cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/124148
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1605B using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124149
title: Radiometer data collected during research cruise OC1605B using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124150
title: Radiometer data collected during research cruise OC1605B using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380707
title: Additional file 1: of Mismatch between femur and tibia coronal alignment in the knee joint: classification of five lower limb types according to femoral and tibial mechanical alignment

description: Raw data. (XLSX 22 kb)
DOI: 10.7284/124155
title: Rain Gauge data collected during research cruise OC1605B using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380707.v1
title: Additional file 1: of Mismatch between femur and tibia coronal alignment in the knee joint: classification of five lower limb types according to femoral and tibial mechanical alignment

description: Raw data. (XLSX 22 kb)
DOI: 10.7284/124151
title: Water Temperature data collected during research cruise OC1605B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124152
title: Transmissometer data collected during research cruise OC1605B using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380692
title: A qualitative metasynthesis of the meaning of speech-generating devices for people with complex communication needs

description: The aim of this metasynthesis review of published qualitative research was to investigate the lived experience and meaning ascribed to speech-generating devices (SGDs) by people with complex communication needs and their familiar communication partners. Bibliographic databases were searched up to June 2016, and selected articles were assessed for their relevance to the research aim. The metasynthesis included 21 original articles and resulted in the identification of six main themes, each of which was comprised of two or more sub-themes that related to the experience of using SGD: It’s an Inefficient Voice, It’s Not a Natural Voice, Making the Most of This Voice, It’s My Voice, It’s More Than a Voice, and Having a Voice: Being Heard. The findings depict how use of an SGD is a complex process of understanding the limitations of the device, acknowledging expectations of society, using strategies to optimize communication, being aware of what an SGD represents, and using the SGD to enable social participation and a sense of empowerment.
DOI: 10.6084/m9.figshare.7380680
title: A new proteid salamander from the early Oligocene of Romania with notes on the paleobiogeography of Eurasian proteids

description: The Proteidae represent a small group of perennibranchiate salamanders with a disjunct distribution in North America and southeastern Europe. Herein, we describe a new species of proteid salamander from the early Oligocene of Romania representing the geologically oldest member reported from the Cenozoic of Eurasia. <i>Mioproteus gardneri</i>, sp. nov., based on features of the vomers, dentaries, atlas, and vertebrae, appears to be closely allied with <i>M. caucasicus</i> and <i>M. wezei</i>, standing altogether as the sister group of <i>Proteus</i>, the only living European proteid. The apomorphies of the European clade, shared with the American members <i>Necturus</i> and <i>Paranecturus</i>, include the presence of dorsoventrally flattened anterior cotyles and alar-like processes, whereas a few other characters appear to be more derived in the European forms, such as the diverging anterior cotyles of the atlas enclosing an angle of 225°, the trunk vertebrae with strongly bifurcated neural spines, and unicipitate transverse processes. Peculiarly, the proteid remains from the early Oligocene locality of Suceag 1, Romania, were accompanied by the palaeobatrachid frog <i>Albionbatrachus</i>, a form closely linked to aquatic environments and having a limited fossil record in the Paleogene (upper Eocene of southern England, lower Oligocene of Romania, and upper Oligocene of Germany), suggesting that these fully aquatic groups probably used similar freshwater corridors to reach more southerly European territories.
DOI: 10.6084/m9.figshare.7380692.v2
title: A qualitative metasynthesis of the meaning of speech-generating devices for people with complex communication needs

description: The aim of this metasynthesis review of published qualitative research was to investigate the lived experience and meaning ascribed to speech-generating devices (SGDs) by people with complex communication needs and their familiar communication partners. Bibliographic databases were searched up to June 2016, and selected articles were assessed for their relevance to the research aim. The metasynthesis included 21 original articles and resulted in the identification of six main themes, each of which was comprised of two or more sub-themes that related to the experience of using SGD: It’s an Inefficient Voice, It’s Not a Natural Voice, Making the Most of This Voice, It’s My Voice, It’s More Than a Voice, and Having a Voice: Being Heard. The findings depict how use of an SGD is a complex process of understanding the limitations of the device, acknowledging expectations of society, using strategies to optimize communication, being aware of what an SGD represents, and using the SGD to enable social participation and a sense of empowerment.
DOI: 10.7284/124153
title: TSG (Thermosalinograph) data collected during research cruise OC1605B using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124126
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1605X using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380680.v1
title: A new proteid salamander from the early Oligocene of Romania with notes on the paleobiogeography of Eurasian proteids

