cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10058550
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2017-08-21 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058551
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2017-08-22 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058573
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2017-12-15 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058611
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2018-02-09 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058568
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2017-12-14 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058612
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2018-02-12 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058622
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2018-02-19 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.10058684
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2018-04-15 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.5281/zenodo.8238613
title: Archive of Neptune (NSB) database backups

description: This is the state of the Neptune (NSB) database (http://nsb.mfn-berlin.de) as of 2023-06-05 archived by Johan Renaudie..
The database is given as a native PostgreSQL backup (nsb_postgresql.zip) and is also provided here in SQLite for convenience (nsb_sqlite.zip). As the foreign keys are not preserved in the latter, please check Renaudie et al. 2020 to find back the table relations.
Denormalized tables are also provided in file denormalized_table.zip: 

occurrences.csv contains the full unfiltered micropaleontological occurrences recorded in NSB.
filtered_occurrences.csv represent a more typical output from the website, i. e. with possibly reworked specimens, open nomenclature taxa and questionable identifications filtered out.
agemodels.csv finally contains the age models (as a serie of tiepoints) with their metadata
DOI: 10.25345/c51z4240m
title: MassIVE MSV000093221 - SPHINGOSINE 1-PHOSPHATE INITIATED E-SYT1 DEPENDENT ER-PM CONTACTS SUPPORT THE RAPID TRANSPORT OF HDL-DERIVED CHOLESTEROL
title: Data deposited contain results from proximity-dependent biotinylation LC-MS (BioID) experiments in which T-REx Flp-In HEK293 cells express SCARB1 protein fused to biotin carboxylase BirA.
DOI: 10.34740/kaggle/dsv/6855737
title: Data Completion Dataset
DOI: 10.6084/m9.figshare.24434926
title: Supplementary Material for: Efficacy and safety of ferric citrate on hyperphosphatemia among Chinese patients with chronic kidney disease undergoing hemodialysis: a phase III multicenter randomized open-label active-drug controlled study

description: Background: Hyperphosphatemia in CKD patients is positively associated with mortality. Ferric citrate is a potent phosphorus binder that lowers serum phosphorus level and improves iron metabolism. We compared its efficacy and safety with active drugs in Chinese CKD patients with hemodialysis. Trial design: This is an open-label active-drug-controlled multicenter randomized study. Methods: Chinese patients undergoing hemodialysis were randomized into two treatment groups in a 1:1 ratio receiving either ferric citrate or sevelamer carbonate respectively for 12 weeks. Serum phosphorus levels, calcium concentration, and iron metabolism parameters were evaluated at every two weeks. Frequency and severity of adverse events were recorded. Results: 217 (90.4%) patients completed the study, with balanced demographic and baseline characteristics between two groups. Ferric citrate decreased the serum phosphorus level to 0.59±0.54mmol/L, comparable to 0.56 ± 0.62 mmol/L by sevelamer carbonate. There was no significant difference between two groups (P&gt;0.05) in the proportion of patients with serum phosphorus levels reaching the target range, the response rate to the study drug, and the changes of corrected serum calcium concentrations, and intact-PTH levels at the end of treatment. The change of iron metabolism indicators in the ferric citrate group were significantly higher than those in the sevelamer carbonate group. There are 47 (40.5%) patients in the ferric citrate group, and 26 (21.3%) in the sevelamer carbonate group experienced drug-related TEAEs, most were mild and tolerable. Common drug-related TEAEs were "gastrointestinal disorders", including diarrhea (12.9% vs. 2.5%), feacal discoloration (14.7% vs. 0%), and constipation (1.7% vs. 7.4%) in ferric citrate and sevelamer carbonate group respectively. Conclusion: Ferric citrate capsules have good efficacy and safety in the control of hyperphosphatemia in adult patients with CKD undergoing hemodialysis. Efficacy is not inferior to sevelamer carbonate. The TEAEs were mostly mild and tolerated by the patients.
DOI: 10.25444/nhlbi.24468100
title: Data supporting manuscript "Cell-free, high-density lipoprotein-specific phospholipid efflux assay predicts incident cardiovascular disease."

