cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9959126.v1
title: Supplementary Material for: Estradiol Enables Chronic Corticosterone to Inhibit Pulsatile Luteinizing Hormone Secretion and Suppress Kiss1 Neuronal Activation in Female Mice

description: <b><i>Introduction:</i></b> Two common responses to stress include elevated circulating glucocorticoids and impaired luteinizing hormone (LH) secretion. We have previously shown that a chronic stress level of corticosterone can impair ovarian cyclicity in intact mice by preventing follicular-phase endocrine events. <b><i>Objective:</i></b> This study is aimed at investigating if corticosterone can disrupt LH pulses and whether estradiol is necessary for this inhibition. <b><i>Methods:</i></b> Our approach was to measure LH pulses prior to and following the administration of chronic corticosterone or cholesterol in ovariectomized (OVX) mice treated with or without estradiol, as well as assess changes in arcuate kisspeptin (Kiss1) neuronal activation, as determined by co-expression with c-Fos. <b><i>Results:</i></b> In OVX mice, a chronic 48 h elevation in corticosterone did not alter the pulsatile pattern of LH. In contrast, corticosterone induced a robust suppression of pulsatile LH secretion in mice treated with estradiol. This suppression represented a decrease in pulse frequency without a change in amplitude. We show that the majority of arcuate Kiss1 neurons contain glucocorticoid receptor, revealing a potential site of corticosterone action. Although arcuate <i>Kiss1</i> and <i>Tac2</i> gene expression did not change in response to corticosterone, arcuate Kiss1 neuronal activation was significantly reduced by chronic corticosterone, but only in mice treated with estradiol. <b><i>Conclusions:</i></b> Collectively, these data demonstrate that chronic corticosterone inhibits LH pulse frequency and reduces Kiss1 neuronal activation in female mice, both in an estradiol-dependent manner. Our findings support the possibility that enhanced sensitivity to glucocorticoids, due to ovarian steroid milieu, may contribute to reproductive impairment associated with stress or pathophysiologic conditions of elevated glucocorticoids.
DOI: 10.6084/m9.figshare.9959135.v1
title: List of normalized gene expression level (FPKM; ESCs and Embryos).xlsx

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The expression level was normalized by the HTSeq-count program.
DOI: 10.6084/m9.figshare.9959129.v2
title: Metadata record for: Noise-free simulation of an FT-IR imaging hyperspectral dataset of pancreatic biopsy core bound by experiment

description: This dataset contains key characteristics about the data described in the Data Descriptor Noise-free simulation of an FT-IR imaging hyperspectral dataset of pancreatic biopsy core bound by experiment. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9959060
title: grid.1002.3

description: What does Australasian Research Look Like Data for institution
DOI: 10.6084/m9.figshare.9959129.v1
title: Metadata record for: Noise-free simulation of an FT-IR imaging hyperspectral dataset of pancreatic biopsy core bound by experiment

description: This dataset contains key characteristics about the data described in the Data Descriptor Noise-free simulation of an FT-IR imaging hyperspectral dataset of pancreatic biopsy core bound by experiment. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.9959135.v2
title: List of normalized gene expression level (FPKM; ESCs and Embryos).xlsx

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The expression level was normalized by the HTSeq-count program.
DOI: 10.6084/m9.figshare.9959135.v3
title: List of normalized gene expression level (FPKM; ESCs and Embryos).xlsx

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The expression level was normalized by the HTSeq-count program.
DOI: 10.6084/m9.figshare.9959135.v5
title: List of normalized gene expression level (FPKM; ESCs and Embryos)

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The expression level was normalized by the HTSeq-count program.
DOI: 10.6084/m9.figshare.9959135.v4
title: List of normalized gene expression level (FPKM; ESCs and Embryos)

description: Data set of the transcriptome of pig embryonic stem cells and preimplantation embryos. The expression level was normalized by the HTSeq-count program.
DOI: 10.6084/m9.figshare.9958946
title: EEG raw data.zip

description: This file contains the EEG raw data of 14 participants in the laboratory experiment and of 89 participants in the fieldwork in Nangok-dong. As stated in the manuscript, this EEG dataset was analysed to investigated valence values that show positive/negative emotions. This data was analysed by MATLAB and EEGLAB. The EEG raw data of 10 participants in the fieldwork were removed in the final analysis due to the issue of poor connection between laptop and EEG device.
DOI: 10.6084/m9.figshare.9958931
title: A systemic overreaction to years versus decades of warming in a subarctic grassland ecosystem - data

description: Standardised, processed data relating to Nature Ecology & Evolution article with above title.
DOI: 10.6084/m9.figshare.9958688
title: Metadata record for: 7 Tesla MRI of the ex vivo human brain at 100 micron resolution

