cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6564303
title: API Description-Based Conformance Assessment of Architectural Design Decision: Dataset and Code

description: This is the dataset and related code artifact for the article "API Description-Based Conformance Assessment of Architectural Design Decision". <strong>Abstract of the article:</strong> Microservice APIs are often designed based on Domain-Driven Design. It can be challenging to judge the quality<br> of the relation between such a design and the implemented API, especially when facing frequent releases and changes in an API and its design models. Conformance assessment aims to improve software quality by bridging the gap between design and implementation. However, manual conformance assessment is time-intensive and error prone. This paper proposes a novel approach for automated conformance assessment of API designs in relation to API design decisions. Our approach aims to provide<br> the first fully automated conformance assessment approach based solely on the code of API Descriptions such as OpenAPI. We<br> applied and exemplified our approach for checking conformance to the patterns and practices in an API design decision for mapping links in a system’s domain model to API representations. The total accuracy score (F1-measure) for decision option identification in our multi-case study for this decision is 97.22%.
DOI: 10.15151/esrf-es-845373294
title: Structure of methylamine-induced human α2-macroglobulin (hα2M)

description: α2-Macroglobulin (α2M) is a universal tetrameric suicide inhibitor of 720 kDa that engulfs proteinases after cleavage in a bait region, which triggers major rearrangement from an open, native to a closed, induced form. We purified human α2M (hα2M) from blood and unveiled the different stages of the inhibitory process in the form of the native unbound form, two induced peptidase-bound forms, and several intermediate states. This has allowed us to determine the sequence of events underlying the unique subjacent “Venus flytrap” mechanism. To this aim, we also employed data collected at ESRF C01 under proposal MX-2154. These results have just been accepted for publication. Here, we apply for new time to collect data on methylamine-activated hα2M to compare the structure of this chemically-induced variant with that of the peptidase-induced ones.
DOI: 10.5281/zenodo.6802738
title: Magnetic imaging with spin defects in hexagonal boron nitride

description: Data relative to the publication arXiv:2207.10477
description: This work was supported by the French Agence Nationale de la Recherche under the program ESR/EquipEx+ (grant number ANR-21-ESRE-0025), the Institute for Quantum Technologies in Occitanie through the project BONIQs, an Office of Naval Research award number N000142012474 and by the U.S. Department of Energy, Office of Nuclear Energy under DOE Idaho Operations Office Contract DE-AC07-051D14517 as part of a Nuclear Science User Facilities experiment.
DOI: 10.6084/m9.figshare.20311524.v4
title: Greta Thunberg's Twitter data mining

description: Bigrams, words frequency, frameand engagement analysis of the tweets published by Greta Thunberg between 2019 and 2022.
DOI: 10.5281/zenodo.6802737
title: Magnetic imaging with spin defects in hexagonal boron nitride

description: Data relative to the publication arXiv:2207.10477
description: This work was supported by the French Agence Nationale de la Recherche under the program ESR/EquipEx+ (grant number ANR-21-ESRE-0025), the Institute for Quantum Technologies in Occitanie through the project BONIQs, an Office of Naval Research award number N000142012474 and by the U.S. Department of Energy, Office of Nuclear Energy under DOE Idaho Operations Office Contract DE-AC07-051D14517 as part of a Nuclear Science User Facilities experiment.
DOI: 10.6084/m9.figshare.20311524
title: Greta Thunberg's Twitter data mining & Frame Analysis

description: Bigrams, words frequency, frame and engagement analysis of the tweets published by Greta Thunberg between 2019 and 2022.
DOI: 10.6084/m9.figshare.20311524.v5
title: Greta Thunberg's Twitter data mining & Frame Analysis

