cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.rbnzs7hk7
title: Galaxias maculatus occurrence data in marine and freshwater environments in rivers of southern Chile

description: In the present study, we assessed ecological and historical factors
 (Gondwanan vicariance, marine dispersion) and potential dispersion
 (niche-tracking) that explain distribution of Galaxias maculatus in the
 Southern Hemisphere based on occurrences available in the Global
 Biodiversity Information Facility (GBIF; period 1980 to 2022) and
 ichthyological sampling in five river systems in southern Chile between
 March and November 2019. Ocurrence data extracted from GBIF are available
 at http://www.gbif.org and additional ichthyological sampling data that
 were used are provided here. Data provided here are based on sampling of
 Galaxias maculatus at 12 sites in five river systems in southern Chile
 during March, May, August, and November 2019. Sampling sites were selected
 to cover a continuous river gradient, including (whenever possible) the
 lower, middle, and upper sections of each river system. Fish were captured
 using beach seines (5 m long, 1.5 m high, and 10 mm stretched mesh) in
 shoreline habitats of each evaluated river system.
description: Occurrences of <em>Galaxias maculatus</em> obtained
 from ichthyological sampling in five river systems in southern Chile
 between March and November 2019 with corresponding geographic coordinates
 (decimal degrees WGS84).
description: # Galaxias maculatus occurrence data in marine and freshwater environments
 in rivers of southern Chile
 [https://doi.org/10.5061/dryad.rbnzs7hk7](https://doi.org/10.5061/dryad.rbnzs7hk7) Data provided are based on sampling of *Galaxias maculatus* at 12 sites in five river systems (Imperial River, Cruces River, Valdivia River, Bueno River, Maullín River) in southern Chile during March, May, August, and November 2019. Sampling sites were selected to cover a continuous river gradient, including (whenever possible) the lower, middle, and upper sections of each river system. Fish were captured using beach seines (5 m long, 1.5 m high, and 10 mm stretched mesh) in shoreline habitats of each evaluated river system. Collected fish were anesthetized, measured, weighed, and identified to the species level in situ. ## Description of the data and file structure Georeferenced (WGS84, decimal degrees) occurrences of *Galaxias maculatus* based on ichthyological sampling in five river systems in southern Chile between March and November 2019.
DOI: 10.5061/dryad.1g1jwsv46
title: Data from: Optimal sampling interval for characterisation of the circadian rhythm of body temperature in homeothermic animals using periodogram and cosinor analysis

description: Core body temperature (Tc) is a critical aspect of homeostasis in birds
 and mammals and is increasingly used as a biomarker of the fitness of an
 animal to its environment. Periodogram and cosinor analysis can be used to
 estimate the characteristics of the circadian rhythm of Tc from data
 obtained on loggers that have limited memory capacity and battery life.
 This data set contains five days of core body temperature, measured by
 loggers implanted into the abdominal cavity, in nine species of birds and
 mammals.
description: Raw data collected by temperature loggers implanted into the
 abdominal cavity of nine species of birds and mammals. All of the data
 were calibrated against a certified mercury in glass thermometer, or a
 certified platinum thermometer. All data are in degrees Celsius.
description: # Optimal sampling interval for characterisation of the circadian rhythm
 of body temperature in homeothermic animals using periodogram and cosinor
 analysis
 [https://doi.org/10.5061/dryad.1g1jwsv46](https://doi.org/10.5061/dryad.1g1jwsv46) Five days of core body temperature from nine species of bird and mammal. The number of individuals per species varies (alpaca n = 22, cheetah n = 5, mouse n = 6, barnacle goose n = 9, Pekin duck n = 19, rabbit n = 36, rat n = 6, sheep n = 12, blue wildebeest n = 6). ## Description of the data and file structure The date are provided as an excel file with one worksheet per species. Individual animals are in columns on each time. A time stamp is given in the first column of each worksheet. All of the data were calibrated against a certified mercury in glass thermometer before and after deployment. ## Sharing/Access information Five random days from each species were chosen for analysis. Total deployment in each species varied from weeks to months. Longer data sets, including the calibration data, are available from the authors. ## Code/Software Raw data provided. No post-processing has been done, apart from the application of calibration to each logger.
DOI: 10.13140/rg.2.2.12009.35682
title: 'Significance' and Historical Cartography of a Real Greenland: Constructing a Peircean Projection of this Place.
DOI: 10.5061/dryad.mw6m9064f
title: Data from: Bumblebees prefer sulfoxaflor contaminated food and show caste-specific differences in sulfoxaflor sensitivity

