cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25232441.v3
title: Raw Data Manuscript No. 3812653

description: This study aims to determine the effect of enriching feed with EPA (eicosapentaenoic acid) + DHA (docosahexaenoic acid) using fish oil on fatty acids content, whole-body carcass, growth, and feed efficiency in Asian redtail catfish Hemibagrus nemurus. The test samples comprised 180 juveniles weighing 35.29 ±0.75 g, which were divided into 4 groups. In addition, the samples were raised in 12 circular tarpaulin ponds, each containing 200 liters of water and 15 fish. The experiment consisted of 3 replicates, and feed was enriched with varying levels of EPA+DHA, namely 0 mg/kg (A1), 6,300 mg/kg (A2), 9,180 mg/kg (A3), and 12,600 mg/kg (A4). Fish were fed a daily portion equivalent to 5% of body weight, followed by analyses. The results showed that the enrichment of feed with varying levels of EPA+DHA using fish oil significantly influenced fatty acid compositions and whole-body carcass, as well as growth and feed efficiency (p&lt;0.05). The total n-3 content of feed increased from 5.55% to 8.46%, while the whole-body carcass experienced an increment from 2.66% to 3.45%. In addition, the total n-6 content decreased from 20.38% to 18.95%, with whole-body carcass experiencing a decrease from 15.53% to 10.56%. The results also showed that the DHA levels increased from 1.19% to 1.67% of the total fatty acids. In A4, the C20:5 n -3 (EPA) levels increased from 0.62 to 0.90%, while the C22:6 n-3 (DHA) levels increased from 1.19 to 1.93%. The final body weight and feed conversion of fish increased from 82.50 g to 104.50 g and 80.04% to 94.36%, respectively, while the lipid retention decreased from 152.38% to 133.51%. Based on these results, enrichment with 12,600 mg EPA+DHA using fish oil had proven to be beneficial in improving growth, fatty acids in carcass, and feed efficiency of Hemibagrus nemurus.
DOI: 10.6084/m9.figshare.25922164.v2
title: Chromosome-level genome assembly and annotation of <i>Flueggea virosa</i> (Phyllanthaceae)

description: Chromosome-level genome assembly and annotation of <i>Flueggea virosa</i> (Phyllanthaceae)
DOI: 10.6084/m9.figshare.28427852.v1
title: <b>Patterns of water mite and gregarine parasitism in </b><b><i>Ischnura heterosticta</i></b><b> (Odonata: Zygoptera) </b><b>damselfly populations and their impact on body condition</b>

description: Parasitism is a strong selective agent that affects host fitness, and parasitism may be variable across often broad landscapes and ecological gradients. However, variation may also within small geographic areas due local differences in habitat and climate. Here, we quantified prevalence and intensity of ectoparasite water mite (<i>Arrenurus </i>sp.) prevalence, and endoparasite gregarine (Apicomplexa: Protozoa) prevalence in Australian common bluetail damselflies (<i>Ischnura heterosticta</i>) between sexes and across three populations in Cairns, Australia. We found more than 42% of the damselflies coinfected with water mites and gregarines. Parasitism of either parasite varied between sexes, being higher in females and they differed between the three populations. Further, we investigated how parasitism is correlated with damselfly body size, mass and lipid content. Water mite parasitism was negatively correlated with host body mass and lipid content, however, gregarine infected males and females had better body condition. In conclusion, our study suggests that damselflies having larger body size are more frequently selected by parasites, however, the impact on body mass and lipid content might vary with parasite type.
DOI: 10.17632/jnyyk6s3yj
title: Determination of Response Uncertainty Factor for Gas Chromatography-Mass Spectrometry (GC-MS) Using 32 Polymer Extractable Compounds

description: This technical note describes the determination of an uncertainty factor in GC-MS based on various compounds which are extractables from polymers/medical devices. Standards are injected at known concentrations, responses measured and a database is created which allows estimation of uncertainty based on the standard deviation of the dataset. An uncertainty factor of 2.3 was found for the dataset analyzed. This uncertainty factor (rounded to 2) can be applied when screening for unknown material extractables compounds in order to estimate semi-quantitative amounts that are present without the analysis of an authentic reference standard for each species.
DOI: 10.17632/mnm63yggcv
title: Dataset of RSF scouring experiments on undisturbed soil samples on simulated rock-soil structure device

