cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p3fg9/1
title: Catton et al Demography Stacked April 12 2015

description: Demography data for Cynoglossum officinale and Hackelia micrantha on Mogulones crucifer release and nonrelease sites used in the Catton et al. (2016) publication in Ecosphere.
DOI: 10.5061/dryad.qj4h3/1
title: Bee community data frame

description: Data frame including the abundance of solitary bees sampled within experimental treatment plots.
DOI: 10.5061/dryad.qj4h3/2
title: Environmental data

description: Data frame containing the site identity, treatment type, number of traps successfully emptied per treatment plot (sampintensity), the logarithm of the sample intensity (logsampintensity) used as an offset variable in the analysis, the species richness of forbs within treatment plots and the species richness of ericaceous shrubs within treatment plots.
DOI: 10.5061/dryad.rm7cd/1
title: Ecol Evol Raw Data Mueller Mueller

description: Rawdata of all experiments carried out in the corresponding manuscript
DOI: 10.5061/dryad.03692/1
title: alignment_Schneider_et_al_2016_MolEcol_Dryad

description: DNA sequence alignment (in FASTA format) used for construction of phylogenetic trees. Includes data of four non-coding loci, namely the internal transcribed spacer region (ITS), which consists of two parts and includes the strongly conserved 5.8S rRNA region, the nuclear small ribosomal subunit gene (SSU), the nuclear large ribosomal subunit gene (LSU), and the mitochondrial small ribosomal subunit gene (mtSSU), and four protein-coding genes, namely DNA-directed RNA polymerase II subunit RPB1 (RPB1), DNA-directed RNA polymerase II subunit RPB2 (RPB2), DNA replication licensing factor MCM7 (MCM7), and translation elongation factor 1 alpha (EF1a).
DOI: 10.5061/dryad.03692/2
title: RAxML_MLtree_Schneider_et_al_2016_MolEcol_Dryad

description: A phylogenetic tree in Newick format constructed using RAxML 7.4.2 based on the alignment included in this data package.
DOI: 10.5061/dryad.03692/3
title: MrBayes_allcompat_consensus_Schneider_et_al_2016_MolEcol_Dryad

description: A consensus phylogenetic tree in Nexus format constructed using MrBayes 3.2.1 based on the alignment included in this data package.
DOI: 10.5061/dryad.03692/4
title: BEAST_MCC_run1_Schneider_et_al_2016_MolEcol_Dryad

description: A maximum clade credibility (MCC) phylogenetic tree in Nexus format constructed using BEAST 1.8.1 based on the alignment included in this data package.
DOI: 10.5061/dryad.03692/5
title: BEAST_MCC_run2_Schneider_et_al_2016_MolEcol_Dryad

description: A maximum clade credibility (MCC) phylogenetic tree in Nexus format constructed using BEAST 1.8.1 based on the alignment included in this data package.
DOI: 10.5061/dryad.03692/6
title: StarBEAST_MCC_run1_Schneider_et_al_2016_MolEcol_Dryad

description: A maximum clade credibility (MCC) phylogenetic species tree in Nexus format constructed using *BEAST 1.8.1 based on the alignment included in this data package.
DOI: 10.5061/dryad.03692/7
title: StarBEAST_MCC_run2_Schneider_et_al_2016_MolEcol_Dryad

description: A maximum clade credibility (MCC) phylogenetic species tree in Nexus format constructed using *BEAST 1.8.1 based on the alignment included in this data package.
DOI: 10.5061/dryad.12s8s/1
title: evolutionary metabolomics data

description: Content of 51 polar and non-polar primary metabolites from 37 genotypes of Triticum turgidum L. including wild emmer, emmer and durum wheat
DOI: 10.5061/dryad.20t9v/21
title: Bayes factors from Bayenv2 - all chromosomes

description: A Matlab file containing SNP coordinates for all 353276 SNPs and their associated Bayes factors (BFs) obtained by means of Bayenv2. Contains minimum BFs over 10 independent runs of Bayenv2, as well as median BFs that were used in the downstream analyses.
DOI: 10.5061/dryad.20t9v/22
title: Bayenv2 intermediate file - raw BFs

description: An intermediate Matlab file containing raw Bayes factors from Bayenv2.
DOI: 10.5061/dryad.20t9v/23
title: Demographic estimation data - simulated FST autosomes

description: A Matlab file containing FST estimated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs.
DOI: 10.5061/dryad.20t9v/24
title: Demographic estimation data - simulated FST chromosome X

