cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6048722
title: Dataset (I) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist

description: MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. https://doi.org/10.1016/j.csbj.2022.06.020 Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files) dataset I: systems SRL+Co, C-100 and BAY-1797 dataset I: each file contains all branched replicas and the main replica. dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b). dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches. dataset I: system SRL+Co ;each file contains one main replica dataset I: system BAY-1797; each file contains one main replica dataset II:system SRL ; each file contains one main replica.
DOI: 10.5281/zenodo.6355467
title: Dataset (II) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist

description: MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. https://doi.org/10.1016/j.csbj.2022.06.020 Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files) dataset I: systems SRL+Co, C-100 and BAY-1797 dataset I: each file contains all branched replicas and the main replica. dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b). dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches. dataset I: system SRL+Co ;each file contains one main replica dataset I: system BAY-1797; each file contains one main replica dataset II:system SRL ; each file contains one main replica.
DOI: 10.5281/zenodo.6355466
title: Dataset (II) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist

description: MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. https://doi.org/10.1016/j.csbj.2022.06.020 Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files) dataset I: systems SRL+Co, C-100 and BAY-1797 dataset I: each file contains all branched replicas and the main replica. dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b). dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches. dataset I: system SRL+Co ;each file contains one main replica dataset I: system BAY-1797; each file contains one main replica dataset II:system SRL ; each file contains one main replica.
DOI: 10.5281/zenodo.6641930
title: Erythroxylum kunthianum SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6641929
title: Erythroxylum kunthianum SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6615454
title: Dataset (III) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist

description: MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. https://doi.org/10.1016/j.csbj.2022.06.020 Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files) dataset I: systems SRL+Co, C-100 and BAY-1797 dataset I: each file contains all branched replicas and the main replica. dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b). dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches. dataset I: system SRL+Co ;each file contains one main replica dataset I: system BAY-1797; each file contains one main replica dataset II:system SRL ; each file contains one main replica. dataset III:system C-100+Co (compound 100 in presence of SRC-1 coactivator) ; each file contains one main replica.
DOI: 10.5281/zenodo.6615453
title: Dataset (III) related to publication: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist

description: MD simulation data related to the publication Rashidian et al.: Discrepancy in interactions and conformational dynamics of pregnane X receptor (PXR) bound to an agonist and a novel competitive antagonist. https://doi.org/10.1016/j.csbj.2022.06.020 Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files) dataset I: systems SRL+Co, C-100 and BAY-1797 dataset I: each file contains all branched replicas and the main replica. dataset1: C_100_Replica1 contains four branched replicas and the main replica. The two of four branched replicas which stem from the middle of the main replica named: b_c_D1_r1_2285 (corresponding name in the SI data is R1_a) and b_c_D1_2285_r1_2 (corresponding name in the SI data is R1_b). dataset1: C_100_Replica2–5 , each file contains one main replica and the two branches. dataset I: system SRL+Co ;each file contains one main replica dataset I: system BAY-1797; each file contains one main replica dataset II:system SRL ; each file contains one main replica. dataset III:system C-100+Co (compound 100 in presence of SRC-1 coactivator) ; each file contains one main replica.
DOI: 10.5281/zenodo.6641966
title: Terahertz optoacoustic detection of aqueous salt solutions

description: We calculate time-domain THz-OA signal intensities of NaCl solutions with different concentration (0.5, 0.75, 1, 1.5, 2, 3 mol/L).
DOI: 10.5281/zenodo.6641965
title: Terahertz optoacoustic detection of aqueous salt solutions

description: We calculate time-domain THz-OA signal intensities of NaCl solutions with different concentration (0.5, 0.75, 1, 1.5, 2, 3 mol/L).
DOI: 10.5281/zenodo.6641875
title: Dependency Networks of Open Source Libraries Available Through CocoaPods, Carthage and Swift PM

description: Third party libraries are used to integrate existing solutions for common problems and help speed up development. The use of third party libraries, however, can carry risks, for example through vulnerabilities in these libraries. Studying the dependency networks of package managers lets us better understand and mitigate these risks. So far, the dependency networks of the three most important package managers of the Apple ecosystem, CocoaPods, Carthage and Swift PM, have not been studied. We analysed the dependencies for all publicly available open source libraries up to December 2021 and compiled a dataset containing the dependency networks of all three package managers. The dependency networks can be used to analyse how vulnerabilities are propagated through transitive dependencies. In order to ease the tracing of vulnerable libraries we also queried the NVD database and included publicly reported vulnerabilities for these libraries in the dataset.
description: Funding of this research came from the Estonian Center of Excellence in ICT research (EXCITE), the European Social Fund via IT Academy program, the Estonia Research Council grant (PRG 1226), the Austrian ministries BMVIT and BMDW, and the Province of Upper Austria under the COMET (Competence Centers for Excellent Technologies) Programme managed by FFG.
DOI: 10.5281/zenodo.6376008
title: Dependency Networks of Open Source Libraries Available Through CocoaPods, Carthage and Swift PM

