cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ct70q
title: Data from: Using Drosophila melanogaster to identify chemotherapy toxicity genes

description: The severity of the toxic side effects of chemotherapy shows a great deal
 of interindividual variability, and much of this variation is likely
 genetically based. Simple DNA tests predictive of toxic side effects could
 revolutionize the way chemotherapy is carried out. Due to the challenges
 in identifying polymorphisms that affect toxicity in humans, we use
 Drosophila fecundity following oral exposure to carboplatin, gemcitabine
 and mitomycin C as a model system to identify naturally occurring DNA
 variants predictive of toxicity. We use the Drosophila Synthetic
 Population Resource (DSPR), a panel of recombinant inbred lines derived
 from a multiparent advanced intercross, to map quantitative trait loci
 affecting chemotoxicity. We identify two QTL each for carboplatin and
 gemcitabine toxicity and none for mitomycin. One QTL is associated with
 fly orthologs of a priori human carboplatin candidate genes ABCC2 and
 MSH2, and a second QTL is associated with fly orthologs of human
 gemcitabine candidate genes RRM2 and RRM2B. The third, a carboplatin QTL,
 is associated with a posteriori human orthologs from solute carrier family
 7A, INPP4A&B, and NALCN. The fourth, a gemcitabine QTL that also
 affects methotrexate toxicity, is associated with human ortholog GPx4.
 Mapped QTL each explain a significant fraction of variation in toxicity,
 yet individual SNPs and transposable elements in the candidate gene
 regions fail to singly explain QTL peaks. Furthermore, estimates of
 founder haplotype effects are consistent with genes harboring several
 segregating functional alleles. We find little evidence for nonsynonymous
 SNPs explaining mapped QTL; thus it seems likely that standing variation
 in toxicity is due to regulatory alleles.
description: Chemotoxicity
 phenotypesThe file contains
 fecundity measurements for females dosed with carboplatin, gemcitabine,
 methotrexate, or mitomycin C using the DSPR panel of recombinant inbred
 lines and an ABcross design (see http://FlyRILs.org for details about the
 DSPR and the cross design). There are 3 replicate measures for each cross.
 See readme file for column names.ChemoDrugs.txt
DOI: 10.5061/dryad.n0g90
title: Data from: A breath of fresh air in the foraging theory: the importance of wind for food size selection in a central place forager

description: Empirical data about food size carried by central place foragers does not
 often fit with the optimum predicted by classical foraging theory.
 Traditionally, biotic constraints such as predation risk and competition
 have been proposed to explain this inconsistency, leaving aside the
 possible role of abiotic factors. Here we documented how wind affects the
 load size of a central-place forager (leaf-cutting ants) through a
 mathematical model including the whole foraging process. The model showed
 that as wind speed at ground level increased from 0 to 2 km/h, load size
 decreased from 91 to 30 mm2, a prediction that agreed with empirical data
 from windy zones, highlighting the relevance of considering abiotic
 factors to predict foraging behavior. Furthermore, wind reduced the range
 of load sizes that workers should select to maintain a similar rate of
 food intake and decreased the foraging rate by ~70% when wind speed
 increased 1 km/h. These results suggest that wind could negatively reduce
 the fitness of colonies and limit the geographic distribution of
 leaf-cutting ants. The developed model offers a complementary explanation
 why load size in central place foragers may not fit theoretical
 predictions and could serve as basis to study the effects of other abiotic
 factors that influence foraging.
description: Data of
 samplingsData of samplings to
 evaluate the effect of wind in number of active workers and loaded and
 unloaded ants speed, and to measure load area carried by workers in
 natural conditions.data.xlsx
DOI: 10.5061/dryad.1v3c2
title: Data from: Niche conservatism and the invasive potential of the wild boar

