cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28730888.v1
title: Multicentric PMEX study data

description: The research was conducted to validate the PMEX questionnaire in Indian scenario for undergraduate students
DOI: 10.17632/nyjjmc2htd
title: Dataset: Forest edge landscape context affects mosquito community composition and risk of pathogen emergence

description: Full dataset accompanying the manuscript "Forest edge landscape context affects mosquito community composition and risk of pathogen emergence", iScience, doi.org/10.1016/j.isci.2024.111576
DOI: 10.6084/m9.figshare.7514093.v1
title: Relationship Between Standardized Precipitation Index (SPI) and the Fire Occurrence Reports (FOR) in Itatiaia National Park

description: ABSTRACT We evaluated fire foci data via environmental satellites, from Frontal Systems (FS) and South Atlantic Convergence Zone (SACZ) together with Standardized Precipitation Index (SPI) and Fire Occurrence Reports (FOR) in Itatiaia National Park (INP). SPI were computed with rainfall data from three stations in INP. SF and SACZ data were obtained via Climanálise. We applied independent multiple regression to FOR, SPI, SF and SACZ. Largest FOR occurred category in C class (81%), highest percentages during winter (57.2%) and spring (35.1%). The critical months to fire foci were July (17%), September (23.2%) and August (31.9%). Regardless of the season, FS (R2 = 0.75) were highlighted to SACZ (R2 = 0.43). SF conditioned 80% of variations between FOR and annual SPI index, while only 40% were due to SACZ.
DOI: 10.17632/5ybtjwpf3j
title: Uncropped Blots Griewahn et al.

description: Uncropped Western Blots (labelled) for the accepted manuscript Cell Reports  D-22-03386.
DOI: 10.6084/m9.figshare.19121816.v1
title: Supplementary Material for: Associations between gestational weight gain adequacy and neonatal outcomes in Tanzania

description: Introduction: Gestational weight gain (GWG) is associated with fetal and newborn health; however, data from sub-Saharan Africa are limited. Methods: We used data from a prenatal micronutrient supplementation trial among a cohort of HIV-negative pregnant women in Dar es Salaam, Tanzania to estimate the relationships between GWG and newborn outcomes. GWG adequacy was defined as the ratio of the total observed weight gain over the recommended weight gain based on the Institute of Medicine body mass index (BMI)-specific guidelines. Newborn outcomes assessed were: stillbirth, perinatal death, preterm birth, low birthweight, macrosomia, small-for-gestational age (SGA), large-for-gestational age (LGA), stunting at birth, and microcephaly. Modified Poisson regressions with robust standard error were used to estimate the relative risk of newborn outcomes as a function of GWG adequacy. Results: Of 7561 women included in this study, 51% had severely inadequate (&lt;70%) or inadequate GWG (70-90%), 31% had adequate GWG (90-125%), and 18% had excessive GWG (≥125%). Compared to adequate GWG, severely inadequate GWG was associated with a higher risk of low birthweight, SGA, stunting at birth, and microcephaly; whereas excessive GWG was associated with a higher risk of LGA and macrosomia. Conclusion: Interventions to support optimal gestational weight gain are needed and are likely to improve newborn outcomes.
DOI: 10.6084/m9.figshare.8598548.v1
title: Predicted rasters (.gri files) of 30 triatomine vectors

description: The data files contain .gri objects that contain the predicted relative probability of occurrence for 30 traitomine species (Chagas vectors). The files consist of the predicted probabilities (`predicted-maps-tgb-revision.grd`) and the respective lower (`predicted-cil-tgb-revision.grd`) and upper (`predcited-ciu-tgb-revision.grd`) confidence intervals. Each layer in the raster brick represents one species. <br>They can be read into R using command `raster::brick`. For example: <br>pred_maps sp::plot(pred_maps[["Panstrongylus.megistus"]])
DOI: 10.17632/89zsjn4wk3
title: Europe_Concurrent_Heatwave_and_Extreme_Sea_Level_Events

description: This is the Europe ERA5 reanalysis dataset pertaining to the following research paper: "Europe’s Coastal Communities Are Facing An Increasing Risk of Concurrent Heatwaves and Extreme Sea Levels in A Warmer World". It includes the temperature (https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=overview), total water level (https://cds.climate.copernicus.eu/cdsapp#!/dataset/sis-water-level-change-timeseries?tab=overview), and large-scale atmospheric variables (https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=overview and https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-pressure-levels?tab=overview). All data were re-gridded to 0.25°.
DOI: 10.17632/jnj76frh5y
title: Fresh frozen human cadavers for endovascular simulation | Experimental data

