cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25919/hqgm-8w50
title: Parkes observations for project P885 semester 2021APRS_11

description: We propose to continue observing the magnetars 1E 1547.0-5408 and PSR J1622-4950 weekly, to track their rotation, flux density, and polarisation. The revolutionary UWL capabilities promise new opportunities to disentangle still mysterious radio emission mechanisms in magnetars. This promise is supported by the recent follow up of XTE J1810-197, again a radio magnetar after 10 years dormant, and of the hot-off-the-press magnetar Swift J1818.0-1607, for which our exciting recent results with UWL motivate an increased monitoring cadence to once weekly.
DOI: 10.6084/m9.figshare.870121
title: Measuring innovation using Fortune 500 rankings (2006-2021)

description: This is a time-series extract from Fortune 500 (2006 to 2021) showing ranking of several companies over that period. Described in a blog post linked below. This is data to show a proxy of innovation measurement from changes in sales (which Fortune 500 measures) over time. <br> <br>This data could be used for Science Policy to indicate where in the economy innovation (in the form of rising sales) is taking place. Now updated for 2016 data. Now updated with 2018 Fortune 500 data (22.5.18). Updated graphic with 2020 Fortune 500 data.<br>Facebook continues to make moves up the F500 in 2021.
DOI: 10.6084/m9.figshare.870121.v12
title: Measuring innovation using Fortune 500 rankings (2006-2021)

description: This is a time-series extract from Fortune 500 (2006 to 2021) showing ranking of several companies over that period. Described in a blog post linked below. This is data to show a proxy of innovation measurement from changes in sales (which Fortune 500 measures) over time. <br> <br>This data could be used for Science Policy to indicate where in the economy innovation (in the form of rising sales) is taking place. Now updated for 2016 data. Now updated with 2018 Fortune 500 data (22.5.18). Updated graphic with 2020 Fortune 500 data.<br>Facebook continues to make moves up the F500 in 2021.
DOI: 10.6084/m9.figshare.870121.v11
title: Measuring innovation using Fortune 500 rankings (2006-2020)

description: This is a time-series extract from Fortune 500 (2006 to 2020) showing ranking of several companies over that period. Described in a blog post linked below. This is data to show a proxy of innovation measurement from changes in sales (which Fortune 500 measures) over time. <br> <br>This data could be used for Science Policy to indicate where in the economy innovation (in the form of rising sales) is taking place. Now updated for 2016 data. Now updated with 2018 Fortune 500 data (22.5.18). Updated graphic with 2020 Fortune 500 data.<br>Facebook continues to make moves up the F500 in 2020.
DOI: 10.21948/1787805
title: NREL Bifacial Experimental Single-Axis Tracking dataset

description: Time-series, PV performance field data from 2019-2020 for the bifacial tracking research field at NREL. Dataset also contains meterological data for site.
DOI: 10.13140/rg.2.2.10972.92808
title: A Hyperbolic Poisson Solver for Tetra and Hexa grids
DOI: 10.6084/m9.figshare.14776658.v1
title: Additional file 6 of High-throughput surface marker screen on primary human breast tissues reveals further cellular heterogeneity

description: Additional file 6.
DOI: 10.6084/m9.figshare.14776640.v1
title: Additional file 1 of High-throughput surface marker screen on primary human breast tissues reveals further cellular heterogeneity

description: Additional file 1: Supplemental Figure S1. Gating strategy of antibody screen. Gating strategy to eliminate debris, doublets, dead and endothelial cells and to select the epithelial and stromal subpopulations. Percentage of positive cells for each antibody was determined based on gates drawn from the isotype control for each of the subpopulations. Gating strategy illustrated represents A) a negative and B) a positive surface marker.
DOI: 10.6084/m9.figshare.14776613.v1
title: Additional file 2 of GUNC: detection of chimerism and contamination in prokaryotic genomes

description: Additional file 2: Table S1. Contig lengths and coverages linked to gene-level taxonomy data underlying the visualization of genome in Fig. 3b.
DOI: 10.25919/j61y-0x55
title: Example data for software note for hybpiper-rbgv and yang-and-smith-rbgv

