cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18413968
title: GABAergic Gbx1 Neurons of the Superficial Dorsal Horn Are Critical Elements of a Spinal Circuit for Stress-Induced Analgesia

description: Raw data relating to the publication "GABAergic Gbx1 Neurons of the Superficial Dorsal Horn Are Critical Elements of a Spinal Circuit for Stress-Induced Analgesia" in Neuron 2026.

Summary

Acute stress is a powerful inducer of endogenous analgesia. Several brainstem and midbrain areas have been identified that are activated during stress and send descending axons to suppress spinal nociception. The spinal effector circuits and neurons have, however, remained largely elusive. Here, we demonstrate that GABAergic interneurons of the superficial dorsal horn expressing the transcription factor Gbx1 are key elements of these circuits. Their inhibition had little effect on nociception under resting conditions, but completely abolished swim stress-induced analgesia. Retrograde monosynaptic tracing revealed input from several brain areas, most prominently from the rostral ventromedial medulla (RVM). Optogenetic circuit tracing demonstrated that this input is inhibitory, and that Gbx1 neurons in turn inhibit projection neurons targeting the lateral parabrachial nucleus, a key area in supraspinal pain relay. Our results thus identify a subpopulation of GABAergic neurons in the superficial dorsal horn as key elements of a disinhibitory circuit for stress-induced analgesia.
DOI: 10.6084/m9.figshare.31187745
title: A machine learning-based closure for unsteady RANS simulations of vortex shedding

description: Accurate computational fluid dynamics (CFD) simulations of complex unsteady flows, which are critical for aircraft design and certification, are often limited by uncertainties inherent in turbulence models, particularly those relying on the Boussinesq approximation. This study introduces a novel CFD-Driven machine learning (ML) framework utilizing Gene Expression Programming (GEP) to develop an interpretable and integrable anisotropic Reynolds stress tensor closure. Uniquely, this framework incorporates iterative URANS simulations and explicitly targets unsteady flow indicators, representing a pioneering approach to turbulence model development. The methodology was applied to the canonical problem of vortex shedding around a square cylinder, utilizing high-fidelity data generated by an in-house 3D DNS code for training, alongside 2D URANS simulations performed using OpenFOAM. The baseline 2D URANS (based on the Spalart-Allmaras model) exhibited significant discrepancies in both mean velocity and Strouhal number predictions compared to the 3D DNS reference. To address this, the SA model was optimized via the proposed framework using both single- and multi-objective strategies. Our analysis revealed that nonlinear terms primarily drove improvements in the mean velocity field, while linear terms were essential for enhancing Strouhal number accuracy. The improvement in the mean field was correlated with increased mean vorticity (and the consequent reduction of excessive turbulent diffusion) in the wake. Conversely, the enhancement of the Strouhal number was physically linked to the suppression of unphysical low-frequency energy and the distinct amplification of the shedding frequency peak in the power spectral density. Among the single-objective strategies, optimization targeting the Strouhal number proved notably effective, yielding practical improvements in both variables. This research successfully demonstrates the framework's capability to enhance URANS predictions of both time-averaged and unsteady flow features, thereby significantly advancing the development of reliable and interpretable CFD tools for industrial applications.
DOI: 10.6084/m9.figshare.31187745.v1
title: A machine learning-based closure for unsteady RANS simulations of vortex shedding

