cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/uuid:aff9fcbc-4dd5-4696-8063-189ec1f2b3cd
title: IDRA weather radar measurements - day 2019-01-30

description: Radar range: standard. Max rain level: weak rain. Parent item: IDRA weather radar measurements - month 2019-01 Measuring instrument: IDRA atmospheric radar in CESAR observatory, Cabauw IRCTR has built a high resolution radar system, IDRA (IRCTR Drizzle Radar), aimed at the detailed observation of the spatial and temporal distribution of rainfall and drizzle. The system was placed at the end of August 2007 on top of a 213 m high meteorological tower in the CESAR (Cabauw Experimental Site for Atmospheric Research) observatory in Cabauw, The Netherlands. This location has several advantages: In the first place, an increased sensitivity due to the reduction of the influence of ground clutter. Secondly, it allows direct observation of the horizontal distribution of low level clouds and fog. Finally, the presence of other instruments in the vicinity enhances the understanding of the physical processes in the atmosphere by synergistically combining their measurements. Data from other instruments at CESAR are available at {http://www.cesar-database.nl}. IDRA provides the horizontal distribution of reflectivity, mean Doppler velocity, Doppler spectrum width and polarimetric parameters like differential reflectivity, linear depolarization ratio or specific differential phase. The data collected is freely available to the scientific community.
DOI: 10.25403/upresearchdata.28595471.v1
title: Macadamia genomic resources for South Africa

description: The genetic diversity and population structure of South African macadamia cultivars present in South Africa was analysed using a panel of 13 microsatellite markers from literature. The population consisted of a total of 110 cultivars that were selected for in South Africa, Australia, Hawaii, California and Israel, as well as a private breeding population from a local farmer. GeneALex, Principal component analysis, Population Structure and Neighbour-Joining phylogenetic tree was used to analysis the data results.Whole genome sequencing, assembly and and annotation was performed for three different cultivars of importance to South Africa, which included Santa Anna (<i>Macadamia tetraphylla</i>), HAES 695/Beaumont (<i>M. interifolia </i>x <i>M. tetraphylla</i>) and HAES 791 (<i>M. interifolia </i>x <i>M. tetraphylla </i>x <i>M. ternifolia</i>). We produced between 80x and 120x coverage long-read sequencing data on the Oxford Nanopore Technologies (ONT), and combined this with between 60x and 120x coverage of the short-read sequencing data from the Illumina Platform. The genomes were assembled with the Shasta, Flye, Masurca and Necat assemblers, however Necat produced the best consensus assemblies. The Necat consensus was further polished and error corrected with three rounds of Racon and one round of Pilon analysis. The final polished Necat assemblies were then purged of redundant sequences to produces haploid assemblies for all three genomes. The quality of the genomes were analysed using the BUSCO and Quast pipelines. Genome annotation was performed using the BRAKER3 pipeline. The input data for BRAKER3 included the repeatmasked genome assemblies (done using RepeatModeler and RepeatMasker), the merged .bam files (from mapping the RNA-Seq data to the masked genome assemblies), and the OrthoDB v11 Viridiplantae protein database. The TSEBRA pipeline was used to combine the most robust gene sets with the best BUSCO completeness scores.Fatty acid biosynthesis genes were analysed to try to determine the underlying mechanisms for the unique oil profile of macadamia nuts. Four gene families were analysed, which included fatty acid desaturase type I (FAD), fatty acid desaturase type II (SAD), beta-ketoacyl-ACP synthases (KAS), and acyl-ACP thioesterase (FAT), which play key roles in unsaturated fatty acid biosynthesis. OrthoFinder and OrthoVenn were used for the analysis, and the genes we annotated were compared to other tree nut and oil producing crop species. other species included walnut (<i>Juglans regia</i>), pistachio (<i>Pistacia vera</i>), almond (<i>Prunus dulcis</i>), hazelnut (<i>Corylus avellana</i>), sunflower (<i>Helianthus annus</i>), olive (<i>Olea europaea</i>), and cocoa (<i>Theobroma cacao</i>) species. The results were analysed using ClustalW alignments and RaXML-ng and viewed using phylogenetic trees and drawn on the iTOL online platform.
DOI: 10.6084/m9.figshare.3517010.v1
title: Appendix A. Probability of occupancy for eight species of small mammals in response to pine basal area (Fig. 3) with standard errors.

