cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.csw3v3
title: Occurrence Download

description: A dataset containing 19663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is Africa",
 "Country is Zambia",
 "Geometry POLYGON((27.79993 -11.97074,26.79313 -12.63677,25.70889 -14.13922,25.554 -14.78977,25.25971 -15.06857,25.18226 -16.24574,25.39911 -16.80335,26.32846 -16.80335,26.71569 -16.69493,27.18036 -16.69493,27.89286 -16.43161,28.31107 -16.29221,28.49694 -16.13732,28.93064 -16.12183,29.16297 -15.92047,28.6983 -15.39384,28.2646 -15.06857,27.76895 -14.78977,27.86188 -14.43352,28.51243 -13.67455,28.51243 -13.00851,28.58987 -12.54384,27.79993 -11.97074))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 19663 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022873-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eplcqw
title: Occurrence Download

description: A dataset containing 713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-73.12363 5.01801,-72.84382 5.03036,-72.84794 5.27,-73.11298 5.26726,-73.12363 5.01801))",
 "HasCoordinate is true",
 "TaxonKey is Chordata",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 713 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007295-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y2w84
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperis hedgei P.H.Davis & Kit Tan"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153046-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83mk54
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Loxostigma mekongense (Franch.) B.L.Burtt"
 ]
}

 The dataset includes 18 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013978-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urmuza
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Meconopsis grandis Prain",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007295-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xh7z6d
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aechmea paniculata Ruiz & Pav."
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022875-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ncuf7
title: Occurrence Download

description: A dataset containing 26422 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana verna L."
 ]
}

 The dataset includes 26422 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007295-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6myr6
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperis dinarica Beck"
 ]
}

 The dataset includes 53 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153054-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6yjwu
title: Occurrence Download

description: A dataset containing 5519688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "Year 1970-2000"
 ]
}

 The dataset includes 5519688 records from 684 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028259-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ge249u
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagocephalus gloveri Abe & Tabeta, 1983",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029737-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wubbp4
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Symphyotrichum graminifolium (Spreng.) G.L.Nesom"
 ]
}

 The dataset includes 97 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029738-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3cryz
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argis lar (Owen, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 425 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029739-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8089547
title: Supplementary information: Subsistence and Population development from the Middle Neolithic B (2800-2350 BCE) to the Late Neolithic (2350-1700 BCE) in Southern Scandinavia

description: This is the supplementary information of the paper “Subsistence and Population development from the Middle Neolithic B (2800-2350 BCE) to the Late Neolithic (2350-1700 BCE) in Southern Scandinavia” (DOI: tba). Please consult the publication for in depth description of the data, its context and for the method applied on the data, as well as references to primary sources. Requirements to be installed to run the scripts: Python 3 (https://www.python.org/) with the packages numpy (https://numpy.org/), pandas (https://pandas.pydata.org/), matplotlib (https://matplotlib.org/), seaborn (https://seaborn.pydata.org/) and scipy (https://scipy.org/); all included in Ancaonda (Python-Distribution, https://www.anaconda.com/). R (https://cran.r-project.org/) with the packages here (https://cran.r-project.org/web/packages/here/index.html) and rcarbon (https://cran.r-project.org/web/packages/rcarbon/index.html), tidyverse, vegan, ggplot2, reshape2, RcppRoll.
DOI: 10.5281/zenodo.8089548
title: Supplementary information: Subsistence and Population development from the Middle Neolithic B (2800-2350 BCE) to the Late Neolithic (2350-1700 BCE) in Southern Scandinavia

description: This is the supplementary information of the paper “Subsistence and Population development from the Middle Neolithic B (2800-2350 BCE) to the Late Neolithic (2350-1700 BCE) in Southern Scandinavia” (DOI: tba). Please consult the publication for in depth description of the data, its context and for the method applied on the data, as well as references to primary sources. Requirements to be installed to run the scripts: Python 3 (https://www.python.org/) with the packages numpy (https://numpy.org/), pandas (https://pandas.pydata.org/), matplotlib (https://matplotlib.org/), seaborn (https://seaborn.pydata.org/) and scipy (https://scipy.org/); all included in Ancaonda (Python-Distribution, https://www.anaconda.com/). R (https://cran.r-project.org/) with the packages here (https://cran.r-project.org/web/packages/here/index.html) and rcarbon (https://cran.r-project.org/web/packages/rcarbon/index.html), tidyverse, vegan, ggplot2, reshape2, RcppRoll.
DOI: 10.15468/dl.2r93wz
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sebastes schlegelii Hilgendorf, 1880",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 387 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029740-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37z4ef
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Begonia longifolia Blume"
 ]
}

 The dataset includes 88 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029741-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gh5vka
title: Occurrence Download

description: A dataset containing 542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthopagrus schlegelii (Bleeker, 1854)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 542 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029742-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2rhes
title: Occurrence Download

description: A dataset listing the 324 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mushroom (KIDR-MR)"
 ]
}

