cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8fs4cu
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja trachura (Gilbert, 1892)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038280-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3667510_d1
title: Additional file 1: of Do patients prefer optimistic or cautious psychiatrists? An experimental study with new and long-term patients

description: Data set video clips BMC Psychiatry spreadsheet. (XLS 168 kb)
DOI: 10.6084/m9.figshare.c.3667570_d1
title: MOESM2 of Real-time inverse kinematics for the upper limb: a model-based algorithm using segment orientations

description: Additional file 2. Marker sets defined for the study.
DOI: 10.6084/m9.figshare.c.3667570_d2.v1
title: MOESM1 of Real-time inverse kinematics for the upper limb: a model-based algorithm using segment orientations

description: Additional file 1. OpenSim version of the used upper limb model.
DOI: 10.6084/m9.figshare.c.3667573_d1
title: Additional file 2: of Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq

description: Table of genes differentially expressed between nonclassical and classical monocytes in four reference studies, identified using limma and SAM, and their intersections with each other and annotated features in GRCh37. (XLSX 2721 kb)
DOI: 10.6084/m9.figshare.c.3667570_d2
title: MOESM1 of Real-time inverse kinematics for the upper limb: a model-based algorithm using segment orientations

description: Additional file 1. OpenSim version of the used upper limb model.
DOI: 10.6084/m9.figshare.c.3667573_d3.v1
title: Additional file 6: of Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq

description: Table of workflow performance, including values and ranks for recall and precision, for each workflow against each reference dataset. (XLSX 189 kb)
DOI: 10.6084/m9.figshare.c.3667573_d3
title: Additional file 6: of Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq

description: Table of workflow performance, including values and ranks for recall and precision, for each workflow against each reference dataset. (XLSX 189 kb)
DOI: 10.6084/m9.figshare.c.3667573_d4.v1
title: Additional file 5: of Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq

description: Table of number of significant genes identified, for each workflow against each reference dataset. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3667573_d4
title: Additional file 5: of Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq

description: Table of number of significant genes identified, for each workflow against each reference dataset. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3668698_d1.v1
title: Additional file 1: of A two-phase approach for the identification of refugees with priority need for mental health care in Lebanon: a validation study

description: “data leban”, containing study dataset as excel (.xls) file. (XLS 333 kb)
DOI: 10.6084/m9.figshare.c.3668698_d1
title: Additional file 1: of A two-phase approach for the identification of refugees with priority need for mental health care in Lebanon: a validation study

description: “data leban”, containing study dataset as excel (.xls) file. (XLS 333 kb)
DOI: 10.15468/dl.tevn47
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathysolea profundicola (Vaillant, 1888)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 30 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038282-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3668731_d4.v1
title: Additional file 2: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

description: LNA oligonucleotides used for customized sequencing on the MiSeq platform. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3668731_d4
title: Additional file 2: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

description: LNA oligonucleotides used for customized sequencing on the MiSeq platform. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3668758_d1
title: Additional file 4: of Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

description: List of SNP marker names and genome locations. (TXT 3 kb)
DOI: 10.6084/m9.figshare.c.3668728_d7.v1
title: MOESM1 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 1: Table S1. RNASeq differential expression analysis of iPSC derived cardiomyocytes following 48Â h treatment with trastuzumab.
DOI: 10.6084/m9.figshare.c.3668728_d7
title: MOESM1 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 1: Table S1. RNASeq differential expression analysis of iPSC derived cardiomyocytes following 48Â h treatment with trastuzumab.
DOI: 10.6084/m9.figshare.c.3668731_d5.v1
title: Additional file 1: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

description: Sequences of universal primers and indices used to achieve the multiplexing of up to 478 samples. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3668758_d2.v1
title: Additional file 3: of Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

description: List of PANTHER Overrepresentation Test results. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.27923095
title: Natural enemies of <i>Varroa destructor</i> identified from Eastern North American honey bee colonies: a biological survey of candidates for mite control from Maryland, USA