description: Probability of occupancy for eight species of small mammals in response to pine basal area (Fig. 3) with standard errors.
DOI: 10.6084/m9.figshare.21440505.v1
title: aldy_sample_data

description: sample data for aldy tool
DOI: 10.6084/m9.figshare.22147508.v1
title: Statistical Process Control as a Tool for Quality Improvement A Case Study in Denim Pant Production

description: In this paper, we show that concept of Statistical Process Control tools was thoroughly examined and the definitions of quality control concepts were presented. This is significant because of it is anticipated that this study will contribute to the literature as an exemplary application that demonstrates the role of statistical process control (SPC) tools in quality improvement in the evaluation and decision-making phase. <br> This is significant because of this study is to investigate applications of quality control, to clarify statistical control methods and problem-solving procedures, to generate proposals for problem-solving approaches, and to disseminate improvement studies in the ready-to-wear industry. The basic Statistical Process Control tools used in the study, the most repetitive faults were detected and these faults were divided into sub-headings for more detailed analysis. In this way, it was tried to prevent the repetition of faults by going down to the root causes of any detected fault. With this different perspective, it is expected that the study will contribute to other fields. <br> We give consent for the publication of identifiable details, which can include photograph(s) and case history and details within the text (“Material”) to be published in the Journal of Quality Technology. We confirm that have seen and been given the opportunity to read both the Material and the Article (as attached) to be published by Taylor & Francis.
DOI: 10.6084/m9.figshare.3516608.v1
title: Appendix A. Methods of estimating carrying capacity and intrinsic rate of increase.

description: Methods of estimating carrying capacity and intrinsic rate of increase.
DOI: 10.17870/bathspa.12912290.v1
title: The Habits of Artists - Research Timeline and Research Questions

description: By understanding the patterns and routines in artists’ behaviours as unique features of creative knowledge making, <i>The Habits of Artists</i> seeks to deepen our insight into art learning. Employing a unique platform through which the audience is engaged in public learning as performance, the research asks whether we can find fitting frameworks for communicating the complexities of art practice, in which often subjective and bespoke logics drive creativity.<br>This item contains a Timeline of the research project and a set of Research Questions.
DOI: 10.6084/m9.figshare.25765524.v4
title: Supplementary Data

description: Supplementary data to An enhanced large-scale prediction strategy identifies ADAR1-mediated A-to-I edited RNAs in Human cancer
DOI: 10.6084/m9.figshare.28728848.v1
title: data.xlsx

description: Raw data
DOI: 10.6084/m9.figshare.17049761.v2
title: EYET.zip

description: Eye-tracker data using Tobii x3-120 in OsloMet.
DOI: 10.6084/m9.figshare.25355857.v1
title: CDI related MAGs

description: The CDI-related microbial genome catalog, comprises 3,741 non-redundant metagenome-assembled genomes at the strain level.
DOI: 10.6084/m9.figshare.25599156.v1
title: files_metadata

description: <pre>PDF with metadata for each face's MAT and JPG files with file name, size, and dimension. Dimension was presented in pixel and wavelength units as HxWx? for MAT files and as HxW for JPG files, in which H, W, and ? correspond to the height, weight, and wavelength from 400 nm to 720 nm, respectively.</pre>
DOI: 10.6084/m9.figshare.8166635.v1
title: Appendix 4: Raw anonymised data - The future of open access books: Findings from a global survey of academic book authors

description: Appendix to the Springer Nature white paper "The future of open access books: Findings from a global survey of academic book authors."<br>This file contains the raw anonymised data showing survey responses.<br>Related downloads:<br>White paperhttps://figshare.com/articles/The_future_of_open_access_books_Findings_from_a_global_survey_of_academic_book_authors/8166599<br><br>Appendix 3: survey questionshttps://figshare.com/articles/Appendix_3_Survey_questions_-_The_future_of_open_access_books_Findings_from_a_global_survey_of_academic_book_authors/8166629<br><br>Charts from the white paperhttps://figshare.com/articles/Charts_from_white_paper_The_future_of_open_access_books_Findings_from_a_global_survey_of_academic_book_authors_/8248268<br><br>Infographic summary of the white paperhttps://figshare.com/articles/Infographic_summary_of_The_future_of_open_access_books_Findings_from_a_global_survey_of_academic_book_authors_white_paper/8248271<br>
DOI: 10.6084/m9.figshare.5450836.v1
title: HPLC-DAD method development and validation for the quantification of hydroxymethylfurfural in corn chips by means of response surface optimisation

