cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11003966
title: LumpySkinDisease_DataHub

description: Welcome to the Lumpy Skin Disease Data Hub

Lumpy Skin Disease (LSD), or nodular skin disease, is a viral disease that mainly affects cattle, particularly cows. It is caused by a poxvirus of the family Poxviridae. The disease gets its name from the nodules or lumps that form on the skin of infected animals. Typical symptoms of LSD include the appearance of nodules on the skin, fever, eye discharge, swelling, and pain in the affected areas. In some cases, the disease can lead to reduced milk production, weight loss and impairment of the animal's general condition. The disease is spread primarily through direct contact between infected animals or through vectors such as mosquitoes and flies. It can have a significant impact on the livestock industry, causing economic losses due to reduced milk production, animal mortality and trade restrictions imposed on affected countries.Prevention of LSD relies mainly on isolation of infected animals, vaccination and control of vectors that transmit the disease.

Here you will find how to train a deep learning/machine learning model for LSD-related image classification.This repository is structured using the following folders:



code-   lumpy_multi_DL_bal.ipynb: This notebook contains code and documentation of a deep learning implementation for image classification for LSD disease. The wording "bal" suggests that the dataset used for training the model is balanced, that is, it contains a similar number of samples for each class.-   lumpy_multi_DL_imbal.ipynb: This notebook is similar to the previous one, but uses an unbalanced dataset for model training. This means that some classes may be overrepresented relative to others in the dataset.-   lumpy_multi_ML_bal: This notebook contains code and documentation for an implementation of machine learning algorithms for classification of LSD disease images. The wording "bal" suggests that the dataset used is balanced.-   lumpy_multi_ML_imbal: Similar to the previous point, but uses an unbalanced dataset for model training.

data-processed-   lumpy_balanced.zip: This folder contains a set of images related to LSD. The wording "balanced" suggests that the dataset has been balanced, i.e., it contains a similar number of samples for each class of interest, which are necessary for training and evaluation of machine learning or deep learning models.-   lumpy_unbalanced.zip: This folder contains a dataset similar to the first, but with the difference that the dataset is unbalanced. This means that some classes of interest may be overrepresented relative to others in the dataset. Within the archive, one may find the same types of data files present in the case of the balanced dataset.
DOI: 10.5281/zenodo.11003967
title: LumpySkinDisease_DataHub

description: Welcome to the Lumpy Skin Disease Data Hub

Lumpy Skin Disease (LSD), or nodular skin disease, is a viral disease that mainly affects cattle, particularly cows. It is caused by a poxvirus of the family Poxviridae. The disease gets its name from the nodules or lumps that form on the skin of infected animals. Typical symptoms of LSD include the appearance of nodules on the skin, fever, eye discharge, swelling, and pain in the affected areas. In some cases, the disease can lead to reduced milk production, weight loss and impairment of the animal's general condition. The disease is spread primarily through direct contact between infected animals or through vectors such as mosquitoes and flies. It can have a significant impact on the livestock industry, causing economic losses due to reduced milk production, animal mortality and trade restrictions imposed on affected countries.Prevention of LSD relies mainly on isolation of infected animals, vaccination and control of vectors that transmit the disease.

Here you will find how to train a deep learning/machine learning model for LSD-related image classification.This repository is structured using the following folders:



code-   lumpy_multi_DL_bal.ipynb: This notebook contains code and documentation of a deep learning implementation for image classification for LSD disease. The wording "bal" suggests that the dataset used for training the model is balanced, that is, it contains a similar number of samples for each class.-   lumpy_multi_DL_imbal.ipynb: This notebook is similar to the previous one, but uses an unbalanced dataset for model training. This means that some classes may be overrepresented relative to others in the dataset.-   lumpy_multi_ML_bal: This notebook contains code and documentation for an implementation of machine learning algorithms for classification of LSD disease images. The wording "bal" suggests that the dataset used is balanced.-   lumpy_multi_ML_imbal: Similar to the previous point, but uses an unbalanced dataset for model training.

data-processed-   lumpy_balanced.zip: This folder contains a set of images related to LSD. The wording "balanced" suggests that the dataset has been balanced, i.e., it contains a similar number of samples for each class of interest, which are necessary for training and evaluation of machine learning or deep learning models.-   lumpy_unbalanced.zip: This folder contains a dataset similar to the first, but with the difference that the dataset is unbalanced. This means that some classes of interest may be overrepresented relative to others in the dataset. Within the archive, one may find the same types of data files present in the case of the balanced dataset.
DOI: 10.5281/zenodo.11065521
title: Mimicking Natural Deterrent Strategies in Plants using Adhesive Spheres

description: With a continuous increase in world population and food production, chemical pesticide use is growing accordingly, yet unsustainably. As chemical pesticides are harmful to the environment and pests develop resistance, sustainable and effective pesticide alternatives are needed. Inspired by nature, we mimic one defense strategy of plants, glandular trichomes, to shift away from using chemical pesticides by moving towards a physical immobilization strategy via adhesive particles. Through a controlled oxidation of a biobased starting material, triglyceride oils, an adhesive material is created while monitoring the reactive intermediates. After being milled into particles, nanoindentation shows these particles to be adhesive even at low contact forces. A suspension of particles is then sprayed onto chrysanthemum leaves and found to be highly effective at immobilizing a target pest, thrips, \textit{Frankliniella occidentalis}. Typical of small arthropod pests, thrips cause crop damage predominantly through virus transfer, which is prevented by their immobilization. We show that through this scalable fabrication process, biosourced materials can be used to create an effective, sustainable physical pesticide.
DOI: 10.5281/zenodo.11065522
title: Mimicking Natural Deterrent Strategies in Plants using Adhesive Spheres

