cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7umnvf
title: Occurrence Download

description: A dataset containing 6446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "DatasetKey is one of (2023 Contributions of Plant Specimen Data inside China, INPA - Observations, iNaturalist Research-grade Observations, Royal Botanic Gardens, Kew - Herbarium Specimens, Naturalis Biodiversity Center (NL) - Botany, KSA Flora Survey 2013, Herbarium Dresdense, Edinburgh (E) Herbarium Specimens, Plant, NIEK_NES, Plant Specimen from Herbarium (CDBI) in China, Chengdu Institute of Botany, Chinese Academy of Sciences, Plant Specimen in Yunnan, China from Herbarium (PE),Institute of Botany, Chinese Academy of Sciences, Some Plant Specimens from PE Herbarium in China from 1900 to 1950, Plant Specimen from Herbarium (LBG) in China, Lushan Botanical Garden, Jiangxi and Chinese Academy of Sciences, World Plant Specimen from the Herbaria in China, Plant Specimen from Herbarium (IBK) in China, Guangxi Institute of Botany, Chinese Academy of Sciences, 500,000 plant Specimens from PE Herbarium in China from 1950 to 1999, Some Plant Specimens from KUN, IBSC, NAS Herbarium in China from 1900 to 1950)",
 "PublishingOrg is one of (a2fa5b68-3ebf-4845-abc5-f456d251386f, 4f160e00-329d-11d9-8439-b8a03c50a862, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, 061b4f20-f241-11da-a328-b8a03c50a862, 396d5f30-dea9-11db-8ab4-b8a03c50a862, e27f5129-68bb-48eb-81b5-2e9f50c71817, 98e934b0-5f31-11de-b67e-b8a03c50a862, ce3cfcc0-6d56-11db-a819-b8a03c50a862, 748c0800-dd56-4c5c-9fc1-499bd7d6a631, 6f2da4d9-8bd9-4f4f-852b-22cde4a43a01)",
 "TaxonKey is Aristolochia"
 ]
}

 The dataset includes 6446 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002440-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2v6wwpzjv
title: Data from: The effects of food supply on reproductive hormones and timing of reproduction in an income-breeding seabird

description: Current food supply is a major driver of timing of breeding in
 income-breeding animals, likely because increased net energy balance
 directly increases reproductive hormones and advances breeding. In capital
 breeders, increased net energy balance increases energy reserves, which
 eventually leads to improved reproductive readiness and earlier breeding.
 To test the hypothesis that phenology of income-breeding birds is
 independent of energy reserves, we conducted an experiment on
 food-supplemented (“fed”) and control female black-legged kittiwakes
 (Rissa tridactyla). We temporarily increased energy costs (via weight
 handicap) in a 2 × 2 design (fed/unfed;
 handicapped/unhandicapped) during the pre-laying period and observed
 movement via GPS-accelerometry. We measured body mass, baseline hormones
 (corticosterone; luteinising hormone) before and after handicap
 manipulation, and conducted a gonadotropin-releasing hormone challenge.
 Females from all treatment groups foraged in similar areas, implying that
 individuals could adjust time spent foraging, but had low flexibility to
 adjust foraging distance. Consistent with the idea that income breeders do
 not accumulate reserves in response to increased food supply, fed birds
 remained within an energy ceiling by reducing time foraging instead of
 increasing energy reserves. Moreover, body mass remained constant until
 the onset of follicle development 20 days prior to laying
 regardless of feeding or handicap, implying that females were using a
 ‘lean and fit’ approach to body mass rather than accumulating lipid
 reserves for breeding. Increased food supply advanced endocrine and laying
 phenology and altered interactions between the
 hypothalamic-pituitary-adrenal axis and the hypothalamic-pituitary-gonadal
 axis, but higher energy costs (handicap) had little effect. Consistent
 with our hypothesis, increased food supply (but not net energy balance)
 advanced endocrine and laying phenology in income-breeding birds without
 any impact on energy reserves.
description: GPS-accelerometers (12 g, AxyTrek, Technosmart EU)
 were attached to the tail of female black-legged kittiwakes
 (<em>Rissa tridactyla</em>)
 Deployed/retrieved at Middleton Island, Alaska
 During the prelaying period (May-June) in 2018
 GPS fix rate = 1 location every 3 minutes
 Acceleration recorded at 25 Hz Deployments
 lasted, on average, 4.3 days File naming system:
 [DeviceID]_[BirdID]_[DeploymentDate%d%b%Y] 
 These are raw, unprocessed data files. Each csv contains
 GPS-accelerometer data for one female kittiwake.
 Detailed methods are described in: Whelan, S.,
 Hatch, S.A., Benowitz-Fredericks, ZM., Parenteau, C., Chastel, O.,
 & Elliott, K.H. (2021) The effects of food supply on reproductive
 hormones and timing of reproduction in an income-breeding seabird.
 Hormones and Behavior, 127, 104874. DOI: https://doi.org/10.1016/j.yhbeh.2020.104874
description: See Supplementary Materials of the associated paper for
 metadata.
DOI: 10.5061/dryad.1c59zw3sq
title: Strength in numbers? Cytotype frequency mediates effect of reproductive barriers in mixed-ploidy arrays.

