cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9wpvypzj9y
title: electroMicroTransport v2107: Open-source toolbox for paper-based electromigrative separations

description: Paper-based electromigrative separations have recently gained relevance due to the rise of paper-based microfluidic devices and their combination with electrophoretic methods, used for many different analytical applications [1]. A new version of the open source toolbox electroMicroTransport for the numerical solution of electromigrative separations is presented, now featuring support for porous substrates, like paper, nitrocellulose and other materials used in paper-based microfluidics. This new version is based on a novel mathematical model for these phenomena recently published by our group. Similar to its previous versions, the toolbox was implemented using OpenFOAM®, meaning that it features native 3D problem handling, support for parallel computation, and a GNU GPL license. This new version of electroMicroTransport includes full support for electroosmotic flow and the novels mechanical and electrical dispersion effects. It is now integrated with a well-recognized electrolyte database with its own management utility, and also includes a renewed algorithm for computing and controlling the electric current drainage in arbitrary surfaces. Moreover, for the first time electroMicroTransport is available for installation as a Docker image, which means that it is able to correctly run on any operating system. Finally, new tutorial examples and a user manual are provided. This new version of electroMicroTransport will enable efficient and reliable numerical prototypes of paper-based electromigrative separations to boost the continuous growth of paper-based microfluidics.
DOI: 10.3535/g88-qdy-l7x
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21505060.v2
title: Transfer Learning of Individualized Treatment Rules from Experimental to Real-World Data

description: Individualized treatment effect lies at the heart of precision medicine. Interpretable individualized treatment rules (ITRs) are desirable for clinicians or policymakers due to their intuitive appeal and transparency. The gold-standard approach to estimating the ITRs is randomized experiments, where subjects are randomized to different treatment groups and the confounding bias is minimized to the extent possible. However, experimental studies are limited in external validity because of their selection restrictions, and therefore the underlying study population is not representative of the target real-world population. Conventional learning methods of optimal interpretable ITRs for a target population based only on experimental data are biased. On the other hand, real-world data (RWD) are becoming popular and provide a representative sample of the target population. To learn the generalizable optimal interpretable ITRs, we propose an integrative transfer learning method based on weighting schemes to calibrate the covariate distribution of the experiment to that of the RWD. Theoretically, we establish the risk consistency for the proposed ITR estimator. Empirically, we evaluate the finite-sample performance of the transfer learner through simulations and apply it to a real data application of a job training program. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.21821229.v1
title: UNC Assay Data

description: Data from 17 subjects (with one file per subject) from the University of North Carolina (UNC) HIV Cure Center in Chapel Hill, North Carolina.
DOI: 10.6084/m9.figshare.27433893.v1
title: Export potential of the agricultural-industrial complex of South of Russia in the modern context of the global wheat market development

description: The table shows statistics on the agro-industrial complex of the South of Russia in 2020-2022 by region, including:- Balanced financial result of crop production organizations, billion rubles.- Profitability of sold goods of crop production organizations, %- Yield of grain and leguminous crops (in weight after processing), c/ha- Gross grain harvest (in weight after processing), million tons- Average annual number of people employed in agriculture, thousand people.- Export of food products and agricultural raw materials, billion dollars.- Import of food products and agricultural raw materials, billion dollars.В таблице приведена статистика АПК Юга России в 2020-2022 гг. по регионам, включая:- Сальдированный финансовый результат организаций растениеводства, млрд руб.- Рентабельность проданных товаров организаций растениеводства, %- Урожайность зерновых и зернобобовых культур (в весе после доработки), ц/га- Валовой сбор зерна (в весе после доработки), млн т - Среднегодовая численность занятых в сельском хозяйстве, тыс. чел.- Экспорт продовольственных товаров и сельскохозяйственного сырья, млрд долл.- Импорт продовольственных товаров и сельскохозяйственного сырья, млрд долл.
DOI: 10.17632/p7h5hccsbt
title: Geochemistry and mineralogy coupling reveals the Fe-S cycle in a receding methane seep (Supplementary data)

description: Receding methane seep is a potential hotspot to investigate the iron and sulfur cycle in marine sediment but these processes deciphered by geochemical and mineralogical data are still unclear. Here, we studied a core with a length of 14 m sampled from the Shenhu area, South China Sea, via multiple geochemical and mineralogical methods, we found twice methane seep activities. Accelerator mass spectrometry 14C dating and the carbon and oxygen isotopic analyses for planktonic foraminifera indicate successive sedimentation from Marine isotope stages 3 (MIS3) to 1 (MIS1). The low correlations between CRS and total organic carbon (TOC) and δ13CTOC indicate that organoclastic sulfate reduction is not the dominant biogeochemical reaction in this core. The increasing contents of CRS and the mean diameter of framboid in several depth intervals and the extremely negative δ34S value of both CRS and hand-picked pyrite reveal that the two SMTZs once situated near the seafloor. The vast ES and framboid goethite (pyrite pseudomorphs) that distribute throughout the core implied that the methane seep activity had subsided. Moreover, the special intermediate species further confirmed the ongoing pyrite oxidation. Therefore, our results provide a unique reference to interpret the Fe-S cycle in methane seep.
DOI: 10.17632/rc6rfg45n5
title: MYCN recruits the nuclear exosome complex to RNA polymerase II to prevent transcription replication conflicts

