cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14763147.v1
title: Avian eggshell thickness indices and phylogenetic analysis

description: The data and R scripts used in the Ibis paper entitled "Global diversity and adaptations of avian eggshell thickness indices" by Attard and Portugal 2022 are within the zipped file. A description of each file is provided below. <br> <strong>Species eggshell thickness and life history data</strong> The excel file "shell_thickness_species_data" contains species-specific eggshell thickness (d) values and all other information (e.g., egg width, egg length, shell mass) from Schönwetter’s Handbuch der Oologie tables. This tab is saved as a csv file for the R scripts. All sources used to extract life-history traits are in the column "source_lifehistory". <br> The "life history sources" tab in the excel file lists all references used to find life-history trait data. <br> <strong>R scripts for Phylogenetic Comparative Analysis</strong> There are three R scripts that perform perform phylogenetic comparative analysis across all birds in the dataset, and separately for passerines and non-passerines. This includes phylogenetic signal (based on lamdba values) and PGLS. Several supplementary figures are also produced using the script for all birds. <br> <strong>R script for figures</strong> The R script entitled "R Markdown_Shell thickness figures" contains code to create all remaining figures used in this paper, including phylogenetic trees. <br> <strong>Species eggshell thickness phylogeny files:</strong> The nexus (nex) tree file (species_shell_thickness_phylogeny_original.nex) contains avian phylogenetic trees constructed online (http://www.birdtree.org) using the primary backbone tree of Hackett <em>et al</em>. 2008. One thousand trees were constructed, and comprise of all species included in this study. <br> The newick (nwk) tree file (species_eggshell_thickness_phylogeny.nwk) is the maximum clade credibility tree generated from the "Rmarkdown_Phylogenetic Comparative Analysis_all birds" script. This tree is used for phylogenetic comparative analysis and to create the phylogenetic tree diagrams in the paper.
DOI: 10.17632/r844v3dzt3
title: Dataset of Digital Business from 1978 to 2019

description: The digital business research & publication dataset, which was indexed by Scopus from 1978 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.6084/m9.figshare.14169959.v1
title: README_BinaryDepletionMatrices.txt

description: README for the binary depletions matrices containing 18 files of significantly depleted genes using different datasets and batch correction methods.
DOI: 10.6084/m9.figshare.23608308.v1
title: ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells (CD8 TIL), version 1

description: ProjecTILs human reference atlas of CD8+ tumor-infiltrating T cells, generated by semi-supervised STACAS integration of scRNA-seq datasets spanning 7 cancer types. <br> The dataset is available as a Seurat object, with functional cluster, sample of origin and several other measurement for each cell stored in the object metadata. <br> The object can be loaded into an R session using the readRDS() function, and directly used as a reference atlas for ProjecTILs (Andreatta et al. 2021). <br> Code to reproduce the atlas can be found here: https://github.com/carmonalab/CD8_human_TIL_atlas_construction
DOI: 10.6084/m9.figshare.1375200.v1
title: Tenthredo eburneifrons W.F. Kirby, 1882, figures of several specimens

description: <strong><em>Tenthredo (Tenthredella) eburneifrons</em></strong> W. F. Kirby, 1882<br>= <em>Tenthredo eburneifrons</em> W. F. Kirby, 1882: 306, ♀ ; type locality: Amoor<br>= <em>Tenthredo lichtwardti</em> Konow, 1899: 365-366, ♀ ; type locality: Ardennes The species is very rare in Europe, but more common in the Eastern Palaearctic (Korea, Primorskij Kray). In Europe it has been recorded from Belgium, Germany, Finland, and Latvia. A record for France is based on an error. In European females the abdomen is black (like in the types of lichtwardti), whereas in eastern specimens it is usually more or less reddish brown in the middle (like in the type of <em>eburneifrons).</em> References: Blank, S. M.; Taeger, A. 1998: Comments on the taxonomy of Symphyta (Hymenoptera) (Preliminary studies for a catalogue of Symphyta, part 4). Pp. 141–174. In: Taeger, A.; Blank, S. M. (eds): Pflanzenwespen Deutschlands (Hymenoptera, Symphyta). Kommentierte Bestandsaufnahme. - Goecke & Evers, Keltern. Kirby, W. F. 1882: List of Hymenoptera with Descriptions and Figures of the Typical Specimens in the British Museum. 1. Tenthredinidae and Siricidae. - London, by order of the Trustees 1: 1-450 Konow, F. W. 1899: Neue Tenthredinidae. - Entomologische Nachrichten (Herausgegeben von Dr. F. Karsch), Berlin 25(23): 359–366 Photos were taken at the SDEI with a Leica DFC 495 digital camera and M205 C microscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3.
DOI: 10.15151/esrf-es-2052615491
title: Mechanisms of fast CO2 fixation reaction by enoyl-CoA carboxylases/reductase

