cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3937732
title: Replication data for: Conservation Gaps in Traditional Vegetables Native to Europe and Fennoscandia

description: Vegetables are rich in vitamins and other micronutrients and are important crops for healthy diets and diversification of the food system, and many traditional (also termed underutilized or indigenous) species may play a role. The current study analyzed 35 vegetables with a European region of diversity with the effort to map the conservation status in Fennoscandia and beyond. We mapped georeferenced occurrences and current genebank holdings based on global databases and conducted conservation gaps analysis based on representativeness scores in situ and ex situ. Out of the 35 target species, 19 got at a high priority score for further conservation initiatives, while another 14 species got a medium priority score. We identified a pattern where traditional vegetables are poorly represented in genebank holdings. This corresponds well to a lack of attention in the scientific community measured in number of published papers. Considering the grand challenges ahead in terms of climate change, population growth and demand for sustainability, traditional vegetables deserve greater attention. Our contribution is to provide a basis for conservation priorities among the identified vegetables species native to Fennoscandia.
DOI: 10.6084/m9.figshare.4719667
title: Simulated Data

description: The simulated mock communities.
DOI: 10.6084/m9.figshare.4719667.v1
title: Simulated Data 1

description: The simulated mock communities.
DOI: 10.6084/m9.figshare.4719667.v2
title: Simulated Data

description: The simulated mock communities.
DOI: 10.6084/m9.figshare.4719667.v3
title: Simulated Data

description: The simulated mock communities.
DOI: 10.6084/m9.figshare.4719667.v5
title: Simulated Data

description: The simulated mock communities.
DOI: 10.6084/m9.figshare.4719667.v4
title: Simulated Data

description: The simulated mock communities.
DOI: 10.15468/w94p3d
title: Chalcidoidea (Hymenoptera) obtained from common reed, Phragmites australis (Cav.) Trin. ex Steud. (Poaceae) in Iran with new records and descriptions of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lotfalizadeh, Hossein, Karimpour, Younes, Delvare, Gérard, Rasplus, Jean-Yves (2020): Chalcidoidea (Hymenoptera) obtained from common reed, Phragmites australis (Cav.) Trin. ex Steud. (Poaceae) in Iran with new records and descriptions of two new species. European Journal of Taxonomy 710: 1-35, DOI: https://doi.org/10.5852/ejt.2020.710
DOI: 10.6084/m9.figshare.4719358
title: DavidFaecal_Ananke.h5

description: HDF5 file for use with Ananke-UI (https://github.com/beiko-lab/ananke-ui). Contains time-series clusters of 16S rRNA gene abundances from faecal samples sampled over one year, as well as taxonomic classifications and sequence identity-based clusters.
DOI: 10.6084/m9.figshare.4719199
title: Data from: Aboveground resilience to species loss but belowground resistance to nitrogen addition in a montane plant community

description: Data from: Aboveground resilience to species loss but belowground resistance to nitrogen addition in a montane plant community, Read, Quentin D., Henning, Jeremiah A., Classen, Aimée T., Sanders, Nathan J. Journal of Plant Ecology. DOI: 10.1093/jpe/rtx015<br>Data are contained in comma-separated value (CSV) files.Please see readme.txt for column metadata.
DOI: 10.6084/m9.figshare.4719199.v1
title: Data from: Aboveground resilience to species loss but belowground resistance to nitrogen addition in a montane plant community

description: Data from: Aboveground resilience to species loss but belowground resistance to nitrogen addition in a montane plant community, Read, Quentin D., Henning, Jeremiah A., Classen, Aimée T., Sanders, Nathan J. Journal of Plant Ecology. DOI: 10.1093/jpe/rtx015<br>Data are contained in comma-separated value (CSV) files.Please see readme.txt for column metadata.
DOI: 10.6084/m9.figshare.4715344
title: PAgenomes150316.txt

description: <i>P. aeruginosa</i> genomes downloaded from NCBI http://www.ncbi.nlm.nih.gov/genome/genomes/187, March 15th 2016
DOI: 10.6084/m9.figshare.4715302
title: Tools and methods in genomic data analysis: TGAC - Repositive Main Survey Results

