cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1386868.v4
title: A VAMP-associated protein, PVA31 is involved in leaf senescence in <i>Arabidopsis</i>

description: VAMP-associated proteins (VAPs) are highly conserved among eukaryotes. Here, we report a functional analysis of one of the VAPs, PVA31, and demonstrate its novel function on leaf senescence in <i>Arabidopsis</i>. The expression of <i>PVA31</i> is highly induced in senescence leaves, and localizes to the plasma membrane as well as the ARA7-positive endosomes. Yeast two-hybrid analysis demonstrates that PVA31 is interacted with the plasma membrane localized-VAMP proteins, VAMP721/722/724 but not with the endosome-localized VAMPs, VAMP711 and VAMP727, indicating that PVA31 is associated with VAMP721/722/724 on the plasma membrane. Strong constitutive expression of <i>PVA31</i> under the control of the Cauliflower mosaic virus 35S promoter induces the typical symptom of leaf senescence earlier than WT in normal growth and an artificially induced senescence conditions. In addition, the marker genes for the SA-mediated signaling pathways, <i>PR-1</i>, is promptly expressed with elicitor application. These data indicate that <i>PVA31</i>-overexpressing plants exhibit the early senescence phenotype in their leaves, and suggest that PVA31 is involved in the SA-mediated programmed cell death process during leaf senescence and PR-protein secretion during pathogen infection in <i>Arabidopsis</i>.
DOI: 10.6084/m9.figshare.3317071.v1
title: New insights on different response of MDMA-elicited serotonin syndrome and toxicity to systemic and intracranial administrations in the rat brain

description: the data include excel format and images
DOI: 10.6084/m9.figshare.24154785.v1
title: Sample plot data of Yipinglang Forest Farm.xlsx

description: The study area is the Yipinglang Forest Area, Lufeng County, Yunnan Province. The area is located on the Central Yunnan Plateau (Figure 1), and the forest area ranges from 24°59′ to 25°13′N and from 101°40′ to 102°05′ E, with elevations from 1495 to 2594 m. The region has a subtropical plateau monsoon climate with distinct wet and dry seasons. The annual temperature is 15.6 ℃ to 16.2 ℃, the annual precipitation is 930.5 mm, and the annual cumulative temperature (over 10 ℃) is 4900 to 5913 ℃. Subtropical evergreen broad-leaved forests dominate this region. Major tree species include Yunnan Pine (<i>Pinus yunnanensis</i> Franch.), Huashan Pine (<i>Pinus armandi</i> Franch.), Yunjiang Castanopsis (<i>Castanopsis orthacantha</i> Franch.), Yunnan Ketelleria (<i>Keteleeria evelyniana</i> Mast.), Mountain Castanopsis (<i>Castanopsis delavayi</i> Franch.) and Yunnan Oriental White Oak (<i>Cyclobalanopsis glaucoides</i> Schottky.).
DOI: 10.6084/m9.figshare.28543370.v1
title: <b>Revistas Académicas de América Latina, Caribe y España de Artes y Humanidades</b>

description: El presente listado reúne información relevante sobre revistas académicas especializadas en Artes y Humanidades de América Latina, el Caribe y España. Esta compilación surge como un recurso de consulta para investigadoras, creadoras, docentes y editoras interesadas en conocer y ampliar sus redes de colaboración, así como en identificar espacios de divulgación para sus producciones académicas y artísticas.La selección de revistas incluye datos clave como el nombre, país de origen, institución editora, áreas temáticas, periodicidad y criterios de acceso, entre otros aspectos fundamentales que permiten visibilizar la diversidad de enfoques editoriales, metodologías y formatos de publicación que configuran el campo de las revistas académicas en estas disciplinas.Esperamos que esta herramienta contribuya al fortalecimiento de la producción de conocimiento y a la construcción de vínculos entre comunidades académicas y culturales, favoreciendo el acceso abierto, el intercambio crítico y el desarrollo de proyectos colaborativos.
DOI: 10.6084/m9.figshare.28694384.v6
title: Raw Data and processed data

description: Genome, F1 mouse
DOI: 10.6084/m9.figshare.25139510.v2
title: <b>Paleocene</b><b> opening of </b><b>Drake </b><b>Passage</b>

