cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r4n35/5
title: Transporterless cells without sensors in 0% or 2% glucose

description: Transporterless cells without sensors were grown in 0% (Fields of view 1 to 20) or 2% (Fields of view 61 to 80) glucose. Corresponds to figures 1H (2%) and 1I (0%) Images were taken every 10 minutes.
DOI: 10.5061/dryad.r4n35/7
title: single-HXT2 with sensors in 0.1% glucose, 125ng/ml  DOX

description: single-HXT2 with sensors were grown in 0.1% glucose, with 125ng/ml  DOX. Fields of view 41 to 60.
DOI: 10.5061/dryad.r4n35/8
title: single-HXT2 with sensors in 0.1% glucose, 250ng/ml  DOX

description: single-HXT2 with sensors were grown in 0.1% glucose, with 250ng/ml  DOX. Fields of view 41 to 60.
DOI: 10.5061/dryad.r4n35/9
title: single-HXT2 with sensors in 0.1% glucose, 1250ng/ml  DOX

description: single-HXT2 with sensors were grown in 0.1% glucose, with 1250ng/ml  DOX. Field of view 41 to 60.
DOI: 10.5061/dryad.vh6pd/5
title: STRUCTURE input files

description: This file contains all eight input files used for the STRUCTURE analyses on the georeferenced Anthyllis vulneraria populations. This file contains microsatellite (SSR) data. This file can be converted to other formats using the program GenAlEx.
DOI: 10.5061/dryad.vh6pd/6
title: R script DAPC analysis

description: This file contains the R script used for the DAPC assignment analyses to assign Anthyllis vulneraria individuals of recent populations to those of sampled old populations using the adegenet R package.
DOI: 10.5061/dryad.vh6pd/7
title: R DAPC input file (Anthyllis_new)

description: This file corresponds to the 'Anthyllis_new.GEN' dataset mentioned in the 'R script DAPC analysis' document.
DOI: 10.5061/dryad.vh6pd/8
title: R DAPC input file (Anthyllis_old)

description: This file corresponds to the 'Anthyllis_old.GEN' dataset mentioned in the 'R script DAPC analysis' document.
DOI: 10.5061/dryad.03c0c/1
title: positive versus negative studies india
DOI: 10.5061/dryad.11r07/1
title: Vale-et-al-PRSB-CRISPR-Cost-Data

description: Data on growth rate, lag time, yield and competitive fitness of several strains of Streptococcus thermophilus. Data is provided for individual replicates, and organised separately for each set of figures.See methods section for experimental details.
DOI: 10.5061/dryad.46170/1
title: Brown_et_al_Appendix_1

description: Contains general sample information, mtDNA haplotype data, Y chromosome haplotypes and microsatellite  data for Arctic dogs and wolves.
DOI: 10.5061/dryad.461g6/4
title: Likelihood analysis spreadsheet

description: Spreadsheet taking output of test.sh and calculating AIC, BIC scores, ranking models, and formatting results for inclusion in the paper.
DOI: 10.5061/dryad.461g6/5
title: Runable Java jar file for likelihood analysis

description: See ReadMe.txt for details. Requires library jar file (https://github.com/MichaelWoodhams/pal-mdw/releases) to run.
DOI: 10.5061/dryad.461g6/6
title: Read Me file
DOI: 10.5061/dryad.461g6/8
title: Supplementary tables and figures

description: Supplementary tables and figures in support of the main paper. Includes information repackaged from likelihoods.ods and LieMarkov.nb.
DOI: 10.5061/dryad.66k59/1
title: Frog Mortality Project dataset 1992-2000 (Froglife)

description: This CSV data file contains amphibian mortality reports submitted by members of the public between 1992-2000 to the Frog Mortality Project, administered by Froglife. Those wishing to use this data should acknowledge Froglife (Charity number 1093372). For more details please see the Read Me file. For any further queries with regards to this data or to request more recent data, please contact Froglife info@froglife.org.
DOI: 10.5061/dryad.73fq4/1
title: raw_data

description: Experiment 1-6 raw & grip force data (MATLAB .mat files)
DOI: 10.5061/dryad.8hm4p/10
title: Sitta_Data

