cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c50c4sp47
title: MassIVE MSV000089456 - The cluster transfer function of AtNEET supports the ferredoxin-thioredoxin network of plant cells
title: NEET proteins are conserved 2Fe-2S proteins that regulate the levels of iron and reactive oxygen species (ROS) in plant and mammalian cells. Previous studies used constitutive expression of AtNEET, or its dominant-negative variant H89C (impaired in 2Fe-2S cluster transfer), to reveal that disrupting AtNEET function causes oxidative stress, chloroplast iron overload, activation of the iron-deficiency response, and cell death. Because disrupting AtNEET function is deleterious to plants, we developed an inducible expression system to study AtNEET function using a time-course proteomics approach. Here we report that suppression of AtNEET cluster transfer function results in drastic changes in the expression of different members of the ferredoxin (Fd), Fd-thioredoxin (TRX) reductase (FTR), and TRX network of Arabidopsis, as well as in cytosolic cluster assembly proteins. In addition, the expression of Yellow Stripe Like 6 (YSL6), involved in iron export from chloroplasts was elevated. Taken together, our findings reveal new roles for AtNEET in supporting the Fd-TFR-TRX network of plants, iron mobilization from the chloroplast, and cytosolic 2Fe-2S cluster assembly. In addition, we show that AtNEET function is linked to the expression of glutathione peroxidases (GPXs) that play a key role in the regulation of ferroptosis and redox in different organisms.
DOI: 10.48569/pa-l000046
title: NIX Perth

description: This request is to support a repository of de-identified medical/radiological imaging data accumulated during clinical trials involving assessment of patients using imaging studies. Data to be stored will have been collected under the auspices and constraints of institutionally-approved ethics management.Collated data will be made available to collaborators for analysis.
DOI: 10.6084/m9.figshare.16920118
title: A Global Building Occupant Behavior Database

description: Datasets from ASHRAE Global Occupant Behavior Databasehttps://ashraeobdatabase.com/#/<br>
DOI: 10.48569/pa-l000070
title: Australian Basins Well and Seismic Open File Collection

description: CSIRO Energy scientists and collaborators at affiliated institutions will use the open file subsurface data collection to develop new methods to analyse petrophysical well logs, interpret seismic data and perform seismic inversions. The requirement is a data store and workspace for large files (seismic volumes) and petrophysical well log datasets, and interpretation products from this data e.g. classified data, new seismic attribute volumes, geological models, etc.
DOI: 10.5519/qd.jsfv956d
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.19743429
title: Additional file 1 of Faculty appointment and promotion in Taiwan’s medical schools, a systematic analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.19743429.v1
title: Additional file 1 of Faculty appointment and promotion in Taiwan’s medical schools, a systematic analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.19743434
title: Additional file 1 of Propofol total intravenous anaesthesia versus inhalational anaesthesia for acute postoperative pain in patients with morphine patient-controlled analgesia: a large-scale retrospective study with covariate adjustment

description: Additional file 1: Dataset.
DOI: 10.6084/m9.figshare.19743434.v1
title: Additional file 1 of Propofol total intravenous anaesthesia versus inhalational anaesthesia for acute postoperative pain in patients with morphine patient-controlled analgesia: a large-scale retrospective study with covariate adjustment

description: Additional file 1: Dataset.
DOI: 10.6084/m9.figshare.19743437.v1
title: Additional file 1 of Official health communications are failing PFAS-contaminated communities

description: Additional file 1.
DOI: 10.6084/m9.figshare.19743437
title: Additional file 1 of Official health communications are failing PFAS-contaminated communities

description: Additional file 1.
DOI: 10.26180/5ea1736cc3553
title: Macquarie perch Macquaria australasica DArT genotypes for Lutz et al 2021 Evolutionary Applications

