cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13567916.v1
title: 2D random dot motion discrimination task

description: Behavioural data for the <b>2D random dot motion discrimination task</b>.<br>The experiment consists of two parts:1) Parallel staircase procedure2) 6 blocks of random dots task on two axes<br><br>This data has been collected via Prolific recruitment portal with jsPsych and anonymised (eg. profil ids have been removed).<br><br>The folder contains two summary files:<b>summary_a20.csv</b> and <b>summary_a45.csv</b><br>for two angles of the experiment: 20 and 45 degrees between the axes.Each summary file assigns some data gathered about participants<br><br>All the remaining files are encodes in the following way:<br><b>a_.csv</b>For example: <b>a45_44.csv</b> is the data for participants number 44 for condition with 45 degrees angle.Each file contains a table that in rows contains the information about the trial. The utils functions that help you read this data you might find in the repository below.In general the most important columns are: <b>rt</b> (with response time), <b>stimuls</b> (with information displayed on the screen), <b>correct</b> (that encodes whether the right option was chosen), <b>coherence</b> (that informs about the coherence of the dots per axis), <b>stair_coh1</b> and <b>stair_coh2</b> (with values of convergent coherences after staircase procedure).<br><br>The datails of the experiment and data analysis can be found: <i>https://github.com/dokato/2drdk</i>.<br>
DOI: 10.17632/f77p84pbcv
title: SHORYUKEN: An open-source software package for calculating nonlocal exchange interactions in nanowires

description: We present the open-source software package, SHORYUKEN (Streamlined High-level Operations in Real-space to Yield, Understand, and Keep Exchange in Nanowires), for calculating nonlocal exchange interactions in nanowires with arbitrary geometries, sizes, doping densities, and compositions. In addition to enabling new calculations of nonlocal exchange, the SHORYUKEN software package is a significant enhancement of our previous HADOKEN code and includes new algorithmic improvements as well as an improved treatment of surface states for nanowires with intrinsic polarization. Our calculations show that the inclusion of nonlocal exchange can have significant effects on the eigenenergy spectrum, number of occupied states, and distribution of electrons within these nanosystems. The SHORYUKEN software package is the first open-source code for calculating nonlocal exchange to predict electron gas formation in nanowire systems with arbitrary cross-sectional geometries.
DOI: 10.6084/m9.figshare.11346893.v1
title: Arabidopsis_2029_Maf001_NoFilter

description: Arabidopsis_2029_Maf001_NoFilter
DOI: 10.6084/m9.figshare.12827129.v1
title: Dataset on the effect of Dendrobium officinale dietary fiber on the gut microbiome in high-fat-diet-induced obese mice

description: Obesity and related metabolic syndromes are becoming a major public health problem due to excess dietary fat intake. <i>Dendrobium officinale</i> is a medicine food homology herb ranked as the head of “nine kinds of precious medicinal herbs” in China and exerts multiple health-promoting effects. In this study, mice were fed with standard chow diet (Chow), high-fat diet (HFD) or HFD plus daily administration of <i>D. officinale</i> dietary fiber (DODF, 1.0 g/kg) by intragastric gavage for 11 weeks. To examine the gut microbial changes, a 16S rRNA gene sequencing approach was used to analyze the gut microbiome in fecal samples of mice fed with Chow, HFD and DODF. To investigate the impact of DODF on host metabolism, a <sup>1</sup>H NMR-based metabolomics approach was applied to analyze metabolic changes in feces, serum, and liver. In addition, to elucidate whether the gut flora acts as a causal factor for mediating the efficacies of DODF, we next transferred the faecal microbiota either from DODF-treated or vehicle-treated HFD-fed donor mice (DODF-R and HFD-R) to HFD-induced obese mice for 14 days.
DOI: 10.6084/m9.figshare.14622771.v1
title: Philippines Geomorphic Type Reference Sample