description: The MYCN oncoprotein drives the development of numerous neuroendocrine and pediatric tumors. Here we show that MYCN interacts with the nuclear RNA exosome, a 3'-5' exoribonuclease complex, and recruits the exosome to its target genes. In the absence of the exosome, MYCN-directed elongation by RNA Polymerase II (RNAPII) is slow and non-productive on a large group of cell cycle-regulated genes. During the S phase of MYCN-driven tumor cells, the exosome is required to prevent the accumulation of stalled replication forks and of double-strand breaks close to the transcription start sites. Upon depletion of the exosome, activation of ATM causes recruitment of BRCA1, which stabilizes nuclear mRNA decapping complexes, leading to MYCN-dependent transcription termination. Disruption of mRNA decapping in turn activates ATR, indicating transcription-replication conflicts. We propose that exosome recruitment by MYCN maintains productive transcription elongation during S-phase and prevents transcription-replication conflicts to maintain the rapid proliferation of neuroendocrine tumor cells.
DOI: 10.17632/tj9hgksyvw
title: Data for: Contribution of externally bonded FRP shear reinforcements to the shear strength of a strengthened RC beam

description: Shear strength contributions, Crack patterns and Strains in transverse reinforcements
DOI: 10.17632/v5gxmwyg79
title: Dataset Correlation Stock Price Towards Public Sentiment in Automotive Industry

description: The following data is the result of sentiment analysis and stock prices for car brands (Volkswagen, Chrysler, General Motors) from various social media and news platforms
DOI: 10.17632/v8688cvv9s
title: Data for: Autonomic dysfunction in childhood hypersomnia disorders

description: patients with hypersomnia may exhibit concurrent orthostatic intolerance that can contribute to daytime fatigue.
DOI: 10.3535/9r1-nw2-gq4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r4n-5jv-kjw
title: †Spiriferina d'Orbigny, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28395707.v3
title: <b>Species-level studies do not upscale to community-wide plant-soil feedbacks</b>

description: Plant-soil feedback (PSF) is an important driver of plant community dynamics. Our study revealed that when soil was conditioned by more than four species, community-level PSFs were dominated by specific species rather than being an aggregation of single-species PSFs.
DOI: 10.17632/264fhmxfdr
title: Dataset: Enhancing Sustainable Assessment of Electric Vehicles: A Comparative Study of the TOPSIS Technique with Interval Numbers for Uncertainty Management

description: Dataset from Enhancing Sustainable Assessment of Electric Vehicles: A Comparative Study of the TOPSIS Technique with Interval Numbers for Uncertainty Management
DOI: 10.17632/fxv6kcp6j3
title: Improvement of NGAL sensitivity and specificity predicting AKI after cardiac surgery

description: The NGAL assay performance could be improved by two consecutive plasma measurements, then with the combination of kidney biomarker with the functional marker serum creatinine at 10-18 h after surgery.
DOI: 10.3535/7ww-vxf-5tc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/spy-nr8-7w3
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17033417.v1
title: Gene gain facilitated endosymbiotic evolution of Chlamydiae

description: Additional data associated with the article "Gene gain facilitated endosymbiotic evolution of Chlamydiae".
DOI: 10.6084/m9.figshare.19993523.v1
title: Data for:Disentangling the role of environmental filtering and biotic resistance on alien invasions in a reservoir area

description: Data supporting the study 'Disentangling the role of environmental filtering and biotic resistance on alien invasions in a reservoir area' is uploaded. Two parts of data are included in this data file, one named "field dataset" has all the data collected from field survey and collection, the other named "meta data" is the metadata of field dataset. Contact the author if you have any question with this data file. We are willing to collaborate with anyone.
DOI: 10.6084/m9.figshare.5620417.v1
title: Entity mention in articles used for benchmark

description: List of protein, disease, and compartment mentions per article
DOI: 10.3535/5bk-v71-jsj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wlc-2nf-v77
title: Specklinia Lindl.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/npy-jb5-h7e
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sw9-vcc-749
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/apm-zr6-drk
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/blt-dd6-5cv
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24973392.v2
title: BSTS and GWLR Modelling Impacts of COVID-19 Lockdowns on theSpatio-temporal Patterns of London Crimes Datasets

