cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21905463.v1
title: Unsupervised learning reveals interpretable latent representations for translucency perception

description: <strong>Contents:</strong> 1. Experiment_Stimuli.zip:<br> - The image stimuli used in psychophysical experiments (Exp 1, 2 and 3). <br> 2. Psychophysics_Data.zip:<br> - The human data of psychophysical experiments (Exp 1, 2 and 3). <br> 3. Trained_TAG_Model.zip:<br> - stylegan2-ada: the trained StyleGAN2-ADA model used to generated the image stimuli used in psychophysical experiments. - psp-encoder: the trained pixel2style2pixel (pSp) encoder network. <br> 4. TID_res1024_8k.zip: - Translucent Image Dataset: containing 8085 high-resolution (1024 x 1024) images of soaps.
DOI: 10.25387/g3.17065499.v1
title: Supplemental Materials for Yi et al., 2021

description: JD17 reference genome assembly results and genome annotation data<br>
DOI: 10.6084/m9.figshare.23940069.v3
title: A cross-institutional database of operational risk external loss events in Chinese banking sector 1986-2023

description: Nowadays the collection of operational risk data worldwide highly relies on human labour, leading to slow updates, data inconsistency, and limited quantity. There remains a substantial shortage of publicly accessible operational risk databases for risk analysis. This study proposes a new data collection framework by aggregating text mining methods to replace the exhausting manual collection process. The news about operational risk can be automatically collected from the web page, then its content is analyzed and the key information is extracted. Finally, the Public-Chinese Operational Loss Data (P-COLD) database for financial institutions is constructed and expanded. Each record contains 12 key information, such as occurrence time, loss amount, and business lines, offering a more thorough description of operational risk events. With 3,723 data records from 1986 to 2023, the P-COLD database has become one of the largest and most comprehensive external operational risk databases in China. We anticipate the P-COLD database will contribute to advancements in operational risk capital calculations, dependence analysis, and institutional internal controls.The <i>P-COLD-English ver.xlsx </i>is a cross-institutional database on operational risk data in China's banking sector, collected from publicly available sources and translated into English.The <i>P-COLD-Chinese ver.xlsx</i><i> </i>is a cross-institutional database on operational risk data in China's banking sector, collected from publicly available sources and recorded in Chinese.(The <i>P-COLD-English ver.xlsx</i> is the English-translated version of <i>P-COLD-Chinese ver.xlsx.</i>)The <i>Data</i><i> dictionary.xlsx</i> records the description of each field in P-COLD database.
DOI: 10.6084/m9.figshare.1564834.v1
title: Materialien Fachdidaktikseminar Quantenphysik

description: Das Materialpaket enthält die Zeitplanung, die Vorträge, die Aufgabenstellung sowie Literatur und Software des fachdidaktischen Seminars zur Quantenphysik.
DOI: 10.6084/m9.figshare.23580111.v1
title: CCF DATA

description: The dataset was provided by the CCF Big Data Competition and consists of high-definition remote sensing images of a city in southern China in 2015. This dataset is relatively small and contains five large-sized RGB remote sensing images with annotations, ranging in size from 3000×3000 to 6000×6000. The annotations in the dataset classify four types of objects, including vegetation (marker 1), buildings (marker 2), water bodies (marker 3), roads (marker 4), and others (marker 0). we randomly crop small 256x256 images from these coordinates and perform data augmentation.
DOI: 10.6084/m9.figshare.11895054.v1
title: Selected docking results

description: Best results obtained from docking pesticides cataloged by the WHO on the beta-lactoglobulin from Bos taurus.
DOI: 10.6084/m9.figshare.11467374.v4
title: Supporting information. Homonyms and hemihomonyms dataset: A source of errors in the Big Data Era.

