cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/k3w7rtgvsp
title: Data for: Satellite interferometry for regional assessment of landslide hazard to pipelines in northeastern British Columbia, Canada

description: Supplementary information for the manuscript in the International Journal of Applied Earth Observation and Geoinformation "Satellite interferometry for regional assessment of landslide hazard to pipelines in northeastern British Columbia, Canada" by Sergey Samsonov and Andrée Blais-Stevens.

Content:
The RADARSAT-2-U15 and RADARSAT-2-U19 folders contain line-of-sight deformation rates, their standard deviations (1-sigma) and their coefficients of determinations (R2).
The Sentinel-1 folder contains vertical and horizontal east deformation rates, their standard deviations (1-sigma) and their coefficients of determinations (R2).
The hotspots folder contains the Z-score map for the entire region and the areas with absolute values of the Z-score greater than 20, plotted over the Sentinel-2 image. 
The dem folder contains dem figure that describes the area and data coverage.

Refer to the manuscript for a detailed description of the data, processing methodology and results.
DOI: 10.17632/nw46yjvrk2
title: Dataset_manuscript_Catena

description: Please, see the dataset used in the manuscript.
DOI: 10.17632/v26pw9hdn5
title: Supplementary data for: 'Mangrove organic matter accumulation in the context of sea-level history in coral reef settings of Australia'
DOI: 10.6084/m9.figshare.14347007.v1
title: REF_SPECIES.csv

description: List of tree species and species code (SPCD) modeled with Forest Inventory and Analysis data.<br>Column 1: SPCD (numeric species code used by FIA program)Column 2: COMMON_NAME (Common name of tree species)Column 3: GENUS (generic epithet of tree species)Column 4: SPECIES (specific epithet of tree species)Column 5: VARIETYColumn 6: SUBSPECIES
DOI: 10.6084/m9.figshare.25138691.v1
title: Fig.4_Files

description: Fig.4_Files
DOI: 10.6084/m9.figshare.28560008.v1
title: NIRSdata.rar

description: <b>中风后认知障碍的额极功能障碍和网络效率降低：一项 fNIRS 研究</b>摘要 目的： 认知障碍影响 8%-75% 的中风幸存者，并导致日常生活活动严重受损，仍然是全球医疗保健挑战。本研究采用双重任务范式施加特定的认知负荷，并利用功能性近红外光谱 （fNIRS） 研究中风患者在双重任务和静息状态下的皮质激活模式和功能连接，旨在阐明该人群认知障碍的病理生理机制。方法：纳入 28 名参与者：8 名无痴呆的中风后认知障碍 （PSCIND，低认知组） 患者，9 名无认知障碍的中风后 （PSNCI，高认知组） 患者和 11 名健康成人 （健康组）。除了高认知组和低认知组之间的病程 （p = 0.025） 外，各组之间的人口学特征匹配。参与者完成了四项任务：安静坐着、单次行走 （ST）、连续计数行走 （DT-low） 和向后计数行走 （DT-high）。fNIRS 测量氧合血红蛋白 （oxy-Hb） 浓度变化，以量化和比较认知亚组的前额叶皮层 （PFC） 激活模式、功能网络和图论指标。此外，还分析了前额叶网络拓扑与认知功能之间的相关性，以探讨临床相关性。结果：与 ST 和 DT 高条件相比，高认知组在 DT 低期间左额极区 （lFPA） 激活表现出电位差异 （p &lt; 0.05，p 校正&gt; 0.05）。与健康组相比，低认知组表现出以左侧额极区域为中心的功能连接改变。在对照组与低认知组 （p = 0.001） 和高认知组 （p = 0.002） 之间观察到聚类系数的显着差异。在所有参与者中，前额叶网络中归一化最短路径长度与 MoCA 分数呈线性相关 （R² = 0.274，p = 0.010）。结论： 具有不同认知功能的 STROKE 患者表现出不同的前额叶激活模式。以 lFPA 为枢纽的 PSCIND 患者功能连接受损，强调了该区域在 PSCI 中的关键作用。此外，基于图论的拓扑网络特性分析表明了中风患者认知评估的潜在价值，值得进一步研究。关键词：中风;中风后认知障碍;大脑激活;功能连接;功能近红外光谱仪 （fNIRS）
DOI: 10.6084/m9.figshare.7098551.v2
title: Treg and Tmem scRNA-seq across tissues - 10X