description: Final results from the preliminary survey found here: https://figshare.com/articles/TGAC_-_Repositive_Preliminary_Survey_Results/3503873<br>After that preliminary survey we added some additional questions to gain further insights and then opened the survey up to a wider audience. 50 people responded and in the blog post I will discuss our findings from this survey and our final conclusions. <br>
DOI: 10.6084/m9.figshare.4715365
title: GI database P. aeruginosa

description: Overview of known genomic islands in Pseudomonas aeruginosa
DOI: 10.6084/m9.figshare.4715365.v1
title: GI database P. aeruginosa

description: Overview of known genomic islands in Pseudomonas aeruginosa
DOI: 10.6084/m9.figshare.4715302.v1
title: Tools and methods in genomic data analysis: TGAC - Repositive Main Survey Results

description: Final results from the preliminary survey found here: https://figshare.com/articles/TGAC_-_Repositive_Preliminary_Survey_Results/3503873<br>After that preliminary survey we added some additional questions to gain further insights and then opened the survey up to a wider audience. 50 people responded and in the blog post I will discuss our findings from this survey and our final conclusions. <br>
DOI: 10.6084/m9.figshare.4715281
title: Supplementary Material for: Genomic Characterization of a Metastatic Alveolar Rhabdomyosarcoma Case Using FISH Studies and CGH+SNP Microarray Revealing FOXO1-PAX7 Rearrangement with MYCN and MDM2 Amplification and RB1 Region Loss

description: Rhabdomyosarcomas (RMS) are rare, heterogeneous, soft tissue sarcomas and a common type of childhood malignancy with a distinct histomorphology. At the molecular level, alveolar rhabdomyosarcoma (ARMS), a subtype of RMS, harbors a signature genetic makeup characterized by specific translocations. The type of translocation and associated genetic aberrations correlate with disease progression, hence we used multiple molecular modalities including high-resolution array comparative genomic hybridization to explore the oncogenic gene fusion and associated copy number variations in a case of metastatic ARMS. We describe a case where traditional cytogenetic and molecular methods yielded inconclusive results in detecting the <i>FOXO1 </i>gene rearrangement. However, microarray analysis identified the essential <i>FOXO1-PAX7</i> aberration and additional submicroscopic genomic alterations, including amplification of <i>MYCN</i> and <i>MDM2</i> and deletion of <i>RB1</i>.
DOI: 10.6084/m9.figshare.16815564.v1
title: Additional file 6 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation

description: Additional file 6: Table S5 DEGs results and GO term of PMA, QKI5, QKI5 M1 RNA-seq
DOI: 10.6084/m9.figshare.16815573
title: Additional file 9 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation

description: Additional file 9: Table S8 Primers and oligos, antibodies and reagents used in this study
DOI: 10.6084/m9.figshare.16815573.v1
title: Additional file 9 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation

description: Additional file 9: Table S8 Primers and oligos, antibodies and reagents used in this study
DOI: 10.6084/m9.figshare.16815716.v1
title: Additional file 3 of Genome-wide identification and expression profile analysis of trihelix transcription factor family genes in response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]

description: Additional file 3 Table S3. Seven pairs of segmental duplicated S. bicolor trihelix genes. (XLS 22 kb)
DOI: 10.6084/m9.figshare.23633902.v1
title: Epimutation detection in the clinical context: guidelines and a use case from a new Bioconductor package

description: Epimutations are rare alterations of the normal DNA methylation pattern at specific loci, which can lead to rare diseases. Methylation microarrays enable genome-wide epimutation detection, but technical limitations prevent their use in clinical settings: methods applied to rare diseases’ data cannot be easily incorporated to standard analyses pipelines, while epimutation methods implemented in R packages (<i>ramr</i>) have not been validated for rare diseases. We have developed <i>epimutacions</i>, a Bioconductor package (https://bioconductor.org/packages/release/bioc/html/epimutacions.html). <i>epimutacions</i> implements two previously reported methods and four new statistical approaches to detect epimutations, along with functions to annotate and visualize epimutations. Additionally, we have developed an user-friendly Shiny app to facilitate epimutations detection (https://github.com/isglobal-brge/epimutacionsShiny) to non-bioinformatician users. We first compared the performance of <i>epimutacions</i> and <i>ramr</i> packages using three public datasets with experimentally validated epimutations. Methods in <i>epimutacions</i> had a high performance at low sample sizes and outperformed methods in <i>ramr</i>. Second, we used two general population children cohorts (INMA and HELIX) to determine the technical and biological factors that affect epimutations detection, providing guidelines on how designing the experiments or preprocessing the data. In these cohorts, most epimutations did not correlate with detectable regional gene expression changes. Finally, we exemplified how <i>epimutacions</i> can be used in a clinical context. We run <i>epimutacions</i> in a cohort of children with autism disorder and identified novel recurrent epimutations in candidate genes for autism. Overall, we present <i>epimutacions</i> a new Bioconductor package for incorporating epimutations detection to rare disease diagnosis and provide guidelines for the design and data analyses.
DOI: 10.5525/gla.researchdata.1306
title: Data for 'Two-Photon Interference LiDAR Imaging'

