cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6827413
title: Scripts of data selection and analysis: role of community size in driving spatial variation in riverine fish metacommunities around the world

description: Updated version of the HMSC code. Here we provide R scripts used to select and analyze data to investigate the role of community size in mediate the strength of ecological drift and environmental selection in driving community spatial variation in metacommunities. We selected fish abundance data publicly available and measured community size to model against beta diversity and beta deviation metrics (Shannon and Jaccard-Chao) and against other communities descriptors (evenness, rank difference and richness difference). We also selected environmental variables to measure the strength of community-environment relationships using Hierarchical Modelling of Species Communities and model against community size.
description: C.M.J. was supported by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior-Brasil (CAPES) - Finance Code 001 for funding. T.S. was supported by grant #21/00619-7, São Paulo Research Foundation (FAPESP) and by grant #309496/2021-7, Brazilian National Council for Scientific and Technological Development (CNPq).
DOI: 10.5281/zenodo.7150669
title: Scripts of data selection and analysis: role of community size in driving spatial variation in riverine fish metacommunities around the world

description: Here we describe how we obtained and analyzed data for the study: High compositional dissimilarity among small communities is decoupled from environmental variation (10.32942/osf.io/vngse) We investigated the role of community size in mediate the strength of ecological drift and environmental selection in driving community spatial variation in metacommunities. This is an updated version where we used process-based simulations to identify β-diversity metrics and community-environment measures that were appropriate to investigate the role of those assembly processes along a gradient of community size.
description: C.M.J. was supported by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior-Brasil (CAPES) - Finance Code 001 for funding. T.S. was supported by grant #21/00619-7, São Paulo Research Foundation (FAPESP) and by grant #309496/2021-7, Brazilian National Council for Scientific and Technological Development (CNPq).
DOI: 10.6084/m9.figshare.22230103
title: Soluble salt of Chinese Loess Plateau

description: This dataset includes the soluble salt ions of Jiuzhoutai and Lingtai loess section in the Chinese Loess Plateau. Before soluble salts measurement, all samples were dried and ground in an agate mortar and passed through a 100 μm sieve. Then, a 10 g sample was weighed and mixed with distilled water (ratio of 1:5), thoroughly mixed, centrifuged and the supernatant extracted for soluble salts measurements. The supernatant was measured using the ICS-2500 ion chromatograph (DIONEX, USA), which can measure seven major ions in solution, including the anions Cl<sup>−</sup>, NO<sup>3−</sup>, SO<sub>4</sub><sup>2−</sup> and the cations Na<sup>+</sup>, K<sup>+</sup>, Mg<sup>2+</sup> and Ca2+, with measurement accuracy of 0.1%–0.3%. All experiments were conducted in the Key Laboratory of Western China’s Environmental Systems, Lanzhou University.
DOI: 10.6084/m9.figshare.22230103.v1
title: Soluble salt of Chinese Loess Plateau

description: This dataset includes the soluble salt ions of Jiuzhoutai and Lingtai loess section in the Chinese Loess Plateau. Before soluble salts measurement, all samples were dried and ground in an agate mortar and passed through a 100 μm sieve. Then, a 10 g sample was weighed and mixed with distilled water (ratio of 1:5), thoroughly mixed, centrifuged and the supernatant extracted for soluble salts measurements. The supernatant was measured using the ICS-2500 ion chromatograph (DIONEX, USA), which can measure seven major ions in solution, including the anions Cl<sup>−</sup>, NO<sup>3−</sup>, SO<sub>4</sub><sup>2−</sup> and the cations Na<sup>+</sup>, K<sup>+</sup>, Mg<sup>2+</sup> and Ca2+, with measurement accuracy of 0.1%–0.3%. All experiments were conducted in the Key Laboratory of Western China’s Environmental Systems, Lanzhou University.
DOI: 10.6084/m9.figshare.22232173
title: Flow Data for Varley et al 2023

description: Flow data for Varley et al 2023. <br>
DOI: 10.6084/m9.figshare.22232173.v1
title: Flow Data for Varley et al 2023

description: Flow data for Varley et al 2023. <br>
DOI: 10.34740/kaggle/dsv/5127947
title: YouTube Daily
DOI: 10.5281/zenodo.7707862
title: Artifact Evaluation for "ARMore: Pushing Love Back Into Binaries"

description: Artifact Evaluation for "ARMore: Pushing Love Back Into Binaries". Please see the relevant Artifact Appendix pdf from Usenix for instructions on how to run it.
DOI: 10.5281/zenodo.7707863
title: Artifact Evaluation for "ARMore: Pushing Love Back Into Binaries"

