cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2vff7732yp.1
title: Supplemental material for PhD thesis Clinical (glyco)proteomics

description: Supplemental material for PhD thesis "Clinical (glyco)proteomics: From pre-clinical discovery to translational diagnostics in infectious disease and complement deficiency".

Chapter 1: Introduction and scope of this thesis
Chapter 2: Biosynthetic homeostasis and resilience of the complement system in health and infectious disease
Chapter 3: Quantitative multiplex profiling of the complement system to diagnose complement-mediated diseases
Chapter 4: Semi-quantitative multiplex profiling of the complement system identifies associations of complement proteins with genetic variants and metabolites in age-related macular degeneration
Chapter 5: Impact of infection on host protein glycosylation and the discovery of novel biomarkers to differentiate bacterial from viral infection
Chapter 6: Discussion and future perspectives


The full PhD thesis is available through the Radboud University Repository at https://repository.ubn.ru.nl/
© These supplementary data have been published previously with the original open access publications. Please cite the original publications when referring to these data.
DOI: 10.17632/r5t885ppf9.2
title: Bioautographic determination of antioxidants and carbohydrate hydrolysing enzymes activity of the aqueous cold extract of Adansonia digitata L fruit coupled with UPLC-MS metabolite identifications.

description: We conducted HPTLC for metabolite derivatization and used bioautography for qualitative estimation of the antioxidant and the carbohydrate hydrolyzing enzyme inhibitory potential of the fruit. Tentative screening for metabolomics was conducted with UPLC-MS.
DOI: 10.17632/f9xd5zp8mp.1
title: VQUAD Surveillance Video Quality Database

description: This is a subjective quality database for surveillance videos. This database has been built in the framework of the NPRP project (NPRP No.8 - 140 - 2 – 065) funded by the QNRF.  

Leader Principal Investigator (LPI) Azeddine Beghdadi 
Co-LPI Noor Al Madeed 

Principal Investigators (PIs): 
Ismail Bezzine, Zohaib Amjad, Khan, Mounir Kaaniche,  Somaya Al Madeed, Ahmed Bouridane, Faouzi Alaya Cheikh

How to cite the database: 


Contact : Prof. Azeddine Beghdadi, L2TI, Université Sorbonne Paris Nord (Email: azeddine.beghdadi@univ-paris13.fr)

For more details and citation check the following paper:

I. Bezzine, I., Khan, Z.A., Beghdadi, A., Al-Maadeed, N., Kaaniche, M., Al-Maadeed, S., Bouridane, A. and Cheikh, F.A., 2020, November. Video Quality Assessment Dataset for Smart Public Security Systems. In 2020 IEEE 23rd International Multitopic Conference (INMIC) (pp. 1-5). IEEE.,  DOI: 10.1109/INMIC50486.2020.9318149.
DOI: 10.5517/ccdc.csd.cc2896qj
title: CCDC 2094227: Experimental Crystal Structure Determination

description: Related Article: Alberto Marbán-González, Gaspar Maravilla-Moreno, Josué Vazquez-Chavez, Marcos Hernández-Rodríguez, Rodrigo Said Razo-Hernández, Mario Ordóñez, José Luis Viveros-Ceballos|2021|J.Org.Chem.|86|16361|doi:10.1021/acs.joc.1c01757
DOI: 10.5517/ccdc.csd.cc2896rk
title: CCDC 2094228: Experimental Crystal Structure Determination

description: Related Article: Alberto Marbán-González, Gaspar Maravilla-Moreno, Josué Vazquez-Chavez, Marcos Hernández-Rodríguez, Rodrigo Said Razo-Hernández, Mario Ordóñez, José Luis Viveros-Ceballos|2021|J.Org.Chem.|86|16361|doi:10.1021/acs.joc.1c01757
DOI: 10.6084/m9.figshare.17122442
title: LNCaP LC-MS/MSLC-MS/MS for tryptophan catabolites

description: LNCaP cells trytophan catabolites analysis by LC-MS/MS (ABSciex 5500).<br>
DOI: 10.6084/m9.figshare.17122442.v1
title: LNCaP LC-MS/MSLC-MS/MS for tryptophan catabolites

description: LNCaP cells trytophan catabolites analysis by LC-MS/MS (ABSciex 5500).<br>
DOI: 10.6084/m9.figshare.17122700
title: H660_3_1.fq.gz

description: RNAseq sequence read in fastq format
DOI: 10.6084/m9.figshare.17122616
title: H660_2_2.fq.gz

