cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25625/9obivl/x0wuag
title: test_taggerfactory.py
DOI: 10.25625/9obivl/pwctdl
title: test_sparqlreader.py
DOI: 10.25625/9obivl/71gohc
title: test_fixtures.py
DOI: 10.25625/9obivl/17akjv
title: test_dumpreader.py
DOI: 10.25625/9obivl/u9knry
title: test_wikidatagraph.py
DOI: 10.25625/9obivl/0zlnpv
title: test_classifier.py
DOI: 10.25625/9obivl/hb6tma
title: test_wditem.py
DOI: 10.25625/9obivl/pio9os
title: sample_wikidata_items.npz
DOI: 10.5281/zenodo.17164105
title: Fictional Forensic Scene (FFS) : Part2 (Th_0021-0040 scenes)

description: Fictional Forensic Scene (FFS) Dataset description.

 This dataset is derived from fictional forensic scenes (crime scenes and accident scenes, mainly inside). The aim is to be as close to reality as possible. As such, some scenes may be shocking to an uninformed audience (some mannequins have a physical appearance similar to bodies found at real crime scenes).  This dataset is licensed under CC BY-NC-SA 4.0.

The data has been classified and named in a uniform manner. All crime scenes are named in the format “th_X,” where “X” represents the scene number. The data is organized as follows: a “description” folder containing two spreadsheets describing the scenes in English and French, an ‘img’ folder containing documentation photographs for each scene, an “IPC” “ (Inventory of Evidence) containing spreadsheets listing the evidence from each scene (in English and French), a ‘pano’ folder containing black and white panoramic images, and a ”scan" folder containing data from the laser scanner (point clouds and panoramic images, in black and white and color). The scenes are available in zip packages (th_0001-th_0020, th_0021-40, th_0041-0060, th_0061-0080, th_0081-100). When new scenes are acquired, they will be integrated into linked repositories. Currently, 100 scenes are available (Part1, Part2, Part3, Part4, Part5).

For more information about the data, you can consult the readme file.

Text data is provided in two languages (extension _ENG for English, _FR for French).
DOI: 10.5281/zenodo.18623077
title: Fictional Forensic Scene (FFS) : Part2 (Th_0021-0040 scenes)

description: Fictional Forensic Scene (FFS) Dataset description.

 This dataset is derived from fictional forensic scenes (crime scenes and accident scenes, mainly inside). The aim is to be as close to reality as possible. As such, some scenes may be shocking to an uninformed audience (some mannequins have a physical appearance similar to bodies found at real crime scenes).  This dataset is licensed under CC BY-NC-SA 4.0.

The data has been classified and named in a uniform manner. All crime scenes are named in the format “th_X,” where “X” represents the scene number. The data is organized as follows: a “description” folder containing two spreadsheets describing the scenes in English and French, an ‘img’ folder containing documentation photographs for each scene, an “IPC” “ (Inventory of Evidence) containing spreadsheets listing the evidence from each scene (in English and French), a ‘pano’ folder containing black and white panoramic images, and a ”scan" folder containing data from the laser scanner (point clouds and panoramic images, in black and white and color). The scenes are available in zip packages (th_0001-th_0020, th_0021-40, th_0041-0060, th_0061-0080, th_0081-100). When new scenes are acquired, they will be integrated into linked repositories. Currently, 100 scenes are available (Part1, Part2, Part3, Part4, Part5).

For more information about the data, you can consult the readme file.

Text data is provided in two languages (extension _ENG for English, _FR for French).
DOI: 10.25625/9obivl/0pdk3q
title: sample_wikidata_items.unsorted.tsv
DOI: 10.25625/9obivl/azubme
title: Q62653454.json
DOI: 10.25625/9obivl/kvh8op
title: indexing_profile.json
DOI: 10.25625/9obivl/qnj6ip
title: sample_wikidata_items.pgrank.npy
DOI: 10.25625/9obivl/g0t1kj
title: sample_wikidata_items.tsv
DOI: 10.25625/9obivl/hznehx
title: Q30264236.json
DOI: 10.25625/9obivl/rruhhc
title: short_stream.json.bz2
DOI: 10.25625/9obivl/khqvwt
title: all_items_profile.json
DOI: 10.25625/9obivl/rpvg9f
title: get.sh
DOI: 10.25625/9obivl/0eezft
title: sample_bow.pkl
DOI: 10.25625/9obivl/aocb7z
title: five-affiliations.ttl
DOI: 10.25625/9obivl/hshki4
title: requests_cache.sqlite
DOI: 10.25625/9obivl/jsg6ua
title: sample_wikidata_items.json.bz2
DOI: 10.15468/dl.538bdm
title: Occurrence Download

