cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11661999.v1
title: Middle–late permian I-type granitoids from the Diaobingshan region in the northern margin of the North China Craton: insight into southward subduction of the Paleo–Asian Ocean

description: An integrated study of the petrology, zircon U–Pb geochronology, whole–rock geochemistry, and <i>in situ</i> zircon Hf isotopic compositions of middle–late Permian granitoids from the Diaobingshan region in the northern margin of the North China Craton (NCC) has been implemented, with the aim of investigating their geochronological framework, petrogenesis, and tectonic significance. The studied granitoids are widely distributed on the southern side of the Changchun–Yanji suture zone and comprise mainly monzogranite and syenogranite, with minor quartz monzonite. New zircon U–Pb data measured by laser ablation inductively coupled plasma mass spectrometry (LA–ICP–MS) yield emplacement ages of 262–256 Ma, reflecting middle–late Permian magmatism. Geochemically, the rocks contain 60.53–73.33 wt.% SiO<sub>2</sub>, 12.60–18.35 wt.% Al<sub>2</sub>O<sub>3</sub>, 3.50–8.10 wt.% K<sub>2</sub>O, 0.18–0.91 wt.% TiO<sub>2</sub>, and 0.22–1.01 wt.% MgO, and exhibit weakly peraluminous (A/CNK = 0.86–1.01) and high-K calc–alkaline and shoshonitic characteristics, indicating I-type granite affinities. They are also characterized by low Sr and high Yb contents, reflecting low-pressure magma source conditions with residual plagioclase (i.e. amphibolite facies). These granitoids also exhibit geochemical characteristics typical of arc–type magmatic rocks, with enrichment in large ion lithophile elements (LILEs; e.g. Rb, Ba, and K) and light rare earth elements (LREEs), and depletion in high field strength elements (HFSEs; e.g. Nb, Ta, Ti, and P) and heavy rare earth elements (HREEs), indicating that they were formed in a subduction-related setting. Moreover, magmatic zircons from the studied rocks have relatively homogeneous Hf isotopic compositions (ε<sub>Hf</sub>(t) = – 1.4 to +15.1) and corresponding two–stage model (T<sub>DM2</sub>) ages of 1839–348 Ma, indicating that they were generated by partial melting of Paleoproterozoic–Phanerozoic accreted lower crust, with minor contributions of ancient crustal materials. Their geochemical characteristics and specific lithological assemblage, together with the temporal–spatial distribution of Permian granitic magmatism, indicate that the formation of middle–late Permian granitoids in the northern margin of the NCC was related to southward Paleo–Asian oceanic subduction. Data from this and previous studies lead us to favour a double-sided, early–late Permian subduction model, with the Paleo–Asian Ocean closing after the late Permian.
DOI: 10.6084/m9.figshare.21099136.v1
title: Additional file 3 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 3: Table S3. The basic information of AP2/ERF gene family in A. eriantha and A. chinensis.
DOI: 10.6084/m9.figshare.21099139.v1
title: Additional file 4 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 4: Table S4. The gene structures of AP2/ERF gene family in A. eriantha and A. chinensis.
DOI: 10.6084/m9.figshare.21099127
title: Additional file 12 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 12: Table S10. Primer sequences of AP2/ERF genes in A. eriantha for qRT-PCR.
DOI: 10.6084/m9.figshare.21099130.v1
title: Additional file 1 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 1: Table S1. The protein sequences and coding sequences of the AP2/ERF gene family in A. eriantha and A. chinensis.
DOI: 10.6084/m9.figshare.21099139
title: Additional file 4 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 4: Table S4. The gene structures of AP2/ERF gene family in A. eriantha and A. chinensis.
DOI: 10.6084/m9.figshare.7991999
title: Genome annotation for Argopecten irradians irradians and Argopecten irradians concentricus

description: Genome annotation for Argopecten irradians irradians and Argopecten irradians concentricus
DOI: 10.6084/m9.figshare.21099124
title: Additional file 11 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 11: Table S9. The TPM values of different flower developments in RNA-seq of A. eriantha.
DOI: 10.6084/m9.figshare.21099133
title: Additional file 2 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 2: Table S2. The detailed information of exited AP2 domain in listed AP2/ERF genes in this study.
DOI: 10.6084/m9.figshare.21099121
title: Additional file 10 of Genome-wide identification and characterization of AP2/ERF gene superfamily during flower development in Actinidia eriantha