description: In recent years, there has been an increased concern about the presence of toxic compounds derived from the Maillard reaction produced during food cooking at high temperatures. The main toxic compounds derived from this reaction are acrylamide and hydroxymethylfurfural (HMF). The majority of analytical methods require sample treatments using solvents which are highly polluting for the environment. The difficulty of quantifying HMF in complex fried food matrices encourages the development of new analytical methods. This paper provides a rapid, sensitive and environmentally-friendly analytical method for the quantification of HMF in corn chips using HPLC-DAD. Chromatographic separation resulted in a baseline separation for HMF in 3.7 min. Sample treatment for corn chip samples first involved a leaching process using water and afterwards a solid-phase extraction (SPE) using HLB-Oasis polymeric cartridges. Sample treatment optimisation was carried out by means of Box–Behnken fractional factorial design and Response Surface Methodolog y to examine the effects of four variables (sample weight, pH, sonication time and elution volume) on HMF extraction from corn chips. The SPE-HPLC-DAD method was validated. The limits of detection and quantification were 0.82 and 2.20 mg kg<sup>−1</sup>, respectively. Method precision was evaluated in terms of repeatability and reproducibility as relative standard deviations (RSDs) using three concentration levels. For repeatability, RSD values were 6.9, 3.6 and 2.0%; and for reproducibility 18.8, 7.9 and 2.9%. For a ruggedness study the Yuden test was applied and the result demonstrated the method as robust. The method was successfully applied to different corn chip samples.
DOI: 10.6084/m9.figshare.3552090.v1
title: Appendix B. Estimating population size.

description: Estimating population size.
DOI: 10.6084/m9.figshare.20254683.v1
title: Supplementary Material for: Serum Creatinine Patterns in Neonates Treated with Therapeutic Hypothermia for Neonatal Encephalopathy

description: <b><i>Introduction:</i></b> There is large variability in kidney function and injury in neonates with neonatal encephalopathy (NE) treated with therapeutic hypothermia (TH). Acute kidney injury (AKI) definitions that apply categorical approaches may lose valuable information about kidney function in individual patients. Centile serum creatinine (SCr) over postnatal age (PNA) may provide more valuable information in TH neonates. <b><i>Methods:</i></b> Data from seven TH neonates and one non-TH-treated, non-NE control cohorts were pooled in a retrospective study. SCr centiles over PNA, and AKI incidence (definition: SCr ↑≥0.3 mg/dL within 48 h, or ↑ ≥1.5 fold vs. the lowest prior SCr within 7 days) and mortality were calculated. Repeated measurement linear models were applied to SCr trends, modeling SCr on PNA, birth weight or gestational age (GA), using heterogeneous autoregressive residual covariance structure and maximum likelihood methods. Findings were compared to patterns in the control cohort. <b><i>Results:</i></b> Among 1,136 TH neonates, representing 4,724 SCr observations, SCr (10th–25th–50th–75th–90th–95th) PNA centiles (day 1–10) were generated. In TH neonates, the AKI incidence was 132/1,136 (11.6%), mortality 193/1,136 (17%). AKI neonates had a higher mortality (37.2–14.3%, <i>p</i> &lt; 0.001). Median SCr patterns over PNA were significantly higher in nonsurvivors (<i>p</i> &lt; 0.01) or AKI neonates (<i>p</i> &lt; 0.001). In TH-treated neonates, PNA and GA or birth weight explained SCr variability. Patterns over PNA were significantly higher in TH neonates to controls (801 neonates, 2,779 SCr). <b><i>Conclusions:</i></b> SCr patterns in TH-treated NE neonates are specific. Knowing PNA-related patterns enable clinicians to better assess kidney function and tailor pharmacotherapy, fluids, or kidney supportive therapies.
DOI: 10.6084/m9.figshare.21901035.v1
title: Table S1.xls

description: Table S1: The main physicochemical parameters of the lakes Labynkyr and Vorota in the study period
DOI: 10.6084/m9.figshare.3459632.v43
title: Modality exclusivity norms for 747 properties and concepts in Dutch: a replication of English (in prep.)