description: A dataset containing 10067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachydiplax",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10067 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004105-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/9obivl/oektzm
title: Q51783269.json
DOI: 10.25625/9obivl/2dstl4
title: Q31.json
DOI: 10.25625/9obivl/eziq3t
title: wbgetentities_response.json
DOI: 10.25625/9obivl/bdls41
title: dummy_sparql_query_response.json
DOI: 10.5281/zenodo.15253151
title: Bimodal genomic approach predicting Semaphorin 7A (SEMA7A) as prognostic biomarker in adrenocortical carcinoma

description: Bimodal Gene Detection using Gaussian Mixture Modeling in Tumor Expression Data.

 

Description:

This project provides an R-based analytical pipeline designed to identify genes with bimodal expression patterns across tumor samples. Bimodal expression may indicate tumor heterogeneity, subtype-specific gene regulation, or clinically relevant expression shifts.

The pipeline uses:





Gaussian Mixture Modeling (GMM) to fit two-component distributions for each gene




Hartigan’s Dip Test to test for non-unimodality



 

Required R Packages:



readxl

tidyverse

diptest

nor1mix


 

You can install the required packages in R using:




install.packages(c("readxl", "tidyverse", "diptest", "nor1mix"))




 

How to Run: Ensure the expression matrix file named Gene_Expression.csv is placed in the same directory as the script. Then run:




Rscript code.R




This will generate the ranked list and plots for downstream analysis or interpretation.
DOI: 10.5281/zenodo.15253150
title: Bimodal genomic approach predicting Semaphorin 7A (SEMA7A) as prognostic biomarker in adrenocortical carcinoma

description: Bimodal Gene Detection using Gaussian Mixture Modeling in Tumor Expression Data.

 

Description:

This project provides an R-based analytical pipeline designed to identify genes with bimodal expression patterns across tumor samples. Bimodal expression may indicate tumor heterogeneity, subtype-specific gene regulation, or clinically relevant expression shifts.

The pipeline uses:





Gaussian Mixture Modeling (GMM) to fit two-component distributions for each gene




Hartigan’s Dip Test to test for non-unimodality



 

Required R Packages:



readxl

tidyverse

diptest

nor1mix


 

You can install the required packages in R using:




install.packages(c("readxl", "tidyverse", "diptest", "nor1mix"))




 

How to Run: Ensure the expression matrix file named Gene_Expression.csv is placed in the same directory as the script. Then run:




Rscript code.R




This will generate the ranked list and plots for downstream analysis or interpretation.
DOI: 10.3535/dcb-svj-j2n
title: †Eucytheridea rostrata Bassiouni, 1962

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/151-bm7-93n
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.hf5yut
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis mossambicus",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019268-250811113504898/datasets/export for details.
DOI: 10.3535/cqx-xz9-s8d
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y2y-7qn-qrq
title: †Pseudorbitoides trechmanni Douvillé, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d4g-brt-rmn
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eg9-5gv-4r4
title: Steraechmella buski Lagaaij, 1952

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29q-m0j-qdh
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vqx-dpk-n99
title: Arthropoda

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljm-xn0-8md
title: Diplacanthopoma

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x3t-66g-bhe
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/37b-n05-q7y
title: †Pseudorbitoides trechmanni Douvillé, 1922

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5l0-az6-s1a
title: Carcharodon

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ea8-77b-86m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6g9-crr-kh5
title: Tyto Billberg, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/stb-wx1-g71
title: Balclutha Kirkaldy, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3bs-kjk-tsr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vk3-krh-48q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ry-gj6-56r
title: †Petrophylliella javana (Gerth, 1921)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4q9-9ef-2td
title: Bos taurus primigenius Bojanus, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x3p-7re-3be
title: Fungia Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4k0-nl4-zw3
title: †Taxogyra Wells, 1937

