cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.mw6m905z8
title: Patterns of volatile diversity yield insights into the genetics and biochemistry of the date palm fruit volatilome

description: Volatile organic compounds are key components of the fruit metabolome that
 contribute to traits such as aroma and taste. Here we report on the
 diversity of 90 flavor-related fruit traits in date palms (Phoenix
 dactylifera L.) including 80 volatile organic compounds, which
 collectively represent the fruit volatilome, as well as 6 organic acids,
 and 4 sugars in tree-ripened fruits. We characterize these traits in 148
 date palms representing 135 varieties using headspace solid-phase
 microextraction gas chromatography. We discovered new volatile compounds
 unknown in date palm including 2-methoxy-4-vinylphenol, an attractant of
 the red palm weevil (Rhynchophorus ferrugineus Olivier), a key pest that
 threatens the date palm crop. Associations between volatile composition
 and sugar and moisture content suggest that differences among fruits in
 these traits may be characterized by system-wide differences in fruit
 metabolism. Correlations between volatiles indicate medium chain and long
 chain fatty acid ester volatiles are regulated independently, possibly
 reflecting differences in the biochemistry of fatty acid precursors.
 Finally, we took advantage of date palm clones in our analysis to estimate
 broad-sense heritabilities of volatiles and demonstrate that at least some
 of volatile diversity has a genetic basis.
description: Details about the datasets can be found in the accompanying
 README and Flowers et al. (2022).
description: Details about the datasets can be found in the accompanying
 README and Flowers et al. (2022).
DOI: 10.25505/fiz.icsd.cc2qfkyp
title: CSD 2515493: Experimental Crystal Structure Determination

description: Related Article: Vidyanshu Mishra, Jinseong Kim, Jong-Hoon Lim, Manya Rishi, Joon Jang, Abishek K. Iyer|2026|Chem.Mater.|||doi:10.1021/acs.chemmater.5c02904
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.69p8cz93r
title: American Beaver: GPS and VHF tag data from resident and translocated beavers on the Price and San Rafael Rivers, Utah

description: Wildlife translocations can dramatically alter animal movement behavior.
 Thus, identifying common movement patterns post-translocation can aid in
 setting expectations and anticipating animal behavior in subsequent
 efforts. American and Eurasian beavers (Castor canadensis; C. fiber) are
 frequently translocated for reintroduction efforts, to mitigate
 human-wildlife conflict, and for use as an ecosystem restoration tool.
 However, little is known about movement behavior of translocated beavers
 post-release, especially in desert rivers where resources are patchy and
 dynamic. We identified space-use patterns to develop an expectation
 framework of beaver movement behavior for future beaver-assisted
 restoration efforts. We captured, tagged, translocated, and monitored 41
 nuisance American beavers in desert river restoration sites on the Price
 and San Rafael Rivers, Utah, USA, and compared their space use to 16
 resident beavers. We tracked beavers 2-7 times per week from May through
 October in 2019 and 2020 via GPS locations and radio-telemetry, and from
 May 2019 through March 2021 via passive integrated antennae installed in
 the rivers. Resident adult beavers were detected at a mean maximum
 distance of 0.86 ± 0.21 river kilometers (km; ±1 SE), while resident
 subadult (11.00 ± 4.24 km), translocated adult (19.69 ± 3.76 km), and
 translocated subadult (21.09 ± 5.54 km) beavers were detected at
 substantially greater maximum distances. Based on coarse-scale movement
 models, translocated and resident subadult beavers moved substantially
 farther from release sites and faster than resident adult beavers up to
 six months post-release. In contrast, based on fine-scale, short-term
 movement models over 5-minute intervals, we observed similar median
 distance traveled between resident adult and translocated beavers. Our
 findings suggest day-to-day activities such as foraging and resting were
 largely unaltered by translocation, but translocated beavers exhibited
 coarse-scale movement behavior most similar to dispersal by resident
 subadults. Coarse-scale movement rates decreased with time since release,
 suggesting that translocated beavers adjusted to the novel environment
 over time and eventually settled into a home range similar to resident
 adult beavers. This is the first study comparing resident and translocated
 beaver movement behavior in the same system. Understanding translocated
 beaver movement behavior in response to a novel desert system can help
 future beaver-assisted restoration efforts to identify appropriate release
 sites and strategies.
description: VHF and GPS tags were placed on translocated and resident adult
 and subadult beavers.
description: Please contact the authors to explain anything you need.
DOI: 10.5061/dryad.2jm63xsr0
title: Tropicalization of temperate reef fish communities facilitated by urchin grazing and diversity of thermal affinities

