cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.37pvmcvgc
title: Data from: Combining derivative and synchronous approaches for simultaneous spectrofluorimetric determination of Terbinafine and Itraconazole.

description: In this study, determination of terbinafine and itraconazole down
 to biological concentration level has been carried out. The determination
 is based on increasing the selectivity of the spectrofluorimetric
 technique by combining both derivative and synchronous spectrofluorometric
 approaches which permits successful estimation of terbinafine at 257 and
 itraconazole at 319 in presence of each other at  λ of 60 nm. ICH
 validation guidelines were followed to fully validate the method, and
 linearity was obtained for the two drugs over the range of 0.1-0.7 g/mL
 for terbinafine and 0.5-4.0 g/mL for itraconazole. Application of the
 method was successfully carried out in the commercial tablets with good
 agreement with the comparison spectrofluorometric methods. As the
 detection limits were down to 0.013 and 0.1 g/mL and quantitation limits
 were 0.04, 0.032 g/mL for terbinafine and itraconazole, respectively; the
 in-vitro determination of terbinafine and itraconazole in spiked plasma
 samples was applicable. The percentage recoveries in biological samples
 were 97.17 ± 4.54 and 98.75 ± 2.25 for Terbinafine and Itraconazole
 respectively. Water was utilized as the optimum diluting solvent in the
 proposed methodology which adds an eco-friendly merit.
DOI: 10.5061/dryad.mcvdncjxf
title: Data from: Congestion reduction through efficient container movement under stochastic demand

description: In today’s world, there is a significant amount of investigation regarding
 how to efficiently distribute loaded containers from the ports to the
 consignees. However, to fully maximize the process and become more
 environmentally friendly, one should also study how to allocate the empty
 containers created by these consignees. This is an essential part in the
 study of container movement since it balances out the load flow at each
 location. The problem of coordinating the container movement to reuse
 empty containers and lower truck miles is called the “Empty Container
 Problem”. In this work, we develop a scheduling assignment for loaded and
 empty containers that builds on earlier models but incorporates stochastic
 (random) future demand. It is worth mentioning that in the previous
 research [5], the empty container problem was divided into two
 subproblems, including an assignment problem and a vehicle routing problem
 (VRP). The previous research only considered the problem as a one-day
 horizon. But in reality, the container movements are not only to fulfill
 today’s demand at each location but also prepare for the next day’s
 delivery. Thus, incorporating future demand is an essential aspect of the
 problem. By considering the future demand, a better solution can be
 constructed compared to solving the problem as a one-day horizon problem.
 This report shows that the truck miles needed to satisfy the demand at all
 locations is reduced by about 4-7% when considering future stochastic
 demand as opposed to only considering today’s demand,  thus,
 leading to a cleaner and greener solution, creating less congestion and
 lowering the impact of freight movement on the environment.
description: The data is mostly randomly generated data sets and demand data
 for containers near the San Pedro Ports.
description: Data set includes a readme file.
DOI: 10.5061/dryad.jwstqjq65
title: Data from: The negative effect of lianas on tree growth varies with tree species and season

