cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qsk7d6
title: Occurrence Download

description: A dataset containing 562 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melodinus fusiformis Champion ex Benth."
 ]
}

 The dataset includes 562 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054632-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qqzje
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medinilla cordata Merr."
 ]
}

 The dataset includes 96 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054633-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yavas7
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miliusa wightiana Hook.f. & Thomson"
 ]
}

 The dataset includes 45 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054635-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddd9ud
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moraea longifolia (Jacq.) Pers."
 ]
}

 The dataset includes 67 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054634-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cp47mv
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Margaritaria decaryana (Leandri) G.L.Webster"
 ]
}

 The dataset includes 126 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054636-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.30176
title: Benchmark Hypergraphs And Detailed Experimental Results Of "K-Way Hypergraph Partitioning Via N-Level Recursive Bisection"

description: This dataset contains hypergraphs derived from three benchmark sets: The<br>
ISPD98 VLSI Circuit Benchmark Suite [1], the University of Florida Sparse Matrix Collec-<br>
tion [2] and the international SAT Competition 2014 [3]. From the latter, we randomly selected<br>
100 instances from the application track and converted them into hypergraphs as follows:<br>
Each boolean variable (and its complement) is mapped to one vertex and each clause constitutes<br>
a net [41]. The Sparse Matrix Collection is organized into 172 groups and each group contains<br>
matrices of different application areas. From each group, we choose one matrix for each appli-<br>
cation area that has between 10 000 and 10 000 000 columns. In case multiple matrices fulfill<br>
our criteria, we randomly select one. In total, we include 192 matrices, which are translated into<br>
hypergraphs using the row-net model, i.e. each row is treated as a net and each column as<br>
a vertex. Empty rows are discarded. Both vertices and nets have unit weight. Together with the<br>
18 ISPD98 VLSI instances , a total of 310 hypergraphs constitute our benchmark set. 4 Each of<br>
these hypergraphs is partitioned into k ∈ {2, 4, 8, 16, 32, 64, 128} blocks with ε = 0.03. For each<br>
value of k, a k-way partition is considered to be one test instance, resulting in a total of 2170<br>
instances.

See the README for further information on the different files contained in this dataset.

[1 ]C. J. Alpert. The ISPD98 Circuit Benchmark Suite. In Proc. of the 1998 Int. Symp. on Physical Design, ISPD ’98, pages 80–85, New York, 1998. ACM.<br>
[2] T. A. Davis and Y. Hu. The University of Florida Sparse Matrix Collection. ACM Trans. Math. Softw.,38(1):1:1–1:25, 2011.<br>
[3] A. Belov, D. Diepold, M. Heule, and M. Järvisalo. The SAT Competition 2014. http://www.satcompetition.org/2014/, 2014.
DOI: 10.5281/zenodo.30516
title: Data From Study: Respiratory Motion Correction Of Pet Using Mr-Constrained Pet-Pet Registration

description: This dataset contains the data used to arrive at the conclusions in the research article <em>Respiratory Motion Correction of PET using MR-Constrained PET-PET Registration</em>, by Balfour et al [<em>BioMedical Engineering OnLine</em> 2015, <strong>14</strong>:85].

This study was based upon motion-affected PET images simulated from real dynamic MR image volumes, simulated and reconstructed using the Software for Tomographic Image Reconstruction ("STIR", see http://stir.sourceforge.net/). This dataset includes data from MR scans of 4 healthy volunteers (male, aged 22-33).

Three types of data are provided, which should be sufficient for repeating the findings of the study:


	Reconstructed PET image volumes, split into 6 respiratory bins ("gates") for each simulation
	The dynamic 3D MR volumes used to derive the respiratory motion of each volunteer
	Text files outline which dynamics have NOT been used for PET simulation - these are the ones used to make the motion model in the study


These MR volumes were registered and combined with the head-foot position of the right hemidiaphragm to form a respiratory motion model, which was subsequently used to constrain PET to PET image registration, attempting to correct for the motion in the PET images.

For more detailed information regarding the method, please refer to the article.

