cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8411771
title: Structural Condition Index

description: GeoTIFF representing an index of forest structural condition across the moist broadleaf biome of the humid tropics across South America, Africa and Asia.
DOI: 10.6084/m9.figshare.8411777.v1
title: Year Loss

description: GeoTIFF representing loss year for the moist broadleaf biome of the humid tropics in South America, Africa and Asia. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411756
title: Canopy Cover - Africa

description: GeoTIFF representing canopy cover for the moist broadleaf biome of the humid tropics in Africa. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411756.v1
title: Canopy Cover - Africa

description: GeoTIFF representing canopy cover for the moist broadleaf biome of the humid tropics in Africa. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411771.v1
title: Structural Condition Index

description: GeoTIFF representing an index of forest structural condition across the moist broadleaf biome of the humid tropics across South America, Africa and Asia.
DOI: 10.6084/m9.figshare.8411765.v1
title: Canopy Height - Africa

description: GeoTIFF representing canopy height for the moist broadleaf biome of the humid tropics in Africa. Derived from remotely sensed imagery, this layer is used as an input into the forest structural condition index
DOI: 10.6084/m9.figshare.8411687
title: Dengue Serotypes and Origins, Cordoba, Argentina 2009-2018

description: Number of known serotypes of dengue virus and origins of imported cases. Cordoba, Argentina 2009-2018.
DOI: 10.6084/m9.figshare.8411690
title: Zika Virus in Cordoba, Argentina 2016-2018

description: Weekly case counts of imported Zika virus in the city of Cordoba, Argentina. 2016-2018.
DOI: 10.6084/m9.figshare.8411687.v1
title: Dengue Serotypes and Origins, Cordoba, Argentina 2009-2018

description: Number of known serotypes of dengue virus and origins of imported cases. Cordoba, Argentina 2009-2018.
DOI: 10.6084/m9.figshare.8411690.v1
title: Zika Virus in Cordoba, Argentina 2016-2018

description: Weekly case counts of imported Zika virus in the city of Cordoba, Argentina. 2016-2018.
DOI: 10.6084/m9.figshare.8411681
title: Chikungunya in Cordoba, Argentina 2014-2018

description: Weekly counts of imported and autochthonous cases of chikungunya in Cordoba, Argentina 2014-2018.
DOI: 10.6084/m9.figshare.8411684
title: Dengue cases in Cordoba, Argentina 2009-2018.

description: Weekly counts of imported and autochthonous dengue cases in Cordoba, Argentina 2009-2018.
DOI: 10.6084/m9.figshare.8411684.v1
title: Dengue cases in Cordoba, Argentina 2009-2018.

description: Weekly counts of imported and autochthonous dengue cases in Cordoba, Argentina 2009-2018.
DOI: 10.6084/m9.figshare.8411681.v1
title: Chikungunya in Cordoba, Argentina 2014-2018

description: Weekly counts of imported and autochthonous cases of chikungunya in Cordoba, Argentina 2014-2018.
DOI: 10.6084/m9.figshare.8411591
title: Supplementary Table 2..doc

description: <b>cosinor analysis of glycometabolism gene and clock gene in the liver</b><br><b></b>
DOI: 10.6084/m9.figshare.8411591.v1
title: Supplementary Table 2..doc

description: <b>cosinor analysis of glycometabolism gene and clock gene in the liver</b><br><b></b>
DOI: 10.6084/m9.figshare.8411558
title: Supplementary Table 1..doc

description: Gene primers for real-time quantitative PCR
DOI: 10.6084/m9.figshare.8411558.v1
title: Supplementary Table 1..doc

description: Gene primers for real-time quantitative PCR
DOI: 10.6084/m9.figshare.8410604
title: Species Data

description: Species Metadata
DOI: 10.6084/m9.figshare.8410907
title: Climate Metadata

description: Climate Data
DOI: 10.6084/m9.figshare.8410493
title: Converting Data to Ascii format

description: Code
DOI: 10.6084/m9.figshare.8410907.v1
title: Climate Metadata

description: Climate Data
DOI: 10.6084/m9.figshare.8410493.v1
title: Converting Data to Ascii format

