cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f7q81b63
title: Northern Continental Divide Ecosystem grizzly bear (Ursus arctos) genetic profiles, 1998-2012

description: Two independent sampling methods were used to collect genetic samples from grizzly bears (Ursus arctos): (i) hair trapscorrals of barbed wire with lure in the center systematically distributed using an 8 x 8 km (1998, 2000) or 7 x 7 km (2004) grid and (ii) bear rubsnaturally occurring trees or other objects that bears rub on fitted with barbed wire (19982000, 2004, and 20092012). From 1998 to 2000, sampling occurred on 8000 km2 in the northern extent of the Northern Continental Divide Ecosystem (NCDE), whereas systematic and consistent, ecosystem-wide sampling occurred in 2004 and 20092012. In total, there were 6 160 confirmed grizzly bear detections, leading to the identification of 1 115 unique individual genotypes (520 male, 595 female).
DOI: 10.5066/f7sj1j25
title: Robert Fire Montana Tailed Frog Data 2001-2015

description: The data represent counts of Rocky Mountain Tailed Frog larvae from 8 streams in Glacier National Park, Montana. Each stream was surveyed during 5 different years. We originally sampled the eight streams during June 2001 to evaluate a time-constrained method for potential inclusion in a monitoring program. We sampled streams by turning rocks and disturbing the substrate in front of D-frame nets for 250 min, with surveyors moving progressing upstream. Surveyors focused on areas of optimal habitat (e.g., turbulent water, coarse substrates) to increase the likelihood of capturing larvae. Two surveyors sampled simultaneously for 5-min each (making one 10-min period) and called out captures to a data recorder. Surveyors alternated roles every five sampling periods. We excluded juveniles and adults from analyses because they use stream and forest habitats and are not sampled efficiently. After the 2003 fire burned four of the watersheds, we resurveyed the eight streams during 2004 and 2005 to evaluate the near-term effects of wildfire and again in 2014 and 2015 to evaluate population recovery. We used the same sampling methods and approximate starting point in each stream, each year. All surveys were conducted after the peak of runoff.
DOI: 10.5066/f7vx0fqg
title: Predicted carnivore conservation hotspots in Peninsular Malaysia

description: A raster surface identifying hotspots of conservation priority based on 375 location records (89 unique geographic locations) of 28 species of Carnivora in Peninsular Malaysia. Hotspot analysis was conducted by calculating the Getis-Ord Gi* (pronounced G-i-star) statistic, using IUCN Red List status rank for each species as a weighting variable. Raster cell values represent a kernel density of z-scores measuring the statistical significance of clustering or dispersion of species of conservation concern. Areas of high clustering (high z-scores) correspond to areas on Peninsular Malaysia where carnivore communities of conservation concern are more likely to persist, and delineate priority regions for carnivore conservation. Two identified carnivore hotspots are spatially concordant with two of the peninsulas largest and most contiguous forest complexes (Taman Negara National Park and Royal Belum State Park). A cold spot occurs in the southwestern region of the Peninsula.
DOI: 10.5066/p90f4g50
title: A comprehensive inventory of perennial snow and ice in Glacier National Park in 2005

description: These polygon features represent a comprehensive inventory of perennial snow and ice on the landscape in Glacier National Park (GNP) in 2005. The imagery used to delineate perennial snow and ice was taken late season, therefore, all snow and ice present on the landscape is assumed to be perennial. Whether each polygon is &quot;perennial snow and ice&quot; or &quot;active glacial ice&quot; is included. Active glacial ice is defined as perennial ice patches that exhibit characteristics such as bergschrunds and extensive crevassing. This release does not include the 2005 extent of the 37 named glaciers in GNP, which have been previously published. Polygons were digitized based on National Agricultural Imagery Program (NAIP) imagery acquired in 2005, imagery acquired by the National Park Service in 2004 to assess the extent of 2003 wildfires, and border Imagery from the Department of Homeland Security acquired in 2009. Digitization was completed by Adam Clark (USGS) and Kevin Jacks (USGS). Perennial snow and ice was digitized at 1:2000 scale.
DOI: 10.5066/p92bnvyi
title: Environmental DNA robotic and manual sampling data, Yellowstone and Snake Rivers, 2017-2019

