cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15696845
title: Embedded Deep Learning for Bio-hybrid Plant Sensors to Detect Increased Heat and Ozone Levels

description: We present a bio-hybrid environmental sensor system that integrates natural plants and embedded deep learning for real-time, on-device detection of temperature and ozone level changes. Our system, based on the low-power \textit{PhytoNode} platform, records electric differential potential signals from \textit{Hedera helix} and processes them onboard using an embedded deep learning model.  We demonstrate that our sensing device detects changes in temperature and ozone with good sensitivity of up to 0.98.  Daily and inter-plant variability, as well as limited precision, could be mitigated by incorporating additional training data, which is readily integrable in our data-driven framework.  Our approach also has potential to scale to new environmental factors and plant species. By integrating embedded deep learning onboard our biological sensing device, we offer a new, low-power solution for continuous environmental monitoring and potentially other fields of application.

 

Data repository for our paper "Embedded Deep Learning for Bio-hybrid Plant Sensors to Detect Increased Heat and Ozone Levels", submitted to the IEEE Sensors 2025 in Canada, Vancouver. For more information, please refer to the paper.
DOI: 10.5281/zenodo.15696844
title: Embedded Deep Learning for Bio-hybrid Plant Sensors to Detect Increased Heat and Ozone Levels

description: We present a bio-hybrid environmental sensor system that integrates natural plants and embedded deep learning for real-time, on-device detection of temperature and ozone level changes. Our system, based on the low-power \textit{PhytoNode} platform, records electric differential potential signals from \textit{Hedera helix} and processes them onboard using an embedded deep learning model.  We demonstrate that our sensing device detects changes in temperature and ozone with good sensitivity of up to 0.98.  Daily and inter-plant variability, as well as limited precision, could be mitigated by incorporating additional training data, which is readily integrable in our data-driven framework.  Our approach also has potential to scale to new environmental factors and plant species. By integrating embedded deep learning onboard our biological sensing device, we offer a new, low-power solution for continuous environmental monitoring and potentially other fields of application.

 

Data repository for our paper "Embedded Deep Learning for Bio-hybrid Plant Sensors to Detect Increased Heat and Ozone Levels", submitted to the IEEE Sensors 2025 in Canada, Vancouver. For more information, please refer to the paper.
DOI: 10.21227/8dqc-1d45
title: "pos dataset"

description: "pos tagged dataset"
DOI: 10.15468/dl.wbdrq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atherina boyeri Risso, 1810",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((54.7419 -4.6698,55.1382 -5.0908,55.1382 -3.2684,55.0126 -3.2506,54.7023 -3.7189,54.8472 -4.0798,54.7419 -4.6698))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056650-250525065834625/datasets/export for details.
DOI: 10.15468/dl.828r5m
title: Occurrence Download

description: A dataset containing 301045 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dactylorhiza majalis (Rchb.) P.F.Hunt & Summerh."
 ]
}

 The dataset includes 301045 records from 842 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056617-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqk7ph
title: Occurrence Download

description: A dataset containing 1228 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivis télémétriques des pinnipèdes dans les TAAF du Centre d'Etudes Biologiques de Chizé - Suivis télémétriques des Otaries des Kerguelen par le Centre d'Etudes Biologiques de Chizé"
 ]
}

 The dataset includes 1228 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232554-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.no0job
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jatropha sympetala S.F.Blake & Standl.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006459-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqtess
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia oxyanthera Warb."
 ]
}

 The dataset includes 193 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055921-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10394273
title: GitSense

description: A new version of GitSense. Based on Version 3 which has added a ReadMe, code comments to guide others, and a CSV file to describe important statistical features used in GitSense, we add the GPT prompt examples tried in our experiments.
DOI: 10.15468/dl.9aavc2
title: Occurrence Download

description: A dataset containing 2996 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes d'Emmanuel SECHET"
 ]
}

 The dataset includes 2996 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232573-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10968171
title: GitSense

description: A new version of GitSense. Based on Version 3 which has added a ReadMe, code comments to guide others, and a CSV file to describe important statistical features used in GitSense, we add the GPT prompt examples tried in our experiments.
DOI: 10.15468/dl.5c8wnu
title: Occurrence Download

description: A dataset containing 57382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 12.7472651117039",
 "DecimalLongitude is less than 12.7503246648883",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 57382 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014260-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xvhyp
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 81 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016619-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7vcqn
title: Occurrence Download

description: A dataset containing 99643 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-79.66873 43.41431,-78.93631 43.63403,-79.06013 44.01672,-79.84726 43.82629,-79.66873 43.41431))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2015-2021"
 ]
}