description: 10X data from Treg and Tmem from different mouse tissues.<br>10X_all_data_preQC.rdata - a Seurat object with the complete quantified 10x data<br>all_data_cl_metadata.csv - a .csv file with the all the metadata used in the manuscript. Cells not present here but present in 10X_all_data_preQC.rdata were removed with QC. Column "cl_allCells" represents clustering of all cells together, Column "cl_tiss" represents clustering per tissue.<br>velocyto_10X_merged.loom - a .loom file with the results from running velocyto, which can then be loaded and analysed
DOI: 10.6084/m9.figshare.26182940.v1
title: Descriptive data of MRT Users from Jakarta-Indonesia

description: An initiative to mitigate greenhouse gas (GHG) carbon dioxide (CO<sub>2</sub>) emissions within the transportation sector of DKI Jakarta involves the operation of the Mass Rapid Transit (MRT) system, with the primary objective is to encourage a substantial shift from private vehicle usage to the MRT among commuters. The purpose of this study is to calculate the reduction of greenhouse gas (GHG) and carbon dioxide (CO<sub>2</sub>) from shifting the use of private transportation to the MRT in DKI Jakarta.  Data collection was carried out by inventorying secondary data and surveying MRT users in 2019 as a baseline, which is the first year of operation of the Jakarta MRT Phase 1. Based on the results of the analysis using descriptive obtained survey results, as many as 53.8% of private transportation users who switched to using the MRT. The results of the analysis using the Clean Development Mechanism Approved Consolidated Methodology 0016 (CDM ACM 0016) method, which was implicated, showed CO<sub>2</sub> GHG emissions from private transportation that switched to using the MRT in 2019 were 16,706.7 tons of CO<sub>2</sub>, and direct emissions from the MRT project were 13,974.03 tons of CO<sub>2</sub>, so the value of emission reduction in 2019 was 2,732.7 tons of CO<sub>2</sub> per year. In 2023, the result of the CO<sub>2</sub> emission reduction value is 6,043.9 tons of CO<sub>2</sub>.
DOI: 10.6084/m9.figshare.26892781.v1
title: Fiducial segmentation models UNITY phantom

description: Trained nnUNet models for segmentation of fiducial spheres in the UNITY Phantom (CaliberMRI Mini-hybrid, model 137), specifically for data acquired with the Hyperfine Swoop, portable MRI system. The three models applies to different orientations. Data should be acquired using the Fast T2w sequences on the Swoop.model237.zip: Axialmodel337.zip: Sagittalmodel437.zip: CoronalFor further details about usage see UNITY ghost repository on github.TrainingThe models were trained using the nnUNet framework. The main steps and options used in the training are listed below. <code>$DATASET_ID</code> is the ID (237 etc) and <code>$fold</code> is either 0, 1, 2, 3, or 4. As recommended by the nnUNet documentation, the 0th fold is first trained and the remaining folds are then trained in parallel. <pre>&gt;&gt; nnUNetv2_plan_and_preprocess -d 237 337 437 -pl nnUNetPlannerResEncM --verify_dataset_integrity<br>&gt;&gt; nnUNetv2_train -device cuda -p nnUNetResEncUNetMPlans $DATASET_ID 3d_fullres $fold --npz<br>&gt;&gt; nnUNetv2_find_best_configuration $DATASET_ID -p nnUNetResEncUNetMPlans -c 3d_fullres <br>&gt;&gt; nnUNetv2_export_model_to_zip -d $DATASET_ID -f 0 1 2 3 4 -tr nnUNetTrainer -c 3d_fullres -p nnUNetResEncUNetMPlans -o $zip_out --exp_cv_preds</pre><br>The training data is composed of data from 17 sites, with one dataset from each. Data was manually labeled using 3D Slicer.
DOI: 10.17632/46y6j5k7n7
title: ACCOUNTING FOR SMALL AND  MEDIUM ENTERPRISES (SME) – A CONCEPTUAL FRAMEWORK

description: SMEs sector plays an important role in generating revenue and employment, lending economic stability to the country but accounting for SMEs has become a debateable issue throughout the world. A constant research studies is going on regarding this issue to overcome the problems arising out of it. A Jot of questions are arising regarding accounting for SMEs. Naturally a comparative study is needed to judge the relevance of accounting standards for SMEs of different countries and also with the IFRS. The present paper makes an attempt to give a conceptual framework regarding accounting for SMEs.
DOI: 10.17632/dh3hjdf4fc
title: Equilibrium point defect and charge carrier concentrations in a material determined through calculation of the self-consistent Fermi energy

