cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vdbcpb
title: Occurrence Download

description: A dataset containing 28268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aptenodytes forsteri G.R.Gray, 1844",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28268 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000226-150527152214153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105387
title: Geochemistry of porewater in sediment core GeoB1701-2
DOI: 10.1594/pangaea.105390
title: Geochemistry of porewater in sediment core GeoB1702-6
DOI: 10.1594/pangaea.105391
title: Geochemistry of porewater in sediment core GeoB1702-7
DOI: 10.1594/pangaea.105392
title: Geochemistry of porewater in sediment core GeoB1703-3
DOI: 10.1594/pangaea.105393
title: Geochemistry of porewater in sediment core GeoB1703-4
DOI: 10.15468/dl.xgcfn8
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Adoxophyes privatana (Walker, 1863)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 70 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029437-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105396
title: Geochemistry of porewater in sediment core GeoB1704-2
DOI: 10.1594/pangaea.105398
title: Geochemistry of porewater in sediment core GeoB1706-1
DOI: 10.15468/dl.ytdgsr
title: Occurrence Download

description: A dataset containing 700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoradendron villosum (Nutt.) Nutt. ex Engelm.",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-122 29,-122 38,-107 38,-107 29,-122 29))"
 ]
}

 The dataset includes 700 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000226-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105399
title: Geochemistry of porewater in sediment core GeoB1708-1
DOI: 10.1594/pangaea.105400
title: Geochemistry of porewater in sediment core GeoB1710-1
DOI: 10.15468/dl.b6sdeg
title: Occurrence Download

description: A dataset containing 18230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.7.3_2",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 18230 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000875-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105402
title: Geochemistry of porewater in sediment core GeoB1711-5
DOI: 10.1594/pangaea.105403
title: Geochemistry of porewater in sediment core GeoB1711-6
DOI: 10.1594/pangaea.105404
title: Geochemistry of porewater in sediment core GeoB1712-1
DOI: 10.1594/pangaea.114660
title: Geochemistry of porewater in sediment core GeoB1008-4
DOI: 10.15468/dl.9p9t3x
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "TaxonKey is Uraria picta (Jacq.) Desv. ex DC.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032203-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.114661
title: Geochemistry of porewater in sediment core GeoB1013-2
DOI: 10.1594/pangaea.114662
title: Geochemistry of porewater in sediment core GeoB1014-2
DOI: 10.15468/dl.mek2bd
title: Occurrence Download

description: A dataset containing 320816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Colombia, Ecuador)",
 "OccurrenceStatus is Present",
 "TaxonKey is Anura"
 ]
}

 The dataset includes 320816 records from 589 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013222-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.114663
title: Geochemistry of porewater in sediment core GeoB1015-2
DOI: 10.1594/pangaea.114664
title: Geochemistry of porewater in sediment core GeoB1015-3
DOI: 10.15468/dl.zjwbku
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Psidium guayava guayava",
 "TaxonKey is Psidium guaviroba DC.",
 "TaxonKey is Psidium guajava Raddi"
 ]
}

 The dataset includes 51 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000226-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105407
title: Geochemistry of porewater in sediment core GeoB1713-5
DOI: 10.1594/pangaea.114665
title: Geochemistry of porewater in sediment core GeoB1018-2
DOI: 10.1594/pangaea.105409
title: Geochemistry of porewater in sediment core GeoB1715-3
DOI: 10.1594/pangaea.105410
title: Geochemistry of porewater in sediment core GeoB1716-1
DOI: 10.15468/dl.wkr4y4
title: Occurrence Download

description: A dataset containing 3936750 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "GadmGid is one of (USA.18_1)"
 ]
}

 The dataset includes 3936750 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040879-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105411
title: Geochemistry of porewater in sediment core GeoB1719-4
DOI: 10.1594/pangaea.105414
title: Geochemistry of porewater in sediment core GeoB1720-3
DOI: 10.15468/dl.s4ja6j
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echeveria ×sayulensis E.Walther"
 ]
}