description: Example data for software note for hybpiper-rbgv and yang-and-smith-rbgv, as discussed in the draft manuscript.
DOI: 10.6084/m9.figshare.14776658
title: Additional file 6 of High-throughput surface marker screen on primary human breast tissues reveals further cellular heterogeneity

description: Additional file 6.
DOI: 10.6084/m9.figshare.14776640
title: Additional file 1 of High-throughput surface marker screen on primary human breast tissues reveals further cellular heterogeneity

description: Additional file 1: Supplemental Figure S1. Gating strategy of antibody screen. Gating strategy to eliminate debris, doublets, dead and endothelial cells and to select the epithelial and stromal subpopulations. Percentage of positive cells for each antibody was determined based on gates drawn from the isotype control for each of the subpopulations. Gating strategy illustrated represents A) a negative and B) a positive surface marker.
DOI: 10.6084/m9.figshare.14776613
title: Additional file 2 of GUNC: detection of chimerism and contamination in prokaryotic genomes

description: Additional file 2: Table S1. Contig lengths and coverages linked to gene-level taxonomy data underlying the visualization of genome in Fig. 3b.
DOI: 10.5281/zenodo.4941442
title: Raw experimental results fot the "inconsistent labels" paper

description: The replication package of inconsistent labels Titile: <strong>An extensive study on inconsistent labels in multi-version-project defect data sets</strong> Our work is to study the existence and influence of inconsistent labels in multi-version-project defect data sets. The “inconsistent label” phenomenon denotes that a module in multiple versions has the same source code (non-blank, non-comment) but the corresponding instances in these versions have different labels. This warehouse stores the raw results of our experiments (RQ2~3). Please refer to the following links for the datasets and experimental codes we used: https://github.com/sticeran/InconsistentLabels.
DOI: 10.5281/zenodo.4642254
title: Raw experimental results fot the "inconsistent labels" paper

description: The replication package of inconsistent labels Titile: <strong>An extensive study on inconsistent labels in multi-version-project defect data sets</strong> Our work is to study the existence and influence of inconsistent labels in multi-version-project defect data sets. The “inconsistent label” phenomenon denotes that a module in multiple versions has the same source code (non-blank, non-comment) but the corresponding instances in these versions have different labels. This warehouse stores the raw results of our experiments (RQ2~3). Please refer to the following links for the datasets and experimental codes we used: https://github.com/sticeran/InconsistentLabels.
DOI: 10.6084/m9.figshare.14776956
title: Supplementary Material for: Extracorporeal Blood Purification in Moderate and Severe COVID-19 Patients: A Prospective Cohort Study

description: <b><i>Introduction:</i></b> Coronavirus disease 2019 (COVID-19) is characterized by hyperinflammation and coagulopathy. Severe cases often develop respiratory distress, requiring mechanical ventilation and with critical cases progressing to acute respiratory distress syndrome. Control of hyperinflammation has been proposed as a possible therapeutic avenue for COVID-19; extracorporeal blood purification (EBP) modalities offer an attractive mean to ameliorate maladaptive inflammation. With this work, we evaluated the longitudinal changes of systemic inflammatory markers in critically ill COVID-19 patients treated with blood purification using AN69ST (oXiris®) haemofilter. <b><i>Methods:</i></b> We performed a time-series analysis of 44 consecutive COVID-19 cases treated with the AN69ST (oXiris®) cytokine adsorbing haemofilter (CAH) according to local practice; we visualize longitudinal results of biochemical, inflammatory, blood gas, and vital sign parameters focussing on systemic levels of interleukin-6 (IL-6), C-reactive protein (CRP), and procalcitonin. <b><i>Results:</i></b> All patients were treated with ≥1 cycle extracorporeal continuous venovenous haemofiltration (CVVH) with CAH; of these, 30 severe patients received CVVH-CAH within 4–12 h of admission after recognizing a hyper-inflammatory state. Another 14 patients admitted with mild-to-moderate symptoms progressed to severe disease and were placed on EBP during hospitalization. The treatment was associated with a reduction of ferritin, CRP, fibrinogen, several inflammatory markers, and a resolution of numerous cytopenias. The observed mortality across the cohort was 36.3%. <b><i>Conclusion:</i></b> EBP with CAH was associated with a decrease in CRP, and control of IL-6 and procalcitonin.
DOI: 10.6084/m9.figshare.14777082
title: Supplementary Material for: Online Tool (Brain Assessment) for the Detection of Cognitive Function Changes during Aging

