cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16864963.v1
title: Additional file 6 of Deep learning for cancer type classification and driver gene identification

description: Additional file 6. Table S6. Top genes of the 1970 pathogenetic cancer transcripts
DOI: 10.25549/usctheses-ouc1401028
title: Microsoft Word - Xiuqing Li thesis Part I 07072011.docx
DOI: 10.6084/m9.figshare.16864957
title: Additional file 4 of Deep learning for cancer type classification and driver gene identification

description: Additional file 4. Table S4. Top genes in the 985 pathogenetic cancer transcripts
DOI: 10.25549/usctheses-ouc1416084
title: ThesisFinalReformatted
DOI: 10.6084/m9.figshare.16864966.v1
title: Additional file 7 of Deep learning for cancer type classification and driver gene identification

description: Additional file 7. Table S7. Top genes of the 1970 pathogenetic germline transcripts
DOI: 10.25549/usctheses-ouc1406105
title: Microsoft Word - JO_BEN_WHITTENBURG_FINAL_COPY_FOR_SUBMISSION.doc
DOI: 10.6084/m9.figshare.7427879
title: Brgoch Superhard Materials Training Data

description: 2574 (2494) materials used for training regressors that predict shear and bulk modulus. The xlsx file provided consists of the original data used to train models described in reference 1 below. The json.gz file includes structural and composition based data from the Materials Project as well as mpid values. Several entries have been marked suspect in this file as they could not be properly cross referenced on the Materials Project database. An additional goup of materials have been marked suspect due to large discrepancies in shear and bulk modulus from the source file and current MP values.<br>Data is available as 
Monty Encoder encoded JSON and as a XLSX file. Recommended access method is with
 the matminer Python package using the datasets module.<br>Note on citations: If you found this dataset useful and would like to 
cite it in your work, please be sure to cite its original sources below 
rather than or in addition to this page.<br>Dataset discussed in:<br>Machine Learning Directed Search for Ultraincompressible, Superhard Materials
 Aria Mansouri Tehrani, Anton O. Oliynyk, Marcus Parry, Zeshan Rizvi, Samantha Couper, Feng Lin, Lowell Miyagi, Taylor D. Sparks, and Jakoah Brgoch
 Journal of the American Chemical Society
 
 <strong>2018</strong>
 <em>140</em>
 (31),
 9844-9853
 
 
 
 DOI: 10.1021/jacs.8b02717
 
 <br>
DOI: 10.25549/usctheses-ouc1413762
title: Microsoft Word - $ASQ102640_supp_undefined_AC4743C2-EA07-11E0-BA63-ED45D352ABB1.doc
DOI: 10.25549/usctheses-ouc1415177
title: Microsoft Word - GarrettR5610477999.doc
DOI: 10.6084/m9.figshare.16865014
title: Additional file 1 of Integrated plasma proteomics and lung transcriptomics reveal novel biomarkers in idiopathic pulmonary fibrosis

description: Additional file 1. Differential protein expression in plasma of IPF patients compared to healthy controls.
DOI: 10.25549/usctheses-ouc1401482
title: A note about Asian language terms and names
DOI: 10.6084/m9.figshare.22626155.v1
title: Additional file 3 of Analysis of the AMT gene family in chili pepper and the effects of arbuscular mycorrhizal colonization on the expression patterns of CaAMT2 genes

description: Additional file 3: Table S1. Detailed information about the CaAMT genes.
DOI: 10.6084/m9.figshare.16865014.v1
title: Additional file 1 of Integrated plasma proteomics and lung transcriptomics reveal novel biomarkers in idiopathic pulmonary fibrosis

