cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14436893.v1
title: Additional file 2 of Transcriptomic and functional analysis of the Anopheles gambiae salivary gland in relation to blood feeding

description: Additional file 2: List of genes that are regulated upon blood-feeding in the female A. gambiae salivary gland, along with their ENSANGT and more recent AGAP-R transcript IDs. Transcripts lacking AGAP-R IDs are only indicated with the ENSANT transcript ID. Genes are only listed if they display significant differential regulation between fed and unfed mosquitoes, at a log2 fold ratio above or below the ± 0.75 threshold. Predicted functional groups classification for genes are also presented [CS: cytoskeletal and structural; CIR: circadian; CSR: chemosensory; PROT/DIG: proteolytic digestion; IMM: immunity; MET/ENZ: metabolism and enzymes; RED/STR: redox/stress; R/T/T: replication/transcription and translation; TRP: transport]. (XLS 31 KB)
DOI: 10.6084/m9.figshare.14436917.v4
title: Additional file of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

description: Additional file of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
DOI: 10.6084/m9.figshare.14436917.v6
title: Additional file of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

description: Additional file of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
DOI: 10.6084/m9.figshare.14436929
title: Additional file 2 of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

description: Additional file 2: XLS file containing the collated data from the 2D-DiGE multi-gel study, peptide sequence data and protein IDs produced by mass spectrometry, computational prediction of NMD activating features and QPCR based validation of changes in mRNA expression. (XLS 104 KB)
DOI: 10.6084/m9.figshare.14436935
title: Additional file 4 of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

description: Additional file 4: List of all the QPCR primer used in this study, including sequence and design source. (XLS 53 KB)
DOI: 10.6084/m9.figshare.14436935.v1
title: Additional file 4 of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

description: Additional file 4: List of all the QPCR primer used in this study, including sequence and design source. (XLS 53 KB)
DOI: 10.6084/m9.figshare.14436929.v1
title: Additional file 2 of Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay

description: Additional file 2: XLS file containing the collated data from the 2D-DiGE multi-gel study, peptide sequence data and protein IDs produced by mass spectrometry, computational prediction of NMD activating features and QPCR based validation of changes in mRNA expression. (XLS 104 KB)
DOI: 10.6084/m9.figshare.14436953.v1
title: Additional file of Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches

description: Additional file of Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
DOI: 10.17632/dx7gjkhnkj.2
title: Experimental results of UBST

description: This data set contains all experimental data obtained in a upflow baffled septic tank treating synthetic domestic wastewater operated under three different HRTs and configurations with anaerobic sludge and zeolite
DOI: 10.6084/m9.figshare.14436956
title: Additional file 1 of Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches

description: Additional file 1: BLASTx top-hit fish species. Top-hit from BLASTx search matching sequences from fish species (XLS 12 MB)
DOI: 10.6084/m9.figshare.14436956.v1
title: Additional file 1 of Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches

description: Additional file 1: BLASTx top-hit fish species. Top-hit from BLASTx search matching sequences from fish species (XLS 12 MB)
DOI: 10.17632/vyjxsprph9.1
title: HCQ referral practice

description: Survey responses and analysis examining screening practice for patients treated with hydroxychloroquine
DOI: 10.17632/b9fc88wp4x.1
title: Design of experiments in humanitarian logistics: Facility decision making in disaster preparedness

description: This is the experimental data from the article: Renata Turkes, Kenneth Sörensen, Daniel Palhazi Cuervo, Design of experiments in humanitarian logistics: Facility decision making in disaster preparedness. In the article, we focus on the problem of advance procurement and pre-positioning of emergency supplies at strategic locations in order to better prepare for a disaster. We carry out an extensive computational study to identify the instance characteristics (independent variables, factors) and their interactions that have the most significant influence on the facility decision making (dependant variable, response), and to gain an understanding of these effects. The experimental data consists of: - demand_graphs.zip, that contains the baseline information about different disasters, used to define the pre-positioning problem instances, - experimental_results.csv, that stores the response for each combination of factor levels, and - READ_ME.pdf, a detailed description of the data. The data can be used to replicate the study and/or gain a better understanding of the pre-positioning or related problems.
DOI: 10.6084/m9.figshare.14437058.v1
title: Additional file of Primary transcriptomes of Mycobacterium avium subsp. paratuberculosis reveal proprietary pathways in tissue and macrophages