description: Data used in the manuscript. Full details are included in the readme file.
DOI: 10.6084/m9.figshare.12103434
title: Scene-15

description: Dataset Source: http://www.cvr.ai.uiuc.edu/ponce_grp/data/
DOI: 10.6084/m9.figshare.14196708
title: Additional file 1 of A prediction model based on DNA methylation biomarkers and radiological characteristics for identifying malignant from benign pulmonary nodules

description: Additional file 1.
DOI: 10.6084/m9.figshare.14196708.v1
title: Additional file 1 of A prediction model based on DNA methylation biomarkers and radiological characteristics for identifying malignant from benign pulmonary nodules

description: Additional file 1.
DOI: 10.6084/m9.figshare.25152707
title: Base de datos_Dengue

description: Dengue is an important thing to needs evaluate
DOI: 10.6084/m9.figshare.25152707.v1
title: Base de datos_Dengue

description: Dengue is an important thing to needs evaluate
DOI: 10.6084/m9.figshare.14721030
title: SP1-induced lncRNA ZFPM2 antisense RNA 1 (ZFPM2-AS1) aggravates glioma progression via the miR-515-5p/Superoxide dismutase 2 (SOD2) axis

description: Glioma is a common life-threatening tumor with high malignancy and high invasiveness. LncRNA ZFPM2 antisense RNA 1 (ZFPM2-AS1) was confirmed to be implicated in numerous tumors, while its biological function and mechanism have not been thoroughly understood in glioma. The gene expression was measured by RT-qPCR. Cell proliferation, cell cycle, and cell apoptosis of glioma cells were validated by CCK-8, colony formation, flow cytometry and TUNEL assays. The effect of ZFPM2-AS1 on tumor growth was verified by <i>in vivo</i> assay. The exploration on ZFPM2-AS1-mediated mechanism was carried out via ChIP, luciferase reporter, and RIP assays. In the present study, ZFPM2-AS1 was demonstrated as a highly-expressed lncRNA in glioma tissues and cells. ZFPM2-AS1 silencing suppressed cell proliferation and cell cycle, but facilitated cell apoptosis. In addition, the inhibitive effect of silenced ZFPM2-AS1 was also observed in tumor growth. Furthermore, we found that SP1 interacted with ZFPM2-AS1 promoter to transcriptionally activate ZFPM2-AS1 expression. Moreover, ZFPM2-AS1 was identified as a competing endogenous RNA (ceRNA) for miR-515-5p to target SOD2. Rescue assays verified that SOD2 overexpression partially abolished the suppressive impact of ZFPM2-AS1 silencing on glioma cell growth. In conclusion, this study corroborated the regulatory mechanism of SP1/ZFPM2-AS1/miR-515-5p/SOD2 axis in glioma, indicating that targeting ZFPM2-AS1 might be an effective way to treat glioma.
DOI: 10.25625/8lzp1h/2lsw2u
title: fitness_growth_raw_data.tab

description: :unav
DOI: 10.25625/8lzp1h/2vwetj
title: fitness_survival.tab

description: :unav
DOI: 10.25625/8lzp1h/vofi5p
title: dual-choice.tab

description: :unav
DOI: 10.25625/8lzp1h/xprgbm
title: no-choice_test_raw_data.tab

description: :unav
DOI: 10.25625/8lzp1h/zek4qy
title: CO2_mycelium.tab

description: :unav
DOI: 10.25625/8lzp1h/3fvesg
title: volatiles_raw_data.tab

description: :unav
DOI: 10.25625/8lzp1h/mqqdsr
title: fitness_reproduction.tab

description: :unav
DOI: 10.25625/8lzp1h/ozaaen
title: CO2_mycelium.tab

description: :unav
DOI: 10.25625/8lzp1h/r0edxb
title: fitness_reproduction.tab

description: :unav
DOI: 10.25625/8lzp1h/xgxytx
title: olfactometer_results_wild_type_vs_complement.tab

