cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12774641.v1
title: COVID 19 MTurk Baseline Data

description: Data were collected via MTurk to assess COVID-19 perceptions of seriousness and risk, as well as adherence to containment guidelines.
DOI: 10.6084/m9.figshare.12774554
title: Oliveira fms et al 2020.pdf

description: Human ascariasis is considered the most prevalent neglected tropical disease in the world. The immune response in human ascariasis is characterized by a Th2 polarization, as well as a mixed Th2 / Th17 response present in the pathogenesis of experimental larval ascariasis. Proinflammatory cytokines are essential to induce nitric oxide synthesis via inducible nitric oxide enzyme expression. Several studies have shown the participation of nitric oxide in helminth infections such as <i>Brugia malayi</i>, <i>Toxocara canis</i>, <i>Schistosoma mansoni</i>, <i>Echinococcus granulosus</i> and <i>Strongyloides venezuelensis, </i>however its role in ascariasis remains unknown. To elucidade the role of nitric oxide in ascariasis, C57BL/6 mice iNOS knockout were evaluated during acute infection of ascaris to report the possible participation of nitric oxide on parasitological and immunopathological aspects. We reported nitric oxide as a crucial inflammatory molecule to control the parasite establishment and development of host immune response to infection in the liver.
DOI: 10.6084/m9.figshare.12774554.v1
title: Oliveira fms et al 2020.pdf

description: Human ascariasis is considered the most prevalent neglected tropical disease in the world. The immune response in human ascariasis is characterized by a Th2 polarization, as well as a mixed Th2 / Th17 response present in the pathogenesis of experimental larval ascariasis. Proinflammatory cytokines are essential to induce nitric oxide synthesis via inducible nitric oxide enzyme expression. Several studies have shown the participation of nitric oxide in helminth infections such as <i>Brugia malayi</i>, <i>Toxocara canis</i>, <i>Schistosoma mansoni</i>, <i>Echinococcus granulosus</i> and <i>Strongyloides venezuelensis, </i>however its role in ascariasis remains unknown. To elucidade the role of nitric oxide in ascariasis, C57BL/6 mice iNOS knockout were evaluated during acute infection of ascaris to report the possible participation of nitric oxide on parasitological and immunopathological aspects. We reported nitric oxide as a crucial inflammatory molecule to control the parasite establishment and development of host immune response to infection in the liver.
DOI: 10.6084/m9.figshare.12774551
title: Testando

description: blaqweqw
DOI: 10.6084/m9.figshare.12774623.v1
title: Overviews on Berry-Keating conjecture, Hilbert-P\'{o}lya conjecture and Riemann hypothesis

description: Newly motivated by the G-dynamics as a part of the quantum covariant Hamiltonian system (QCHS), we try to use it to untangle the complex affairs of the three closely related conjectures: Riemann hypothesis (RH), Berry-Keating conjecture (BKC) and Hilbert-P\'{o}lya conjecture (HPC). Truly, a suitable solution $\zeta \left( 1/2+\sqrt{-1}{{w}^{\left( q \right)}} \right)=0$ holds for RH, it means that such an unbounded self-adjoint operator indeed exists, and it's the G-dynamics $\hat{w}^{(cl)}$ as a strong candidate for such self-adjoint operator which described the geometric frequency, exactly.
DOI: 10.6084/m9.figshare.12774551.v1
title: Testando

description: blaqweqw
DOI: 10.6084/m9.figshare.12774527
title: RNAseq_ATCC 17978_Summary Data

description: RNAseq Summary data for AZM treated ATCC 17978 in ca-MHB and RPMI+
DOI: 10.6084/m9.figshare.12774527.v1
title: RNAseq_ATCC 17978_Summary Data

description: RNAseq Summary data for AZM treated ATCC 17978 in ca-MHB and RPMI+
DOI: 10.6084/m9.figshare.12774623.v2
title: Overviews on Berry-Keating conjecture, Hilbert-P\'{o}lya conjecture and Riemann hypothesis

