cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7483/opendata.cms.eb57.r7yv
title: /ZToJPsiG_JPsiToMuMu_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.o3ux.fgtq
title: /ZToLLZTo2JJJ_EWK_LO_mjj100_pTj10_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v3/MINIAODSIM
DOI: 10.6084/m9.figshare.28138022
title: Additional files

description: Additional files link to the paper entitled "An expanded phylogenomic analysis of Heterolobosea reveals the deep relationships, non-canonical genetic codes, and cryptic flagellate stages in the group".
DOI: 10.7483/opendata.cms.o3bb.86fx
title: /ZToLLZTo2JJJ_EWK_LO_mjj100_pTj10_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.08lr.9d5k
title: /ZToLLZToJJJJ_EWK_LO_SM_mjj100_pTj10_aQGC_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.lswf.dfxf
title: /ZToLLZToJJJJ_EWK_LO_SM_mjj100_pTj10_aQGC_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.3wab.3knl
title: /ZToLNuZToJJJJ_ewk_qcd_mjj100_pTj10_QCD_LO_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.i0o8.pui9
title: /ZToLNuZToJJJJ_ewk_qcd_mjj100_pTj10_QCD_LO_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.wr0n.a231
title: /ZToLNuZToJJJJ_mjj100_pTj10_QCD_LO_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.g3bx.7qdi
title: /ZToLNuZToJJJJ_mjj100_pTj10_QCD_LO_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.n5e4.jzff
title: /ZToMuMu_M-120To200_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v1/MINIAODSIM
DOI: 10.7483/opendata.cms.41yb.mkjd
title: /ZToMuMu_M-120To200_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.minu.liu6
title: /ZToMuMu_M-1400To2300_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.4d7s.jae1
title: /ZToMuMu_M-1400To2300_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.ki4v.sah8
title: /ZToMuMu_M-200To400_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.8q76.3mee
title: /ZToMuMu_M-200To400_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.cw9b.m3o9
title: /ZToMuMu_M-2300To3500_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.j2pi.rgnp
title: /ZToMuMu_M-2300To3500_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.1qp7.50u9
title: /ZToMuMu_M-3500To4500_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.u1el.o5ad
title: /ZToMuMu_M-3500To4500_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.mh2s.h13u
title: /ZToMuMu_M-400To800_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.tvn9.zyo4
title: /ZToMuMu_M-400To800_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/b9v6tsg3fh.1
title: Dataset - Atlantic salmon performance at different dissolved oxygen levels

description: This dataset details the zootechnical performance of Atlantic salmon (Salmo salar) reared under experimental conditions at three dissolved oxygen levels (50%, 60%, and 95% saturation).

Generated from two in vivo trials, the dataset includes:

- Daily and hourly measurements: dissolved oxygen, water temperature, salinity, number of fish, and feed intake.
- Sampling and laboratory data: fish weight, fork length, sex, organ weight, whole-body composition, tail, and opercular beat frequency.
- Zootechnical indicators: survival rate, weight gain, and feed conversion ratio.

Data at the group level was analyzed using ANOVA with post-hoc testing. 

The dataset comprises spreadsheets (.xlsx) and charts (.png). It is valuable for use in further analysis and modeling the effects of dissolved oxygen on salmon performance.
DOI: 10.7483/opendata.cms.phqz.4mqy
title: /ZToMuMu_M-4500To6000_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.mexc.i89d
title: /ZToMuMu_M-4500To6000_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.67jw.vcc1
title: /ZToMuMu_M-50To120_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.7si8.25eu
title: /ZToMuMu_M-50To120_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.uk9u.abcl
title: /ZToMuMu_M-6000ToInf_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.msi7.i7rg
title: /ZToMuMu_M-6000ToInf_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.1d2x.29lj
title: /ZToMuMu_M-800To1400_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/gv2yg5bdrz
title: LINF_330028100

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gv2yg5bdrz.1
title: LINF_330028100

