cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11888355
title: Additional file 2 of Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers

description: Additional file 2 L. monocytogenes strains used in the project with corresponding genotypes, sequencing information and sample type.
DOI: 10.6084/m9.figshare.11888349.v1
title: Additional file 7 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 7: Table S1. Number of passed filter reads for YRI samples.
DOI: 10.6084/m9.figshare.11888355.v1
title: Additional file 2 of Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers

description: Additional file 2 L. monocytogenes strains used in the project with corresponding genotypes, sequencing information and sample type.
DOI: 10.6084/m9.figshare.11888325
title: Additional file 2 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 2. List of pMEIs in the three somatic samples. The file is provided in the Variant Call Format (VCF, https://samtools.github.io/hts-specs/VCFv4.2.pdf).
DOI: 10.6084/m9.figshare.11888319
title: Additional file 1 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 1. List of pMEIs in the 36 YRI samples. The file is provided in the Variant Call Format (VCF, https://samtools.github.io/hts-specs/VCFv4.2.pdf).
DOI: 10.6084/m9.figshare.11888325.v1
title: Additional file 2 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 2. List of pMEIs in the three somatic samples. The file is provided in the Variant Call Format (VCF, https://samtools.github.io/hts-specs/VCFv4.2.pdf).
DOI: 10.6084/m9.figshare.11888319.v1
title: Additional file 1 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 1. List of pMEIs in the 36 YRI samples. The file is provided in the Variant Call Format (VCF, https://samtools.github.io/hts-specs/VCFv4.2.pdf).
DOI: 10.6084/m9.figshare.11888313
title: Additional file 13 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 13: Table S7. SVA somatic insertion candidates.
DOI: 10.6084/m9.figshare.11888313.v1
title: Additional file 13 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 13: Table S7. SVA somatic insertion candidates.
DOI: 10.6084/m9.figshare.11888304
title: Additional file 12 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 12: Table S6. Number of passed filter reads for somatic samples.
DOI: 10.6084/m9.figshare.11888295
title: Additional file 11 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 11: Table S5. pMEIs overlapping CDS regions in YRI families.
DOI: 10.6084/m9.figshare.11888295.v1
title: Additional file 11 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 11: Table S5. pMEIs overlapping CDS regions in YRI families.
DOI: 10.6084/m9.figshare.11888286
title: Additional file 10 of Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions

description: Additional file 10: Table S4. Inheritance rates for pMEIs in YRI families.
DOI: 10.6084/m9.figshare.11888265
title: Additional file 2 of Whole-genome sequencing to explore nosocomial transmission and virulence in neonatal methicillin-susceptible Staphylococcus aureus bacteremia

description: Additional file 2: Table S2 S. aureus virulence genes
DOI: 10.6084/m9.figshare.11888265.v1
title: Additional file 2 of Whole-genome sequencing to explore nosocomial transmission and virulence in neonatal methicillin-susceptible Staphylococcus aureus bacteremia

description: Additional file 2: Table S2 S. aureus virulence genes
DOI: 10.6084/m9.figshare.11888259
title: Additional file 1 of Whole-genome sequencing to explore nosocomial transmission and virulence in neonatal methicillin-susceptible Staphylococcus aureus bacteremia

description: Additional file 1: Table S1 Whole-genome Single-Nucleotide Polymorphism analysis
DOI: 10.6084/m9.figshare.11888256
title: Additional file 3 of neoANT-HILL: an integrated tool for identification of potential neoantigens

description: Additional file 3.
DOI: 10.6084/m9.figshare.11888259.v1
title: Additional file 1 of Whole-genome sequencing to explore nosocomial transmission and virulence in neonatal methicillin-susceptible Staphylococcus aureus bacteremia

description: Additional file 1: Table S1 Whole-genome Single-Nucleotide Polymorphism analysis
DOI: 10.6084/m9.figshare.11888247
title: Additional file 2 of neoANT-HILL: an integrated tool for identification of potential neoantigens

description: Additional file 2.
DOI: 10.6084/m9.figshare.11888256.v1
title: Additional file 3 of neoANT-HILL: an integrated tool for identification of potential neoantigens

