cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4773068
title: Pull Request Review Comments Dataset

description: <strong>Pull Request Review Comments (PRRC) Datasets</strong> Two datasets have been created from the gharchive website. The Pull Request Review Comment Event was selected from the set of available GitHub events. This dataset has been created for CARA: Chatbot for Automating Repairnator Actions as part of a master's thesis at KTH, Stockholm. First, a source dataset was downloaded from gharchive. That dataset ranges from January 2015 to December 2019. It consisted of 37,358,242 PRRCs and is over 12 Gigabytes in size. It took over 100 hours to download all the data files and extract PRRC from it. From this source dataset, two subsets were derived: Pull Request Review Comments Dataset: This is the dataset of the comments from the first 100,000 threads in the source dataset from gharchive. Pull Request Review Threads Dataset: This is the dataset of comments that were concatenated together if they were from the same thread. <strong>Description</strong> The dataset is stored in the JSONLines format, as was the source dataset from gharchive. For PRRC events, the source dataset contains the fields `comment_id`, `commit_id`, `url`, `author`, `created_at`, and `body`. `comment_id` is the field which specifies the ID GitHub uses for that comment. `commit_id` is the field which specifies the ID of the commit proposed in the pull request. `url` is the field which specifies the url to the comment in a pull request thread. `author` is the field which lists the username of the author of the pull request. `created_at` is the field which specifies the time at which the pull request comment was created. `body` is the field which describes the contents of the PRRC. The threads dataset contains the fields `url` and `body` which contain similar information as described above. However, the body field differs: it is a concatenation of all the PRRCs in a pull request thread. The comments dataset contains the fields `comment_id`, `commit_id`, `url`, `author`, `created_at`, and `body`. They are the same fields from the initial dataset. <strong>Construction</strong> We used the fasttext model published by Facebook to detect the language of the PRRC. Only those PRRCs in English were preserved. We also removed any PRRC or thread whose size exceeded 128 Kilobytes.
DOI: 10.5286/isis.e.rb1920344-2
title: Ground state of the layered triangular antiferromagnet YbZnGaO4

description: YbMgGaO4 and YbZnGaO4 are recently discovered triangular antiferromagnets , which contain quasi-2D layers of Yb3+ ions. These ions experience strong spin orbit coupling and have an effective spin of 1/2. YbMgGaO4 has been proposed to be the first candidate system for a quantum spin liquid state with strong spin orbit coupling and experiments indicate that it indeed remains disordered down to 60 mK, while also exhibiting antiferromagnetic correlations. However, recent theoretical calculations suggest that it in fact adapts a stripe-ordered state which mimics a spin-liquid state. YbZnGaO4 is an ideal candidate to test this scenario: it is isostructural to YbMgGaO4 but the substitution of Mg2+ with Zn2+ may reduce the effect of disorder due to the closer match of ionic radii and electronic configuration with the Ga3+ ions. Muons are ideal in probing the properties of this new material.
DOI: 10.5285/723c136b-9cc3-4b3d-bde5-65840031e79b
title: Chlorophyll-a and phaeopigment-a from RRS Discovery Southern Ocean cruise DY098 to the Scotia Sea and South Sandwich Islands, during austral spring 2019

description: This dataset comprises chlorophyll-a and phaeopigment-a concentrations (mg l-1) obtained from seawater samples collected during cruise DY098 on the RRS Discovery during the period 2019-01-02 to 2019-02-10. The cruise was part of the POETS-WCB and SCOOBIES time-series with an additional survey undertaken around the South Sandwich Islands (SSI). The data contained within this dataset were predominantly collected during the SSI component of the cruise. Samples were collected at up to 6 depths across the top 400 m (approx. 5 m, 50 m, 100 m, 200 m, 400 m and the chlorophyll maximum). Samples were collected and filtered on board and analysed at the British Antarctic Survey laboratory. This work was funded through NERC National Capability Science funding (NC-SS) for the Polar Ocean Ecosystem Time Series (POETS) and FCO grant NEB1686.
description: Water samples for chlorophyll analysis were collected on board DY098 with a Sea-Bird Scientific SBE 911 CTD (Sea-Bird Scientific, Bellevue, Washington). Samples were collected from Niskins fired at six depths (400 m, 200 m, 100 m, 50 m, 5 m and the chlorophyll maximum (chl-max)). Duplicate samples of 100 ml water from each depth were taken and water was filtered onto a 25 mm diameter GF/F, wrapped in tinfoil, and stored at -20 °C until later analysis. Upon return to the home laboratory, chlorophyll filters were removed from the freezer, extracted in 10 ml 90 % acetone for 24 hours at -20 °C, and chlorophyll-a and phaeophytin-a concentrations (mg l-1) were measured on a Turner Trilogy Fluorometer (Turner Designs, San Jose, USA) using the acidification module, in order to account for the presence of degradation products.
description: Sea-Bird Scientific SBE 911 CTD (Sea-Bird Scientific, Bellevue, Washington) Turner Trilogy Fluorometer (Turner Designs, San Jose, USA)
description: Two replicate samples were taken at each station. NAs in the data relate to Station 105 where there was no obvious chlorophyll max as the top 100 m was uniform, and Station 116 where the bottle misfired at 50 m. No 400 m sample was taken at Station 5.
DOI: 10.5286/isis.e.rb2070010-2
title: Novel quantum spin liquid state in Ba3ZnRu2O9

