cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3187571.v2
title: NUP98 fusion oncoproteins interact with the APC/C<sup>Cdc20</sup> as a pseudosubstrate and prevent mitotic checkpoint complex binding

description: <i>NUP98</i> is a recurrent partner gene in translocations causing acute myeloid leukemias and myelodisplastic syndrome. The expression of NUP98 fusion oncoproteins has been shown to induce mitotic spindle defects and chromosome missegregation, which correlate with the capability of NUP98 fusions to cause mitotic checkpoint attenuation. We show that NUP98 oncoproteins physically interact with the APC/C<sup>Cdc20</sup> in the absence of the NUP98 partner protein RAE1, and prevent the binding of the mitotic checkpoint complex to the APC/C<sup>Cdc20</sup>. NUP98 oncoproteins require the GLEBS-like domain present in their NUP98 moiety to bind the APC/C<sup>Cdc20</sup>. We found that NUP98 wild-type is a substrate of APC/C<sup>Cdc20</sup> prior to mitotic entry, and that its binding to APC/C<sup>Cdc20</sup> is controlled via phosphorylation of a PEST sequence located within its C-terminal portion. We identify S606, within the PEST sequence, as a key target site, whose phosphorylation modulates the capability of NUP98 to interact with APC/C<sup>Cdc20</sup>. We finally provide evidence for an involvement of the peptidyl-prolyl isomerase PIN1 in modulating the possible conformational changes within NUP98 that lead to its dissociation from the APC/C<sup>Cdc20</sup> during mitosis. Our results provide novel insight into the mechanisms underlying the aberrant capability of NUP98 oncoproteins to interact with APC/C<sup>Cdc20</sup> and to interfere with its function.
DOI: 10.6084/m9.figshare.7518470.v1
title: Image segmentation and particles classification using texture analysis method

description: Introduction: Ingredients of oily fish include a large amount of polyunsaturated fatty acids, which are important elements in various metabolic processes of humans, and have also been used to prevent diseases. However, in an attempt to reduce cost, recent developments are starting a replace the ingredients of fish oil with products of microalgae, that also produce polyunsaturated fatty acids. To do so, it is important to closely monitor morphological changes in algae cells and monitor their age in order to achieve the best results. This paper aims to describe an advanced vision-based system to automatically detect, classify, and track the organic cells using a recently developed SOPAT-System (Smart On-line Particle Analysis Technology), a photo-optical image acquisition device combined with innovative image analysis software. Methods The proposed method includes image de-noising, binarization and Enhancement, as well as object recognition, localization and classification based on the analysis of particles’ size and texture. Results The methods allowed for correctly computing cell’s size for each particle separately. By computing an area histogram for the input images (1h, 18h, and 42h), the variation could be observed showing a clear increase in cell. Conclusion The proposed method allows for algae particles to be correctly identified with accuracies up to 99% and classified correctly with accuracies up to 100%.
DOI: 10.17632/dy33nscws3
title: Research database on the impact of music education on adolescents' subjective well-being under the perspective of sustainable development: based on bibliometrics from 2000 to 2024

description: This study conducted a systematic literature review on the impact of music education on adolescents' subjective well-being under the perspective of sustainable development. Based on the PICO framework, a search strategy was constructed, and adolescents aged 6-18, sustainable music education practices, conventional control environments without music education, and multidimensional indicators of subjective well-being were embedded in interdisciplinary database retrieval (covering Web of Science, ProQuest, and MEDLINE). Multi-level keyword expansion was used to ensure the comprehensiveness of literature collection. The study strictly followed the PRISMA standard to implement a four-stage screening. After data preprocessing, initial screening of title keywords, literature integrity verification, and full-text strong relevance review, 76 high-quality documents were finally included from the 2568 documents initially retrieved. In the data processing stage, tools such as Zotero, VOSviewer, and CiteSpace were integrated to analyze the time distribution, interdisciplinary characteristics, and core variable correlation of the literature, and to build a structured database in the research field of "sustainable development-music education-adolescent well-being", which provides a replicable scientific analysis framework for revealing the current status of research in this field, evolutionary laws, and subsequent educational policy formulation and intervention research.
DOI: 10.25386/genetics.12284174.v1
title: Supplemental Material for Hämälä and Tiffin, 2020

