cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.29avvj
title: Occurrence Download

description: A dataset containing 127113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-73.7876411863387 3.23930625799224,-72.2797561690444 3.23930625799224,-72.2797561690444 3.81132212072394,-73.7876411863387 3.81132212072394,-73.7876411863387 3.23930625799224))"
 ]
}

 The dataset includes 127113 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003863-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t59qz6
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lychnophora damazioi Beauverd"
 ]
}

 The dataset includes 42 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003865-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7hmj4
title: Occurrence Download

description: A dataset containing 4356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus caballus Linnaeus, 1758",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 4356 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003866-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010754.0
title: Available datapackage for study 'Field Studies on the Feasibility of Interrupting the Transmission of Soil-transmitted Helminths (STH) DeWorm3 Project'

description: Over 1.5 billion people are infected with soil-transmitted helminths (STH). Global STH guidelines recommend MDA (mass drug administration) of albendazole or mebendazole to targeted populations, including pre-school age children and school-age children. However mathematical models suggests that current MDA strategies are not sufficient for interrupting disease transmission in most areas. Meanwhile many lymphatic filariasis (LF) programs have successfully treated entire populations with albendazole (in combination with ivermectin or diethylcarbamazine) and are transitioning to a state of post-MDA surveillance. This project will conduct a series of community-based cluster randomized trials in India, Malawi, and Benin to determine if maintaining three years of MDA with albendazole to entire communities following the cessation of LF programs can interrupt STH transmission in focal geographic areas. Additionally, this study aims to compare the efficacy of community-wide MDA versus targeted MDA of children in interrupting the transmission of STH. Nested implementation science research will be used to optimize the intervention, identify contextual factors influencing trial efficacy, and evaluate the feasibility of sustaining and scaling community-wide MDA for STH. These data will provide evidence necessary to inform future guidelines, policies, and operational plans as country partners engage in intensified approaches to eliminate these disabling diseases.
DOI: 10.6084/m9.figshare.27640737
title: Supplementary material

description: Supplementary material for the article "<b>Evaluation of a forest trail simulator board game by environmental educators: A didactic tool for understanding the biome, indigenous culture and mining in the Amazon rainforest</b>"
DOI: 10.6084/m9.figshare.27640737.v1
title: Supplemental material

description: Supplemental material for the article "<b>Evaluation of a forest trail simulator board game by environmental educators: A didactic tool for understanding the biome, indigenous culture and mining in the Amazon rainforest</b>"
DOI: 10.5281/zenodo.14014719
title: Human Retina Cell Atlas reference model

description: This dataset hosts files needed to reproduce the Human Retina Cell Atlas (HRCA) reference model using scArches. The HRCA data can be accessed through several interactive browsers, including HCA Data Portal, CELLxGENE, UCSC Cell Browser, and the Broad Single Cell Portal. Please use these browsers for atlas exploration and visualization. For more information on HRCA, please refer to the HRCA paper (Li et al., bioRxiv 2023) and the Github repository at https://github.com/RCHENLAB/HRCA_reproducibility. This dataset has been used in the tutorial for the HRCA reference model at https://github.com/RCHENLAB/HRCA_reproducibility/tree/main/scArches.

Data description:

1. HRCA_snRNA_allcells_rawcounts.h5ad

This file contains the cell-by-gene count matrix for over 3.1 million single nuclei and more than 36,000 gene features of the HRCA. Gene features are represented by gene symbols. Please refer to the interactive browsers for atlas exploration, where gene features are mapped to Ensembl IDs. In the cell metadata, "sampleid" indicates sample batches of cells, and "celltype" specifies 123 retina cell types.

2. model.pt

This file is the trained reference model using scArches, incorporating 10,000 highly variable features from the full count matrix. It can be directly used for cell type annotation of new retina samples.

3. HRCA_snRNA_allcells_rawcounts_latent.h5ad

This file contains the embeddings of all 3.1 million reference single nuclei generated by the trained reference model using scArches. These embeddings can be used to compare with the embeddings of query data for exploration.

4. HRCA_reference_model_gene_id_and_symbol.csv

This file contains the mapping of Ensembl IDs to gene symbols for the 10,000 features used in the reference model. This mapping can be used to convert the gene features in a query .h5ad file from gene IDs to gene symbols, allowing cell type labels to be predicted using the trained reference model, which uses gene symbols as gene features.

5. query.h5ad

This file contains a cell-by-gene count matrix for a query dataset, designed to support reproducibility in the HRCA reference model tutorial. The "majorclass" column includes pre-annotated major cell classes. Additional details on the tutorial are available at https://github.com/RCHENLAB/HRCA_reproducibility/tree/main/scArches.

