cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mr5c0vs/2
title: exp birds

description: This file only includes those females that started to produce a clutch.
ID = Identity of the bird
Treatment = Injection with either phosphate buffered saline (PBS) or tetanus-toxoid vaccine
Exp = Control females (1); tetanus-injected females (2)
Body mass = Body mass (g) of the female
Days to first egg = The time period between first presented with a nest box and nesting material and the production of the first egg by the females.
Number of eggs = Clutch size
Mean egg mass = Mean egg mass (g) of the eggs in each clutch
Total egg mass = Total mass (g) of all eggs in a clutch
Mean yolk mass = Mean yolk mass (g) of the eggs in each clutch
Mean yolk proportion = Mean proportion of yolk in relation to egg mass in each clutch
Arcsin mean yolk prop. = Arcsine transformed mean yolk proportion
Diff body Mass = Initial body mass taken on the day of the second injection minus body mass after completion of egg laying.
Days btw bm measurements = Number of days between the two body mass measurements
Scaled index = Condition index of the female
Age = Age of the female; 1 = One year old; 2 = Two years old
Tetanus = Tetanus antibody concentrations (mODmin-1)
Log (tet) = The logarithm of tetanus antibody concentrations
DOI: 10.5061/dryad.mr5c0vs/3
title: eggs

description: This file contains all individual eggs
Female = Female identity
Treatment = Injection with either phosphate buffered saline (PBS) or tetanus-toxoid vaccine
Exp = Control females (1); tetanus-injected females (2)
Body mass = Body mass (g) of the female
Clutch size = Number of eggs in the clutch
Egg day = Number of days after the production of the first egg (egg day = 1) that each egg in the clutch were produced.
Egg order = The order in which the eggs were produced
Rel egg order = The egg order divided by clutch size to adjust egg order for variation in clutch 
size.
Yolk mass = The yolk mass of each individual egg
Egg mass = The total mass of each individual egg
Albumen mass = The albumen mass of each individual egg
Yolk Proportion = The proportion of yolk in relation to egg mass of each individual egg
Yolk prop. arcsin = Arcsine transformed yolk proportions of each individual egg
Scaled index = Condition index of the female
DOI: 10.5061/dryad.p65mc58/28
title: LNG0168_R1.fq

description: Raw Illumina reads for LNG0168
DOI: 10.5061/dryad.p65mc58/29
title: POE4359_R1.fq

description: Raw Illumina reads for POE4359
DOI: 10.5061/dryad.p65mc58/30
title: POE4070_R1.fq

description: Raw Illumina reads for POE4070
DOI: 10.5061/dryad.p65mc58/31
title: POE4090_R1.fq

description: Raw Illumina reads for POE4090
DOI: 10.5061/dryad.p65mc58/32
title: ANMO1852_R1.fq

description: Raw Illumina reads for ANMO1852
DOI: 10.5061/dryad.p65mc58/33
title: POE4058_R1.fq

description: Raw Illumina reads for POE4058
DOI: 10.5061/dryad.p65mc58/35
title: POE4078_R1.fq

description: Raw Illumina reads for POE4078
DOI: 10.5061/dryad.p65mc58/36
title: LNG0068_R1.fq

description: Raw Illumina reads for LNG0068
DOI: 10.5061/dryad.s24mq59/1
title: Data for carbon diversity
DOI: 10.5061/dryad.st482f3/1
title: Site information and species data  for Pound et al. 2018

description: Site information and species data, collected from streams in the Adirondacks, NY. Site information tab: stream ID, collection date, group classification, UTM coordinates based on NAD83, pH, concentration of inorganic aluminum, and temperature at the time of collection. Species data tab: list of species, acid tolerance of each species, and relative proportional abundance in samples across four groups of streams, LS_Aug, HS_Mar, HH_Mar, and HH_Aug.
DOI: 10.5061/dryad.t2m14v1/1
title: Balenger_cricket_density_data
DOI: 10.17632/47rk35ypy6.1
title: Data for: EDIACARAN PALEOENVIRONMENTAL CHANGES RECORDED IN THE MIXED CARBONATE-SILICICLASTIC BAMBUÍ BASIN, BRAZIL

