cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vy883wdb5w.1
title: Data for: "ESCREVIVÊNCIA: O CANSATIVO PROCESSO DE SER UMA OUTSIDER INTERNA NA PÓS-GRADUAÇÃO" published by RAC-Revista de Administração Contemporânea

description: In this text, I reflect on the exhaustive process and the deep discomfort of becoming an outsider within the Business Administration postgraduate course. Throughout the text, I expose knowledge related to Conceição Evaristo’s writing (or escrevivências).
Thus, based on this guiding thread, I promote the rescue of memory, orality, stories, and trajectories based on a diasporic phenomenon originating in the figure of “Mãe Preta” (or Black Mother). Moreover, I combine black feminist authors with the debate to reflect on the intersections in the memories exposed in autobiographical narratives. My observations are also shaped by the exposure to the concept of the outsider within, reflecting experiences of less powerful groups that face paradigmatic thoughts of a more robust community of insiders.
Worth highlighting, this article uses the “escrevivências” based on Conceição Evaristo to revisit memories. Thus, the data explored starts from the imaginary and reveals biographical information. In this way, the article employs an autobiography to delve into the experiences and perspectives of black women. For that reason, drawing from a dialogue that promotes creative works.
In that regard, there are no precise, statistical, and quantifiable materials. The reflections based on knowledge are memory, oral traditions, narratives, and life journeys. I emphasize that all these center on the symbol of the “Mãe Preta” (or Black Mother).
This approach originates from the experiences of black women. That perspective aims to dismantle historical representations. Addressing exhaustion from connecting views with black feminism was done with freewriting.
Thus, it aims to foster an epistemic resistance against oppression within various societal structures. This pursuit of the ancestral imprints embedded in memory units is the shared experiences.
The data, thus, emerge as a testament, recorded within the skin, reflecting the oppressions and suppressions faced by the black body. Through this practice, images of the past produced apathetic and voiceless identities in the face of social dynamics undone. Also, reflections, reception, and representation of all peoples I encourage, addressing not only the personal drama but the history of a community.
Finally, I articulate, through a utopian effort, possible ways for postgraduate courses in Administration to break through the obstacles experienced and raise the potential for those who are willing to contribute to the social, scientific, and theoretical development of the country.
Thus, the “escrevivências” helped to align body, condition, and experience to understand the revelation of black people. This movement enabled me to craft memories and have literary and linguistic independence.
DOI: 10.17632/9rnfjfvc8g.1
title: LONG-TERM MONITORING OF SARS-COV-2 RNA IN WASTEWATER OF THE LARGEST CITY IN SOUTHERN BRAZIL

description: Includes the epidemiological data, wastewater SARS-COV-2 quantification (.csv files), and the R code used for the analysis (.html from Rmarkdown).
DOI: 10.17632/z2zvt3s3ky.1
title: Spatial Variability of pH in Experimental Mesocosms

description: pH data was collected in experimental mesocoms (located at the Hawaii Institute of Marine Biology) with two Honeywell Durafet pH sensors. The four files are named after different dates of collection and include data for day and night sampling. Each sheet includes data for position, time, sensor voltage and pH. Any data label with "move" coordinates with the moving sensor. Any data label with "stat" coordinates with the stationary sensor. The difference between these the stationary and moving pH was utilized to evaluate the spatial variability of pH in experimental mesocosms.
DOI: 10.17632/cpyj7v99rj.1
title: dd-cfDNA and GEP in heart-transplantation

description: Our research hypothesis is that matched results from the Prospera™ and AlloSure® donor derived cell-free DNA assays intended to detect acute rejection in single-organ heart transplant patients correlate with each other. Each unique UCSD ID represents an individual single-organ heart transplant patient who received an endomyocardial biopsy at UC San Diego Health between October 2020 and January 2022. A unique "De-identified Sample ID" is assigned to each Prospera™ sample which were collected at the time of biopsy, and matched to an AlloSure® (dd-cfDNA) and AlloMap® (gene expression profiling) sample at most 14 days prior to the biopsy where applicable. The results of the dd-cfDNA assays are provided as a donor fraction percentage and the AlloMap® results are provided as a score from 0-40. We were able to determine that statistically significant correlation existed between the results of the two assays using logistic regression. Using mixed-effects logistic regression, we observed that a subject's demographic characteristics were also important co-predictors of AR when using AlloSure® and Prospera™ results as the primary predictor. Future clinical outcomes data are also provided for each sample, with a positive value indicating that the outcome was noted in UC San Diego Health medical records since the initial sample collection. Future de-novo DSA outcomes were also collected from medical records for each sample but were not included in the "Combined Future Outcomes" column as de-novo DSA is not considered to be a clinical event by itself.
DOI: 10.17632/p39y3mdh6n.3
title: Groundwater-dependent ecosystems at risk

