DOI: 10.5281/zenodo.3402751
title: Anatomical wood traits of tree species in old-growth and selectively logged forest

description: <b>Description: </b>Traits matrix of wood anatomical characteristics for tree species in selectively logged forest at SAFE and in old-growth forest in Danum Valley and Maliau Basin. Sampled during the BALI project traits campaign<b>Project: </b>This dataset was collected as part of the following SAFE research project: <b>Biodiversity and land-use impacts on tropical ecosystem function (BALI): Quantifying functional trait distributions across the disturbance gradient</b><b>Funding: </b>These data were collected as part of research funded by: NERC (Standard grant, NE/K016253/1)This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs.<b>Permits: </b>These data were collected under permit from the following authorities:Sabah Biodiversity Centre (Research licence JKM/MBS.1000-2.2(385))<b>XML metadata: </b>GEMINI compliant metadata for this dataset is available here<b>Files: </b>This consists of 1 file: Both_wood_anatomical_traits_complete_dataset.xlsx<b>Both_wood_anatomical_traits_complete_dataset.xlsx</b>This file contains dataset metadata and 1 data tables:<b>Wood_anatomical_traits</b> (described in worksheet Wood_anatomical_traits)Description: Traits matrix of wood anatomical characteristics for tree species in selectively logged forest at SAFE and in old-growth forest in Danum Valley and Maliau Basin. Sampled during the BALI project traits campaignNumber of fields: 18Number of data rows: 596Fields: <b>location</b>: Location (Field type: location)<b>forest_type</b>: Forest type: OG: old-growth plots, Maliau and Danum; SL: selectively logged plots at SAFE (Field type: categorical)<b>forestplots_name</b>: Plot name coherent with forestplots database (Field type: id)<b>plot_name_trait_campaign</b>: Plot name used during the BALI trait campaign (Field type: id)<b>sample_code</b>: Sample code referencing: plot-'T'(ree) ID-branch type (Field type: id)<b>branch_type</b>: Binary classification of branch sampled depending on their position in the tree crown. BS: sun branch; BSH: shade branch (Field type: id)<b>sampling_date</b>: Date of sampling (Field type: date)<b>tree_id</b>: Reference for tree tag label (Field type: id)<b>species</b>: Tree species (Field type: taxa)<b>Wedge.area.micron2</b>: Area of wedge from microtome slice used for analysis. (Field type: numeric trait)<b>No.vessel.wedge</b>: Count of vessels in the respective wedge area. (Field type: numeric trait)<b>Vessel.diameter.micron</b>: Mean vessel diameter. Vessel diameter is determined as the mean of the maximum and minimum (lumen) diameters. (Field type: numeric trait)<b>Median.vessel.diameter.micron</b>: The middle value of the vessel diameter data set. (Field type: numeric trait)<b>Hydraulically.weighted.diameter.micron</b>: Hydraulically weighted mean diameter. Calculated as (∑ diameter^5) / (∑ diameter^4). (Field type: numeric trait)<b>Vessel.area.micron2</b>: Mean vessel area. Vessel area is determined by the average cross-sectional area of all vessel lumens (excluding vessel walls) in the wedge-shaped transect of the branch wood cross-section. (Field