cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12728531
title: Tsimane prenatal analytical code

description: R markdown file containing analytical code for accompanying Tsimaneprenatal.csv dataset. Submitted with manuscript "
DOI: 10.6084/m9.figshare.12728480
title: Electromagnetic Propagation Model

description: It is a dataset of the propagation model of pathloss and shadowing with different parameters that include correlation distances (10m, 15m, 20m, 25m, 30m) and standard deviations ( 2dB, 4dB, 6dB, 8dB,10dB, 12dB).
DOI: 10.6084/m9.figshare.12728531.v2
title: Tsimane prenatal analytical code

description: R markdown file containing analytical code for accompanying Tsimaneprenatal.csv dataset. Submitted with manuscript "
DOI: 10.6084/m9.figshare.12728519.v1
title: Tsimane prenatal practice dataset

description: Dataset accompanying manuscript "Traditional and biomedical maternal and neonatal care practices in a rural Indigenous population of the Bolivian Amazon".
DOI: 10.6084/m9.figshare.12728531.v1
title: Tsimane prenatal practices analytical code

description: R markdown file containing analytical code for accompanying Tsimaneprenatal.csv dataset. Submitted with manuscript "
DOI: 10.6084/m9.figshare.12728444
title: Maqu ELBARA-III dataset_Version1.0Update: Multiyear in-situ L-band microwave radiometry of land surface processes on the Tibetan Plateau

description: These are updates to: Su, Z. et al. Multiyear in-situ L-band microwave radiometry of land surface processes on the Tibetan Plateau. <i>figshare.</i> https://doi.org/10.6084/m9.figshare.12058038.v1 (2020).
DOI: 10.6084/m9.figshare.12728237
title: Analysis Gene List.xlsx

description: Insulin and glucose related gene list
DOI: 10.6084/m9.figshare.12728237.v1
title: Analysis Gene List.xlsx

description: Insulin and glucose related gene list
DOI: 10.6084/m9.figshare.12728192
title: CSV data on Attitude and preventive practices towards COVID-19 disease and the impact of awareness training on knowledge of the disease among correctional officers.csv

description: Data on the COVID-19 knowledge, attitude and practices among correctional officers in Nigeria. Entered in CSV format of the Microsoft excel<br>
DOI: 10.6084/m9.figshare.12728096
title: GlobES ecosystem change maps

description: Ecosystem change maps based on the GlobES ecosystem Data Cube. The layer "GlobES_changeType_19920101-20180101_1km.tif" depicts types of changes in ecosystem dominance registered between 1992 and 2018. Each change type and their respective grid identifiers are described in "changeType_legend.csv". "GlobES_transitions_19920101-20180101_1km.tif" presents the two leading ecosystem types responsible for those changes. The first ecosystem reflects the initial condition in 1992, and the second the condition in 2018.<br>
DOI: 10.6084/m9.figshare.12728192.v1
title: CSV data on Attitude and preventive practices towards COVID-19 disease and the impact of awareness training on knowledge of the disease among correctional officers.csv

description: Data on the COVID-19 knowledge, attitude and practices among correctional officers in Nigeria. Entered in CSV format of the Microsoft excel<br>
DOI: 10.6084/m9.figshare.12728006
title: GlobES ecosystem dominance maps

description: Maps of ecosystem dominance generated from the GlobES ecosystem data cube. For each year in our time series, we iterated through each pixel, and classified it with a unique identifier corresponding to the ecosystem type with the highest area. The GlobES Data Cube includes global time-series for 65 ecosystem types and, therefore, the current dataset has a maximum of 65 classes. The output was a time-series of 27 yearly layers depicting changes in per-pixel ecosystem dominance between 1992 and 2018.<br>The list of classes and the corresponding unique grid identifiers is described in "legend.csv", which contains information on:<br>- Class identifier within the GlobES Data Cube ("class_id")<br>- Numeric identifier within the current dataset ("grid_id")<br>- Class name ("long_name" and "short_name")<br>- Ecosystem class group (ecosystem_group")<br>
DOI: 10.6084/m9.figshare.12728051
title: Supplementary Material for: Nephrology Provider Surprise Question Response and Hospitalizations in Older Adults with Advanced CKD

