cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1185572
title: Grassland Experiment: Purple Castor Dataset

description: As a group, we decided to chose purple castors to observe because there was a high abundance of them within the grassland that we were observing. Also, we observed 35 purple castors during this experiment. We laid out the transect tape for 25 metes on the grassland and made sure that we had our respective plant of interest on either side of the transect tape. We chose purple castors that were either on the transect tape or 5 - 10 cm away from it in either direction (left or right). Since, there were four of us, we split into twos so that one group could observe the plants at the beginning of the transect tape and the other group was observing near the end. We observed different characteristics of each purple castor: distance on the transect tape, height, number of leaves, number of flowers and how crowded the area around the plant was. The height was determined by using the transect tape to measure how tall the plant was and the number of leaves was determined by counting all the leaves on each stem of the plant. The number of flowers was determined by counting all the flowers, including the buds, that were found on all the stems of the respective plant. Whether the area around the plant being observed was crowded was determined by the amount of other purple castors within the area. If there was more than two plants, the group decided to give the ranking of a 2. During, the process of counting and measuring, one of the group members was recording all the data that was given by the other members.
DOI: 10.6084/m9.figshare.1185577.v1
title: Supporting Figure for Descalzo et al Plos One 2014

description: Supporting figure illustrating amplitude of postafterhyperpolarization following different firing patterns.
DOI: 10.6084/m9.figshare.1185592.v1
title: Data for 99 neurons in the visual cortex

description: Table of parameters measured in intracellular recorded primary visual cortical neurons following different current injection protocols as in Descalzo et al 2014, Plos One.
DOI: 10.6084/m9.figshare.1185572.v1
title: Grassland Experiment: Purple Castor Dataset

description: As a group, we decided to chose purple castors to observe because there was a high abundance of them within the grassland that we were observing. Also, we observed 35 purple castors during this experiment. We laid out the transect tape for 25 metes on the grassland and made sure that we had our respective plant of interest on either side of the transect tape. We chose purple castors that were either on the transect tape or 5 - 10 cm away from it in either direction (left or right). Since, there were four of us, we split into twos so that one group could observe the plants at the beginning of the transect tape and the other group was observing near the end. We observed different characteristics of each purple castor: distance on the transect tape, height, number of leaves, number of flowers and how crowded the area around the plant was. The height was determined by using the transect tape to measure how tall the plant was and the number of leaves was determined by counting all the leaves on each stem of the plant. The number of flowers was determined by counting all the flowers, including the buds, that were found on all the stems of the respective plant. Whether the area around the plant being observed was crowded was determined by the amount of other purple castors within the area. If there was more than two plants, the group decided to give the ranking of a 2. During, the process of counting and measuring, one of the group members was recording all the data that was given by the other members.
DOI: 10.6084/m9.figshare.1185579.v2
title: Using growth and decline factors to project VOC emissions from oil and gas production

description: Projecting future-year emission inventories in the oil and gas sector is complicated by the fact that there is a life cycle to the amount of production from individual wells and thus from well fields in aggregate. Here we present a method to account for that fact in support of regulatory policy development. This approach also has application to air quality modeling inventories by adding a second tier of refinement to the projection methodology. Currently, modeling studies account for the future decrease in emissions due to new regulations based on the year those regulations are scheduled to take effect. The addition of a year-by-year accounting of production decline provides a more accurate picture of emissions from older, uncontrolled sources. This proof of concept approach is focused solely on oil production; however, it could be used for the activity and components of natural gas production to compile a complete inventory for a given area.Implications: <i>The Uinta Basin has unique atmospheric chemistry regimes during the winter that create ozone concentrations far exceeding those in the largest U.S. cities. This is also an area of complex regulatory authority shared among state, tribal, and federal agencies. This research accounts for regulations that are currently being implemented, and ties the effect of those regulations to emission factors used to estimate future-year inventories. This approach holds promise for future-year projections of oil and gas inventories for the region by providing a more representative life cycle of oil and gas emissions, including the disproportionate impact of older, uncontrolled sources.</i>
DOI: 10.6084/m9.figshare.1185579.v1
title: Using Growth and Decline Factors to Project VOC Emissions from Oil and Gas Production

