cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.grvpgt
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Burundi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007359-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7jx4n
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pisidium amnicum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 78 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007362-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auxdab
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Cameroon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 136 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007363-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgb7s3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Sylvia nisoria)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007365-250802193616735/datasets/export for details.
DOI: 10.15468/dl.wmzycw
title: Occurrence Download

description: A dataset containing 5634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "TaxonKey is Elephas maximus"
 ]
}

 The dataset includes 5634 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007367-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgx2n2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAD6443"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007368-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8adeh
title: Occurrence Download

description: A dataset containing 776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Sylvia nisoria)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 776 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007369-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nw3tzm
title: Occurrence Download

description: A dataset containing 554771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is TRUE",
 "TaxonKey is one of (Pinnatella anacamptolepis, Sematophyllum tristiculum, Meteoriopsis ancistrodes, Geodorum densiflorum, Andrographis paniculata, Asystasia gangetica, Graptophyllum pictum, Avicennia marina, Ruellia tuberosa, Hydnocarpus gracilis, Pangium edule, Celosia argentea, Cyathula prostrata, Amaranthus spinosus, Proiphys amboinensis, Allium cepa, Allium sativum, Allium tuberosum, Dracontomelon dao, Mangifera indica, Spondias mombin, Mangifera lalijiwa, Gluta renghas, Mangifera foetida, Mangifera odorata, Anacardium occidentale, Meiogyne virgata, Polyalthia lateriflora, Cananga odorata, Mitrephora polypyrena, Annona muricata, Polyalthia longifolia, Stelechocarpus burahol, Alphonsea elliptica, Eryngium foetidum, Centella asiatica, Catharanthus roseus, Alstonia scholaris, Hoya, Cerbera manghas, Alstonia, Epipremnum pinnatum, Homalomena occulta, Colocasia esculenta, Anadendrum microstachyum, Scindapsus, Anadendrum latifolium, Amorphophallus variabilis, Homalomena griffithii, Hydrocotyle sibthorpioides, Nypa fruticans, Cocos nucifera, Metroxylon sagu, Pinanga coronata, Cordyline fruticosa, Acanthephippium, Asplenium salignum, Asplenium pellucidum, Asplenium normale, Asplenium praemorsum, Asplenium nidus, Asplenium batuense, Asplenium tenerum, Asplenium unilaterale, Bidens pilosa, Asteraceae, Eleutheranthera ruderalis, Emilia sonchifolia, Cyanthillium cinereum, Wedelia triloba, Galinsoga parviflora, Eleutheranthera, Crassocephalum crepidioides, Tridax procumbens, Ageratum, Synedrella nodiflora, Crassocephalum, Cosmos caudatus, Ageratum conyzoides, Mikania micrantha, Erechtites valerianifolia, Diplazium angustipinna, Diplazium cordifolium, Diplazium sorzogonense, Diplazium, Diplazium riparium, Diplazium subserratum, Diplazium esculentum, Diplazium dilatatum, Diplazium bantamense, Diplazium crenatoserratum, Impatiens, Impatiens platypetala, Impatiens balsamina, Impatiens auricoma, Plantae, Philonotis hastata, Begonia robusta, Kigelia africana)"
 ]
}

 The dataset includes 554771 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007346-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmvm9r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ramphotyphlops braminus",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007370-250802193616735/datasets/export for details.
DOI: 10.15468/dl.2bma9e
title: Occurrence Download

description: A dataset containing 6885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lerodea eufala"
 ]
}