description: 1.Niche conservatism, i.e. the retention of a species’ fundamental niche
 through evolutionary time, is cornerstone for biological invasion
 assessments. The fact that species tend to maintain their original climate
 niche allows predictive maps of invasion risk to anticipate potential
 invadable areas. Unraveling the mechanisms driving niche shifts can shed
 light on the management of invasive species. 2.Here, we assessed niche
 shifts in one of the world's worst invasive species: the wild boar
 Sus scrofa. We also predicted potential invadable areas based on an
 ensemble of three ecological niche modeling methods, and evaluated the
 performance of models calibrated with native vs pooled (native plus
 invaded) species records. By disentangling the drivers of change on the
 exotic wild boar population's niches, we found strong evidence for
 niche conservatism during biological invasion. 3.Ecological niche models
 calibrated with both native and pooled range records predicted convergent
 areas. Also, observed niche shifts are mostly explained by niche
 unfilling, i.e. there are unoccupied areas in the exotic range where
 climate is analogous to the native range. 4.Niche unfilling is expected as
 result of recent colonization and ongoing dispersal, and was potentially
 stronger for the Neotropics, where a recent wave of introductions for
 pig-farming and game-hunting has led to high wild boar population growth
 rates. The invasive potential of wild boar in the Neotropics is probably
 higher than in other regions, which has profound management implications
 if we are to prevent their invasion into species-rich areas, such as
 Amazonia, coupled with expansion of African swine fever and possibly great
 economic losses. 5.Although the originally Eurasian-wide distribution
 suggests a pre-adaptation to a wide array of climates, the wild boar
 worldwide invasion does not exhibit evidence of niche evolution. The
 invasive potential of the wild boar therefore probably lies on the
 reproductive, dietary and morphological characteristics of this species,
 coupled with behavioral thermoregulation.
description: Appendix S1 - Full
 occurrence datasetFull occurrence dataset,
 plus their biogeographical origin, used in the modeling procedures of this
 work.JAEsalesSA1.csv
DOI: 10.5061/dryad.591d4
title: Data from: Parasite infection and decreased thermal tolerance: impact of proliferative kidney disease (PKD) on a wild salmonid fish in the context of climate change

description: Parasites and pathogens can have an important effect on their host's
 thermal resistance. The impact of parasite infection on host physiological
 performances has traditionally been studied in controlled laboratory
 conditions, and much less is known about its actual effects in wild
 populations. Nonetheless, such knowledge is critical when assessing the
 effect of climate change on the future survival of the host.
 Tetracapsuloides bryosalmonae is a myxozoan endoparasite causing
 proliferative kidney disease (PKD) in salmonids. Infection and clinical
 symptoms of PKD are dependent on environmental temperature and PKD has
 become an emerging disease of primary importance for farmed and wild
 salmonids in the last decades. Despite important achievements in
 understanding PKD pathology in recent years, there are still crucial gaps
 in the knowledge of the disease ecology, notably in how the parasite
 affects host performance in the wild. We sampled juvenile (0+) brown trout
 (Salmo trutta) from the wild during early and late summer and assessed
 relative parasite load (DNA quantification with qPCR) and disease severity
 (kidney hyperplasia). We also measured haematocrit, leucocyte formula,
 aerobic scope and upper thermal tolerance in a field-physiology approach
 in order to better understand the relationships between PKD severity and
 host performance. By using wild-caught individuals and performing
 measurements directly on location, we aimed to gain insights into host
 physiology in a natural environment while avoiding biases caused by
 laboratory acclimation. We found that most physiopathological symptoms in
 the wild were strongly correlated with kidney hyperplasia, but more weakly
 linked to parasite load. Disease severity was positively correlated with
 anaemia and abundance of circulating thrombocytes, and negatively
 correlated with aerobic scope and thermal tolerance. Our results suggest
 that impaired aerobic performances and thermal tolerance in infected fish
 may potentially result in decreased host survival in the wild, especially
 in relation with predicted higher average summer temperatures and
 increased frequency of extreme events (summer heatwaves) in the context of
 global climate change.
description: Complete dataset for
 Bruneaux 2016This file is a
 tab-delimited text file containing all the relevant data needed to
 reproduce the analyses presented in Bruneaux 2016. The first line is a
 header containing column names. Each row corresponds to one fish
 individual. Each column corresponds to one variable, with data collected
 either during field work or during post-processing of the samples in the
 lab (see the ReadMe file for details about the
 variables).dataset-dryad-bruneaux-2016-FE.tsv
DOI: 10.5061/dryad.j75g369
title: Data from: Response of bluebunch wheatgrass to invasion: differences in competitive ability among invader-experienced and naïve populations

