cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kc260
title: Data from: Preoperative characteristics of working-age patients undergoing total knee arthroplasty

description: Objective Total Knee Arthroplasty (TKA) is performed more in working-age
 (&lt;65 years) patients. Until now, research in this patient
 population has been conducted mainly among retired (≥65 years) patients.
 Aim of this study was therefore to describe demographic, physical,
 psychological and social characteristics of working TKA patients and to
 subsequently compare these characteristics with retired TKA patients and
 the general population. Methods A cross-sectional analysis. Preoperative
 data of 152 working TKA patients was used. These data were compared with
 existing data of retired TKA patients in hospital registers and with
 normative values from literature on the general population. Demographic,
 physical, psychological and social (including work) characteristics were
 analyzed. Results The majority (83.8%) of working TKA patients was
 overweight (42.6%) or obese (41.2%), a majority (72.4%) was dealing with
 two or more comorbidities, and most (90%) had few depressive symptoms.
 Mean physical activity level was 2950 minutes per week. Compared to the
 retired TKA population, working TKA patients perceived significantly more
 stiffness and better physical functioning and vitality, were more
 physically active, and perceived better mental health. Compared to the
 general population working TKA patients perceived worse physical
 functioning, worse physical health and better mental health, and worked
 fewer hours. Conclusion This study shows that a majority of working TKA
 patients are overweight/obese, have multiple comorbidities, but are highly
 active in light-intensity activities and have few depressive symptoms.
 Working patients scored overall better on preoperative characteristics
 than retired patients, and except for physical activity scored overall
 worse than the general population.
description: Preoperative data of TKA
 patientsdatabase_plosone_0709_anomized.sav
DOI: 10.15468/xdtg3x
title: Bygdøylokket åpen grunnlendt kalkmark

description: Funndata fra artsregistrering ved Bybdøylokket, Oslo kommune.Multimediefilen inneholder én-til-mange-lenker til bilder for hver post i forekomstfilen (når tilgjengelig)
DOI: 10.5061/dryad.p48k7
title: Data from: Testing weed risk assessment paradigms: intraspecific differences in performance and naturalisation risk outweigh interspecific differences in alien Brassica

description: 1.Risk assessments of alien species are usually conducted at species
 level, assuming that all individuals of a given species pose similar
 risks. However, this may not be the case if there is substantial
 within-species variation that could influence invasion success. 2.We used
 a seed addition experiment, comprising 25 taxonomically stratified
 varieties of three Brassica species introduced to roadside habitats in
 Canterbury, New Zealand, to quantify variation in performance among
 species, subspecies and varieties. We aimed to assess if species was the
 most appropriate taxonomic level at which to evaluate invasion risk.
 3.Differences among varieties within species explained approximately 30
 times more of the variation in performance (number of individuals/quadrat)
 than differences among species. Some of the variation among varieties was
 attributable to differences in seed viability. 4.Nevertheless, differences
 among taxonomic groups explained only 7% of the total variation in
 performance; 28% was attributable to differences among plots, reflecting
 broad-scale environmental variation, while 65% was attributable to
 differences among quadrats nested within plots, highlighting the
 importance of fine-scale variation in the availability of suitable
 microsites. 5.Policy Implications. Our seed addition experiment quantified
 variation in performance of 25 taxonomically stratified Brassica taxa
 introduced to roadside habitats. Varieties (nested within species)
 differed in performance far more than did species. This suggests risk
 assessments carried out at species level may overlook important
 subspecific variation in invasion risk. This is particularly true for
 conventionally bred and genetically modified species, which may contain
 taxa posing risks different to that at which the species is assessed.
 Consideration should be given to subjecting unassessed subspecies and
 varieties of plants to risk assessments similar to those applied to
 species.
description: Seed sowing
 experimentData recording counts
 from seed sowing experiment of 25 Brassica species in Canterbury NZ. Also
 includes biotic and abiotic covariate data.common
 garden.xlsxburied_germSeed survival data, after burial for 1 year. Wholed = dead seed, wholea = alive seedclimateClimatic data for each plot in the seed sowing experiment. Mean: winter precipitation, summer precipitation, January temp, July temp and annual temperature.common garden 2Second seed sowing experiment (2012). Includes 2 x propagule pressure treatments (25 and 250 seeds per 25 x 25 cm plot) and 2 disturbance treatments (u = control, d= all vegetation removed from plot with mattock prior to sowing)germinationviability data for seed used in seed sowing experimentsseed_weightSeed weight data for seeds used in sowing experimentsspeciesSpecies, subspecies and variety of the 25 taxa used in the seed sowing experiments. Species ID field links to other data sets in this package.
DOI: 10.5061/dryad.5772v
title: Data from: Prevalence of preoperative anemia, abnormal mean corpuscular volume and red cell distribution width among surgical patients in Singapore, and their influence on one year mortality

