cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1419679.v1
title: Possible role of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase in growth promotion of <i>Arabidopsis</i> seedlings by low levels of selenium

description: We explored functional significance of selenium (Se) in <i>Arabidopsis</i> physiology. Se at very low concentrations in cultivation exerted a considerable positive effect on <i>Arabidopsis</i> growth with no indication of oxidative stress, whereas Se at higher concentrations significantly suppressed the growth and brought serious oxidative damage. Respiration, ATP levels, and the activity of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (NAD-GAPDH) were enhanced in <i>Arabidopsis</i> grown in the medium containing 1.0 μM Se. Addition of an inhibitor of glutathione (GSH) synthesis to the medium abolished both of the Se-dependent growth promotion and NAD-GAPDH up-regulation. Assay of NAD-GAPDH purified from seedlings subjected to Se interventions raised the possibility of a direct connection between the activity of this enzyme and <i>Arabidopsis</i> growth. These results reveal that trace amounts of Se accelerate <i>Arabidopsis</i> growth, and suggest that this pro-growth effect of Se arises enhancing mitochondrial performance in a GSH-dependent manner, in which NAD-GAPDH may serve as a key regulator.
DOI: 10.6084/m9.figshare.1419657
title: High resolution locomotor time series in Japanese quail in a home-cage environment over a 6.5 day period (#4-group 2)

description: Each data point represents a 0.5s time interval (xi) in which the quail could either been ambulating (xi=1) or immobile (xi=0), over a 6.5 day period .The total number of data points is approximately 1.070.000. This time series has been shown to present both a fractal pattern, as well as ultradian and circadian rhythms. <strong>This is the data from quail number 4, of the second experimental group</strong>. In this experiment in a whole, the locomotor activity of 24 adult females quail (100-140 days old) was evaluated in a home-cage environment in a white wooden box measuring 40 x 40 x 40 cm (width x length x height, respectively) with a wire mesh floor. A metal bar wall divided the box in two same-size zones (feeding, nesting), and an opening served as a door allowing the bird to move freely between compartments. A video camera that automatically switched to infrared recording after lights were turned off was suspended 1.5m above the box. It was connected to a computer in an adjacent room and could be accessed remotely by experimenters. Testing began at approximately 1:00 PM, when 12 quail were placed in a box, and transported to a nearby experimental room. Each bird was then placed individually in the feeding zone of one of the boxes. During the following 6.5 days, the birds’ locomotor activity was continuously recorded. Testing ended at 9 PM the 7th day. Daily maintenance activities (egg collection, cleaning and feeding) were performed between 12 and 12:30 PM; the activity during this period was not included in time series, which in total implied a loss of 2% from the data set. Since only 12 birds could be tested simultaneously, two consecutive groups of 12 individuals were evaluated (group 1 and group 2). We used the commercially available ANY-MAZE@ computer program to register locomotion at 0.5 s intervals (xi). The locomotor time series (1.07e6 time intervals) of each bird was obtained by assigning a number one (xi = 1) if during the interval the bird was ambulating, or a zero (xi = 0) if immobile.
DOI: 10.6073/pasta/189ae801656d7253de0671412cbab843
title: Colored dissolved organic matter (CDOM) absorbance from lagoon, ocean, and river sites along the Alaska Beaufort Sea coast, 2019-ongoing

description: Multiple water types (river, lagoon, ocean) from the North Slope of Alaska and nearshore Beaufort Sea are sampled seasonally by the Beaufort Lagoon Ecosystems LTER (BLE LTER) Core Program to investigate biogeochemical linkages between terrestrial, lagoon, and open ocean ecosystems. Water samples from multiple depths are collected during full ice cover (April), ice break-up (mid-June to early July), and open water (late July and August) periods, filtered, and analyzed for light absorption spectra within 24 hours of collection. Wavelength-specific light absorption coefficients are reported between 200 and 800 nanometers. The data is organized in "long" or "tidy" format, with columns of station, date, wavelength, and absorption. Please see included MakeColumnsAsWavelengths.R, MakeColumnsAsDates.R, and ReshapeDataInExcel.txt for some common ways to reorganize the table for further CDOM analysis. Please see the Methods section for cautionary notes on data from sampling year 2019.
DOI: 10.6084/m9.figshare.1419662.v1
title: The A in SAFT: developing the contribution of association to the Helmholtz free energy within a Wertheim TPT1 treatment of generic Mie fluids

