cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4609837.v1
title: Cardiovascular Disease among Atomic Bomb Survivors

description: Purpose: The profile of cardiovascular disease in Japan has been different from that in Western countries. Hypertension was the major cause not only for hemorrhagic stroke but also for ischemic stroke and heart disease in the past, and the influence of hypertension has decreased with calendar years because of reduced salt intake and westernization of lifestyle, and also improved medical care. The health status of atomic bomb survivors has reflected this profile as well as radiation effects. It is also likely that this cohort has been affected by the difficult conditions experienced in the aftermath of the war and atomic bombings. In this article, we tried to make a consistent interpretation of epidemiological findings of atomic bomb radiation effects on cardiovascular disease. Conclusion: Among the atomic bomb survivors, radiation exposure was associated with some cardiovascular diseases that are often associated with hypertension, and dose response appeared to be primarily non-linear among those who were exposed at younger ages. These effects are thought to reflect the nature of whole body irradiation. But, some findings remain inconsistent, possibly because of possible misclassification in death certificate diagnoses in the Life Span Study as well as selected information from the Adult Health Study which was limited to participants, focused on specific outcomes, and gathered in selected periods of follow-up. Therefore, a comprehensive and balanced interpretation of the results from both groups is necessary.
DOI: 10.6084/m9.figshare.4609783
title: IT6_originales FV 240515

description: IT6 experiment
DOI: 10.6084/m9.figshare.4609810.v1
title: Supporting Data For: Effects of Ambient Humidity on the Optimum Annealing Time of Mixed-Halide Perovskite Solar Cells

description: This spreadsheet contains supporting data for our published article. The attached document gives an overview of the methods applied and data present, but for a full description please see the published paper at https://doi.org/10.1088/1361-6528/aa5bec.
DOI: 10.6084/m9.figshare.4609765
title: Towards the Complete Proteinaceous Regulome of Acinetobacter baumannii

description: Supplementary figures as publishedin Microbial Genomics in the following article: Towards the Complete Proteinaceous Regulome of Acinetobacter baumannii 10.1099/mgen.0.000107
DOI: 10.6084/m9.figshare.4609765.v1
title: Towards the Complete Proteinaceous Regulome of Acinetobacter baumannii

description: Supplementary figures as publishedin Microbial Genomics in the following article: Towards the Complete Proteinaceous Regulome of Acinetobacter baumannii 10.1099/mgen.0.000107
DOI: 10.6084/m9.figshare.4609783.v1
title: IT6_originales FV 240515

description: IT6 experiment
DOI: 10.6084/m9.figshare.4609708
title: TMS data (MEPs, questionnaires, ratings from Karabanov 2016, EJN)

description: Data set is in great detail described in " Modulation of front-parietal connections during the rubber hand illusion" - Karabanov et al. 2016 Journal of European Neuroscience
DOI: 10.6084/m9.figshare.4609708.v2
title: TMS data (MEPs, questionnaires, ratings from Karabanov 2016, EJN)

description: Data set is in great detail described in " Modulation of front-parietal connections during the rubber hand illusion" - Karabanov et al. 2016 Journal of European Neuroscience
DOI: 10.6084/m9.figshare.4609708.v1
title: Paired_Pulse_ raw_task_TSonly.sta

description: Data set is in great detail described in " Modulation of front-parietal connections during the rubber hand illusion" - Karabanov et al. 2016 Journal of European Neuroscience
DOI: 10.6084/m9.figshare.4609555
title: IT6_ originales FV del 230515

description: IT6 experiment
DOI: 10.6084/m9.figshare.4609483
title: Amyotrophic lateral sclerosis - frontotemporal spectrum disorder (ALS-FTSD): Revised diagnostic criteria

description: This article presents the revised consensus criteria for the diagnosis of frontotemporal dysfunction in amyotrophic lateral sclerosis (ALS) based on an international research workshop on frontotemporal dementia (FTD) and ALS held in London, Canada in June 2015. Since the publication of the Strong criteria, there have been considerable advances in the understanding of the neuropsychological profile of patients with ALS. Not only is the breadth and depth of neuropsychological findings broader than previously recognised – – including deficits in social cognition and language – but mixed deficits may also occur. Evidence now shows that the neuropsychological deficits in ALS are extremely heterogeneous, affecting over 50% of persons with ALS. When present, these deficits significantly and adversely impact patient survival. It is the recognition of this clinical heterogeneity in association with neuroimaging, genetic and neuropathological advances that has led to the current re-conceptualisation that neuropsychological deficits in ALS fall along a spectrum. These revised consensus criteria expand upon those of 2009 and embrace the concept of the frontotemporal spectrum disorder of ALS (ALS-FTSD).
DOI: 10.6084/m9.figshare.4609555.v1
title: IT6_ originales FV del 230515

