cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48539/hbm439.ztgh.778
title: 3D Reference Organ for Lymph Node, Female, Right, v1.0

description: This reference organ, Right-lymph-node-female (https://humanatlas.io/3d-reference-library) was created using the<br>Clearing-enhanced 3D (Ce3D) method developed by Dr. Weizhe Li, Laboratory of Immune System Biology, National Institute<br>of Allergy and Infectious Diseases, NIH using data documented in (Li, Germain, and Gerner 2017). While the size and<br>cellular composition of mouse and human lymph nodes varies between species, the overall anatomy is well-conserved.<br><br>**Bibliography:**<br><br>* Li, Weizhe, Ronald N. Germain, and Michael Y. Gerner. 2017. “Multiplex, Quantitative Cellular Analysis in Large Tissue Volumes with Clearing-Enhanced 3D Microscopy (Ce3D).” *Proceedings of the National Academy of Sciences* 114 (35): E7321–30. https://doi.org/10.1073/pnas.1708981114.
DOI: 10.5281/zenodo.17084240
title: Data for "Nonequilibrium dynamics in a quantum spin chain with pump-probe resonant inelastic x-ray scattering"

description: Data for "Nonequilibrium dynamics in a quantum spin chain with pump-probe resonant inelastic x-ray scattering"

 

This archive contains the numerical data underlying the figures in the paper.

A Python reader is provided to ensure full accessibility to the .mat files without MATLAB.
DOI: 10.5281/zenodo.17084241
title: Data for "Nonequilibrium dynamics in a quantum spin chain with pump-probe resonant inelastic x-ray scattering"

description: Data for "Nonequilibrium dynamics in a quantum spin chain with pump-probe resonant inelastic x-ray scattering"

 

This archive contains the numerical data underlying the figures in the paper.

A Python reader is provided to ensure full accessibility to the .mat files without MATLAB.
DOI: 10.15468/dl.3s3mqq
title: Occurrence Download

description: A dataset containing 39118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melilotus indicus"
 ]
}

 The dataset includes 39118 records from 772 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053557-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm775.pmbv.843
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Heart, v1.4

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.15468/dl.vw3ugu
title: Occurrence Download

description: A dataset containing 6452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dracophyllum longifolium"
 ]
}

 The dataset includes 6452 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053559-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm287.kvcd.758
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Intestine, Large, v1.0

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.48539/hbm567.zvxx.458
title: OMAP-21: Organ Mapping Antibody Panel (OMAP) for Multiplexed Antibody-Based Imaging of Palatine Tonsil (FFPE) with MICS on MACSima, v1.0

description: OMAP-21 was designed for MICS (MACSima imaging cyclic staining) imaging of FFPE human tonsil samples. Tissue fixation<br>and antigen retrieval is described in (Spatial protein and RNA analysis on the same tissue section using MICS<br>technology). The MACSima technology is described in detail in the following publication (MACSima imaging cyclic<br>staining (MICS) technology reveals combinatorial target pairs for CAR T cell treatment of solid tumors). Most, but not<br>all, antibodies in this panel are recombinant antibodies with a mutated human IgG1 constant region. The described<br>mutation removes the Fc receptor binding capacity of human IgG1, eliminating the need for additional blocking steps<br>and reducing non-specific binding of human antibodies on human tissues. Highly multiplexed imaging is achieved through<br>cycles of immunolabeling with FITC, PE, and APC conjugated antibodies and photobleaching to eliminate fluorescence<br>signal between imaging cycles. The panel contains 47 antibodies and the nuclear marker DAPI for image alignment and<br>nuclear segmentation. This OMAP provides a spatial context for all anatomical structures and most cell types present<br>in the human palatine tonsil. OMAP-21 follows closely OMAP-1 described for human lymph nodes<br>(omap-1-human-lymph-node-ibex) and OMAP-10 (omap-10-palatine-tonsil-macsima). All reagents were obtained from<br>Miltenyi Biotec and have been rigorously tested through an internal quality control system to have minimal variation<br>between lots. For this reason, lot information is not included in this table. Analysis was performed by an accompanied<br>software package MACSIQ View Analysis also described in the MACSima publication<br>(https://doi.org/10.1038/s41598-022-05841-4). The result of the analysis is included in the uploaded dataset. In<br>brief, the software processes the raw images of the MACSima run, generates stitched images, and then allows downstream<br>analysis including cell segmentation, cell gating, data normalization, dimension reduction plots (tSNE, UMAP), heat<br>maps, distance analyses and cluster analyses, all of which are interactively linked together. The MACSima system is<br>continuously evolving, this is the second OMAP for the MACSima system.
DOI: 10.17026/ar/dkx7eh
title: Replication Data for: Transect-rapport 5876: Utrecht, Achter de Dom 20-24 en Achter Sint Pieter 23-27 Gemeente Utrecht (UT) Inventariserend Veldonderzoek (verkennende fase)