description: Additional file 3.
DOI: 10.6084/m9.figshare.11888244
title: Additional file 1 of neoANT-HILL: an integrated tool for identification of potential neoantigens

description: Additional file 1.
DOI: 10.6084/m9.figshare.11888247.v1
title: Additional file 2 of neoANT-HILL: an integrated tool for identification of potential neoantigens

description: Additional file 2.
DOI: 10.6084/m9.figshare.11888244.v1
title: Additional file 1 of neoANT-HILL: an integrated tool for identification of potential neoantigens

description: Additional file 1.
DOI: 10.6084/m9.figshare.11888199
title: Cuyama micronet

description: A total of 62 Hobo micro-station data logger weather stations were deployed in Cuyama Valley, California drylands on public lands. Each station had 4 channels with two EC5 soil moisture smart sensors and two 12-Bit temperature smart sensors. The sensor arrays were deployed for two years or a total of 24 months. Key ecological variables included microsite, location, vegetation type, and extent of vegetation at each microsite. Temperature sensors were deployed 15 cm above the soil surface under the shrub canopy of Ephedra californica (sheltered from direct sunlight) or at adjacent, open paired-microsites within 1.5m of a focal shrub.Temperatures listed are in degrees Celsius. Soil moisture sensors were inserted into the soil near each temperature probe. The x,y,z columns are the width, perpendicular measure, and height in m respectively of each shrub at those microsites.
DOI: 10.6084/m9.figshare.11888178
title: High laboratory mouse pre-weaning mortality associated with litter overlap, advanced dam age, small and large litters

description: The excel file contains mouse (C57BL/6) breeding data for 219975 pups, provided by breeding facilities of two research institutes in the UK. Each data line has information on the pup fate (whether it survived or not until weaning), litter identification, age of parents, litter size, litter mortality, number of older litters in the cage along with the number and age of older siblings. These data were used to investigate potential social and environmental factors affecting mouse pre-weaning mortality. Results showed that high pre-weaning mortality in C57BL/6 mice is associated with advanced dam age, litter overlap (i.e. presence of an older litter in the cage when new focus pups are born), presence of high number and age of older pups in the cage, and small (less than 4 pups) or large (more than 11 pups) litter. Along with these data, you can also find a graphical abstract and a file with the Excel headings´descriptions.
DOI: 10.17608/k6.auckland.11888184
title: Antimicrobial activity of the endophytic fungus Neofusicoccum australe

description: To perform zone of inhibition (ZOI) testing, potato dextrose agar (PDA) plates were inoculated with a lawn of either antibiotic-sensitive <i>Escherichia coli</i> (ATCC 25922) or resistant clinical isolates (CTX-M-9, CTX-M-14, CTX-M-15, NDM-1) or antibiotic-resistant <i>Klebsiella pneumoniae </i>(ATCC 700603). Similarly, Mueller-Hinton agar plates were inoculated with a lawn of either antibiotic-sensitive <i>Staphylococcus aureus</i> (ATCC 29213) or antibiotic-resistant <i>S. aureus</i> (ATCC 33593). <i>Neofusicoccum australe</i> was grown on PDA plates and fungal plugs removed using a 6 mm punch biopsy tool (Catalogue number: SH241, Amtech Medical, New Zealand). Fungal plugs were placed onto the bacterial lawns, alongside PDA plugs containing no fungus. Plates were incubated inverted at 37°C for 24 h before measuring any zones of inhibition (in mm) produced.
DOI: 10.6084/m9.figshare.11888199.v1
title: Cuyama micronet

description: A total of 62 Hobo micro-station data logger weather stations were deployed in Cuyama Valley, California drylands on public lands. Each station had 4 channels with two EC5 soil moisture smart sensors and two 12-Bit temperature smart sensors. The sensor arrays were deployed for two years or a total of 24 months. Key ecological variables included microsite, location, vegetation type, and extent of vegetation at each microsite.
DOI: 10.17608/k6.auckland.11888184.v1
title: Antimicrobial activity of the endophytic fungus Neofusicoccum australe

