cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6k92byyrzp
title: Harmful and harmless soil-dwelling fungi indicate microhabitat suitability for off-host Ixodid ticks

description: R-project containing all data and code associated with the manuscript "Harmful and harmless soil-dwelling fungi indicate microhabitat suitability for off-host Ixodid ticks" (doi:10.3390/microorganisms12030609).

Abstract: Following blood meals or questing bouts, hard ticks (Ixodidae) must locate moist off-host microhabitats as refuge. Soil-dwelling fungi, including entomopathogenic Beauveria bassiana (Bb), thrive in moist microhabitats. Working with six species of ixodid ticks in olfactometer bioassays, we tested the hypothesis that ticks avoid Bb. Contrary to our prediction, nearly all ticks sought, rather than avoided, Bb-inoculated substrates. In further bioassays with female black-legged ticks, Ixodes scapularis, ticks oriented towards both harmful Bb and harmless soil-dwelling fungi, implying that fungi—regardless of their pathogenicity—signal habitat suitability to ticks. Only accessible Bb-inoculated substrate appealed to ticks, indicating that they sense Bb or its metabolites by contact chemoreception. Bb-inoculated substrate required ≥24 h of incubation before it appealed to ticks, suggesting that they respond to Bb metabolites rather than to Bb itself. Similarly, ticks responded to Bb-inoculated and incubated cellulose but not to sterile cellulose, indicating that Bb detection by ticks hinges on the Bb metabolism of cellulose. 2-Methylisoborneol—a common fungal metabolite with elevated presence in disturbed soils—strongly deterred ticks. Off-host ticks that avoid disturbed soil may lower their risk of physical injury. Synthetic 2-methylisoborneol could become a commercial tick repellent, provided its repellency extends to ticks in diverse taxa.
DOI: 10.17632/2gfrt2k7cp
title: Dataset - Probability of suspension for nonuniform sediment

description: The probability of suspension for nonuniform sediment is an important parameter in mechanics of sediment transport, which is often used in the governing equations and boundary conditions of mathematical models. There were few theoretical research and experimental data on suspension probability, especially for nonuniform sediment. We investigates suspension probability for nonuniform sediment in turbulent flow. From the dynamic viewpoint, probability for sediment suspension was considered as one that the instantaneous lift force at the bottom is greater than the effective gravity of particles. Similarly, probability for sediment suspension is defined as one that the instantaneous upward velocity is greater than the settling velocity of particles. Assuming that the instantaneous longitudinal and vertical velocities near the bottom obey normal distribution, two probability expressions for any kth fraction of nonuniform suspended sediment are derived. An experimental method for the probabilities of sediment motion is proposed and used to flume experiments with uniform and nonuniform sediment. Then the formulas for probability of sediment suspension are obtained with coefficients determined by the experimental data on uniform suspended load. The calculated values from both proposed formulas agree well with the experimental data on nonuniform suspended load, showing high accuracy of the formulas. The datasets of suspension probability experiments for uniform and nonuniform sediment are uploaded as follows.
DOI: 10.17632/dztyr22chx
title: DesignScrum – An Agility Educational Resource Powered by Creativity

description: Dataset obtained in each survey and participant to know the level of learning in agile and creative project management after using the DesignScrum teaching resource. In addition, "Appendix_I-Surveys_provided_to_participants" is included, which includes the different surveys used without completing them and "Appendix_II Components_and_elements_of_educational" which shows comparative tables with greater detail on the components and elements included in the different educational resources presented in the research article.
DOI: 10.17632/zs5nb26t4z
title: LINF_060016200

description: ODA-DC domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hxxskzhcmm
title: LINF_060017200

description: BRCT domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xfcmb6b4ft
title: Analytical_Piezoresistivity_SFRCS

description: Closed-form solutions of the electrical conductivity and piezoresistivity of CNT/based composites
DOI: 10.17632/64shh39z76
title: scRNAseq data for Filaggrin deficiency in mice alters the early life CD4+ T cell response to skin commensal bacteria Gonzalez et al

description: Filaggrin deficiency in mice alters the early life CD4+ T cell response to skin commensal bacteria

