cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/jkvftnpr5j.3
title: Dataset for Multimodal Perception of Prominence in Spontaneous Speech: A Methodological Proposal using Mixed Models and AIC

description: Data, and video and audio files of spontaneous speech to study the multimodal perception of prominence
DOI: 10.17632/y8wwtmxxzg.1
title: Data for: Gender-Based Differential Item Functioning in the Cannabis-Associated Problems Questionnaire: A Replication and Extension

description: This data set includes 4,053 cannabis using adults (aged 18 and over). This data was used to conduct a DIF analysis on items of the Cannabis-Associated Problems Questionnaire (CAPQ). Our analyses revealed that 2 items of the CAPQ evidenced significant gender bias.
DOI: 10.17632/22pv7d64kg.2
title: Simulations for lower bound of process capability index

description: Computer simulation using Excel to compare several methods for the estimation of the lower bound of process capability index. (Notice that it can take between 10 and 15 min. to open up the file).
DOI: 10.17632/6wm5hssy3g.1
title: Y.T., SUCLA2-coupled regulation of GLS succinylation and activity counteracts oxidative stress of tumor cells

description: Glutaminase regulates glutaminolysis for cancer cell proliferation. However, the mechanism underlying glutaminase activity regulation is largely unknown. Here we demonstrated that the kidney-type glutaminase (GLS) is highly expressed in human pancreatic ductal adenocarcinoma (PDAC) specimens with correspondingly upregulated glutamine dependence for PDAC cell proliferation. In addition to regulation at its expression level, GLS K311 is succinylated by succinyl-CoA in a succinyl-CoA concentration-dependent manner, leading to enhanced GLS oligomerization and activity. Upon oxidative stress, succinyl-CoA synthetase ADP-forming  subunit (SUCLA2) phosphorylated by p38 MAP kinase at S79 dissociates from GLS, resulting in enhanced GLS K311 succinylation. Activated GLS increases glutaminolysis and production of NADPH and glutathione, thereby counteracting oxidative stress-increased reactive oxygen species and apoptosis and promoting tumor cell proliferation and tumor growth in mice. In addition, the levels of SUCLA2 pS79 and GLS K311 succinylation, which were mutaully correlated, were markedly higher in the PDAC specimens than those in the adjacent normal tissue samples and positively correlated with the advanced stages of PDAC and inversely correlated with overall survival durations of the patients. Our findings uncover a critical regulation of GLS activity by SUCLA2-coupled GLS succinylation regulation and underscore the regulatory role of metabolites in glutaminolysis and PDAC development.
DOI: 10.17632/s679knnnh4.1
title: List of nuclear reactions after 8,9,10B(t,*) nuclear reactions.

description: List of nuclear reactions after 8,9,10B(t,*) nuclear reactions by GEANT4 Monte Carlo code.
DOI: 10.25345/c5968d
title: MassIVE MSV000084759 - Klebsiella pneumoniae proteome analysis comparing the response to antimicrobial peptide2
title: The rise of resistance to antimicrobial compounds by microbes has imposed new challenges to the scientific community, leading to the need of the discovery, design and production of novel antimicrobial compounds. In this regard, among the intensively investigated novel antimicrobial compounds are the antimicrobial peptides (AMPs) as they represent a hopeful alternative to face with the microbial resistance problem. Accordingly, the number of novel synthetic AMPs reported has increased in recent years. Among these, the AMP PaDBS1R1 appear to be a promising antimicrobial agent as exerted a potent antibacterial activity against several bacterial pathogens, including antibiotic- resistant Klebsiella pneumoniae. However, little is known about how the pathogens respond to PaDBS1R1 challenge as well as how this peptide exerts its antimicrobial activity. Therefore, the understanding of these aspects is vital to achieve a successful implementation of PaDBS1R1 as a new therapeutic agent in the future. In this regard, many microbiological, biochemical and biophysical approaches have been implemented to study the pathogen-AMPs system including high-throughput omics approaches. Therefore, the present study explored a label-free quantitative shotgun proteomics approach to gain new insight in K. pneumoniae response to the novel AMP PaDBS1R1. Our results suggest that K. pneumoniae remodeled its metabolic machinery when challenge with a sub-inhibitory concentration of PaDBS1R1. Furthermore, the bacteria appear to build-up a complex anti-PaDBS1R1 response which involves several mechanisms of defense including capsule production, lipopolysaccharides (LPS) modification, efflux pumps and sigma factor E stress response system activation. Moreover, PaDBS1R1 appears to promote bacterial DNA damages and continuous exposing to sub-inhibitory concentrations of the peptide favored the emergence of bacteria with reduced susceptibility to PaDBS1R1.
DOI: 10.5281/zenodo.3598515
title: The Rapid Rise of Fraktur, DHD 2020, Data