description: Data used in the manuscript: <br><br>Lutz, M., Z. Tonkin, J. D. Yen, G. Johnson, B. Ingram, J. Sharley, J. Lyon, D. G. Chapple, P. Sunnucks, and A. Pavlova. 2021. Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish. Evolutionary Applications 14:950-964. <br><br><br>File “Report_DMacq19-4705_8_moreOrders_SNP_mapping_2.csv” is the genotyping file from Diversity Arrays Technology. It contains genotypes for 2672 Macquarie perch individuals, including those not used for this study.<br>File “Metadata.txt” explains content of columns and rows in the genotyping file.<br> File “Lutz_et_al_covariate_file.csv” is the covariate file used for manuscript (1) Lutz et al 2021. It comprises data on population, sex and capture year for each individual. Columns: id- individual identification, pop- population (Dart_F- Dartmouth female; Dart_M- Dartmouth male; Dart_U- Dartmouth individual of unknown sex; Yarr_F- Yarra female; Yarr_M- Yarra male; Yarr_U- Yarra individual of unknown sex; Ovens_2016, Ovens_2017 and Ovens_2018- individuals captured in the Ovens during the 2016, 2017 and 2018 monitoring, respectively; SnobsCreek- hatchery-produced individual born at Snobs Creek hatchery; dontuse- individual was not use in this study); sex- gender (M- male, F- female, U- unknown, #NA- not used in this study).<br><br><br>
DOI: 10.48569/pa-l000008
title: ASKAP Commissioning Data

description: The dataset encompasses all data captured by the Australian SKA Pathfinder (ASKAP) 6-antenna prototype system to date. This is primarily "visibilities" that are used by the ASKAP commissioning team. The data is used by the ASKAP commissioning team (engineers and scientists) to perform testing and validation of the ASKAP telescope. This includes performance testing of the ASKAP Phased Array Feeds (PAF) receiver technology, radio-frequency interference (RFI) survey of the ASKAP/SKA site, and imaging of the radio sky, etc.
DOI: 10.48569/pa-l000007
title: ASKAP CRAFT Data

description: The Commensal Real-time ASKAP Fast Transients (CRAFT) Survey project is the high-time resolution survey for fast radio transients on the Australian SKA Pathfinder (ASKAP). Its aim is to survey the Universe for impulsive astrophysical phenomena at radio frequencies between about 700 and 1500 MHz. A particular target of interest is the newly-discovered class of highly-luminous Fast Radio Bursts or FRB. Through CRAFT, ASKAP will provide the testbed of many of the key technologies and survey modes proposed for high time resolution science with the SKA. The CRAFT project has already detected a few FRBs with ASKAP during its commissioning as recently published in the Astrophysical Journal Letters http://iopscience.iop.org/article/10.3847/2041-8213/aa71ff and also presented in several Australian and international media. This Pawsey storage will aid the CRAFT project in the discovery of more of this FRBs.
DOI: 10.17608/k6.auckland.16816282
title: A Preliminary Study on the Assignment of GitHub Issues to Issue Commenters and the Relationship with Social Smells

description: This dataset is provided as a part of the supplementary material for the paper (entitled: A Preliminary Study on the Assignment of GitHub Issues to Issue Commenters and the Relationship with Social Smells) accepted at the <em>15th International Conference on Cooperative and Human Aspects of Software Engineering</em> (CHASE 2022). The dataset contains two types of files: projects' configuration files (.yml) and social smells files (.csv). The configuration files are provided for replication purpose and can be used in the Kaiaulu tool to replicate its functionality (data download, smell computation). The social smells files contain the computed smells.
DOI: 10.17608/k6.auckland.16816282.v1
title: A Preliminary Study on the Assignment of GitHub Issues to Issue Commenters and the Relationship with Social Smells

description: This dataset is provided as a part of the supplementary material for the paper (entitled: A Preliminary Study on the Assignment of GitHub Issues to Issue Commenters and the Relationship with Social Smells) accepted at the <em>15th International Conference on Cooperative and Human Aspects of Software Engineering</em> (CHASE 2022). The dataset contains two types of files: projects' configuration files (.yml) and social smells files (.csv). The configuration files are provided for replication purpose and can be used in the Kaiaulu tool to replicate its functionality (data download, smell computation). The social smells files contain the computed smells.
DOI: 10.48569/pa-l000040
title: Using Non-Destructive High-Throughput Phenotyping Technology to Understand the Performance of Agriculturally Important Plant Species