description: Supporting InformationArticle: TAXONOMIC NOMENCLATURE IN THE BIG DATA ERABy: Sánchez-González, Jorge-Rubén & Herrero Rodríguez, Elena<br>It consists on a preliminary register of existing homonyms and/or hemihomonyms.
DOI: 10.6084/m9.figshare.14905089.v1
title: SM_Survey_UPSA-2020.csv

description: This data was collected through an online survey at the University of Professional Studies Accra(UPSA) in 2020.
DOI: 10.6084/m9.figshare.15173517.v4
title: RandomForest

description: Multi-fidelity tabular data for Random Forest hyperparameter space for HPOBench
DOI: 10.6084/m9.figshare.4872668.v1
title: Supplementary Material for: The Inhibitory Effect of Eplerenone on Cell Proliferation in the Contralateral Kidneys of Rats with Unilateral Ureteral Obstruction

description: <b><i>Background:</i></b> The unilateral ureteral obstruction (UUO) model not only induces renal interstitial fibrosis in the obstructed kidney but also induces injury in the contralateral kidney. We hypothesized that activation of the mineralocorticoid receptor (MR) may induce fibrosis in the early stage of UUO. <b><i>Methods:</i></b> Thirty male Sprague-Dawley rats weighting 200 ± 10 g were used in this study and randomly divided into 3 groups: a UUO group, a UUO and eplerenone group, and a sham group. The contralateral kidney and plasma were harvested for further study 10 days after surgery. <b><i>Results:</i></b> The level of plasma aldosterone (869.95 ± 55.851 pg/mL) was significantly higher in the UUO group than that in the sham group (478.581 ± 36.186 pg/mL vs. UUO, <i>p</i> &lt; 0.05). The infiltrated inflammatory cells (F4/80) and deposited collagens were increased significantly in the contralateral kidneys in the UUO group compared to those in the sham group, which were decreased by eplerenone. However, proliferating cell nuclear antigen was increased 2.47 times in the UUO group compared to the sham group in the contralateral kidney (<i>p</i> &lt; 0.01), and those changes are attenuated by eplerenone. The expression of SGK-1 protein and mRNA was upregulated in the contralateral kidney in the UUO group, which is suppressed by eplerenone treatment. NF-κB pathway effecters were also changed markedly in the contralateral kidney in the UUO group and partly reversed by eplerenone. <b><i>Conclusion:</i></b> Aldosterone induces inflammatory cell proliferation via the MR/SGK-1 and NF-κB pathways and eventually leads to fibrosis in the contralateral kidney.
DOI: 10.6084/m9.figshare.1489766.v2
title: Body Position Influences Which Neural Structures Are Recruited by Lumbar Transcutaneous Spinal Cord Stimulation

description: Data used in Danner et al. 2016.Peak-to-peak amplitudes of the responses to transcutaneous spinal cord stimulation in quadriceps, hamstrings, tibialis anterior and triceps surae in prone, supine and standing positions at 25 intensity levels (5 to 125 mA in 5 mA steps) of 10 subjects. There are four dimensional arrays in the mat file, ptpFirstResponses and ptpSecondResponses for the first and second responses, respectively. The first dimension is the musce group in following sequence left quadriceps, hamstrings, tibialis anterior and triceps surae followed by same muscles on right leg. The second dimension is the stimulation intensity, 5 mA in 5 mA steps to 125 mA. The third dimension signifies the subject. Finally, the forth dimensions describes the body position in following sequence: 1) supine, 2) standing and 3) prone.<br>Danner SM, Krenn M, Hofstoetter US, Toth A, Mayr W, Minassian K (2016) Body Position Influences Which Neural Structures Are Recruited by Lumbar Transcutaneous Spinal Cord Stimulation. PLoS ONE 11(1): e0147479. doi:10.1371/journal.pone.0147479
DOI: 10.6084/m9.figshare.14405987.v1
title: Supplementary Material for: Current Status and Quality of Machine Learning-Based Radiomics Studies for Glioma Grading: A Systematic Review