description: Additional file 1. Differential protein expression in plasma of IPF patients compared to healthy controls.
DOI: 10.25549/usctheses-ouc1416126
title: Microsoft Word - CatherineCloutierMastersThesis.doc
DOI: 10.6084/m9.figshare.16865000.v1
title: Additional file 5 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 5: Table S5. The clinical characteristics of 25 SCCHN patients.
DOI: 10.6084/m9.figshare.16865003
title: Additional file 6 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 6: Table S6. The data of MKRN3 expression and overall survival.
DOI: 10.6084/m9.figshare.16865000
title: Additional file 5 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 5: Table S5. The clinical characteristics of 25 SCCHN patients.
DOI: 10.6084/m9.figshare.16864988.v1
title: Additional file 1 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 1: Table S1. The sequence of primers.
DOI: 10.6084/m9.figshare.16864991
title: Additional file 2 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 2: Table S2. The antibody information.
DOI: 10.6084/m9.figshare.16865003.v1
title: Additional file 6 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 6: Table S6. The data of MKRN3 expression and overall survival.
DOI: 10.6084/m9.figshare.16864988
title: Additional file 1 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 1: Table S1. The sequence of primers.
DOI: 10.6084/m9.figshare.16864997
title: Additional file 4 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 4: Table S4. The KEGG pathways.
DOI: 10.6084/m9.figshare.16864997.v1
title: Additional file 4 of Elevated expression of MKRN3 in squamous cell carcinoma of the head and neck and its clinical significance

description: Additional file 4: Table S4. The KEGG pathways.
DOI: 10.6084/m9.figshare.13129037.v4
title: Arctic COSMO-CLM hindcast 1992

description: COSMO-CLM Russian Arctic climate dataset
DOI: 10.6084/m9.figshare.22640230
title: Six-component seismic records observed at QS01 and NA01

description: We recorded the 2019 Hualien mww6.1 earthquake by two stations on both sides of Taiwan Strait: Qingyuan Shan station (QS01) in Fujian and Nanao station (NA01) station in Taiwan. Both stations consist of a broad-band seismometer and a fiber-optic rotational seismometer. Here are 6C seismic records observed by the two stations.All files are in SAC format.<br>The meaning of the fields in the file name are as follows :HLE ----- 2019 Hualien mww6.1 earthquakeQS01/NA01 ----- Qingyuan Shan station and Nanao stationAcc ----- Translational accelerationsRot ----- Rotational ratesE/N/Z ----- The axes directions that translational motions are along or rotational motions are around<br>unit: nm/s/s for translational accelerationsnras/s for rotational rates
DOI: 10.6084/m9.figshare.17913900
title: B-Raf inhibitor vemurafenib counteracts sulfur mustard-induced epidermal impairment through MAPK/ERK signaling

description: The chemical warfare agent sulfur mustard (SM) causes severe cutaneous lesions characterized by epidermal cell death, apoptosis, and inflammation. At present, the molecular mechanisms underlying SM-induced injury are not well understood, and there is no standard treatment protocol for SM-exposed patients. Here, we conducted a high-content screening of the Food and Drug Administration (FDA)-approved drug library of 1018 compounds against SM injury on an immortal human keratinocyte HaCaT cell line, focusing on cell survival. We found that the B-Raf inhibitor vemurafenib had an apparent therapeutic effect on HaCaT cells and resisted SM toxicity. Other tested B-Raf inhibitors, both type-I (dabrafenib and encorafenib) and type-II (RAF265 and AZ628), also exhibited potent therapeutic effects on SM-exposed HaCaT cells. Both SM and vemurafenib triggered extracellular signal-related kinase (ERK) activation. The therapeutic effect of vemurafenib in HaCaT cells during SM injury was ERK-dependent, indicating a specific role of ERK in keratinocyte regulatory mechanisms. Furthermore, vemurafenib partially improved cutaneous damage in a mouse ear vesicant model. Collectively, our results provide evidence that the B-Raf inhibitor vemurafenib is a potential therapeutic agent against SM injury, and oncogenic B-Raf might be an exciting new therapeutic target following exposure to mustard vesicating agents.
DOI: 10.6084/m9.figshare.13719582
title: Additional file 3 of Chloroplast genome variation and phylogenetic relationships of Atractylodes species

description: Additional file 3. Table S2. Information on the chloroplast genome downloaded from Genbank for phylogenetic analysis.
DOI: 10.6084/m9.figshare.13719582.v1
title: Additional file 3 of Chloroplast genome variation and phylogenetic relationships of Atractylodes species

description: Additional file 3. Table S2. Information on the chloroplast genome downloaded from Genbank for phylogenetic analysis.
DOI: 10.6084/m9.figshare.13719579.v1
title: Additional file 2 of Chloroplast genome variation and phylogenetic relationships of Atractylodes species

