cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10458515
title: MOESM6 of Genetic dynamics in untreated CLL patients with either stable or progressive disease: a longitudinal study

description: Additional file 6: Table S6. SNPs and mutations described by dbSNP and COSMIC databases, respectively, and localized in the regions analyzed by Haloplex SureDesign.
DOI: 10.6084/m9.figshare.10458524.v1
title: MOESM7 of Genetic dynamics in untreated CLL patients with either stable or progressive disease: a longitudinal study

description: Additional file 7: Table S7. SNPs and mutations detected by Haloplex SureDesign Panel.
DOI: 10.6084/m9.figshare.10458515.v1
title: MOESM6 of Genetic dynamics in untreated CLL patients with either stable or progressive disease: a longitudinal study

description: Additional file 6: Table S6. SNPs and mutations described by dbSNP and COSMIC databases, respectively, and localized in the regions analyzed by Haloplex SureDesign.
DOI: 10.6084/m9.figshare.10458470
title: MOESM2 of Many continuous variables should be analyzed using the relative scale: a case study of β2-agonists for preventing exercise-induced bronchoconstriction

description: Additional file 2. The data sets used in this analysis, calculation of the 95% CIs for the ratios in Table 3, measurements from published figures to yield numerical extracted FEV1 values.
DOI: 10.6084/m9.figshare.10458470.v1
title: MOESM2 of Many continuous variables should be analyzed using the relative scale: a case study of β2-agonists for preventing exercise-induced bronchoconstriction

description: Additional file 2. The data sets used in this analysis, calculation of the 95% CIs for the ratios in Table 3, measurements from published figures to yield numerical extracted FEV1 values.
DOI: 10.6084/m9.figshare.10458362
title: MOESM25 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 25: Table S16. Phenylpropanoid biosynthesis DEPs fold change and PPI analysis.
DOI: 10.6084/m9.figshare.10458353
title: MOESM24 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 24: Table S15. PPI analysis of connectivity degree among groups.
DOI: 10.6084/m9.figshare.10458362.v1
title: MOESM25 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 25: Table S16. Phenylpropanoid biosynthesis DEPs fold change and PPI analysis.
DOI: 10.6084/m9.figshare.10458344
title: MOESM23 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 23: Table S14. KEGG analysis of RLB (D) vs ASB (N).
DOI: 10.6084/m9.figshare.10458353.v1
title: MOESM24 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 24: Table S15. PPI analysis of connectivity degree among groups.
DOI: 10.6084/m9.figshare.10458344.v1
title: MOESM23 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 23: Table S14. KEGG analysis of RLB (D) vs ASB (N).
DOI: 10.6084/m9.figshare.10458338
title: MOESM22 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 22: Table S13. KEGG analysis of RLB (D) vs DSB (M).
DOI: 10.6084/m9.figshare.10458329
title: MOESM21 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 21: Table S12. KEGG analysis of ASB (N) vs DSB (M).
DOI: 10.6084/m9.figshare.10458338.v1
title: MOESM22 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 22: Table S13. KEGG analysis of RLB (D) vs DSB (M).
DOI: 10.6084/m9.figshare.10458314
title: MOESM20 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 20: Table S11. GO analysis of RLB (D) vs ASB(N).
DOI: 10.6084/m9.figshare.10458329.v1
title: MOESM21 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 21: Table S12. KEGG analysis of ASB (N) vs DSB (M).
DOI: 10.6084/m9.figshare.10458314.v1
title: MOESM20 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 20: Table S11. GO analysis of RLB (D) vs ASB(N).
DOI: 10.6084/m9.figshare.10458299
title: MOESM19 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 19: Table S10. GO analysis of RLB (D) vs DSB (M).
DOI: 10.6084/m9.figshare.10458296
title: MOESM18 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 18: Table S9. GO analysis of ASB (N) vs DSB (M).
DOI: 10.6084/m9.figshare.10458299.v1
title: MOESM19 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 19: Table S10. GO analysis of RLB (D) vs DSB (M).
DOI: 10.6084/m9.figshare.10458290
title: MOESM17 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 17: Table S8. Total co-up plus co-down regulated DPEs among groups.
DOI: 10.6084/m9.figshare.10458284
title: MOESM16 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 16: Table S7. Co-down regulated DPEs among groups.
DOI: 10.6084/m9.figshare.10458287
title: MOESM3 of Mapping genomic regions affecting milk traits in Sarda sheep by using the OvineSNP50 Beadchip and principal components to perform combined linkage and linkage disequilibrium analysis

