cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10042139
title: Data for testing the assumption of fractal scaling in canopy surfaces across a diverse range of forest types

description: This is a collection of scripts and research data for a study on whether canopy surfaces follow fractal scaling laws across a diverse range of forest types. The article citation is: Fischer, F. J., & Jucker, T. (2024). No evidence for fractal scaling in canopy surfaces across a diverse range of forest types. Journal of Ecology, 112, 470–486. https://doi.org/10.1111/1365-2745.14244.

As data, we use canopy height models (CHMs) from 9 Australian research sites belonging to the Terrestrial Ecosystem Research Network (TERN). Their extent is 5 km x 5 km throughout. The underlying data can be found here: https://portal.tern.org.au/metadata/TERN/4ff0b4c9-cfa0-4d09-9520-b5402adc583f. Climatic data are extracted from the CHELSA climatology 1981-2010 (Brun et al. 2022: Global climate-related predictors at kilometer resolution for the past and future. Earth System Science Data, 14(12), 5573–5603. https://doi.org/10.5194/essd-14-5573-2022; Karger et al. 2017: Climatologies at high resolution for the earth's land surface areas. Scientific Data, 4(1), 170122. https://doi.org/10.1038/sdata.2017.122).

Each uploaded zip-file corresponds to a folder within a common repository. To reproduce our analysis, unpack into the same folder, upholding naming conventions and overall structure. Please note that some parts of the analysis require external software, e.g., GRASS GIS for the generation of simulated fractal surfaces. Paths need to be reset accordingly. 

rscripts.zip: 



the overall R script ("areforestsfractals_v3.R") used to generate fractal surfaces, calculate fractal statistics from CHMs and simulated surfaces, and to carry out the analysis

various summary statistics saved both as RData and csv files


TERN.zip:



data within this folder are ordered by site name

for each site, we include several CHMs, their corresponding DSMs (digital surface models) and DTMs (digital terrain models), as well as ancillary layers (pulse densities of laser scans)

for each site and each CHM/DSM, we also save the fractal scaling properties in separate csv files


TERNtrees.zip:



data within this folder are ordered by site name

for each site, we include manual delineations of the largest trees per 1 km x 1 km square (25 in total)

for each site, we include subplots of the CHM (200 m x 200 m) centred around the largest tree


climate.zip:



climate layers from CHELSA for precipitation and site water balance


terrain_fractal.zip:



simulated fractal surfaces, based on different generating algorithms

fractal scaling properties of simulated fractal surfaces in separate csv files


sites_coordinates.csv



lon/lat coordinates of each site
DOI: 10.6084/m9.figshare.25483111
title: Human antibody response to ebolavirus glycoprotein

description: Annotated and processed paired heavy and light chains of human antibodies described in "Systematic analysis of human antibody response to ebolavirus glycoprotein shows high prevalence of neutralizing public clonotypes" https://doi.org/10.1016/j.celrep.2023.112370All of the raw data from unpaired and 10x sequencing runs that went into this paper are in the SRA (SAMN30974360 – 30974387 and SAMN30974388 – 30974403).
DOI: 10.6084/m9.figshare.25483111.v1
title: Human antibody response to ebolavirus glycoprotein

description: Annotated and processed paired heavy and light chains of human antibodies described in "Systematic analysis of human antibody response to ebolavirus glycoprotein shows high prevalence of neutralizing public clonotypes" https://doi.org/10.1016/j.celrep.2023.112370All of the raw data from unpaired and 10x sequencing runs that went into this paper are in the SRA (SAMN30974360 – 30974387 and SAMN30974388 – 30974403).
DOI: 10.3886/t3kn-3q86
title: Ghana Power Compact - Line Bifurcation: Final Analysis Report
DOI: 10.3886/9fyy-cd10
title: Ghana Power Compact - Line Bifurcation: Final Analysis Report
DOI: 10.5281/zenodo.10882712
title: touit_purpuratus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10882713
title: touit_purpuratus_spades_01.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/7950260
title: Daily Public Opinion on Israel-Palestine War
DOI: 10.18434/mds2-3024
title: NIST Collaborative Research Cycle Data and Metrics Archive
DOI: 10.34740/kaggle/dsv/7950272
title: Public Opinion on Climate Change (Updated Daily)
DOI: 10.25824/redu/cml1q6
title: Almond proteins as Pickering emulsion stabilizers

description: This dataset contains the experimental data related to the work "Almond proteins as Pickering emulsion stabilizers".
DOI: 10.5281/zenodo.10728775
title: Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes

description: This repository contains several files describing the data discussed in Lindner et al's "Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes". 



