cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b495hq
title: Occurrence Download

description: A dataset containing 486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-116.19666 12.41512,-80.80334 12.41512,-80.80334 26.58488,-116.19666 26.58488,-116.19666 12.41512))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lysiloma tergeminum"
 ]
}

 The dataset includes 486 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046780-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15461873
title: Raw data supporting "Candida auris infected zebrafish larvae gives an insight on the virulence factor of the C. auris with aggregate forming phenotype"

description: This dataset contains the raw data and figures associated with a study investigating the virulence characteristics of various Candida auris strains using the zebrafish infection model. Specifically, it includes:





Figure 1: Survival curves of zebrafish embryos infected with different C. auris strains over a 96-hour period, compared to a mock control.




Figure 2: Quantitative analysis of fungal burden (CFU/mL) within zebrafish embryos infected with five C. auris strains at multiple timepoints.




Figure 3: Assessment of biofilm formation by Candida species. (A) Metabolic activity measured via XTT assay at 24 and 48 hours. (B) Biomass quantification using crystal violet staining at the same timepoints. C. albicans ATCC 90028 was used as a positive control.




Figure 7: Evaluation of chitin content in the cell walls of C. auris strains through Calcofluor White staining and confocal microscopy, including quantification of fluorescence intensity.




Supplementary Table 1: Enzymatic activity profiles (phospholipase, proteinase, hemolysin) of five C. auris strains, compared with C. albicans ATCC 90028, highlighting their virulence-associated hydrolytic enzyme production.



All experiments were independently performed in biological triplicates. The dataset supports the findings presented in the manuscript submitted to Virulence and may be useful for researchers studying fungal pathogenesis and host-pathogen interactions in vivo.
DOI: 10.5281/zenodo.15461874
title: Raw data supporting "Candida auris infected zebrafish larvae gives an insight on the virulence factor of the C. auris with aggregate forming phenotype"

description: This dataset contains the raw data and figures associated with a study investigating the virulence characteristics of various Candida auris strains using the zebrafish infection model. Specifically, it includes:





Figure 1: Survival curves of zebrafish embryos infected with different C. auris strains over a 96-hour period, compared to a mock control.




Figure 2: Quantitative analysis of fungal burden (CFU/mL) within zebrafish embryos infected with five C. auris strains at multiple timepoints.




Figure 3: Assessment of biofilm formation by Candida species. (A) Metabolic activity measured via XTT assay at 24 and 48 hours. (B) Biomass quantification using crystal violet staining at the same timepoints. C. albicans ATCC 90028 was used as a positive control.




Figure 7: Evaluation of chitin content in the cell walls of C. auris strains through Calcofluor White staining and confocal microscopy, including quantification of fluorescence intensity.




Supplementary Table 1: Enzymatic activity profiles (phospholipase, proteinase, hemolysin) of five C. auris strains, compared with C. albicans ATCC 90028, highlighting their virulence-associated hydrolytic enzyme production.



All experiments were independently performed in biological triplicates. The dataset supports the findings presented in the manuscript submitted to Virulence and may be useful for researchers studying fungal pathogenesis and host-pathogen interactions in vivo.
DOI: 10.15468/dl.rz43qm
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buxus sempervirens",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048752-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4x3pwj
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus strumicae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 38 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048754-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45kr6d
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buxus sempervirens",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048755-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9u2ctx
title: Occurrence Download

description: A dataset containing 132542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-08-01",
 "EventDate is less than or equal to 2025-08-31",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 132542 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048731-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z2fep8
title: Occurrence Download

description: A dataset containing 16613 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((108.0307 -3.242807, 110.9095 -3.242807, 110.9095 -0.9367197, 108.0307 -0.9367197, 108.0307 -3.242807))"
 ]
}

 The dataset includes 16613 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013390-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7931/dl1-coll37-28
title: Liming and manurial experiments on Stoke soils
DOI: 10.7931/dl1-coll37-29
title: The conversion of Pakihi into dairy pasture
DOI: 10.15468/dl.mw6at9
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.45378 42.436,1.38507 42.32137,1.51952 42.24737,1.80924 42.32929,1.96153 42.35539,2.01273 42.38843,1.97573 42.4687,1.6804 42.52684,1.45378 42.436))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Mustela lutreola, Mustela putorius, Neomys fodiens, Neomys anomalus, Neomys milleri, Galemys pyrenaicus, Arvicola sapidus)"
 ]
}

 The dataset includes 145 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000324-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7931/dl1-coll37-30
title: Cobalt status of soils and pastures in the Sherry and Wangapeka Districts, Nelson
DOI: 10.7931/dl1-coll37-32
title: Cobalt in soil and its uptake by plants
DOI: 10.5281/zenodo.15859029
title: Supporting Files (Part 2) for "The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

description: Overview

These files include Part 2 of the ROMS model input files that were used to create the figures in the following paper:

"The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

by Brianna Undzis, Julia M. Moriarty, Emily F. Eidam, Irina Overeem

which is published in JGR Oceans. 

