cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18627403
title: Beyond the Nutrient Paradigm:Thermal Intensity and Duration Trigger Opposite Phytoplankton Responses to Marine Heatwaves Research Code and Data

description: Overview

This repository contains MATLAB scripts for data processing, statistical analysis, and figure generation for a research paper: Beyond the Nutrient Paradigm:Thermal Intensity and Duration Trigger Opposite Phytoplankton Responses to Marine Heatwaves Research .Coverage includes:



Multi-source data preprocessing and grid harmonization

MHW event detection and metric calculation

Trend analysis and significance testing

Chlorophyll-a anomaly analysis and its relationship with MHWs

Driver attribution analysis (atmospheric vs oceanic)

Regional and global comparative figures

Intermediate run-time outputs (.mat)


Main Scripts



A_data_reshape.m: preprocesses SST, Chl-a, heat flux, MLD, nitrate, and harmonizes grids.

B_MHW_detect_plot.m: reads MHW detection outputs, computes seasonal properties, and generates spatial plots.

C_MHW_trend.m: analyzes interannual and spatial trends of key MHW metrics.

D_Chl_anomaly_calculate.m: computes Chl-a climatology and anomalies (with/without MHW), and produces validation figures.

E_Chl_analysis.m: analyzes relationships between Chl-a anomalies and MHW intensity/duration/environmental factors.

F_causes.m: performs MHW driver attribution and plotting analysis of MHW properties.

G_global_analysis.m: global-scale analysis figures.

H_event_threshold.m: sensitivity comparison under different event-threshold schemes.


Utility Functions



isbetw.m: interval filtering helper.

Mann_Kendall.m: Mann-Kendall trend significance test.

density2C.m: scatter density estimation and color mapping.


Data and Intermediate Results

The repository includes part of the intermediate outputs and figures (e.g., *.mat, *.png).Note: several scripts use absolute paths (e.g., E:/Data/...). Please update paths for your local environment before reproduction.

Recommended Execution Order



A_data_reshape.m

B_MHW_detect_plot.m

C_MHW_trend.m

D_Chl_anomaly_calculate.m

E_Chl_analysis.m

F_causes.m

G_global_analysis.m

H_event_threshold.m


Suggested Environment



MATLAB R2023b or newer (recommended)

Depends on m_map-related and other third-party plotting functions (e.g., m_proj, m_pcolor, m_gshhs, nclCM), which can be installed from MathWorks resources

Statistics Toolbox functions are used (e.g., fitlm, ttest2, corrcoef)


Notes



Some scripts are set to load saved intermediate outputs by default. For full recomputation, uncomment relevant sections and prepare source data.

In-situ measurement datasets are not uploaded; please contact the corresponding author by email.
DOI: 10.5281/zenodo.18627404
title: Beyond the Nutrient Paradigm:Thermal Intensity and Duration Trigger Opposite Phytoplankton Responses to Marine Heatwaves Research Code and Data

description: Overview

This repository contains MATLAB scripts for data processing, statistical analysis, and figure generation for a research paper: Beyond the Nutrient Paradigm:Thermal Intensity and Duration Trigger Opposite Phytoplankton Responses to Marine Heatwaves Research .Coverage includes:



Multi-source data preprocessing and grid harmonization

MHW event detection and metric calculation

Trend analysis and significance testing

Chlorophyll-a anomaly analysis and its relationship with MHWs

Driver attribution analysis (atmospheric vs oceanic)

Regional and global comparative figures

Intermediate run-time outputs (.mat)


Main Scripts



A_data_reshape.m: preprocesses SST, Chl-a, heat flux, MLD, nitrate, and harmonizes grids.

B_MHW_detect_plot.m: reads MHW detection outputs, computes seasonal properties, and generates spatial plots.

C_MHW_trend.m: analyzes interannual and spatial trends of key MHW metrics.

D_Chl_anomaly_calculate.m: computes Chl-a climatology and anomalies (with/without MHW), and produces validation figures.

E_Chl_analysis.m: analyzes relationships between Chl-a anomalies and MHW intensity/duration/environmental factors.

F_causes.m: performs MHW driver attribution and plotting analysis of MHW properties.

G_global_analysis.m: global-scale analysis figures.

H_event_threshold.m: sensitivity comparison under different event-threshold schemes.


Utility Functions



isbetw.m: interval filtering helper.

Mann_Kendall.m: Mann-Kendall trend significance test.

density2C.m: scatter density estimation and color mapping.


