cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10437986.v1
title: MODIFICATION OF THE SPINOPELVIC PARAMETERS WITH SURGICAL POSITIONING AND THE ROLE OF THE HIP

description: ABSTRACT Post-operative lumbar pain is related to alterations in the sagittal and spinopelvic parameters. A lumbar fusion that fails to maintain, or that worsens the physiological lordosis alters the sagittal balance. Objective: To analyze spinopelvic variation in different surgical positions. Methods: A prospective, analytical and comparative study of spinograms, lumbosacral radiographs in the surgical position over a 4-pole quadratus lumborum, and lumbosacral radiographs with quadratus lumborum and support in the knees. A sample of 129 patients, of both sexes, aged between 18 and 60 years, and presenting with lower back pain. Lumbar Lordosis (LL), Pelvic Tilt (PT), Pelvic Incidence (PI) and Sacral Slope (SS) were measured. Results: PI was the most stable parameter. With quadratus lumborum, a slight increase in PT, a decrease in SS and a significant reduction in LL were found. With quadratus lumborum and support in the knees, a decrease in PT and a slight increase in SS were found, while the LL value remained similar to that of the spinogram. Conclusion: The intraoperative position with hip flexion of between 40° and 45° over quadratus lumborum reduced LL to 10.52° in men and 16.21° in women, increased PT, and decreased SS. The intraoperative position with hip flexion of between 0° and 10° showed the same values as the reference spinogram. Level of Evidence II; Prospective comparative study.
DOI: 10.6084/m9.figshare.10437980.v1
title: Reproductive toxicity of neem seeds (Azadirachta indica) in male quail (Coturnix coturnix japonica)

description: ABSTRACT: Considering that neem (Azadirachta indica A. Juss.) causes deleterious effects on fertility, the objective was to evaluate the effect of feeding quail (Coturnix coturnix japonica Linnaeus, 1758) of 90 days old with neem seeds on seminal quality, biometric parameters, and testicular morphometrics, as an experimental model. After the 30 day adaptation period to the experimental conditions, birds were randomly distributed in five treatments of neem seeds incorporated into feed, with 10 replicates: T1 (0%), T2 (5%), T3 (10%), T4 (20%) and T5 (40%). After 60 days of receiving experimental rations, their semen was collected to evaluate the sperm quality, the birds were euthanized, and testes were submitted to biometric, histological, and histomorphometric evaluation. The data were evaluated by analysis of variance and later by Tukey test with a significance level of 5%. The mean values of testicle weight, length, and width significantly decreased in T4 and T5, due degeneration of germinal epithelial cells. In these treatments, it occurred a significant increase (P&gt;0.05) in the average values of the tunica albuginea thickness and a significant reduction in the values of the seminiferous tubule diameter and the height of the germinal epithelium. In addition, the mean values of seminal volume, sperm concentration, sperm motility, vigor, and sperm viability were significantly reduced. Thus, the use of neem in bird feeding, as well as the use for therapeutic purposes, is questionable, considering its negative impact on reproduction.
DOI: 10.6084/m9.figshare.10437962
title: THE ROLE OF DIFFUSION-WEIGHTED MRI OF PATIENTS WITH SPINE METASTASES

description: ABSTRACT Objective: The role of diffusion-weighted MRI in differential diagnostics and predicting the survival of patients with spine metastases was studied. Methods: The study included data from MRI and morphological studies of 23 patients with spine metastases. Results: The values obtained for the apparent diffusion coefficient (ADC) of tumors were compared with their histological type, cell density and Ki-67 proliferation index. The effect of ADC values on overall patient survival was also assessed. A reliable inverse correlation was established between ADC values and Ki-67 proliferation index for various types of spine metastases (r=-0.753, p=0.017). The dependence of ADC values and overall survival of patients with metastases in the spine is shown. Conclusion: The technique of diffusion-weighted MRI can be used as part of a comprehensive assessment in the preoperative planning of surgical treatment, and as a prognostic factor of overall survival for this group of patients. Level of Evidence II. Prognostic retrospective study,
DOI: 10.6084/m9.figshare.10437965
title: Water pollution: one of the main Limnology challenges in the Anthropocene

