cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6s82f20/1
title: Microsatellite genotype data of 15 populations of Vachelia tortilis in Kenya

description: The data was generated by genotyping 15 populations of Vachellia tortilis in Kenya using 10 microsatellite markers. 30 individual trees were randomly sampled per population, giving a total of 450 samples. Each locus is represented by two alleles called based on the allele size. Missing data is represented by zero (0)
DOI: 10.5061/dryad.7sg523n/1
title: Nowicki_Transect_Raw_Data_2-19-2019

description: Transect Data (over 27,000 animals over more than 14,000 km of transect surveys over 17 years)  used for all transect analyses and for creation of Figure 4.  File includes Standardized Data, a Column Key, and a Readme tab.
DOI: 10.5061/dryad.8p502cr/1
title: Data for The effects of male age, sperm age and mating history on ejaculate senescence

description: The first sheet provides data on body size measurements, the second sheet provides information on the labels for the body size measurements. The third sheet provides data on sperm traits used for the paper, the fourth sheet provides information on the labels for the sperm measurements.
DOI: 10.5061/dryad.94d37g3/2
title: 2014_2015_2016_Auke_qPCR-master

description: R code and data files to replicate the analyses in Levi, T., Allen, J.M., Bell, D., Joyce, J., Russell, J.R., Tallmon, D.A., Vulstek, S.C., Yang, C.Y., Yu, D.W. 2018. Environmental DNA for the enumeration and management of Pacific salmon. Molecular Ecology Resources. doi:10.1111/1755-0998.12987
DOI: 10.5061/dryad.b6063f5/1
title: Steffan-BeeOmnivory-IsotopicData-April-2019

description: These isotopic data were generated from field-collected bees. For each bee specimen, the delta 15N values for glutamic acid and phenylalanine have been provided.
DOI: 10.5061/dryad.bb46h5s/3
title: EFHC1-data_2019-02-04

description: The zip file contains all the data used to generate the figures in the associated manuscript. It is organized with folders containing different data types (from different kinds of experiments). It is further divided into folders containing data used to generate specific figures.
DOI: 10.5061/dryad.c797f04/1
title: Database IDs_Sex_Group size_Locations_Behaviour_Microsats

description: Data collected in the field (Coffin Bay, South Australia).The first spreadsheet contains all the information associated with the photo-Id database (including locations, group size, date, behaviour and communities assigned). The second spreadsheet contains the allele size for the loci used in this study and the respective IDs. All details are provided in the first row of each spreadsheet.
DOI: 10.5061/dryad.ct677k9/1
title: DataS1 for Novel bird responses to successive large-scale, landscape transformations.

description: Nanangroe bird surveys for 57 bird species and other associated data files.
DOI: 10.5061/dryad.gr50s42/1
title: Dressler et al_Data Sets

description: Data sets
DOI: 10.5061/dryad.jq46143/2
title: Model specification

description: R code to specify the 10 models in JAGS code and write them to external files
DOI: 10.5061/dryad.jq46143/3
title: Fit models to koala data and draw figures

description: R code to fit the JAGS models (specified in ‘Model specification.R’) to the data (in ‘hide_seek_scat.csv’) and produce Table 1, Figures 1-3, Supplementary Table 1 and Figure S1.
DOI: 10.5061/dryad.jq46143/4
title: Fit models to koala data subsets

description: R code to fit the JAGS models (specified in ‘Model specification.R’) to subsets of the data defined by the number of pellets dropped around each tree (1,2,4 or 8). A summary of the model outputs are written to a csv file.
DOI: 10.5061/dryad.jq46143/5
title: Analyse subset results

description: Produces Figure S2 from the csv file generated by ‘Fit models to koala data subsets.R’
DOI: 10.5061/dryad.jq46143/6
title: Simulate heterogeneity

description: Runs the data simulation and model fitting to generate the data used to produce Figures 4 and S3.
DOI: 10.5061/dryad.jq46143/7
title: Analyse heterogeneity simulation results