description: The Proteidae represent a small group of perennibranchiate salamanders with a disjunct distribution in North America and southeastern Europe. Herein, we describe a new species of proteid salamander from the early Oligocene of Romania representing the geologically oldest member reported from the Cenozoic of Eurasia. <i>Mioproteus gardneri</i>, sp. nov., based on features of the vomers, dentaries, atlas, and vertebrae, appears to be closely allied with <i>M. caucasicus</i> and <i>M. wezei</i>, standing altogether as the sister group of <i>Proteus</i>, the only living European proteid. The apomorphies of the European clade, shared with the American members <i>Necturus</i> and <i>Paranecturus</i>, include the presence of dorsoventrally flattened anterior cotyles and alar-like processes, whereas a few other characters appear to be more derived in the European forms, such as the diverging anterior cotyles of the atlas enclosing an angle of 225°, the trunk vertebrae with strongly bifurcated neural spines, and unicipitate transverse processes. Peculiarly, the proteid remains from the early Oligocene locality of Suceag 1, Romania, were accompanied by the palaeobatrachid frog <i>Albionbatrachus</i>, a form closely linked to aquatic environments and having a limited fossil record in the Paleogene (upper Eocene of southern England, lower Oligocene of Romania, and upper Oligocene of Germany), suggesting that these fully aquatic groups probably used similar freshwater corridors to reach more southerly European territories.
DOI: 10.7284/124116
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1605X using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380674
title: Tungsten high heat flux testing published data

description: Details of published high heat flux tests on pure tungsten, in a structured manner.<br>
DOI: 10.6084/m9.figshare.7380662
title: Supplementary Material for: The Clinicopathological Significance and Correlative Signaling Pathways of an Autophagy-Related Gene, Ambra1, in Breast Cancer: a Study of 25 Microarray RNA-Seq Datasets and in-House Gene Silencing

description: <b><i>Background/Aims:</i></b> The activating molecule in Beclin1-regulated autophagy (Ambra1) has been observed to be over-expressed in several cancers, but the clinical contribution of Ambra1 in breast cancer (BC) remains unknown. Hence, in this study, we conducted a comprehensive investigation into the expression, biological role, and underlying functional mechanism of Ambra1 in BC. <b><i>Methods:</i></b> Microarray and RNA-seq datasets providing Ambra1 expression data were obtained from Gene Expression Omnibus (GEO), ArrayExpress, Oncomine, and The Cancer Genome Atlas (TCGA). Both standard mean deviation (SMD) and summary receiver operating characteristic methods were employed to assess Ambra1 expression in BC. We then silenced Ambra1 in MDA-MB-231 cells and performed <i>in vitro</i> experiments to explore the biological effects of Ambra1 on BC cells. Furthermore, differentially expressed genes (DEGs) after Ambra1 knock-down were profiled with a microarray and overlapped with the genes correlated with Ambra1 from Multi Experiment Matrix (MEM) and genes similar to Ambra1 from Gene Expression Profiling Interactive Analysis. These overlapping genes were collected for further bioinformatics analyses to investigate the underlying molecular mechanism of Ambra1 in BC. <b><i>Results:</i></b> A total of 25 microarray and RNA-seq datasets involving 2460 breast cancer samples were included. The pooled results demonstrated that Ambra1 was markedly up-regulated in BC tissues (SMD=0.39, 95% CI=0.15–0.63; P=0.002), and the Ambra1 level was also significantly related to the progression of BC, especially metastasis status (P=0.004). <i>In vitro</i> experiments suggested that the proliferation of MDA-MB-231 cells transfected with Ambra1 short hairpin RNA (sh-RNA 2450) showed a decreasing trend at 48 h compared with the control (CK) group. However, apoptosis was similar in cells transfected with Ambra1 sh-RNAs and in the CK cells. Furthermore, we performed a microarray-based comparison of genes after Ambra1 knock-down. The 828 DEGs from microarray analysis were intersected with 4266 Ambra1 co-expressed genes from MEM. Eventually, the overlapped 183 genes were found to be enriched in several well-known cancer-related pathways, including the MAPK signaling pathway, chronic myeloid leukemia pathway, and VEGF signaling pathway. <b><i>Conclusion:</i></b> These results indicate that the level of Ambra1 up-regulation is clearly related to tumorigenesis and progression of BC, probably via influencing several vital pathways. However, this hypothesis needs to be validated with more in-depth experiments in the future.
DOI: 10.6084/m9.figshare.7380674.v1
title: Tungsten high heat flux testing published data

description: Details of published high heat flux tests on pure tungsten, in a structured manner.<br>
DOI: 10.7284/124118
title: Fluorometer data collected during research cruise OC1605X using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124115
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1605X using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380638
title: Datasets Urban Mammals