description: Supplemental_figs_tables.pdf contains supplemental figures and tables. File_S1.xlsx contains compiled genomic features. File_S2.slim contains a code for running simulations.
DOI: 10.6084/m9.figshare.14169659.v1
title: Supplementary Material for: Evolution of Tandemly Arranged Repetitive DNAs in Three Species of Cyprinoidei with Different Ploidy Levels

description: Polyploid species represent a challenge for both cytogenetic and genomic studies due to their high chromosome numbers and the morphological similarity between their paralogous chromosomes. This paper describes the use of low-coverage high-throughput sequencing to identify the 14 most abundant tandemly arranged repetitive elements in the paleotetraploid genome of the crucian carp (<i>Carassius carassius</i>, 2n = 100). These repetitive elements were then used for molecular cytogenetic studies of a closely related functionally triploid form of the Prussian carp (<i>Carassius gibelio,</i> 3n = 150 + Bs) and a relatively distant diploid species, the tench (<i>Tinca tinca</i>, 2n = 48). According to their distribution on the chromosomes of the 3 aforementioned species, the repetitive elements here identified can be divided into 5 groups: (1) those specific to a single genomic locus in both <i>Carassius</i> species, despite the recent carp-specific genome duplication; (2) those located in a single genomic locus of <i>T. tinca</i>, but amplified in one or both <i>Carassius</i> species; (3) those massively amplified in the B chromosomes of <i>C. gibelio</i>; (4) those located in a single locus in <i>C. gibelio</i>, but amplified in many blocks in <i>C. carassius</i>; and (5) those located in multiple pericentromeric loci in both <i>Carassius</i> species. Our data indicate that some of the repetitive elements are highly conserved in cyprinoid species and may serve as good cytogenetic and genomic markers for discriminating paralogous chromosomes, while others are evolutionarily recent, and their amplification may be related to the last whole-genome duplication event.
DOI: 10.6084/m9.figshare.19514341.v1
title: P12 dataset for Raindrop

description: The authors are: Xiang Zhang, Marko Zeman, Theodoros Tsiligkaridis, Marinka Zitnik<br>- Paper: Graph-Guided Network For Irregularly Sampled Multivariate Time Series, (Accepted by ICLR 2022) <br><br>- Paper link: https://openreview.net/pdf?id=Kwm8I7dU-l5<br>- Github repo: https://github.com/mims-harvard/Raindrop<br>- Project website: https://zitniklab.hms.harvard.edu/projects/Raindrop/<br>
DOI: 10.6084/m9.figshare.28308743.v4
title: Data from population genetic studies and code supporting the analyses presented in the manuscript: "Global-scale analysis reveals importance of environment and species traits in spatial patterns of riparian plants’ genetic diversity".

description: In riparian zones along rivers, plant demography is shaped by hydrologic disturbances, the dendritic structure of the river networks, and asymmetric gene flow due to the prevalence of unidirectional dispersal by hydrochory. Downstream-biased dispersal may lead to the accumulation of genetic diversity in populations situated lower within the catchment area – a phenomenon referred to as ‘downstream increase in intraspecific genetic diversity’ (DIGD). Our study aimed to test if the presence of this pattern in riparian plants depends on the species traits, sampling design, and ecosystem integrity. We extracted data from population genetic studies of riparian plants to analyze factors linked to the pattern.Appendix 1: Dataset summary Appendix 2: List of source publicationsAppendix 3: Full data table used in the analysesAppendix 4: R script supporting the analyses<br><br>
DOI: 10.17632/g5vx38jh5j
title: Data for: The Functional Nasal Anatomy of the Pike, Esox lucius L.

