cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5708683.v1
title: Electronic supplementary material from Dynamics of lumps and dark–dark solitons in the multi-component long-wave–short-wave resonance interaction system

description: General semi-rational solutions of an integrable multi-component (2 + 1)-dimensional long-wave–short-wave resonance interaction system comprising multiple short waves and single long wave are obtained by employing the bilinear method. These solutions describe interaction between various types of solutions including line rogue waves, lumps, breathers and dark solitons. We only focus on the dynamical behaviours of interaction between lumps and dark solitons in this paper. Our detailed study reveals two different types of excitation phenomena: fusion and fission. It is shown that the fundamental (simplest) semi-rational solutions can exhibit fission of a dark soliton into lump and a dark soliton or fusion of one lump and one dark soliton into a dark soliton. The non-fundamental semi-rational solutions are further classified into three subclasses: higher-order, multi- and mixed-type semi-rational solutions. The higher-order semi-rational solutions show the process of annihilation (production) of two or more lumps into (from) one dark soliton. The multi-semi-rational solutions describe <i>N</i>(<i>N</i>≥2) lumps annihilating into or producing from <i>N</i>-dark solitons. The mixed-type semi-rational solutions are a hybrid of higher-order semi-rational solutions and multi-semi-rational solutions. For the mixed-type semi-rational solutions, we demonstrate an interesting dynamical behaviour that is characterized by partial suppression or creation of lumps from the dark solitons.
DOI: 10.6084/m9.figshare.24592848.v2
title: Database_Strychnos_population structure and fruit production.xlsx

description: This database results from a research study undertaken on "Factors affecting population structure and fruit production of Strychnos innocua Delile and Strychnos spinosa Lam., two fruit tree species in Benin, West Africa." The analyses in the article were made based on this dataset.
DOI: 10.6084/m9.figshare.28694285.v1
title: Supplementary table of [Virulence Determinants of HA-MRSA versus PVL-negative CA-MRSA]

description: This data conatined supplementary table of [Virulence Determinants of HA-MRSA versus PVL-negative CA-MRSA]<b>List</b><br>Table S1. Biological characteristics of the S. aureus strains used in this study<br>Table S2. Proteomics result of HA-MRSA-ST5 strains<br>Table S3. Proteomics result of CA-MRSA-ST72 strains<br>Table S4. Immonoproteomics result of HA and CA-MRSA that bind IgG<br>Supp qPCR. Raw Cq data of qantitative real-time PCRARRIVE checklist_Virulence
DOI: 10.6084/m9.figshare.20161541.v1
title: Motivational trade-off video data

description: The behavioural events recorded from the video analysis for the motivational trade-off experiment, as well as subject IDs, temperature and sucrose conditions, bout numbers, colony IDs and position of feeders.
DOI: 10.6084/m9.figshare.3521381.v1
title: Appendix D. Seasonal patterns of floral area, bee abundance, and bee diversity.

description: Seasonal patterns of floral area, bee abundance, and bee diversity.
DOI: 10.6084/m9.figshare.14986599.v1
title: Supplementary Material for: Long-Term Risk of Ischemic Stroke among Elderly Survivors of Non-Traumatic Subarachnoid Hemorrhage

description: <b><i>Introduction:</i></b> Non-traumatic subarachnoid hemorrhage (SAH) is associated with poor long-term functional outcomes, but the risk of ischemic stroke among SAH survivors is poorly understood. <b><i>Objectives:</i></b> The aim of this study was to evaluate the risk of ischemic stroke among survivors of SAH. <b><i>Methods:</i></b> We performed a retrospective cohort study using claims data from Medicare beneficiaries from 2008 to 2015. The exposure was a diagnosis of SAH, while the outcome was an acute ischemic stroke, both identified using previously validated <i>ICD-9-CM</i> diagnosis codes. We used Cox regression analysis adjusting for demographics and stroke risk factors to evaluate the association between SAH and long-term risk of ischemic stroke. <b><i>Results:</i></b> Among 1.7 million Medicare beneficiaries, 912 were hospitalized with non-traumatic SAH. During a median follow-up of 5.2 years (IQR, 2.7–6.7), the cumulative incidence of ischemic stroke was 22 per 1,000 patients per year among patients with SAH, and 7 per 1,000 patients per year in those without SAH. In adjusted Cox models, SAH was associated with an increased risk of ischemic stroke (HR, 2.0; 95% confidence interval, 1.4–2.8) as compared to beneficiaries without SAH. Similar results were obtained in sensitivity analyses, when treating death as a competing risk (sub HR, 3.0; 95% CI, 2.8–3.3) and after excluding ischemic stroke within 30 days of SAH discharge (HR, 1.5; 95% CI, 1.1–2.3). <b><i>Conclusions:</i></b> In a large, heterogeneous national cohort of elderly patients, survivors of SAH had double the long-term risk of ischemic stroke. SAH survivors should be closely monitored and risk stratified for ischemic stroke.
DOI: 10.6084/m9.figshare.17091737.v1
title: Supplementary Material for: Post-Progression Survival Highly Influences Overall Survival in Driver Gene Mutation/Translocation Negative or Unknown Type of Non-Small Cell Lung Cancer