description: An accurate representation of molecular association is a vital ingredient of advanced equations of state (EOSs), providing a description of thermodynamic properties of complex fluids where hydrogen bonding plays an important role. The combination of the first-order thermodynamic perturbation theory (TPT1) of Wertheim for associating systems with an accurate description of the structural and thermodynamic properties of the monomer fluid forms the basis of the statistical associating fluid theory (SAFT) family of EOSs. The contribution of association to the free energy in SAFT and related EOSs is very sensitive to the nature of intermolecular potential used to describe the monomers and, crucially, to the accuracy of the representation of the thermodynamic and structural properties. Here we develop an accurate description of the association contribution for use within the recently developed SAFT-VR Mie framework for chain molecules formed from segments interacting through a Mie potential [T. Lafitte, A. Apostolakou, C. Avendaño, A, Galindo, C. S. Adjiman, E. A. Müller, and G. Jackson, J. Chem. Phys. <b>139</b>, 154504 (2013)]. As the Mie interaction represents a soft-core potential model, a method similar to that adopted for the Lennard-Jones potential [E. A. Müller and K. E. Gubbins, Ind. Eng. Chem. Res. <b>34</b>, 3662 (1995)] is employed to describe the association contribution to the Helmholtz free energy. The radial distribution function (RDF) of the Mie fluid (which is required for the evaluation of the integral at the heart of the association term) is determined for a broad range of thermodynamic conditions (temperatures and densities) using the reference hyper-netted chain (RHNC) integral-equation theory. The numerical data for the association kernel of Mie fluids with different association geometries are then correlated for a range of thermodynamic states to obtain a general expression for the association contribution which can be applied for varying values of the Mie repulsive exponent. The resulting SAFT-VR Mie EOS allows for a much improved description of the vapour-liquid equilibria and single-phase properties of associating fluids such as water, methanol, ammonia, hydrogen sulphide, and their mixtures. A comparison is also made between the theoretical predictions of the degree of association for water and the extent of hydrogen bonding obtained from molecular simulations of the SPC/E and TIP4P/2005 atomistic models.
DOI: 10.6084/m9.figshare.1419654
title: Cuke Particle Positions - 2068-2077 - Grid sites

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419657.v1
title: High resolution locomotor time series in Japanese quail in a home-cage environment over a 6.5 day period (#4-group 2)

description: Each data point represents a 0.5s time interval (xi) in which the quail could either been ambulating (xi=1) or immobile (xi=0), over a 6.5 day period .The total number of data points is approximately 1.070.000. This time series has been shown to present both a fractal pattern, as well as ultradian and circadian rhythms. <strong>This is the data from quail number 4, of the second experimental group</strong>. In this experiment in a whole, the locomotor activity of 24 adult females quail (100-140 days old) was evaluated in a home-cage environment in a white wooden box measuring 40 x 40 x 40 cm (width x length x height, respectively) with a wire mesh floor. A metal bar wall divided the box in two same-size zones (feeding, nesting), and an opening served as a door allowing the bird to move freely between compartments. A video camera that automatically switched to infrared recording after lights were turned off was suspended 1.5m above the box. It was connected to a computer in an adjacent room and could be accessed remotely by experimenters. Testing began at approximately 1:00 PM, when 12 quail were placed in a box, and transported to a nearby experimental room. Each bird was then placed individually in the feeding zone of one of the boxes. During the following 6.5 days, the birds’ locomotor activity was continuously recorded. Testing ended at 9 PM the 7th day. Daily maintenance activities (egg collection, cleaning and feeding) were performed between 12 and 12:30 PM; the activity during this period was not included in time series, which in total implied a loss of 2% from the data set. Since only 12 birds could be tested simultaneously, two consecutive groups of 12 individuals were evaluated (group 1 and group 2). We used the commercially available ANY-MAZE@ computer program to register locomotion at 0.5 s intervals (xi). The locomotor time series (1.07e6 time intervals) of each bird was obtained by assigning a number one (xi = 1) if during the interval the bird was ambulating, or a zero (xi = 0) if immobile.
DOI: 10.6084/m9.figshare.1419679.v2
title: Possible role of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase in growth promotion of <i>Arabidopsis</i> seedlings by low levels of selenium

