cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26577155.v1
title: Additional file 17 of In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea

description: Additional file 17: Archaeal species non covered by the selected archaea-specific primer pairs.
DOI: 10.6084/m9.figshare.26577152
title: Additional file 16 of In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea

description: Additional file 16: Bacterial species non covered by the selected bacteria-specific primer pairs.
DOI: 10.6084/m9.figshare.26713649
title: Additional file 3 of Economic evaluations of medical devices in paediatrics: a systematic review and a quality appraisal of the literature

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26713649.v1
title: Additional file 3 of Economic evaluations of medical devices in paediatrics: a systematic review and a quality appraisal of the literature

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26713658
title: Additional file 6 of Economic evaluations of medical devices in paediatrics: a systematic review and a quality appraisal of the literature

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26713658.v1
title: Additional file 6 of Economic evaluations of medical devices in paediatrics: a systematic review and a quality appraisal of the literature

description: Supplementary Material 6
DOI: 10.15468/dl.kxdv25
title: Occurrence Download

description: A dataset containing 658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Indonesia",
 "DatasetKey is one of (iNaturalist Research-grade Observations, EOD – eBird Observation Dataset, Xeno-canto - Bird sounds from around the world)",
 "Geometry POLYGON((94.40196 6.32177,94.33857 3.03661,103.65781 -7.0243,106.77046 -5.63112,107.208 -2.03324,102.75748 1.71667,99.53706 4.93381,94.40196 6.32177))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "PublishingOrg is one of (e2e717bf-551a-4917-bdc9-4fa0f342c530, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 1f00d75c-f6fc-4224-a595-975e82d7689c)",
 "TaxonKey is Aegithina tiphia (Linnaeus, 1758)",
 "Year 1980-2024"
 ]
}

 The dataset includes 658 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068042-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26713661.v1
title: Additional file 1 of Integrative genomic and transcriptomic analysis of Xanthomonas oryzae pv. oryzae pathotype IV, V, and IX in China reveals rice defense-responsive genes

description: Additional file 1: Table S1. Disease response of different rice cultivars to Xoo strains GD0201, GD1358, and GD0202. Table S2. Disease phenotype of 206 rice cultivars inoculated with GD1358 and GD0202. Table S3. Sequencing and assembly information of three Xoo genomes and predicted protein percentage against various protein databases. Table S4. ANI analysis between strains GD0201, GD1358, GD0202, and other Xanthomonas strains. Table S5. Non-TAL effector coding genes in various Xoo strains. Table S6. RVDs of TAL effectors in GD0201. Table S7. RVDs of TAL effectors in GD1358. Table S8. RVDs of TAL effectors in GD0202. Table S9. Classification of TAL effectors in different Xoo strains according to RVDs. Table S10. List of 14 hub genes. Table S11. Primers used in the RT-qPCR analyses.
DOI: 10.6084/m9.figshare.26713661
title: Additional file 1 of Integrative genomic and transcriptomic analysis of Xanthomonas oryzae pv. oryzae pathotype IV, V, and IX in China reveals rice defense-responsive genes

description: Additional file 1: Table S1. Disease response of different rice cultivars to Xoo strains GD0201, GD1358, and GD0202. Table S2. Disease phenotype of 206 rice cultivars inoculated with GD1358 and GD0202. Table S3. Sequencing and assembly information of three Xoo genomes and predicted protein percentage against various protein databases. Table S4. ANI analysis between strains GD0201, GD1358, GD0202, and other Xanthomonas strains. Table S5. Non-TAL effector coding genes in various Xoo strains. Table S6. RVDs of TAL effectors in GD0201. Table S7. RVDs of TAL effectors in GD1358. Table S8. RVDs of TAL effectors in GD0202. Table S9. Classification of TAL effectors in different Xoo strains according to RVDs. Table S10. List of 14 hub genes. Table S11. Primers used in the RT-qPCR analyses.
DOI: 10.6084/m9.figshare.26577218
title: Additional file 1 of GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

