cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.8mh95a
title: Data for: Attosecond electron microscopy by free-electron homodyne detection

description: Figure source data supporting the publication "Attosecond electron microscopy by free-electron homodyne detection" 
All plots from the manuscript can be replotted using the data sets in the folder &lt;code&gt;data&lt;/code&gt; and the Jupyter Notebook &lt;code&gt; plot_script.ipynb&lt;/code&gt;.
You can use this data repository interactively - click on the icon to launch a Jupyter session with Binder. &lt;a href="https://mybinder.org/v2/dataverse/10.17617/3.8MH95A" rel="nofollow" target="_blank"&gt;&lt;img src="https://mybinder.org/badge_logo.svg" class="img-responsive"&gt;&lt;/a&gt;
DOI: 10.21233/4qmb-vq31
title: Oostvierdeparten pollen dataset

description: Raw data for the Oostvierdeparten pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25505/fiz.icsd.cc2m4brw
title: CSD 2417248: Experimental Crystal Structure Determination

description: Related Article: Juan Andrés Nieto-Simón, Marta María González-Barrios, Adrián Gómez-Herrero, María Teresa Fernández-Díaz, Jesús Prado-Gonjal, Elizabeth Castillo-Martínez|2025|Inorg.Chem.|64|8578|doi:10.1021/acs.inorgchem.4c05579
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17617/3.l50q6i
title: Emergence of fluctuating hydrodynamics in chaotic quantum systems

description: Data presented in the publication.
DOI: 10.25505/fiz.icsd.cc2m4bsx
title: CSD 2417249: Experimental Crystal Structure Determination

description: Related Article: Juan Andrés Nieto-Simón, Marta María González-Barrios, Adrián Gómez-Herrero, María Teresa Fernández-Díaz, Jesús Prado-Gonjal, Elizabeth Castillo-Martínez|2025|Inorg.Chem.|64|8578|doi:10.1021/acs.inorgchem.4c05579
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17617/3.cxkgcx
title: Data for "An ancient genome perspective on the dynamic history of the prehistoric Jomon people in and around the Japanese archipelago"

description: This collection includes the EIGENSTRAT format genotype data of 23 Jomon-related ancient individuals for the 1240K SNP panel. These individuals were in-depth re-analyzed in the study "An ancient genome perspective on the dynamic history of the prehistoric Jomon people in and around the Japanese archipelago". These individuals were previously published elsewhere.
DOI: 10.25505/fiz.icsd.cc2m4bty
title: CSD 2417250: Experimental Crystal Structure Determination

description: Related Article: Juan Andrés Nieto-Simón, Marta María González-Barrios, Adrián Gómez-Herrero, María Teresa Fernández-Díaz, Jesús Prado-Gonjal, Elizabeth Castillo-Martínez|2025|Inorg.Chem.|64|8578|doi:10.1021/acs.inorgchem.4c05579
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17617/3.vmdbso
title: Experience reduces route selection on conspecifics by the collectively migrating white stork

description: The locations of migratory storks prepared for step-selection functions using convective velocity scale (w_star) and the probability density function of a utilization distribution from autocorrelated kernel density estimates (ud_pdf) as covariates.
description: R, 4.3.2
DOI: 10.17617/3.qekz5x
title: Data set for "AiroTouch: enhancing telerobotic assembly through naturalistic haptic feedback of tool vibrations"

description: We encourage viewers to select the "Tree" view, rather than "Table" view, in order to see the files organized by their respective folders. The user study and its result analysis were described in the corresponding publication. This dataset includes the following: 1) A readme file explaining our user study and the data. 2) Consent form. 3) The first three participants’ data in unzipped folders and all 30 participants’ data in zipped files. Each of them includes raw acceleration data, raw force data, questionnaire responses, robot motion videos without audio, and heart rate data. 4) The gain choices of the haptic feedback and the hand size data of each participant. 5) A sample MATLAB code to plot acceleration data and force data. This project is within the EXC IntCDC Research Project 16. Partially supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2120/1 – 390831618.
description: Matlab
DOI: 10.17617/3.fnxoa3
title: Phase diagrams of bone remodeling using a 3D stochastic cellular automaton

description: We propose a 3D stochastic cellular automaton model, governed by evolutionary game
theory, to simulate bone remodeling dynamics. The model includes four voxel states:
Formation, Quiescence, Resorption, and Environment. We simulate the Resorption and
Formation processes on separate time scales to explore the parameter space and derive
a phase diagram that illustrates the sensitivity of these processes to parameter changes.
Combining these results, we simulate a full bone remodeling cycle. Furthermore, we
show the importance of modeling small neighborhoods for studying local bone
microenvironment controls. This model can guide experimental design and, in
combination with other models, it could assist to further explore external impacts on
bone remodeling. Consequently, this model contributes to an improved understanding of
complex dynamics in bone remodeling dynamics and exploring alterations due to
disease or drug treatment.
DOI: 10.17617/3.x1r0aq
title: Energy-loss reconstructions of rabbit RyR1 reconstructed by REEL analysis

