cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5084367
title: Data and code used in "Satellite magnetic data reveal interannual waves in Earth's core"

description: Eigen mode solutions and code to obtain them for the results presented in Satellite magnetic data reveal interannual waves in Earth's core. The package uses the freely available code Mire.jl. <strong>Prerequisites</strong> Installed python3 with matplotlib ≥v2.1, cmocean and cartopy. A working Julia ≥v1.7. <strong>Run</strong> In the project folder run <pre><code>julia --project=.</code></pre> <br> Then, from within the Julia REPL run <pre><code>]instantiate</code></pre> at first time, to install all dependencies. After that, to compute all plots, run <pre><code>using QGMCSat allfigs()</code></pre> They're automatically saved in the "figs" subfolder of the repository. If loading QGMCSat fails, due to a missing cartopy or cmocean in the python version. Run (within Julia)<br> <pre><code>ENV["PYTHON"] = "python" #this should point to the python version that has cartopy installed ]build PyCall</code></pre> <br> To calculate all data, run <pre><code>using QGMCSat calculate_data()</code></pre> This will take several hours/days depending on the machine (needs enough memory). Individual data can be accessed directly through the .jld2 files from Julia. You can check out the individual figure functions to get an idea where which data is stored. If there are any issues or questions, please don't hesitate to get in touch!
description: This work was supported by the French Centre National d'Etudes Spatiales, focused on the absolute scalar magnetometer instrument onboard of the Swarm mission of the European Space Agency (ESA). The contri- butions of N.G., D.J., and J.A. have also been funded by ESA in the framework of EO Science for Society, through Contract 4000127193/19/NL/IA (Swarm + 4D Deep Earth: Core). This project has received funding from the European Research Council under the European Union's Horizon 2020 research and in- novation programme (GRACEFUL Synergy Grant Agreement 855677). We thank two anonymous referees whose comments helped improve the quality of our manuscript. The staff of the geomagnetic observatories and INTERMAGNET are thanked for supplying high-quality observatory data.
DOI: 10.5281/zenodo.5084366
title: Data and code used in "Satellite magnetic data reveal interannual waves in Earth's core"

description: Eigen mode solutions and code to obtain them for the results presented in Satellite magnetic data reveal interannual waves in Earth's core. The package uses the freely available code Mire.jl. <strong>Prerequisites</strong> Installed python3 with matplotlib ≥v2.1, cmocean and cartopy. A working Julia ≥v1.7. <strong>Run</strong> In the project folder run <pre><code>julia --project=.</code></pre> <br> Then, from within the Julia REPL run <pre><code>]instantiate</code></pre> at first time, to install all dependencies. After that, to compute all plots, run <pre><code>using QGMCSat allfigs()</code></pre> They're automatically saved in the "figs" subfolder of the repository. If loading QGMCSat fails, due to a missing cartopy or cmocean in the python version. Run (within Julia)<br> <pre><code>ENV["PYTHON"] = "python" #this should point to the python version that has cartopy installed ]build PyCall</code></pre> <br> To calculate all data, run <pre><code>using QGMCSat calculate_data()</code></pre> This will take several hours/days depending on the machine (needs enough memory). Individual data can be accessed directly through the .jld2 files from Julia. You can check out the individual figure functions to get an idea where which data is stored. If there are any issues or questions, please don't hesitate to get in touch!
description: This work was supported by the French Centre National d'Etudes Spatiales, focused on the absolute scalar magnetometer instrument onboard of the Swarm mission of the European Space Agency (ESA). The contri- butions of N.G., D.J., and J.A. have also been funded by ESA in the framework of EO Science for Society, through Contract 4000127193/19/NL/IA (Swarm + 4D Deep Earth: Core). This project has received funding from the European Research Council under the European Union's Horizon 2020 research and in- novation programme (GRACEFUL Synergy Grant Agreement 855677). We thank two anonymous referees whose comments helped improve the quality of our manuscript. The staff of the geomagnetic observatories and INTERMAGNET are thanked for supplying high-quality observatory data.
DOI: 10.6084/m9.figshare.19251584
title: LuxBrand Actv

description: Has been coded to split into three groups (generation Y, X, Jones)
DOI: 10.6084/m9.figshare.19251584.v1
title: LuxBrand Actv

