cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gy24tn26pb.2
title: Data for "Addressing the Nonlinear Effects in the Albedo Feedback Using the Neural Network Method"

description: This dataset contains a neural network model for the shortwave radiation prediction, scripts to generate data for the radiative feedback quantification in the Arctic, RTM simulated radiative feedbacks, and results from the kernel method. I. File list ------------ Figures/ scripts to generate plots era5_grid1_data/ Sept. 1992 and Sept. 2012 ERA5 data NN/nn_tsr.mat NN model for TSR flux prediction NN/nn_ssr.mat NN model for SSR flux prediction NN/nn_toa.m function for the TSR prediction NN/nn_sfc.m function for the SSR prediction NN/calculate_toa_feedbacks.m radiative feedback quantification at the TOA NN/calculate_sfc_feedbacks.m radiative feedback quantification at the surface NN/train_nn_toa.m script to train nn model for TSR flux prediction Note: the folder NN contains scripts for the shortwave radiative feedback quantification in the Arctic: 1. calculate_toa_feedbacks.m 2. calculate_sfc_feedbacks.m The results generated by these scripts are presented in Figure 6 and Figure S7. II. NN design ------------- NN model for the top net solar radiation (TSR) prediction. Input variables are: 1. TOA incident solar radiation (W*m**-2), downward positive 2. Total column cloud ice water (kg*m**-2) 3. Total column cloud liquid water (kg*m**-2) 4. Total column water vapour (kg*m**-2) 5. High cloud cover (0-1) 6. Medium cloud cover (0-1) 7. Low cloud cover (0-1) 8. Surface pressure (Pa) 9. Total column ozone (kg*m**-2) 10. Forecast albedo (0-1) Output: TSR (W*m**-2), downward positive All variables are monthly averaged values. Radiation variable is for all-sky conditions.
DOI: 10.6084/m9.figshare.15132696
title: Data and Tables of Translation Strategies and Translation Accuracy in the "Paterson" Movie

description: A repository data for an undergraduate thesis entitled <i>English-Indonesian Translation Strategies Used in "Paterson" Movie</i>. <br><br>If you use the data and tables, please cite this work as follows:<br>Widyaningsih, Putri; Ediwan, I Nyoman Tri; Rahayuni, Ni Ketut Sri (2021): Data and Tables of Translation Strategies and Translation Accuracy in the "Paterson" Movie. figshare. Dataset. https://doi.org/10.6084/m9.figshare.15132696.v1 <br>First supervisor: I Nyoman Tri Ediwan, S.S., M.Hum.<br>Second supervisor: Ni Ketut Sri Rahayuni, S.S., M.Hum.
DOI: 10.17632/rb5vjfyknf.1
title: Gauze detection and segmentation in minimally invasive surgery video using Convolutional Neural Networks

description: Results obtained in coarse-segmentation, yolo detection and U-Net segmentation on 30 random frames
DOI: 10.17632/twgn39h98x.1
title: LINF_160021700

description: mt-SAF7 | KRIPP10 Leishmania infantum (strain JPCM5)
DOI: 10.17632/4td3693352.1
title: LINF_160021500

description: DNA polymerase I alpha catalytic subunit Leishmania infantum (strain JPCM5)
DOI: 10.17632/25psmhhdrh.1
title: LINF_160021400

description: endoplasmic reticulum oxidoreductin Leishmania infantum (strain JPCM5)
DOI: 10.17632/nzfmmfkvkb.1
title: LINF_160021200

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/vrtn9r3tck.1
title: LINF_160021100

description: protein of unknown function Leishmania infantum (strain JPCM5)
DOI: 10.17632/3mbcnd26b6.1
title: Thermodynamic and kinetic factors during smectite evolution: A study based on experiments and thermodynamic calculations

description: Original data of XRD, FTIR, STEM, thermodynamic data, and solution chemistry of synthetic saponites.
DOI: 10.17632/8cd34fckgt.1
title: Machine learning-assisted single-cell Raman fingerprinting for in situ and nondestructive classification of prokaryotes. Kanno et al.

