cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/xwws1-pxz53
title: MT310_xyl(+)_AuCl2uM(+)

description: Raw data files of MT310_xyl(+)_AuCl2uM(+)
description: <strong>Tilt Series Date:</strong> 2009-06-14</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; Cells cultured and treated by Zhuo Li; Data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MT310 cells were induced with xylose and treated with 2 uM AuCl for 20 hours.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-14-10/rawdata/</p>09jun14a_Au2_010.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-14-10/rawdata/09jun14a_Au2_010.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun14a_Au2_010_part.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-14-10/3dimage_5063/09jun14a_Au2_010_part.rec"
        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_029.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-14-10/rawdata/09jun09a_Au50uma_029.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun09a_Au50uma_029_part.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-14-10/3dimage_5123/09jun09a_Au50uma_029_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vtsqt-vc043
title: Vibrio Yi-Wei style

description: Strain MKW1383 grown in conditions Yi-Wei uses for Bdellovibrio predation
description: <strong>Tilt Series Date:</strong> 2014-02-21</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown 24 hours in LB at 30C; diluted 150 µL into 2 mL Ca-HEPES buffer and grew at 30C for another 16 hours</p>
  aba2014-02-21-17_slicer3719.jpg: Vibrio cell with 3 extra flagelar motors? aba2014-02-21-17_slicer3720.jpg: cytoplasmic array aba2014-02-21-17_slicer3721.jpg: cytoplasmic array right next to polr array
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-17/rawdata/</p>VibrioYiWeiStyle0017.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-17/rawdata/VibrioYiWeiStyle0017.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibrioYiWeiStyle0017.rec,  Reconstruction (Pixel Size 0.0 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-17/3dimage_46706/VibrioYiWeiStyle0017.rec"
        > <i class="download icon"></i> Download </a></p>

        VibrioYiWeiStyle0017SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-17/3dimage_46707/VibrioYiWeiStyle0017SIRT.rec"
        > <i class="download icon"></i> Download </a></p>

        VibrioYiWeiStyle0017SIRTrot.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-17/3dimage_46708/VibrioYiWeiStyle0017SIRTrot.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/thrz3-v6t07
title: Vibrio Yi-Wei style

description: Strain MKW1383 grown in conditions Yi-Wei uses for Bdellovibrio predation
description: <strong>Tilt Series Date:</strong> 2014-02-21</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown 24 hours in LB at 30C; diluted 150 µL into 2 mL Ca-HEPES buffer and grew at 30C for another 16 hours</p>
  aba2014-02-21-15_slicer3715.jpg: long (at the pole) and short (subpolar) membrane bound chemoreceptor arrays aba2014-02-21-15_slicer3716.jpg: extra layer below long membrane bound chemoreceptor array
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-15/rawdata/</p>VibrioYiWeiStyle0015.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-15/rawdata/VibrioYiWeiStyle0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibrioYiWeiStyle0015.rec,  Reconstruction (Pixel Size 0.0 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-15/3dimage_46701/VibrioYiWeiStyle0015.rec"
        > <i class="download icon"></i> Download </a></p>

        VibrioYiWeiStyle0015SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-15/3dimage_46702/VibrioYiWeiStyle0015SIRT.rec"
        > <i class="download icon"></i> Download </a></p>

        VibrioYiWeiStyle0015SIRTrot.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-21-15/3dimage_46703/VibrioYiWeiStyle0015SIRTrot.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dxygh-st941
title: Calreticulin-YFP

description: Correlated light electron microscopy (CLEM) of calreticulin-YFP. The aim of the experiment was to determine whether ribosome associated granules contained calreticulin.
description: <strong>Tilt Series Date:</strong> 2014-10-22</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> INS-1E Pancreatic Cells expressing Calreticulin-YFP</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD and Raptor</p>
<strong>Collaborators and Roles:</strong> Zach Freidberg</p>
<strong>Purification / Growth Conditions / Treatment:</strong> INS-1E cells grown on gold finder grids and plunge frozen using the vitrobot III blotted both sides pressure setting 1. Grids coated with fibronectin and 200 nm red fluorescent beads F8763 added to grids before freezing.</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-10/rawdata/</p>tomography3arrow.mrc,  Tilt Series (Pixel Size 6.0 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-10/rawdata/tomography3arrow.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomography3arrow.rec,  Reconstruction (Pixel Size 24.0 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-10/3dimage_47533/tomography3arrow.rec"
        > <i class="download icon"></i> Download </a></p>