description: A survey was conducted of microbes and arthropods associated with <i>Varroa destructor</i> (Acari: Varroidae) mites (hereafter, <i>Varroa</i>) collected from honey bee colonies in Maryland, USA. Live <i>Varroa</i> were challenged with samples of both microbes and arthropods and assessed for their potential as biocontrol agents against the mites. To our knowledge, this is the first survey of natural enemies of <i>Varroa</i> conducted in North American honey bee colonies. The survey revealed 21 fungi, 25 bacteria, one nematode, and 8 arthropod species associated with <i>Varroa</i> in honey bee colonies, and from challenge assays using 11 of these, including 4 species of fungi, 2 species of bacteria, a parasitic nematode, 2 insects (Hemiptera and Hymenoptera), and 2 arachnids (Pseudoscorpiones) were capable of killing <i>Varroa</i>. This assemblage of <i>Varroa</i> natural enemies was similar to taxa identified from surveys conducted elsewhere globally, suggesting there is a core assemblage of organisms capable of killing <i>Varroa</i> that are best suited to tolerate the sometimes-hostile abiotic and biotic conditions of the hive environment. Generally, entomopathogenic fungi and bacteria assessed in our study showed the highest efficacy against <i>Varroa</i>, and for some, efficacy was comparable to that determined by other researchers, suggesting entomopathogenic fungi and bacteria appear to be the most promising candidates for development into commercially viable varroicides. A novel parasitic nematode identified from our survey killed greater than 90% of infected hosts. In addition, the behaviours of some arthropods toward <i>Varroa</i> observed in our study were indicative of predation on the mites.
DOI: 10.6084/m9.figshare.c.3668731_d5
title: Additional file 1: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

description: Sequences of universal primers and indices used to achieve the multiplexing of up to 478 samples. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3668758_d2
title: Additional file 3: of Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

description: List of PANTHER Overrepresentation Test results. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3668728_d8.v1
title: MOESM3 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 3: Table S2. RNASeq differential expression analysis of iPSC derived cardiomyocytes following 48Â h treatment with lapatinib.
DOI: 10.6084/m9.figshare.c.3668728_d8
title: MOESM3 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 3: Table S2. RNASeq differential expression analysis of iPSC derived cardiomyocytes following 48Â h treatment with lapatinib.
DOI: 10.6084/m9.figshare.c.3668758_d3.v1
title: Additional file 1: of Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

description: Summary information for candidate sweep regions. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3668728_d9.v1
title: MOESM5 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 5: Table S3. Gene ontology enrichment analysis of trastuzumab induced differentially expressed genes in ERBB2 overexpressing cancer cell lines.
DOI: 10.6084/m9.figshare.c.3668758_d3
title: Additional file 1: of Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens

description: Summary information for candidate sweep regions. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3668728_d9
title: MOESM5 of The antineoplastic drug, trastuzumab, dysregulates metabolism in iPSC-derived cardiomyocytes

description: Additional file 5: Table S3. Gene ontology enrichment analysis of trastuzumab induced differentially expressed genes in ERBB2 overexpressing cancer cell lines.
DOI: 10.6084/m9.figshare.c.3668731_d6.v1
title: Additional file 3: of Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

description: Primers used for amplification of genomic DNA using NEXTERA XT and targeted BS-Seq (Fig. 3). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3668809_d2.v1
title: Additional file 2: of Effect of patientâ  s age on the profitability of inpatient cardiac catheterization: a contribution margin analysis of frequently performed procedures over a 5-year period

description: Original anonymous data set. (XLS 9209Â kb)
DOI: 10.6084/m9.figshare.c.3668788_d6.v1
title: Additional file 8: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

description: Most differentially expressed genes identified by analysis of DEGs in TW-1-M relative to TW-1. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3668809_d2
title: Additional file 2: of Effect of patientâ  s age on the profitability of inpatient cardiac catheterization: a contribution margin analysis of frequently performed procedures over a 5-year period

