cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/vx0-j06-3ph
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3bt-t6e-j6q
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/slm-yjt-z1f
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tk0-gzb-1sn
title: Megalomys Trouessart, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x6g-rgj-xpj
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/08x-127-pm5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gcr-79q-9r6
title: Myodes Pallas, 1811

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n9y-0t3-qtf
title: Capra Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.jr9wh6
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Foeniculum vulgare",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023494-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/lr9-7df-3ae
title: Aves

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t3q-baw-f1l
title: Cervus elaphus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rh7-dcr-ktm
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9c-722-ypk
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1gc-4lw-1wx
title: †Prolagus Pomel, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m2f-116-pc8
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n1g-qt3-tf3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p0f-83g-q5r
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fq8-48w-psp
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kg8-qh7-q14
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fm9-y2z-a53
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s17-hxs-k4y
title: †Prolagus Pomel, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9feyx5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Foeniculum vulgare",
 "Country is Korea (Democratic People’s Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023495-250811113504898/datasets/export for details.
DOI: 10.3535/50q-jmr-atf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.p8ffzf
title: Occurrence Download

description: A dataset containing 31022 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sesamum L."
 ]
}

 The dataset includes 31022 records from 454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002439-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28858673
title: qPCR oriC ter ratio run data summary.xlsx

description: This is the updated excel file for the new data and new normalized control. <br>
DOI: 10.6084/m9.figshare.28858673.v1
title: qPCR oriC ter ratio run data summary.xlsx

description: This is the updated excel file for the new data and new normalized control. <br>
DOI: 10.15468/dl.msj9x4
title: Occurrence Download

description: A dataset containing 64775 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iduna caligata (Lichtenstein, 1823)"
 ]
}

 The dataset includes 64775 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000332-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14635566
title: Dataset for article "Embodiment of an artificial limb in mice"

description: Description of the dataset

This is the eye tracking data that was generated and analysed in the context of our article "Embodiment of an artificial limb in mice". 

A simple ipython notebook is provided (Hayatou_et_al_PLOS_Biology_Data.ipynb) to guide the opening of the eye tracking data. An additional CSV file contains the precise time of the threats that were presented to the mice.  Finally, a second ipython notebook provides code to reconstruct all plots of the article from the provided data (Hayatou_et_al_PLOS_Biology_Full_Code.ipynb). 

Article abstract

Body ownership disorders can be triggered by disease or body damage. Methods to probe limb embodiment are required to address those disorders. This includes the development of neuroprostheses that better integrate into the body scheme of the user. To this end, the “rubber hand illusion” protocol is a key behavioural method to probe the powerful embodiment that can be triggered by congruent somatosensory and visual inputs from the limb.So far, the neurophysiology of limb embodiment remains poorly known, in part because translating the rubber hand illusion to animal models such as the mouse remains challenging. Yet, mapping out the brain circuits of embodiment thanks to the use of genetic and optogenetic research tools would allow to propose novel embodiment restoration strategies.Here we show that the rubber hand illusion described in humans can be translated to the mouse forelimb model using an automated, videography-based procedure. We exposed head-fixed mice to a visible, static 3D-printed replica of the right forelimb, while their own forelimb was hidden from their sight. We synchronously brushed their hidden forelimb and the replica. Following these visuo-tactile associations, the replica was visually threatened, and we probed the reaction of the mice using automated tracking of pupils and facial expression. The mice focused significantly more their gaze towards the threatened forelimb replica after receiving synchronous tactile and visual information compared to asynchronous. More generally, across test and control conditions, the mouse pupillary response was consistent with the human overt response to the rubber hand illusion. Thus, our results show that mice exhibit quantifiable behavioural markers of the embodiment of an artificial forelimb.
DOI: 10.5281/zenodo.15276765
title: Dataset for article "Embodiment of an artificial limb in mice"

description: Description of the dataset

This is the eye tracking data that was generated and analysed in the context of our article "Embodiment of an artificial limb in mice". 

A simple ipython notebook is provided (Hayatou_et_al_PLOS_Biology_Data.ipynb) to guide the opening of the eye tracking data. An additional CSV file contains the precise time of the threats that were presented to the mice.  Finally, a second ipython notebook provides code to reconstruct all plots of the article from the provided data (Hayatou_et_al_PLOS_Biology_Full_Code.ipynb). 

