cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3c3r3/7
title: NT mtDNA tree (fully calibrated)

description: Timetree from divergence dating analysis in BEAST using NT coded mtDNA dataset, with topology constrained and 15 fossil calibrations plus one root calibration applied.
DOI: 10.5061/dryad.3c3r3/8
title: RY mtDNA tree (fully calibrated)

description: Timetree from divergence dating analysis in BEAST using RY coded mtDNA dataset, with topology constrained and 15 fossil calibrations plus one root calibration applied.
DOI: 10.5061/dryad.3c3r3/9
title: Exon nDNA tree (strict clock)

description: Timetree from strict clock divergence dating analysis in BEAST using exon nDNA dataset.
DOI: 10.5061/dryad.3c7m4/1
title: H361_Unique_Sequence_Tags

description: Unique reads and read counts obtained from deep sequencing of small RNA (~17-25 nt) from Common Carp Brain cells (CCBs) infected with Cyprinid Herpesvirus-3 (CyHV-3) H361 isolate. Fully intact 3’ adapter sequences are trimmed from the 3’ end of each unique read.
DOI: 10.5061/dryad.3c7m4/2
title: N076_Unique_Sequence_Tags

description: Unique reads and read counts obtained from deep sequencing of small RNA (~17-25 nt) from Common Carp Brain cells (CCBs) infected with Cyprinid Herpesvirus-3 (CyHV-3) N076 isolate. Fully intact 3’ adapter sequences are trimmed from the 3’ end of each unique read.
DOI: 10.5061/dryad.3k7v7/1
title: Appendix_1

description: Microsoft Excel (.xlsx) file of measurement data for extant and extinct species of Pan-Alcidae
DOI: 10.5061/dryad.3k7v7/2
title: Smith_Supplementary Data

description: Microsoft Word (.docx) file with supplementary data pertaining to "Evolution of body mass in the Pan-Alcidae (Aves, Charadriiformes): the effects of combining neontological and paleontological data" by N. Adam Smith. Includes explanation of abbreviations used in the Excel file of measurement data (Appendix_1).
DOI: 10.5061/dryad.5gn2j/1
title: Mean fruitset of open and supplementally pollinated shoots

description: Mean field level fruit set, sd and n for 78 blueberry fields with pollination treatment. Column codes are: Year (2009,2010,2011),Location (Neguac or St. Stephen), Field (unique field identifier, Honey (honey bee present or absent),Bumble (bumble bee present or absent), Leaf (leaf cutter bee present or absent), CFruitset%.mn (mean % fruitset of open pollinated shoots for each field),  CFruitset.sd (standard deviation fruitset of open pollinated shoots for each field) , CFruitset.n	(number of open pollinated shoots per field), SFruitset%.mn (mean % fruitset of supplementally pollinated shoots for each field),	SFruitset.sd  (standard deviation fruitset of open pollinated shoots for each field), 	SFruitset.n (number of supplementally pollinated shoots per field)
DOI: 10.5061/dryad.5gn2j/2
title: BlueberrySeedsetAllYearsAllLocations

description: Mean field level fruit set, sd and n for 78 blueberry fields with pollination treatment.  Column codes are: Year (2009, 2010, 2011), Location (Neguac or St. Stephen), Field (unique field identifiy), Honey (present or absent), Bumble (present or absent), Leaf (present or absent), CSeedset%.mn (mean % seedset of open pollinated shoots for each field),  	CSeedset.sd (standard deviation of seedset of open pollinated shoots for each field) , CSeedset.n	(number of open pollinated shoots per field that seeds were counted for), SSeedset%.mn (mean % seedset of supplementally pollinated shoots for each field),	SSeedset.sd  (standard deviation seedet of open pollinated shoots for each field), 	SSeedset.n (number of supplementally pollinated shoots per field)
DOI: 10.5061/dryad.5gn2j/3
title: PathAnalysisData

description: Data used in path analysis and figure 3 & 4 of Fulton et al. Column codes are in the readme file. Data set is from 24 fields in Neguac in each of two years.
DOI: 10.5061/dryad.5jv56/1
title: Preprocessed MR images, demographics and clinical assessments

