cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pg4f4qrt1
title: Data from: Agroecological measures in meadows promote honey bee colony development and winter survival

description: The homogenization of agricultural landscapes has led to a decrease in
 pollinator diversity and abundance. In response to this decline, farmers
 have implemented agroecological measures, which, in meadows, aim at
 providing more floral resources. These measures are the availability of
 unmown floral strips, delayed mowing, and discouraging the use of the
 conditioner, a device known to harm insects. The aim of our study was to
 investigate the cascade of effects of these agroecological measures on
 honey bee colony development and winter survival. We (i) determined the
 effect of these measures on colony size during the nectar and pollen
 collecting season in spring and summer, (ii) evaluated the effect of
 spring and summer colony sizes on autumn size, and (iii) described the
 effect of colony size in autumn on winter mortality. In this study, 300
 honey bee colonies were monitored over three years in three cantons of
 Switzerland. Colony size was defined by the number of brood cells and
 adult workers, Honey bee colony size in summer and autumn were improved by
 agroecological measures on meadows and likely contributed to the increased
 overwintering success. This study is a first step towards the targeted
 identification of viable agroecological measures on temporary meadows that
 can be implemented to promote honey bee colonies' health in the
 agricultural landscape.
DOI: 10.15468/dl.ccred5
title: Occurrence Download

description: A dataset containing 1129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, Pl@ntNet automatically identified occurrences, Données Oiseaux des Jardins, Inventaire de la flore de Charente-Maritime 2012-2020-Inventaire de la flore de Charente-Maritime 2021, Parc naturel régional du Marais poitevin-Inventaire des gorgebleue à miroir, Inventaire et spatialisation des enjeux floristiques sur la Communauté d'Agglomération de la Rochelle-Inventaire et spatialisation des enjeux floristiques de la Communauté d'Agglomération de la Rochelle, Données LPO Réserves Naturelles Nationales - Données des réserves naturelles nationales co-gérées par la Ligue pour la protection des oiseaux (LPO) et l'Office français de la biodiversité (OFB), RNF | Ichtyofaune Prés salés, socle commun (Espaces protégés de la LPO France et de l'OFB) - RNF Prés salés - Biométrie de l'ichtyofaune relâchée | RNN Baie de l'Aiguillon, Parc naturel régional du Marais poitevin-Réactualisation des ZNIEFF, Comptage décadaires oiseaux d'eau des Espaces protégés (LPO France) - Comptage décadaires | RNN Baie de l'Aiguillon)",
 "Geometry POLYGON((-1.15758 46.38061,-1.23417 46.35789,-1.27815 46.25601,-1.21328 46.21716,-1.10297 46.21386,-1.05313 46.30695,-1.07768 46.35826,-1.15758 46.38061))",
 "IucnRedListCategory is one of (CR, EN, VU, EW, EX)",
 "OccurrenceStatus is Present",
 "Year 2015-2026"
 ]
}

 The dataset includes 1129 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003220-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ncjsxksz3
title: Cross-generational stressors affect telomeres and survival in house sparrows

description: Parental stress often has long-term consequences for offspring.
  However, the mechanisms underlying these effects and how they
 are shaped by conditions offspring subsequently experience are poorly
 understood.  Telomeres, which often shorten in response to stress
 and predict longevity, may contribute to, and/or reflect these
 cross-generational effects.  Traditionally, parental stress is
 expected to have negative effects on offspring telomeres, but experimental
 studies in captive animals suggest that these effects may depend on the
 subsequent conditions that offspring experience.  Yet, the degree
 to which parental stress influences and interacts with stress experienced
 by offspring to affect offspring telomeres and survival in free-living
 organisms is unknown.  To assess this, we experimentally
 manipulated the stress exposure of free-living parent and offspring house
 sparrows (Passer domesticus).  We found a weak, initial, negative
 effect of parental stress on offspring telomeres, but this effect was no
 longer evident at the end of post-natal development.  Instead,
 the effects of parental stress depended on the natural sources of stress
 that offspring experienced during post-natal development whereby some
 outcomes were improved under more stressful rearing conditions.
  Thus, the effects of parental stress on offspring telomeres and
 survival are context-dependent and may involve compensatory mechanisms of
 potential benefit under some circumstances.
description: dataset provided as .csv and .xlsx created in Excel and was
 analyzed in R
DOI: 10.15468/dl.naedkx
title: Occurrence Download

description: A dataset containing 909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ITA.16_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Aquilegia"
 ]
}