description: Additional file 1: Table S1. List of parsable monomers.
DOI: 10.6084/m9.figshare.26577221.v1
title: Additional file 2 of GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

description: Additional file 2: Table S2. List of parsable modifications.
DOI: 10.6084/m9.figshare.26713690
title: Additional file 1 of Higher peripheral blood mitochondrial DNA copy number and relative telomere length in under 48 years Indonesian breast cancer patients

description: Additional file 1. Figure S1. Flow diagram of the healthy subjects and breast cancer (BC) patients' enrolment Table S1. Comparison of mtDNA-CN and RTL between extraction methods Table S2. List of primer pairs Table S3. Characteristics of study participants Figure S2. Univariate comparison of peripheral blood mtDNA-CN and RTL between healthy subjects and breast cancer patients Figure S3. Univariate comparison of peripheral blood mtDNA-CN and RTL between under and above 48 years subgroup in healthy subjects and breast cancer patients.
DOI: 10.6084/m9.figshare.26713690.v1
title: Additional file 1 of Higher peripheral blood mitochondrial DNA copy number and relative telomere length in under 48 years Indonesian breast cancer patients

description: Additional file 1. Figure S1. Flow diagram of the healthy subjects and breast cancer (BC) patients' enrolment Table S1. Comparison of mtDNA-CN and RTL between extraction methods Table S2. List of primer pairs Table S3. Characteristics of study participants Figure S2. Univariate comparison of peripheral blood mtDNA-CN and RTL between healthy subjects and breast cancer patients Figure S3. Univariate comparison of peripheral blood mtDNA-CN and RTL between under and above 48 years subgroup in healthy subjects and breast cancer patients.
DOI: 10.15468/dl.pfb389
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.973622 -32.998057, 148.973622 -33.004794, 148.980359 -33.004794, 148.980359 -32.998057, 148.973622 -32.998057))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068043-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26713696
title: Additional file 2 of Unveiling the impact of cryptic plasmids curing on Escherichia coli Nissle 1917: massive increase in Ag43c expression

description: Additional file 2: Table S1. Primers used for PCR in the study. Table S2. Primers used for qPCR in the study. Table S3. Escherichia coli strain SSGNw1 chromosome, complete genome. Table S4. Proteins identified by mass spectrometry. Table S5. Proteins identified by mass spectrometry (repeated).
DOI: 10.6084/m9.figshare.26713696.v1
title: Additional file 2 of Unveiling the impact of cryptic plasmids curing on Escherichia coli Nissle 1917: massive increase in Ag43c expression

description: Additional file 2: Table S1. Primers used for PCR in the study. Table S2. Primers used for qPCR in the study. Table S3. Escherichia coli strain SSGNw1 chromosome, complete genome. Table S4. Proteins identified by mass spectrometry. Table S5. Proteins identified by mass spectrometry (repeated).
DOI: 10.6084/m9.figshare.26713705
title: Additional file 1 of Comparison of knowledge, awareness, and behaviors toward oral cancer among dental students and dentists: an online cross-sectional questionnaire in Türkiye

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26713705.v1
title: Additional file 1 of Comparison of knowledge, awareness, and behaviors toward oral cancer among dental students and dentists: an online cross-sectional questionnaire in Türkiye

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26713714
title: Additional file 2 of Subregion preference in the long-range connectome of pyramidal neurons in the medial prefrontal cortex

description: Additional file 2. Fezf2 and Plxnd1 input and output raw data.
DOI: 10.6084/m9.figshare.25711189
title: Additional file 1 of Unveiling the ventral morphology of a rare early Cambrian great appendage arthropod from the Chengjiang biota of China