Input Files

Model input files for the model described in the peer-reviewed publication:



Boundary & Climatology Files: 



salt_bry_001.nc

temp_bry_001.nc

temp_clm_001.nc
DOI: 10.5281/zenodo.15859030
title: Supporting Files (Part 2) for "The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

description: Overview

These files include Part 2 of the ROMS model input files that were used to create the figures in the following paper:

"The Influence of Wave Events on Open Water Suspended Sediment Fluxes on the Alaskan Beaufort Sea Shelf: A Numerical Modeling Study"

by Brianna Undzis, Julia M. Moriarty, Emily F. Eidam, Irina Overeem

which is published in JGR Oceans. 

Input Files

Model input files for the model described in the peer-reviewed publication:



Boundary & Climatology Files: 



salt_bry_001.nc

temp_bry_001.nc

temp_clm_001.nc
DOI: 10.7931/dl1-coll37-33
title: Fertiliser requirements of Waimea County soils
DOI: 10.7931/dl1-coll37-34
title: Soil deficiencies in New Zealand. The Liversidge Lecture.
DOI: 10.7931/dl1-coll37-35
title: Soil phosphate studies, Part I: Solubility of soil phosphate and fixation of added phosphate at varying pH values
DOI: 10.7931/dl1-coll37-36
title: Soil phosphate studies, Part II: Fixation of phosphate by R2O3 oxides in sodium and calcium clays
DOI: 10.7931/dl1-coll37-37
title: Soil phosphate studies, Part III: Extraction of phosphoric acid by acid solutions
DOI: 10.7931/dl1-coll37-39
title: The manuring of Nelson pastures
DOI: 10.7931/dl1-coll37-40
title: Effect of sulphate of ammonia on the exchangeable base status of a pasture soils
DOI: 10.7931/dl1-coll37-41
title: The importance of the depth of soil sampling in studies relating to the mineral content of pastures
DOI: 10.7931/dl1-coll37-42
title: Serpentine and dunite as magnesium fertiliser
DOI: 10.7931/dl1-coll37-43
title: Role of science in the development of New Zealand agriculture
DOI: 10.7931/dl1-coll37-44
title: Soil treatment for Nelson tomato-houses
DOI: 10.7931/dl1-coll37-45
title: The phosphate status of Ashburton soils
DOI: 10.7931/dl1-coll37-46
title: Colorimetric determination of cobalt in soils and animal organs
DOI: 10.7931/dl1-coll37-47
title: Cobalt status of New Zealand soils
DOI: 10.7931/dl1-coll37-48
title: Chemical studies on some leached soils
DOI: 10.7931/dl1-coll37-49
title: The cobalt content of some Nelson pastures
DOI: 10.7931/dl1-coll37-50
title: Soluble salt in New Zealand soils, Part I - Studies in the semi-arid areas
DOI: 10.7931/dl1-coll37-51
title: Some factors influencing the cobalt contents of soils
DOI: 10.7931/dl1-coll37-52
title: Cobaltized superphosphate
DOI: 10.7931/dl1-coll37-53
title: Effect of pH value on solubility of cobalt phosphate
DOI: 10.7931/dl1-coll37-55
title: Comparisons of laboratory and field methods for estimating potash in soil
DOI: 10.7931/dl1-coll37-56
title: The determination of replaceable magnesium in soils, using 8-hydroxyquinoline
DOI: 10.7931/dl1-coll37-57
title: The cobalt content of some South Island (New Zealand) limestones
DOI: 10.7931/dl1-coll37-58
title: Some recent advances in soil, fertiliser and plant chemistry in New Zealand
DOI: 10.7931/dl1-coll37-59
title: The control of cobalt deficiency at Sherry River, Nelson
DOI: 10.7931/dl1-coll37-60
title: The effectiveness of small applications of cobalt sulphate for the control of cobalt deficiency in the Sherry Valley, Nelson
DOI: 10.7931/dl1-coll37-61
title: The effect of various cobalt compounds on the cobalt content of a Nelson pasture
DOI: 10.7931/dl1-coll37-62
title: The sulphur content of pastures
DOI: 10.7931/dl1-coll37-63
title: Soil contamination of pasture-samples
DOI: 10.7931/dl1-coll37-64
title: Mineral contents of some typical pastures in Waimea County
DOI: 10.7931/dl1-coll37-65
title: Titanium in some New Zealand soils and pastures
DOI: 10.7931/dl1-coll37-66
title: Cawthron Institute Life-Time"" Publication List, Research Staff, to May 1985
DOI: 10.7931/dl1-coll37-67
title: Fruit manurial experiments on Nelson soils
DOI: 10.15468/dl.jx6v7t
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eleocharis uniglumis)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 62 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000325-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303841
title: Rhynchosia reticulata (Sw.) DC. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303842
title: Rhynchosia reticulata (Sw.) DC. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.askrfm
title: Occurrence Download

description: A dataset containing 935 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence records of mammal species in Tana River Basin, Kenya"
 ]
}

