cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/s9d65n688z
title: 11

description: Impacts of vegetation type on soil infiltration at soil erosion–deposition sites in the karst trough valley
DOI: 10.6084/m9.figshare.12469052.v4
title: A comparison of two neighborhood-level socioeconomic indexes in the United States: raw data and R code

description: Here are the raw data and R code used in the paper "A comparison of two neighborhood-level socioeconomic indices in the United States" by Boscoe and Li currently under review. The raw data and data dictionary are exactly as they were obtained from the National Historical Geographic Information System (NHGIS). The data comprise the 7 American Community Survey variables used to construct the Yost Index at the block group level for the period 2011-2015. <br>
DOI: 10.6084/m9.figshare.13580423.v1
title: Supplementary Material for: Week 2 Symptomatic Response with Vedolizumab as a Predictive Factor in Japanese Anti-TNFα-Naive Patients with Ulcerative Colitis: A post hoc Analysis of a Randomized, Placebo-Controlled Phase 3 Trial

description: <b><i>Background and Aim:</i></b> To evaluate the onset of symptomatic response with vedolizumab in patients with moderate-to-severe ulcerative colitis in Japan. <b><i>Methods:</i></b> Patients were randomized to receive vedolizumab 300 mg or placebo at Weeks 0, 2, and 6. Mayo subscores were analyzed in patients with baseline stool frequency (SF) ≥1 and rectal bleeding (RB) ≥1. In patients with baseline SF ≥2 and RB ≥1, the proportion who achieved SF ≤1 and RB = 0 was determined. <b><i>Results:</i></b> Patients were randomized to vedolizumab (<i>n</i> = 164) or placebo (<i>n</i> = 82). Decrease from baseline in mean SF subscore was greater with vedolizumab versus placebo from Week 2 (−6.6%; 95% confidence interval [CI], −16.2, 3.0), with a greater difference in anti-tumor necrosis factor (TNF)α-naive patients (vedolizumab vs. placebo, −13.2%; 95% CI, −29.7, 3.3). Mean percentage decrease from baseline RB subscore was numerically greater with vedolizumab versus placebo from Week 6 in anti-TNFα-naive patients (−10.7%; 95% CI, −33.0, 11.5). More patients in the anti-TNFα-naive subgroup achieved SF ≤1 and RB = 0 with vedolizumab versus placebo at Week 2 (14.8%; 95% CI, 2.5, 27.0) and Week 6 (20.3%; 95% CI, 4.4, 36.2). Patients with SF ≤1 and RB = 0 at Week 2 had higher clinical response, clinical remission, and mucosal healing rates at Week 10 than those without. <b><i>Conclusions:</i></b> Our results indicate that vedolizumab induces a rapid symptomatic response, particularly in anti-TNFα-naive patients, and suggest that early symptomatic improvement predicts treatment response at Week 10 (NCT02039505).
DOI: 10.6084/m9.figshare.21671255.v1
title: Datasets for CDCL

description: CDCL data. <br>
DOI: 10.6084/m9.figshare.22013270.v1
title: CDS and protein sequences of the Isatis indigotica genome

description: CDS and protein sequences file of the <em>Isatis indigotica </em>genome extracted using AGAT.
DOI: 10.6084/m9.figshare.644497.v3
title: Animated GIFs

description: A group of animated GIFs developed to hopefully explain natural phenomena
DOI: 10.17632/bzhk5whk5k
title: Subcision & Suction for Acne Scars: Randomized Control Trial

description: Supplementary files for "Subcision & Suction for Acne Scars: Randomized Control Trial"
DOI: 10.17632/rrtrfhcxkn
title: Distribution of Turkey's population by mother tongue according to census data 1927-1965

description: These data were prepared within the scope of the author's doctoral thesis research on ‘Turkish Migration Policy’. The aim of the research is to compile the data on mother tongue in the censuses conducted in Turkey over the years and to enable meaningful analyses. The language and explanations of the data are in Russian. 

