cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hf03h/2
title: Ruiz-Ramos_et_al_2014_DS_STRUCTURE

description: Input file for Structure v 2.3.3. First line contains locus names. One line per individual. Missing data is encoded as -9. Column1: Sample ID; Column2: Population; Column3: Population Flag; Column 4-23: allele sizes
DOI: 10.5061/dryad.k71m0/1
title: List of examined biological material (deposited in different musei)

description: List of biological material examined. This material is deposited in the crutacean collections of different musei in the world.
DOI: 10.5061/dryad.k9c31/40
title: 45_Van_Heerwaarden_&_Sgro_2011_D. simulans_thorax_length

description: This data file contains raw thorax length of female and male D. simulans from three replicate vials at three rearing temperatures and from 16 populations collected in 2008 (Fig. 2). When using this data, please cite the original publication:van Heerwaarden, B. and Sgrò, C. M. (2011). The effect of developmental temperature on the genetic architecture underlying size and thermal clines in Drosophila melanogaster and D. simulans from the east coast of Australia. Evolution 65: 1048-1067
DOI: 10.5061/dryad.k9c31/41
title: 46 Van Heerwaarden & Sgrò 2011, D. simulans wing centroid size

description: This data file contains raw wing centroid size of female and male D. simulans from three replicate vials at three rearing temperatures and from 16 populations collected in 2008 (Fig. 2). When using this data, please cite the original publication:van Heerwaarden, B. and Sgrò, C. M. (2011). The effect of developmental temperature on the genetic architecture underlying size and thermal clines in Drosophila melanogaster and D. simulans from the east coast of Australia. Evolution 65: 1048-1067
DOI: 10.5061/dryad.k9c31/42
title: 47_Van_Heerwaarden_&_Sgro_2011_D. simulans_wing_thorax_ratio

description: This data file contains wing-to-thorax ratio of female and male D. simulans from three replicate vials at three rearing temperatures and from 16 populations collected in 2008 (Fig. 2). When using this data, please cite the original publication:van Heerwaarden, B. and Sgrò, C. M. (2011). The effect of developmental temperature on the genetic architecture underlying size and thermal clines in Drosophila melanogaster and D. simulans from the east coast of Australia. Evolution 65: 1048-1067
DOI: 10.5061/dryad.k9c31/43
title: 48_Weeks_et_al_2005_Clock_locus

description: This data set contains frequencies of the two most common alleles (repeats 31 and 29) of the Gln clock gene for 18 Drosophila melanogaster populations collected in 2004 (Fig. 4). Note longitudes in data are approximate. When using this data, please cite the original publication:Weeks, A. R., McKechnie, S. W. and Hoffmann, A. A. (2005). In search of clinal variation in the period and clock timing genes in Australian Drosophila melanogaster populations. Journal of Evolutionary Biology 19: 309-656
DOI: 10.5061/dryad.k9c31/44
title: 49_Weeks_et_al_2005_Period_locus

description: This data set contains frequencies of the (Thr-Gly)17 and (Thr.Gly)20 period allele (Frequency17 and Frequency20) for 18 Drosophila melanogaster populations collected in 2004 and for 16 populations collected 2002 (Fig. 1). When using this data, please cite the original publication:Weeks, A. R., McKechnie, S. W. and Hoffmann, A. A. (2005). In search of clinal variation in the period and clock timing genes in Australian Drosophila melanogaster populations. Journal of Evolutionary Biology 19: 309-656
DOI: 10.5061/dryad.k9c31/45
title: 50_Weeks_et_al_2005_ThrGly_locus

description: This data set contains mean Thr-Gly repeat length for 18 Drosophila melanogaster populations collected in 2004 and for 20 populations collected 2002 (Fig. 2). Note longitudes in data are approximate. When using this data, please cite the original publication:Weeks, A. R., McKechnie, S. W. and Hoffmann, A. A. (2005). In search of clinal variation in the period and clock timing genes in Australian Drosophila melanogaster populations. Journal of Evolutionary Biology 19: 309-656
DOI: 10.5061/dryad.k9c31/48
title: 53_Collinge_et_al_2006_Ovariole_number

