cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9911888
title: Photographed marine settlement panels

description: The archive consists of 31 folders of photographed marine organism settlement panels (16 cm × 16 cm) used for settlement panel surveys at sites in California (29 sites) and Australia (2 sites) in 2012-2015. The settlement panel system has painted strips forming a square collar for attaching the censused panel of interest and for dosing with a biocide-releasing paint, as described by Johnston and Webb (2000, <i>Biofouling</i> 15:165–173). Photos were taken at sites using digital camera at retrieval after submergence (around 6 weeks). Two doses of cuprous oxide paint, and undosed reference plates were used. A summary of survey data is provided in Mackie et al. (2018). A study of the relationship between coastal features including the density of artificial structure and background level of dissolved copper at field sites is provided in Susick et al. (2019)—this study considered non-dosed panels only.<br>Johnston EL, Webb J (2000) Novel techniques for field assessment of copper toxicity on fouling assemblages. Biofouling 15:165–173<br>Mackie J A, Bros-Seemann S, Susick K, Phan A, Scianni C (2018) Experimental assessment of the link between copper tolerance and invasion in fouling species. Report to the California State Lands Commission, Marine Invasive Species Program. Sacramento, California<br>Susick K., Scianni C., Mackie J A (2019) Artificial structure density predicts fouling community diversity on settlement panels. Biological Invasions, DOI: 10.1007/s10530-019-02088-5<br><br>
DOI: 10.6084/m9.figshare.9911918.v2
title: Analysis of spatiotemporal specificity of small RNAs regulating hPSC differentiation and beyond

description: We present a quantitative analysis of small RNA dynamics during the transition from hPSCs to the three germ layer lineages to identify spatiotemporal-specific small RNAs that may be involved in hPSC differentiation. To determine the degree of spatiotemporal specificity, we utilized two algorithms, namely normalized maximum timepoint specificity index (NMTSI) and across-tissue specificity index (ASI). NMTSI could identify spatiotemporal-specific small RNAs that go up or down at just one timepoint in a specific lineage. ASI could identify spatiotemporal-specific small RNAs that maintain high expression from intermediate timepoints to the terminal timepoint in a specific lineage. Beyond analyzing single small RNAs, we also quantified the spatiotemporal-specificity of microRNA families and observed their differential expression patterns in certain lineages. To clarify the regulatory effects of group miRNAs on cellular events during lineage differentiation, we performed a gene ontology (GO) analysis on the downstream targets of synergistically up- and downregulated microRNAs. To provide an integrated interface for researchers to access and browse our analysis results, we designed a web-based tool at https://keyminer.pythonanywhere.com/km/.
DOI: 10.6084/m9.figshare.9911852
title: Data_EcolAppl.xlsx

description: Dataset of the proportion of wind -and animal- dispersed seeds and species collected in 40 fragments of two mexican tropical rainforest regions and landscape variables associated with each site. FC, forest cover; PD, patch density; PI, mean inter-patch isolation distance; ED, edge density and MO, matrix openness.
DOI: 10.6084/m9.figshare.9911876
title: Genomes of subaerial Zygnematophyceae provide insights into land plant evolution

description: The assembly and annotation files of Spirogloea muscicola and Mesotaenium endlicherianum
DOI: 10.6084/m9.figshare.9911852.v1
title: Data_EcolAppl.xlsx

description: Dataset of the proportion of wind -and animal- dispersed seeds and species collected in 40 fragments of two mexican tropical rainforest regions and landscape variables associated with each site. FC, forest cover; PD, patch density; PI, mean inter-patch isolation distance; ED, edge density and MO, matrix openness.
DOI: 10.6084/m9.figshare.9911918.v1
title: Analysis of spatiotemporal specificity of small RNAs regulating hPSC differentiation and beyond

description: We present a quantitative analysis of small RNA dynamics during the transition from hPSCs to the three germ layer lineages to identify spatiotemporal-specific small RNAs that may be involved in hPSC differentiation. To determine the degree of spatiotemporal specificity, we utilized two algorithms, namely normalized maximum timepoint specificity index (NMTSI) and across-tissue specificity index (ASI). NMTSI could identify spatiotemporal-specific small RNAs that go up or down at just one timepoint in a specific lineage. ASI could identify spatiotemporal-specific small RNAs that maintain high expression from intermediate timepoints to the terminal timepoint in a specific lineage. Beyond analyzing single small RNAs, we also quantified the spatiotemporal-specificity of microRNA families and observed their differential expression patterns in certain lineages. To clarify the regulatory effects of group miRNAs on cellular events during lineage differentiation, we performed a gene ontology (GO) analysis on the downstream targets of synergistically up- and downregulated microRNAs. To provide an integrated interface for researchers to access and browse our analysis results, we designed a web-based tool at https://keyminer.pythonanywhere.com/km/.
DOI: 10.6084/m9.figshare.9911927.v1
title: Shuanggou peridotite (JGR-2019JB017552R).xlsx