Notes:
* Data on the mother tongue of people living in Turkey in the 1940 census were not published in the official compilation.
** Although surveys on mother tongue and religion were conducted in censuses conducted after 1965, the results of these surveys were not published in official compilations.
DOI: 10.6084/m9.figshare.1482031.v1
title: new fileset

description: Large Eye Tracking Corpus of bilingual and monolingual extensive self paced reading.
DOI: 10.6084/m9.figshare.22568641.v2
title: Supplementary_Table_1_QC_and_Alignment_statistics.xlsx

description: Supplementary Table 1. A. Characteristics of the study cohort. Mediterranean Diet Adherence Score. B-C. Statistics from the analysis of small RNA-Seq (B) and RNA-Seq (C) data.
DOI: 10.6084/m9.figshare.24611124.v1
title: Simultaneous measurement of orthogonal terahertz fields via an emission multiplexing scheme

description: The file is the data for the paper "Simultaneous measurement of orthogonal terahertz fields via an emission multiplexing scheme"
DOI: 10.6084/m9.figshare.25998151.v1
title: Inclusive Education Intentions .xlsx

description: moderating effect of social media on pre-service teachers' intentions towards inclusive education
DOI: 10.6084/m9.figshare.5129041.v1
title: Supplementary Material for: Altered Brain Structure-Function Relationships Underlie Executive Dysfunction in 22q11.2 Deletion Syndrome

description: 22q11.2 deletion syndrome (22q11DS) is a neurogenetic disorder associated with elevated rates of developmental neuropsychiatric disorders and impaired executive function (EF). Disrupted brain structure-function relationships may underlie EF deficits in 22q11DS. We administered the Behavior Rating Inventory of Executive Function (BRIEF) to assess real-world EF in patients with 22q11DS and matched controls (n = 86; age 6-17 years), along with cognitive measures that tap behavioral regulation and metacognition aspects of EF. Using FreeSurfer's whole-brain vertex cortical thickness pipeline, we investigated brain structure-EF relationships in patients with 22q11DS and controls. Behaviorally, patients with 22q11DS were impaired on multiple EF measures. Right orbitofrontal cortical thickness showed a differential relationship between real-world EF in patients with 22q11DS and controls. We also observed a group difference in the relationship between behavioral regulation and metacognition measures with thickness of ventral and dorsolateral prefrontal regions, respectively. Our findings suggest that executive dysfunction characteristic of 22q11DS is underscored by altered prefrontal cortical structure.
DOI: 10.6084/m9.figshare.6736931.v1
title: Supplementary Material for: Unique <b><i>Francisella</i></b> Phosphatidylethanolamine Acts as a Potent Anti-Inflammatory Lipid

description: Virulent <i>Francisella tularensis</i> subsp. <i>tularensis</i> (Ftt) is a dynamic, intracellular, bacterial pathogen. Its ability to evade and rapidly suppress host inflammatory responses is considered a key element for its profound virulence. We previously established that Ftt lipids play a role in inhibiting inflammation, but we did not determine the lipid species mediating this process. Here, we show that a unique, abundant, phosphatidylethanolamine (PE), present in <i>Francisella</i>, contributes to driving the suppression of inflammatory responses in human and mouse cells. Acyl chain lengths of this PE, C24: 0 and C10: 0, were key to the suppressive capabilities of <i>Francisella</i> PE. Addition of synthetic PE 24: 0–10: 0 resulted in the accumulation of PE in host cells for up to 24 h of incubation, and recapitulated the inhibition of inflammatory responses observed with native Ftt PE. Importantly, this novel PE significantly inhibited inflammatory responses driven by a medically and globally important flavivirus, dengue fever virus. Thus, targeting these lipids and/or the pathways that they manipulate represents a new strategy to combat immunosuppression engendered by Ftt, but they also show promise as a novel therapeutic intervention for significant viral infections.
DOI: 10.17632/2n5x7zfp9c
title: Worldwide trade and logistic indicators dataset from 2007 - 2018

description: The data includes LPI, GCI, GDP and trade values sourced from the UN Comtrade, International Monetary Fund (IMF), World Economic Forum, UNCTAD and the World Bank. Data from international organizations are used in order to provide consistency of the data collection process. The data ranges from 2007 to 2018 for all countries worldwide. Countries with missing data for any particular year is then eliminated from the final dataset that is used to run ANOVA.
DOI: 10.17632/bjhzrw7pty
title: Li isotope compositions of hydrothermally altered sediments in the Iheya North Knoll of the middle Okinawa Trough