description: Newly motivated by the G-dynamics as a part of the quantum covariant Hamiltonian system (QCHS), we try to use it to untangle the complex affairs of the three closely related conjectures: Riemann hypothesis (RH), Berry-Keating conjecture (BKC) and Hilbert-P\'{o}lya conjecture (HPC). Truly, a suitable solution $\zeta \left( 1/2+\sqrt{-1}{{w}^{\left( q \right)}} \right)=0$ holds for RH, it means that such an unbounded self-adjoint operator indeed exists, and it's the G-dynamics $\hat{w}^{(cl)}$ as a strong candidate for such self-adjoint operator which described the geometric frequency, exactly.
DOI: 10.6084/m9.figshare.12771629
title: MIC90_ATCC 17978

description: AZM MIC90 optical density readings in ca-MHB and RPMI+
DOI: 10.6084/m9.figshare.12771629.v1
title: MIC90_ATCC 17978

description: AZM MIC90 optical density readings in ca-MHB and RPMI+
DOI: 10.6084/m9.figshare.12771428
title: nsf_data.mat

description: Evoked heat pain fMRI task, provided as beta series (aka "single trial") contrast images of heat vs. baseline along with subjective pain ratings<br>
DOI: 10.6084/m9.figshare.12771428.v1
title: nsf_data.mat

description: Evoked heat pain fMRI task, provided as beta series (aka "single trial") contrast images of heat vs. baseline along with subjective pain ratings<br>
DOI: 10.6084/m9.figshare.12771287
title: sah_platelets.sas7bdat

description: Dataset of the study on platelet response to SAH.
DOI: 10.6084/m9.figshare.12771260
title: Data and Code for: High mitochondrial mutation rates in Silene are associated with nuclear-mediated changes in mitochondrial physiology.

description: Data and code to generate the results presented in the published paper. The code was drafted under R version 4.0.<br>
DOI: 10.6084/m9.figshare.12771287.v1
title: sah_platelets.sas7bdat

description: Dataset of the study on platelet response to SAH.
DOI: 10.6084/m9.figshare.12771116
title: Source Data for publication on Increasing Ocean Stratification over the Past Half Century

description: Source data and figures (png and pdf format) for Figures 1-4, Extended Data Figures 6 and 10.<br> All of the source data including ocean stratification (squared buoyancy frequency, <i>N<sup>2</sup></i>), potential density, temperature and salinity gridded products, <i>N<sup>2</sup> </i>timeseries and trends in most of the figures are available in our website: <b>http://152.226.119.60/cheng/</b>.<br> For further data and codes used to generate other figures in the scripts, please contact <b>chenglijing@mail.iap.ac.cn</b> or <b>liguancheng15@mails.ucas.ac.cn</b>.<br>
DOI: 10.6084/m9.figshare.12771260.v1
title: Data and Code for: High mitochondrial mutation rates in Silene are associated with nuclear-mediated changes in mitochondrial physiology.

description: Data and code to generate the results presented in the published paper. The code was drafted under R version 4.0.<br>
DOI: 10.6084/m9.figshare.12771023
title: Dissecting the paternal founders of Mundari (Austroasiatic) speakers associated with the language dispersal in South Asia

description: This dataset contains the Sequencing trace files done for the various downstream markers of M95-O2a haplogroup. The details of each samples have been mentioned in the attached excel file.
DOI: 10.6084/m9.figshare.12771002
title: Next Generation Sequencing Results of Cave Mn-deposits

description: Next Generation Sequencing Results of Cave Mn-deposits processed by QIIME2.
DOI: 10.6084/m9.figshare.12771002.v1
title: Next Generation Sequencing Results of Cave Mn-deposits

description: Next Generation Sequencing Results of Cave Mn-deposits processed by QIIME2.
DOI: 10.6084/m9.figshare.12770885
title: Simulation of the co-deregulated pathways between acute lymphoblastic leukemia and rhabdomyosarcoma

