cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15784/601471
title: Erebus GPS timeseries

description: We use NASA's Jet Propulsion Laboratory's (JPL) GipsyX software in PPP mode with ambiguity resolution applied to 24 hour segments of data to generate daily position solutions. We use JPL's orbit and clock products and International GNSS Service (IGS) antenna phase center models. Where available, we use JPL's second order ionospheric corrections, otherwise we fall back on those provided by the IGS. To correct tropospheric delays, we use the GPT2 model as implemented in GipsyX. Ocean tidal loading corrections utilize the TPXO7.2 and ATLAS model, a combination of hydrodynamic model and altimetry data, with respect to Earth's Center of Mass implemented in SPOTL. We obtain position solutions for each station day in a fiducial-free reference frame, which we then transform into the 2014 International Reference Frame using JPL's transformation coefficients and generate timeseries of position change relative to the first epoch, given in the *.series files which are ASCII files with the following columns: decimal year displacement east (m) displacement north (m) displacement up (m) sigma east (m) sigma north (m) sigma up (m) east-north covariance east-up covariance north-up covariance Year (YYYY) Month (MM) Day (DD) Hour (hh) Minute (mm) Second (ss) Solution path We generate position time series relative to stable Antarctic plate by removing the plate velocities modeled by Argus et al (2010). These are provided in the *.npy files that be readily read into python scripts: pos_ts = np.load('test.npy').flatten()[0] pos_ts['itrf'] provides the ITRF data as above pos_ts['plate'] provides the data with Antarctic plate motion removed.
DOI: 10.6084/m9.figshare.15129057
title: Antibacterial activity of EO against Bacillus subtilis

description: Activity of 24 essential oils against the growth of <i>B. subtilis by </i> disk diffusion method.Inhibition <i>B. subtilis</i> growth at nutrient broth medium in the presence of different concentrations of 10 essential oils.<br> Binary interaction studies of essential oils by agar disk diffusion method.<br>
DOI: 10.6084/m9.figshare.15129057.v2
title: Antibacterial activity of EO against Bacillus subtilis

description: Activity of 24 essential oils against the growth of <i>B. subtilis by </i> disk diffusion method.Inhibition <i>B. subtilis</i> growth at nutrient broth medium in the presence of different concentrations of 10 essential oils.<br> Binary interaction studies of essential oils by agar disk diffusion method.<br>
DOI: 10.6084/m9.figshare.15129057.v1
title: Antibacterial activity of EO against Bacillus subtilis

description: Activity of 24 essential oils against the growth of <i>B. subtilis by </i> disk diffusion method.Inhibition <i>B. subtilis</i> growth at nutrient broth medium in the presence of different concentrations of 10 essential oils.<br> Binary interaction studies of essential oils by agar disk diffusion method.<br>
DOI: 10.5281/zenodo.5395178
title: The effects of cholesterol accumulation on Achilles tendon biomechanics: A cross-sectional study DATASET

description: Data set for "The effects of cholesterol accumulation on Achilles tendon biomechanics: A cross-sectional study"
DOI: 10.6084/m9.figshare.14330552
title: Pold et al. Arctic warming meta-analysis

description: Supplementary materials including code and data for meta-analysis of experimental warming effects on arctic biogeochemistry.<br>
DOI: 10.6084/m9.figshare.14330552.v1
title: Pold et al. Arctic warming meta-analysis

description: Supplementary materials including code and data for meta-analysis of experimental warming effects on arctic biogeochemistry.<br>
DOI: 10.5281/zenodo.5423276
title: Marine Heatwave Prediction

description: These datasets will be used in the 3rd NOAA AI Workshop on Leveraging AI in Environmental Sciences Hackathon for marine heatwave prediction occurring Tuesday–Friday, September 7–10. The goals of this hackathon are to develop innovative ways to understand the relationships between air-sea interactions and the presence/absence of marine heatwave events using historical climatology data.
DOI: 10.5281/zenodo.5423275
title: Marine Heatwave Prediction

description: These datasets will be used in the 3rd NOAA AI Workshop on Leveraging AI in Environmental Sciences Hackathon for marine heatwave prediction occurring Tuesday–Friday, September 7–10. The goals of this hackathon are to develop innovative ways to understand the relationships between air-sea interactions and the presence/absence of marine heatwave events using historical climatology data.
DOI: 10.7303/syn26064655.1
title: Project View
DOI: 10.25810/kzc1-k256
title: FIRED CHILE

