cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m1mvcz
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lupinus campestris Schltdl. & Cham.",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004764-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25sbhg
title: Occurrence Download

description: A dataset containing 43210 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Acanthus mollis L., Asystasia gangetica (L.) T.Anderson, Barleria cristata L., Barleria prionitis L., Brillantaisia lamium (Nees) Benth., Hemigraphis reptans Engl., 1886, Hygrophila polysperma (Roxb.) T.Anderson, Hypoestes phyllostachya Baker, Justicia aurea Schltdl., Justicia betonica L.)"
 ]
}

 The dataset includes 43210 records from 649 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163626-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cuorkb
title: Occurrence Download

description: A dataset containing 8964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Odonata",
 "HasCoordinate is TRUE",
 "BasisOfRecord is Specimen",
 "HasGeospatialIssue is FALSE",
 "DecimalLatitude is greater than -50",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -85",
 "DecimalLongitude is less than -40"
 ]
}

 The dataset includes 8964 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004764-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mr9c7d
title: Occurrence Download

description: A dataset containing 2296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Barleria cristata L.)"
 ]
}

 The dataset includes 2296 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163631-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ry6jbi
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Nepal",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Falco severus Horsfield, 1821",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004764-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dgsh2
title: Occurrence Download

description: A dataset containing 22987 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Acanthus mollis L.)"
 ]
}

 The dataset includes 22987 records from 311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163636-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewzaho
title: Occurrence Download

description: A dataset containing 6182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ligustrum sinense Lour.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6182 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004764-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pd45sw
title: Occurrence Download

description: A dataset containing 16801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "PublishingCountry is one of (India, Pakistan, Afghanistan, Bhutan, Nepal)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 16801 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163716-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8vs68
title: Occurrence Download

description: A dataset containing 2289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Accipiter soloensis (Horsfield, 1821)"
 ]
}

 The dataset includes 2289 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000076-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7blxl
title: Occurrence Download

description: A dataset containing 131732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Country is Chile",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 131732 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004765-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7swqu
title: Occurrence Download

description: A dataset containing 43210 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Acanthus mollis L., Asystasia gangetica (L.) T.Anderson, Barleria cristata L., Barleria prionitis L., Brillantaisia lamium (Nees) Benth., Hemigraphis reptans Engl., 1886, Hygrophila polysperma (Roxb.) T.Anderson, Hypoestes phyllostachya Baker, Justicia aurea Schltdl., Justicia betonica L.)"
 ]
}

 The dataset includes 43210 records from 649 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163624-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26696673
title: Additional file 3 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

description: Additional file 3: Table S2. Enriched motifs in more accessible and less accessible peaks in response to CC16 deficiency for each cell type. This table is provided as a separate file. Column 1: Cell type in which the test was performed. Column 2: Changing direction of differentially accessible peaks that were used to perform the test. Column 3: Motif ID. Column 4: Motif name. Column 5: The number of differential peaks that contain the motif identified. Column 6: The number of background peaks that contain the motif identified. Column 7: The percentage of differential peaks that contain the motif identified. Column 8: The percentage of background peaks that contain the motif identified. Column 9: The ratio of the observed frequency of the motif in differential peaks to the expected frequency calculated by the background peaks. Column 10: Raw p-value. Column 11: FDR-adjusted p-value.
DOI: 10.15468/dl.r9qtbq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.551412 -32.829622, 148.551412 -32.840851, 148.558149 -32.840851, 148.558149 -32.834113, 148.553657 -32.834113, 148.553657 -32.829622, 148.551412 -32.829622))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067731-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26696676
title: Additional file 4 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

description: Additional file 4: Table S3. KEGG pathways enriched in differential peaks between CC16-/- and WT samples for each cell type. This table is provided as a separate file. Column 1: Cell type in which the test was performed. Column 2: KEGG pathway ID. Column 3: Description of KEGG pathway. Column 4: Fraction of non-gap base pairs in the genome that lie in the regulatory domain of a gene with the annotation. Column 5: Actual number of differential peaks with the annotation. Column 6: Fold enrichment of number of differential peaks with the annotation. Column 7: Uncorrected p-value from the binomial test over genomic regions. Column 8: FDR-adjusted p-value for the binomial test. Column 9: Mean absolute distance of input regions to TSS of genes in a gene set. Column 10: Actual number of genes linking to a differential peak with the annotation. Column 11: Number of genes in the genome with the annotation. Column 12: Fold enrichment of number of genes linking to a differential peak with the annotation. Column 13: Uncorrected p-value from the hypergeometric test over genes. Column 14: FDR-adjusted p-value for the hypergeometric test.
DOI: 10.6084/m9.figshare.26696676.v1
title: Additional file 4 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

