cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21707813.v1
title: DOCI CSV dataset of the provenance information of all the citation data

description: This dataset contains the provenance information (in CSV format) of all the citation data included in DOCI, released on 13 December 2022. In particular, each line of the CSV file defines a citation, and includes the following information: <strong>[field "oci"]</strong> the Open Citation Identifier (OCI) for the citation; <strong>[field "snapshot"]</strong> the identifier of the snapshot; <strong>[field "agent"]</strong> the name of the agent that have created the citation data; <strong>[field "source"]</strong> the URL of the source dataset from where the citation data have been extracted; <strong>[field "created"]</strong> the creation time of the citation data. <strong>[field "invalidated"]</strong> the start of the destruction, cessation, or expiry of an existing entity by an activity; <strong>[field "description"]</strong> a textual description of the activity made; <strong>[field "update"]</strong> the UPDATE SPARQL query that keeps track of which metadata have been modified. The size of the zipped archive is 1.4 GB, while the size of the unzipped CSV file is 33 GB.Additional information about DOCI at official webpage.
DOI: 10.6084/m9.figshare.22491952.v1
title: Supplementary File 4

description: Multifasta file with 1,957 genes used in phylotenetic analyses supporting 1R/2R (132 in sea cucumber, 132 in Belcher’s lancelet, 24 in Florida lancelet, 363 in hagfish, 703 in sea lamprey, 94 in elephant shark, 316 in chicken, 323 in spotted gar). Gene alignments were visually inspected and manually curated if necessary as described in Supplementary Information. Related to Figure 4a.
DOI: 10.6084/m9.figshare.26105755.v2
title: Household-specific inflation rates for Italy 2015-2023

description: The file "dataset_regression_income.csv" contains a dataset developed in the analysis of inflation heterogeneity for Italian Households in the period 2015-2023.The dataset is the outcome of merging the yearly Household Budget Surveys (HBS) conducted by the Italian National Institute of Statistics (Istat), the Harmonised Index of Consumer Prices (HICP) which is calculated monthly by Istat, according to EU regulations, and the Survey on Households Income and Wealth (SHIW) conducted by Bank of Italy.Mapping price information into consumption decisions and aggregating an individual price index for each household according to a Laspeyres Formula leads to the computation of household-level inflation rates.Furthermore, we compute non-durable equivalent expenditure for each household as a proxy of living standards. The variable is obtained by subtracting durable expenditure from total aggregate expenditure and scaling down by an household equivalent scale (in the benchmark specification, the square root of the household size). The decile distribution of the variable is also computed.Finally, we apply a statistical matching procedure to integrate income information from SHIW data sources. The output is a synthetic dataset containing both expenditure and income information that preserves the joint distribution and correlation structures of the original datasets.The file "ISTAT_MFR_HBS_EUR.csv" is a conversion table that maps ECOICOP items to HBS expenditure voices.
DOI: 10.6084/m9.figshare.5125213.v1
title: Supplementary Material for: Sexual Dimorphism of the Electrosensory System: A Quantitative Analysis of Nerve Axons in the Dorsal Anterior Lateral Line Nerve of the Blue-Spotted Fantail Stingray <b><i>(Taeniura lymma)</i></b>

description: Quantitative studies of sensory axons provide invaluable insights into the functional significance and relative importance of a particular sensory modality. Despite the important role electroreception plays in the behaviour of elasmobranchs, to date, there have been no studies that have assessed the number of electrosensory axons that project from the peripheral ampullae to the central nervous system (CNS). The complex arrangement and morphology of the peripheral electrosensory system has a significant influence on its function. However, it is not sufficient to base conclusions about function on the peripheral system alone. To fully appreciate the function of the electrosensory system, it is essential to also assess the neural network that connects the peripheral system to the CNS. Using stereological techniques, unbiased estimates of the total number of axons were obtained for both the electrosensory bundles exiting individual ampullary organs and those entering the CNS (via the dorsal root of the anterior lateral line nerve, ALLN) in males and females of different sizes. The dorsal root of the ALLN consists solely of myelinated electrosensory axons and shows both ontogenetic and sexual dimorphism. In particular, females exhibit a greater abundance of electrosensory axons, which may result in improved sensitivity of the electrosensory system and may facilitate mate identification for reproduction. Also presented are detailed morphological data on the peripheral electrosensory system to allow a complete interpretation of the functional significance of the sexual dimorphism found in the ALLN.
DOI: 10.6084/m9.figshare.17869223.v1
title: Seurat object for the spatial transcriptomic data of sample HCM1220C