description: Op basis van het veldonderzoek kunnen de volgende constateringen worden gedaan:
• Het plangebied grenst of ligt in het zuidoosten in de laatmiddeleeuwse restgeulvulling van de Oude 
Rijn. In de opvulling is veen aanwezig en een waterbodem. Mogelijkerwijs is er een verband met de 
middeleeuwse burchtgracht, die deels in de oude restgeul van de Oude Rijn zou kunnen zijn 
aangelegd. De aangetroffen geulafzettingen in de boringen suggereren in ieder geval dat hier ook 
een natuurlijke restgeul gelegen heeft.
• De top van de oeverafzettingen in het plangebied ligt op 1,3-1,6 m NAP. Deze oeverafzettingen 
liggen in het noordwesten van het plangebied. Dit is iets hoger dan de hoogteligging van het 
Romeinse niveau in de omgeving van het plangebied, waar het op 0,5-1,1 m NAP gelegen is. 
Getuige de aanwezigheid van bot, fosfaat en veel houtskool in de oeverafzettingen zijn op dit 
niveau in ieder geval archeologische resten aanwezig, naar verwachting uit de Romeinse tijd (en 
mogelijk Vroege Middeleeuwen). De grote hoeveelheid houtskool in de oeverafzettingen kan 
verband houden met verschillende bekende branden in deze periode (zie Verboom-Jansen, 2024).
• De top van het laatmiddeleeuwse niveau bevindt zich op een diepte van circa 2,3 m NAP. Deze 
hoogte sluit aan op de resultaten van onderzoeken in de omgeving (2,0-4,1 m NAP).
• Binnen de aangetroffen ophogingen zijn in ieder geval twee ophogingslagen te onderscheiden, 
waarvan er één in de Late Middeleeuwen dateert en één in de Nieuwe tijd.
• Een aantal boringen is gestaakt in ondergrondse obstakels. Gezien de het voorkomen van deze in 
één van de ophogingslagen wordt aangenomen dat deze in alle boringen van archeologische 
Overijsselhaven 127
3433 PH Nieuwegein
T: 030-7620705
E: informatie@transect.nl
waarde zijn. Puin dat zich binnen 100-120 cm -Mv bevindt, kan relateren aan bebouwingsresten of 
achtererf-gerelateerde resten uit de Nieuwe tijd, terwijl op een dieper niveau (houten) 
constructies uit de Middeleeuwen te verwachten zijn.
• Op basis van de boringen kan worden gesteld dat de ondergrond in het plangebied grotendeels 
intact is. In de meeste boringen is de moderne verstoring beperkt tot de bouwvoor, die een dikte 
heeft van circa 15-70 cm. Lokaal is in boring 4 een wat diepere verstoringen aanwezig, hetgeen het 
gevolg is van het plantgat van een boom op deze plek (100 cm -Mv). Er zijn verder geen 
diepreikende verstoringen aangetoond binnen de onderzochte delen van het plangebied.
• Oorspronkelijk geplande boorlocaties 15 en 16 konden niet worden gezet vanwege het ontbreken 
van toegang tot deze plek. Van deze plek is het echter de verwachting dat de plek verstoord is. Het 
betreft hier een strook van 60-90 cm breed, die grenst aan de onderkelderde fietsenkelder. De 
kans dat de strook voor de aanleg van de kelder is uitgegraven, is zeer groot.
DOI: 10.48539/hbm796.wlll.599
title: Blood Vasculature Geometry, v1.0

description: This table provides geometric properties (e.g., length and diameter) of selected vessels in the blood vasculature<br>Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table. The same vessel geometric property might be listed<br>multiple times with different values. These correspond to different references that reported the property.
DOI: 10.48539/hbm325.ptqs.258
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Kidney, v1.0