description: With a continuous increase in world population and food production, chemical pesticide use is growing accordingly, yet unsustainably. As chemical pesticides are harmful to the environment and pests develop resistance, sustainable and effective pesticide alternatives are needed. Inspired by nature, we mimic one defense strategy of plants, glandular trichomes, to shift away from using chemical pesticides by moving towards a physical immobilization strategy via adhesive particles. Through a controlled oxidation of a biobased starting material, triglyceride oils, an adhesive material is created while monitoring the reactive intermediates. After being milled into particles, nanoindentation shows these particles to be adhesive even at low contact forces. A suspension of particles is then sprayed onto chrysanthemum leaves and found to be highly effective at immobilizing a target pest, thrips, \textit{Frankliniella occidentalis}. Typical of small arthropod pests, thrips cause crop damage predominantly through virus transfer, which is prevented by their immobilization. We show that through this scalable fabrication process, biosourced materials can be used to create an effective, sustainable physical pesticide.
DOI: 10.15468/dl.hd3w5v
title: Occurrence Download

description: A dataset containing 6165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acrocephalus scirpaceus (Hermann, 1804)",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 6165 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037642-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vb76bj
title: Occurrence Download

description: A dataset containing 497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1060.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus pagoda Raf."
 ]
}

 The dataset includes 497 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025979-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtlnxc
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1998-2018",
 "TaxonKey is Galerina autumnalis (Peck) A.H.Sm. & Singer"
 ]
}

 The dataset includes 55 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006209-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jf2kqb
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Menonvillea minima Rollins"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037591-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsvk72
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Occurrence evidence",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Material citation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil"
 ]
 },
 "Continent is Africa",
 "Country is Benin",
 "TaxonKey is Ceratophyllaceae"
 ]
}

 The dataset includes 188 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0409720-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pu3jn8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hymenorchis caulina Schltr."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025866-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.60rz1b
title: Occurrence Download

description: A dataset containing 1492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mustela lutreola (Linnaeus, 1761)"
 ]
}

 The dataset includes 1492 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014277-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.magk9d
title: Occurrence Download

description: A dataset containing 766086 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piranga rubra (Linnaeus, 1758)"
 ]
}

 The dataset includes 766086 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126635-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36cfpn
title: Occurrence Download

description: A dataset containing 861 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Calendulauda burra (Bangs, 1930)"
 ]
}

 The dataset includes 861 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003987-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uv34pk
title: Occurrence Download

description: A dataset containing 2446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "GadmGid is DOM.11_1",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 2446 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001740-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttcszh
title: Occurrence Download

description: A dataset containing 11002 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dataset of Phenology of flora of mediterranean high-mountains meadows (Sierra Nevada)"
 ]
}

 The dataset includes 11002 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014278-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8qyqs
title: Occurrence Download

description: A dataset containing 319685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "OccurrenceStatus is Present",
 "Year 2020-2020"
 ]
}

 The dataset includes 319685 records from 323 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003973-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a9xn5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aplastodiscus ibirapitanga (Cruz, Pimenta & Silvano, 2003)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014278-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm2zob
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coptotermes formosanus Shiraki, 1909"
 ]
}

 The dataset includes 126 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007373-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnw2tt
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colchicum eucomoides (Jacq.) J.C.Manning & Vinn."
 ]
}

 The dataset includes 296 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004635-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.986h3r
title: Occurrence Download

description: A dataset containing 5058 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardaria draba (L.) Desv."
 ]
}

 The dataset includes 5058 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105261-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.prdyjq
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythroxylum ovalifolium Peyr."
 ]
}

 The dataset includes 306 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014278-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.859xvm
title: Occurrence Download

description: A dataset containing 21501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perlidae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than 2000"
 ]
}

 The dataset includes 21501 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132086-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43dbjm
title: Occurrence Download

description: A dataset containing 632899 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melanerpes uropygialis (S.F.Baird, 1854)"
 ]
}

 The dataset includes 632899 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004628-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evqh3f
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis rhabdolaemus (Duellman, 1978)"
 ]
}

 The dataset includes 173 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014278-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3ksu4
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mexico",
 "Country is Bermuda",
 "Country is Colombia",
 "Country is Panama",
 "Country is Belize",
 "Country is Cayman Islands",
 "Country is Nicaragua",
 "Country is Puerto Rico",
 "Country is Venezuela (Bolivarian Republic of)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Agaricia fragilis Dana, 1846"
 ]
}

 The dataset includes 150 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136435-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jua735
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola cinerea Boiss."
 ]
}

 The dataset includes 130 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136841-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpcnxe
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Stachys arvensis (L.) L."
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003986-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buvgws
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-131.13281 38.27269,-106.52344 -6.3153,-61.52344 6.3153,-55.89844 33.13755,-124.10156 46.55886,-131.13281 38.27269))",
 "HasCoordinate is true",
 "TaxonKey is Rhincodon typus Smith, 1828",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 167 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014279-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mk2sva
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.50884907817905 28.887227605256715,113.36547837882469 28.887227605256715,113.36547837882469 29.743856905902366,112.50884907817905 29.743856905902366,112.50884907817905 28.887227605256715))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anser albifrons (Scopoli, 1769)"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136840-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6p9aag
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prasophyllum caricetum D.L.Jones"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105262-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xz8umx
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Claytonia arctica Adam"
 ]
}

 The dataset includes 448 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003966-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwc99c
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acalypha tricholoba Müll.Arg."
 ]
}

 The dataset includes 23 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136842-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.