description: More than 30% of human food crop yield requires animal pollination. In
 addition, successful crop production depends on agrochemicals to control
 pests. However, agrochemicals can have negative consequences on beneficial
 insect pollinators, such as bees. We investigated the effects of an
 emerging class of pesticides, sulfoximines, on the common eastern
 bumblebee, Bombus impatiens. We performed a series of 96-hour toxicity
 tests on microcolonies of laboratory-reared B. impatiens. Our data showed
 that sulfoxaflor is significantly less toxic to B. impatiens than
 historically used neonicotinoid pesticides, such as thiamethoxam. Further,
 for the first time, we found significant differences among caste
 sensitivity to sulfoxaflor; workers and drones were more sensitive than
 queens. These findings are notable because they reveal both caste and
 sex-specific differences in bumblebee sensitivity to pesticides.
 Interestingly, we found no evidence that bumblebees avoid
 sulfoxaflor-contaminated sugar syrup. To the contrary, B. impatiens
 workers had an apparent preference for sulfoxaflor-contaminated sugar
 syrup over sugar syrup alone. Overall, our investigation provides novel
 information on an important pesticide and may help inform regulatory
 decisions regarding pesticide use.
description: # Bumblebees prefer sulfoxaflor contaminated food and show caste-specific
 differences in sulfoxaflor sensitivity
 [https://doi.org/10.5061/dryad.mw6m9064f](https://doi.org/10.5061/dryad.mw6m9064f) ## Description of the data and file structure The data is found in an excel document with five tabs: (1) SFX Acute Toxicity Workers, (2) SFX Acute Toxicity Queens, (3) SFX Acute Toxicity Drones,  (4) THX Acute Toxicity Workers, and (5) SFX Feeding Choice. The first four tabs contain survivorship data for the 96-hour acute toxicity tests for either sulfoxaflor or thiamethoxam performed on the three castes (queens, workers, and drones) of *Bombus impatiens* bumblebees. These four tabs include the following columns: * Sulfoxaflor or Thiamethoxam (mg/L): The concentration of SFX or THX in the nectar provided to the bees * Cage: Replicate number (1, 2, 3, 4, 5, 6, 7, or 8) * Number of Bees: number of bees in each cage at the beginning of the experiment * Number of Survivors: number of surviving bees from each cage after 96-hours  The last tab contains data on the SFX feeding choice experiment. This tab contains three columns: * Cage: Replicate number (1-18) * % Consumed Control Nectar: the % of the total weight of control nectar consumed over a 96 hour period per bee * % Consumed SFX Nectar: the % of the total weight of 0.4 mg/L SFX nectar consumed over a 96 hour period per bee
DOI: 10.15468/dl.hm7fq9
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 "TaxonKey is one of (Tremarctos ornatus [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 931 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003911-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/zdntqg
title: Trichomycterus anhanga, a new species of miniature catfish related to T. hasemani and T. johnsoni (Siluriformes: Trichomycteridae) from the Amazon basin, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dutra, Guilherme M., Wosiacki, Wolmar B., de Pinna, Mario C. C. (2012): Trichomycterus anhanga, a new species of miniature catfish related to T. hasemani and T. johnsoni (Siluriformes: Trichomycteridae) from the Amazon basin, Brazil. Neotropical Ichthyology 10 (2): 225-231, DOI: 10.1590/S1679-62252012000200001, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000200001&lng=en&tlng=enTrichomycterus anhanga is described from the Amazon basin, northern Brazil. The species is diagnosed by the latero-sensory system which is restricted to LL1 and LL2, the pectoral fin with two branched rays, the absence of pelvic fins and girdle, the reduced jaws and pharyngeal dentition, the presence of six to seven interopercular odontodes, the absence of a lateral series of spots, the presence of a small dark spot on the ventral surface of the mandibular symphysis, the narrow comma-shaped palatine, the absence of procurrent rays anterior to the dorsal and anal fins, the position of insertion of the first dorsal-fin pterygiophore and the presence of a single pair of pleural ribs. Trichomycterus anhanga shares with T. hasemani and T. johnsoni a wide cranial fontanel which occupies most of the skull roof. Miniaturization as well as synapomorphies for the T. hasemani group are discussed.Trichomycterus anhanga é descrita da bacia Amazônica, norte do Brasil. A espécie é diagnosticada pelo sistema láterosensorial restrito à LL1 e LL2, nadadeira peitoral com dois raios ramificados, ausência de nadadeiras e cintura pélvica, redução da dentição das maxilas e faringiana, presença de seis ou sete odontódeos no interopérculo, ausência de série lateral de manchas, presença de uma pequena mancha escura na superfície ventral da sínfise mandibular, palatino estreito, em forma de vírgula, ausência de raios vestigiais anteriores às nadadeiras dorsal e anal, inserção do primeiro pterigióforo da nadadeira dorsal e presença de um único par de costelas pleurais. Trichomycterus anhanga compartilha com T. hasemani e T. johnsoni a presença de fontanela craniana ampla, ocupando a maior parte do teto do crânio. A miniaturização e caracteres sinapomórficos para o grupo T. hasemani são discutidos.
DOI: 10.5061/dryad.7sqv9s50s
title: Quantitative analysis of honey bee blood-ethanol levels following exposure to ethanol vapors

