cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1176490.09fu
title: SH1176490.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1176491.09fu
title: SH1176491.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.16435828.v1
title: Additional file 3 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 3: Supplementary Tables-Tables S2. ATAC-seq statistics and QC.
DOI: 10.6084/m9.figshare.16435825.v1
title: Additional file 2 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 2: Supplementary Tables-Tables S1. ATAC-seq peak data.
DOI: 10.6084/m9.figshare.16435828
title: Additional file 3 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 3: Supplementary Tables-Tables S2. ATAC-seq statistics and QC.
DOI: 10.6084/m9.figshare.22721555.v1
title: Additional file 2 of Cross-talks between gut microbiota and tobacco smoking: a two-sample Mendelian randomization study

description: Additional file 2: Table S4. All results of causal links between gut microbiome and smoking phenotypes. Table S5. Instrumental variables used in our study for univariate MR and multivariable MR, respectively.
DOI: 10.6084/m9.figshare.16435839
title: Additional file 5 of Incidence and severity of G6PI-induced arthritis are not increased in genetically distinct mouse strains upon aging

description: Additional file 5: Supplement-Tables. Ages of analyzed mice. Every age of any mouse analyzed is shown in the tables.
DOI: 10.6084/m9.figshare.16435825
title: Additional file 2 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 2: Supplementary Tables-Tables S1. ATAC-seq peak data.
DOI: 10.6084/m9.figshare.21154493
title: Raw data used for statistical analyses in this study. from Rising floor and dropping ceiling: organ heterogeneity in response to cold acclimation of the largest extant amphibian

description: Supplementary data 2: Table S1: Food intake. Table S2: Body traits. Table S3: Raw data of preferred temperature. Table S4: Organ weight. Table S5: Statistics of Polymerase reads (Whole length transcriptome). Table S6: Statistics of ORI (Whole length transcriptome). Table S7: Statistics of transcripts (Whole length transcriptome). Table S8: Table presenting the expression levels of transcripts. Table S9: Table presenting the metabolite abundance. Table S10: Detailed information for catabolic genes in Figure 3. Table S11: Detailed information for KEGG enrichment analyses.
DOI: 10.5281/zenodo.10624995
title: The drivers of plant turnover change across spatial scales in the Azores - dataset associated

description:  Dataset of publicly available biodiversity information of seed plant records from the Azores. It contains 159,411 georeferenced occurrences result of the compilation, cleaning, enrichment and validation from the Global Biodiversity Information Facility (GBIF 2019; ATLANTIS initiative in the Azores). This database is associated to the paper Leo et al. (2024) The drivers of plant turnover change across spatial scales in the Azores. 

Format: csv file with semicolom field separators and UTF-8 encoding

Detail description of each of the fields contained in the dataset.



gbifID (numeric): unique identifier of record

bioportal_name (character): name of the taxon (Genus + species) as included in the Azores bioportal (https://azoresbioportal.uac.pt/)

family (character): taxonomic family of the taxon as included in the Azores bioportal (https://azoresbioportal.uac.pt/)

biportal_status (character): origin of the taxon as included in the Azores bioportal (native or endemic, https://azoresbioportal.uac.pt/)

Cat.Schaefer (character): dispersal syndrome of the taxon as detailed in the Supplementary Material of Schaefer et al., 2011, Ecology Letters, DOI 10.1111/j.1461-0248.2011.01600.x

year (numeric): year in which the record was sampled

Lon (numeric): Longitude

Lat (numeric): Latitude

island (character): name of the island in which the record is located

Type100 (character): Habitat type corresponding to the cell in which the record is located (Seminatural pasture, SemPast; Naturalized vegetation, NatVeg; or Natural Forest, NatFor)

plot.id (character): unique identifier per each cell, corresponds to Lon + Lat pasted together
DOI: 10.5281/zenodo.10624996
title: The drivers of plant turnover change across spatial scales in the Azores - dataset associated

description:  Dataset of publicly available biodiversity information of seed plant records from the Azores. It contains 159,411 georeferenced occurrences result of the compilation, cleaning, enrichment and validation from the Global Biodiversity Information Facility (GBIF 2019; ATLANTIS initiative in the Azores). This database is associated to the paper Leo et al. (2024) The drivers of plant turnover change across spatial scales in the Azores. 

