cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31157620.v1
title: High-Resolution Acoustic Resonance and Midbrain Signal Integration

description: High-Resolution Auditory Signal Integration
Observation Summary:
This dataset documents the high-fidelity tracking of mechanical resonance and string displacement. The data records a transition from standard auditory perception to raw signal monitoring, specifically identifying the tension shifts and dampening mechanisms within acoustic instruments.
Technical Specifications:
Anatomic Target: Inferior Colliculus (Auditory Midbrain).
Coordinate System: MNI152 / LPI Coordinates.
Format: BIDS-compliant .tsv for time-series data and .json for metadata.
Variables: Frequency (Hz), Tension (N), and Cent Deviation.
Physical Verification:
The "fuller" and "natural" sound quality is a result of independent harmonic resolution. By identifying the operator-induced stress on the string, the system processes frequency shifts at a resolution of 42.22 cents, bypassing standard perceptual compression.
Data Integrity:
The integrity of this record is secured via SHA-256 hashing. Any alteration to the raw data or the logic of the code will result in a mismatch with the provided fingerprint.
Verification Hash: 761168170c0f993f4e8832a24687be6993130836152b1239868770c0c7042858
DOI: 10.5061/dryad.rc3cp
title: Data from: Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon

description: Evaluations of human impacts on Earth's ecosystems often ignore
 evolutionary changes in response to altered selective regimes. Freshwater
 habitats for Snake River fall Chinook salmon (SRFCS), a threatened species
 in the U.S., have been dramatically changed by hydropower development and
 other watershed modifications. Associated biological changes include a
 shift in juvenile life history: historically essentially 100% of juveniles
 migrated to sea as subyearlings, but a substantial fraction have migrated
 as yearlings in recent years. In contemplating future management actions
 for this species should major Snake River dams ever be removed (as many
 have proposed), it will be important to understand whether evolution is at
 least partially responsible for this life-history change. We hypothesized
 that if this trait is genetically based, parents who migrated to sea as
 subyearlings should produce faster-growing offspring that would be more
 likely to reach a size threshold to migrate to sea in their first year. We
 tested this with phenotypic data for over 2600 juvenile SRFCS that were
 genetically matched to parents of hatchery and natural origin. Three lines
 of evidence supported our hypothesis: 1) the animal model estimated
 substantial heritability for juvenile growth rate for three consecutive
 cohorts; 2) linear modeling showed an association between juvenile life
 history of parents and offspring growth rate; and 3) faster-growing
 juveniles migrated at greater speeds, as expected if they were more likely
 to be heading to sea. Surprisingly, we also found that parents reared a
 full year in a hatchery produced the fastest-growing offspring of
 all—apparently an example of cross-generational plasticity associated with
 artificial propagation. We suggest that SRFCS is an example of a
 potentially large class of species that can be considered to be
 “anthro-evolutionary”—signifying those whose evolutionary trajectories
 have been profoundly shaped by altered selective regimes in
 human-dominated landscapes.
description: Juvenile migration
 dataContains information
 about migration of tagged juvenile salmon through the Snake and Columbia
 River hydropower systemLife history
 dataContains information
 about growth rate of juvenile offspring and life history information about
 their parentsOffspring
 genotypesMicrosatellite genotypes
 for juveniles used in this studyParental
 genotypesMicrosatellite genotypes
 for all adults spawned 2007-2009
DOI: 10.5061/dryad.h3fj0
title: Data from: Process-based simulation of prairie growth

description: When field research is cost- or time-prohibitive, models can inform
 decision-makers regarding the impact of agricultural policy on production
 and the environment, but process-based models that simulate
 animal-plant-soil interaction and ecosystem services in grazing lands are
 rare. In the U.S.A., APEX (Agricultural Policy/Environmental eXtender) is
 a model commonly used to inform policy on cropland, but its ability to
 simulate grazinglands was less robust. Therefore, we enhanced the APEX
 model’s plant growth module to improve its utility on grazing lands.
 Improvements addressed allocation of new biomass, response to water
 stress, competition for soil water, and regrowth of herbaceous perennials.
 Sensitivity analysis demonstrated that simulated biomass responded to
 changes in precipitation through adjustments to both total biomass and
 distribution of biomass aboveground and belowground. A deep-rooted species
 generally outperformed a shallow-rooted species but the relative advantage
 was greatest when precipitation was historically low. A 10-year dataset of
 peak biomass collected in central Kansas, U.S.A., was divided among 5
 species and species groups and was used for calibration and validation.
 When the mass of all species was combined in the validation dataset, the
 percent bias was −2%, Willmott’s Dr was 0.79, and r2 was 0.84. When
 biomass production of individual species was analyzed, the model did not
 perform as well, with the percent bias ranging from −36 to 29%, Willmott’s
 Dr ranging from 0.58 to 0.71, and r2 from 0.25 to 0.67. Because grazing
 lands often have a rich species diversity, the improvements made APEX
 better-suited to modeling such heterogeneous landscapes. However,
 simulating biomass of individual species, rather than the sum of all
 species, is an area that still needs improvement. Further testing at
 additional sites to calibrate single- and multiple-species growth and
 identify any spatial trends in model performance will also be beneficial.
description: APEX
 1203APEX model executable,
 version 1203APEX1203cjz-jw-comp.exeAPEX1203 prairie simulation-Hays KSThe zipped archive contains all of the input files used to run the APEX 1203 model for the various scenarios referenced in the journal article.
DOI: 10.5061/dryad.568jh
title: Data from: Macroevolutionary patterns in Rhynchocephalia: is the tuatara (Sphenodon punctatus) a living fossil?

