cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5127739.v1
title: Supplementary Material for: DuOx2 Promoter Regulation by Hormones, Transcriptional Factors and the Coactivator TAZ

description: The production of H<sub>2</sub>O<sub>2</sub>, which is essential to thyroid hormone synthesis, involves two NADPH oxidases: dual oxidases 1 and 2 (DuOx1 and DuOx2). A functional study with human DuOx genes and their 5′-flanking regions showed that DuOx1 and -2 promoters are different from thyroid-specific gene promoters. Furthermore, their transcriptional activities are not restricted to thyroid cells. While regulation of Tg (thyroglobulin) and TPO (thyroperoxidase) expression have been extensively studied, DuOx2 promoter regulation by hormones and transcriptional factors need to be more explored. Herein we investigated the role of TSH, insulin and insulin-like growth factor 1 (IGF-1), as well as the cAMP effect on DuOx2 promoter (ptx41) activity in transfected rat thyroid cell lines (PCCL3). We also assessed DuOx2 promoter activity in the presence of transcriptional factors crucial to thyroid development such as TTF-1 (thyroid transcription factor 1), PAX8, CREB, DREAM, Nkx2.5 and the coactivator TAZ in HeLa and HEK 293T-transfected cells. Our results show that TSH and forskolin, which increase cAMP in thyroid cells, stimulated DuOx2 promoter activity. IGF-1 led to pronounced stimulation, while insulin induction was not statistically different from DuOx2 promoter basal activity. All transcriptional factors selected for this work and coactivator TAZ, except DREAM, stimulated DuOx2 promoter activity. Moreover, Nkx2.5 and TAZ synergistically increased DuOx2 promoter activity. In conclusion, we show that DuOx2 expression is regulated by hormones and transcription factors involved in thyroid organogenesis and carcinogenesis, reinforcing the importance of the control of H<sub>2</sub>O<sub>2</sub> generation in the thyroid.
DOI: 10.6084/m9.figshare.6200792.v1
title: Real-time in vivo Global Transcriptional Dynamics During Plasmodium falciparum Blood-stage Development

description: Individual P. falciparum gene expression profilesData obtained by cDNA microarray for hourly timepoints throughout the 48h intraerythrocytic development cycle (IDC) were normalized and modeled to determine the contribution of nascent transcription (red) and stabilization (blue) to the total abundance profile (black) for each gene. Calculated expression values were plotted at hourly intervals throughout the IDC.
DOI: 10.6084/m9.figshare.21779846.v1
title: Substantial burial of terrestrial microplastics in the Three Gorges Reservoir, China

description: Raw data and source data for the figures in ‘Substantial burial of terrestrial microplastics in the Three Gorges Reservoir, China’
DOI: 10.6084/m9.figshare.15131976.v2
title: Data set for the manuscript "Improving a Biogeochemical Model to Simulate Microbial-mediated Carbon Dynamics in Agricultural ecosystems".

description: This data set contains the DNDC model, model input files, and all data used in the paper "Improving a Biogeochemical Model to Simulate Surface Energy, Greenhouse Gas Fluxes, and Radiative Forcing for Different Land Use Types in Northeastern United States".
DOI: 10.6084/m9.figshare.22634017.v1
title: Assessing the Relationship between Ceiling Height and Emotional Response in Art Galleries through Editable 360-Degree VR Panoramic Scenes

description: This study investigates the relationship between ceiling height and emotional responses in art galleries<br> using editable 360-degree VR panoramic scenes. Although prior research has explored the influence of<br> spatial dimensions on human emotions, little attention has been given to the specific impact of ceiling<br> height in art gallery settings. Our study employed an experimental design, presenting participants with<br> virtual art gallery environments with varying ceiling heights, and assessed their emotional responses<br> through self-report measures. The findings indicate that ceiling height significantly affects specific<br> emotions, such as disgust and joy, while the influence on other emotions, like fear, anger, sadness,<br> and surprise, is less evident. The study highlights the potential of editable 360-degree panoramic<br> photo scene modeling as a valuable tool for architectural research and emphasizes the importance of<br> considering spatial dimensions in the design of art gallery en
DOI: 10.6084/m9.figshare.29092418.v1
title: LibCarna-Python: Maximum Intensity Projection of Cell Nuclei

description: Screenshot of the MIP example from https://libcarna.readthedocs.io/en/latest/examples/cells.html
DOI: 10.6084/m9.figshare.7830233.v1
title: Frequency of sero-prevalence among LMCI and LMI

description: Seroprevalence data<br>
DOI: 10.17632/5p3drcd262
title: Supplementary Table 1