description: <b>The South Shetland Islands paleomagnetic data used in the paper "</b><b>Paleocene</b><b> opening of </b><b>Drake </b><b>Passage</b><b>"</b>
DOI: 10.6084/m9.figshare.8084960.v2
title: Installer of Physicochemical n-Grams Tool & Benchmark dataset used for the development CDKI Prediction Models

description: Zip file of PnGT Installer.Positive & negative dataset for cyclin-dependent kinase inhibitor prediction (Machine Leaning Model): CDKI & Non-CDKI Protein Sequence in FASTA file format with &lt;90% sequence similarity.
DOI: 10.6084/m9.figshare.14846865.v1
title: Dataset of Gratitude Messages in Online Discussion of International Education Course

description: Students’ posted messages on the message board of Moodle were monitored, and the following data of individual students were collected. Evaluation scores (0-10) of the messages by a teacher, the number of letters involved in messages, the number of accesses to the message board, the number of messages with gratitude, the number of links or references shown in messages, the number of figures in messages, sex (man or female), the target country name of an assignment answer, the target item number (1-4) of an assignment answer, and the post number of messages. After their communication in the discussion board, the teacher gave a reflection lecture to provide a deeper understanding of the topic, and a questionnaire of the Expression of Gratitude in Relationships Measure was executed. Collected data were introduced into analyses. NodeXL Pro, a toolkit for social network analysis, was used to arrange the data, calculate metrics, and generate social graphs. The analysis was processed by the exponential random graph models in which the ‘statnet’ and the ‘stargazer’ packages for R were used.
DOI: 10.6084/m9.figshare.10282718.v1
title: curated_adipo_descriptor

description: Processed data used to generate figures and tables in the manuscript "Modeling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes." <br>
DOI: 10.6084/m9.figshare.22183885.v1
title: Cholec80-CVS: An open dataset with an evaluation of Strasberg's critical view of safety for Artificial Intelligence

description: Strasberg's criteria to detect a critical view of safety is a widely known strategy to reduce bile duct injuries during laparoscopic cholecystectomy. In spite of its popularity and efficiency, recent studies have shown that human miss-identification errors have led to important bile duct injuries occurrence rates. Developing tools based on artificial intelligence that facilitate the identification of a critical view of safety in cholecystectomy surgeries can potentially minimize the risk of such injuries. With this goal in mind, we present Cholec80-CVS, the first open dataset with video annotations of Strasberg's Critical View of Safety (CVS) criteria. Our dataset contains CVS criteria annotations provided by skilled surgeons for all videos in the well-known Cholec80 open video dataset. We consider that Cholec80-CVS is the first step towards the creation of intelligent systems that can assist humans during laparoscopic cholecystectomy.
DOI: 10.4121/uuid:e939aec0-bdd1-440f-bd1e-c49ff10d0a07
title: CHASE-PL Forcing Data: Gridded Daily Precipitation & Temperature Dataset 5 km (CPLFD-GDPT5)

description: Gridded Daily Precipitation & Temperature Dataset at 5 km resolution for the area of Poland enlarged by the Vistula and Odra basins, for the time period 1951-2013, developed within the CHASE-PL project This high-resolution (5 km) precipitation and temperature dataset CPLFD-GDPT5 was constructed with the purpose of using it for regional- to local-scale earth system modelling, in particular for hydrological modelling and as a reference dataset for climate change impact assessments. A number of geostatistical techniques (kriging with elevation as external drift for temperature; combination of universal and indicator kriging for precipitation) were applied to construct it. Raw input data (daily station-based time series) were acquired from various providers: IMGW-PIB, DWD, ECAD, NOAA-NCDC. Three variables (precipitation, minimum and maximum temperature) are available at three temporal aggregations (daily, monthly and annual). Nine NetCDF files, each for the period 1951-2013, are made available.
DOI: 10.6084/m9.figshare.26347153.v1
title: Fig 3F 3G 3H.pzfx

description: <b>Evaluation of the Role of HSD17B6 in Fatty Liver Disease</b>
DOI: 10.6084/m9.figshare.1298991.v4
title: Genes related to fruiting body initiation of the mushroom, Coprinopsis cinerea.

