cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25303091
title: Additional file 1 of Reduced representative methylome profiling of cell-free DNA for breast cancer detection

description: Additional file 1: Fig. S1. In silico restriction digestion analysis. a The amount of remaining reads from AT-rich reads deletion of a public WGBS dataset for K562 cells. b The CG rate of remaining reads from AT-rich reads deletion of a public WGBS dataset for K562 cells, compared with a public RRBS dataset for K562 cells. c The percentage of remaining reads mapping to CpG island, CpG shore or CpG shelf, compared to the original WGBS dataset and a RRBS dataset. d The percentage of remaining reads mapping to promoter, compared to the original WGBS dataset and a RRBS dataset. Fig. S2. Genome plot for the GBGT1 gene locus compares read coverage between and WGBS, XRBS, RRBS, 1-cut RRMP and 4-cut RRMP. Boxes represent reads, and unmethylated (blue) and methylated (red) CpGs are indicated. CpG islands are indicated. Fig. S3. RRMP efficiently captures CpGs in CpG islands and promoters. a, b, Plots show the number of CpG islands (a) or promoters (b) with at least 100-fold combined coverage as a function of sequencing depth (x axis) for 4-cut RRMP(K562), XRBS (K562), WGBS (K562) and RRBS (SW1353). Enrichment for functional elements at a uniform sequencing depth of 10 billion base pairs is indicated. Vertical gray line indicates break in x-axis scale. c Plot compares CpG coverage as a function of sequencing depth (x-axis) for WGBS, XRBS, RRBS, 1-cut RRMP and 4-cut RRMP. d, e, Downsampling analysis plot as in panel c but restricted to CpGs within CpG islands (d) and gene promoters (e). f Heat map shows genome-wide DNA methylation in 100-kb windows for 1- cut RRMP, XRBS, WGBS from K562 cells. Fig. S4. RRMP detects tumor-related methylation differences. a Heat map shows Pearson correlation of RRMP methylation profiles of 100 kb windows generated from 9 tumor cell lines and 3 WBC samples from healthy donors. b Heat map depicts hypermethylated and hypomethylated regions in each type of tumor cells compared to WBC samples. Fig. S5. Cell-line-specific DNA hypomethylation from RRMP correlates with H3K27ac signal. Heat map depicts 8-kb regions centered on H3K27ac peaks identified in NCI-H460 and HT29 ChIP-seq datasets. Rows are ordered by DNA methylation difference between both cell lines. Peaks not specifically hypermethylated in either cell line (‘Others’) were downsampled for visualization. Fig. S6. RRMP efficiently captures CpGs in CpG islands and promoters using cfDNA. a Plot compares CpG coverage as a function of sequencing depth (x-axis) for 4-cut RRMP and EM-seq. b, c, Downsampling analysis plot as in panel c but restricted to CpGs within CpG islands (b) and gene promoters (c). d Plot shows coverage depth of CpGs in 4-cut RRMP and EM-seq at a uniform sequencing depth of 10 billion base pairs. e Length distribution of cfDNA fragments from breast cancer patients (BC, n = 29) and non-breast cancer individuals (NBC, n = 27).
DOI: 10.6084/m9.figshare.25303091.v1
title: Additional file 1 of Reduced representative methylome profiling of cell-free DNA for breast cancer detection