description: The use of invertebrate models has allowed researchers to examine the
 mechanisms behind alcoholism and its effects with a cost-effective system.
 In that respect, the honey bee is an ideal model species to study the
 effects of ethanol (EtOH) due to the behavioural and physiological
 similarities of honey bees with humans when alcohol is consumed. Although
 both ingestion and inhalation methods are used to dose subjects in insect
 EtOH model systems, there is little literature on the use of the EtOH
 vapor-exposure method for experiments using honey bees. The experiment
 presented here provides baseline data for a dose EtOH-haemolymph response
 curve when using EtOH vapor-inhalation dosing with honey bees (Apis
 mellifera). Bees were exposed to EtOH vapors for 0, 1, 2.5, or 5 min, and
 haemolymph was collected 1 min post EtOH exposure. Haemolymph samples were
 analyzed using gas chromatography (GC) for haemolymph EtOH concentration.
 The ethanol-haemolymph level of the bees increased linearly with ethanol
 exposure time. The results provide a dosing guide for haemolymph EtOH
 level in the honey bee model ethanol-inhalation system, and thus makes the
 honey bee model more robust.
description: The data was collected as honey bee haemolymph through blood
 draws. The samples were analyzed through gas chromatography analysis.
  
description: # Quantitative analysis of honey bee blood-ethanol levels following
 exposure to ethanol vapors
 [https://doi.org/10.5061/dryad.7sqv9s50s](https://doi.org/10.5061/dryad.7sqv9s50s) The dataset contains the number of bees for each ethanol group in column A. The ethanol exposure groups are listed at the top of columns B-F. The values in columns B-F are ethanol haemolymph concentrations in mM. These values were acquired through gas chromatography analysis.
DOI: 10.5061/dryad.9zw3r22p2
title: Data from: preserved appendages in a Silurian binodicope: implications for the evolutionary history of ostracod crustaceans