description: To perform zone of inhibition (ZOI) testing, potato dextrose agar (PDA) plates were inoculated with a lawn of either antibiotic-sensitive <i>Escherichia coli</i> (ATCC 25922) or resistant clinical isolates (CTX-M-9, CTX-M-14, CTX-M-15, NDM-1) or antibiotic-resistant <i>Klebsiella pneumoniae </i>(ATCC 700603). Similarly, Mueller-Hinton agar plates were inoculated with a lawn of either antibiotic-sensitive <i>Staphylococcus aureus</i> (ATCC 29213) or antibiotic-resistant <i>S. aureus</i> (ATCC 33593). <i>Neofusicoccum australe</i> was grown on PDA plates and fungal plugs removed using a 6 mm punch biopsy tool (Catalogue number: SH241, Amtech Medical, New Zealand). Fungal plugs were placed onto the bacterial lawns, alongside PDA plugs containing no fungus. Plates were incubated inverted at 37°C for 24 h before measuring any zones of inhibition (in mm) produced.
DOI: 10.6084/m9.figshare.11888067
title: data.xlsx

description: residential electricity demand data
DOI: 10.6084/m9.figshare.11888115
title: A database of battery materials auto-generated using ChemDataExtractor

description: Battery materials database comprising chemical and property data whereby there are up to five properties per chemical: capacity, conductivity, voltage, energy Coulombic efficiency.<br>The data are given in the .zip file.<br>The data extraction code used to generate them are given in the batterydatabaseextractioncode .zip file.<br>The Battery Database GUI Installer is given as an executable.
DOI: 10.6084/m9.figshare.11888067.v1
title: data.xlsx

description: residential electricity demand data
DOI: 10.6084/m9.figshare.11888157.v1
title: Bacterial AntiSMASH annotated contigs, raw data

description: Bacterial antiSMASH results of contig annotations <br>
DOI: 10.6084/m9.figshare.11888115.v1
title: A database of battery materials auto-generated using ChemDataExtractor

description: Battery materials database comprising chemical and property data whereby there are up to five properties per chemical: capacity, conductivity, voltage, energy Coulombic efficiency.<br>The data are given in the .zip file.<br>The data extraction code used to generate them are given in the batterydatabaseextractioncode .zip file.<br>The Battery Database GUI Installer is given as an executable.
DOI: 10.6084/m9.figshare.11888157.v3
title: DataInBrief: bacterial AntiSMASH annotated contigs, raw data

description: Bacterial antiSMASH results of contig annotations <br>
DOI: 10.6084/m9.figshare.11888157.v4
title: 9. DataInBrief: bacterial AntiSMASH annotated contigs, raw data

description: Bacterial antiSMASH results of contig annotations <br>
DOI: 10.6084/m9.figshare.11887968
title: Supplementary data.pdf

description: Supplementary data
DOI: 10.6084/m9.figshare.11888157.v5
title: 10. DataInBrief: bacterial AntiSMASH annotated contigs, raw data

description: Bacterial antiSMASH results of contig annotations <br>
DOI: 10.6084/m9.figshare.11887956
title: KReach Artifact - TACAS 2020

description: Reproducible outcomes from the 2020 TACAS paper KReach: A Tool for Reachability in Petri Nets by Alex Dixon & Ranko Lazic.
DOI: 10.6084/m9.figshare.11887965
title: data

description: The data was derived from Aster GDEM database.
DOI: 10.6084/m9.figshare.11887956.v1
title: KReach Artifact - TACAS 2020

description: Reproducible outcomes from the 2020 TACAS paper KReach: A Tool for Reachability in Petri Nets by Alex Dixon & Ranko Lazic.
DOI: 10.6084/m9.figshare.11887968.v2
title: Supplementary data.pdf

description: Supplementary data
DOI: 10.6084/m9.figshare.11887965.v2
title: data

description: The data was derived from Aster GDEM database.
DOI: 10.6084/m9.figshare.11887968.v1
title: Supplementary data.pdf

description: Supplementary data
DOI: 10.6084/m9.figshare.11887965.v1
title: data

description: The data was derived from Aster GDEM database.
DOI: 10.6084/m9.figshare.11887548
title: melanoma metastasis code

description: code
DOI: 10.6084/m9.figshare.11887548.v1
title: melanoma metastasis code

