cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5vq2h
title: Data from: Adaptation in response to environmental unpredictability

description: Understanding how organisms adaptively respond to environmental
 fluctuations is a fundamental question in evolutionary biology. The
 Mediterranean region typically exhibits levels of environmental
 unpredictability that vary greatly in habitats over small geographical
 scales. In cyclically parthenogenetic rotifers, clonal proliferation
 occurs along with occasional bouts of sex. These bouts contribute to the
 production of diapausing eggs, which allows survival between growing
 seasons. Here, we studied two diapause-related traits in rotifers using
 clones from nine Brachionus plicatilis natural populations that vary in
 the degree of environmental unpredictability. We tested the hypothesis
 that the level of environmental unpredictability is directly related to
 the propensity for sex and inversely related to the hatching fraction of
 diapausing eggs. We found significant levels of genetic variation within
 populations for both traits. Interestingly, a positive correlation between
 pond unpredictability-quantified in a previous study from satellite
 imagery-and the propensity for sex was found. This correlation suggests a
 conservative, bet-hedging strategy that provides protection against
 unexpectedly short growing seasons. By contrast, the hatching fraction of
 diapausing eggs was not related to the level of environmental
 predictability. Our results highlight the ability of rotifer populations
 to locally adapt to time-varying environments, providing an evolutionarily
 relevant step forward in relating life-history traits to a quantitative
 measure of environmental unpredictability.
description: Data sets and R script
 for propensity for sex and diapausing egg hatching
 fractionThe file contains: (1)
 Raw data from Propensity for sex experiment; (2) Raw data from Diapausing
 egg hatching fraction experiment and (3) R Script used for the statistical
 analyses performed.Franch-Gras_supplementary_data.rar
DOI: 10.5061/dryad.t0rf6
title: Data from: Specific adaptation to strong competitors can offset the negative effects of population size reductions

description: Competition plays a crucial role in determining adaptation of species, yet
 we know little as to how adaptation is affected by the strength of
 competition. On the one hand, strong competition typically results in
 population size reductions, which can hamper adaptation due to a shortage
 of beneficial mutations; on the other hand, specificity of adaptation to
 competitors may offset the negative evolutionary consequences of such
 population size effects. Here, we investigate how competition strength
 affects population fitness in the bacterium Pseudomonas fluorescens. Our
 results demonstrate that strong competition constrains adaptation of focal
 populations, which can be partially explained by population size
 reductions. However, fitness assays also reveal specific adaptation of
 focal populations to particular competitors varying in competitive
 ability. Additionally, this specific adaptation can offset the negative
 effects of competitor-mediated population size reductions under strong
 competition. Our study therefore highlights the importance of opposing
 effects of strong competition on species adaptation, which may lead to
 different outcomes of colonization under intense and relaxed competitive
 environments in the context of population dispersal.
description: fitnessThe relative fitness of focal populations separately measured by three reference populations (inferior, equivalent, superior competitors).population_sizeThe population sizes of focal populations and competitors across 8-transfer selection experiment. PSF stands for population size of focal population. PSC stands for population size of competitor.
DOI: 10.5061/dryad.2vj67
title: Data from: Habitat restoration promotes pollinator persistence and colonization in intensively managed agriculture

description: Widespread evidence of pollinator declines has led to policies supporting
 habitat restoration including in agricultural landscapes. Yet, little is
 yet known about the effectiveness of these restoration techniques for
 promoting stable populations and communities of pollinators, especially in
 intensively managed agricultural landscapes. Introducing floral resources,
 such as flowering hedgerows, to enhance intensively cultivated
 agricultural landscapes is known to increase the abundances of native
 insect pollinators in and around restored areas. Whether this is a result
 of local short-term concentration at flowers or indicative of true
 increases in the persistence and species richness of these communities
 remains unclear. It is also unknown whether this practice supports species
 of conservation concern (e.g., those with more specialized dietary
 requirements). Analyzing occupancies of native bees and syrphid flies from
 330 surveys across 15 sites over eight years, we found that hedgerow
 restoration promotes rates of between-season persistence and colonization
 as compared with unrestored field edges. Enhanced persistence and
 colonization, in turn, led to the formation of more species-rich
 communities. We also find that hedgerows benefit floral resource
 specialists more than generalists, emphasizing the value of this
 restoration technique for conservation in agricultural landscapes.
description: Species occurrence and
 trait data, and JAGS model fileThis zip archive
 contains two items. A text file containing the JAGS model used in the main
 text analysis and an .RData file containing a list with three objects.
 Users will need to install the free software package R at
 (http://cran.us.r-project.org/). The three items in the loaded object are
 [1] X - a site x year x replicate x species array containing species
 occurrence data, [2] day - a site x year x replicate array containing the
 Julian day for the corresponding samples in X, and [3] dprime - a vector
 containing species floral specialization values.hedgerow_occupancy.zip
DOI: 10.5061/dryad.h020k
title: Data from: Eating increases oxidative damage in a reptile