description: A concise procedure to determine the self-consistent Fermi energy and defect and carrier concentrations in an extended crystalline system is presented. It is assumed that the formation enthalpies of a set of variously charged point defects in thermodynamic equilibrium are known, as well as the density of electronic states in the defect-free system. By applying the constraint of overall charge neutrality, the self-consistent Fermi energy is determined using an iterative searching routine. The procedure is incorporated within a Fortran code ‘SC-FERMI’: the input consists of the defect formation energies, density of sites where they can form, and the degeneracy of each charge state; the material band gap; and the calculated density of states of the pristine system. The output is the self-consistent Fermi energy, the total concentrations of each defect as well as the concentration of its individual charge states, and the free carrier concentrations. Furthermore, the procedure facilitates fixing the concentration of one or more defects and determining the resulting self-consistent Fermi energy and concentrations of other defects (performed using the related code ‘FROZEN-SC-FERMI’), thus modelling ‘frozen-in’ defects which may form by kinetic, rather than thermodynamic, processes. One can fix the total concentration or the concentration of a particular charge state; it is also possible to introduce new defects with a fixed concentration, but here the charge state must be specified. The background theory is discussed in some detail, and the operation of the program is demonstrated by some examples.
DOI: 10.17632/k4j689jfwj
title: MULTI-MODAL STIMULATIONS ON NEUROMOTOR RESPONSES AMONG THE HOSPITALISED PRETERM INFANTS

description: Contains 56 Preterm Infants data which includes, gestational age, chronological age, corrected gestational age, sex, birth weight, birth length, birth occipitofrontal circumference (OFC), APGAR at 1-min, and APGAR at 5-min, pre-post intervention (5 days) changes of weight, length, OFC, INFANIB (Infant Neurological International Battery) and NIPS (Neonatal Infant Pain Scale).
DOI: 10.17632/nn6tw9944k
title: Data for: Analysing the Systemic Risk of Indian Banks

description: Indian Banking sector data
DOI: 10.17632/rv3kxfv47y
title: Tomato Leaf Dataset

description: This data set has tomato diseased leaf images gathered across different farms located in Maharashtra. Images are acquired using different mobile camera models in order to introduce variability and classified by a team of Dr. Balasaheb Sawant Konkan Krishi Vidyapeeth,Dapoli,India. Images are captured by keeping paper in background to avoid background effects. This entire data set can be used to design system that can be used to automatic diseased detection.
DOI: 10.6084/m9.figshare.11920743.v1
title: Nutritional Information for DDCC and Fly Microbiome Diet Database

description: The files included in this upload are supplementary source files to the Fly Microbiome Diet Database and the Drosophila Dietary Composition Calculator.
DOI: 10.6084/m9.figshare.21829493.v1
title: The relationship between trauma, shame, and guilt: findings from a community-based study of refugee minors in Germany

description: The relationships between traumatic stress and self-conscious emotions, such as shame and guilt, remain to be fully explored, especially in refugees, who frequently are exposed to a multitude of stressors. The aim of the present study was to investigate shame and guilt in refugee minors and to assess to what extent a greater cumulative exposure to traumatic stressors would result not only in more severe posttraumatic stress disorder (PTSD) symptoms but also in higher levels of shame and guilt. Thirty-two male refugee minors, who were all below the age of 18 when they sought asylum in Germany, agreed to participate. At the time of the assessment, the age ranged from 11 to 20 years. Eighteen refugees had arrived without relatives in their host country (“unaccompanied minors”). In structured diagnostic interviews, a PTSD diagnosis was established using the UCLA PTSD Index. Posttraumatic guilt was assessed by means of the Trauma-related Guilt Inventory, and the Shame Variability Questionnaire was used to record the intensity, duration, and frequency of shame episodes. Feelings of guilt and shame as well as trauma symptoms were all associated with the number of traumatic event types subjects had experienced. Posttraumatic guilt and shame were both correlated with PTSD symptom severity. The findings indicate that cumulative stress such as exposure to multiple traumatic events poses a risk factor for the mental health including greater suffering and functional impairment due to shame and guilt.
DOI: 10.17632/584bmt6g8b
title: SHG India Dataset

description: Data set for SHG study done at a NGO in rural India.
DOI: 10.17632/ckjwpjwc6t
title: replication_file

description: This compressed file is a replication package for the paper "The Importance of Business Travel for Trade: Evidence from the Liberalization of the Soviet Airspace". It contains instructions, code, and data to replicate all descriptive and empirical results.
DOI: 10.17632/hvpc5cy7wf
title: A stable-carbon-isotope-based constrain of bulk particulate organic carbon dynamics and budgets in the Yellow Sea: Combining field surveys and isotope fractionation modeling

description: Raw data for all figures and models in the manuscript by Cong-cong Guo to be published by progress in oceanography as "A stable-carbon-isotope-based constrain of bulk particulate organic carbon dynamics and budgets in the Yellow Sea: Combining field surveys and isotope fractionation modeling"
DOI: 10.17632/z5khb77xyd
title: Forensic Genetic Genealogy Project v. JULY2024

description: This research seeks to collect all publicly available information concerning cases that were successfully cleared through forensic investigative genetic genealogy (FIGG), going back as far as possible in time and ending on July 31, 2023. 