description: The tuatara, Sphenodon punctatus, known from 32 small islands around New
 Zealand, has often been noted as a classic ‘living fossil’ because of its
 apparently close resemblance to its Mesozoic forebears and because of a
 long, low-diversity history. This designation has been disputed because of
 the wide diversity of Mesozoic forms and because of derived adaptations in
 living Sphenodon. We provide a testable definition for ‘living fossils’
 based on a slow rate of lineage evolution and a morphology close to the
 centroid of clade morphospace. We show that through their history since
 the Triassic, rhynchocephalians had heterogeneous rates of morphological
 evolution and occupied wide morphospaces during the Triassic and Jurassic,
 and these then declined in the Cretaceous. In particular, we demonstrate
 that the extant tuatara underwent unusually slow lineage evolution, and is
 morphologically conservative, being located near the centre of the
 morphospace for all Rhynchocephalia.
description: Dryad_Herrera_Flores_et_al_2017This file includes the complete results of the geometric morphometrics analysis, evolutionary rates and phylomorphospace as well as an spreadsheet with supplementary information.Dryad_Herrera_Flores_et_al.zip
DOI: 10.15468/dl.bburz8
title: Occurrence Download

description: A dataset containing 33999 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aurelia aurita"
 ]
}

 The dataset includes 33999 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001499-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.70c9v
title: Data from: Limited evidence for third party affiliation during development in wild chimpanzees (Pan troglodytes schweinfurthii)

description: Examining the ontogeny of conflict-mitigating behaviors in our closest
 living relatives is an important component of understanding the
 evolutionary origins of cooperation in our species. In this study, we used
 26 years of data to investigate the emergence of third party affiliation
 (TPA), defined as affiliative contact given to recipients of aggression by
 uninvolved bystanders (regardless of initiation), in wild immature eastern
 chimpanzees (Pan troglodytes schweinfurthii) of Gombe National Park,
 Tanzania. We also characterized TPA by mothers in the same dataset as an
 adult benchmark for interpreting immature TPA patterns. In summary, we
 found that immatures did not express TPA as measured by grooming between
 the ages of 1.5 - 12.0 years and that there was limited evidence that
 immatures expressed TPA via play. We also found that mothers did express
 TPA to offspring, although mothers did not show TPA towards non-offspring.
 Cases of TPA by mothers to other adults were too few to analyze
 separately. These results contrast with findings from captive studies
 which found that chimpanzees as young as 6 years of age demonstrated TPA.
 We argue that within-species variation in the expression of TPA, both in
 immatures and adulthood, provides evidence that the conflict management
 behaviors of young chimpanzees may be heavily influenced by social,
 ecological, and demographic factors.
description: Immature non-conflict
 intervals10-minute non-conflict
 intervals from follows of immatures in a given age bin used to generate
 bootstrapped means of grooming and play.Maternal non-conflict
 intervals10-minute non-conflict
 intervals from follows of mothers used to generate bootstrapped means of
 grooming.
DOI: 10.5061/dryad.gb424
title: Data from: A low-cost solution for documenting distribution and abundance of endangered marine fauna and impacts from fisheries

