cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1128671.v1
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) INTERVIEW QUESTIONNAIRE - HSC# 2013.11.347

description: The DAF Interview, FSU IRB HSC#2013.11347, consisted of 45 questions and covered eleven categories focused on research data management in a domain. The categories included: (1) Area of Research, (2) Disciplinary Domain Research Data Management, (3) Exemplar Research Project – The Funding Application Stage, (4) Exemplar Research Project – Data Collection Stage, (5) Exemplar Research Project - Data Storage and Backup, (6) Exemplar Research Project - Sharing and Security Research, (7) Exemplar Research Project - Archiving Data, (8) Expected Support, (9) Effective use of infrastructure, (10) Data Management Confidence and Awareness, and (11) Concluding Questions and Comments. Each category contained interview questions. The interview was administered to scientists online via Qualtrics and remained active from November 1, 2013 to December 23, 2013. There were 7 participants and 6 completed the interview for an 86% completion rate. The (1) DCC Curation Lifecycle Model, (2) Level 3 Curation Model, and (3) An Adapted Conceptual Framework Model were introduced as referent models images. These referent modes images were enabled with the Qualtrics Heat Map feature that allowed the images to capture responses via clicking on the images. This feature allowed interview participants to provide data through clicking on the elements of the images that best represent their involvement in research and perspectives on elements necessary when conducting research within and across disciplines. The data revealed three types of levels of experience with respect to reserch data managment within the scope of this research study: expert/advanced, intermediate, and novice resulting in multiple approaches for RDM articulation, education, training, and collaboration.
DOI: 10.6084/m9.figshare.1128654.v2
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012)

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework. Select data results are included for reproducibility. 67% selected pragmatism as top theoretical perspective followed by ethnography with 64% 55% disagree that data curation is the same as digital curation 61% disagree digital curation is the same as digital preservation 80% agree data curation, digital curation, and digital preservation are independent yet interrelated concepts 77% agree data management and curation services include data curation, digital curation, and digital preservation 59% agree there is a need to develop data curation theory from similarities, differences, and interrelationships from multiple competing models or frameworks 70% agree there is a need to develop interdisciplinary undergraduate data management and curation services programs
DOI: 10.6084/m9.figshare.1128657.v1
title: Multiple nuclear genes stabilize the phylogenetic backbone of the genus <i>Quercus</i>

description: Phylogenetic relationships among 108 oak species (genus <i>Quercus</i> L.) were inferred using DNA sequences of six nuclear genes selected from the existing genomic resources of the genus. Previous phylogenetic reconstructions based on traditional molecular markers are inconclusive at the deeper nodes. Overall, weak phylogenetic signals were obtained for each individual gene analysis, but stronger signals were obtained when gene sequences were concatenated. Our data support the recognition of six major intrageneric groups Cyclobalanopsis, Cerris, Ilex, Quercus, Lobatae and Protobalanus. Our analyses provide resolution at deeper nodes but with moderate support and a more robust infrageneric classification within the two major clades, the ‘Old World Oaks’ (Cyclobalanopsis, Cerris, Ilex) and ‘New World Oaks’ (Quercus, Lobatae, Protobalanus). However, depending on outgroup choice, our analysis yielded two alternative placements of the Cyclobalanopsis clade within the genus <i>Quercus</i>. When <i>Castanea</i> Mill. was chosen as outgroup, our data suggested that the genus <i>Quercus</i> comprised two clades corresponding to two subgenera as traditionally recognized by Camus: subgenus <i>Euquercus</i> Hickel and Camus and subgenus <i>Cyclobalanopsis</i> Øersted (Schneider). However, when <i>Notholithocarpus</i> Manos, Cannon and S. Oh was chosen as an outgroup subgenus <i>Cyclobalanopsis</i> clustered with Cerris and Ilex groups to form the Old World clade. To assess the placement of the root, we complemented our dataset with published data of ITS and CRC sequences. Based on the concatenated eight gene sequences, the most likely root position is at the split between the ‘Old World Oaks’ and the ‘New World Oaks’, which is one of the alternative positions suggested by our six gene analysis. Using a dating approach, we inferred an Eocene age for the primary divergences in <i>Quercus</i> and a root age of about 50–55 Ma, which agrees with palaeobotanical evidence. Finally, irrespective of the outgroup choice, our data boost the topology within the New World clade, where (Protobalanus + Quercus) is a sister clade of Lobatae. Inferred divergence ages within this clade and the Cerris–Ilex clade are generally younger than could be expected from the fossil record, indicating that morphological differentiation pre-dates genetic isolation in this clade.
DOI: 10.6084/m9.figshare.1128655.v1
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012)

