cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/fr78-g115
title: Baseline 5b

description: This is the same as baseline 5, but a post processing step has been added. I average out each monthly value over the previous and next month.Let's take an example, if we want to predict the missing months of the smart meters which signe up in May (we want to predict January, february, March and April), the following steps are applied : 1. We want to make a prediction for the smart meters that signed up in May (There are +/- 270 that sign up in May out of the 3258 smart meters) 2. Select all the smart meters that signed up in May or earlier (+/- 1350 smart meters = 270 x 5 smart meters = the 270 that sign up in January + the 270 in Feb + 270 in March + 270 in April + 270 in May) 3. Apply Kmeans clustering using DTW on the 1350 selected smart meters based on the data from May to December.4. To predict April : compute the average consumption for the month of April for each cluster, based on the smart meters which have data in April. 5. This average consumption is than repeated for the member of the cluster which have no data for April. 6. For each smart meter, to re-compute April : (Mar + April + May)/3
DOI: 10.6073/pasta/266bff04cccfc31d0e70a7ca7ea5a62b
title: Jornada Basin LTER: Wireless meteorological station at NPP M-RABB site: 5-minute summary wind and air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP M-RABB met station. Average air temperature, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-NORT site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/1bd980f4620111248d6dfd2e56f15c65
title: Jornada Basin LTER: Wireless meteorological station at NPP M-RABB site: 1-second summary precipitation data: 2013 - ongoing

description: 1-second summary precipitation data at NPP M-RABB met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER NPP M-RABB site.. This climate station is operated by the Jornada LTER Program. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437023, knb-lter-jrn.210437038, and knb-lter-jrn.210437053 for the NPP M-RABB met station 30 minute, hourly, and daily summary datasets, respectively. This is an ONGOING dataset.
DOI: 10.5281/zenodo.3363065
title: Supplementary data to accompany "Abundant metabolite-matrix adducts illuminate the dark metabolome of MALDI-mass-spectrometry imaging datasets"

description: This dataset accompanies the publication "Abundant metabolite-matrix adducts illuminate the dark metabolome of MALDI-mass-spectrometry imaging datasets". The dataset includes all files, scripts and results that are included in the associated publication. Spatial metabolomics using mass spectrometry imaging (MSI) is a powerful tool to map hundreds or thousands of metabolites across biological systems. One major challenge is the complexity of the data, which includes signals from experimental artifacts. Formation of adducts (<em>e.g. </em>with Na+or K+) or abundant matrix-cluster, in the case of matrix-assisted laser desorption ionization (MALDI)-MSI, strongly increase peak counts. We developed <em>mass2adduct</em>, a universally applicable tool for adduct abundance estimations in high-mass-resolution spatial metabolomics datasets. Our study illustrates that MALDI-MSI data density is remarkably driven by adduct formation and revealed a major influence of so far unrecognized metabolite-matrix adducts on total peak counts. Current data analyses neglect those matrix adducts and therefore overestimate total metabolite numbers, thereby inflating the dark metabolome size. mass2adduct zenodo doi (10.5281/zenodo.1405088) mass2adduct gihub: https://github.com/kbseah/mass2adduct
DOI: 10.5281/zenodo.3363064
title: Supplementary data to accompany "Abundant metabolite-matrix adducts illuminate the dark metabolome of MALDI-mass-spectrometry imaging datasets"

description: This dataset accompanies the publication "Abundant metabolite-matrix adducts illuminate the dark metabolome of MALDI-mass-spectrometry imaging datasets". The dataset includes all files, scripts and results that are included in the associated publication. Spatial metabolomics using mass spectrometry imaging (MSI) is a powerful tool to map hundreds or thousands of metabolites across biological systems. One major challenge is the complexity of the data, which includes signals from experimental artifacts. Formation of adducts (<em>e.g. </em>with Na+or K+) or abundant matrix-cluster, in the case of matrix-assisted laser desorption ionization (MALDI)-MSI, strongly increase peak counts. We developed <em>mass2adduct</em>, a universally applicable tool for adduct abundance estimations in high-mass-resolution spatial metabolomics datasets. Our study illustrates that MALDI-MSI data density is remarkably driven by adduct formation and revealed a major influence of so far unrecognized metabolite-matrix adducts on total peak counts. Current data analyses neglect those matrix adducts and therefore overestimate total metabolite numbers, thereby inflating the dark metabolome size. mass2adduct zenodo doi (10.5281/zenodo.1405088) mass2adduct gihub: https://github.com/kbseah/mass2adduct
DOI: 10.5281/zenodo.4265383
title: Human T-box transcription factor T (Brachyury); A Target Enabling Package

