cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4487216.v1
title: HyLogging unconventional petroleum core from the Cooper Basin, South Australia

description: The Cooper Basin is currently Australia's premier onshore hydrocarbon-producing province and hosts a range of unconventional gas play types, including the very extensive basin-centred and tight gas accumulations in the Gidgealpa Group, both shallow and deep dry coal seam gas associated with the Patchawarra and Toolachee formations, as well as the shale gas plays in the Murteree and Roseneath shales. Characterisation of mineralogical properties of shales is critical to hydraulic fracture design and development of unconventional hydrocarbon resources. Properties are sensitive to variations in mineralogy, especially clays, and historically, acquisition of a suite of rock mechanics analyses has been on a point-source basis rather than on a continuous sampling approach, which is uncommon. In this paper, a near-continuous 382 m cored section, comprising the lower Permian Daralingie Formation, Roseneath and Murteree shales, the Epsilon Formation and the top portion of the Patchawarra Formation from Holdfast-1 well (DH261958) in the southern Cooper Basin, was measured using robotic core scanning spectroscopy with automated mineral identification. HyLogger 3 incorporates visible, near infrared, shortwave infrared and thermal infrared hyperspectral measurements recorded every 0.8 cm along the core at the rate of approximately 1 m per minute. These data are co-registered with a high-resolution image and a laser profile of the core. X-ray diffraction and thin-section petrology from the Holdfast-1 well-completion report (Beach Energy, 2011) provided relative proportions of minerals including quartz, kaolinite, dickite, muscovite, illite, chlorite and siderite that enabled the modelled <i>vs</i> actual mineralogies to be constrained in the thermal infrared with a correlation coefficient of 0.85 for quartz, 0.79 for muscovite and 0.68 for kaolin; illite and siderite were more poorly correlated. HyLogger logging, when integrated with other petrophysical and analytical core data, provides a useful tool to better understand unconventional reservoirs and may assist in identification of zones that are conducive to fracture stimulation.
DOI: 10.6084/m9.figshare.4487210
title: Functional Connectivity Anomalies in Adolescents with Psychotic Symptoms

description: (second level analysis to read with SPM/CONN)
DOI: 10.6084/m9.figshare.4487213.v1
title: Reflectance spectroscopic characterisation of mineral alteration footprints associated with sediment-hosted gold mineralisation at Mt Olympus (Ashburton Basin, Western Australia)

description: Hydrothermal ore deposits are typically characterised by footprints of zoned mineral assemblages that extend far beyond the size of the orebody. Understanding the mineral assemblages and spatial extent of these hydrothermal footprints is crucial for successful exploration, but is commonly hindered by the impact of regolith processes on the Earth's surface. Hyperspectral drill core (HyLogger™-3) data were used to characterise alteration mineralogy at the Mt Olympus gold deposit located 35 km southeast of Paraburdoo along the Nanjilgardy Fault within the northern margin of the Ashburton Basin in Western Australia. Mineralogy interpreted from hyperspectral data over the visible to shortwave (400–2500 nm) and thermal (6000–14500 nm) infrared wavelength ranges was validated with X-ray diffraction and geochemical analyses. Spaceborne multispectral (ASTER) and airborne geophysical (airborne electromagnetic, AEM) data were evaluated for mapping mineral footprints at the surface and sub-surface. At the deposit scale, mineral alteration patterns were identified by comparing the most abundant mineral groups detected in the HyLogger data against lithology logging and gold assays. Potential hydrothermal alteration phases included Na/K-alunite, kaolin phases (kaolinite, dickite), pyrophyllite, white mica, chlorite and quartz, representing low-<i>T</i> alteration of earlier greenschist metamorphosed sediments. The respective zoned mineral footprints varied depending on the type of sedimentary host rock. Siltstones were mainly characterised by widespread white-mica alteration with proximal kaolinite alteration or quartz veining. Sandstones showed (1) distal white mica, intermediate dickite, and proximal alunite + kaolinite or (2) widespread white-mica alteration with associated intervals of kaolinite. In both, sandstones and siltstones, chlorite was distal to gold mineralisation. Conglomerates showed distal kaolinite/dickite and proximal white-mica/dickite alteration. Three-dimensional visualisation of the gold distribution and spatially associated alteration patterns around Mt Olympus revealed three distinct categories: (1) several irregular, poddy, SE-plunging zones of &gt;0.5 ppm gold intersected by the Zoe Fault; (2) sulfate alteration proximal to mineralisation, particularly on the northern side of the Mt Olympus open pit; and (3) varying Al<sup>IV</sup>Al<sup>VI</sup>Si<sup>IV</sup><sub>–1</sub>(Mg,Fe)<sup>VI</sup><sub>–1</sub> composition of white micas with proximity to gold mineralisation. Chlorite that developed during regional metamorphic or later hydrothermal alteration occurs distal to gold mineralisation. ASTER mineral mapping products, such as the MgOH Group Content used to map chlorite (±white mica) assemblages, showed evidence of correlation to mapped, local structural features and unknown structural or lithological contacts as indicated by inversion modelling of AEM data.
DOI: 10.6084/m9.figshare.4487210.v1
title: Functional Connectivity Anomalies in Adolescents with Psychotic Symptoms

