cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p5hqbzkvx
title: k-mer matrix Aegilops tauschii diversity panel (Open wild wheat consortium phase II) Part 1/3

description: Wild wheat relatives of bread wheat represent genetic diversity that can
 be used for wheat crop improvement. We generated a k-mer presence/absence
 matrix of over 920 accessions of the wild wheat Aegilops tauschii, the
 donor of the bread wheat D genome. This dataset was generated under the
 aegis of Phase II of the Open Wild Wheat Consortium
 (www.openwildwheat.org).
description: The full methods are available in the related publication.
description: # *k*-mer matrix Aegilops tauschii diversity panel (Open Wild Wheat
 Consortium Phase II) PART 1/3
 [https://doi.org/10.5061/dryad.p5hqbzkvx](https://doi.org/10.5061/dryad.p5hqbzkvx) ## Description of the data and file structure *k*-mer presence/absence matrix for the *Aegilops tauschii* diversity panel of over 920 accessions, including genetically redundant accessions. **Resequencing of the *Ae. tauschii* accessions:** We generated short-read whole genome sequencing data for 350 *Ae. tauschii *accessions.  PCR-free paired-end libraries were constructed and sequenced on an Illumina Novaseq 6000 instrument, yielding a median 8.3-fold coverage per sample (ranging from 5.87 to 16.86-fold). ***k*****-mer matrix generation**. We developed and implemented an optimised *k*-mer matrix workflow to generate a presence/absence *k*-mer matrix for large diversity panels (https://github.com/githubcbrc/KGWASMatrix). We counted *k*-mers (k = 51) in raw sequencing data for 350 accessions generated in this study, 306 accessions published by Gaurav et al. (2022), 275 accessions published by Zhou et al. (2021) and 24 accessions by Zhao et al. (2023). Accessions with less than 5-fold sequencing coverage were discarded to avoid affecting the *k*-mer count. *k*-mers were filtered by a minimum occurrence of six across accessions and a maximum occurrence of (N-6), being N the total number of accessions. Detailed information about this *k*-mer matrix is found in the related pre-print by Cavalet-Giorsa, Gonzalez-Munoz and Athiyannan *et al*. (2023) ([https://doi.org/10.1101/2023.11.29.568958](https://doi.org/10.1101/2023.11.29.568958)). The full *k*-mer matrix has a total size of ~729G and has been divided into 25 gzipped files. The full *k*-mer matrix is tab-delimited in which the first column contains 10,078,115,665 *k*-mers and the remaining columns show the presence (1) or absence (0) across the accessions that are listed in order in the *matrix_acc945_samples_list.txt* file. This dataset contains the first 9 gzipped files of the full *k*-mer matrix, as follow: matrix_acc945_samples_list.txt : ordered list of Aegilops tauschii accession IDs as contained in the matrix 0_m.tsv.gz 1_m.tsv.gz 2_m.tsv.gz 3_m.tsv.gz 4_m.tsv.gz 5_m.tsv.gz 6_m.tsv.gz 7_m.tsv.gz 8_m.tsv.gz The second and third parts of the *k*-mer matrix are available in additional related DRYAD datasets: doi:10.5061/dryad.wpzgmsbvm doi:10.5061/dryad.wm37pvmvd
DOI: 10.5281/zenodo.15800034
title: DISK processed datasets and models

description: This data repository accompanies the publication "Deep Imputation of Skeleton Data (DISK) for behavioral science". It contains a tutorial (slides in a pdf format), processed datasets and already trained DISK network instances.
DOI: 10.5281/zenodo.18405201
title: DISK processed datasets and models

description: This data repository accompanies the publication "Deep Imputation of Skeleton Data (DISK) for behavioral science". It contains a tutorial (slides in a pdf format), processed datasets and already trained DISK network instances.
DOI: 10.5061/dryad.d51c5b09c
title: Bark and ambrosia beetles on Mt. Wilhelm, Papua New Guinea

