cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18382648
title: TABLE 3 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 3. Number of spine-like setae on the legs of female Coryphophthalmus obscurus sp. nov.
SegmentsLegForeMiddleHindTarsomeres1st3–46–86–72nd1010–12123rd6–7128Tibia24–68Femur006–8
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 378 in Zootaxa 4661 (2) on page 378, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5281/zenodo.18382649
title: TABLE 3 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 3. Number of spine-like setae on the legs of female Coryphophthalmus obscurus sp. nov.
SegmentsLegForeMiddleHindTarsomeres1st3–46–86–72nd1010–12123rd6–7128Tibia24–68Femur006–8
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 378 in Zootaxa 4661 (2) on page 378, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5061/dryad.8186
title: Data from: Climatic gradients of arms race coevolution

description: In nature, spatiotemporally dynamic coevolutionary processes play major
 roles in the foundation and maintenance of biodiversity. Here, we examined
 the arms race coevolution involving a seed-eating weevil with a long snout
 and its camellia plant host with a thick fruit coat (pericarp) throughout
 the marked climatic gradient observed across the Japanese islands. Results
 demonstrated that female weevils, which bored holes through camellia
 pericarps to lay eggs into seeds, had evolved much longer snouts than
 males, especially in areas in which Japanese camellia pericarps were very
 thick. The thickness of the plant pericarp was heritable, and the camellia
 plant evolved a significantly thicker pericarp on islands with the weevil
 than on islands without it. Across populations with weevils, resource
 allocation to plant defense increased with increasing annual mean
 temperature or annual precipitation, thereby geographically
 differentiating the evolutionary and ecological interactions between the
 two species. Given that the coevolutionary relationship exhibited
 appreciable variation across a relatively small range of annual mean
 temperatures, ongoing global climatic change can dramatically alter the
 coevolutionary process, thereby changing the ecological interaction
 between these species.
description: Toju_AmNat_MS52288The data used for the statistical analysis of each figure/table are shown in each excel sheet.
DOI: 10.5061/dryad.c4j6t
title: Data from: Common evolutionary trends underlie the four-bar linkage systems of sunfish and mantis shrimp

description: Comparative biomechanics offers an opportunity to explore the evolution of
 disparate biological systems that share common underlying mechanics.
 Four-bar linkage modelling has been applied to various biological systems
 such as fish jaws and crustacean appendages to explore the relationship
 between biomechanics and evolutionary diversification. Mechanical
 sensitivity states that the functional output of a mechanical system will
 show differential sensitivity to changes in specific morphological
 components. We document similar patterns of mechanical sensitivity in two
 disparate four-bar systems from different phyla: the opercular four-bar
 system in centrarchid fishes and the raptorial appendage of stomatopods.
 We built dynamic linkage models of 20 centrarchid and 36 stomatopod
 species and used phylogenetic generalized least squares regression (PGLS)
 to compare evolutionary shifts in linkage morphology and mechanical
 outputs derived from the models. In both systems, the kinematics of the
 four-bar mechanism show significant evolutionary correlation with the
 output link, while travel distance of the output arm is correlated with
 the coupler link. This common evolutionary pattern seen in both fish and
 crustacean taxa is a potential consequence of the mechanical principles
 underlying four-bar systems. Our results illustrate the potential
 influence of physical principles on morphological evolution across
 biological systems with different structures, behaviors and ecologies.
description: Huetal2017_Centrarchid_DataWe used morphological and modeled kinematic data from 36 stomatopod species and 19 centrarchid species. Huetal2017_centrarchid_data.xlsx contains head length (HeadLength), jaw lengths (Jawlength), average relative link lengths (Coupler, Input, Output), and kinematic variables (MinKT, ScaledGape and Ang@MinKT) for all centrarchid species. Note that relative link length refers to the length of the mobile links (coupler, input and output) divided by the fixed link.Huetal2017_Stomatopod_dataWe used morphological and modeled kinematic data from 36 stomatopod species and 19 centrarchid species. Huetal2017_stomatopod_data.xlsx contains carapace length (carapace), average relative link lengths (Coupler, Input, Output), and kinematic variables (MinKT, Dist and Ang@MinKT) for all stomatopod species. Note that relative link length refers to the length of the mobile links (coupler, input and output) divided by the fixed link.
DOI: 10.5061/dryad.c41jc
title: Data from: Characterising demographic contributions to observed population change in a declining migrant bird