description: This is event- and daily-level polygons for the Fire event delineation (FIRED) product for Chile from November 2001 to March 2021. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v006/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (www.github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixel and 5 days. The primary benefit to this dataset over others is the ability to calculate fire spread rate. For each of these products (events and daily) the event identification numbers are the same, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event.
DOI: 10.5281/zenodo.5424761
title: The effects of cholesterol accumulation on Achilles tendon biomechanics: A cross-sectional study DATASET

description: Data set for "The effects of cholesterol accumulation on Achilles tendon biomechanics: A cross-sectional study"
DOI: 10.5281/zenodo.5395177
title: The effects of cholesterol accumulation on Achilles tendon biomechanics: A cross-sectional study DATASET

description: Data set for "The effects of cholesterol accumulation on Achilles tendon biomechanics: A cross-sectional study"
DOI: 10.25921/a8db-v707
title: BP Public Release data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-05-01 to 2013-09-30
DOI: 10.5281/zenodo.5417694
title: Amblyopsis hoosieri MLN_0242 decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5417693
title: Amblyopsis hoosieri MLN_0242 decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5422728
title: Maricopa County, AZ interpolated daily precipitation rasters

description: This dataset contains daily layers of precipitation data from weather stations in Maricopa County, Arizona, USA, from October 2012 - September 2017. The layers contain raw measurements as well as spatial interpolation between weather stations done by kriging. Elevation was used as a covariate for the kriging algorithm. The data are presented in a zip file. When unzipped, the data layers will be larger than 9 GB.
description: Associated with a forthcoming publication; this field will be updated once more information is available.
DOI: 10.25921/wee1-av52
title: Chemistry data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-04-28 to 2015-09-11
DOI: 10.25921/djfz-px37
title: Deepwater Horizon (DWH) Response data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-04-21 to 2011-09-25
DOI: 10.25921/bamj-jz13
title: Other Tasking Agency data for the Deepwater Horizon Response and Assessment in the Gulf of Mexico, dating from 2010-04-28 to 2012-04-11
DOI: 10.6084/m9.figshare.15072024.v1
title: Example of Neutrophil Isolation Purity

description: This is an example of a purity check done on isolated neutrophils from 4-month-old C57Bl/6J mice. Neutrophil markers Ly6G and Cd11b were used. Neutrophil samples were analyzed using the MacsQuant10 ang gating was performed using FlowLogic version 8.
DOI: 10.5281/zenodo.5348221
title: Effect of the Quasi-Biennial Oscillation on the Madden Julian Oscillation teleconnections in the Southern Hemisphere

description: Perturbation experiments described on the manuscript "Effect of the Quasi-Biennial Oscillation on the Madden Julian Oscillation teleconnections in the Southern Hemisphere"
DOI: 10.5281/zenodo.5348220
title: Effect of the Quasi-Biennial Oscillation on the Madden Julian Oscillation teleconnections in the Southern Hemisphere

description: Perturbation experiments described on the manuscript "Effect of the Quasi-Biennial Oscillation on the Madden Julian Oscillation teleconnections in the Southern Hemisphere"
DOI: 10.25573/data.14588262
title: Dataset: "Mixing Chemistry and Pigments: X-ray Fluorescence Spectroscopy as a Nondestructive Technique for Analysis of Pigments in a Painted Japanese Handscroll" ; F1907.375a, XRF 2018

description: Scanning x-ray fluorescence data and relevant photodocumentation images of a Japanese handscroll, The Miraculous Interventions of the Jizō Bosatsu (Freer Gallery of Art, Smithsonian Institution, Washington, DC: Gift of Charles Lang Freer, F1907.375a). Scans were performed in 2018 with a Bruker Tracer 5g handheld XRF. The XRF data provided includes x and y position and the fitted element intensities for relevant XRF peaks. Any negative intensity values have been replaced by a zero value. The scanner x,y are rotated compared to the image; transforming the data may be necessary for proper orientation (rotate 90 deg). The scanner x position has been shifted to account for scanner travel direction. Data location is described as the handscroll scene (S##), a sequential letter for the scan area within the scene (e.g., A = 1), with a descriptor (e.g., woman).<br>Only select scenes from the larger study are provided for use to accompany the publication: "Mixing Chemistry and Pigments: X-ray Fluorescence Spectroscopy as a Nondestructive Technique for Analysis of Pigments in a Painted Japanese Handscroll" by Kathryn L. Rowberg, Grethe Hystad, Matthew L. Clarke, Jazmin Gonzalez, and Johnathon M. Taylor in “Contextualizing Chemistry in Art & Archaeology: Inspiration for Faculty” Editors: Kevin Braun and Kristin Labby. American Chemical Society, 2021, pp 217-231, <b>DOI: </b>10.1021/bk-2021-1386.ch010<br>Details about the data collection may be found in:Clarke, M.L., Gabrieli, F., Rowberg, K.L. et al. Imaging spectroscopies to characterize a 13th century Japanese handscroll, The Miraculous Interventions of Jizō Bosatsu. Herit Sci 9, 20 (2021). <br>https://doi.org/10.1186/s40494-021-00497-1<br><br>Image credit: Freer Gallery of Art, Smithsonian Institution, Washington, DC: Gift of Charles Lang Freer, F1907.375a (detail) / Department of Conservation and Scientific Research, Photograph by Jiro Ueda)
DOI: 10.6084/m9.figshare.14699736
title: NETosis good example

