cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8bv8p/1
title: Full dataset for CAM manuscript (bmjopen-2013-003360.R1)

description: This dataset contains the complete information for the statistical analysis of this publication. The data were collected in the field. The titles of variables were self-explanary. For binary variables, "Yes" was commonly coded as 1 and "No" as 0. For the variable of asthma control ("Control"), "controlled" was coded as 0, "partially controlled" as 1 and "uncontrolled" as 2. "CAM_types" reported all different types of complementary and alternative asthma medicines which the patients received in the past 12 months.
DOI: 10.5061/dryad.9f8q91q3/2
title: PDvsPD.SHR4_metabprofile

description: Metabolic and morphometric profile of PD and PD.SHR4 strains
DOI: 10.5061/dryad.b5m6g/1
title: BMJOpen
DOI: 10.5061/dryad.hc257/10
title: Eleutherodactylus  antillensis ribosomal RPL 9 intron 4 (RPL9int4) alignment + 2 outgroups
DOI: 10.5061/dryad.hc257/3
title: Eleutherodactylus antillensis myosin heavy chain intron (MYH) alignment
DOI: 10.5061/dryad.hc257/4
title: Eleutherodactylus antillensis rhodopsin intron 1 (RH1) alignment
DOI: 10.5061/dryad.hc257/5
title: Eleutherodactylus  antillensis ribosomal RPL 9 intron 4 (RPL9int4) alignment
DOI: 10.5061/dryad.hc257/6
title: Eleutherodactylus  antillensis beta-crystallin intron 1 (CRYBA) alignment + 2 outgroups
DOI: 10.5061/dryad.hc257/7
title: Eleutherodactylus antillensis mtDNA control region (CR) alignment + 2 outgroups
DOI: 10.5061/dryad.hc257/8
title: Eleutherodactylus antillensis myosin heavy chain intron (MYH) alignment + 2 outgroups
DOI: 10.5061/dryad.hc257/9
title: Eleutherodactylus antillensis rhodopsin intron 1 (RH1) alignment + 2 outgroups
DOI: 10.5061/dryad.kb27f3t1/1
title: MATRIX_ANALYSES

description: Contains the R codes, a readme file and sample data
DOI: 10.5061/dryad.kp8t3/1
title: Piras et al Bite of the cats online Appendices CORRECT

description: This is the list of online appendices.
DOI: 10.5061/dryad.n3v10/1
title: B. schlosseri microsatellite data

description: Genepop-formatted file containing individual genotype data (10 microsatellite loci)
DOI: 10.5061/dryad.n3v10/2
title: B. schlosseri COI data (Arlequin)

description: Arlequin-formatted file of COI data by population
DOI: 10.5061/dryad.n3v10/3
title: B. schlosseri COI data (by individual)

description: Phylip-formatted file of COI sequence data by individual
DOI: 10.5061/dryad.n3v10/5
title: Boat_connectivity

description: This file contains a record of the number of times boaters have mentioned they have visited two locations sampled in the study.
DOI: 10.5061/dryad.sh487/2
title: Laine_etal_2012_behaviour

description: The behavioural measurements of the nine-spined sticklebacks for the principal component analyses. Time_of_orient: time spent with orientation towards the stimulus fish;Number_of_attacks:number of attacks towards the stimulus fish;Time_to_feed:time until first feeding attempt in normal environment;Risk_taking: time until first feeding attempt in a disturbed environment;Time_to_headout:time until the fish's head was out from refuge;Time_to_bodyout:time until the whole fish was out from refuge
DOI: 10.5061/dryad.sh487/3
title: Laine_etal_2012_microsats

description: The microsatellite alleles as fragment lengths. F1,2,3,4,5: Mother of that family;M1,2,3,4,5: Father of that family
DOI: 10.5061/dryad.vh1qk/1
title: Binary AFLP data matrix