description: To investigate the feasibility of a fresh frozen human cadaver model for research and training of endovascular image guided procedures in the aorta and lower extremity. This assessment is based on our institute’s experiences throughout the use of six fresh frozen human cadaver torsos and 22 lower extremities. And focusses mainly on vascular patency and presence of atherosclerotic plaque. Data includes: S1 dataset: Baseline characteristics of body donors. Sex and age of the donated specimens. S2 dataset: Target vessel cannulation success. Table summarizing target vessel cannulation success in all specimens, including the visibility of the target vessel on angiography and visible calcifications. - Target vessel cannulation succes is defined as: successful cannulation of the artery of interest with guidewire. - Patent on angiogram is defined as: contrast-enhanced arterial lumen of the artery of interest. At least 5cm of the artery of interest should be visible. - Visible calcifications is defined as: moderate to severely calcified regions near the ostium of the target vessel visible on preprocedural computed tomography imaging. More background and guidance on this scoring is found in the supporting information of this article at Plos One (S1 Table and S2 Table).
DOI: 10.6084/m9.figshare.10273940.v1
title: Subtree extraction benchmarks

description: This data set demonstrates the difference in processing time between a DBTree-indexed version of a tree and a Newick version. For both versions, a varying number of randomly drawn tips, ranging from 10 to over 40k, is extracted as a subtree from the topology of the Open Tree of Life.<br>On small subsets, the difference is especially dramatic: where subtrees for dozens of taxa are extracted in less than a second from the DBTree version, the Newick tree takes over ten minutes to be processed. Much of the processing time for the latter is taken up simply by the Newick string parsing operation.<br>For large subsets, the difference is less dramatic. For example, for a subtree of over 40k taxa, the DBTree implementation is about twice as fast as the Newick/Dendropy implementation. However, the difference in processing time is now no longer due primarily to the Newick string parsing: the initial data reading step takes about 10 minutes, but the total operation takes over two hours.<br>For more information, see: https://github.com/rvosa/bio-phylo-forest-dbtree
DOI: 10.6084/m9.figshare.19368302.v1
title: File S5.xlsx

description: List of <i>C. albicans</i> and <i>C. glabrata</i> ortholog genes regulated in the host.
DOI: 10.17632/29dy6d38gh
title: Data for: Improving Creative Self-Efficacy and Performance through Computer-Aided Design Application

description: Works designs by students: a student engaged in the 3D-CAD
DOI: 10.6084/m9.figshare.7588628.v1
title: Data and R code for "Indirect effects on fitness between individuals that have never met via an extended phenotype"

description: R code and dataset to recreate analysis found in publication "Indirect effects on fitness between individuals that have never met via an extended phenotype"<br>The 4 csv files contain the 3 datasets and the pedigree. Hopefully from the file names it is quite obvious what is what. The text file is the R code, it requires the package MCMCglmm to be run.
DOI: 10.17632/9n864gnc99
title: Molecular screening of NEH rice germplasm

description: Molecular screening of NEH rice germplasm with GCP and fertility restoration markers
DOI: 10.6084/m9.figshare.3558975.v1
title: Appendix A. Sampling information for each tree-ring site.

description: Sampling information for each tree-ring site.
DOI: 10.17632/rvfm4m78g3
title: Realistic TRACE Input Model for 4-Loop PWR LOCA Analysis

description: Included are the TRACE steady state and transient restart input files for a Westinghouse 4-loop PWR LBLOCA analysis as described in:

 A. Wysocki and N. Capps, "A Realistic TRACE PWR LOCA Model with Application to High Burnup Analysis," Annals of Nuclear Energy (in progress), 2024.