description: Global warming is expected to shift the distribution ranges of many
 species towards higher latitudes and altitudes. This will rewire
 plant-herbivore food webs as new combinations of herbivore species
 encounter novel host plants. We investigated the effects of a simulated
 altitudinal shift in a herbivore-host community of bark and ambrosia
 beetles on fig trees in a tropical mountain forest on Mt. Wilhelm, Papua
 New Guinea. We reared beetles from wood baits cut from five local Ficus
 species in their natural altitudinal ranges, between 200 – 1700 masl.
 Further, we transplanted baits from three of these tree species 500 m
 below the limits of their natural distribution range, to simulate a mean
 temperature increase of 2.7°C. Beetle species richness declined, and their
 species composition changed with increasing elevation. Furthermore, while
 altitude explained a large proportion of variance in beetle composition,
 host tree species was more important for bark beetles than ambrosia
 beetles. Beetle communities that assembled on the transplanted baits were
 similar in diversity and host specificity to those on the fig trees native
 to the same elevation, but also contained a number of unique species.
 Overall, these results indicate that saproxylic beetles in this tropical
 forest are highly resilient and flexible to the potential effects of
 climate change.
description: # Bark and Ambrosia Beetle Data
 The dataset contains the
 bark and ambrosia beetle species that were reared from wood baits of 5
 different *Ficus* species along an altitudinal tropical forest gradient on
 Mt. Wilhelm, Papua New Guinea. ## Description of the data and file
 structure The data consists of an Excel file containing a single table
 with a species-abundance list of saproxylic beetles reared from wood baits
 of five different *Ficus* tree species. Rearing took place along an
 elevational tropical forest gradient at altitudes of 200, 700, 1200 and
 1700m. Additionally baits from two tree species were transplanted below
 the natural distribution range of their species. Data rows represent
 beetle species and are sorted alphabetically with an additional column
 describing their feeding guild (“ambrosia beetle”; “bark beetle”). Data
 columns represent the wood baits of five tree species at four different
 altitudes with two replicates each (“_1”; “_2”), except in one case where
 there are three. Transplanted baits are marked with a “_T”. ##
 Sharing/Access information Data was derived from following sources:
 Beetles were reared from wood baits of *Ficus* trees and sorted to
 morphospecies by para-taxonomists using available literature (Hulcr et al.
 2013).   Hulcr, J., & Cognato, A.I. (2013). Xyleborini of New Guinea,
 a taxonomic monograph (coleoptera: curculionidae: scolytinae). Vol. 33.
 *Entomological Society of America*. ## Code/Software NA
DOI: 10.5061/dryad.4f4qrfjk3
title: Sapflow and stomatal conductance data in 3 savanna tree species