description: Additional file 4: Table S3. KEGG pathways enriched in differential peaks between CC16-/- and WT samples for each cell type. This table is provided as a separate file. Column 1: Cell type in which the test was performed. Column 2: KEGG pathway ID. Column 3: Description of KEGG pathway. Column 4: Fraction of non-gap base pairs in the genome that lie in the regulatory domain of a gene with the annotation. Column 5: Actual number of differential peaks with the annotation. Column 6: Fold enrichment of number of differential peaks with the annotation. Column 7: Uncorrected p-value from the binomial test over genomic regions. Column 8: FDR-adjusted p-value for the binomial test. Column 9: Mean absolute distance of input regions to TSS of genes in a gene set. Column 10: Actual number of genes linking to a differential peak with the annotation. Column 11: Number of genes in the genome with the annotation. Column 12: Fold enrichment of number of genes linking to a differential peak with the annotation. Column 13: Uncorrected p-value from the hypergeometric test over genes. Column 14: FDR-adjusted p-value for the hypergeometric test.
DOI: 10.6084/m9.figshare.26696679
title: Additional file 5 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

description: Additional file 5: Table S4. Sequences of Tn5 linker oligos. The ‘N’ bases shown in the Tn5ME-B sequence represent the Tn5 barcodes. Table S5. Tn5 barcode sequences. Column 1 shows the well ID for each well on the iTSM plate. Column 2 shows the sequences of Tn5 barcodes assigned to each well. Column 3 is the 12 numerical labels for the plate columns. Column 4 is the 8 alphabetical labels for the plate rows. This table is provided as a separate file. Table S6. Well IDs of Tn5 barcodes assigned to each sample or species-mixing condition in each experiment. Column 1 shows the figure number for each experiment. Column 2 shows the experimental conditions employed in each figure. Column 3 indicates the species-mixing condition. Column 4 shows the cell source of human samples. Column 5 shows the number of human nuclei loaded to each well. Column 6 shows the cell source of mouse samples. Column 7 shows the number of mouse nuclei loaded to each well. Column 8 indicates the nuclei preparation method (Fresh vs. Frozen). Column 9 is the well ID on the iTSM plate (see Tn5 barcode sequences in Additional file 5: Table S5) assigned to each sample or barnyard experiment. This table is provided as a separate file. Table S7. TruSeq i7 index sequences used for each library in Sample Index PCR. Column 1 shows the index ID. Column 2 shows the oligo sequence. Column 3 indicates the barcode sequence assigned to each library shown in Column 4. Table S8. DNA oligonucleotides used to block barcode swapping. Each row provides the sequence of an oligo used in the barcode swapping blocking tests. The lowercase letters shown in the full SBS primer represent the barcode sequence. For Decoy DNA, the strands A and B were annealed to form a duplex DNA.
DOI: 10.6084/m9.figshare.26696679.v1
title: Additional file 5 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