description: Bigrams, words frequency, frame and engagement analysis of the tweets published by Greta Thunberg between 2019 and 2022.
DOI: 10.6084/m9.figshare.20325408
title: Table S2. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Complete list of specimens genotyped for SNPs, listing code numbers for each fish, SNP analysis (low or medium density), species identification, sex, field code, detailed locality, date collected and collector.
DOI: 10.6084/m9.figshare.20325408.v2
title: Table S2. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Complete list of specimens genotyped for SNPs, listing code numbers for each fish, SNP analysis (low or medium density), species identification, sex, field code, detailed locality, date collected and collector.
DOI: 10.6084/m9.figshare.20325414
title: Table S4. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Concatenated SNP variants from 186 individuals in the low coverage SNP dataset. Individuals examined for morphological analysis are labeled with “exam” and holotypes, paratypes, and voucher specimens are also indicated.
DOI: 10.6084/m9.figshare.20325420
title: Table S3. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Concatenated SNP variants from 330 individuals in the medium coverage SNP dataset. Individuals examined for morphological analysis are labeled with “exam” and holotypes, paratypes, and voucher specimens are also indicated.
DOI: 10.6084/m9.figshare.20325414.v2
title: Table S4. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Concatenated SNP variants from 186 individuals in the low coverage SNP dataset. Individuals examined for morphological analysis are labeled with “exam” and holotypes, paratypes, and voucher specimens are also indicated.
DOI: 10.6084/m9.figshare.20325408.v1
title: Table S2. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (gobiiformes: gobioidei: eleotridae: <i>Hypseleotris</i>)

description: Complete list of specimens genotyped for SNPs, listing code numbers for each fish, SNP analysis (low or medium density), species identification, sex, field code, detailed locality, date collected and collector.
DOI: 10.6084/m9.figshare.20325420.v2
title: Table S3. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Concatenated SNP variants from 330 individuals in the medium coverage SNP dataset. Individuals examined for morphological analysis are labeled with “exam” and holotypes, paratypes, and voucher specimens are also indicated.
DOI: 10.6084/m9.figshare.20325423
title: Table S1. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Complete list of specimens examined morphology in this study, listing code numbers for each fish and DNA extraction, type status (holotype/paratype/allotype or non-type examined specimen), SNP analysis (low or medium density), species identification, sex, field code, detailed locality, date collected and collector.
DOI: 10.6084/m9.figshare.20325414.v1
title: Table S4. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (gobiiformes: gobioidei: eleotridae: <i>Hypseleotris</i>)

description: Concatenated SNP variants from 186 individuals in the low coverage SNP dataset. Individuals examined for morphological analysis are labeled with “exam” and holotypes, paratypes, and voucher specimens are also indicated.
DOI: 10.6084/m9.figshare.20325420.v1
title: Table S3. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (gobiiformes: gobioidei: eleotridae: <i>Hypseleotris</i>)

description: Concatenated SNP variants from 330 individuals in the medium coverage SNP dataset. Individuals examined for morphological analysis are labeled with “exam” and holotypes, paratypes, and voucher specimens are also indicated.
DOI: 10.6084/m9.figshare.20325423.v2
title: Table S1. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: <i>Hypseleotris</i>)

description: Complete list of specimens examined morphology in this study, listing code numbers for each fish and DNA extraction, type status (holotype/paratype/allotype or non-type examined specimen), SNP analysis (low or medium density), species identification, sex, field code, detailed locality, date collected and collector.
DOI: 10.6084/m9.figshare.20325423.v1
title: Table S1. from Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (gobiiformes: gobioidei: eleotridae: <i>Hypseleotris</i>)

description: Complete list of specimens examined morphology in this study, listing code numbers for each fish and DNA extraction, type status (holotype/paratype/allotype or non-type examined specimen), SNP analysis (low or medium density), species identification, sex, field code, detailed locality, date collected and collector.
DOI: 10.6084/m9.figshare.19549495.v2
title: Comparative genomics of "Candidatus Nanohaloarchaeota"

description: These are the raw data and scripts for the manuscript <strong>Comparative genomic insights into the evolution of </strong><em><strong>Halobacteria</strong></em><strong>-associated "</strong><em><strong>Candidatus</strong></em><strong> Nanohaloarchaeota"</strong>.
DOI: 10.34740/kaggle/dsv/3972676
title: AutoXGB
DOI: 10.5281/zenodo.6881171
title: Data for "Patient-Important Outcomes Other Than Mortality in Contemporary ICU Trials: A Scoping Review"

description: This upload contains the final datasets analyzed in the manuscript "Patient-Important Outcomes Other Than Mortality in Contemporary ICU Trials: A Scoping Review", published in Critical Care Medicine, 2022 (https://doi.org/10.1097/CCM.0000000000005637). The Supplemental Digital Content included with the primary manuscript includes a data dictionary, additional details, and the analysis code used.
DOI: 10.5281/zenodo.6881170
title: Data for "Patient-Important Outcomes Other Than Mortality in Contemporary ICU Trials: A Scoping Review"