description: This geomorphic reference data is intended for use as a calibration and/or validation data for global scale remote sensing image based classification of coral reef areas. The data is in a vector shapefile format consisting of polygons labelled into one of thirteen coral reef geomorphic classes that include Patch Reef, Plateau, No Reef, Outer Reef Flat, Deep Water, Inner Reef Flat, Back Reef Slope, Deep Lagoon, Terrestrial Reef Flat, Shallow Lagoon, Sheltered Reef Slope, Reef Crest and Reef Slope. <b>Please cite data as:</b> Lyons, M., Canto, R., Borrego-Acevedo, R., Harris, D., Kennedy, E., Kovacs, E., Markey, K., Murray, N., Ordonez Alvarez, A., Phinn, S., Roe, M., Roelfsema, C., Say, C., Tudman, P., C., Wolff, J., Yuwono, D., Bambric, B., Fox, H., Lieb, Z., Asner , G., Knapp , D., Li, J., Harris, B., Larsen, K. & Rice, K. 2021. Philippines Geomorphic Type Reference Sample. University of Queensland. DOI: https://doi.org/10.6084/m9.figshare.14622771 <b>Links to supplementary information:</b> Mapping methods overview (https://allencoralatlas.org/methods/) UQ mapping team web site (https://www.rsrc.org.au/globalreef) Detailed mapping methods description by Lyons et al. (https://doi.org/10.1002/rse2.157) Detailed classification scheme description by Kennedy et al. (https://doi.org/10.1038/s41597-021-00958-z) Detailed reference creation description workflow by Roelfsema et al. (https://doi.org/10.3389/fmars.2021.643381) <b>Funding:</b> Vulcan Inc., (https://vulcan.com) Great Barrier Reef Foundation (https://www.barrierreef.org/) <b>Acknowledgement:</b> This work was initiated and funded primarily through Paul Allen Philanthropies and Vulcan Inc. as part of the Allen Coral Atlas. We acknowledge the late Paul Allen and Ruth Gates for their fundamental vision and drive to enable us to work together on this critical reef mapping problem. Project partners providing financial, service and personnel include: Planet Inc., National Geographic, University of Queensland, Arizona State University, and University of Hawai'i. Significant support has also been provided by Google Inc., Great Barrier Reef Foundation, and Trimble (Ecognition). Contributors to establishing and running the project include: Vulcan Inc. [James Deutsch, Lauren Kickam, Paulina Gerstner, Charlie Whiton, Kirk Larsen, Sarah Frias Torres, Kyle Rice, Eldan Goldenberg, Janet Greenlee]; Planet Inc. [Andrew Zolli, Trevor McDonald, Joe Mascaro, Joe Kington]; University of Queensland [Chris Roelfsema, Stuart Phinn, Emma Kennedy, Mitch Lyons, Nicholas Murray, Doddy Yuwono, Dan Harris, Eva Kovacs, Rodney Borrego, Meredith Roe, Jeremy Wolff, Kathryn Markey, Alexandra Ordonez, Chantal Say, Paul Tudman]; Arizona State University [Greg Asner, Dave Knapp, Jiwei Li, Yaping Xu, Nick Fabina, Heather D'Angelo]; and National Geographic [Helen Fox, Brianna Bambic, Brian Free, Zoe Lieb] and Great Barrier Reef Foundation [Petra Lundgren, Kirsty Bevan, Sarah Castine]. Attributions of contributed field data or maps for the reference sample creation are available at: https://allencoralatlas.org/attribution/
DOI: 10.6084/m9.figshare.19087061.v1
title: Updated List of China's Science and Technology Agreements and related agreements USE ME

description: This list presents China's science and technology agreements and related agreements collected in December 2021. It is not an exhaustive list. Anyone who has agreements to add to the list, please contact Caroline Wagner wagner.911@osu.edu
DOI: 10.6084/m9.figshare.23833881.v2
title: AMF and global change

description: AMF under global change
DOI: 10.6084/m9.figshare.24099501.v6
title: Supplementary Table S2 for Genotype-Phenotype Correlations in Thirty Japanese Patients with Congenital Hypothyroidism Attributable to <i>TG</i> Defects

description: Supplementary Table showing detailed clinical information on each patients with <i>TG</i> variants described in the current paper by Tanase-Nakao K.
DOI: 10.6084/m9.figshare.7672325.v1
title: Additional file 4: of Exploitation of reverse vaccinology and immunoinformatics as promising platform for genome-wide screening of new effective vaccine candidates against Plasmodium falciparum

description: The PPC of predicted T cell epitopes for 5 genome derived predicted antigenic adhesions (GDPAA). (XLSX 9â kb)
DOI: 10.17632/3k5bwbccph
title: Synthetic Rice Leaf Disease

description: This data consists of raw uncategorized synthetic images of rice leaf disease. They contain 50,001 samples of *.png images with a uniform size of 256*256. The data can be used to improve object detection or classification of rice leaf diseases.
DOI: 10.17632/ywdntwktt6
title: Figure 6 for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: Mutations in the Ppk14 signaling pathway suppress css1-3
DOI: 10.6084/m9.figshare.11775126.v4
title: blueJeans-PNAS2020

