cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2fzcrk
title: CCDC 2263519: Experimental Crystal Structure Determination

description: Related Article: Yi-Ping Qu, Xin-Da Huang, Kui Xu, Song-Song Bao, Li-Min Zheng|2023|Dalton Trans.|52|10489|doi:10.1039/D3DT01542D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzcsl
title: CCDC 2263520: Experimental Crystal Structure Determination

description: Related Article: Yi-Ping Qu, Xin-Da Huang, Kui Xu, Song-Song Bao, Li-Min Zheng|2023|Dalton Trans.|52|10489|doi:10.1039/D3DT01542D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29kh8n
title: CCDC 2131971: Experimental Crystal Structure Determination

description: Related Article: Shao-Liang Zhang, Yu-Wen Liu, Cai-Ran Yue, Xin-Hua Zhao, Yan-Lan Wang, Shan-Shan Li|2023|New J.Chem.|47|14528|doi:10.1039/D3NJ02304D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g01cx
title: CCDC 2264158: Experimental Crystal Structure Determination

description: Related Article: Matej Žabka, Jonathan Clayden|2023|Org.Biomol.Chem.|21|5939|doi:10.1039/D3OB00811H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g0w7m
title: CCDC 2264960: Experimental Crystal Structure Determination

description: Related Article: Anthony P. Deziel, Sahil Gahlawat, Nilay Hazari, Kathrin H. Hopmann, Brandon Q. Mercado|2023|Chemical Science|14|8164|doi:10.1039/D3SC01459B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g1rkv
title: CCDC 2265807: Experimental Crystal Structure Determination

description: Related Article: Sonakshi Sasan, Annah Gupta, Kamal K. Kapoor, Pratik Dey, Saikat Kumar Seth|2023|J.Mol.Struct.|1293|136255|doi:10.1016/j.molstruc.2023.136255
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tfcx
title: CCDC 2109809: Experimental Crystal Structure Determination

description: Related Article: Shan Huang, Vinay K. R. Cheemarla, Davide Tiana, Simon E. Lawrence|2023|Cryst.Growth Des.|23|5446|doi:10.1021/acs.cgd.2c01403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tfdy
title: CCDC 2109810: Experimental Crystal Structure Determination

description: Related Article: Shan Huang, Vinay K. R. Cheemarla, Davide Tiana, Simon E. Lawrence|2023|Cryst.Growth Des.|23|5446|doi:10.1021/acs.cgd.2c01403
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21227/898s-rd37
title: BalanSENS: Robotic platform system for balance analysis, rehabilitation and assistance with feedforward and feedback signals

description: This data set is the data of the studies carried out in the article named "BalanSENS: Robotic platform system for balance analysis, rehabilitation and assistance with feedforward and feedback signals". BalanSENS is devised to embrace an approach that promotes active engagement by amalgamating diverse sensory inputs to enhance both sensory and motor functions. Its capacity to personalize balance rehabilitation for each individual is accomplished through a three-phase framework. The attributes of the servo motors are assessed to demonstrate their suitability for I-BaR. Furthermore, functional evaluations involving a healthy participant demonstrated promising results in quantifying force and real-time data monitoring during rehabilitation.
DOI: 10.5281/zenodo.8274300
title: agapornis_swindernianus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8274299
title: agapornis_swindernianus_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8274319
title: agave_potatorum_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8274318
title: agave_potatorum_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8270379
title: siren_sphagnicola_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8270378
title: siren_sphagnicola_decontaminated_gx.fasta.gz

description: .
DOI: 10.5519/qd.ftvmguio
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (33 records)
DOI: 10.5281/zenodo.8274327
title: siren_sphagnicola_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.8274326
title: siren_sphagnicola_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.24010668
title: Group 5 Codebook

description: Codebook for a questionnaire on Blended Learning.
DOI: 10.6084/m9.figshare.24010668.v1
title: Group 5 Codebook

description: Codebook for a questionnaire on Blended Learning.
DOI: 10.6075/j08913sz
title: Data from: The Agricultural Productivity Gap

