cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3cs85wd3gb.3
title: Dataset on Woody Aboveground Biomass, Disturbance Losses, and Wood Density from an African Savanna Ecosystem

description: This dataset comprises raw and processed data from two tree inventories in savanna and savanna woodland vegetation along elephant disturbance gradients in Zambezi Region, Namibia. The recorded individuals represent all age classes and damage levels (including gullivers) and were classified accordingly into nine growth classes. The raw data contains allometric/dendrometric proxies (height, canopy diameters, and (where applicable) stem circumferences for stems > 15cm at the base) which were recorded for n = 6,179 woody individuals in 60 plots (each 0.1 ha). Wood samples were taken to measure specific wood density (SWD) for each recorded species. 

SWD measurements and raw data have been used to estimate aboveground biomass (AGB) per individual via allometric models. Existing methodologies and workflows had to be improved to account for damages and diverse vegetation structure as shaped by disturbance impacts. In addition to standing biomass, our proposed method also delivered data on biomass losses to respective disturbance agents (elephants, fire, and others) for each individual.

The processed data comprises estimates of living AGB on individual and unit per area basis as determined with our proposed methodology, see:
Kindermann L, Dobler M, Niedeggen D, Linstädter A (2022). A new protocol for estimation of woody aboveground biomass in disturbance-prone ecosystems. Ecol. Indic. 135, 108466, https://doi.org/10.1016/j.ecolind.2021.108466.
Our proposed approach further delivered data on pre-disturbance AGB and AGB losses to major disturbance agents. For a description of biomass partitions also see detailed legend within the Data file.

Our research hypothesis was that increasing elephant densities decrease woody aboveground biomass (AGB) and increase elephant-mediated AGB losses along the disturbance gradient. Findings from the data presented here support this hypothesis. Furthermore, increasing elephant densities seem to decrease fire disturbance impacts along the same gradient. These trends can be demonstrated for two different vegetation types (savanna & savanna woodland). A comparison between the conventional standard method and our improved proposed methodology highlights the importance of suitable sampling strategies and protocols for determining biomass and carbon storage in highly disturbed dryland ecosystems. The conventional method over-estimated biomass in large but disturbed trees, while simultaneously under-estimating total biomass on a unit per area basis through omission of all smaller trees, shrubs, and highly damaged woody individuals (gullivers); see Kindermann L, Dobler M, Niedeggen D, Linstädter A (2022). A new protocol for estimation of woody aboveground biomass in disturbance-prone ecosystems. Ecol. Indic. 135, 108466, https://doi.org/10.1016/j.ecolind.2021.108466.
DOI: 10.17632/2498rt95jy.2
title: The  dataset of Extreme Precipitation Features (EPFs) over the Pearl River Delta in South China during the 2016-2017 warm seasons (April-September)

description: This dataset is used to make figures for the paper entitled "Convective and Microphysical Characteristics of Extreme Precipitation Revealed by Multisource Observations over the Pearl River Delta at Monsoon Coast" submitted to Geophysical Research Letters in November 2021. It contains a total of 10 files, providing the basic information of the EPFs, the dual-polarimetric radar measurements, the lightning pulse discharge events, as well as the 2DVD measurements used in fitting the Z_dp-Z_H^rain relationship.
DOI: 10.17632/8vjrkcs976.2
title: Data on the conditions of disrupted and natural ecosystems of Western Siberia in the areas of oil extraction.