description: Data associated with "Assessing the Reliability of a Clothing-Based Forensic Identification"
DOI: 10.6084/m9.figshare.22573822.v1
title: Animal Resilience

description: Supplementary Material for the JDS paper of "Genomic-based genetic parameters for resilience across lactations in North American Holstein cattle based on variability in daily milk yield records".
DOI: 10.6084/m9.figshare.24966216.v3
title: Soil chemical property data

description: Soil chemical properties at each sampling point.
DOI: 10.6084/m9.figshare.27941196.v1
title: Wesper Lab home sleep studies used for training and testing the Wesper autoscoring algorithm for the detection of central apnea events

description: The data is organized into two main folders: one containing Wesper HSAT studies and the other containing Wesper Clinical studies. The Wesper HSAT folder is further divided into two subfolders: one for training sessions and another for testing sessions. Each session is stored in its own folder, and within each session folder, there are two files: a CSV file containing the signals and another CSV file containing the scores.<br><br>Research Description:<br><br>Sleep apnea, a disorder characterized by repetitive disruptions in breathing during sleep, is traditionally diagnosed through in-laboratory polysomnography (PSG). Despite the growing popularity of non-invasive home sleep apnea tests (HSATs) due to their convenience, these devices often encounter limitations in accurately detecting central sleep apnea (CSA). These challenges stem from factors such as suboptimal signal quality in home environments, inaccuracies in surrogate signal interpretations, and variability in manual scoring. To address these issues, this study evaluated a novel HSAT device, Wesper Lab, which utilizes direct respiratory signal measurements and integrates artificial intelligence (AI) for automated scoring. Specifically, the accuracy of the Wesper Autoscoring Algorithm (WAA) in identifying central respiratory events, including the Central Apnea Index (CAI), was compared to Manual Human Scoring (WAA).<br>
DOI: 10.6084/m9.figshare.24225724.v2
title: Meaningful life among transgender women

description: This is a data file with data collected from 127 transgender women in India. It includes data related to the problems faced by them as well as the level of meaning they experience in their lives.<br>The data has been used in the paper- https://doi.org/10.1080/15332985.2024.2446156Please cite this data source and the paper if you find it useful.<b>Original Manuscript (Pre-print): https://drive.google.com/file/d/1RW4UruMyhRVl1X8F_wB-YotPm3dtvRj9/view?usp=drive_link</b>
DOI: 10.6084/m9.figshare.28840337.v1
title: Loucas Senior Thesis Data 2025

description: The order, family, genus, and OTU (unique label for taxa) of each taxon along with their respective tolerance levels, functions, and number of individuals found as well as the site, habitat, and replicate number they were found in.
DOI: 10.6084/m9.figshare.29142512.v2
title: <b>The Pre-Physical Origin of the Standard Model: A Unified Creation Theory</b>

description: This pre-print introduces a radical new perspective on cosmic origins, positing that even "nothingness" is a created entity, born from the semantic divergence of balanced, zero-net-energy photon pairs. Our theory unifies concepts of creation and dissolution, offering a pre-physical foundation for the Standard Model where physics itself emerges from informational properties and recursive processes. We challenge the traditional Big Bang singularity, proposing a directional injection of energy into a preconditioned substrate. This work invites critical discussion on the nature of existence, the role of linguistic interpretation in physics, and the ultimate boundaries of cosmological inquiry.
DOI: 10.6084/m9.figshare.5128024.v1
title: Supplementary Material for: Assessment of the HNF1B Score as a Tool to Select Patients for <b><i>HNF1B</i></b> Genetic Testing