description: Chemostratigraphic data
DOI: 10.17632/59x9wkw4fw.1
title: Data for: 3297355

description: Business Schools and University World Ranking
DOI: 10.17632/rb7yhdnz38.1
title: Data for: Development of broad-acting clays for the tight adsorption of benzo[a]pyrene and aldicarb

description: Raw and processed data for isotherms and hydra bioassay.
DOI: 10.5061/dryad.17bq5d8/1
title: Survival of Atlantic salmon juveniles

description: Number of Atlantic salmon individuals of each family and cross (wild mother x wild father: w, wild mother x farmed father: wf, and farmed mother x farmed father: fw) that were stocked and recaptured in each stream channel. Associated family embryo SMR (residuals) and mass is given together with information on the food availability treatment (high: H, and low: L) and the competition treatment (allopatry: w, wf and fw, and sympatry: w-fw, w-wf) .
DOI: 10.5061/dryad.17bq5d8/2
title: Growth of Atlantic salmon juveniles

description: Final mass of individual Atlantic salmon juveniles at experiment termination given together with the associated mean family egg mass and standard metabolic rate (residuals). Also provided is information on the types of crosses (wild mother x wild father: w, wild mother x farmed father: wf, farmed mother x wild father: fw), food availability treatment (low: L, and high: H), competition treatment (allopatry: w, wf, fw, and sympatry: w-fw, w-wf) and the final number of suriving offspring in each stream channel.
DOI: 10.5061/dryad.17bq5d8/3
title: Oxygen consumption for the Imsa-Aquagen material

description: O2 consumption in each vial (mg) that contained 5 eggs is given together with mean egg size (g), duration of each measurement period (h), type of cross (wild mother x wild father: ww, farmed mother x farmed father: ff, wild mother x farmed father: wf, farmed mother x wild father: fw) and female and male type (wild: w, farmed:f) and ID.
DOI: 10.5061/dryad.17bq5d8/4
title: Oxygen consumption for the Surna-AquaGen material

description: O2 consumed in each vial (mg) that contained 1 eggs is given together with egg size (g), duration of each measurement period (h), type of cross (wild mother x wild father: ww, farmed mother x farmed father: ff, wild mother x farmed father: wf, farmed mother x wild father: fw) and female and male type (wild: w, farmed: f) and ID.
DOI: 10.5061/dryad.1kk02qr/1
title: OpenNahele forest plot data

description: Diameter at breast height (or occurrence) of individual trees, shrubs, and tree ferns across 530 plots across the Hawaiian archipelago and includes native status and cultivated status of the 185 species.
DOI: 10.5061/dryad.1kk02qr/2
title: OpenNahele Maximum Plant Size

description: Maximum plant size of 58 tree, shrub, and tree fern species that occur in 530 forest plots across the Hawaiian archipelago. Maximum plant size was estimated as D950.1and Dmax3 following King et al. (2006).
DOI: 10.5061/dryad.21j7k3f/1
title: Vegetation, seed rain and limitation data

description: This file contains information on aboveground vegetation, seed rain, seed and establishment limitations, per capita seed germination, species traits, and regression results (influence of species traits on limitation values). This study was conducted in a neotropical savanna (Cerrado) in southeast Brazil.
DOI: 10.5061/dryad.21mb45j/1
title: Cherax_data_input

description: R script to read DCra15_Chdes_SNP_2row.csv into genlight objects (CRAN package adegenet) to facilitate analysis. Creates two genlight objects, one for the full dataset and one for the ingroup taxon only
DOI: 10.5061/dryad.21mb45j/2
title: cherax_full_filter