description: This dataset contains key characteristics about the data described in the Data Descriptor 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9958676
title: figure_acp.zip

description: This is data for the manuscript of https://doi.org/10.5194/acp-19-1-2019.
DOI: 10.6084/m9.figshare.9958676.v1
title: figure_acp.zip

description: This is data for the manuscript of https://doi.org/10.5194/acp-19-1-2019.
DOI: 10.6084/m9.figshare.9958670
title: Dataset 1.xlsx

description: Data from CRC patients dignaosed between 2009 and 2015 at KATH, Ghana<br>
DOI: 10.6084/m9.figshare.9958673
title: Data file 1.xlsx

description: The data-set consists of CRC patients’ demographic data, clinico_pathological characteristics, and quality of life data
DOI: 10.6084/m9.figshare.9958688.v2
title: Metadata record for: 7 Tesla MRI of the ex vivo human brain at 100 micron resolution

description: This dataset contains key characteristics about the data described in the Data Descriptor 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9958688.v1
title: Metadata record for: 7 Tesla MRI of the ex vivo human brain at 100 micron resolution

description: This dataset contains key characteristics about the data described in the Data Descriptor 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9958649
title: SM 10 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Loadings of the phylogenetic principal component analysis (see text and Fig. 5).
DOI: 10.6084/m9.figshare.9958658
title: SM 9 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Result summary of the AN(C)OVA analyses testing for a difference among the locomotor types for each trabecular parameter of interest of all studied Volumes Of Interest (VOIs). Abbreviations: SC, whether the parameter is significantly correlated to the estimated specimens’ body mass (BMsp, see Material and Methods), which also indicates whether an ANOVA (no correlation) or ANCOVA (significant correlation) was run; lambda, Pagel’s lambda used to scale the timetree used in the phylogenetic AN(C)OVA (see Material and Methods); <i>p</i>-value and <i>F</i>-value correspond to the influence of the locomotor type on the parameter.
DOI: 10.6084/m9.figshare.9958652
title: SM 1 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Raw parameters. Excel workbook containing a worksheet per Volume Of Interest (VOI). Abbreviations: Hp, humeral head; Hd, humeral trochlea; Fp, femoral head; Fd, femoral lateral condyle. Collections housing our sampled specimens are the Museum für Naturkunde Berlin (MAM ZMB), the Field Museum of Natural History (FMNH), the Natural History Museum Denmark (CN), and the Narodní Museum (P6V). See BoneJ [41] documentation for parameters’ abbreviations.
DOI: 10.6084/m9.figshare.9958655
title: SM 4 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Intra-observer error assessment.
DOI: 10.6084/m9.figshare.9958658.v1
title: SM 9 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Result summary of the AN(C)OVA analyses testing for a difference among the locomotor types for each trabecular parameter of interest of all studied Volumes Of Interest (VOIs). Abbreviations: SC, whether the parameter is significantly correlated to the estimated specimens’ body mass (BMsp, see Material and Methods), which also indicates whether an ANOVA (no correlation) or ANCOVA (significant correlation) was run; lambda, Pagel’s lambda used to scale the timetree used in the phylogenetic AN(C)OVA (see Material and Methods); <i>p</i>-value and <i>F</i>-value correspond to the influence of the locomotor type on the parameter.
DOI: 10.6084/m9.figshare.9958652.v1
title: SM 1 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Raw parameters. Excel workbook containing a worksheet per Volume Of Interest (VOI). Abbreviations: Hp, humeral head; Hd, humeral trochlea; Fp, femoral head; Fd, femoral lateral condyle. Collections housing our sampled specimens are the Museum für Naturkunde Berlin (MAM ZMB), the Field Museum of Natural History (FMNH), the Natural History Museum Denmark (CN), and the Narodní Museum (P6V). See BoneJ [41] documentation for parameters’ abbreviations.
DOI: 10.6084/m9.figshare.9958643
title: SM 7 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Mean, standard deviation, and range of trabecular parameters of interest for each mustelid locomotor type. Data for all studied Volumes Of Interest (VOIs).
DOI: 10.6084/m9.figshare.9958649.v1
title: SM 10 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Loadings of the phylogenetic principal component analysis (see text and Fig. 5).
DOI: 10.6084/m9.figshare.9958655.v1
title: SM 4 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Intra-observer error assessment.
DOI: 10.6084/m9.figshare.9958670.v2
title: Data set 1.xlsx

description: Data from CRC patients dignaosed between 2009 and 2015 at KATH, Ghana<br>
DOI: 10.6084/m9.figshare.9958643.v1
title: SM 7 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Mean, standard deviation, and range of trabecular parameters of interest for each mustelid locomotor type. Data for all studied Volumes Of Interest (VOIs).
DOI: 10.6084/m9.figshare.9958631
title: SM 2 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Volume Of Interest (VOI) selection macro (ImageJ macro language).
DOI: 10.6084/m9.figshare.9958670.v3
title: Data set 1.xlsx