description: Characteristics of sky islands, including area of forest cover, distance to the niche centroid, distance to Mogollon Rim and Sierra Madre Occidental, and distance to nearest mainland.
DOI: 10.5061/dryad.8hm4p/11
title: Pairwise comparisons

description: Pairwise comparisons of geographic (distance.km) and environmental (distance.e) distances between populations and genetic differentiation (FST) between populations. Genetic differentiation is based on STACKS output using eight different settings. m1, m5, m10, and m15 indicate stats when changing the minimum read depth for loci to be included in the dataset with a minimum of two individuals per population. limited and 90% indicate when more restrictive sampling is necessary for SNPs to be included (as described in the manuscript). select and no_select indicate genetic differentiation when only loci under selection are included or loci under selection are excluded, respectively.
DOI: 10.5061/dryad.8hm4p/12
title: STACKS_output

description: STACKS output. Included are the catalog.tags file, a population map, a whitelist of loci used in the main analyses, and output of the populations module for eight settings (as described in pairwise comparisons data upload). Each directory includes an FST summary, summary statistics per locus and overall, and all SNP data (in STRUCTURE format).
DOI: 10.5061/dryad.8hm4p/6
title: BEDASSLE files

description: Input and output BEDASSLE files. Genetic data for each population are in the allele.counts and sample.sizes files. Environmental data matrices are located in the .csv files. Output is in R object files. Included are two replicates of output using the PCA-based environmental data (Sitta1_BB_MCMC and Sitta2_BB_MCMC files) and two replicates using temperature and precipitation data as environmental data (Sitta_66_2var files).
DOI: 10.5061/dryad.8hm4p/7
title: FASTA_BLAST

description: FASTA file of consensus sequences containing all SNPs used in the study and BLAST+ results of these loci.
DOI: 10.5061/dryad.8hm4p/8
title: LFMM files

description: Input used in LFMM analyses including genetic (sitta.lfmm) and environmental (sitta.lfmm.env) data for each individual.
DOI: 10.5061/dryad.8hm4p/9
title: Model_Points

description: Training and testing points used for ecological niche modeling.
DOI: 10.5061/dryad.968k6/1
title: Gorospe_Karl_data

description: This file contains location information, depth, hothour, and hotspot temperature data for all corals in the study. The temperatures were taken at 85 locations across a single reef and interpolated temperatures were assigned to each colony
DOI: 10.5061/dryad.968k6/2
title: Gorospe_Karl_logger_data

description: This file contains the actual reading of temperature at the 85 locations across a single reef. They were used to assign interpolated values to each coral colony on the reef.
DOI: 10.5061/dryad.b0551.1
title: Data from: Early Pennsylvanian (Langsettian) fish assemblages from the Joggins Formation, Canada, and their implications for palaeoecology and palaeogeography
DOI: 10.5061/dryad.b0551.2
title: Data from: Early Pennsylvanian (Langsettian) fish assemblages from the Joggins Formation, Canada, and their implications for palaeoecology and palaeogeography
DOI: 10.5061/dryad.b0551.2/1.2
title: Appendix S1

description: Excel file containing a complete list of all known fossil fish specimens from Joggins accessioned in museum collections, with revised identification where appropriate. Abbreviations in 'specimen examined?' column: Y = yes; N = no; P = only photograph(s) of specimen examined.
DOI: 10.5061/dryad.ch1bb/2
title: Frost hollows_identification
DOI: 10.5061/dryad.ch1bb/4
title: Site 1-1_establishment
DOI: 10.5061/dryad.ch1bb/5
title: Site 1-1_rings_diag
DOI: 10.5061/dryad.ch1bb/6
title: Site 1-2_establishment
DOI: 10.5061/dryad.ch1bb/7
title: Site 1-2_rings_diag
DOI: 10.5061/dryad.d6t40/1
title: Narg FASTA files for alignment

description: FASTA format files used to derive the narg gene alignment
DOI: 10.5061/dryad.gf643/1
title: _Movie_S1a_Diplura_mouthpart_movement
DOI: 10.5061/dryad.gf643/2
title: _Movie_S1b_Collembole_mouthpart_movement