description: Data generated by genotyping of 13 different AFLP primer combinations. Matrix holds data, as used for analyses, after data refinement procedures. Rows represent different specimens. 1st column indicates species, 2nd column an individual ID. Following columns hold dominant binary data for 1030 polymorphic loci. Letters in loci names correspond to the three selective nucleotides of selective primers on the EcoRI and MseI site and numbers to the size of respective fragments. "?" indicates missing data.
DOI: 10.5061/dryad.1534j/1
title: Presence/absence data and altitude data per Ithomiini species in the incidence-dataset

description: Presence/absence data obtained from field inventories supplemented by specimen data from multiple museum and private collections for 15 sites from eastern Ecuador. Locations and altitudes of the sites are given in Chazot et al (2013, American Naturalist). Each species was assigned to a mimicry complex. Some species exhibit sexual dimorphism. In some cases different subspecies/forms belong to different mimicry complexes, and are considered as different taxa. Minimum, maximum, median and mean altitude of each species are also given (extracted from a database of 3193 species locality records, KRW unpublished data).
DOI: 10.5061/dryad.1534j/2
title: Abundance data per Ithomiini species in the abundance-dataset

description: Abundance data obtained from field inventories for 7 sites from eastern Ecuador. Data for an additional site (JS) was obtained from the literature (Beccaloni 1997). Locations and altitudes of the sites are given in Chazot et al (2013, American Naturalist). Each species was assigned to a mimicry complex. Some species exhibit sexual dimorphism. In some cases different subspecies/forms belong to different mimicry complexes, and are considered as different taxa.
DOI: 10.5061/dryad.1534j/3
title: Genbank accession numbers

description: GenBank accession numbers, locality and references of sequences used in the study.
DOI: 10.5061/dryad.21nf3/1
title: FLYTREEmitoGeneAln

description: Nucleotide alignments in FASTA format for mitochondrial genes sequenced in the FLYTREE PROJECT. These sequences were used in Wiegmann et al. 2011 PNAS 108:5690 (doi:10.1073/pnas.1012675108) and in Caravas and Friedrich 2012 Syst. Ent. (doi: 10.1111/j.1365-3113.2012.00657.x)
DOI: 10.5061/dryad.21nf3/2
title: FLYTREENuclearGenes_ALN

description: Nucleotide alignments in FASTA format for all nuclear genes sequenced in the FLYTREE PROJECT. These sequences were used in Wiegmann et al. 2011 PNAS 108:5690 (doi:10.1073/pnas.1012675108) and in Caravas and Friedrich 2012 Syst. Ent. (doi: 10.1111/j.1365-3113.2012.00657.x)
DOI: 10.5061/dryad.44sf1/10
title: s_5_2_sequence_CACTCC_start.txt
DOI: 10.5061/dryad.44sf1/3
title: s_1_2_sequence_CTTTCC_start.txt
DOI: 10.5061/dryad.44sf1/4
title: s_2_1_sequence_AATTC_start.txt
DOI: 10.5061/dryad.44sf1/5
title: s_2_2_sequence_TCTTCC_start.txt
DOI: 10.5061/dryad.44sf1/6
title: s_3_1_sequence_AATTC_start.txt
DOI: 10.5061/dryad.44sf1/7
title: s_3_2_sequence_CTTTCC_start.txt
DOI: 10.5061/dryad.44sf1/8
title: s_3_2_sequence_TTGTCC_start.txt
DOI: 10.5061/dryad.44sf1/9
title: s_5_1_sequence_AATTC_start.txt
DOI: 10.5061/dryad.4q34p37b/10
title: Tree-Maximum Likelihood ITS tree all

description: Maximum Likelihood tree based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps).
DOI: 10.5061/dryad.4q34p37b/2
title: Alignment non-redundant ITS sequences

description: Fasta (txt) file with the aligned non-redundant ITS sequences, used in the analysis to detect correlated evolution between substrate and (rapid) senescence.
DOI: 10.5061/dryad.4q34p37b/3
title: Character matrix-non-redundant scenario