"database.fna" = concatenation of the (draft or complete) genome sequences described in the paper (n=12,730 source associated prokaryotic genomes) which passed quality checks and are species-level representatives (i.e., dereplicated at 95% ANI).

"gdef.txt" = a manifest describing which sequences belong to which genomes.

"sources.txt" = a manifest describing which genomes belong to which sources.


The sources this database covers:




Source Category
Species-level genome count
Source-specificspecies-level genome count


Bird
56
40


Cat
86
6


Chicken
1314
887


Cow
39
15


Dog
139
56


Pig
2764
2035


Ruminant
740
714


Human
4484
3350


Wastewater
3108
3097




 

See publication for further details.
DOI: 10.5281/zenodo.10728776
title: Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes

description: This repository contains several files describing the data discussed in Lindner et al's "Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes". 



"database.fna" = concatenation of the (draft or complete) genome sequences described in the paper (n=12,730 source associated prokaryotic genomes) which passed quality checks and are species-level representatives (i.e., dereplicated at 95% ANI).

"gdef.txt" = a manifest describing which sequences belong to which genomes.

"sources.txt" = a manifest describing which genomes belong to which sources.


The sources this database covers:




Source Category
Species-level genome count
Source-specificspecies-level genome count


Bird
56
40


Cat
86
6


Chicken
1314
887


Cow
39
15


Dog
139
56


Pig
2764
2035


Ruminant
740
714


Human
4484
3350


Wastewater
3108
3097




 

See publication for further details.
DOI: 10.5281/zenodo.10864204
title: H01 synapse ground truth

description: Synapse ground truth used for the H01 study.

Ground truth used to train a network for synapse identification (see associated paper for details) ares contained in the six Synapse_GT_6_subvolumes.zip

Ground truth used for excitatory vs inhibitory classification of identified synapses (see associated paper for details) is contained in the files ei_gt_from_2945_synapses_from_104_proofread_neurons.csv and ei_gt_from_2367_verified_connections.csv
DOI: 10.5281/zenodo.10864205
title: H01 synapse ground truth

description: Synapse ground truth used for the H01 study.

Ground truth used to train a network for synapse identification (see associated paper for details) ares contained in the six Synapse_GT_6_subvolumes.zip

Ground truth used for excitatory vs inhibitory classification of identified synapses (see associated paper for details) is contained in the files ei_gt_from_2945_synapses_from_104_proofread_neurons.csv and ei_gt_from_2367_verified_connections.csv
DOI: 10.34740/kaggle/dsv/7950331
title: Balochi Language to English Translation Dataset
DOI: 10.25925/20240215
title: Multi-laboratory compilation of atmospheric carbon dioxide data for the years 2023-2024; obspack_co2_1_NRT_v9.2_2024-03-25

description: This product is constructed using the Observation Package (ObsPack) framework [Masarie et al., 2014; www.earth-syst-sci-data.net/6/375/2014/]. The framework is designed to bring together atmospheric greenhouse gas (GHG) observations from a variety of sampling platforms, prepare them with specific applications in mind, and package and distribute them in a self-consistent and well-documented product. ObsPack products are intended to support GHG budget studies and represent a new generation of cooperative value-added GHG data products.
DOI: 10.5281/zenodo.10882840
title: vireo_bellii_spades_01.fasta

description: .
DOI: 10.5281/zenodo.10882841
title: vireo_bellii_spades_01.fasta

description: .
DOI: 10.18742/25443721
title: Exploring context for implementation of inclusive education for children with developmental disabilities in mainstream primary schools in Ethiopia