description: Additional file 5: Table S4. Sequences of Tn5 linker oligos. The ‘N’ bases shown in the Tn5ME-B sequence represent the Tn5 barcodes. Table S5. Tn5 barcode sequences. Column 1 shows the well ID for each well on the iTSM plate. Column 2 shows the sequences of Tn5 barcodes assigned to each well. Column 3 is the 12 numerical labels for the plate columns. Column 4 is the 8 alphabetical labels for the plate rows. This table is provided as a separate file. Table S6. Well IDs of Tn5 barcodes assigned to each sample or species-mixing condition in each experiment. Column 1 shows the figure number for each experiment. Column 2 shows the experimental conditions employed in each figure. Column 3 indicates the species-mixing condition. Column 4 shows the cell source of human samples. Column 5 shows the number of human nuclei loaded to each well. Column 6 shows the cell source of mouse samples. Column 7 shows the number of mouse nuclei loaded to each well. Column 8 indicates the nuclei preparation method (Fresh vs. Frozen). Column 9 is the well ID on the iTSM plate (see Tn5 barcode sequences in Additional file 5: Table S5) assigned to each sample or barnyard experiment. This table is provided as a separate file. Table S7. TruSeq i7 index sequences used for each library in Sample Index PCR. Column 1 shows the index ID. Column 2 shows the oligo sequence. Column 3 indicates the barcode sequence assigned to each library shown in Column 4. Table S8. DNA oligonucleotides used to block barcode swapping. Each row provides the sequence of an oligo used in the barcode swapping blocking tests. The lowercase letters shown in the full SBS primer represent the barcode sequence. For Decoy DNA, the strands A and B were annealed to form a duplex DNA.
DOI: 10.6084/m9.figshare.26696673.v1
title: Additional file 3 of txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

description: Additional file 3: Table S2. Enriched motifs in more accessible and less accessible peaks in response to CC16 deficiency for each cell type. This table is provided as a separate file. Column 1: Cell type in which the test was performed. Column 2: Changing direction of differentially accessible peaks that were used to perform the test. Column 3: Motif ID. Column 4: Motif name. Column 5: The number of differential peaks that contain the motif identified. Column 6: The number of background peaks that contain the motif identified. Column 7: The percentage of differential peaks that contain the motif identified. Column 8: The percentage of background peaks that contain the motif identified. Column 9: The ratio of the observed frequency of the motif in differential peaks to the expected frequency calculated by the background peaks. Column 10: Raw p-value. Column 11: FDR-adjusted p-value.
DOI: 10.6084/m9.figshare.26613527
title: Additional file 1 of EspE3 plays a role in the pathogenicity of avian pathogenic Escherichia coli

description: Additional file 1. Primers used in this study. This table contains the primer sequences used in this study.
DOI: 10.15468/dl.sgcuqk
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pueraria pulcherrima Merr. ex Koord.-Schum."
 ]
}

 The dataset includes 190 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067732-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26613553
title: Additional file 2 of Single-cell RNA reveals a tumorigenic microenvironment in the interface zone of human breast tumors

description: Additional file 2. Table S5 Specific information for marker genes.
DOI: 10.6084/m9.figshare.26613553.v1
title: Additional file 2 of Single-cell RNA reveals a tumorigenic microenvironment in the interface zone of human breast tumors

description: Additional file 2. Table S5 Specific information for marker genes.
DOI: 10.15468/dl.dnxv9g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.630014 -32.829622, 148.630014 -32.836359, 148.634506 -32.836359, 148.634506 -32.829622, 148.630014 -32.829622))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067733-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26613527.v1
title: Additional file 1 of EspE3 plays a role in the pathogenicity of avian pathogenic Escherichia coli

description: Additional file 1. Primers used in this study. This table contains the primer sequences used in this study.
DOI: 10.6084/m9.figshare.26574250.v1
title: Additional file 2 of The oncogenic circular RNA circ_63706 is a potential therapeutic target in sonic hedgehog-subtype childhood medulloblastomas

description: Additional file 2: Supplementary Methods.
DOI: 10.6084/m9.figshare.26574250
title: Additional file 2 of The oncogenic circular RNA circ_63706 is a potential therapeutic target in sonic hedgehog-subtype childhood medulloblastomas

description: Additional file 2: Supplementary Methods.
DOI: 10.15468/dl.3eup7m
title: Occurrence Download

description: A dataset containing 1273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen, Living Specimen, Occurrence evidence)",
 "Country is Mexico",
 "TaxonKey is Tillandsia ionantha Planch."
 ]
}