description: Script to filter the full dataset on callrate, repeatability and secondaries, and to combine sampling sites within a single drainage and with very low sample sizes.
DOI: 10.5061/dryad.21mb45j/3
title: cherax_ingroup_filter

description: Script to filter the ingroup dataset on callrate, repeatability and secondaries.
DOI: 10.5061/dryad.21mb45j/4
title: cherax_recode_ingroup_only

description: Recode table to select ingroup taxa only.
DOI: 10.5061/dryad.482f265/1
title: data archiving of Saccharina japonica

description: Input files and result files for DIYABC, Maxent and STRUCTURE, and the alignment file of mitochondrial data.
DOI: 10.5061/dryad.482q2rh/2
title: Data supporting Table 1_SQUID measurements

description: Experimental results of SQUID measurements supporting data in Table 1 - Magnetic properties of magnesium ferrite nanoparticles
DOI: 10.5061/dryad.482q2rh/3
title: Curcumin emission using polarized light_Table 2

description: Fluorescence spectra obtained using polarized light for curcumin fluorescence steady-state anisotropy determination. Data supporting Table 2 - Anisotropy of curcumin in the several nanosystems.
DOI: 10.5061/dryad.482q2rh/4
title: Data_Supporting_Table3_EE%

description: Experimental measurements of curcumin fluorescence emission spectra for determination of encapsulation efficiencies. Data supporting Table 3
DOI: 10.5061/dryad.4sr5b16/1
title: Spider Foraging

description: Results from foraging trials in two types of arenas (circular and annular).
DOI: 10.5061/dryad.4sr5b16/2
title: Spider Tracking

description: Movement data of spiders in circular arenas of three sizes, divided into three sheets (tabs). Trial number is given in column A. Spider's location is given in columns B and C. Conversion from pixels to millimeters is given in column D. Location of arena center is given in pixels in columns E and F. Radius of the arena is given in pixels in column G.
DOI: 10.5061/dryad.4sr5b16/3
title: FlyTracking

description: Fly movement in circular arenas, presented in matlab data files obtained via ctrax. Data files are labeled with a letter to indicate arena size (S, M, or L) and a number to indicate trial number. X and Y are fly positions in pixels. Note that associated arena centers, radii, and correct pixel to milllimeter conversions are given in Fly Tracking Arena Data.
DOI: 10.5061/dryad.4sr5b16/4
title: Fly Tracking Arena Data

description: Arena data associated with the Fly Tracking data. Arena size is given in column A. Replicate number is given in column B. Arena center in pixels is given in columns C and D. Arena radius is given in pixels in column E. Conversion from pixels to millimeters is given in column F.
DOI: 10.5061/dryad.5hr25nv/1
title: tipRatesDataScripts

description: R scripts and data files needed to reproduce all analyses and figures.
DOI: 10.5061/dryad.5hr25nv/2
title: treesForTipRates

description: Directory of all phylogenies used to evaluate tip rate metrics.
DOI: 10.5061/dryad.5vf0143/2
title: Live Mating Experiment

description: Behavioral data collected from "Live Mating Experiment." For female states, "v" = virgin, "m" = mated, "f" = fed, and "s" = starved (referred to as "deprived" in manuscript). "LatOrient" = the time elapsed before first female orient toward male with "FemaleOrientCensor" as a censor where 1 represents a trial with recorded orient behaviors (values of 301 indicate behavior did not occur in the 300 second trial). "LatRec" = the time elapsed before first female receptivity display with "FemRecCensor" as a censor where 1 represents a trial with recorded receptivity behaviors (values of 301 indicate behavior did not occur in the 300 second trial). "LatCourt" = the time elapsed before first male courtship display with "MaleCourtCensor" as a censor where 1 represents a trial with recorded courtship behaviors (values of 301 indicate behavior did not occur in the 300 second trial). "LatCop" = the time elapsed before copulation with "CopCensor" as a censor where 1 represents a trial with recorded copulation (values of 301 indicate behavior did not occur in the 300 second trial). "Pivot," "Settle," and "TLE" are individual components of female receptivity displays. "TotalRec" is the sum of those three displays. “Strikes” and “Bouts” are individual components of male courtship displays and “spb” is the number of strikes per bout. “TrialLength” is the total time elapsed between introduction of the male and A) expiration of time, B) cannibalism, or C) copulation. “LengthFromCourt” is the time elapsed between the end of the trial and the beginning of the male’s first courtship display.
DOI: 10.5061/dryad.5vf0143/3
title: Silk Experiment