description: Lianas reduce tree growth, reproduction, and survival in tropical forests.
 Liana competition can be particularly intense in isolated forest
 fragments, where liana densities are high, and thus host tree infestation
 is common. Furthermore, lianas appear to grow particularly well during
 seasonal drought, when they may compete particularly intensely with trees.
 Few studies, however, have experimentally quantified the seasonal effects
 of liana competition on multiple tree species in tropical forests. We used
 a liana-removal experiment in a forest fragment in southeastern Brazil to
 test whether the effects of lianas on tree growth varies with season and
 tree species identity. We conducted monthly diameter measurements using
 dendrometer bands on 88 individuals of five tree species for 24 months. We
 found that lianas had a stronger negative effect on some tree species
 during the wet season compared to the dry season. Furthermore, lianas
 significantly reduced the diameter growth of two tree species but had no
 effect on the other three tree species. The strong negative effect of
 lianas on some trees, particularly during the wet season, indicates that
 the effect of lianas on trees varies both seasonally and with tree species
 identity.
description: Sheet1: Annualized monthly mean relative tree growth, obtained by
 multiplying the 3-month season data by 4, and the 6-month season data by
 2. Sheet2: Tree accumulated relative growth per
 year Data was obtained using dendrometer bands
 installed at the breast height on 15 to 20 individuals of five tree
 species. The dendrometer bands were made of stainless steel ribbons (12.7
 x 0.15 mm, width and thickness, respectively) with 0.2 mm precision. For
 half of the individuals of each tree species, we cut all lianas within a
 10 m radius. We measured tree growth monthly for 24 months, starting in
 September 2012. Initially, we installed 10 dendrometer bands for each
 species, 5 for trees in the liana removal treatment (LR) and 5 for
 controls (NLR). In September 2013, we added dendrometer bands to 40
 additional individuals of the five-target species. We quantified the
 change in stem diameter based on the initial diameter of each tree
 individual. The total mean relative growth was calculated as a percentage
 of the initial size for tree species with liana removals (LR) and controls
 (NLR).
DOI: 10.5061/dryad.mkkwh70wd
title: Data from: Influential neighbours: seeds of dominant species affect the germination of common grassland species

description: Questions Germination is the prerequisite of successful establishment in
 plant communities and is influenced by many factors. Therefore, seeds are
 under strong selective pressure to sense and integrate information about
 their environment and modulate germination based on them. In this study,
 we focus on interspecific seed-seed interactions under optimal and
 sub-optimal conditions to test three hypotheses: (H1) Dominant species’
 seeds and emerging seedlings are most likely to be recognized and insert
 significant effect on the germination of common subordinate species; (H2)
 Taxonomically related species are expected to exert stronger influence
 than un-related species on the germination of neighbouring seeds; (H3)
 Facilitative interactions are more likely to occur under sub-optimal
 conditions (drought stress) in the seed-seed interactions. Location
 Semi-dry temperate grassland belonging to Festuco-Brometea class,
 Cluj-Napoca, Romania Methods We assessed the rate and speed of germination
 of three common subordinate Asteraceae species (target species) in a
 controlled germination experiment. The target species’ seeds were sown in
 combination with low and high densities of neighbour species: two dominant
 Poaceae species, two subordinate Asteraceae species and two subordinate
 Apiaceae species; under optimal or drought conditions. Results Under
 optimal water conditions, particularly the seeds of the two dominant
 Poaceae species affected the germination of target species. Under drought
 stress, almost all neighbouring species altered the germination of two of
 the target species, enhancing or reducing their germination rate.
 Facilitation in seed-seed interactions was proved to be species-specific
 rather than general under drought conditions. Conclusions We found
 evidence that the status in a plant community (dominant or subordinate),
 but not the taxonomic relatedness influences the outcome of seed-seed
 interactions during germination. Under drought stress, the persistent
 competitive effect of the dominant species might considerably hinder the
 recruitment of subordinate grassland species.
description: We assessed the rate and speed of germination of three common
 subordinate Asteraceae species (target species) in a controlled
 germination experiment. The target species’ seeds were sown
 in combination with low and high densities of neighbour species: two
 dominant Poaceae species, two subordinate Asteraceae species and two
 subordinate Apiaceae species; under optimal or drought
 conditions.
DOI: 10.5061/dryad.44j0zpc9z
title: The fate of páramo plant assemblages in the sky islands of the northern Andes - Appendix S1. Vegetation and occurrence data used in this study