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture the nested *part_of* structure of anatomical human body parts, the typology of cells, and biomarkers used to<br>identify cell types. The tables are authored and reviewed by an international team of experts.
DOI: 10.48539/hbm555.xtkb.342
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Placenta Full Term, v1.1

description: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables (https://humanatlas.io/asctb-tables) aim to capture<br>anatomical human body parts, the typology of cells, and biomarkers used to identify cell types. The tables are<br>authored and reviewed by an international team of experts. The Placenta ASCT+B table represents terms related to the<br>full-term human placenta. These include both macroscopic and microscopic anatomical structures, major cell types, and<br>protein and lipid biomarkers specific for each cell type listed. This table was generated based on published placental<br>histopathologic nomenclature, as well as published literature on cell-type specific biomarkers. Most of the markers<br>listed are observed in more than one study or orthogonally validated. Note that these are predicted markers and a<br>single marker to annotate a cell type is not likely sufficient or specific. Where more refined cell types are not<br>available in the ontologies, the closest general term is used. For example, there are likely multiple types of<br>placental stromal cells; however, further characterization is needed to distinguish between these cell types. Where<br>cells of similar type occur in different locations, the closest and highest level of resolution available is used. For<br>example, vascular endothelial cells (CL:0000071) occur in multiple different contexts within the placenta, including<br>the umbilical vessels, chorionic plate vessels, chorionic stem villous vessels and capillaries, and decidual vessels;<br>similarly, vascular smooth muscle cells (CL:0000359) occur in umbilical vessels, chorionic plate vessels, and<br>chorionic stem villous vessels.<br><br>**Bibliography:**<br><br>* Yadav, Archana, Kaya J. E. Matson, Li Li, Isabelle Hua, Joana Petrescu, Kristy Kang, Mor R. Alkaslasi, et al. 2023. “A Cellular Taxonomy of the Adult Human Spinal Cord.” *Neuron* 111 (3): 328-344.e7. https://doi.org/10.1016/j.neuron.2023.01.007.
DOI: 10.48539/hbm837.qhlp.485
title: Lymph Vasculature Organ Crosswalk, v1.0

description: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables (https://humanatlas.io/asctb-tables) aim to capture<br>anatomical human body parts, the typology of cells, and biomarkers used to identify cell types. The tables are<br>authored and reviewed by an international team of experts. This table provides a crosswalk from structures in the<br>lymph vasculature ASCT+B table to anatomical structures in other organ ASCT+B tables. The Relationship column<br>indicates that the lymphatic structure “drains” the anatomical structure in the BodySubPart column. The BodySubPart<br>structure is contained within the anatomical structure listed in the BodyPart column. The BodyPart is typically an<br>organ or organ system. IDs are provided for the LymphStructure, BodySubPart, BodySubPartSequence, BodyPart, FTU, and<br>Angiosome columns to enable linkage to other datasets and ontologies. NOTE: In this version 1.0 crosswalk file, the<br>only BodyPart and BodySubPart is the arm. There is no BodySubPartSequence, FTU or Angiosome information. These are<br>placeholders for future versions of this crosswalk.
DOI: 10.15468/dl.zwvm2w
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material citation)",
 "Country is Pakistan",
 "OccurrenceStatus is Present",
 "TaxonKey is Gyps himalayensis",
 "Year 2000-2025"
 ]
}

 The dataset includes 114 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053567-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng345w
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum dulcamara",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 57 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053573-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm823.vzgj.394
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Lung, v1.4
DOI: 10.15468/dl.r59nwn
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum dulcamara",
 "Country is Bulgaria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 85 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053575-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm792.mphz.454
title: Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Anatomical Systems, v1.1
DOI: 10.15468/dl.b68ybz
title: Occurrence Download

description: A dataset containing 30667 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sonchus palustris"
 ]
}

 The dataset includes 30667 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053565-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48539/hbm525.kfgv.228
title: Blood Vasculature Organ Crosswalk, v1.1

description: [Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) tables](https://humanatlas.io/asctb-tables) aim to<br>capture anatomical human body parts, the typology of cells, and biomarkers used to identify cell types. The tables are<br>authored and reviewed by an international team of experts. This table provides a crosswalk from vessels in the blood<br>vasculature ASCT+B table to anatomical structures in other organ ASCT+B tables. The Relationship column indicates<br>whether the vessel is “part_of”, “overlaps”, “supplies”, “drains”, “directly_supplies_drains”, “located_in”, or<br>“connected_to” the anatomical structure in the BodySubPart column.
DOI: 10.5281/zenodo.17100451
title: Force-Lines as Information Carriers: Diffraction, Raychaudhuri Focusing, and Beyond - Weber

description: Force-Lines (Paper 5)This research note proposes a unifying lens on fundamental forces: the force-line hypothesis, where information is carried not by fields alone but by deeper geometric structures. Photonic force-lines naturally spread, requiring external refocusing (telescopes, diffraction limits). Gravitational force-lines, by contrast, intrinsically self-focus, obeying the Raychaudhuri equation and driving gravitational lensing with lossless information transport.