description: Accurate computational fluid dynamics (CFD) simulations of complex unsteady flows, which are critical for aircraft design and certification, are often limited by uncertainties inherent in turbulence models, particularly those relying on the Boussinesq approximation. This study introduces a novel CFD-Driven machine learning (ML) framework utilizing Gene Expression Programming (GEP) to develop an interpretable and integrable anisotropic Reynolds stress tensor closure. Uniquely, this framework incorporates iterative URANS simulations and explicitly targets unsteady flow indicators, representing a pioneering approach to turbulence model development. The methodology was applied to the canonical problem of vortex shedding around a square cylinder, utilizing high-fidelity data generated by an in-house 3D DNS code for training, alongside 2D URANS simulations performed using OpenFOAM. The baseline 2D URANS (based on the Spalart-Allmaras model) exhibited significant discrepancies in both mean velocity and Strouhal number predictions compared to the 3D DNS reference. To address this, the SA model was optimized via the proposed framework using both single- and multi-objective strategies. Our analysis revealed that nonlinear terms primarily drove improvements in the mean velocity field, while linear terms were essential for enhancing Strouhal number accuracy. The improvement in the mean field was correlated with increased mean vorticity (and the consequent reduction of excessive turbulent diffusion) in the wake. Conversely, the enhancement of the Strouhal number was physically linked to the suppression of unphysical low-frequency energy and the distinct amplification of the shedding frequency peak in the power spectral density. Among the single-objective strategies, optimization targeting the Strouhal number proved notably effective, yielding practical improvements in both variables. This research successfully demonstrates the framework's capability to enhance URANS predictions of both time-averaged and unsteady flow features, thereby significantly advancing the development of reliable and interpretable CFD tools for industrial applications.
DOI: 10.15468/dl.pbvust
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus chingii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 298 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005864-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5dggz3yyzv
title: Supplemental Material - Antimicrobial Resistance in Pets: Trends, Threats & Takeaways for 2025

description: This file contains all the supplemental material for the article: Antimicrobial Resistance in Pets: Trends, Threats & Takeaways for 2025, in the following order: Supplemental Text 1 – Other Antimicrobial-Resistant Organisms and Species; Supplemental Text 2 – Mapping Methodology; Supplemental Table I; Supplemental Table II; Supplemental Table III; Supplemental References
DOI: 10.17632/5dggz3yyzv.1
title: Supplemental Material - Antimicrobial Resistance in Pets: Trends, Threats & Takeaways for 2025

description: This file contains all the supplemental material for the article: Antimicrobial Resistance in Pets: Trends, Threats & Takeaways for 2025, in the following order: Supplemental Text 1 – Other Antimicrobial-Resistant Organisms and Species; Supplemental Text 2 – Mapping Methodology; Supplemental Table I; Supplemental Table II; Supplemental Table III; Supplemental References
DOI: 10.15468/dl.mkunwe
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Soejatmia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005865-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gh5thr
title: Occurrence Download

description: A dataset containing 1729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus coreanus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1729 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005866-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ur3yh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Temochloa",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005867-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gn75f35ybc
title: Duy et al., 2011. Raw data for Figure 2d and Supplement Figure 21c-d

description: Corrected Figure 2d and Supplemental Figure 21c-d
DOI: 10.17632/gn75f35ybc.2
title: Duy et al., 2011. Raw data for Figure 2d and Supplement Figure 21c-d

description: Corrected Figure 2d and Supplemental Figure 21c-d
DOI: 10.15468/dl.ec9h3q
title: Occurrence Download

description: A dataset containing 81669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hediste",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 81669 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005838-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gj8nybrk93
title: Prospection participative et inventaires pleins : une voie simplifiée vers l’élaboration des plans de gestion au Cameroun

description: Community forestry in Cameroon faces persistent challenges due to the high cost and technical complexity of conventional multi-resource inventories required for Simple Management Plans (SMPs). This study evaluates an alternative methodological approach tested in the “Solidarité” community forest (Mintom, 5,000 ha), combining participatory prospection across the entire forest with a full inventory in a 1,000-ha sector. The participatory prospection, conducted according to the national community forestry guidelines (MINFOF, 2009), covered 429.51 ha (sampling rate: 8.59%), recorded 5,277 trees, and identified key areas with valuable timber species, non-timber forest products (NTFPs), and wildlife indicators. The full inventory, conducted under national exploitation standards, estimated an exploitable timber volume of 8815 m³ (20.52 m³/ha). Costs were significantly reduced (1 010 800 FCFA FCFA for participatory prospection and 3,853,000 FCFA for the full inventory) compared with the 10–15 million FCFA required for conventional inventories. This combined approach enhances local governance, reduces dependency on external support, and provides a replicable, normative, and cost-effective alternative for community forests in dense tropical forest zones.
DOI: 10.17632/gj8nybrk93.2
title: Prospection participative et inventaires pleins : une voie simplifiée vers l’élaboration des plans de gestion au Cameroun

