cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7588838
title: Psoas Cross-Sectional Measurements Using Manual CT Segmentation before and after Endovascular Aortic Repair (EVAR).

description: Monti CB, Righini P, Bonanno MC, Capra D, Mazzaccaro D, Giannetta M, Nicolino GM, Nano G, Sardanelli F, Marrocco-Trischitta MM, Secchi F. Psoas Cross-Sectional Measurements Using Manual CT Segmentation before and after Endovascular Aortic Repair (EVAR). J Clin Med. 2022 Jul 12;11(14):4023. doi: 10.3390/jcm11144023. PMID: 35887786; PMCID: PMC9325160. Abstract Sarcopenia has been associated with an increased incidence of adverse outcomes, including higher mortality, after endovascular aortic repair (EVAR). We aim to use computed tomography (CT) to quantify changes in total psoas muscles area (PMA) and psoas muscle density (PMD) after EVAR, and to evaluate the reproducibility of both measurements. PMA and PMD were assessed via manual segmentation of the psoas muscle on pre- and post-operative CT scans belonging to consecutive patients who underwent EVAR. Wilcoxon test was used to compare PMA and PMD before and after EVAR, and inter- and intra-reader agreements of both methods were evaluated through Bland-Altman analysis. A total of 50 patients, 42 of them males (84%), were included in the study. PMA changes from 1243 mm<sup>2</sup> (1006-1445 mm<sup>2</sup>) to 1102 mm<sup>2</sup> (IQR 937-1331 mm<sup>2</sup>), after EVAR (<em>p</em> &lt; 0.001). PMD did not vary between pre-EVAR (33 HU, IQR 26.5-38.7 HU) and post-EVAR (32 HU, IQR 26-37 HU, <em>p</em> = 0.630). At inter-reader Bland-Altman analysis, PMA showed a bias of 64.0 mm<sup>2</sup> and a coefficient of repeatability (CoR) of 359.2 mm<sup>2</sup>, whereas PMD showed a bias of -2.43 HU and a CoR of 6.19 HU. At intra-reader Bland-Altman analysis, PMA showed a bias of -81.1 mm<sup>2</sup> and a CoR of 394.6 mm<sup>2</sup>, whereas PMD showed a bias of 1.41 HU and a CoR of 6.36 HU. In conclusion, PMA decreases after EVAR. A good intra and inter-reader reproducibility was observed for both PMA and PMD. We thus propose to use PMA during the follow-up of patients who underwent EVAR to monitor muscle depletion after surgery.
DOI: 10.5258/soton/d2503
title: Dataset supporting the article "Particle finder: A simple particle detection tool for continuous-flow systems"

description: This dataset supports the publication in the journal Microfluidics and Nanofluidics entitled "Particle finder: A simple particle detection tool for continuous-flow systems". This dataset contains the original video file used to elaborate section 3 in the manuscript. We also include the installers of the Particle Finder software and a video tutorial as an introductory guide to the software, where we analyse a video which is also included in this dataset. There is also a zip file named Original_Figures_paper.zip that contains the original images from paper as PDF files.
DOI: 10.5519/qd.c27nirra
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (268869 records)
DOI: 10.5519/qd.lwov9qir
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (13034 records)
DOI: 10.5519/qd.m42m0epz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (54 records)
DOI: 10.14278/rodare.1710
title: Data 4 paper: 3D quantitative mineral characterization of particles using X-ray computed tomography

description: Grey-scale data for the two particulate samples: AllSizes (every particles &lt;1 mm) and &gt;710 (particle sizes 0.71-1 mm). 710 Grey is 16 bit AllSizes Grey is 8bit AllSizes Particles is binary
DOI: 10.14278/rodare.1709
title: Data 4 paper: 3D quantitative mineral characterization of particles using X-ray computed tomography

description: Grey-scale data for the two particulate samples: AllSizes (every particles &lt;1 mm) and &gt;710 (particle sizes 0.71-1 mm). 710 Grey is 16 bit AllSizes Grey is 8bit AllSizes Particles is binary
DOI: 10.5281/zenodo.7588874
title: Exploring metrics for the characterization of the cerebral autoregulation during head-up tilt and propofol general anesthesia.