description: This file describes the expression and function profiles of genes related to fruiting body initiation of the mushroom, <em>Coprinopsis cinerea</em>. Please cite: Cheng X, Hui JHL, Lee YY, Kwan HS. 2015. A 'developmental hourglass' in fungi. Molecular Biology and Evolution 2015; doi: 10.1093/molbev/msv047
DOI: 10.6084/m9.figshare.26934241.v6
title: Supplementary Material for: Personality Traits and Drug Use: A Longitudinal Study Using Data from the British Cohort Study

description: Introduction: Drug use is a significant health, economic and social concern globally. Research indicates that personality traits are crucial in explaining drug use. This paper contributes to the expanding literature by exploring how personality traits at age 10 affect the likelihood of having used any drug at age 30.
Methods: Data were extracted from the British Cohort Study 1970. The Big Five dimensions were derived by aggregating items related to distinct traits. Furthermore, probit regression analysis was conducted to ascertain the relationship between personality traits at age 10 and drug use by age 30. 
Results: Children with low levels of conscientiousness, or agreeableness; or high levels of extraversion, or internal locus of control at the age of 10 are more likely to use any drug in adulthood. In addition, significant differences were observed across gender and types of drugs. 
Conclusions: These findings suggest that early personality traits play a pivotal role in predicting the likelihood of drug use in adulthood. The results interest policymakers, as they could guide the implementation of personality-targeted interventions to mitigate the adverse effects of specific personality traits. For instance, emotional regulation training could benefit children with low conscientiousness; while stimulating activities such as sports, creative arts, or music could engage children with high extraversion.
DOI: 10.6084/m9.figshare.13607306.v2
title: Significance of linkage disequilibrium and epistasis on the genetic variances and covariance between relatives in non-inbred and inbred populations

description: Dataset.<br>
DOI: 10.6084/m9.figshare.23609646.v5
title: Dataset_Details.xlsx

description: This xlsx file serves as a repository of information regarding the patients and includes birth weight, gestation age, and gender.
DOI: 10.6084/m9.figshare.25421143.v1
title: Distinguish response of low-dose radiation with different dose-rate on gene expression of human coronary artery endothelial cells: a bioinformatic study based on transcriptomic sequencing

description: People are exposed to low-dose radiation in medical diagnosis, occupational, or life circumstances, but the effect of low-dose radiation on human health is still controversial. The biological effects of radiation below 100 mGy are still unproven. In this study, we observed the effects of low-dose radiation (100 mGy) on gene expression in human coronary artery endothelial cells (HCAECs) and its effect on molecular signaling. HCAECs were exposed to 100 mGy ionizing radiation at 6 mGy/h (low-dose-rate) or 288 mGy/h (high-dose-rate). After 72 h, total RNA was extracted from sham or irradiated cells for Quant-Seq 3'mRNA-Seq, and bioinformatic analyses were performed using Metascape. Gene profiling was validated using qPCR. Compared to the non-irradiated control group, 100 mGy of ionizing radiation at 6 mGy/h altered the expression of 194 genes involved in signaling pathways related to heart contraction, blood circulation, and cardiac myofibril assembly differentially. However, 100 mGy at 288 mGy/h altered expression of 450 genes involved in cell cycle-related signaling pathways, including cell division, nuclear division, and mitosis differentially. Additionally, gene signatures responding to low-dose radiation, including radiation dose-specific gene profiles (HIST1H2AI, RAVER1, and POTEI) and dose-rate-specific gene profiles (MYL2 for the low-dose-rate and DHRS9 and CA14 for the high-dose-rate) were also identified. We demonstrated that 100 mGy low-dose radiation could alter gene expression and molecular signaling pathways at the low-dose-rate and the high-dose-rate differently. Our findings provide evidence for further research on the potential impact of low-dose radiation on cardiovascular function.
DOI: 10.6084/m9.figshare.3510442.v1
title: Appendix G. Distributions of six trait metrics for seed size produced by four community assembly simulation models.

