cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1021698
title: Plant colonization and soil properties on newly exposed shoreline during drawdown of Lake Mead, Mojave Desert

description: Drawdown of Lake Mead from 1998 to 2011 reduced the lake's perimeter by more than 400 km while exposing more than 25,000 ha of formerly submerged land. To evaluate primary plant succession and soil properties in this new shoreline habitat, we sampled surfaces last submerged 3, 6, 9, or 13 years before sampling (including a never-submerged control) using 150, 100 m<sup>2</sup> plots at 3 sites varying in topography and soil parent material. Consistent with previous research, abundance of the exotic saltcedar (<i>Tamarix ramosissima</i>) declined with increasing surface age. Conversely, cover of native species was greatest overall on older surfaces across sites. Early successional native perennial species colonized the 13-year-old surface. Unexpectedly, multivariate soil properties did not differ between never-submerged and formerly submerged surfaces. Based on the first 13 years of plant colonization along the Lake Mead shoreline and previous research on longer term Mojave Desert vegetation succession, managers can likely anticipate (1) continued development of an early colonizing native shrubland persistent for several decades, and (2) eventual colonization by species of the mature vegetation inhabiting never-submerged surfaces. Moreover, we observed colonization of formerly submerged land by a rare plant of special conservation designation, California bearpoppy (<i>Arctomecon californica</i>), suggesting that even after many years of submersion, rare plant habitat along the Lake Mead shoreline may be reclaimed. While Lake Mead's drawdown might be viewed negatively from a perspective of maintaining full-pool water storage, it has re-exposed a vast area of new terrestrial habitat increasingly colonized by native species as invasive species abundance declines through time.
DOI: 10.6084/m9.figshare.1021647
title: CitNet Explorer

description: CitNet Explorer is a citation network visualisation tool developed at Leiden University, available here http://www.citnetexplorer.nl/Home and documented here http://arxiv.org/abs/1404.5322. In this fileset are some CitNet Explorer compatible files for one of the citation networks we used in our paper 'Transitive Reduction of citation networks', available here - http://arxiv.org/abs/1310.8224.pdf We will hopefully be adding more information to this fileset (eg. author names) soon, but the current files are enough to start visualising the networks.
DOI: 10.6084/m9.figshare.1021698.v1
title: Plant colonization and soil properties on newly exposed shoreline during drawdown of Lake Mead, Mojave Desert

description: Drawdown of Lake Mead from 1998 to 2011 reduced the lake's perimeter by more than 400 km while exposing more than 25,000 ha of formerly submerged land. To evaluate primary plant succession and soil properties in this new shoreline habitat, we sampled surfaces last submerged 3, 6, 9, or 13 years before sampling (including a never-submerged control) using 150, 100 m<sup>2</sup> plots at 3 sites varying in topography and soil parent material. Consistent with previous research, abundance of the exotic saltcedar (<i>Tamarix ramosissima</i>) declined with increasing surface age. Conversely, cover of native species was greatest overall on older surfaces across sites. Early successional native perennial species colonized the 13-year-old surface. Unexpectedly, multivariate soil properties did not differ between never-submerged and formerly submerged surfaces. Based on the first 13 years of plant colonization along the Lake Mead shoreline and previous research on longer term Mojave Desert vegetation succession, managers can likely anticipate (1) continued development of an early colonizing native shrubland persistent for several decades, and (2) eventual colonization by species of the mature vegetation inhabiting never-submerged surfaces. Moreover, we observed colonization of formerly submerged land by a rare plant of special conservation designation, California bearpoppy (<i>Arctomecon californica</i>), suggesting that even after many years of submersion, rare plant habitat along the Lake Mead shoreline may be reclaimed. While Lake Mead's drawdown might be viewed negatively from a perspective of maintaining full-pool water storage, it has re-exposed a vast area of new terrestrial habitat increasingly colonized by native species as invasive species abundance declines through time.
DOI: 10.6084/m9.figshare.1021637
title: Figures to accompany 'On Connecting Stamps - Network Analysis and Epigraphy', Nouvelles de l'archeologie 135, March 2014