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework. The preliminary study included questions on the four key concepts of data management, elements of a data management plan, theoretical frameworks/perspectives, and data seal of approval assessment guidelines. The survey participants included stakeholders representing funding agencies, institutions, users, publisher, and non-profit organizations within and outside of the USA. The findings served as a preliminary study for dissertation research on exploring the data management and curation (DMC) practices of scientists in research labs within a research university due to be published in 2014.
DOI: 10.6084/m9.figshare.1128671.v2
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) INTERVIEW QUESTIONNAIRE (Fall 2013) - HSC# 2013.11.347

description: The DAF Interview, FSU IRB HSC#2013.11347, consisted of 45 questions and covered eleven categories focused on research data management in a domain. The categories included: (1) Area of Research, (2) Disciplinary Domain Research Data Management, (3) Exemplar Research Project – The Funding Application Stage, (4) Exemplar Research Project – Data Collection Stage, (5) Exemplar Research Project - Data Storage and Backup, (6) Exemplar Research Project - Sharing and Security Research, (7) Exemplar Research Project - Archiving Data, (8) Expected Support, (9) Effective use of infrastructure, (10) Data Management Confidence and Awareness, and (11) Concluding Questions and Comments. Each category contained interview questions. The interview was administered to scientists online via Qualtrics and remained active from November 1, 2013 to December 23, 2013. There were 7 participants and 6 completed the interview for an 86% completion rate. The (1) DCC Curation Lifecycle Model, (2) Level 3 Curation Model, and (3) An Adapted Conceptual Framework Model were introduced as referent models images. These referent modes images were enabled with the Qualtrics Heat Map feature that allowed the images to capture responses via clicking on the images. This feature allowed interview participants to provide data through clicking on the elements of the images that best represent their involvement in research and perspectives on elements necessary when conducting research within and across disciplines. The data revealed three types of levels of experience with respect to reserch data managment within the scope of this research study: expert/advanced, intermediate, and novice resulting in multiple approaches for RDM articulation, education, training, and collaboration.
DOI: 10.6084/m9.figshare.1128669.v2
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) SURVEY QUESTIONNAIRE (Fall 2013) - HSC# 2013-3073

description: A survey of the data management and curation practices of scientists at six research labs and scientists affiliated with the NSF EarthCube Project was administered from October 1, 2013 - October 31, 2013. 129 scientists started and 107 scientists completed the survey for a 83% completion rate. The survey was an adapted Data Asset Framework survey. The DAF explored the topics such as data types, formats, barriers to data management, backups, and infrastructure to name a few. The DAF has been used by several higeher education institutions (HEIs) in the UK and the USA. The purpose of this survey was to build a better understanding of research data held in select research labs, to inform strategic planning for data management at Florida State University and to inform the wider FSU data management community. Within the scope of this study 'research data' was data that scientists currently held that has been collected and/or used in the course of their research at the Florida State University and/or respective institutions. Research data can be primary data collected by researchers or their research group or secondary data provided by a third party (i.e. existing data). Data may be quantitative or qualitative (e.g. survey results, interview transcripts, databases compiled from documentary sources, images or audiovisual files). Data that scientists 'currently hold' is all research data that they currently store anywhere (i.e., in your 'My Documents' folder, on shared drive, a PC or laptop, cloud storage, on portable media such as CDs/DVDs, external hard drives, paper, or USB.
DOI: 10.6084/m9.figshare.1128654.v3
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012) - HSC No. 2012.9198

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework.
DOI: 10.6084/m9.figshare.1128657.v2
title: Multiple nuclear genes stabilize the phylogenetic backbone of the genus <i>Quercus</i>