description: This study is a cross-linguistic, conceptual replication of Lynott and Connell’s (2009, 2013) modality exclusivity norms. Their English properties and concepts were translated into Dutch, then independently tested as follows. Forty-two respondents rated the auditory, haptic, and visual strength of those words. Mean ratings were then computed, with a high interrater reliability and interitem consistency. Based on the three modalities, each word also features a specific modality exclusivity, and a dominant modality. The norms also include external measures of word frequency, length, distinctiveness, age of acquisition, and known percentage. Starting with the results, unimodal, bimodal, and tri-modal words appear. Visual and haptic experience are quite related, leaving a more independent auditory experience. These different relations are important because they may correlate with different levels of detail in word comprehension (Louwerse & Connell, 2011). Auditory and visual words tend towards unimodality, whereas haptic words tend towards multimodality. Likewise, properties are more unimodal than concepts. The form of words is not quite as arbitrary as we used to think. It is connected to their meaning. This 'sound symbolism' was tested by means of a regression: Auditory strength predicts lexical properties of the words (frequency, distinctiveness...) better than the other modalities do, or else with a different polarity. Last, words from these norms were used as the stimuli for an experiment, in which switches across modalities incurred processing costs (Bernabeu, Willems, & Louwerse, 2017). - Dashboard for using Dutch modality norms (336 properties, 411 concepts) and exploring various analyses with them.<br> - A summary may be found here. - The entire data set and analysis code are available.<strong><br> </strong> References Bernabeu, P., Willems, R. M., & Louwerse, M. M. (2017). Modality switch effects emerge early and increase throughout conceptual processing: Evidence from ERPs. In G. Gunzelmann, A. Howes, T. Tenbrink, & E. J. Davelaar (Eds.), <em>Proceedings of the 39th Annual Conference of the Cognitive Science Society</em> (pp. 1629-1634). Austin, TX: Cognitive Science Society. Louwerse, M., & Connell, L. (2011). A taste of words: linguistic context and perceptual simulation predict the modality of words. <em>Cognitive Science, 35, </em>2, 381-98. Lynott, D., & Connell, L. (2009). Modality exclusivity norms for 423 object properties. <em>Behavior Research Methods, 41, </em>2, 558-564. Lynott, D., & Connell, L. (2013). Modality exclusivity norms for 400 nouns: The relationship between perceptual experience and surface word form.<em> Behavior Research Methods, 45</em>, 516-526.
DOI: 10.6084/m9.figshare.23805354.v1
title: Dataset Persuasive.xlsx

description: The persuasive dataset comprises news content from Indonesian news portals, expertly annotated to analyze the effectiveness of persuasive elements.
DOI: 10.35092/yhjc.10250666.v1
title: H1N1 pdm PA::GFP intracellular movement in Latrunculin A (1 µm) treated A549 cells during infection

description: TIFF series of diSPIM datasets, fused and deconvolved, from A549 cells infected with H1N1 pdm PA::GFP and treated with latrunculin A (1 µm). Each TIFF file is a full cell volume of 50 planes, with isotropic resolution of 330nm, each .zip file is an independent replicate with at least 1 or 2 cells analyzed for 3D tracking of cytoplasmic foci with 500 time stamps. These data correspond to Supplementary Movie 8 and analysis of these movies provided data presented in Figure 4 and Supplementary Figure 8.<br>Supplementary Movie 8: A549 cells infected with H1N1 pandemic influenza expressing GFP-tagged PA protein and treated with latrunculin A (1 µm). <br>Figure 4: Effect of cytoskeleton depolymerization on motion dynamics of influenza vRNP in A549 cells. <br>Supplementary Figure 8: Impact of cytoskeletal depolymerizing drugs on the transport of PA::GFP.
DOI: 10.6084/m9.figshare.25517470.v1
title: Benthic Macroinvertebrate Waterbody Occupancy Data

description: Percent waterbody occupancy data for each macroinvertebrate genus in the range map data. Data give percentages describing how each genus is partitioned between boatable streams, wadeable streams, inland lakes, coastal estuaries, and Laurentian Great Lakes. Percentages are corrected for sampling effort between the waterbody types.
DOI: 10.6084/m9.figshare.17206904.v1
title: healing-pressure-ulcer-0013.jpg

description: 1. images of pressure ulcer 2. labeled by superpixels segmentation preprocessing3. Labeled target ： tissues insides the wound
DOI: 10.4121/14377295.v1
title: Lifecycle ageing tests on commercial 18650 Li ion cell @ 10°C and 0°C

description: Cycling ageing of Li ion 18650 commercial cell (Ni rich positive electrode and Si/Gr based negative electrode).Each test condition was applied on two cells.<br>The cells were aged at different C-rates and different environmental temperatures.The cells were cycled within a 10-90%SOC window. These levels are defined from fresh cells and fixed (i.e. not updated with ageing).The cycling is regularly interrupted to run a reference test.More details of the ageing tests can be found in the Everlasting deliverablehttps://everlasting-project.eu/wp-content/uploads/2020/03/EVERLASTING_D2.3_final_20200228.pdf
DOI: 10.6084/m9.figshare.28597625.v2
title: <b>Dynamically Adjusting Inter-Temporal Choice Task in Rodents </b>