description: Dataset of electron energy-loss reconstructions which were created by REEL analysis. Maps are labelled by energy-loss in eV. They cover the range from -7.5 eV to 729.75 eV in 0.75 eV steps. A scaling factor of 532/515 yields more accurate energy-loss values. Low-pass filtering is advantageous for display. The sample is Ryanodine Receptor 1, purified from rabbit skeletal muscle. The reference reconstruction was refined to 24 Å resolution.
description: RELION, 4.0beta
description: Hyperspy, 1.6.4
DOI: 10.17617/3.auerwm
title: Energy-loss reconstructions of worm hemoglobin (lumbricus terrestris erythrocruorin) reconstructed by REEL analysis

description: Dataset of electron energy-loss reconstructions which were created by REEL analysis. Maps are labelled by energy-loss in eV. They cover the range from -7.5 eV to 729.75 eV in 0.75 eV steps. A scaling factor of 532/515 yields more accurate energy-loss values. Low-pass filtering is advantageous for display. The sample is worm hemoglobin (erythrocruorin) from lumbricus terrestris, which was extracted from earth worm blood. The reference reconstruction was refined to 27 Å resolution.
description: RELION, 4.0beta
description: Hyperspy, 1.6.4
DOI: 10.17617/3.7wqans
title: High-cadence monitoring of the emission properties of magnetar XTE J1810-197 with the Stockert radio telescope

description: Data that has been derived from monitoring the magnetar XTE J1810-197 with the Stockert radio telescope. Provided are the list of observations without technical issues, the number of detected single pulses + uncertainty, the average flux density of the folded profile + uncertainty, the duration of the observation and the date + MJD of the observation. Additionally the set of detected single pulses is included with the fluence, mean flux density, width, MJD of the start of the observation and the time within the observation.
When using this data please cite the corresponding publication with the title 'High-cadence monitoring of the emission properties of magnetar
XTE J1810-197 with the Stockert radio telescope'.
description: Presto, 28Jun17
description: FETCH, 0.1.8
DOI: 10.17617/3.w3vhtc
title: Gemalde selection (thumbnails)

description: A selection of images from https://foto.biblhertz.it/.

Term and conditions apply for the use of each image in a larger format than the one provided. Please always refer to terms and conditions of use on the website. See the Custom Terms.

The dataset selection includes catalogued images of MIDAS objects from the Photographic Collection with "Sachbegriff (a5230)"=Gemälde. 

There are 21871 objects matching the query with 17689 fotos associated which also contain an indication of the filename.

These are stored in a format with the longest side large 320px maximum which is used as thumbnails and provided without restrictions. 

See https://foto.biblhertz.it/cms/data for additional information on accessibility of metadata. and additional formats. Reuse of other accessible formats is subject to Terms and Conditions and to copyright as stated for each single case.

A CSV file is provided which, for each image includes a link to the file, a link to the full MIDAS XML via OAI-PMH to retrieve updated structured data in XML, but also stringyfied information extracted from the entire catalogued object and for the foto. Not all digitised versions of images are listed. The Xquery script used to generate the CSV is also provided. It can be adapted and run on another MIDAS XML dataset.

Note that images with ids like bh340983 may return an image bh340983_recto. Not all images are available at the moment, as the process of ingesting data from the digitizazion project is ongoing. The python script used to download the files is provided as well to allow for a rerun. Images may include metadata. additional formats of information can be obtained starting from the object id 08* and from the foto identifier bh* . 

Digital images can be, native, scans or prints, or digitised negatives. An updated dump of the MIDAS XML can be obtained upon request. Digital images of paintings which are natively digital may include images of the back side of the paintings.

All these are derivatives of archived images and may not contain full embedded metadata about the images.
DOI: 10.17617/3.blqz5x
title: In Solution Identification of the Lysine-Cysteine Redox Switch with a NOS Bridge in Transaldolase by Sulfur K-edge X-ray Absorption Spectroscopy

description: Experimental and computational dataset for In Solution Identification of the Lysine-Cysteine Redox Switch with a NOS Bridge in Transaldolase by Sulfur K-edge X-ray Absorption Spectroscopy.
DOI: 10.17617/3.ejze2n
title: 2SMART

description: Surface Soil Moisture from ARTiﬁcial intelligence
DOI: 10.17617/3.6w6bgk
title: Supporting Data and Code to illustrate Finite Size Scaling of Constant Charge Energetics

description: Contains data and code to plot the finite size scaling of the energy difference of a desorbed and an adsorbed proton in constant charge density functional theory calculations.