description: Additional file 1: Fig. S1. In silico restriction digestion analysis. a The amount of remaining reads from AT-rich reads deletion of a public WGBS dataset for K562 cells. b The CG rate of remaining reads from AT-rich reads deletion of a public WGBS dataset for K562 cells, compared with a public RRBS dataset for K562 cells. c The percentage of remaining reads mapping to CpG island, CpG shore or CpG shelf, compared to the original WGBS dataset and a RRBS dataset. d The percentage of remaining reads mapping to promoter, compared to the original WGBS dataset and a RRBS dataset. Fig. S2. Genome plot for the GBGT1 gene locus compares read coverage between and WGBS, XRBS, RRBS, 1-cut RRMP and 4-cut RRMP. Boxes represent reads, and unmethylated (blue) and methylated (red) CpGs are indicated. CpG islands are indicated. Fig. S3. RRMP efficiently captures CpGs in CpG islands and promoters. a, b, Plots show the number of CpG islands (a) or promoters (b) with at least 100-fold combined coverage as a function of sequencing depth (x axis) for 4-cut RRMP(K562), XRBS (K562), WGBS (K562) and RRBS (SW1353). Enrichment for functional elements at a uniform sequencing depth of 10 billion base pairs is indicated. Vertical gray line indicates break in x-axis scale. c Plot compares CpG coverage as a function of sequencing depth (x-axis) for WGBS, XRBS, RRBS, 1-cut RRMP and 4-cut RRMP. d, e, Downsampling analysis plot as in panel c but restricted to CpGs within CpG islands (d) and gene promoters (e). f Heat map shows genome-wide DNA methylation in 100-kb windows for 1- cut RRMP, XRBS, WGBS from K562 cells. Fig. S4. RRMP detects tumor-related methylation differences. a Heat map shows Pearson correlation of RRMP methylation profiles of 100 kb windows generated from 9 tumor cell lines and 3 WBC samples from healthy donors. b Heat map depicts hypermethylated and hypomethylated regions in each type of tumor cells compared to WBC samples. Fig. S5. Cell-line-specific DNA hypomethylation from RRMP correlates with H3K27ac signal. Heat map depicts 8-kb regions centered on H3K27ac peaks identified in NCI-H460 and HT29 ChIP-seq datasets. Rows are ordered by DNA methylation difference between both cell lines. Peaks not specifically hypermethylated in either cell line (‘Others’) were downsampled for visualization. Fig. S6. RRMP efficiently captures CpGs in CpG islands and promoters using cfDNA. a Plot compares CpG coverage as a function of sequencing depth (x-axis) for 4-cut RRMP and EM-seq. b, c, Downsampling analysis plot as in panel c but restricted to CpGs within CpG islands (b) and gene promoters (c). d Plot shows coverage depth of CpGs in 4-cut RRMP and EM-seq at a uniform sequencing depth of 10 billion base pairs. e Length distribution of cfDNA fragments from breast cancer patients (BC, n = 29) and non-breast cancer individuals (NBC, n = 27).
DOI: 10.6084/m9.figshare.26685924
title: Additional file 3 of The effect of bovine dairy products and their components on the incidence and natural history of infection: a systematic literature review

description: Additional file 3: Supplemental Table 1. Literature Search Strategy. Supplemental Table 2. ROB Assessment: Study Scoring and Determination of Quality. Supplemental Table 3. Dairy Products and Their Components and Leukocytes (N=76)^. Supplemental Table 4. Dairy Products and Their Components and Cytokines (N=47).
DOI: 10.6084/m9.figshare.26685924.v1
title: Additional file 3 of The effect of bovine dairy products and their components on the incidence and natural history of infection: a systematic literature review

description: Additional file 3: Supplemental Table 1. Literature Search Strategy. Supplemental Table 2. ROB Assessment: Study Scoring and Determination of Quality. Supplemental Table 3. Dairy Products and Their Components and Leukocytes (N=76)^. Supplemental Table 4. Dairy Products and Their Components and Cytokines (N=47).
DOI: 10.6084/m9.figshare.25302935
title: Additional file 1 of Pangenome analysis of Shewanella xiamenensis revealed important genetic traits concerning genetic diversity, pathogenicity and antibiotic resistance

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.25302935.v1
title: Additional file 1 of Pangenome analysis of Shewanella xiamenensis revealed important genetic traits concerning genetic diversity, pathogenicity and antibiotic resistance

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.25303153
title: Additional file 2 of Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche

description: Additional file 2: RNA seq data.
DOI: 10.6084/m9.figshare.25303153.v1
title: Additional file 2 of Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche

description: Additional file 2: RNA seq data.
DOI: 10.6084/m9.figshare.26685948
title: Additional file 3 of Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche

description: Additional file 3: SURFME catalogue.
DOI: 10.6084/m9.figshare.26685948.v1
title: Additional file 3 of Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche

description: Additional file 3: SURFME catalogue.
DOI: 10.6084/m9.figshare.26685951
title: Additional file 4 of Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche

description: Additional file 4: Proteomics data.
DOI: 10.6084/m9.figshare.26685951.v1
title: Additional file 4 of Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche

description: Additional file 4: Proteomics data.
DOI: 10.6084/m9.figshare.25303168
title: Additional file 2 of Polygenic effects on the risk of Alzheimer’s disease in the Japanese population

description: Additional file 2.
DOI: 10.6084/m9.figshare.25303168.v1
title: Additional file 2 of Polygenic effects on the risk of Alzheimer’s disease in the Japanese population

