cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26622067
title: Additional file 4 of Global analysis of suppressor mutations that rescue human genetic defects

description: Additional file 4: Data S3. Suppressor gene predictions using the functional prioritization model. For each of the 93 query genes in our dataset, all genes in the human genome were ranked based on their likeliness of being a suppressor gene using a functional prioritization model. Listed are query gene name, suppressor gene name, prediction score, and prediction rank. Prediction scores range from 0 to 1111. Higher prediction scores or lower prediction ranks correspond to a higher likeliness of a gene to be a suppressor of the given query gene.
DOI: 10.6084/m9.figshare.26622073.v1
title: Additional file 6 of Global analysis of suppressor mutations that rescue human genetic defects

description: Additional file 6: Data S5. Experimental validation of predicted suppressor genes. Experimental identification of suppressor genes of FANCA using CRISPR-Cas9 knockout screens. This file contains normalized read counts for 71,090 gRNAs across 12 samples: two timepoints (0 and 18 days of cisplatin treatment) of one wild-type and two FANCA knockout cell lines each screened in duplicate.
DOI: 10.6084/m9.figshare.26622091.v1
title: Additional file 7 of Profiles and integration of the gut microbiome and fecal metabolites in severe intrahepatic cholestasis of pregnancy

description: Additional file file 7: Table S2. Key differential KEGG Orthologies among groups of control, mild ICP and severe ICP
DOI: 10.15468/dl.qjxwrw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.746796 -33.078905, 148.746796 -33.081151, 148.749042 -33.081151, 148.749042 -33.078905, 148.746796 -33.078905))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068212-240626123714530/datasets/export for details.
DOI: 10.15468/dl.qdz8t8
title: Occurrence Download

description: A dataset containing 1848 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephoron virgo (Olivier, 1791)"
 ]
}

 The dataset includes 1848 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068213-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26622091
title: Additional file 7 of Profiles and integration of the gut microbiome and fecal metabolites in severe intrahepatic cholestasis of pregnancy

description: Additional file file 7: Table S2. Key differential KEGG Orthologies among groups of control, mild ICP and severe ICP
DOI: 10.6084/m9.figshare.24234113
title: Additional file 1 of Leptospirosis in humans and selected animals in Sub-Saharan Africa, 2014–2022: a systematic review and meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.26622088.v1
title: Additional file 6 of Profiles and integration of the gut microbiome and fecal metabolites in severe intrahepatic cholestasis of pregnancy

description: Additional file file 6: Table S1. Differential bacteria at genus level among groups of control, mild ICP and severe ICP
DOI: 10.6084/m9.figshare.26622130
title: Additional file 6 of Gastric cancer-derived LBP promotes liver metastasis by driving intrahepatic fibrotic pre-metastatic niche formation

description: Additional file 6.
DOI: 10.6084/m9.figshare.26622127.v1
title: Additional file 5 of Gastric cancer-derived LBP promotes liver metastasis by driving intrahepatic fibrotic pre-metastatic niche formation

description: Additional file 5.
DOI: 10.6084/m9.figshare.24240129
title: Additional file 1 of Gastric cancer-derived LBP promotes liver metastasis by driving intrahepatic fibrotic pre-metastatic niche formation

description: Additional file 1.
DOI: 10.15468/dl.r9y6tg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.758025 -33.078905, 148.758025 -33.081151, 148.764762 -33.081151, 148.764762 -33.085643, 148.773746 -33.085643, 148.773746 -33.078905, 148.758025 -33.078905)), ((148.773746 -33.085643, 148.773746 -33.087889, 148.775991 -33.087889, 148.775991 -33.085643, 148.773746 -33.085643)), ((148.775991 -33.087889, 148.775991 -33.090134, 148.780483 -33.090134, 148.780483 -33.087889, 148.775991 -33.087889)), ((148.780483 -33.087889, 148.782729 -33.087889, 148.782729 -33.085643, 148.780483 -33.085643, 148.780483 -33.087889)), ((148.780483 -33.085643, 148.780483 -33.078905, 148.775991 -33.078905, 148.775991 -33.085643, 148.780483 -33.085643)))"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068214-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9q5j7r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.791712 -33.081151, 148.791712 -33.085643, 148.796204 -33.085643, 148.796204 -33.081151, 148.791712 -33.081151)), ((148.791712 -33.081151, 148.791712 -33.078905, 148.789466 -33.078905, 148.789466 -33.081151, 148.791712 -33.081151)), ((148.796204 -33.085643, 148.796204 -33.087889, 148.798449 -33.087889, 148.798449 -33.090134, 148.796204 -33.090134, 148.796204 -33.096872, 148.800695 -33.096872, 148.800695 -33.094626, 148.802941 -33.094626, 148.802941 -33.09238, 148.800695 -33.09238, 148.800695 -33.074414, 148.798449 -33.074414, 148.798449 -33.072168, 148.796204 -33.072168, 148.796204 -33.081151, 148.798449 -33.081151, 148.798449 -33.085643, 148.796204 -33.085643)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068215-240626123714530/datasets/export for details.
DOI: 10.15468/dl.kka8vq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.646355 -33.081151, 147.646355 -33.085643, 147.655338 -33.085643, 147.655338 -33.081151, 147.646355 -33.081151))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068216-240626123714530/datasets/export for details.
DOI: 10.15468/dl.7qvhjz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.751907 -33.081151, 147.751907 -33.085643, 147.754153 -33.085643, 147.754153 -33.081151, 147.751907 -33.081151))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068217-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ye8rxv
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron complexum Balf.fil. & W.W.Sm."
 ]
}