description: Colour versions of the figures published in S. Graham 'On Connecting Stamps - Network Analysis and Epigraphy', Nouvelles de l'archeologie 135, March 2014 Node size is scaled to reflect PageRank scores, nodes and edges are coloured according to modularity. Figures 1 and 2 are layed out in concentric circles, based on link distance from Domitia Lucilla (in the case of figure 1) and L Publilius Celsus (in the case of figure 2. Figure 3 is layed out with the forced-atlas algorithm. All graphs visualized using Gephi.
DOI: 10.6084/m9.figshare.1021637.v1
title: Figures to accompany 'On Connecting Stamps - Network Analysis and Epigraphy', Nouvelles de l'archeologie 135, March 2014

description: Colour versions of the figures published in S. Graham 'On Connecting Stamps - Network Analysis and Epigraphy', Nouvelles de l'archeologie 135, March 2014 Node size is scaled to reflect PageRank scores, nodes and edges are coloured according to modularity. Figures 1 and 2 are layed out in concentric circles, based on link distance from Domitia Lucilla (in the case of figure 1) and L Publilius Celsus (in the case of figure 2. Figure 3 is layed out with the forced-atlas algorithm. All graphs visualized using Gephi.
DOI: 10.6084/m9.figshare.1021602
title: Annotated preferences

description: Annotated preference data used in “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014, forthcoming)
DOI: 10.6084/m9.figshare.1021603
title: Data for “Power and Fairness in a Generalized Ultimatum Game”

description: Data used in G.L. Ciampaglia, S. Lozano, D. Helbing; “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014).
DOI: 10.6084/m9.figshare.1021647.v1
title: CitNet Explorer

description: CitNet Explorer compatible citation data from the arXiv hep-th citation network- CitNet Explorer is a citation network visualisation tool available here - http://www.citnetexplorer.nl/Home, and described here - http://arxiv.org/abs/1404.5322
DOI: 10.6084/m9.figshare.1021601
title: Bargaining data

description: Data about ultimatum bargains used in “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014, forthcoming)
DOI: 10.6084/m9.figshare.1021602.v1
title: Annotated preferences

description: Annotated preference data used in “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014, forthcoming)
DOI: 10.6084/m9.figshare.1021647.v2
title: CitNet Explorer

description: CitNet Explorer is a citation network visualisation tool developed at Leiden University, available here http://www.citnetexplorer.nl/Home and documented here http://arxiv.org/abs/1404.5322. In this fileset are some CitNet Explorer compatible files for one of the citation networks we used in our paper 'Transitive Reduction of citation networks', available here - http://arxiv.org/abs/1310.8224.pdf We will hopefully be adding more information to this fileset (eg. author names) soon, but the current files are enough to start visualising the networks.
DOI: 10.6084/m9.figshare.1021509
title: Unseen horseracing data

description: The Unseen data to test the models created in "Predicting the Outcome of a Horse Race"
DOI: 10.6084/m9.figshare.1021508
title: Horseracing R code

description: The R code used to produce the models in "Predicting the Outcome of a Horse Race"
DOI: 10.6084/m9.figshare.1021506
title: Data set for the CRIMYNE-2 study on the validation of perineal nerve test to diagnose polyneuropathy and myopathy in 121 patients

