cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6sabmq
title: Occurrence Download

description: A dataset containing 103795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mustela putorius",
 "Country is one of (Albania, Austria, Bosnia and Herzegovina, Belgium, Bulgaria, Belarus, Switzerland, Cyprus, Czechia, Germany, Denmark, Estonia, Spain, Finland, France, United Kingdom of Great Britain and Northern Ireland, Greece, Croatia, Hungary, Ireland, Italy, Lithuania, Luxembourg, Latvia, Moldova, Republic of, Montenegro, North Macedonia, Malta, Netherlands, Norway, Poland, Portugal, Romania, Serbia, Sweden, Slovenia, Slovakia, Türkiye, Ukraine, Kosovo)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 103795 records from 864 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008303-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25716/gude.0zrz-tnmt
title: The inflammatory architecture reflects the effects of pharmacological and genetic interventions on resolution of inflammation

description: During an innate immune response, immune cells form defined pro- and anti-inflammatory regions around a pathogen. These include, in toll-like receptor (TLR)-2-induced inflammation, a core region containing the pathogen, an adjacent pro-inflammatory (PI) region and a surrounding anti-inflammatory (AI) region. Interventions targeting specific immune cells or signaling pathways disrupt this architecture and affect the resolution of inflammation. Here, we investigated, which changes in the inflammatory architecture may favor an increased resolution of inflammation. Elimination of neutrophil recruitment using antibody depletion or GPR40-deficient mice had little effect on macrophage polarization and localization, formation of the inflammatory structure or resolution of inflammation, as determined by the duration and strength of thermal hypersensitivity. High content imaging and FACS analysis showed that macrophages and eosinophils compensated for the loss of neutrophils in pathogen phagocytosis. In contrast, G2A-deficient mice, which exhibit enhanced resolution of zymosan-induced hyperalgesia, have reduced macrophage recruitment and polarization as well as a shift in the inflammatory architecture towards anti-inflammation. Importantly, the reduction of M1-like macrophage polarization without reduction of macrophage numbers by the JAK1/2 inhibitor baricitinib was not sufficient to alter the inflammatory structure or resolution of inflammation. Combined with previously published results in the same inflammation model, we find that a strong decrease or increase of the PI region negatively impacts resolution of inflammation, whereas a moderate decrease seems to promote resolution of inflammation.
DOI: 10.15468/dl.ajqcj8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Astracantha pulvinata (Bunge) Podlech",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010971-250525065834625/datasets/export for details.
DOI: 10.15468/dl.qsuccb
title: Occurrence Download

description: A dataset containing 43242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus catharticus Vahl)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 43242 records from 952 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010969-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/a7bfwu
title: Curated World Values Survey Data for Ethiopia – Trust, Social Norms and Economic Institutions Study

description: This dataset consists of curated data from the World Values Survey (WVS) used for the present study on social norms, trust, and economic behavior in Ethiopia. It includes responses from individuals across various regions of Ethiopia, capturing their perceptions of social norms, trust in financial and other institutions, and economic decision-making patterns. The dataset incorporates demographic variables such as age, gender, education, and location. It serves as the primary source for analyzing how social norms influence trust and economic behaviors within the Ethiopian context, enabling both quantitative and qualitative analyses as detailed in the research
DOI: 10.15468/dl.jkpsnv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia Parr, 1937",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 10.8496,35.9648 10.8496,35.9648 1.8496,44.9648 1.8496,44.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010972-250525065834625/datasets/export for details.
DOI: 10.15468/dl.maqbfj
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Astragalus agrestis Douglas ex G.Don",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 441 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010973-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uk5dft
title: Occurrence Download

description: A dataset containing 29144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus commutatus Schrad.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 29144 records from 829 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010974-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.h70rxwdhh
title: Data from: Sex-specific associations between life history traits and a novel reproductive polymorphism in the Pacific field cricket

