cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23528936.v1
title: takeuchiETAL_table-S8_ESM.xlsx from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528939
title: takeuchiETAL_table-S9_ESM.tsv from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528939.v1
title: takeuchiETAL_table-S9_ESM.tsv from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528945
title: takeuchiETAL_table-S4_ESM.tsv from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528945.v1
title: takeuchiETAL_table-S4_ESM.tsv from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528948
title: takeuchiETAL_table-S2_ESM.xlsx from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528948.v1
title: takeuchiETAL_table-S2_ESM.xlsx from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528954
title: takeuchiETAL_table-S6_ESM.xlsx from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.6084/m9.figshare.23528954.v1
title: takeuchiETAL_table-S6_ESM.xlsx from Prophages and plasmids can display opposite trends in the types of accessory genes they carry

description: Mobile genetic elements (MGEs), such as phages and plasmids, often possess accessory genes encoding bacterial functions, facilitating bacterial evolution. Are there rules governing the arsenal of accessory genes MGEs carry? If such rules exist, they might be reflected in the types of accessory genes different MGEs carry. To test this hypothesis, we compare prophages and plasmids with respect to the frequencies at which they carry antibiotic resistance genes (ARGs) and virulence factor genes (VFGs) in the genomes of 21 pathogenic bacterial species using public databases. Our results indicate that prophages tend to carry VFGs more frequently than ARGs in three species, whereas plasmids tend to carry ARGs more frequently than VFGs in nine species, relative to genomic backgrounds. In <i>Escherichia coli</i>, where this prophage-plasmid disparity is detected, prophage-borne VFGs encode a much narrower range of functions than do plasmid-borne VFGs, typically involved in damaging host cells or modulating host immunity. In the species where the above disparity is not detected, ARGs and VFGs are barely found in prophages and plasmids. These results indicate that MGEs can differentiate in the types of accessory genes they carry depending on their infection strategies, suggesting a rule governing horizontal gene transfer mediated by MGEs.
DOI: 10.34740/kaggle/dsv/5452013
title: (🌇Sunset)💥📰 Daily Breaking News Twitter Dataset
DOI: 10.6084/m9.figshare.23528964
title: <strong>Local surface cooling from afforestation amplified by lower aerosol pollution</strong>

description: Code used in this study.
DOI: 10.5281/zenodo.8045434
title: Earthquake catalogue dataset in and around the 1931 Mw 7.8 Fuyun earthquake.

description: Earthquake catalogue dataset for the submitted paper "Viscoelastic stress change from the 1931 Mw 7.8 Fuyun earthquake and its impacts on seismic activity around the Altai mountains".
DOI: 10.5281/zenodo.8045497
title: Challenges and Limitations in the Design and Implementation of Fair and Equitable Machine Learning Algorithms in Healthcare

description: We provide the programs in Python, a CSV file with references, images used in the article and a text corpus generated with Python.
DOI: 10.5281/zenodo.8045498
title: Challenges and Limitations in the Design and Implementation of Fair and Equitable Machine Learning Algorithms in Healthcare

description: We provide the programs in Python, a CSV file with references, images used in the article and a text corpus generated with Python.
DOI: 10.5281/zenodo.8045539
title: Challenges and Limitations in the Design and Implementation of Fair and Equitable Machine Learning Algorithms in Healthcare

description: We provide the programs in Python, a CSV file with references, images used in the article and a text corpus generated with Python.
DOI: 10.5281/zenodo.8045494
title: Dataset and Code for the Paper "Reinforced Active Learning for CVD-Grown Two-Dimensional Materials Characterization"

description: This repository contains the original data and code for the paper titled as "Reinforced Active Learning for CVD-Grown Two-Dimensional Materials Characterization" published on <em>IISE Transactions</em>.
DOI: 10.5281/zenodo.8045493
title: Dataset and Code for the Paper "Reinforced Active Learning for CVD-Grown Two-Dimensional Materials Characterization"

description: This repository contains the original data and code for the paper titled as "Reinforced Active Learning for CVD-Grown Two-Dimensional Materials Characterization" published on <em>IISE Transactions</em>.
DOI: 10.6084/m9.figshare.23244101.v1
title: Crustal remelting origin of highly silicic magmatism on the Moon

description: Orbital observations of non-mare, highly silicic volcanic constructs on the Moon challenge the conventional view of the formation of silicic crusts in the presence of water and plate tectonics—the former the Moon has in very short supply and the latter it likely never ever had. Revealing the silica-rich magma origin may reshape our understanding of early planetary crust formation. However, the cause of lunar silicic magmatism remains enigmatic. Here we conduct phase equilibrium simulations for potential lunar igneous lithologies that demonstrate that the compositions of silicic volcanic constructs can be produced by partial melting of KREEP (potassium, rare earth elements, and phosphorus) basalts. Either internal radiogenic heating or external impact bombardment can provide the heat needed for KREEP basalt melting. Combined with silica-rich materials identified on other rocky planets, we suggest that highly evolved crusts might be more prevalent in the early solar system than anticipated as they can originate from crustal remelting in the absence of water and plate tectonics.
DOI: 10.6084/m9.figshare.23529017
title: Additional file 1 of Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23529017.v1
title: Additional file 1 of Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23529020.v1
title: Additional file 2 of Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.23529026.v1
title: Additional file 3 of Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23529029.v1
title: Additional file 4 of Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)

description: Supplementary Material 4
DOI: 10.15468/dl.hogi7x
title: Occurrence Download

description: A dataset listing the 19599 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ensatina eschscholtzii Gray, 1850"
 ]
}

 The dataset's 19599 records were derived from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004593-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzsn9j
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Year 1970-2020",
 {
 "or" : [
 "TaxonKey is Pinguicula macroceras Pall. ex Link",
 "TaxonKey is Pinguicula macroceras subsp. macroceras",
 "TaxonKey is Pinguicula macroceras var. microceras (Cham.) Casper",
 "TaxonKey is Pinguicula macroceras var. macroceras",
 "TaxonKey is Pinguicula macroceras subsp. nortensis J.Steiger ex J.Steiger & Rondeau"
 ]
 }
 ]
}

 The dataset includes 44 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010376-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r72ahe
title: Occurrence Download

description: A dataset containing 4838 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Metcalfa pruinosa (Say, 1830)"
 ]
}

 The dataset includes 4838 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065409-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ddnjd
title: Occurrence Download

description: A dataset containing 2960 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Argentina",
 "Country is Uruguay"
 ]
 },
 "TaxonKey is Ananas Mill."
 ]
}

 The dataset includes 2960 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242422-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5m8z3u
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "TaxonKey is Sylvilagus brasiliensis (Linnaeus, 1758)"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010377-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11304546
title: Masterarbeit DIK CVRL 2024_part1
DOI: 10.5281/zenodo.11304547
title: Masterarbeit DIK CVRL 2024_part1
DOI: 10.15468/dl.j1kwek
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is Bird.27847588"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010377-190621201848488/datasets/export for details.
DOI: 10.15468/dl.mcgky2
title: Occurrence Download

description: A dataset containing 6041 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vitis vinifera subsp. vinifera"
 ]
}

 The dataset includes 6041 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012764-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9u5x7
title: Occurrence Download

description: A dataset containing 977 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scymnus nubilus Mulsant, 1850"
 ]
}

 The dataset includes 977 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320292-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy2uec
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana kurroo Royle"
 ]
}

 The dataset includes 49 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233819-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cq3nvv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleurospermum album C.B.Clarke",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0320968-200613084148143/datasets/export for details.
DOI: 10.15468/dl.rwunt9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micromus dissimilis (Nakahara, 1915)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209390-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.