description: This is an example of a successful NETosis assay. In this experiment we were comparing male and female, 5-months-old C57BL/6 mice.
DOI: 10.7303/syn26064655
title: Project Viewa
DOI: 10.6084/m9.figshare.16569243.v1
title: EasySep vs Miltenyi Biotec Neutrophil Isolation Kit NETosis

description: We tested the differences in NETosis induction when isolating neutrophils either with the StemCell EasySep Neutrophil Enrichment kit or the Miltenyi Biotec Neutrophil Isolation Kit.
DOI: 10.6084/m9.figshare.16569243
title: EasySep vs Miltenyi Biotec Neutrophil Isolation Kit NETosis

description: We tested the differences in NETosis induction when isolating neutrophils either with the StemCell EasySep Neutrophil Enrichment kit or the Miltenyi Biotec Neutrophil Isolation Kit.
DOI: 10.6073/pasta/4de59d4a3e7e4d81ed4398720f02202b
title: Raczka et al Arbuscular mycorrhizal and ectomycorrhizal trees have divergent responses of belowground carbon investment to water stress data

description: Data from the Tom's Run drought experiment located in Morgantown, West Virginia, USA. The experiment was run from 2017 to 2019. This data contains samples collected each growing season while the drought treatment was running. This includes the soil moisture taken year round, root biomass from each plot, root mycorrhizal colonization and data from root ingrowth cores. This data package is completed.
DOI: 10.6084/m9.figshare.7966637
title: Raw Data c-Abl deficiency provides synaptic resiliency against Abeta oligomers.xlsx

description: This dataset contains raw data analyzed for figures 1 to 5, and the supplementary figure 4, of the paper entitled "c-Abl deficiency provides synaptic resiliency against Abeta oligomers". Each Excel sheet contains the data for each figure, including the number of experiments and animals analyzed.
DOI: 10.6084/m9.figshare.7966637.v1
title: Raw Data c-Abl deficiency provides synaptic resiliency against Abeta oligomers.xlsx

description: This dataset contains raw data analyzed for figures 1 to 5, and the supplementary figure 4, of the paper entitled "c-Abl deficiency provides synaptic resiliency against Abeta oligomers". Each Excel sheet contains the data for each figure, including the number of experiments and animals analyzed.
DOI: 10.17632/yd94nj6kpw.1
title: LINF_180005000

description: kinetoplast polyadenylation/uridylation factor 1 (KPAF1)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/pbs6vb86vb.2
title: 2mm Code

description: Source Code of 2mm.
DOI: 10.5281/zenodo.5425443
title: Freesurfer Dataset

description: This is simulated data created for test and demonstration purposes for decentralized algorithms for COINSTAC. There is a CSV file with the two columns of demographic data and a column of filenames containing the volumes of the regions of interest (ROIs) of the subjects' brains. These volumes are typically produced by segmentation using <code>recon-all</code> in the FreeSurfer program. Data dictionary freesurferfile: filename associated with subject containing volumes of ROIs, as typically produced by FreeSurfer segmentation age (float): subject's age isControl (Boolean): whether subject was a control (True) or had a medical condition (False) There are a total of 72 subjects. The volumes were simulated with equations of the following form: y = B0 + B1 x age + B2 x isControl + B3 x e where e ~ N(0,1) Each volume was given a fixed intercept (B0) (e.g., 48466.3 for Right-Cerebellum-Cortex). The effect of age (B1) was selected randomly from the range [-300, -100], and the effect of diagnosis (isControl, B2) was selected randomly from the range [500, 1000] for each pseudo subject. A standard unit Gaussian noise multiplied by a random index from the range [1800, 2200] was added subsequently. This data was created on Feb 2, 2017 by Jing Ming at the Mind Research Network and presented in this paper: Ming J, Verner E, Sarwate A et al. COINSTAC: Decentralizing the future of brain imaging analysis [version 1; peer review: 2 approved]. F1000Research 2017, 6:1512 (https://doi.org/10.12688/f1000research.12353.1)
DOI: 10.5281/zenodo.5425442
title: Freesurfer Dataset

