cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6600659.v1
title: Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

description: Table S8. Information of 332 good SSR primers, including information of the primer sequences, annealing temperature (Tm), repeat motifs, target size. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.14464977
title: Output files(part20)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.14464977.v1
title: Output files(part20)

description: The output files of MIP3D.
DOI: 10.6084/m9.figshare.12367838
title: Additional file 2 of Microenvironment characterization and multi-omics signatures related to prognosis and immunotherapy response of hepatocellular carcinoma

description: Additional file 2. Additional tables.
DOI: 10.6084/m9.figshare.12367838.v1
title: Additional file 2 of Microenvironment characterization and multi-omics signatures related to prognosis and immunotherapy response of hepatocellular carcinoma

description: Additional file 2. Additional tables.
DOI: 10.6084/m9.figshare.12367904
title: Additional file 1 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 1: Table S1 (Sheet 1): Information of genes clustered in M1. Table S2 (Sheet 2): Information of genes clustered in M2. Table S3 (Sheet 3): Information of genes clustered in M3. Table S4 (Sheet 4): Information of genes clustered in M4. Table S5 (Sheet 5): Information of genes clustered in M5. Table S6 (Sheet 6): Information of genes clustered in M6. Table S7 (Sheet 7): Information of genes clustered in M7. Table S8 (Sheet 8): Information of genes clustered in M8. Table S9 (Sheet 9): Information of genes clustered in M9. The tables showed the Ensembl ID, name, location and description of the genes.
DOI: 10.6084/m9.figshare.12367904.v1
title: Additional file 1 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 1: Table S1 (Sheet 1): Information of genes clustered in M1. Table S2 (Sheet 2): Information of genes clustered in M2. Table S3 (Sheet 3): Information of genes clustered in M3. Table S4 (Sheet 4): Information of genes clustered in M4. Table S5 (Sheet 5): Information of genes clustered in M5. Table S6 (Sheet 6): Information of genes clustered in M6. Table S7 (Sheet 7): Information of genes clustered in M7. Table S8 (Sheet 8): Information of genes clustered in M8. Table S9 (Sheet 9): Information of genes clustered in M9. The tables showed the Ensembl ID, name, location and description of the genes.
DOI: 10.6084/m9.figshare.12367907
title: Additional file 2 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 2: Table S10 (Sheet 1): GO enrichment result of genes clustered in M1. Table S11 (Sheet 2): GO enrichment result of genes clustered in M2. Table S12 (Sheet 3): GO enrichment result of genes clustered in M4. Table S13 (Sheet 4): GO enrichment result of genes clustered in M6. Table S14 (Sheet 5): GO enrichment result of genes clustered in M7. Table S15 (Sheet 6): GO enrichment result of genes clustered in M8.
DOI: 10.17630/a7067987-5a76-4a70-83c1-f49ed9506d31
title: Enhancing Photocatalytic Performance of Atom Transfer Radical Addition (ATRA) Reactions in Water Using Immobilized 10-Phenylphenothiazine Catalysts on Mesoporous Silica Supports (dataset)
DOI: 10.6084/m9.figshare.12367907.v1
title: Additional file 2 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 2: Table S10 (Sheet 1): GO enrichment result of genes clustered in M1. Table S11 (Sheet 2): GO enrichment result of genes clustered in M2. Table S12 (Sheet 3): GO enrichment result of genes clustered in M4. Table S13 (Sheet 4): GO enrichment result of genes clustered in M6. Table S14 (Sheet 5): GO enrichment result of genes clustered in M7. Table S15 (Sheet 6): GO enrichment result of genes clustered in M8.
DOI: 10.6084/m9.figshare.9746492
title: Supraglacial rivers and lakes on the southwest Greenland Ice Sheet

