cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/d6pk5c
title: Supplementary Data for Reconstructing Past Craft Networks: A case study using 3D scans of Late Bronze Age swords to reconstruct specialized craft networks, PhD. Dissertation

description: The data included here are supplemental data associated with the dissertation "Reconstructing Past Craft Networks: A case study using 3D scans of Late Bronze Age swords to reconstruct specialized craft networks." by Kristina Golubiewski-Davis.  The dissertation is an examination of Late Bronze Age sword smiths wherein the author uses shape data as an indication of manufacture choices to reconstruct possible social networks. Included are .csv files of the Network matrices, blade profile .bmp images, Fourier transform data, and the data gathered for statistics.  Also included is the annotated SAS routine used to analyze the data.  The Data were analyzed using SHAPE V1.3, SAS 9.4, and GEPHI 0.8.2.  The data is being released with the publication of the dissertation.
description: This dataset includes .csv files of the network matrices, blade profile .bmp images, Fourier transform data, and the data gathered for statistics.  Also included is the annotated SAS routine used to analyze the data.  The Data were analyzed using SHAPE V1.3, SAS 9.4, and GEPHI 0.8.2.  The data is being released with the publication of the dissertation.
DOI: 10.13020/f1dn-mq40
title: Data in support of: Quantifying resilience of coldwater habitat to climate and land use change to prioritize watershed conservation

description: Data for 12,450 lakes in the Upper Midwestern United States used to predict coldwater, oxygenated habitat and how it is predicted to change under scenarios of climate and land use change. Specific fields include lake size, depth, watershed landuse, air temperature characteristics, and presence of the coldwater fish Cisco (Coregonus artedi). Also included are projected air temperatures under mid-Century conditions for each lake.
description: File List
   A. Filename: Data - MGLP TDOx Models2.csv       
      Short description: lake characteristics of glacial lakes in the upper Midwestern United States used for estimating coldwater habitat.

       
   B. Filename: mid_century_means_by_gcm_cisco_lakes.csv
      Short description: Projected mean July temperatures for 2040-2059 under six global circulation models that represent a range of responses to climate change (Notaro et al. 2015a, Notaro et al. 2015b). The six GCMs were ACCESS, CNRM, GFDL, IPSL, MIROC5, and MRI (described in more detail in Winslow et al. 2017), and all were driven by the representative concentration pathway 8.5 (RCP8.5), which assumes continued growth in carbon emissions through the end of the century and thus is a high-end warming scenario. Temperature projections were obtained for each lake centroid using the geoknife() package (Read et al. 2015).  
C. Filename: code_1_model_selection_cross_validation.R
	Short description: R code for fitting and selecting generalized additive models for predicting TDO3 from lake characteristics. Also includes R code for fitting a generalized additive model quantifying the relationship between the presence of the coldwater fish cisco TDO3 and in order to estimate habitat tiers.

D. Filename: code_2_estimate_resilience_and_uncertainty.R
	Short description: R code for predicting TDO3 for all lakes under current and future climate conditions, estimating uncertainty in predictions, and quantifying resilience of lakes to watershed development and climate change. 
  
2. Relationship between files:        
Lakes are indexed by mglp_id in both data files.
Code2 uses models and thresholds  identified in code1. Both R code files read in data files.
DOI: 10.13020/d6d39k
title: Natural selection and neutral evolutionary processes contribute to genetic divergence in leaf traits across a precipitation gradient in the tropical oak Quercus oleoides

description: The impacts of drought are expanding worldwide as a consequence of climate change. However, there is still little knowledge of how species respond to long-term selection in seasonally-dry ecosystems. In this study, we used QST-FST comparisons to investigate (i) the role of natural selection on population genetic differentiation for a set of functional traits related to drought resistance in the seasonally-dry tropical oak Quercus oleoides and (ii) the influence of water availability at the site of population origin and in experimental treatments on patterns of trait divergence. We conducted a thorough phenotypic characterization of 1896 seedlings from ten populations growing in field and greenhouse common gardens under replicated watering treatments. We also genotyped 222 individuals from the same set of populations using eleven nuclear microsatellites. The data sets include all of the raw data used in the analyses include nuclear microsatellites from populations examined in the field common garden, phenotypic data from a field common garden, nuclear microsatellites from populations examined in a greenhouse experiment, and phenotypic data from a field common garden.
description: Deposited here are four datasets containing the raw data of the described study. More information about individual files can be found in the Readme.
DOI: 10.13020/3dwv-wv71
title: Data for Huzinaga Projection Embedding for Efficient and Accurate Energies of Systems with Localized Spin-densities