description: This data file contains ovariole numbers of both ovaries of four mated and four non-mated D. melanogaster females originating from a high and low altitude population at five latitudes (ten populations) collected in 2002 (Fig. 3). When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/49
title: 54_Collinge_et_al_2006_Development_time

description: This data file contains egg to adult development times (days) for female and male D. melanogaster originating from a high and low altitude population at five latitudes collected in 2002. Development times were scored for groups of 10 eggs and emerging flies were collected, counted and sexed every 24h (ten populations) (Fig. 3). When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/50
title: 55_Collinge_et_al_2006_Wing_area

description: This data file contains wing are (mm2) for female and male D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002 (Fig. 3). When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.m34dv/1
title: Data-set: experiment 1 of EVOB-D-15-00458

description: Data-set with all relevant variables: experiment 1, EVOB-D-15-00458
DOI: 10.5061/dryad.m34dv/2
title: Data-set: experiment 2, EVOB-D-15-00458

description: Data-set with all relevant variables: experiment 2, EVOB-D-15-00458
DOI: 10.5061/dryad.s1989/1
title: Mortality data from Burial Experiments
DOI: 10.5061/dryad.t3r02/8
title: Ray_BEAST

description: BEAST input file for generating ray region dated tree
DOI: 10.5061/dryad.v6581/1
title: Schuette_kenyan_ungulate_distance_data

description: All data were collected in Olkiramatian and Shompole Maasai Group Ranches in the southern Rift Valley of Kenya from 2008 - 2010. All column headings in the data file are defined in the 'Notes' field in this Excel workbook. Details on survey methods are included in the manuscript. Additional details are available upon request.
DOI: 10.5061/dryad.1hr49/1
title: AppendixS1

description: Pairwise Euclidean distances and Principal Coordinates scores derived from entire appendicular data and from anterior and posterior data partitions
DOI: 10.5061/dryad.2c47d/1
title: Ex2controls

description: gpx and csv files of all control flights in experiment.  B number is subject identifier, number following indicates flight. L and R indicate open eye in flight.  B indicates flight is binocular
DOI: 10.5061/dryad.2c47d/2
title: Ex2exp

description: gpx and csv files of all experimental flights in experiment.  B number is subject identifier, number following indicates flight. L and R indicate open eye in flight.  B indicates flight is binocular
DOI: 10.5061/dryad.3rq87/1
title: 2015_Pamminger_ProcB_data
DOI: 10.5061/dryad.43pv1/1
title: Raw Data for Prounis Foley Rehman and Ophir

description: This is the entire data raw data set for all comparisons reported in the manuscript. Data were analyzed using GraphPad Prism 5.0.
DOI: 10.5061/dryad.4t420/1
title: Caching and operant choice data and R script

description: These data were collected in two experiments in Lincoln, Nebraska, in which 12 pinyon jays (Gymnorhinus cyanocephalus) experienced two tasks: caching food items and selecting between smaller, sooner and larger, later food rewards.
DOI: 10.5061/dryad.55044/33
title: sp911.tar
DOI: 10.5061/dryad.55044/34
title: sp912.tar
DOI: 10.5061/dryad.55044/35
title: sp913.tar
DOI: 10.5061/dryad.55044/36
title: sp921.tar
DOI: 10.5061/dryad.55044/37
title: sp922.tar
DOI: 10.5061/dryad.55044/38
title: sp923.tar
DOI: 10.5061/dryad.55044/40
title: sp1013.tar
DOI: 10.5061/dryad.55044/41
title: sp1012.tar
DOI: 10.5061/dryad.55044/42
title: sp1021.tar
DOI: 10.5061/dryad.5h59j/1
title: Coyle&Hurlbert_GEB

description: Data files and code for conducting analyses described in the associated publication. Includes a README file.
DOI: 10.5061/dryad.61m60/1
title: Drosophila mettleri transcriptome assembly

description: Transcriptome assembled de novo using Trinity.  Paired end Illumina sequencing reads were from third instar larvae from two populations reared on three food types.
DOI: 10.5061/dryad.61m60/2
title: Read count matrix file used for DE analysis