description: Seurat object for the spatial transcriptomic data of sample HCM1220C
DOI: 10.6084/m9.figshare.13292522.v2
title: PlasmidFinder output (Table S9)

description: PlasmidFinder replicon typing output
DOI: 10.6084/m9.figshare.24171672.v1
title: Datasets for Crime Hotspot Prediction Project

description: Datasets: This repository includes a folder titled Datasets that contains all crime and park event tables. These tables consist of event observations across street segments (columns) with time steps (rows). This is a crucial aspect of the project. Additionally, the folder contains Python pickles that store network information, street segment details, and crime location information. Each file in this folder is required by the script to generate predictions.Predictions: The folder also contains predictions across all the models (e.g., theft daily, robbery shift). These files have two columns: actual and predicted values, respectively. The structure is 2459 rows by test days. This means that the first 2459 rows represent predictions for each segment on the first day, the next 2459 rows represent predictions for the second day, and so on.
DOI: 10.6084/m9.figshare.25002434.v1
title: Supplementary Material for: Alteration of thyroid hormones in mouse models of Alzheimer's disease and aging

description: Introduction: Aging is characterized by the deterioration of a wide range of functions in tissues and organs, and Alzheimer's disease (AD) is a neurodegenerative disease characterized by cognitive impairment. Hypothyroidism occurs when there is insufficient production of thyroid hormones (THs) by the thyroid. The relationship between hypothyroidism and aging as well as AD is controversial at present.
Methods: We established an animal model of AD (FAD4T) with mutations in the APP and PSEN1 genes, and we performed a thyroid function test and RNA-sequencing (RNA-Seq) of the thyroid from FAD4T and naturally aging mice. We also studied gene perturbation correlation in FAD4T mouse thyroid, bone marrow and brain by futher single-cell RNA sequencing (scRNA-seq) data of bone marrow and brain.
Results: In this study, we found alterations in THs in both AD and aging mice. RNA-seq data showed significant upregulation of T-cell infiltration- and cell proliferation-related genes in the FAD4T mouse thyroid. In addition, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses revealed that upregulated genes were enriched in functional gene modules of activation of immune cells. Downregulated energy metabolism-related genes were prominent in aging thyroids, which reflected the reduction in THs. GSEA showed a similar enrichment tendency in both mouse thyroids, suggesting their analogous inflammation state. In addition, the regulation of leukocyte activation and migration was a common signature between the thyroid, brain and bone marrow of FAD4T mice. 
Conclusions: Our findings identified immune cell infiltration of the thyroid as the potential underlying mechanism of the alteration of THs in AD and aging.
DOI: 10.6084/m9.figshare.7379600.v1
title: Data file 1

description: Geographical origin of the crAssphage genomes preoviously reported
DOI: 10.6084/m9.figshare.1444343.v1
title: Clustering of Technical Capabilities within Regions

description: Abstract and poster from International Conference on Computational Social Science, 8-12 June 2015, Helsinki.
DOI: 10.6084/m9.figshare.24523564.v1
title: 11 Oct to 18 Oct.zip (csv format)

description: This set of data consists of electrical parameters for 8 electrical panels. However, data for DB ML2 and EMSB 1 are missing. Electrical parameters available are voltage, current, frequency, real power, reactive power, apparent power, power factor, and odd harmonics for current.
DOI: 10.6084/m9.figshare.5123686.v1
title: Supplementary Material for: Motor Symptoms and Schizophrenia

description: Classical schizophrenia literature reports motor symptoms as characteristic of the disorder. After the introduction of neuroleptic drugs, the existence of genuine motor disorders was challenged. Renewed interest arose as symptoms were found in never-medicated patients. Reports focused on abnormal involuntary movements, parkinsonism, neurological soft signs, catatonia, negative symptoms, or psychomotor slowing. Since these syndromes refer to different concepts, however, the definitions are not congruent and the symptoms overlap. The prevalence rates of motor symptoms in schizophrenia are surprisingly high, and recent studies indicate a possible pathobiology. In particular, the development and maturation of the human motor system appears to be closely linked to the emergence of motor symptoms observed in schizophrenia. Post-mortem and neuroimaging results demonstrated aberrant structure and function of premotor and motor cortices, basal ganglia, thalamus, and the connecting white matter tracts. Animal models have focused on aberrant neurotransmission and genetic contributions. Findings of localized abnormal oligodendrocyte function and myelination point to the special role of the white matter in schizophrenia, and recent studies specifically found an association between motor abnormalities and white matter structure in schizophrenia. This review of the literature supports the idea that motor symptoms are closely related to the neurodevelopmental disturbances of schizophrenia and a distinct syndromal dimension with its own pathophysiology.
DOI: 10.6084/m9.figshare.25206371.v1
title: Outbreak-of-COVID-19-cases-and-mortality-in-Australia_A-modelling-study_Data