description: Aim: Global declines in structurally complex habitats are reshaping both
 land and seascapes in directions that affect biological communities’
 responses to warming. Here, we test whether widespread loss of kelp
 habitats through sea urchin overgrazing systematically changes sensitivity
 of fish communities to warming. Location: Global temperate latitudes Time
 period: Modern Major taxa studied: Fishes Methods: Community thermal
 affinity shifts related to habitat were assessed by simulating and
 comparing fish communities from 2,271 surveys across 15 ecoregions.
 Results: We find that fishes in kelp and urchin barrens differ in realized
 thermal affinities and range sizes, but only in regions where species
 pools have high variability in species’ thermal affinities. Barrens on
 warm-temperate reefs host relatively more warm-affinity fish species than
 neighbouring kelp beds, highlighting acceleration of tropicalization
 processes facilitated by urchin herbivory. By contrast, proportionally
 more cool-affinity fishes colonize barrens at high temperate latitudes,
 contributing to community lags with ocean warming in these regions. Main
 conclusions: Our findings implicate urchins as drivers of ecological
 change, in part by affecting biological resilience to warming.
description: Data used in this manuscript were collected through the Reef Life
 Survey program https://reeflifesurvey.com/.
DOI: 10.5061/dryad.7h44j0zvq
title: Directional hydrophone clusters reveal evasive responses of small cetaceans to disturbance at offshore windfarms

description: Mitigation measures to disperse marine mammals prior to pile-driving
 include acoustic deterrent devices and piling soft starts, but their
 efficacy remains uncertain. We developed a self-contained portable
 hydrophone cluster to detect small cetacean movements. Using an array of
 clusters within 10 km of foundation pile installations, we tested the
 hypothesis that harbour porpoises (Phocoena phocoena) respond to
 mitigation measures at offshore windfarm sites by moving away. During
 baseline periods, porpoise movements were evenly distributed in all
 directions. In contrast, animals showed significant directional movement
 away from sound sources during acoustic deterrent device use and piling
 soft starts. We demonstrate that porpoises respond to measures aimed to
 mitigate the most severe impacts of construction at offshore windfarms by
 swimming directly away from these sound sources. Portable directional
 hydrophone clusters now provide opportunities to characterise responses to
 disturbance sources across a broad suite of habitats and contexts.
description: Harbour porpoise clicks and noise levels during mitigation
 activities and baseline periods were recorded using tetrahedral clusters
 of hydrophones connected to four-channel underwater acoustic recorders
 (SoundTrap ST4300HF, Ocean Instruments NZ) deployed on the seabed.
 Recordings on each hydrophone cluster were processed in open-source
 PAMGuard software to determine received noise levels and classify harbour
 porpoise clicks. Data on the timing of construction
 activities were provided by the windfarm developer (Moray Offshore Wind
 Farm (East) Ltd).
description: A full description of the data identifiers, R code and the data
 files required to repeat each analysis is provided in the text file:
 README_Graham_MEOW_cMMMP_Data_Packages.txt Data and
 code consist of the following 13 files/file packages. 
 
 Graham_MEOW_cMMMP_construction_noise_data_2022-07-19.txt Graham_MEOW_cMMMP_construction_activity_data_2022-01-06.txt Graham_MEOW_cMMMP_directional_hydrophone_cluster_locations_and_distances_to_construction_data_2022-01-06.txt Graham_MEOW_cMMMP_R_code_to characterize_construction_noise_levels_2022-07-19.R Graham_MEOW_cMMMP_harbour_porpoise_click_data_2022-01-06.txt Graham_MEOW_cMMMP_R_code_to_process_and_analyse_harbour_porpoise_click_data_2022-07-19.R Depl1062.zip Depl1064.zip Depl1065.zip Depl1066.zip Depl1067.zip Depl1068.zip Depl1069.zip
DOI: 10.5061/dryad.d7wm37q2x
title: Data representing logical computations along four stages in the brain