description: While eating has substantial benefits in terms of both nutrient and energy
 acquisition, there are physiological costs associated with digesting and
 metabolizing a meal. Frequently, these costs have been documented in the
 context of energy expenditure while other physiological costs have been
 relatively unexplored. Here, we tested whether the seemingly innocuous act
 of eating affects either systemic pro-oxidant (reactive oxygen
 metabolites: ROM) levels or antioxidant capacity of corn snakes
 (Pantherophis guttatus) by collecting plasma during absorptive (peak
 increase in metabolic rate due to digestion of a meal) and non-absorptive
 (baseline) states. When individuals were digesting a meal, there was a
 minimal increase in antioxidant capacity relative to baseline (4%), but a
 substantial increase in ROMs (nearly 155%), even when controlling for
 circulating nutrient levels. We report an oxidative cost of eating that is
 much greater than that due to long distance flight or mounting an immune
 response in other taxa. This result demonstrates the importance of
 investigating non-energetic costs associated with meal processing, and it
 begs future work to identify the mechanism(s) driving this increase in ROM
 levels. Because energetic costs associated with eating are taxonomically
 widespread, identifying the taxonomic breadth of eating-induced ROM
 increases may provide insights into the interplay between oxidative damage
 and life history theory.
description: DataDryadData used for all data analyses
DOI: 10.5061/dryad.91c0t
title: Data from: Epigenetic response to environmental change: DNA methylation varies with invasion status

description: Epigenetic mechanisms may be important for a native species’ response to
 rapid environmental change. Red Imported Fire Ants (Solenopsis invicta
 Santschi, 1916) were recently introduced to areas occupied by the Eastern
 Fence Lizard (Sceloporus undulatus Bosc & Daudin, 1801).
 Behavioral, morphological, and physiological phenotypes of the Eastern
 Fence Lizard have changed following invasion, creating a natural
 biological system to investigate environmentally induced epigenetic
 changes. We tested for variation in DNA methylation patterns in Eastern
 Fence Lizard populations associated with different histories of invasion
 by Red Imported Fire Ants. At MS-AFLP loci, we detected a higher diversity
 of methylation in Eastern Fence Lizard populations from Fire Ant uninvaded
 versus invaded sites, and uninvaded sites had higher methylation. Our
 results suggest that invasive species may alter methylation frequencies
 and the pattern of methylation among native individuals. While our data
 indicate a high level of intrinsic variability in DNA methylation, DNA
 methylation at some genomic loci may underlie observed phenotypic changes
 in Eastern Fence Lizard populations in response to invasion of Red
 Imported Fire Ants. This process may be important in facilitating
 adaptation of native species to novel pressures imposed by a rapidly
 changing environment.
description: Schrey et al. Eastern
 Fence Lizard and Red Imported Fire Ant DataDNA methylation data and
 site invasion status along with genetic data for Eastern Fence
 LizardsSchrey et al Eastern Fence
 Lizard and Red Improted FIre Ant
 Data.xlsx
DOI: 10.5061/dryad.sp640
title: Data from: Fine-scale population genetic structure of sugar kelp, Saccharina latissima (Laminariales, Phaeophyceae), in eastern Maine, USA

