cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e151081v1
title: Male Teacher Assignment and Teacher Turnover in Elementary School

description: Parents and educators commonly assume that male teachers serve as more effective disciplinarians for boys than female teachers. Do schools tend to assign male teachers to teach boys with perceived behavioral issues? Our study uses administrative data in Indiana to investigate male teacher assignment in elementary school. We find that boys with at least one suspension record in the previous year are 12% more likely to be assigned to a male teacher than boys without suspensions, whereas girls’ suspension histories do not predict assignments to male teachers. In addition, teachers who have 10% or more of students with suspension histories are 19.5% more likely to migrate to another school and 16.2% more likely to leave the state’s teacher workforce. Our study suggests that male teachers have an elevated risk of being assigned to teach male students with suspension histories, which may contribute to teacher turnover.
DOI: 10.5281/zenodo.5534717
title: Initial Evaluation Data for SimIMA: A Virtual Simulink Intelligent Modeling Assistant

description: The following is our initial dataset and evaluation materials corresponding to our development and evaluation of the Simulink Intelligent Modeling Assistant (SimIMA). We evaluate SimGestion and SimXample separately. The directory SimGestion-evaluation contains datasets, evaluation scripts, and log files involved in the evaluation of SimGestion. The directory SimXample-evaluation contains datasets, evaluation scripts, and log files involved in the evaluation of SimXample. This is v1.0, which is the evaluation associated with the thesis "INTELLIGENT SIMULINK MODELING ASSISTANCE VIA MODEL CLONES AND MACHINE LEARNING" by Bhisma Adhikari @ Miami University , 2021.
DOI: 10.5281/zenodo.5123564
title: Initial Evaluation Data for SimIMA: A Virtual Simulink Intelligent Modeling Assistant

description: The following is our initial dataset and evaluation materials corresponding to our development and evaluation of the Simulink Intelligent Modeling Assistant (SimIMA). We evaluate SimGestion and SimXample separately. The directory SimGestion-evaluation contains datasets, evaluation scripts, and log files involved in the evaluation of SimGestion. The directory SimXample-evaluation contains datasets, evaluation scripts, and log files involved in the evaluation of SimXample. This is v1.0, which is the evaluation associated with the thesis "INTELLIGENT SIMULINK MODELING ASSISTANCE VIA MODEL CLONES AND MACHINE LEARNING" by Bhisma Adhikari @ Miami University , 2021.
DOI: 10.6084/m9.figshare.16692697.v1
title: Figure4

description: genes expression level (strawberry)total anthocyanin (strawberry)<br>
DOI: 10.6084/m9.figshare.16692703.v1
title: Figure5

description: anthocyanin content
DOI: 10.6084/m9.figshare.16692703
title: Figure5

description: anthocyanin content
DOI: 10.6084/m9.figshare.16692697
title: Figure4

description: genes expression level (strawberry)total anthocyanin (strawberry)<br>
DOI: 10.6084/m9.figshare.16692640
title: Figure2

description: gene expression at different developmental stagesgene expression in different tissues<br>
DOI: 10.6084/m9.figshare.16692640.v1
title: Figure2

description: gene expression at different developmental stagesgene expression in different tissues<br>
DOI: 10.5281/zenodo.3581464
title: E-THEMIS Thermal Anomaly Simulation Observations

