cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a27fwm
title: Occurrence Download

description: A dataset containing 2041 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Geometry POLYGON ((-130.7383528944533 -59.46314024951374, -130.7383528944533 32.71876227804215, -26.26729810228821 32.71876227804215, -26.26729810228821 -59.46314024951374, -130.7383528944533 -59.46314024951374))",
 "OccurrenceStatus is Present",
 "TaxonKey is Eupherusa ridgwayi (Nelson, 1900)"
 ]
}

 The dataset includes 2041 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051104-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4h67s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is 1802612371"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290688-200613084148143/datasets/export for details.
DOI: 10.15468/dl.g1nunr
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sonchus kirkii Hamlin"
 ]
}

 The dataset includes 101 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010031-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bp64e
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 234 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281905-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jm4bnp
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Genista valdes-bermejoi Talavera & L.Sáez"
 ]
}

 The dataset includes 49 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218817-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pp7wyz
title: Occurrence Download

description: A dataset containing 1900 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Emberiza aureola Pallas, 1773"
 ]
}

 The dataset includes 1900 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010034-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snckm9
title: Occurrence Download

description: A dataset containing 9592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((118.9620028097987 21.656643010311154,122.9620028097987 21.656643010311154,122.9620028097987 25.656643010311154,118.9620028097987 25.656643010311154,118.9620028097987 21.656643010311154))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Butastur indicus (Gmelin, 1788)"
 ]
}

 The dataset includes 9592 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252401-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6a89cp
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Macroclemys temminckii (Troost, 1835)",
 "Year 1980-2021"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292782-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx7t3m
title: Occurrence Download

description: A dataset containing 2062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psittacanthus Mart."
 ]
}

 The dataset includes 2062 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258551-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ad5wn
title: Occurrence Download

description: A dataset containing 351 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Browneopsis Huber",
 "TaxonKey is Brachycylix (Harms) R.S.Cowan",
 "TaxonKey is Amherstia Wall."
 ]
}

 The dataset includes 351 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010035-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzg3qc
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((88.65235 41.33283,80.91797 44.59046,74.58985 39.00495,78.57422 30.75127,87.94922 27.47579,94.51172 28.51053,98.02735 24.95286,101.07422 20.85196,104.35547 27.26764,88.65235 41.33283))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Isoetes L."
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252402-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uj7zbr
title: Occurrence Download

description: A dataset containing 1928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Rana forreri Boulenger, 1883"
 ]
}

 The dataset includes 1928 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054516-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8kfsc6
title: Occurrence Download

description: A dataset containing 500396 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Geodetic datum invalid",
 "Issue is Coordinate uncertainty meters invalid",
 "Issue is Country derived from coordinates",
 "Issue is Continent invalid",
 "Issue is Recorded date invalid",
 "Issue is Taxon match fuzzy",
 "Issue is Taxon match higher rank",
 "Issue is Elevation min max swapped",
 "Issue is Type status invalid",
 "Issue is Multimedia date invalid",
 "Issue is Occurrence status inferred from individual count",
 "Issue is Different owner institution"
 ]
 },
 "TaxonKey is Aves",
 "Year 2011-2021"
 ]
}

 The dataset includes 500396 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254536-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afb7bs
title: Occurrence Download

description: A dataset containing 11884453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11884453 records from 2185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051046-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9udt5n
title: Occurrence Download