description: The table includes whole-rock major, trace, PGE, and Re-Os isotope data of mantle peridotites (harzburgites and lherzolites) in the Shuanggou ophiolite, and clinopyroxene compositions in the lherzolites. Whole-rock major elements were analyzed using X-ray fluorescence (XRF) with &lt;5% at the Australian Laboratory Services P/L. Trace element compositions were measured using an inductively coupled plasma mass spectrometry (ICP-MS) at the State Key Laboratory of Ore Deposit Geochemistry, Chinese Academy of Sciences (SKLODG), following the procedure of Qi et al. (2000). In-situ analysis of clinopyroxenes in the lherzolites was analyzed by an Agilent 7900× ICP-MS (LA-ICP-MS) coupled with Coherent GeoLasPro 193-nm Laser Ablation system at the SKLODG following the experimental conditions and procedures from Liu et al. (2008). Whole-rock PGE data are measured an isotope dilution (ID)–ICP–MS at the SKLODG following the procedure of Qi et al. (2011). Whole-rock Re-Os isotope data are measured by a Isoprobe-T Mass Spectrometer and a Neptune multicollector (MC)-ICP-MS at the State Key Laboratory of Lithospheric Evolution, Institute of Geology and Geophysics, Chinese Academy of Sciences, following the method of Chu et al (2009). ReferenceChu, Z.Y., Wu, F.Y., Walker, R.J., Rudnick, R.L., Pitcher, L., Puchtel, I.S., Yang, Y.H., & Wilde, S.A. (2009). Temporal evolution of the lithospheric mantle beneath the eastern North China Craton. Journal of Petrology, 50, 1857-1898.Liu, Y., Hu, Z., Gao, S., Günther, D., Xu, J., Gao, C., & Chen, H. (2008). In situ analysis of major and trace elements of anhydrous minerals by LA-ICP-MS without applying an internal standard. Chemical Geology, 257(1-2), 34-43.Qi, L., Gao, J., Huang, X., Hu, J., Zhou, M. F., & Zhong, H. (2011). An improved digestion technique for determination of platinum group elements in geological samples. Journal of Analytical Atomic Spectrometry, 26(9), 1900-1904.Qi, L., Hu, J., & Gregoire, D. C. (2000). Determination of trace elements in granites by inductively coupled plasma mass spectrometry. Talanta, 51(3), 507-513.
DOI: 10.6084/m9.figshare.9911690
title: Supplementary Material - Betulinic Acid and Brosimine B Hybrid Derivatives as Potential Agents Against Female Cancers

description: Supplementary Material of the Research Article titled: Betulinic Acid and Brosimine B Hybrid Derivatives as Potential Agents Against Female Cancers - Representative chromatograms, spectra and purity analysis of the compounds 3-7
DOI: 10.6084/m9.figshare.9911690.v1
title: Supplementary Material - Betulinic Acid and Brosimine B Hybrid Derivatives as Potential Agents Against Female Cancers

description: Supplementary Material of the Research Article titled: Betulinic Acid and Brosimine B Hybrid Derivatives as Potential Agents Against Female Cancers - Representative chromatograms, spectra and purity analysis of the compounds 3-7
DOI: 10.6084/m9.figshare.9911537
title: Analyzed data Chapter 2

description: All necessary descriptions are in the data file.
DOI: 10.6084/m9.figshare.9911537.v1
title: Analyzed data Chapter 2

description: All necessary descriptions are in the data file.
DOI: 10.25377/sussex.9911288
title: Dataset for paper: The best wildflowers for wild bees