description: This dataset includes both sap flow and stomatal conductance data for 3
 woody savanna species (11 individuals of Colophospermum mopane, and each 9
 of both Senegalia mellifera and Catophractes alexandri). Each data point
 contains information on a browsing level that has been manually applied to
 an individual plant plus information on environmental conditions.
description: Data were collected in a nature reserve in the Kunene region,
 Namibia. Sap flow measurements followed the thermal heat dissipation
 method established by Granier (1985, 1987). To prevent any NTG-related
 bias in sap flow estimates, we applied the cyclic heat dissipation method
 after Lubczynski et al. (2012). Raw data was logged every 30 seconds and
 processed data provided sap flow densities with a 30-minute resolution.
 Stomatal Conductance was measured with a Decagon Devices Leaf Porometer on
 the bottom side of the leaves (abaxial). Climatic and soil moisture data
 were obtained from a local weather station.
description: # Sapflow and stomatal conductance data in 3 savanna tree species This
 dataset contains sap flow and stomatal conductance data accompanied by
 information on a browsing level and environmental conditions such as
 climatic factors and soil moisture. Gradual browsing levels have been
 applied manually in a controlled experiment in a nature reserve in
 Namibia. Trees were protected by a fenced exclosure. ## Description of the
 data and file structure Data are stored in a csv file. Sap flow data
 include: 1\. A timestamp in the YYYY-MM-DD HH-MM-SS format 2\. Tree ID 3\.
 Browsing Intensity in % 4\. Sap flow density in g/cm² 0.5 h 5\. The
 scientific species name 6\. Vapor Pressure Deficit VPD in kPa 7\. Soil
 moisture content in 50 cm depth in % under a tree 8\. Soil moisture
 content in 10 cm depth in % under a tree 9\. Solar radiation in µmol/ m² s
 10\. Information whether the data point was taken before or after browsing
 Missing values are indicated by 'NA' Stomatal conductance data
 include: 1\. A timestamp in the YYYY-MM-DD HH-MM-SS format 2\. Stomatal
 conductance in mmol/ m² s 3\. Tree_ID 4\. Vapor Pressure Deficit VPD in
 kPa 5\. Solar radiation in µmol/ m² s 6\. Browsing Intensity in % 7\. The
 scientific species name Missing values are indicated by 'NA'
DOI: 10.15468/dl.qdffjp
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Isbrueckerichthys calvus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 86 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024943-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/fef4ju
title: Replication Data for: Racially Disparate Policy Responses to Mass Shootings

description: This is the replication data for Racially Disparate Policy Responses to Mass Shootings, accept to Political Research Quarterly in 2023.
DOI: 10.7910/dvn/li77ap
title: Addressing Economic Constraints of Technology Adoption for Postharvest Practices and Rice Seed Storage in Bangladesh

description: This repository contains the raw data of Baseline and Endline surveys/interventions of the study "Addressing Economic Constraints of Technology Adoption for Postharvest Practices and Rice Seed Storage in Bangladesh". For details, see https://www.socialscienceregistry.org/trials/5035

The data collection and project are supported by the Feed the Future Innovation
Lab for the Reduction of Post-Harvest Loss (PHLIL) through the United State
Agency for International Development (USAID) Cooperative Agreement AID-OAAL-
14-00004.
DOI: 10.7910/dvn/vz7ly1
title: Battleground Poll no. 57 - May 2015 - dataset ID 14750

description: Data associated with The Battleground Poll between the years 1993 and 2017.
description: SPSS, null
DOI: 10.7910/dvn/vob36n
title: Auditing Cambridge Streets for Equity
title: Origins, People Commemorated, Race, Gender, Landownership, Harvard Affiliation

description: A dataset consisting of the names of streets in Cambridge, the person they are named after, their race, gender, clergy, Harvard affiliation and landowning status, as well as historical material about the street.
DOI: 10.7910/dvn/28548
title: rat resting-state fMRI sample

description: sample data for "Effects of Low Doses of Pioglitazone on Resting-State Functional Connectivity in Conscious Rat Brain" in PLOS ONE
DOI: 10.7910/dvn/28574
title: Study 4 - angular momentum training paradigm, classroom

description: Study 4/4 Three experiments in the laboratory involving student behavior and brain imaging, and one randomized field experiment in college physics classrooms explored the importance of physical experience in science learning. We reasoned that understanding science concepts such as torque and angular momentum is aided by activation of sensory-motor brain systems that add kinetic detail and meaning to student thinking. We tested whether physical experience with angular momentum increases involvement of sensory-motor brain systems during subsequent student reasoning and whether this involvement aids understanding. The physical experience, a brief exposure to forces associated with angular momentum, significantly improved quiz scores. Moreover, improved performance was explained by activation of sensory-motor brain regions when students later reasoned about angular momentum. This finding specifies a mechanism underlying the value of physical experience in science education, and leads the way for classroom practices where experience with the physical world is an integral part of learning.
DOI: 10.7910/dvn/8w0pxp
title: Replication Data for: Mandates, Geography, and Networks: Diffusion of Criminal Procedure Reform in Mexico

