cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.20038154.v1
title: Supplementary information files for What have we learnt from quantitative case reports of acute lateral ankle sprains injuries and episodes of ‘giving-way’ of the ankle joint, and what shall we further investigate?

description: Supplementary information files for article What have we learnt from quantitative case reports of acute lateral ankle sprains injuries and episodes of ‘giving-way’ of the ankle joint, and what shall we further investigate? <br> Lateral ankle sprains are a commonly incurred injury in sports. They have a high recurrence rate and can lead to the development of persistent injury associated symptoms. We performed a quantitative synthesis of published case reports documenting the kinematics of acute lateral ankle sprains and episodes of “giving-way” of the ankle joint to provide a comprehensive description of the mechanisms. A systematic literature search was conducted to screen records within MEDLINE® and EMBASE® . Additional strategies included manual search of specific journals as well as contacting researchers in relevant communities to retrieve unpublished data. Twenty-four cases were included in the quantitative synthesis; 11 from individual case reports and 13 from four separate case series. Two authors independently reviewed all articles and extracted ankle joint kinematic data. Excessive ankle inversion was the most pronounced kinematic pattern observed across all included cases, with a mean peak inversion angle of 67.5° (range 2.0 to 142) and a mean peak inversion velocity of 974°/s (range 468 to 1752). This was followed by internal rotation and plantar flexion, respectively. A homogeneous linear function revealed a mean inversion velocity across all cases of 337°/s (range 117 to 1400; R<sup>2</sup> =0.78; p&lt;0.0001).
DOI: 10.17028/rd.lboro.20038154
title: Supplementary information files for What have we learnt from quantitative case reports of acute lateral ankle sprains injuries and episodes of ‘giving-way’ of the ankle joint, and what shall we further investigate?

description: Supplementary information files for article What have we learnt from quantitative case reports of acute lateral ankle sprains injuries and episodes of ‘giving-way’ of the ankle joint, and what shall we further investigate? <br> Lateral ankle sprains are a commonly incurred injury in sports. They have a high recurrence rate and can lead to the development of persistent injury associated symptoms. We performed a quantitative synthesis of published case reports documenting the kinematics of acute lateral ankle sprains and episodes of “giving-way” of the ankle joint to provide a comprehensive description of the mechanisms. A systematic literature search was conducted to screen records within MEDLINE® and EMBASE® . Additional strategies included manual search of specific journals as well as contacting researchers in relevant communities to retrieve unpublished data. Twenty-four cases were included in the quantitative synthesis; 11 from individual case reports and 13 from four separate case series. Two authors independently reviewed all articles and extracted ankle joint kinematic data. Excessive ankle inversion was the most pronounced kinematic pattern observed across all included cases, with a mean peak inversion angle of 67.5° (range 2.0 to 142) and a mean peak inversion velocity of 974°/s (range 468 to 1752). This was followed by internal rotation and plantar flexion, respectively. A homogeneous linear function revealed a mean inversion velocity across all cases of 337°/s (range 117 to 1400; R<sup>2</sup> =0.78; p&lt;0.0001).
DOI: 10.6084/m9.figshare.12056349.v1
title: Analysis of genotype × environment interaction for seed yield in spring oilseed rape using the AMMI model

description: Abstract In order to assess the genotype by environment interaction (GE) and select genotypes to exploit narrow and broad adaptations, twenty-two spring oilseed rape genotypes were subjected to field surveys at five experimental sites in the 2015-16 and 2016-17 growing seasons. Plant materials were sown in the form of a randomized complete block design with three replicates. The additive main effects and multiplicative interaction (AMMI) model was used to determine the genotype, environment, and GE effects. The sum of squares (SS) for the first three interaction principal components was very close to the SS for the GE signal; therefore, AMMI3 was diagnosed as the most accurate model to optimize predictive accuracy. SAN48 had the highest broad adaptability. In total, the chances of increasing yield were 55.80% from broad adaptations, 26.73% from narrow adaptations with 4 mega-environments, and an additional 17.47% from narrow adaptations with 5 mega-environments.
DOI: 10.6084/m9.figshare.12056349
title: Analysis of genotype × environment interaction for seed yield in spring oilseed rape using the AMMI model