description: Extraction of carbohydrates (including oil), which is crucial for modern civilization, is accompanied with significant negative impact on the biosphere and the planet as a whole, although negative activities associated with carbohydrate extraction are not unavoidable. Currently, oil and oil products are the highest priority pollutants of the environment. Certain territories of oil extraction are matched to the regions of ecological catastrophes. The solutions to ecological problems are complicated by insufficient research of geochemical processes occurring at the transformed natural complexes. Western Siberia is a region of the largest and most intensive oil extraction in Russia. Currently, around 70% of Russian raw hydrocarbon is extracted within Western Siberian lowlands. Presented data was collected during a largescale ecological monitoring of bog ecosystems of Western Siberia in 2007-2009 with a purpose of evaluation and documentation of conditions of disturbed natural complexes in comparison with undisturbed complexes. The main sources of impact on these territories are cluster pads and pipelines. Monitoring sites were located in the areas of oil and highly mineralized water spills and in the areas of exposed to emission flows from cluster pads. The team used GPS to record locations of monitoring sites, described and documented soil incisions as well as documented geobotanical descriptions. Chemo-analytical analysis was carried out for following indicators: pH (water extract), total solids (%, mg/kg), SOM (%), Cl- (mg/kg), Na+ (mg/kg), hydrolytic acidity (mmol / 100g), CEC, % (Al3+, Н+, Na+, Ca-, Mg-), CEC (mmol / 100g), total nitrogen (%), hydrocarbons (g/kg), Ba (mg/kg), V (mg/kg), Fe (mg/kg), Mn (mg/kg), Ni (mg/kg) Zn (mg/kg), SAC (mg-eq/100g). The data can be used by ecologists, pedologists and geobotanists for analysis of the processes of technogenic transformation of forest and taiga bog ecosystems.
DOI: 10.17632/c2gccnfkgd.2
title: An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves

description: The data and the codes available here are used in the publication: "An explicit model to extract viscoelastic properties of cells from AFM force-indentation curves"
DOI: 10.17632/3sczrvrwym.2
title: Data and scripts for RDF recognition of nanoparticles architecture

description: 
The  ultimate sensitivity of pair radial distribution functions (RDF) of atoms to the nanoparticle architecture.

Each Jupiter notebook is presented in two formats: interactive with extension `ipynb` and static, with extension `html`.

Files included:

1. XAFS folder contanins X-ray absorption spectra (*.norm files) and extracted from them EXAFS oscillation functions (*.chi files) for the samples. Also added examples Larch script (*.lar) for fitting of the EXAFS data for sample PtCu_stage2 and example Bash script (*.sh) to produce a set of feff dat files.

1. `produce_rdfs.py` -- Python script to construct nanoparticle models and calculate RDFs for them. Requires ASE [https://wiki.fysik.dtu.dk/ase/ase] and bimetall [https://github.com/lavakyan/ase-bimetall] libraries.

1. `bimetall.tgz` -- bimetall library, requred for running of `produce_rdfs.py` script.

1. `rdfs.tgz` -- archive containing the RDFs obtained after run of `produce_rdfs.py` script.

1. `postproc_RDFs.ipynb` -- Jupyter notebook for loading, scaling and production of `*.pkl` data files.

1. `analyze_R1.ipynb` -- Jupyter notebook for analyzis of metal-metal interatomic distances. Gaussian fitting of RDFs. Classification using ML methods. Prediction of architectures for the samples.

1. `classify_RDFs.ipynb` -- Jupyter notebook for analysis of theoretical RDFs on a range 2 < R < 5 (three coordination shells) and predictions of nanoparticle architectures.

1. `classify_RDFs.ipynb` -- Jupyter notebook for analysis of theoretical RDFs on a range 2.2 < R < 3.2 (first coordination shell) and predictions of nanoparticle architectures.
DOI: 10.17632/gj2p86tp9v.2
title: Saluki BNP

description: BNP concentrations for healthy Saluki's using second generation ELISA
DOI: 10.17632/6td5jtmwrn.1
title: Data for: Bulk synthesis of stoichiometric/meteoritic troilite (FeS) by high-temperature pyrite decomposition and pyrrhotite melting

description: We provide X-ray diffraction raw data and selected SEM-BSE images with qualitative spectral analyses for the paper:
Moreau J., Jõeleht A, Aruväli J., Heikkilä M. J., Stojic A. N., Thomberg T., Plado J., and Hietala S. (2021-2022) Bulk synthesis of stoichiometric/meteoritic troilite (FeS) by high temperature pyrite decomposition and pyrrhotite melting. Meteoritics and Planetary Sciences, accepted.
DOI: 10.13012/b2idb-5649852_v2
title: Global News Index and Extracted Features Repository (v.1.0.1)