description: code
DOI: 10.6084/m9.figshare.11887476
title: Additional file 2 of Clinical and laboratory features associated with serum phosphate concentrations in malaria and other febrile illnesses

description: Additional file 2. Dataset containing all analysed data from all study subjects.
DOI: 10.6084/m9.figshare.11887476.v1
title: Additional file 2 of Clinical and laboratory features associated with serum phosphate concentrations in malaria and other febrile illnesses

description: Additional file 2. Dataset containing all analysed data from all study subjects.
DOI: 10.6084/m9.figshare.11887275
title: Additional file 1 of Comparative analysis of ChIP-exo peak-callers: impact of data quality, read duplication and binding subtypes

description: Additional file 1: Figure S1. FOXA1 (JASPAR MA0148.3) and STAT3 (JASPAR MA0144.2) occupancy in IMR90, U2OS, and GBS (JASPAR MA0113.2) in K562 datasets before and after deduplication, as reported by FIMO. Table S1. Total number of peaks/binding events reported by the tools in IMR90, K562 and U2OS datasets. Table S2. Total number of binding events discovered by each peak caller for IMR90, K562, U2OS, after filtering out the PCR duplicates. Table S3. Total GBS motif occupancy (GBS motif hits (p-value &lt;1e-4) reported by FIMO). Table S4. Peak length statistics for GEM, Genetrack, MACE, MACS, and Peakzilla when run on GR ChIP-exo datasets for IMR90, K562 and U2OS cell types.
DOI: 10.6084/m9.figshare.11887275.v1
title: Additional file 1 of Comparative analysis of ChIP-exo peak-callers: impact of data quality, read duplication and binding subtypes

description: Additional file 1: Figure S1. FOXA1 (JASPAR MA0148.3) and STAT3 (JASPAR MA0144.2) occupancy in IMR90, U2OS, and GBS (JASPAR MA0113.2) in K562 datasets before and after deduplication, as reported by FIMO. Table S1. Total number of peaks/binding events reported by the tools in IMR90, K562 and U2OS datasets. Table S2. Total number of binding events discovered by each peak caller for IMR90, K562, U2OS, after filtering out the PCR duplicates. Table S3. Total GBS motif occupancy (GBS motif hits (p-value &lt;1e-4) reported by FIMO). Table S4. Peak length statistics for GEM, Genetrack, MACE, MACS, and Peakzilla when run on GR ChIP-exo datasets for IMR90, K562 and U2OS cell types.
DOI: 10.6084/m9.figshare.11887266
title: Additional file 1 of Surgical site infection and pathogens in Ethiopia: a systematic review and meta-analysis

description: Additional file 1. Research checklist. Characteristics of included studies in the meta-analysis of bacterial pathogens.
DOI: 10.6084/m9.figshare.11887266.v1
title: Additional file 1 of Surgical site infection and pathogens in Ethiopia: a systematic review and meta-analysis

description: Additional file 1. Research checklist. Characteristics of included studies in the meta-analysis of bacterial pathogens.
DOI: 10.6084/m9.figshare.11887254
title: Additional file 6 of Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes

description: Additional file 6. COR â€“ List of all correlated mRNA-microRNA pairs differentially expressed between BL1 and BL2 subtypes.
DOI: 10.6084/m9.figshare.11887254.v1
title: Additional file 6 of Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes

description: Additional file 6. COR â€“ List of all correlated mRNA-microRNA pairs differentially expressed between BL1 and BL2 subtypes.
DOI: 10.6084/m9.figshare.11887248
title: Additional file 5 of Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes

description: Additional file 5. FA microRNAs â€“ Detailed results of functional analysis of differentially expressed microRNAs between BL1 and BL2 subtypes.
DOI: 10.6084/m9.figshare.11887239
title: Additional file 4 of Integrative analysis of breast cancer profiles in TCGA by TNBC subgrouping reveals novel microRNA-specific clusters, including miR-17-92a, distinguishing basal-like 1 and basal-like 2 TNBC subtypes

