cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5161726.v1
title: The historical reconstruction of distribution of the genus <i>Halecium</i> (Hydrozoa: Haleciidae): a biological signal of ocean warming?

description: The distribution of 130 nominal species of the genus <i>Halecium</i>, based on published records, has been mapped for the first time in a comprehensive set of marine ecoregions, to analyse their distribution. Most <i>Halecium</i> species are found at mid- and high latitudes, with some overlaps in distribution ranges across regions. The species richness of <i>Halecium</i> is strongly related to the latitudinal gradient, with maximal diversity at polar and temperate latitudes. Previous detailed studies in the Mediterranean Sea show that large <i>Halecium</i> species of coldwater affinity have regressed or disappeared in recent years, probably due to global warming. Worldwide, however, the overall species richness of <i>Halecium</i> has not changed along the latitudinal gradient over recent decades, with some changes in species composition at temperate-tropical latitudes in both hemispheres, even though the majority of the species that have not been recorded for more than 50 years are of coldwater affinity. The genus can be considered an indicator for biological responses to climate changes for the Mediterranean Sea, but the available distribution data do not allow extending this possibility to the rest of the world. A focused evaluation on the distribution of <i>Halecium</i> species with the addition of new field data might reinforce the picture stemming from the present analysis.
DOI: 10.6084/m9.figshare.5161729.v1
title: Hydroid diversity of Eilat Bay with the description of a new <i>Zanclea</i> species

description: Eilat Bay is located at the southernmost tip of Israel in the Gulf of Aqaba (Red Sea). The list of hydroids currently known from there includes 51 species, and when extending it to the entire Red Sea, it includes 157 species belonging to 41 families. Nevertheless, the information regarding hydroids in the Gulf of Aqaba, and in particular in Eilat Bay, is not exhaustive. The aim of this work is to improve knowledge of hydroid biodiversity in this area. The specimens collected during the HyDRa project (Hydroid Diversity of the Northern Red Sea) revealed the presence of 27 species, 13 Anthoathecata and 14 Leptothecata, belonging to 17 families and 20 genera. Two families, Cladonematidae and Corynidae, and five genera, <i>Cladonema</i>, <i>Slabberia</i>, <i>Campanularia</i>, <i>Nemalecium</i> and <i>Lafoeina</i>, are new findings for the Red Sea. Furthermore, <i>Nemalecium lighti</i>, <i>Zanclea gallii</i> and the new species <i>Zanclea eilatensis</i> sp. nov. have never before been recorded in the Red Sea. <i>Zanclea eilatensis</i> sp. nov. lives in association with a bryozoan, has a monomorphic colony lacking a perisarc and only has stenoteles in the polyps. The medusa stage has two prominent perradial exumbrellar nematocyst pouches and two tentacles with about 50 cnidophores having long flagella and containing macrobasic euryteles. In the present work, 54% of the species were associated with other organisms, such as hydroids, corals and bryozoans. New ecological data about the <i>Zanclea–</i>scleractinian coral association are documented. The present investigation provides new information about diversity in the Red Sea, and in particular in Eilat Bay. In addition, our data also have significance for Mediterranean and Red Sea biodiversity conservation due to the recent expansion of the Suez Canal and the consequent possible increase in the introduction of nonindigenous species in both directions. http://zoobank.org/urn:lsid:zoobank.org:pub:C9EA7333-B9DF-4888-A643-4D45E6CD31CB
DOI: 10.6084/m9.figshare.5161684
title: Images and Masks

description: Zipped files containing raw perfusion MRI data, processed imaging data, and segmented masks.
DOI: 10.6084/m9.figshare.5161552
title: OpenCitations Corpus provenance data of all the bibliographic resources, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161609
title: Speech–language pathology in paediatric palliative care: A scoping review of role and practice