description: Behavioral data collected from "Male Courtship on Female Silk Experiment." For female states, "v" = virgin, "m" = mated, "f" = fed, and "s" = starved (referred to as "deprived" in manuscript). "Latency" = the time elapsed before first male courtship display with "CourtshipCensor" as a censor where 1 represents a trial with recorded courtship behaviors (values of 301 indicate behavior did not occur in the 300 second trial). “Strikes” and “Bouts” are individual components of male courtship displays and “spb” is the number of strikes per bout.
DOI: 10.5061/dryad.5vv774m/1
title: Reports paper Risk_Benefit Orally Bioavailable Flubendazole Formulation

description: reports containing full description of methods and all data of toxicity studies and pharmacokinetic studies described in the paper
DOI: 10.5061/dryad.6mc1606/1
title: ESM3 Microsatellite data

description: White rhinoceros microsatellite data for 10 markers and 232 individuals in Genepop format
DOI: 10.5061/dryad.6mc1606/2
title: ESM4 Control region data

description: White rhinoceros control region sequence data for 63 individuals in Arlequin format
DOI: 10.5061/dryad.741c4q3/1
title: F_grandis_all_loci.vcf

description: VCF file containing all loci (variant and invariant) and individuals used in analyses. File contains 3,090,808 loci for 141 individuals. Individuals are named by their location of capture (first portion of sample name), and sample names match those in other provided supplements. The following individuals were included in this file, but eliminated from analyses in the study: Horn03:C6LMCANXX:7:000000000 Horn3:C6RJ0ANXX:5:000000000 BSTL51:C6LMCANXX:7:000000000 Pasc115:C7PDKANXX:8:000000000 Cat52:C6RJ0ANXX:5:000000000  Cat54:C6RJ0ANXX:5:000000000 BSTL53:C6LMCANXX:7:000000000 BSTL127:C7PDKANXX:8:000000000
DOI: 10.5061/dryad.77c4555/1
title: Raw data

description: Raw data of lifetime reproductive success (LRS), Fertility assays and Population fitness assays.
DOI: 10.5061/dryad.7jr1b8r/1
title: Molecular base data Sorbus

description: Molecular data obtained from analysis of Sorbus meinichii s.l. and its parental taxa in the Baltic Sea region. CH01H10, MSS16, MSS1, and MSS3 are nuclear microsatellite loci; rps16pm2 and trnT-Lpm4 are plastid microsatellite loci. “1” indicates the presence of an allele at a locus. Uncertain presence of an allele is indicated by “?”. Samples without any recorded alleles have missing information for that particular locus. The combination of fragments at plastid loci is summarized as haplotypes. Ploidy level is given for samples analyzed by flow cytometry.
DOI: 10.5061/dryad.86pg46n/1
title: Raw data and calculation of seaweed/antibiotic resistance scores

description: Contained here is the raw data for "Patterns of cross-resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials" accepted for publication in Evolutionary Applications
DOI: 10.5061/dryad.b0bp357/1
title: Singh_and_Punzalan_2018_Evolution

description: Data set of (previously published) estimates of linear selection acting on male and female traits. Data set includes species ID, trait data, and component of fitness through which selection was estimated. README file contains further description of the data set.
DOI: 10.5061/dryad.c317v31/1
title: ITS1 alignment