description: This is an archive of predominantly image data collected by The Plant Accelerator, the lead node of the APPF. The data are images of various crops in controlled environment experiments and field trials . APPF is funded under NCRIS. Users of the facility are funded by ARC, GRDC, Wine Australia, SAGIT and other funding bodies.
DOI: 10.26180/13193465
title: Robledo-Ruiz et al. 2021 Molecular Ecology Resources (Supporting data)
title: Robledo-Ruiz et al. 2021 Supporting data

description: Supporting data for the manuscript:<br> Robledo-Ruiz, D. A., Pavlova, A., Clarke, R. H., Magrath, M. J. L., Quin, B., Harrisson, K. A., Gan, H. M., Low, G. W., & Sunnucks, P. (2021). <b>A novel framework for evaluating <i>in situ </i>breeding management strategies in endangered populations</b>. <i>Molecular Ecology Resources</i>.<br>Feel free to contact me for a copy of the paper. You can find it here: https://doi.org/10.1111/1755-0998.13476. Preliminary version (open access) here: https://www.researchgate.net/publication/353388070_A_novel_framework_for_evaluating_in-situ_breeding_management_strategies_in_endangered_populations <br><br>Each zipped folder contains the data files and scripts used for the steps in the analysis:<br><br>0_SNPcalling_rawDArTs.zip - SNP calling from raw DArT reads. Final SNP dataset is called "p1r9_ld_50kb_1kb_removed_missing_0.61_no_sexlinked_HW.recode.vcf"<br>1_Sex_check_DArT_files.zip - Check assigned sex using DArT data2_ParentageAnalysis_COLONY.zip - Parentage Analysis using COLONY2 software3_Kinship_Inbreeding_COANCESTRY.zip - Calculation of kinship and inbreeding using COANCESTRY software4_MSI_PMx.zip - Tranformation of kinship to Mate Suitability Index (MSI) using PMx software5_Kinship_ActualPairs.zip - Identification of kinship for actual pairs 5_MSI_ActualPairs.zip - Identification of MSI for actual pairs6_Kinship_BestPairs.zip - Simulation of the kinship of best pairs6_MSI_BestPairs.zip - Simulation of the MSI of best pairs7_Kinship_RandomPairs.zip - Simulation of the kinship of random pairs7_MSI_RandomPairs.zip - Simulation of the MSI of random pairs8_Kinship_IdealPairs.zip - Simulation of the kinship of ideal pairs8_MSI_IdealPairs.zip - Simulation of the MSI of best ideal9_Kinship_Management1Pairs.zip - Simulation of the kinship of management pairs9_MSI_Management1Pairs.zip - Simulation of the MSI of management pairs10_Kinship_FinalComparison.zip - Statistical analysis comparing kinship10_MSI_FinalComparison.zip - Statistical analysis comparing MSI11_PCA.zip - Principal Coordinates Analysis12_Kinship_Management2Pairs.zip - Simulation of the kinship of management 2 pairs12_MSI_Management2Pairs.zip - Simulation of the MSI of management 2 pairs<br><b></b>
DOI: 10.34740/kaggle/dsv/3610765
title: seq2lablecode
DOI: 10.48569/pa-l000060
title: DPaW Imagery

description: The collection contains imagery; mostly satellite imagery from the Landsat series of satellites. This is multispectral imagery available every 16 days for the last 30 years providing a valuable archive to investigate historical trends and impacts on natural resources. Other imagery will include data from other satellites and airborne digital imagery. The data will enable time series research for a number of natural resource research questions across Western Australia. Two examples are rangelands monitoring and historical fire impacts. There are many interests and impacts on the rangelands areas of Western Australia including pastoral leases, conservation estate, mining and feral animals. Time series satellite imagery provides the data to understand the effect of different impacts and management strategies on this huge landscape of over 180 million hectares. Fire is a part of the Western Australian environment. Understanding changed fire regimes and altering these for improved community and biodiversity outcomes requires base information about the location, size and date of fire impacts. Landsat imagery has the required spectral information at a high resolution (25m pixel) and an extensive historical archive to find these fire impacts. Development of automated methods will enable population of the historical fire impacts across the state.
DOI: 10.21227/sjg9-ax29
title: Experimental data of robust stabilization control of an actual combined satellite simulator system