description: Derima paparme gen. et sp. nov. from the Herefordshire Silurian
 Lagerstätte is one of only a handful of exceptionally preserved ostracod
 crustaceans known from the Palaeozoic. A male specimen provides the first
 evidence of the soft-part morphology of Binodicopina, a major group of
 Palaeozoic ostracods comprising some 135 Ordovician to Permian genera. The
 appendage morphology of D. paparme, but not its shell, indicates that
 binodicopes belong to Podocopa. The discovery that the soft-part
 morphology of binodicopes allies them with podocopes affirms that using
 the shell alone is an unreliable basis for classifying certain fossil
 ostracods and that knowledge of soft-part morphology is critical for the
 task. Current assignment of many fossil ostracods to higher taxa may
 require reconsideration.
description: Colour images obtained through digital microscope photography and
 serial grinding of specimen OUMNH PAL-C.36094, at 20 micron intervals. The
 method is detailed in Sutton et al. (2014). Images have been registered,
 but not processed in any other way. There are two datasets, representing
 the part and counterpart. 3D Model is presented as a
 VAXML/STL model, manually prepared from the image data using the SPIERS
 software suite, following the method of Sutton et al. (2014).
 Sutton, MD, Rahman, I, Garwood, RJ. 2014. <em>Techniques
 for Virtual Palaeontology</em>. Wiley, 218pp.
description: # Preserved appendages in a Silurian binodicope: implications for the
 evolutionary history of ostracod crustaceans
 [https://doi.org/10.5061/dryad.9zw3r22p2](https://doi.org/10.5061/dryad.9zw3r22p2) Serial-grinding tomography dataset and 3D model for holotype of *Derima paparme* (Euarthropoda, Ostracoda) from the Silurian of Herefordshire, UK. The specimen is accessioned in the Oxford University Museum of Natural History, OUMNH PAL-C.36094. ## Description of the data and file structure *Overview* Data comprises: (a) RGB images in bmp format representing tomographic datasets from 20-micron interval manual serial grinding. These have been registered and cropped to ROI. There are two parts, representing part and counterpart of the original specimen. All images are 450 pixels-per-mm. Part A has B (b) Mesh-models constructed from RGB images using the SPIERS software package, [http://spiers-software.org](http://spiers-software.org). These are in VAXML format (see also [http://spiers-software.org](http://spiers-software.org)) - they can be viewed using the SPIERsview element of the SPIERS software suite, or the STL files that comprise the model can be imported into any other mesh software. *Directory structure* The archive contains three zip achives. 'Model.zip' archive comprises: ·       one vaxml metadata file ·       one directory containing STL files describing morphology 'TomogramsA.zip' archives comprises 87 BMP image files (J009.bmp - J095.bmp). 'TomogramsB.zip' archives comprises 11 BMP image files (H005.bmp - H015.bmp).
DOI: 10.15468/dl.kn3p7k
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "CatalogNumber" : [
 "is one of (K-M000036354, K-M000036355, K-M000048784, K-M000067398, K-M000067641, K-M000067646, K-M000067663, K-M000067665, K-M000067683, K-M000067702, K-M000067721, K-M000068133, K-M000068145, K-M000068172, K-M000081495, K-M000083221, K-M000098650, K-M000122088, K-M000122116, K-M000138927, K-M000153678, K-M000154491, K-M000154496, K-M000154498, K-M000154504, K-M000154545, K-M000154564, K-M000177251, K-M000178414, K-M000193549, K-M000193552, K-M000193555, K-M000193559, K-M000193560, K-M000193561, K-M000193562, K-M000193564, K-M000195442, K-M000195447, K-M000195450, K-M000195451, K-M000195452, K-M000202890, K-M000202913, K-M000202914, K-M000202917, K-M000202918, K-M000202919, K-M000235135, K-M000235252, K-M000235254, K-M000235255, K-M000235257, K-M000235258, K-M000235264, K-M000707000, K-M000708856, K-M000764800, K-M000766417, K-M000769680, K-M000769745, K-M000769747, K-M000769752, K-M000769753, K-M000769754, K-M000769762, K-M000770171, K-M000770345, K-M000771046, K-M000771047)"
 ]
}