description: Chordoma is a rare cancer occurring along the spinal cord (OMIM: 215400). Chordoma is derived from an embryonic tissue, the notochord, and over-expresses the embryonic transcription factor T-box transcription factor T, the homologue of mouse Brachyury. Chordomas are “genomicaly silent” cancers that do not carry an extensive mutation load. Recent studies indicate that expression of TBXT is essential for persistence and growth of chordoma cells. As TBXT is not expressed in any post-embryonic tissues, it could be an excellent target for treatment of chordoma. The long-term aim of this project is to test whether TBXT can be targeted with small molecules with sufficient affinity and specificity to be therapeutically useful. In this TEP we have determined crystal structures of the DNA-binding domain (DBD) of TBXT with and without cognate DNA oligonucleotides. The DNA-free protein crystals were used in a high-throughput fragment screen to identify 29 fragments bound in 6 clusters. The crystal structures of the bound fragments provide starting points for development of stronger binders which could be used to disrupt TBXT activity or to induce the degradation of the protein through a Proteolysis-targeting chimeric molecule (PROTAC) approach.
description: This document represents version 1 of the TEP datasheet and includes all updates on the project as of November 2020. For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep
DOI: 10.5281/zenodo.4265333
title: Human T-box transcription factor T (Brachyury); A Target Enabling Package

description: Chordoma is a rare cancer occurring along the spinal cord (OMIM: 215400). Chordoma is derived from an embryonic tissue, the notochord, and over-expresses the embryonic transcription factor T-box transcription factor T, the homologue of mouse Brachyury. Chordomas are “genomicaly silent” cancers that do not carry an extensive mutation load. Recent studies indicate that expression of TBXT is essential for persistence and growth of chordoma cells. As TBXT is not expressed in any post-embryonic tissues, it could be an excellent target for treatment of chordoma. The long-term aim of this project is to test whether TBXT can be targeted with small molecules with sufficient affinity and specificity to be therapeutically useful. In this TEP we have determined crystal structures of the DNA-binding domain (DBD) of TBXT with and without cognate DNA oligonucleotides. The DNA-free protein crystals were used in a high-throughput fragment screen to identify 29 fragments bound in 6 clusters. The crystal structures of the bound fragments provide starting points for development of stronger binders which could be used to disrupt TBXT activity or to induce the degradation of the protein through a Proteolysis-targeting chimeric molecule (PROTAC) approach.
description: This document represents version 1 of the TEP datasheet and includes all updates on the project as of November 2020. For more information about TEPs and the TEP Programme, please visit https://thesgc.org/tep
DOI: 10.6084/m9.figshare.11774640.v3
title: iriR: An R Package for the EU Industrial Research and Industry Scoreboard

description: The Economics of Industrial Research & Innovation (IRI) is a scientific project carried out within the Directorate B: Growth and Innovation, one of the seven scientific institutes of the European Commission's Joint Research Centre (JRC) (). 'iriR' objective is to allows an easy connection with R to the European Commission's Economics of Industrial Research and Innovation data.
DOI: 10.6084/m9.figshare.11774640
title: iriR: An R Package for the EU Industrial R&D Investment Scoreboard

description: The Industrial R&D Investment Scoreboard (IRI) is a scientific project carried out within the Directorate B of Growth and Innovation, one of the seven scientific institutes of the European Commission's Joint Research Centre (JRC). 'iriR' 's objective is to allow an easy connection with R to the European Commission's Economics of Industrial Research and Innovation data.
DOI: 10.6084/m9.figshare.11774640.v5
title: iriR: An R Package for the EU Industrial R&D Investment Scoreboard

description: The Industrial R&D Investment Scoreboard (IRI) is a scientific project carried out within the Directorate B of Growth and Innovation, one of the seven scientific institutes of the European Commission's Joint Research Centre (JRC). 'iriR' 's objective is to allow an easy connection with R to the European Commission's Economics of Industrial Research and Innovation data.
DOI: 10.5519/qd.p49zueff
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5387 records)
DOI: 10.7267/pn89df234
title: Hyperspectral imagery of Pinus strobiformis infected with fungal pathogen

