cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/lmuvzz
title: Supplementary Tables S3.1, S3.2 and S3.5

description: Supplementary Tables S3.1, S3.2 and S3.5 related to Chapter 3. Full descriptions of the tables are provided here: https://doi-org.uml.idm.oclc.org/10.1038/s41598-022-05028-x
DOI: 10.5683/sp3/q6jgtf
title: Supplementary Table S4.1, S4.2, S4.3, S4.8, S4.9, and S4.10

description: Supplementary Table S4.1, S4.2, S4.3, S4.8, S4.9, and S4.10 related to chapter 4. Full descriptions of the tables are provided here:
DOI: 10.5683/sp3/yo5zlt
title: Replication data for : Matching the elemental fingerprints of fish otoliths with water masses of the St. Lawrence River and its tributaries, Canada

description: This dataset contain the raw data used in the realization of the analysis linked to the following article: 

Mr. William Fortin, Prof. Olivier Morissette, Dr. Serge Lavoie, Dr. Marc Mingelbier, and Dr. Pascal Sirois. Matching the elemental fingerprints of fish otoliths with water masses of the St. Lawrence River and its tributaries, Canada. Canadian Journal of Fisheries and Aquatic Sciences. https://doi.org/10.1139/cjfas-2023-0097
DOI: 10.5683/sp3/uuei2k
title: Replication Data and Code for: Observational Learning and Firm Dynamics

description: The data and programs replicate tables and figures from "Observational Learning and Firm Dynamics", by Mahone and Rebessi. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/03lbte
title: Genetic architecture of disease resistance and tolerance in Douglas-fir trees

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p class="MsoNormal"&gt;&lt;span lang="EN-CA"&gt;Understanding the genetic architecture of tolerance and resistance to pathogens is important to monitor and maintain resilient tree populations. Here we investigate the genetic basis of tolerance and resistance to needle cast disease in Douglas-fir (&lt;em&gt;Pseudotsuga menziesii&lt;/em&gt;) caused by two fungal pathogens: Swiss needle cast (SNC) caused by &lt;em&gt;Nothophaeocryptopus gaeumannii&lt;/em&gt;, and Rhabdocline needle cast (RNC) caused by &lt;em&gt;Rhabdocline pseudotsugae&lt;/em&gt;). We performed a case-control genome-wide association analysis (GWA) and found these traits to be polygenic and under selection.&lt;/span&gt; &lt;span lang="EN-CA"&gt;We showed that stomatal regulation as well as ethylene and jasmonic acid pathways are important for resisting SNC infection and secondary metabolite pathways play a role in tolerating SNC once the plant is infected. We identified a key upstream transcription factor of plant defence, ERF1, as the main candidate for RNC resistance. Our findings contribute to the understanding of the highly polygenic architectures underlying disease resistance and tolerance in Douglas-fir and have important implications for forestry and conservation as the climate changes.&lt;/span&gt;&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;We used a pool-sequencing approach that targeted exon regions. For probe design details, see Lind et al. (2022). Briefly, the sequence capture probes were designed using genes identified in Douglas-fir RNA-seq data from (1) daily and cyclic-induced experiments (Cronn et al., 2017) and (2) needle samples infected by the fungal pathogen causing SNC &lt;em&gt;Nothophaeocryptopus gaeumannii &lt;/em&gt;and wasp (unpublished). Exon sequences with a length of at least 100bp were submitted to Roche NimbleGen for Custom SeqCap EZ probe design. &lt;/p&gt;
&lt;p&gt;DNA was extracted from Douglas-fir diploid needle tissue. DNA samples were normalised at 10ng/μl and 10 to 20 individuals were pooled per site (See File S2) by combining equimolar amounts of individual DNA samples prior to library preparation. Barcoded (Kapa, Dual-Indexed Adapter Kit) libraries were made using 100-150ng of DNA from each pooled DNA sample with an approximately 450-bp mean insert size. SeqCap library preparation was performed using custom Nimblegen SeqCap probes according to the NimbleGen SeqCap EZ HyperCap Workflow User’s Guide Ver 2 (Roche Sequencing Solutions, Inc., CA USA). Following capture, each library was sequenced in a 150bp paired-end format on an Illumina NovaSeq 6000 instrument at the Genome Quebec Innovation Centre (McGill University, Montreal, Canada).&lt;/p&gt;
description: <b>Dryad version number:</b> 8
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.jdfn2z3dp
<b>Storage size:</b> 1141499642
<b>Visibility:</b> public
DOI: 10.5683/sp3/cewag6
title: Hourly precipitation phase and 2-m surface air temperature output from the Sixth-Generation Canadian Regional Climate Model (CRCM6-GEM5)