description: Artifact Evaluation for "ARMore: Pushing Love Back Into Binaries". Please see the relevant Artifact Appendix pdf from Usenix for instructions on how to run it.
DOI: 10.5281/zenodo.7707936
title: Artifact Evaluation for "ARMore: Pushing Love Back Into Binaries"

description: Artifact Evaluation for "ARMore: Pushing Love Back Into Binaries". Please see the relevant Artifact Appendix pdf from Usenix for instructions on how to run it.
DOI: 10.6084/m9.figshare.22232218
title: Unraveling the molecular mechanism of novel leukemia mutations on NTRK2 (A203T & R458G) and NTRK3 (E176D & L449F) genes using molecular dynamics simulations approach

description: Modeled native and mutant Trk_B and Trk_C proteins in PDB format. <br> Figure 1 to 7 generated using the attached xvg files which used by XMGRACE tool.
DOI: 10.6084/m9.figshare.22226998
title: virome.gbK and Supplemented material

description: The retrieved viral sequences in “gbk” format. Supplemented material: Table S1 & S2; Figure S1.
DOI: 10.6084/m9.figshare.22226998.v3
title: virome.gbK and Supplemented material

description: The retrieved viral sequences in “gbk” format. Supplemented material: Table S1 & S2; Figure S1.
DOI: 10.6084/m9.figshare.22226998.v2
title: virome.gbK

description: The retrieved viral sequences in “gbk” format .
DOI: 10.5523/bris.dlk12p8i5aqc2gnp9qzfjgtbw
title: Evaluating the Implementation of the STAR CARE Pathway: An interview study

description: IRAS number: 263049 REC Number: 19/HRA/3168 Funding: RP-PG-0613-20001 Start date: 01.07.2019 End date: 31.01.2020 Brief Summary: The aim of this evaluation is to understand how the STAR care pathway was implemented within a multi-centre randomised controlled trial and to produce recommendations for how it can best be implemented into wider practice. Extended Scope Practitioners (ESPs) and Principal Investigators (PIs) from each of the eight trial sites, who were involved in delivering the STAR care pathway during the trial, were invited to participate in a telephone interview.
DOI: 10.34740/kaggle/dsv/5128072
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.7708071
title: Antimicrobial activity of GmCP8 and expression of GmCP8 in Galleria mellonella

description: This file contains data published as a Figs 2,3,4,6 in Scientific Reports 2022. 12:11737. There, one can find all necessary descriptions.https://doi.org/10.1038/s41598-022-15929-6 The data are available on request. The work was financed by National Science Centre, project number 2020/37/B/NZ6/00167
DOI: 10.24341/tethys.199
title: Occurrence of planktic foraminifera in drill core NÖ-02 – Franzhausen
title: Vorkommen von planktischen Foraminiferen in Kernbohrung NÖ-02 – Franzhausen
title: Supplement to "The Lower - Middle Miocene transition (Karpatian – Badenian) in the Krems Embayment (Central Paratethys, Lower Austria): a multistratigraphic approach and the role of the Diendorf-Boskovice Fault System"
title: Anhang zu "The Lower - Middle Miocene transition (Karpatian – Badenian) in the Krems Embayment (Central Paratethys, Lower Austria): a multistratigraphic approach and the role of the Diendorf-Boskovice Fault System"
title: Table S6_Occurrence of planktic foraminifera in drill core NÖ-02
title: Tabelle S6_Vorkommen von planktischen Foraminiferen in Kernbohrung NÖ-02

description: The Krems Embayment represents the westernmost fully marine depositional environments of the Karpatian and Badenian transgressions in the Central Paratethys. Four deep drill cores were investigated to analyse the bio- and lithostratigraphic, and tectonic relations. The investigated core sections cover the Karpatian Laa Formation and the Badenian Grund Formation. This dataset contains the counting data of picked planktic foraminifera from drill core NÖ-02. Despite of this, aliquots (splits) for the calculation of the total amounts of ocurring planktic foraminiferal species as well as additional gained index species in the samples are given.
description: Die Kremser Bucht ist das am weitesten westlich gelegene vollmarine Sedimentationsgebiet der karpatischen und badenischen Transgressionen in der Zentralen Paratethys. Die bio- und lithostratigraphischen sowie tektonischen Beziehungen von vier gekernten Tiefbohrungen wurden untersucht und analysiert. Die untersuchten Kernabschnitte umfassen die Laa-Formation (Karpatium) und die Grund-Formation (Badenium). Dieser Datensatz enthält die Zähldaten der Vorkommen planktischer Foraminiferen in der Kernbohrung NÖ-02. Daneben sind sowohl die Teilungen (splits) für die Hochrechnung der in der jeweiligen Probe vorkommenden planktischen Foraminiferenarten als auch zusätzlich aus der Probe gewonnenen Leitformen angegeben.
description: Samples were washed, dried and split into managable aliquots. These were picked completely for foraminifera and the number of each planktic foraminiferal species was counted. Additional index species were gained from the unpicked residue. Dry weight data of samples can be found in Table S2_SedData_NÖ-02.csv.
description: The publication of these data is part of the GK 50/25 geological mapping program. The data serve as a base for several scientific papers, geological maps, and explanatory reports dealing with the paleontology, sedimentology, or tectonic development of the area around Krems in Lower Austria.
DOI: 10.6084/m9.figshare.21587022
title: selenaydnryükseklisans.sav