description: STUDY ABSTRACT: According to national accounts data, value added per worker is much higher in the nonagricultural sector than in agriculture in the typical country, and particularly so in developing countries. Taken at face value, this “agricultural productivity gap” suggests that labor is greatly misallocated across sectors. In this paper, we draw on new micro evidence to ask to what extent the gap is still present when better measures of sector labor inputs and value added are taken into consideration. We find that even after considering sector differences in hours worked and human capital per worker, as well as alternative measures of sector output constructed from household survey data, a puzzlingly large gap remains.
DOI: 10.25345/c5930p54s
title: MassIVE MSV000092721 - Proteomic analysis of chloroplast proteins of soybean plants in response to silicon application
title: Drought is a major environmental factor limiting crop productivity. Considering a significant area of crop production under water-limited rain-fed conditions, there is a great need to develop production systems to sustain yield potentials under water deficit stress. We have shown that supplying soybean with soluble silicon in the soil could improve vegetative growth and biomass production under water limiting conditions. However, the mechanism how silicon alleviates water deficit stress is not understood. In this study, we examined the effects of silicon application on the expression of chloroplast proteins. Soybean plants were grown in soil-containing pots supplied with 3 millimolar solution of sodium silicate. To cancel the effect of sodium, same amount of sodium chloride was used along with control plants. Intact chloroplasts were isolated from the leaves of silicon-treated and control plants subjected to water deficit stress. Proteins were then prepared from isolated chloroplasts. Two-dimensional gel electrophoresis and mass spectrometry approaches were used to identify differential chloroplast proteins in response to silicon application under water deficit stress. Proteins that shown differential expression in response to silicon application include photosynthetic proteins and enzymes. These results suggest that silicon application could affect enzymes important for photosynthesis and stabilize photosynthetic proteins and enzymes under water deficit stress.
DOI: 10.6075/j0td9v7x
title: Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development

description: Data are deposited here from RNA-Seq transcriptomic experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions. BAM, BAI and TDF files are uploaded from three independent biological replicates that we conducted for wild type and carbonic anhydrase mutant seedlings. Each set of replicates includes &gt;1000 seedlings per sample and both genotypes were grown at low and elevated CO2 (hence 4 samples per set of replicates). Sampling was done at 5 days after germination to capture early signaling events as seedlings were adapting to the CO2 stimulus. This project was funded by grants from the National Science Foundation (MCB0918220 and MCB1414339 to J.I.S. and IOS-1025837 to S.C.P.) and the National Institutes of Health (GM060396-ES010337 to J.I.S.), a BAYER-UC Discovery grant (J.I.S.) and a seed grant from the UCSD-SDCSB (GM085764) Systems Biology Center (C.B.E.). A grant from the Division of Chemical Sciences, Geosciences, and Biosciences, Office of Basic Energy Sciences of the US Department of Energy (DE-FG02-03ER15449) to J.I.S. funded complementation and localization analyses.
DOI: 10.5281/zenodo.8270680
title: Time and depth resolved archaea amoA genes at Station ALOHA

description: This dataset contains amoA gene abundances from Station ALOHA, the long-term ocean field site in the subtropical North Pacific. Whole seawater samples from six discrete depths (5, 25, 45, 75, 100, 125, 150, and 175 m) were collected on near-monthly Hawaii Ocean Time-series (HOT) program cruises. Seawater was filtered onto 0.2 mm pore size Supor filters to concentrate plankton biomass. DNA from filters was subsequently extracted using a Qiagen Plant and Tissue kit, with archaeal amoA genes quantified using digital droplet PCR (ddPCR) with the EvaGreen Mastermix. Two different sets of ddPCR primers were used for gene quantification by ddPCR: one primer set targeted amoA genes deriving from members of the Thaumarchea often termed “Group A”, while the other primer set targeted amoA genes deriving from Thaumarchea termed “Group B” (Beman JM, Popp BN, Francis CA. Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2008 Apr;2(4):429-41. doi: 10.1038/ismej.2007.118.). Gene lower detection limits were determined as 3x the standard deviation of no template control reactions (nuclease-free water added instead of environmental DNA). The time stamp indicates the time of sample collection (when the hydrocast went into the water) and is reported in UTC.
description: {"references": ["Beman JM, Popp BN, Francis CA. Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2008 Apr;2(4):429-41. doi: 10.1038/ismej.2007.118."]}
DOI: 10.5281/zenodo.8270679
title: Time and depth resolved archaea amoA genes at Station ALOHA

