cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5768050
title: Global estimates of marine gross primary production based on machine‐learning upscaling of field observations

description: 4 variables (excluding dimension variables): double GPP_LD_MLD_RF[Lon,Lat,Month] <br> units: mmol O2 m-2 d-1<br> fill value: NaN<br> long_name: Monthly mixed-layer integration of gross primary production trained from the<br> dataset determined by the light-dark bottle incubation using Random Forest<br> algorithm<br> coordinates: [Longitude, Latitude Month] double GPP_LD_ZEU_RF[Lon,Lat,Month] units: mmol O2 m-2 d-1<br> fill value: NaN<br> long_name: Monthly euphotic-zone integration of gross primary production trained from<br> the dataset determined by the light-dark bottle incubation using Random<br> Forest algorithm<br> coordinates: [Longitude, Latitude Month] double GPP_Triple_MLD_RF[Lon,Lat,Month] <br> units: mmol mmol O2 m-2 d-1<br> fillvalue: NaN<br> long_name: Monthly mixed-layer integration of gross primary production trained from<br> the dataset determined by the triple isotopes of dissolved oxygen using<br> Random Forest algorithm<br> coordinates: [Longitude, Latitude Month]<br> <br> double GPP_Triple_ZEU_RF[Lon,Lat,Month] <br> units: mmol O2 m-2 d-1<br> fill value: NaN<br> long_name: Monthly euphotic-zone integration of gross primary production trained from<br> the dataset determined by the triple isotopes of dissolved oxygen using<br> Random Forest algorithm 3 dimensions: Lon Size:181<br> units: degree_north<br> long_name: Longitude Lat Size:91<br> units: degree_east<br> long_name: Latitude Month Size:13<br> units: Jan, Feb, Mar, Apr, May, Jun, Jul, Aug, Sep, Oct, Nov, Dec, Annuual_mean<br> long_name: Month <br> Author: Yibin Huang & Nicolas Cassar<br> Correspond: nicolas.cassar@duke.edu<br> <br> Request_for_citation: If you use these data in publications or presentations, please cite: Huang,<br> Y., Nicholson, D., Huang, B., & Cassar, N. (2021). Global estimates of<br> marine gross primary production based on machine‐learning upscaling of<br> field observations. Global Biogeochemical Cycles, 35, e2020GB006718.<br> https://doi.org/10.1029/2020GB006718<br> <br> Creation date: Dec/6th/2021
description: Fixed issues: 1) Identical values in "GPP_LD_MLD" and "GPP_Triple_MLD" 2) Missing values in the "GPP_Triple_Zeu" variable at longitude grid of "0°"
DOI: 10.5281/zenodo.4455882
title: Global estimates of marine gross primary production based on machine‐learning upscaling of field observations