Filaggrin mutations underlie ichthyosis vulgaris and increased risk of atopic dermatitis, conditions typified by disruption of the skin microbiome and cutaneous immune response. Yet, it remains unclear if neonatal skin barrier compromise due to filaggrin deficiency alters the quality of commensal-specific T cells and the functional impact of such responses. To address these questions, we profiled changes in the skin barrier and early cutaneous immune response of neonatal C57BL/6 Flg-/- and WT mice using scRNAseq, flow cytometry and other modalities. Flg-/- neonates showed little alteration in transepidermal water loss or lipid or corneocyte related gene expression. However, they demonstrated increases in barrier disruption genes, epidermal dye penetration and numbers of skin CD4+ T cells. Using an engineered strain of Staphylococcus epidermidis (S. epi-2W) to study the response to neonatal skin colonization, we found that commensal-specific CD4+ T cells were skewed in Flg-/- pups towards effector rather than regulatory T cells. This altered response persisted into adulthood, where it was typified by Th17 cells and associated with increased susceptibility to imiquimod-induced skin inflammation. Thus, subtle but impactful differences in neonatal barrier function in Flg-/- mice are accompanied by a skewed commensal-specific CD4+ response, with enduring consequences for skin immune homeostasis.

Our goal was to analyze epidermal subsets in the skin of neonatal wildtype and filaggrin deficient mice colonized with Staphylococcus epidermidis

Mice were colonized with Staphylococcus epidermidis D7/10 of life, harvested D12. Skin was harvested and digested with trypsin to enrich for epidermal cells before single cell RNAseq was performed. JRG01 is cells from WT mice and JRG02 is cells from Flg-/- (filaggrin KO) mice . 

Specs: mRNA, paired-end, NovaSeq 6000, Paired end (28,8,0,91) cycling condition, S2 flowcell Novaseq 6000 version1.5 kit, Chromium Single Cell 3' Reagent Kits V3, Cell Ranger v 3.0.2, mm10
10x Genomics output files: barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz
DOI: 10.17632/dt7fzs4ry3
title: Raw experimental data from Gas Hydrate Autoclave

description: Raw experimental data from Gas Hydrate Autoclave
DOI: 10.17632/fwsm4r4zsn
title: Detrital zircon data of Zhenbeitai site, nothern Chinese Loess Plateau
DOI: 10.17632/p7k6jg3pym
title: Burkholderia gladioli_Pseudomonas alliivorans_Genome Annotation

description: Genome annotation showing all genes with defined roles under various subsytem features present between strains of Burkholderia gladioli, 20TX0148 and ATCC 12048 (type strain), and strains of Pseudomonas alliivorans, 20TX0027 and 20GA0068 (type strain).

Presence of the gene is denoted by '+' and absence by '-'.
DOI: 10.17632/zgy5twwbfz
title: Kinetics of methanethiol oxidation by oxygen under aqueous conditions

description: This dataset contains all the data used in 'Kinetics of Methanethiol Oxidation by Oxygen under Aqueous Conditions,' including experimental conditions and solution compositions.
DOI: 10.17632/5pwykdf8fr
title: Directed evolution of orthogonal transcription engine for programmable gene expression in eukaryotes

description: This data set contains fold induction for fluorescence expression in saccharomyces cerevisae and HEK293T cells under the control of fusion enzymes composed of T7 RNA polymerase and capping enzyme NP868R variants. Figure 1c - Characterization of evolved variants of NPT7 relative to wild-type after rounds of selection. Fold induction of reporter expression following galactose induction. Figure 1f - Characterization of reporter expression using graded galactose induction for WT NPT7, v433 and v443. For Figure h) Reporter expression under the control of the Gal promoter assayed both integrated in the genome as well as encoded as a multi-copy yeast plasmid. For Figure 2b - Characterization of all reporter expression for both v433 and v443 strains. Figure 2d - Reporter expression from mutant T7 RNAP promoters shows a graded response consistent with the predicted strength of the promoters. Reporter expression from mutant T7 RNAP promoters shows a graded response consistent with the predicted strength of the promoters. Figure 2f- ) Relative expression of each fluorescent cargo relative to BFP for both v433 and v443 strains. Figure 3b - Characterization of all six v443 variants activity against the panel of six reporter constructs. Figure 4b- Activity of WT NPT7, v433 and v443 were characterized in HEK293T cells after transfection with each reporter plasmid.
DOI: 10.17632/pdgczjwmhd
title: Dataset of the first de novo transcriptome assembly of of Typhonium flagelliforme