description: Abstract: Humankind is defining a new geological time. The Anthropocene epoch is marked by changes in the geological processes, hydrological regimes, biosphere structure, among other processes, due to human expansion over the landscape worldwide. Biogeochemical cycle’s acceleration, the high load of pollutants in water resources, rampant deforestation, increase in the greenhouse gas emissions to the atmosphere, eutrophication and biodiversity losses are some indications that reflect human’s pressure over several ecosystems, especially aquatic ones. Therefore, here we reviewed some aspects from a huge anthropogenic influence on ecosystems: water pollution. For decades, humankind has increasingly placed demands on aquatic environments without any concern. As an effect, lakes, rivers, and reservoirs are being globally degraded. Although the interactive effects of future anthropic processes are complex, much of current knowledge suggests that these pressures are likely to increase in magnitude and frequency over the next years. Hence, scientific results need to be articulated in an integrative perspective to expand our understanding of the aquatic resources management. The ecological knowledge generated by scientists must be applied to solve environmental problems enabling human progress sustainably. It is urgent to improve communication and understanding among different sectors of society in favor of water management. Therefore, it will be possible to ensure the preservation of natural resources for future generations by using transdisciplinary tools to understand, mitigate and recover the water resources from these anthropogenic pressures.
DOI: 10.6084/m9.figshare.10437971.v1
title: THE USE OF TITANIUM MESH FOR DEFECT CLOSURE AFTER POSTERIOR SPINAL DECOMPRESSION

description: ABSTRACT Objective: The number of revision surgical interventions for degenerative spine disorders has increased steadily. However, the formation of adhesions is one of the more serious conditions accompanying this type of surgery. There are some generally accepted options for its prevention, such as delicate surgical technique, preserving the integrity of spinal canal, and the use of different synthetic materials in the form of gels, plates and membranes to delimit the dural sac from the surrounding soft tissues. The main disadvantages of the described methods are their high cost and the need for a large volume of material in prolonged surgical interventions. Therefore, the development of new methods for prevention of adhesions formations is of paramount importance. The use of titanium mesh is, potentially, an effective and relatively cheap method of preventing the formation of adhesions in spinal surgeries. Methods: We have prospectively analyzed the outcomes of treatment of 40 patients suffering from degenerative spine disease who underwent surgical intervention with titanium mesh implantation in our department between October 2017 and December 2017. Conclusion: The results of our study led us to conclude that the use of titanium mesh enables the surgeon to delimit the dural sac in multilevel spinal decompression surgeries, contributing to closure of the defect in spinal canal and significantly reducing treatment costs. Level of evidence III; Control Case Study.
DOI: 10.6084/m9.figshare.10437959
title: SYMPTOMATIC INTRADISCAL VACUUM PHENOMENON

description: ABSTRACT Objective: Intradiscal vacuum phenomenon (IVP) is a common finding in the study of degenerative disc disease. Discogenic low back pain can be manifested in different ways, including irradiation to the lower limbs. This study aims to acknowledge the complementary studies used to diagnose IVP, determine their sensitivity, and assess the correlation between clinical and imaging findings. Methods: This is a descriptive, observational and prospective study involving clinical and imaging evaluation of 100 patients with IVP, using dynamic and plain radiographs, computed tomography and magnetic resonance imaging. The factors of analysis include sex, age, reason for consultation, visual analogue scale, irradiation and topography of the pain, the existence of sciatica and claudication, smoking status, and body mass index. Results: The overall average age of the patients was 64.6 years, who particularly evidence degenerative pathology. IVP was observed in 99 CT, 85 dynamic radiographs, 80 plain radiographs and 65 nuclear magnetic resonance images (MRI). Conclusion: The most useful studies for diagnosing the vacuum disc phenomenon are plain and dynamic radiographs, tomography, and magnetic resonance. The CT is the most sensitive imaging study for IVP detection, followed by dynamic radiographs obtained during extension. A correlation was observed between older age, overweight, and IVP. Level of evidence IV; Case-series.
DOI: 10.6084/m9.figshare.10437965.v1
title: Water pollution: one of the main Limnology challenges in the Anthropocene

