cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4438620
title: Beyondcell: targeting cancer therapeutic heterogeneity in single-cell RNA-seq

description: <strong>Beyondcell </strong>is a methodology for the identification of drug vulnerabilities in single cell RNA-seq data. To this end, <strong>Beyondcell</strong> focuses on the analysis of drug-related commonalities between cells by classifying them into distinct therapeutic clusters. We have validated the tool in a population of MCF7-AA cells exposed to 500nM of bortezomib and collected at different time points: t0 (before treatment), t12, t48 and t96 (72h treatment followed by drug wash and 24h of recovery) obtained from <strong><em>Ben-David U, et al., Nature, 2018</em></strong>. Here, you can find the integrated Seurat object obtained from this analysis. This object is meant to help users follow <strong>Beyondcell's</strong> analysis workflow.
description: The original single-cell data can be accessed through the Gene Expression Omnibus (GEO), accession number GSE114462.
DOI: 10.5281/zenodo.4662454
title: View-Dependent Progressive Transmission Method for 3D Building Models

description: 这是论文“ 3D建筑模型的视图相关渐进传输方法”中的实验数据
DOI: 10.5281/zenodo.4588293
title: A fine-resolution soil moisture dataset for China in 2002~2018

description: Soil moisture is one of the key parameters for flood forecast, drought detection, crop yield estimation, weather prediction and hydrological modeling. Passive microwave remote sensing technology can quickly obtain soil moisture over large areas, but the coarse spatial resolution imposes great limitations. In order to improve the temporal and spatial resolution of soil moisture products, we built a spatial weight decomposition model to improve the resolution of soil moisture products. The validation and application analysis indicate that new product can meet application needs. SMC versions 2.0 is on the basis of 1.0 is a blend of precipitation data and an improved global remote-sensing-based surface soil moisture (RSSSM) dataset by https://doi.pangaea.de/10.1594/PANGAEA.912597 for further improvement.
DOI: 10.6084/m9.figshare.18585768
title: Additional file 3 of DENA: training an authentic neural network model using Nanopore sequencing data of Arabidopsis transcripts for detection and quantification of N6-methyladenosine on RNA

description: Additional file 3. List of datasets used in this study.
DOI: 10.5281/zenodo.5029530
title: Dataset corresponding to "Comprehensive analysis of a dense sample of FRB 121102 bursts"

description: Raw dataset corresponding to publication: "Comprehensive analysis of a dense sample of FRB 121102 bursts". The dataset consists of raw filterbank format files from the two observations.
DOI: 10.15468/dl.r2axku
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((146.862571 -35.971495, 146.8738 -35.971495, 146.8738 -35.969249, 146.869308 -35.969249, 146.869308 -35.967003, 146.864816 -35.967003, 146.864816 -35.969249, 146.862571 -35.969249, 146.862571 -35.971495)), ((146.862571 -35.971495, 146.855833 -35.971495, 146.855833 -35.97374, 146.862571 -35.97374, 146.862571 -35.971495)))"
 ]
}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048221-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5541367
title: Data-Twilight Photometer-Twilight Airglow

description: This is the Twilight Photometric Data used for the draw the aerosol vertical profiles used in the research paper (Details as follows). Title of the Paper<strong>: Exploring altitudinal resolution </strong><strong>of Twilight airglow red lines using Twilight Photometer</strong> Name of the Author: Pratibha B. Mane Journal Submitted: Earth and Space Science
DOI: 10.5281/zenodo.820783
title: Landslides From Space - Qamea Island Landslides, Fiji (18Th December 2016)

description: A cyclone crossed the islands of Fiji in December 2016. It caused floods and landslide all over the country.<br>
<br>
The pre-event acquisition is from 15th November 2016 (Sentinel-2) and the post-event acquisition is from 14th January 2017 (Sentinel-2). A false colour composite with near-infrared, red and green band is visualised as RGB image.<br>
<br>
<em>Contains modified Copernicus Sentinel data (2016-2017)</em>
description: {"references": ["http://fijisun.com.fj/2016/12/19/landslide-sweeps-dreketi-village/"]}
DOI: 10.5281/zenodo.5511965
title: ANUVUD, calculation of unit geometry and NBO analysis

description: Gaussian 16 (C01) calculation
DOI: 10.6084/m9.figshare.26356480
title: Input files examples for the simulations

description: In this repository, you can find some of the input files of the simulations performed for the paper entitled "Dynamic Thermomechanical Modeling of Rock-Ice Avalanches: Understanding Flow Transitions, Water Dynamics, and Uncertainties".
DOI: 10.6084/m9.figshare.26356480.v1
title: Input files examples for the simulations

description: In this repository, you can find some of the input files of the simulations performed for the paper entitled "Dynamic Thermomechanical Modeling of Rock-Ice Avalanches: Understanding Flow Transitions, Water Dynamics, and Uncertainties".
DOI: 10.15468/dl.nw2s7h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.202693 -32.454573, 149.202693 -32.459065, 149.204939 -32.459065, 149.204939 -32.461311, 149.209431 -32.461311, 149.209431 -32.465802, 149.211676 -32.465802, 149.211676 -32.459065, 149.209431 -32.459065, 149.209431 -32.454573, 149.202693 -32.454573))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048223-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ju7dsh
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.846231 -35.971495, 147.846231 -35.978232, 147.852968 -35.978232, 147.852968 -35.97374, 147.848476 -35.97374, 147.848476 -35.971495, 147.846231 -35.971495))"
 ]
}

 The dataset includes 54 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048224-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8zyvn
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.769873 -35.953528, 147.769873 -35.955774, 147.756399 -35.955774, 147.756399 -35.95802, 147.76089 -35.95802, 147.76089 -35.962511, 147.767628 -35.962511, 147.767628 -35.964757, 147.772119 -35.964757, 147.772119 -35.971495, 147.767628 -35.971495, 147.767628 -35.97374, 147.763136 -35.97374, 147.763136 -35.978232, 147.790086 -35.978232, 147.790086 -35.97374, 147.785594 -35.97374, 147.785594 -35.971495, 147.783348 -35.971495, 147.783348 -35.964757, 147.776611 -35.964757, 147.776611 -35.960266, 147.772119 -35.960266, 147.772119 -35.953528, 147.769873 -35.953528))"
 ]
}

 The dataset includes 159 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048225-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rec7dq
title: Occurrence Download

description: A dataset containing 3636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer negundo L.",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3636 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048226-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmuccx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.227397 -32.459065, 149.227397 -32.465802, 149.234134 -32.465802, 149.234134 -32.461311, 149.231889 -32.461311, 149.231889 -32.459065, 149.227397 -32.459065))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048227-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.25895365
title: <i>Desmodesmus pseudoperforatus</i> sp. nov., a giant in <i>Desmodesmus</i>, series <i>Maximi</i>

description: Series <i>Maximi</i> is a group within <i>Desmodesmus</i> (Chlorophyta) which contains the three species <i>D. maximus, D. perforatus</i> and <i>D. tropicus</i>. Besides their large cell sizes, the most striking morphological trait unique to the members of this genus is the presence of large perforations between the coenobial cells. The perforations are either present (<i>D. perforatus</i> and <i>D. tropicus</i>) or the space between the cells is completely sealed (<i>D. maximus</i>). We report here a fourth species of the series based on two strains (AICB 1155 and AICB 1572) from freshwater environments of the Danube Delta, Romania. The ultrastructure of the cell walls revealed a partial closure of the space between the cells which creates slightly visible perforations in light microscopy. Analyses of DNA sequences and secondary structure of the ITS2 fragment by coalescent (PTP, GMYC), distance (ASAP), and evolutionary modelbased methods (ML, BI) indicated a fourth candidate species which included both the AICB strains investigated and other strains with similar morphological traits from reference literature. Despite its poor representation in public databases, analysis of the SSU rDNA gene for the series <i>Maximi</i> strengthened the ITS2 results. Therefore, based on its larger cell sizes relative to the other members of the series, cell morphology, the presence of partial perforations and other peculiarities of the cell wall ultrastructure, the independent phylogenetic position, CBCs analysis, and a different ‘DNA signature’ within the ITS2 fragment we suggest that this clade should be described as a new taxon of the series <i>Maximi, Desmodesmus pseudoperforatus</i> sp. nov. Morphological differences and DNA-based lines of evidence indicate new species.Microperforations of the space between the coenobial cells.Strains have the largest cell sizes in the series <i>Maximi.</i> Morphological differences and DNA-based lines of evidence indicate new species. Microperforations of the space between the coenobial cells. Strains have the largest cell sizes in the series <i>Maximi.</i>
DOI: 10.6084/m9.figshare.25895365.v1
title: <i>Desmodesmus pseudoperforatus</i> sp. nov., a giant in <i>Desmodesmus</i>, series <i>Maximi</i>

