cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3100657.v1
title: shp.n2eu28.all.RData

description: This RData file contains 3 shapefiles ready to be read in R. <br><br>The shapefiles (R objects) are:<br>Sborders - SpatialLinesDataFrame - borders between EU28 countries.<br>Sn2 - SpatialPolygonsDataFrame - NUTS-2 regions of EU28 countries (NUTS 2010 version).<br>Sneighbors - SpatialPolygons - background layer with neighboring countries.<br><br>All shapefiles are projected in EPSG:3035 (ETRS89 / ETRS-LAEA).<br><br>
DOI: 10.6084/m9.figshare.3100549.v1
title: Mechanics of Presynaptic Transmission

description: <br> A group of phosphotungstic acid based fixatives demonstrated chains of synaptic vesicles in the presynaptic bulb of the motor endplates of the rat diaphragm and produced precipitates in those vesicles. PTA fixatives containing trichloroacetic acid resulted in precipitate in the neurotubules. An hypothesis was offered that the neurotubules were like sausage casings manufactured in the body of the nerve, filled with bound Ach and pushed down the axon by accretion until they reached the membrane wall of the synaptic bulb. The environment of the synaptic bulb is such that the tubule walls are weakened and surface tension forces pinch off vesicles. There is a competition between the breakdown of tubules and their advancement to the presynaptic membrane such that not only vesicles are excytosed but on rare occasions also tubules. This results in the resting stage mini-potentials described by Fatt and Katz. A second form of transmitter release is non-exocytotic. In this case inflow of calcium ions through the axon wall as a result of the AP reversal of the membrane potential cause an osmotic bursting of those vesicles in the vicinity of the flow with expulsion of transmitter which can be seen as streaks running from the interior of burst, now horseshoe-shaped vesicles, which flow across the inter-membrane space and enter into the muscle. Fig. 263 Barrage An attempt is made to unify the various observations into a comprehensive theory of the mechanics of presynaptic transmission.
DOI: 10.6084/m9.figshare.3100525
title: Metodos_ergonomicos_ventajas_desventajas_boceto.pdf

description: Metodologia en Ergonomia<br>
DOI: 10.6084/m9.figshare.3100312
title: A post-Pleistocene calibrated mutation rate from insect museum specimens

description: Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species <i>Neoconocephalus lyristes</i> provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of <i>N. lyristes</i> from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.<br>
DOI: 10.6084/m9.figshare.3100291
title: Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Lanfowl (Aves: Galliformes) - Trinity assembled UCE contigs

description: Contigs assembled with Trinity from target capture raw Illumina reads<br>
DOI: 10.6084/m9.figshare.3100234
title: Datasets and R Code for Narock et al. DSS Paper

description: The Narock et al., 2014 study on Semantic Web Services and Provenance contained an error in the statistical analysis. A subsequent Errata was published correcting the errors. These data and associated R code were used in that study and the creation of the Errata.
DOI: 10.6084/m9.figshare.3100288
title: Urea-induced denaturation of human calcium/calmodulin-dependent protein kinase IV: a combined spectroscopic and MD simulation studies

description: Calcium/calmodulin-dependent protein kinase IV (CaMKIV) is a multifunctional enzyme which belongs to the Ser/Thr kinase family. CaMKIV plays important role in varieties of biological processes such as gene expression regulation, memory consolidation, bone growth, T-cell maturation, sperm motility, regulation of microtubule dynamics, cell-cycle progression, and apoptosis. To measure stability parameters, urea-induced denaturation of CaMKIV was carried out at pH 7.4 and 25°C, using three different probes, namely far-UV CD, near-UV absorption, and tryptophan fluorescence. A coincidence of normalized denaturation curves of these optical properties suggests that urea-induced denaturation is a two-state process. Analysis of these denaturation curves gave values of 4.20 ± 0.12 kcal mol<sup>−1</sup>, 2.95 ± 0.15 M, and 1.42 ± 0.06 kcal mol<sup>−1</sup> M<sup>−1</sup> for (Gibbs free energy change (Δ<i>G</i><sub>D</sub>) in the absence of urea), <i>C</i><sub>m</sub> (molar urea concentration ([urea]) at the midpoint of the denaturation curve), and <i>m</i> (=∂Δ<i>G</i><sub>D</sub>/∂[urea]), respectively. All these experimental observations have been fully supported by 30 ns molecular dynamics simulation studies.
DOI: 10.6084/m9.figshare.3100291.v1
title: Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Lanfowl (Aves: Galliformes) - Trinity assembled UCE contigs