description: <b><i>Introduction:</i></b> It is well-known that cognitive function declines with age. In order to detect changes in cognitive function, cognitive tests should be performed repeatedly. Currently existing cognitive tests come in only a single version, so the subject is likely to remember the contents with repeated testing. And, under the outbreak of coronavirus disease 2019 (COVID-19), in-person assessment should be avoided. This study was performed to develop a new cognitive test (brain assessment, BA) that has 5 versions and can be performed on a personal computer (PC) through the Internet. <b><i>Materials and Methods:</i></b> Five thousand subjects performed the online BA, which consisted of 5 subtests: number memory, word memory, mental rotation test, N-back test, and judgment test. We standardized the raw scores (cognitive scores, CSs) using mean and standard deviation, which were 50 and 10, respectively. Then, we calculated the mean CS for each sex and age, plotted the relationships between ages and mean CSs on figures, and calculated the formula of cognitive changes during normal aging. <b><i>Results:</i></b> The CSs of all subtests decreased with aging. The regression coefficient was from −0.31 to −0.45. It is noteworthy that in most subtests, the CSs started to increase at 85 years of age. <b><i>Discussion:</i></b> Our BA has 5 versions and can be done on a PC using the Internet. We tested the BA in a large number of subjects, and the standard values of CSs were measured in individuals up to 89 years of age. By performing this test repeatedly, subjects can evaluate the degree of their cognitive decline. If the rate of cognitive decline is greater than that predicted using the normalized formula, the subjects can undertake strategies to improve their control of lifestyle-related diseases or other habits of daily living. <b><i>Conclusion:</i></b> The BA can be easily taken online using a PC, and its scores linearly declined with normal aging. The BA will be useful for detecting longitudinal cognitive changes and comparing them to the pattern seen in normal aging.
DOI: 10.6084/m9.figshare.14777139
title: Supplementary Material for: A Novel Frameshift Variant of the <b><i>MITF</i></b> Gene in a Chinese Family with Waardenburg Syndrome Type 2

description: Waardenburg syndrome (WS) is a rare genetic disorder characterized by varying combinations of sensorineural hearing loss and abnormal pigmentation involving the hair, skin and iris. WS is classified into 4 subtypes (WS1–WS4) based on additional symptoms. WS2 is characterized by the absence of additional symptoms and is mainly attributed to variants in the microphthalmia-associated transcription factor (<i>MITF</i>) gene. We detected a novel frameshift variant c.1025_1032delGGAACAAG (NM_198159) of <i>MITF</i> in 5 patients with WS2 from the same Chinese family by using targeted next-generation sequencing and Sanger sequencing. Phenotypic and genotypic analyses of the family members suggested that this novel variants was pathogenic. Our finding expands the spectrum of <i>MITF</i> variants.
DOI: 10.6084/m9.figshare.14777373
title: Dataset_1_Figshare.xlsx

description: The abundance of microbial functional gene in ageing and rejuvenation metagenomic sequencing data. The abundance was counted separately for each metagenomic data.
DOI: 10.15151/esrf-es-462047063
title: Chemistry and structure of saccharides at high-pressure

description: The study will reveal the high-pressure structures of anhydrous dextorse and sacharose.
DOI: 10.15151/esrf-es-435507675
title: Application of synchrotron X-ray imaging to the study of Ni-base alloy solidification

description: A major issue during turbine blade production is the formation of defects such as stray grains, freckles, and segregated areas that are linked to the development of convective flows during the solidification step. The aim of the proposed experiments is to study the impact of thermo-solutal convection on the dendritic microstructure formation and the subsequent development of strain in the dendritic network during metallic alloy solidification. The originality of the experiments consists in visualizing in situ the directional solidification of Ni-base alloys with a unique high-temperature furnace allowing the concomitant use of synchrotron radiography and diffraction maging.
DOI: 10.15151/esrf-es-435514510
title: Study of plastic strain localization in the bulk of polycrystalline Ni using a combination of X-ray diffraction imaging techniques

