cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5284/1100069
title: WallCAP: Heritage At Risk (HAR)

description: WallCAP, funded by the National Lottery Heritage Fund, combined the ethos of community archaeology to meet key aims relating to the archaeological research, conservation, and management of the Hadrian's Wall World Heritage Site. There were two primary strands of focused activity. This collection brings together the results of the Heritage at Risk (HAR) strand. Over the course of the project, WallCAP completed fieldwork at six sites along Hadrian's Wall, with the aim of improving our knowledge of these sites in order to better protect and manage them, or improving their condition so they could be removed from Historic England's Heritage at Risk register. The HAR strand undertook research that met key objectives in the Hadrian's Wall Research Framework as well as better understanding risks or resolving risks to specific sites. Our key excavations at Cambeck and Corbridge in 2019 and 2021 involved a large number of WallCAP volunteers, who gained valuable experience in excavation, survey and recording techniques. Information within this archive is organised by site, where excavation reports, specialist reports and other data can be accessed.
DOI: 10.5284/1100070
title: WallCAP Project Digital Archive: Stone Sourcing and Dispersal (SSD)

description: WallCAP, funded by the National Lottery Heritage Fund, combined the ethos of community archaeology to meet key aims relating to the archaeological research and conservation and management of the Hadrian's Wall World Heritage Site. There were two primary strands of focused activity. This collection brings together the results of the Stone Sourcing & Dispersal (SSD) strand. The fieldwork and research undertaken for this strand focused on understanding the 'stone biographies' of Hadrian's Wall, through analysis of the geology of the region, the fabric of the Wall, and tracing this to prospective quarries and post-Roman structures that reused Wall-fabric. WallCAP volunteers were able to participate in a number of geology walks and fieldtrips, and participated in SSD in Action, where they recorded Wall stone within the fabric of Hadrian's Wall and of post-Roman buildings. Project staff took samples of Wall stone during excavations, and from quarry sites for petrographic analysis.
DOI: 10.6084/m9.figshare.24079473
title: Northern Fur Seal Counts in Weekly Surveys of Polovina Cliffs Rookery, St. Paul Island, Alaska (USA) during Autumn, 2016-2020

description: This dataset contains observations of northern fur seals and environmental conditions on Polovina Cliffs Rookery on St. Paul Island, Alaska, USA in 2016-2020. These observations were collected during surveys of the rookery by environmental professionals from the Aleut Community of St. Paul Island Tribal Government. These surveys were performed annually during the autumn period in which animals leave the rookery to begin their migration through the North Pacific Ocean.Once per week during the departure period, 1-2 observers counted adult female northern fur seals (laaqudan) and pups (laaqudadan) in five geographically separate sections of the rookery, and collected concurrent observations of weather, sea state, tide, and general conditions on the rookery. Observations were collected using a standardized protocol, data input into a mobile application in real time, and archived in an online database designed for the community’s local environmental monitoring program.Data include the observation start and end times in local time, the observers present, wind speed and direction, sea state, tidal elevation, air temperature in degrees Fahrenheit, observer comments, and type of weather conditions observed (e.g., rain, partly sunny). For each weekly survey, there are unique rows for each section of the rookery surveyed and counts of each age/sex class (adult female, versus pups of either sex) within that section. Survey information includes the vantage point and view from which counts were made, the observer location, the presence or absence of animals, confidence in the identification, the count in numbers, the sex and age class corresponding to that count, the location type of the counts (e.g., shoreline, onshore), animal movement direction, the count trends, the observation direction, and visibility. Where available, there is also detailed information about the observation location and observed behaviors.These data are used in analyses of Pelland et al. 2024 (doi:10.1139/cjz-2023-0212).These data were collected by the Ecosystem Conservation Office, Aleut Community of St. Paul Island Tribal Government under NOAA (US) National Marine Fisheries Service Scientific Research Permit numbers NA16NMF4390123, NA17NMF4390134, NA18NMF4390163, NA19NMF4390120, and NA20NMF4390060.
DOI: 10.6084/m9.figshare.26014612
title: Supplementary Material for: The Study of SRSF1 Regulates Abnormal Alternative Splicing of BCL2L11 and the Role in Refractory Acute Ayeloid Leukemia