description: The data are GIS shapefiles of supraglacial rivers and lakes on the southwest Greenland Ice Sheet mapped using seven Landsat-8 satellite imagery acquired between July 13 and August 2, 2015.
DOI: 10.6084/m9.figshare.12367940
title: Additional file 6 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 6: Table S16. The list of genes distributed into each of the four temporal patterns.
DOI: 10.6084/m9.figshare.12367940.v1
title: Additional file 6 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 6: Table S16. The list of genes distributed into each of the four temporal patterns.
DOI: 10.6084/m9.figshare.12367949
title: Additional file 7 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 7: Table S17 (Sheet 1): Functional enrichment result of genes in pattern A. Table S18 (Sheet 2): Functional enrichment result of genes in pattern B. Table S19 (Sheet 3): Functional enrichment result of genes in pattern D.
DOI: 10.6084/m9.figshare.12367949.v1
title: Additional file 7 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 7: Table S17 (Sheet 1): Functional enrichment result of genes in pattern A. Table S18 (Sheet 2): Functional enrichment result of genes in pattern B. Table S19 (Sheet 3): Functional enrichment result of genes in pattern D.
DOI: 10.6084/m9.figshare.12367958
title: Additional file 8 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 8: Table S20. Information of experimental animals and transcriptome assembly details.
DOI: 10.6084/m9.figshare.12367958.v1
title: Additional file 8 of Multipathway synergy promotes testicular transition from growth to spermatogenesis in early-puberty goats

description: Additional file 8: Table S20. Information of experimental animals and transcriptome assembly details.
DOI: 10.6084/m9.figshare.24426626
title: Tumor-derived CircRNA_102191 promotes gastric cancer and facilitates M2 macrophage polarization

description: Background: Gastric cancer is a common malignant tumor of the digestive tract and the fourth leading cause of death from cancer-related diseases. In recent years, many studies have found that circular RNAs play an important role in cancer. Tumor-associated macrophages (TAMs) are also critical for tumor progression. Objective: This study examined the role of circRNA_102191 in gastric cancer progression. Methods: The relative mRNA levels were determined by qRT-PCR. Western blotting and ELISA were used to detect the protein levels. In vitro proliferation was assessed using CCK8 and clonogenic assays. The migration and invasion of cell lines were assessed by transwell-based assays. The interactions between molecules were detected using a luciferase reporter assay. M0 macrophages were induced with PMA. M1 macrophages were induced with LPS and IFN-γ, and M2 macrophages were induced with IL-4. Results: The expression of circRNA_102191 was enhanced significantly in gastric cancer cell lines and clinical tumor tissues. CircRNA_102191 promotes gastric cancer cell progression by regulating miR-493-3p and its downstream target gene XPR1. CircRNA_102191 can enhance the EMT process of gastric cancer cells by promoting the M2 polarization of macrophages. Conclusion: CircRNA_102191 promotes the biological function of gastric cancer cells by regulating the miR-493-3p/XPR1 axis and M2 macrophage polarization.
DOI: 10.6084/m9.figshare.24426626.v1
title: Tumor-derived CircRNA_102191 promotes gastric cancer and facilitates M2 macrophage polarization