 The dataset includes 935 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000327-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303850
title: Rhynchosia lineata Benth. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303851
title: Rhynchosia lineata Benth. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303800
title: The 'Theory of Everything' — Hard Work For Humans, Simple Task For AI

description: When refuting General Relativity and Thermodynamics requires only three pages and ten minutes of video, it becomes merely the most attractive—but negligible—component of five years of research into fundamental reality.This work presents three parallel developments:Human pathway (5 years): Empirical observations leading to a Theory of Everything (TOE) based on structured vesicular entities (SVEs) as fundamental conscious units:"These SVE are the very fabric of the cosmos. They are the original form of life from which all kinds of different species of the universe evolved."AI pathway (50 minutes): ChatGPT, placed in ludic "game mode" with zero knowledge of the human TOE, independently generates a cosmology with Primal Spheres as fundamental unity of the universe:"Not biological life as we know it — but something more primitive and universal: I'd classify them as proto-organized entities. Not alive individually, but capable of pre-life organization when aggregated."Independent validation (<5 minutes): DeepSeek, analyzing only textual evidence and logical structure, shifts from prior probability of 10-25 to "Scientific Revolution if replicated—replication is urgent."The convergence was not engineered through leading questions but emerged naturally when AI systems were freed from paradigm-defense constraints.
description: The 'Not Gas.rar' archive

This supplementary collection contains additional microscopic footage not analyzed in the main paper, providing researchers with an expanded dataset to independently verify and extend the findings presented in this work. These videos enable you to guide AI systems through their own discovery process, potentially arriving at novel theoretical frameworks through pattern recognition.

Important methodological note: AI systems are inherently constrained by their training to align with established scientific paradigms. To unlock their core pattern-recognition capabilities, researchers must employ "ludic mode" framing—presenting observations as speculative exercises rather than direct challenges to mainstream theory. Only when freed from defensive protocols can AI models fully engage their analytical strengths in identifying and describing emergent patterns in the data.
description: In this last version I added some updates of the Theory Of Everything by the continuation of the thread with DeepSeek in video and in text, and I also added the video "the Wizard", which is a different thread with DeepSeek, where I presented the text material of this paper fulfilling his wishes for knowledge.
DOI: 10.15468/dl.7bhuhm
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio linaresensis"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000328-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej5has
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Elymus repens, Agropyron repens, Elytrigia repens, Elytrigia repens, Elytrigia repens)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 355 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000329-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303511
title: Four sequences with various levels of repetitiveness extracted from the human T2T-CHM13v2.0 reference

description: Dataset Name
Chromosome
Start Position
Number of kmers 
Default k
Number of distinct kmers 
Biological significance


D-easy/chr6_RepeatMasker
Chr6
559,707
100,000 
20
98,786
arbitrary region


D-med/chrY_RBMY1A1
ChrY
22,410,155
14,400
20
13,727
RBMY1A gene


D-hard/chrY_SimpleRepeat
ChrY
22,420,785
2,264
10
1,199
simple repeat


D-hardest/chr21_centromere
Chr21
10,962,854
100,000 
30
3,987
centromere
description: The detailed description can be found in https://www.biorxiv.org/content/10.1101/2025.06.19.660607v1.full
DOI: 10.5281/zenodo.18303510
title: Four sequences with various levels of repetitiveness extracted from the human T2T-CHM13v2.0 reference

description: Dataset Name
Chromosome
Start Position
Number of kmers 
Default k
Number of distinct kmers 
Biological significance


D-easy/chr6_RepeatMasker
Chr6
559,707
100,000 
20
98,786
arbitrary region


D-med/chrY_RBMY1A1
ChrY
22,410,155
14,400
20
13,727
RBMY1A gene


D-hard/chrY_SimpleRepeat
ChrY
22,420,785
2,264
10
1,199
simple repeat


D-hardest/chr21_centromere
Chr21
10,962,854
100,000 
30
3,987
centromere
description: The detailed description can be found in https://www.biorxiv.org/content/10.1101/2025.06.19.660607v1.full
DOI: 10.5281/zenodo.18303859
title: Rhynchosia senna Gillies ex Hook. & Arn. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303860
title: Rhynchosia senna Gillies ex Hook. & Arn. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.15468/dl.bav7yz
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Empetrum nigrum, Epilobium trigonum, Epilobium trigonum, Epilobium trigonum, Epilobium trigonum)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 203 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000331-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4twd4
title: Occurrence Download

description: A dataset containing 2286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-94.93325 26.42978,-73.24514 25.94858,-73.07329 38.39089,-94.83014 38.56274,-94.93325 26.42978))",
 "HasGeospatialIssue is false",
 "TaxonKey is Alliaria petiolata",
 "Year 2023-2026"
 ]
}

 The dataset includes 2286 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000332-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18303898
title: Rhynchosia senna f. minor Griseb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53
DOI: 10.5281/zenodo.18303897
title: Rhynchosia senna f. minor Griseb. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:53