cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25504/fairsharing.3dm6gm
title: FAIRsharing record for: Edinburgh Human Developmental Anatomy
title: EHDA

description: This FAIRsharing record describes:  A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy (EMAP ontology) and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once. The EHDA; Hunter et al. 2003 is less complete than later versions: it comprises a set of ontologies, one for each Carnegie stage (CS) (1–20) that only includes basic part_of data. Its structure was derived from the original EMAP ontology, and its content was based partly on this and partly on a limited study of sectioned human material.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.d1zzym
title: FAIRsharing record for: Ethnicity Ontology
title: EO

description: This FAIRsharing record describes:  The Ethnicity Ontology (EO) has been developed by extending BFO to have a common reference for ethnicity concepts for semantic integration of datasets. It attempts to utilise iterated proxy markers for ethnicity such language spoken and interpreter requirements in order to support health care research studies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.77e3my
title: FAIRsharing record for: Molecular Interaction eXtensible Markup Language
title: PSI-MI XML

description: This FAIRsharing record describes:  The PSI-MI interchange format and accompanying controlled vocabularies was originally designed by a consortium of molecular interaction data providers from both academia and industry, including BIND, DIP, IntAct, MINT, MIPS, GlaxoSmithKline, CellZome, Hybrigenics, Universities of Bielefeld, Bordeaux, Cambridge, and others. It is maintained, and kept fit for purpose by the Molecular Interaction workgroup of the HUPO PSI. It can be used for storing any kind of molecular interaction data including complexes and binary interactions such as protein-protein interactions and nucleic acid interactions.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.g593w1
title: FAIRsharing record for: EDAM Bioimaging Ontology
title: EDAM-BIOIMAGING

description: This FAIRsharing record describes:  Bioimaging operations, data types, formats, identifiers and topics. EDAM-Bioimaging is an extension to the EDAM ontology (edamontology.org) for bioimaging, developed in collaboration with partners from NEUBIAS (neubias.org).
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.twp7vn
title: FAIRsharing record for: Bionutrition Ontology
title: BNO

description: This FAIRsharing record describes:  The Bionutrition Ontology relates concepts and terminologies used for human nutrition in a clinical and biomedical setting.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.1esk4f
title: FAIRsharing record for: Artificial Intelligence Rheumatology Consultant System Ontology
title: AI/RHEUM

description: This FAIRsharing record describes:  AI/RHEUM is used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.azqskx
title: FAIRsharing record for: Environment Ontology
title: ENVO

description: This FAIRsharing record describes:  The Environment Ontology (EnvO) provides a controlled, structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms ranging from astronomical objects, through planetary scale biomes, to nanomaterials. Further, these terms are interlinked with logical axioms describing their composition, colocalisation, and relationships to environmental and biological processes. Using ENVO terms for an environmental description allows a comprehensive description of environment that is key to machine-assisted integration, archiving and federated searching of environmental data.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.ehvpsh
title: FAIRsharing record for: Minimum information for publication of infrared-related data when microplastics are characterized
title: null

description: This FAIRsharing record describes:  Reporting guidelines specific to microplastic research parameters involved in infrared spectroscopy.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.kx2md1
title: FAIRsharing record for: Ontology of Immune Epitopes
title: ONTIE

description: This FAIRsharing record describes:  The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes. ONTIE has been developed as a subset of OBI (Ontology of Biomedical Investigations) and includes terms relating to experiments involving immune epitopes. This file contains the minimal amount of upper ontology terms and axioms from BFO (Basic Formal Ontology), IAO (Information Artifact Ontology) and OBI, in order to view and reason upon ONTIE. It is currently at version 0.1 beta. ONTIE covers terms regarding immune responses, adaptive immune receptors, immune epitope assays, MHC molecules, and infectious diseases. ONTIE is (at this development stage) a virtual ontology, drawing together terms from multiple reference ontologies. We are actively working on adding more terms to ONTIE either through term requests or through active contribution to external ontologies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.cq8tg2
title: FAIRsharing record for: Open Microscopy Environment - Tagged Image File Format
title: OME-TIFF

description: This FAIRsharing record describes:  OME-TIFF is a standardized file format for multidimensional image data. OME-TIFF was created to maximize the respective strengths of OME-XML and TIFF. It takes advantage of the metadata defined in OME-XML while retaining the pixels in multi-page TIFF format for compatibility with many more applications.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.w9jvbt
title: FAIRsharing record for: TErminology for the Description of DYnamics
title: TEDDY

description: This FAIRsharing record describes:  The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.0c89ff
title: FAIRsharing record for: Translation Memory eXchange
title: TMX

description: This FAIRsharing record describes:  Translation Memory eXchange (TMX) is an XML based standard which describes translation memory data that is being exchanged among tools and/or translation vendors, while introducing little or no loss of critical data during the process.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.595710
title: FAIRsharing record for: Agriculture and Forestry Ontology
title: AFO

description: This FAIRsharing record describes:  The Agriculture and Forestry Ontology (AFO), also known as the Agriforest Ontology, combines the concepts of the Agriforest Thesaurus with The Finnish General Upper Ontology (YSO). This combination of ontologies can be used for describing resources especially in domain of agriculture, forestry, veterinary medicine, food science, environmental science and biology.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.eeyne8
title: FAIRsharing record for: Maize Ontology
title: CO_322

description: This FAIRsharing record describes:  The Maize Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.jprvcd
title: FAIRsharing record for: Stroke Scale Ontology
title: nihss