description: Bari V, Barbarossa L, Gelpi F, Cairo B, De Maria B, Tonon D, Rossato G, Faes L, Ranucci M, Barbieri R, Porta A. Exploring metrics for the characterization of the cerebral autoregulation during head-up tilt and propofol general anesthesia. Auton Neurosci. 2022 Nov;242:103011. doi: 10.1016/j.autneu.2022.103011. Epub 2022 Jul 8. PMID: 35834916. <strong>Abstract</strong> Techniques grounded on the simultaneous utilization of Tiecks' second order differential equations and spontaneous variability of mean arterial pressure (MAP) and mean cerebral blood flow velocity (MCBFV), recorded from middle cerebral arteries through a transcranial Doppler device, provide a characterization of cerebral autoregulation (CA) via the autoregulation index (ARI). These methods exploit two metrics for comparing the measured MCBFV series with the version predicted by Tiecks' model: normalized mean square prediction error (NMSPE) and normalized correlation ρ. The aim of this study is to assess the two metrics for ARI computation in 13 healthy subjects (age: 27 ± 8 yrs., 5 males) at rest in supine position (REST) and during 60° head-up tilt (HUT) and in 19 patients (age: 64 ± 8 yrs., all males), scheduled for coronary artery bypass grafting, before (PRE) and after (POST) propofol general anesthesia induction. Analyses were carried out over the original MAP and MCBFV pairs and surrogate unmatched couples built individually via time-shifting procedure. We found that: i) NMSPE and ρ metrics exhibited similar performances in passing individual surrogate test; ii) the two metrics could lead to different ARI estimates; iii) CA was not different during HUT or POST compared to baseline and this conclusion held regardless of the technique and metric for ARI estimation. Results suggest a limited impact of the sympathetic control on CA.
DOI: 10.5281/zenodo.7588873
title: Exploring metrics for the characterization of the cerebral autoregulation during head-up tilt and propofol general anesthesia.

description: Bari V, Barbarossa L, Gelpi F, Cairo B, De Maria B, Tonon D, Rossato G, Faes L, Ranucci M, Barbieri R, Porta A. Exploring metrics for the characterization of the cerebral autoregulation during head-up tilt and propofol general anesthesia. Auton Neurosci. 2022 Nov;242:103011. doi: 10.1016/j.autneu.2022.103011. Epub 2022 Jul 8. PMID: 35834916. <strong>Abstract</strong> Techniques grounded on the simultaneous utilization of Tiecks' second order differential equations and spontaneous variability of mean arterial pressure (MAP) and mean cerebral blood flow velocity (MCBFV), recorded from middle cerebral arteries through a transcranial Doppler device, provide a characterization of cerebral autoregulation (CA) via the autoregulation index (ARI). These methods exploit two metrics for comparing the measured MCBFV series with the version predicted by Tiecks' model: normalized mean square prediction error (NMSPE) and normalized correlation ρ. The aim of this study is to assess the two metrics for ARI computation in 13 healthy subjects (age: 27 ± 8 yrs., 5 males) at rest in supine position (REST) and during 60° head-up tilt (HUT) and in 19 patients (age: 64 ± 8 yrs., all males), scheduled for coronary artery bypass grafting, before (PRE) and after (POST) propofol general anesthesia induction. Analyses were carried out over the original MAP and MCBFV pairs and surrogate unmatched couples built individually via time-shifting procedure. We found that: i) NMSPE and ρ metrics exhibited similar performances in passing individual surrogate test; ii) the two metrics could lead to different ARI estimates; iii) CA was not different during HUT or POST compared to baseline and this conclusion held regardless of the technique and metric for ARI estimation. Results suggest a limited impact of the sympathetic control on CA.
DOI: 10.17632/33bbncb5h4.1
title: Simulation of the Propagation and Effects of Gravity Waves Generated by Tonga Volcano Eruption in the Thermosphere and Ionosphere Using Nested-Grid TIEGCM

description: Data for each figure. Plotting programs are also included.
DOI: 10.17632/sz5kk7p48w.1
title: An affinity-directed phosphatase (AdPhosphatase) system for targeted protein dephosphorylation. Simpson et al.