description: Abstract In order to assess the genotype by environment interaction (GE) and select genotypes to exploit narrow and broad adaptations, twenty-two spring oilseed rape genotypes were subjected to field surveys at five experimental sites in the 2015-16 and 2016-17 growing seasons. Plant materials were sown in the form of a randomized complete block design with three replicates. The additive main effects and multiplicative interaction (AMMI) model was used to determine the genotype, environment, and GE effects. The sum of squares (SS) for the first three interaction principal components was very close to the SS for the GE signal; therefore, AMMI3 was diagnosed as the most accurate model to optimize predictive accuracy. SAN48 had the highest broad adaptability. In total, the chances of increasing yield were 55.80% from broad adaptations, 26.73% from narrow adaptations with 4 mega-environments, and an additional 17.47% from narrow adaptations with 5 mega-environments.
DOI: 10.6084/m9.figshare.12056361
title: Genetic parameters and selection of sugarcane for borer resistance in the advanced selection stage

description: Abstract This study aimed to investigate genetic parameters and selection strategies for sugarcane resistance to borer and determine the effects of selection for borer resistance on yield traits. The infestation index by borer (IIB) and yield traits were assessed over 3 years in 35 sugarcane clones planted in four locations in southeastern Brazil. There was no genotype × environment (year or location) interaction for borer resistance. Consequently, selection may be performed at only one location and year or by the mean of clones in several locations and/or years. The borer population affected the genotypic variance for borer resistance but when genotypic variance was significant, heritability was elevated and suitable genetic gain was achieved. Selection for borer resistance reduced the genetic gains for tons of cane per hectare, theoretical recoverable sugar, and tons of sugar per hectare; however, satisfactory selection gains for both borer resistance and yield were achieved using selection index.
DOI: 10.6084/m9.figshare.12056361.v1
title: Genetic parameters and selection of sugarcane for borer resistance in the advanced selection stage

description: Abstract This study aimed to investigate genetic parameters and selection strategies for sugarcane resistance to borer and determine the effects of selection for borer resistance on yield traits. The infestation index by borer (IIB) and yield traits were assessed over 3 years in 35 sugarcane clones planted in four locations in southeastern Brazil. There was no genotype × environment (year or location) interaction for borer resistance. Consequently, selection may be performed at only one location and year or by the mean of clones in several locations and/or years. The borer population affected the genotypic variance for borer resistance but when genotypic variance was significant, heritability was elevated and suitable genetic gain was achieved. Selection for borer resistance reduced the genetic gains for tons of cane per hectare, theoretical recoverable sugar, and tons of sugar per hectare; however, satisfactory selection gains for both borer resistance and yield were achieved using selection index.
DOI: 10.6084/m9.figshare.12056364
title: Response of common bean progenies for water use efficiency

description: Abstract Our aim in this study was to evaluate common bean progenies for water use efficiency (WUE) and verify if selection carried out under conditions without water limitation reflects the selection carried out under stress conditions. Eighty progenies from the BRSMG Talismã x G4280 cross and 80 from the BRSMG Talismã x G6492 cross were evaluated with high water availability (HWA) and low water availability (LWA) in two locations and two years. Genetic variance, heritability, accuracy, expected gain from selection, correlated response to selection, genetic correlation between HWA and LWA and between the two traits evaluated, and risk index in the recommendation (RI) were estimated. Some progenies had a RI close to zero, were tolerant in LWA, and were responsive in HWA. Progenies with high grain yield and WUE could be identified. The two conditions of evaluation were equally efficient for selection, as verified by estimates of expected gains from selection.
DOI: 10.6084/m9.figshare.12056364.v1
title: Response of common bean progenies for water use efficiency

description: Abstract Our aim in this study was to evaluate common bean progenies for water use efficiency (WUE) and verify if selection carried out under conditions without water limitation reflects the selection carried out under stress conditions. Eighty progenies from the BRSMG Talismã x G4280 cross and 80 from the BRSMG Talismã x G6492 cross were evaluated with high water availability (HWA) and low water availability (LWA) in two locations and two years. Genetic variance, heritability, accuracy, expected gain from selection, correlated response to selection, genetic correlation between HWA and LWA and between the two traits evaluated, and risk index in the recommendation (RI) were estimated. Some progenies had a RI close to zero, were tolerant in LWA, and were responsive in HWA. Progenies with high grain yield and WUE could be identified. The two conditions of evaluation were equally efficient for selection, as verified by estimates of expected gains from selection.
DOI: 10.6084/m9.figshare.12056922
title: ‘BRS Cainguá’, a blackberry fresh-market cultivar