description: Mycosis fungoides patient- and physician-reported outcomes in the total cohort, AYA, and adults. Results by specific treatment are also shown (n=0 for AYA topical targretin and oral targretin). Some patients received multiple treatment types. *= statistically significant between adults versus AYA by Chi-Squared analysis at p&lt;0.05. **= statistically significant reduction in itch by unpaired t-test at p&lt;0.05.
DOI: 10.6084/m9.figshare.18551420.v3
title: Deconstructing Gastrulation at Single-Cell Resolution

description: This repository contains two main packages that were developed as a part of:"Deconstructing Gastrulation at Single-Cell Resolution" by Tomer Stern, Stanislav Y. Shvartsman, and Eric F. Wieschaus, Princeton University, 2021.<br>--------------<br><br>Package #1: Segmentation and tracking code and demo data.To use it - download the file, unzip it, and follow the instructions on the "Instructions.docx" file.<br>--------------<br>Package #2: Data analysis (includes code and data for plotting the analyses presented in the manuscript).<br>It contains whole embryo cell segmentation and tracking of the two embryos used in the referenced publications, as well as several extracted features, such as cell areas and intercalation events.<br>It also contains code assisting in loading the data, visualizing it, and calculating a variety of additional morphological attributes.<br>To use it, download the file, unzip all into a single directory, open the "DG_main_script" script in matlab, and follow the instructions at the top comment.<br>--------------<br>For any questions / comments / assistance in setting the code up or using it, please feel free to contact me at:tstern@princeton.eduor:stern.tomer@gmail.com<br>Happy gastrulation!<br>
DOI: 10.6084/m9.figshare.25592406.v2
title: China’s direct investment flows in Kazakhstan, 1993-2023.

description: China’s direct investment flows in Kazakhstan, 1993-2023.
DOI: 10.6084/m9.figshare.27102553.v2
title: Comorbidity Networks From Population-Wide Health Data: Aggregated Data of 8.9M Hospital Patients (1997-2014)

description: Comorbidity networks have become a valuable tool to support data-driven biomedical research.Yet, studies often are severely hindered by the availability of the necessary comprehensive data, often due to the sensitivity of health care information.This study presents a population-wide comorbidity network dataset derived from 45 million hospital stays of 8.9 million patients over 17 years in Austria.We present co-occurrence networks of hospital diagnoses, stratified by age, sex, and observation period in a total of $96$ different subgroups.For each of these groups we report a range of association measures (e.g., count data, and odds ratios) for all pairs of diagnoses.The dataset provides the possibility to researchers to create their own, tailor-made comorbidity networks from real patient data that can be used as a starting point in quantitative and machine learning methods. This data platform is intended to lead to deeper insights into a wide range of epidemiological, public health, and biomedical research questions.
DOI: 10.6084/m9.figshare.7798451.v3
title: Hybrid human mouse genome files

description: Files required for mapping to combined human-mouse (hg19-mm10) genome
DOI: 10.6084/m9.figshare.11977680.v1
title: Role of pharmacogenetics and clinical parameters on nevirapine plasma concentration among HIV-1 patients receiving antiretroviral therapy in Kenya

description: These data provide clinical outcome in nevirapine plasma concentration, pharmacogenetics and clinical data
DOI: 10.17632/d7pmd8rkjp
title: E-Data1 Data Envelopment Analysis to Determine Reliability Targets for Power Distribution Systems

description: This is Edata1 for the paper Data Envelopment Analysis to Determine Reliability Targets for Power Distribution Systems. This includes the data for 1000 distribution feeders discussed in the main paper.
DOI: 10.17632/vrt3wdnf6y
title: PAICE Suite Analysis of Coding and Non-Coding Genes in Macrophages

description: Supplemental File 1 contains the ECHO analysis of all macrophage protein-coding RNAs. Supplemental File 2 contains the ECHO analysis of all macrophage proteins. Supplemental File 3 contains the list of proteins that required manual identification or deletion preceding analysis. Supplemental File 4 contains the ENCORE analysis of all macrophage protein-coding RNAs. Supplemental File 5 contains the ENCORE analysis of all macrophage proteins. Supplemental File 6 contains the MOSAIC analysis of the comparison between mRNA and protein. Supplemental File 7 contains raw TPM values of detected ncRNA. Supplemental File 8 contains the ECHO analysis of the ncRNA categories for pseudogenes and snoRNA. Supplemental File 9 contains the ECHO analysis of the ncRNA category for lncRNA. Supplemental File 10 contains a list of the circadian, disease-associated mouse lncRNAs analyzed using the LncRNADisease v2.0 database and their human orthologs. Supplemental File 11 contains the list of spliceosomal genes adapted from KEGG (Kyoto Encyclopedia of Genes and Genomes) to identify the spliceosomal transcripts and proteins in the spliceosomal complexes. Supplemental File 12 contains the ECHO analysis of the ncRNA category for snRNA. Supplemental File 13 contains the NCBI annotation of all snRNAs.
DOI: 10.6084/m9.figshare.5100727.v4
title: Alnus incana chorology