description: &lt;p&gt;This dataset contains simulation outputs for climate variables relevant to the Forêt Montmorency, Quebec, Canada, and nearby sounding stations, Sept-Îles (YZV) and Maniwaki (WMW), over multiple resolutions and time periods. It includes data for various atmospheric and surface variables relevant to understanding precipitation types, temperature, and other meteorological characteristics. The dataset is organized into three main components: Event Analysis, Sounding Analysis, and Spatial Data.&lt;/p&gt;
&lt;p&gt; It contains the raw simulation data from the Canadian Regional Climate Model (CRCM6) at 0.11° and 0.0225° grid spacing for the analysis contained in the article.&lt;/p&gt; 
&lt;p&gt;All the data are between 2020-10 to 2021-05 and 2021-10 to 2022-05.&lt;/p&gt;
description: &lt;p&gt;Ce jeu de données contient des sorties de simulation pour des variables climatiques pertinentes pour la Forêt Montmorency, Québec, Canada, et les stations de sondage voisines, Sept-Îles (YZV) et Maniwaki (WMW), sur de multiples résolutions et périodes de temps. Il comprend des données pour diverses variables atmosphériques et de surface pertinentes pour comprendre les types de précipitations, la température et d'autres caractéristiques météorologiques : L'ensemble des données est organisé en trois composantes principales : Analyse des événements, Analyse des sondages et Données spatiales.&lt;/p&gt;
 &lt;p&gt;Il contient les données de simulation brutes du modèle régional canadien du climat (MRCC6) à un espacement de grille de 0,11° et 0,0225° pour l'analyse contenue dans l'article.&lt;/p&gt; &lt;p&gt; 
&lt;/p&gt; &lt;p&gt;Toutes les données se situent entre 2020-10 à 2021-05 et 2021-10 à 2022-05.&lt;/p&gt;
DOI: 10.5683/sp3/aqhxvg
title: Data for the paper entitled "Natural organic matter (NOM) can increase the uptake fluxes of three critical metals (Ga, La, Pt) in a unicellular green alga"

description: This dataset includes the measured variables at different sampling times for the short-term exposures of the green alga C. reinhardtii to Ga, La and Pt.
DOI: 10.5683/sp3/krhauz
title: Replication Data for: Processing tomato breeding 2021 to 2023

description: Field observations of traits on processing tomato selections made in 2021, 2022 and 2023. There are numeric data on days from transplanting to 80 percent red ripe and weeks fruit quality held after reaching 80 percent red ripe. There are text-based data recording the breeder's ratings for important selection criteria and candid comments on strengths and weaknesses of the selections.
description: Refer to the file: Tom_Br_2021_to_2023_readme.txt for explanations on the content of the files and interpretation of the terms used and ratings recorded.
This project was funded by the Ontario Tomato Research Institute (University of Guelph trust fund/project 055014).
DOI: 10.5683/sp3/kgc5j3
title: Replication Data for Satisfaction and Frustration of Basic Psychological Needs in Classroom Assessment: A Bifactor Exploratory Structural Equation Modelling Validation Study

description: Three documents archived: data, codebook, syntax. 
Ethics Number Pro00137385
Project Description: When students think generally about their need satisfaction/frustration in school writ large, they are summing across discrete activities. At school, assessment is a discrete activity where needs are likely differently satisfied than through instruction - which is where most of the literature exists. To focus on specifically increasing need satisfaction and decreasing frustration in the domain of assessment, a domain specific measurement tool is required. The purpose of this quantitative correlational study was to conduct a validation study on a new measure of Basic Psychological Need Satisfaction and Frustration in the domain of classroom assessment (BPNSF-CA).
DOI: 10.5683/sp3/etkiwr
title: Effects of pretreating wheat middlings and sunflower meal with fiber degrading enzymes on components solubilization and utilization in broiler chickens

description: The dataset is for an experiment that evaluated the effects of pretreating wheat middlings and sunflower meal with fiber degrading enzymes on components solubilization and utilization in broiler chickens.
DOI: 10.5683/sp3/ckbxsr
title: Comparative growth performance, gizzard weight, ceca digesta short chain fatty acids and nutrient utilization in broiler chickens and turkey poults in response to cereal grain type, fiber level, and multienzyme supplement fed from hatch to 28 days of life

description: The dataset is for an experiment that evaluated the Comparative growth performance, gizzard weight, ceca digesta short chain fatty acids and nutrient utilization in broiler chickens and turkey poults in response to cereal grain type, fiber level, and multienzyme supplement fed from hatch to 28 days of life.
DOI: 10.5683/sp3/jnpwj5
title: Menstrual and oral contraceptive pill cycles minimally influence vascular function and associated cellular regulation in premenopausal females.