description: A Matlab file containing FST estimated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains X chromosome SNPs.
DOI: 10.5061/dryad.20t9v/25
title: Demographic estimation data - simulated BFs autosomes

description: A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains autosomal SNPs.
DOI: 10.5061/dryad.20t9v/26
title: Demographic estimation data - simulated BFs chromosome X

description: A Matlab file containing Bayes factors calculated on simulated data from the demographic estimation analysis by means of Approximate Bayesian Computation. Contains X chromosome SNPs.
DOI: 10.5061/dryad.20t9v/27
title: Demographic estimation data - summarized (autosomes)

description: A Matlab file with summarized data from demographic estimation analysis by means of Approximate Bayesian Computation (autosomes).
DOI: 10.5061/dryad.20t9v/28
title: Ensembl gene IDs

description: A Matlab file containing Flybase (FBgn) gene IDs, their names and chromosomal locations. Retrieved from Ensembl.
DOI: 10.5061/dryad.256hn/23
title: Ghirsutum_yuc_15dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum var yucatanense fiber at 15 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.256hn/24
title: Ghirsutum_yuc_20dpa

description: Illumina HiSeq 2500 100-bp single-end RNA-seq from Gossypium hirsutum var yucatanense fiber at 20 days post anthesis, grown in greenhouse; format: fastq.gz
DOI: 10.5061/dryad.4t8c7/1
title: Lost at sea Rossi et al. dataset

description: In this excel files the data are organized in 5 sheets (1) contains the data behind the power spectrum of White Island (2) contains the mulloway fish auditory preference data (3) contains mulloway otoliths size (4) contains the water chemistry data recorded during the rearing period of mulloway in the lab (5) contains the water chemistry data recorded on the vents at White Island
DOI: 10.5061/dryad.567v8/1
title: Hybrid_Parent_Marker_Sequences

description: This zipped folder contains multiple fasta files that contain molecular marker sequence data for the hybrid parent used in our mapping cross.  Each fasta file contains the sequence data for all markers that grouped together on a single linkage group.  Marker genotypes/sequences provided here were produced using Stacks version 1.09.
DOI: 10.5061/dryad.567v8/2
title: YHD2_Parent_Marker_Sequences

description: This zipped folder contains multiple fasta files that contain molecular marker sequence data for the YHD2 (Bt Resistant) parent used in our mapping cross. Each fasta file contains the sequence data for all markers that grouped together on a single linkage group. Marker genotypes/sequences provided here were produced using Stacks version 1.09.
DOI: 10.5061/dryad.567v8/3
title: Marker_Position_File

description: This file provides the Stacks catalog number of each marker along with its linkage group (Chr) number and position (pos; given in cM) within each linkage group.  Markers 0, 1, and 2 represent the partial candidate gene sequences for ABCC2, HevCalp, and DesatI, respectively.
DOI: 10.5061/dryad.65d76/1
title: Experiment1

description: All data collected from the first fluctuating temperature experiment with Arabidopsis thaliana which included 36 flowering mutants and NILs in the Columbia and Landsberg genetic backgrounds. See README file for details.
DOI: 10.5061/dryad.65d76/2
title: Experiment2

description: All data collected from the second fluctuating temperature experiment with Arabidopsis thaliana which was designed to test if high temperatures could account for the flowering acceleration we observed in the FRIGIDA NIL in the Columbia background in Exp1. See README file for details.
DOI: 10.5061/dryad.65d76/3
title: Experiment3

description: All data collected from the third fluctuating temperature experiment with Arabidopsis thaliana which focused on 23 flowering mutants and NILs in the Columbia and Col FRI genetic backgrounds. See README file for details.
DOI: 10.5061/dryad.6n579/3
title: breeding propensity analysis data file
DOI: 10.5061/dryad.6n579/4
title: Clutch size and nest abandonment analysis datafile
DOI: 10.5061/dryad.6p2n6/1
title: de novo transcriptome assembly of dandelion leaf tissue

description: Illumina sequencing Trinity assembly
DOI: 10.5061/dryad.6p2n6/2
title: Field experiment raw count table

description: raw count of reads mapping the reference transcriptome using RSEM (semi-natural field experiment)
DOI: 10.5061/dryad.6p2n6/3
title: Greenhouse experiment raw count table

description: raw count of reads mapping the reference transcriptome using RSEM (greenhouse experiment)
DOI: 10.5061/dryad.8734c/10
title: FigS4_RawData