 The dataset includes 7 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186076-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105415
title: Geochemistry of porewater in sediment core GeoB1721-5
DOI: 10.1594/pangaea.105417
title: Geochemistry of porewater in sediment core GeoB1722-2
DOI: 10.1594/pangaea.105437
title: Geochemistry of porewater in sediment core GeoB2102-1
DOI: 10.15468/dl.v7tqu0
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heptapterus multiradiatus Ihering, 1907"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000226-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105438
title: Geochemistry of porewater in sediment core GeoB2104-1
DOI: 10.1594/pangaea.105440
title: Geochemistry of porewater in sediment core GeoB2105-3
DOI: 10.1594/pangaea.105441
title: Geochemistry of porewater in sediment core GeoB2106-1
DOI: 10.15468/dl.pcyvlk
title: Occurrence Download

description: A dataset containing 488637 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The cryptogamy collection (PC) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 488637 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023009-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105443
title: Geochemistry of porewater in sediment core GeoB2107-5
DOI: 10.1594/pangaea.105444
title: Geochemistry of porewater in sediment core GeoB2108-1
DOI: 10.15468/dl.co1xgi
title: Occurrence Download

description: A dataset containing 31175 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Reptilia",
 "TaxonKey is Anura",
 "TaxonKey is Caudata"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-96.987304 46.860191,-96.987304 38.582526,-81.123046 38.582526,-81.123046 46.860191,-96.987304 46.860191))"
 ]
}

 The dataset includes 31175 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000226-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105445
title: Geochemistry of porewater in sediment core GeoB2110-1
DOI: 10.1594/pangaea.105447
title: Geochemistry of porewater in sediment core GeoB2112-1
DOI: 10.15468/dl.g3f8qt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echeveria rodolfoi Mart.-Aval. & Mora-Olivo"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186073-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105466
title: Geochemistry of porewater in sediment core GeoB2703-7
DOI: 10.1594/pangaea.105467
title: Geochemistry of porewater in sediment core GeoB2704-1
DOI: 10.1594/pangaea.105469
title: Geochemistry of porewater in sediment core GeoB2705-7
DOI: 10.1594/pangaea.105470
title: Geochemistry of porewater in sediment core GeoB2706-6
DOI: 10.15468/dl.gxoqho
title: Occurrence Download

description: A dataset containing 1912 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1950-2018",
 "Geometry POLYGON((-111.30003 5.07486,-61.69997 5.07486,-61.69997 24.92514,-111.30003 24.92514,-111.30003 5.07486))",
 "HasCoordinate is true",
 "TaxonKey is Heteromys desmarestianus Gray, 1868",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1912 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009617-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.105471
title: Geochemistry of porewater in sediment core GeoB2707-4
DOI: 10.1594/pangaea.105473
title: Geochemistry of porewater in sediment core GeoB2708-5
DOI: 10.15468/dl.ct2qsg
title: Occurrence Download

description: A dataset containing 381231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2000-2010"
 ]
}

 The dataset includes 381231 records from 817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186067-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7697489
title: Additional data and code for "You can move, but you can't hide: identification of mobile genetic elements with geNomad"

description: <strong>benchmark_data:</strong> Data used to train and evaluate the classification models. <strong>giant_virus_data:</strong> Sequences and metadata of giant viruses identified in public metagenomes. <strong>neural_network_training:</strong> Code used to train geNomad's neural network-based classification model. <strong>provirus_data:</strong> Data used to train and evaluate the conditional random field model employed by geNomad to identify provirus regions. <strong>reference_sequences:</strong> Sequences of chromosomes, plasmids, and viruses that were used to build geNomad's marker dataset and to generate the training data for the classification models.
DOI: 10.5281/zenodo.7697490
title: Additional data and code for "You can move, but you can't hide: identification of mobile genetic elements with geNomad"

