cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18461612.v2
title: Protein accession numbers

description: Accession numbers of protein sequences used for alignments and phylogenetic analysis of BoCCD1s and BoCCD4s proteins<br>
DOI: 10.6084/m9.figshare.25633071.v1
title: Additional file 2 of Muscle loss phenotype in COPD is associated with adverse outcomes in the UK Biobank

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.7097624.v1
title: Supplementary Material for: High Enhancement Settings for White Light Observation Improves Colorectal Polyp Visibility in Color Difference Value and an Endoscopist’s Visibility

description: <b><i>Background/Aims:</i></b> Settings of structure and color enhancement (CE) change view of white light imaging and a preset low enhancement setting is used regularly. The aim of this study was to investigate whether higher enhancement settings increased colorectal lesions’ visibility with endoscopists’ visibility scoring and objective color difference (CD) value. <b><i>Methods:</i></b> From April 2015 to September 2015, we analyzed 27 pictures and 100 videos of colorectal lesions. Combinations of structure enhancement (B3, A3, A5) and CE (CE 0, 1, 3) were evaluated and CD values of 2 corresponding modes (high enhancement: A5 + CE3, preset low enhancement: A3 + CE0) were calculated using marketed software. In the video, these 2 modes were evaluated. All pictures and movies were graded by 4 endoscopists using visibility scores: score 4 (excellent) to score 1 (poor). <b><i>Results:</i></b> The scores of A3 + CE0 (2.74 ± 1.09) were significantly lower than those of all other higher enhancement settings such as B3 + CE1 (3.11 ± 1.08), A3 + CE1 (3.33 ± 0.91), and A5 + CE3 (3.56 ± 0.74; <i>p</i> &lt; 0.001). The CD value of A5 + CE3 was significantly higher than A3 + CE0 (20.2 ± 6.9 vs. 12.9 ± 5.6, <i>p</i> &lt; 0.001). In the video, the scores for A5 + CE3 were significantly higher than A3 + CE0 (3.27 ± 0.83 vs. 2.53 ± 1.05, <i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> Higher enhancement settings increased visibility of colorectal lesions.
DOI: 10.3535/6sd-sjn-f9k
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7mz-w4w-v84
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1q7-7fj-t0n
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9cm-r12-7cl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g6y-q0s-m9v
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13352351.v1
title: Passiflora genomic datasets

description: The genomic data was split into two groups, one dataset containing all the samples of <i>P.</i> <i>foetida</i> plus <i>P.</i> <i>ambigua</i> as an outgroup (hereafter known as the ‘<i>foetida</i> dataset’) and another containing all the other Passifloraceae species and a few representative <i>P.</i> <i>foetida</i> samples (hereafter known as the ‘<i>Passifloraceae</i> dataset’), with <i>Adenia acuta</i> as an outgroup<i>.</i>
DOI: 10.6084/m9.figshare.19234902.v2
title: A Process-explicit Model for the Simulation of Polynesian Colonisation of New Zealand

description: An example R project describing the process-explicit modelling of human colonisation of New Zealand. Data and example simulations are provided, along with fully reproducible analysis code.<br>
DOI: 10.6084/m9.figshare.646183.v1
title: Phylogenetic tree from RDP of Curtobacerium flaccumfaciens UCD-AKU

description: A RDP-produced 16S tree of Curtobacterium flaccumfaciens UCD-AKU in the context of a couple hundred Curtobacterium isolates and an outgroup.
DOI: 10.3535/0tr-nxl-v5v
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h9p-72p-4a8
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5114017.v2
title: PhenoPlasm data dump: 2017-06-16

description: These are malaria parasite phenotypes, curated from literature in the case of the human malaria parasites and extracted from RMgmDB and PlasmoGEM in the case of rodent parasites.
DOI: 10.6084/m9.figshare.5838768.v1
title: A Bioinformatics-Based Strategy Identifies Colon-Specific miR-192/215-5p as Tumor Suppressors and Links Crohn’s Disease and Colorectal Cancer by Targeting Metabolic Pathways