description: Original anonymous data set. (XLS 9209Â kb)
DOI: 10.6084/m9.figshare.c.3668806_d2
title: Additional file 6: of An SNP-based saturated genetic map and QTL analysis of fruit-related traits in Zucchini using Genotyping-by-sequencing

description: List of genes underlying the significant QTLs involved in vine, flowering and fruit traits variation annotated in the last version of the C. pepo genome (v 3.2) available [13]. (XLSX 146 kb)
DOI: 10.6084/m9.figshare.c.3668788_d6
title: Additional file 8: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

description: Most differentially expressed genes identified by analysis of DEGs in TW-1-M relative to TW-1. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3668797_d6.v1
title: Additional file 9: Table S9. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (multiple group comparisons) with permutation test in chicken. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3668788_d7.v1
title: Additional file 2: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

description: A table with the FPKM value of each soybean gene in each of the 18 libraries. (XLSX 5827 kb)
DOI: 10.6084/m9.figshare.c.3668797_d6
title: Additional file 9: Table S9. of Conserved gene expression in sperm reservoirs between birds and mammals in response to mating

description: Differentially expressed genes (multiple group comparisons) with permutation test in chicken. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3668788_d7
title: Additional file 2: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

description: A table with the FPKM value of each soybean gene in each of the 18 libraries. (XLSX 5827 kb)
DOI: 10.6084/m9.figshare.c.3668788_d8.v1
title: Additional file 6: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

description: Enriched KEGG pathways in the TW-1-M and TW-1 libraries. (XLSX 293 kb)
DOI: 10.6084/m9.figshare.c.3668788_d8
title: Additional file 6: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

description: Enriched KEGG pathways in the TW-1-M and TW-1 libraries. (XLSX 293 kb)
DOI: 10.15468/dl.7g884g
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytoshia centroura (Mitchill, 1815)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 56 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038284-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3669856_d2
title: MOESM3 of Application of 3D printing to prototype and develop novel plant tissue culture systems

description: Additional file 3. STL (StereoLithography) file was designed for culture vessel (box) using SketchUp or Fusion 360 (Autodesk) software and the STL file was processed using MatterControl 3D printing software and exported as gcode files.
DOI: 10.6084/m9.figshare.c.3669886_d2.v1
title: Additional file 6: Table S7. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: GSEA results based on gene expression data from trimer treated plants, disregarding genesets also affected by long OGs at 3Â h (Denoux et al. 2008). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3669856_d3.v1
title: MOESM5 of Application of 3D printing to prototype and develop novel plant tissue culture systems

description: Additional file 5. STL (StereoLithography) file was designed for an accessory lid with fan slot using SketchUp or Fusion 360 (Autodesk) software and the STL file was processed using MatterControl 3D printing software and exported as gcode files.
DOI: 10.6084/m9.figshare.c.3669886_d2
title: Additional file 6: Table S7. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: GSEA results based on gene expression data from trimer treated plants, disregarding genesets also affected by long OGs at 3Â h (Denoux et al. 2008). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3669889_d1.v1
title: Additional file 4: Table S3. of Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

description: Annotated genes in Hyphomonadaceae UKL13-1 Illumina breaks. Genes called and annotated with PROKKA. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3669856_d3
title: MOESM5 of Application of 3D printing to prototype and develop novel plant tissue culture systems

description: Additional file 5. STL (StereoLithography) file was designed for an accessory lid with fan slot using SketchUp or Fusion 360 (Autodesk) software and the STL file was processed using MatterControl 3D printing software and exported as gcode files.
DOI: 10.6084/m9.figshare.c.3669889_d1
title: Additional file 4: Table S3. of Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

description: Annotated genes in Hyphomonadaceae UKL13-1 Illumina breaks. Genes called and annotated with PROKKA. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3669889_d2.v1
title: Additional file 1: Table S1. of Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