description: Summarises the results generated by ‘Simulate heterogeneity.R’ and draws Figures 4 and S3.
DOI: 10.5061/dryad.m66b10q.2
title: Data from: Climbing adaptations, locomotory disparity and ecological convergence in ancient stem ‘kangaroos’
DOI: 10.5061/dryad.m66b10q.2/1.2
title: Den Boer et al_SourceCode
DOI: 10.5061/dryad.m66b10q.2/2.2
title: Den Boer et al_Astragalus-Trochlear_Results
DOI: 10.5061/dryad.m66b10q.2/3.2
title: Den Boer et al_Astragalus-Medial_Results
DOI: 10.5061/dryad.m66b10q.2/4.2
title: Den Boer et al_Astragalus-Anterior_Results
DOI: 10.5061/dryad.m66b10q.2/5.2
title: Den Boer et al_Astragalus-Plantar_Results
DOI: 10.5061/dryad.m66b10q.2/6.2
title: Den Boer et al_Astragalus-Lateral_Results
DOI: 10.5061/dryad.m66b10q.2/7.2
title: Den Boer et al_Astragalus-Posterior_Results
DOI: 10.5061/dryad.m66b10q.2/8.2
title: Den Boer et al_Astragalus-LinearMeasurements
DOI: 10.5061/dryad.n88kb1m/14
title: SNP association analysis males genes
DOI: 10.5061/dryad.n88kb1m/15
title: SNP association analysis female genes
DOI: 10.5061/dryad.n88kb1m/16
title: control_genes_snp_genotypes

description: These data are for the control genes. Each SNP is listed without any identifying information and only variable sites are provided. A code relating each SNP number to the particular gene is contained in the fasta zip file with full alignments for each locus.
DOI: 10.5061/dryad.n88kb1m/17
title: Control and Candidate gene fasta files

description: Each fasta file contains the full CDS aligned for each genotype. Heterozygous sites are marked with ambiguity characters or "-". The two text files relate the SNP numbers used in the analysis with the FBgn numbers for each locus
DOI: 10.5061/dryad.p0q053s/1
title: DATA_Navedo_et_al_PLoS_ONE_rev
DOI: 10.5061/dryad.q41m844.1/1.1
title: Fecundity and vital rate data
DOI: 10.5061/dryad.qk653b3/1
title: Representative MD structures and setup files

description: The data package contains: 1. PDB files with representative structures of top clusters, with clustering performed using RMSD as a similarity measure between the structures in simulated trajectories. 2. Topologies, input structures and files containing additional parameters and settings used in the simulations for each simulated system. 3. Sample inputs for a single MD run. Detailed description of the contents of the data package can be found in the README file.
DOI: 10.5061/dryad.rt552kr/1
title: R code of the model
DOI: 10.5061/dryad.sn1s14h/1
title: Supporting Information (Guilherme Pereira et al. 2019), Journal of Ecology

description: This file contains the individual replicate data reported in Guilherme Pereira et al. (2019). Details on site location, sampling procedures and species are provided in the paper.
The data is provided to others to freely use in their own analyses - we ask that users to cite Guilherme Pereira et al. (2019) in any output that may emerge.
DOI: 10.5061/dryad.tq1dk2m/1
title: Supplementary Tables

description: Supplementary Tables as referenced in the manuscript.
DOI: 10.5061/dryad.vb653hv/1
title: Black brant Behavioral Data

description: Data was collected on the Yukon Kuskokwim Delta, Alaska, USA from 1987-2015. Observers stayed in towers with observation blinds and opportunistically selected broods to record behaviors for every minute in an hour. Some observations were shorter or longer than 60 minutes. Data was produced using program R from data collected in the field to calculate the proportion of time an individual spent on a behavior in an observation bout. Column Headers: YEAR is the year data was collected; DATE is the Julian date of the observation in the year data was collected; BAND is the leg band ID of the individual being observed; MBAND is the leg band ID of the brood's observed male; FBAND is the leg band ID of the brood's observed female; NUMGOS is the number of goslings observed; ZERO is the proportion of foraging behavior observed; ONE is the proportion of preening behavior observed; TWO is the proportion of alert while standing behavior observed; FOUR is the proportion of bathing behavior observed; FIVE is the proportion of alert while sitting behavior observed; SEVEN is the proportion of running behavior observed; P is the proportion of  walking behavior observed; L is the proportion of aggressive behavior observed; O is the proportion of swimming behavior observed; I is the proportion of resting behavior observed; U is the proportion of unknown behavior observed, often when one member of the brood was out of view; SEX is the sex of the observed individual
DOI: 10.5061/dryad.vb653hv/2
title: Black brant Growth Data