description: Contigs assembled with Trinity from target capture raw Illumina reads<br>
DOI: 10.6084/m9.figshare.3100312.v2
title: A post-Pleistocene calibrated mutation rate from insect museum specimens

description: Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species <i>Neoconocephalus lyristes</i> provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of <i>N. lyristes</i> from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.<br>
DOI: 10.6084/m9.figshare.3100288.v1
title: Urea-induced denaturation of human calcium/calmodulin-dependent protein kinase IV: a combined spectroscopic and MD simulation studies

description: Calcium/calmodulin-dependent protein kinase IV (CaMKIV) is a multifunctional enzyme which belongs to the Ser/Thr kinase family. CaMKIV plays important role in varieties of biological processes such as gene expression regulation, memory consolidation, bone growth, T-cell maturation, sperm motility, regulation of microtubule dynamics, cell-cycle progression, and apoptosis. To measure stability parameters, urea-induced denaturation of CaMKIV was carried out at pH 7.4 and 25°C, using three different probes, namely far-UV CD, near-UV absorption, and tryptophan fluorescence. A coincidence of normalized denaturation curves of these optical properties suggests that urea-induced denaturation is a two-state process. Analysis of these denaturation curves gave values of 4.20 ± 0.12 kcal mol<sup>−1</sup>, 2.95 ± 0.15 M, and 1.42 ± 0.06 kcal mol<sup>−1</sup> M<sup>−1</sup> for (Gibbs free energy change (Δ<i>G</i><sub>D</sub>) in the absence of urea), <i>C</i><sub>m</sub> (molar urea concentration ([urea]) at the midpoint of the denaturation curve), and <i>m</i> (=∂Δ<i>G</i><sub>D</sub>/∂[urea]), respectively. All these experimental observations have been fully supported by 30 ns molecular dynamics simulation studies.
DOI: 10.6084/m9.figshare.3100162
title: Petrography and geochemistry of the Late Cretaceous redbeds in the Gan-Hang Belt, southeast China: implications for provenance, source weathering, and tectonic setting

description: The distinct basin and range tectonics in southeast China were generated in a crustal extension setting during the late Mesozoic. Compared with the adjacent granitoids of the ranges, the redbeds of the basins have not been well characterized. In this article, provenance, source weathering, and tectonic setting of the redbeds are investigated by petrographic and geochemical studies of sandstone samples from the Late Cretaceous Guifeng Group of the Yongchong Basin in the Gan-Hang Belt, southeast China. Detrital grains are commonly subangular to subrounded, poorly sorted, and are rich in lithic fragments. The variable pre-metasomatic Chemical Index of Alternation (CIA* = 62–85), Chemical Index of Weathering (CIW = 70.90–98.76, avg. 85.62), Plagioclase Index of Alteration (PIA = 60.23–98.35, avg. 79.91), and high Index of Compositional Variability (ICV = 0.67–3.08, avg. 1.40) values collectively suggest an overall intermediate degree of chemical weathering and intense physical erosion of the source rocks, but a relatively decreased degree of chemical weathering during the late stage (Lianhe Formation) of the Guifeng Group is observed. Several chemical ratios (e.g. Al<sub>2</sub>O<sub>3</sub>/TiO<sub>2</sub>, La/Th, Cr/Th, Th/Sc, Zr/Sc) also suggest a dominant felsic source nature, significant first-cycle sediment supply, and low sedimentary recycling. Such features are consistent with active extension tectonic setting. Sandstone framework models and geochemical characteristics suggest the provenance is related to passive margin (PM), active continental margin (ACM), and continental island arc (CIA) tectonic settings. Sediment derivation from the Neoproterozoic metamorphic rocks and Silurian–Devonian granites indicates a PM provenance, whereas sediments derived from the Early Cretaceous volcanic-intrusive complexes suggest an ACM and CIA nature. Therefore, the Late Cretaceous redbeds were deposited in a dustpan-like half-graben under the back-arc extension regime when southeast China was possibly influenced by northwestward subduction of the Palaeo-Pacific plate beneath East Asia.
DOI: 10.6084/m9.figshare.3100312.v1
title: A post-Pleistocene calibrated mutation rate from insect museum specimens

