cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19758526.v1
title: 'Bismuth extraction by aqueous two-phase system applied in the development of an alternative bismuth film electrode'

description: The bismuth extracted by an aqueous two-phase system in fusible plugs (BiSn alloy) used as safety valves in gas cylinders, was used in the development of a new bismuth film electrode (BiATPSFE). The aqueous two-phase system (ATPS) is an environment-friendly strategy for liquid-liquid extraction, in which polymers and salts dispersed in water are adopted. In order to evaluate the electrochemical response generated by BiATPSFE, square-wave anodic stripping voltammetry (SWASV) was applied to monitor the anodic peak current (Ipa) of cadmium (Cd2+) and lead (Pb2+). The voltammetric behavior of bismuth extracted by ATPS (Bi-ATPS) compared to the standard bismuth solution (Bi-STD), showed a similar voltammetric profile between Bi-ATPS and Bi-STD. A greater electrochemical response of the analytes was observed for BiATPSFE compared to bare electrode (glassy carbon electrode; GCE). The analytical method, adopting BiATPSFE, was validated and applied to lake water samples for the simultaneous determination of Cd2+ and Pb2+. The analytical method SWASV BiATPSFE can be adopted as a screening tool for Cd2+ and Pb2+ values that exceed the concentrations recommended by environmental legislation. This work demonstrates the ability of using an electrochemical sensor in an unconventional aqueous medium and the use of secondary sources for the modification of electrodes.
DOI: 10.6084/m9.figshare.19758526
title: 'Bismuth extraction by aqueous two-phase system applied in the development of an alternative bismuth film electrode'

description: The bismuth extracted by an aqueous two-phase system in fusible plugs (BiSn alloy) used as safety valves in gas cylinders, was used in the development of a new bismuth film electrode (BiATPSFE). The aqueous two-phase system (ATPS) is an environment-friendly strategy for liquid-liquid extraction, in which polymers and salts dispersed in water are adopted. In order to evaluate the electrochemical response generated by BiATPSFE, square-wave anodic stripping voltammetry (SWASV) was applied to monitor the anodic peak current (Ipa) of cadmium (Cd2+) and lead (Pb2+). The voltammetric behavior of bismuth extracted by ATPS (Bi-ATPS) compared to the standard bismuth solution (Bi-STD), showed a similar voltammetric profile between Bi-ATPS and Bi-STD. A greater electrochemical response of the analytes was observed for BiATPSFE compared to bare electrode (glassy carbon electrode; GCE). The analytical method, adopting BiATPSFE, was validated and applied to lake water samples for the simultaneous determination of Cd2+ and Pb2+. The analytical method SWASV BiATPSFE can be adopted as a screening tool for Cd2+ and Pb2+ values that exceed the concentrations recommended by environmental legislation. This work demonstrates the ability of using an electrochemical sensor in an unconventional aqueous medium and the use of secondary sources for the modification of electrodes.
DOI: 10.5066/p9muq7ze
title: Ecological property data and experimental lab incubation results from a long-term nitrogen deposition simulation experiment in three semi-arid grasslands, Arches National Park, Utah, USA, 2013-2019

description: These data were compiled to understand the responses of dryland ecosystem properties to long-term simulated atmospheric nitrogen deposition. Objective(s) of our study were to uncover any changes in soil biogeochemistry and ecosystem properties to long-term nitrogen amendments. These data represent ecosystem property data compiled over the nine-year history of a nitrogen deposition simulation experiment. These data were collected from three sites representing a gradient of soil texture in Arches National Park. Data collection began in 2013 and continued through 2019, though metrics were collected at a range of intervals within that timeframe. These data were collected by U.S. Geological Survey field technicians using a wide range of field and laboratory techniques. These data can be used to track the consequences of atmospheric nitrogen deposition on rural dryland ecosystems through time.
DOI: 10.5281/zenodo.6544101
title: GPT-2 generated form fields