description: IT6 experiment
DOI: 10.6084/m9.figshare.4609450
title: Pollen records related to vegetation and climate change from northern Chhattisgarh, central India during the late Quaternary

description: Pollen records from a 1.8-m deep sediment profile from Lakadandh Swamp, Baikunthpur Forest Range of Koriya District, Chhattisgarh (C'garh, central India), show the late Quaternary vegetation and climate history. Lakadandh Swamp occurs in the core monsoon zone of India. The study revealed that between ∼12,785 and ∼9035 cal. yrs BP, tree savannah vegetation, – composed of Poaceae, Amaranthaceae, Tubuliflorae along with the tree taxa <i>Holoptelea</i> sp. and Sapotaceae; sparsely distributed <i>Acacia</i> sp., <i>Emblica officinalis, Lagerstroemia</i> sp., <i>Madhuca indica</i> and <i>Syzygium</i> sp., <i>thickets of Ricinus</i> and <i>Zizyphus</i> sp. – occurred in the region under a cool and dry climate probably indicative of reduced monsoon precipitation. The early part of this phase is comparable with the Younger Dryas (YD) cold event which occurred between ∼12,800 and ∼11,500 yrs BP. Between ∼9035 and ∼4535 cal. yrs BP, the expansion of existing taxa <i>Holoptelea</i> sp., Sapotaceae, <i>Madhuca indica</i>, <i>Ailanthus excelsa</i> and <i>Lagerstroemia</i> sp. as well as the appearance of <i>Acacia</i>, and <i>Shorea robusta</i>, Acanthaceae, <i>Rungia</i> sp., and <i>Ricinus</i> sp., shows the tree savannah vegetation was replaced by open mixed tropical deciduous forest under a regime of warm and moderately humid climate with increased monsoon precipitation. Since ∼4535 cal. yrs BP to Present, owing to the improvement of most of the forest constituents, particularly <i>Madhuca indica</i>, <i>Holoptelea</i> sp., Sapotaceae and <i>Lannea coromandelica</i>, and also with immigration of <i>Terminalia</i> sp., <i>Diospyros</i> sp., <i>Butea</i> sp. and <i>Maytenus</i> sp., mixed tropical deciduous forest has taken over the space covered by open mixed tropical deciduous forest under a warm and relatively more humid climate, with further increase in monsoon precipitation. The existing cereal-based agricultural practice increased during the latter two phases, which could be attributed to increased monsoon precipitation.
DOI: 10.6084/m9.figshare.4609450.v1
title: Pollen records related to vegetation and climate change from northern Chhattisgarh, central India during the late Quaternary

description: Pollen records from a 1.8-m deep sediment profile from Lakadandh Swamp, Baikunthpur Forest Range of Koriya District, Chhattisgarh (C'garh, central India), show the late Quaternary vegetation and climate history. Lakadandh Swamp occurs in the core monsoon zone of India. The study revealed that between ∼12,785 and ∼9035 cal. yrs BP, tree savannah vegetation, – composed of Poaceae, Amaranthaceae, Tubuliflorae along with the tree taxa <i>Holoptelea</i> sp. and Sapotaceae; sparsely distributed <i>Acacia</i> sp., <i>Emblica officinalis, Lagerstroemia</i> sp., <i>Madhuca indica</i> and <i>Syzygium</i> sp., <i>thickets of Ricinus</i> and <i>Zizyphus</i> sp. – occurred in the region under a cool and dry climate probably indicative of reduced monsoon precipitation. The early part of this phase is comparable with the Younger Dryas (YD) cold event which occurred between ∼12,800 and ∼11,500 yrs BP. Between ∼9035 and ∼4535 cal. yrs BP, the expansion of existing taxa <i>Holoptelea</i> sp., Sapotaceae, <i>Madhuca indica</i>, <i>Ailanthus excelsa</i> and <i>Lagerstroemia</i> sp. as well as the appearance of <i>Acacia</i>, and <i>Shorea robusta</i>, Acanthaceae, <i>Rungia</i> sp., and <i>Ricinus</i> sp., shows the tree savannah vegetation was replaced by open mixed tropical deciduous forest under a regime of warm and moderately humid climate with increased monsoon precipitation. Since ∼4535 cal. yrs BP to Present, owing to the improvement of most of the forest constituents, particularly <i>Madhuca indica</i>, <i>Holoptelea</i> sp., Sapotaceae and <i>Lannea coromandelica</i>, and also with immigration of <i>Terminalia</i> sp., <i>Diospyros</i> sp., <i>Butea</i> sp. and <i>Maytenus</i> sp., mixed tropical deciduous forest has taken over the space covered by open mixed tropical deciduous forest under a warm and relatively more humid climate, with further increase in monsoon precipitation. The existing cereal-based agricultural practice increased during the latter two phases, which could be attributed to increased monsoon precipitation.
DOI: 10.6084/m9.figshare.4609495.v1
title: graph.gephi

