cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3564201.v1
title: Appendix C. Genetic and geographic distance and their relationships for 16 populations of Desmognathus fuscus sampled in the Washington D.C.–Baltimore metropolitan region.

description: Genetic and geographic distance and their relationships for 16 populations of Desmognathus fuscus sampled in the Washington D.C.–Baltimore metropolitan region.
DOI: 10.17632/5z29m63xpz.1
title: Efficacy of a second IL-17 inhibitor in patients with psoriasis: a systematic review and meta-analysis - Supplementary

description: Supplemental material for Efficacy of a second IL-17 inhibitor in patients with psoriasis: a systematic review and meta-analysis including: Supplementary figure 1. PRISMA flow chart Supplementary Table 1. Characteristics of included studies.
DOI: 10.6084/m9.figshare.3564195
title: Appendix D. Pairwise effective migration rate matrices.

description: Pairwise effective migration rate matrices.
DOI: 10.6084/m9.figshare.3564195.v1
title: Appendix D. Pairwise effective migration rate matrices.

description: Pairwise effective migration rate matrices.
DOI: 10.6084/m9.figshare.3564186
title: Appendix A. Figures showing the species-level movement distances calculated from the recapture data, observed yearly reproductive effort for individuals of each species from the field study, PCA biplot with confidence ellipses for phylogenetic relatedness at the family level, apparent survival estimates (Φ) shown against the log(Y+1) distance (benchmark) moved for each species and probability of moving a relatively long distance (ψ) as estimated using RMark, and movement estimates...

description: Figures showing the species-level movement distances calculated from the recapture data, observed yearly reproductive effort for individuals of each species from the field study, PCA biplot with confidence ellipses for phylogenetic relatedness at the family level, apparent survival estimates (Φ) shown against the log(Y+1) distance (benchmark) moved for each species and probability of moving a relatively long distance (ψ) as estimated using RMark, and movement estimates (benchmark, ψ) shown against fecundity for each species. Evidence for a reproduction-movement trade-off is not statistically significant.
DOI: 10.6084/m9.figshare.3564186.v1
title: Appendix A. Figures showing the species-level movement distances calculated from the recapture data, observed yearly reproductive effort for individuals of each species from the field study, PCA biplot with confidence ellipses for phylogenetic relatedness at the family level, apparent survival estimates (Φ) shown against the log(Y+1) distance (benchmark) moved for each species and probability of moving a relatively long distance (ψ) as estimated using RMark, and movement estimates...

description: Figures showing the species-level movement distances calculated from the recapture data, observed yearly reproductive effort for individuals of each species from the field study, PCA biplot with confidence ellipses for phylogenetic relatedness at the family level, apparent survival estimates (Φ) shown against the log(Y+1) distance (benchmark) moved for each species and probability of moving a relatively long distance (ψ) as estimated using RMark, and movement estimates (benchmark, ψ) shown against fecundity for each species. Evidence for a reproduction-movement trade-off is not statistically significant.
DOI: 10.6084/m9.figshare.3564180
title: Appendix A. Temperature and leaf nitrogen affect performance of plant species at range overlap.

description: Temperature and leaf nitrogen affect performance of plant species at range overlap.
DOI: 10.6084/m9.figshare.3564180.v1
title: Appendix A. Temperature and leaf nitrogen affect performance of plant species at range overlap.

description: Temperature and leaf nitrogen affect performance of plant species at range overlap.
DOI: 10.6084/m9.figshare.3564177
title: Appendix A. Model documentation of carbon sequestration in litterfall without climate and flooding parameters.

description: Model documentation of carbon sequestration in litterfall without climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564177.v1
title: Appendix A. Model documentation of carbon sequestration in litterfall without climate and flooding parameters.

description: Model documentation of carbon sequestration in litterfall without climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564174
title: Appendix B. Model documentation of carbon sequestration in litterfall including climate and flooding parameters.

description: Model documentation of carbon sequestration in litterfall including climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564171
title: Appendix C. Model documentation of carbon sequestration in fine roots without climate and flooding parameters.

description: Model documentation of carbon sequestration in fine roots without climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564174.v1
title: Appendix B. Model documentation of carbon sequestration in litterfall including climate and flooding parameters.

description: Model documentation of carbon sequestration in litterfall including climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564171.v1
title: Appendix C. Model documentation of carbon sequestration in fine roots without climate and flooding parameters.

description: Model documentation of carbon sequestration in fine roots without climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564168
title: Appendix D. Model documentation of carbon sequestration in fine roots with the mean annual temperature included.