description: Third party libraries are used to integrate existing solutions for common problems and help speed up development. The use of third party libraries, however, can carry risks, for example through vulnerabilities in these libraries. Studying the dependency networks of package managers lets us better understand and mitigate these risks. So far, the dependency networks of the three most important package managers of the Apple ecosystem, CocoaPods, Carthage and Swift PM, have not been studied. We analysed the dependencies for all publicly available open source libraries up to December 2021 and compiled a dataset containing the dependency networks of all three package managers. The dependency networks can be used to analyse how vulnerabilities are propagated through transitive dependencies. In order to ease the tracing of vulnerable libraries we also queried the NVD database and included publicly reported vulnerabilities for these libraries in the dataset.
description: Funding of this research came from the Estonian Center of Excellence in ICT research (EXCITE), the European Social Fund via IT Academy program, the Estonia Research Council grant (PRG 1226), the Austrian ministries BMVIT and BMDW, and the Province of Upper Austria under the COMET (Competence Centers for Excellent Technologies) Programme managed by FFG.
DOI: 10.5281/zenodo.6641962
title: Amphioctopus burryi SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6641961
title: Amphioctopus burryi SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6606501
title: Data set of manuscript entiteld Sigma Oscillations Protect or Reinstate Motor Memory Depending on their Temporal Coordination with Slow Waves

description: Data set of manuscript entiteld Sigma Oscillations Protect or Reinstate Motor Memory Depending on their Temporal Coordination with Slow Waves EEG files : Brainvision *.dat; *.edf : eeg files of the experimental nap *.vhdr: corresponding header files *.vmrk: corresponding marker files time starting from recording sample *._Pauselog.txt: markers with condition in the stimulation computer time Sleep Scores: Scores by the sleep technician (one file per participants). Surveys: General survey (first screening) and complete survey (for inclusion). Code correspondance is provided in ID_correspondance.txt BehavData: For each participant, a text file with all the cues and responses logged for each tasks. *_raw.txt are present when an issue arised during experiment and a task needed to be re-started.
DOI: 10.5281/zenodo.6528915
title: CarpeDiem datasets

description: <em>CarpeDiem</em> draws from patients in the Successful Clinical Response in Pneumonia Therapy (SCRIPT) systems biology center, a multi-investigator collaborative group led by Dr. Richard Wunderink and supported by a collaborative U19 award from the NIAID. SCRIPT is a multidisciplinary effort that involves investigators across disciplines at Northwestern.
description: Supported by NIH NIAID U19AI135964
DOI: 10.5281/zenodo.6528914
title: CarpeDiem datasets

description: <em>CarpeDiem</em> draws from patients in the Successful Clinical Response in Pneumonia Therapy (SCRIPT) systems biology center, a multi-investigator collaborative group led by Dr. Richard Wunderink and supported by a collaborative U19 award from the NIAID. SCRIPT is a multidisciplinary effort that involves investigators across disciplines at Northwestern.
description: Supported by NIH NIAID U19AI135964
DOI: 10.6084/m9.figshare.20059043
title: In situ determination of the penetration depth of mirrors in PF cavities - Data in figures

description: Metadata to the data presented in "<em>In situ determination of the penetration depth of mirrors in Fabry-Perot refractometers and its influence on assessment of refractivity and pressure</em>" by Isak Silander, Johan Zakrisson, Vinicius Silva de Oliveira, Clayton Forssén, Aleksandra Foltynowicz, Tom Rubin, Martin Zelan, and Ove Axner, published in Optics Express (manuscript # 463285)
DOI: 10.6084/m9.figshare.20059043.v1
title: In situ determination of the penetration depth of.docx

description: Metadata to the data presented in "<em>In situ determination of the penetration depth of mirrors in Fabry-Perot refractometers and its influence on assessment of refractivity and pressure</em>" by Isak Silander, Johan Zakrisson, Vinicius Silva de Oliveira, Clayton Forssén, Aleksandra Foltynowicz, Tom Rubin, Martin Zelan, and Ove Axner, published in Optics Express (manuscript # 463285)
DOI: 10.17028/rd.lboro.20066618
title: Supplemental information files for News consumption and immigration attitudes: a mixed methods approach

