cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/en7-na2-5ty
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l01-dpm-yln
title: Protoheliolites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24891312.v1
title: simulationHistograms.zip

description: Output of simulations used for article Time-of-flight scatter rejection in X-ray radiography
DOI: 10.6084/m9.figshare.25375057.v1
title: Supporting information for the paper "Molecular Insights into the Variability in Infection and Immune Evasion Capabilities of SARS-CoV-2 Variants: A Sequence and Structural Investigation of the RBD Domain".

description: l The "input" subfolder within the support files.zip file contains the protein structure files, topology files, and parameter files required for running the molecular dynamics simulations with GROMACS, as mentioned in the paper "Molecular Insights into the Variability in Infection and Immune Evasion Capabilities of SARS-CoV-2 Variants: A Sequence and Structural Investigation of the RBD Domain". The "rmsd" subfolder includes the root mean square deviation (RMSD) data from all the molecular dynamics simulations, which were run independently in triplicates. The "Ramachandran" subfolder contains the Ramachandran plots for all proteins obtained through homology modeling.l The support_information.pdf contains Figure S1-Figure S4 and Table S1-Table S7 referenced in the main text,which contains detailed RMSD data from the molecular dynamics simulation process of the RBD-ACE2 binding for various variants, statistics of hydrogen bonds and salt bridges, residue contact maps, and detailed data from the alanine scanning residue energy decomposition.
DOI: 10.3535/5rq-nsq-9yv
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9xb-1rl-vbm
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.fh6h87
title: Occurrence Download

description: A dataset containing 1630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Populus laurifolia Ledeb."
 ]
}

 The dataset includes 1630 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009699-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9f9-3rj-9qs
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yhm-yll-3sm
title: Stelliporella

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12364733.v1
title: Additional file 1 of IRF4 and STAT3 activities are associated with the imbalanced differentiation of T-cells in responses to inhalable particulate matters

description: Additional file 1: Reagents and Antibodies. Table S1. Primer sequences for qRT-PCR analyses. We designed all the primers using https://sg.idtdna.com/pages/products/custom-dna-rna combine with the NCBI and UCSC websites. Table S2. Chemical characteristics of the PM samples used for functional analyses. Water soluble ions were analyzed by ion chromatography, element measurement by inductivity coupled plasma-mass spectrometry (ICP-MS); and organic carbon (OC) and elemental carbon (EC) fractions by DRI model 2001 carbon analyzer. Figure S1. The average concentration of PM2.5 and PM10 in the three Chinese cities (Beijing, Taiyuan, Shijiazhuang) during the study period. We collected environmental data of 3 weeks preceding the sampling. The actual time period of sampling in the three cities: 10/04/2014–26/04/2014 in Shijiazhuang, Taiyuan: 21/02/2014–01/05/2014 and Beijing: 26/09/2014–16/10/2014. Figure S2. Size distribution and protease activity of the PM sample. A. 20 × microscopic view of PM suspension showing the distribution of PM2.5 and PM10; B. protease activity of the PM samples based on FITC-labeled casein cleavage hydrolysis assay. The protease activities are measured by mean fluorescence level with standard deviation. Figure S3. Expression levels of T-cell related cytokines in mouse serum follow the treatment of PM. Figure S4. Differentiation statuses of T-cell subtypes in mouse lung following the treatment of PM suspension. T-cell differentiation is evaluated by flow cytometry at 18 h, 24 h, 40 h and 72 h after the treatment.
DOI: 10.6084/m9.figshare.21173749.v1
title: annotation file of pigeon genome.gtf

description: Since the first reference genome of pigeon (<em>Columba livia</em>) was published in 2013, these resources rapid facilitated the development of pigeon related research. Nonetheless, the short-read of next-generation sequencing data were unable to span the greater genomic distances, resulting in draft contained many gaps, imperfections, and ambiguities. Here, we performed a combined strategy using PacBio, Illumina and Hi-C sequencing to generate a high-quality pigeon reference genome. Based on this genome, we predicted 18,660 protein-coding genes.
DOI: 10.6084/m9.figshare.28702670
title: PRISMA_2020_Checklist.docx

description: This study reviews the connection between Jingdezhen art and nature, environment and human expression, and studies the interdisciplinary characteristics and future development trends of ceramic art from the perspective of ecological communication.
DOI: 10.6084/m9.figshare.28702670.v2
title: PRISMA_2020_Checklist.docx

description: This study reviews the connection between Jingdezhen art and nature, environment and human expression, and studies the interdisciplinary characteristics and future development trends of ceramic art from the perspective of ecological communication.
DOI: 10.3535/427-ybk-dtw
title: Chondrites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c2x-azz-vzl
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22578913.v1
title: The history, systematics, and nomenclature of Thalattosuchia (Archosauria: Crocodylomorpha)

