cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.z2zcts
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mitromorpha biplicata Dall, 1889"
 ]
}

 The dataset includes 232 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092312-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c59kyu
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taeniamia melasma (Lachner & Taylor, 1960)"
 ]
}

 The dataset includes 83 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057647-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6qx7z
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-85.5822754000000003 42.2844649000000032, -85.5822754000000003 42.2850101499999980, -85.5822754000000003 42.2856235499999968, -85.5822754000000003 42.2861347199999997, -85.5822754000000003 42.2868162799999965, -85.5822754000000003 42.2876000700000034, -85.5822754000000003 42.2881793999999971, -85.5814539800000063 42.2881793999999971, -85.5805298700000066 42.2881793999999971, -85.5798795799999965 42.2881793999999971, -85.5788528000000071 42.2881793999999971, -85.5788528000000071 42.2875319199999993, -85.5788528000000071 42.2867481199999986, -85.5788528000000071 42.2863391899999996, -85.5788528000000071 42.2855553999999998, -85.5788528000000071 42.2850442299999969, -85.5788528000000071 42.2844649000000032, -85.5797426799999954 42.2844649000000032, -85.5803245200000049 42.2844649000000032, -85.5810774899999984 42.2844649000000032, -85.5818304600000062 42.2844649000000032, -85.5822754000000003 42.2844649000000032))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 242 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092313-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xjgkm
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum aurigeranum Jeanb. & Timb.-Lagr."
 ]
}

 The dataset includes 301 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154587-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6j4rhx
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mitromorpha crenipicta (Dautzenberg, 1889)"
 ]
}

 The dataset includes 101 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092322-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mr8mt
title: Occurrence Download

description: A dataset containing 14009 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salaria fluviatilis (Asso, 1801)"
 ]
}

 The dataset includes 14009 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057642-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxnxrn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kalimeris hispida Lindl. ex DC., 1836"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000675-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kxfee
title: Occurrence Download

description: A dataset containing 4199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scorpaena notata Rafinesque, 1810"
 ]
}

 The dataset includes 4199 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057673-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cfean
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mitromorpha brevispira Kilburn, 1986"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092314-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em8e2e
title: Occurrence Download

description: A dataset containing 1956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Craspedacusta Lankester, 1880"
 ]
}

 The dataset includes 1956 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154594-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4f3eu
title: Occurrence Download

description: A dataset containing 199712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Betonica officinalis L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 199712 records from 643 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057639-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuvrt3
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mitromorpha carpenteri Glibert, 1954"
 ]
}

 The dataset includes 160 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092316-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umk49v
title: Occurrence Download

description: A dataset containing 37726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex ornithopoda Willd.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37726 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097774-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gyzd3
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbonaricus davaoensis (Herald, 1953)"
 ]
}

 The dataset includes 29 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057654-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eeye4v
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-85.5872272000000009 42.2796980999999974, -85.5872272000000009 42.2798574799999969, -85.5872272000000009 42.2802957600000013, -85.5872272000000009 42.2808934199999982, -85.5872272000000009 42.2810328699999971, -85.5872272000000009 42.2816903000000011, -85.5868688500000019 42.2816903000000011, -85.5865503400000023 42.2816903000000011, -85.5861123699999951 42.2816903000000011, -85.5858535800000055 42.2816903000000011, -85.5852762699999943 42.2816903000000011, -85.5849378399999949 42.2816903000000011, -85.5844401599999998 42.2816903000000011, -85.5840818199999944 42.2816903000000011, -85.5837831999999992 42.2816903000000011, -85.5837831999999992 42.2814113900000024, -85.5837831999999992 42.2809133399999979, -85.5837831999999992 42.2804949800000003, -85.5837831999999992 42.2803156800000011, -85.5837831999999992 42.2802359900000013, -85.5837831999999992 42.2796980999999974, -85.5842211800000001 42.2796980999999974, -85.5847387700000013 42.2796980999999974, -85.5851170100000047 42.2796980999999974, -85.5855151500000062 42.2796980999999974, -85.5858734899999973 42.2796980999999974, -85.5863313499999947 42.2796980999999974, -85.5867892200000000 42.2796980999999974, -85.5872272000000009 42.2796980999999974))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092323-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxh32r
title: Occurrence Download

description: A dataset containing 346346 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stachys sylvatica L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 346346 records from 1064 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057648-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15242143
title: Files: The sequence of a complete bacteriophage (DgiS1ag)

description: Files:



Assemblies: Acinetobacter guillouiae and Rickettsia (fna files).

