cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14060115.v1
title: Additional file 2 of Amplicon-based skin microbiome profiles collected by tape stripping with different adhesive film dressings: a comparative study

description: Additional file 2: Table S1. Amplicon sequence variant (ASV)-level comparison between three different adhesives. ASVs that shared more than 0.1% on average are listed.
DOI: 10.6084/m9.figshare.14060136.v1
title: Additional file 1 of Development of a behaviour change workplace-based intervention to improve nurses’ eating and physical activity

description: Additional file 1. Template for intervention description and replication (TIDieR) checklist.
DOI: 10.6084/m9.figshare.14060136
title: Additional file 1 of Development of a behaviour change workplace-based intervention to improve nurses’ eating and physical activity

description: Additional file 1. Template for intervention description and replication (TIDieR) checklist.
DOI: 10.25403/upresearchdata.14052227
title: The value relevance of goodwill and its disclosure for companies listed on the JSE

description: JSE listed companies 2005 - 2017 with a goodwill balance. The disclosure quality of all firm-year observations with goodwill impairment.
DOI: 10.6084/m9.figshare.12651074.v5
title: Extended Data for A rooted phylogeny resolves early bacterial evolution

description: Extended Data for A rooted phylogeny resolves early bacterial evolution
DOI: 10.25403/upresearchdata.14052227.v1
title: The value relevance of goodwill and its disclosure for companies listed on the JSE

description: JSE listed companies 2005 - 2017 with a goodwill balance. The disclosure quality of all firm-year observations with goodwill impairment.
DOI: 10.6084/m9.figshare.14060414
title: Extended data for ‘The effects of lactic acid bacteria and yeasts as probiotics on the growth performance, relative organ weight, blood parameters, and immune responses of broiler: A meta-analysis’

description: The effects of lactic acid bacteria and yeasts as probiotics on the growth performance, relative organ weight, blood parameters, and immune responses of broiler: A meta-analysis
DOI: 10.6084/m9.figshare.14054063
title: Supplementary Material for: Prelims

description: Medicine
DOI: 10.6084/m9.figshare.14054063.v1
title: Supplementary Material for: Prelims

description: Medicine
DOI: 10.6084/m9.figshare.14060501
title: PRISMA checklist for ‘‘The effects of lactic acid bacteria and yeasts as probiotics on the growth performance, relative organ weight, blood parameters, and immune responses of broiler: A meta-analysis

description: PRISMA checklist for ‘‘The effects of lactic acid bacteria and yeasts as probiotics on the growth performance, relative organ weight, blood parameters, and immune responses of broiler: A meta-analysis.
DOI: 10.6084/m9.figshare.14060516
title: Lung toxicity and gene expression changes in response to whole-body inhalation exposure to cellulose nanocrystal in rats

description: Human exposure to cellulose nanocrystal (CNC) is possible during the production and/or use of products containing CNC. The objectives of the current study were to determine the lung toxicity of CNC and the underlying molecular mechanisms of the toxicity. Rats were exposed to air or CNC (20 mg/m<sup>3</sup>, six hours/day, 14 d) by whole-body inhalation and lung toxicity and global gene expression profile were determined. Significant increases in lactate dehydrogenase activity, pro-inflammatory cytokine levels, phagocyte oxidant production, and macrophage and neutrophil counts were detected in the bronchoalveolar lavage cells or fluid from the CNC exposed rats. Mild lung histological changes, such as the accumulation of macrophages and neutrophils, were detected in the CNC exposed rats. Gene expression profiling by next generation sequencing identified 531 genes whose expressions were significantly different in the lungs of the CNC exposed rats, compared with the controls. Bioinformatic analysis of the lung gene expression data identified significant enrichment in several biological functions and canonical pathways including those related to inflammation (cellular movement, immune cell trafficking, inflammatory diseases and response, respiratory disease, complement system, acute phase response, leukocyte extravasation signaling, granulocyte and agranulocyte adhesion and diapedesis, IL-10 signaling, and phagosome formation and maturation) and oxidative stress (NRF2-mediated oxidative stress response, production of nitric oxide and reactive oxygen species in macrophages, and free radical scavenging). Our data demonstrated that inhalation exposure of rats to CNC resulted in lung toxicity mediated mainly through the induction of inflammation and oxidative stress.
DOI: 10.25919/hzk0-7z97
title: Parkes observations for project P1061 semester 2020OCTS_13