description: Associations between heritable polymorphisms and life-history traits, such
 as development time or reproductive investment, may play an
 underappreciated role in maintaining polymorphic systems. This is because
 selection acting on a particular morph could be bolstered or disrupted by
 correlated changes in life-history or vice versa. In a Hawaiian population
 of the Pacific field cricket (Teleogryllus oceanicus), a novel mutation
 (flatwing) on the X-chromosome is responsible for a heritable polymorphism
 in male wing structure. We used laboratory cricket colonies fixed for male
 wing morph to investigate whether males and females bearing the flatwing
 or normal-wing (wild-type) allele differed in their life-history traits.
 We found that flatwing males developed faster and had heavier testes than
 normal-wings, whereas flatwing homozygous females developed slower and had
 lighter reproductive tissues than normal-wing homozygous females. Our
 results advance our understanding of the evolution of polymorphisms by
 demonstrating that the genetic change responsible for a reproductive
 polymorphism can also have consequences for fundamental life-history
 traits in both males and females.
DOI: 10.5061/dryad.g4f4qrfpk
title: Data from: Perinatal depression and anxiety in women with MS: a population-based cohort study

description: Objective: To assess the occurrence of perinatal depression and
 anxiety in women before and after diagnosis of multiple sclerosis (MS).
 Methods: 114,629 pregnant women were included in the Norwegian
 Mother, Father and Child Cohort study 1999–2008. We assessed depression
 and anxiety by questionnaires during and after pregnancy. Women with MS
 were identified from national health registries and hospital records and
 grouped into 1) MS diagnosed before pregnancy (n = 140), MS diagnosed
 after pregnancy with 2) symptom onset before pregnancy (n = 98) and 3)
 symptom onset after pregnancy (n = 308). Thirty-five women were diagnosed
 with MS in the postpartum period. The reference group (n = 111,627)
 consisted of women without MS. Results: Women with MS diagnosed
 before pregnancy had an adjusted odds ratio of 2.0 (95% confidence
 interval 1.2–3.1) for depression in the third trimester. Risk factors were
 adverse socioeconomic factors, history of psychiatric disease and
 physical/sexual abuse. The risk of anxiety was not increased. Women
 diagnosed with MS in the postpartum period had especially high risk of
 postpartum depression. Women with MS symptom onset within 5 years after
 pregnancy had increased risk of both depression and anxiety during
 pregnancy, whereas women with more than 5 years until symptom onset did
 not. Conclusion: Women diagnosed with MS have increased risk of
 perinatal depression. Women with MS symptom onset within 5 years after
 pregnancy have increased risk of both depression and anxiety during
 pregnancy.
DOI: 10.5061/dryad.12jm63xx6
title: Elevated temperature increases genome-wide selection on de novo mutations

description: Adaptation in new environments depends on the amount of genetic variation
 available for evolution, and the efficacy by which natural selection
 discriminates among this variation. However, whether some ecological
 factors reveal more genetic variation, or impose stronger selection
 pressures than others, is typically not known. Here, we apply enzyme
 kinetic theory to show that rising global temperatures are predicted to
 intensify natural selection throughout the genome by increasing the
 effects of DNA sequence variation on protein stability. We test this
 prediction by i) estimating temperature-dependent fitness effects of
 induced mutations in seed beetles adapted to ancestral or elevated
 temperature, ii) calculate 100 paired selection estimates on mutations in
 benign versus stressful environments from unicellular and multicellular
 organisms. Environmental stress per se did not increase mean selection on
 de novo mutation, suggesting that the cost of adaptation does not
 generally increase in new ecological settings to which the organism is
 maladapted. However, elevated temperature increased the mean strength of
 selection on genome-wide polymorphism, signified by increases in both
 mutation load and mutational variance in fitness. These results have
 important implications for genetic diversity gradients and the rate and
 repeatability of evolution under climate change.
description: Data collected in standard laboratory settings (Uppsala
 University, Sweden), as described in original publication
description: T = temperature adapted populations (evolved at 36 degrees
 Celsius) C = Control populations (evolved at benign 29
 degrees Celsius)
DOI: 10.5061/dryad.vx0k6djqq
title: Population structure of Rosa spinosissima L. on the Frisian Islands and introgression from cultivated material