description: Introduction Preoperative anemia and high red cell distribution width
 (RDW) are associated with higher perioperative mortality. Conditions with
 high RDW levels can be categorized by mean corpuscular volume (MCV). The
 relationship between RDW, anemia and MCV may explain causality between
 high RDW levels and outcomes. We aim to establish the prevalence of
 preoperative anemia and distribution of RDW and MCV among pre-surgical
 patients in Singapore. In addition, we aim to investigate the association
 between preoperative anemia, RDW and MCV levels with one-year mortality
 after surgery. Methods Retrospective review of 97,443 patients aged
 &gt;= 18 years who underwent cardiac and non-cardiac surgeries under
 anesthesia between January 2012 and October 2016. Patient demographics,
 comorbidities, priority of surgery, surgical risk classification,
 perioperative transfusion, preoperative hemoglobin, RDW, MCV were
 collected. WHO anemia classification was used. High RDW was defined as
 &gt;15.7%. Multivariate regression analyses were done to identify
 independent risk factors for mild or moderate/severe anemia and high RDW
 (&gt;15.7). Multivariate cox regression analysis was done to determine
 the effect of preoperative anemia, abnormal RDW and MCV values on 1-year
 mortality. Results Our cohort comprised of 94.7% non-cardiac and 5.3%
 cardiac surgeries. 88.7% of patients achieved 1 year follow-up. Anemia
 prevalence was 27.8% - mild anemia 15.3%, moderate anemia 12.0% and severe
 anemia 0.5%. One-year mortality was 3.5%. Anemia increased with age in
 males, while in females, anemia was more prevalent between 18-49 years and
 &gt;= 70 years. Most anemics were normocytic. Normocytosis and
 macrocytosis increased with age, while microcytosis decreased with age.
 Older age, male gender, higher ASA-PS score, anemia (mild- aHR 1.98;
 moderate/severe aHR 2.86), macrocytosis (aHR 1.47), high RDW (aHR 2.34),
 moderate-high risk surgery and emergency surgery were associated with
 higher hazard ratios of one-year mortality. Discussion Preoperative anemia
 is common. Anemia, macrocytosis and high RDW increases one year mortality.
description: Prevalence of
 preoperative anemia, abnormal mean corpuscular volume and red cell
 distribution width among surgical patients in Singapore, and their
 influence on one year mortalityThis is the patient
 database that was used to generate the results in our
 manuscript.Anemia prevalence PLOS dyrad
 legend.xlsx
DOI: 10.5061/dryad.62fj4
title: Data from: A new enigmatic hyolith from the Cambrian of West Gondwana and its bearing on the systematics of hyoliths

description: The genus Aladraco nom. nov. is described and discussed with two species
 recognized from coeval strata of the lower traditional middle Cambrian, A.
 schloppensis (Wurm, 1925) from the Tannenknock Formation of the Franconian
 Forest region, Germany, and A. ougnatensis sp. nov. from the Jbel Wawrmast
 Formation of the eastern Anti-Atlas, Morocco. Aladraco was formerly known
 as Oxyprymna Kiderlen, 1933, a preoccupied generic name that compelled
 renaming of the genus. The genus bears morphological characters such as
 the size, shape and external ornamentation of the conch which clearly
 indicate a systematic position under the class Hyolitha. A number of the
 characters, such as a tripartition into an axial chamber and lateral
 acuminate processes, and the course of the apertural margin, differ
 considerably from those seen in the two orders Hyolithida and Orthothecida
 and appear to indicate distinct differences in functional morphology.
 However, similarities of the morphological characters with the known
 representatives of the Hyolithida suggest that species are derived from
 this systematic group and should be dealt with as a hitherto unrecognized
 distinct suborder and family, introduced as Aladracina subord. nov. and
 Aladracidae fam. nov.
description: Aladraco_localities_Wildenstein_sliceSample localities of Aladraco schloppensis in Tannenknock Formation, Franconian Forest Region, GermanyAladraco_schloppensis_Localities_WildensteinTable of sample localities of Aladraco schloppensis from Tannenknock Formation, Wildenstein slice, Franconian Forest Region, Germany
DOI: 10.5061/dryad.nb8m9
title: Data from: Ferromagnetically filled carbon nano-onions: the key role of sulfur in dimensional, structural and electric control