 The dataset includes 69 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003915-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18405812
title: Luminescence and paleoenvironmental data from the Lozada loess section, Pampean Plain, Argentina

description: This dataset presents luminescence and paleoenvironmental data from the Lozada loess section located on the Pampean Plain, Argentina. Luminescence measurements include equivalent doses, dose rates, and resulting ages used to establish the chronological framework of the section. Paleoenvironmental information includes stratigraphic, geochemical, magnetic, and dust accumulation parameters used to characterize sediment composition and environmental variability.
DOI: 10.5281/zenodo.18405811
title: Luminescence and paleoenvironmental data from the Lozada loess section, Pampean Plain, Argentina

description: This dataset presents luminescence and paleoenvironmental data from the Lozada loess section located on the Pampean Plain, Argentina. Luminescence measurements include equivalent doses, dose rates, and resulting ages used to establish the chronological framework of the section. Paleoenvironmental information includes stratigraphic, geochemical, magnetic, and dust accumulation parameters used to characterize sediment composition and environmental variability.
DOI: 10.5061/dryad.7wm37pw15
title: Climate change aggravates bird mortality in pristine tropical forests

description: Stable understory microclimates within undisturbed rainforests are
 commonly regarded as refugia against climate change. Yet, this assertion
 has rarely been tested, and contrasts with pervasive population declines
 observed for many bird species in Amazonian forests unaffected by
 landscape change or direct exploitation. We tested if population
 vulnerability of resident rainforest birds may stem from climatic effects,
 particularly during dry seasons with elevated temperatures and reduced
 rainfall. Data from 4264 individual bird captures collected over 27 years
 reveal strong negative consequences of harsher dry-season conditions on
 survival for 27 of 29 species; an increase of 1° C reduced the aggregate
 survival of the understory bird community by 34%. These results link
 climate change to demographic processes in the heart of Amazonian
 rainforest, raising doubts about the capacity of pristine rainforests to
 protect their unparalleled biodiversity under increasingly severe climate
 change.
description: Constant effort mist net data from the KM41 site in the
 Biological Dynamics of Forest Fragmentation Project (BDFFP). Each bird
 banding transect hosted a line of 16 mist-nets (NEBBA-type ATX, 36 mm
 mesh, 12x2.5 m), with nets set with the bottom at ground level and opened
 from 0600 to 1400 for a single day of sampling. All captured birds were
 banded with uniquely numbered aluminum bands. We mistnetted birds between
 May through October, from 1985 to 2012.
description: # Climate change aggravates bird mortality in pristine tropical forests
 [https://doi.org/10.5061/dryad.7wm37pw15](https://doi.org/10.5061/dryad.7wm37pw15) The data was conducted in *terra firme* forest at the Biological Dynamics of Forest Fragments Project (BDFFP), about 80 km north of Manaus, Brazil. Specifically, the dataset contains bird capture data from 20 banding transects within the KM41 control plot (pristine forest); for more information about the study site see Stouffer et al. (2006) and Stouffer (2020). Each bird banding transect hosted a line of 16 mist-nets (NEBBA-type ATX, 36 mm mesh, 12x2.5 m), with nets set with the bottom at ground level and opened from 0600 to 1400 for a single day of sampling. All captured birds were banded with uniquely numbered aluminum bands. We mistnetted birds between May through October, from 1985 to 2012. ## Description of the data and file structure Each page within the excel spreadsheet is a species. The first column is band number, second column is the species name, and each additional is a capture history by year where a '.' indicates no effort (mistnets were not operated), a '1' indicates that individual was captured that year, and a '0' indicates that individual was not captured that year.
DOI: 10.15468/dl.eedmq8
title: Occurrence Download

description: A dataset containing 6525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Doryopteris concolor"
 ]
}

 The dataset includes 6525 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003912-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxnqtf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 1.2321,45.9851 1.8496,44.9648 1.8496,44.9648 1.2321))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010049-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ppbw79
title: Occurrence Download

description: A dataset containing 7942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kajikia audax",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7942 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025433-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/s6gpnrmxg2
title: Development of a T cell- based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status. Yu et al

description: Additional Supplemental Items
DOI: 10.6084/m9.figshare.27220920.v3
title: Supplementary Files: "Taxonomy in the Light of Incongruence: An Updated Classification of Malvales and Malvaceae Based on Phylogenomic Data." Revised version, including added DNA voucher information and access links to download the raw FASTQ files used in this study.

description: Supplementary files associated to the submission of the manuscript "Taxonomy in the light of incongruence: an updated classification of Malvales and Malvaceae based on phylogenomic data" to TAXON. Revised version 1 submitted on October 13, 2024.