cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16550109.v3
title: Readiness Index_Dataset.xlsx

description: As global changes continue, the repercussions in Africa remain profound. This is reflected notably in food and water crises across Africa. This work examines the readiness of Africa to climate change adaptation through a newly developed readiness Index (<i>ClimAdaptCap</i> Index). Readiness for climate change adaptation is driven by the intensity of climate forcing and adaptive capacity. The historical climate score data of precipitation and temperature for the period 1991-2016 were used in this investigation. The latter were culled from the World Bank Climate Portal. The historical adaptive capacity score data included proxies such as poverty and literacy rates for the period 1991-2016. These were collected from the World Bank and Macrotrends. These climate data were normalized using the normalization function to enhance interpretation, comparison/fusion into the Index. Missing poverty and literacy rate data were estimated by linear interpolation od the poverty and literacy rate data. The <i>ClimAdaptCap</i> Index was developed to compute readiness. The results show that North and Southern Africa are the readiest for climate change adaptation. West Africa is the least ready while Middle and East Africa are in the middle. Consistent is that readiness has a positive correlation with literacy rates and an inverse one with poverty rates. The developed readiness Index adequately simulates readiness to climate change adaptation in Africa and is complementary to previous frameworks of adaptation readiness.
DOI: 10.6084/m9.figshare.27169290.v1
title: Supplementary Material for: Intestinal inflammation and permeability in patients recovered from SARS-CoV-2 infection.

description: Introduction: Different works suggest a close link between Long COVID Gastrointestinal (GI) manifestations 
and the post-infection disorders of gut-brain interaction (PI-DGBIs). However, the actual mechanisms underlying long-term GI sequelae are still not clear. Our study was aimed to assess both intestinal inflammation and permeability among subjects recovered from SARS-CoV-2 infection and their eventual correlation with long-term GI sequelae.

Methods: Eighty-six subjects attending the Post-COVID Service and recovered from SARS-CoV-2 infection for six months, were investigated for Long COVID manifestations. Those subjects complaining of long-term GI symptoms were further evaluated by Rome IV questionnaire to assess PI-DGBIs. Intestinal inflammation (by fecal calprotectin, FC), and
permeability (by serum and fecal levels of zonulin) were evaluated in all subjects. The Hospital Anxiety and Depression Scale (HADS) and The Gastrointestinal Quality of Life Index (GIQLI) questionnaires were further provided to all participants.

Results: Thirty-seven subjects (43%) complained of long-term GI symptoms, while 49 subjects (57%) did not. Thirty-three subjects fulfilled Rome IV criteria for PI-DGBIs. FC values resulted higher in those subjects who did not complain GI symptoms (p=0.03), although remaining quite close to the normal range. No significant differences were shown
regarding the assessment of intestinal permeability. By GIQLI, long-term gastrointestinal sequelae were inversely correlated with quality of life (p=0.009). 

Conclusion: Long COVID GI complaints unlikely recognize underlying local inflammatory mechanisms. Since the healthcare, economic, and social burden of post‐COVID DGBIs, a deeper understanding of this emerging condition should be encouraged to improve management of the affected subjects.
DOI: 10.6084/m9.figshare.25404628.v1
title: Elsafty_RBCs_Slide_2

description: Each one of (Elsafty_RBCs_Slide_1-25) contains the field images/patches of a specific slide/patient. The names of the patches start with the respective slide/patient number, followed by the unique patch/field number. There is a total of 47,363 patches with 1076x535 pixels size from the 25 slides/patients, the counts of patches per slide/patient are as follows: 1690, 1709, 2697, 2400, 1905, 1803, 2964, 3049, 2464, 2080, 1894, 1852, 2590, 2263, 3328, 983, 1066, 935, 1131, 1237, 1874, 1393, 1277, 1199, and 1580.
DOI: 10.6084/m9.figshare.13530596.v2
title: Dataset Experiment 2

description: <b>Columns</b> <br>'Activity', 'AccX0.5Max', 'AccX0.5Min', 'AccX0.5Avg', 'AccX1Max', 'AccX1Min', 'AccX1Avg', 'AccX3Max', 'AccX3Min', 'AccX3Avg', 'AccX5Max', 'AccX5Min', 'AccX5Avg', 'AccY0.5Max', 'AccY0.5Min', 'AccY0.5Avg', 'AccY1Max', 'AccY1Min', 'AccY1Avg', 'AccY3Max', 'AccY3Min', 'AccY3Avg', 'AccY5Max', 'AccY5Min', 'AccY5Avg', 'AccZ0.5Max', 'AccZ0.5Min', 'AccZ0.5Avg', 'AccZ1Max', 'AccZ1Min', 'AccZ1Avg', 'AccZ3Max', 'AccZ3Min', 'AccZ3Avg', 'AccZ5Max', 'AccZ5Min', 'AccZ5Avg', 'GyrX0.5Max', 'GyrX0.5Min', 'GyrX0.5Avg', 'GyrX1Max', 'GyrX1Min', 'GyrX1Avg', 'GyrX3Max', 'GyrX3Min', 'GyrX3Avg', 'GyrX5Max', 'GyrX5Min', 'GyrX5Avg', 'GyrY0.5Max', 'GyrY0.5Min', 'GyrY0.5Avg', 'GyrY1Max', 'GyrY1Min', 'GyrY1Avg', 'GyrY3Max', 'GyrY3Min', 'GyrY3Avg', 'GyrY5Max', 'GyrY5Min', 'GyrY5Avg', 'GyrZ0.5Max', 'GyrZ0.5Min', 'GyrZ0.5Avg', 'GyrZ1Max', 'GyrZ1Min', 'GyrZ1Avg', 'GyrZ3Max', 'GyrZ3Min', 'GyrZ3Avg', 'GyrZ5Max', 'GyrZ5Min', 'GyrZ5Avg', 'LocX1.5Max', 'LocX1.5Min', 'LocX1.5Avg', 'LocX5Max', 'LocX5Min', 'LocX5Avg', 'LocX10Max', 'LocX10Min', 'LocX10Avg', 'LocY1.5Max', 'LocY1.5Min', 'LocY1.5Avg', 'LocY5Max', 'LocY5Min', 'LocY5Avg', 'LocY10Max', 'LocY10Min', 'LocY10Avg', 'LocZ1.5Max', 'LocZ1.5Min', 'LocZ1.5Avg', 'LocZ5Max', 'LocZ5Min', 'LocZ5Avg', 'LocZ10Max', 'LocZ10Min', 'LocZ10Avg', 'BinWc5', 'BinBathroom - motion5', 'BinBathroom- shower5', 'BinBathroom - cupboard5', 'BinKitchen - motion5', 'BinFridge5', 'BinDishwasher5', 'BinFreezer5', 'BinOven5', 'BinWc30', 'BinBathroom - motion530', 'BinBathroom- shower30', 'BinBathroom - cupboard30', 'BinKitchen - motion30', 'BinFridge30', 'BinDishwasher30', 'BinFreezer30', 'BinOven30'<br><b>Activities</b><b><br></b>1 : Walk2 : Smartphone3 : Sleep4 : PC5 : Dress6 : WC7 : Comb8 : Brush teeth9 : Wash hands10 : Shower11 : Drink water13 : Eat13 : Sweep14 : Watch TV<b><br></b>
DOI: 10.6084/m9.figshare.22270264.v1
title: Supplementary Material for: Adverse reactions associated with intravenous immunoglobulin administration in the treatment of neurological disorders: A systematic review