The model is an improved version of the typpwr.inp model provided with the TRACE and SNAP code distributions, including the following main modifications:
- Replaced the original pipes and side junctions in the core/vessel region with a VESSEL component
- Split the lumped intact loop into 3 separate loops
- Split the VESSEL core region into two radial rings and 4 azimuthal sectors
- Modified the ECCS consistent with the OECD BEMUSE LBLOCA benchmark specifications
- Enabled CSS
- Enabled detailed fuel rod modeling options

Please cite the above mentioned paper in all publications that made use of this file.
DOI: 10.17632/vc7rpc6gtc
title: Dataset for PV Array in Mt. Hope T&TEC Location Trinidad and Tobago 2012

description: This research examined the PV module under Trinidad and Tobago’s climatic conditions. Based on the literature, the performance of PV modules varies with climate and one of the most significant factors in this variation is the operating cell temperature of the module. The literature shows several methods for calculating this temperature using environmental parameters. In keeping with the goals which are: 1. Identify any reduction in performance due to temperature in Trinidad. 2. Identify the existing models capabilities to predict cell temperature in Trinidad. 3. Determine the effect humidity has on the cell temperature in Trinidad. The data for the 2.2kW mono-Si system (LG 255S1C-G2 ) was taken by a sunny-boy inverter system in conjunction with a reference cell mounted in the POA. The thermocouples were place on the back surface, showing no variation of temperature across the surface, secured with a thermally conductive tape. The anemometer was placed on the windward side of the modules, which is north-east. Data was collected in a table like format to a connected computer in the building’s interior. They were located at the Trinidad and Tobago Electricity Commission building in Mt Hope. They were oriented Southward at a tilt of 11 o, keeping the position the same would negate any effects the roof surface or geographical location would have and these impacts would be encompassed in the power output. The effect of being on a sloped roof which the literature shows increases back surface temperature was accounted for by both installations being a flat roof, raised over 6” off the surface.
DOI: 10.6084/m9.figshare.7770941.v1
title: Corrected file for the data of Experiment 2 in "Testing the attentional dwelling hypothesis of attentional capture"Th

description: The compatibility effect was miscalculated in the original file and is now corrected<br><br>
DOI: 10.6084/m9.figshare.22317484.v3
title: Tripadvisor tourist review Chinese

description: This is the data set of Chinese reviews used to analyse the results from 'Identifying the role of intangible cultural heritage in distinguishing cities: A social media study of heritage, place, and sense in Guangzhou, China'.
DOI: 10.6084/m9.figshare.20103749.v1
title: Neuron Data from MFIAS

description: Raw Data of Neural activities by MFIAS in Fig. 3(a)-(e) in the paper of Multifocal fluorescence video-rate imaging of centimetre-wide arbitrarily shaped brain surfaces at micrometric resolution. <br>
DOI: 10.17632/8vsjk9jpdz
title: Native and introduced Australian grass (Poaceae) records

description: Cleaned and filtered Australian grass (Poaceae) occurrence records from the Atlas of Living Australia (ALA), downloaded 3 January 2020. The data file is in an R format (.RDS file). This can be converted and saved into a .csv file in R. I also assigned species photosynthetic pathway (either C3 or C4 photosynthesis) to each species in the data set.

I converted the cleaned record into species richness (the number of unique species in 100 x 100 km areas across Australia). I tied native and introduced C3 and C4 grass species richness to key environmental variables to build species distribution models. I expected native and introduced grasses to have similar responses to environmental gradients meaning native species richness patterns could provide a template for potential introduced species richness.
 
These records could be used for other SDM contexts (single-species or within States or Territories). Or for statistical analyses on the phylogenetic (species, generic) composition of grass records in Australia. The location tags on the records, however, provide use for assessing the geographic distribution of the records/species across Australia at different spatial scales and extents and with coupling to environmental data, as I did for these records. Nonnative = introduced (i.e. not native to Australia).
DOI: 10.6084/m9.figshare.21574860.v1
title: BCAA manuscript Table S4

description: Enrichment of TCA cycle intermediates from [13C16]palmitate following 10 minutes of incubation of the freshly isolated liver mitochondria from fed mice, following branched chain amino acid supplementation.
DOI: 10.6084/m9.figshare.5120551.v1
title: Supplementary Material for: Genotyping Error Detection in Samples of Unrelated Individuals without Replicate Genotyping

