cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14278487.v1
title: Mechanized harvesting of 'Conilon' coffee clones

description: Abstract: The objective of this work was to evaluate the speed effect of a coffee harvester and its interaction with 'Conilon' coffee (Coffea canephora) clones on the mechanical harvesting efficiency. The experiment was installed in São Mateus, in the state of Espírito Santo, Brazil, in 2012, with 27 clones of early, intermediate, and late fruit ripening. The first harvest was performed after the plant cuttings at 0.5 m above the ground, in 2016, and the canopy renovation. The plants and the harvester were evaluated in 2018. The coffee harvester was tested at 0.6 and 0.8 km h-1. Measurements were performed for stripping and harvesting efficiencies, fruit loss on the ground, unstripped fruit, defoliation with manual and mechanized harvesting, fruit removal force, and fruit ripening degree. The tests with the coffee harvester indicated a technical feasibility of 88% average harvesting efficiency, and a 15% lower defoliation than the manual harvesting. The harvesting speed of 0.8 km h-1 results in higher stripping and harvesting efficiencies, in a lower percentage of loss on the ground, and in less unstripped fruit, regardless of the evaluated clones. Fruit removal force and ripening degree influence the stripping and harvesting efficiencies and the percentage of unstripped fruit of 'Conilon' coffee.
DOI: 10.6084/m9.figshare.23815533.v1
title: Transcriptome data of <i>Enkianthus serrulatus</i>

description: Transcriptome sequencing was performed on the Illumina NextSeq 500 platform (Illumina, San Diego, CA, USA) at Personal Biotechnology (Shanghai, China). Low-copy nuclear genes (23, 28, 61, 64, 72, 78, 80 and 93) were developed from transcriptome sequences of <i>E. serrulatus </i>in our research.
DOI: 10.6084/m9.figshare.25884901.v1
title: Genes and transcripts expression

description: The mechanisms underlying high-altitude hypoxia adaptation on the Qinghai-Tibet Plateau have been extensively studied, yet the role of alternative splicing in this process remains poorly understood. Yunnan’s vertical zoning with pig breeds distributed across varying elevations provides an excellent model for investigating hypoxic adaptation. Here, we examined three indigenous Yunnan pig breeds: Diannan small-ear pigs (DSE, 500 m), Baoshan pigs (BS, 1500 m), and Diqing Tibetan pigs (DT, 3200 m). Using PacBio Iso-Seq, we obtained comprehensive full-length transcriptomes from five tissues (heart, kidney, liver, lung, and spleen), identifying 51,774 transcripts, including 34,813 novel ones, and 74,843 Alternative Splicing (AS) events across 10,686 AS genes.
DOI: 10.6084/m9.figshare.7429559.v2
title: Increasing Your Research's Exposure on Figshare Using the FAIR Data Principles

description: The FAIR principles were published in 2016 in a Scientific Data article titled ‘FAIR Guiding Principles for scientific data management and stewardship’. These were developed to aid in the discovery and reuse of research data.<br>FAIR stands for Findable, Accessible, Interoperable, and Reusable. Data that meet these principles are more optimal for reuse and discoverability and in turn increase your research’s exposure.<br>Here’s how your data is more FAIR when it’s on Figshare.<br>Illustration by Jason McDermott of RedPenBlackPen.
DOI: 10.17632/jzy8zngkbg
title: HGM-4

description: Gesture recognition technology is rapidly growing in the recent years due to the demands of many application such as computer game and sport, human robot interaction, assistant systems, sign language interpretation and e-commerce. One of the most important of gesture recognition is hand-gesture recognition. For example, it can be used to control all devices (television, radio, air-condition, and doors) by just hand gestures for smart home application. The HGM-4 dataset is built for hand gesture recognition (the full dataset is available from: http://dx.doi.org/10.17632/jzy8zngkbg.2) which contains total 4,160 colour images (1280 × 700 pixels) of 26 hand gestures captured by four cameras at different position. The training and testing set are defined to create a benchmark framework for comparing the experimental results.
DOI: 10.6084/m9.figshare.29128409.v1
title: THE IN-DEPTH GROUNDED KNOWLEDGE OF THE INTERNET OF MEDICAL THINGS INFRASTRUCTURE, ESTABLISHED INFLUENTIAL IMPACT ROLE TOWARD CLOUD COMPUTING ON THE (IoMT)

