cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.l2khrw
title: Occurrence Download

description: A dataset containing 2720 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Androsace cylindrica subsp. willkommii P.Monts.",
 "TaxonKey is Lysimachia minoricensis J.J.Rodr.",
 "TaxonKey is Androsace cantabrica (Losa & P.Monts.) Kress",
 "TaxonKey is Androsace vitaliana subsp. aurelii Luceño",
 "TaxonKey is Narcissus bugei (Fern.Casas) Fern.Casas",
 "TaxonKey is Sideroxylon canariense Leyens, Lobin & A.Santos",
 "TaxonKey is Rumex scutatus subsp. gallaecicus Lago",
 "TaxonKey is Rumex rupestris Le Gall",
 "TaxonKey is Polygala balansae Coss.",
 "TaxonKey is Echium onosmifolium subsp. spectabile G.Kunkel",
 "TaxonKey is Echium handiense Svent.",
 "TaxonKey is Echium decaisnei subsp. purpuriense Bramwell",
 "TaxonKey is Echium callithyrsum Webb ex Bolle",
 "TaxonKey is Gyrocaryum oppositifolium Valdés",
 "TaxonKey is Omphalodes brassicifolia (Lag.) Sweet",
 "TaxonKey is Ogastemma pusillum (Coss. & Durieu ex Bonnet & Barratte) Brummitt",
 "TaxonKey is Buglossoides gastonii (Benth.) I.M.Johnst.",
 "TaxonKey is Echium acanthocarpum Svent.",
 "TaxonKey is Elizaldia calycina subsp. multicolor (Kunze) Chater",
 "TaxonKey is Echium wildpretii subsp. trichosiphon (Svent.) Bramwell",
 "TaxonKey is Echium valentinum Lag.",
 "TaxonKey is Echium triste subsp. nivariense (Svent.) Bramwell",
 "TaxonKey is Echium sventenii Bramwell",
 "TaxonKey is Solenanthus reverchonii Degen",
 "TaxonKey is Limonium vigoi L.Sáez, Curcó & Rosselló",
 "TaxonKey is Limonium preauxii (Webb & Berthel.) Kuntze",
 "TaxonKey is Limonium vigaroense Marrero Rodr. & R.S.Almeida",
 "TaxonKey is Limonium viciosoi (Pau) Erben",
 "TaxonKey is Limonium cordovillense Stübing & Cirujano",
 "TaxonKey is Limonium ugijarense Erben",
 "TaxonKey is Limonium inexpectans L.Sáez & Rosselló",
 "TaxonKey is Limonium pinillense R.Roselló & Peris",
 "TaxonKey is Limonium tuberculatum (Boiss.) Kuntze",
 "TaxonKey is Limonium perplexum L.Sáez & Rosselló",
 "TaxonKey is Limonium papillatum (Webb & Berthel.) Kuntze",
 "TaxonKey is Limonium catalaunicum (Willk. & Costa) Pignatti",
 "TaxonKey is Limonium grosii L.Llorens",
 "TaxonKey is Limonium carvalhoi Rosselló & L.Sáez",
 "TaxonKey is Limonium carthaginense (Rouy) C.E.Hubb. & Sandwith",
 "TaxonKey is Limonium sventenii A.Santos & M.Fernández"
 ]
 }
 ]
}

 The dataset includes 2720 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007194-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3csytx
title: Occurrence Download

description: A dataset containing 2519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Betula utilis D.Don"
 ]
}

 The dataset includes 2519 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010090-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5cbrf
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nicotiana tabacum L."
 ]
}

 The dataset includes 57 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018908-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1b2m7e
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus brasiliensis L."
 ]
}

 The dataset includes 135 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007195-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whre62
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pappophorum Schreb."
 ]
}

 The dataset includes 532 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014799-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc5q2u
title: Occurrence Download

description: A dataset containing 8740 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Handroanthus Mattos"
 ]
}