description: This dataset relates to the publication: "Groundwater-dependent ecosystems at risk – global hotspot analysis and implications" (Environmental Research Letters). It provides the key results and processed input data of this work. The results relate to a global screening analyisis on potentials for groundwater-dependent ecosystems and associated risks due to human groundwater abstraction. Nine key indicators capture GDE potentials and associated risks on a global grid at a spatial resolution of 0.5°. Full details of the work can be found in the associated publication.
DOI: 10.17632/xmhtd2mtks.1
title: Flow cytometry CGA datasets

description: All data related with the flow cytometry experiments.
DOI: 10.17632/xmhtd2mtks.2
title: Flow cytometry CGA datasets

description: All data related with the flow cytometry experiments.
DOI: 10.17632/9vym2hsrpx
title: Temperature behavior repetitive movements

description: Study related to the temperature behavior of operators who work with repetitive movements in order to know how their hands recover after performing their work activities. The temperatures recorded are the maximum and minimum temperatures on the back and palm of the hand and on the back. Demographic data and vital and somatometric signs are observed.
DOI: 10.17632/9vym2hsrpx.1
title: Temperature behavior repetitive movements

description: Study related to the temperature behavior of operators who work with repetitive movements in order to know how their hands recover after performing their work activities. The temperatures recorded are the maximum and minimum temperatures on the back and palm of the hand and on the back. Demographic data and vital and somatometric signs are observed.
DOI: 10.17632/fss67tz8w8.1
title: Segmented Vegetation-Density Drone Dataset for Peatland Vegetation Classification

description: Vegetation Density of Peatland Drone dataset consists of 3 density classes namely bare, softly grazed and heavily grazed. The images were taken in The Liang Anggang Protection Forest Block I in Banjarbaru, South Kalimantan, Indonesia. an area of 479 hectares of block 1 area which is filled with land such as agriculture, plantations, roads and settlements and an area of 494 hectares full of weeds. In addition, the location is also categorized as peat land. The location, especially in block 1, fulfils the characteristics and suitability of the need for data collection for land cover classification in terms of the type of vegetation density that can be seen with the human eye during observations and surveys.

Bare/un-grazed typically consists of dry shrubs, soil, water, and settlements, while heavily grazed typically consists of vegetation that has a density between 15 and 30 meters. Meanwhile, softly grazed typically consists of shrubs that are 5 to 6 meters apart and fresh shrubs up to a maximum of 3 meters.

Image capture was carried out from November - December 2021 using DJI Mavic Pro drone.The resolution of the acquired image is 4000 x 3000 pixel with total of 300 images, each corresponding class have 100 images and its segmentation label.
DOI: 10.17632/cfm5xhhj4w.1
title: LDHU3_08.0490

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/hkp2pgzp3h.1
title: LDHU3_08.0510

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/b8k5swh5vg.1
title: LDHU3_08.0460