description: Environmental DNA detection results from samples collected using autonomous water sampling robots and manual approaches. Samples were collected in the Upper Yellowstone River (Montana) and Upper Snake River (Idaho/Wyoming) in 2018 and 2019. Samples were tested for the DNA of the following species: the waterborne protozoa Naegleria spp., the fish pathogen Tetracapsuloides bryosalmonae, Scomber japonicas (mackerel fish), kokanee salmon (Oncorhynchus nerka) and dreissenid mussel (Dreissena spp.).
DOI: 10.17608/k6.auckland.13710868
title: rDNA copy number estimation using modal coverage pipeline for a 20-copy S. cerevisiae strain using different coverage levels and sliding window combinations

description: Assessing parameters for rDNA copy number estimation accuracy and precision
DOI: 10.17608/k6.auckland.13645913
title: rDNA copy number estimates for 1002 yeast genome data

description: rDNA copy numbers as estimated using modal coverage pipeline for the 788 isolates from the 1002 yeast genome project
DOI: 10.17608/k6.auckland.13645913.v1
title: rDNA copy number estimates for 1002 yeast genome data

description: rDNA copy numbers as estimated using modal coverage pipeline for the 788 isolates from the 1002 yeast genome project
DOI: 10.5066/p961tuqn
title: Individual specific hybridization data from the upper Snake River, Wyoming from 2014

description: Dataset includes individual-specific genetic data describing the extent of hybridization between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss) in Wyoming.
DOI: 10.17608/k6.auckland.13619117
title: S. cerevisiae 20-rDNA copy strain

description: S. cerevisiae 20-rDNA copy strain
DOI: 10.17608/k6.auckland.13619117.v1
title: S. cerevisiae 20-rDNA copy strain

description: S. cerevisiae 20-rDNA copy strain
DOI: 10.17608/k6.auckland.13619081
title: S. cerevisiae Wild type (150-rDNA copy) strain

description: S. cerevisiae 150- rDNA copy strain
DOI: 10.17608/k6.auckland.13619081.v1
title: S. cerevisiae Wild type (150-rDNA copy) strain

description: S. cerevisiae 150- rDNA copy strain
DOI: 10.17608/k6.auckland.13619042
title: S. cerevisiae 80-rDNA copy strain

description: S. cerevisiae strain with 80 rDNA copies
DOI: 10.17608/k6.auckland.13619042.v1
title: S. cerevisiae 80-rDNA copy strain

description: S. cerevisiae strain with 80 rDNA copies
DOI: 10.5066/p9cn4x34
title: Annual winter elk movements in the Greater Yellowstone Ecosystem 2001-2015

description: 521 unique elk with GPS collars were tracked using telemetry from 2001 to 2015 in the Greater Yellowstone Ecosystem to determine winter-to-winter annual dispersal distance of each individual. All elk were identified and located using telemetry during the months of January and February for two successive years. An individual elk was included at most three times in the data and each year was considered an independent sample of annual elk dispersal for a total of 704 annual elk movements. All elk were female, except one of the individuals in the dataset was a male. We included his movement in the analysis for completeness, but as there was only one male we chose not to directly model any differences in movement behavior between male and female elk.
DOI: 10.17608/k6.auckland.13830644.v1
title: set1- first 500 random draws for comparison with Suillus brevipes

description: random draws set 1- 500 files
DOI: 10.17608/k6.auckland.13830644
title: set1- first 500 random draws for comparison with Suillus brevipes

description: random draws set 1- 500 files
DOI: 10.5066/p9d9p9b4
title: Environmental DNA results for large and small volume water samples in mesocosm experiments at Creston Fish Hatchery and field surveys in the Flathead River Basin, MT in 2016

description: Quantitative PCR data from mesocosm experiments and field evaluations comparing coarse filter-large water volume environmental DNA samples vs. fine filter-small water volume environmental DNA samples for detection and quantification of rainbow trout (Oncorhynchus mykiss) and bull trout (Salvelinus confluentus) DNA. Mesocosm experiments took place at the US Fish & Wildlife Service's Creston Fish Hatchery in Montana, 2016. Field surveys took place in the Flathead River basin of Montana, 2016.
DOI: 10.17608/k6.auckland.13619018.v1
title: S. cerevisiae 40-rDNA copy strain

description: <i>S. cerevisiae </i>strain with 40 rDNA copies
DOI: 10.17608/k6.auckland.13619018
title: S. cerevisiae 40-rDNA copy strain

