cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4611421
title: Microbial 16S rRNA gene (DNA) and transcripts (cDNA) along a boreal soil-freshwater-estuary continuum

description: This repository stores the processed files of the 16S rRNA sequencing reads (DNA and cDNA) of the La Romaine project, which were processed through the DADA2 pipeline. Files are '.rds' files and/or '.csv' files readable by the open statistical software R. The project is part of the Industrial Research Chair in Carbon Biogeochemistry in Boreal Aquatic systems (CarBBAS Chair) led by Paul A. del Giorgio. Samples were pooled by plate ID and season to be processed by DADA2. The number before each '*_seqtab.rds' file corresponds to a pool. ID details are in "splitdf_new.rds". Raw sequences can be found on SRA under the Bioproject number: PRJNA693020. Intermediate processing files are stored here. And scripts are available on Github. Files are being uploaded as manuscripts are published. Currently available files: 2015-2017: 16S rRNA gene and transcripts (DNA and cDNA) in spring, summer, autumn (shallow sequencing) Part of the manuscript: "Terrestrial connectivity, upstream aquatic history and seasonality shape bacterial community assembly within a large boreal aquatic network". The ISME Journal. 2021.
DOI: 10.5281/zenodo.4611420
title: Microbial 16S rRNA gene (DNA) and transcripts (cDNA) along a boreal soil-freshwater-estuary continuum

description: This repository stores the processed files of the 16S rRNA sequencing reads (DNA and cDNA) of the La Romaine project, which were processed through the DADA2 pipeline. Files are '.rds' files and/or '.csv' files readable by the open statistical software R. The project is part of the Industrial Research Chair in Carbon Biogeochemistry in Boreal Aquatic systems (CarBBAS Chair) led by Paul A. del Giorgio. Samples were pooled by plate ID and season to be processed by DADA2. The number before each '*_seqtab.rds' file corresponds to a pool. ID details are in "splitdf_new.rds". Raw sequences can be found on SRA under the Bioproject number: PRJNA693020. Intermediate processing files are stored here. And scripts are available on Github. Files are being uploaded as manuscripts are published. Currently available files: 2015-2017: 16S rRNA gene and transcripts (DNA and cDNA) in spring, summer, autumn (shallow sequencing) Part of the manuscript: "Terrestrial connectivity, upstream aquatic history and seasonality shape bacterial community assembly within a large boreal aquatic network". The ISME Journal. 2021.
DOI: 10.6073/pasta/6359122c75bafa59d1f17fd4dd0b2011
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-6. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-6 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/2660dd9cb10363271e40e3390b05d6f2
title: Chemistry of rainfall and throughfall from El Verde and Bisley

description: Rain, throughfall, and stream water are collected weekly at the LEF sites listed below. These data sets begin as early as 1983; LTER sampling began in 1988. Rain and throughfall samples are the total catch for the week, and are exposed to field conditions for that time. No event sampling is conducted on a routine basis. Rain samples from WDEV are wet only from an automatically-closing collector that prevents any dry deposition (Aerochem Metrics NADP collector). RCEV and RCB are bulk or always-open collectors that receive dry deposition by sedimentation. All samples are measured for pH and conductivity, and then filtered (pre-combusted Whatman GF/F glass fiber filter) prior to further analysis. From 1983-1994 samples were cooled and returned to the San Juan chemistry laboratory for analysis. During those years, samples for NH4 and NO3 analyses were refrigerated continuously until analysis. Subsamples for NH4 analysis were also preserved with 1 molar H2SO4. From 1994 on, samples for NH4 and NO3 were frozen until analysis, were not acidified, and all analyses were conducted at the University of New Hampshire. Rain and Throughfall Sampling SitesDescriptions of LTER LUQ rain and throughfall weekly sample chemistry data from 1988 onwards. Chemical concentrations are recorded as mg/L or ug/L as appropriate. Values below detection limits are recorded as 1/2 the detection limit. Site Abbreviation Description Comments Rain collector Bisley. RCB Bulk collector. Rain collector El Verde RCEV Bulk collector. Wet/dry El Verde. WDEV. Wet only collector. Throughfall Bisley. TFB=TCB TF bulk 10-collector composite Â Bisley gap. BGAP . TF bulk 10-collector composite
DOI: 10.6073/pasta/0cb989dfd127a6ffa2e530ebc73595f2
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-6. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-6 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/5dc2e5e0effb2606e163d43e7044018e
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 6 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-6 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-6 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.6073/pasta/91f603219b3f82944da2a408ad8a34d1
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.5517/ccdc.csd.cc20zynm
title: CCDC 1876791: Experimental Crystal Structure Determination