description: <i>Background/Aims:</i> MicroRNAs
have emerged as key regulators involved in a variety of biological
processes. Previous studies have demonstrated that miR-192/215 participated in
progression of Crohn’s disease and colorectal cancer. However, their concrete relationships
and regulation networks in diseases remain unclear. <i>Methods:</i> Here we employed bioinformatics methods to expound
miR-192/215-5p macrocontrol regulatory networks shared by two diseases. For
data mining and figure generation, several miRNA prediction tools, Human miRNA
tissue atlas, FunRich, miRcancer, MalaCards, STRING, GEPIA, cBioPortal, GEO
databases, Pathvisio, Graphpad Prism 6 software, <i>et al.</i> are extensively applied. <i>Results: </i>miR-192/215-5p were specially
distributed in colon tissues and enriched biological pathways were
closely associated with human cancers. Emerging role of miR-192/215-5p and
their common pathways in Crohn’s disease and colorectal cancer was also
analyzed. <i>Conclusion:
</i>Based on results derived from multiple approaches, we
identified the biological functions of miR-192/215-5p as a tumor suppressor and
link Crohn’s disease and colorectal cancer by targeting triglyceride synthesis
and extracellular matrix remodeling pathways.
DOI: 10.6084/m9.figshare.9933911.v1
title: grid.csv

description: Table describing spatial orientation of tissue types in heatmap grid<br>
DOI: 10.3535/b4q-1d6-8s4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bpd-j25-t63
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25953856.v1
title: C0ModelHalvorsenA513 - source signals + refined ones

description: The zip file consists of groups/clusters of signals (refined signals) that are time-separated subsequences obtained from of the source signals. Refined signals have very similar initial values (in terms of value, and the first derivative, and the second one).<br><br>Usage of refined signals allows for examining the influence of insignificant differences in the initial conditions on the signal trajectory, which contributes to the potential detection of chaotic properties of the tested system.<br>The method is described here: https://draugustyn.gitlab.io/refined-signals-4-chaos-detection<br><br>Source signals come from the figshare project “Datasets for learning of unknown characteristics of dynamical systems”.<br><br>The zip file contains either source signals (C0ModelHalvorsenA513-<b><i>m</i></b>.txt, where <b><i>m</i></b> = 1..10) or refined ones (C0ModelHalvorsenA513-<b><i>m</i></b>-<b><i>c</i></b>-<b><i>i</i></b>.txt, where <b><i>c</i></b> - a cluster identifier, <b><i>i</i></b> = 1..3 or 1..2 - index of a signal in a cluster).<br>Source signals come from the figshare project “Datasets for learning of unknown characteristics of dynamical systems”.The source signal for Halvorsen attractor (denoted by CHA_4) is described here: https://draugustyn.gitlab.io/signal-data/
DOI: 10.3535/ch1-cb2-qy7
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s73-s9e-080
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17633/rd.brunel.6429200.v1
title: Faces and voices in the brain dataset

description: The main compressed file contains data and scripts to conduct the main analyses in the manuscript. All scripts run in Matlab, and can run directly if you keep the original folder structure.<br>There is also a file with ROIs in MNI space.<br>Folder_contents.rtf lists all contents, names of data files, scripts, and outputs.<br><br><br>The preprint is available here:https://www.biorxiv.org/content/early/2018/07/13/338475<br><br>
DOI: 10.3535/96q-dbd-6ty
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/crp-09a-gw8
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/08b-9an-wgd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3e3-y3g-l4d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.8144522.v1
title: Table S1 Sequences of the Primers.docx

description: Sequences of the Primers
DOI: 10.15131/shef.data.19161470.v1
title: Data for the study: Quality of life following thyroid and parathyroid surgery

description: Anonymised data set for the study "Quality of life following thyroid and parathyroid surgery"A4.5 QOL data set (identifiable data removed)<br>
DOI: 10.3535/76s-fcp-kc6
title: †Obolus Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wv3-v97-9w5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/sw36dgf56k
title: Data Set on Forecasting Gender Trends for Primary School Teachers in Somalia from Academic Years 2015/2016 - 2025/2026

description: The study aims to analyze and predict the evolving gender dynamics among primary school teachers in Somalia over a decade. By examining historical data from 2015/2016 to 2025/2026, the study seeks to identify trends, disparities, and potential shifts in gender representation within the teaching workforce. This research will provide insights into gender balance in education, informing policy decisions and efforts to promote gender equity in Somalia's primary.
DOI: 10.25439/rmt.14578908.v2
title: In-Gauge and En-Gage Datasets