description: A dataset containing 256929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dermatopsoides kasougae, Dermatopsoides talboti, Diademichthys lineatus, Diagramma labiosum, Dialommus fuscus, Dialommus macrocephalus, Diancistrus alatus, Diancistrus alleni, Diancistrus altidorsalis, Diancistrus atollorum, Diancistrus beateae, Diancistrus brevirostris, Diancistrus eremitus, Diancistrus erythraeus, Diancistrus fijiensis, Diancistrus fuscus, Diancistrus jackrandalli, Diancistrus jeffjohnsoni, Diancistrus karinae, Diancistrus katrineae, Diancistrus leisi, Diancistrus longifilis, Diancistrus machidai, Diancistrus manciporus, Diancistrus mcgroutheri, Diancistrus mennei, Diancistrus niger, Diancistrus novaeguineae, Diancistrus pohnpeiensis, Diancistrus robustus, Diancistrus springeri, Diancistrus tongaensis, Diancistrus vietnamensis, Diapterus auratus, Diapterus rhombeus, Didogobius kochi, Didymothallus mizolepis, Dinematichthys iluocoeteoides, Diodon eydouxii, Diodon holocanthus, Diodon hystrix, Diodon liturosus, Diodon nicthemerus, Diplecogaster ctenocrypta, Diplecogaster megalops, Diplectrum bivittatum, Diplectrum formosum, Diplectrum radiale, Diplodus annularis, Diplodus argenteus, Diplodus bellottii, Diplodus bermudensis, Diplodus capensis, Diplodus cervinus, Diplodus fasciatus, Diplodus holbrookii, Diplodus noct, Diplodus prayensis, Diplodus puntazzo, Diplodus sargus, Diplodus vulgaris, Diplogrammus goramensis, Diplogrammus pauciradiatus, Diplogrammus xenicus, Diploprion bifasciatum, Diploprion drachi, Diproctacanthus xanthurus, Dipterygonotus balteatus, Dipulus caecus, Dipulus hutchinsi, Dipulus norfolkanus, Dischistodus chrysopoecilus, Dischistodus darwiniensis, Dischistodus fasciatus, Dischistodus melanotus, Dischistodus perspicillatus, Dischistodus prosopotaenia, Dischistodus pseudochrysopoecilus, Discordipinna griessingeri, Discotrema crinophilum, Discotrema monogrammum, Discotrema zonatum, Dodekablennos fraseri, Doratonotus megalepis, Doryrhamphus bicarinatus, Doryrhamphus janssi, Doryrhamphus japonicus, Dotalabrus alleni, Dotalabrus aurantiacus, Drepane punctata, Drombus ocyurus, Dunckerocampus baldwini, Dunckerocampus boylei, Dunckerocampus chapmani, Dunckerocampus dactyliophorus, Dunckerocampus multiannulatus, Dunckerocampus naia, Dunckerocampus pessuliferus, Dussumieria acuta, Ebosia falcata)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 256929 records from 574 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008117-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15095090
title: Evaluation of risk promoting effects for age-related macular degeneration by estradiol

description: This work describes effects of reduced estrus on the aged retina under the hypothesis that reduced estrogen levels associate with age-realted macular degeneration.
DOI: 10.5281/zenodo.17464743
title: Evaluation of risk promoting effects for age-related macular degeneration by estradiol

description: This work describes effects of reduced estrus on the aged retina under the hypothesis that reduced estrogen levels associate with age-realted macular degeneration.
DOI: 10.15468/dl.fszaxw
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Astragalus arnoldi"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008338-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14732726
title: A longitudinal single-cell atlas to predict outcome and   toxicity after BCMA-directed CAR T cell therapy   in multiple myeloma

description: This repository contains singularity images and datasets to reproduce the publication figures in: Michael Rade, David Fandrei, Markus Kreuz et al. A longitudinal single-cell atlas to predict outcome and toxicity after BCMA-directed CAR T cell therapy in multiple myeloma

Corresponding github repo: https://github.com/fraunhofer-izi/Rade_et_al_CAR_2025

# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>># Content# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>seurat_objects.tar.gz:



Processed Seurat objects used for publication:06_seurat_harmony_t_all.Rds” is a subset (only T cells) of “05_seurat_harmony_all.Rds”.

05_vdj_t.Rds and 05_vdj_t.Rds: To protect patient privacy, nt and aa sequences of the clones were removed. The names of the clones (originally gene + nt sequence) were renamed using pseudo IDs in this fishare version


cellranger_gex_adt.tar.gz:Cell ranger output for RNA and ADT data. To protect patient privacy, TCR/BCR Cell ranger output (which contains sequences) has been removed.

souporcell.tar.gz:Sourporcell output used for demultiplexing the libraries.

featurer_reference_ADT_10xFeature reference CSV files in which antibody capture constructs and associated barcodes are declared. These files are required for CellRanger.