description: The RNA-seq data was collected from three bulk sections of the leaf of keladi tikus (Typhonium flagelliforme), representing a comprehensive set of transcriptome data from the primary, secondary, and tertiary tuber produced by six-month-old plants.
DOI: 10.17632/m69nbt37tz
title: Bulk port routing models' dataset and solutions

description: The data include:
1- The routes and demands' instances tested,
2- The results of the routing models,
3- Rk subsets of routes.
DOI: 10.17632/3v2vbkkh4y
title: Data for: Ore-forming fluid source of the orogenic gold deposit: implications from a combined pyrite texture and geochemistry study

description: Appendix S2. Original 34S/32S ratios of pre-ore stage and ore stage pyrite.
DOI: 10.17632/yjw95wtcdy
title: Data about statistical problem-solving process in Indonesian Elementary School Textbook

description: This data concerns the distribution of statistics content and the relative emphasis on statistical problem-solving process in the latest curriculum elementary mathematics textbooks in Indonesia.
DOI: 10.17632/ytst4kss9p
title: Fidgety Philip and the Suggested Clinical Immobilization Test: Annotation Dataset & HMovements Automated Movement Detection Algorithm

description: ANNOTATION DATASET To facilitate ‘structured behavioral observations’ in clinical practice, we are interested in analyzing movement patterns, mainly voluntary and involuntary motions, during sitting. We developed a clinical protocol for analyzing characteristics of voluntary movements during sitting with the goal to capture disorder specific movement patterns and contribute to the phenotypic characterization of H-behaviors. To enhance our understanding, we conducted this phenotyping exercise independent of discipline-related boundaries and applied a pictogram guided-phenotyping language (PG-PL). Phase 1, Step 1: Annotation/analysis concept naïve research assistants (RAs) were trained. They then annotated three original Fidgety Philip cartoons and were instructed to ‘describe, but not interpret’. The dataset contains RAs' annotations of the cartoons. Phase 1, Step 2: RAs then annotated snapshots from suggested clinical immobilization tests (SCIT) to work out the distinction between ‘interpretive’ and ‘neutral, non-interpretive’ PG-PL descriptions in the analysis of snapshots from the SCIT with free-hand and then PG-PL annotations. The dataset contains RAs' free-hand and pictogram annotations of 12 SCIT snapshots. Phase 2: The goal of this phase was to apply the PG-PL to SCIT videos and to develop the first machine learning algorithm for automated movement detection. The dataset contains RAs' pictogram annotations of 1-minute long SCIT video clips. The data are available in raw and processed formats.​ HMOVEMENTS: AUTOMATED MOVEMENT DETECTION ALGORITHM The automated movement detection algorithm also is called "HMovements." This algorithm is available for download within this dataset. See the User Guide for instructions on using the algorithm. Note that the algorithm cannot be used on a Mac.
DOI: 10.17632/j84h6nym3n
title: Data for: Expression of long non-coding RNA SFTA1P and its function in non-small cell lung cancer

description: This dataset contains TCGA data for lung cancer and qRT-PCR data for tissue samples.
DOI: 10.17632/6nvpw22zfk
title: Versteegh et al. Rimicaris hybisae CNS isotopes

description: Gut content and stable isotope data on Rimicaris hybisae from Von Damm Vent Field at the Mid-Cayman Rise, showing that central and peripheral assemblage of these shrimp differ in isotope composition and source of nourishment.
DOI: 10.17632/3b3k3vrvpt
title: Data & Resources: Evaluating the Ability of Spatial Indicators to Classify Fish Stock Status

description: This repository contains all data and code to reproduce results, tables, and figures. The repository can also be cloned from https://github.com/peterjosephkidd/spatind_paper1. 