description: Rock surface flow (RSF), derived from secondary distribution of natural precipitation on exposed surfaces of bedrock outcrops. That drives the soils with extremely limited reserves lost from surface and underground through erosion. However, it is still a challenge to quantify the impact of rock surface flow on soil and water loss in a complex geotechnical environment. To achieve this, The RSF scouring experiment were conducted on these undisturbed soil samples on simulated rock-soil structure device which features the outcrop (exposed rock surface and unexposed RSI) and RSI undisturbed soil. Driving factors include the input flow volume on rock surface (RSFfv) and the inclination of rock surface (IRS). At the same time, our research shows that the erosion of rock surface flow leads to the underground leakage of soil. Therefore, the contribution of rock surface flow to soil erosion should be included in the soil erosion prediction model in karst, as it helps to enhance the accuracy and reliability of the models. as it helps to enhance the accuracy and reliability of the models.
DOI: 10.17632/p65tkrr89v
title: Empirical analysis of eukaryotic ER signal peptides

description: Content: - An excel file containing sequences from all experimentally verified eukaryotic signal peptides available on UniProtKB in May 2021, (as well as all human signal peptide sequences &gt;60 amino acids and selected cases from the literature), and probabilities for their respective n-, h-, and c-regions. - Signal peptide sequences were automatically extracted, and subjected to region probability prediction by the Hidden Markov models algorithm in SignalP 3.0. Additionally, all human entries were subjected to manual curation, whereby adjacent hydrophobic stretches were added to the h-region. - The data contains the following information content for 1,492 entries: UniProtKb identifier, review status, protein name, organism, taxonomic lineage, full protein sequence, experimental signal peptide sequence, experimental signal peptide length, predicted n-region sequence and length, predicted h-region sequence and length, predicted c-region sequence and length, experimental cleavage site, predicted cleavage site, difference between predicted and experimental cleavage site, prediction probability, author comment. Also contains the raw data pulled from UniProtKb and the raw output from SignalP 3.0. - The data has been separated into subsets with different cleavage site predictions and probabilities as well as different evolutionary lineages (found in different tabs of the excel file). The following tabs can be found: Summary; Cleavage site identical to experimental; Cleavage site different from experimental; Low probability; Humans (identical cleavage site); Humans (manually curated); Very long SPs; Vertebrates (identical cleavage site); Protostomes (identical cleavage site); Plants (identical cleavage site); Fungi(identical cleavage site). For each subset, the average and median length, standard deviation, and minimal/maximal length for each region are reported. Implications of the data: - The data shows that the length of eukaryotic h-regions is, by average and mean, 11 amino acids, with a maximum length of 14 amino acids for high-probability predictions (&gt;0.5). This is considerably shorter than the hydrophobic segments of non-cleaved transmembrane helices. - Further, the data show that the bulk of length variation in eukaryotic signal peptides stems from the h-region. - A substantial subset (19%) of the data show a different predicted and reported experimental cleavage site, for unclear reasons.
DOI: 10.6084/m9.figshare.20479851.v2
title: Data and related figures from a dense seismic array in the Gonghe Basin in the northeast Tibetan Plateau

description: Data and related figures in manuscript which titled ‘ Sediment structures of Gonghe Basin in the northeast Tibetan Plateau from teleseismic P wave and dense seismic array’
DOI: 10.6084/m9.figshare.21755415.v1
title: Distribution and antifungal susceptibility of Candida species isolated from clinical samples in southern Brazil

description: Abstract Invasive infections caused by Candida species have been strongly associated with poor prognosis and high resistance rates to some antifungals. This study aimed to identify Candida species isolated from different anatomical sites and to describe their susceptibility profile to antifungals. Ninety-four clinical isolates of Candida were obtained from a Medical Laboratory of Santa Catarina/Brazil. Species identification was performed by MALDI-TOF MS. Susceptibility assays were performed as described by Clinical Laboratory Standard Institute (CLSI) microboth method. Among the analyzed samples, C. albicans was the pathogen most incident (59.9%) followed by C. parapsilosis complex (14.9%), C. glabrata complex (8.5%), and C. tropicalis (6.3%). 37 Candida strains were isolated from vaginal content (39.3%), 21 from the nail (22.4%), 8 from tracheal aspirates (8.5%), and 7 from urine (7.4%). Together, the Candida isolates presented decreased susceptibility to azole drugs, mainly to fluconazole and itraconazole. Amphotericin B showed sensibility in 95.7% of samples analyzed. Previous knowledge about etiology and antifungal susceptibility becomes indispensable to conduct an efficient treatment.
DOI: 10.6084/m9.figshare.26088190.v1
title: Dataset for Evaluating Costs and Operations of Public Bus Fleet Electrification