The PET data is split into several sub-categories:


	Volunteer ID (4 possibilities, anonymised)
	Lesion position (9 possibilities - see article for locations)
	Lesion diameter, in millimetres (10 or 14 mm)
	Respiratory gate number, ranging from 1 (most inhaled) to 6 (most exhaled)


Note that there are two types of each simulation: with motion, and without motion. These are included in the respective zip files for each volunteer ID.
description: The file names reflect which image the file contains according to a number of substrings. As outlined in the description, there are several tags associated with each PET simulation. Specifically these are:
- volnN, where N refers to the volunteer identification number (1-4)
- motionless simulations contain the tag "stat", short for "static"
- LesPosN, where N refers to the lesion position (1-9)
- LesDiamN, where N refers to the lesion diameter in mm (10 or 14)
- gateN, where N is the respiratory bin

Note that all PET image intensities are multiplied by 100 to avoid problems with numerical precision. All PET filenames contain the substring "x100" to remind the user of this.

Each set of PET images are zipped according to volunteer ID and motion status: whether motion is included (substring "wMotion") or not included ("noMotion"). Note that the latter was used for validation purposes.

All MR dynamic images are contained within "Dynamics.zip", which follow the tagging system mentioned above - only volunteer ID and the dynamic number are included. Note that there are a total of 35 dynamic volumes for each volunteer, except for volunteer 4, for which there are 70 volumes available. These have been included for completeness.
DOI: 10.5281/zenodo.31711
title: Crocodile Tracks And Trackways: Photogrammetric Models And Photo Datasets.

description: 3D models and photosets of Crocodile tracks and trackways

The files in this dataset comprise zip folders containing a set of photos, and a  textured mesh, of trackways made by 12 species of crocodile.

The physical casts were originally described in:

Milàn, J. and R. Hedegaard (2010). "Interspecific variation in tracks and trackways from extant crocodiles." New Mexico Museum of Natural History and Science Bulletin <strong>51</strong>: 15-30

The data presented here are newly generated photogrammetric models, along with the associated photo sets. The models themselves have been reduced in order to keep file size manageable, but all photos have been included at full resolution so that others can produce their own high-res models from them.

Included data are as follows:

Alligator sinensis | (Chinese Alligator) | 15-20 kg, 160 cm<br>
Caiman crocodylus | (Spectacled caiman) | 12 kg, 130 cm<br>
Caiman latirostris | (Broad-nosed caiman) | 13 kg, 135 cm (pregnant)<br>
Caiman latirostris II | (Broad-nosed caiman) | 1.5 kg, 70 cm<br>
Crocodylus cataphractus | (Slender-snouted crocodile) | 7 kg, 149 cm<br>
Crocodylus johnsoni | (Fresh water crocodile) | 5 kg, 112 cm<br>
Crocodylus johnsoni II | (Fresh water crocodile) | 25 kg, 90 cm<br>
Crocodylus novaeguineae | (New Guinea crocodile) | 15 kg, 175 cm<br>
Crocodylus rhombifer | (Cuban crocodile) | 2 kg, 80 cm<br>
Crocodylus siamensis | (Siamese crocodile) | 10 kg, 140 cm<br>
Gavialis gagesticus | (Gharial) | 40 kg, 225 cm<br>
Osteolaemus tatraspis | (Dwarf crocodile) | 2 kg, 79 cm<br>
Paleosuchus palpebrosus | (Dwarf caiman) | 15 kg, 140 cm<br>
Paleosuchus palpebrosus II | (Dwarf caiman) | 0.5 kg, 50 cm<br>
Tomistoma schlegelii (1x Manus, 2 x Pes) | (False gharial) | 270 cm
DOI: 10.5281/zenodo.31732
title: @Gccaedits Data - October 2015 Accession

description: @gccaedits data - October 2015 accession

Description

This release contains Twitter archive requests of the @gccaedits account up to October 1, 2015.

You should be able to download the release and open an index.html, from a given accession, with your browser to view the archive.