description: A large gap in provision of services for children with developmental disabilities has been identified in Ethiopia, especially in the education system. Including children with disabilities in mainstream schools is encouraged by policies, but progress in this direction has been limited. This study aimed to explore stakeholders’ perspectives on contextual factors relevant for inclusive education for children with developmental disabilities in mainstream schools in Addis Ababa, Ethiopia. Data were collected through semi-structured interviews with 39 local stakeholders, comprising caregivers of children with developmental disabilities, school teachers and principals/managers, non-governmental organisation representatives, government officials, clinicians and academics/consultants. We used template analysis to code the data and map them onto domains of the Context and Setting dimensions of the <i>Context and Implementation of Complex Interventions</i> framework (Pfadenhauer et al., 2017). Stakeholders discussed frameworks in the Legal and Ethical context endorsing the right of all children to education. However, they reported multiple reasons why children with developmental disabilities in Addis Ababa have limited access to education, either in special or mainstream schools. First, individual features, such as gender and support needs, discussed in the Epidemiological context, may affect the likelihood of a child with developmental disabilities to be accepted in school. Transportation challenges are a key barrier in the Geographical context. Socio-economic and Socio-cultural contexts present barriers at the levels of the nation, school and family, mostly related to limited services and material and financial resources and limited awareness of developmental disabilities. Stakeholders believe the currently limited but growing commitment in the Political context can support progress towards the removal of these barriers. Our findings can form the basis for development of an implementation plan that addresses such barriers and capitalises on existing facilitators.
DOI: 10.18742/25443721.v1
title: Exploring context for implementation of inclusive education for children with developmental disabilities in mainstream primary schools in Ethiopia

description: A large gap in provision of services for children with developmental disabilities has been identified in Ethiopia, especially in the education system. Including children with disabilities in mainstream schools is encouraged by policies, but progress in this direction has been limited. This study aimed to explore stakeholders’ perspectives on contextual factors relevant for inclusive education for children with developmental disabilities in mainstream schools in Addis Ababa, Ethiopia. Data were collected through semi-structured interviews with 39 local stakeholders, comprising caregivers of children with developmental disabilities, school teachers and principals/managers, non-governmental organisation representatives, government officials, clinicians and academics/consultants. We used template analysis to code the data and map them onto domains of the Context and Setting dimensions of the <i>Context and Implementation of Complex Interventions</i> framework (Pfadenhauer et al., 2017). Stakeholders discussed frameworks in the Legal and Ethical context endorsing the right of all children to education. However, they reported multiple reasons why children with developmental disabilities in Addis Ababa have limited access to education, either in special or mainstream schools. First, individual features, such as gender and support needs, discussed in the Epidemiological context, may affect the likelihood of a child with developmental disabilities to be accepted in school. Transportation challenges are a key barrier in the Geographical context. Socio-economic and Socio-cultural contexts present barriers at the levels of the nation, school and family, mostly related to limited services and material and financial resources and limited awareness of developmental disabilities. Stakeholders believe the currently limited but growing commitment in the Political context can support progress towards the removal of these barriers. Our findings can form the basis for development of an implementation plan that addresses such barriers and capitalises on existing facilitators.
DOI: 10.25925/20240229
title: Multi-laboratory compilation of atmospheric carbon dioxide data for the year 2023-2024; obspack_ch4_1_NRT_v6.1_2024-03-26

description: This product is constructed using the Observation Package (ObsPack) framework [Masarie et al., 2014; www.earth-syst-sci-data.net/6/375/2014/]. The framework is designed to bring together atmospheric greenhouse gas (GHG) observations from a variety of sampling platforms, prepare them with specific applications in mind, and package and distribute them in a self-consistent and well-documented product. ObsPack products are intended to support GHG budget studies and represent a new generation of cooperative value-added GHG data products.
DOI: 10.6073/pasta/316b68dd254e353e1acfb16d92bac2dc
title: 2015 Drought soil biogeochemistry and greenhouse gas emissions study at El Verde

description: We report the effects of the severe 2015 Caribbean drought on soil moisture, oxygen (O2), temperature, phosphorus (P), iron (Fe), pH, and GHG emissions (CO2 and CH4) across a catena sensor array field outside of El Verde Research Station, Luquillo LTER, Puerto Rico.