description: <strong>benchmark_data:</strong> Data used to train and evaluate the classification models. <strong>giant_virus_data:</strong> Sequences and metadata of giant viruses identified in public metagenomes. <strong>neural_network_training:</strong> Code used to train geNomad's neural network-based classification model. <strong>provirus_data:</strong> Data used to train and evaluate the conditional random field model employed by geNomad to identify provirus regions. <strong>reference_sequences:</strong> Sequences of chromosomes, plasmids, and viruses that were used to build geNomad's marker dataset and to generate the training data for the classification models.
DOI: 10.5281/zenodo.8049246
title: Additional data and code for "You can move, but you can't hide: identification of mobile genetic elements with geNomad"

description: <strong>benchmark_data:</strong> Data used to train and evaluate the classification models. <strong>giant_virus_data:</strong> Sequences and metadata of giant viruses identified in public metagenomes. <strong>neural_network_training:</strong> Code used to train geNomad's neural network-based classification model. <strong>provirus_data:</strong> Data used to train and evaluate the conditional random field model employed by geNomad to identify provirus regions. <strong>reference_sequences:</strong> Sequences of chromosomes, plasmids, and viruses that were used to build geNomad's marker dataset and to generate the training data for the classification models.
DOI: 10.34740/kaggle/dsv/5951706
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.6084/m9.figshare.13532984
title: Additional file 1 of Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors

description: Additional file 1. Differentially expressed IRGs of limma results.
DOI: 10.6084/m9.figshare.13532984.v1
title: Additional file 1 of Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors

description: Additional file 1. Differentially expressed IRGs of limma results.
DOI: 10.6084/m9.figshare.13532966
title: Additional file 7 of Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

description: Additional file 7: Table S5. Haplotype and phenotype association analysis of candidate genes in High AGs and Low AGs. Note: unit, cm
DOI: 10.6084/m9.figshare.13532987
title: Additional file 2 of Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors

description: Additional file 2. Differentially expressed IRGs of edgeR results.
DOI: 10.6084/m9.figshare.13532966.v1
title: Additional file 7 of Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

description: Additional file 7: Table S5. Haplotype and phenotype association analysis of candidate genes in High AGs and Low AGs. Note: unit, cm
DOI: 10.6084/m9.figshare.13532969
title: Additional file 8 of Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

description: Additional file 8: Table S6. qRT-PCR primer sequences of four candidate genes
DOI: 10.6084/m9.figshare.13532987.v1
title: Additional file 2 of Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors

description: Additional file 2. Differentially expressed IRGs of edgeR results.
DOI: 10.6084/m9.figshare.13532969.v1
title: Additional file 8 of Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

description: Additional file 8: Table S6. qRT-PCR primer sequences of four candidate genes
DOI: 10.6084/m9.figshare.13532972
title: Additional file 9 of Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

description: Additional file 9: Table S7. qRT-PCR expression profile of four most promising candidate genes in different oxygen environments
DOI: 10.6084/m9.figshare.13532972.v1
title: Additional file 9 of Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice

description: Additional file 9: Table S7. qRT-PCR expression profile of four most promising candidate genes in different oxygen environments
DOI: 10.6084/m9.figshare.13533109
title: Additional file 2 of Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

description: Additional file 2: Table S1. Detailed information of Dataset 1. Table S2. Detailed information of Dataset 2. Table S3. Detailed information of Dataset 3. Table S4. Detailed information of Dataset 4. Table S5. Detailed information of Dataset 5. Table S6. Healthy status classification result of original and calibrated amplicon samples by WGS-based classification.
DOI: 10.6084/m9.figshare.13533109.v1
title: Additional file 2 of Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function

description: Additional file 2: Table S1. Detailed information of Dataset 1. Table S2. Detailed information of Dataset 2. Table S3. Detailed information of Dataset 3. Table S4. Detailed information of Dataset 4. Table S5. Detailed information of Dataset 5. Table S6. Healthy status classification result of original and calibrated amplicon samples by WGS-based classification.
DOI: 10.34740/kaggle/dsv/7702736
title: Contrastive Language Image Pretraining by openai
DOI: 10.6084/m9.figshare.21921830
title: Identification of major hub genes involved in high-fat diet-induced obese visceral adipose tissue based on bioinformatics approach