description: <b>A high-density lipoprotein function assay predicts cardiovascular disease risk</b>Levels of HDL-cholesterol and total cholesterol are typically used to calculate the risk of coronary artery disease (CAD), but these measures are imperfect. Assessing HDL function in removing excess lipids that accumulate in arterial lesions may be a better way to predict CAD, but current approaches to measure this function require specialized techniques and sample preparation and cannot be applied in a routine clinical setting. IMasaki Sato, Edward Neufeld and colleagues developed an assay to measure HDL-specific phospholipid efflux based on the binding of endogenous plasma apoA-I and other exchangeable apolipoproteins to artificial lipid-donor particles. In three clinical cohorts, this assay detected associations between efflux function and CAD even after adjustment for other measures of HDL,and could be used to predict coronary artery plaque burden. This assay is amenable to automation and thus could be applied as a routine diagnostic test.
DOI: 10.6084/m9.figshare.24421270.v1
title: Supplementary Material for: Auditory Brainsteam Response Testing in Children with Speech and Language Pathology: A Non-Randomized Observational Study

description: Introduction: The aim of this study was to compare ABR findings of normal hearing preschool children with different types of speech and language pathology. Methods: This retrospective, non-randomized, cohort study was conducted at a tertiary speech and hearing rehabilitation institution according to STROBE guidelines. The study enrolled 123 preschool children diagnosed with speech language pathology and normal hearing. The participants included children with developmental language disorder, autism spectrum disorder, isolated articulation pathology, organic brain lesions, cognitive delay and a group of very young children with clinically significant speech development delay. All patients underwent standard ABR procedures. Results: The latencies were the longest in the group of children with organic lesion, followed by the group of children with ASD, then the group with DLD, and the young children group. In the group of children with articulation pathology and the cognitive delay group, the latencies were the shortest. Discussion/Conclusion: This study showed a connection between several groups of children with language pathology that include comprehension problems and prolongation of ABR latencies.
DOI: 10.5281/zenodo.10063011
title: Characterizing Distributed Mobile Augmented Reality Applications at the Edge

description: README: https://github.com/cao-jacky/characterizing_edge_mar
DOI: 10.5281/zenodo.10063010
title: Characterizing Distributed Mobile Augmented Reality Applications at the Edge

description: README: https://github.com/cao-jacky/characterizing_edge_mar
DOI: 10.6084/m9.figshare.24218925
title: Supplementary Material for: Effects of Early Short-Course Corticosteroids on Immune-Related Adverse Events in Non-Small Cell Lung Cancer Patients Receiving Immune Checkpoint Inhibitors

description: Introduction: In real-world practice, most non-small cell lung cancer (NSCLC) patients receiving combined immunochemotherapy are exposed to short-course corticosteroids following immune checkpoint inhibitor (ICI) infusion to prevent chemotherapy-related adverse events. However, whether this early short-course corticosteroid use prevents immune-related adverse events (irAEs) remains unknown. Methods: Between January 1st 2015 and December 31st 2020, NSCLC patients who received at least one cycle of ICI with or without chemotherapy were enrolled. Early short-course corticosteroids were defined as corticosteroids administered following ICI injection and before chemotherapy on the same day and no longer than 3 days afterwards. The patients were categorized as either “corticosteroid group” or “non-corticosteroid group” depending on their exposure to corticosteroid premedication. The frequencies of irAEs requiring systemic corticosteroid use and irAEs leading to ICI discontinuation were compared between the two groups, and exploratory survival analyses were performed. Results: Among 252 eligible patients, 137 patients were categorized as “corticosteroid group,” and 115 patients as “non-corticosteroid group”. The corticosteroid group enriched patients in the first-line setting (n = 75, 54.7%), compared to the non-corticosteroid group (n = 28, 24.3%). Thirty patients (21.9%) in the corticosteroid group and 35 patients (30.4%) in the non-corticosteroid group developed irAEs requiring systemic corticosteroid use (Odds ratio [OR], 0.64; 95% confidence interval [CI], 0.35 to 1.18; p = 0.15). Eight patients (5.8%) in the corticosteroid group, as compared with 18 patients (15.7%) in the non-corticosteroid group, permanently discontinued ICI due to irAEs (OR, 0.34; 95% CI, 0.12 to 0.85; p = 0.013). Conclusion: Early short-course corticosteroids following each ICI injection may reduce the rate of irAEs that leads to ICIs discontinuation, warranting further investigation of its prophylactic use to mitigate clinically significant irAEs.
DOI: 10.6084/m9.figshare.24218925.v1
title: Supplementary Material for: Effects of Early Short-Course Corticosteroids on Immune-Related Adverse Events in Non-Small Cell Lung Cancer Patients Receiving Immune Checkpoint Inhibitors