description: Intravenous immunoglobulin, which is used to treat multiple neurological conditions, may be associated with serious adverse reactions. The individual neurological disease characteristics associated with adverse reactions, along with strategies to prevent and treat adverse reactions, are uncertain. A systematic review was conducted of the databases PubMed, EMBASE and Cochrane library to summarise studies that report adverse reactions of intravenous immunoglobulin therapy in patients with neurological disease. There were 65 studies included in the review. The reported rates of adverse reactions vary widely but the best evidence suggests rates between 25-34% per patient. Common adverse reactions include headache and laboratory abnormalities. Less common but serious adverse reactions included thromboembolic complications and anaphylaxis. Overall, there is a lack of high-quality comparative data to definitively determine if any specific neurological indications are associated with a higher risk of adverse reactions. However, individual neurological disease characteristics possibly associated with an increased likelihood of adverse reactions include limited mobility (as in certain neuromuscular conditions), paraproteinaemia (as in certain peripheral neuropathies) and cardiomyopathy (as in certain myopathies). There is limited evidence to support the effectiveness of prevention and treatment strategies, which may include modification to dose, reduced infusion rate, and premedication. Further studies regarding methods to prevent and treat IVIg ARs in neurology patients are required.
DOI: 10.6084/m9.figshare.27887301.v1
title: Supplementary Material for: Endovascular management of a portal vein pseudoaneurysm following pancreatoduodenectomy: a case report and review of literature

description: Introduction: 
Portal vein pseudoaneurysm is a rare but potential life-threatening complication following pancreatoduodenectomy. We herein report on the successful, minimally invasive treatment of this serious complication. 

Case presentation: 
A 68-year-old male patient who had undergone pancreatoduodenectomy with portal vein wedge resection at another facility presented to our department due to persistent bile leakage and intermittent bleeding. Abdominal computed tomography (CT) scanning demonstrated a large fluid collection surrounding the pancreatojejunostomy, with an occlusion of the common hepatic artery as well as a portal vein pseudoaneurysm. Treatment was performed by means of a minimally invasive approach, including endovascular portal vein stent placement and percutaneous transhepatic biliary drainage (PTBD) through the dehiscent hepaticojejunostomy. This was followed by the placement of a percutaneous pigtail in the peripancreatic fluid collection for adequate drainage. Antibiotics were administered for a total duration of six weeks following stent placement. In the subsequent weeks, the PTBD could be internalized and the pigtail removed, after which patient was discharged. During outpatient visits, a contrast injection through the PTBD confirmed the absence of bile leakage, after which the drain could be removed. 

Conclusion: 
This article presents one of the few published cases of portal vein pseudoaneurysm following pancreatoduodenectomy and underscores the vital role of minimally invasive endovascular stent and PTBD placement in managing this rare and potentially lethal complication.
DOI: 10.6084/m9.figshare.953671.v1
title: Advancing Bag-of-Visual-Words Representations for Lesion Classification in Retinal Images

description: Diabetic Retinopathy (DR) is a complication of diabetes that can lead to blindness if not discovered in time. Automated screening algorithms have the potential to improve identification of patients who need further medical attention. However, the algorithms must be accurate in order to be useful for clinical application. The bag-of-visual-words (BoVW) algorithm utilizes a maximum-margin binary classifier in a flexible framework that is able to detect the most common DR-related lesions such as microaneurysms, cotton-wool spots and hard exudates. BoVW was developed to bypass the need for pre- and post-processing of the retinographic images, as well as including specific ad hoc techniques for identification of each type of lesion. An extensive evaluation of the BoVW model, using three large retinograph datasets (DR1, DR2 and Messidor) with different resolution and collected by different healthcare personnel, was performed. The results demonstrate that the BoVW classification approach can identify different lesions within an image without having to utilize different algorithms for each lesion and therefore reduces processing time and provides a more flexible diagnostic system. BoVW is based on sparse detection with a Speeded-Up Robust Features (SURF) local descriptor and semi-soft coding with max pooling. The best BoVW representation for retinal image classification was an area under the receiver operating characteristic curve (AUC-ROC) of 97.8% (exudates) and 93.5% (red lesions) when applying a cross-dataset validation protocol. To assess the accuracy for detecting cases, which require referral within one year, the sparse extraction technique associated with semi-soft coding and max pooling obtained an AUC of 94.2±2.0%, outperforming current methods. These results indicate that, for retinal image classification tasks in clinical practice, BoVW is equal and, in some instances, surpasses results obtained using dense detection of the low-level descriptors, which has gained almost unanimous acceptance in recent computer vision and image processing literature.
DOI: 10.6084/m9.figshare.28737344.v1
title: The PRISMA-RR (interim guidance) checklist accompanying a paper by Bhojani et al. (2025)

