cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7533832
title: oemof-B3 Raw Data

description: Raw data for the sector-integrated energy system model of Brandenburg and Berlin oemof-B3. This dataset has been compiled by the Reiner Lemoine Institute within the project "UMAS: Untertägige Methanisierung im Aquiferspeicher". Related publications and links: Documentation on methods and input data: "Biologische Methanisierung im Untergrundspeicher im Energiesystem mit hohem Anteil Erneuerbarer Energien" (German), link will follow Final report of UMAS: "Verbundthema: Untertägige Methanisierung im Aquiferspeicher" (German), link will follow Further information and contact: https://reiner-lemoine-institut.de/umas/ Documentation of the model on ReadTheDocs and github <strong>Licenses</strong> Different licenses apply to the components of the dataset. For details see the table in Metadata.csv.
DOI: 10.5281/zenodo.8363235
title: oemof-B3 Raw Data

description: <strong>Raw data for oemof-B3 v0.0.3</strong> In the new data set, changes occur in four files: capacities.csv green field assumptions are added for excess and shortage. costs_efficiencies.csv var_value formatting is fixed. Before: "{""variable_costs"": 1E-7}". After: {"variable_costs": 1E-7}. el_gas_constraint.csv The type specification for large and small boiler has been fixed var_value convention has been adapted with newer oemof.solph version. Before: "{""gas-heat_central-B"": 1}". After: {"custom_attributes": {"gas-heat_central-B": 1}}. emission_constraint.csv var_value convention has been adapted with newer oemof.solph version. Before:"{""emission_factor"": 119.71}". After: {"custom_attributes": {"emission_factor": 119.71}}. <strong>Raw data for oemof-B3 v0.0.2</strong> Raw data for the sector-integrated energy system model of Brandenburg and Berlin oemof-B3. This dataset has been compiled by the Reiner Lemoine Institute within the project "UMAS: Untertägige Methanisierung im Aquiferspeicher". Related publications and links: Documentation on methods and input data: "Biologische Methanisierung im Untergrundspeicher im Energiesystem mit hohem Anteil Erneuerbarer Energien" (German), link will follow Final report of UMAS: "Verbundthema: Untertägige Methanisierung im Aquiferspeicher" (German), link will follow Further information and contact: https://reiner-lemoine-institut.de/umas/ Documentation of the model on ReadTheDocs and github <strong>Licenses</strong> Different licenses apply to the components of the dataset. For details see the table in Metadata.csv.
DOI: 10.5281/zenodo.8364204
title: oemof-B3 Raw Data

description: <strong>Raw data for oemof-B3 v0.0.3</strong> In the new data set, changes occur in four files: capacities.csv green field assumptions are added for excess and shortage. costs_efficiencies.csv var_value formatting is fixed. Before: "{""variable_costs"": 1E-7}". After: {"variable_costs": 1E-7}. el_gas_constraint.csv The type specification for large and small boiler has been fixed var_value convention has been adapted with newer oemof.solph version. Before: "{""gas-heat_central-B"": 1}". After: {"custom_attributes": {"gas-heat_central-B": 1}}. emission_constraint.csv var_value convention has been adapted with newer oemof.solph version. Before:"{""emission_factor"": 119.71}". After: {"custom_attributes": {"emission_factor": 119.71}}. <strong>Raw data for oemof-B3 v0.0.2</strong> Raw data for the sector-integrated energy system model of Brandenburg and Berlin oemof-B3. This dataset has been compiled by the Reiner Lemoine Institute within the project "UMAS: Untertägige Methanisierung im Aquiferspeicher". Related publications and links: Documentation on methods and input data: "Biologische Methanisierung im Untergrundspeicher im Energiesystem mit hohem Anteil Erneuerbarer Energien" (German), link will follow Final report of UMAS: "Verbundthema: Untertägige Methanisierung im Aquiferspeicher" (German), link will follow Further information and contact: https://reiner-lemoine-institut.de/umas/ Documentation of the model on ReadTheDocs and github <strong>Licenses</strong> Different licenses apply to the components of the dataset. For details see the table in Metadata.csv.
DOI: 10.5281/zenodo.8364221
title: anabacerthia_variegaticeps_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8364220
title: anabacerthia_variegaticeps_spades_01.fasta.gz