description: Acute lymphoblastic leukemia (ALL) and rhabdomyosarcoma (RMS) are two distinct childhood malignancies, which nevertheless, bear co-deregulated genes, responsible for the control of proliferation and metabolism. Through systems biology approaches and mathematical modeling, one can study the deregulated signaling pathways and manage the complexity that results from dynamic, non-linear space-time interactions. Here, we investigated the co-deregulated genes between two cell lines of childhood ALL (CCRF-CEM) and RMS (TE-671), and simulated the signal transduction pathways that they share, focusing on genes participating in metabolic activities and energy conversion. We found that the simulated molecules exhibited a log-like pattern with oscillations, with respect to time, and they were correlated between them at all-time points. Plotting of the transformed polar coordinates of each molecule with respect to time, showed that each molecule manifested quasi-turbulent dynamics. The simulation of the molecules with respect to time revealed time-dependent trajectories manifesting a turbulence-like structure. The chromosomal-related expression also manifested quasi-turbulent patterns. We further modeled these graphs using helical structures producing regressions. Overall, we report a new methodology that could help us understand the mechanics of the common metabolism-related co-deregulated genes, between ALL and RBS. Our data reveal that they manifest specific expression patterns, which can be modelled using Systems Biology approaches and mathematical modelling tools. Such tactics could be considered a valuable tool towards the understanding of therapeutic targets in childhood neoplasms.
DOI: 10.6084/m9.figshare.12770900
title: IJRR2020.zip

description: Dataset
DOI: 10.6084/m9.figshare.12770900.v1
title: IJRR2020.zip

description: Dataset
DOI: 10.6084/m9.figshare.12770642
title: Supplementary Material for: Analyzing the Role of DICER1 Germline Variations in Papillary Thyroid Carcinoma

description: <b><i>Introduction:</i></b> DICER1 is a member of RNase III family that has a pivotal role in the biogenesis of microRNAs, being important for normal development. Dysregulation of DICER1 has been described in different human tumours; however, there is insufficient data on the risk of thyroid cancer in the presence of germline DICER1 variants, particularly when focusing on the background of papillary thyroid carcinoma (PTC). For this purpose, we ascertained the presence of DICER1 variants in 502 (PTC) cases available from The Cancer Genome Atlas (TCGA) research network in a well-characterized pathological context. <b><i>Material and Methods:</i></b> in this study we analyzed 502 samples from 502 patients, described as PTC in the TCGA database. Tumour diagnoses were re-evaluated by 2 pathologists (S.C. and M.S.-S.) on slides available from the database, and clinicopathological and demographic data was examined. Data concerning germline and sporadic DICER1 gene variants as well as frequent mutations in the genes involved in thyroid carcinogenesis (e.g., <i>RAS</i> and <i>BRAF</i>V600E) was retrieved from the database. <b><i>Results and Discussion:</i></b> We report 1 new germline possibly pathogenic variant, besides 15 others already been identified in ClinVar. We found that the DICER1-positive PTC group more frequently includes PTC variants, namely the oncocytic, follicular, and aggressive (hobnail variant of PTC) variants. A previous association of DICER1 had been demonstrated, mainly with the follicular variant of PTC and follicular thyroid carcinomas. Tumours harbouring germline DICER1 mutations were more frequently “bilateral” and “encapsulated.” The frequent association of DICER1 germline variants with other mutations associated with thyroid cancer can reflect an haploinsufficiency tumour suppressor gene function of DICER1, as suggested from the study of animal models.
DOI: 10.6084/m9.figshare.12770651
title: Supplementary Material for: Prostate Cancer Characteristics in the US Preventive Services Task Force Grade D Era: A Single-Center Study and Meta-Analysis