Data and Intermediate Results

The repository includes part of the intermediate outputs and figures (e.g., *.mat, *.png).Note: several scripts use absolute paths (e.g., E:/Data/...). Please update paths for your local environment before reproduction.

Recommended Execution Order



A_data_reshape.m

B_MHW_detect_plot.m

C_MHW_trend.m

D_Chl_anomaly_calculate.m

E_Chl_analysis.m

F_causes.m

G_global_analysis.m

H_event_threshold.m


Suggested Environment



MATLAB R2023b or newer (recommended)

Depends on m_map-related and other third-party plotting functions (e.g., m_proj, m_pcolor, m_gshhs, nclCM), which can be installed from MathWorks resources

Statistics Toolbox functions are used (e.g., fitlm, ttest2, corrcoef)


Notes



Some scripts are set to load saved intermediate outputs by default. For full recomputation, uncomment relevant sections and prepare source data.

In-situ measurement datasets are not uploaded; please contact the corresponding author by email.
DOI: 10.15468/dl.n629z3
title: Occurrence Download

description: A dataset containing 7522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "TaxonKey is Hyla arenicolor"
 ]
}

 The dataset includes 7522 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014135-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hujkzt
title: Occurrence Download

description: A dataset containing 337828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-128.94 35.54,-110.89 35.54,-110.89 39.75,-128.94 39.75,-128.94 35.54))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 337828 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014011-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qq9jxc
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Eragrostis polytricha"
 ]
}

 The dataset includes 472 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014136-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgaa5d
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ochrolechia gowardii",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014138-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tb5uh3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polyspora elliptica",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014139-260208012135463/datasets/export for details.
DOI: 10.15468/e34af9
title: Records by Russell Miller

description: Records by Russell Miller. Those from Lady Gilbert's orchard were from a survey organized by the Orchard Project. Records from Wood Farm and Pear Wood were during one day courses run by HNCF at which Russell taught.
DOI: 10.15468/knth5m
title: Fern records for Stanmore Common and Stanmore Country Park from Howard Matthews for the period 2012 through 2014

description: Fern records for Stanmore Common and Stanmore Country Park in Harrow, London from Howard Matthews for the period 2012 through 2014. Howard was a keen amateur fern expert with a deep knowledge of fern distributions in Harrow.
DOI: 10.15468/29du68
title: Records from Harrow by Russell Miller, mostly insects, 2015 through 2020

description: Records by Huma Pearce, professional ecologist. Her company is "Mostly Bats".
Records from Harrow by Russell Miller, an expert on ancient woodlands and natural history in general. The majority are from an Orchard Project funded survey of Lady Gilbert's Orchard in Old Redding; most of the rest are from practical courses on Pollinators and Deadwood Invertebrates that Russell ran as part of an HNCF “Nurturing Nature Enthusiasm” practical course. Mostly insects but also two fungi and one snail.
DOI: 10.15468/7z4972
title: Peter Peretti’s bird records for winter 2018 in Bentley Priory, Harrow, London

description: A set of bird records from Bentley Priory, Harrow, London for the January and February 2018 by Peter Peretti, volunteer warden of the site and keen birdwatcher. All but two are from a handwritten list Peter gave me in June 2018; records 188 and 204 were told me over the phone on 14th January 2018.
DOI: 10.15468/hatsrx
title: Census of singing birds at Bentley Priory

description: During a census of singing birds at Bentley Priory on a single day in May 2011 by Fay Broome and Peter Peretti, highly experienced amateur ornithologists
DOI: 10.15468/xwyac7
title: Records from Harrow, London by Margaret Huitson 2014-2022, mainly from Stanmore Country Park where she is volunteer assistant warden

description: Records from Harrow, London by Margaret Huitson 2014-2022, mainly from Stanmore Country Park where she is volunteer assistant warden. Margaret is an amateur expert on butterflies and flowering plants.
DOI: 10.15468/pxnzb4
title: Records 2004-2022 by Rosemary Etheridge

description: Records by Rosemary Etheridge, an extremely knowledgable and reliable local amateur naturalist.
Records 2004-2022 by Rosemary Etheridge, a skilled amateur naturalist specializing in bryophytes, lichens and fungi but also expert in other groups. Mostly from Pear Wood, where Rosemary is warden, but also from other nature reserves in Harrow, London.
DOI: 10.15468/yd936j
title: Moth and butterfly records for sites in Harrow, London by John Hollingdale 2012-2019

description: Moth and butterfly records for sites in Harrow, London by John Hollingdale 2012-2019. John was a keen amateur moth expert and volunteer warden of Stanmore Country Park, from where the majority of these records come. Most of these records are from light traps at Stanmore Country Park and other nature reserves in Harrow.
DOI: 10.15468/4tn5w6
title: Plant records by Denis Vickers
DOI: 10.15468/dl.pbvrdp
title: Occurrence Download

description: A dataset containing 2165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schizolobium parahyba",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 2165 records from 233 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014140-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2heezn
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Squalus mitsukurii"
 ]
}