description: This is simulated data created for test and demonstration purposes for decentralized algorithms for COINSTAC. There is a CSV file with the two columns of demographic data and a column of filenames containing the volumes of the regions of interest (ROIs) of the subjects' brains. These volumes are typically produced by segmentation using <code>recon-all</code> in the FreeSurfer program. Data dictionary freesurferfile: filename associated with subject containing volumes of ROIs, as typically produced by FreeSurfer segmentation age (float): subject's age isControl (Boolean): whether subject was a control (True) or had a medical condition (False) There are a total of 72 subjects. The volumes were simulated with equations of the following form: y = B0 + B1 x age + B2 x isControl + B3 x e where e ~ N(0,1) Each volume was given a fixed intercept (B0) (e.g., 48466.3 for Right-Cerebellum-Cortex). The effect of age (B1) was selected randomly from the range [-300, -100], and the effect of diagnosis (isControl, B2) was selected randomly from the range [500, 1000] for each pseudo subject. A standard unit Gaussian noise multiplied by a random index from the range [1800, 2200] was added subsequently. This data was created on Feb 2, 2017 by Jing Ming at the Mind Research Network and presented in this paper: Ming J, Verner E, Sarwate A et al. COINSTAC: Decentralizing the future of brain imaging analysis [version 1; peer review: 2 approved]. F1000Research 2017, 6:1512 (https://doi.org/10.12688/f1000research.12353.1)
DOI: 10.25345/c5q548
title: MassIVE MSV000088055 - In vitro Src-mediated tyrosine Phosphorylation of ALIX
title: Human ALIX (Uniprot accession no. Q8WUM4) Bro1 and proline-rich domains were recombinantly expressed, purified, and phosphorylated in vitro by tyrosine kinase Src. Phosphorylation products were analyzed by mass spectrometry.
DOI: 10.15139/s3/5obchl
title: FAFC Niger Segmentation Study In-Depth Interview Guides

description: Data collected by the Carolina Population Center’s Full Access Full Choice Project and Initiative OASIS Niger in 2020. In-depth interviews were conducted with 24 family planning providers to examine their family planning counseling practices and experiences with the segmentation counseling tool at integrated health centers in Dosso region, Niger.
DOI: 10.5066/p9ooo2r3
title: Estimated low-flow statistics at ungaged stream locations in New Jersey, water year 2020

description: Estimates of various low-flow statistics were computed at 32 ungaged stream locations throughout New Jersey during the 2020 water year using methods in the published reports, 1) Streamflow characteristics and trends in New Jersey, water years 1897-2003 (Watson and others, 2005) and 2) Implementation of MOVE.1, censored MOVE.1, and piecewise MOVE.1 low-flow regressions with applications at partial-record streamgaging stations in New Jersey (Colarullo and others, 2018). The estimates are computed as needed for use in water resources permitting, assessment, and management by the New Jersey Department of Environmental Protection. The data release includes the stream name, location, method of estimation, drainage area, and intended use of the low-flow statistics computed during the 2020 water year. The data are provided as both a plain text file and ArcGIS shapefile format. References for publications cited: Watson, K.M., Reiser, R.G., Nieswand, S.P., and Schopp, R.D., 2005, Streamflow characteristics and trends in New Jersey, water years 1897-2003: U.S. Geological Survey Scientific Investigations Report 2005-5105, 131 p., https://doi.org/10.3133/sir20055105. Colarullo, S.J., Sullivan, S.L., and McHugh, A.R., 2018, Implementation of MOVE.1, censored MOVE.1, and piecewise MOVE.1 low-flow regressions with applications at partial-record streamgaging stations in New Jersey: U.S. Geological Survey Open-File Report 2018-1089, 20 p., https://doi.org/10.3133/ofr20181089.
DOI: 10.25345/c5kc2b
title: MassIVE MSV000088056 - Microcystis cobalamin chemotyping
title: Cobalamin chemotyping in cultures of Microcystis aeruginosa PCC7806 and PCC9806
DOI: 10.25345/c5fn9h
title: MassIVE MSV000088057 - In vitro tyrosine phosphorylation of ALIX
title: Human ALIX (Uniprot accession no. Q8WUM4) Bro1 and proline-rich domains were recombinantly expressed, purified, and phosphorylated in vitro by tyrosine kinase Src. Phosphorylation products were analyzed by mass spectrometry.
DOI: 10.25345/c59v66
title: MassIVE MSV000088058 - GNPS - Microcystis cobalamin chemotyping
title: Cobalamin chemotyping in cultures of Microcystis aeruginosa PCC7806 and PCC9806
DOI: 10.25919/ef93-tw48
title: Parkes observations for project P574 semester 2021APRS_08