 The dataset includes 909 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003221-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.44j0zpchc
title: Numerical data from: Gasotransmitter modulation of hypoglossal motoneuron activity

description: Using the rhythmic brainstem slice preparation, which contains the
 preBötzinger complex (preBötC) and the hypoglossal nucleus, we tested the
 hypothesis that central HO-2 dysregulation weakens hypoglossal motoneuron
 output. Disrupting HO-2 activity increased transmission failure as
 determined by the intermittent inability of the preBötC rhythm to trigger
 output from the hypoglossal nucleus.  Failed transmission was
 associated with a reduced input-output relationship between the preBötC
 and the motor nucleus.  These network phenomena were related to
 smaller inspiratory drive currents and reduced intrinsic excitability
 among hypoglossal neurons. In addition to HO-2, hypoglossal neurons also
 expressed the CO-regulated H2S producing enzyme cystathionine ϒ-lyase
 (CSE). H2S abundance was higher in hypoglossal neurons of HO-2 null mice
 than wild-type controls. Disrupting CSE function normalized transmission
 in HO-2 null mice and an H2S donor mimicked the effects of HO-2
 dysregulation. These findings demonstrate a hitherto uncharacterized
 modulation of hypoglossal activity through the interaction of HO‑2 and
 CSE-derived H2S, and supports the perspective that centrally derived HO-2
 activity plays an important role regulating upper airway control. This
 archived dataset contains the numerical data used to generate the figures
 in the preprint titled:  Gasotransmitter Modulation of
 Hypoglossal Motoneuron Activity by Brigitte Browe, Ying-Jie Peng, Jayasri
 Nanduri, Nanduri R. Prabhakar, and Alfredo J. Garcia III. This report can
 be found at
 https://www.biorxiv.org/content/10.1101/2022.03.23.485481. 
description: These data were collected from electrophysiological
 measurements.  Data was analyzed posthoc using CLAMPFIT, a part of the
 pCLAMP software suite (Molecular Devices).  Numerical values were
 generated using spreadsheet calculations in Excel (Microsoft). The
 resulting values were aggregated in a single summary file for each
 figure.  
description: Data is archived in a Microsoft Excel format.
DOI: 10.5061/dryad.jq2bvq8ch
title: Raw RADseq data for: Population genomics analysis with RAD, reprised: Stacks 2

description: Restriction enzymes have been one of the primary tools in the population
 genetics toolkit for 50 years, being coupled with each new generation of
 technology to provide a more detailed view into the genetics of natural
 populations. Restriction site-Associated DNA protocols, which joined
 enzymes with short-read sequencing technology, have democratized the field
 of population genomics, providing a means to assay the underlying alleles
 in scores of populations. More than 10 years on, the technique has been
 widely applied across the tree of life and served as the basis for many
 different analysis techniques. Here, we provide a detailed protocol to
 conduct a RAD analysis from experimental design to de novo
 analysis—including parameter optimization—as well as reference-based
 analysis, all in Stacks version 2, which is designed to work with
 paired-end reads to assemble RAD loci up to 1000 nucleotides in length.
 The protocol focuses on major points of friction in the molecular
 approaches and downstream analysis, with special attention given to
 validating experimental analyses. Finally, the protocol provides several
 points of departure for further analysis.
description: RADseq dataset from two populations of the Patagonian blenny
 (<em>Eleginops maclovinus</em>). This fish species is native
 to the coastal regions of southern South America and is an outgroup to the
 cold-specialized radiation of Antarctic notothenioid fish (Chen et al.
 2019). Sixty individuals from two populations in southern Chile
 (Valdivia <em>n</em> = 37, Puerto Natales
 <em>n</em> = 23) were processed into a single-digest RAD
 library (Baird et
 al. 2008; Etter et
 al. 2012) generated using the RE <em>SbfI</em>. The
 library was sequenced (2 × 150 bp) on a single lane of an Illumina
 NovaSeq6000 at the Roy J. Carver Biotechnology Center sequencing facility
 at the University of Illinois, Urbana-Champaign.
description: Files are a pair of gzipped FASTQ files containing raw Illumuna
 sequencing reads. Can be processed with standard bioinformatic
 software.
DOI: 10.6078/d1km61
title: Data for: Diversiﬁcation models conﬂate likelihood and prior, and cannot be compared using conventional model-comparison tools