description: Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species <i>Neoconocephalus lyristes</i> provides the opportunity to calibrate a post-Pleistocene mutation rate using a known biogeographic event. DNA was extracted from pinned specimens of <i>N. lyristes</i> from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 1.65 %/myr, a value within the range observed in other studies of insect mitochondrial mutation rates.
DOI: 10.6084/m9.figshare.3100129
title: Bubble Collapse near a Fluid-Fluid Interface using the Spectral Element Marker Particle Method with Applications in Bioengineering

description: This repository is a store for the all of the data relating to the article:<br>C. F. Rowlatt and S. J. Lind. Bubble Collapse near a Fluid-Fluid Interface using the Spectral Element Marker Particle Method with Applications in Bioengineering. <i>Submitted to International Journal of Multiphase Flow.</i><i><br></i>The file names clearly illustrate which sections of the article the data is relevant to. The files with extension .zip are raw data files, whilst the files with extension .lpk are Tecplot layout files. <br>The Tecplot layout files were used to produce the plots found in the article. In those files, one can look at a specific quantity at various points throughout the simulation, e.g. see how the colour function changes as the simulation progressed.<br>
DOI: 10.6084/m9.figshare.3100162.v1
title: Petrography and geochemistry of the Late Cretaceous redbeds in the Gan-Hang Belt, southeast China: implications for provenance, source weathering, and tectonic setting

description: The distinct basin and range tectonics in southeast China were generated in a crustal extension setting during the late Mesozoic. Compared with the adjacent granitoids of the ranges, the redbeds of the basins have not been well characterized. In this article, provenance, source weathering, and tectonic setting of the redbeds are investigated by petrographic and geochemical studies of sandstone samples from the Late Cretaceous Guifeng Group of the Yongchong Basin in the Gan-Hang Belt, southeast China. Detrital grains are commonly subangular to subrounded, poorly sorted, and are rich in lithic fragments. The variable pre-metasomatic Chemical Index of Alternation (CIA* = 62–85), Chemical Index of Weathering (CIW = 70.90–98.76, avg. 85.62), Plagioclase Index of Alteration (PIA = 60.23–98.35, avg. 79.91), and high Index of Compositional Variability (ICV = 0.67–3.08, avg. 1.40) values collectively suggest an overall intermediate degree of chemical weathering and intense physical erosion of the source rocks, but a relatively decreased degree of chemical weathering during the late stage (Lianhe Formation) of the Guifeng Group is observed. Several chemical ratios (e.g. Al<sub>2</sub>O<sub>3</sub>/TiO<sub>2</sub>, La/Th, Cr/Th, Th/Sc, Zr/Sc) also suggest a dominant felsic source nature, significant first-cycle sediment supply, and low sedimentary recycling. Such features are consistent with active extension tectonic setting. Sandstone framework models and geochemical characteristics suggest the provenance is related to passive margin (PM), active continental margin (ACM), and continental island arc (CIA) tectonic settings. Sediment derivation from the Neoproterozoic metamorphic rocks and Silurian–Devonian granites indicates a PM provenance, whereas sediments derived from the Early Cretaceous volcanic-intrusive complexes suggest an ACM and CIA nature. Therefore, the Late Cretaceous redbeds were deposited in a dustpan-like half-graben under the back-arc extension regime when southeast China was possibly influenced by northwestward subduction of the Palaeo-Pacific plate beneath East Asia.
DOI: 10.6084/m9.figshare.3100120
title: Speaker Gaze and Trust

