cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26605513.v1
title: Additional file 4 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 4: Table. S4 The common and unique GO items between modules.
DOI: 10.6084/m9.figshare.26605564
title: Additional file 1 of Xoo-responsive transcriptome reveals the role of the circular RNA133 in disease resistance by regulating expression of OsARAB in rice

description: Additional file 1: Table S1. Summary statistic for sequence quality control and mapped data of samples. Table S2. Summary of whole RNA seq data. Tables S3–S6. List of all mRNAs (S3), lncRNAs (S4), miRNAs (S5), and circRNAs (S6) from the ZH11 seedling before and after 48 hours Xoo infection. Tables S7–S10. List of all DE mRNAs (S7), lncRNAs (S8), miRNAs (S9), and circRNAs (S10) after 48 hours Xoo infection. Table S11. Combined analysis of DE lncRNAs with DE miRNAs and DE mRNAs. Table S12. DE genes confirmed by RT-qPCR assays. Table S13. DE miRNAs confirmed by RT-qPCR assays. Table S14. List of all primers.
DOI: 10.6084/m9.figshare.26673291
title: Additional file 9 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants

description: Additional file 9. A .zip file including following LUSTR scripts, which can also be downloaded from https://github.com/JLuGithub/LUSTR : LUSTR_Finder.pl, LUSTR_RefCreator.pl, LUSTR_Extractor.pl, LUSTR_Realigner.pl, LUSTR_Caller.pl, README.txt, README.md, README_detail.txt, QuickGuide.txt, LICENSE.txt, testdata/test_genome_hg19_chr9_27571483_27575544.fa, testdata/test_pairendreads_C9orf72_ref70exp30.fastq, testdata/test_STRinfo.txt.
DOI: 10.6084/m9.figshare.26673291.v1
title: Additional file 9 of LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants

description: Additional file 9. A .zip file including following LUSTR scripts, which can also be downloaded from https://github.com/JLuGithub/LUSTR : LUSTR_Finder.pl, LUSTR_RefCreator.pl, LUSTR_Extractor.pl, LUSTR_Realigner.pl, LUSTR_Caller.pl, README.txt, README.md, README_detail.txt, QuickGuide.txt, LICENSE.txt, testdata/test_genome_hg19_chr9_27571483_27575544.fa, testdata/test_pairendreads_C9orf72_ref70exp30.fastq, testdata/test_STRinfo.txt.
DOI: 10.6084/m9.figshare.26605564.v1
title: Additional file 1 of Xoo-responsive transcriptome reveals the role of the circular RNA133 in disease resistance by regulating expression of OsARAB in rice

description: Additional file 1: Table S1. Summary statistic for sequence quality control and mapped data of samples. Table S2. Summary of whole RNA seq data. Tables S3–S6. List of all mRNAs (S3), lncRNAs (S4), miRNAs (S5), and circRNAs (S6) from the ZH11 seedling before and after 48 hours Xoo infection. Tables S7–S10. List of all DE mRNAs (S7), lncRNAs (S8), miRNAs (S9), and circRNAs (S10) after 48 hours Xoo infection. Table S11. Combined analysis of DE lncRNAs with DE miRNAs and DE mRNAs. Table S12. DE genes confirmed by RT-qPCR assays. Table S13. DE miRNAs confirmed by RT-qPCR assays. Table S14. List of all primers.
DOI: 10.6084/m9.figshare.26605519
title: Additional file 6 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 6: Table. S6 The comparison of 7 susceptible genes with other featured genes.
DOI: 10.6084/m9.figshare.26605516
title: Additional file 5 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 5: Table. S5 The KEGG pathway of 278 DEGs.
DOI: 10.6084/m9.figshare.26605507.v1
title: Additional file 2 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 2: Table. S2 CAD-related and RA-related genes in 3 disease databases.
DOI: 10.6084/m9.figshare.26605507
title: Additional file 2 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 2: Table. S2 CAD-related and RA-related genes in 3 disease databases.
DOI: 10.6084/m9.figshare.26605522.v1
title: Additional file 7 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 7: Table. S7 The proximity between genes and CAD&RA-related diseases genes
DOI: 10.6084/m9.figshare.26605504
title: Additional file 1 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 1: Table. S1 278 differentially expressed genes.
DOI: 10.6084/m9.figshare.26605513
title: Additional file 4 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 4: Table. S4 The common and unique GO items between modules.
DOI: 10.6084/m9.figshare.26605522
title: Additional file 7 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 7: Table. S7 The proximity between genes and CAD&RA-related diseases genes
DOI: 10.6084/m9.figshare.26605504.v1
title: Additional file 1 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 1: Table. S1 278 differentially expressed genes.
DOI: 10.6084/m9.figshare.26605510
title: Additional file 3 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 3: Table. S3 The relationship between gene and module.
DOI: 10.6084/m9.figshare.26605510.v1
title: Additional file 3 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 3: Table. S3 The relationship between gene and module.
DOI: 10.6084/m9.figshare.26605519.v1
title: Additional file 6 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 6: Table. S6 The comparison of 7 susceptible genes with other featured genes.
DOI: 10.6084/m9.figshare.26605516.v1
title: Additional file 5 of Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis

description: Supplementary Material 5: Table. S5 The KEGG pathway of 278 DEGs.
DOI: 10.15468/dl.8fhhnc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.554277 -32.60055, 147.554277 -32.602796, 147.556523 -32.602796, 147.556523 -32.60055, 147.554277 -32.60055))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067124-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26672923
title: Feminist Identity and Online Activism

description: The three surveys were completed in September to November 2019, February 2021, and January 2023 in the US, UK, France, and Canada. The total sample size is 18,362.
DOI: 10.6084/m9.figshare.26672923.v1
title: Feminist Identity and Online Activism

description: The three surveys were completed in September to November 2019, February 2021, and January 2023 in the US, UK, France, and Canada. The total sample size is 18,362.
DOI: 10.15468/dl.ntegah
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudabutilon depauperatum (Hook.fil.) Kearney"
 ]
}

 The dataset includes 164 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067127-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nktqjb
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amborellaceae"
 ]
}

 The dataset includes 523 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067126-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t73yhf
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Brosimum acutifolium Huber)"
 ]
}

 The dataset includes 628 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067125-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13323841
title: benmarhnia-lab/synergistic_effect_wildfire_extremeheat_ca: dataset

description: This repository contains sharable datasets for the publication below. The related codes are in a different github repository: https://github.com/benmarhnia-lab/synergistic_effect_wildfire_extremeheat_ca.

Chen C, Schwarz L, Rosenthal N, Marlier ME, Benmarhnia T. Exploring spatial heterogeneity in synergistic effects of compound climate hazards: Extreme heat and wildfire smoke on cardiorespiratory hospitalizations in California. Sci Adv. 2024;10(5):eadj7264. doi:10.1126/sciadv.adj7264

Here is a list of the datasets included:

"zcta_list_eh85_wf15_binary_1772zcta.csv" contains a list of California zctas with exposure and health data available for our analyses.

"census_2010_pop.csv" contains zcta centroids and popualtion (2010 census).

"zip_selected_hpi3_hpi_wt_041823_clean.csv" contains zcta-specific Healthy Places Index data after cleaning.

"eh85_wf15_binary_1772zcta_0619.rds" contains exposure time-series data.
DOI: 10.5281/zenodo.13323842
title: benmarhnia-lab/synergistic_effect_wildfire_extremeheat_ca: dataset

description: This repository contains sharable datasets for the publication below. The related codes are in a different github repository: https://github.com/benmarhnia-lab/synergistic_effect_wildfire_extremeheat_ca.

Chen C, Schwarz L, Rosenthal N, Marlier ME, Benmarhnia T. Exploring spatial heterogeneity in synergistic effects of compound climate hazards: Extreme heat and wildfire smoke on cardiorespiratory hospitalizations in California. Sci Adv. 2024;10(5):eadj7264. doi:10.1126/sciadv.adj7264

Here is a list of the datasets included:

"zcta_list_eh85_wf15_binary_1772zcta.csv" contains a list of California zctas with exposure and health data available for our analyses.