description: This dataset contains amoA gene abundances from Station ALOHA, the long-term ocean field site in the subtropical North Pacific. Whole seawater samples from six discrete depths (5, 25, 45, 75, 100, 125, 150, and 175 m) were collected on near-monthly Hawaii Ocean Time-series (HOT) program cruises. Seawater was filtered onto 0.2 mm pore size Supor filters to concentrate plankton biomass. DNA from filters was subsequently extracted using a Qiagen Plant and Tissue kit, with archaeal amoA genes quantified using digital droplet PCR (ddPCR) with the EvaGreen Mastermix. Two different sets of ddPCR primers were used for gene quantification by ddPCR: one primer set targeted amoA genes deriving from members of the Thaumarchea often termed “Group A”, while the other primer set targeted amoA genes deriving from Thaumarchea termed “Group B” (Beman JM, Popp BN, Francis CA. Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2008 Apr;2(4):429-41. doi: 10.1038/ismej.2007.118.). Gene lower detection limits were determined as 3x the standard deviation of no template control reactions (nuclease-free water added instead of environmental DNA). The time stamp indicates the time of sample collection (when the hydrocast went into the water) and is reported in UTC.
description: {"references": ["Beman JM, Popp BN, Francis CA. Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2008 Apr;2(4):429-41. doi: 10.1038/ismej.2007.118."]}
DOI: 10.5281/zenodo.8274272
title: Validation of Fracture Caging to Contain Hydraulic Fractures: Timeseries, Videos, and Model Script

description: The data file include an Excel spreadsheet and two videos for each experimental test. You can start with reading the ReadMeFirst.txt file to understand the whole structure of the dataset. The caging_model.txt file includes python codes to calculate critical flow rates and uncaged fracture radius according to the theory that the authors developed and will be published soon.
description: This work is provided by Los Alamos National Laboratory's Laboratory Directed Research and Development – Exploratory Research program under LDRD-ER-20220175ER.
DOI: 10.3886/e185081
title: Code for: Imperfect Financial Markets and Investment Inefficiencies

description: This code repository for "Imperfect Financial Markets and Investment Inefficiencies" contains two matlab files that were used to produce figures 1, 3 and 5 of our manuscript. The paper does not involve analysis of external data.
DOI: 10.3886/e185081v1
title: Code for: Imperfect Financial Markets and Investment Inefficiencies

description: This code repository for "Imperfect Financial Markets and Investment Inefficiencies" contains two matlab files that were used to produce figures 1, 3 and 5 of our manuscript. The paper does not involve analysis of external data.
DOI: 10.35077/age-had
title: Vib_2_Fly_3: Whole brain confocal imaging of fly driver line C155-GAL4, UAS-nSyb.eGFP (red channel) with the indicated bristle dye filled using DiD (green channel)

description: Confocal z-stacks (.tiff stacks) of single labeled mechanosensory neurons that innervate specific bristles on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by dye filling from specific head bristles using the dye DiD. The processed images of the BMNs are published in Figure 4 and Figure 4 – figure supplements 1-5 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the specific bristle filled (e.g. Oc or Ant_1 bristles) and the individual fly that was tested (e.g. Fly_1 and Fly_2).
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'Vib_2_Fly_3: Whole brain confocal imaging of fly driver line C155-GAL4, UAS-nSyb.eGFP (red channel) with the indicated bristle dye filled using DiD (green channel)', GeneralModality:'other', Technique:'other', Other:'Bristle dye fill' SPECIMEN METADATA: LocalID:'Vib_2_Fly_3', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w, C155-GAL4, UAS-nSyb.e GFP', OrganName:'Brain', SampleLocalID:'20190404_VH_major_2_left_brain1_DID', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.35077/age-has
title: Vib_3_Fly_1: Whole brain confocal imaging of fly driver line C155-GAL4, UAS-nSyb.eGFP (red channel) with the indicated bristle dye filled using DiD (green channel)

description: Confocal z-stacks (.tiff stacks) of single labeled mechanosensory neurons that innervate specific bristles on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by dye filling from specific head bristles using the dye DiD. The processed images of the BMNs are published in Figure 4 and Figure 4 – figure supplements 1-5 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the specific bristle filled (e.g. Oc or Ant_1 bristles) and the individual fly that was tested (e.g. Fly_1 and Fly_2).
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'Vib_3_Fly_1: Whole brain confocal imaging of fly driver line C155-GAL4, UAS-nSyb.eGFP (red channel) with the indicated bristle dye filled using DiD (green channel)', GeneralModality:'other', Technique:'other', Other:'Bristle dye fill' SPECIMEN METADATA: LocalID:'Vib_3_Fly_1', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w, C155-GAL4, UAS-nSyb.e GFP', OrganName:'Brain', SampleLocalID:'20190629_VH_major_3_left_brain_5_DID_nsyb_GFP', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.35077/age-hat
title: Vib_3_Fly_2: Whole brain confocal imaging of fly driver line C155-GAL4, UAS-nSyb.eGFP (red channel) with the indicated bristle dye filled using DiD (green channel)

