cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12450590
title: Additional file 1 of PVAmpliconFinder: a workflow for the identification of human papillomaviruses from high-throughput amplicon sequencing

description: Additional file 1: Supplementary Table S1. Info file. Supplementary Table S2. Taxonomic classification of the reads identified in the overall NGS experiment by MegaBlast alignment. Supplementary Table S3. Taxonomic classification of the reads identified in the overall NGS experiment by BlastN alignment. Supplementary Table S4. Taxonomic classification of the reads identified in the overall NGS experiment by RaxML-EPA. Supplementary Table S5. NGS metrics, summary classification of putative known and putative new virus based on the three methodologies. Supplementary Table S6. Putative known Papillomaviridae-related sequences detected in the NGS experiment. Supplementary Table S7. Performances using non-indexed NCBI database
DOI: 10.6084/m9.figshare.12450590.v1
title: Additional file 1 of PVAmpliconFinder: a workflow for the identification of human papillomaviruses from high-throughput amplicon sequencing

description: Additional file 1: Supplementary Table S1. Info file. Supplementary Table S2. Taxonomic classification of the reads identified in the overall NGS experiment by MegaBlast alignment. Supplementary Table S3. Taxonomic classification of the reads identified in the overall NGS experiment by BlastN alignment. Supplementary Table S4. Taxonomic classification of the reads identified in the overall NGS experiment by RaxML-EPA. Supplementary Table S5. NGS metrics, summary classification of putative known and putative new virus based on the three methodologies. Supplementary Table S6. Putative known Papillomaviridae-related sequences detected in the NGS experiment. Supplementary Table S7. Performances using non-indexed NCBI database
DOI: 10.6084/m9.figshare.12450548
title: Additional file 9 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 9. Mapping of motility operon genes and NCBI accessions based on Neville et al. [25]. The flgM/csrA operon coordinates/accessions could not be found in Neville et al., but could be inferred based on gene names provided by prokka. In contrast to what is stated in Neville et al., we could not find the flgM/csrA operon in proximity to the flaG/flgN operon in E. rectale.
DOI: 10.6084/m9.figshare.12450542
title: Additional file 8 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 8. Publically available datasets containing shotgun metagenomes from non-human primates used in this study.
DOI: 10.6084/m9.figshare.12450542.v1
title: Additional file 8 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 8. Publically available datasets containing shotgun metagenomes from non-human primates used in this study.
DOI: 10.6084/m9.figshare.12450548.v1
title: Additional file 9 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 9. Mapping of motility operon genes and NCBI accessions based on Neville et al. [25]. The flgM/csrA operon coordinates/accessions could not be found in Neville et al., but could be inferred based on gene names provided by prokka. In contrast to what is stated in Neville et al., we could not find the flgM/csrA operon in proximity to the flaG/flgN operon in E. rectale.
DOI: 10.6084/m9.figshare.12450536
title: Additional file 7 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 7. Annotations of gene calls in genomic islands found in ErEurope strains.
DOI: 10.6084/m9.figshare.12450530
title: Additional file 6 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 6. Differentially abundant KO groups between ErEurope and ErEurasia. A positive effect size means a given KO group is more abundant (on average) in ErEurasia. P-values were calculated using a two-sided Wilcoxon test. Q-values represent FDR-corrected (at 5%) p-values corrected using the Benjamini-Hochberg method.
DOI: 10.6084/m9.figshare.12450536.v1
title: Additional file 7 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 7. Annotations of gene calls in genomic islands found in ErEurope strains.
DOI: 10.6084/m9.figshare.12450521
title: Additional file 5 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 5. Summary of datasets used in this study.
DOI: 10.6084/m9.figshare.12450530.v1
title: Additional file 6 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 6. Differentially abundant KO groups between ErEurope and ErEurasia. A positive effect size means a given KO group is more abundant (on average) in ErEurasia. P-values were calculated using a two-sided Wilcoxon test. Q-values represent FDR-corrected (at 5%) p-values corrected using the Benjamini-Hochberg method.
DOI: 10.6084/m9.figshare.12450509
title: Additional file 4 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 4. Metadata for all samples used in this study.
DOI: 10.6084/m9.figshare.12450521.v1
title: Additional file 5 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 5. Summary of datasets used in this study.
DOI: 10.6084/m9.figshare.12450509.v1
title: Additional file 4 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 4. Metadata for all samples used in this study.
DOI: 10.6084/m9.figshare.12450497
title: Additional file 3 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 3. Description of isolate genomes used in this study.
DOI: 10.6084/m9.figshare.12450497.v1
title: Additional file 3 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 3. Description of isolate genomes used in this study.
DOI: 10.6084/m9.figshare.12450482
title: Additional file 2 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 2. Quality characteristics of 47 manually-curated reference (MCR) genomes used as references for the reference-based binning approach employed in this work to generate E. rectale genomes from metagenomes.
DOI: 10.6084/m9.figshare.12450482.v1
title: Additional file 2 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