description: Supplemental Figures 1-4 from manuscript
DOI: 10.5683/sp3/l70ojy
title: Data for “Aligning urban forest management actions with urban sustainability goals: A multi-city expert elicitation”

description: Data for “Aligning urban forest management actions with urban sustainability goals: A multi-city expert elicitation” by Bassett et al.

Article abstract: 
City leaders are setting ambitious plans to achieve critical urban sustainability goals such as reducing urban heat, mitigate flooding during storms, and conserving biodiversity, and increasingly rely on urban forests as a key nature-based solution to such challenges. Current paradigms of urban forest management typically prioritize goals like increasing tree canopy cover that are often viewed as proxies for increased ecosystem service provision, in a general sense. However, urban foresters, the professionals with responsibility to manage urban forests, are increasingly faced with the complex challenge of managing for new goals related to ecosystem services, biodiversity, or people-nature relationships, as cities increasingly set goals centered on such outcomes, without robust guidelines to follow. We ask: How can urban foresters align their street tree management actions with specific urban sustainability goals? We conducted a structured expert elicitation of urban forest professionals in three cities: Vancouver, British Columbia, Canada; Honolulu, Hawaiʻi, US; and Washington, DC, US. Participants assessed the impacts of forty direct management actions on five goals (1) canopy cover increase and tree risk reduction, (2) urban heat reduction, (3) people-nature relationships, (4) wildlife habitat, and (5) stormwater interception and infiltration. While certain actions (e.g., in the mature tree maintenance phase) were selected as needed to advance every goal, experts identified numerous actions which aligned with one or several goals, but not all. Pre-planting actions, specifically site selection and species selection, presented the greatest opportunities to advance specific goals, suggesting that aligning this phase with city sustainability goals is critical. Participants were highly confident in being able to advance all goals through street tree management and were more confident in being able to advance the goals of increasing canopy cover while reducing tree risk and of mitigating urban heat, possibly because these goals more closely align with traditional canopy cover goal setting. This research underscores the necessity of considering site-level actions to advance strategic sustainability goals, while also revealing the complexity of the task that professionals are charged with in making site-level decisions. Our findings further motivate the need for further research and tools to help support professionals in their decision-making.
description: This data is associated with a manuscript being submitted for peer review. Upon publication, a citation will be added.

This study was part of Street Tree Futures, a research project funded in part by a Partnership Development Grant from the Social Sciences and Humanities Research Council of Canada. Principal Investigator: Dr. Susan D. Day. Co-PI: Dr. Cecil C. Konijnendijk.
DOI: 10.5683/sp3/msxet0
title: IJC Microplastics Work Group 2024

description: This is the database used to create the report from an IJC work group on Microplastics.
DOI: 10.5683/sp3/rvu5mv
title: Data for "The effect of calcium on acute chloride toxicity in Daphnia species"

description: To assess how water hardness (as calcium) influences the toxicity of chloride (as NaCl) to Daphnia app., we conducted 48-hour acute chloride (as NaCl) toxicity tests on &lt; 24-hour old Daphnia neonates in six calcium treatments: 1.5, 3, 15, 40, 70, and 128 mg/L (hardness ~7 to 323 mgCaCO3/L) at chloride concentrations ranging from 0.39 to 3400 mg/L. We determined the effective concentration of chloride which was lethal to 50%, 25%, and 10% of the sample populations (EC50, EC25, and EC10, respectively) from each iso-female line in each calcium treatment after 48 hours of exposure without food.
DOI: 10.5683/sp3/9mwutl
title: Données de l'article "Characterizing seismic activity from a rock cliff with unsupervised learning"

description: Données de sismique passive acquises sur la paroi de Gros-Morne, Gaspésie, Canada