description: Set of 1807 TIFF images from micro-CT scan of head of juvenile pike, Esox lucius (specimen from Natural History Museum, London, UK, catalogue number BMNH 1963.4.26.2). Full details of scan given in manuscript
DOI: 10.6084/m9.figshare.28732919.v1
title: Weather Files

description: Daily weather files adapted from model outputs of Toon et al. 2019 (https://doi.org/10.1126/sciadv.aay5478) and Coupe et al. 2019 (https:// doi.org/10.1029/2019JD030509) for 5976 land grids on Earth of each scenario. The weather files are named as _latitude_longitude.weather.The scenarios are defined as below: Name | Scenario | Included simulation years |----------------------------------------------------------------------------- nw_cntrl_03 | Control case | 1 -- 21 nw_targets_01 | 5 Tg case | 5 -- 19 nw_targets_04 | 16 Tg case | 5 -- 19 nw_targets_02 | 27 Tg case | 5 -- 19 nw_targets_03 | 37 Tg case | 5 -- 19 nw_targets_05 | 47 Tg case | 5 -- 19 nw_ur_150_07 | 150Tg case | 5 -- 34<br>
DOI: 10.17632/4fzdts2nj6
title: The deep evolutionary roots of Cannabis and Humulus: fossils, genomics, and geography

description: Although the duo Cannabis and Humulus includes some of the earliest and most versatile domesticated plants, their evolution remains poorly understood. We revise the fossil record of Cannabis and Humulus to constrain the age and geographic location of the plants. Exquisite fossils from the Eocene of North America assigned to Humulus lupulus, suggest that the common hop may represent a true ‘living fossil’ that has experienced a prolonged period of evolutionary stasis. Our molecular clock analyses reveal that the common ancestor of Cannabis and Humulus diverged in the Eocene to Paleocene, coinciding with the emergence of steppe biomes in Eurasia during the late Eocene, constraining the geographical origin of both plants and offering a framework for testing causal hypotheses of their divergence.
DOI: 10.17632/r5tfjc8j2m
title: 2018 China Disaster Preparedness Survey-why not prepared

description: This is a survey data conducted in 2018 covering all provinces of China. It primarily covers the topics of disasters, risk perception, and preparedness.
DOI: 10.17632/zddxppmvy8
title: Origin blot images of the manuscript (Bifunctional transcription factor GhMYB4 orchestrates transition from elongation to secondary cell wall synthesis tradeoff in cotton fiber). Lu Qiao ea al.

description: Origin blot images of the manuscript (Bifunctional transcription factor GhMYB4 orchestrates transition from elongation to secondary cell wall synthesis tradeoff in cotton fiber).
DOI: 10.6084/m9.figshare.13134485.v1
title: Supplementary Material for: Podocyte-Released Migrasomes in Urine Serve as an Indicator for Early Podocyte Injury

description: <b><i>Background:</i></b> Levels of urinary microvesicles, which are increased during various kidney injuries, have diagnostic potential for renal diseases. However, the significance of urinary microvesicles as a renal disease indicator is dampened by the difficulty to ascertain their cell source. <b><i>Objectives:</i></b> The aim of this study was to demonstrate that podocytes can release migrasomes, a unique class of microvesicle with size ranging between 400 and 2,000 nm, and the urine level of migrasomes may serve as novel non-invasive biomarker for early podocyte injury. <b><i>Method:</i></b> In this study, immunofluorescence labeling, electronic microscopy, nanosite, and sequential centrifugation were used to purify and analyze migrasomes. <b><i>Results:</i></b> Migrasomes released by podocytes differ from exosomes as they have different content and mechanism of release. Compared to podocytes, renal tubular cells secrete markedly less migrasomes. Moreover, secretion of migrasomes by human or murine podocytes was strongly augmented during podocyte injuries induced by LPS, puromycin amino nucleoside (PAN), or a high concentration of glucose (HG). LPS, PAN, or HG-induced podocyte migrasome release, however, was blocked by Rac-1 inhibitor. Strikingly, a higher level of podocyte migrasomes in urine was detected in mice with PAN-nephropathy than in control mice. In fact, increased urinary migrasome number was detected earlier than elevated proteinuria during PAN-nephropathy, suggesting that urinary migrasomes are a more sensitive podocyte injury indicator than proteinuria. Increased urinary migrasome number was also detected in diabetic nephropathy patients with proteinuria level &lt;5.5 g/day. <b><i>Conclusions:</i></b> Our findings reveal that podocytes release the “injury-related” migrasomes during migration and provide urinary podocyte migrasome as a potential diagnostic marker for early podocyte injury.
DOI: 10.6084/m9.figshare.26300563.v1
title: MARIAE - BLASTX vs TrEMBL

description: Annotation Diamond database trEMBL Aedes zammitii
DOI: 10.6084/m9.figshare.28102766.v1
title: Financial development and International trade in Africa_Dataset.xlsx

