cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7975394.v1
title: Additional file 4: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S2. Differential expression profiles of â TCA cycleâ KEGG pathway genes and transcripts in colon adenocarcinomas compared to normal tissues (TCGA data). The color scale indicates the degree of change. (XLSX 516 kb)
DOI: 10.6084/m9.figshare.7975376
title: Additional file 2: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S1. Differential expression profiles of â Glycolysis/Gluconeogenesisâ KEGG pathway genes in colon adenocarcinomas compared to normal tissues (TCGA data). The color scale indicates the degree of change. (XLSX 836 kb)
DOI: 10.6084/m9.figshare.7975376.v1
title: Additional file 2: of The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma

description: Table S1. Differential expression profiles of â Glycolysis/Gluconeogenesisâ KEGG pathway genes in colon adenocarcinomas compared to normal tissues (TCGA data). The color scale indicates the degree of change. (XLSX 836 kb)
DOI: 10.6084/m9.figshare.7975355
title: Additional file 4: of A pharmacogenetic study of patients with schizophrenia from West Siberia gets insight into dopaminergic mechanisms of antipsychotic-induced hyperprolactinemia

description: Table S4. Lewontinâ s Dâ statistics to measure pairwise linkage disequilibrium between SLC6A3 SNPs. (XLS 40 kb)
DOI: 10.6084/m9.figshare.7975355.v1
title: Additional file 4: of A pharmacogenetic study of patients with schizophrenia from West Siberia gets insight into dopaminergic mechanisms of antipsychotic-induced hyperprolactinemia

description: Table S4. Lewontinâ s Dâ statistics to measure pairwise linkage disequilibrium between SLC6A3 SNPs. (XLS 40 kb)
DOI: 10.6084/m9.figshare.12875513
title: Data: Memory Tasks from Towards a reliable measure of motor working memory: revisiting Wu and Coulson's (2014) movement span task

description: Some researchers have argued that motor working memory is relatively independent from visuospatial working memory and underlies the learning and processing of motor tasks, like gesture comprehension. To allow systematic testing of these claims, Wu & Coulson 2014 <i>Psychol. Sci.</i> <b>26</b>, 1717–1727. (doi:10.1177/0956797615597671) proposed a novel measure of motor working memory, the movement span task. Some studies have reported that the movement span task has a high degree of validity. The purpose of the present study was to attempt to replicate Wu & Coulson 2014 <i>Psychol. Sci.</i> <b>26</b>, 1717–1727. (doi:10.1177/0956797615597671) in the following ways: (1) the high correlation between movement span and movement recall scores and (2) the lack of correlation between the movement span task on the one hand and visuospatial and verbal working memory on the other. In the present study, we found a high correlation between the movement span and recall scores as well most measures of visuospatial memory. However, the size of these correlations was similar to that reported by Wu and Coulson, suggesting that the significance may be related to sample size. In other words, motor working memory may be weakly related to visuospatial memory. By contrast, there were weak correlations between the movement span task and verbal memory. In sum, we found the same pattern of results observed by Wu & Coulson 2014, 1717–1727. (doi:10.1177/0956797615597671).
DOI: 10.5284/1081258
title: An Archaeological Watching Brief at All Saints Church, Elton, Derbyshire (OASIS ID: archaeol5-343881)

description: Archaeological Research Services Ltd was commissioned by the Parochial Church Council of All Saints Church, Elton to undertake an archaeological watching brief on land at All Saints Church, Elton, Derbyshire, DE4 3BW. The works, which took place between 18th-26th February 2019 form part of the planning conditions for the construction of a disabled toilet inside the church tower and associated drainage in the churchyard. The watching brief aimed to record the nature, extent and date of any surviving archaeological remains associated with the church and church yard and past secular activities on the site. The excavation of the drainage trenches in 2019 revealed a sandstone foundation, possibly for a plinth, and part of a sandstone wall. The wall may relate to the wall discovered in 2007 (OASIS ID: archaeol5-22550), however this cannot be determined with certainty.
DOI: 10.6084/m9.figshare.12875513.v1
title: Data: Memory Tasks from Towards a reliable measure of motor working memory: revisiting Wu and Coulson's (2014) movement span task