description: Introduction: In stage I–III non-small cell lung cancer (NSCLC), which is considered operable, surgical resection is the most efficacious treatment and is considered to provide a cure. However, after complete surgical resection, approximately 50% of patients with stage I–IIIA NSCLC experience recurrence and death. Once postoperative recurrence of NSCLC occurs, the prognosis is significantly poor, and the course of treatment after recurrence may influence overall survival (OS). Consequently, we investigated the relationship between relapse-free survival (RFS), post-progression survival (PPS), and OS in patients with postoperative recurrence of NSCLC with driver gene mutation/translocation negative or unknown status. Methods: Between January 2007 and September 2019, 101 patients with driver gene mutation/translocation negative or unknown status of NSCLC who underwent complete resection and in whom recurrence occurred were analyzed. The associations between RFS, PPS, and OS were analyzed at the individual patient level. Results: Linear regression and Spearman rank correlation analyses revealed that PPS was strongly associated with OS (r = 0.83, p &lt; 0.0001, R2 = 0.71), whereas RFS was moderately correlated with OS (r = 0.65, p &lt; 0.0001, R2 = 0.48). In the multivariate analysis, performance status at relapse, administration of immune checkpoint inhibitors, and radiotherapy for oligo-recurrences were significantly associated with PPS (p &lt; 0.001). Conclusion: Current analysis of individual-level data of patients who underwent complete resection implied that PPS had a higher impact on OS than RFS in patients with postoperative recurrence of driver gene mutation/translocation negative or unknown status of NSCLC. Additionally, current perceptions indicate that treatment beyond progression after complete surgical resection might strongly affect OS.
DOI: 10.6084/m9.figshare.3829824.v2
title: The influence of major types on the preference of movie genres

description: Data was collected by asking 19 people their age in years, their choice of program at York University, and their preferred movie genre. Answers were trusted in full no proof or documentation needed. <br>Hypothesis: The age and major of a university student affects the choice of movies they watch because their maturity and choice of study reflects their general interests. <br>Predictions: It is expected that a science-based major will have more interest in Sci-fi movies than any other genre. It is expected that students over the age of 21 will show more of an interest in action movies.
DOI: 10.6084/m9.figshare.21623616.v1
title: Children's responses and creations from Jac's River Adventure workshops in Wales, United Kingdom

description: The excel file presents the textual data (transcribed verbal responses) from children about Jac's River Adventure and local features (tab: CodedConnections), local river species (tab: CodedSpeciesKnowledge), and the elements, perspective, and whether an actual or imagined experience expressed in their river adventure creations (tab: Coded-Elements-byID). The zip file contains visual data (the children's creations) made during the Jac's River Adventure Workshops. The ID numbers for each visual data in the zip file correspond with the ID in the third tab of the excel file for matching up the verbal and visual expressions by the children. 
The two datasets are presented in Januchowski-Hartley, S.R., Giannoulatou, I.D., Evans,  J., and Howells, S. (in review). Jac’s River Adventure: exploring an arts-based method for research and engagement about rivers in classrooms.
*Corresponding author: Stephanie Januchowski-Hartley, s.r.januchowski@swansea.ac.uk or s.r.januchowski@gmail.com
DOI: 10.6084/m9.figshare.28060331.v1
title: Experiment outputs of HSphNN

description: This dataset is a sample output of HSphNN in conducting the experiments described in the paper "Neural Reasoning for Sure through Constructing Explainable Models".
DOI: 10.6084/m9.figshare.16880536.v1
title: Arrive-ten-aby

description: Arrive essential for animal laboratory
DOI: 10.6084/m9.figshare.20297139.v1
title: Supplementary Material for: Impact of Social Isolation on the Physical and Mental Health of Older Adults: A Follow-Up Study at the Apex of the COVID-19 Pandemic in Brazil