description: This dataset is a single json containing label-value form fields generated using GPT-2. This data was used to train <strong>Dessurt</strong> (https://arxiv.org/abs/2203.16618). Details of the generation process can be found in Dessurt's Supplementary Materials and the script used to generate it is <em>gpt_forms.py</em> in https://github.com/herobd/dessurt The data has groups of label-value pairs each with a "title" or topic (or null). Each label-value pair group was generated in a single GPT-2 generation and thus the pairs "belong to the same form." The json structure is a list of tuples, where each tuple has the title or null as the first element and the list of label-value pairs of the group as the second element. Each label-value pair is another tuple with the first element being the label and the second being the value or a list of values. For example: [ ["title",[ ["first label", "first value"], ["second label", ["a label", "another label"] ] ] ], [null, [ ["again label", "again value"] ] ] ]
DOI: 10.5281/zenodo.6544100
title: GPT-2 generated form fields

description: This dataset is a single json containing label-value form fields generated using GPT-2. This data was used to train <strong>Dessurt</strong> (https://arxiv.org/abs/2203.16618). Details of the generation process can be found in Dessurt's Supplementary Materials and the script used to generate it is <em>gpt_forms.py</em> in https://github.com/herobd/dessurt The data has groups of label-value pairs each with a "title" or topic (or null). Each label-value pair group was generated in a single GPT-2 generation and thus the pairs "belong to the same form." The json structure is a list of tuples, where each tuple has the title or null as the first element and the list of label-value pairs of the group as the second element. Each label-value pair is another tuple with the first element being the label and the second being the value or a list of values. For example: [ ["title",[ ["first label", "first value"], ["second label", ["a label", "another label"] ] ] ], [null, [ ["again label", "again value"] ] ] ]
DOI: 10.25550/17-1qc6
title: Collective Migration in Palate Fusion

description: Tissue fusion frequently requires the removal of an epithelium intervening distinct primordia to form one continuous structure. In the mammalian secondary palate, a midline epithelial seam (MES) forms between two palatal shelves and must be removed to allow mesenchymal confluence. Abundant apoptosis and cell extrusion support their importance in MES removal. However, genetically disrupting the intrinsic apoptotic regulators BAX and BAK within the MES, results in complete loss of cell death and cell extrusion, but successful removal of the MES. Novel static and live imaging approaches reveal that the MES is removed through streaming migration of epithelial trails and islands to reach the oral and nasal epithelial surfaces. Epithelial trail cells that express the basal epithelial marker ΔNp63 begin to also express periderm markers, suggesting migration is concomitant with differentiation. Live imaging reveals anisotropic actomyosin contractility within epithelial trails, and genetic ablation of actomyosin contractility results in dispersion of epithelial collectives and failure of normal MES migration. These findings demonstrate redundancy between cellular mechanisms of morphogenesis and reveal a crucial and unique form of collective epithelial migration during tissue fusion.
DOI: 10.5519/qd.i436de1w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (14 records)
DOI: 10.5281/zenodo.6463260
title: Glycemic Control After Sleeve Gastrectomy in Taif Hospitals, Kingdom of Saudi Arabia

description: data for retrospective study based on retrieving the required information from patient's files in Medical Records Departments for type II diabetic overweight and obese patients who underwent LSG in Taif, from January 2017 to December 2019. The follow-up duration for all patient was three-to-six months postoperatively. A total of 96 patients were included in the study. Data collected included baseline characteristics, blood glucose indices and other routine laboratory tests.We conducted a retrospective study based on retrieving the required information from patient's files in Medical Records Departments for type II diabetic overweight and obese patients who underwent LSG in Taif, from January 2017 to December 2019. The follow-up duration for all patient was three-to-six months postoperatively. A total of 96 patients were included in the study. Data collected included baseline characteristics, blood glucose indices and other routine laboratory tests.
description: عاممر بن الاسود Shehar street
DOI: 10.5281/zenodo.6463259
title: Glycemic Control After Sleeve Gastrectomy in Taif Hospitals, Kingdom of Saudi Arabia