description: All relevant output files for open-shell ground state Huzinaga embedding WF-in-DFT energy calculations.
description: Geometry files are stored in xyz format. Geometries are optimized using the method defined within the accompanying text. QSoME output files are stored as out files and readable in ascii text format.
DOI: 10.13020/d6d97w
title: Data from range-wide study of migratory connectivity of Vermivora warblers

description: This collection of files provide data from a range-wide study of the migratory ecology of Vermivora warblers. Data include raw light-level data from geolocators, R code, and associated output. These data can be used to recreate analyses including:

(1) Individual nonbreeding occurrence and population-level nonbreeding overlap
(2) Individual migration routes and spatial distribution of individuals and populations during migration
description: See ReadMe.txt for detailed description of files.
DOI: 10.13020/pgn6-3m47
title: Supporting data for: Numerical Study of Near-Surface Jet in the Atmospheric Surface Layer over Oceanic Fronts 

description: Simulation data used for figures in "Numerical study of near-surface jet in the atmospheric surface layer over oceanic fronts" including the mean velocity profiles, the turbulent variance profiles, the vortex structures, the streamwise momentum flux, the surface shear stress, and the local gradient Richardson number, etc. The data was generated and written by our in-house codes. Its format matches the requirement of the software Tecplot, and hence users can open the data using Tecplot.
description: The data are results of the numerical simulation of the near-surface jet in the atmospheric surface layer across oceanic fronts, described in the paper by Deng, Zhao, Wang, and Shen (submitted to JGR-Atmosphere). The data are shared to follow the common Enabling FAIR data Project guidelines as required by the journal.
description: Simulation data used for figures in "Numerical study of near-surface jet in the atmospheric surface layer over oceanic fronts" including the mean velocity profiles, the turbulent variance profiles, the vortex structures, the streamwise momentum flux, the surface shear stress, and the local gradient Richardson number, etc. The data was generated and written by our in-house codes. Its format matches the requirement of the software Tecplot, and hence users can open the data using Tecplot.
DOI: 10.13020/d6vc7m
title: Triclosan, Chlorinated Triclosan Derivative, and Dioxin Levels in Minnesota Lakes

description: The data were collected and generated during the period of 2010-2012 by collecting sediment cores from lakes in Minnesota, dating the years the sediment was deposited as a function of depth, and extracting sections of the cores with solvent to determine the levels of triclosan (TCS), chlorinated triclosan derivatives (CTD), and dioxins in the sediment (PCDD). Dating was performed at the St. Croix Watershed Research Station, triclosan and chlorinated triclosan derivative measurements at the University of Minnesota Department of Civil Engineering, and dioxin analysis by Pace Analytical. 

The data consists of eight Excel files that include the following tabs 1) accumulation rate and focus corrected accumulation rate of the target contaminants as function of time (FF_Flux), 2) the concentrations of the target contaminants and function of time, 3) the calibration curves of the instruments for triclosan and chlorinated triclosan derivatives, and 4) various statistical analyses (ANOVA).

Note that the further back in time, the deeper the sediment that the sample was derived from.
description: The Microsoft Excel files (.xls) are available in their original form. For preservation and long-term access, the multiple-tab structure of the excel files have been converted to comma separated value (.csv) files and included here as a zip. The data is identical in these two versions, except that the archived version will not include any special formatting of the excel files (colored cells, bold, etc.) or graphs generated from the data.
DOI: 10.13020/e1fe-sb56
title:  A bedform tracking tool coupled with Fast Fourier Transform decomposition 