description: Code
DOI: 10.6084/m9.figshare.8410604.v1
title: Species Data

description: Species Metadata
DOI: 10.6084/m9.figshare.8408603
title: Convert2Ascii(howDrFordConverted1stTime).m

description: Code
DOI: 10.6084/m9.figshare.8408606
title: ExtractPRISM.m

description: Code
DOI: 10.6084/m9.figshare.8408603.v1
title: Convert2Ascii(howDrFordConverted1stTime).m

description: Code
DOI: 10.6084/m9.figshare.8408600
title: hargreavesPET.m

description: Code
DOI: 10.6084/m9.figshare.8408606.v1
title: ExtractPRISM.m

description: Code
DOI: 10.6084/m9.figshare.8408549
title: Ginsenoside analogs as possible BACE1 inhibitors

description: list of ginsenosides analogues as BACE1 inhibitors in treatment of AD.
DOI: 10.6084/m9.figshare.8408600.v1
title: hargreavesPET.m

description: Code
DOI: 10.6084/m9.figshare.8408549.v1
title: Ginsenoside analogs as possible BACE1 inhibitors

description: list of ginsenosides analogues as BACE1 inhibitors in treatment of AD.
DOI: 10.6084/m9.figshare.8398394
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8398394.v1
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8398394.v2
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8398058.v2
title: Diagonal Discriminant Analysis With Feature Selection for High-Dimensional Data

description: We introduce a new method of performing high-dimensional discriminant analysis (DA), which we call multiDA. Starting from multiclass diagonal DA classifiers which avoid the problem of high-dimensional covariance estimation we construct a hybrid model that seamlessly integrates feature selection components. Our feature selection component naturally simplifies to weights which are simple functions of likelihood ratio test statistics allowing natural comparisons with traditional hypothesis testing methods. We provide heuristic arguments suggesting desirable asymptotic properties of our algorithm with regard to feature selection. We compare our method with several other approaches, showing marked improvements in regard to prediction accuracy, interpretability of chosen features, and fast run time. We demonstrate such strengths of our model by showing strong classification performance on publicly available high-dimensional datasets, as well as through multiple simulation studies. We make an R package available implementing our approach. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.8398058.v1
title: Diagonal Discriminant Analysis with Feature Selection for High Dimensional Data

description: We introduce a new method of performing high dimensional discriminant analysis, which we call multiDA. Starting from multiclass diagonal discriminant analysis classifiers which avoid the problem of high dimensional covariance estimation we construct a hybrid model that seamlessly integrates feature selection components. Our feature selection component naturally simplifies to weights which are simple functions of likelihood ratio test statistics allowing natural comparisons with traditional hypothesis testing methods. We provide heuristic arguments suggesting desirable asymptotic properties of our algorithm with regards to feature selection. We compare our method with several other approaches, showing marked improvements in regard to prediction accuracy, interpretability of chosen features, and fast run time. We demonstrate such strengths of our model by showing strong classification performance on publicly available high dimensional datasets, as well as through multiple simulation studies. We make an R package available implementing our approach.
DOI: 10.6084/m9.figshare.8398394.v3
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8398394.v4
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8398394.v5
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8397977
title: Guiding Cardiopulmonary Resuscitation with Focused Echocardiography: A Report of Five Cases

description: <b>Background:</b> Focused transthoracic echocardiography has been used to determine etiologies of cardiac arrest and evaluate utility of continuing resuscitation after cardiac arrest. Few guidelines exist advising ultrasound timing within the advanced cardiac life support algorithm. Natural timing of echocardiography occurs during the pulse check, when views are unencumbered by stabilization equipment or vigorous movements. However, recent studies suggest that ultrasound performance during pulse checks prolongs the pause duration of cardiopulmonary resuscitation. Transesophageal echocardiography studies have demonstrated benefits in this regard, but there have been no transthoracic echocardiography studies assessing the physical performance of compressions during cardiopulmonary resuscitation. <b>Objective:</b> The purpose of this study was to describe cases where echocardiography performed at the beginning of the cardiac arrest algorithm offers actionable information to cardiopulmonary resuscitation itself without delaying provision of compressions. <b>Conclusion:</b> Providers using focused echocardiography to evaluate cardiac arrest patients should consider initiating scans at the start of compressions to identify the optimal location for compression delivery and to detect inadequate compressions. Subsequent visualization of full left ventricular compression may be seen after a location change, and combined with end tidal carbon dioxide values, gives indication for improved forward circulatory flow. Although it is not possible in all patients, doing so hastens provision of quality compressions that affect hemodynamic parameters without causing prolongations to the pulse check pause. Further research is needed to determine patient outcomes from both out-of-hospital and in-hospital cardiac arrest when cardiopulmonary resuscitation is visually guided by focused echocardiography.
DOI: 10.6084/m9.figshare.8397977.v2
title: Guiding Cardiopulmonary Resuscitation with Focused Echocardiography: A Report of Five Cases