description: <i>Purpose</i>: Attempts have been made within the literature to clarify the role and scope of speech–language pathologists (SLPs) within paediatric palliative care (PPC). As SLP literature regarding adult/geriatric populations is gaining traction, it is fitting to investigate the role of SLPs in the management of infants and children in end-of-life care. <i>Method</i>: Arksey and O’Malley’s (2005) scoping review method was utilised for searching multiple databases. Two database searches were undertaken. The first located literature in which SLP PPC intervention is specifically addressed. The second search utilised internationally recognised SLP scope of practice areas. Manual searching of reference lists was also utilised. <i>Result</i>: Themes identified included management of communication, feeding, upper-airway and oral health as well as the role of SLPs within a multidisciplinary PPC team. <i>Conclusion</i>: There is acknowledgement that SLPs have a role in PPC. However, there is little information identifying SLP involvement in the diagnosis and management of swallowing, cognition/communication, oral hygiene and upper airway issues. The available literature predominantly relies on limited adult palliative care research and does not address age-specific management approaches across the paediatric life-stage. Given an absence of SLP PPC guidelines, further research is warranted to explicitly define SLP scope of practice within this population.
DOI: 10.6084/m9.figshare.5161549
title: OpenCitations Corpus dataset of all the bibliographic entries, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161609.v1
title: Speech–language pathology in paediatric palliative care: A scoping review of role and practice

description: <i>Purpose</i>: Attempts have been made within the literature to clarify the role and scope of speech–language pathologists (SLPs) within paediatric palliative care (PPC). As SLP literature regarding adult/geriatric populations is gaining traction, it is fitting to investigate the role of SLPs in the management of infants and children in end-of-life care. <i>Method</i>: Arksey and O’Malley’s (2005) scoping review method was utilised for searching multiple databases. Two database searches were undertaken. The first located literature in which SLP PPC intervention is specifically addressed. The second search utilised internationally recognised SLP scope of practice areas. Manual searching of reference lists was also utilised. <i>Result</i>: Themes identified included management of communication, feeding, upper-airway and oral health as well as the role of SLPs within a multidisciplinary PPC team. <i>Conclusion</i>: There is acknowledgement that SLPs have a role in PPC. However, there is little information identifying SLP involvement in the diagnosis and management of swallowing, cognition/communication, oral hygiene and upper airway issues. The available literature predominantly relies on limited adult palliative care research and does not address age-specific management approaches across the paediatric life-stage. Given an absence of SLP PPC guidelines, further research is warranted to explicitly define SLP scope of practice within this population.
DOI: 10.6084/m9.figshare.5161552.v2
title: OpenCitations Corpus provenance data of all the bibliographic resources, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161549.v2
title: OpenCitations Corpus dataset of all the bibliographic entries, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161417
title: Structural insights into the binding mode and conformational changes of BSA induced by bixin and crocin

description: Bixin and crocin are natural apocarotenoids utilized as food colorants and additives in food industries worldwide. For safety assessment, it is necessary to understand the biological interaction of food colorants. In our present study, we report the interaction of two apocarotenoids with bovine serum albumin (BSA) at physiological pH using spectroscopic techniques and <i>in silico</i> tools. The binding constant and the mode of binding sites have been studied. The enthalpic and entropic contribution to the intermolecular binding event was analyzed and it was found that the contribution of hydrogen bonding and hydrophobic interactions was dominant. The adverse temperature dependence in the unusual static quenching is found to be a reasonable consequence of the large activation energy requirement in the binding process, which is required to overcome the fundamental block and is a direct result of the unique microstructure of the binding sites. To confirm the experimental analysis, we investigated the binding patterns using different <i>in silico</i> tools. A combination of molecular docking, molecular dynamics, and toxicity analysis was performed, and the obtained results revealed that both the apocarotenoids had high binding affinity with a binding energy of −5.44 and −5.93 kcal/mol for bixin and crocin, respectively, with no toxic effects and are in accordance with our experimental analysis. The results directly revealed the flexibility of the protein toward bixin and crocin which has a great impact on the interaction. Thus bixin and crocin can guardedly be used as food colorants in food industries.
DOI: 10.6084/m9.figshare.5161552.v1
title: OCC provenance data of all the bibliographic resources, made on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) provenance data about bibliographic resources, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161417.v1
title: Structural insights into the binding mode and conformational changes of BSA induced by bixin and crocin