description: Rosa spinosissima L. is part of the highly dynamic coastal habitat of the
 Wadden Sea, between the coast of northwestern continental Europe and the
 Frisian Islands. Plants of this species grow clonally via root suckers to
 form large patches, which stabilize dunes and help to protect the islands
 and used for this purpose locally on the island Sylt. Rosa spinosissima
 plants are affected by both water and wind in their harsh environment, and
 are threatened by human impact via habitat destruction and introduction of
 foreign species. In these northern parts of its range R. spinosissima is
 categorized as endangered. The population structure of R. spinosissima was
 investigated using ten microsatellite loci and 195 individuals of Frisian
 Island populations and European coastal continental samples. DAPC, Kmeans
 and Structure analyses were conducted to study the genetic composition and
 integrity of these natural populations relative to cultivated and nursery
 material mostly consisting of central continental genotypes. The DAPC and
 Structure analyses differentiated populations of the Frisian Islands
 between each other and separated them from nursery samples, but some
 natural populations showing an impact of nursery and cultivated genotypes.
 In addition, some clonal patches of R. spinosissima were detected. Our
 results show that the natural Frisian Island populations of R.
 spinosissima are threatened by the introduction of nonadaptive genotypes
 into the gene pool.
DOI: 10.6076/d17g66
title: Amplicon sequence variant tables of Donax gouldii microbiomes from Scripps Pier, La Jolla, CA, USA

description: Predicting how populations and communities of organisms will respond to
 anthropogenic change is of paramount concern in ecology today. For
 communities of microorganisms, however, these predictions remain
 challenging, primarily due to data limitations. Information about
 long-term dynamics of host-associated microbial communities, in
 particular, are lacking. In this study, we use well-preserved and freshly
 collected samples of soft tissue from a marine bivalve
 host, Donax gouldii, at a single site to
 quantify the diversity and composition of its microbiome over a
 decadal timescale. Site-level measurements of temperature, salinity and
 chlorophyll a allowed us to test how the microbiome of
 this species responded to two natural experiments – a seasonal increase in
 temperature and a phytoplankton bloom. Our results show
 that ethanol-preserved tissue can provide
 high-resolution information about temporal trends in compositions of
 host-associated microbial communities. Specifically, we found that the
 richness of amplicon sequence variants (ASVs) associated with D.
 gouldii did not change significantly over time despite
 increases in water temperature (+1.6°C due to seasonal
 change) and chlorophyll a concentration (more
 than nine-fold). The phylogenetic composition of the communities, on the
 other hand, varied significantly between all collection years, with only
 six ASVs persisting over our sampling period. Overall, these results
 suggest that the diversity of microbial taxa associated with D.
 gouldii has remained stable over time and in response to seasonal
 environmental change over the course of more than a decade, but such
 stability is underlain by substantial turnover in the composition of the
 microbiome.
DOI: 10.5061/dryad.7m0cfxpss
title: What drives study-dependent differences in distance-decay relationships of microbial communities?

description: Aim: Ecological communities that exist closer together in space are
 generally more compositionally similar than those far apart, as defined by
 the distance-decay of similarity relationship. However, recent research
 has revealed substantial variability in the distance-decay relationships
 of microbial communities between studies of different taxonomic groups,
 ecosystems, spatial scales, as well as between those using different
 molecular methodologies (e.g. high-throughput sequencing versus molecular
 fingerprinting). Here, we test how these factors influence the strength of
 microbial distance-decay relationships, to draw generalisations about how
 microbial β-diversity scales with space. Location: Global. Time period:
 Studies published between 2005-2019 (inclusive). Major taxa studied:
 Bacteria, Archaea, and microbial Eukarya. Methods: We conducted a
 meta-analysis of microbial distance-decay relationships, using the Mantel
 correlation coefficient as a measure of the strength of distance-decay
 relationships. Our final dataset consisted of 452 data points, varying in
 environmental/ecological context or methodological approaches, and used
 linear models to test the effects of each variable. Results: Both
 ecological and methodological factors had significant impacts on the
 strength of microbial distance-decay relationships. Specifically, the
 strength of these relationships varied between environments and habitats,
 with soils showing significantly weaker distance-decay relationships than
 other habitats, whilst increasing spatial extents had no effect.
 Methodological factors such as sequencing depth were positively related to
 the strength of distance-decay relationships, and choice of dissimilarity
 metric was also important, with phylogenetic metrics generally giving
 weaker distance-decay relationships than binary or abundance-based
 indices. Main conclusions: We conclude that widely studied microbial
 biogeographic patterns, such as the distance-decay relationship, vary by
 ecological context but are primarily distorted by methodological choices.
 Consequently, we suggest that by linking methodological approaches
 appropriately to the ecological context of a study, we can progress
 towards generalisable biogeographic relationships in microbial ecology.
description: Please see associated manuscript for all relevent details about
 dataset collection.
description: Missing values are coded as NA.
DOI: 10.34740/kaggle/dsv/14645097
title: Ethereum Price Data Binance API (2017–Now)
DOI: 10.5061/dryad.sxksn0324
title: Phenotype data, genotype input files, and scripts related to adaptation in wild house mice from Western North America

