cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8045771
title: Additional file 3: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Biological functions. A Microsoft excel file containing two worksheets listing the top five molecular and cellular function (“Mol and Cell Func”) and physiological system development and function (“Physiol Sys Dev and Func”) categories as determined by Ingenuity Pathway Analysis. Each sheet lists the category, functional annotation, P-values for overrepresentation, and a gene list for each functional annotation. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8045780
title: Additional file 4: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Primer sequences. A Microsoft excel file containing a single worksheet (â RT-qPCR primersâ ) listing the primers used for RT-qPCR analysis. The gene symbol, full gene name, Ensembl chicken genome assembly Galgal4 transcript ID, forward and reverse primer sequences, and amplicon size are provided for each primer pair. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8045780.v1
title: Additional file 4: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Primer sequences. A Microsoft excel file containing a single worksheet (â RT-qPCR primersâ ) listing the primers used for RT-qPCR analysis. The gene symbol, full gene name, Ensembl chicken genome assembly Galgal4 transcript ID, forward and reverse primer sequences, and amplicon size are provided for each primer pair. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8045765
title: Additional file 2: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Differentially expressed genes (DEGs) and self-organizing maps (SOMs) clusters. A Microsoft excel file containing a single worksheet (“Differentially Expressed Genes”) listing all DEGs that had at least 16 observations, a statistically significant (P ≤ 0.05) line-by-age interaction or main effect of line, and at least a 1.6-fold difference between the lines. For each gene, the SOMs cluster, platform ID, clone ID, clone GenBank accession number, clone name, gene symbol, human protein ID, P-values for the line-by-age interaction or main effect of line, and log2ratio for each age are provided. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.8045771.v1
title: Additional file 3: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Biological functions. A Microsoft excel file containing two worksheets listing the top five molecular and cellular function (“Mol and Cell Func”) and physiological system development and function (“Physiol Sys Dev and Func”) categories as determined by Ingenuity Pathway Analysis. Each sheet lists the category, functional annotation, P-values for overrepresentation, and a gene list for each functional annotation. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8045765.v1
title: Additional file 2: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Differentially expressed genes (DEGs) and self-organizing maps (SOMs) clusters. A Microsoft excel file containing a single worksheet (“Differentially Expressed Genes”) listing all DEGs that had at least 16 observations, a statistically significant (P ≤ 0.05) line-by-age interaction or main effect of line, and at least a 1.6-fold difference between the lines. For each gene, the SOMs cluster, platform ID, clone ID, clone GenBank accession number, clone name, gene symbol, human protein ID, P-values for the line-by-age interaction or main effect of line, and log2ratio for each age are provided. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.8045756
title: Additional file 1: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Significant gene lists. A Microsoft excel file containing three worksheets listing all genes that had a statistically significant (P ≤ 0.05) line-by-age interaction (“Line-by-Age Interaction”), main effect of line (“Main Effect of Line”), or main effect of age (“Main Effect of Age”). Each list contains the clone ID, the clone GenBank accession number, the clone BlastX and BlastN hits, P-value, Log2-fold difference between high growth and low growth lines, and the mean value for each line at each age. Genes highlighted in blue on each sheet have a greater than 1.6-fold difference in expression between the highest value in one line and the lowest value in the other. (XLSX 675 kb)
DOI: 10.6084/m9.figshare.8045756.v1
title: Additional file 1: of Transcriptional profiling and pathway analysis reveal differences in pituitary gland function, morphology, and vascularization in chickens genetically selected for high or low body weight

description: Significant gene lists. A Microsoft excel file containing three worksheets listing all genes that had a statistically significant (P ≤ 0.05) line-by-age interaction (“Line-by-Age Interaction”), main effect of line (“Main Effect of Line”), or main effect of age (“Main Effect of Age”). Each list contains the clone ID, the clone GenBank accession number, the clone BlastX and BlastN hits, P-value, Log2-fold difference between high growth and low growth lines, and the mean value for each line at each age. Genes highlighted in blue on each sheet have a greater than 1.6-fold difference in expression between the highest value in one line and the lowest value in the other. (XLSX 675 kb)
DOI: 10.6084/m9.figshare.8045609
title: Additional file 2: of Postseismic fluid discharge chemically recorded in altered pseudotachylyte discovered from an ancient megasplay fault: an example from the Nobeoka Thrust in the Shimanto accretionary complex, SW Japan