description: .
DOI: 10.5519/qd.rpdla564
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (822939 records)
DOI: 10.25378/janelia.24088431
title: Single cell reconstruction data from MouseLight database and related Matlab analysis scripts

description: This document describes how to identify and extract ALM neurons from the MouseLight database of individual reconstructed neurons (https://ml-neuronbrowser.janelia.org/) to define ALM projection zones (relevant to Chen, Liu et al., Cell, 2023). All scripts are in Matlab R2022b./MouseLight_figshare/MouseLightComplete contains all reconstructed single neurons from the MouseLight data set, in .json and .swc formats.Use ‘ExtractMouseLightNeuronsFromJsonFiles.m’ to extract MouseLight neuron ID, soma coordinates and annotation, and axon coordinates from the above directory.Use ‘ExtractMouseLightALMneurons.m’ to identify and extract ALM neurons from the MouseLight data set. ALM neurons are defined based on functional maps of ALM (photoinhibition) in the CCF coordinate system, contained in ‘ALM_functionalData.nii’ (from Li, Daie, et al Nature, 2016).Use ‘ALMprojDensity.m’ to compute and generate an ALM projection map based on axonal density. The map is saved in ‘ALM_mask_150um3Dgauss_Bilateral.mat’ as smoothed (3D Gaussian, sigma = 150 um) axonal density in a 3D matrix: F_smooth.First axis: dorsal-ventral, second axis: medial-lateral, third axis: anterior-posterior.Use ‘medial_lateral_ALMprojDensities.m’ to compute and generate medial and lateral ALM projection maps separately.Medial ALM soma location &lt; 1.5 mm from the midline; lateral ALM soma locations &gt; 1.5 mm from the midline.The maps are saved in ‘medialALM_mask_150um3Dgauss_Bilateral.mat’ and ‘lateralALM_mask_150um3Dgauss_Bilateral.mat’ as smoothed (3D Gaussian, sigma = 150 um) axonal density in 3D matrices, respectively.Use ‘PlotALMinCCF.m’ to plot voxels of ALM in CCF, defined by the functional maps in ‘ALM_functionalData.nii’.Use ‘PlotMouseLightALMneurons.m’ to plot ALM neurons (all, medial, or lateral) in CCF; figures are saved in .tiff format.Other functions:‘loadTifFast.m’ is called to load CCF .tif file (Annotation_new_10_ds222_16bit.tif).‘plotCCFbrain.m’ is called to plot an isosurface of the CCF brain (Annotation_new_10_ds222_16bit.tif).<br>
DOI: 10.5519/qd.i7rkaw04
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (743 records)
DOI: 10.3886/e101113v1-141690
title: Berry Slave Value Database

description: This study uses historical records from 36 archives in the United States to analyze 8,437 enslaved people’s sale and/or appraisal prices from 1797 to 1865. Demographic information, including name, year, age/age group, gender, state, and trade/skill notations were recorded when applicable. By calculating average appraisal and sale values across cross-sections of gender (male or female) and age group (0-10 years old, 11-22 years old, 23-39 years old, and 40+ years old), a total of sixteen major comparative prices were analyzed (app/male/0-10; app/female/0-10; sale/male/0-10; sale/female/0-10; app/male/11-22; app/female/11-22; sale/male/11-22; sale/female/11-22; app/male/23-39; app/female/23-39; sale/male/23-39; sale/female/23-39; app/male/40+; app/female/40+; sale/male/40+; sale/female/40+). Scholars have the opportunity to use this data set to understand how enslaved people were valued and appraised. The demographic data included will be useful to those who want to explore various aspects of the history of slavery and enslaved people.
description: The universe of this study includes enslaved individuals in the United States (specifically in Alabama, Georgia, Louisiana, Maryland, Mississippi, North Carolina, South Carolina, Tennessee, Texas, and Virginia) during the late eighteenth and early to mid-nineteenth century. <br>. Smallest Geographic Unit: Plantation
description: All the data comes from manuscript archival collections at various historical repositories.<br>
DOI: 10.5281/zenodo.8364244
title: arremon_brunneinucha_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.8364243
title: arremon_brunneinucha_spades_01.fasta.gz