description: <b><i>Background:</i></b> In May 2012, the US Preventive Services Task Force assigned prostate-specific antigen-based screening a grade D recommendation, advising against screening at any age. Our objective was to compare prostate cancer characteristics pre- and post-recommendation with an adjusted analysis of our data and a pooled analysis including other primary data sources. <b><i>Methods:</i></b> We identified all incident prostate cancer diagnoses at our institution from 2007 to 2016. Multivariable log binomial regression was used to determine the relative risk (RR) of metastasis at diagnosis, ≥Gleason Group 4, and high D’Amico risk disease pre- versus post-recommendation. The meta-analysis included primary data studies evaluating these outcomes. <b><i>Results:</i></b> At our institution, 287 (44.6%) and 224 (48.8%) patients were diagnosed in the pre- and post-cohorts. The RR of metastatic disease at diagnosis did not differ between groups (<i>p</i> = 0.224), nor did the risk of high D’Amico category disease (<i>p</i> = 0.089). The risk of ≥Gleason Group 4 was 1.58 times higher post-recommendation (<i>p</i> = 0.007). The pooled risk of ≥Gleason Group 4 disease was 1.5 (<i>p</i> &lt; 0.001) post-recommendation and was 1.29 (<i>p</i> = 0.006) for high D’Amico risk disease. <b><i>Conclusions:</i></b> While the number of metastatic cases did not differ after the recommendation, the risk of high-grade cancers increased at both a local and aggregated level.
DOI: 10.6084/m9.figshare.12770660
title: Supplementary Material for: Twin-Twin Transfusion Syndrome Complicated by Proximate Placental Cord Insertion Sites: Endoscopic Clip-Assisted Laser Occlusion

description: <b><i>Introduction:</i></b> Severe twin-twin transfusion syndrome (TTTS) with a large vascular communication between proximate placental cord insertion sites is a therapeutic dilemma because laser ablation may cause thermal injury to the cord roots and subsequent fetal demise. <b><i>Case Presentation:</i></b> Stage IV TTTS with placental cord insertion sites 1.3 cm apart and with an intervening large arterio-arterial (AA) anastomosis presented for treatment. The application of endoclips onto the large AA anastomosis between the cord roots allowed for successful laser occlusion using minimal energy. Both the donor and recipient twins were alive and well at 6 months of age. <b><i>Conclusion:</i></b> Endoscopic clip-assisted laser occlusion of a placental vessel is technically feasible and may be a useful therapeutic option in select cases.
DOI: 10.6084/m9.figshare.12770651.v1
title: Supplementary Material for: Prostate Cancer Characteristics in the US Preventive Services Task Force Grade D Era: A Single-Center Study and Meta-Analysis

description: <b><i>Background:</i></b> In May 2012, the US Preventive Services Task Force assigned prostate-specific antigen-based screening a grade D recommendation, advising against screening at any age. Our objective was to compare prostate cancer characteristics pre- and post-recommendation with an adjusted analysis of our data and a pooled analysis including other primary data sources. <b><i>Methods:</i></b> We identified all incident prostate cancer diagnoses at our institution from 2007 to 2016. Multivariable log binomial regression was used to determine the relative risk (RR) of metastasis at diagnosis, ≥Gleason Group 4, and high D’Amico risk disease pre- versus post-recommendation. The meta-analysis included primary data studies evaluating these outcomes. <b><i>Results:</i></b> At our institution, 287 (44.6%) and 224 (48.8%) patients were diagnosed in the pre- and post-cohorts. The RR of metastatic disease at diagnosis did not differ between groups (<i>p</i> = 0.224), nor did the risk of high D’Amico category disease (<i>p</i> = 0.089). The risk of ≥Gleason Group 4 was 1.58 times higher post-recommendation (<i>p</i> = 0.007). The pooled risk of ≥Gleason Group 4 disease was 1.5 (<i>p</i> &lt; 0.001) post-recommendation and was 1.29 (<i>p</i> = 0.006) for high D’Amico risk disease. <b><i>Conclusions:</i></b> While the number of metastatic cases did not differ after the recommendation, the risk of high-grade cancers increased at both a local and aggregated level.
DOI: 10.6084/m9.figshare.12770513
title: Supplemental data for the article "What they do in the shadows: examining the far-right networks on Telegram"