description: <i>S. cerevisiae </i>strain with 40 rDNA copies
DOI: 10.5066/p9iwsjux
title: Detection histories of grizzly bears in Grand Teton National Park, 2014-2015

description: This dataset contains detection histories of grizzly bears in areas of Grand Teton National Park that are open for elk harvest as part of the Elk Reduction Program. Sampling followed a robust design analysis with 6 primary sampling periods of 4 weekly secondary sampling periods each during 2014-2015. In both years, primary sampling periods were in July-August (no elk hunt), September-October (no elk hunt), and November-December (elk hunt). Detections were based on genetic sampling (hair samples from barbed-wire hair corrals, tree rubs or other structures, and elk carcasses). Detection histories were derived from a total of 274 grizzly bear hair samples of 31 individuals. Twenty-six unique individuals (4 F, 22 M) were retained for analysis.
DOI: 10.5066/p9lv1xcf
title: Pika presences in the western USA, 2012-2015

description: USGS researchers surveyed talus patches across the western USA, in conjunction with numerous partners during 2012-2015, inclusive. Data are locations at which American pikas were detected, via either vocalizations (C), fresh haypile (HP), or sighting (S).
DOI: 10.5066/p9nmzznp
title: PCR results from dreissenid mussel round robin assay analyses, 2018-2019

description: Real-time PCR results of a round robin evaluation of 5 assays that target dreissenid mussel DNA. Water samples collected from waters with and without dreissenid mussels were analyzed using these five assays in four USGS laboratories. Samples from waters without dreissenid mussels were spiked with known amounts of dreissend DNA.
DOI: 10.5066/p9onvsl5
title: Environmental DNA data, fish abundance data, and stream habitat data from northwest Montana and northeast Washington and southern British Columbia, Canada

description: Field estimates of the abundance of two trout species (bull trout and westslope cutthroat trout) in Montana and rainbow trout in Washington and British Columbia were collected in concert with environmental DNA samples (eDNA) to evaluate if eDNA copy numbers correlated with abundance of trout. In addition, stream habitat data including channel units (pools, riffles), substrate, large woody debris, among others, were collected at sites.
DOI: 10.5066/p9oyy6dn
title: Paleohydrologic reconstructions of water-year streamflow for 31 stream gaging sites in the Missouri River Basin with complete data for 1685 through 1977

description: Tree-ring reconstructions of water-year (Oct 1 through Sep 30th) flow for 31 gaging sites in Missouri River basin, with complete data for 1685 through 1977 (n = 293 water years). The complete 105 tree-ring reconstructions of streamflow used in the Nature Scientific Reports paper were obtained from various sources; 74 flow reconstructions were obtained from the web resource, TreeFlow (http://www.treeflow.info/), and an additional 31 flow reconstructions (provided here) for the Missouri River basin were obtained from the U.S. Geological Survey in Bozeman, Montana.
DOI: 10.5066/p9px9uvt
title: Alpine vegetation trends in Glacier National Park, Montana 2003-2018

description: This dataset is focused on alpine plant species presence/absence, species turnover, and trends in species abundance on four mountain summits in Glacier National Park, Montana, USA from 2003 through 2014. Two summit sites were established in 2003 on Dancing Lady and Bison Mountain, east of the continental divide. Two additional summit sites were established in 2004 on Pitamakin and Mt. Seward, also east of the continental divide. This multi-summit approach to monitoring alpine plant species follows the protocols of the Global Observation Research Initiative in Alpine Environments (GLORIA) that were initiated by the University of Vienna in 2000 and which have been refined and revised since then. GLORIA summit sites now exist throughout the world. Current protocols are available at: https://gloria.ac.at/downloads/manual. Plant surveys took place every five years during peak alpine plant growing season in late July and August on all aspects of the summits using a combination of area surveys and meter plots. Temperature loggers were buried 10 cm in the substrate on each summit aspect and the highest point of the summit area. The loggers recorded temperature at hourly intervals and were replaced every 3-5 years. Nearly continuous temperatures for some loggers were obtained from 2003 through 2018. To better track interannual variability, another band of plots was established below the summit plots in 2010 for Dancing Lady and 2011 for Pitamakin. These were surveyed every year until 2014. A total of 189 species were recorded for the four summit sites. Preliminary results indicated species turnover rates of 0-36% at the five year interval, and 6-55% at the ten year interval. Annual turnover rates for the lower bands on Dancing Lady and Pitamakin were 2-18%. The NE aspects were most species rich and S aspects had the greatest turnover rates. Little difference was evident as a function of elevation. Additional surveys are planned for the summer of 2019.
DOI: 10.5066/p9q8gclm
title: Environmental DNA surveillance data for USGS streamgage sampling in the Columbia River Basin, 2018