description: Description
DOI: 10.6084/m9.figshare.4609429
title: Elicitation of willingness to pay for upgradeable products with calibrated auction-conjoint method

description: Understanding consumer preferences is a key element of new product development and sustainable consumption. Among sustainable products, we consider new products with upgradability properties. Upgradeability helps to prolong the lifespan of a product, satisfying changing consumer preferences and needs. This additional created value must be measured by willingness to pay premiums. This paper uses a method which valorizes each attribute of the product and analyzes the determinants of these premiums. A key advantage of the calibrated auction-conjoint method is the possibility of estimating numerous attributes with a large number of attribute levels. The results support the idea that consumers are willing to pay premiums for upgradeable, sustainable products, although these premiums are rather weak for some durable products in the study.
DOI: 10.6084/m9.figshare.4609429.v1
title: Elicitation of willingness to pay for upgradeable products with calibrated auction-conjoint method

description: Understanding consumer preferences is a key element of new product development and sustainable consumption. Among sustainable products, we consider new products with upgradability properties. Upgradeability helps to prolong the lifespan of a product, satisfying changing consumer preferences and needs. This additional created value must be measured by willingness to pay premiums. This paper uses a method which valorizes each attribute of the product and analyzes the determinants of these premiums. A key advantage of the calibrated auction-conjoint method is the possibility of estimating numerous attributes with a large number of attribute levels. The results support the idea that consumers are willing to pay premiums for upgradeable, sustainable products, although these premiums are rather weak for some durable products in the study.
DOI: 10.6084/m9.figshare.12907019
title: ST3-4 - processing conditions solar cells

description: Fabrication details and results of J-V characterization for optimized and as-cast devices with DR3 as donor.<br>Fabrication details and results of J-V characterization for optimized devices with PBDB-T-2F, PTB7-Th and PBDB-T-SF as donor.<br>As presented in Supporting Information tables SF3 and SF4, respectively.
DOI: 10.6084/m9.figshare.12907019.v1
title: ST3-4 - processing conditions solar cells

description: Fabrication details and results of J-V characterization for optimized and as-cast devices with DR3 as donor.<br>Fabrication details and results of J-V characterization for optimized devices with PBDB-T-2F, PTB7-Th and PBDB-T-SF as donor.<br>As presented in Supporting Information tables SF3 and SF4, respectively.
DOI: 10.6084/m9.figshare.4609396
title: Supplementary Material for: Convergent Results from Neuropsychology and from Neuroimaging in Patients with Mild Cognitive Impairment

description: <b><i>Background/Aims:</i></b> To investigate the correspondence between neuropsychological single measures and variation in fludeoxyglucose positron emission tomography (FDG PET) glucose metabolism and magnetic resonance imaging (MRI) cortical thickness in mild cognitive impairment (MCI) patients. <b><i>Methods:</i></b> Forty-two elderly controls and 73 MCI subjects underwent FDG PET and MRI scanning. Backward regression analyses with PET and MRI regions were used as dependent variables, while Rey Auditory Verbal Memory Test (RAVLT) recall, Trail Making Test B (TMT B), and a composite test score (RAVLT learning and immediate recall, TMT A, COWAT, and letter-number sequencing) were used as predictor variables. <b><i>Results:</i></b> The composite score predicted variation in cortical metabolism; supplementary analyses showed that TMT B was significantly correlated with PET metabolism as well. RAVLT and TMT B were significant predictors of variation in MRI cortical thickness. <b><i>Conclusion:</i></b> Our results indicate that RAVLT and TMT B are sensitive to variation in Alzheimer disease neuroimaging markers.
DOI: 10.6084/m9.figshare.4609495.v3
title: graph.gephi

description: Description
DOI: 10.6084/m9.figshare.4609396.v1
title: Supplementary Material for: Convergent Results from Neuropsychology and from Neuroimaging in Patients with Mild Cognitive Impairment