description: Sample list, data of depth, and chemical composition of PSZ and footwall minor fault. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8045618
title: Additional file 3: of Postseismic fluid discharge chemically recorded in altered pseudotachylyte discovered from an ancient megasplay fault: an example from the Nobeoka Thrust in the Shimanto accretionary complex, SW Japan

description: Data of depth, and chemical composition of PSZ and footwall minor fault. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.8045618.v1
title: Additional file 3: of Postseismic fluid discharge chemically recorded in altered pseudotachylyte discovered from an ancient megasplay fault: an example from the Nobeoka Thrust in the Shimanto accretionary complex, SW Japan

description: Data of depth, and chemical composition of PSZ and footwall minor fault. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.8045609.v1
title: Additional file 2: of Postseismic fluid discharge chemically recorded in altered pseudotachylyte discovered from an ancient megasplay fault: an example from the Nobeoka Thrust in the Shimanto accretionary complex, SW Japan

description: Sample list, data of depth, and chemical composition of PSZ and footwall minor fault. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.8045582
title: Additional file 1: of The determinants and impact of diagnostic delay in lymphoma in a TB and HIV endemic setting

description: Supplementary data (full dataset with identifiers removed). (XLSX 56 kb)
DOI: 10.6084/m9.figshare.8045582.v1
title: Additional file 1: of The determinants and impact of diagnostic delay in lymphoma in a TB and HIV endemic setting

description: Supplementary data (full dataset with identifiers removed). (XLSX 56 kb)
DOI: 10.6084/m9.figshare.8045561
title: Additional file 4: of Using the distance between sets of hierarchical taxonomic clinical concepts to measure patient similarity

description: Prediction results. The raw data of prediction results. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.8045549
title: Additional file 3: of Using the distance between sets of hierarchical taxonomic clinical concepts to measure patient similarity

description: Similarity Score of Each Patient and Prototypes. Details of similarity score between each patient and each prototype with various set size computed by using different combinations of IC, CS and SS. (XLSX 5114 kb)
DOI: 10.6084/m9.figshare.8045561.v1
title: Additional file 4: of Using the distance between sets of hierarchical taxonomic clinical concepts to measure patient similarity

description: Prediction results. The raw data of prediction results. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.8045540
title: Additional file 2: of Using the distance between sets of hierarchical taxonomic clinical concepts to measure patient similarity

description: Subpopulation prototype. The prototype score of each ICD code within each subpopulation, a full list of 95 unique 4-character ICD codes, the adjacency matrix and coordinates of each code. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.8045549.v1
title: Additional file 3: of Using the distance between sets of hierarchical taxonomic clinical concepts to measure patient similarity

description: Similarity Score of Each Patient and Prototypes. Details of similarity score between each patient and each prototype with various set size computed by using different combinations of IC, CS and SS. (XLSX 5114 kb)
DOI: 10.6084/m9.figshare.8045540.v1
title: Additional file 2: of Using the distance between sets of hierarchical taxonomic clinical concepts to measure patient similarity

description: Subpopulation prototype. The prototype score of each ICD code within each subpopulation, a full list of 95 unique 4-character ICD codes, the adjacency matrix and coordinates of each code. (XLSX 75 kb)
DOI: 10.6084/m9.figshare.12800642
title: Metadata record for: A relational database to identify differentially expressed genes in the endometrium and endometriosis lesions

description: This dataset contains key characteristics about the data described in the Data Descriptor A relational database to identify differentially expressed genes in the endometrium and endometriosis lesions. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.8045492
title: MOESM1 of No evidence for spatial variation in predation risk following restricted-area fox culling