description: Additional file 3. Details on the SNP positions that exceed the genome-wide significance threshold of 0.05 for at least one trait. QTL region identifier; OAR Ovis aries autosomes; SNP name and Position (bp) name and position in base pairs of the significant SNP (from the ovine genome assembly v4.0); n. of significant traits number of traits for which the SNP exceeds the genome-wide threshold of 0.05 [−log10(p-value) &gt; 5.69]; -log10(p-value) negative logarithm of the p-value corresponding to the null hypothesis that the effects of principal components that explain 99% of the variability due to the Sarda base gametes (BHS) are zero; MY milk yield; FY fat yield; PY protein yield; FP fat content; PP protein content.
DOI: 10.6084/m9.figshare.10458296.v1
title: MOESM18 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 18: Table S9. GO analysis of ASB (N) vs DSB (M).
DOI: 10.6084/m9.figshare.10458290.v1
title: MOESM17 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 17: Table S8. Total co-up plus co-down regulated DPEs among groups.
DOI: 10.6084/m9.figshare.10458278
title: MOESM15 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 15 Table S6. Co-up regulated DPEs among groups.
DOI: 10.6084/m9.figshare.10458284.v1
title: MOESM16 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 16: Table S7. Co-down regulated DPEs among groups.
DOI: 10.6084/m9.figshare.10458287.v1
title: MOESM3 of Mapping genomic regions affecting milk traits in Sarda sheep by using the OvineSNP50 Beadchip and principal components to perform combined linkage and linkage disequilibrium analysis

description: Additional file 3. Details on the SNP positions that exceed the genome-wide significance threshold of 0.05 for at least one trait. QTL region identifier; OAR Ovis aries autosomes; SNP name and Position (bp) name and position in base pairs of the significant SNP (from the ovine genome assembly v4.0); n. of significant traits number of traits for which the SNP exceeds the genome-wide threshold of 0.05 [−log10(p-value) &gt; 5.69]; -log10(p-value) negative logarithm of the p-value corresponding to the null hypothesis that the effects of principal components that explain 99% of the variability due to the Sarda base gametes (BHS) are zero; MY milk yield; FY fat yield; PY protein yield; FP fat content; PP protein content.
DOI: 10.6084/m9.figshare.10458269
title: MOESM13 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 13: Table S4. The common DEPs among groups.
DOI: 10.6084/m9.figshare.10458278.v1
title: MOESM15 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 15 Table S6. Co-up regulated DPEs among groups.
DOI: 10.6084/m9.figshare.10458266
title: MOESM12 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 12: Table S3. Raw data of differentially expressed proteins among DSB-(M), ASB-(N), and RLB-(D).
DOI: 10.6084/m9.figshare.10458272
title: MOESM14 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 14: Table S5. Unique proteins in all top 10 up- and down-differentially expressed proteins between groups.
DOI: 10.6084/m9.figshare.10458266.v1
title: MOESM12 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 12: Table S3. Raw data of differentially expressed proteins among DSB-(M), ASB-(N), and RLB-(D).
DOI: 10.6084/m9.figshare.10458269.v1
title: MOESM13 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 13: Table S4. The common DEPs among groups.
DOI: 10.6084/m9.figshare.10458257
title: MOESM11 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 11: Table S2. Raw data of identified peptides in TMT quantitation.
DOI: 10.6084/m9.figshare.10458272.v1
title: MOESM14 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 14: Table S5. Unique proteins in all top 10 up- and down-differentially expressed proteins between groups.
DOI: 10.6084/m9.figshare.10458248
title: MOESM10 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 10: Table S1. Raw data of identified proteins in TMT quantitation.
DOI: 10.6084/m9.figshare.10458257.v1
title: MOESM11 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 11: Table S2. Raw data of identified peptides in TMT quantitation.
DOI: 10.6084/m9.figshare.10458248.v1
title: MOESM10 of Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

