cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15482/usda.adc/29927255.v1
title: Data from: The relationship between pollinator community and pollination services is mediated by floral abundance in urban landscapes

description: It is often argued that biodiversity and ecosystem functioning are linked by both habitat and species composition, and that this relationship is particularly critical for mobile ecosystem service providers. This may be especially true for pollinators, which are essential for the reproduction of the majority of flowering plant species, are highly mobile, and can exhibit dramatically different foraging behaviors across ecosystems. Understanding how habitat and community composition impact pollination is especially relevant in urban environments where pollinators can promote food security. We examined the relationships between local resource density, landscape composition, pollinator abundance and richness, and pollination services in an urban agricultural system spanning &gt;125 km of the California central coast. We used a replicated, experimental approach to evaluate the reproductive success of jalapeño peppers across urban gardens and conducted a greenhouse experiment to evaluate the benefits of insect-mediated pollination to pepper reproduction. In the greenhouse, we found that jalapeño fruit weight and seed number was significantly greater with insect-mediated pollination than without. In the field, we found that jalapeño seed number increased significantly with herbaceous (weed, crop, and ornamental) plant richness and the number of perennial trees and shrubs at the site level, but decreased with the amount of natural landscape cover. We also found that higher pollinator richness enhanced seed number in floral-dense gardens, likely due to the greater functional complementarity of a more diverse pollinator community. Furthermore, there was a positive relationship between pollinator abundance and seed number, but it weakened in gardens with more flowers, likely through lower per-plant pollinator visitation in the presence of competing floral resources.As in past studies, we found that mulch had a negative impact on pollinator abundance, highlighting that abiotic factors commonly managed by gardeners can directly impact ecosystem service providers. This study demonstrates that local conditions can significantly influence ecosystem service provision and that urban gardeners need to optimize for both pollinator richness and floral resource availability to achieve optimal pollination.
DOI: 10.6084/m9.figshare.24213195
title: GitHub Discussions as a Tool for Onboarding Newcomers in OSS

description: Replication package for paper GitHub Discussions as a Tool for Onboarding Newcomers in OSS;
DOI: 10.6084/m9.figshare.24213195.v4
title: GitHub Discussions as a Tool for Onboarding Newcomers in OSS

description: Replication package for paper GitHub Discussions as a Tool for Onboarding Newcomers in OSS;
DOI: 10.6084/m9.figshare.24213195.v3
title: Analysis of the Role of GitHub Discussions in Open Source Software Development Environment

description: Replication package for paper Analysis of the Role of GitHub Discussions in Open Source Software Development Environment;
DOI: 10.15482/usda.adc/29974024
title: Data from: Plant damage in urban agroecosystems varies with local and landscape factors

description: Biotic and abiotic factors at local to landscape scales influence insect pest and disease dynamics in agricultural systems. However, relative to studies focused on the importance of these drivers of crop plant damage in rural agricultural systems, few studies investigate plant damage from herbivore insects and plant diseases in urban agroecosystems, and consequently, most urban farmers lack knowledge on crop protection tactics. Here we use three common crop species within urban agroecosystems (community gardens) distributed across an urban landscape as a model system to ask how local, landscape, and microclimate factors relate to herbivore and disease plant damage. We hypothesized that plant damage would be lower in gardens with greater local vegetation complexity, landscape-scale complexity, and less variable temperatures, but that the importance of factors is species- and damage-specific. By measuring <i>Brassica</i>, cucurbit, and tomato insect pest and disease damage across the growing season, we confirmed that the importance of factors varies with crop species and by damage type. Both local complexity factors (e.g., number of trees and shrubs) and landscape complexity (percent natural cover in the landscape) relate to lower incidence of herbivore and disease damage on some crops, supporting our prediction that habitat heterogeneity at both local and landscape scales lowers plant damage. Greater temperature variability related to higher disease damage on tomatoes linking microclimate factors to disease prevalence. Yet, local complexity factors also related to higher incidence of plant damage for other crop species, indicating variable species-level impacts of local management factors on plant damage. By measuring the abundance of fungus-feeding lady beetles (<i>Psyllobora</i>) on cucurbits, we confirmed a strong association between natural enemies and powdery mildew. We provide a case study on how changes in local to landscape-scale factors relate to plant damage in urban agroecosystems and suggest how urban farmers and gardeners can apply this ecological knowledge to improve sustainable urban food production.
DOI: 10.15482/usda.adc/29974024.v1
title: Data from: Plant damage in urban agroecosystems varies with local and landscape factors

