cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17121104.v1
title: Supplementary Material for: High Prevalence and Early Onsets: Legal and Illegal Substance Use in an Urban Cohort of Young Adults in Switzerland

description: <b><i>Introduction:</i></b> Debates about the legalization of illegal substances (e.g., cannabis) continue around the globe. A key consideration in these debates is the adequate protection of young people, which could be informed by current prevalence and age-of-onset patterns. For Switzerland, such information is limited, which is particularly true for women, despite advanced political efforts to legalize cannabis. The objective of the current study was to investigate substance use prevalence rates and ages of onset in a community-representative sample of female and male young adults in Switzerland. <b><i>Methods:</i></b> Data came from the Zurich Project on the Social Development from Childhood to Adulthood (z-proso). In 2018, participants (<i>N</i> = 1,180, 50.8% females) were ∼20 years old. Lifetime and past-year use of alcohol, tobacco, cannabinoids, stimulants, hallucinogens, opioids, and benzodiazepines were assessed with an extensive substance use questionnaire. Additionally, ages of onsets of the respective substances were estimated by averaging participants’ self-reported ages of onsets from ages 13 to 20 (max. 4 assessments). <b><i>Results:</i></b> 57% of 20-year-olds had used cannabinoids, 16% stimulants, 15% opioids (mostly codeine), and 8% hallucinogens in the past year. Males had higher prevalence than females for most drugs; nevertheless, females’ prevalence rates were notably high. Legal substance use was typically initiated 1.3–2.7 years before legal selling age. Thus, almost half of the sample had consumed alcohol and tobacco by age 14. More than 40% of the total sample had smoked cannabis by age 16. Males initiated use of legal substances and cannabis earlier than females. <b><i>Discussion:</i></b> Our recent community-representative data suggested unexpectedly high levels and early onsets of substance use compared to a previous Swiss surveys and also the European average. Drug policy debates should consider urban substance use patterns when considering legalization efforts.
DOI: 10.6084/m9.figshare.17121119
title: Supplementary Material for: Induced Polyspecificity of Human Secretory Immunoglobulin A Antibodies: Is It Possible to Improve Their Ability to Bind Pathogens?

description: <b><i>Introduction:</i></b> As has been shown previously, various protein-modifying agents can change the antigen-binding properties of immunoglobulins. However, induced polyspecificity of human secretory immunoglobulin A (sIgA) has not been previously characterized in detail. <b><i>Methods:</i></b> In the present study, human secretory immunoglobulin A (IgA) was exposed to buffers with acidic pH, to free heme, or to pro-oxidative ferrous ions, and the antigen-binding behavior of the native and modified IgA to viral and bacterial antigens was compared using Western blotting and enzyme-linked immunosorbent assay. The ability of these agents to modulate the antigen-binding properties of human sIgA toward a wide range of pathogen peptides was investigated using an epitope microarray. <b><i>Results:</i></b> We have shown that acidic pH, heme, and pro-oxidative ferrous ions influenced the binding of secretory IgA in opposite directions (either increasing or decreasing); however, the strongest effect was observed when using buffers with low pH. This fraction had the highest number of affected reactivities; most of them were increased and most of the new ones were toward common pathogens. <b><i>Conclusions:</i></b> Thus, it was shown that all investigated treatments can alter to some degree the antigen-binding of secretory IgA, but acidic pH has the most potentially beneficial effect by increasing binding to a largest number of common pathogens’ antigens.
DOI: 10.6084/m9.figshare.14959515.v5
title: Data from: Biological invasions reveal how niche change affects the transferability of species distribution models

description: All data supporting the results of "Biological invasions reveal how niche change affects the transferability of species distribution models" are available in this dataset.<br>
DOI: 10.6084/m9.figshare.14959515.v6
title: Invasive_species_conserve_niche