description: 4 variables (excluding dimension variables): double GPP_LD_MLD_RF[Lon,Lat,Month] <br> units: mmol O2 m-2 d-1<br> fill value: NaN<br> long_name: Monthly mixed-layer integration of gross primary production trained from the<br> dataset determined by the light-dark bottle incubation using Random Forest<br> algorithm<br> coordinates: [Longitude, Latitude Month] double GPP_LD_ZEU_RF[Lon,Lat,Month] units: mmol O2 m-2 d-1<br> fill value: NaN<br> long_name: Monthly euphotic-zone integration of gross primary production trained from<br> the dataset determined by the light-dark bottle incubation using Random<br> Forest algorithm<br> coordinates: [Longitude, Latitude Month] double GPP_Triple_MLD_RF[Lon,Lat,Month] <br> units: mmol mmol O2 m-2 d-1<br> fillvalue: NaN<br> long_name: Monthly mixed-layer integration of gross primary production trained from<br> the dataset determined by the triple isotopes of dissolved oxygen using<br> Random Forest algorithm<br> coordinates: [Longitude, Latitude Month]<br> <br> double GPP_Triple_ZEU_RF[Lon,Lat,Month] <br> units: mmol O2 m-2 d-1<br> fill value: NaN<br> long_name: Monthly euphotic-zone integration of gross primary production trained from<br> the dataset determined by the triple isotopes of dissolved oxygen using<br> Random Forest algorithm 3 dimensions: Lon Size:181<br> units: degree_north<br> long_name: Longitude Lat Size:91<br> units: degree_east<br> long_name: Latitude Month Size:13<br> units: Jan, Feb, Mar, Apr, May, Jun, Jul, Aug, Sep, Oct, Nov, Dec, Annuual_mean<br> long_name: Month <br> Author: Yibin Huang & Nicolas Cassar<br> Correspond: nicolas.cassar@duke.edu<br> <br> Request_for_citation: If you use these data in publications or presentations, please cite: Huang,<br> Y., Nicholson, D., Huang, B., & Cassar, N. (2021). Global estimates of<br> marine gross primary production based on machine‐learning upscaling of<br> field observations. Global Biogeochemical Cycles, 35, e2020GB006718.<br> https://doi.org/10.1029/2020GB006718<br> <br> Creation date: Dec/6th/2021
description: Fixed issues: 1) Identical values in "GPP_LD_MLD" and "GPP_Triple_MLD" 2) Missing values in the "GPP_Triple_Zeu" variable at longitude grid of "0°"
DOI: 10.6084/m9.figshare.9734105.v1
title: SMSNet's training datasets (WCU-MS-BEST, DeepNovo, ProteomeTools)

description: Training datasets for SMSNet for comparison with DeepNovo (Figure 2 in https://www.biorxiv.org/content/10.1101/667527v1). In .csv files, each row contain information of a peptide-spectrum match. Files ending with _tgt.csv contain the peptide amino acid sequence in the same ordering as the corresponding .csv files. These _tgt.csv files are provided for direct compatibility with SMSNet's training script (https://github.com/korrawe/SMSNet).<br>For the WCU-MS-BEST dataset, each row of the .csv files contains peptide sequence, charge state, observed m/z, PEP score (from MaxQuant's evidence output file), Andromeda search score (from MaxQuant's evidence output file), and the observed MS/MS peaks.<br>For the DeepNovo and ProteomeTools datasets, each row of the .csv files contains peptide sequence, charge state, observed m/z, and the observed MS/MS peaks.<br>DeepNovo dataset consists of peptides identified through high-resolution MS/MS spectra on Q Exactive instruments as described in the DeepNovo article (Tran <i>et al</i>. PNAS 114:8247-8252, 2017). PRIDE accessions for these experiments are PXD005025, PXD004948, PXD004325, PXD004565,PXD004536, PXD004947, PXD003868, PXD004467, and PXD004424.<br>ProteomeTools dataset consists of synthetic peptides identified through high-resolution MS/MS spectra on Orbitrap Fusion Lumos as described in the ProteomeTools article (Zolg <i>et al</i>. Nat Methods 14:259-262, 2017).<br>All datasets have been split into training, validation, and test sets. Peptides that were identified through multiple MS/MS spectra were grouped so that all identifications appear in the same set. The validation and test sets were further de-duplicated so that they contain only one MS/MS spectrum for each unique peptide.
DOI: 10.21233/p80x-ar79
title: Hotel Plaza [11LS36] macroinvertebrate dataset

description: Raw data for the Hotel Plaza [11LS36] macroinvertebrate dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.48324/dandi.000045/0.211209.1412
title: IBL behavioral data