description: We explored functional significance of selenium (Se) in <i>Arabidopsis</i> physiology. Se at very low concentrations in cultivation exerted a considerable positive effect on <i>Arabidopsis</i> growth with no indication of oxidative stress, whereas Se at higher concentrations significantly suppressed the growth and brought serious oxidative damage. Respiration, ATP levels, and the activity of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (NAD-GAPDH) were enhanced in <i>Arabidopsis</i> grown in the medium containing 1.0 μM Se. Addition of an inhibitor of glutathione (GSH) synthesis to the medium abolished both of the Se-dependent growth promotion and NAD-GAPDH up-regulation. Assay of NAD-GAPDH purified from seedlings subjected to Se interventions raised the possibility of a direct connection between the activity of this enzyme and <i>Arabidopsis</i> growth. These results reveal that trace amounts of Se accelerate <i>Arabidopsis</i> growth, and suggest that this pro-growth effect of Se arises enhancing mitochondrial performance in a GSH-dependent manner, in which NAD-GAPDH may serve as a key regulator.
DOI: 10.6084/m9.figshare.1419679.v4
title: Possible role of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase in growth promotion of <i>Arabidopsis</i> seedlings by low levels of selenium

description: We explored functional significance of selenium (Se) in <i>Arabidopsis</i> physiology. Se at very low concentrations in cultivation exerted a considerable positive effect on <i>Arabidopsis</i> growth with no indication of oxidative stress, whereas Se at higher concentrations significantly suppressed the growth and brought serious oxidative damage. Respiration, ATP levels, and the activity of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (NAD-GAPDH) were enhanced in <i>Arabidopsis</i> grown in the medium containing 1.0 μM Se. Addition of an inhibitor of glutathione (GSH) synthesis to the medium abolished both of the Se-dependent growth promotion and NAD-GAPDH up-regulation. Assay of NAD-GAPDH purified from seedlings subjected to Se interventions raised the possibility of a direct connection between the activity of this enzyme and <i>Arabidopsis</i> growth. These results reveal that trace amounts of Se accelerate <i>Arabidopsis</i> growth, and suggest that this pro-growth effect of Se arises enhancing mitochondrial performance in a GSH-dependent manner, in which NAD-GAPDH may serve as a key regulator.
DOI: 10.6084/m9.figshare.1419679.v3
title: Possible role of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase in growth promotion of <i>Arabidopsis</i> seedlings by low levels of selenium

description: We explored functional significance of selenium (Se) in <i>Arabidopsis</i> physiology. Se at very low concentrations in cultivation exerted a considerable positive effect on <i>Arabidopsis</i> growth with no indication of oxidative stress, whereas Se at higher concentrations significantly suppressed the growth and brought serious oxidative damage. Respiration, ATP levels, and the activity of NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (NAD-GAPDH) were enhanced in <i>Arabidopsis</i> grown in the medium containing 1.0 μM Se. Addition of an inhibitor of glutathione (GSH) synthesis to the medium abolished both of the Se-dependent growth promotion and NAD-GAPDH up-regulation. Assay of NAD-GAPDH purified from seedlings subjected to Se interventions raised the possibility of a direct connection between the activity of this enzyme and <i>Arabidopsis</i> growth. These results reveal that trace amounts of Se accelerate <i>Arabidopsis</i> growth, and suggest that this pro-growth effect of Se arises enhancing mitochondrial performance in a GSH-dependent manner, in which NAD-GAPDH may serve as a key regulator.
DOI: 10.6084/m9.figshare.1419654.v1
title: Cuke Particle Positions - 2068-2077

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419654.v2
title: Cuke Particle Positions - 2068-2077

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419654.v3
title: Cuke Particle Positions - 2068-2077

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419603
title: Inhibitors

description: The relationship between 25 Plasmepsin II inhibitor compounds activities and eleven structural and chemical properties was explored and several models proposed.
DOI: 10.6084/m9.figshare.1419603.v1
title: Inhibitors

description: The relationship between 25 Plasmepsin II inhibitor compounds activities and eleven structural and chemical properties was explored and several models proposed.
DOI: 10.6084/m9.figshare.1419600
title: Descriptors

description: The relationship between 25 Plasmepsin II inhibitor compounds activities and eleven structural and chemical properties was explored and several models proposed.
DOI: 10.6084/m9.figshare.1419600.v1
title: Descriptors

description: The relationship between 25 Plasmepsin II inhibitor compounds activities and eleven structural and chemical properties was explored and several models proposed.
DOI: 10.6084/m9.figshare.1419654.v4
title: Cuke Particle Positions - 2068-2077

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419590
title: ReproPhylo Git demonstration

description: A demonstration of Git integration in ReproPhylo
DOI: 10.6084/m9.figshare.1419589
title: Orthotropic Femur Model

description: Orthotropic Finite Element Femur Model Open-source. Please reference the following publication if you use this model<br>Authors: Diogo M. Geraldes, Luca Modenese and Andrew T. M. Phillips Year: 2015 Title: Consideration of multiple load cases is critical in modelling orthotropic bone adaptation in the femur<br>Journal: Biomechanics and Modelling in Mechanobiology<br>DOI: 10.1007/s10237-015-0740-7 If you have any questions, please do not hesitate in contacting the corresponding author: geraldes[at]imperial[dot]ac[dot]uk
DOI: 10.6084/m9.figshare.1419654.v5
title: Cuke Particle Positions - 2068-2077