description: Populations of Afro-Palearctic migrant birds have shown severe declines in
 recent decades. To identify the causes of these declines, accurate
 measures of both demographic rates (seasonal productivity, apparent
 survival, immigration) and environmental parameters will allow
 conservation and research actions to be targeted effectively. We used
 detailed observations of marked breeding birds from a ‘stronghold’
 population of whinchats Saxicola rubetra in England (stable against the
 declining European trend) to reveal both on-site and external mechanisms
 that contribute to population change. From field data, a population model
 was developed based on demographic rates from 2011 to 2014. Observed
 population trends were compared to the predicted population trends to
 assess model-accuracy and the influence of outside factors, such as
 immigration. The sensitivity of the projected population growth rate to
 relative change in each demographic rate was also explored. Against
 expectations of high productivity, we identified low seasonal breeding
 success due to nocturnal predation and low apparent first-year survival,
 which led to a projected population growth rate (?) of 0.818, indicating a
 declining trend. However, this trend was not reflected in the census
 counts, suggesting that high immigration was probably responsible for
 buffering against this decline. Elasticity analysis indicated ? was most
 sensitive to changes in adult survival but with covariance between
 demographic rates accounted for, ? was most sensitive to changes in
 productivity. Our study demonstrates that high quality breeding habitat
 can buffer against population decline but high immigration and low
 productivity will expose even such stronghold populations to potential
 decline or abandonment if either factor is unsustainable. First-year
 survival also appeared low, however this result is potentially confounded
 by high natal dispersal. First-year survival and/or dispersal remains a
 significant knowledge gap that potentially undermines local solutions
 aimed at counteracting low productivity.
description: nests_data_for_logistic_exposure_modelsThis is a csv file of the nest visits used in the logistic exposure models. More detailed nest records for each year are available on request subject to the planned usage of the data.dispersalData on between year dispersal distances of colour ringed whinchats.MARK recapture just adultsThe mark recapture data for resightings of whinchats ringed as adults.JUST ADULTS.DBFMARK recapture adults and juvenilesMARK recapture data for whinchats ringed as adults and those ringed as nestlings.ADULTS AND JUV.DBF
DOI: 10.5281/zenodo.18382653
title: TABLE 4 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 4. Length ratios of urosternites and urocoxites of female Coryphophthalmus obscurus sp. nov.
Abdominal segmentUrosternite:urocoxiteUrostyli (not including apical spines):urocoxitesApical spines:styliII0.540.560.58III–VI0.56–0.720.49–0.510.59–0.60VII0.370.430.62VIII–0.720.57IX–0.680.39
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 381 in Zootaxa 4661 (2) on page 381, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5061/dryad.79b39
title: Data from: Does male care, provided to immature individuals, influence immature fitness in rhesus macaques?

description: Among many mammals, maternal care strongly impacts infant survival;
 however, less is known about whether adult males also affect infant
 fitness. Paternal care is expected when providing care enhances offspring
 survival and reproduction, which likewise increases fathers’ fitness.
 Males might also care for unrelated immature individuals to increase their
 mating probability with the immature individuals’ mothers. Studies in
 multimale primate groups showed that sires enhance food access for
 offspring and provide protection in conflicts. Furthermore, fathers’
 presence during infancy has been suggested to accelerate offspring sexual
 maturation. However, no study has yet directly linked the degree of
 father-offspring bonds to offspring fitness in primates. We previously
 reported father-offspring affiliation in rhesus macaques, pronounced
 during early infancy and independent of mothers’ presence. The present
 study aims at investigating whether affiliation with fathers or other
 males affects proxies of immature fitness (body mass gain, body fat and
 testis size). First, we combined behavioral, genetic and morphometric data
 from 55 subjects of one group. Second, using demographic and genetic data,
 we investigated for 92 individuals of the population whether mother- and
 father-offspring co-residence during immaturity influenced offspring
 lifetime reproductive success (LRS). Our results show that focal rank and
 higher amounts of affiliation with high-ranking males during infancy tend
 to positively impact body mass gain of female, but not male focal animals.
 In contrast, body mass gain of male focal individuals, but not females’,
 appeared to be higher when affiliation of male immature individuals was
 evenly distributed across their adult male partners. Moreover, we found
 mothers’, but not fathers’, presence during immaturity to predict
 offspring LRS. Our results suggest that male-immature affiliation, but not
 father-offspring co-residence, potentially impacts proxies of immature
 fitness. However, future studies should investigate the underlying
 mechanisms of male-immature relationships and their impact on immature
 fitness in more detail.
description: male care and immature
 fitnessplease see read me file
 for further explanations
DOI: 10.5281/zenodo.18382652
title: TABLE 4 in Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia

description: TABLE 4. Length ratios of urosternites and urocoxites of female Coryphophthalmus obscurus sp. nov.
Abdominal segmentUrosternite:urocoxiteUrostyli (not including apical spines):urocoxitesApical spines:styliII0.540.560.58III–VI0.56–0.720.49–0.510.59–0.60VII0.370.430.62VIII–0.720.57IX–0.680.39
description: Published as part of Kaplin, Vladimir, 2019, Taxonomic review of the genera Trigoniophthalmus Verhoeff and Coryphophthalmus Verhoeff (Archaeognatha, Machilidae) with descriptions of two new species of the genus Coryphophthalmus from Serbia, pp. 381 in Zootaxa 4661 (2) on page 381, DOI: 10.11646/zootaxa.4661.2.6, http://zenodo.org/record/3379524
DOI: 10.5061/dryad.td8nb
title: Data from: Fine-scale population dynamics in a marine fish species inferred from dynamic state-space models

description: Identifying the spatial scale of population structuring is critical for
 the conservation of natural populations and for drawing accurate
 ecological inferences. However, population studies often use spatially
 aggregated data to draw inferences about population trends and drivers,
 potentially masking ecologically relevant population sub-structure and
 dynamics. The goals of this study were to investigate how population
 dynamics models with and without spatial structure affect inferences on
 population trends and the identification of intrinsic drivers of
 population dynamics (e.g. density dependence). Specifically, we developed
 dynamic, age-structured, state-space models to test different hypotheses
 regarding the spatial structure of a population complex of coastal
 Atlantic cod (Gadus morhua). Data were from a 93-year survey of juvenile
 (age 0 and 1) cod sampled along &gt;200 km of the Norwegian Skagerrak
 coast. We compared two models: one which assumes all sampled cod belong to
 one larger population, and a second which assumes that each fjord contains
 a unique population with locally determined dynamics. Using the best
 supported model, we then reconstructed the historical spatial and temporal
 dynamics of Skagerrak coastal cod. Cross-validation showed that the
 spatially structured model with local dynamics had better predictive
 ability. Furthermore, posterior predictive checks showed that a model
 which assumes one homogeneous population failed to capture the spatial
 correlation pattern present in the survey data. The spatially structured
 model indicated that population trends differed markedly among fjords, as
 did estimates of population parameters including density-dependent
 survival. Recent biomass was estimated to be at a near-record low all
 along the coast, but the finer scale model indicated that the decline
 occurred at different times in different regions. Warm temperatures were
 associated with poor recruitment, but local changes in habitat and fishing
 pressure may have played a role in driving local dynamics. More generally,
 we demonstrated how state-space models can be used to test evidence for
 population spatial structure based on survey time-series data. Our study
 shows the importance of considering spatially structured dynamics, as the
 inferences from such an approach can lead to a different ecological
 understanding of the drivers of population declines, and fundamentally
 different management actions to restore populations.
description: Beach seine catches of
 juvenile codBeach seine catches of
 juvenile Atlantic cod (Gadus morhua), with ages determined by
 length-frequency distributions. Columns are 1) Region or Fjord, 2)
 Station, 3) Year, 4) Catch of age-0 cod, 5) Catch of age-1
 cod.Age0_Age1_catches.csv
DOI: 10.5061/dryad.v8046
title: Data from: Experimental evolution of parasitoid infectivity on symbiont-protected hosts leads to the emergence of genotype-specificity