description: Quantifying bedform characteristics is crucial because bedforms are omnipresent and play an important role in fluvial environments. Bedforms induce form drag against flows and can significantly alter water depth, flow velocity, and sediment transport rate (i.e. the hydraulic roughness of channels can be parameterized with bedforms). In addition, ship navigation can be constrained by the presence and distributions of bedform crests; and localized scour within bedform troughs can deteriorate performance of fluvial infrastructures (e.g. containment walls, embedded pipes, or groynes). Despite of its importance, characterizing bedforms has been challenges due to inherent multi-scale features observed in channel bathymetries in both natural rivers and laboratory flumes. To tackle such challenges, we developed a bedform tracking tool coupled with Fast Fourier Transform (FFT) decomposition. A key advantage of the presented bedform tracking method is that bedform characteristics (morphology and kinematics) can be quantified in a wider range of scales.
description: This bedform tracking tool identifies bedforms based on the sign change of the gradient of streambed profiles, dz/dx. Before fed to the bedform tracking algorithm, bed elevation profiles (BEPs) are filtered using Fast Fourier Transform (FFT) decomposition to extract large bedforms buried underneath superimposed secondary bedform features. Thereafter, characteristics (morphology and kinematics) of individual bedforms are quantified. Please refer README for more details.
DOI: 10.13020/zfkr-6b35
title: Forests and Biodiversity cleaned biomass survey data 2013-2018

description: This dataset includes annual growth survey measurements from the Forests and Biodiversity 1 (e271) experiment at Cedar Creek Ecosystem Science Reserve in East Bethel, MN. The dataset also includes a script that allows users to reproduce the figures and statistics reported in the cited paper. This version of the dataset is specifically meant to support the inferences in that paper, rather than serving as the version of record. Please consult the Cedar Creek Data Catalog (https://www.cedarcreek.umn.edu/research/data) to find the authoritative version to be used for general purposes.
DOI: 10.13020/d6t106
title: Gap-filled USGS sensor data for nitrate, discharge and temperature for selected sites in Iowa, U.S.A.

description: The raw data used in this project are available through the United States Geological Survey National Water Information System data portal. More information about this project and the associated files can be found in the Readme.
DOI: 10.13020/02y1-yz02
title: Plant wood and reproductive anatomy collected from 2014 to 2016 on wood plants growing at the Arnold Arboretum in Boston, MA

description: These data were collected for a project examining the relationship between vascular and floral phenology in plants that flower precocious before they have leaves. Reproductive and xylem data was collected on 5-6 individuals of 10 species with one species in each genus exhibiting precocious flowering.
description: There are two CSV files and a readme file. The CSV files contain information on reproductive anatomy and xylem anatomy.
DOI: 10.13020/7zyy-0125
title: Bulgarella et al. Philornis Pterin Data

description: Parasites of seasonally available hosts must persist through times of the year when hosts are unavailable.  In tropical environments, host availability is often linked to rainfall, and adaptations of parasites to dry periods remain understudied.  The bird-parasitic fly Philornis downsi has invaded the Galapagos Islands and is causing high mortality of Darwin’s finches and other bird species, and the mechanisms by which it was able to invade the islands successfully are of great interest to conservationists.  In the dry lowlands, this fly persists over a seven-month cool season when availability of hosts is very limited.  We tested the hypothesis that adult flies could survive from one bird-breeding season until the next by using a pterin-based age-grading method to estimate the age of P. downsi captured during and between bird-breeding seasons.  This study showed that significantly older flies were present towards the end of the cool season, with ~5% of captured females exhibiting estimated ages greater than seven months.  However, younger flies also occurred during the cool season suggesting that some reproduction occurs when host availability is low.  We discuss the possible ecological mechanisms that could allow for a such a mixed strategy.
description: This submission contains 7 CSV or text files with data presented and analyzed in the manuscript by Bulgarella et al. titled, 'Persistence of the invasive bird-parasitic fly Philornis downsi over the host interbreeding period in the Galapagos Islands'.
DOI: 10.13020/zbm3-9d68
title: Le Sueur River Basin Sediment Characterization - chemical and physical properties of sediments collected 2015-2018