description: The proposed research aims at characterizing the process of plastic strain localization and its propagation in the bulk of polycrystalline Ni using a combination of X-ray diffraction imaging techniques. Nickel polycrystal will be studied by DCT and topotomography (both ex situ and in situ). Deformed samples will be transferred to ID06 for higher resolution DFXM measurements (this is a change from last proposal where we intended to use the nanoscope station at ID11). The experimental data will give access to the temporal and spatial evolution of slip bands and enable assessment of the influence of the local grain neighborhood on propagation of plasticity throughout the 3D grain microstructure during early stages of plastic deformation (0-2 %). The collected data will also be used for subsequent 3D simulation work (crystal plasticity and dislocation dynamics) by the project partners.
DOI: 10.15151/esrf-es-412003878
title: Utilizing Bragg Coherent X-ray Diffraction Imaging to Understand the Role of Anisotropy on the Self-Organization of Gas Bubble Superlattices

description: This proposal aims to utilize Bragg coherent diffraction imaging (BCDI) at the ID01 beamline to understand the mechanism for self-organization of gas bubbles into superlattices in selected metals. 3D coherent x-ray diffraction patterns will be used to image Gas Bubble Superlattice (GBS) structures and gain quantitative information on the noble gas bubbles in GBS, such as a change in lattice parameter and strain induced in a variety of metals with a combination of isotropic and anisotropic elastic properties and diffusion mechanisms (interstitial atom versus cluster diffusion). The effect of implantation flux, fluence, and temperature on the formation and structure of GBSs within a Fe, W, and Mo host matrices will be investigated to uncover mechanistic insights into the formation process and reveal how host-guest relationships evolve based on structural transformation.
DOI: 10.15151/esrf-es-390369702
title: Study of the microscopic dynamics during a liquid-liquid transition in a supercooled metallic melt

description: The proposal aims to solve the evolution of the microscopic dynamics of a metallic melt during a liquid-liquid transition. The system to study shows this transition in the deeply super-cooled liquid state at temperatures where the melt has characteristic relaxation times in the order of seconds, which can be resolved by the new capabilities offered by XPCS at ESRF-EBS. The experiment proposed will explore the anomalous dynamics observed at the liquid-liquid transition in macroscopic measurements and, in addition, will test the possibility of resolving the super-cooled liquid dynamics while heating at constant rates, thus bypassing the limitation due to the easy crystallization at this temperature region.
DOI: 10.15151/esrf-es-404439005
title: In situ sulphur poisoning and regeneration of Cu-CHA deNOx catalysts

description: Excellent performance of Cu-exchanged chabazite zeolites (Cu-CHA) as catalysts for NOx removal from exhaust fumes has very recently paved the way for these materials to the catalytic converters of the last-generation diesel cars. However, catalytic activity of these materials decreases after prolonged exposure to sulphur, ever-present in the diesel fuel. This proposal aims to reveal the mechanisms of sulphur poisoning and regeneration of Cu-CHA zeolites at the molecular level, monitoring the electronic structure and local environment of active Cu centres by element-selective X-ray absorption and X-ray emission spectroscopies (XAS and XES) during the in situ adsorption and desorption of sulphur. Obtained results will be crucial to optimise regeneration procedures for the catalysts, increasing thus their efficiency.
DOI: 10.15151/esrf-es-433972376
title: Coherent, bright and focused light to resolve neural circuits
DOI: 10.15151/esrf-es-433978382
title: Investigations of phase transitions and melting/recrystallization dynamics in elemental Selenium under pressure with controlled fast heating

description: In this proposal, we aim to investigate the local structure, phase transitions and melting/recrystallization dynamics of elemental Selenium using x-ray absorption spectroscopy (XAS). The use of our recently developed internally heated diamond anvil cell (DAC) system will allow us to measure XAS spectra and single energy temperature scans with controlled fast heating/cooling rates (100-150 K/s), allow us to investigate the various fundamental open question about the phase behavior in Selenium and similar simple substances. The proposed experiments combine the advantages of the new internally heated DAC and the opportunities offered by the new EBS source for studying the dynamics of phase transition under pressure in moderate high temperature range (below 1300 K) with controlled fast heating and cooling rates.
DOI: 10.15151/esrf-es-433978160
title: Buckling phonons in cuprates: a very high resolution RIXS study

