cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p94d8/2
title: landmark morphometrics
DOI: 10.5061/dryad.p94d8/3
title: Appendix 1 20180122

description: These data are also provided in Excel format.
DOI: 10.5061/dryad.p94d8/4
title: Appendix 1 20180122

description: These data are also provided in CSV format.
DOI: 10.5061/dryad.qf5m8/1
title: NaturalPopulations_Survival

description: Daily survival natural populations of D. melanogaster collected across seasonal time (spring and fall) and three geographic locations (Massachusetts, Pennsylvania and Virginia) for 5 days post infection by either Providencia rettgeri or Enterococcus faecalis
DOI: 10.5061/dryad.qf5m8/2
title: Natural Populations

description: Bacterial load of natural populations of D. melanogaster collected across seasonal time (spring and fall) and three geographic locations (Massachusetts, Pennsylvania and Virginia) 24h post infection by either Providencia rettgeri or Enterococcus faecalis
DOI: 10.5061/dryad.qf5m8/3
title: RecombPopulations_Survival

description: Daily survival for recombinant populations fixed for sets of seasonally oscillated alleles in Tep3, Dro6 and Fadd for 5 days post infection by either Providencia rettgeri or Enterococcus faecalis
DOI: 10.5061/dryad.qf5m8/4
title: RecombPopulations_BacterialLoad

description: Bacterial load of recombinant populations fixed for sets of seasonally oscillated alleles in Tep3, Dro6 and Fadd 24h post infection by either Providencia rettgeri or Enterococcus faecalis
DOI: 10.5061/dryad.qf5m8/5
title: Tep3_region.header.inbred.ug.filter.vsqr.recode.noREP.noINDEL

description: Tep3 sequence data for inbred lines collected in Linvilla Orchards, Media, PA from the spring (LN6 and LNPA) and fall (LN10) in 2012.
DOI: 10.5061/dryad.qf5m8/6
title: Metadata

description: Description of the coding for the phenotype files
DOI: 10.5061/dryad.qf5m8/7
title: MOTHURanalysisscript
DOI: 10.5061/dryad.qs4nh/1
title: Observations on individual styles (n=1153 records)

description: Each record in this spreadsheet includes the observations recorded for an individual style, including whether it was self- vs. cross-pollinated, the number of pollen grains adhering to the stigma, and the number of pollen tubes visible in each 1-mm interval of the style four hours following pollination.  The temperature recorded at the time of pollination and the mean temperature recorded for the four hours following pollination are also included. The stigma penetrance rate and the mean pollen tube growth rate among all pollen tubes visible in the style are also estimated based on Equation 1 in the published manuscript.
DOI: 10.5061/dryad.qs4nh/2
title: Pollen Donor Means by Pollination Type (Selfed vs Outcrossed Pollinations) (N=254)

description: Each of the 254 records in this spreadsheet includes the mean values for the observations recorded for the selfed or the outcrossed flowers of a given pollen donor.  In a very few cases, a pollen donor is represented by only one type of pollination.  This data set was used in all of the analyses reported in the published article and in the Supplemental Materials for which the sample size was ~254 (in some analyses, the sample size was reduced due to missing values).
DOI: 10.5061/dryad.s34cm/1
title: dataset_crp_conversion

description: Contains data on greenhouse gas (nitrous oxide, carbon dioxide, and methane) fluxes from and soil water and nitrogen availability in Conservation Reserve Program (CRP) grasslands before and after conversion on June 8, 2009 to row crops under no-till and conventional tillage, plus the global warming impact of individual greenhouse gases under no-till and conventional tillage soybeans and under an unconverted reference field for the period May 7 to November 24, 2009.
DOI: 10.5061/dryad.t00nn/1
title: Capture Data

description: A comma-delimited file with the capture data for 5 species of songbirds at the Coyote Creek banding station, San Jose, Santa Clara Co., California, 1987 to 2008.
DOI: 10.5061/dryad.t00nn/2
title: Weather Data

description: A comma-delimited file with monthly or bimonthly averages for three climatic indexes, 1980 to 2009.  The three indices include: MEI = Multivariate El Nino/Southern Oscillation Index, NAO = North Atlantic Oscillation index, PNA = Pacific/North American index
DOI: 10.5061/dryad.t00nn/3
title: Spring Migration

description: An R script for spring migration, quantile regression and modeling median arrival vs. climatic indices
DOI: 10.5061/dryad.t00nn/4
title: Autumn Migration

description: An R script for autumn migration, quantile regression and modeling median arrival vs. climatic indices
DOI: 10.5061/dryad.t00nn/5
title: Weather Analysis

description: An R script for analysis of climate variables
DOI: 10.5061/dryad.t00nn/6
title: READ ME

description: Metadata for data files and R scripts
DOI: 10.5061/dryad.v652r/1
title: polarbearpaper_data

description: Data on notebook
DOI: 10.5061/dryad.0r4d0/1
title: Lifespan Data

description: Lifespan data for the manuscript accepted in Evolution titled as: "The “unguarded-X” and the genetic architecture of lifespan: Inbreeding results in a potentially maladaptive sex-specific reduction of female lifespan in Drosophila melanogaster". It also contains data from a previous experiment with the same design (Carazo P, Green J, Sepil I, Pizzari T, Wigby S (2016) Inbreeding removes sex differences in lifespan in a population of Drosophila melanogaster. Biology Letters 12(6): 20160337.). In the csv file the variables are as follows: ID (identification name for each isoline), LS (lifespan in days), IBR (inbreeding treatment), SE (social environment), SEX and finally EXP (name of the experiment, A is the one done by Carazo et al 2016 and B is the current experiment).
DOI: 10.5061/dryad.0r4d0/2
title: Fitness Data

description: Fitness data for the manuscript accepted in Evolution titled as: "The “unguarded-X” and the genetic architecture of lifespan: Inbreeding results in a potentially maladaptive sex-specific reduction of female lifespan in Drosophila melanogaster". In the csv file the variables are as follows: ID (identification name for each isoline), IBR (inbreeding treatment), SRS (standardized reproductive success) and Sex.
DOI: 10.5061/dryad.0r4d0/3
title: Lifespan Data (inbred and outbred)

description: Inbred/Outbred lifespan data for the manuscript accepted in Evolution titled as: "The “unguarded-X” and the genetic architecture of lifespan: Inbreeding results in a potentially maladaptive sex-specific reduction of female lifespan in Drosophila melanogaster". It also contains data from a previous experiment with the same design (Carazo P, Green J, Sepil I, Pizzari T, Wigby S (2016) Inbreeding removes sex differences in lifespan in a population of Drosophila melanogaster. Biology Letters 12(6): 20160337.). In the csv file the variables are as follows: Experiment (as the name of the experiment, A is the one done by Carazo et al 2016 and B is the current experiment), ID (identification name for each isoline), Sex, LSib (inbred lifespan in days), LSob (outbred lifespan in days), SE (Social Environment)
DOI: 10.5061/dryad.0r4d0/4
title: Lifespan Data (Male and Female)

description: Male/Female lifespan data for the manuscript accepted in Evolution titled as: "The “unguarded-X” and the genetic architecture of lifespan: Inbreeding results in a potentially maladaptive sex-specific reduction of female lifespan in Drosophila melanogaster". It also contains data from a previous experiment with the same design (Carazo P, Green J, Sepil I, Pizzari T, Wigby S (2016) Inbreeding removes sex differences in lifespan in a population of Drosophila melanogaster. Biology Letters 12(6): 20160337.). In the csv file the variables are as follows: Experiment (as the name of the experiment, A is the one done by Carazo et al 2016 and B is the current experiment), ID (identification name for each isoline), Inbreeding (the inbreeding treatment, LSm (male lifespan in days), LSf (female lifespan in days), SE (Social Environment).
DOI: 10.5061/dryad.0r4d0/5
title: ID in lifespan data

description: Inbreeding depression in lifespan data for the manuscript accepted in Evolution titled as: "The “unguarded-X” and the genetic architecture of lifespan: Inbreeding results in a potentially maladaptive sex-specific reduction of female lifespan in Drosophila melanogaster". It also contains data from a previous experiment with the same design (Carazo P, Green J, Sepil I, Pizzari T, Wigby S (2016) Inbreeding removes sex differences in lifespan in a population of Drosophila melanogaster. Biology Letters 12(6): 20160337.). In the csv file the variables are as follows: Experiment (as the name of the experiment, A is the one done by Carazo et al 2016 and B is the current experiment), ID (identification name for each isoline), SE (Social Environment), dLSf (decrease due to inbreeding for females), dLSm (decrease due to inbreeding for females).
DOI: 10.5061/dryad.1c990.1
title: Data from: Host-pathogen metapopulation dynamics suggest high elevation refugia for boreal toads
DOI: 10.5061/dryad.1c990.1/1.1
title: boreal_toad_bd_histories

description: Encounter histories for boreal toads and Bd at 83 sites in the southern Rocky Mountains. Data are for 10 visits for each species from 2001-2010. Encounters are coded as 1s when boreal toads or Bd were detected, 0s if these species were not detected, and "." if no survey was conducted.
DOI: 10.5061/dryad.1c990.1/2.1
title: boreal_toad_bd_covariates

description: Site and survey covariate information for 83 study sites in the southern Rocky Mountains and 100 survey dates. Site covariates include: elevation, habitat permanence, whether other amphibian species had been detected at the site in the past, and which region the site is located in. The only survey covariate used was day-of-year that the survey was conducted on.
DOI: 10.5061/dryad.1c990.2/1.2
title: boreal_toad_bd_histories

description: Encounter histories for boreal toads and Bd at 83 sites in the southern Rocky Mountains. Data are for 10 visits for each species from 2001-2010. Encounters are coded as 1s when boreal toads or Bd were detected, 0s if these species were not detected, and "." if no survey was conducted.
DOI: 10.5061/dryad.1c990.2/2.2
title: boreal_toad_bd_covariates

description: Site and survey covariate information for 83 study sites in the southern Rocky Mountains and 100 survey dates. Site covariates include: elevation, habitat permanence, whether other amphibian species had been detected at the site in the past, and which region the site is located in. The only survey covariate used was day-of-year that the survey was conducted on.
DOI: 10.5061/dryad.21jt3/1
title: Annualized Data for Kentucky Lake Parameters

description: The .csv file contains all the annualized data used in the analysis. See the URL link inside the document to request the original data used to construct the annualized data, the Euclidean distance matrix, the Group matrix, density distance matrices for each taxon, and the synchrony (i.e. correlation) matrices among locations for all variables.
DOI: 10.5061/dryad.271nf43/1
title: Erythranthe (Mimulus) cardinalis demography data

description: Range-wide demographic data for 32 populations of Erythranthe (Mimulus) cardinalis from 2010-2014. Please see README file for details.
DOI: 10.5061/dryad.271nf43/2
title: Annual climate data for each study population from 1951-2014

description: Annual climate data for each Erythranthe (Mimulus) cardinalis study population from 1951-2014. Data were obtained from ClimateWNA version 5.41 (Wang T, Hamann A, Spittlehouse DL, Murdock TQ; 2012; "ClimateWNA - High-resolution spatial climate data for western North America," J Appl Meteorol Climatol 51:16-29). ID1: Population, MAT: Mean annual temperature, MAP: Mean annual precipitation.
DOI: 10.5061/dryad.271nf43/3
title: R scripts for Sheth & Angert PNAS 2018

description: R scripts to reproduce all analyses in Sheth & Angert (2018). Run scripts in order from "01_" to "12_". Scripts in "temporal_demog_compensation_TableS7_FigS7" folder were used to run analyses of temporal demographic compensation for populations from the southern range edge (see SI Appendix for more details).
DOI: 10.5061/dryad.37838/1
title: Supporting Information

description: GC and GC/MS chromatograms of volatile compounds obtained from Echinops ilicifolius
DOI: 10.5061/dryad.4k40j/23
title: Lib8_Index2_S2_L001_R1_001.fastq

description: gzipped file containing Illumina sequencing data from: Library 8; Index 2; Read 1
DOI: 10.5061/dryad.4k40j/24
title: Lib7_Index12_S4_L001_R2_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 7; Index 12; Read 2
DOI: 10.5061/dryad.4k40j/25
title: Lib7_Index12_S4_L001_R1_001.fastq

description: gzipped tar file containing Illumina sequencing data from: Library 7; Index 12; Read 1
DOI: 10.5061/dryad.4k40j/26
title: Lib7_Index6_S3_L001_R2_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 7; Index 6; Read 2
DOI: 10.5061/dryad.4k40j/27
title: Lib7_Index6_S3_L001_R1_001.fastq

description: gzipped tar file containing  Illumina sequence data from: Library 7; Index 6; Read 1
DOI: 10.5061/dryad.4k40j/28
title: Lib7_Index2_S2_L001_R2_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 7; Index 2; Read 2
DOI: 10.5061/dryad.4k40j/29
title: Lib7_Index2_S2_L001_R1_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 7; Index 2; Read 1
DOI: 10.5061/dryad.4k40j/30
title: Lib7_Index1_S1_L001_R2_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 7; Index1; Read 2
DOI: 10.5061/dryad.7j83s.2
title: Data from: Primate diversification inferred from phylogenies and fossils
DOI: 10.5061/dryad.7j83s.2/1.2
title: Raw data on fossil taxonomy and ages

description: Raw data on fossil taxonomy, first and last appearance dates (FAD, LAD, respectively), and number of occurrences, with ages and references from PBDB and the literature search performed in this study.
DOI: 10.5061/dryad.7j83s.2/2.2
title: Table S4. PBDB raw data

description: Raw data and references downloaded from Paleobiology Database
DOI: 10.5061/dryad.7j83s.2/3.2
title: R code for Herrera Primate diversification

description: R code to run RPANDA phylogenetic diversification analysis, and fossil data preparation for PYRATE as well as analyses with PALEOTREE
DOI: 10.5061/dryad.8m0p1/1
title: Mills_data_final_2018

description: This is the data used to build models predicting the probability of winter white for each species across their range. It is needed to run the R script. See README file for column descriptions and more information.
DOI: 10.5061/dryad.9jj84/2
title: paramsQ0

description: Code for these data available at https://github.com/jogwalker/parasite_transmission_Q0
DOI: 10.5061/dryad.9jj84/3
title: paramsTreatfinalruns

description: Code for these data available at https://github.com/jogwalker/parasite_transmission_Q0
DOI: 10.5061/dryad.9jj84/4
title: Botsclimdat

description: Code for these data available at https://github.com/jogwalker/parasite_transmission_Q0
DOI: 10.5061/dryad.9jj84/5
title: paramsMovement

description: Code for these data available at https://github.com/jogwalker/parasite_transmission_Q0
DOI: 10.5061/dryad.9jj84/6
title: L3data

description: Code for these data available at https://github.com/jogwalker/parasite_transmission_Q0
DOI: 10.5061/dryad.9vt6v/1
title: jeb_dec17_cavotoetal

description: Zip file containing a ReadMe file and all input files needed for the simulations
DOI: 10.5061/dryad.d9727v4/1
title: Oñatibia et al 2018 - Oikos - Data

description: In the first sheet, this file contains data about grazing pressure, plant cover, average patch size, inter-patch distance and number of patches in three communities located along a regional productivity gradient (low-, intermediate- and high productivity community) (Data supporting Figure 2). In the second sheet, the file contains data about patch-size and inter-patch-size distributions in the three communities, under three grazing intensities (ungrazed, moderately grazed and intensively grazed) (Data supporting Figure 3). Finally, sheets 3, 4 and 5 contain data about individual species cover and grazing pressure in the low-productivity community (sheet 3), the intermediate-productivity community (sheet 4) and the high productivity community (sheet 5) (Data supporting Table 2).
DOI: 10.5061/dryad.k3rv4/3
title: Moatt et al Data_S3

description: Data file for activity measures
DOI: 10.5061/dryad.k3rv4/4
title: Moatt et al Data_S4

description: Data file for swimming endurance measures
DOI: 10.5061/dryad.k3rv4/5
title: Dialog S1

description: Word document explaining Data files S1-S4
DOI: 10.5061/dryad.k3rv4/6
title: Moatt et al Script

description: R script for full analysis
DOI: 10.5061/dryad.n24q8/20
title: ITS_EUDEMEAE

description: ITS alignment of tribe Eudemeae dataset including Stenodraba accessions.
DOI: 10.5061/dryad.n24q8/21
title: trnL-F_EUDEMEAE

description: trnL-F alignment of tribe Eudemeae dataset including Stenodraba accessions.
DOI: 10.5061/dryad.n24q8/22
title: trnH-psbA_EUDEMEAE

description: trnH-psbA alignment of tribe Eudemeae dataset including Stenodraba accessions.
DOI: 10.5061/dryad.n24q8/23
title: ITS_EUDEMEAE_Nexus

description: Nexus file with the ITS matrix of tribe Eudemeae including Stenodraba accessions.
DOI: 10.5061/dryad.n24q8/24
title: trnL-F_EUDEMEAE_Nexus

description: Nexus file with the trnL-F matrix of tribe Eudemeae including Stenodraba accessions.
DOI: 10.5061/dryad.n24q8/25
title: trnH-psbA_EUDEMEAE_Nexus

description: Nexus file with the trnH-psbA matrix of tribe Eudemeae including Stenodraba accessions.
DOI: 10.5061/dryad.n24q8/26
title: RAxML_bestTree.ITS

description: Maximum likelihood tree for analyses within tribe Eudemeae generated with RAxML and using the ITS dataset.
DOI: 10.5061/dryad.n24q8/27
title: RAxML_bestTree.trnL-F

description: Maximum likelihood tree for analyses within tribe Eudemeae generated with RAxML and using the trnL-F dataset.
DOI: 10.5061/dryad.nf966/1
title: Environment

description: Microclimatic variables recorded at each trap
DOI: 10.5061/dryad.nf966/2
title: Species

description: Number of captures of velvet-ant species per trap
DOI: 10.5061/dryad.nf966/3
title: Species (most abundant)

description: Number of captures of velvet-ant species (most abundant) per trap
DOI: 10.5061/dryad.nf966/4
title: Species (monthly captures)

description: Number of captures of velvet-ant species per trap per month
DOI: 10.5061/dryad.qf5m8/8
title: microbiota
DOI: 10.5061/dryad.qs4nh/3
title: Pollen Donor Means (Means of Selfed and Outcrossed Pollinations) (N=136)

description: Each of the 136 records in this spreadsheet includes the mean values for the observations recorded for the selfed AND the outcrossed flowers of a given pollen donor.  In other words, these values are the means of the two means (i.e., the mean of the selfed flowers and the mean of the outcrossed flowers). This data set was used in all of the analyses in the Supplemental Materials for which the sample size was ~136 (in some analyses, the sample size was reduced due to missing values).
DOI: 10.5061/dryad.t2ch6.1
title: Data from: Parenting behaviour is highly heritable in male stickleback
DOI: 10.5061/dryad.t2ch6.1/1.1
title: Parenting Heritability

description: 4 data files required to replicate our analyses, including: "Nesting Data Fathers.csv", "Nesting Data Sons.csv", "Size Data Fathers.csv", and "Size Data Sons.csv"
DOI: 10.5061/dryad.t2ch6.2
title: Data from: Parenting behaviour is highly heritable in male stickleback
DOI: 10.5061/dryad.t2ch6.2/1.2
title: Parenting Heritability Data and Analysis Files

description: 4 data files, a metadata file describing the columns in these files, and an analysis script file that can be used to recreate all analyses and figures.
DOI: 10.5061/dryad.t80gj/22
title: Supplemental File S1

description: Standard filtered SNPs detected in each of the 586 sorghum individuals.
DOI: 10.5061/dryad.t80gj/23
title: Supplemental File S2

description: Probable error-prone SNP genomic positions in the sorghum reference genome (version 2.1).
DOI: 10.5061/dryad.t80gj/24
title: Supplemental File S3

description: Non-replicate and likely EMS-induced homozygous SNPs in each of the 586 sorghum individuals.
DOI: 10.5061/dryad.t80gj/25
title: Supplemental File S4

description: Non-replicate, and likely EMS-induced heterozygous SNPs in each of the 586 sorghum individuals.
DOI: 10.5061/dryad.t80gj/26
title: Supplemental File S5

description: Counts of homozygous and heterozygous SNPs in all the 586 sequenced lines.
DOI: 10.5061/dryad.t80gj/27
title: Supplemental File S6

description: Replicate and likely false-negative EMS-induced homozygous G:C to A:T SNPs in each of the 586 sorghum individuals.
DOI: 10.5061/dryad.t80gj/28
title: Supplemental File S7

description: Replicate and likely false-negative EMS-induced heterozygous G:C to A:T SNPs in each of the 586 sorghum individuals.
DOI: 10.5061/dryad.v8921/1
title: Examined material

description: This is the list of specimens examined for each ichnotaxon.
DOI: 10.17632/263vfggwn3.1
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: Spectral parameters of eclipsing binaries
DOI: 10.17632/2v6jr2n76f.1
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: Spectral parameters of the variable stars
DOI: 10.17632/gbpm3whh9w.1
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: The parameters of active LAMOST spectral targets observed by LAMOST survey.
DOI: 10.17632/gcvjdnxy5v.1
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: The parameters of active LAMOST spectra observed by LAMOST survey.
DOI: 10.17632/kmf5yt2vsw.1
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: The star's parameters
DOI: 10.17632/y9pwd2p24z.1
title: DFMDEF18: A C-code for the double folding interaction potential of a spherical nucleus with deformed nucleus

description: This is a new version of the DFMDEF code published earlier. The new version is designed to obtain the nucleus–nucleus potential between two nuclei (one of which may be deformed) by using the double folding model (DFM). In particular the code enables to find the Coulomb barrier. The new version allows the user to employ his (her) own charge, proton, and neutron density distributions. The main functionalities of the original code (the nucleus–nucleus potential as a function of the incident angle and the distance between the centers of mass of colliding nuclei; the Coulomb barrier characteristics) have not been modified.
DOI: 10.5061/dryad.04k5q/4
title: Burger et al. µsat markers

description: Microsatellite data of mares and stimulus stallions
DOI: 10.5061/dryad.04k5q/5
title: Burger et al. MHC and r versus pregnancy

description: MHC types, pregnant or not, pairwise relatedness r, pairwise sharing of MHC antigens, semen cryopreserved or not, Mare age and breed
DOI: 10.5061/dryad.0jt43/1
title: kenjeres_2017_rans_sst.cas

description: ANSYS file (in .cas fromat): results + numerical mesh for RANS-SST model
DOI: 10.5061/dryad.0jt43/2
title: kenjeres_2017_rans_sst.dat

description: ANSYS file (in .dat format) results and numerical mesh for RANS-SST model
DOI: 10.5061/dryad.457fc/1
title: SAMDC 3'UTR
DOI: 10.5061/dryad.457fc/2
title: SAMDC 3'UTR
DOI: 10.5061/dryad.4k40j/31
title: Lib7_Index1_S1_L001_R1_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 7; Index 1; Read 1
DOI: 10.5061/dryad.4k40j/32
title: Lib5_Run2_Index1_S1_L001_R1_001.fastq

description: gzipped tar file containing Illumina sequence data from: Library 5 (second run); Index 1; Read 1