cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25810/wpvc-fs03
title: CMIP6 Potential Temperature Sections Along 93°W (3°S–3°N, 0–500 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.15468/h4xaup
title: From saline to salty? Heterolepidoderma sinus (Chaetonotida, Chaetonotidae) from subsaline coal mine settling ponds

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kolicka, Małgorzata (2019): From saline to salty? Heterolepidoderma sinus (Chaetonotida, Chaetonotidae) from subsaline coal mine settling ponds. Zootaxa 4559 (3): 568-572, DOI: https://doi.org/10.11646/zootaxa.4559.3.7
DOI: 10.25810/qpgk-hc32
title: CMIP6 Salinity Sections Along 93°W (3°S–3°N, 0–500 m)

description: This data set is part of the larger Repeat Observations by Gliders in the Equatorial Region (ROGER) data set available here: https://doi.org/10.25810/pk4z-n050. ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.15468/hu4wv3
title: Nine new Agrilus (Coleoptera: Buprestidae, Agrilini) from Palaearctic and Oriental regions

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jendek, Eduard, Nakládal, Oto (2019): Nine new Agrilus (Coleoptera: Buprestidae, Agrilini) from Palaearctic and Oriental regions. Zootaxa 4560 (2): 345-354, DOI: https://doi.org/10.11646/zootaxa.4560.2.7
DOI: 10.15468/kh8jc4
title: The taxonomic and nomenclatural status of the nomen Anabates pulvericolor Sclater, 1858 (Aves: Furnariidae), with a neotype designation

description: This dataset contains the digitized treatments in Plazi based on the original journal article Stopiglia, Renata, Dubois, Alain, Bockmann, Flávio A., Raposo, Marcos A. (2019): The taxonomic and nomenclatural status of the nomen Anabates pulvericolor Sclater, 1858 (Aves: Furnariidae), with a neotype designation. Zootaxa 4560 (3): 554-562, DOI: https://doi.org/10.11646/zootaxa.4560.3.7
DOI: 10.15468/9z6x6u
title: A new Compsodactylus Fuhrmann (Coleoptera: Scarabaeidae: Melolonthinae) from Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Figueroa, Luis, Neita-Moreno, Jhon César (2019): A new Compsodactylus Fuhrmann (Coleoptera: Scarabaeidae: Melolonthinae) from Peru. Zootaxa 4560 (3): 587-591, DOI: https://doi.org/10.11646/zootaxa.4560.3.12
DOI: 10.15468/dmqavj
title: Two more new species of the Cyrtodactylus peguensis group (Squamata: Gekkonidae) from the fringes of the Ayeyarwady Basin, Myanmar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Grismer, L. Lee, Wood, Perry L., Thura, Myint Kyaw, Win, Nay Myo, Quah, Evan S. H. (2019): Two more new species of the Cyrtodactylus peguensis group (Squamata: Gekkonidae) from the fringes of the Ayeyarwady Basin, Myanmar. Zootaxa 4577 (2): 274-294, DOI: https://doi.org/10.11646/zootaxa.4577.2.3
DOI: 10.15468/sba8wx
title: Bombardier beetles of the genus Pheropsophus Solier 1833 (Carabidae: Brachininae: Brachinini) from Indian subcontinent

description: This dataset contains the digitized treatments in Plazi based on the original journal article Venugopal, Akhil S., Thomas, Sabu K. (2019): Bombardier beetles of the genus Pheropsophus Solier 1833 (Carabidae: Brachininae: Brachinini) from Indian subcontinent. Zootaxa 4608 (1): 65-89, DOI: https://doi.org/10.11646/zootaxa.4608.1.3
DOI: 10.15468/ucy27q
title: First record and conservation status of Allobates algorei (Anura: Aromobatidae) in Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Acevedo, Aldemar A., Armesto, Orlando, Meza-Joya, Fabio Leonardo (2019): First record and conservation status of Allobates algorei (Anura: Aromobatidae) in Colombia. Zootaxa 4608 (1): 183-186, DOI: https://doi.org/10.11646/zootaxa.4608.1.11
DOI: 10.25345/c57f2x
title: MassIVE MSV000085985 - Lipid Droplet Membrane Proteome Remodeling Parallels Ethanol Induced Hepatic Steatosis and its Resolution
title: We submit our mass spectrometry data to comply with manuscript submission guidelines of Journal of Lipid Research. The mass spectrometry data is from proteins of hepatic lipid droplets isolated from rats fed a control or liquid ethanol diet, as well as from a subset of control and ethanol fed rats that were subjected to fasting for 48 hr.
DOI: 10.15468/gz4y5f
title: Parochodaeus bituberculatus (Erichson) (Coleoptera: Ochodaeidae) and Faargia gentilii (Martínez) (Coleoptera: Scarabaeidae), two species newly discovered in Chile