description: <b><i>Background/Aims:</i></b> Diagnosing hepatocyte nuclear factor 1β (HNF1B)-related disease is a challenging task due to the phenotypic variability and frequent absence of a family history. An HNF1B score has recently been developed to help select appropriate patients for genetic testing with a negative predictive value (NPV) of 99%. We aimed at testing the clinical utility of this score in a large number of referrals for <i>HNF1B</i> genetic testing to the UK diagnostic testing service for the <i>HNF1B</i> gene. <b><i>Methods:</i></b> An HNF1B score was assigned for 686 UK referrals for <i>HNF1B</i> genetic testing using clinical information available at referral. The performance of the score was evaluated by receiver-operating characteristic curve analysis. The relative discriminatory ability of different clinical features for making a genetic diagnosis of HNF1B-related disease were estimated in the UK dataset alone and pooled with French data. <b><i>Results:</i></b> The HNF1B score discriminated between patients with and without a mutation reasonably well with an area under the curve of 0.72. Applying the suggested cut-off score of ≥8 gave a NPV of 85%. In a pooled analysis, antenatal renal abnormalities, renal hyperechogenicity and cysts were discriminatory in children, whereas renal hypoplasia and cysts were discriminatory in adults. Pancreatic abnormalities were discriminatory in both, whereas other extra-renal characteristics had a large effect size only in adults. <b><i>Conclusion:</i></b> The HNF1B score was discriminatory for <i>HNF1B</i> mutations in a large cohort of individuals tested in a single UK centre. The lower NPV (85 vs. 99%) reduces its clinical utility in selecting patients for <i>HNF1B</i> genetic testing, although validation in a prospective cohort is required.
DOI: 10.6084/m9.figshare.22682329.v1
title: Supplementary Material for: Changes in Visual Long-term Potentiation Show Preserved Cyclicity in Human Females Taking Combined Oral Contraceptives

description: Introduction: The combined oral contraceptive pill (COC) is often employed to address physical and neurological symptoms in menstrual cycle-related disorders by suppressing shifts in endogenous gonadal hormone fluctuations. Symptom persistence, especially in the lead up to the hormone free interval (HFI) suggests an underlying neurobiological mechanism of preserved cycling. Our study utilised a non-invasive method of visually inducing long-term potentiation (LTP) to index changes in neural plasticity in the absence of hormonal fluctuations. Methods: Visually induced LTP was recorded using electroencephalography in 24 healthy female COC users across three sessions; day 3 and 21 during active hormone pills, and day 24 during the HFI. The Daily Record of the Severity of Problems (DRSP) questionnaire tracked premenstrual symptoms. Dynamic causal modelling (DCM) was used to elucidate the neural connectivity and receptor activity changes associated with LTP across different days of COC. Results: Visually induced LTP was greater on day 21 than day 3 (p=0.011) and was localised to the P2 visually evoked potential. There was no effect of the HFI (day 24) on LTP. DCM of differences between day 3 and 21 showed changes to inhibitory interneuronal gating of LTP in cortical layer VI. The DRSP only showed a significant increase in symptoms in the HFI, meaning the LTP result appeared more sensitive to cyclicity. Conclusions: This study provides objective evidence of preserved cyclicity in COC users through enhanced LTP on day 21 compared to day 3 of a 28-day COC regimen, indicating that relatively higher excitation in the brain despite peripheral gonadal suppression may underlie and exacerbate menstrual cycle-related disorders.
DOI: 10.6084/m9.figshare.27991634.v1
title: Source data for graphs and charts in article "Geometric barriers impacted rupture processes and stress releases of the 2023 Kahramanmaraş, Türkiye, earthquake doublet"

description: The finite fault models and the source spectra for the 2023 Kahramanmaraş, Türkiye, earthquake doublet.
DOI: 10.6084/m9.figshare.28324133.v1
title: Primary Assembly

description: Primary assembly of Lepidodermella squamata.
DOI: 10.17632/85sm6wfmnb
title: Data for: Feeding Behaviors among Incident Cases of Schizophrenia in a Psychiatric Hospital: Association with Dimensions of Psychopathology and Social Support

description: The attached questionnaire was designed by the researchers' to evaluate various nutritional outcomes among incident cases of schizophrenia.
DOI: 10.17632/8hm59ryzb8
title: CLAS: A Database for Cognitive Load, Affect and Stress Recognition

description: We present the overall design and the implementation of the CLAS dataset, a multimodal resource which was purposely developed in support of research and technology development (RTD) activities oriented towards the automated recognition of some specific states of mind. Although the particular focus of our research is on the states of mind associated with negative emotions, mental strain and high cognitive effort, the CLAS dataset could offer an adequate support to research of a wider scope, such as general studies on attention assessment, cognitive load assessment, emotion recognition, as well as stress detection. The dataset consists of synchronized recordings of physiological signals, such as Electrocardiography (ECG), Plethysmography (PPG), ElectroDermal Activity (EDA), as well as accelerometer data, and metadata of 62 healthy volunteers, which were recorded while involved in three interactive tasks and two perceptive tasks. The interactive tasks aim to elicit different types of cognitive effort and included solving sequences of Math problems, Logic problems and the Stroop test. The perceptive tasks make use of images and audio-video stimuli, purposely selected to evoke emotions in the four quadrants of the arousal-valence space. The joint analysis of success rates in the interactive tasks and the information acquired through the questionnaire and the physiological recordings enables for a multifaceted evaluation of specific states of mind. These results are important for the advancement of research on efficient human-robot collaborations and general research on intelligent human-machine interaction interfaces.
DOI: 10.6084/m9.figshare.16670572.v1
title: Data Fig S4