description: Additional file 2. Table S1. Detailed information of indels.
DOI: 10.6084/m9.figshare.22626149
title: Additional file 1 of Analysis of the AMT gene family in chili pepper and the effects of arbuscular mycorrhizal colonization on the expression patterns of CaAMT2 genes

description: Additional file 1: Table S2. Proteins sequence similarity matrix between members of CaAMT genes.
DOI: 10.6084/m9.figshare.12671164.v1
title: Additional file 2 of Time‑resolved transcriptome analysis during transitions of sulfur nutritional status provides insight into triacylglycerol (TAG) and astaxanthin accumulation in the green alga Chromochloris zofingiensis

description: Additional file 2. KEGG pathway enrichment and GO term enrichment.
DOI: 10.6084/m9.figshare.13719579
title: Additional file 2 of Chloroplast genome variation and phylogenetic relationships of Atractylodes species

description: Additional file 2. Table S1. Detailed information of indels.
DOI: 10.6084/m9.figshare.23688972
title: SI.docx

description: Supplementary Materials
DOI: 10.6084/m9.figshare.23688972.v1
title: SI.docx

description: Supplementary Materials
DOI: 10.6084/m9.figshare.17913900.v1
title: B-Raf inhibitor vemurafenib counteracts sulfur mustard-induced epidermal impairment through MAPK/ERK signaling

description: The chemical warfare agent sulfur mustard (SM) causes severe cutaneous lesions characterized by epidermal cell death, apoptosis, and inflammation. At present, the molecular mechanisms underlying SM-induced injury are not well understood, and there is no standard treatment protocol for SM-exposed patients. Here, we conducted a high-content screening of the Food and Drug Administration (FDA)-approved drug library of 1018 compounds against SM injury on an immortal human keratinocyte HaCaT cell line, focusing on cell survival. We found that the B-Raf inhibitor vemurafenib had an apparent therapeutic effect on HaCaT cells and resisted SM toxicity. Other tested B-Raf inhibitors, both type-I (dabrafenib and encorafenib) and type-II (RAF265 and AZ628), also exhibited potent therapeutic effects on SM-exposed HaCaT cells. Both SM and vemurafenib triggered extracellular signal-related kinase (ERK) activation. The therapeutic effect of vemurafenib in HaCaT cells during SM injury was ERK-dependent, indicating a specific role of ERK in keratinocyte regulatory mechanisms. Furthermore, vemurafenib partially improved cutaneous damage in a mouse ear vesicant model. Collectively, our results provide evidence that the B-Raf inhibitor vemurafenib is a potential therapeutic agent against SM injury, and oncogenic B-Raf might be an exciting new therapeutic target following exposure to mustard vesicating agents.
DOI: 10.6084/m9.figshare.12671164
title: Additional file 2 of Time‑resolved transcriptome analysis during transitions of sulfur nutritional status provides insight into triacylglycerol (TAG) and astaxanthin accumulation in the green alga Chromochloris zofingiensis

description: Additional file 2. KEGG pathway enrichment and GO term enrichment.
DOI: 10.6084/m9.figshare.12671167
title: Additional file 3 of Time‑resolved transcriptome analysis during transitions of sulfur nutritional status provides insight into triacylglycerol (TAG) and astaxanthin accumulation in the green alga Chromochloris zofingiensis

description: Additional file 3. The top 100 genes having highest differential expression in SS 6 h group.
DOI: 10.6084/m9.figshare.12671167.v1
title: Additional file 3 of Time‑resolved transcriptome analysis during transitions of sulfur nutritional status provides insight into triacylglycerol (TAG) and astaxanthin accumulation in the green alga Chromochloris zofingiensis

description: Additional file 3. The top 100 genes having highest differential expression in SS 6 h group.
DOI: 10.6084/m9.figshare.12671161
title: Additional file 1 of Time‑resolved transcriptome analysis during transitions of sulfur nutritional status provides insight into triacylglycerol (TAG) and astaxanthin accumulation in the green alga Chromochloris zofingiensis

description: Additional file 1. Gene expression level in transcriptome of C. zofingiensis.
DOI: 10.6084/m9.figshare.12671161.v1
title: Additional file 1 of Time‑resolved transcriptome analysis during transitions of sulfur nutritional status provides insight into triacylglycerol (TAG) and astaxanthin accumulation in the green alga Chromochloris zofingiensis