description: Read counts produced by RSEM, rounded to integer values.
DOI: 10.5061/dryad.6s6rb/1
title: Onshore Industrial Wind Turbine Locations for the United States

description: This data set provides industrial-scale onshore wind turbine locations in the United States up to March 2014, corresponding facility information, and turbine technical specifications
DOI: 10.5061/dryad.88mv3.1
title: Data from: Species selection favors dispersive life histories in sea slugs, but higher per-offspring investment drives shifts to short-lived larvae
DOI: 10.5061/dryad.88mv3.2/10.2
title: Table S4, BiSSE model fit using a pruned input tree and global estimate of unsampled taxa

description: Comparison of BiSSE models correcting for missing data with a pruned input tree and one overall estimate of the percentage of unsampled taxa (69%), with either (a) one rate of character change, or (b) rates of reversal (q10) constrained to be rare (&lt;1%) relative to gains of lecithotrophy (q01).
DOI: 10.5061/dryad.88mv3.2/11.2
title: Table S5, BiSSE parameter estimates using a percentage of unsampled taxa to correct for missing data

description: Maximum-likelihood parameter estimates for BiSSE models, correcting for missing data using an overall percentage of unsampled taxa (69%).  The ML tree (Fig. 3) was pruned of terminals missing character data, and used as the input tree for BiSSE analyses with three phylogenetic partitions across Sacoglossa, and either (A) one rate of character change, or (B) rates of reversal to planktotrophy (q10) constrained to be rare (&lt;1%) relative to forward rates (q01).  Estimates from the preferred model are bolded, with alternatives shown in descending order of AIC scores.
DOI: 10.5061/dryad.88mv3.2/12.2
title: Table S6, References cited in Table 4

description: References cited in Table 4, from which data on development modes were taken for select clades in Heterobranchia and Caenogastropoda.
DOI: 10.5061/dryad.88mv3.2/6.2
title: Figure S6, Posterior distributions of rate parameters from dependent models of correlated trait evolution

description: Posterior distributions of parameters from dependent models of trait evolution, allowing ECY and development mode to evolve in a correlated manner.  Transition rates are labeled as in Fig. 2.  Z = percentage of time a rate was in the zero bin.
DOI: 10.5061/dryad.88mv3.2/7.2
title: Table S1, Sampled taxa and collection details

description: Species names, sample codes and collection details for sequenced taxa used in phylogenetic analyses.  Blank cells reflect missing information for sequence data obtained from a public database.
DOI: 10.5061/dryad.88mv3.2/8.2
title: Table S2, Developmental character data for Sacoglossa

description: Developmental character data for Sacoglossa including larval development mode, presence/absence and pattern of extra-capsular yolk (ECY), mean egg diameter (± SD), and mean larval shell width (± SD) at hatching.  Taxa are listed alphabetically by traditional family within higher clades, and then by binomial name within family.  Generic names in quotation marks denote taxa that do not group with most other members of the genus to which they are traditionally assigned.
DOI: 10.5061/dryad.88mv3.2/9.2
title: Table S3, NCBI accession numbers

description: Accession numbers from the National Center for Bioinformatics database for sequences generated and/or analyzed in this study.
DOI: 10.5061/dryad.d37n0/1
title: Nectar accessibility and flower-specific hoverfly longevity, choice, visitation and abundance

description: The Excel file contains 5 data sets, one for each test described in the related paper: 1. Flower size of selected plants species. 2. Hoverfly survival: survival time of male and female Episyrphus balteatus in relation to the flower species present in cage. 3. Flower choice: time allocation of male and female Episyrphus balteatus to one of four flower species present in cage, translated into selection events. 4. Flower visitation: composition of flower visiting insects per plant species in field margin strips. 5. Hoverfly abundance: number of zoophagous hoverflies (and other flower-visiting insects) in relation to flower abundance and composition of field margin strips. The first sheet provides a more detailed description of the 5 data sets.
DOI: 10.5061/dryad.fs4cp/20
title: RUN1_S7_R1.fastq

description: Raw fastq file containing data for sample id RUN1_S7 R1
DOI: 10.5061/dryad.fs4cp/22
title: RUN1_S8_R1.fastq