description: The Cline Center Global News Index is a searchable database of textual features extracted from millions of news stories, specifically designed to provide comprehensive coverage of events around the world. In addition to searching documents for keywords, users can query metadata and features such as named entities extracted using Natural Language Processing (NLP) methods and variables that measure sentiment and emotional valence. Archer is a web application purpose-built by the Cline Center to enable researchers to access data from the Global News Index. Archer provides a user-friendly interface for querying the Global News Index (with the back-end indexing still handled by Solr). By default, queries are built using icons and drop-down menus. More technically-savvy users can use Lucene/Solr query syntax via a ‘raw query’ option. Archer allows users to save and iterate on their queries, and to visualize faceted query results, which can be helpful for users as they refine their queries. <b>Additional Resources:</b> - Access to Archer and the Global News Index is limited to account-holders. If you are interested in signing up for an account, you can fill out the <b>Archer User Information Form</b>. - Current users who would like to provide feedback, such as reporting a bug or requesting a feature, can fill out the <b>Archer User Feedback Form</b>. - The Cline Center sends out periodic email newsletters to the Archer Users Group. Please fill out this form to <b>subscribe to Archer Users Group</b>. <b>Citation Guidelines:</b> 1) To cite the GNI codebook (or any other documentation associated with the Global News Index and Archer) please use the following citation: Cline Center for Advanced Social Research. 2020. Global News Index and Extracted Features Repository [codebook], v1.0.1. Champaign, IL: University of Illinois. Dec. 16. doi:10.13012/B2IDB-5649852_V2 2) To cite data from the Global News Index (accessed via Archer or otherwise) please use the following citation (filling in the correct date of access): Cline Center for Advanced Social Research. 2020. Global News Index and Extracted Features Repository [database], v1.0.1. Champaign, IL: University of Illinois. Dec. 16. Accessed Month, DD, YYYY. doi:10.13012/B2IDB-5649852_V2
DOI: 10.6084/m9.figshare.16831492
title: PR-SZZ Data Set and Evaluation

description: This archive was created along the work described in detail in "PR-SZZ: How pull requests can support the tracing of defects in software repositories" submitted to SANER 2022. It contains all data sets created and used in the study. Additionally, we include code to evaluate our results.
DOI: 10.5281/zenodo.5838305
title: Supplementary dataset and tables for "Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale"

description: <strong>Supplementary dataset and tables for "Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale"</strong> <strong>Supplementary Dataset and Tables</strong> listing identified acetone biosynthesis genes from mining of the DJ collection and gene and part sequences used for combinatorial library and cell-free prototyping (<strong>Supplementary Tab. 1</strong>), combinatorial library combinations and results (<strong>Supplementary Tab. 2</strong>), gene KO predictions (<strong>Supplementary Tab. 3</strong>), cell-free prototyping combinations and results (<strong>Supplementary Tab. 4</strong>), proteomics results for wild-type strain plus acetone biosynthesis plasmid (<strong>Supplementary Tab. 5</strong>), proteomics results for strain Δ<em>0553</em> plus select combinatorial library plasmids (<strong>Supplementary Tab. 6</strong>), Genbank accession numbers for 272 genomes (<strong>Supplementary Tab. 7</strong>). sequences of oligonucleotides (<strong>Supplementary Tab. 8</strong>) and emission factors used to calculate the GHG emissions of acetone (<strong>Supplementary Tab. 9</strong>) and IPA (<strong>Supplementary Tab. 10</strong>) in LCA.
DOI: 10.5281/zenodo.5838304
title: Supplementary dataset and tables for "Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale"

description: <strong>Supplementary dataset and tables for "Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale"</strong> <strong>Supplementary Dataset and Tables</strong> listing identified acetone biosynthesis genes from mining of the DJ collection and gene and part sequences used for combinatorial library and cell-free prototyping (<strong>Supplementary Tab. 1</strong>), combinatorial library combinations and results (<strong>Supplementary Tab. 2</strong>), gene KO predictions (<strong>Supplementary Tab. 3</strong>), cell-free prototyping combinations and results (<strong>Supplementary Tab. 4</strong>), proteomics results for wild-type strain plus acetone biosynthesis plasmid (<strong>Supplementary Tab. 5</strong>), proteomics results for strain Δ<em>0553</em> plus select combinatorial library plasmids (<strong>Supplementary Tab. 6</strong>), Genbank accession numbers for 272 genomes (<strong>Supplementary Tab. 7</strong>). sequences of oligonucleotides (<strong>Supplementary Tab. 8</strong>) and emission factors used to calculate the GHG emissions of acetone (<strong>Supplementary Tab. 9</strong>) and IPA (<strong>Supplementary Tab. 10</strong>) in LCA.
DOI: 10.5281/zenodo.5838237
title: Laser-equipped gas reaction chamber for probing environmentally sensitive materials at near atomic scale