description: <b>Background:</b> Focused transthoracic echocardiography has been used to determine etiologies of cardiac arrest and evaluate utility of continuing resuscitation after cardiac arrest. Few guidelines exist advising ultrasound timing within the advanced cardiac life support algorithm. Natural timing of echocardiography occurs during the pulse check, when views are unencumbered by stabilization equipment or vigorous movements. However, recent studies suggest that ultrasound performance during pulse checks prolongs the pause duration of cardiopulmonary resuscitation. Transesophageal echocardiography studies have demonstrated benefits in this regard, but there have been no transthoracic echocardiography studies assessing the physical performance of compressions during cardiopulmonary resuscitation. <b>Objective:</b> The purpose of this study was to describe cases where echocardiography performed at the beginning of the cardiac arrest algorithm offers actionable information to cardiopulmonary resuscitation itself without delaying provision of compressions. <b>Conclusion:</b> Providers using focused echocardiography to evaluate cardiac arrest patients should consider initiating scans at the start of compressions to identify the optimal location for compression delivery and to detect inadequate compressions. Subsequent visualization of full left ventricular compression may be seen after a location change, and combined with end tidal carbon dioxide values, gives indication for improved forward circulatory flow. Although it is not possible in all patients, doing so hastens provision of quality compressions that affect hemodynamic parameters without causing prolongations to the pulse check pause. Further research is needed to determine patient outcomes from both out-of-hospital and in-hospital cardiac arrest when cardiopulmonary resuscitation is visually guided by focused echocardiography.
DOI: 10.6084/m9.figshare.8398394.v6
title: Wabash River Basin USGS NHD HUC 12 polygon shapefile

description: Polygon shapefile of the Hydrologic Unit Code (HUC) Level 12 watershed boundaries from the USGS National Hydrography Dataset. Modified to work with the Future Water Indiana R Shiny Leaflet interactive map.
DOI: 10.6084/m9.figshare.8397908
title: Source Data for "Dynamic Modulation of Modal Coupling in Microelectromechanical Gyroscopic Ring Resonators"

description: This is a source data fileset for a work submitted to Nature Communications titled "Dynamic Modulation of Modal Coupling in Microelectromechanical Gyroscopic Ring Resonators".
DOI: 10.6084/m9.figshare.8397977.v1
title: Guiding Cardiopulmonary Resuscitation with Focused Echocardiography: A Report of Five Cases

description: <b>Background:</b> Focused transthoracic echocardiography has been used to determine etiologies of cardiac arrest and evaluate utility of continuing resuscitation after cardiac arrest. Few guidelines exist advising ultrasound timing within the advanced cardiac life support algorithm. Natural timing of echocardiography occurs during the pulse check, when views are unencumbered by stabilization equipment or vigorous movements. However, recent studies suggest that ultrasound performance during pulse checks prolongs the pause duration of cardiopulmonary resuscitation. Transesophageal echocardiography studies have demonstrated benefits in this regard, but there have been no transthoracic echocardiography studies assessing the physical performance of compressions during cardiopulmonary resuscitation. <b>Objective:</b> The purpose of this study was to describe cases where echocardiography performed at the beginning of the cardiac arrest algorithm offers actionable information to cardiopulmonary resuscitation itself without delaying provision of compressions. <b>Conclusion:</b> Providers using focused echocardiography to evaluate cardiac arrest patients should consider initiating scans at the start of compressions to identify the optimal location for compression delivery and to detect inadequate compressions. Subsequent visualization of full left ventricular compression may be seen after a location change, and combined with end tidal carbon dioxide values, gives indication for improved forward circulatory flow. Although it is not possible in all patients, doing so hastens provision of quality compressions that affect hemodynamic parameters without causing prolongations to the pulse check pause. Further research is needed to determine patient outcomes from both out-of-hospital and in-hospital cardiac arrest when cardiopulmonary resuscitation is visually guided by focused echocardiography.
DOI: 10.6084/m9.figshare.8397866
title: A group sequential test for ABR detection