description: Data was collected on the Yukon Kuskokwim Delta, Alaska, USA from 1987-2014. Goslings were web-tagged at hatch, so age in days was able to be calculated at recapture. Goslings were recaptured and weighed at approximately 30 after hatching. Column Headers: MASS is individual gosling's mass in grams at capture at approximately 30 days; AGE is individual gosling's age at recapture; YEAR is the year an individual gosling's mass was recorded; TAGDAY is the Julien date of an individual gosling's web-tagging.
DOI: 10.5061/dryad.vb653hv/3
title: Carex subspathacea Lawn Data

description: Data was collected on the Yukon Kuskokwim Delta, Alaska, USA from 1991-2016. Data was collected with aerial photography and videography along transects. Photos captured approximately 69m squared of ground space and were spaced at least 200m from one another. 10x10 (1991-1999) or 12x15 (1993-2016) overlaid photographs and the number of points on the grid primarily occupied by various habitat types was recorded. In program R, data was cleaned to identify the number of points per grid occupied by Carex subspathacea grazing lawns. Column Headers: SIZE is the number of points overlaid as a grid on a photo; SUB is the number of points in a grid occupied primarily by Carex subspathacea; YEAR is the year the sample was taken.
DOI: 10.17632/v2zbb235mp.1
title: Data for: Multi-criteria evolutionary algorithm optimization for horticulture crop management

description: Genetic algorithm approaches to land use.
DOI: 10.17632/ycvvmdk6sn.1
title: An Integrated Approach for cultivation of high valued medicinal herbs in Indian Perspective

description: To remain competitive and survive in the developing economy, farmer has to adopt the scientific and technological approach for farming. Integrated farming with crop diversification is a sustainable agricultural development concept towards accumulation and utilization of cultivable land. Cultivating suitable multiple crop like short term vegetable, long term tree plantation, herbal farming are in order to generate higher farm income. Increasing awareness about physical, mental wellness and inimical effects of modern medicines peoples again diversify for the use of herbal medicines. Our exercise demonstrates the integrated path for cultivation of Chlorophytum Borivilianum (Safed Musali) with other high valued medicinal herbs like Momordica Charantia L. (Bitter gourd), Mucuna Pruriens L. (Velvet Beans), and Jatropha Curcas in the cultivated land of Gwalior in India. It has been noticed that all the four herbs are eco-friendly with each other and can cultivate on the same land. Another herb Gloriosa Superba Linn (Superb Lily) is proposed for empirical purpose on the same cultivation field with Jatropha curcas. The primary objective of our study is to optimize the economy of the farm land and yield of interdependent plants. Our accomplishment and practice will help in terms of understanding integrated goal for multicropping of herbs to the economy of farmer. This study will provide the ground and contribute in future for the study of integrated herbal farming.
DOI: 10.5061/dryad.0582b8b/1
title: Population trends data

description: Data on home range size, habitat selection and factors affecting spatial distribution of zebra, tsessebe and blue wildebeest in the Okavango Delta
DOI: 10.5061/dryad.0f257gq/1
title: Invertebrate and physicochemical data

description: This file contains invertebrate and physicochemical data used in analyses.
DOI: 10.5061/dryad.0f257gq/2
title: Chemistry results

description: Chemistry results for the first and second pulses.
DOI: 10.5061/dryad.0f257gq/3
title: MalathionBreakdown2

description: Assay results from the malathion breakdown experiment.
DOI: 10.5061/dryad.0f257gq/4
title: Indices and metrics

description: Indices and metrics from the conclusion of first and second treatment pulses.
DOI: 10.5061/dryad.0f257gq/5
title: MultipleStressBioassay

description: Results from the laboratory assay conducted examining whether antagonism observed in the mesocosms, and breakdown assay could result in effects within particular specimens in the lab.
DOI: 10.5061/dryad.0tr36fp/1
title: C. maculatus reference genome