description: (second level analysis to read with SPM/CONN)
DOI: 10.6073/pasta/959e5a0130f1658523765bf23d7b5fda
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 10 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-10 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-10 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.6084/m9.figshare.4486541
title: Figure 4

description: relationships of yearly average temperature and climate normal<br>
DOI: 10.6084/m9.figshare.4486580
title: Intracanalicular Optic Nerve Swelling and Signal Change in Fulminant Untreated Idiopathic Intracranial Hypertension

description: The role of the optic canal in the pathogenesis of papilloedema has been under scrutiny recently. Whether a larger canal precedes more severe papilloedema or is the result of bone remodelling from chronically raised pressure across a pressure gradient is not clear. The authors present the magnetic resonance imaging findings of a 29-year-old female with fulminant and untreated idiopathic intracranial hypertension. Imaging showed focal expansion and intrinsic signal changes of the intracanalicular optic nerve. The authors discuss the possibility of either fluid accumulation within the optic nerves from a water hammer effect across blocked optic canals resulting from the steep pressure gradient or opticomalacia (optic nerve softening) from chronic ischaemia.
DOI: 10.6084/m9.figshare.4486541.v1
title: Figure 4

description: relationships of yearly average temperature and climate normal<br>
DOI: 10.6084/m9.figshare.4486580.v1
title: Intracanalicular Optic Nerve Swelling and Signal Change in Fulminant Untreated Idiopathic Intracranial Hypertension

description: The role of the optic canal in the pathogenesis of papilloedema has been under scrutiny recently. Whether a larger canal precedes more severe papilloedema or is the result of bone remodelling from chronically raised pressure across a pressure gradient is not clear. The authors present the magnetic resonance imaging findings of a 29-year-old female with fulminant and untreated idiopathic intracranial hypertension. Imaging showed focal expansion and intrinsic signal changes of the intracanalicular optic nerve. The authors discuss the possibility of either fluid accumulation within the optic nerves from a water hammer effect across blocked optic canals resulting from the steep pressure gradient or opticomalacia (optic nerve softening) from chronic ischaemia.
DOI: 10.6084/m9.figshare.4486247
title: Fig 7 Histogram data

description: histogram
DOI: 10.6084/m9.figshare.4486250
title: Fig 8 Supporting Data

description: xl file<br>
DOI: 10.6084/m9.figshare.4486244
title: Supporting data for fig 7

description: data extracted from MODIS image<br>
DOI: 10.6084/m9.figshare.4486247.v1
title: Fig 7 Histogram data

description: histogram
DOI: 10.6084/m9.figshare.4486250.v1
title: Fig 8 Supporting Data

description: xl file<br>
DOI: 10.6084/m9.figshare.4486238
title: Supporting file for fig 5 and 6

description: data calibration and validation for model<br>
DOI: 10.6084/m9.figshare.4486241
title: Supporting Fig 5 and 6 second file

description: data calibration and validation<br>
DOI: 10.6084/m9.figshare.4486235
title: Fig 3 and Fig 4 Supporting file with yearly average temperature and relationships

description: year selection based on average air temperature<br>
DOI: 10.6084/m9.figshare.4486244.v1
title: Supporting data for fig 7

description: data extracted from MODIS image<br>
DOI: 10.6084/m9.figshare.4486232
title: Gap Filling Concept Hypothetical

description: gap filling algorithm concept with hypothetical data set<br>
DOI: 10.6084/m9.figshare.4486238.v1
title: Supporting file for fig 5 and 6

description: data calibration and validation for model<br>
DOI: 10.6084/m9.figshare.4486226
title: Five major cities in Alberta with locations