description: Fast Radio Bursts (FRBs) have extremely high brightness temperature, owing to their short-duration and prominent flux from the distant universe. The studies on emission mechanism of FRBs have met bottleneck for a long time unless a complete spectrum is measured. We propose to observe a new repeating FRB source, FRB 180301, using the Parkes ultra-wide-bandwidth receiver (UWL). This source was initially found by Parkes multibeam receivers and confirmed repetition by the FAST telescope. The source is still active until Jun 2020 from FAST follow-ups. It’s an ideal opportunity to capture comprehensive spectral information using the Parkes UWL. We demonstrate that the beam coverage is feasible and 30-hr observations are required for at least one detection.
DOI: 10.48370/ofd/wsvinr
title: Barszcz Mantegazziego (Heracleum mantegazzianum Sommier Levier), 7410

description: Herbarium
DOI: 10.48370/ofd/wsvinr/rgxnsb
title: HMW_Heracleum_mantegazzianum_Sommier_&_Levier_H_7410.jpg

description: :unav
DOI: 10.20351/29my20180522
title: CALECO Cruise, RV Mytilus

description: CALECO Cruise (29MY20180522) carried out on the Research Vessel Mytilus in 2018
DOI: 10.6084/m9.figshare.14060516.v1
title: Lung toxicity and gene expression changes in response to whole-body inhalation exposure to cellulose nanocrystal in rats

description: Human exposure to cellulose nanocrystal (CNC) is possible during the production and/or use of products containing CNC. The objectives of the current study were to determine the lung toxicity of CNC and the underlying molecular mechanisms of the toxicity. Rats were exposed to air or CNC (20 mg/m<sup>3</sup>, six hours/day, 14 d) by whole-body inhalation and lung toxicity and global gene expression profile were determined. Significant increases in lactate dehydrogenase activity, pro-inflammatory cytokine levels, phagocyte oxidant production, and macrophage and neutrophil counts were detected in the bronchoalveolar lavage cells or fluid from the CNC exposed rats. Mild lung histological changes, such as the accumulation of macrophages and neutrophils, were detected in the CNC exposed rats. Gene expression profiling by next generation sequencing identified 531 genes whose expressions were significantly different in the lungs of the CNC exposed rats, compared with the controls. Bioinformatic analysis of the lung gene expression data identified significant enrichment in several biological functions and canonical pathways including those related to inflammation (cellular movement, immune cell trafficking, inflammatory diseases and response, respiratory disease, complement system, acute phase response, leukocyte extravasation signaling, granulocyte and agranulocyte adhesion and diapedesis, IL-10 signaling, and phagosome formation and maturation) and oxidative stress (NRF2-mediated oxidative stress response, production of nitric oxide and reactive oxygen species in macrophages, and free radical scavenging). Our data demonstrated that inhalation exposure of rats to CNC resulted in lung toxicity mediated mainly through the induction of inflammation and oxidative stress.
DOI: 10.20351/29gd20000622
title: NERIT-II Cruise, RV García del Cid

description: NERIT-II Cruise (29GD20000622) carried out on the Research Vessel García del Cid in 2000
DOI: 10.20351/29gd20000913
title: CRAC Cruise, RV García del Cid

description: CRAC Cruise (29GD20000913) carried out on the Research Vessel García del Cid in 2000
DOI: 10.20351/29gd20000311
title: MESOPELAGIC Cruise, RV García del Cid

description: MESOPELAGIC Cruise (29GD20000311) carried out on the Research Vessel García del Cid in 2000
DOI: 10.20351/29gd20000502
title: SARDINA Cruise, RV García del Cid