description: The ITS1 sequences were aligned in the online version of MAFFT 7 (Katoh, Rozewicki, & Yamada, 2017) under the Q-INS-i algorithm with the default settings. Gaps were coded as characters following the simple method of Simmons and Ochoterena (2000) and appended to the nucleotide sequences using FastGap 1.2 (Borchsenius, 2009).
DOI: 10.5061/dryad.c4r1gf3/2
title: Mathematica codes

description: Codes written for Wolfram Mathematica. Allows drift and multiple cultural alleles.
DOI: 10.5061/dryad.f274gs3/1
title: Performance of plants exposed to cadmium and of infesting spider mites

description: Each sheet represents a measurement. For each entry the trait measured is represented, as well as the plant (replicate) from which it was taken and the block. Please note that for the traits regarding the performance of spider mites several females of each species were tested using leaf discs taken from the same plant, having those the same plant ID.
DOI: 10.5061/dryad.f3b04rm/3
title: Step Differences Between the Two Groups Over Time

description: Lattice Graph: Step Differences Between the Two Groups Over Time
DOI: 10.5061/dryad.gv5k2j3/1
title: Source data

description: This folder has four matlab .mat files. This should contain raw data for Figs. 1, 2, 4, 5, 6, 7. It isn't all data for all the figures, but there is example data for those.                                                                          flash_responses.mat has data from all of Fig 1 and parts of Figs. 2 and 5; sbc_examples.mat has data for figure 6; cellular_noise.mat has data for figure 7; cone_linear_filters.mat has data from figure 4. Readme file is in the folder.
DOI: 10.5061/dryad.h11125b/1
title: Supplement to Letter on High N2O Emissions from Rice

description: This document comprises supplementary information to a Letter to the Editor published by Proceedings of the National Academy of Sciences of the United States of America (PNAS). The letter and the supplement have been written by 17 authors from the International Rice Research Institute as well as other research institutes and academe. The rationale of the letter and this supplement is to clarify the author’s position on a recent PNAS article that reports very high emissions of nitrous oxide from rice fields. Collectively, these two documents elaborate on several concerns regarding some generalizations of this PNAS article that are deemed unfounded and speculative.
DOI: 10.5061/dryad.h8j5648/1
title: Data_TBI

description: Data used to calculate decomposition constant (k) and stabilization factor (S) using the Tea Bag Index Methodology adjusted to the aquatic environment. Contains tea bag weigths, location and incubation period.
DOI: 10.5061/dryad.h8j5648/2
title: Lake_info_TBI

description: Information on TBI locations (coordinates, lake depth, year sampled, Koppen-Geiger classification and Secchi depth)
DOI: 10.5061/dryad.h8j5648/3
title: Calculation TBI aquatic.R

description: R script to calculate Tea Bag Index (decomposition constant and stabilization factor) in the aquatic environment.
DOI: 10.5061/dryad.h8j5648/4
title: data TBI leaching factor

description: Data used to calculate initial leaching factor prior to decomposition of tea bags. Tea bags were submerged in lake Wadi for 3 hours. Contains tea weights.
DOI: 10.5061/dryad.h8j5648/5
title: TBI_leaching_factor.R

description: R script used to calculate leaching factor for Tea Bag Index (TBI) aquatic.
DOI: 10.5061/dryad.j4k3t6f/1
title: Oxidative stress measures of Brent geese

description: File contains metadata and oxidative stress measures from plasma (MDA - malondialdehyde, SOD - superoxide dismutase, TAC - total antioxidant concentration, URIC - uric acid) from all sampled brent geese.
DOI: 10.5061/dryad.kd08516/1
title: duck_RAD_sequence_IDs

description: the unitag ID information for the RAD-seq data
DOI: 10.5061/dryad.kd08516/2
title: HIF_reference

description: the reference sequences from Mallard for the 26 HIF-pathway genes
DOI: 10.5061/dryad.kd08516/3
title: cinnamon_teal_HIF_RAD

