cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5955643
title: Paroedura_picta_gene.v1.cds.fa

description: The coding nuceotide sequences of the predicted genes in the Madagascar ground gecko (<i>Paroedura picta</i>) genome assembly.
DOI: 10.6084/m9.figshare.5955622
title: Paroedura_picta_gene.v1.pep.fa

description: The peptide sequences of the predicted genes in the Madagascar ground gecko (<i>Paroedura picta</i>) genome assembly.
DOI: 10.6084/m9.figshare.5955622.v1
title: Paroedura_picta_gene.v1.pep.fa

description: The peptide sequences of the predicted genes in the Madagascar ground gecko (<i>Paroedura picta</i>) genome assembly.
DOI: 10.6084/m9.figshare.5955616
title: JGR-Pub

description: READF.F is used for obtaining the parameters of the rope;CHKMGT.F is used for the energy analysis;The files containing the flux rope system in the initial condition and in the catastrophic condition.<br>
DOI: 10.6084/m9.figshare.5955607
title: Supplementary Material for: Effects of Gene Variants Controlling Vitamin D Metabolism and Serum Levels on Hepatic Steatosis

description: <b><i>Background/Aims:</i></b> Common genetic variations in vitamin D metabolism are associated with liver stiffness. Whether these genes are implicated in hepatic steatosis remains unclear. Here we aimed to analyse the association of common vitamin D pathway gene variants with liver steatosis. <b><i>Methods:</i></b> Liver steatosis was assessed non-invasively in 241 patients with chronic liver conditions by controlled attenuation parameter (CAP). The following polymorphisms were genotyped using TaqMan assays: group-specific component (<i>GC</i>) rs7041, 7-dehydrocholesterol reductase (<i>DHCR7</i>) rs12785878, cytochrome P450 2R1 (<i>CYP2R1</i>) rs10741657, ­vitamin D receptor (<i>VDR</i>) rs7974353. Chemiluminescence immunoassay determined serum 25-hydroxyvitamin D (25(OH) D) concentrations. <b><i>Results:</i></b> Vitamin D deficiency (defined by 25(OH)D concentrations &lt;20 ng/mL) occurred in 66% of patients. Median CAP was 296 (100–400) dB/m. Patients with advanced steatosis (CAP ≥280 dB/m) had significantly (<i>p</i> = 0.033) lower 25(OH)D levels as compared to patients with CAP &lt;280 dB/m. Moreover, the rare allele [T] in <i>GC</i> rs7041 was significantly (<i>p</i> = 0.018) associated with higher 25(OH)D levels in patients with CAP &lt;280 dB/m. However, <i>GC</i>, <i>DHCR7,</i> <i>CYP2R1</i>, and <i>VDR</i> polymorphisms were not related to liver steatosis and obesity traits. <b><i>Conclusions:</i></b> Higher CAP values are associated with low serum 25(OH)D concentrations but not with common vitamin D pathway gene variants.
DOI: 10.6084/m9.figshare.5955595
title: Experiment 2: Three series of applied DC voltage pulses and small signal conductance measurements after each series

description: <b>Description</b><br>It was possible to classify the human skin memristor either as volatile or non-volatile by this experiment. The data was collected from three different skin sites (earlobe, fingertip, forehead) simultaneously. The recordings were done on 28 test subjects. <br><br><b>Experimental Design</b><br>Experiment 2 consisted of three series of applied DC voltage pulses. The voltage steps were always from 0 V to -0.8 V (first and third series) and 0 to + 0.8 V (second series). Resulting current, i, through the skin was measured. Each single pulse had a duration of 15 seconds in high state, followed by 5 seconds in low state (0 Volts). A continuation of 9 pulses was applied; the total duration per pulse series was three minutes. Electrodermal activity (EDA) (including small-signal conductance) was measured for three minutes after each DC pulse series. The change between recording modes was performed manually. <br><br><b>File information</b><br>The recordings are presented in the same order as they were conducted. <br><br><i>"Data_experiment_2 (DC Pulse_series)"</i>: The number of samples N per signal period (including 15 seconds in high state, followed by 5 seconds in low state) is 500. The Samples 1 to 4501 in each line reflect 9 periods of the corresponding signal. <br>
DOI: 10.6084/m9.figshare.5955595.v1
title: Experiment 2: Three series of applied DC voltage pulses and small signal conductance measurements after each series

