cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12642548
title: FASTQ files for reads from amplicon sequencing of 96 An. coluzzii and gambiae specimens: Plate2.zip

description: Each zip file contains the reads from one plate of amplicon sequencing for Anopheles coluzzii and An. gambiae. Reads are in 96 FASTQ files, corresponding to 96 specimens per plate. <br>
DOI: 10.6084/m9.figshare.12642548.v1
title: FASTQ files for reads from amplicon sequencing of 96 An. coluzzii and gambiae specimens: Plate2.zip

description: Each zip file contains the reads from one plate of amplicon sequencing for Anopheles coluzzii and An. gambiae. Reads are in 96 FASTQ files, corresponding to 96 specimens per plate. <br>
DOI: 10.6084/m9.figshare.12642554.v1
title: FASTQ files for reads from amplicon sequencing of 96 An. coluzzii and gambiae specimens: Plate3.zip

description: Each zip file contains the reads from one plate of amplicon sequencing for Anopheles coluzzii and An. gambiae. Reads are in 96 FASTQ files, corresponding to 96 specimens per plate. <br>
DOI: 10.6084/m9.figshare.12640661
title: 储层物性变化.xlsx

description: Relationship between reservoir physical property change and asphalt
DOI: 10.6084/m9.figshare.12640652
title: PLSO_data.csv

description: This data is the original data for accepted article [PLSO_D_20_00787] regarding "N addition on terrestrial C:N".
DOI: 10.21227/03k1-9r69
title: Data Bandwidth Measurement for Conference Call Data Usage

description: During the first half of 2020, the COVID-19 pandemic changed the social gathering lifestyle to online business and social interaction. The worldwide imposed travel bans and national lockdown prevented social gatherings, making learning institutions and businesses to adopt an online platform for learning and business transactions. This development led to the incorporation of video conferencing into daily activities. This data article presents broadband data usage measurement collected using Glasswire software on various conference calls made between July and August. The services considered in this work are Google Meet, Zoom, Mixir, and Hangout. The data were recorded in Microsoft Excel 2016, running on a personal computer. The data was cleaned and processed using google colaboratory, which runs Python scripts on the browser. Exploratory data analysis is conducted on the data set using linear regression to model a predictive model to assess the best performance model that offers the best quality of service for online video and voice conferencing. The data is necessary to learning institutions using online programs and to learners accessing online programs in a smart city and developing countries. The data is presented in tables and graphs
DOI: 10.6084/m9.figshare.12640652.v1
title: Data set 1.csv

description: This data is the original data for accepted article [AGMET_108104]
DOI: 10.21227/gya2-0646
title: Data Bandwidth Measurement for Conference Call Data Usage

description: During the first half of 2020, the COVID-19 pandemic changed the social gathering lifestyle to online business and social interaction. The worldwide imposed travel bans and national lockdown prevented social gatherings, making learning institutions and businesses to adopt an online platform for learning and business transactions. This development led to the incorporation of video conferencing into daily activities. This data article presents broadband data usage measurement collected using Glasswire software on various conference calls made between July and August. The services considered in this work are Google Meet, Zoom, Mixir, and Hangout. The data were recorded in Microsoft Excel 2016, running on a personal computer. The data was cleaned and processed using google colaboratory, which runs Python scripts on the browser. Exploratory data analysis is conducted on the data set using linear regression to model a predictive model to assess the best performance model that offers the best quality of service for online video and voice conferencing. The data is necessary to learning institutions using online programs and to learners accessing online programs in a smart city and developing countries. The data is presented in tables and graphs
DOI: 10.6084/m9.figshare.12640652.v2
title: Data set 1.csv

description: This data is the original data for accepted article [AGMET_108104]
DOI: 10.6084/m9.figshare.12640583
title: Supplementary Table 2

description: A table containing information for each of the individual genes used in our generated multigene phylogenies. The table contains the gene's ID, its function, the length and the source of the sequence.<br>
DOI: 10.6084/m9.figshare.12640571
title: Supplementary Table 1

description: This is a table containing the indices used for generating Illumina libraries for this study. Each species/sample run has its own set of indices. These samples were submitted to the Institute for Genomic Sciences at the University of Maryland--Baltimore.<br>
DOI: 10.6084/m9.figshare.12640463
title: NZ1, NZ5 and NZ29 nanopore-only genome assemblies