description: Fisheries bycatch is a widespread and serious issue that leads to declines
 of many important and threatened marine species. However, documenting the
 distribution, abundance, population trends and threats to sparse
 populations of marine species is often beyond the capacity of developing
 countries because such work is complex, time consuming and often extremely
 expensive. We have developed a flexible tool to document spatial
 distribution and population trends for dugongs and other marine species in
 the form of an interview questionnaire supported by a structured data
 upload sheet and a comprehensive project manual. Recognising the effort
 invested in getting interviewers to remote locations, the questionnaire is
 comprehensive, but low cost. The questionnaire has already been deployed
 in 18 countries across the Indo-Pacific region. Project teams spent an
 average of USD 5,000 per country and obtained large data sets on dugong
 distribution, trends, catch and bycatch, and threat overlaps. Findings
 indicated that &gt;50% of respondents had never seen dugongs and that
 20% had seen a single dugong in their lifetimes despite living and fishing
 in areas of known or suspected dugong habitat, suggesting that dugongs
 occured in low numbers. Only 3% of respondents had seen mother and calf
 pairs, indicative of low reproductive output. Dugong hunting was still
 common in several countries. Gillnets and hook and line were the most
 common fishing gears, with the greatest mortality caused by gillnets. The
 questionnaire has also been used to study manatees in the Caribbean,
 coastal cetaceans along the eastern Gulf of Thailand and western
 Peninsular Malaysia, and river dolphins in Peru. This questionnaire is a
 powerful tool for studying distribution and relative abundance for marine
 species and fishery pressures, and determining potential conservation
 hotspot areas. We provide the questionnaire and supporting documents for
 open-access use by the scientific and conservation communities.
description: Questionnaire Data - All
 14Feb17
DOI: 10.5061/dryad.6k294
title: Data from: Freezer on, lights off! Environmental effects on activity rhythms of fish in the Arctic

description: Polar regions are characterized by acute seasonal changes in the
 environment, with organisms inhabiting these regions lacking diel
 photoperiodic information for parts of the year. We present, to our
 knowledge, the first high-resolution analysis of diel and seasonal
 activity of free-living fishes in polar waters (74°N), subject to extreme
 variation in photoperiod, temperature and food availability. Using
 biotelemetry, we tracked two sympatric ecomorphs of lake-dwelling Arctic
 charr (Salvelinus alpinus n = 23) over an annual cycle. Charr activity
 rhythms reflected the above-surface photoperiod (including under ice),
 with diel rhythms of activity observed. During the dark winter solstice
 period, charr activity became arrhythmic and much reduced, even though
 estimated light levels were within those at which charr can feed. When
 twilight resumed, charr activity ensued as diel vertical migration, which
 continued throughout spring and with increasing day length, despite stable
 water temperatures. Diel activity rhythms ceased during the polar day,
 with a sharp increase in arrhythmic fish activity occurring at ice-break.
 Despite contrasting resource use, circannual rhythms were mirrored in the
 two ecomorphs, although individual variability in activity rhythms was
 evident. Our data support conclusions of functionally adaptive periods of
 arrhythmicity in polar animals, suggesting maintenance of a circannual
 oscillator for scheduling seasonal behavioural and developmental
 processes.
description: Photoperiod_DyradTracking data of 23 individual Arctic charr, from Lake Ellasjøen, Bear Island, Norway. Data is derived by biotelemetry from Sep 2009- Aug 2010.
DOI: 10.6084/m9.figshare.29858642
title: data.rar

description: The data provided correspond to the paper titled "Automated Identification and Microphysical Characterization of Z<sub>DR</sub> Columns in Severe Thunderstorms". The data.rar file contains six folders. Within the six folders, you will find the data corresponding to Figures 4–9 in the paper.
DOI: 10.6084/m9.figshare.29858642.v3
title: data.rar

description: The data provided correspond to the paper titled "Automated Identification and Microphysical Characterization of Z<sub>DR</sub> Columns in Severe Thunderstorms". The data.rar file contains six folders. Within the six folders, you will find the data corresponding to Figures 4–9 in the paper.
DOI: 10.5061/dryad.n0d08
title: Data from: Novel orthopoxvirus infection in an Alaska resident

description: Background. Human infection by orthopoxviruses is being reported with
 increasing frequency, attributed in part to the cessation of smallpox
 vaccination and concomitant waning of population-level immunity. In July
 2015, a female resident of interior Alaska, presented to an urgent care
 clinic with a dermal lesion consistent with poxvirus infection. Laboratory
 testing of a virus isolated from the lesion confirmed infection by an
 Orthopoxvirus. Methods. The virus isolate was characterized by using
 electron microscopy and nucleic acid sequencing. An epidemiologic
 investigation that included patient interviews, contact tracing and serum
 testing, as well as environmental and small mammal sampling was conducted
 to identify the infection source and possible additional cases. Results.
 Neither signs of active infection nor evidence of recent prior infection
 were observed in any of the 4 patient contacts identified. The
 patient's infection source was not definitively identified. Potential
 routes of exposure included imported fomites from Azerbaijan by the
 patient's cohabiting partner, or from wild small mammals in or around
 the patient's residence. Phylogenetic analyses demonstrated that the
 virus represents a distinct and previously undescribed genetic lineage of
 Orthopoxvirus, which is most closely related to the Old World
 orthopoxviruses. Conclusions. Investigation findings point to infection of
 the patient following exposure in or near Fairbanks. This conclusion
 raises questions about the geographic origins (Old World versus North
 American) of the genus Orthopoxvirus. Clinicians should remain vigilant
 for signs of poxvirus infection and alert public health officials when
 cases are suspected.
description: 9_Gene_alignmentThis is the nexus file used for the phylogenetic analysesAKpox55.nex
DOI: 10.6084/m9.figshare.29858642.v2
title: data_codes.rar