description: Herein we include the first supplementary appendix (one including the character list and scoring sources), as well as the data and scripts for the phylogenetic analyses and R analyses. <br> The datasets are: SupermatrixC0.tnt, SupermatrixC1.tnt, SupermatrixC2.tnt, SupermatrixC3.tnt, and SupermatrixC4.tnt. <br> The TNT analysis scripts all end .run. The full explanation appears in the manuscript. In sum, there are the 'fast' versions for quick analyses and the 'full' versions for the final analyses. The analyses were split into two versions, equal weights and extended implied weights (k=15). <br> The R analysis scripts end ".R". They are: 0-Master.R, 1a-Basic_Phylogeny_Images.R, 1b-Time_Scaled_Phylogeny_Images.R, 2a-StratPhyloCongruence.R, and 2b-TreeDistance.R. <br> The accompanying age files for the R analyses are: CrocAges.txt and ThalattosuchianAges.txt.
DOI: 10.6084/m9.figshare.28540256.v1
title: Soil and microbiological data

description: Soil physicochemical properties and microbial relative abundance under different nutrient and litter addition treatments
DOI: 10.6084/m9.figshare.28702670.v1
title: PRISMA_2020_Checklist.docx

description: This study reviews the connection between Jingdezhen art and nature, environment and human expression, and studies the interdisciplinary characteristics and future development trends of ceramic art from the perspective of ecological communication.
DOI: 10.3535/1j2-pdk-394
title: Balanoglossites triadicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y11-hry-z1c
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20485329.v1
title: Transcript IDs upregulated or downregulated in response to pathogen infection.

description: Transcript IDs upregulated or downregulated in response to pathogen infection. Transcripts IDs with scores &gt; 2 and &lt; 0.5 were listed in {experimental name}_up.txt and {experimental name}_down.txt, respectively.
DOI: 10.3535/5bf-52j-fel
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wpe-6dq-dbs
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23802213.v1
title: Preferences and Perceptions of Self-Hypnosis for Sleep in Aging Adults

description: Data from a cross sectional survey of aging adults perceptions and preferences for self-hypnosis for sleep.
DOI: 10.6084/m9.figshare.6965786.v2
title: Supporting Table S1 from Analysis of modularity and integration suggests evolution of dragonfly wing venation mainly in response to functional demands.

description: Overview of the studied species and the corresponding match to the study of Letsch et al. (2016) which was used to correct for potential phylogenetic non-independence of the data. Habitat and coloration coding are given in columns 3 and 4 respectively.
DOI: 10.3535/kqx-7ak-gx4
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wf0-hh9-2c3
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/b42vprtd4h
title: LINF_080011600

description: Amastin; Leishmania infantum
DOI: 10.3535/14x-x0n-per
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n97-kc3-9ds
title: Mastopora C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19958879.v1
title: Incidence of deep vein thrombosis and quality of venous thromboembolism prophylaxis

description: OBJECTIVE: to determine the incidence of deep vein thrombosis and prophylaxis quality in hospitalized patients undergoing vascular and orthopedic surgical procedures. METHODS: we evaluated 296 patients, whose incidence of deep venous thrombosis was studied by vascular ultrasonography. Risk factors for venous thrombosis were stratified according the Caprini model. To assess the quality of prophylaxis we compared the adopted measures with the prophylaxis guidelines of the American College of Chest Physicians. RESULTS: the overall incidence of deep venous thrombosis was 7.5%. As for the risk groups, 10.8% were considered low risk, 14.9%moderate risk, 24.3% high risk and 50.5% very high risk. Prophylaxis of deep venous thrombosis was correct in 57.7%. In groups of high and very high risk, adequate prophylaxis rates were 72.2% and 71.6%, respectively. Excessive use of chemoprophylaxis was seen in 68.7% and 61.4% in the low and moderate-risk groups, respectively. CONCLUSION: although most patients are deemed to be at high and very high risk for deep vein thrombosis, deficiency in the application of prophylaxis persists in medical practice.
DOI: 10.3535/bpc-7sp-b23
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1418048.v1
title: Mangrove Woods Damage Based On Time of Water Absorption Rate of Woods