 The dataset includes 99643 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249702-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pod25o
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Year 1979-2019",
 "HasCoordinate is true",
 "TaxonKey is Adiantum sinuosum Gardner",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016622-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrce9x
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenodon egenus (J.F.Macbr.) D.B.O.S.Cardoso & H.C.Lima"
 ]
}

 The dataset includes 32 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154923-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqw7bd
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Iliacantha liodactylus Rathbun, 1898",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 293 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055944-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvmw8s
title: Occurrence Download

description: A dataset containing 5276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caiman crocodilus (Linnaeus, 1758)"
 ]
}

 The dataset includes 5276 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241058-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dk0kfo
title: Occurrence Download

description: A dataset containing 853 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Year 1979-2019",
 "HasCoordinate is true",
 "TaxonKey is Adiantum tetraphyllum Humb. & Bonpl. ex Willd.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 853 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016625-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32ugdj
title: Occurrence Download

description: A dataset containing 3436 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cyornis rufigastra (Raffles, 1822)"
 ]
}

 The dataset includes 3436 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055923-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxqmej
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cordia valenzuelana A.Rich."
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154924-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqhxem
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tarsiidae"
 ]
}

 The dataset includes 188 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246328-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cgvqm
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea natalia Hammel"
 ]
}

 The dataset includes 53 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154925-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.remidu
title: Occurrence Download

description: A dataset containing 4472584 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Peru"
 ]
}

 The dataset includes 4472584 records from 1503 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016615-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x72r4f
title: Occurrence Download

description: A dataset containing 9331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Spea multiplicata (Cope, 1863))"
 ]
}

 The dataset includes 9331 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003967-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2024-04.3090689/2557297
title: Data for EMSL Project 51287 from April 2024
DOI: 10.5281/zenodo.14506500
title: Data and Code for "Naturalized tree species in the Anthropocene: Climate surpasses geography in shaping beta diversity"

description: Aim: Assessing to what degree the spread of naturalized alien tree species has changed their taxonomic and phylogenetic beta diversities globally, and whether the factors driving those diversity patterns have shifted.

Location: Globe.

Time period: From the 15th century to the present time.

Major taxa studied: Tree.

Methods: For 1,844 naturalized tree species, we compiled data on their native and naturalized ranges and assessed the magnitude of changes in taxonomic and phylogenetic beta diversity resulting from the global spread of these alien species. Additionally, we examined the relative contributions of climatic factors, geographic distance, and trade to their beta diversity before and after human-mediated spread.

Results: The spread of naturalized tree species has reduced their beta diversity of the 50 subcontinental TDWG-2 regions globally, i.e., causing substantial biotic homogenization in naturalized tree floras. Notably, we found that distant regions have become more similar in species composition than regions that are adjacent to or share a boundary with each other. Although a positive relationship between taxonomic and phylogenetic similarities was observed, taxonomic similarity showed a tendency for stronger changes. Geographic distance was the most influential factor in shaping both taxonomic similarity before naturalization, while temperature became dominant after naturalization. Contrary to expectations, trade intensity had only a marginal effect on both taxonomic and phylogenetic similarity after naturalization.

Main conclusions: Our study highlights the widespread expansion of naturalized tree species and their contribution to global biotic homogenization in naturalized tree floras. The results emphasize the diminished role of geographic distance and the growing influence of temperature in shaping species similarities after naturalization. Projections of intensifying human activities and ongoing climate change suggest that the composition of naturalized tree species is likely to undergo further reshuffling in the future, potentially reshaping the fundamental spatial structure of the biosphere.
DOI: 10.5281/zenodo.14506499
title: Data and Code for "Naturalized tree species in the Anthropocene: Climate surpasses geography in shaping beta diversity"

description: Aim: Assessing to what degree the spread of naturalized alien tree species has changed their taxonomic and phylogenetic beta diversities globally, and whether the factors driving those diversity patterns have shifted.

Location: Globe.

Time period: From the 15th century to the present time.