description: We request time to observe 260 pulsars regularly in order to provide the accurate ephemerides necessary for the detection and characterisation of gamma-ray pulsars with the Fermi satellite. The main science goals are to increase the number of known gamma-ray pulsars (both radio-loud and radio-quiet), to determine accurate pulse profiles, and to characterise their high energy (phase-resolved) spectra. In the radio, the observations will also allow us to investigate: neutron stars and pulsar emission via detecting glitches and determining pulse timing parameters; and the ISM via measuring and monitoring dispersion measures, Faraday rotation measures, and scintillation. To date, we are (co-)authors on over 90 papers arising from the collaboration and P574 data, including three which use UWL observations. The data have contributed to the PhD theses of students from Bordeaux, Manchester, Oxford, Stanford, and Swinburne.
DOI: 10.25919/90r9-pz16
title: Parkes observations for project P1032 semester 2021APRS_14

description: This project aims to continue to perform rapid measurements of relativistic parameters of southern binary pulsar systems using data from the Parkes Ultra Wideband Low (UWL) receiver and the MeerKAT telescope thereby enabling measurement of their component masses and in some cases, test theories of gravity. We will use the UWL data to obtain significant orbital coverage and timing baseline on these pulsars and obtain important constraints on orbital and temporal DM variations that will help in identifying the nature of the companion star. We will then use MeerKAT data at crucial orbital phases to improve our chances of measuring the relativistic parameters. Increase in the number of measured NS masses has profound implications for NS internal structure and for stellar and binary evolution physics. From this semester, we are converting this proposal into a ``Large project" proposal.
DOI: 10.25919/ym87-6289
title: Parkes observations for project P1021 semester 2021APRS_20

description: We propose to continue our observations of PSR J1653-45, a 951-ms pulsar in a long, 1.5-yr orbit, which experiences apparent eclipses whose nature have yet to be fully understood. Binary pulsars are valuable objects of scientific study, allowing for multiple applications including tests of gravity, probes of the neutron star equation of state, and fossil records of stellar evolution. Long spin-period pulsars in binary systems are generally much rarer than faster-spinning `recycled’ pulsars, and represent an under-explored region of pulsar binary evolution. Based upon previous Parkes and ATCA proposals, our understanding of this pulsar has significantly increased. We have detected the pulsar in previously unexplored regions of its orbit, localised its position, and have constrained the start of the eclipse, such that a targeted campaign in the 2021APRS semester (during which the next eclipse is expected) will provide the breakthrough needed to solve and understand this pulsar. We therefore propose a high-cadence campaign with observations at least 1.4 times more sensitive than any previously recorded with Parkes during the eclipse. These observations will constrain the end of the eclipse and ensure that we detect the pulsar as early and often as possible, leading to a phase connected timing solution which will unlock the pulsar’s scientific potential. Through this, we hope to gain a greater understanding of this pulsar’s properties (as well as those of its companion) and how it fits into this under-explored class of unrecycled pulsar binaries.
DOI: 10.25919/5k19-xj06
title: Parkes observations for project P1101 semester 2021APRS_09

description: We propose to carry out fortnightly monitoring of a very active repeater, FRB~190520, with the Parkes UWL system. Our current observations show that FRB~190520 is not only the most active FRB that can be observed with Parkes, but also shows unique behaviour at 2 to 3 GHz frequency. This makes UWL the ideal instrument to carry out in-depth studies of this repeating FRB. With this program, we expect to detect a large sample of bursts from FRB~190520, and in collaboration with the FAST telescope we will search for potential periodicity and study emission properties over an extremely wide bandwidth with high sensitivity.