description: Abstract: Humankind is defining a new geological time. The Anthropocene epoch is marked by changes in the geological processes, hydrological regimes, biosphere structure, among other processes, due to human expansion over the landscape worldwide. Biogeochemical cycle’s acceleration, the high load of pollutants in water resources, rampant deforestation, increase in the greenhouse gas emissions to the atmosphere, eutrophication and biodiversity losses are some indications that reflect human’s pressure over several ecosystems, especially aquatic ones. Therefore, here we reviewed some aspects from a huge anthropogenic influence on ecosystems: water pollution. For decades, humankind has increasingly placed demands on aquatic environments without any concern. As an effect, lakes, rivers, and reservoirs are being globally degraded. Although the interactive effects of future anthropic processes are complex, much of current knowledge suggests that these pressures are likely to increase in magnitude and frequency over the next years. Hence, scientific results need to be articulated in an integrative perspective to expand our understanding of the aquatic resources management. The ecological knowledge generated by scientists must be applied to solve environmental problems enabling human progress sustainably. It is urgent to improve communication and understanding among different sectors of society in favor of water management. Therefore, it will be possible to ensure the preservation of natural resources for future generations by using transdisciplinary tools to understand, mitigate and recover the water resources from these anthropogenic pressures.
DOI: 10.6084/m9.figshare.10437959.v1
title: SYMPTOMATIC INTRADISCAL VACUUM PHENOMENON

description: ABSTRACT Objective: Intradiscal vacuum phenomenon (IVP) is a common finding in the study of degenerative disc disease. Discogenic low back pain can be manifested in different ways, including irradiation to the lower limbs. This study aims to acknowledge the complementary studies used to diagnose IVP, determine their sensitivity, and assess the correlation between clinical and imaging findings. Methods: This is a descriptive, observational and prospective study involving clinical and imaging evaluation of 100 patients with IVP, using dynamic and plain radiographs, computed tomography and magnetic resonance imaging. The factors of analysis include sex, age, reason for consultation, visual analogue scale, irradiation and topography of the pain, the existence of sciatica and claudication, smoking status, and body mass index. Results: The overall average age of the patients was 64.6 years, who particularly evidence degenerative pathology. IVP was observed in 99 CT, 85 dynamic radiographs, 80 plain radiographs and 65 nuclear magnetic resonance images (MRI). Conclusion: The most useful studies for diagnosing the vacuum disc phenomenon are plain and dynamic radiographs, tomography, and magnetic resonance. The CT is the most sensitive imaging study for IVP detection, followed by dynamic radiographs obtained during extension. A correlation was observed between older age, overweight, and IVP. Level of evidence IV; Case-series.
DOI: 10.6084/m9.figshare.10431365
title: YPI-FINAL.xlsx

description: this data sets contains some demographic variables and three scale items， indicating with corresponding abbreviation.<br>
DOI: 10.6084/m9.figshare.10435370.v1
title: PASTMUS: mapping functional elements at single amino acid resolution in human cells

description: demo data for PASTMUS.<br>https://bitbucket.org/WeiLab/pastmus/<br><br><br>
DOI: 10.6084/m9.figshare.10431365.v1
title: YPI-FINAL.xlsx

description: this data sets contains some demographic variables and three scale items， indicating with corresponding abbreviation.<br>
DOI: 10.6084/m9.figshare.10394711
title: Bighorn sheep genomic dataset

description: High Density Ovine array genotypes for 511 bighorn sheep. Dataset was used to examine the genomic consequences of bighorn sheep translocations and population isolation, to enhance understanding of evolutionary processes that affect population genetics and inform future restoration strategies.<br>Animal capture and handling protocols were approved by Institutional Care and Use Committees at Montana State University (Permit # 2011-17, 2014-32), Montana Department of Fish, Wildlife, and Parks (Permit # 2016-005), Parks Canada (Permit # WL-2005-638), Wyoming Game and Fish Department (Permit # 854), U.S. Geological Survey (Permit # 2004-01, DINO-2008-SCI-0010), and University of Montana (Permit # 024-07MHWB-071807 and 012-16MMMCWRU-022916).<br>
DOI: 10.6084/m9.figshare.10392239
title: Alarcón-Ríos et al 2020 Evolutionary Biology, 47(1), 43-55.