description: 1. Invasive species may alter selective pressures on native plant
 populations, and there is some evidence that competition with invasive
 plants may lead to differences in competitive ability between populations
 that have experienced invasion and those that have not. Previous results
 have varied among species but also among populations of the same species.
 2. We conducted a greenhouse experiment to determine whether there was
 variation in traits, or in ability to tolerate or suppress an invasive
 species, among populations of a common native grass that had different
 histories of exposure to competition from an invasive species.
 Specifically, we grew seeds of a native grass (Pseudoroegneria spicata)
 collected from 14 wild populations (six from invaded populations and eight
 from uninvaded populations) and a cultivar (Anatone) alone or in
 competition with the invasive species (Centaurea stoebe) and measured
 traits of both species during and at the end of a 100-day growing period.
 3. Pseudoroegneria spicata seedlings from invader-experienced populations
 had more leaves than invader-naïve populations, and juvenile plants from
 experienced populations were less affected by competition with C. stoebe
 than were plants from naïve populations. 4. There were significant
 differences in traits among populations at the seedling and juvenile life
 stages, and at both life stages, variation among populations was greater
 than variation among experience types. 5. The most predictive traits of P.
 spicata tolerance to competition were number of leaves (seedling and
 juvenile stage), and total and root biomass (juvenile only). No traits
 significantly predicted suppression of C. stoebe. 6. There was not a
 significant relationship between a population’s suppression of C. stoebe
 and its tolerance of competition. 7. Our results suggest that in P.
 spicata, invasion selects for larger plants and traits that can influence
 tolerance of competition. If land managers are interested in identifying
 highly competitive seed sources for revegetation in invaded areas, both
 population and invader-experience type should be considered. Since
 tolerance and suppression do not appear to be related in P. spicata, seed
 source selection should be driven by the element of competitive ability
 (either tolerance or suppression) that is most important to project goals.
description: Invasion response
 dataData used to determine
 population, invasion experience, and treatment differences in traits and
 relative interaction index (RII), as well as relationship between
 suppression and tolerance, for bluebunch wheatgrass populations around the
 Missoula valley, MT, USA.Gibson_invasion_response_data.xlsx
DOI: 10.15468/dl.2gvjvs
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.1.6_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyanopica cyanus"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001092-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fg271
title: Data from: Genotype-specific interactions between parasitic arthropods

description: Despite the ubiquity of coinfection, we know little of the effects of
 intra-specific genetic variability on coinfection by distinct parasite
 species. Here we test the hypothesis that parasite multiplication depends
 on the combination of parasite genotypes that coinfect the host (that is
 Genotype.parasite × Genotype.parasite interaction). To that aim, we
 infected tomato leaves with the ecto-parasitic mites Tetranychus urticae
 and Tetranychus evansi. We tested all possible combinations between four
 T. urticae and two T. evansi populations sampled on different hosts or
 localities. There was no universal (that is genotype-independent) effect
 of coinfection on mite multiplication; in many cases the two species had
 no effect on each other. However, several combinations of T. evansi and T.
 urticae populations led to elevated T. evansi numbers. Similarly, T.
 urticae reproduction largely depended on the interaction between T.
 urticae and T. evansi populations. This evidence for genotype-by-genotype
 interaction between coinfecting parasites indicates that the effect of
 coinfection on parasite epidemiology and evolution may vary in space
 according to the genetic composition of local parasite populations; it
 further suggests the possibility of coevolution between parasites species
 that share the same hosts.
description: data.orsucci.etal.2016.heredityThis is the dataset for Orsucci, Navajas and Fellous. Genotype-specific interactions between parasitic arthropods. Column names describe explicitly the nature of the data they contain.
DOI: 10.5061/dryad.17s6621t
title: Data from: Genetic characterization of the endangered and endemic anchialine squat lobster Munidopsis polymorpha from Lanzarote (Canary Islands): management implications

