cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id87673.2
title: StrainInfo SI-ID 87673.2

description: StrainInfo dataset 87673 about a strain of Microlunatus spumicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87678.3
title: StrainInfo SI-ID 87678.3

description: StrainInfo dataset 87678 about a strain of Burkholderia mallei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87681.2
title: StrainInfo SI-ID 87681.2

description: StrainInfo dataset 87681 about a strain of Gymnascella dankaliensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.5281/zenodo.14962518
title: Zero-Shot Protein Segmentation (ZPS) Data and Embeddings

description: uniprotkb_Human.txt



this is a raw text file that contains a downloaded copy of UniProtKB

this inlcudes all reviewed human protein sequences 

we used annotations from this file to copmare to ZPS predictions


 

uniprotkb_Human_Sequences.fasta



this is a fasta file that contains reviewed human protein sequences

these are the sequences we used as input to ProtT5 to generate protein embeddings


 

ZPS_Boundaries.tsv



this is a tab separated file that contains the boundaries of protein segments defined by ZPS for reviewed human protein sequences

we used zero-based indexing for the protein boundaries


 

ZPS_Segment_Embeddings.hdf5



this is a hdf5 file that contains segment embeddings for the human proteome

see "Zero-shot segmentation using embeddings from a language model identifies functional regions in the human proteome" A. G. Sangster 2025 for definition of segment embeddings

segment boundaries in this file are also in zero-based indexing
DOI: 10.60712/si-id87683.3
title: StrainInfo SI-ID 87683.3

description: StrainInfo dataset 87683 about a strain of Shewanella benthica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87684.3
title: StrainInfo SI-ID 87684.3

description: StrainInfo dataset 87684 about a strain of Clostridium botulinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87685.2
title: StrainInfo SI-ID 87685.2

description: StrainInfo dataset 87685 about a strain of Clostridium botulinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.5281/zenodo.10162268
title: Dataset and analysis code for: "Nitrogen demand, supply, and acquisition strategy control plant responses to elevated CO2 at different scales"

description: Small updates to figure formatting to adhere to Journal of Experimental Botany author guidelines
DOI: 10.5281/zenodo.10162269
title: eaperkowski/NxCO2xI_ms_data: NxCO2xI: 1.0

description: Repository contains data and analyses reported in Perkowski et al. (in prep), which reports findings from a growth chamber experiment that grew soybean (Glycine max L. (Merr)) seedlings under full factorial combinations of two CO2 treatments, two inoculation treatments, and nine soil nitrogen fertilization treatments.
DOI: 10.5281/zenodo.10177575
title: Dataset and analysis code for: "Nitrogen demand, supply, and acquisition strategy control plant responses to elevated CO2 at different scales"

description: Repository contains data and analyses reported in Perkowski et al. (in prep), which reports findings from a growth chamber experiment that grew soybean (Glycine max L. (Merr)) seedlings under full factorial combinations of two CO2 treatments, two inoculation treatments, and nine soil nitrogen fertilization treatments.
New in v1.1: remove unnecessary columns in data/NxCO2xI_data.csv
DOI: 10.5281/zenodo.12812758
title: eaperkowski/NxCO2xI_ms_data: v2.0.0

description: Repository contains data and analyses reported in Perkowski et al. (in prep), which reports findings from a growth chamber experiment that grew soybean (Glycine max L. (Merr)) seedlings under full factorial combinations of two CO2 treatments, two inoculation treatments, and nine soil nitrogen fertilization treatments.

New in v2.0: add relative allocation traits (root:shoot, leaf mass fraction, stem mass fraction, root mass fraction) following recommendation by reviewer. Updates to plots are also included in this release.
DOI: 10.5281/zenodo.13541517
title: Dataset and analysis code for: "Nitrogen demand, supply, and acquisition strategy control plant responses to elevated CO2 at different scales"

description: Repository contains data and analyses reported in Perkowski et al. (in prep), which reports findings from a growth chamber experiment that grew soybean (Glycine max L. (Merr)) seedlings under full factorial combinations of two CO2 treatments, two inoculation treatments, and nine soil nitrogen fertilization treatments.