 The dataset includes 8740 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007195-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyhwv7
title: Occurrence Download

description: A dataset containing 14612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((69.37031999999999 48.58410666666667, 69.37031999999999 65.67073733333334, 35.32496433333334 65.67073733333334, 35.32496433333334 48.58410666666667, 69.37031999999999 48.58410666666667))",
 "EventDate is 2019-01-01,2019-01-31"
 ]
}

 The dataset includes 14612 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018883-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dvh6d
title: Occurrence Download

description: A dataset containing 1292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.11304 6.08643,-75.64087 5.22949,-71.94946 6.08643,-73.15796 11.16211,-73.6853 11.31592,-73.99292 11.55762,-75.22339 11.16211,-75.77271 10.72266,-75.95398 9.62402,-77.24487 8.52539,-77.11304 6.08643))",
 "TaxonKey is Crescentia cujete L."
 ]
}

 The dataset includes 1292 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022844-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iznar9
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dicranodontium didymodon (Griff.) Paris"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007195-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yg6xpa
title: Occurrence Download

description: A dataset listing the 36 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Harvestmen of French Guiana"
 ]
}

 The dataset's 36 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036073-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znxc85
title: Occurrence Download

description: A dataset containing 229533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((79.48667 54.97916,119.37246 54.97916,119.37246 72.64101,79.48667 72.64101,79.48667 54.97916))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 229533 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070966-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0kmbmq
title: Occurrence Download

description: A dataset containing 2233527 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiroptera"
 ]
}

 The dataset includes 2233527 records from 571 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007195-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vz3452
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Indonesia, Malaysia, Brunei Darussalam, Singapore)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Troides amphrysus (Cramer, 1779)"
 ]
}

 The dataset includes 392 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010134-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbddmm
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Indonesia, Malaysia, Singapore)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Clarias leiacanthus Bleeker, 1851"
 ]
}

 The dataset includes 51 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010135-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnknjs
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Malaysia, Indonesia, Brunei Darussalam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pelobatrachus nasutus (Schlegel, 1858)"
 ]
}

 The dataset includes 285 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010136-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq4tbm
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Malaysia, Indonesia, Singapore, Brunei Darussalam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhinoplax vigil (Pennant, 1781)"
 ]
}

 The dataset includes 43 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010137-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6duy8
title: Occurrence Download

description: A dataset containing 1208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Indonesia, Malaysia, Brunei Darussalam, Singapore)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alcedo euryzona Temminck, 1830"
 ]
}

 The dataset includes 1208 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010138-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yv4fku
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equus zebra hartmannae Matschie, 1898"
 ]
}

 The dataset includes 447 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010139-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpnkzf
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Malaysia, Singapore, Indonesia, Brunei Darussalam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lepidotrigona terminata (Smith, 1878)"
 ]
}

 The dataset includes 67 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010140-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2evx7
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Singapore, Indonesia, Malaysia, Brunei Darussalam)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cuora amboinensis (Daudin, 1801)"
 ]
}

 The dataset includes 63 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010141-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkn98u
title: Occurrence Download

description: A dataset containing 77122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucalyptus camaldulensis Denham)"
 ]
}

 The dataset includes 77122 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010133-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bkmnt6
title: Occurrence Download

description: A dataset containing 5402 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucalyptus cladocalyx F.Muell.)"
 ]
}

 The dataset includes 5402 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010142-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu2vnh
title: Occurrence Download

description: A dataset containing 593 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucalyptus conferruminata D.J.Carr & S.G.M.Carr)"
 ]
}

 The dataset includes 593 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010143-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytvyes
title: Occurrence Download

description: A dataset containing 814 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equus zebra zebra"
 ]
}

 The dataset includes 814 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010144-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r4jkax
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Dendrobium nobile Lindl."
 ]
}

 The dataset includes 137 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010145-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pytxeh
title: Occurrence Download

description: A dataset containing 10141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucalyptus delegatensis F.Muell. ex R.T.Baker)"
 ]
}