 The dataset includes 6885 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007371-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxsns7
title: Occurrence Download

description: A dataset containing 1 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (CAST(occurrence.taxonkey AS INTEGER) = 1010360 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 1010360 OR CAST(occurrence.kingdomkey AS INTEGER) = 1010360 OR CAST(occurrence.phylumkey AS INTEGER) = 1010360 OR CAST(occurrence.classkey AS INTEGER) = 1010360 OR CAST(occurrence.orderkey AS INTEGER) = 1010360 OR CAST(occurrence.familykey AS INTEGER) = 1010360 OR CAST(occurrence.genuskey AS INTEGER) = 1010360 OR CAST(occurrence.specieskey AS INTEGER) = 1010360)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007338-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4ux2g
title: Occurrence Download

description: A dataset containing 1290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes chloris)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1290 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007372-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m564y6
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aphyosemion escherichi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 30 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007374-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xagbub
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Cabo Verde",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007375-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kyx7ha
title: Occurrence Download

description: A dataset containing 30896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes ganeesa)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 30896 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007373-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzdgvm
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Central African Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007376-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvde5s
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Chad",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007377-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3vfgn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callionymus nasutus"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007378-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sue5dm
title: Occurrence Download

description: A dataset containing 2257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Occidryas editha"
 ]
}

 The dataset includes 2257 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007380-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3a8vx2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monochoria vaginalis",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007379-250802193616735/datasets/export for details.
DOI: 10.15468/dl.pk6xs2
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphaerium corneum",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 65 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007381-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3skw8u
title: Occurrence Download

description: A dataset containing 1122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes everetti)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1122 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007382-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2uztd7
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes catarmanensis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 123 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007383-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr5vku
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paragalaxias eleotroides)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007384-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbqc8w
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 360 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007385-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ha9wd9
title: Occurrence Download

description: A dataset containing 2956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2956 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007386-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gp56j
title: Occurrence Download

description: A dataset containing 10877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brephidium exilis"
 ]
}

 The dataset includes 10877 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007387-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjx6zx
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callogobius amikami"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007388-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25q3mr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria dictyoneura",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007389-250802193616735/datasets/export for details.
DOI: 10.15468/dl.b4pqnm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachiaria dictyoneura",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007390-250802193616735/datasets/export for details.
DOI: 10.15468/dl.z7tvzy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha curcas",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007392-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5x7aw3
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypsipetes harterti)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 67 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007391-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16508796
title: EPCY data linked to the publication and epcy_paper git repo

description: These archives accompanies the publication "Predictive Gene Discovery with EPCY: A Density-Based Alternative to Differential Expression Analysis", and complements the GitHub repository epcy_paper (DOI: 10.5281/zenodo.16507941).

It includes all materials necessary to reproduce the analyses and figures presented in the paper:



epcy_paper_data_readcount.tar.gz: Read count matrices for the two datasets analyzed bulk (Leucegene3) and single-cell RNA-seq (10X FACS).

epcy_paper_data_design_10X_FACS.tar.gz: Design files and all associate analyses to compare EPCY and limma-trend, MAST, Wilcoxon outputs. 

epcy_paper_data_design_leucegene3.tar.gz: Design files and all associate analyses to compare EPCY and  limma-voom, DESeq2, edgeR outputs.


This dataset supports full reproducibility of the study and facilitates further exploration of predictive gene discovery methods.
DOI: 10.5281/zenodo.16508797
title: EPCY data linked to the publication and epcy_paper git repo

description: These archives accompanies the publication "Predictive Gene Discovery with EPCY: A Density-Based Alternative to Differential Expression Analysis", and complements the GitHub repository epcy_paper (DOI: 10.5281/zenodo.16507941).

It includes all materials necessary to reproduce the analyses and figures presented in the paper:



epcy_paper_data_readcount.tar.gz: Read count matrices for the two datasets analyzed bulk (Leucegene3) and single-cell RNA-seq (10X FACS).

epcy_paper_data_design_10X_FACS.tar.gz: Design files and all associate analyses to compare EPCY and limma-trend, MAST, Wilcoxon outputs. 

epcy_paper_data_design_leucegene3.tar.gz: Design files and all associate analyses to compare EPCY and  limma-voom, DESeq2, edgeR outputs.


This dataset supports full reproducibility of the study and facilitates further exploration of predictive gene discovery methods.