description: A key challenge in the fabrication of ferromagnetically filled carbon
 nano-onions (CNOs) is the control of their thickness, dimensions and
 electric properties. Up to now literature works have mainly focused on the
 encapsulation of different types of ferromagnetic materials including
 α-Fe, Fe3C, Co, FeCo, FePd3 and others within CNOs. However, no report has
 yet shown a suitable method for controlling both the number of shells,
 diameter and electric properties of the produced CNOs. Here, we
 demonstrate an advanced chemical vapour deposition approach in which the
 use of small quantities of sulfur during the pyrolysis of ferrocene allows
 for the control of (i) the diameter of the CNOs, (ii) the number of shells
 and (iii) the electric properties. We demonstrate the morphological,
 structural, electric and magnetic properties of these new types of CNOs by
 using SEM, XRD, TEM, HRTEM, EIS and VSM techniques.
description: Supplementary
 MaterialSupplementary
 Informationsupp info
 Final.docx
DOI: 10.5061/dryad.s4g56
title: Data from: Non-contact incipient fault diagnosis method of fixed-axis gearbox based on CEEMDAN

description: Gearbox plays most essential role in the modern machinery for transmitting
 the required torque along with motion and contributes to wide range of
 applications. Any failure in gearbox components affects the productivity
 and efficiency of the system. Most machine breakdowns related to gears are
 a result of improper operating conditions and loading, hence leads to
 failure of the whole mechanism. Ensemble Empirical Mode Decomposition
 (EEMD) comprises advancement and valuable addition in Empirical Mode
 Decomposition (EMD) and has been widely used in fault detection of
 rotating machines. However, intrinsic mode functions (IMFs) produced by
 EEMD often carry the residual noise. Also, the produced IMFs are different
 in number due to addition of white Gaussian noise, which leads to final
 averaging problem. To alleviate these drawbacks, Complete Ensemble
 Empirical Mode Decomposition with Adaptive Noise (CEEMDAN) was previously
 presented. This paper describes and presents the implementation of CEEMDAN
 for fault diagnosis of simulated local defects using sound signals in a
 fixed-axis gearbox. Statistical parameters are extracted from decomposed
 sound signals for different simulated faults. Results shows the
 effectiveness of CEEMDAN over EEMD in order to obtain more accurate IMFs
 and fault severity.
description: RAW_DATA
DOI: 10.5061/dryad.c57rf
title: Data from: Do sperm really compete and do eggs ever have a choice? Adult distribution and gamete mixing influence sexual selection, sexual conflict, and the evolution of gamete recognition proteins in the sea

description: The evolution of gametic compatibility and the effectiveness of
 compatibility, within and across species, depend on whether sperm from
 different males directly compete for an egg and whether eggs ever have a
 choice. Direct sperm competition and egg choice depend on whether sperm
 from different males arrive at an egg in the brief interval between first
 sperm contact and fertilization. Although this process may be relevant for
 all sexually reproducing organisms, it is most easily examined in aquatic
 external fertilizers. When sperm are released into the sea, packets of
 seawater at the spatial scale relevant to single eggs might contain sperm
 from only one male, eliminating the potential for direct sperm competition
 and egg choice. Field experiments and a simple heuristic model examining
 the degree of sperm mixing for the sea urchin Strongylocentrotus
 franciscanus indicate that degree of competitive fertilization depends on
 density and distribution of competing males and that the nature of this
 competition influences whether males with high- or low-affinity gamete
 recognition protein genotypes have higher reproductive success. These
 results provide a potential explanation for the generation and maintenance
 of variation in gamete recognition proteins and why effectiveness of
 conspecific sperm precedence can be density dependent.
description: Data and Simulation
 equationsThis file has five
 worksheets, one for each experiment and one for the model simulations.
 Codes and notes for each worksheet are provided in that
 worksheet.Levitan July 2017 Am Nat
 data.xlsx
DOI: 10.5061/dryad.6tc06
title: Data from: Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end