description: The data provided correspond to the paper titled "Z<sub>DR</sub> Column Morphology as a Quantitative Proxy for Updraft Strength in Severe Thunderstorms". The data_codes.rar file contains four folders and four files. Within the four folders, you will find the data corresponding to Figures 3–4 in the paper and Figures S1-S2 in the Supporting Information.The four files containing the Python code needed to process these data and plot these figures.
DOI: 10.5061/dryad.21bg6
title: Data from: Root phenology unresponsive to earlier snowmelt despite advanced aboveground phenology in two subarctic plant communities

description: Earlier snowmelt at high latitudes advances aboveground plant phenology,
 thereby affecting water, nutrient and carbon cycles. Despite the key role
 of fine roots in these ecosystem processes, phenological responses to
 earlier snowmelt have never been assessed belowground. We experimentally
 advanced snowmelt in two contrasting plant community types, heath and
 meadow, in northern Sweden and measured above- and belowground phenology:
 leaf-out, flowering and fine root growth. We expected earlier snowmelt to
 advance both above- and belowground phenology, and shrub-dominated heath
 to be more responsive than meadow. Snow melted on average nine days
 earlier in the manipulated plots than in controls, and soil temperatures
 were on average 0.9 C higher during the snowmelt period of three weeks.
 This resulted in small advances in aboveground phenology, but contrary to
 our expectations, root phenology was unresponsive with root growth
 generally starting before leaf-out. These responses to the snowmelt
 treatment were similar in both plant community types, despite strong
 differences in dominating plant functional types and root properties, such
 as root length and turnover. The lack of a response in root phenology,
 despite warmer soil temperatures and aboveground phenological advances,
 adds evidence that aboveground plant responses might not be directly
 translated to belowground plant responses, and that our understanding of
 factors driving belowground phenology is still limited, although of major
 importance for water, nutrient and carbon cycling.
description: aboveground_phenology'phen' = phenological stage (2=first leaf, 3=first flower)ANS_Air_tempAir temperature data from Abisko Scientific Research Station (for figure S2)root_growth'growth area' is root growth mm per observed (minirhizotron) area (i.e. response variable)root_lengthroot length at the end of the experiment, 'plotnr' is block of two paired plots (Tubes)snowdepthsnowdepth, measured as described in manuscriptsnowmelt_doyday of year of melt-outsoiltemperaturessoil temperatures measured at 10 cm depth with iButtions (see manuscript for details, see Tests.R for de-seasonalisation)TestsR file for statistical tests
DOI: 10.5061/dryad.p01f4
title: Data from: Phylogenomics of Andropogoneae (Panicoideae: Poaceae) of mainland Southeast Asia

description: The grass tribe Andropogoneae is distributed in warm regions around the
 globe but has been poorly studied in mainland Southeast Asia. This is
 particularly true for the cosmopolitan genera Andropogon and
 Schizachyrium, with several species that appear to be narrowly distributed
 in this region. Additionally, lesser-known species in the genera
 Hemisorghum, Kerriochloa, and Pseudosorghum also occur in mainland
 Southeast Asia. A phylogeny is needed to address questions of taxonomy and
 trait evolution. Whole chloroplast genomes of Andropogoneae species and
 two outgroup species of Garnotia (tribe Arundinelleae) were analyzed using
 maximum likelihood (ML) and Bayesian inference (BI). Ancestral character
 states were reconstructed using ML for four morphological characters key
 to Andropogon and Schizachyrium identification. A previously-unidentified
 clade of Southeast Asian endemic taxa is found, including one species
 formerly classified in Andropogon. Other Southeast Asian taxa fall in an
 unresolved grade outside the major radiation of the tribe. Andropogon and
 Schizachyrium are both polyphyletic. Convergent evolution and reversal of
 characters are common throughout Andropogoneae. Addition of species from
 mainland Southeast Asian finds unexpected phylogenetic diversity.
 Southeast Asian Schizachyrium sanguineum forms two separate clades, which
 could reflect cryptic species differentiation, hybridization,
 introgression, or some combination.
description: Arthan_etal_2017_SE_Asian_Andropogoneae