description: Additional file 1. Gene expression level in transcriptome of C. zofingiensis.
DOI: 10.6084/m9.figshare.17914066.v1
title: Data for Case Study-2 from Distributed renewable energy systems for resilient and sustainable development of remote and vulnerable communities

description: More than 940 million people (13% of the world population) do not have any access to electricity. Most of these people live in rural and remote areas, where the lack of electricity access is significantly damaging the quality of life, economic development and the environment. Distributed energy systems (DES) (based on clean energy technologies) for energy access offer a potentially important strategy for pursuing environment-friendly sustainable development and poverty alleviation; especially in rural and remote communities. DES are also helpful in reducing deforestation and greenhouse gas (GHG) emissions as the fossil fuel-based energy production is among the largest contributors to GHG emissions. This paper presents the importance of energy access through DES for resilient and sustainable development using two projects case studies from Pakistan. The first project case study is based on the Afghan refugee villages, where currently, there is no electricity access. A baseline survey was conducted to assess the socio-economic conditions and energy demand of the refugees. This assessment is then used to devise clean energy solutions as per the local context. This project aims to improve the quality of life of the refugees by providing energy access. In the second case study, electricity access was provided to the local communities a few years ago. Analyses of primary data collected in this case study show that DES integrated with socio-economic and cultural systems can bring a significantly positive impact on the local communities, advancing all the sustainability development goals. This work concludes that DES can be significantly generative, if effectively integrated into socio-economic processes.This article is part of the theme issue ‘Developing resilient energy systems’.
DOI: 10.6084/m9.figshare.4806769
title: The immunogenicity and safety of a Hib-MenAC vaccine: a non-inferiority randomized, observer-blind trial in infants aged 3-5 months

description: <b>Background</b>: The objective of this study was to evaluate the immunogenicity and safety of the novel combined Haemophilus influenzae type b–Neisseria meningitidis serogroup A and C–tetanus toxoid conjugate vaccine (Hib-MenAC). <b>M</b><b>ethods</b>: We conducted a non-inferiority, randomized, observer-blind, positive control clinical trial in 900 healthy infants aged between 3–5 months in Funing County, Jiangsu Province, China. Participants were randomly allocated, in a ratio of 2:1 (block = 6), to receive experimental combined Hib-MenAC vaccines co-administrated with placebo or the co-administration of licensed Hib vaccine and MenAC vaccine, according to a three-dose immunization schedule. The seroconversion of antibody titer against meningococcal serogroups A, C and Hib was the primary endpoint. <b>Results</b>: The experimental vaccines was non-inferior to the licensed two control vaccines. Participants receiving experimental Hib-MenAC vaccines showed a seroconversion rate of 99.0%, 96.1% and 97.7% for rSBA-MenA, rSBA-MenC and anti-PRP antibodies, respectively. The Hib-MenAC vaccine did not result in an increase in adverse reaction, and no serious adverse event was judged to be related to the vaccination. <b>Conclusions</b>: The novel combined Hib-MenAC conjugate vaccine was safe and highly immunogenic in infants aged between 3 to 5 months.
DOI: 10.6084/m9.figshare.4806769.v1
title: The immunogenicity and safety of a Hib-MenAC vaccine: a non-inferiority randomized, observer-blind trial in infants aged 3-5 months

description: <b>Background</b>: The objective of this study was to evaluate the immunogenicity and safety of the novel combined Haemophilus influenzae type b–Neisseria meningitidis serogroup A and C–tetanus toxoid conjugate vaccine (Hib-MenAC). <b>M</b><b>ethods</b>: We conducted a non-inferiority, randomized, observer-blind, positive control clinical trial in 900 healthy infants aged between 3–5 months in Funing County, Jiangsu Province, China. Participants were randomly allocated, in a ratio of 2:1 (block = 6), to receive experimental combined Hib-MenAC vaccines co-administrated with placebo or the co-administration of licensed Hib vaccine and MenAC vaccine, according to a three-dose immunization schedule. The seroconversion of antibody titer against meningococcal serogroups A, C and Hib was the primary endpoint. <b>Results</b>: The experimental vaccines was non-inferior to the licensed two control vaccines. Participants receiving experimental Hib-MenAC vaccines showed a seroconversion rate of 99.0%, 96.1% and 97.7% for rSBA-MenA, rSBA-MenC and anti-PRP antibodies, respectively. The Hib-MenAC vaccine did not result in an increase in adverse reaction, and no serious adverse event was judged to be related to the vaccination. <b>Conclusions</b>: The novel combined Hib-MenAC conjugate vaccine was safe and highly immunogenic in infants aged between 3 to 5 months.
DOI: 10.6084/m9.figshare.20011174
title: Intestinal microflora provides biomarkers for infertile women with endometrial polyps