description: Distributions of six trait metrics for seed size produced by four community assembly simulation models.
DOI: 10.6084/m9.figshare.24265561.v1
title: Iron Overload in Patients with Chronic Kidney Disease on Peritoneal Dialysis: A Dataset

description: A total of 18 papers were selected and reviewed in-depth. The key data extracted included patient demographics, diagnostic methods for iron overload, contributing factors, clinical consequences, and therapeutic interventions.
DOI: 10.6084/m9.figshare.16616107.v1
title: Supplementary Material for: Attitude Matters! How Attitude towards Bariatric Surgery Influences the Effects of Behavioural Weight Loss Treatment

description: <b><i>Introduction:</i></b> Multidisciplinary obesity services at university hospitals usually treat patients with more complex and severe obesity. In addition, patients with Class 3 obesity, in particular, have different attitudes regarding the choices of therapy. <b><i>Methods:</i></b> This explorative study investigated the effect of patient attitudes towards bariatric surgery on body weight change (primary outcome) and psychological improvement (secondary outcomes: quality of life, depression, anxiety, and eating behaviour) in a 6-month moderate behavioural weight loss (BWL) programme in a university outpatient setting. <b><i>Results:</i></b> 297 patients with mostly Class 3 obesity participated in the programme. The patients did not yet have any indications for bariatric surgery. Of the participants, 37% had a positive attitude towards bariatric surgery (POS), whereas 38% had a negative attitude (NEG). The drop-out rate was 8%. NEG participants lost significantly more body weight than the POS participants (intention-to-treat population: 4.5 [SD: 6.3] kg versus 0.4 [SD: 5.8] kg; <i>p</i> &lt; 0.001). In both subgroups, anxiety, depression, the mental score for quality of life, and eating behaviour improved. <b><i>Conclusion:</i></b> A BWL treatment in a clinical setting identified 2 distinct groups with different attitudes towards bariatric surgery that were associated with different body weight change outcomes. These groups may require differently targeted programmes to achieve the best body weight loss results.
DOI: 10.6084/m9.figshare.6652370.v1
title: Supplementary Material for: Pityriasis Rosea during Pregnancy: Major and Minor Alarming Signs

description: <b><i>Background:</i></b> Pityriasis rosea (PR) is a self-limiting exanthematous disease associated with human herpesvirus (HHV)-6 and/or HHV-7 reactivation. In pregnant women, PR may be associated with pregnancy complications. <b><i>Objective:</i></b> To determine relevant risk factors in the development of negative pregnancy outcome in PR. <b><i>Methods:</i></b> Between 2005 and 2017 at the Department of Dermatology, University of Genoa, we recruited 76 women who developed PR during pregnancy. In 60 patients without known risk factors for intrauterine fetal death (30 with pregnancy complications and 30 without) we analyzed the pregnancy week of PR onset, presence of enanthem and of constitutional symptoms, PR body surface area involvement, age, and in 50 patients (20 with pregnancy complications and 30 without), the viral load of HHV-6 and HHV-7 (copies/mL). <b><i>Results:</i></b> In logistic regression analysis, early onset of PR (<i>p</i> = 0.0017) and enanthem (<i>p</i> = 0.0392) proved to be significantly associated with pregnancy complications. HHV-6 viral load (copies/mL) (<i>p</i> &lt; 0.0001), constitutional symptoms (<i>p</i> &lt; 0.001), and PR body surface area involvement (<i>p</i> &lt; 0.004) were also significantly associated with pregnancy complications. <b><i>Conclusion:</i></b> The onset of PR before week 15 and enanthem may be considered major risk factors that should alarm the dermatologist. Constitutional symptoms and involvement of &gt; 50% of the body area may be considered minor risk factors.
DOI: 10.25381/cput.17061065.v1
title: The importance of information and communication technology in women-owned businesses in Kigali, Rwanda