description: Additional file 10: Table S8. Summary of the raw sequencing data and mapping rate of A. eriantha.
DOI: 10.6084/m9.figshare.7992050
title: Additional file 1: of Activation of GPR40 produces mechanical antiallodynia via the spinal glial interleukin-10/β-endorphin pathway

description: Figure S1. Expression of GPR40 in the spinal dorsal horn of neuropathic rats induced by L5/L6 spinal nerve ligation. Frozen sections were obtained from spinal lumbar enlargements from neuropathic rats approximately 2 weeks after surgery. Immunofluorescence was stained with the GPR40 antibody and photomicrographs were taken from the entire spinal cord section (A, 500 μm). B. The immunolabeled surface areas of GPR40 from the spinal dorsal horn laminae I-V indicated in white lines were quantified using the ImageJ program. Data are presented as mean ± SEM (N = 11~12 per group). * P &lt; 0.05, vs saline group; analyzed by unpaired and two-tailed Student t-test. (ZIP 300 kb)
DOI: 10.6084/m9.figshare.7992050.v1
title: Additional file 1: of Activation of GPR40 produces mechanical antiallodynia via the spinal glial interleukin-10/β-endorphin pathway

description: Figure S1. Expression of GPR40 in the spinal dorsal horn of neuropathic rats induced by L5/L6 spinal nerve ligation. Frozen sections were obtained from spinal lumbar enlargements from neuropathic rats approximately 2 weeks after surgery. Immunofluorescence was stained with the GPR40 antibody and photomicrographs were taken from the entire spinal cord section (A, 500 μm). B. The immunolabeled surface areas of GPR40 from the spinal dorsal horn laminae I-V indicated in white lines were quantified using the ImageJ program. Data are presented as mean ± SEM (N = 11~12 per group). * P &lt; 0.05, vs saline group; analyzed by unpaired and two-tailed Student t-test. (ZIP 300 kb)
DOI: 10.6084/m9.figshare.6943475.v1
title: Clinical evaluation of a substitute of HLA-B*58:01 in different Chinese ethnic groups

description: Abstract The goal of this research was to investigate the linkage disequilibrium between rs9263726 and HLA-B*58:01 in different Chinese ethnic groups (Han, Tibet, and Hui) and to study the feasibility of rs9263726 replacing HLA-B*58:01 as an efficient indicator of potential allopurinol hypersensitivity syndrome. In this study, rs9263726 and HLA-B*58:01 were detected in all samples. For samples of individuals whose rs9263726 genotypes were not consistent with HLA-B*58:01, we did high-resolution typing of HLA-B gene to further confirm the correlation of rs9263726 genotype and special HLA-B alleles. We confirmed that the linkage disequilibrium between rs9263726 and HLA-B*58:01 was more significant in the Han ethnic group (r2=0.886, D’=1.0) than in the Tibet and Hui ethnic groups (for Tibetan, r2=0.606, D’=0.866; for Hui, r2=0.622, D’=0.924). For Han Chinese, samples with the GG genotype of rs9263726 did not carry HLA-B*58:01, while AA genotype samples were homozygous carriers of HLA-B*58:01. However, GA genotype samples of rs9263726 required a more sophisticated HLA-B genotyping assay before it was possible to identify whether they were HLA-B*58:01 carriers or not. For Tibetan and Hui, the linkage disequilibrium between rs9263726 and HLA-B*58:01 was not significant. Therefore, rs9263726 cannot replace HLA-B*58:01 in these two groups.
DOI: 10.6084/m9.figshare.6943475
title: Clinical evaluation of a substitute of HLA-B*58:01 in different Chinese ethnic groups

description: Abstract The goal of this research was to investigate the linkage disequilibrium between rs9263726 and HLA-B*58:01 in different Chinese ethnic groups (Han, Tibet, and Hui) and to study the feasibility of rs9263726 replacing HLA-B*58:01 as an efficient indicator of potential allopurinol hypersensitivity syndrome. In this study, rs9263726 and HLA-B*58:01 were detected in all samples. For samples of individuals whose rs9263726 genotypes were not consistent with HLA-B*58:01, we did high-resolution typing of HLA-B gene to further confirm the correlation of rs9263726 genotype and special HLA-B alleles. We confirmed that the linkage disequilibrium between rs9263726 and HLA-B*58:01 was more significant in the Han ethnic group (r2=0.886, D’=1.0) than in the Tibet and Hui ethnic groups (for Tibetan, r2=0.606, D’=0.866; for Hui, r2=0.622, D’=0.924). For Han Chinese, samples with the GG genotype of rs9263726 did not carry HLA-B*58:01, while AA genotype samples were homozygous carriers of HLA-B*58:01. However, GA genotype samples of rs9263726 required a more sophisticated HLA-B genotyping assay before it was possible to identify whether they were HLA-B*58:01 carriers or not. For Tibetan and Hui, the linkage disequilibrium between rs9263726 and HLA-B*58:01 was not significant. Therefore, rs9263726 cannot replace HLA-B*58:01 in these two groups.
DOI: 10.6084/m9.figshare.7992056
title: Additional file 2: of Activation of GPR40 produces mechanical antiallodynia via the spinal glial interleukin-10/β-endorphin pathway