description: Confocal z-stacks (.tiff stacks) of single labeled mechanosensory neurons that innervate specific bristles on the Drosophila melanogaster head. The bristle mechanosensory neurons (BMNs) were labeled by dye filling from specific head bristles using the dye DiD. The processed images of the BMNs are published in Figure 4 and Figure 4 – figure supplements 1-5 of the manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”. The confocal stacks used to produce these images are organized based on the specific bristle filled (e.g. Oc or Ant_1 bristles) and the individual fly that was tested (e.g. Fly_1 and Fly_2).
description: A full protocol describing this work is available in the associated manuscript at manuscript “Somatotopic organization among parallel sensory pathways that promote a grooming sequence in Drosophila (https://doi.org/10.1101/2023.02.11.528119)”.
description: DATASET METADATA: title:'Vib_3_Fly_2: Whole brain confocal imaging of fly driver line C155-GAL4, UAS-nSyb.eGFP (red channel) with the indicated bristle dye filled using DiD (green channel)', GeneralModality:'other', Technique:'other', Other:'Bristle dye fill' SPECIMEN METADATA: LocalID:'Vib_3_Fly_2', Species:'Fruit fly', NCBITaxonomy:'NCBI:txid7227', Age:'5 to 8', Ageunit:'Days', Sex:'Male', Genotype:'w, C155-GAL4, UAS-nSyb.e GFP', OrganName:'Brain', SampleLocalID:'20190511_VH_major_3_left_and_off_target_brain_2_DID_nsyb_eGPF', Locations:'Subesophageal zone (SEZ)' INSTRUMENT METADATA: MicroscopeType:'Confocal', MicroscopeManufacturerAndModel:'Zeiss LSM 800 Axio Imager.Z2', ObjectiveName:'Zeiss 20x objective (Plan-Apochromat 20x/0.8)', ObjectiveNA:'0.8', ObjectiveMagnification:'20x' IMAGE METADATA: xAxis:'left-to-right', yAxis:'left-to-right', zAxis:'left-to-right', Number:'1,2,red,green', displayColor:'(1.0, 0.0, 0.0),(0.0, 1.0, 0.0)', stepSizeX:'0.6239', stepSizeY:'0.6239'
DOI: 10.34740/kaggle/dsv/6347969
title: french dialogs
DOI: 10.6084/m9.figshare.23696715.v1
title: Blood alcohol concentration as a measure of risk among pedestrian fatalities in the U.S., 2016–2020

description: In the United States, deaths among pedestrians have increased dramatically since 2009 relative to other vulnerable road users, with substance use described as an important risk factor. This study aimed to explore blood alcohol concentrations (BAC g/dL) among pedestrian fatalities in the United States between 2016 and 2020. Exploring the presence of alcohol among pedestrian cases will support targeted interventions designed to reduce risk. This study utilized pedestrian fatality and alcohol screening data provided by the Fatality Analysis Reporting System (FARS). Logistic models were examined to identify statistical associations (ORs, 95% CI) by age, race, and sex relative to positive BAC exposure (BAC &gt; 0.0 g/dL), mild exposure (BAC &gt; 0.0 &lt; .079 g/dL), moderate to severe alcohol exposure (BAC 0.08–.299 g/dL), and severe exposure (BAC ≥ 0.30 g/dL). Between 2016 and 2020, 33,375 pedestrian fatalities were reported to FARS with 75.1% of cases retained for analysis (<i>n</i> = 25,077). Fatalities were more likely to be White (69.3%), male (69.9%), and between 25-64 years of age (67.3%). 74.0% of fatalities were tested for alcohol, with 40.9% screening positive. Females, cases ≥ 75 years of age, and those identified as Asians reported the lowest odds of being positive for alcohol exposure. Results suggest an ongoing threat to pedestrians due to alcohol consumption and that exposure odds vary by demographic characteristics. Unfortunately, analytical approaches to understanding the roles played by drugs and alcohol among vulnerable road users tend to be marginalized in the literature. Analytical, evidence-based investigations are needed to curtail the risk of pedestrian fatalities in the U.S.