description: Series <i>Maximi</i> is a group within <i>Desmodesmus</i> (Chlorophyta) which contains the three species <i>D. maximus, D. perforatus</i> and <i>D. tropicus</i>. Besides their large cell sizes, the most striking morphological trait unique to the members of this genus is the presence of large perforations between the coenobial cells. The perforations are either present (<i>D. perforatus</i> and <i>D. tropicus</i>) or the space between the cells is completely sealed (<i>D. maximus</i>). We report here a fourth species of the series based on two strains (AICB 1155 and AICB 1572) from freshwater environments of the Danube Delta, Romania. The ultrastructure of the cell walls revealed a partial closure of the space between the cells which creates slightly visible perforations in light microscopy. Analyses of DNA sequences and secondary structure of the ITS2 fragment by coalescent (PTP, GMYC), distance (ASAP), and evolutionary modelbased methods (ML, BI) indicated a fourth candidate species which included both the AICB strains investigated and other strains with similar morphological traits from reference literature. Despite its poor representation in public databases, analysis of the SSU rDNA gene for the series <i>Maximi</i> strengthened the ITS2 results. Therefore, based on its larger cell sizes relative to the other members of the series, cell morphology, the presence of partial perforations and other peculiarities of the cell wall ultrastructure, the independent phylogenetic position, CBCs analysis, and a different ‘DNA signature’ within the ITS2 fragment we suggest that this clade should be described as a new taxon of the series <i>Maximi, Desmodesmus pseudoperforatus</i> sp. nov. Morphological differences and DNA-based lines of evidence indicate new species.Microperforations of the space between the coenobial cells.Strains have the largest cell sizes in the series <i>Maximi.</i> Morphological differences and DNA-based lines of evidence indicate new species. Microperforations of the space between the coenobial cells. Strains have the largest cell sizes in the series <i>Maximi.</i>
DOI: 10.6084/m9.figshare.25714445
title: Morphological diversity and phylogeny of the palmelloid chrysophyte genera <i>Chrysotilos</i> and <i>Globulochrysis</i>, gen. nov

description: Chrysophytes are a diverse group of stramenopile protists comprising a variety of taxa with different cell organizations. Here, we morphologically and genetically characterize a novel chrysophyte genus isolated from three freshwater localities in the Czech Republic, described as <i>Globulochrysis compacta</i> gen. nov. sp. nov. The genus is well characterized by the frequent formation of closely packed cells, developing into large, spherical sporangia. This alga also forms solitary cells, mucilaginous colonies, amoebae, and teardrop-shaped zoids. We also investigated the morphologically similar genus <i>Chrysotilos</i>, isolated from its type locality in the Austrian Alps. In culture, <i>Chrysotilos</i> showed characteristic neustonic growth, which was, however, not observed in <i>Globulochrysis</i>. Phylogenetic analyses based on 18S rRNA and <i>rbc</i>L genes showed that these two algae belong to two distinct lineages. Whereas <i>Chrysotilos</i> was inferred within the clade Hibberdiales, <i>Globulochrysis</i> formed a completely new lineage within the order Hydrurales. <i>Globulochrysis</i> is described as a new genus in Hydrurales, Chrysophyceae.The genus is characterized by closely packed cells.The phylogenetic position of neustonic <i>Chrysotilos</i> is determined. <i>Globulochrysis</i> is described as a new genus in Hydrurales, Chrysophyceae. The genus is characterized by closely packed cells. The phylogenetic position of neustonic <i>Chrysotilos</i> is determined.
DOI: 10.6084/m9.figshare.25714445.v1
title: Morphological diversity and phylogeny of the palmelloid chrysophyte genera <i>Chrysotilos</i> and <i>Globulochrysis</i>, gen. nov

description: Chrysophytes are a diverse group of stramenopile protists comprising a variety of taxa with different cell organizations. Here, we morphologically and genetically characterize a novel chrysophyte genus isolated from three freshwater localities in the Czech Republic, described as <i>Globulochrysis compacta</i> gen. nov. sp. nov. The genus is well characterized by the frequent formation of closely packed cells, developing into large, spherical sporangia. This alga also forms solitary cells, mucilaginous colonies, amoebae, and teardrop-shaped zoids. We also investigated the morphologically similar genus <i>Chrysotilos</i>, isolated from its type locality in the Austrian Alps. In culture, <i>Chrysotilos</i> showed characteristic neustonic growth, which was, however, not observed in <i>Globulochrysis</i>. Phylogenetic analyses based on 18S rRNA and <i>rbc</i>L genes showed that these two algae belong to two distinct lineages. Whereas <i>Chrysotilos</i> was inferred within the clade Hibberdiales, <i>Globulochrysis</i> formed a completely new lineage within the order Hydrurales. <i>Globulochrysis</i> is described as a new genus in Hydrurales, Chrysophyceae.The genus is characterized by closely packed cells.The phylogenetic position of neustonic <i>Chrysotilos</i> is determined. <i>Globulochrysis</i> is described as a new genus in Hydrurales, Chrysophyceae. The genus is characterized by closely packed cells. The phylogenetic position of neustonic <i>Chrysotilos</i> is determined.
DOI: 10.15468/dl.5zg4wp
title: Occurrence Download

description: A dataset containing 3197 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.792331 -35.964757, 147.808052 -35.964757, 147.808052 -35.97374, 147.799069 -35.97374, 147.799069 -35.978232, 147.808052 -35.978232, 147.808052 -35.980478, 147.814789 -35.980478, 147.814789 -35.97374, 147.817035 -35.97374, 147.817035 -35.971495, 147.821527 -35.971495, 147.821527 -35.969249, 147.812544 -35.969249, 147.812544 -35.960266, 147.808052 -35.960266, 147.808052 -35.962511, 147.799069 -35.962511, 147.799069 -35.960266, 147.794577 -35.960266, 147.794577 -35.962511, 147.792331 -35.962511, 147.792331 -35.964757)), ((147.792331 -35.964757, 147.785594 -35.964757, 147.785594 -35.969249, 147.792331 -35.969249, 147.792331 -35.964757)), ((147.814789 -35.980478, 147.814789 -35.984969, 147.817035 -35.984969, 147.817035 -35.980478, 147.814789 -35.980478)), ((147.817035 -35.980478, 147.821527 -35.980478, 147.821527 -35.978232, 147.817035 -35.978232, 147.817035 -35.980478)))"
 ]
}

 The dataset includes 3197 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048228-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/163
title: Dataset associated with 'Ultrafast switch-on dynamics of frequency tuneable semiconductor lasers'

description: This dataset contains experimental data presented in the paper titled 'Ultrafast switch-on dynamics of frequency tuneable semiconductor lasers'. Single-mode frequency-tuneable semiconductor lasers based on monolithic integration of multiple cavity sections are important components, widely used in optical communications, photonic integrated circuits, and other optical technologies. To date, investigations of the ultrafast switching processes in such lasers, essential to reduce frequency cross-talk, have been restricted to the observation of intensity switching over nanosecond-timescales. Here, we report coherent measurements of the ultrafast switch-on dynamics, mode competition and frequency selection in a monolithic frequency-tuneable laser using coherent time-domain sampling of the laser emission. This approach allows us to observe hopping between lasing modes on picosecond-timescales and the temporal evolution of transient multi-mode emission into steady-state single mode emission. The underlying physics is explained through a full multi-mode, temperature dependent carrier and photon transport model. Our results show that the fundamental limit on the timescales of frequency-switching between competing modes varies with the underlying Vernier alignment of the laser cavity.
DOI: 10.15468/dl.uqkgu9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.23638 -32.459065, 149.23638 -32.461311, 149.240872 -32.461311, 149.240872 -32.459065, 149.23638 -32.459065))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048230-240626123714530/datasets/export for details.
DOI: 10.57745/6yx0gk
title: README.txt