description: Some researchers have argued that motor working memory is relatively independent from visuospatial working memory and underlies the learning and processing of motor tasks, like gesture comprehension. To allow systematic testing of these claims, Wu & Coulson 2014 <i>Psychol. Sci.</i> <b>26</b>, 1717–1727. (doi:10.1177/0956797615597671) proposed a novel measure of motor working memory, the movement span task. Some studies have reported that the movement span task has a high degree of validity. The purpose of the present study was to attempt to replicate Wu & Coulson 2014 <i>Psychol. Sci.</i> <b>26</b>, 1717–1727. (doi:10.1177/0956797615597671) in the following ways: (1) the high correlation between movement span and movement recall scores and (2) the lack of correlation between the movement span task on the one hand and visuospatial and verbal working memory on the other. In the present study, we found a high correlation between the movement span and recall scores as well most measures of visuospatial memory. However, the size of these correlations was similar to that reported by Wu and Coulson, suggesting that the significance may be related to sample size. In other words, motor working memory may be weakly related to visuospatial memory. By contrast, there were weak correlations between the movement span task and verbal memory. In sum, we found the same pattern of results observed by Wu & Coulson 2014, 1717–1727. (doi:10.1177/0956797615597671).
DOI: 10.6084/m9.figshare.12875511.v6
title: Additional file of Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins

description: Additional file of Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins
DOI: 10.6084/m9.figshare.12875526.v1
title: Additional file 5 of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

description: Additional file 5:Gene list of single clusters. Lists of genes corresponding to each of the cluster resulting from the k-means clustering (k = 10) depicted in Figure 4B (obtained by Expression Profiler analysis; http://www.ebi.ac.uk/expressionprofiler ). Each column contains a single cluster. Column names indicate cluster number and, in brackets, the total number of genes present in each cluster. (XLS 114 KB)
DOI: 10.6084/m9.figshare.12875514
title: Additional file 1 of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

description: Additional file 1:List of orthologues. List of the orthologues (2891 gene IDs) between S. cerevisiae and P. pastoris used for the direct comparison of the results of the transcriptional analysis. Orthology was determined using a reciprocal best hit strategy based on protein BLASTs (E-value cut-off &lt; 10-5 and filtering for at least one high scoring segment &gt; 50 amino acids with a similarity &gt; 40%). 388 gene IDs passing the filters were excluded since they were missing either on the S. cerevisiae or on the P. pastoris microarrays. Column A, P. pastoris gene IDs used in microarrays; column B, S. cerevisiae systematic names; column C, S. cerevisiae short gene names (corresponding to the protein names); column D, number of S. cerevisiae genes for which the P. pastoris protein was the best hit. (XLS 326 KB)
DOI: 10.6084/m9.figshare.12875514.v1
title: Additional file 1 of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

description: Additional file 1:List of orthologues. List of the orthologues (2891 gene IDs) between S. cerevisiae and P. pastoris used for the direct comparison of the results of the transcriptional analysis. Orthology was determined using a reciprocal best hit strategy based on protein BLASTs (E-value cut-off &lt; 10-5 and filtering for at least one high scoring segment &gt; 50 amino acids with a similarity &gt; 40%). 388 gene IDs passing the filters were excluded since they were missing either on the S. cerevisiae or on the P. pastoris microarrays. Column A, P. pastoris gene IDs used in microarrays; column B, S. cerevisiae systematic names; column C, S. cerevisiae short gene names (corresponding to the protein names); column D, number of S. cerevisiae genes for which the P. pastoris protein was the best hit. (XLS 326 KB)
DOI: 10.6084/m9.figshare.12875541.v1
title: Additional file of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