description: GOLGIN-like protein; Leishmania donovani (HU3 strain)
DOI: 10.25345/c56w96n2q
title: MassIVE MSV000096896 - Identification of new interactors of eIF3f by endogenous proximity-dependent biotin labelling in human muscle cells
title: Regulation of protein synthesis plays a central role in maintaining skeletal muscle integrity and its understanding is important for treatment of muscular and neuromuscular pathologies. eIF3f is one of the subunits of the translation initiation factor eIF3, having an important regulatory potential. Activity of eIF3f stands at the crossroads between protein synthesis associated hypertrophy and MAFbx/atrogin-1 dependent atrophy in skeletal muscle cells. To date our mechanistic knowledge of eIF3f stems from contradictory studies highlighting its functional divergence in different cell types. To decipher the molecular mechanisms underpinning the role of eIF3f in regulating muscle mass, we established a cellular model to interrogate eIF3f functionality based on proximal interaction network identification. We generated a muscle cell line stably expressing eIF3f fused to the mutated BirA biotin ligase, allowing the irreversible labelling of the interactors of eIF3f in a nanometer range distance. Biotinylated proteins interacting with eIF3f were identified by streptavidin pulldowns and mass spectrometry. We successfully designed a functional eIF3f-BirA(BioID1) chimeric protein and validated its ability to interact with the core eIF3 complex upon transient expression in HEK293 cells. We used CRISPR-Cas9 molecular scissors to generate single cell clones of immortalized human muscle cells expressing the eIF3f-BioID1 chimera in place of the endogenous EIF3F locus. Irrespective of the proliferating or differentiated muscle cell states, we found that endogenously expressed eIF3f-BioID1 chimera mainly interacts with components of the eIF3 complex such as eIF3a/b/cl (c-like)/e, and eIF4E, eIF4G, and eIF5 initiation factors, and co-sediments with ribosomal complexes in polysome profiles. Surprisingly, we identified several nuclear localized interactors of eIF3f, which, together with immunofluorescence analyses, indicates a previously unknown nuclear localization of eIF3f in both myoblasts and myotubes. Further, we identified several novel cytoplasmic binding partners of eIF3f, responsible for the maintenance of cytoplasmic skeletal muscle ultrastructure such as sarcomeric/Z-disc (SYNPO2) bound proteins and proteins of the lysosomal compartment such as LAMP1. We describe here the establishment of an endogenous molecular tagging system for the translation initiation factor eIF3f, unravel its core proximal interactors in skeletal muscle cells, and validate LAMP1 as a new binding partner. We believe this cell line will be used to decipher eIF3f function in hypertrophic and atrophic conditions in skeletal muscle.
DOI: 10.15468/dl.xhdm52
title: Occurrence Download

description: A dataset containing 11120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Ficus L."
 ]
}

 The dataset includes 11120 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004312-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rjxmmmvbvs.1
title: Two-year spawning migration as a life history strategy of sea trout

description: Abstract

In this study we used radio-telemetry derived data of riverine movements and spawning migration behaviour of wild sea trout tagged in a large, northern Baltic Sea river system, the Tornionjoki River. Tracking results indicate that both immature and mature trout utilize the freshwater environments for overwintering, and that previous spawning experience and age of tagged individuals were important for the maturation likelihood and subsequent direction of migration (mature spawners migrated upstream, immature fish returned to sea). The results indicate that the population has adopted a two-year spawning migration cycle, where individuals overwinter in-river both pre- and post-spawning. The prolonged freshwater stay of sea trout migrants needs to be taken into consideration in management to ensure adequate protection of both immature and mature sea trout. 

General information

Title of Dataset: Two-year spawning migration as a life history strategy of sea trout (Salmo trutta L.)
DOI: doi: 10.17632/rjxmmmvbvs.1

Contact Information: 
Principal Investigator Contact Information Name: Linus Lähteenmäki 
Institution: Åbo Akademi University Address: Aurum, Henriksgatan 2–20520 Åbo, Finland, Email: linus.lahteenmaki@abo.fi, ORCID:https://orcid.org/0000-0002-3931-3595

Date of data collection (approximate date): 01-04-2018 - 31-12-2021
Geographic location of data collection: Tornionjoki River system (65°46 N, 24°07 E)

Information about funding sources that supported the collection of the data: This study was funded by the Lapland´s Centre for Economic Development, Transport and the Environment, the Finnish–Swedish Transboundary River Commission, the Swedish Agency for Marine and Water Management, Natural Resources Institute Finland, Kempestiftelserna, Swedish University of Agricultural Science, Åbo Akademi University and Svenska Kulturfonden.

Recommended citation for this dataset: Lähteenmäki, L., Huusko, R., Hellström, G., Snickars, M., & Romakkaniemi, A. (in prep.) Data from: Two-year spawning migration as a life history strategy of sea trout (Salmo trutta L.) in large, high latitude river systems. Mendeley Data, V1, doi: 10.17632/rjxmmmvbvs.1. 