description: Binomic character matrix of the strains used in the non-redundant scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
DOI: 10.5061/dryad.4q34p37b/4
title: Character matrix-best scenario

description: Binomic character matrix of the strains used in the 'best case' scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
DOI: 10.5061/dryad.4q34p37b/5
title: Character matrix-final scenario

description: Binomic character matrix of the strains used in the final scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
DOI: 10.5061/dryad.4q34p37b/6
title: Character matrix-worst case scenario

description: Binomic character matrix of the strains used in the 'worst case' scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
DOI: 10.5061/dryad.4q34p37b/7
title: Tree-all Most Parsimonious ITS trees all

description: All most Parsimonious trees based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps).
DOI: 10.5061/dryad.4q34p37b/8
title: Tree-all Most Parsimonious trees non-redundant

description: All most Parsimonious trees based on the ITS sequences of non-redundant strains. In newick format (Mega5; 1000 bootstraps).
DOI: 10.5061/dryad.4q34p37b/9
title: Tree-Maximum Likelihood ITS non-redundant

description: Maximum Likelihood tree based on the ITS sequences of the non-redundant strains. In newick format (Mega5; 1000 bootstraps).
DOI: 10.5061/dryad.7p79h/1
title: Data from Almbro & Simmons 2013

description: Excel file containing original data on the morphology, strength and productivity of beetles fathered by males exposed to ionizing radiation (F1), and of beetles subsequently exposed to sexual selection or enforced monogamy for 2 (F2 and F3) generations.
DOI: 10.5061/dryad.9qv2k/1
title: tpc112227_Supplemental_Dataset1

description: Unfiltered, unnormalized data for protein identifications.
DOI: 10.5061/dryad.9qv2k/2
title: tpc112227_Supplemental_Dataset2

description: 8005 proteins and corresponding NSAF vaues.
DOI: 10.5061/dryad.9qv2k/3
title: tpc112227_Supplemental_Dataset3

description: Normalized Phosphopeptide nSPCs. Tab 1:  Unfiltered list of all phosphopeptides identified and their respective normalized spectral counts. Tab 2:  Phosphopeptides matched to protein NSAFs.
DOI: 10.5061/dryad.j855b/1
title: Year-round mallard sampling for low pathogenic avian influenza virus (LPAIV) in The Netherlands

description: Mallards were caught at a duck decoy located near Oud Alblas in the Alblasserwaard, The Netherlands, from March 2010 until February 2011. Each captured mallard was marked with a metal ring, sexed and aged. Cloacal and oropharyngeal samples were taken for detection of current LPAIV infection, and blood samples collected for detection of antibodies to AIV. The cycle threshold (Ct) value, which is the first real-time amplification cycle in which matrix gene amplification was detected, was used to assess the degree of viral shedding from the cloaca and oropharynx. The Ct-value is inversely proportional to the number of virus particles in a sample. Feather samples were taken to assess the origin of birds (resident, local migrant, distant migrant) using stable hydrogen isotope analysis. For more details see Appendix 2.
DOI: 10.5061/dryad.jg081/1
title: SPmodel_both types

description: This is the computer simulation model used for data collection. The model is for the program netlogo, which is free to download at: http://ccl.northwestern.edu/netlogo/
DOI: 10.5061/dryad.n3q59/1
title: Genotypes of Syngnathus abaster individuals of Ria Formosa, Portugal

description: Collected in the field in March 2012, genotyped at four microsatellite loci (28B3, 28E6, 28E8, and 28F3), allele scoring with STRand 2.4.59
DOI: 10.5061/dryad.v72m2/1
title: P. antipodarum 454 read sequences