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mondaca, José, Fierro, Andrés, Rothmann, Sergio (2019): Parochodaeus bituberculatus (Erichson) (Coleoptera: Ochodaeidae) and Faargia gentilii (Martínez) (Coleoptera: Scarabaeidae), two species newly discovered in Chile. Zootaxa 4608 (1): 187-190, DOI: https://doi.org/10.11646/zootaxa.4608.1.12
DOI: 10.5066/p9iyh6zy
title: Pesticide constituent data from the California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP), August 2013 - May 2018, schedule 2437 constituents

description: This Data release presents results for pesticide constituents in 460 samples collected from domestic and public-supply wells in August 2013-May 2018 for the California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP). The samples were analyzed for 225 pesticide constituents on USGS National Water Quality Laboratory analytical schedule 2437. Results from quality-control samples collected with the environmental samples and results from laboratory quality-control samples were used to re-process the data to meet project data-quality objectives. The data release includes the final approved results tabulated by result and by sample, the original and final values for results affected by the quality-control re-processing, ancillary and summary information about the pesticide constituents, and results from field replicate and field blank samples.
DOI: 10.6073/pasta/b64d19f8fc5f35cc474f4e436a2692f2
title: Point-count bird censusing: long-term monitoring of bird abundance and diversity along the Salt River in the greater Phoenix metropolitan area, ongoing since 2013

description: Waterways are often the focus of restoration efforts in urban areas. In arid regions, passive discharge of urban water sources may stimulate the recovery or growth of wetland and riparian features in dewatered or ephemeral aquatic systems. In the greater Phoenix metropolitan area (GPMA), sections of the Salt and Gila Rivers have been the targets of active restoration through seeding, planting, and irrigation. At the same time, revegetation has occurred in some sections of the rivers in response to runoff from urban water sources (e.g., storm drains). This dataset catalogs the results of bird surveys conducted at several locations along the Salt River in and around the GPMA beginning in March 2013. Monitoring locations focus on reaches of the river with different characteristics, including: (1) urbanized with perennial water and actively restored (n=2 reaches), (2) urbanized with perennial water and passively restored (n=2 reaches), (3) urbanized with ephemeral water but not restored (n=2 reaches), and (4) non-urban reference areas with perennial water (n=1 reach). This program expands on bird monitoring that the CAP LTER conducts at other locations in and around the GPMA, and complements herpetological surveys that are performed at these locations along the Salt River where the bird surveys are performed. This is a long-term monitoring effort of the CAP LTER with on-going data collection.
DOI: 10.18112/openneuro.ds003037.v1.0.0
title: SUDMEX_TMS: The Mexican dataset of an rTMS clinical trial on cocaine use disorder patients.
DOI: 10.15468/8rqrtd
title: Bulbotrachystola, a substitute name for Centruroides Breuning, 1940 (Coleoptera: Cerambycidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vitali, Francesco, Yanega, Doug (2019): Bulbotrachystola, a substitute name for Centruroides Breuning, 1940 (Coleoptera: Cerambycidae). Zootaxa 4612 (3): 441, DOI: https://doi.org/10.11646/zootaxa.4612.3.11
DOI: 10.18112/openneuro.ds002936.v1.0.0
title: Neuroharmony sample exanple
DOI: 10.15468/ujj52p
title: Liolaemus jamesi (Boulenger, 1891): restriction of the type locality and holotype characterization (Squamata: Liolaemidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Troncoso-Palacios, Jaime, Gamboa, Margarita Ruiz De, Campbell, Patrick D. (2019): Liolaemus jamesi (Boulenger, 1891): restriction of the type locality and holotype characterization (Squamata: Liolaemidae). Zootaxa 4612 (3): 442-446, DOI: https://doi.org/10.11646/zootaxa.4612.3.12
DOI: 10.5517/ccdc.csd.cc1zvpvc
title: CCDC 1842914: Experimental Crystal Structure Determination

description: Related Article: Maxwell O. Nwokelo, David C. Izuogu, Obinna C. Okpareke, Collins U. Ibeji, Ebube E. Oyeka, Joseph R. Lane, Jonnie N. Asegbeloyin|2021|J.Mol.Struct.|1225|129019|doi:10.1016/j.molstruc.2020.129019
DOI: 10.5517/ccdc.csd.cc217yjs
title: CSD 1884475: Experimental Crystal Structure Determination