description: The data and supplementary materials presented here form the basis of our paper <b>"Direct Speaker Gaze Promotes Trust in Truth-Ambiguous Statements" (<i>H. Kreysa, L. Kessler, & S.R. Schweinberger, 2016, </i></b><b><i><i>PLoS ONE, 11(9), </i>e0162291. doi:10.1371/journal.pone.0162291.</i>).<br></b><br>As described in the paper (downloadable here), 35 student participants indicated by button press whether or not they believed a truth-ambiguous statement, uttered by a speaker in one of 36 short video clips. Importantly, the speaker sometimes looked directly into the camera, at other times she averted her gaze.<b><br><br>1. Data<br>We present four datasets as tab-delimited text:<br><br>1.1. Gaze_RESPrts.txt </b>(responses and RTs for main experiment), with the following variables:<br>- SubjectCode (N = 35)<br>- Video (.avi)<br>- Item (N = 36)<br>- RT from response screen in ms<br>- Response (yes/no)<br>- Orientation (direct gaze / averted right / averted left)<br>- debrief (mention of gaze direction in debrief questionnnaire)<br><b><br>1.2 Audioonly_RESPrts.txt </b>(responses and RTs for control experiment), with the following variables:<br>- SubjectCode (N = 37)<br>- Audio (.wav)<br>- Item (N = 36)<br>- RT from response screen in ms<br>- Response (yes/no)<br>- Orientation_original (direct gaze / averted)<b><br><br>1.3 Gaze_ratings.txt </b>(post-experimental ratings of the speaker's attributes, main experiment), with the following variables:<br>- SubjectCode (N = 35)<br>- Attribute (6 levels)<br>- Rating-recoded (1: lowest - 6: highest)<br>- Response_time<br>- Rating_trial (6 per participant)<br>- Num.yes (number of yes-responses in main experiment per participant, out of 36)<b><br><br>1.4 Gaze_fixations.txt</b> (total fixation time to each AoI during video presentation), with the following variables:<br>- SubjectCode (N = 35)<br>- Video (.avi)<br>- AoI (Area of Interest assigned in SMI BeGaze, see attached example image "AOIs.bmp": eyes, bottomright, bottomleft, topright, topleft, whitespace)<br>- Fixtime (total fixation time per region)<br>Eye movements were recorded using an SMI iViewX Hi-Speed 500 tracker, and fixation events were extracted for each participant using SMI BeGaze (v. 3.4.52).<br><br><b>2. Stimulus examples</b><br>Two videos, one with direct gaze (1_Hund_direct.avi) and one with with averted gaze (mirrored to create right-averted gaze: 1_Hund_right.avi)<br><b><br>3. Further Material</b><br>- <b>AOIs.bmp</b>: image showing assignment of areas of interest on the videos<br>- <b>HK_Poster_gaze&trust_PPRU2015.pdf</b>: poster presented at the XIth Workshop of the Person Perception Research Unit, Jena, Germany (Workshop XI (April, 9-10, 2015): “Human Communication: From Person Perception to Social Action”)<br><br>Please email me if you require any further information (helene.kreysa@uni-jena.de).<br><br>
DOI: 10.6084/m9.figshare.3100234.v1
title: Datasets and R Code for Narock et al. DSS Paper

description: The Narock et al., 2014 study on Semantic Web Services and Provenance contained an error in the statistical analysis. A subsequent Errata was published correcting the errors. These data and associated R code were used in that study and the creation of the Errata.
DOI: 10.6084/m9.figshare.3100111
title: missing_data_raw.zip