description: Has been coded to split into three groups (generation Y, X, Jones)
DOI: 10.5281/zenodo.6310084
title: Freshwater viral metagenome assembled genomes (vMAGs) used for vContact2 analysis in publication Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments

description: This dataset contains all freshwater viruses that were mined from publicly available data in an effort to provide biogeographical context to viral communities identified from the Columbia River. These two files include data from: 1) East River, CO (PRJNA579838) 2) A previous study from the Columbia River, WA (PRJNA375338) 3) Prairie Potholes, ND (PRJNA365086) 4) Amazon River (PRJNA237344) Manuscript title Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments
DOI: 10.5281/zenodo.6310083
title: Freshwater viral metagenome assembled genomes (vMAGs) used for vContact2 analysis in publication Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments

description: This dataset contains all freshwater viruses that were mined from publicly available data in an effort to provide biogeographical context to viral communities identified from the Columbia River. These two files include data from: 1) East River, CO (PRJNA579838) 2) A previous study from the Columbia River, WA (PRJNA375338) 3) Prairie Potholes, ND (PRJNA365086) 4) Amazon River (PRJNA237344) Manuscript title Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments
DOI: 10.5281/zenodo.6310254
title: Beyond depression and anxiety; a systematic review about the role of corticotropin-releasing hormone antagonists in diseases of the pelvic and abdominal organs-Worksheets

description: This file has several worksheets corresponding to the data used for the review with the same table as indicated in the file
DOI: 10.5281/zenodo.6310253
title: Beyond depression and anxiety; a systematic review about the role of corticotropin-releasing hormone antagonists in diseases of the pelvic and abdominal organs-Worksheets

description: This file has several worksheets corresponding to the data used for the review with the same table as indicated in the file
DOI: 10.5517/ccdc.csd.cc2973ym
title: CCDC 2122010: Experimental Crystal Structure Determination

description: Related Article: Yong You, Wataru Kanna, Hideaki Takano, Hiroki Hayashi, Satoshi Maeda, Tsuyoshi Mita|2017|J.Am.Chem.Soc.|139|2904|doi:10.1021/jacs.1c13032
DOI: 10.5517/ccdc.csd.cc2973zn
title: CCDC 2122011: Experimental Crystal Structure Determination

description: Related Article: Yong You, Wataru Kanna, Hideaki Takano, Hiroki Hayashi, Satoshi Maeda, Tsuyoshi Mita|2017|J.Am.Chem.Soc.|139|2904|doi:10.1021/jacs.1c13032
DOI: 10.5517/ccdc.csd.cc29740q
title: CCDC 2122012: Experimental Crystal Structure Determination

description: Related Article: Yong You, Wataru Kanna, Hideaki Takano, Hiroki Hayashi, Satoshi Maeda, Tsuyoshi Mita|2017|J.Am.Chem.Soc.|139|2904|doi:10.1021/jacs.1c13032
DOI: 10.6084/m9.figshare.19251602
title: HHF

description: lolhhf
DOI: 10.6084/m9.figshare.19251602.v1
title: HHF

description: lolhhf
DOI: 10.5281/zenodo.6307005
title: High-Throughput Screening of Tribological Properties of Monolayer Films using Molecular Dynamics and Machine Learning: Supplemental Repository

description: Supplemental repository for the "High-Throughput Screening of Tribological Properties of Monolayer Films using Molecular Dynamics and Machine Learning" article. Contains calculated tribological properties of dual-monolayer systems from Molecular Dynamics (MD) simulation and Machine Learning (ML).
DOI: 10.5281/zenodo.5097002
title: High-Throughput Screening of Tribological Properties of Monolayer Films using Molecular Dynamics and Machine Learning: Supplemental Repository

description: Supplemental repository for the "High-Throughput Screening of Tribological Properties of Monolayer Films using Molecular Dynamics and Machine Learning" article. Contains calculated tribological properties of dual-monolayer systems from Molecular Dynamics (MD) simulation and Machine Learning (ML).
DOI: 10.5281/zenodo.6309242
title: Salvia elegans SPAdes preassembly

description: .
DOI: 10.5281/zenodo.6309241
title: Salvia elegans SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.19251677
title: labeled_dataset_paper.csv

description: google play store reviews
DOI: 10.6084/m9.figshare.19251677.v1
title: labeled_dataset_paper.csv