description: High-fat diet (HFD) can cause obesity, inducing dysregulation of the visceral adipose tissue (VAT). This study aimed to explore potential biological pathways and hub genes involved in obese VAT, and for that, bioinformatic analysis of multiple datasets was performed. The expression profiles (GSE30247, GSE167311 and GSE79434) were downloaded from Gene Expression Omnibus. Overlapping differentially expressed genes (ODEGs) between normal diet and HFD groups in GSE30247 and GSE167311 were selected to run protein–protein interaction network, GO and KEGG analysis. The hub genes in ODEGs were screened by Cytoscape software and further verified in GSE79434 and obese mouse model. A total of 747 ODEGs (599 up-regulated and 148 down-regulated) were screened, and the GO and KEGG analysis showed that the up-regulated ODEGs were significantly enriched in inflammatory response and extracellular matrix receptor interaction pathways. On the other hand, the down-regulated ODEGs were involved in metabolic pathways; however, there were no significant KEGG pathways. Furthermore, six hub genes, Mki67, Rac2, Itgb2, Emr1, Tyrobp and Csf1r were acquired. These pathways and genes were verified in GSE79434 and VAT of obese mice. This study revealed that HFD induced VAT expansion, inflammation and fibrosis, and the hub genes could be used as therapeutic biomarkers in obesity.
DOI: 10.6084/m9.figshare.21921830.v1
title: Identification of major hub genes involved in high-fat diet-induced obese visceral adipose tissue based on bioinformatics approach

description: High-fat diet (HFD) can cause obesity, inducing dysregulation of the visceral adipose tissue (VAT). This study aimed to explore potential biological pathways and hub genes involved in obese VAT, and for that, bioinformatic analysis of multiple datasets was performed. The expression profiles (GSE30247, GSE167311 and GSE79434) were downloaded from Gene Expression Omnibus. Overlapping differentially expressed genes (ODEGs) between normal diet and HFD groups in GSE30247 and GSE167311 were selected to run protein–protein interaction network, GO and KEGG analysis. The hub genes in ODEGs were screened by Cytoscape software and further verified in GSE79434 and obese mouse model. A total of 747 ODEGs (599 up-regulated and 148 down-regulated) were screened, and the GO and KEGG analysis showed that the up-regulated ODEGs were significantly enriched in inflammatory response and extracellular matrix receptor interaction pathways. On the other hand, the down-regulated ODEGs were involved in metabolic pathways; however, there were no significant KEGG pathways. Furthermore, six hub genes, Mki67, Rac2, Itgb2, Emr1, Tyrobp and Csf1r were acquired. These pathways and genes were verified in GSE79434 and VAT of obese mice. This study revealed that HFD induced VAT expansion, inflammation and fibrosis, and the hub genes could be used as therapeutic biomarkers in obesity.
DOI: 10.57967/hf/1814
title: SCRDataSet
DOI: 10.5517/ccdc.csd.cc1zqyl7
title: CCDC 1839310: Experimental Crystal Structure Determination

description: Related Article: Ramesh Bokam, Mangala Gowri Ponnapalli,  L Raju Chowhan|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.11960412
title: Additional file 1 of Next-generation sequencing identified novel Desmoplakin frame-shift variant in patients with Arrhythmogenic cardiomyopathy

description: Additional file 1. Next generation sequencing results of the propand.
DOI: 10.6084/m9.figshare.11960412.v1
title: Additional file 1 of Next-generation sequencing identified novel Desmoplakin frame-shift variant in patients with Arrhythmogenic cardiomyopathy

description: Additional file 1. Next generation sequencing results of the propand.
DOI: 10.6084/m9.figshare.13533362
title: Additional file 4 of Prognostic factors of non-muscle invasive bladder cancer: a study based on next-generation sequencing

description: Additional file 4: Original dataset.
DOI: 10.6084/m9.figshare.13533362.v1
title: Additional file 4 of Prognostic factors of non-muscle invasive bladder cancer: a study based on next-generation sequencing

description: Additional file 4: Original dataset.