description: Model documentation of carbon sequestration in fine roots with the mean annual temperature included.
DOI: 10.6084/m9.figshare.3564168.v1
title: Appendix D. Model documentation of carbon sequestration in fine roots with the mean annual temperature included.

description: Model documentation of carbon sequestration in fine roots with the mean annual temperature included.
DOI: 10.6084/m9.figshare.3564165
title: Appendix E. Model documentation of carbon sequestration in fine roots including the Danube River water level between low and mean river water level during the current growing season (RNWMWGS).

description: Model documentation of carbon sequestration in fine roots including the Danube River water level between low and mean river water level during the current growing season (RNWMWGS).
DOI: 10.6084/m9.figshare.3564165.v1
title: Appendix E. Model documentation of carbon sequestration in fine roots including the Danube River water level between low and mean river water level during the current growing season (RNWMWGS).

description: Model documentation of carbon sequestration in fine roots including the Danube River water level between low and mean river water level during the current growing season (RNWMWGS).
DOI: 10.6084/m9.figshare.3564162
title: Appendix F. Model documentation of carbon sequestration in fine roots including the Danube River water level between mean and 10-yearly river water level during the current growing season (MWHWS10GS).

description: Model documentation of carbon sequestration in fine roots including the Danube River water level between mean and 10-yearly river water level during the current growing season (MWHWS10GS).
DOI: 10.6084/m9.figshare.3564162.v1
title: Appendix F. Model documentation of carbon sequestration in fine roots including the Danube River water level between mean and 10-yearly river water level during the current growing season (MWHWS10GS).

description: Model documentation of carbon sequestration in fine roots including the Danube River water level between mean and 10-yearly river water level during the current growing season (MWHWS10GS).
DOI: 10.6084/m9.figshare.3564159
title: Appendix G. Model documentation of carbon sequestration in fine roots including the Danube River water level &gt;10-yearly river water level during the previous growing season (X.HWSGS.1).

description: Model documentation of carbon sequestration in fine roots including the Danube River water level &gt;10-yearly river water level during the previous growing season (X.HWSGS.1).
DOI: 10.6084/m9.figshare.3564159.v1
title: Appendix G. Model documentation of carbon sequestration in fine roots including the Danube River water level &gt;10-yearly river water level during the previous growing season (X.HWSGS.1).

description: Model documentation of carbon sequestration in fine roots including the Danube River water level &gt;10-yearly river water level during the previous growing season (X.HWSGS.1).
DOI: 10.6084/m9.figshare.3564156
title: Appendix H. Model documentation of carbon sequestration in aboveground woody biomass without climate and flooding parameters.

description: Model documentation of carbon sequestration in aboveground woody biomass without climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564153
title: Appendix I. Model documentation of carbon sequestration in aboveground woody biomass including climate and flooding parameters.

description: Model documentation of carbon sequestration in aboveground woody biomass including climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564153.v1
title: Appendix I. Model documentation of carbon sequestration in aboveground woody biomass including climate and flooding parameters.

description: Model documentation of carbon sequestration in aboveground woody biomass including climate and flooding parameters.
DOI: 10.6084/m9.figshare.3564150
title: Appendix J. Model documentation of total carbon sequestration in riparian forest Formula: Overall carbon sequestration ~ Distance to upstream boundary of the study area (DISTUP) + (1 | Site/Year).

description: Model documentation of total carbon sequestration in riparian forest Formula: Overall carbon sequestration ~ Distance to upstream boundary of the study area (DISTUP) + (1 | Site/Year).
DOI: 10.6084/m9.figshare.3564150.v1
title: Appendix J. Model documentation of total carbon sequestration in riparian forest Formula: Overall carbon sequestration ~ Distance to upstream boundary of the study area (DISTUP) + (1 | Site/Year).

description: Model documentation of total carbon sequestration in riparian forest Formula: Overall carbon sequestration ~ Distance to upstream boundary of the study area (DISTUP) + (1 | Site/Year).
DOI: 10.6084/m9.figshare.3564147
title: Appendix K. Means and standard errors (SE) of selected climate, stream flow, hydrological, spatial, and forest stand parameters used for modeling C sequestration in litterfall, fine root, and aboveground biomass (with RNW = Water level duration exceeding ca. 343 days/year; MW = Averaged water level; HSW = Water level duration exceeding ca. 3.6 days/year; approximately bankful discharge).

