cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.we5bkk
title: Occurrence Download

description: A dataset containing 43485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Taxodium"
 ]
}

 The dataset includes 43485 records from 494 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003515-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr30206
title: Solution structures of Brd2 second bromodomain in complex with stat3 peptide
DOI: 10.15468/dl.6fvq3d
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Pomacentrus bankanensis"
 ]
}

 The dataset includes 108 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003517-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30619088
title: Impact of wetland degradation on microbial diversity

description: How peatland degradation reshapes soil processes and ecosystem functions.
DOI: 10.6084/m9.figshare.30619088.v2
title: Impact of wetland degradation on microbial diversity

description: How peatland degradation reshapes soil processes and ecosystem functions.
DOI: 10.13018/bmr30207
title: Solution structure of the zinc fingers 1 and 2 of MBNL1
DOI: 10.6084/m9.figshare.30619088.v1
title: Impact of wetland degradation on microbial diversity

description: How peatland degradation reshapes soil processes and ecosystem functions.
DOI: 10.13018/bmr30208
title: Solution structure of the zinc fingers 3 and 4 of MBNL1
DOI: 10.13018/bmr30209
title: NMR structure of the precursor protein PawS1 comprising SFTI-1 and a seed storage albumin
DOI: 10.13018/bmr30210
title: Solution structure of the zinc fingers 1 and 2 of MBNL1 in complex with human cardiac troponin T pre-mRNA
DOI: 10.13018/bmr30211
title: Ocellatin-LB1
DOI: 10.13018/bmr30212
title: Ocellatin-LB2, solution structure in TFE by NMR spectroscopy
DOI: 10.13018/bmr30213
title: Ocellatin-F1, solution structure in TFE by NMR spectroscopy
DOI: 10.13018/bmr30214
title: Ocellatin-LB1, solution structure in DPC micelle by NMR spectroscopy
DOI: 10.13018/bmr30215
title: Ocellatin-LB2
DOI: 10.13018/bmr30216
title: Ocellatin-F1
DOI: 10.5281/zenodo.17144173
title: Deregulations of DNA damage-responsive genes, genes involved in the endocrine system, in an advanced in vitro 3D zebrafish hepatic cell model after exposure to Bisphenol A (BPA) and its emerging alternatives BPAF, BPAP and BPPH.

description: Bisphenol AF (BPAF), Bisphenol AP (BPAP), and Bisphenol PH (BPPH) are being introduced into consumer products to replace BPA and are subsequently detected in ecosystems. This study investigates the genotoxic and endocrine-disruptive potential of these emerging bisphenols using a 3D in vitro liver spheroid model derived from Danio rerio (ZFL cell line), on the transcriptional level. The selected genes targeted DNA damage response pathways (TP53, NER, BER) and endocrine-related signalling (Table 1).

 

ZFL spheroids were prepared by a force floating method as described by Štampar et al. (2019)1. Four-day-old ZFL spheroids were exposed to BPA (50 and 200 µM), BPAF (25 and 100 µM), BPAP (25 and 100 µM), and BPPH (10 and 50 µM) for 24 (Table 2) and 96 (Table 3) hours. Following exposure, total RNA was extracted using the RNeasy® Mini Kit (Qiagen, Germany). RNA quality and quantity were assessed prior to reverse transcription (Applied Biosystems, USA), followed by gene-specific preamplification (TATAA PreAmp GrandMasterMix, Tataa Biocenter, Sweden). Gene expression analysis was performed using TaqMan Gene Expression Assays (Applied Biosystems, USA) on the Fluidigm One 48.48 Dynamic Array IFC microfluidic system as described by Štern et al. (2024)2.

 

The generated data was analysed using the Fluidigm Gene Expression Analysis Software and with a free-accessible web program, quantGenious3. The difference in gene expression greater than 1.5-fold was considered a biologically important up/downregulation (relative expression >1.5 or <0.66, respectively). Statistically significant differences were analysed using ANOVA and Dunnett’s multiple comparison test in GraphPad Prism v9 (GraphPad Software, San Diego, CA, USA).
DOI: 10.5281/zenodo.17144174
title: Deregulations of DNA damage-responsive genes, genes involved in the endocrine system, in an advanced in vitro 3D zebrafish hepatic cell model after exposure to Bisphenol A (BPA) and its emerging alternatives BPAF, BPAP and BPPH.

description: Bisphenol AF (BPAF), Bisphenol AP (BPAP), and Bisphenol PH (BPPH) are being introduced into consumer products to replace BPA and are subsequently detected in ecosystems. This study investigates the genotoxic and endocrine-disruptive potential of these emerging bisphenols using a 3D in vitro liver spheroid model derived from Danio rerio (ZFL cell line), on the transcriptional level. The selected genes targeted DNA damage response pathways (TP53, NER, BER) and endocrine-related signalling (Table 1).