Article abstract

Body ownership disorders can be triggered by disease or body damage. Methods to probe limb embodiment are required to address those disorders. This includes the development of neuroprostheses that better integrate into the body scheme of the user. To this end, the “rubber hand illusion” protocol is a key behavioural method to probe the powerful embodiment that can be triggered by congruent somatosensory and visual inputs from the limb.So far, the neurophysiology of limb embodiment remains poorly known, in part because translating the rubber hand illusion to animal models such as the mouse remains challenging. Yet, mapping out the brain circuits of embodiment thanks to the use of genetic and optogenetic research tools would allow to propose novel embodiment restoration strategies.Here we show that the rubber hand illusion described in humans can be translated to the mouse forelimb model using an automated, videography-based procedure. We exposed head-fixed mice to a visible, static 3D-printed replica of the right forelimb, while their own forelimb was hidden from their sight. We synchronously brushed their hidden forelimb and the replica. Following these visuo-tactile associations, the replica was visually threatened, and we probed the reaction of the mice using automated tracking of pupils and facial expression. The mice focused significantly more their gaze towards the threatened forelimb replica after receiving synchronous tactile and visual information compared to asynchronous. More generally, across test and control conditions, the mouse pupillary response was consistent with the human overt response to the rubber hand illusion. Thus, our results show that mice exhibit quantifiable behavioural markers of the embodiment of an artificial forelimb.
DOI: 10.15468/dl.8pkpgj
title: Occurrence Download

description: A dataset containing 199238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloscopus trochiloides (Sundevall, 1837)"
 ]
}

 The dataset includes 199238 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000331-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tw46a
title: Occurrence Download

description: A dataset containing 8583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Botswana",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Squamata, Testudines, Crocodylus Laurenti, 1768)"
 ]
}

 The dataset includes 8583 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011067-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10023262
title: ChiWUG: Diachronic Word Usage Graphs for Chinese

description: This data collection contains diachronic Word Usage Graphs (WUGs) for Chinese. Find a description of the data format, code to process the data and further datasets on the WUGsite.

Please find more information on the provided data in the paper referenced below.

Version: 1.0.0, 19.10.2023. Paper version.

Reference

Jing Chen, Emmanuele Chersoni, Dominik Schlechtweg, Jelena Prokic, Chu-Ren Huang. 2023. ChiWUG: A Graph-based Evaluation Dataset for Chinese Lexical Semantic Change Detection. Proceedings of the 4th International Workshop on Computational Approaches to Historical Language Change 2023 (LChange'23).
description: Paper version.

Republication and redistribution is prohibited.
DOI: 10.15468/dl.hdf7h8
title: Occurrence Download

description: A dataset containing 289278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anser albifrons (Scopoli, 1769)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 289278 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002563-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j2nxmz
title: Occurrence Download

description: A dataset containing 7262 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Neotoma lepida Thomas, 1893",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 7262 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002567-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njsggp
title: Occurrence Download

description: A dataset containing 220421 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parnassius Latreille, 1804"
 ]
}

 The dataset includes 220421 records from 771 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002561-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ya89b2
title: Occurrence Download

description: A dataset containing 13620 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Tamias minimus Bachman, 1839",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 13620 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002571-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15446684
title: Solitary phytoplankton cells sink in the mesopelagic ocean: Data and code

description: This repository include an python notbook and all necessary datafiles required to reproduce the analysis presented by Bodel et al. in the manuscript entitled "Solitary phytoplankton cells sink in the mesopelagic ocean".

EXPORTS_Cell_fluxes_github.ipynb - This is the notebook containing all the code

csv files- these contain the cell fluxes collectedi in sediment trap gel layers, generated by microscopy. Also bulk sediment trap chemical fluxes, detrital particle fluxes generated by microscopy imaging of the gel layers, and all metadata associated with sample names.
DOI: 10.5281/zenodo.15446685
title: Solitary phytoplankton cells sink in the mesopelagic ocean: Data and code

description: This repository include an python notbook and all necessary datafiles required to reproduce the analysis presented by Bodel et al. in the manuscript entitled "Solitary phytoplankton cells sink in the mesopelagic ocean".

EXPORTS_Cell_fluxes_github.ipynb - This is the notebook containing all the code

csv files- these contain the cell fluxes collectedi in sediment trap gel layers, generated by microscopy. Also bulk sediment trap chemical fluxes, detrital particle fluxes generated by microscopy imaging of the gel layers, and all metadata associated with sample names.
DOI: 10.3886/mjkd-ax95
title: Morocco Compact - Small-Scale Fisheries (Final): Fisheries Survey Data - Baseline & Endline (Restricted)
DOI: 10.3886/mz56-ns68
title: Morocco Compact - Small-Scale Fisheries (Final): Fisheries Survey Data - Baseline & Endline (Restricted)
DOI: 10.5281/zenodo.15446651
title: 1000-Hour Fuel Moisture Trends in the Columbia River Basin (1979–2024)

description: 1000-Hour Fuel Moisture Trends in the Columbia River Basin (1979–2024)

This is a three-part research package submitted to Zenodo. It is supported by the companion Jupyter Notebook ’logan_2025_crb-fm1000_notebook_v1.ipynb’, which contains all source code, data diagnostics, and visualizations referenced herein. The PDF version of that notebook is ‘logan_2025_crb-fm1000_notebook_v1.pdf’ . The PDF version of the summary document is 'logan_2025_crb-fm1000_summary_v1.pdf'