description: This upload contains the final datasets analyzed in the manuscript "Patient-Important Outcomes Other Than Mortality in Contemporary ICU Trials: A Scoping Review", published in Critical Care Medicine, 2022 (https://doi.org/10.1097/CCM.0000000000005637). The Supplemental Digital Content included with the primary manuscript includes a data dictionary, additional details, and the analysis code used.
DOI: 10.6084/m9.figshare.20157005
title: Supplementary Material for: Prevalence and incidence of dry eye disease in Asia: a systematic review and meta-analysis

description: Background: Dry eye disease (DED) is the most common ocular surface disease, which severely affects the quality of life. An overall estimate of the prevalence, incidence, and risk factors of DED in Asia would help in planning and implementing appropriate public health strategies. Objectives: The present study aimed to study the epidemiology of DED in Asia. Methods: A comprehensive and systematic search was performed using several databases, including PubMed, Cochrane Library, and Web of Science, in January 2021. A random-effects meta-analysis was performed on logit-transformed prevalence and incidence rates to calculate pooled prevalence and incidence estimates. Meta-regression and subgroup analyses were performed to explain the heterogeneity. Results: Among the 6,742 articles identified, 23 were included in the analysis, with a total sample size of 1,488,935 subjects. Twenty studies reported the prevalence of DED in Asia, two studies reported the incidence, and one study reported both prevalence and incidence. The estimated pooled prevalence of DED in any population in Asia was 20.1% (95% confidence interval [1]: 13.9%–28.3%), and the incidence 16.7% (95% CI: 0 %–34.9%). The prevalence rate of DED in males and females was 16.4% (95% CI: 10.0%–25.8%) and 21.7% (95% CI: 14.7%–30.8%; P &lt; 0.001), respectively. In general, the prevalence increased with age. The risk factors considered for specific populations were not significant, and the prevalence in the general population, excluding the populations considered at risk, was similar at 20.9% (95% CI: 12.8%–32.1%). Conclusions: DED is common in Asian populations and causes a significant disease burden. Its prevalence is higher in females than that in males, and it tends to increase in severity with age. Further research on additional risk factors is needed to adequately explain the epidemiology of DED in Asia.
DOI: 10.5281/zenodo.6881335
title: Webis-Web-Archive-Quality-22

description: Dataset accompanying the TPDL'22 publication "Visual Web Archive Quality Assessment" of Theresa Elstner, Johannes Kiesel, Lars Meyer, Max Martius, Sebastian Schmidt, Benno Stein, and Martin Potthast.
DOI: 10.5281/zenodo.6881334
title: Webis-Web-Archive-Quality-22

description: Dataset accompanying the TPDL'22 publication "Visual Web Archive Quality Assessment" of Theresa Elstner, Johannes Kiesel, Lars Meyer, Max Martius, Sebastian Schmidt, Benno Stein, and Martin Potthast.
DOI: 10.6084/m9.figshare.20357475
title: Molecular evolution of vision-related genes may contribute to marsupial photic niche adaptations

description: Vision plays an essential role in the life of many animals. While most mammals are night-active (nocturnal), many have adapted to novel light environments. This includes diurnal (day-active) and crepuscular (twilight-active) species. Here, we used integrative approaches to investigate the molecular evolution of 112 vision-related genes across 19 marsupial genomes representing most marsupial orders. We found that four genes (<em>GUCA1B</em>, <em>GUCY2F</em>, <em>RGR</em>, and <em>SWS2</em>) involved in retinal phototransduction likely became functionally redundant in the ancestor of marsupials, a group of largely obligate nocturnal mammals. We also show evidence of rapid evolution and positive selection of bright-light vision genes in the common ancestor of <em>Macropus</em> (kangaroos, wallaroos, and wallabies). <em>Macropus</em>-specific amino acid substitutionsin opsin genes (<em>LWS</em> and <em>SWS1</em>), in particular, may be an adaptation for crepuscular vision in this genus via opsin spectral sensitivity tuning. Our study set the stage for functional genetics studies and provides a stepping-stone to future research efforts that fully capture the visual repertoire of marsupials.
DOI: 10.6084/m9.figshare.20357475.v1
title: 108_vision_related_genes.zip