Abstract
A positive relationship between fish abundance and spatial distribution suggests that indicators of spatial distribution could be used as proxies of abundance and stock status. This study evaluated the ability of 10 spatial indicators to classify the health status of 25 data-rich stocks, identifying the best performing indicators and the conditions that influence their performance using a combination of machine learning techniques. Spatial indicators were able to detect health status better than a random classifier for the majority of stocks studied. The occupancy and aggregation indicators showed the best overall performance, suggesting that years of healthy stock status were often associated with presence in more survey hauls or more evenly distributed fish density. However, indicator performance depended on the source of survey data used and varied stock-by-stock. Explanations of these findings are provided and future research is suggested to further explore the impact of survey design and environmental variables. Our findings highlight the potential for spatial indicators to improve the assessment of category 5 and 6 data-limited stocks managed by the International Council for the Exploration of the Seas (ICES).

Data
The data used to calculate spatial indicators is downloaded from ICES Database of Trawl Surveys (DATRAS). This repository contains the DATRAS data downloaded and used within this study. Redownloading data from DATRAS may result in changes in outputs due to retrospective corrections/additions to the data. It is therefore advised that users intending to replicate this papers findings use the DATRAS data provide in this repository. 

Software
Reference to software used to complete this work is recorded in the PckgBibReport.html file
DOI: 10.15468/dl.vcpqpk
title: Occurrence Download

description: A dataset containing 147168 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-106.59739 28.24827,-105.18512 28.24827,-105.18512 28.99218,-106.59739 28.99218,-106.59739 28.24827))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 147168 records from 329 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001577-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hscd63w38c
title: The efficiency of handling transport orders

description: The results clearly demonstrate that orders completed with regular carriers are, on average, 30-40% less time-consuming. This efficiency is largely due to the elimination of steps like posting routes on the transport exchange, searching for carriers, verifying their reliability, and negotiating rates.
DOI: 10.17632/6c4nnvhyrp
title: Mindful Caring

description: Pre-course and post-course questionnaire results from Mindful Caring workshop participants.
Pre-course and post-course questionnaire.
DOI: 10.17632/8fgp93zkyv
title: Supplementary figure 1

description: Active, Disease active in the past 6 months
Stable, Non-progressive disease
Controls, Healthy controls
DOI: 10.17632/sxf8429w9g
title: Data for: Evaluation of the integrated riparian ecosystem response to future flow regimes on semiarid rivers

description: This dataset includes: 1) Description of 81 scenarios that were used to represent a continuum of potential changes in the hydrologic regime away from the baseline condition. 2) Synthetic flow duration curves for the 81 scenarios. There are tabs for both the Green River (USGS gage at Jensen Utah) and Yampa River (at Deerlodge Park). 3) The predicted change in plant presence and cover away from the baseline condition for each of the scenarios. 4) Flow duration curves for the three projected flow scenarios for the Yampa River along with the annual peak discharge data used to quantify the 2-yr, 3-yr, and 20-yr recurrence interval floods.
DOI: 10.17632/b93nzyh5vb
title: Data for: Mussel periostracum as a high-resolution archive of soft tissue δ13C records in coastal ecosystems

description: This file corresponds to the data used in Figures 3-6.
DOI: 10.17632/pj6y8wvjw6
title: Shortness of human resources for intensive care in Colombia

description: This database shows the number of hospital/ICU beds in Colombia by the department for 2018. Accordingly, we were able to discriminate the number of beds by ward and to design a map of the density of adult/pediatric ICU beds for publication.
DOI: 10.17632/hhg55xtvcz
title: Data for: The organic, inorganic and isotope geochemistry of the Holocene sapropel units in the Sea of Marmara and their Paleoceanographic significance