description: This CSV file contains the data used in "The rapid rise of Fraktur", by Weichselbaumer et al., at the DHd2020 conference. The four columns of this file are: Book ID from the Bayerische Staatsbibliothek Publication year, extracted from the books' metadata The language of the books (here: always German) The main font group of the book, as recognised by an <strong>automatic</strong> method The CSV file provides information for a total of 85'223 books. Their pages 10 to 19 have been classified, and the books have been retained in this file if at least 6 of the pages were attributed the same main font group. Only books in German and for which the printing date is known have been considered. Some of the results have been checked by experts as the font was unusual for the date of the book (see corresponding publication for more details).
DOI: 10.17632/jp9m2nmpry.2
title: Heparan sulfate co-immobilized with cRGD ligands and BMP2 on biomimetic platforms promotes BMP2 mediated osteogenic differentiation. Figure 5

description: We knocked down 1 or 3 integrins on C2C12 cells and we plated these cells on biomimetic platforms presenting immobilized heparan sulfate (iHS) with adsorbed BMP2 (aBMP2) compared to the conditions with soluble BMP2 (sBMP2) and BMP2 directly immobilized (iBMP2). The knocking down reduced p-SMAD 1/5/9 levels at short time points (1.5 hour) and ALP expression 3 days after plating. p-SMAD 1/5/9 remained low on cRAD platforms, however the expression of ALP was up-regulated on cRAD platforms presenting iHS and aBMP2. Figure 5a: Cells were silenced for either 1 or 3 integrins and plated on cRGD and cRAD platforms presenting sBMP2, iHS, iHS + aBMP2 and iBMP2, and fixed after 1.5 h for p-SMAD1/5/9 staining. Representative immunofluorescence images shown the intensity of p-SMAD1/5/9 translocated into cell nuclei on all different conditions and cell-type. The quantification of the triplicate expriment is shown in figure 5b of Sefkow-Werner et al. 2020 Matrix Biol. (submitted). Figure 5c: Representative ALP staining of C2C12 cells scrambled, silenced for 1 (si1) and 3 (si3) integrins, plated on cRGD or cRAD platforms co-presenting sBMP2, iHS, iHS+aBMP2 and iBMP2 and fixed after 3 days. The quantification of the triplicate expriment is shown in figure 5d of Sefkow-Werner et al. 2020 Matrix Biol. (submitted).
DOI: 10.17632/p6d4m9gprw.2
title: Heparan sulfate co-immobilized with cRGD ligands and BMP2 on biomimetic platforms promotes BMP2 mediated osteogenic differentiation. Figure 1 c and g

description: - BMP2-SMAD signaling is enhanced by increasing the surface density of cRGD peptides likely through increased engagement of integrins at the cell membrane. The phosphorylation of SMAD 1/5/9 is not enhanced if C2C12 cells are plated on increasing cRAD peptide concentration. Figure 1c: Increasing surface concentration of cRGD, and therefore the integrins engagement at the membrane, enhances cell response to sBMP2. Western blot analysis of p-SMAD 1/5/9 levels in C2C12 cells plated on surfaces presenting three different cRGD surface concentrations and stimulated with sBMP2 (6 nM). As control, C2C12 cells were plated on platforms presenting only SAv and on a plastic petri-dish (TCPS). One hour after plating cells were lysed and the level of p-SMAD 1/5/9 plotted and normalized to the housekeeping gene GAPDH. Two experiments realized and used for quantification, as well as the experiment shown in Figure 1c of the paper Sefkow-Werner et al., 2020, Matrix Biol (submitted), are shown here. The quantification of the three independent experiments shows the average ± SEM in Figure 1d of the cited paper. Figure 1g: Western blot of p-SMAD 1/5/9 expression of C2C12 cells plated for one hour on cRAD platforms and exposed to the same concentration of sBMP2 (6 nM). As control, C2C12 were plated on a plastic petri-dish (TCPS) with or without sBMP2. One hour after plating cells were lysed and the level of p-SMAD 1/5/9 plotted and normalized to the housekeeping gene GAPDH. The two experiments realized and used, together with the blot shown in Figure 1g of the paper Sefkow-Werner et al., 2020, Matrix Biol (submitted), are shown here. The quantification of the average ± SEM of the three independent experiments is shown in Figure 1h.
DOI: 10.17632/p6d4m9gprw.3
title: Heparan sulfate co-immobilized with cRGD ligands and BMP2 on biomimetic platforms promotes BMP2 mediated osteogenic differentiation. Figure 1 c and g