description: Additional file of Primary transcriptomes of Mycobacterium avium subsp. paratuberculosis reveal proprietary pathways in tissue and macrophages
DOI: 10.6084/m9.figshare.14437061
title: Additional file 1 of Primary transcriptomes of Mycobacterium avium subsp. paratuberculosis reveal proprietary pathways in tissue and macrophages

description: Additional file 1: MAP identified genes in ileum, mesenteric lymph node and in vitro infected bovine macrophages. Fold changes, putative functions and regulation of MAP genes uniquely identified and shared in the ileum, mesenteric lymph node and in vitro infected bovine macrophages. Tables: S1-S9. S1: Ileum specific MAP genes. S2: Mesenteric lymph node specific MAP genes. S3: Ileum and Mesenteric lymph node shared MAP genes. S4: Macrophage specific MAP genes (6 and 48 hrs PI). S5: Macrophage specific MAP genes (6 and 120 hrs PI). S6: Macrophage specific MAP genes (48 and 120 hrs PI). S7: Common MAP genes between natural and in vitro infection. S8: Expression of MAP lineage specific LSPs in the tissues of naturally infected cattle. S9: Expression of MAP lineage specific LSPs in the in vitro infected macrophages. (XLS 120 KB)
DOI: 10.6084/m9.figshare.14437061.v1
title: Additional file 1 of Primary transcriptomes of Mycobacterium avium subsp. paratuberculosis reveal proprietary pathways in tissue and macrophages

description: Additional file 1: MAP identified genes in ileum, mesenteric lymph node and in vitro infected bovine macrophages. Fold changes, putative functions and regulation of MAP genes uniquely identified and shared in the ileum, mesenteric lymph node and in vitro infected bovine macrophages. Tables: S1-S9. S1: Ileum specific MAP genes. S2: Mesenteric lymph node specific MAP genes. S3: Ileum and Mesenteric lymph node shared MAP genes. S4: Macrophage specific MAP genes (6 and 48 hrs PI). S5: Macrophage specific MAP genes (6 and 120 hrs PI). S6: Macrophage specific MAP genes (48 and 120 hrs PI). S7: Common MAP genes between natural and in vitro infection. S8: Expression of MAP lineage specific LSPs in the tissues of naturally infected cattle. S9: Expression of MAP lineage specific LSPs in the in vitro infected macrophages. (XLS 120 KB)
DOI: 10.6084/m9.figshare.14437082.v5
title: Additional file of Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing

description: Additional file of Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing
DOI: 10.15468/v8xqyq
title: Pseudofeltria (Acariformes: Pionidae) In Europe: Three Previously Described Taxa, A Species New To Science From The Northern Apennines, And A Redefinition Of Foreliinae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gerecke, R. (2014): Pseudofeltria (Acariformes: Pionidae) In Europe: Three Previously Described Taxa, A Species New To Science From The Northern Apennines, And A Redefinition Of Foreliinae. Acarologia 54 (1): 57-67, DOI: 10.1051/acarologia/20142115, URL: http://dx.doi.org/10.1051/acarologia/20142115
DOI: 10.6084/m9.figshare.14437097.v1
title: Additional file 5 of Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing

description: Additional file 5: 454 reads for A. mellifera and D. rerio. this file contains the raw 454 FASTA reads in both model species for 2-, 5- and 8-probe enrichment sequences. (RAR 8 MB)
DOI: 10.6084/m9.figshare.14437097
title: Additional file 5 of Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing

description: Additional file 5: 454 reads for A. mellifera and D. rerio. this file contains the raw 454 FASTA reads in both model species for 2-, 5- and 8-probe enrichment sequences. (RAR 8 MB)
DOI: 10.6084/m9.figshare.14423474
title: File 4: Masked Cyc2 alignment file.