description: FACTORS ASSOCIATED SCHOOL READINESS
DOI: 10.6084/m9.figshare.21587022.v1
title: selenaydnryükseklisans.sav

description: FACTORS ASSOCIATED SCHOOL READINESS
DOI: 10.6084/m9.figshare.22232344
title: Supplementary UHPLC–MSMS data.docx

description: Ultra-performance liquid chromatography-tandem mass spectrometry (UHPLC–MS/MS) analysis performed on ~5,000 L3 larvae to assess the levels of different neurotransmitters (glutamate, acetylcholine, GABA, and dopamine) in chc-1[P892L] animals.
DOI: 10.6084/m9.figshare.22232344.v1
title: Supplementary UHPLC–MSMS data.docx

description: Ultra-performance liquid chromatography-tandem mass spectrometry (UHPLC–MS/MS) analysis performed on ~5,000 L3 larvae to assess the levels of different neurotransmitters (glutamate, acetylcholine, GABA, and dopamine) in chc-1[P892L] animals.
DOI: 10.6084/m9.figshare.22232227
title: 22Rv1_ATAC_0nM_rep1

description: 22Rv1_ATAC_0nM_rep1
DOI: 10.6084/m9.figshare.22232227.v2
title: 22Rv1_ATAC_0nM_rep1

description: 22Rv1_ATAC_0nM_rep1
DOI: 10.6084/m9.figshare.22232227.v1
title: 22Rv1_ATAC_0nM_rep1.bw

description: 22Rv1_ATAC_0nM_rep1
DOI: 10.34740/kaggle/dsv/5128283
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.22232383
title: DATASET FOR Establishing the Anti-hyperglycemic potency of ethanol extract of Moringa oleifera leaf .docx

description: <strong>Figure 1</strong>. Blood glucose (BG) levels of experimental animals at various exposure times. BG = 76.77-31.12X1 – 37.70X2 – 0.71X3 +37.38X1X2 + 37.45X12 +37.98X22 + 11.11X33 <br> <strong>Figure 2: Response surface plot of body weight against exposure time and concentration of the </strong><em><strong>M. oleifera</strong></em><strong> extract </strong> Body weight (g) = 84.11-0.297X1+0.159X2 +0.011X1X2+0.004X22-0.0067X32 <br> <strong>Figure 3: Response surface plot of red blood cell count against concentration and exposure time of </strong><em><strong>M. oleifera</strong></em><strong> extract on the animal models.</strong> Red blood cell count = 6.46 - 011X1-0.0091X2-0.030X3 +0.006X1X2-0.00048X1X3 <br> <strong>Figure 4: Response surface plot of glutathione count against concentration and exposure time of </strong><em><strong>M. oleifera</strong></em><strong> extract on diabetic rat.</strong> Glutathione = 285.58-2.59X1-3.10X2– 2.216X3+0.029X1X2 +0.027X12+0.024X2X2 <br> <strong>Figure 5: Response surface plot of MDA against exposure time and concentration of </strong><em><strong>M. oleifera</strong></em><strong> extract administered on the animal models. </strong> MDA =11.58+0.060X1+ 0.0627X2+0.002x3+0.00095X1X2 – 0.00051X12-0.00067X22+0.00023X32 <br> <strong>Figure 6:</strong> <strong>Response surface plot of kidney weight against exposure time and concentration of </strong><em><strong>M. oleifera</strong></em><strong> extract administered on the animal models. </strong> SOD =138.864+0.88X1+1.563X2+1.069X3 -0.13X22 <br> <strong>Figure 7: Response surface plot of weight of kidney against </strong> <strong>exposure and concentration of the test substance</strong> Wt. of kidney (g) = 0.521+0.00072X1+0.00072X2-0.0000105X3 <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.22232383.v1
title: DATASET FOR Establishing the Anti-hyperglycemic potency of ethanol extract of Moringa oleifera leaf .docx