description: We conducted a field study at a K-12 private school in the suburbs of Melbourne, Australia. The data capture contained two elements: First, a 5-month longitudinal field study In-Gauge using two outdoor weather stations, as well as indoor weather stations in 17 classrooms and temperature sensors on the vents of occupant-controlled room air-conditioners; these were collated into individual datasets for each classroom at a 5-minute logging frequency, including additional data on occupant presence. The dataset was used to derive predictive models of how occupants operate room air-conditioning units. Second, we tracked 23 students and 6 teachers in a 4-week cross-sectional study En-Gage, using wearable sensors to log physiological data, as well as daily surveys to query the occupants' thermal comfort, learning engagement, emotions and seating behaviours. This is the first publicly available dataset studying the daily behaviours and engagement of high school students using heterogeneous methods. The combined data could be used to analyse the relationships between indoor climates and mental states of school students.
<strong>The detailed data descriptor has been published in Nature Scientific Data</strong>. For more details on the dataset, please check the paper. https://doi.org/10.1038/s41597-022-01347-w.
Please<strong> cite </strong>the following papers if the dataset is used in a publication:
[1] Gao, N., Marschall, M., Burry, J. , Watkins, S., Salim, F. Understanding occupants’ behaviour, engagement, emotion, and comfort indoors with heterogeneous sensors and wearables. Sci Data 9, 261 (2022). 
[2] Gao, N., Shao, W., Rahaman, M. S., & Salim, F. D. (2020). n-Gage: Predicting in-class Emotional, Behavioural and Cognitive Engagement in the Wild. Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies, 4(3), 1-26.
DOI: 10.3535/md8-66f-mc6
title: marble

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/3csw4wmjnr
title: Research data supporting "Roughness spectroscopy of particle monolayer: Implications for spectral analysis of the monolayer image". B-spline representation of radial distribution function.

description: The files contain knots and coefficients of third order (quadratic) B-spline representation approximating a radial distribution function (RDF).
We calculated the function for a hard-disk monolayer generated with event-driven molecular dynamics, of surface coverage 0.85. Specifically, to produce the monolayer, we used the program PackLSD.64.x by Aleksandar Donev, available at https://cims.nyu.edu/~donev/Packing/PackLSD/Instructions.html. We started the simulation of 8.5E7 disks at the initial surface coverage of 0.1 to gradually increase their size. In the nml parameter file, we set the disk expansion rate parameter expansions_=0.001. Once the surface coverage achieved 0.85, we stopped the simulation.
We generated 26 replicas of the big system with a constant area of square simulation box. For each replica, we first calculated the discrete RDF g(r) by counting disk pairs in narrow distance intervals of width dr = 1E-3 a, where a is the disk radius. In the narrow interval 3.9900 ≤ r ≤ 4.0020, where the slope of the RDF changes extremely rapidly, we used the ring thickness 1E-4. For each replica of the system, we calculated the mean distance and RDF over the 88108 narrow intervals, averaging over the central particles. We calculated 26 replicas of the function g(r) in the range from r = 2a to r = 90a. Averaging over them, we got 88108 discrete, arithmetic mean values of RDF and standard deviations of the means. We identified the maximum value of the RDF standard deviation to be 0.009. Finally, we fit a third order (quadratic) B-spline representation to the mean RDF. For that, we used the procedure DFC of SLATEC library, with 3786 proper knots.
To calculate the RDF with the B-spline, you can use the procedure DBVALU of SLATEC library. The knot vector in the attached file begins and ends with two improper knots, in accordance with requirements of the procedure. For details, see the paper: P. Weroński & K. Pałka, "Roughness spectroscopy of particle monolayer: Implications for spectral analysis of the monolayer image", Measurement 196 (2022) 111263.
DOI: 10.3535/axz-f9b-3r4
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vka-h4g-ev9
title: marble

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1111871.v1
title: Pig, Mud, Herts UK

description: Bioturbated surface created from pigs walking and rooting in mud. Notes: Some very odd scour marks left by the snout make for a highly complex surface - one that would be extremely difficult to interpret in the fossil record.
DOI: 10.3535/nde-zmf-2dh
title: Sandstone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rsk-6dt-cjj
title: marble

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qed-38f-vnb
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rw1-vn8-xx9
title: Sandstone

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27967320.v1
title: Additional file 1 of Identifying innovation factors and actors in autonomous inland shipping: a literature review

description: Additional file 1.
DOI: 10.3535/jts-c3f-5zr
title: †Strophomena Blainville, 1824