description: .
DOI: 10.5517/ccdc.csd.cc2dbmds
title: CCDC 2214745: Experimental Crystal Structure Determination

description: Related Article: Longbin Ren, Yi Han, Xudong Hou, Yong Ni, Ya Zou, Tianyu Jiao, Jishan Wu|2023|J.Am.Chem.Soc.|145|12398|doi:10.1021/jacs.3c03616
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbmhw
title: CCDC 2214748: Experimental Crystal Structure Determination

description: Related Article: Longbin Ren, Yi Han, Xudong Hou, Yong Ni, Ya Zou, Tianyu Jiao, Jishan Wu|2023|J.Am.Chem.Soc.|145|12398|doi:10.1021/jacs.3c03616
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbmky
title: CCDC 2214750: Experimental Crystal Structure Determination

description: Related Article: Longbin Ren, Yi Han, Xudong Hou, Yong Ni, Ya Zou, Tianyu Jiao, Jishan Wu|2023|J.Am.Chem.Soc.|145|12398|doi:10.1021/jacs.3c03616
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dbmjx
title: CCDC 2214749: Experimental Crystal Structure Determination

description: Related Article: Longbin Ren, Yi Han, Xudong Hou, Yong Ni, Ya Zou, Tianyu Jiao, Jishan Wu|2023|J.Am.Chem.Soc.|145|12398|doi:10.1021/jacs.3c03616
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/4154521
title: 🏚️"Did you feel that?" Tweets on 🇵🇭 earthquakes
DOI: 10.5281/zenodo.8364308
title: esophagus_mucosa

description: small RNASeq dataset from GTEX esophagus mucosa data.
DOI: 10.5281/zenodo.8364307
title: esophagus_mucosa

description: small RNASeq dataset from GTEX esophagus mucosa data.
DOI: 10.6084/m9.figshare.24164727
title: List of constitutive and developmentally-regulated replication domains; human

description: published in <br>Integrative detection and analysis of structural variation in cancer genomes.Dixon JR, Xu J, <b>Dileep V</b>, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, <b>Gilbert DM</b>, Yue F.Nat Genet. 2018 Oct;50(10):1388-1398. doi: 10.1038/s41588-018-0195-8. Epub 2018 Sep 10.PMID: 30202056
DOI: 10.5281/zenodo.8364312
title: esophagus_muscularis

description: small RNASeq dataset from GTEX esophagus muscularis data.
DOI: 10.5281/zenodo.8364311
title: esophagus_muscularis

description: small RNASeq dataset from GTEX esophagus muscularis data.
DOI: 10.5281/zenodo.8364316
title: heart_atrial_appendage

description: small RNASeq dataset from GTEX heart atrial appendage data.
DOI: 10.5281/zenodo.8364315
title: heart_atrial_appendage

description: small RNASeq dataset from GTEX heart atrial appendage data.
DOI: 10.5281/zenodo.8364320
title: heart_left_ventricle

description: small RNASeq dataset from GTEX heart left ventricle data.
DOI: 10.5281/zenodo.8364319
title: heart_left_ventricle

description: small RNASeq dataset from GTEX heart left ventricle data.
DOI: 10.6085/aa/marine_cbs.5.6
title: MARINe/PISCO: Intertidal: MARINe Coastal Biodiversity Surveys: Point Contact Surveys Summarized