description: google play store reviews
DOI: 10.25345/c5ks6j609
title: MassIVE MSV000088929 - GL(-)-LC-19M001 Lipidomica negativa cacao
title: Estudio lipidomico de licor de cacao mediante HPLC-QTOF-MS negativo
DOI: 10.23641/asha.19233504.v1
title: Simulation and confidence with infants (Clinard, 2022)

description: <b>Purpose: </b>The purpose of this study was to compare student knowledge and confidence, related to the assessment and management of oral feeding readiness in medically complex infants, following a written case study versus a high-fidelity human patient simulation (HPS).<b>Method: </b>A sequential, two-phase, embedded mixed methods design was conducted. Participants were two sequential cohorts of second-year speech-language pathology graduate students enrolled in a didactic Pediatric Dysphagia course. At the end of the course, students completed the same case scenario presented as a written case study (control group; <i>N</i> = 28) or as an HPS (experimental group; <i>N </i>= 24). Pre– and post–knowledge assessment results and self-assessments of confidence conducted at three time points were compared. <b>Results: </b>All students made gains in knowledge, regardless of intervention (written case study or HPS). Despite different baselines, the percent change in knowledge was significant with the control group improving 33% and the experimental group improving 76% from baseline. Students in the experimental group demonstrated significantly greater gains in confidence with skills enhanced by the hands-on, immersive experience of HPS. Qualitative analysis further identified factors contributing to increased confidence with all students reporting that experience significantly contributes to their confidence in their ability to treat patients.<b>Conclusions: </b>While knowledge outcomes were similar between the groups, the confidence that the experimental group gained through the hands-on experiences of HPS fosters student development as confident professionals in assessing feeding readiness and managing medically complex infants. Results support integration of simulation into the graduate curriculum to support student learning.<br><b>Supplemental Material S1. </b>Number of participants who responded correctly for each item on the Knowledge Assessment. <br>Clinard, E. S. (2022). Increasing student confidence with medically complex infants through simulation: A mixed methods investigation. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2021_AJSLP-21-00234
DOI: 10.23641/asha.19233504
title: Simulation and confidence with infants (Clinard, 2022)

description: <b>Purpose: </b>The purpose of this study was to compare student knowledge and confidence, related to the assessment and management of oral feeding readiness in medically complex infants, following a written case study versus a high-fidelity human patient simulation (HPS).<b>Method: </b>A sequential, two-phase, embedded mixed methods design was conducted. Participants were two sequential cohorts of second-year speech-language pathology graduate students enrolled in a didactic Pediatric Dysphagia course. At the end of the course, students completed the same case scenario presented as a written case study (control group; <i>N</i> = 28) or as an HPS (experimental group; <i>N </i>= 24). Pre– and post–knowledge assessment results and self-assessments of confidence conducted at three time points were compared. <b>Results: </b>All students made gains in knowledge, regardless of intervention (written case study or HPS). Despite different baselines, the percent change in knowledge was significant with the control group improving 33% and the experimental group improving 76% from baseline. Students in the experimental group demonstrated significantly greater gains in confidence with skills enhanced by the hands-on, immersive experience of HPS. Qualitative analysis further identified factors contributing to increased confidence with all students reporting that experience significantly contributes to their confidence in their ability to treat patients.<b>Conclusions: </b>While knowledge outcomes were similar between the groups, the confidence that the experimental group gained through the hands-on experiences of HPS fosters student development as confident professionals in assessing feeding readiness and managing medically complex infants. Results support integration of simulation into the graduate curriculum to support student learning.<br><b>Supplemental Material S1. </b>Number of participants who responded correctly for each item on the Knowledge Assessment. <br>Clinard, E. S. (2022). Increasing student confidence with medically complex infants through simulation: A mixed methods investigation. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2021_AJSLP-21-00234
DOI: 10.7931/5z6v-yc73
title: Hymenotorrendiella clelandii and related species - Suppl. Data
DOI: 10.23641/asha.19233516
title: Discourse and soc. comm. interventions in TBI (Lê et al., 2022)