description: Completed Checklist for "Towards assessing the tobacco control law enforcement systems within Indian states: a rapid review and document analysis"
DOI: 10.6084/m9.figshare.4238987.v2
title: enwiki-20161001.text.bz2

description: Cleaned text from enwiki-20161001-pages-articles.xml.bz2, saved as enwiki-20161001.text.bz2. The data can be used for training word embedding models (e.g., Word2Vec).
DOI: 10.6084/m9.figshare.940987.v1
title: ERCB-Nephromine-EuRenOmics Database

description: The main goal of WP7 is to develop a multiscalar view of rare renal diseases by integrating diverse large-scale data sources. Data generated in WP 2-6 as well as data from cooperating consortia and publically available datasets will be implemented in the EURenOmics platform. The European Renal cDNA Bank (ERCB) hosts over 2600 renal biopsies with anonymized clinical parameters. In this consortium more than 550 genome-wide Affymetrix-based datasets from glomerular and tubulointerstitial specimen from 289 patients have been generated. Out of these, a dataset comprising of 369 samples (183 glomerular, 186 tubulointerstitial) and their basic clinical data has been selected to be integrated in the EURenOmics database. These include data from patients with minimal change disease (n=24), focal segmental glomerulosclerosis (n=47), membranous nephropathy (n=39), but also data from patients with diabetic nephropathy (n=11), hypertensive nephropathy (n=35), IgA nephropathy (n=52) and lupus nephritis (n=64). Pretransplant biopsies from living donors were used as controls (n=84). Another resource for transcriptomic data is Nephromine (http://nephromine.org). It is a web-based kidney specific systems biology search engine that provides data from 20 publically available gene expression datasets from 1757 samples (murine and human), incorporates clinical data and allows various analyses (differential gene expression, coexpression, outlier analysis and concept association). A basic database concept has been defined and a web-based functional data repository allowing a smooth up-and download as well as sharing data amongst partners has been generated. Uploaded data will be used to establish a multilevel analysis domain (EuRenOmics Database), which allows the integration of data from different –omics platforms as well as the implementation of clinical information. The interactive platform provides standardized and harmonized datasets and uses existing architectures from Genomatix’s GePS and ElDorado databases. This search engine will provide a central bioinformatics platform which allows addressing mechanistic, diagnostic and therapeutic challenges at the systems biology level.
DOI: 10.6084/m9.figshare.20338716.v1
title: phage tail sequence.fasta

description: Putative phage tail fiber sequence derived from Clostridioides difficile HN10, ptsL and ptsM genes, complete CDS
DOI: 10.6084/m9.figshare.23827842.v1
title: Supplementary Material for: A heterozygous variant of FGF13 caused X-linked developmental and epileptic encephalopathy 90 in a Chinese family

description: Developmental and epileptic encephalopathy (DEE) refers to a group of severe epilepsy encephalopathy and development disorders, and its typical clinical features include seizures, drug resistance, and developmental delay or regression. To date, limited studies have reported DEEs driven by FGF13. Here, we reported a girl with DEE90 caused by variant of FGF13. Her electroencephalography (EEG) showed discontinuous hypsarrhythmia, and a heterozygous nonsynonymous variant in FGF13 [NM_004114.4: c.5C&gt;G, p.(Ala2Gly)] was identified from the proband. The variant was not reported in public databases such as gnomAD and Exome Aggregation Consortium (ExAC), and predicted to be damaging to proteins and classified as likely pathogenic (LP) according to the ACMG guidelines. The seizure was finally controlled by a combination of ACTH + zonisamide (10 mg/kg.d) + levetiracetam (52 mg/kg.d) + clonazepam (0.7 mg/kg.d).
DOI: 10.6084/m9.figshare.7928972.v1
title: gVCF_NA19403

description: 1000 Genomes gVCF mapped to hs37d5 for NA19403. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.11908227.v1
title: Data S3. Environmental variables for extinction scenarios

description: Environmental variables for control and extinction scenarios<br>
DOI: 10.6084/m9.figshare.25029428.v2
title: Phylogenomic trees and corresponding trimmed and concatenated phylogenomic alignment of family Midichloriaceae (with Anaplasmataceae and Rickettsiaceae root) on 179 genes.