description: Alarcón-Ríos et al 2019. Evolutionary History and Not Heterochronic Modiications Associated with Viviparity Drive Head Shape Diferentiation in a Reproductive Polymorphic Species, <i>Salamandra salamandra</i>. Evolutionary Biology. <i>47</i>(1), 43-55. https://doi.org/10.1007/s11692-019-09489-3<br>
DOI: 10.6084/m9.figshare.10392239.v1
title: AlarconRiosetal2019_EvolBiol

description: Alarcón-Ríos et al 2019. Evolutionary History and Not Heterochronic Modiications Associated with Viviparity Drive Head Shape Diferentiation in a Reproductive Polymorphic Species, <i>Salamandra salamandra</i>. Evolutionary Biology. https://doi.org/10.1007/s11692-019-09489-3<br>
DOI: 10.6084/m9.figshare.10381931
title: Adakite-like potassic magmatism and crust-mantle interaction in a postcollisional setting: an experimental study of melting beneath the Tibetan Plateau

description: Data associated with the publication "Adakite-like potassic magmatism and crust-mantle interaction in a postcollisional setting: an experimental study of melting beneath the Tibetan Plateau".
DOI: 10.6084/m9.figshare.10380131
title: DATA FOR: Neuronal On- and Off-type heterogeneities improve population coding of envelope signals in the presence of stimulus-induced noise

description: please unzip and look at Readme.txt<br>the dataset contains extracellular single unit recordings that were either performed non-simultaneous or simultaneous to one another in the weakly electric fish Apteronotus leptorynchus. <br><br>The RAW data has been processed, Spike times, firing metrics and stimulus metrics have been extracted and are provided in the deposited files. From there on all codes are supplied to do 2nd order analyses (i.e. spike count correlations for signal and noise response similarity or stimulus reconstruction for estimation of mutual information) to recreate the visualizations in the manuscript.
DOI: 10.6084/m9.figshare.10363292
title: Data and code from: Division of labour promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus

description: This dataset contains raw and processed data, scripts, and figures for the paper "Division of labor promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus"<br>Data, scripts, and figures are uploaded as a zip file to preserve folder structure. <br>After unzipping the dataset, you can run the entire analysis (which will start from raw data, produce all intermediate data, and plot all figures in the paper and supp. info) by executing the R script main.R through a call to source("main.R"). Note that several R libraries are required to successfully execute the scripts.
DOI: 10.6084/m9.figshare.10363292.v2
title: Data and code from: Division of labour promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus

description: This dataset contains raw and processed data, scripts, and figures for the paper "Division of labor promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus"<br>Data, scripts, and figures are uploaded as a zip file to preserve folder structure. <br>After unzipping the dataset, you can run the entire analysis (which will start from raw data, produce all intermediate data, and plot all figures in the paper and supp. info) by executing the R script main.R through a call to source("main.R"). Note that several R libraries are required to successfully execute the scripts.
DOI: 10.6084/m9.figshare.10363292.v1
title: Division of labor promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus

description: This dataset contains raw and processed data, scripts, and figures for the paper "Division of labor promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus"<br>Data, scripts, and figures are uploaded as a zip file to preserve folder structure. <br>After unzipping the dataset, you can run the entire analysis (which will start from raw data, produce all intermediate data, and plot all figures in the paper and supp. info) by executing the R script main.R through a call to source("main.R"). Note that several R libraries are required to successfully execute the scripts.
DOI: 10.6084/m9.figshare.10355465
title: Metadata record for: Pan-European groundwater to atmosphere terrestrial systems climatology from a physically consistent simulation