description: Additional file 4. DE microRNAs - List of all differentially expressed microRNAs between BL1 and BL2 subtypes.
DOI: 10.5281/zenodo.6933918
title: The Breakthrough Listen Search for Intelligent Life: Observations of 1327 Nearby Stars Over 1.10–3.45GHz

description: This dataset is in support of publication:<br> <em>"The Breakthrough Listen Search for Intelligent Life: Observations of 1327 Nearby Stars Over 1.10–3.45GHz", </em><br> D. C. Price, J. E. Enriquez et. al.<br> The Astronomical Journal, 159:86 (16pp), 2020<br> https://doi.org/10.3847/1538-3881/ab65f1 This dataset (<em>sband2019.tar.gz</em>) consists of '.dat' file outputs from the turboSETI narrowband dedoppler search code. The corresponding Filterbank files used as inputs (i.e. narrowband dynamic spectra) are available at http://seti.berkeley.edu/opendata. Further information about Breakthrough Listen data formats may be found in Lebofsky et. al. (2019). The file <em>static.tar.gz</em> contains the database of events (HDF5 files) and pregenerated images from the event_viewer used to manually inspect candidates.
DOI: 10.6084/m9.figshare.21991940
title: Coexistence effects on behavioral and reproductive characteristics of invaders dung beetles

description: Some invasive dung beetles have a high biological plasticity, so they modify some characteristics of life story to persist in the ecosystems. We evaluated the coexistence effects on <em>Euoniticellus intermedius</em> and <em>Digitonthophagus gazella </em>under natural and laboratory conditions. The response variables that we measure were: number and weight of brood balls in the field, the number of emerged beetles, pronotum width of females emerged and the horn size of emerged beetles on laboratory.
DOI: 10.6084/m9.figshare.21991940.v1
title: Coexistence effects on behavioral and reproductive characteristics of invaders dung beetles

description: Some invasive dung beetles have a high biological plasticity, so they modify some characteristics of life story to persist in the ecosystems. We evaluated the coexistence effects on <em>Euoniticellus intermedius</em> and <em>Digitonthophagus gazella </em>under natural and laboratory conditions. The response variables that we measure were: number and weight of brood balls in the field, the number of emerged beetles, pronotum width of females emerged and the horn size of emerged beetles on laboratory.
DOI: 10.35078/my3ufj
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Teófilo Otoni | Município: Coroaci

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7548664
title: FoldSeek database of Pfam Seeds

description: The FoldSeek database of Pfam seeds has been created by chopping the full-length structure of proteins used as Pfam Seeds.
DOI: 10.5281/zenodo.7548663
title: FoldSeek database of Pfam Seeds

description: The FoldSeek database of Pfam seeds has been created by chopping the full-length structure of proteins used as Pfam Seeds.
DOI: 10.6084/m9.figshare.21998168
title: Supplementary Material for: Perseverative Cognition and Psychotic-Like Experiences in Young Adults: A Cross-Lagged Panel Model

description: Psychotic-like experiences (PLEs), including persecutory ideation, bizarre experiences, and perceptual abnormalities, are considered risk factors for psychotic disorders and mental distress in the general population. The cognitive-affective mechanisms associated with PLEs remain under-investigated. We aimed to longitudinally assess the reciprocal associations between perseverative cognition (PC), an emerging transdiagnostic factor of psychopathology, and PLEs facets in young adults. Participants (<i>n</i> = 160) from the general population completed measures of PC and PLEs at baseline and at 2-month follow-up. A two-wave, three-variable, cross-lagged panel model was implemented controlling for well-established correlates of PC and PLEs such as depression, anxiety, and symptoms of sleep disturbance. Both PLEs and PC exhibited substantive rank-order stability (β ranged from 0.359 to 0.657, <i>ps</i> &lt; 0.001). Cross-lagged effects revealed that baseline PC was associated with bizarre experiences at 2-month follow-up (β = 0.317; <i>p</i> &lt; 0.01). This effect overcame the well-established cut-off for practical significance. In contrast, no baseline PLEs were associated with PC at follow-up. Findings suggest the presence of a monodirectional, rather than bidirectional, association between PC and bizarre experiences in young adulthood. Results should be interpreted in light of the relatively small, non-clinical, and convenient sample.