description: Time-calibrated phylogenetic trees are a tremendously powerful tool for
 studying evolutionary, eco-logical, and epidemiological phenomena. Such
 trees are predominantly inferred in a Bayesian framework, with the
 phylogeny itself treated as a parameter with a prior distribution (a “tree
 prior”). However, we show that the tree “parameter” consists, in part, of
 data, in the form of taxon samples. Treating the tree as a parameter fails
 to account for these data and compromises our ability to compare among
 models using standard techniques (e.g., marginal likelihoods estimated
 using path-sampling and stepping-stone sampling algorithms). Since
 accuracy of the inferred phylogeny strongly depends on how well the tree
 prior approximates the true diversification process that gave rise to the
 tree, the inability to accurately compare competing tree priors has broad
 implica- tions for applications based on time-calibrated trees. We outline
 potential remedies to this problem, and provide guidance for researchers
 interested in assessing the fit of tree models.
DOI: 10.5061/dryad.69p8cz94w
title: Hoverfly (Eristalis tenax) pursuit of artificial targets

description: The ability to visualize small moving objects is vital for the survival of
 many animals, as these could represent predators or prey. For example,
 predatory insects, including dragonflies, robber flies and killer flies,
 perform elegant, high-speed pursuits of both biological and artificial
 targets. Many non-predatory insects, including male hoverflies and
 blowflies, also pursue targets during territorial or courtship
 interactions. To date, most hoverfly pursuits have been studied outdoors.
 To investigate hoverfly (Eristalis tenax) pursuits under more controlled
 settings, we constructed an indoor arena that was large enough to
 encourage naturalistic behavior. We presented artificial beads of
 different sizes, moving at different speeds, and filmed pursuits with two
 cameras, allowing subsequent 3D reconstruction of the hoverfly and bead
 position as a function of time. We show that male E. tenax hoverflies are
 unlikely to use strict heuristic rules based on angular size or speed to
 determine when to start pursuit, at least in our indoor setting. We found
 that hoverflies pursued faster beads when the trajectory involved flying
 downwards towards the bead. Furthermore, we show that target pursuit
 behavior can be broken down into two stages. In the first stage, the
 hoverfly attempts to rapidly decreases the distance to the target by
 intercepting it at high speed. During the second stage, the
 hoverfly's forward speed is correlated with the speed of the bead, so
 that the hoverfly remains close, but without catching it. This may be
 similar to dragonfly shadowing behavior, previously coined ‘motion
 camouflage’.
description: The methods are described in detail in the paper. See also the
 attached README file.
description: We used Prism 9 (GraphPad
 Software Inc., San Diego, CA, USA) and Matlab (R2019b, The MathWorks,
 Inc., Natick, MA, USA) for data analysis. All scripts are
 provided.
DOI: 10.5061/dryad.qjq2bvqk5
title: Clonal functional traits favor the invasive success of alien plants into native communities