description: In the natural environments, there are various phylogenetic groups of Bacteria and Archaea including unknown microorganisms. Non-destructive, single-cell level species discrimination will contribute to single-cell genomics, ecophysiological analysis at the single-cell level, and isolation. Using single-cell Raman spectra of six microorganisms (three bacteria and three archaea) and machine learning, we tested whether it is possible to identify microbial species at the single-cell level, and succeeded in classifying them with high accuracy. The datasets are raw single-cell Raman spectra acquired from microbial cells suspended in phosphate buffer solution (PBS). Contents: 1) Single-cell Raman spectra of 6 prokaryotic species Escherichia coli JCM 20135 Bacillus subtilis JCM 1465T Thermus thermophilus JCM 10941T Thermococcus kodakarensisJCM 12380T Sulfolobus acidocaldarius JCM 8929T Nitrososphaera viennensis JCM 19564T 2) Raman spectra of PBS (10 times/file) 3) Neon standard The numerical part of the file name is related to the numerical part of the folder name that contains the Raman spectra of the microorganisms. # Column 1 in the file is only a reference for the Raman shift. Do not use it. # Please follow the method described in the paper to remove cosmic rays, subtract PBS spectrum, use neon standards to integrate data from different days, make baseline corrections, and normalize the data.
DOI: 10.17632/zhthnd824r.2
title: Discerning of anti microbial peptides (AMPs) from whole genome sequenced nut crops

description: This dataset contains BLAST as well as MACREL predicted AMPs (identified from whole genome sequenced nut crops namely, almond, Chinese chestnut, pecan nut, pistachio nut, walnut) with e-value of &lt;1 and identity percentage ≥ 50. Besides, the data on categorization of the predicted AMPs from the selected whole genome sequenced nut crops based on the key physicochemical properties and the general AMP database (retrieved from DRAMP database) used for blasting against crop protein and MACREL output file were also provided.
DOI: 10.17632/bbv4g5hjfc.1
title: LINF_200021000

description: 40S ribosomal protein S11 | uS17 Leishmania infantum (strain JPCM5)
DOI: 10.17632/p57vf9vzr4.1
title: LINF_210024100

description: 40S ribosomal protein S11 | uS17 Leishmania infantum (strain JPCM5)
DOI: 10.17632/p6gdn5bg57.2
title: Discerning of Antimicrobial peptides (AMPs) from whole genome sequenced tropical and subtropical fruit crops

description: Recent outbreaks of infectious diseases caused by multidrug-resistant organisms have served as a stark reminder of the urgent need for novel antimicrobial medicines to protect public health. Anti-microbial peptides (AMPs) have attracted a lot of interest over the last thirty years because of their unique membrane-active antimicrobial mechanism and broad-spectrum activity. These AMPs have a wide range of applications in different fields. It is considered as cationic host defence peptides, anionic antimicrobial peptides/proteins, cationic amphipathic peptides, host defence peptides and alpha-helical antimicrobial peptides. They can protect against a variety of infection-causing organisms, such as bacteria, fungi, parasites, viruses, and tumour cells, and they also have immunomodulatory effects. In the present research, the whole genome sequenced tropical and subtropical fruit crops such as mango, jack, carambola, ber and date palm were selected for the identification of anti-microbial peptides. The whole-genome sequence (WGS) was annotated with the DRAMP database for the retrieval of active anti-microbial peptides. The potential anti-microbial peptides were retrieved in two ways through BLAST and Macrel prediction. Predicted AMPs through both the tools were taken into physicochemical property calculation such as net charge, length of sequence /peptide, hydrophobicity, iso-electric point and amphiphilicity index with the use of the DBAASP database. Based on physicochemical properties calculations the anti-microbial properties were comparatively analyzed and many predicted AMPs had the potential to be utilized against various targets. The study resulted in identifying 44,774 potential AMPs from the selected five tropical and subtropical fruit crops. All the Data from the analysis are stored in the public domain of the Mendeley website. Anyone can access further studies that may result in green technology in controlling diseases both for plants and animals, including human beings.
DOI: 10.17632/spwkm9jpb6.1
title: LINF_210018300

description: 40S ribosomal protein S23 | uS12 Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.15163590
title: Supplementary Material for: WT1 Pathogenic Variants are Associated with a Broad Spectrum of Differences in Sex Development Phenotypes and Heterogeneous Progression of Renal Disease