description: Movie S1b: Video showing the mandible movement in P. flavescens (Collembola) (1st half) and TIFF image stack of the reconstructed microCT dataset of P. flavescens (2nd half). Note the original dataset of the TIFF image stack is 2536x2536 pixel with 2048 single images. The image stack was reduced in size but is available upon request.
DOI: 10.5061/dryad.gf643/3
title: File_S2_Coll_Diplura_md_mx_details+taxon_sampling

description: File S2: PDF file with taxon sampling, details of the structural mouthpart interactions in Collembola and Diplura, and a description of their mandibular and maxillary musculature equipment and its function.
DOI: 10.5061/dryad.gf643/4
title: _3D_model_S3_Diplura_Mandible

description: 3D model S3: 3D model of the mandible-maxilla-hypopharynx complex of Atlasjapyx cf atlas in .wrl format for import into the program Meshlab or other animation programs.
DOI: 10.5061/dryad.jf35g/10
title: Activated Fiber Before Treatment 4

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/11
title: Activated Fiber Before Treatment 5

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/3
title: Relaxed Fiber Before Treatment 3

description: This 	is data from the 600A Digital Controller (Aurora Scientific Inc.) for a relaxed muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/4
title: Relaxed Fiber Before Treatment 4

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for a relaxed muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/5
title: Relaxed Fiber Before Treatment 5

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for a relaxed muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/6
title: Relaxed Fiber Before Treatment 6

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for a relaxed muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/7
title: Activated Fiber Before Treatment 1

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/8
title: Activated Fiber Before Treatment 2

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/9
title: Activated Fiber Before Treatment 3

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.kj731/1
title: Position dependent hearing in three species of bushcrickets

description: Raw data used in: Position-dependent hearing in three species of bushcrickets (Tettigoniidae, Orthoptera) as Excel spreadsheet. For data analyses, thresholds were determined visually as the sound intensity at which neuronal activity was seen in response to at least four of the five stimulus repetitions. For averaging threshold, sound pressure level data were transferred to sound pressure (rel. 20 μPa) and thereafter transformed back to dB SPL for visualization.
DOI: 10.5061/dryad.n36n6/1
title: Figure 4, Profundiconus? hennigi

description: Unaltered, original digital images of specimens photographed under ultraviolet (UV) light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/2
title: Figure 5, Conasprella stenostoma

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/3
title: Figure 6, Conasprella cf. sauros

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/4
title: Figure 7, Conasprella cercadensis and Conasprella kitteredgei

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/5
title: Figure 8, Conasprella ageri

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n81t4/1
title: Dataset-Svensson et al. Oikos 02279

description: The data package consists of an Excel-file, which includes the data-set used in the first sheet and metadata in the second sheet.
DOI: 10.5061/dryad.r4n35/10
title: single-HXT2 with sensors in 0.1% glucose, 2500ng/ml  DOX

description: single-HXT2 with sensors were grown in 0.1% glucose, with 2500ng/ml  DOX. Field of view 41 to 60.
DOI: 10.5061/dryad.r4n35/11
title: single-HXT2 without sensors in 0.1% glucose, no DOX

description: single-HXT2 without sensors were grown in 0.1% glucose, with DOX. Fields of view 1 to 20
DOI: 10.5061/dryad.r4n35/12
title: single-HXT2 without sensors in 0.1% glucose, 2500 ng/ml DOX AND single-HXT4 without sensors in 0.1% or 2% glucose 2500ng/ml DOX

description: Single-HXT2 without sensors were grown in 0.1% glucose, with 2500ng/ml  DOX. Field of view 41 to 60. Single-HXT4 without sensors were grown in 0.1% (Fields of view 41 to 60) or 2% (Fields of view 61 to 80) glucose, with 2500ng/ml DOX.
DOI: 10.5061/dryad.10nj6/1
title: Electronic supplementary material, Dataset S1