description: Additional file 2.
DOI: 10.6084/m9.figshare.25303088
title: Additional file 1 of Primary cilia promote the differentiation of human neurons through the WNT signaling pathway

description: Additional file 1.
DOI: 10.6084/m9.figshare.25303088.v1
title: Additional file 1 of Primary cilia promote the differentiation of human neurons through the WNT signaling pathway

description: Additional file 1.
DOI: 10.6084/m9.figshare.25303175
title: Additional file 2 of Primary cilia promote the differentiation of human neurons through the WNT signaling pathway

description: Additional file 2.
DOI: 10.6084/m9.figshare.25303175.v1
title: Additional file 2 of Primary cilia promote the differentiation of human neurons through the WNT signaling pathway

description: Additional file 2.
DOI: 10.6084/m9.figshare.25303177
title: Additional file 2 of Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia

description: Additional file 2: Table S1. Statistics of Illumina sequencing data of C. japonica. Table S2. Statistics of Hi-C sequencing data. Table S3. Summary of chromosome level assembly based on Hi-C analysis. Table S4. Statistics of chromosome level assembly of cjaND genome. Table S5. Statistics of SLAF-seq data. Table S6. Summary of high-quality SNPs for map construction in each segregation pattern. Table S7. Summary and statistics of linkage groups for cjaND genome. Table S8. Summary of the identification of repetitive sequences. Table S9. Summary of coding gene prediction. Table S10. Statistics of gene information of annotated cjaND genome. Table S11. Summary of BUSCO evaluation results. Table S12. Statistics of the Ortho-group sizes for gene family analysis. Table S13. The gene information of syntenic block containing the AG loci in Chr. 8. Table S14. The genes of subnetwork based on connectivity and gene annotation. Table S15. Primers used in this study
DOI: 10.6084/m9.figshare.25303177.v1
title: Additional file 2 of Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia

description: Additional file 2: Table S1. Statistics of Illumina sequencing data of C. japonica. Table S2. Statistics of Hi-C sequencing data. Table S3. Summary of chromosome level assembly based on Hi-C analysis. Table S4. Statistics of chromosome level assembly of cjaND genome. Table S5. Statistics of SLAF-seq data. Table S6. Summary of high-quality SNPs for map construction in each segregation pattern. Table S7. Summary and statistics of linkage groups for cjaND genome. Table S8. Summary of the identification of repetitive sequences. Table S9. Summary of coding gene prediction. Table S10. Statistics of gene information of annotated cjaND genome. Table S11. Summary of BUSCO evaluation results. Table S12. Statistics of the Ortho-group sizes for gene family analysis. Table S13. The gene information of syntenic block containing the AG loci in Chr. 8. Table S14. The genes of subnetwork based on connectivity and gene annotation. Table S15. Primers used in this study
DOI: 10.6084/m9.figshare.25302846
title: Additional file 1 of Machine learning prediction of future amyloid beta positivity in amyloid-negative individuals

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.25302846.v1
title: Additional file 1 of Machine learning prediction of future amyloid beta positivity in amyloid-negative individuals

description: Supplementary material 1.
DOI: 10.57701/suf.rsdj.2006.1-0
title: Abgeschlossene Rehabilitation 2006
title: SUF
title: RSDJ

description: Scientific Use File Abgeschlossene Rehabilitation (SUF.RSDJ):Grundlage des Querschnittsdatensatzes SUF.RSDJ ist die Reha-Statistik-Datenbasis (§ 4 RSVwV, SK94). Die Grundgesamtheit des SUF.RSDJ bilden Personen, die mindestens eine medizinische oder berufliche Rehabilitation abgeschlossen haben. Dargestellt werden jeweils die jüngsten Reha-Leistungen der Person; für die medizinische Rehabilitation ist dies auf vier, für die berufliche Rehabilitation auf sechs beschränkt. Es wird eine disproportional geschichtete Zufallsstichprobe gezogen, die 10 Prozent für Personen mit mindestens einer medizinischen Leistung, 35 Prozent für Personen mit mindestens einer Leistung zur Teilhabe am Arbeitsleben sowie 35 Prozent für Personen, die sowohl medizinische als auch berufliche Leistungen in Anspruch genommen haben.Neben soziodemographischen Angaben fließen Informationen aus Reha-Antrag und -Bescheid wie beispielsweise Leistungs- oder Durchführungsart ein. Die sozialmedizinische Dokumentation bei Entlassung umfasst unter anderem Informationen zu Reha-Dauer, Behandlungsform, fünf ICD-Diagnosen, Entlassungsform, Vorschläge für nachfolgende Maßnahmen, Arbeitsfähigkeit und Leistungsvermögen.
DOI: 10.15468/dl.gza9gh
title: Occurrence Download

description: A dataset containing 2753 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Arceuthobium M.Bieb."
 ]
}