description: We reported the Li isotopic compositions (δ7Li) of background and hydrothermally altered sediments from IODP331 drilling cores in the Iheya North Knoll of the middle Okinawa Trough. The sediments, primarily altered from volcanic clasts, exhibits a pristine δ7Li value (5.2 ± 0.7 ‰) similar to that of MORB (3.7 ± 1 ‰). Intense hydrothermal activity led to the complete conversion of primary feldspars into phyllosilicates, predominantly Mg-chlorite, at site C0013 and in the middle and deep parts of C0014. The altered samples showed a depletion of 7Li (ranging from -10.0 ‰ to 4.2 ‰) compared to background sediment, indicating the preferential incorporation of 6Li during the formation of secondary minerals. Furthermore, hydrothermally impacted drilling sites exhibited increasing trends in δ7Li values with depth, with the deepest samples approaching the pristine δ7Li values. These trends were attributed to the significant thermal gradients present at both sites. Our data underscores the potential of Li isotopes as a novel geothermometer tool, although further calibration work is required.
DOI: 10.17632/zx8zvk3pw2
title: CARMA-F (CARibbean MAngroves, compilation of fossil pollen records from the Late Cretaceous to the Pliocene)

description: CARMA-F (CARibbean MAngroves-Fossil) is a dataset that gathers the published fossil pollen records of mangrove taxa from the Caribbean region. The latest update includes nearly 90 localities ranging from the Late Cretaceous to the Pliocene. This dataset has been compiled to facilitate the study of the origin, evolution and diversification of Caribbean mangroves, along with the main environmental drivers involved. The data contained in CARMA-F have been used in a collection of papers by the author organized chronologically that discuss the Eocene origin, the Eocene/Oligocene evolutionary turnover and the Neogene diversification of these iconic tropical/subtropical coastal ecosystems, as occurred in the Neotropical Caribbean region. CARMA-F is provided as a spreadsheet and is open to modifications to adapt it to the particular interests of each researcher. A detailed description of the dataset in available at https://www.mdpi.com/2223-7747/12/22/3852. The dataset remains open to further updates, as new data are published/retrieved.
DOI: 10.6084/m9.figshare.21062103.v1
title: The changes of IgE levels in type 2 inflammatory diseases after treatment of dupilumab: a systematic review and meta-analysis

description: Dupilumab is approved for multiple type 2 inflammatory diseases. In the treatment procedure, the changes of IgE levels need further analysis. We evaluated the changes of IgE levels through meta-analysis, aiming to provide a more comprehensive result. Databases were searched to select eligible publications. After being included, study quality was assessed. The standardized mean difference (SMD) was used as an evaluation. Seven studies were included. At week 4, the level of IgE did not decrease significantly, with SMD = −0.12 (95%CI: −0.31, 0.07) (<i>P</i> &gt; 0.05). At week 8, 12, 16, 24, and 52, the level of IgE decreased significantly, which was SMD = −0.26 (95%CI: −0.48, −0.03); −0.25 (95%CI: −0.32, −0.18); −0.49 (95%CI: −0.65, −0.33); −0.30 (95%CI: −0.38, −0.22); −0.40 (95%CI: −0.48, −0.32) (<i>P</i> &lt; 0.05). In AD studies, with the increase of IgE levels, due to the decrease in the total dose of dupilumab, the efficacy index showed a decreasing trend. Levels of IgE can be significantly decreased in patients with dupilumab treatment. In AD patients, the efficacy was related to total dose; for patients with high IgE levels, efficacy may be better with the dose increased.
DOI: 10.15468/dl.f7xy45
title: Occurrence Download

description: A dataset containing 3923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lappula occidentalis (S.Watson) Greene)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3923 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013283-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2n7j5pg2xj
title: Digiteo_seq3_IR-D

description: This dataset was recorded with an intel® RealSense™ Depth Camera D435i. The dataset was recorded in the car park of the laboratory Digiteo bât 660, using IR-D mode.
DOI: 10.17632/3gcssvpmxh
title: Data for "Extracting Extrapolative Beliefs from Market Prices: An Augmented Present-Value Approach"

description: This folder contains the code and manual for the replication of the results in "Extracting Extrapolative Beliefs from Market Prices: An Augmented Present-Value Approach"
DOI: 10.17632/wyx96j2pcj
title: Are the NCCN/SSO COVID-19 guidelines for delay in melanoma treatment associated with mortality risk?: Supplemental Files

description: Supplemental material for publication titled - "Are the NCCN/SSO COVID-19 guidelines for delay in melanoma treatment associated with mortality risk?" to be published in Journal of the American Academy of Dermatology
DOI: 10.17632/zr9kwy979w
title: Data for: Sparse representation of parametric dictionary based on fault impulse matching for wheelset bearing fault diagnosis