description: This dataset is a result of a multi-institution, cross country collaboration of labs, called International Brain Laboratory conducting standardized experiments on decision-making in mice. In the experiment, mice are shown a visual grating on screen with varying levels of contrast, and they are trained to rotate a wheel to move the on-screen stimulus from either side of their visual field to the center. These NWB files contain datasets corresponding to this wheel movement, camera footage of mice and information about the visual stimulus at every trial. 
Paper: 
Aguillon, V., Angelaki, D., Bayer, H. M., Bonacchi, N., Carandini, M., Cazettes, F., Churchland, A. K., Chapuis, G., Dan, Y., Dewitt, E., Faulkner, M., Hamish, F., Haetzel, L., Hausser, M., Hofer, S., Hu, F., Khanal, A., Krasniak, C., Laranjeira, I., … Zador, A. (2020). A standardized and reproducible method to measure decision-making in mice. BioRxiv, 2020.01.17.909838. https://doi.org/10.1101/2020.01.17.909838
DOI: 10.48324/dandi.000045/0.211209.1413
title: IBL behavioral data

description: This dataset is a result of a multi-institution, cross country collaboration of labs, called International Brain Laboratory conducting standardized experiments on decision-making in mice. In the experiment, mice are shown a visual grating on screen with varying levels of contrast, and they are trained to rotate a wheel to move the on-screen stimulus from either side of their visual field to the center. These NWB files contain datasets corresponding to this wheel movement, camera footage of mice and information about the visual stimulus at every trial. 
Paper: 
Aguillon, V., Angelaki, D., Bayer, H. M., Bonacchi, N., Carandini, M., Cazettes, F., Churchland, A. K., Chapuis, G., Dan, Y., Dewitt, E., Faulkner, M., Hamish, F., Haetzel, L., Hausser, M., Hofer, S., Hu, F., Khanal, A., Krasniak, C., Laranjeira, I., … Zador, A. (2020). A standardized and reproducible method to measure decision-making in mice. BioRxiv, 2020.01.17.909838. https://doi.org/10.1101/2020.01.17.909838
DOI: 10.21233/pz09-qc44
title: Hippie 2 Pond pollen surface sample dataset

description: Raw data for the Hippie 2 Pond pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/fhgj-g950
title: East Stump Lake pollen surface sample dataset

description: Raw data for the East Stump Lake pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5281/zenodo.5770254
title: Efficacy of bracing in early infantile scoliosis: a 5-year prospective cohort shows that idiopathic respond better than secondary-2021 SOSORT award winner

description: Dataset from the paper: Efficacy of bracing in early infantile scoliosis: a 5-year prospective cohort shows that idiopathic respond better than secondary-2021 SOSORT award winner. Eur Spine J. 2021 Dec;30(12):3498-3508. doi: 10.1007/s00586-021-06889-y. Epub 2021 Jun 6. PMID: 34091763. Abstract <strong>Purpose: </strong>In conservative early onset scoliosis treatment, interest in bracing is growing because repeated general anaesthesia (required by casting) has been questioned for possible brain damages. We aimed to check the results in the medium term of bracing, comparing idiopathic (IIS) to secondary (SIS) infantile scoliosis. <strong>Methods: </strong>We performed a retrospective study in a consecutive prospective cohort. Inclusion criteria were: discovery of scoliosis and bracing below age 3; exclusion criteria: previous spine surgery, less than three consultations. We considered the following results: full (&lt; 20° Cobb) and partial (&lt; 30°) success; hold-up (progression &lt; 5° but curve &gt; 29°); partial (progression &gt; 5°) and full (fusion) failure; statistics: ANOVA for repeated measures; linear mixed effect model with Cobb angle (dependent), time and diagnosis (independent) variables. <strong>Results: </strong>We included 34 infants (16 IIS and 18 SIS) of age 1·10 ± 0·10 (years·months), 44 ± 17° curves, 27 ± 10° rib vertebral angle difference, average observation 5·05 ± 3·03 years. We found progressive improvement of IIS and stability of SIS patients. Six IIS (37.5%) and one SIS (6%) reached brace weaning before puberty with 13 ± 5° (improvement 61 ± 15%, p &lt; 0.001), after 4·11 ± 3·07 years of treatment. Three patients were fused, one IIS (6%) and two SIS (11%). Two IIS patients also reached end-of-growth with 18° (start 40° at 1·03 years) and 20° (start 32° at 2·12 years), respectively. <strong>Conclusion: </strong>Bracing shows promising results in the medium term for high-degree IIS, with very few hold-ups (19%) and failures (12%). Conversely, failures prevail for SIS (full 11%), even if the partial failure (39%) is still a time-buying strategy.
DOI: 10.5281/zenodo.5770253
title: Efficacy of bracing in early infantile scoliosis: a 5-year prospective cohort shows that idiopathic respond better than secondary-2021 SOSORT award winner