description: ABSTRACTProjecting future year emission inventories in the oil and gas sector is complicated by the fact that there is a life cycle to the amount of production from individual wells and thus from well fields in aggregate. Here we present a method to account for that fact in support of regulatory policy development. This approach also has application to air quality modeling inventories by adding a second tier of refinement to the projection methodology. Currently, modeling studies account for the future decrease in emissions due to new regulations based on the year those regulations are scheduled to take effect. The addition of a year-by-year accounting of production decline provides a more accurate picture of emissions from older, uncontrolled sources. This proof of concept approach is focused solely on oil production; however, it could be used for the activity and components of natural gas production to compile a complete inventory for a given area. ImplicationsThe Uinta Basin has unique atmospheric chemistry regimes during the winter which create ozone concentrations far exceeding those in the largest U.S. cities. This is also an area of complex regulatory authority shared among state, tribal, and federal agencies. This research accounts for regulations that are currently being implemented, and ties the effect of those regulations to emission factors used to estimate future-year inventories. This approach holds promise for future-year projections of oil and gas inventories for the region by providing a more representative life cycle of oil and gas emissions, including the disproportionate impact of older, uncontrolled sources.
DOI: 10.6084/m9.figshare.1185537
title: Late Cretaceous extension and Palaeogene rotation-related contraction in Central Anatolia recorded in the Ayhan-Büyükkışla basin

description: The configuration and evolution of subduction zones in the Eastern Mediterranean region in Cretaceous time accommodating Africa–Europe convergence remain poorly quantitatively reconstructed, owing to a lack of kinematic constraints. A recent palaeomagnetic study suggested that the triangular Central Anatolian Crystalline Complex (CACC) consists of three blocks that once formed an ~N–S elongated continental body, underthrusted below ophiolites in Late Cretaceous time. After extensional exhumation and upon Palaeogene collision of the CACC with the Pontides of the southern Eurasian margin, the CACC broke into three fragments that rotated and converged relative to each other. Here, we date the extension and contraction history of the boundary between two of the rotating massifs of the CACC by studying the Upper Cretaceous–Palaeogene Ayhan–Büyükkışla basin. We report an <sup>40</sup>Ar/<sup>39</sup>Ar age of an andesite at the base of the sequence to show that the deposition started in an E–W extensional basin around 72.11 ± 1.46. The basin developed contemporaneously with regional exhumation of the CACC metamorphics. The lower basin sedimentary rocks were unconformably covered by mid-Eocene limestones and redbeds, followed by intense folding and thrust faulting. Two balanced cross-sections in the study area yield a minimum of 17–27 km of post-mid-Eocene ~N–S shortening. We thus demonstrate the Cenozoic compressional nature of the Kırşehir–Niğde-Hırkadağ block boundary and show that the extensional exhumation of the CACC predates collision-related contraction. A plate kinematic scenario is required to explain these observations that involves two Late Cretaceous–Palaeogene subduction zones to the north and south of the CACC, for which we show a possible plate boundary configuration.
DOI: 10.6084/m9.figshare.1185539
title: Transmembrane helix 6 observed at the interface of β<sub>2</sub>AR homodimers in blind docking studies