description: location of major cities<br>
DOI: 10.6084/m9.figshare.4486229
title: Fig 1 Supporting file with weather stations data

description: location of weather stations<br>
DOI: 10.6084/m9.figshare.4486232.v1
title: Gap Filling Concept Hypothetical

description: gap filling algorithm concept with hypothetical data set<br>
DOI: 10.6084/m9.figshare.4486235.v1
title: Fig 3 and Fig 4 Supporting file with yearly average temperature and relationships

description: year selection based on average air temperature<br>
DOI: 10.6084/m9.figshare.4486223
title: MODIS data format used

description: Explanation of MODIS data used<br>
DOI: 10.6084/m9.figshare.4486220
title: Fig 1 _ Lat n Long Weather Stations.xlsx

description: Latitude and longitude of weather stations available in Alberta with the information we have required<br>
DOI: 10.6084/m9.figshare.4486223.v1
title: MODIS data format used

description: Explanation of MODIS data used<br>
DOI: 10.6084/m9.figshare.4486226.v1
title: Five major cities in Alberta with locations

description: location of major cities<br>
DOI: 10.6084/m9.figshare.4486229.v1
title: Fig 1 Supporting file with weather stations data

description: location of weather stations<br>
DOI: 10.6084/m9.figshare.4486220.v1
title: Fig 1 _ Lat n Long Weather Stations.xlsx

description: Latitude and longitude of weather stations available in Alberta with the information we have required<br>
DOI: 10.6084/m9.figshare.4485962
title: cDNA-AFLP analysis of 1BL.1RS under water-deficit stress and development of wheat-rye translocation-specific markers

description: Drought is a major stressor that severely hampers the production of many important crops. The short arm of rye (<i>Secale cereale</i>) chromosome 1 contains favourable stress-resistance alleles and is thus widely used in wheat (<i>Triticum aestivum</i>) breeding to generate 1BL.1RS translocation lines. In this study, 1BL.1RS-specific drought-responsive genes were identified using cDNA-amplified fragment length polymorphism (AFLP) analysis. Among the 144 transcript-derived fragments (TDF) differentially expressed in the 1BL.1RS line, we identified the function and chromosomal position of 84 TDF using public databases. Real-time PCR was performed to validate the results of cDNA-AFLP, and four TDF were significantly up-regulated. Furthermore, we developed two wheat-rye translocation-specific markers by comparing the TDF from the short arms of wheat and rye chromosome 1. One is specific to 1BL.1RS and the other is specific to 1AL.1RS and 1BL.1RS. Combinational use of both markers will be helpful to breed wheat possessing 1RS.
DOI: 10.6084/m9.figshare.4485962.v1
title: cDNA-AFLP analysis of 1BL.1RS under water-deficit stress and development of wheat-rye translocation-specific markers

description: Drought is a major stressor that severely hampers the production of many important crops. The short arm of rye (<i>Secale cereale</i>) chromosome 1 contains favourable stress-resistance alleles and is thus widely used in wheat (<i>Triticum aestivum</i>) breeding to generate 1BL.1RS translocation lines. In this study, 1BL.1RS-specific drought-responsive genes were identified using cDNA-amplified fragment length polymorphism (AFLP) analysis. Among the 144 transcript-derived fragments (TDF) differentially expressed in the 1BL.1RS line, we identified the function and chromosomal position of 84 TDF using public databases. Real-time PCR was performed to validate the results of cDNA-AFLP, and four TDF were significantly up-regulated. Furthermore, we developed two wheat-rye translocation-specific markers by comparing the TDF from the short arms of wheat and rye chromosome 1. One is specific to 1BL.1RS and the other is specific to 1AL.1RS and 1BL.1RS. Combinational use of both markers will be helpful to breed wheat possessing 1RS.
DOI: 10.6084/m9.figshare.4485395
title: Spectral Tissue sensing to identify intra- and extravascular needle placement - collected spectra

description: Spectra collected during a study into discriminating intra- and extravascular needle placement using spectroscopy.
DOI: 10.6084/m9.figshare.4484399
title: Database 7

description: Dataset 7 phase 2
DOI: 10.6084/m9.figshare.4484435
title: SPATIAL ANALYSIS OF HANDWRITTEN TEXTS AS AN INDICATOR OF COGNITIVE CONTROL