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419586
title: Yokohama Specie Bank flow-of-funds graphs 1

description: Illustrations of the flow-of-funds within the branch network of the Yokohama Specie Bank, 1893-06 until 1908-06. Data have been taken from the semestrially published 半季報告. Illustrations were created by means of the UCInet-software package (analytic technologies), and were made using the UCInet graph-layout algorythm, using node repulsion and Gower scaling.
DOI: 10.6084/m9.figshare.1419586.v1
title: Yokohama Specie Bank flow-of-funds graphs 1

description: Illustrations of the flow-of-funds within the branch network of the Yokohama Specie Bank, 1893-06 until 1908-06. Data have been taken from the semestrially published 半季報告. Illustrations were created by means of the UCInet-software package (analytic technologies), and were made using the UCInet graph-layout algorythm, using node repulsion and Gower scaling.
DOI: 10.6084/m9.figshare.1419590.v2
title: ReproPhylo Git demonstration

description: A demonstration of Git integration in ReproPhylo
DOI: 10.6084/m9.figshare.1419654.v6
title: Cuke Particle Positions - 2068-2077

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released
DOI: 10.6084/m9.figshare.1419590.v1
title: ReproPhylo Git demnstration

description: A demonstration of Git integration in ReproPhylo
DOI: 10.6084/m9.figshare.1419492
title: Tracking Outbreaks of Febrile Infectious Diseases in India Using Google Trends

description: Dataset comparing outbreaks of diseases with search volume on Google.
DOI: 10.6084/m9.figshare.1419589.v4
title: Orthotropic Femur Model

description: Orthotropic Finite Element Femur Model Open-source. Please reference the following publication if you use this model<br>Authors: Diogo M. Geraldes, Luca Modenese and Andrew T. M. Phillips Year: 2015 Title: Consideration of multiple load cases is critical in modelling orthotropic bone adaptation in the femur<br>Journal: Biomechanics and Modelling in Mechanobiology<br>DOI: to be determined If you have any questions, please do not hesitate in contacting the corresponding author:<br>geraldes[at]imperial[dot]ac[dot]uk
DOI: 10.6084/m9.figshare.1419489
title: High resolution locomotor time series in Japanese quail in a home-cage environment over a 6.5 day period (quail #2-group 2)

description: Each data point represents a 0.5s time interval (xi) in which the quail could either been ambulating (xi=1) or immobile (xi=0), over a 6.5 day period .The total number of data points is approximately 1.070.000. This time series has been shown to present both a fractal pattern, as well as ultradian and circadian rhythms. <strong>This is the data from quail number 2, of the second experimental group.</strong> In this experiment in a whole, the locomotor activity of 24 adult females quail (100-140 days old) was evaluated in a home-cage environment in a white wooden box measuring 40 x 40 x 40 cm (width x length x height, respectively) with a wire mesh floor. A metal bar wall divided the box in two same-size zones (feeding, nesting), and an opening served as a door allowing the bird to move freely between compartments. A video camera that automatically switched to infrared recording after lights were turned off was suspended 1.5m above the box. It was connected to a computer in an adjacent room and could be accessed remotely by experimenters. Testing began at approximately 1:00 PM, when 12 quail were placed in a box, and transported to a nearby experimental room. Each bird was then placed individually in the feeding zone of one of the boxes. During the following 6.5 days, the birds’ locomotor activity was continuously recorded. Testing ended at 9 PM the 7th day. Daily maintenance activities (egg collection, cleaning and feeding) were performed between 12 and 12:30 PM; the activity during this period was not included in time series, which in total implied a loss of 2% from the data set. Since only 12 birds could be tested simultaneously, two consecutive groups of 12 individuals were evaluated (group 1 and group 2). We used the commercially available ANY-MAZE@ computer program to register locomotion at 0.5 s intervals (xi). The locomotor time series (1.07e6 time intervals) of each bird was obtained by assigning a number one (xi = 1) if during the interval the bird was ambulating, or a zero (xi = 0) if immobile.
DOI: 10.6084/m9.figshare.1419492.v1
title: Tracking Outbreaks of Febrile Infectious Diseases in India Using Google Trends

description: Dataset comparing outbreaks of diseases with search volume on Google.