All datasets used in the data analysis and generation of the visualizations for this study are provided in this repository. Please view the "READ ME" file For more detailed information on dataset contents
DOI: 10.17632/4y5x75jtft.1
title: Comparative assessment of genotyping-by-sequencing and whole-exome sequencing for estimating genetic diversity and geographic structure in natural jaguar populations

description: Abstract
Biologists currently have an assortment of high-throughput sequencing techniques allowing the study of population dynamics in increasing detail. The utility of genetic estimates depends on their ability to recover meaningful approximations while filtering out noise produced by artifacts. In this study, we empirically compared the congruence of two reduced representation approaches (genotyping-by-sequencing, GBS, and whole-exome sequencing, WES) in estimating genetic diversity and population structure using SNP markers typed in a small number of wild jaguar (Panthera onca) samples from South America. Due to its targeted nature, WES allowed for a more straightforward reconstruction of loci compared to GBS, facilitating the identification of true polymorphisms across individuals. We therefore used WES-derived metrics as a benchmark against which GBS-derived indicators were compared, adjusting parameters for locus assembly and SNP filtering in the latter. We observed significant variation in SNP call rates across samples in GBS datasets, leading to a recurrent miscalling of heterozygous sites. This issue was further amplified by small sample sizes, ultimately impacting the consistency of summary statistics between genotyping methods. Recognizing that the genetic markers obtained from GBS and WES are intrinsically different due to varying evolutionary pressures, particularly selection, we consider that our empirical comparison offers valuable insights and highlights critical considerations for estimating population genetic attributes using reduced representation datasets. Our results emphasize the critical need for careful evaluation of missing data and stringent filtering to achieve reliable estimates of genetic diversity and differentiation in elusive wildlife species.

Description
This dataset comprises seven subsets of SNPs generated using the populations module in Stacks.

Keywords genetic diversity; genotyping-by-sequencing; exome capture; population structure; reduced-
representation genome sequencing; single nucleotide polymorphism
DOI: 10.17632/jk9nv3ss3k.1
title: Immigrants, Legal Status, and Illegal Trade

description: This repository contains the code and data needed to reproduce, "Immigrants, Legal Status, and Illegal Trade," to be published in the Journal of International Economics. The paper studies how immigrants and immigration policy affect illegal drug trafficking. Due to data-holder restrictions, this repository excludes Spain's EDADES dataset, though all other raw datasets are uploaded here. See the readme file below for additional information.
DOI: 10.5284/1125797
title: Data from a Watching Brief at Worden Park, Worden Lane, Leyland, Lancashire, June-July 2023

description: This collection comprises of CAD data, site records and photographs from an archaeological watching brief undertaken at Worden Park, Worden Lane, Leyland, Lancashire by Archaeological Research Services Ltd (ARS Ltd) on behalf of South Ribble Borough Council between June and July 2023.
DOI: 10.17632/p9ztm5jrjj.1
title: LDHU3_08.0600

description: Protein kinase; Leishmania donovani (HU3 strain)
DOI: 10.17632/pdc4mbbdfw.1
title: Extraction data

description: 25 L Soxhlet extraction data from AAU
DOI: 10.17632/nskb9khgsm.1
title: Multi principal element alloy (MPEA) corrosion database

description: The dataset includes information regarding the corrosion of MPEAs. It was compiled for a critical review paper submitted to Metallurgical and Materials Transactions A. Contributors to the database are different to the review paper authors, with the contributors to the database including those involved in data mining.

The dataset has been processed to allow machine learning operations. This includes encoding the phases present in each alloy, and also parsing of alloy names/compositions into their individual elemental makeup (in atomic fraction).
Input data includes alloy composition, phases, processing, test electrolyte type, test electrolyte concentration.
Output data includes corrosion potential, pitting potential, corrosion current density, and calculated passive window.
DOI: 10.17632/s8y6xyvtjm.1
title: Development of surrogate models for evaluating energy transfer quality of high-speed railway pantograph-catenary system using physics-based model and machine learning

description: The origin sample data to establish the classification models and regression models in the papers.
DOI: 10.17632/dnyw25w3xf.1
title: An experimental study of dietary conditioning on the cannibalistic preferences of Menochilus sexmaculatus Fabricius