description: Five atom probe datasets as featured in the PLOSone journal concerning the methodology of laser-assisted thermochemical gas treatments of atom probe needles, two comparing the deuterium charged and uncharged states of a steel and comparing various early states of direct hydrogen reduction of FeO.
description: Each file is stored in the EPOS format as described in: Gault, B., Moody, M. P., Cairney, J. M. & Ringer, S. P. Atom Probe Microscopy, 1 edition (Springer, New York, 2012).
DOI: 10.5281/zenodo.5838236
title: Laser-equipped gas reaction chamber for probing environmentally sensitive materials at near atomic scale

description: Five atom probe datasets as featured in the PLOSone journal concerning the methodology of laser-assisted thermochemical gas treatments of atom probe needles, two comparing the deuterium charged and uncharged states of a steel and comparing various early states of direct hydrogen reduction of FeO.
description: Each file is stored in the EPOS format as described in: Gault, B., Moody, M. P., Cairney, J. M. & Ringer, S. P. Atom Probe Microscopy, 1 edition (Springer, New York, 2012).
DOI: 10.6084/m9.figshare.18165407
title: Vancomycin-Resistant Enterococcus faecium; Should we screen on admission.pdf

description: Data on testresults, gender and time from admission.
DOI: 10.6084/m9.figshare.18165407.v1
title: Vancomycin-Resistant Enterococcus faecium; Should we screen on admission.pdf

description: Data on testresults, gender and time from admission.
DOI: 10.25810/5dxz-xm93.45
title: Latin American Newspaper Coverage of Climate Change or Global Warming, 2005-2021 - December 2021

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5255/ukda-sn-855385
title: Effects of Mental Representations of Children on Prosocial Motivation, 2017-2021

description: This research project examines adult mental representations of children and their implications for prosocial motivation in adults. The original proposal contained six experiments testing when and how the salience of children elicits prosocial motivation in adults. As the project evolved, and later as the Covid-19 pandemic emerged, we included design alterations to better address some of the key research questions, creating a greater number of studies that could programmatically replicate key findings and address follow-up questions that the findings raised. By its completion, our project included three broad collections of studies. The largest comprising 19 studies examined effects of child salience on prosocial motivation, the mechanisms underpinning this effect, and generalizability across outcomes and contexts. Following the original proposal, 10 of these studies were experiments that used different means to make children salient (e.g., descriptions, videos) on prosocial motivation. Across these studies, we found support for our hypothesis that the salience of children increases pro-social motivation and behaviour in adults. An additional 4 studies examined the effects of making children salient in appeals to help the environment, 4 examined the effects of child salience on the mental accessibility of prosocial values and attitudes, and one examined the effects of child salience on empathy. A second set of 14 studies developed and refined a set of scales measuring attitudes toward children (including adolescents in the early studies) and examined associations between two novel dimensions of these attitudes (affection and stress) and a range of measures assessing personality dimensions and prosocial and punitive beliefs regarding children. These studies included explorations of the role of attitudes toward children in prejudice, using face perception designs. A third set of 4 studies began to refine and examine our set of scales measuring attitudes toward teenagers and examined associations between three novel dimensions of these attitudes (ambivalence, negativity, positivity) and measures assessing personality dimensions and beliefs regarding adolescents and young people (e.g., compliance with Covid restrictions)
DOI: 10.25345/c5hg5w
title: MassIVE MSV000088672 - GNPS- Bacterial Lipidomics- AMPs stressing
title: Bligh and Dyer lipid extraction of Listeria monocytogenes cells previously stressed by the cultivation with nisin and CLPs in sublethal concentrations.
DOI: 10.5286/isis.e.rb2090007-1
title: hybrid organic-inorganic double perovskites MA2TeX6 X=Cl
DOI: 10.5286/isis.e.rb2090008-1
title: Duplicate Of: hybrid organic-inorganic double perovskites MA2TeX6 X=Br
DOI: 10.5286/isis.e.rb2090009-1
title: Duplicate Of: Duplicate Of: hybrid organic-inorganic double perovskites MA2TeX6 X=I
DOI: 10.5519/qd.fqitvmaw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2902 records)
DOI: 10.6084/m9.figshare.18166574
title: Ghost resonant signals in the LAI coupling

