cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pklufu
title: Occurrence Download

description: A dataset containing 1868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Month is greater than or equal to January",
 "Country is New Zealand",
 "TaxonKey is Falconiformes"
 ]
}

 The dataset includes 1868 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011329-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwsx65
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium obtextiforme Dahlst. ex Notø"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025677-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ski9i3
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diphylla ecaudata Spix, 1823",
 "Country is Brazil"
 ]
}

 The dataset includes 74 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011329-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzg7kz
title: Occurrence Download

description: A dataset containing 6271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calliergon giganteum (Schimp.) Kindb.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 6271 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011321-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agk6fr
title: Occurrence Download

description: A dataset containing 34508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nicandra physalodes (L.) Gaertn.",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34508 records from 409 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025678-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkdtf6
title: Occurrence Download

description: A dataset containing 22615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calla palustris L.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 22615 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011316-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6798kt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Malayotyphlops andyi Wynn, Diesmos & Brown, 2016"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003491-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dh6pwt
title: Occurrence Download

description: A dataset containing 11668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passer domesticus (Linnaeus, 1758)",
 {
 "or" : [
 "Country is Bhutan",
 "Country is Belgium",
 "Country is Bulgaria",
 "Country is Bahrain",
 "Country is Belarus",
 "Country is Bosnia and Herzegovina"
 ]
 }
 ]
}

 The dataset includes 11668 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011329-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evf2xv
title: Occurrence Download

description: A dataset containing 5731 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Carollia brevicaudum (Schinz, 1821))"
 ]
}

 The dataset includes 5731 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021506-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m93y6s
title: Occurrence Download

description: A dataset containing 3010 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Spatula cyanoptera cyanoptera"
 ]
}

 The dataset includes 3010 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003494-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00001917.0
title: Data Package for study.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.2xda9k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haplochromis xenognathus Greenwood, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((10.1382 20.0599,1.1382 20.0599,1.1382 11.0599,10.1382 11.0599,10.1382 20.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059582-250525065834625/datasets/export for details.
DOI: 10.34810/data483
title: EmoTwi50 [research data]

description: -
description: The dataset is a TSV (tab-separated) with five columns: the first two columns represent the codes of the pair of emojis evaluated, the third column their gold standard similarity, the fourth column their gold standard relatedness and the fifth column the average of the previous two values. Each row of the file represents the gold standard evaluation results of a pair of emojis. Remember that in order to retrieve the vectorial embedding corresponding to an emoji in our models, you need to add the token "eoji" before the emoji code.
DOI: 10.15468/dl.dq766y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haematococcus J.von Flotow, 1844",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059583-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snqfrg
title: Occurrence Download

description: A dataset containing 1345 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ummidia Thorell, 1875"
 ]
}

 The dataset includes 1345 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059584-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15704070
title: Dataset for Systematic Review: Computational Strategies for Depression Detection and Treatment
DOI: 10.48579/pro/ds5gjp
title: Ecosystem functions in oilseed rape

description: Ecosystem functions measured in 94 oilseed rape fields between 2016 and 2022: - pollination - natural pest control - soil organic matter decomposition Landscape variables, i.e. the amount of organic farming, meadow, hedgerows, forest and oilseed rape around the fields, are also provided.
DOI: 10.15468/dl.ajq79q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haplochromis xenognathus Greenwood, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((10.1382 29.0599,1.1382 29.0599,1.1382 20.0599,10.1382 20.0599,10.1382 29.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059585-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.10990379
title: Plastic additive content in earthworms

description: The dataset is related to the plastic additive content of earthworms. The results are described in an under review manunscript  "Effects of conventional and biodegradable microplastics on earthworm Eisenia andrei in two generations".
DOI: 10.5281/zenodo.10990380
title: Plastic additive content in earthworms

description: The dataset is related to the plastic additive content of earthworms. The results are described in an under review manunscript  "Effects of conventional and biodegradable microplastics on earthworm Eisenia andrei in two generations".
DOI: 10.25934/pr00001919.0
title: Data Package for study.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.y24dhw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haematococcus J.von Flotow, 1844",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059586-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ru3dsd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haplochromis xenognathus Greenwood, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((5.9985 -1.8197,6.1596 -1.4443,5.9957 -1.0552,5.6304 -0.9035,5.2841 -1.0308,5.1008 -1.4539,5.2222 -1.7725,5.639 -1.9676,5.9985 -1.8197))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059587-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15704102
title: Analysis of LiP-MS data - S. cerevisiae data

description: Exported S. cerevisiae data (Spectronaut output and sample annotation files) inlcuded in 'Analysis of Limited Proteolysis-Coupled Mass Spectrometry Data' (DOI: 10.1016/j.mcpro.2025.100934).

Code for paper analysis is provided on GitHub: https://github.com/beyergroup/Analysis-of-LiP-MS-data/blob/main/Analysis_Scerevisiae.R

Th LiPAnalyzeR pacakge is provided here: https://github.com/beyergroup/LiPAnalyzeR

 

Limited proteolysis combined with mass spectrometry (LiP-MS) facilitates probing structural changes on a proteome-wide scale. This method leverages differences in the proteinase K accessibility of native protein structures to concurrently assess structural alterations for thousands of proteins in situ. Distinguishing different contributions to the LiP-MS signal, such as changes in protein abundance or chemical modifications, from structural protein alterations remains challenging. Here, we present the first comprehensive computational pipeline to infer structural alterations for LiP-MS data using a two-step approach. 1) We remove unwanted variations from the LiP signal that are not caused by protein structural effects and 2) infer the effects of variables of interest on the remaining signal. Using LiP-MS data from three species, we demonstrate that this approach outperforms previously employed approaches. Our framework provides a uniquely powerful approach for deconvolving LiP-MS signals and separating protein structural changes from changes in protein abundance, posttranslational modifications, and alternative splicing. Our approach may also be applied to analyze other types of peptide-centric structural proteomics data, such as FPOP or molecular painting data.
DOI: 10.5281/zenodo.15704101
title: Analysis of LiP-MS data - S. cerevisiae data

description: Exported S. cerevisiae data (Spectronaut output and sample annotation files) inlcuded in 'Analysis of Limited Proteolysis-Coupled Mass Spectrometry Data' (DOI: 10.1016/j.mcpro.2025.100934).