description: You can find preprocessed magnetic resonance (MR) images, demographics of 30 patients with obsessive-compulsive disorder (OCD) and 34 age-/sex-matched healthy controls that were analyzed in the original article. Clinical assessments of Y-BOCS (Yale-Brown obsessive-compulsive scale) for the patients are included in the file.
DOI: 10.5061/dryad.68ff4/1
title: baseline_characteristics_primary_dryad

description: Dataset containing relevant baseline characteristics for those individuals included in the primary analysis investigating time from HIV seroconversion to HIV disease progression.
DOI: 10.5061/dryad.85k6p/1
title: Hatching data great tit study
DOI: 10.5061/dryad.85k6p/2
title: Nestling data great tit study
DOI: 10.5061/dryad.85k6p/3
title: Survival data great tit study
DOI: 10.5061/dryad.85k6p/4
title: Local recruitment great tit study
DOI: 10.5061/dryad.85k6p/5
title: SDI data
DOI: 10.5061/dryad.8sc5p/24
title: S11-2
DOI: 10.5061/dryad.8sc5p/25
title: S12-2
DOI: 10.5061/dryad.8sc5p/26
title: S13-2
DOI: 10.5061/dryad.8sc5p/27
title: S1-3
DOI: 10.5061/dryad.8sc5p/28
title: S2-3
DOI: 10.5061/dryad.8sc5p/29
title: S4-3
DOI: 10.5061/dryad.8sc5p/30
title: S5-3
DOI: 10.5061/dryad.8sc5p/31
title: S8-3
DOI: 10.5061/dryad.8sc5p/32
title: S9-3
DOI: 10.5061/dryad.b5k00/1
title: data Hegemann et al Partial migration

description: Excel table with 3 sheets. First sheet contains all raw data needed for Post-winter comparisons including all reproductive data, physiological data, morphological data and return rate as well as stable isotope values used for assigning birds as migrants, residents or unknown, respectively. From these table also comparisons between age and sex classes, consistency versus switching of strategies and tarsus length among switchers, obligate residents and obligate migrants can be extracted. Sheet 2 contains all data for the within-individual comparisons (longitudinal data). Sheet 3 contains data regarding the test for assortative mating.
DOI: 10.5061/dryad.dk3q0/1
title: Raw Data

description: Raw data
DOI: 10.5061/dryad.f54v6/1
title: Species and threat distributions in the Daly River catchment

description: This file contains, for each of the 864 subcatchments delineated in the Daly River catchment, the spatial distribution of the 45 freshwater fish species and the proportion of each subcatchment covered by grazing (used as estimate of threat in this study). The file also contains the latitude and longitude of the centroid of each subcatchment, so the information can be spatially explored.
DOI: 10.5061/dryad.f587b/2
title: alignments_for_phylogeny.tree

description: This file was generated by Phyml with the GTR+I+G model and the concatenated 4D-sites from 11 species.
DOI: 10.5061/dryad.md23g/1
title: DeLisle&Rowe_DATA

description: Data underlying all analyses in De lisle & Rowe 2015 Am. Nat.
DOI: 10.5061/dryad.nm13s/1
title: PLoS One Excel Main Datafile

description: Contains trait questionnaire, state affect, and behavioral task data derived from laboratory research with human participants. See ReadMe for variable descriptions.
DOI: 10.5061/dryad.p62h7/1
title: WanderingAlbatross
DOI: 10.5061/dryad.r1h4h/1
title: Simulations Data

description: We assayed different values for the number of populations N = {10, 100}, number of mating pairs K={20, 500}, coefficient of variation CV (0 to 1 with increments of 0.1), intrapopulation standard deviation σw = {0.1, 0.3, 0.45} and choice C (-1 to 1 with increments of 0.1), giving a total of 2,772 combinations.
DOI: 10.5061/dryad.sc14n/1
title: original data

description: From Table S2-4: Table S2. Data of the brain amine levels (pmol/brain) in founding and colony queens, Table S3. Data of the behavioural observation in control and OA-fed queens, Table S4. Data of the brain amine levels (pmol/brain) in control and OA-fed queens.
DOI: 10.5061/dryad.v56g3/1
title: Size and features of Ascomycota mating type loci

