cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6736139.v1
title: Automatic Test Smell Detection using Information Retrieval Techniques

description: Software testing is a key activity to control the reliability of production code. Unfortunately, the effectiveness of test cases can be threatened by the presence of faults. Recent work showed that static indicators can be exploited to identify test-related issues. In particular test smells, i.e., sub-optimal design choices applied by developers when implementing test cases, have been shown to be related to test case effectiveness. While some approaches for the automatic detection of test smells have been proposed so far, they generally suffer of poor performance: as a consequence, current detectors cannot properly provide support to developers when diagnosing the quality of test cases. In this paper, we aim at making a step ahead toward the automated detection of test smells by devising a novel textual-based detector, coined TASTE (Textual AnalySis for Test smEll detection), with the aim of evaluating the usefulness of textual analysis for detecting three test smell types, General Fixture, Eager Test, and Lack of Cohesion of Methods. We evaluate TASTE in an empirical study that involves a manually-built dataset composed of 494 test smell instances belonging to 12 software projects, comparing the capabilities of our detector with those of two code metrics-based techniques proposed by Van Rompaey et al. and Greiler et al.Our results show that the structural-based detection applied by existing approaches cannot identify most of the test smells in our dataset, while TASTE is up to 44% more effective. Finally, we find that textual and structural approaches can identify different sets of test smells, thereby indicating complementarity.
DOI: 10.6084/m9.figshare.6736115
title: Ergosterol and its derivatives from <i>Grifola frondosa</i> inhibit antigen-induced degranulation of RBL-2H3 cells by suppressing the aggregation of high affinity IgE receptors

description: <i>Grifola frondosa</i> is an edible mushroom consumed as a health food and/or traditional medicine in Asia. However, the anti-allergic effects of <i>G. frondosa</i> are not yet understood. In this study, we demonstrated the effects of <i>G. frondosa</i> extract (GFE) on IgE-mediated allergic responses, using antigen-stimulated RBL-2H3 cells. Three active compounds: ergosterol, 6β-methoxyergosta-7,22-dien-3β,5α-diol (MEDD), and 6-oxoergosta-7,22-dien-3β-ol (6-OXO) were isolated from GFE and shown to inhibit the antigen-induced release of β-hexosaminidase and histamine. Among the three active components, we focused on ergosterol because of its high content in GFE. Ergosterol inhibited the aggregation of high-affinity IgE receptor (FcεRI), which is the first step in the activation of mast cells and antigen-induced tyrosine phosphorylation. Furthermore, ergosterol suppressed antigen-increased IL-4 and TNF-α mRNA. Taken together, our findings suggest that <i>G. frondosa</i>, including ergosterol and its derivatives as active components, has the potential to be a novel functional food that prevents type I allergies.
DOI: 10.6084/m9.figshare.6736115.v1
title: Ergosterol and its derivatives from <i>Grifola frondosa</i> inhibit antigen-induced degranulation of RBL-2H3 cells by suppressing the aggregation of high affinity IgE receptors

description: <i>Grifola frondosa</i> is an edible mushroom consumed as a health food and/or traditional medicine in Asia. However, the anti-allergic effects of <i>G. frondosa</i> are not yet understood. In this study, we demonstrated the effects of <i>G. frondosa</i> extract (GFE) on IgE-mediated allergic responses, using antigen-stimulated RBL-2H3 cells. Three active compounds: ergosterol, 6β-methoxyergosta-7,22-dien-3β,5α-diol (MEDD), and 6-oxoergosta-7,22-dien-3β-ol (6-OXO) were isolated from GFE and shown to inhibit the antigen-induced release of β-hexosaminidase and histamine. Among the three active components, we focused on ergosterol because of its high content in GFE. Ergosterol inhibited the aggregation of high-affinity IgE receptor (FcεRI), which is the first step in the activation of mast cells and antigen-induced tyrosine phosphorylation. Furthermore, ergosterol suppressed antigen-increased IL-4 and TNF-α mRNA. Taken together, our findings suggest that <i>G. frondosa</i>, including ergosterol and its derivatives as active components, has the potential to be a novel functional food that prevents type I allergies.
DOI: 10.6084/m9.figshare.6736097
title: Supplementary Material for: Applying Regional Citrate Anticoagulation in Continuous Renal Replacement Therapy for Acute Kidney Injury Patients with Acute Liver Dysfunction: a Retrospective Observational Study