description: The archive contains supplementary data for the article "What they do in the shadows: examining the far-right networks on Telegram" (Urman & Katz, 2020)<br>
DOI: 10.6084/m9.figshare.12770513.v1
title: Supplemental data for the article "What they do in the shadows: examining the far-right networks on Telegram"

description: The archive contains supplementary data for the article "What they do in the shadows: examining the far-right networks on Telegram" (Urman & Katz, 2020)<br>
DOI: 10.6084/m9.figshare.12770366
title: Source Reconstructed Data for Large-scale Dynamics of Perceptual Decision Information across Human Cortex

description: This dataset contains source reconstructed data for "Large-scale Dynamics of Perceptual Decision Information across Human Cortex". Due to their size some .tar.gz had to be split into two parts. These files end in "aa" and "ab", they need to be merged before they can be decompressed:<br> <br> $ cat S12*gza* &gt; S12-source-reconstructions.tar.gz<br><br>Each archive contains files for stimulus and response locked epochs and for high (&gt;=10Hz, "F") and low (&lt;10 Hz, "LF") frequency TFR decompositions. Furthermore, each session is spread over a number of files that contain 100 trials each. Files from one epoch type can be safely concatenated in pandas.<br><br>Individual files can be read by using `pandas.read_hdf`. This will return a table that contains individual ROIs as columns and a multi-index that clearly labels each data point. <br><br>Specifically, the index contains a trial identifier ('trial' -&gt; confusingly labeled 'hash' in behavioral data), a time identifier ('time', seconds relative to time lock), an identifier for the TFR settings ('est_key') and a frequency identifier ('est_val').<br><br>Last tested with pandas 0.24.2.
DOI: 10.6084/m9.figshare.12770201
title: Metaheuristic parameter tuning dateset

description: All thee metaheuristic algorithms (Ant Colony Optimization, Evolutionary Strategy, Imperialist Competitive Algorithm) contain multiple numerical parameters, that can be tuned to increase the efficiency of the search. These parameters are summarised below. Candidate configurations are generated by dividing each parameter into discrete sets - Full Fractional Design (FDD) approach. This creates a total of 12,000 candidate configurations for ACO, 1000 for ES and 5760 for ICA, a total of 18,760 across all algorithms.<b>ACO: </b>Parallel instances; Number of ants; Relative pheromone strength; relative heuristic information strength; exploitation to exploration ratio; cunning rate<b>ES:</b> Population size; mutation rate; number of local iterations; swap ratio<b>ICA:</b> Number of countries, imperialist ratio; number of local iterations; assimilation rate; average power of empire's colonies; independence rate<br><br>Dataset divided into three worksheets, one for each algorithm. For each configuration 10 run fitnesses are provided as well as average. With NaN representing values that did not finish within 60 seconds.
DOI: 10.26180/5f2be9fe62b43
title: Chirp Encoded data for publication

description: This contains data to reproduce the results published in :<br>Pawar K, Chen Z, Zhang J, Shah NJ, Egan GF. Application of compressed sensing using chirp encoded 3D GRE and MPRAGE sequences. International Journal of Imaging Systems and Technology. 2020 Feb 3.<br>
DOI: 10.6084/m9.figshare.12770093
title: Tex-Q expert rating (original data)

description: SPSS-Datasheet of the raw Data of the expert-ratings informing the development of the TEX-Q questionnaire.<br>
DOI: 10.6084/m9.figshare.12770153
title: State of Open Data 2020 - early snapshot in light of COVID-19

description: As part of Springer Nature and Digital Science's 'State of Open Data'survey ran annually, we included some questions to look at how the COVID-19 pandemic was having an impact on open data practices. The data attached is an early snapshot of the insight provided by research authors on their attitudes and practices towards data sharing.<br>The survey went live on 24th May 2020 and an early scrape of the data was made on 18th June 2020. The total number of complete responses in this time was 3,436 which were analysed to discuss the COVID-19 impact.
DOI: 10.6084/m9.figshare.12770093.v1
title: Tex-Q expert rating (original data)