description: :unav
DOI: 10.25625/8lzp1h/xroegu
title: volatile_analysis.xlsx

description: :unav
DOI: 10.25625/8lzp1h/0rjvmk
title: volatiles_statistics.tab

description: :unav
DOI: 10.25625/8lzp1h/4fmuih
title: olfactometer_results_wild_type_vs_wild_type_raw_data.tab

description: :unav
DOI: 10.25625/8lzp1h/55jzqd
title: no-choice_test_statistics.tab

description: :unav
DOI: 10.25625/8lzp1h/flpqxl
title: fitness_growth_statistics.tab

description: :unav
DOI: 10.25625/8lzp1h/q1cwuh
title: olfactometer_results_wild_type_vs_wild_type.tab

description: :unav
DOI: 10.25625/8lzp1h/rnc13d
title: olfactometer_results_wild_type_vs_knock-out.tab

description: :unav
DOI: 10.25625/8lzp1h/ay4s6w
title: olfactometer_results_wild_type_vs_complement_statistics.tab

description: :unav
DOI: 10.25625/8lzp1h/fckfz1
title: olfactometer_results_wild_type_vs_knock-out_statistics.tab

description: :unav
DOI: 10.25625/8lzp1h/o0p4ro
title: olfactometer_results_wild_type_vs_knock-out_raw_data.tab

description: :unav
DOI: 10.25625/8lzp1h/pjrakq
title: olfactometer_results_wild_type_vs_complement_raw_data.tab

description: :unav
DOI: 10.25625/8lzp1h/uaqupr
title: olfactometer_results_wild_type_vs_wild_type_statistics.tab

description: :unav
DOI: 10.25625/8lzp1h/g91pkf
title: fitness_reproduction_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/hy11fq
title: fitness_growth_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/nerqlf
title: fitness_survival_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/olrnzz
title: CO2_mycelium_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/syhoaa
title: acceptace_test_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/wd56h0
title: olfactometer_wild_type_vs_complement_statistics.R

description: :unav
DOI: 10.25625/8lzp1h
title: Ecological functions of fungal sesquiterpenes in the food preference and fitness of soil collembolans

description: Raw data for publication "Ecological functions of fungal sesquiterpenes in the food preference and fitness of soil collembolans"
DOI: 10.25625/8lzp1h/3xgnql
title: dual-choice.R

description: :unav
DOI: 10.25625/8lzp1h/oqkmg8
title: olfactometer_wild_type_vs_wild_type_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/xcyqzy
title: olfactometer_wild_type_vs_knock-out_statistics.R

description: :unav
DOI: 10.25625/8lzp1h/z2q4yn
title: volatiles_statistics.R

description: :unav
DOI: 10.6084/m9.figshare.14721030.v1
title: SP1-induced lncRNA ZFPM2 antisense RNA 1 (ZFPM2-AS1) aggravates glioma progression via the miR-515-5p/Superoxide dismutase 2 (SOD2) axis

description: Glioma is a common life-threatening tumor with high malignancy and high invasiveness. LncRNA ZFPM2 antisense RNA 1 (ZFPM2-AS1) was confirmed to be implicated in numerous tumors, while its biological function and mechanism have not been thoroughly understood in glioma. The gene expression was measured by RT-qPCR. Cell proliferation, cell cycle, and cell apoptosis of glioma cells were validated by CCK-8, colony formation, flow cytometry and TUNEL assays. The effect of ZFPM2-AS1 on tumor growth was verified by <i>in vivo</i> assay. The exploration on ZFPM2-AS1-mediated mechanism was carried out via ChIP, luciferase reporter, and RIP assays. In the present study, ZFPM2-AS1 was demonstrated as a highly-expressed lncRNA in glioma tissues and cells. ZFPM2-AS1 silencing suppressed cell proliferation and cell cycle, but facilitated cell apoptosis. In addition, the inhibitive effect of silenced ZFPM2-AS1 was also observed in tumor growth. Furthermore, we found that SP1 interacted with ZFPM2-AS1 promoter to transcriptionally activate ZFPM2-AS1 expression. Moreover, ZFPM2-AS1 was identified as a competing endogenous RNA (ceRNA) for miR-515-5p to target SOD2. Rescue assays verified that SOD2 overexpression partially abolished the suppressive impact of ZFPM2-AS1 silencing on glioma cell growth. In conclusion, this study corroborated the regulatory mechanism of SP1/ZFPM2-AS1/miR-515-5p/SOD2 axis in glioma, indicating that targeting ZFPM2-AS1 might be an effective way to treat glioma.
DOI: 10.6084/m9.figshare.12103614
title: Caltech-101