description: Additional file 1. Dataset for the analysis performed in this article.
DOI: 10.6084/m9.figshare.8045492.v1
title: MOESM1 of No evidence for spatial variation in predation risk following restricted-area fox culling

description: Additional file 1. Dataset for the analysis performed in this article.
DOI: 10.6084/m9.figshare.8045462
title: Additional file 3: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

description: Table S2. Enrichment test results of positively selected loci in different populations using GREAT. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.8045462.v1
title: Additional file 3: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

description: Table S2. Enrichment test results of positively selected loci in different populations using GREAT. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.8045447
title: Additional file 1: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

description: Table S1. Sample information in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8045441
title: Additional file 3: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: Enriched pathways (FDR
DOI: 10.6084/m9.figshare.8045444
title: Additional file 4: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: Results from the transcription factor analyses. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8045444.v1
title: Additional file 4: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: Results from the transcription factor analyses. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8045447.v1
title: Additional file 1: of African evolutionary history inferred from whole genome sequence data of 44 indigenous African populations

description: Table S1. Sample information in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8045432
title: Additional file 1: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: List of genes with a significantly (pâ â ¤â 0.05) different baseline expression in responders compared to non-responders adjusted for age and gender. (XLSX 671 kb)
DOI: 10.6084/m9.figshare.8045435
title: Additional file 2: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: List of significantly (pâ â ¤â 0.05) differentially altered gene transcripts in responders compared to non-responders adjusted for age and gender. (XLSX 622 kb)
DOI: 10.6084/m9.figshare.8045441.v1
title: Additional file 3: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: Enriched pathways (FDR
DOI: 10.6084/m9.figshare.8045432.v1
title: Additional file 1: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: List of genes with a significantly (pâ â ¤â 0.05) different baseline expression in responders compared to non-responders adjusted for age and gender. (XLSX 671 kb)
DOI: 10.6084/m9.figshare.8045435.v1
title: Additional file 2: of Differences in peripheral blood mononuclear cell gene expression and triglyceride composition in lipoprotein subclasses in plasma triglyceride responders and non-responders to omega-3 supplementation

description: List of significantly (pâ â ¤â 0.05) differentially altered gene transcripts in responders compared to non-responders adjusted for age and gender. (XLSX 622 kb)
DOI: 10.6084/m9.figshare.8045417
title: Additional file 4: of Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization

description: Table S4. The |log2FC| of WOX genes in four tissues. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8045417.v1
title: Additional file 4: of Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization

description: Table S4. The |log2FC| of WOX genes in four tissues. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8045408
title: Additional file 3: of Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization

description: Table S3. The FPKM values of all WOX genes of B. napus and its diploid progenitors (B. rapa and B. oleracea) in four tissues. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.8045408.v1
title: Additional file 3: of Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization

description: Table S3. The FPKM values of all WOX genes of B. napus and its diploid progenitors (B. rapa and B. oleracea) in four tissues. (XLSX 21 kb)
DOI: 10.5281/zenodo.3999150
title: Optical topography of rough surfaces using vortex localization of fluorescent markers_experimental dataset

description: This file contains the raw unprocessed experimental data for the results published in Petr Schovánek et al., Optical topography of rough surfaces using vortex localization of fluorescent markers, Optics Letters Vol. 45, Issue 16, pp. 4468-4471 (2020).
description: Funding: Grantová Agentura Ceské Republiky (GA18- 01396S); Central European Institute of Technology (LQ1601); H2020 Spreading Excellence and Widening Participation (No. 810626); Univerzita Palackého v Olomouci (IGA PrF 2020 004); Czechoslovak Microscopy Society
DOI: 10.5281/zenodo.3999149
title: Optical topography of rough surfaces using vortex localization of fluorescent markers_experimental dataset