description: Introduction: Abnormalities in splicing factors, such as mutations or deregulated expression, can lead to aberrant splicing of target genes, potentially contributing to the pathogenesis of acute myeloid leukemia (AML). Despite this, the precise mechanism underlying the abnormal alternative splicing induced by SRSF1, a splicing factor associated with poor AML prognosis, remains elusive.
Methods: Using strict splicing criteria, we globally screened for alternative splicing(AS) events in NPMc-positive and NPMc-negative AML samples from TCGA. An AS network associated with AML prognosis was then established. Functional assays, including CCK-8, flow cytometry, and Western blot, were conducted on K562 and THP-1 cells overexpressing SRSF1. Cell viability following 72-hour Omipalisib treatment was also assessed. To explore the mechanism of SRSF1-induced AS, we created a BCL2L11 miniGene with a site-specific mutation at its branch point. The AS patterns of both wild-type and mutant miniGenes were analyzed following SRSF1 overexpression in HEK-293T, along with the subcellular localization of different spliceosomes.
Results: SRSF1 was significantly associated with AML prognosis. Notably, its expression was markedly upregulated in refractory AML patients compared to those with a favorable chemotherapy response. Overexpression of SRSF1 promoted THP-1 cell proliferation, suppressed apoptosis, and reduced sensitivity to Omipalisib. Mechanistically, SRSF1 recognized an aberrant branch point within the BCL2L11 intron, promoting the inclusion of a cryptic exon 3, which in turn led to apoptosis arrest.
Conclusions: Overexpression of SRSF1 and the resulting abnormal splicing of BCL2L11 are associated with drug resistance and poor prognosis in AML.
DOI: 10.6084/m9.figshare.26022067
title: Supplementary Material for: Comparative brain morphology of cleaning and sponge-dwelling Elacatinus gobies

description: Introduction
Comparative studies of brain anatomy between closely related species have been very useful in demonstrating selective changes in brain structure. Within-species comparisons can be particularly useful for identifying changes in brain structure caused by contrasting environmental selection pressures. Here, we aimed to understand whether differences within and between species in habitat use and foraging behaviour influence brain morphology, on both ecological and evolutionary time scales. 
Methods 
We used as a study model three species of the Elacatinus genus that differ in their habitat-foraging mode. The obligatory cleaning goby Elacatinus evelynae inhabits mainly corals and feeds mostly on ectoparasites removed from larger fish during cleaning interactions. In contrast, the obligatory sponge-dwelling goby Elacatinus chancei inhabits tubular sponges and feeds on microinvertebrates buried in the sponges’ tissues. Finally, in the facultatively cleaning goby Elacatinus prochilos, individuals can adopt either phenotype, the cleaning or the sponge-dwelling habitat-foraging mode. By comparing the brains of the facultative goby phenotypes to the brains of the obligatory species we can test whether brain morphology is better predicted by phylogenetic relatedness or the habitat-foraging modes (cleaning x sponge-dwelling). 
Results
We found that E. prochilos brains from both types (cleaning and sponge-dwelling) were highly similar to each other. Their brains were in general more similar to the brains of the most closely related species, E. evelynae (obligatory cleaning species), than to the brains of E. chancei (sponge-dwelling species). In contrast, we found significant brain structure differences between the cleaning species (E. evelynae and E. prochilos) and the sponge-dwelling species (E. chancei). These differences revealed independent changes in functionally correlated brain areas that might be ecologically adaptive. E. evelynae and E. prochilos had a relatively larger visual input processing brain axis and a relatively smaller lateral line input processing brain axis than E. chancei. 
Conclusion
The similar brain morphology of the two types of E. prochilos corroborates other studies showing that individuals of both types can be highly plastic in their social and foraging behaviours. Our results in the Elacatinus species suggest that morphological adaptations of the brain are likely to be found in specialists whereas species that are more flexible in their habitat may only show behavioral plasticity without showing anatomical differences.
DOI: 10.6084/m9.figshare.26778394
title: Chromosome-level genome assembly and annotation files of <i>Zanthoxylum nitidum</i>