description: - BMP2-SMAD signaling is enhanced by increasing the surface density of cRGD peptides likely through increased engagement of integrins at the cell membrane. The phosphorylation of SMAD 1/5/9 is not enhanced if C2C12 cells are plated on increasing cRAD peptide concentration. Figure 1c: Increasing surface concentration of cRGD, and therefore the integrins engagement at the membrane, enhances cell response to sBMP2. Western blot analysis of p-SMAD 1/5/9 levels in C2C12 cells plated on surfaces presenting three different cRGD surface concentrations and stimulated with sBMP2 (6 nM). As control, C2C12 cells were plated on platforms presenting only SAv and on a plastic petri-dish (TCPS). One hour after plating cells were lysed and the level of p-SMAD 1/5/9 plotted and normalized to the housekeeping gene GAPDH. Two experiments realized and used for quantification, as well as the experiment shown in Figure 1c of the paper Sefkow-Werner et al., 2020, Matrix Biol (submitted), are shown here. The quantification of the three independent experiments shows the average ± SEM in Figure 1d of the cited paper. Figure 1g: Western blot of p-SMAD 1/5/9 expression of C2C12 cells plated for one hour on cRAD platforms and exposed to the same concentration of sBMP2 (6 nM). As control, C2C12 were plated on a plastic petri-dish (TCPS) with or without sBMP2. One hour after plating cells were lysed and the level of p-SMAD 1/5/9 plotted and normalized to the housekeeping gene GAPDH. The two experiments realized and used, together with the blot shown in Figure 1g of the paper Sefkow-Werner et al., 2020, Matrix Biol (submitted), are shown here. The quantification of the average ± SEM of the three independent experiments is shown in Figure 1h.
DOI: 10.17632/z4rrs6cjzt.1
title: Comparison of Successful and Unsuccessful Learners in an Online Learning Context Using Learning Analytics

description: This article compares successful learners with unsuccessful learners who participated in a TOEIC (Test of English for International Communication) online learning in South Korea. After participating in an online and offline blended College TOEIC course for 15 weeks, their online behaviors were scrutinized through learning analytics, along with their self-report data. The current study uncovered differences between these two groups regarding four aspects: how often they accessed the website; to what extent they completed their assignments; which day of the week they completed assignments; to what extent they differed in learning outcomes. The findings of this research can be utilized when preparing or managing an online learning environment.
DOI: 10.5281/zenodo.3598514
title: The Rapid Rise of Fraktur, DHD 2020, Data

description: This CSV file contains the data used in "The rapid rise of Fraktur", by Weichselbaumer et al., at the DHd2020 conference. The four columns of this file are: Book ID from the Bayerische Staatsbibliothek Publication year, extracted from the books' metadata The language of the books (here: always German) The main font group of the book, as recognised by an <strong>automatic</strong> method The CSV file provides information for a total of 85'223 books. Their pages 10 to 19 have been classified, and the books have been retained in this file if at least 6 of the pages were attributed the same main font group. Only books in German and for which the printing date is known have been considered. Some of the results have been checked by experts as the font was unusual for the date of the book (see corresponding publication for more details).
DOI: 10.17632/3bgcpd2kbj.1
title: Citizenship ceremonies as an opportunity for behaviour change: a quasi-experiment with London councils

description: pilot carried out with London local councils in 2018. This quasi-experiment involved varying the offer made to new citizens at their citizenship ceremonies would lead to greater willingness to carry out social acts. The councils tried out whether having the volunteering service present and conveying behavioural insights in addition to the volunteering offer make a difference to civic intentions. Outcomes across control, volunteering, and behavioural insights ceremonies were measured by a telephone survey carried out four to six weeks after the ceremonies. In total 240 telephone interviews were carried out across the six local authorities and three ceremony types, a 50 per cent response rate. Research instruments may be found here: https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3362302
DOI: 10.17632/ct7d3mb5nj.2
title: F-test

description: F-test based on computer simulations and actual coverage.
DOI: 10.17632/b23zr3tj39.1
title: A role of histone acetylation in the regulation of circadian rhythm in ants

