cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/2vz16d/oujizc
title: Moak-Cheese.Sapami.AAinclu.cheese.recode.vcf

description: Genotypes of cheese strains with ancestral alleles used for SVD, D, H and iHS genomescan . Ancestral allele infered from S. paradoxus and S. mikate.
DOI: 10.15454/2vz16d/sh92th
title: GWEvSchSampAss-WCROE.ped

description: Genotypes file at hapmap format, used for hapFLK analysis (Wine, Cheese, Rum, and Mediterrannean oak populations)
DOI: 10.15454/2vz16d/xotfvx
title: Genowine_Evolya_Schuller_Sampaio_Assembly.phased.vcf

description: Phased genotypes including genotypes of newly sequenced strains (GATK genotyping) + genotypic data obtained from assemblies + additionnal genotypes of Mediterranean oak strains from Almeida et al. 2015
DOI: 10.15454/2vz16d/8umwcn
title: Ge_Ev_Sc_Sa.beagle.Vin_synth.vcf

description: Genotypes files used for SVD, and D used for wine strains. No ancestral allele
DOI: 10.15454/2vz16d/e2dib4
title: SA2-Ge_Ev_Sc_Sa.beagle.VinRhumMeoak.recode.AA1alsynthMedOak2.vcf

description: Genotypes of Mediterranean oak strains with ancestral alleles used for SVD, D, H and iHS genomescan. Ancestral allele infered from S. paradoxus and S. mikate.
DOI: 10.15454/2vz16d/emokxu
title: SA2-Ge_Ev_Sc_Sa.beagle.VinRhumMeoak.recode.AA1alsynthRhum.vcf

description: Genotypes of rum and bioethanol strains with ancestral alleles, used for SVD, D, H and iHS genomescan . Ancestral allele infered from S. paradoxus and S. mikate.
DOI: 10.15454/2vz16d/oa2ujj
title: SA2-Ge_Ev_Sc_Sa.beagle.VinRhumMeoak.recode.AA1alsynthVinfiltre.recode.vcf

description: Genotypes with ancestral alleles of wine strains, used for iHS and omega genomescan. Ancestral allele infered from S. paradoxus and S. mikate.
DOI: 10.57745/rk2jn7
title: ScriptCompileoutputSVDms.R

description: This R script selects the highest value obtained for each SVD run from ms output, and compile them in an output file. (launched by LaunchSVD-dtmswinesimple.sh)
DOI: 10.57745/upadev
title: LaunchSVD-dtmswinesimple.sh

description: Script launching ms software for the simulation of a neutral population growth under the demogrpahic model proposed by Almeida et al. 2015 Molecular ecology (doi: 10.1111/mec.13341)
DOI: 10.57745/dvteka
title: mstoSVD.pl

description: This script converst ms data into a format compatible with SVDTools requirement. This perl script is used by LaunchSVD-dtmswinesimple.sh . It also filter out the phases simulating the individuals of the Mediterranean oak population that we have to remove for the study of wine population only.
DOI: 10.57745/ewvbro
title: filtreDtmspoursvd.pl

description: This script removes lines without variant obtained after the convertion of the ms file to the SVD file. This filter is required ad empty lines occured as the wine population is simulated simultaneously with the Mediterranean oak population that we have to remove for the study of intrapopulation polymorphism.
DOI: 10.6084/m9.figshare.22773776
title: FUCCI RPE1 cells

description: FUCCI RPE2 cells originally published here. Data can be downloaded and preprocessed into provided H5AD file from GEO here with accession number GSE128365.
DOI: 10.6084/m9.figshare.22773761
title: FUCCI U2OS cells

description: FUCCI U2OS cells originally published here. Data can be downloaded and preprocessed into provided H5AD file from here.
DOI: 10.5519/qd.bljit1g1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (166 records)
DOI: 10.7298/nvev-n797
title: Surveillance Optimization Project for Chronic Wasting Disease dataset for Ohio, US, 2019-2021
DOI: 10.5519/qd.ovhlgzx8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (82 records)
DOI: 10.3886/e117401v1-138462
title: Data and Code for: RATIONAL HABIT FORMATION: EXPERIMENTAL EVIDENCE FROM HANDWASHING IN INDIA