description: Parallel changes in genotype and phenotype in response to similar
 selection pressures in different populations provide compelling evidence
 of adaptation. House mice (Mus musculus domesticus) have recently
 colonized North America and are found in a wide range of environments.
 Here we measure phenotypic and genotypic differentiation among house mice
 from five populations sampled across 21° of latitude in western North
 America, and we compare our results to a parallel latitudinal cline in
 eastern North America. First, we show that mice are genetically
 differentiated between transects, indicating that they have independently
 colonized similar environments in eastern and western North
 America.  Next, we find genetically-based differences in body
 weight and nest building behavior between mice from the ends of the
 western transect which mirror differences seen in the eastern transect,
 demonstrating parallel phenotypic change.  We then conduct
 genome-wide scans for selection and a genome-wide association study to
 identify targets of selection and candidate genes for body
 weight.  We find some genomic signatures that are unique to each
 transect, indicating population-specific responses to selection. However,
 there is significant overlap between genes under selection in eastern and
 western house mouse transects, providing evidence of parallel genetic
 evolution in response to similar selection pressures across North America.
description: Genotype and phenotype data was collected for 50 house mice (Mus
 musculus domesticus) from 5 populations across 21 degrees of latitude
 between Tucson, AZ, USA and Edmonton, AB, CAN. Whole exomes were sequenced
 for each individual and phenotypic data such as bodyweight, length, coat
 coloar brightness etc was taken. In addition we raised individuals from
 the Tucson and Edmonton populations for &gt;5 generations in the lab
 and then measured body weight and behavioral phenotypes such as nest
 building in a common environment to test for genetic differences in these
 traits. Exome wide selection analysis was performed using the program LFMM
 and a genome wide associatoin analysis on body weight was performed using
 the program GEMMA.
description: Please see Read Me file for more info on the dataset.
DOI: 10.5061/dryad.ksn02v736
title: Is the age of plant communities predicted by the age, stability and soil composition of the underlying landscapes? An investigation of OCBILs

description: Old, climatically buffered, infertile landscapes (OCBILs) have been
 hypothesized to harbour an elevated number of persistent plant lineages
 and are predicted to occur across different parts of the globe,
 interspersed with other types of landscapes. We tested whether the mean
 age of a plant community is associated with occurrence on OCBILs, as
 predicted by climatic stability and poor soil environments. Using
 digitized occurrence data for seed plants occurring in Australia (7033
 species), sub-Saharan Africa (3990 species) and South America (44 482
 species), regions that comprise commonly investigated OCBILs (Southwestern
 Australian Floristic Region, Greater Cape Floristic Region and campos
 rupestres), and phylogenies pruned to match the species occurrences, we
 tested for associations between environmental data (current climate, soil
 composition, elevation and climatic stability) and two novel metrics
 developed here that capture the age of a community (mean tip length and
 mean node height). Our results indicate that plant community ages are
 influenced by a combination of multiple environmental predictors that vary
 globally; we did not find statistically strong associations between the
 environments of OCBIL areas and community age, in contrast to the
 prediction for these landscapes. The Cape Floristic Region was the only
 OCBIL that showed a significant, although not strong, overlap with old
 communities.
description: This dataset was collected from two main sources, GBIF and
 iDigBio. We downloaded occurrences for all plant species within South
 America, Australia and Sub-Saharan Africa. The data was processed using
 python and R scripts available at
 https://github.com/biotaphy/projects/tree/master/OCBILS/code. You can also
 find further information, with detailed explanations about the data
 download and processing at
 https://biotaphy.github.io/projects/ocbils.  
description: For further information, please contact the authors.