description: MUSCLE alignment file of all 1,593 sequences used in the Cyc2 phylogenetic tree. Positions with greater than 30% gaps were removed.
DOI: 10.6084/m9.figshare.14437169.v3
title: Additional file of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file of Genome-wide expression patterns in physiological cardiac hypertrophy
DOI: 10.6084/m9.figshare.14437169.v2
title: Additional file of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file of Genome-wide expression patterns in physiological cardiac hypertrophy
DOI: 10.6084/m9.figshare.14437169.v4
title: Additional file of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file of Genome-wide expression patterns in physiological cardiac hypertrophy
DOI: 10.6084/m9.figshare.14437175
title: Additional file 1 of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file 1: Table of Conserved network genes in physiological cardiac hypertrophy (sorted by node degree). (XLS 657 KB)
DOI: 10.6084/m9.figshare.14437178
title: Additional file 2 of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file 2: Gene edge list for the Conserved physiological cardiac hypertrophy network. (XLS 268 KB)
DOI: 10.6084/m9.figshare.14437178.v1
title: Additional file 2 of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file 2: Gene edge list for the Conserved physiological cardiac hypertrophy network. (XLS 268 KB)
DOI: 10.6084/m9.figshare.14437175.v1
title: Additional file 1 of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file 1: Table of Conserved network genes in physiological cardiac hypertrophy (sorted by node degree). (XLS 657 KB)
DOI: 10.6084/m9.figshare.14437181
title: Additional file 3 of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file 3: An edge list for 100532 pairwise sequence similarities covering 64550 unique homologues. (CSV 4 MB)
DOI: 10.6084/m9.figshare.14437181.v1
title: Additional file 3 of Genome-wide expression patterns in physiological cardiac hypertrophy

description: Additional file 3: An edge list for 100532 pairwise sequence similarities covering 64550 unique homologues. (CSV 4 MB)
DOI: 10.6084/m9.figshare.14423468
title: File 3: Full Cyc2 alignment file

description: MUSCLE alignment file of all 1,593 sequences used in the Cyc2 phylogenetic tree. All amino acid positions in this alignment have been preserved.
DOI: 10.6084/m9.figshare.14437220.v10
title: Additional file of Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

description: Additional file of Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence
DOI: 10.6084/m9.figshare.14437250
title: Additional file 8 of Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

description: Additional file 8: Presence of characteristic enzymes of the glycine synthase (Gcv proteins)/glycine reductase (Grd proteins) and Wood-Ljungdahl (CODH proteins) pathway in microbial genomes. Complete and WGS microbial genomes (as of May 6th, 2010) were scanned for some selected characteristic orthologous genes coding for carbon monoxide dehydrogenase/acetyl-CoA synthetase (Wood-Ljungdahl pathway), glycine reductase (Stickland reaction), and the glycine synthase (gcv-system) using a blastx search with stringent criteria (40% of positive residues over at least 80% of the length of the reference protein). For each target genome, the presence/absence of each protein was summarized in a 1/0 vector. Those WGS microbial genomes which do not contain all genes of both pathways are omitted. (XLS 18 KB)
DOI: 10.6084/m9.figshare.14437250.v1
title: Additional file 8 of Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

description: Additional file 8: Presence of characteristic enzymes of the glycine synthase (Gcv proteins)/glycine reductase (Grd proteins) and Wood-Ljungdahl (CODH proteins) pathway in microbial genomes. Complete and WGS microbial genomes (as of May 6th, 2010) were scanned for some selected characteristic orthologous genes coding for carbon monoxide dehydrogenase/acetyl-CoA synthetase (Wood-Ljungdahl pathway), glycine reductase (Stickland reaction), and the glycine synthase (gcv-system) using a blastx search with stringent criteria (40% of positive residues over at least 80% of the length of the reference protein). For each target genome, the presence/absence of each protein was summarized in a 1/0 vector. Those WGS microbial genomes which do not contain all genes of both pathways are omitted. (XLS 18 KB)
DOI: 10.6084/m9.figshare.14437259.v4
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14437259.v2
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14437259.v5
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14437259.v3
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14437259.v6
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14437259.v7
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14437259.v8
title: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
DOI: 10.6084/m9.figshare.14423435
title: File 1: Full-length Cyc2PV-1 sequences