description: Australian COVID-19 actual incidence data from January to December 2021 was used to calibrate our model.
DOI: 10.6084/m9.figshare.25712163.v1
title: <b>iDLB-Pred</b>

description: Intrinsically disordered regions, or IDRs, are parts of protein sequence that do not have a stable three-dimensional structure under physiological conditions. Many proteins contain one or more of these IDRs.
DOI: 10.17632/k8xcwnzbfv
title: The settlement of high HSR embankment supported by the GRPS with geocell reinforcement

description: This dataset shows the simulation results of the settlement of high HSR embankment supported by the GRPS with geocell reinforcement system. The input variables include the distribution load, the DCM pile diameter, the soft soil thickness, the embankment height, and the number of geocell layers; while the settlement of the embankment after 100 years is the output.
DOI: 10.6084/m9.figshare.24049200.v3
title: scFoundation:Large Scale Foundation Model on Single-cell Transcriptomics - processed datasets

description: This data repository contains the processed data used for scFoundation ablation, cell mapping, and gene module inference experiments.The source of the original data :https://figshare.com/articles/dataset/Precise_disease-state_identification_with_healthy_single-cell_references_-_processed_datasets_and_models/21456645https://data.mendeley.com/datasets/sm67hr5bpm/1https://github.com/CompBioT/SCAD
DOI: 10.6084/m9.figshare.7892384.v1
title: gVCF_NA18940

description: 1000 Genomes gVCF mapped to hs37d5 for NA18940. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.26005189.v1
title: Raw data-code-ACMNet

description: <b>Background</b>. For space object detection tasks, conventional optical cameras face various application challenges, including backlight issues and dim light conditions. As a novel optical camera, the event camera has the advantages of high temporal resolution and high dynamic range due to asynchronous output characteristics, which provides a new solution to the above challenges. However, the asynchronous output characteristic of event cameras makes them incompatible with conventional object detection methods designed for frame images.<b>Methods</b>. Asynchronous convolutional memory network (ACMNet) for processing event camera data is proposed to solve the problem of backlight and dim space object detection. The key idea of ACMNet is to first characterize the asynchronous event streams with the Event Spike Tensor (EST) voxel grid through the exponential kernel function, then extract spatial features using a feed-forward feature extraction network, and aggregate temporal features using a proposed convolutional spatiotemporal memory module ConvLSTM, and finally, the end-to-end object detection using continuous event streams is realized.<b>Results</b>. Comparison experiments among ACMNet and classical object detection methods are carried out on Event_DVS_space7, which is a large-scale space synthetic event dataset based on event cameras. The results show that the performance of ACMNet is superior to the others, and the mAP is improved by 12.7% while maintaining the processing speed. Moreover, event cameras still have a good performance in backlight and dim light conditions where conventional optical cameras fail. This research offers a novel possibility for detection under intricate lighting and motion conditions, emphasizing the superior benefits of event cameras in the realm of space object detection.
DOI: 10.17605/osf.io/x4vcj
title: The DIMA dataset

description: The DIMA (Dimensions of Antisemitism) dataset
DOI: 10.6084/m9.figshare.13040516.v1
title: Research Software Engineering with Python: Data Files

description: This dataset consists of a number of full text of novels downloaded from Project Gutenberg.<br>The data are used in the following textbook:Irving D, Hertweck K, Johnston L, Ostblom J, Wickham C, Wilson G (in preparation). <em>Research Software Engineering with Python</em>. Taylor & Francis.<br>The book is also available online:https://merely-useful.github.io/py-rse/<br>
DOI: 10.6084/m9.figshare.13607615.v1
title: Diffraction data for: In Situ X-ray Diffraction Investigation of Electric Field-Induced Switching in a Hybrid Improper Ferroelectric

description: 'experimental_data' folder contains one run from a sample of Ca2.15Sr0.85Ti2O7 and a CeO2 standard run at ID15A'simulation_files' folder contains data for powder sample of Ca2.15Sr0.85Ti2O7 from I11, Rietveld refinement and example file for exporting data for simulations
DOI: 10.6084/m9.figshare.27173190.v1
title: Enformer Celltyping Performance data Fig. 4a

description: Enformer Celltyping Performance data Fig. 4a
DOI: 10.6084/m9.figshare.25894936.v1
title: Biophysics and Electrophysiology of Pulsed Field Ablation in Normal and Infarcted Porcine Cardiac Ventricular Tissue

description: Pulsed Field Ablation (PFA) is a new ablation method being rapidly adopted for treatment of atrial fibrillation, which shows advantages in safety and efficiency over radiofrequency and cryo-ablation. In this study, we used an in vivo swine model (10 healthy and 5 with chronic myocardial infarct) for ventricular PFA, collecting intracardiac electrograms, electro-anatomical maps, native T1-weighted and late gadolinium enhancement MRI, gross pathology, and histology. We used 1000-1500 V pulses, with 1-16 pulse trains to vary PFA dose. Lesions were assessed at 24 hours, 7 days, and 6 weeks in healthy and at 48 hours in infarcted ventricles. Comparisons of lesion sizes using a numerical model enabled us to determine lethal electric field thresholds for cardiac tissue and its dependence on the number of pulse trains. Similar thresholds were found in normal and infarcted hearts. Numerical modeling and temperature-sensitive MRI confirmed the nonthermal nature of PFA, with less than 2% of a lesion’s volume at the highest dose used being attributed to thermal damage. Longitudinal cardiac MRI and histology provide a comprehensive description of lesion maturation. Lesions shrink between 24 h and 7 days post-ablation and then remain stable out to 6 weeks post-ablation. Periprocedural electrograms analysis yields good correlation with lesion durability and size.
DOI: 10.6084/m9.figshare.3528683.v1
title: Supplement 1. WinBugs code.

description: File List Diez_WinBugsCode.txt Description The file Diez_WinBugsCode.txt gives the basic code for fitting a multilevel model of the probability of occurrence and abundance conditional on covariates at the cell and grid levels, and including spatial error terms.
DOI: 10.6084/m9.figshare.12692690.v1
title: Donchev et al. COLUMNS

description: Long-form descriptions of the columns in DES370K, DES15K, and DES5M, as well as datatypes for each column, formatted each as a python dictionary.
DOI: 10.6084/m9.figshare.28839068.v1
title: Multimodal-Sentiment-Analysis-main.zip

description: Multimodal-Sentiment-Analysis-main
DOI: 10.6084/m9.figshare.28892276.v1
title: ITS Data supporting species identities, geographic distributions, and host associations from UNITE sequence data

description: Data to confirm species identities, geographic distributions, and host associations of UNITE sequence data with our reference dataset. Analyzed using ML phylogenetic analysis. Alignment file as .fasta, tree files as .pdf and .contree
DOI: 10.6084/m9.figshare.28999259.v1
title: Quantitative Assessment of Gene Expression Changes for Vascular Junction Proteins in Cerebral Microvessels from Murine Brain Slices Cultured for 12- and 24-hours.

description: Quantitative assessment of gene expression changes for the heterocellular adhesion molecule N-cadherin (N-Cad/Cdh2), tight junction adapter molecule Zonula Occludens-1 (ZO-1/Tjp1), and Junctional Adhesion Molecule-3 (JAM3) in cerebral microvessels of murine brain slices cultures for 0 hours, 12 hours, or 24 hours in oxygenated artificial cerebral spinal fluid (aCSF). <i>NOTE: Raw data in xls files will be uploaded shortly.</i>
DOI: 10.6084/m9.figshare.8848766.v1
title: Patient

description: This is the patient ID (randomly generated by the computer) in the dataset. It does not contain any personal / identifiable information.<br><br>This dataset support the manuscript "WAHDA: a Data Source to Promote the Impact of Checkup in Better Quality of Care", submitted to Scientific Data.
DOI: 10.6084/m9.figshare.24523561.v1
title: 18 Oct to 25 Oct.zip (csv format)

description: This set of data consists of electrical parameters for 8 electrical panels. Electrical parameters available are voltage, current, frequency, real power, reactive power, apparent power, power factor, and odd harmonics for current.
DOI: 10.6084/m9.figshare.27317043.v1
title: genome assemblies and annotations of 'Fuji' apple

description: Genome assemblies and annotations of ‘Fuji’ apple diploid genome (Fuji_Ral and Fuji_Del).
DOI: 10.6084/m9.figshare.7564028.v1
title: Additional file 6: of Molecular mapping of the Cf-10 gene by combining SNP/InDel-index and linkage analysis in tomato (Solanum lycopersicum)