description: Chromosome-Level Genome of <i>Zanthoxylum nitidum</i>, Prediction of Protein Coding Genes, and CDS and PEP Sequences files
DOI: 10.6084/m9.figshare.27282585
title: Supplementary Material for: Serum Autotaxin Level Positively Associates with Metabolic Associated Fatty Liver Disease and Hyperuricemia in Postmenopausal Women

description: Introduction: Autotaxin is an adipokine known to affect energy metabolism and lipid homeostasis. We aimed to evaluate serum autotaxin levels in metabolic associated fatty liver disease (MAFLD) and other metabolic disorders in postmenopausal women.
Methods: Postmenopausal women who received an annual health examination were included. The metabolic and demographic characteristics of the subjects were collected, including age, gender, weight, height, blood pressure, and biochemical parameters. Serum autotaxin level was determined by ELISA. 
Results: This cross-sectional includes 20 postmenopausal women and 20 age-paired healthy controls. MAFLD patients showed significant metabolic disturbance presented with increased BMI, blood pressure (P＜0.001) and decreased HDL-C (P＜0.05), as well as liver injury companied by elevated ALT (P＜0.05). Serum autotaxin levels were statistically higher in MAFLD (253.1±52.1 vs. 202.2±53.2 ng/mL; P &lt; 0.01) and positively correlated with ALT (P＜0.001), GGT and BMI (P＜0.01), SBP and TG (P＜0.05). Higher autotaxin group demonstrated worsen metabolic states with greater proportion of MAFLD, higher BMI (P＜0.01) and ALT (P＜0.05). Logistic regression analysis revealed that serum autotaxin levels would positively independently predicted MAFLD (OR 1.049, 95% CI 1.001-1.098, P＜0.05) with AUC of 0.763. Serum level of autotaxin is significantly elevated in hyperuricemia group (257.3±60.9 vs. 214.5±49.4 ng/mL; P &lt; 0.05), and positively correlated with uric acid level (P＜0.01). Serum autotaxin would also act as diagnosing parameter of hyperuricemia with AUC of 0.706.
Conclusions: Among postmenopausal women, serum autotaxin level is significantly elevated in MAFLD and related to multiple metabolic characteristics, especially hyperuricemia, which would thus serve as a potential non-invasive biomarker as well as a therapeutic target.
DOI: 10.6084/m9.figshare.27649653
title: Alignments and ML phylogenies of DNA barcodes of 1496 Asian fern samples.

description: Alignments in phylip and tree in newick formats
DOI: 10.6084/m9.figshare.8805110
title: Dataset and Code: The impact of rising CO2 and acclimation on the response of US forests to global warming

description: This file describes the supporting information datasets and codes associated to the publication <b>"The impact of rising CO2 and acclimation on the response of US forests to global warming"</b> by John S. Sperry, Martin D. Venturas, Henry N. Todd, Anna T. Trugman, William R.L. Anderegg, Yujie Wang, and Xiaonan Tai.<br>The <b>README.txt</b> file describes the contents of the four compressed folders:<br><b>(1) Dataset S6:</b> "Weather_Data.zip". This folder contains the weather data used for running the forest response simulations and the file "README_Weather_Data.txt" that fully describes the datasets and structure of the CSV files.<br><b>(2) Dataset S7: </b>"Output_Data.zip". This folder contains the main outputs of the Gain-Risk model that comprise the mainresults and findings of the study. This folder contains the file "README_Output_Data.txt" that explains in detail the structure and content of the CSV files.<br><b>(3) Code S1: </b>"SperryModelCPP_0.23.zip". This folder contains the code of the Gain-Risk model used in the study. The folder also contains the file "readme_model.txt", with details on how to run the model and on the additional files contained in the folder.<br><b>(4) Code S2:</b> "Acclimation_Tools.zip". This folder contains two Excel spreadsheets with the Visual Basic Application (VBA) code used to run the acclimation routines. The file "readme-acclim.txt" describes in detail how to use the files.
DOI: 10.1285/i1825229xv8n1p1
title: Influence of chemical fixative on the cell size of phytoplankton guilds