description: When differentiated lineages come into contact, their fates depend on
 demographic and reproductive factors. These factors have been well-studied
 in taxa of the same ploidy, but less is known about sympatric lineages
 that differ in ploidy, particularly with respect to demographic factors.
 We assessed prezygotic, postzygotic, and total reproductive isolation in
 naturally-pollinated arrays of diploid-tetraploid and tetraploid-hexaploid
 population mixes of Campanula rotundifolia by measuring pollinator
 transitions, seed yield, germination rate, and proportion of hybrid
 offspring. Four frequencies of each cytotype were tested, and pollinators
 consistently overvisited rare cytotypes. Seed yield and F1 hybrid
 production were greater in 4X-6X arrays than 2X-4X arrays, while
 germination rates were similar, creating two distinct patterns of
 reproductive isolation. In 2X-4X arrays, postzygotic isolation was
 near-complete (3% hybrid offspring), and prezygotic isolation associated
 with pollinator preference is expected to facilitate the persistence of
 minority cytotypes. However, in 4X-6X arrays where postzygotic isolation
 permitted hybrid formation (44% hybrids), pollinator behavior drove
 patterns of reproductive isolation, with rare cytotypes being more
 isolated and greater gene flow expected from rare into common cytotypes.
 In polyploid complexes, both the specific cytotypes in contact and local
 cytotype frequency, likely reflecting spatial demography, will influence
 likelihood of gene exchange.
description: Pollinator visitation observations were made visually and were
 collected by hand on paper by T. Miranda-Katz and B. Sutherland. Data were
 then transcribed into a spreadsheet by B. Sutherland. Visitations in which
 only one plant were visited were then removed from the dataset to be
 analyzed. Both raw bout information and processed data for each bout
 (ratios of intra- and intercytotype visitations) are reported.
 Fruit set, Seed set, and Germination data were assessed visually
 and transcribed into a spreadsheet. F1 cytometric data
 was collected using a BD FACSCalibur flow cytometer. Modal value for
 fluorescence for each sample was recorded and compared to either an
 internal or external standard. Modal value/standard ratios were then
 compared to the same ratio for known diploid plants to determine ploidy.
 F1 ploidy, maternal ploidy, ploidy pair, and maternal frequency are
 recorded.
description: Missing values are recorded as "."
 Tabs containing encoded information (i.e. weather type, insect
 type, population, etc) is included in each Excel file as
 relevant.
DOI: 10.5061/dryad.9s4mw6md5
title: Alpha-diversity, Beta-diversity and host-specificity of wood-boring longhorn beetle (Cerambycidea) in Asian tropical and subtropical forests