description: SPSS-Datasheet of the raw Data of the expert-ratings informing the development of the TEX-Q questionnaire.<br>
DOI: 10.6084/m9.figshare.12770033
title: CF-1.pdf

description: Effect of naringenin on cell proliferation, cell clone and cell cycle phase distribution.
DOI: 10.6084/m9.figshare.12770018
title: Data used to estimate population growth and phenotypic plasticity from Leung et al (2020) Ecology Letters

description: This data accompanies our 2020 publication in <i>Ecology Letters</i> titled, "<i>Reduced phenotypic plasticity evolves in less predictable environments</i>".<br>If you use these datasets, please cite the paper as well as this dataset. Please see the paper for a detailed description of the data and analysis.<br>"data1_Pop_size_All.txt": <b><br></b><b>Dataset 1. Population size during the plasticity assay.</b> For each population, their origin (evolved lines or isogenic populations), strain (A for CCAP 19/12 and C for CCAP 19/15), expected and actual autocorrelation (rho), salinity, day post transfer and population size (cells x ml<sup>-1</sup>) are given.<br>"data2_Calibrating_beads.txt": <b><br></b><b>Dataset 2. Calibrating beads.</b> Flow cytometry parameter (FSC, SSC and Red_B) values for beads in three different salinity.<br>"data3_Raw_Data_Morpho.txt": <b><br></b><b>Dataset 3. Cell morphology raw data. </b>Flow cytometry parameters (FSC, SSC and Red_B) were given for up 150 cells for each populations. Their origin (evolved lines or isogenic populations), strain (A for CCAP 19/12 and C for CCAP 19/15), expected and actual autocorrelation (rho), salinity, and day post transfer are specified. <br>
DOI: 10.6084/m9.figshare.12770033.v1
title: CF-1.pdf

description: Effect of naringenin on cell proliferation, cell clone and cell cycle phase distribution.
DOI: 10.6084/m9.figshare.12769928
title: Previously unpublished non-aggregated data for RM calibrations accompanying Magozzi et al. submitted to MEE

description: Table S3. Previously unpublished non-aggregated <i>δ</i><sup>2</sup>H data for RM calibrations. Where RMs were calibrated to non-matrix-matched RMs, the names of these are reported in the <i>Reference scale</i> field. Note: values for n-C24 and n-C28 standards were determined with dual inlet and continuous flow methods and equaled -35.8 and -248.7‰, respectively.<br>Table S4. Previously unpublished non-aggregated <i>δ</i><sup>18</sup>O data for RM calibrations.
DOI: 10.6084/m9.figshare.12769928.v1
title: Previously unpublished non-aggregated data for RM calibrations accompanying Magozzi et al. submitted to MEE

description: Table S3. Previously unpublished non-aggregated <i>δ</i><sup>2</sup>H data for RM calibrations. Where RMs were calibrated to non-matrix-matched RMs, the names of these are reported in the <i>Reference scale</i> field. Note: values for n-C24 and n-C28 standards were determined with dual inlet and continuous flow methods and equaled -35.8 and -248.7‰, respectively.<br>Table S4. Previously unpublished non-aggregated <i>δ</i><sup>18</sup>O data for RM calibrations.
DOI: 10.6084/m9.figshare.12769856
title: 1. Dataset 1 Raw data from a survey mental health status and quality of life among Cambodian migrant workers in Thailand.xlsx

description: This study was approved by the Khon Kaen University (KKU) committee for research ethics in human research (Reference no. HE602361), Khon Kaen, Thailand.
DOI: 10.6084/m9.figshare.12769856.v1
title: 1. Dataset 1 Raw data from a survey mental health status and quality of life among Cambodian migrant workers in Thailand.xlsx

description: This study was approved by the Khon Kaen University (KKU) committee for research ethics in human research (Reference no. HE602361), Khon Kaen, Thailand.