description: 1 - The quali-quantitative analysis of phytoplankton guild is usually carried out according to the method of Uthermöl (or sedimentation method), but in each step can be present a component of error that can affect the reliability of the final result, from sampling to data analysis.
2 - The following work is intended to focus attention on an important aspect of the phytoplankton analysis: the fixation, with the aim of assessing the effect of two chemical fixatives, formalin and Lugol’s solution, on the taxonomic composition and size structure of phytoplankton guilds. Accordingly, water samples were collected from three different water bodies, coastal marine area facing the Alimini Lake (Southern Adriatic Sea), transitional water (Alimini Grande Lake) and freshwater (Fontanelle Lake). The three water bodies are characterized by a different taxonomic structure of phytoplankton guilds due to difference in chemical-physical and hydrodynamic conditions.
3 - The samples were fixed and then analyzed according to a monthly time series for a period of 125 days.
4 - This study clearly shows that do not exist a better fixative, but on the basis of the phytoplankton classes observed in a sample we could prefer one of the two fixative
DOI: 10.13026/c2607m
title: MIMIC-III Waveform Database

description: The MIMIC-III Waveform Database contains 67,830 record sets for approximately
30,000 ICU patients. Almost all record sets include a waveform record
containing digitized signals (typically including ECG, ABP, respiration, and
PPG, and frequently other signals) and a "numerics" record containing time
series of periodic measurements, each presenting a quasi-continuous recording
of vital signs of a single patient throughout an ICU stay (typically a few
days, but many are several weeks in duration). A [subset of this
database](/content/mimic3wdb-matched/) contains waveform and numerics records
that have been matched and time-aligned with [MIMIC-III Clinical
Database](/content/mimiciii/) records.

  *[ICU]: Intensive care unit
  *[ECG]: Electrocardiogram
  *[ABP]: Arterial blood pressure
  *[PPG]: Photoplethysmogram
DOI: 10.15468/dl.cntx35
title: Occurrence Download

description: A dataset containing 395874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Theridiidae"
 ]
}

 The dataset includes 395874 records from 1124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014050-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/nhsnn2
title: Improving knowledge of Asian pteridophytes through DNA sampling of specimens in regional collections

description: The ferns, lycophytes and seed-free vascular plants commonly described as pteridophytes exhibit hyperdiversity in the insular vegetation that often characterizes Asian floras. Despite harboring biodiversity hotspots, these plants and their georegions have been poorly surveyed, particularly in Southeast Asia, where one third of the world's pteridophyte species are concentrated. More than 60 per cent of the approximately 4,500 species lack georeferenced records in GBIF and only 6 per cent have been DNA barcoded.This project aims to increase the available knowledge on Asian pteridophytes by compiling a georeferenced occurrence dataset that includes images, DNA barcodes and other vouchering information from thousands of recent collections, building on the efforts of the Taiwan Pteridophyte Research Group and its Southeast Asian collaborators. The project team will set up a workflow incorporating next-generation sequencing for 1,500 Asian pteridophyte specimens from selected collections in Taiwan, Vietnam, the Philippines, Malaysia and other Southeast Asian countries that can fill in taxonomic and geographic gaps and represent Asian pteridophyte diversity.Mobilization of and access to these vouchered and georeferenced DNA-derived records will advance further research into the biogeography of pteridophytes and other terrestrial vegetation and support the development of novel approaches to monitor biodiversity along the spatiotemporal scale, including metabarcoding of the invisible diversity held in soil and spore banks.
DOI: 10.17632/7sys44td9c.1
title: Saudi Currency Dataset

description: Automatic detection and recognition of banknotes could be a highly important technology for people with visual impairments as well as banks, providing easy administration for dealing with diverse paper currencies. With this purpose in mind, we created the Saudi riyal banknotes dataset with annotations.  We utilized a smartphone camera to create our new dataset consist of Saudi riyals.
All market-acceptable currency notes are used, including 1, 5 riyal notes, 10 and 20 riyal notes, 50 riyal notes, and new 100, 200, and 500 riyal notes. We capture photos from multiple viewpoints to extract additional information from the image. For each Saudi riyal, we employ twelve distinct angles. Our dataset includes 2000 labeled photos. For annotating our photos in our dataset, we utilize Pascal Visual Object Classes. The dataset is made up of "train" and "test" photos in a 90:10 ratio.
DOI: 10.17632/bb5jb7t2zv.2
title: Gender Equality in Research & Innovation – 2024 Review