description: RNAseq sequence read in fastq format
DOI: 10.6084/m9.figshare.17122376
title: H660_1_1.fq.gz

description: RNAseq sequence read in fastq format<br>
DOI: 10.6084/m9.figshare.17122445
title: H660_1_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17122700.v1
title: H660_3_1.fq.gz

description: RNAseq sequence read in fastq format
DOI: 10.6084/m9.figshare.17122538.v1
title: H660_2_1.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17122616.v1
title: H660_2_2.fq.gz

description: RNAseq sequence read in fastq format
DOI: 10.6084/m9.figshare.17122538
title: H660_2_1.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17122745
title: H660_3_2.fq.gz

description: RNAseq sequence read in fastq format
DOI: 10.6084/m9.figshare.17122745.v1
title: H660_3_2.fq.gz

description: RNAseq sequence read in fastq format
DOI: 10.6084/m9.figshare.17122376.v1
title: H660_1_1.fq.gz

description: RNAseq sequence read in fastq format<br>
DOI: 10.6084/m9.figshare.17122445.v1
title: H660_1_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124563
title: LNCaP_3_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124572
title: gene_expected_transcript_count.tsv.gz

description: Raw transcript count matrix in tsv format<br>
DOI: 10.6084/m9.figshare.17124554
title: LNCaP_3_1.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124539
title: LNCaP_2_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124539.v1
title: LNCaP_2_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124503
title: LNCaP_1_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124554.v1
title: LNCaP_3_1.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124503.v1
title: LNCaP_1_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124518
title: LNCaP_2_1.fq.gz

description: RNAseq sequence reads in fastq format
DOI: 10.6084/m9.figshare.17124518.v1
title: LNCaP_2_1.fq.gz

description: RNAseq sequence reads in fastq format
DOI: 10.6084/m9.figshare.17124563.v1
title: LNCaP_3_2.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124488
title: LNCaP_1_1.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.6084/m9.figshare.17124572.v1
title: gene_expected_transcript_count.tsv.gz

description: Raw transcript count matrix in tsv format<br>
DOI: 10.6084/m9.figshare.17124488.v1
title: LNCaP_1_1.fq.gz

description: RNAseq sequence reads in fastq format<br>
DOI: 10.5281/zenodo.5758671
title: Dataset for the manuscript "ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the central canal"

description: Description: Dataset that supports the expansion-STED and light sheet microscopy methods in spinal cord and support the findings in the manuscript: ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the central canal (Elham Jalalvand, Jonatan Alvelid, Giovanna Coceano, Steven Edwards, Brita Robertson, Sten Grillner, Ilaria Testa). The software used to open the files and perform the analysis: Imspector v0.10_rev8575 and ImageJ 1.52i
description: We thank the the SciLifeLab SFO funding, the GGS foundation and the Swedish Foundation for Strategic Research for supporting the project FFL15-0031, and grants from The Swedish Research Council to SG (2021-01995).
DOI: 10.25934/pr00003667.0
title: Available IPD datapackage for study 'A Phase III, Randomised, Double-blind, Parallel Group, 24 Week Study to Evaluate Efficacy and Safety of Once Daily Empagliflozin 10 mg and 25 mg Compared to Placebo, All Administered as Oral Fixed Dose Combinations With Linagliptin 5 mg, in Patients With Type 2 Diabetes Mellitus and Insufficient Glycaemic Control After 16 Weeks Treatment With Linagliptin 5 mg Once Daily on Metformin Background Therapy.'

description: This trial compare the use of two different doses of Empagliflozin to placebo, in T2DM patients on 16 wks linagliptin treatment and metformin background therapy.
DOI: 10.5281/zenodo.5749859
title: From the Horse's Mouth: The Words We Use to Teach Diverse Student Groups Across Three Continents

description: Word frequency pairs for courses A, B, C from: Brett A. Becker, Daniel Gallagher, Paul Denny, James Prather, Colleen Gostomski, Kelli Norris, and Garrett Powell. 2022. From the Horse’s Mouth: The Words We Use to Teach Diverse Student Groups Across Three Continents. In Proceedings of the 53rd ACM Technical Symposium on Computer Science Education V. 1 (SIGCSE 2022), March 3–5, 2022, Providence, RI, USA. ACM, New York, NY, USA, 7 pages. https://doi.org/10.1145/3478431.3499392 <strong>When referring to this dataset, please cite the above article. That contains the DOI of this dataset. Please do not cite this dataset directly without citing the article.</strong>
DOI: 10.5281/zenodo.5749858
title: From the Horse's Mouth: The Words We Use to Teach Diverse Student Groups Across Three Continents