description: Dataset from the paper: Efficacy of bracing in early infantile scoliosis: a 5-year prospective cohort shows that idiopathic respond better than secondary-2021 SOSORT award winner. Eur Spine J. 2021 Dec;30(12):3498-3508. doi: 10.1007/s00586-021-06889-y. Epub 2021 Jun 6. PMID: 34091763. Abstract <strong>Purpose: </strong>In conservative early onset scoliosis treatment, interest in bracing is growing because repeated general anaesthesia (required by casting) has been questioned for possible brain damages. We aimed to check the results in the medium term of bracing, comparing idiopathic (IIS) to secondary (SIS) infantile scoliosis. <strong>Methods: </strong>We performed a retrospective study in a consecutive prospective cohort. Inclusion criteria were: discovery of scoliosis and bracing below age 3; exclusion criteria: previous spine surgery, less than three consultations. We considered the following results: full (&lt; 20° Cobb) and partial (&lt; 30°) success; hold-up (progression &lt; 5° but curve &gt; 29°); partial (progression &gt; 5°) and full (fusion) failure; statistics: ANOVA for repeated measures; linear mixed effect model with Cobb angle (dependent), time and diagnosis (independent) variables. <strong>Results: </strong>We included 34 infants (16 IIS and 18 SIS) of age 1·10 ± 0·10 (years·months), 44 ± 17° curves, 27 ± 10° rib vertebral angle difference, average observation 5·05 ± 3·03 years. We found progressive improvement of IIS and stability of SIS patients. Six IIS (37.5%) and one SIS (6%) reached brace weaning before puberty with 13 ± 5° (improvement 61 ± 15%, p &lt; 0.001), after 4·11 ± 3·07 years of treatment. Three patients were fused, one IIS (6%) and two SIS (11%). Two IIS patients also reached end-of-growth with 18° (start 40° at 1·03 years) and 20° (start 32° at 2·12 years), respectively. <strong>Conclusion: </strong>Bracing shows promising results in the medium term for high-degree IIS, with very few hold-ups (19%) and failures (12%). Conversely, failures prevail for SIS (full 11%), even if the partial failure (39%) is still a time-buying strategy.
DOI: 10.5281/zenodo.5770264
title: Supplementary Material for Ph.D. thesis: "Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing""

description: Supplementary material for Ph.D. thesis.
DOI: 10.5281/zenodo.5227414
title: Supplementary Material for Ph.D. thesis: "Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing""

description: Supplementary material for Ph.D. thesis.
DOI: 10.21233/rm15-4e58
title: China Lake Locality LACM 3569 vertebrate fauna dataset

description: Raw data for the China Lake Locality LACM 3569 vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/wggh-eg91
title: Long Valley 1 [UCMPV65076] vertebrate fauna dataset

description: Raw data for the Long Valley 1 [UCMPV65076] vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.17151194
title: Three Ampelopsis species RNA-seq raw sequence reads

description: Three Ampelopsis species RNA-seq raw sequence reads.
DOI: 10.6084/m9.figshare.17151194.v1
title: Three Ampelopsis species RNA-seq raw sequence reads

description: Three Ampelopsis species RNA-seq raw sequence reads.
DOI: 10.21233/as0d-g722
title: Chief Joseph Dam Site 45DO285 vertebrate fauna dataset

description: Raw data for the Chief Joseph Dam Site 45DO285 vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/ky76-h550
title: Grobot Grotto vertebrate fauna dataset