description: Chunlong Liu, Christian Wolter, Franck Courchamp, Núria Roura-Pascual, and Jonathan M. Jeschke (2022) “Biological invasions reveal how niche change affects the transferability of species distribution models.” Ecology.<br><br>The code used for conducting all analyses, and producing the corresponding figures and tables in the main manuscript. All data supporting the results are available in Dataset S1 (Ecology_Liu_Dataset_AllData.xlsx). For more information see readme file (readme_NicheTrans.txt)
DOI: 10.6084/m9.figshare.14327252
title: scripts used in δaδi

description: Diffusion Approximations for Demographic Inference (δaδi, v.1.7.0; Gutenkunst et al., 2009) was used to estimate demographic parameters under models of pairwise divergence. We tested eight models of divergence (Fig. S1): A) no divergence (neutral, populations never diverge); B) split with no migration (divergence without gene flow); C) split with migration (divergence with gene flow that is bidirectionally symmetric, 1 migration parameter); D) split with bidirectional migration (divergence with gene flow that is bidirectionally asymmetric, 2 migration parameters); E) split with exponential population growth, no migration; F) split with exponential population growth and migration; G) secondary contact with migration (1 migration parameter); and H) secondary contact with bidirectional migration (2 migration parameters).<br><br>The neutral, split with migration, and exponential population growth models are provided in the δaδi file Demographics2D.py (as snm, splitmig, and IM, respectively). The models split with no migration, and split with exponential growth no migration are versions of the splitmig and IM models with the migration parameters set to zero. The split with bidirectional gene flow model is a custom script that is a derivative splitmig to examine asymmetric gene flow. The secondary contact model with one migration parameters (symmetric gene flow) is from Rougemont et al. (2017), and the secondary contact model with two migration parameters is a derivative of that model to account for potential asymmetry in gene flow<br><br>
DOI: 10.6084/m9.figshare.14959515.v7
title: Niche_change_affects_SDM_transferability

description: Chunlong Liu, Christian Wolter, Franck Courchamp, Núria Roura-Pascual, and Jonathan M. Jeschke (2022) “Biological invasions reveal how niche change affects the transferability of species distribution models.” Ecology.<br><br>The code used for conducting all analyses, and producing the corresponding figures and tables in the main manuscript. All data supporting the results are available in Dataset S1 (Ecology_Liu_Dataset_AllData.xlsx). For more information see readme file (readme_NicheTrans.txt)
DOI: 10.5517/ccdc.csd.cc286hww
title: CCDC 2091628: Experimental Crystal Structure Determination

description: Related Article: Jana Sendra, Efraim Reyes, Liher Prieto, Elena Fernández, Jose L. Vicario|2021|Org.Lett.|23|8738|doi:10.1021/acs.orglett.1c03190
DOI: 10.5517/ccdc.csd.cc28m6qv
title: CCDC 2103837: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6rw
title: CCDC 2103838: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6sx
title: CCDC 2103839: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6ty
title: CCDC 2103840: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6vz
title: CCDC 2103841: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6w0
title: CCDC 2103842: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6x1
title: CCDC 2103843: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6y2
title: CCDC 2103844: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.5517/ccdc.csd.cc28m6z3
title: CCDC 2103845: Experimental Crystal Structure Determination

description: Related Article: Wei-Fang Tsao, Guan-Lin Liu, Yu-Chia Su, Chu-Chieh Lin, Bao-Tsan Ko|2021|Organometallics|40|3742|doi:10.1021/acs.organomet.1c00474
DOI: 10.15151/esrf-es-541098252
title: Munich Crystallography BAG

description: The diverse groups of the Munich Crystallography BAG study a far range of subjects, reaching from structural aspects of fundamental cellular processes - such as RNA processing, protein folding and degradation, DNA repair, chromatin remodelling, enzymes - to the design of foldamers. The research groups are located at the LMU and TUM universities in Munich, at the Max-Planck-Institute of Biochemistry, Martinsried, and the Helmholtz Center, Neuherberg. Out-groups are located at the universities in Darmstadt and Ulm, Germany. The research groups use X-ray crystallography, single-particle cryo-EM, SAXS, NMR and HDX and XL-MS mass-spectrometry for structural studies.
DOI: 10.15151/esrf-es-541146233
title: Macromolecular crystallography at the Philipps University Marburg (MarBAG)