requires ase &gt; 3.22.1 (tested with ase 3.22.1, pandas 2.1.3, python 3.9.18)
DOI: 10.21233/61sx-xy05
title: Bolotnya pollen dataset

description: Raw data for the Bolotnya pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.myfh42
title: Data and Code - Heart rate monitoring reveals differential seasonal energetic trade-offs in male noctule bats

description: Data sets and connected code.
DOI: 10.17617/3.hy4ezm
title: Data of On the variability of phytoplankton photophysiology along a latitudinal transect in the North Atlantic surface ocean

description: Dataset accompanying manuscript "On the variability of phytoplankton photophysiology over a latitudinal transect in the North Atlantic surface ocean" (Aardema et al., submitted to JGR: Biogeosiences, 2024). The methods to collect this dataset are described in the paper mentioned above, please refer to this paper when using this dataset. In case further data or information regarding the dataset is needed, please contact the corresponding authors. Each file contains a tab-separated table, preceded by a header describing the individual columns. 

Underway data on phytoplankton photophysiology along a latitudinal transect from the polar circle to the equator in the eastern North Atlantic sailed by the S/Y Eugen Seibold. Datasets include parameters from Fast Repetition Rate fluorometry (FRRf) and Flow Cytometry (FCM) with nearest matched environmental parameters in the surface ocean (all sampled from 3 m water depth).
DOI: 10.17617/3.vkq3zm
title: From electrons to phase diagrams with classical and machine learning potentials: automated workflows for materials science with pyiron

description: This repository consists of two-datasets:

1. Used for fitting of the interatomic potentials
2. Free-energy calculations for the phase diagrams
DOI: 10.17617/3.syqzec
title: Tracking a Spin-Polarized Superconducting Bound State across a Quantum Phase Transition

description: The data set contains raw and processed data from scanning tunneling spectroscopy to demonstrate the changes in the spectral features of Yu-Shiba-Rusinov states across the quantum phase transition in the presence of a magnetic field.
description: Matlab, R2020a
DOI: 10.17617/3.2wnzy7
title: How a salt pan ant Cataglyphis fortis navigates artificially complex environments

description: Data for the publication about idiosyncrasy in desert ants.
DOI: 10.17617/3.s2dpue
title: Multiscale simulations of the CP43 photosynthetic antenna complex: QM/MM, TD-DFT and PMM data

description: Primary computational data used in multiscale studies of the CP43 photosynthetic antenna.
DOI: 10.17617/3.1fpw2c
title: Force-field-based energy minimizations of cellulose crystals

description: Structures and energy terms for cellulose Ibeta and II crystals composed of 52 chains of cellulose 6-mers, 8-mers, 10-mers, or 12-mers obtained from energy minimizations in two force fields.
description: Amber, 20
DOI: 10.17617/3.y9pfvw
title: Mobilization of cholesterol induces the transition from quiescence to growth in Caenorhabditis elegans through steroid hormone and mTOR signaling data

description: data for publication: " Mobilization of cholesterol induces the transition from quiescence to growth in Caenorhabditis elegans through steroid hormone and mTOR signaling"
description: Prism, 10.1.1 (270)
DOI: 10.17617/3.d9fssn
title: Data from single chamber Mg/Ca analyses of Globigerinoides ruber for paleo-proxy calibration using femtosecond LA-ICP-MS

description: This collection contains data for paper "Single chamber Mg/Ca analyses of Globigerinoides ruber for paleo-proxy calibration using femtosecond LA-ICP-MS" (Fischer et al., 2024). When using the data, please refer to the paper mentioned above. If further data needed, please contact the corresponding authors.
description: All files are UTF-8 encoded. Each file contains a tab-separated table, which is preceded by a header describing the individual columns.
DOI: 10.17617/3.uxuimi
title: X-ray Absorption and Emission Spectroscopy of N2S2 Cu(II)/(III) Complexes

description: Data for manuscript entitled: "X-ray Absorption and Emission Spectroscopy of N2S2 Cu(II)/(III) Complexes"
DOI: 10.17617/3.ygo7ew
title: GenWiki: A Dataset of 1.3 Million Content-Sharing Text and Graphs for Unsupervised Graph-to-Text Generation

description: Paper: "GenWiki: A Dataset of 1.3 Million Content-Sharing Text and Graphs for Unsupervised Graph-to-Text Generation" (COLING 2020) by Zhijing Jin, Qipeng Guo, Xipeng Qiu, and Zheng Zhang. (https://aclanthology.org/2020.coling-main.217/)
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Abstract: Data collection for the knowledge graph-to-text generation is expensive. As a result, research on unsupervised models has emerged as an active field recently. However, most unsupervised models have to use non-parallel versions of existing small supervised datasets, which largely constrain their potential. In this paper, we propose a large-scale, general-domain dataset, GenWiki. Our unsupervised dataset has 1.3M text and graph examples, respectively. With a human-annotated test set, we provide this new benchmark dataset for future research on unsupervised text generation from knowledge graphs.
DOI: 10.17617/3.endmti
title: Wild-MuPPET - Multi-view posture dataset of foraging pigeons in the wild

description: Wild-MuPPET is a multi-view posture dataset of foraging pigeons outdoors, with 500 frames of 3D-ground truth and 2000 frames of 2D-ground truth of 9 keypoints.