description: Mangrove forest was a main ecosystem supporting lives in littoral and sea areas. A mangrove forest has various advantages, such as fish, shrimps, crabs, and woods for a number of household needs. Littoral people tend to use mangrove woods to construct boats. The woods used are taken from mangrove trees in their own surrounding since the mangrove woods are considered strong, hard, and durable. The woods damage in sea occurs because the woods structures are not good enough and the amount of the extractive substances contained inside the woods is small. So, the woods structures are easily attacked by sea borer animals, which cause woods damage. The present study of mangrove woods damage based on time of water absorption rate of woods was conducted in Tuada village, sub district of Jailolo, West Halmahera. The purpose of the study was to examine the rate of water absorption on each type of woods and the damage level on each wood. This study employed an experimental design. The experiment woods used in this study were Rhizophora apiculata, Bruguiera gymnorrhiza, Osbornia octodonta, and Xylocarpus moluccensis. The measurement was conducted by: (1) preparing several mangrove boards sizing length 250 cm, width 30 cm, and thickness 4 cm. The boards were immersed 1 m or 2 m depth for about 15 months. The distances between the sea side and the immersed boards were 30 m and 50 m. (2) the rate of water absorption of the immersed board was measured. The data obtained were analysed by using anova and followed by Duncan Multiple Range Test (DMRT). The findings of the study showed that the rate of water absorption on the X. moluccensis was 5,698/second, which was the fastest rate compared to the other wood types. The rate of water absorption on the R. apiculata and B. gymnorrhiza was about 16,523-24,418/second, which was considered as moderate rate, while the slowest rate was found in O. octodonta 90,668/second. The faster the water absorbed by the woods, the higher the woods damage, vice versa.
DOI: 10.6084/m9.figshare.24994215.v1
title: WB_figure 5

description: western blot
DOI: 10.3535/llp-w0h-5za
title: Spinachitina sp. aff. taugourdeaui

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zck-fh5-svd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1xz-tyt-a0g
title: †Triplesia Hall, 1859

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n2n-863-f0d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yjn-srw-33j
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20103716.v1
title: Vasculature Data from MFIAS

description: Raw Data of Vasculature imaging by MFIAS in Fig. 2(c) in the paper of Multifocal fluorescence video-rate imaging of centimetre-wide arbitrarily shaped brain surfaces at micrometric resolution.
DOI: 10.6084/m9.figshare.9204998.v2
title: Genome-Wide Association Study of the Frailty Index - Atkins et al. 2019

description: Genome-wide summary statistics from the GWAS analysis of the Frailty Index in UK Biobank participants of European descent aged 60 to 70 years.<br>Preprint available https://doi.org/10.1101/19007559<br>We used a Frailty Index (FI) based on the accumulation of deficits model (Searle et al. 2008), as validated in UK Biobank previously for its ability to predict all-cause mortality (Williams et al. 2018). The FI was derived using 49 self-reported baseline data variables in UK Biobank. Variables were based on a variety of physiological and mental health domains, and included symptoms, disabilities and diagnosed diseases, which were self-reported by participants at baseline. The FI was generated using a complete-case sample with information on all 49 individual components and presented as a proportion of the sum of all deficits. The FI was quantile normalised (i.e. transformed into a normal distribution) prior to the genome-wide association study (due to the skew of the untransformed trait). The analysis included 164,610 participants of European descent aged 60 to 70 with complete Frailty Index data. <br><br>Results are from UK Biobank genetic data release version 3 (including imputation from HRC and the combined UK10K and 1000 Genomes panels) including 16.4million genetic variants that met the following criteria: minor allele frequency (MAF) &gt;0.1%, Hardy-Weinberg p-value &gt;1x10-9, and imputation quality &gt;0.3. We used the BOLT-LMM (v2.3.2) software used for the GWAS itself (Loh et al. 2015), which uses linear mixed-effects modelling to account for genetic relatedness and confounding by ancestry. Models included age, sex, assessment centre (22 categories), and genotyping array (two categories: Axiom or BiLEVE) as covariates. <br><br>If used please cite paper Atkins et al. 2019 "A Genome-Wide Association Study of the Frailty Index Highlights Synaptic Pathways in Healthy Aging"<br>Fields are as follows:<br> SNP: dbSNP name of genetic marker, if available<br> CHR: chromosome<br> BP: base-pair position on CHR (hg19 / b37)<br> ALLELE1: effect allele<br> ALLELE0: non-effect allele<br> A1FREQ: frequency of ALLELE1INFO: Imputation quality<br>BETA: effect size from BOLT-LMM approximation to infinitesimal mixed model with respect to ALLELE1<br> SE: standard error of effect size<br> P_BOLT_LMM: non-infinitesimal mixed model association test p-value
DOI: 10.3535/djv-zy4-my2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rby-92m-gr0
title: †Ahtiella Öpik, 1932