description: The role of phonons in the high Tc superconductivity of cuprates is still hotly debated. Recently, new experimental findings and theoretical arguments have pointed out that buckling phonons may play a major role in the physics of these materials due to the large electron-phonon coupling (EPC). Among other, the buckling mode is expected to vary more among cuprates, as an effect of the different static buckling of the CuO2 planes, being the Cu-O-Cu angle almost 180° in infinite layer compounds and of several degrees off in LSCO and YBCO. Here, we propose to exploit the 25 meV Bandwidth, soon available at ID32 thanks to an ongoing upgrade of the optics, to investigate by Resonant Inelastic X-ray Scattering the buckling modes of 3 cuprate families. For the first time the EPC of the buckling mode will be mapped systematically, in search for a correlation between the EPC, the buckling and the presence of apical oxygen.
DOI: 10.15151/esrf-es-433972570
title: High entropy rock-salt oxides: homogeity, thermal behavior and synthesis

description: Investigation of the compositional existence field of (Cu-Zn-Mg-Co-Ni) high entropy oxides (HEO) by high resolution diffraction: line profile and lower symmetry distortion Temperature stability: distortion evolution and phase segregation. In situ solid state synthesis and kinetics.
DOI: 10.15151/esrf-es-433977821
title: Modulation Enhanced Operando PDF for Battery Materials

description: Modulation excitation enhancement, a method first applied to spectroscopy and then to diffraction data, allows us to remove the signal contributions of inactive spectator species from operando structural data collected during the application of external stimuli. We will perform a proof of concept study on the application of this method to battery materials, using charge and discharge as the external stimuli.
DOI: 10.34688/wn2j-c390
title: Predicting Amyloid Beta
DOI: 10.5281/zenodo.4915455
title: A data set for the investigation of the effects of audio-reinforcement on recollection rates of e-learning users

description: This is a data set for the investigation of the effects of audio-reinforcement on recollection rates of e-learning users. It contains two kinds of data as (i) audio files and (ii) activity log files. Note that the raw data set contains privacy sensitive information, which is concealed in this release. <strong>Audio files</strong> The audio stimuli are recorded from a Japanese mother-tongue speaker. In total, the speaker uttered 504 words and 118 numbers. In each recording session, we displayed a sequence of images, which is either a word or a number on the screen of a notebook PC to the speaker [1]. Together with the sequence of images, a single audio clip is recorded for each image (i.e. text). Note that both the sequence of images and the audio recording are executed through programs implemented in Python. After the recording sessions were finished, the audio clips are post-processed such that the silence segments are cropped and padded. <strong>Activity log files</strong> The activity log files are recorded from the e-learning software Anki [2]. They contain two basic kinds of information as (i) temporal and (ii) identifier. The temporal variables are registered in UNIX time at millisecond resolution and include \(t_p\), \(t_f\), and \(t_e\). Here, \(t_p\) denotes the time of prompt, i.e. the instant when the Q-face of a card appears. In addition, \(t_f\) represents the time of flip, i.e. the instant when the learner presses the ''Show Answer'' button and discloses the A-face of the card. Finally, \(t_e\) stands for the time of evaluation, i.e. the instant when the learner assesses the difficulty of a card by choosing one of ''Again'', ''Good'' or ''Easy''. On the other hand, the identifier variables are integer codes used to determine the deck or card that is being studied (i.e.displayed) at a given time instant (e.g. deck ID, card ID). Note that each log file is associated with a single user. Namely, the software recorded one log file into the account of each user. In addition, each line of the activity log file corresponds to a single action of the user which is considered as a reaction to the software. The structure of each line of data is as follows: [unix time], function name, data in detail (i.e. flags, queue). The data set is used as an input for building the estimator model in our article [3]. <strong>Reference:</strong> [1] P. Supitayakul, Displaying visual stimuli and recording audio, https://github.com/Parisa-S/Displaying-visual-stimuli-and-recording-audio. [2] D. Elmes, “Anki - friendly, intelligent flashcards.” https://ankiweb.net/about, 2021. [3] P. Supitayakul, Z. Yücel, A. Monden, P. Leelaprute, Investigation of the effects of audio-reinforcement on recollection rates of e-learning users (in preparation).