        tomography3arrowstack_full.rec,  Reconstruction (Pixel Size 24.67 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-10/3dimage_48775/tomography3arrowstack_full.rec"
        > <i class="download icon"></i> Download </a></p>

        tomography3arrow_full.rec,  Reconstruction (Pixel Size 24.67 nm), 666.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2014-10-22-10/3dimage_55713/tomography3arrow_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tf8e5-76m95
title: Hyphomonas AR46

description: ParA-like protein, HNE0708 knockout
description: <strong>Tilt Series Date:</strong> 2012-09-07</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown overnight in Marine Broth (MB) medium at 30 degrees without antibiotics. OD600=0.6</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 nm BSA treated gold. -3 offset, 4 sec blot time, no drain. Ethane/propane mix.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-07-7/rawdata/</p>20120907_AR46_10007.mrc,  Tilt Series (Pixel Size 1.0 nm), 925.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-07-7/rawdata/20120907_AR46_10007.mrc"
        > <i class="download icon"></i> Download </a></p>

        20120907_AR46_10007_full.rec,  Reconstruction (Pixel Size 2.0 nm), 262.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2012-09-07-7/3dimage_20677/20120907_AR46_10007_full.rec"
        > <i class="download icon"></i> Download </a></p>

        ycw2012-09-07-7_slicer16455.png,  REZ .  faint flow lines .  -andrew, 706.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/ycw2012-09-07-7_slicer16455.png"
        > <i class="download icon"></i> Download </a></p>

        ycw2012-09-07-7_slicer16453.png,  REZ .  faint flow lines, 881.8 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/Caps/ycw2012-09-07-7_slicer16453.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fqsbt-6tj30
title: Caulobacter crescentus

description: CB15N strain 1208 CreS deletion. 1 of 5, CreS deletion + A22. stalked cell; thick partitions in stalk; no obvious filaments
description: <strong>Tilt Series Date:</strong> 2006-04-06</p>
<strong>Data Taken By:</strong> Prabha Dias</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 0.7°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> specimen prep: Ariane Briegel; data collection & processing: D. Prabha Dias</p>
<strong>Purification / Growth Conditions / Treatment:</strong> standard PYE media (Shapiro, Brun, etc. recipe);  cultured in 50ml flask; exponential phase; A22 added to depolymerize MreB</p>
<strong>Sample Preparation:</strong> box 519, grid 1; see Ariane Briegel's notes</p>
  SAVE_pseudcryst01.jpg: file associated to 3D Image #291 pdd2006-04-06-1_slicer10033.jpg: Caulobacter crescentus .  filament pdd2006-04-06-1_slicer10034.jpg: Caulobacter crescentus .  s-layer
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2006-04-06-1/rawdata/</p>cc1208_06Apr06e150t01.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2006-04-06-1/rawdata/cc1208_06Apr06e150t01.mrc"
        > <i class="download icon"></i> Download </a></p>

        06Apr06t01bn_full.rec,  Reconstruction (Pixel Size 2.4 nm), 796.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2006-04-06-1/3dimage_291/06Apr06t01bn_full.rec"
        > <i class="download icon"></i> Download </a></p>

        SAVE_pseudcryst01.tif,  file associated to 3D Image #291, 4.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2006-04-06-1/file_661/SAVE_pseudcryst01.tif"
        > <i class="download icon"></i> Download </a></p>