description: Carbon dioxide (CO2) is an atmospheric greenhouse gas that feeds all life, plays a critical role in global warming, and could constitute an inexpensive carbon source for future sustainable industries. While synthetic chemistry lacks suitable catalysts to functionalize carbon dioxide in mild reaction conditions, autotrophs do it constantly, and thus there is increasing interest in exploiting the CO2-fixation mechanisms offered by nature. In this exchange proposal, we propose fast time-resolved structural-dynamics studies of one of the fastest CO2-fixation enzymes, enoyl-CoA carboxylase/reductase (ECR), using ambient temperature serial X-ray crystallography on Beamline ID29, ESRF, which achieves 10μs resolution. This study will reveal details of the enzyme subunit coupling as well as the enzyme-substrate interactions to correlate the structural and functional states of the enzyme during fixation and pave the way for faster biomolecule productions using engineered C-cycling enzymes.
DOI: 10.17632/4wyymrcpyz
title: PSFD-Musa DATASET

description: Three dataset folders are presented here that include the Banana variety, Banana Disease, and Banana Deficiency. The dataset of "banana variety" consists of 7 classes (namely: Malbhog fruit (Musa assamica), Malbhog leaf (Musa assamica), Jahaji fruit (Musa chinensis), Jahaji stem (Musa chinensis), Jahaji leaf (Musa chinensis), Kachkol fruit (Musa paradisiaca L.), Bhimkol leaf (M. Balbisiana Colla)). The dataset of "banana disease" consists of 7 classes (namely: Bacterial Soft Rot, Banana Fruit Scarring Beetle, Black Sigatoka, Yellow Sigatoka, Panama disease, Banana Aphids, and PseudoStem Weevil).  The dataset of "banana deficiency" consists of 1 class (namely: Potassium deficiency). The images are resized into 256 x 256 dimensions using Python OpenCV programming.  As the raw image data are very less, therefore we have augmented it and now the dataset consists of about 8000+ image data. The augmentation is performed using Python programming. All the images are in RGB and .jpg format.
DOI: 10.17632/d9rkt67hr7
title: LINF_140006900

description: BBIP10-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/z4zpr8zghf
title: Impact of high-molecular weight hyaluronic acid on the gene expression of rabbit Achilles tenocytes in vitro

description: For three rabbit donors (denoted as R5, R8, and R11 in the Excel sheet), we present the impact of high-molecular weight hyaluronic acid (HA; Mw = 1.01 – 1.80 MDa) daily supplementation to Achilles tenocytes in vitro at time points 3 days, 7 days, and 14 days against the control which received no HA, but had otherwise the same conditions. Gene expression of target genes Biglycan, Decorin, Aggrecan, Collagen 1A1, Collagen 1A2, Collagen 3, LOX, IL-6, TNF-alpha, PAR-2, ALOX-15, Tenascin-C, Tenomodulin, Mohawk, alpha-SMA, TIMP 1, MMP 2, MMP 9, and ki67 are presented; the data were normalized to gene expression of corresponding cell culture without HA supplementation.
DOI: 10.6084/m9.figshare.7890185.v1
title: gVCF_HG01354

description: 1000 Genomes gVCF mapped to hs37d5 for HG01354. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/6gtybjgj9s
title: Data for: Lower crustal foundering drove the uplift of southern Tibet during the Paleocene

description: The data in this dataset are compiled from the literature. These data are used to constrain the evolution of crustal thickness, crustal density and lithospheric geotherm of the Gangdese arc in southern Tibetan Plateau. Based on these results, we propose that lower crustal foundering drove the uplift of the Gangdese arc during the Paleocene, independent of the India-Asia collision.
Data S1. The major oxide and trace element compositions of the Late Cretaceous-Cenozoic magmatic rocks from the Gangdese arc.
Data S2. The metamorphic conditions and ages of rocks from the middle and lower crust of the Gangdese arc.
Data S3. Mafic rocks from the Gangdese arc and the melting temperature and pressure of their mantle source.
Data S4. The elevation data obtained by paleoaltimetry in the Linzhou and Namling basins.
DOI: 10.6084/m9.figshare.12095658.v4
title: Data-driven Discovery of 3D and 2D Thermoelectric Materials