description: Environmental DNA quantitative PCR results for water samples collected in 2018 at USGS streamgages downstream of Columbia River Basin reservoirs that are considered to have moderate to high suitability for invasive dreissenid mussels. Water samples were tested for DNA of dreissenid mussels, kokanee salmon, and yellow perch. This is version 1.1 of this data release. The Kokanee_Perch_eDNA data and metadata files have been revised to correct for improper attribution of 16 samples. For access to previous versions, please contact the Point of Contact identified on this page. First Posted March 29, 2019 Revised July 19, 2019, ver 1.1
DOI: 10.5066/p9rbbskz
title: Bat occupancy model predictions for Montana from acoustic and mist net data 2008-2010

description: The spread of white-nose syndrome (WNS) across the eastern United States has raised conservation concerns and provided motivation for efforts to monitor the impacts of this disease. Currently, WNS has not yet been detected in Montana, or any other western state besides Washington, and it is unknown how severe it will impact species in this region once it arrives. Within an occupancy model framework, we analyzed mist netting and acoustic records for eight bat species in Montana to estimate baseline distributions across the state prior to the arrival of WNS. Heterogeneity in the probabilities of occupancy for each species was explained with covariates for forest cover (%), elevation, ruggedness, and average degree days. Our analysis provided no evidence of spatial correlation among occupancy probabilities within each species, but did suggest spatial correlation among detection probabilities likely related to timing of surveys. We incorporated spatially-correlated random effects in the model for detection probabilities to account for these patterns.
DOI: 10.5066/p9rcmmkl
title: Glacier National Park alpine aquatic invertebrates, 2011-2013

description: This data release incorporates high-resolution geospatial and biological data and accompanies a peer-reviewed manuscript &quot;Specialized meltwater biodiversity persists despite widespread deglaciation&quot;. In this study, we tested the prediction that glacier retreat reduces biodiversity in mountain ecosystems through the loss of uniquely adapted meltwater stream species in Glacier National Park, USA. This dataset, &quot;Glacier National Park alpine aquatic invertebrates, 2011-2013&quot;, includes location and landscape data, as well as quantitative aquatic macroinvertebrate community data for 129 collection sites within Glacier National Park. Additionally, this dataset includes watershed drainage area, area of ice and perennial snow cover for all sites, calculated using two geospatial datasets. The dataset &quot;Minimum snow and ice coverage for GNP, 2003-2015&quot; is a GIS shapefile of the minimum extent of glaciers and multi-year snow features digitized from satellite imagery. The dataset &quot;Glacier National Park alpine stream sampling watersheds, 2011-2013&quot; is a GIS shapefile of the drainage areas of each of the 129 alpine and glacial aquatic macroinvertebrate collection sites included in the analysis. The proportion of contemporary ice and snow coverage for each collecting site was calculated from the watershed drainage area, then compared to glacier coverage from the peak of the Little Ice Age (ca. 1850).
DOI: 10.5066/p9rlo04v
title: Environmental DNA results from dreissenid mussel early detection surveys in Montana, Minnesota, and Wisconsin 2017-2018

description: Positive and negative dreissenid mussel DNA quantitiative PCR results from environmental DNA water samples collected in Montana, Wisconsin and Minnesota to assess if environmental DNA can extend the seasonal window for dreissenid mussel early detection.
DOI: 10.5066/p9v36xg9
title: Soil sample locations for chronic wasting disease prion surveillance in Grand Teton National Park and National Elk Refuge 2019

description: A total of 200 soil samples were collected in the Greater Yellowstone Ecosystem in Grand Teton National Park and the National Elk Refuge in July 2019 for chronic wasting disease (CWD) monitoring purposes. To collect samples from locations where ungulates are most likely to be shedding or encountering CWD, we targeted elk collar data locations, known migration routes of mule deer and elk, and areas where yearly elk supplemental feeding generally occurs on the National Elk Refuge. We sampled 10 transects in Grand Teton National Park and 10 transects in the National Elk Refuge, each 1,000 meters in length. We collected soil samples every 100 meters along the transect for a total of 10 samples per transect. Terra Core Samplers were used to collect 10 grams of surface soil at each sample location. Here we provide the transect identifier, transect name, sample point name, GPS location where each soil sample was collected, and the date when each sample was collected. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
DOI: 10.5066/p9vmiflp
title: Bighorn sheep Ovine HD array genotypes from National Parks, 2004-2011