description: Additional file 2. Quality characteristics of 47 manually-curated reference (MCR) genomes used as references for the reference-based binning approach employed in this work to generate E. rectale genomes from metagenomes.
DOI: 10.6084/m9.figshare.12450410
title: Additional file 1 of The influence of corruption and governance in the delivery of frontline health care services in the public sector: a scoping review of current and future prospects in low and middle-income countries of south and south-east Asia

description: Additional file 1. Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR).
DOI: 10.6084/m9.figshare.12450410.v1
title: Additional file 1 of The influence of corruption and governance in the delivery of frontline health care services in the public sector: a scoping review of current and future prospects in low and middle-income countries of south and south-east Asia

description: Additional file 1. Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR).
DOI: 10.6084/m9.figshare.12450197
title: Additional file 3 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 3: Table S3. Preliminary investigation of common and related differentially expressed genes of each microarray dataset.
DOI: 10.6084/m9.figshare.12450191
title: Additional file 1 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 1: Table S1. The function summaryAffyRNAdeg of Bioconductor package produced a single summary-statistic for each array in the batch dataset.
DOI: 10.6084/m9.figshare.12450194
title: Additional file 2 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 2: Table S2. List of databases, software, and tools used in this study.
DOI: 10.6084/m9.figshare.12450197.v2
title: Additional file 3 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 3: Table S3. Preliminary investigation of common and related differentially expressed genes of each microarray dataset.
DOI: 10.6084/m9.figshare.12450179
title: Additional file 3 of A microbubble-sparged yeast propagation–fermentation process for bioethanol production

description: Additional file 3. RNA-seq fold changes.
DOI: 10.6084/m9.figshare.12450191.v2
title: Additional file 1 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 1: Table S1. The function summaryAffyRNAdeg of Bioconductor package produced a single summary-statistic for each array in the batch dataset.
DOI: 10.6084/m9.figshare.12450194.v2
title: Additional file 2 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 2: Table S2. List of databases, software, and tools used in this study.
DOI: 10.6084/m9.figshare.12450197.v1
title: Additional file 3 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 3: Table S3. Preliminary investigation of common and related differentially expressed genes of each microarray dataset.
DOI: 10.6084/m9.figshare.12450179.v1
title: Additional file 3 of A microbubble-sparged yeast propagation–fermentation process for bioethanol production

description: Additional file 3. RNA-seq fold changes.
DOI: 10.6084/m9.figshare.12450191.v1
title: Additional file 1 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 1: Table S1. The function summaryAffyRNAdeg of Bioconductor package produced a single summary-statistic for each array in the batch dataset.
DOI: 10.6084/m9.figshare.12450173
title: Additional file 2 of A microbubble-sparged yeast propagation–fermentation process for bioethanol production

description: Additional file 2. Microarray fold changes.
DOI: 10.6084/m9.figshare.12450173.v1
title: Additional file 2 of A microbubble-sparged yeast propagation–fermentation process for bioethanol production

description: Additional file 2. Microarray fold changes.
DOI: 10.6084/m9.figshare.12450194.v1
title: Additional file 2 of Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach

description: Additional file 2: Table S2. List of databases, software, and tools used in this study.
DOI: 10.6084/m9.figshare.12449699
title: Table S2 - Dataset from Shifting systems—prerequisites for the application of quantitative fatty acid signature analysis in soil food webs

description: Table S2: Feeding Experiment Dataset. Contains Total Lipid Fatty Acid (TLFA) signatures of the single and mixed diet setups as well as the signatures of all three collembola species fed on those diets. Given are the individual signature biomass in ng / MOL dry weight.
DOI: 10.6084/m9.figshare.12449699.v1
title: Table S2 - Dataset from Shifting systems—prerequisites for the application of quantitative fatty acid signature analysis in soil food webs

description: Table S2: Feeding Experiment Dataset. Contains Total Lipid Fatty Acid (TLFA) signatures of the single and mixed diet setups as well as the signatures of all three collembola species fed on those diets. Given are the individual signature biomass in ng / MOL dry weight.
DOI: 10.6084/m9.figshare.12449672
title: Oregon Chlamydia and Population by County, 2010-2018