description: Functional traits are frequently proposed to determine the invasiveness of
 alien species. However, few empirical studies have directly manipulated
 functional traits and tested their importance in the invasion success of
 alien species into native plant communities, particularly under global
 change. We manipulated clonal integration (a key clonal functional trait)
 of four alien clonal plants by severing inter-ramet connections or keeping
 them intact, and simulated their invasion into native plant communities
 with two levels of species diversity, population density and nutrient
 availability. High community diversity and density impeded the invasion
 success of the alien clonal plants. Clonal integration of the alien plants
 promoted their invasion success, particularly in the low-density
 communities associated with low species diversity or nutrient addition,
 which resulted in a negative correlation between performance of alien
 plants and native communities, as expected under global change. Thus,
 clonal integration can favor the invasion success of alien clonal plants
 into degraded resident communities with a high degree of disturbance and
 eutrophication. Our findings confirm the role of clonal functional traits
 in facilitating alien plant invasions into native plant communities, and
 suggest that clonal functional traits should be considered to efficiently
 restore degraded communities heavily invaded by alien clonal plants.
DOI: 10.5061/dryad.41ns1rnhr
title: Data for: Improving routine childhood immunisation outcomes in low- and middle-income countries: An evidence gap map

description: Objective: To support evidence-informed decision-making, we created an
 evidence gap map (EGM) to characterise the evidence base on the
 effectiveness of interventions in improving routine childhood immunisation
 outcomes in low- and middle-income countries (LMICs). Methods: We
 developed an intervention-outcome matrix with 38 interventions and 43
 outcomes. We searched academic databases and grey literature sources for
 relevant impact evaluations (IEs) and systematic reviews (SRs). Search
 results were screened on title/abstract. Those included in the
 title/abstract were retrieved for a full review. Studies meeting the
 eligibility criteria were included and data were extracted for each
 included study. All screening and data extraction was done by two
 independent reviewers. We analysed these data to identify trends in the
 geographic distribution of evidence, the concentration of evidence across
 intervention and outcome categories, and attention to vulnerable
 populations in the literature. Results: We identified 309 studies,
 comprising 226 completed IEs, 58 completed SRs, 24 ongoing IEs, and 1
 ongoing SR. Evidence from IEs is heavily concentrated in a handful of
 countries in Sub- Saharan Africa and South Asia. Among interventions, the
 most frequently evaluated are those related to education and material
 incentives for caregivers or health workers. There are gaps in the study
 of non-material incentives and outreach to vulnerable populations. Among
 outcomes, those related to vaccine coverage and health are well covered.
 However, evidence on intermediate outcomes related to health system
 capacity or barriers faced by caregivers is much more limited.
 Conclusions: There is valuable evidence available to decision-makers for
 use in identifying and deploying effective strategies to increase routine
 immunisation in LMICs. However, additional research is needed to address
 gaps in the evidence base.
description: These data were manually extracted by trained reviewers from
 published research reports.
description: This is a spreadsheet that can be opened in Microsoft Excel,
 Google Sheets, OpenOffice Calc, or LibreOffice Calc.
DOI: 10.15468/dl.6qw9z3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((25.705074393449333 41.39997989589776, 25.707252991576496 41.40854581320889, 25.707170308568706 41.41726732174552, 25.70482847752306 41.425809252303225, 25.700316533961445 41.433843166762344, 25.693807140584973 41.44106000657379, 25.685550063263257 41.4471820183449, 25.675862631899506 41.45197349083896, 25.665117543606065 41.45524988115962, 25.653728477120374 41.45688496903914, 25.64213408086515 41.45681575476189, 25.63078096746881 41.455044905259705, 25.620106390973937 41.45164065054498, 25.610521296890393 41.446734134626986, 25.602394418887215 41.440514326849794, 25.59603805021067 41.43322069667788, 25.591696045478958 41.425133943091275, 25.58953451337535 41.41656514521897, 25.589635548054332 41.407843760629575, 25.591994222548145 41.39930493965776, 25.596518937075988 41.39127664701753, 25.60303508467276 41.38406708538785, 25.611291871196432 41.377952900124825, 25.620972011010206 41.37316861095015, 25.63170391707075 41.36989766716437, 25.643075917516242 41.36826545984874, 25.654651962077484 41.36833455017861, 25.665988232010044 41.37010229009204, 25.67665003753942 41.37350092298388, 25.686228377419287 41.3784001607174, 25.694355546243305 41.38461214198667, 25.700719206485438 41.39189858884209, 25.705074393449333 41.39997989589776))",
 "KingdomKey is one of (Animalia, Fungi, Plantae)",
 "Year is one of (2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025, 2026)",
 "Modified is greater than or equal to 2026-01-27"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003223-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.m905qfv4c
title: Data from: Sexual selection, feather wear, and time constraints on the pre-basic molt explain the acquisition of the pre-alternate molt in European passerines