description: <b><i>Background:</i></b> Older adults with advanced non-dialysis-dependent chronic kidney disease (NDD-CKD) face a high risk of hospitalization and related adverse events. <b><i>Methods:</i></b> This prospective cohort study followed nephrology clinic patients ≥60 years old with NDD-CKD stages 4-5. After an eligible patient’s office visit, study staff asked the patient’s provider to rate the patient’s risk of death within the next year using the surprise question (“Would you be surprised if this patient died in the next 12 months?”) with a 5-point Likert scale response (1, “definitely not surprised” to 5, “very surprised”). We used a statewide database to ascertain hospitalization during follow-up. <b><i>Results:</i></b> There were 488 patients (median age 72 years, 51% female, 17% black) with median estimated glomerular filtration rate 22 mL/min/1.73 m<sup>2</sup>. Over a median follow-up of 2.1 years, the rates of hospitalization per 100 person-years in the respective response groups were 41 (95% confidence interval [CI]: 34–50), “very surprised”; 65 (95% CI: 55–76), “surprised”; 98 (95% CI: 85–113), “neutral”; 125 (95% CI: 107–144), “not surprised”; and 120 (95% CI: 94–151), “definitely not surprised.” In a fully adjusted cumulative probability ordinal regression model for proportion of follow-up time spent hospitalized, patients whose providers indicated that they would be “definitely not surprised” if they died spent a greater proportion of follow-up time hospitalized compared with those whose providers indicated that they would be “very surprised” (odds ratio 2.4, 95% CI: 1.0–5.7). There was a similar association for time to first hospitalization. <b><i>Conclusion:</i></b> Nephrology providers’ responses to the surprise question for older patients with advanced NDD-CKD were independently associated with proportion of future time spent hospitalized and time to first hospitalization. Additional studies should examine how to use this information to provide patients with anticipatory guidance on their possible clinical trajectory and to target potentially preventable hospitalizations.
DOI: 10.6084/m9.figshare.12728051.v1
title: Supplementary Material for: Nephrology Provider Surprise Question Response and Hospitalizations in Older Adults with Advanced CKD

description: <b><i>Background:</i></b> Older adults with advanced non-dialysis-dependent chronic kidney disease (NDD-CKD) face a high risk of hospitalization and related adverse events. <b><i>Methods:</i></b> This prospective cohort study followed nephrology clinic patients ≥60 years old with NDD-CKD stages 4-5. After an eligible patient’s office visit, study staff asked the patient’s provider to rate the patient’s risk of death within the next year using the surprise question (“Would you be surprised if this patient died in the next 12 months?”) with a 5-point Likert scale response (1, “definitely not surprised” to 5, “very surprised”). We used a statewide database to ascertain hospitalization during follow-up. <b><i>Results:</i></b> There were 488 patients (median age 72 years, 51% female, 17% black) with median estimated glomerular filtration rate 22 mL/min/1.73 m<sup>2</sup>. Over a median follow-up of 2.1 years, the rates of hospitalization per 100 person-years in the respective response groups were 41 (95% confidence interval [CI]: 34–50), “very surprised”; 65 (95% CI: 55–76), “surprised”; 98 (95% CI: 85–113), “neutral”; 125 (95% CI: 107–144), “not surprised”; and 120 (95% CI: 94–151), “definitely not surprised.” In a fully adjusted cumulative probability ordinal regression model for proportion of follow-up time spent hospitalized, patients whose providers indicated that they would be “definitely not surprised” if they died spent a greater proportion of follow-up time hospitalized compared with those whose providers indicated that they would be “very surprised” (odds ratio 2.4, 95% CI: 1.0–5.7). There was a similar association for time to first hospitalization. <b><i>Conclusion:</i></b> Nephrology providers’ responses to the surprise question for older patients with advanced NDD-CKD were independently associated with proportion of future time spent hospitalized and time to first hospitalization. Additional studies should examine how to use this information to provide patients with anticipatory guidance on their possible clinical trajectory and to target potentially preventable hospitalizations.
DOI: 10.6084/m9.figshare.12728006.v1
title: GlobES ecosystem dominance maps

description: Maps of ecosystem dominance generated from the GlobES ecosystem data cube. For each year in our time series, we iterated through each pixel, and classified it with a unique identifier corresponding to the ecosystem type with the highest area. The GlobES Data Cube includes global time-series for 65 ecosystem types and, therefore, the current dataset has a maximum of 65 classes. The output was a time-series of 27 yearly layers depicting changes in per-pixel ecosystem dominance between 1992 and 2018.<br>The list of classes and the corresponding unique grid identifiers is described in "legend.csv", which contains information on:<br>- Class identifier within the GlobES Data Cube ("class_id")<br>- Numeric identifier within the current dataset ("grid_id")<br>- Class name ("long_name" and "short_name")<br>- Ecosystem class group (ecosystem_group")<br>
DOI: 10.6084/m9.figshare.12727730
title: Supplementary Material for: Recommendations on Surveillance for Differentiated Thyroid Carcinoma in Children with PTEN Hamartoma Tumor Syndrome