description: The appraisal of e-health care system adoption with the in-depth grounded knowledge of the internet of medical things infrastructure, established influential impact role toward cloud computing on the (IoMT)in Federal Teaching Hospital, Nigeria, is the focus of this research. In writing this project, the researcher has raised the need for understanding cloud computing in the public health care system and to get information about what the government is doing by bringing information to their doorstep. A further attempt has been made to examine the vibrancy of the adoption, such as IoMT in tackling the problem facing the public health care sector, providing a scheme to eradicate the challenges, making it viable for the commodity that everyone can buy, including the stakeholder which adopts the use of the new shift. However, the research work will critically examine the content of the E-health system with the adoption of cloud computing, helping the IoMT to achieve the result, as it opines that it will serve as reference material for future researchers.<br>
DOI: 10.6084/m9.figshare.21196636.v1
title: Phasor data concentrator placement in phasor measurement unit networks considering communication channel uncertainty and failure

description: The rar files contains the Matlab code for optimal PMU placement for 14-bus system, the code for LODE computation using Markov model and Monte Carlo Simulation (MCS) techniques. The code for partitioning the system and finding the best PDC location regarding cost objective using Floyd's algorithm. Also, the Floyd algorithm on the 39-bus system is presented.
DOI: 10.6084/m9.figshare.22691374.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.28737725.v1
title: POI.7z

description: POI data
DOI: 10.6084/m9.figshare.9876125.v1
title: simulated data used in supplement for 70% sparsity

description: New simulated data used in the supplement for comparing model performance in a sparse setting
DOI: 10.6084/m9.figshare.21905424.v1
title: USMLE Pass/Fail Data.csv

description: This data set is from surveying students across the nation regarding the transition of the USMLE Step 1 exam to pass/fail.
DOI: 10.6084/m9.figshare.28782329.v1
title: Saless

description: describe about the saless
DOI: 10.6084/m9.figshare.4774753.v1
title: DNA matrix for "Phylogenetic reassessment of tribe Anemoneae (Ranunculaceae): non-monophyly of Anemone s.l. revealed by plastid datasets"

description: This DNA matrix is the paper entitled "Phylogenetic reassessment of tribe Anemoneae (Ranunculaceae): non-monophyly of Anemone s.l. revealed by plastid datasets", which will be published in PLoS One. This dataset includes seven DNA markers, nrITS, atpB-rbcL, matK, psbA-trnQ, rbcL, rpoB-trnC and rps16.
DOI: 10.6084/m9.figshare.19111229.v1
title: Soil heterogeneity tends to promote growth of naturalized aliens when competing with native plant communities

description: The files include the Rscript and data file for the statistical analyses of Wei & van Kleunen 2022 (Soil heterogeneity tends to promote growth of naturalized aliens when competing with native plant communities), Journal of Ecology.
DOI: 10.17632/k7zr6w5yjr
title: Data for: Effects of online retailers’ after delivery services on repurchase intention: An empirical analysis based on customers’ past experience and future confidence with the retailer

description: Raw data file in SPSS, collected for Effects of online retailers’ after delivery services on repurchase intention: An empirical analysis based on customers’ past experience and future confidence with the retailer
DOI: 10.17632/yhn288f2rc
title: Dataset: Magnetic fabrics of rhyolite ignimbrites reveal complex emplacement dynamics of pyroclastic density currents, an example from the Altenberg–Teplice Caldera, Bohemian Massif

description: This is an anisotropy of magnetic susceptibility dataset of a manuscript submitted to Bulletin of Volcanology (Magnetic fabrics of rhyolite ignimbrites reveal complex emplacement dynamics of pyroclastic density currents, an example from the Altenberg–Teplice Caldera, Bohemian Massif)
DOI: 10.26188/22670950.v1
title: ICBI 2023 abstracts corpus analysis