description: Biotic and abiotic factors at local to landscape scales influence insect pest and disease dynamics in agricultural systems. However, relative to studies focused on the importance of these drivers of crop plant damage in rural agricultural systems, few studies investigate plant damage from herbivore insects and plant diseases in urban agroecosystems, and consequently, most urban farmers lack knowledge on crop protection tactics. Here we use three common crop species within urban agroecosystems (community gardens) distributed across an urban landscape as a model system to ask how local, landscape, and microclimate factors relate to herbivore and disease plant damage. We hypothesized that plant damage would be lower in gardens with greater local vegetation complexity, landscape-scale complexity, and less variable temperatures, but that the importance of factors is species- and damage-specific. By measuring <i>Brassica</i>, cucurbit, and tomato insect pest and disease damage across the growing season, we confirmed that the importance of factors varies with crop species and by damage type. Both local complexity factors (e.g., number of trees and shrubs) and landscape complexity (percent natural cover in the landscape) relate to lower incidence of herbivore and disease damage on some crops, supporting our prediction that habitat heterogeneity at both local and landscape scales lowers plant damage. Greater temperature variability related to higher disease damage on tomatoes linking microclimate factors to disease prevalence. Yet, local complexity factors also related to higher incidence of plant damage for other crop species, indicating variable species-level impacts of local management factors on plant damage. By measuring the abundance of fungus-feeding lady beetles (<i>Psyllobora</i>) on cucurbits, we confirmed a strong association between natural enemies and powdery mildew. We provide a case study on how changes in local to landscape-scale factors relate to plant damage in urban agroecosystems and suggest how urban farmers and gardeners can apply this ecological knowledge to improve sustainable urban food production.
DOI: 10.5281/zenodo.17122816
title: European colonial empires accelerated ant invasions

description: Data and code from: Bonnamour, A. and Bertelsmeier, C. 2025. European colonial empires accelerated ant invasions. – Ecography.
DOI: 10.5281/zenodo.17122817
title: European colonial empires accelerated ant invasions

description: Data and code from: Bonnamour, A. and Bertelsmeier, C. 2025. European colonial empires accelerated ant invasions. – Ecography.
DOI: 10.5281/zenodo.15700030
title: Dynamic perception graphs from spatial behavior data in Minecraft-based city environments

description: Dynamic Perception Graphs from Spatial Behavior Data in Minecraft-Based City Environments

This dataset contains dynamic perception graphs derived from spatial behavior data of 136 participants exploring 10 city locations modeled after Daejeon, South Korea, within a Minecraft-based virtual testbed (see [1] for environment details). Participants explored the environment for approximately one hour, during which their position and orientation were recorded every second.

Perception graphs were generated following the methodology described in [2], using a visual angle of 120° and a visual range of 10 meters. These graphs were segmented into 30-second intervals to create dynamic perception graphs as described in [3]. In total, 12,911 graphs were generated.

This dataset is primarily associated with [3], which presents the detailed methodology and findings. Researchers using this dataset are encouraged to cite [3].

 



References:


[1] Chang, Mi, et al. "The influence of virtual tour on urban visitor using a network approach." Advanced Engineering Informatics 56 (2023): 102025.


[2] Lee, Gi-bbeum, et al. "Perception graph for representing visuospatial behavior in virtual environments: A case study for Daejeon City." Advanced Engineering Informatics 62 (2024): 102594.


[3] Lee, Gi-bbeum, & Lee, Ji-Hyun. "Graph approach for Gibson’s ecological optics with dynamics of network motifs". Advanced Engineering Informatics 69, (2026): 103865.
DOI: 10.5281/zenodo.15700031
title: Dynamic perception graphs from spatial behavior data in Minecraft-based city environments

description: Dynamic Perception Graphs from Spatial Behavior Data in Minecraft-Based City Environments

This dataset contains dynamic perception graphs derived from spatial behavior data of 136 participants exploring 10 city locations modeled after Daejeon, South Korea, within a Minecraft-based virtual testbed (see [1] for environment details). Participants explored the environment for approximately one hour, during which their position and orientation were recorded every second.