description: Figure S2. Stimulatory effect of intrathecal injection of GW9508 on IL-10 expression in the spinal dorsal horn of neuropathic rats induced by L5/L6 spinal nerve ligation. The spinal lumbar enlargements were obtained 1 hour after intrathecal injection of saline (10 μl) or GW9508 (30 μg). For the gene and protein analysis study, expression of the IL-10 gene (A) and protein (B) levels were determined using qRT-PCR and a specific fluorescent immunoassay kit, respectively. For the immunostaining study, the spinal lumbar enlargements were frozen. Immunofluorescence was stained with the IL-10 antibody and photomicrographs were taken from the entire spinal cord section. (C, D, 500 μm). E. The immunolabeled surface areas of IL-10 from the spinal dorsal horn laminae I-V indicated in white lines were quantified using the ImageJ program. Data are presented as mean ± SEM (N = 5~6 per group). * P &lt; 0.05, vs saline group; analyzed by unpaired and two-tailed Student t-test. (ZIP 447 kb)
DOI: 10.6084/m9.figshare.7992056.v1
title: Additional file 2: of Activation of GPR40 produces mechanical antiallodynia via the spinal glial interleukin-10/β-endorphin pathway

description: Figure S2. Stimulatory effect of intrathecal injection of GW9508 on IL-10 expression in the spinal dorsal horn of neuropathic rats induced by L5/L6 spinal nerve ligation. The spinal lumbar enlargements were obtained 1 hour after intrathecal injection of saline (10 μl) or GW9508 (30 μg). For the gene and protein analysis study, expression of the IL-10 gene (A) and protein (B) levels were determined using qRT-PCR and a specific fluorescent immunoassay kit, respectively. For the immunostaining study, the spinal lumbar enlargements were frozen. Immunofluorescence was stained with the IL-10 antibody and photomicrographs were taken from the entire spinal cord section. (C, D, 500 μm). E. The immunolabeled surface areas of IL-10 from the spinal dorsal horn laminae I-V indicated in white lines were quantified using the ImageJ program. Data are presented as mean ± SEM (N = 5~6 per group). * P &lt; 0.05, vs saline group; analyzed by unpaired and two-tailed Student t-test. (ZIP 447 kb)
DOI: 10.6084/m9.figshare.7992065
title: Additional file 3: of Activation of GPR40 produces mechanical antiallodynia via the spinal glial interleukin-10/β-endorphin pathway

description: Figure S3. Stimulatory effect of intrathecal injection of GW9508 on β-endorphin expression in the spinal dorsal horn of neuropathic rats induced by L5/L6 spinal nerve ligation. The spinal lumbar enlargements were obtained 1 hour after intrathecal injection of saline (10 μl) or GW9508 (30 μg). For the gene and protein analysis study, expression of the β-endorphin precursor POMC gene (A) and β-endorphin protein (B) levels were determined using qRT-PCR and a specific fluorescent immunoassay kit, respectively. For the immunostaining study, the spinal lumbar enlargements were frozen. Immunofluorescence was stained with the β-endorphin antibody and photomicrographs were taken from the entire spinal cord section (C, D, 500 μm). E. The immunolabeled surface areas of β-endorphin from the spinal dorsal horn laminae I-V indicated in white lines were quantified using the ImageJ program. Data are presented as mean ± SEM (N = 5~8 per group). * P &lt; 0.05, vs saline group; analyzed by unpaired and two-tailed Student t-test. (ZIP 464 kb)
DOI: 10.6084/m9.figshare.7992065.v1
title: Additional file 3: of Activation of GPR40 produces mechanical antiallodynia via the spinal glial interleukin-10/β-endorphin pathway