description: The data is the outer and inner race fault vibration data of wheelset bearings, the detail information about it can be found in the paper.
DOI: 10.6084/m9.figshare.1284461.v1
title: Part 1 of LTSTM data set from March 2005

description: This is the first part of a low temperature STM data set from March 2005.
DOI: 10.6084/m9.figshare.14374274.v4
title: Active fire detections in the Amazon

description: The active fire inventory (2016–2019) for the Amazon compiled by processing more than 300000 Sentinel-2 MSI images.<br>
DOI: 10.6084/m9.figshare.19403006.v1
title: spss data.sav

description: Data was collected from two different studies conducted for the undergraduate student E-learning fall semester 2020 experience at the University of Science and Technology Fujairah (USTF) in the United Arab Emirates. The two studies were conducted using an online questionnaire via Google Forms. Students were invited to participate voluntarily by email. They were asked to answer questions regarding their distance learning experience during their 2020 academic year.
DOI: 10.6084/m9.figshare.26828962.v1
title: CldNetV2 - 202210

description: Retrieval of all-day cloud property based on satellite remote sensing dataGithub page: https://github.com/metdai/PMD-CldNetV2
DOI: 10.6084/m9.figshare.3103078.v2
title: It’s Your Library: Using Library of Congress material in your classroom to teach historical thinking

description: Conference presentation with a goal to help inservice teachers use the Library of Congress and primary sources to engage their students in historical thinking.
DOI: 10.17632/gyh4r5n8kb
title: End-user Profiles

description: This document includes the technical information and the comfort preferences of 20 different residential end-users created by a uniform random function.
DOI: 10.25378/janelia.24088431.v1
title: Single cell reconstruction data from MouseLight database and related Matlab analysis scripts

description: This document describes how to identify and extract ALM neurons from the MouseLight database of individual reconstructed neurons (https://ml-neuronbrowser.janelia.org/) to define ALM projection zones (relevant to Chen, Liu et al., Cell, 2023). All scripts are in Matlab R2022b./MouseLight_figshare/MouseLightComplete contains all reconstructed single neurons from the MouseLight data set, in .json and .swc formats.Use ‘ExtractMouseLightNeuronsFromJsonFiles.m’ to extract MouseLight neuron ID, soma coordinates and annotation, and axon coordinates from the above directory.Use ‘ExtractMouseLightALMneurons.m’ to identify and extract ALM neurons from the MouseLight data set. ALM neurons are defined based on functional maps of ALM (photoinhibition) in the CCF coordinate system, contained in ‘ALM_functionalData.nii’ (from Li, Daie, et al Nature, 2016).Use ‘ALMprojDensity.m’ to compute and generate an ALM projection map based on axonal density. The map is saved in ‘ALM_mask_150um3Dgauss_Bilateral.mat’ as smoothed (3D Gaussian, sigma = 150 um) axonal density in a 3D matrix: F_smooth.First axis: dorsal-ventral, second axis: medial-lateral, third axis: anterior-posterior.Use ‘medial_lateral_ALMprojDensities.m’ to compute and generate medial and lateral ALM projection maps separately.Medial ALM soma location &lt; 1.5 mm from the midline; lateral ALM soma locations &gt; 1.5 mm from the midline.The maps are saved in ‘medialALM_mask_150um3Dgauss_Bilateral.mat’ and ‘lateralALM_mask_150um3Dgauss_Bilateral.mat’ as smoothed (3D Gaussian, sigma = 150 um) axonal density in 3D matrices, respectively.Use ‘PlotALMinCCF.m’ to plot voxels of ALM in CCF, defined by the functional maps in ‘ALM_functionalData.nii’.Use ‘PlotMouseLightALMneurons.m’ to plot ALM neurons (all, medial, or lateral) in CCF; figures are saved in .tiff format.Other functions:‘loadTifFast.m’ is called to load CCF .tif file (Annotation_new_10_ds222_16bit.tif).‘plotCCFbrain.m’ is called to plot an isosurface of the CCF brain (Annotation_new_10_ds222_16bit.tif).<br>
DOI: 10.6084/m9.figshare.12670856.v7
title: Eukdetect database

description: Eukdetect marker and taxonomy databases.
DOI: 10.6084/m9.figshare.12915971.v4
title: Supplementary material: New distributional opportunities with niche innovation in Eurasian snowfinches