description: Abstract One of the reasons for the low market demand of blackberries in Brazil is the acid taste of the fresh fruit. The fruits of the newly released cultivar BRS Cainguá taste better and have a very attractive shape.
DOI: 10.6084/m9.figshare.12056922.v1
title: ‘BRS Cainguá’, a blackberry fresh-market cultivar

description: Abstract One of the reasons for the low market demand of blackberries in Brazil is the acid taste of the fresh fruit. The fruits of the newly released cultivar BRS Cainguá taste better and have a very attractive shape.
DOI: 10.6084/m9.figshare.12056946
title: BRS Jaspe: a processing peach cultivar for low chill areas

description: Abstract The Embrapa peach breeding program provides a processing peach cultivar, 'BRS Jaspe'. Over the years, the yield of this cultivar was stable and its fruits can be harvested by mid-November and have a good size and taste. It may represent an alternative to cultivar Granada, with a similar maturation period.
DOI: 10.6084/m9.figshare.12056946.v1
title: BRS Jaspe: a processing peach cultivar for low chill areas

description: Abstract The Embrapa peach breeding program provides a processing peach cultivar, 'BRS Jaspe'. Over the years, the yield of this cultivar was stable and its fruits can be harvested by mid-November and have a good size and taste. It may represent an alternative to cultivar Granada, with a similar maturation period.
DOI: 10.6084/m9.figshare.12056919
title: SCS124 Sardo: Brazilian rice cultivar with excellent milling quality

description: Abstract SCS124 Sardo is a medium-maturing cultivar with an upright growth habit; intermediate lodging tolerance; moderate blast resistance; high grain yield potential; and long, thin grains with excellent cooking and sensory quality, especially for white milled rice. It is suitable for parboiling and recommended for all regions of the state of Santa Catarina, Brazil.
DOI: 10.6084/m9.figshare.12056919.v1
title: SCS124 Sardo: Brazilian rice cultivar with excellent milling quality

description: Abstract SCS124 Sardo is a medium-maturing cultivar with an upright growth habit; intermediate lodging tolerance; moderate blast resistance; high grain yield potential; and long, thin grains with excellent cooking and sensory quality, especially for white milled rice. It is suitable for parboiling and recommended for all regions of the state of Santa Catarina, Brazil.
DOI: 10.6084/m9.figshare.12056934
title: ‘BRS 421’ and ‘BRS 423’: high oleic peanut cultivars for production in Brazil

description: Abstract ‘BRS 421’ and ‘BRS 423’ are high-oleic runner type peanut cultivars, adapted to the main peanut-producing areas in Brazil and partially resistant to spotted wilt. ‘BRS 421’ has a medium cycle and large seed size, while BRS ‘423’ has a short cycle and regular runner seed size.
DOI: 10.6084/m9.figshare.12056934.v1
title: ‘BRS 421’ and ‘BRS 423’: high oleic peanut cultivars for production in Brazil

description: Abstract ‘BRS 421’ and ‘BRS 423’ are high-oleic runner type peanut cultivars, adapted to the main peanut-producing areas in Brazil and partially resistant to spotted wilt. ‘BRS 421’ has a medium cycle and large seed size, while BRS ‘423’ has a short cycle and regular runner seed size.
DOI: 10.6084/m9.figshare.12056952
title: ‘Gametes Simulator’: a multilocus genotype simulator to analyze genetic structure in outbreeding diploid species

description: Abstract Bulk sampling and subsequent DNA fingerprinting are applied to obtain estimated allelic frequency data and unveil population structure for outbreeding species. We developed ‘Gametes Simulator’, a routine to simulate gametes from allelic frequencies of unlinked loci, which enables the analysis of population structure through Bayesian analysis. Based on the allelic frequencies in the populations, the software simulates the alleles per population in the right proportions and assigns one allele per marker to each gamete following Mendel’s laws that govern gametogenesis.
DOI: 10.6084/m9.figshare.12056952.v1
title: ‘Gametes Simulator’: a multilocus genotype simulator to analyze genetic structure in outbreeding diploid species