Kraken: Results from kraken 2 (ods files).

Mummer: Results from MUMmer and R script to visualize them (R and delta files).
DOI: 10.5281/zenodo.15247259
title: Files: The sequence of a complete bacteriophage (DgiS1ag)

description: Files:



Assemblies: Acinetobacter guillouiae and Rickettsia (fna files).

Kraken: Results from kraken 2 (tgz files).

Mummer: Results from MUMmer and R script to visualize them (R and delta files).
DOI: 10.6084/m9.figshare.30489368
title: Supplementary Material for: Abnormal Right Ventricular to Pulmonary Artery Coupling in Patients with End-Stage Kidney Disease and Normalization After Renal Transplantation: An Observational Study

description: Background: Pulmonary hypertension and right ventricular (RV) dysfunction are associated with an increase in mortality and worse prognosis in patients with end-stage kidney disease (ESKD), but pathophysiologic mechanisms underlying the progression of RV dysfunction remains incompletely understood. Present study aimed to understand right ventricular to pulmonary artery (RV-PA) coupling, which is an early indicator of transition to RV dysfunction, to better characterize adaptive RV response to increased afterload in ESKD patients and changes in RV-PA coupling following renal transplantation. Methods: 111 patients with ESKD, including 49 patients scheduled for renal transplantation, underwent a detailed echocardiographic examination and measurement of tricuspid annular plane excursion to pulmonary artery systolic pressure (TAPSE/PASP) ratio, and a repeat examination was performed 6 months after the baseline examination. Results: Patients with ESKD had significantly lower TAPSE/PASP ratio at baseline (1.02 (0.71 - 1.63) vs. 1.29 (1.09 - 1.96), p&lt;0.001). In 40 patients that underwent transplantation, TAPSE/PASP ratio increase significantly from 0.97 (0.72 - 1.42) to 1.30 (1.01 - 1.82) (p=0.03), while in 27 patients remained on dialysis there was a non-significant reduction in TAPSE/PASP ratio (1.21 (0.71 - 1.62) vs. 0.84 (0.61 - 1.38), p=0.44). The change in TAPSE/PASP ratio correlated significantly with the change in pulmonary vascular resistance (OR:0.61,95%CI:0.51-0.72, p&lt;0.001) and left ventricular mass index (OR:0.97, 95%CI:0.96-0.99, p=0.001) after adjustment. Conclusions: Patients with ESKD had abnormal RV-PA coupling, as indicated by a reduced TAPSE/PASP ratio, which normalizes 6 months after renal transplantation.
DOI: 10.6084/m9.figshare.30489368.v1
title: Supplementary Material for: Abnormal Right Ventricular to Pulmonary Artery Coupling in Patients with End-Stage Kidney Disease and Normalization After Renal Transplantation: An Observational Study

description: Background: Pulmonary hypertension and right ventricular (RV) dysfunction are associated with an increase in mortality and worse prognosis in patients with end-stage kidney disease (ESKD), but pathophysiologic mechanisms underlying the progression of RV dysfunction remains incompletely understood. Present study aimed to understand right ventricular to pulmonary artery (RV-PA) coupling, which is an early indicator of transition to RV dysfunction, to better characterize adaptive RV response to increased afterload in ESKD patients and changes in RV-PA coupling following renal transplantation. Methods: 111 patients with ESKD, including 49 patients scheduled for renal transplantation, underwent a detailed echocardiographic examination and measurement of tricuspid annular plane excursion to pulmonary artery systolic pressure (TAPSE/PASP) ratio, and a repeat examination was performed 6 months after the baseline examination. Results: Patients with ESKD had significantly lower TAPSE/PASP ratio at baseline (1.02 (0.71 - 1.63) vs. 1.29 (1.09 - 1.96), p&lt;0.001). In 40 patients that underwent transplantation, TAPSE/PASP ratio increase significantly from 0.97 (0.72 - 1.42) to 1.30 (1.01 - 1.82) (p=0.03), while in 27 patients remained on dialysis there was a non-significant reduction in TAPSE/PASP ratio (1.21 (0.71 - 1.62) vs. 0.84 (0.61 - 1.38), p=0.44). The change in TAPSE/PASP ratio correlated significantly with the change in pulmonary vascular resistance (OR:0.61,95%CI:0.51-0.72, p&lt;0.001) and left ventricular mass index (OR:0.97, 95%CI:0.96-0.99, p=0.001) after adjustment. Conclusions: Patients with ESKD had abnormal RV-PA coupling, as indicated by a reduced TAPSE/PASP ratio, which normalizes 6 months after renal transplantation.
DOI: 10.15468/dl.z9h8es
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Exorista civilis"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008064-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30489371
title: Supplementary Material for: Role of mitophagy in ischemia-reperfusion renal injury: new insights from bioinformatics analysis