description: <b> </b>In this work, we first perform a systematic search for high-efficiency three-dimensional (3D) and two-dimensional (2D) thermoelectric materials by combining semiclassical transport techniques with density functional theory (DFT) calculations and then train machine-learning models on the thermoelectric data. Out of 36000 three-dimensional and 900 two-dimensional materials currently in the publicly available JARVIS-DFT database, we identify 2932 3D and 148 2D promising thermoelectric materials using a multi-steps screening procedure, where specific thresholds are chosen for key quantities like bandgaps, Seebeck coefficients and power factors. We compute the Seebeck coefficients for all the materials currently in the database and validate our calculations by comparing our results, for a subset of materials, to experimental and existing computational datasets. We also investigate the effect of chemical, structural, crystallographic and dimensionality trends on thermoelectric performance. We predict several classes of efficient 3D and 2D materials such as Ba(MgX)<sub>2</sub> (X=P,As,Bi), X<sub>2</sub>YZ<sub>6</sub> (X=K,Rb, Y=Pd,Pt, Z=Cl,Br), K<sub>2</sub>PtX<sub>2</sub>(X=S,Se), NbCu<sub>3</sub>X<sub>4 </sub>(X=S,Se,Te), Sr<sub>2</sub>XYO<sub>6 </sub>(X=Ta, Zn, Y=Ga, Mo), TaCu<sub>3</sub>X<sub>4 </sub>(X=S, Se,Te), and XYN (X=Ti, Zr, Y=Cl, Br). Finally, as high-throughput DFT is computationally expensive, we train machine learning models using gradient boosting decision trees (GBDT) and classical force-field inspired descriptors (CFID) for n-and p-type Seebeck coefficients and power factors, to quickly pre-screen materials for guiding the next set of DFT calculations. The dataset and tools are made publicly available at the websites: https://www.ctcms.nist.gov/~knc6/JVASP.html , https://www.ctcms.nist.gov/jarvisml/ and https://jarvis.nist.gov/ .<b></b>
DOI: 10.6084/m9.figshare.24161229.v3
title: Supplementary Information, Supplementary Tables, R Code, FASTA file and OTU tables from DNA metabarcoding, additional data tables for the publication "Shift in diet composition of a riparian predator along a stream pollution gradient" by Huszarik et al. 2024, doi:10.1098/rspb.2024.2104

description: Flying insects that emerge from streams are important food sources for insectivores living on the shore, such as spiders. However, chemical pollution present in the water can affect these insects and the spiders relying on them. In this study we investigated changes in the diet of spiders near streams exposed to different levels of wastewater and pesticide pollution. We found slight changes in the flying insect community, and found that spiders consumed more midges and fewer other flies at more polluted streams. This shows that effects of stream pollution can induce changes in the food web, including for terrestrial organisms.
DOI: 10.6084/m9.figshare.24787773.v1
title: 3D STL models of Human Airways for CFD and CFPD simulations.

description: This is a 3D STL dataset of human airways ready for a CFD or CFPD simulation. It is suitable for both OpenFOAM and StarCCM+. This dataset is a comprehensive representation of a larger database that comprises 420 human respiratory tract 3D models. data.txt is a list with the details of what represents each group in the folders.
DOI: 10.6084/m9.figshare.3811281.v1
title: structural variant, SNP and indel calls used for GWAS in PLINK format

description: All structural variant, SNP and indel calls used for GWAS.<br>All filtered to have minor allele count at least 5, and in PLINK format.<br>File: Schizosaccharomyces-pombe-variants-plink-minor-allele-count5-Jeffares2016.tar.gz<br><br>
DOI: 10.17608/k6.auckland.13151066.v1
title: Multifunctional Network Analysis

description: Datasets containing measured environmental functions, environmental characteristics and species traits data divided into functional clusters. Data collected from an intertidal sandflat.
DOI: 10.17632/dzpmvpm3tr
title: Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation. Ye et al.