description: <strong>Figure 1</strong>. Blood glucose (BG) levels of experimental animals at various exposure times. BG = 76.77-31.12X1 – 37.70X2 – 0.71X3 +37.38X1X2 + 37.45X12 +37.98X22 + 11.11X33 <br> <strong>Figure 2: Response surface plot of body weight against exposure time and concentration of the </strong><em><strong>M. oleifera</strong></em><strong> extract </strong> Body weight (g) = 84.11-0.297X1+0.159X2 +0.011X1X2+0.004X22-0.0067X32 <br> <strong>Figure 3: Response surface plot of red blood cell count against concentration and exposure time of </strong><em><strong>M. oleifera</strong></em><strong> extract on the animal models.</strong> Red blood cell count = 6.46 - 011X1-0.0091X2-0.030X3 +0.006X1X2-0.00048X1X3 <br> <strong>Figure 4: Response surface plot of glutathione count against concentration and exposure time of </strong><em><strong>M. oleifera</strong></em><strong> extract on diabetic rat.</strong> Glutathione = 285.58-2.59X1-3.10X2– 2.216X3+0.029X1X2 +0.027X12+0.024X2X2 <br> <strong>Figure 5: Response surface plot of MDA against exposure time and concentration of </strong><em><strong>M. oleifera</strong></em><strong> extract administered on the animal models. </strong> MDA =11.58+0.060X1+ 0.0627X2+0.002x3+0.00095X1X2 – 0.00051X12-0.00067X22+0.00023X32 <br> <strong>Figure 6:</strong> <strong>Response surface plot of kidney weight against exposure time and concentration of </strong><em><strong>M. oleifera</strong></em><strong> extract administered on the animal models. </strong> SOD =138.864+0.88X1+1.563X2+1.069X3 -0.13X22 <br> <strong>Figure 7: Response surface plot of weight of kidney against </strong> <strong>exposure and concentration of the test substance</strong> Wt. of kidney (g) = 0.521+0.00072X1+0.00072X2-0.0000105X3 <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.22232447
title: Concretionary cementation of a Scottish Middle Jurassic sandstone by hot, Paleocene fluids: a clumped isotope study

description: Sample details.
DOI: 10.6084/m9.figshare.22232447.v1
title: Concretionary cementation of a Scottish Middle Jurassic sandstone by hot, Paleocene fluids: a clumped isotope study

description: Sample details.
DOI: 10.5281/zenodo.7708184
title: The effect of GmCP8 on the activity of proteases.

description: This file contains data published as a Fig 5 in Scientific Reports 2022. 12:11737. There, one can find all necessary descriptions.https://doi.org/10.1038/s41598-022-15929-6 The data are available on request. The work was financed by National Science Centre, project number 2020/37/B/NZ6/00167
DOI: 10.3217/12ax0-3n170
title: CFD model for the combustion of sewage sludge powder

description: This upload is supplement to the publication:
"Computationally Inexpensive CFD Approach for the Combustion of Sewage Powder, Including the Consideration of Water Content and Limestone Additive Variations" [1]
Abstract from the publication: As a result of growing interest in the thermal treatment of sewage sludge with methods such as combustion, gasification or pyrolysis, and also in processes that aim to recover precious components such as phosphorus from this waste, a growing demand has been observed for Computational Fluid Dynamics (CFD) models that provide solutions rapidly and accurately for efficient application in research and development. This study was carried out to develop a computationally inexpensive modelling approach for the combustion of pulverized sewage sludge in entrained flow furnaces. Sewage sludge is a very volatile-rich fuel. Therefore, the Steady Diffusion Flamelet model (SFM), in combination with a validated skeletal reaction mechanism, was applied to consider the pulverized firing of sewage sludge. It was possible to represent the complex composition of volatiles emitted from the sludge particles by releasing surrogate fuels. In addition, the influence of limestone additive (calcination reaction) and varying water content (water–gas shift reaction) was investigated experimentally and modelled via CFD. The simulation results confirm that the surrogate fuel approach is valid and can be used to describe pulverized sewage sludge effectively. The temperature and species concentration results, including the influence of the additive and different levels of water content, were confirmed by experimental data, which is usually hard to obtain due to the tendency of PSS to form agglomerates in entrained flow combustion furnaces. The model yields plausible and experimentally validated results for the combustion of sewage sludge powder across a wide range of operating conditions. 
HOW TO USE THE ANSYS FLUENT MODEL
1) Read .cas.h5 file in FLUENT
2) Read the examplary pre-tabulated chemistry data (PDF_example) or create your own data using heptane42.che [2] and change boundary conditions accordingly
3) Run the calculation to obtain the solution data
 
Three meshes and the biot-number UDF are provided.
The settings file can be used to transfer settings to another case fast.
 
