cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yrp5wk
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gonimbrasia belina Westwood, 1849"
 ]
}

 The dataset includes 348 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245176-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjk6rn
title: Occurrence Download

description: A dataset containing 7325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.84516 -0.65097,-54.74196 -0.65097,-54.74196 13.35696,-89.84516 13.35696,-89.84516 -0.65097))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Accipiter striatus Vieillot, 1808"
 ]
}

 The dataset includes 7325 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228455-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtqqbp
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Artemisia vexans Pamp."
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001486-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnc4w3
title: Occurrence Download

description: A dataset containing 8184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample)",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus humboldtii Bonpl."
 ]
}

 The dataset includes 8184 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0245178-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7s2zqy
title: Occurrence Download

description: A dataset containing 304863 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamium album L."
 ]
}

 The dataset includes 304863 records from 1462 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003216-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58xk9a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arapaima gigas",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056020-250717081556266/datasets/export for details.
DOI: 10.15468/dl.qrc7j6
title: Occurrence Download

description: A dataset containing 615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 615 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056023-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cjfr8
title: Occurrence Download

description: A dataset containing 64606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indigofera",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 64606 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055991-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ut3wc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orconectes limosus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056022-250717081556266/datasets/export for details.
DOI: 10.15468/dl.3ecbk6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056025-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqe5gq
title: Occurrence Download

description: A dataset containing 78000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Acer saccharinum"
 ]
}

 The dataset includes 78000 records from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055900-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e56agz
title: Occurrence Download

description: A dataset containing 5874 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Garrodia nereis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 5874 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056024-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15307021
title: Atlas of Digital Pathology v2 — Part I

description: This is the first part (1/3) of the Atlas of Digital Pathology v2 (ADPv2) dataset, featuring 20k non-overlapping image patches from hematoxylin & eosin (H&E) and hematoxylin phloxine saffron (HPS) stained histological images of healthy colon tissue 

Parts (2/3) and (3/3) can be found here: ADPv2 Part (2/3) , ADPv2 Part (3/3)

Contains zip files 1 through 12, each of which containing 1000 image patches. Annotations and metadatas attached as separate csvs.

All images have a FOV of 544x544 microns, or 1360x1360 pixels (px) at 0.4 mpp (20x).

Tissue classes are as follows: Surface Epithelium (SE), Stratified Squamous (SS), Nonkeratinized Squamous Mucosa (NSM), Keratinized Squamous Epithelium (anal skin) (KSE), Simple Columnar (SCL), Foveolar (stomach) (F), Small Bowel (VESGC), Large Bowel (BBNGC), Glands (GD), Glandular (GL), Small Bowel Cryps (SBC), Large Bowel Crypts (LBC), Mucous Glands (MG), Esophageal Mucous Glands (EMG), Anal Mucous Glands (AMG), Lamina Propria (LP), Lymphoid Aggregates (LA), Lymphovascular Channels (LC), Smooth Muscle Cells (SMC), Elastic Fibers (EF), Neural Tissue (NT), Nerve Fiber (NF), Ganglion Cells (GC), Connective Tissue (CT), Inflammatory Cells (IC), Polymorphonuclear Cells (POC), Neutrophils (NTR), Eosinophils (ES), Mononuclear Cells (MOC), Macrophages (MA), Plasma Cells (PC), Lymphocytes (LY), Red Blood Cells (RBC), Vessels (V), Adipose Tissue (AT), Mesothelial Cells (MC)

The whole slide images (WSIs) used in this project originate from multiple sources, including "The Cancer Genome Atlas (TCGA)" provided by the National Cancer Institute (NCI); Kingston General Hospital (KGH;Canada), St. Michael’s Hospital (SMH; Canada), and Sunnybrook ResearchInstitute (SRI; Canada). Each slide used in our project is derived from healthy colon biopsies. In total, there are 461 slides. See a detailed breakdown below:



200 KGH slides, having 20x magnification, 0.4 mpp, and HPS staining

110 TCGA slides, having 20x magnification, 0.5 mpp, and H&E staining

131 SMH slides, having 50x magnification, 0.2 mpp, and H&E staining

20 SRI slides, having 40x magnification, 0.25 mpp, and H&E staining



When using this resource, please cite our original paper: ADPv2: A Hierarchical Histological Tissue Type-Annotated Dataset for Potential Biomarker Discovery of Colorectal Disease
DOI: 10.5281/zenodo.15307020
title: Atlas of Digital Pathology v2 — Part I

description: This is the first part (1/3) of the Atlas of Digital Pathology v2 (ADPv2) dataset, featuring 20k non-overlapping image patches from hematoxylin & eosin (H&E) and hematoxylin phloxine saffron (HPS) stained histological images of healthy colon tissue 

Parts (2/3) and (3/3) can be found here: ADPv2 Part (2/3) , ADPv2 Part (3/3)

Contains zip files 1 through 12, each of which containing 1000 image patches. Annotations and metadatas attached as separate csvs.