description: Additional file of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis
DOI: 10.6084/m9.figshare.7975259
title: MOESM2 of Optimal principal component analysis of STEM XEDS spectrum images

description: Additional file 2. Simulated STEM XEDS spectrum-image of a phantom CMOS device without adding noise.
DOI: 10.6084/m9.figshare.12875541.v5
title: Additional file of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

description: Additional file of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis
DOI: 10.6084/m9.figshare.7975259.v1
title: MOESM2 of Optimal principal component analysis of STEM XEDS spectrum images

description: Additional file 2. Simulated STEM XEDS spectrum-image of a phantom CMOS device without adding noise.
DOI: 10.6084/m9.figshare.12875526
title: Additional file 5 of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

description: Additional file 5:Gene list of single clusters. Lists of genes corresponding to each of the cluster resulting from the k-means clustering (k = 10) depicted in Figure 4B (obtained by Expression Profiler analysis; http://www.ebi.ac.uk/expressionprofiler ). Each column contains a single cluster. Column names indicate cluster number and, in brackets, the total number of genes present in each cluster. (XLS 114 KB)
DOI: 10.6084/m9.figshare.7975244
title: MOESM1 of Optimal principal component analysis of STEM XEDS spectrum images

description: Additional file 1. Simulated STEM XEDS spectrum-image of a phantom CMOS device with adding Poisson noise.
DOI: 10.6084/m9.figshare.7975247
title: Additional file 1: of Characterization of minimal lesions related to the presence of visna/maedi virus in the mammary gland and milk of dairy sheep

description: Table S1. histology, ELISA, IHC and PCR results in udder (U) and milk (M) samples. NS: no sample available. Animals highlighted in red were considered as not infected. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7975250
title: Additional file 1: of Application of big BAF sampling for estimating carbon on small woodlots

description: Table S1. Design effects for total inventory costs. DE = cost of column design / row design. DE &lt; 1 means column design is more efficient, DE &gt; 1 means row design is more efficient. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7975247.v1
title: Additional file 1: of Characterization of minimal lesions related to the presence of visna/maedi virus in the mammary gland and milk of dairy sheep

description: Table S1. histology, ELISA, IHC and PCR results in udder (U) and milk (M) samples. NS: no sample available. Animals highlighted in red were considered as not infected. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7975250.v1
title: Additional file 1: of Application of big BAF sampling for estimating carbon on small woodlots

description: Table S1. Design effects for total inventory costs. DE = cost of column design / row design. DE &lt; 1 means column design is more efficient, DE &gt; 1 means row design is more efficient. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7975244.v1
title: MOESM1 of Optimal principal component analysis of STEM XEDS spectrum images

description: Additional file 1. Simulated STEM XEDS spectrum-image of a phantom CMOS device with adding Poisson noise.
DOI: 10.6084/m9.figshare.7975232
title: Additional file 5: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Differential analysis results between subtypes A and B inNRCT at OTU level. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7975226
title: Additional file 4: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Clinical information of all the 50 samples. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7975232.v1
title: Additional file 5: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Differential analysis results between subtypes A and B inNRCT at OTU level. (XLSX 22 kb)
DOI: 10.5284/1081259
title: Level 2 Historic Building Record of Burgage Wall, Daventry, Northamptonshire (OASIS ID: adasuklt1-398493)

description: A level 2 historic building survey that took place on a wall at Mulberry Place referred to as the 'burgage wall'. The survey highlighted aspects of the wall dating back to the 19th century however has been progressively repaired since. During dismantling of the wall it was recorded that it was situated on a courses of stonework which may have been the remains of an earlier wall.
DOI: 10.6084/m9.figshare.7975226.v1
title: Additional file 4: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Clinical information of all the 50 samples. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7975217
title: Additional file 3: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Differential analysis results between AP samples (NRCT) and healthy teeth (HT), at Genus level. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7975214
title: Additional file 3: of Immune profiling of pre- and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial

description: Table S2. Gene membership of the prognostic and immunotherapy response predictive gene signatures and corresponding references. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.7975211
title: Additional file 2: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Differential analysis results between AP samples (NRCT) and healthy teeth (HT), at OTU level. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.7975217.v1
title: Additional file 3: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Differential analysis results between AP samples (NRCT) and healthy teeth (HT), at Genus level. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7975211.v1
title: Additional file 2: of Microbiota in the apical root canal system of tooth with apical periodontitis

description: Differential analysis results between AP samples (NRCT) and healthy teeth (HT), at OTU level. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.7975214.v1
title: Additional file 3: of Immune profiling of pre- and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial

description: Table S2. Gene membership of the prognostic and immunotherapy response predictive gene signatures and corresponding references. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.7975205
title: Additional file 2: of Immune profiling of pre- and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial

description: Table S1. Gene membership of the immune cell type metagenes and the immune function metagenes. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7975205.v1
title: Additional file 2: of Immune profiling of pre- and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial

description: Table S1. Gene membership of the immune cell type metagenes and the immune function metagenes. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7975061
title: Experimental and numerical modeling of horizontally-bent buried pipelines crossing fault slip

description: Abstract The behavior and response of pipelines subjected to slip fault movement is studied by numerical simulations as well as experimental setup. A finite element modeling is also developed via ABAQUS software. In this study, an artificial accelerogram is applied to the system and matched against the response spectrum according to the standard No. 2800 (Iranian code of practice for seismic resistant design of buildings, 2014). Three different pipe nominal sizes and thicknesses (1 ½”, 2” and 4”) are considered in the experiments on the shaking table. According to the results, plastic hinge as well as the extremum stress and strain is formed in the fixed soil wedge and at locations close to the fault line. Further, as the pipe D/t ratio increases, the plastic hinge forms further away from the fault line. According to the results, the pipe-soil strain ratio (εp/s) has lower values at larger pipe diameters. Also, the axial strains would be greater for the systems with higher (εp/s) ratios.
DOI: 10.6084/m9.figshare.7975061.v1
title: Experimental and numerical modeling of horizontally-bent buried pipelines crossing fault slip

description: Abstract The behavior and response of pipelines subjected to slip fault movement is studied by numerical simulations as well as experimental setup. A finite element modeling is also developed via ABAQUS software. In this study, an artificial accelerogram is applied to the system and matched against the response spectrum according to the standard No. 2800 (Iranian code of practice for seismic resistant design of buildings, 2014). Three different pipe nominal sizes and thicknesses (1 ½”, 2” and 4”) are considered in the experiments on the shaking table. According to the results, plastic hinge as well as the extremum stress and strain is formed in the fixed soil wedge and at locations close to the fault line. Further, as the pipe D/t ratio increases, the plastic hinge forms further away from the fault line. According to the results, the pipe-soil strain ratio (εp/s) has lower values at larger pipe diameters. Also, the axial strains would be greater for the systems with higher (εp/s) ratios.
DOI: 10.6084/m9.figshare.7975052
title: Identification of Extra Virgin Olive Oils Modified by the Addition of Soybean Oil, Using Ion Chromatography

description: The modification of four extra virgin olive oils from different origins with refined soybean oil (SO), in the proportions of 0, 5, 10, 20 and 30% m/m, was studied using two approaches. First, the induction period (IP) was determined by Rancimat. In the second strategy, ion chromatography was used to quantify the formic and acetic acids, in their carboxylate forms (formate and acetate), present in the water contained in the measurement vessel of the Rancimat device, 21 h after the beginning of the induced oxidation of the samples. The content of the adulterant (SO) was linearly correlated with the IP (mean correlation coefficient (R) = 0.9858) and the concentration of the formate (mean R = 0.9979) and acetate (mean R = 0.9951). Also, it was observed that as the IP decreased and the formic acid and acetic acid concentrations increased, the monounsaturated fatty acids/polyunsaturated fatty acids ratio decreased.
DOI: 10.6084/m9.figshare.7975052.v1
title: Identification of Extra Virgin Olive Oils Modified by the Addition of Soybean Oil, Using Ion Chromatography