description: Means and standard errors (SE) of selected climate, stream flow, hydrological, spatial, and forest stand parameters used for modeling C sequestration in litterfall, fine root, and aboveground biomass (with RNW = Water level duration exceeding ca. 343 days/year; MW = Averaged water level; HSW = Water level duration exceeding ca. 3.6 days/year; approximately bankful discharge).
DOI: 10.6084/m9.figshare.3564144
title: Appendix A. Details of social attraction modeling.

description: Details of social attraction modeling.
DOI: 10.6084/m9.figshare.3564147.v1
title: Appendix K. Means and standard errors (SE) of selected climate, stream flow, hydrological, spatial, and forest stand parameters used for modeling C sequestration in litterfall, fine root, and aboveground biomass (with RNW = Water level duration exceeding ca. 343 days/year; MW = Averaged water level; HSW = Water level duration exceeding ca. 3.6 days/year; approximately bankful discharge).

description: Means and standard errors (SE) of selected climate, stream flow, hydrological, spatial, and forest stand parameters used for modeling C sequestration in litterfall, fine root, and aboveground biomass (with RNW = Water level duration exceeding ca. 343 days/year; MW = Averaged water level; HSW = Water level duration exceeding ca. 3.6 days/year; approximately bankful discharge).
DOI: 10.6084/m9.figshare.3564144.v1
title: Appendix A. Details of social attraction modeling.

description: Details of social attraction modeling.
DOI: 10.6084/m9.figshare.3564141
title: Large Genomic Imbalances in Brugada Syndrome (Part 1)

description: The first thirty-two pair of files of a sixty-three cohort of non-related patients of European descent with a definite BrS phenotype and negative genetic results (for Single Nucleotide Variants -SNVs- and small insertions/deletions -indels-)
DOI: 10.6084/m9.figshare.3564141.v1
title: Large Genomic Imbalances in Brugada Syndrome (Part 1)

description: The first thirty-two pair of files of a sixty-three cohort of non-related patients of European descent with a definite BrS phenotype and negative genetic results (for Single Nucleotide Variants -SNVs- and small insertions/deletions -indels-)
DOI: 10.6084/m9.figshare.3564141.v3
title: Large Genomic Imbalances in Brugada Syndrome (Part 1)

description: The first thirty-two pair of files of a sixty-three cohort of non-related patients of European descent with a definite BrS phenotype and negative genetic results (for Single Nucleotide Variants -SNVs- and small insertions/deletions -indels-)
DOI: 10.6084/m9.figshare.3564141.v2
title: Large Genomic Imbalances in Brugada Syndrome (Part 1)

description: The first thirty-two pair of files of a sixty-three cohort of non-related patients of European descent with a definite BrS phenotype and negative genetic results (for Single Nucleotide Variants -SNVs- and small insertions/deletions -indels-)
DOI: 10.6084/m9.figshare.3564138
title: Supplement 1. R code and instructions to implement coincidence rate method for abundance estimation.

description: File List coincidence_functions.R (MD5: 3e84e1aee18a63675a591b86106d7a44) guide_to_computer_code.pdf (MD5: c116f7a3067ffa55be45e3dc6e8a11fb) example_data1.txt (MD5: f4a0fa3b1d63de0c534cef1462545da2) example_data2.txt (MD5: 4a3469bb0cdb2de0c293475bc95d1eaf) example_data3.txt (MD5: 3329f73cf552b84a9354305cc91dba9f) example_data4.txt (MD5: 63df7645a93420a0dce2b3e134c3015f) Description coincidence_functions.R – R code to simulate data, estimate abundance, and conduct power analysis, as described in the main text guide_to_computer_code.pdf – Explains how to use R code example_data1.txt – example Indiana bat data used in text example_data2.txt – example Indiana bat data used in text example_data3.txt – example Indiana bat data used in text example_data4.txt – example Indiana bat data used in text
DOI: 10.6084/m9.figshare.3564138.v1
title: Supplement 1. R code and instructions to implement coincidence rate method for abundance estimation.

description: File List coincidence_functions.R (MD5: 3e84e1aee18a63675a591b86106d7a44) guide_to_computer_code.pdf (MD5: c116f7a3067ffa55be45e3dc6e8a11fb) example_data1.txt (MD5: f4a0fa3b1d63de0c534cef1462545da2) example_data2.txt (MD5: 4a3469bb0cdb2de0c293475bc95d1eaf) example_data3.txt (MD5: 3329f73cf552b84a9354305cc91dba9f) example_data4.txt (MD5: 63df7645a93420a0dce2b3e134c3015f) Description coincidence_functions.R – R code to simulate data, estimate abundance, and conduct power analysis, as described in the main text guide_to_computer_code.pdf – Explains how to use R code example_data1.txt – example Indiana bat data used in text example_data2.txt – example Indiana bat data used in text example_data3.txt – example Indiana bat data used in text example_data4.txt – example Indiana bat data used in text
DOI: 10.6084/m9.figshare.3564135
title: Appendix A. Duration of calf stages (Ts).