description: Figure S4. Radiation sensitivity of Cu assessed by collecting a sequential series of 5 XANES spectra from given regions in 3 different ‘S’-cells (panels A, B, C). Panel ASpectral Range 6099-6103 (n=5)Panel BSpectral Range 6085-89 (n=5)Panel CSpectral Range 6123-27 (n=5)The thin methacrylate-embedded sections were obtained from a woodlouse sampled at 02:00 hours. In each panel, the large down-pointing vertical arrow indicates that the top spectrum was collected first and the lowest spectrum last. Note that the small shoulder on the absorption edge at 8982.5 eV (broken arrows) is slightly eroded from the third acquired spectrum onwards (cf. Fig. 7).File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/11
title: FigS5_RawData

description: Figure S5. Radiation sensitivity of Zn assessed by collecting a sequential series of 5 XANES spectra from given regions in 2 different ‘S’-cells (panels A and B). Panel ASpectral Range 6142-46Panel BSpectral Range 6116-21The thin methacrylate-embedded sections were obtained from a woodlouse sampled at 0200 hours. In each panel, the large down-pointing vertical arrow indicates that the top spectrum was collected first and the lowest spectrum last. Note that the absorption edge peak at ~9670 eV (broken arrows) is slightly eroded from the 2nd acquisition onwards (A) and from the 4th onwards (B).File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/6
title: Fig7_RawData

description: Figure 7. Radiation sensitivity of Cu assessed by collecting a sequential series of 5 XANES spectra from given regions in 3 different ‘B’-cells (panels A, B, C). The thin methacrylate-embedded sections were obtained from a woodlouse sampled at 02:00 hours. In each panel, the large down-pointing vertical arrow indicates that the top spectrum was collected first and the lowest spectrum last. Note that the shoulder on the absorption edge at 8982.5 eV (broken arrows), whilst remaining visible, is progressively eroded from the third acquired spectrum onwards.Panel ASpectral Range 6110-14 (n=5)Panel BSpectral Range 6090-94 (n=5)Panel CSpectral Range 6133-37 (n=5)File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/7
title: Fig8_RawData

description: Figure 8. Radiation sensitivity of Fe assessed by collecting a sequential series of 5 XANES spectra from given regions in a ‘B’-cell (panel A) Spectral Range 6104-08 (n=5)‘S’-cell (panel B)Spectral Range 6128-32 (n=5)The thin methacrylate-embedded sections were obtained from a woodlouse sampled at 02:00 hours. In both panels, the large down-pointing vertical arrow indicates that the top spectrum was collected first and the lowest spectrum last. Note that successive spectra remain very similar.File type provided: XAS_dtc.dat  - deadtime corrected (DTC) XAS files; column format:Monochromator angle  :  energy : time per point  :  I0  : It;  Idrain :  raw fluorescence counts channels 1-9: summed raw fluorescence counts: DTC flu counts channels 1-9: summed DTC fluorescence counts
DOI: 10.5061/dryad.8734c/8
title: FigS2_RawData

description: Figure S2. µXRF maps of element distributions in unstained methacrylate-embedded thin mid-tubule sections of woodlouse hepatopancreas sampled at 02:00 hours (i.e. the beginning of ‘B’-cell restitution during darkness). A. Light micrograph of a transverse section. S5_sp_light1x10.tifB. Superimposed Cu, Fe and Zn µXRF maps of the section depicted in S1A; note the regular 1:1 distribution of ‘S’- (*) and ‘B’-cells (•) in the tubule wall. Prefix 5955C. Expanded view µXRF maps for the region delineated by a broken-lined rectangle in 2E; note the hallmarks of Cu/Zn-containing ‘S’-cell cytoplasm ‘under’ the basal aspect of the ‘B’-cell (dotted line), the co-distribution of Cu and Zn (light blue) as well as partitioning of Cu (green) and Zn (dark blue) in the ‘S’-cell, and possibly some Zn-containing focal regions in the ‘B’-cell (broken arrows).Prefix 5956File types included:tif - Image files (Light Micrographs).dat : map data showing the stage positions in mm and windowed fluorescence counts.  Column format:Horizontal  position ; vertical position; time per point (ms); I0; It; Idrain; mca file..edf file ESRF format file for program PyMCA containing the summed MCA files for each point in a map row by row. Binary data format.rgb file windowed detector counts for selected chemical elements of interest , column format:y index; x index; time;  i0  it  idrain; then elements as listed in first row.
DOI: 10.5061/dryad.8734c/9
title: FigS3_RawData

