cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a8jh9g
title: Occurrence Download

description: A dataset containing 3330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Psittacara frontatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3330 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024175-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gmredm
title: Occurrence Download

description: A dataset containing 4412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anser anser",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4412 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024176-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej3wvz
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trimeresurus stejnegeri",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 478 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024179-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7419087
title: Active gas seepage in western Spitsbergen fjords, Svalbard archipelago: spatial extent and geological controls

description: The following digital data package is provided as part of the submission of the publication Rodes et al. (2023) Active gas seepage in western Spitsbergen fjords, Svalbard archipelago: spatial extent and geological controls, considered for publication in the journal Frontiers in Earth Science. The dataset contains the distribution and characteristics of the gas flares observed during the HE-449 cruise in 2015 and the GASGEM cruise in 2021. Moreover, it contains the interpreted outcropping areas of the geological units in Isfjorden and Van Mijenfjorden. Each dataset is provided in GeoJSON, Geopackage and Shapefile file extensions. Finally, we provide a minimal working example to calculate the flare density per multibeam area of outcropping geological units.
DOI: 10.5281/zenodo.7822180
title: Active gas seepage in western Spitsbergen fjords, Svalbard archipelago: spatial extent and geological controls

description: The following digital data package is provided as part of the submission of the publication Rodes et al. (2023) Active gas seepage in western Spitsbergen fjords, Svalbard archipelago: spatial extent and geological controls, considered for publication in the journal Frontiers in Earth Science. The dataset contains the distribution and characteristics of the gas flares observed during the HE-449 cruise in 2015 and the GASGEM cruise in 2021. Moreover, it contains the interpreted outcropping areas of the geological units in Isfjorden and Van Mijenfjorden. Each dataset is provided in GeoJSON, Geopackage and Shapefile file extensions. Finally, we provide a minimal working example to calculate the flare density per multibeam area of outcropping geological units.
DOI: 10.5281/zenodo.16758219
title: O/N2 ratio

description: The data repository contains the O/N2 ratio data of 26-30 May 2017 obtained from TIMED/GUVI satellite.
DOI: 10.5281/zenodo.16758220
title: O/N2 ratio

description: The data repository contains the O/N2 ratio data of 26-30 May 2017 obtained from TIMED/GUVI satellite.
DOI: 10.15468/dl.3pzxbu
title: Occurrence Download

description: A dataset containing 313479 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Turdus leucomelas)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 313479 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024151-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8ebyk
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wendlandia nervosa"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024180-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16758296
title: Blueprint Set 5: Kakushin Structural Theory – Core Structures (6) & Auxiliary Frameworks (4)
title: NBP5:核信構造論 基本6+補助4 セット

description: This PDF contains Blueprint Set 5 of the Kakushin Structural Theory, compiling the six core structural definitions of the Thought Operating System (SQ, FQ, mindflight cognition, etc.) and four auxiliary frameworks that support the system's continuity and implementation.The set includes both the original core preprints (NBP1) and additional documents defining structure shards, environmental design, structural tension, and everyday cognition.All blueprints are formatted in Blueprint v2.0, making them reusable, structurally integrated, and readable by AI systems and philosophical readers alike.

本PDFは、核信構造論における思想OSの基本構造6柱(構造的知性、飛翔認知、核信、思想六面体、構造圧、構造反応)と、それを支える補助構造4本(記憶断片、構造環境、圧の再定義、日常的跳躍)を一体化したNBP5です。これにより、思想OSが単なる概念ではなく、社会や対話の中で機能するための稼働インフラセットが完成します。全ての文書はBlueprint ver.2.0形式で設計され、AI読解・再起動・教育応用に対応した構造を持ちます。
DOI: 10.5281/zenodo.16758297
title: Blueprint Set 5: Kakushin Structural Theory – Core Structures (6) & Auxiliary Frameworks (4)
title: NBP5:核信構造論 基本6+補助4 セット

description: This PDF contains Blueprint Set 5 of the Kakushin Structural Theory, compiling the six core structural definitions of the Thought Operating System (SQ, FQ, mindflight cognition, etc.) and four auxiliary frameworks that support the system's continuity and implementation.The set includes both the original core preprints (NBP1) and additional documents defining structure shards, environmental design, structural tension, and everyday cognition.All blueprints are formatted in Blueprint v2.0, making them reusable, structurally integrated, and readable by AI systems and philosophical readers alike.