description: <b><i>Background/Aims:</i></b> Continuous renal replacement therapy (CRRT) is a treatment for acute kidney injury (AKI) patients. It has become a controversy about whether patients with liver dysfunction should perform CRRT with regional citrate anticoagulation (RCA). <b><i>Methods:</i></b> This retrospective observational study enrolled 145 AKI patients (275 CRRT sessions) who received CRRT with RCA and had no history of chronic liver disease. Circuit survival time, blood pressure, trans-membrane pressure (TMP), acid-base and electrolyte status were recorded and analyzed. The severity of liver dysfunction was determined by total bilirubin (TBil) and international normalized ratio (INR), while the accumulation degree of citrates was quantified by total/ ionized calcium (tCa/iCa) raito. <b><i>Results:</i></b> Our results showed that there was no correlation of tCa/iCa ratio with TBil or INR. And tCa/iCa ratio was not related to the disturbances of pH, lactates, sodium, magnesium, blood pressure or TMP despite that high tCa/iCa ratios might be related to the decrease of circuit survival time. TBil did not correlate with the above indexes, except for lactates levels. INR did not correlate with the above indexes except for lactates levels and blood pressure. In addition, neither was TBil, INR, nor tCa/iCa ratio, related with fatal outcomes (22.76% of the patients). <b><i>Conclusion:</i></b> The present study demonstrated that, with proper monitoring and adjustment of citrates and calcium infusion, applying RCA in CRRT is reasonably safe for AKI patients with acute liver dysfunction, as long as circuit time stays below roughly 50 hours.
DOI: 10.6084/m9.figshare.6736052
title: Supplemental Table 4. Single nucleotide polymorphisms (SNPs) with potential pleiotropic effects other than via the specific liver enzyme from Ensembl and from GWAS Catalog

description: Single nucleotide polymorphisms (SNPs) with potential pleiotropic effects other than via the specific liver enzyme from Ensembl and from GWAS Catalog
DOI: 10.6084/m9.figshare.6736097.v1
title: Supplementary Material for: Applying Regional Citrate Anticoagulation in Continuous Renal Replacement Therapy for Acute Kidney Injury Patients with Acute Liver Dysfunction: a Retrospective Observational Study

description: <b><i>Background/Aims:</i></b> Continuous renal replacement therapy (CRRT) is a treatment for acute kidney injury (AKI) patients. It has become a controversy about whether patients with liver dysfunction should perform CRRT with regional citrate anticoagulation (RCA). <b><i>Methods:</i></b> This retrospective observational study enrolled 145 AKI patients (275 CRRT sessions) who received CRRT with RCA and had no history of chronic liver disease. Circuit survival time, blood pressure, trans-membrane pressure (TMP), acid-base and electrolyte status were recorded and analyzed. The severity of liver dysfunction was determined by total bilirubin (TBil) and international normalized ratio (INR), while the accumulation degree of citrates was quantified by total/ ionized calcium (tCa/iCa) raito. <b><i>Results:</i></b> Our results showed that there was no correlation of tCa/iCa ratio with TBil or INR. And tCa/iCa ratio was not related to the disturbances of pH, lactates, sodium, magnesium, blood pressure or TMP despite that high tCa/iCa ratios might be related to the decrease of circuit survival time. TBil did not correlate with the above indexes, except for lactates levels. INR did not correlate with the above indexes except for lactates levels and blood pressure. In addition, neither was TBil, INR, nor tCa/iCa ratio, related with fatal outcomes (22.76% of the patients). <b><i>Conclusion:</i></b> The present study demonstrated that, with proper monitoring and adjustment of citrates and calcium infusion, applying RCA in CRRT is reasonably safe for AKI patients with acute liver dysfunction, as long as circuit time stays below roughly 50 hours.
DOI: 10.6084/m9.figshare.6736037
title: Supplemental Table 3. Characteristics of unequivocally aligned single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association study (GWAS)

description: Characteristics of unequivocally aligned single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association study (GWAS)
DOI: 10.6084/m9.figshare.6736052.v1
title: Supplemental Table 4. Single nucleotide polymorphisms (SNPs) with potential pleiotropic effects other than via the specific liver enzyme from Ensembl and from GWAS Catalog