description: Fig S4D and EFig S4HFig S4GFigS4K
DOI: 10.6084/m9.figshare.19620975.v1
title: Sheehan et al (2022) MetUM output

description: MetUM output associated with Sheehan et al (2022), On the influence of the Bay of Bengal's sea surface temperature gradients on rainfall of the South Asian monsoon
DOI: 10.6084/m9.figshare.21407379.v3
title: Functions and data used in "The clustering of spatially associated species unravels patterns in tropical tree species distributions"

description: Codes and data related to the study "The clustering of spatially associated species unravels patterns in tropical tree species distributions"
Published at Ecosphere: https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecs2.4589
DOI: https://doi.org/10.1002/ecs2.4589
DOI: 10.6084/m9.figshare.27961674.v1
title: <b>Long-COVID is associated with increased absenteeism from work</b>

description: Long-COVID, defined as COVID-19 symptoms persisting for more than 3 months, may lead to persistent health issues requiring extensive medical care. Despite its long-term health impact, the economic impact of long-COVID remains understudied. This study examined whether individuals with long-COVID had more missed workdays compared to those without long-COVID. Adults (≥18 years old) with full-time jobs were identified from the 2022 Full-Year Population Characteristics file of the Medical Expenditure Panel Survey (MEPS). A weighted two-part model was used to identify factors associated with missed workdays due to illness. The total population analyzed included 131,685,516 adults (unweighted n=8,210), with an average (SD) age of 43 (14) years. Among them, 46% were female and 62% were non-Hispanic White. Approximately 7% of the population experienced long-COVID. Individuals with long-COVID reported an average of 8 days missed from work (SD: 12 days), while those without long-COVID reported an average of 4 days missed (SD: 9 days). The two-part model revealed that individuals with long-COVID had 2.54 more missed workdays compared to those without long-COVID (p &lt; 0.01), after controlling for relevant covariables. These results underscore significant productivity losses associated with long-COVID, highlighting the need for policymakers and employers to implement effective strategies to address this condition.
DOI: 10.6084/m9.figshare.4224207.v1
title: Supplementary Material for: Cell-Derived Microparticles in Patients with Type 2 Diabetes Mellitus: a Systematic Review and Meta-Analysis

description: <i>Background/Aims: </i>The aim of this study was to assess the association between circulating cell-derived microparticles (MPs) and type 2 diabetes mellitus (T2DM). <i>Methods: </i>A literature search was performed systematically in PubMed and Embase to identify available case-control or cross-sectional studies that compared different types of cell-derived MPs in patients with T2DM and non-diabetic controls. Pooled standardized mean differences (SMDs) of each MP type were pooled using meta-analysis. <i>Results: </i>Forty-eight studies involving 2,460 patients with T2DM and 1,880 non-diabetic controls were included for systematic review and 34 of which were included for quantitative study by meta-analysis. In the overall analysis, the levels of circulating total MPs (TMPs), platelet-derived MPs (PMPs), monocyte-derived MPs (MMPs) and endothelium-derived MPs (EMPs) were significantly higher in T2DM patients than those in controls (TMPs: SMD, 0.64; 95%CI, 0.12∼1.15; P=0.02; PMPs: SMD, 1.19; 95%CI, 0.88∼1.50; P &lt;0.00001; MMPs: SMD, 0.92; 95%CI, 0.66∼1.17; P &lt;0.00001; EMPs: SMD, 0.73; 95%CI, 0.50∼0.96; P &lt;0.00001). Meanwhile, no significant difference was shown in leukocyte-derived MPs (LMPs) level between diabetic and non-diabetic groups (SMD, 0.37; 95%CI, -0.15∼0.89; P=0.17). <i>Conclusions: </i>The counts of TMPs, PMPs, MMPs and EMPs elevated in patients with T2DM. And cell-derived MPs may play a role in the pathogenesis of T2DM.
DOI: 10.17632/pgzcggrbbv
title: Dataset towards influence factors study of Vietnamese youth's behavioral intention to use the IoT services at retail stores 

description: The dataset was collected from +1,000 Vietnamese youngsters' perspectives on intention to adopt the IoT services when shopping at retail stores.  The online survey of the questionnaire was distributed via online platforms such as Facebook groups, Email, etc from December 2021 to January 2022.