description: The data show the characteristics and the outcomes of the patients enrolled in the CRIMYNE-2 study.<br>surgicalStatus: surgical status on admission (nonSurgical= non surgical, emergSurgical= emergency surgical, electSurgical= elective surgical).<br>surgicalId_neurosurg: patient undergoing neurosurgery in the 7 days preceding or in the 24 hours following ICU admission (1=yes, 0=no).<br>Trauma: admission for a recent trauma (&lt;1 week).<br>admReas: reason for admission (monitWean= monitoring/weaning, intTreat= intensive treatment).<br>neurologicalPatientAdm: patient admitted with a neurological condition on admission (1= yes, 0= no).<br>gcsAdm: Glasgow Coma Scale on admission.<br>sapsIIadm: SAPSII on admission.<br>sevInfections: severity of infection on admission (0= not infected on admission, 1=infection with or without SIRS, 2=SEVERE SEPSIS, 3=SEPTIC SHOCK).<br>maxSevInfections: maximum severity of infection during the stay (0= never infected during the stay, 1=infection with or without SIRS, 2=SEVERE SEPSIS, 3=SEPTIC SHOCK).<br>InconclusiveResult: whether the result were inconclusive or not (see STARD flowchart, 1= yes, 0= no).<br>PENT: result of the peroneal nerve electrophysiological test.<br>NCS: result of the complete nerve conduction study. EMG: result of the electromyography.
DOI: 10.6084/m9.figshare.1021509.v1
title: Unseen horseracing data

description: The Unseen data to test the models created in "Predicting the Outcome of a Horse Race"
DOI: 10.6084/m9.figshare.1021601.v2
title: Bargaining data

description: Data about ultimatum bargains used in “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014, forthcoming)
DOI: 10.6084/m9.figshare.1021505
title: Weekly prices of UK 10 year government bond

description: Weekly prices of UK 10 year government bond from January 2012 to January 2014.
DOI: 10.6084/m9.figshare.1021506.v1
title: Data set for the CRIMYNE-2 study on the validation of perineal nerve test to diagnose polyneuropathy and myopathy in 121 patients

description: The data show the characteristics and the outcomes of the patients enrolled in the CRIMYNE-2 study.<br>surgicalStatus: surgical status on admission (nonSurgical= non surgical, emergSurgical= emergency surgical, electSurgical= elective surgical).<br>surgicalId_neurosurg: patient undergoing neurosurgery in the 7 days preceding or in the 24 hours following ICU admission (1=yes, 0=no).<br>Trauma: admission for a recent trauma (&lt;1 week).<br>admReas: reason for admission (monitWean= monitoring/weaning, intTreat= intensive treatment).<br>neurologicalPatientAdm: patient admitted with a neurological condition on admission (1= yes, 0= no).<br>gcsAdm: Glasgow Coma Scale on admission.<br>sapsIIadm: SAPSII on admission.<br>sevInfections: severity of infection on admission (0= not infected on admission, 1=infection with or without SIRS, 2=SEVERE SEPSIS, 3=SEPTIC SHOCK).<br>maxSevInfections: maximum severity of infection during the stay (0= never infected during the stay, 1=infection with or without SIRS, 2=SEVERE SEPSIS, 3=SEPTIC SHOCK).<br>InconclusiveResult: whether the result were inconclusive or not (see STARD flowchart, 1= yes, 0= no).<br>PENT: result of the peroneal nerve electrophysiological test.<br>NCS: result of the complete nerve conduction study. EMG: result of the electromyography.
DOI: 10.6084/m9.figshare.1021647.v3
title: CitNet Explorer

description: CitNet Explorer is a citation network visualisation tool developed at Leiden University, available here http://www.citnetexplorer.nl/Home and documented here http://arxiv.org/abs/1404.5322. In this fileset are some CitNet Explorer compatible files for one of the citation networks we used in our paper 'Transitive Reduction of citation networks', available here - http://arxiv.org/abs/1310.8224.pdf We will hopefully be adding more information to this fileset (eg. author names) soon, but the current files are enough to start visualising the networks.
DOI: 10.6084/m9.figshare.1021500
title: Lithium silicides - unit cell parameters, volumetric and gravimetric electrochemical capacities