description: <b><i>Introduction:</i></b> Radiomics now has significant momentum in the era of precision medicine. Glioma is one of the pathologies that has been extensively evaluated by radiomics. However, this technique has not been incorporated into clinical practice. In this systematic review, we selected and reviewed the published studies about glioma grading by radiomics to evaluate this technique’s feasibility and its challenges. <b><i>Material and Methods:</i></b> Using seven different search strings, we considered all published English manuscripts from 2015 to September 2020 in PubMed, Embase, and Scopus databases. After implementing the exclusion and inclusion criteria, the final papers were selected for the methodological quality assessment based on our in-house Modified Radiomics Standard Scoring (RQS) containing 43 items (minimum score of 0, maximum score of 44). Finally, we offered our opinion about the challenges and weaknesses of the selected papers. <b><i>Results:</i></b> By our search, 1,177 manuscripts were found (485 in PubMed, 343 in Embase, and 349 in Scopus). After the implementation of inclusion and exclusion criteria, 18 papers remained for the final analysis by RQS. The total RQS score ranged from 26 (59% of maximum possible score) to 43 (97% of maximum possible score) with a mean of 33.5 (76% of maximum possible score). <b><i>Conclusion:</i></b> The current studies are promising but very heterogeneous in design with high variation in the radiomics software, the number of extracted features, the number of selected features, and machine learning models. All of the studies were retrospective in design; many are based on small datasets and/or suffer from class imbalance and lack of external validation data­sets.
DOI: 10.6084/m9.figshare.1609727.v1
title: Turning Point_Chinese Scientist Survey

description: Nature Publishing Group (NPG), part of Springer Nature, released Turning Point: Chinese Science in Transition, a White Paper which takes the pulse of China’s scientific research at a critical time in its development. It is the first report of its kind to be undertaken in China by a global publisher, drawing on quantitative and qualitative data NPG has recently gathered through interviewing and surveying more than 1,700 leading Chinese researchers.
DOI: 10.6084/m9.figshare.5139817.v1
title: Supplementary Material for: Integrative Assessment of Pretreatment Inflammation-, Nutrition-, and Muscle-Based Prognostic Markers in Patients with Muscle-Invasive Bladder Cancer Undergoing Radical Cystectomy

description: <b><i>Objective:</i></b> The present study evaluated the clinical relevance of an integrative preoperative assessment of inflammation-, nutrition-, and muscle-based markers for patients with muscle-invasive bladder cancer (MIBC) undergoing curative radical cystectomy (RC). <b><i>Methods:</i></b> The analysis enrolled 117 patients and the variables included age, body mass index (BMI), neutrophil-to-lymphocyte ratio, monocyte-to-lymphocyte ratio, platelet-to-lymphocyte ratio, modified Glasgow Prognostic Score (mGPS), prognostic nutritional index (PNI), Controlling Nutritional Status score, psoas muscle index (PMI), and peak expiratory flow (PEF). The correlations among the variables were evaluated and their prognostic values after RC were tested. <b><i>Results:</i></b> Three inflammation markers (ratios of blood cell counts) were positively correlated (<i>p</i> &lt; 0.0001). The PNI and the BMI were positively correlated (<i>p</i> = 0.04), although they were inversely correlated with the three inflammation markers (<i>p</i> &lt; 0.0001). Age was not significantly correlated with the inflammation markers and PMI, although older age was associated with lower PNI and lower PEF. The disease-specific survival was independently predicted by T4 tumor, positive N status, and decreased PNI. Overall survival was independently predicted by T4 tumor, mGPS, and pretreatment sarcopenia status. <b><i>Conclusions:</i></b> The inflammation-, nutrition-, and muscle-based markers would be useful risk assessment tools for MIBC.
DOI: 10.6084/m9.figshare.877918.v1
title: REFLEKSJE NA TEMAT PRACY „ANALIZA FINANSOWA EKONOMICZNEJ KONDYCJI NA PRZYKŁADZIE POLSKICH INSTYTUCJI” AUTORSTWA: D. KASPRZAK, D. ŚWIRKA, M. WIĄCEK

description: Recenzji została poddana praca “Analiza finansowa ekonomicznej kondycji na przykładzie polskich instytucji”, której celem było zaprezentowanie wyników badań przeprowadzonej analizy trzech wybranych instytucji reprezentujących różne branże gospodarki. Analiza ta została przeprowadzona przy użyciu Indeksu Kondycji Finansowej.
DOI: 10.6084/m9.figshare.11145260.v3
title: light field image stack