description: Rows represent Oregon's 36 counties. Columns include population size and reported chlamydia cases from 2010 to 2018.<br>
DOI: 10.6084/m9.figshare.12449663
title: Air pollutants data in 2020

description: This dataset includes the following data: (1) Daily-average mass concentrations of PM<sub>2.5</sub>, SO<sub>2</sub>, NO<sub>2</sub>, CO and O<sub>3</sub> at the air quality monitoring network in China from January to February in 2020; (2) Comprehensive measurements at Dianshanhu supersite in Shanghai, which provided concentrations of water-soluble ions and carbonaceous aerosols.
DOI: 10.6084/m9.figshare.12449672.v1
title: Oregon Chlamydia and Population by County, 2010-2018

description: Rows represent Oregon's 36 counties. Columns include population size and reported chlamydia cases from 2010 to 2018.<br>
DOI: 10.6084/m9.figshare.12449642
title: Daguan

description: Shapefile of deformation in Daguan area.
DOI: 10.6084/m9.figshare.12449645
title: annotation-gtf

description: GENCODE and FANTOM
DOI: 10.5517/ccdc.csd.cc1kgbq2
title: CCDC 1443754: Experimental Crystal Structure Determination

description: Related Article: Jia-Li Ye, Xin-Bo Zhou, Su-Xiang Wu, Meng-Ying Sun, Jian-Ming Gu, Xiu-Rong Hu|2016|Yaoxue Xuebao|51|1759|
DOI: 10.6084/m9.figshare.12449639
title: Geographical distribution of removed data from Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

description: Geographical analysis of removed data for 3 primers/probe with the highest frequency
DOI: 10.5517/ccdc.csd.cc1kgbr3
title: CCDC 1443755: Experimental Crystal Structure Determination

description: Related Article: Jia-Li Ye, Xin-Bo Zhou, Su-Xiang Wu, Meng-Ying Sun, Jian-Ming Gu, Xiu-Rong Hu|2016|Yaoxue Xuebao|51|1759|
DOI: 10.6084/m9.figshare.12449642.v1
title: Daguan

description: Shapefile of deformation in Daguan area.
DOI: 10.6084/m9.figshare.12449630
title: Acknowledgement table from Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

description: List of accession numbers and authors of the sequences
DOI: 10.6084/m9.figshare.12449633
title: Geographical distribution of included sequence dataset and mismatches from Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

description: Geographical data used to draw graphs in figure 4
DOI: 10.6084/m9.figshare.12449639.v1
title: Geographical distribution of removed data from Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

description: Geographical analysis of removed data for 3 primers/probe with the highest frequency
DOI: 10.6084/m9.figshare.12449615
title: demographic, identification, sensitivity test data

description: demographic, identification, sensitivity test to fluconazole, itraconazole and amphpotricin data of different <i>candida</i> species isolated from different Khartoum state hospitals (2017-2018).<br>
DOI: 10.6084/m9.figshare.12449630.v1
title: Acknowledgement table from Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

description: List of accession numbers and authors of the sequences
DOI: 10.5517/ccdc.csd.cc2099c0
title: CCDC 1855981: Experimental Crystal Structure Determination

description: Related Article: Balakrishna Aegurla, Nisha Jarwal, Rama Krishna Peddinti|2020|Org.Biomol.Chem.|18|6100|doi:10.1039/D0OB01200A
DOI: 10.6084/m9.figshare.12449633.v1
title: Geographical distribution of included sequence dataset and mismatches from Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

description: Geographical data used to draw graphs in figure 4
DOI: 10.6084/m9.figshare.12449579
title: Provenance record of late Mesoproterozoic to early Neoproterozoic units, west Hainan, South China, and implications for Rodinia reconstruction