description: The spreadsheet lists the phases on the Li-Si binary phase diagram, together with calculated electrochemical capacities expressed relative to: 1) Mass of Si (oxidised / discharged anode) 2) Mass of x Li + y Si (reduced / charged anode) 3) Volume of Si (oxidised / discharged anode) 4) Volume of LixSiy (reduced / charged anode)
DOI: 10.6084/m9.figshare.1021503
title: Nitric and nitrous oxide fluxes following bovine urine deposition to summer-grazed pasture

description: Nitric oxide (NO) and nitrogen dioxide (NO<sub>2</sub>) emissions, referred to collectively as NO<sub>x</sub>, cause decreases in methane and increases in tropospheric ozone. The net negative radiative forcing that ensues is dependent on NO<sub>x</sub> flux magnitude, location and season. This study aimed to determine if urine–N rate affected NO<sub>x</sub> or nitrous oxide (N<sub>2</sub>O) fluxes following dairy cattle urine application to a temperate pasture soil under summer conditions (mean monthly rainfall 45 mm; mean air temperatures 17 °C, range 11–22 °C). An in situ experiment consisting of three treatments (control, bovine urine at 543 and 1086 kg N/ha) was replicated thrice in a randomised complete block design. Soil inorganic–N, pH and gas fluxes were measured over a 72 day summer period. Fluxes of NO–N in the control, 543 and 1086 kg N/ha treatments averaged 73, 328 and 341 <i>µ</i>g NO–N/m<sup>2</sup>/h. Cumulative NO–N fluxes equalled 0.15% (± 0.03) and 0.20% (± 0.06) of the urine–N applied (± SD) in the 543 and 1086 kg N/ha treatments, respectively, with no effect of urine–N rate. Cumulative N<sub>2</sub>O–N fluxes did not differ with urine–N rate equalling 0.14% (± 0.03) and 0.16% (±0.10) of the urine–N applied in the 543 and 1086 kg N/ha treatments, respectively. Under summer conditions, varying urine–N rate from 543–1086 kg N/ha had no significant effect on cumulative NO–N or N<sub>2</sub>O–N when measured over 72 days.
DOI: 10.6084/m9.figshare.1021505.v1
title: Weekly prices of UK 10 year government bond

description: Weekly prices of UK 10 year government bond from January 2012 to January 2014.
DOI: 10.6084/m9.figshare.1021601.v1
title: Bargain data

description: Data about ultimatum bargains used in “Power and Fairness in a Generalized Ultimatum Game” (PLoS One 2014, forthcoming)
DOI: 10.6084/m9.figshare.1021503.v2
title: Nitric and nitrous oxide fluxes following bovine urine deposition to summer-grazed pasture

description: Nitric oxide (NO) and nitrogen dioxide (NO<sub>2</sub>) emissions, referred to collectively as NO<sub>x</sub>, cause decreases in methane and increases in tropospheric ozone. The net negative radiative forcing that ensues is dependent on NO<sub>x</sub> flux magnitude, location and season. This study aimed to determine if urine–N rate affected NO<sub>x</sub> or nitrous oxide (N<sub>2</sub>O) fluxes following dairy cattle urine application to a temperate pasture soil under summer conditions (mean monthly rainfall 45 mm; mean air temperatures 17 °C, range 11–22 °C). An in situ experiment consisting of three treatments (control, bovine urine at 543 and 1086 kg N/ha) was replicated thrice in a randomised complete block design. Soil inorganic–N, pH and gas fluxes were measured over a 72 day summer period. Fluxes of NO–N in the control, 543 and 1086 kg N/ha treatments averaged 73, 328 and 341 <i>µ</i>g NO–N/m<sup>2</sup>/h. Cumulative NO–N fluxes equalled 0.15% (± 0.03) and 0.20% (± 0.06) of the urine–N applied (± SD) in the 543 and 1086 kg N/ha treatments, respectively, with no effect of urine–N rate. Cumulative N<sub>2</sub>O–N fluxes did not differ with urine–N rate equalling 0.14% (± 0.03) and 0.16% (±0.10) of the urine–N applied in the 543 and 1086 kg N/ha treatments, respectively. Under summer conditions, varying urine–N rate from 543–1086 kg N/ha had no significant effect on cumulative NO–N or N<sub>2</sub>O–N when measured over 72 days.
DOI: 10.6084/m9.figshare.1021500.v2
title: Lithium silicides - unit cell parameters, volumetric and gravimetric electrochemical capacities