description: This dataset contains key characteristics about the data described in the Data Descriptor Pan-European groundwater to atmosphere terrestrial systems climatology from a physically consistent simulation. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><b><br></b>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10353731
title: Smart Contract Metrics and Deployment Costs

description: The dataset contains ethereum blockchain smart contracts written in the solidity programming language, associated structural metrics and deployment costs measured in gas.
DOI: 10.6084/m9.figshare.10355465.v2
title: Metadata record for: Pan-European groundwater to atmosphere terrestrial systems climatology from a physically consistent simulation

description: This dataset contains key characteristics about the data described in the Data Descriptor Pan-European groundwater to atmosphere terrestrial systems climatology from a physically consistent simulation. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><b><br></b>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10352375
title: Genomic epidemiology of Campylobacter jejuni associated with asymptomatic paediatric infection in the Peruvian Amazon

description: <i>Campylobacter </i>is the leading bacterial cause of gastroenteritis worldwide and its incidence is especially high in low and middle income countries (LMIC). Disease epidemiology in LMICs differs from Europe and the USA as repeated and persistent infections lead to deficits in early childhood development. In this study, we sequenced and characterized C. jejuni (n=62) from a longitudinal cohort study of children under the age of 5 with and without diarrheal symptoms, and contextualized them within a global <i>C. jejuni </i>genome collection. Epidemiological differences in disease presentation were reflected in the genomes, specifically by the absence of some of the most common global disease-causing lineages. As in many other countries, poultry-associated strains were a major source of human infection but almost half of local disease cases (15 of 31) were attributable to genotypes that are rare outside of Peru. Asymptomatic infection was not limited to a single (or few) human adapted lineages but resulted from phylogenetically divergent strains suggesting an important role for host factors in the cryptic epidemiology of campylobacteriosis in LMICs.<br>
DOI: 10.6084/m9.figshare.10352240
title: Individual Information

description: This is the master list of all individuals with their ID, sex, and enclosure. This is used to keep the individuals consistent during network generation and randoization<br>
DOI: 10.6084/m9.figshare.10352240.v1
title: Individual Information

description: This is the master list of all individuals with their ID, sex, and enclosure. This is used to keep the individuals consistent during network generation and randoization<br>
DOI: 10.6084/m9.figshare.10355465.v1
title: Metadata record for: Pan-European groundwater to atmosphere terrestrial systems climatology from a physically consistent simulation

description: This dataset contains key characteristics about the data described in the Data Descriptor Pan-European groundwater to atmosphere terrestrial systems climatology from a physically consistent simulation. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.10351379
title: GMM and Networks

description: The gaussian mixture model and network data we generated from the raw RFID data and used for the sociality measures<br>
DOI: 10.6084/m9.figshare.10353731.v1
title: Smart Contract Metrics and Deployment Costs

description: The dataset contains ethereum blockchain smart contracts written in the solidity programming language, associated structural metrics and deployment costs measured in gas.
DOI: 10.6084/m9.figshare.10351379.v1
title: GMM and Networks

description: The gaussian mixture model and network data we generated from the raw RFID data and used for the sociality measures<br>
DOI: 10.6084/m9.figshare.10347062
title: "Cooperative ordering of treadmilling filaments in cytoskeletal networks of FtsZ and its crosslinker Zap" - Source Data

description: In this work, we used an in vitro reconstitution approach to study how the well-conserved protein ZapA affects FtsZ treadmilling and filament organization into large-scale patterns. Using high-resolution fluorescence microscopy and quantitative image analysis, we found that ZapA cooperatively increases the spatial order of the filament network, but binds only transiently to FtsZ filaments and has no effect on filament length and treadmilling velocity. Together, our data provides a model for how FtsZ-associated proteins can increase the precision and stability of the bacterial cell division machinery in a switch-like manner.