description: This file contains the raw unprocessed experimental data for the results published in Petr Schovánek et al., Optical topography of rough surfaces using vortex localization of fluorescent markers, Optics Letters Vol. 45, Issue 16, pp. 4468-4471 (2020).
description: Funding: Grantová Agentura Ceské Republiky (GA18- 01396S); Central European Institute of Technology (LQ1601); H2020 Spreading Excellence and Widening Participation (No. 810626); Univerzita Palackého v Olomouci (IGA PrF 2020 004); Czechoslovak Microscopy Society
DOI: 10.6084/m9.figshare.8045342
title: Additional file 6: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Figure S1. Coefficients of determination of PbNAC73a and PbNAC73b .Figure S2. Segmental duplication between members of PbNAC73a and PbNAC73b. (ZIP 25 kb)
DOI: 10.6084/m9.figshare.8045342.v1
title: Additional file 6: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Figure S1. Coefficients of determination of PbNAC73a and PbNAC73b .Figure S2. Segmental duplication between members of PbNAC73a and PbNAC73b. (ZIP 25 kb)
DOI: 10.6084/m9.figshare.8045303
title: Additional file 1: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Table S1 Basic information of NAC genes in five Rosaceae species. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.8045294
title: Additional file 11: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Table S9 Up-regulated genes in response to cold treatment. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8045303.v1
title: Additional file 1: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Table S1 Basic information of NAC genes in five Rosaceae species. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.8045288
title: Additional file 10: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Table S8 Up-regulated genes in response to drought treatment. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8045294.v1
title: Additional file 11: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Table S9 Up-regulated genes in response to cold treatment. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8045288.v1
title: Additional file 10: of Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)

description: Table S8 Up-regulated genes in response to drought treatment. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8045258
title: MOESM6 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 6: Table S5. Gene ontology terms predicted to be significantly enriched in gene sets up and downregulated in C. elegans treated with fraction 5 (F5).
DOI: 10.6084/m9.figshare.8045258.v1
title: MOESM6 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 6: Table S5. Gene ontology terms predicted to be significantly enriched in gene sets up and downregulated in C. elegans treated with fraction 5 (F5).
DOI: 10.6084/m9.figshare.8045249
title: MOESM5 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 5: Table S4. KEGG pathway terms predicted to be significantly enriched in gene sets up and downregulated in C. elegans treated with fraction 5 (F5).
DOI: 10.6084/m9.figshare.8045249.v1
title: MOESM5 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 5: Table S4. KEGG pathway terms predicted to be significantly enriched in gene sets up and downregulated in C. elegans treated with fraction 5 (F5).
DOI: 10.6084/m9.figshare.8045240
title: MOESM4 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 4: Table S3. KEGG BRITE terms predicted to be significantly enriched in gene sets up and downregulated in C. elegans treated with fraction 5 (F5).
DOI: 10.6084/m9.figshare.8045228
title: MOESM3 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 3: Table S2. List of differentially transcribed genes using only n = 2 and removing outliers (F5.2 and M9.3), including expected counts for biological replicates and using a cutoff of FDR 0.05 and a 2-fold change in transcription.
DOI: 10.6084/m9.figshare.8045240.v1
title: MOESM4 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 4: Table S3. KEGG BRITE terms predicted to be significantly enriched in gene sets up and downregulated in C. elegans treated with fraction 5 (F5).
DOI: 10.6084/m9.figshare.8045228.v1
title: MOESM3 of Transcriptional alterations in Caenorhabditis elegans following exposure to an anthelmintic fraction of the plant Picria fel-terrae Lour.

description: Additional file 3: Table S2. List of differentially transcribed genes using only n = 2 and removing outliers (F5.2 and M9.3), including expected counts for biological replicates and using a cutoff of FDR 0.05 and a 2-fold change in transcription.
DOI: 10.6084/m9.figshare.8045153
title: MOESM1 of Breed susceptibility for common surgically treated orthopaedic diseases in 12 dog breeds

description: Additional file 1. Control population calculations and raw registration numbers.
DOI: 10.6084/m9.figshare.8045153.v1
title: MOESM1 of Breed susceptibility for common surgically treated orthopaedic diseases in 12 dog breeds

description: Additional file 1. Control population calculations and raw registration numbers.