description: <b><i>Background/Aims:</i></b> To investigate the correspondence between neuropsychological single measures and variation in fludeoxyglucose positron emission tomography (FDG PET) glucose metabolism and magnetic resonance imaging (MRI) cortical thickness in mild cognitive impairment (MCI) patients. <b><i>Methods:</i></b> Forty-two elderly controls and 73 MCI subjects underwent FDG PET and MRI scanning. Backward regression analyses with PET and MRI regions were used as dependent variables, while Rey Auditory Verbal Memory Test (RAVLT) recall, Trail Making Test B (TMT B), and a composite test score (RAVLT learning and immediate recall, TMT A, COWAT, and letter-number sequencing) were used as predictor variables. <b><i>Results:</i></b> The composite score predicted variation in cortical metabolism; supplementary analyses showed that TMT B was significantly correlated with PET metabolism as well. RAVLT and TMT B were significant predictors of variation in MRI cortical thickness. <b><i>Conclusion:</i></b> Our results indicate that RAVLT and TMT B are sensitive to variation in Alzheimer disease neuroimaging markers.
DOI: 10.15131/shef.data.4609351
title: APCs purchased by University of Sheffield from RCUK and COAF open access grants during 2016

description: List of APCs paid for in 2016 from the open access grants provided by RCUK and COAF. Spreadsheet in CSV format.
DOI: 10.6084/m9.figshare.4609348
title: How Much Code Covered By Tests is Pseudo-Tested?

description: Dataset of the <b>ISSTA 2017 paper by Niedermayr et al.</b><br><br>We analyzed test cases of 19 open-source projects using mutation testing. We determined for each covered method whether at least one test case can detect if the method’s whole logic is removed. We studied method characteristics and relations to test cases to find indicators for covered methods that are pseudo-tested.<br><br>The SQL dump requires a MySQL database (version &gt;= 5.7).<br>
DOI: 10.15131/shef.data.4609351.v2
title: APCs purchased by University of Sheffield from RCUK and COAF open access grants during 2016

description: List of APCs paid for in 2016 from the open access grants provided by RCUK and COAF. Spreadsheet in CSV format.
DOI: 10.6084/m9.figshare.4609336
title: Diffuse Models for CTA data challenge

description: full-sky diffuse gamma-ray model generated with DRAGON and GammaSkypi0, brems, IC included<br><br>gas: ringModel, Ferrieresource term: Case&Bhattacharya, Ferrierehealpix resolution: 8
DOI: 10.15131/shef.data.4609351.v1
title: APCs Purchased by University of Sheffield from RCUK/COAF Open Access Grants

description: List of APCs paid for in 2016 from the open access grants provided by RCUK and COAF. Spreadsheet in CSV format.
DOI: 10.6084/m9.figshare.4609330
title: IT5_ TrJ87_ OLD but ok

description: IT5 experiment
DOI: 10.6084/m9.figshare.4609336.v1
title: Diffuse Models for CTA data challenge

description: full-sky diffuse gamma-ray model generated with DRAGON and GammaSkypi0, brems, IC included<br><br>gas: ringModel, Ferrieresource term: Case&Bhattacharya, Ferrierehealpix resolution: 8
DOI: 10.6084/m9.figshare.4609330.v1
title: IT5_ TrJ87_ OLD but ok

description: IT5 experiment
DOI: 10.6084/m9.figshare.4609303
title: Complete_Enterobacteriaceae_plasmids

description: This dataset comprises sequences of 2097 complete Enterobacteriaceae plasmids, curated following initial retrieval from the NCBI nucleotide database on 26th August 2016. The 2097 nucleotide sequences are provided as a FASTA file ('nucleotideseq.fa'). Corresponding protein sequences (n=12,582), generated by translating each plasmid in all 6 frames, are also provided ('translatedproteinseq.fa'). In addition, there are two zipped Genbank files providing more information on accessions. One contains the 2097 curated accessions; the other contains 6952 accessions that were obtained initially, prior to curation.<br>The protein dataset ('translatedproteinseq.fa') is a useful resource for MOB typing plasmids (a method of plasmid classification based on detection of relaxase proteins). To conduct MOB typing, download the protein dataset, as well as scripts provided in a related Figshare code repository: https://figshare.com/s/3f8973dea1fe03c4f62fFurther instructions can be found on the Github page referenced in the Description section of the Figshare code repository.<br>For more details about the dataset provided here, see the associated journal article: "A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database", Orlek <i>et al. </i>in press.
DOI: 10.6084/m9.figshare.4609306
title: IT4_ some fluoview originals