description: Related Article: Ebubekir Kandemir, Müjgan Özkütük, Burcu Aydıner, Nurgül Seferoğlu, Hakan Erer, Zeynel Seferoğlu|2021|J.Mol.Struct.|1249|131593|doi:10.1016/j.molstruc.2021.131593
DOI: 10.5517/ccdc.csd.cc25zc5q
title: CCDC 2025173: Experimental Crystal Structure Determination

description: Related Article: Ricardo A. Perlata, Michael T. Huxley, Zhaolin Shi, Yue-Biao Zhang, Christopher J. Sumby, Christian J. Doonan|2020|Chem.Commun.|56|15313|doi:10.1039/D0CC06058E
DOI: 10.6084/m9.figshare.16806781
title: Genotyping data for 16 Russian sheep breeds

description: Genotyping data for the high-density ovine SNP array (600K) for 354 samples of 16 sheep breeds from Russia. The data were produced by Institute of Cytology and Genetics, Novosibirsk, Russia for Tuva, Bubbei, Krasnoyarsk, Altai Mountain, Kulundin, and Baikal breeds while datasets for Lezgin, Karachaev, Karakul, Edilbaev, Romanov, Russian Longhaired, Groznensk, Salsk, Osetin and Volgograd breeds were produced by L.K. Ernst Federal Research Center for Animal Husbandry, Podolsk, Russia<br>
DOI: 10.6084/m9.figshare.16804486
title: PennCNV formatted LRR/BAF data for 354 animals

description: The dataset represents the PennCNV-formatted LRR/BAF data for 577,206 autosomal SNP markers (Ovine Infinium® HD SNP BeadChip) genotyped in 354 animals from 16 Russian sheep breeds. The samples names correspond to individuals’ IDs in Table S1 from Igoshin et al. Animal Genetics (2021). Genotyping data for the high-density ovine SNP array (600K) for 354 samples of 16 sheep breeds from Russia. <br>The data were produced by Institute of Cytology and Genetics, Novosibirsk, Russia for Tuva, Bubbei, Krasnoyarsk, Altai Mountain, Kulundin, and Baikal breeds while the data for Lezgin, Karachaev, Karakul, Edilbaev, Romanov, Russian Longhaired, Groznensk, Salsk, Osetin and Volgograd breeds were produced by L.K. Ernst Federal Research Center for Animal Husbandry, Podolsk, Russia<br>
DOI: 10.6084/m9.figshare.16804486.v1
title: PennCNV formatted LRR/BAF data for 354 animals

description: The dataset represents the PennCNV-formatted LRR/BAF data for 577,206 autosomal SNP markers (Ovine Infinium® HD SNP BeadChip) genotyped in 354 animals from 16 Russian sheep breeds. The samples names correspond to individuals’ IDs in Table S1 from Igoshin et al. Animal Genetics (2021). Genotyping data for the high-density ovine SNP array (600K) for 354 samples of 16 sheep breeds from Russia. <br>The data were produced by Institute of Cytology and Genetics, Novosibirsk, Russia for Tuva, Bubbei, Krasnoyarsk, Altai Mountain, Kulundin, and Baikal breeds while the data for Lezgin, Karachaev, Karakul, Edilbaev, Romanov, Russian Longhaired, Groznensk, Salsk, Osetin and Volgograd breeds were produced by L.K. Ernst Federal Research Center for Animal Husbandry, Podolsk, Russia<br>
DOI: 10.6073/pasta/8393915ab666cf25f7aabbb70b48c1af
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/c6f00e5c10e4149151f889e5e7df3d42
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/fc843e2aa9dcc05916a3c5fe8d1fac20
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at 10 cm at CSIS Block-7. Collection of soil volumetric water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured at 10 cm depth at 3 locations at each of the 4 plots per block. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded every 30 minutes at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/0c4cabca919c90185b999a233aa54fac
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-7. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-7 site. This is an ONGOING dataset.
DOI: 10.6073/pasta/e65670184549cb00decc4d46907adac5
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: Daily summary data: 2013 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-7 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.6073/pasta/b35ca66b0bd8b10da6764ccb3b0ab341
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 7 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-7 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-7 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.6073/pasta/5c4293709516fb87d57691ad64ddf836
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 30-minute summary data: 2017 - ongoing