description: Table S2. The KASP reaction system. (XLSX 10 kb)
DOI: 10.17632/45tbyx9r3n
title: The list of rotifer and micro-crustacean taxa identified in the inland waters of the regions of Russian Arctic

description: The list of species of zooplankton and meiofauna contains our own findings and literature data [2-8] chiefly for the period from the 1960-s to the 2010-s (1960-2017). Our own findings were obtained by analyzing samples of zooplankton, meiobenthos, and two cores of bottom sediments that we collected once in summer. This work was undertaken within the framework of the Freshwater Circumpolar Biodiversity Monitoring Program (CBMP-Freshwater) of CAFF. The work was performed in part as Federal Tasks to the Department of Animal Ecology of the Institute of Biology of Komi Science Centre of the Ural Branch of the Russian Academy of Sciences (АААА-А17-117112850235-2) (to EF and OK), to the Institute of Biophysics of the Federal Research Center “Krasnoyarsk Science Center” of the Siberian Branch of the Russian Academy of Sciences (project No. 51.1.1) and the Siberian Federal University (project No. FSRZ-2020-0006) (to OD). The paleolimnological part of this work was supported by grant from Russian Science Foundation (project 20-17-00135). L. Frolova and G. Nigamatzyanova were supported by the subsidy allocated to Kazan Federal University for the state assignment #671-2020-0049 in the sphere of scientific activities and by the Russian Foundation for Basic Research (grant 18-05-00406). The work was partly financially supported by the RFBR grant: 20-04-00145_а (to EF). References [1] E. Fefilova, O. Dubovskaya, L. Frolova, E. Abramova, O. Kononova, G. Nigamatzyanova, I. Zuev, E. Kochanova, Biogeographic patterns of planktonic and meiobenthic fauna diversity in inland waters of the Russian Arctic. Freshwater Biology (2020), 00:1‒17. [2] A.N. Kruglova, Zooplankton of the Kola River (the Barents Sea Basin), Proceeding of Karelian Scientific Centre of RAS. 4 (2009), 85‒89. (In Russian). [3] E.S. Makartseva, Zooplankton of lakes of different landscapes of Kola Peninsula, in: V.G. Drabkova, T.D. Slepukhina (Eds), Lakes of different landscapes of Kola Peninsula. Nauka, Leningrad. (1974), 143‒179. (In Russian). [4] E.V. Borutskiy, Crustacea. Freshwater Harpacticoida, Fauna of U.S.S.R., Vol. 3(4). Academy of Sciences of USSR Press, Moscow, Leningrad. (1952), 425 pp. (In Russian). [5] Hydrobiological study and fish agriculture application in lakes of the Extreme North, A.M. Gidalevich, M.T. Chernyakova (Eds), Nauka, Moscow. (1966) (In Russian). [6] Flora and fauna of the waterbodies of the European North (case study of lakes of Bolshezemelskaya tundra), M.V. Getsen (Ed), Nauka, Leningrad. (1978), 178 pp. (In Russian). [7] N.V. Vekhov, Life cycles of copepods of the Diaptomidae family (Crustacea, Calanoida) in waterbodies of the Subarctic Region in Europe, Ekologiya 3 (1988), 54-66. (In Russian). [8] N.G. Sheveleva, Diversity of planktonic fauna of Putorana plateau water bodies, in: A.A. Romanov (Ed), Bird and animal communities of the Putorana Plateau: studies and conservation, Rosselhozakademia Press, Moscow. (2006), 239‒251. (In Russian).
DOI: 10.6084/m9.figshare.21546324.v1
title: Data set - Oral manifestations associated with Novel Coronavirus Disease - 2019 (COVID -19): A questionnaire based hypothetical study

description: This data collection was done by means of a comprehensive survey questionnaire which was converted into an online format by using the QuestionPro® software, to enquire about the systemic and oral manifestation related symptoms of <strong>COVID-19</strong> patients. The questionnaire was in accordance with the current literature available about the novel SARS-CoV-2 and COVID-19. The Institutional Review Board of Imam Abdulrahman Bin Faisal University, Dammam, Kingdom of Saudi Arabia approved the study (IRB# 2020-02-220).
DOI: 10.17632/hgt5whhj6n
title: Clip #8

description: Road footage recorded using Logitech C525 webcam on Perodua Kancil 660 EX. The recorded steering wheel angle and vehicle speed are in degree and km/h, respectively. For synchronization, road footage, steering wheel angle, and vehicle speed data are recorded in 1/30 second step size.