description: Phylogenetic relationships among 108 oak species (genus <i>Quercus</i> L.) were inferred using DNA sequences of six nuclear genes selected from the existing genomic resources of the genus. Previous phylogenetic reconstructions based on traditional molecular markers are inconclusive at the deeper nodes. Overall, weak phylogenetic signals were obtained for each individual gene analysis, but stronger signals were obtained when gene sequences were concatenated. Our data support the recognition of six major intrageneric groups Cyclobalanopsis, Cerris, Ilex, Quercus, Lobatae and Protobalanus. Our analyses provide resolution at deeper nodes but with moderate support and a more robust infrageneric classification within the two major clades, the ‘Old World Oaks’ (Cyclobalanopsis, Cerris, Ilex) and ‘New World Oaks’ (Quercus, Lobatae, Protobalanus). However, depending on outgroup choice, our analysis yielded two alternative placements of the Cyclobalanopsis clade within the genus <i>Quercus</i>. When <i>Castanea</i> Mill. was chosen as outgroup, our data suggested that the genus <i>Quercus</i> comprised two clades corresponding to two subgenera as traditionally recognized by Camus: subgenus <i>Euquercus</i> Hickel and Camus and subgenus <i>Cyclobalanopsis</i> Øersted (Schneider). However, when <i>Notholithocarpus</i> Manos, Cannon and S. Oh was chosen as an outgroup subgenus <i>Cyclobalanopsis</i> clustered with Cerris and Ilex groups to form the Old World clade. To assess the placement of the root, we complemented our dataset with published data of ITS and CRC sequences. Based on the concatenated eight gene sequences, the most likely root position is at the split between the ‘Old World Oaks’ and the ‘New World Oaks’, which is one of the alternative positions suggested by our six gene analysis. Using a dating approach, we inferred an Eocene age for the primary divergences in <i>Quercus</i> and a root age of about 50–55 Ma, which agrees with palaeobotanical evidence. Finally, irrespective of the outgroup choice, our data boost the topology within the New World clade, where (Protobalanus + Quercus) is a sister clade of Lobatae. Inferred divergence ages within this clade and the Cerris–Ilex clade are generally younger than could be expected from the fossil record, indicating that morphological differentiation pre-dates genetic isolation in this clade.
DOI: 10.6084/m9.figshare.1128655.v2
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012) - HSC No. 2012.9198

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework. The preliminary study included questions on the four key concepts of data management, elements of a data management plan, theoretical frameworks/perspectives, and data seal of approval assessment guidelines. The survey participants included stakeholders representing funding agencies, institutions, users, publisher, and non-profit organizations within and outside of the USA. The findings served as a preliminary study for dissertation research on exploring the data management and curation (DMC) practices of scientists in research labs within a research university due to be published in 2014.
DOI: 10.6084/m9.figshare.1128669.v3
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) SURVEY QUESTIONNAIRE (Fall 2013) - HSC# 2013.3073

description: A survey of the data management and curation practices of scientists at six research labs and scientists affiliated with the NSF EarthCube Project was administered from October 1, 2013 - October 31, 2013. 129 scientists started and 107 scientists completed the survey for a 83% completion rate. The survey was an adapted Data Asset Framework survey. The DAF explored the topics such as data types, formats, barriers to data management, backups, and infrastructure to name a few. The DAF has been used by several higeher education institutions (HEIs) in the UK and the USA. The purpose of this survey was to build a better understanding of research data held in select research labs, to inform strategic planning for data management at Florida State University and to inform the wider FSU data management community. Within the scope of this study 'research data' was data that scientists currently held that has been collected and/or used in the course of their research at the Florida State University and/or respective institutions. Research data can be primary data collected by researchers or their research group or secondary data provided by a third party (i.e. existing data). Data may be quantitative or qualitative (e.g. survey results, interview transcripts, databases compiled from documentary sources, images or audiovisual files). Data that scientists 'currently hold' is all research data that they currently store anywhere (i.e., in your 'My Documents' folder, on shared drive, a PC or laptop, cloud storage, on portable media such as CDs/DVDs, external hard drives, paper, or USB.
DOI: 10.6084/m9.figshare.1128671.v4
title: FLORIDA STATE UNIVERSITY DATA ASSET FRAMEWORK (DAF) INTERVIEW QUESTIONNAIRE (Fall 2013) - HSC# 2013.11347 (.pdf)

description: The DAF Interview, FSU IRB HSC#2013.11347, consisted of 45 questions and covered eleven categories focused on research data management in a domain. The categories included: (1) Area of Research, (2) Disciplinary Domain Research Data Management, (3) Exemplar Research Project – The Funding Application Stage, (4) Exemplar Research Project – Data Collection Stage, (5) Exemplar Research Project - Data Storage and Backup, (6) Exemplar Research Project - Sharing and Security Research, (7) Exemplar Research Project - Archiving Data, (8) Expected Support, (9) Effective use of infrastructure, (10) Data Management Confidence and Awareness, and (11) Concluding Questions and Comments. Each category contained interview questions. The interview was administered to scientists online via Qualtrics and remained active from November 1, 2013 to December 23, 2013. There were 7 participants and 6 completed the interview for an 86% completion rate. The (1) DCC Curation Lifecycle Model, (2) Level 3 Curation Model, and (3) An Adapted Conceptual Framework Model were introduced as referent models images. These referent modes images were enabled with the Qualtrics Heat Map feature that allowed the images to capture responses via clicking on the images. This feature allowed interview participants to provide data through clicking on the elements of the images that best represent their involvement in research and perspectives on necessary processes when conducting research within and across disciplines. The data revealed three types of levels of experience with respect to reserch data managment within the scope of this research study: expert/advanced, intermediate, and novice resulting in multiple approaches for RDM articulation, education, training, and collaboration.
DOI: 10.6084/m9.figshare.1128655.v4
title: Data Management & Curation Services: Exploring Stakeholders Opinions (Fall 2012) - HSC# 2012.9198 (.pdf)

description: The purpose of the research study was to explore stakeholders’ opinions on select data management and curation services issues that currently affect all disciplines. A data management and curation services 10-questions survey questionnaire was developed and administered to select data management and curation promoters (funders), stakeholders (institutions), and users (evaluators) from November 5, 2012 to December 5, 2012. The survey was approved by the Florida State University Institutional Review Board (IRB) and assigned the HSC No. 2012.9198 on November 2, 2012. The survey was started by 64 participants, completed by 53, and garnered an 83% completion rate. The survey’s findings from the data management and curation key concepts category lead to the development of the data management and curation (DMC) framework. The preliminary study included questions on the four key concepts of data management, elements of a data management plan, theoretical frameworks/perspectives, and data seal of approval assessment guidelines. The survey participants included stakeholders representing funding agencies, institutions, users, publisher, and non-profit organizations within and outside of the USA. The findings served as a preliminary study for dissertation research on exploring the data management and curation (DMC) practices of scientists in research labs within a research university due to be published in 2014.
DOI: 10.6084/m9.figshare.1128657.v3
title: Multiple nuclear genes stabilize the phylogenetic backbone of the genus <i>Quercus</i>

description: Phylogenetic relationships among 108 oak species (genus <i>Quercus</i> L.) were inferred using DNA sequences of six nuclear genes selected from the existing genomic resources of the genus. Previous phylogenetic reconstructions based on traditional molecular markers are inconclusive at the deeper nodes. Overall, weak phylogenetic signals were obtained for each individual gene analysis, but stronger signals were obtained when gene sequences were concatenated. Our data support the recognition of six major intrageneric groups Cyclobalanopsis, Cerris, Ilex, Quercus, Lobatae and Protobalanus. Our analyses provide resolution at deeper nodes but with moderate support and a more robust infrageneric classification within the two major clades, the ‘Old World Oaks’ (Cyclobalanopsis, Cerris, Ilex) and ‘New World Oaks’ (Quercus, Lobatae, Protobalanus). However, depending on outgroup choice, our analysis yielded two alternative placements of the Cyclobalanopsis clade within the genus <i>Quercus</i>. When <i>Castanea</i> Mill. was chosen as outgroup, our data suggested that the genus <i>Quercus</i> comprised two clades corresponding to two subgenera as traditionally recognized by Camus: subgenus <i>Euquercus</i> Hickel and Camus and subgenus <i>Cyclobalanopsis</i> Øersted (Schneider). However, when <i>Notholithocarpus</i> Manos, Cannon and S. Oh was chosen as an outgroup subgenus <i>Cyclobalanopsis</i> clustered with Cerris and Ilex groups to form the Old World clade. To assess the placement of the root, we complemented our dataset with published data of ITS and CRC sequences. Based on the concatenated eight gene sequences, the most likely root position is at the split between the ‘Old World Oaks’ and the ‘New World Oaks’, which is one of the alternative positions suggested by our six gene analysis. Using a dating approach, we inferred an Eocene age for the primary divergences in <i>Quercus</i> and a root age of about 50–55 Ma, which agrees with palaeobotanical evidence. Finally, irrespective of the outgroup choice, our data boost the topology within the New World clade, where (Protobalanus + Quercus) is a sister clade of Lobatae. Inferred divergence ages within this clade and the Cerris–Ilex clade are generally younger than could be expected from the fossil record, indicating that morphological differentiation pre-dates genetic isolation in this clade.