description: Data for the manuscript "A role of histone acetylation in the regulation of circadian rhythm in ants"
DOI: 10.17632/sbt2p5dh3t.1
title: Complete genome sequence of Bacillus amyloliquefaciens KCTC 18343P(=MBE1028)

description: Bacillus amyloliquefaciens KCTC18343P(=MBE1283) isolated from Makgeolli, Korean traditional rice wine, strongly inhibits the growth of food and plant pathogens. A complete genome sequence of B. amyloliquefaciens KCTC18343P is presented in this report. The genome is 3,979,925 bp in size and harbors 3,856 genes. The BioProject has been deposited at DDBJ/EMBL/GenBank. The GenBank accession numbers are PRJNA301202 for the BioProject, CP013727 for the chromosome, and NZ_CP013728 for the plasmid.
DOI: 10.5281/zenodo.3567149
title: A method for generating coherent spatially explicit maps of seasonal palaeoclimates from site-based reconstructions

description: Reconstruction of climate anomalies in southern Europe for the Last Glacial Maximum (LGM, ca 21,000 years ago), made by combining pollen based reconstructions (from Bartlein et al. 2011) and averaged outputs of LGM simulations from the 3rd round of the Palaeoclimate Model Intercomparison Project (PMIP, Braconnot et al. 2011), under a variational data assimilation technique. Reconstructions made using this technique are designed to be used for data-model comparison, specifically against the results of PMIP4. The dataset consists of 6 variables: moisture index (the ratio precipitation and equilibrium evapotranspiration), mean annual precipitation (mm), mean annual temperature (degrees C), mean temperature of the coldest month (degrees C), mean temperature of the warmest month (degrees C), growing degree days above 5 degrees C (day degrees C). The standard deviation of these variables is also given.
DOI: 10.5281/zenodo.3567150
title: A method for generating coherent spatially explicit maps of seasonal palaeoclimates from site-based reconstructions

description: Reconstruction of climate anomalies in southern Europe for the Last Glacial Maximum (LGM, ca 21,000 years ago), made by combining pollen based reconstructions (from Bartlein et al. 2011) and averaged outputs of LGM simulations from the 3rd round of the Palaeoclimate Model Intercomparison Project (PMIP, Braconnot et al. 2011), under a variational data assimilation technique. Reconstructions made using this technique are designed to be used for data-model comparison, specifically against the results of PMIP4. The dataset consists of 6 variables: moisture index (the ratio precipitation and equilibrium evapotranspiration), mean annual precipitation (mm), mean annual temperature (degrees C), mean temperature of the coldest month (degrees C), mean temperature of the warmest month (degrees C), growing degree days above 5 degrees C (day degrees C). The standard deviation of these variables is also given.
DOI: 10.5286/isis.e.rb2010811
title: Low temperature structural changes of complex ferroelectric La2Ti2O7

description: La2Ti2O7 is part of an intriguing family of layered perovskite-related materials which display an unusual type of ferroelectricity. In contrast to standard ABO3 perovskites (in which octahedral rotations alone are non-polar) the ferroelectricity in La2Ti2O7 and relatives can be driven solely by rotations and tilts of the TiO6 octahedra. However, the crystal structures of these materials are very complex and we have uncovered evidence which suggests that the currently assigned space group is incorrect. Therefore, we propose to perform a detailed structural study of La2Ti2O7 to low temperature to confirm the ambient temperature space group and characterise its structural behaviour to low temperature with the aid of symmetry mode analysis with the goal of better understanding its ferroelectricity. This will also be of importance for the wider material class which is currently under-studied.
DOI: 10.5286/isis.e.rb2010811-1
title: Low temperature structural changes of complex ferroelectric La2Ti2O7

description: La2Ti2O7 is part of an intriguing family of layered perovskite-related materials which display an unusual type of ferroelectricity. In contrast to standard ABO3 perovskites (in which octahedral rotations alone are non-polar) the ferroelectricity in La2Ti2O7 and relatives can be driven solely by rotations and tilts of the TiO6 octahedra. However, the crystal structures of these materials are very complex and we have uncovered evidence which suggests that the currently assigned space group is incorrect. Therefore, we propose to perform a detailed structural study of La2Ti2O7 to low temperature to confirm the ambient temperature space group and characterise its structural behaviour to low temperature with the aid of symmetry mode analysis with the goal of better understanding its ferroelectricity. This will also be of importance for the wider material class which is currently under-studied.
DOI: 10.21227/qsyz-zv20
title: Combining machine learning and metabolomics to identify weight gain biomarkers