License

The contents of each accession's data directory and tweets.csv are Public Domain (CC0) licensed.
DOI: 10.15468/zjsmvy
title: Mamíferos de la Estrella Fluvial de Inírida: ríos Inírida, Guaviare, Atabapo y Orinoco (Colombia)

description: La mastofauna registrada para la Estrella Fluvial de Inírida se presenta en un listado taxonómico construido a partir de información generada en estudios de campo y revisión de colecciones. Para esta región específica de la Orinoquia colombiana se registran 86 especies de mamíferos pertenecientes a 11 órdenes y 28 familias. En esta zona prioritaria para la conservación en Colombia, se identifican 15 especies de mamíferos amenazados de acuerdo con las categorías nacionales. Según información reportada por las comunidades locales, 12 especies tienen asignado un valor de uso.
DOI: 10.17632/yfjhg34798.1
title: Personal archiving, personal information management, and pornography

description: This data was scraped from Reddit in 2014. It was used to investigate personal information management and personal archiving. It was used for a paper - presented at the 2014 AERI Conference and is to be published in the conference proceedings. Ramdeen, S. & Poole, A. H. (Forthcoming). “Leaving the mouse on the left is the new leaving the tape in the VCR”: Personal archiving, personal information management, and pornography. Studies in archival education and research: Selected papers from the 2014 AERI Conference. Pittsburgh, PA: University of Pittsburgh & Litwin Books.
DOI: 10.17632/smjj59mbmb.1
title: Data for "ENGINEERS DON’T BLOG AND OTHER STORIES: WHY SCOPUS USES SUBJECT AREA BENCHMARKS"

description: - 2.4M publications indexed by Scopus with a publishing data of 2014 - Citation, Altmetric and Mendeley data sampled in September 10, 2015. - Alternative metric data collated into four buckets, as defined by Snowball Metrics: - Social Activity (Twitter, Facebook, Reddit and Google+. - Scholarly Activity (Mendeley and Citeulike). - Scholarly Commentary (blogs, Wikipedia, F1000 Prime, Pubpeer, etc. - Mass media. - Publications’ data assigned to the journals’ Scopus / ASJC mid-tier subject code (many to one relationship – no fractional counting, total publications for all buckets same as given in ‘Citation’). - Counts classified into three groups – no activity (pale pink), 1 count per publication (red), 2 or more counts (green).
DOI: 10.6084/m9.figshare.1564704
title: Comparison of Handedness Questionairre with Brain Hemisity Questionairre for Determining Brain Dominance in Young Adults
DOI: 10.15129/c65de283-9f32-4204-8efb-e11521940ca6
title: Data for Hole transport assisted by the piezoelectric field in In0.4Ga0.6N/GaN quantum wells under electrical injection

description: This dataset contains the measurements presented in Journal of Applied Physics 118, 125709 (2015).
This data is taken from an InGaN/GaN light emitting diode structure with quantum wells that have different Indium content. From the evolution of the spectra under different driving current it can be seen how holes can penetrate surprisingly far into the quantum well structure. Simulation results in figures 7 and 8 indicate that this effect can be explained by the strain-induced piezoelectric field in the devices.
DOI: 10.5525/gla.researchdata.224
title: Using tunable hydrogels for selection of lineage guiding metabolites in stem cell cultures
DOI: 10.5281/zenodo.31810
title: On The Accuracy Of Cache Sharing Models (Data)

description: Data to accompany http://dx.doi.org/10.1145/2188286.2188294.
DOI: 10.15468/dqzpyr
title: Lista de los mamíferos de la cuenca del río Orinoco

description: Se consolida un listado binacional de la mastofauna reportada para toda la cuenca del río Orinoco, constituido por 318 especies que se distribuyen en 12 órdenes, 40 familias y 156 géneros. Esta diversidad representa el 76,8% de la mastofauna venezolana y el 68,7% de la colombiana. El orden Chiroptera es el más representativo con 150 especies (47,5%), seguido por los roedores con 77 especies (24,4%). La región de la Guayana es la más diversa, mientras que en la región Deltaica se presentó el menor valor de riqueza de especies de mamíferos. Las categorías de amenaza asignadas por la UICN y los libros rojos de ambos países, indican que el trabajo en campo y la profundización en estudios taxonómicos y ecológicos son indispensables para la ampliación del conocimiento de la distribución de las especies de mamíferos y la planeación de la conservación en áreas prioritarias para la Orinoquia.
DOI: 10.5281/zenodo.31872
title: Glottolog-Data: Glottolog Database 2.6

