cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1285/i20705948v16n3p584
title: Estimation and prediction for proportional hazard family based on a simple step-stress model with Type-II censored data

description: The accelerated life testing is the key methodology of assessing product reliability rapidly. This type of life testing is more efficient with low cost than the classical reliability testing. For this, estimating of the underlying model and predicting the future life failure times are issues deserve the attention and follow-up. In this paper, a simple step-stress testing experiment is considered when the lifetime data comes from a proportional hazard family under Type-II censoring. We discuss frequentist and Bayes estimates of the underlying model parameters. Prediction of unobserved or censored lifetimes is also tackled here, and frequentist and Bayesian predictors are developed. An algorithm is presented to generate ordered lifetime data from the proportional hazard family under the simple step-stress accelerated lifetime testing. Two numerical examples are also provided to illustrate the estimation and prediction methods presented in this paper. Finally, a Monte Carlo simulation experiment is performed to evaluate the performance of the various estimation and prediction methods developed in this paper.
DOI: 10.13127/tinitaly/1.0
title: TINITALY, a digital elevation model of Italy with a 10 meters cell size, version 1.0
title: TINITALY, modello altimetrico digitale d'Italia a risoluzione 10 metri, versione 1.0
title: TINITALY

description: The dataset is a 10 m-resolution DEM in grid format covering the whole Italian territory. The DEM is encoded as “ESRI ASCII Raster” obtained by interpolating the original DEM in Triangular Irregular Network (TIN) format. The TIN version benefited from the systematic application of the DEST algorithm. The projection is UTM, the World Geodetic System 1984 (WGS 84). To provide the dataset as a single seamless DEM, the sole zone 32 N was selected, although about half of Italy belongs to zone 33 N. The database is arranged in 193 square tiles having 50 km side.
description: Il dato è un DEM a passo 10 m che copre l'intero territorio italiano. La codifica del dato è "ESRI ASCII Raster", ottenuto interpolando il DEM originale in formato "Triangular Irregular Network" (TIN). La versione TIN del DEM era stata ottenuta applicando sistematicamente l'algoritmo DEST. La proiezione è UTM, World Geodetic System 1984 (WGS 84). Per fornire il dato come un unico DEM continuo, si è scelto di utilizzare solo la zona 32 N, sebbene circa metà dell'Italia ricada naturalmente nella zona 33 N. Il dato è organizzato in 193 tavole aventi mediamente 50 km di lato.
description: The DEM was obtained from heterogeneous vector datasets, mostly consisting in elevation contour lines and elevation points from several sources. The input vector database was carefully cleaned up to obtain a seamless TIN derived by using the DEST algorithm, which enhances the TIN mesh with respect to the standard Delaunay triangulation. The whole TINITALY/01 DEM was converted in grid format (10-m cell size) according to a tiled structure composed of 193 elements. See references for additional details.
description: The data is arranged in 193 zipped files. The grid is encoded as “ESRI ASCII Raster” UTM 32N WGS84
DOI: 10.17189/1520649
title: LRO MOON MINI-RF 5 MAP-PROJECTED CALIBRATED DATA REC V1.0
DOI: 10.17632/xp55pf3krg.1
title: Employing Acetowhitening to Minimize Mohs Micrographic Surgery Margins in Squamous Cell Carcinoma In Situ

description: This data is representative of the margins identified in our study during which we employed acetowhitening for defining margins in squamous cell carcinoma in situ patients undergoing Mohs micrographic surgery.
DOI: 10.23696/vpartydsv2
title: V-Party Dataset v2
DOI: 10.24432/c54s4k
title: Human Activity Recognition Using Smartphones
DOI: 10.25919/5e4f60ea8b64e
title: Rattus rattus chromosomal assembly (New zealand strain)

description: Genome assembly for Rattus rattus (New Zealand), completed using 130x total of illumina paired-end data, Oxford nanopore PromethION and HiC by the New Zealand Rat genome consortium (CSIRO, PF2050, University of Auckland & University of Otago).
DOI: 10.26207/cbh2-ym51
title: Research data supporting: Observation of odd-parity superconductivity in UTe2
DOI: 10.5066/p9bz5ij9
title: Digital Datasets Documenting Surface Fault Rupture and Ground Deformation Features Produced by the Ridgecrest M6.4 and M7.1 Earthquake Sequence of July 4 and 5, 2019