description: Distribution map of grey alder (<i>Alnus incana</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.7294/28851398.v2
title: 3D flying bat sample mesh and kinematic reconstructions -- brunei 2023 bat test 13 1

description: Dataset contains the initial mesh and kinematic reconstruction of a flying bat, H. cervinus.Bats are capable of highly dexterous flight maneuvers that relyheavily on highly articulated hand skeletons and malleable wingmembranes. To understand the underlying mechanisms, large amounts ofdetailed data on bat flight kinematics are required. Conventionalmethods to obtain these data have been based on tracinglandmarks and require substantial manual efforts. To generate 3Dreconstructions of the entire geometry of a flying bat in a fullyautomated fashion, the current work has developed an approach wherethe pose of a trainable articulated mesh template that is based on thebat's anatomy is optimized to fit a set of binary silhouetterepresenting views from different directions of the flying bat. Thisis followed by post-processing to smooth the reconstructedkinematics and simulate the non-rigid motion of the wingmembranes. To evaluate the method, 10 flight sequences that represent several flight maneuvers (e.g., straight flight, takeoff, u-turn)and were recorded in a flight tunnel instrumented with 50 synchronizedcameras have been reconstructed. A total of 4,975 reconstructions aregenerated in this fashion and subject to qualitative and quantitativeevaluations with promising results. The reconstructions are to be usedfor quantitative analyses of the maneuvering kinematics and theassociated aerodynamics.
DOI: 10.25452/figshare.plus.23932695.v2
title: Severe COVID-19 Patient Cohort Clinical History

description: This dataset contains the patient history for the severe COVID-19 patient cohort analysed in "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients".All data has been anonymised and all links between the identity of patients and the datasets shared were removed. All patients were informed and voluntary consents were obtained in writing.See related materials at: https://doi.org/10.25452/figshare.plus.c.6347534
DOI: 10.6084/m9.figshare.14287331.v1
title: Estimation of development of electricity end-use by the residential sector in Brazil by geographic region

description: Abstract The study estimates the structure of end-use electricity consumption by residential sector in the years 2005 and 2019, segregated by eachBrazilian geographic region. The method used data from the survey of Household Appliances and Consumption Habits from the years2004-2006 and 2018-2019 and applied statistical techniques. The results showedregional singularities in thedevelopment of the consumption structure. The maindevelopments in the estimated structure between the years 2005 and 2019 wereanincrease in the end-use consumption in the Environmental Comfort Appliances category, and the continued high participation of the consumption of theFood Conservation category. There was a decrease in the share of WaterHeating category end-use consumption in all regions, except in the South. The studyalsoshowed a predominance of end-use consumption ofappliances in the Environmental Comfort, Heating Water and Food Conservation categories, ranging from 82% to 91% according to the different regions. The findings indicate high potential for implementing energy efficiency measures, however, it must be stressed that regional consumption patterns must be considered in order to achieve effective results.
DOI: 10.5281/zenodo.15241784
title: Tibetan Plateau ecosystem change ove the past 1000 years

description: We used the Community Land Model (CLM4.5), which integrates carbon-nitrogen biogeochemistry (BGC) and dynamic vegetation (DV) modules, to simulate the changes in the Tibetan Plateau’s terrestrial ecosystem from 850 CE to 2020 CE, focusing on the variables of permafrost area, forest cover, and carbon stock.
DOI: 10.5281/zenodo.15241785
title: Tibetan Plateau ecosystem change ove the past 1000 years

description: We used the Community Land Model (CLM4.5), which integrates carbon-nitrogen biogeochemistry (BGC) and dynamic vegetation (DV) modules, to simulate the changes in the Tibetan Plateau’s terrestrial ecosystem from 850 CE to 2020 CE, focusing on the variables of permafrost area, forest cover, and carbon stock.
DOI: 10.15468/dl.wgxju3
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paris polyphylla latifolia"
 ]
}

 The dataset includes 44 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024968-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtvjce
title: Occurrence Download

description: A dataset containing 21390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.15.11_1",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 21390 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011593-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3s7gbf
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Peces del Museo de Historia Natural C.J. Marinkelle"
 ]
}

 The dataset includes 256 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011594-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.12615.56488
title: IO STEPS Analysis of PERS009-3S5 903 1 25 Real World Data by the Persian Curve (PC) IO STEP 07 PERSIAN QUANTILE COMPLETE.JPEG
DOI: 10.15468/dl.8j9rvq
title: Occurrence Download

description: A dataset containing 182771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ECU.17_1, ECU.18_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 182771 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011597-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mvn52
title: Occurrence Download

description: A dataset containing 8948 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea aquatica"
 ]
}

