cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9830771
title: Ethical approval and informed consent reporting in ASEAN journals: a systematic review

description: <b>Background and objective:</b> Scientific publication is a way to disseminate knowledge to the scientific community. However, an article usually has very little information on how and why ethical approval (EA) and informed consent (IC) was obtained, which can make it very difficult for a reader to evaluate the ethical validity of the study. While many internationally recognized journals and publishers have already adopted a high EA/IC reporting standard, many journals still fail to do so. The aim of this study was to explore the EA/IC reporting standards, as well as their implementation, of the Association of Southeastern Asian Nation (ASEAN) member journals. <b>Methods:</b> A literature search was performed in PubMed for articles that were published in journals from ASEAN member states in 2016. The articles were then reviewed, categorized into study types, and given two scores—one for their EA statement and one for their IC statement—ranging from 0–4. A list of journals was compiled from the articles retrieved and their instructions to authors regarding EA/IC statements were scored on a scale of 0–2. The data was statistically analyzed using Chi-square test (2-sided) with SPSS (version 21) with <i>p</i>-value &lt; .05 being considered statistically significant. <b>Results:</b> While a high proportion of articles adequately reported EA, many failed to report IC. Journals with better EA and IC instruction scores had a higher percentage of articles that adequately reported EA/IC. There were significant relationships between EA/IC statement scores and journals’ instructions scores (EA: <i>p</i> = .002; IC: <i>p</i> = .019). <b>Conclusions:</b> There may be a need for journals to play key roles in advocating the importance of reporting EA and IC by strictly enforcing high EA/IC reporting standards and refusing the publication of articles that fail to comply.
DOI: 10.6084/m9.figshare.9830771.v1
title: Ethical approval and informed consent reporting in ASEAN journals: a systematic review

description: <b>Background and objective:</b> Scientific publication is a way to disseminate knowledge to the scientific community. However, an article usually has very little information on how and why ethical approval (EA) and informed consent (IC) was obtained, which can make it very difficult for a reader to evaluate the ethical validity of the study. While many internationally recognized journals and publishers have already adopted a high EA/IC reporting standard, many journals still fail to do so. The aim of this study was to explore the EA/IC reporting standards, as well as their implementation, of the Association of Southeastern Asian Nation (ASEAN) member journals. <b>Methods:</b> A literature search was performed in PubMed for articles that were published in journals from ASEAN member states in 2016. The articles were then reviewed, categorized into study types, and given two scores—one for their EA statement and one for their IC statement—ranging from 0–4. A list of journals was compiled from the articles retrieved and their instructions to authors regarding EA/IC statements were scored on a scale of 0–2. The data was statistically analyzed using Chi-square test (2-sided) with SPSS (version 21) with <i>p</i>-value &lt; .05 being considered statistically significant. <b>Results:</b> While a high proportion of articles adequately reported EA, many failed to report IC. Journals with better EA and IC instruction scores had a higher percentage of articles that adequately reported EA/IC. There were significant relationships between EA/IC statement scores and journals’ instructions scores (EA: <i>p</i> = .002; IC: <i>p</i> = .019). <b>Conclusions:</b> There may be a need for journals to play key roles in advocating the importance of reporting EA and IC by strictly enforcing high EA/IC reporting standards and refusing the publication of articles that fail to comply.
DOI: 10.6084/m9.figshare.9830813.v1
title: dat_random...anSim.RDs from Distinct colours in the ‘synesthetic colour palette’

description: Simulation of random Eagleman color picking (R)
DOI: 10.6084/m9.figshare.9830498
title: A facile approach to 6-amino-2<i>H</i>-pyrano[2,3-g]isoquinolin-2-ones <i>via</i> a sequential Sonogashira coupling of 6-cyanoumbelliferone triflate and annulations with amines

description: Palladium-catalyzed synthesis of 2<i>H</i>-pyrano[2,3-<i>g</i>]isoquinolinones have been described from easily accessible precursor 6-cyanoumbelliferone triflate <i>via</i> sequential of Sonogashira coupling and the following annulations with several primary alkylamines under basic conditions The so obtained 6-propargylamino-2<i>H</i>-pyrano[2,3-<i>g</i>]isoquinolinones were involved in the CuAAC reaction with 2-azidobenzoic acid for obtaining 2<i>H</i>-pyrano[2,3-<i>g</i>]isoquinoline-benzoic acid hybrid compounds containing a 1,2,3-triazole linker.
DOI: 10.6084/m9.figshare.9830498.v1
title: A facile approach to 6-amino-2<i>H</i>-pyrano[2,3-g]isoquinolin-2-ones <i>via</i> a sequential Sonogashira coupling of 6-cyanoumbelliferone triflate and annulations with amines