description: We have discovered a novel type of quantum spin liquid in Ba3ZnRu2O9, which has a hexagonal lattice of Ru5+ dimers. In the temperature (T) dependence of the magnetic susceptibility (χ) of Ba3ZnRu2O9, any traces of the Curie tail or glassy behavior have not been detected down to 50 mK. We have studied the magnetic behavior of the Nb-doped system Ba3Zn(Ru1-yNby)2O9, where the Nb5+ (4d)0 is non-magnetic ion and disturbs the formation of the Ru5+ dimer. The χ – T curves of the Nb-doped system also shows no trace of the Curie tail at low temperatures, indicating that the local Ru5+-spin induced by the Nb-doping does not act like a free spin. The spin liquid state of Ba3ZnRu2O9 is found to be robust by impurity doping. In order to study the magnetic dynamics at low temperature, we plan ZF-μSR and LF-μSR measurements of three samples Ba3Zn(Ru1-yNby)2O9 (y = 0, 0.06, and 0.12) down to 50 mK.
DOI: 10.5281/zenodo.4773108
title: PLANMAP - Deliverable D2.2 Mercury H-10 Derain quadrangle 5 crater classes

description: Derain quadrangle geologic (morphostratigraphic) map, 5 crater classes
DOI: 10.5281/zenodo.4773107
title: PLANMAP - Deliverable D2.2 Mercury H-10 Derain quadrangle 5 crater classes