description: Hyperspectral images were taken from March till October, 2018, of southwestern white pine (Pinus strobiformis), SWWP, seedlings of ten different seed-source families. Half of the seedlings were inoculated with white pine blister rust (Cronartium ribicola). Visual assessments of vigor coincided with hyperspectral data acquisition. 
The aim of the experiment was to use hyperspectral data to automaticaly and objectively identify infection and degree of infection in SWWP seedlings. Moreover, we developed and evaluated a feature importance algorithm to identify the most usefull hyperspectral features for classification tasks.
DOI: 10.25810/6ycq-ek62
title: Dataset associated with floodplain large wood and organic matter jam formation after a large flood: investigating the influence of floodplain forest stand characteristics and river corridor morphology 

description: River corridors play an important role in the carbon cycle as sites of carbon transport, storage, and transformation. Floodplain soil organic carbon (OC) and dead, downed large wood (LW) are two of the largest OC stocks in rivers. Human modifications of river corridors, such as damming and floodplain land-use change, have likely modified floodplain OC storage and retention. We measured floodplain soil OC and downed LW loads on three rivers in northern Sweden that display a gradient in the degree of human alteration. The Muddus River is located in a national park and is unaltered. The Vindel River is free-flowing but has been modified via logging and other land-use changes within the floodplain. The Ume River is dammed along its length and has also experienced floodplain logging and land-use change. We used statistical models to determine which factors are associated with differences in soil OC and LW among rivers with different degrees of human alteration. We find the highest soil OC concentrations on the unaltered Muddus River (mean = 3.70%; median = 3.81%), with lower soil OC along the Vindel (mean = 1.44%; median = 0.72%) and Ume (mean = 2.47%; median = 1.12%) Rivers. The Muddus River also has the highest downed LW loads (mean = 22.25 m3 ha-1) compared to the Vindel (mean = 3.10 m3 ha-1) and Ume (mean = 7.26 m3 ha-1) Rivers. Variations in soil OC and downed large wood loads indicate that damming may reduce floodplain OC in these boreal systems through reducing lateral channel-floodplain connectivity and longitudinal connectivity. Logging and other land-use changes likely reduce OC inputs to the floodplain surface through removal of organic matter and LW. Further research is needed to elucidate the impact of human modifications on floodplain OC across diverse regions.

This dataset is presented and described in the article: Lininger, K.B., and L.E. Polvi. In review. Evaluating floodplain organic carbon across a gradient of human alteration in the boreal zone. These data describe soil organic carbon concentrations, soil organic carbon stocks, and downed large wood loads in the floodplains of the Muddus, Vindel, and Ume Rivers in northern Sweden. Fieldwork was conducted in Summer 2016, and laboratory work was conducted in 2017 and 2018.
DOI: 10.5281/zenodo.4265394
title: Exploring 12-Year Trends in Childhood Obesity Prevalence for the Republic of Ireland – A National Study Using Survey Data from 2002 and 2014

description: This research examines 12-year trends in the prevalence of overweight and obesity, including trends in socioeconomic disparities, among primary-school-aged children in the Republic of Ireland between 2002 and 2014.<br> Two large-scale oral health cross-sectional surveys of primary-school-aged children aged 4–13 years were conducted twelve years apart in 2002 (n=14,055) and 2014 (n=5,272; response rates: 68% and 67%, respectively). Both surveys included standardised and calibrated height and weight measures. Ownership of a means-tested medical card determined economic status. Prevalence of overweight and obesity was determined using Standard International Obesity Task Force criteria. Aggregate data and supporting metadata are made available here.
DOI: 10.5281/zenodo.4127252
title: Exploring 12-Year Trends in Childhood Obesity Prevalence for the Republic of Ireland – A National Study Using Survey Data from 2002 and 2014

description: This research examines 12-year trends in the prevalence of overweight and obesity, including trends in socioeconomic disparities, among primary-school-aged children in the Republic of Ireland between 2002 and 2014.<br> Two large-scale oral health cross-sectional surveys of primary-school-aged children aged 4–13 years were conducted twelve years apart in 2002 (n=14,055) and 2014 (n=5,272; response rates: 68% and 67%, respectively). Both surveys included standardised and calibrated height and weight measures. Ownership of a means-tested medical card determined economic status. Prevalence of overweight and obesity was determined using Standard International Obesity Task Force criteria. Aggregate data and supporting metadata are made available here.
DOI: 10.6073/pasta/d9aa552f9e4f6c426a8da0aaf2e129e6
title: Jornada Basin LTER: Wireless meteorological station at NPP M-WELL site: 5-minute summary wind and air temperature data: 2013 - ongoing