description: Located at the Philipps-University-Marburg and the Max-Planck-Institute for terrestrial Microbiology in Marburg, Germany, the MarBAG employs X-ray crystallography to answer fundamental questions involving synthesis and assembly of macromolecular machines and cellular structures (e.g. CO2-fixation pathways, flagellar biosynthesis, CRISPR-Cas Systems, cell-wall-related processes). Our analysis of the structural basis of CO2 fixation and the synthesis of the green-house gas methane will help to engineer these processes as tools in climate control. Furthermore, we are interested in plant-pathogen interactions and the function of nucleotide derived signalling molecules in cellular stress physiology and organization. Currently, a 200 keV cryo-electron microscope is being installed at the UMR to complement our efforts to structurally characterize macromolecular complexes, which do not readily crystallize.
DOI: 10.15151/esrf-es-542594680
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, National Research Council and Hospital research centres in Italy. The laboratories apply various diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes, such as crystal growth and polymer association and formation of nanostructures.
DOI: 10.6084/m9.figshare.17089196.v1
title: Marine zooplankton community analysis confirms the ecological importance of a sheltered bight along a narrow shelf exposed to the Agulhas Current.

description: Zooplankton play an essential role in marine ecosystems as the linkage between primary producers (phytoplankton) and higher trophic levels in food webs, and by forming a dynamic pool of recruits for multiple invertebrate and fish species. Zooplankton have high taxonomic diversity and abundance, and are distributed patchily in oceans, facilitated by a combination of physical processes and biological interactions. At larger spatial scales, ocean currents are key determinants of zooplankton species composition and abundance. The Agulhas Current is one of the strongest western boundary currents in the world, flowing southwestwards along the edge of a narrow, exposed shelf off eastern South Africa. A single sizable bight (KwaZulu-Natal Bight) along the coastline provides a shallow productive enclave, sheltered against strong directional flow. We used metabarcoding and community analysis of plankton collected near the surface of four cross-shelf transects in sheltered (KZN Bight) and exposed shelf habitats to test hypotheses that: species richness and relative abundance differ between sheltered- and exposed shelf areas; sub-mesoscale processes (eddies, counter-currents) retain zooplankton in the sheltered bight; and that the bight acts as a spawning and nursery area. Metabarcoding recovered much higher species richness and diversity at a finer species-level resolution than could previously be achieved with microscopy. Of the 271 species clusters recovered through metabarcoding, 63% could be attributed to species based on barcode reference databases. Species richness was dominated by crustaceans from the Malacostraca class (161 spp.), ray-finned fishes (45 spp.) and copepods (28 spp.). Connectivity analyses confirmed the retention of zooplankton in the sheltered bight by semi-permanent current circulation patterns. Ray-finned fishes had the highest relative abundance in the sheltered bight, comprising mainly of pelagic fish (<i>Scomber japonicus</i>) eggs, thus confirming the importance of the bight as a spawning area along a narrow continental shelf exposed to strong directional currents. The intersection of metabarcoding, community analysis and physical oceanography is a promising new direction for marine ecological research in the Western Indian Ocean and beyond.
DOI: 10.6084/m9.figshare.14959515
title: Niche_change_affects_SDM_transferability

description: Chunlong Liu, Christian Wolter, Franck Courchamp, Núria Roura-Pascual, and Jonathan M. Jeschke (2022) “Biological invasions reveal how niche change affects the transferability of species distribution models.” Ecology.<br><br>The code used for conducting all analyses, and producing the corresponding figures and tables in the main manuscript. All data supporting the results are available in Dataset S1 (Ecology_Liu_Dataset_AllData.xlsx). For more information see readme file (readme_NicheTrans.txt)
DOI: 10.6084/m9.figshare.14959515.v8
title: Niche_change_affects_SDM_transferability