Format: csv file with semicolom field separators and UTF-8 encoding

Detail description of each of the fields contained in the dataset.



gbifID (numeric): unique identifier of record

bioportal_name (character): name of the taxon (Genus + species) as included in the Azores bioportal (https://azoresbioportal.uac.pt/)

family (character): taxonomic family of the taxon as included in the Azores bioportal (https://azoresbioportal.uac.pt/)

biportal_status (character): origin of the taxon as included in the Azores bioportal (native or endemic, https://azoresbioportal.uac.pt/)

Cat.Schaefer (character): dispersal syndrome of the taxon as detailed in the Supplementary Material of Schaefer et al., 2011, Ecology Letters, DOI 10.1111/j.1461-0248.2011.01600.x

year (numeric): year in which the record was sampled

Lon (numeric): Longitude

Lat (numeric): Latitude

island (character): name of the island in which the record is located

Type100 (character): Habitat type corresponding to the cell in which the record is located (Seminatural pasture, SemPast; Naturalized vegetation, NatVeg; or Natural Forest, NatFor)

plot.id (character): unique identifier per each cell, corresponds to Lon + Lat pasted together
DOI: 10.6084/m9.figshare.14338850
title: CqsA/LuxS-HapR Quorum sensing circuit modulates type VI secretion system VﬂT6SS2 in <i>Vibrio fluvialis</i>

description: <i>Vibrio fluvialis</i> is an emerging enteric pathogen of increasing public health threat. Two quorum sensing (QS) systems, VfqI-VfqR and CqsA/LuxS-HapR, and two type VI secretion systems (T6SSs), VflT6SS1 and VflT6SS2, have been identified in <i>V. fluvialis</i>. Whether there exists any correlation between the two systems is unclear. In this study, we found that CqsA/LuxS-HapR circuit regulator LuxO represses while HapR activates VﬂT6SS2. The effect of LuxO is more pronounced at low cell density and is HapR-dependent. Deletion of <i>hapR</i> abolished Hcp expression and alleviated antibacterial virulence. However, these effects were rescued by HapR-expressing plasmid. Reporter fusion analyses showed that HapR is required for the promoter activities of VﬂT6SS2. Sequence inspection of the major cluster promoter revealed two potential Motif 1 HapR binding sites, and their bindings to HapR were confirmed by both electrophoretic mobility shift assay (EMSA) and DNase I footprinting assay. Meanwhile, two single Motif 2 sites were identified in <i>tssD</i>2_a (<i>hcp</i>A) and <i>tssD</i>2_b (<i>hcp</i>B) promoter regions of the orphan cluster which are less conserved and displayed lower affinities to HapR. Together, our study demonstrated that CqsA/LuxS-HapR QS manipulate VflT6SS2 in <i>V. fluvialis</i>, and this finding will enhance our understanding of possible crosstalk between T6SS and QS in microbes.
DOI: 10.6084/m9.figshare.20105551.v1
title: Additional file 3 of Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness

description: Additional file 3: High-throughput sequencing for miRNA expression analysis in A549 cells between NC and sh-circEPB41 group.
DOI: 10.6084/m9.figshare.22721437
title: Additional file 1 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 1. Supplementary table 1. Clinical characteristics of the BLCA patients used in this study.
DOI: 10.6084/m9.figshare.22721443
title: Additional file 3 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 3. Supplementary table 3. Differentially expressed apoptosis related genes between tumor and normal tissue inTCGA-BLCA dataset.
DOI: 10.6084/m9.figshare.22721452.v1
title: Additional file 6 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 6. Supplementary table 6. List of 13 ARGs phenotype-related prognostic genes used in this study in IMvigor210cohort.
DOI: 10.6084/m9.figshare.20105454.v1
title: Additional file 8 of Identification, characterization and functional analysis of gonadal long noncoding RNAs in a protogynous hermaphroditic teleost fish, the ricefield eel (Monopterus albus)

description: Additional file 8: Dataset S4. KEGG pathways with significant differences among different developmental stages.
DOI: 10.6084/m9.figshare.20105457.v1
title: Additional file 9 of Identification, characterization and functional analysis of gonadal long noncoding RNAs in a protogynous hermaphroditic teleost fish, the ricefield eel (Monopterus albus)

description: Additional file 9: Dataset S5. DE-lncRNAs and their cis-target genes.
DOI: 10.6084/m9.figshare.16435840.v1
title: Additional file 7 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 7: Supplementary Tables -Tables S6. Differential expression analysis of whole proteome and phosphoproteome data.
DOI: 10.6084/m9.figshare.16435831.v1
title: Additional file 4 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 4: Supplementary Tables-Tables S3. DMR profiles.
DOI: 10.6084/m9.figshare.16435837
title: Additional file 6 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 6: Supplementary Table-Tables S5. MAGeCK analysis of CRISPR screen.
DOI: 10.18112/openneuro.ds003396.v1.0.0
title: changepoint helicopter
DOI: 10.5281/zenodo.4285706
title: Mansiri pottery QEMSCAN