description: Avian feathers need to be replaced periodically to fulfill their
 functions, with natural, social, and sexual selection presumably driving
 the evolution of molting strategies. In temperate birds, a common pattern
 is to molt feathers immediately after the breeding season, the pre-basic
 molt. However, some species undergo another molt in winter-spring, the
 pre-alternate molt. Using a sample of 188 European passerine species,
 Bayesian phylogenetic mixed models, and correlated evolution analyses, we
 tested whether the occurrence of the pre-alternate molt was positively
 associated with proxies for sexual selection (sexual selection hypothesis)
 and non-sexual social selection (social selection hypothesis) and with
 factors related to feather wear (feather wear hypothesis) and time
 constraints on the pre-basic molt (time constraints hypothesis). We found
 that the pre-alternate molt was more frequent in migratory and less
 gregarious species inhabiting open/xeric habitats and feeding on the wing,
 and marginally more frequent in species with strong sexual selection and
 those showing a winter territorial behavior. Moreover, an increase in
 migratory behavior and sexual selection intensity preceded the acquisition
 of the pre-alternate molt. These results provide support for the feather
 wear hypothesis, partial support for the sexual selection and time
 constraints hypotheses, and no support for the social selection
 hypothesis.
DOI: 10.5517/ccqf149
title: CCDC 667930: Experimental Crystal Structure Determination

description: Related Article: M.Trzebiatowska-Gusowska, A.Gagor, J.Baran, M.Drozd|2009|J.Raman Spectrosc.|40|315|doi:10.1002/jrs.2127
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6086/d1p40n
title: Summer marine fog distribution in the Chukchi–Beaufort Seas

description: We study the spatial and temporal variability of summer marine fog in the
 Chukchi–Beaufort region (175°E–150°W, 70°N–86°N) using the in-situ
 visibility measurements aboard the Chinese research fleet Xuelong (I and
 II) and a fog product we derive using the Vertical Feature Mask product of
 the spaceborne CALIPSO observations. The Xuelong in-situ observations show
 that the fog frequency in the Chukchi–Beaufort region has a maximum of
 ~18% in the early morning and is less than 10% in the rest of the day. The
 latitudinal distribution of the Xuelong-based in-situ fog frequency
 further shows high fog occurrences at 74°N and 79°N, which are related to
 the local high fog occurrences near 72°N–74°N and 76°N–80°N in the central
 Chukchi–Beaufort region, as revealed by the longitude-latitude pattern of
 the CALIPSO-based spaceborne fog frequency distribution. The CALIPSO-based
 fog frequency is also shown to be lower along the continental coastlines
 than in the Chukchi–Beaufort region. This longitude-latitude distribution
 may be explained by a reduced fog formation due to the Pacific warm
 current flowing into the Arctic region through the Bering Strait in the
 summer as well as an enhanced fog formation in the Chukchi–Beaufort region
 when the southward flow of the Beaufort Gyre interacts with the Pacific
 warm current.
description: The data was originally obtained freely from https://www.chinare.org.cn/en/metadata/c381eed1-0fe0-4efd-a4ab-4f099cf2c6ad.  The dataset archived on Dryad is a subset of measurements used in the published article (doi:10.1029/2021EA002049).
description: The dataset archived on Dryad are tabulated ASCII files.  The
 dataset can be read using an ASCII text editor.