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22671013.v1
title: Lowest Energy Conformers Dataset for Radical Polymer Design

description: This dataset contains the xyz coordinates of the lowest energy conformers (within a 6 kcal/mol energy window) for radical polymer systems, generated using the Conformer-Rotamer Ensemble Sampling Tool (CREST). The dataset covers four distinct backbones, four different radicals, and three types of spacers or non-spacers, resulting in a comprehensive exploration of conformational space. Each file in the dataset follows the naming convention: "Backbone+Spacer+Radical_InitialConfigs". The backbone abbreviations are as follows: PE: polyethylene PEO: poly(ethylene oxide) PMMA: poly(methyl methacrylate) PDMS: polydimethylsiloxane The spacer names are: Butyl OEG: ethylene glycol Phenyl The radical names are: T: TEMPO Phe: phenoxyl P: PTIO V: verdazyl Conformational sampling was performed separately for all six unique cis and trans initial configurations of the four-unit systems (named as 1111, 1112, 1122, 1211, 1212, 1221). This polymer database has been generated in conjunction with the research manuscript titled "Bridging the Monomer to Polymer Gap in Radical Polymer Design."
DOI: 10.3535/gam-hcd-87q
title: Eunicida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14414981.v1
title: IranData.sav

description: Please email Niloufar Lueke (niloufar.assar@gmail.com) if you have any questions about the analyses reported in the article titled: "Fundamentalism and intrinsic religiosity as factors in well-being and social connectedness: An Iranian study"<br>
DOI: 10.6084/m9.figshare.24831567.v2
title: ISSTA:M2CVD:Multi-Model Collaboration for Code Vulnerability Detection

description: Code and dataISSTA:M2CVD:Multi-Model Collaboration for Code Vulnerability Detection
DOI: 10.6084/m9.figshare.9700370.v1
title: KML 2016 Population Transects

description: Size and Abundance of Cassiopea along two transects at the Keys Marine Laboratory in Layton, Florida, in December 2016. Transects were layed by stretching a measuring tape along the bottom, and placing a 1-m quadrat every 5 feet along the measuring tape. Each quadrat was photographed from above and jellyfish measured using ImageJ image analysis software.
DOI: 10.3535/pfd-543-h4r
title: †Conjungaspis minutus Hints, 1999

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qax-qbq-40b
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wet-59w-svk
title: Spinachitina taugourdeaui

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20626854.v1
title: Blackstain_metaG_MAG

description: MAG - black stain - Lascaux Cave
DOI: 10.6084/m9.figshare.6189113.v1
title: BCD Beam Search evaluation data

description: BCD Beam Search evaluation data The data we have used to evaluate the BCD Beam Search algorithm.<br><b><br></b><b>Simulated datasets:</b> Supertrees and stats for several simulated data sets.The simulated input data was originally published by:<b>SMIDGenOG: </b>https://doi.org/10.7717/peerj.2172 <b>Supertriplet:</b> https://doi.org/10.1093/bioinformatics/btq196<br><br><b>Biological datasets:</b>Supertrees and stats for the biological datasets we used for evaluation.<br>The biological data was originally published by:<b>Primates:</b> http://dx.doi.org/10.1098/rstb.1995.0078<br><b>THPL:</b> http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.398.7077&rep=rep1&type=pdf<br><b>OMM:</b> https://doi.org/10.1093/bioinformatics/btq196<br><b>Bats:</b> https://doi.org/10.1017/S1464793101005899<b>Seabirds:</b>https://doi.org/10.1642/0004-8038(2002)119[0088:SSCPEO]2.0.CO;2<br><br> <br>
DOI: 10.17632/56yn529hvw
title: SHELL2: a package for the calculation of two-loop on-shell Feynman diagrams in FORM

description: Abstract The description of a program written in FORM for the analytic calculation of propagator-type one- and two-loop Feynman graphs with external lines corresponding to massive as well as massless particles on-shell is presented. Dimensional regularization to regularize both ultraviolet and infrared divergences is used. The program calculates the contributions from any such diagram for an arbitrary value of the space-time dimension n in terms of one “master integral” and two simple integrals expres... Title of program: SHELL2 Catalogue Id: ACHZ_v1_0 Nature of problem Dimensionally regularized multiloop massive Feynman integrals of the propagator type appearing in quantum field theory and in particular in high energy calculations are computed analytically. Versions of this program held in the CPC repository in Mendeley Data ACHZ_v1_0; SHELL2; 10.1016/0010-4655(92)90083-B This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/vfp-5tx-j02
title: †Eoplectodonta Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xx5-6ad-fpa
title: Spinachitina fossensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.8085659.v1
title: Bacteriophage one-step growth curve data (Fig S1 A)

description: Bacteriophage one-step growth curve data (Fig S1 A)
DOI: 10.3535/9dq-v3x-lhw
title: †Eoplectodonta Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rtl-j4x-h7n
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.