description: This dataset contains 100,000 simulated observations of Europa with the E-THEMIS instrument. Each observation was generated by randomly selecting (1) one of 46 planned Europa flybys by the Europa Clipper from the 17F12_V2 trajectory and (2) the distance of the spacecraft to Europa (±50,000 km from closest approach). We used the KRC thermal model to simulate the Europa surface temperature as a function of latitude, longitude, and local solar time (Sun position). We simulated the appearance of Europa within the E-THEMIS field of view given the Europa radius of 1591 km. We used ray tracing to determine, given the surface temperature model and the relative positions of Europa and the spacecraft, the amount of thermal radiation from Europa that a given pixel would collect. We used Monte Carlo integration over 100 uniformly random sub-pixel locations within each pixel. We injected artificial thermal anomalies into the simulated Europa observations by selecting a random radius between 1 m and 25 km and random temperature between 75 K and 275 K, then modifying the modeled surface temperature. We used an instrument model that converts temperature to digital numbers to generate the final E-THEMIS data product. The ethemis_dn_to_temp.npz file contains the mapping from digital number to temperature in each of the three E-THEMIS bands. Each observation is also a NPY-formatted file containing the following entries: event_time: the simulated time at which the observation was acquired trial: the trial identifier (should match the file name) samples: the number of samples used in the Monte Carlo integration anomaly_radius_m: the (circular) anomaly radius in meters temperature: the temperature of the anomaly band1_dn: the digital number for each pixel in the observation (similar entries exist for the other bands) band1_mask: a mask specifying the fraction of each pixel containing an anomaly (similar entries exist for the other bands) The extracted dataset is roughly 18 Gb in size.
DOI: 10.5281/zenodo.2552813
title: E-THEMIS Thermal Anomaly Simulation Observations

description: This dataset contains 100,000 simulated observations of Europa with the E-THEMIS instrument. Each observation was generated by randomly selecting (1) one of 46 planned Europa flybys by the Europa Clipper from the 17F12_V2 trajectory and (2) the distance of the spacecraft to Europa (±50,000 km from closest approach). We used the KRC thermal model to simulate the Europa surface temperature as a function of latitude, longitude, and local solar time (Sun position). We simulated the appearance of Europa within the E-THEMIS field of view given the Europa radius of 1591 km. We used ray tracing to determine, given the surface temperature model and the relative positions of Europa and the spacecraft, the amount of thermal radiation from Europa that a given pixel would collect. We used Monte Carlo integration over 100 uniformly random sub-pixel locations within each pixel. We injected artificial thermal anomalies into the simulated Europa observations by selecting a random radius between 1 m and 25 km and random temperature between 75 K and 275 K, then modifying the modeled surface temperature. We used an instrument model that converts temperature to digital numbers to generate the final E-THEMIS data product. The ethemis_dn_to_temp.npz file contains the mapping from digital number to temperature in each of the three E-THEMIS bands. Each observation is also a NPY-formatted file containing the following entries: event_time: the simulated time at which the observation was acquired trial: the trial identifier (should match the file name) samples: the number of samples used in the Monte Carlo integration anomaly_radius_m: the (circular) anomaly radius in meters temperature: the temperature of the anomaly band1_dn: the digital number for each pixel in the observation (similar entries exist for the other bands) band1_mask: a mask specifying the fraction of each pixel containing an anomaly (similar entries exist for the other bands) The extracted dataset is roughly 18 Gb in size.
DOI: 10.15468/cmye8m
title: Acropoma profundum, a New Species of Lanternbelly (Teleostei: Perciformes: Acropomatidae) from the Solomon Islands

description: This dataset contains the digitized treatments in Plazi based on the original journal article Okamoto, Makoto (2014): Acropoma profundum, a New Species of Lanternbelly (Teleostei: Perciformes: Acropomatidae) from the Solomon Islands. Species Diversity 19 (1): 9-14, DOI: 10.12782/sd.19.1.009, URL: http://dx.doi.org/10.12782/sd.19.1.009
DOI: 10.6084/m9.figshare.16692718
title: Dataset_for_gravity_betweenness_Abu_Dhabi_NPUs

description: This dataset includes:<br> 1_Procedure of computing gravity and betweenness for sample of NPUs 2_Betweenness and gravity data at local and global scales for samples of NPUs 3_Normalized Betweenness data at local and global scales 4_Sampling figures 5_All AutoCAD, ArcGIS, Illustrator, Rhino files
DOI: 10.6084/m9.figshare.16692718.v1
title: Dataset_for_gravity_betweenness_Abu_Dhabi_NPUs

description: This dataset includes:<br> 1_Procedure of computing gravity and betweenness for sample of NPUs 2_Betweenness and gravity data at local and global scales for samples of NPUs 3_Normalized Betweenness data at local and global scales 4_Sampling figures 5_All AutoCAD, ArcGIS, Illustrator, Rhino files
DOI: 10.6084/m9.figshare.16692736
title: BakewellData_TempImmuneFuncRST.xlsx