description: Cursory literature review of the size and features of Ascomycota mating type loci
DOI: 10.5061/dryad.v56g3/2
title: Annotation of the Sclerotinia homoeocarpa mating type locus

description: RepeatModeler, RepeatMasker, and GeneMark commands; repeat library; and gene models output from GeneMark-ES v2.3c beta
DOI: 10.5061/dryad.v56g3/3
title: Analysis of worldwide distribution of Sclerotinia homoeocarpa mating type genes

description: Analysis of clone-corrected ratios of mating type using binomial tests with simple continuity correction
DOI: 10.5061/dryad.v56g3/4
title: Analysis of duplicated MAT1-2-1 of Sclerotinia homoeocarpa

description: Amino acid sequences, alignments, and MetaPIGA run parameters used to compare the truncated copy of MAT1-2-1 found outside the mating type locus of the MAT1-1 Sclerotinia homoeocarpa strain MB-01
DOI: 10.5061/dryad.v56g3/5
title: Phylogeny of the mating type and flanking genes.

description: Sequences, alignments, and MetaPIGA run files used to infer the phylogenies of the mating type (MAT1-2-1, MAT1-2-4, MAT1-1-5, and MAT1-1-1) and flanking (APN2 and SLA2) genes.
DOI: 10.5061/dryad.v56g3/6
title: Repeat features of the Sclerotinia homoeocarpa mating type locus

description: Short sequence segments used to analyze the inverted and direct repeat features bordering the mating type idiomorphs.
DOI: 10.5061/dryad.v56g3/7
title: Sanger sequencing reads

description: Sanger reads used to sequence the mating type loci.
DOI: 10.5061/dryad.06575/1
title: Mitochondrial replacement crosses (briggsae maternal)

description: Total offspring & proportion male for all crosses where C. briggsae is the nuclear maternal parent
DOI: 10.5061/dryad.06575/2
title: Nigoni mitochondria replacement crosses

description: Mitochondrial replacement crosses. All crosses where the maternal nuclear genotype is C. nigoni
DOI: 10.5061/dryad.06575/3
title: Temperature & Haldane's rule

description: C. nigoni intraspecific crosses and C. nigoni x C. briggsae crosses at a range of temperatures. Columns show the paternal strain (AF16=briggsae, JU1421=nigoni). The total male offspring and female offspring produced each day is shown. e.g. D0_M shows the total male offspring laid on the first day after mating.
DOI: 10.5061/dryad.0g98k/1
title: Dryad data(Punzalan and Rowe 2015 Evolution)

description: Phenotypic (3 traits) and locality data for 7 species/subspecies of Phymata from museum specimens.  Additional museum/collection data associated with each individual (distinguished by the column 'ID') is available upon request.  Key  to column headers is provided on separate worksheet in the same file.
DOI: 10.5061/dryad.10b86/1
title: Experiment to estimate hard and soft selection on seedling emergence time

description: The experiment explored the impact of the general environment (climate) and the social environment (density and frequency of alternate phenotypes) on the selective advantage of early seedling emergence.  Two emergece phenotype, early and late, were generated by planting seeds on two dates weeks apart.   File contains indentifiers, stem size, leaf size and final seed pod production data by desinty, frequency and individual phenotype classes.
DOI: 10.5061/dryad.1mg5n/1
title: Mikolajewski et al. JEB

description: Abdominal measures for phenotypic integration in Leucorrhinia-species.
DOI: 10.5061/dryad.3530j/10
title: qPCR data for Takeout in females
DOI: 10.5061/dryad.3530j/11
title: qPCR data for Takeout in males
DOI: 10.5061/dryad.3530j/12
title: qPCR data for Thaumatin in females
DOI: 10.5061/dryad.3530j/13
title: qPCR data for Thaumatin in males
DOI: 10.5061/dryad.3530j/6
title: qPCR data for peptidoglycan recognition protein in males
DOI: 10.5061/dryad.3530j/7
title: qPCR data for vitellogenin 1 and vitellogenin 2 in males and females
DOI: 10.5061/dryad.3530j/8
title: qPCR data for Serine Protease in females
DOI: 10.5061/dryad.3530j/9
title: qPCR data for Serine Protease in males
DOI: 10.5061/dryad.3c3r3/15
title: Exon nDNA tree (nominally calibrated)