description: <b>Clearance Certificate No | 2018FBREC575</b><br><br>Positivism philosophy underpins the study; a quantitative survey method was used to collect cross-sectional data from 409 women-owned SMEs in the Kigali sample population selected purposively. Validity and reliability tested. The data analysis package used was the Statistical Package for the Social Sciences (SPSS) latest version (26spss) and Stata 16. Ethical consideration guidelines for researcher applied during data collection. The data was gathered from 409 women-owned SMEs in Kigali using a Personal survey; Computer-Assisted Personal Interviewing, Close-ended questionnaires. The researcher composed the questionnaire and consulted the CPUT statistician, who helped adjust the questionnaire to meet the criteria of validity and reliability to enable the analysis statistically, using SPSS and Stata. He conducted a pilot test from 15 women entrepreneurs in Kigali to ensure that the questionnaire was comprehensive, free from error, bias and easy to respond. The questionnaire contained seven sections. 1) Demographic information was gathered using dichotomous, multiple-choice, fill-in, filter and partially closed questions. 2) Dichotomous questions, multiple-choice and follow-up questions collected information investigating the knowledge/skills of women-owned SMEs in Kigali. 3) Business profile data was collected and used fill-in, multiple-choice dichotomous, and filter questions. 4) Multiple-choice questions were used to collect motivation and opinion data from women-owned businesses in Kigali. 5) The Likert scale was used to measure the constraints faced by women-owned SMEs in Kigali. 6) Used Dichotomous, multiple-choice, fill-in, filter, partially closed, and Likert scale questions to find ICT solutions to constraints faced by women-owned SMEs in Kigali. 7) Dichotomous, multiple-choice, filter, partially closed, and Likert scale questions were used to collect data from women-owned businesses in Kigali toward the government and stakeholders' efforts and policies to facilitate and promote the integration of ICT among women businesses in Kigali. The second data, including organisation reports, government publications, journal articles, and theses, were collected from the literature review. Data were collected according to CPUT ethics of conduct, and the researcher received the consent of respondents. The data analysis used SPSS and Stata software and presented in graphs, charts and tables.
DOI: 10.6084/m9.figshare.3515453.v1
title: Appendix B. Examination of the effectiveness of the experimental perturbations.

description: Examination of the effectiveness of the experimental perturbations.
DOI: 10.6084/m9.figshare.27936030.v1
title: GWR output and description of the output variables from GWR models in SEUS and PNW

description: We estimated Geographically Weighted Regression models of NEP derived from the Ecosystem Demography Model as a function of soil, topography, climate, and forest management practices for the period 2000-2015, using 383 and 407 10 x 10 km<sup>2</sup> landscapes in SEUS and PNW, respectively.
DOI: 10.6084/m9.figshare.24633738.v1
title: Supplementary Material for: Diagnostic immunocytostaining with Peroxisome Proliferator-Activated Receptor-Gamma in urine cytology samples

description: Introduction: Urine cytology is a common method for detection of urothelial carcinoma (UC), however, is not high sensitivity. Improvement of the accuracy of cytodiagnosis using immunocytostaining as an auxiliary method is needed. This study aimed to determine the cyto-diagnostic usefulness of peroxisome proliferator-activated receptor-gamma (PPAR-γ) immunocytostaining in urine cytology for the detection of urothelial carcinomas, particularly low-grade urothelial carcinomas (LGUC). Methods: PPAR-γ immunocytostaining was performed for 37 urothelial carcinoma (UC) cases and 26 benign cases. Among the UC cases, 22 cases were of the papillary proliferation type, not including the mixed type comprising both papillary and flat growth. Fifteen LGUC cases of all papillary proliferation types were included. For comparison, the same samples were also immunocytostained for p53 and Ki-67. Results: Of the UC cases, 25 of 37 were positive for PPAR-γ, while 24 of the 26 benign cases were PPAR-γ-negative. Regardless of histological grading, 13 of the 22 UC cases with papillary proliferation were PPAR-γ-positive. In particular, PPAR-γ immunocytostaining showed higher sensitivity for LGUC cases than that of the other biomarkers. Regarding LGUC specifically, 4 of 10 cases not identified by primary cytology were detected by PPAR-γ immunocytostaining. Conclusion: PPAR-γ immunocytostaining enhances the accuracy of urine cytodiagnosis. Furthermore, PPAR-γ is a more useful immunobiomarker in urine cytology than p53 and Ki-67, the commonly used immunobiomarkers for malignant cell detection.
DOI: 10.6084/m9.figshare.28656203.v1
title: Backward masking

description: This dataset contains LFP and spike recordings from 5 Utah arrays in human LOC while performing a backward masking experiment.