description: Raw fastq file containing data for sample id RUN1_S8 R1
DOI: 10.5061/dryad.fs4cp/23
title: RUN1_S8_R2.fastq

description: Raw fastq file containing data for sample id RUN1_S8 R2
DOI: 10.5061/dryad.fs4cp/24
title: RUN2_S1_R1.fastq

description: Raw fastq file containing data for sample id RUN2_S1 R1
DOI: 10.5061/dryad.fs4cp/25
title: RUN2_S1_R2.fastq

description: Raw fastq file containing data for sample id RUN2_S1 R2
DOI: 10.5061/dryad.fs4cp/26
title: RUN2_S2_R1.fastq

description: Raw fastq file containing data for sample id RUN2_S2 R1
DOI: 10.5061/dryad.fs4cp/27
title: RUN2_S2_R2.fastq

description: Raw fastq file containing data for sample id RUN2_S2 R2
DOI: 10.5061/dryad.fs4cp/28
title: RUN2_S3_R1.fastq

description: Raw fastq file containing data for sample id RUN2_S3 R1
DOI: 10.5061/dryad.fs4cp/29
title: RUN2_S3_R2.fastq

description: Raw fastq file containing data for sample id RUN2_S3 R2
DOI: 10.5061/dryad.hf03h/3
title: Ruiz-Ramos_et_al_2014_Structure_Parameters

description: Parameters for Structure v 2.3.3.
DOI: 10.5061/dryad.hf03h/4
title: VK906_MaxEnt_dryad

description: Environmental data is in ASCII grid file format for VK906.  This is a non-proprietary text file format for gridded data.  This file format describes the number of columns and the number of rows, the origin in the lower left corner, the cell-size, and a value or no-data value for each cell starting in the upper-left corner.ASC grids were used for Bathymetry, Slope, and Aspect.  Bathymetry is the depth below sea-level.  Slope is the value in degree or slope percentage between adjacent cells.  Aspect is the direction of slope between adjacent cells.  Slope and Aspect were derived from Bathymetry collected with a multibeam echo-sounder.  CSV files contain the UTM location for each coral collected and an attribute that was analyzed in MaxEnt. (Clone ID, Color, and MSAT Lineage)
DOI: 10.5061/dryad.hf03h/5
title: VK826_MaxEnt_dryad

description: Environmental data is in ASCII grid file format for VK826.  This is a non-proprietary text file format for gridded data.  This file format describes the number of columns and the number of rows, the origin in the lower left corner, the cell-size, and a value or no-data value for each cell starting in the upper-left corner.ASC grids were used for Bathymetry, Slope, and Aspect.  Bathymetry is the depth below sea-level.  Slope is the value in degree or slope percentage between adjacent cells.  Aspect is the direction of slope between adjacent cells.  Slope and Aspect were derived from Bathymetry collected with a multibeam echo-sounder.  CSV files contain the UTM location for each coral collected and an attribute that was analyzed in MaxEnt. (Clone ID, Color, and MSAT Lineage)
DOI: 10.5061/dryad.hv87g/1
title: Crogree_StudyPops_Dvorak&Catalano_Eco&Evo2015

description: Stem measurements and seed production data for Crocanthemum greenei study populations on Santa Catalina Island.
DOI: 10.5061/dryad.jc203/1
title: Functionally annotated Corylus assembly

description: This file lists all 13,690 Coryllus avellana contigs with their annotation. We considered, for each contig (col 1), the best blast hit found in the Swissprot database (col2) and in the Non-redundant nucleotide database (col3). We associated to these contigs GO terms. GO terms IDs are listed in col4 and GO terms definition is listed in col 5 (MF: Molecular function; CC: Cellular component; BP: Biological process).
DOI: 10.5061/dryad.jc203/2
title: Corylus avellana CAV2 transcriptomic assembly

description: In this file, the 13,690 CAV2 contigs sequences are listed in fasta format.
DOI: 10.5061/dryad.jc203/3
title: C. avellana root and ECM-root sequences with T. melanosporum similarity

description: Root ("Root_" prefix) and ECM-roots ("ECM_Roots_" prefix) sequences (col 1) showing similarities with the Tuber melanosporum genome are listed in this file. Each Corylus read is associated with at least one T. melanosporum scaffold (col2).
DOI: 10.5061/dryad.jc203/4
title: Mapping of the Corylus avellana input sequences against the CAV2 assembly.