description: To verify the relationship between trade variables and financial development in Africa. We mobilize data from 39 African economies for the period 1990-2021. To achieve this complex measure, we use the financial development index imported from the International Monetary Fund (IMF) statistical database. The variable to be explained, trade openness (LTRADE), is presented by the logarithm of the sum of exports and imports of goods and services, as a percentage of GDP, the logarithm of the volume of exports of goods and services as a percentage of GDP (LEXP), and the logarithm of the volume of imports of goods and services as a percentage of GDP (LIMP). Control variables are also included, namely, economic growth represented by the logarithm of real GDP per capita (LGDPPC), population growth, which may reflect the size of the domestic market, measured by the logarithm of the total population (LPOP), and external financing represented by the logarithm of net foreign direct investment inflows, as a percentage of GDP (LFDI). Data for these variables were imported from the World Bank's World Development Indicator (WDI).
DOI: 10.6084/m9.figshare.3502757.v1
title: Boston-area Assignee Benchmark

description: The manual disambiguation of EPO/PCT assignees in the Boston area, used as one of the benchmarks in the paper. In all columns, if more than one ID is found, the elements are comma separated. 5 columns, 22528 rows, "|" delimited; the columns are--Pub\_number: the publication number of the patent--ManualIDs: The manually disambiguated IDs of each inventor on the patent. Each ID has the following structure: (1) a leading character of "r", indicating within-region, or "e", indicating an external collaborator; (2) a number with no specific meaning; (3) an "\_"; and (4) a manual classification of the type of institution. The institution can have the values "university", "hospital", "company", "lab", and "other".--OurIDs: the output of our algorithm on this patent. --HanIDs: The HAN IDs for this patent. --RawNames: the undisambiguated names on the patent, with case, punctuation, and spacing dropped. Note that there is no correspondence between the boston-area IDs and the paris-area IDs. Do not attempt to mix the two disambiguations together as incorrect ID-clashes are possible.
DOI: 10.6084/m9.figshare.5081998.v1
title: OULAD: Open University Learning Analytics Dataset

description: Open University Learning Analytics Dataset (OULAD) contains data about courses, students and their interactions with Virtual Learning Environment (VLE) for seven selected courses (called modules). Presentations of courses start in February and October - they are marked by “B” and “J” respectively. The dataset consists of tables connected using unique identifiers. All tables are stored in the csv format.<br>
DOI: 10.17632/9hyv69sm82
title: Model prediction of xylem water potential in growing tomato plant under heterogeneous growing conditions dataset

description: This data repository contains data from greenhouse and tomato growth monitoring. In 2019, 2020, 2023, 2024 data were collected at Proefcentrum Hoogstraaten (Voort 71, 2328 Hoogstraten, Belgium) during GROW! project (https://www.grensregio.eu/projecten/grow). In 2021 and 2022 data were collected at KU Leuven bioengineering greenhouse (Celestijnenlaan 300, 3001 Heverlee). 

The repository consists of:
• environmental measurements (Environment folder): temperature, relative humidity, light irradiation and/or photosynthetic active radiation (PAR);
• tomato plant measurements (Plant folder): stem length, stem diameter, stem fresh weight, stem dry weight, leaf area, leaf fresh weight, leaf dry weight, stem water potential and weight change for transpiration. Fruit growth: diameter, fresh weight, dry weight.
 
Each folder contains file Info.xlsx explaining recorded variables, units and sensors used.

The dataset is part of linked publication "Model prediction of xylem water potential in growing tomato plant under heterogeneous growing conditions"
DOI: 10.17632/xrwb9m37gd
title: RailEnV-PASMVS: a dataset for multi-view stereopsis training and reconstruction applications

