cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/hd9-jfs-f0l
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lwy-ldl-19p
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2nk-2zr-d50
title: Nummulitidae Blainville, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/57j-gmj-2tj
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4s3-bk4-4qp
title: †Neorotalia burdigalensis (d'Orbigny, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vmy-rp5-q5g
title: Valvulineria mexicana Parker, 1954

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kn8-tak-0e5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pcz-s61-fbn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/btd-jz8-hmd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gcy-9nx-lrg
title: †Cuneolina parva Henson, 1948

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0fc-82q-ffd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c24-7s4-nzx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tc9-f3e-9ph
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/248-3pv-hvf
title: †Dentoglobigerina binaiensis (Koch, 1935)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g3j-l0g-jh1
title: Bacillariophyceae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/49n-4pa-klc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q4a-k75-0fc
title: †Siderolites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yqf-jsf-d88
title: Corylus L.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s9d-03y-xl6
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tdk-448-lfe
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5rc-4ch-tfy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j15-92v-kw7
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sc0-73t-34x
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5519/qd.izlh3xy4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (0 records)
DOI: 10.15468/dl.d9htud
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aphyocharax rathbuni)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 371 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018735-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8tpwg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAC6128"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018736-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxegne
title: Occurrence Download

description: A dataset containing 1371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tringa stagnatilis)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 1371 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018738-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9byb7
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tringa stagnatilis)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018740-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r4sax
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia sissoo",
 "Country is Burkina Faso",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018741-250802193616735/datasets/export for details.
DOI: 10.15468/dl.n6hzeg
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia sissoo",
 "Country is Cameroon",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018742-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16751267
title: Forecasting sub-pixel vegetation potential shifts to guide restoration planning for the African Great Green Wall
DOI: 10.5281/zenodo.16751268
title: Forecasting sub-pixel vegetation potential shifts to guide restoration planning for the African Great Green Wall
DOI: 10.15468/dl.byhnr8
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paguma larvata",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 101 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018744-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15007208
title: A cross-species single-cell kidney atlas: Data repository

description: Data repository linked to our manuscript "Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas" (Klötzer et al., Nature Genetics 2025) including our 5 annotated snRNA-seq atlases in anndata format: 

1.) SISKA.h5ad: Our cross-species atlas using one-to-one orthologous genes between human, mouse, and rat

2.) Human.h5ad: Human-only atlas (SISKA annotation)

3.) Mouse.h5ad: Mouse-only atlas (SISKA annotation)

4.) Rat.h5ad: Rat-only atlas (SISKA annotation)

5.) Human_extended.h5ad: Human extended disease-centered atlas

6.) raw_feature_bc_matrix.h5 files of unpublished human biopsy samples

Please also see the separate metadata.csv files for sample information. 

For details, check our manuscript or SISKA GitHub repository:

https://github.com/susztaklab/SISKA/

Please cite our manuscript!

"Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas" (Klötzer et al., Nature Genetics 2025, DOI: 10.1038/s41588-025-02285-0)"

https://www.nature.com/articles/s41588-025-02285-0
DOI: 10.5281/zenodo.15007207
title: A cross-species single-cell kidney atlas: Data repository

description: Data repository linked to our manuscript "Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas" (Klötzer et al., Nature Genetics 2025) including our 5 annotated snRNA-seq atlases in anndata format: 

1.) SISKA.h5ad: Our cross-species atlas using one-to-one orthologous genes between human, mouse, and rat

2.) Human.h5ad: Human-only atlas (SISKA annotation)

3.) Mouse.h5ad: Mouse-only atlas (SISKA annotation)

4.) Rat.h5ad: Rat-only atlas (SISKA annotation)

5.) Human_extended.h5ad: Human extended disease-centered atlas

6.) raw_feature_bc_matrix.h5 files of unpublished human biopsy samples

Please also see the separate metadata.csv files for sample information. 

For details, check our manuscript or SISKA GitHub repository:

https://github.com/susztaklab/SISKA/

Please cite our manuscript!

"Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas" (Klötzer et al., Nature Genetics 2025, DOI: 10.1038/s41588-025-02285-0)"

https://www.nature.com/articles/s41588-025-02285-0
DOI: 10.15468/dl.d3dchg
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gnathophis heterognathus"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018745-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3spgc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xenocypris hupeinensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018746-250802193616735/datasets/export for details.
DOI: 10.5281/zenodo.16750908
title: POSNNET evaluation dataset

description: This dataset is provided to support the reproducibility of the results presented in the publication "POSNNET: POSitioning Neural Network Estimation Tool" by Guyard et al.