description: <strong>Supplemental information files for article News consumption and immigration attitudes: a mixed methods approach</strong> <br> Existing research has shown that the media can influence public attitudes to immigration. While existing research provides insight into both quantitative and qualitative patterns of media coverage of immigration, research that links such coverage with audience attitudes is almost exclusively quantitative, often focused on the west, and are often single-country studies. We argue that the adoption of a mixed-methods approach to audiences of immigration news, combined with a comparative design and a focus on Eastern Europe – a region scoring lowest in the world in terms of migrant acceptance – can bring significant advances to knowledge in this area, leading to a more rounded understanding of how media come to shape immigration attitudes. To demonstrate this, we draw on a comparative, mixed-methods data set comprising representative population surveys (N=4,092), an expert survey (N=60), and qualitative interviews (N=120) conducted in four Eastern European countries. In contrast to existing research on Western Europe, we found significant variation in the links between attitudes to immigration and use of Public Service Media (PSM), with PSM consumption linked with more negative attitudes to immigration in some countries, and with more positive attitudes in others. Second, our results confirm that different attitudes to immigration are embedded in different qualitative understandings of immigration: while participants with more positive attitudes often adopted a more inclusive understanding of immigration, those with more negative attitudes adopted a narrower understanding. Third, we demonstrated the importance of family and acquaintances as trusted sources of information.
DOI: 10.17028/rd.lboro.20066618.v1
title: Supplemental information files for News consumption and immigration attitudes: a mixed methods approach

description: <strong>Supplemental information files for article News consumption and immigration attitudes: a mixed methods approach</strong> <br> Existing research has shown that the media can influence public attitudes to immigration. While existing research provides insight into both quantitative and qualitative patterns of media coverage of immigration, research that links such coverage with audience attitudes is almost exclusively quantitative, often focused on the west, and are often single-country studies. We argue that the adoption of a mixed-methods approach to audiences of immigration news, combined with a comparative design and a focus on Eastern Europe – a region scoring lowest in the world in terms of migrant acceptance – can bring significant advances to knowledge in this area, leading to a more rounded understanding of how media come to shape immigration attitudes. To demonstrate this, we draw on a comparative, mixed-methods data set comprising representative population surveys (N=4,092), an expert survey (N=60), and qualitative interviews (N=120) conducted in four Eastern European countries. In contrast to existing research on Western Europe, we found significant variation in the links between attitudes to immigration and use of Public Service Media (PSM), with PSM consumption linked with more negative attitudes to immigration in some countries, and with more positive attitudes in others. Second, our results confirm that different attitudes to immigration are embedded in different qualitative understandings of immigration: while participants with more positive attitudes often adopted a more inclusive understanding of immigration, those with more negative attitudes adopted a narrower understanding. Third, we demonstrated the importance of family and acquaintances as trusted sources of information.
DOI: 10.34740/kaggle/dsv/3800770
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.2560484
title: A Survey of Online Help-Seeking in Young Adults in Ireland

description: This data is from an online survey that was aimed at young people living in Ireland aged 18-25.
DOI: 10.5281/zenodo.2560483
title: A Survey of Online Help-Seeking in Young Adults in Ireland

description: This data is from an online survey that was aimed at young people living in Ireland aged 18-25.
DOI: 10.21227/h7ye-x037
title: Real-time task latency in general-purpose hypervisors - testing the limits

description: Emulating a RT task and measuring the response latency of its thread by means of the high-resolution testing tool Cyclictest. The thread was clocked at 10ms, and a FIFO scheduling policy was used, with the thread being assigned the highest priority. Measurements were performed in distinct testing environments, some of which had best effort concurrent threads competing for the machine resources. For this purpose, the workload generator tool stress was used. A total of 20 simultaneous workers were instantiated (10 exercising the CPU by spinning on square root function, and 10 spinning on malloc/free operations with 64 MB blocks), which was enough to overload the available cores. Each test had a duration of 8 hours, which led to over 2.5 million samples per test.The underlying hardware consisted of an Asus PRIME H410M-A motherboard, with an Intel® Core™ i5-10400F 2.9GHz CPU with 6 cores, and 16GB DDR4 RAM running at 2666MHz.
DOI: 10.5281/zenodo.6641864
title: Research Data for "Molecular Dynamics Study of Structure and Reactions at the Hydroxylated Mg(0001)/Bulk Water Interface"