description: Read sequences from 454 sequencing of two sexual and two asexual lineages of the New Zealand snail Potamopyrgus antipodarum. RNA was extracted from four independently-isolated P. antipodarum lineages descended from wild-caught females originally sampled from three New Zealand South Island lakes: Lake Alexandrina (one sexual diploid lineage and one asexual triploid lineage), Lady Lake (sexual diploid), and Lake Mapourika (asexual triploid). Each lineage was represented by four arbitrarily selected adult females. For details on extraction and sequencing efforts, see the associated publication.
DOI: 10.5061/dryad.v72m2/2
title: P. antipodarum contig annotations

description: BLAST results and Gene Ontology annotations of contig sequences from transcriptome sequencing of two sexual and two asexual lineages of New Zealand snail Potamopyrgus antipodarum. BLAST annotations were made using the Tera-BLASTX implementation of the BLASTX algorithm. GO annotations were made using the software BLAST2GO; BLAST2GO was provided with BLASTX results of a search against the NCBI ns database, and default values were used for all cutoff parameters.
DOI: 10.5061/dryad.v72m2/3
title: P. antipodarum contig assemblies

description: Assemblies of reads from the transcriptome sequencing of two sexual and two asexual lineages of New Zealand snail Potamopyrgus antipodarum. Read assembly was carried out using the sotware MIRA3. The assemblies are in .ace format.
DOI: 10.5061/dryad.v72m2/4
title: P. antipodarum contig sequences

description: Assembled contig sequences from the 454 transcriptome sequencing of two sexual and two asexual lineages of New Zealand snail Potamopyrgus antipodarum. Contig sequences were produced by the software MIRA3.
DOI: 10.5061/dryad.v72m2/5
title: P. antipodarum microsatellite loci

description: These files describe the locations (flanking sequence) of putative microsatellite loci in the New Zealand snail Potamopyrgus antipodarum. The loci were identified by scanning contig sequences from a 454 transcriptome sequencing experiment with the software MSATCOMMANDER.
DOI: 10.5061/dryad.v72m2/6
title: P. antipodarum SNP loci

description: Locations of SNP loci from 454 transcriptome sequencing of two sexual and two asexual lineages the New Zealand snail Potamopyrgus antipodarum. Positions of SNPs are relative to contig sequences assembled in this sequencing experiment. The software MIRA3 was used for both read alignment (i.e., contig generation) and SNP discovery. Both padded and unpadded positions are given.
DOI: 10.5061/dryad.21nf3/10
title: PER_NoIntrons_alnFLYTREE

description: Alignment of dipteran period (per) gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/3
title: 18SrDNA_alnFLYTREE

description: Alignment of dipteran 18S ribosomal RNA gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/4
title: 28SrDNA_alnFLYTREE

description: Alignment of dipteran 28S ribosomal RNA gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/5
title: AATS_Exon1alnFLYTREE

description: Alignment of dipteran AATS1 gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/6
title: CAD_noIntrons.alnFLYTREE

description: Alignment of dipteran CAD (= CPSase, rudimentary) gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/7
title: G6PD_alnFLYTREE

description: Alignment of dipteran G6PD gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/8
title: GART_alnFLYTREE

description: Alignment of dipteran GART gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/9
title: PEPCK_alnFLYTREE

description: Alignment of dipteran PEPCK gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.2f185/1
title: Data from Gautier et al., 2010 (PLoS ONE 5(9): e13038)

description: See readme file.
DOI: 10.5061/dryad.362kt4r5/1
title: Data for Roff and Fairbairn Evolution 2012

description: Excel file with data and descriptions
DOI: 10.5061/dryad.43sg3/2
title: AMF occurrence data in Pilea pumila roots
DOI: 10.5061/dryad.43sg3/3
title: Alignment for RaxML EPA