description: Bixin and crocin are natural apocarotenoids utilized as food colorants and additives in food industries worldwide. For safety assessment, it is necessary to understand the biological interaction of food colorants. In our present study, we report the interaction of two apocarotenoids with bovine serum albumin (BSA) at physiological pH using spectroscopic techniques and <i>in silico</i> tools. The binding constant and the mode of binding sites have been studied. The enthalpic and entropic contribution to the intermolecular binding event was analyzed and it was found that the contribution of hydrogen bonding and hydrophobic interactions was dominant. The adverse temperature dependence in the unusual static quenching is found to be a reasonable consequence of the large activation energy requirement in the binding process, which is required to overcome the fundamental block and is a direct result of the unique microstructure of the binding sites. To confirm the experimental analysis, we investigated the binding patterns using different <i>in silico</i> tools. A combination of molecular docking, molecular dynamics, and toxicity analysis was performed, and the obtained results revealed that both the apocarotenoids had high binding affinity with a binding energy of −5.44 and −5.93 kcal/mol for bixin and crocin, respectively, with no toxic effects and are in accordance with our experimental analysis. The results directly revealed the flexibility of the protein toward bixin and crocin which has a great impact on the interaction. Thus bixin and crocin can guardedly be used as food colorants in food industries.
DOI: 10.6084/m9.figshare.5161549.v1
title: OCC dataset of all the bibliographic entries, made on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) dataset about bibliographic entries, created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-corpus_re<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161342
title: RVC Useful Links and Contact Emails

description: A document with links to RVC online resources and contact information.
DOI: 10.6084/m9.figshare.5161384
title: Adaptive Interaction data

description: Raw data set for Adaptive Interaction study
DOI: 10.6084/m9.figshare.5161390
title: The entire OpenCitations Corpus triplestore data dump, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) triplestore (Blazegraph, https://www.blazegraph.com/, licensed in GPLv2) containing all the data of the corpus, and created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-triplestore<br><br>Please execute "run.sh" for running the triplestore, and use "stop.sh" for stopping it.<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161384.v2
title: Adaptive Interaction data

description: Raw data set for Adaptive Interaction study
DOI: 10.6084/m9.figshare.5161390.v2
title: The entire OpenCitations Corpus triplestore data dump, archived on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) triplestore (Blazegraph, https://www.blazegraph.com/, licensed in GPLv2) containing all the data of the corpus, and created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-triplestore<br><br>Please execute "run.sh" for running the triplestore, and use "stop.sh" for stopping it.<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161342.v2
title: RVC Useful Links and Contact Emails

description: A document with links to RVC online resources and contact information.
DOI: 10.6084/m9.figshare.5161384.v1
title: Adaptive Interaction.sav

description: Raw data set for Adaptive Interaction study
DOI: 10.6084/m9.figshare.5161390.v1
title: The entire OCC triplestore data dump, made on 2017-06-25

description: This archive contains the dump of the OpenCitation Corpus (OCC, http://opencitations.net) triplestore (Blazegraph, https://www.blazegraph.com/, licensed in GPLv2) containing all the data of the corpus, and created regularly every month.<br><br>After unzipping the archive, Disk ARchive (DAR, http://dar.linux.free.fr/, a multi-platform archive tool for managing huge amount of data) is needed for recreating the whole structure. For extracting the DAR archive, please run the command<br><br>dar -x [archive-name]<br><br>Where "[archive-name"] is the name of the DAR file without final package number and extension. E.g.:<br><br>dar -x 2016-09-23-triplestore<br><br>Please execute "run.sh" for running the triplestore, and use "stop.sh" for stopping it.<br><br>For further questions, comments, and suggestions please don't hesitate to contact Silvio Peroni at essepuntato@opencitations.net.
DOI: 10.6084/m9.figshare.5161321
title: Supplementary Material for: Whole-Exome Sequencing Reveals FAT4 Mutations in a Clinically Unrecognizable Patient with Syndromic CAKUT: A Case Report