description: Data for paper published in the Journal of Insect Conservation Dec 2019. The dataset shows results of a survey conducted in 2018, where foraging visits by different wild bees on different species of wildflower were recorded to species level.<br><b>Abstract</b>Governmental agri-environment schemes (AES) aim to improve pollinator abundance and diversity on farmland by sowing wildflower seed mixes. These often contain high proportions of Fabaceae, particularly <i>Trifolium</i> (clovers), which are attractive to some bumblebee species, but not to most of the ~240 solitary bee species in the UK. Here we identify wildflowers that are attractive to a greater range of wild bee species. Forty-five wildflower species being farmed for commercial seed production on a single farm were surveyed for native bees. Bee walks were conducted through discrete wildflower areas from April until August in 2018. The results indicate that including a range of Apiaceae, Asteraceae, and Geraniaceae in seed mixes would cater for a wide diversity of bee species. A total of 14 wildflower species across nine families attracted 37 out of the 40 bee species recorded on the farm, and accounted for 99.7% of all visitations. Only two of these 14 species are included in current AES pollinator mixes. Unexpectedly, few visits were made by bumblebees to <i>Trifolium</i> spp. (0.5%), despite their being considered an important food source for bumblebees, while <i>Anthyllis vulneraria</i> and <i>Geranium pratense</i> were highly attractive. For solitary bees, <i>Crepis capillaris</i>, <i>Sinapsis arvensis</i>, <i>Convolvulus arvensis</i> and <i>Chaerophyllum temulum</i> were amongst the best performing species, none of which are usually included in sown flower mixes. We suggest that the standard ‘pollinator’ mixes used in AES might be updated to include some of these wildflower species, and trialled as seed mixes on farmland.
DOI: 10.17045/sthlmuni.9907991
title: Sunburst Arc Magellan/MagE observations

description: These are raw data files from the Magellan telescopes, MagE<br>spectrograph, that are used in Rivera-Thorsen et al. 2019 (Science). All individual science integrations are included, as well as all the calibration frames: blueflat, redflat, bias, ThAr lamps, order definition flats, and flux calibration stars. Directories include data from three observing runs; the directory name gives the month and year the observations were obtained. All observations are of the galaxy known as the "Sunburst Arc", discussed in Rivera-Thorsen et al. 2019. <br><br>The slit positions are as follows:- Img 1 / slit H-9 from August 2018<br>- Img 5 / slit "1" from May 2017<br>- Img 8 / slit H-2 from April 2018<br>- Img 10 / slit H-6 from April 2018 <br>- No LyC slit H-3 from April 2018<br><br><b>Viewing the data</b>: Data is stored in the <i>Flexible Image Transport System</i> (FITS) file format<sup>[1]</sup>, which is designed to store table or binary image data together with an ASCII header containing meta-data stored as a keyword-value pairs, of which some are mandatory and some are optional. <br>Multiple software applications exist which can view and analyze FITS files. We recommend either DS9<sup>[2]</sup>,<sup> </sup>QFitsView<sup>[3] </sup>or Ginga<sup>[4] </sup>packages<sup>, </sup>all of which are open source and freely available for both Windows, Mac OS X and GNU/Linux.<br><b>Unpacking</b>: The data is compressed in the .tar.gz format, which is natively supported on Mac OS X and GNU/Linux. On Windows, it can be opened with e.g. the 7-Zip software<sup>[5]</sup>.<br> -------------<br><sup></sup><sup>[1]</sup>: https://en.wikipedia.org/wiki/FITS<sup>[2]</sup>: http://ds9.si.edu/site/Home.html<sup>[3]</sup>: http://www.mpe.mpg.de/~ott/dpuser/qfitsview.html<sup>[4]</sup>: https://ejeschke.github.io/ginga/ <br><sup>[5]</sup>: https://www.7-zip.org/<br>
DOI: 10.25377/sussex.9911288.v1
title: Dataset for paper: The best wildflowers for wild bees