description: <b><i>Introduction:</i></b> The COVID-19 pandemic has affected people’s lives and caused changes in habits. The World Health Organization recommends social isolation as a way of minimizing the risk of contagion of the disease. <b><i>Objective:</i></b> The aim of the study was to assess the impact of social isolation due to COVID-19 pandemic on the physical and mental health of older adults and to investigate how anthropometric, functional, and clinical aspects are associated with this process. <b><i>Methods:</i></b> Fifty healthy older adults were followed-up during 5 months. The subjects had their physical and mental health assessed during social isolation (pre-vaccine situation) and after the opening of stores and activities in the municipality (post-vaccine situation). Physical evaluation was performed using the 30-s sit and stand test. Participants’ mental health was assessed with the Geriatric Depression Scale and the Loneliness Index. In this methodological design, muscle strength, depressive symptoms, and loneliness index were subject to pre-post analyses. In addition, these variables were included as outcomes in linear regression models. Participants’ anthropometric, functional, and clinical factors were included as predictors of the statistical model. <b><i>Results:</i></b> Participants’ scores at baseline were consistent with mild depressive symptoms and low loneliness. The muscle strength of the subjects was appropriate to their ages. After 5 months of social isolation, all variables declined, but with statistical significance only for depressive symptoms (<i>p</i> = 0.017, effect size of 0.11). Anthropometric, functional, and clinical factors explained 42.8% of depressive symptoms, 22.3% of loneliness, and 30.2% of muscle strength in the elderly. <b><i>Discussion/Conclusion:</i></b> Older adults presented baseline scores consistent with mild depressive symptoms and low loneliness. The muscular strength of the subjects was appropriate for their ages. After 5 months of social isolation, all variables declined. Anthropometric, functional, and clinical factors explained a substantial part of the depressive symptoms, loneliness, and muscular strength in the elderly. Health care professionals should be aware of performing a wide assessment in subjects’ lives to ensure better health status.
DOI: 10.6084/m9.figshare.22269037.v1
title: TileMapdata.zip

description: Test data at Level 9 to Level 14 from Baidu map, Amap, and Google map
DOI: 10.6084/m9.figshare.4754008.v1
title: Dummy data

description: Fisher's iris
DOI: 10.6084/m9.figshare.11994579.v1
title: GenBank Contamination

description: Contamination prediction for GenBank (Dec 2018) by conterminator (https://github.com/martin-steinegger/conterminator).<br>The predictions are TSV formated. The following is the column defintion:<br><br>1.) Numeric identifier<br>2.) Contaminated identifier<br>3.) Kingdom (0: Bacteria&Archaea, 1: Fungi, 2: Metazoa, 3: Viridiplantae, 4: Other Eukaryotes)<br>4.) Species name<br>5.) Alignment start<br>6.) Alignment end<br>7.) Corrected contig length<br>8.) Identifier of the longest contaminating sequence<br>9.) Kingdom of the longest contaminating sequence<br>10.) Species name of the longest contaminating sequence<br>11.) Length of the longest contaminating sequence<br>12.) Count how often sequences from contaminating kingdom align<br><br>Contaminated identifiers can occur multiple times if multiple alignments were detected.
DOI: 10.6084/m9.figshare.22300426.v1
title: Qualitative raw data

description: This is qualitative data from the perspectives from multiple stakeholders.
DOI: 10.6084/m9.figshare.26197559.v1
title: <b>Concordance of Oral and Anal Human Papillomavirus in Men Who Have Sex with Men Living with HIV in Northern Taiwan</b>

description: <b>Objectives: </b>To detect HPVs in oral and anal sites and explore the correlation between these 2 sites among HIV-positive men who have sex with men (MSM) in Taiwan.<b>Methods: </b>HIV-infected men who attended the outpatient clinics at Taoyuan General Hospital, Taiwan, were enrolled. Oral gargling and anal swabs were collected for linear array HPV genotyping tests.<b>Results: </b>A total of 196 participants were eligible for analysis. The mean age (±SD) was 32.2 (±6.9) years, and &gt;90% were MSM. Their mean (±SD) CD4 T+ cell count was 588 (± 267) cells/µL, and 73% had a fully suppressed viral load. Anal HPV was detected in 184 participants (93.8%), with 82.7% having oncogenic types. Oral HPV was detected in 21 participants (10.7%), with 28.6% having oncogenic types. Further, 45.5% (15/33) of oral genotypes were found on anal sites. Only 30.1% of participants used condoms during oral sex. Concordant oral HPVs were significantly associated with the number of anal HPV genotypes (odd ratio 1.51, 95% CI 1.21-1.88, p=0.015), after adjusting for variables such as sex party participation, web-met sex, history of sexually transmitted diseases, substance use, and number of anal oncogenic HPVs.<b>Conclusions: </b>Oral HPV infection is not uncommon among PLWH, with a substantial proportion of the same genotypes also found at anal sites. Emphasizing condom use during oral sex could be beneficial for HPV prevention among PLWH. Furthermore, HPV vaccination should be promoted among MSM living with HIV.
DOI: 10.6084/m9.figshare.12600410.v1
title: Basel Fairness Questionnaire