description: <strong>This is a collection of RDF formatted files containing analysis of abstracts accepted by the Fourth International Congress on Biological Invasions (Christcurch NZ, 2023). Concept occurences are extracted using the Biosecurity Thesaurus, available at Research Vocabularies Australia.</strong> <br> <br>
DOI: 10.6084/m9.figshare.1591090.v1
title: Human Activities and its effect on Dandelion Abudance

description: The purpose of this experiment was to determine whether the abundance of plant abundance in an environment is affected by human activity. The plant species used for this experiment was the dandelion Taraxacum officinale. The two variables of human activities were pollutants and the amount of solid garbage. The response variable would be the abundance of T. officinale. Data was collected using quadrant sampling and random sampling. The hypothesis states that pollutants and solid garbage found in close proximity of the dandelion species’ Taraxacum officinale will have an effect on its’ abundance. The experiment was done over a span of two days at York University’s grassland. The experiment was carried out approximately 3pm – 4:30 pm on Oct 19, 2015 and Oct 26, 2015. It was about 11 degrees Celsius, windy and chilly on both days with a little bit of sun. Three ranges were used which were 3-15 feet, 110-200 feet and 60-110 feet away from the road. These were indicators of pollutants. The closer the range is to the road with cars, the more air pollution there is. My partners Elaine, Surfyan, Alex, Frankie and I collected data by randomly placing a quadrat in each range. The number of T. officinale and garbage were counted in each quadrat. This was repeated 30 times for each range on day 1. It was then repeated 20 times again for each range on day 2, thus giving a total of 150 replicates and 50 replicates for each range. This was to ensure that the data collected was representative of the total grassland area and dandelions in that area being studied.
DOI: 10.6084/m9.figshare.3514079.v1
title: Appendix B. Definitions of tree-size classes by site.

description: Definitions of tree-size classes by site.
DOI: 10.17632/by4gbgr9gd
title: PCAWG Intra-Tumor Heterogeneity Simulations

description: This resource contains the simutated samples that go with the paper `Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes` which is available at the URL in the Related Links section below. Please find a full description of these data in the supplementary information of this paper, as well as the full author list and credit for creation of these data. Please find below a description of the included files. PhylogicNDT500: Note difference between directories marked with and without "_all". It is recommended to not use files in "_all" directories, as they contain mutations below the detection limit of 3 variant reads. * Copynumber: Segments/ directory - Subclonal copynumber is encoded via multiple reports of the same segment with a different CCF * Variants: VCF/ directory - These follow PCAWG consensus basic read count annotations * Purity/ploidy: PP_Table/ directory * Truth clusters: Subclonal_Structure/ directory * Truth assignments: Mut_Assign/ directory * Truth mutations: Mafs_Real_Info/ directory SimClone1000 - testing: * Copynumber: *_segments.txt in each sample directory - There is no subclonal copynumber * Variants: *.vcf - These follow PCAWG consensus basic read count annotations * Purity/ploidy: Included purity_ploidy.txt file SimClone1000 - truth: * Every simulation has its own directory tree. * Truth clusters (cluster position in CCF): [samplename]/simulated_0001/truth_tree/simulated_0001_subclonal_structure.txt * Truth assignments: [samplename]/simulated_0001/truth_tree/simulated_0001_mutation_assignments.txt * Truth mutations: [samplename]/simulated_0001/simulated_0001_0001/truth/simulated_0001_0001_multiplicity.txt
DOI: 10.6084/m9.figshare.14450190.v1
title: Supplemental Table 1 DEGs.xlsx

description: DEGs for: human bulk kidney, human LMD glomerular and proximal tubules (PT), mouse bulk kidney, and mouse snRNAseq podocyte and PT clusters<br>
DOI: 10.6084/m9.figshare.23798556.v1
title: <b>An Effective Feature Selection and Classification Technique to Palmprint Biometric Identification Systems</b>