Contact: Jeffrey Logan, Earth and Spatial Sciences, University of Idaho 

Email: jeffrey.logan@uidaho.edu 

ORCID: 0009-0001-9415-5809
DOI: 10.5281/zenodo.15446652
title: 1000-Hour Fuel Moisture Trends in the Columbia River Basin (1979–2024)

description: 1000-Hour Fuel Moisture Trends in the Columbia River Basin (1979–2024)

This is a three-part research package submitted to Zenodo. It is supported by the companion Jupyter Notebook ’logan_2025_crb-fm1000_notebook_v1.ipynb’, which contains all source code, data diagnostics, and visualizations referenced herein. The PDF version of that notebook is ‘logan_2025_crb-fm1000_notebook_v1.pdf’ . The PDF version of the summary document is 'logan_2025_crb-fm1000_summary_v1.pdf'

Contact: Jeffrey Logan, Earth and Spatial Sciences, University of Idaho 

Email: jeffrey.logan@uidaho.edu 

ORCID: 0009-0001-9415-5809
DOI: 10.15468/dl.ze65pt
title: Occurrence Download

description: A dataset containing 56745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Orbilia sarraziniana Boud., Orbilia auricolor (A.Bloxam) Sacc., Orbilia luteorubella (Nyl.) P.Karst., Phaeoisaria clavulata (Grove) E.W.Mason & S.Hughes, Nectria flavoviridis (Fuckel) Wollenw., Triblidium octosporum D.Hawksw. & Coppins, Rosellinia mammiformis (Pers.) Ces. & De Not., Venturia fraxini Aderh., Zignoella rhytidodes (Berk. & Broome) Sacc., Eutypa lata (Pers.) Tul. & C.Tul., Lachnum pygmaeum (Fr.) Bres., Protocrea farinosa (Berk. & Broome) Petch, Nitschkia confertula (Schwein.) Nannf., Botryobasidium ellipsosporum Hol.-Jech., Basidiodendron caesiocinereum (Höhn. & Litsch.) Luck-Allen, Coronicium gemmiferum (Bourdot & Galzin) J.Erikss. & Ryvarden, Crepidotus luteolus Sacc., Flagelloscypha punctiformis (Fr.) Agerer, Dacrymyces enatus (Berk. & M.A.Curtis) Massee, Kuehneromyces leucolepidotus (P.D.Orton) Pegler & T.W.K.Young, Hypochnella violacea Auersw. ex J.Schröt., Lindtneria trachyspora (Bourdot & Galzin) Pilát, Peniophora violaceolivida (Sommerf.) Massee, Pholiota lucifera (Lasch) Quél., Peniophora limitata (Chaillet ex Fr.) Cooke, Phanerochaete jose-ferreirae (D.A.Reid) D.A.Reid, Radulomyces molaris (Chaillet ex Fr.) M.P.Christ., Sistotrema diademiferum (Bourdot & Galzin) Donk, Tricholomopsis rutilans (Schaeff.) Singer, Trechispora praefocata (Bourdot & Galzin) Liberta, Tulasnella helicospora Raunk., Tubaria confragosa (Fr.) Harmaja, Tubulicrinis regificus (H.S.Jacks. & Dearden) Donk, Typhula lutescens Boud., Costantinella terrestris (Link) S.Hughes, Cryptocoryneum rilstonei M.B.Ellis, Barrmaelia oxyacanthae (Mont.) Rappaz, Kavinia alboviridis (Morgan) Gilb. & Budington, Phaeogalera dissimulans (Berk. & Broome) Holec, Hymenoscyphus laetus (Boud.) Dennis, Bactrodesmium abruptum (Berk. & Broome) E.W.Mason & S.Hughes, Coleophoma empetri (Rostr.) Petr., Cucurbitaria obducens (Schumach.) Petr., Otthia spiraeae (Fuckel) Fuckel, Diaporthe eres Nitschke, Cryptovalsa protracta (Pers.) De Not., Encoelia fascicularis (Alb. & Schwein.) P.Karst., Crocicreas coronatum (Bull.) S.E.Carp., Ramaria abietina (Pers.) Quél., Hysterographium fraxini (Pers.) De Not.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56745 records from 504 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002566-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5x64s
title: Occurrence Download

description: A dataset containing 1647265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anser anser (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 1647265 records from 360 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002568-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffketn
title: Occurrence Download

description: A dataset containing 14323 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Larus canus Linnaeus, 1758",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 14323 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029792-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4geprr
title: Occurrence Download

description: A dataset containing 1645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Cyclopia Vent."
 ]
}

 The dataset includes 1645 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029793-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/ds/7414045
title: Surabaya Housing Dataset