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.ile0.55e4
title: /ZToMuMu_M-800To1400_TuneCP5_13TeV-powheg-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/v32t5fy2ks.1
title: LINF_350045500

description: ubiquitin-protein ligase | HECT12
Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.lhes.8ufz
title: /ZToPsiPrimeG_PsiPrimeToMuMu_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v1/MINIAODSIM
DOI: 10.7483/opendata.cms.beya.op3e
title: /ZToPsiPrimeG_PsiPrimeToMuMu_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/2gsf3y3df5.1
title: LINF_350045400

description: mitochondrial carrier protein | MCP3
Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.x17u.04rn
title: /ZToUpsilon1SGamma_TuneCP5_13TeV-amcatnloFXFX-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.7483/opendata.cms.i08n.vvx4
title: /ZToUpsilon1SGamma_TuneCP5_13TeV-amcatnloFXFX-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.7483/opendata.cms.s0dy.7cua
title: /ZToUpsilon2SGamma_TuneCP5_13TeV-amcatnloFXFX-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/j8xbwb93x9.1
title: BRAQUE: Bayesian Reduction for Amplified Quantization in UMAP Embedding. Supplementary data.

description: We propose a Bayesian Reduction for Amplified Quantization in Umap Embedding (BRAQUE) as an integrative novel approach, from data preprocessing to phenotype classification. BRAQUE starts with an innovative preprocessing, named Lognormal Shrinkage, able to enhance input fragmentation by fitting a lognormal mixture model and shrinking each component towards its median, in order to help further clustering step in finding more separated and clear clusters. The BRAQUE’s pipeline consist of a dimensionality reduction step performed using UMAP, and a clustering performed using HDBSCAN on UMAP embedding. These SUPPLEMENTAL DATA contain the csv image data files for seven lymphoid tissues, the antibody list and an MTA agreement letter for the CyBorgh software.
DOI: 10.17632/c5k9xnyvtb.1
title: Topology-optimization based design of multi-degree-of-freedom compliant mechanisms (mechanisms with multiple pseudo-mobility)

description: A MATLAB-code for the algorithm presented in paper “Topology-optimization based design of multi-degree-of-freedom compliant mechanisms (mechanisms with multiple pseudo-mobility)” (https://doi.org/10.1177/1045389X221111535).
DOI: 10.7483/opendata.cms.ikvm.0kc3
title: /ZToUpsilon2SGamma_TuneCP5_13TeV-amcatnloFXFX-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/5bvc96tfkn.1
title: LINF_310023600

description: thiolase-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.t9rk.qnmb
title: /ZToUpsilon3SGamma_TuneCP5_13TeV-amcatnloFXFX-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/r6fsncgyh7.1
title: MONITOOL Project: dataset of metal concentrations in seawater from European estuaries and coastal sites measured by Diffusive Gradients in Thin-films (DGT) passive samplers and spot sampling.

description: This dataset presents metal concentrations in transitional and coastal waters measured in Diffusive Gradients in Thin-films (DGT) passive samplers by Inductively Coupled Plasma Mass Spectrometry (ICP-MS: Cd, Co, Cu, Fe, Mn, Ni, Pb, Zn) and in concurrently collected spot samples by ICP-MS (Al, Cd, Co, Cu, Mn, Ni, Pb, Zn) and Anodic/Cathodic Stripping Voltammetry (ASV/CSV: Cd, Ni, Pb) and obtained in the framework of the MONITOOL Project.
Data on seawater physico-chemical parameters is also provided (salinity, temperature, dissolved oxygen, pH, turbidity, total suspended solids, dissolved organic carbon, total organic carbon).
Sampling sites include the following ecoregions: Canary Islands, Iberian Coast, Bay of Biscay and English Channel, Celtic Sea North Sea and Western Mediterranean Sea (for detailed description of sampling sites see Caetano et al., Marine Pollution Bulletin 179 (2022) 113715).
ICP-MS and voltammetry analysis (Anodic Stripping Coltammetry: Cd and Pb; Cathodic Stripping Voltammetry: Ni) were carried out in filtered seawater (see Bersuder et al., MethodsX 8 (2021) 101462; Rodríguez et al., Science of the Total Environment 783 (2021) 147001; Amouroux et al., Environmental Sciences Europe (2023) 35:29).
Detailed description of the DGT technique and a user-friendly guidance can be found in Millán et al. (2021. A Good Practice Guide for the Use of DGTs. ITC. ISBN: 978-84-09-30846-0) and Gonzalez et al. (Science of the Total Environment 847 (2022) 157499). More info: https://www.monitoolproject.eu.
DOI: 10.17632/wzzdvf8nts.1
title: Topology optimization of compliant mechanisms with distributed compliance (hinge-free compliant mechanisms) by using stiffness and adaptive volume constraints instead of stress constraints