 

ZFL spheroids were prepared by a force floating method as described by Štampar et al. (2019)1. Four-day-old ZFL spheroids were exposed to BPA (50 and 200 µM), BPAF (25 and 100 µM), BPAP (25 and 100 µM), and BPPH (10 and 50 µM) for 24 (Table 2) and 96 (Table 3) hours. Following exposure, total RNA was extracted using the RNeasy® Mini Kit (Qiagen, Germany). RNA quality and quantity were assessed prior to reverse transcription (Applied Biosystems, USA), followed by gene-specific preamplification (TATAA PreAmp GrandMasterMix, Tataa Biocenter, Sweden). Gene expression analysis was performed using TaqMan Gene Expression Assays (Applied Biosystems, USA) on the Fluidigm One 48.48 Dynamic Array IFC microfluidic system as described by Štern et al. (2024)2.

 

The generated data was analysed using the Fluidigm Gene Expression Analysis Software and with a free-accessible web program, quantGenious3. The difference in gene expression greater than 1.5-fold was considered a biologically important up/downregulation (relative expression >1.5 or <0.66, respectively). Statistically significant differences were analysed using ANOVA and Dunnett’s multiple comparison test in GraphPad Prism v9 (GraphPad Software, San Diego, CA, USA).
DOI: 10.13018/bmr30217
title: Ocellatin-LB1, solution structure in SDS micelle by NMR spectroscopy
DOI: 10.6084/m9.figshare.31146256
title: data

description: Research on Commuting Willingness for the Loop Line Railway.
DOI: 10.13018/bmr30218
title: Ocellatin-LB2, solution structure in SDS micelle by NMR spectroscopy
DOI: 10.6084/m9.figshare.31146256.v1
title: data

description: Research on Commuting Willingness for the Loop Line Railway.
DOI: 10.13018/bmr30219
title: Ocellatin-F1, solution structure in SDS micelle by NMR spectroscopy
DOI: 10.15468/dl.jubmwx
title: Occurrence Download

description: A dataset containing 167646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Specimen)",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Columba palumbus"
 ]
}

 The dataset includes 167646 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003389-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr30220
title: Solution NMR Structure of NERD-C, a natively folded tetramutant of the B1 domain of streptococcal protein G (GB1)
DOI: 10.13018/bmr30221
title: Solution NMR Structure of NERD-S, a natively folded pentamutant of the B1 domain of streptococcal protein G (GB1) with a solvent-exposed Trp43
DOI: 10.13018/bmr30222
title: Solution NMR structure of the major species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1)
DOI: 10.13018/bmr30223
title: Solution NMR-derived model of the minor species of DANCER-2, a dynamic and natively folded pentamutant of the B1 domain of streptococcal protein G (GB1)
DOI: 10.13018/bmr30224
title: Structure Effects of the Four-Adenine Loop of the Coliphage GA Replicase RNA Operator
DOI: 10.13018/bmr30225
title: NMR SOLUTION STRUCTURE OF ALPHA-CONOTOXIN GID MUTANT A10V
DOI: 10.13018/bmr30226
title: NMR SOLUTION STRUCTURE OF THE ALPHA-CONOTOXIN GID MUTANT V13Y
DOI: 10.15468/dl.9vpyhe
title: Occurrence Download

description: A dataset containing 255297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Holcus lanatus",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 255297 records from 434 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003463-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.24015.28329
title: Ensino da leitura no 1º Ciclo do Ensino Básico
DOI: 10.15468/dl.3xeueq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Caudofoveata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-180 -10,-170 -10,-170 0,-180 0,-180 -10))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025533-251009101135966/datasets/export for details.
DOI: 10.15468/dl.xmhjed
title: Occurrence Download

description: A dataset containing 2377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus saxatilis"
 ]
}

 The dataset includes 2377 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025527-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfqhh5
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bivalvia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((0 20,10 20,10 30,0 30,0 20))"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025532-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.13089.20328
title: MHMORIYASU Dissertation .Implementation of the AACE.ADA ...
DOI: 10.15468/dl.hcyprj
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023968-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9ungc
title: Occurrence Download

description: A dataset containing 99425094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.58398 28.92163,-86.39648 39.77477,-105.9082 37.57941,-109.59961 31.05293,-106.96289 25.79989,-94.13086 24.20689,-83.58398 28.92163))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 99425094 records from 1513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0317220-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5aagdt
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008713-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehhjb4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042041-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9g2nq
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bryopsis muscosa J.V.Lamouroux"
 ]
}