All images have a FOV of 544x544 microns, or 1360x1360 pixels (px) at 0.4 mpp (20x).

Tissue classes are as follows: Surface Epithelium (SE), Stratified Squamous (SS), Nonkeratinized Squamous Mucosa (NSM), Keratinized Squamous Epithelium (anal skin) (KSE), Simple Columnar (SCL), Foveolar (stomach) (F), Small Bowel (VESGC), Large Bowel (BBNGC), Glands (GD), Glandular (GL), Small Bowel Cryps (SBC), Large Bowel Crypts (LBC), Mucous Glands (MG), Esophageal Mucous Glands (EMG), Anal Mucous Glands (AMG), Lamina Propria (LP), Lymphoid Aggregates (LA), Lymphovascular Channels (LC), Smooth Muscle Cells (SMC), Elastic Fibers (EF), Neural Tissue (NT), Nerve Fiber (NF), Ganglion Cells (GC), Connective Tissue (CT), Inflammatory Cells (IC), Polymorphonuclear Cells (POC), Neutrophils (NTR), Eosinophils (ES), Mononuclear Cells (MOC), Macrophages (MA), Plasma Cells (PC), Lymphocytes (LY), Red Blood Cells (RBC), Vessels (V), Adipose Tissue (AT), Mesothelial Cells (MC)

The whole slide images (WSIs) used in this project originate from multiple sources, including "The Cancer Genome Atlas (TCGA)" provided by the National Cancer Institute (NCI); Kingston General Hospital (KGH;Canada), St. Michael’s Hospital (SMH; Canada), and Sunnybrook ResearchInstitute (SRI; Canada). Each slide used in our project is derived from healthy colon biopsies. In total, there are 461 slides. See a detailed breakdown below:



200 KGH slides, having 20x magnification, 0.4 mpp, and HPS staining

110 TCGA slides, having 20x magnification, 0.5 mpp, and H&E staining

131 SMH slides, having 50x magnification, 0.2 mpp, and H&E staining

20 SRI slides, having 40x magnification, 0.25 mpp, and H&E staining



When using this resource, please cite our original paper: ADPv2: A Hierarchical Histological Tissue Type-Annotated Dataset for Potential Biomarker Discovery of Colorectal Disease
DOI: 10.15468/dl.d95qqz
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056026-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh8eqc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056027-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c5vam
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 512 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056029-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vx4r6j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Botswana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056028-250717081556266/datasets/export for details.
DOI: 10.15468/dl.xr2q7w
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leobordea platycarpa",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 605 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056030-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ue8zy4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Garrulax courtoisi)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056031-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6747kc
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Malawi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 91 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056033-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzg6ua
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orconectes limosus",
 "Country is Lithuania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056036-250717081556266/datasets/export for details.
DOI: 10.15468/dl.6rcxkm
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056037-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93ynsn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Nauru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056038-250717081556266/datasets/export for details.
DOI: 10.15468/dl.nnjyty
title: Occurrence Download

description: A dataset containing 1763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus domestica",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1763 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056039-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ecsay
title: Occurrence Download

description: A dataset containing 449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limeum aethiopicum",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 449 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056042-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78cwrz
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Cameroon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 93 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056041-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk8hh6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Cambodia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056040-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59f9fx
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 155 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056045-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jb3wvx
title: Occurrence Download

description: A dataset containing 23022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Quercus macrocarpa"
 ]
}

 The dataset includes 23022 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056044-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v22jxf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056048-250717081556266/datasets/export for details.
DOI: 10.15468/dl.mh2y8s
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Russian Federation",
 "Geometry POLYGON((103.01127 50.31382,110.26095 50.31382,110.26095 55.90151,103.01127 55.90151,103.01127 50.31382))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Papaveraceae"
 ]
}

 The dataset includes 182 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056047-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nth8b3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056049-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc987g
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lotononis falcata",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 189 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056051-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wn4w6d
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus domestica",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056050-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqknyw
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis niloticus",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056053-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16494209
title: grinding data

description: Grinding data and system knowledge base store data
DOI: 10.5281/zenodo.16494210
title: grinding data

description: Grinding data and system knowledge base store data
DOI: 10.15468/dl.d8ubke
title: Occurrence Download

description: A dataset containing 1658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "TaxonKey is Rana arvalis"
 ]
}

 The dataset includes 1658 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056054-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kdvh7m
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave sisalana",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 131 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056055-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.