description: <br> We test the predictions of the rational addiction model, reconceptualized as rational habit formation, in the context of handwashing in rural India. To track handwashing, we design soap dispensers with timed sensors. We test for rational habit formation by informing some households about a future change in the returns to daily handwashing. Monitoring and incentives raise handwashing contemporaneously, and effects persist well after they end. In addition, people are rational about this habit formation: when they anticipate future monitoring, they increase their current handwashing. Average child weight and height increase for all study arms given soap dispensers. <br>
description: Response Rates: Response rates vary by data type and over time (baseline data, biweekly data, midline data, and daily handwashing dispenser data): specified within text<br>
description: Initial sample provided by partner organization (households who had participated in earlier programs): this sample was then restricted to those households with children under 60 months at baseline. This sample was randomized into several treatment arms as specified in the paper.<br>
DOI: 10.6073/pasta/a7cff1291f1fd73b34da0a06107b9231
title: SBC LTER: Reef: Kelp Forest Community Dynamics: Cover of sessile organisms, Uniform Point Contact

description: These data describe the cover of sessile invertebrates, understory macroalgae, and bottom substrate types as determined by a uniform point contact method. The presence of over 150 taxa of sessile invertebrates and macroalgae are recorded at 80 uniformly spaced points along permanent 40m x 2m transects. Multiple species can be recorded at any given point. Percent cover of a given species on a transect can be estimated from UPC observations as the fraction of total points at which that species was present x 100. The total percent cover of all species combined using this method can exceed 100%; however, the percent cover of any single species cannot exceed 100%. These data are part of SBC LTERs kelp forest monitoring program, which began in 2000 and was designed to track long-term patterns in species abundance and diversity of reef-associated organisms in the Santa Barbara Channel, California, USA. The sampling locations in this dataset include nine reef sites along the mainland coast of the Santa Barbara Channel and at two sites on the north side of Santa Cruz Island. These sites reflect several oceanographic regimes in the channel and vary in distance from sources of terrestrial runoff. Data collection began in 2000 and this dataset is updated annually. The time period of data collection varied among the 11 kelp forest sites. Sampling at BULL, CARP, and NAPL began in 2000, sampling at the other 6 mainland sites (AHND, AQUE, IVEE, GOLB, ABUR, MOHK) began in 2001 (transects 3, 5, 6, 7, 8 at IVEE were added in 2011). Data collection at the two Santa Cruz Island sites (SCTW and SCDI) began in 2004. See Methods for more information. The two tables in this data package include: 1) The percent cover of sessile invertebrate and understory macroalage; and 2) the percent cover of bottom substrate.
DOI: 10.6084/m9.figshare.22787129
title: 2h of fungal keratitis

description: 2h group of fungal keratitis
DOI: 10.6084/m9.figshare.22787129.v2
title: 2h of fungal keratitis

description: 2h group of fungal keratitis
DOI: 10.26033/n5hm-ay60
title: Hayabusa AMICA Bundle V1.0

description: The Asteroid Multi-band Imaging Camera (AMICA) of the Hayabusa mission to the asteroid 25143 Itokawa obtained 1662 images from May 11, 2003, shortly after launch, until November 19, 2005, after the Itokawa encounter. This data set includes all images from the mission, plus pre-flight flat field images.
DOI: 10.5281/zenodo.7916728
title: Experimental data of "Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces" (NatComm)

description: The experimental data in this dataset is the basis of the article entitled "Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces", which will hopefully be published in NatComm soon. We will add a DOI then. It contains the vibrational sum-frequency generation (VSFG), atomic-force microscopy (AFM) and surface-pressure datasets of alpha-synuclein interacting with 1,2-Dipalmitoyl-sn-glycero-3-phosphoglycerol (DPPG) monolayers, at various alpha-synuclein concentrations.
DOI: 10.5281/zenodo.7916727
title: Experimental data of "Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces" (NatComm)

description: The experimental data in this dataset is the basis of the article entitled "Elevated concentrations cause upright alpha-synuclein conformation at lipid interfaces", which will hopefully be published in NatComm soon. We will add a DOI then. It contains the vibrational sum-frequency generation (VSFG), atomic-force microscopy (AFM) and surface-pressure datasets of alpha-synuclein interacting with 1,2-Dipalmitoyl-sn-glycero-3-phosphoglycerol (DPPG) monolayers, at various alpha-synuclein concentrations.
DOI: 10.5281/zenodo.7872967
title: Gut Metagenome Assemblies for Veseli et al. 2023