description: Background: Gastric cancer is a common malignant tumor of the digestive tract and the fourth leading cause of death from cancer-related diseases. In recent years, many studies have found that circular RNAs play an important role in cancer. Tumor-associated macrophages (TAMs) are also critical for tumor progression. Objective: This study examined the role of circRNA_102191 in gastric cancer progression. Methods: The relative mRNA levels were determined by qRT-PCR. Western blotting and ELISA were used to detect the protein levels. In vitro proliferation was assessed using CCK8 and clonogenic assays. The migration and invasion of cell lines were assessed by transwell-based assays. The interactions between molecules were detected using a luciferase reporter assay. M0 macrophages were induced with PMA. M1 macrophages were induced with LPS and IFN-γ, and M2 macrophages were induced with IL-4. Results: The expression of circRNA_102191 was enhanced significantly in gastric cancer cell lines and clinical tumor tissues. CircRNA_102191 promotes gastric cancer cell progression by regulating miR-493-3p and its downstream target gene XPR1. CircRNA_102191 can enhance the EMT process of gastric cancer cells by promoting the M2 polarization of macrophages. Conclusion: CircRNA_102191 promotes the biological function of gastric cancer cells by regulating the miR-493-3p/XPR1 axis and M2 macrophage polarization.
DOI: 10.6084/m9.figshare.10270907
title: MOESM1 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 1: Table S1. Genes associated with Usher syndrome and RP.
DOI: 10.6084/m9.figshare.10270907.v1
title: MOESM1 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 1: Table S1. Genes associated with Usher syndrome and RP.
DOI: 10.6084/m9.figshare.10270925
title: MOESM3 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 3: Table S2. Statistic of target sequencing for genetic analysis.
DOI: 10.6084/m9.figshare.10270925.v1
title: MOESM3 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 3: Table S2. Statistic of target sequencing for genetic analysis.
DOI: 10.6084/m9.figshare.10270931
title: MOESM4 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 4: Table S3. Descriptions of evidence of pathology for identified variants.
DOI: 10.6084/m9.figshare.10270931.v1
title: MOESM4 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 4: Table S3. Descriptions of evidence of pathology for identified variants.
DOI: 10.6084/m9.figshare.10270937
title: MOESM5 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 5: Table S4. Statistic of target sequencing for PGT.
DOI: 10.6084/m9.figshare.10270937.v1
title: MOESM5 of Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

description: Additional file 5: Table S4. Statistic of target sequencing for PGT.
DOI: 10.6084/m9.figshare.10270967
title: MOESM1 of Molecular characterization of carbapenem-resistant Klebsiella pneumoniae isolates with focus on antimicrobial resistance

description: Additional file 1: Figure S1. Circle diagram of K. pneumoniae genome sequenced via Oxford Nanopore sequencing technology. Figure S2. Distribution of protein-coding genes predicted in 1567D strain. Figure S3. COG classification 1567D stain for the carbapenem-resistant K. pneumoniae. Figure S4. Distribution of K. pneumoniae genes annotated in GO term. Figure S5. Annotation of KEGG pathways in the carbapenem-resistant K. pneumoniae. Figure S6. Phylogenetic tree assessing the relatedness of the carbapenem-resistant K. pneumoniae strains in Fuzhou (purple) and in Hangzhou (green) to the reference genome database (blue). Table S1. Information of strains and patient diagnosis. Table S2. Phenotypes of 1566D, a.k.a., medical records of 1566P. Table S3. Phenotypes of 1567D, a.k.a., medical records of 1567P. Table S4. Phenotypes of 2035D, a.k.a., medical records of 2035P. Table S5. Phenotypes of 2036D, a.k.a., medical records of 2036P. Table S6. Phenotypes of 2037D, a.k.a., medical records of 2037P. Table S7. Phenotypes of 2038D, a.k.a., medical records of 2038P. Table S8. Phenotypes of 2039D, a.k.a., medical records of 2039P. Table S9. Illumina MiSeq sequencing yields. Table S10. Oxford Nanopore sequencing yields. Table S11. Detection and validation of SNPs in seven strains. Table S12. A total of 92 all-variation SNPs in seven strains. Red refers to 40 all-variation loci; Bold stands for 24 strainâ€™s unique SNP loci.
DOI: 10.6084/m9.figshare.6600947
title: Additional file 10: of Effects of vitro sucrose on quality components of tea plants (Camellia sinensis) based on transcriptomic and metabolic analysis

description: Table S6. All expression data of contigs in Fig. 7. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.10270967.v1
title: MOESM1 of Molecular characterization of carbapenem-resistant Klebsiella pneumoniae isolates with focus on antimicrobial resistance