type: numeric trait)<b>Median.vessel.area.micron2</b>: The middle value of the vessel area data set. (Field type: numeric trait)<b>Vessel.lumen.tot.area</b>: Total area of the vessel lumens in the wedge-shaped transect of the branch wood cross-section. (Field type: numeric trait)<b>vessel.lumen.f.wedge</b>: Vessel lumen fraction. From the vessel areas and transect areas, vessel lumen fraction is calculated as the fraction of transect area filled by vessel lumens. (Field type: numeric trait)<b>Date range: </b>2014-05-01 to 2018-09-01<b>Latitudinal extent: </b>4.5000 to 5.0700<b>Longitudinal extent: </b>116.7500 to 117.8200<b>Taxonomic coverage: </b><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. - Plantae <br> - - Tracheophyta <br> - - - Magnoliopsida <br> - - - - Malpighiales <br> - - - - - Chrysobalanaceae <br> - - - - - - <i>Licania</i> <br> - - - - - - - <i>Licania splendens</i> <br> - - - - - Hypericaceae <br> - - - - - - <i>Cratoxylum</i> <br> - - - - - Irvingiaceae <br> - - - - - - <i>Irvingia</i> <br> - - - - - - - <i>Irvingia malayana</i> <br> - - - - - Centroplacaceae <br> - - - - - - <i>Bhesa</i> <br> - - - - - - - <i>Bhesa indica</i> (as synonym: <i>Bhesa paniculata</i>)<br> - - - - - Clusiaceae <br> - - - - - - <i>Garcinia</i> <br> - - - - - - - <i>Garcinia benthamiana</i> <br> - - - - - - - <i>Garcinia forbesii</i> <br> - - - - - - - <i>Garcinia parvifolia</i> <br> - - - - - Salicaceae <br> - - - - - - <i>Homalium</i> <br> - - - - - - - <i>Homalium foetidum</i> <br> - - - - - Putranjivaceae <br> - - - - - - <i>Drypetes</i> <br> - - - - - - - <i>Drypetes longifolia</i> <br> - - - - - Achariaceae <br> - - - - - - <i>Hydnocarpus</i> <br> - - - - - - <i>Ryparosa</i> <br> - - - - - - - <i>Ryparosa acuminata</i> <br> - - - - - Euphorbiaceae <br> - - - - - - <i>Spathiostemon</i> <br> - - - - - - <i>Hancea</i> <br> - - - - - - - <i>Hancea penangensis</i> (as synonym: <i>Mallotus penangensis</i>)<br> - - - - - - <i>Neoscortechinia</i> <br> - - - - - - - <i>Neoscortechinia kingii</i> <br> - - - - - - - <i>Neoscortechinia philippinensis</i> <br> - - - - - - <i>Mallotus</i> <br> - - - - - - - <i>Mallotus leucodermis</i> <br> - - - - - - - <i>Mallotus miquelianus</i> <br> - - - - - - - <i>Mallotus mollissimus</i> <br> - - - - - - - <i>Mallotus wrayi</i> <br> - - - - - - <i>Ptychopyxis</i> <br> - - - - - - - <i>Ptychopyxis arborea</i> <br> - - - - - - <i>Macaranga</i> <br> - - - - - - - <i>Macaranga conifera</i> <br> - - - - - - - <i>Macaranga gigantea</i> <br> - - - - - - - <i>Macaranga hypoleuca</i> <br> - - - - - - - <i>Macaranga pearsonii</i> <br> - - - - - - - <i>Macaranga winkleri</i> <br> - - - - - - <i>Blumeodendron</i> <br> - - - - - - - <i>Blumeodendron kurzii</i> <br> - - - - - - - <i>Blumeodendron tokbrai</i> <br> - - - - - Phyllanthaceae <br> - - - - - - <i>Aporosa</i> (as synonym: <i>Aporusa</i>)<br> - - - - - - <i>Cleistanthus</i> <br> - - - - - - - <i>Cleistanthus hirsutulus</i> <br> - - - - - - - <i>Cleistanthus hylandii</i> <br> - - - - - - - <i>Cleistanthus oblongifolius</i> (as synonym: <i>Cleistanthus myrianthus</i>)<br> - - - - - - <i>Glochidion</i> <br> - - - - - - <i>Phyllanthus</i> <br> - - - - - - - <i>Phyllanthus