description: Timetree from nominally calibrated divergence dating analysis in BEAST using exon nDNA dataset and only a single root calibration.
DOI: 10.5061/dryad.3c3r3/17
title: Preferred tree (fully calibrated)

description: Timetree from divergence dating analysis in BEAST using preferred dataset (RY coded mtDNA plus exon nDNA), with topology constrained and 15 fossil calibrations plus one root calibration applied.
DOI: 10.5061/dryad.3c3r3/18
title: Preferred dataset XML

description: XML file containing alignments, calibrations, and model settings used for analysis of preferred dataset (RY coded mtDNA and exon nDNA).
DOI: 10.5061/dryad.3c3r3/19
title: RY mtDNA XML

description: XML file containing alignments, calibrations, and model settings used for analysis of RY coded mtDNA dataset.
DOI: 10.5061/dryad.3c3r3/20
title: NT mtDNA XML

description: XML file containing alignments, calibrations, and model settings used for analysis of NT coded mtDNA dataset.
DOI: 10.5061/dryad.3c3r3/21
title: Intron nDNA XML

description: XML file containing alignments, calibrations, and model settings used for analysis of intron nDNA dataset.
DOI: 10.5061/dryad.3c3r3/22
title: Extron nDNA XML

description: XML file containing alignments, calibrations, and model settings used for analysis of exon nDNA dataset.
DOI: 10.5061/dryad.3rg62/1
title: SSR and SNP markers discovered for Atlantic mackerel

description: SSRs: The 1,624 SSR markers detected in the Atlantic mackerel transcriptome. SSR names follow the format Ssco_[A]-[B] where [A] indicates the transcriptome contig where the SSR was detected and [B] indicates the number of SSR in the contig. SNPs:. The 80 validated SNPs sequences and their descriptive statistics. For each marker following information is provided: NCBI Submitter SNP (ss) accession numbers, reference and alternative alleles, call rate (%), minor allele frequency (MAF), global (pooling the three sampling locations) expected heterozygosity (He), global and per location deviation (p-value) from the Hardy-Weinberg equilibrium (HWE), and flanking sequence. SNP names follow the format [A]_[B] where [A] indicates the contig number and [B] indicates the SNP position in that contig. Target SNP is encoded in the sequence as [REF/ALT] where REF indicates the reference allele ALT indicates the alternative allele. * corresponds to p-value &lt; 0.0001. SIGN. means that at least 1 location is not in HWE for these markers. N.S. corresponds to not significant.
DOI: 10.5061/dryad.3rg62/10
title: Atlantic mackerel T2T and G2T alignment files (.bam)
DOI: 10.5061/dryad.3rg62/9
title: Atlantic mackerel transcriptome assembly (.fasta)
DOI: 10.5061/dryad.4gf06/1
title: Individual-level wild-caught fish morphometric data

description: Morphometric data for the wild-caught fish MANOVA.
DOI: 10.5061/dryad.5gn2j/4
title: beedistance2010

description: Data from figure 5 Fulton et al. Column codes are:  Individual (unique bee identifier) 	Date (date)	Site (field identifier)	Bee (species)	Flower Number (number of flowers visited by each individual)  Inflorescence (number of inflorescences visited) 	Distance(cm)
DOI: 10.5061/dryad.5gn2j/5
title: negtemp

description: Temperature data from hobo dataloggers used in fig. 6 in Fulton et al. Data are from 2010 only. Field codes are: Site (field identifier), Day (day of year), Mean (mean recorded temperature),  Min (minimum recorded temperature, Max (maximum recorded temperature).
DOI: 10.5061/dryad.5h5pf/1
title: Data for Stawski et al - The importance of mammalian torpor for survival in a post-fire landscape

description: Data for Stawski et al - The importance of mammalian torpor for survival in a post-fire landscape
DOI: 10.5061/dryad.61c8t/1
title: brain_231sample_genotype_data_with_key

description: Genotype data
DOI: 10.5061/dryad.61c8t/2
title: brain_231sample.ped

description: PLINK format ped file
DOI: 10.5061/dryad.61c8t/3
title: brain_231sample.map