description: Given the paramount impacts of COVID-19 on people’s lives in the capital of the UK, London, it was foreseeable that the city’s crime patterns would have undergone significant transformations, especially during lockdown periods. This study aims to testify the crime patterns’ changes in London, using data from March 2020 to March 2021 to explore the driving forces for such changes, and hence propose data-driven insights for policy makers and practitioners on London’s crime deduction and prevention potentiality in post-pandemic era. (1) Upon exploratory data analyses on the overall crime change patterns, an innovative BSTS model has been proposed by integrating restriction-level time series into the Bayesian structural time series (BSTS) model. This novel method allows the research to evaluate the varied effects of London’s three lockdown periods on local crimes among the regions of London. (2) Based on the predictive results from the BSTS modelling, three regression models were deployed to identify the driving forces for respective types of crime experiencing significant increases during lockdown periods. (3) The findings solidified research hypotheses on the distinct factors influencing London’s specific types of crime by period and by region. In light of the received evidence, insights on a modified policing allocation model and supporting the unemployed group was proposed in the aim of effectively mitigating the surges of crimes in London.
DOI: 10.17632/ms63nycr7d
title: Datasets_Association of Melanoma Tumor Mutational Burden with Indoor Tanning and other Clinical Characteristics

description: Demographic information (patient age at diagnosis, sex, self- identified race, and year of diagnosis), skin risk factors (UV exposure and dermatologic history, indoor tanning exposure [both yes/no and number of total lifetime exposures], fitzpatrick skin type, and history of non-melanoma skin cancer, atypical nevi, and blistering sunburns), and clinical tumor characteristics (AJCC 8 stage of diagnosis and TMB) of adult patients with cutaneous melanoma. Datasets for "Association of Melanoma Tumor Mutational Burden with Indoor Tanning and other Clinical Characteristics."
DOI: 10.17632/p4c823jzxz
title: A pan-variant mRNA-LNP T cell vaccine protects HLA transgenic mice from mortality after infection with SARS-CoV-2 Beta

description: This repository contains original data collected for the paper:

A pan-variant mRNA-LNP T cell vaccine protects HLA transgenic mice from mortality after infection with SARS-CoV-2 Beta
Brandon Carter, Pinghan Huang, Ge Liu, Yuejin Liang, Paulo J. C. Lin, Bi-Hung Peng, Lindsay G. A. McKay, Alexander Dimitrakakis, Jason Hsu, Vivian Tat, Panatda Saenkham-Huntsinger, Jinjin Chen, Clarety Kaseke, Gaurav D. Gaiha, Qiaobing Xu, Anthony Griffiths, Ying K. Tam, Chien-Te K. Tseng, David K. Gifford
Frontiers in Immunology, 2023
https://doi.org/10.3389/fimmu.2023.1135815

Additional source code is available at: https://github.com/gifford-lab/MIT-T-COVID-vaccine

Please cite the paper if you use these data.
DOI: 10.3535/n7p-hrm-q7e
title: Chondrites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vgb-k8h-r1p
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28691747.v1
title: The data of PDN and TN

description: The data of PDN and TN
DOI: 10.17632/vm6pykn8b6
title: Data for: Stakeholder Perspectives on the Cost Requirements of Small Modular Reactors

description: Data has been edited to remove key details about participants, organisations involved in the study and commercially sensitive information. For further details and clarification please contact the lead author.
DOI: 10.17632/vnzbpxx7c2
title: Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment

description: New medications for Rheumatoid Arthritis (RA) have emerged in the last decades, including Disease Modifying Antirheumatic Drugs (DMARDs) and biologics. However, there is no known cure, since a significant proportion of patients remain or become non-responders to current therapies. The development of new mode-of-action treatment schemes involving combination therapies could prove successful for the treatment of a greater number of RA patients. In this work we investigated the effect of the Tyrosine Kinase inhibitors (TKIs) dasatinib and bosutinib, on the human TNF-dependent Tg197 arthritis mouse model. The inhibitors were administered either as a monotherapy or in combination with a subtherapeutic dose of anti-hTNF biologics and their therapeutic effect was assessed clinically, histopathologically as well as via gene expression analysis and was compared to that of an efficient TNF monotherapy. We found that dasatinib and, to a lesser extent, bosutinib inhibited the production of TNF and proinflammatory chemokines from arthritogenic synovial fibroblasts. Dasatinib, but not bosutinib, also ameliorated significantly and in a dose-depended manner both the clinical and histopathological signs of Tg197 arthritis. Combination of dasatinib with a subtherapeutic dose of anti-hTNF biologic agents, resulted in a synergistic inhibitory effect abolishing all arthritis symptoms. Gene expression analysis of whole joint tissue of Tg197 mice revealed that the combination of dasatinib with a low subtherapeutic dose of Infliximab most efficiently restores the pathogenic gene expression profile to that of the healthy state compared to either treatment administered as a monotherapy. Our findings show that dasatinib exhibits a therapeutic effect in TNF-driven arthritis and can act in synergy with a subtherapeutic anti-hTNF dose to effectively treat the clinical and histopathological signs of the pathology. The combination of dasatinib and anti-hTNF exhibits a distinct mode of action in restoring the arthritogenic gene signature to that of a healthy profile. Potential clinical applications of combination therapies with kinase inhibitors and anti-TNF agents, may provide an interesting alternative to high-dose anti-hTNF monotherapy and increase the number of patients responding to treatment. Files in the this dataset contain the total normalized expression values for all replicates of both untreated (wild-type and diseased) and treated (infliximab, dasatinib and dasatinib+infliximab) animal samples.
DOI: 10.3535/gqt-ats-hhr
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ttv-elw-fdc
title: Calcite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r8g-kcx-8jz
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wa4-pl0-6d9
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6mmd96j5bg
title: CLASS_CHANDRAYAAN2