description: Datasets to conduct the phylogenetic path analyses presented in Santini et al. One strategy doesn’t fit all: determinants of urban adaptation in mammals. Ecology Letters
DOI: 10.7284/124119
title: Gyrocompass data collected during research cruise OC1605X using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380629
title: Perbandingan biaya metode Secant Pile dan Sheet Pile

description: The project needs many resources, so to optimize the resources can use the comparative between 2 construction methods namely secant pile and sheet pile. The objective of this research is to obtain the cheapest construction methods. Otherwise, we need to look at the risk which will appear on each choice.
DOI: 10.7284/124120
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1605X using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380629.v2
title: Perbandingan biaya metode Secant Pile dan Sheet Pile

description: The project needs many resources, so to optimize the resources can use the comparative between 2 construction methods namely secant pile and sheet pile. The objective of this research is to obtain the cheapest construction methods. Otherwise, we need to look at the risk which will appear on each choice.
DOI: 10.7284/124121
title: Radiometer data collected during research cruise OC1605X using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380629.v1
title: Perbandingan biaya metode Secant Pile dan Sheet Pile

description: The project needs many resources, so to optimize the resources can use the comparative between 2 construction methods namely secant pile and sheet pile. The objective of this research is to obtain the cheapest construction methods. Otherwise, we need to look at the risk which will appear on each choice.
DOI: 10.7284/124122
title: Radiometer data collected during research cruise OC1605X using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124127
title: Rain Gauge data collected during research cruise OC1605X using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380539
title: VEP Acuity with Machine Learning

description: Dataset underlyingBach M, Maurer JP, Wolf ME (2008) Visual evoked potential-based acuity assessment in normal vision, artificially degraded vision, and in patients. Brit J Ophthalmol 92:396–403<br>DOI: http://dx.doi.org/10.1136/bjo.2007.130245<br>and R scripts for Machine Learning applied to Acuity VEP. Documenta Ophthalmologica 2019DOI: http://dx.doi.org/10.1007/s10633-019-09701-x<br>
DOI: 10.6084/m9.figshare.7380569
title: Fastq files for the NBIS Tools for Reproducible Research course

description: Backup in case SRA Tools doesn't work.
DOI: 10.7284/124123
title: Water Temperature data collected during research cruise OC1605X using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380539.v2
title: VEP Acuity with Machine Learning

description: Dataset underlyingBach M, Maurer JP, Wolf ME (2008) Visual evoked potential-based acuity assessment in normal vision, artificially degraded vision, and in patients. Brit J Ophthalmol 92:396–403<br>DOI: http://dx.doi.org/10.1136/bjo.2007.130245<br>and R scripts for Machine Learning applied to Acuity VEP. Documenta Ophthalmologica 2019DOI: http://dx.doi.org/10.1007/s10633-019-09701-x<br>
DOI: 10.7284/124124
title: Transmissometer data collected during research cruise OC1605X using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380539.v1
title: VEP Acuity with Machine Learning

description: Dataset underlyingBach M, Maurer JP, Wolf ME (2008) Visual evoked potential-based acuity assessment in normal vision, artificially degraded vision, and in patients. Brit J Ophthalmol 92:396–403<br>DOI: http://dx.doi.org/10.1136/bjo.2007.130245<br>and R scripts for Machine Learning, to be submitted to Documenta Ophthalmologica
DOI: 10.6084/m9.figshare.7380503
title: Unique Inflammatory Changes in Exocrine and Endocrine Pancreas in Enterovirus-induced Fulminant Type 1 Diabetes