description: Aligned sequence file used for evolutionary placement of short reads. Query sequences (new to this study) are listed by their Genbank Accession # (KF38624-KF386347); other sequences are references.
DOI: 10.5061/dryad.44sf1/11
title: s_5_2_sequence_TCTTCC_start.txt
DOI: 10.5061/dryad.44sf1/12
title: s_6_1_sequence_AATTC_start.txt
DOI: 10.5061/dryad.44sf1/13
title: s_6_2_sequence_TTGTCC_start.txt
DOI: 10.5061/dryad.4h402262/1
title: PONE_mesquite

description: This data file contains 3 alignments of fungal ITS rDNA sequences and 9 alignments of fungal LSU rDNA sequences amplified and cloned from total genomic DNA isolated from Ah horizon forest soil of the Hainich-Dün Biodiversity Exploratory.
DOI: 10.5061/dryad.4q34p37b/11
title: Tree-Minimum Evolution ITS Tree all

description: Minimum Evolution tree based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps).
DOI: 10.5061/dryad.4q34p37b/12
title: Tree-Minimum Evolution non-redundant

description: Minimum Evolution tree based on the ITS sequences of the non-redundant strains. In newick format (Mega5; 1000 bootstraps).
DOI: 10.5061/dryad.71627sm2/1
title: Irwin_2012_AmNat_Dryad_submission

description: This file was prepared by Darren E. Irwin on March 3, 2012, and contains data from the following paper: Irwin, Darren E. 2012. Local adaptation along smooth ecological gradients causes phylogeographic breaks and phenotypic clustering. The American Naturalist, in press. | The format of the data is as follows: | For each set of simulations (i.e., run under the same parameter values), I first provide values for the following parameters: | set_name (an arbitrary 1- or 2-letter code to identify that set) | N (initial total population size across entire range) | sigma_disp (the width of the dispersal curve) | sigma_w (the width of the selection curve at each geographic location; the smaller this is, the stronger the selection) | mu (the mutation rate, per individual per generation) | sigma_mut (the width of the mutation size curve) | The parameters for the set are then followed by the genealogies and trait values for a series of independent simulations, as follows: | I provide the name of the genealogy (the set_name plus an integer indicating the particular simulation), followed by a long string containing the genealogy of 60 individuals from the population, in typical Newick or Nexus format (here, they are the same); this genealogy string can be copied and pasted into a program such as TreeView or some other tree-drawing program. | Individuals in the genealogy are identified by an integer as follows: | Individuals 1-10: Closest to location x=0.0 | Individuals 11-20: Closest to location x=0.2 | Individuals 21-30: Closest to location x=0.4 | Individuals 31-40: Closest to location x=0.6 | Individuals 41-50: Closest to location x=0.8 | Individuals 51-60: Closest to location x=1.0 | Branch lengths in the genealogy represent the number of generations. | Following the genealogy, I provide a table showing the trait value (y) of each individual, using the same integer identifiers of individuals as in the genealogy. | Data from different sets of simulations are separated by: -------------------- | Data from different simulations within a set are separated by: --
DOI: 10.5061/dryad.789p7jb3/1
title: DonneeBrutCryphoArtMondial
DOI: 10.5061/dryad.7tr51/1
title: Navascues.PhD.DATA

description: Nuclear and chloroplast microsatellite data
DOI: 10.5061/dryad.8m648/1
title: SNP genotypes and related information for Zea mays ssp. parviglumis. Z. m. ssp. mexicana and Tripsacum dactyloides
DOI: 10.5061/dryad.9f392s7r/1
title: Simochromis pleurospilus microsatellite genotypes

description: see ReadMe file
DOI: 10.5061/dryad.9qv2k/4
title: tpc112227_Supplemental_Dataset4

description: Phosphoprotein normalized spectral counts.
DOI: 10.5061/dryad.9qv2k/5
title: tpc112227_Supplemental_Dataset5

description: Motifs identified via Motif-X surrounding localized phospho -serine, -threonine and -tyrosine residues.
DOI: 10.5061/dryad.9qv2k/6
title: tpc112227_Supplemental_Dataset6