description: A long-debated question in ecology is whether the hyper-diversity of
 tropical plant-feeding insects is a direct consequence of high tropical
 plant diversity and/or should be attributed to increases in host plant
 specialization. To address this debate, we used the longhorn beetle as a
 study system because their larval stages feed on the xylems of trees and
 lianas. We hypothesized that longhorn beetles show higher host-specificity
 in tropical forests than in other forests; alternatively, the high
 longhorn beetle diversity in the tropics may simply be owing to more
 diverse host plants. We therefore designed an investigation in tropical
 and subtropical forests to test these hypotheses. We adapted several
 analyses (i.e., non-metric multidimensional scaling analysis,
 alpha-diversity, beta-dissimilarity indices comparisons, and variation
 partitioning based on redundancy analysis) to compare the species
 diversity of plants and longhorn beetles in different forests. Our results
 show that both the plant and beetle species in the tropical and
 subtropical areas were well-stratified (non-metric multidimensional
 scaling analysis). The beetle alpha-diversity in the tropical forests was
 significantly higher than that in the subtropical forests, but the plant
 alpha-diversity in the two types of forests were not significantly
 different. The beta-dissimilarity comparison showed that the plant species
 exerted a significant influence on beetle compositional assemblage in the
 tropical forests, but not in the subtropical forests. Finally, the
 variation partitioning results showed that both plant species and plant
 phylogenetic beta-diversity possessed significant explanatory power for
 beetle assemblage composition in the tropical forests, but not in the
 subtropical forests. We conclude that wood-boring longhorn beetles show
 higher host-specificity in tropical forests than in subtropical forests,
 and the high diversity of wood-boring longhorn beetles in tropical forests
 might be explained to a large extent by their more finely partitioned
 diet-breadth.
description: We used the longhorn beetle and plant to study the difference of
 alpha-diversity, beta-diversity and host-pecificity of both taxa in
 tropial and subtropical forest. We hypothesized that longhorn beetles show
 higher host-specificity in tropical forests than in other forests;
 alternatively, the high longhorn beetle diversity in the tropics may
 simply be owing to more diverse host plants. We therefore designed an
 investigation in tropical and subtropical forests to test these
 hypotheses. We adapted several analyses (i.e., non-metric multidimensional
 scaling analysis, alpha-diversity, beta-dissimilarity indices comparisons,
 and variation partitioning based on redundancy analysis) to compare the
 species diversity of plants and longhorn beetles in different
 forests.
DOI: 10.5061/dryad.v9s4mw6sm
title: Data from: Divergent lineages in a semi-arid mallee species, Eucalyptus behriana, correspond to a major geographic break in south-eastern Australia

description: Aim: To infer relationships between populations of the semi-arid, mallee
 eucalypt, Eucalyptus behriana, to build hypotheses regarding evolution of
 major disjunctions in the species’ distribution and to expand
 understanding of the biogeographical history of south-eastern Australia.
 Location: South-eastern Australia Taxon: Eucalyptus behriana (Myrtaceae,
 Angiospermae) Methods: We developed a large dataset of anonymous genomic
 loci for 97 samples from 11 populations of E. behriana using double digest
 restriction site associated DNA sequencing (ddRAD-seq), to determine
 genetic relationships between the populations. These relationships, along
 with species distribution models, were used to construct hypotheses
 regarding environmental processes that have driven fragmentation of the
 species’ distribution. Results: Greatest genetic divergence was between
 populations on either side of the Lower Murray Basin. Populations west of
 the Basin showed greater genetic divergence between one another than the
 eastern populations. The most genetically distinct population in the east
 (Long Forest) was separated from others by the Great Dividing Range. A
 close relationship was found between the outlying northernmost population
 (near West Wyalong) and those in the Victorian Goldfields despite a large
 disjunction between them. Conclusions: Patterns of genetic variation are
 consistent with a history of vicariant differentiation of disjunct
 populations. We infer that an early disjunction to develop in the species
 distribution was that across the Lower Murray Basin, an important
 biogeographical barrier separating many dry sclerophyll plant taxa in
 south-eastern Australia. Additionally, our results suggest that the
 western populations fragmented earlier than the eastern ones, with this
 fragmentation, both west and east of the Murray Basin, likely tied to
 climatic changes associated with glacial-interglacial cycles, although
 major geological events including uplift of the Mount Lofty Ranges and
 basalt flows in the Newer Volcanics Province possibly also played a role.
description: Supplementary tables.docx - Tables containing
 information on Ipyrad parameters and individual samples in the dataset
 used for analyses 
 Concatenated_alignment.nex - nexus format concatenated alignment
 of all loci generated by ipyrad used in phylogenetic analyses
 