description: Single nucleotide polymorphisms (SNPs) with potential pleiotropic effects other than via the specific liver enzyme from Ensembl and from GWAS Catalog
DOI: 10.6084/m9.figshare.6736031
title: Supplemental Table 2. Characteristics of palindromic single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association studies (GWAS)

description: Characteristics of palindromic single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association studies (GWAS)
DOI: 10.6084/m9.figshare.6736031.v1
title: Supplemental Table 2. Characteristics of palindromic single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association studies (GWAS)

description: Characteristics of palindromic single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association studies (GWAS)
DOI: 10.6084/m9.figshare.6736037.v1
title: Supplemental Table 3. Characteristics of unequivocally aligned single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association study (GWAS)

description: Characteristics of unequivocally aligned single nucleotide polymorphisms (SNPs) in the exposure and outcome genome-wide association study (GWAS)
DOI: 10.6084/m9.figshare.6736025
title: 13_Barnett_PLOS1_data_Dryad.xlsx

description: DhekahaHaj hoknai
DOI: 10.6084/m9.figshare.6736025.v1
title: 13_Barnett_PLOS1_data_Dryad.xlsx

description: DhekahaHaj hoknai
DOI: 10.6084/m9.figshare.7704563
title: Plant presence/absence in suburban domestic gardens (Alt Empordà, Catalonia)

description: The dataset contains plant presence/absence data of 258 private domestic gardens in the Alt Empordà region in Catalonia (42.252; 3.118). Data is presented at the plot level. It also includes the cultivation status (i.e., cultivated or spontaneous) of each taxa. Data was collected in summer 2012.
DOI: 10.6084/m9.figshare.6735965.v1
title: Additional file 10: of Transcriptomics comparison reveals the diversity of ethylene and methyl-jasmonate in roles of TIA metabolism in Catharanthus roseus

description: Table S8. The FPKM value of 339 Candidate ABC Transporter Genes. (XLS 432Â kb). (XLS 432 kb)
DOI: 10.6084/m9.figshare.6735926
title: MOESM1 of A survey of studentsâ attitudes to implementing physical activity in Danish vocational education schools

description: Additional file 1. The full dataset.
DOI: 10.6084/m9.figshare.6735926.v1
title: MOESM1 of A survey of studentsâ attitudes to implementing physical activity in Danish vocational education schools

description: Additional file 1. The full dataset.
DOI: 10.6084/m9.figshare.6735911
title: datas.zip

description: <b>Datasets used in paper"</b><b>A multiobjective Community Detection algorithm in Signed Networks"</b>
DOI: 10.6084/m9.figshare.6735896
title: Sup_data_Wellused.docx

description: This data is used for this paper. Please cite whenever used.
DOI: 10.6084/m9.figshare.6735896.v1
title: Sup_data_Wellused.docx

description: This data is used for this paper. Please cite whenever used.
DOI: 10.6084/m9.figshare.6735260
title: Supplemental Table 1. Baseline characteristics of the participants who were included (n=3,458) and excluded (n=4,869) in the analyses of the Hong Kong’s “Children of 1997” birth cohort, Hong Kong, China, 1997 to 2016

description: Baseline characteristics of the participants who were included (n=3,458) and excluded (n=4,869) in the analyses of the Hong Kong’s “Children of 1997” birth cohort, Hong Kong, China, 1997 to 2016
DOI: 10.15131/shef.data.6735131
title: Computer code and simulated data of the study "Reconstructing ice-flow fields from streamlined subglacial bedforms: a kriging approach"

description: This ORDA archive contains the MATLAB code and data associated with the numerical method put forward in the following article:<br><br>Ng, F.S.L. and Hughes, A.L.C.(2018) Reconstructing ice-flow fields from streamlined subglacial bedforms: a kriging approach. <i>Earth Surface Processes and<br>Landforms</i>. doi: 10.1002/esp.4538.<br><br>The archive includes: <br>- MATLAB (.m) scripts of the kriging toolset described in Section 3 of the paper<br>- MATLAB (.m) scripts of specific commands used in the Tweed-Valley Case Study (Section 4) and MATLAB (.mat) files of the corresponding input data and computed output data.<br><br>See "README.txt" and the paper for more information.<br><br>License for the data files: CC BY 4.0.<br>License for the code: MIT open source license.<br><br>
DOI: 10.15131/shef.data.6735131.v1
title: Computer code and simulated data of the study "Reconstructing ice-flow fields from streamlined subglacial bedforms: a kriging approach"