description: Supplementary material for the paper "Evaluating Costs and Operations of Public Bus Fleet Electrification". The following data is included: 01) Detailed statistics on the transport operators included in the processed GTFS data from DELFI and the Mobility Database 02) Data on routes, trips, itineraries, stops and possible deadhead trips for the selected transport operators 03) Vehicle schedules and crew schedules, as well as charging plans for all scenarios analyzed 04) Costs, energy consumption and other key figures for the scenarios analyzedThe .zip file includes documentation and explanations for all the data.
DOI: 10.6084/m9.figshare.27992024.v1
title: Supplemental Resources Table related to the original article: Bone Marrow-Derived NGFR-Positive Dendritic Cells Regulate Arterial Remodeling.

description: Supplemental Resources Table related to the article: Bone Marrow-Derived NGFR-Positive Dendritic Cells Regulate Arterial Remodeling.Shinichiro Takashima, Soichiro Usui, Shintaro Matsuura, Chiaki Goten, Oto Inoue, Yusuke Takeda, Kosei Yamaguchi, Daiki Hashimuko, Yusuke Shinjo, Mitsuhiro Sugita, Keisuke Ohtani, Koji Kubota, Yoshio Sakai, Kenji Sakata, Masayuki Takamura
DOI: 10.17632/rrn8vpv8mj
title: Dataset of Estimation of reactive inorganic iodine fluxes in the Indian and Southern Ocean marine boundary layer

description: This dataset includes multi-axis differential optical absorption spectroscopy (MAX-DOAS) ship-based observations, meteorological observations during the 9th Indian Southern Ocean Expedition (ISOE-9), and all supporting dataset (observations from SK-333, BoBBLE cruise) used in the study Inamdar et al. (2020), https://acp.copernicus.org/preprints/acp-2019-1052 Links to other dataset repositories used in this study: 1. Observations of sea-surface iodide concentrations from Indian and Southern Ocean: British Oceanographic Data Centre, (Chance et al., 2019), http://doi.org/10/czhx 2. Global predicted sea-surface iodide concentration data is available from the Centre for Environmental Data Analysis, (Sherwen et al. 2019), http://doi.org/10.5285/02c6f4eea9914e5c8a8390dd09e5709a 3. Dataset from 8th Indian Southern Ocean Expedition (ISOE-8), (Mahajan et al. 2019a), https://doi.org/10.1016/j.aeaoa.2019.100016 4. Dataset from 2nd International Indian Ocean Expedition (ISOE-8), (Mahajan et al. 2019b), https://doi.org/10.1029/2018JD029063
DOI: 10.6084/m9.figshare.28279277.v1
title: <b>Information of patients </b>

description: <b>Information of patients</b>
DOI: 10.6084/m9.figshare.1245011.v1
title: Impacts of Distance from a Body of Water on Insect Abundance and Plant Species Richness

description: Insect abundance and plant richness were measured at the grassland east of Stong pond (43.770960, -79.506432) at York University. The experiment was conducted on October 14, 2014 on a clear, sunny day with a temperature of 22°C and on October 21, 2014 which was a colder, rainy day with a temperature of 7°C and an overcast sky. The researchers on this team were Reema Patel, Melanie de Sousa, Gurnit Atwal and Silvio Pacciti. A transect tape (~30m, or 100 inches) was laid out from the edge of the grassland going inwards towards the pond. Since one tape was not sufficient, two transect tapes were used and the total length was summed. The length from the grassland to the pond was measured to be about 60 metres, and this length was divided into 3 equal sections (~20m each), classified as closest to the pond, intermediate distance, and furthest from the pond. A sweep net that was 15 inches in diameter with a nylon mesh was used to sweep along a straight line along the 3 distances with the transect tape as a guide. At the end of each 20m mark, the sweeper would count how many insects were collected inside the net. A total of 20 sweeps were made in different portions of the grassland (10 each day), these sections were determined by moving from a starting point randomly selected, to 5m to the left. For each replicate, the transect was laid out again so the sweeper would know how far to sweep and when to tally the amount of insects collected. The insects were released one by one as each one was accounted for. For each sweep that was made, a 1m by 1m quadrat was laid out at the beginning and end of each section to measure plant richness. The measurements obtained from both the beginning and end of each section were averaged and recorded.
DOI: 10.6084/m9.figshare.13661294.v2
title: Characterization of soils conducive and non-conducive to Prunus replant disease