description: Figure S3. Stimulatory effect of intrathecal injection of GW9508 on β-endorphin expression in the spinal dorsal horn of neuropathic rats induced by L5/L6 spinal nerve ligation. The spinal lumbar enlargements were obtained 1 hour after intrathecal injection of saline (10 μl) or GW9508 (30 μg). For the gene and protein analysis study, expression of the β-endorphin precursor POMC gene (A) and β-endorphin protein (B) levels were determined using qRT-PCR and a specific fluorescent immunoassay kit, respectively. For the immunostaining study, the spinal lumbar enlargements were frozen. Immunofluorescence was stained with the β-endorphin antibody and photomicrographs were taken from the entire spinal cord section (C, D, 500 μm). E. The immunolabeled surface areas of β-endorphin from the spinal dorsal horn laminae I-V indicated in white lines were quantified using the ImageJ program. Data are presented as mean ± SEM (N = 5~8 per group). * P &lt; 0.05, vs saline group; analyzed by unpaired and two-tailed Student t-test. (ZIP 464 kb)
DOI: 10.6084/m9.figshare.7992068
title: MOESM2 of Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer

description: Additional file 2. Â Supplemental tables S1â S13.
DOI: 10.6084/m9.figshare.7992068.v1
title: MOESM2 of Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer

description: Additional file 2. Â Supplemental tables S1â S13.
DOI: 10.6084/m9.figshare.21099157
title: Additional file 1 of Transcriptome analysis and identification of abscisic acid and gibberellin-related genes during seed development of alfalfa (Medicago sativa L.)

description: Additional file 1: Table S1. Summary statistics of RNA-Seq results in seed development of Medicago sativa. Table S2. DEGs of the most representative KEGG pathways. Table S3. List of DEGs involved in biosynthetic and metabolism pathway of ABA and GAs. Table S4. qRT-PCR specific primers.
DOI: 10.6084/m9.figshare.16905062
title: Glycolysis related gene expression signature in predicting prognosis of laryngeal squamous cell carcinoma

description: Researches have suggested that aerobic glycolysis can reflect the development and progression of most carcinomas. We aimed to investigate whether glycolysis-related genes (GRGs) are associated with overall survival in laryngeal squamous cell carcinoma (LSCC). Here, we identified differentially expressed GRGs in TCGA dataset and microarray sample of GSE27020 from GEO database. A set of two glycolytic gene signatures, including <i>DDIT4</i> and <i>PLOD2</i> was screened through Cox and Lasso regression. The risk score was calculated using the gene expression of the two GRGs. The high-risk group presented a poor prognosis through Kaplan–Meier method. The ROC curve indicated good prediction performance in survival based on the validation of four cohorts. Univariate and multivariate Cox regression analyses suggested that two-gene signature could be an independent risk factor in LSCC. A total of 17 LSCC patients were enrolled to clarify the genetic expression through using reverse transcription-polymerase chain reaction (RT-PCR). A visualized nomogram was then constructed to predict 1-, 3-, and 5-year overall survival. Taken together, two novel glycolytic gene signatures were discovered and validated, providing a potential therapeutic and overall survival (OS)-prediction biomarker for LSCC.
DOI: 10.6084/m9.figshare.16905062.v2
title: Glycolysis related gene expression signature in predicting prognosis of laryngeal squamous cell carcinoma

description: Researches have suggested that aerobic glycolysis can reflect the development and progression of most carcinomas. We aimed to investigate whether glycolysis-related genes (GRGs) are associated with overall survival in laryngeal squamous cell carcinoma (LSCC). Here, we identified differentially expressed GRGs in TCGA dataset and microarray sample of GSE27020 from GEO database. A set of two glycolytic gene signatures, including <i>DDIT4</i> and <i>PLOD2</i> was screened through Cox and Lasso regression. The risk score was calculated using the gene expression of the two GRGs. The high-risk group presented a poor prognosis through Kaplan–Meier method. The ROC curve indicated good prediction performance in survival based on the validation of four cohorts. Univariate and multivariate Cox regression analyses suggested that two-gene signature could be an independent risk factor in LSCC. A total of 17 LSCC patients were enrolled to clarify the genetic expression through using reverse transcription-polymerase chain reaction (RT-PCR). A visualized nomogram was then constructed to predict 1-, 3-, and 5-year overall survival. Taken together, two novel glycolytic gene signatures were discovered and validated, providing a potential therapeutic and overall survival (OS)-prediction biomarker for LSCC.
DOI: 10.6084/m9.figshare.16905062.v1
title: Glycolysis related gene expression signature in predicting prognosis of laryngeal squamous cell carcinoma