description: This ORDA archive contains the MATLAB code and data associated with the numerical method put forward in the following article:<br><br>Ng, F.S.L. and Hughes, A.L.C.(2018) Reconstructing ice-flow fields from streamlined subglacial bedforms: a kriging approach. <i>Earth Surface Processes and<br>Landforms</i>. doi: 10.1002/esp.4538.<br><br>The archive includes: <br>- MATLAB (.m) scripts of the kriging toolset described in Section 3 of the paper<br>- MATLAB (.m) scripts of specific commands used in the Tweed-Valley Case Study (Section 4) and MATLAB (.mat) files of the corresponding input data and computed output data.<br><br>See "README.txt" and the paper for more information.<br><br>License for the data files: CC BY 4.0.<br>License for the code: MIT open source license.<br><br>
DOI: 10.6084/m9.figshare.6735260.v1
title: Supplemental Table 1. Baseline characteristics of the participants who were included (n=3,458) and excluded (n=4,869) in the analyses of the Hong Kong’s “Children of 1997” birth cohort, Hong Kong, China, 1997 to 2016

description: Baseline characteristics of the participants who were included (n=3,458) and excluded (n=4,869) in the analyses of the Hong Kong’s “Children of 1997” birth cohort, Hong Kong, China, 1997 to 2016
DOI: 10.6084/m9.figshare.6734969
title: Dataset for 'Introducing memory grading scale for semantic long-term retention using resting state EEG functional connectivity'

description: Semantic long-term memory (LTM) store and retain concepts, facts and knowledge of external world, which we have learned. This dataset consists of 68 healthy participants resting states EEG data recorded with 128 channels EGI machine with 250 samples per second and re-referenced using REST techniques, along with a supporting file of responses recorded during long-term memory tests (Recall 1 after 30 minutes retention, Recall 2 after 2 months renteion, Recall 3 after 4 months retention, Recall 4 after 6 months retention) and fluid intelligence (Ravan's Advanced Progressive Matrices) test. In addition, participants' age is recorded in years.
DOI: 10.6084/m9.figshare.6734939
title: Impact of rheological properties of substrate on anaerobic digestion and digestate dewaterability: New insights through rheological and physico-chemical interaction

description: This submission contains the raw rheometer files for rheological properties and data summary of physico-chemical properties tested during anaerobic digestion of waste activated sludge as well as statistical analysis results applied to develop the correlation between different properties.
DOI: 10.6084/m9.figshare.6734969.v1
title: Dataset for 'Introducing memory grading scale for semantic long-term retention using resting state EEG functional connectivity'

description: Semantic long-term memory (LTM) store and retain concepts, facts and knowledge of external world, which we have learned. This dataset consists of 68 healthy participants resting states EEG data recorded with 128 channels EGI machine with 250 samples per second and re-referenced using REST techniques, along with a supporting file of responses recorded during long-term memory tests (Recall 1 after 30 minutes retention, Recall 2 after 2 months renteion, Recall 3 after 4 months retention, Recall 4 after 6 months retention) and fluid intelligence (Ravan's Advanced Progressive Matrices) test. In addition, participants' age is recorded in years.
DOI: 10.6084/m9.figshare.6734939.v1
title: Impact of rheological properties of substrate on anaerobic digestion and digestate dewaterability: New insights through rheological and physico-chemical interaction

description: This submission contains the raw rheometer files for rheological properties and data summary of physico-chemical properties tested during anaerobic digestion of waste activated sludge as well as statistical analysis results applied to develop the correlation between different properties.
DOI: 10.6084/m9.figshare.6734915
title: sorted.bam.100.pre

description: bam for ensembl
DOI: 10.6084/m9.figshare.6734915.v1
title: sorted.bam.100.pre

description: bam for ensembl
DOI: 10.6084/m9.figshare.6734906
title: sorted_100_pre.bam