description: This is the datasets generated and analyzed during the current study. The dataset includes:1) unedited 16S rRNA ASVs count tables for V4 and V5-V7 of bacterial community2) unedited ITS1 and ITS2 region ASVs count tables of fungal community 3) unedited ITS1 region ASVs count table of oomycete community <br>
DOI: 10.6084/m9.figshare.25727637.v1
title: Understanding urban tree heat and drought stress

description: This study was conducted at an urban site in western Sydney, Australia to determine why certain urban trees were vulnerable to severe water stress and hydraulic failure. We measured environmental variables (i.e., soil volumetric water content, percentage of impervious surfaces), tree physiology (predawn and midday leaf water potential, maximum quantum yield of photosystem II), and growth of 19 urban tree species (n=3-10 trees per species) from 2019‒2023, spanning the extreme and subsequent three wet summers. Data are reported for individual trees (n=118 trees, including 28 stressed trees). For more details, see associated publication in .
DOI: 10.6084/m9.figshare.6367925.v1
title: The Long Walk to Knowledge: On the Determinants of Higher Education Mobility to Europe

description: This paper investigates the determinants of demand for higher education mobility from students in developing countries to Europe. Used together with various linguistic relations, we emphasise the relevance of informal and formal networks in explaining resistance to student migration. The former are made up of friends or previous students while the latter are formal partnerships that have been established among higher education institutions. Overall, our results show that, apart from the usual economic considerations, student mobility is strongly correlated with non-monetary factors specific to origin and destination, such as socio-demographic characteristics, individual beliefs, and institutional profiles.
DOI: 10.6084/m9.figshare.23576493.v6
title: FITS tables for torus reflection for xsstokes_torus

description: FITS tables for torus reflection suitable for XSPEC routine xsstokes_torus. Created from torus_integrator and XSPEC table model generator. For details see Podgorny et al., 2024 (https://arxiv.org/abs/2310.15647).
DOI: 10.6084/m9.figshare.4122558.v1
title: Supplementary Material for: Prey-Capture Strategies of Fish-Hunting Cone Snails: Behavior, Neurobiology and Evolution

description: The venomous fish-hunting cone snails <i>(Conus)</i> comprise eight distinct lineages evolved from ancestors that preyed on worms. In this article, we attempt to reconstruct events resulting in this shift in food resource by closely examining patterns of behavior, biochemical agents (toxins) that facilitate prey capture and the combinations of toxins present in extant species. The first sections introduce three different hunting behaviors associated with piscivory: ‘taser-and-tether', ‘net-engulfment' and ‘strike-and-stalk'. The first two fish-hunting behaviors are clearly associated with distinct groups of venom components, called cabals, which act in concert to modify the behavior of prey in a specific manner. Derived fish-hunting behavior clearly also correlates with physical features of the radular tooth, the device that injects these biochemical components. Mapping behavior, biochemical components and radular tooth features onto phylogenetic trees shows that fish-hunting behavior emerged at least twice during evolution. The system presented here may be one of the best examples where diversity in structure, physiology and molecular features were initially driven by particular pathways selected through behavior.<br>
DOI: 10.6084/m9.figshare.7831958.v1
title: Supplementary Data 2 for "Digital phenotyping by consumer wearables identifies sleep-associated markers of cardiovascular disease risk and biological aging"

description: All data and R code used in the study.<br>
DOI: 10.6084/m9.figshare.13769833.v1
title: Rat 7M Videos Subject 5 - Day 2