description: SARDINA Cruise (29GD20000502) carried out on the Research Vessel García del Cid in 2000
DOI: 10.48370/ofd/lwvrxj
title: Barszcz syberyjski (Heracleum sibiricum L.), 5142

description: Herbarium
DOI: 10.48370/ofd/lwvrxj/tbmklm
title: HMW_Heracleum_sibiricum_H_5142.jpg

description: :unav
DOI: 10.48370/ofd/7pros6
title: Barszcz syberyjski (Heracleum sibiricum L.), 633

description: Herbarium
DOI: 10.48370/ofd/7pros6/r80bpr
title: HMW_Heracleum_sibiricum_H_0633.jpg

description: :unav
DOI: 10.48370/ofd/rhcmiq
title: Barszcz syberyjski (Heracleum sibiricum L.), 5980

description: Herbarium
DOI: 10.48370/ofd/rhcmiq/rjk0ws
title: HMW_Heracleum_sibiricum_H_5980.jpg

description: :unav
DOI: 10.20351/29gd20000530
title: ARO Cruise, RV García del Cid

description: ARO Cruise (29GD20000530) carried out on the Research Vessel García del Cid in 2000
DOI: 10.18112/openneuro.ds003521.v1.0.0
title: FridayNightLights_Study2
DOI: 10.20351/29gd20000222
title: PRACTICAS-00 Cruise, RV García del Cid

description: PRACTICAS-00 Cruise (29GD20000222) carried out on the Research Vessel García del Cid in 2000
DOI: 10.6084/m9.figshare.12651074.v6
title: Extended Data for A rooted phylogeny resolves early bacterial evolution

description: Extended Data for A rooted phylogeny resolves early bacterial evolution
DOI: 10.6084/m9.figshare.14060534
title: Supplementary Material for: Reduced Jumping to Conclusion Bias after Experimentally Induced Enhancement of Subjective Body Boundaries in Psychosis

description: <b><i>Introduction:</i></b> A disturbed sense of self is frequently discussed as an etiological factor for delusion symptoms in psychosis. Phenomenological approaches to psychopathology posit that lacking the sense that the self is localized within one’s bodily boundaries (disembodiment) is one of the core features of the disturbed self in psychosis. The present study examines this idea by experimentally manipulating the sense of bodily boundaries. <b><i>Methods:</i></b> Seventy-three patients with psychosis were randomly assigned to either a 10-min, guided self-massage in the experimental group (EG) to enhance the sense of bodily boundaries or a control group (CG), which massaged a fabric ring. Effects on an implicit measure (jumping to conclusion bias; JTC) and an explicit measure (Brief State Paranoia Checklist; BSPC) of delusion processes were assessed. The JTC measures the tendency to make a decision with little evidence available, and the BSPC explicitly measures the approval of paranoid beliefs. <b><i>Results:</i></b> Patients in the EG showed a lower JTC (<i>M</i> = 4.11 draws before decision) than the CG (<i>M</i> = 2.43; Cohen’s <i>d</i> = 0.64). No significant difference in the BSPC was observed. <b><i>Discussion/Conclusion:</i></b> Our results indicate that enhancing the sense of body boundaries through a self-massage can reduce an implicit bias associated with delusional ideation and correspondingly support the idea that disembodiment might be a relevant factor in the formation of psychotic symptoms.
DOI: 10.6084/m9.figshare.14060534.v1
title: Supplementary Material for: Reduced Jumping to Conclusion Bias after Experimentally Induced Enhancement of Subjective Body Boundaries in Psychosis

description: <b><i>Introduction:</i></b> A disturbed sense of self is frequently discussed as an etiological factor for delusion symptoms in psychosis. Phenomenological approaches to psychopathology posit that lacking the sense that the self is localized within one’s bodily boundaries (disembodiment) is one of the core features of the disturbed self in psychosis. The present study examines this idea by experimentally manipulating the sense of bodily boundaries. <b><i>Methods:</i></b> Seventy-three patients with psychosis were randomly assigned to either a 10-min, guided self-massage in the experimental group (EG) to enhance the sense of bodily boundaries or a control group (CG), which massaged a fabric ring. Effects on an implicit measure (jumping to conclusion bias; JTC) and an explicit measure (Brief State Paranoia Checklist; BSPC) of delusion processes were assessed. The JTC measures the tendency to make a decision with little evidence available, and the BSPC explicitly measures the approval of paranoid beliefs. <b><i>Results:</i></b> Patients in the EG showed a lower JTC (<i>M</i> = 4.11 draws before decision) than the CG (<i>M</i> = 2.43; Cohen’s <i>d</i> = 0.64). No significant difference in the BSPC was observed. <b><i>Discussion/Conclusion:</i></b> Our results indicate that enhancing the sense of body boundaries through a self-massage can reduce an implicit bias associated with delusional ideation and correspondingly support the idea that disembodiment might be a relevant factor in the formation of psychotic symptoms.
DOI: 10.48370/ofd/83ebqx
title: Barszcz zwyczajny (Heracleum sphondylium L. s. str.), 5467

description: Herbarium
DOI: 10.48370/ofd/83ebqx/arz4xf
title: HMW_Heracleum_sphondylium_L_s_str_H_5467.jpg

description: :unav
DOI: 10.48370/ofd/dd8f0b
title: Barszcz zwyczajny (Heracleum sphondylium L. s. str.), 3121

description: Herbarium
DOI: 10.48370/ofd/dd8f0b/nhhi8j
title: HMW_Heracleum_sphondylium_L_s_str_H_3121.jpg

description: :unav
DOI: 10.48370/ofd/domkcp
title: Barszcz zwyczajny (Heracleum sphondylium L. s. str.), 7382

description: Herbarium
DOI: 10.48370/ofd/domkcp/kvtrun
title: HMW_Heracleum_sphondylium_L_s_str_H_7382.jpg

description: :unav
DOI: 10.48370/ofd/fb1aqu
title: Barszcz zwyczajny (Heracleum sphondylium L. s. str.), 1399

description: Herbarium
DOI: 10.48370/ofd/fb1aqu/pghcjz
title: HMW_Heracleum_sphondylium_L_s_str_H_1399.jpg

description: :unav
DOI: 10.20351/29gd20010710
title: CAÑONES-III Cruise, RV García del Cid

description: CAÑONES-III Cruise (29GD20010710) carried out on the Research Vessel García del Cid in 2001
DOI: 10.6084/m9.figshare.12782276
title: DistODD_Meterial

description: DistODD: Self-Adaptive Dynamic Dependency Analysis for Distributed Systems-----------<br>This is the artifact package of DistODD. Full details on this package and operation steps are documented in README.txt<br>
DOI: 10.6084/m9.figshare.14060579
title: Unravelling the role of waveguide-plasmon strong coupling, avoided crossing and natural weak value amplification on the enhanced Faraday effect in hybrid magneto-plasmonic systems

description: The following data sets are used for generating the results of the above mentioned manuscript.
DOI: 10.6084/m9.figshare.14060582
title: Supplementary Material for: Proteogenomic Insights into the Physiology of Marine, Sulfate-Reducing, Filamentous <b><i>Desulfonema limicola</i></b> and <b><i>Desulfonema magnum</i></b>