description: Endometrial polyps (EPs) are related to infertility; however, there are no biomarkers for identification. We evaluated changes in the intestinal microflora to identify microflora-based biomarkers that may be useful for detecting EPs. Intestinal specimens were prospectively collected from 100 women: 25 infertile women with EPs (InfEP + group), 25 infertile women without EPs (InfEP- group), and 50 healthy women (Fertile group). The microbiota composition was analyzed using 16S ribosomal RNA gene amplification and the intestinal expression of selected human genes using quantitative reverse transcription polymerase chain reaction. The InfEP + group had higher proportions of <i>Prevotella</i>, <i>Streptococcus</i>, <i>Fusobacterium</i>, <i>Fenollaria</i>, and <i>Porphyromonas</i> than the InfEP- and Fertile groups, while the Fertile group had higher proportions of <i>Faecalibacterium</i>, <i>Bacteroides</i>, and <i>Blautia</i>. We constructed a microbial dysbiosis index based on the intestinal microbiota at the genus level as a predictive model. The most accurate model to predict the presence of EPs was that including the Fertile and InfEP + groups (area under the curve: 0.89, 95% confidence interval: 0.79–0.96). The InfEP- and Fertile groups had significant differences in microflora composition compared with the InfEP + group. The intestinal microflora may be a useful biomarker for identifying EPs in infertile women.
DOI: 10.6084/m9.figshare.20011174.v1
title: Intestinal microflora provides biomarkers for infertile women with endometrial polyps

description: Endometrial polyps (EPs) are related to infertility; however, there are no biomarkers for identification. We evaluated changes in the intestinal microflora to identify microflora-based biomarkers that may be useful for detecting EPs. Intestinal specimens were prospectively collected from 100 women: 25 infertile women with EPs (InfEP + group), 25 infertile women without EPs (InfEP- group), and 50 healthy women (Fertile group). The microbiota composition was analyzed using 16S ribosomal RNA gene amplification and the intestinal expression of selected human genes using quantitative reverse transcription polymerase chain reaction. The InfEP + group had higher proportions of <i>Prevotella</i>, <i>Streptococcus</i>, <i>Fusobacterium</i>, <i>Fenollaria</i>, and <i>Porphyromonas</i> than the InfEP- and Fertile groups, while the Fertile group had higher proportions of <i>Faecalibacterium</i>, <i>Bacteroides</i>, and <i>Blautia</i>. We constructed a microbial dysbiosis index based on the intestinal microbiota at the genus level as a predictive model. The most accurate model to predict the presence of EPs was that including the Fertile and InfEP + groups (area under the curve: 0.89, 95% confidence interval: 0.79–0.96). The InfEP- and Fertile groups had significant differences in microflora composition compared with the InfEP + group. The intestinal microflora may be a useful biomarker for identifying EPs in infertile women.
DOI: 10.6084/m9.figshare.22626152
title: Additional file 2 of Analysis of the AMT gene family in chili pepper and the effects of arbuscular mycorrhizal colonization on the expression patterns of CaAMT2 genes

description: Additional file 2: Table S3. List of primers used in this study.
DOI: 10.6084/m9.figshare.22626155
title: Additional file 3 of Analysis of the AMT gene family in chili pepper and the effects of arbuscular mycorrhizal colonization on the expression patterns of CaAMT2 genes

description: Additional file 3: Table S1. Detailed information about the CaAMT genes.
DOI: 10.6084/m9.figshare.20004761
title: Additional file 1 of The histone deacetylase HOS2 controls pathogenicity through regulation of melanin biosynthesis and appressorium formation in Colletotrichum gloeosporioides

description: Additional file 1: Table S1. Nucleotide and deduced amino acid sequences of CgHOS2. Table S2. RNA-seq results. Table S3. Primers used in this study.