description: Data from CRC patients dignaosed between 2009 and 2015 at KATH, Ghana<br>
DOI: 10.6084/m9.figshare.9958631.v1
title: SM 2 from Trabecular bone architecture in the stylopod epiphyses of mustelids (Mammalia, Carnivora)

description: Volume Of Interest (VOI) selection macro (ImageJ macro language).
DOI: 10.6084/m9.figshare.9958535
title: Supplementary Material for: Epigenetic Coactivation of MAGEA6 and CT-GABRA3 Defines Orientation of a Segmental Duplication in the Human X Chromosome

description: The human genome harbors many duplicated segments, which sometimes show very high sequence identity. This may complicate assignment during genome assembly. One such example is in Xq28, where the arrangement of 2 recently duplicated segments varies between genome assembly versions. The duplicated segments comprise highly similar genes, including <i>MAGEA3</i> and <i>MAGEA6</i>, which display specific expression in testicular germline cells, and also become aberrantly activated in a variety of tumors. Recently, a new gene was identified, <i>CT-GABRA3</i>, the transcription of which initiates inside the segmental duplication but extends far outside. According to the latest genome annotation, <i>CT- GABRA3</i> starts near <i>MAGEA3</i>, with which it shares a bidirectional promoter. In an earlier annotation, however, the duplicated segment was positioned in the opposite orientation, and <i>CT-GABRA3</i> was instead coupled with <i>MAGEA6</i>. To resolve this discrepancy, and based on the contention that genes connected by a bidirectional promoter are almost always co-expressed, we decided to compare the expression profiles of <i>CT-GABRA3</i>,<i> MAGEA3</i>, and <i>MAGEA6</i>. We found that in tumor tissues and cell lines of different origins, the expression of <i>CT-GABRA3</i> was better correlated with that of <i>MAGEA6</i>. Moreover, in a cellular model of experimental induction with a DNA demethylation agent, activation <i>CT-GABRA3</i> was associated with that of <i>MAGEA6</i>, but not with that of <i>MAGEA3</i>. Together these results support a connection between <i>CT-GABRA3</i> and <i>MAGEA6</i> and illustrate how promoter-sharing genes can be exploited to resolve genome assembly uncertainties.
DOI: 10.6084/m9.figshare.9958505
title: PLSDB 2019_10_07

description: PLSDB files from 2019.10.07<br>
DOI: 10.15129/03b5240d-4392-4a87-9e51-7f9f33fd17cc
title: Data for: "Photonic Voltage Transducer with Lightning Impulse Protection for Distributed Monitoring of MV Networks"

description: The files in this dataset were created by testing novel optically-interrogated medium voltage (MV) voltage sensor against the requirements of IEC-61869-7 (replacing the old IEC-60044-7). The results were obtained by applying the standard accuracy type tests to the sensor.
DOI: 10.6084/m9.figshare.9958535.v1
title: Supplementary Material for: Epigenetic Coactivation of MAGEA6 and CT-GABRA3 Defines Orientation of a Segmental Duplication in the Human X Chromosome

description: The human genome harbors many duplicated segments, which sometimes show very high sequence identity. This may complicate assignment during genome assembly. One such example is in Xq28, where the arrangement of 2 recently duplicated segments varies between genome assembly versions. The duplicated segments comprise highly similar genes, including <i>MAGEA3</i> and <i>MAGEA6</i>, which display specific expression in testicular germline cells, and also become aberrantly activated in a variety of tumors. Recently, a new gene was identified, <i>CT-GABRA3</i>, the transcription of which initiates inside the segmental duplication but extends far outside. According to the latest genome annotation, <i>CT- GABRA3</i> starts near <i>MAGEA3</i>, with which it shares a bidirectional promoter. In an earlier annotation, however, the duplicated segment was positioned in the opposite orientation, and <i>CT-GABRA3</i> was instead coupled with <i>MAGEA6</i>. To resolve this discrepancy, and based on the contention that genes connected by a bidirectional promoter are almost always co-expressed, we decided to compare the expression profiles of <i>CT-GABRA3</i>,<i> MAGEA3</i>, and <i>MAGEA6</i>. We found that in tumor tissues and cell lines of different origins, the expression of <i>CT-GABRA3</i> was better correlated with that of <i>MAGEA6</i>. Moreover, in a cellular model of experimental induction with a DNA demethylation agent, activation <i>CT-GABRA3</i> was associated with that of <i>MAGEA6</i>, but not with that of <i>MAGEA3</i>. Together these results support a connection between <i>CT-GABRA3</i> and <i>MAGEA6</i> and illustrate how promoter-sharing genes can be exploited to resolve genome assembly uncertainties.
DOI: 10.6084/m9.figshare.9958505.v1
title: PLSDB 2019_10_07