[1] B. Ortner et al. Computationally Inexpensive CFD Approach for the Combustion of Sewage Powder, Including the Consideration of Water Content and Limestone Additive Variations
Energies 2023, 16(4), 1798
[2] M. Bui-Pham, K.S. Comparison between Experimental Measurements and Numerical Calculations of the Structure of Heptane-Air 757
Diffusion Flames. Combustion Science and Technology 1991, 74, 293–310.
DOI: 10.6084/m9.figshare.22232437
title: Dataset_Treating Traumatic Memories_ A Comparative Study of the Effectiveness of EMDR and Constructed Awareness

description: This is the dataset for a study comparing EMDR and Constructed Awareness for treating traumatic memories
DOI: 10.6084/m9.figshare.22232443
title: tutorial

description: tutorial for the materials in the rar file
DOI: 10.6084/m9.figshare.22232443.v1
title: tutorial

description: tutorial for the materials in the rar file
DOI: 10.6084/m9.figshare.21982691.v1
title: Supplementary Material for: IL-37 Ameliorates Renal Fibrosis by Restoring CPT1A Mediated Fatty Acid Oxidation in Diabetic Kidney Disease

description: Introduction: Diabetic kidney disease (DKD) is a major source of chronic kidney disease (CKD) and end-stage renal disease (ESRD). The injury of glomerular in DKD is the primary focus, however proximal tubulopathy also is an indispensable factor in the progression of DKD. Interleukin-37 (IL-37), an anti-inflammatory cytokine of IL-1 family member, has been demonstrated to be associated with diabetes and its relative complications in recent years, but the effect of IL-37 on renal fibrosis in DKD is unclear. Methods: We established streptozotocin plus high fat diet (STZ/HFD)-induced DKD mice model with wild type (WT) or IL-37 transgenic (IL-37tg) mice. Masson and HE staining, immunostaining, and Western blot were used to observe renal fibrosis. In addition, RNA-sequencing was applied to explore the potential mechanisms of IL-37. In vitro, treatment of human proximal tubular (HK-2) cells with 30 mmol/L high glucose or 300 ng/ml recombinant IL-37 further elucidated the possible mechanism of IL-37 inhibition of DKD renal fibrosis. Results: In this work, we first verified the decreased expression of IL-37 in kidney of DKD patient and its correlation with clinical features of renal impairment. Moreover, IL-37 expression markedly attenuated proteinuria and renal fibrosis in DKD mice. Using RNA-sequencing, we found and confirmed a novel role of IL-37 in ameliorating fatty-acid oxidation (FAO) reduction of renal tubular epithelial cells both in vivo and in intro. In addition, further mechanistic studies showed that IL-37 alleviated the FAO reduction in HK-2 cells and renal fibrosis in DKD mice through upregulating carnitine palmitoyl-transferase 1A (CPT1A), an important catalyzer for FAO pathway. Conclusion: These data suggest that IL-37 attenuates renal fibrosis via regulating FAO in renal epithelial cells. Upregulation of IL-37 levels might be an effective therapeutic avenue for DKD.
DOI: 10.57745/wd5tps
title: DEMERSTEM_gps.tab

description: 1- First File: GPS data GPS logger embedded on artisanal fisheries boats. Boat are selected: • The gear used by the boat is in the sampling schema • Fishermen agreed The GPS stay on board during 15 days and then, an observer collects the data, charge the GPS logger and select next boat for following period All boats are registered from KAMSAR PORT Néné (longitude : -14.61, latitude : 10.65)
DOI: 10.57745/lrqcxr
title: Observed_FO.tab

description: This file contains a set of on board observation of fishing events
DOI: 10.5517/ccdc.csd.cc2bm5w1
title: CCDC 2163393: Experimental Crystal Structure Determination

description: Related Article: Wei-Ming Liao|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm5x2
title: CCDC 2163394: Experimental Crystal Structure Determination

description: Related Article: Wei-Ming Liao|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm5y3
title: CCDC 2163395: Experimental Crystal Structure Determination

description: Related Article: Wei-Ming Liao|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7539499
title: Data of global wetland carbon sinks

description: A database of the annual net ecosystem production (NEP) across global wetlands. In total, the database comprised 2,385 observations of annual NEP data across global wetlands, including 1,171, 952 and 262 observations from inland wetlands, peatlands and coastal wetlands, respectively.