description: Data used for Temperature and Immune Function of a Desert Anuran (<i>Anaxyrus punctatus</i>)
DOI: 10.6084/m9.figshare.16692736.v1
title: BakewellData_TempImmuneFuncRST.xlsx

description: Data used for Temperature and Immune Function of a Desert Anuran (<i>Anaxyrus punctatus</i>)
DOI: 10.25345/c55p0z
title: MassIVE MSV000088166 - IRS1 proximity-dependent biotin labeling
title: Data contains LC-MS results of proximity-dependent biotin labeling to generate the protein interaction network of IRS1 protein fused with Flag-miniTurbo (N-terminal tag) and expressed in T-REx HEK293 cells.
DOI: 10.3886/e149961v1
title: CMS Doctors and Clinicians Data, 2014-2021

description: This deposit contains the Centers for Medicare & Medicaid Services’ (CMS) official data on doctors, clinicians, and groups listed on Medicare Care Compare.<br>The files in this deposit were downloaded from the CMS website and archived by Michael Darisse, Cornell University. Additional information edited by Michael Darisse and Lars Vilhuber, Cornell University and American Economic Association.<br><br><br><br>
DOI: 10.22003/xfel.eu-data-900000-00
title: HERA-South SPB/AGIPD Comissioning
DOI: 10.3886/e151082
title: Indigenous systems of realtionality

description: This study looked at Indigenous systems of relationality across three cases in Thailand, México and Colombia. The study draws from everyday family life and what this might teach us for designing school learning and teaching. In the first case, we draw on family village walks in northern Thailand with teachers, students, and their families. This data was collected in 2017 by the PI as part of a broader dissertation study research. In case two, we draw on both ethnographic research as well as photovoice methodologies in Cherán México. Finally we draw from videos curated by families in Colombia and engage in a micro-analysis of their talk-in-interaction.
description: Smallest Geographic Unit: Local communities
description: audio computer-assisted self interview (ACASI); coded on-site observation; coded video observation; record abstracts;
DOI: 10.5281/zenodo.5534689
title: Large structural variations in the haplotype-resolved African cassava genome

description: Cassava TME7 haplotype resolved assemblies and annotation ABSTRACT: Cassava (<em>Manihot esculenta</em> Crantz, 2n=36) is a global food security crop. Cassava has a highly heterozygous genome, high genetic load, and genotype-dependent asynchronous flowering. It is typically propagated by stem cuttings and any genetic variation between haplotypes, including large structural variations, is preserved by such clonal propagation. Traditional genome assembly approaches generate a collapsed haplotype representation of the genome. In highly heterozygous plants, this results in artifacts and an oversimplification of heterozygous regions. We used a combination of Pacific Biosciences (PacBio), Illumina, and Hi-C to resolve each haplotype of the genome of a farmer-preferred cassava line, TME7 (Oko-iyawo). PacBio reads were assembled using the FALCON suite. Phase switch errors were corrected using FALCON-Phase and Hi-C read data. The ultra-long-range information from Hi-C sequencing was also used for scaffolding. Comparison of the two phases revealed more than 5,000 large haplotype-specific structural variants affecting over 8 Mb, including insertions and deletions spanning thousands of base pairs. The potential of these variants to affect allele specific expression was further explored. RNA-seq data from 11 different tissue types were mapped against the scaffolded haploid assembly and gene expression data are incorporated into our existing easy-to-use web-based interface to facilitate use by the broader plant science community. These two assemblies provide an excellent means to study the effects of heterozygosity, haplotype-specific structural variation, gene hemizygosity, and allele specific gene expression contributing to important agricultural traits and further our understanding of the genetics and domestication of cassava.
DOI: 10.5281/zenodo.5106526
title: Large structural variations in the haplotype-resolved African cassava genome

