cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29218692
title: Coriander borne <i>Salmonella</i> superbug: genomic assessments of chromosomal and plasmid-associated resistance, virulence and MGEs of XDR <i>Salmonella</i> enterica Typhi NH1

description: The drug-resistant strains of <i>Salmonella</i> enterica serovar Typhi (<i>S</i>. Typhi) are serious threats to health sectors worldwide. This study focuses on genomic characterization of environmentally derived an extensively drug resistant (XDR) strain of <i>Salmonella</i> Typhi, highlighting its potential to cause significant outbreak. The XDR strain (labeled as NH1) was isolated from fresh coriander, and characterized through whole-genome sequencing to investigate its lineage diversity, niche adaptation, sources and resistant mechanism. The NH1 strain exhibits phylogenomic association with clinical lineages <i>S</i>. Typhi NCTC8385 and ASM3025476. Its genome, assembled in 67 contigs, exhibited expected coverage and GC content, harboring a mega-plasmid, virulence factors, and intrinsic and extrinsic antimicrobial resistance genes. Plasmid annotation revealed IncQ1 and IncY plasmids responsible for the acquired resistance. SPIFinder identified SPI1–10 pathogenicity islands, and the CRISPR-Cas locus, associated with bacterial defense, bile salt resistance and biofilm formation, was present. NH1 strain also possesses numerous mobile elements (proteins and transposases), 12 prophages, and secretion systems (types I-IV, VI), aiding its survival in environment like vegetables. The genomic characterization of <i>S</i>. Typhi NH1 highlights the emergence of coriander-borne XDR strain, underscoring the need for targeted prevention to mitigate its public health impact.
DOI: 10.6084/m9.figshare.29218692.v2
title: Coriander borne <i>Salmonella</i> superbug: genomic assessments of chromosomal and plasmid-associated resistance, virulence and MGEs of XDR <i>Salmonella</i> enterica Typhi NH1

description: The drug-resistant strains of <i>Salmonella</i> enterica serovar Typhi (<i>S</i>. Typhi) are serious threats to health sectors worldwide. This study focuses on genomic characterization of environmentally derived an extensively drug resistant (XDR) strain of <i>Salmonella</i> Typhi, highlighting its potential to cause significant outbreak. The XDR strain (labeled as NH1) was isolated from fresh coriander, and characterized through whole-genome sequencing to investigate its lineage diversity, niche adaptation, sources and resistant mechanism. The NH1 strain exhibits phylogenomic association with clinical lineages <i>S</i>. Typhi NCTC8385 and ASM3025476. Its genome, assembled in 67 contigs, exhibited expected coverage and GC content, harboring a mega-plasmid, virulence factors, and intrinsic and extrinsic antimicrobial resistance genes. Plasmid annotation revealed IncQ1 and IncY plasmids responsible for the acquired resistance. SPIFinder identified SPI1–10 pathogenicity islands, and the CRISPR-Cas locus, associated with bacterial defense, bile salt resistance and biofilm formation, was present. NH1 strain also possesses numerous mobile elements (proteins and transposases), 12 prophages, and secretion systems (types I-IV, VI), aiding its survival in environment like vegetables. The genomic characterization of <i>S</i>. Typhi NH1 highlights the emergence of coriander-borne XDR strain, underscoring the need for targeted prevention to mitigate its public health impact.
DOI: 10.3535/2sk-d1c-dnx
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lc2-m8l-pdj
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29218692.v1
title: Coriander borne <i>Salmonella</i> superbug: genomic assessments of chromosomal and plasmid-associated resistance, virulence and MGEs of XDR <i>Salmonella</i> enterica Typhi NH1

description: The drug-resistant strains of <i>Salmonella</i> enterica serovar Typhi (<i>S</i>. Typhi) are serious threats to health sectors worldwide. This study focuses on genomic characterization of environmentally derived an extensively drug resistant (XDR) strain of <i>Salmonella</i> Typhi, highlighting its potential to cause significant outbreak. The XDR strain (labeled as NH1) was isolated from fresh coriander, and characterized through whole-genome sequencing to investigate its lineage diversity, niche adaptation, sources and resistant mechanism. The NH1 strain exhibits phylogenomic association with clinical lineages <i>S</i>. Typhi NCTC8385 and ASM3025476. Its genome, assembled in 67 contigs, exhibited expected coverage and GC content, harboring a mega-plasmid, virulence factors, and intrinsic and extrinsic antimicrobial resistance genes. Plasmid annotation revealed IncQ1 and IncY plasmids responsible for the acquired resistance. SPIFinder identified SPI1–10 pathogenicity islands, and the CRISPR-Cas locus, associated with bacterial defense, bile salt resistance and biofilm formation, was present. NH1 strain also possesses numerous mobile elements (proteins and transposases), 12 prophages, and secretion systems (types I-IV, VI), aiding its survival in environment like vegetables. The genomic characterization of <i>S</i>. Typhi NH1 highlights the emergence of coriander-borne XDR strain, underscoring the need for targeted prevention to mitigate its public health impact.
DOI: 10.3535/jqh-94x-r8f
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l0e-7rv-6tl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ass-n54-q59
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7w-v05-49d
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lf7-2q3-ecj
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.jq89f5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salmo trutta",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019646-250811113504898/datasets/export for details.
DOI: 10.3535/l25-rbl-fac
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tmp-pmz-pf5
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l99-nfb-yjy
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7v-tyk-yrr
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nrc-drr-j8f
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fr9-jvk-h9h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ggx-fgz-jc9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tab-xky-xaf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ce9-xj8-1bf
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j46-y66-xz1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/asd-079-zed
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/js4-jp6-cym
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hg6-c8r-5q2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5517/cc7wwkj
title: CCDC 235338: Experimental Crystal Structure Determination