description: 101 functional genes and 7 pseudogenes in vision pathway were used in the study.
DOI: 10.25592/uhhfdm.10340
title: Supplementary Materials- Model-based Yield gap assessment in Nepal's diverse agricul-ture landscape

description: A table with the district-wise simulated current and attainable yields, yields simulated with additional water and irrigation applications, yield gaps, nitrogen, phosphorous and irrigation requirements, agricultural area and total attainable yields per district in Nepal.
DOI: 10.17028/rd.lboro.20214002
title: Computational Research Data for: "Impact of Varying the Phenylboronic Acid Position in Macrocyclic Eu(III) Complexes on the Recognition of Adenosine Monophosphate"

description: Computational Research Data underlying the manuscript: "Impact of Varying the Phenylboronic Acid Position in Macrocyclic Eu(III) Complexes on the Recognition of Adenosine Monophosphate" by Samantha E. Bodman, Colum Breen, Felix Plasser, and Stephen J Butler. Content (names of folders and files are given in <strong>bold face</strong>) Computations were performed on EupBOH2, EumBOH2, and EuoBOH2 as defined in the text. Each folder contains computations on a specific complex: <strong>Eu*_water</strong> - one bound water molecule <strong>Eu*_Pi</strong> - inorganic phosphate bound <strong>Eu*AMP-H</strong> - AMP bound <strong>Eu*B_AMP-H_OH</strong> - cyclic structure <strong>EuoBOH3_closed</strong> - closed structure of EuoBOH2 with extra OH<sup>-</sup> group Each folder contains <strong>final.xyz</strong> - converged geometry <strong>qchem.[in/out]</strong> - Q-Chem input/output files for optimisation <strong>Freq/qchem.[in/out]</strong> - Q-Chem input/output files for vibrational frequencies <strong>SMD/qchem.[in/out]</strong> - Q-Chem input/output files for solvation <strong>BSSE/qchem.[in/out]</strong> - Q-Chem input/output files for BSSE correction For <strong>EupBOH2_Pi</strong> and <strong>EupBOH2_water</strong> there is also a folder <strong>Emission</strong> describing the CASSCF computations: <strong>MOLCAS.input</strong> - input file to OpenMolcas <strong>molcas.log</strong> - output file from OpenMolcas <strong>MOLCAS.RasOrb</strong> - converged orbitals
DOI: 10.17028/rd.lboro.20214002.v1
title: Computational Research Data for: "Impact of Varying the Phenylboronic Acid Position in Macrocyclic Eu(III) Complexes on the Recognition of Adenosine Monophosphate"

description: Computational Research Data underlying the manuscript: "Impact of Varying the Phenylboronic Acid Position in Macrocyclic Eu(III) Complexes on the Recognition of Adenosine Monophosphate" by Samantha E. Bodman, Colum Breen, Felix Plasser, and Stephen J Butler. Content (names of folders and files are given in <strong>bold face</strong>) Computations were performed on EupBOH2, EumBOH2, and EuoBOH2 as defined in the text. Each folder contains computations on a specific complex: <strong>Eu*_water</strong> - one bound water molecule <strong>Eu*_Pi</strong> - inorganic phosphate bound <strong>Eu*AMP-H</strong> - AMP bound <strong>Eu*B_AMP-H_OH</strong> - cyclic structure <strong>EuoBOH3_closed</strong> - closed structure of EuoBOH2 with extra OH<sup>-</sup> group Each folder contains <strong>final.xyz</strong> - converged geometry <strong>qchem.[in/out]</strong> - Q-Chem input/output files for optimisation <strong>Freq/qchem.[in/out]</strong> - Q-Chem input/output files for vibrational frequencies <strong>SMD/qchem.[in/out]</strong> - Q-Chem input/output files for solvation <strong>BSSE/qchem.[in/out]</strong> - Q-Chem input/output files for BSSE correction For <strong>EupBOH2_Pi</strong> and <strong>EupBOH2_water</strong> there is also a folder <strong>Emission</strong> describing the CASSCF computations: <strong>MOLCAS.input</strong> - input file to OpenMolcas <strong>molcas.log</strong> - output file from OpenMolcas <strong>MOLCAS.RasOrb</strong> - converged orbitals
DOI: 10.5281/zenodo.6881353
title: Control samples for ITS1 Metabarcoding of the Cynomolgus Macaque Intestinal Mycobiome