description: A MATLAB-code for the algorithm presented in paper “Topology optimization of compliant mechanisms with distributed compliance (hinge-free compliant mechanisms) by using stiffness and adaptive volume constraints instead of stress constraints” (https://doi.org/10.1016/j.mechmachtheory.2022.105133).
DOI: 10.17632/wzzdvf8nts.2
title: Topology optimization of compliant mechanisms with distributed compliance (hinge-free compliant mechanisms) by using stiffness and adaptive volume constraints instead of stress constraints

description: A MATLAB-code for the algorithm presented in paper “Topology optimization of compliant mechanisms with distributed compliance (hinge-free compliant mechanisms) by using stiffness and adaptive volume constraints instead of stress constraints” (https://doi.org/10.1016/j.mechmachtheory.2022.105133).
DOI: 10.7483/opendata.cms.4rqz.2zls
title: /ZToUpsilon3SGamma_TuneCP5_13TeV-amcatnloFXFX-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/2rync5xszf.1
title: Using virtual reality interventions to promote social and emotional learning for children and adolescents

description: These are the coding manual and data files for the systematic review and meta-analysis regarding using VR intervention to promote social and emotional learning for children and adolescents.
DOI: 10.7483/opendata.cms.9q6k.ziic
title: /ZZ2JTo2L2Nu2J_EWK_aQGC_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/cmn2jt7sgb.1
title: LINF_210012700

description: ATP-binding cassette protein subfamily E - member 1 | ABCE1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jvchrp92f2.1
title: Cl, O, and H stable isotope compositions of variably hydrated North American SCLM xenoliths

description: The sub-continental lithospheric mantle (SCLM) beneath the Colorado Plateau is enriched in volatile elements likely due to interaction with fluids or melts derived from the subducted Farallon plate. This dataset examines bulk rock chlorine (δ37Cl) and hydrogen (δD) isotope compositions, bulk water content, and oxygen (δ18O) isotope compositions of clinopyroxene mineral separates from variably hydrated SCLM xenoliths from the Navajo Volcanic Field on the central Colorado Plateau and from anhydrous SCLM xenoliths from the southern Rio Grande Rift. These stable isotope ratios suggest that the metasomatic fluid source had elevated chlorine and hydrogen isotope ratios relative to the mantle, but lower oxygen isotope ratios. The most likely source of such stable isotope signatures is subducted gabbroic altered oceanic crust in the subducted Farallon plate. This finding has implication on the retention of volatile elements in subducted oceanic crust and on Cl isotope variation in the deep mantle.
DOI: 10.7483/opendata.cms.xgqk.ziwo
title: /ZZ2JTo2L2Nu2J_EWK_aQGC_TuneCP5_13TeV-madgraph-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/95mmjfrsyh.1
title: Credal Dog-2

description: Most datasets used for classification use hard labels. Credal Dog-2 was labeled uncertainly and imprecisely by contributors during crowdsourcing campaigns. Resulting in richer labels, modeled with the theory of belief funtions, which generalizes several reasoning frameworks with uncertainty. These datasets can be used with classical models using hard labels but also with probabilistic, fuzzy or even evidential models.

Dataset:
2 classes, 200 observations, 42 features (or raw pictures)

When using the dataset please cite :
A. Hoarau, C. Thierry, A. Martin, J.-C. Dubois, Y. Le Gall, "Datasets with rich labels for machine learning", in: FUZZ-IEEE, 2023.