Perception graphs were generated following the methodology described in [2], using a visual angle of 120° and a visual range of 10 meters. These graphs were segmented into 30-second intervals to create dynamic perception graphs as described in [3]. In total, 12,911 graphs were generated.

This dataset is primarily associated with [3], which presents the detailed methodology and findings. Researchers using this dataset are encouraged to cite [3].

 



References:


[1] Chang, Mi, et al. "The influence of virtual tour on urban visitor using a network approach." Advanced Engineering Informatics 56 (2023): 102025.


[2] Lee, Gi-bbeum, et al. "Perception graph for representing visuospatial behavior in virtual environments: A case study for Daejeon City." Advanced Engineering Informatics 62 (2024): 102594.


[3] Lee, Gi-bbeum, & Lee, Ji-Hyun. "Graph approach for Gibson’s ecological optics with dynamics of network motifs". Advanced Engineering Informatics 69, (2026): 103865.
DOI: 10.25824/redu/rfvsrk
title: Replication data for development of a software platform for research and advanced simulations in photovoltaic systems

description: Contents of the data collection This work proposed a web application for irradiance models in the context of photovoltaic energy. Images To support the central topic of the proposed platform, an initial study was conducted on the relevant concepts. During this process, efforts were made to represent irradiance, its components, and solar geometry parameterization perspectives through didactic figures. This dataset contains the images used in the final dissertation text and has also been applied in presentations on the same topic. GitHub link: https://github.com/IsabelleFSNunes/ImagesProjectDissertationFEEC Additionally, it includes images related to the computational implementation phase of the web application. Code Regarding code and implementation, the GitHub link will be available with usage readmes and documentation to help understand the main components applied. https://github.com/IsabelleFSNunes/CodesProjectDissertationFEEC
DOI: 10.5281/zenodo.16883865
title: Literature Repository of studies on Machine Learning Based Sales Forecasting

description: This dataset contains bibliographic information on 116 studies dealing with machine learning approaches for sales or demand forecasting, respectively.The dataset includes authors, years, titles, and DOIs / Links. No full texts are included.
DOI: 10.5281/zenodo.17122547
title: Literature Repository of studies on Machine Learning Based Sales Forecasting

description: This dataset contains bibliographic information on 116 studies dealing with machine learning approaches for sales or demand forecasting, respectively.The dataset includes authors, years, titles, and DOIs / Links. No full texts are included.
DOI: 10.25574/cdc.465
title: Chandra X-ray Observatory Chandra Data Collection for request #465

description: Chandra Data Collection for request #465
DOI: 10.6084/m9.figshare.30128920
title: Network pharmacology analysis and experimental validation of Yinma Jiedu Granule in the treatment of acute pharyngitis

description: Yinma Jiedu Granules (YMJD) is a classical Chinese medicinal formula for alleviating inflammatory conditions, such as acute bronchitis and tracheitis. In this study, network pharmacology identified <i>AKT1</i>, <i>IL6,</i> and <i>IL1B</i> as hub genes, and molecular docking confirmed their binding to active ingredients (naringenin, quercetin, and aloe-emodin). Moreover, pathway enrichment analysis indicated YMJD alleviated acute pharyngitis by suppressing oxidative stress and PI3K-AKT signaling pathway. In acute pharyngitis rat model, YMJD improved the symptoms of acute pharyngitis. Mechanistic study showed that YMJD inhibited oxidative stress and inflammatory response through downregulation of PI3K/AKT/mTOR signaling pathway, providing evidence for YMJD to treat acute pharyngitis.
DOI: 10.6084/m9.figshare.30128920.v1
title: Network pharmacology analysis and experimental validation of Yinma Jiedu Granule in the treatment of acute pharyngitis