description: Anchialine species show restricted geographic ranges, high habitat
 specificity and small population sizes. These factors make them
 particularly vulnerable to human activities, yet little is known about
 their ecology and evolutionary history. Munidopsis polymorpha is a decapod
 endemic to an anchialine cave system of the Corona lava tube in Lanzarote
 (Canary Islands). The present study, the first genetic survey conducted on
 this largely unknown species, was designed to characterize its genetic
 diversity, population structure and recent demographic history using
 sequence data for the COI gene and eight microsatellite. A single
 haplotype was identified in the mitochondrial dataset. Nuclear genetic
 diversity was also low (average= 4.375 ± 1.685). No significant genetic
 structure was detected between sampling sites and years, either by AMOVA
 (FST = 0.006, P= 0.110) or Bayesian clustering analysis (K = 1),
 indicating this species should be treated as a single management unit.
 Neither did we find evidence for a recent bottleneck event, and estimates
 of effective population size were extremely low (∼ 50). The lack of
 population structure, low genetic diversity and extremely low effective
 population size reinforces the high degree of isolation and endemicity of
 this species and consequently the need to implement appropriate management
 actions.
description: Data_Munidopsis_DRYADMicrosatellite data for the species Munidopsis polymorpha. All specimens were collected in Lanzarote (Canary Islands) between 2005-2009. Mp-1, Mp-2, Mp-3, Mp-4, Mp-5, M0-6, Mp-7 and Mp-8 are the names of the 8 microsatellites isolated for the species.
DOI: 10.5061/dryad.q0464
title: Data from: The advertisement call of the toad Rhinella humboldti (Bufonidae)

description: Despite important advances in understanding phylogenetic relationships
 among anurans (Frost et al. 2006; Pyron & Wiens, 2011), many
 uncertainties persist regarding phylogenetic affinities and taxonomic
 limits. The male advertisement call offers numerous opportunities to find
 diagnostic characters and is therefore useful for anuran species
 delimitation (Gerhardt & Huber, 2002; Grant et al. 2006). Thirteen
 species are recognized within the Rhinella granulosa group (Narvaes
 & Rodrigues, 2009; Sanabria et al. 2010) although it is possible
 that R. dorbignyi and R. fernandezae being conspecifics (Guerra et al.
 2011, page 36). The advertisement call has been described for nine species
 of the granulosa group: Rhinella granulosa, R. bergi, R. major, R. azarai,
 R. fernandezae, R. dorbignyi, R. merianae, R. centralis and R. pygmaea
 (Köhler et al. 1997; Guerra et al. 2011; São-Pedro et al. 2011; Ribeiro de
 Carvalho et al. 2013). Some information regarding call features are
 available for R. humboldti from populations of Guyana (Lescure &
 Marty, 2000); however, there are no associated data of male body size,
 sample size, and call traits such as pulse number per notes, note
 duration, etc. Here we provide a formal description of the advertisement
 call of R. humboldti using call recordings obtained in a population in
 Colombia, South America.
description: Summary of advertisement
 call features for toads of Rhinella humboldti recorded at municipality of
 Orocue, Meta, Colombia.Data are mean values ±
 standard deviation and range where pertinent. Male body size corresponds
 to snout-vent length.Table_ The advertisement call
 of the toad Rhinella humboldti
 (Bufonidae).doc
DOI: 10.5061/dryad.mb1t9
title: Data from: Early postembryonic to mature ontogeny of the oryctocephalid trilobite Duodingia duodingensis from the lower Cambrian (Series 2) of southern China