 One_SNP_per_5000bp_Egrandis_reference_genepop.txt - Genepop
 format file containing filtered SNP dataset containing no more than one
 SNP per 5000 bp of the E. grandis reference genome used to assemble loci
 in ipyrad.
DOI: 10.15468/dl.pend6h
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is one of (PDD 86101, PDD 91670, K-M000948317, PDD 126706, K-M000951854, K-M000769752, K-M000773865, K-M000235258, K-M000068145, K-M000083221, PDD 90182)"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002441-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2280gb5pq
title: The effect of face masks and sunglasses on identity and expression recognition with super-recognisers and typical observers

description: Face masks present a new challenge to face identification and emotion
 recognition in Western cultures. Here we present the results of three
 experiments that test the effect of masks, and also the effect of
 sunglasses (an occlusion that individuals tend to have more experience
 with) on 1) familiar face matching, 2) unfamiliar face matching, and 3)
 emotion recognition. Occlusion reduced accuracy in all three tasks, with
 most errors in the mask condition, however, there was little difference in
 performance for faces in masks compared to faces in sunglasses.
 Super-recognisers (SRs), people who are highly skilled at matching
 unconcealed faces, were impaired by occlusion, but at the group level,
 performed with higher accuracy than controls on all tasks. Results inform
 psychology theory with implications for everyday interactions, security,
 and policing in a mask-wearing society.
description: Data was collected using the online platform Qualtrics. Data file
 includes the response of each participant on each test item. 
description: Group names: Prolific = 'unpracticed control',
 DB_Control = 'practiced control', DB_SR = super-recognisers.
 Please refer to ReadeMe file.
DOI: 10.5061/dryad.r4xgxd296
title: Towards genetic modification of plant-parasitic nematodes: Delivery of macromolecules to male germlines and expression of exogenous mRNA in second stage juveniles

description: Plant-parasitic nematodes are a current and future threat to food
 security, causing an estimated 100 billion USD in crop losses each year.
 The most problematic are the obligate sedentary endoparasites (primarily
 root knot nematodes and cyst nematodes). Progress in understanding their
 biology is held back by a lack of tools for functional genetics. Forward
 genetics is largely restricted to studies of natural variation in
 populations, and reverse genetics is entirely reliant on RNA interference.
 There is an expectation that the development of functional genetic tools
 would accelerate progress in plant-parasitic nematology, and hence the
 development of novel control solutions. Here, we develop some of the
 foundational biology required to deliver a functional genetic "tool
 kit” in plant-parasitic nematodes. We characterise the gonads of male
 Heterodera schachtii and Meloidogyne hapla in the context of
 spermatogenesis. We test and optimise various methods for the delivery,
 expression, and/or detection of exogenous nucleic acids in plant-parasitic
 nematodes. We demonstrate that delivery of macromolecules to cyst and root
 knot nematode male germlines is difficult but possible. Similarly, we
 demonstrate the delivery of oligonucleotides to root knot nematode
 gametes. Finally, we develop a transient expression system in
 plant-parasitic nematodes by demonstrating the delivery and expression of
 exogenous mRNA encoding various reporter genes throughout the body of H.
 schachtii juveniles using lipofectamine-based transfection. We anticipate
 these developments to be independently useful, and, taken together, will
 expedite the development of genetic modification protocols for sedentary
 endoparasitic nematodes, and ultimately catalyze research on a group of
 nematodes that threaten global food security.
description: Gene sequences of <em>H. schachtii</em>
DOI: 10.5061/dryad.6m905qfxk
title: Data from: Reported U.S. Wild Game Consumption and Greenhouse Gas Emissions Savings