description: Long-Term Monitoring and Biodiversity Surveys done by the Multi-Agency Rocky Intertidal Network (MARINe) occur throughout the year at sites ranging from Southeast Alaska to Mexico. Long Term Monitoring surveys assess within-site community change over time, while Biodiversity surveys were designed to capture among-site patterns of community structure (abundance and spatial distribution of species). In combination, the long-term, targeted species approach and the biodiversity surveys provide a wealth of information about the structure and dynamics of rocky intertidal communities along the Pacific Coast of North America. This metadata record documents the Point Contact surveys for the MARINe Biodiversity Surveys. Biodiversity surveys are comprised of four components, all sampled along the same transects: (1) point contact estimates of intertidal cover and substrate characteristics, (2) swath transects to estimate the density of seastars and abalone, (3) quadrat sampling to estimate the density of mobile invertebrates, and (4) topography (elevation relative to mean low low water (mllw)). Selected sites are resampled on a 3-5 year cycle. A site is defined as a contiguous rocky bench of at least 30m. Point Contact sampling consists of recording the diversity and abundance of invertebrates and algae along 11 transects of variable length extending from the upper intertidal to the low intertidal. Please note that species of concern have been removed from all public datasets, as well as data from sites funded by the National Park Service (NPS) and the United States Navy. For a comprehensive dataset, please contact the data set owner(s). For more information about the data described in this metadata record, please visit pacificrockyintertidal.org. The long-term California MPA boundary and project info tables referenced in this dataset can be found as a separate dataset here: https://opc.dataone.org/view/doi:10.25494/P6V884
DOI: 10.5517/ccdc.csd.cc26j8rs
title: CCDC 2041435: Experimental Crystal Structure Determination

description: Related Article: Palanisamy Rajakannu, Woochan Lee, Sanghoon Park, Hyung Suk Kim, Hanif Mubarok, Min Hyung Lee, Seunghyup Yoo|2023|Adv.Funct.Mater.|33|2211853|doi:10.1002/adfm.202211853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26s2fj
title: CCDC 2048927: Experimental Crystal Structure Determination

description: Related Article: Palanisamy Rajakannu, Woochan Lee, Sanghoon Park, Hyung Suk Kim, Hanif Mubarok, Min Hyung Lee, Seunghyup Yoo|2023|Adv.Funct.Mater.|33|2211853|doi:10.1002/adfm.202211853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26knl1
title: CCDC 2042763: Experimental Crystal Structure Determination

description: Related Article: Palanisamy Rajakannu, Woochan Lee, Sanghoon Park, Hyung Suk Kim, Hanif Mubarok, Min Hyung Lee, Seunghyup Yoo|2023|Adv.Funct.Mater.|33|2211853|doi:10.1002/adfm.202211853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8364328
title: kidney_cortex

description: small RNASeq dataset from GTEX kidney cortex data.
DOI: 10.5281/zenodo.8364327
title: kidney_cortex

description: small RNASeq dataset from GTEX kidney cortex data.
DOI: 10.57830/2300632
title: Data from: Wolves on the Katmai coast hunt sea otters and harbor seals

description: This data accompanies the manuscript titled "Wolves on the Katmai coast hunt sea otters and harbor seals" published in Scientific Naturalist in the journal Ecology. The dataset includes csv files of photo data and metadata and photo folders organized by year. Photo data is from a camera and tripod set up to take photos every two minutes to capture wolf and bear activity at an intertidal sea otter haul-out location.
DOI: 10.18112/openneuro.ds004594.v1.0.1
title: Brain surface fingerprints
DOI: 10.5281/zenodo.8364336
title: lung

description: small RNASeq dataset from GTEX lung data.
DOI: 10.5281/zenodo.8364335
title: lung

description: small RNASeq dataset from GTEX lung data.
DOI: 10.5281/zenodo.8364338
title: small_intestine_terminal_ileum

description: small RNASeq dataset from GTEX small_intestine terminal ileum data.
DOI: 10.5281/zenodo.8364337
title: small_intestine_terminal_ileum