description: The spreadsheet lists the phases on the Li-Si binary phase diagram, together with calculated electrochemical capacities expressed relative to: 1) Mass of Si (oxidised / discharged anode) 2) Mass of x Li + y Si (reduced / charged anode) 3) Volume of Si (oxidised / discharged anode) 4) Volume of LixSiy (reduced / charged anode)
DOI: 10.6084/m9.figshare.1021503.v1
title: Nitric and nitrous oxide fluxes following bovine urine deposition to summer-grazed pasture

description: Nitric oxide (NO) and nitrogen dioxide (NO<sub>2</sub>) emissions, referred to collectively as NO<sub>x</sub>, cause decreases in methane and increases in tropospheric ozone. The net negative radiative forcing that ensues is dependent on NO<sub>x</sub> flux magnitude, location and season. This study aimed to determine if urine–N rate affected NO<sub>x</sub> or nitrous oxide (N<sub>2</sub>O) fluxes following dairy cattle urine application to a temperate pasture soil under summer conditions (mean monthly rainfall 45 mm; mean air temperatures 17 °C, range 11–22 °C). An in situ experiment consisting of three treatments (control, bovine urine at 543 and 1086 kg N/ha) was replicated thrice in a randomised complete block design. Soil inorganic–N, pH and gas fluxes were measured over a 72 day summer period. Fluxes of NO–N in the control, 543 and 1086 kg N/ha treatments averaged 73, 328 and 341 <i>µ</i>g NO–N/m<sup>2</sup>/h. Cumulative NO–N fluxes equalled 0.15% (± 0.03) and 0.20% (± 0.06) of the urine–N applied (± SD) in the 543 and 1086 kg N/ha treatments, respectively, with no effect of urine–N rate. Cumulative N<sub>2</sub>O–N fluxes did not differ with urine–N rate equalling 0.14% (± 0.03) and 0.16% (±0.10) of the urine–N applied in the 543 and 1086 kg N/ha treatments, respectively. Under summer conditions, varying urine–N rate from 543–1086 kg N/ha had no significant effect on cumulative NO–N or N<sub>2</sub>O–N when measured over 72 days.
DOI: 10.6084/m9.figshare.1020524
title: Image processing using CUDA

description: Slides from a laboration on image processing using CUDA.
DOI: 10.6084/m9.figshare.1021500.v1
title: Lithium silicides - unit cell parameters, volumetric and gravimetric electrochemical capacities

description: The spreadsheet lists the phases on the Li-Si binary phase diagram, together with calculated electrochemical capacities expressed relative to: 1) Mass of Si (oxidised / discharged anode) 2) Mass of x Li + y Si (reduced / charged anode) 3) Volume of Si (oxidised / discharged anode) 4) Volume of LixSiy (reduced / charged anode)
DOI: 10.6084/m9.figshare.1020148
title: Colour figures for Campitelli and Macbeth (2014)

description: This fileset contains colour versions of the Figures 7, 8, and 11 of the article Campitelli and Macbeth (2014).
DOI: 10.6084/m9.figshare.1020148.v1
title: Colour figures for Campitelli and Macbeth (2014)

description: This fileset contains colour versions of the Figures 7, 8, and 11 of the article Campitelli and Macbeth (2014).
DOI: 10.6084/m9.figshare.1019945
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1019946
title: Tax Authorities

description: Boulder County Datasets (assessor)
DOI: 10.6084/m9.figshare.1019938
title: Gaussian Job Archive for C33H27CuI2N3P