description: Researches have suggested that aerobic glycolysis can reflect the development and progression of most carcinomas. We aimed to investigate whether glycolysis-related genes (GRGs) are associated with overall survival in laryngeal squamous cell carcinoma (LSCC). Here, we identified differentially expressed GRGs in TCGA dataset and microarray sample of GSE27020 from GEO database. A set of two glycolytic gene signatures, including <i>DDIT4</i> and <i>PLOD2</i> was screened through Cox and Lasso regression. The risk score was calculated using the gene expression of the two GRGs. The high-risk group presented a poor prognosis through Kaplan–Meier method. The ROC curve indicated good prediction performance in survival based on the validation of four cohorts. Univariate and multivariate Cox regression analyses suggested that two-gene signature could be an independent risk factor in LSCC. A total of 17 LSCC patients were enrolled to clarify the genetic expression through using reverse transcription-polymerase chain reaction (RT-PCR). A visualized nomogram was then constructed to predict 1-, 3-, and 5-year overall survival. Taken together, two novel glycolytic gene signatures were discovered and validated, providing a potential therapeutic and overall survival (OS)-prediction biomarker for LSCC.
DOI: 10.6084/m9.figshare.12186255.v1
title: Additional file 2 of Changes of the glutathione redox system during the weaning transition in piglets, in relation to small intestinal morphology and barrier function

description: Additional file 2 Table S2 Overall effects of birht weight (BW), weaning treatment (WT) and days post-weaning (DPW) (n = 36-90). Table S3 The interaction effect of birht weight (BiW) and days post-weaning (DPW) (n = 18). Table S4 The interaction effect of weaning treatment (WT) and days post-weaning (DPW) (n = 12). Table S5 The interaction effect of birht weight (BiW) and weaning treatment (WT) (n = 30).
DOI: 10.17632/nssxb2fmmt.1
title: Independent contributions of discrete dopaminergic circuits to cellular plasticity, memory strength, and valence in Drosophila. Boto et al.

description: Excel files of unprocessed time series traces from Ca2+ imaging experiments, fly counts from T-mazes in behavioral experiments, and confocal z stacks from cell count experiments. Imaging data are pre and post-manipulation odor-evoked responses, and are average fluorescence in an ROI from the mushroom body gamma lobe, alpha lobe tip, or calyx (all horizontal planes). Data are organized according to figure in the manuscript.
DOI: 10.17632/n8ksj69mtt.1
title: LPAs_IGD_SMA_BSI_SLC

description: This dataset gathers data intended to identify profiles of adolescents characterized by unique patterns of psychopathological risks (somatization, obsessive-compulsive, interpersonal sensitivity, depression, anxiety, hostility, phobic anxiety, paranoid ideation, psychoticism), impulsivity, and two technology-based addictions (i.e., IGD and SMA). Gender was also included as a socio-demographic risk factor.
DOI: 10.17632/y5x695378r.1
title: Mapping Study to Find Reusable Elements for the Design of Privacy Friendly Information Systems
DOI: 10.17632/d2f2bdzkty.1
title: Atmospheric corrosion in the Canary Islands (Spain)
DOI: 10.5517/ccdc.csd.ccvgmkg
title: CCDC 788626: Experimental Crystal Structure Determination

description: Related Article: Ömer Yurdakul, Güneş Demirtaş, Necmi Dege, Hasan İçbudak, Dursun Ali Köse, Orhan Büyükgüngör|2016|Hacettepe J. Biol. & Chem|44|95|doi:10.15671/HJBC.20164417570
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/d2f2bdzkty.2
title: Atmospheric corrosion in the Canary Islands (Spain)

description: Local environmental conditions (time of wetness (hours/year), average Cl- and SO2 depositions (mg/(m2·day))) at the 74 corrosion exposure sites determined during 3 years in the Canary Islands
DOI: 10.17632/d2f2bdzkty.3
title: Atmospheric corrosion in the Canary Islands (Spain)

description: Local environmental conditions (time of wetness (hours/year), average Cl- and SO2 depositions (mg/(m2·day))) at the 74 corrosion exposure sites determined during 3 years in the Canary Islands
DOI: 10.17632/dh3cv5p7rv.1
title: Street vending dataset

description: The dataset serve two articles about determinants of street vending. It shows measurable items for some constructs as street vending (SV1-5), poverty (PO1-5), Lack of education (LE1-5), immigration (IM1-5), unemployment (UN1-5), lack of microfinance (LM1-5), urban culture (UC1-5), resistance (RE1-5), and low-income consumption (LC1-5). A total of 425 responses were gathered, all of which were complete and bias free, and thus usable. The data collected has quite represented the public attitudes in Baghdad, a capital city of Iraq, which experiences the pervasiveness of street vending. The process of collecting the data took three months, from the beginning of September to the end of November 2018.