description: Introduction: Mitophagy is central to acute kidney injury (AKI) pathogenesis. Elucidating its molecular interplay with AKI is crucial for novel therapeutics. Methods: This study is based on transcriptome sequencing combined with single-cell sequencing, and applies bioinformatics analysis. Finally, it is verified by in vitro, in vivo and clinical specimen experiments. Results: In transcriptome analysis, combining protein-protein interaction mapping with machine intelligence algorithms, we screened out two mitophagy-related differentially expressed genes (MitoDEGs), Solute Carrier Family 3 Member 2 (SLC3A2) and Thioredoxin (TXN). The immunological analysis revealed a notable rise in monocyte infiltration in the immune microenvironment of ischemia-reperfusion renal injury (IRI)-AKI. Spearman analysis indicated hub MitoDEGs were positively correlated with pro-inflammatory immune cell infiltration, and negatively correlated with anti-inflammatory or regulatory immune cell infiltration. Based on the highest binding score, 506-26-3 CTD (Gamma-linolenic acid, GLA) was determined to be the top promising therapeutic candidate. At the single-cell level, hub MitoDEGs were mainly expressed in proximal tubular. In cell experiments, mitophagy was inhibited after hypoxia-reoxygenation, SLC3A2 matched earlier results, while TXN was contrary to the previous analysis results. In the IRI-AKI rat experiments, the findings regarding hub MitoDEGs aligned with our prior analysis, revealing a decrease in the expression of genes associated with mitophagy. Consequently, we directed our attention to the expression levels of SLC3A2 in clinical cases of AKI, where we observed a notable increase. Conclusion: Our research indicates that SLC3A2 could be a crucial target for enhancing IRI-AKI through the modulation of the mitophagy pathway.
DOI: 10.6084/m9.figshare.30489371.v1
title: Supplementary Material for: Role of mitophagy in ischemia-reperfusion renal injury: new insights from bioinformatics analysis

description: Introduction: Mitophagy is central to acute kidney injury (AKI) pathogenesis. Elucidating its molecular interplay with AKI is crucial for novel therapeutics. Methods: This study is based on transcriptome sequencing combined with single-cell sequencing, and applies bioinformatics analysis. Finally, it is verified by in vitro, in vivo and clinical specimen experiments. Results: In transcriptome analysis, combining protein-protein interaction mapping with machine intelligence algorithms, we screened out two mitophagy-related differentially expressed genes (MitoDEGs), Solute Carrier Family 3 Member 2 (SLC3A2) and Thioredoxin (TXN). The immunological analysis revealed a notable rise in monocyte infiltration in the immune microenvironment of ischemia-reperfusion renal injury (IRI)-AKI. Spearman analysis indicated hub MitoDEGs were positively correlated with pro-inflammatory immune cell infiltration, and negatively correlated with anti-inflammatory or regulatory immune cell infiltration. Based on the highest binding score, 506-26-3 CTD (Gamma-linolenic acid, GLA) was determined to be the top promising therapeutic candidate. At the single-cell level, hub MitoDEGs were mainly expressed in proximal tubular. In cell experiments, mitophagy was inhibited after hypoxia-reoxygenation, SLC3A2 matched earlier results, while TXN was contrary to the previous analysis results. In the IRI-AKI rat experiments, the findings regarding hub MitoDEGs aligned with our prior analysis, revealing a decrease in the expression of genes associated with mitophagy. Consequently, we directed our attention to the expression levels of SLC3A2 in clinical cases of AKI, where we observed a notable increase. Conclusion: Our research indicates that SLC3A2 could be a crucial target for enhancing IRI-AKI through the modulation of the mitophagy pathway.
DOI: 10.6084/m9.figshare.30489374
title: Supplementary Material for: Cognitive performance in late midlife as a predictor of frailty from late midlife into old age: a longitudinal birth cohort study