description: Additional file 1: Fig. S1. Drishti renderings of the two Tanglangia longicaudata holotype parts. A Hz-f-7-228, part. B Hz-f-7-229, counterpart. Fig. S2. Drishti renderings of the “outer”, dorsal side of three Tanglangia longicaudata specimens. A YKLP 17219. B YKLP 17217. C YKLP 17218. Fig. S3. Drishti renderings of Tanglangia longicaudata specimen YKLP 17217 in ventro-laterally compressed orientation showing details of the triangular shaped, backward folded tergopleural spines (taphonomically biased). A, C, E Drishti rendering with activated shadow renderer. B, D, F Drishti rendering without activated shadow renderer. A, B anterior oblique view. C, D anterior oblique view, specimen inclined. E, F posterior oblique view. Not to scale.
DOI: 10.26036/cnp0007571
title: key gut microbiota-metabolites associated with severity in metabolic dysfunction-associated fatty liver disease-Metabolic

description: Abstract: The incidence of metabolic-associated fatty liver disease (MAFLD) is increasing and is an increasingly common cause of cirrhosis and hepatocellular carcinoma. Alterations in gut microbiota have been correlated with the incidence of MAFLD. However, limited information is available regarding the differences in the gut microbiome and metabolomics involved in MAFLD severity. In this study, 70 patients with MAFLD and 22 healthy volunteers were enrolled from Guangdong Province, China. The 16S rRNA gene sequencing and non-targeted metabolomic sequencing were used to evaluate the fecal microbiota and metabolites. The results showed six pivotal genera in the gut microbiota: g_Cloacibacillus, g_Synergistes, g_Pseudoramibacter_Eubacterium, g_Coprococcus, g_Lachnospira, and g_Blautia. In the subgroup analysis, we found that gut microbial diversity increased in the severe MAFLD cohorts. Three genera (g_Parabacteroides, g_Cloacibacillus, and g_Turicibacter) and 91 metabolites were found to be differentially expressed and associated with MAFLD severity. Correlation analysis showed that three gut microbiotas, 14 clinical indices, and 82 differentially expressed metabolites (DEMs) were clustered into an interactive network. Notably, g_Cloacibacillus, which was positively correlated with hepatic function, was linked to four DEMs; g_Turicibacter, which was positively correlated with hepatic function and lipid/glucose metabolism, was related to 13 DEMs. These DMEs were mainly enriched in thiamine metabolism, starch and sucrose metabolism, and the citrate cycle (TCA cycle). This study provides insights into the role of key microbiotas and metabolites in fatty liver disease pathogenesis, especially in the severity of metabolic dysfunction. keywords: Metabolic-associated fatty liver disease; gut microbiota, metabolites; glucose metabolism disorders
DOI: 10.15468/dl.ytvqns
title: Occurrence Download

description: A dataset containing 1850 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anaspis regimbarti Schilsky, 1895"
 ]
}

 The dataset includes 1850 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017806-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzgb7d
title: Occurrence Download

description: A dataset containing 9680 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anaspis frontalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 9680 records from 298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017808-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14173967
title: Anomalous Cognition, Dissociation, and Motor Automatism

description: The research that created this data is described in:



Palmer, J. (2017). Anomalous Cognition, Dissociation, and Motor Automatism. Journal of Parapsychology, 81(1), 46-62.


Eight files are included:



trials1.csv - Trial data

subjects1_2.csv - Subject Data

autom-codes.odt - Code book (subjects)

Raw data (SPSS).zip - Raw data (SPSS)

Convert SPSS to CSV.zip -Conversion script for transforming from SPSS to CSV format.

autom_interview_ec.odt - Post-task questionnaire - eyes-closed

autom_interview_quotes.odt - Post-task questionnaire - quotations

PIF_rev0411.odt  - Participant Information Form
DOI: 10.5281/zenodo.14173968
title: Anomalous Cognition, Dissociation, and Motor Automatism

description: The research that created this data is described in:



Palmer, J. (2017). Anomalous Cognition, Dissociation, and Motor Automatism. Journal of Parapsychology, 81(1), 46-62.


