cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/b37tk3xbyt.1
title: US Mental Health Geospatial Dataset

description: Objectives: Define the role of increasing cannabis availability on population mental health (MH). Methods. Ecological cohort study of National Survey of Drug Use and Health (NSDUH) geographically-linked substate-shapefiles 2010-2012 and 2014-2016 supplemented by five-year US American Community Survey. Drugs: cigarettes, alcohol abuse, last-month cannabis use and last-year cocaine use. MH: any mental illness, major depressive illness, serious mental illness and suicidal thinking. Data analysis: two-stage and geotemporospatial methods in R. Results: 410,138 NSDUH respondents. Average response rate 76.7%. When all drug exposure, ethnicity and income variables were combined in final geospatiotemporal models tobacco, alcohol cannabis exposure, and various ethnicities were significantly related to all four major mental health outcomes. Cannabis exposure alone was related to any mental illness (β-estimate= -3.315+0.374, P&lt;2.2x10-16), major depressive episode (β-estimate= -3.712+0.454, P=3.0x10-16), serious mental illness (SMI, β-estimate= -3.063+0.504, P=1.2x10-9), suicidal ideation (β-estimate= -3.013+0.436, P=4.8x10-12) and with more significant interactions in each case (from β-estimate= 1.844+0.277, P=3.0x10-11). Geospatial modelling showed a monotonic upward trajectory of SMI which doubled (3.62% to 7.06%) as cannabis use increased. Extrapolated to whole populations cannabis decriminalization (4.35+0.05%, Prevalence Ratio (PR)=1.035(95%C.I. 1.034-1.036), attributable fraction in the exposed (AFE)=3.28%(3.18-3.37%), P&lt;10-300) and legalization (4.66+0.09%, PR=1.155(1.153-1.158), AFE=12.91% (12.72-13.10%), P&lt;10-300) were associated with increased SMI vs. illegal status (4.26+0.04%). Conclusions: Data show all four indices of mental ill-health track cannabis exposure and are robust to multivariable adjustment for ethnicity, socioeconomics and other drug use. MH deteriorated with cannabis legalization. Together with similar international reports and numerous mechanistic studies preventative action to reduce cannabis use-exposure is indicated.
DOI: 10.17632/fjg5cbzffh.3
title: Noisy COVID-19 X-ray Dataset

description: This dataset includes X-ray images which are affected by noise and burning. The noise includes AWGN and S & P noise. In addition, a denoised dataset is included.
DOI: 10.6084/m9.figshare.3761562.v1518
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.3890238
title: Using the history of the Antarctic Ice Sheet to reduce uncertainties in projections of global sea level rise

description: Ice sheet models are the most descriptive tools available to simulate the future evolution of the Antarctic Ice Sheet (AIS), including its contribution towards changes in global sea level. However, our knowledge of the dynamics of the coupled ice-ocean-lithosphere system is inevitably limited, in part due to a lack of observations. Furthermore, to build computationally efficient models that can be run for multiple millennia, it is necessary to use simplified descriptions of ice dynamics. Ice sheet modelling is therefore a poorly constrained exercise. The past evolution of the AIS provides an opportunity to improve the description of physical processes within ice sheet models and, therefore, to constrain our understanding of the role of the AIS in driving changes in global sea level. We use the Parallel Ice Sheet Model (PISM) to demonstrate how past changes can be used to improve our ability to predict the future evolution of the AIS. A large perturbed-physics ensemble is generated, spanning uncertainty in the parameterisations of key physical processes within the model. A Latin hypercube approach is used to optimally sample the range of uncertainty in parameter values. This perturbed-physics ensemble is used to simulate the evolution of the AIS from the Last Glacial Maximum (21,000 years ago) until 5,000 years into the future. Records of past ice sheet thickness and extent are then used to determine which ensemble members are the most realistic. This allows us to use the known history of the AIS to constrain our understanding of its past contribution towards changes in global sea level. Critically, it also allows us to determine which ensemble members are most likely to generate realistic projections of the future evolution of the AIS. This enables us to use past changes in the AIS to reduce uncertainty in projections of future sea level rise.
DOI: 10.5281/zenodo.3890237
title: Using the history of the Antarctic Ice Sheet to reduce uncertainties in projections of global sea level rise