description: Palladium-catalyzed synthesis of 2<i>H</i>-pyrano[2,3-<i>g</i>]isoquinolinones have been described from easily accessible precursor 6-cyanoumbelliferone triflate <i>via</i> sequential of Sonogashira coupling and the following annulations with several primary alkylamines under basic conditions The so obtained 6-propargylamino-2<i>H</i>-pyrano[2,3-<i>g</i>]isoquinolinones were involved in the CuAAC reaction with 2-azidobenzoic acid for obtaining 2<i>H</i>-pyrano[2,3-<i>g</i>]isoquinoline-benzoic acid hybrid compounds containing a 1,2,3-triazole linker.
DOI: 10.6084/m9.figshare.9830264
title: Additional file 3: of Determinants of intentions to monitor antihypertensive medication adherence in Irish community pharmacy: a factorial survey

description: Sample size. Detailed description of procedure to estimate sample size for the survey (ZIP 213 kb)
DOI: 10.6084/m9.figshare.9830264.v1
title: Additional file 3: of Determinants of intentions to monitor antihypertensive medication adherence in Irish community pharmacy: a factorial survey

description: Sample size. Detailed description of procedure to estimate sample size for the survey (ZIP 213 kb)
DOI: 10.6084/m9.figshare.9830159
title: Additional file 3: of A systematic sequencing-based approach for microbial contaminant detection and functional inference

description: Table S1. List of 11 genera of 291 reversion-test runs showing over 5% FDR level. Table S2. List of genera accidentally found in the reversion tests with different Bowtie2 parameters. Table S3. Host-microbe chimeric reads overlapped with intergenic or host gene body regions. Table S4. List of spike-in microbes. (XLSX 134 kb)
DOI: 10.6084/m9.figshare.9830162
title: Additional file 7: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S7. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB3 Î˛1 domain. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9830156
title: Additional file 6: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S6. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB1 Î˛1 domain. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9830159.v1
title: Additional file 3: of A systematic sequencing-based approach for microbial contaminant detection and functional inference

description: Table S1. List of 11 genera of 291 reversion-test runs showing over 5% FDR level. Table S2. List of genera accidentally found in the reversion tests with different Bowtie2 parameters. Table S3. Host-microbe chimeric reads overlapped with intergenic or host gene body regions. Table S4. List of spike-in microbes. (XLSX 134 kb)
DOI: 10.6084/m9.figshare.9830162.v1
title: Additional file 7: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S7. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB3 Î˛1 domain. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9830150
title: Additional file 5: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S5. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB3 Î˛1 domain. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9830156.v1
title: Additional file 6: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S6. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB1 Î˛1 domain. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9830144
title: Additional file 4: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S4. Summary of models that were used to discover the signature of selection across codons of Rhsi-DAB1 Î˛3 domain. Data were from six models and comprise the logarithm of the likelihood (lnL), codons showing the signature of positive selection and number of parameters estimated in the model. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9830135
title: Additional file 2: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S2. Summary of models that were used to discover the signature of selection across codons of Rhsi-DAB1 Î˛1 domain. Data were from six models and comprise the logarithm of the likelihood (lnL), codons showing the signature of positive selection and number of parameters estimated in the model. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9830138
title: Additional file 3: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S3. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB1 Î˛1 domain. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9830135.v1
title: Additional file 2: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S2. Summary of models that were used to discover the signature of selection across codons of Rhsi-DAB1 Î˛1 domain. Data were from six models and comprise the logarithm of the likelihood (lnL), codons showing the signature of positive selection and number of parameters estimated in the model. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9830144.v1
title: Additional file 4: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S4. Summary of models that were used to discover the signature of selection across codons of Rhsi-DAB1 Î˛3 domain. Data were from six models and comprise the logarithm of the likelihood (lnL), codons showing the signature of positive selection and number of parameters estimated in the model. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.9830150.v1
title: Additional file 5: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S5. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB3 Î˛1 domain. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9830129
title: Additional file 1: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S1. The information of 44 vertebrate species used as outgroup in the BI tree phylogenetic analyses. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9830132
title: Additional file 7 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: Ribosomal RNA sequences used to filter reads. (FA 20 kb)
DOI: 10.6084/m9.figshare.9830123
title: Additional file 6 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: Sequences and characteristics of metallothionein-like transcripts. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9830129.v1
title: Additional file 1: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S1. The information of 44 vertebrate species used as outgroup in the BI tree phylogenetic analyses. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.9830138.v1
title: Additional file 3: of Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination

description: Table S3. The likelihood ratio tests (LRT) performed to verify the signature of positive selection in each nested codon-based model comparison for Rhsi-DAB1 Î˛1 domain. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9830123.v1
title: Additional file 6 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: Sequences and characteristics of metallothionein-like transcripts. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9830117
title: Additional file 5 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: Comparison of transcripts differentially expressed in response to temperature and/or cadmium treatments. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.9830132.v1
title: Additional file 7 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: Ribosomal RNA sequences used to filter reads. (FA 20 kb)
DOI: 10.6084/m9.figshare.9830111
title: Additional file 4 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: GO terms overrepresented in transcripts that were differentially expressed in response to elevated temperature or cadmium. For explanations of the column names please see the caption for Additional file 2. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.9830117.v1
title: Additional file 5 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: Comparison of transcripts differentially expressed in response to temperature and/or cadmium treatments. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.9830111.v1
title: Additional file 4 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: GO terms overrepresented in transcripts that were differentially expressed in response to elevated temperature or cadmium. For explanations of the column names please see the caption for Additional file 2. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.9830096
title: Additional file 2 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: GO terms overrepresented in transcripts that were differentially expressed between species. Terms that are robust regardless of the assembly used as a reference are shown in bold. Annotated: the number of transcripts annotated with the corresponding GO term. Significant: the observed number of DE transcripts annotated with the corresponding GO term. Expected: the expected number of DE transcripts. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.9830102
title: Additional file 3 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: List of transcripts that were differentially expressed in response to elevated temperature or cadmium. (XLSX 236 kb)
DOI: 10.6084/m9.figshare.9830102.v1
title: Additional file 3 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: List of transcripts that were differentially expressed in response to elevated temperature or cadmium. (XLSX 236 kb)
DOI: 10.6084/m9.figshare.9830096.v1
title: Additional file 2 of Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

description: GO terms overrepresented in transcripts that were differentially expressed between species. Terms that are robust regardless of the assembly used as a reference are shown in bold. Annotated: the number of transcripts annotated with the corresponding GO term. Significant: the observed number of DE transcripts annotated with the corresponding GO term. Expected: the expected number of DE transcripts. (XLSX 176 kb)
DOI: 10.6084/m9.figshare.9830012
title: Additional file 17: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 7. Longitudinal profiles of microbial community composition and immune markers. (HTML 4520 kb)
DOI: 10.6084/m9.figshare.9830006
title: Additional file 16: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 6. Clustering of samples into Community State Types (CSTs) based on Jenson-Shannon divergence. (HTML 2338 kb)
DOI: 10.6084/m9.figshare.9830012.v1
title: Additional file 17: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 7. Longitudinal profiles of microbial community composition and immune markers. (HTML 4520 kb)
DOI: 10.6084/m9.figshare.9830000
title: Additional file 15: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 5. Variable selection and multivariate analyses of immune parameters and intestinal bacterial taxa in HSCT patients. (HTML 2214 kb)
DOI: 10.6084/m9.figshare.9829994
title: Additional file 14: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 4. Correlations between immune markers, immune cell counts, and outcomes in HSCT patients. (HTML 1238 kb)
DOI: 10.6084/m9.figshare.9830006.v1
title: Additional file 16: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 6. Clustering of samples into Community State Types (CSTs) based on Jenson-Shannon divergence. (HTML 2338 kb)
DOI: 10.6084/m9.figshare.9829988
title: Additional file 13: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 3. Temporal patterns of immune markers and immune cells in HSCT patients. (HTML 1457 kb)
DOI: 10.6084/m9.figshare.9830000.v1
title: Additional file 15: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 5. Variable selection and multivariate analyses of immune parameters and intestinal bacterial taxa in HSCT patients. (HTML 2214 kb)
DOI: 10.6084/m9.figshare.9829994.v1
title: Additional file 14: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 4. Correlations between immune markers, immune cell counts, and outcomes in HSCT patients. (HTML 1238 kb)
DOI: 10.6084/m9.figshare.9829982
title: Additional file 12: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 2. Bacterial alpha-diversity over time and rank abundance curve for the gut microbiome of HSCT patients. (HTML 1461 kb)
DOI: 10.6084/m9.figshare.9829988.v1
title: Additional file 13: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 3. Temporal patterns of immune markers and immune cells in HSCT patients. (HTML 1457 kb)
DOI: 10.6084/m9.figshare.9829976
title: Additional file 11: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 1. Data preparation, filtering and transformation. (HTML 2337 kb)
DOI: 10.6084/m9.figshare.9829982.v1
title: Additional file 12: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 2. Bacterial alpha-diversity over time and rank abundance curve for the gut microbiome of HSCT patients. (HTML 1461 kb)
DOI: 10.6084/m9.figshare.9829976.v1
title: Additional file 11: of Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation

description: R data analysis report 1. Data preparation, filtering and transformation. (HTML 2337 kb)
DOI: 10.6084/m9.figshare.9829946
title: Additional file 6: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S6. The genes inside the LD region of the most significant SNP detected in the qL GWAS (XLSX 112 kb)
DOI: 10.6084/m9.figshare.9829946.v1
title: Additional file 6: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S6. The genes inside the LD region of the most significant SNP detected in the qL GWAS (XLSX 112 kb)
DOI: 10.6084/m9.figshare.9829940
title: Additional file 5: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S5. The genes inside the LD region of the most significant SNP detected in the F0 GWAS (XLSX 75 kb)
DOI: 10.6084/m9.figshare.9829940.v1
title: Additional file 5: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S5. The genes inside the LD region of the most significant SNP detected in the F0 GWAS (XLSX 75 kb)
DOI: 10.6084/m9.figshare.9829922
title: Additional file 2: of Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency

description: Table S2. The quantum yield calculated from the ratio of treatment to control (T/C) values of each parameter in eight varieties (XLSX 14 kb)