description: Aims: Assessing climate change impacts on biodiversity is a main
 scientific challenge, especially in the tropics, therefore, we predicted
 the future of plant species and communities on the unique páramo sky
 islands. We implemented the Spatially Explicit Species Assemblage
 Modelling framework, by i) calculating species’ maximum dispersal
 distance, ii) modelling species distributions at present up to 2100, iii)
 assembling models into communities. Finally, we assessed the vulnerability
 of sky islands based on richness and composition changes. Location:
 Ecuadorian super-páramo (&gt;4200 m) Methods: Using species trait
 data, the maximum dispersal distance of 435 species was calculated.
 Species distribution models (SDM) were fitted to obtain current and future
 distribution predictions based on dispersal and bioclimatic factors. The
 final assemblages for present and 2100 were achieved by stacking all
 probabilistic SDMs and applying the probability ranking rule. The
 vulnerability of each sky island was evaluated by quantifying richness and
 composition changes. Results: Maximum dispersal distances ranged between
 0.008-6027 m/year, and across all scenarios, 70% of models showed a net
 loss in species distribution while 9% of all species were predicted to
 undergo extinction by 2100. Local richness was estimated to decrease by
 56.63% on average, and composition changes in each sky island suggested a
 mean loss of 64.74% of their original species pool against a 12.97% gain.
 Finally, 5% of the sky island floras reconverted from high-elevation to
 low-elevation species. These numbers were usually more important for
 high-elevation species and the mountains Pichincha, Ilinizas and Antisana.
 Conclusions: Our study is methodologically pioneer and provides novel
 insight on the future of páramo biodiversity. Significant losses in
 species distribution and changes in community richness and composition
 suggest drastic impacts and call for further study considering additional
 factors, such as land-use. Finally, we recommend focusing monitoring and
 conservation strategies on the northern sky islands in priority.
description: The dataset is issued from a compilation of VegParamo vegetation
 data (www.vegparamo.com) and additional occurence data obtained from
 different herbarium databases. The dataset includes presence-absence data
 for super-páramo species in Ecuador
DOI: 10.5281/zenodo.18312112
title: Pneumonia and antibiotic use in a northern Pakistani village

description: Data describing the use of antibiotics to treat cases of pneumonia in children in Oshikhandass, a village in northern Pakistan
DOI: 10.5061/dryad.ns1rn8ppp
title: Hunt honey bee markers

description: Early honey bee QTL studies relied on RAPD markers. There was a
 large effort in 2007 to re-map these (Hunt et al. 2007). The sequences
 were often not included in the final publication and could be accessed by
 emailing the lead author. These markers were discovered on Greg
 Hunt's desktop computer in 2019. The list is composed of published
 and unpublished marker sequences corresponding to those in QTL papers from
 1995 onwards. This is not a peer-reviewed data set but likely corresponds
 to Hunt et al. 2007 and work by the Hunt lab thereafter. Hunt GJ, Amdam
 GV, Schlipalius D, Emore C, Sardesai N, Williams CE, et al. Behavioral
 genomics of honeybee foraging and nest defense. Naturwissenschaften.
 2007;94: 247–267. doi:10.1007/s00114-006-0183-1
DOI: 10.5061/dryad.hdr7sqvf4
title: Data from: DCDC2 READ1 regulatory element: how temporal processing differences may shape language

description: Classic linguistic theory ascribes language change and diversity to
 population migrations, conquests, and geographic isolation, with the
 assumption that human populations have equivalent language processing
 abilities. We hypothesize that spectral and temporal characteristics make
 some consonant manners vulnerable to differences in temporal precision
 associated with specific population allele frequencies. To test this
 hypothesis, we modeled association between RU1-1 alleles of DCDC2 and
 manner of articulation in 51 populations spanning five continents, and
 adjusting for geographic proximity, genetic and linguistic relatedness.
 RU1-1 alleles, acting through increased expression of DCDC2, appear to
 increase auditory processing precision that enhances stop-consonant
 discrimination, favoring retention in some populations and loss by others.
 These findings enhance classical linguistic theories by adding a genetic
 dimension, which until recently, has not been considered to be a
 significant catalyst for language change.
description: Data associated
 with DCDC2 READ1 regulatory element: how temporal processing differences
 may shape language. Tang et al. RSPB Descriptions: the
 derived dataset and associated analyses reported in the article. Please
 see the article and the SI for details of the datasets and the results of
 the analyses. Included: the linguistic and genetic datasets, an R script
 that uses the datasets to conduct the analyses and the generated output
 files. To run the analyses, please use the .rmd (RMarkdown)
 file.
DOI: 10.5061/dryad.6t1g1jww3
title: Outcomes of the mating interactions of Prionostemma sp.5 harvestmen