description: Unprocessed Western blot and immunofluorescence data for each figure of manuscript "An affinity-directed phosphatase (AdPhosphatase) system for targeted protein dephosphorylation".
DOI: 10.17632/pk9vtvzzkx.2
title: data

description: These datasets have taken from kaggle.com and we perform sentiment analysis on these three dataset. It shows several customers openion as sentence and level(positive or negative comment).
DOI: 10.17632/ztyct77cdd.1
title: Mathematical Simulations PMTUD Dataset

description: This mathematical data is related to the research work on mathematical analysis of Path MTU Discovery in new generation networks. Hence it provides the research results and the outcomes.
DOI: 10.17632/h2th44bw8z.1
title: MUC1, MUC4, Stn, TN dataset in cervical cancer 

description: The photomicrographs are images of immunohistochemically stained cervical cancer and lymph node metastases. The specimens were prospectively collected from patients enrolled in the Gynecologic Oncology Group (GOG) clinical trial GOG0221: Glycoprotein and glycan profiling in patients with locally advanced cervical cancer (Stage IB2, IIA > 4 cm, IIB to IVA) undergoing pelvic and para-aortic (abdominal) lymphadenectomy (clinicaltrials.gov:NCT00460356). Sections of the specimens immunohistochemically stained for mucin 1 and 4 proteins (MUC1 and MUC4, respectively) and Sialyl Tn (STn) and Tn antigens were reviewed by experienced gynecologic pathologists and areas of interest for photomicrography were selected by the first two authors of this brief (R.R. and R.C.). Representative images for all immunohistochemical stains showing their expression patterns as well as positive and negative controls were shown and described.
DOI: 10.17632/r888nvzppr.1
title: Sexual Abuse of Girl Student through Social Media: A Study in India

description: The aim of the study is to find out the sexual abuse of girl students on social media in the Indian context. A social media-based survey was conducted for the study. Using a respondent-driven convenient sampling method, 568 girl students (Aged≥ 15 to 27) studying in different grades i. e. secondary (9th to 12th grade), undergraduate, and postgraduate, residing in the state of West Bengal, representing metropolitan, urban-municipal and rural areas,  have participated in this survey. A scale developed by researchers was used to capture the girl students’ experience of sexual exploitation while they are using social media platforms. The scale consisted of 9 structured “Yes” and “No” response items. The idea of some items was borrowed from the previous study by Terwilliger (2021). When anyone was “yes” in her response then again, the respondent got the further a counter-question whether she responded or provided information against their appeal. The final section comprised 19 items which were adapted from Schenk et al. (2008). It was a five-point Likert-type scale where the options were “never”, “once or twice”, “sometimes”, “often”, and “most of the time”.
DOI: 10.17632/bhwjts8c58.2
title: Determination of the supramolecular arrangement of Dinaphtho[2,3-b:2',3'-f]thieno[3,2-b]thiophene films fabricated by Physical Vapour Deposition and possible implications for electronic devices

description: raw data
DOI: 10.34740/kaggle/dsv/4924811
title: Job Survey
DOI: 10.17632/fgwftw936z.1
title: Nine-years effect of harvesting and mechanical site preparation on bryophyte decomposition and carbon stocks in a boreal forested peatland