description: Introduction: In real-world practice, most non-small cell lung cancer (NSCLC) patients receiving combined immunochemotherapy are exposed to short-course corticosteroids following immune checkpoint inhibitor (ICI) infusion to prevent chemotherapy-related adverse events. However, whether this early short-course corticosteroid use prevents immune-related adverse events (irAEs) remains unknown. Methods: Between January 1st 2015 and December 31st 2020, NSCLC patients who received at least one cycle of ICI with or without chemotherapy were enrolled. Early short-course corticosteroids were defined as corticosteroids administered following ICI injection and before chemotherapy on the same day and no longer than 3 days afterwards. The patients were categorized as either “corticosteroid group” or “non-corticosteroid group” depending on their exposure to corticosteroid premedication. The frequencies of irAEs requiring systemic corticosteroid use and irAEs leading to ICI discontinuation were compared between the two groups, and exploratory survival analyses were performed. Results: Among 252 eligible patients, 137 patients were categorized as “corticosteroid group,” and 115 patients as “non-corticosteroid group”. The corticosteroid group enriched patients in the first-line setting (n = 75, 54.7%), compared to the non-corticosteroid group (n = 28, 24.3%). Thirty patients (21.9%) in the corticosteroid group and 35 patients (30.4%) in the non-corticosteroid group developed irAEs requiring systemic corticosteroid use (Odds ratio [OR], 0.64; 95% confidence interval [CI], 0.35 to 1.18; p = 0.15). Eight patients (5.8%) in the corticosteroid group, as compared with 18 patients (15.7%) in the non-corticosteroid group, permanently discontinued ICI due to irAEs (OR, 0.34; 95% CI, 0.12 to 0.85; p = 0.013). Conclusion: Early short-course corticosteroids following each ICI injection may reduce the rate of irAEs that leads to ICIs discontinuation, warranting further investigation of its prophylactic use to mitigate clinically significant irAEs.
DOI: 10.6084/m9.figshare.24248914
title: Supplementary Material for: Overexpression of VSNL1 enhances cell proliferation in colorectal carcinogenesis

description: Introduction: We have previously reported that overexpression of VSNL1 (Visinin-like protein 1) is frequently observed in advanced colorectal adenocarcinomas and correlates with poorer prognosis. In this study, we determined the levels of VSNL1 expression in the earlier stages of colorectal tumors including adenomas and adenocarcinomas, and attempted to clarify the functional significance of VSNL1 overexpression in colorectal carcinogenesis. Methods: Levels of VSNL expression in colorectal tumor tissues were analyzed using immunohistochemistry. The effects of VSNL1 downregulation and overexpression on cell proliferation, resistance to apoptosis and invasiveness were determined using two VSNL1-overexpressing colorectal cancer cell lines, CW-2 and HCT116 and VSNL1 inducibly expressing SNU-C5, respectively. Gene expression signatures in VSNL1-downregulated CW-2 and HCT116 were identified using transcriptome and gene set enrichment analyses. Results: VSNL1 expression was restricted to only a few crypt cells in the non-tumorous epithelium, whereas it became enhanced in adenomas and adenocarcinomas with the progression of tumorigenesis. Downregulation of VSNL1 in CW-2 and HCT116 cells suppressed their proliferation through induction of apoptosis. Conversely, overexpression of VSNL1 in SNU-C5 cells enhanced resistance to anoikis. Transcriptome and gene set enrichment analyses revealed that downregulation of VSNL1 altered the expression level of the apoptosis-related gene set in CW-2 and HCT116 cells. Conclusion: VSNL1 plays a role in both the development and progression of colorectal tumors by enhancing cell viability.
DOI: 10.6084/m9.figshare.24248914.v1
title: Supplementary Material for: Overexpression of VSNL1 enhances cell proliferation in colorectal carcinogenesis