description: Validation of the Basel Fairness Questionnaire; SPSS data file with variables labeled in German; the study sample consisted of 305 Swiss claimants for work disability benefits undergoing multidisciplinary work disability evaluations<br>
DOI: 10.6084/m9.figshare.3554718.v1
title: Appendix H. Some basic theoretical properties of coverage-based species accumulation curves.

description: Some basic theoretical properties of coverage-based species accumulation curves.
DOI: 10.6084/m9.figshare.5665648.v1
title: Additional file 1: Table S1. of Clinical significance of PCDH10 promoter methylation in diffuse large B-cell lymphoma

description: The clinicopathological characteristics and PCDH10 methylation status of 107 cases are showed in this table. (XLS 32 kb)
DOI: 10.6084/m9.figshare.2058702.v1
title: iMet-Q: a user-friendly tool for label-free metabolomics quantitation using dynamic peak-width determination

description: A standard metabolite mixture in which seven standard metabolites with different sample concentration in two samples. Please go to iMet-Q website (http://ms.iis.sinica.edu.tw/comics/Software_iMet-Q.html) for more details.
DOI: 10.6084/m9.figshare.24419710.v2
title: AT & SA dataset

description: The dataset of manuscript
DOI: 10.6084/m9.figshare.19870267.v1
title: Raw data set for Table 1

description: Comparison of clinical sensitivity between Rapid antigen tests for SARS-CoV-2 to determine whether the sensitivity of different antigen tests differs significantly. <br> Anatomical test location: ”N” anterior nasal cavity test, ”OP” deep oropharyngeal test, ”S” saliva. <br> Comparisons of sensitivity estimates between any two tests were done paired (McNemar test for the true positive distribution within gold standard positive measurements) or nonpaired (chi-squared test for the true positive distribution within gold standard positive measurements). The choice of paired or nonpaired comparison was based on whether the majority of data came from individuals, who had taken both tests or individuals who had taken only one of the tests. To adjust for multiple testing, Bonferroni correction of the p-values was used by multiplying the p-value by the number of tests performed. A p-value larger than 1 after correction was set to 1. All analysis was done using R 3.6.1 (R Foundation for Statistical Computing, Vienna, Austria), all p-values less than 0.05 were considered statistically significant.
DOI: 10.6084/m9.figshare.23664450.v1
title: GaMD files for a1AR-epinephrine-Gq

description: complex.inpcrd: the initial coordinate file for MD simulation (AMBER format) complex.pdb: the initial coordinate file (PDB format) complex.prmtop: the topology file for MD simulation (AMBER format) gamd-replica[1-3]-final.pdb: the final coordinate file from GaMD production simulations (PDB format) md.in: the input file for GaMD equilibration gamd-restart.in: the input file for the first run of GaMD production md-restart.in: the input file for the restart of GaMD production <br>
DOI: 10.6084/m9.figshare.24884592.v2
title: Data for: Evidence of trophic separation among threatened mobulid rays in Aotearoa New Zealand: Insights from species distribution modelling