description: Duration of calf stages (Ts).
DOI: 10.6084/m9.figshare.3564135.v1
title: Appendix A. Duration of calf stages (Ts).

description: Duration of calf stages (Ts).
DOI: 10.6084/m9.figshare.3564132
title: Appendix B. Respiration rate (Rs).

description: Respiration rate (Rs).
DOI: 10.6084/m9.figshare.3564129
title: Appendix C. Tidal lung volume (Vt), and supplemental tables and figures.

description: Tidal lung volume (Vt), and supplemental tables and figures.
DOI: 10.6084/m9.figshare.3564132.v1
title: Appendix B. Respiration rate (Rs).

description: Respiration rate (Rs).
DOI: 10.6084/m9.figshare.3564126
title: Appendix D. Mass (M).

description: Mass (M).
DOI: 10.6084/m9.figshare.3564126.v1
title: Appendix D. Mass (M).

description: Mass (M).
DOI: 10.6084/m9.figshare.3564123
title: Appendix E. Lactation costs (calf metabolic rate and calf growth costs).

description: Lactation costs (calf metabolic rate and calf growth costs).
DOI: 10.6084/m9.figshare.3564123.v1
title: Appendix E. Lactation costs (calf metabolic rate and calf growth costs).

description: Lactation costs (calf metabolic rate and calf growth costs).
DOI: 10.6084/m9.figshare.3564117
title: Appendix A. Methods for the Tun Mustapha Marine Park fishery model.

description: Methods for the Tun Mustapha Marine Park fishery model.
DOI: 10.6084/m9.figshare.3564117.v1
title: Appendix A. Methods for the Tun Mustapha Marine Park fishery model.

description: Methods for the Tun Mustapha Marine Park fishery model.
DOI: 10.6084/m9.figshare.3564114
title: Supplement 1. Julia language, R scripts, and data files for running simulations with the Tun Mustapha Park model.

description: File List <i>Julia Language code for running simulations</i> Dynamic_optimisation_multiple_runs.jl (MD5: bbfdd827661655716a7055a8ada89bac) Fishmod_Functions.jl (MD5: dd46b17a2797e1a946af24576369d592) FishMod_types.jl (MD5: d25a1899f3944bdfe240e06254c01d80) FishParams_TMP.jl (MD5: 3043b385595906bd89e0ada5578eeaaa) Generate_initial_conditions.jl (MD5: 40c248c35563c41ce1d99af6e0c82960) Opt_Functions.jl (MD5: 4b27c3226a0259d38f48b7a209ce8246) <i>R code for plotting results</i> MR_plots.R (MD5: 27baadd28c4e5f98a9139b870d11c96e) stitchresults.R (MD5: 1501a32eb479349248391231a13a331c) Tradeoffs_plot_Static_Dynamic_TMP.R (MD5: fd0edf6815d6581352cd385e142eb41c) Tradeoffs_plot_static_naive_informed_TMP_SCB.R (MD5: a82c6c5e77ab766cb7d7ed3d83edebaa) <i>Data files</i> AllGridRefsTMPL.csv (MD5: ceebd23d4b88e7b919b49b2d5b003e2a) bath100.asc (MD5: bc76ddcaaea50986a9e774aba1a4d742) HabitatGridRefsTMPL.csv (MD5: 92603a8750926d77c20aac26ca993ec2) HabitatNamesL.csv (MD5: 5908ab79e7b33f10fd91f5c8e8cd2510) HabitatQualityL.csv (MD5: 0c1ec278d961995979782803e0e5b2ee) NHabitatsTMPL.csv (MD5: 5e889ebb8c87d8507c2c7d7a322e40fb) Description Julia language (v0.3.2) was used to run model simulations and optimise marine reserves. Working directories will need to be updated for your computer. R was used for plotting results. <i>Instructions for running the model</i> Fishmod_Functions.jl specifies functions for running the model Opt_Functions.jl specifies functions for optimisations FishMod_types.jl type declarations for the model FishParams_TMP.jl parameters file Generate_initial_conditions.jl Generates initial conditions. Must be run and results saved before optimisations can be conducted. Dynamic_optimisation_multiple_runs.jl Runs static and dynamic optimisations for multiple scenarios and saves results. <i> </i> <i>R code for plotting results</i> stitchresults.R Stitches together results from multiple runs of different habitat protection targets into one file. MR_plots.R Make a map of the marine reserves Tradeoffs_plot_static_naive_informed_TMP_SCB.R Plot static naïve vs. informed tradeoffs. Tradeoffs_plot_Static_Dynamic_TMP.R Plot static informed vs. dynamic tradeoffs. <i>Data files</i> AllGridRefsTMPL.csv Grid cell definitions bath100.asc Depths for the TMP region HabitatGridRefsTMPL.csv Habitat types in each grid cell HabitatNamesL.csv Habitat names HabitatQualityL.csv Maximum coral trout recruitment rate in each habitat type NHabitatsTMPL.csv Number of habitat types <i>Instructions for sensitivity analyses</i> To run our sensitivity analyses with different dispersal distances. Update the disperal distance parameter 'mlarv' in the parameters file and re-run 'Generate_initial_conditions.jl' to get initial conditions and dispersal distance. Then run the optimisations.
DOI: 10.6084/m9.figshare.3564114.v1
title: Supplement 1. Julia language, R scripts, and data files for running simulations with the Tun Mustapha Park model.