description: <br>Midichloriaceae_phylogenomic_LG+C60+I+G4.contree - phylogenomic tree file calculated under LG+C60+I+G4 substitution model.Midichloriaceae_phylogenomic_LG+F+R5.contree - phylogenomic tree file calculated under LG+F+R5 substitution model.<br>Midichloriaceae_concatenated_trimmed.fas - alignment based on dataset created by Gianotti et al. 2022 (DOI: 10.1128/aem.02432-21), supplemented orthologs from three additional genomes. For further details, see the publication.
DOI: 10.6084/m9.figshare.28640228.v1
title: Supplemental data for https://doi.org/10.3390/cells13211750

description: Effects of ensifentrine, a novel dual phosphodiesterase (PDE3/4) inhibitor, on lung endothelial and alveolar epithelial dysfunction induced by MRSA<i> (</i>methicillin-resistant<i> Staph. aureus, </i>a common cause of ARDS<i>).</i>
DOI: 10.6084/m9.figshare.5346181.v1
title: Supplementary Material for: The Impact of Treatment Preferences in Second-Line Chemotherapy on the Prognosis of HER2-Negative Metastatic Breast Cancer

description: <i>Objective:</i> We assessed the impact of treatment preferences in second-line chemotherapy on breast cancer prognosis using the SELECT BC study. <i>Methods:</i> The SELECT BC study was performed in patients with HER2-negative metastatic breast cancer treated with initial chemotherapy. From these patients, 618 were assigned to 2 groups (S-1 group, 309; taxane group, 309). The S-1 and taxane groups were each subdivided into 3 groups: crossover group, protocol-recommended group, and other group, and the analysis of overall survival (OS) was performed using Cox regression with inverse probability weighting, to adjust for postrandomization confounding. <i>Results:</i> In the taxane group, the OS of the crossover group (39.6 months) was better than that of the protocol-recommended group (35.7 months) and the other chemotherapy group (36.9 months) (vs. the protocol-recommended group, HR 0.72 [95% CI 0.52-0.98], <i>p </i>= 0.037; vs. the other chemotherapy group, HR 0.71 [95% CI 0.43-1.18], <i>p = </i>0.183). In the S-1 group, there was no statistically significant difference in OS between the 3 groups. <i>Conclusion:</i> The study of the combination of first-line chemotherapy and second-line chemotherapy showed that S-1 might be recommended as a second-line chemotherapy in patients in whom taxane was the primary chemotherapy.
DOI: 10.6084/m9.figshare.22004504.v1
title: China regional multimodal fusion gross primary productivity data (1850-2100),

description: China regional gross primary productivity value data. Time range 1850-2014, including historical period in the future period 2015-2100 (contains four different Shared future period of social and economic path: SSP1-2.6, SSP2-4.5, SSP3-7.0, SSP5-8.5).The spatial resolution of 0.25 °.This data is based on the deep learning method, adopt the GPP data for reference, the data fusion of 23 CMIP6 downscaling model GPP. Under the background of climate change, the data can be used in the vegetation correlation analysis.
DOI: 10.6084/m9.figshare.21586701.v1
title: meta_analysis_raw_data_and_code.zip

description: The otu table and related processing code for meta-analysis of dilution-to-extinction studies.
DOI: 10.6084/m9.figshare.22144967.v1
title: Data and R codes for Chen-2023

description: Meta-analysis dataset and R codes for the N deposition effect.
DOI: 10.6084/m9.figshare.25822840.v2
title: Merged EXPORTS NA UVP data paperData.zip