"census_2010_pop.csv" contains zcta centroids and popualtion (2010 census).

"zip_selected_hpi3_hpi_wt_041823_clean.csv" contains zcta-specific Healthy Places Index data after cleaning.

"eh85_wf15_binary_1772zcta_0619.rds" contains exposure time-series data.
DOI: 10.25318/3210003001-fra
title: Exploitations agricoles classées selon le type d’exploitation agricole et la catégorie de revenu du ménage, Couplage Agriculture–Population, 2016, inactif

description: Couplage Agriculture–Population, 2016. Exploitations agricoles classées selon le type d’exploitation agricole et la catégorie de revenu du ménage. Le type d'exploitation est basé sur le Système de Classification des Industries de l'Amérique du Nord (SCIAN).
DOI: 10.15468/dl.zg8hjt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.544674 -32.602796, 148.544674 -32.609533, 148.549166 -32.609533, 148.549166 -32.602796, 148.544674 -32.602796))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067128-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26673441.v1
title: Additional file 2 of Molecular epidemiology of pregnancy using omics data: advances, success stories, and challenges

description: Additional file 2. Comprehensive literature review of omics research in pregnancy.
DOI: 10.6084/m9.figshare.26673441
title: Additional file 2 of Molecular epidemiology of pregnancy using omics data: advances, success stories, and challenges

description: Additional file 2. Comprehensive literature review of omics research in pregnancy.
DOI: 10.25318/3210003001-eng
title: Farms classified by farm type and household income class, Agriculture–Population Linkage, 2016, inactive

description: Agriculture–Population Linkage, 2016. Farms classified by farm type and household income class. Farm type is based on the North American Industrial Classification System (NAICS).
DOI: 10.6084/m9.figshare.26570152
title: Additional file 2 of Elevated atmospheric CO2 concentrations caused a shift of the metabolically active microbiome in vineyard soil

description: Additional file 2: Table S2. Chemical and soil respiration results from the Geisenheim VineyardFACE
DOI: 10.15468/dl.qwp7b7
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pristimantis juanchoi (Lynch, 1996)"
 ]
}

 The dataset includes 62 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044960-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qxf64
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeocarpus auricomus C.Y.Wu"
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033114-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52p43h
title: Occurrence Download

description: A dataset containing 1779 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Phylloscopus goodsoni Hartert, 1910"
 ]
}

 The dataset includes 1779 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053381-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exmxsv
title: Occurrence Download

description: A dataset containing 861 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Percentage of Coccolithus pelagicus vs. Reticulofenestra spp. of ODP Hole 120-747A"
 ]
}

 The dataset includes 861 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010095-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzb7sj
title: Occurrence Download

description: A dataset containing 5131 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Asthenes ottonis (Berlepsch, 1901)"
 ]
}

 The dataset includes 5131 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033027-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4c23dy
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhincodon typus Smith, 1828",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 540 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010095-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63fcsg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pulchrana guttmani (Brown, 2015)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044973-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzbzh2
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Doratoxylon littorale Capuron"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033127-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dm6xbw
title: Occurrence Download

description: A dataset containing 2927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calyptraea chinensis (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 2927 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044950-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqtclw
title: Occurrence Download

description: A dataset containing 481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solanum viarum Dunal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 481 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010095-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgbx33
title: Occurrence Download

description: A dataset containing 1545 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Thripophaga fusciceps P.L.Sclater, 1889"
 ]
}

 The dataset includes 1545 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033086-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22trd6
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Xenopus gilli Rose & Hewitt, 1927"
 ]
}

 The dataset includes 58 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045000-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnnakk
title: Occurrence Download

description: A dataset containing 218659300 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 218659300 records from 14168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030074-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0188123.10fu
title: SH0188123.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.