lutescens</i> (as synonym: <i>Glochidion lutescens</i>)<br> - - - - - - - <i>Phyllanthus ruber</i> (as synonym: <i>Glochidion rubrum</i>)<br> - - - - - - <i>Baccaurea</i> <br> - - - - - - - <i>Baccaurea lanceolata</i> <br> - - - - - - - <i>Baccaurea macrocarpa</i> <br> - - - - - - - <i>Baccaurea tetrandra</i> <br> - - - - - Calophyllaceae <br> - - - - - - <i>Mesua</i> <br> - - - - - - - <i>Mesua oblongifolia</i> (as synonym: <i>Kayea oblongifolia</i>)<br> - - - - - - - <i>Mesua macrantha</i> <br> - - - - - - <i>Calophyllum</i> <br> - - - - - - - <i>Calophyllum soulattri</i> <br> - - - - Malvales <br> - - - - - Malvaceae <br> - - - - - - <i>Heritiera</i> <br> - - - - - - - <i>Heritiera elata</i> <br> - - - - - - <i>Pterygota</i> <br> - - - - - - - <i>Pterygota alata</i> <br> - - - - - - <i>Pentace</i> <br> - - - - - - - <i>Pentace borneensis</i> (as synonym: <i>Pentace laxiflora</i>)<br> - - - - - - <i>Sterculia</i> <br> - - - - - - - <i>Sterculia stipulata</i> <br> - - - - - - <i>Microcos</i> <br> - - - - - - - <i>Microcos crassifolia</i> <br> - - - - - - <i>Scaphium</i> <br> - - - - - - - <i>Scaphium macropodum</i> <br> - - - - - - <i>Boschia</i> <br> - - - - - - - <i>Boschia grandiflora</i> (as synonym: <i>Durio grandiflorus</i>)<br> - - - - - - <i>Durio</i> <br> - - - - - - - <i>Durio graveolens</i> <br> - - - - - Dipterocarpaceae <br> - - - - - - <i>Shorea</i> <br> - - - - - - - <i>Shorea almon</i> <br> - - - - - - - <i>Shorea angustifolia</i> <br> - - - - - - - <i>Shorea argentifolia</i> <br> - - - - - - - <i>Shorea beccariana</i> <br> - - - - - - - <i>Shorea faguetiana</i> <br> - - - - - - - <i>Shorea falciferoides</i> <br> - - - - - - - <i>Shorea fallax</i> <br> - - - - - - - <i>Shorea gibbosa</i> <br> - - - - - - - <i>Shorea guiso</i> <br> - - - - - - - <i>Shorea johorensis</i> <br> - - - - - - - <i>Shorea leprosula</i> <br> - - - - - - - <i>Shorea leptoderma</i> <br> - - - - - - - <i>Shorea macrophylla</i> <br> - - - - - - - <i>Shorea macroptera</i> <br> - - - - - - - <i>Shorea ovalis</i> <br> - - - - - - - <i>Shorea ovata</i> <br> - - - - - - - <i>Shorea parviflora</i> <br> - - - - - - - <i>Shorea parvifolia</i> <br> - - - - - - - <i>Shorea parvistipulata</i> <br> - - - - - - - <i>Shorea pauciflora</i> <br> - - - - - - - <i>Shorea pinanga</i> <br> - - - - - - - <i>Shorea superba</i> <br> - - - - - - - <i>Shorea symingtonii</i> <br> - - - - - - - <i>Shorea xanthophylla</i> <br> - - - - - - <i>Shorea</i> <br> - - - - - - - <i>Shorea almon</i> <br> - - - - - - - <i>Shorea angustifolia</i> <br> - - - - - - - <i>Shorea argentifolia</i> <br> - - - - - - - <i>Shorea beccariana</i> <br> - - - - - - - <i>Shorea faguetiana</i> <br> - - - - - - - <i>Shorea falciferoides</i> <br> - - - - - - - <i>Shorea fallax</i> <br> - - - - - - - <i>Shorea gibbosa</i> <br> - - - - - - - <i>Shorea guiso</i> <br> - - - - - - - <i>Shorea johorensis</i> <br> - - - - - - - <i>Shorea leprosula</i> <br> - - - - - - - <i>Shorea leptoderma</i> <br> - - - - - - - <i>Shorea macrophylla</i> <br> - - - - - - - <i>Shorea macroptera</i> <br> - - - - - - - <i>Shorea ovalis</i> <br> - - - - - - - <i>Shorea ovata</i> <br> - - - - - - - <i>Shorea parviflora</i> <br> - - - &e