description: a VCF file of the combined HIF-pathway data, and RAD-seq data (those seqs whose BLAST ID was that of a gene region)
DOI: 10.5061/dryad.kd08516/4
title: speckled_teal_HIF_RAD

description: a VCF file of the combined HIF-pathway data, and RAD-seq data (those seqs whose BLAST ID was that of a gene region)
DOI: 10.5061/dryad.kd08516/5
title: yellow_billed_pintail_HIF_RAD

description: a VCF file of the combined HIF-pathway data, and RAD-seq data (those seqs whose BLAST ID was that of a gene region)
DOI: 10.5061/dryad.m7b43mm/11
title: Simulated data for coevolution of lifespan and reversible plasticity when environment varies according to ARMA model

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for the case where the environment is simulated by an ARMA model (see supplementary note 5 for description), baseline parameter values otherwise. These results are described in Supplementary note 5 and illustrated in Supplementary figure 9. The code used to generate this data is modified from: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/12
title: Simulated data for coevolution of lifespan and reversible plasticity with ARMA modeled environment and low cost of plasticity

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for the case where the environment is simulated by an ARMA model (see supplementary note 5 for description). In addition, cost of updating is lower than baseline (kappa=0.2) baseline parameter values otherwise. These results are described in Supplementary note 5 and illustrated in Supplementary figure 11. The code used to generate this data is modified from: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/13
title: Simulated data for coevolution of lifespan and reversible plasticity with ARMA modeled environment and high cost of plasticity

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for the case where the environment is simulated by an ARMA model (see supplementary note 5 for description). In addition, cost of updating is higher than baseline (kappa=0.6) baseline parameter values otherwise. These results are described in Supplementary note 5 and illustrated in Supplementary figure 10. The code used to generate this data is modified from: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.p65mc58/34
title: POE4053_R1.fq

description: Raw Illumina reads for POE4053
DOI: 10.5061/dryad.p65mc58/37
title: LNG0106_R1.fq

description: Raw Illumina reads for LNG0106
DOI: 10.5061/dryad.p65mc58/38
title: LNG0105_R1.fq

description: Raw Illumina reads for LNG0105
DOI: 10.5061/dryad.p65mc58/39
title: LNG0104_R1.fq

description: Raw Illumina reads for LNG0104
DOI: 10.5061/dryad.p65mc58/40
title: LNG0066_R1.fq

description: Raw Illumina reads for LNG0066
DOI: 10.5061/dryad.p65mc58/41
title: LNG0103_R1.fq

description: Raw Illumina reads for LNG0103
DOI: 10.5061/dryad.p65mc58/42
title: LNG0092_R1.fq

description: Raw Illumina reads for LNG0092
DOI: 10.5061/dryad.p65mc58/43
title: LNG0095_R1.fq

description: Raw Illumina reads for LNG0095
DOI: 10.5061/dryad.p65mc58/44
title: LNG0102_R1.fq

description: Raw Illumina reads for LNG0102
DOI: 10.5061/dryad.p65mc58/45
title: LNG0100_R1.fq

description: Raw Illumina reads for LNG0100
DOI: 10.5061/dryad.q9p2q59/1
title: Raw data files

description: Raw data files used in this study
DOI: 10.5061/dryad.s654mf6/1
title: Morphological data

description: Data containing morphological measurements of house sparrows in 11 islands of the Helgeland archipelago in Northern Norway.
DOI: 10.5061/dryad.v18gc77/1
title: Fig S1 A nrDNA

description: Fig. S1. The cladogram of the ML tree from the nrDNA data (ITS, ETS) (A), and the cpDNA data (trnL-trnF, psbA-trnH) (B), showing the position of Artemisia baxoiensis. Values above branch represent Bayesian posterior probabilities (PP) and bootstrap values (BS) for maximum likelihood respectively; the dash (–) indicates PP &lt; 0.90 or BS &lt; 50%. Samples of the new species are colored in red.