description: Ice sheet models are the most descriptive tools available to simulate the future evolution of the Antarctic Ice Sheet (AIS), including its contribution towards changes in global sea level. However, our knowledge of the dynamics of the coupled ice-ocean-lithosphere system is inevitably limited, in part due to a lack of observations. Furthermore, to build computationally efficient models that can be run for multiple millennia, it is necessary to use simplified descriptions of ice dynamics. Ice sheet modelling is therefore a poorly constrained exercise. The past evolution of the AIS provides an opportunity to improve the description of physical processes within ice sheet models and, therefore, to constrain our understanding of the role of the AIS in driving changes in global sea level. We use the Parallel Ice Sheet Model (PISM) to demonstrate how past changes can be used to improve our ability to predict the future evolution of the AIS. A large perturbed-physics ensemble is generated, spanning uncertainty in the parameterisations of key physical processes within the model. A Latin hypercube approach is used to optimally sample the range of uncertainty in parameter values. This perturbed-physics ensemble is used to simulate the evolution of the AIS from the Last Glacial Maximum (21,000 years ago) until 5,000 years into the future. Records of past ice sheet thickness and extent are then used to determine which ensemble members are the most realistic. This allows us to use the known history of the AIS to constrain our understanding of its past contribution towards changes in global sea level. Critically, it also allows us to determine which ensemble members are most likely to generate realistic projections of the future evolution of the AIS. This enables us to use past changes in the AIS to reduce uncertainty in projections of future sea level rise.
DOI: 10.5281/zenodo.3893841
title: Cyclic friction tests of ballast stones interfaces under varying vertical load

description: This data set contains results from cyclic ballast-ballast friction tests under varying load.<br> Two types of railway ballast were tested: “Calcite” (stems from Croatia) and “Kieselkalk”, also known as Helvetic Siliceous Limestone, (stems from Switzerland).<br> In each friction test, a stone with a distictive tip was sheared over a flat (stone) surface under a given normal load.<br> The applied normal load was increased from 10 N to 100 N in several load steps in each test.<br> For each applied load, a given number of cycles were conducted.<br> In total, 7 tests were conducted for Calcite and 8 for Kieselkalk.<br> The test results are provided in .csv files and contain (among other values) the measured coefficient of friction (CoF) values.<br> The test were organised in three test series. In all conducted test, the angular tip stones were 3D scanned before and after the tests.<br> Test series 1 and 2, involved a 3D scanning before each load increase.<br> The data of these tip scans are also provided (in .ply file format). From the 3D scans the contact areas were calculated (using an alogorithm described in the paper below).<br> A detailed description of the tests and discussion of measurements can be found in: B. Suhr, T.A. Butcher, R. Lewis, K. Six<br> "Friction and wear in railway ballast stone interfaces"<br> Tribology International 2020<br> https://doi.org/10.1016/j.triboint.2020.106498 <br> This data set is organised as follows: Folder FrictionTests: contains measured data from friction tests in .csv file format.<br> Folder TipScans: contains data from scans of ballast tip stones before/in between/after cyclic friction tests. Meshes are provided in .ply file format.<br> Folder TipScans: contains two files with detail information on the contact area calculation (for the two types of ballast tested) Each folder contains three subfolder: Series1, Series2, Series3, which contains the data of the corresponding test series,<br> see paper above for a more detailed description. Check the README.txt file for more information on the technical aspects The investigated ballast types are the same, as previously investigated 1) in uniaxial compression tests and direct shear tests:<br> Suhr, Bettina, & Six, Klaus. (2018).<br> "Compression tests and direct shear test of two types of railway ballast [Data set]"<br> Zenodo. http://doi.org/10.5281/zenodo.1423742 2) in shape analysis including 3D scans:<br> Suhr, Bettina, Six, Klaus, Skipper, William A., & Lewis, Roger. (2020).<br> "3D scans of two types of railway ballast including shape analysis information [Data set]".<br> Zenodo. http://doi.org/10.5281/zenodo.3689592
DOI: 10.5281/zenodo.3890244
title: The commitment to global sea level rise over the next 500 years: exploring the threat of the Antarctic Ice Sheet to coastal infrastructure