description: The Supporting Information contains three figures in JPG, three tables in Word and two dataset in Excel file. Details ,<br>Figure S1, Detrital zircon CL images with age and εHf (t) values for the representative samples from the Shilu Group and Shihuiding Formation in west Hainan. Figure S2, <b>P</b>lots of Al2O3 and K2O + Na2O vs. SiO2 (a,b) and (b) TiO2 and Fe2O3T vs. Al2O3 (c,d) for the Shilu Group and Shihuiding Formation samples in west Hainan. The compositions of PAAS (Post Archean Australia Shale, Taylor and McLennan, 1985) and UCC (Upper Continental Crust, Rudnick and Gao, 2003) are also shown diagrams for comparison. Figure S3, Source rock discrimination diagrams for the metasedimentary rocks on (a) 100*TiO2/Al2O3 vs. 100*TiO2/Fe2O3T and (b) (La/Yb)n vs. Eu*/Eu. End members, including average Proterozoic felsic volcanic rocks, andesite, basalt, granite and TTG from Condie, 1993, are plotted for comparison.Table S1, Major oxides and trace elemental analytical results for the represent samples from the Shilu Group and Shihuiding Formation in west Hainan.Table S2, Zircon U–Pb dating results for the representative samples from the Shilu Group and Shihuiding Formation in west Hainan<br>Table S3, Zircon Lu-Hf isotopic composition for the representative samples from the Shilu Group and Shihuiding Formation in west Hainan (A decay constant for <sup>176</sup>Lu of 1.865 ± 0.015 × 10<sup>−11</sup>/year is used for calculating ε<sub>Hf</sub> (t) values and Hf model ages).Data Set S1,Published zircon U-Pb geochronological data of Meso-Neoproterozoic samples from Hainan, the Yangtze Block, India and western Laurentia. Data Set S2, Published zircon Hf isotopic data of Meso-Neoproterozoic samples from Hainan, the Yangtze and Cathaysia Block.<br>
DOI: 10.6084/m9.figshare.12449603
title: CAPS - Case Management-EN (2).xlsx

description: Patient status for telehealth management in a Community Psychosocial Center in Brazil
DOI: 10.6084/m9.figshare.12449615.v1
title: demographic, identification, sensitivity test data

description: demographic, identification, sensitivity test to fluconazole, itraconazole and amphpotricin data of different <i>candida</i> species isolated from different Khartoum state hospitals (2017-2018).<br>
DOI: 10.6084/m9.figshare.12449603.v2
title: CAPS - Case Management-EN (2).xlsx

description: Patient status for telehealth management in a Community Psychosocial Center in Brazil
DOI: 10.5517/ccdc.csd.cc227jtp
title: CCDC 1913872: Experimental Crystal Structure Determination

description: Related Article: Feng-Hua Zhang, Fa-Jian Zhang, Mao-Lin Li, Jian-Hua Xie, Qi-Lin Zhou|2020|Nat. Catal.|3|621|doi:10.1038/s41929-020-0474-5
DOI: 10.6084/m9.figshare.12449603.v1
title: CAPS - Case Management-EN (2).xlsx

description: Patient status for telehealth management in a Community Psychosocial Center in Brazil
DOI: 10.6084/m9.figshare.12449306
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-15876to JVASP-16693)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449309
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-16694 to JVASP-17851)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449480
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-74995 to JVASP-80363)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449480.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-74995 to JVASP-80363)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449153
title: Seed plant phylogeny

description: Seed plant chloroplast phylogeny
DOI: 10.6084/m9.figshare.12449147
title: Spectral Dataset

description: 16,000+ leaf spectra for vascular plants
DOI: 10.6084/m9.figshare.12449078
title: H3K27ac Signal Track for K562, Jurkat, hmTERT-HME1, H9-hESC, and NCI-H1437 Cells.

description: Genome-wide signal tracks for each sample were generated in two stages: (i) assess ChIP–seq quality and obtain the predominant fragment length using phantompeakqualtools (https://code.google.com/archive/p/phantompeakqualtools/); (ii) use align2rawsignal (https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki) to generate signal track (parameters: -n = 5, -k = epanechnikov, -l = [frag-ment length from step (i)], -w = 150, -f = 0).
DOI: 10.6084/m9.figshare.12449153.v1
title: seed plant phylogeny

description: Seed plant chloroplast phylogeny
DOI: 10.6084/m9.figshare.12449042
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-14187 to JVASP-15003)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449048
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-15004 to JVASP-15875)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449078.v1
title: H3K27ac Signal Track for K562, Jurkat, hmTERT-HME1, H9-hESC, and NCI-H1437 Cells.

description: Genome-wide signal tracks for each sample were generated in two stages: (i) assess ChIP–seq quality and obtain the predominant fragment length using phantompeakqualtools (https://code.google.com/archive/p/phantompeakqualtools/); (ii) use align2rawsignal (https://code.google.com/archive/p/align2rawsignal/wikis/Method.wiki) to generate signal track (parameters: -n = 5, -k = epanechnikov, -l = [frag-ment length from step (i)], -w = 150, -f = 0).
DOI: 10.6084/m9.figshare.12449042.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-14187 to JVASP-15003)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12448997
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-12330 to JVASP-14180)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12449153.v2
title: Seed plant phylogeny

description: Seed plant chloroplast phylogeny