cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.b65tar
title: Occurrence Download

description: A dataset containing 1860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koeleria cenisia Reut. ex E.Rev.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1860 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004627-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrkwph
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pitcairnia tabuliformis Linden"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008434-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksaebf
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Castanopsis delavayi Franch."
 ]
}

 The dataset includes 484 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005571-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6tghs
title: Occurrence Download

description: A dataset containing 445 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 {
 "and" : [
 "Year 1950-2024",
 "GadmGid is one of (USA.5.9_1, USA.5.31_1, USA.29.16_1, USA.29.4_1, USA.29.1_1)",
 "TaxonKey is one of (Danaus plexippus (Linnaeus, 1758))"
 ]
 }
 ]
}

 The dataset includes 445 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004650-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42oh44
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equus asinus Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 709 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008435-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8tv5j
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-107.48474 29.14673,-105.81482 29.14673,-105.81482 30.27832,-107.48474 30.27832,-107.48474 29.14673))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254744-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0oywhm
title: Occurrence Download

description: A dataset containing 35489 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MEXU/Colección de Plantas Acuáticas"
 ]
}

 The dataset includes 35489 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008435-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.958f56
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fabricinuda limnicola (Hartman, 1951)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051875-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzf3k2
title: Occurrence Download

description: A dataset containing 3222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Libidibia ferrea (Mart. ex Tul.) L.P.Queiroz"
 ]
}

 The dataset includes 3222 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301490-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dupe5s
title: Occurrence Download

description: A dataset containing 637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pilosella saussureoides Arv.-Touv.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 637 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004602-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7e1po
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melanargia arge Sulzer, 1776"
 ]
}

 The dataset includes 60 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008435-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmdzt5
title: Occurrence Download

description: A dataset containing 1685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rusavskia elegans (Link) S.Y.Kondr. & Kärnefelt",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1685 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002045-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqjjaj
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Laelia autumnalis (Lex.) Lindl."
 ]
}

 The dataset includes 191 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008435-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syxjbn
title: Occurrence Download

description: A dataset containing 439 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geniostoma densiflorum Baill."
 ]
}

 The dataset includes 439 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001743-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zasg8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum ravetianum Sambin, Chiron & Essers"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160792-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwa28y
title: Occurrence Download

description: A dataset containing 3802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "OccurrenceStatus is Present",
 "TaxonKey is Afzelia africana Sm. ex Pers.",
 "Year 1950-2021"
 ]
}

 The dataset includes 3802 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038118-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6s9xv
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pitcairnia aureobrunnea Rauh"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008435-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxnad5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrina sierra G.L.Nesom"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160791-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6btjyh
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia raphanorrhiza (Millsp.) J.F.Macbr."
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160793-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zr4h8j
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salicornia procumbens Sm.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 125 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002061-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3eatwa
title: Occurrence Download

description: A dataset containing 1343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "TaxonKey is Senecio lividus L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1343 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008435-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sm6j4
title: Occurrence Download

description: A dataset containing 906 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mylocheilus caurinus (Richardson, 1836)"
 ]
}

 The dataset includes 906 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160795-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2fusa
title: Occurrence Download

description: A dataset containing 344 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neja filiformis (Spreng.) Nees"
 ]
}

 The dataset includes 344 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002040-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qamhwa
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Knautia ×norica Ehrend.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 105 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004604-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57chdj
title: Occurrence Download

description: A dataset containing 90 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Macaca thibetana (A.Milne-Edwards, 1870))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China)",
 "Geometry POLYGON((73 4,135 4,135 53,73 53,73 4))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 90 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160794-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jnizf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynomops Thomas, 1920",
 "Country is Ecuador"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008436-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pp5vr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pilosella pannoniciformis (Litv. & Zahn) Soják",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004635-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3akt9f
title: Occurrence Download

description: A dataset containing 862 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aponogeton distachyos L.f.",
 "Year 1950-2021"
 ]
}

 The dataset includes 862 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301491-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buadk1
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pitcairnia yaupi-bajaensis Rauh"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008436-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cdpag3
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koeleria brevis Steven",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 493 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004625-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j926g8
title: Occurrence Download

description: A dataset containing 446255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 446255 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282100-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqwxuz
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia lithosperma Barrie"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160796-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykofhs
title: Occurrence Download

description: A dataset containing 944 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vitis vinifera subsp. sylvestris (Willd.) Hegi"
 ]
}

 The dataset includes 944 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008436-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tb55j
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum dixiorum Hágsater"
 ]
}

 The dataset includes 59 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160797-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rgpmd
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acrosternum heegeri Fieber, 1861"
 ]
}

 The dataset includes 392 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301493-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cyt4e
title: Occurrence Download

description: A dataset containing 7568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koeleria glauca (Spreng.) DC.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7568 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004636-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9ezrg
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tyrannochromis macrostoma)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 77 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024312-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8spft
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus blitum",
 "Country is Singapore",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024314-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kz7pb9
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Licania cabrerae"
 ]
}

 The dataset includes 68 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024313-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2rtjm
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus blitum",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 429 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024315-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16971797
title: Complete Raw and Processed REyes Dataset: Autonomous MicroED Collection for (S,S)-Salen Ligand

description: Example of autonomous data collection using REyes. Data was acquired on a Talos Arctica microscope with CETA-D camera from (S,S)-salen ligand. The archives contain all components necessary to reproduce published results.

Raw Data - salen_arctica_ceta-d.zip:

Data as is, collected using SerialEM with REyes scipts:



Grid montage

Diffraction mapping data

Continuous rotation microED movies

SerialEM log files


Processed Data - salen_arctica_ceta-d-processed.zip:

Data as is, collected using SerialEM with REyes scipts, all the output data generated by pyREyes, and data processing results by AutoProcess and AutoSolve:



All raw data

REyes grid square search results (original as in the paper and with latest pyREyes package)

REyes eucentricity correction results

REyes diffraction quality evaluation

Final ranked target lists

AutoProcess indexing results for all movies

SHELX phasing results as obtained by AutoSolve

microscope_configs.json file

EXECUTE_COMMAND.txt


Important Note: All data has been re-processed using the current version of pyREyes. To ensure identical results, the original 0-0_grid_squares.py and its output are also provided. The grid square selection represents the only difference from the original processing.

This dataset serves as a complete working example. The same data as well as additional raw data reported in the paper are mirrored at https://miledd.caltech.edu/shared/.