description: <b>Purpose: </b>This study reviewed the current state of discourse and social communication interventions in traumatic brain injury (TBI) to provide clinically focused guidance about treatment efficacy, treatment approaches by TBI severity, treatment components, and treatment outcome measures.<b>Method: </b>Searches were conducted in five electronic databases and reference lists of topical articles for discourse or social communication interventions in TBI published between 2012 and 2021. Search terms reflected three concepts: TBI, treatment, and cognitive-communication. Studies were evaluated for methodological quality using rating scales specific to study design.<b>Results: </b>Seven hundred sixty-seven records were identified, culminating in 21 studies for qualitative synthesis. All approaches resulted in improvement posttreatment, but durability and strength of evidence varied. Five treatment components were identified as “essential” for fostering change. Discourse approaches were generally more effective in mild-to-moderate TBI, whereas social communication approaches were more effective in moderate-to-severe TBI. Communication outcome measures were generally more sensitive to change than measures of other domains of functioning.<b>Conclusions: </b>The evidence suggests that discourse and social communication treatments are promising for improving communication in TBI. Selection of treatment components and tailoring treatment to the individual are important clinical considerations. Use of at least two proximal outcome measures that evaluate the target behavior and extent of functional generalization may be advantageous. The field would benefit from additional, more rigorous treatment studies to provide a greater understanding of how best to treat cognitive-communicative impairments in people with TBI.<br><b>Supplemental Material S1. </b>Methodological quality rating scales.<br><b>Supplemental Material S2.</b> Outcomes categories and exemplars.<br>Lê, K., Coelho, C., & Fiszdon, J. (2022). Systematic review of discourse and social communication interventions in traumatic brain injury. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2021_AJSLP-21-00088
DOI: 10.23641/asha.19233516.v1
title: Discourse and soc. comm. interventions in TBI (Lê et al., 2022)

description: <b>Purpose: </b>This study reviewed the current state of discourse and social communication interventions in traumatic brain injury (TBI) to provide clinically focused guidance about treatment efficacy, treatment approaches by TBI severity, treatment components, and treatment outcome measures.<b>Method: </b>Searches were conducted in five electronic databases and reference lists of topical articles for discourse or social communication interventions in TBI published between 2012 and 2021. Search terms reflected three concepts: TBI, treatment, and cognitive-communication. Studies were evaluated for methodological quality using rating scales specific to study design.<b>Results: </b>Seven hundred sixty-seven records were identified, culminating in 21 studies for qualitative synthesis. All approaches resulted in improvement posttreatment, but durability and strength of evidence varied. Five treatment components were identified as “essential” for fostering change. Discourse approaches were generally more effective in mild-to-moderate TBI, whereas social communication approaches were more effective in moderate-to-severe TBI. Communication outcome measures were generally more sensitive to change than measures of other domains of functioning.<b>Conclusions: </b>The evidence suggests that discourse and social communication treatments are promising for improving communication in TBI. Selection of treatment components and tailoring treatment to the individual are important clinical considerations. Use of at least two proximal outcome measures that evaluate the target behavior and extent of functional generalization may be advantageous. The field would benefit from additional, more rigorous treatment studies to provide a greater understanding of how best to treat cognitive-communicative impairments in people with TBI.<br><b>Supplemental Material S1. </b>Methodological quality rating scales.<br><b>Supplemental Material S2.</b> Outcomes categories and exemplars.<br>Lê, K., Coelho, C., & Fiszdon, J. (2022). Systematic review of discourse and social communication interventions in traumatic brain injury. <i>American Journal of Speech-Language Pathology</i>. Advance online publication. https://doi.org/10.1044/2021_AJSLP-21-00088
DOI: 10.6084/m9.figshare.16624525
title: glycan array data and experimental summary

description: glycan array results and experimental details
DOI: 10.6084/m9.figshare.16624525.v1
title: glycan array data and experimental summary

description: glycan array results and experimental details
DOI: 10.6084/m9.figshare.16589840
title: glycan array

description: glycan array used in the Gildersleeve laboratory to test possible EatA binding.
DOI: 10.6084/m9.figshare.16589840.v1
title: glycan array