description: The genus <i>Desulfonema</i> belongs to the deltaproteobacterial family <i>Desulfobacteraceae</i> and comprises marine, sulfate-reducing bacteria that form filaments and move by gliding. This study reports on the complete, manually annotated genomes of <i>Dn. limicola</i> 5ac10<sup>T</sup> (6.91 Mbp; 6,207 CDS) and <i>Dn. magnum</i> 4be13<sup>T</sup> (8.03 Mbp; 9,970 CDS), integrated with substrate-specific proteome profiles (8 vs. 11). The richness in mobile genetic elements is shared with other <i>Desulfobacteraceae</i> members, corroborating horizontal gene transfer as major driver in shaping the genomes of this family. The catabolic networks of <i>Dn. limicola</i> and <i>Dn. magnum</i> have the following general characteristics: 98 <i>versus</i> 145 genes assigned (having genomic shares of 1.7 vs. 2.2%), 92.5 <i>versus</i> 89.7% proteomic coverage, and scattered gene clusters for substrate degradation and energy metabolism. The <i>Dn. magnum</i> typifying capacity for aromatic compound degradation (e.g., <i>p</i>-cresol, 3-phenylpropionate) requires 48 genes organized in operon-like structures (87.7% proteomic coverage; no homologs in <i>Dn. limicola</i>). The protein complements for aliphatic compound degradation, central pathways, and energy metabolism are highly similar between both genomes and were identified to a large extent (69–96%). The differential protein profiles revealed a high degree of substrate-specificity for peripheral reaction sequences (forming central intermediates), agreeing with the high number of sensory/regulatory proteins predicted for both strains. By contrast, central pathways and modules of the energy metabolism were constitutively formed under the tested substrate conditions. In accord with their natural habitats that are subject to fluctuating changes of physicochemical parameters, both <i>Desulfonema</i> strains are well equipped to cope with various stress conditions. Next to superoxide dismutase and catalase also desulfoferredoxin and rubredoxin oxidoreductase are formed to counter exposure to molecular oxygen. A variety of proteases and chaperones were detected that function in maintaining cellular homeostasis upon heat or cold shock. Furthermore, glycine betaine/proline betaine transport systems can respond to hyperosmotic stress. Gliding movement probably relies on twitching motility via type-IV pili or adventurous motility. Taken together, this proteogenomic study demonstrates the adaptability of <i>Dn. limicola</i> and <i>Dn. magnum</i> to its dynamic habitats by means of flexible catabolism and extensive stress response capacities.
DOI: 10.6084/m9.figshare.12782276.v1
title: DistODD_Meterial

description: DistODD: Self-Adaptive Dynamic Dependency Analysis for Distributed Systems-----------<br>This is the artifact package of DistODD. Full details on this package and operation steps are documented in README.txt<br>
DOI: 10.6084/m9.figshare.14060579.v1
title: Unravelling the role of waveguide-plasmon strong coupling, avoided crossing and natural weak value amplification on the enhanced Faraday effect in hybrid magneto-plasmonic systems

description: The following data sets are used for generating the results of the above mentioned manuscript.
DOI: 10.6084/m9.figshare.14060582.v1
title: Supplementary Material for: Proteogenomic Insights into the Physiology of Marine, Sulfate-Reducing, Filamentous <b><i>Desulfonema limicola</i></b> and <b><i>Desulfonema magnum</i></b>

description: The genus <i>Desulfonema</i> belongs to the deltaproteobacterial family <i>Desulfobacteraceae</i> and comprises marine, sulfate-reducing bacteria that form filaments and move by gliding. This study reports on the complete, manually annotated genomes of <i>Dn. limicola</i> 5ac10<sup>T</sup> (6.91 Mbp; 6,207 CDS) and <i>Dn. magnum</i> 4be13<sup>T</sup> (8.03 Mbp; 9,970 CDS), integrated with substrate-specific proteome profiles (8 vs. 11). The richness in mobile genetic elements is shared with other <i>Desulfobacteraceae</i> members, corroborating horizontal gene transfer as major driver in shaping the genomes of this family. The catabolic networks of <i>Dn. limicola</i> and <i>Dn. magnum</i> have the following general characteristics: 98 <i>versus</i> 145 genes assigned (having genomic shares of 1.7 vs. 2.2%), 92.5 <i>versus</i> 89.7% proteomic coverage, and scattered gene clusters for substrate degradation and energy metabolism. The <i>Dn. magnum</i> typifying capacity for aromatic compound degradation (e.g., <i>p</i>-cresol, 3-phenylpropionate) requires 48 genes organized in operon-like structures (87.7% proteomic coverage; no homologs in <i>Dn. limicola</i>). The protein complements for aliphatic compound degradation, central pathways, and energy metabolism are highly similar between both genomes and were identified to a large extent (69–96%). The differential protein profiles revealed a high degree of substrate-specificity for peripheral reaction sequences (forming central intermediates), agreeing with the high number of sensory/regulatory proteins predicted for both strains. By contrast, central pathways and modules of the energy metabolism were constitutively formed under the tested substrate conditions. In accord with their natural habitats that are subject to fluctuating changes of physicochemical parameters, both <i>Desulfonema</i> strains are well equipped to cope with various stress conditions. Next to superoxide dismutase and catalase also desulfoferredoxin and rubredoxin oxidoreductase are formed to counter exposure to molecular oxygen. A variety of proteases and chaperones were detected that function in maintaining cellular homeostasis upon heat or cold shock. Furthermore, glycine betaine/proline betaine transport systems can respond to hyperosmotic stress. Gliding movement probably relies on twitching motility via type-IV pili or adventurous motility. Taken together, this proteogenomic study demonstrates the adaptability of <i>Dn. limicola</i> and <i>Dn. magnum</i> to its dynamic habitats by means of flexible catabolism and extensive stress response capacities.
DOI: 10.11583/dtu.9896459
title: V52 Spinner lidar data