description: remapped light field image stack
DOI: 10.6084/m9.figshare.27924426.v2
title: Data for Shima Cave samples during Ice Age Termination II.xlsx

description: Stalagmite oxygen isotope data (δ<sup>18</sup>O and Δʹ<sup>17</sup>O) for samples (SM9, SM12, SM16 and SM17) from Shima Cave, Hunan Province, central China.
DOI: 10.6084/m9.figshare.28825631.v1
title: <b>Correction factor to harmonize Bouyoucos method in Peruvian Laboratories</b>

description: This database is part of masther degree project "Incertidumbre y calibración del método de sedimentación para determinación de distribución de tamaño de partículas utilizando aprendizaje estadístico" of National Agrarian University La Molina.
DOI: 10.6084/m9.figshare.21980225.v8
title: Observations regarding the sublethal effects (movement and protein content) of dsSec23 and dsVatpG on pre-aestivation cabbage stem flea beetles

description: Here is a presentation (Preliminary observations.pptx and also see the mp4 files for dsSec23 treated beetles) that contains pictures and video recordings of sublethal effects observations in pre-aestivation cabbage stem flea beetles that orally received dsSec23 or dsVatpG as well as raw movement speed measurement data (via Kinovea software) of such beetles 4 days post dsRNA treatments (in cm per second) (Movement 100 ng.xlsx). Also, the Bradford dsRNA cleaned.xlsx file contains raw data regarding Bradford measurements 7 days after dsRNA exposure.
DOI: 10.6084/m9.figshare.1572166.v1
title: Confocal Imaging files.rar

description: Confocal imaging raw files obtained using Leica sp8 confocal microscope. Fluorophores: STAT3-mTURQUOISE and anti-rabbit pSTAT3 (Y705)-Alexa594<br>
DOI: 10.6084/m9.figshare.21547125.v1
title: Chinese dwarf cherry [Cerasus humilis (Bge.) Sok.] polyphenol extract (OPE) promote osteoblastic differentiation in MC3T3-E1 cells and reduce ovariectomy-induced bone loss in rats via the calcium/AMPK signaling pathway

description: Osteoporosis (OP) is a systemic bone disease associated with aging and imbalance in bone metabolism. In this study, the osteoprotective activity of Chinese dwarf cherry (<em>Cerasus humilis)</em> polyphenol extract (OPE) was characterized <em>in vitro</em> and <em>in vivo</em>, and the osteoprotective mechanism was studied.
DOI: 10.6084/m9.figshare.28235786.v2
title: University Students' Continued Use of Survey Data for Generative AI.xlsx

description: The growing adoption of generative AI (GenAI) in education underscores the importance of identifying the factors that shape university students' intentions to sustain their use of this technology. Despite its growing adoption, limited research has investigated how the attributes of GenAI shape students' sustained usage intentions. Grounded in the Heuristic-Systematic Model and Means-End-Chain Theory, this study conducted an online survey of university students in mainland China through random sampling (time1, n = 823; time2, n = 712), explores how heuristic factors (anthropomorphism and likability) and systematic factors (perceived intelligence and AI compatibility) influence students' intention to continue using GenAI, with utilitarian and hedonic values serving as mediators. The findings indicate that anthropomorphism, likability, perceived intelligence, and AI compatibility have a positive impact on students' intention to continue using GenAI. Moreover, utilitarian and hedonic values serve as mediators, linking these attributes to behavioral intentions, highlighting the dual role of value perceptions in driving continued use. The study highlights the fear of AI as a negative moderating factor that weakens the direct effects of these attributes on intention, emphasizing the critical role of individual characteristics in shaping human-AI interactions. This study enhances the literature on human-AI interaction by combining heuristic and systematic cues with user value perceptions to clarify the mechanisms driving the adoption and continued use of GenAI. The findings offer theoretical and practical insights, emphasizing the need for thoughtful design of GenAI attributes to enhance its utility and user experience while addressing concerns related to fear of AI to promote long-term engagement.
DOI: 10.25420/britishmuseum.28350722.v1
title: English terminology diagram of the chhot hull