description: Why have some Mexican states proceeded faster than others in the revolutionary transformation of overhauling criminal procedure? Contributing an original index of criminal procedure reform across Mexico's 32 states from 2002 to 2011 and building on existing research on policy diffusion, this article seeks to answer this question. It finds that the 2008 constitutional reform at the federal level exerts a strong positive effect (federal mandate); being situated in a neighborhood of states that have reformed has a counterintuitive negative effect (spatial proximity); and having a governor from the same party as governors of other states that have reformed has a positive influence (network affinity). These findings yield a better understanding of the vertical, cross-level and horizontal, cross-unit diffusion of reform, with implications for understanding how to overcome challenges to criminal justice reform in Mexico, Latin America, and elsewhere.
DOI: 10.7910/dvn/xdn7zu
title: Replication Data for: Unveiling Environmental Justice Through Open Government Data: Work in Progress for Most US States

description: Open government data (OGD) are critical for environmental justice (EJ) policymaking,
characterized by power differentials and information asymmetries between government agencies, affected populations, and advocacy and interest groups. We contend that not only should state governments provide OGD, but they should remove burdens associated with its access and use to address the data divide and facilitate participation of vulnerable populations in policymaking. Applying a user-oriented approach, this article evaluates the degree of completeness, usability, and accessibility of EJ-OGD initiatives across the 50 US states. Results show that only one out of five states achieves at least half points on our EJ-OGD Implementation Score, suggesting that most states do not provide OGD to answer two core EJ questions: “To what extent is my community exposed to environmental harms and health hazards? Is the exposure disproportionately high given the community’s socioeconomic characteristics?” We discuss implications for equity and next steps for government.
description: The data were collected as part of the project “Inclusive Open Government Data Implementation for Environmental Justice: Enhancing Community Stakeholders’ Voices”.

We collected the data from September to October 2020.

Data were released in December 2021. Because of the time discrepancy, some links are no longer functioning. Links can be checked using the Wayback Machine website (https://archive.org/web/), which will show that links were active at the time of coding. The Wayback Machine archives ArcGIS and other similar tools but their functionalities are not accessible (e.g., it's not possible to select layers). 

It should be noted that some states have updated their OGD provision since our coding in October 2020 and now provide new tools for EJ. This is excellent news for EJ activists and stakeholders. When we had knowledge of these new tools, we left a note in the Summary sheet but did not change the original coding to guarantee replicability of the results presented in our paper. 

We acknowledge that OGD were often difficult to find and we do not rule out the possibility that our search may have overlooked some OGD. This might potentially bias our analysis but we believe that our search protocol was comprehensive enough to capture the vast majority of OGD, mimic the behavior of an ordinary user, and provide an overall picture of the EJOGD implementation across the 50 US states.

<br> The associated article has been awarded the Open Data Badge. Learn more about the Open Practice Badges from the 
Center for Open Science.
<br>
<br>
DOI: 10.7910/dvn/wdmsol
title: Dataset associated with publication "Are agricultural researchers working on the right crops to enable food and nutrition security under future climates?"

description: A simple crop modelling approach was applied to derive expected future changes in regional climate suitability for crops. To determine if different starch-rich and pulse crops are currently underresearched or overresearched, a global relation between crop-specific research output (number of publications) and the total nutrient output available for human consumption was calculated. The study tallied the number of scientific publications produced by crop and world region and compared this with their production statistics. Benchmarks were developed based upon the number of publications on a given crop against the expected number of publications based on the relative share of nutrient output from that crop, benchmarks were made regionally and globally. To set benchmarks, a zero-inflated Poisson generalised linear model with publications as the response variable and ln(total nutritional values +1) and region (a categorical variable which modifies the intercept) as the explanatory variables, while we predicted zero-inflation using the energy score. The regression line from this model was taken as the benchmark. To set global benchmarks, the model was applied but without the region variable in the linear regression. For each crop-region combination the difference between the actual number of publications and the regional and global benchmarks were calculated. We then summed the research intensity for each of the under researched regions.
description: R (Statistical Software), null
DOI: 10.7910/dvn/cl0ru2
title: Replication Data for: Good Times and Bad Apples: Rebel Recruitment in Crackdown and Truce