description: Original data of gels and blots for the manuscript, "Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation", submitted to Molecular Cell.
DOI: 10.17632/vj4w5zfvty
title: Excel calculation sheet for Biotite from EPMA data (Li et al. 2020, Lithos)

description: Excel spreadsheet for calculating biotite formula from EMPA data. Li X., Zhang C., Behrens H., Holtz F. (2020) Calculating biotite formula from electron microprobe analysis data using a machine learning method based on principal components regression. Lithos, 356-357: 105371. https://doi.org/10.1016/j.lithos.2020.105371
DOI: 10.25381/cput.21551934.v1
title: Raw data for the Master's thesis: The effect of membrane characteristics on the performance of membrane distillation system for the treatment of hypersaline brine

description: Ethical Clearance Form Number: 2019FEREC-STD-73 <br> Excel spreadsheet titled: "Experimental data- Index" provides a guide for all data sets uploaded,
DOI: 10.25405/data.ncl.27335709.v1
title: Test Hypothesised Mediation Model Data - specifically, investigating whether intolerance of uncertainty, family accommodation, and reassurance seeking, are multiple serial mediators in the relationship between attachment anxiety and OCD checking symptoms.

description: Two hundred and fifty adult participants, recruited from the general community, completed a cross-sectional online Qualtrics survey which included the Experiences in Close Relationships Scale-Revised (ECR-R), the Intolerance of Uncertainty Scale – 12 item (IUS-12), the Attachment Behaviours Questionnaire (under development/unpublished), the Family Accommodation Scale-Patient Version (FAS-PV), measures of reassurance seeking (Reassurance Seeking Scale/RSS and adapted Reassurance Seeking Questionnaire (ReSQ)), and the Obsessive-Compulsive Inventory-Revised (adapted to include 5 additional checking items from the original OCI).The data was used to test a hypothesised mediation model - specifically, investigating whether intolerance of uncertainty, family accommodation, and reassurance seeking, are multiple serial mediators in the relationship between attachment anxiety and OCD checking symptoms.
DOI: 10.6084/m9.figshare.7308356.v2
title: Supplementary files for the manuscript "Phonocardiography and photoplethysmography with simple Arduino setups to support interdisciplinary STEM education"

description: We show and analyze several ways how heart function can be monitored by studying photoplethysmograph and phonocardiograph signals with very simple Arduino-based setups in high-school or university education. We have carefully analyzed and demonstrated the problems of widely used solutions and we show the technically correct ways which are surprisingly rare and particularly important in high quality STEM education. See the references for additional information and videos.Published in IEEE Access (http://doi.org/10.1109/ACCESS.2019.2926519)<br>
DOI: 10.6084/m9.figshare.21523539.v1
title: Traffic and roadkill dataset

description: Traffic, road attributes, landscape and roadkill dataset used to analyze traffic effects on wildlife roadkill.
DOI: 10.6084/m9.figshare.5010674.v1
title: Yukon Marine Life Species Taxonomy Tree

description: Taxonomic classification of marine species identified photographically on the artificial reef Yukon as of 5-15-17.
DOI: 10.6084/m9.figshare.5435983.v1
title: Music.Medieval.MIDI

description: A collection of pieces of polyphonic music MIDI coded. This group is specifically for Medieval music.These files are intended to hear the actual sound of each piece of music. The text files behind these sonic files are analyzed and results are presented in DOI: 10.6084/m9.figshare.5435953 .You won't be able to directly ear music from these files. But you can download and open them with an audio-player software. To see the text representing the music you ear, open the file pretending it is a text-file.
DOI: 10.6084/m9.figshare.7885064.v1
title: gVCF_HG02885

description: 1000 Genomes gVCF mapped to hs37d5 for HG02885. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.13553516.v1
title: Supplementary Material for: Event-Based but Not Time-Based Prospective Memory Is Related to Oral Health in Late Adulthood