description: Diagram showing the English terms for the key elements of the chhot hull.
DOI: 10.6084/m9.figshare.26844025.v2
title: gene annotation of Pseudaspius leptocephalus

description: gene annotation of Pseudaspius leptocephalus
DOI: 10.6084/m9.figshare.20448513.v1
title: Metabarcoding libraries (bacteria; CS1, CS2 primers) from olive tree leaf samples

description: Bacterial pair-end metabarcoding libraries from the paper "Characterization of the olive endophytic community in genotypes displaying a contrasting response to <i>Xylella fastidiosa</i>".<br><b><i>Classification (Ctrl = controls):</i></b><b>SX25</b> FLD0097.FS3105PR01<br>SX25 Ctrl FLD0105.FS3105PR01Ctrl<br><b>SX27</b> FLD0113.AM2507SN02<br>SX27 Ctrl FLD0121.AM2507SN02Ctrl<br><b>SX29 </b>FLD0129.AM2507SN03<br>SX29 Ctrl FLD0137.AM2507SN03Ctrl<br><b>SX30 </b>FLD0145.FS1709PA02<br>SX30 Ctrl FLD0153.FS1709PA02Ctrl<br><b>SX31 </b>FLD0161.FS2407ML01<br>SX31 Ctrl FLD0169.FS2407ML01Ctrl<br><b>SX32 </b>FLD0177.LP2011ML01<br>SX32 Ctrl FLD0185.LP2011ML01Ctrl<br><b>SX61 </b>FLD0098.FG1505SP02<br>SX61 Ctrl FLD0106.FG1505SP02Ctrl<br><b>SX63 </b>FLD0114.FG1905UG01<br>SX63 Ctrl FLD0122.FG1905UG01Ctrl<br><b>SX65 </b>FLD0130.FG1905SP01<br>SX65 Ctrl FLD0138.FG1905SP01Ctrl<br><b>SX67 </b>FLD0146.FG10502BA01<br>SX67 Ctrl FLD0154.FG1502BA01Ctrl<br><b>SX69 </b>FLD0162.FG1905RU01<br>SX69 Ctrl FLD0170.FG1905RU01Ctrl<br><b>SX71 </b>FLD0178.FG1001BA02<br>SX71 Ctrl FLD0186.FG1001BA02Ctrl<br><b>SX73 </b>FLD0099.GL0103CO09<br>SX73 Ctrl FLD0107.GL0103CO09Ctrl<br><b>SX75 </b>FLD0115.GL0705CO13<br>SX75 Ctrl FLD0123.GL0705CO13Ctrl<br><b>SX77 </b>FLD0131.GL08050C16<br>SX77 Ctrl FLD0139.GL08050C16Ctrl<br><b>SX79 </b>FLD0147.GL08050C17<br>SX79 Ctrl FLD0155.GL08050C17Ctrl<br><b>SX81 </b>FLD0163.GL1912LV14<br>SX81 Ctrl FLD0171.GL1912LV14Ctrl<br><b>SX83 </b>FLD0179.GL1705LV20<br>SX83 Ctrl FLD0187.GL1705LV20Ctrl<br><b>SX85 </b>FLD0100.GL2902LQ01<br>SX85 Ctrl FLD0108.GL2902LQ01Ctrl<br><b>SX87 </b>FLD0116.GL0705CO10<br>SX87 Ctrl FLD0124.GLO705CO10Ctrl<br><b>SX89</b> FLD0132.LP1606GA01<br>SX89 Ctrl FLD0140.LP1606GA01Ctrl<br><br>
DOI: 10.6084/m9.figshare.25341472.v1
title: Supplementary Material for: Investigation of novel urinary biomarkers in hepatocellular carcinoma risk in a predominantly African American population.

description: Introduction
African Americans are at increased risk of hepatocellular carcinoma (HCC) compared to other racial and ethnic groups. We investigated the associations of four urinary biomarkers of prostaglandin E2(PGE-M), prostacyclin (PGI-M), and thromboxane (11dTxB2) synthesis and the ratio of PGI-M to 11dTXB2 with HCC risk in a cohort of predominantly African American population.