description: Within Australia alone, more than A$226 billion of coastal infrastructure is vulnerable to the anticipated rise in sea level by the end of the century. The IPCC Fifth Assessment Report concludes that the likely increase in global mean sea level during the 21st century ranges from 26-55 centimetres (under the low-end RCP2.6 climate scenario) to 45-82 centimetres (under the high-end RCP8.5 climate scenario). However, these projections do not take into account the potential for collapse of the marine-based sectors of the Antarctic Ice Sheet. Recent evidence has indicated that the IPCC projections may be under-estimates, with sea level increases of up to 2.5 metres possible by the end of the 21st century. Modelling studies have also demonstrated the potential for the Antarctic Ice Sheet to undergo irreversible collapse during the coming centuries, leading to dramatic increases in global sea level on time scales relevant to critical coastal infrastructure such as refineries and airports. The most extreme prediction is that Antarctica could contribute 15.65±2.00 metres to global sea level by the year 2500. Here, we combine climate modelling and ice sheet modelling to explore the evolution of the Antarctic Ice Sheet over the next 500 years under a range of climate scenarios. We run the models many times to take into account gaps in our understanding of ice sheet dynamics. This allows us to generate robust projections of the Antarctic contribution to global sea level from the present to the year 2500, complete with quantified confidence intervals. We conclude that the sea level contribution during the 21st century will be modest, consistent with the IPCC Fifth Assessment Report, but that melting of the Antarctic Ice Sheet will accelerate thereafter. By the year 2500, we predict that the Antarctic contribution to global sea level will be at least 5 metres.
DOI: 10.17632/dn695rdzv2.2
title: Supporting Information for Anthocyanin based agricultural wastes as bio-adsorbents for scavenging radioactive iodide from aqueous environment

description: Supporting Information include numerical values of FTIR peak shifts, full XPS spectra, numerical values of EXAFS quick-first shell fit and computational details of anthocyanin-iodide interaction.
DOI: 10.17632/dn695rdzv2.3
title: Supporting Information for Anthocyanin based agricultural wastes as bio-adsorbents for scavenging radioactive iodide from aqueous environment

description: Supporting Information include numerical values of FTIR peak shifts, full XPS spectra, numerical values of EXAFS quick-first shell fit and computational details of anthocyanin-iodide interaction.
DOI: 10.5281/zenodo.3889764
title: Reducing uncertainties in projections of global sea level rise

description: Ice sheet models are the most descriptive tools available to simulate the future evolution of the Antarctic Ice Sheet (AIS), including its contribution towards changes in global sea level. However, our knowledge of the dynamics of the coupled ice-ocean- lithosphere system is inevitably limited, in part due to a lack of observations. Furthermore, to build computationally efficient models that can be run for multiple millennia, it is necessary to use simplified descriptions of ice dynamics. Ice sheet modelling is therefore a poorly constrained exercise. The past evolution of the AIS provides an opportunity to improve the description of physical processes within ice sheet models and, therefore, to constrain our understanding of the role of the AIS in driving changes in global sea level.<br> <br> We use the Parallel Ice Sheet Model (PISM) to demonstrate how past changes can be used to improve our ability to predict the future evolution of the AIS. A large perturbed-physics ensemble is generated, spanning uncertainty in the parameterisations of key physical processes within the model. A Latin hypercube approach is used to optimally sample the range of uncertainty in parameter values. This perturbed-physics ensemble is used to simulate the evolution of the AIS from the Last Glacial Maximum (21,000 years ago) until 5,000 years into the future. Records of past ice sheet thickness and extent are then used to determine which ensemble members are the most realistic. This allows us to use the known history of the AIS to constrain our understanding of its past contribution towards changes in global sea level. Critically, it also allows us to determine which ensemble members are most likely to generate realistic projections of the future evolution of the AIS. This enables us to use past changes in the AIS to reduce uncertainty in projections of future sea level rise.
DOI: 10.17632/4vwzvxfcnd.2
title: Thermal proteome profiling of phosphorylated proteoforms