Cases were selected for inclusion in the dataset through internet searches, discussion boards, as well as press releases and blog posts from private companies and non-profit organizations known to perform FIGG, publications devoted to advances in forensic science, and published court records. 

Cases were chosen for inclusion in the sample only if a public authority had confirmed that FIGG was used to clear the investigation, and the investigation met the following definition of FIGG:

1. Investigative Body: The investigation was led by a public, and not a private, authority, such as a law enforcement agency or a coroner/medical examiner’s office. 

2. Investigative Techniques: The investigation must use the techniques of genomics, computer database technologies, and traditional genealogy. Cases were included when family lineages were drawn out to at least three or more generations. The sample includes investigations that use Y-chromosome STR profiles and/or mitochondrial DNA profiles to trace the paternal and maternal lineages of persons of interest. Cases solved through familial searching of law enforcement databases were excluded from the sample, as this technique raises separate legal and ethical issues. 

3. Investigative Purpose: The investigation must be for a forensic purpose, meaning that the evidence thus produced is relevant to an ongoing legal dispute. Most cases considered here are for the identification of perpetrators of criminal offences or the identification of decedents but can also include the identification of living does. Not included in this data are cases that are of purely historical interest, or the identification of unknown soldiers by military authorities. The term ‘forensic genetic genealogy’ has been chosen for this project in preference to the broader, and more generic term ‘investigative genetic genealogy’, which has also been used, to highlight the fact that these investigations are directed towards an ongoing legal dispute before the public legal system. 

4. Causation: This database only includes cases that have been successfully cleared using FIGG. The resolution of any investigation – particularly very large and lengthy investigations as were many of the cases described in this data – has many causes. To be included here, the FIGG investigation must have played a significant causal role in the resolution of the case. 

More complete information about how the data was coded, as well as an annotated bibliography and a short digest of each case, can be found in the Code Book, included in previous versions of this project. You may read a short digest of each case cleared, including references for all data collected, in the Case Digests below.
DOI: 10.6084/m9.figshare.15147333.v1
title: Dependent variable (armed conflict incidence and armed conflict onset) and independent variables (stable background contexts and climate deviations related covariates)

description: This dataset is used to infer potential mechanism and simulate the risk of armed conflicts across worldwide from 2000-2015. The dataset includes dependent variable (armed conflict incidence and armed conflict onset) and independent variables (stable background contexts and climate deviations related covariates).
DOI: 10.6084/m9.figshare.22013369.v1
title: Supplementary Material for: High Expression of CD300A Predicts Poor Survival in Acute Myeloid Leukemia

description: Introduction: Recent studies have suggested that CD300A was an oncogene in acute myeloid leukemia (AML) development. However, the clinical relevance and biological insight into CD300A expression in AML are still not well understood. The present study aimed to examine the expression characteristics of CD300A in AML and confirmed its clinical significance for AML. Methods: Quantification of the CD300A transcript was performed in 119 AML patients by real-time quantitative PCR in bone marrow blasts. The predictive significance of CD300A expression on the clinical outcomes of AML was assessed using overall survival (OS) and relapse-free survival (RFS). The published Cancer Genome Atlas (TCGA) data were used as an external validation for survival analysis and pathway analyses. Results: In comparison to monocytes from healthy peripheral blood (PB) cells, the expression levels of CD300A in AML cells were higher. Patients in the intermediate and adverse risk categories by WHO criteria (2018) had higher CD300A expression levels than those in the favorable risk category (p &lt; 0.001). AML patients with high expression of CD300A had a higher early death (ED) rate (P=0.029), lower complete remission (CR) rate (p=0.042), higher death rate (p &lt; 0.001) and relapse rate (p=0.002), and shorter OS (p＜0.0001) and RFS (p＜0.0001). Through multivariable analysis, high CD300A expression in AML was also an independent poor prognostic factor. The CAMP and CGMP-PKG signaling pathways may be stimulated by increased CD300A expression levels, which may be important for the development of AML. Conclusions: The expression levels of CD300A were associated with risk stratification and the clinical relevance of AML. High CD300A expression may act as an independent adverse prognostic factor for OS and RFS in AML.
DOI: 10.6084/m9.figshare.28784762.v2
title: HADS MAGs from Long-read and Short-read Metagenomes