description: These data were collected in support of the development of a watershed budget for sediment-derived phosphorus for the Le Sueur River Basin. This table presents the results of analyses of sediment total phosphorus and extractable dissolved phosphorus (soluble reactive phosphorus, SRP, or dissolved orthophosphate, DOP) and other chemical and physical parameters with potential influence over the phosphorus content of these sediments. This data set consists of 97 samples collected from erosional source areas including agricultural fields and ditches, near channel features such as bluffs, streambanks, and ravines, and from sinks such as channel beds and fluvial suspended sediment.
DOI: 10.13020/d6595z
title: Minnesota Pollution Control Agency Wild Rice Sulfate Standard Mesocosm Study: water, sediment, and porewater "synoptic" sampling 2013 and 2015

description: This dataset represents opportunistic, "synoptic" sampling of 30 experimental mesocosms for chemical parameters. The mesocosm experiments were undertaken by Dr. John Pastor (UMN-Duluth) and the Minnesota Pollution Control Agency (MPCA) to improve the understanding of why wild rice (Zizania palustris, manoomin, psin) is observed to thrive only in waters with low sulfate (SO4), and to contribute to evaluation of Minnesota Rules 7050.0224, promulgated in 1973, which seeks to limit the exposure of wild rice to sulfate concentrations exceeding 10 mg/L.The dataset is now released as manuscripts using it are being published.
description: Comprises the dataset analyzed in manuscript by Myrbo et al (Journal of Geophysical Research-Biogeosciences).
DOI: 10.13020/0bdt-m193
title:  Data for: Determinants and consequences of plant-insect phenological matching for a non-native herbivore on a deciduous conifer: implications for invasion success
DOI: 10.13020/znag-tn48
title: Data supporting the comparison of golden-winged warbler and American woodcock productivity in northern Minnesota, USA

description: Spatially explicit predicted reproductive output for golden-winged warblers and American woodcock at Tamarac National Wildlife Refuge, Minnesota, USA used to compare reproductive output of woodcock and warblers in Kramer et al. (2019; DOI:https://doi.org/10.1016/j.biocon.2019.02.039). Models developed by Peterson (2014: http://hdl.handle.net/11299/167309),Peterson et al. (2016) rely on raw demographic data for golden-winged warblers collected and reported by Peterson (2014; http://hdl.handle.net/11299/167309). Models developed by Kramer (2017; http://hdl.handle.net/11299/188784) and Kramer et al. (in press) use raw demographic data for American woodcock collected and reported by Daly (2014; http://hdl.handle.net/11299/167288).
description: See ReadMe.txt for detailed description of files. Files include model-predicted productivity for both species (raster), digitized land-cover type classification of study area (shapefile), predicted productivity of both species at observed nesting sites, and  R code to make the statistical comparisons and produce the graphs in Kramer et al. (2019).
DOI: 10.13020/d62h4q
title: 15N labeling of amino acids in Spirodela Polyrhiza

description: These data comprise15N stable isotopic labeling study of amino acids in Spirodela polyrhiza (common duckweed) grown under three different light and carbon input conditions which represent unique potential metabolic modes. Plants were grown with a light cycle, either with supplemental sucrose (mixotrophic) or without supplemental sucrose (photoautotrophic) and in the dark with supplemental sucrose (heterotrophic). In this study, stable isotopic labeling with 15N of S. polyrhiza allowed for estimation of amino acid pool sizes, turnover, and kinetics.
description: Deposited here are data files for the experiment described. There are two top-level Readme files as well as Readmes for each archived .zip file, all of which describe the files at length.
DOI: 10.13020/d6096s
title: Data, R Code, and Output Supporting "An Historical Overview and Update of Wolf-Moose Interactions in Northeastern Minnesota"

description: These files contain data and R code (along with associated output from running the code) supporting all results reported in, "Mech, L. D., J. Fieberg, and S. Barber-Meyer. In press. An historical overview and update of wolf-moose interactions in Northeastern Minnesota. Wildlife Society Bulletin." In this paper, we explored relationships between wolf numbers, monitored in part of the Minnesota moose range, and moose calf:population and estimated log annual growth rates of moose in Northeast Minnesota.
description: The html files contain R code and output for analyzing MooseWolfDataUpdated.csv. The R files used to generate the html documents can be found in the zip file. See readme.txt for more details.
DOI: 10.13020/d6t11k
title: Camera Trap Images used in "Identifying Animal Species in Camera Trap Images using Deep Learning and Citizen Science"