description: A collection of anvi'o contigs databases for 408 human fecal metagenome assemblies from the study by Veseli et al. titled "High metabolic independence is a determinant of microbial resilience in the face of gut stress". These are publicly-available gut metagenomes originally obtained from several studies of the gut microbiome. See `METAGENOMES_INFO.txt` file for references and sample SRA accessions. The metagenomes were assembled individually using IDBA-UD as part of the anvi'o metagenomics workflow in anvi'o v7.1-dev. As part of this workflow, they were annotated with KEGG KOfams using `anvi-run-kegg-kofams` and a KEGG snapshot from December 12, 2020 (modules database hash value `45b7cc2e4fdc`). See manuscript and its reproducible workflow for details.
DOI: 10.5281/zenodo.7872966
title: Gut Metagenome Assemblies for Veseli et al. 2023

description: A collection of anvi'o contigs databases for 408 human fecal metagenome assemblies from the study by Veseli et al. titled "High metabolic independence is a determinant of microbial resilience in the face of gut stress". These are publicly-available gut metagenomes originally obtained from several studies of the gut microbiome. See `METAGENOMES_INFO.txt` file for references and sample SRA accessions. The metagenomes were assembled individually using IDBA-UD as part of the anvi'o metagenomics workflow in anvi'o v7.1-dev. As part of this workflow, they were annotated with KEGG KOfams using `anvi-run-kegg-kofams` and a KEGG snapshot from December 12, 2020 (modules database hash value `45b7cc2e4fdc`). See manuscript and its reproducible workflow for details.
DOI: 10.6084/m9.figshare.22787375
title: 24h group of fungal keratitis

description: 24h group of fungal keratitis
DOI: 10.6084/m9.figshare.22787375.v2
title: 24h group of fungal keratitis

description: 24h group of fungal keratitis
DOI: 10.6084/m9.figshare.22787375.v1
title: 24h group of fungal keratitis

description: 24h group of fungal keratitis
DOI: 10.5517/ccdc.csd.cc2dz3l3
title: CCDC 2233475: Experimental Crystal Structure Determination

description: Related Article: Subrata Mandal, Rahul Naskar, Apurba Sau Mondal, Biswajit Bera, Tapan K. Mondal|2023|Dalton Trans.|52|5983|doi:10.1039/D2DT04170G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dz3m4
title: CCDC 2233476: Experimental Crystal Structure Determination

description: Related Article: Subrata Mandal, Rahul Naskar, Apurba Sau Mondal, Biswajit Bera, Tapan K. Mondal|2023|Dalton Trans.|52|5983|doi:10.1039/D2DT04170G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dz3n5
title: CCDC 2233477: Experimental Crystal Structure Determination

description: Related Article: Subrata Mandal, Rahul Naskar, Apurba Sau Mondal, Biswajit Bera, Tapan K. Mondal|2023|Dalton Trans.|52|5983|doi:10.1039/D2DT04170G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7916708
title: Exposure to a Vitamin D Best Practices Toolkit, Model, & E-Tools Increases Knowledge, Confidence, and Translation of Research to Public Health and Practice

description: Preventable vitamin D deficiency (VDD) is a global health concern. Prevention, early detection, and treatment of vitamin D deficiency aligning with serum 25-hydroxyvitamin D recommendations of 40-60 ng/ml (100-150 nmol/L) by an international panel of 48 vitamin D researchers would result in significant health benefits and cost-savings to individuals and society. However, research shows healthcare professionals lack knowledge and confidence in vitamin D best practices. A vitamin D toolkit was developed, including a model for decision-making support, e-tools, and accompanying resources, and implemented using an online, asynchronous learning management system. The pre-, post-test, and follow-up survey study design aimed to increase nurses’ and dietitians' levels of vitamin D knowledge, confidence, translation of evidence into spheres of practice and influence, and identify translation barriers. Toolkit completion increased participants’ (n=119) knowledge, 31% to 65% (p &lt;0.001) and confidence 2.0 to 3.3 (p&lt;0.001) on a scale of 1-5. Respondents reported using the model (100%) as a framework successfully guiding the translation of vitamin D knowledge into their sphere of influence or practice (94%) and identified translation barriers. The toolkit should be included in interdisciplinary continuing education, research/quality improvement initiatives, healthcare policy, and institutions of higher learning to increase movement of research to practice.
DOI: 10.5281/zenodo.7916707
title: Exposure to a Vitamin D Best Practices Toolkit, Model, & E-Tools Increases Knowledge, Confidence, and Translation of Research to Public Health and Practice