description: The nanopore-only genome assembly for isolates NZ1, NZ5 and NZ29. Basecalled with Guppy (fast mode), assembled with Flye, polished 4x with Racon, and 1x with Medaka. Not deposited in GenBank due to a high number of pseudogenes, likely the result of residual indel errors.
DOI: 10.21227/w0m0-mw21
title: Childhood Medulloblastoma Microscopic Images

description: Microscopic image based analysis plays an important role in histopathological computer based diagnostics. Identification of childhood medulloblastoma and its proper subtype from biopsy tissue specimen of childhood tumor is an integral part for prognosis.The dataset is of Childhood medulloblastoma (CMB) biopsy samples. The images are of 10x and 100x microscopic magnifications, uploaded in separate folders. The images consist of normal brain tissue cell samples and CMB cell samples of different WHO defined subtypes. An excel sheet is also uploaded for ease of data description. The images are .jpeg images at standard RGB color format with 24 bit depth. The images are obtained by observing the medical slides under microscope where a camera was mounted to the computer that captures the microscopic images. We have collected a total of 202 and 153 images of 10x and 100x respectively. Number of pateints was 11. No direct pateint information was disclosed during the whole procedure and data was collected by the standard operating procedure of the medical centers. The images are obtained under clinical supervision of the medical centers.
DOI: 10.21227/qx3h-bm80
title: Childhood Medulloblastoma Microscopic Images

description: Microscopic image based analysis plays an important role in histopathological computer based diagnostics. Identification of childhood medulloblastoma and its proper subtype from biopsy tissue specimen of childhood tumor is an integral part for prognosis.The dataset is of Childhood medulloblastoma (CMB) biopsy samples. The images are of 10x and 100x microscopic magnifications, uploaded in separate folders. The images consist of normal brain tissue cell samples and CMB cell samples of different WHO defined subtypes. An excel sheet is also uploaded for ease of data description. The images are .jpeg images at standard RGB color format with 24 bit depth. The images are obtained by observing the medical slides under microscope where a camera was mounted to the computer that captures the microscopic images. We have collected a total of 202 and 153 images of 10x and 100x respectively. Number of pateints was 11. No direct pateint information was disclosed during the whole procedure and data was collected by the standard operating procedure of the medical centers. The images are obtained under clinical supervision of the medical centers.
DOI: 10.6084/m9.figshare.12640370
title: Raw_data_Amino_acids_biogenic_amines

description: Dataset of biomolecules.
DOI: 10.17637/rh.12640244
title: Accompanying data "Investigating the implications of Shifting Baseline Syndrome on conservation"

description: Source data for "Investigating the implications of Shifting Baseline Syndrome on conservation" published in People and Nature. Paired data study used biological datasets for each species (files named by species in csv format) and anonymised questionnaire data (uk_questionnaire_data.csv).
DOI: 10.17637/rh.12640244.v1
title: Accompanying data "Investigating the implications of Shifting Baseline Syndrome on conservation"

description: Source data for "Investigating the implications of Shifting Baseline Syndrome on conservation" published in People and Nature. Paired data study used biological datasets for each species (files named by species in csv format) and anonymised questionnaire data (uk_questionnaire_data.csv).
DOI: 10.6084/m9.figshare.12640169
title: Boletín del bibliotecario - Julio de 2020

description: Boletín con regularidad bimensual, donde se promueve la lectura, se da a conocer las fuentes de información que se incorporan a la biblioteca universitaria y sea sbordan temas de interés para usuarios y especialistas de la información<br>
DOI: 10.6084/m9.figshare.12640169.v1
title: Boletín del bibliotecario - Julio de 2020

description: Boletín con regularidad bimensual, donde se promueve la lectura, se da a conocer las fuentes de información que se incorporan a la biblioteca universitaria y sea sbordan temas de interés para usuarios y especialistas de la información<br>
DOI: 10.6084/m9.figshare.12640007
title: PeerJ-RT-PCR.xlsx

description: We randomly selected five DEGs (<i>Zm00001d005841</i>, <i>Zm00001d053932</i>, <i>Zm00001d053939</i>, <i>Zm00001d048407</i>, and <i>Zm00001d026370</i>) to conduct qRT-PCR and obtain their relative expression levels in the collected samples.The qRT-PCR was carried out by the Applied Biosystems 7500 Real-Time PCR System, with the reaction program as follows: 2 min at 98 °C, 2 s at 98 °C, 10 s at 59 °C, 40 cycles.A thermal denaturing step was then performed for generation of the melting curves for amplification specificity verification. The maize actin1 gene was selected as the reference for normalizing the gene expression. Three technical replicates were set for all of the reactions. The 2<sup>-</sup><sup>△△CT</sup> method was used for calculation of the relative expression levels of target genes (Livak & Schmittgen 2001).<br>
DOI: 10.6084/m9.figshare.12639908
title: Binary Leaf Images