description: Even in long-running civil conflicts, governments may permit rebels to recruit and gather resources freely during years-long truce periods. Scholars and policymakers assume that these periods of forbearance allow rebel organizations to gather strength unchecked. Instead, with innovative evidence from five conflict zones in Northeast India, I show how leniency can actually undermine rebel organizations in the long run. Despite rebel leaders' best efforts, safety and comfort attract selfish opportunists who may later desert in battle, defect to the enemy, or abuse civilians. First, I show experimentally that the benefits of leniency disproportionately attract low-commitment recruits. By sampling in local recruitment hotspots, I gathered nearly 400 likely rebel recruits, testing their motivations with attitudinal questions and a conjoint survey experiment. Second, I conducted dozens of qualitative interviews with rebel leaders, rebel soldiers, and civilian observers, tracking how truce periods altered rebel recruitment and behavioral patterns over time.
description: &lt;br&gt;
ERRATUM: An erratum was approved by AJPS Editors for this manuscript. The updated code and codebook files are included with this version of the published record. (2021-07-13)
description: For the quantitative analyses, this dataset underwent an independent verification process that replicated the tables and figures in the primary article. For the supplementary materials, verification was performed solely for the successful execution of code. The verification process was carried out by the Odum Institute for Research in Social Science at the University of North Carolina at Chapel Hill. 
<br>
NOTE: Per approval of the AJPS editors, the verification of the qualitative component of this dataset was not conducted. The Open Data Badge was not awarded due to the qualitative interviews not being publicly available in a trusted repository.
<br>
The associated article has been awarded Open Materials Badge Learn more about the Open Practice Badges from the Center for Open Science.<br>

<br>
ERRATUM<br>
This dataset underwent an independent verification process that replicated the quantitative results, tables, and figures in the primary article. For the supplementary materials, verification was performed solely for the successful execution of code. The verification process was carried out by the Odum Institute for Research in Social Science at the University of North Carolina at Chapel Hill. (2021-07-13)
DOI: 10.7910/dvn/qofrf7
title: Replication Data for: Individuals in Securitization: Explaining US Presidents’ Choice to (De)Securitize North Korea

description: This dataset serves the purpose of replicating the results presented in tables 1 to 4 in the article "Individuals in Securitization: Explaining US Presidents’ Choice to (De)Securitize North Korea." It includes the text files analysed via Profiler Plus, the Excel sheet used for calculating operational code beliefs, an Excel sheet containing the norming group, and a document explaining the replication steps.
DOI: 10.7910/dvn/waqnxd
title: Dominant party rule, elections, and cabinet instability in African autocracies

description: I draw on the authoritarian institutions literature to explain the role of dominant parties in constraining the ability of
autocrats to reshuffle cabinet ministers. Dominant party leaders are constrained in their ability to frequently reshuffle
ministers by the need to maintain credible power-sharing commitments with party elites. These constraints also produce
distinct temporal patterns of instability where large reshuffles occur following elections. Conversely, personalist leaders
face fewer power-sharing constraints and engage in more extensive cabinet reshuffles at more arbitrary intervals. Military
leaders face complex constraints that depend on whether officers or civilians occupy cabinet posts and the extent to which
leaders are dependent upon civilian ministers for regime performance and popular support. Empirical analyses using data
on the cabinets of 94 authoritarian leaders from 37 African countries between 1976 and 2010 support the theoretical
expectations for dominant party and personalist leaders, but are inconclusive for military leaders.