description: In this paper, we proposed a novel deep-learning technique. In this research, convert the input image to greyscale, crop and resize the image, using CLAHE to enhance the contrast of the palmprint image. After that, extract the features from the image and select important features from extracted features to reduce the time to perform. Finally, employ the Darknet Convolutional Neural Network (DNetCNN) approach to classify the palmprint image, whether matched or not-matched with the Sooty Tern Optimization Algorithm, to improve classification accuracy.
DOI: 10.6084/m9.figshare.23944839.v2
title: Table S4: HN-ratio (Expression Ratio) Data for All Mouse Genes

description: HN-ratios (expression ratios) are calculated for data collected for pairs of heat stress and non-treatment conditions in mouse.A script was used to calculate the HN-ratio (https://github.com/no85j/hypoxia_code/blob/master/CodingGene/HN-ratio_log2.ipynb).
DOI: 10.17632/mg2vrdvvth
title: Abui Botanical Dataset: Healing Plants

description: This dataset collects a systematic and comprehensive list of phytonyms from the Abui language. Abui is a Papuan endangered language spoken in the central territories of Alor Island (Alor-Pantar Archipelago, Southeast Indonesia, Timor area). In particular, our lexical list provides names of medicinal plants (or common plants used also for medical purposes) that have a profound cultural valency. The related plants are used not only for the treatment of wounds and diseases, but are also attested in local myths, legends, and oral traditions. 

The lexical list includes: 

1) the English phytonyms, with the related scientific names in binomial nomenclature. Scientific denominations were recorded when we were able to confirm and validate the identifications of the plants (English name, Abui name, specimen, botanical features, taxonomy);
2) the plant names in Abui, collected from the native speakers and validated with our consultants and a large body of volunteers from the Abui communities. In very few cases, we postulate a possible reconstructed proto-form in the Proto-Alor-Pantar proto-language;
3) a brief description of the medicinal properties of the plants according to the traditional Abui knowledge;
4) short notes on the relevance of the plants in the culture and society of the Abui people.

Data was collected over several Language Documentation fieldworks conducted between 2015 and 2022 in Alor Island, Abui territory, prevalently in the villages of Takpala and Takalelang.
DOI: 10.6084/m9.figshare.14544645.v2
title: Disappearance of coarse woody debris, following a land-clearing event

description: 'preProcessed.Rdata' holds an R object of the data used to assess the disappearance of coarse woody debris.R script 'analysis.R' analyses 'preProcessed.Rdata'. R script 'functions.R' contains functions called by 'analysis.R'. Image 'medianAnnualRain_mm.tif' holds rainfall information for Queensland.
DOI: 10.6084/m9.figshare.27826293.v2
title: ActInfer-LLM_Data&Codes

description: Data and codes for manuscript titled "ActInfer-LLM: Inferring Activity Semantics from Raw Trajectories Through Geographic-Information Enhanced LLM Agents".
DOI: 10.6084/m9.figshare.7803686.v1
title: MATLAB codes for calculating the external quantum efficiency and effective spontaneous emission enhacements of arbitrarily distributed quantum emitters embedded in nano-patterned structures

description: These codes were developed to solve all the scenarios proposed in the manuscript: <i>A. F. Mota, A. Martins,V. M. Pepino, H. Ottevaere, W. Meulebroeck, F. L. Teixeira, and B.-H. V. Borges, "Semi-analytical modeling of arbitrarily distributed quantum emitters embedded in nano-patterned hyperbolic metamaterials", </i>submitted to JOSA B.<br>For more details about the formalism and the proposed scenarios please check the above manuscript.
DOI: 10.6084/m9.figshare.24212460.v1
title: PRISMA checklist for abstract and review

description: Systemic review and meta-analysis of emotional intelligence research among Indian Teachers.
DOI: 10.6084/m9.figshare.3549915.v1
title: Appendix D. Figures showing ordination biplot diagrams of canonical correspondence analysis displaying the response of six organism groups to the interaction of sowing treatment and plant species identity; biomass of each feeding group of soil organisms in the rhizosphere soil of L. corniculatus and P. lanceolata plants, and modeled nitrogen mineralization in the rhizosphere of L. corniculatus and P. lanceolata plants.