description: Related Article: D.E.Turkington, G.Ferguson, A.J.Lough, C.Glidewell|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o183|doi:10.1107/S0108270104000939
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwlk
title: CCDC 235339: Experimental Crystal Structure Determination

description: Related Article: J.N.Low, J.Cobo, C.Cisneros, J.Quiroga, C.Glidewell|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o186|doi:10.1107/S0108270104001489
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwml
title: CCDC 235340: Experimental Crystal Structure Determination

description: Related Article: J.N.Low, J.Cobo, C.Cisneros, J.Quiroga, C.Glidewell|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o186|doi:10.1107/S0108270104001489
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwnm
title: CCDC 235341: Experimental Crystal Structure Determination

description: Related Article: J.N.Low, J.Cobo, S.Cruz, J.Quiroga, C.Glidewell|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o191|doi:10.1107/S0108270104001118
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwpn
title: CCDC 235342: Experimental Crystal Structure Determination

description: Related Article: J.N.Low, J.Cobo, R.Abonia, J.Quiroga, C.Glidewell|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o194|doi:10.1107/S0108270104000678
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwqp
title: CCDC 235343: Experimental Crystal Structure Determination

description: Related Article: B.Olesen, M.R.Bond|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o196|doi:10.1107/S0108270104000332
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwrq
title: CCDC 235344: Experimental Crystal Structure Determination

description: Related Article: D.E.Janzen, K.R.Mann|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o198|doi:10.1107/S0108270104000356
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwsr
title: CCDC 235345: Experimental Crystal Structure Determination

description: Related Article: C.Didierjean, J.Marin, E.Wenger, J.-P.Briand, A.Aubry, G.Guichard|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o200|doi:10.1107/S0108270103024053
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwts
title: CCDC 235346: Experimental Crystal Structure Determination

description: Related Article: C.Didierjean, J.Marin, E.Wenger, J.-P.Briand, A.Aubry, G.Guichard|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o200|doi:10.1107/S0108270103024053
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwvt
title: CCDC 235347: Experimental Crystal Structure Determination

description: Related Article: C.Didierjean, J.Marin, E.Wenger, J.-P.Briand, A.Aubry, G.Guichard|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o204|doi:10.1107/S0108270103024065
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ujkmbe
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calophya schini",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018280-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc7wwwv
title: CCDC 235348: Experimental Crystal Structure Determination

description: Related Article: C.Didierjean, J.Marin, E.Wenger, J.-P.Briand, A.Aubry, G.Guichard|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o204|doi:10.1107/S0108270103024065
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwxw
title: CCDC 235349: Experimental Crystal Structure Determination

description: Related Article: C.Nygren, Tianniu Chen, Sanbao Zhong, C.Kaczmarek, J.F.C.Turner, D.C.Baker|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o208|doi:10.1107/S0108270104001659
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wwyx
title: CCDC 235350: Experimental Crystal Structure Determination

description: Related Article: C.Nygren, Tianniu Chen, Sanbao Zhong, C.Kaczmarek, J.F.C.Turner, D.C.Baker|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o208|doi:10.1107/S0108270104001659
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.9bgq7m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Casuariiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((100 -40,110 -40,110 -30,100 -30,100 -40))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018282-251009101135966/datasets/export for details.
DOI: 10.5517/cc7wwzy
title: CCDC 235351: Experimental Crystal Structure Determination

description: Related Article: J.Janczak, G.J.Perpetuo|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o211|doi:10.1107/S0108270104002227
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wx00
title: CCDC 235352: Experimental Crystal Structure Determination

description: Related Article: M.Gdaniec, I.Bensemann, T.Polonski|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o215|doi:10.1107/S010827010400068X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wx11
title: CCDC 235353: Experimental Crystal Structure Determination

description: Related Article: V.N.Sonar, S.Parkin, P.A.Crooks|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o217|doi:10.1107/S0108270104002550
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wx22
title: CCDC 235354: Experimental Crystal Structure Determination

description: Related Article: A.Choudhury, K.Nagarajan, T.N.Guru Row|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o219|doi:10.1107/S0108270104002707
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7wx33
title: CCDC 235355: Experimental Crystal Structure Determination

description: Related Article: A.Choudhury, K.Nagarajan, T.N.Guru Row|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|o219|doi:10.1107/S0108270104002707
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7y60c
title: CCDC 236592: Experimental Crystal Structure Determination

description: Related Article: T.Loiseau, G.Ferey|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|i30|doi:10.1107/S010827010400071X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc6vwnk
title: CCDC 204589: Experimental Crystal Structure Determination

description: Related Article: K.K.Mothilal, C.Karunakaran, A.Rajendran, R.Murugesan|2004|J.Inorg.Biochem.|98|322|doi:10.1016/j.jinorgbio.2003.10.017
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc794zm
title: CCDC 217340: Experimental Crystal Structure Determination

description: Related Article: C.A.Knoop, A.Studer|2003|J.Am.Chem.Soc.|125|16327|doi:10.1021/ja037948o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7950p
title: CCDC 217341: Experimental Crystal Structure Determination

description: Related Article: C.A.Knoop, A.Studer|2003|J.Am.Chem.Soc.|125|16327|doi:10.1021/ja037948o
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7ww21
title: CCDC 235323: Experimental Crystal Structure Determination

description: Related Article: U.Kolitsch|2004|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|60|m129|doi:10.1107/S0108270104001945
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.