description: <i>Objective:</i> Identifying genotyping errors is an important issue in genetic research, yet it has been relatively less studied in samples consisting of unrelated individuals. In this article, we consider several models of genotyping errors, which were originally proposed for pedigree data, for unrelated population samples with single nucleotide polymorphism (SNP) genotype data. The mathematical constraints are investigated for detecting genotyping errors without resampling replicates or genotyping relatives. <i>Methods:</i> For the various proposed genotyping error models, we unveil the conditions under which the parameters are identifiable. These results are verified through applications to simulated and real SNP data. <i>Results:</i> We show that, with constraints, two particular models provide both identifiable error rate and allele frequencies of an SNP for unrelated population data. The simulation study shows that these two models present unbiased estimates for the allele frequencies. One of the models also gives an unbiased estimate for the genotyping error rate. <i>Conclusion:</i> While the Hardy-Weinberg equilibrium test can be used to detect genotyping errors, a key advantage of these models is the explicit estimates of genotyping error rates and allele frequencies. This work may help researchers to estimate error rates and to use the estimates in their analysis to increase power and decrease bias, without the extra work of genotyping family members or replicates.
DOI: 10.6084/m9.figshare.28771439.v1
title: HFHS Cav1 paper data

description: The entry of lipopolysaccharides (LPS) from the intestinal lumen to the circulation is associated with metabolic syndrome (MetS). We have reported that LPS is transcellularly transported from the jejunal lumen in the presence of luminal long-chain fatty acid (LCFA) via caveolin-1 (Cav1)-mediated endocytotic pathways. Here, we examined the effects of diets of varying FA composition on the MetS induction and LPS transport in murine jejunum.Male and female C57Bl6 wild type (WT) and global Cav1 knockout (KO) mice were fed a standard diet (SD), or one of 3 high fat-high sucrose diets enriched in saturated LCFA (LCD), medium-chain FA (MCD) and polyunsaturated FA (PUD) for 6 wks. FITC-LPS or FITC-dextran (FD4) m-to-s transport with transepithelial electrical resistance (TEER) was measured in Ussing chambers.MetS was predominantly induced in male WT LCD with increased portal venous LPS levels, but less induced in WT MCD and PUD or in KO. Interestingly, basal FITC-LPS and FD4 transport was increased in the jejunum of male WT LCD without TEER change, compared with WT SD, but not in KO LCD. The LCD-induced enhanced LPS and FD4 transports were abolished by luminal inhibitors of lipid rafts, CD36, or Src kinase. In vivo imaging demonstrated intracellular vesicular uptake of dextran and LPS in the jejunal villous enterocytes with absent paracellular staining in male WT LCD, but not in WT SD or KO LCD. In proximal colonic mucosa, there was no LPS or FD4 transport in WT SD or LCD.These results suggest that LCD constitutively activates Cav1-mediated endocytotic LPS transport in the small intestine, with consequent metabolic endotoxemia and MetS. Cav1-mediated LPS transport is a promising therapeutic target for diet-induced, LPS-associated MetS.
DOI: 10.21942/uva.14260064.v2
title: Ahead Brain 152017 - 3D reconstructions

description: A multimodal 3D reconstruction of the whole human brain at a 200 micrometer scale created by fusing ultra-high field MRI and light microscopy.<br>This repository includes the microscopy stains and MRI contrasts co-registered to the 200 um blockface image.<br><br>
DOI: 10.17632/45c2583kfm
title: LINF_130019400

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/tmt3fmmn9m
title: High risk of obstructive sleep apnea - Hospital

description: The clinical records of the patients complying with the selection criteria were reviewed. Socio-demographic data (age, sex, education level, marital status), medical data (past medical history, current medication, and bad habits) were collected, a general physical examination (body weight, height, body mass index, cervical and abdominal circumference), and an otorhinolaryngological examination were performed (septum deviation, turbinate hypertrophy, tonsil size, Friedman tongue position, size and shape of the uvula and palate, and Angle classification). Additionally, the results of Epworth and Berlin questionnaires were compiled, which are part of the routine assessment. These instruments are administered to all patients whatever the reason why they may come to the clinic. We use the Epworth Sleepiness Scale, Peruvian version (22), with a value more than 10 indicating somnolence, and the Berlin questionnaire in its Spanish version (23), which indicates a high risk for the OSA syndrome when it shows two or more out of three positive categories
DOI: 10.17632/zrs8kk9dvr
title: Broiler weights of Cobb Avian