description: This compressed fastq file contains our de novo C. maculatus genome assembly. This was produced with ALLPATHS-LG.
DOI: 10.5061/dryad.0tr36fp/2
title: WFABC-dyn source code

description: This compressed directory contains the C++ source code for the ABC simulations for the L14 line. This program simulates evolution by drift and selection based on a known ancestral allele frequency. This code requires the Gnu Scientific Library.
DOI: 10.5061/dryad.0tr36fp/3
title: WFABC-const source code

description: This compressed directory contains the C++ source code for the ABC simulations for the L1, L2 and L3 lines. This programs first simulates evolution in genetic drift backwards in time to obtain ancestral allele frequencies for the forward in time simulations of evolution by drift and selection in the lentil lines. This code requires the Gnu Scientific Library.
DOI: 10.5061/dryad.0tr36fp/4
title: WFABC-simple

description: This compressed directory contains the C++ source code for the ABC simulations for the L11 line. This program assumes a known ancestral allele frequency and only outputs the final allele frequency after four generations of evolution by drift and selection. This code requires the Gnu Scientific Library.
DOI: 10.5061/dryad.17h7q4v/1
title: Data for Meany et al. 2019
DOI: 10.5061/dryad.285s287/1
title: Genotypes

description: Comma-separated file containing MHC genotype data (two-column format) for individuals included in the study.  Missing data indicated with blanks.
DOI: 10.5061/dryad.285s287/2
title: Individual reproductive success

description: Data for analysis of individual male and female reproductive success in captivity.
DOI: 10.5061/dryad.285s287/3
title: Pairwise reproductive success

description: Data for analysis of pairwise reproductive success in a competitive captive setting.
DOI: 10.5061/dryad.285s287/4
title: Captive vs wild females

description: Data for comparison of reproductive success of captive versus wild females.
DOI: 10.5061/dryad.2kf78h8/1
title: dietary and microhabitat data, used and available

description: Diet data, 1:  stable isotope analysis of lizard fecal samples and primary producers at high and low elevation sites.  Diet data, 2: used prey items (from stomach samples) and available prey items (from pitfall traps) at high and low elevation sites.  Microhabitat data: ground cover types and shade cover amounts at sites used by lizards, and paired unused but available sites (random sites), at high and low elevation.
DOI: 10.5061/dryad.3fh816m/1
title: Morphological measurements of Oedemera sexualis, in  Japan

description: Oedemera sexualis (Coleoptera: Oedemeridae) is endemic to the Japanese Archipelago and distributed from the southern end of the Ryukyu Islands to the western part of Honshu mainland. Individuals were collected from 22 localities in Japan from 2002 to 2016.
DOI: 10.5061/dryad.3v3r2h8/1
title: wing coordinates (15 landmarks)

description: Raw landmark coordinates describing wing morphology in two species of sepsid flies (Sepsis punctum and Sepsis fulgens). Several iso-female lines per population were reared under a common garden regime with different temperature treatments (=rearing temperature).  
These landmark data are untransformed and are in unit pixel. The “resolution” column can be used to transform distances in unit pixel to distances in unit millimetre [mm].
See the original publication for further information on population sampling, laboratory rearing, digitization and analytic procedures. Additional, more detailed information on analysis and data collection available upon request.
DOI: 10.5061/dryad.44mn451/1
title: Read files for all experiments

description: Read files for all experiments and all markers targeted
DOI: 10.5061/dryad.44mn451/2
title: Table with all specimens used in our experiments and their according IDs, taxonomy and collections sites

description: Table with all specimens used in our experiments and their according IDs, taxonomy and collections sites
DOI: 10.5061/dryad.44mn451/3
title: OTU table for all markers and specimens

description: OTU tables for all markers and specimens
DOI: 10.5061/dryad.44mn451/4
title: Table with all taxa, which were used to test the efficiency of our newly designed primers

description: Table with all taxa, which were used to test the efficiency of our newly designed primers
DOI: 10.5061/dryad.44mn451/5
title: Alignments of reference sequences used for primer design and primers

