cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.969462
title: Chlorophyll a in under-ice seawater during the onset of sea ice melt in Young Sound, Northeast Greenland, in 2014

description: Our study took place in under-ice seawater of Young Sound-Tyrolerfjord in Northeast Greenland between 30 May and 23 June, 2014. Samples for chlorophyll-a (Chl-a) were collected at depths of 0 and 1 m in under-ice seawater. To determine the Chl-a concentration, seawater was filtered using Whatman GF/C glass-fiber filters. Filters were then stored frozen in aluminum foil until measurement at the home laboratory in Aarhus University, Denmark where filters were extracted in 10 mL acetone at 4 °C for 16 h. The Chl-a concentrations were subsequently determined using a Turner Design TD700 fluorometer.
DOI: 10.1594/pangaea.969461
title: Continuous measurements of pCO2 in under-ice seawater during the onset of sea ice melt in Young Sound, Northeast Greenland, in 2014

description: Our study took place in under-ice seawater of Young Sound-Tyrolerfjord in Northeast Greenland between 1 and 30 June 2014. The partial pressure of CO2 (pCO2) using a CONTROS HydroC® CO2 and seawater temperature and salinity using a SBE37SM were measured continuously at high frequency of 0.2 Hz at roughly 2.5 m below the sea ice.
DOI: 10.1594/pangaea.975231
title: Primal, chemo and bacterial productivety coupled with inorganic nutrient concentrations from an off shore, out going transect cruises

description: Here, we report on both photic and aphotic primary productivity, dark carbon fixation and heterotrophic bacterial production rates from 6 cruises conducted in 2021-2023 at the offshore Southeastern Mediterranean Sea at stations covering the continental shelf (seafloor &lt;200m), slope (200-1000m), and the offshore environments (maximum bottom ~1750 m) during the mixed (winter) and stratified (summer) periods. These cruises were conducted as part of the Israeli monitoring program.Samples where collected at discrete depths for carbon fixation productivity rates. Using a modified NaH14CO3 incorporation method (Nielsen 1952 10.1093/icesjms/18.2.117) we measured net, light (photosynthesis) and dark (chemosynthesis) productivity. Bacterial production was measured using the 3H-leucine incorporation method. Water samples were also collected for inorganic nutrient (Si(OH)4, PO4, NO2, NH4 and NO3) concentration measurements. These data were collected to better understand how much dark carbon fixation by chemoautotrophs contributes to net production in low nutrient, low chlorophyll areas. The data cover seasonal (summer, winter), spatial (continental, slope and open ocean) and vertical (photic and aphotic depths) to contrast the changes in these parameters for a better view of this dynamic system. All water samples were collected using Niskin bottles. Nutrient concentration were measured with a Seal Analytical AA-3 system, and productivety samples were measured with a TRI-CARB 4810 TR (Packard) liquid scintillation counter.
DOI: 10.22002/246ek-85r88
title: Myxococcus xanthus delta-pilA

description: grid box YWC059
description: <strong>Tilt Series Date:</strong> 2013-12-28</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -4 offset, 4 sec blot time, 1s drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 Finder. 20 nm gold beads.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-28-54/rawdata/</p>20131228_Janelia_YWC059_10030.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-28-54/rawdata/20131228_Janelia_YWC059_10030.mrc"
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        20131228_Janelia_YWC059_10030_part131_9.rec,  Reconstruction (Pixel Size 1.68 nm), 688.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.1594/pangaea.931853
title: Depth integrated biogeochemical and ecophysiological monitoring at station KB3 in Kongsfjorden (2016-2018)

description: The project AWI-funded AMUST project aims at understanding at current and future controls of Arctic spring blooms and concurrrent effetcs on biogeochemistry,by combining experimental work with long-term monitoring in April and May each year to study the Kongsfjorden spring bloom. This dataset was also used in the FAABulous project to compare spring bloom phenology in open-water and ice-covered fjords. Environmental as well as biological (stoichiometry and photosynthesis) data from the years 2014, and 2016-2018 for the mid-fjord station KB3 were samples. Furthermore, daily average temperature and salinity from a nearby mooring (see Hop et al. 2019 for details) are provided for the study period.
DOI: 10.1594/pangaea.944390
title: Determination of inorganic and organic pollutants in a dated sediment core of the Skagerrak (North Sea)

description: We investigated 90 contaminants covering inorganic and organic pollutants analyzed in a set of sediment cores taken in the North Sea (Skagerrak). The cores were taken by the German Federal Maritime and Hydrographic Agency (BSH) in August 2017 on the RV CelticExplorer (Cruise CE17013a) using a multi corer (MUC, Oktopus, Kiel, Germany) at 57° 49.8 N and 7° 59.9 E at 520 m water depth. Samples were radiometrically dated and analyzed for the mass fractions of eight elements, as well as Pb isotope ratios by (MC) ICP-MS. Analysis of 61 HOCs was carried out using accelerated solvent extraction followed by GC–MS/MS analysis. Determination of 21 PFAS was carried out following DIN 38414-14, 2011, using LC-MS/MS. Furthermore, concentrations of 12 PAHs and 7 PCBs in porewaters were determined using equilibrium passive sampling and GC-MS analysis. Determined mass fractions decreased towards more recent deposited sediment for most analyzed contaminants. These trends could be linked to the time of introductions of restrictions and bans. Therefore, our results confirm, amongst possible other factors, the effectiveness of environmental legislation by revealing a successive change in contamination levels over the decades.
DOI: 10.1594/pangaea.772893
title: Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) raw data of surface water samples during POLARSTERN cruise ANT-XXV/1
DOI: 10.1594/pangaea.772894
title: Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) raw data during POLARSTERN cruise ANT-XXV/1
DOI: 10.22002/cwq99-r2g70
title: Myxococcus xanthus delta-tsaP

description: grid box YWC065
description: <strong>Tilt Series Date:</strong> 2013-12-27</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -4 offset, 4 sec blot time, 1s drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 Finder. 10 nm gold beads.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-27-9/rawdata/</p>20131227_YWC065_10009.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-27-9/rawdata/20131227_YWC065_10009.mrc"
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        20131227_YWC065_10009_part131_1.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
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DOI: 10.15468/dl.mbhthc
title: Occurrence Download

description: A dataset containing 398932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico)",
 "Geometry POLYGON((-127.02646 45.16212,-118.89439 8.67954,-96.82165 14.74333,-118.89439 45.29847,-127.02646 45.16212))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Recurvirostra americana",
 "Year 2000-2025"
 ]
}

 The dataset includes 398932 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048294-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.963886
title: Metal distribution for sediment samples of Ludwig Prandtl cruise LP20200629

description: Offshore wind energy is a steadily growing sector contributing to the worldwide energy production. The impact of these offshore constructions on the marine environment, however, remains unclear in many aspects. In fact, little is known about potential emissions from corrosion protection systems such as organic coatings or galvanic anodes composed of Al and Zn alloys, used to protect offshore structures. In order to assess potential chemical emissions from offshore wind farms and their impact on the marine environment water and sediment samples were taken in and around offshore wind farms of the German Bight between 22.07.2020 and 25.07.2020 within the context of the Hereon-BSH project OffChEm. The surface sediment samples were taken by a box grab, homogenized, freeze-dried and wet-sieved to gain the &lt;20 µm grain size fraction. The &lt;20 µm grain size fraction was acid digested and measured by ICP-MS/MS for their (trace) metal mass fractions.
DOI: 10.1594/pangaea.925007
title: Inorganic nutrients measured on water bottle samples from CTD Water-sampler system and ice cores during FAABulous project period (2015-2018)

description: The project "Future Algae Blooms" (FAABulous) was funded by the Norwegian Research Council under their OKOSYSTEM call in 2014, and runs from April 2015 until March 2020 (project nr. 243702). This project was intended to show how ongoing climate change will affect the development of algae blooms in sea ice and water in a future Arctic ocean. The final results will consist of an amalgamation of (i) extensive field studies in two Arctic fjord systems with contrasting environmental characteristics, (ii) experiments to study the combined effect of increased light and CO2 on natural algae communities and single species, and (iii) developing models that allow us to study the relative importance (and joint effects) of different stress factors and the effect of these three processes on Arctic algal blooms in sea ice and water, with a special focus on the control of the onset and development of a bloom. Inorganic nutrients were measured in water samples and ice cores throughout the project period from 2015 to 2017.
DOI: 10.22002/ndnx0-sgx31
title: Myxococcus xanthus delta-tsaP

description: Grid box YWC121
description: <strong>Tilt Series Date:</strong> 2014-10-22</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 2 days in 200 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-38/rawdata/</p>20141022_YWC121_40006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-38/rawdata/20141022_YWC121_40006.mrc"
        > <i class="download icon"></i> Download </a></p>

        20141022_YWC121_40006_full.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-10-22-38/3dimage_47436/20141022_YWC121_40006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dbeyh-zba97
title: Myxococcus xanthus delta-pilA

description: grid box YWC059
description: <strong>Tilt Series Date:</strong> 2013-12-28</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -4 offset, 4 sec blot time, 1s drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 Finder. 20 nm gold beads.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-28-15/rawdata/</p>20131228_Janelia_YWC059_10044.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-28-15/rawdata/20131228_Janelia_YWC059_10044.mrc"
        > <i class="download icon"></i> Download </a></p>

        20131228_Janelia_YWC059_10044_part131_9.rec,  Reconstruction (Pixel Size 1.68 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-28-15/3dimage_37183/20131228_Janelia_YWC059_10044_part131_9.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k73jv-wah02
title: E.cloacae-typeV-CdiA+

description: Type V secretion system
description: <strong>Tilt Series Date:</strong> 2014-03-03</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Drs. Davod Low and Chris Hayes, UC Santa Barbara</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grew 2 ml LB culture from stock with Amp 150, Cm 100 till OD ~0.55, induced with 1.5mM IPTG and grown for 4h, then freeze as such, no spinning</p>
<strong>Sample Preparation:</strong> Blot time 3s, Blot off-set -4, 3 ul culture</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-03-03-2/rawdata/</p>atlas10002.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-03-03-2/rawdata/atlas10002.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10002_part121_9.rec,  Reconstruction (Pixel Size 1.92 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-03-03-2/3dimage_39516/atlas10002_part121_9.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16956368
title: Particle Coating Influences Pyrocumulonimbus Smoke Radiative Forcing and Stratospheric Warming: Insights from 2019-2020 Australian Megafires

description: The coated pyroCb smoke optical properties derived from core-shell Mie model assuming external or internal mixing are in MixingMie.zip. The SAGE III/ISS observed aerosol extinction profile and SAOD, and their counterparts from collocated GEOS-Chem simulation are saved in Aerosol.zip. The SW flux anomaly observed by CERES and Fu-liou model simulated ANYSO pyroCb smoke RF and HR are involved in RF_and_HR.
DOI: 10.5281/zenodo.16956369
title: Particle Coating Influences Pyrocumulonimbus Smoke Radiative Forcing and Stratospheric Warming: Insights from 2019-2020 Australian Megafires

description: The coated pyroCb smoke optical properties derived from core-shell Mie model assuming external or internal mixing are in MixingMie.zip. The SAGE III/ISS observed aerosol extinction profile and SAOD, and their counterparts from collocated GEOS-Chem simulation are saved in Aerosol.zip. The SW flux anomaly observed by CERES and Fu-liou model simulated ANYSO pyroCb smoke RF and HR are involved in RF_and_HR.
DOI: 10.22002/613a8-md732
title: Myxococcus xanthus delta-pilQ

description: grid box YWC061
description: <strong>Tilt Series Date:</strong> 2013-12-30</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -4 offset, 4 sec blot time, 1s drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 Finder. 20 nm gold beads.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-30-60/rawdata/</p>20131230_Janelia_YWC061_10011.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.6 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2013-12-30-60/rawdata/20131230_Janelia_YWC061_10011.mrc"
        > <i class="download icon"></i> Download </a></p>

        20131230_Janelia_YWC061_10011_part131_2.rec,  Reconstruction (Pixel Size 1.68 nm), 688.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pg0a5-1wy76
title: Myxococcus xanthus delta-tsaP

description: Grid box YWC115
description: <strong>Tilt Series Date:</strong> 2014-09-15</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 3 days in 220 rpm shaking CTT medium at 30 degrees without antibiotics. OD600=0.8</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. Blot force 3, blot time 3 sec. Wait time 10 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-09-15-34/rawdata/</p>20140915_YWC115_30026.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-09-15-34/rawdata/20140915_YWC115_30026.mrc"
        > <i class="download icon"></i> Download </a></p>

        20140915_YWC115_30026_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-09-15-34/3dimage_46292/20140915_YWC115_30026_full.rec"
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