description: Figure S3. µXRF maps of element distributions in unstained methacrylate-embedded thin mid-tubule sections of woodlouse hepatopancreas sampled at 02:00 hours (i.e. the beginning of ‘B’-cell restitution during darkness). A. Light micrograph of a transverse section; note two spherical structures (arrows) in the lumen that might represent the newly shed apical cytoplasm (‘blebbing’) of two adjacent ‘B’-cells. S5_sp_light2.tifB. Superimposed Cu, Fe and Zn µXRF maps of the section depicted in S2A; note the Fe-rich ‘blebs’ in the lumen (solid arrows) corresponding with the structures labelled in S2A, as well as two more diffuse entities (broken arrows) possibly representing ‘older’ blebs that were not discernible in the micrograph.Sample Prefix 6076File types included:tif - Image files (Light Micrographs).dat : map data showing the stage positions in mm and windowed fluorescence counts.  Column format:Horizontal  position ; vertical position; time per point (ms); I0; It; Idrain; mca file..edf file ESRF format file for program PyMCA containing the summed MCA files for each point in a map row by row. Binary data format.rgb file windowed detector counts for selected chemical elements of interest , column format:y index; x index; time;  i0  it  idrain; then elements as listed in first row.
DOI: 10.5061/dryad.f862c/72
title: M618E24-Data7

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/73
title: M618E24-Data8

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/74
title: M618E24-Data9

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/75
title: M618E24-Data10

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/76
title: M618E24-Data11

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/77
title: M618E24-Data12

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/78
title: M625E0-Control C3D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/79
title: M625E0-Control C4D

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.f862c/80
title: M625E0-Control DAF

description: Flow cytometry raw data. Flow cytometry files (.fcs) generated using a LSRII flow cytometer.
DOI: 10.5061/dryad.fd986/1
title: Database S1

description: This file contains mean (log-transformed) species trait measurements and ecological guild scores for 524 Passerines within Manu National park with associated elevation range limits (from Walker et al 2006).
DOI: 10.5061/dryad.gp16s/1
title: Matrix used for the tutorial
DOI: 10.5061/dryad.gp16s/2
title: Ages file for the tutorial data set
DOI: 10.5061/dryad.gp16s/3
title: R code for the tutorial
DOI: 10.5061/dryad.gp16s/4
title: R code used for the simulations
DOI: 10.5061/dryad.h4j6c/1
title: Phenotypic and genotypic caracterisation of the samples

description: The data file includes a full list of specimen with collection places, sexes and species, a genotype spreadsheet with the microsatellites alleles and several spreadsheets with the data quantifying the different modalities of the phenotype (details below). Each specimen is identified by a unique id in the genotype/phenotype data. Please refer to the specimen information for its caracteristics.  For all:
FW = forewing
HW = hindwing
v = ventral
d = dorsal

* Specimen information:
All collection details on the specimen used in the study (cf supplementary information)

* Genotype (microsatellites):
Each line is a specimen. Each column is a microsatellite locus.
000000 are missing data.

* Shape data (morphometrics):
Each line is a specimen. The 14 (HW) or 15 (FW) columns corresponds to 14 or 15 landmarks with 2 coordinates (X, Y).

* Pattern data (Colour pattern modelling):
Each line is a specimen. The columns are coordinates along the principal components.

* Shape data (outline):
Each line is a specimen. The columns are coordinates along the principal components.

* Colour data (spectrometry):
Spreadsheets called "Red, Yellow or Black"
The first column is the wavelength. 
Each column corresponds to the reflectance of the given colour (in % of the white reference) for an individual. Measurements are averaged over two spectra (one measured on the right wing, the other on the left wing - or twice on the same wing if the other wing was damaged).
DOI: 10.5061/dryad.k6c82/4
title: CO1_phylogeny

description: A .zip file containing the CO1 matrix and phylogeny.
DOI: 10.5061/dryad.k6c82/5
title: Aphonopelma morphology images

description: A .zip file of all morphological images used in the revision to define species.
DOI: 10.5061/dryad.k6c82/6
title: Appendix 1

description: Compressed file (.zip) containing locality data of Aphonopelma specimens
DOI: 10.5061/dryad.k6c82/7
title: Appendix 2

description: Compressed files (.zip) containing Aphonopelma boxplot and PCA morphospace data
DOI: 10.5061/dryad.k6c82/8
title: Appendix 3