description: Derain quadrangle geologic (morphostratigraphic) map, 5 crater classes
DOI: 10.5281/zenodo.4773187
title: Oxypoda opaca SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4773186
title: Oxypoda opaca SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14618352.v1
title: Supplementary Table. 2. NKK-1 borehole planktonic foraminifera species range chart. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 2</b>. NKK1 borehole planktonic foraminifera range chart and biozone assignments. Assemblages were analysed to species level based on examination of the &gt;150 µm and 63-150 µm sieve. Relative abundance categories: abundant (A), common (C), rare (R) and single (S). Note that not all samples were examined. Species in red font are those important for biostratigraphic zonal assignments and the age model. NB. We show the occurrence, in one sample (NKK-1/52, 70–78cm) of the recently described species <i>Globoturborotalita barbula</i> Pearson and Wade 2015 in this range chart. This species was described after our general NKK-1 assemblage work, and thus was not originally recognized, However, since paratypes of this new species are derived from the NKK-1 Javanese material we can now at least record this occurrence. Pearson and Wade (2015) write "<i>Globoturborotalita barbula</i> n. sp. is a common component of the Tanzanian assemblages both before and after the Eocene/Oligocene boundary and we have also confirmed that it is equally common in the Eocene/Oligocene transition of Java (unpublished data)."
DOI: 10.6084/m9.figshare.14618349.v1
title: Supplementary Table. 4. NKK-1 EOT planktonic and benthic planktonic foraminifera oxygen and carbon stable isotope data. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 4</b>. Planktonic and benthic planktonic foraminifera oxygen and carbon stable isotope data from the NKK-1 EOT sequence. The lithology is silty clay and claystone throughout. Data points excluded from the general down-hole isotope interpretation are coloured blue. See text and Supplementary Figs. 2 and 3 for criteria for excluding data.
DOI: 10.6084/m9.figshare.14618334.v1
title: Supplementary Table. 1. Coring summary for the NKK1 borehole. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 1.</b> Coring summary for the NKK1 borehole, Kali Kunir, Nanggulan, Java, Indonesia. GPS: Lat. 07.73844°S; Long. 110.18574°E. mbs, metres below surface.
DOI: 10.6084/m9.figshare.14618331.v1
title: Supplementary Table. 3. NKK-1 borehole planktonic vs. benthic foraminifera counts and taxonomic notes. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 3</b>. NKK1 borehole planktonic versus benthic foraminifera range semiquantitative counts and benthic foraminifera taxonomic notes.
DOI: 10.6084/m9.figshare.14618352
title: Supplementary Table. 2. NKK-1 borehole planktonic foraminifera species range chart. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 2</b>. NKK1 borehole planktonic foraminifera range chart and biozone assignments. Assemblages were analysed to species level based on examination of the &gt;150 µm and 63-150 µm sieve. Relative abundance categories: abundant (A), common (C), rare (R) and single (S). Note that not all samples were examined. Species in red font are those important for biostratigraphic zonal assignments and the age model. NB. We show the occurrence, in one sample (NKK-1/52, 70–78cm) of the recently described species <i>Globoturborotalita barbula</i> Pearson and Wade 2015 in this range chart. This species was described after our general NKK-1 assemblage work, and thus was not originally recognized, However, since paratypes of this new species are derived from the NKK-1 Javanese material we can now at least record this occurrence. Pearson and Wade (2015) write "<i>Globoturborotalita barbula</i> n. sp. is a common component of the Tanzanian assemblages both before and after the Eocene/Oligocene boundary and we have also confirmed that it is equally common in the Eocene/Oligocene transition of Java (unpublished data)."
DOI: 10.6084/m9.figshare.14618349
title: Supplementary Table. 4. NKK-1 EOT planktonic and benthic planktonic foraminifera oxygen and carbon stable isotope data. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 4</b>. Planktonic and benthic planktonic foraminifera oxygen and carbon stable isotope data from the NKK-1 EOT sequence. The lithology is silty clay and claystone throughout. Data points excluded from the general down-hole isotope interpretation are coloured blue. See text and Supplementary Figs. 2 and 3 for criteria for excluding data.
DOI: 10.6084/m9.figshare.14618334
title: Supplementary Table. 1. Coring summary for the NKK1 borehole. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 1.</b> Coring summary for the NKK1 borehole, Kali Kunir, Nanggulan, Java, Indonesia. GPS: Lat. 07.73844°S; Long. 110.18574°E. mbs, metres below surface.
DOI: 10.6084/m9.figshare.14618331
title: Supplementary Table. 3. NKK-1 borehole planktonic vs. benthic foraminifera counts and taxonomic notes. The Eocene–Oligocene Transition in Nanggulan, Java: lithostratigraphy, biostratigraphy and foraminiferal stable isotopes

description: <b>Supplementary Table 3</b>. NKK1 borehole planktonic versus benthic foraminifera range semiquantitative counts and benthic foraminifera taxonomic notes.
DOI: 10.5281/zenodo.3939668
title: IODP Expedition 352, Hole U1440B - Well Logging Data

description: Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, gamma radiation, velocity, density, borehole images,…) in any hole depends on the scientific objectives and operational constraints.
description: IODP Expedition 352: Izu-Bonin-Mariana Forearc
DOI: 10.5281/zenodo.3939667
title: IODP Expedition 352, Hole U1440B - Well Logging Data

description: Logging data are measurements of physical properties of the formation surrounding a borehole, acquired in situ after completion of coring (wireline logging) or during drilling (Logging-While-Drilling, LWD). The range of data (resistivity, gamma radiation, velocity, density, borehole images,…) in any hole depends on the scientific objectives and operational constraints.
description: IODP Expedition 352: Izu-Bonin-Mariana Forearc
DOI: 10.5281/zenodo.4301997
title: Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb?

description: This is a dataset containing fragments of internal transcribed spacer 2 (ITS2) extracted from <em>Bistorta vivipara</em> root-associated fungi, sampled from snow fence experiment in Adventdalen, Svalbard. This dataset was used in Wutkowska et al., 2020, Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb?Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb? [available at biorXiv.org, DOI: 10.1101/2020.06.20.157099] Now the manuscript is available as a peer-reviewed paper: Wutkowska, Magdalena, Dorothee Ehrich, Sunil Mundra, Anna Vader, and Pernille Bronken Eidesen. 2021. ‘Can Root-Associated Fungi Mediate the Impact of Abiotic Conditions on the Growth of a High Arctic Herb?’ <em>Soil Biology and Biochemistry</em> 159:108284. doi: 10.1016/j.soilbio.2021.108284. All other corresponding data are available here: https://github.com/magdawutkowska/bistorta
DOI: 10.5281/zenodo.4301996
title: Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb?