Code for paper analysis is provided on GitHub: https://github.com/beyergroup/Analysis-of-LiP-MS-data/blob/main/Analysis_Scerevisiae.R

Th LiPAnalyzeR pacakge is provided here: https://github.com/beyergroup/LiPAnalyzeR

 

Limited proteolysis combined with mass spectrometry (LiP-MS) facilitates probing structural changes on a proteome-wide scale. This method leverages differences in the proteinase K accessibility of native protein structures to concurrently assess structural alterations for thousands of proteins in situ. Distinguishing different contributions to the LiP-MS signal, such as changes in protein abundance or chemical modifications, from structural protein alterations remains challenging. Here, we present the first comprehensive computational pipeline to infer structural alterations for LiP-MS data using a two-step approach. 1) We remove unwanted variations from the LiP signal that are not caused by protein structural effects and 2) infer the effects of variables of interest on the remaining signal. Using LiP-MS data from three species, we demonstrate that this approach outperforms previously employed approaches. Our framework provides a uniquely powerful approach for deconvolving LiP-MS signals and separating protein structural changes from changes in protein abundance, posttranslational modifications, and alternative splicing. Our approach may also be applied to analyze other types of peptide-centric structural proteomics data, such as FPOP or molecular painting data.
DOI: 10.5281/zenodo.15704234
title: ISO15693 RFID Antenna Smart Tray HF – Datasheet DA38

description: This document provides the full specifications for our ISO15693 RFID antenna. Ideal for enhancing checkout efficiency in quick-service restaurant applications, the antenna delivers reliable HF RFID tag reading, housed within a durable, waterproof Smart Tray design.More info at https://rfidtag.com/product/smart-tray-hf-rfid-antenna-iso-15693/
DOI: 10.5281/zenodo.15704235
title: ISO15693 RFID Antenna Smart Tray HF – Datasheet DA38

description: This document provides the full specifications for our ISO15693 RFID antenna. Ideal for enhancing checkout efficiency in quick-service restaurant applications, the antenna delivers reliable HF RFID tag reading, housed within a durable, waterproof Smart Tray design.More info at https://rfidtag.com/product/smart-tray-hf-rfid-antenna-iso-15693/
DOI: 10.15468/dl.5xb8tm
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cantharellus cibarius Fr."
 ]
}

 The dataset includes 63 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059588-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.na2qhk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haematococcus J.von Flotow, 1844",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059589-250525065834625/datasets/export for details.
DOI: 10.25934/pr00001918.0
title: Data Package for study.

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.15468/dl.tkje7g
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cantharellus tubaeformis Fr."
 ]
}

 The dataset includes 43 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059590-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2djxw
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Boletus edulis Bull."
 ]
}

 The dataset includes 67 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059591-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2h837g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Haplochromis xenognathus Greenwood, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((6.524 -0.514,7.0065 -0.2456,7.2624 0.2943,7.123 0.7051,6.6607 0.9135,6.1391 0.6726,5.9617 0.2289,6.1206 -0.3209,6.524 -0.514))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059592-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15697399
title: Benchmarking Knowledge Editing using Logical Rules

description: This DOI contains 3 zip folders detailed as follows:



Original datasets: are the datasets used to construct the knowledge graph

QA_pairs: are the generated test cases questions answering using rules for each dataset

Rules: are rules generated using AMIE3 based on  the knowledge graph
DOI: 10.5281/zenodo.15697400
title: Benchmarking Knowledge Editing using Logical Rules

description: This DOI contains 3 zip folders detailed as follows:



Original datasets: are the datasets used to construct the knowledge graph

QA_pairs: are the generated test cases questions answering using rules for each dataset

Rules: are rules generated using AMIE3 based on  the knowledge graph
DOI: 10.15468/dl.zzdswd
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gypsophila vaccaria (L.) Sm."
 ]
}

 The dataset includes 479 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059593-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data484
title: PunkProse [software]

description: Punctuation marks support understandability and readability in written language. In spoken language, punctuation of the transcribed speech is influenced by two phenomena: (1) syntax and (2) prosody. We present a software architecture that makes it possible to train punctuation restoration models from any combination of lexical, morphosyntactic, prosodic and acoustic features. Architecture is language independent and feeds on word-segmented data. A dataset compiled from English TED talks is given in http://hdl.handle.net/10230/33981
description: This software is stored and maintained in the following github repository: https://github.com/alpoktem/punkProse
Instructions to use is explained there in detail.
DOI: 10.5281/zenodo.15698033
title: Data for: Valence and Non-Valence Photoactive Yellow Protein model Chromophore Spectroscopy
DOI: 10.5281/zenodo.15698034
title: Data for: Valence and Non-Valence Photoactive Yellow Protein model Chromophore Spectroscopy