description: Alignments of reference sequences used for primer design and primers
DOI: 10.5061/dryad.45j0r70/13
title: M3_IgM_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV MGRM8 SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/14
title: M3_IgM_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV MGRM8 SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/15
title: M3_LLC_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV MGRM8 SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/16
title: M3_LLC_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by three rounds of selection using HIV MGRM8 SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/17
title: W1_IgM_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/18
title: W1_IgM_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/19
title: W1_LLC_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV WITO SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.45j0r70/20
title: W1_LLC_R2.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by one round of selection using HIV WITO SOSIP. Immunoglobulin lambda light chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 2 (R2)
DOI: 10.5061/dryad.45j0r70/21
title: W2_IgM_R1.fastq

description: V781-PG9 engineered Ramos cells after HIV C108 SOSIP enrichment followed by two rounds of selection using HIV WITO SOSIP. Immunoglobulin heavy chain variable sequences from RT-PCR and amplification of cell mRNA performed using gene specific primers. TruSeq LT amplicon sequenced using 300x300 paired end reads on the Illumina MiSeq. This is read 1 (R1)
DOI: 10.5061/dryad.5r6t1mh/1
title: Data For On the Architecture of Mate Choice Decisions_Dryad

description: The data file includes female mating responses for preference function shape; preference function traits of peak, tolerance, responsiveness, and strength; choosieness; principle component data of female preferences; as well as physical characteristics of tested individuals.
DOI: 10.5061/dryad.76082.1
title: Data from: Determinants of early survival in marine animal genera
DOI: 10.5061/dryad.7kk71d0/1
title: Cheetah marking post locations

description: The locations of cheetah marking posts that were found based on a cluster analysis using data from the GPS collars and opportunistically when conducting fieldwork.
DOI: 10.5061/dryad.7kk71d0/2
title: Cheetah location data

description: GPS locations for each cheetah within each dyad i.e. pair of cheetahs.
DOI: 10.5061/dryad.8c4092n/1
title: Vagi et al_S3 Supplementary data

description: data file
DOI: 10.5061/dryad.8c4092n/2
title: Vagi et al_S2 Supplementary data

description: references for data
DOI: 10.5061/dryad.8c4092n/3
title: composite tree

description: composite phylogenetic tree (alternative tree in analyses)
DOI: 10.5061/dryad.9020.1
title: Data from: TEST SUBMISSION FOR DOI ASSIGNMENT
DOI: 10.5061/dryad.bd08ft6.2
title: Data from: Speed-mediated properties of schooling
DOI: 10.5061/dryad.bd08ft6.2/1.2
title: deviation_bytrial.csv

description: dataset used to calculate effect of speed on alignment
DOI: 10.5061/dryad.bd08ft6.2/2.2
title: propfront_bytrial

description: dataset used to calculate effect of speed on proportion of group in front or behind focal individual
DOI: 10.5061/dryad.bd08ft6.2/3.2
title: Kent et al_Rcode

description: R code used for statistical analysis
DOI: 10.5061/dryad.bd08ft6.2/4.2
title: TE_trialavg

description: datasets used to calculate effect of speed and alignment on transfer entropy
DOI: 10.5061/dryad.bd08ft6.2/6.2
title: BR Trial Excerpt
DOI: 10.5061/dryad.dr1c383/2
title: PLoS ONE Main Raw Datafile (Excel format)

description: The data file contains raw data and the code book.
DOI: 10.5061/dryad.fd4d84h/1
title: Habitat choice data

description: Raw data for microhabitat choice
DOI: 10.5061/dryad.gg4pk7d/1
title: Replication files for Meng and Rode, Nature Climate Change, 2019

description: This zipped folder contains code and data for replicating results in Meng and Rode, "The Social Cost of Lobbying over Climate Policy", Nature Climate Change, 2019.
DOI: 10.5061/dryad.gh41n3j/1
title: CP_Data
DOI: 10.5061/dryad.gh41n3j/2
title: SS_data
DOI: 10.5061/dryad.gh41n3j/3
title: Selside Vegetation Survey Gas Rings
DOI: 10.5061/dryad.gh41n3j/4
title: Selside Vegetation Survey Whole Plots
DOI: 10.5061/dryad.gr50s42/2
title: Dressler et al_Modeling Code

description: Modeling code