Seven sensors of each type were installed at 12 cm depth along a ridge to valley catena; the entire catena transect was replicated five times for a total of 105 sensors. Within the sensor field we also installed nine automated gas flux chambers randomly located in each topographic zone (ridge, slope and valley). Soil carbon and nitrogen, extractable phosphorus (P) pools, iron (Fe) species, and pH were sampled before and during the drought as indicators of biogeochemical conditions.
DOI: 10.21223/nghpms/cxjpar
title: 01_data_LateBlightSeverity_Elbaz2000.tab

description: :unav
DOI: 10.21223/nghpms/sbqgoe
title: 02_LateBlight_Evaluation_Elbaz2000.xls

description: :unav
DOI: 10.21223/nghpms/lkjdcr
title: 03_DailyWeatherData_Elbaz2000.tab

description: :unav
DOI: 10.21223/nghpms/3eb3gt
title: 04_HourlyWeatherData_Elbaz2000.tab

description: :unav
DOI: 10.21223/nghpms/xnkbew
title: 01_data_LateBlightSeverity_Nir-Eliyahu2000.tab

description: :unav
DOI: 10.21223/nghpms/adpyje
title: 03_DailyWeatherData_Sde-Varburg2000.tab

description: :unav
DOI: 10.21223/nghpms/ydpa0f
title: 01_data_LateBlightSeverity_Sde-Varburg2000.tab

description: :unav
DOI: 10.21223/nghpms/rwwvjn
title: 04_HourlyWeatherData_Sde-Varburg2000.tab

description: :unav
DOI: 10.21223/nghpms/bgcqh8
title: 03_DailyWeatherData_Nir-Eliyahu2000.tab

description: :unav
DOI: 10.21223/nghpms/w7hnkg
title: 02_LateBlight_Evaluation_Nir-Eliyahu2000.xls

description: :unav
DOI: 10.21223/nghpms/29qzps
title: 04_HourlyWeatherData_Nir-Eliyahu2000.tab

description: :unav
DOI: 10.21223/nghpms
title: Dataset for: Qualification of a Plant Disease Simulation Model: Performance of the LATEBLIGHT Model Across a Broad Range of Environments. Israel 2000

description: The concept of model qualification, i.e., discovering the domain over which a validated model may be properly used, was illustrated with LATEBLIGHT, a mathematical model that simulates the effect of weather, host growth and resistance, and fungicide use on asexual development and growth of Phytophthora infestans on potato foliage. Late blight epidemics from Ecuador, Mexico, Israel, and the United States involving 13 potato cultivars (32 epidemics in total) were compared with model predictions using graphical and statistical tests. Fungicides were not applied in any of the epidemics. For the simulations, a host resistance level was assigned to each cultivar based on general categories reported by local investigators. For eight cultivars, the model predictions fit the observed data. For four cultivars, the model predictions overestimated disease, likely due to inaccurate estimates of host resistance. Model predictions were inconsistent for one cultivar and for one location. It was concluded that the domain of applicability of LATEBLIGHT can be extended from the range of conditions in Peru for which it has been previously validated to those observed in this study. A sensitivity analysis showed that, within the range of values observed empirically, LATEBLIGHT is more sensitive to changes in variables related to initial inoculum and to weather than to changes in variables relating to host resistance.
DOI: 10.21223/nghpms/mlt6rc
title: 02_LateBlight_Evaluation_Sde-Varburg2000.xls

description: :unav
DOI: 10.25919/3nag-bx35
title: Parkes observations for project P1219 semester 2023OCTS_27