description: Word frequency pairs for courses A, B, C from: Brett A. Becker, Daniel Gallagher, Paul Denny, James Prather, Colleen Gostomski, Kelli Norris, and Garrett Powell. 2022. From the Horse’s Mouth: The Words We Use to Teach Diverse Student Groups Across Three Continents. In Proceedings of the 53rd ACM Technical Symposium on Computer Science Education V. 1 (SIGCSE 2022), March 3–5, 2022, Providence, RI, USA. ACM, New York, NY, USA, 7 pages. https://doi.org/10.1145/3478431.3499392 <strong>When referring to this dataset, please cite the above article. That contains the DOI of this dataset. Please do not cite this dataset directly without citing the article.</strong>
DOI: 10.5281/zenodo.5760337
title: Accuracy Study and Improvement of Network Simulation in the SimGrid Framework (datasets)

description: Data sets and code for https://hal.inria.fr/inria-00361031 and the Rescience replication. The content.org file is the content of the Rescience article from which all the commands for the replication can be found.
DOI: 10.5281/zenodo.5752410
title: Accuracy Study and Improvement of Network Simulation in the SimGrid Framework (datasets)

description: Data sets and code for https://hal.inria.fr/inria-00361031 and the Rescience replication. The content.org file is the content of the Rescience article from which all the commands for the replication can be found.
DOI: 10.5281/zenodo.5760324
title: Experiences Implementing and Utilizing a Notional Machine in the Classroom

description: <strong>Notional Machine Specification for:</strong> <br> Paul E. Dickson, Tim Richards, and Brett A. Becker. 2022. Experiences Implementing and Utilizing a Notional<br> Machine in the Classroom. In Proceedings of the 53rd ACM Technical Symposium on Computer Science<br> Education V. 1 (SIGCSE 2022), March 3–5, 2022, Providence, RI, USA. ACM, New York, NY, USA, 7 pages.<br> https://doi.org/10.1145/3478431.3499320<br> <strong>When referring to this dataset, please cite the above article. That contains the DOI of this dataset. Please do<br> not cite this dataset directly without citing the article.</strong>
DOI: 10.5281/zenodo.5760323
title: Experiences Implementing and Utilizing a Notional Machine in the Classroom

description: <strong>Notional Machine Specification for:</strong> <br> Paul E. Dickson, Tim Richards, and Brett A. Becker. 2022. Experiences Implementing and Utilizing a Notional<br> Machine in the Classroom. In Proceedings of the 53rd ACM Technical Symposium on Computer Science<br> Education V. 1 (SIGCSE 2022), March 3–5, 2022, Providence, RI, USA. ACM, New York, NY, USA, 7 pages.<br> https://doi.org/10.1145/3478431.3499320<br> <strong>When referring to this dataset, please cite the above article. That contains the DOI of this dataset. Please do<br> not cite this dataset directly without citing the article.</strong>
DOI: 10.17863/cam.64033
title: Research data supporting ''Imaging the coherent propagation of collective modes in the excitonic insulator Ta2NiSe5 at room temperature''

description: Using a widefield pump-probe microscope (with ~10 nm spatial precision and ~10 fs time resolution) we probe the temperature and fluence dependent dynamics of the collective modes in excitonic insulator candidate Ta2NiSe5. We pump with a broadband pulse centered around 500 nm and probe ~800 nm using a bandpass filter.
description: The calculations were run on the Beo05 cluster at the University of Fribourg. We acknowledge the CECAM workshop “Excitonic insulator: New perspectives in long-range interacting systems” at EPFL Lausanne for insights and discussions and for providing the opportunity to start this collaboration. We also thank A. Boris (Max Planck Institute for Solid State Research) and A. Musser (Cornell University) for helpful discussions. Funding: H.M.B., P.A., and A.R. acknowledge support from the Winton Programme for the Physics of Sustainability, the Engineering and Physical Sciences Research Council, and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement 758826). N.R.C. acknowledges funding from the Engineering and Physical Sciences Research Council (EPSRC grant no. EP/P034616/1). Y.M. thanks the Japan Society for the Promotion of Science and the Japan Science and Technology Agency for funding through KAKENHI grant no. JP19K23425 and JST CREST grant no. JPMJCR1901. P.W. acknowledges funding from the ERC Consolidator grant no. 724103 and from the Swiss National Science Foundation via NCCR Marvel. A.K.S. thanks the Department of Science and Technology, India for support under Nanomission and Year of Science Professorship. L.H. acknowledges the financial support from the Department of Science and Technology (DST), India [grant no. SR/WOS-A/PM-33/2018 (G)] and IISER Pune for providing the facilities for crystal growth and characterization. B.R. acknowledges support from the Cambridge International Trust and Wolfson College, Cambridge. D.G. is supported by the Slovenian Research Agency (ARRS) under program nos. P1-0044 and J1-2455. N.R.C., A.J.M., and D.G. acknowledge support from the Simons Foundation.
DOI: 10.6084/m9.figshare.17128607
title: Supplementary Material for: Exploring the Policies Applied to Pharmaceutical Care Practice for Type 2 Diabetes over the Last Decade in European Community Pharmacies