 The dataset includes 8948 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011595-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18371676
title: TABLE 2 in New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen

description: TABLE 2. Data matrix of eighteen Phlugiolopsis species used in the Brooks Parsimony Analysis (BPA) employing the zoogeographical subregions of China as opterational geographic units.
SpeciesAera12345678910111213141517181920212223242526272829303132333435OUT0000000000000000000000000000000000Va0100010000000100010100100110001111Vb0000001000000000000010000001001011VIa0000100000000000000100000010001011VIb1011000110100010111011011111111111VIIa0000000001000001000001001000110111VIIb0000000000011000000000100000100111
continued.
description: Published as part of Bian, Xun & Shi, Fuming, 2018, New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen, pp. 344 in Zootaxa 4532 (3) on page 344, DOI: 10.11646/zootaxa.4532.3.2, http://zenodo.org/record/2615397
DOI: 10.5281/zenodo.18371677
title: TABLE 2 in New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen

description: TABLE 2. Data matrix of eighteen Phlugiolopsis species used in the Brooks Parsimony Analysis (BPA) employing the zoogeographical subregions of China as opterational geographic units.
SpeciesAera12345678910111213141517181920212223242526272829303132333435OUT0000000000000000000000000000000000Va0100010000000100010100100110001111Vb0000001000000000000010000001001011VIa0000100000000000000100000010001011VIb1011000110100010111011011111111111VIIa0000000001000001000001001000110111VIIb0000000000011000000000100000100111
continued.
description: Published as part of Bian, Xun & Shi, Fuming, 2018, New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen, pp. 344 in Zootaxa 4532 (3) on page 344, DOI: 10.11646/zootaxa.4532.3.2, http://zenodo.org/record/2615397
DOI: 10.5281/zenodo.18371679
title: TABLE 3 in New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen

description: TABLE 3. Consensus configuration, variances at each landmark for aligned specimens and relative contribution of each landmark point (measured as the ‘Sum of Squares’) recorded from the GPA configuration.
landmarkConsensus configuration:s2Sum of Squares1-0.308670.169580.000157840.007662-0.286600.136030.000077640.043453-0.263460.101630.000039570.071804-0.239540.069480.000054670.083065-0.214620.038240.000074880.058086-0.185430.009480.000068730.036247-0.15157-0.011990.000075100.042238-0.11445-0.030300.000087680.030519-0.07536-0.042050.000092720.0348410-0.03557-0.049860.000060430.05884110.00533-0.053330.000063130.06982120.04546-0.054800.000060970.05888130.08697-0.053800.000057310.04784140.12809-0.051850.000047720.05658150.16832-0.046660.000034670.05386160.20864-0.040090.000020610.06011170.24842-0.033210.000021600.05517180.28867-0.026380.000036220.06478190.32773-0.018980.000060230.05678200.36765-0.011150.000128850.00948
description: Published as part of Bian, Xun & Shi, Fuming, 2018, New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen, pp. 359 in Zootaxa 4532 (3) on page 359, DOI: 10.11646/zootaxa.4532.3.2, http://zenodo.org/record/2615397
DOI: 10.5281/zenodo.18371678
title: TABLE 3 in New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen

description: TABLE 3. Consensus configuration, variances at each landmark for aligned specimens and relative contribution of each landmark point (measured as the ‘Sum of Squares’) recorded from the GPA configuration.
landmarkConsensus configuration:s2Sum of Squares1-0.308670.169580.000157840.007662-0.286600.136030.000077640.043453-0.263460.101630.000039570.071804-0.239540.069480.000054670.083065-0.214620.038240.000074880.058086-0.185430.009480.000068730.036247-0.15157-0.011990.000075100.042238-0.11445-0.030300.000087680.030519-0.07536-0.042050.000092720.0348410-0.03557-0.049860.000060430.05884110.00533-0.053330.000063130.06982120.04546-0.054800.000060970.05888130.08697-0.053800.000057310.04784140.12809-0.051850.000047720.05658150.16832-0.046660.000034670.05386160.20864-0.040090.000020610.06011170.24842-0.033210.000021600.05517180.28867-0.026380.000036220.06478190.32773-0.018980.000060230.05678200.36765-0.011150.000128850.00948
description: Published as part of Bian, Xun & Shi, Fuming, 2018, New taxa of the genus Phlugiolopsis (Orthoptera: Tettigoniidae: Meconematinae) from Yunnan, China, with comments on the importance to taxonomy of the left tegmen, pp. 359 in Zootaxa 4532 (3) on page 359, DOI: 10.11646/zootaxa.4532.3.2, http://zenodo.org/record/2615397