description: Many well-preserved, articulated exoskeletons recovered from the early
 Cambrian (Stage 3) Mingxinsi Formation in Weng'an, Guizhou Province,
 southern China, permit reconstruction of the early postembryonic to mature
 (i.e. protaspid to holaspid) ontogeny of the small oryctocephalid
 trilobite Duodingia duodingensis Chow. It is likely that the type material
 is a latest stage meraspis, and the species had nine thoracic segments in
 the holaspid phase rather than the eight suggested previously. The
 earliest holaspis is relatively small in size (about 3.00 mm in total
 length), and the succeeding instars show little size-related shape change.
 Striking changes take place in the morphology of the glabella during early
 ontogeny including forward extension of the axial furrows until they reach
 the anterior cephalic margin in meraspid degree 0iii, and narrowing of the
 glabellar mid-region. This is the first noneodiscid trilobite to show
 three developmental stages within meraspid degree 0. Documentation of
 ontogenetic changes demonstrates that both Duodingia hubeiensis and D.
 taihuensis are junior synonyms of D. duodingensis because they bear
 characters of particular ontogenetic stages of their senior synonym. The
 per-moult growth increment in D. duodingensis was apparently small in this
 small trilobite. The development of trunk segmentation during the meraspid
 phase is apparently more complex than in many other trilobites and could
 include multiple moults within individual meraspid degrees, intraspecific
 polymorphism in the pattern of segment release, or phenotypic variation
 among the population in the degree of segment expression. Fluctuations
 between accumulative moults, in which segments are added to the meraspid
 pygidium, and depletive moults, in which segments are released into the
 thorax, if confirmed, would suggest tight coordination between these
 different aspects of trunk segment development.
description: Morphometric data of
 trilobite Duodingia duodingensisThis dataset belongs to
 the paper intitled 'Early postembryonic to mature ontogeny of the
 cheiruroideid trilobite Duodingia duodingensis from the lower Cambrian
 (Series 2) of southern China'. It has been included in the
 desciptions of ontogeny of the trilobite Duodingia duodingensis. Bivariate
 scatter diagrams of cranidia in Figure 6 is also based on those
 morphometric data.
DOI: 10.5061/dryad.8949
title: Data from: A refined modelling approach to assess the influence of sampling on palaeobiodiversity curves: new support for declining Cretaceous dinosaur richness

description: Modelling has been underdeveloped with respect to constructing
 palaeobiodiversity curves, but it offers an additional tool for removing
 sampling from their estimation. Here an alternative to subsampling
 approaches, which often require large sample sizes, is explored by the
 extension and refinement of a pre-existing modelling technique that uses a
 geological proxy for sampling. Application of the model to the three main
 clades of dinosaurs suggests that much of their diversity fluctuations
 cannot be explained by sampling alone. Furthermore, there is new support
 for a long-term decline in their diversity leading up to the K/Pg
 extinction event. At present use of this method with data that includes
 either lagerstätten or ‘Pull of the Recent’ biases is inappropriate,
 although partial solutions are offered.
description: R function(s) and
 dataR
 functions and data to perform all analyses from paperDryad_data.xls
DOI: 10.5061/dryad.3rq87
title: Data from: Pleiotropic effects of juvenile hormone in ant queens and the escape from the reproduction-immunocompetence trade-off

description: The ubiquitous trade-off between survival and costly reproduction is one
 of the most fundamental constraints governing life-history evolution. In
 numerous animals, gonadotropic hormones antagonistically suppressing
 immunocompetence cause this trade-off. The queens of many social insects
 defy the reproduction-survival trade-off, achieving both an
 extraordinarily long life and high reproductive output, but how they
 achieve this is unknown. Here we show experimentally, by integrating
 quantification of gene expression, physiology and behaviour, that the
 long-lived queens of the ant Lasius niger have escaped the
 reproduction-immunocompetence trade-off by decoupling the effects of a key
 endocrine regulator of fertility and immunocompetence in solitary insects,
 juvenile hormone (JH). This modification of the regulatory architecture
 enables queens to sustain a high reproductive output without elevated JH
 titres and suppressed immunocompetence, providing an escape from the
 reproduction-immunocompetence trade-off that may contribute to the
 extraordinary lifespan of many social insect queens.
description: 2015_Pamminger_ProcB_dataS2_data_set_2015_Pamminger_ProcB_data.ods