description: <b>Description</b><br>It was possible to classify the human skin memristor either as volatile or non-volatile by this experiment. The data was collected from three different skin sites (earlobe, fingertip, forehead) simultaneously. The recordings were done on 28 test subjects. <br><br><b>Experimental Design</b><br>Experiment 2 consisted of three series of applied DC voltage pulses. The voltage steps were always from 0 V to -0.8 V (first and third series) and 0 to + 0.8 V (second series). Resulting current, i, through the skin was measured. Each single pulse had a duration of 15 seconds in high state, followed by 5 seconds in low state (0 Volts). A continuation of 9 pulses was applied; the total duration per pulse series was three minutes. Electrodermal activity (EDA) (including small-signal conductance) was measured for three minutes after each DC pulse series. The change between recording modes was performed manually. <br><br><b>File information</b><br>The recordings are presented in the same order as they were conducted. <br><br><i>"Data_experiment_2 (DC Pulse_series)"</i>: The number of samples N per signal period (including 15 seconds in high state, followed by 5 seconds in low state) is 500. The Samples 1 to 4501 in each line reflect 9 periods of the corresponding signal. <br>
DOI: 10.6084/m9.figshare.5955430
title: Additional file 3: of Income inequality and cardiovascular disease risk factors in a highly unequal country: a fixed-effects analysis from South Africa

description: Model results. (XLSX 89Â kb)
DOI: 10.6084/m9.figshare.5955430.v1
title: Additional file 3: of Income inequality and cardiovascular disease risk factors in a highly unequal country: a fixed-effects analysis from South Africa

description: Model results. (XLSX 89Â kb)
DOI: 10.6084/m9.figshare.5955400
title: Additional file 7: of Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish

description: Excel file showing the statistics of the functional enrichment analysis using the DAVID tool. Number of genes counted for each term (count) P-values, list of genes counted (Genes), p adjust values (Benjamini) and % false discovery rate (FDR) are given in the tables. The figure shows enriched gene ontology terms (GOs) (biological function (BF), cellular compartment (CC) and molecular function (MF)) and KEGG pathways in segment 4 (seg4 vs seg1), segment 1 (seg1 vs 4) and segment 3 vs segment 2. It also shows the complete list of terms used for the Revigo analysis. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.5955400.v1
title: Additional file 7: of Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish

description: Excel file showing the statistics of the functional enrichment analysis using the DAVID tool. Number of genes counted for each term (count) P-values, list of genes counted (Genes), p adjust values (Benjamini) and % false discovery rate (FDR) are given in the tables. The figure shows enriched gene ontology terms (GOs) (biological function (BF), cellular compartment (CC) and molecular function (MF)) and KEGG pathways in segment 4 (seg4 vs seg1), segment 1 (seg1 vs 4) and segment 3 vs segment 2. It also shows the complete list of terms used for the Revigo analysis. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.5955388
title: Additional file 6: of Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish

description: The table shows the differentially expressed genes between the different segments. Segment 2 versus (vs) 1, 3 vs 1, 4 vs 1, 3 vs 4 and 3 vs 2. Gene IDs, gene symbol, P-values, P-adjust values and Log2 fold change are given in the table. Expression values are given in the sheet labeled “transcriptome” (XLSX 5003 kb)
DOI: 10.6084/m9.figshare.5955388.v1
title: Additional file 6: of Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish

description: The table shows the differentially expressed genes between the different segments. Segment 2 versus (vs) 1, 3 vs 1, 4 vs 1, 3 vs 4 and 3 vs 2. Gene IDs, gene symbol, P-values, P-adjust values and Log2 fold change are given in the table. Expression values are given in the sheet labeled “transcriptome” (XLSX 5003 kb)
DOI: 10.6084/m9.figshare.5955385
title: Additional file 9: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Amino acid sequence alignments used to construct Hidden Markov Models for homology searching. Alignment names correspond to HMM names in Additional file 6: Table S3. (AFA 5309 kb)
DOI: 10.6084/m9.figshare.5955385.v1
title: Additional file 9: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Amino acid sequence alignments used to construct Hidden Markov Models for homology searching. Alignment names correspond to HMM names in Additional file 6: Table S3. (AFA 5309 kb)
DOI: 10.6084/m9.figshare.5955364
title: Additional file 6: of Whole exome sequencing in three families segregating a pediatric case of sarcoidosis

