cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.n253zn
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panicum maximum",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049783-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eskx4a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Benthophilus casachicus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049785-250827131500795/datasets/export for details.
DOI: 10.25574/27533
title: Chandra X-ray Observatory ObsId 27533

description: Measuring nuclear activity and extended emission in a strongly-lensed, super-starburst galaxy at z~2
DOI: 10.15468/dl.pr8y4h
title: Occurrence Download

description: A dataset containing 449559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "Geometry POLYGON ((-71.378143 -12.723220, -71.557442 -12.814709, -71.412269 -12.979088, -71.273513 -12.860435, -71.378143 -12.723220 ))",
 "Year is greater than or equal to 1990",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 449559 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049689-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2p5fg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa chinensis",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049786-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nadbua
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa chinensis",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049787-250827131500795/datasets/export for details.
DOI: 10.5281/zenodo.17093251
title: Optimization of Protein Extraction from Duckweed Using Different Extraction Processes - peptide analyses raw data

description: Despite its recent commercialization of duckweed, the extraction of high-quality protein presents challenges primarily in the efficiency of the extraction processes. In this study, conventional, ultrasound-assisted extraction (UAE), and ultrafiltration (UF) extraction techniques, were evaluated showing significant enhancements in protein yield, amino acid profile, and chlorophyll extraction. The highest protein release of 80.83% was achieved with a 40% amplitude applied for 10 min. UAE increased the protein yield substantially compared to conventional methods, achieving the highest yield of 41.30% with a moderate protein content of 50.91% in Lemna gibba protein concentrate. However, it comes at the cost of reduced protein purity and altered protein profiles due to co-extraction of other plant components. SDS-PAGE analysis revealed that ultrasound methods improved the extraction of chlorophyll-binding proteins (LHCB1) but decreased the efficiency of extracting RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) subunits compared to non-ultrasound methods. Lysine and tryptophan were identified as limiting essential amino acids (EAA), except when ultrasound methods were applied, which raised the levels partially above the recommended amino acid score (AAS) threshold of 1 for adults. The study established a nitrogen-to-protein conversion factor for duckweed at ~ 5.8, aligning with RuBisCO-based calculations and providing a more accurate tool for future nutritional assessments of duckweed proteins.
DOI: 10.5281/zenodo.17093252
title: Optimization of Protein Extraction from Duckweed Using Different Extraction Processes - peptide analyses raw data

description: Despite its recent commercialization of duckweed, the extraction of high-quality protein presents challenges primarily in the efficiency of the extraction processes. In this study, conventional, ultrasound-assisted extraction (UAE), and ultrafiltration (UF) extraction techniques, were evaluated showing significant enhancements in protein yield, amino acid profile, and chlorophyll extraction. The highest protein release of 80.83% was achieved with a 40% amplitude applied for 10 min. UAE increased the protein yield substantially compared to conventional methods, achieving the highest yield of 41.30% with a moderate protein content of 50.91% in Lemna gibba protein concentrate. However, it comes at the cost of reduced protein purity and altered protein profiles due to co-extraction of other plant components. SDS-PAGE analysis revealed that ultrasound methods improved the extraction of chlorophyll-binding proteins (LHCB1) but decreased the efficiency of extracting RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) subunits compared to non-ultrasound methods. Lysine and tryptophan were identified as limiting essential amino acids (EAA), except when ultrasound methods were applied, which raised the levels partially above the recommended amino acid score (AAS) threshold of 1 for adults. The study established a nitrogen-to-protein conversion factor for duckweed at ~ 5.8, aligning with RuBisCO-based calculations and providing a more accurate tool for future nutritional assessments of duckweed proteins.
DOI: 10.15468/dl.4pr7ap
title: Occurrence Download

description: A dataset listing the 101 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-37.77338 -9.62652,-37.75068 -9.62652,-37.75068 -9.60811,-37.77338 -9.60811,-37.77338 -9.62652))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 101 records were derived from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049768-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxqu7x
title: Occurrence Download

description: A dataset containing 526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Cavendishia capitulata"
 ]
}

 The dataset includes 526 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049789-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74vupj
title: Occurrence Download

description: A dataset containing 4290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chromolaena odorata)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Specimen, Unknown evidence, Machine Observation, Occurrence evidence)",
 "Year is greater than or equal to 2023",
 "Year is less than or equal to 2024",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4290 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049790-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c7f8f
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa chinensis",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049791-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fd4j62
title: Occurrence Download

description: A dataset containing 23279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Australia)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1910",
 "Year is less than or equal to 1910"
 ]
}

 The dataset includes 23279 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049759-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p98p1vv6
title: High-resolution spatial water-quality and discrete phytoplankton data, Owasco Lake, Seneca Lake, and Skaneateles Lake, Finger Lakes Region, New York, 2018-2019

description: From August 2018 to October 2019, the U.S. Geological Survey collected spatially high-resolution water quality data as part of five shoreline synoptic surveys around the perimeters of Owasco, Seneca, and Skaneateles Lakes within the Finger Lakes Region of New York. Water-quality data were collected just below water surface utilizing YSI EXO2 multiparameter sondes and portable nitrate sensors paired with real-time GPS data as part of a HABs monitoring program in the Finger Lakes. In October 2019, water-quality data collection was paired with discrete phytoplankton grab samples on Owasco Lake and Seneca Lake. Phytoplankton grab samples were collected just below water surface with a peristaltic pump at twelve locations on each lake.
DOI: 10.15468/dl.cebz4y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tetracamphilius clandestinus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049793-250827131500795/datasets/export for details.
DOI: 10.15468/dl.eh4jpj
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.28.33_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 116 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049795-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adejuk
title: Occurrence Download

description: A dataset containing 758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Cavendishia complectens"
 ]
}

 The dataset includes 758 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049796-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17093526
title: CAZymes in animal gut microbial MAGs: distribution and novel enzyme reservoir

description: The gut microbiota of animals contains a vast reservoir of CAZymes. A thorough understanding of the CAZymes encoded by the gut microbiota of different animals is significant for deciphering various animal strategies for handling carbohydrates and for discovering novel, highly efficient CAZymes. Here, we collected 100,090 MAGs from humans and 10 types of animals, and annotated 8,747,365 known CAZymes. These CAZymes cover 613 carbohydrate enzyme families, accounting for 70.5% of the known total. Furthermore, we found that the Bacteroides genus encodes the largest number CAZymes. We annotated the PULs of the Bacteroides genus and identified a total of 185,715 potential novel CAZymes encoded by these PULs, which represents the largest potential novel carbohydrate enzyme library to date. To verify the reliability of this carbohydrate enzyme library, we selected Vatanent_2016_SRR4408032_bin.1, which encodes the greatest greatest number of PULs. We then identified the protein BfLac15, which has the lowest similarity to known CAZymes. Molecular docking prediction suggests that BfLac15 may be a novel multifunctional carbohydrate enzyme. Then, BfLac15 was obtained using the prokaryotic expression technology, and its ability to hydrolytic various substrates was determined. This confirmed that BfLac15 is a novel multifunctional carbohydrate enzyme and verified the reliability of the carbohydrate enzyme library. This study provides valuable resources for CAZymes applications and offers ideas for the mining and applying of massive data in the rapidly developing era of metagenomics.
DOI: 10.5281/zenodo.17093527
title: CAZymes in animal gut microbial MAGs: distribution and novel enzyme reservoir

description: The gut microbiota of animals contains a vast reservoir of CAZymes. A thorough understanding of the CAZymes encoded by the gut microbiota of different animals is significant for deciphering various animal strategies for handling carbohydrates and for discovering novel, highly efficient CAZymes. Here, we collected 100,090 MAGs from humans and 10 types of animals, and annotated 8,747,365 known CAZymes. These CAZymes cover 613 carbohydrate enzyme families, accounting for 70.5% of the known total. Furthermore, we found that the Bacteroides genus encodes the largest number CAZymes. We annotated the PULs of the Bacteroides genus and identified a total of 185,715 potential novel CAZymes encoded by these PULs, which represents the largest potential novel carbohydrate enzyme library to date. To verify the reliability of this carbohydrate enzyme library, we selected Vatanent_2016_SRR4408032_bin.1, which encodes the greatest greatest number of PULs. We then identified the protein BfLac15, which has the lowest similarity to known CAZymes. Molecular docking prediction suggests that BfLac15 may be a novel multifunctional carbohydrate enzyme. Then, BfLac15 was obtained using the prokaryotic expression technology, and its ability to hydrolytic various substrates was determined. This confirmed that BfLac15 is a novel multifunctional carbohydrate enzyme and verified the reliability of the carbohydrate enzyme library. This study provides valuable resources for CAZymes applications and offers ideas for the mining and applying of massive data in the rapidly developing era of metagenomics.
DOI: 10.13011/m3-n63j-gq25
title: FOXDEN dataset /beamline=3a/btr=test-123-a/cycle=2025-3/sample_name=test-101/user=vek3:20250910_105139
DOI: 10.15468/dl.t9wfdx
title: Occurrence Download