description: data for retrospective study based on retrieving the required information from patient's files in Medical Records Departments for type II diabetic overweight and obese patients who underwent LSG in Taif, from January 2017 to December 2019. The follow-up duration for all patient was three-to-six months postoperatively. A total of 96 patients were included in the study. Data collected included baseline characteristics, blood glucose indices and other routine laboratory tests.We conducted a retrospective study based on retrieving the required information from patient's files in Medical Records Departments for type II diabetic overweight and obese patients who underwent LSG in Taif, from January 2017 to December 2019. The follow-up duration for all patient was three-to-six months postoperatively. A total of 96 patients were included in the study. Data collected included baseline characteristics, blood glucose indices and other routine laboratory tests.
description: عاممر بن الاسود Shehar street
DOI: 10.6084/m9.figshare.19755463
title: TCC_Leide - Dados tabulados (versão final).xlsx

description: Estes dados foram reunidos e organizados com o objetivo de servir de arcabouço para uma pesquisa que ob jetiva mapear e investigar a produção científica referente aos estudos bibliométricos que estão indexadas na Base de Dados Referenciais de Artigos de Periódicos em Ciência da Informação (Brapci). São dados referentes ao Trabalho de Conclusão de Curso elaborado por Leide Jane Cruz Vieira e defendido em 2022.
DOI: 10.5519/qd.noh319p7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (15 records)
DOI: 10.6084/m9.figshare.19758472.v1
title: Table_Score Distribution.xlsx

description: Distribution of gender identity/sexual orientation score.
DOI: 10.6084/m9.figshare.19758472
title: Table_Score Distribution.xlsx

description: Distribution of gender identity/sexual orientation score.
DOI: 10.5281/zenodo.6544305
title: DisiMiR Supplemental Material

description: Supplemental Material for the paper "<strong>DisiMiR: Predicting Pathogenic miRNAs using Network Influence and miRNA Conservation." </strong><br> <br> The following supplemental tables show the hypotheses that were returned on the PubMED Entrez API when the hypothesis miR name was queried along with the relevant disease. If the literature returned was not disease relevant, it was removed from consideration. If the abstract or the manuscript demonstrated that the miRNA played a causal role in the given disease, the hypothesis was marked as pathogenic and the PMIDs for the relevant papers was provided. All miRNA queries were performed on 5/12/22.
DOI: 10.5281/zenodo.6544304
title: DisiMiR Supplemental Material

description: Supplemental Material for the paper "<strong>DisiMiR: Predicting Pathogenic miRNAs using Network Influence and miRNA Conservation." </strong><br> <br> The following supplemental tables show the hypotheses that were returned on the PubMED Entrez API when the hypothesis miR name was queried along with the relevant disease. If the literature returned was not disease relevant, it was removed from consideration. If the abstract or the manuscript demonstrated that the miRNA played a causal role in the given disease, the hypothesis was marked as pathogenic and the PMIDs for the relevant papers was provided. All miRNA queries were performed on 5/12/22.
DOI: 10.5281/zenodo.6538637
title: Optimizing Nozzle Travel Time in Proton Therapy [Dataset]