description: Binary leaf images obtained from segmentation process.
DOI: 10.6084/m9.figshare.12639821
title: Confusion matrix for TD1

description: Confusion matrix for TD1
DOI: 10.6084/m9.figshare.12639821.v1
title: Confusion matrix for TD1

description: Confusion matrix for TD1
DOI: 10.6084/m9.figshare.12639692
title: Why are new journals created? An international analysis of information and documentation titles (2013-2018) [Data set]

description: Data set for the study published in the journal El Profesional de la información (vol. 29, num. 4) and devoted to the analysis of the creation or title changes of scientific journals in the information and documentation (ID) area in the period 2013-2018. Based on the total of 62 such journals identified through <i>ISSN Portal</i> and <i>UlrichsWeb</i>, the following are described: characteristic aspects such as country, language, type of publisher, and access model; presence in bibliographic databases, citations, or journal directories; survival and volume of articles published; annual number of citations to articles according to <i>Google Scholar</i>; thematic scope declared by the editors; and finally, the justification given by the editors for the change of title or the creation of a new journal. Among the main conclusions regarding newly created titles, the leading role of academic publishers in expanding national university systems and open-access titles stands out. In general, new publications generate few articles per year, have little presence in databases, and receive few citations. Title changes were found only in journals published by commercial publishers. In both cases, journals with a general thematic scope predominate and a significant number of journals did not justify their creation or change of title.<br>
DOI: 10.6084/m9.figshare.12639698
title: M. incanus' occurrence and abundance data

description: This text-based matrix contains the entire occurrence records of <i>Marmosops incanus</i> used for model calibration and its abundance data used in statistical analyses.<br>
DOI: 10.6084/m9.figshare.12639698.v1
title: M. incanus' occurrence and abundance data

description: This text-based matrix contains the entire occurrence records of <i>Marmosops incanus</i> used for model calibration and its abundance data used in statistical analyses.<br>
DOI: 10.6084/m9.figshare.12639542
title: Supplementary Material for: Dietary Restriction Suppresses Steatosis-Associated Hepatic Tumorigenesis in Hepatitis C Virus Core Gene Transgenic Mice

description: <b><i>Background and Aims:</i></b> Dietary restriction (DR) is a preventive strategy for obesity, metabolic syndrome, cardiovascular disease, and diabetes. Although an interconnection between obesity, metabolic syndrome, fatty liver, and hepatocellular carcinoma has been documented, the mechanism and impact of DR on steatosis-derived hepatocarcinogenesis are not fully understood. This study aimed to evaluate whether DR can prevent hepatic tumorigenesis. <b><i>Methods:</i></b> Male hepatitis C virus core gene transgenic (HCVcpTg) mice that develop spontaneous age-dependent insulin resistance, hepatic steatosis, and ensuing liver tumor development without apparent hepatic fibrosis, were fed with either a control diet ad libitum (control group) or 70% of the same control diet (DR group) for 15 months, and liver phenotypes were investigated. <b><i>Results:</i></b> DR significantly reduced the number and volume of liver tumors. DR attenuated hepatic oxidative and endoplasmic reticulum stress and markedly suppressed nuclear factor-κB, signal transducer and activator of transcription 3 (STAT3) and STAT5, and phosphorylation of extracellular signal-regulated kinase, leading to downregulation of several pro-oncogenic mediators, such as cyclin D1. Serum insulin and insulin-like growth factor 1 levels, as well as hepatic expression of insulin receptor substrate 1/2, phosphatidylinositol-3 kinase, and serine/threonine-protein kinase AKT, were downregulated by DR. A transcriptome analysis revealed that STAT3 signaling and lipogenesis were the most suppressed hepatocarcinogenic pathways affected by DR. Additionally, DR stimulated autophagy and p62/sequestosome 1 degradation, enhanced phosphorylation of AMP-activated protein kinase α, increased fibroblast growth factor 21 expression, and attenuated expression of senescence-associated secretory phenotypes. <b><i>Conclusion:</i></b> DR suppressed steatosis-associated hepatic tumorigenesis in HCVcpTg mice, mainly due to attenuation of pathways involved in inflammation, cellular stress, cell proliferation, insulin signaling, and senescence. These findings support the notion that persistent 30% reduction of daily food intake is beneficial for preventing steatosis-associated hepatocarcinogenesis caused by HCV core protein.
DOI: 10.6084/m9.figshare.12639221
title: Supplementary Material for: ADHD Is Associated with a Higher Risk for Traumatic Events, Self-Reported PTSD, and a Higher Severity of PTSD Symptoms in Alcohol-Dependent Patients