description: Supplementary Material for the manuscript "New Distributional Opportunities with Niche Innovation in Eurasian Snowfinches"<br>Table S1Figure S1Figure S2Figure S3<br>Initial_data.zip. Compressed folder containing prepared and organized initial data to perform further analyses.Commented_script.pdf. PDF file containing all R code used to perform the analyses described in methods.Commented_script.Rmd. Rmarkdown file to produce PDF containing all R code used to perform the analyses described in methods.<br>Histograms_joined.pdf. Document containing histogram plots that help in identifying how the occurrence data are distributed across the values of all variables inside accessible areas (<b>Ms</b>). Ranges_joined.zip. Compressed folder with csv files containing ranges of values of all variables found in occurrence records and accessible areas (<b>Ms</b>) of each species. Character_tables_joined.zip. Compressed folder with csv files containing tables with niche characters derived from extractions of values from all variable layers using occurrence data and the accessible areas (<b>Ms</b>) for each species. Reconstruction_figures.zip. Compressed folder containing all figures representing ancestral niche reconstructions and niche evolution considering 15 variables, maximum likelihood and maximum parsimony methods, and three distinct phylogenetic trees.<br> Variability_in_reconstructions_joined.zip. Compressed folder with csv files containing tables with the results of analysis of variability in reconstructions for the sample of 1350 a <i>posteriori </i>trees.<br>
DOI: 10.6084/m9.figshare.2245810.v1
title: Dataset from Bohol

description: Dataset contains following files:overlap.csv-Activity records of selected species of terrestrial vertebrates camera-trapped during survey on Bohol Island, Philippines. Columns represent sites of survey (Zone), species captured (Sps) and time of record in 0-1 format (Time) <br> RAI.xls-number of independent events of all camera-trapped taxa on Bohol island and calculation of the relative abundance indices <br> estimatesS_data.xls-matrix of detection (0-1 format) of 18 recorded vertebrate species (columns) on Bohol in 2885 trap days (raws) for computation of species accumulation curve by EstimateS.
DOI: 10.6084/m9.figshare.27195720.v1
title: <i>Harmonized, Standardized, and Corrected Crowd-Sourced Low-Cost Sensor </i>PM<sub>2.5 </sub><i>Data f</i><i>rom </i><i>Sensor.community and PurpleAir Networks </i><i>Across Europe</i>

description: Low-Cost Air Quality Sensors (LCS) are compact, affordable devices designed to measure various air pollutants, including particulate matter (PM<sub>2.5</sub>, PM<sub>10</sub>), nitrogen dioxide (NO<sub>2</sub>), ozone (O<sub>3</sub>), and volatile organic compounds (VOCs). Unlike traditional reference monitoring stations, which are large, expensive, and often located in fixed positions, LCSs are more accessible option for air quality monitoring, particularly for community and citizen engagement. LCSs can be installed in diverse locations, including neighborhoods, schools, and community centers. Many LCS networks provide (near) real-time data.LCSs have certain limitations in terms of accuracy and reliability compared to reference monitoring network data, especially when they are citizen-operated. This dataset provides Quality Controlled (QC) PM<sub>2.5</sub> measurements from LCSs at two processing levels: raw and corrected, at European scale. These measurements were processed using a framework called FILTER — Framework for Improving Low-Cost Technology Effectiveness and Reliability. FILTER has been applied to PM<sub>2.5</sub> data from the two largest citizen-operated LCS networks in Europe: sensor.community (https://sensor.community/en/) and PurpleAir (https://www2.purpleair.com/).The longitude and latitude of each unique sensor location are provided in a separate CSV table called “Sensor_Location”. Users can locate sensor IDs within their region of interest and then identify the desired sensors from the dataset based on the table names. For convenience, the sensors are organized by the country ISO 3166-1 three letter codes (ISO 3166-1 alpha-3). More Information is Provided in <b>Read Me (Data Descriptor)</b> file.DisclaimerIf the original low-cost sensor data from Sensor.Community or PurpleAir is required, we refer users to the original APIs of those sensor networks. This dataset, however, is more suitable for users who need quality-controlled/flagged data along with corrected values at hourly resolution.NILU makes no warranty of any kind, express or implied, concerning the provided data and information, including but not limited to any warranties of merchantability or fitness for any particular purpose. NILU assumes no responsibility or legal liability concerning the data’s accuracy, reliability, completeness, timeliness, or usefulness.<br>