Table_multiplexing_info.xlsxMultiplexing information for each library and numbers of cells for each sample before and after the filtering steps

Table_cellranger_multi_omics.xlsxQuality control for each 10x library (cellranger output)

Singularity Images and R packages



singularity-rstudio-4-3-2.sif:Singularity image contains R and Rstudio Server. This image was used to produce the results.For a description of how to use it, see: https://github.com/fraunhofer-izi/Rade_et_al_CAR_2025/tree/main/singularity

souporcell_latest.sif:Singularity contain the image souporcell (https://github.com/wheaton5/souporcell) and was used for demultiplexing. Input for souporcell are BAM files (cellranger output).

4_3_2_R_packages.tar.gz:Corresponding R packages
DOI: 10.5281/zenodo.14732727
title: A longitudinal single-cell atlas to predict outcome and   toxicity after BCMA-directed CAR T cell therapy   in multiple myeloma

description: This repository contains singularity images and datasets to reproduce the publication figures in: Michael Rade, David Fandrei, Markus Kreuz et al. A longitudinal single-cell atlas to predict outcome and toxicity after BCMA-directed CAR T cell therapy in multiple myeloma

Corresponding github repo: https://github.com/fraunhofer-izi/Rade_et_al_CAR_2025

# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>># Content# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>seurat_objects.tar.gz:



Processed Seurat objects used for publication:06_seurat_harmony_t_all.Rds” is a subset (only T cells) of “05_seurat_harmony_all.Rds”.

05_vdj_t.Rds and 05_vdj_t.Rds: To protect patient privacy, nt and aa sequences of the clones were removed. The names of the clones (originally gene + nt sequence) were renamed using pseudo IDs in this fishare version


cellranger_gex_adt.tar.gz:Cell ranger output for RNA and ADT data. To protect patient privacy, TCR/BCR Cell ranger output (which contains sequences) has been removed.

souporcell.tar.gz:Sourporcell output used for demultiplexing the libraries.

featurer_reference_ADT_10xFeature reference CSV files in which antibody capture constructs and associated barcodes are declared. These files are required for CellRanger.

Table_multiplexing_info.xlsxMultiplexing information for each library and numbers of cells for each sample before and after the filtering steps

Table_cellranger_multi_omics.xlsxQuality control for each 10x library (cellranger output)

Singularity Images and R packages



singularity-rstudio-4-3-2.sif:Singularity image contains R and Rstudio Server. This image was used to produce the results.For a description of how to use it, see: https://github.com/fraunhofer-izi/Rade_et_al_CAR_2025/tree/main/singularity

souporcell_latest.sif:Singularity contain the image souporcell (https://github.com/wheaton5/souporcell) and was used for demultiplexing. Input for souporcell are BAM files (cellranger output).

4_3_2_R_packages.tar.gz:Corresponding R packages
DOI: 10.15468/dl.npm8z7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica",
 "Country is Antigua and Barbuda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021716-250717081556266/datasets/export for details.
DOI: 10.15468/dl.qrxzuz
title: Occurrence Download

description: A dataset containing 4865 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marrubium supinum"
 ]
}

 The dataset includes 4865 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021717-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkdnze
title: Occurrence Download

description: A dataset containing 1292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium triquetrum",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1292 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021718-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jpm4d
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium triquetrum",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 278 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021719-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkspuc
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana camara",
 "Country is Cabo Verde",
 "HasCoordinate is true"
 ]
}

 The dataset includes 136 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021720-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hg6gc
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia nilotica",
 "Country is Sri Lanka",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021721-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrgt29
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana camara",
 "Country is Central African Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021722-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtxzdv
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana camara",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 448 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021723-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7d22bv
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Elymus dahuricus cylindricus"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021724-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6aeqnc
title: Occurrence Download

description: A dataset containing 388 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amolops hongkongensis"
 ]
}

 The dataset includes 388 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021725-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8h3xnm
title: Occurrence Download

description: A dataset containing 26579 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parthenium hysterophorus, Argyrochaeta parviflora, Argyrochaeta bipinnatifida, Parthenium hysterophorus hysterophorus, Parthenium pinnatifidum, Echetrosis pentasperma, Parthenium hysterophorus hysterophorus, Parthenium lobatum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 26579 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021726-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bttqk
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana camara",
 "Country is Malaysia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 166 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021728-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4cvtu
title: Occurrence Download

description: A dataset containing 3037 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Amitermes laurensis (Mjöberg, 1920), Coptotermes acinaciformis (Froggatt, 1898))"
 ]
}

 The dataset includes 3037 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073515-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.