description: Compressed file (.zip) containing simple R scripts for analyzing Aphonopelma morphological space
DOI: 10.5061/dryad.k6c82/9
title: Appendix 4

description: Compressed files (.zip) containing supplemental morphology figures
DOI: 10.5061/dryad.m0j89/1
title: JAV-00830.R2

description: Data base including MHC-I alleles and Leucocytozoon and Haemoproteus infections. Both intensity of infection and infection status are included
DOI: 10.5061/dryad.mg5rs/1
title: Morphological measurements on Vincetoxicum

description: Table (.csv format) with data on 17 morphological characters studied on hybridization between Vincetoxicum atratum, V. japonicum and hybrid populations in Japan.
DOI: 10.5061/dryad.mg5rs/2
title: Microsatellite--Vincetoxicum

description: Microsatellite dataset (10 markers) given here as a Genepop input file.
DOI: 10.5061/dryad.n0v50/1
title: Figure S3 - COI gene tree

description: Maximum clade credibility gene tree from MrBayes analysis of COI data. Support values are posterior probabilities.
DOI: 10.5061/dryad.q7qv2/2
title: complete data

description: All data used for analysis is contained in 'completedata.csv'. This file consists of 3 columns. The first 'x' is the natural log transformed value of the inoculum density. The second, 'y', is the binary score of population establishment (1- established; 0- failed to establish). The last column, 'treat', identifies the environmental treatment (1- high carbon, 2- low carbon, 3- low carbon with predation).
DOI: 10.5061/dryad.r7pc5/1
title: F_L001_R1.fastq

description: Paired-end Illumina seqeuncing output fastq file with forward reads
DOI: 10.5061/dryad.r7pc5/2
title: F_L001_R2.fastq

description: Paired-end Illumina seqeuncing output fastq file with reverse reads
DOI: 10.5061/dryad.s1660/1
title: Data on cross-taxon congruence from the ecology literature

description: The file contains four tabs: 'articles' is a list of articles investigated to identify suitable data; 'sites' contains information on the spatial characteristics of the selected survey locations; 'congruence' contains the raw data on cross-taxon congruence extracted from each article; and 'taxa' gives taxonomic information for each group listed in the dataset.
DOI: 10.5061/dryad.s5q88/1
title: Primer_list_S1

description: Primer list
DOI: 10.5061/dryad.s5q88/2
title: GeneInfo_S2

description: Table with statistics and general information for each gene surveyed in the SCN.
DOI: 10.5061/dryad.s5q88/3
title: LincInfo_S3

description: Table with statistics and general information for each multi-exonic lincRNA expressed in the SCN.
DOI: 10.5061/dryad.s5q88/4
title: NovelExons_S4

description: Table with coordinates and additional information for identified novel exons expressed in the SCN.
DOI: 10.5061/dryad.s5q88/5
title: LincRNA_3187

description: A GTF file of the 3187 multi-exonic lincRNA expressed in the SCN.
DOI: 10.5061/dryad.td453/1
title: Average site values

description: This file contains average values (SD) for each of the 33 sites used in the study. The variables are latitude, longitude, elevation, tarsus length, wing length, body mass, sperm head length, sperm midpiece length, sperm tail length, sperm total length, CVbm, WW1 allele frequency, WW2 allele frequency, and length of the Clock gene.
DOI: 10.5061/dryad.1mr70/1
title: Database
DOI: 10.5061/dryad.1rs12/1
title: FerreAncillaryFaseb

description: Ancillary Data 1 to 4 of the Manuscript by Cécile A; Ferré et al.
DOI: 10.5061/dryad.20t9v/29
title: Ensembl gene ontology annotation

description: A Matlab file containing Flybase (FBgn) gene IDs, their gene ontology annotation and chromosomal locations. Retrieved from Ensembl.
DOI: 10.5061/dryad.20t9v/30
title: ABC rejection data - autosomes

description: A Matlab file containing the Approximate Bayesian Computation rejection matrix (autosomes).
DOI: 10.5061/dryad.20t9v/31
title: ABC rejection data - X chromosome

description: A Matlab file containing the Approximate Bayesian Computation rejection matrix (X chromosome).
DOI: 10.5061/dryad.20t9v/32
title: Genome annotations script

description: A script to generate a Matlab file with genome annotations.
DOI: 10.5061/dryad.20t9v/33
title: Reformat FUNC GO results script

description: A script to reformat results from the FUNC GO analysis.