description: <b><i>Introduction:</i></b> Alcohol dependence (AD) is frequently associated with attention-deficit/hyperactivity disorder (ADHD) as well as with posttraumatic stress disorder (PTSD). <b><i>Objective:</i></b> Aim of this study was to investigate whether in patients with AD, ADHD is associated with an increased rate of exposure to potentially traumatic events (PTEs) and PTSD, with increased PTSD severity and higher impact on daily functioning. <b><i>Methods:</i></b> Patients with AD were thoroughly assessed for ADHD during long-term residential treatment. Participants also completed the Posttraumatic Diagnostic Scale (PDS). The PDS is a 49-item self-report instrument that assesses exposure to different PTEs, DSM-IV criteria for PTSD, severity of PTSD, and related functional impairment. <b><i>Results:</i></b> Of 341 patients with AD, 66 were diagnosed with ADHD (19%). ADHD was associated with a more frequent exposure to PTEs (88 vs. 65%, <i>p</i> &lt; 0.001). In patients with PTEs (<i>n</i> = 237), odds for PTSD were higher in ADHD versus no-ADHD patients (OR 8.9, 95% CI 3.9–20.5). Furthermore, PTSD severity and functional impairment were increased in ADHD patients. <b><i>Conclusions:</i></b> ADHD in patients with AD is associated with a higher frequency of PTEs and PTSD with more severe and more impairing PTSD symptoms. In alcohol-dependent patients with ADHD, regular screening for PTSD should be considered.
DOI: 10.6084/m9.figshare.12639104
title: Marital Networks and Portfolios of Prestige: Digital Humanities Perspectives on the Study of Taiwanese Elites

description: These are the supplementary materials for an article published in European Journal of East Asian Studies entitled "Marital Networks and Portfolios of Prestige: Digital Humanities Perspectives on the Study of Taiwanese Elites", by Táňa Dluhošová, with DOI: 10.1163/15700615-01901003.<br>These appendices consist of three excel tables and one Gephi file.<br>
DOI: 10.6084/m9.figshare.12639038
title: sample.txt

description: we will add abstract here later
DOI: 10.6084/m9.figshare.12639104.v1
title: Marital Networks and Portfolios of Prestige: Digital Humanities Perspectives on the Study of Taiwanese Elites

description: These are the supplementary materials for an article published in European Journal of East Asian Studies entitled "Marital Networks and Portfolios of Prestige: Digital Humanities Perspectives on the Study of Taiwanese Elites", by Táňa Dluhošová, with DOI: 10.1163/15700615-01901003.<br>These appendices consist of three excel tables and one Gephi file.<br>
DOI: 10.26180/5f083ae5e8a38
title: Supplementary Data_One Earth_Lovelock and Reef.xlsx

description: Supplementary Data for Lovelock and Reef (2020). One Earth. Estimated gains and losses and net change of mangrove carbon stocks (in Tg C) for countries with mangrove cover to the year 2100 under sea level projections of global climate change scenario Representative Concentration Pathways 4.5 and 8.5. Estimates were based on the models of Schuerch et al. 2019 (change in mangrove cover), Sanderman et al. 2018 (sediment carbon to 1 m sediment depth) and Simard et al. 2019 (aboveground biomass of mangroves). NA is data is not available. <br><br>
DOI: 10.6084/m9.figshare.12639038.v1
title: sample.txt

description: we will add abstract here later
DOI: 10.6084/m9.figshare.12639038.v2
title: sample.txt

description: we will add abstract here later
DOI: 10.6084/m9.figshare.12638957
title: Raw data and code for epidemiological model