description: This product is a collection of digital data that document fault rupture and ground-deformation features produced by the Ridgecrest M6.4 and M7.1 earthquake sequence of July 4 and 5, 2019. These datasets are described and more fully discussed in Ponti and others (2020) (see External Resources Section below for the full reference). Included in this collection are: GIS Shapefile and KMZ file of field-verified fault rupture and ground deformation features from direct field mapping, or interpreted from ground observations, airborne and satellite optical imagery, digital surface models derived from lidar and structure-from-motion optical image analysis, sub-pixel correlation of multi-temporal optical imagery, and phase gradient maps from coseismic radar interferograms; Comma-separated text and KMZ files of field observations at sites of fault rupture and ground deformation where quantitative displacement measurements were obtained. As discussed in Ponti and others (2020), this data release will be updated as additional data products become available. Anticipated future releases will include: updated observations at sites where quantataive displacement measurements were obtained, including ground photographs of described features additional qualitative ground deformation observations, including associated photographs sites where no ground deformation was observed updated rupture and ground deformation mapping.
DOI: 10.5066/p9ena24y
title: Pre-existing features associated with active faulting in the vicinity of the 2019 Ridgecrest, California earthquake sequence

description: This dataset is composed of linear active tectonic and other relevant features (scarps, deflected drainages, and lineaments and contrasts in topography, vegetation, and ground color) mapped based on high-resolution topography, aerial/satellite imagery, and field observations. The mapping covers the area surrounding the 2019 Ridgecrest, California earthquake surface ruptures. Point locations of field observations are also included.
DOI: 10.5281/zenodo.10855128
title: Healthy woodchuck genome with viral sequences appended used for single-cell RNA-seq analysis
DOI: 10.5281/zenodo.13840584
title: Cascadia GNSS denoised daily time series

description: The datasets are in netcdf format. The position times series are indexed by date and station id.

Each dataset has the following variables for each component (east, north and vertical):



detrend input: Time series after detrending and first cleaning

detrend denoised: Time series after denoising with the GNN

detrend pred: Noise prediction by the GNN

Final denoised: denoised time series by the GNN, after adding the trend back

Original: Original time series from the processing center


CWU: Central Washignton University

UNR: University of Nevada Reno
DOI: 10.5281/zenodo.8014905
title: Experimental investigation of the effects of particle shape and friction on the mechanics of granular media

description: This dataset corresponds to the raw data and experimental measurements of the PhD thesis "Experimental investigation of the effects of particle shape and friction on the mechanics of granular media" of Gustavo Pinzón (2023, Université Grenoble Alpes), available at: https://hal.science/tel-04202827v1. 
The experiments correspond to a drained triaxial compression test of cylindrical granular specimens, a common  testing procedure used in soil mechanics to characterise the mechanical response of a specimen under deviatoric loading. Each specimen is 140mm in height and 70mm in diameter, and is composed of more than 20000 ellipsoidal particles of a given aspect ratio and interparticle friction. The dataset comprises the test of six specimens, as a result of the combination of 3 particles shapes (Flat, Medium, and Rounded) and 2 values of interparticle friction (Rough and Smooth). A naming system for the specimens is adopted to reflect the morphology of the composing particles (e.g., the test EFR correspond to the specimen with Flat and Rough particles). Further details on the experimental methods are found in Ch. 2 of the thesis.
 The compression tests are performed inside the x-ray scanner of Laboratoire 3SR in Grenoble (France), where the specimens are scanned each 0.5% of axial shortening, at an isotropic voxel size of 100 micrometer per pixel. The obtained radiographies are reconstructed using a Filtered Back Projection algorithm, using the software given by the x-ray cabin manufacturer (RX Solutions, France). The series of obtained 16-bit greyscale 3D images are processed with the open source software spam, version 0.6.2. The coordinate system of all the images is ZYX, where Z corresponds to compression direction. Further details on the image analysis techniques are found in Ch. 3 of the thesis.
Additional greyscale images, raw projections, and x-ray tomography files are available upon request. For visualisation purposes, the 3D images in .tif format can be opened using Fiji.
DOI: 10.6084/m9.figshare.27610068
title: Overlapping nuclear import and export paths unveiled by two-color MINFLUX

description: The Jump Step Histogram Simulator is a Microsoft Excel Spreadsheet that simulates jump step histograms for diffusing particles, including the effect of localization precision. A maximum of three distinct molecular species are allowed in the population, including additional features of jiggle, linear or random drift, and rotational motion of large particles.