description: Additional file 10: Table S1. Raw data of identified proteins in TMT quantitation.
DOI: 10.6084/m9.figshare.10458179
title: MOESM9 of Wild-type Cu/Zn-superoxide dismutase is misfolded in cerebrospinal fluid of sporadic amyotrophic lateral sclerosis

description: Additional file 9. A spreadsheet with ELISA data was available in a Microsoft Excel file. In a “Standard curve” sheet, absorbance values at 490 nm for preparation of standard curves (i.e. Additional file 3: Figure S2) were summarized. Also, absorbance values at 490 nm in the sandwich ELISA on CSF were available in a “Absorbance” sheet. As described in the Methods, furthermore, absorbance values at 490 nm measured in the ELISA were substituted into equations fitted to standard curves (Additional file 3: Figure S2), and apparent amounts of SOD1 were summarized in an “Apparent amount” sheet (i.e. Figures 3 and 6). In all sheets, averages together with standard deviations of the observed data were shown.
DOI: 10.6084/m9.figshare.10458179.v1
title: MOESM9 of Wild-type Cu/Zn-superoxide dismutase is misfolded in cerebrospinal fluid of sporadic amyotrophic lateral sclerosis

description: Additional file 9. A spreadsheet with ELISA data was available in a Microsoft Excel file. In a “Standard curve” sheet, absorbance values at 490 nm for preparation of standard curves (i.e. Additional file 3: Figure S2) were summarized. Also, absorbance values at 490 nm in the sandwich ELISA on CSF were available in a “Absorbance” sheet. As described in the Methods, furthermore, absorbance values at 490 nm measured in the ELISA were substituted into equations fitted to standard curves (Additional file 3: Figure S2), and apparent amounts of SOD1 were summarized in an “Apparent amount” sheet (i.e. Figures 3 and 6). In all sheets, averages together with standard deviations of the observed data were shown.
DOI: 10.6084/m9.figshare.10458083
title: MOESM1 of Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements

description: Additional file 1. Table of operational taxonomic units with animal metadata and taxonomic classification.
DOI: 10.6084/m9.figshare.10458083.v1
title: MOESM1 of Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements

description: Additional file 1. Table of operational taxonomic units with animal metadata and taxonomic classification.
DOI: 10.6084/m9.figshare.10453319
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)<br>$1: Date of each earthquake<br>$2: Latitude (N)<br>$3: Longitude (E)<br>$4: Depth (km)<br>$5: Magnitude (Japan Metrological Agency)<br>$6: The number of stations<br>t* data of each ray path (number of columns = 2)<br>$1: Name of each station<br>$2: t*
DOI: 10.6084/m9.figshare.10447922
title: Dataset for: Generalized Multiple Contrast Tests in Dose-Response Studies