description: <b><i>Background:</i></b> Most evidence now indicates that cognitive function is related to poorer oral health in late adulthood, but that this relationship is not invariant across specific cognitive domains. Prospective memory (PM) is a core memory skill that refers to memory for future intentions and is known to be related to the formation of habits such as tooth flossing. However, the relationship between PM and oral health has been subject to only limited empirical study. <b><i>Objective:</i></b> The two studies reported in this paper were designed to test whether PM is related to oral health in older adults of varying vulnerability status. <b><i>Methods:</i></b> Study 1 sampled community-dwelling older adults (<i>N</i> = 172) living independently in the community; Study 2 sampled older adults living in a retirement village (<i>N</i> = 32). Participants in both studies were asked to complete a behavioural measure of PM, with their oral health indexed via self-report (Study 1) or an objective oral health exam (Study 2). <b><i>Results:</i></b> In both studies, relationships emerged between event-based PM and oral health, with Study 2 showing that these relationships were specific to oral health measures of plaque and calculus. <b><i>Conclusions:</i></b> Older adults are particularly vulnerable to dental pathology, with important implications for their broader health and well-being. By showing that there is a relationship between oral health and a particular type of PM, this work will have potential implications for the development of more effective interventions focused on enhancing oral health outcomes in this group, such as those focused on strengthening habit formation.
DOI: 10.6084/m9.figshare.25284775.v1
title: A Comprehensive Dataset on Bangladeshi University Students' Mental Health

description: This dataset comprises mental health data from 1977 Bangladeshi university students across 15 top universities, collected from November to December 2023 using Google Forms. It includes assessments of academic anxiety, stress, and depression using widely used psychometric scales. The structured questionnaire covers sociodemographic variables and their associations, facilitating comprehensive analysis. Statistical analysis yielded satisfactory internal consistency (Cronbach’s alpha: 0.79), with anonymized participant data valuable for policymakers.
DOI: 10.6084/m9.figshare.28879115.v1
title: Data for assessing relation among niche component in aquatic vertebrates species

description: This archive contains two datasets used to investigate species coexistence and trophic ecology, submitted in support of research.<b>Dataset 1: bd_coexistence.xlsx</b> contains data on species coexistence, including niche overlap indices and species traits across different niche dimensions. Key variables include species identification, niche overlap values, population width, and various niche metrics (IS, WIC, BIC, TNW) along with their corresponding indices. Taxonomic information (Family, Order, Class) is also included.<b>Dataset 2: bd_isotopes_sp.xlsx</b> provides stable carbon (<sup>13</sup>C) and nitrogen (<sup>1</sup><sup>5</sup>N) isotope ratios from various species, along with associated ecological and biological information. Data includes a variety of aquatic vertebrate species from different families and orders, with isotope measurements taken across different seasons and locations. Trophic niche metrics such as total niche width (TNW), within-individual component (WIC), between-individual component (BIC), and the ratio of WIC to TNW are included, as well as an individual specialisation metric (EI).
DOI: 10.17632/t9thrvwfys
title: glow curve

description: The data is part of the study of thermoluminescent peaks in quartz. These data are the result of measurements of the quartz signal extracted from sand after chemical treatment. With these data, it is possible to obtain spectra to identify the characteristic peaks of quartz, and they can be used to fit a mathematical model
DOI: 10.6084/m9.figshare.11478414.v1
title: Habitat Suitability Model for Clapper Rail

description: Raster model of breeding habitat suitability for Clapper Rails within the contiguous U.S. Model development described by Stevens and Conway (2020).<br> These data are supplemental materials for the following manuscript: <br> Stevens, B.S., and C.J. Conway. 2020. Mapping habitat suitability at range-wide scales: spatially-explicit distribution models to inform conservation and research for marsh birds. Conservation Science and Practice 2:in press.
DOI: 10.6084/m9.figshare.28594017.v1
title: Additional file 3 of Summarizing attributable factors and evaluating risk of bias of Mendelian randomization studies for Alzheimer’s dementia and cognitive status: a systematic review and meta-analysis

description: Additional file 3. Table S3. Study characteristics of included MR studies for AD.
DOI: 10.17632/jdjdpwrvf4
title: Fotos antiguas UCLM Campus Albacete

description: Fotos antiguas del edificio de la Escuela Politécnica Superior de Albacete obtenidas en el año 2000
DOI: 10.6084/m9.figshare.24278101.v1
title: One-year dataset of hourly air quality parameters from 100 air purifiers used in China residential buildings

description: Household air purifiers have been widely used as an effective approach to improving indoor air quality. Air purifiers can automatically record indoor air quality parameters, providing valuable data resources for in-depth data-driven analysis. This work presents a one-year hourly indoor air quality dataset collected by household air purifiers in 100 residential homes in 18 provinces across 4 different climate zones in China. The data were collected from July 1, 2021, to July 1, 2022. The concentrations of formaldehyde, PM<sub>2.5</sub>, TVOC, temperature, relative humidity, on/off status and the airflow rate of air purifiers during operations were recorded hourly.