&lt;ul&gt;
&lt;li&gt;Unités d'acquisition: &lt;a href="https://nanometrics.ca/instrumentation/products/digitizers/pegasus"&gt;Nanometrics Pegasus&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Géophones: &lt;a href="http://www.hgsindia.com/PDF/454HG-6HS%20v1.2.pdf"&gt;HGS India HG-6HS&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Format des données: &lt;a href="https://www.seiscomp.de/seiscomp3/doc/applications/slarchive/SDS.html"&gt;SeisComP Data Structure (SDS) 1.0&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
DOI: 10.5683/sp3/yz4lts
title: Replication Data for: CampusFoodSurvey-test

description: This dataset includes all open format data for the project CampusFoodSurvey-test
DOI: 10.5683/sp3/bngne1
title: ARTiculatingCanadianIdentities_ArtBankData

description: This dataset was created and modeled for a master's thesis (ARTiculating Canadian Identities: The Canada Council Art Bank’s Mycelial Presence and Influence in the Realm of Canadian Fine Art) written by Jacoba Krina (Janneke) Van Hoeve.
DOI: 10.5683/sp3/8gmvi5
title: Replication Data for: Complaints Dataset

description: Dataset of complaints coded through transcript analysis of chats on Ask a Librarian between 2019 to 2021.
DOI: 10.5683/sp3/ras5gi
title: Replication data for: Drought comparison greenhouse study: Fairway height L-93 creeping bentgrass

description: The objective of this study was to assess numerous performance measures of turfgrass (L-93 Creeping bentgrass maintained at golf course fairway height) treated with the following products: CTD Ready-2-Mix (Suncor), Experimental CC (Suncor), Insignia SC, Heritage Action, Signature Xtra Stressgard, Water control treatment, Drought control treatment. Treatments were evaluated under both well-watered (no-stress) and drought stress conditions.
description: SAS, 9.4
description: Lyons' Lab Research Reports
DOI: 10.5683/sp3/gnnxzs
title: Replication data for: Evaluating new and existing formulants of trinexapac-ethyl on a golf green and fairway in Guelph, Ontario - A field study

description: This project tested existing formulations and new formulations of trinexepac-ethyl for the market of turfgrass growth regulation. The primary objective of the study was to determine if the formulations being tested in the trial provided similar performance in terms of their efficacy for regulating growth of both fairway and greens height turf. Performance was measured by how the treatments impacted turfgrass growth (clipping production), turfgrass phytotoxicity, and associated quality measures. The studies have provided information to the sponsor for purposes of registering new formulations of growth regulators for the Canadian market.
description: Lyons' Lab Research Reports
description: SAS, 9.4
DOI: 10.5683/sp3/kdns58
title: Replication Data for: G18-02A+B - Greens and fairway height growth regulator trial - A field study

description: The project evaluated the effect of Anuew (prohexadione-calcium) as compared with the industry standard, Primo Maxx (trinexepac-ethyl) on turfgrass growth and quality parameters on both a mature bentgrass-poa annua putting green and fairway height stand of turf. Performance was measured by how the treatments impacted turfgrass growth (clipping production), phytotoxicity where observed, and associated turfgrass quality measures.
description: Lyon's Lab Research Reports
description: SAS, 9.4
DOI: 10.5683/sp3/o0jvpc
title: Data for "Climate warming will test the limits of thermal plasticity in rainbow trout, a globally distributed fish"

description: This dataset contains all supplemental figures, tables, data files of physiological data and results of RNAseq analysis for the paper "Climate warming will test the limits of thermal plasticity in rainbow trout, a globally distributed fish". All raw sequencing data are available in NCBI under BioProject ID: PRJNA759286.
DOI: 10.5683/sp3/uvso6q
title: Data for: Sun, Ogushi, Tseng -Lepidoptera species richness and community composition in urban street trees