description: A dataset containing 7306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Champsocephalus gunnari",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Geometry POLYGON((180 -44.3,173 -44.3,173 -47.5,170 -47.5,157 -47.5,157 -45.9,150 -45.9,150 -47.5,143 -47.5,143 -45.8,140 -45.8,140 -44.5,137 -44.5,137 -43,135 -43,135 -41.7,131 -41.7,131 -40.1,115 -40.1,92 -40.1,92 -41.4,78 -41.4,78 -42.3,69 -42.3,69 -43.3,47 -43.3,47 -41.7,30 -41.7,12 -41.7,12 -40.3,10 -40.3,10 -38.3,-5 -38.3,-5 -38.9,-9 -38.9,-9 -40.2,-13 -40.2,-13 -41.4,-21 -41.4,-21 -42.5,-39 -42.5,-39 -40.7,-49 -40.7,-49 -48.6,-54 -48.6,-54 -55.7,-62.7972582608082 -55.7,-64 -55.7,-64 -57.8,-71 -57.8,-71 -58.9,-80 -58.9,-80 -40,-125 -40,-167 -40,-167 -42.6,-171 -42.6,-171 -44.3,-180 -44.3,-180 -90, 0 -90,180 -90,180 -44.3))"
 ]
}

 The dataset includes 7306 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049797-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7a9pm
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa gallica",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049798-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xt28t
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa gallica",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049800-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayts4q
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa gallica",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049802-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15387411
title: Nucleotide asymmetry and flexible linker dynamics orchestrate drug efflux cycle of P-glycoprotein; a computational study

description: This dataset contains coordinate files and input parameters to run and analyse molecular dynamics simulations of membrane bound P-glycoprotein.

 

The associated study is described in: 

input_MD_{system}.zip - containes input data for all of the described MD simulations 

CAVER.zip - contains output data from CAVER analysis described in the manuscript

output_MD_{system}.zip - contains .pdb files of all last frame coordinates of MD simulations described in the manuscript
DOI: 10.5281/zenodo.15479648
title: Nucleotide asymmetry and flexible linker dynamics orchestrate drug efflux cycle of P-glycoprotein; a computational study

description: This dataset contains coordinate files and input parameters to run and analyse molecular dynamics simulations of membrane bound P-glycoprotein.

 

The associated study is described in: 

input_MD_{system}.zip - containes input data for all of the described MD simulations 

CAVER.zip - contains output data from CAVER analysis described in the manuscript

output_MD_{system}.zip - contains .pdb files of all last frame coordinates of MD simulations described in the manuscript
DOI: 10.15468/dl.vctpav
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Cavendishia confertiflora"
 ]
}

 The dataset includes 120 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049803-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpd4c5
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Notothenia rossii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Geometry POLYGON((180 -44.3,173 -44.3,173 -47.5,170 -47.5,157 -47.5,157 -45.9,150 -45.9,150 -47.5,143 -47.5,143 -45.8,140 -45.8,140 -44.5,137 -44.5,137 -43,135 -43,135 -41.7,131 -41.7,131 -40.1,115 -40.1,92 -40.1,92 -41.4,78 -41.4,78 -42.3,69 -42.3,69 -43.3,47 -43.3,47 -41.7,30 -41.7,12 -41.7,12 -40.3,10 -40.3,10 -38.3,-5 -38.3,-5 -38.9,-9 -38.9,-9 -40.2,-13 -40.2,-13 -41.4,-21 -41.4,-21 -42.5,-39 -42.5,-39 -40.7,-49 -40.7,-49 -48.6,-54 -48.6,-54 -55.7,-62.7972582608082 -55.7,-64 -55.7,-64 -57.8,-71 -57.8,-71 -58.9,-80 -58.9,-80 -40,-125 -40,-167 -40,-167 -42.6,-171 -42.6,-171 -44.3,-180 -44.3,-180 -90, 0 -90,180 -90,180 -44.3))"
 ]
}

 The dataset includes 354 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049804-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13011/m3-e07s-zc94
title: FOXDEN dataset /beamline=3a/btr=test-123-a/cycle=2024-1/sample_name=test_sample
DOI: 10.15468/dl.cfegcb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acrochordonichthys strigosus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049808-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fukkc
title: Occurrence Download

description: A dataset containing 4340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa gallica",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4340 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049805-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt5dk6
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa gallica",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049806-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6z32w8
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Centropogon costaricae"
 ]
}

 The dataset includes 331 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049807-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.