description: Data include in the three tables below are new in this research. The isotopic analyses of nitrogen (d15N) and organic carbon (d13Corg), together with total nitrogen (TN), and total organic carbon (TOC) were carried out using Vario Microcube Elemental Analyzer (E.A.) connected to an Isoprime 100 isotope ratio mass spectrometer (IRMS). Mo and Mn concentrations were measured on sediments, using Perkin Elmer NexION 350 Inductively Coupled Plasma Mass Spectrometer ( ICP-MS). Grain size analyses were performed after treatment for removal of carbonate, amorphous metal oxides, and silica, using a Malvern Mastersizer S equipment. Skewness sorting, and Mean grain size were determined using the Malvern software.
DOI: 10.17632/9xrw2jjrbr
title: FeynGrav Libraries

description: Libraries for FeynGrav.
The library contains Feynman's rules for matter (up to the fifth order) and general relativity (up to the third order). Only minimal couplings to gravity are included. 
Rules for matter are presented for scalars, Dirac fermions, vectors, and Yang-Mills SU(N). The scalar sector includes a scalar field potential.
DOI: 10.17632/m2chwdb654
title: FEDMIX: Neutron transmission functions and lumped averaged cross-sections from standardized evaluated neutron data

description: Abstract The FEDMIX code is used for modeling the neutron transmission and self-indication experiments to be performed on isotope mixture samples. The world-wide accepted evaluated neutron data files (ENDF/B, KEDAK, etc.) can be used as an outgoing data base. The statistics of group-averaged cross-sections and functionals in the unresolved energy region are facilitated and applied to the fitting of average resonance parameters to the poorly resolved experimental data. Title of program: FEDMIX Catalogue Id: ABLF_v1_0 Nature of problem Group-averaged functionals are calculated from evaluted neutron data. The fluctuation error of functionals are calculated in the unresolved energy region and used in the fitting of average resonance parameters to the measured group-averaged cross-sections. Versions of this program held in the CPC repository in Mendeley Data ABLF_v1_0; FEDMIX; 10.1016/0010-4655(89)90020-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/nvcgn5zhr7
title: Data for: STRUCTURAL REFORMS, ANIMAL SPIRITS AND MONETARY POLICIES

description: This is the Matlab code used in simulating the model
DOI: 10.17632/3x4kym64h5
title: Data for: Endoscopic ultrasound-through-the-needle biopsy in pancreatic cystic lesions A multicenter study

description: Raw data collected only for our Institute (ISMETT) for the article: Barresi L, Crinò SF, Fabbri C, Attili F, Poley JW, Carrara S, Tarantino I, Bernardoni L, Giovanelli S, Di Leo M, Manfrin E, Tacelli M, Bruno MJ, Traina M, Larghi A. Endoscopic ultrasound-through-the-needle biopsy in pancreatic cystic lesions: A multicenter study. Dig Endosc. 2018 Nov;30(6):760-770. doi: 10.1111/den.13197. Epub 2018 Jul 5. PubMed PMID: 29808529.
DOI: 10.17632/prwrvr6ts6
title: “Sound Resonance and Wave Properties in Gases and Liquids Investigating the Nature of Soundwaves Formula Extension“

description: Our research is an attempt to derive mathematical formula to describe the state of a system created by 
to or more waves resulting in a shockwave production 
The shockwave produced is a carrier of an energy that can be used for motion in gases and liquids 
To be able to utilize this energy we must be able to describe the state of a system of two or more waves at any 
given time thus deriving a formula that links energy produced to the component characteristics of the wave e.g 
frequency amplitude etc
A mathematical model is used which presents a system of waves as a sum or difference of two vectors 
which is the resulting vector or a shockwave It is a model that has been obtained after using detailed analysis 
of both longitudinal and transverse waves
DOI: 10.17632/8v5ssychvk
title: Automatic Code Generation based on Modeling Systematic Literature Review

description: Systematic literature review of automatic code generation approaches based on modeling
DOI: 10.17632/48yjw2szdh
title: Data of artile "X-chromosome-linked miR-542-5p as a key regulator of sex disparity in rheumatoid arthritis by promoting Th17 differentiation"