 The dataset includes 54 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068218-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26622130.v1
title: Additional file 6 of Gastric cancer-derived LBP promotes liver metastasis by driving intrahepatic fibrotic pre-metastatic niche formation

description: Additional file 6.
DOI: 10.15468/dl.94q4yh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.661456 -33.087889, 148.665947 -33.087889, 148.665947 -33.081151, 148.661456 -33.081151, 148.661456 -33.087889)), ((148.661456 -33.087889, 148.65921 -33.087889, 148.65921 -33.090134, 148.661456 -33.090134, 148.661456 -33.087889)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068220-240626123714530/datasets/export for details.
DOI: 10.15468/dl.4fmskd
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium UPNA-Comunidad de Bardenas Reales, permanent plots"
 ]
}

 The dataset includes 237 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068221-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24240087.v1
title: Additional file 1 of Histone regulator KAT2A acts as a potential biomarker related to tumor microenvironment and prognosis of diffuse large B cell lymphoma

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24240087
title: Additional file 1 of Histone regulator KAT2A acts as a potential biomarker related to tumor microenvironment and prognosis of diffuse large B cell lymphoma

description: Supplementary Material 1
DOI: 10.15468/dl.ecwtue
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (5a45153b-bdf9-44ae-b7a7-e3261896540b, 0e2f2e28-7790-4c82-b8fb-6ef7b4c764e2)",
 "TaxonKey is Dendrobates truncatus (Cope, 1861)"
 ]
}

 The dataset includes 125 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068222-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24240149
title: Additional file 1 of Identification of methylation-regulated genes modulating microglial phagocytosis in hyperhomocysteinemia-exacerbated Alzheimer’s disease

description: Additional file 1: Supplemental Figure S1. Functional-validated human/mouse Aβ phagocytic AD MG DEGs with opposing changes in gene expression in human/mouse AD MG and mouse Aβ+ MG (14 genes). A total of 14 functional-validated human Aβ phagocytic AD MG DEGs were identified by overlapping functional-validated human AD MG DEG with mouse Aβ+ MG screening dataset, displaying opposite changes in gene expression. Abbreviation: Aβ, amyloid beta; AD, Alzheimer’s disease; DEG, differentially expressed gene; FC, fold change; MG, microglia. Supplemental Figure S2. Identification of GWAS-mapped phagocytic AD MG DEGs altered by HHcy. (A) Identification of 431 GWAS-mapped AD genes. A summary diagram was created to establish a set of AD genes mapped by GWAS using a PubMed search. (B) GWAS-mapped AD MG DEGs (43). We identified 43 GWAS-mapped AD MG DEGs by overlapping 431 GWAS-mapped AD genes with 409 human and 777 mouse AD MG genes. Among the 43 genes, 4 were common to both species. We plotted the expression changes of these genes in AD MG using a histogram, where the dark red bars indicate genes that were identified in both human (C) and mouse (D) AD MG. (E) Network and neuro-immunological AD biological process. We used the 43 identified GWAS-mapped AD MG genes to perform Gene Ontology (GO) analysis and identify the top 15 neuro-immunological biological processes and molecular networks. (F) GWAS-mapped phagocytic AD MG DEGs altered by HHcy. GWAS-mapped phagocytic AD MG genes altered by HHcy were identified by overlapping 431 human GWAS-mapped AD genes with 326 phagocytic AD MG genes and 353 Cbs-/- MG genes. The functions and cellular locations of these genes are described in a table. Abbreviation: Aβ, amyloid beta; AD, Alzheimer’s disease; CI, confidence interval; DEG, differentially expressed gene; ER, endoplasmic reticulum; FC, fold change; FDR, false discovery rate; GO, gene ontology analysis; GWAS, Genome-wide association studies; HHcy, hyperhomocysteinemia; MG, microglia; PM, plasma membrane; TGN, trans-Golgi-network.
DOI: 10.6084/m9.figshare.24240149.v1
title: Additional file 1 of Identification of methylation-regulated genes modulating microglial phagocytosis in hyperhomocysteinemia-exacerbated Alzheimer’s disease