 The dataset includes 689 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014141-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knad6v
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anablepsoides ornatus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 106 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014142-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekyzax
title: Occurrence Download

description: A dataset containing 56936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyprinella lutrensis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 56936 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014063-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ec4zz
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rauvolfia verticillata",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1472 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014144-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud73hz
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ochrolechia juvenalis",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014143-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ddzma
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachycorythis conica transvaalensis"
 ]
}

 The dataset includes 98 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014145-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84z9uv
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Eragrostis porosa"
 ]
}

 The dataset includes 426 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014146-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9p9bw
title: Occurrence Download

description: A dataset containing 3945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna pallida",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 3945 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014147-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbnpge
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anablepsoides ottonii",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014148-260208012135463/datasets/export for details.
DOI: 10.5281/zenodo.15191440
title: KP RedCarpet Heatmaps

description: Klebsiella pneumoniae RedCarpet heatmaps

chunks 1, 2, 3, 4, 10, 11
DOI: 10.5281/zenodo.15191441
title: KP RedCarpet Heatmaps

description: Klebsiella pneumoniae RedCarpet heatmaps

chunks 1, 2, 3, 4, 10, 11
DOI: 10.15468/dl.g9w5k3
title: Occurrence Download

description: A dataset containing 22428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pimephales vigilax",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 22428 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014149-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfkeuz
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ochrolechia alboflavescens",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 114 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014150-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31330258
title: <b>Phylogenetic or functional community dispersions do not translate into demographic benefits or costs</b>

description: Despite strong theoretical expectations, empirical evidence linking plant community structure to demographic performance remains limited. In this study, we examine how multiple facets of phylogenetic and functional community structure relate to the community-level population growth rate (λ) of <i>Securidaca longepedunculata</i>, a tropical medicinal plant of ecological and conservation importance. To this end, we integrated demographic data with plant community metrics, as well as data on herbivory, harvesting pressure, and environmental data. Using a structural equation modelling framework, we assessed the effects of these variables on λ. Our results show that environmental variables consistently predict herbivory, while different components of phylogenetic structure have contrasting effects on functional diversity and plant-herbivore interactions. Contrary to prevailing assumptions, none of the community structure metrics directly influenced λ, challenging simple biodiversity-demography linkages in plant communities. Collectively, our study offers new insights into how different facets of phylogenetic structure may have contrasting ecological consequences and reveals that that community dispersions do not translate into demographic benefits or costs for <i>S. longepedunculata</i>.
DOI: 10.6084/m9.figshare.31330258.v1
title: <b>Phylogenetic or functional community dispersions do not translate into demographic benefits or costs</b>

description: Despite strong theoretical expectations, empirical evidence linking plant community structure to demographic performance remains limited. In this study, we examine how multiple facets of phylogenetic and functional community structure relate to the community-level population growth rate (λ) of <i>Securidaca longepedunculata</i>, a tropical medicinal plant of ecological and conservation importance. To this end, we integrated demographic data with plant community metrics, as well as data on herbivory, harvesting pressure, and environmental data. Using a structural equation modelling framework, we assessed the effects of these variables on λ. Our results show that environmental variables consistently predict herbivory, while different components of phylogenetic structure have contrasting effects on functional diversity and plant-herbivore interactions. Contrary to prevailing assumptions, none of the community structure metrics directly influenced λ, challenging simple biodiversity-demography linkages in plant communities. Collectively, our study offers new insights into how different facets of phylogenetic structure may have contrasting ecological consequences and reveals that that community dispersions do not translate into demographic benefits or costs for <i>S. longepedunculata</i>.
DOI: 10.15468/dl.b32wnn
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarcandra glabra brachystachys",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 350 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014151-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9jzfq
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Serjania paniculata",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 187 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014152-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.