description: A key challenge in neuroimaging remains to understand where, when and now
 particularly how human brain networks compute over sensory inputs to
 achieve behavior. To study such dynamic algorithms from mass neural
 signals, we recorded the magnetoencephalographic (MEG) activity of
 participants who resolved the classic XOR, OR and AND functions as overt
 behavioral tasks (N = 10 participants/task, N-of-1 replications). Each
 function requires a different computation over the same inputs to produce
 the task- specific behavioral outputs. In each task, we found that
 source-localized MEG activity progresses through four computational stages
 identified within individual participants: (1) initial contra-lateral
 representation of each visual input in occipital cortex, (2) a joint
 linearly combined representation of both inputs in midline occipital
 cortex and right fusiform gyrus, followed by (3) nonlinear task-dependent
 input integration in temporal-parietal cortex and finally (4) behavioral
 response representation in post-central gyrus. We demonstrate the specific
 dynamics of each computation at the level of individual sources. The
 spatio-temporal patterns of the first two computations are similar across
 the three tasks; the last two computations are task specific. Our results
 therefore reveal where, when and how dynamic network algorithms perform
 different computations over the same inputs to produce different
 behaviors.
description: This dataset includes source data and the related manuscript
 codes involved in the research Different Computations over the Same Inputs
 Produce Selective Behavior in Algorithmic Brain Networks published at
 eLife. Specifically, we provide all analyzed data reported in the paper
 including: Figure 1&3 related – Source Data in
 FigureSource1.mat. 1_DistancePattern.m
 2_LinearRep.m 3_NonLinRep.m
 Figure 2 related – Source Data in FigureSource2.mat
 4_DynaCoord.m
DOI: 10.34740/kaggle/dsv/14648370
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.2fqz612qp
title: Increased interannual precipitation variability enhances the carbon sink in a semiarid grassland

description: 1. The amplifying interannual precipitation variability has been observed
 globally and is projected to intensify under climate change scenarios.
 However, its impacts on terrestrial vegetation and carbon (C) sink have
 not been well investigated. 2. As part of a field manipulative experiment
 with three precipitation variabilities (20%, 40%, and 60%) in a semiarid
 grassland, this study was conducted to examine the responses of ecosystem
 C cycling to increased precipitation variability. 3. Across the 3
 experimental years from 2010 to 2012, amplified precipitation variability
 enhances gross primary productivity (GPP) and ecosystem respiration (ER)
 as both GPP and ER were more sensitive to above- than below-average
 precipitation. In addition, the larger responses of GPP than ER to
 precipitation variability resulted in an enhancement of net ecosystem
 productivity (NEP), and the magnitudes of NEP increased with the
 increasing precipitation variability. More species with higher sensitivity
 to increased precipitation under wet condition and the insensitive
 response of root growth to decreased precipitation could largely be
 responsible for the above observations, which suggest that the semiarid
 grassland was more sensitive to wet treatment yet strongly resistant to
 drought. 4. Our results provide empirical evidence that intensified
 precipitation variability could stimulate grassland C sink. The findings
 revealed in this study could facilitate the mechanistic understanding and
 imply the potential positive feedback of climate variability-terrestrial C
 sink.
DOI: 10.5061/dryad.sqv9s4n5h
title: The raw data of large odorous frogs mate selection

description: In anurans, the complexity of courtship calls may effect female mate
 choice. The current study suggests that nonlinear phenomena (NLP)
 components can contribute to increasing complexity in courtship calls and
 attracting female attention. The results of a recent study showed that
 calls of large odorous frog (Odorrana graminea) contained NLP components.
 However, whether the nonlinear components of courtship calls in O.
 graminea improve male attractiveness remains unknown. We hypothesized that
 female O. graminea would prefer males producing calls with a higher
 proportion of NLP components (P-NLP-C). To test this hypothesis, we
 recorded the advertisement calls of 28 males and confirmed that the
 P-NLP-C was significantly positively related to body size. We also
 measured the body size of natural amplectant males and non-amplectant
 males in the field, and found that amplectant males had larger body sizes
 than non-amplectant males, and the results of two-choice amplexus
 experiments similarly revealed a female preference for males with larger
 body sizes. Additionally, phonotaxis experiments also revealed that
 females preferred male calls with a high P-NLP-C. The results suggest that
 a higher P-NLP-C in calls can enhance male attractiveness, and the P-NLP-C
 may provide key information about male body conditions for female O.
 graminea. Our study provides a new insight for better understanding the
 role of NLP in anuran mate selection.
DOI: 10.5061/dryad.6hdr7sr2k
title: Data from: The evolution of cognitive control in lemurs