description: Chunlong Liu, Christian Wolter, Franck Courchamp, Núria Roura-Pascual, and Jonathan M. Jeschke (2022) “Biological invasions reveal how niche change affects the transferability of species distribution models.” Ecology.<br><br>The code used for conducting all analyses, and producing the corresponding figures and tables in the main manuscript. All data supporting the results are available in Dataset S1 (Ecology_Liu_Dataset_AllData.xlsx). For more information see readme file (readme_NicheTrans.txt)
DOI: 10.20372/aau_rdr/rshuqp/rzv9rl
title: Griffiths.ppt

description: :unav
DOI: 10.20372/aau_rdr/rshuqp
title: testexampleemail

description: test dataset
DOI: 10.6084/m9.figshare.17121209
title: Research Data

description: These are basic topographic data for flood modelling in a river basin<br>
DOI: 10.21942/uva.17113355
title: VICTORY study - dataset

description: This record contains meta-data on the VICTORY study, a diagnostic test accuracy study on cellular tests for Lyme borreliosis. The full protocol can be accessed via DOI 10.1186/s12879-019-4323-6. <br>The dataset for the VICTORY study can be obtained from the principal investigator for Amsterdam UMC (prof. Joppe Hovius) on behalf of the research partners at the Radboudumc and National Institute of Public Health and the Environment (RIVM). The dataset is available upon reasonable request and subject to certain limitations. <br>Conditions include:- re-use of data for a scientifically valid and methodologically sound research project- data will only be shared for collaborative efforts, not for use by third parties only- de-identified data may not leave control Amsterdam UMC, Radbodumc or RIVM; anonymized data may also be used by a third party- contractual obligations regarding the rights of participating commercial partners are respected (e.g., prior review of intended publications)- legal rights of study participants are respected- re-use is always subject to applicable law, institutional regulations and review by the medical ethics committee, if applicable. <br>Contact with the principal investigator can be sought via lyme@amsterdamumc.nl or victory@amsterdamumc.nl.
DOI: 10.21942/uva.17113355.v1
title: VICTORY study - dataset

description: This record contains meta-data on the VICTORY study, a diagnostic test accuracy study on cellular tests for Lyme borreliosis. The full protocol can be accessed via DOI 10.1186/s12879-019-4323-6. <br>The dataset for the VICTORY study can be obtained from the principal investigator for Amsterdam UMC (prof. Joppe Hovius) on behalf of the research partners at the Radboudumc and National Institute of Public Health and the Environment (RIVM). The dataset is available upon reasonable request and subject to certain limitations. <br>Conditions include:- re-use of data for a scientifically valid and methodologically sound research project- data will only be shared for collaborative efforts, not for use by third parties only- de-identified data may not leave control Amsterdam UMC, Radbodumc or RIVM; anonymized data may also be used by a third party- contractual obligations regarding the rights of participating commercial partners are respected (e.g., prior review of intended publications)- legal rights of study participants are respected- re-use is always subject to applicable law, institutional regulations and review by the medical ethics committee, if applicable. <br>Contact with the principal investigator can be sought via lyme@amsterdamumc.nl or victory@amsterdamumc.nl.
DOI: 10.24396/ordar-93
title: Data CI chondrites Morin

description: Data of oxygen isotope in CI chondrite anhydrous silicates
DOI: 10.5445/ir/1000140477
title: Electron-momentum dependence of electron-phonon coupling underlies dramatic phonon renormalization in YNi2B2C