description: Mean body sizes, approximated from the natural logarithm of the lower first or second molar area, and the proposed evolutionary relationships between mammalian genera from the early and middle Clarkforkian (Cf1 to Cf2) of the Bighorn and Clarks Fork Basins, Wyoming, USA. Notably, each taxon is assigned an index number (i.e., ‘Index’ column). The mean body size of each taxon is provided for each of the time intervals that the taxon occurs (i.e., ‘size_i’ is the mean body size of the taxon in the older time interval and ‘size_j’ is the mean body size of the taxon in the younger time interval; NA indicates that the taxon does not occur in that time interval). Evolutionary relationships are indicated with specific reference to the index number of taxa, with a number in the ‘ancestor’ column indicating that the taxa is a descendant of the referenced index number; zeros in the ‘ancestor’ columns indicates that there is no ancestor for that taxon in the dataset. For instance, Haplomylus_palustris (i.e., Index taxon 1) does not have an ancestor in the dataset and a zero is recorded within the ‘ancestor’ column for this taxon. However, in the same dataset, Haplomylus_simpsoni (i.e., Index taxon 2) does have an ancestor in the dataset; this ancestor is Haplomylus_palustris and a 1 is recorded in ‘ancestor’ column referring to the index number of Haplomylus_palustris.
DOI: 10.5061/dryad.10nj6/2
title: Electronic supplementary material, Dataset S2

description: Mean body sizes, approximated from the natural logarithm of the lower first or second molar area, and the proposed evolutionary relationships between mammalian genera from the middle and late Clarkforkian (Cf2 to Cf3) of the Bighorn and Clarks Fork Basins, Wyoming, USA. For details of the dataset see caption for electronic supplementary material, dataset S1.
DOI: 10.5061/dryad.10nj6/3
title: Electronic supplementary material, Dataset S3

description: Mean body sizes, approximated from the natural logarithm of the lower first or second molar area, and the proposed evolutionary relationships between mammalian genera from the late Clarkforkian and earliest Wasatchian (Cf3 to Wa0) of the Bighorn and Clarks Fork Basins, Wyoming, USA. For details of the dataset see caption for electronic supplementary material, dataset S1.
DOI: 10.5061/dryad.10nj6/4
title: Electronic supplementary material, Dataset S4

description: Mean body sizes, approximated from the natural logarithm of the lower first or second molar area, and the proposed evolutionary relationships between mammalian genera from the earliest to early Wasatchian (Wa0 to Wa1/2) of the Bighorn and Clarks Fork Basins, Wyoming, USA. For details of the dataset see caption for electronic supplementary material, dataset S1.
DOI: 10.5061/dryad.3qk15/1
title: Main land use classes

description: This file contains GIS information on the main land use classes over the study area (French Alps) at a resolution of 1*1km. Classes come from aggregated Corine Land Cover 2006 classes.
DOI: 10.5061/dryad.3qk15/2
title: Richness in ecosystem services

description: This file contains GIS information on the aggregated distribution of ecosystem services (ES) over the study area (French Alps). Sixteen ES were included as binary datasets (presence/absence - threshold at third quartile) to calculate the number of present ES at a resolution of 1*1km.
DOI: 10.5061/dryad.3r3q4/1
title: Accompanying data for the paper

description: This zip file contains sequence alignments (*.phyl) and phylogenetic trees (*.tree) for the PB2 and RBCL protein-coding genes analysed in the paper. It also contains estimates of fitness values at codon sites for the two proteins. The fitness estimates can be used to calculate the relative non-synonymous substitution rate as explained in the paper (e.g. Eq 3.1).
DOI: 10.5061/dryad.6n8tb/1
title: Model_Presentation_Experiments

description: Model presentation data.
DOI: 10.5061/dryad.6n8tb/2
title: Model Presentation and Egg Rejection Experiments

description: Model Presentation and Egg Rejection Experiments
DOI: 10.5061/dryad.996f5/1
title: Heat resistance with hardening treatment

description: This data file contains hardened and not hardened static heat knockdown time (min) for females and males of heat tolerance  selected and control D. melanogaster regimes (5 lines per regime).
DOI: 10.5061/dryad.ch1bb/10
title: Site 16-1_establishment
DOI: 10.5061/dryad.ch1bb/11
title: Site 16-1_rings_diag
DOI: 10.5061/dryad.ch1bb/12
title: Site 16-2_establishment
DOI: 10.5061/dryad.ch1bb/13
title: Site 16-2_rings_diag
DOI: 10.5061/dryad.ch1bb/14
title: Site 25-1_establishment
DOI: 10.5061/dryad.ch1bb/8
title: Site 1-3_establishment
DOI: 10.5061/dryad.ch1bb/9
title: Site 1-3_rings_diag
DOI: 10.5061/dryad.d6t40/10
title: ClustalO cs alignment