description: PLINK format map file
DOI: 10.5061/dryad.61c8t/4
title: brain_231_sample_ageatdeath_covariate

description: Covariates
DOI: 10.5061/dryad.620jh/1
title: Marteau, McDonald & Patel_2015

description: ZIP file containing Microsoft XLS and Adobe pdf files of data and calculations on: Prescriptions issued, deaths and drug seizures
DOI: 10.5061/dryad.68ff4/2
title: hcv_data_primary_dryad

description: Dataset containing all HCV data from those individuals included in the primary analysis investigating time from HIV seroconversion to HIV disease progression.
DOI: 10.5061/dryad.68ff4/3
title: cd4_data_primary_dryad

description: Dataset containing all CD4 data from those individuals included in the primary analysis investigating time from HIV seroconversion to HIV disease progression.
DOI: 10.5061/dryad.68ff4/4
title: aids_primary_dryad

description: Dataset containing all AIDS data from those individuals included in the primary analysis investigating time from HIV seroconversion to HIV disease progression.
DOI: 10.5061/dryad.68ff4/5
title: deaths_primary_dryad

description: Dataset containing all mortality data from those individuals included in the primary analysis investigating time from HIV seroconversion to HIV disease progression.
DOI: 10.5061/dryad.68ff4/6
title: art_primary_dryad

description: Dataset containing all ART data from those individuals included in the primary analysis investigating time from HIV seroconversion to HIV disease progression.
DOI: 10.5061/dryad.68ff4/7
title: baseline_characteristics_decline_dryad

description: Dataset containing relevant baseline characteristics for those individuals included in the analysis investigating CD4 cell decline following HCV infection.
DOI: 10.5061/dryad.68ff4/8
title: hcv_data_decline_dryad

description: Dataset containing all HCV data for those individuals included in the analysis investigating CD4 cell decline following HCV infection.
DOI: 10.5061/dryad.68ff4/9
title: cd4_data_decline_dryad

description: Dataset containing all CD4 data from individuals included in the analysis investigating CD4 cell decline following HCV infection.
DOI: 10.5061/dryad.8bs2b/1
title: Cheirolepis otico-occipital

description: PLY file of the otico-occipital portion of the braincase of Cheirolepis.
DOI: 10.5061/dryad.8bs2b/2
title: Cheirolepis ethmoid

description: PLY file of the ethmoid portion of the braincase of Cheirolepis.
DOI: 10.5061/dryad.8bs2b/3
title: Cheirolepis hyomandibula

description: PLY file of the hyomandibula of Cheirolepis.
DOI: 10.5061/dryad.8sc5p/33
title: S11-3
DOI: 10.5061/dryad.8sc5p/34
title: S13-3
DOI: 10.5061/dryad.8sc5p/35
title: S14-3
DOI: 10.5061/dryad.8sc5p/36
title: S15-3
DOI: 10.5061/dryad.93d6c/1
title: Dsubobscura Heat tolerance from Chilean populations

description: The dataset contains heat tolerance measured in static and dynamic assays.
DOI: 10.5061/dryad.bh32c/1
title: Fire history and vegetation type at 173,294 sample points in the stone country of Kakadu National Park

description: Provided is: (1) fire history (1980-2011, derived from Landsat satellite imagery), including whether each sample point was burnt in each year and season of burn (early or late dry season); and (2) vegetation type (heathland, rainforest, or savanna woodland).
DOI: 10.5061/dryad.gv38r/1
title: Cost effectiveness of the NZ DIP guideline screening recommendations FINAL

description: This is the decision analytic model designed to compare the cost effectiveness of the 2-step and 3-step screening strategies described in the article.
DOI: 10.5061/dryad.k247v/1
title: Data_Sugie_and_Suzuki

description: Figure 2. Species accumulation curves of 6 samples obtained during the KH12-3 cruise. Sample information is provided as follows: sample 1: 5 m, 28°00’ N, 138°00’ E; sample 2: 75 m, 32°19’ N, 133°33’ E; sample 3: 43 m, 33°05’ N, 133°40’ E; sample 4: 75 m, 35°00’ N, 160°00’ E; sample 5: 5 m, 43°31’ N, 160°00’ E; sample 2: 75 m, 15°00’ N, 160°00’ E.