description: Cognitive control, or executive function, is a key feature of human
 cognition, allowing individuals to plan, acquire new information, or adopt
 new strategies when the circumstances change. Yet it is unclear which
 factors promote the evolution of more sophisticated executive function
 abilities like those possessed by humans. Examining cognitive control in
 non-human primates, our closest relatives, can help to identify these
 evolutionary processes. Here we developed a novel battery to
 experimentally measure multiple aspects of cognitive control in primates:
 temporal discounting, motor inhibition, short-term memory, reversal
 learning, novelty responses, and persistence. We tested lemur species with
 targeted, independent variation in both ecological and social features
 (ruffed lemurs, Coquerel’s sifakas, ring-tailed lemurs and mongoose
 lemurs, N = 39 lemurs), and found that ecological rather than social
 characteristics best predicted patterns of cognitive control across these
 species. This highlights the importance of integrating cognitive data with
 species’ natural history to understand the origins of complex cognition.
description: See methods
 in the manuscript for all details.
description: Please see
 the key tabs in the files for all details on data usage
 information.
DOI: 10.5061/dryad.j3tx95xg4
title: Root penetration index 3, a major quantitative trait locus (QTL) associated with root system penetrability in Arabidopsis.

description: Soil mechanical impedance precludes root penetration, confining root
 system development to shallow soil horizons where mobile nutrients are
 scarce. Using a two-phase-agar system, we
 characterized Arabidopsis thaliana responses to low and
 high mechanical impedance at three root penetration stages. We found that
 seedlings whose roots fail to penetrate agar barriers show a significant
 reduction in leaf area, root length and elongation zone and an increment
 in root diameter, while those capable of penetrating show only minor
 morphological effects. Analyses using different auxin-responsive reporter
 lines, exogenous auxins and inhibitor treatments suggest
 that auxin responsiveness and PIN-mediated auxin distribution
 play an important role in regulating root  responses to
 mechanical impedance. The assessment of 21 Arabidopsis accessions
 revealed that primary root penetrability (PRP) varies widely among
 accessions. To search for quantitative trait loci (QTLs) associated to
 root system penetrability, we evaluated a recombinant inbred population
 (RIL) derived from Landsberg erecta (Ler-0, with a high PRP) and Shahdara
 (Sha, with a low PRP) accessions. QTL analysis revealed a major-effect QTL
 localized in chromosome 3 (q-RPI3), which accounted for 29.98% (LOD =
 8.82) of the total phenotypic variation. Employing an introgression line
 (IL-321), with a homozygous q-RPI3region from Sha in the Ler-0
 genetic background, we demonstrated that q-RPI3 plays a
 crucial role in root penetrability. This multiscale study revels new
 insights into root plasticity during the penetration process in hard agar
 layers, natural variation and genetic architecture behind primary root
 penetrability in Arabidopsis.
description: The materials and methods that
 support the data of this study are detailly described in Bello Bello et
 al., (2022).
DOI: 10.15468/dl.wscd37
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Russian Federation",
 "TaxonKey is Physalis philadelphica"
 ]
}

 The dataset includes 157 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003032-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.pg4f4qrrd
title: Data from: Functionally diverse tree stands reduce herbaceous diversity and productivity via canopy packing