description: Related Article: R.M. Eremina, T.P. Gavrilova, E.M. Moshkina, I.F. Gilmutdinov, R.G. Batulin, V.V. Gurzhiy, V. Grinenko, D.S. Inosov|2020|J.Magn.Magn.Mater.|515|167262|doi:10.1016/j.jmmm.2020.167262
description: Related Article: T.P. Gavrilova, V.V. Gurzhiy, E.M. Moshkina, I.F. Gilmutdinov, A.G. Kiiamov, R.M. Eremina|2019|Physical Review B: covering condensed matter and materials physics|||
DOI: 10.6073/pasta/5427c7526f48424fcd8a50474ca20380
title: Tree Rings, Glacial Lakes State Park Site 2, Minnesota

description: Both increases in temperature and changes in precipitation may limit future tree growth, but rising atmospheric CO2 could offset some of these stressors through increased plant Water Use Efficiency (WUE). The net balance between the negative impacts of climate change and positive effects of CO2 on tree growth will be most important for systems already at plant physiological limits, where increased climate stress could drive mortality and shifts in range distribution. Here, we quantify the effects of climate, stand structure, and rising CO2 on both annual tree-ring growth increment and WUE at a savanna-forest boundary in the Upper Midwest United States. Taking a Bayesian hierarchical modelling approach, we find that plant WUE increased by ~13-25% over the course of the 20th century, but on average, tree-ring growth increments do not significantly increase. Consistent with higher WUE under increased CO2 and recent wetting, we observe a decrease in sensitivity of tree growth to annual precipitation, leading to 25-65% higher growth under dry conditions compared to trees of similar age and size in the past. However, an emerging interaction between summer maximum temperatures and annual precipitation diminishes the water-savings benefit under hot and dry conditions. Both the decrease in precipitation sensitivity, and the interaction between temperature and precipitation are strongest in open canopy microclimates, suggesting that stand structure may modulate response to future changes. Overall, we find that while higher WUE may provide some water savings benefits to growth under normal drought conditions, near-term future temperature increases combined with drought events could drive growth declines of over 50%. These products are used in the manucript, Heilman et al., 2020, Increased water use efficiency leads to decreased precipitation sensitivity of tree growth, but is offset by high temperatures. Submitted for review. The tree rings in this data package and those in msb-paleon packages 35-39 and 41-43 correspond with the isotope data in msb-paleon package 34. This material is based upon work supported by the National Science Foundation Doctoral Dissertation Improvement Grant no. DEB-1701897, the National Science Foundation PalEON MacroSystems Biology under grant no. DEB-1241874, and University of Notre Dame Center for Environmental Science and Technology (CEST)/Bayer Predoctoral Fellowship.
DOI: 10.5281/zenodo.3993679
title: Pathogenesis of Murine Cholestatic Liver Disease Associated with Sex-Related Differences in Hepatic Natural Killer Cell Subsets and Function

description: Two Supplemental figures for manuscript: "<strong>Pathogenesis of Murine Cholestatic Liver Disease Associated with Sex-Related Differences in Hepatic Natural Killer Cell Subsets and Function"</strong>
DOI: 10.5281/zenodo.3993666
title: Pathogenesis of Murine Cholestatic Liver Disease Associated with Sex-Related Differences in Hepatic Natural Killer Cell Subsets and Function

description: Two Supplemental figures for manuscript: "<strong>Pathogenesis of Murine Cholestatic Liver Disease Associated with Sex-Related Differences in Hepatic Natural Killer Cell Subsets and Function"</strong>
DOI: 10.25919/5f3ee683ae1c0
title: Parkes observations for project P885 semester 2020APRS_10

description: We propose to observe the magnetars 1E 1547.0-5408 and PSR J1622-4950 approximately weekly, to track their rotation, flux density, and polarisation, as we have long been doing through this project. The revolutionary UWL capabilities promise new opportunities to disentangle still mysterious radio emission mechanisms in magnetars. This promise is supported by the recent follow up of XTE J1810-197, again a radio magnetar after 10 years dormant, for which our observations with the UWL receiver are providing unique and tantalizing measurements of its radio spectrum and polarisation.
DOI: 10.21227/shhc-qk46
title: Pathology Imaging and Region of Interest Mask Definition