description: Community forestry in Cameroon faces persistent challenges due to the high cost and technical complexity of conventional multi-resource inventories required for Simple Management Plans (SMPs). This study evaluates an alternative methodological approach tested in the “Solidarité” community forest (Mintom, 5,000 ha), combining participatory prospection across the entire forest with a full inventory in a 1,000-ha sector. The participatory prospection, conducted according to the national community forestry guidelines (MINFOF, 2009), covered 429.51 ha (sampling rate: 8.59%), recorded 5,277 trees, and identified key areas with valuable timber species, non-timber forest products (NTFPs), and wildlife indicators. The full inventory, conducted under national exploitation standards, estimated an exploitable timber volume of 8815 m³ (20.52 m³/ha). Costs were significantly reduced (1 010 800 FCFA FCFA for participatory prospection and 3,853,000 FCFA for the full inventory) compared with the 10–15 million FCFA required for conventional inventories. This combined approach enhances local governance, reduces dependency on external support, and provides a replicable, normative, and cost-effective alternative for community forests in dense tropical forest zones.
DOI: 10.15468/dl.twnhvv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sanguisorba minor",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005869-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qv7sg
title: Occurrence Download

description: A dataset containing 46830 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Saltabel - Orthoptera in Belgium"
 ]
}

 The dataset includes 46830 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005868-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25824/redu/hbuciu
title: Dados de replicação para a tese "Bebida de aveia fermentada por Lacticaseibacillus rhamnosus LRB: desenvolvimento tecnológico e avaliação in vitro do potencial simbiótico"

description: Este conjunto de dados compreende os resultados quantitativos que fundamentam a tese de doutorado sobre o desenvolvimento e potencial simbiótico de uma bebida de aveia fermentada por Lacticaseibacillus rhamnosus LRB. Os dados são de natureza experimental e laboratorial, apresentados sob a forma de médias e desvios-padrão, organizados em abas específicas dentro de um único arquivo de planilha. O escopo atualmente disponível abrange os indicadores já publicados, divididos conforme a organização das abas em: parâmetros de fermentação, caracterização (dosagem de inulina, açúcares e ácidos orgânicos) e modulação da microbiota intestinal (avaliado pelo sistema dinâmico TIM-2. Estes dados constituem a base para o processamento estatístico, geração de gráficos e tabelas presentes na tese, permitindo a replicação integral das análises e a verificação da eficácia da bebida como alternativa funcional plant-based. Observação de Proteção Intelectual: Os demais dados não podem ser disponibilizados no momento por questões de proteção intelectual. Para mais informações, contatar os responsáveis. Este arquivo será editado e atualizado após a publicação formal dos artigos pendentes.
DOI: 10.15468/dl.g9bt8u
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thyrsostachys",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 50 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005870-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26188/31180492
title: raw data from multiple experiments

description: The aphid endosymbiont <i>Regiella insecticola</i> (hereafter referred to as <i>Regiella</i>) occurs naturally in <i>Myzus persicae</i> and has potential biocontrol applications due to its virus inhibiting properties and fitness effects on aphids. Here, we examined the effects of native <i>Regiella</i> in two clones of <i>M. persicae</i><i> </i>from Australia collected two decades apart, with the aim of assessing whether these effects could explain the persistence of <i>Regiella</i> in natural populations.
DOI: 10.26188/31180492.v1
title: raw data from multiple experiments

description: The aphid endosymbiont <i>Regiella insecticola</i> (hereafter referred to as <i>Regiella</i>) occurs naturally in <i>Myzus persicae</i> and has potential biocontrol applications due to its virus inhibiting properties and fitness effects on aphids. Here, we examined the effects of native <i>Regiella</i> in two clones of <i>M. persicae</i><i> </i>from Australia collected two decades apart, with the aim of assessing whether these effects could explain the persistence of <i>Regiella</i> in natural populations.
DOI: 10.15468/dl.mfhrxt
title: Occurrence Download

description: A dataset containing 1774 records in GBIF matching the query:
SELECT
 '584' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 61.2993700571118
 AND decimalLatitude &lt;= 66.79314043790278
 AND decimalLongitude &gt;= 47.46254604283038
 AND decimalLongitude &lt;= 62.86027460742454
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1774 records were derived from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005856-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pdpeeq
title: Occurrence Download

description: A dataset containing 664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Russian Federation, Kazakhstan, Mongolia, Uzbekistan, unknown or invalid, Kyrgyzstan, Korea, Republic of, Syrian Arab Republic)",
 "TaxonKey is Kalidium foliatum"
 ]
}