description: small RNASeq dataset from GTEX small_intestine terminal ileum data.
DOI: 10.5281/zenodo.8364334
title: kidney_medulla

description: small RNASeq dataset from GTEX kidney medulla data.
DOI: 10.5281/zenodo.8364333
title: kidney_medulla

description: small RNASeq dataset from GTEX kidney medulla data.
DOI: 10.5281/zenodo.8364294
title: esophagus_gastroesophageal_junction

description: small RNASeq dataset from GTEX esophagus gastroesophageal junction data.
DOI: 10.5281/zenodo.8364293
title: esophagus_gastroesophageal_junction

description: small RNASeq dataset from GTEX esophagus gastroesophageal junction data.
DOI: 10.5281/zenodo.8364224
title: adipose_visceral_omentum

description: small RNASeq dataset from GTEX adipose visceral omentum data.
DOI: 10.5281/zenodo.8364225
title: adipose_visceral_omentum

description: small RNASeq dataset from GTEX adipose visceral omentum data.
DOI: 10.25345/c54f1mv46
title: MassIVE MSV000092908 - 20230920_Lipodomic_Blesso_LC_POS
title: We run Lipidomic samples from Blesso Lab, UCONN via LC/MS. Agilent QTOF.
DOI: 10.6084/m9.figshare.24168963
title: List of constitutive and developmentally-regulated replication domains; mouse (mm10)

description: Topologically associating domains are stable units of replication-timing regulation.<b>Pope BD</b>, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, Stamatoyannopoulos JA, Taylor J, Hardison RC, Kahveci T, Ren B, <b>Gilbert DM.</b>Nature. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986.PMID: 25409831
DOI: 10.25345/c50p0x20g
title: MassIVE MSV000092909 - 20230920_Lipodomic_Blesso_LC_NEG
title: We run the lipidomic samples via LC/MS with neg modes.
DOI: 10.5517/ccdc.csd.cc2d2vr3
title: CCDC 2207285: Experimental Crystal Structure Determination

description: Related Article: Yun-Jing Zhong, Yu-Ying Zhu, Jin-Lin Mo, Sheng-Lan Ye, Wen-Dan Luo, Xin Huang, Wen-Bin Chen, Wen Dong|2022|CrystEngComm|24|8488|doi:10.1039/D2CE01303G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d2vs4
title: CCDC 2207286: Experimental Crystal Structure Determination

description: Related Article: Yun-Jing Zhong, Yu-Ying Zhu, Jin-Lin Mo, Sheng-Lan Ye, Wen-Dan Luo, Xin Huang, Wen-Bin Chen, Wen Dong|2022|CrystEngComm|24|8488|doi:10.1039/D2CE01303G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d2vt5
title: CCDC 2207287: Experimental Crystal Structure Determination

description: Related Article: Yun-Jing Zhong, Yu-Ying Zhu, Jin-Lin Mo, Sheng-Lan Ye, Wen-Dan Luo, Xin Huang, Wen-Bin Chen, Wen Dong|2022|CrystEngComm|24|8488|doi:10.1039/D2CE01303G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5wp5
title: CCDC 2210197: Experimental Crystal Structure Determination

description: Related Article: Fabian Faassen, Natalya V. Izarova, Jan van Leusen, Paul Kögerler|2022|Cryst.Growth Des.|23|434|doi:10.1021/acs.cgd.2c01100
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5wr7
title: CCDC 2210199: Experimental Crystal Structure Determination

description: Related Article: Fabian Faassen, Natalya V. Izarova, Jan van Leusen, Paul Kögerler|2022|Cryst.Growth Des.|23|434|doi:10.1021/acs.cgd.2c01100
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5wwc
title: CCDC 2210203: Experimental Crystal Structure Determination

description: Related Article: Fabian Faassen, Natalya V. Izarova, Jan van Leusen, Paul Kögerler|2022|Cryst.Growth Des.|23|434|doi:10.1021/acs.cgd.2c01100
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.