本PDFは、核信構造論における思想OSの基本構造6柱(構造的知性、飛翔認知、核信、思想六面体、構造圧、構造反応)と、それを支える補助構造4本(記憶断片、構造環境、圧の再定義、日常的跳躍)を一体化したNBP5です。これにより、思想OSが単なる概念ではなく、社会や対話の中で機能するための稼働インフラセットが完成します。全ての文書はBlueprint ver.2.0形式で設計され、AI読解・再起動・教育応用に対応した構造を持ちます。
DOI: 10.15468/dl.kucy5v
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anser anser",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024181-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9n24qa
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anablepsoides xinguensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024184-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hsd3p
title: Occurrence Download

description: A dataset containing 33293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Psittacara holochlorus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 33293 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024183-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29850293
title: KEGG Functional Annotation of Dokdonia sp. Dokd-P16 (Whole Genome)

description: This dataset provides KEGG-based functional annotation for the complete genome of <i>Dokdonia sp.</i> Dokd-P16, a marine bacterium. The genome was annotated using the KEGG Automatic Annotation Server (KAAS) with the BBH (bi-directional best hit) method in August 2025.The dataset includes:Protein sequences from RAST (<code>.faa</code>)KO assignment file from KAAS (<code>.rtf</code>)Pathway mapping file (<code>.keg</code>)iPath statistical export (<code>.csv</code>)A README file describing the methodThis data supports research in marine microbiology and genomics. It may also be reused in comparative genomics, pathway reconstruction, and metagenomic analysis.
DOI: 10.6084/m9.figshare.29850293.v1
title: KEGG Functional Annotation of Dokdonia sp. Dokd-P16 (Whole Genome)

description: This dataset provides KEGG-based functional annotation for the complete genome of <i>Dokdonia sp.</i> Dokd-P16, a marine bacterium. The genome was annotated using the KEGG Automatic Annotation Server (KAAS) with the BBH (bi-directional best hit) method in August 2025.The dataset includes:Protein sequences from RAST (<code>.faa</code>)KO assignment file from KAAS (<code>.rtf</code>)Pathway mapping file (<code>.keg</code>)iPath statistical export (<code>.csv</code>)A README file describing the methodThis data supports research in marine microbiology and genomics. It may also be reused in comparative genomics, pathway reconstruction, and metagenomic analysis.
DOI: 10.15468/dl.2jwz25
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gonyosoma frenatum",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 43 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024186-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnjr3k
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypomasticus pachycheilus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 40 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024189-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc20tl5m
title: CCDC 1871630: Experimental Crystal Structure Determination

description: Related Article: Ivan A. Sherstobitov, Stanislav A. Kiselev, Alex A. Lyapkov, Mekhman S. Yusubov, Viktor V. Zhdankin, Bao-Yi Yu, Francis Verpoort|2021|Tetrahedron Lett.|84|153451|doi:10.1016/j.tetlet.2021.153451
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ws8qhy
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tenualosa ilisha"
 ]
}

 The dataset includes 537 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024187-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jb4aqj
title: Occurrence Download

description: A dataset containing 11011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anser anser",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11011 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024185-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fann9h
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Wendlandia philippinensis"
 ]
}

 The dataset includes 15 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024190-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyjv82
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Turdus leucomelas)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024191-250802193616735/datasets/export for details.
DOI: 10.15468/dl.tc7pk8
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Elaphe taeniura",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 308 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024192-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3cs4v
title: Occurrence Download

description: A dataset containing 15018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.05573 -26.74711,28.20268 -26.74711,28.2008 -26.61645,28.05573 -26.6162,28.05573 -26.74711))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 15018 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024193-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5j62xt
title: Occurrence Download

description: A dataset containing 57075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Psittacara erythrogenys)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 57075 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024168-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22b8tm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Typhlobelus guacamaya)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024194-250802193616735/datasets/export for details.
DOI: 10.5281/zenodo.16757292
title: Vibrio spp. specific hsp60 reference database for DADA2

description: Vibrio spp. specific groEL/groL/cpn60/hsp60 reference database, formatted for use with the 'assignTaxonomy' function of the DADA2 pipeline.