description: The magnetic field potentially regulates the process of star formation and the evolution of molecular clouds. It is inherently difficult to measure interstellar magnetic field strengths, with the measurement of Zeeman splitting a unique method to estimate the magnetic field strength along the line of sight directly. Despite the detection of Zeeman splitting in other mediums, there are as yet no Zeeman detections against compact background sources in quiescent molecular clouds or the cold neutral medium. Pulsars with extremely small solid angles and relatively high transverse velocities are ideal background sources to study the magnetic field in molecular clouds, providing a distinct signal to measure splitting against. There are four pulsars with OH absorption detections, namely PSR B1849+00, B1641-45, B1718-35, and B1749-28. We propose to utilize these four pulsars to explore the properties of the magnetic field and its variations within molecular clouds through both the Zeeman splitting of OH absorption and rotation measure estimations, between epochs. If a detection is confirmed, it will open a new window on the hard-to-measure magnetic fields in molecular clouds, independent of interpretation, thus shedding light on the physics of star formation and the interstellar medium.
DOI: 10.25919/80n8-qb71
title: Parkes observations for project P1176 semester 2023OCTS_05

description: Pulsars and their winds are among nature's most powerful particle accelerators, producing particles with energies up to a few PeVatrons. In addition to high-energy radiation from the magnetosphere, the rotational energy of a neutron star is carried away in the form of magnetized ultra-relativistic pulsar winds. Investigation of pulsar wind nebula (PWN) offers an excellent chance to determine the interaction details of relativistic flows with their surroundings that may never be possible in other classes of source. Our recent analyses of ASKAP observations of Galactic Plane uncovered previously known X-ray PWN CXOU J163802.6-471358 (nicknamed as Potoroo). Recently, we have successfully detected a pulsar candidate associated with Potoroo with Parkes telescope. It is detected at 3 GHz with a dispersion measure of DM = 1553 pc cm-3 and a rotation period of 65.74 ms. Here we propose to continue timing observations for this young pulsar with the Parkes Ultra-Wideband Low (UWL) receiver. Through pulsar timing, we will be able to obtain precise measurements of the pulsar position and proper motions, and the spin-down of the pulsar which enables us to independently estimate the age of the system. Long-term timing will also enable us to measure the parallax of the system and search for pulsation at high energies (i.e. X-ray and gamma-ray)
DOI: 10.25919/gf1g-xk74
title: Parkes observations for project P1189 semester 2023OCTS_04

description: The solar wind and space weather events have a crucial influence on the solar system, and can present a hazard to space and Earth-based technologies. Understanding the origins of the solar wind and space weather is therefore crucial, so that we can better understand how these events are driven, and to improve space weather prediction efforts. In particular, magnetic structures such as coronal holes, helmet streamers, and prominences in the lower corona are thought to be crucial drivers of the winds and coronal mass ejections (CMEs). However, there are very few observational constraints on the solar wind and space weather events at low solar altitudes (&lt; 20 solar radii), as this region is inaccessible to space probes. In this proposal, we seek to monitor a set of pulsars as they pass within 5.7 degrees of the Sun. We will use the UWL receiver on the Parkes Radio Telescope to make precision measurements of the dispersive group delay and Faraday rotation of the pulses. This will enable us to probe the densities and magnetic fields of the coronal structures driving the wind, and probe $6 \pm 4$ CMEs as they pass by the pulsars serendipitously. We will tie this information together with complementary efforts to probe the solar wind via interplanetary scintillation, constraints from space probes, and simulations. This will give us an exciting opportunity to form a holistic picture of the solar wind and space weather.
DOI: 10.5281/zenodo.10601302
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10783239
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10804294
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10579828
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10609039
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10617941
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10638865
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10677994
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10579827
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10668699
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10689887
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10815645
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10882837
title: materiales para el curso de vision por computador de 2023/2024
DOI: 10.5281/zenodo.10882835
title: Code produced by the study "Advantages of assimilating multi-spectral satellite retrievals of atmospheric composition: A demonstration using MOPITT carbon monoxide products".

description: This is the code used in the manuscript entitled "Advantages of assimilating multi-spectral satellite retrievals of atmospheric composition: A demonstration using MOPITT carbon monoxide products".
DOI: 10.5281/zenodo.10882836
title: Code produced by the study "Advantages of assimilating multi-spectral satellite retrievals of atmospheric composition: A demonstration using MOPITT carbon monoxide products".

description: This is the code used in the manuscript entitled "Advantages of assimilating multi-spectral satellite retrievals of atmospheric composition: A demonstration using MOPITT carbon monoxide products".