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1019946.v1
title: Tax Authorities

description: Boulder County Datasets (assessor)
DOI: 10.6084/m9.figshare.1019906
title: Example datasets of confocal smFRET experiments in Photon-HDF5 format

description: This fileset contains freely-diffusing single-molecule FRET datasets on the Photon-HDF5 file format (http://photon-hdf5.org/). These files are also used as demo datasets for the FRETBursts burst analysis software (http://tritemio.github.io/FRETBursts). These datasets come from smFRET experiments on a us-ALEX, ns-ALEX and 8-spot smFRET setups. <strong>File format</strong> The file format is Photon-HDF5, an open binary format for single-molecule data: http://photon-hdf5.org/ <strong>Dataset description</strong> Currently, two datasets are published: the first is a single-spot usALEX dataset and the second one is an 8-spot smFRET with single laser excitation. <strong>usALEX: '0023uLRpitc_NTP_20dT_0.5GndCl.hdf5'</strong> This dataset is a usALEX measurement of 20dt ssDNA oligos doubly labeled with Cy3B and Atto647N. The excitation laser frequencies are 523nm and 635nm. The objective lens is a 1.2NA Olympus water immersion lens. The 2 detectors are both Perkin Elmer (now Excelitas) single-pixel SPADs. <strong>8-spot smFRET: '12d_New_30p_320mW_steer_3.hdf5'</strong> This dataset is a smFRET measurement performed on a 8-spot smFRET system employing a single laser excitation (8ps pulsed, 532nm). The setup is an 8 excitation spots smFRET setup employing 2 8-pixel SPAD arrays fabricated in custom technology by the SPADLab group at Politecnico di Milano (Italy). The 8 excitation spots are generated by an LCOS-SLM and focused in the sample with an water immersion NA 1.2 Olympus lens. The sample is 40 base-pairs dsDNA oligo doubly labeled with ATTO550 and ATTO647N. The base-pair separation between the dyes is 12 base-pairs.
DOI: 10.6084/m9.figshare.1019902
title: Effect of different heterotrophic plate count methods on the composition of culturable microbial community

description: Heterotrophic plate counts (HPC) are routinely determined within the scope of water quality<br>assessment. However, variable HPC methods with different cultivation conditions are applied.<br>These variabilities can have a significant effect on the outcome of the analysis, particularly with<br>regard to the composition of culturable microbial community. This was demonstrated by testing<br>commonly used low and high incubation temperatures (22 and 37°C) as well as high and low<br>nutrient media (yeast extract agar and R2A). The culturable microbial community composition was<br>investigated by 16S rRNA gene sequencing and additional statistical analysis (ANOVA permutation<br>test on CCA and PERMANOVA). Lower temperature(22°C) showed the abundance of naturally<br>occurring Pseudomonadaceae and Aeromonadaceae, whereas at high temperature (37°C)<br>numerous Enterobacteriaceae and Bacilli were identified. The highest biodiversity was detected at<br>lower temperature, especially on R2A medium. The most significant effect of tested cultivation<br>conditions was assigned to temperature (p &lt; 0.01), although media also affected the abundance of<br>certain detected bacteria (as seen in the number of operational taxonomic units). These results<br>endorse the supposition that different temperatures (low and high) should be included into HPC<br>measurement, whereas the selection of media should take into account the monitored water<br>source itself. Accordingly it can be inferred that the HPC method is more suitable for continuous<br>monitoring of water quality than for single assessments.
DOI: 10.6084/m9.figshare.1019903
title: NCBI Taxonomy Newick v.1 - 5.1.2014

description: NCBI taxonomy constructed as a single newick file. This file was built using the names.dmp and nodes.dmp files availabe from the NCBI ftp site on 5.1.2014.
DOI: 10.6084/m9.figshare.1019941.v1
title: DTI analysis in patients with primary open-angle glaucoma: impact of registration on voxel-wise statistics

description: DTI analysis in patients with primary open-angle glaucoma: impact of registration on voxel-wise statistics