6. query_latent.h5ad

This file contains the embeddings of the query data against the trained reference model. These embeddings can be compared with the reference data embeddings for exploration and visualization.
DOI: 10.5281/zenodo.14014720
title: Human Retina Cell Atlas reference model

description: This dataset hosts files needed to reproduce the Human Retina Cell Atlas (HRCA) reference model using scArches. The HRCA data can be accessed through several interactive browsers, including HCA Data Portal, CELLxGENE, UCSC Cell Browser, and the Broad Single Cell Portal. Please use these browsers for atlas exploration and visualization. For more information on HRCA, please refer to the HRCA paper (Li et al., bioRxiv 2023) and the Github repository at https://github.com/RCHENLAB/HRCA_reproducibility. This dataset has been used in the tutorial for the HRCA reference model at https://github.com/RCHENLAB/HRCA_reproducibility/tree/main/scArches.

Data description:

1. HRCA_snRNA_allcells_rawcounts.h5ad

This file contains the cell-by-gene count matrix for over 3.1 million single nuclei and more than 36,000 gene features of the HRCA. Gene features are represented by gene symbols. Please refer to the interactive browsers for atlas exploration, where gene features are mapped to Ensembl IDs. In the cell metadata, "sampleid" indicates sample batches of cells, and "celltype" specifies 123 retina cell types.

2. model.pt

This file is the trained reference model using scArches, incorporating 10,000 highly variable features from the full count matrix. It can be directly used for cell type annotation of new retina samples.

3. HRCA_snRNA_allcells_rawcounts_latent.h5ad

This file contains the embeddings of all 3.1 million reference single nuclei generated by the trained reference model using scArches. These embeddings can be used to compare with the embeddings of query data for exploration.

4. HRCA_reference_model_gene_id_and_symbol.csv

This file contains the mapping of Ensembl IDs to gene symbols for the 10,000 features used in the reference model. This mapping can be used to convert the gene features in a query .h5ad file from gene IDs to gene symbols, allowing cell type labels to be predicted using the trained reference model, which uses gene symbols as gene features.

5. query.h5ad

This file contains a cell-by-gene count matrix for a query dataset, designed to support reproducibility in the HRCA reference model tutorial. The "majorclass" column includes pre-annotated major cell classes. Additional details on the tutorial are available at https://github.com/RCHENLAB/HRCA_reproducibility/tree/main/scArches.

6. query_latent.h5ad

This file contains the embeddings of the query data against the trained reference model. These embeddings can be compared with the reference data embeddings for exploration and visualization.
DOI: 10.5281/zenodo.14058392
title: Vertical Microstructure Profiler (VMP-2000) data from Investigator cruise IN2018 V05

description: VMP-2000 CTD and microstructure data from IN2018_v05

measured temperature [C]

salinity [PSU]

pressure [Dbars]

rate of dissipation of kinetic energy [W/kg]

rate of dissipation of thermal variance [C^2/s]
DOI: 10.15468/dl.db3kw3
title: Occurrence Download

description: A dataset containing 8534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus caballus Linnaeus, 1758",
 "Country is Australia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 8534 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003868-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykp9cy
title: Occurrence Download

description: A dataset containing 30184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyciodes cocyta Cramer, 1779"
 ]
}

 The dataset includes 30184 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003867-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qqy97
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is Herbarium Berolinense, Berlin (B)",
 "TaxonKey is Gynoxys Cass."
 ]
}

 The dataset includes 96 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003870-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fuds3r
title: Occurrence Download

description: A dataset containing 1711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erinaceus europaeus Linnaeus, 1758",
 "Country is New Zealand",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1711 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003871-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xmrhm
title: Occurrence Download

description: A dataset containing 76796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-75.9284476093806 5.44809534812006,-75.7960506868384 5.44809534812006,-75.7960506868384 5.54199411213347,-75.9284476093806 5.54199411213347,-75.9284476093806 5.44809534812006))"
 ]
}

 The dataset includes 76796 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003869-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.va3fxb
title: Occurrence Download