description: IT4 experiment
DOI: 10.6084/m9.figshare.4609306.v1
title: IT4_ some fluoview originals

description: IT4 experiment
DOI: 10.6084/m9.figshare.4609288
title: DIgestion 7 from EXP IT13. LEICA register

description: digestion IT13
DOI: 10.6084/m9.figshare.4609303.v1
title: complete_Enterobacteriaceae_plasmids_nucleotideseq.fa

description: This dataset comprises nucleotide sequences of 2103 complete Enterobacteriaceae plasmids, curated following initial retrieval from the NCBI nucleotide database on 26th August 2016. For more details, see the associated journal article: "A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database", Orlek <i>et al. </i>in press.<br>File format: FASTA
DOI: 10.6084/m9.figshare.4609288.v1
title: DIgestion 7 from EXP IT13. LEICA register

description: digestion IT13
DOI: 10.6084/m9.figshare.4609303.v2
title: Complete_Enterobacteriaceae_plasmids

description: This dataset comprises sequences of 2103 complete Enterobacteriaceae plasmids, curated following initial retrieval from the NCBI nucleotide database on 26th August 2016. The 2103 nucleotide sequences are provided as a FASTA file ('nucleotideseq_Complete_Enterobacteriaceae_plasmids.fa'). Corresponding protein sequences (n=12,618), generated by translating each plasmid in all 6 frames, are also provided ('translatedproteinseq_Complete_Enterobacteriaceae_plasmids.fa'). <br>For more details, see the associated journal article: "A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database", Orlek <i>et al. </i>in press.
DOI: 10.6084/m9.figshare.4609303.v4
title: Complete_Enterobacteriaceae_plasmids

description: This dataset comprises sequences of 2097 complete Enterobacteriaceae plasmids, curated following initial retrieval from the NCBI nucleotide database on 26th August 2016. The 2097 nucleotide sequences are provided as a FASTA file ('nucleotideseq.fa'). Corresponding protein sequences (n=12,582), generated by translating each plasmid in all 6 frames, are also provided ('translatedproteinseq.fa'). In addition, there are two zipped Genbank files providing more information on accessions. One contains the 2097 curated accessions; the other contains 6952 accessions that were obtained initially, prior to curation.<br>The protein dataset ('translatedproteinseq.fa') is a useful resource for MOB typing plasmids (a method of plasmid classification based on detection of relaxase proteins). To conduct MOB typing, download the protein dataset, as well as scripts provided in a related Figshare code repository: https://figshare.com/s/3f8973dea1fe03c4f62fFurther instructions can be found on the Github page referenced in the Description section of the Figshare code repository.<br>For more details about the dataset provided here, see the associated journal article: "A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database", Orlek <i>et al. </i>in press.
DOI: 10.6084/m9.figshare.4609255
title: Structural modulation of factor VIIa by full-length tissue factor (TF<sub>1-263</sub>): implication of novel interactions between EGF2 domain and TF

description: Tissue factor (TF)-mediated factor VII (FVII) activation and a subsequent proteolytic TF-FVIIa binary complex formation is the key step initiating the coagulation cascade, with implications in various homeostatic and pathologic scenarios. TF binding allosterically modifies zymogen-like free FVIIa to its highly catalytically active form. As a result of unresolved crystal structure of the full-length TF<sub>1-263</sub>-FVIIa binary complex and free FVIIa, allosteric alterations in FVIIa following its binding to full-length TF and the consequences of these on function are not entirely clear. The present study aims to map and identify structural alterations in FVIIa and TF resulting from full-length TF binding to FVIIa and the key events responsible for enhanced FVIIa activity in coagulation. We constructed the full-length TF<sub>1-263</sub>-FVIIa membrane bound complex using computational modeling and subjected it to molecular dynamics (MD) simulations. MD simulations showed that TF alters the structure of each domain of FVIIa and these combined alterations contribute to enhanced TF-FVIIa activity. Detailed, domain-wise investigation revealed several new non-covalent interactions between TF and FVIIa that were not found in the truncated soluble TF-FVIIa crystal structure. The structural modulation of each FVIIa domain imparted by TF indicated that both inter and intra-domain communication is crucial for allosteric modulation of FVIIa. Our results suggest that these newly formed interactions can provide additional stability to the protease domain and regulate its activity profile by governing catalytic triad (CT) orientation and localization. The unexplored newly formed interactions between EGF2 and TF provides a possible explanation for TF-induced allosteric activation of FVIIa.