description: bam for ensembl
DOI: 10.6084/m9.figshare.6734828
title: Modular structure in fish co-occurrence networks - Code

description: Four files are included here. One is a combined R script to run all of the network and cluster analyses performed in McGarvey & Veech: <i>Modular structure in fish co-occurrence networks</i>. <br><br>The other three files are Microsoft Excel files with embedded Visual Basic for Applications functions to run the Congruence analyses.
DOI: 10.6084/m9.figshare.6734810
title: Modular structure in fish co-occurrence networks - Fish Data

description: These are the raw fish co-occurrence data used in McGarvey & Veech, <i>Modular structure in fish co-occurrence networks</i>.<br>Data are included for 10 nested river basins, distributed among three spatial scales (HU0, HU2, & HU4).<br>For each river basin, two files are included: (1) a presence-absence matrix of fish species collected at sampling sites (ending with "_FishData" labels); and (2) a file of species' range centroids (ending with "_FishData_XY" labels).<br>
DOI: 10.6084/m9.figshare.6734756
title: Time_PA

description: Dataset for positive affect and time perception
DOI: 10.6084/m9.figshare.6734756.v1
title: Time_PA

description: Dataset for positive affect and time perception
DOI: 10.6084/m9.figshare.6734660
title: High-intensity interval training and moderate-intensity continuous training in adolescents

description: Data from the article entitled "<b>Effects of high-intensity interval training and moderate-intensity continuous training on body adiposity and cardiorespiratory fitness in adolescents with central obesity"</b>
DOI: 10.6084/m9.figshare.6734660.v1
title: High-intensity interval training and moderate-intensity continuous training in adolescents

description: Data from the article entitled "<b>Effects of high-intensity interval training and moderate-intensity continuous training on body adiposity and cardiorespiratory fitness in adolescents with central obesity"</b>
DOI: 10.6084/m9.figshare.6734660.v2
title: High-intensity interval training and moderate-intensity continuous training in adolescents

description: Data from the article entitled "<b>Effects of high-intensity interval training and moderate-intensity continuous training on body adiposity and cardiorespiratory fitness in adolescents with central obesity"</b>
DOI: 10.6084/m9.figshare.6734612
title: Supplementary Table 1: Alignment of BEME Guides with the STORIES Statement

description: This is a supplemental Excel file that describes the alignment of all BEME Guides to the STORIES Statement.
DOI: 10.6084/m9.figshare.6734084
title: Supplement Figures and Tables

description: Supplementary Figures 1-6 and Supplementary Tables 1-5
DOI: 10.6084/m9.figshare.6731387
title: Satisfaction with access and quality of healthcare services for people with spinal cord injury living in the community

description: <b>Objective:</b> To identify barriers to access healthcare services and reveal determinants of satisfaction with healthcare services in people with chronic spinal cord injury (SCI). <b>Design:</b> Cross-sectional survey. <b>Setting</b>: Community setting in Switzerland. <b>Participants</b>: People with chronic SCI. <b>Interventions</b>: Non-applicable. <b>Outcome Measures</b>: Questionnaire-based evaluation of availability and quality of healthcare services for secondary health conditions, satisfaction with fulfillment of healthcare needs, and preference for care from a hypothetical service provider with limited specialized SCI care expertise but in close proximity over comprehensive care from an existing specialized SCI center located at a greater distance. <b>Results:</b> Close to three-quarter of participants (70%) indicated satisfaction with healthcare services received for SCI related health conditions. Elderly individuals (61+ years old) rated the availability and quality of healthcare 6% to 11% higher than younger individuals. The perceived fulfillment of healthcare needs was lower in people with incomplete paraplegia (odds ratio (OR) 2.11, 95%-credibility interval (CI) 1.18–3.84), chronic pain (OR 1.85, CI 1.12–3.08), insufficient access to long distance transportation (OR 5.81, CI 2.74–12.82), and longer travel distances to specialized SCI centers. <b>Conclusion:</b> Perceived inadequateness of access to healthcare services was partly related to transportation barriers, suggesting that outreach services or support with transportation are possible solutions. People with incomplete paralysis and pain consistently rated the fulfillment of care needs associated with SCI less favorably, pointing to the need for enhanced advocacy for this vulnerable groups.