description: <b><i>Background:</i></b> PTEN hamartoma tumor syndrome (PHTS) represents a group of syndromes caused by a mutation in the <i>PTEN</i> gene. Children with a germline <i>PTEN</i> mutation have an increased risk of developing differentiated thyroid carcinoma (DTC). Several guidelines have focused on thyroid surveillance in these children, but studies substantiating these recommendations are lacking. <b><i>Objective:</i></b> The present study intends to provide the available evidence for a thyroid carcinoma surveillance program in children with PHTS. <b><i>Methods:</i></b> An extensive literature search was performed to identify all studies on DTC in pediatric PHTS patients. Two pediatric cases are presented to illustrate the pros and cons of thyroid carcinoma surveillance. Recommendations for other patient groups at risk for DTC were evaluated. Consensus within the study team on recommendations for children with PHTS was reached by balancing the incidence and behavior of DTC with the pros and cons of thyroid surveillance, and the different surveillance methods. <b><i>Results:</i></b> In 5 cohort studies the incidence of DTC in childhood ranged from 4 to 12%. In total 57 cases of DTC and/or benign nodular disease in pediatric PHTS patients were identified, of which 27 had proven DTC, with a median age of 12 years (range 4–17). Follicular thyroid carcinoma (FTC) was diagnosed in 52% of the pediatric DTC patients. No evidence was found for a different clinical behavior of DTC in PHTS patients compared to sporadic DTC. <b><i>Conclusions:</i></b> Children with PHTS are at increased risk for developing DTC, with 4 years being the youngest age reported at presentation and FTC being overrepresented. DTC in pediatric PHTS patients does not seem to be more aggressive than sporadic DTC. <b><i>Recommendations:</i></b> Surveillance for DTC in pediatric PHTS patients seems justified, as early diagnosis may decrease morbidity. Consensus within the study team was reached to recommend surveillance from the age of 10 years onwards, since at that age the incidence of DTC seems to reach 5%. Surveillance for DTC should consist of yearly neck palpation and triennial thyroid ultrasound. Surveillance in children with PHTS should be performed in a center of excellence for pediatric thyroid disease or PHTS.
DOI: 10.6084/m9.figshare.12727673
title: M28seasonal_full_dataset2.csv

description: This table contains life history data (reproductive mode, fecundity, age, size and survival) of Hydra oligactis polyps. Experimental animals belong to strains that were collected from an oxbow lake near Tiszadorogma, Hungary on four distinct dates: 31th May 2018, 1st Oct. 2018, 16th May 2019, 24th Sept. 2019. After collection, founding polyps were propagated asexually for 10 weeks on 18 degrees Celsius, then cooled to 8 degrees Celsius to induce sex and record post-reproductive survival.<br> <br>The table contains the following variables:#PolypID: unique identifier of each polyp#CollectionDate: the date when the founding polyp of the strain was collected#StrainID: unique identifier of strains established from field-collected individuals#Body_size: surface area of the body column of hydra polyps in square mm#PolypAge: age of polyps in days at the time of cooling#Buds.Warm: number of buds produced by this polyp prior to cooling#Buds.Cold: number of buds produced by this polyp after cooling#SexStart: days elapsed between the date of cooling and the first appearance of gonads#SumEggs: number of eggs produced by a female polyp#MaxTestis: max no. testes observed on a male polyp#Sex: ASEX - remained asexual after cooling asexual; M - male, produced testes; F - female, produced eggs#Survival: 1 - survived; 0 - not survived#Time: Collection batch for the founding polyp of the strain. One of: 2018 spring, 2018 autumn, 2019 spring or 2019 autumn#Year: collection year#Season: collection season<br><br><br>
DOI: 10.6084/m9.figshare.12727682
title: Supplementary Material for: Thin Slices and Maximum Intensity Projection Reconstructions Increase Sensitivity to Hyperdense Middle Cerebral Artery Sign in Acute Ischemic Stroke