The code used for the framework evaluation is available on GitHub (please refer to the notebook "Framework validation.ipynb"): https://github.com/Kevin-Guyard/posnnet
DOI: 10.5281/zenodo.16750909
title: POSNNET evaluation dataset

description: This dataset is provided to support the reproducibility of the results presented in the publication "POSNNET: POSitioning Neural Network Estimation Tool" by Guyard et al.

The code used for the framework evaluation is available on GitHub (please refer to the notebook "Framework validation.ipynb"): https://github.com/Kevin-Guyard/posnnet
DOI: 10.15468/dl.bvtshe
title: Occurrence Download

description: A dataset containing 326934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Patagioenas cayennensis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 326934 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018718-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.90z0bwtq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8019 records)
DOI: 10.15468/dl.zt4w8b
title: Occurrence Download

description: A dataset containing 35667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tringa stagnatilis)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 35667 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018748-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zkdta
title: Occurrence Download

description: A dataset containing 42902 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Tringa stagnatilis)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 42902 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018747-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pf84z9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia sissoo",
 "Country is Dominican Republic",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018750-250802193616735/datasets/export for details.
DOI: 10.15468/dl.ubcsky
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dalbergia sissoo",
 "Country is Chad",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018749-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwzra3
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viverra zibetha",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018751-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvbc42
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrophis heterognathos"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018752-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4dq6h
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medicago ruthenica"
 ]
}

 The dataset includes 113 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018754-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbrm95
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hoplomyzon atrizona)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018753-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29834987
title: Supplementary Material for: Cognitive Benefits of Ginseng: A Systematic Review and Meta-Analysis of Changes in MMSE and ADAS-cog Scores

description: Background: Despite the potential cognitive benefits of ginseng, evidence of its effects on cognitive function remains limited. We aimed to evaluate the association between ginseng and cognitive function through a systematic review and meta-analysis of recent randomized controlled trials (RCT).

Methods: We searched six databases: PubMed, Embase, Cochrane Library, Korean Studies
Information Service System (KISS), Research Information Sharing Service (RISS), and ScienceON, for RCTs investigating the effects of ginseng on cognitive function up to April 26, 2024. Two independent researchers assessed the methodological quality and risk of bias of the extracted studies. Data were presented as the mean difference (MD) with 95% confidence interval (CI), and a subgroup analysis was performed based on ginseng dosage

Results: Eight studies were included in this meta-analysis. The results suggested that ginseng may have a potential effect on cognitive improvement. Ginseng consumption showed a significant effect on increasing Mini-mental state examination (MMSE) scores (MD = 0.68; 95% CI: 0.03, 1.32; p = 0.04; I² = 66%). For Alzheimer’s disease assessment scale-cognitive subscale (ADAS-cog), a significant reduction in scores was observed in both the total (MD = -1.10; 95% CI: -1.82, -0.38; p = 0.003; I² = 0%) and low-dose groups (MD = -1.09; 95% CI: -1.96, -0.22; p = 0.01; I² = 0%).
Conclusion: Ginseng consumption was found to be beneficial for changes in certain cognitive function-related indicators. However, further research is required to determine the long-term effects of ginseng based on dosage.
DOI: 10.6084/m9.figshare.29834987.v1
title: Supplementary Material for: Cognitive Benefits of Ginseng: A Systematic Review and Meta-Analysis of Changes in MMSE and ADAS-cog Scores

description: Background: Despite the potential cognitive benefits of ginseng, evidence of its effects on cognitive function remains limited. We aimed to evaluate the association between ginseng and cognitive function through a systematic review and meta-analysis of recent randomized controlled trials (RCT).

Methods: We searched six databases: PubMed, Embase, Cochrane Library, Korean Studies
Information Service System (KISS), Research Information Sharing Service (RISS), and ScienceON, for RCTs investigating the effects of ginseng on cognitive function up to April 26, 2024. Two independent researchers assessed the methodological quality and risk of bias of the extracted studies. Data were presented as the mean difference (MD) with 95% confidence interval (CI), and a subgroup analysis was performed based on ginseng dosage

Results: Eight studies were included in this meta-analysis. The results suggested that ginseng may have a potential effect on cognitive improvement. Ginseng consumption showed a significant effect on increasing Mini-mental state examination (MMSE) scores (MD = 0.68; 95% CI: 0.03, 1.32; p = 0.04; I² = 66%). For Alzheimer’s disease assessment scale-cognitive subscale (ADAS-cog), a significant reduction in scores was observed in both the total (MD = -1.10; 95% CI: -1.82, -0.38; p = 0.003; I² = 0%) and low-dose groups (MD = -1.09; 95% CI: -1.96, -0.22; p = 0.01; I² = 0%).
Conclusion: Ginseng consumption was found to be beneficial for changes in certain cognitive function-related indicators. However, further research is required to determine the long-term effects of ginseng based on dosage.