description: Code and tif file data for QEMSCAN of Mansiri pottery. The tif files from QEMSCAN are in Maps_July_2016 folder. Fuji ImageJ macros for segmenting and obtaining mineral size and angles from the tif files are in Macros_Fuji The resulting .csv files from the Fuji ImageJ macros are in the directionality2 folder. The R code is directionality2s.R and requires the .csv files in the directionality2 folder structure.
DOI: 10.5281/zenodo.4285705
title: Mansiri pottery QEMSCAN

description: Code and tif file data for QEMSCAN of Mansiri pottery. The tif files from QEMSCAN are in Maps_July_2016 folder. Fuji ImageJ macros for segmenting and obtaining mineral size and angles from the tif files are in Macros_Fuji The resulting .csv files from the Fuji ImageJ macros are in the directionality2 folder. The R code is directionality2s.R and requires the .csv files in the directionality2 folder structure.
DOI: 10.25403/upresearchdata.12527414
title: Reproductive events and respective faecal androgen metabolite concentrations in captive male roan antelope (Hippotragus equinus)

description: The data are values of FAM concentrations measured in males, frequencies of behaviours recorded in males and environmental data from the study site namely rainfall, temperature and photoperiod.
DOI: 10.25403/upresearchdata.12527414.v2
title: Reproductive events and respective faecal androgen metabolite concentrations in captive male roan antelope (Hippotragus equinus)

description: The data are values of FAM concentrations measured in males, frequencies of behaviours recorded in males and environmental data from the study site namely rainfall, temperature and photoperiod.
DOI: 10.25403/upresearchdata.12527414.v1
title: Reproductive events and respective faecal androgen metabolite concentrations in captive male roan antelope (Hippotragus equinus)

description: The data are values of FAM concentrations measured in males, frequencies of behaviours recorded in males and environmental data from the study site namely rainfall, temperature and photoperiod.
DOI: 10.6084/m9.figshare.9205373.v1
title: Consultations Interactions Coding Scheme: Predictive validity with session-by-session outcome and sudden gains

description: Early interaction-style and –type can affect outcomes in cognitive behavioural therapy (CBT) for anxiety disorders. However, it is unclear specifically what interactions are helpful or hindering in CBT for severe health anxiety (SHA). This study aimed to identify interaction-styles and types that predict session-by-session outcomes and sudden gains in CBT for SHA. Each interaction in the first and second sessions of 49 recipients of CBT for SHA was categorised and rated on the basis of patient activation: an individual’s confidence and perceived ability to manage their own health. Multilevel modelling was used to assess early interactions’ predictive validity with session-by-session self-reported wellbeing. The 11 participants experiencing sudden gains had each interaction in the session directly prior to the gain similarly categorised and rated. The results were then compared to ratings of the preceding session. The greater the proportion of first and second sessions taken up with problem description interactions the smaller the improvement in wellbeing over treatment course. Furthermore, there was a significant reduction in problem description interactions at sessions directly prior to sudden gains, as compared to preceding control sessions. Problem descriptions are needed early in CBT for SHA, but they can reduce effectiveness if they dominate initial discussions.
DOI: 10.25375/uct.12408845
title: Analysis of ethanol production from xylose using Pichia stipitis in microaerobic conditions through experimental observations and kinetic modelling

description: Matlab scripts supporting journal article: Analysis of ethanol production from xylose using Pichia stipitis in microaerobic conditions through experimental observations and kinetic modelling
DOI: 10.25375/uct.12408845.v1
title: Analysis of ethanol production from xylose using Pichia stipitis in microaerobic conditions through experimental observations and kinetic modelling

description: Matlab scripts supporting journal article: Analysis of ethanol production from xylose using Pichia stipitis in microaerobic conditions through experimental observations and kinetic modelling
DOI: 10.6084/m9.figshare.9205373
title: Consultations Interactions Coding Scheme: Predictive validity with session-by-session outcome and sudden gains

description: Early interaction-style and –type can affect outcomes in cognitive behavioural therapy (CBT) for anxiety disorders. However, it is unclear specifically what interactions are helpful or hindering in CBT for severe health anxiety (SHA). This study aimed to identify interaction-styles and types that predict session-by-session outcomes and sudden gains in CBT for SHA. Each interaction in the first and second sessions of 49 recipients of CBT for SHA was categorised and rated on the basis of patient activation: an individual’s confidence and perceived ability to manage their own health. Multilevel modelling was used to assess early interactions’ predictive validity with session-by-session self-reported wellbeing. The 11 participants experiencing sudden gains had each interaction in the session directly prior to the gain similarly categorised and rated. The results were then compared to ratings of the preceding session. The greater the proportion of first and second sessions taken up with problem description interactions the smaller the improvement in wellbeing over treatment course. Furthermore, there was a significant reduction in problem description interactions at sessions directly prior to sudden gains, as compared to preceding control sessions. Problem descriptions are needed early in CBT for SHA, but they can reduce effectiveness if they dominate initial discussions.
DOI: 10.6084/m9.figshare.9205373.v3
title: Consultations Interactions Coding Scheme: Predictive validity with session-by-session outcome and sudden gains