description: The figure is the screenshot of experimental monitoring information during the whole experiment.
DOI: 10.48569/pa-l000032
title: PPMI cohort WGS, WES and RNAseq

description: Parkinson's Progression Markers Initiative (PPMI) is a longitudinal cohort of Parkinson's patients that is funded by Michael J Fox Foundation, The data collection is based on the international effort that involved 35 clinical sites from different countries. Data is primarily stored at the University of Southern California from where the allocated partners can download to local server. Our reserach group is a partner for PPMI andwe have acces sto PPMI geniomics data. In order to analyse the data, we need to use Pawsey supercomputers and to store the data locally. The data volume is 300 TB and it contains whole genome sequences, whole transcriptoimes of 4 different timepoints and whole exome sequences.
DOI: 10.48569/pa-l000044
title: Canning stock route

description: "The project spans seven years and has had many various corporate, federal, state and local government support and funding. These include: BHP Billiton; WA State Government, Department of Culture and the Arts; Lotterywest; Department of Premier and Cabinet, Office for the Arts. A full list of the project's Government and Industry Partners can be found here: http://www.canningstockrouteproject.com/collaborations/government-industry-partners/"
DOI: 10.48569/pa-l000054
title: Breakthrough

description: Breakthrough Listen (BL) is a ten-year initiative to search for technologically-capable life beyond Earth. The BL program searches for anomalous signals in ultra-fine resolution data products, which are produced by custom signal processing systems installed at partnered telescopes. Australian telescopes, including the CSIRO Parkes 64-m telescope, and the Murchison Widefield Array (MWA), form a core component of the BL program. Storing and analysing the ultra-resolution data products from these telescopes is challenging. A majority of data (several petabytes), are currently stored at the University of California Berkeley, and with local storage at the telescope sites. A selection of data from the Parkes telescope (~80 TB) is currently stored under the existing 'Breakthrough' allocation at Pawsey. (http://www.breakthroughinitiatives.org)
DOI: 10.48569/pa-l000011
title: WA Copernicus Data Hub

description: Agreements between Geoscience Australia and various Eurporean Union entities including EUMETSAT, ESA and the Europoean Commission (ref: http://www.ga.gov.au/news-events/news/latest-news/australia-and-the-european-union-enter-historic-arrangement-on-earth-observation) As at 31 Dec 2016, there was already 50Tb WA Copernicus Data stored at NCI. GA have estimated 22TB per quarter for Q1 and Q2 2017 increasing to 25Tb per quarter for Q3 and Q4 2017. Additional Quota may be sought later.
DOI: 10.6084/m9.figshare.19663932
title: Supplementary Material for: Therapy patterns and surveillance measures of Inflammatory Bowel Disease patients beyond disease-related hospitalization: a claims-based cohort study

description: Introduction: Medical care and surveillance of inflammatory bowel disease (IBD) patients has been shown to be far from satisfactory. Data on therapy patterns and surveillance measures in IBD patients are scarce. We, therefore, aimed to compare the therapy patterns and surveillance management of IBD patients in the year before and after IBD-related hospitalization. Methods: We examined medical therapy, surveillance management (influenza vaccination, dermatologist visits, Pap smear screening, creatinine measurements, iron measurements, and ophthalmologist visits) and healthcare utilization in 214 ulcerative colitis (UC) and 259 Crohn’s disease (CD) patients who underwent IBD-related hospitalization from 2012-2014. Results: IBD-related drug classes changed in 64.5% of IBD patients following hospitalization. During the 1-year follow-up period, biological treatment increased in UC and CD patients, while steroid use decreased. Following hospitalization, 63.1% of UC and 27.0% of CD patients received 5-ASA. Only 21.6% of all IBD patients had a flu shot, and 19.6% of immunosuppressed IBD patients were seen by a dermatologist in follow-up; other surveillance measures were more frequent. Surveillance before hospital admission and consultations by gastroenterologists were strongly correlated with surveillance during post-operative follow-up, while gender and diagnosis (UC versus CD) were not. During the 1-year follow-up, 20.5% of all IBD patients had no diagnostic or disease-monitoring procedure. Discussion/Conclusion: Surveillance measures for IBD patients are underused in Switzerland. Further research is needed to examine the impact of annual screenings and surveillance on patient outcomes.
DOI: 10.6084/m9.figshare.19663932.v1
title: Supplementary Material for: Therapy patterns and surveillance measures of Inflammatory Bowel Disease patients beyond disease-related hospitalization: a claims-based cohort study