description: This dataset includes behavioral data from a study investigating a novel dynamically adjusting delay discounting task in rats. The task allows trial-by-trial delay adjustments based on individual choice history, enabling a flexible and self-regulated decision-making paradigm. The data include individual rat choices, delay values, inter-trial intervals (ITIs), reward types, and timestamps across sessions. Also included are processed files for alternating choice analysis and quartile-based session summaries.
DOI: 10.6084/m9.figshare.5126755.v1
title: Supplementary Material for: Early Infant Feeding and Adiposity Risk: From Infancy to Adulthood

description: <b><i>Introduction:</i></b> Systematic reviews suggest that a longer duration of breast-feeding is associated with a reduction in the risk of later overweight and obesity. Most studies examining breast-feeding in relation to adiposity have not used longitudinal analysis. In our study, we aimed to examine early infant feeding and adiposity risk in a longitudinal cohort from birth to young adulthood using new as well as published data. <b><i>Methods:</i></b> Data from the Western Australian Pregnancy Cohort (Raine) Study in Perth, W.A., Australia, were used to examine associations between breast-feeding and measures of adiposity at 1, 2, 3, 6, 8, 10, 14, 17, and 20 years. <b><i>Results:</i></b> Breast-feeding was measured in a number of ways. Longer breast-feeding (in months) was associated with reductions in weight z-scores between birth and 1 year (β = -0.027; p &lt; 0.001) in the adjusted analysis. At 3 years, breast-feeding for &lt;4 months increased the odds of infants experiencing early rapid growth (OR 2.05; 95% CI 1.43-2.94; p &lt; 0.001). From 1 to 8 years, children breast-fed for ≤4 months compared to ≥12 months had a significantly greater probability of exceeding the 95th percentile of weight. The age at which breast-feeding was stopped and a milk other than breast milk was introduced (introduction of formula milk) played a significant role in the trajectory of the BMI from birth to 14 years; the 4-month cutoff point was consistently associated with a higher BMI trajectory. Introduction of a milk other than breast milk before 6 months compared to at 6 months or later was a risk factor for being overweight or obese at 20 years of age (OR 1.47; 95% CI 1.12-1.93; p = 0.005). <b><i>Discussion:</i></b> Breast-feeding until 6 months of age and beyond should be encouraged and is recommended for protection against increased adiposity in childhood, adolescence, and young adulthood. Adverse long-term effects of early growth acceleration are fundamental in later overweight and obesity. Formula feeding stimulates a higher postnatal growth velocity, whereas breast-feeding promotes slower growth and a reduced likelihood of overweight and obesity. Biological mechanisms underlying the protective effect of breast-feeding against obesity are based on the unique composition and metabolic and physiological responses to human milk.
DOI: 10.6084/m9.figshare.12709550.v1
title: INH_toxicity_datasets

description: datasets related to isoniazid toxicity in liver cells<br>
DOI: 10.6084/m9.figshare.13147324.v10
title: QMOF Database

description: This repository hosts the Quantum MOF (QMOF) database as described in: https://doi.org/10.1016/j.matt.2021.02.015.<br>IMPORTANT NOTE: Please check out the QMOF GitHub repository for a description of the files hosted here, supplemental scripts, and other related information:https://github.com/arosen93/QMOF. Additional tabulated and raw data can be accessed via the GitHub page!<br>If you are looking to download any of the files on Figshare to a compute cluster, you can avoid transferring them from your local machine by instead: 1) right-clicking the "download" link for the file you want; 2) selecting "copy link"; 3) running `wget https://ndownloader.figshare.com/files/######` (where this is the copied link) on the computer cluster; 4) after it downloads, renaming the file with the appropriate extension and unpacking it as usual.<br>This work was supported in part by the U.S. Department of Energy, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences and Biosciences through the Nanoporous Materials Genome Center under Award Number DE-FG02-17ER16362.
DOI: 10.6084/m9.figshare.28513151.v2
title: Confluence PARAFAC model results

description: This dataset contains the model generation, validation, and Em and Ex loadings for the 5 component PARAFAC model generated for "Hydrologic management convolutes expected spatiotemporal patterns of dissolved organic matter in the Hudson River".
DOI: 10.6084/m9.figshare.19397903.v2
title: Mascot Generic Files of cobra venoms

description: Mascot Generic Files (MGF) of Naja naja, Naja pallida, Naja nigrollis, Naja haje, and Hemachatus haemachatus