description: 70 images with a total of more than 2 GB of data have been employed for the experimental evaluation. All images are acquired at 24 bpp with 8 bits per pixel per component (bpppc). They depict various tissues of different sizes and stained with Hematoxylin and Eosin (H\&E) stain. The tissues employed in the experiments are skin fibroblast (SKNF), endometrial (END), lung (LNGF), embryonic stem cells (ES), kidney clear cell carcinoma (KIRC), pancreas (PANC), brain glioblastoma multiforme (GBM), colon adenocarcinoma (COAD), and lymphatic (LYMP).
DOI: 10.6073/pasta/a20a2311145bba28181cea354d9cb505
title: Tree Rings, Glacial Lakes State Park Site 3, Minnesota

description: Both increases in temperature and changes in precipitation may limit future tree growth, but rising atmospheric CO2 could offset some of these stressors through increased plant Water Use Efficiency (WUE). The net balance between the negative impacts of climate change and positive effects of CO2 on tree growth will be most important for systems already at plant physiological limits, where increased climate stress could drive mortality and shifts in range distribution. Here, we quantify the effects of climate, stand structure, and rising CO2 on both annual tree-ring growth increment and WUE at a savanna-forest boundary in the Upper Midwest United States. Taking a Bayesian hierarchical modelling approach, we find that plant WUE increased by ~13-25% over the course of the 20th century, but on average, tree-ring growth increments do not significantly increase. Consistent with higher WUE under increased CO2 and recent wetting, we observe a decrease in sensitivity of tree growth to annual precipitation, leading to 25-65% higher growth under dry conditions compared to trees of similar age and size in the past. However, an emerging interaction between summer maximum temperatures and annual precipitation diminishes the water-savings benefit under hot and dry conditions. Both the decrease in precipitation sensitivity, and the interaction between temperature and precipitation are strongest in open canopy microclimates, suggesting that stand structure may modulate response to future changes. Overall, we find that while higher WUE may provide some water savings benefits to growth under normal drought conditions, near-term future temperature increases combined with drought events could drive growth declines of over 50%. These products are used in the manucript, Heilman et al., 2020, Increased water use efficiency leads to decreased precipitation sensitivity of tree growth, but is offset by high temperatures. Submitted for review. The tree rings in this data package and those in msb-paleon packages 35-40 and 42-43 correspond with the isotope data in msb-paleon package 34.This material is based upon work supported by the National Science Foundation Doctoral Dissertation Improvement Grant no. DEB-1701897, the National Science Foundation PalEON MacroSystems Biology under grant no. DEB-1241874, and University of Notre Dame Center for Environmental Science and Technology (CEST)/Bayer Predoctoral Fellowship.
DOI: 10.6073/pasta/157f332c116923026be7d781c4f06956
title: Tree Rings, Mound Prairie Scientific and Natural Area, Minnesota

description: Both increases in temperature and changes in precipitation may limit future tree growth, but rising atmospheric CO2 could offset some of these stressors through increased plant Water Use Efficiency (WUE). The net balance between the negative impacts of climate change and positive effects of CO2 on tree growth will be most important for systems already at plant physiological limits, where increased climate stress could drive mortality and shifts in range distribution. Here, we quantify the effects of climate, stand structure, and rising CO2 on both annual tree-ring growth increment and WUE at a savanna-forest boundary in the Upper Midwest United States. Taking a Bayesian hierarchical modelling approach, we find that plant WUE increased by ~13-25% over the course of the 20th century, but on average, tree-ring growth increments do not significantly increase. Consistent with higher WUE under increased CO2 and recent wetting, we observe a decrease in sensitivity of tree growth to annual precipitation, leading to 25-65% higher growth under dry conditions compared to trees of similar age and size in the past. However, an emerging interaction between summer maximum temperatures and annual precipitation diminishes the water-savings benefit under hot and dry conditions. Both the decrease in precipitation sensitivity, and the interaction between temperature and precipitation are strongest in open canopy microclimates, suggesting that stand structure may modulate response to future changes. Overall, we find that while higher WUE may provide some water savings benefits to growth under normal drought conditions, near-term future temperature increases combined with drought events could drive growth declines of over 50%. These products are used in the manucript, Heilman et al., 2020, Increased water use efficiency leads to decreased precipitation sensitivity of tree growth, but is offset by high temperatures. Submitted for review. The tree rings in this data package and those in msb-paleon packages 35-41 and 43 correspond with the isotope data in msb-paleon package 34. This material is based upon work supported by the National Science Foundation Doctoral Dissertation Improvement Grant no. DEB-1701897, the National Science Foundation PalEON MacroSystems Biology under grant no. DEB-1241874, and University of Notre Dame Center for Environmental Science and Technology (CEST)/Bayer Predoctoral Fellowship.