Figure 3. Relationships between (a) J′ calculated based on abundance (J′cell) and biomass (J′bio), and (b) 2E calculated based on abundance (2Ecell) and biomass (2Ebio). The dotted lines in (a) and (b) represent the 1:1 line. (c) Boxplot of J′bio/J′cell and 2Ebio/2Ecell. The upper and lower lines of the box represent the 75% and 25% values. The middle line in the box and circle represents the median and average of the ratios. Crosses represent maximum and minimum values. The ratio = 1 (dotted line), has the same meaning as the 1:1 line shown in Fig. 3a and 3b.

Figure 4. Rank order of (a) biomass and (b) abundance of diatoms from the North Pacific. (a-1) and (b-1) show the rank order (line, left axis) and corresponding equivalent spherical diameter (ESD: dots, right axis). Histograms (lower panels) represent the ESD distribution depending on the dominancy shown in (a-1) and (b-1); data were assembled (a-2) and (b-2) 10–100%, (a-3) and (b-3) 1–10%, (a-4) and (b-4) 0.1–1%, and (a-5) and (b-5) &lt;0.1% groups.
DOI: 10.5061/dryad.kr70r/1
title: Raw body size data

description: This table contains data pertaining to the raw body size (measured in pixels) of male and female seed beetles. "EL" denotes "elytra length", the proxy for body size. "Diet" is the quality of the dietary medium that the individual was reared from; "Order" is the order in which the mother of the individual was exposed (for example, "UN" denotes that the mother was first exposed to a "used" medium and then a "new" medium), and Family refers to the particular mother-father pairing the individual derived from). "Sex" is simply the sex of the individual ("m" for male and "f" or female).
DOI: 10.5061/dryad.kr70r/2
title: Male genital trait data

description: This table contains data pertaining to male seed beetles. The data are log-transformed. "EL" denotes elytra length, the proxy for body size used in this investigation. "Diet" is the quality of the dietary medium that the individual was reared from; "Order" is the order in which the mother of the individual was exposed (for example, "UN" denotes that the mother was first exposed to a "used" medium and then a "new" medium), and Family refers to the particular mother-father pairing the individual derived from). The other columns denote genital traits that are described in the paper itself.
DOI: 10.5061/dryad.kr70r/3
title: Female genital trait data

description: This table contains data pertaining to the genital traits of female seed beetles. "EL" denotes "elytra length", the proxy for body size used in this investigation. "Diet" is the quality of the dietary medium that the individual was reared from; "Order" is the order in which the mother of the individual was exposed (for example, "UN" denotes that the mother was first exposed to a "used" medium and then a "new" medium), and Family refers to the particular mother-father pairing the individual derived from). The other columns denote genital trait that are described in the paper itself. They are log-transformed values. "Log of EL" is included as well as raw EL, because of the need to use a generalized linear model for one of the traits, "Number of spines", which is a discrete rather than continuous variable.
DOI: 10.5061/dryad.nk23d/1
title: Trait means and SD

description: Mean and SD  of the fitness components survival, growth and fecundity for the 3-5 reproductive effort treatments in the Sølendet and Tågdalen populations of Dactylorhiza lapponica.
DOI: 10.5061/dryad.nm13s/2
title: PLoS One Excel EEfRT Trial Datafile

description: Contains trial-wise data from participant performances of the EEfRT task. See ReadMe file for more information.
DOI: 10.5061/dryad.vk070/1
title: Species Dataset

description: Includes all the bird species identified during the project, organized by family, and the following data: their scientific and English names, their distribution (country), their habitat, diet and weight from the literature, what analyses they are included in for the article in review at the Proceedings of the Royal Society B: Biological Sciences, the total number of sightings, the percentage seen inside protected forest, and the species’ detectability, as calculated by DISTANCE.
DOI: 10.5061/dryad.vk070/2
title: Flock Dataset

description: This is a data table that includes the composition of all complete flocks (80-100% of individuals detected), and is organized by transects (see transect data). Note that mammals species are included in these records as well as bird species, and species are ordered by English name.