description: Peptide– and protein–protein dockings were carried out on β<sub>2</sub>-adrenergic receptor (β<sub>2</sub>AR) to confirm the presence of transmembrane helix 6 (TM6) at the interface region between two β<sub>2</sub>AR monomers, thereby its possible role in dimerization as suggested in numerous experimental and computational studies. Initially, a portion of TM6 was modeled as a peptide consisting of 23 residues and blindly docked to β<sub>2</sub>AR monomer using a rigid body approach. Interestingly, all highest score conformations preferred to be near TM5 and TM6 regions of the receptor. Furthermore, longer peptides generated from a whole TM region were blindly docked to β<sub>2</sub>AR using the same rigid body approach. This yielded a total of seven docked peptides, each derived from one TM helix. Most interestingly, for each peptide, TM6 was among the most preferred binding site region in the receptor. Besides the peptide dockings, two β<sub>2</sub>AR monomers were blindly docked to each other using a full rigid-body search of docking orientations, which yielded a total of 16,000 dimer conformations. Each dimer was then filtered according to a fitness value based on the membrane topology. Among 149 complexes that met the topology requirements, 102 conformers were composed of two monomers oriented in opposite directions, whereas in the remaining 47, the monomers were arranged in parallel. Lastly, all 149 conformers were clustered based on a root mean-squared distance value of 6 Å. In agreement with the peptide results, the clustering yielded the largest population of conformers with the highest Z-score value having TM6 at the interface region.
DOI: 10.6084/m9.figshare.1185539.v2
title: Transmembrane helix 6 observed at the interface of β<sub>2</sub>AR homodimers in blind docking studies

description: Peptide– and protein–protein dockings were carried out on β<sub>2</sub>-adrenergic receptor (β<sub>2</sub>AR) to confirm the presence of transmembrane helix 6 (TM6) at the interface region between two β<sub>2</sub>AR monomers, thereby its possible role in dimerization as suggested in numerous experimental and computational studies. Initially, a portion of TM6 was modeled as a peptide consisting of 23 residues and blindly docked to β<sub>2</sub>AR monomer using a rigid body approach. Interestingly, all highest score conformations preferred to be near TM5 and TM6 regions of the receptor. Furthermore, longer peptides generated from a whole TM region were blindly docked to β<sub>2</sub>AR using the same rigid body approach. This yielded a total of seven docked peptides, each derived from one TM helix. Most interestingly, for each peptide, TM6 was among the most preferred binding site region in the receptor. Besides the peptide dockings, two β<sub>2</sub>AR monomers were blindly docked to each other using a full rigid-body search of docking orientations, which yielded a total of 16,000 dimer conformations. Each dimer was then filtered according to a fitness value based on the membrane topology. Among 149 complexes that met the topology requirements, 102 conformers were composed of two monomers oriented in opposite directions, whereas in the remaining 47, the monomers were arranged in parallel. Lastly, all 149 conformers were clustered based on a root mean-squared distance value of 6 Å. In agreement with the peptide results, the clustering yielded the largest population of conformers with the highest Z-score value having TM6 at the interface region.
DOI: 10.6084/m9.figshare.1185537.v2
title: Late Cretaceous extension and Palaeogene rotation-related contraction in Central Anatolia recorded in the Ayhan-Büyükkışla basin

description: The configuration and evolution of subduction zones in the Eastern Mediterranean region in Cretaceous time accommodating Africa–Europe convergence remain poorly quantitatively reconstructed, owing to a lack of kinematic constraints. A recent palaeomagnetic study suggested that the triangular Central Anatolian Crystalline Complex (CACC) consists of three blocks that once formed an ~N–S elongated continental body, underthrusted below ophiolites in Late Cretaceous time. After extensional exhumation and upon Palaeogene collision of the CACC with the Pontides of the southern Eurasian margin, the CACC broke into three fragments that rotated and converged relative to each other. Here, we date the extension and contraction history of the boundary between two of the rotating massifs of the CACC by studying the Upper Cretaceous–Palaeogene Ayhan–Büyükkışla basin. We report an <sup>40</sup>Ar/<sup>39</sup>Ar age of an andesite at the base of the sequence to show that the deposition started in an E–W extensional basin around 72.11 ± 1.46. The basin developed contemporaneously with regional exhumation of the CACC metamorphics. The lower basin sedimentary rocks were unconformably covered by mid-Eocene limestones and redbeds, followed by intense folding and thrust faulting. Two balanced cross-sections in the study area yield a minimum of 17–27 km of post-mid-Eocene ~N–S shortening. We thus demonstrate the Cenozoic compressional nature of the Kırşehir–Niğde-Hırkadağ block boundary and show that the extensional exhumation of the CACC predates collision-related contraction. A plate kinematic scenario is required to explain these observations that involves two Late Cretaceous–Palaeogene subduction zones to the north and south of the CACC, for which we show a possible plate boundary configuration.
DOI: 10.6084/m9.figshare.1185539.v1
title: Transmembrane helix 6 observed at the interface of β<sub>2</sub>AR homodimers in blind docking studies