 The dataset's 324 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029736-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55s9cg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus falciformis (Müller & Henle, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029743-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhx65w
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hedysarum polybotrys Hand.-Mazz."
 ]
}

 The dataset includes 314 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029744-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hz53s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharias falciformis Müller & Henle, 1839",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029745-240626123714530/datasets/export for details.
DOI: 10.15468/dl.psm7jr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharhinus falciformis (Müller & Henle ex Bibron), 1839",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029746-240626123714530/datasets/export for details.
DOI: 10.15468/dl.72jkhu
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunnus orientalis (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029747-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3qf2b
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erimacrus isenbeckii (JF Brandt, 1848)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 71 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029748-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bt88bn
title: Occurrence Download

description: A dataset containing 329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemitripterus villosus (Pallas, 1814)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 329 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029749-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unsuhy
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Uroteuthis edulis (Hoyle, 1885)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 177 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029750-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kucset
title: Occurrence Download

description: A dataset containing 43341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sternula albifrons (Pallas, 1764)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43341 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029751-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11365942
title: syncomat: Synthetic Contact Matrices for 200 UN Countries

description: What's Changed



Fixed bugs and general improvements :)

Updated renv for better reproducibility

Improved README for a better user experience

A separate Methodology page is now available for a deeper dive into modifying syncomat for a user's specific needs.
DOI: 10.5281/zenodo.11365943
title: syncomat: Synthetic Contact Matrices for 200 UN Countries

description: Synthetically generated contact matrices for all 200 countries listed in the United Nations’ World Population Prospects (2017) using the conmat package. The analysis pipeline, which uses a targets workflow, is also included. The conmat package is motivated by the contact matrices generated in Prem, Cook, and Jit (2017).

The folder output-contact-matrices contains the synthetic contact matrices. Each csv file is named in the convention {Country}_{Setting}_2015.csv; for example, AUS_work_2015.csv. Country names are in ISO-3 format. The five settings for each country are: home, school, work, other, and all.

We are awaiting testing results for the project pipeline from an independent user (in other words, not the developers) before releasing the next version.

Full Changelog: https://github.com/idem-lab/syncomat/commits/v1.0.0
DOI: 10.5281/zenodo.12776714
title: syncomat: Synthetic Contact Matrices for 200 UN Countries

description: What's Changed



Fixed bugs and general improvements :)

Updated renv for better reproducibility

Improved README for a better user experience

A separate Methodology page is now available for a deeper dive into modifying syncomat for a user's specific needs.
DOI: 10.15468/dl.rz8x27
title: Occurrence Download

description: A dataset containing 1771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phoebastria immutabilis (Rothschild, 1893)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1771 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029752-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxdeef
title: Occurrence Download

description: A dataset containing 1153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Amazona autumnalis (Linnaeus, 1758)",
 "Year 1899-2022"
 ]
}

 The dataset includes 1153 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029754-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3r3gr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diomedea immutabilis Rothschild, 1893",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029755-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26333968
title: Supplementary Material for: Therapeutic host anticancer immune response through photoimmunotherapy for head and neck cancer may overcome resistance to immune checkpoint inhibitors

description: Introduction: Near-infrared photoimmunotherapy (NIR-PIT) is a recently developed hybrid cancer therapy that directly kills cancer cells while producing a therapeutic host anticancer immune response. The activation of host immunity using NIR-PIT can enhance the effects of immune checkpoint inhibitors (ICIs) in animal experimental models; however, there have been no reports of this phenomenon in humans. Furthermore, by activating host immunity using NIR-PIT in patients who have become resistant to ICIs, the effects of ICIs can be restored.
Case Presentation: A 56-year-old male experienced local recurrence after chemoradiotherapy for maxillary sinus cancer (cT4bN0M0). The disease had progressed following ICI antiPD-1 antibody therapy. He underwent NIR-PIT for four cycles; however, a local recurrent tumor remained and began a rapid regrowth. The immune checkpoint inhibitor antiPD-1 antibody was then readministered following NIR-PIT. As a result, sensitivity to antiPD-1 therapy was restored, and the tumor shrank. Finally, a complete response was observed without major adverse events associated with subsequent antiPD-1 antibody treatment following NIR-PIT. Conclusion: These results indicated that NIR-PIT may not only activate host anticancer immunity but also enhance the effects of ICIs and overcome antiPD-1 resistance.
DOI: 10.15468/dl.38fwzq
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthosepion esculentum (Hoyle, 1885)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 271 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029756-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4z2ghp
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepia esculenta Hoyle, 1885",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 267 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029757-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gr9e65
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynoglossus abbreviatus (Gray, 1834)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029758-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qq9fap
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pampus echinogaster (Basilewsky, 1855)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029759-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ykrmu
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pampus argenteus (Euphrasen, 1788)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 376 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029760-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.