description: All recessive variants identified in cases T1, T2 and T3. The de novo dominant variants have been fully described in the manuscript. The datasets of cases T1, T2 and T3 extracted from VCF (Variant call Format) and extracted in XLS file. (XLSX 368 kb)
DOI: 10.6084/m9.figshare.5955364.v1
title: Additional file 6: of Whole exome sequencing in three families segregating a pediatric case of sarcoidosis

description: All recessive variants identified in cases T1, T2 and T3. The de novo dominant variants have been fully described in the manuscript. The datasets of cases T1, T2 and T3 extracted from VCF (Variant call Format) and extracted in XLS file. (XLSX 368 kb)
DOI: 10.6084/m9.figshare.5955349
title: Additional file 5: of Whole exome sequencing in three families segregating a pediatric case of sarcoidosis

description: Table S4. Over-representation gene enrichment KEGG pathway analysis was performed on all the deleterious variant carrying genes. Data of the over-representation gene enrichment KEGG pathway analysis was performed on all the deleterious variant carrying genes in trios 1, 2 and 3. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5955349.v1
title: Additional file 5: of Whole exome sequencing in three families segregating a pediatric case of sarcoidosis

description: Table S4. Over-representation gene enrichment KEGG pathway analysis was performed on all the deleterious variant carrying genes. Data of the over-representation gene enrichment KEGG pathway analysis was performed on all the deleterious variant carrying genes in trios 1, 2 and 3. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5955343
title: MOESM1 of Proteomic characterization of high-density lipoprotein particles in patients with non-alcoholic fatty liver disease

description: Additional file 1. Proteome Abundance Data
DOI: 10.6084/m9.figshare.5955343.v1
title: MOESM1 of Proteomic characterization of high-density lipoprotein particles in patients with non-alcoholic fatty liver disease

description: Additional file 1. Proteome Abundance Data
DOI: 10.6084/m9.figshare.5955328
title: Additional file 6: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Table S3. All potential Golgi stacking protein sequences identified. Some databases, including for Homo sapiens and Rattus norvegicus, include several predicted sequences for a single locus; therefore, each sequence does not necessarily correspond to a separate gene. (CSV 526 kb)
DOI: 10.6084/m9.figshare.5955328.v1
title: Additional file 6: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Table S3. All potential Golgi stacking protein sequences identified. Some databases, including for Homo sapiens and Rattus norvegicus, include several predicted sequences for a single locus; therefore, each sequence does not necessarily correspond to a separate gene. (CSV 526 kb)
DOI: 10.6084/m9.figshare.5955262
title: Additional file 1: of A missense mutation in MYH1 is associated with susceptibility to immune-mediated myositis in Quarter Horses

description: Table S1. Across breed genotyping. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5955262.v1
title: Additional file 1: of A missense mutation in MYH1 is associated with susceptibility to immune-mediated myositis in Quarter Horses

description: Table S1. Across breed genotyping. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5955256
title: Additional file 3: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Table S2. Annotated M. balamuthi genes encoding Golgi proteins. Predicted protein amino acid sequences of identified genes, after manual adjustment and annotation of gene models, are listed. BLAST search results are also listed for searches into H. sapiens, S. cerevisiae, and D. discoideum protein databases (Additional file 8: Figure S5) using the annotated M. balamuthi sequences as queries. (CSV 93 kb)
DOI: 10.6084/m9.figshare.5955256.v1
title: Additional file 3: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Table S2. Annotated M. balamuthi genes encoding Golgi proteins. Predicted protein amino acid sequences of identified genes, after manual adjustment and annotation of gene models, are listed. BLAST search results are also listed for searches into H. sapiens, S. cerevisiae, and D. discoideum protein databases (Additional file 8: Figure S5) using the annotated M. balamuthi sequences as queries. (CSV 93 kb)
DOI: 10.6084/m9.figshare.5955253
title: Additional file 1: of An RNAi screen of Rho signalling networks identifies RhoH as a regulator of Rac1 in prostate cancer cell migration