description: Additional file 1: Figure S1. Circle diagram of K. pneumoniae genome sequenced via Oxford Nanopore sequencing technology. Figure S2. Distribution of protein-coding genes predicted in 1567D strain. Figure S3. COG classification 1567D stain for the carbapenem-resistant K. pneumoniae. Figure S4. Distribution of K. pneumoniae genes annotated in GO term. Figure S5. Annotation of KEGG pathways in the carbapenem-resistant K. pneumoniae. Figure S6. Phylogenetic tree assessing the relatedness of the carbapenem-resistant K. pneumoniae strains in Fuzhou (purple) and in Hangzhou (green) to the reference genome database (blue). Table S1. Information of strains and patient diagnosis. Table S2. Phenotypes of 1566D, a.k.a., medical records of 1566P. Table S3. Phenotypes of 1567D, a.k.a., medical records of 1567P. Table S4. Phenotypes of 2035D, a.k.a., medical records of 2035P. Table S5. Phenotypes of 2036D, a.k.a., medical records of 2036P. Table S6. Phenotypes of 2037D, a.k.a., medical records of 2037P. Table S7. Phenotypes of 2038D, a.k.a., medical records of 2038P. Table S8. Phenotypes of 2039D, a.k.a., medical records of 2039P. Table S9. Illumina MiSeq sequencing yields. Table S10. Oxford Nanopore sequencing yields. Table S11. Detection and validation of SNPs in seven strains. Table S12. A total of 92 all-variation SNPs in seven strains. Red refers to 40 all-variation loci; Bold stands for 24 strainâ€™s unique SNP loci.
DOI: 10.6084/m9.figshare.6600947.v1
title: Additional file 10: of Effects of vitro sucrose on quality components of tea plants (Camellia sinensis) based on transcriptomic and metabolic analysis

description: Table S6. All expression data of contigs in Fig. 7. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6600980
title: Additional file 1: of Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton

description: Tables S1 to S9, S11 to S13 and Figures S1 to S10. Table S10: The protein-protein interaction (PPI) types between each cytoskeleton protein and its associated upstream and downstream proteins in KEGG pathway. (ZIP 2429 kb)
DOI: 10.6084/m9.figshare.6600980.v1
title: Additional file 1: of Subcellular stoichiogenomics reveal cell evolution and electrostatic interaction mechanisms in cytoskeleton

description: Tables S1 to S9, S11 to S13 and Figures S1 to S10. Table S10: The protein-protein interaction (PPI) types between each cytoskeleton protein and its associated upstream and downstream proteins in KEGG pathway. (ZIP 2429 kb)
DOI: 10.6084/m9.figshare.10271003
title: MOESM1 of Downregulation of MYO1C mediated by cepharanthine inhibits autophagosome-lysosome fusion through blockade of the F-actin network

description: Additional file 1: Table S1. (XLSX 130 kb)
DOI: 10.6084/m9.figshare.10271003.v1
title: MOESM1 of Downregulation of MYO1C mediated by cepharanthine inhibits autophagosome-lysosome fusion through blockade of the F-actin network

description: Additional file 1: Table S1. (XLSX 130 kb)
DOI: 10.6084/m9.figshare.24426808
title: Visualization

description: Examples of dynamic behavior between DRP1 and mitochondria and endoplasmic reticulum.
DOI: 10.6084/m9.figshare.6601028
title: Additional file 13: of Effects of vitro sucrose on quality components of tea plants (Camellia sinensis) based on transcriptomic and metabolic analysis

description: Txt S1. Protein sequences used in figure 7. (TXT 117 kb)
DOI: 10.6084/m9.figshare.6601028.v1
title: Additional file 13: of Effects of vitro sucrose on quality components of tea plants (Camellia sinensis) based on transcriptomic and metabolic analysis

description: Txt S1. Protein sequences used in figure 7. (TXT 117 kb)
DOI: 10.6084/m9.figshare.12368192
title: Additional file 1 of Early-stage clinical outcomes and rotational stability of TECNIS toric intraocular lens implantation in cataract cases with long axial length