description: A Perfectly Accurate, Synthetic dataset featuring a virtual railway EnVironment for Multi-View Stereopsis (RailEnV-PASMVS) is presented, consisting of 40 scenes and 79,800 renderings together with ground truth depth maps, extrinsic and intrinsic camera parameters and binary segmentation masks of all the track components and surrounding environment. Every scene is rendered from a set of 3 cameras, each positioned relative to the track for optimal 3D reconstruction of the rail profile. The set of cameras is translated across the 100-meter length of tangent (straight) track to yield a total of 1,995 camera views. Photorealistic lighting of each of the 40 scenes is achieved with the implementation of high-definition, high dynamic range (HDR) environmental textures. Additional variation is introduced in the form of camera focal lengths, random noise for the camera location and rotation parameters and shader modifications of the rail profile. Representative track geometry data is used to generate random and unique vertical alignment data for the rail profile for every scene. This primary, synthetic dataset is augmented by a smaller image collection consisting of 124 manually annotated photographs for improved segmentation performance. The specular rail profile represents the most challenging component for MVS reconstruction algorithms, pipelines and neural network architectures, increasing the ambiguity and complexity of the data distribution. RailEnV-PASMVS represents an application specific dataset for railway engineering, against the backdrop of existing datasets available in the field of computer vision, providing the precision required for novel research applications in the field of transportation engineering. File descriptions: + RailEnV-PASMVS.blend (227 Mb) - Blender file (developed using Blender version 2.8.1) used to generate the dataset. The Blender file packs only one of the HDR environmental textures to use as an example, along with all the other asset textures. + RailEnV-PASMVS_sample.png (28 Mb) - A visual collage of 30 scenes, illustrating the variability introduced by using different models, illumination, material properties and camera focal lengths. + geometry.zip (2 Mb) - Geometry CSV files used for all the scenes. The Bezier curve defines the geometry of the rail profile (10 mm interval). + sampleset_19.zip (2.5 Gb) - A single RailEnV-PASMVSD scene sample for easy viewing and evaluations. For the full dataset please use the link provided below. + PhysicalDataset.zip (1.8 Gb) - A smaller, secondary dataset of 124 manullay annotated photographs of railway environments; only the railway profiles are annotated. GitHub page to access the full RailEnV-PASMVS dataset (hosted on Google Drive): https://github.com/andrebroekman/RailEnV-PASMVS
DOI: 10.6084/m9.figshare.19368137.v1
title: Functional annotation for Bombyx mori by Fanflow4Insects

description: Please cite thiese data with DOI of figshare or the paper (DOI: 10.3390/insects13070586). <br> Quantified expression values (averaged) for <em>Bombyx mori</em> from transcriptomes of six tissues are also included in the expression-level file. Functional annotation from the published expression matrix of <em>Bombyx mori</em> by Fanflow4Insects. The functional annotation includes 'protein' level, 'transcript' level and 'expression' level.<br> <br>
DOI: 10.6084/m9.figshare.26333452.v1
title: The provincial shapefile and whole database

description: Database of transformer load of districts in Guangxi Province, China, during 2021 and 2023.
DOI: 10.6084/m9.figshare.3527165.v1
title: Appendix A. A table presenting the numbers of animals from each species that were included in each of the 12 species compositions used in the experiment, for both the closed and open treatments, for one local pool, and a table showing the mean dry mass for one specimen of each species.

description: A table presenting the numbers of animals from each species that were included in each of the 12 species compositions used in the experiment, for both the closed and open treatments, for one local pool, and a table showing the mean dry mass for one specimen of each species.
DOI: 10.17632/4x37zz82k8
title: urbangEnCy

description: An emergency events dataset based on citizen sensors for monitoring urban scenarios in Ecuador
DOI: 10.17632/s3dvgmfvgs
title: Ecdysone signaling determines lateral polarity and remodels neurites to form Drosophila’s left-right brain asymmetry. Sakamura et al.

description: We found that the AB acquires left-right asymmetry via two steps during the pupal stage: The first step is the initial left-right symmetric formation of the AB; The second step is its lateralization by neurite growth in the right AB and neurite remodeling in the left AB. We also found that the lateralization of the AB is dependent on dynamin, and that endocrine (ecdysone) signaling in neurons determines the AB’s left-right polarity. We showed the raw images acquired by confocal microscopy (LSM700 or LSM880 carl zeiss)
DOI: 10.17632/xx46xthc5z
title: Dataset for: "On the estimation of the moving mass of a TMD installed on a lively structure"

description: This dataset contains all the data and code required to reproduce the results shown in the article entitled "On the estimation of the moving mass of a TMD installed on a lively structure", published in Applied Sciences by the same authors in May 2021 (DOI: 10.3390/app11104712). The data folder contains a "readme" file with a more detailed description of the files contents.