description: This dataset contains the information used on the peer-reviewed
 paper Escalante, I., Elias, D.O. Robustness in action: Leg loss
 does not affect mating success in male harvestmen. Behav Ecol
 Sociobiol 76, 20 (2022).
 https://doi.org/10.1007/s00265-022-03127-3. Please consult the open-access
 paper for further information describing the methods on how this data was
 collected, analyzed, and presented.  Briefly,
 we manipulated the type of leg loss (locomotor or sensory) that
 males experienced and assessed its impacts on courtship behavior and
 mating success in a species of Neotropical harvestmen of the
 genus Prionostemma. We conducted mating trials in which we presented an
 intact (8-legged) or autotomized (6-legged) male to a 8-legged females,
 and video recorded their behavior. We qualitatively and quantitatively
 scored their behavior. Lastly, in the preserved specimens we measured
 certain morphological variables to correlate them with the behavioral
 outcome.
DOI: 10.5061/dryad.fttdz08pw
title: Ventromedial prefrontal cortex drives the prioritization of self-associated stimuli in working memory

description: Humans show a pervasive bias for processing self- over other-related
 information, including in working memory (WM), where people prioritize the
 maintenance of self- (over other-) associated cues. To elucidate the
 neural mechanisms underlying this self-bias, we paired a self- vs.
 other-associated spatial WM task with functional magnetic resonance
 imaging (fMRI) and transcranial direct current stimulation (tDCS).
 Maintaining self- (over other-) associated cues resulted in enhanced
 delay-period activity in classic WM regions (frontoparietal cortex), and
 in superior multivoxel pattern decoding of the cue locations from visual
 cortex. Moreover, ventromedial prefrontal cortex (VMPFC) displayed
 enhanced functional connectivity with WM regions during maintenance of
 self-associated cues, which predicted individuals’ behavioral
 self-prioritization effects. In a follow-up tDCS experiment, we targeted
 VMPFC with either excitatory (anodal), inhibitory (cathodal), or sham
 tDCS. Cathodal tDCS eliminated the self-prioritization effect. These
 findings provide strong converging evidence for a causal role of VMPFC in
 driving self-prioritization effects in WM.
DOI: 10.5061/dryad.m905qftxr
title: Data from: Co-occurrence pattern and function prediction of bacterial community in Karst cave

description: Background: Karst caves are considered as extreme environments with
 nutrition deficiency, darkness, and oxygen deprivation, and they are also
 the sources of biodiversity and metabolic pathways. Microorganisms are
 usually involved in the formation and maintenance of the cave system
 through various metabolic activities, and are indicators of changes
 environment influenced by human. Zhijin cave is a typical Karst
 cave and attracts tourists in China. However, the bacterial diversity and
 composition of the Karst cave are still unclear. The present study aims to
 reveal the bacterial diversity and composition in the cave and the
 potential impact of tourism activities, and better understand the roles
 and co-occurrence pattern of the bacterial community in the extreme cave
 habitats. Results: The bacterial community consisted of the major
 Proteobacteria, Actinobacteria, and Firmicutes, with Proteobacteria being
 the predominant phylum in the rock, soil, and stalactite samples.
 Compositions and specialized bacterial phyla of the bacterial communities
 were different among different sample types. The highest diversity index
 was found in the rock samples with a Shannon index of 4.71. Overall,
 Zhijin cave has relatively lower diversity than that in natural caves. The
 prediction of function showed that various enzymes, including
 ribulose-bisphosphate carboxylase, 4-hydroxybutyryl-CoA dehydratase,
 nitrogenase NifH, and Nitrite reductase, involved in carbon and nitrogen
 cycles were detected in Zhijin cave. Additionally, the modularity indices
 of all co-occurrence network were greater than 0.40 and the species
 interactions were complex across different sample types. Co-occurring
 positive interactions in the bacteria groups in different phyla were also
 observed. Conclusion: These results uncovered that the
 oligotrophic Zhijin cave maintains the bacterial communities with the
 diverse metabolic pathways, interdependent and cooperative co-existence
 patterns. Moreover, as a hotspot for tourism, the composition and
 diversity of bacterial community are influenced by tourism activities.
 These afford new insights for further exploring the adaptation of bacteria
 to extreme environments and the conservation of cave ecosystem.
description: non-metric multidimensional scaling) analysis and a test of
 significance among sample types of bacterial community;
 The functional profiles of the bacteria were obtained by PICRUSt
 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved
 States) analysis; A co-occurrence network
 analysis;
description: The data is from the OTU dataset or else community data,
 including row name and column name. The row represents the observations,
 the column means the variables.
DOI: 10.5061/dryad.6djh9w0xs
title: Data from: Multiple environmental controls explain global patterns in soil animal communities