description: Raw data for the Grobot Grotto vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.15468/5dmnfr
title: Surveys of Afrotemperate forests yields two new freshwater crabs (Decapoda: Potamonautidae: Potamonautes MacLeay, 1838) from South Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Daniels, Savel R., Barnes, Aaron, Marais, Hannes, Gouws, Gavin (2021): Surveys of Afrotemperate forests yields two new freshwater crabs (Decapoda: Potamonautidae: Potamonautes MacLeay, 1838) from South Africa. European Journal of Taxonomy 782: 82-107, DOI: https://doi.org/10.5852/ejt.2021.782.1591, URL: http://dx.doi.org/10.5852/ejt.2021.782.1591
DOI: 10.21233/h2sw-bz97
title: Felter Hill [42Dc2] vertebrate fauna dataset

description: Raw data for the Felter Hill [42Dc2] vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/v6yc-x342
title: Navajo Reservoir Site LA 4294 vertebrate fauna dataset

description: Raw data for the Navajo Reservoir Site LA 4294 vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/4q9d-ha15
title: Valentine Village [LA 4289] vertebrate fauna dataset

description: Raw data for the Valentine Village [LA 4289] vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/2gwf-tq25
title: Bancos Village [LA 4380] vertebrate fauna dataset

description: Raw data for the Bancos Village [LA 4380] vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.15468/g6x3hp
title: Ancistrorhynchus (Orchidaceae), a new generic record for the Flora of Zambia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wightman, Nicholas, Bytebier, Benny (2021): Ancistrorhynchus (Orchidaceae), a new generic record for the Flora of Zambia. Phytotaxa 528 (1): 59-61, DOI: 10.11646/phytotaxa.528.1.6
DOI: 10.6084/m9.figshare.17152613
title: Demographics

description: A comparative study was undertaken to survey nurses working in an acute care nursing unit before and after moving to a new hospital to investigate the impact of a nursing unit designed utilizing Planetree build criteria. <br>
DOI: 10.6084/m9.figshare.17152613.v1
title: Demographics

description: A comparative study was undertaken to survey nurses working in an acute care nursing unit before and after moving to a new hospital to investigate the impact of a nursing unit designed utilizing Planetree build criteria. <br>
DOI: 10.5281/zenodo.5770269
title: Bracing adults with chronic low back pain secondary to severe scoliosis: six months results of a prospective pilot study.

description: Dataset from the paper: Bracing adults with chronic low back pain secondary to severe scoliosis: six months results of a prospective pilot study. Eur Spine J. 2021 Oct;30(10):2962-2966. doi: 10.1007/s00586-021-06808-1. Epub 2021 Mar 17. PMID: 33733328. Abstract <strong>Purpose: </strong>Adult scoliosis is sometimes associated with back pain and severe curves can progress over time. Despite scoliosis has been estimated to affect up to 68% of the population over 60, there is scant literature about conservative treatment for adult scoliosis. Recently, we tested a new brace designed to alleviate pain for adult patients with chronic pain secondary to scoliosis. The study aims to test the efficacy of a prefabricated brace in reducing pain in adult scoliosis patients. <strong>Methods: </strong>Twenty adults (age 67.8 ± 10.5, curve 61.9 ± 12.6° Cobb) with chronic low back pain (cLBP) secondary to Idiopathic Scoliosis (IS) were included. Patients were evaluated at baseline immediately before starting with the brace and after 6 months. Outcome measures were GRS, Oswestry Disability Index (ODI), Roland Morris Questionnaire (RM), COMI. The paired t test, ANOVA and Wilcoxon tests were used for statistical analysis RESULTS: At six months, worst pain, leg pain and back pain were significantly improved: from 7.15 to 5.60, from 5.65 to 4.35 and from 6.55 to 5.25 (p &lt; 0.05). Sixty-five percent of patients achieved the minimal clinically important difference of 2 points for worst pain and leg pain, 55% for back pain. RM and COMI improved (p &lt; 0.05), no differences for ODI. <strong>Conclusion: </strong>The prefabricated brace showed a significant improvement at 6 months of worst, leg and back pain in most patients in a group of adult women with IS and cLBP. The quality of life didn't change in a clinically significant way even if the patients reported satisfaction with the treatment. Trial registration number and date of registration: ClinicalTrials.gov Identifier: NCT02643290, December 31, 2015.
DOI: 10.5281/zenodo.5770268
title: Bracing adults with chronic low back pain secondary to severe scoliosis: six months results of a prospective pilot study.