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;The triple threats of climate change, habitat loss, and environmental pollution have stimulated discussion on how urban areas can be modified to both mitigate heat increases and provide habitat for wildlife such as insects. The strategy of using trees to reduce temperatures has been adopted by numerous cities. However, the majority of street trees planted around the world are non-native. Studies conducted in non-urban areas have demonstrated in comparison to native plants, non-native plants are less likely to support native insect diversity. Here we use a database approach to quantify the number of native Lepidoptera species associated with 76 of the most common street tree species planted in Vancouver, Canada. We tested the prediction that compared to non-native trees, native street trees will support a higher diversity and unique community of native Lepidoptera. As predicted, native street trees were associated with five times as many native Lepidoptera species, and the Lepidoptera communities supported by native vs. non-native street trees were distinct. There was no difference in native Lepidoptera associations between broadleaf vs. coniferous street trees. These results are consistent with studies that have used active sampling techniques to investigate insect richness on a smaller subset of native and non-native tree species. Collectively, these data provide good evidence that the planting native instead of non-native trees will help stem the loss of insect diversity in urban areas.&lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Data were compiled from existing databases or published literature. No new data were collected.&lt;/p&gt;
description: <b>Dryad version number:</b> 6
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.3j9kd51r7
<b>Storage size:</b> 455997
<b>Visibility:</b> public
DOI: 10.5683/sp3/n8yboo
title: Mitochondrial phylogenomics of liverworts

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;&lt;strong&gt;Premise: &lt;/strong&gt;Liverworts, with approximately 7,300 species worldwide, exhibit remarkable morphological diversity, in terms of growth form, ontogeny and architecture. Based on phylogenetic inferences drawn from DNA data, including recent genomic-scale data, the relationships among families and orders have been constantly revised and refined, although new topological incongruences have emerged. The liverwort mitochondrial genome exhibits lower average substitution rates compared to their nuclear and plastid genomes, and shows less structural variation, suggesting its suitability for inferring relationships at higher taxonomic levels.&lt;/p&gt;
&lt;p&gt;&lt;strong&gt;Methods:&lt;/strong&gt; The mitochondrial genomes of 112 liverworts were sequenced, covering 105 species, 52 families and 18 orders. We analysed the structures of the liverwort mitogenomes using Mauve alignment. Maximum likelihood and Bayesian inference methods were used to infer a family-level phylogeny of liverworts.&lt;/p&gt;
&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;We assembled the complete mitochondrial genome for 23 species and identified four new structural variants. Phylogenetic inferences from mitochondrial genome sequences confirmed the monophyly of most suprafamilial taxa, with the expectations of Porellales, Ptilidiales, and Pelliidae. &lt;em&gt;Herzogianthus&lt;/em&gt; (Ptilidiales) was well-supported as a sister group to Jungermanniales sensu lato, rather than forming a monophyletic lineage with &lt;em&gt;Ptilidium &lt;/em&gt;(Ptilidiales). Given its distinct morphological traits, this genus should be singled out and elevated to a new order.&lt;/p&gt;
&lt;p&gt;&lt;strong&gt;Conclusions: &lt;/strong&gt;The overall architecture of liverwort mitogenomes remains highly conserved, with taxa that diverged over 470 Mya still having co-linear mitogenomes. This study provides a genetic resource for future evolutionary research across the liverworts and highlights the utility of mitogenome across lineages diversifying for 470 Mya, including for family‐level classification.&lt;/p&gt;
description: <b>Dryad version number:</b> 6
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.0p2ngf289
<b>Storage size:</b> 5081935
<b>Visibility:</b> public
DOI: 10.5683/sp3/wskh1n
title: Replication Data for: Fundamental Learning Differences Across Five Dog Breed Clades: Breed-specific Predispositions, Individual Experiences, or a Fusion of Both?

description: Learning is crucial for shaping domestic dogs’ behaviour through life experiences, yet not all breeds exhibit the same learning aptitude towards a particular task. The current study's objective was to identify differences in fundamental learning features across and within five breed clades and elucidate the underlying factors contributing into these differences. Dogs (N=111) from five different breed clades (UK Rural, Retrievers, Asian Spitz, European Mastiff, and New World) participated in a virtual learning task with their owners. Owners completed validated questionnaires of Impulsivity and Reward Responsiveness. The learning task comprised of reinforcing an arbitrary behaviour (hand-touch) through multiple sessions of Acquisition (reinforcing the hand-touch), Discrimination (reinforcing the hand-touch on one of two hands) and Reversal Learning (reinforcing the hand-touch on the opposite hand), followed by a single session of Extinction (hand-touch not reinforced). Results showed notable differences across the studied breed clades in certain learning components. However, these disparities may not solely stem from inherent cognitive variations among breeds but rather potentially influenced by contextual factors such as the human-dog communication dynamics attributed to breeds’ cooperativity. Furthermore, breed clades differed in the contributing factors predicting individual learning performances, which also highlights the potential effect of breeds’ historical function.