description: Cassava TME7 haplotype resolved assemblies and annotation ABSTRACT: Cassava (<em>Manihot esculenta</em> Crantz, 2n=36) is a global food security crop. Cassava has a highly heterozygous genome, high genetic load, and genotype-dependent asynchronous flowering. It is typically propagated by stem cuttings and any genetic variation between haplotypes, including large structural variations, is preserved by such clonal propagation. Traditional genome assembly approaches generate a collapsed haplotype representation of the genome. In highly heterozygous plants, this results in artifacts and an oversimplification of heterozygous regions. We used a combination of Pacific Biosciences (PacBio), Illumina, and Hi-C to resolve each haplotype of the genome of a farmer-preferred cassava line, TME7 (Oko-iyawo). PacBio reads were assembled using the FALCON suite. Phase switch errors were corrected using FALCON-Phase and Hi-C read data. The ultra-long-range information from Hi-C sequencing was also used for scaffolding. Comparison of the two phases revealed more than 5,000 large haplotype-specific structural variants affecting over 8 Mb, including insertions and deletions spanning thousands of base pairs. The potential of these variants to affect allele specific expression was further explored. RNA-seq data from 11 different tissue types were mapped against the scaffolded haploid assembly and gene expression data are incorporated into our existing easy-to-use web-based interface to facilitate use by the broader plant science community. These two assemblies provide an excellent means to study the effects of heterozygosity, haplotype-specific structural variation, gene hemizygosity, and allele specific gene expression contributing to important agricultural traits and further our understanding of the genetics and domestication of cassava.
DOI: 10.5517/ccdc.csd.cc1m9yhc
title: CCDC 1499113: Experimental Crystal Structure Determination

description: Related Article: J. Christina Jebapriya, D. Reuben Jonathan, Shivaraj R. Maidur, Prabhu Nallamuthu, P. S Patil, Johanan Christian Prasana|2021|J.Mol.Struct.|1246|131184|doi:10.1016/j.molstruc.2021.131184
DOI: 10.6073/pasta/f58ac829a8901ba7e9ec4841483650f5
title: buttsee

description: Meteorological sensors are located at the top of a 20 m tower, the NADP Tower, behind the main buildings of El Verde Field Station, 350 masl. No large trees are present near the tower. Sensors are connected to a Campbell 1000X data logger, with a storage module, and downloaded every two weeks using a wireless radio connection from the laboratory to the tower. Data are compiled at the station before it is made available. The station was initiated in 2000. Complementary manual measurements of rainfall and maximum and minimum air temperatures are taken on a daily basis at a separate physical location.
DOI: 10.6084/m9.figshare.16691539.v3
title: actor_groups.csv

description: Actors identified in German news media coverage on COVID-19 (2020) and on former (potential) pandemics (swine and bird flu; 2004-2015)
DOI: 10.6084/m9.figshare.16691539
title: actor_groups.csv

description: Actors identified in German news media coverage on COVID-19 (2020) and on former (potential) pandemics (swine and bird flu; 2004-2015)
DOI: 10.6073/pasta/3bd93848f3677d8285c139984adc1ab0
title: Meteorological data from El Verde Field Station: NADP Tower

description: Meteorological sensors are located at the top of a 20 m tower, the NADP Tower, behind the main buildings of El Verde Field Station, 350 masl. No large trees are present near the tower. Sensors are connected to a Campbell 1000X data logger, with a storage module, and downloaded every two weeks using a wireless radio connection from the laboratory to the tower. Data are compiled at the station before it is made available. The station was initiated in 2000. Complementary manual measurements of rainfall and maximum and minimum air temperatures are taken on a daily basis at a separate physical location.
DOI: 10.25345/c51v9v
title: MassIVE MSV000088167 - Nano ProteOmic sample Preparation nPOP_update
title: Update to Nano ProteOmic sample Preparation nPOP_update preprint
DOI: 10.6073/pasta/88b07de13b1029d954420e77a58b8349
title: Geospatial data for Luquillo Mountains, Puerto Rico: Mean annual precipitation, elevation, watershed outlines, and rain gage locations