description: Between 2004 and 2011 bighorn sheep were darted in Glacier National Park and in Dinosaur National Monument. Blood was drawn. These are the genotypes resulting from an Ovine HD array from the bighorns. The first 3 columns refers to bighorn sheep identifiers: 'Herd_Unit', 'IndID', and 'AgencyID'. IndID is the identifier assigned at Montana State University. Subsequent columns each represent a locus, with the values in the locus representing the allele.
DOI: 10.25919/frk3-4m46
title: Parkes observations for project P1038 semester 2020OCTS_11

description: PSR~J1759-2402 is one of a small handful of pulsars which are in orbit about high mass stars. Its orbital period is 8.3 years and the orbit is highly eccentric with periastron expected in 2021 March. Although discovered at Parkes, the Lovell telescope has been monitoring the pulsar over many years. However, it’s restricted bandwidth, maintenance schedule and poorer polarization capability make it unsuitable to follow the pulsar as it enters and leaves the eclipse by the companion. In contrast, the UWL on Parkes with its wide- band and excellent polarization characteristics means that we can determine scattering, polarization, dispersion measure and rotation measure changes as the pulsar enters its companion wind. We request a continuation of our weekly observations of the pulsar to track its progress around the orbit.
DOI: 10.5281/zenodo.4533670
title: PhylEx: Accurate reconstruction of clonal structure via integrated analysis of bulk DNA-seq and single cell RNA-seq data

description: Data and results used in PhylEx. It includes the simulation data/results as well as ovarian cancer cell line and HER2+ breast cancer data. HER2+ data is anonymized.
DOI: 10.25919/n2v8-e946
title: Parkes observations for project P885 semester 2020OCTS_14

description: We propose to continue observing the magnetars 1E 1547.0?5408 and PSR J1622?4950 weekly, to track their rotation, flux density, and polarisation. The revolutionary UWL capabilities promise new opportunities to disentangle still mysterious radio emission mechanisms in magnetars. This promise is supported by the recent follow up of XTE J1810?197, again a radio magnetar after 10 years dormant, and of the hot-off-the-press magnetar Swift J1818.0?1607, for which our observations with the UWL receiver are providing unique and tantalizing measurements of radio spectrum and polarisation.
DOI: 10.6084/m9.figshare.13718065.v1
title: Earthquake event sequence age PDFs for lakes Kaniere, Mapourika, Paringa and Ellery

description: Earth event sequence age PDFs for lakes Kaniere, Mapourika, Paringa and Ellery.
DOI: 10.6084/m9.figshare.13718065
title: Earthquake event sequence age PDFs for lakes Kaniere, Mapourika, Paringa and Ellery

description: Earth event sequence age PDFs for lakes Kaniere, Mapourika, Paringa and Ellery.
DOI: 10.6084/m9.figshare.13718065.v2
title: Earthquake event sequence age PDFs for lakes Kaniere, Mapourika, Paringa and Ellery

description: Earth event sequence age PDFs for lakes Kaniere, Mapourika, Paringa and Ellery.
DOI: 10.6084/m9.figshare.13720501
title: 14C dates from lakes Kaniere, Mapourika and Paringa

description: Radiocarbon dates used to generate chronology for lakes Kainere, Mapourika and Paringa.
DOI: 10.13012/b2idb-5788371_v1
title: Census data for "Beyond denitrification: the role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions"

description: Data from census of peer-reviewed papers discussing nosZ and published from 2013 to 2019. These data were reported in the manuscript titled, "Beyond denitrification: the role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions" published in Global Change Biology as an Invited Report.
DOI: 10.6084/m9.figshare.12649805
title: FIXME - Intrinsic Quality Analysis of OpenStreetMap using Topic Models

description: Data sets used in the analysis of OpenStreetMap data quality issues, as indicated by OSM Contributors themselves, using the FIXME Feature Tag. Text Mining and Knowledge Exposition was done using Topic Models and Latent Labelled Dirichlet Allocation (L-LDA) algorithm. The data sets are taken from OSM North America and Australia and the text corpus processed in a format that is suitable to be used for L-LDA.