description: Individual peptides and phosphopeptides used in this study.
DOI: 10.5061/dryad.9qv2k/7
title: tpc112227_Supplemental_Figs_Tbls

description: Supplemental Figures 1-4 and Supplemental Tables 1-7
DOI: 10.5061/dryad.9qv2k/8
title: tpc_1122277_Supplemental_Tbl8
DOI: 10.5061/dryad.dv6j84kt/1
title: Thielsch et al. MER Discrimination of hybrid classes in Daphnia

description: Zipped archive contains text files including genotyping data, locality information, infiles for NewHybrids, Structure, Genetix, and Micro-Checker (xls) as well as an information file about the data package
DOI: 10.5061/dryad.qc57j/1
title: Demographics, laboratory, imaging and treatment characteristics

description: Anonymized medical record data from individual subjects
DOI: 10.5061/dryad.v5007p45/1
title: Effect sizes and study identities

description: An Excel spreadsheet of the effect sizes (Hedges G) included in our study. Note: Missing Hedges' G indicates that sample size was too small to estimate effect size or direction was not provided in original paper.
DOI: 10.5061/dryad.vb808/1
title: DuVal 2012 - female mate fidelity within and between years

description: Each row in this data table represents one of the 309 nests that provide information on lance-tailed manakin female fidelity to mates within and between years. Data include information on fidelity in relation to prior and subsequent nests of the same female, nest fate, and whether the sire of this nest displayed in the same location as the female's previous mate. See README file for detailed description of table fields.
DOI: 10.5061/dryad.vb808/2
title: DuVal 2012 - fidelity and male siring rank

description: Data used to investigate whether females are more likely to return to mate with highly successful males. Data are 111 observations of nesting by 68 females that mated with males alive in the following breeding season, with subsets specified for some subsequent analyses. See README file for detailed description of table fields.
DOI: 10.5061/dryad.vb808/3
title: DuVal 2012 - Fidelity and total male success

description: Data used to assess whether successful males achieve disproportionate levels of success through mate fidelity. Data are 110 individual males siring any chicks in 2000-2011. See README file for detailed description of table fields.
DOI: 10.5061/dryad.vb808/4
title: DuVal 2012 - Fidelity and annual male success

description: Data used to assess the proportionate influence of mate fidelity for males' annual reproductive success. Data are 62 observations on 35 males that sired any chicks through fidelity in 2000-2011. See README file for detailed description of table fields.
DOI: 10.5061/dryad.21nf3/11
title: PGDintrons_alnFLYTREE

description: Alignment of dipteran PGD gene sequences, with introns included in the alignment,from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/12
title: PGDnointrons_alnFLYTREE

description: Alignment of dipteran PGD gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/13
title: PUG_C1THFsynthase_alnFLYTREE

description: Alignment of dipteran CH1-THF synthase (pug) gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/14
title: SINA_alnFLYTREE

description: Alignment of dipteran SINA gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/15
title: SNF_alnFLYTREE

description: Alignment of dipteran sans fille (snf) gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/16
title: SYX1A_alnFLYTREE

description: Alignment of dipteran SYX1A gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/17
title: TPI_noIntrons_alnFLYTREE

description: Alignment of dipteran TPI gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/18
title: mtAtp6-alnFLYTREE

description: Alignment of dipteran mitochondrial ATP6 gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.21nf3/19
title: mtAtp8-alnFLYTREE

description: Alignment of dipteran mitochondrial ATP8 gene sequences from the FLYTREE project in fasta format.
DOI: 10.5061/dryad.2jd88/1
title: evaniscus_merged_owl

description: Web Ontology Language (OWL) representation of descriptive character matrix from [Mullins et al. 2012] using the Comparative Data Analysis Ontology (CDAO). Character states are annotated with Entity–Quality phenotype descriptions using the Hymenoptera Anatomy Ontology (HAO), Phenotype and Trait Ontology (PATO), and the Biospatial Ontology (BSPO).