description: Wilms’ tumor suppressor gene 1 (<i>WT1</i>) plays an essential role in urogenital and kidney development. Heterozygous germline pathogenic allelic variants of <i>WT1</i> have been classically associated with Denys–Drash syndrome (DDS) and Frasier syndrome (FS). Usually, exonic pathogenic missense variants in the zinc finger region are the cause of DDS, whereas pathogenic variants affecting the canonic donor lysine-threonine-serine splice site in intron 9 cause FS. Phenotypic overlap between <i>WT1</i> disorders has been frequently observed. New <i>WT1</i> variant-associated phenotypes, such as 46,XX testicular/ovarian-testicular disorders of sex development (DSD) and primary ovarian insufficiency, have been reported. In this report, we describe the phenotypes and genotypes of 7 Brazilian patients with pathogenic <i>WT1</i> variants. The molecular study involved Sanger sequencing and massively parallel targeted sequencing using a DSD-associated gene panel. Six patients (5 with a 46,XY karyotype and 1 with a 46,XX karyotype) were initially evaluated for atypical genitalia, and a 46,XY patient with normal female genitalia sought medical attention for primary amenorrhea. Germ cell tumors were identified in 2 patients, both with variants affecting alternative splicing of <i>WT1</i> between exons 9 and 10. Two pathogenic missense <i>WT1</i> variants were identified in two 46,XY individuals with Wilms’ tumors; both patients were &lt;1 year of age at the time of diagnosis. A novel <i>WT1</i> variant<i>,</i> c.1453_1456 (p.Arg485Glyfs*14), was identified in a 46,XX patient with testicular DSD. Nephrotic proteinuria was diagnosed in all patients, including 3 who underwent renal transplantation after progressing to end-stage kidney disease. The expanding phenotypic spectrum associated with <i>WT1</i> variants in XY and XX individuals confirms their pivotal role in gonadal and renal development as well as in tumorigenesis, emphasizing the clinical implications of these variants in genetic diagnosis.
DOI: 10.6084/m9.figshare.15163590.v1
title: Supplementary Material for: WT1 Pathogenic Variants are Associated with a Broad Spectrum of Differences in Sex Development Phenotypes and Heterogeneous Progression of Renal Disease

description: Wilms’ tumor suppressor gene 1 (<i>WT1</i>) plays an essential role in urogenital and kidney development. Heterozygous germline pathogenic allelic variants of <i>WT1</i> have been classically associated with Denys–Drash syndrome (DDS) and Frasier syndrome (FS). Usually, exonic pathogenic missense variants in the zinc finger region are the cause of DDS, whereas pathogenic variants affecting the canonic donor lysine-threonine-serine splice site in intron 9 cause FS. Phenotypic overlap between <i>WT1</i> disorders has been frequently observed. New <i>WT1</i> variant-associated phenotypes, such as 46,XX testicular/ovarian-testicular disorders of sex development (DSD) and primary ovarian insufficiency, have been reported. In this report, we describe the phenotypes and genotypes of 7 Brazilian patients with pathogenic <i>WT1</i> variants. The molecular study involved Sanger sequencing and massively parallel targeted sequencing using a DSD-associated gene panel. Six patients (5 with a 46,XY karyotype and 1 with a 46,XX karyotype) were initially evaluated for atypical genitalia, and a 46,XY patient with normal female genitalia sought medical attention for primary amenorrhea. Germ cell tumors were identified in 2 patients, both with variants affecting alternative splicing of <i>WT1</i> between exons 9 and 10. Two pathogenic missense <i>WT1</i> variants were identified in two 46,XY individuals with Wilms’ tumors; both patients were &lt;1 year of age at the time of diagnosis. A novel <i>WT1</i> variant<i>,</i> c.1453_1456 (p.Arg485Glyfs*14), was identified in a 46,XX patient with testicular DSD. Nephrotic proteinuria was diagnosed in all patients, including 3 who underwent renal transplantation after progressing to end-stage kidney disease. The expanding phenotypic spectrum associated with <i>WT1</i> variants in XY and XX individuals confirms their pivotal role in gonadal and renal development as well as in tumorigenesis, emphasizing the clinical implications of these variants in genetic diagnosis.
DOI: 10.6084/m9.figshare.14394446
title: Finnish FSS scale validation data and analysis code