description: Data format description The data files are the hdf5 format. For the atmospheric pressure, TEC and Seismic data at the LESH station during 1 August -15 September 2021 You can find the data in the file named by “LESH_20210801-20210915.h5”. The data recorded on different days can be retrieved from the path. For example: You can retrieve seismic data recorded on 1 August 2021 through the path /0801/seismic_data The first column is the LT time (unit: seconds) from 00:00:00 on the day. The second column is seismic velocity data (unit: count) at the Z component. You can retrieve TEC data from the BDS geostationary 3 (G3) satellite on 1 August 2021 through the path /0801/TEC_data_G3 The first column is the LT time (unit: seconds) from 00:00:00 on the day. The second column is TEC data (unit: TECU). You can retrieve atmospheric pressure data on 1 August 2021 through the path /0801/Barometer_data The first column is the LT time (unit: seconds) from 00:00:00 on the day. The second column is atmospheric pressure data (unit: hPa). For the TEC data retrieved at the YADU station during 1 August -15 September 2021 You can find the data in the file named by “YADU_20210801-20210915.h5”. You can retrieve TEC data from the BDS geostationary 3 (G3) satellite on 1 August 2021 through the path /0801/TEC_data_G3 The first column is the LT time (unit: seconds) from 00:00:00 on the day. The second column is TEC data (unit: TECU).
DOI: 10.5066/p9jjhbvw
title: Storm event data in the control and test catchments during the calibration and treatment phase of a urban tree canopy study in Fond du Lac, Wisconsin, from May 2018 through September 2020: U.S. Geological Survey data release

description: These data were collected as part of a study to assess the stormwater volume reduction capabilities of urban street trees. In this paired-catchment study rainfall-runoff relations were developed in a medium-density residential area before and after half of the street trees were removed from the treatment basin. The Supplementary_Event_Data set contains rainfall depth and intensity, event date and duration, and paired runoff volume and peak discharge for 135 rainfall events that ocurred between May and September 2018-2020. Unit value discharge and rainfall data used to develop the Supplementary_Event_Data are also published in this data release.
DOI: 10.6084/m9.figshare.16732516
title: Evolution of two-component quorum sensing systems

description: Supplementary data for Evolution of two-component quorum sensing systems as published in <i>Access Microbiology</i><br>
DOI: 10.6084/m9.figshare.16732516.v1
title: Evolution of two-component quorum sensing systems

description: Supplementary data for Evolution of two-component quorum sensing systems as published in <i>Access Microbiology</i><br>
DOI: 10.5281/zenodo.5837571
title: Data for the article entitled "ENVIRONMENTAL AND SOCIAL CORRELATES, AND ENERGETIC CONSEQUENCES OF FITNESS MAXIMISATION ON DIFFERENT MIGRATORY BEHAVIOURS IN A LONG-LIVED SCAVENGER"

description: Data used in the statistical analyses of the article entitled "ENVIRONMENTAL AND SOCIAL CORRELATES, AND ENERGETIC CONSEQUENCES OF FITNESS MAXIMISATION ON DIFFERENT MIGRATORY BEHAVIOURS IN A LONG-LIVED SCAVENGER"
DOI: 10.5281/zenodo.5837570
title: Data for the article entitled "ENVIRONMENTAL AND SOCIAL CORRELATES, AND ENERGETIC CONSEQUENCES OF FITNESS MAXIMISATION ON DIFFERENT MIGRATORY BEHAVIOURS IN A LONG-LIVED SCAVENGER"

description: Data used in the statistical analyses of the article entitled "ENVIRONMENTAL AND SOCIAL CORRELATES, AND ENERGETIC CONSEQUENCES OF FITNESS MAXIMISATION ON DIFFERENT MIGRATORY BEHAVIOURS IN A LONG-LIVED SCAVENGER"
DOI: 10.25919/2k7x-1n42
title: Parkes observations for project PX500 semester 2021OCTS_19

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.