description: Oceanic manta ray (Mobula birostris) dataset, spinetail devil ray (Mobula mobular) dataset and environmental data used for the publication "Evidence of trophic separation among threatened mobulid rays in Aotearoa New Zealand: Insights from species distribution modeling" in review. The study looked at the spatial and temporal distribution of mobulid rays (oceanic manta ray and spinetail devil ray) on the northeastern shelf of the North Island over a study period that spanned almost two-decades.Data for oceanic manta ray (n = 366) were collecting by a combined effort from Manta Watch New Zealand and citizen scientists and contains geographic coordinates (in ESPG: 4326 and 2193), year, month and day of observation. Records from the dataset that were missing coordinates or an approximate date reference (month and year) were removed. Points with positional errors (i.e., on land) were also removed. Data for spinetail devil ray (n = 285) was obtained from the New Zealand Ministry for Primary Industries (MPI) Centralised Observer Database (COD) for observer reported captures from 2004 to 2021 and Non-Fish Protected Species Catch Returns (NFPS) for commercial captures from 2008 to 2021. All records were obtained from purse seine fisheries between December and April. Spinetail devil ray data is classified as commercially sensitive due to the presence of sensitive fishery information. Therefore, to ensure industry sustainability and balance between sharing information only vessel key, catch year and geographic coordinates (in ESPG: 4326 and 2193) is included. All purse seine catch from 2004 to 2021 is also included, used as absence data for the spinetail devil ray model in the publication. The same is true for this data where only vessel key, catch year and geographic coordinates (in ESPG: 4326 and 2193) is included.Environmental data used in the paper is also included. Variables include: Chlorophyll-a (Chl-a) (Gall et al., 2022), Sea surface temperature (SST) (Gall et al., 2022), Chl-a gradient (Pinkerton et al., 2020), SST gradient (Pinkerton et al., 2020), slope (calculated from Mitchell et al., 2012), distance to 200m isobath (dist200) (calculated from Mitchell et al., 2012), distance to coast (distcoast) (calculated from Land Information New Zealand).For dynamic variables, the name of the variable denotes the species (DEVIL or MANTA) and the duration of the study period. Each .RData file is saved as a list where each object is a annual layer that is a raster layer which only includes the months where a presence of the given species was present. Records from the dataset that were missing (i.e., cloud cover) were removed.
DOI: 10.6084/m9.figshare.13370870.v1
title: Patient outcomes following monofer or venofer for iron deficiency anaemia in pregnancy

description: Data spreadsheet comparing patient outcomes between groups of patients receiving monofer or venofer for iron deficiency anaemia in pregnancy
DOI: 10.6084/m9.figshare.1594769.v2
title: Grasping in one-handed catching in relation to performance: Data Set used for the analysis

description: <b>Data of analysis variables for all the individuals and experimental conditions. </b>First column reports the subjects ID. Second and third columns report the categorical variable indicating the different experimental conditions (iT [1,2,3], iZ =[1 2]).. Forth column reports the catching performance outcome (i.e. 1= grasped, 0 = touched , 2 = missed). Subsequent columns report the hand and wrist kinematic features analyzed in the preset study and described in the methods section of the manuscript
DOI: 10.6084/m9.figshare.1321351.v1
title: LaTeX – A document preparation system

description: My review of LaTeX, 1987
DOI: 10.6084/m9.figshare.19634631.v1
title: Supplementary Material for: Predictors of Kidney Outcomes of Anti-Glomerular Basement Membrane Disease in a Large Chinese Cohort

description: <b><i>Introduction:</i></b> Anti-glomerular basement membrane (GBM) disease is a rare but the most aggressive form of glomerulonephritis. To dissect the prognostic factors, we retrospectively analyzed the clinical features of a large cohort and compared the clinical features and prognosis during decades. <b><i>Methods:</i></b> Data on clinical manifestation, treatment, and prognosis were collected. Cox models and receiver operating characteristic (ROC) curve were used to investigate the predictors for outcomes. The Kaplan-Meier curve and log-rank test were used to compare kidney and patient survival. <b><i>Results:</i></b> A total of 448 patients were enrolled. Patient survival and kidney survival at 1 year was 69.4% and 37.7%, respectively. During the past 3 decades, mortality at 3 months and 1 year significantly dropped from 37.5% and 57.1% in 1991–2000 to 2.8% and 6.9% in 2011–2020 (<i>p</i> &lt; 0.001), respectively; kidney prognosis showed a tendency of improvement as well. Serum creatinine (Scr) on diagnosis (HR, 1.16; 95% CI, 1.05–1.29) and crescent percentage (HR, 1.73; 95% CI, 1.34–2.24) were independent predictors for end-stage kidney disease. ROC curve showed that the optimal cutoff point of Scr on diagnosis for prediction of dialysis dependency at 1 year was 536.4 μmol/L (sensitivity 88.3% and specificity 80.8%). Antineutrophil cytoplasmic antibodies (ANCAs) positivity (HR, 4.43; 95% CI, 1.72–11.38) was a predictor for mortality. Plasma exchange was associated with a better patient prognosis (HR, 0.40; 95% CI 0.16–0.95). <b><i>Conclusion:</i></b> Scr on diagnosis and percentage of crescents were predictors for kidney outcomes. Positive ANCA was a predictor for mortality. Overall patient prognosis of anti-GBM disease was improved during the past 3 decades.