description: <b><i>Introduction:</i></b> Cranial nonenhanced CT (NECT) imaging in hyperacute ischemic stroke is rarely used for assessing arterial obstruction of middle cerebral artery by identifying hyperdense artery sign (HAS). Considering, however, its growing importance due to its impact on the decision-making process of thrombolysis with or without mechanical thrombectomy improved sensitivity to HAS is necessary, particularly in the group of less experienced clinicians being frequently the first one assessing the presence of HAS on NECT. <b><i>Objective:</i></b> The present study aimed to investigate the effect of different NECT image reconstructions on the correct detection of hyperdense middle cerebral artery sign in a cohort of observers with lower experience level on NECT. Particularly, MIP image reconstructions were expected to be useful for less experienced observers due to both strengthening of the hyperdensity of HAS and streamlining to less image slices. <b><i>Methods:</i></b> Twenty-five of 100 patients’ NECT image data presented with HAS. Sixteen observers with lower practice level on NECT (10 radiologists and 6 neurologists) evaluated independently the 3 image reconstructions of each data set with thin slice 1.5 mm, thick slab 5 mm, and 6-mm maximum intensity projection (MIP) and rated the presence of HAS in middle cerebral artery. A GEE model with random observer effect was used to examine the influence of the 3 image reconstructions on sensitivity to HAS. A linear mixed effects regression model was used to investigate the ranking of detectability of HAS. Interrater reliability was determined by Fleiss’ kappa coefficient (κ). <b><i>Results:</i></b> Recognition of HAS and sensitivity to HAS significantly differed between the 3 image reconstructions (<i>p</i> = 0.0106). MIP and thin slice reconstructions yielded each on average the highest sensitivities with 73% compared to thick slab reconstruction with 45% sensitivity. The interobserver reliability was fair (κ, 0.3–0.4). Detectability of HAS was significantly easier and better visible ranked on MIP and thin slice reconstructions compared to thick slab (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> MIP and thin slice reconstructions increased the sensitivity to HAS (73%), whereas thick slab reconstructions seemed to be less appropriate (45%).
DOI: 10.6084/m9.figshare.12727670
title: Why do Benguela Niños lead Atlantic Niños?

description: Model data used for the paper "Why do Benguela Niños lead Atlantic Niños?", by S. Illig, M.L. Bachèlery and J. Lübbecke
DOI: 10.6084/m9.figshare.12727682.v1
title: Supplementary Material for: Thin Slices and Maximum Intensity Projection Reconstructions Increase Sensitivity to Hyperdense Middle Cerebral Artery Sign in Acute Ischemic Stroke

description: <b><i>Introduction:</i></b> Cranial nonenhanced CT (NECT) imaging in hyperacute ischemic stroke is rarely used for assessing arterial obstruction of middle cerebral artery by identifying hyperdense artery sign (HAS). Considering, however, its growing importance due to its impact on the decision-making process of thrombolysis with or without mechanical thrombectomy improved sensitivity to HAS is necessary, particularly in the group of less experienced clinicians being frequently the first one assessing the presence of HAS on NECT. <b><i>Objective:</i></b> The present study aimed to investigate the effect of different NECT image reconstructions on the correct detection of hyperdense middle cerebral artery sign in a cohort of observers with lower experience level on NECT. Particularly, MIP image reconstructions were expected to be useful for less experienced observers due to both strengthening of the hyperdensity of HAS and streamlining to less image slices. <b><i>Methods:</i></b> Twenty-five of 100 patients’ NECT image data presented with HAS. Sixteen observers with lower practice level on NECT (10 radiologists and 6 neurologists) evaluated independently the 3 image reconstructions of each data set with thin slice 1.5 mm, thick slab 5 mm, and 6-mm maximum intensity projection (MIP) and rated the presence of HAS in middle cerebral artery. A GEE model with random observer effect was used to examine the influence of the 3 image reconstructions on sensitivity to HAS. A linear mixed effects regression model was used to investigate the ranking of detectability of HAS. Interrater reliability was determined by Fleiss’ kappa coefficient (κ). <b><i>Results:</i></b> Recognition of HAS and sensitivity to HAS significantly differed between the 3 image reconstructions (<i>p</i> = 0.0106). MIP and thin slice reconstructions yielded each on average the highest sensitivities with 73% compared to thick slab reconstruction with 45% sensitivity. The interobserver reliability was fair (κ, 0.3–0.4). Detectability of HAS was significantly easier and better visible ranked on MIP and thin slice reconstructions compared to thick slab (<i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> MIP and thin slice reconstructions increased the sensitivity to HAS (73%), whereas thick slab reconstructions seemed to be less appropriate (45%).
DOI: 10.6084/m9.figshare.12727652
title: Supplementary Material for: Acceptance and Benefits of Electro-Acoustic Stimulation for Conventional-Length Electrode Arrays