description: PLSDB files from 2019.10.07<br>
DOI: 10.6084/m9.figshare.9958409
title: MOESM3 of Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate

description: Additional file 3: File S1. Information for all 12671 AMRs.
DOI: 10.6084/m9.figshare.9958412
title: MOESM4 of Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate

description: Additional file 4: File S2. Information for the 73 extended AMRs without SNVs.
DOI: 10.6084/m9.figshare.9958409.v1
title: MOESM3 of Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate

description: Additional file 3: File S1. Information for all 12671 AMRs.
DOI: 10.6084/m9.figshare.9958412.v1
title: MOESM4 of Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate

description: Additional file 4: File S2. Information for the 73 extended AMRs without SNVs.
DOI: 10.6084/m9.figshare.9958397
title: MOESM8 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 8: Table S3. Reactome pathways presenting high correlation between age-related expression fold change and early life gene body methylation patterns.
DOI: 10.6084/m9.figshare.9958403
title: MOESM9 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 9: Table S4. Reactome pathways presenting high correlation between age-related expression fold change and early life gene promoter methylation patterns.
DOI: 10.6084/m9.figshare.9958403.v1
title: MOESM9 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 9: Table S4. Reactome pathways presenting high correlation between age-related expression fold change and early life gene promoter methylation patterns.
DOI: 10.6084/m9.figshare.9958397.v1
title: MOESM8 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 8: Table S3. Reactome pathways presenting high correlation between age-related expression fold change and early life gene body methylation patterns.
DOI: 10.6084/m9.figshare.9958376
title: MOESM4 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 4: Table S2. List of Reactome pathways enriched with age-related DMRs separated by hypermethylation and hypomethylation.
DOI: 10.6084/m9.figshare.9958376.v1
title: MOESM4 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 4: Table S2. List of Reactome pathways enriched with age-related DMRs separated by hypermethylation and hypomethylation.
DOI: 10.6084/m9.figshare.9958370
title: MOESM3 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 3: Table S1. List of Reactome pathways enriched with age-related DMRs.
DOI: 10.6084/m9.figshare.9958370.v1
title: MOESM3 of Early-life DNA methylation profiles are indicative of age-related transcriptome changes

description: Additional file 3: Table S1. List of Reactome pathways enriched with age-related DMRs.
DOI: 10.6084/m9.figshare.9958331
title: Regulating emotions under exposure to negative out-group-related news material results in increased acceptance of out-groups

description: Negative emotions affect the acceptance of out-groups. Here, we investigated whether modifying negative emotions would affect perceptions of out-groups. We experimentally manipulated the use of two emotion regulation strategies: suppression of emotional expression and cognitive reappraisal, the latter involving reframing a situation to mitigate its emotional impact. Using a population-based sample (<i>N</i> = 317), we conducted an online randomized controlled trial. Participants regulated their emotions while reading threatening news about out-groups. Not only reappraisal, but also suppression increased immediate acceptance of out-groups. The effect of reappraisal was partly mediated by decreased disgust, suggesting unique effects of reappraisal on this emotion. In the suppression condition acceptance decreased at high levels of habitual emotion regulation, whereas reappraisal showed an opposite tendency. Previous research may have underestimated the importance of different emotion regulation strategies on prejudice, and that relatively simple interventions can affect prejudice. The findings are of interest to prejudice prevention programs.
DOI: 10.6084/m9.figshare.9958265
title: Sexual differences in daily foraging patterns among Great tits <i>Parus major</i> established by radio frequency identification (RFID) tags

description: Providing bird feeders is a very popular interaction between people and birds, and many aspects have been studied in detail. The utilisation of bird feeders in relation to the daylight pattern still needs more research, mostly due to technical problems. This is important for understanding optimal foraging and, in consequence, bird survival. The study was carried out in southern Poland during winter and early spring 2011. A total of 99 Great tits <i>Parus major</i> were tagged of which 50 individuals were recorded at the feeders (in total 2,771 records). The mean time spent at the feeder by Great tits was 4.3 ± 7.9 sec and was influenced by temperature. During the winter, both sexes showed a bimodal pattern of foraging activity: a first, early morning, peak and a second, evening, peak. In contrast, during early spring we found a significant bimodal pattern only for females with a sharp decrease before dusk. We confirmed that observed foraging patterns could be explained by the risk of starvation and by predator avoidance. Sexual differences in foraging are most probably related to their different activities in late winter/early spring, for example, time-consuming singing by males.