System Requirements:
Microsoft Excel ver. 16.76 (23081101) or later
Tested on the above software version; no non-standard hardware required.

Installation:
Copy/download file to computer and open with Microsoft Excel. Typically takes a few minutes.

Demo:
Enable ‘Calculation’ within Excel to run a simulation.
The normal output is a histogram of jump step sizes and R2/t values for the input parameters.
Run time is a few minutes.

Instructions:
A description of various features and how to input parameters and run the simulation are explained within the Excel file.
DOI: 10.6084/m9.figshare.27897546
title: Global dung mass

description: We combine livestock and wild herbivore dung mass data from surveys at 760 dryland sites worldwide, representing independent measurements of herbivory, to generate high-resolution maps.
DOI: 10.6084/m9.figshare.27931131
title: Open-source Raman spectra of chemical compounds for active pharmaceutical ingredient development

description: A Raman spectral dataset comprising 3,510 spectra from 32 chemical substances. This dataset includes organic solvents and reagents commonly used in API development, along with information regarding the products in the XLSX, and code to visualise and perform technical validation on the data.
DOI: 10.6084/m9.figshare.28428959
title: Supplementary Material for: A case report: Metastatic Gestational Trophoblastic Neoplasia leading to acute respiratory failure and death. About a particularly challenging management in the intensive care unit, and exploring the potential of Pembrolizumab in treating frail pretreated Gestational Trophoblastic Neoplasia

description: Abstract:

Case presentation:

We present the case of a 37-year-old female patient who developed an acute respiratory failure requiring mechanical ventilation, two months after term delivery by cesarian section. The diagnosis of gestational trophoblastic neoplasia was suspected due to high level of HCG in post-partum period and thoracic imaging suggesting multiple pulmonary metastases. No biopsy was available. She subsequently developed severe ARDS requiring veno-venous extracorporeal membrane oxygenation (VV-ECMO) support alongside concurrent polychemotherapy. 
After spending 61 days in the intensive care unit (ICU), and achieving biological complete remission based on HCG monitoring, the patient was transferred to the oncology ward. Due to prolonged hypoperfusion and hypoxemia the patient developed ischemic cholangiopathy, severely constraining further therapeutic options. After 4 months of biological remission, the patient experienced a recurrence based on HCG rising and reappearing of pulmonary lesions on thoracic imaging in the lungs. 

In second-line, the patient was treated with carboplatin, with no significant response. In third-line, Pembrolizumab was used, and the patient experienced a significant decrease in HCG. However, due to hematologic toxicity, we discontinued the treatment. Subsequently, HCG level raised and the patient rapidly developed hemorrhagic cerebral metastasis and succumbed shortly thereafter.

Conclusion:

This case underscores the importance of prompt recognition and timely intervention in the management of patients with ARDS during the early postpartum period. GTN with lung involvement should be considered after excluding the other more frequent causes of ARDS. It also highlights how ECMO support enables the continuation of chemotherapy and the achievement of remission in choriocarcinoma. 
Furthermore, due to the inability to initiate the desired chemotherapy, immunotherapy was introduced as a possible treatment modality. Therefore, this case underscores the importance of adaptability in treatment plans based on patient-specific clinical conditions and collaborative decision-making with specialized centers. 
Finally, it emphasizes the efficacy of Pembrolizumab, even as a monotherapy, in pre-treated choriocarcinoma cases.
DOI: 10.6084/m9.figshare.28643552
title: Supplementary Material for: Non malignant ACTH-Independent Cushing Syndrome in Pediatric Patients: A Retrospective Observational Cohort Study