description: File List <i>Julia Language code for running simulations</i> Dynamic_optimisation_multiple_runs.jl (MD5: bbfdd827661655716a7055a8ada89bac) Fishmod_Functions.jl (MD5: dd46b17a2797e1a946af24576369d592) FishMod_types.jl (MD5: d25a1899f3944bdfe240e06254c01d80) FishParams_TMP.jl (MD5: 3043b385595906bd89e0ada5578eeaaa) Generate_initial_conditions.jl (MD5: 40c248c35563c41ce1d99af6e0c82960) Opt_Functions.jl (MD5: 4b27c3226a0259d38f48b7a209ce8246) <i>R code for plotting results</i> MR_plots.R (MD5: 27baadd28c4e5f98a9139b870d11c96e) stitchresults.R (MD5: 1501a32eb479349248391231a13a331c) Tradeoffs_plot_Static_Dynamic_TMP.R (MD5: fd0edf6815d6581352cd385e142eb41c) Tradeoffs_plot_static_naive_informed_TMP_SCB.R (MD5: a82c6c5e77ab766cb7d7ed3d83edebaa) <i>Data files</i> AllGridRefsTMPL.csv (MD5: ceebd23d4b88e7b919b49b2d5b003e2a) bath100.asc (MD5: bc76ddcaaea50986a9e774aba1a4d742) HabitatGridRefsTMPL.csv (MD5: 92603a8750926d77c20aac26ca993ec2) HabitatNamesL.csv (MD5: 5908ab79e7b33f10fd91f5c8e8cd2510) HabitatQualityL.csv (MD5: 0c1ec278d961995979782803e0e5b2ee) NHabitatsTMPL.csv (MD5: 5e889ebb8c87d8507c2c7d7a322e40fb) Description Julia language (v0.3.2) was used to run model simulations and optimise marine reserves. Working directories will need to be updated for your computer. R was used for plotting results. <i>Instructions for running the model</i> Fishmod_Functions.jl specifies functions for running the model Opt_Functions.jl specifies functions for optimisations FishMod_types.jl type declarations for the model FishParams_TMP.jl parameters file Generate_initial_conditions.jl Generates initial conditions. Must be run and results saved before optimisations can be conducted. Dynamic_optimisation_multiple_runs.jl Runs static and dynamic optimisations for multiple scenarios and saves results. <i> </i> <i>R code for plotting results</i> stitchresults.R Stitches together results from multiple runs of different habitat protection targets into one file. MR_plots.R Make a map of the marine reserves Tradeoffs_plot_static_naive_informed_TMP_SCB.R Plot static naïve vs. informed tradeoffs. Tradeoffs_plot_Static_Dynamic_TMP.R Plot static informed vs. dynamic tradeoffs. <i>Data files</i> AllGridRefsTMPL.csv Grid cell definitions bath100.asc Depths for the TMP region HabitatGridRefsTMPL.csv Habitat types in each grid cell HabitatNamesL.csv Habitat names HabitatQualityL.csv Maximum coral trout recruitment rate in each habitat type NHabitatsTMPL.csv Number of habitat types <i>Instructions for sensitivity analyses</i> To run our sensitivity analyses with different dispersal distances. Update the disperal distance parameter 'mlarv' in the parameters file and re-run 'Generate_initial_conditions.jl' to get initial conditions and dispersal distance. Then run the optimisations.