description: Dataset of instances taken into account by the paper, together with solutions and achieved computational time. Manuscript submitted to 2022 IEEE-CBMS. <em>ABSTRACT - Proton therapy is an oncological therapy that is more expensive than classical radiotherapy but that is considered the gold standard in several situations. Moreover, since there is still a limited amount of delivering facilities for this techniques, it is fundamental to increase the number of treated patients over time.<br> The objective of this work is to offer an insight on the problem of the optimization of the part of the delivery time of a treatment plan that relates to the movements of the system. We denote it as the Nozzle Travel Time Problem (NTTP), in analogy with the Leaf Travel Time Problem (LTTP) in classical radiotherapy.<br> In particular this work: (i) describes a mathematical model for the delivery system and formalize the optimization problem for finding the optimal sequence of movements of the system (nozzle and bed) that satisfies the covering of the prescribed irradiation directions; (ii) provides an optimization pipeline that solves the problem for instances with an amount of irradiation directions much greater than those usually employed in the clinical practice; (iii) reports preliminary results about the effects of employing two different resolution strategies within the aforementioned pipeline, that rely on an exact Traveling Salesmna Problem (TSP) solver (Concorde) and an efficient heuristic Vehicle Routing Open-source Optimization Machine (VROOM).</em> For each combination of system features (SF1, SF2, SF3) and distance metric (L1 and Linf), 50 runs (5 session by 10 runs) with prescribed fields from 5 to 100 (step 5) have been executed. - 'grph' folder contains GTSP and ATSP instances in GraphML and txt format. - 'vrinst' folder contains ATSP instances, expressed as VRP instances, in json format, to be fed into VROOM - 'tsps' folder contains symmetric TSP instances in TSPLIB format to be fed into Concorde - 'ress' folder contains result of optimizzation obtained by Concorde (.sol and .res formats) and VROOM (.json) all the files in these folders is named as [SF#]_[distanceMetric][[prescribedFields#]_[subrun]][Session8charsCode], so that, for example "SF3_Linf[100_9]2e275d41" represents the 100 fields result of the 9th subrun of the session with code 2e275d41, where SF3 and Linf norm have been taken into account. - 'resultsNPY' folder contains .npy file about computation time and computed travel time for both solvers
DOI: 10.6084/m9.figshare.19758628
title: Gender identity and sexual orientation

description: 80 VCF files used for the genetic assessment.
DOI: 10.18112/openneuro.ds004097.v1.0.2
title: An open-access accelerated adult equivalent of the ABCD Study neuroimaging dataset (a-ABCD)
DOI: 10.6084/m9.figshare.17885942.v1
title: Data Manuscript Female Competition Redfronted Lemurs

description: R-scripts and original data used to assess group composition during female eviction and male emigration events.
DOI: 10.6084/m9.figshare.17885942
title: Data Manuscript Female Competition Redfronted Lemurs

description: R-scripts and original data used to assess group composition during female eviction and male emigration events.
DOI: 10.6084/m9.figshare.19384031.v1
title: Variation and Covariation in Large-scale Replication Projects: An Evaluation of Replicability

description: Over the last decade, large-scale replication projects across the biomedical and social sciences have reported relatively low replication rates. In these large-scale replication projects, replication has typically been evaluated based on a single replication study of some original study and dichotomously as successful or failed. However, evaluations of replicability based on a single study and as dichotomous are inadequate, and evaluations of replicability should instead be based on multiple studies, be continuous, and be multi-faceted. Further, such evaluations are in fact possible due to two features shared by many large-scale replication projects. In this paper, we provide such an evaluation for two prominent large-scale replication projects, one which replicated a phenomenon from cognitive psychology and another which replicated 13 phenomena from social psychology and behavioral economics. Our results indicate a very high degree of replicability in the former (e.g., variation ranging from 15 to 17 milliseconds across variates and 2 to 3 milliseconds across effects at the lab level) and a medium to low degree of replicability in the latter (e.g., variation ranging from 0.11 to 0.69 <i>σ<sub>d</sub></i> across variates and 0.09 to 0.79 <i>σ<sub>d</sub></i> across effects at the lab level). They also suggest an unidentified covariate in each, namely ocular dominance in the former and political ideology in the latter, that is theoretically pertinent. They finally have implications for evaluations of replicability at large, recommendations for future large-scale replication projects, and design-based model generalization.
DOI: 10.5281/zenodo.6536366
title: Wikipedia rendered as synthetic handwriting