description: <b><i>Background:</i></b> Prior studies have shown an advantage for electro-acoustic stimulation (EAS) in cochlear implant (CI) patients with residual hearing, but the degree of benefit can vary. The objective was to explore which factors relate to performance with and acceptance of EAS for CI users with conventional-length electrodes. <b><i>Methods:</i></b> A retrospective chart review was conducted for adults with an average threshold of 75 dB hearing loss or better across 250 and 500 Hz preoperatively (<i>n</i> = 83). All patients underwent cochlear implantation with a conventional-length electrode. Low-frequency audiometric thresholds were measured at initial activation as well as 3 and 12 months postoperatively to determine who met the criteria for EAS. Speech perception for CNC words and AzBio sentences in quiet and +10 dB SNR noise was evaluated 3 and 12 months after activation. <b><i>Results:</i></b> Speech perception in quiet and noise was similar regardless of whether or not the patient was eligible for EAS. Less than half of the patients who met the EAS criteria chose to use it, citing reasons such as physical discomfort or lack of perceived benefit. EAS users performed better on CNC words but not sentence recognition than EAS nonusers. <b><i>Conclusions:</i></b> EAS use is dependent on audiologic and nonaudiologic issues. Hearing preservation is possible with conventional electrodes, but hearing preservation alone does not guarantee superior speech perception.
DOI: 10.6084/m9.figshare.12727118
title: Supplemental Morphologika file

description: Morphologika for the 3D GM sexual dimorphism analyses
DOI: 10.6084/m9.figshare.12727652.v1
title: Supplementary Material for: Acceptance and Benefits of Electro-Acoustic Stimulation for Conventional-Length Electrode Arrays

description: <b><i>Background:</i></b> Prior studies have shown an advantage for electro-acoustic stimulation (EAS) in cochlear implant (CI) patients with residual hearing, but the degree of benefit can vary. The objective was to explore which factors relate to performance with and acceptance of EAS for CI users with conventional-length electrodes. <b><i>Methods:</i></b> A retrospective chart review was conducted for adults with an average threshold of 75 dB hearing loss or better across 250 and 500 Hz preoperatively (<i>n</i> = 83). All patients underwent cochlear implantation with a conventional-length electrode. Low-frequency audiometric thresholds were measured at initial activation as well as 3 and 12 months postoperatively to determine who met the criteria for EAS. Speech perception for CNC words and AzBio sentences in quiet and +10 dB SNR noise was evaluated 3 and 12 months after activation. <b><i>Results:</i></b> Speech perception in quiet and noise was similar regardless of whether or not the patient was eligible for EAS. Less than half of the patients who met the EAS criteria chose to use it, citing reasons such as physical discomfort or lack of perceived benefit. EAS users performed better on CNC words but not sentence recognition than EAS nonusers. <b><i>Conclusions:</i></b> EAS use is dependent on audiologic and nonaudiologic issues. Hearing preservation is possible with conventional electrodes, but hearing preservation alone does not guarantee superior speech perception.
DOI: 10.26180/5f200cb61a496
title: Trade Facilitation in the Presence of Non-independent Impediments - NEW

description: This is the data used in the paper by the same title
DOI: 10.6084/m9.figshare.12727109
title: Rcode Supplemental Material

description: R code file for analyses
DOI: 10.23644/uu.12727040
title: Scown et al. (2020). One Earth. Supplemental Data and Code.

description: All code and data required to reproduce the published results of Scown et al., 2020, One Earth.<br>Note the code requires internet access to download data directly from Eurostat. Also note that as Eurostat updates NUTS region versions, alignment with the 2013 NUTS version used in the code will change.<br>
DOI: 10.6084/m9.figshare.12727109.v1
title: Rcode Supplemental Material

description: R code file for analyses
DOI: 10.23644/uu.12727040.v1
title: Scown et al. (2020). One Earth. Supplemental Data and Code.

description: All code and data required to reproduce the published results of Scown et al., 2020, One Earth.<br>Note the code requires internet access to download data directly from Eurostat. Also note that as Eurostat updates NUTS region versions, alignment with the 2013 NUTS version used in the code will change.<br>