description: Dataset Source:http://www.vision.caltech.edu/Image_Datasets/Caltech101/
DOI: 10.6084/m9.figshare.12103629
title: Caltech-256

description: Dataset Source:https://authors.library.caltech.edu/7694/<br>
DOI: 10.6084/m9.figshare.12103638
title: Corel-10

description: Dataset Source:http://wang.ist.psu.edu/~jwang/test1.tar<br>
DOI: 10.6084/m9.figshare.25152716
title: 20240207_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25152716.v1
title: 20240207_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.16818320
title: Solvability of a regular polynomial vector optimization problem without convexity

description: In this paper, we study the solvability of a nonconvex regular polynomial vector optimization problem on a nonempty closed set. We introduce regularity conditions for the polynomial vector optimization problem and study their properties and characterizations. Under the regularity conditions, we establish the nonemptiness and boundedness of the solution sets of the problem. As a by-product, we infer two Frank–Wolfe type theorems for the nonconvex polynomial vector optimization problem. Finally, we investigate the solution stability of the problem.
DOI: 10.6084/m9.figshare.20488449.v1
title: Additional file 4 of Systematic transcriptome profiling of pyroptosis related signature for predicting prognosis and immune landscape in lower grade glioma

description: Additional file 4: Table S3. List of immune cell-related metagenes and immune function-related immunomodulators.
DOI: 10.5281/zenodo.10624810
title: Canuto Espárrago - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Antonio Ledesma Hernández, "Canuto Espárrago", 1903

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.5281/zenodo.10624811
title: Canuto Espárrago - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Antonio Ledesma Hernández, "Canuto Espárrago", 1903

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.6084/m9.figshare.20488487
title: Additional file 5 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 5: Table S5. The explained genetic variance of SNPs within significant windows for LMA.
DOI: 10.6084/m9.figshare.16815708.v1
title: Additional file 4 of Comprehensive mapping of binding hot spots of SARS-CoV-2 RBD-specific neutralizing antibodies for tracking immune escape variants

description: Additional file 4: Table S5. The information of epitope targeted by RBD-specific mAbs.
DOI: 10.6084/m9.figshare.20488487.v1
title: Additional file 5 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 5: Table S5. The explained genetic variance of SNPs within significant windows for LMA.
DOI: 10.6084/m9.figshare.20488496
title: Additional file 8 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 8: Table S8. Significant KEGG pathways and GO terms associated with growth traits. (P &lt; 0.05).
DOI: 10.6084/m9.figshare.20488493
title: Additional file 7 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 7: Table S7. The explained genetic variance of SNPs within significant windows for LMP.
DOI: 10.6084/m9.figshare.20488499.v1
title: Additional file 9 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 9: Table S9. Identified CNVRs compared with previous studies.
DOI: 10.6084/m9.figshare.20488449
title: Additional file 4 of Systematic transcriptome profiling of pyroptosis related signature for predicting prognosis and immune landscape in lower grade glioma

description: Additional file 4: Table S3. List of immune cell-related metagenes and immune function-related immunomodulators.
DOI: 10.6084/m9.figshare.20488472
title: Additional file 1 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 1: Table S1. Description of 695 CNVRs detected in the porcine genome.
DOI: 10.6084/m9.figshare.20488490
title: Additional file 6 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 6: Table S6. The explained genetic variance of SNPs within significant windows for LMD.
DOI: 10.6084/m9.figshare.20488472.v1
title: Additional file 1 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 1: Table S1. Description of 695 CNVRs detected in the porcine genome.
DOI: 10.6084/m9.figshare.20488499
title: Additional file 9 of A composite strategy of genome-wide association study and copy number variation analysis for carcass traits in a Duroc pig population

description: Additional file 9: Table S9. Identified CNVRs compared with previous studies.