description: Purpose: ACTH-independent Cushing’s syndrome (CS) is a rare cause of pediatric CS. Our objective was to describe the features of pediatric ACTH-independent CS and to compare groups defined by etiology. 
Methods: We conducted a retrospective observational study of patients aged 0–18 years at diagnosis between 1992–2022 for ACTH-independent CS in three Paris pediatric hospitals. Additionally, we compared the outcomes of McCune-Albright syndrome (MCAS) patients with CS and without CS. 
Results: Of the 15 patients with CS, seven had MCAS, seven primary pigmented nodular adrenocortical disease (PPNAD) as part of CNC (Carney complex), and one had CS with no etiology found. Age at CS diagnosis was 0,3 year old (0,17;1) in MCAS and 9 years old (5;15) in PPNAD. The MCAS group had more impaired growth retardation (-4,75 SDS in MCAS vs -1 SDS in CNC, p = 0,006) and higher prevalences of intrauterine growth retardation (P=0.01) and liver dysfunction at diagnosis (P=0.04). All seven MCAS patients had learning disabilities vs. only two CNC patients. 12 out of 15 had bilateral adrenalectomy. None of the MCAS patients received Growth hormone therapy, while 4 CNC patients benefited from growth hormon therapy. At end of follow up, growth recovered in both groups, albeit less in the MCAS group (-1,5 SDS in MCAS vs -0,5 SDS in CNC), in which liver dysfunction often persisted. 
Conclusions: ACTH-independent CS is rare but can lead to significant burden in children. Early diagnosis and management are essential. New drugs targeting adrenal steroid synthesis are awaited.
DOI: 10.6084/m9.figshare.28643558
title: Supplementary Material for: Clinical and Genetic Aspects of Verheij Syndrome in Two Cases

description: Introduction: Verheij syndrome is associated with a deletion on chromosome 8q24.3 region or PUF60 gene mutations. A variety of symptoms including feeding problems, microcephaly, joint laxity, and intellectual disability, cardiac defects, and renal abnormalities are the characteristic features of the syndrome. Case Presentation: In the current report, two cases were presented with Verheij Syndrome in different ages. And with this study, we aimed to present the clinical findings of a likely pathogenic novel variant in the first case NM_078480.3(PUF60):c.297+1G&gt;C, and in the second case a likely pathogenic heterozygous missense variant NM_078480.3(PUF60):c.47G&gt;T p.(G16V). Conclusion: A very rare syndrome – Verheij Syndrome – was reported in two cases with genotype phenotype correlation in this report.
DOI: 10.6084/m9.figshare.28646573
title: <sub>Datasets for the eLife manuscript"</sub><sub>ORMDL3 restrains type I interferon signaling and anti-tumor immunity by promoting RIG-I degradation"</sub>

description: Mounting evidence has demonstrated the genetic association of ORMDL sphingolipid biosynthesis regulator 3 (ORMDL3) gene polymorphisms with bronchial asthma and a diverse set of inflammatory disorders. However, its role in type I interferon (type I IFN) signaling remains poorly defined. Herein, we report that ORMDL3 is a negative modulator of the type I IFN signaling by interacting with mitochondrial antiviral signaling protein (MAVS) and subsequently promoting the proteasome-mediated degradation of retinoic acid-inducible gene I (RIG-I). Immunoprecipitation coupled with mass spectrometry (IP-MS) assays uncovered that ORMDL3 binds to ubiquitin-specific protease 10 (USP10), which forms a complex with and stabilizes RIG-I through decreasing its K48- linked ubiquitination. ORMDL3 thus disrupts the interaction between USP10 and RIG-I, thereby promoting RIG-I degradation. Additionally, subcutaneous syngeneic tumor models in C57BL/6 mice revealed that inhibition of ORMDL3 enhances anti-tumor efficacy by augmenting the proportion of cytotoxic CD8 positive T cells and IFN production in the tumor microenvironment (TME). Collectively, our findings reveal the pivotal roles of ORMDL3 in maintaining antiviral innate immune responses and anti-tumor immunity.
DOI: 10.1285/i20356609v14i3p1057
title: Tracing Social Movements' Influence Beyond Agenda-Setting: Waves of Protest, Chaining Mechanisms and Policy Outcomes in the Chilean Student Movement (2006-2018)

description: The literature on social movements' policy outcomes agrees on the need for an intertemporal perspective that goes beyond a short-term action-reaction logic to account for the effects of mobilization on policies. However, little attention has been given to the causal mechanisms that link different waves of mobilization with related policy outcomes over time. To do so, we propose the concept of chaining mechanisms as a means to connect different iterations of protest, electoral cycles and policy responses within a mid-term perspective. We distinguish between two types of chaining mechanisms, strategic and inertial, and apply this conceptual framework to the Chilean student movement in the 2006 and 2018 period. We assert that its success in chaining different waves of protest is a crucial factor in accounting for the recent major education reform that took place under Bachelet's government (2014-2018). Beyond the case, the concept contributes to the understanding of the complex interactions between social mobilization and public policy.
DOI: 10.17189/1520642
title: LRO MOON LASER ALTIMETER 4 GDR V1.0
DOI: 10.5281/zenodo.10079703
title: Ostwald_colour-atlas_reflectance-measurements