description: This FAIRsharing record describes:  Domain ontology for describing the standardized neurological examination of stroke patients according to the National Institutes of Health Stroke Scale (NIHSS). The ontology is intended for describing the assessment of a patient after a stroke. A patient with more limitations is evaluated with more points (worse condition). An evaluation (score) with a value of 0 (zero) indicates a normal state.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.z656ab
title: FAIRsharing record for: Dictyostelium Anatomy Ontology
title: DDANAT

description: This FAIRsharing record describes:  The Dictyostelium Anatomy Ontology ontology describes the anatomy of the slime mold. It defines the structural makeup of Dictyostelium and its composing parts including the different cell types, throughout its life cycle. It has two main goals: (1) promote the consistent annotation of Dictyostelium-specific events, such as phenotypes and gene expression information; and (2) encourage researchers to use the same terms with the same intended meaning.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.23th83
title: FAIRsharing record for: GeoSpecies Ontology
title: GeoSpecies

description: This FAIRsharing record describes:  This ontology was designed to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.5g1fma
title: FAIRsharing record for: MIAPE: Mass Spectrometry
title: MIAPE-MS

description: This FAIRsharing record describes:  This module identifies the minimum information required to report the use of a mass spectrometer in a proteomics experiment, sufficient to support both the effective (re-)interpretation and (re-) assessment of the data and the potential reproduction of the work that generated it.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.gr06tm
title: FAIRsharing record for: CONSOlidated standards of Reporting Trials
title: CONSORT

description: This FAIRsharing record describes:  CONSORT encompasses various initiatives developed by the CONSORT Group to alleviate the problems arising from inadequate reporting of randomized controlled trials (RCTs). The 2010 guideline is intended to improve the reporting of parallel-group randomized controlled trial (RCT), enabling readers to understand a trial's design, conduct, analysis and interpretation, and to assess the validity of its results. This can only be achieved through complete adherence and transparency by authors. CONSORT 2010 was developed through collaboration and consensus between clinical trial methodologists, guideline developers, knowledge translation specialists, and journal editors (see CONSORT group ). CONSORT 2010 is the current version of the guideline and supersedes the 2001 and 1996 versions . It contains a 25-item checklist and flow diagram.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.fmz635
title: FAIRsharing record for: Gramene Taxonomy Ontology
title: GR-TAX

description: This FAIRsharing record describes:  Gramene Taxonomy Ontology (GR-TAX) is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily derived from NCBI Taxonomy, the revisions were made as and when/where required in the rankings. The rank of genome types was added by this project. This taxonomy ontology focuses on the Poaceae (Gramineae) family of plant taxonomy only.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.hgnk8v
title: FAIRsharing record for: Sample Tabular Format
title: SampleTab

description: This FAIRsharing record describes:  The BioSamples Database uses the SampleTab file format for submissions. This is a tab-delimited file that can be created in many spreadsheet editing software packages (e.g. Microsoft Excel). Although SampleTab files can have some advanced features, they can be written by users from a wide range of backgrounds using tools they are already familiar with. The SampleTab format has a number of advanced features for power users, such as ontology mappings, anonymous groups, and UTF-8 character encoding. Although this format is still accepted, the administrators of the BioSamples Database recommend that all submissions to BioSamples be made in JSON via our JSON API.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.wf28wm
title: FAIRsharing record for: UniProt Taxonomy
title: UP Taxonomy

description: This FAIRsharing record describes:  The taxonomy database that is maintained by the UniProt group is based on the NCBI taxonomy database, which is supplemented with data specific to the UniProt Knowledgebase (UniProtKB). While the NCBI taxonomy is updated daily to be in sync with GenBank/EMBL-Bank/DDBJ, the UniProt taxonomy is updated only at UniProt releases to be in sync with UniProtKB. It may therefore happen that for the time period of a UniProt release, you can find new taxa at the NCBI that are not yet in UniProt (and vice versa for deleted taxa). Species with manually annotated and reviewed protein sequences in the Swiss-Prot section of UniProtKB are named according to UniProt nomenclature. In particular, we have adopted a systematic convention for naming viral and bacterial strains and isolates.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.619eqr
title: FAIRsharing record for: Cerebrotendinous Xanthomatosis Ontology
title: CTX

description: This FAIRsharing record describes:  The ontology represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was build reusing the Human Phenotype Ontology (HPO) and the Snomed ct ontologies. A set of temporal clinical manifestations are semantically annotated with a domain phenotype ontology and registered with a time-stamped value.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.m21pn
title: FAIRsharing record for: STrengthening the REporting of Genetic Association Studies
title: STREGA

description: This FAIRsharing record describes:  The STrengthening the REporting of Genetic Association studies (STREGA) initiative builds on the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) Statement and provides additions to 12 of the 22 items on the STROBE checklist. The additions concern population stratification, genotyping errors, modelling haplotype variation, Hardy-Weinberg equilibrium, replication, selection of participants, rationale for choice of genes and variants, treatment effects in studying quantitative traits, statistical methods, relatedness, reporting of descriptive and outcome data, and the volume of data issues that are important to consider in genetic association studies.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.
DOI: 10.25504/fairsharing.wvdvwp
title: FAIRsharing record for: Electron Microscope Exchange Initiative
title: EMX

description: This FAIRsharing record describes:  The Electron Microscopy Exchange (EMX) format is a standard for metadata exchange in 3D electron microscopy.
description: The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies.