cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7105001
title: Location, flow–rate, extension of the hydrogeological basin, chemical and isotopic analyses of the 160 springs considered in this study, along with the results of the carbon mass balance. <i>Measuring and interpreting CO<sub>2</sub> fluxes at regional scale: the case of Apennines, Italy</i>

description: Tectonically active regions are often characterized by a large amounts of carbon dioxide degassing, and estimation of the total CO<sub>2</sub> discharged to the atmosphere from tectonic structures, hydrothermal systems and inactive volcanic areas is crucial for the definition of present-day global Earth degassing. The carbon balance of regional aquifers is a powerful tool to quantify the diffuse degassing of deep inorganic carbon sources because the method integrates the CO<sub>2</sub> flux over large areas. Its application to peninsular Italy shows that the region is characterized by specific CO<sub>2</sub> fluxes higher than the baseline determined for the geothermal regions of the world, and that the amount of endogenous CO<sub>2</sub> discharged through diffuse regional degassing (~2.1×1011 mol yr<sup>-1</sup>) is the major component of the geological CO<sub>2</sub> budget of Italy, definitely prevailing over the CO<sub>2</sub> discharged by Italian active volcanoes and volcanoes in hydrothermal activity. Furthermore, the positive correlation between geothermal heat and deep CO<sub>2</sub> dissolved in the groundwater of central Italy suggests that (i) the geothermal heat is transported into the aquifers by the same hot CO<sub>2</sub> rich fluids causing the Italian CO<sub>2</sub> anomaly and (ii) the advective heat flow is the dominant form of heat transfer of the region.
DOI: 10.6084/m9.figshare.7105001.v1
title: Location, flow–rate, extension of the hydrogeological basin, chemical and isotopic analyses of the 160 springs considered in this study, along with the results of the carbon mass balance. <i>Measuring and interpreting CO<sub>2</sub> fluxes at regional scale: the case of Apennines, Italy</i>

description: Tectonically active regions are often characterized by a large amounts of carbon dioxide degassing, and estimation of the total CO<sub>2</sub> discharged to the atmosphere from tectonic structures, hydrothermal systems and inactive volcanic areas is crucial for the definition of present-day global Earth degassing. The carbon balance of regional aquifers is a powerful tool to quantify the diffuse degassing of deep inorganic carbon sources because the method integrates the CO<sub>2</sub> flux over large areas. Its application to peninsular Italy shows that the region is characterized by specific CO<sub>2</sub> fluxes higher than the baseline determined for the geothermal regions of the world, and that the amount of endogenous CO<sub>2</sub> discharged through diffuse regional degassing (~2.1×1011 mol yr<sup>-1</sup>) is the major component of the geological CO<sub>2</sub> budget of Italy, definitely prevailing over the CO<sub>2</sub> discharged by Italian active volcanoes and volcanoes in hydrothermal activity. Furthermore, the positive correlation between geothermal heat and deep CO<sub>2</sub> dissolved in the groundwater of central Italy suggests that (i) the geothermal heat is transported into the aquifers by the same hot CO<sub>2</sub> rich fluids causing the Italian CO<sub>2</sub> anomaly and (ii) the advective heat flow is the dominant form of heat transfer of the region.
DOI: 10.26180/5ba1efac87d3d
title: Additional Simulation Runs for PLOS One Journal

description: Additional Simulation Runs for PLOS One Journal (Calibration/Test)
DOI: 10.6084/m9.figshare.7104368
title: ApRES Internal Layer Power and AWS Data

description: Radar and weather station data collected in 2014 as part of the Subglacial Access and Fast Ice Research Experiment (SAFIRE) and used to quantify englacial water storage in the paper, <i>Surface Meltwater Impounded by Seasonal Englacial Storage in West Greenland</i>. <br>See the following link to the manuscript: https://doi.org/10.1029/2018GL079787<br><br>For additional data from the same field campaign see:https://doi.org/10.6084/m9.figshare.5745294<br><br>And items 112029 and 112009 located athttp://www.bgs.ac.uk/services/ngdc/accessions/index.html
DOI: 10.6084/m9.figshare.7104041
title: Resonant scattering of near-equatorially mirroring electrons by Landau resonance with H + band EMIC waves

description: By investigating the resonant energy and latitudinal resonance region of Landau 28 resonance between H + band EMIC waves and radiation belt electrons and performing 29 calculations of quasi-linear diffusion coefficients, we find that Landau resonance with 30 EMIC waves, characterized by a very broad range of resonant energies from below 1 31 eV to above 10 MeV and the strikingly small extent of the latitudinal resonance region 32 well below 0.1°, can be a feasible candidate accounting for the pitch angle scattering of 33 near-equatorially mirroring electrons. Compared to the dominant pitch angle scattering 34 caused by the cyclotron resonance for &gt; ~ 2 MeV electrons at equatorial pitch angles &lt; 35 ~ 80° with the rates well above 10 -4 s -1 , Landau resonance with H + band EMIC waves 36 has the potential to drive more efficient pitch angle scattering of radiation belt electrons 37 from ~ 10 MeV down to 10’s keV at equatorial pitch angles &gt; ~ 85°.
DOI: 10.6084/m9.figshare.7104368.v1
title: ApRES Internal Layer Power and AWS Data

description: Radar and weather station data collected in 2014 as part of the Subglacial Access and Fast Ice Research Experiment (SAFIRE) and used to quantify englacial water storage in the paper, Surface Meltwater Impounded by Seasonal Englacial Storage in West Greenland.<br>See also: https://doi.org/10.6084/m9.figshare.5745294<br><br>And items 112029 and 112009 located athttp://www.bgs.ac.uk/services/ngdc/accessions/index.html<br><br><br>
DOI: 10.17608/k6.auckland.7104035
title: Gametophyte niche differences among sympatric tree ferns

description: R code and data for submitted Biology Letters paper to be run in conjunction with other data stored in gametophyte ecology project.Data includes:- development to size threshold of gametophytes of three species of <i>Cyathea</i>- germination percentages etc.- irradiance levels in the understorey of varied NZ forest types- orthophosphate concentrations of soils in locations where <i>Cyathea</i> are established<br>
DOI: 10.6084/m9.figshare.7104041.v1
title: Resonant scattering of near-equatorially mirroring electrons by Landau resonance with H + band EMIC waves

description: By investigating the resonant energy and latitudinal resonance region of Landau 28 resonance between H + band EMIC waves and radiation belt electrons and performing 29 calculations of quasi-linear diffusion coefficients, we find that Landau resonance with 30 EMIC waves, characterized by a very broad range of resonant energies from below 1 31 eV to above 10 MeV and the strikingly small extent of the latitudinal resonance region 32 well below 0.1°, can be a feasible candidate accounting for the pitch angle scattering of 33 near-equatorially mirroring electrons. Compared to the dominant pitch angle scattering 34 caused by the cyclotron resonance for &gt; ~ 2 MeV electrons at equatorial pitch angles &lt; 35 ~ 80° with the rates well above 10 -4 s -1 , Landau resonance with H + band EMIC waves 36 has the potential to drive more efficient pitch angle scattering of radiation belt electrons 37 from ~ 10 MeV down to 10’s keV at equatorial pitch angles &gt; ~ 85°.
DOI: 10.17608/k6.auckland.7104014
title: Forest understorey light level data

description: Understorey irradiance levels in different forest types<br>
DOI: 10.17608/k6.auckland.7104014.v1
title: Forest understorey light level data

description: Understorey irradiance levels in different forest types<br>
DOI: 10.17608/k6.auckland.7103903
title: Mature gametophyte data

description: Growth to maturity percentages and germination data for three species of NZ gametophyte grown in 12 treatments of a multi-factorial experiment across two levels of varied irradiance and orthophosphate<br>
DOI: 10.17608/k6.auckland.7104035.v1
title: Analysis Code

description: R code for submitted Biology Letters paper to be run in conjunction with other data stored in gametophyte ecology prohect<br>
DOI: 10.17608/k6.auckland.7103903.v1
title: Mature gametophyte data

description: Growth to maturity percentages and germination data for three species of NZ gametophyte grown in 12 treatments of a multi-factorial experiment across two levels of varied irradiance and orthophosphate<br>
DOI: 10.17608/k6.auckland.7104035.v2
title: Analysis code, gametophyte data etc.

description: R code and data for submitted Biology Letters paper to be run in conjunction with other data stored in gametophyte ecology project.Data includes development to maturity of gametophytes, germination percentages etc. and irradiance levels in the understorey of varied NZ forest types <br>
DOI: 10.17608/k6.auckland.7104035.v3
title: Gametophyte niche differences among sympatric tree ferns

description: R code and data for submitted Biology Letters paper to be run in conjunction with other data stored in gametophyte ecology project.Data includes:- development to size threshold of gametophytes of three species of <i>Cyathea</i>- germination percentages etc.- irradiance levels in the understorey of varied NZ forest types- orthophosphate concentrations of soils in locations where <i>Cyathea</i> are established<br>
DOI: 10.17608/k6.auckland.7104035.v4
title: Gametophyte niche differences among sympatric tree ferns

description: R code and data for submitted Biology Letters paper to be run in conjunction with other data stored in gametophyte ecology project.Data includes:- development to size threshold of gametophytes of three species of <i>Cyathea</i>- germination percentages etc.- irradiance levels in the understorey of varied NZ forest types- orthophosphate concentrations of soils in locations where <i>Cyathea</i> are established<br>
DOI: 10.6084/m9.figshare.7103774
title: Additional file 1: of Estimated intracranial volume from FreeSurfer is biased by total brain volume

description: Simulation script that evaluates the delete-two Jackknife resampling approach that was used in the partial correlation analysis of the present study. The simulation evaluates the risk of getting a false positive finding if there is no total-brain-volume-dependent bias in estimated total intracranial volume from FreeSurfer. The different parameters in the MATLAB script may be changed to see how the risk of getting a false positive finding changes. The current parameters were set to resemble those of the present study. (M 12Â kb)
DOI: 10.6084/m9.figshare.7103774.v1
title: Additional file 1: of Estimated intracranial volume from FreeSurfer is biased by total brain volume

description: Simulation script that evaluates the delete-two Jackknife resampling approach that was used in the partial correlation analysis of the present study. The simulation evaluates the risk of getting a false positive finding if there is no total-brain-volume-dependent bias in estimated total intracranial volume from FreeSurfer. The different parameters in the MATLAB script may be changed to see how the risk of getting a false positive finding changes. The current parameters were set to resemble those of the present study. (M 12Â kb)
DOI: 10.6084/m9.figshare.12214568
title: Data from: Benthic ecosystem cascade effects in Antarctica using Bayesian network inference

description: Data from: Benthic ecosystem cascade effects in Antarctica using Bayesian network inference. This data was originally published in Brasier et al. 2018.<br>Brasier, MJ, Grant, SM, Trathan, PN, Allcock, L., Ashford, O., Blagbrough, H., ... & Enderlein, P. (2018). Benthic biodiversity in the South Orkney Islands Southern shelf marine protected area. <i>Biodiversity</i> , <i>19</i> (1-2), 5-19.<br><br>Discretized data for the BNI analyses for the small and large spatial scales.
DOI: 10.6084/m9.figshare.7103744
title: Additional file 7: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Results from 10,000 randomly sampled values within the defined bounds of parameter space. Graph of average values for each chemical species, percent change with and without sulfur, and methane oxidation with denitrification, including average and standard deviations. (XLSX 993Â kb)
DOI: 10.5281/zenodo.3974480
title: Augmented emission maps: 1199 cc 55 kW Euro 5a diesel engine: update 1

description: In order to enable the sharing of data the emission data for vehicles is standardized. The data exchange format contains all data that is applicable for a specific engine taxonomy code. This specific data set refers to the 1199 cc 55 kW Euro 5a diesel engine that has been applied in the Volkswagen Polo, Seat Ibiza, Skoda Fabia and Skoda Roomster. The standardized emission map has a “.map.txt” extension and is also human readable. The files starts with metadata which contains information about: the engine taxonomy code, total driven kilometers over which the data was gathered, total time in hours over which the data was gathered, the number of vehicles which were tested to create the emission map, the DOI (Digital Object Identifier) reference, Which emission maps are available in the file. The DOI 10.5281/zenodo refers to a meta-data document that provides the full description of the standardized emission map.
DOI: 10.6084/m9.figshare.7103735
title: Additional file 6: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Comparison of model fit and optimized parameters before and after calibration. Fit metrics and model parameters used for the previous model and calibrated model. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.7103744.v1
title: Additional file 7: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Results from 10,000 randomly sampled values within the defined bounds of parameter space. Graph of average values for each chemical species, percent change with and without sulfur, and methane oxidation with denitrification, including average and standard deviations. (XLSX 993Â kb)
DOI: 10.6084/m9.figshare.7103735.v1
title: Additional file 6: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Comparison of model fit and optimized parameters before and after calibration. Fit metrics and model parameters used for the previous model and calibrated model. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.7103714
title: Additional file 4: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: MAG gene list. A table of the presence of genes associated with specific biogeochemical processes within MAGs. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.7103714.v1
title: Additional file 4: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: MAG gene list. A table of the presence of genes associated with specific biogeochemical processes within MAGs. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.7103699
title: Additional file 3: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Top 4 KEGG Genome matches for MAGs and associated biogeochemical processes. Table of KEGG genomes that have the lowest distance to each MAG. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.7103699.v1
title: Additional file 3: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Top 4 KEGG Genome matches for MAGs and associated biogeochemical processes. Table of KEGG genomes that have the lowest distance to each MAG. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.7103678
title: Additional file 1: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: MAG quality stats. Table of the percent completion, percent contamination, GC%, taxonomic lineage, and other genome statistics for each MAG. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.7103678.v1
title: Additional file 1: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: MAG quality stats. Table of the percent completion, percent contamination, GC%, taxonomic lineage, and other genome statistics for each MAG. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.7103669
title: Additional file 10: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Comparison of control bins to previously published MAGs. Statistics of the comparison between previously published MAGs and our assembly with metaWRAP, which shows a high degree of similarity, demonstrating that our method of assembly and binning is similar to previously published metagenomic analyses. (TSV 1Â kb)
DOI: 10.6084/m9.figshare.7103663
title: Additional file 9: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Table S4. Raw data from survival experiments. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7103669.v1
title: Additional file 10: of Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake

description: Comparison of control bins to previously published MAGs. Statistics of the comparison between previously published MAGs and our assembly with metaWRAP, which shows a high degree of similarity, demonstrating that our method of assembly and binning is similar to previously published metagenomic analyses. (TSV 1Â kb)
DOI: 10.6084/m9.figshare.7103660
title: Additional file 8: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Figure S5. Intergenerational alterations in gene expression induced by bacterial infection. Changes in gene expression in F1 s from infected P0s compared to F1s from P0s grown at 25 °C (left) and F1s from P0s grown at 25 °C compared to F1s from P0s grown at 20 °C (right) for: (A) genes previously identified as intergenerationally down-regulated when parents grown at 25 °C; (B) genes intergenerationally upregulated when parents grown at 25 °C but not up-regulated in the prde-1 mutant. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.7103663.v1
title: Additional file 9: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Table S4. Raw data from survival experiments. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.7103657
title: Additional file 7: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Table S3. Raw data from infection experiments. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.7103660.v1
title: Additional file 8: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Figure S5. Intergenerational alterations in gene expression induced by bacterial infection. Changes in gene expression in F1 s from infected P0s compared to F1s from P0s grown at 25 °C (left) and F1s from P0s grown at 25 °C compared to F1s from P0s grown at 20 °C (right) for: (A) genes previously identified as intergenerationally down-regulated when parents grown at 25 °C; (B) genes intergenerationally upregulated when parents grown at 25 °C but not up-regulated in the prde-1 mutant. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.7103657.v1
title: Additional file 7: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Table S3. Raw data from infection experiments. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.7103645
title: Additional file 6: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Figure S4. Limited duration of temperature-dependent intergenerational fitness effects. (A) Intergenerational Competition on E. coli at 25 °C between animals derived from (left) P0 animals grown at 25 °C marked with GFP and unmarked P0 animals grown at 20 °C; (right) unmarked P0 animals grown at 25 °C and P0 animals grown at 20 °C marked with GFP. Y-axis shows the percentage of unmarked animals grown after 2–3 generations (1 transfer, 5 biological replicates per condition), corrected for the effect of GFP at 25 °C. (B) Intergenerational competition on E. coli at 20 °C between animals derived from (left) unmarked P0 animals grown on E. coli at 20 °C and GFP-marked P0 animals grown at 25 °C (right) GFP-marked P0 animals grown at 20 °C and unmarked P0 animals grown at 25 °C. Y-axis shows the percentage of unmarked animals after 2–3 generations (1 transfer, 5 biological replicates per condition), corrected for the effect of GFP at 25 °C. (C) Multi-generational competition on E. coli at 25 °C between animals derived from (left) unmarked P0 animals grown at 20 °C and SNP-marked parents grown at 25 °C (right) SNP-marked P0 animals grown at 20 °C and unmarked parents grown at 25 °C. Y-axis shows the percentage of unmarked animals after 3–4 generations (2 transfers, 5 biological replicates per conditions), corrected for the effect of the SNP at 25 °C. (D) Multi-generational competition on E. coli at 20 °C between animals derived from (left) unmarked P0 animals grown on E. coli at 25 °C and SNP-marked P0 animals grown on S. marcescens at 25 °C (right) SNP-marked P0 animals grown on E. coli at 25 °C and unmarked P0 animals grown on S. marcescens at 25C. Y-axis shows the percentage of unmarked animals after 3–4 generations (2 transfers, 5 biological replicates per conditions), corrected for the effect of the SNP at 25 °C. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.7103645.v1
title: Additional file 6: of The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress

description: Figure S4. Limited duration of temperature-dependent intergenerational fitness effects. (A) Intergenerational Competition on E. coli at 25 °C between animals derived from (left) P0 animals grown at 25 °C marked with GFP and unmarked P0 animals grown at 20 °C; (right) unmarked P0 animals grown at 25 °C and P0 animals grown at 20 °C marked with GFP. Y-axis shows the percentage of unmarked animals grown after 2–3 generations (1 transfer, 5 biological replicates per condition), corrected for the effect of GFP at 25 °C. (B) Intergenerational competition on E. coli at 20 °C between animals derived from (left) unmarked P0 animals grown on E. coli at 20 °C and GFP-marked P0 animals grown at 25 °C (right) GFP-marked P0 animals grown at 20 °C and unmarked P0 animals grown at 25 °C. Y-axis shows the percentage of unmarked animals after 2–3 generations (1 transfer, 5 biological replicates per condition), corrected for the effect of GFP at 25 °C. (C) Multi-generational competition on E. coli at 25 °C between animals derived from (left) unmarked P0 animals grown at 20 °C and SNP-marked parents grown at 25 °C (right) SNP-marked P0 animals grown at 20 °C and unmarked parents grown at 25 °C. Y-axis shows the percentage of unmarked animals after 3–4 generations (2 transfers, 5 biological replicates per conditions), corrected for the effect of the SNP at 25 °C. (D) Multi-generational competition on E. coli at 20 °C between animals derived from (left) unmarked P0 animals grown on E. coli at 25 °C and SNP-marked P0 animals grown on S. marcescens at 25 °C (right) SNP-marked P0 animals grown on E. coli at 25 °C and unmarked P0 animals grown on S. marcescens at 25C. Y-axis shows the percentage of unmarked animals after 3–4 generations (2 transfers, 5 biological replicates per conditions), corrected for the effect of the SNP at 25 °C. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.7103561
title: MOESM2 of A digital elevation model for simulating the 1945 Makran tsunami in Karachi Harbour

description: Additional file 2: Table S1. Soundings digitized from the 1955 edition of Admiralty nautical chart (BA40), “Karáchi Harbour”. Table S2. Soundings digitized from the 1939 edition of Admiralty nautical chart (BA40), “Karáchi Harbour”.