description: These two tables present raw data utilized to calculated greenhouse gas
 savings associated with hunting within the US. Appendix I shows the
 estimated numbers of "big game" animals legally harvested in
 each state and the mean yield from each species. Appendix II shows total
 number of migratory waterfowl harvested in the US and the mean yield for
 each species. Both of these tables refer to the paper "Reported US
 Wild Game Consumption and Greenhouse Gas Emissions Savings" published
 in Human Dimensions of Wildlife.
description: Appendix I was collected from state wildlife management agencies,
 either directly from internet published data or by email request. Appendix
 II was collected by internet published data.
DOI: 10.15468/dl.b4k97v
title: Occurrence Download

description: A dataset containing 34555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "TaxonKey is Chlorophyta"
 ]
}

 The dataset includes 34555 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002442-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ttdz08kvk
title: Data from: The effectiveness of pseudomagic traits in promoting divergence and enhancing local adaptation

description: The first file contains the code necessary to generate figures in the
 style of Fig 1 of the associated manuscript.  These figures show
 the divergence between both ecological traits and mating traits by the
 strength of mating preference.  Different panels correspond to
 different rates of recombination between these loci that control these
 types of traits. Files S1 and S2 are Mathematica versions of the
 corresponding files in the Supplementary Information of the paper.
description: The files are computer programs and mathematical analyses.
description: Program to generate multipanel figures, Files S1 and
 S2 The starting conditions for each genotype can be
 found towards the start of the program, as marked (note that there are
 options so that these can be in terms of genotypes or allele frequencies).
  The precision and parameter values for m and s are set right under the
 subheader "Output".
DOI: 10.5061/dryad.w9ghx3fmf
title: Foraging niche overlap during chick-rearing in the sexually dimorphic Westland petrel

description: Most Procellariform seabirds are pelagic, breed in summer when prey
 availability peaks, and migrate for winter. They also display a dual
 foraging strategy (short and long trips) and sex-specific foraging. The
 Westland petrel Procellaria westlandica, a New Zealand endemic, is one of
 the rare seabirds breeding in winter. Preliminary findings on this large
 and sexually-dimorphic petrel suggest a foraging with no evidence of a
 dual strategy, within a narrow range and with shared areas between sexes.
 To investigate further this unusual strategy, the present study determined
 the fine-scale at-sea behaviours (GPS and accelerometer data loggers) and
 trophic niches (stable isotopes in whole blood) of chick-rearing
 individuals (16 males, 13 females). All individuals foraged on the shelf
 slope of the west coast of New Zealand’s South Island with short, unimodal
 trips. Both sexes foraged at similar intensity without temporal, spatial
 or isotopic niche segregation. These findings suggest the presence of a
 winter prey resource close to the colony, sufficient to satisfy the
 nutritional needs of breeding without intra-specific competition avoidance
 or increased foraging effort. Additional data are needed to assess the
 consistency of foraging niche between the sexes and its reproductive
 outcomes in view of anticipated environmental changes.
description: Individuals were caught in
 accessible burrow nests (one individual per nest), weighed and equipped
 with data loggers. Then, the occupancy of these nests was checked until
 the return of the equipped individuals. At recapture, the data loggers
 were retrieved, and the individual weighed again, morphometrics and blood
 sample taken (whole blood stored in 70% ethanol, for stable isotopes
 analysis and genetic sexing).
description: This study investigated the
 foraging niche of dimorphic males and females Westland petrel during the
 chick-rearing period. At-sea movements were recorded with GPS, behaviours
 and foraging behaviour were recorded with accelerometers, and trophic
 niche was inferred with stable isotopes (carbon, nitrogen). Altogether,
 these fine-scale data allowed to look at the foraging niche used by males
 and females. The
 metada from the birds are provided in the uploaded file “Westland petrels
 individuals metadata”, and the parameters of the tracks in the file
 “Westland petrel tracks parameters”. The way the combined GPS and
 accelerometer data were analysed is described in the uploaded file “GPS
 and accelerometer data code”.