description: Full-length nucleotide and amino acid sequence for Cyc2PV-1 expression construct used in purification.
DOI: 10.6084/m9.figshare.14437265
title: Additional file 1 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 1: Microsatellites in the BACE map. Linkage groups for males and females, marker names, primer sequences, GenBank accession numbers and annealing temperatures. (XLS 303 KB)
DOI: 10.6084/m9.figshare.14437268
title: Additional file 2 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 2: SNPs derived from ESTs in the BACE map. Linkage groups for males and females, SNPs ID, Blast top hit data, primer sequences, nucleotide-permutation sites of SNPs, SNP and flanking sequences. (XLS 126 KB)
DOI: 10.6084/m9.figshare.14437268.v1
title: Additional file 2 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 2: SNPs derived from ESTs in the BACE map. Linkage groups for males and females, SNPs ID, Blast top hit data, primer sequences, nucleotide-permutation sites of SNPs, SNP and flanking sequences. (XLS 126 KB)
DOI: 10.6084/m9.figshare.14437271
title: Additional file 3 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 3: Female genetic map data. Includes number of recombinant progenies, distance between markers and LOD scores. Numbered spreadsheets correspond to linkage group numbers. (XLS 131 KB)
DOI: 10.6084/m9.figshare.14437265.v1
title: Additional file 1 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 1: Microsatellites in the BACE map. Linkage groups for males and females, marker names, primer sequences, GenBank accession numbers and annealing temperatures. (XLS 303 KB)
DOI: 10.6084/m9.figshare.14437271.v1
title: Additional file 3 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 3: Female genetic map data. Includes number of recombinant progenies, distance between markers and LOD scores. Numbered spreadsheets correspond to linkage group numbers. (XLS 131 KB)
DOI: 10.6084/m9.figshare.14437277.v1
title: Additional file 5 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 5: MapChart data. Genetic map data, it can be used to recreate map figures. (MCT 37 KB)
DOI: 10.6084/m9.figshare.14437274
title: Additional file 4 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 4: Male genetic map data. Includes number of recombinant progenies, distance between markers and LOD scores. Numbered spreadsheets correspond to linkage group numbers. (XLS 140 KB)
DOI: 10.6084/m9.figshare.14437274.v1
title: Additional file 4 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 4: Male genetic map data. Includes number of recombinant progenies, distance between markers and LOD scores. Numbered spreadsheets correspond to linkage group numbers. (XLS 140 KB)
DOI: 10.6084/m9.figshare.14437277
title: Additional file 5 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 5: MapChart data. Genetic map data, it can be used to recreate map figures. (MCT 37 KB)
DOI: 10.6084/m9.figshare.14437280
title: Additional file 6 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 6: Annotation of SNPs in the BACE map against Tetradon and zebrafish, genomes. SNPs ID, linkage groups in Japanese flounder, hypothetical proteins and their map positions of Tetraodon and zebrafish. (XLS 38 KB)
DOI: 10.6084/m9.figshare.14437280.v1
title: Additional file 6 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 6: Annotation of SNPs in the BACE map against Tetradon and zebrafish, genomes. SNPs ID, linkage groups in Japanese flounder, hypothetical proteins and their map positions of Tetraodon and zebrafish. (XLS 38 KB)
DOI: 10.6084/m9.figshare.14437283
title: Additional file 7 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 7: Oxford plot comparing the linkage maps of Japanese flounder and Tetradon/zebrafish. The observed correspondences of SNP markers derived from ESTs of Japanese flounder are indicated. Numbers indicate the number of Japanese flounder markers with NCBI-BLASTX hits to particular Tetradon and zebrafish chromosomes. (XLS 30 KB)
DOI: 10.6084/m9.figshare.14437283.v1
title: Additional file 7 of A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

description: Additional file 7: Oxford plot comparing the linkage maps of Japanese flounder and Tetradon/zebrafish. The observed correspondences of SNP markers derived from ESTs of Japanese flounder are indicated. Numbers indicate the number of Japanese flounder markers with NCBI-BLASTX hits to particular Tetradon and zebrafish chromosomes. (XLS 30 KB)
DOI: 10.6084/m9.figshare.14437292.v1
title: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

description: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation
DOI: 10.6084/m9.figshare.14437292.v2
title: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

description: Additional file of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation
DOI: 10.6084/m9.figshare.14437295
title: Additional file 1 of Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

description: Additional file 1: Genes displaying significantly altered expression under zinc supplementation. An annotated list of genes called significantly regulated with more than 1.8-fold change, compared to control, and FDR = 0.1 (N = 4 or 5) at one or more time points between 8 hours and 14 days. The total number of samples analysed by microarray was 50. Annotation provided was determined by mapping the reporter sequences using megablast allowing 2 bp mismatches to Ensembl (Zv5), Refseq and Genebank. Genebank matches were used to retrieve the relevant Unigene Cluster ID and gene names (as provide in the table) and used to determine the associated human orthologues for which the unigene ID and gene symbol is also provided. The fold change in expression at each time point is also provided expressed relative to time match control. (XLS 130 KB)