description: 1. There is extensive experimental evidence for the importance of
 biodiversity in sustaining ecosystem functioning. However, such
 experiments typically prevent immigration by continuously removing
 non-target species, thereby questioning the generality of these findings
 to real-world ecosystems. This is particularly true in forest ecosystems
 where understorey herbaceous species are key biodiversity components but
 are usually weeded in tree diversity experiments. Consequently, little is
 known about how tree diversity influences the natural dynamics of
 understorey herbaceous layers. 2. We conducted a three-year non-weeded
 tree diversity experiment composed of eight woody species differing widely
 in plant economic strategies. We examined how the functional diversity and
 identity of tree species mixtures drive the temporal dynamics of
 understorey productivity, functional diversity, and composition through
 canopy packing. 3. Tree mixtures with high functional diversity
 experienced increased canopy packing over time, thereby decreasing
 understorey productivity and diversity. Furthermore, herbaceous
 communities were dominated by species with functional traits typical of
 low-light conditions (lower community-weighted mean (CWM) of maximum plant
 height, but larger CWM of specific leaf area) in response to increased
 canopy packing. 4. Our results provide mechanistic insights into
 the role of tree functional diversity in shaping the dynamics of
 biomass, functional diversity, and composition of the understorey
 herbaceous layer during the early successional period. It is
 expected that the effects of tree functional diversity would also be
 relevant over time due to the increasing usage of canopy
 space. This study highlights the significance of natural
 community processes in determining the effects of tree diversity on the
 temporal dynamics of previously neglected ecosystem structures and
 functioning.
description: The dataset includes the measured data from a three-year
 non-weeded tree diversity experiment, composed of eight tree species that
 differed significantly in economic strategies and covering 17 scenarios of
 tree species compositions in subtropical China. The herbaceous layer
 survey and tree crown measurement were conducted every year from 2018 to
 2020.
description: For additional information, please email Liting Zheng or Enrong
 Yan (ltzheng@stu.ecnu.edu.cn, eryan@des.ecnu.edu.cn).
DOI: 10.7291/d1b963
title: Soil chemistry and dry season intensity, Panama Canal Area

description: Woody plant species were surveyed at 72 locations near the Panama Canal,
 spanning geological formations and a rainfall gradient. Soil chemistry,
 and dry season intensity at all the sites. Response of tree species to
 environmental gradients was estimated. The soil and climate data are
 provided in a single table here. Tree distributions are published at
 Condit et al. (2013a), including a data archive in Condit et al. (2013b).
 Note that the PNAS article incorrectly cites the data archive; the link
 below is correct.
description: The README file includes
 descriptions of columns in the data table. Details on methods for soil
 chemistry are given in references listed below. The Condit et al. (2013a)
 paper in PNAS has an accompanying data archive (Condit et al. 2013b),
 referred to below as PNAS archive.
description: Data are in a tab-delimited
 ascii file. There are 77 locations with latitude, longitude, and elevation
 given. See README file. References Condit, R., B. M. J. Engelbrecht, D.
 Pino, R. Perez, and B. L. Turner. 2013a. Species distributions in response
 to individual soil nutrients and seasonal drought across a community of
 tropical trees. Proceedings of the National Academy of Sciences
 110:5064–5068. Condit, R.; Engelbrecht, B.; Pino,
 D.; Turner, B.; Pérez, R. 2013b. Panama Tree Distribution Database.
 https://repository.si.edu/handle/10088/19529. Mirabello, M. J., J. B. Yavitt, M.
 Garcia, K. E. Harms, B. L. Turner, and S. J. Wright. 2013. Soil phosphorus
 responses to chronic nutrient fertilisation and seasonal drought in a
 humid lowland forest, Panama. Soil Research 51:215. Turner, B. L., T. Brenes-Arguedas,
 and R. Condit. 2018. Pervasive phosphorus limitation of tree species but
 not communities in tropical forests. Nature 555:367–370. Turner, B. L., and S. Joseph Wright.
 2014. The response of microbial biomass and hydrolytic enzymes to a decade
 of nitrogen, phosphorus, and potassium addition in a lowland tropical rain
 forest. Biogeochemistry 117:115–130. Turner, B. L., J. B. Yavitt, K. E.
 Harms, M. N. Garcia, T. E. Romero, and S. J. Wright. 2013. Seasonal
 Changes and Treatment Effects on Soil Inorganic Nutrients Following a
 Decade of Fertilizer Addition in a Lowland Tropical Forest. Soil Science
 Society of America Journal 77:1357–1369. Turner, B. L., J. B. Yavitt, K. E.
 Harms, M. N. Garcia, and S. J. Wright. 2015. Seasonal changes in soil
 organic matter after a decade of nutrient addition in a lowland tropical
 forest. Biogeochemistry 123:221–235. Turner, B. L., P. Zalamea, R.
 Condit, K. Winter, S. J. Wright, and J. W. Dalling. 2017. No evidence that
 boron influences tree species distributions in lowland tropical forests of
 Panama. New Phytologist 214:108–119.