description: We present the case of a patient of Macedonian origin with unilateral renal agenesis and ureterovesical junction obstruction in combination with further abnormalities including midface hypoplasia, scoliosis as well as camptodactyly of one toe. Whole-exome sequencing analysis revealed compound heterozygous variants in the <i>FAT4</i> gene. Recessive variants in <i>FAT4</i> are a known cause of van Maldergem syndrome (VMS) in which congenital anomalies of the kidney and urinary tract are a less characteristic but common feature. The initial presentation of our patient was not clinically recognizable. However, in view of the molecular findings, the most likely diagnosis is a mild manifestation of VMS. Only very few publications have reported patients with VMS and mutations in <i>FAT4 </i>to date. With this case, we hope to provide further insight into the phenotypic variability of this syndrome.
DOI: 10.6084/m9.figshare.5161321.v1
title: Supplementary Material for: Whole-Exome Sequencing Reveals FAT4 Mutations in a Clinically Unrecognizable Patient with Syndromic CAKUT: A Case Report

description: We present the case of a patient of Macedonian origin with unilateral renal agenesis and ureterovesical junction obstruction in combination with further abnormalities including midface hypoplasia, scoliosis as well as camptodactyly of one toe. Whole-exome sequencing analysis revealed compound heterozygous variants in the <i>FAT4</i> gene. Recessive variants in <i>FAT4</i> are a known cause of van Maldergem syndrome (VMS) in which congenital anomalies of the kidney and urinary tract are a less characteristic but common feature. The initial presentation of our patient was not clinically recognizable. However, in view of the molecular findings, the most likely diagnosis is a mild manifestation of VMS. Only very few publications have reported patients with VMS and mutations in <i>FAT4 </i>to date. With this case, we hope to provide further insight into the phenotypic variability of this syndrome.
DOI: 10.6084/m9.figshare.5161306
title: Supplementary Material for: Limited Role of Random Skin Biopsy in the Diagnosis of Intravascular Lymphoma in Adult Patients with Hemophagocytic Lymphohistiocytosis

description: <strong><em>Background/Aims:</em></strong> This study examined the role of random normal skin biopsy in the diagnosis of intravascular lymphoma (IVL) in adult Western patients with clinically diagnosed hemophagocytic lymphohistiocytosis (HLH). <b><i>Methods:</i></b> In a retrospective chart review study, we analyzed a total of 59 skin biopsies that were performed to diagnose IVL in 21 adult patients with HLH seen at Stanford Hospital between 2004 and 2016. <b><i>Results:</i></b> Out of the 59 skin biopsies, 42 were taken from clinically normal-appearing skin and 17 from clinically abnormal-appearing skin. None of the 59 biopsies revealed a diagnosis of primary or metastatic malignancy, regardless of the malignancy history, clinical presentation, and biopsy and histopathologic characteristics. A review of 8 positive IVL cases at Stanford Hospital including 1 case associated with HLH showed 1 positive diagnosis by a targeted skin biopsy and other positive diagnoses by bone marrow (<i>n</i> = 4), lung (<i>n</i> = 2), brain (<i>n</i> = 2), muscle (<i>n</i> = 1), and nerve (<i>n</i> = 1). <b><i>Conclusion:</i></b> Random skin biopsies have a limited role in diagnosing IVL in adult patients with HLH, in the setting of a single academic institution in the USA. A review of the literature emphasizes the role of a full body skin exam with a selective skin biopsy in these patients.