description: All videos for Subject 5, Day 2 in Rat 7M.<br><br>The video naming scheme is s{subject_id}-d{recording_day}-camera{camera_id}-{starting_frame_idx}.mp4.<br><br>Subject ID, recording day, and camera ID match videos to the data in the motion capture and camera calibration parameter .mat files.<br><br>Videos are provided in 3500 frame chunks, with the index of the starting frame in each file denoted by the {starting_frame_idx} portion of the filename.<br><br>Using the 'frames' field in the 'cameras' struct inside 'mocap.mat', the corresponding video file and frame index can be calculated by used frame_idx // 3500 to get the {starting_frame_idx} and frame_idx % 3500 to get the frame in that file. <br>
DOI: 10.6084/m9.figshare.7091075.v1
title: GeoODK_Carrasco-Escobar2018 Shapefile

description: Shapefile of raw data from GeoODK
DOI: 10.6084/m9.figshare.7603481.v1
title: Dataset containing incidental koala sightings in South East Queensland, Australia between 1997-2013.

description: This dataset consists of a single Excel spreadsheet, reporting the locations of incidental koala sightings in South East Queensland, Australia between 1997-2013.<br>The dataset was extracted from the KoalaBASE database, which was developed by the University of Queensland's School of Veterinary in collaboration with the Department of Environment and Science and is available at www.koalabase.com.au. The data which were extracted from KoalaBASE included geo-referenced sightings of live koalas by members of the public between 1997-2013, with records relating to koalas which were injured, dead or euthanised excluded from the analysis. <br>The aim of the related study was to describe spatial and temporal trends in koala presence, to estimate koala sighting density and to identify biases associated with sightings of koalas by members of the public.<br>The dataset consists of crowdsourced koala sightings data for South East Queensland, and includes the Local Government Areas (LGAs) of the sightings, and the month and the year that the sightings occurred. A total of 14,076 sightings are included in the dataset. The latitude-longitude data which had been available in the original data extracted from KoalaBASE have been removed from the dataset due to the status of koalas as a threatened species.<br>
DOI: 10.6084/m9.figshare.7820072.v1
title: H&E image

description: H&E staining image
DOI: 10.17632/jz726skp6d
title: Data for: Chapter 4 (Properties of and Charged Defects in ThO2) of the PhD Thesis - Large-Scale Density Functional Theory (DFT) Simulations of Lanthanide and Actinide Oxide Materials

description: This repository hosts computational data supporting the findings in Chapter 4 (Properties and Charged Defects) of the PhD thesis: Large-Scale Density Functional Theory (DFT) Simulations of Lanthanide and Actinide Oxide Materials in ThO2 by Nabeel Anwar. Supervised by Robert M. Harker, Mark T. Storr, Marco Molinari and Chris-Kriton Skylaris. Available from: https://eprints.soton.ac.uk/495909/.

UK Ministry of Defence © Crown owned copyright 2024/AWE
DOI: 10.6084/m9.figshare.26418238.v3
title: How Developers Choose Strategies for Debugging Challenging Web Application Defects

description: The replication package for the research study: How Developers Choose Strategies for Debugging Challenging Web Application Defects.Study 1: Survey developers of various experience about the challenging problems and the context of the problem that makes it challenging<b>Survey1</b> : asked developers to describe the most challenging problem they faced recently, the goal of the problem, what makes it challenging and the technologies they used. It also asked demographic questions about the participants experience.<br>Study 2: Interview professional developers about how they choose debugging strategies<b>IntroductionSlides:</b> the introduction of the definition of strategy, the list of debugging strategies, the definition of the context factors , and some examples. This should be shown to participant before the interview tasks.<b>Initial Codebook of Factors: </b>The factors that were extracted from previous works. This list was used as a preliminary codebook<b>DebuggingStrategies</b>: The list of debugging strategies extracted from the study 1 and the literature.<b>Phase1-WebProblems: </b>The two problems that used for the first phase of the interview. The participants answer the interview questions and any follow up questions for the two problems.<b>Pahse2-Problems</b>: The list of 10 challenging scenarios used in the second phase of the interview. Developer use this list to remember the similar challenging problem they faced in the past. Then they describe their problem and answer the interview questions for each problem.<b>InterviewQuestions: </b>The template for asking questions in the interview phases. <br>