 




File
Description


King2019_DADA2.fasta
Reference dataset as described by https://doi.org/10.17605/OSF.IO/4798P, but formatted for use by DADA2.


full2025_DADA2_all.fasta


Full hsp60 sequences of Vibrio spp. taken from Vibrio NCBI RefSeq genomes, with these criteria:



Refseq annotated, excludes atypical genomes & metagenome assembled genomes

N50 > 50kb

Taxonomy check == "OK"

>90% completion; <10% contamination

Suppressed RefSeq files removed




full2025_DADA2_nosp.fasta
Same as above, but excluding those without a species name (i.e. excluding 'Vibrio sp. xxx' where xxx is the strain identifier).


hsp60_all_refs.tsv
Details of the full2025 hsp sequences (accession number, species, strain)
DOI: 10.5281/zenodo.16757293
title: Vibrio spp. specific hsp60 reference database for DADA2

description: Vibrio spp. specific groEL/groL/cpn60/hsp60 reference database, formatted for use with the 'assignTaxonomy' function of the DADA2 pipeline.

 




File
Description


King2019_DADA2.fasta
Reference dataset as described by https://doi.org/10.17605/OSF.IO/4798P, but formatted for use by DADA2.


full2025_DADA2_all.fasta


Full hsp60 sequences of Vibrio spp. taken from Vibrio NCBI RefSeq genomes, with these criteria:



Refseq annotated, excludes atypical genomes & metagenome assembled genomes

N50 > 50kb

Taxonomy check == "OK"

>90% completion; <10% contamination

Suppressed RefSeq files removed




full2025_DADA2_nosp.fasta
Same as above, but excluding those without a species name (i.e. excluding 'Vibrio sp. xxx' where xxx is the strain identifier).


hsp60_all_refs.tsv
Details of the full2025 hsp sequences (accession number, species, strain)
DOI: 10.15468/dl.xxsm6p
title: Occurrence Download

description: A dataset containing 7734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anser anser",
 "Country is Switzerland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7734 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024195-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32bd3n
title: Occurrence Download

description: A dataset containing 754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Coereba flaveola)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 754 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024197-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnvy7s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Coereba flaveola)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024196-250802193616735/datasets/export for details.
DOI: 10.5281/zenodo.16758526
title: Blueprint Set 6: The Birth of Thought & Thought OS – Phase 2 (6 Modules)
title: NBP6:思想誕生&思想OSフェーズ2・6本セット

description: This PDF contains Blueprint Set 6 of the Kakushin Structural Theory, completing Phase 2 of the Thought Operating System.The set presents six modules that guide the structural birth of thought, core belief (FQ) extraction, development of structural intelligence (SQ), design of dialogic OS, and a full model of AI-human co-creation.The final preprint (2025-46) integrates these into a complete theory of implementable thought, transforming philosophy into a social technology.All preprints follow Blueprint v2.0 format, enabling high structural resolution and AI-readability.

本PDFは、思想OSのフェーズ2(Phase 2)=思想の誕生・育成・協創・社会実装を扱う6本のプレプリントを収録したNBP6です。思想が構造として発火し(2025-41)、FQとして抽出され(42)、SQとして育まれ(43)、対話という構造環境で循環し(44)、AIと構造分業され(45)、ついに**「実装可能な知性技術」**として統合されます(46)。これらはすべてBlueprint ver.2.0形式で記述されており、思想を「再起動できる構造」として未来へ継承するための記録体となっています。