description: Data for paper published in the Journal of Insect Conservation Dec 2019. The dataset shows results of a survey conducted in 2018, where foraging visits by different wild bees on different species of wildflower were recorded to species level.<br><b>Abstract</b>Governmental agri-environment schemes (AES) aim to improve pollinator abundance and diversity on farmland by sowing wildflower seed mixes. These often contain high proportions of Fabaceae, particularly <i>Trifolium</i> (clovers), which are attractive to some bumblebee species, but not to most of the ~240 solitary bee species in the UK. Here we identify wildflowers that are attractive to a greater range of wild bee species. Forty-five wildflower species being farmed for commercial seed production on a single farm were surveyed for native bees. Bee walks were conducted through discrete wildflower areas from April until August in 2018. The results indicate that including a range of Apiaceae, Asteraceae, and Geraniaceae in seed mixes would cater for a wide diversity of bee species. A total of 14 wildflower species across nine families attracted 37 out of the 40 bee species recorded on the farm, and accounted for 99.7% of all visitations. Only two of these 14 species are included in current AES pollinator mixes. Unexpectedly, few visits were made by bumblebees to <i>Trifolium</i> spp. (0.5%), despite their being considered an important food source for bumblebees, while <i>Anthyllis vulneraria</i> and <i>Geranium pratense</i> were highly attractive. For solitary bees, <i>Crepis capillaris</i>, <i>Sinapsis arvensis</i>, <i>Convolvulus arvensis</i> and <i>Chaerophyllum temulum</i> were amongst the best performing species, none of which are usually included in sown flower mixes. We suggest that the standard ‘pollinator’ mixes used in AES might be updated to include some of these wildflower species, and trialled as seed mixes on farmland.
DOI: 10.6084/m9.figshare.9909104
title: Chemical weathering in a moraine at the ice sheet margin at Kangerlussuaq, western Greenland

description: Weathering caused by interaction between glacial sediments and water in exposed moraines needs to be studied to evaluate their possible effects on the global carbon cycle. In this study, moraine ponds, moraine porewaters, and till samples were collected at a moraine adjacent to the Greenland Ice Sheet at Kangerlussuaq. Scanning electron microscopy (SEM) studies of the till show limited evidence of silicate chemical weathering, but the moraine waters have substantial solute concentrations. δ<sup>34</sup>S<sub>SO4</sub> and δ<sup>18</sup>O<sub>SO4</sub> data indicate that the origin of dissolved sulfate is the oxidation of sulfides, in agreement with the SEM observations. The dissolved HCO<sub>3</sub><sup>−</sup>/SO<sub>4</sub><sup>2−</sup> molar ratios indicate an uneven balance between sulfuric and carbonic acid weathering; C-isotope data indicate that some of the CO<sub>2</sub> originates from organic carbon mineralization. Ion–ion plots provide evidence of carbonate weathering and of the formation of secondary gypsum and calcite through evaporation and (or) cryoconcentration. The <sup>87</sup>Sr/<sup>86</sup>Sr ratios in the waters correlate with the corresponding till samples, supporting the local origin of the dissolved strontium, which is higher in the waters than in the till due to the selective weathering of biotite. The data evidence a large degree of chemical weathering in moraines promoted by large rock–water ratios and by the hydraulic isolation created by the frozen till. The high <i>P</i><sub>CO2</sub> in the studied moraine waters indicates that they may represent a previously underestimated CO<sub>2</sub> source.
DOI: 10.17045/sthlmuni.9907991.v1
title: Sunburst Arc Magellan/MagE observations

description: These are raw data files from the Magellan telescopes, MagE<br>spectrograph, that are used in Rivera-Thorsen et al. 2019 (Science). All individual science integrations are included, as well as all the calibration frames: blueflat, redflat, bias, ThAr lamps, order definition flats, and flux calibration stars. Directories include data from three observing runs; the directory name gives the month and year the observations were obtained. All observations are of the galaxy known as the "Sunburst Arc", discussed in Rivera-Thorsen et al. 2019. <br><br>The slit positions are as follows:- Img 1 / slit H-9 from August 2018<br>- Img 5 / slit "1" from May 2017<br>- Img 8 / slit H-2 from April 2018<br>- Img 10 / slit H-6 from April 2018 <br>- No LyC slit H-3 from April 2018<br><br><b>Viewing the data</b>: Data is stored in the <i>Flexible Image Transport System</i> (FITS) file format<sup>[1]</sup>, which is designed to store table or binary image data together with an ASCII header containing meta-data stored as a keyword-value pairs, of which some are mandatory and some are optional. <br>Multiple software applications exist which can view and analyze FITS files. We recommend either DS9<sup>[2]</sup>,<sup> </sup>QFitsView<sup>[3] </sup>or Ginga<sup>[4] </sup>packages<sup>, </sup>all of which are open source and freely available for both Windows, Mac OS X and GNU/Linux.<br><b>Unpacking</b>: The data is compressed in the .tar.gz format, which is natively supported on Mac OS X and GNU/Linux. On Windows, it can be opened with e.g. the 7-Zip software<sup>[5]</sup>.<br> -------------<br><sup></sup><sup>[1]</sup>: https://en.wikipedia.org/wiki/FITS<sup>[2]</sup>: http://ds9.si.edu/site/Home.html<sup>[3]</sup>: http://www.mpe.mpg.de/~ott/dpuser/qfitsview.html<sup>[4]</sup>: https://ejeschke.github.io/ginga/ <br><sup>[5]</sup>: https://www.7-zip.org/<br>
DOI: 10.6084/m9.figshare.9909104.v1
title: Chemical weathering in a moraine at the ice sheet margin at Kangerlussuaq, western Greenland