description: A dataset containing 387748 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Otomops papuensis Lawrence, 1948, Chaerephon jobensis (Miller, 1902), Pipistrellus papuanus (Peters & Doria, 1881), Pipistrellus angulatus (Peters, 1880), Nyctophilus microtis Thomas, 1888, Myotis moluccarum (Thomas, 1915), Murina florium Thomas, 1908, Kerivoula muscina Tate, 1941, Miniopterus australis Tomes, 1858, Miniopterus medius Thomas & Wroughton, 1909, Miniopterus tristis (Waterhouse, 1845), Rhinolophus Lacépède, 1799, Rhinolophus euryotis Temminck, 1835, Hipposideros semoni Matschie, 1903, Hipposideros wollastoni Thomas, 1913, Hipposideros maggietaylorae Smith & Hill, 1981, Hipposideros diadema (É.Geoffroy Saint-Hilaire, 1813), Hipposideros cervinus (Gould, 1854), Hipposideros calcaratus (Dobson, 1877), Hipposideros ater Templeton, 1848, Aselliscus tricuspidatus (Temminck, 1835), Saccolaimus mixtus Troughton, 1925, Mosia nigrescens Gray, 1843, Emballonura raffrayana Dobson, 1879, Emballonura furax Thomas, 1911, Emballonura dianae Hill, 1956, Syconycteris australis (Peters, 1867), Rousettus amplexicaudatus (E.Geoffroy, 1810), Pteropus neohibernicus Peters, 1876, Pteropus macrotis Peters, 1867, Paranyctimene raptor Tate, 1942, Nyctimene albiventer (Gray, 1863), Nyctimene aello (Thomas, 1900), Macroglossus minimus (E.Geoffroy, 1810), Dobsonia moluccensis (Quoy & Gaimard, 1830), Dobsonia minor (Dobson, 1879), Aproteles bulmerae Menzies, 1977)"
 ]
}

 The dataset includes 387748 records from 2267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003856-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7492mr
title: Occurrence Download

description: A dataset containing 59917 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Ginkgo L."
 ]
}

 The dataset includes 59917 records from 665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026497-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4grs4z
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alexandrium affine (H.Inoue & Y.Fukuyo) Balech, 1995"
 ]
}

 The dataset includes 408 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026508-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kedznd
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vipera ursinii (Bonaparte, 1835)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026509-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3wjgn
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wolffiella oblonga (Phil.) Hegelm."
 ]
}

 The dataset includes 375 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026510-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wremsy
title: Occurrence Download

description: A dataset containing 492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elodea bifoliata H.St.John"
 ]
}

 The dataset includes 492 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026512-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cez443
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cervus elaphus corsicanus Erxleben, 1777",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026511-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25903/hfcp-t823
title: 1771 Marion Dufresne expedition

description: This dataset describes the 1771-1773 voyages of the Mascarin under Captain Marion Dufresne, then Captain Crozet, and the Marquis de Castries under Captain Duclesmeur

Software/equipment used to create/collect the data: excel, JCU Libraries 

Software/equipment used to manipulate/analyse the data: TLCMap
DOI: 10.15468/dl.cgsbdh
title: Occurrence Download

description: A dataset containing 3352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-140.57788 27.61846,-112.29361 27.61846,-118.11565 38.75289,-140.57788 38.93217,-140.57788 27.61846))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Augochlorella pomoniella (Cockerell, 1915)"
 ]
}

 The dataset includes 3352 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026513-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykctby
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "TaxonKey is Cyperus tuberosus Rottb."
 ]
}

 The dataset includes 73 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026515-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xgc7g
title: Occurrence Download

description: A dataset containing 573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Richea dracophylla R.Br."
 ]
}

 The dataset includes 573 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026514-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14043822
title: FIZIKA О'QITISHDA LABORATORIYA VA AMALIY MASHG'ULOTLARNI BAHOLASH ORQALI TALABALARNING BILIMLARINI OSHIRISH
DOI: 10.5281/zenodo.14043823
title: FIZIKA О'QITISHDA LABORATORIYA VA AMALIY MASHG'ULOTLARNI BAHOLASH ORQALI TALABALARNING BILIMLARINI OSHIRISH
DOI: 10.15468/dl.mruzng
title: Occurrence Download

description: A dataset containing 1439 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnobium laevigatum (Humb. & Bonpl. ex Willd.) Heine"
 ]
}

 The dataset includes 1439 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026517-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9sr74
title: Occurrence Download

description: A dataset containing 13465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 13465 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026516-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phj7u5
title: Occurrence Download

description: A dataset containing 1122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-91.47232 18.15695,-86.63159 18.15695,-86.63159 21.70584,-91.47232 21.70584,-91.47232 18.15695))",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhizophora mangle L."
 ]
}

 The dataset includes 1122 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026519-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqhj3q
title: Occurrence Download

description: A dataset containing 2760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-131.50480 31.46202,-114.26907 31.46202,-114.26907 38.35631,-131.50480 38.35631,-131.50480 31.46202))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Halictus farinosus Smith, 1853"
 ]
}

 The dataset includes 2760 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026520-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nff3a
title: Occurrence Download

description: A dataset containing 1631 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limnobium spongia (Bosc) Steud."
 ]
}

 The dataset includes 1631 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026521-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrjmdp
title: Occurrence Download

description: A dataset containing 6893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra ibex Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 6893 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026522-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.