description: The data and code were used to assess the nine-year effects of silvicultural treatments of different intensity (harvesting and harvesting followed by mechanical site preparation) on the decomposition rates of common bryophyte’s species and on soil C stocks.  The study area is located in the Clay Belt region of northwestern Quebec (Canada). There are two databases related to: (1) decompostion rate and (2) to soil C stocks. The first database contains 487 mass loss percent of three bryophytes species (Pleurozium schreberi, Sphagnum capillifolium, and Sphagnum fuscum) for one and two growing seasons (i.e., 4 months and 16 months, June to October 2019 and June 2019 to October 2020) and some micro-environmental variables. the microenvironmental variables involved, the Air and soil temperature, soil layer types (fibric, mesic, humic and mineral), water table fluctuations, organic layer thickness and canopy openness. The other database concerned soil carbon stock. There are 2 codes: The first code regroups the analysis on decomposition, Principal component analysis and C stoks analysis. Another code on common variables declaration on  data of decay rate.
DOI: 10.17632/cgrphxc976.2
title: Talker-specificity and token-specificity in recognition memory

description: Data and analysis script associated with the manuscript, "Talker-specificity and token-specificity in recognition memory" by William Clapp, Charlotte Vaughn, Simon Todd, & Meghan Sumner. 

Raw data is in the files `Experiment1.csv` and `Experiment2.csv`. The file `analysis.R` contains all steps necessary to reproduce statistical analyses. Detailed model summaries and post-hoc EMM tests are available as TXT files in the `model summaries` folder.
DOI: 10.17632/bc2jfr7dv9.1
title: Data for "Deep learning approach for steep and flat corneal curvature prediction using fundus photography"

description: Corneal curvature is one of the important factors consisting of refractive errors and related to several pathological conditions of the cornea. Fundus photography is the widely used tool to examine the eyes in the current healthcare setting worldwide. The aim of this study is to develop a deep learning model based on fundus photography to predict corneal curvature by categorizing the steep, regular, and flat cornea groups.

We analyzed the preoperative measurements of healthy participants without previous surgical history. The participants intended to undergo refractive surgery at the B&VIIT Eye Center from January 2020 to March 2020. participants did not wear contact lenses that could affect corneal curvature four days before the visit for accurate preoperative examination. We retrospectively collected preoperative keratometry measurement and FP that were used to develop a deep learning model. 

FP of the posterior pole was collected using 3-dimensional retinal imaging device (Topcon 3D OCT‐1 Maestro, Tokyo, Japan). The corneal curvature (shape) was evaluated based on corneal tomography from a Pentacam Scheimpflug system (Oculus Optikgeräte GmbH, Wetzlar, Germany). We used mean anterior keratometry (K) value (an average of the flat [K1] and steep [K2] keratometry values) as a representative value for corneal curvature. The K values of 45 D or more were classified as the sharp cornea group. If the K values were less than 42 D, they were classified as the flat cornea group (Figure 3). The rest were classified into the regular cornea group.

This dataset included the fundus photograph samples of this study. Fifty images per each group were uploaded.
DOI: 10.5281/zenodo.7588938
title: Interaction

description: Database Interaction study
DOI: 10.5281/zenodo.7588937
title: Interaction

description: Database Interaction study
DOI: 10.17632/v8hnjy933n.2
title: Screening Algorithm for Late Diagnosed Cystic Fibrosis

description: Attached are two data files for the Data Repository: the Development Database and the Validation Database.  There were 174 study patients in the study.  The two databases were created by randomly assigning 87 patients to a development cohort and 87 patients to a validation cohort. The data for the development cohort was used in estimating the parameters of the logistic regression models on which the screening algorithm is based.  The data for the validation cohort was used in comparing the predictive accuracy of the screening algorithm in referring patients for CF testing with that of clinical judgment.
DOI: 10.17632/gjpvwxj7fw.1
title: Soil seedbank development of smoke-responsive plant species in a 23-year restoration chronosequence and implications for resilience to fire