description: Files in this folder contain data collected from parasite adaptation assays.<br>1. Dispersal_data: number of infected individuals observed in dispersal patch (n_I_DISPERSERS) and number of infected in resident tube (n_I_RESIDENT) for each unique combination of Host genotype, selection line and experimental block.2. Infectivity_data: number of infected and uninfected individuals on day 4 post inoculation for each culture; unique combinations of host genotype and selection line.3. Infectiousness_data: number of host with infectious stages of infection over time (days post infection, DPI). Unique host genotype and selection line combinations are measured over a sliding-window as explained in the text.4. Virulence data: data collected from the virulence assay. The maximum number of paramecia observed in each culture (n_paramecium_max) and the number of paramecium at day 20 (n_paramecium_dat20), for each combination of infected and uninfected host genotype and selection lines. Column survive_day (and column censor) refer to the day that each culture goes extinct, or are alive at experimental termination on day 20.5. Movement_data: swimming speed (net_speed_mean) and turning angle (sd_turning_mean) for each culture; unique combinations of infected and uninfected host genotype and selection line.<br>And, a compressed file contains the code and data used to fit the epidemiological model. Specified details and readme is provided within the folder.
DOI: 10.6084/m9.figshare.12638825
title: Heteroptera_Combined_22sp._GTRGAMMAI_B500.zip

description: These data are used to test the phylogenetics performance of the markers developed by ADMarker. they are the tree files out from RAxML.<br>
DOI: 10.6084/m9.figshare.12638825.v1
title: Heteroptera_Combined_22sp._GTRGAMMAI_B500.zip

description: These data are used to test the phylogenetics performance of the markers developed by ADMarker. they are the tree files out from RAxML.<br>
DOI: 10.6084/m9.figshare.12638831
title: Supplementary Material for: A Rat Model with Multivalve Calcification Induced by Subtotal Nephrectomy and High-Phosphorus Diet

description: <b><i>Background:</i></b> Chronic kidney disease (CKD) with known valve calcification (VC) places individuals at high risk of cardiovascular disease. The study of VC in CKD is challenging due to the lack of a suitable research model. Here, we established a rat model of multivalve calcification induced by subtotal nephrectomy and a high-phosphate (HP) diet and analyzed the valve characteristics. <b><i>Methods:</i></b> We established a CKD model in Sprague-Dawley rats by performing 5/6 nephrectomy (5/6Nx) followed by feeding with chow containing different phosphate concentrations for 8, 12, or 16 weeks. The rats were divided into 4 groups: sham+normal phosphate (NP, 0.9% P), sham+high phosphate (HP, 2.0% P), 5/6Nx+NP, and 5/6Nx+HP. Serum creatinine (Scr), blood urea nitrogen (BUN), parathyroid hormone (PTH), calcium, phosphorus, and 24-h urine protein levels were investigated. Pathological examinations included histological characterization, safranin staining, Alcian blue staining, and von Kossa staining at different time points. Using nanoanalytical electron microscopy, we examined valves from rats in the 5/6Nx+HP and sham+HP groups and detected spherical particles using energy-dispersive spectroscopy (EDS) to observe microscopic changes in the valves. In addition, the calcified tissues were analyzed for phase and crystallization properties using an X-ray powder diffractometer. <b><i>Results:</i></b> The rats in the 5/6Nx+HP and 5/6Nx+NP groups presented with increased levels of Scr, BUN, and 24-h urine protein compared with those of the rats in the sham+HP and sham+NP groups. High levels of PTH were observed, and hematoxylin and eosin staining and immunohistochemistry for proliferating cell nuclear antigen showed parathyroid hyperplasia in rats in the 5/6Nx+HP group but not in the 5/6Nx+NP group. In rats in the 5/6Nx+HP group, extracellular matrix glycosylation was observed in the aortic valve in the 12th week and the mitral valve in the 16th week. In the 16th week, chondrocytes appeared in the aortic valve, as confirmed by immunofluorescence and Western blotting. Calcified particles mainly composed of phosphorus and calcium were observed in both the aortic and mitral valves by transmission electron microscopy and scanning electron microscopy (SEM). The main mineral component of the calcified aortic valve particles was hydroxyapatite [Ca<sub>5</sub>(PO<sub>4</sub>)<sub>3</sub>(OH)], as shown by X-ray diffraction. However, there were no obvious differences in heart function between rats in the 5/6Nx+HP and sham+HP groups. <b><i>Conclusions:</i></b> Our findings demonstrate that multivalve calcification is involved in CKD following 16-week HP and that hydroxyapatite [Ca<sub>5</sub>(PO<sub>4</sub>)<sub>3</sub>(OH)] is the main component of the calcified aortic valve particles of rats in the 5/6Nx+HP group.
DOI: 10.6084/m9.figshare.12638801
title: Heteroptera_combined_supermatrix.zip

description: These data are used to test the phylogenetics performance of the markers developed by ADMarker. they are the final DNA contatenated supermatrix of Heteroptera <br>