description: Table S1. List of gene targets in siRNA library. Genes are divided into controls, Rho GTPases, other GTPases, RhoGEFs, RhoGAPs, effectors and others. Gene names and alternative gene names, Entrez Gene GeneIDs, RefSeq accession numbers, siRNA sequences and effects of each gene on migration and cell viability are shown as Z-scores. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.5955253.v1
title: Additional file 1: of An RNAi screen of Rho signalling networks identifies RhoH as a regulator of Rac1 in prostate cancer cell migration

description: Table S1. List of gene targets in siRNA library. Genes are divided into controls, Rho GTPases, other GTPases, RhoGEFs, RhoGAPs, effectors and others. Gene names and alternative gene names, Entrez Gene GeneIDs, RefSeq accession numbers, siRNA sequences and effects of each gene on migration and cell viability are shown as Z-scores. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.5955208
title: Additional file 5 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Value of the Betweenness Centrality topological index of all proteins present in the networks used in this study. (XLSX 290 kb)
DOI: 10.6084/m9.figshare.5955208.v1
title: Additional file 5 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Value of the Betweenness Centrality topological index of all proteins present in the networks used in this study. (XLSX 290 kb)
DOI: 10.6084/m9.figshare.5955205
title: Additional file 12: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Amino acid sequence alignments used for phylogenetics analyses of GRASP homologues (Additional file 7: Figure S4). The mask indicates the positions in the alignment that were included in the analysis. (AFA 22 kb)
DOI: 10.6084/m9.figshare.5955205.v1
title: Additional file 12: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Amino acid sequence alignments used for phylogenetics analyses of GRASP homologues (Additional file 7: Figure S4). The mask indicates the positions in the alignment that were included in the analysis. (AFA 22 kb)
DOI: 10.6084/m9.figshare.5955190
title: Additional file 4 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Value of the Bottleneck topological index of all proteins present in the networks used in this study. (XLSX 207 kb)
DOI: 10.6084/m9.figshare.5955190.v1
title: Additional file 4 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Value of the Bottleneck topological index of all proteins present in the networks used in this study. (XLSX 207 kb)
DOI: 10.6084/m9.figshare.5955184
title: Additional file 11: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Amino acid sequence alignment used for phylogenetic analysis of beta subunits of COPI and adaptin complexes (Additional file 4: Figure S2). The mask indicates the positions in the alignment that were included in the analysis. (AFA 40 kb)
DOI: 10.6084/m9.figshare.5955184.v1
title: Additional file 11: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Amino acid sequence alignment used for phylogenetic analysis of beta subunits of COPI and adaptin complexes (Additional file 4: Figure S2). The mask indicates the positions in the alignment that were included in the analysis. (AFA 40 kb)
DOI: 10.6084/m9.figshare.5955172
title: MOESM2 of Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection

description: Additional file 2: Table S1. List of all ubiquitinated protein sites identified in Toxoplasma-infected MEFs. Maxquant processed data taken from the modifiedpeptides.txt output table. Log2 normalised ratios for the indicated peptide sequences are displayed.
DOI: 10.6084/m9.figshare.5955172.v1
title: MOESM2 of Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection

description: Additional file 2: Table S1. List of all ubiquitinated protein sites identified in Toxoplasma-infected MEFs. Maxquant processed data taken from the modifiedpeptides.txt output table. Log2 normalised ratios for the indicated peptide sequences are displayed.
DOI: 10.6084/m9.figshare.5955166
title: Additional file 3 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Degree of connectivity of all proteins present in the networks used in this study. (XLSX 212 kb)
DOI: 10.6084/m9.figshare.5955166.v1
title: Additional file 3 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Degree of connectivity of all proteins present in the networks used in this study. (XLSX 212 kb)
DOI: 10.6084/m9.figshare.5955163
title: Additional file 10: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Table S4. Sources of genomic data used for this study. (CSV 23 kb)
DOI: 10.6084/m9.figshare.5955163.v1
title: Additional file 10: of A sophisticated, differentiated Golgi in the ancestor of eukaryotes