description: This is the synthetic handwriting data used to pre-train <strong>Dessurt</strong> (https://arxiv.org/abs/2203.16618). It is text sampled from Wikipedia and generated with the method described in "Text and Style Conditioned GAN for Generation of Offline Handwriting Lines" (https://arxiv.org/abs/2009.00678). More data can be quite easily obtained using this code: https://github.com/herobd/handwriting_line_generation Inside the tar is a single directory with ~800k generated handwriting line images ("sample_0.png", "sample_123.png", "sample_3292524.png", etc.), and "OUT.txt" which has the GT for each line image.
DOI: 10.5281/zenodo.6536365
title: Wikipedia rendered as synthetic handwriting

description: This is the synthetic handwriting data used to pre-train <strong>Dessurt</strong> (https://arxiv.org/abs/2203.16618). It is text sampled from Wikipedia and generated with the method described in "Text and Style Conditioned GAN for Generation of Offline Handwriting Lines" (https://arxiv.org/abs/2009.00678). More data can be quite easily obtained using this code: https://github.com/herobd/handwriting_line_generation Inside the tar is a single directory with ~800k generated handwriting line images ("sample_0.png", "sample_123.png", "sample_3292524.png", etc.), and "OUT.txt" which has the GT for each line image.
DOI: 10.3886/e170281
title: COVID-19 crisis in Cambodia: A dataset containing linked survey and administrative data of ninth-graders in rural areas

description: Between 2019 and 2021, we collected detailed administrative data of grade 9 students from 54 lower-secondary schools in rural Cambodia. We also collected phone-survey data from these students in July and August 2020, to understand the implications of the nation-wide lockdown, that was implemented to curb the spread of COVID-19 in March 2020. The administrative data contain information on students' grades, school characteristics and teacher characteristics from the school year 2019-2020, as well as information about the students' enrollment in high school after the end of the school year (January 2021). This information is available for 3,258 students. The phone-survey data contains information on students' socio-economic background, parental education and occupation, as well as students' study behavior, time use, educational aspirations and expectations, and perceptions of the COVID-19 crisis. This information is available for 2,197 students.
description: Administrative data were collected from grade 9 students of 54 lower-secondary schools across four provinces in Northwest Cambodia. Sample schools were eligible for high school scholarships provided by Child's Dream, an international NGO (65% of schools), or similar in characteristics to these schools and from neighboring districts (35% of schools). For the phone-survey, one or two classes of grade 9 were randomly selected to participate in the phone-survey, of these classes all students were contacted. Students were asked for informed consent before the interview.
description: Students of grade 9.
description: telephone interview;
DOI: 10.5281/zenodo.6540454
title: Tesseract OCR of IIT-CDIP Dataset

description: This is Tesseract generated <strong>transcriptions (no images)</strong> of (most of) the IIT-CDIP dataset. To download the images of the IIT-CDIP dataset go to https://data.nist.gov/od/id/mds2-2531 The directory struture of this dataset is the same as the IIT-CDIP dataset (although has everything in one tar, with "a.a", "a.b", ... directories) and can thus be combine with the image IIT-CDIP dataset using rsync or similar tool. This dataset contains a "X.layout.json" for each "X.png" in the IIT-CDIP dataset (doesn't have sections 'a', 'w', 'x', 'y', and 'z'). The jsons contain block/paragraph, line and word bounding boxes, with transcriptions for the words following the Tesseract format. The line and word annotations are directly taken from Tesseract. The block and paragraph output of Tesseract was discarded. The images were then run through both the Publaynet and PrimaNet models available on LayoutParser (https://layout-parser.github.io/). The combine output of these models became the block/paragraph annotations (we kept the Tesseract output format, but each block has 1 paragraph of exactly the same shape). <strong>Important:</strong> There is also a "rotation" value in the json (0, 90, 180, or 270) indicating the json may be for a rotated version of the IIT-CDIP image by the given amount (attempted to rotated documents to upright position to get better OCR results). These are the annotations used to pre-train <strong>Dessurt</strong> (https://arxiv.org/abs/2203.16618). These annotations will be worse than those that would be obtained using a commercial OCR system (like those used to pre-train LayoutLMv2/v3). The code used to produce these annotations is available here: https://github.com/herobd/ocr