Credal Dog-2 dataset
├── data
│ ├── classes.csv: Classes of the dataset
│ ├── X.csv: Features of the dataset
│ ├── X_512.csv: Learge 512 features vector of the dataset
│ ├── X_pictures.csv: Raw features (Pictures themselves)
│ ├── y.csv: Rich labels
│ └── y_true.csv: True labels
└── extra
 ├── y_hard.csv: Hard labels given during a new campaign
 ├── DATA_imperfect.csv: Imperfect answers given during the campaign
 ├── ITERATION_imperfect.csv: Imperfect 2nd step answers given during the campaign
 ├── EVENT_imperfect.csv: Contributors events
 ├── ID_imperfect.csv: Contributors IDs
 └── DATA_perfect.csv: Precise answers given during a new campaign
DOI: 10.17632/jvcnngktk6.1
title: [Data S3] Microbiota dictate T cell clonal selection to augment graft-vs-host disease after stem cell transplantation

description: Data S3. 10x genomics sequencing data files for Figure 5. Matrix file "sample_filtered_feature_bc_matrix.h5" and V(D)J annotations "filtered_contig_annotations.csv" are included below. Accompanying code can be found at https://github.com/acyeh-lab/2023/tree/main/scseq.
DOI: 10.7483/opendata.cms.4uto.rt4f
title: /ZZGTo4L_TuneCP5_4f_NLO_13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/7jdpxxmd5r.1
title: Quantitative IC-DV diagnostics

description: This MATLAB app is for quantitative diagnostics of degradation in lithium batteries. From the initial discharge curve and post-aged discharge curve, it calculates 1) loss of lithium inventory (LLI), 2) loss of active materials (LAM) in anode during lithiation, 3) LAM in anode during delithiation, 4) LAM in cathode during lithiation and 5) LAM in cathode during delithiation. To use the app, first run the peak locator app to identify peak positions and then input the peak positions in the IC-DV app. 
Contact Us
For code inquiry:  jingyi.chen12@imperial.ac.uk
Corresponding author for the journal article and Principle Investigator of the project: billy.wu@imperial.ac.uk
DOI: 10.17632/7jdpxxmd5r.2
title: Quantitative IC-DV diagnostics

description: This MATLAB app is for quantitative diagnostics of degradation in lithium batteries. From the initial discharge curve and post-aged discharge curve, it calculates 1) loss of lithium inventory (LLI), 2) loss of active materials (LAM) in anode during lithiation, 3) LAM in anode during delithiation, 4) LAM in cathode during lithiation and 5) LAM in cathode during delithiation. To use the app, first run the peak locator app to identify peak positions and then input the peak positions in the IC-DV app. 
Our journal article manuscript can be downloaded here: http://hdl.handle.net/10044/1/92598

Contact Us
For code inquiry:  jingyi.chen12@imperial.ac.uk; jingyi.chen@breathe.technology
Corresponding author for the journal article and Principle Investigator of the project: billy.wu@imperial.ac.uk
DOI: 10.17632/7jdpxxmd5r.3
title: Quantitative Incremental Capacity - Differential Voltage (IC-DV) diagnostics

description: This MATLAB app is for quantitative diagnostics of degradation in lithium batteries based on Incremental Capacity Analysis (ICA) and Differential Voltage Analysis (DVA). From the initial discharge curve and post-aged discharge curve, it calculates 1) loss of lithium inventory (LLI), 2) loss of active materials (LAM) in anode during lithiation, 3) LAM in anode during delithiation, 4) LAM in cathode during lithiation and 5) LAM in cathode during delithiation. To use the app, first run the peak locator app to identify peak positions and then input the peak positions in the IC-DV app. 
Our journal article manuscript can be downloaded here: http://hdl.handle.net/10044/1/92598

Contact Us
For code inquiry: jingyi.chen12@imperial.ac.uk; jingyi.chen@breathe.technology
Corresponding author for the journal article and Principle Investigator of the project: billy.wu@imperial.ac.uk
DOI: 10.7483/opendata.cms.ycud.u8u2
title: /ZZGTo4L_TuneCP5_4f_NLO_13TeV-amcatnlo-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v2/NANOAODSIM
DOI: 10.17632/sm5bzy6pmw.1
title: LDHU3_17.1440

description: Acyltransferase | LPLAT1; Leishmania donovani (HU3 strain)
DOI: 10.7483/opendata.cms.oj78.57av
title: /bbHToBB_M-125_4FS_yt2_TuneCP5-13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v1/MINIAODSIM
DOI: 10.17632/tjn4x7xrz8.1
title: LINF_350048600