description: Host-parasitoid interactions may lead to strong reciprocal selection for
 traits involved in host defense and parasitoid counter-defense. In aphids,
 individuals harboring the facultative bacterial endosymbiont Hamiltonella
 defensa exhibit enhanced resistance to parasitoid wasps. We used an
 experimental evolution approach to investigate the ability of the
 parasitoid wasp Lysiphlebus fabarum to adapt to the presence of H. defensa
 in its aphid host Aphis fabae. Sexual populations of the parasitoid were
 exposed for eleven generations to a single clone of A. fabae, either free
 of H. defensa or harboring artificial infections with three different
 isolates of H. defensa. Parasitoids adapted rapidly to the presence of H.
 defensa in their hosts, but this adaptation was in part specific to the
 symbiont isolate they were evolving against and did not result in an
 improved infectivity on all symbiont-protected hosts. Comparisons of life
 history traits among the evolved lines of parasitoids did not reveal any
 evidence for costs of adaptation to H. defensa in terms of correlated
 responses that could constrain such adaptation. These results show that
 parasitoids readily evolve counter-adaptations to heritable defensive
 symbionts of their hosts, but that different symbiont strains impose
 different evolutionary challenges. The symbionts thus mediate the
 host-parasite interaction by inducing line-by-line genetic specificity.
description: infectivity_gen0The table "infectivity_gen0" corresponds to the infectivity test at the beginning of experimental evolution procedure.infectivity_gen5The table "infectivity_gen5" corresponds to the infectivity test after five generations of experimental evolution.infectivity_gen11The table "infectivity_gen11" corresponds to the infectivity test after eleven generations of experimental evolution.infectivity_mixed_linesThe table "infectivity_mixed_lines" corresponds to the infectivity test after the mixing of the experimental lines a the end of the experimental evolution procedure.traits_evolution_linesThe table "traits_evolution_lines" corresponds to the life-history traits (sex, mass, tibia length, development time) measured in the evolution lines.eggs_evolution_linesThe table "eggs_evolution_lines" corresponds to the average egg size measured in the evolution lines.traits_mixed_evolution_linesThe table "traits_mixed_evolution_lines" corresponds to the life-history traits (sex, mass, tibia length, development time) measured in the evolution treatment after mixing the evolution lines.reduced_infectivity_mixedThe table "reduced_infectivity_mixed" corresponds to the infectivity on the H. defensa-free clone A407 of the parasitoids from the different evolution treatment after the mixing of the evolution lines.
DOI: 10.5061/dryad.8g5n6
title: Data from: Temporal sampling helps unravel the genetic structure of naturally occurring populations of a phytoparasitic nematode. 2. Separating the relative effects of gene flow and genetic drift

description: Studying wild pathogen populations in natural ecosystems offers the
 opportunity to better understand the evolutionary dynamics of biotic
 diseases in crops and to enhance pest control strategies. We used
 simulations and genetic markers to investigate the spatial and temporal
 population genetic structure of wild populations of the beet cyst nematode
 Heterodera schachtii on a wild host plant species, the sea beet (Beta
 vulgaris spp. maritima), the wild ancestor of cultivated beets. Our
 analysis of the variation of eight microsatellite loci across four study
 sites showed that (i) wild H. schachtii populations displayed fine-scaled
 genetic structure with no evidence of substantial levels of gene flow
 beyond the scale of the host plant, and comparisons with simulations
 indicate that (ii) genetic drift substantially affected the residual
 signals of isolation-by-distance processes, leading to departures from
 migration-drift equilibrium. In contrast to what can be suspected for
 (crop) field populations, this showed that wild cyst nematodes have very
 low dispersal capabilities and are strongly disconnected from each other.
 Our results provide some key elements for designing pest control
 strategies, such as decreasing passive dispersal events to limit the
 spread of virulence among field nematode populations.
description: GeneticData_2012-2013This file contains genetic data (8 microsatellites) for the 74 nematode populations sampled in 2012 and 2013 in Fstat format.PopulationCodeAndSpatialCoordinatesThis file contains the name and the spatial localisation (x and y coordinates) corresponding to nematode population codes used in the file GeneticData_2012-2013.dat.
DOI: 10.5061/dryad.d38f2
title: Data from: Predator-induced phenotypic plasticity within- and across-generations: a challenge for theory?

description: Much work has shown that the environment can induce non-genetic changes in
 phenotype that span multiple generations. Theory predicts that predictable
 environmental variation selects for both increased within- and
 across-generation responses. Yet, to the best of our knowledge, there are
 no empirical tests of this prediction. We explored the relationship
 between within- versus across-generation plasticity by evaluating the
 influence of predator cues on the life-history traits of Daphnia ambigua.
 We measured the duration of predator-induced transgenerational effects,
 determined when transgenerational responses are induced, and quantified
 the cues that activate transgenerational plasticity. We show that predator
 exposure during embryonic development causes earlier maturation and
 increased reproductive output. Such effects are detectable two generations
 removed from predator exposure and are similar in magnitude in response to
 exposure to cues emitted by injured conspecifics. Moreover, all
 experimental contexts and traits yielded a negative correlation between
 within- versus across-generation responses. That is, responses to predator
 cues within- and across-generations were opposite in sign and magnitude.
 Although many models address transgenerational plasticity, none of them
 explain this apparent negative relationship between within- and
 across-generation plasticities. Our results highlight the need to refine
 the theory of transgenerational plasticity.
description: Predator_plasticity_experiments