description: Clustal Omega download file for CS gene alignment
DOI: 10.5061/dryad.d6t40/2
title: ClustalO narg alignment

description: Clustal Omega alignment file for the narg gene
DOI: 10.5061/dryad.d6t40/3
title: Rpl8 FASTA files for alignment

description: FASTA files used to derive the rpl8 alignment
DOI: 10.5061/dryad.d6t40/4
title: ClustalO rpl8 alignment

description: Clustal Omega download file for rpl8 alignment
DOI: 10.5061/dryad.d6t40/5
title: Tubulin FASTA files for alignment

description: FASTA files used to derives Tubulin gene alignment
DOI: 10.5061/dryad.d6t40/6
title: ClustalO tubulin alignment

description: Clustal Omega download for tubulin gene alignment
DOI: 10.5061/dryad.d6t40/7
title: Eef1a FASTA file alignments

description: FASTA files used to derive eef1a gene alignment
DOI: 10.5061/dryad.d6t40/8
title: ClustalO eef1a alignment

description: Clustal Omega download for eef1a gene alignment
DOI: 10.5061/dryad.d6t40/9
title: CS FASTA files for alignment

description: FASTA files used to derive CS gene alignment
DOI: 10.5061/dryad.gf643/5
title: _3D_model_S4_Collembola_Mandible

description: 3D model S4: 3D model of the mandible-maxilla-hypopharynx complex of Pogonognathellus flavescens in .wrl-format for import into the program Meshlab or other animation programs.
DOI: 10.5061/dryad.gf643/6
title: _3D_model_S5_Protura_Mandible

description: 3D model S5: 3D model of the mandible-maxilla-hypopharynx complex of Acerentomon sp. (Protura) in .wrl-format for import into the program Meshlab or other animation programs.
DOI: 10.5061/dryad.jf35g/12
title: Activated Fiber Before Treatment 6

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/13
title: Activated Fiber Before Treatment 7

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/14
title: Activated Fiber Before Treatment 8

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations
DOI: 10.5061/dryad.jf35g/15
title: Activated Fiber After Treatment 1

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations following treatment with blebbistatin and EDTA
DOI: 10.5061/dryad.jf35g/16
title: Activated Fiber After Treatment 2

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for an activated muscle fiber experiencing sinusoidal oscillations following treatment with blebbistatin and EDTA
DOI: 10.5061/dryad.jf35g/17
title: Relaxed Fiber After Treatment 1

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for a relaxed muscle fiber experiencing sinusoidal oscillations following treatment with blebbistatin and EDTA
DOI: 10.5061/dryad.jf35g/18
title: Relaxed Fiber After Treatment 2

description: This is data from the 600A Digital Controller (Aurora Scientific Inc.) for a relaxed muscle fiber experiencing sinusoidal oscillations following treatment with blebbistatin and EDTA
DOI: 10.5061/dryad.kg943.1
title: Data from: Not the time or the place: the missing spatio-temporal link in publicly available genetic data
DOI: 10.5061/dryad.kg943.2
title: Data from: Not the time or the place: the missing spatio-temporal link in publicly available genetic data
DOI: 10.5061/dryad.kg943.2/2.2
title: Data_ME15-008_final

description: This excel file contains information obtained from reviewing ME articles to determine rate of public data archiving, and patio-temporal data provision. The first page contains all data plus notes, details of which are outlined in the readme file. The second page can be downloaded as a .csv for use in our R script.
DOI: 10.5061/dryad.kg943.2/3.2
title: All results ME15-008_final R script

description: This R script can be run to generate all results presented in our publication, and includes notes to clarify how these calculations were performed.
DOI: 10.5061/dryad.kg943.2/4.2
title: RDat

description: This data file can be used alongside our R script to generate the results produced in our article. This is identical to page two of our final data excel file. The readme file associated with the excel file should be used to understand the categories here.
DOI: 10.5061/dryad.n36n6/10
title: Figure 13, Conus franklinae

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.
DOI: 10.5061/dryad.n36n6/11
title: Figure 14, Conus gouldi

description: Unaltered, original digital images of specimens photographed under ultraviolet light and figured in the text. Images provided in uncompressed raw (.CR2 or .NEF) and .JPEG formats. Raw files include information about the camera settings used.