description: Protein and peptide files to make data analysis reproducible. Analysis pipeline is available at https://github.com/nkurzaw/phosphoTPP
DOI: 10.17632/ttccnvj8sj.1
title: The identification and functional analysis of CD8+PD-1+CD161+ T cells in hepatocellular carcinoma

description: Immunotherapy is a powerful therapeutic strategy for end-stage hepatocellular carcinoma (HCC). It is well known that T cells, including CD8+PD-1+ T cells play important roles involving tumor development. However, their underlying phenotypic and functional differences of T cell subsets remain unclear. We constructed single-cell immune contexture involving approximate 20,000,000 immune cells from 15 pairs of HCC tumor and non-tumor adjacent tissues and 10 blood samples (including 5 of HCCs and 5 of healthy controls) by mass cytometry. scRNA-seq and functional analysis were applied to explore the function of cells. Multi-color fluorescence staining and tissue microarrays were used to identify the pathological distribution of CD8+PD-1+CD161+/- T cells and their potential clinical implication. The differential distribution of CD8+ T cells subgroups was identified in tumor and non-tumor adjacent tissues. The proportion of CD8+PD1+CD161+ T cells was significantly decreased in tumor tissues, whereas the ratio of CD8+PD1+CD161- T cells was much lower in non-tumor adjacent tissues. Diffusion analysis revealed the distinct evolutionary trajectory of CD8+PD1+CD161+ and CD8+PD1+CD161- T cells. scRNA-seq and functional study further revealed the stronger immune activity of CD8+PD1+CD161+ T cells independent of MHC class II molecules expression. Interestingly, similar change of the ratio of CD8+CD161+/ CD8+CD161- T cells was also found in peripheral blood samples collected from HCC cases, indicating their potential usage clinically. We here identified different distribution, function and trajectory of CD8+PD-1+CD161+ and CD8+PD-1+CD161- T cells in tumor lesions, which provided new insights for the heterogeneity of immune environment in HCCs and also shed light on the potential target for immunotherapy.
DOI: 10.17632/vdjh9jvnyj.1
title: UPLC/Q-TOF MSMS data of different heated vegetable oils and used frying oils

description: Data accompanied with the paper "UPLC/Q-TOF MSMS data of different heated vegetable oils and used frying oils". The data consists of : UPLC/Q-TOF MSMS data of all heated and unheated oils; the difference variables of 8 different edible oil before and after heating; UPLC/Q-TOF MSMS data of used frying oils, heated oils and unheated oils. Additionally, High resolution MSMS spectra of compounds in different edible oils produced during heating or frying process.
DOI: 10.17632/fw7czhzfpx.1
title: Renewable Energy Technology Adoption Date by Rural Households in Njoro Constituency, Nakur County Kenya

description: The aim of this study was to assess the level of awareness of rural residents of Njoro constituency to the different renewable energy technologies and the factors influencing their adoption. Results of the study indicated that gender and education level had a significant effect on knowledge and awareness. It was also found that age and social-economic status did not have significant effect on the knowledge and awareness.
DOI: 10.17632/d6csk9yvry.1
title: Models and Analysis Results

description: As recommended by the reviewer we have made available the proposed models and the obtained results on this open repository.
DOI: 10.17632/mrbjm3y6z2.1
title: WhatsApp Video based rehabilitation for Patients with Parkinson's Disease

description: Parkinson disease is a second most leading chronic, progressive degenerative disease of central nervous system characterized by motor and non-motor symptoms. Telerehabilitation has been used in various neurological conditions i.e stroke, Parkinson disease.Recent studies discussed its effects equal to face-to-face therapy. This study is designed to check the effect of WhatsApp video based rehabilitation in improving balance and quality of life among patients with Parkinson disease as telerehabilitation. Five patients with Parkinson disease were recruited on the basis of inclusion criterion. All patients received balance training, stepping activity and mobility training 2 times for 7 days upto 4 weeks. Outcomes were assessed at baseline and after the intervention of the selected patients. Balance was assessed by the Berg Balance scale. And, the quality of life was assessed by the Parkinson disease questionnaire-39. Normality of the data was determined by Shapiro-Wilk test and the data was normally distributed. Paired t-test was used to compare the values of outcome measures. After the 4-week intervention, balance was improved significantly (p&lt;0.05), quality of life improved significantly (p&lt;0.05). We concluded that the WhatsApp video based rehabilitation improved the balance and quality of life of patients with Parkinson disease. However, more research is necessary to identify the effects of WhatsApp video based rehabilitation with larger sample size.
DOI: 10.5281/zenodo.3890256
title: Refining estimates of the commitment to global sea level rise over the next 500 years