description: Lunar X-ray spectral data from Chandrayaan-2 Large Area Soft x-ray Spectrometer for (1) 18 November 2019 (2) 29 May 2020 is uploaded for the purpose of access to reviewers
DOI: 10.3535/6nz-5tk-wl0
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rqr-0hp-9wc
title: Paleofavosites schmidti

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13291868.v1
title: raw sequencing data.zip

description: raw sequencing data for transient ischemic attack and ischemic stroke.
DOI: 10.6084/m9.figshare.18275966.v2
title: Research on well group classification of polymer flooding based on reservoir data mining and parameter inversion technology.zip

description: Because of the diverse depositional environment, development and oil genesis status of the targeted reservoir in polymer oil displacement, the physical parameters in polymer oil displacement block are remarkably diverse, so the enhanced oil recovery range between diverse well groups of polymer oil displacement is quite different, and it's hard to realize the tracking of the development, adjust and evaluate the later phase of polymer oil displacement.In order to establish the stage adjustment standard of polymer oil displacement, it's imperative to establish stage recovery normal curves for diverse kinds of polymer oil displacement wellgroups.Herein, the sensitivity of factors affecting well group classification was determined by analyzing static and kinetic data of polymer oil displacement block, and the method of well group categorization was realized via gray relation approach and statistics.On this basis, EnKF approach was utilized to realize the inversion of polymer flooding property parameters and phase permeation curves of diverse wellgroups. By combining EnKF approach with polymer oil displacement modeling technique, the development effects of diverse kinds of polymer oil displacement wellgroups were predicted, and the development effect criteria of diverse kinds of polymer oil displacement wellgroups were obtained.<br>
DOI: 10.6084/m9.figshare.19609608.v1
title: Nc_GeneModels.gff3

description: Genome annotation of <em>Nibea coibor</em> provided an important basis for the subsequent research of genetic breeding and genome evolution of <em>Nibea coibor</em>.
DOI: 10.3535/2qg-7kf-86f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fgb-bg2-fxn
title: Tabulata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20159807.v3
title: Submarine groundwater discharge in the northern Bohai Sea, China: implications for coastal carbon budgets and buffering capacity

description: <strong>Supporting Information</strong> Table S1 and Table S2 for submarine groundwater discharge in the northern Bohai Sea, China: implications for coastal carbon budgets and buffering capacity. <br> <strong>Table S1:</strong> the statistic summaries of environmental parameters including radium activities and carbon concentrations in all water samples in Liaodong Bay. <strong>Table S2:</strong> groundwater carbon data along the Chinese coastlines
DOI: 10.6084/m9.figshare.21716789.v1
title: Contrasting effects of frugivore assemblages and phylogeny on global variation in fruit length and width

description: Nowadays, the evolution of fruit size is still poorly understood though theories of coevolution between fleshy fruits and frugivores have long pointed out the effects of different-sized frugivores and phylogeny. We compile a global-scale dataset on fruit traits of 312 fleshy-fruited plants and frugivore body size from over 300 interaction networks exposed to very different suites of frugivores, and reveal a global positive relationship between frugivore body size and fruit size, i.e., length and width. Using partial R2s model that accounts for species’ shared evolutionary histories, we first show that global variation in fruit width is explained by frugivorous assemblages rather than phylogeny and leaf area. Despite significant evolutionary correlation between fruit length and width, fruit length appears to be more phylogenetically constrained and less sensitive to frugivore-driven selection than width. Our large-scale study provides first evidence of strong phylogenetic constraints of fruit length and frugivore-driven selection on fruit width, providing a novel mechanistic explanation for better understanding the evolution of fruit size across fleshy-fruited plant species.