 The dataset includes 2753 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002119-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egkjyr
title: Occurrence Download

description: A dataset containing 1421 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (PITALITO, huila)",
 "GadmGid is one of (COL.18.25_2)",
 "DatasetKey is one of (Colección Herbario Federico Medem Bogotá - FMB, Field Museum of Natural History (Zoology) Mammal Collection, iNaturalist Research-grade Observations, Herbario Nacional Colombiano (COL))"
 ]
 }
 ]
}

 The dataset includes 1421 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002121-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4aurp
title: Occurrence Download

description: A dataset containing 22470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Sagittarius serpentarius (J.F.Miller, 1779)"
 ]
}

 The dataset includes 22470 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002120-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hb6k5s
title: Occurrence Download

description: A dataset containing 2313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aspergillus flavus Link"
 ]
}

 The dataset includes 2313 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002123-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hw6672
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aspergillus aculeatus Iizuka"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002124-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvvbzg
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plantas etnomédicas del Resguardo Indígena Pijao La Tatacoa, Huila"
 ]
}

 The dataset includes 117 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002125-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcff6h
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "GadmGid is one of (COL.3_2, COL.10_2, COL.17_2)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Jatropha gossypiifolia L."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002126-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.suvmk5
title: Occurrence Download

description: A dataset containing 5684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lentinus tigrinus (Bull.) Fr."
 ]
}

 The dataset includes 5684 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002127-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4h7ed
title: Occurrence Download

description: A dataset listing the 838586 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "Year 2019-2025"
 ]
}

 The dataset's 838586 records were derived from 27461 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002122-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccs6dp1
title: CCDC 721143: Experimental Crystal Structure Determination

description: Related Article: P.O'Donohue, S.A.Brusey, C.M.Seward, Y.Ortin, B.C.Molloy, H.Muller-Bunz, A.R.Manning, M.J.McGlinchey|2009|J.Organomet.Chem.|694|2536|doi:10.1016/j.jorganchem.2009.04.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs6dq2
title: CCDC 721144: Experimental Crystal Structure Determination

description: Related Article: P.O'Donohue, S.A.Brusey, C.M.Seward, Y.Ortin, B.C.Molloy, H.Muller-Bunz, A.R.Manning, M.J.McGlinchey|2009|J.Organomet.Chem.|694|2536|doi:10.1016/j.jorganchem.2009.04.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vd3emu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fungi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-37.5 52.5,-30 52.5,-30 60,-37.5 60,-37.5 52.5))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043043-251009101135966/datasets/export for details.
DOI: 10.5517/ccs6dr3
title: CCDC 721145: Experimental Crystal Structure Determination

description: Related Article: P.O'Donohue, S.A.Brusey, C.M.Seward, Y.Ortin, B.C.Molloy, H.Muller-Bunz, A.R.Manning, M.J.McGlinchey|2009|J.Organomet.Chem.|694|2536|doi:10.1016/j.jorganchem.2009.04.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs6ds4
title: CCDC 721146: Experimental Crystal Structure Determination

description: Related Article: P.O'Donohue, S.A.Brusey, C.M.Seward, Y.Ortin, B.C.Molloy, H.Muller-Bunz, A.R.Manning, M.J.McGlinchey|2009|J.Organomet.Chem.|694|2536|doi:10.1016/j.jorganchem.2009.04.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs6dt5
title: CCDC 721147: Experimental Crystal Structure Determination

description: Related Article: P.O'Donohue, S.A.Brusey, C.M.Seward, Y.Ortin, B.C.Molloy, H.Muller-Bunz, A.R.Manning, M.J.McGlinchey|2009|J.Organomet.Chem.|694|2536|doi:10.1016/j.jorganchem.2009.04.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccs6dv6
title: CCDC 721148: Experimental Crystal Structure Determination

description: Related Article: P.O'Donohue, S.A.Brusey, C.M.Seward, Y.Ortin, B.C.Molloy, H.Muller-Bunz, A.R.Manning, M.J.McGlinchey|2009|J.Organomet.Chem.|694|2536|doi:10.1016/j.jorganchem.2009.04.004
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.