New in v2.1: correct error with chlorophyll content equation and refine code per revision submitted to PC&E.
DOI: 10.5281/zenodo.14962595
title: Dataset and analysis code for: "Nitrogen demand, supply, and acquisition strategy control plant responses to elevated CO2 at different scales"

description: Small updates to figure formatting to adhere to Journal of Experimental Botany author guidelines
DOI: 10.60712/si-id87690.2
title: StrainInfo SI-ID 87690.2

description: StrainInfo dataset 87690 about a strain of Clostridium argentinense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87698.3
title: StrainInfo SI-ID 87698.3

description: StrainInfo dataset 87698 about a strain of Brucella melitensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87699.3
title: StrainInfo SI-ID 87699.3

description: StrainInfo dataset 87699 about a strain of Clostridium phytofermentans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87702.3
title: StrainInfo SI-ID 87702.3

description: StrainInfo dataset 87702 about a strain of Legionella gresilensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87704.3
title: StrainInfo SI-ID 87704.3

description: StrainInfo dataset 87704 about a strain of Prochlorococcus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87705.3
title: StrainInfo SI-ID 87705.3

description: StrainInfo dataset 87705 about a strain of Streptococcus australis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87706.2
title: StrainInfo SI-ID 87706.2

description: StrainInfo dataset 87706 about a strain of Hyphomicrobium sulfonivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87707.2
title: StrainInfo SI-ID 87707.2

description: StrainInfo dataset 87707 about a strain of Arthrobacter methylotrophus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87708.3
title: StrainInfo SI-ID 87708.3

description: StrainInfo dataset 87708 about a strain of Pseudarthrobacter sulfonivorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87710.3
title: StrainInfo SI-ID 87710.3

description: StrainInfo dataset 87710 about a strain of Lachnobacterium bovis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87711.3
title: StrainInfo SI-ID 87711.3

description: StrainInfo dataset 87711 about a strain of Selenihalanaerobacter shriftii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87712.3
title: StrainInfo SI-ID 87712.3

description: StrainInfo dataset 87712 about a strain of Mogibacterium pumilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87713.3
title: StrainInfo SI-ID 87713.3

description: StrainInfo dataset 87713 about a strain of Mogibacterium diversum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87714.3
title: StrainInfo SI-ID 87714.3

description: StrainInfo dataset 87714 about a strain of Acidothermus cellulolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87715.2
title: StrainInfo SI-ID 87715.2

description: StrainInfo dataset 87715 about a strain of Thiomonas thermosulfata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87720.3
title: StrainInfo SI-ID 87720.3

description: StrainInfo dataset 87720 about a strain of Mogibacterium vescum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87721.3
title: StrainInfo SI-ID 87721.3

description: StrainInfo dataset 87721 about a strain of Mogibacterium neglectum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87723.3
title: StrainInfo SI-ID 87723.3

description: StrainInfo dataset 87723 about a strain of Thauera selenatis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87737.3
title: StrainInfo SI-ID 87737.3

description: StrainInfo dataset 87737 about a strain of Prosthecochloris vibrioformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87742.2
title: StrainInfo SI-ID 87742.2

description: StrainInfo dataset 87742 about a strain of Anaeromyxobacter dehalogenans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87743.2
title: StrainInfo SI-ID 87743.2

description: StrainInfo dataset 87743 about a strain of Anaeromyxobacter dehalogenans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87745.3
title: StrainInfo SI-ID 87745.3

description: StrainInfo dataset 87745 about a strain of Acetomicrobium mobile. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.15468/dl.6csdu7
title: Occurrence Download

description: A dataset containing 6657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-88.04353 21.63682,-89.38038 15.28682,-84.18155 15.13828,-83.95874 10.68214,-82.54763 8.93682,-81.02512 8.49121,-79.3912 9.38244,-76.56898 7.59998,-71.59296 12.09326,-72.55845 9.2339,-71.59296 8.75115,-70.70173 9.08536,-70.85027 11.01635,-68.65933 10.34793,-63.08916 9.93945,-61.12103 9.2339,-59.67279 19.48302,-74.60085 20.29998,-80.50523 22.41664,-81.99061 22.89939,-88.04353 21.63682))",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Hydrocharitaceae, Cymodoceaceae)"
 ]
}