description: Introduction: Medical care and surveillance of inflammatory bowel disease (IBD) patients has been shown to be far from satisfactory. Data on therapy patterns and surveillance measures in IBD patients are scarce. We, therefore, aimed to compare the therapy patterns and surveillance management of IBD patients in the year before and after IBD-related hospitalization. Methods: We examined medical therapy, surveillance management (influenza vaccination, dermatologist visits, Pap smear screening, creatinine measurements, iron measurements, and ophthalmologist visits) and healthcare utilization in 214 ulcerative colitis (UC) and 259 Crohn’s disease (CD) patients who underwent IBD-related hospitalization from 2012-2014. Results: IBD-related drug classes changed in 64.5% of IBD patients following hospitalization. During the 1-year follow-up period, biological treatment increased in UC and CD patients, while steroid use decreased. Following hospitalization, 63.1% of UC and 27.0% of CD patients received 5-ASA. Only 21.6% of all IBD patients had a flu shot, and 19.6% of immunosuppressed IBD patients were seen by a dermatologist in follow-up; other surveillance measures were more frequent. Surveillance before hospital admission and consultations by gastroenterologists were strongly correlated with surveillance during post-operative follow-up, while gender and diagnosis (UC versus CD) were not. During the 1-year follow-up, 20.5% of all IBD patients had no diagnostic or disease-monitoring procedure. Discussion/Conclusion: Surveillance measures for IBD patients are underused in Switzerland. Further research is needed to examine the impact of annual screenings and surveillance on patient outcomes.
DOI: 10.5281/zenodo.6537689
title: DoTA-seq processed datasets (barcode: read mappings)

description: Processed DoTA-seq sequencing reads to generate barcode: read mapping tables. This data is further processed to generate figures 1-3.
DOI: 10.5281/zenodo.6537688
title: DoTA-seq processed datasets (barcode: read mappings)

description: Processed DoTA-seq sequencing reads to generate barcode: read mapping tables. This data is further processed to generate figures 1-3.
DOI: 10.26186/146570
title: Geoscience Australia Sentinel-2B Observation Attributes Collection 3 - DEA Surface Reflectance OA (Sentinel-2B MSI)

description: Background: This is a sub-product of eoscience Australia Sentinel-2B MSI Analysis Ready Data Collection 3 - DEA Surface Reflectance (Sentinel-2B MSI). See the parent product for more information. The contextual information related to a dataset is just as valuable as the data itself. This information, also known as data provenance or data lineage, includes details such as the data’s origins, derivations, methodology and processes. It allows the data to be replicated and increases the reliability of derivative applications. Data that is well-labelled and rich in spectral, spatial and temporal attribution can allow users to investigate patterns through space and time. Users are able to gain a deeper understanding of the data environment, which could potentially pave the way for future forecasting and early warning systems. The surface reflectance data produced by NBART requires accurate and reliable data provenance. Attribution labels, such as the location of cloud and cloud shadow pixels, can be used to mask out these particular features from the surface reflectance analysis, or used as training data for machine learning algorithms. Additionally, the capacity to automatically exclude or include pre-identified pixels could assist with emerging multi-temporal and machine learning analysis techniques. What this product offers: This product contains a range of pixel-level observation attributes (OA) derived from satellite observation, providing rich data provenance: - null pixels - clear pixels - cloud pixels - cloud shadow pixels - snow pixels - water pixels - spectrally contiguous pixels - terrain shaded pixels It also features the following pixel-level information pertaining to satellite, solar and sensing geometries: - solar zenith - solar azimuth - satellite view - incident angle - exiting angle - azimuthal incident - azimuthal exiting - relative azimuth - timedelta