description: Abstract Bulk sampling and subsequent DNA fingerprinting are applied to obtain estimated allelic frequency data and unveil population structure for outbreeding species. We developed ‘Gametes Simulator’, a routine to simulate gametes from allelic frequencies of unlinked loci, which enables the analysis of population structure through Bayesian analysis. Based on the allelic frequencies in the populations, the software simulates the alleles per population in the right proportions and assigns one allele per marker to each gamete following Mendel’s laws that govern gametogenesis.
DOI: 10.6084/m9.figshare.12056478
title: Genetic determination of characteristics related to semi-mechanized coffee harvests

description: Abstract Brazilian coffee cultivation was boosted over the last few decades by the mechanization of various field operations. Considering the influence of genetic factors on coffee harvesting efficiency, we aimed to evaluate the use of mechanized harvesting characteristics as a criterion to select progenies derived from ‘Icatu’ germplasm, previously evaluated for agronomic characteristics, resistance to rust and cercosporiosis. We also investigated genotypic and phenotypic correlations between semi-mechanized harvesting characteristics. Ten progenies of Coffea arabica L. were analyzed in two experimental farms during two consecutive harvests. Genetic parameters were evaluated to trace selection strategies. Four progenies that were suitable for mechanization were selected, supporting our hypothesis of the use of harvest characteristics as selection criteria.
DOI: 10.6084/m9.figshare.12056478.v1
title: Genetic determination of characteristics related to semi-mechanized coffee harvests

description: Abstract Brazilian coffee cultivation was boosted over the last few decades by the mechanization of various field operations. Considering the influence of genetic factors on coffee harvesting efficiency, we aimed to evaluate the use of mechanized harvesting characteristics as a criterion to select progenies derived from ‘Icatu’ germplasm, previously evaluated for agronomic characteristics, resistance to rust and cercosporiosis. We also investigated genotypic and phenotypic correlations between semi-mechanized harvesting characteristics. Ten progenies of Coffea arabica L. were analyzed in two experimental farms during two consecutive harvests. Genetic parameters were evaluated to trace selection strategies. Four progenies that were suitable for mechanization were selected, supporting our hypothesis of the use of harvest characteristics as selection criteria.
DOI: 10.6084/m9.figshare.20038509
title: Breeding for PVY resistance in tobacco LJ911 using CRISPR/Cas9 technology

description: Abstract Potato virus Y (PVY) is one of the main diseases of tobacco (Nicotiana tabacum). Recent studies indicated that the Va gene (Ntab0942120) determines the susceptibility of the crop to PVY, and that the Va gene product interacts with the PVY genome-linked protein (VPg) to initiate the PVY genome translation process, which ultimately leads to the systemic infection of tobacco by the virus. In this research, tobacco cultivar LJ911 was used as receptor material for gene editing. Gene Va was knocked out through CRISPR/Cas9 technology, and transgene-free homozygous edited plants in the T1 generation were established. Pathology tests indicated that the edited plants had gained PVY resistance. Therefore, the edited materials generated in this study represent potentially useful genetic resources for breeding of PVY- resistant tobacco.
DOI: 10.6084/m9.figshare.20038509.v1
title: Breeding for PVY resistance in tobacco LJ911 using CRISPR/Cas9 technology

description: Abstract Potato virus Y (PVY) is one of the main diseases of tobacco (Nicotiana tabacum). Recent studies indicated that the Va gene (Ntab0942120) determines the susceptibility of the crop to PVY, and that the Va gene product interacts with the PVY genome-linked protein (VPg) to initiate the PVY genome translation process, which ultimately leads to the systemic infection of tobacco by the virus. In this research, tobacco cultivar LJ911 was used as receptor material for gene editing. Gene Va was knocked out through CRISPR/Cas9 technology, and transgene-free homozygous edited plants in the T1 generation were established. Pathology tests indicated that the edited plants had gained PVY resistance. Therefore, the edited materials generated in this study represent potentially useful genetic resources for breeding of PVY- resistant tobacco.
DOI: 10.6084/m9.figshare.20038510
title: Sequencing and gene expression studies for Al tolerance in contrasting genotypes of tropical maize