description: glycan array used in the Gildersleeve laboratory to test possible EatA binding.
DOI: 10.7303/syn27312989
title: Deletion of Abi3/Gngt2 influences age-progressive amyloid β and tau pathologies in distinctive ways
DOI: 10.25345/c5g44hs08
title: MassIVE MSV000088930 - Oncogenic deubiquitination controls tyrosine kinase signaling and therapy response in acute lymphoblastic leukemia
title: Dysregulation of kinase signaling pathways via mutations favors tumor cell survival and resistance to therapy and it is common in cancer. Here, we reveal a novel mechanism of post-translational regulation of kinase signaling and nuclear receptor activity via deubiquitination in acute leukemia. We observed that the ubiquitin specific protease 11 (USP11) is highly expressed in lymphoblastic leukemia and associates with poor prognosis in this disease. USP11 ablation inhibits leukemia growth in vitro and in vivo, sparing normal hematopoiesis and thymus development, suggesting that USP11 could be a therapeutic target in leukemia. USP11 forms a complex with USP7 to deubiquitinate the oncogenic lymphocyte cell-specific protein-tyrosine kinase (LCK). Deubiquitination of LCK controls its activity, thereby altering T cell receptor signaling. Impairment of LCK activity leads to increased expression of the glucocorticoid receptor transcript, culminating into transcriptional activation of pro-apoptotic target genes, and sensitizes cells to glucocorticoids in primary T cell leukemia patient samples. The transcriptional activation of pro-apoptotic target genes, such as BCL2L11, is orchestrated by the deubiquitinase activity and mediated via an increase in enhancer-promoter interaction intensity. Pharmacological inhibition of USP7 or genetic knockout of USP7 in combination treatment of glucocorticoid displayed improved anti-T-ALL efficacy in vivo. Our data unveil how dysregulated deubiquitination controls signaling pathways, leading to cancer cell survival and drug non-response, and suggest novel therapeutic combinations towards targeting leukemia.
DOI: 10.6084/m9.figshare.19251674
title: Tharsis Pyroclastic Record in Noctis Labyrinthus: a joint CaSSIS-HiRISE DTM Analysis

description: CaSSIS DTM for aeolian bedforms in Noctis Labyrinthus, Mars
DOI: 10.6084/m9.figshare.19251674.v1
title: Tharsis Pyroclastic Record in Noctis Labyrinthus: a joint CaSSIS-HiRISE DTM Analysis

description: CaSSIS DTM for aeolian bedforms in Noctis Labyrinthus, Mars
DOI: 10.5517/ccdc.csd.cc2b4ws5
title: CCDC 2149657: Experimental Crystal Structure Determination

description: Related Article: B.E. Kucera, V.G. Young, W.W. Brennessel, J.E. Ellis|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|148|doi:10.1107/S2053229622001255
DOI: 10.5517/ccdc.csd.cc2b4wt6
title: CCDC 2149658: Experimental Crystal Structure Determination

description: Related Article: B.E. Kucera, V.G. Young, W.W. Brennessel, J.E. Ellis|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|148|doi:10.1107/S2053229622001255
DOI: 10.5517/ccdc.csd.cc2b4wv7
title: CCDC 2149659: Experimental Crystal Structure Determination

description: Related Article: B.E. Kucera, V.G. Young, W.W. Brennessel, J.E. Ellis|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|148|doi:10.1107/S2053229622001255
DOI: 10.5517/ccdc.csd.cc2b4ww8
title: CCDC 2149660: Experimental Crystal Structure Determination

description: Related Article: B.E. Kucera, V.G. Young, W.W. Brennessel, J.E. Ellis|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|148|doi:10.1107/S2053229622001255
DOI: 10.5517/ccdc.csd.cc2b4wx9
title: CCDC 2149661: Experimental Crystal Structure Determination

description: Related Article: B.E. Kucera, V.G. Young, W.W. Brennessel, J.E. Ellis|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|148|doi:10.1107/S2053229622001255
DOI: 10.5517/ccdc.csd.cc25m061
title: CCDC 2014262: Experimental Crystal Structure Determination

description: Related Article: S. Suganya, K. Saravanan, B. Hemalatha, R. Jaganathan, P. Kumaradhas|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|181|doi:10.1107/S2053229622001280
DOI: 10.5517/ccdc.csd.cc2b5mlr
title: CCDC 2150364: Experimental Crystal Structure Determination

description: Related Article: G.L.N. Smith, R.W. Taylor|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|176|doi:10.1107/S2053229622001449
DOI: 10.5517/ccdc.csd.cc2b5mms
title: CCDC 2150365: Experimental Crystal Structure Determination

description: Related Article: G.L.N. Smith, R.W. Taylor|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|176|doi:10.1107/S2053229622001449
DOI: 10.5517/ccdc.csd.cc2b5mnt
title: CCDC 2150366: Experimental Crystal Structure Determination

description: Related Article: G.L.N. Smith, R.W. Taylor|2022|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|78|176|doi:10.1107/S2053229622001449