description: In the process of developing drugs, proof-of-concept studies can be helpful in determining whether there is any evidence of a dose-response relationship. A global test for this purpose that has gained popularity is a component of the MCP-Mod procedure, which involves the specification of a candidate set of several plausible dose-response models. For each model, a test is performed for significance of an optimally chosen contrast among the sample means. An overall p-value is obtained from the distribution of the maximum of the contrast statistics. This is equivalent to basing the test on the minimum of the p-values arising from these contrast statistics and, hence, can be viewed as a method for combining dependent p-values. We generalize this idea to the use of different statistics for combining the dependent p-values, such as Fisher's combination method or the inverse normal combination method. Simulation studies show that the generalized multiple contrast tests (GMCTs) based on the Fisher and inverse normal methods are generally more powerful than the MCP-Mod procedure based on the minimum of the p-values except for cases where the true dose-response model is, in a sense, near the extremes of the candidate set of dose-response models. The proposed GMCTs can also be used for model selection and dosage selection by employing a closed testing procedure.
DOI: 10.6084/m9.figshare.10453319.v1
title: t*data_Kashiwagi&Nakajima2019.dat

description: README<br>Earthquake information (number of columns = 6)<br>$1: Date of each earthquake<br>$2: Latitude (N)<br>$3: Longitude (E)<br>$4: Depth (km)<br>$5: Magnitude (Japan Metrological Agency)<br>$6: The number of stations<br>t* data of each ray path (number of columns = 2)<br>$1: Name of each station<br>$2: t*
DOI: 10.6084/m9.figshare.10443347
title: PSE data (both experiments) 'emotional faces and biological motion study'

description: These are the resulting PSEs for each experiment.
DOI: 10.6084/m9.figshare.10438337
title: Optimization of the blanching time and temperature in the manufacture of Hass avocado pulp using low quality discarded fruits

description: Abstract In Peru, approximately 20% of the production of avocado var. Hass is discarded due to its low quality, and sold at low prices in local markets. The aim of this study was to optimize the blanching time and temperature to produce avocado pulp, using low quality discarded fruits as the raw material. The process was optimized using Response Surface Methodology with a 22 central composite rotational design (R2 ≥ 0.75; p &lt; 0.05). The independent variables studied were the blanching time (0, 1.5, 5, 8.5, 10 min) and temperature (65, 68, 75, 82, 85 °C), where the avocados were blanched by immersion (with peel), and the pulp extracted, processed, vacuum sealed (0.035 MPa) and stored under refrigeration at 5 °C for 49 days. The low quality discarded avocados were shown to be ideal for pulping, since 98% of the fruits had an oil content below 15% with an average pulp yield of 79.23%. The results indicated that longer blanching times and higher temperatures of above 5 min and 75 °C, respectively, retained the green colour and increased the brightness of the pulp, avoiding enzymatic browning. In addition, the increase in both contributed to the stability of the product acidity and pH level, extending its shelf life. However, in the sensory analysis, the pulp submitted to temperatures above 82 °C obtained the lowest scores for taste, odour and general acceptance due to the presence of a bitter taste and unpleasant odours in the pulp. The central point trials (5 min; 75 °C) presented the best scores for the independent variables such as colour, taste, odour and sensory texture, also showing good physicochemical stability with a shelf life of 37 days.
DOI: 10.6084/m9.figshare.10443347.v2
title: PSE data (both experiments) 'emotional faces and biological motion study'

description: These are the resulting PSEs for each experiment.
DOI: 10.6084/m9.figshare.10438337.v1
title: Optimization of the blanching time and temperature in the manufacture of Hass avocado pulp using low quality discarded fruits