description: Caves are perceived as isolated, extreme habitats with a set of uniquely
 specialized biota, which long ago led to the idea that caves are
 ‘evolutionary dead-ends.’ This suggests that cave-adapted taxa may be
 doomed for extinction before they can diversify or transition to a more
 stable state. However, this hypothesis has not been explicitly tested in a
 phylogenetic framework with multiple independent cave-dwelling groups.
 Here we use the freshwater crayfish, a group with dozens of cave-dwelling
 species in multiple lineages, as a system to test this hypothesis. We
 consider historical patterns of lineage diversification and habitat
 transition as well as current patterns of geographic range size. We find
 that while cave-dwelling lineages have small relative range sizes and
 rarely transition back to the surface, they exhibit remarkably similar
 diversification patterns to those of other habitat types and appear to be
 able to maintain a diversity of lineages through time. This suggests that
 cave-adaptation is not a ‘dead-end’ for freshwater crayfish, which has
 positive implications for our understanding of biodiversity and
 conservation in cave habitats.
description: DatasetS1 - Sequence
 alignmentConcatenated alignment
 of six genes used for phylogenetic analysis along with best-fit
 partitioning schemeDatasetS1.nexDatasetS2 - Synthetic phylogenySynthetic tree fileDatasetS2.treDatasetS3 - Maximum likelihood phylogenyTime-calibrated, maximum likelihood molecular phylogeny.DatasetS3.treDatasetS4 - Bootstrap phylogeniesTime-calibrated bootstrap phylogenies (N=1000)DatasetS4.treTableS1 - GenBank numbersGenBank accession numbers for all genes used in molecular phylogenetic analysis. Sequences new to this study are in boldTableS1.xlsTableS2 - Habitat and range size dataHabitat assignments and log10 range size for taxa in the synthetic tree. Taxa without any data are excluded.TableS2.csvFileS1 - R scriptsR scripts used to execute the state-dependent diversification analyses and model adequacy tests.FileS1.R_scripts.RFileS2 - treePL config fileConfiguration file with fossil calibrations used in treePLFileS2.treePL.txtFileS3 - habitats Cave geosseHabitat state data used for GeoSSE analysis, derived from Table S2FileS3.habitats_Cave.geosse.csvFileS4 - habitats Cave hisseHabitat state data used for HiSSE analysis, derived from Table S2FileS4.habitats_Cave.hisse.tsv
DOI: 10.5061/dryad.3rt12
title: Data from: Essential oil optimizes the susceptibility of Callosobruchus maculatus and enhances the nutritional qualities of stored cowpea Vigna unguiculata

description: The intensive use of synthetic pesticides in cowpea storage has led to the
 development of resistance by Callosobruchus maculatus and subsequent
 degradation of the grains quality. In an attempt to circumvent these
 constraints, we investigated the susceptibility of C. maculatus to 2,
 3-Dichlorovinyl dimethyl phosphate (DDVP) and Lippia adoensis essential
 oil (EO) and then assessed the variations in the proportions of
 nutritional values of treated grains 150 days after storage. The survival
 rate was recorded after 5 generations. The resistance index and
 biochemical parameters of grains were determined according to previously
 described techniques. The survival rate (SR) and resistance index (RI50
 and RI95) significantly increased in DDVP treatments (r=0.889; p=0.018)
 proportionally with damage whereas in EO treatments, those values remained
 lower although showed a slight but not significant variations (p=0.0764)
 throughout generations. DDVP stored grains yielded higher crude protein
 values, but lower carbohydrates, tannins, phenolics and minerals compared
 to EO. Eighteen amino acids were detected in EO treated grains and 14 in
 DDVP which was devoid of albumin and prolamin. EO could therefore
 represent a safe alternative bio-pesticide to cope with the insect
 resistance and enhance the nutritional qualities of stored cowpea seeds.
description: ESM1.Lab mortality and
 FAO protein reference.rsosESM2.Calculation
 formulas and experimental procedures.rsos
DOI: 10.5061/dryad.v0b7v
title: Data from: Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae)