description: <b>Objective:</b> To detect the auditory brainstem response (ABR) automatically using an innovative sequentially applied Hotelling’s <i>T</i> <sup>2</sup> test, with the overall goal of optimising test time whilst controlling the false-positive rate (FPR). <b>Design:</b> The stage-wise critical decision boundaries for accepting or rejecting the null hypothesis were found using a new approach called the Convolutional Group Sequential Test (CGST). Specificity, sensitivity, and test time were evaluated using simulations and subject recorded data. <b>Study sample:</b> Data consists of click-evoked ABR threshold series from 12 normal hearing adults, and recordings of EEG background activity from 17 normal hearing adults. <b>Results:</b> Reductions in <i>mean</i> test time of up to 40–45% were observed for the sequential test, relative to a conventional “single shot” test where the statistical test is applied to the data just once. To obtain these results, it will occasionally be necessary to run the test to a higher number of stimuli, i.e. the maximum test time needs to be increased. <b>Conclusions:</b> The CGST can be used to control the specificity of a sequentially applied ABR detection method. Doing so can reduce test time, relative to the “single shot” test, when considered across a cohort of test subjects.
DOI: 10.6084/m9.figshare.8397866.v2
title: A group sequential test for ABR detection

description: <b>Objective:</b> To detect the auditory brainstem response (ABR) automatically using an innovative sequentially applied Hotelling’s <i>T</i> <sup>2</sup> test, with the overall goal of optimising test time whilst controlling the false-positive rate (FPR). <b>Design:</b> The stage-wise critical decision boundaries for accepting or rejecting the null hypothesis were found using a new approach called the Convolutional Group Sequential Test (CGST). Specificity, sensitivity, and test time were evaluated using simulations and subject recorded data. <b>Study sample:</b> Data consists of click-evoked ABR threshold series from 12 normal hearing adults, and recordings of EEG background activity from 17 normal hearing adults. <b>Results:</b> Reductions in <i>mean</i> test time of up to 40–45% were observed for the sequential test, relative to a conventional “single shot” test where the statistical test is applied to the data just once. To obtain these results, it will occasionally be necessary to run the test to a higher number of stimuli, i.e. the maximum test time needs to be increased. <b>Conclusions:</b> The CGST can be used to control the specificity of a sequentially applied ABR detection method. Doing so can reduce test time, relative to the “single shot” test, when considered across a cohort of test subjects.
DOI: 10.6084/m9.figshare.8397926.v1
title: AMAR Products from ADEON Cruise EN615 raw data

description: ADEON AMAR data product.
DOI: 10.6084/m9.figshare.8397737
title: TVC paper - snow pits and trenches

description: Excel spreadsheets of TVC snow pits and trenches in 2013 & 2018. Snow measurements include:DensitySpecific Surface AreaTemperatureLayer Stratigraphy
DOI: 10.6084/m9.figshare.8397926.v2
title: ADEON Cruise EN615 AMAR L2+Products

description: ADEON Cruise EN615 AMAR L2+ data product.
DOI: 10.6084/m9.figshare.8397737.v2
title: TVC paper - snow pits and trenches

description: Excel spreadsheets of TVC snow pits and trenches in 2013 & 2018. Snow measurements include:DensitySpecific Surface AreaTemperatureLayer Stratigraphy
DOI: 10.6084/m9.figshare.8397737.v1
title: TVC paper - snow pits and trenches

description: Excel spreadsheets of TVC snow pits and trenches in 2013 & 2018. Snow measurements include:DensitySpecific Surface AreaTemperatureLayer Stratigraphy
DOI: 10.6084/m9.figshare.8397926.v3
title: ADEON EN615 AMAR L2+Products