description: We compared the heterogeneity of handwritten texts in tasks with different cognitive demands; transcription and exposition about an autobiographical episode. The heterogeneity of texts was analyzed with lacunarity, a non-linear measure of geometric patterns. Lacunarity of handwritten texts was significantly lower in transcription than in exposition. These effects were verified in a task that compared a veridical and a fictitious version of a personal event. Lacunarity was lower in veridical than fictitious texts. We contend that differences in lacunarity of handwritten texts reveal the degree of automaticity in handwriting.
DOI: 10.6084/m9.figshare.4485395.v1
title: Spectral Tissue sensing to identify intra- and extravascular needle placement - collected spectra

description: Spectra collected during a study into discriminating intra- and extravascular needle placement using spectroscopy.
DOI: 10.6084/m9.figshare.4484399.v1
title: Database 7

description: Dataset 7 phase 2
DOI: 10.6084/m9.figshare.4484348
title: Database 2

description: Dataset 3 phase 2
DOI: 10.6084/m9.figshare.4484435.v1
title: DataRepositoryPlos2017.xlsx

description: We compared the heterogeneity of handwritten texts in tasks with different cognitive demands; transcription and exposition about an autobiographical episode. The heterogeneity of texts was analyzed with lacunarity, a non-linear measure of geometric patterns. Lacunarity of handwritten texts was significantly lower in transcription than in exposition. These effects were verified in a task that compared a veridical and a fictitious version of a personal event. Lacunarity was lower in veridical than fictitious texts. We contend that differences in lacunarity of handwritten texts reveal the degree of automaticity in handwriting.
DOI: 10.6084/m9.figshare.4484348.v1
title: Database 2

description: Dataset 3 phase 2
DOI: 10.6084/m9.figshare.4484150
title: System identification of neural mechanisms from trial-by-trial motor behaviour: modelling of learning, impairment and recovery

description: System identification is an engineering technique used to build mathematical models of dynamic systems from observed data. In neuroscience research, system identification has been used to adapt robotic devices for measurements and to apply perturbations. These techniques have been shown to be useful tools to investigate brain mechanisms of motor learning processes and motor dysfunctions. This paper reviews the application of system identification to motor behavioural data pertaining to the interruption of specific neural mechanisms. This system identification technique could reveal adaptation and generalisation functions in neural mechanisms for motor tasks to fit experimental data measured by the robotic devices in a discrete state-space model. When comparing constructed models between persons with neurological disabilities and healthy control subjects, system identification could be used to identify impaired abilities. Furthermore, a recent study indicated that such a discrete state-space model may predict recovery of motor function after stroke. Therefore, we suggest that the marriage between robotic devices and system identification will comprise a novel approach to clinical assessment and aid in the design of patient rehabilitation protocols.
DOI: 10.6084/m9.figshare.4484159
title: Genetic and morphological variability analysis revealed a complex network in South-Eastern Sicilian <b><i>Helichrysum</i></b> occurrences

description: The <i>Helichrysum</i> occurrences spread over Hyblaean area (Sicily) are characterized by an unusual richness of morphotype variants which ancestral origin is still unclear. Morphological and genetic variability of seven populations attributable to six taxonomic entities (<i>Helichrysum archimedeum</i>, <i>H. stoechas</i> subsp. <i>conglobatum</i>, <i>H. stoechas</i> subsp. <i>barrelieri</i>, <i>H. hyblaeum</i>, <i>H. pendulum</i> and <i>H. nebrodense</i>) was examined, in order to highlight their relationships within the <i>Helichrysum</i> sect. Stoechadina. Morphological analysis showed a clear isolation of populations referred to <i>H. pendulum</i>, <i>H. nebrodense</i> and <i>H. stoechas</i> subsp. <i>conglobatum</i>. Whereas, genetic structure profiling, with 21 ISSRs, displayed a strong genetic relationship within <i>H. stoechas</i> and <i>H. archimedeum</i> accessions, where the latter exhibited evident genetic similarity with <i>H. hyblaeum</i>. Analysis of <i>rbcL</i> cpDNA fragment allowed to identify a shared haplotype between <i>H. stoechas</i> and <i>H. rupestre</i> species, while, through the construction of haplotype network based on <i>trnL</i>-<i>F/rpl32</i> region, the sampled accessions were properly differentiated as confirmed by the cpDNA consensus network. These results confirmed the high affinity of <i>H. archimedeum</i> with other <i>H. stoechas</i> populations and the closer relationship of <i>H. hyblaeum</i> to <i>H. stoechas</i> respect to <i>H. rupestre</i>.
DOI: 10.6084/m9.figshare.4484435.v3
title: DataRepositoryPlos2017.xlsx