description: Abstract In Peru, approximately 20% of the production of avocado var. Hass is discarded due to its low quality, and sold at low prices in local markets. The aim of this study was to optimize the blanching time and temperature to produce avocado pulp, using low quality discarded fruits as the raw material. The process was optimized using Response Surface Methodology with a 22 central composite rotational design (R2 ≥ 0.75; p &lt; 0.05). The independent variables studied were the blanching time (0, 1.5, 5, 8.5, 10 min) and temperature (65, 68, 75, 82, 85 °C), where the avocados were blanched by immersion (with peel), and the pulp extracted, processed, vacuum sealed (0.035 MPa) and stored under refrigeration at 5 °C for 49 days. The low quality discarded avocados were shown to be ideal for pulping, since 98% of the fruits had an oil content below 15% with an average pulp yield of 79.23%. The results indicated that longer blanching times and higher temperatures of above 5 min and 75 °C, respectively, retained the green colour and increased the brightness of the pulp, avoiding enzymatic browning. In addition, the increase in both contributed to the stability of the product acidity and pH level, extending its shelf life. However, in the sensory analysis, the pulp submitted to temperatures above 82 °C obtained the lowest scores for taste, odour and general acceptance due to the presence of a bitter taste and unpleasant odours in the pulp. The central point trials (5 min; 75 °C) presented the best scores for the independent variables such as colour, taste, odour and sensory texture, also showing good physicochemical stability with a shelf life of 37 days.
DOI: 10.6084/m9.figshare.10443347.v1
title: PSE data (both experiments)

description: These are the resulting PSEs for each experiment.
DOI: 10.6084/m9.figshare.10438259
title: Outcomes of segmental femoral artery pseudoaneurysm in patients with Behçet’s disease: a single center’s experience

description: Abstract Background Behçet's disease (BD) is an autoimmune condition that involves multiple systems. The most common arterial manifestation in BD patients is pseudoaneurysm, which has higher frequency than aneurysm formation. Objectives To clarify the importance of profunda femoris artery in BD pseudoaneurysm, and present a new method for identifying healthy segments for anastomosis. Methods Fifteen patients presented at a vascular department with pseudoaneurysms of the common femoral (CFA) and superficial femoral artery (SFA), were diagnosed with BD and underwent surgical intervention at Kasr al Ainy hospitals over 2 years. Results All patients were male. The patients ranged in age from 30 to 40 years (mean, 33.8±2.6 years). Mean duration of the disease was 5±3.4 years. Eight (53.3%) CFA graft interpositions, six (40%) mid SFA graft interpositions, and one (6.66) distal SFA graft interposition were performed. Eight (53.3%) of these operations were performed using Dacron graft and sartorius flap, three (20%) were performed with a polytetrafluoroethylene graft, and four (26.66) with a great saphenous vein graft. Two cases (13.33%) were accidentally discovered while four cases (26.66%) had short distance claudication, four cases (26.66%) had pain at rest, and five cases (33.33%) presented with pulsatile swelling correlated with pseudoaneurysm size (p = 0.005). Patients were followed-up over 1 year for new aneurysms and recurrence. Conclusions Surgical repair with muscle flap coverage, with or without ligation of profunda femoris artery, does not affect prognosis. An alternative method for identifying healthy segments of femoral artery may be frozen section and examination of the artery to decrease the risk of recurrence at the site of anastomosis.
DOI: 10.6084/m9.figshare.10438262
title: Production of Passion fruit in a semi-hydroponic system under protected cultivation

description: Abstract The objective of this research was to evaluate the production of passion fruit (Passiflora edulis Sims) cultivars in different nutrient solutions, using commercial Bioplant® substrate in slabs system in protected cultivation. A randomized complete block design in a factorial scheme was used with 2 passion fruit cultivars (Araguari and Yellow Master) x 4 nutrient solutions (solution 1, solution 2, solution 3 and solution 4), each plot consisting of 6 plants with 6 replications. Electrical conductivity evaluations in the slabs drained solution started at 15 days after seedling transplantation and the nutrient contents were quantified at the end of the research. In passion fruit, ether extract, crude fiber and crude protein were evaluated. Fruit number, pulp mass, peel thickness and gas exchange were evaluated. It was concluded that the use of nutrient solution 2 in cultivar Yellow Master, with 2.72 dS m-1 electrical conductivity and the use of nutrient solution 4 in cultivar Araguari, with 2.95 dS m-1 electrical conductivity, yielded the largest number of fruits, pulp mass, fruit mass and gas exchange, in slabs system in the protected cultivation of passion fruit.