description: Peptide– and protein–protein dockings were carried out on β<sub>2</sub>-adrenergic receptor (β<sub>2</sub>AR) to confirm the presence of transmembrane helix 6 (TM6) at the interface region between two β<sub>2</sub>AR monomers, thereby its possible role in dimerization as suggested in numerous experimental and computational studies. Initially, a portion of TM6 was modeled as a peptide consisting of 23 residues and blindly docked to β<sub>2</sub>AR monomer using a rigid body approach. Interestingly, all highest score conformations preferred to be near TM5 and TM6 regions of the receptor. Furthermore, longer peptides generated from a whole TM region were blindly docked to β<sub>2</sub>AR using the same rigid body approach. This yielded a total of seven docked peptides, each derived from one TM helix. Most interestingly, for each peptide, TM6 was among the most preferred binding site region in the receptor. Besides the peptide dockings, two β<sub>2</sub>AR monomers were blindly docked to each other using a full rigid-body search of docking orientations, which yielded a total of 16,000 dimer conformations. Each dimer was then filtered according to a fitness value based on the membrane topology. Among 149 complexes that met the topology requirements, 102 conformers were composed of two monomers oriented in opposite directions, whereas in the remaining 47, the monomers were arranged in parallel. Lastly, all 149 conformers were clustered based on a root mean-squared distance value of 6 Å. In agreement with the peptide results, the clustering yielded the largest population of conformers with the highest Z-score value having TM6 at the interface region.
DOI: 10.6084/m9.figshare.1185535
title: Increase in rare earth element concentrations controlled by dissolved organic matter in river water during rainfall events in a temperate, small forested catchment

description: The distributions of dissolved rare earth elements (REEs) in river water during rainfall events in a forested catchment were studied to contribute to understandings of TRUs behavior. Variations in the concentrations of dissolved REEs and several elements (As, Sb, and V) apparently correlated well with peak intensities in the optical spectra (ultraviolet absorption and fluorescence emission) of the river water. The optical properties were considered to represent humic substances in dissolved organic matter (DOM). Similar hysteretic loops were found for the REE concentrations and optical intensities as a function of the water discharge. This result indicates that the mobile REEs and DOM likely shared flow paths from the soil to the stream during these events. An ultrafiltration study revealed that colloidal REEs present in a size fraction of 10–30 kilodaltons comprised the major component of the dissolved REEs and increased under high water flow. Considering these observations and model interpretations in the precedent literature, complexation of the dissolved REEs with DOM was suggested to occur during the studied rainfall events. A high correlation between the size-fractionated REE concentrations and specific ultraviolet absorbance was observed, suggesting that the aromaticity of DOM plays a role in its complexation with dissolved REEs.
DOI: 10.6084/m9.figshare.1185537.v1
title: Late Cretaceous extension and Palaeogene rotation-related contraction in Central Anatolia recorded in the Ayhan-Büyükkışla basin