description: Data and R code to replicate the analyses for the scale validation paper "Psychometric Analysis of the Flow Short Scale translated to Finnish".
DOI: 10.6084/m9.figshare.14394446.v1
title: Finnish FSS scale validation data and analysis code

description: Data and R code to replicate the analyses for the scale validation paper "Psychometric Analysis of the Flow Short Scale translated to Finnish".
DOI: 10.5281/zenodo.5168692
title: Data for "Unfolding the Structural Stability of Nanoalloys via a Combination of Symmetry-Constrained Genetic Algorithm and Neural Network Potential"

description: PtNi_alloy_eam.db is the dataset (ase.db object) consisting of 55982 intially sampled Pt-Ni alloy structures with EAM energies and forces. PtNi_alloy_dft.db is the dataset (ase.db object) consisting of the final 6828 resampled Pt-Ni alloy structures with DFT energies and forces calculated by VASP. This is the training set for the NNP, and could be very useful for fitting other machine learning models. PtNi_nanoalloy_vertices_nnp.db is the dataset (ase.db object) consisting of all the vertices (stable structures) on the convex hulls obtained from NNP-based SCGA runs on 36 Pt-Ni nanoalloy systems. The energies are given by the NNP. Additional information such as mixing energy, motif and symmetry axis are also saved in the dataset and can be queried by the 'data' keyword. Input_and_scripts.zip provides all the input files and scripts for hybrid MC-MD simulations, bootstrap ensemble resampling, DFT calculations, NNP training, NNP-based SCGA runs and convex hull analysis.
DOI: 10.14469/hpc/8699
title: IR data

description: IR Data.
DOI: 10.14469/hpc/8702
title: NMR Data

description: NMR Data for compounds in manuscript
DOI: 10.5281/zenodo.5195343
title: Wildlife gardening: an urban nexus of social and ecological relationships

description: Data and R script codes to conduct analysis for: Wildlife gardening: an urban nexus of social and ecological relationships Laura Mumaw and Luis Mata https://ecoevorxiv.org/9rkhm/ <strong>Abstract</strong> Biodiversity in urban environments continues to decline, alongside diminution of human connections with nature and community. An integrated ethic and practice of caring for one’s human and ecological community could help address these issues. Here, we describe how wildlife gardening can be such a pathway. We snapshot related social dynamics and human wellbeing benefits, highlighting a case study that reveals an array of connections and wellbeing facets from wildlife gardening, and their relationship with number of activities and time spent in the garden. We outline how positive biodiversity outcomes can be attained through habitat improvement in gardens. We describe how integration of nature and human community stewardship can work across physical and political boundaries when government and communities work collaboratively. We argue that wildlife gardening carried out in this manner can involve urban residents in crafting and enacting an intertwined ethic and practice of caring for nature and humanity.
DOI: 10.5281/zenodo.5195342
title: Wildlife gardening: an urban nexus of social and ecological relationships

description: Data and R script codes to conduct analysis for: Wildlife gardening: an urban nexus of social and ecological relationships Laura Mumaw and Luis Mata https://ecoevorxiv.org/9rkhm/ <strong>Abstract</strong> Biodiversity in urban environments continues to decline, alongside diminution of human connections with nature and community. An integrated ethic and practice of caring for one’s human and ecological community could help address these issues. Here, we describe how wildlife gardening can be such a pathway. We snapshot related social dynamics and human wellbeing benefits, highlighting a case study that reveals an array of connections and wellbeing facets from wildlife gardening, and their relationship with number of activities and time spent in the garden. We outline how positive biodiversity outcomes can be attained through habitat improvement in gardens. We describe how integration of nature and human community stewardship can work across physical and political boundaries when government and communities work collaboratively. We argue that wildlife gardening carried out in this manner can involve urban residents in crafting and enacting an intertwined ethic and practice of caring for nature and humanity.
DOI: 10.5281/zenodo.5181391
title: Metagenome-assembled genomes(MAGs) generated from ocean (PRJEB1787).