description: These geospatial data sets were developed as part of a new analysis of all known current and historical rain gages in the Luquillo Mountains, Puerto Rico published in the journal article Murphy, S.F., Stallard, R.F., Scholl, M.A., Gonzalez, G., and Torres-Sanchez, A.J., 2017, Reassessing rainfall in the Luquillo Mountains, Puerto Rico: Local and global ecohydrological implications: PLOS One 12(7): e0180987, p. 1-26, https://doi.org/10.1371/journal.pone.0180987. That article provides a revised map of mean annual precipitation developed using elevation regression functions and residual interpolation, and that map is presented here in a raster file. Most previous forest- and watershed-wide estimates of precipitation (and evapotranspiration, as inferred by a water balance) have assumed that precipitation increases consistently with elevation in the Luquillo Mountains; therefore, precipitation in leeward Luquillo watersheds has been overestimated by up to 40%.Because the Luquillo Mountains often serve as a wet tropical archetype in global assessments of basic ecohydrological processes, these revised estimates are relevant to regional and global assessments of runoff efficiency, hydrologic effects of reforestation, geomorphic processes, and climate change.
DOI: 10.6084/m9.figshare.16692637
title: Figure1

description: total anthocyanin content.xlsx
DOI: 10.25345/c5x55h
title: MassIVE Reanalysis RMSV000000346.2 - CCMS ProteoCarta MS-GF+ reanalysis of Enterobacter cloacae from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Enterobacter cloacae (MSV000083784/PXD013885).
DOI: 10.25345/c5sc3k
title: MassIVE Reanalysis RMSV000000346.3 - CCMS ProteoCarta MS-GF+ reanalysis of Enterococcus faecalis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Enterococcus faecalis (MSV000083784/PXD013885).
DOI: 10.25345/c5np09
title: MassIVE Reanalysis RMSV000000346.4 - CCMS ProteoCarta MS-GF+ reanalysis of Klebsiella oxytoca from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Klebsiella oxytoca (MSV000083784/PXD013885).
DOI: 10.25345/c5hv7f
title: MassIVE Reanalysis RMSV000000346.5 - CCMS ProteoCarta MS-GF+ reanalysis of Staphylococcus aureus from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Staphylococcus aureus (MSV000083784/PXD013885).
DOI: 10.25345/c5d567
title: MassIVE Reanalysis RMSV000000346.6 - CCMS ProteoCarta MS-GF+ reanalysis of Staphylococcus haemolyticus from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Staphylococcus haemolyticus (MSV000083784/PXD013885).
DOI: 10.25345/c58c2j
title: MassIVE Reanalysis RMSV000000346.9 - CCMS ProteoCarta MS-GF+ reanalysis of Klebsiella pneumoniae from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Klebsiella pneumoniae (MSV000083784/PXD013885).
DOI: 10.25345/c54p2d
title: MassIVE Reanalysis RMSV000000346.10 - CCMS ProteoCarta MS-GF+ reanalysis of Escherichia coli from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Escherichia coli (MSV000083784/PXD013885).
DOI: 10.25345/c50v85
title: MassIVE Reanalysis RMSV000000346.8 - CCMS ProteoCarta MS-GF+ reanalysis of Klebsiella aerogenes from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Klebsiella aerogenes (MSV000083784/PXD013885).
DOI: 10.25345/c5w56k
title: MassIVE Reanalysis RMSV000000346.7 - CCMS ProteoCarta MS-GF+ reanalysis of Proteus mirabilis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Proteus mirabilis (MSV000083784/PXD013885).
DOI: 10.25345/c5mp2r
title: MassIVE Reanalysis RMSV000000346.8 - CCMS ProteoCarta MS-GF+ reanalysis of Klebsiella aerogenes from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Klebsiella aerogenes (MSV000083784/PXD013885).
DOI: 10.25345/c5rc38
title: MassIVE Reanalysis RMSV000000346.10 - CCMS ProteoCarta MS-GF+ reanalysis of Escherichia coli from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Escherichia coli (MSV000083784/PXD013885).
DOI: 10.25345/c5gv9w
title: MassIVE Reanalysis RMSV000000346.7 - CCMS ProteoCarta MS-GF+ reanalysis of Proteus mirabilis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Proteus mirabilis (MSV000083784/PXD013885).
DOI: 10.25345/c57g1w
title: MassIVE Reanalysis RMSV000000346.8 - CCMS ProteoCarta MS-GF+ reanalysis of Klebsiella aerogenes from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 5562a0fadfa641ac9660eda88d8cdc04]
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Klebsiella aerogenes (MSV000083784/PXD013885).