description: 5-minute summary data at NPP M-WELL met station. Average air temperature, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-WELL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/8d8a23ba254d1e7f65a26217def74300
title: Jornada Basin LTER: Wireless meteorological station at NPP M-WELL site: 1-hour summary data: 2013 - ongoing

description: Hourly summary data at NPP M-WELL met station. Average/maximum/minimum air temperature; average relative humidity and wind direction; average/maximum wind speed. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-WELL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.5281/zenodo.4265398
title: Mitometer data

description: Datasets for figure 4 and 5 of the Mitometer paper. These include mitochondria track features for 2D, 3D, and FLIM images.
DOI: 10.5281/zenodo.4265397
title: Mitometer data

description: Datasets for figure 4 and 5 of the Mitometer paper. These include mitochondria track features for 2D, 3D, and FLIM images.
DOI: 10.5281/zenodo.4265402
title: Práctica 1. Información bursátil de una compañía cotizada en el IBEX35

description: Esta es la primera práctica de la asignatura Tipología y ciclo de vida de los datos, impartida en el Máster de Ciencia de Datos de la Universitat Oberta de Catalunya. Se emplean técnicas de Web Scraping mediante el lenguaje de programción Python, además de sus librerías BeautifulSoup y lxml. La información se ha extraído de www.bolsamadrid.es y el conjunto de datos hace referencia a cualquier empresa del IBEX35.
DOI: 10.5281/zenodo.4265401
title: Práctica 1. Información bursátil de una compañía cotizada en el IBEX35

description: Esta es la primera práctica de la asignatura Tipología y ciclo de vida de los datos, impartida en el Máster de Ciencia de Datos de la Universitat Oberta de Catalunya. Se emplean técnicas de Web Scraping mediante el lenguaje de programción Python, además de sus librerías BeautifulSoup y lxml. La información se ha extraído de www.bolsamadrid.es y el conjunto de datos hace referencia a cualquier empresa del IBEX35.
DOI: 10.6073/pasta/cb0f5fadd83cc1beadae6287d58c4a77
title: Jornada Basin LTER: Wireless meteorological station at NPP M-WELL site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP M-WELL met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-WELL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/11a650d79ed43308d649072437fd8268
title: Jornada Basin LTER: Wireless meteorological station at NPP M-WELL site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP M-WELL met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-WELL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.5281/zenodo.4265096
title: Best Books Ever Dataset

description: The dataset has been collected in the frame of the Prac1 of the subject Tipology and Data Life Cycle of the Master's Degree in Data Science of the Universitat Oberta de Catalunya (UOC). The dataset contains 25 variables and 52478 records corresponding to books on the GoodReads Best Books Ever list (the larges list on the site). Original code used to retrieve the dataset can be found on github repository: github.com/scostap/goodreads_bbe_dataset The data was retrieved in two sets, the first 30000 books and then the remainig 22478. Dates were not parsed and reformated on the second chunk so publishDate and firstPublishDate are representet in a mm/dd/yyyy format for the first 30000 records and Month Day Year for the rest. Book cover images can be optionally downloaded from the url in the 'coverImg' field. Python code for doing so and an example can be found on the github repo. The 25 fields of the dataset are: <pre><code class="language-markdown">| Attributes | Definition | Completeness | | ------------- | ------------- | ------------- | | bookId | Book Identifier as in goodreads.com | 100 | | title | Book title | 100 | | series | Series Name | 45 | | author | Book's Author | 100 | | rating | Global goodreads rating | 100 | | description | Book's description | 97 | | language | Book's language | 93 | | isbn | Book's ISBN | 92 | | genres | Book's genres | 91 | | characters | Main characters | 26 | | bookFormat | Type of binding | 97 | | edition | Type of edition (ex. Anniversary Edition) | 9 | | pages | Number of pages | 96 | | publisher | Editorial | 93 | | publishDate | publication date | 98 | | firstPublishDate | Publication date of first edition | 59 | | awards | List of awards | 20 | | numRatings | Number of total ratings | 100 | | ratingsByStars | Number of ratings by stars | 97 | | likedPercent | Derived field, percent of ratings over 2 starts (as in GoodReads) | 99 | | setting | Story setting | 22 | | coverImg | URL to cover image | 99 | | bbeScore | Score in Best Books Ever list | 100 | | bbeVotes | Number of votes in Best Books Ever list | 100 | | price | Book's price (extracted from Iberlibro) | 73 |</code></pre>