description: Preventable vitamin D deficiency (VDD) is a global health concern. Prevention, early detection, and treatment of vitamin D deficiency aligning with serum 25-hydroxyvitamin D recommendations of 40-60 ng/ml (100-150 nmol/L) by an international panel of 48 vitamin D researchers would result in significant health benefits and cost-savings to individuals and society. However, research shows healthcare professionals lack knowledge and confidence in vitamin D best practices. A vitamin D toolkit was developed, including a model for decision-making support, e-tools, and accompanying resources, and implemented using an online, asynchronous learning management system. The pre-, post-test, and follow-up survey study design aimed to increase nurses’ and dietitians' levels of vitamin D knowledge, confidence, translation of evidence into spheres of practice and influence, and identify translation barriers. Toolkit completion increased participants’ (n=119) knowledge, 31% to 65% (p &lt;0.001) and confidence 2.0 to 3.3 (p&lt;0.001) on a scale of 1-5. Respondents reported using the model (100%) as a framework successfully guiding the translation of vitamin D knowledge into their sphere of influence or practice (94%) and identified translation barriers. The toolkit should be included in interdisciplinary continuing education, research/quality improvement initiatives, healthcare policy, and institutions of higher learning to increase movement of research to practice.
DOI: 10.18739/a23b5w926
title: GNSS positions of time-lapse cameras in Johns Hopkins Inlet, Glacier Bay National Park, Alaska, 2021

description: Tidewater glacier fjords are highly dynamic environments that are affected by several glaciological and oceanographic processes: (i) subglacial discharge creates upwelling plumes that drive estuarine circulation and promote submarine melting of glaciers and icebergs, (ii) iceberg calving, which is affected by submarine melting, is a stochastic energy source that mixes near-glacier waters and produces waves that crash on shore and cause icebergs to capsize, and (iii) motion of icebergs and fjord waters are affected by winds, tides, and subglacial discharge. Numerous species reside in tidewater glacier fjords, including harbor seals, which seasonally aggregate in fjords and use ice habitat for critical life functions including pupping, molting, and foraging. Seals that haul-out on icebergs during the pupping and molting seasons take longer and deeper dives for feeding than those that use terrestrial haul-outs, but may acquire higher quality food. Additionally, icebergs do not flood during high tide, which increases the amount of time that seals can remain hauled-out and that pups can spend nursing, thus increasing energetic intake. Many basic questions remain unanswered, and the energy costs of coping with a constantly evolving landscape are unknown. This project addresses these deficiencies by investigating the temporal and spatial variability of seal habitat in Johns Hopkins Inlet, Glacier Bay, by synthesizing aerial surveys with high-rate time-lapse photogrammetry. This dataset consists of GNSS survey data (rinex files) for high-rate (1 photo per minute) time-lapse cameras in Johns Hopkins Inlet that were deployed in summer 2021. The photos are available at https://arcticdata.io/data/10.18739/A2W08WH8M.
DOI: 10.5281/zenodo.7912768
title: MUSES Fractional Vegetation Coverage (FVC) 8-Day Global 1km SIN Grid in 2012