 The dataset includes 6657 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004116-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id87752.3
title: StrainInfo SI-ID 87752.3

description: StrainInfo dataset 87752 about a strain of Saccharophagus degradans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87757.2
title: StrainInfo SI-ID 87757.2

description: StrainInfo dataset 87757 about a strain of Polaromonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87758.3
title: StrainInfo SI-ID 87758.3

description: StrainInfo dataset 87758 about a strain of Geovibrio thiophilus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87759.2
title: StrainInfo SI-ID 87759.2

description: StrainInfo dataset 87759 about a strain of Helicobacter pylori. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87760.3
title: StrainInfo SI-ID 87760.3

description: StrainInfo dataset 87760 about a strain of Leptospirillum ferriphilum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87765.3
title: StrainInfo SI-ID 87765.3

description: StrainInfo dataset 87765 about a strain of Rhizobium indigoferae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87766.3
title: StrainInfo SI-ID 87766.3

description: StrainInfo dataset 87766 about a strain of Sinorhizobium kummerowiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87777.2
title: StrainInfo SI-ID 87777.2

description: StrainInfo dataset 87777 about a strain of Enterococcus casseliflavus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87778.2
title: StrainInfo SI-ID 87778.2

description: StrainInfo dataset 87778 about a strain of Enterococcus casseliflavus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87779.3
title: StrainInfo SI-ID 87779.3

description: StrainInfo dataset 87779 about a strain of Prochlorococcus marinus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87782.3
title: StrainInfo SI-ID 87782.3

description: StrainInfo dataset 87782 about a strain of Macrococcus hajekii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87783.3
title: StrainInfo SI-ID 87783.3

description: StrainInfo dataset 87783 about a strain of Macrococcus brunensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87784.3
title: StrainInfo SI-ID 87784.3

description: StrainInfo dataset 87784 about a strain of Macrococcus lamae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87785.2
title: StrainInfo SI-ID 87785.2

description: StrainInfo dataset 87785 about a strain of Corynebacterium auriscanis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87786.2
title: StrainInfo SI-ID 87786.2

description: StrainInfo dataset 87786 about a strain of Corynebacterium auriscanis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87787.3
title: StrainInfo SI-ID 87787.3

description: StrainInfo dataset 87787 about a strain of Corynebacterium capitovis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87790.2
title: StrainInfo SI-ID 87790.2

description: StrainInfo dataset 87790 about a strain of Anaeroglobus geminatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87791.2
title: StrainInfo SI-ID 87791.2

description: StrainInfo dataset 87791 about a strain of Schaalia funkei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87794.3
title: StrainInfo SI-ID 87794.3

description: StrainInfo dataset 87794 about a strain of Schaalia canis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87795.2
title: StrainInfo SI-ID 87795.2

description: StrainInfo dataset 87795 about a strain of Actinomyces urogenitalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87796.3
title: StrainInfo SI-ID 87796.3

description: StrainInfo dataset 87796 about a strain of Aerococcus urinaehominis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87798.2
title: StrainInfo SI-ID 87798.2

description: StrainInfo dataset 87798 about a strain of Actinomyces catuli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87799.3
title: StrainInfo SI-ID 87799.3

description: StrainInfo dataset 87799 about a strain of Corynebacterium testudinoris. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87801.3
title: StrainInfo SI-ID 87801.3

description: StrainInfo dataset 87801 about a strain of Aerococcus sanguinicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87802.2
title: StrainInfo SI-ID 87802.2

description: StrainInfo dataset 87802 about a strain of Mannheimia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87803.2
title: StrainInfo SI-ID 87803.2

description: StrainInfo dataset 87803 about a strain of Mannheimia haemolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87804.2
title: StrainInfo SI-ID 87804.2

description: StrainInfo dataset 87804 about a strain of Mannheimia haemolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87806.2
title: StrainInfo SI-ID 87806.2

description: StrainInfo dataset 87806 about a strain of Mannheimia glucosida. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87807.2
title: StrainInfo SI-ID 87807.2

description: StrainInfo dataset 87807 about a strain of Mannheimia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87808.2
title: StrainInfo SI-ID 87808.2

description: StrainInfo dataset 87808 about a strain of Mannheimia haemolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87809.2
title: StrainInfo SI-ID 87809.2

description: StrainInfo dataset 87809 about a strain of Mannheimia ruminalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87811.2
title: StrainInfo SI-ID 87811.2

description: StrainInfo dataset 87811 about a strain of Mannheimia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87815.3
title: StrainInfo SI-ID 87815.3

description: StrainInfo dataset 87815 about a strain of Gleimia coleocanis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.
DOI: 10.60712/si-id87816.2
title: StrainInfo SI-ID 87816.2

description: StrainInfo dataset 87816 about a strain of a not identified species. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data.