description: ADEON Cruise EN615 AMAR L2+ data product. This data contains the Level 2 results computed from the ADEON passive acoustic monitoring data. Level 2 results are sound pressure levels (SPL), sound exposure levels (SEL) computed over different snapshot durations, and SPL/SEL statistics computed over different temporal analysis windows, as described in the ADEON Soundscape and Modelling Metadata Standard. The data is accompanied by folder containing 8 different readme files.
DOI: 10.6084/m9.figshare.8397635
title: Erophylla_sezekorni_Microsatellite_Alleles_MigrateFormat.txt

description: Microsatellite peak calls for Erophylla sezekorni, published in the Journal of Parasitology. <br>A FLY ON THE CAVE WALL: PARASITE GENETICS REVEAL FINE-SCALE DISPERSAL PATTERNS OF BATS<br>
DOI: 10.6084/m9.figshare.8397644
title: Trichobius_frequens_Microsatellite_Alleles_MigrateFormat.txt

description: Microsatellite peak calls for the bat fly Trichobius frequens. Results from this dataset were published in the Journal of Parasitology. <br>A FLY ON THE CAVE WALL: PARASITE GENETICS REVEAL FINE-SCALE DISPERSAL PATTERNS OF BATS<br>
DOI: 10.6084/m9.figshare.8397635.v1
title: Erophylla_sezekorni_Microsatellite_Alleles_MigrateFormat.txt

description: Microsatellite peak calls for Erophylla sezekorni, published in the Journal of Parasitology. <br>A FLY ON THE CAVE WALL: PARASITE GENETICS REVEAL FINE-SCALE DISPERSAL PATTERNS OF BATS<br>
DOI: 10.6084/m9.figshare.8397644.v1
title: Trichobius_frequens_Microsatellite_Alleles_MigrateFormat.txt

description: Microsatellite peak calls for the bat fly Trichobius frequens. Results from this dataset were published in the Journal of Parasitology. <br>A FLY ON THE CAVE WALL: PARASITE GENETICS REVEAL FINE-SCALE DISPERSAL PATTERNS OF BATS<br>
DOI: 10.6084/m9.figshare.8397599
title: Dataset for: iTRAQ-based proteomic and bioinformatic characterization of human mast cell upon different IAV (H1N1 and H5N1) infection

description: In our previous study, it was demonstrated that mast cell can support replication of Influenza A virus (IAV) and how this occurs is poorly understood. At present, using quantitative mass spectrometry, we analyzed proteome of human mast cells (HMCs) infected with different IAV strains at 12h post-infection (12 hpi). More 41 diﬀerentially expressed proteins (DEPs) of global HMCs caused by H5N1 (A/Chicken/Henan/1/04) virus than H1N1 (A/WSN/33) virus. Bioinformatic analyses confirmed that H1N1 significantly regulated the RNA degradation pathway via CNOT4 expressing highly while apoptosis could be suppressed by H5N1 virus down regulated by p53 signaling pathway with P≤0.05 at 12 hpi. HIF-1 signal pathway of HMCs was more susceptible to the infection of H5N1 than H1N1 virus.
DOI: 10.6084/m9.figshare.8397575
title: Cernansky Syromyatnikova Lacerta trilineata NHMW 26524-2

description: The CT data of <i>Lacerta trilineata </i>NHMW 26524-2 from Čerňanský and Syromyatnikova PLOS ONE. It can be open by winrar and volume graphic studio. <br>
DOI: 10.6084/m9.figshare.8397599.v1
title: Dataset for: iTRAQ-based proteomic and bioinformatic characterization of human mast cell upon different IAV (H1N1 and H5N1) infection

description: In our previous study, it was demonstrated that mast cell can support replication of Influenza A virus (IAV) and how this occurs is poorly understood. At present, using quantitative mass spectrometry, we analyzed proteome of human mast cells (HMCs) infected with different IAV strains at 12h post-infection (12 hpi). More 41 diﬀerentially expressed proteins (DEPs) of global HMCs caused by H5N1 (A/Chicken/Henan/1/04) virus than H1N1 (A/WSN/33) virus. Bioinformatic analyses confirmed that H1N1 significantly regulated the RNA degradation pathway via CNOT4 expressing highly while apoptosis could be suppressed by H5N1 virus down regulated by p53 signaling pathway with P≤0.05 at 12 hpi. HIF-1 signal pathway of HMCs was more susceptible to the infection of H5N1 than H1N1 virus.