description: Alignments of the 836,641 Corylus avellana Roche sequences against the 13,690 CAV2 contigs in bam format.
DOI: 10.5061/dryad.js1gm/1
title: Data for phenology, weather sensitivity and niche overlap anlayses
DOI: 10.5061/dryad.k9c31/51
title: 56_Collinge_et_al_2006_Egg_viability

description: This data file contains egg viability for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002. When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/52
title: 58_Collinge_et_al_2006_Hsp70_locus

description: This data file contains number of genotypes (56H8/56H8, 56H8/122, 122/122 and others) and allele frequencies for hsp70 for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002. The number of alleles scored (N) is shown for each population. When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/53
title: 59_Collinge_et_al_2006_DMTRXIII_locus

description: This data file contains allele frequencies (25 alleles) for DMTRXIII for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002. DMTRXIII_MCA was the most common allele. The number of alleles scored (N) is shown for each population. When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/54
title: 60_Collinge_et_al_2006_Hsr-omega_locus

description: This data file contains number of genotypes (LL, LS and SS) and allele frequencies for hsr-omegaL/S for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002. The number of alleles scored (N) is shown for each population. When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/55
title: 61_Collinge_et_al_2006_DMU25686_locus

description: This data file contains allele frequencies (19 alleles) for DMU25686 for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002. DMU25686_MCA was the most common allele. The number of alleles scored (N) is shown for each population. When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/56
title: 62_Collinge_et_al_2006_AC008193_locus

description: This data file contains allele frequencies (17 alleles) forAC008193 for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002. AC008193_MCA was the most common allele. The number of alleles scored (N) is shown for each population. When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/57
title: 63_McKechnie_et_al_2010_Dca_MCA

description: This data set contains frequencies of the two most common alleles (MCA: 237 and 246 bp in length) in the Dca promoter region for 17 D. melanogaster populations collected in 2005 (Fig. 3). Frequencies are given for all data independent of the In(3R)P inversion and for inverted and standard arrangements only. Note longitudes in data are approximate. When using this data, please cite the original publication:McKechnie, S. W., Blacket, M. J., Song, S. V., Rako, L., Carroll, X., Johnson, T. K., Jensen, L. T., Lee, S. F., Wee, C. W., and Hoffmann, A. A. (2010). A clinally varying promoter polymorphism associated with adaptive variation in wing size in Drosophila. Molecular Ecology 19: 775-784
DOI: 10.5061/dryad.k9c31/58
title: 64_McKechnie_et_al_2010_Dca_locus

description: This data set contains allelic variation (numbers of fragments between 237 and 250 bp in length) in the Dca promoter region for 17 Drosophila melanogaster populations collected in 2005. Note longitudes in data are approximate. When using this data, please cite the original publication:McKechnie, S. W., Blacket, M. J., Song, S. V., Rako, L., Carroll, X., Johnson, T. K., Jensen, L. T., Lee, S. F., Wee, C. W., and Hoffmann, A. A. (2010). A clinally varying promoter polymorphism associated with adaptive variation in wing size in Drosophila. Molecular Ecology 19: 775-784
DOI: 10.5061/dryad.k9c31/59
title: 71_James_et_al_1997_Thorax_length_and_wing_traits

description: This data file contains means and 95% confidence limits for thorax length (mm), wing area (mm2), cell area (µm2) and cell number (x103) for females and males of 20 Drosophila melanogaster populations collected in 1993. Traits were measured for wild caught flies and laboratory reared flies after 7 and 9 months of captivity (Fig. 1). Note longitudes in data are approximate. When using this data, please cite the original publication:
James, Avis C., Azevedo, Ricardo B. R. and Partridge, Linda (1997). Genetic and Environmental Responses to Temperature of Drosophila melanogaster From a Latitudinal Cline. Genetics 146: 881-890