description: Additional file 1: Supplemental Figure S1. Functional-validated human/mouse Aβ phagocytic AD MG DEGs with opposing changes in gene expression in human/mouse AD MG and mouse Aβ+ MG (14 genes). A total of 14 functional-validated human Aβ phagocytic AD MG DEGs were identified by overlapping functional-validated human AD MG DEG with mouse Aβ+ MG screening dataset, displaying opposite changes in gene expression. Abbreviation: Aβ, amyloid beta; AD, Alzheimer’s disease; DEG, differentially expressed gene; FC, fold change; MG, microglia. Supplemental Figure S2. Identification of GWAS-mapped phagocytic AD MG DEGs altered by HHcy. (A) Identification of 431 GWAS-mapped AD genes. A summary diagram was created to establish a set of AD genes mapped by GWAS using a PubMed search. (B) GWAS-mapped AD MG DEGs (43). We identified 43 GWAS-mapped AD MG DEGs by overlapping 431 GWAS-mapped AD genes with 409 human and 777 mouse AD MG genes. Among the 43 genes, 4 were common to both species. We plotted the expression changes of these genes in AD MG using a histogram, where the dark red bars indicate genes that were identified in both human (C) and mouse (D) AD MG. (E) Network and neuro-immunological AD biological process. We used the 43 identified GWAS-mapped AD MG genes to perform Gene Ontology (GO) analysis and identify the top 15 neuro-immunological biological processes and molecular networks. (F) GWAS-mapped phagocytic AD MG DEGs altered by HHcy. GWAS-mapped phagocytic AD MG genes altered by HHcy were identified by overlapping 431 human GWAS-mapped AD genes with 326 phagocytic AD MG genes and 353 Cbs-/- MG genes. The functions and cellular locations of these genes are described in a table. Abbreviation: Aβ, amyloid beta; AD, Alzheimer’s disease; CI, confidence interval; DEG, differentially expressed gene; ER, endoplasmic reticulum; FC, fold change; FDR, false discovery rate; GO, gene ontology analysis; GWAS, Genome-wide association studies; HHcy, hyperhomocysteinemia; MG, microglia; PM, plasma membrane; TGN, trans-Golgi-network.
DOI: 10.6084/m9.figshare.24240086.v2
title: Additional file 1 of Dig up tall fescue plastid genomes for the identification of morphotype-specific DNA variants

description: Additional file 1: Tables S1-S13
DOI: 10.6084/m9.figshare.26622274.v1
title: Additional file 8 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 8 TPM data used for NMF, clustering, and other analyses of this manuscript.
DOI: 10.6084/m9.figshare.26578958.v1
title: Additional file 4 of Klebsiella quasipneumoniae in intestine damages bile acid metabolism in hematopoietic stem cell transplantation patients with bloodstream infection

description: Additional file 4. Table S3. The differential metabolites of human serum.
DOI: 10.6084/m9.figshare.26578964.v1
title: Additional file 6 of Klebsiella quasipneumoniae in intestine damages bile acid metabolism in hematopoietic stem cell transplantation patients with bloodstream infection

description: Additional file 6. Table S5. The list of all primers for PCR.
DOI: 10.15468/dl.nap7qt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.681668 -33.081151, 148.681668 -33.085643, 148.683914 -33.085643, 148.683914 -33.081151, 148.681668 -33.081151))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068223-240626123714530/datasets/export for details.
DOI: 10.15468/dl.pkbwa5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.776611 -33.085643, 147.776611 -33.090134, 147.778857 -33.090134, 147.778857 -33.087889, 147.790086 -33.087889, 147.790086 -33.085643, 147.776611 -33.085643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068224-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26622268.v1
title: Additional file 6 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 6 Table S5 An file containing DE genes and enriched functions and pathways, and the metabolic signature genes for each pathway used for Figs. 5 and Additional file 1: Fig. S6.
DOI: 10.15468/dl.4d3cpn
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Projet de carrière de matériaux alluvionnaires - Les Orangers - Commune de Saint-Benoît - Flore"
 ]
}