Methods
We conducted a nested case-control study (50 cases; 43 with HCC, 151 controls) in the Southern Community Cohort Study (SCCS), a large prospective cohort study including over 80,000 study participants of whom two-thirds are African Americans. Urine samples were collected at enrollment and subsequently analyzed to assess biomarker levels. Multivariable regression models adjusted for age, race, sex, BMI, smoking status, NSAID use, education level, income and alcohol consumption were used to assess the relationship between the biomarker and HCC risk. 

Results 
Only 11dTxB2 (OR=11.50; 95%CI [2.34-56.47] for highest tertile vs lowest tertile, p=0.004) and the PGI-M/11dTXB2 ratio of the second quartile (0.25-0.49) (OR=5.16; 95%CI[1.44-18.47];p=0.01) were significantly associated with increased risk of liver cancer. 

Conclusion
11dTXB2 and PGI-M/11dTXB2 ratio may be urinary markers of HCC risk, particularly among African Americans and future prospective studies are needed to evaluate this finding further and to develop accessible methods.
DOI: 10.6084/m9.figshare.26162269.v2
title: <b>A</b><b>global dataset of directional</b><b>migration</b><b>networks of migratory birds</b>

description: The migration of birds plays a crucial role in connecting different ecosystems, facilitatingthe spread of diverse pathogens, which poses a significant threat to public health. At present, the realtime monitoring of bird migration is growing. However, the extent of connectivity between migratory areas of birds remains uncertain.Herein, we conducted a systematic review ofChinese and English literature published between 1993 and 2023 to extract detailed spatiotemporal information on various bird species, which allowed us to identify migration times, starting points, terminations, and pathways of them at a subnational level, resulting in the creation of a global dataset of bird migration networks encompassing 42,844 geo-referenced records. These records cover 112 bird species and their 1,454 migratory routes across 189 countries or territories. Our dataset provides a comprehensive overview of the global distribution of bird migrations across different families, revealing the geographical patterns of diverse migration behaviors. This facilitates further investigations into the underlying drivers of bird migration, as well as alterations in migration routes and their impacts on ecosystems.
DOI: 10.6084/m9.figshare.7250357.v1
title: The first specimen of <i>Archaeopteryx</i> from the Upper Jurassic Mörnsheim Formation of Germany

description: From an initial isolated position as the oldest evolutionary prototype of a bird, <i>Archaeopteryx</i> has, as a result of recent fossil discoveries, become embedded in a rich phylogenetic context of both more and less crownward stem-group birds. This has prompted debate over whether <i>Archaeopteryx</i> is simply a convergently bird-like non-avialan theropod. Here we show, using the first synchrotron microtomographic examination of the genus, that the eighth or Daiting specimen of <i>Archaeopteryx</i> possesses a character suite that robustly constrains it as a basal avialan (primitive bird). The specimen, which comes from the Mörnsheim Formation and is thus younger than the other specimens from the underlying Solnhofen Formation, is distinctive enough to merit designation as a new species, <i>Archaeopteryx albersdoerferi</i> sp. nov., but is recovered in close phylogenetic proximity to <i>Archaeopteryx lithographica</i>. Skeletal innovations of the Daiting specimen, such as fusion and pneumatization of the cranial bones, well vascularized pectoral girdle and wing elements, and a reinforced configuration of carpals and metacarpals, suggest that it may have had more characters seen in flying birds than the older <i>Archaeopteryx lithographica</i>. These innovations appear to be convergent on those of more crownward avialans, suggesting that Bavarian archaeopterygids independently acquired increasingly bird-like traits over time. Such mosaic evolution and iterative exploration of adaptive space may be typical for major functional transitions like the origin of flight.