description: The modification of four extra virgin olive oils from different origins with refined soybean oil (SO), in the proportions of 0, 5, 10, 20 and 30% m/m, was studied using two approaches. First, the induction period (IP) was determined by Rancimat. In the second strategy, ion chromatography was used to quantify the formic and acetic acids, in their carboxylate forms (formate and acetate), present in the water contained in the measurement vessel of the Rancimat device, 21 h after the beginning of the induced oxidation of the samples. The content of the adulterant (SO) was linearly correlated with the IP (mean correlation coefficient (R) = 0.9858) and the concentration of the formate (mean R = 0.9979) and acetate (mean R = 0.9951). Also, it was observed that as the IP decreased and the formic acid and acetic acid concentrations increased, the monounsaturated fatty acids/polyunsaturated fatty acids ratio decreased.
DOI: 10.6084/m9.figshare.7975040
title: Using skin temperature and muscle thickness to assess muscle response to strength training

description: ABSTRACT Introduction: Several studies already reported the response of many biomarkers after strength training, but studies using low cost diagnostic imaging tools are rare. Objective: To evaluate the usage of skin temperature and muscle thickness (MT) to monitor muscle response (until 96 hours after) to high-intensity strength training. Methods: This is a short-term longitudinal study with 13 trained, healthy male volunteers. Volunteers performed five sets of biceps bi-set exercise with their dominant arm with dumbbells, with load of 70% of one-repetition maximum (1RM). The ultrasound (US) and thermal images were acquired before and immediately after the last set, 24, 48, 72 and 96 hours after exercise. Results: The analysis was divided in two stages: acute muscle response (until 24 hours after training) and delayed muscle response (from 24 to 96 hours after training). The elbow flexors thickness showed the peak value immediately after the last set of training. Skin temperature (on elbow flexors) and the elbow flexors thickness grew continuously from 24 to 96 hours after strength training. There is a high correlation (r=0.941, p=0.017) between skin temperature and muscle thickness from the end of exercise until 96 hours after strength training. Conclusions: The US images showed high sensibility for muscle physiological changes on the first 24 hours after exercise. On the other hand, the thermal images had higher sensibility for muscle physiological changes than US images from 24 to 96 hours after training.
DOI: 10.6084/m9.figshare.7975037
title: Brain death-induced cytokine release is not associated with primary graft dysfunction: a cohort study

description: ABSTRACT Objective: To examine the association between donor plasma cytokine levels and the development of primary graft dysfunction of organs transplanted from deceased donors. Methods: Seventeen deceased donors and the respective 47 transplant recipients were prospectively included in the study. Recipients were divided into two groups: group 1, patients who developed primary graft dysfunction; and group 2, patients who did not develop primary graft dysfunction. Donor plasma levels of TNF, IL-6, IL-1β, and IFN-γ assessed by ELISA were compared between groups. Results: Sixty-nine organs were retrieved, and 48 transplants were performed. Donor plasma cytokine levels did not differ between groups (in pg/mL): TNF, group 1: 10.8 (4.3 - 30.8) versus group 2: 8.7 (4.1 - 33.1), p = 0.63; IL-6, group 1: 1617.8 (106.7 - 5361.7) versus group 2: 922.9 (161.7 - 5361.7), p = 0.56; IL-1β, group 1: 0.1 (0.1 - 126.1) versus group 2: 0.1 (0.1 - 243.6), p = 0.60; and IFN-γ, group 1: 0.03 (0.02 - 0.2) versus group 2: 0.03 (0.02 - 0.1), p = 0.93). Similar findings were obtained when kidney transplants were analyzed separately. Conclusion: In this sample of transplant recipients, deceased donor plasma cytokines TNF, IL-6, IL-1β, and IFN-γ were not associated with the development of primary graft dysfunction.