description: Dataset from the paper: Bracing adults with chronic low back pain secondary to severe scoliosis: six months results of a prospective pilot study. Eur Spine J. 2021 Oct;30(10):2962-2966. doi: 10.1007/s00586-021-06808-1. Epub 2021 Mar 17. PMID: 33733328. Abstract <strong>Purpose: </strong>Adult scoliosis is sometimes associated with back pain and severe curves can progress over time. Despite scoliosis has been estimated to affect up to 68% of the population over 60, there is scant literature about conservative treatment for adult scoliosis. Recently, we tested a new brace designed to alleviate pain for adult patients with chronic pain secondary to scoliosis. The study aims to test the efficacy of a prefabricated brace in reducing pain in adult scoliosis patients. <strong>Methods: </strong>Twenty adults (age 67.8 ± 10.5, curve 61.9 ± 12.6° Cobb) with chronic low back pain (cLBP) secondary to Idiopathic Scoliosis (IS) were included. Patients were evaluated at baseline immediately before starting with the brace and after 6 months. Outcome measures were GRS, Oswestry Disability Index (ODI), Roland Morris Questionnaire (RM), COMI. The paired t test, ANOVA and Wilcoxon tests were used for statistical analysis RESULTS: At six months, worst pain, leg pain and back pain were significantly improved: from 7.15 to 5.60, from 5.65 to 4.35 and from 6.55 to 5.25 (p &lt; 0.05). Sixty-five percent of patients achieved the minimal clinically important difference of 2 points for worst pain and leg pain, 55% for back pain. RM and COMI improved (p &lt; 0.05), no differences for ODI. <strong>Conclusion: </strong>The prefabricated brace showed a significant improvement at 6 months of worst, leg and back pain in most patients in a group of adult women with IS and cLBP. The quality of life didn't change in a clinically significant way even if the patients reported satisfaction with the treatment. Trial registration number and date of registration: ClinicalTrials.gov Identifier: NCT02643290, December 31, 2015.
DOI: 10.6084/m9.figshare.17152610
title: HERD-OUTPUT

description: A comparative study was undertaken to survey nurses working in an acute care nursing unit before and after moving to a new hospital to investigate the impact of a nursing unit designed utilizing Planetree build criteria. <br>
DOI: 10.21233/03c1-0821
title: Fort Center Earthworks vertebrate fauna dataset

description: Raw data for the Fort Center Earthworks vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/s12m-cj63
title: St. Augustine vertebrate fauna dataset

description: Raw data for the St. Augustine vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/cd9r-er65
title: Vero 3 vertebrate fauna dataset

description: Raw data for the Vero 3 vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/s4sm-3r60
title: Little Salt Spring vertebrate fauna dataset

description: Raw data for the Little Salt Spring vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/ene5-yg23
title: Melton [8Al69] vertebrate fauna dataset

description: Raw data for the Melton [8Al69] vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/xfq7-2791
title: Shiners Site I [Falcon Hill Shiners Site I] [26WA205] vertebrate fauna dataset

description: Raw data for the Shiners Site I [Falcon Hill Shiners Site I] [26WA205] vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/mn9z-ez75
title: Bear Lake vertebrate fauna dataset

description: Raw data for the Bear Lake vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/wjjp-d564
title: Palmer vertebrate fauna dataset

description: Raw data for the Palmer vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.