description: Figures showing ordination biplot diagrams of canonical correspondence analysis displaying the response of six organism groups to the interaction of sowing treatment and plant species identity; biomass of each feeding group of soil organisms in the rhizosphere soil of L. corniculatus and P. lanceolata plants, and modeled nitrogen mineralization in the rhizosphere of L. corniculatus and P. lanceolata plants.
DOI: 10.6084/m9.figshare.9253775.v1
title: Additional files 2: of Clustering analysis of microRNA and mRNA expression data from TCGA using maximum edge-weighted matching algorithms

description: Description of data: inner weight, emitter to matched receiver outer weight, receiver to matched emitter outer weight, condition 01, and condition 02 of each cluster derived from a specific algorithm in the MWMM approach. (ZIP 18 kb)
DOI: 10.6084/m9.figshare.25954027.v4
title: A compendium of synthetic lethal gene pairs defined by extensive combinatorial pan-cancer CRISPR screening

description: To be confirmed
DOI: 10.6084/m9.figshare.21432123.v4
title: A new daily gridded precipitation dataset for the Chinese mainland based on gauge observations

description: The new daily gridded precipitation dataset over the Chinese mainland (CHM_PRE) is a long-term precipitation dataset with fine spatiotemporal resolution developed to facilitate the advancement of drought monitoring, flood forecasting, and hydrological modeling. Its record starts from 1961 and keeps updating yearly (currently up to 2022) with spatial resolutions of 0.5° × 0.5°, 0.25° × 0.25°, and 0.1° × 0.1°. Using daily observations from 2,839 gauges across China and nearby regions, the dataset was made through the daily climatology field combined with the precipitation ratio field algorithm. The two interpolation fields were adjusted based on monthly precipitation constraint and topographic characteristic correction. <br> Global attributes: ·<strong> </strong>Variable = daily precipitation (pre) ·<strong> </strong>Variable = number of stations in each grid every year (station_number) · Date format = NetCDF · Temporal Range = 1961-01-01 to 2022-12-31 · Spatial extent = 18°N–54°N, 72°E–136°E · Units = mm/day · Missing value = -99.9 <br>
DOI: 10.6084/m9.figshare.24466603.v1
title: Full dispersion spectrum inversion

description: Full dispersion spectrum inversion
DOI: 10.6084/m9.figshare.25211156.v1
title: Supplementary Material for: Psychometric properties of the WBIS/-M in a representative prebariatric sample – evidence for an improved 10-item version

description: Introduction The Weight Bias Internalization Scale and the Modified Weight Bias Internalization Scale are well-established self-report questionnaires for assessing weight bias internalization, which is widespread among bariatric patients. However, among this group, psychometric properties of the Weight Bias Internalization Scale have only been examined in small samples showing unsatisfactory model fit and have not been explored for the modified questionnaire. Methods This study psychometrically evaluated and compared the Weight Bias Internalization Scale and Modified Weight Bias Internalization Scale in a large sample of prebariatric patients (N=825, mean age=46.75 years, SD=11.55) regarding item characteristics, model fit to unidimensionality, reliability, construct validity, and measurement invariance. Results Item 4 of both questionnaires showed low corrected item-total correlations (&lt;.40) and was therefore removed from the scales. The new 10-item versions showed improved item characteristics, internal consistency, model fit to unidimensionality, and convergent and divergent validity when compared to the 11-item versions. The best psychometric properties were found for the 10-item version of the Modified Weight Bias Internalization Scale. Conclusion The 10-item version of the Modified Weight Bias Internalization Scale surpasses the other versions studied in all psychometric properties. Therefore, it should be used in prebariatric patients to detect weight bias internalization and provide them with psychological interventions that could improve bariatric surgery outcomes.
DOI: 10.6084/m9.figshare.25802767.v1
title: Data sets in paper review

description: The data set in the paper review and some data will be cancelled if the review fails.
DOI: 10.6084/m9.figshare.3512540.v1
title: Appendix A. Sample calculation illustrating the manner in which community composition is predicted from multiple discriminant analysis (MDA) classifications of TWINSPAN fish assemblage types.

description: Sample calculation illustrating the manner in which community composition is predicted from multiple discriminant analysis (MDA) classifications of TWINSPAN fish assemblage types.