description: Elsevier's 2024 Gender Report tracks and analyzes data across 18 countries and 2 regions (EU 27 and the world) examining women’s performance in research and innovation across disciplines and career stages. Our Report provides new insights into interdisciplinarity, multidisciplinarity, grant recipients, patent applications, open access, UN Sustainable Development Goals (SDG) research areas, as well as alternative metrics including policy and media citations. 

More information at https://www.elsevier.com/en-au/insights/gender-and-diversity-in-research
DOI: 10.18739/a2pv6b79w
title: Arc2kmTM: Arctic 2 kilometer Tide Model, 2021

description: The Arctic 2 km (kilometer) Tide Model (Arc2kmTM) is a barotropic ocean tide model on a 2x2 km polar stereographic grid, developed using the Regional Ocean Modeling System (ROMS). Arc2kmTM consists of spatial grids of complex amplitude coefficients for sea surface height and depth-integrated currents (“volume transports”) for 8 principal tidal constituents: 4 semidiurnal (M2, S2, K2, N2) and 4 diurnal (K1, O1, P1, Q1). See the Methods section for a description of model development. The Arc2kmTM gridded files are in binary format (see Arc2kmTM_FileFormat.pdf) and are designed to be used with the open-source software packages: the Matlab “Tide Model Driver” (TMD) toolbox, the Python “pyTMD” package, and the FORTRAN “OSU Tidal Prediction Software” (OTPS). These packages allow the user to browse the model for different constituents, and to make tidal predictions for any time at any location within the model domain. Please also check the Earth and Space Research (ESR) Polar Tide Model webpage (https://www.esr.org/research/polar-tide-models/) and our Arctic Data Center Portal (https://arcticdata.io/catalog/portals/ArcticTides) for other Arctic-region barotropic tide models and more information on software packages.
DOI: 10.24432/c50p49
title: Optical Recognition of Handwritten Digits
DOI: 10.3886/e208347v1
title: ECIN Replication Package for "Optimal Lockdowns Under Constraints"

description: This package replicates the findings in "Optimal Lockdown Under Constraints."<br>It includes an empirical folder and an optimization folder. Please read the README.txt for further information. <br><br>
DOI: 10.4121/20691659.v2
title: Trajectory data Amsterdam Zuid (track 3-4) underlying the PhD-thesis: Mind your passenger! The passenger capacity of platforms at railway stations in the Netherlands

description: The PhD-thesis <em>Mind your passenger! The passenger capacity of platforms at railway stations in the Netherlands</em> constitutes a first step towards measuring the passenger capacity of station platforms. First, it defines platform capacity on the basis of the locations of queues at exit escalators from platforms, the presence of passengers in the platform-edge danger zone and the duration of stops. It then renders capacity measurable using real-life data covering train stops and passenger behaviour on platforms. <br> The trajectory data that were used for this research were generated by the SMART Station pedestrian sensors on the platform. See chapter 4 of the thesis for more information about the data. See the instructions in this dataset for an example of the data processing. Related datasets: https://doi.org/10.4121/20692247 https://doi.org/10.4121/20683062
DOI: 10.25549/inscriptifact-ouc110876123
title: Persepolis Fortification Elamite Tablet 0502, PF-NN 0502

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF-NN 0502 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impressions on on left edge, right edge. ❧ [Physical Object Note:] Damage or cracks on bottom edge, left edge, obverse, right edge and reverse.
DOI: 10.15468/dl.6dfpwq
title: Occurrence Download

description: A dataset containing 1050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-5.86879 36.09064,-5.61099 35.94975,-5.37517 36.0087,-5.44312 36.30248,-5.78985 36.33245,-5.86879 36.09064))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 1050 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061329-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.