description: This folder contains data used in the paper "Molecular Dynamics Study of Structure and Reactions at the Hydroxylated Mg(0001)/Bulk Water Interface" (Title subject to change). Some details on the structure are as follows: The folder "figures" contains data to create various figures in the main paper. Each file contains a json object, where keys "0", "1", etc. refer to the 1st/2nd subplot for a figure. The values are then another json object with the data used to create the relevant plot; the most useful of which is the "data" key which contains the plot data. The folder "md_traj" contains the molecular dynamics trajectory. The file "traj.exyz" is a standard format which can be opened with various software. "traj.json" contains the same information in an in-house format used by the author. The "thermo_data.json" contains various thermodynamics properties over the simulation, such as temperatures and kinetic energies. Units are femtoseconds, Angstrom, electron-volts and Kelvin. The folder "react_traj" contains trajectories in the same formats as "md_traj", but each are limited to time-windows where reactions occurred (so each trajectory will only be hundreds of femtoseconds long at most). The subfolder "full_traj" contains the trajectories with all atoms present, whilst "trimmed_traj" contains trajectories with most atoms removed (the atoms included are those nearest the reaction).We include these "trimmed_traj" files as it is difficult to find the reacting molecules when visualising all atoms in the simulation. The folder "opt_geoms" contains geometries for various structures used in the paper (in *.exyz format). These also contain *.json files; these contain information on how the calculations were carried out in a format used by the author (they are small files primarily included for the benefit of the author).
DOI: 10.5281/zenodo.6641863
title: Research Data for "Molecular Dynamics Study of Structure and Reactions at the Hydroxylated Mg(0001)/Bulk Water Interface"

description: This folder contains data used in the paper "Molecular Dynamics Study of Structure and Reactions at the Hydroxylated Mg(0001)/Bulk Water Interface" (Title subject to change). Some details on the structure are as follows: The folder "figures" contains data to create various figures in the main paper. Each file contains a json object, where keys "0", "1", etc. refer to the 1st/2nd subplot for a figure. The values are then another json object with the data used to create the relevant plot; the most useful of which is the "data" key which contains the plot data. The folder "md_traj" contains the molecular dynamics trajectory. The file "traj.exyz" is a standard format which can be opened with various software. "traj.json" contains the same information in an in-house format used by the author. The "thermo_data.json" contains various thermodynamics properties over the simulation, such as temperatures and kinetic energies. Units are femtoseconds, Angstrom, electron-volts and Kelvin. The folder "react_traj" contains trajectories in the same formats as "md_traj", but each are limited to time-windows where reactions occurred (so each trajectory will only be hundreds of femtoseconds long at most). The subfolder "full_traj" contains the trajectories with all atoms present, whilst "trimmed_traj" contains trajectories with most atoms removed (the atoms included are those nearest the reaction).We include these "trimmed_traj" files as it is difficult to find the reacting molecules when visualising all atoms in the simulation. The folder "opt_geoms" contains geometries for various structures used in the paper (in *.exyz format). These also contain *.json files; these contain information on how the calculations were carried out in a format used by the author (they are small files primarily included for the benefit of the author).
DOI: 10.5281/zenodo.6642033
title: Observations on the interaction between plant growth-promoting bacteria and the root knot nematode Meloidogyne javanica

description: This is the data set associated with the paper currently under peer review, on the biocontrol potential of plant growth promoting rhizobacteria against root knot nematodes.
DOI: 10.5281/zenodo.6641830
title: Observations on the interaction between plant growth-promoting bacteria and the root knot nematode Meloidogyne javanica

description: This is the data set associated with the paper currently under peer review, on the biocontrol potential of plant growth promoting rhizobacteria against root knot nematodes.
DOI: 10.34740/kaggle/dsv/3800823
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.6641995
title: Pernis celebensis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6641994
title: Pernis celebensis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6642028
title: Research on Universities Profile upon Entrepreneurship and Innovation Orientation: Case of Developing Countries

description: This Data set is a part of a research project of "Research on Universities Profile upon Entrepreneurship and Innovation Orientation: Case of Developing Countries"
DOI: 10.5281/zenodo.6642027
title: Research on Universities Profile upon Entrepreneurship and Innovation Orientation: Case of Developing Countries

description: This Data set is a part of a research project of "Research on Universities Profile upon Entrepreneurship and Innovation Orientation: Case of Developing Countries"