 The dataset includes 664 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005872-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etdzpy
title: Occurrence Download

description: A dataset containing 36227 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observations.be - Orthoptera occurrences in Wallonia, Belgium"
 ]
}

 The dataset includes 36227 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005873-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arru8w
title: Occurrence Download

description: A dataset containing 6630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perinereis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6630 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005874-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxzbjy
title: Occurrence Download

description: A dataset containing 336103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is one of (Eragrostis rogersii, Eragrostis omahekensis, Aegilops tauschii, Digitaria debilis, Avena barbata, Sarga timorensis, Aegilops ventricosa, Echinochloa colonum, Eriochloa australiensis, Bromus pectinatus, Andropogon pseudapricus, Urochloa holosericea, Agrostis parviflora, Aegilops umbellulata, Bromus lanceolatus, Urochloa brachyura, Urochloa, Phaseolus acutifolius, Bromus madritensis, Aegilops comosa, Avena strigosa, Schizachyrium exile, Setaria grisebachii, Rostraria hispida, Eleusine coracana, Lathyrus belinensis, Aegilops kotschyi, Bouteloua aristidoides, Elionurus elegans)"
 ]
}

 The dataset includes 336103 records from 2076 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005717-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/67wpdz
title: A14_26545.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/ca0d48ae-8a66-4cc4-b028-11e506c86375'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/ca0d48ae-8a66-4cc4-b028-11e506c86375
DOI: 10.7910/dvn/gw5doa
title: Genome-wide CNV analysis reveals candidate genes associated with milk production traits in water buffalo (Bubalus bubalis)

description: Not applicable
DOI: 10.7910/dvn/stra2p
title: Replication Data for: Progression from latent infection to active disease in dynamic TB transmission models: a systematic review of the validity of modelling assumptions.

description: This file contains datasets and code to reproduce analyses undertaken for Menzies NA et al (2018) "Progression from latent infection to active disease in dynamic TB transmission models: a systematic review of the validity of modelling assumptions." published in Lancet Infectious Diseases. 

This study was funded by the U.S. Centers for Disease Control and Prevention, National Center for HIV, Viral Hepatitis, STD, and TB Prevention Epidemiologic and Economic Modeling Agreement #5U38PS004642. Peter White received funding from the United Kingdom National Institute for Health Research (NIHR) Health Protection Research Unit in Modelling Methodology at Imperial College London, in partnership with Public Health England (HPRU-2012-10080) and the Medical Research Council (MR/K010174/1). IA is funded by NIHR (SRF-2011-04-001; NF-SI-0616-10037), MRC and the Wellcome Trust.
DOI: 10.7910/dvn/yjizbj
title: Replication Data for: Real, but Limited: A Meta-Analytic Assessment of Framing Effects in the Political Domain

description: This includes the replication R code, data, and a codebook.
DOI: 10.7910/dvn/enmyi8
title: SEAMS - Standardized ethnically attributed mass surveys

description: SEAMS integrates a large number of global and regional mass surveys, such as the World Values Surveys and the Afrobarometer. It serves two purposes:
- First, it provides standardized information for major public opinion concepts, for instance on (dis-)satisfaction with government institutions and perceptions of belonging to a discriminated group. 
- Second, it provides systematic information on survey respondents’ ethnicity, region of residence, language, religion, and phenotype, which is linked to existing datasets, including EPR and CPSD. 
Thereby, it enables researchers to study how time-varying country- or group-level variables (such as democratization, GDP growth, and ethnic power-sharing) affect public opinion and vice versa. 
The current version integrates information from 98 unique survey waves, which together cover 2’071’315 respondents nested in 1372 country years and 148 countries. 
Future releases will add more variables (e.g., on ethnic identification and party choice), surveys, and information on the heterogeneous question items underlying SEAMS’ standardized variables.
DOI: 10.7910/dvn/hfmrnf
title: Nutritious Pond On-farm field experiment in Vietnam- 2017

description: Data set and protocols for 2017 experiments in Vietnam. The data comprise:
- Experimental protocol
- Growth data
- Input and output pond data
- Monitoring form
- Water quality data