description: FASTA files for metagenome-assembled genomes (MAGs) reconstructed from short-read and long-read sequencing of the HADS metagenomes. They are the outputs of quite a preliminary effort, thus secondary attempts to recover genomes from the co-assemblies are most welcome (and very much encouraged). Please see the following URL for more information:https://merenlab.org/data/hads
DOI: 10.6084/m9.figshare.28877642.v1
title: Lineage-dependent variations in single-cell antibiotic susceptibility reveal the selective inheritance of phenotypic resistance in bacteria _ Raw data

description: Raw data associated with an published article.
DOI: 10.17632/27j8pgj5tp
title: Fatigue strength assessment of “as built” AlSi10Mg manufactured by SLM with different build orientations

description: This study investigated the effects of the ‘as-built’ condition on the fatigue properties of an AlSi10Mg aluminium alloy manufactured by Selective Laser Melting (SLM) in different orientations. The results showed a moderate correlation between defects/surface features at the fracture origin and the roughness measurements. On the other hand, a fatigue strength analysis based on the size of features at fracture origin and residual stress just below the surface proved to be successful. Although considering the synergistic effect of different variables increased the scatter in fatigue life data points, a fatigue strength model including short crack effect and residual stresses made it possible to estimate the EIFS close to the real critical features. This dataset contains the full details of experimental data for the paper: "Fatigue strength assessment of “as built” AlSi10Mg manufactured by SLM with different build orientations" by: S. Beretta , M. Gargourimotlagh , S. Foletti , A. du Plessis , M. Riccio International Journal of Fatigue 139 (2020) 105737 https://doi.org/10.1016/j.ijfatigue.2020.105737
DOI: 10.6084/m9.figshare.1183512.v6
title: Chessboard Dataset Low Magnification Overview Images

description: These are z-projections of ribbons imaged at 25x magnification for DAPI and YFP to serve as guides for subsequent higher-magnification imaging of desired subregions.
DOI: 10.6084/m9.figshare.28596653.v1
title: Supplementary Material for: Stroke Medicine is Frailty Medicine: Clinical and Research Priorities for Frailty in Stroke

description: Medicine
DOI: 10.6084/m9.figshare.6796736.v1
title: Supplementary Material for: 5’-AMP-Activated Protein Kinase Regulates Goat Sperm Functions via Energy Metabolism <b><i>In Vitro</i></b>

description: <b><i>Background/Aims:</i></b> ATP is essential for mammalian sperm to survive and maintain fertilizing capacity. AMP-activated protein kinase (AMPK) is a sensor of cellular energy status. The aims of the present study were to explore the localization of AMPK in goat sperm and to investigate whether and how AMPK regulates sperm functions <i>in vitro</i>. <b><i>Methods:</i></b> Sperm were treated with AMPK modulators (AICAR, metformin and Compound C) during incubation. Sperm motility was assessed with a computer-assisted spermatozoa analysis system (CASA). Membrane integrity, acrosome reaction and mitochondrial membrane potentials were detected by SYBR-14/PI, FITC-PNA and JC-1 staining, respectively. And the lactate content, ATP content, AMPK activity, activity of pyruvate kinase (PK) and lactate dehydrogenase (LDH) were also measured with the commercial assay kits. Immunofluorescence staining was used to analyze the distribution of PK, LDH, AMPK and phospho-Thr172-AMPK in sperm. The role of AMPK was further studied during induction of capacitation and acrosome reaction. <b><i>Results:</i></b> We found that AMPKα was localized in the entire acrosomal region, the midpiece and the flagellum, while the phospho-Thr172-AMPK was distributed in the head, the midpiece and flagellum. Activation of AMPK by AICAR and metformin significantly improved sperm motility, membrane integrity and acrosome reaction, largely maintained sperm mitochondrial membrane potentials, lactate content and ATP content, and enhanced the activity of AMPK, PK and LDH, whereas inhibition by Compound C triggered the converse effects. Moreover, PK was localized in the acrosomal area and the midpiece, while LDH was distributed in the tail. Induction of capacitation and acrosome reaction led to AMPK phosphorylation. AMPK phosphorylation regulated the activity of energetic enzymes. <b><i>Conclusion:</i></b> This study for the first time provides evidence that AMPK governs goat sperm functions through energy metabolism <i>in vitro</i>. This finding will help to improve assisted reproductive techniques in goats and the other species.