Paper: https://doi.org/10.48550/arXiv.2308.15316
Git repository: https://github.com/alexhang212/3D-MuPPET
DOI: 10.21233/f883-0y94
title: Borok testate amoebae surface sample dataset

description: Raw data for the Borok testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.jxbyho
title: Gut microbial community of the Eurasian spruce bark beetle Ips typographus across its life stages

description: We conducted a study to characterize and quantify the gut microbial communities of the Eurasian spruce bark beetle throughout its development. We provide the following supporting data:
&lt;br&gt;1. R scripts used to curate and analyze the amplicon sequencing datasets
&lt;br&gt;2. ASV tables resulting from the fungal and bacterial amplicon sequencing analysis
&lt;br&gt;3. Bacterial titers: raw qPCR data plus consolidated dataset and R scripts used for analysis
&lt;br&gt;4. Fungal titers: raw qPCR data plus consolidated dataset and R scripts used for analysis
DOI: 10.17617/3.ny3y1r
title: Intracellular symbiont with vertical transmission that is widespread across insect orders

description: Insects engage in manifold interactions with bacteria that can shift along the parasitism–mutualism continuum. However, only a small number of bacterial taxa managed to successfully colonize a wide diversity of insects, by evolving mechanisms for host-cell entry, immune evasion, germline tropism, reproductive manipulation, and/or by providing benefits to the host that stabilize the symbiotic association. Here we report on the discovery of an Enterobacterales endosymbiont (‘Candidatus Dolus’) that is widespread across at least six insect orders and occurs at high prevalence within host populations. Fluorescence in situ hybridization in several Coleopteran and one Dipteran species revealed Dolus’ intracellular presence in all host life stages and across tissues, with a high abundance in the adult germline, indicating transovarial vertical transmission. Symbiont genome sequencing across 16 different host taxa revealed a high degree of functional conservation in the eroding and transposon-rich genomes. All sequenced Dolus genomes encode for multiple secretion systems, alongside effectors and toxin-antitoxin systems, which likely facilitate host-cell entry and interactions with the host. However, Dolus-infected insects show no obvious signs of disease, and biosynthetic pathways for several amino acids and cofactors encoded by the bacterial genomes suggest that the symbionts may also be able to provide benefits to the hosts. A lack of host-symbiont cospeciation provides evidence for occasional horizontal transmission, so Dolus’ success is likely based on a mixed transmission mode. Our findings uncover a hitherto undescribed and widespread insect endosymbiont that may present valuable opportunities to unravel the molecular underpinnings of symbiosis establishment and maintenance.
DOI: 10.17617/3.nvrra9
title: CLadder: Assessing Causal Reasoning in Language Models

description: Paper: "CLadder: Assessing Causal Reasoning in Language Models" (NeurIPS 2023) by Zhijing Jin*, Yuen Chen*, Felix Leeb*, Luigi Gresele*, Ojasv Kamal, Zhiheng Lyu, Kevin Blin, Fernando Gonzalez, Max Kleiman-Weiner, Mrinmaya Sachan, Bernhard Schölkopf. (http://arxiv.org/abs/2312.04350)
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Abstract: The ability to perform causal reasoning is widely considered a core feature of intelligence. In this work, we investigate whether large language models (LLMs) can coherently reason about causality. Much of the existing work in natural language processing (NLP) focuses on evaluating commonsense causal reasoning in LLMs, thus failing to assess whether a model can perform causal inference in accordance with a set of well-defined formal rules. To address this, we propose a new NLP task, causal inference in natural language, inspired by the "causal inference engine" postulated by Judea Pearl et al. We compose a large dataset, CLadder, with 10K samples: based on a collection of causal graphs and queries (associational, interventional, and counterfactual), we obtain symbolic questions and ground-truth answers, through an oracle causal inference engine. These are then translated into natural language. We evaluate multiple LLMs on our dataset, and we introduce and evaluate a bespoke chain-of-thought prompting strategy, CausalCoT. We show that our task is highly challenging for LLMs, and we conduct an in-depth analysis to gain deeper insight into the causal reasoning abilities of LLMs. Our data is open-sourced at https://github.com/causalNLP/cladder, and our code can be found at https://huggingface.co/datasets/causalnlp/CLadder.