description: In the last decade (2010–2020), more than half of European countries have improved their health policies within the primary care for type 2 <i>diabetes mellitus</i>. Community pharmacies have been and could continue to be essential actors in this evolution of fighting the disease by providing a set of pharmacotherapeutic follow-up services for the person with diabetes. These services, designated by the Pharmaceutical Group of the European Union as “<i>diabetes management</i>” and “<i>glucose measurement</i>”, have aimed to optimize adherence to therapy and improve health outcomes. However, to follow the European guidelines of Good Pharmacy Practice, providing these services implies having a normative framework or a legal basis. Thus, this study sought to analyze the normative and regulatory framework on which community pharmacies in 28 European countries were based on providing this health care over the last decade.
DOI: 10.5281/zenodo.5760361
title: Data set from: Robot-Assisted Gait Training in Patients with Multiple Sclerosis: A Randomized Controlled Crossover Trial.

description: Data set from the paper "Robot-Assisted Gait Training in Patients with Multiple Sclerosis: A Randomized Controlled Crossover Trial" doi: 10.3390/medicina57070713
DOI: 10.5281/zenodo.5760360
title: Data set from: Robot-Assisted Gait Training in Patients with Multiple Sclerosis: A Randomized Controlled Crossover Trial.

description: Data set from the paper "Robot-Assisted Gait Training in Patients with Multiple Sclerosis: A Randomized Controlled Crossover Trial" doi: 10.3390/medicina57070713
DOI: 10.5281/zenodo.5734539
title: Diversity - eine schriftliche Diskussionsreihe von und mit Studierenden

description: Dies ist ein eigeninitiiertes Projekt von Christiane Arndt und Lehramtsstudierenden. Es entstand im Rahmen eines Einführungsseminars zu Diversity und will Studierenden ermöglichen, ihre schriftlichen Beiträge zu veröffentlichen und damit ein breiteres Publikum zu erreichen. Die daraus entstehende Reihe, die hier über Versionen kontinuierlich ergänzt werden wird, spiegelt die Vielfalt der Themen, Zugänge und Umsetzungsansätze der Studierenden wider. Die Reihe beginnt mit zwei Beiträgen. Der erste Beitrag wurde von drei Autorinnen verfasst und ist als Leitfaden angelegt, der sich geschlechtersensibler Sprache im Unterricht widmet. Dieses Dokument ist nicht barrierefrei. Der zweite Beitrag setzt sich anhand einer Interviewstudie mit institutioneller Diskriminierung von jungen Erwachsenen mit Fluchtgeschichte im Rahmen von schulischen Integrationsklassen auseinander. Das Dokument wurde in MS Office auf Barrieren geprüft. Alle Dokumente sind auf Deutsch. This is a self-initiated project by Christiane Arndt and teacher training students. It was developed in an introductory seminar on diversity and aims at enabling students to publish their written contributions and to reach a larger audience. The series of articles, which will be supplemented here, show the variety of topics, approaches and accounts of the students. The series begins with two articles. The first one was conceptually designed as a manual by three authors and focuses gender sensitive communication at school. It is not barrier-free. The second one deals with institutional discrimination and shows the results of conducted interviews with young adults who participated in integrations classes for refugees. The document was checked for accessibility in MS Office. All contributions are published in German.
DOI: 10.5281/zenodo.5734538
title: Diversity - eine schriftliche Diskussionsreihe von und mit Studierenden