description: explain what are the above files
DOI: 10.57745/gvfe10
title: DatasetS8_CNV_analysis_results_of_the_123_P_viticola_strains_used_in_this_study

description: :unav
DOI: 10.57745/ig2i5p
title: DatasetS3_Fasta_file_of_the_11_avrRpv3.1-like_genes_and_3_P_halstedii_effector_genes

description: :unav
DOI: 10.57745/ubmokr
title: DatasetS2_Multi-alignment_of_the_11_avrRpv3.1-like_genes_and_3_P_halstedii_effector_genes

description: :unav
DOI: 10.57745/1gsuww
title: DatasetS5_RNAseq_analysis

description: :unav
DOI: 10.57745/7ftyhb
title: DatasetS1_The_origin_information_of_the_123_P_viticola_strains_used_in_this_study

description: :unav
DOI: 10.57745/8c7gdd
title: DatasetS6 Filtered_vcf_of_the_123_P_viticola_strains_used_in_this_study

description: vcf filtered of 123 strains
DOI: 10.57745/elelri
title: SI_Paineau2023_dataverse.pdf

description: List of Supplemental methods:

Methods S1 Plasmopara viticola propagation. Methods 52 Plasmopara viticola inoculation. Methods S3 DNA extraction.
Methods S4 Sequencing.
Methods S5 Variant Calling.
Methods 56 Quality control.
Methods S7 Population structure.
Methods 58 Genome reassembly procedure and annotation.
Methods 59 Phylogenetic analyses of the aviRpv3.1-likegene sequences.
Methods S10Population genetic analysis.
Methods S1 avrRpv3.1 locus analysis of the virulent strain aviRpv12-13-andPv412. Methods S12Gene expression analysis.
List of Supplemental Figures:
Fig. S1 Linear correlation between the sporulation area on Cabernet Sauvignon and Regent. Fig. S2 Principal component analysis realized with a subset of 18,069SNPs.
Fig. S3 Quantile-quantile plot associated with Figure .1
Fig. S4 Manhattan plot of scaffolds PIvit038 and Plvit053 where the significant loci are located.
Fig. S5 Alignment of the sequences of Plvit038 and Plvit053 against INRA-Pv221reference
genome.
Fig. 6S Alignment of hte sequences of the Haplotig_000014F_004against hte Primary_000014F. Fig. S7 Maximum likelihood phylogenetic tree of the 1 protein sequences of Plasmopara
viticola identified as avrRpv3.1-likegenes and three similar proteins found ni the closely-related species Plasmopara has|tedii.
Fig. S8 Patterns of coverage ni the locus (1/2).
Fig. S9 Patterns of coverage in the locus (2/2).
Fig. S10Representation of the seven aleles identified ni the 123P. viticola trains analyzed ni this study.
Fig. S11Genomic structure at the avrRpv3.1 locus for each P. viticola strains associated with their phenotype.
Fig. S12Patterns of coverage ni the locus avrRpv3.1 of the strain "avrRpv12-13-"from Wingerter et. al. (2021).
Fig. S13Patterns of coverageni the locus avrRpv3.1 of the strain Pv412_11 from Paineau et. al. (2022).
Fig. S14 Distribution of Weir and CockerhamFST across the entire contig and the specific FST value computed for the avrRpv3.1 locus.
Fig. S15 Conserved amino-acid motifs ni avrRpv3.1-like proteins.
Fig. S16 Confidence metrics of the g166predicted tertiary structure.
Fig. S17g166structural domains do not fit the LWY domain fold.
Fgi. S18PCRs on genomic DNA from P. viticola strain Pv21 and the strain Pv412_1.'
Fig. S19 Semi-quantitative RT-PCRshowing expression of g164, g165 and g166 ni germinated spores and infected tissues.

List of Supplemental tables:
TableS1 Statistics of the INRA-Pv221 genome reassembly.
DOI: 10.15468/dl.behzeb
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.855214 -35.97374, 147.855214 -35.978232, 147.861951 -35.978232, 147.861951 -35.97374, 147.855214 -35.97374))"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048232-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wexdsj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.800076 -32.477031, 149.800076 -32.483769, 149.802322 -32.483769, 149.802322 -32.477031, 149.800076 -32.477031))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048233-240626123714530/datasets/export for details.