description: This dataset provides the camera trap images used in "Identifying Animal Species in Camera Trap Images using Deep
Learning and Citizen Science" as well as meta-data about the images. The Snapshop Serengeti collection includes 6,163,870 images in JPG format. The Snapshot Wisconsin collection includes 497,204 images in JPG format. The Camera CATalogue collection include 506,241 images in JPG format. Excluded are the images for the dataset "Elephant Expedition" which will be published separately outside DRUM. Also excluded are images of humans due to privacy reasons.
description: All images were downloaded from Zooniverse and have been resized to 330x330 pixels.
DOI: 10.13020/j7fw-2g91
title:  Content of leaf pigments of tree and grassland species collected at the Cedar Creek Ecosystem Science Reserve in 2015 and 2016 

description: This data set contains the content of chlorophyll a, chlorophyll b, β-carotene, lutein, neoxanthin, violaxanthin, antheraxanthin and zeaxanthin pigments from tree and grassland species sampled at the Cedar Creek Ecosystem Science Reserve in East Bethel, MN. Mass- and area-based pigment contents were determined using high-performance liquid chromatography (HPLC). Data were collected as part of the Dimensions of Biodiversity project “Linking remotely sensed optical diversity to genetic, phylogenetic and functional diversity to predict ecosystem processes”. Samples were collected in or near the old fields chronosequence, the oak savanna, and the Forest and Biodiversity Experiment (FAB 1) plots. We used this data together with leaf-level spectral measurements to build partial least squares regression (PLSR) models for predicting leaf traits from spectra.
DOI: 10.13020/d6t97m
title: Supporting data for Consequences of Grafting Density on the Linear Viscoelastic Behavior of Graft Polymers

description: These files contain data along with associated output from instrumentation supporting all
results reported in Haugan et. al. "Consequences of Grafting Density on the Linear Viscoelastic Behavior of Graft Polymers." In Haugan et. al. we found: The linear viscoelastic behavior of poly(norbornene)-graft-poly(±-lactide) was investigated as a function of grafting density and overall molar mass. Eight sets of polymers with grafting densities ranging from 0–100% were synthesized by living ring-opening metathesis copolymerization. Within each set, the graft chain molar mass and spacing between grafts were fixed while the total backbone length was varied. Dynamic master curves reveal that these polymers display Rouse and reptation dynamics with a sharp transition in the zero-shear viscosity data demonstrating that grafting density strongly impacts the entanglement molar mass. The entanglement modulus (Ge) scales with inverse grafting density (ng) as Ge ~ ng1.2 and Ge ~ ng0 in accordance with scaling theory in the high and low grafting density limits, respectively. However, a sharp transition between these limiting behaviors occurs, which does not conform to existing theoretical models for graft polymers. A molecular interpretation based on thin flexible chains at low grafting density and thick semiflexible chains at high grafting density anticipates the sharp transition between the limiting dynamical regimes.
description: The folder below include the NMR, SEC, DSC, SAXS, and rheology data for all reported samples. The zipped folder contains each series of data in a subfolder, and the readme file further describes the individual files.
DOI: 10.13020/2vf6-y268
title: Replica-averaged orientational-restrained ensembles of DWORF and P15A-DWORF in lipid bilayers

description: Replica-averaged orientational-restrained molecular dynamics (RAOR-MD) ensembles of DWORF and the DWORF-P15A mutant in lipid bilayers. Restrained to 15N chemical shift anisotropy and 1H-15N dipolar coupling data obtained from oriented sample solid-state NMR spectroscopy.
DOI: 10.13020/d6xt36
title: Entropic trap purification of long DNA

description: The data included in this folder are the raw data for the published paper in Lab on a Chip Journal (Lab Chip, 2018, 18, 955). This data has been deposited to DRUM to provide public access to the data and to help reproduce the work.