description: Taxonomic placement of each novel genome by 16S similarity, composition (PhyloPythiaS+), and multiple marker gene similarities (Phylosift). (CSV 312 bytes)
DOI: 10.6084/m9.figshare.c.3669886_d9
title: Additional file 5: Table S6. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: GSEA result of genes affected in expression by both Trimers (3 h) and long OGs (1 h and 3 h-Denoux et al. 2008). (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3669919_d4.v1
title: Additional file 10: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Distribution of CSTs as a function of ethnicity and gestation at birth in cross-sectional cohort.
DOI: 10.6084/m9.figshare.c.3669919_d4
title: Additional file 10: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Distribution of CSTs as a function of ethnicity and gestation at birth in cross-sectional cohort.
DOI: 10.6084/m9.figshare.c.3669886_d10.v1
title: Additional file 4: Table S5. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: GSEA result of genes affected similarly in expression by both trimers and long OGs at 3Â h (Denoux et al. 2008). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3669886_d10
title: Additional file 4: Table S5. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: GSEA result of genes affected similarly in expression by both trimers and long OGs at 3Â h (Denoux et al. 2008). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3669925_d5.v1
title: MOESM15 of Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression

description: Additional file 15: Table S6. Primers used in this study.
DOI: 10.6084/m9.figshare.c.3669886_d11.v1
title: Additional file 2: Table S3. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: Genes significantly affected in expression (Fold Change) by treatment with trimers at 3 h (Trimers), long OGs at 1 h in the study by Denoux et al. 2008 (Long OGs 1 h) and long OGs at 3 h in the study by Denoux et al. 2008 (Long OGs 3 h). (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3669925_d5
title: MOESM15 of Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression

description: Additional file 15: Table S6. Primers used in this study.
DOI: 10.6084/m9.figshare.c.3669886_d11
title: Additional file 2: Table S3. of Short oligogalacturonides induce pathogen resistance-associated gene expression in Arabidopsis thaliana

description: Genes significantly affected in expression (Fold Change) by treatment with trimers at 3 h (Trimers), long OGs at 1 h in the study by Denoux et al. 2008 (Long OGs 1 h) and long OGs at 3 h in the study by Denoux et al. 2008 (Long OGs 3 h). (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3669919_d13.v1
title: Additional file 15: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Mixed-effects model comparing relative species abundance in control and progesterone groups.
DOI: 10.6084/m9.figshare.c.3669925_d14
title: MOESM8 of Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression

description: Additional file 8: Table S3. Relative enzyme activity per dried cell weight (gram) vs. WT and Studentâ  s t-test of FigureÂ 5C.
DOI: 10.6084/m9.figshare.c.3669919_d13
title: Additional file 15: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Mixed-effects model comparing relative species abundance in control and progesterone groups.
DOI: 10.6084/m9.figshare.c.3669940_d8.v1
title: Additional file 1: of Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies

description: Table S1. Orthologous sequences used and identified in this study. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3669919_d14.v1
title: Additional file 11: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Gestational age at vaginal sampling in high-risk control and progesterone groups.
DOI: 10.6084/m9.figshare.c.3669940_d8
title: Additional file 1: of Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies

description: Table S1. Orthologous sequences used and identified in this study. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3669967_d2.v1
title: MOESM2 of Effects of Plasmodium falciparum infection on umbilical artery resistance and intrafetal blood flow distribution: a Doppler ultrasound study from Papua New Guinea

description: Additional file 2. Malaria infection, nutritional factors, smoking, and other potential associations with elevated umbilical artery resistance index (UARI, &gt;90th centile) during pregnancy in PNG women In contrast to other cohorts, nutritional factors such as MUAC, height and anaemia were not associated with increased UARI. Smoking tobacco, a known risk factor for elevated UARI approached significance (PÂ =Â 0.085) while other risk behaviours, such as chewing betelnut and drinking alcohol, showed no association.