description: Cerambycidae is a species-rich family of mostly wood-feeding (xylophagous)
 beetles containing nearly 35 000 known species. The higher-level phylogeny
 of Cerambycidae has never been robustly reconstructed using molecular
 phylogenetic data or a comprehensive sample of higher taxa, and its
 internal relationships and evolutionary history remain the subjects of
 ongoing debate. We reconstructed the higher-level phylogeny of
 Cerambycidae using phylogenomic data from 522 single copy nuclear genes,
 generated via anchored hybrid enrichment. Our taxon sample (31
 Chrysomeloidea, four outgroup taxa: two Curculionoidea and two Cucujoidea)
 included exemplars of all families and 23 of 30 subfamilies of
 Chrysomeloidea (18 of 19 non-chrysomelid Chrysomeloidea), with a focus on
 the large family Cerambycidae. Our results reveal a monophyletic
 Cerambycidae s.s. in all but one analysis, and a polyphyletic Cerambycidae
 s.l. When monophyletic, Cerambycidae s.s. was sister to the family
 Disteniidae. Relationships among the subfamilies of Cerambycidae s.s. were
 also recovered with strong statistical support except for Cerambycinae
 being made paraphyletic by Dorcasomus Audinet-Serville (Dorcasominae) in
 the nucleotide (but not amino acid) trees. Most other chrysomeloid
 families represented by more than one terminal taxon – Chrysomelidae,
 Disteniidae, Vesperidae and Orsodacnidae – were monophyletic, but
 Megalopodidae was rendered paraphyletic by Cheloderus Gray (Oxypeltidae).
 Our study corroborates some relationships within Chrysomeloidea that were
 previously inferred from morphological data, while also reporting several
 novel relationships. The present work thus provides a robust framework for
 future, more deeply taxon-sampled, phylogenetic and evolutionary studies
 of the families and subfamilies of Cerambycidae s.l. and other
 Chrysomeloidea.
description: Coleoptera_AHE_ProbesAnchored hybrid enrichment probe sequences for Coleoptera.Coleoptera_AHE_probes.xlsxAmino-acid concatenated matrixFinal concatenated matrix for amino acid Maximum-likelihood phylogenyconcatenated_aa.phyNucleotide concatenated matrixFinal concatenated matrix for nucleotide Maximum-likelihood phylogenyconcatenated_nt.phyPartitioned file for amino acid dataPartition file for amino acid data generated from PartitionFinder v2.0.part_aa.txtPartitioned file for nucleotide dataPartition file for nucleotide data generated from PartitionFinder v2.0.part_nt.txt
DOI: 10.5061/dryad.hq7b8
title: Data from: Arabidopsis MKK10-MPK6 mediates red-light-regulated opening of seedling cotyledons through phosphorylation of PIF3

description: Photomorphogenesis is an important process in which seedlings emerge from
 soil and begin autotrophic growth. Photomorphogenesis mechanisms include
 light signal perception, signal transduction, and the modulation of
 light-responsive genes expression, ultimately leading to cellular and
 developmental changes. Phytochrome-interacting factors (PIFs) play pivotal
 roles in negatively regulating photomorphogenesis. Light-induced
 activation of phytochromes triggers the rapid phosphorylation and
 degradation of PIFs, but the kinases responsible for the phosphorylation
 of PIFs are largely unknown. Here, we show that Arabidopsis MPK6 is a
 kinase involved in phosphorylating PIF3 and regulating red (R)
 light-induced cotyledon opening, a crucial process during seedling
 photomorphogenesis. MPK6 was activated by R light, and cotyledon opening
 angle in R light was reduced in mpk6 seedlings. MKK10, a MAPKK whose
 function is currently unclear, appears to act as a kinase upstream of MPK6
 in regulating cotyledon opening. The activation of MPK6 by MKK10 led to
 the phosphorylation of PIF3 and accelerated its turnover in transgenic
 seedlings. Accordingly, the overexpression of PIF3 suppressed the
 MKK10-induced cotyledon opening. MKK10-MPK6 function downstream of phyB in
 regulating seedlings cotyledon opening in R light. Therefore, MKK10-MPK6
 cascade appears to mediate the regulation of R light-controlled seedling
 photomorphogenesis,via a mechanism that might involve the phosphorylation
 of PIF3.
description: Supplementary tables and
 figuresSupplementary
 data.pdf
DOI: 10.5061/dryad.m1b34
title: Data from: Preparation of core–shell structured CaCO 3 microspheres as rapid and recyclable adsorbent for anionic dyes

description: Core–shell structured CaCO3 microspheres (MSs) were prepared by a facile,
 one-pot method at room temperature. The adsorbent dosage and adsorption
 time of the obtained CaCO3 MSs were investigated. The results suggest that
 these CaCO3 MSs can rapidly and efficiently remove 99–100% of anionic dyes
 within the first 2 min. The obtained CaCO3 MSs have a high
 Brunauer–Emmett–Teller surface area (211.77 m2 g−1). In addition, the
 maximum adsorption capacity of the obtained CaCO3 MSs towards Congo red
 was 99.6 mg g−1. We also found that the core–shell structured CaCO3 MSs
 have a high recycling capability for removing dyes from water. Our results
 demonstrate that the prepared core–shell structured CaCO3 MSs can be used
 as an ideal, rapid, efficient and recyclable adsorbent to remove dyes from
 aqueous solution.
description: Supporting
 InformationSupporting
 information-Revised.doc