description: There is an interest to develop sugar kelp (Saccharina latissima)
 cultivation in the rural, eastern Maine region of the United States.
 Future farming efforts would benefit from an understanding of the genetic
 diversity and population structure of kelp to inform management and
 conservation, and to identify genetic resources. The purpose of the
 present study was to characterize the fine-scale population genetic
 structure of kelp in eastern Maine using 12 microsatellite loci. A total
 of 188 samples were genotyped from five sampling locations. Overall, kelp
 exhibited relatively low genetic diversity and small but significant
 differentiation among populations (FST = 0.0157). The greatest genetic
 difference was detected between two geographically close populations in
 Penobscot and Frenchman Bays, which is likely due to patterns in the
 Eastern Maine Coastal Current that may limit meiospore recruitment. The
 population structure could not be fully explained by an
 isolation-by-distance model. Fine-scale structuring was also detected
 among populations along the more continuous eastern Maine coastline. These
 differences highlight that sugar kelp populations are finely structured
 across small spatial scales, and that future management and farming
 efforts should aim to maintain genetic diversity and assess the culture
 potential of local populations.
description: Sugar kelp
 microsatellite data for eastern MaineThe following data
 describe sugar kelp (Saccharina latissima) sampled from five intertidal
 sites in eastern Maine (Penobscot Bay, Frenchman Bay, Englishman Bay,
 Starboard Cove, and Cobscook Bay), in GENEPOP file format. Samples were
 genotyped at 10 microsatellite markers, originally identified in this
 species by Paulino et al. 2016.Kelp microsatellite final
 file.txt
DOI: 10.5061/dryad.p56q7
title: Data from: Social feedback and the emergence of rank in animal society

description: Dominance hierarchies are group-level properties that emerge from the
 aggression of individuals. Although individuals can gain critical benefits
 from their position in a hierarchy, we do not understand how real-world
 hierarchies form. Nor do we understand what signals and decision-rules
 individuals use to construct and maintain hierarchies in the absence of
 simple cues such as size or spatial location. A study of conflict in two
 groups of captive monk parakeets (Myiopsitta monachus) found that a
 transition to large-scale order in aggression occurred in newly-formed
 groups after one week, with individuals thereafter preferring to direct
 aggression more frequently against those nearby in rank. We consider two
 cognitive mechanisms underlying the emergence of this order: inference
 based on overall levels of aggression, or on subsets of the aggression
 network. Both mechanisms were predictive of individual decisions to
 aggress, but observed patterns were better explained by rank inference
 through subsets of the aggression network. Based on these results, we
 present a new theory, of a feedback loop between knowledge of rank and
 consequent behavior. This loop explains the transition to strategic
 aggression and the formation and persistence of dominance hierarchies in
 groups capable of both social memory and inference.
description: number of wins by study
 quarterFile contains the number
 of aggressive wins for parakeets in two study groups across four study
 quarters.aggXquarter.txt
DOI: 10.5061/dryad.qs2134t
title: Data from: Isaacs syndrome associated with GABAB and AChR antibodies in sarcomatoid carcinoma

description: Isaacs syndrome is an acquired peripheral nerve hyperexcitability syndrome
 characterized by twitching, painful cramps, stiffness, delayed muscle
 relaxation, and sweating.1 Needle EMG findings include continuous single
 motor unit discharges occurring as doublets, triplets, and multiplet
 single unit discharges firing at higher rates (150–300 Hz; neuromyotonic
 discharges) and at lower rates (less than 60 Hz; myokymic discharges).2
 Isaacs syndrome has been reported in patients with thymoma, small-cell
 lung carcinoma (SCLC), or lymphoma.2 Antibodies specific for voltage-gated
 potassium channels (VGKC) have been reported as a serologic marker of
 Isaacs syndrome. Antibodies specific for the neuronal ganglionic
 acetylcholine receptor (AChR) are sometimes encountered in some patients.1
 It has not been previously associated with sarcomatoid carcinoma (SC) or
 antibodies against γ-aminobutyric acid B (GABAB) receptors, and the latter
 often present in limbic encephalitis and other uncommon clinical syndromes
 (such as cerebellar ataxia).3 Here we describe a case of Isaacs syndrome
 with a positive test for anti-GABAB and anti-AChR antibodies and broad
 tumor screening for this case of SC.
description: Supplementary
 table1Results of laboratory
 examinations in the patient
DOI: 10.5281/zenodo.18383982
title: Source data of Figure 2b & c in "Knowledge-guided artificial intelligence in global change ecology research"

description: Source data for Figure 2b&c in the study "Knowledge-guided artificial intelligence in global change ecology research" to be published in Global Change Biology. 