description: Table S4. Sources of genomic data used for this study. (CSV 23 kb)
DOI: 10.6084/m9.figshare.5955142
title: Additional file 2 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Protein interaction network of Leishmania infantum predicted using structural information through the Docking methodology. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.5955142.v1
title: Additional file 2 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Protein interaction network of Leishmania infantum predicted using structural information through the Docking methodology. (XLSX 187 kb)
DOI: 10.6084/m9.figshare.5955127
title: Additional file 1 of Building protein-protein interaction networks for Leishmania species through protein structural information

description: Protein interaction network of Leishmania braziliensis predicted using structural information through the Docking methodology. (XLSX 145 kb)
DOI: 10.5517/ccdc.csd.cc23474n
title: CCDC 1940480: Experimental Crystal Structure Determination

description: Related Article: N. Meundaeng, T.J. Prior, A. Rujiwatra|2019|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|75|1319|doi:10.1107/S2053229619011525
DOI: 10.5517/ccdc.csd.cc235shl
title: CCDC 1941979: Experimental Crystal Structure Determination

description: Related Article: Chun-Mei Yuan, Meng-Ting Yan, Fei Yuan, Xin-Yu Ling, Chun-Sheng Zhou, Jun Wang, Bao-Yue Cao, Ayushi Singh, Abhinav Kumar|2019|Inorg.Chem.Commun.|108|107543|doi:10.1016/j.inoche.2019.107543
DOI: 10.5517/ccdc.csd.cc236h50
title: CCDC 1942651: Experimental Crystal Structure Determination

description: Related Article: Atef Mayooufi, Moufida Romdhani-Younes, Johan Jacquemin, Jérôme Thibonnet|2019|Tetrahedron Lett.|60|151087|doi:10.1016/j.tetlet.2019.151087
DOI: 10.5517/ccdc.csd.cc236r7b
title: CCDC 1942901: Experimental Crystal Structure Determination

description: Related Article: Bruno Dominelli, Gerri M. Roberts, Christian Jandl, Pauline J. Fischer, Robert M. Reich, Alexander Pöthig, João D. G. Correia, Fritz E. Kühn|2019|Dalton Trans.|48|14036|doi:10.1039/C9DT03035B
DOI: 10.5517/ccdc.csd.cc236r8c
title: CCDC 1942902: Experimental Crystal Structure Determination

description: Related Article: Bruno Dominelli, Gerri M. Roberts, Christian Jandl, Pauline J. Fischer, Robert M. Reich, Alexander Pöthig, João D. G. Correia, Fritz E. Kühn|2019|Dalton Trans.|48|14036|doi:10.1039/C9DT03035B
DOI: 10.5517/ccdc.csd.cc23bhdc
title: CCDC 1946502: Experimental Crystal Structure Determination

description: Related Article: Xiangyuan Liu, Yanli Yin, Zhiyong Jiang|2019|Chem.Commun.|55|11527|doi:10.1039/C9CC06249A
DOI: 10.5517/ccdc.csd.cc23hq8m
title: CCDC 1951520: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and Daniel Rabinovich|2019|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc23hq9n
title: CCDC 1951521: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold and Daniel Rabinovich|2019|CSD Communication|||
DOI: 10.25318/2310025101-eng
title: Passenger bus and urban transit statistics, by the North American Industry Classification System (NAICS)

description: Canadian passenger bus and urban transit industries, total revenue and total passenger trips by the North American Industry Classification System (NAICS), selected provinces and regions, monthly.
DOI: 10.25318/2310025101-fra
title: Statistique du transport de passagers par autobus et le transport urbain, selon le Système de classification des industries de l'Amérique du Nord (SCIAN)

description: Industries canadiennes du transport de passagers par autobus et du transport urbain, recettes totales et voyages totaux selon le Système de classification des industries de l'Amérique du Nord (SCIAN), certaines provinces et régions, données mensuelles.
DOI: 10.25318/2310025201-eng
title: Itinerant movements, by weight group and type of power plant, airports without air traffic control towers, annual

description: Annual itinerant movements by aircraft weight group, broken down by maximum take-off weight categories ranging from under 2,000 kgs to over 136,000 kgs, and by type of power plant (jet, turbo-propellers, piston, helicopters and gliders) for airports without air traffic control towers.