description: Early interaction-style and –type can affect outcomes in cognitive behavioural therapy (CBT) for anxiety disorders. However, it is unclear specifically what interactions are helpful or hindering in CBT for severe health anxiety (SHA). This study aimed to identify interaction-styles and types that predict session-by-session outcomes and sudden gains in CBT for SHA. Each interaction in the first and second sessions of 49 recipients of CBT for SHA was categorised and rated on the basis of patient activation: an individual’s confidence and perceived ability to manage their own health. Multilevel modelling was used to assess early interactions’ predictive validity with session-by-session self-reported wellbeing. The 11 participants experiencing sudden gains had each interaction in the session directly prior to the gain similarly categorised and rated. The results were then compared to ratings of the preceding session. The greater the proportion of first and second sessions taken up with problem description interactions the smaller the improvement in wellbeing over treatment course. Furthermore, there was a significant reduction in problem description interactions at sessions directly prior to sudden gains, as compared to preceding control sessions. Problem descriptions are needed early in CBT for SHA, but they can reduce effectiveness if they dominate initial discussions.
DOI: 10.6084/m9.figshare.9205373.v2
title: Consultations Interactions Coding Scheme: Predictive validity with session-by-session outcome and sudden gains

description: Early interaction-style and –type can affect outcomes in cognitive behavioural therapy (CBT) for anxiety disorders. However, it is unclear specifically what interactions are helpful or hindering in CBT for severe health anxiety (SHA). This study aimed to identify interaction-styles and types that predict session-by-session outcomes and sudden gains in CBT for SHA. Each interaction in the first and second sessions of 49 recipients of CBT for SHA was categorised and rated on the basis of patient activation: an individual’s confidence and perceived ability to manage their own health. Multilevel modelling was used to assess early interactions’ predictive validity with session-by-session self-reported wellbeing. The 11 participants experiencing sudden gains had each interaction in the session directly prior to the gain similarly categorised and rated. The results were then compared to ratings of the preceding session. The greater the proportion of first and second sessions taken up with problem description interactions the smaller the improvement in wellbeing over treatment course. Furthermore, there was a significant reduction in problem description interactions at sessions directly prior to sudden gains, as compared to preceding control sessions. Problem descriptions are needed early in CBT for SHA, but they can reduce effectiveness if they dominate initial discussions.
DOI: 10.17632/rvkmsmpgpc.1
title: Data for: Uncovering process domains in large rivers: patterns and drivers of benthic habitat heterogeneity in two North American riverscapes

description: Raw data used to produce all figures and run analyses in manuscipt.
DOI: 10.17632/hgsvwg6tm8.1
title: Data for: Short-term oil production global optimization with operational constraints: A comparative study of nonlinear and piecewise linear formulations

description: These research data include the value of the parameters estimated for the equation model of the gas lift performance curves for each well at each wellhead pressure as well as the numerical results of the executed optimizations.
DOI: 10.6084/m9.figshare.13272839
title: Supplementary Material for: Spontaneous Erosion of Retained Bone Chip into Anal Canal Following Progressive Perineal Urethroplasty with Inferior Pubectomy: Lessons Learnt!

description: We present a never before reported delayed complication of progressive perineal urethroplasty with inferior pubectomy in a young male, where retained bone chip spontaneously erodes through anal canal. Our case cautions urologists doing inferior pubectomy for pelvic fracture urethral distraction defect to make sure that no loose bony fragment is left in the operative field. We also emphasize to make sure to nibble the sharp bony margins of the cut pubic bone after inferior pubectomy so that it will not impinge onto the anterior wall of rectum eliminating the risk of delayed perforation of rectum or anal canal.
DOI: 10.25430/researchdata.cab.unipd.it.00000401
title: serum + salivary LDSST

description: We measured at the same time serum and salivary cortisol, at baseline and 30 minutes after LDSST, in a cohort of patients with suspected central adrenal insufficiency.
DOI: 10.21227/yd99-9924
title: Non Linear 6.66 kVA Solar Optimizer

description: This dataset is in support of my original research paper " 6.66kVA Solar Optimizer " submitted to "IEEE Transactions on Energy Conversion". (https://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=60). Paper is under review.This is not connected to the grid. The other related dataset " " (https://dx.doi.org/10.21227/v7s8-pk56 ), where this will be connected to the inverter which in turn will be connected to grid.Though few similar kind papers are there, this paper is original and different from them as evident from the abstract and the transaction paper , and is based on the actual submitted project for funding. ( project didn't got any funding ; though from self finances, submission was acceptable !)