The  table contains two sheets, corresponding to the source data of Fig. 2b and 2c. They respectively come from Liu et al. (2024): "Knowledge-guided machine learning can improve carbon cycle quantification in agroecosystems" (https://doi.org/10.1038/s41467-023-43860-5) and Khandelwal et al. (2025): "Physics Guided Machine Learning Methods for Hydrology" (https://doi.org/10.48550/arXiv.2012.02854).
DOI: 10.5281/zenodo.18383983
title: Source data of Figure 2b & c in "Knowledge-guided artificial intelligence in global change ecology research"

description: Source data for Figure 2b&c in the study "Knowledge-guided artificial intelligence in global change ecology research" to be published in Global Change Biology. 

The  table contains two sheets, corresponding to the source data of Fig. 2b and 2c. They respectively come from Liu et al. (2024): "Knowledge-guided machine learning can improve carbon cycle quantification in agroecosystems" (https://doi.org/10.1038/s41467-023-43860-5) and Khandelwal et al. (2025): "Physics Guided Machine Learning Methods for Hydrology" (https://doi.org/10.48550/arXiv.2012.02854).
DOI: 10.5281/zenodo.18384846
title: Towards a Sustainability-aware Software Architecture Evaluation for Cloud Based Software Services (Replication Package)

description: This repository contains the replication package for the ECSA'23 paper "Towards a Sustainability-aware Software Architecture Evaluation for Cloud-Based Software Services"
DOI: 10.5281/zenodo.18384847
title: Towards a Sustainability-aware Software Architecture Evaluation for Cloud Based Software Services (Replication Package)

description: This repository contains the replication package for the ECSA'23 paper "Towards a Sustainability-aware Software Architecture Evaluation for Cloud-Based Software Services"
DOI: 10.5061/dryad.mv59665
title: Data from: Catch diversification provides multiple benefits in inland fisheries

description: 1. Diversification of fisheries and agroecosystems can increase and
 stabilize production and revenue, despite unpredictable changes in
 ecosystems and markets. Recent work suggests that diversification can
 provide multiple benefits simultaneously, but empirical evidence of
 relationships between catch or crop diversification and the provision of
 multiple benefits is scarce. The effect of diversification on multiple
 benefits may vary temporally and among systems. 2. Using long-term (11–54
 years) capture fishery statistics from five Japanese lakes, we examined
 whether catch diversity increased multiple benefits, including revenue,
 nitrogen and phosphorus removal, and seasonal commercial species
 diversity. We also assessed whether catch species diversity increased the
 stability of each benefit via a portfolio effect. 3. Our study revealed
 positive relationships between catch diversity and the bundle of benefits
 (the mean of all normalized benefits; i.e., the provisioning of multiple
 benefits) in all five lakes, even after controlling for the total catch.
 The effects of catch diversity on individual benefits were positive or
 insignificant and differed among the study lakes. These differences were
 likely caused by the range and variation of functional characteristics
 among catch species. The influence of the annual mean price on revenue,
 suggested that market forces did have an effect. 4. We also found that
 aggregated revenue as well as N and P removal were 1.6-2.1 times (four
 lakes), 1.5-2.2 times (four lakes), and 1.4-2.2 times (all five lakes)
 more stable, respectively, than would be expected if only a single species
 were harvested. This greater stability suggests that maintaining catch
 species diversity may increase the stability of multiple benefits through
 portfolio effects. 5. Synthesis and applications. Our analysis suggests
 that catch diversification has great potential to increase the magnitude
 and stability of multiple benefits. Although total catch alone was
 sufficient to provide multiple benefits, a goal of maximization with
 specialization may decrease stability and deplete resources. Under
 fluctuating environmental and economic conditions, diversification
 strategies promise to be an effective management option for achieving
 resilient and sustainable inland fisheries. In places, such as Japan, that
 have experienced decreased demand, both demand diversification and
 maintenance would be needed as part of a diversification
 strategy.14-Nov-2018
description: Japanese_inland_fiseries_data_Matsuzaki_JAE2018
DOI: 10.34740/kaggle/dsv/14636363
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.5061/dryad.2d7j0
title: Data from: Cost of reproduction in the Queensland fruit fly: Y-model vs. lethal protein hypothesis