 The dataset includes 450 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068225-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26722840
title: <i>Natural water pollution by heavy metals</i>

description: This study investigates heavy metal pollution in the Styr River, focusing on assessing pollution levels before and after water discharge from the Rivne Nuclear Power Plant (NPP). Consequently, within the context of this study, the aim is to calculate and compare heavy metal pollution indices for the Styr River at locations upstream and downstream of the Rivne Nuclear Power Plant's water discharge (Fig. 1). The general data acquisition specifications are shown in Table 1. The research leverages three heavy metal pollution indices (HPI, HEI, and DC) to evaluate the extent of contamination, offering a nuanced understanding of pollution dynamics within the river system. Previous studies have highlighted the persistent nature of heavy metals in aquatic environments, which pose significant risks to both human health and ecological systems. Industrial activities, particularly from nuclear power plants, can contribute to water pollution through the discharge of treated water, which may contain harmful substances.
DOI: 10.6084/m9.figshare.24240086
title: Additional file 1 of Dig up tall fescue plastid genomes for the identification of morphotype-specific DNA variants

description: Additional file 1: Tables S1-S13
DOI: 10.6084/m9.figshare.26622313
title: Additional file 1 of Fungal community inside lichen: a curious case of sparse diversity and high modularity

description: Additional file 1. Fig. S1 Community similarity ordination based on geographical distance. The ordinations are visualized in two approaches: a non-metric multidimensional scaling and b principal co-ordinates analysis based on Brat-Curtis distance. Ellipses indicate the 95% confidence interval of group variance. c PCoA plots showing ELF community variability between the two host lichens from same site. Fig. S2 Centrality indices of the fungal communities. a Betweenness and Closeness indicate vectors containing the betweenness and closeness of each node. b InDegree and OutDegree indicate vectors containing the inward and outward degree of each node. c Expected influences indicates the sums of incoming or outgoing edge weights connected to a node. Mean ± SEM, ****p &lt; 0.001, **p &lt; 0.01, ns not significant.
DOI: 10.6084/m9.figshare.26622256
title: Additional file 2 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 2 Table S1, An file containing sample metadata and expression data used for Figs. 1, Additional file 1: Fig. S1, and S2.
DOI: 10.6084/m9.figshare.26622256.v1
title: Additional file 2 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 2 Table S1, An file containing sample metadata and expression data used for Figs. 1, Additional file 1: Fig. S1, and S2.
DOI: 10.6084/m9.figshare.26622259
title: Additional file 3 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 3 Table S2, An file containing PAM50 genes, PAM50 classification, cross-species PAM50 analysis data, and ML-identified feature genes used for Figs. 2 and Additional file 1: Fig. S3.
DOI: 10.6084/m9.figshare.26622259.v1
title: Additional file 3 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 3 Table S2, An file containing PAM50 genes, PAM50 classification, cross-species PAM50 analysis data, and ML-identified feature genes used for Figs. 2 and Additional file 1: Fig. S3.
DOI: 10.6084/m9.figshare.26622268
title: Additional file 6 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 6 Table S5 An file containing DE genes and enriched functions and pathways, and the metabolic signature genes for each pathway used for Figs. 5 and Additional file 1: Fig. S6.
DOI: 10.6084/m9.figshare.26578913
title: Additional file 6 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26578907
title: Additional file 4 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26622262
title: Additional file 4 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 4 Table S3, An file containing DE genes, enriched functions, and ssGSEA scores used for Figs. 3 and Additional file 1: Fig. S4.
DOI: 10.6084/m9.figshare.26622262.v1
title: Additional file 4 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 4 Table S3, An file containing DE genes, enriched functions, and ssGSEA scores used for Figs. 3 and Additional file 1: Fig. S4.
DOI: 10.6084/m9.figshare.26622265
title: Additional file 5 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 5 Table S4An file containing ESR1 and PGR expression data of human and canine tumors used for Figs. 4 and Additional file 1: Fig. S5.
DOI: 10.6084/m9.figshare.26622265.v1
title: Additional file 5 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 5 Table S4An file containing ESR1 and PGR expression data of human and canine tumors used for Figs. 4 and Additional file 1: Fig. S5.
DOI: 10.6084/m9.figshare.26622271
title: Additional file 7 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 7 Table S6An file containing ESR1/PGR/PRLR-correlated genes used for Figs. 7 and Additional file 1: Fig. S8.
DOI: 10.6084/m9.figshare.26622274
title: Additional file 8 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 8 TPM data used for NMF, clustering, and other analyses of this manuscript.
DOI: 10.6084/m9.figshare.26578904.v1
title: Additional file 3 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26622271.v1
title: Additional file 7 of Human basal-like breast cancer is represented by one of the two mammary tumor subtypes in dogs

description: Additional file 7 Table S6An file containing ESR1/PGR/PRLR-correlated genes used for Figs. 7 and Additional file 1: Fig. S8.