description: Electron-phonon coupling, i.e., the scattering of lattice vibrations by electrons and vice versa, is ubiquitous in solids and can lead to emergent ground states such as superconductivity and charge-density wave order. A broad spectral phonon line shape is often interpreted as a marker of strong electron-phonon coupling associated with Fermi surface nesting, i.e., parallel sections of the Fermi surface connected by the phonon momentum. Alternatively broad phonons are known to arise from strong atomic lattice anharmonicity. Here, we show that strong phonon broadening can occur in the absence of both Fermi surface nesting and lattice anharmonicity, if electron-phonon coupling is strongly enhanced for specific values of electron-momentum, k. We use inelastic neutron scattering, soft x-ray angle-resolved photoemission spectroscopy measurements and ab-initio lattice dynamical and electronic band structure calculations to demonstrate this scenario in the highly anisotropic tetragonal electron-phonon superconductor YNi$_2$B$_2$C. This new scenario likely applies to a wide range of compounds.
DOI: 10.5281/zenodo.5751314
title: Data of "Modulating Electric Field Distribution by Alkali Cations for CO2 Electroreduction in Strongly Acidic Medium"

description: Data of the paper "Modulating Electric Field Distribution by Alkali Cations for CO2 Electroreduction in Strongly Acidic Medium"
DOI: 10.5281/zenodo.5563164
title: Data of "Modulating Electric Field Distribution by Alkali Cations for CO2 Electroreduction in Strongly Acidic Medium"

description: Data of the paper "Modulating Electric Field Distribution by Alkali Cations for CO2 Electroreduction in Strongly Acidic Medium"
DOI: 10.6084/m9.figshare.12961970.v1
title: Supplementary Movie 3 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: OME data can be found in the dataset of figure 2, which contains the individual raw image files of the Calcium sensor time lapse image series. The combined image stack shared here was constructed from these image files.
DOI: 10.6084/m9.figshare.12961967.v1
title: Supplementary Movie 2 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: OME data can be found in the dataset of figure 2, which contains the individual raw image files of the Calcium sensor time lapse image series. The combined image stack shared here was constructed from these image files.
DOI: 10.6084/m9.figshare.12961961
title: Supplementary File 1-source data 2

description: Raw image data supporting Supplementary File 1b from the manuscript "Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy".<br>
DOI: 10.6084/m9.figshare.12961961.v4
title: Supplementary File 1-source data 2

description: Raw image data supporting Supplementary File 1b from the manuscript "Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy".<br>
DOI: 10.6084/m9.figshare.12961961.v3
title: Supplementary Figure 4 and Supplementary Table 2 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: Raw image data in ome.tiff format, supporting part of Supplementary Figure 4 (eGFP) and Supplementary Table 2 of the manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.<br>Furthermore the numerical data and analysis supporting the table is given in the opju data file. The .opju analysis data file can be opened with OriginPro2020, or with the freely distributed Origin viewer (https://www.originlab.com/viewer/).
DOI: 10.6084/m9.figshare.12961946
title: Figure 4-source data 2

description: Raw image data supporting Figure 4 and related figure supplements, from the manuscript "Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy".
DOI: 10.6084/m9.figshare.12961946.v3
title: Figure 4-source data 2

description: Raw image data supporting Figure 4 and related figure supplements, from the manuscript "Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy".
DOI: 10.6084/m9.figshare.12961946.v2
title: Figure 4. 2-, 3- and 4-photon microscopy in scattering tissue samples.

description: Raw image data in ome.tiff format, supporting figure 4 of the manuscript Intravital Deep-Tumor Single-Beam 2-, 3- and 4-Photon Microscopy. Furthermore, the numerical data and analysis parameters supporting the plots in panels 4b, 4c and 4d are given in data files Fig3e_4bd_S2c_AttenuationlengthAnalysis.opju and Fig3and4andS2_2020-1-4_SNR.opju. These files can be opened with OriginPro2020, or with the freely distributed Origin viewer (https://www.originlab.com/viewer/).
DOI: 10.6084/m9.figshare.12961829
title: Figure 3-source data 2

description: Raw image data and intermediate analysis results supporting Figure 3 and related figure supplements, from the manuscript "Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy".<br><br>The intermediate analysis results contain imagej ROI (regions of interest) files, Matlab data files (.mat) and Matlab scripts (.m).