description: The trade-off between lifespan and reproduction is commonly explained by
 differential allocation of limited resources. Recent research has shown
 that the ratio of protein to carbohydrate (P:C) of a fly's diet
 mediates the lifespan/reproduction trade-off, with higher P:C diets
 increasing egg production but decreasing lifespan. To test if this P:C
 effect is due to changing allocation strategies (Y-model hypothesis) or
 detrimental effects of protein ingestion on lifespan (lethal protein
 hypothesis), we measured lifespan and egg production in Queensland fruit
 flies varying in reproductive status (mated, virgin, and sterilized
 females, virgin males) that were fed one of 18 diets varying in protein
 and carbohydrate amounts. The Y-model predicts that for sterilized females
 and for males, which require little protein for reproduction, there will
 be no effect of P:C ratio on lifespan; the lethal protein hypothesis
 predicts that the effect of P:C ratio should be similar in all groups. In
 support of the lethal protein hypothesis, and counter to the Y model, the
 P:C ratio of the ingested diets had similar effects for all groups. We
 conclude that the trade-off between lifespan and reproduction is mediated
 by the detrimental side-effects of protein ingestion on lifespan.
description: Egg rate
 dataThis file contains the
 egg rate data for virgin and mated females.egg_data.csvlifespan_dataThis file contains lifespan data.
DOI: 10.5061/dryad.g6v8v5kq
title: Data from: Empria formosana sp. n. from Taiwan with notes on E. wui species group (Hymenoptera, Tenthredinidae)

description: Empria formosana Prous & Heidemaa, sp. n. is described from the
 mountains of Taiwan. The record is the first of this genus from Taiwan and
 one of the southernmost occurrences of the Empria species in the
 Palaearctic. The new species appears to be close to E. wui Wei &
 Nie, 1998 and some other species from China and Japan with incomplete vein
 2A+3A in forewing (unique among Empria). Remarkably, E. formosana shows
 considerable intraspecific variation for this character. The mitochondrial
 (COI) and nuclear (ITS1 and ITS2) sequences of three undescribed species
 morphologically closest to E. formosana and E. wui indicate that most
 likely they all form a monophyletic group within Empria, defined here as
 E. wui species group.
description: empria_taiwanThe tab delimited text file contains occurrence data and GenBank accession numbers for the studied specimens. Column headings are identical to Darwin Core terms (http://rs.tdwg.org/dwc/terms/index.htm), except "GenBank_COI", "GenBank_ITS1", and "GenBank_ITS2". These Column headings refer to GenBank accessions of cytochrome c oxidase I, internal transcribed spacer 1, and internal transcribed spacer 2 genes, respectively. A 157 bp fragment of cytochrome c oxidase I of specimen NSMT180 is also included under the column heading "COI_sequence".
DOI: 10.5061/dryad.cg7b7
title: Data from: Nonlandmark classification in paleobiology: computational geometry as a tool for species discrimination

description: One important and sometimes contentious challenge in paleobiology is
 discriminating between species, which is increasingly accomplished by
 comparing specimen shape. While lengths and proportions are needed to
 achieve this task, finer geometric information, such as concavity,
 convexity, and curvature, plays a crucial role in the undertaking.
 Nonetheless, standard morphometric methodologies such as landmark analysis
 are not able to capture in a quantitative way these features and other
 important fine-scale geometric notions. Here we develop and implement
 state-of-the-art techniques from the emerging field of computational
 geometry to tackle this problem with the Mississippian blastoid
 Pentremites. We adapt previously known computational framework to produce
 a measure of dissimilarity between shapes. More precisely, we compute
 “distances” between pairs of 3D surface scans of specimens by comparing a
 mix of global and fine-scale geometric measurements. This process uses the
 3D scan of a specimen as a whole piece of data incorporating complete
 geometric information about the shape; as a result, scans used must
 accurately reflect the geometry of whole, undamaged, undeformed specimens.
 Using this information we are able to represent these data in clusters,
 and ultimately reproduce and refine results obtained in previous work on
 species discrimination. Our methodology is landmark-free, and therefore
 faster and less prone to human error than previous landmark-based
 methodologies.
description: Supplementary_AlgorithmRThe following coarse algorithm gives an outline of how the estimate for CPD is calculated