description: This repository contains the results of visible reflectance spectroscopy that have been performed on three colour atlases in the 1920s made by Verlag Unesma under the supervision of Wilhelm Ostwald. These colour atlases are currently held at the Rijksmuseum Research Library in Amsterdam under the following inventory numbers (339D32 / 339D33 and GF386G3). 
The atlases are physical representations of the colour space developed by Wilhelm Ostwald in the 1910s. They are composed of hundreds of small swatches of paint, where each one represents a specific colour and can be characterised by a hue number (ranging from F01 to F24) and a two-letter code that indicates the position of the swatch in the Ostwald colour space. 
In addition to photographs stored in the zip file, each colour swatch were measured three times with a spectrophotometer from Konica Minolta (CM-2600d), where the UV radiation had been cut-off. Subsequently, the mean and standard deviation were calculated and stored inside the Ostwald_DB.csv file. The Lab values were calculated with the help of the Colour Science python package (https://www.colour-science.org/) according to a 10° observer and a D65 illuminant.
A Jupyter notebook along with a python script have been created to help users to manipulate the data contains in the Ostwald_DB.csv file.
DOI: 10.5281/zenodo.854445
title: Supplementary Data: Ufboot2: Improving The Ultrafast Bootstrap Approximation

description: Supplementary Data<br>
UFBoot2: Improving the Ultrafast Bootstrap Approximation<br>
doi: https://doi.org/10.1101/153916<br>
http://www.biorxiv.org/content/early/2017/06/22/153916

This record contains PANDIT based dataset and TreeBASE dataset (Nguyen et al. 2015) which are analyzed by different bootstrap methods in the study "UFBoot2: Improving the Ultrafast Bootstrap Approximation". The PANDIT based dataset (compressed in file data_pandit.tar.gz) is used to benchmark the accuracy of bootstrap estimates. The TreeBASE dataset (compressed in file data_treebase.tar.gz) is used to benchmark runtimes. 

After being uncompressed, the PANDIT based dataset comprises:


	5,690 numbered directories corresponding to 5,690 DNA MSAs simulated by Seq-Gen (Rambaut and Grass 1997), where the model parameters and true tree were inferred from the original MSAs downloaded from the PANDIT database (Whelan et al. 2006). Note that the numbering of these directories is not consecutive because we kept only MSAs that can be tested under the mild and severe model violations as defined in the UFBoot paper (Minh et al. 2013).
	In each numbered directory N, there are three files: (1) data.N contains the simulated MSA in PHYLIP format; (2) model.N contains the best-fit model detected from the corresponding original MSA; (3) tree.N contains the tree (in Newick format) inferred from the corresponding original MSA. tree.N and model.N are used by Seq-Gen to simulate the MSA in data.N.


After being uncompressed, the TreeBASE dataset comprises 115 files corresponding to 115 MSAs. There are:


	70 DNA MSAs in PHYLIP format. These files follow the naming scheme dna_[number of sequences]_[number of sites].phy.
	45 protein MSAs in PHYLIP format. These files follow the naming scheme prot_[number of sequences]_[number of sites].phy.
description: {"references": ["Minh BQ, Nguyen MAT, von Haeseler A. 2013. Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 30:1188\u20131195.", "Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 32:268\u2013274.", "Rambaut A, Grass NC. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Bioinformatics 13:235\u2013238.", "Whelan S, de Bakker PIW, Quevillon E, Rodriguez N, Goldman N. 2006. PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. Nucleic Acids Res. 34:D327\u2013D331."]}
DOI: 10.6084/m9.figshare.12575978
title: Incident data base for event based surveillance

description: At the Robert Koch Institute, Berlin, Germany, the Information Centre for International Health Protection (https://www.rki.de/EN/Content/Institute/DepartmentsUnits/ZIG/INIG/INIG_node.html) is one among other units to perform event based surveillance. Their routine tasks include reading online articles from a defines set of sources, evaluating them for their relevance, and then filling their result into this table. This table only shows the mandatory tables of the year 2018. These columns were used in https://doi.org/10.1101/19006395.<br>