description: These data refer to the paper "Soil seedbank development of smoke-responsive plant species in a 23-year restoration chronosequence and implications for resilience to fire" by Cowan et al., (2023). Across a 23-year chronosequence restored after sand mining, smoke was applied to the species rich soil seedbank (SSB) to trigger germination and test how the SSB develops in Banksia woodlands. We measured counts by species in three 1x4m smoked plots, and three 1xm control (unsmoked) plots. Aboveground vegetation was assessed in five 4x4m plots, each with two 0.7m microplots.
DOI: 10.17632/dz6dnzbtpv.4
title: metabolic reprogramming in PMOP

description: 1.Morphological data
Micro-CT and morphological data in SHAM, OVX and OVX+ICA group as well as in OVX, OVX+low-dosage DCA and OVX+low-dosage DCA group.

2. The Rat Glucose Metabolism RT² Profiler PCR Array
84 glucose metabolism related genes were detected in SHAM, OVX and OVX+ICA groups.

3. Immunoblotting raw pictures
For detections in SHAM, OVX and OVX+ICA groups, the sequences in the band is SHAM, OVX and ICA+OVX from left to right.For detections in cells, the sequences in the band is siCON, siPDK1, DCA and ICA from left to right. For detections in DCA-interventioned OVX group, the sequences in the band is OVX, low-dosage DCA and high-dosage DCA from left to right. For PDK1 enzymatic activity detection, the sequences in the band was phosphorylated PDHA Ser232 at 0, 5, 10 minutes.

4. Immunofluorescence pictures
Immunofluorescences of PDHA and PDHA pSer232 were performed on paraffin cuts in SHAM, OVX and OVX+ICA group, reconfirming the upregulation  of PDHA pSer232 in OVX group.
The co-labelled PDHA pSer232 with osteoclast marker and osteoblast marker respectively indicated the the upregulation of PDHA pSer232 mainly existed in osteoclasts.

5.qPCR raw data
Osteoclast marker genes (Nfatc1, Tracp, Oscar, Mmp9 and Cathepsin K ) significantly decreased after PDK1 knockdown, DCA and ICA administration, indicating that DCA and ICA both hindered osteoclast differentiation. 

6.TRAP staining pictures
The numbers of TRAP positive osteoclasts dramatically diminished after PDK1 knockdown, DCA and ICA administration.
DOI: 10.17632/rfhy667ktc.2
title: METTL14 inhibits malignant progression of oral squamous cell carcinoma by targeting autophagy-related gene RB1CC1 in an m6A-IGF2BP2-dependent manner

description: The original data that supports the research article: "METTL14 inhibits malignant progression of oral squamous cell carcinoma by targeting autophagy-related gene RB1CC1 in an m6A-IGF2BP2-dependent manner".
DOI: 10.17632/yyx8pj6ncv.1
title: PROGRAM PELATIHAN KREATIVITAS MAMPU MEMEDIASI PENGARUH FAKTOR INTRINSIK DAN FAKTOR EKSTRINSIK TERHADAP MINAT DALAM BERWIRAUSAHA (STUDI PADA MAMA-MAMA ASLI PAPUA WARGA KELURAHAN DOME TIMUR DISTRIK SORONG KEPULAUAN)