description: This archive contains data needed to reconstruct the missing data in Eurostat 1-year population structures and deaths data at NUTS-2 regions level for the period 2003-2013.<br><br>Germany (DE): DED4, DED5, 2003-2010, pop & deaths<br>Denmark (DK): DE01, DE02, DE03, DE 03, DE05, pop & deaths<br>Slovenia (SI): SI01,SI02, 2003-2004, pop
DOI: 10.6084/m9.figshare.3100129.v1
title: Bubble Collapse near a Fluid-Fluid Interface using the Spectral Element Marker Particle Method with Applications in Bioengineering

description: This repository is a store for the all of the data relating to the article:<br>C. F. Rowlatt and S. J. Lind. Bubble Collapse near a Fluid-Fluid Interface using the Spectral Element Marker Particle Method with Applications in Bioengineering. <i>Submitted to International Journal of Multiphase Flow.</i><i><br></i>The file names clearly illustrate which sections of the article the data is relevant to. The files with extension .zip are raw data files, whilst the files with extension .lpk are Tecplot layout files. <br>The Tecplot layout files were used to produce the plots found in the article. In those files, one can look at a specific quantity at various points throughout the simulation, e.g. see how the colour function changes as the simulation progressed.<br>The source code used to produce the raw data will be made available on GitHub in due course.
DOI: 10.6084/m9.figshare.3099829
title: Data_Crocetti et al._plosone_The Dynamic Interplay among Maternal Empathy, Quality of Mother-Adolescent Relationship, and Adolescent Antisocial Behaviors.sav

description: Data used in the publication:Crocetti, E., Moscatelli, S., Van der Graaff, J., Keijsers, L., van Lier, P., Koot, H. M., Rubini, M., Meeus, W., & Branje, S. (2016). The dynamic interplay among maternal empathy, quality of mother-adolescent relationship, and adolescent antisocial behaviors: New insights from a six-wave longitudinal multi-informant study. PlosOne.
DOI: 10.6084/m9.figshare.3100108
title: Agricultural Journals and Societies of India

description: List of Journals and Scientific Societies functioning in at ICAR Research Institutes.<br><br>Published at http://journals.uic.edu/ojs/index.php/fm/article/view/2488/2238<br>
DOI: 10.6084/m9.figshare.3100111.v2
title: missing_data_raw.zip

description: This archive contains data needed to reconstruct the missing data in Eurostat 1-year population structures and deaths data at NUTS-2 regions level for the period 2003-2013.<br><br>Germany (DE): DED4, DED5, 2003-2010, pop & deaths<br>Denmark (DK): DE01, DE02, DE03, DE 03, DE05, pop & deaths<br>Slovenia (SI): SI01,SI02, 2003-2004, pop
DOI: 10.6084/m9.figshare.3100111.v1
title: missing_data_raw.zip

description: This archive contains data needed to reconstruct the missing data in Eurostat 1-year population structures and deaths data at NUTS-2 regions level for the period 2003-2013.<br><br>Germany (DE): DED4, DED5, 2003-2010, pop & deaths<br>Denmark (DK): DE01, DE02, DE03, DE 03, DE05, pop & deaths<br>Slovenia (SI): SI01,SI02, 2003-2004, pop
DOI: 10.6084/m9.figshare.3099829.v1
title: Data_Crocetti et al._plosone_The Dynamic Interplay among Maternal Empathy, Quality of Mother-Adolescent Relationship, and Adolescent Antisocial Behaviors.sav

description: Data used in the publication:Crocetti, E., Moscatelli, S., Van der Graaff, J., Keijsers, L., van Lier, P., Koot, H. M., Rubini, M., Meeus, W., & Branje, S. (2016). The dynamic interplay among maternal empathy, quality of mother-adolescent relationship, and adolescent antisocial behaviors: New insights from a six-wave longitudinal multi-informant study. PlosOne.
DOI: 10.6084/m9.figshare.3100108.v1
title: Journals of the Societies Functioning in ICAR

description: List of Journals and Scientific Societies functioning in at ICAR Research Institutes.<br><br>Published at http://journals.uic.edu/ojs/index.php/fm/article/view/2488/2238<br>