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g4d-7ep-2wt
title: †Monocraterion Chakrabarti, 1990

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ga-9eh-m21
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k7v-557-n4p
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/alw-4fq-q8k
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sjz-584-4x9
title: Cetorhinidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tjx-pme-5dr
title: Hoplobrotula

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n3x-vef-vhy
title: Isis Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qr4-4rw-c05
title: †Fungophyllia monstrosa Gerth, 1923

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/13s-enq-fn0
title: †Nummulites crasseornatus (Henrici, 1934)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hly-qr2-x3w
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0d7-hm0-vb6
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s4r-m57-3by
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4kf-7sg-h06
title: Cytherella (Cytherella) Jones, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sxd-dmz-xlj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mj9-fxr-4g2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p2w-xhf-57x
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z8f-cmr-alc
title: Acrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zk7-v7v-1pa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fwb-9bv-2ne
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hal-sfc-tq9
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kg2-bxy-wy0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qwk-sfp-wmf
title: Cupuladria Canu & Bassler, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tf5-mrk-dr3
title: Bryophyta Schimp.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/283-et0-3cd
title: Chorizopora brongniartii (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6e2-7nw-rce
title: Dendrobeania Levinsen, 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bkk-pmk-v96
title: †Cellaria reussi d'Orbigny, 1851

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zr5-fz5-fsl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fn3-2w3-br5
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9sn4pz
title: Occurrence Download

description: A dataset containing 516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ameiurus melas (Rafinesque, 1820), Axis axis (Erxleben, 1777), Callosciurus finlaysonii (Horsfield, 1823), Celastrus orbiculatus Thunb., Channa argus (Cantor, 1842), Faxonius rusticus (Girard, 1852), Gambusia affinis (Baird & Girard, 1853), Gambusia holbrooki Girard, 1859, Hakea sericea Schrad. & J.C.Wendl., Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lampropeltis getula (Blainville, 1835), Limnoperna fortunei (Dunker, 1857), Morone americana (Gmelin, 1789), Pycnonotus cafer (Linnaeus, 1766), Rugulopteryx okamurae (E.Y.Dawson) I.K.Hwang, W.J.Lee & H.S.Kim, 2009, Solenopsis geminata (Fabricius, 1804), Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Wasmannia auropunctata (Roger, 1863))",
 "HasCoordinate is true",
 "Country is Belgium",
 "Year is greater than or equal to 2019"
 ]
}

 The dataset includes 516 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003508-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/fame-c109-1918
title: First African Methodist Episcopal Church of Los Angeles Collection

description: The First African Methodist Episcopal Church of Los Angeles Collection currently consists of approximately 400 sermons given by Reverend Cecil “Chip” Murray. These recordings capture the evolution of Reverend Murray’s thinking during his time leading the church in addition to the messages he gave his congregation after pivotal moments in U.S. life, such as the acquittal of the LAPD officers captured on video beating Rodney King. These sermons, delivered with passion, great humor, and insights into the structural inequalities that led to events like the 1992 L.A. civil unrest, are a record of important events interpreted through the lens of Rev. Murray’s socially engaged African-American Christianity. Originally captured on VHS, a selection of these sermons have been digitized by the USC Digital Repository and uploaded and transcribed for optimum access in the Digital Library. Founded by Biddy Mason in 1872, the First African Methodist Episcopal Church of Los Angeles (also known as the First AME, or FAME Church) is the oldest African-American church in Southern California. During his 27 years as pastor, Reverend Murray transformed a small congregation of 250 people into an 18,000-member institution that brought jobs, housing, and corporate investment into South L.A. neighborhoods. After the 1992 civil unrest, the economic development arm of the church brought more than $400 million in investments to L.A.’s minority and low-income neighborhoods. After retiring from his ministry in 2004, Reverend Murray was named a senior fellow of the USC Center for Religion and Civic Culture (CRCC). He chairs the USC Cecil Murray Center for Community Engagement, a leadership training and capacity-building organization that equips clergy and lay leaders to guide their communities into full partnership in the development of underserved neighborhoods in Greater Los Angeles. Materials from the First African Methodist Episcopal Church Collection are part of the L. A. as Subject Community Histories Digitization Project. Thanks to generous support from the National Endowment for the Humanities (https://www.neh.gov/), the USC Libraries are digitizing this collection for public access.
DOI: 10.25549/fame-c109-1940
title: Murray, The finalizer confusion rises with the sun, 1998-03-15 8am