description: Library and Sequencing controls used for the Metabarcoding ITS1 analysis of intestinal content of the Cynomolgus Macaque
DOI: 10.5281/zenodo.6881352
title: Control samples for ITS1 Metabarcoding of the Cynomolgus Macaque Intestinal Mycobiome

description: Library and Sequencing controls used for the Metabarcoding ITS1 analysis of intestinal content of the Cynomolgus Macaque
DOI: 10.6084/m9.figshare.20357589
title: Effects of White versus Coloured.xlsx

description: Lighting is one of the important factors affecting the emotion of people in architecture, and the study of the psychological needs of architectural lighting may provide more rational guidelines for architectural design. There are many previous studies on the emotion of lighting in architecture, but most of them use the method of measured absolute emotional values, lacking consideration of the dynamics of emotions. In this study, we assess the relative emotional effects of coloured light on participants by comparing their emotional responses to white and coloured light. Participants (n = 32) were divided into three groups and subjected to three scenes with different colour combinations. Participants self-reported emotional values (in terms of pleasure, arousal, dominance, and comfort) after being exposed to light. The results of the emotion data analysis showed that the emotion of participants was significantly negatively affected from white to coloured light, especially for the male subgroup. No effect on comfort was observed between white and coloured light. Our study shows that using relative emotion assessment methods in real environments with only highly saturated coloured lighting does not improve negative mood in waiting spaces.
DOI: 10.6084/m9.figshare.20357589.v2
title: Effects of White versus Coloured.xlsx

description: Lighting is one of the important factors affecting the emotion of people in architecture, and the study of the psychological needs of architectural lighting may provide more rational guidelines for architectural design. There are many previous studies on the emotion of lighting in architecture, but most of them use the method of measured absolute emotional values, lacking consideration of the dynamics of emotions. In this study, we assess the relative emotional effects of coloured light on participants by comparing their emotional responses to white and coloured light. Participants (n = 32) were divided into three groups and subjected to three scenes with different colour combinations. Participants self-reported emotional values (in terms of pleasure, arousal, dominance, and comfort) after being exposed to light. The results of the emotion data analysis showed that the emotion of participants was significantly negatively affected from white to coloured light, especially for the male subgroup. No effect on comfort was observed between white and coloured light. Our study shows that using relative emotion assessment methods in real environments with only highly saturated coloured lighting does not improve negative mood in waiting spaces.
DOI: 10.6084/m9.figshare.20357589.v1
title: Effects of White versus Coloured.xlsx

description: Lighting is one of the important factors affecting the emotion of people in architecture, and the study of the psychological needs of architectural lighting may provide more rational guidelines for architectural design. There are many previous studies on the emotion of lighting in architecture, but most of them use the method of measured absolute emotional values, lacking consideration of the dynamics of emotions. In this study, we assess the relative emotional effects of coloured light on participants by comparing their emotional responses to white and coloured light. Participants (n = 32) were divided into three groups and subjected to three scenes with different colour combinations. Participants self-reported emotional values (in terms of pleasure, arousal, dominance, and comfort) after being exposed to light. The results of the emotion data analysis showed that the emotion of participants was significantly negatively affected from white to coloured light, especially for the male subgroup. No effect on comfort was observed between white and coloured light. Our study shows that using relative emotion assessment methods in real environments with only highly saturated coloured lighting does not improve negative mood in waiting spaces.
DOI: 10.18112/openneuro.ds002608.v1.0.2
title: RPN-signature_Study1
DOI: 10.34740/kaggle/dsv/3972733
title: AQI - Air Quality Index
DOI: 10.6084/m9.figshare.20357793
title: State of the Art and Future Directions of HR Analytics Literature

description: The dataset contain the papers used for the analysis shown in the paper "<em>State of the Art and Future Directions of HR Analytics Literature: A Scoping Review Based on Natural Language Processing Technique."</em>