description: Synthesis of soil animal community mass-abundance measurements reported in
 thirteen ecosystems ranging from arctic tundra to tropical rainforest.
 Soil animal groups include Nematoda, Collembola, Enchytraeidae, Acari,
 Diptera, Hymenoptera, Coleoptera, Isopoda, Chilopoda, Araneae, Blattodea,
 Diplopoda, Gastropoda, Clitellata or Other groups. The dataset provides
 abundance and mass measurements per study and soil animal group,
 summarised from the raw soil community dataset (Nraw = 1503). Data were
 summarised for soil animal groups and study years. The summarised dataset
 provides 117 data points, relating the body mass, abundance and biomass of
 each sampled soil animal group per study. Environmental variable
 measurements are provided alongside soil animal measurements, to allow a
 comparative analysis of global environmental controls on soil animal
 communities. The dataset is analysed in Johnston, A.S.A., Sibly, R.M.,
 2020. Multiple environmental controls explain global patterns in
 soil animal communities. Oecologia. DOI:
 10.1007/s00442-020-04640-w
DOI: 10.5061/dryad.s4mw6m947
title: The genome assembly and annotation of Magnolia biondii Pamp., a phylogenetically, economically, and medicinally important ornamental tree species

description: Magnolia biondii Pamp. (Magnoliaceae, magnoliids) is a phylogenetically,
 economically, and medicinally important ornamental tree species widely
 grown and cultivated in the north-temperate regions of China. Contributing
 a genome sequence for M. biondii will help resolve phylogenetic
 uncertainty of magnoliids and further understand individual trait
 evolution in Magnolia. We assembled a chromosome-level reference genome of
 M. biondii using ~67, ~175, and ~154 Gb of raw DNA sequences generated by
 Pacific Biosciences Single-molecule Real-time sequencing, 10X genomics
 Chromium, and Hi-C scaffolding strategies, respectively. The final genome
 assembly was ∼2.22 Gb with a contig N50 of 269.11 Kb and a BUSCO complete
 gene ratio of 91.90%. About 89.17% of the genome length was organized to
 19 chromosomes, resulting in a scaffold N50 of 92.86 Mb. The genome
 contained 48,319 protein-coding genes, accounting for 22.97% of the genome
 length, in contrast to 66.48% of the genome length for the repetitive
 elements. We confirmed a Magnoliaceae specific WGD event that might have
 probably occurred shortly after the split of Magnoliaceae and Annonaceae.
 Functional enrichment of the Magnolia specific and expanded gene families
 highlighted genes involved in biosynthesis of secondary metabolites,
 plant-pathogen interaction, and response to stimulus, which may improve
 ecological fitness and biological adaptability of the lineage.
 Phylogenomic analyses recovered a sister relationship of magnoliids and
 Chloranthaceae, which are sister to a clade comprising monocots and
 eudicots. The genome sequence of M. biondii could empower trait
 improvement, germplasm conservation, and evolutionary studies on rapid
 radiation of early angiosperms.
description: You will get more detail in the readme.txt.