        06Apr06t01.mov,  file associated to 3D Image #291, 318.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2006-04-06-1/file_662/06Apr06t01.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.bsf7wu
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudosuccinea columella",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 75 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033106-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/4gxbd-d6619
title: Hn limited in thiosulfate for 4h

description: H. neapolitanus cell h2 limited in thiosulfate for 4 hours
description: <strong>Tilt Series Date:</strong> 2006-05-18</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in thiosulfate for 4 hours</p>
  civ2006-05-18-4_slicer7191.jpg: periplasmic vesicle civ2006-05-18-4_slicer7192.jpg: filament civ2006-05-18-4_slicer7193.jpg: periplasmic vesicle civ2006-05-18-4_slicer7195.jpg: periplasmic vesicle civ2006-05-18-4_slicer7196.jpg: peptidoglycan civ2006-05-18-4_slicer7198.jpg: periplasmic vesicle civ2006-05-18-4_slicer7200.jpg: filament civ2006-05-18-4_slicer9472.jpg: periplasmic vesicle row .  Halothiobacillus neapolitanus   c2
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-18-4/rawdata/</p>h2_Hn_4h_140e_15um_may18_06.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-18-4/rawdata/h2_Hn_4h_140e_15um_may18_06.mrc"
        > <i class="download icon"></i> Download </a></p>

        h2_4h_140e_15um.rec,  Reconstruction (Pixel Size 1.2 nm), 487.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-18-4/3dimage_4238/h2_4h_140e_15um.rec"
        > <i class="download icon"></i> Download </a></p>

        h2_4h_140e_15um_ali.mov,  file associated to 3D Image #4238, 15.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-18-4/file_2337/h2_4h_140e_15um_ali.mov"
        > <i class="download icon"></i> Download </a></p>

        h2_4h_140e_15um_rec_ave10.mov,  file associated to 3D Image #4238, 31.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-18-4/file_2338/h2_4h_140e_15um_rec_ave10.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/edshy-pnh53
title: C. crescentus with ParM plasmid

description: C.crescentus.  The rest of the files are in ~/Images/050608 or on DVD.
description: <strong>Tilt Series Date:</strong> 2005-06-08</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 0.7°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> R. Jensen probably gave me the ParM plasmid which was used to transform the Caulobacter, or the other Dane; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were probably grown to exp. phase, then probably centrifuged. They had the ParM plasmid therein.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-06-08-4/rawdata/</p>C5_S424G2_7s10d120e18k.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-06-08-4/rawdata/C5_S424G2_7s10d120e18k.mrc"
        > <i class="download icon"></i> Download </a></p>

        C5B2rec.mrc,  Reconstruction (Pixel Size 0.0 nm), 416.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-06-08-4/3dimage_163/C5B2rec.mrc"
        > <i class="download icon"></i> Download </a></p>

        C5_afterview.dm3,  * associated to rawdata, 8.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-06-08-4/file_229/C5_afterview.dm3"
        > <i class="download icon"></i> Download </a></p>

        C5_preview.dm3,  * associated to rawdata, 8.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-06-08-4/file_230/C5_preview.dm3"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wa3vt-71s51
title: Rhodopseudomonas palustrus

description: Fe-metabolizing bacterium that makes parallel membrane sheets for photosynthesis.  Membrane topology is the primary interest.
description: <strong>Tilt Series Date:</strong> 2007-10-04</p>
<strong>Data Taken By:</strong> Bill Tivol</p>
<strong>Species / Specimen:</strong> Rhodopseudomonas palustris</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1 deg°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Diane Newman, PI, Lars Dietrich, Postdoc, Lars gave me the specimens</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in FEM medium +10% acetate at 30 deg C in bright light.</p>
<strong>Sample Preparation:</strong> quantifoil, 10 nm gold, 100% humidity</p>
  connection1tomo6.jpg: connection between membrane sacks
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/btf2007-10-04-1/rawdata/</p>Rp4Oct07_06.mrc,  Tilt Series (Pixel Size 0.625 nm), 1.1 GB  
        
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        Rp4Oct07_06_full.rec,  Reconstruction (Pixel Size 1.25 nm), 1.3 GB  
        
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        Rp4Oct07_06.rec,  Reconstruction (Pixel Size 1.25 nm), 479.2 MB  
        
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        Rp4Oct07_06fil.rec,  Reconstruction (Pixel Size 1.25 nm) median filtered, 479.2 MB  
        
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