description: We compared the heterogeneity of handwritten texts in tasks with different cognitive demands; transcription and exposition about an autobiographical episode. The heterogeneity of texts was analyzed with lacunarity, a non-linear measure of geometric patterns. Lacunarity of handwritten texts was significantly lower in transcription than in exposition. These effects were verified in a task that compared a veridical and a fictitious version of a personal event. Lacunarity was lower in veridical than fictitious texts. We contend that differences in lacunarity of handwritten texts reveal the degree of automaticity in handwriting.
DOI: 10.6084/m9.figshare.4484150.v1
title: System identification of neural mechanisms from trial-by-trial motor behaviour: modelling of learning, impairment and recovery

description: System identification is an engineering technique used to build mathematical models of dynamic systems from observed data. In neuroscience research, system identification has been used to adapt robotic devices for measurements and to apply perturbations. These techniques have been shown to be useful tools to investigate brain mechanisms of motor learning processes and motor dysfunctions. This paper reviews the application of system identification to motor behavioural data pertaining to the interruption of specific neural mechanisms. This system identification technique could reveal adaptation and generalisation functions in neural mechanisms for motor tasks to fit experimental data measured by the robotic devices in a discrete state-space model. When comparing constructed models between persons with neurological disabilities and healthy control subjects, system identification could be used to identify impaired abilities. Furthermore, a recent study indicated that such a discrete state-space model may predict recovery of motor function after stroke. Therefore, we suggest that the marriage between robotic devices and system identification will comprise a novel approach to clinical assessment and aid in the design of patient rehabilitation protocols.
DOI: 10.6084/m9.figshare.4484159.v1
title: Genetic and morphological variability analysis revealed a complex network in South-Eastern Sicilian <b><i>Helichrysum</i></b> occurrences

description: The <i>Helichrysum</i> occurrences spread over Hyblaean area (Sicily) are characterized by an unusual richness of morphotype variants which ancestral origin is still unclear. Morphological and genetic variability of seven populations attributable to six taxonomic entities (<i>Helichrysum archimedeum</i>, <i>H. stoechas</i> subsp. <i>conglobatum</i>, <i>H. stoechas</i> subsp. <i>barrelieri</i>, <i>H. hyblaeum</i>, <i>H. pendulum</i> and <i>H. nebrodense</i>) was examined, in order to highlight their relationships within the <i>Helichrysum</i> sect. Stoechadina. Morphological analysis showed a clear isolation of populations referred to <i>H. pendulum</i>, <i>H. nebrodense</i> and <i>H. stoechas</i> subsp. <i>conglobatum</i>. Whereas, genetic structure profiling, with 21 ISSRs, displayed a strong genetic relationship within <i>H. stoechas</i> and <i>H. archimedeum</i> accessions, where the latter exhibited evident genetic similarity with <i>H. hyblaeum</i>. Analysis of <i>rbcL</i> cpDNA fragment allowed to identify a shared haplotype between <i>H. stoechas</i> and <i>H. rupestre</i> species, while, through the construction of haplotype network based on <i>trnL</i>-<i>F/rpl32</i> region, the sampled accessions were properly differentiated as confirmed by the cpDNA consensus network. These results confirmed the high affinity of <i>H. archimedeum</i> with other <i>H. stoechas</i> populations and the closer relationship of <i>H. hyblaeum</i> to <i>H. stoechas</i> respect to <i>H. rupestre</i>.
DOI: 10.6084/m9.figshare.4484138
title: Ctenophora Phylogeny Datasets and Core Orthologs

description: Data matrices, models used with RAxML, and inferred trees. Unless otherwise noted, all trees were inferred with RAxML using partitioning schemes and models in the model file. <br>Figures for ancestral state reconstruction using a posterior distribution of trees to incorporate uncertainty in branch-length estimates are included. <br>Pictures of species we sampled that we were able to photograph before obtaining tissue are included.<br><br>Core orthologs, for use with hamstr, that were used for ctenophore-centric data creation are also provided
DOI: 10.6084/m9.figshare.4484141
title: GeneSeqToFamily.zip

description: Supporting data for GeneSeqToFamily, the Ensembl Compara GeneTrees pipeline as a Galaxy workflow<br>