description: This is a dataset containing fragments of internal transcribed spacer 2 (ITS2) extracted from <em>Bistorta vivipara</em> root-associated fungi, sampled from snow fence experiment in Adventdalen, Svalbard. This dataset was used in Wutkowska et al., 2020, Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb?Can root-associated fungi mediate the impact of abiotic conditions on the growth of a High Arctic herb? [available at biorXiv.org, DOI: 10.1101/2020.06.20.157099] Now the manuscript is available as a peer-reviewed paper: Wutkowska, Magdalena, Dorothee Ehrich, Sunil Mundra, Anna Vader, and Pernille Bronken Eidesen. 2021. ‘Can Root-Associated Fungi Mediate the Impact of Abiotic Conditions on the Growth of a High Arctic Herb?’ <em>Soil Biology and Biochemistry</em> 159:108284. doi: 10.1016/j.soilbio.2021.108284. All other corresponding data are available here: https://github.com/magdawutkowska/bistorta
DOI: 10.5281/zenodo.4773249
title: PLANMAP - Deliverable D2.2 Mercury H-10 Derain quadrangle 3 crater classes

description: Derain quadrangle geologic (morphostratigraphic) map, 3 crater classes
DOI: 10.5281/zenodo.4773248
title: PLANMAP - Deliverable D2.2 Mercury H-10 Derain quadrangle 3 crater classes

description: Derain quadrangle geologic (morphostratigraphic) map, 3 crater classes
DOI: 10.5517/ccdc.csd.cc23w82c
title: CCDC 1962612: Experimental Crystal Structure Determination

description: Related Article: Seongwoo Kim, Jooyeon Lee, Sungeun Jeoung, Hoi Ri Moon, Min Kim|2020|Dalton Trans.|49|8060|doi:10.1039/D0DT01324B
DOI: 10.5281/zenodo.4773353
title: GENEA Challenge 2020 submitted BVH files

description: This Zenodo repository contains all BVH files for the evaluation study submitted by the participants of the GENEA Challenge 2020.
DOI: 10.5281/zenodo.4773320
title: Palythoa grandiflora SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4773319
title: Palythoa grandiflora SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4773405
title: Molecular Imaging of Infarcted Heart by Biofunctionalized Gold Nanoshells

description: The unique combination of physical and optical properties of silica (core)/gold (shell) nanoparticles (gold nanoshells) makes them especially suitable for biomedicine. Gold nanoshells are used from high‐resolution in vivo imaging to in vivo photothermal tumor treatment. Furthermore, their large scattering cross‐section in the second biological window (1000–1700 nm) makes them also especially adequate for molecular optical coherence tomography (OCT). In this work, it is demonstrated that, after suitable functionalization, gold nanoshells in combination with clinical OCT systems are capable of imaging damage in the myocardium following an infarct. Since both inflammation and apoptosis are two of the main mechanisms underlying myocardial damage after ischemia, such damage imaging is achieved by endowing gold nanoshells with selective affinity for the inflammatory marker intercellular adhesion molecule 1 (ICAM‐1), and the apoptotic marker phosphatidylserine. The results here presented constitute a first step toward a fast, safe, and accurate diagnosis of damaged tissue within infarcted hearts at the molecular level by means of the highly sensitive OCT interferometric technique.
DOI: 10.5281/zenodo.4634115
title: Molecular Imaging of Infarcted Heart by Biofunctionalized Gold Nanoshells

description: The unique combination of physical and optical properties of silica (core)/gold (shell) nanoparticles (gold nanoshells) makes them especially suitable for biomedicine. Gold nanoshells are used from high‐resolution in vivo imaging to in vivo photothermal tumor treatment. Furthermore, their large scattering cross‐section in the second biological window (1000–1700 nm) makes them also especially adequate for molecular optical coherence tomography (OCT). In this work, it is demonstrated that, after suitable functionalization, gold nanoshells in combination with clinical OCT systems are capable of imaging damage in the myocardium following an infarct. Since both inflammation and apoptosis are two of the main mechanisms underlying myocardial damage after ischemia, such damage imaging is achieved by endowing gold nanoshells with selective affinity for the inflammatory marker intercellular adhesion molecule 1 (ICAM‐1), and the apoptotic marker phosphatidylserine. The results here presented constitute a first step toward a fast, safe, and accurate diagnosis of damaged tissue within infarcted hearts at the molecular level by means of the highly sensitive OCT interferometric technique.
DOI: 10.5281/zenodo.4772745
title: Aratinga jandaya SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4772744
title: Aratinga jandaya SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4749304
title: Supplementary Data: Biases in CloudSat falling snow estimates resulting from daylight-only operations