description: Hammarström, Harald & Forkel, Robert & Haspelmath, Martin & Bank, Sebastian. 2015. Glottolog 2.6. Jena: Max Planck Institute for the Science of Human History. (Available online at http://glottolog.org)
DOI: 10.15128/br86b3677
title: Furosemide - isonicotinamide cocrystals: An investigation of properties and structural disorder

description: Abstract from article:  Furosemide is a loop diuretic drug marketed in solid form which suffers from low solubility and low permeability. The pharmaceutically relevant properties of a recently described furosemide-isonicotinamide 2:1 cocrystal (2FS-INA) were investigated and compared with those of other known furosemide cocrystals. The intrinsic dissolution rate of 2FS-INA was found to be 1.27 times that of the commercial FS, while the equilibrium solubility of 2FS-INA is 5.6 times higher than that of pure FS. The extensive structural disorder in 2FS-INA observed by diffraction methods was also investigated by variable-temperature solid-state NMR in conjunction with first principles calculations. 15N NMR confirmed the absence of proton disorder in the short OH - - - Nhydrogen bond. The disordered sulphonamide group was found to be dynamic by variable temperature 2H experiments, involving fast exchange of the sulphonamide NH2 protons combined with a rotation of the whole sulphonamide group about the C-S bond with an activation parameter of Ea = 14.9 Å ± 0.6 kJ mol-1. The disorder of the furan rings of both the unique furosemide molecules was also found to be dynamic by 13C experiments, with the same activation barrier of about 23 kJ mol-1 for both rings.
DOI: 10.5281/zenodo.31880
title: Supplemental Information, Code, And Data For The Ms:  Defaunation Impacts Carbon Storage In Tropical Forests.

description: # MS_Carbon<br>
Supplemental information, code, and data for the MS: <br>
Carolina Bello, Mauro Galetti, Marco A. Pizo, Luiz Fernando S. Magnago, Mariana Ferreira Rocha, Renato A. F. Lima, Carlos A. Peres, Otso Ovaskainen, and Pedro Jordano (2015). Defaunation impacts carbon storage in tropical forests.

 

*Summary*:<br>
Carbon storage is widely acknowledged as one of the most valuable forest ecosystem services. Deforestation, logging, fragmentation and climate change have significant impacts on tropical carbon stocks, however an elusive and yet undetected decrease in carbon storage may be due to defaunation of large seed dispersers. Many large tropical trees with sizeable contributions to carbon stock rely on large vertebrates for seed dispersal and regeneration, yet many of these frugivores are threatened by hunting, illegal trade and habitat loss. We used a large dataset on tree species composition and abundance, seed, fruit and carbon related traits, and plant-animal interactions to estimate the loss of carbon storage capacity of tropical forests in defaunated scenarios. By simulating the local extinction of trees that depend on large frugivores at 31 Atlantic Forest communities, we found that defaunation has the potential to significantly erode carbon storage even when only a small proportion (10%) of large-seeded trees are extirpated.
DOI: 10.4119/unibi/2735805
title: Maximum Likelihood Multisensory Integration Toolbox

description: Humans combine redundant multisensory estimates into a coherent multimodal percept. Experiments in cue integration have shown for many modality pairs and perceptual tasks that multisensory information is fused in a statistically optimal manner: Perceptual judgments take the unimodal sensory reliability into consideration and combine the senses according to the rules of Maximum Likelihood Estimation to maximize overall perceptual precision. This toolbox, created by Loes van Dam and Marieke Rohde, serves as a tool for analysing psychophysical data in terms of whether or not such statistically optimal integration of the senses occurs. The toolbox expects both unimodal (single cue) as bimodal (multiple cue) psychophysical data to perform this analysis. Further information on how to use the toolbox can be found in the file "toolbox_documentation.pdf" located inside the toolbox folder. The principles behind optimal multisensory integration and how to measure it are explained in the following paper: Statistically Optimal Multisensory Cue Integration: A Practical Tutorial (submitted to Multisensory Research) by Rohde, M., van Dam, L.C.J. & Ernst, M.O. Please cite this paper if you use the toolbox.
DOI: 10.15469/ocutjy
title: GB22 S08 Dag Endresen

description: GB22 Nodes Training.
Session 08, Sample-data use case 3: Macrophytes12