description: Abstract
Background: Cognitive decline is cross-sectionally associated with frailty in older adults. However, the longitudinal associations between cognitive performance in late midlife and subsequent frailty are less well understood.
Methods: Participants of the Helsinki Birth Cohort Study (n=1279) were assessed for cognitive performance in late midlife and a 41-item frailty index on up to three occasions from late midlife into old age. The CogState assessment assessed reaction time, response accuracy, choice reaction time, working memory, divided attention, and associated learning. Generalized linear mixed models estimated the association between baseline cognitive performance and the rate of change in frailty and were adjusted for sex, education, and smoking. 
Results: Each standard deviation slower reaction time was associated with a 1.02-1.07-fold higher level of frailty in late midlife in all domains except for simple reaction time. Each standard deviation higher response accuracy in choice reaction time was associated with a lower level of frailty (0.95-fold) in late midlife; better working memory response accuracy was associated with lower levels of frailty (0.94-fold) in women only. Longitudinally, each standard deviation higher reaction time response accuracy was associated with a slower increase in frailty from late midlife into old age; the annual rate of change was 0.97-fold. Furthermore, each standard deviation higher divided attention response accuracy was associated with an equally slower annual increase in frailty among men only. 
Conclusion: Poorer cognitive performance is associated with higher levels of frailty in late midlife. The association between cognitive performance and frailty from late midlife into old age was less consistent and varied by the cognitive trait being measured.
DOI: 10.6084/m9.figshare.30489374.v1
title: Supplementary Material for: Cognitive performance in late midlife as a predictor of frailty from late midlife into old age: a longitudinal birth cohort study

description: Abstract
Background: Cognitive decline is cross-sectionally associated with frailty in older adults. However, the longitudinal associations between cognitive performance in late midlife and subsequent frailty are less well understood.
Methods: Participants of the Helsinki Birth Cohort Study (n=1279) were assessed for cognitive performance in late midlife and a 41-item frailty index on up to three occasions from late midlife into old age. The CogState assessment assessed reaction time, response accuracy, choice reaction time, working memory, divided attention, and associated learning. Generalized linear mixed models estimated the association between baseline cognitive performance and the rate of change in frailty and were adjusted for sex, education, and smoking. 
Results: Each standard deviation slower reaction time was associated with a 1.02-1.07-fold higher level of frailty in late midlife in all domains except for simple reaction time. Each standard deviation higher response accuracy in choice reaction time was associated with a lower level of frailty (0.95-fold) in late midlife; better working memory response accuracy was associated with lower levels of frailty (0.94-fold) in women only. Longitudinally, each standard deviation higher reaction time response accuracy was associated with a slower increase in frailty from late midlife into old age; the annual rate of change was 0.97-fold. Furthermore, each standard deviation higher divided attention response accuracy was associated with an equally slower annual increase in frailty among men only. 
Conclusion: Poorer cognitive performance is associated with higher levels of frailty in late midlife. The association between cognitive performance and frailty from late midlife into old age was less consistent and varied by the cognitive trait being measured.
DOI: 10.6084/m9.figshare.29923697
title: Pediatric cGvHD dataset comprising cellular, cytokine, chemokine, metabolomic, and clinical measurements

description: Datasets accompanying the paper, "Distinct Biological Subtypes of Chronic GvHD after Pediatric Hematopoietic Cell Transplantation".
DOI: 10.6084/m9.figshare.29923697.v1
title: Pediatric cGvHD dataset comprising cellular, cytokine, chemokine, metabolomic, and clinical measurements

description: Datasets accompanying the paper, "Distinct Biological Subtypes of Chronic GvHD after Pediatric Hematopoietic Cell Transplantation".