description: Weathering caused by interaction between glacial sediments and water in exposed moraines needs to be studied to evaluate their possible effects on the global carbon cycle. In this study, moraine ponds, moraine porewaters, and till samples were collected at a moraine adjacent to the Greenland Ice Sheet at Kangerlussuaq. Scanning electron microscopy (SEM) studies of the till show limited evidence of silicate chemical weathering, but the moraine waters have substantial solute concentrations. δ<sup>34</sup>S<sub>SO4</sub> and δ<sup>18</sup>O<sub>SO4</sub> data indicate that the origin of dissolved sulfate is the oxidation of sulfides, in agreement with the SEM observations. The dissolved HCO<sub>3</sub><sup>−</sup>/SO<sub>4</sub><sup>2−</sup> molar ratios indicate an uneven balance between sulfuric and carbonic acid weathering; C-isotope data indicate that some of the CO<sub>2</sub> originates from organic carbon mineralization. Ion–ion plots provide evidence of carbonate weathering and of the formation of secondary gypsum and calcite through evaporation and (or) cryoconcentration. The <sup>87</sup>Sr/<sup>86</sup>Sr ratios in the waters correlate with the corresponding till samples, supporting the local origin of the dissolved strontium, which is higher in the waters than in the till due to the selective weathering of biotite. The data evidence a large degree of chemical weathering in moraines promoted by large rock–water ratios and by the hydraulic isolation created by the frozen till. The high <i>P</i><sub>CO2</sub> in the studied moraine waters indicates that they may represent a previously underestimated CO<sub>2</sub> source.
DOI: 10.6084/m9.figshare.9907895
title: Inhalation exposure to volatile organic compounds in the printing industry

description: This study reports on the occupational inhalation exposure to VOCs of workers in the Kuwaiti printing industry. Using the evacuated canister methodology, we targeted 72 VOCs in three printeries and compared the concentrations to previous reports and relevant occupational exposure levels (OELs). We found that recent efforts in the printing industry to reduce VOC usage had been successful, as concentrations of key hazardous VOCs were substantially lower than anticipated. On the other hand, nearly all target VOCs were found. Non-production areas were sampled along with the offset printing areas, another strength of this study, and revealed exposures to hazardous VOCs among administers and digital printer and CTP operators. Exposure to ototoxic VOCs amounted to 1–3% of the OEL, consisting mostly of ethylbenzene, which was likely in use in two of the study printeries. Exposure to carcinogenic or probably carcinogenic VOCs was 15–20% of the OEL at four locations across the three printeries, consisting mostly of vinyl chloride and benzyl chloride. Vinyl chloride VOC was partially sourced from outdoors, but was also likely used inside the study printeries. Interestingly, concentrations of vinyl chloride were similar in most sampling locations to that of CFC-114, a CFC banned by the Montreal Protocol and not commonly used as a refrigerant. This unexpected finding suggests further study is warranted to identify the use of these VOCs in printeries. Exposure to hazardous VOCs up to nearly 50% of the OEL, consisting largely of bromoform and vinyl chloride. Bromoform was found in all the study printeries, sourced partially from outdoor air. The higher concentrations found inside the study printeries likely resulted from the use of the desalinated water for washing. This finding raises of emissions from sources other than blanket washes, and inks, etc. adding to the total VOC load in printery indoor air. <i>Implications</i>: Results from this study indicate that efforts to reduce worker exposure to VOCs particularly dangerous to human health in recent years have been successful, but there is still much to be done to protect workers. Exposures to ototoxic and carcinogenic VOCs were identified, among both production and non-production workers. Unexpected findings included the apparent use in printing activities of the carcinogen vinyl chloride and CFC-114, banned under the Montreal Protocol. Observed lapses in safety procedures included failure to utilize ventilation systems and closing doors between work areas, indicating management and worker education should remain a priority.