description: Dies ist ein eigeninitiiertes Projekt von Christiane Arndt und Lehramtsstudierenden. Es entstand im Rahmen eines Einführungsseminars zu Diversity und will Studierenden ermöglichen, ihre schriftlichen Beiträge zu veröffentlichen und damit ein breiteres Publikum zu erreichen. Die daraus entstehende Reihe, die hier über Versionen kontinuierlich ergänzt werden wird, spiegelt die Vielfalt der Themen, Zugänge und Umsetzungsansätze der Studierenden wider. Die Reihe beginnt mit zwei Beiträgen. Der erste Beitrag wurde von drei Autorinnen verfasst und ist als Leitfaden angelegt, der sich geschlechtersensibler Sprache im Unterricht widmet. Dieses Dokument ist nicht barrierefrei. Der zweite Beitrag setzt sich anhand einer Interviewstudie mit institutioneller Diskriminierung von jungen Erwachsenen mit Fluchtgeschichte im Rahmen von schulischen Integrationsklassen auseinander. Das Dokument wurde in MS Office auf Barrieren geprüft. Alle Dokumente sind auf Deutsch. This is a self-initiated project by Christiane Arndt and teacher training students. It was developed in an introductory seminar on diversity and aims at enabling students to publish their written contributions and to reach a larger audience. The series of articles, which will be supplemented here, show the variety of topics, approaches and accounts of the students. The series begins with two articles. The first one was conceptually designed as a manual by three authors and focuses gender sensitive communication at school. It is not barrier-free. The second one deals with institutional discrimination and shows the results of conducted interviews with young adults who participated in integrations classes for refugees. The document was checked for accessibility in MS Office. All contributions are published in German.
DOI: 10.34740/kaggle/dsv/2892437
title: AutoXGB
DOI: 10.5281/zenodo.5543432
title: CoPro - ERL results

description: The different zipped folders contain the raw CoPro model output used for the ERL submission. SSP_RCP_run: default settings including both SSP and RCP indicators; SSP_RCP_SA_run: SSP_RCP_run in which statistical method used to sample RCP indicators is varied; SSP_run: idential settings as SSP-RCP run but without RCP indicators. You find two folders per run. '_REF' for output from the reference run, and '_PROJ' with output from the projections. The '_PROJ' folder contains three sub-folders per scenario: 'ssp1', 'ssp2', and 'ssp3'. Note that this nomenclature is identical across SSP-RCP and SSP runs. While the '_REF' folders contains various output from the evaluation of the predictions (e.g. metrics, indicator importance), the '_PROJ' folders contain only the projected conflict risk per year, that is between end of historial period and end of projection period. The annual projections can be further processed using tools from CoPro.<br>
DOI: 10.5281/zenodo.4973520
title: CoPro - ERL results

description: The different zipped folders contain the raw CoPro model output used for the ERL submission. SSP_RCP_run: default settings including both SSP and RCP indicators; SSP_RCP_SA_run: SSP_RCP_run in which statistical method used to sample RCP indicators is varied; SSP_run: idential settings as SSP-RCP run but without RCP indicators. You find two folders per run. '_REF' for output from the reference run, and '_PROJ' with output from the projections. The '_PROJ' folder contains three sub-folders per scenario: 'ssp1', 'ssp2', and 'ssp3'. Note that this nomenclature is identical across SSP-RCP and SSP runs. While the '_REF' folders contains various output from the evaluation of the predictions (e.g. metrics, indicator importance), the '_PROJ' folders contain only the projected conflict risk per year, that is between end of historial period and end of projection period. The annual projections can be further processed using tools from CoPro.<br>
DOI: 10.21227/td3p-4n51
title: Time Series Dataset For DDOS Attack Detection

description: Distributed Denial of Service (DDoS) attacks first appeared in the mid-1990s, as attacks stopping legitimate users from accessing specific services available on the Internet. A DDoS attack attempts to exhaust the resources of the victim to crash or suspend its services. Time series modeling will help system administrators for better planning of resource allocation to defend against DDoS attacks. Different Time Series analysis techniques are applied to detect the DDoS attacks.About the dataset:This time series data set is prepared by processing the pcap files present in the benchmark data set CICDDoS2019. The CICDDoS2019 dataset has numerous modern reflective DDoS attacks, such as PortMap, NetBIOS, LDAP, MSSQL, UDP, UDP-Lag, SYN, NTP, DNS, and SNMP. The training day on 12 January began at 10:30 and ended at 17:15, and the test day on 11 March started at 09:40 and ended at 17:35.We replayed the CICDDoS2019 dataset pcap files using the tool tcpreplay at different network speeds up to 20 Gbps and captured the traffic using the tool Wireshark. We captured network traffic for every time interval(5 Seconds) as a separate pcap file and processed it to produce the feature score for every time interval.This data set will help in detecting TCP-based flooding attacks, namely TCP-SYN, TCP-SYN-ACK, TCP-ACK, and TCP-RST.