description: This dataset consists of 166 weights and 1772 images of 600 Cobb Avian 48 male and female birds. Weighing and photographing were conducted daily for 45 days, capturing various views and ages. Chickens were weighed using a 10kg digital scale with 1g sensitivity. Images were captured using a Redmi 10 smartphone equipped with a Snapdragon 678 processor, 8GB RAM, 128GB storage, and Android 11. The research was carried out at the Department of Poultry Production, Faculty of Agriculture, Kafrelsheikh University.
DOI: 10.6084/m9.figshare.22323553.v1
title: Supplementary Material for: Glomangiomyoma of the Stomach

description: Glomus tumor (glomus cell tumor) is a rare, often benign neoplasm, which is in most cases seen as a solitary bluish nodule involving the nail beds. Solid glomus tumor, glomangioma, and glomangiomyoma are the three main histopathological variants. In this case report, we present the rarest subtype of a glomus tumor; glomangiomyoma, in an atypical location; the stomach. A 45-year-old female from Syria presented to the clinic with severe dizziness and left epigastric abdominal pain accompanied by melena. We performed a thorough clinical study, laboratory workup, upper gastrointestinal endoscopy, endoscopic ultrasound, CT scan, as well as macroscopic and microscopic histologic examination of the surgical specimen, in addition to the immunohistochemical staining. Although rare, gastric glomangiomyoma was diagnosed and a 4.5 × 3 × 3 cm soft tissue mass was resected from the gastric antrum, and no clinical or endoscopic evidence of recurrence was observed for the follow up duration of four years. Undiagnosed gastric lesion with unexplained symptoms should be further investigated and not be disregarded immediately. To the best of our knowledge, this is only the second report of an instance of gastric glomangiomyoma.
DOI: 10.17632/dx5w79vxcx
title: Dataset of low rank coal pyrolysis to liquid fuel

description: The main equipment used consisted of a reactor made of Pyrex glass, a microwave oven, and a distillation column with a bubble-cap tray. Initially, 150 g of coal of a certain particle size was prepared: promoter and catalyst with a certain ratio. Operating conditions at atmospheric pressure with operating variables as follows: reaction temperature between 570-650℃ (increase 10℃); microwave input power is 0 - 800 W (increase by 75 W); pyrolysis time 15-135 minutes (increase every 15 minutes). The coal particle sizes are 4, 16, 40, 80, 100, 150, and 200 mesh. The liquid fuel obtained is weighed and characterization is carried out.
DOI: 10.6084/m9.figshare.25801171.v1
title: Data Sample Set - Methodology.docx

description: Datatset for the systematic review of Internet Memes
DOI: 10.4121/13213826.v1
title: Simulation Models used in PhD Dissertation: Simulating Human Routines

description: The doctoral dissertation ‘Simulating Human Routines: Integrating Social Practice Theory in Agent-Based Models’ used several simulation models and created a simulation framework. This document gives an overview of where these models are found. The models are stored in one place to avoid confusion about the most recent model. The models are stored in GitHub to enable fast-updating, version history and collaboration. <br>
DOI: 10.6084/m9.figshare.21407094.v1
title: Data from Does shading on great argus <i>Argusianus argus</i> feathers create a three-dimensional illusion?

description: Full data set
DOI: 10.6084/m9.figshare.24282883.v1
title: Contig size files for supplementary figures

description: Nuclear and organellar genomes can evolve at vastly different rates despite occupying the same cell. In most bilaterian animals, mitochondrial DNA (mtDNA) evolves faster than nuclear DNA, whereas this trend is generally reversed in plants. However, in some exceptional angiosperm clades, mtDNA substitution rates have increased up to 5000-fold compared with closely related lineages. The mechanisms responsible for this acceleration are generally unknown. Because plants rely on homologous recombination to repair mtDNA damage, we hypothesized that<b> </b>mtDNA copy numbers may predict evolutionary rates, as lower copy numbers may provide fewer templates for such repair mechanisms. In support of this hypothesis, we found that copy number explains 47% of the variation in synonymous substitution rates of mtDNA across 60 diverse seed plant species representing ~300 million years of evolution. Copy number was also negatively correlated with mitogenome size, which may be a cause or consequence of mutation rate variation. Both relationships were unique to mtDNA and not observed in plastid DNA. These results suggest that homologous recombinational repair plays a role in driving mtDNA substitution rates in plants and may explain variation in mtDNA evolution more broadly across eukaryotes. Our findings also contribute to broader questions about the relationships between mutation rates, genome size, selection efficiency, and the drift-barrier hypothesis.