description: Introduction: We have previously reported that overexpression of VSNL1 (Visinin-like protein 1) is frequently observed in advanced colorectal adenocarcinomas and correlates with poorer prognosis. In this study, we determined the levels of VSNL1 expression in the earlier stages of colorectal tumors including adenomas and adenocarcinomas, and attempted to clarify the functional significance of VSNL1 overexpression in colorectal carcinogenesis. Methods: Levels of VSNL expression in colorectal tumor tissues were analyzed using immunohistochemistry. The effects of VSNL1 downregulation and overexpression on cell proliferation, resistance to apoptosis and invasiveness were determined using two VSNL1-overexpressing colorectal cancer cell lines, CW-2 and HCT116 and VSNL1 inducibly expressing SNU-C5, respectively. Gene expression signatures in VSNL1-downregulated CW-2 and HCT116 were identified using transcriptome and gene set enrichment analyses. Results: VSNL1 expression was restricted to only a few crypt cells in the non-tumorous epithelium, whereas it became enhanced in adenomas and adenocarcinomas with the progression of tumorigenesis. Downregulation of VSNL1 in CW-2 and HCT116 cells suppressed their proliferation through induction of apoptosis. Conversely, overexpression of VSNL1 in SNU-C5 cells enhanced resistance to anoikis. Transcriptome and gene set enrichment analyses revealed that downregulation of VSNL1 altered the expression level of the apoptosis-related gene set in CW-2 and HCT116 cells. Conclusion: VSNL1 plays a role in both the development and progression of colorectal tumors by enhancing cell viability.
DOI: 10.25345/c5x63bg6d
title: MassIVE MSV000093222 - Stable-isotope analysis of TFA and MRFA using ESI-Orbitrap IRMS
title: Data analyzed within Procedure 1 in Kantnerova et al. 202X in Nature Protocols. Procedure 1 describes a direct infusion analysis using an easily accessible Orbitrap MS calibration solution FlexMix, analyzing its two compounds: a) trifluoroacetate (TFA) in the negative ESI mode, and b) the peptide MRFA (Met-Arg-Phe-Ala) and its amino acid fragments (MS/MS analysis) in the positive ESI mode. The TFA data were collected using a Thermo Scientific Orbitrap Exploris 240 Isotope Solutions. The MRFA data were collected using a Thermo Scientific Orbitrap Exploris 480 Isotope Solutions. RAW files were processed using the IsoX software (version 2022) using the isotopologs.tsv files as input. Before rerunning the IsoX data analysis, remove the suffixes "_TFA", "_MRFA" and "_MRFA_2" from the respective .tsv files.
DOI: 10.5281/zenodo.10024056
title: Global increase in tropical cyclone ocean surface waves

description: The data and codes in this repository can be used to support the main conclusion in the manuscript "Global increase in tropical cyclone ocean surface waves" by Shi et al., submitted to Nature Communications.
DOI: 10.5281/zenodo.10024055
title: Global increase in tropical cyclone ocean surface waves

description: The data and codes in this repository can be used to support the main conclusion in the manuscript "Global increase in tropical cyclone ocean surface waves" by Shi et al., submitted to Nature Communications.
DOI: 10.6084/m9.figshare.24476821
title: 20231102_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.24476821.v1
title: 20231102_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials