cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/xcf-va9-c8k
title: Hoplodrina ambigua ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-rgtc
title: Verkennend booronderzoek aan de Wagenweg 9 te Purmerend

description: &lt;p&gt;In april 2018 is door Archeologenbureau Argo een verkennend booronderzoek uitgevoerd in het plangebied Wagenweg 9 te Purmerend. Bij het onderzoek zijn in totaal vijf boringen geplaatst tot een diepte van maximaal 3,0 meter onder maaiveld. In boring 1 zijn van 55 tot 100 cm -mv &lt;br&gt;twee ophogingslagen uit vermoedelijk de 18e eeuw aangetroffen. Het lijkt te gaan om een lokale aanplemping van de Wheredijk. In de overige boringen zijn geen ophogingen of archeologische indicatoren aangetroffen. Hier werden onder de verstoorde bovenlaag slechts natuurlijke veen- en kleilagen aangeboord. De ophogingslagen in boring 1 worden, gezien de lokale aard en geringe dikte, archeologisch van weinig waarde geacht. Geadviseerd wordt dan ook om voor het onderhavige &lt;br&gt;plangebied af te zien van een archeologisch vervolgonderzoek of beschermende maatregelen.&lt;/p&gt;
DOI: 10.3535/egm-jbs-jfx
title: Helotropha leucostigma Hübner, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sy0-1bw-nmh
title: Euplexia lucipara (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8l7-89y-6dv
title: Acronicta (Acronicta) leporina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-rmad
title: PAN-00007084 - brooch Almgren 16

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00007084&lt;/p&gt;
DOI: 10.3535/04k-z22-pln
title: Hoplodrina octogenaria (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xsp-hyw-qg5
title: Phlogophora meticulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v5w-csb-1bt
title: Amphipoea fucosa Freyer, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-rrt8
title: PAN-00046966 - pseudo coin brooch cast A2

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00046966&lt;/p&gt;
description: Modified: 2019-10-11T16:55:25+02:00
DOI: 10.3535/tva-ces-hgt
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2km-e9e-vq7
title: Caradrina (Paradrina) clavipalpis (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fqp-4r6-301
title: Hoplodrina octogenaria (Goeze, 1781)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-rwq6
title: PAN-00087989 - tobacco pipe

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00087989&lt;/p&gt;
description: Modified: 2021-07-29T09:24:47+02:00
DOI: 10.3535/4mf-l2h-bcv
title: Nymphalidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kvq-34g-3gx
title: Acronicta (Acronicta) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qgk-4n9-dgj
title: Hesperiidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-rzky
title: Bureauonderzoek, Nijlandseweg 14 te Opheusden
title: SYNTHEGRA 2006 097

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
DOI: 10.3535/ysx-n6f-k4s
title: Hydraecia micacea Esper, 1789

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0rc-zwy-jx4
title: Luperina testacea [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6wc-6xa-0js
title: Globia algae Esper

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0x-red-q54
title: Caradrina (Caradrina) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-t9te
title: Archeologisch Bureauonderzoek en Inventariserend Veldonderzoek door middel van grondboringen; Nieuw Agrarisch Bedrijf, Tiendweg/Kerkweg, Noordeloos, Gemeente Giessenlanden
title: SOB 2009 WILG.645

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
DOI: 10.3535/1p8-03q-53q
title: Hoplodrina ambigua ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b63-a34-vse
title: Amphipoea lucens Freyer, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.qsph9x
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cinara cupressi cupressi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090421-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/kfg-zeh-y1n
title: Amphipoea oculea Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-tb74
title: PAN-00142053 - oval to half round buckle, broadened front with knobs

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00142053&lt;/p&gt;
description: Modified: 2023-11-22T15:13:52+01:00
DOI: 10.3535/7q1-fhk-6lt
title: Apamea (Apamea) monoglypha (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ygq-0p9-xql
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/28t-kb6-4p9
title: Euplexia lucipara (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-tkv6
title: PAN-00057206 - early medieval disc brooch with central cell variant A1

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00057206&lt;/p&gt;
description: Modified: 2019-07-17T09:11:20+02:00
DOI: 10.3535/aby-b36-abc
title: Helotropha leucostigma Hübner, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eh2-f7f-5xm
title: Archanara Walker, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/03g-y67-mvf
title: Apamea (Apamea) crenata (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-tt7n
title: Bureauonderzoek en karterend veldonderzoek d.m.v. boringen Waalbandijk te Waardenburg Gemeente Neerijnen
title: SYNTHEGRA 2007 401

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
description: &lt;p&gt;SYNTHEGRA 2007 401&lt;/p&gt;
DOI: 10.3535/4f1-kky-r2g
title: Photedes fluxa Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qcd-mm6-pdw
title: Archanara dissoluta Treitschke, 1825

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xl4-309-wgx
title: Apamea (Apamea) sordens (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qc2-9pl-gyr
title: Apamea (Apamea) crenata (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-u47e
title: Archeologisch onderzoek naar de kasteelplaats 'Recht van ter Leede'

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
DOI: 10.3535/9gr-2h1-kvl
title: Calamia tridens Hufnagel, 1766

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ahs-es4-syy
title: Pyrrhia umbra (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e3e-nbe-kre
title: Actinotia polyodon (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.em8ac2
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mindarus kinseyi Voegtlin, 1995",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090420-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-xrd-u83f
title: PAN-00034406 - eye brooch variant C2

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00034406&lt;/p&gt;
description: Modified: 2019-10-11T15:37:26+02:00
DOI: 10.3535/8z7-pzh-vp4
title: Phlogophora meticulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwr-es2-y9x
title: Hoplodrina blanda ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.qswv8w
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cinara pinivora (Wilson, 1919)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 108 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090419-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/8gy-9mm-s6f
title: Apamea (Apamea) unanimis (Hübner, 1813)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-u9z8
title: Archeologisch bureau- en booronderzoek voor Bachstraat 1 te Tiel
title: ZAN 405

description: &lt;p&gt;In opdracht van de ROC Rivor heeft VUhbs archeologie een archeologisch bureauonderzoek en verkennend booronderzoek uitgevoerd voor Bachstraat 1 te Tiel. Binnen het plangebied zal nieuwbouw worden gerealiseerd. De werkzaamheden die met deze ontwikkeling gepaard gaan, zullen de bodem en de eventueel aanwezige archeologische resten mogelijk verstoren. Conform de Wet op de Archeologische Monumentenzorg1 dient het plangebied daarom eerst te worden onderzocht op de aanwezigheid van archeologische resten. Daartoe is een bureauonderzoek uitgevoerd, waarin een specifiek verwachtingsmodel is opgesteld. Dit verwachtingsmodel is getoetst door middel van een&lt;br&gt;verkennend booronderzoek. Het archeologisch onderzoek is uitgevoerd conform de eisen die gesteld worden in de Kwaliteitsnorm voor de Nederlandse Archeologie (KNA versie 3.3).2 Het veldwerk is&lt;br&gt;uitgevoerd op 30 oktober 2015 door drs. K.A. Hebinck. Voorafgaand is het bureauonderzoek uitgevoerd door drs. K.A. Hebinck.&lt;/p&gt;
description: &lt;p&gt;ZAN 405&lt;/p&gt;
DOI: 10.3535/078-ye0-ag0
title: Hoplodrina ambigua ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yzz-p3e-9m6
title: Lenisa geminipuncta Haworth, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34740/kaggle/dsv/12364112
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.3535/nwx-a56-3ng
title: Globia sparganii Esper

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-v6tw
title: PAN-00020663 - coin/coin-related, anoniem, (penning, token)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00020663&lt;/p&gt;
description: Modified: 2019-10-04T09:13:21+02:00
DOI: 10.3535/ljq-av6-qwn
title: Apamea (Apamea) unanimis (Hübner, 1813)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/17s-j5t-ptn
title: Charanyca (Charanyca) trigrammica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rtn-nnz-lv5
title: Craniophora ligustri ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-vz5m
title: PAN-00014362 - high-arched wire brooch variant A

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00014362&lt;/p&gt;
DOI: 10.3535/7pe-jkf-ppa
title: Calamia tridens Hufnagel, 1766

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yfy-yv5-fa8
title: Actinotia polyodon (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nmh-2cd-hl3
title: Caradrina (Caradrina) Ochsenheimer, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z2v-ezy-5tm
title: Hoplodrina ambigua ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-vzxk
title: PAN-00029618 - coin/coin-related, C. Hosidius C.f. Geta, denarius

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00029618&lt;/p&gt;
description: Modified: 2020-08-14T10:28:49+02:00
DOI: 10.3535/75q-g9p-f2s
title: Apamea (Apamea) crenata (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8wz-ram-cyd
title: Gortyna flavago [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eac-w2h-ct0
title: Acronicta (Subacronicta) Kozhanchikov, 1950

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w0b-9l3-j2w
title: Archanara dissoluta Treitschke, 1825

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-w8fd
title: Archeologisch bureauonderzoek Zonnepark Krimweg te Coevorden Gemeente Coevorden
title: KSP Archeologie vof

description: &lt;p&gt;In opdracht van Eelerwoude heeft KSP Archeologie een archeologisch bureauonderzoek uitgevoerd voor de locatie aan de Krimweg in Coevorden (gemeente Coevorden). Het onderzoek is uitgevoerd voor de aanvraag van een bestemmingsplanwijziging voor de bouw van een zonnepark.&lt;/p&gt;&lt;p&gt;Het doel van het archeologische bureauonderzoek was het opstellen van een gespecificeerde archeologische verwachting voor het plangebied. Op basis van de landschappelijke ligging binnen een laaggelegen veengebied, de archeologische vondstlocaties uit de omgeving en de ontzanding van het westelijke deel van het plangebied tot ca. 10 m -mv, is aan het westelijke deel van het plangebied geen verwachting meer toegekend en aan het oostelijke deel een lage verwachting voor zowel vuursteenvindplaatsen uit het Laat-Paleolithicum tot en met het Neolithicum als voor nederzettingsresten uit het Neolithicum tot en met de Nieuwe Tijd.&lt;/p&gt;&lt;p&gt;Op grond van de afgravingen die in het verleden binnen het westelijke deel van het plangebied hebben plaatsgevonden tot ca. 10 m -mv, waardoor daar geen archeologische verwachting meer van toepassing is, de lage archeologische verwachting in het oostelijke deel van het plangebied en het feit dat het te verstoren oppervlak in het gehele plangebied minder dan 500 m2 (slechts 342 m2) bedraagt, adviseert KSP Archeologie geen archeologisch vervolgonderzoek.&lt;/p&gt;
description: &lt;p&gt;KSP Rapport : 17086&lt;/p&gt;
description: Date: 2019-04-12
DOI: 10.3535/m7n-2q9-sql
title: Apamea (Apamea) remissa (Hübner)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pvy-7t0-5sx
title: Calamia tridens Hufnagel, 1766

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/183-2b1-pnv
title: Arenostola phragmitidis Hübner, 1803

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-xrd-wd88
title: PAN-00004200 - high-arched wire brooch variant A

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00004200&lt;/p&gt;
description: Modified: 2019-04-25T10:30:14+02:00
DOI: 10.3535/8fk-nwn-ff6
title: Acronicta (Acronicta) leporina (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9gn-xj4-xpm
title: Coenobia rufa Haworth, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l82-xqs-r7k
title: Phlogophora meticulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xry-pn1-b0t
title: Apamea (Apamea) anceps ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1gf-z45-14n
title: Photedes Lederer, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kdz-k0j-tat
title: Amphipyra (Amphipyra) tragopoginis (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.achg5y
title: Occurrence Download

description: A dataset containing 2989884986 species occurrences available in GBIF matching the query:
{
 "Year" : [
 "1954-2025"
 ]
}

 The dataset includes 2989884986 records from 65880 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089290-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7vk-nxg-g7k
title: Hoplodrina ambigua ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jrr-p2h-64v
title: Photedes fluxa Hübner, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15727330
title: Nesotrochidae, fam. nov. – a new name for the New World cave rails Nesotrochis spp., sister taxon of the New Zealand adzebills (Aptornithidae)

description: Data associated with the publication Nesotrochidae, fam. nov. ‒ a new name for the New World cave rails Nesotrochis spp., sister taxon of the New Zealand adzebills (Aptornithidae).

The dataset comprises three categories of data:

New assemblies of mitochondrial genomes for Mentocrex kioloides (complete, circular) and Rallicula forbesi (partial), both from the Bird10K (B10K) consortium. These are assembled from whole-genome sequencing data and annotated through alignment-and-transfer followed by manual curation. Files made available are the sequences (.fasta), annotations in GFF3 format (.gff), and sequences and annotations combined in GenBank flatfile format (strict and not strict; .gb). File prefix: MtAssembly_. Metadata for the two samples:



Madagascar Forest Rail Mentocrex kioloides: Adult male, collected 10 Jan 2009 at Moramanga (18.78°S, 48.3232°E), Ambatovy-Analamay Forest, Madagascar, by Marie Jeanne Raherilalao. B10K id: B10K-D-MAD-204.

Forbes's Forest Rail Rallicula forbesi: Male, collected 5 Oct 2015 at Denge Numbu (5.7625°S, 145.1983°E), Madang Province, Papua New Guinea, during the Zoological Museum University of Copenhagen (ZMUC) 2015 Papua expedition. B10K id: 150322.


Alignments of concatenated coding sequences from eleven mitochondrial genes, covering Ralloidea and gruid outgroups. Sequence names include species and either GenBank accession number or voucher number for novel assemblies. Available in nexus (.nex) and phylip (.phy) format, with an additional three-field text file (.txt) defining CDS ranges. File prefix: Alignment_.

BEAST2 input and output files from phylogenetic analyses. These include the alignment used with third position RY-coded (.nex), the BEAST2 input file with operators optimised (.xml), the raw output files (.log; .trees) from two replicate 100-million generation runs at different seeds, and maximum credibility clade trees created using TreeAnnotator (.MCC_avgHeight[.Fig2].trees), with replicate 1 corresponding to Figure 2 of the paper. For details, see Material and Methods. File prefix: Beast2_.
DOI: 10.3535/xzm-eab-mf9
title: Caradrina (Paradrina) clavipalpis (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.15727329
title: Nesotrochidae, fam. nov. – a new name for the New World cave rails Nesotrochis spp., sister taxon of the New Zealand adzebills (Aptornithidae)

description: Data associated with the publication Nesotrochidae, fam. nov. ‒ a new name for the New World cave rails Nesotrochis spp., sister taxon of the New Zealand adzebills (Aptornithidae).

The dataset comprises three categories of data:

New assemblies of mitochondrial genomes for Mentocrex kioloides (complete, circular) and Rallicula forbesi (partial), both from the Bird10K (B10K) consortium. These are assembled from whole-genome sequencing data and annotated through alignment-and-transfer followed by manual curation. Files made available are the sequences (.fasta), annotations in GFF3 format (.gff), and sequences and annotations combined in GenBank flatfile format (strict and not strict; .gb). File prefix: MtAssembly_. Metadata for the two samples:



Madagascar Forest Rail Mentocrex kioloides: Adult male, collected 10 Jan 2009 at Moramanga (18.78°S, 48.3232°E), Ambatovy-Analamay Forest, Madagascar, by Marie Jeanne Raherilalao. B10K id: B10K-D-MAD-204.

Forbes's Forest Rail Rallicula forbesi: Male, collected 5 Oct 2015 at Denge Numbu (5.7625°S, 145.1983°E), Madang Province, Papua New Guinea, during the Zoological Museum University of Copenhagen (ZMUC) 2015 Papua expedition. B10K id: 150322.


Alignments of concatenated coding sequences from eleven mitochondrial genes, covering Ralloidea and gruid outgroups. Sequence names include species and either GenBank accession number or voucher number for novel assemblies. Available in nexus (.nex) and phylip (.phy) format, with an additional three-field text file (.txt) defining CDS ranges. File prefix: Alignment_.

BEAST2 input and output files from phylogenetic analyses. These include the alignment used with third position RY-coded (.nex), the BEAST2 input file with operators optimised (.xml), the raw output files (.log; .trees) from two replicate 100-million generation runs at different seeds, and maximum credibility clade trees created using TreeAnnotator (.MCC_avgHeight[.Fig2].trees), with replicate 1 corresponding to Figure 2 of the paper. For details, see Material and Methods. File prefix: Beast2_.
DOI: 10.3535/660-jbm-x2q
title: Bryophila (Bryophila) domestica (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.