description: This dataset includes supplementary data used in the analyses described in Milani, L., and N. B. Wood, 2021: Biases in CloudSat falling snow estimates resulting from daylight-only operations. Remote Sensing, doi:10,3390/xxxxx. The dataset is available in either comma-separated variable (CSV) hor Hierarchical Data Format 5 (HDF5) format.
description: Work by NBW on this data set was performed at University of Wisconsin - Madison for the Jet Propulsion Laboratory, California Institute of Technology, sponsored by the National Aeronautics and Space Administration.
DOI: 10.5281/zenodo.4749303
title: Supplementary Data: Biases in CloudSat falling snow estimates resulting from daylight-only operations

description: This dataset includes supplementary data used in the analyses described in Milani, L., and N. B. Wood, 2021: Biases in CloudSat falling snow estimates resulting from daylight-only operations. Remote Sensing, doi:10,3390/xxxxx. The dataset is available in either comma-separated variable (CSV) hor Hierarchical Data Format 5 (HDF5) format.
description: Work by NBW on this data set was performed at University of Wisconsin - Madison for the Jet Propulsion Laboratory, California Institute of Technology, sponsored by the National Aeronautics and Space Administration.
DOI: 10.5281/zenodo.4772905
title: PLANMAP - Deliverable D4.1 - Mercury/H05-Hokusai quadrangle spectral parameters map

description: Preliminary version of spectral parameters maps of H05-Hokusai quadrangle on Mercury at 450 m/pixel derived by MESSENGER/MDIS-WAC dataset available at https://ode.rsl.wustl.edu/mercury/ <br>
description: This work is funded by the European Union's Horizon 2020 research grant agreement No 776276-PLANMAP (https://planmap.eu/) and by the Italian Space Agency (ASI) within the SIMBIO-SYS project (ASI-INAF agreement 2017-47-H.0). This work is based on MESSENGER/MDIS-WAC data publicly available at https://ode.rsl.wustl.edu/mercury/.
DOI: 10.5281/zenodo.4772904
title: PLANMAP - Deliverable D4.1 - Mercury/H05-Hokusai quadrangle spectral parameters map

description: Preliminary version of spectral parameters maps of H05-Hokusai quadrangle on Mercury at 450 m/pixel derived by MESSENGER/MDIS-WAC dataset available at https://ode.rsl.wustl.edu/mercury/ <br>
description: This work is funded by the European Union's Horizon 2020 research grant agreement No 776276-PLANMAP (https://planmap.eu/) and by the Italian Space Agency (ASI) within the SIMBIO-SYS project (ASI-INAF agreement 2017-47-H.0). This work is based on MESSENGER/MDIS-WAC data publicly available at https://ode.rsl.wustl.edu/mercury/.
DOI: 10.17632/2tknbm2b4s.1
title: High-speed trim-cut videos of laser flame cutting

description: This dataset contains videos of the laser flame cutting process obtained at a 30 kfps frame rate in trim-cut configuration. The cutting of 15 mm mild steel is performed at three different speeds. The full description of the experimental details as well as the analysis of the videos together with the hyperspectral measurements can be found in the corresponding article (https://doi.org/10.1016/j.cirp.2021.04.015).
DOI: 10.17632/zct57d4t4s.2
title: COVID-19 research data

description: This dataset provides 1) observations of air pollutants in Chinese cities during the COVID-19 lockdown period; 2) supporting tables of published in One Earth, 2021.
DOI: 10.17632/7whzwp7fnc.1
title: Adolescent_ Fruit and vegetables intake

description: This is a data set of 823 school going adolescents from a sub-urban area of Dhaka, Bangladesh. A before-after designed intervention program was carried out among grade ten students in two randomly selected schools. This dataset showed the baseline data of that study which are related to participants' fruit and vegetables consumption. Several socio-economic and behavioral factors related to adolescents' fruit and vegetables intake have been revealed here.
DOI: 10.17632/9gpw8hws5f.1
title: MSc

description: MSc