description: This data package contains 30-minute air temperature, relative humidity, and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-1 met station. Average air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively. This is an ONGOING dataset.
DOI: 10.5281/zenodo.5567370
title: Dependency Management Bots in Open-Source Systems - Prevalence and Adoption

description: This is a re-analysis package for the paper: Dependency Management Bots in Open-Source Systems - Prevalence and Adoption. The package includes scripts and processed data collected from GitHub about five investigated dependency management bots: Dependabot, Depfu, Greenkeeper, Pyup and Renovate.
DOI: 10.5281/zenodo.4974218
title: Dependency Management Bots in Open-Source Systems - Prevalence and Adoption

description: This is a re-analysis package for the paper: Dependency Management Bots in Open-Source Systems - Prevalence and Adoption. The package includes scripts and processed data collected from GitHub about five investigated dependency management bots: Dependabot, Depfu, Greenkeeper, Pyup and Renovate.
DOI: 10.6073/pasta/9670f271901e112ded3c973648aeb38c
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 5-minute summary wind and air temperature data: 2013 - ongoing

description: This data package contains 5-minute air temperature and wind summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-8 met station. Average air temperature, wind speed, and wind direction are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This is a subset of baseline weather data collected at the 15 Jornada Basin LTER CSIS study blocks, New Mexico. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. The met station variables measured include air temperature, precipitation, relative humidity, wind direction, wind speed. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.5281/zenodo.5567417
title: V2X Security Threats for Cluser-based Evaluation

description: These datasets are obtained from the datasets in OID. Those datasets were filtered in order to obtain only the data collected by the vehicles composing the clusters as shown in the paper Evaluation of VANET Datasets in context of an Intrusion Detection System published in 29th International Conference on Software, Telecommunications and Computer Networks (SoftCOM 2021). The data from the multiple maps were then grouped to compose the training dataset. The test dataset is similar to the one in the original map 7 datasets. Additionally, the datasets were converted into ARFF format used by weka. The conversion to CSV can easily be made by deleting the header.
DOI: 10.5281/zenodo.5567416
title: V2X Security Threats for Cluser-based Evaluation

description: These datasets are obtained from the datasets in OID. Those datasets were filtered in order to obtain only the data collected by the vehicles composing the clusters as shown in the paper Evaluation of VANET Datasets in context of an Intrusion Detection System published in 29th International Conference on Software, Telecommunications and Computer Networks (SoftCOM 2021). The data from the multiple maps were then grouped to compose the training dataset. The test dataset is similar to the one in the original map 7 datasets. Additionally, the datasets were converted into ARFF format used by weka. The conversion to CSV can easily be made by deleting the header.
DOI: 10.6073/pasta/b0311fe46325d27d48241988178b84c5
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 8 meteorological station: 1-hour summary data: 2017 - ongoing

description: This data package contains hourly air temperature, relative humidity, wind speed, wind direction, and precipitation summary data from Jornada Basin LTER Cross Scale Interactions Study (CSIS) Block-8 met station. Air temperature, relative humidity, wind speed, wind direction, and precipitation are measured and calculated at an automated meteorological station connected to a 900 MHz spread spectrum wireless network. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Measurements are aggregated at intervals of 5, 30, 60 minutes and daily, with precipitation additionally provided with 1 second aggregation during precipitation events. Precipitation is not measured at Block 1 and Block 12 because of proximity to Block 2 and Block 13, respectively . This is an ONGOING dataset.
DOI: 10.15468/fvkre3
title: Ancylogastra, a new genus of Afrotropical Crambinae, with descriptions of seven new species (Lepidoptera, Pyraloidea, Crambidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bassi, Graziano, Sáfián, Szabolcs, Léger, Théo, Müller, Günter C., Kravchenko, Vasiliy D., Poltavsky, Alexander N. (2021): Ancylogastra, a new genus of Afrotropical Crambinae, with descriptions of seven new species (Lepidoptera, Pyraloidea, Crambidae). Zootaxa 5052 (1): 42-60, DOI: https://doi.org/10.11646/zootaxa.5052.1.2