description: The finalizer confusion rises with the sun, a sermon given by Cecil "Chip" Murray at First African Methodist Episcopal Church of Los Angeles (FAME) (First AME Church), 2270 South Harvard Boulevard, Los Angeles, California, USA, on 1998 March 15 8am.
DOI: 10.25549/fame-c109-1375
title: First African Methodist Episcopal Church of Los Angeles Collection

description: The First African Methodist Episcopal Church of Los Angeles Collection currently consists of approximately 400 sermons given by Reverend Cecil “Chip” Murray. These recordings capture the evolution of Reverend Murray’s thinking during his time leading the church in addition to the messages he gave his congregation after pivotal moments in U.S. life, such as the acquittal of the LAPD officers captured on video beating Rodney King. These sermons, delivered with passion, great humor, and insights into the structural inequalities that led to events like the 1992 L.A. civil unrest, are a record of important events interpreted through the lens of Rev. Murray’s socially engaged African-American Christianity. Originally captured on VHS, a selection of these sermons have been digitized by the USC Digital Repository and uploaded and transcribed for optimum access in the Digital Library. Founded by Biddy Mason in 1872, the First African Methodist Episcopal Church of Los Angeles (also known as the First AME, or FAME Church) is the oldest African-American church in Southern California. During his 27 years as pastor, Reverend Murray transformed a small congregation of 250 people into an 18,000-member institution that brought jobs, housing, and corporate investment into South L.A. neighborhoods. After the 1992 civil unrest, the economic development arm of the church brought more than $400 million in investments to L.A.’s minority and low-income neighborhoods. After retiring from his ministry in 2004, Reverend Murray was named a senior fellow of the USC Center for Religion and Civic Culture (CRCC). He chairs the USC Cecil Murray Center for Community Engagement, a leadership training and capacity-building organization that equips clergy and lay leaders to guide their communities into full partnership in the development of underserved neighborhoods in Greater Los Angeles. Materials from the First African Methodist Episcopal Church Collection are part of the L. A. as Subject Community Histories Digitization Project. Thanks to generous support from the National Endowment for the Humanities (https://www.neh.gov/), the USC Libraries are digitizing this collection for public access.
DOI: 10.25549/fame-c109-1391
title: First African Methodist Episcopal Church of Los Angeles Collection

description: The First African Methodist Episcopal Church of Los Angeles Collection currently consists of approximately 400 sermons given by Reverend Cecil “Chip” Murray. These recordings capture the evolution of Reverend Murray’s thinking during his time leading the church in addition to the messages he gave his congregation after pivotal moments in U.S. life, such as the acquittal of the LAPD officers captured on video beating Rodney King. These sermons, delivered with passion, great humor, and insights into the structural inequalities that led to events like the 1992 L.A. civil unrest, are a record of important events interpreted through the lens of Rev. Murray’s socially engaged African-American Christianity. Originally captured on VHS, a selection of these sermons have been digitized by the USC Digital Repository and uploaded and transcribed for optimum access in the Digital Library. Founded by Biddy Mason in 1872, the First African Methodist Episcopal Church of Los Angeles (also known as the First AME, or FAME Church) is the oldest African-American church in Southern California. During his 27 years as pastor, Reverend Murray transformed a small congregation of 250 people into an 18,000-member institution that brought jobs, housing, and corporate investment into South L.A. neighborhoods. After the 1992 civil unrest, the economic development arm of the church brought more than $400 million in investments to L.A.’s minority and low-income neighborhoods. After retiring from his ministry in 2004, Reverend Murray was named a senior fellow of the USC Center for Religion and Civic Culture (CRCC). He chairs the USC Cecil Murray Center for Community Engagement, a leadership training and capacity-building organization that equips clergy and lay leaders to guide their communities into full partnership in the development of underserved neighborhoods in Greater Los Angeles. Materials from the First African Methodist Episcopal Church Collection are part of the L. A. as Subject Community Histories Digitization Project. Thanks to generous support from the National Endowment for the Humanities (https://www.neh.gov/), the USC Libraries are digitizing this collection for public access.