description: Within Australia alone, more than A$226 billion of coastal infrastructure is vulnerable to the anticipated rise in sea level by the end of the century. The IPCC Fifth Assessment Report concludes that the likely increase in global mean sea level during the 21st century ranges from 26-55 centimetres (under the low-end RCP2.6 climate scenario) to 45-82 centimetres (under the high-end RCP8.5 climate scenario). However, these projections do not take into account the potential for collapse of the marine-based sectors of the Antarctic Ice Sheet. Recent evidence has indicated that the IPCC projections may be under-estimates, with sea level increases of up to 2.5 metres possible by the end of the 21st century. Modelling studies have also demonstrated the potential for the Antarctic Ice Sheet to undergo irreversible collapse during the coming centuries. The most extreme prediction is that, under the RCP8.5 scenario, Antarctica alone could contribute 15.65±2.00 metres to global sea level by the year 2500. Here, we combine climate modelling and ice sheet modelling to explore the evolution of the Antarctic Ice Sheet over the next 500 years under a range of climate scenarios. We run the models many times to account for gaps in our understanding of ice sheet dynamics, using our knowledge of past changes in the Antarctic Ice Sheet to identify the configurations that are plausible. This allows us to generate robust projections of the Antarctic contribution to global sea level from the present to the year 2500, complete with quantified confidence intervals. We conclude that the sea level contribution during the 21st century will be modest, consistent with the IPCC Fifth Assessment Report, but that melting of the Antarctic Ice Sheet will accelerate thereafter. We also conclude that previous studies have underestimated the range of uncertainty in projections of future global sea level rise.
DOI: 10.17632/knxpdt8stw.1
title: Data for: "A matador-like predator diversion strategy driven by conspicuous colouration in guppies". Heathcote et al, 2020

description: Data in "Experiment 1: Eye_colour_expression.csv" details guppy eye colour during predator inspections. Data in "Experiment 2: Robotic_trials.csv" details attack information when pike cichlids attacked biomimetic guppy models Data in "Experiment 3: Simulated_capture.csv" and "Experiment 3: Kinematic_data.csv" detail the data used to calculate the survival and kinematic performance of guppies during Experiment 3. Data in "Experiment 4: Data scored from Walker (2005) videos.csv" details data collected from videos used in study by Walker et al. (2005) Functional Ecology. For all data, distance metrics were measured in pixels in ImageJ and subsequently converted into millimetres; these converted values are retained in their entirety.
DOI: 10.17632/49hbdyz6zk.1
title: Research data for retention of extracellular polymeric substances (EPS) in EPS-ferrihydrite associations

description: The research dataset includes changes in elements, functional groups, and components of EPS under two formation pathways (adsorption vs coprecipitation) of ferrihydrite-EPS associations. This study provides new insights onto EPS behaviour at the mineral-water interface and is valuable for evaluating how microbial-derived compounds are stabilized by iron (hydr)oxides.
DOI: 10.17632/24nvbygjy7.2
title: Instances for the Runway Scheduling Problem During Winter Operations

description: This data set includes in total 38 instances for the Runway Scheduling Problem During Winter Operations. It includes 24 realistic instances featuring up to 75 aircraft and up to 3 runways. It includes 14 large-scale instances featuring up to 500 aircraft and up to 5 runways which are based on the airland9-13 instances from "Displacement problem and dynamically scheduling aircraft landings" by J.E. Beasley, M. Krishnamoorthy, Y.M. Sharaiha and D. Abramson, Journal of the Operational Research Society, vol.55, 2004, pp54-64.