description: Additional file 1. Data for statistic analysis.
DOI: 10.6084/m9.figshare.12368192.v1
title: Additional file 1 of Early-stage clinical outcomes and rotational stability of TECNIS toric intraocular lens implantation in cataract cases with long axial length

description: Additional file 1. Data for statistic analysis.
DOI: 10.6084/m9.figshare.17086922
title: Additional file 2 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 1.
DOI: 10.6084/m9.figshare.17086922.v1
title: Additional file 2 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 1.
DOI: 10.6084/m9.figshare.17086925
title: Additional file 3 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 2.
DOI: 10.6084/m9.figshare.17086925.v1
title: Additional file 3 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 2.
DOI: 10.6084/m9.figshare.5552590
title: Facilitating the Calculation of the Efficient Score Using Symbolic Computing

description: The score statistic continues to be a fundamental tool for statistical inference. In the analysis of data from high-throughput genomic assays, inference on the basis of the score usually enjoys greater stability, considerably higher computational efficiency, and lends itself more readily to the use of resampling methods than the asymptotically equivalent Wald or likelihood ratio tests. The score function often depends on a set of unknown nuisance parameters which have to be replaced by estimators, but can be improved by calculating the efficient score, which accounts for the variability induced by estimating these parameters. Manual derivation of the efficient score is tedious and error-prone, so we illustrate using computer algebra to facilitate this derivation. We demonstrate this process within the context of a standard example from genetic association analyses, though the techniques shown here could be applied to any derivation, and have a place in the toolbox of any modern statistician. We further show how the resulting symbolic expressions can be readily ported to compiled languages, to develop fast numerical algorithms for high-throughput genomic analysis. We conclude by considering extensions of this approach. The code featured in this report is available online as part of the supplementary material.
DOI: 10.6084/m9.figshare.17086928
title: Additional file 4 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 3.
DOI: 10.6084/m9.figshare.5552590.v1
title: Facilitating the Calculation of the Efficient Score Using Symbolic Computing

description: The score statistic continues to be a fundamental tool for statistical inference. In the analysis of data from high-throughput genomic assays, inference on the basis of the score usually enjoys greater stability, considerably higher computational efficiency, and lends itself more readily to the use of resampling methods than the asymptotically equivalent Wald or likelihood ratio tests. The score function often depends on a set of unknown nuisance parameters which have to be replaced by estimators, but can be improved by calculating the efficient score, which accounts for the variability induced by estimating these parameters. Manual derivation of the efficient score is tedious and error-prone, so we illustrate using computer algebra to facilitate this derivation. We demonstrate this process within the context of a standard example from genetic association analyses, though the techniques shown here could be applied to any derivation, and have a place in the toolbox of any modern statistician. We further show how the resulting symbolic expressions can be readily ported to compiled languages, to develop fast numerical algorithms for high-throughput genomic analysis. We conclude by considering extensions of this approach. The code featured in this report is available online as part of the supplementary material.
DOI: 10.6084/m9.figshare.17086928.v1
title: Additional file 4 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 3.
DOI: 10.6084/m9.figshare.17086931
title: Additional file 5 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 4.
DOI: 10.6084/m9.figshare.17086931.v1
title: Additional file 5 of Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

description: Additional file 4.
DOI: 10.6084/m9.figshare.17086934
title: Additional file 1 of Identification of Heterotic Loci with Desirable Allelic Interaction to Increase Yield in Rice

description: Additional file 1 Table S1. Phenotypic performances of 12 traits among the parents, CSSLs, BC, and TC across two environments. Table S2. QTLs were detected for 12 traits in CSSLs across two-year trials. Table S3. Mid-parent heterotic loci (HLMP) were detected for 12 traits in BC across two environments. Table S4. Over-standard heterotic loci (HLOS) were detected for 12 traits in TC population across two environments. Table S5. The degree of dominance and mid-parent heterosis for spikelet number and grain yield in transgenic hybrids. Table S6 The degree of dominance and mid-parent heterosis for spikelet number and grain yield in 10 allelic combinations.