description: centriole cartwheel protein | SAS-6
Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.ghqa.6v9q
title: /bbHToBB_M-125_4FS_yt2_TuneCP5-13TeV-amcatnlo-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/h83db3gbx2.1
title: LINF_350048400

description: FYVE zinc finger containing protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rw8prsvtsd.1
title: QuantiGene Plex assay

description: Preliminary data for the selection of housekeeping genes suitable for our cells to be used as normaliser for the full experiment that will allow us to identify genes potentially modified by the infection with ZIKV and counteracted with the heparin treatment. 
Instead of performing RNAseq analyses, we decided to opt for QuantiGene Plex (Thermofisher). This test incorporate branched DNA technology for accurate gene expression profiling. Branched DNA assays allow direct measurement of RNA transcripts using signal amplification (Luminex 200 technology) rather than target amplification. 
We decided to include 4 conditions: uninfected, uninfected + heparin, ZIKV and ZIKV + heparin, and three time points: 4, 24, 48 h post infection, for a total of 12 samples. We performed three 1:4 serial dilutions of all samples. Then, we load the plate with all undiluted samples + all dilutions made. We performed the experiment according to the manufacturer’s instructions (Thermofisher). Thanks to the Thermofisher free online software, we performed the analyses of the data we obtained from the Luminex reading. 
From the analyses file, we highlighted the data that were saturated (over 20000 reads), then we remove data from "uninfected + heparin 4h" and "ZIKV 4h" since the preparation was not perfect and the data were not reliable (incorrect serial dilution). We selected the samples in which genes are not saturated (dilution 1:64), and we performed the geometric mean (GEOMEAN) of all genes expressed by the same sample. We divided each values by its GEOMEAN and we calculated the standard deviation (SD). We selected the genes with the lower SD.
This experiment allowed us to identify the best 4 housekeeping genes: the glyceraldehyde-3-phosphate dehydrogenase (GAPDH), phosphoglycerate kinase 1 (PGK1), ubiquitin C (UBC) and the ATPase H+ transporting the A subunit V1 (ATP6V1A) .
DOI: 10.7483/opendata.cms.pfv7.7vph
title: /bbHToEEG_M120_TuneCP5_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v3/MINIAODSIM
DOI: 10.7483/opendata.cms.fhfg.9kj7
title: /bbHToEEG_M120_TuneCP5_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/ykjphtwbyc.1
title: LINF_350050100

description: mitochondrial phosphate transporter | MCP11
Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.6it9.8cv5
title: /bbHToEEG_M120_TuneCP5Down_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/kn5556pbh3
title: LDHU3_08.1290

description: von Willebrand factor type A domain containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/kn5556pbh3.1
title: LDHU3_08.1290

description: von Willebrand factor type A domain containing protein; Leishmania donovani (HU3 strain)
DOI: 10.7483/opendata.cms.p5lu.bbxm
title: /bbHToEEG_M120_TuneCP5Down_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/h8h638zhs6.1
title: LINF_350050000

description: mitochondrial phosphate transporter | MCP11
Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.e9qg.ak65
title: /bbHToEEG_M120_TuneCP5Up_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/78wsb947pp.1
title: LINF_340011600

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.k7ty.1m8b
title: /bbHToEEG_M120_TuneCP5Up_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/mr3fkmxg6x.1
title: LINF_060010900

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.7483/opendata.cms.v80m.33di
title: /bbHToEEG_M125_TuneCP5_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v1/MINIAODSIM
DOI: 10.7483/opendata.cms.snu8.hvty
title: /bbHToEEG_M125_TuneCP5_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16NanoAODv9-106X_mcRun2_asymptotic_v17-v1/NANOAODSIM
DOI: 10.17632/twptnp56c6.1
title: LDHU3_02.0090

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.7483/opendata.cms.g2sc.igje
title: /bbHToEEG_M125_TuneCP5Down_Dalitz_13TeV-amcatnlo-pythia8/RunIISummer20UL16MiniAODv2-106X_mcRun2_asymptotic_v17-v2/MINIAODSIM
DOI: 10.17632/dzsg2yp4mw.2
title: Vanheukelom2022_XRD-pattern

description: The XRD patterns of the bulk clay samples with added ZnO (10wt%) and oriented slides of the isolated &lt;2μm fraction in Ca-saturated state and ethylene glycol state.