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mj7-s3h-cd5
title: Marl

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26955628.v1
title: Multicellular ecotypes shape progression of lung adenocarcinoma from ground-glass opacity toward advanced stages(scTE)

description: We upload the scTE results (https://github.com/JiekaiLab/scTE) for scRNAseq (PMID: <b>38554705</b>), and clinical information is available at Table S1
DOI: 10.3535/3a0-gj2-87h
title: Limonite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ep1-9ff-ldl
title: Dolomite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9h1-wa2-n9v
title: Limonite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bj1-37d-phn
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.11583/dtu.13048847.v1
title: Raw data used in "A Spatial Irradiance Map Measured on the Rear Side of a Utility-Scale Horizontal Single Axis Tracker with Validation using Open Source Tools"

description: This is the raw data used in the publication "A Spatial Irradiance Map Measured on the Rear Side of a Utility-Scale Horizontal Single Axis Tracker with Validation using Open Source Tools" presented at the 47th IEEE Photovoltaic Specialists Conference (PVSC). <br>The expanded measurement uncertainty of the rear plane of array (POA) irradiance measurements was estimated at ±9.3%. The three principal components driving the uncertainty are the spectral mismatch observed in the field, the lab calibration (light source irradiance), and the angular response. No corrections are applied to these data.<br>Edge modules are about 0.5 m north of the tracker's south edge. Inner modules are about 21.5 m north of the tracker's south edge. <br>Cell Number 10 is the closest to the torque tube, Cell Number 1 is the farthest away from the torque tube (see Fig. 2 and Fig. 3 from publication). Cells are 125x125mm with ~2mm spacing between each cell. Cells are approximately in plane with the tracker torque tube.
DOI: 10.3535/dyz-4yx-623
title: Hydrogoethite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rft-qgv-dr2
title: Magnetite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25919449.v1
title: Normative data for insulin-like growth factor-1 (IGF-1) in healthy children and adolescents from India

description: This study provides ethnicity-specific normative data on serum IGF-1 and will improve the diagnostic utility of IGF-1 in the evaluation and management of growth disorders in Indian children and adolescents.
DOI: 10.3535/cvp-wx0-bmm
title: rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yj5-lq7-ljj
title: Psilomelane

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25814083.v1
title: qPCR_LinRegPCR-efficiency-corr.xlsx

description:  In this study, we identified novel interaction partners of wt and truncated MAGEL2.
DOI: 10.3535/zvg-q0f-xjr
title: Bismutite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1235649.v1
title: ESTRES LABORAL EN EL CENTRO DE SALUD EL EMPALME

description: ESTRES LABORAL EN EL CENTRO DE SALUD EL EMPALME
DOI: 10.6084/m9.figshare.21922827.v2
title: Original data for calculating PCEC-EIs in 2010-2019

description: Provincial GDP, year-end population, industrial added value, forestry land areas, construction land areas, and agricultural land areas were derived from the <em>China Statistical Yearbook 2020.</em> Provincial R & D funding was obtained from the <em>2019 statistical bulletin of national science and technology investment. </em>The <em>China Energy Statistical Yearbook 2020 </em>provided data on provincial total energy consumption, coal-dominated energy consumption, gross electricity generation, and renewable electricity generation (including hydro, nuclear, wind, and solar). The provincial industrial and household energy consumption was calculated using the provincial energy balance sheet from the <em>China Energy Statistical Yearbook 2020</em> and the reference coefficients of various energy sources converted into standard coal provided by the Ministry of Industry and Information Technology.
DOI: 10.3535/eer-ehg-2e1
title: Conochitina aff. sp.4

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f2s-qz3-cks
title: Cassiterite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xxv-e1b-k3h
title: Conochitina aff. sp.4

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28160042.v1
title: Supplement XII for “Recombinant expression of receptor binding domains of all eight subtypes of botulinum neurotoxin type A for generation of antitoxins with broad reactivity”.

description: Supplement XII
DOI: 10.6084/m9.figshare.6994859.v1
title: Index_DTMs

description: The file contains a list of all the image pairs used to produce DTMs and their corresponding file names.
DOI: 10.3535/k98-jqe-avj
title: Conochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12757156.v1
title: Additional file 9 of Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

description: Additional file 9: Table S7. Differential node weights comparing GEN KPNNs trained to distinguish different molecular subtypes of glioblastoma.
DOI: 10.6084/m9.figshare.12961811.v1
title: Phenotypes for powdery mildew GWAS winter wheat

description: tab separeted text
DOI: 10.6084/m9.figshare.24902805.v1
title: Dynamic changes in gene expression of growing nonhuman primate antral follicles

description: This study analyzed cohorts of three sizes of developing antral follicles obtained from adult rhesus macaque females using RNA sequencing of oocytes and cumulus and granulosa cells.
DOI: 10.3535/rwv-9b1-cc9
title: Conochitina sp.5

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vxg-y37-v56
title: Conochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2z6-mpy-h37
title: Plectochitina cf. spongiosa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g4j-q5a-mve
title: Conochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.