 The dataset includes 34 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260197-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acoaou
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008725-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pflcwj
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053779-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gcwzig
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042196-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyhbyr
title: Occurrence Download

description: A dataset containing 1382764672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1382764672 records from 11781 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261079-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t989rj
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barleria prionitis",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086315-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m49ecb
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((42.2714 34.48077,59.00683 34.48077,59.00683 46.16672,42.2714 46.16672,42.2714 34.48077))",
 "TaxonKey is Acer velutinum Boiss."
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066472-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgtgjr
title: Occurrence Download

description: A dataset containing 639494092 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 639494092 records from 13332 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015241-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/vcjeqi/bqstik
title: PW_2015_2016_clean.tab

description: Data with raw variables
DOI: 10.25625/vcjeqi/9zegrt
title: 02_PW_descriptives.do

description: Stata code creating tables with descriptive statistics
DOI: 10.25625/vcjeqi/bk7yzd
title: GV_PW_analysis.tab

description: Data with cleaned variables for analysis
DOI: 10.25625/vcjeqi/oex9gf
title: 01_PW_variables.do

description: Stata code creating analysis variables
DOI: 10.25625/vcjeqi/xx6w3g
title: 03_PW_analysis_reg.do

description: Stata code creating results table
DOI: 10.5281/zenodo.17570571
title: Laboratory notebook of Noelia Joya

description: Experiments on the membrane permeability of Vip3Aa to membranes
DOI: 10.25625/vcjeqi/p4wjvn
title: PW_baseline_characteristics.tab

description: Data with baseline characteristics
DOI: 10.34740/kaggle/dsv/13678475
title: Sports Training
DOI: 10.5281/zenodo.17570570
title: Laboratory notebook of Noelia Joya

description: Experiments on the membrane permeability of Vip3Aa to membranes
DOI: 10.25625/vcjeqi
title: Replication Data for: Effects of a large-scale participatory learning and action programme in women’s groups on knowledge and behaviour related to pregnancy and childcare: a cluster-randomized controlled trial in Bihar, India

description: This dataset contains replication files for the peer-reviewed journal article "Effects of a large-scale participatory learning and action programme in women’s groups on knowledge and behaviour related to pregnancy- and childcare: a cluster-randomized controlled trial in Bihar, India". The dataset includes raw data, analysis data, and code files to replicate the analysis on the level of individual women.
DOI: 10.25625/vcjeqi/5rtre1
title: Variables_PW_rep.tab

description: List of variables used in analysis, needed to run Stata code "03_PW_analysis_reg.do"
DOI: 10.15468/dl.g4f4cd
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (China, Chinese Taipei)",
 "OccurrenceStatus is Present",
 "TaxonKey is Coelacanthi"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024731-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17426655
title: pop-cosmos: Galaxy property and redshift catalog for COSMOS2020

description: This record (v≥2.0.0) contains data products associated with the paper "pop-cosmos: Insights from generative modeling of a deep, infrared-selected galaxy population" by Thorp et al. (2025). Earlier versions of this record (v<2.0.0) contain data products associated with the paper "pop-cosmos: Scaleable inference of galaxy properties and redshifts with a data-driven population model" by Thorp et al. (2024), which are superseded by the contents of v2.0.0. In v≥2.0.0, we include results for all COSMOS2020 galaxies with $\textit{Ch.1}<26$ or $r<25$.

The included products are derived from spectral energy distribution (SED) fits to 26-band COSMOS2020 photometry, using the 16-parameter SPS model described in Thorp et al. (2024, 2025), and the pop-cosmos prior from Thorp et al. (2025). All results are based on Markov Chain Monte Carlo (MCMC) runs using the configuration described in Thorp et al. (2024, 2025). Results correspond to v2.1 of the COSMOS2020 catalog.

The current release includes the following files:



README_v2_2_0.txt: Detailed information about how to read the other files in the record.

mcmc_summaries.h5.gz: Zipped HDF5 file with summaries (percentiles) of the posteriors.

mcmc_samples_pop_cosmos.h5.gz: Zipped HDF5 file with posterior samples (using pop-cosmos prior).

mcmc_samples_Prospector.h5.gz: Zipped HDF5 file with posterior samples (using Prospector-$\alpha$ prior).


If you make use of any of these products, please cite this repository and Thorp et al. (2024, 2025). Please also cite the pop-cosmos overview paper by Alsing et al. (2024), and the paper by Deger et al. (2025). If you make use of any COSMOS data products, please cite Weaver et al. (2022) and any other relevant publications. If you make use of COSMOS spectroscopic data, please cite Khostovan et al. (2025) and references therein.

If you spot any issues or have any requests, please contact the corresponding author (Stephen Thorp) using the details in the README.

If you want to access pop-cosmos mock galaxy catalogs, these can be found on Zenodo.

Related software, including a demo notebook for working with the data in this record, can be found on GitHub. 

References:



Alsing et al. (2024). ApJS 274, 12. [arXiv:2402.00935][doi]

Deger et al. (2025). MNRAS, submitted. [arXiv:2509.20430]

Khostovan et al. (2025). ApJ, submitted. [arXiv:2503.00120]

Thorp et al. (2024). ApJ 975, 145. [arXiv:2406.19437][doi]

Thorp et al. (2025). ApJ, 993, 240. [arXiv:2506.12122][doi]

Weaver et al. (2022). ApJS 258, 11. [arXiv:2110.13923][doi]