description: MAGs generated from ocean (PRJEB1787) with Maxbin2, VAMB, Metabat2, SemiBin(single-sample binning) and VAMB, SemiBin(multi-sample binning). Single-sample binning: Maxbin2.tar.gz, Metabat2.tar.gz, VAMB.tar.gz and SemiBin(_pretrain).tar.gz. Multi-sample binning: VAMB_multi.tar.gz and SemiBin_multi.tar.gz.
DOI: 10.5281/zenodo.5181390
title: Metagenome-assembled genomes(MAGs) generated from ocean (PRJEB1787).

description: MAGs generated from ocean (PRJEB1787) with Maxbin2, VAMB, Metabat2, SemiBin(single-sample binning) and VAMB, SemiBin(multi-sample binning). Single-sample binning: Maxbin2.tar.gz, Metabat2.tar.gz, VAMB.tar.gz and SemiBin(_pretrain).tar.gz. Multi-sample binning: VAMB_multi.tar.gz and SemiBin_multi.tar.gz.
DOI: 10.6084/m9.figshare.15163674
title: Supplementary Material for: Consumer Preference and Willingness to Pay for Direct-to-Consumer Mobile Teledermoscopy Services in Australia

description: <b><i>Objective:</i></b> To investigate consumer preference and willingness to pay for mobile teledermoscopy services in Australia. <b><i>Methods:</i></b> Consumers who were taking part in a randomised controlled trial comparing mobile teledermoscopy and skin self-examination were asked to complete a survey which incorporated a discrete choice experiment (DCE) and a contingent valuation question. Responses were used to determine their willingness to pay for mobile teledermoscopy services in Australia and their overall service preferences. <b><i>Results:</i></b> The 199 consumers who responded were 71% female and had a mean age of 42 years (range, 18–73). The DCE results showed that consumers prefer a trained medical professional to be involved in their skin cancer screening. Consumers were willing to pay AUD 41 to change from a general practitioner reviewing their lesions in-person to having a dermatologist reviewing the teledermoscopy images. Additionally, they were willing to pay for services that had shorter waiting times, that reduced the time away from their usual activities, and that have higher accuracy and lower likelihood of unnecessary excision of a skin lesion. When asked directly about their willingness to pay for a teledermoscopy service using a contingent valuation question, the majority (73%) of consumers selected the lowest two value brackets of AUD 1–20 or AUD 21–40. <b><i>Conclusion:</i></b> Consumers are willing to pay out of pocket to access services with attributes such as a dermatologist review, improved accuracy, and fewer excisions.
DOI: 10.6084/m9.figshare.15163674.v1
title: Supplementary Material for: Consumer Preference and Willingness to Pay for Direct-to-Consumer Mobile Teledermoscopy Services in Australia

description: <b><i>Objective:</i></b> To investigate consumer preference and willingness to pay for mobile teledermoscopy services in Australia. <b><i>Methods:</i></b> Consumers who were taking part in a randomised controlled trial comparing mobile teledermoscopy and skin self-examination were asked to complete a survey which incorporated a discrete choice experiment (DCE) and a contingent valuation question. Responses were used to determine their willingness to pay for mobile teledermoscopy services in Australia and their overall service preferences. <b><i>Results:</i></b> The 199 consumers who responded were 71% female and had a mean age of 42 years (range, 18–73). The DCE results showed that consumers prefer a trained medical professional to be involved in their skin cancer screening. Consumers were willing to pay AUD 41 to change from a general practitioner reviewing their lesions in-person to having a dermatologist reviewing the teledermoscopy images. Additionally, they were willing to pay for services that had shorter waiting times, that reduced the time away from their usual activities, and that have higher accuracy and lower likelihood of unnecessary excision of a skin lesion. When asked directly about their willingness to pay for a teledermoscopy service using a contingent valuation question, the majority (73%) of consumers selected the lowest two value brackets of AUD 1–20 or AUD 21–40. <b><i>Conclusion:</i></b> Consumers are willing to pay out of pocket to access services with attributes such as a dermatologist review, improved accuracy, and fewer excisions.