description: The configuration and evolution of subduction zones in the Eastern Mediterranean region in Cretaceous time accommodating Africa–Europe convergence remain poorly quantitatively reconstructed, owing to a lack of kinematic constraints. A recent palaeomagnetic study suggested that the triangular Central Anatolian Crystalline Complex (CACC) consists of three blocks that once formed an ~N–S elongated continental body, underthrusted below ophiolites in Late Cretaceous time. After extensional exhumation and upon Palaeogene collision of the CACC with the Pontides of the southern Eurasian margin, the CACC broke into three fragments that rotated and converged relative to each other. Here, we date the extension and contraction history of the boundary between two of the rotating massifs of the CACC by studying the Upper Cretaceous–Palaeogene Ayhan–Büyükkışla basin. We report an <sup>40</sup>Ar/<sup>39</sup>Ar age of an andesite at the base of the sequence to show that the deposition started in an E–W extensional basin around 72.11 ± 1.46. The basin developed contemporaneously with regional exhumation of the CACC metamorphics. The lower basin sedimentary rocks were unconformably covered by mid-Eocene limestones and redbeds, followed by intense folding and thrust faulting. Two balanced cross-sections in the study area yield a minimum of 17–27 km of post-mid-Eocene ~N–S shortening. We thus demonstrate the Cenozoic compressional nature of the Kırşehir–Niğde-Hırkadağ block boundary and show that the extensional exhumation of the CACC predates collision-related contraction. A plate kinematic scenario is required to explain these observations that involves two Late Cretaceous–Palaeogene subduction zones to the north and south of the CACC, for which we show a possible plate boundary configuration.
DOI: 10.6084/m9.figshare.1185523
title: RESOURSES OF OPEN ACCESS AS A TOOL FOR FORMATION OF SCIENTIFIC RATING OF SCIENTISTS

description: Purpose. Scientific journals in open access play an important role in scientific communications. It is they are able to provide an operational studying the leading publications and their scientific substantiation in the form of reference to the works of authors that were used in the research. The achievement of high citation index is an important component of scientific activity for the modern scientist. The purpose of the article is to determine the tools to increase the citation index of scientists. Methodology. The methods of generalization, analysis and synthesis, as well as a systematic approach were used in the research.Findings. The university library has an important mission - to distribute the results of research activity of the university scientists. As part of this functional activity area of the scientific and technical library of DNURT a repository of scientific papers, a system of open access for scientific journals and online versions of proceedings were organized. These resources provide the opportunity for a wide range of scientists to study the results of research carried out by their colleagues in DNURT and to cite them in their own articles. During the scientometric research the library staff use the following information platforms: Google Scholar, SciVerse Scopus, DOAJ, Russian Science Citation Index, SCImago Journal & Country Rank. Originality. The work originality is the determination of the ways to influence the formation of the high citation index for scientist. Practical value. The article proves the feasibility of using the open access resources (electronic journals, proceedings and the institutional repositories) to gain the scientist popularity in the professional scientific community.
DOI: 10.6084/m9.figshare.1185521
title: New Approaches in Joint

description: New Approaches
DOI: 10.6084/m9.figshare.1185523.v1
title: RESOURSES OF OPEN ACCESS AS A TOOL FOR FORMATION OF SCIENTIFIC RATING OF SCIENTISTS

description: Purpose. Scientific journals in open access play an important role in scientific communications. It is they are able to provide an operational studying the leading publications and their scientific substantiation in the form of reference to the works of authors that were used in the research. The achievement of high citation index is an important component of scientific activity for the modern scientist. The purpose of the article is to determine the tools to increase the citation index of scientists. Methodology. The methods of generalization, analysis and synthesis, as well as a systematic approach were used in the research.Findings. The university library has an important mission - to distribute the results of research activity of the university scientists. As part of this functional activity area of the scientific and technical library of DNURT a repository of scientific papers, a system of open access for scientific journals and online versions of proceedings were organized. These resources provide the opportunity for a wide range of scientists to study the results of research carried out by their colleagues in DNURT and to cite them in their own articles. During the scientometric research the library staff use the following information platforms: Google Scholar, SciVerse Scopus, DOAJ, Russian Science Citation Index, SCImago Journal & Country Rank. Originality. The work originality is the determination of the ways to influence the formation of the high citation index for scientist. Practical value. The article proves the feasibility of using the open access resources (electronic journals, proceedings and the institutional repositories) to gain the scientist popularity in the professional scientific community.