Major taxa studied: Tree.

Methods: For 1,844 naturalized tree species, we compiled data on their native and naturalized ranges and assessed the magnitude of changes in taxonomic and phylogenetic beta diversity resulting from the global spread of these alien species. Additionally, we examined the relative contributions of climatic factors, geographic distance, and trade to their beta diversity before and after human-mediated spread.

Results: The spread of naturalized tree species has reduced their beta diversity of the 50 subcontinental TDWG-2 regions globally, i.e., causing substantial biotic homogenization in naturalized tree floras. Notably, we found that distant regions have become more similar in species composition than regions that are adjacent to or share a boundary with each other. Although a positive relationship between taxonomic and phylogenetic similarities was observed, taxonomic similarity showed a tendency for stronger changes. Geographic distance was the most influential factor in shaping both taxonomic similarity before naturalization, while temperature became dominant after naturalization. Contrary to expectations, trade intensity had only a marginal effect on both taxonomic and phylogenetic similarity after naturalization.

Main conclusions: Our study highlights the widespread expansion of naturalized tree species and their contribution to global biotic homogenization in naturalized tree floras. The results emphasize the diminished role of geographic distance and the growing influence of temperature in shaping species similarities after naturalization. Projections of intensifying human activities and ongoing climate change suggest that the composition of naturalized tree species is likely to undergo further reshuffling in the future, potentially reshaping the fundamental spatial structure of the biosphere.
DOI: 10.5281/zenodo.15233187
title: Data and Code for "Naturalized tree species in the Anthropocene: Climate surpasses geography in shaping beta diversity"

description: Aim: Assessing to what degree the spread of naturalized alien tree species has changed their taxonomic and phylogenetic beta diversities globally, and whether the factors driving those diversity patterns have shifted.

Location: Globe.

Time period: From the 15th century to the present time.

Major taxa studied: Tree.

Methods: For 1,844 naturalized tree species, we compiled data on their native and naturalized ranges and assessed the magnitude of changes in taxonomic and phylogenetic beta diversity resulting from the global spread of these alien species. Additionally, we examined the relative contributions of climatic factors, geographic distance, and trade to their beta diversity before and after human-mediated spread.

Results: The spread of naturalized tree species has reduced their beta diversity of the 50 subcontinental TDWG-2 regions globally, i.e., causing substantial biotic homogenization in naturalized tree floras. Notably, we found that distant regions have become more similar in species composition than regions that are adjacent to or share a boundary with each other. Although a positive relationship between taxonomic and phylogenetic similarities was observed, taxonomic similarity showed a tendency for stronger changes. Geographic distance was the most influential factor in shaping both taxonomic similarity before naturalization, while temperature became dominant after naturalization. Contrary to expectations, trade intensity had only a marginal effect on both taxonomic and phylogenetic similarity after naturalization.

Main conclusions: Our study highlights the widespread expansion of naturalized tree species and their contribution to global biotic homogenization in naturalized tree floras. The results emphasize the diminished role of geographic distance and the growing influence of temperature in shaping species similarities after naturalization. Projections of intensifying human activities and ongoing climate change suggest that the composition of naturalized tree species is likely to undergo further reshuffling in the future, potentially reshaping the fundamental spatial structure of the biosphere.
DOI: 10.25582/data.2024-04.3090690/2557298
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3090691/2557299
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3090692/2557300
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3090695/2557301
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3090696/2557302
title: Data for EMSL Project 51287 from April 2024
DOI: 10.15468/dl.96hn88
title: Occurrence Download

description: A dataset containing 941 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia caven (Molina) Molina"
 ]
}

 The dataset includes 941 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003968-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.31362.30404
title: Household Waste
DOI: 10.3535/sz3-ax8-6k8
title: Pedicularis compacta Stephan ex Willd.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/vgw-kck-bke
title: Plantago lanceolata subsp. sphaerostachya Mert. & W. D. J. Koch

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/7k7-8mm-67p
title: Lychnis flos-cuculi L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/qk3-78l-wj5
title: Machaerium hirtum (Vell.) Stellfeld

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/y71-h0v-qw0
title: Alyssum diffusum Ten.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/by8-6ke-bnq
title: Croton macrobothrys Baill.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rf8-d2q-maz
title: Aegilops biuncialis Vis.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.