Riparian vegetation coverage in reaches of the Kinzig river (Germany)
Description

A research team within the Senckenberg Nature Research Society (Senckenberg Gesellschaft für Naturforschung, SGN) maintains a monitoring programme in different reaches of the Kinzig river in Germany. They have set permanent plots where vascular plants are surveyed twice every year (early spring and summer) using the Braun-Blanquet cover-abundance scale (also known as ‘the relevé method’).

This monitoring effort is funded by an international long-term monitoring project which also provides the means to publish the resulting information. The German team sends their data to the data unit via email every year and some time afterwards the information appears in a specialized online portal.
The team is making a big effort in both fieldwork and data preparation and would like to obtain more benefits from it. They are exploring other ways to make the data available, but they are unsure of which requirements in terms of data licensing and restrictions to re- publishing they are subject to as part of the project that is funding their research.
DOI: 10.17608/k6.auckland.2000292.v1
title: Cyber GIScience talk from CyberGIS '14
DOI: 10.17608/k6.auckland.2000292.v2
title: Cyber GIScience talk from CyberGIS '14
DOI: 10.4119/unibi/2777409
title: Phase Contrast and Fluorescence Bacterial Time-Lapse Microscopy Image Data

description: Individual cells in a single bacterial population may differ strikingly and even drive the health and function of the entire cell population. To study this phenomenon of individuality over time and contribute to a new understanding of cellular heterogeneity, single-cell oriented high-resolution time-lapse imaging is necessary. The images pertain to constructs (triple fluorescence reporter cassette) of the symbiotic bacterium Sinorhizobium meliloti growing in a microfluidic bacterial plate and were acquired using two lasers sources (see J.P- Schlueter et al. Journal of Biotechnology 198 (2015) 3-14 for further information).
DOI: 10.5281/zenodo.31836
title: Wyoming Greater Sage Grouse Lek Locations 2015

description: Shapefiles of lek locations for Greater Sage Grouse in Wyoming as provided by the Wyoming Game and Fish Department. 

The data are used in the manuscript by Ramey et al. entitled "Recent Greater Sage Grouse (Centrocercus urophasianus) Population Dynamics in Wyoming Are Primarily Driven by Climate, not Oil and Gas Development" which is available as a preprint from http://dx.doi.org/10.1101/028274.
DOI: 10.5281/zenodo.31912
title: Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa.

description: BACKGROUND:

Turkey is a crossroads of major population movements throughout history and has been a hotspot of cultural interactions. Several studies have investigated the complex population history of Turkey through a limited set of genetic markers. However, to date, there have been no studies to assess the genetic variation at the whole genome level using whole genome sequencing. Here, we present whole genome sequences of 16 Turkish individuals resequenced at high coverage (32×-48×).

RESULTS:

We show that the genetic variation of the contemporary Turkish population clusters with South European populations, as expected, but also shows signatures of relatively recent contribution from ancestral East Asian populations. In addition, we document a significant enrichment of non-synonymous private alleles, consistent with recent observations in European populations. A number of variants associated with skin color and total cholesterol levels show frequency differentiation between the Turkish populations and European populations. Furthermore, we have analyzed the 17q21.31 inversion polymorphism region (MAPT locus) and found increased allele frequency of 31.25% for H1/H2 inversion polymorphism when compared to European populations that show about 25% of allele frequency.

CONCLUSION:

This study provides the first map of common genetic variation from 16 western Asian individuals and thus helps fill an important geographical gap in analyzing natural human variation and human migration. Our data will help develop population-specific experimental designs for studies investigating disease associations and demographic history in Turkey.
description: Data set for the paper: http://www.ncbi.nlm.nih.gov/pubmed/25376095