description: <b>Context</b><b>: </b>There is scant report on the pathological changes of the exocrine and endocrine pancreas in fulminant type 1 diabetes mellitus (FT1DM). <b>Objective:</b> To clarify the distinct pathological changes in the exocrine as well as the endocrine pancreas shortly after onset of the diabetes in FT1DM.<b></b> <b>Method:</b> The exocrine and endocrine pancreases of 3 FT1DM and 17 non-diabetic controls were immunohistochemically examined for islet and exocrine tissue inflammation, infiltrating mononuclear cell (MNC) CD subtype, enterovirus capsid protein 1 (VP1) localization, and CXC chemokine ligand 10 (CXCL10) and CXC chemokine receptor 3 (CXCR3) expression. <b>Results:</b><b> </b>The median frequency of insulitis, observed in all FT1DM pancreases, was 67%. In non-diabetic control pancreases, no insulitis was observed. In the islets of FT1DM, the numbers of CD45+, CD3+, CD8+, CD68+ and CD11c+ MNCs were significantly higher than in the control group. In the exocrine pancreas of FT1DM, the numbers of CD3+ T cells, CD8+ T cells, CD68+ macrophages and CD11c+ dendritic cells were significantly higher than in the control group. Infiltrating CD8+ T cells, CD68+ macrophages and CD11c+ dendritic cells were observed around exocrine acinar cells in FT1DM. VP1 and CXCL10 were detected in islet cells as well as exocrine cells in FT1DM. CXCL10 positive exocrine cells were surrounded by CXCR3+ T cells. <b>Conclusion:</b> The pathological findings suggested that suppression of activated CXCL10-CXCR3 axis in exocrine as well as endocrine pancreas is a new therapeutic target in FT1DM and possibly in enter virus associated acute-onset type1 diabetes.<b>Precis:</b>This study reports the association between exocrine pancreas damage and enterovirus infection in fulminant type 1 diabetes(FT1DM).Importanat factors identified in the pancreas of FT1DM were enterovirus infection,inflammation involving chemokine/cytokine(CXCL10/CXCR3) network and apoptosis/necrosis of the pancreatic exocrine cells and islet cells. <b></b><i></i><sub></sub><sup></sup><b></b><b></b><br>
DOI: 10.7284/124125
title: TSG (Thermosalinograph) data collected during research cruise OC1605X using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124180
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1606A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124172
title: Fluorometer data collected during research cruise OC1606A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380503.v3
title: Unique Inflammatory Changes in Exocrine and Endocrine Pancreas in Enterovirus-induced Fulminant Type 1 Diabetes

description: <b>Context</b><b>: </b>There is scant report on the pathological changes of the exocrine and endocrine pancreas in fulminant type 1 diabetes mellitus (FT1DM). <b>Objective:</b> To clarify the distinct pathological changes in the exocrine as well as the endocrine pancreas shortly after onset of the diabetes in FT1DM.<b></b> <b>Method:</b> The exocrine and endocrine pancreases of 3 FT1DM and 17 non-diabetic controls were immunohistochemically examined for islet and exocrine tissue inflammation, infiltrating mononuclear cell (MNC) CD subtype, enterovirus capsid protein 1 (VP1) localization, and CXC chemokine ligand 10 (CXCL10) and CXC chemokine receptor 3 (CXCR3) expression. <b>Results:</b><b> </b>The median frequency of insulitis, observed in all FT1DM pancreases, was 67%. In non-diabetic control pancreases, no insulitis was observed. In the islets of FT1DM, the numbers of CD45+, CD3+, CD8+, CD68+ and CD11c+ MNCs were significantly higher than in the control group. In the exocrine pancreas of FT1DM, the numbers of CD3+ T cells, CD8+ T cells, CD68+ macrophages and CD11c+ dendritic cells were significantly higher than in the control group. Infiltrating CD8+ T cells, CD68+ macrophages and CD11c+ dendritic cells were observed around exocrine acinar cells in FT1DM. VP1 and CXCL10 were detected in islet cells as well as exocrine cells in FT1DM. CXCL10 positive exocrine cells were surrounded by CXCR3+ T cells. <b>Conclusion:</b> The pathological findings suggested that suppression of activated CXCL10-CXCR3 axis in exocrine as well as endocrine pancreas is a new therapeutic target in FT1DM and possibly in enter virus associated acute-onset type1 diabetes.<b>Precis:</b>This study reports the association between exocrine pancreas damage and enterovirus infection in fulminant type 1 diabetes(FT1DM).Importanat factors identified in the pancreas of FT1DM were enterovirus infection,inflammation involving chemokine/cytokine(CXCL10/CXCR3) network and apoptosis/necrosis of the pancreatic exocrine cells and islet cells. <b></b><i></i><sub></sub><sup></sup><b></b><b></b><br>
DOI: 10.7284/124169
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1606A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26180/5c046fcca3d4a
title: participant 28 EEG.zip

description: Participant 28, day 1 and 2 EEG data
DOI: 10.7284/124173
title: Gyrocompass data collected during research cruise OC1606A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124174
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1606A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124175
title: Radiometer data collected during research cruise OC1606A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7380440
title: Molecular dynamics of the intramolecular 1, 3-dipolar ene reaction of a nitrile oxide and an alkene: non-statistical behavior of a reaction involving a diradical intermediate<sup>*</sup>

description: Potential energy surfaces and molecular dynamics of the intramolecular 1, 3-dipolar cycloaddition and ene reaction of a nitrile oxide with an alkene were performed in the gas phase and in dichloromethane with density functional theory. One hundred trajectories were propagated in the gas phase and in dichloromethane, respectively. Twenty percent of the trajectories in the gas phase involve bicyclic intermediate and the mean time gap is 472fs. A dynamically stepwise reaction is observed. In dichloromethane, more reactive trajectories were obtained and the time gap is larger than that in the gas phase.