 The dataset includes 10141 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010146-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stv4yn
title: Occurrence Download

description: A dataset containing 625 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucalyptus diversicolor F.Muell.)"
 ]
}

 The dataset includes 625 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010147-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11143923
title: Dʺ Structures beneath the East China Sea resolved by P-wave slowness
DOI: 10.5281/zenodo.11143924
title: Dʺ Structures beneath the East China Sea resolved by P-wave slowness
DOI: 10.15468/dl.hp3srt
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Dendrobium nobile Lindl."
 ]
}

 The dataset includes 137 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010149-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qe8ggq
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crocidura lepidura Lyon, 1908"
 ]
}

 The dataset includes 30 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010150-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kutstw
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Indonesia, Malaysia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pteropus vampyrus (Linnaeus, 1758)"
 ]
}

 The dataset includes 230 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010151-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7t2t4a
title: Occurrence Download

description: A dataset containing 3647 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apuleia leiocarpa (Vogel) J.F.Macbr."
 ]
}

 The dataset includes 3647 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010152-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q99ua3
title: Occurrence Download

description: A dataset containing 954 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Equus grevyi Oustalet, 1882"
 ]
}

 The dataset includes 954 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010153-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kq2v8w
title: Occurrence Download

description: A dataset containing 410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amandava amandava (Linnaeus, 1758)"
 ]
}

 The dataset includes 410 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010154-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgjcew
title: Occurrence Download

description: A dataset containing 149852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucalyptus globulus Labill.)"
 ]
}

 The dataset includes 149852 records from 498 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010148-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11108303
title: Rewired connectome of an SSCX model with inhibitory targeting based on trends found in MICrONS data

description: This is a rewired connectome of the internal synaptic connectivity of the model deposited under https://zenodo.org/records/7930275.

In the original model, local connectivity is based on axo-dendritic overlaps combined with a pruning rule, which together are known to be able to recreate biological trends in excitatory subnetworks. By comparison with the MICrONS dataset we found that the inhibitory trends characterized by Schneider-Mizell et al. (2023) can be reproduced with some additional, relatively simple pruning rules (see accompanying anatomy publication), and created a rewired version of the connectome in SONATA format (edges.h5) that reproduces these trends. We refer to this as the Schneider-Mizell compatible SM-connectome in the accompanying physiology publication.

Note that for technical reasons, all afferent_segment_... and efferent_... synapse properties (which are not required for running simulations) were set to zero in the rewired pathways.

[Update 08/05/2024 - v3]: Conductances of individual synapses were recalibrated to preserve pathway-specific reference PSP amplitudes. The afferent_section_type and efferent_section_type synapse properties were previously off by 1 and were fixed. Missing synaptic input compensation was recalibrated to obtain target firing rates and added to this release.

[Update 28/02/2024 - v2]: Source m-type L1_NGC-SA included
description: Uncompress edges.h5: tar -xf edges.xz

Replace original edges.h5 by extracted file


For running simulations:



Follow simulation instructions from our full model release

Use exemplary simulation configurations for different spontaneous states with recalibrated input compensation that are included in this release (spontaneous_activity_simulation.zip)
description: Numbers of connections and synapses in the rewired vs. the original connectome



Overall:





 
Original
Rewired
Difference
Difference (%)


Number of connections
87,457,567
115,160,718
27,703,151
31.68%


Number of synapses
407,127,134
406,836,913
-290,221
-0.07%




 



Rewired pathways only:





 
Original
Rewired
Difference
Difference (%)


Number of connections
3,840,617
31,543,768
27,703,151
721.32%


Number of synapses
56,669,829
56,379,608
-290,221
-0.51%




Rewired pathways: 26 (inhibitory) source m-types to all (excitatory/inhibitory) target m-types

Additional details can be found in the supplementary document Zenodo___Rewired_SSCX_with_inhibitory_trends_from_MICrONS__v3.pdf.