description: The MUltiscale Satellite remotE Sensing (MUSES) product suite includes products with different spatial and temporal resolutions for parameters such as Normalized Difference Vegetation Index (NDVI), Near-Infrared Reflectance of Vegetation (NIRv), Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Fractional Vegetation Coverage (FVC), Gross Primary Production (GPP), Net Primary Production (NPP). For more information about the MUSES products, please refer to this website (https://muses.bnu.edu.cn/). This dataset is the MUSES global FVC product at 1 km spatial resolution and 8-day temporal resolution. The MUSES FVC product is provided on a Sinusoidal grid and spans from 2000 to 2019 (continuously updated). It was generated from the MUSES LAI product at 1 km resolution and other ancillary information using the complement to unity of the transmittance of light through the entire canopy in the nadir viewing direction (Xiao <em>et al</em>., 2016). The MUSES FVC values are physically consistent with the corresponding MUSES LAI values. The MUSES FVC product is spatially complete and temporally continuous. This dataset is the MUSES FVC product in 2012. <em>Please <strong>click here</strong> to download the MUSES FVC product <strong>in 2011</strong></em>, <em>and <strong>click here</strong> to download the MUSES FVC product <strong>in 2013</strong></em>. <strong>Dataset Characteristics:</strong> Spatial Coverage: Global Temporal Coverage: 2012 Spatial Resolution: 1 km Temporal Resolution: 8 days Projection: Sinusoidal Data Format: HDF Scale: 0.004 Valid Range: 0 – 250 <strong>Citation </strong>(Please cite this paper whenever these data are used)<strong>:</strong> Xiao Zhiqiang, <em>et a</em>l. (2016). Estimating the Fractional Vegetation Cover from GLASS Leaf Area Index Product. <em>Remote Sensing</em>, 8, 337. If you have any questions, please contact Prof. Zhiqiang Xiao (zhqxiao@bnu.edu.cn).
DOI: 10.5281/zenodo.7912767
title: MUSES Fractional Vegetation Coverage (FVC) 8-Day Global 1km SIN Grid in 2012

description: The MUltiscale Satellite remotE Sensing (MUSES) product suite includes products with different spatial and temporal resolutions for parameters such as Normalized Difference Vegetation Index (NDVI), Near-Infrared Reflectance of Vegetation (NIRv), Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Fractional Vegetation Coverage (FVC), Gross Primary Production (GPP), Net Primary Production (NPP). For more information about the MUSES products, please refer to this website (https://muses.bnu.edu.cn/). This dataset is the MUSES global FVC product at 1 km spatial resolution and 8-day temporal resolution. The MUSES FVC product is provided on a Sinusoidal grid and spans from 2000 to 2019 (continuously updated). It was generated from the MUSES LAI product at 1 km resolution and other ancillary information using the complement to unity of the transmittance of light through the entire canopy in the nadir viewing direction (Xiao <em>et al</em>., 2016). The MUSES FVC values are physically consistent with the corresponding MUSES LAI values. The MUSES FVC product is spatially complete and temporally continuous. This dataset is the MUSES FVC product in 2012. <em>Please <strong>click here</strong> to download the MUSES FVC product <strong>in 2011</strong></em>, <em>and <strong>click here</strong> to download the MUSES FVC product <strong>in 2013</strong></em>. <strong>Dataset Characteristics:</strong> Spatial Coverage: Global Temporal Coverage: 2012 Spatial Resolution: 1 km Temporal Resolution: 8 days Projection: Sinusoidal Data Format: HDF Scale: 0.004 Valid Range: 0 – 250 <strong>Citation </strong>(Please cite this paper whenever these data are used)<strong>:</strong> Xiao Zhiqiang, <em>et a</em>l. (2016). Estimating the Fractional Vegetation Cover from GLASS Leaf Area Index Product. <em>Remote Sensing</em>, 8, 337. If you have any questions, please contact Prof. Zhiqiang Xiao (zhqxiao@bnu.edu.cn).
DOI: 10.3886/e191202
title: Data and Code for: Place-Based Consequences of Person-Based Transfers: Evidence from Recessions

description: This project contains data and code for "Place-Based Consequences of Person-Based Transfers: Evidence from Recessions."
DOI: 10.3886/e191202v1
title: Data and Code for: Place-Based Consequences of Person-Based Transfers: Evidence from Recessions

description: This project contains data and code for "Place-Based Consequences of Person-Based Transfers: Evidence from Recessions."
DOI: 10.6084/m9.figshare.22790786
title: Hamilton_conjugative_contigs.fasta

description: FASTA file of 1598 conjugative systems identified from human gut metagenomic data. This file is the output from bioinformatics searches in Hamilton et al. (2023) and described on https://github.com/bjoris33/ce_synthesis_paper.
DOI: 10.5517/ccdc.csd.cc2dzjsq
title: CCDC 2233884: Experimental Crystal Structure Determination

description: Related Article: Qian Rao, Yin Zhang, Yin-Ping Liu, Bo Jiang, Xiang Wang, Shu-Jiang Tu, Wen-Juan Hao|2023|Chem.Commun.|59|5725|doi:10.1039/D3CC00531C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.