cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3801343_d4.v1
title: Additional file 4: ExampleData_GxE_1.04_210corr_840noise. of Detection of gene-environment interactions in the presence of linkage disequilibrium and noise by using genetic risk scores with internal weights from elastic net regression

description: Available at https://figshare.com/s/bca99fc248b678adbb07. Contains a data frame called “dat” with 1067 columns and 10,000 rows. The dataset consists of 10,000 subjects and contains six independent genetic risk factors (CFHrs1061170, LOCrs10490924, CFHrs1410996, C2rs9332739, CFBrs641153, CFHrs2230199) and eight non-genetic covariables (age, sex, education, disease status at baseline, smoking, BMI, antioxidant group, zinc group) for the development of an AMD (binary health outcome), which is the main cause for blindness of people older than 50 years of age. PM10: continuous environmental risk factor that has an adverse effect on AMD and further interacts positively with the six risk SNPs. In this dataset, the mean OR for GxE of the 6 risk SNPs is 1.04 (compare Additional file 1, Table S2). 210 SNPs correlated with the 6 risk SNPs, e.g. CFHrs1061170_100 is in high LD with CFHrs1061170 (same variable, but 100 entries are randomized), 840 noise SNPs (CFHrs1061170_rand1 to CFHrs2230199_rand140). (RData 3 mb)
DOI: 10.6084/m9.figshare.c.3801343_d4
title: Additional file 4: ExampleData_GxE_1.04_210corr_840noise. of Detection of gene-environment interactions in the presence of linkage disequilibrium and noise by using genetic risk scores with internal weights from elastic net regression

description: Available at https://figshare.com/s/bca99fc248b678adbb07. Contains a data frame called “dat” with 1067 columns and 10,000 rows. The dataset consists of 10,000 subjects and contains six independent genetic risk factors (CFHrs1061170, LOCrs10490924, CFHrs1410996, C2rs9332739, CFBrs641153, CFHrs2230199) and eight non-genetic covariables (age, sex, education, disease status at baseline, smoking, BMI, antioxidant group, zinc group) for the development of an AMD (binary health outcome), which is the main cause for blindness of people older than 50 years of age. PM10: continuous environmental risk factor that has an adverse effect on AMD and further interacts positively with the six risk SNPs. In this dataset, the mean OR for GxE of the 6 risk SNPs is 1.04 (compare Additional file 1, Table S2). 210 SNPs correlated with the 6 risk SNPs, e.g. CFHrs1061170_100 is in high LD with CFHrs1061170 (same variable, but 100 entries are randomized), 840 noise SNPs (CFHrs1061170_rand1 to CFHrs2230199_rand140). (RData 3 mb)
DOI: 10.6084/m9.figshare.c.3801358_d1.v1
title: MOESM10 of Effectiveness of reactive case detection for malaria elimination in three archetypical transmission settings: a modelling study

description: Additional file 10. Table of elimination outcomes for all simulated scenarios.
DOI: 10.6084/m9.figshare.c.3801370_d2
title: MOESM2 of Efficient conformational sampling and weak scoring in docking programs? Strategy of the wisdom of crowds

description: Additional file 2: Table S1. Table gathering the results of docking and protein and ligand properties. The target name from DUD-E is given in column A. The difficulty of docking and ranking, column B, is colored in green for the 28 easy targets (top-ranked with all programs), in red for the 6 hard targets (with no correct best pose found with any program), in pink for the 9 best but not top-rank targets exposed in Table 5 (a correct best pose found by at least one program but not top-ranked with any scoring function when rescored in one pool). The rest is in gray. The protein properties are given in columns C to G and the ligand properties in columns H to O. Then follow the RMSDs of the top-rank and best poses obtained when docking with Glide (columns P, Q), Surflex (R, S), FlexX (T, U) and Gold (V, W).
DOI: 10.6084/m9.figshare.c.3801355_d6.v1
title: MOESM7 of Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

description: Additional file 6. List of gene markers used on Figs.Â 2 and 3, with their names, IDs, locations on scaffolds and chromosomes, and functional annotations.
DOI: 10.6084/m9.figshare.c.3801355_d6
title: MOESM7 of Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

description: Additional file 6. List of gene markers used on Figs.Â 2 and 3, with their names, IDs, locations on scaffolds and chromosomes, and functional annotations.
DOI: 10.6084/m9.figshare.c.3801385_d2.v1
title: MOESM2 of Investigating the impact of electrical stimulation temporal distribution on cortical network responses

description: Additional file 2. File containing all data used to compute the statistical distributions reported in Figs. 2, 3, 4, and 5 and shown as box plots and bar-graphs.
DOI: 10.6084/m9.figshare.c.3801385_d2
title: MOESM2 of Investigating the impact of electrical stimulation temporal distribution on cortical network responses