description: Penelitian ini bertujuan untuk menganalisis program pelatihan kreatifitas mampu memediasi pengaruh faktor intrinsik dan faktor ekstrinsik terhadap minat dalam berwirausaha. Mama-mama asli papua warga kelurahan Doom Timur distrik Sorong Kepulauan,  kota Sorong yang telah mengikuti kegiatan pelatihan kreatifitas sebanyak 34 orang. Teknik pengambilan sampel 
dengan metode sampling jenuh dimana semua populasi menjadi sampel. Untuk menjawab masalah penelitian dan pengujian hipotesis maka digunakan teknik analisis Partial Least Square (PLS). Hasil analisis menunjukkan bahwa: faktor intrinsik tidak berpengaruh positif signifikan terhadap minat dalam berwirausaha, faktor ekstrinsik tidak berpengaruh positif signifikan terhadap minat dalam berwirausaha, pelatihan kreatifitas berpengaruh positif signifikan terhadap minat dalam berwirausaha, faktor intrinsik berpengaruh positif signifikan terhadap pelatihan kreatifitas, faktor ekstrinsik tidak berpengaruh positif signifikan terhadap pelatihan kreatifitas, pelatihan kreatifitas secara signifikan memediasi pengaruh faktor intrinsik terhadap minat dalam berwirausaha dan pelatihan kreatifitas tidak signifikan memediasi pengaruh faktor ekstrinsik terhadap minat dalam berwirausaha
DOI: 10.17632/9z336f9ngn.1
title: LINF_350031200

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.25403/upresearchdata.20292564.v1
title: Deladenus siricidicola genes involved in parasitism and host immunomodulation

description: This dataset include the listed multiple files. Amino acid sequences of the 23 curated <em>D. siricidicola</em> genes potentially involved in parasitism and host immunomodulation.The files for the sequencing appear as FASTA format and can open with: plain text editor, e.g., TextEdit, or sequence alignment software, e.g., MEGAX Results of local BLAST searches of 11 <em>Steinernema carpocapsae</em> (Sc) and 1 <em>S. glaseri</em> (Sg) parasitism and immunomodulation genes performed against the genome and proteome of <em>D. siricidicola</em>. this apear as CSV format (spreadsheets) and can open with TextEdit, MS Excel List of orthogroups with the gene IDs from 17 nematode species assigned to each by the algorithm OrthoFinder. It include the file in plain text format which can open with TextEdit Orthologues between the relevant species pairs, namely <em>S. carpocapsae</em> (SCAR) with <em>D. siricidicola</em> (DSIR), and <em>S. glaseri</em> (SGLA) with <em>D. siricidicola</em>.this is in CSV format and can open with TextEdit, MS Excel Results of hmmsearch function of <em>D. siricidicola</em> genes using a serine protease and serine protease inhibitor (serpin) hidden Markov model, respectively in plain text format and can open with TextEdit Results of comparing the 23 curated <em>D. siricidicola</em> parasitism/host immunomodulation genes with the InterPro database:TSV format and open with: TextEdit, MS Excel.
DOI: 10.25403/upresearchdata.20292564
title: Deladenus siricidicola genes involved in parasitism and host immunomodulation

description: This dataset include the listed multiple files. Amino acid sequences of the 23 curated <em>D. siricidicola</em> genes potentially involved in parasitism and host immunomodulation.The files for the sequencing appear as FASTA format and can open with: plain text editor, e.g., TextEdit, or sequence alignment software, e.g., MEGAX Results of local BLAST searches of 11 <em>Steinernema carpocapsae</em> (Sc) and 1 <em>S. glaseri</em> (Sg) parasitism and immunomodulation genes performed against the genome and proteome of <em>D. siricidicola</em>. this apear as CSV format (spreadsheets) and can open with TextEdit, MS Excel List of orthogroups with the gene IDs from 17 nematode species assigned to each by the algorithm OrthoFinder. It include the file in plain text format which can open with TextEdit Orthologues between the relevant species pairs, namely <em>S. carpocapsae</em> (SCAR) with <em>D. siricidicola</em> (DSIR), and <em>S. glaseri</em> (SGLA) with <em>D. siricidicola</em>.this is in CSV format and can open with TextEdit, MS Excel Results of hmmsearch function of <em>D. siricidicola</em> genes using a serine protease and serine protease inhibitor (serpin) hidden Markov model, respectively in plain text format and can open with TextEdit Results of comparing the 23 curated <em>D. siricidicola</em> parasitism/host immunomodulation genes with the InterPro database:TSV format and open with: TextEdit, MS Excel.