description: Yinma Jiedu Granules (YMJD) is a classical Chinese medicinal formula for alleviating inflammatory conditions, such as acute bronchitis and tracheitis. In this study, network pharmacology identified <i>AKT1</i>, <i>IL6,</i> and <i>IL1B</i> as hub genes, and molecular docking confirmed their binding to active ingredients (naringenin, quercetin, and aloe-emodin). Moreover, pathway enrichment analysis indicated YMJD alleviated acute pharyngitis by suppressing oxidative stress and PI3K-AKT signaling pathway. In acute pharyngitis rat model, YMJD improved the symptoms of acute pharyngitis. Mechanistic study showed that YMJD inhibited oxidative stress and inflammatory response through downregulation of PI3K/AKT/mTOR signaling pathway, providing evidence for YMJD to treat acute pharyngitis.
DOI: 10.25574/26011
title: Chandra X-ray Observatory ObsId 26011

description: High-speed ejecta from the PSR 1259-63/LS 2883 binary
DOI: 10.7910/dvn/jkadyp
title: GWAS summary statistics for fat depots

description: These summary statistics were generated each for VAT, GFAT, and ASAT, using subsets of the UK Biobank that did not include either metabolomics measurements or proteomics measurements. These summary statistics were used for MR.
DOI: 10.5281/zenodo.17122803
title: Intramuscular microelectrode arrays enable highly-accurate neural decoding of hand movements
DOI: 10.5281/zenodo.17122804
title: Intramuscular microelectrode arrays enable highly-accurate neural decoding of hand movements
DOI: 10.25824/redu/zvtucg
title: Valorization of peanut skin: source of extract with colorant and antioxidant potential for use in foods

description: My research project, developed during my master’s degree, was part of PBIS-NPOP (Problem-Oriented Research Center), which aims to develop an Integrated Biotechnological Platform of Healthy Ingredients (PBIS), dedicated to researching and obtaining healthier ingredients from national raw materials, strengthening the competitiveness of the Brazilian food industry. The research was included in the phenolics platform, focused on the use of agro-industrial residues for application as healthy ingredients. This study evaluated the technological and nutritional potential of peanut skin extract, aiming at its use as a natural colorant, aligned with the demands for sustainability and healthiness. Since it is part of a larger project, which involves partnerships with major food industries located in the State of São Paulo, it is under confidentiality. Therefore, I cannot attach the processed raw data tables, but only provide the metadata.
DOI: 10.34740/kaggle/dsv/13068857
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.14826942
title: GWAS summary statistics for brain age gap

description: This Zenodo repository contains genome-wide association study (GWAS) summary statistics and polygenic score (PGS) weights from our study "Genome-wide analysis of brain age identifies 59 associated loci and unveils relationships with mental and physical health". This work builds upon our previous medRxiv preprint and accompanies our Nature Aging article. Our analysis code is provided on GitHub. The individual-level data used in this study were obtained from the UK Biobank (imaging release v1.10) and LIFE-adult cohort study.

GWAS summary statistics

We provide GWAS summary statistics for brain age gap, an MRI-based marker quantifying deviations between biological and chronological age. Analyses were conducted for grey matter (gm), white matter (wm), and combined grey and white matter (gwm) brain age gap. The resulting summary statistics include:



brainage2025.discov.{gm,wm,gwm}.gz – discovery sample (n = 32,634; white-British ancestry)

brainage2025.replic.eur.{gm,wm,gwm}.gz – replication sample (n = 22,256; European ancestry)

brainage2025.replic.multi.{gm,wm,gwm}.gz – replication sample (n = 23,714; multi-ancestry)

brainage2025.full.eur.{gm,wm,gwm}.gz – discovery + replication sample (n = 54,890; European ancestry)

brainage2025.full.multi.{gm,wm,gwm}.gz – discovery + replication sample (n = 56,348; multi-ancestry)


The GWAS results are provided as gzip-compressed files in tab- and space-delimited format. Detailed column descriptions can be found in the accompanying README.txt file.

PGS weights

For polygenic score (PGS) calculations, we provide brainage2025.pgsweights.{gm,wm,gwm}.gz, which contain weights derived from applying SBayesRC to the combined European ancestry discovery and replication GWAS summary statistics (n = 54,890). PGS were found to explain 7-10% of the phenotypic variance in brain age gap among European ancestry individuals. Weights in column 'A1Effect' reflect joint variant effects and can be used directly for PGS calculation via 'plink2 --score', without requiring P-value thresholding or clumping.