description: Additional file 2. File containing all data used to compute the statistical distributions reported in Figs. 2, 3, 4, and 5 and shown as box plots and bar-graphs.
DOI: 10.6084/m9.figshare.c.3801355_d7.v1
title: MOESM6 of Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

description: Additional file 7. Raw data contact frequencies over the entire genome.
DOI: 10.6084/m9.figshare.c.3801493_d1.v1
title: MOESM1 of The characterisation of microsatellite markers reveals tetraploidy in the Greater Water Parsnip, Sium latifolium (Apiaceae)

description: Additional file 1. Genotypes of tested individuals: Complete genotyping data of individuals characterised in marker selection.
DOI: 10.6084/m9.figshare.c.3801493_d1
title: MOESM1 of The characterisation of microsatellite markers reveals tetraploidy in the Greater Water Parsnip, Sium latifolium (Apiaceae)

description: Additional file 1. Genotypes of tested individuals: Complete genotyping data of individuals characterised in marker selection.
DOI: 10.6084/m9.figshare.c.3801508_d1.v1
title: MOESM1 of Tuberculosis caseload in children with severe acute malnutrition related with high hospital based mortality in Lusaka, Zambia

description: Additional file 1. The dataset supporting the conclusions of this article
DOI: 10.6084/m9.figshare.c.3801511_d2.v1
title: Additional file 2: of Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls

description: Technical covariates for 9618 samples in pan-cancer cohort. (XLSX 600Â kb)
DOI: 10.6084/m9.figshare.c.3801508_d1
title: MOESM1 of Tuberculosis caseload in children with severe acute malnutrition related with high hospital based mortality in Lusaka, Zambia

description: Additional file 1. The dataset supporting the conclusions of this article
DOI: 10.6084/m9.figshare.c.3801553_d2.v1
title: MOESM2 of chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

description: Additional file 2. Contains the structures and data used to create and validate the solubility QSPR model in Fig.Â 10.
DOI: 10.15468/dl.vyx2wz
title: Occurrence Download

description: A dataset containing 3020 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Castilleja sessiliflora Pursh"
 ]
}

 The dataset includes 3020 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038769-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3801553_d2
title: MOESM2 of chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

description: Additional file 2. Contains the structures and data used to create and validate the solubility QSPR model in Fig.Â 10.
DOI: 10.15468/dl.whygg2
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clarkia xantiana A.Gray"
 ]
}

 The dataset includes 539 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038770-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3801553_d3.v1
title: MOESM3 of chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

description: Additional file 3. Contains the KNIME workflow shown in Fig.Â 10.
DOI: 10.6084/m9.figshare.c.3801553_d3
title: MOESM3 of chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

description: Additional file 3. Contains the KNIME workflow shown in Fig.Â 10.
DOI: 10.6084/m9.figshare.c.3801544_d2.v1
title: Additional file 2: of Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes

description: R code for the simulation and validation if iTC1390adip. (ZIP 452 kb)
DOI: 10.6084/m9.figshare.c.3801562_d1.v1
title: MOESM1 of Regulators of plant biomass degradation in ascomycetous fungi

description: Additional file 1. Prevalence of transcription factors in Fungi.
DOI: 10.6084/m9.figshare.c.3801538_d4.v1
title: MOESM4 of Outer membrane phospholipase A’s roles in Helicobacter pylori acid adaptation

description: Additional file 4. Residue numbering in E. coli and H. pylori sequences. structures, and models.
DOI: 10.6084/m9.figshare.c.3801553_d4.v1
title: MOESM4 of chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

description: Additional file 4. Contains the PDB identifiers used to create Fig.Â 11.
DOI: 10.6084/m9.figshare.c.3801553_d4
title: MOESM4 of chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery

description: Additional file 4. Contains the PDB identifiers used to create Fig.Â 11.
DOI: 10.6084/m9.figshare.c.3801544_d2
title: Additional file 2: of Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes

description: R code for the simulation and validation if iTC1390adip. (ZIP 452 kb)
DOI: 10.6084/m9.figshare.c.3801562_d1
title: MOESM1 of Regulators of plant biomass degradation in ascomycetous fungi

description: Additional file 1. Prevalence of transcription factors in Fungi.
DOI: 10.6084/m9.figshare.c.3801538_d4
title: MOESM4 of Outer membrane phospholipase A’s roles in Helicobacter pylori acid adaptation

description: Additional file 4. Residue numbering in E. coli and H. pylori sequences. structures, and models.
DOI: 10.6084/m9.figshare.c.3801544_d3.v1
title: Additional file 3: Figure_S1.  of Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes

description: Graph of the effect of each gene’s deletion on both biomass and lipid droplet production compared to the wild type network when glucose and TAG uptake are restricted. Table_S1.docx. Biomass and lipid droplet constituent with stoichiometry as well as growth media definition. Table_S2.xlsx. List of metabolic tasks used to insure proper network behavior under various circumstances. Table_S3.xlsx. List of fluxes for imports and exports in the network at each time point when optimising for lipid droplet production with restrictions to the values of TAG extraction, glucose uptake and NEFA release to the experimental values from obese and lean subjects. Table_S4.xlsx. List of fluxes for imports and exports in the network at each time point when optimising for acetyl-CoA production with restrictions to the values of TAG extraction, glucose uptake and NEFA release to the experimental values from obese and lean subjects. Table_S5.xlsx. Effect of gene deletion in mouse models for the genes predicted to have an effect on adipocyte hypertrophy. Table_S6.docx. Number of genes having an increased effect on lipid droplet and biomass production in either of the adipose tissues compared to the other. Table_S7.xlsx. List of genes identified as potential targets when restricting the flux of reactions using gene fold differences between subcutaneous and visceral adipose tissues. iTC1390adip.xml and iTC1390adipRaven.xml files containing the iTC1390adip network in SDML and raven formats as described above. (ZIP 911 kb)
DOI: 10.6084/m9.figshare.c.3801589_d1.v1
title: MOESM1 of The order of complexity of visuomotor learning

description: Additional file 1. An .xls file containing all the raw data from the study. The file has 12 pagesâ  one for each of the 12 subjects. Each page shows all of its subjectâ  s data: the 30 blocks of 15 targets each, and the long block of 100 targets. For each block, the page shows the w* and b* values for that block, the time of each shot (since the start of the block), the target location for that shot, and the cursor location when the shot was taken.
DOI: 10.6084/m9.figshare.c.3801589_d1
title: MOESM1 of The order of complexity of visuomotor learning

description: Additional file 1. An .xls file containing all the raw data from the study. The file has 12 pagesâ  one for each of the 12 subjects. Each page shows all of its subjectâ  s data: the 30 blocks of 15 targets each, and the long block of 100 targets. For each block, the page shows the w* and b* values for that block, the time of each shot (since the start of the block), the target location for that shot, and the cursor location when the shot was taken.
DOI: 10.6084/m9.figshare.c.3801583_d2.v1
title: Additional file 2: of Neurocognitive function in HIV-infected persons with asymptomatic cryptococcal antigenemia: a comparison of three prospective cohorts

description: Neurocognitive outcomes in three HIV study populations. This file contains the data generated and analyzed in this publication. (CSV 107Â kb)
DOI: 10.6084/m9.figshare.c.3801583_d2
title: Additional file 2: of Neurocognitive function in HIV-infected persons with asymptomatic cryptococcal antigenemia: a comparison of three prospective cohorts

description: Neurocognitive outcomes in three HIV study populations. This file contains the data generated and analyzed in this publication. (CSV 107Â kb)
DOI: 10.6084/m9.figshare.c.3802510_d1.v1
title: Additional file 1: Table S1. of Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries

description: Gene expression level for ovine BMDMs pre- and post-LPS stimulation, quantified against the full Oar v3.1 reference transcriptome using polyA-selected and rRNA-depleted libraries. Table S2. Comparison of polyA+ and ribo-minus TPM distributions with different reference transcriptomes. Table S3. Genes detected in both polyA-selected and rRNA-depleted libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S4. Genes detected only in polyA-selected libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S5. Genes detected only in rRNA-depleted libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S6. Number of pseudoalignments per sample, if quantified against the full Oar v3.1 reference transcriptome. Table S7. Differences in expression between polyA-selected and rRNA-depleted libraries when varying the reference transcriptome. Table S8. Protein-coding genes with the largest absolute difference between polyA+ and ribo-minus TPM. Table S9. GO term enrichment for the set of protein-coding genes with the largest absolute difference between polyA+ and ribo-minus TPM. Table S10. Human gene expression meta-atlas, generated using polyA+ and rRNA-depleted ENCODE RNA-seq data. Table S11. Coding potential of putative novel CDS. (XLSX 32632 kb)
DOI: 10.6084/m9.figshare.c.3802510_d1
title: Additional file 1: Table S1. of Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries

description: Gene expression level for ovine BMDMs pre- and post-LPS stimulation, quantified against the full Oar v3.1 reference transcriptome using polyA-selected and rRNA-depleted libraries. Table S2. Comparison of polyA+ and ribo-minus TPM distributions with different reference transcriptomes. Table S3. Genes detected in both polyA-selected and rRNA-depleted libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S4. Genes detected only in polyA-selected libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S5. Genes detected only in rRNA-depleted libraries, if quantified against the full Oar v3.1 reference transcriptome. Table S6. Number of pseudoalignments per sample, if quantified against the full Oar v3.1 reference transcriptome. Table S7. Differences in expression between polyA-selected and rRNA-depleted libraries when varying the reference transcriptome. Table S8. Protein-coding genes with the largest absolute difference between polyA+ and ribo-minus TPM. Table S9. GO term enrichment for the set of protein-coding genes with the largest absolute difference between polyA+ and ribo-minus TPM. Table S10. Human gene expression meta-atlas, generated using polyA+ and rRNA-depleted ENCODE RNA-seq data. Table S11. Coding potential of putative novel CDS. (XLSX 32632 kb)
DOI: 10.15468/dl.bp4v7t
title: Occurrence Download

description: A dataset containing 2361069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((5.80239 43.25311,5.77863 43.02077,6.28711 42.96168,6.71956 43.19771,7.15677 43.54316,7.43239 43.69797,7.3326 43.96879,6.97143 44.09861,6.577 44.0713,6.40116 43.92431,5.81318 43.46623,5.80239 43.25311))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2014-2024"
 ]
}

 The dataset includes 2361069 records from 804 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038764-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ifx5d2
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.67512044967873 23.246788008565293,-99.31377141327616 23.246788008565293,-99.31377141327616 23.608137044967865,-99.67512044967873 23.608137044967865,-99.67512044967873 23.246788008565293))",
 "HasCoordinate is true",
 "TaxonKey is Orchidaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003403-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111322981
title: Cuneiform Tablet

description: [Text Description:] Cuneiform Tablet, Administrative Tag, with Seal Impressions ❧ [Medium:] Clay ❧ [Script Note:] Cuneiform, Non-Alphabetic ❧ [Physical Object Description:] Clay tablet with cuneiform script, roughly triangular In shape.
DOI: 10.15468/dl.kdes9s
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glechoma sardoa (Bég.) Bég."
 ]
}

 The dataset includes 82 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229583-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t1vubj
title: Occurrence Download

description: A dataset containing 11572 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 11572 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034644-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111306128
title: Monastery of St. John Lampadistis, Ayios Ioannis Lambadhistis Monastery

description: [Text Description:] Complex of 3 churches under one Roof, 11th-18th c. ❧ [Medium:] Stone ❧ [Script Note:] Greek, Non-Text ❧ [Physical Object Description:] Located on east side of stream Setrachos, running along east side of village of Kaopanayiotes. The monastery is a complex of three churches sharing a single pitched roof. Beyond the monastic enclosure is the old schoolhouse, now an icon museum. ❧ [Physical Object Note:] The three churches are: Agios Herakleidios, Ioannis Lampadistis and a Latin Chapel. Agios Herakleidios, built in the 11th c., decorated primarily in 13th c., is a cross-in-square building with four piers supporting a central dome. Ioannis Lamadistis probably built in 1731, on the north side of Herakleidios. No records exist regarding the Latin Chapel. It opens on the north side of the Lampdistis church. A narthex runs along the west side of Herakleidios and Lampadistis. ❧ [Physical Object Note:] In Agios Herakleidios, a few early paintings date to the 12th c. Most of the paintings are 13th c., with a late period series done around 1400. Ioannis Lampadistis contains a reliquary and icon of St. Ioannis (John) Lampadistis. The paintings in the Latin Chapel are Italo-Byzantine; the vaulting is Italianate. The walls north and south are illustrations of the 24 stanzas of the Akathistos Hymn to the Virgin. Some paintings are more Byzantine, others more Italian. ❧
DOI: 10.15468/dl.hseon7
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ochotona collaris (Nelson, 1893)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 214 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003404-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q0qq9w
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal",
 "Country is Andorra",
 "Country is France",
 "Country is Belgium",
 "Country is Switzerland",
 "Country is Italy"
 ]
 },
 "TaxonKey is Plusia festucae (Linnaeus, 1758)"
 ]
}

 The dataset includes 474 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003050-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhbe6y
title: Occurrence Download

description: A dataset containing 1577 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glechoma hirsuta Waldst. & Kit."
 ]
}

 The dataset includes 1577 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229575-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111134860
title: Two Eunuchs from Court VIII, One with Upraised Arm, OI A7366

description: [Text Description:] Two Assyrian eunuchs heading a processing, one on left has hands clasped before him, one on right has right arm raised. ❧ [Text or Publication Number Note:] OI A7366 ❧ [Excavation Description:] Found during Oriental Institute's 1928-1935 excavations at the site of ancient Dur-Sharrukin (Fort Sargon), modern Khorsabad, Iraq ❧ [Medium:] Stone ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Stone bas relief, of limestone. Rectangular. ❧ [Physical Object Note:] 2.497 m W x 3.08 m H ❧ [Physical Object Note:] There is an inscription on the back of the relief; the inscription is not accessible at the present time and was not photographed during the 2011 project.