We argue that “spread” is not “entropy.” Photons can traverse 13–14.5 billion years of cosmic expansion and still reconstruct original images when detected, because force-lines preserve topological information across spacetime. This perspective reframes surface-brightness conservation, lensing magnification, and even biological perception as manifestations of knot closure at detection.

A speculative extension suggests that forces may represent different frequency or harmonic regimes of the same underlying geometry: photons (high-frequency spreading), gravity (low-frequency focusing), with electromagnetism and other forces as intermediates.

The mathematics is anchored in established optics (diffraction limits, angular diameter distances), general relativity (Raychaudhuri focusing, Liouville invariance), and information theory (Shannon invariants). From this base, we outline testable predictions — including lossless information invariants under lensing, phase correlations in gravimetry, and metamaterial analogs bridging spreading and focusing regimes.

This is a speculative invitation. The framework is meant to stimulate collaboration, critique, and experimental testing. If correct, it suggests a path to unifying spread and focus phenomena under a single principle of force-line information invariance. email:  robertjweber@gmail.comFeel free to contact me for a open discussion to help us all.  May these topics echo in your thoughts and imagination that leads to truth and elegance.  RJW
DOI: 10.5281/zenodo.17100452
title: Force-Lines as Information Carriers: Diffraction, Raychaudhuri Focusing, and Beyond - Weber

description: Force-Lines (Paper 5)This research note proposes a unifying lens on fundamental forces: the force-line hypothesis, where information is carried not by fields alone but by deeper geometric structures. Photonic force-lines naturally spread, requiring external refocusing (telescopes, diffraction limits). Gravitational force-lines, by contrast, intrinsically self-focus, obeying the Raychaudhuri equation and driving gravitational lensing with lossless information transport.

We argue that “spread” is not “entropy.” Photons can traverse 13–14.5 billion years of cosmic expansion and still reconstruct original images when detected, because force-lines preserve topological information across spacetime. This perspective reframes surface-brightness conservation, lensing magnification, and even biological perception as manifestations of knot closure at detection.

A speculative extension suggests that forces may represent different frequency or harmonic regimes of the same underlying geometry: photons (high-frequency spreading), gravity (low-frequency focusing), with electromagnetism and other forces as intermediates.

The mathematics is anchored in established optics (diffraction limits, angular diameter distances), general relativity (Raychaudhuri focusing, Liouville invariance), and information theory (Shannon invariants). From this base, we outline testable predictions — including lossless information invariants under lensing, phase correlations in gravimetry, and metamaterial analogs bridging spreading and focusing regimes.

This is a speculative invitation. The framework is meant to stimulate collaboration, critique, and experimental testing. If correct, it suggests a path to unifying spread and focus phenomena under a single principle of force-line information invariance. email:  robertjweber@gmail.comFeel free to contact me for a open discussion to help us all.  May these topics echo in your thoughts and imagination that leads to truth and elegance.  RJW
DOI: 10.3929/ethz-b-000613779
title: Datasets to "The origin of magneto-structural coupling in Fe-based bulk metallic glasses"
DOI: 10.17026/ar/ccmx2l
title: Replication Data for: Transect-rapport 6002: Vianen, Ir. D.S. Tuijnmanweg, fase 2 Gemeente Vijfheerenlanden (UT) Een inventariserend veldonderzoek d.m.v. proefsleuven, karterende en waarderende fase

description: Er zijn vier sporen aangetroffen, zijnde greppels. De greppels dateren uit de Nieuwe Tijd, 
hoogstwaarschijnlijk binnen de dateringsspanne van de 17e
tot en met de 20e eeuw. Er zijn 138 
vondsten gedaan. Deze zijn hoofdzakelijk afkomstig uit bodemlagen. Alle vondsten dateren uit de 
Nieuwe Tijd, met een specifiekere dateringsspanne van de 17e
tot en met de 19e eeuw. Het betreft 
voornamelijk aardewerk en keramisch bouwmateriaal. De middelhoge verwachting op het aantreffen 
van archeologische resten uit de IJzertijd en de Romeinse en de hoge verwachting op het aantreffen 
van archeologische resten uit de Middeleeuwen en Nieuwe Tijd is met dit onderzoek niet bevestigd. In 
plaats daarvan zijn sporen van landbewerking en terreinrichting uit de late Nieuwe tijd gevonden. In 
het plangebied zijn kom- en oeverafzettingen aangetroffen. Laatstgenoemde behoren tot de Vuylkopstroomgordel. In een deel van het plangebied is enkel de top van de oeverafzettingen aangetroffen 
door moderne verstoringen of ophogingszand.