Funding Statement

UK Biobank was established by the Wellcome Trust medical charity, Medical Research Council, Department of Health, Scottish Government and the Northwest Regional Development Agency. UK Biobank also received funding from the Welsh Government, British Heart Foundation, Cancer Research UK and Diabetes UK. This publication was supported by LIFE - Leipzig Research Centre for Civilization Diseases, University of Leipzig. LIFE was funded by means of the European Social Fund and the Free State of Saxony.
DOI: 10.5281/zenodo.14826943
title: GWAS summary statistics for brain age gap

description: This Zenodo repository contains genome-wide association study (GWAS) summary statistics and polygenic score (PGS) weights from our study "Genome-wide analysis of brain age identifies 59 associated loci and unveils relationships with mental and physical health". This work builds upon our previous medRxiv preprint and accompanies our Nature Aging article. Our analysis code is provided on GitHub. The individual-level data used in this study were obtained from the UK Biobank (imaging release v1.10) and LIFE-adult cohort study.

GWAS summary statistics

We provide GWAS summary statistics for brain age gap, an MRI-based marker quantifying deviations between biological and chronological age. Analyses were conducted for grey matter (gm), white matter (wm), and combined grey and white matter (gwm) brain age gap. The resulting summary statistics include:



brainage2025.discov.{gm,wm,gwm}.gz – discovery sample (n = 32,634; white-British ancestry)

brainage2025.replic.eur.{gm,wm,gwm}.gz – replication sample (n = 22,256; European ancestry)

brainage2025.replic.multi.{gm,wm,gwm}.gz – replication sample (n = 23,714; multi-ancestry)

brainage2025.full.eur.{gm,wm,gwm}.gz – discovery + replication sample (n = 54,890; European ancestry)

brainage2025.full.multi.{gm,wm,gwm}.gz – discovery + replication sample (n = 56,348; multi-ancestry)


The GWAS results are provided as gzip-compressed files in tab- and space-delimited format. Detailed column descriptions can be found in the accompanying README.txt file.

PGS weights

For polygenic score (PGS) calculations, we provide brainage2025.pgsweights.{gm,wm,gwm}.gz, which contain weights derived from applying SBayesRC to the combined European ancestry discovery and replication GWAS summary statistics (n = 54,890). PGS were found to explain 7-10% of the phenotypic variance in brain age gap among European ancestry individuals. Weights in column 'A1Effect' reflect joint variant effects and can be used directly for PGS calculation via 'plink2 --score', without requiring P-value thresholding or clumping.

Funding Statement

UK Biobank was established by the Wellcome Trust medical charity, Medical Research Council, Department of Health, Scottish Government and the Northwest Regional Development Agency. UK Biobank also received funding from the Welsh Government, British Heart Foundation, Cancer Research UK and Diabetes UK. This publication was supported by LIFE - Leipzig Research Centre for Civilization Diseases, University of Leipzig. LIFE was funded by means of the European Social Fund and the Free State of Saxony.
DOI: 10.25345/c52j68h7b
title: MassIVE MSV000099173 - NCOMMS-25-68360 Nanobody discover for superantigens
title: Raw mass spec files for discovery of superantigen specific nanobodies from immunized llama's serum
DOI: 10.25574/00122
title: Chandra X-ray Observatory ObsId 00122

description: MONITORING OF SN 1987A
DOI: 10.25574/00124
title: Chandra X-ray Observatory ObsId 00124

description: HIGH RESOLUTION SPECTROSCOPY OF SN 1987A
DOI: 10.25574/01387
title: Chandra X-ray Observatory ObsId 01387

description: HIGH RESOLUTION SPECTROSCOPY OF SN 1987A
DOI: 10.5281/zenodo.15411011
title: Dataset from: Multi-messenger observations in the Einstein Telescope era

description: The binary neutron star and black hole - neutron star populations data from the paper "Multi-messenger observations in the Einstein Telescope era: binary neutron star and black hole - neutron star mergers" (https://arxiv.org/abs/2503.00116).

Details of how to use the data, as well as the scripts to reproduce the main figures of the paper are given in the accompanying Github repository https://ghttps://github.com/acolombo140/ET_MM/

The file "ET_COMPASCompactOutput_BHNS_A" is based on Broekgaarden et al. 2021 (https://arxiv.org/abs/2103.02608). Variations on the population are available through the link https: //doi.org/10.5281/zenodo.4574727.









If you use this data, please cite the above manuscript.