description: This data set contains the inflow measurements of DTU's V52 research wind turbine. The inflow measurements are acquired using DTU's spinner lidar and they are provided as a number of NetCDF files containing:<br>1. 2D fields of the radial velocity <br>2. estimated u and v components of the wind3. vertical gradient of the wind<br>4. Reynolds stress tensors<br><br>
DOI: 10.11583/dtu.14058053
title: V52 loads data

description: This dataset contains one full year of loads data of DTU's V52 research wind turbine. The loads data are sampled at 50 Hz and provided as such.<br><br>
DOI: 10.11583/dtu.9896459.v1
title: V52 Spinner lidar data

description: This data set contains the inflow measurements of DTU's V52 research wind turbine. The inflow measurements are acquired using DTU's spinner lidar and they are provided as a number of NetCDF files containing:<br>1. 2D fields of the radial velocity <br>2. estimated u and v components of the wind3. vertical gradient of the wind<br>4. Reynolds stress tensors<br><br>
DOI: 10.6084/m9.figshare.14060639
title: Identification of one plasmid harboring tmexCD1-toprJ1 in clinical Klebsiella pneumoniae

description: Two clinical <i>K. pneumoniae</i><i> </i>strains coharboring carbapenemase genes and novel <i>tmexCD1</i>-<i>toprJ1</i><i> </i>RND efflux pump were characterized here. The novel RND efflux pump gene cluster <i>tmexCD1</i>-<i>toprJ1</i><i> </i>coexisted with <i>bla</i><sub>NDM-1</sub> or <i>bla</i><sub>KPC-2</sub> in IncHI5-like and IncFII conjugative plasmids. This study highlights the emerging convergence of carbapenemase genes and <i>t</i><i>mexCD1</i>-<i>toprJ1</i> in typical MDR plasmids among clinical <i>K. pneumoniae</i>, which threatens treatments of CRKP infections. Epidemiology of such pathogens is warranted intensive investigations to evaluate the public health risk.
DOI: 10.6084/m9.figshare.14060639.v1
title: Identification of one plasmid harboring tmexCD1-toprJ1 in clinical Klebsiella pneumoniae

description: Two clinical <i>K. pneumoniae</i><i> </i>strains coharboring carbapenemase genes and novel <i>tmexCD1</i>-<i>toprJ1</i><i> </i>RND efflux pump were characterized here. The novel RND efflux pump gene cluster <i>tmexCD1</i>-<i>toprJ1</i><i> </i>coexisted with <i>bla</i><sub>NDM-1</sub> or <i>bla</i><sub>KPC-2</sub> in IncHI5-like and IncFII conjugative plasmids. This study highlights the emerging convergence of carbapenemase genes and <i>t</i><i>mexCD1</i>-<i>toprJ1</i> in typical MDR plasmids among clinical <i>K. pneumoniae</i>, which threatens treatments of CRKP infections. Epidemiology of such pathogens is warranted intensive investigations to evaluate the public health risk.