description: Abstract The aims of this study were to evaluate the homology of the ZmMATE1 and ZmMATE2 gene sequences with those deposited in the international banks of sequences and quantify the differential expression of the genes ZmMATE1, ZmMATE2, and ZmNrat1 in germplasms of landrace and hybrid maize under aluminum (Al) stress in minimal solution. Fifty-two hybrids from different companies and 50 landrace varieties were genotyped for the genes ZmMATE1 and ZmMATE2. For studies of gene expression, the tolerant (H 44 and V 18) and the sensitive (H 22 and V 25) genotypes were exposed to minimal solution containing 4 mg L-1 of Al for different periods (0, 1, 3, 6, 9, 12, 24, and 48 h). The results showed greater differential expression in the tolerant V 18 landrace variety of the gene ZmMATE1, indicating that exudation of citrate may be the main mechanism of Al tolerance in this genotype.
DOI: 10.6084/m9.figshare.20038510.v1
title: Sequencing and gene expression studies for Al tolerance in contrasting genotypes of tropical maize

description: Abstract The aims of this study were to evaluate the homology of the ZmMATE1 and ZmMATE2 gene sequences with those deposited in the international banks of sequences and quantify the differential expression of the genes ZmMATE1, ZmMATE2, and ZmNrat1 in germplasms of landrace and hybrid maize under aluminum (Al) stress in minimal solution. Fifty-two hybrids from different companies and 50 landrace varieties were genotyped for the genes ZmMATE1 and ZmMATE2. For studies of gene expression, the tolerant (H 44 and V 18) and the sensitive (H 22 and V 25) genotypes were exposed to minimal solution containing 4 mg L-1 of Al for different periods (0, 1, 3, 6, 9, 12, 24, and 48 h). The results showed greater differential expression in the tolerant V 18 landrace variety of the gene ZmMATE1, indicating that exudation of citrate may be the main mechanism of Al tolerance in this genotype.
DOI: 10.6084/m9.figshare.20038516
title: Constitutive expression of a synthetic cry1Ab gene confers resistance to potato tuber moth (Phthorimaea operculella Zeller) larva

description: Abstract The potato tuber moth (Phthorimaea operculella Zeller) (PTM) is a destructive potato pest. Bacillus thuringiensis cry genes encode crystal proteins that have toxic characteristics against PTM. The aim of the present study was to develop a PTM resistant potato cv. Agria using the synthetic Bt cry1Ab gene. The transformation vector was constructed by inserting the cry1Ab gene into the pBI121 binary expression vector. The Agrobacterium tumefaciens strain AGL1 harboring the pBI35SCry1Ab construct was used for potato transformation. The results indicated that out of 97 putative transformed lines, 30 lines were PCR positive. Southern blot analysis revealed that one to three copies of transgenes were inserted into transgenic lines. The immunoassay test revealed the expression of the Cry protein. Furthermore, the results of bioassays confirmed the high mortality level of neonate larvae. The results of this study suggested that the transgenic lines have significant potential in pest control.
DOI: 10.6084/m9.figshare.20038516.v1
title: Constitutive expression of a synthetic cry1Ab gene confers resistance to potato tuber moth (Phthorimaea operculella Zeller) larva

description: Abstract The potato tuber moth (Phthorimaea operculella Zeller) (PTM) is a destructive potato pest. Bacillus thuringiensis cry genes encode crystal proteins that have toxic characteristics against PTM. The aim of the present study was to develop a PTM resistant potato cv. Agria using the synthetic Bt cry1Ab gene. The transformation vector was constructed by inserting the cry1Ab gene into the pBI121 binary expression vector. The Agrobacterium tumefaciens strain AGL1 harboring the pBI35SCry1Ab construct was used for potato transformation. The results indicated that out of 97 putative transformed lines, 30 lines were PCR positive. Southern blot analysis revealed that one to three copies of transgenes were inserted into transgenic lines. The immunoassay test revealed the expression of the Cry protein. Furthermore, the results of bioassays confirmed the high mortality level of neonate larvae. The results of this study suggested that the transgenic lines have significant potential in pest control.