 The dataset includes 1273 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067734-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26613464
title: Additional file 1 of Heritability and recursive influence of host genetics on the rumen microbiota drive body weight variance in male Hu sheep lambs

description: Additional file 1: Table S1. Diet and Animal cohort information. Table S2. Prevalence (detection rates) and mean relative abundance of rumen microbiota genera in a single large-scale homogeneous population-based cohort of 1,150 sheep. Table S3. Keystone taxa (rumen microbiota genera) in a single large-scale homogeneous population-based cohort of 1150 sheep. Table S4. The microbial alpha diversity indices and beta diversity. Table S5. Heritability of rumen microbiota. Table S6. Single nucleotide polymorphisms (SNPs) information. Table S7. Genome-wide association of sheep genetic and rumen microbial variations. Table S8. Heritability and Microbiability of Body Weight Traits in Sheep. Table S9. microbiome-wide association study (MWAS). Table S10. GWAS for sheep body weight at 180 days old. Table S11. Microbiota mediated indirect scenarios. Table S12. 'recursive' scenarios.
DOI: 10.6084/m9.figshare.26696813
title: Additional file 3 of Multimorbidity healthcare expenditure in Belgium: a 4-year analysis (COMORB study)

description: Additional file 3. Model outputs.
DOI: 10.6084/m9.figshare.26696813.v1
title: Additional file 3 of Multimorbidity healthcare expenditure in Belgium: a 4-year analysis (COMORB study)

description: Additional file 3. Model outputs.
DOI: 10.6084/m9.figshare.26696816
title: Additional file 4 of Multimorbidity healthcare expenditure in Belgium: a 4-year analysis (COMORB study)

description: Additional file 4. Prevalence of singles chronic conditions—dyads—triads.
DOI: 10.6084/m9.figshare.26696816.v1
title: Additional file 4 of Multimorbidity healthcare expenditure in Belgium: a 4-year analysis (COMORB study)

description: Additional file 4. Prevalence of singles chronic conditions—dyads—triads.
DOI: 10.6084/m9.figshare.26696819
title: Additional file 5 of Multimorbidity healthcare expenditure in Belgium: a 4-year analysis (COMORB study)

description: Additional file 5. Costs of single chronic conditions—dyads—triads.
DOI: 10.6084/m9.figshare.26696819.v1
title: Additional file 5 of Multimorbidity healthcare expenditure in Belgium: a 4-year analysis (COMORB study)

description: Additional file 5. Costs of single chronic conditions—dyads—triads.
DOI: 10.15468/dl.q422vy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.65921 -32.820639, 148.65921 -32.827376, 148.661456 -32.827376, 148.661456 -32.840851, 148.665947 -32.840851, 148.665947 -32.843097, 148.681668 -32.843097, 148.681668 -32.845342, 148.688405 -32.845342, 148.688405 -32.843097, 148.683914 -32.843097, 148.683914 -32.836359, 148.690651 -32.836359, 148.690651 -32.829622, 148.695143 -32.829622, 148.695143 -32.834113, 148.699634 -32.834113, 148.699634 -32.829622, 148.697388 -32.829622, 148.697388 -32.827376, 148.695143 -32.827376, 148.695143 -32.82513, 148.681668 -32.82513, 148.681668 -32.820639, 148.679422 -32.820639, 148.679422 -32.818393, 148.672685 -32.818393, 148.672685 -32.820639, 148.668193 -32.820639, 148.668193 -32.82513, 148.665947 -32.82513, 148.665947 -32.820639, 148.65921 -32.820639), (148.690651 -32.829622, 148.688405 -32.829622, 148.688405 -32.834113, 148.683914 -32.834113, 148.683914 -32.827376, 148.690651 -32.827376, 148.690651 -32.829622), (148.67493 -32.82513, 148.679422 -32.82513, 148.679422 -32.829622, 148.67493 -32.829622, 148.67493 -32.834113, 148.681668 -32.834113, 148.681668 -32.836359, 148.665947 -32.836359, 148.665947 -32.829622, 148.668193 -32.829622, 148.668193 -32.827376, 148.67493 -32.827376, 148.67493 -32.82513)), ((148.656964 -32.813901, 148.65921 -32.813901, 148.65921 -32.811655, 148.656964 -32.811655, 148.656964 -32.813901)), ((148.656964 -32.813901, 148.652472 -32.813901, 148.652472 -32.820639, 148.65921 -32.820639, 148.65921 -32.818393, 148.656964 -32.818393, 148.656964 -32.813901)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067735-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26696909
title: Additional file 2 of Integrating genes and metabolites: unraveling mango's drought resilience mechanisms

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.26696909.v1
title: Additional file 2 of Integrating genes and metabolites: unraveling mango's drought resilience mechanisms

description: Supplementary Material 2.