Eight files are included:



trials1.csv - Trial data

subjects1_2.csv - Subject Data

autom-codes.odt - Code book (subjects)

Raw data (SPSS).zip - Raw data (SPSS)

Convert SPSS to CSV.zip -Conversion script for transforming from SPSS to CSV format.

autom_interview_ec.odt - Post-task questionnaire - eyes-closed

autom_interview_quotes.odt - Post-task questionnaire - quotations

PIF_rev0411.odt  - Participant Information Form
DOI: 10.15468/dl.f9mhjy
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Platymantis pseudodorsalis Brown, Alcala & Diesmos, 1999",
 "Year 1950-2024"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017809-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27798405
title: Whole-genome sequencing of the <i>Streptomyces coelicolor bldA39</i> mutant (J1700) of reveals hundreds of previously unknown mutations.

description: <b>Abstract</b>We report the genome sequence of the <i>bldA39 </i>(J1700) mutant <i>Streptomyces coelicolor</i>, a historically important strain that is deficient in sporulation and antimicrobial production. The <i>S. coelicolor</i> J1700 strain was used extensively from the 1980s onwards to underpin important discoveries in development and antibiotic production in <i>Streptomyces.</i> The <i>bldA </i>gene encodes a leucyl transfer RNA (tRNA), required for the translation of the rare TTA codon found in ~2 % of genes<i> </i>in <i>Streptomyces. </i>The whole genome of <i>S. coelicolor</i> J1700 was obtained via Illumina sequencing and mapped to the of <i>S. coelicolor </i>M145 reference genome. Analysis of the genome sequence compared to <i>S. coelicolor</i> M145 identified the known <i>bldA39</i> mutation (T&gt;C) and revealed more than 300 further mutations, likely associated with the <i>S. coelicolor </i>J1501 genetic background the strain was created in, including the nature of the <i>hisA1 </i>and <i>uraA1</i> alleles used extensively in genetic mapping experiments and several mutations in natural product biosynthetic gene clusters. This work highlights the importance of whole genome sequencing of historically important strains.<br><b>Data Summary</b>This Whole Genome Sequencing project has been deposited in NCBI under the Bioproject PRJNA1186139. The WGS reads used can be accessed in the NCBI’s SRA under the accession number SAMN44744323.
DOI: 10.15468/dl.rbb6em
title: Occurrence Download

description: A dataset containing 607567 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-96.85383 39.00765,-96.35283 39.00765,-96.35283 39.36128,-96.85383 39.36128,-96.85383 39.00765))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 607567 records from 316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017800-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vpts2
title: Occurrence Download

description: A dataset containing 36382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "CoordinateUncertaintyInMeters is less than or equal to 500.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Sus scrofa Linnaeus, 1758",
 "Year 1924-2024"
 ]
}

 The dataset includes 36382 records from 585 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017811-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rd6xs4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Platymantis quezoni Brown, De Layola, Lorenzo, Diesmos & Diesmos, 2015",
 "Year 1950-2024"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017812-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kthhkc
title: Occurrence Download

description: A dataset containing 385105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is TRUE",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 385105 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017810-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6e2ay
title: Occurrence Download

description: A dataset containing 2370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Picoides scalaris (Wagler, 1829)"
 ]
}

 The dataset includes 2370 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017813-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv3ut7
title: Occurrence Download

description: A dataset containing 101233851 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 101233851 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017795-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4ur4h
title: Occurrence Download

description: A dataset containing 11858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gossypium hirsutum L., Gossypium barbadense L., Gossypium mustelinum Miers, Kokia drynarioides (Seem.) Lewton, Kokia cookei O.Deg., Kokia kauaiensis (Rock) O.Deg. & I.Deg., Gossypioides kirkii (Mast.) Skovst.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11858 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017815-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0190956.10fu
title: SH0190956.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190957.10fu
title: SH0190957.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0190958.10fu
title: SH0190958.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.