description: This dataset was used in the article "Combining machine learning and metabolomics to identify weight gain biomarkers, 2019, Flávia Luísa Dias-Audibert, Luiz Claudio Navarro, Diogo Noin de Oliveira, Jeany Delafiori, Carlos Fernando Odir Rodrigues Melo, Tatiane Melina Guerreiro, Mohamed Ziad Dabaja, Flávia Troncon Rosa, Diego Lima Petenuci, Maria Angelica Ehara Watanabe, Licio Augusto Velloso, Anderson Rezende Rocha, Rodrigo Ramos Catharino" submitted to Frontiers Bioengineering and Biotechnology with review finalized on 22 Nov 2019.Article abstract:Weight gain is a metabolic disorder that often culminates in the development of obesity and other comorbidities such as diabetes. Obesity is characterized by the development of a chronic, subclinical systemic inflammation, and is regarded as a remarkably important factor that contributes to the development of such comorbidities. Therefore, laboratory methods that allow the identification of subjects at higher risk for severe weight-associated morbidity are of utter importance, considering the health and safety of populations. This contribution analyzed the plasma of 180 Brazilian individuals, equally divided into a eutrophic control group and case group, to assess the presence of biomarkers related to weight gain, aiming at characterizing the phenotype of this population. Samples were analyzed by mass spectrometry and most discriminant features were determined by a machine learning approach using Random Forest algorithm. Five biomarkers related to the pathogenesis and chronicity of inflammation in weight gain were identified. Two metabolites of arachidonic acid were upregulated in the case group, indicating the presence of inflammation, as well as two other molecules related to dysfunctions in the cycle of nitric oxide (NO) and increase in superoxide production. Finally, a fifth case group marker observed in this study may indicate the trigger for diabetes in overweight and obesity individuals. The use of mass spectrometry combined withmachine learning analyses to prospect and characterize biomarkers associated with weight gain will pave the way for elucidating potential therapeutic and prognostic targets.
DOI: 10.5519/qd.z21sklka
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (433819 records)
DOI: 10.17632/h6g4dkw6sw.1
title: FEDS paper raw images

description: Raw images corresponding to Figures 3 and 4 of FEDS paper
DOI: 10.17632/rts645s4f6.1
title: Data for: Efficacy of Costing in Banks

description: Any ideal exercise under strategic planning is to be done only on the constructed average balance sheet matched with the actual P&L over a period. But, mostly all the banks derive projections only on the available audited terminal balance sheet and the P&L items. In fact, all banks may evolve for a system generated average balance sheet preferably on a fortnightly/monthly/quarterly/half yearly/yearly basis so as to assess the performance still in a better way. This may help the banks, as a ready reckoner, to arrive a short term or long term planning budget .
DOI: 10.7910/dvn/mkx1tu/pw4cdi
title: SPEED_Data_Manual_2019.pdf

description: :unav
DOI: 10.7910/dvn/h2ky73
title: Dyslipidemia as a risk factor for liver fibrosis progression in a multicentric population with non-alcoholic steatohepatitis.

description: Raw data from the manuscript: "Dyslipidemia as a risk factor for liver fibrosis progression in a multicentric population with non-alcoholic steatohepatitis."
DOI: 10.7910/dvn/h2ky73/190td1
title: Data Base-NASH 07-26-2018.xls

description: :unav
DOI: 10.7910/dvn/h2ky73/ipm4cd
title: Data Base-NASH 07-26-2018.tab

description: :unav
DOI: 10.17632/cp3j37kxpt.2
title: Chi-Square simulations in Minitab

description: Chi-Square simulations in Minitab
DOI: 10.5066/p9kc9du8
title: Bathymetry, Stage-Area, and Stage-Volume Tables for the San Antonio Reservoir, California, 2018

description: This dataset is associated with the following Scientific Investigations Report: Marineau, M.D., Wright, S.A, and Lopez, J.V., 2020, Storage capacity and sedimentation characteristics of the San Antonio Reservoir, California, 2018: U.S. Geological Survey Scientific Investigations Report 2019-5151, 34 p., https://doi.org/10.3133/sir20195151.
DOI: 10.5281/zenodo.3597487
title: New Methods in Monte Carlo Lightning Simulations: data for inhomogeneous simulations

description: This is the ncdf file output from the WRF supercell simulation. This file is produced using the WRF version 3.9.1.1 with the storm electrification package. This data is used in the article "New Methods in Monte Carlo Lightning Simulations" to create an inhomogeneous microphysical profile for simulations.