description: The data were collected in a laboratory experiment to study the effect of dietary conditioning of the larval stages and adults on their natural prey i.e. aphids (Aphis craccivora), or the conspecific eggs for five generations. To assess whether cannibalism was affected by prior cannibalistic experiences or not, the adults of the fifth generation were provided with a choice of aphids and conspecific eggs. The time of first prey encounter and the prey (aphid/egg) first encountered along with latency to consume the prey and prey (aphid/egg) first consumed were recorded along with developmental duration and body weight of offspring across generations.
DOI: 10.17632/ng9mrrn2r7.2
title: Basilar_artery_models

description: Orginal models of the basilar artery used in the scientific article containing:

1. Dicom files of the basilar artery performed on an industrial Nikkon CT Scanner 
2. Basilar artery model in .stl format - raw model
3. Basilar artery model in .stl format - raw model extended Hounsfield scale
4. Basilar artery model prepared in Altair Inspire in .stmod format - after artery connections
5. Basilar artery model prepared in Altair Inspire in .stmod format - before artery connections
6. Basilar artery model prepared in Altair HyperMesh in .hm format - idealized case
7. Basilar artery model prepared in Altair HyperMesh in .hm format - real case
8. Basilar artery prepared in .msh.h5 format - idealized case
9. Basilar artery prepared in .msh.h5 format - real case
10. Basilar artery prepared in .msh.h5 format - hybrid case
11. The velocity curve used in the work in .txt format
12. Pressure curve used in the work in .txt format - BA outlet
13. Pressure curve used in the work in .txt format - perforators outlet 35/60 mmHg
14. Pressure curve used in the work in .txt format - perforators outlet 55/78 mmHg
15. User defined function for blood in .c format
DOI: 10.17632/ng9mrrn2r7.1
title: Basilar_artery_models

description: Orginal models of the basilar artery used in the scientific article containing:

1. Dicom files of the basilar artery performed on an industrial Nikkon CT Scanner 
2. Basilar artery model in .stl format - raw model
3. Basilar artery model in .stl format - raw model extended Hounsfield scale
4. Basilar artery model prepared in Altair Inspire in .stmod format - after artery connections
5. Basilar artery model prepared in Altair Inspire in .stmod format - before artery connections
6. Basilar artery model prepared in Altair HyperMesh in .hm format - idealized case
7. Basilar artery model prepared in Altair HyperMesh in .hm format - real case
8. Basilar artery prepared in .msh.h5 format - idealized case
9. Basilar artery prepared in .msh.h5 format - real case
10. Basilar artery prepared in .msh.h5 format - hybrid case
11. The velocity curve used in the work in .txt format
12. Pressure curve used in the work in .txt format - BA outlet
13. Pressure curve used in the work in .txt format - perforators outlet 35/60 mmHg
14. Pressure curve used in the work in .txt format - perforators outlet 55/78 mmHg
15. User defined function for blood in .c format
DOI: 10.17632/vmfhthf7jz.1
title: Dataset of prolonged symbol digit modalities test task-based fMRI contrast maps from patients with ME/CFS and health controls with sedentary lifestyles

description: We provided the dataset of neural correlates (contrast images) of the prolonged Symbol Digit Modalities Test (SDMT) from 38 patients with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) and 38 healthy controls (HCs) with sedentary lifestyles. The dataset can be used to replicate the results of the manuscript titled “Absence of functional adaptation in chronic fatigue syndrome revealed by task functional MRI.” This manuscript investigated an often-overlooked aspect of task functional MRI (tfMRI) in brain function dynamics—specifically, how tfMRI signals change over time during cognitive tasks for ME/CFS patients compared to HCs. Details of data collection and processing can be found in the manuscript. The demographic and symptom scores were provided in the spreadsheet. Four subject-level contrasts were determined:
1. con0001.nii: both task blocks (60 trials) vs rest;
2. con0002.nii: block 1 (30 trials) vs block 2 (30 trials);
3. con0003.nii: block 1 – 1st set (15 trials) vs block 1 – 2nd set;
4. con0004.nii: block 2 – 1st set vs block 2 – 2nd set.
DOI: 10.17632/kym743r9k3.1
title: LINF_310007600

description: Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Leishmania infantum (strain JPCM5)