description: This EXPORTS North Atlantic UVP dataset is in matlab and netcdf formats. It is associated with Dynamics of Aggregates and Sinking Carbon Fluxes in a Turbulent Ocean, https://doi.org/10.31223/X58709Data consists of particle size distribution (psd) profiles from the three ship that were intercalibrated and merged, ordered by time. The profiles were standardized to 500m (padded with NaNs if the maximum depth was less than 500m and truncated if deeper than 500m).The psd relative uncertainty and the biovolume are also included. Each cast has associated location (time, lat, lon) and info to specify the ship, cast number, and distance to the estimated eddy center (r2ec).The folder “examples” contains matlab scripts demonstrating some data usage.<br><br>
DOI: 10.6084/m9.figshare.28321523.v1
title: Supplementary Material for: A comparative study of surgery versus radiation therapy on the risk of cardiovascular disease mortality in patients with early-stage non-small cell lung cancer

description: Objective: Non-small cell lung cancer (NSCLC) lung cancer continues to be a substantial issue in public health, and cardiovascular disease (CVD) is also an important cause of death in NSCLC patients. There is a lack of studies comparing the effects of surgery and radiation therapy on the risk of CVD-mortality in patients with early-stage NSCLC. This study planned to compare the effects of surgery alone and radiation therapy alone on the risk of CVD-mortality in patients with early-stage NSCLC.
Methods: In this cohort study, the data of 32896 participants with NSCLC at stage I or stage II in 2010-2015 were retrieved from the surveillance, epidemiology, and end results (SEER) database. The primary endpoint of this study was CVD mortality, indicating patients died of CVDs and the follow-up was ended in 2020. Univariable Cox regression model was applied to identify covariates. The associations of surgery or radiation therapy with CVD-mortality in in patients with early-stage NSCLC were evaluated via univariable and multivariable Cox regression models and Fine-Gray competitive risk model. Hazards ratio (HR) and confidence interval (CI) were computed.
Results: The median follow-up time was 48.00 (17.00, 60.00) months. There were 854 (6.45%) participants died of CVD in the radiation therapy group and 729 (5.35%) participants died of CVD in the surgery group. After adjusting for confounding factors, the elevated risk of CVD mortality in patients with early-stage NSCLC was observed in patients receiving radiation therapy compared to those receiving surgery (HR=2.33, 95%CI: 2.02-2.69). In the competing risk model, the risk of CVD mortality in patients with early-stage NSCLC was also increased in patients receiving radiation therapy (HR=1.37, 95%CI: 1.2.6-1.55). In the PSM group, the risk of CVD mortality in patients with early-stage NSCLC was also increased in patients who underwent radiation therapy (HR=2.62, 95%CI: 2.12-3.24). Subgroup analysis also revealed that radiation therapy was correlated with increased risk of CVD mortality in NSCLC patients with tumor size ≥50 mm or &lt;50 mm, the original primary site in the left or right, histologic types of squamous cell NSCLC or adenocarcinoma NSCLC, stage I and II, and patients ≥ 65 years or &lt; 65 years. 
Conclusions: Radiation therapy was associated with elevated risk of CVD mortality compared to surgery in patients with early-stage NSCLC.
DOI: 10.6084/m9.figshare.14597820.v1
title: Clean Dataset

description: These are time-averaged velocity datasets for the clean Newtonian and non-Newtonian simulations.
DOI: 10.6084/m9.figshare.23868972.v1
title: Sharma et al., 2023. TWISP: A Transgenic Worm for Interrogating Signal Propagation in <i>C. elegans</i>

description: The dataset corresponding to Sharma et al., 2023, TWISP: A Transgenic Worm for Interrogating Signal Propagation in <i>C. elegans</i>.Datasets are listed in folders with corresponding figure and supplementary table.
DOI: 10.6084/m9.figshare.7884956.v1
title: gVCF_HG01182

description: 1000 Genomes gVCF mapped to hs37d5 for HG01182. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307