, we show how transposable elements shaped the genome evolution of <em>A. psidii</em> and provide a greatly needed resource for strategic approaches to combat disease spread. Please cite the authors if using this data: https://academic.oup.com/g3journal/article/11/3/jkaa015/6007476
description: This is the di-haploid genome assembly for the pandemic strain of Austropuccinia psidii. Locus tags are registered as APSI (for Austropuccinia psidii) and scaffolds identified as APSI_P/Hxxx (where P indicates primary, H indicates secondary assembly and x indicates scaffold number).
DOI: 10.48577/9ge4og/bsmz9v
title: MANIFEST.TXT

description: :unav
DOI: 10.48577/9ge4og/dcdox4
title: CEP_ES_Examples.ipynb

description: :unav
DOI: 10.48577/9ge4og/zdsdgv
title: README.md

description: :unav
DOI: 10.48577/9ge4og/wh8e4v
title: CEP_Kafka_Consumer_Example.ipynb

description: :unav
DOI: 10.48577/9ge4og/unjztr
title: dataItem_schema_pb2.py

description: :unav
DOI: 10.48577/9ge4og/retkyt
title: requirements.txt

description: :unav
DOI: 10.48577/9ge4og/qe9qi5
title: README.md

description: :unav
DOI: 10.48577/9ge4og/aj7usc
title: environment.yml

description: :unav
DOI: 10.48577/9ge4og/gndcpj
title: monitor_consumer.py

description: :unav
DOI: 10.48577/9ge4og
title: Deep Space Network Complex Event Processor (DSN CEP) Notebooks

description: The CEP team has created the infrastructure to supply monitor data to end users through Kafka and Elasticsearch. This dataset contains python notebooks and scripts that demonstrate how to stream monitor data from Kafka, and how to query historical monitor data with Elasticsearch. It can be run using jupyterhub!