cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6085/aa/ybhx00_xxxitv2xmmr02_20180419.50.1
title: PISCO: Intertidal: mussel growth temperature data: Yachats Beach, Oregon, USA (YBHX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Yachats Beach, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2018-04-19. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/ybhx00_xxxitv2xmmr03_20170428.40.1
title: (:unkn)
DOI: 10.6085/aa/ybhx00_xxxitv2xmmr03_20170428.50.1
title: PISCO: Intertidal: mussel growth temperature data: Yachats Beach, Oregon, USA (YBHX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Yachats Beach, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2017-04-28. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.6085/aa/ybhx00_xxxitv2xmmr03_20180419.40.1
title: (:unkn)
DOI: 10.6085/aa/ybhx00_xxxitv2xmmr03_20180419.50.1
title: PISCO: Intertidal: mussel growth temperature data: Yachats Beach, Oregon, USA (YBHX00)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Yachats Beach, Oregon, USA by PISCO. Measurements were collected using Onset Tidbit V2 Temp Data Logger (Onset Computer Corp. UTBI-001) beginning 2018-04-19. Site temperature loggers are bolted down in a wire cage at various locations within each site. Mussel growth temperature loggers are bolted down in a wire cage at high, mid, or low positions within a mussel bed. Temperature is recorded at 10.0 minute intervals.
DOI: 10.5517/ccdc.csd.cc1pt3cz
title: CCDC 1573261: Experimental Crystal Structure Determination

description: Related Article: Yuanze Wang, Pravin Patil, Katarzyna Kurpiewska, Justyna Kalinowska-Tluscik, Alexander Dömling|2019|Org.Lett.|21|3533|doi:10.1021/acs.orglett.9b00778
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.2653924
title: Dataset of Reducing the Effort for Systematic Reviews in Software Engineering

description: Reducing the Effort for Systematic Reviews in Software Engineering

<strong>Background.</strong> Systematic Reviews (SRs) are means to collect and synthesize evidence from the identification, analysis and interpretation of multiple sources, or primary studies. To this aim, they use a well-defined methodology that should mitigate the risks of biases and ensure repeatability for later updates. SRs, however, involve significant effort.

<strong>Goal.</strong> The goal of this paper is to introduce a new methodology that, among other benefits, while taking advantage of the value provided by human expertise, reduces the amount of manual tedious tasks involved in SRs.

<strong>Method.</strong> Starting from current methodologies for SRs, we replaced the steps of keywording and data extraction with an automatic methodology for generating a domain ontology and classifying the primary studies. This methodology has been then applied in the software engineering sub-area of software architecture, and software quality, and evaluated with human annotators.

<strong>Results.</strong> The result is a novel expert-driven automatic methodology for performing SRs. This combines ontology-learning techniques and semantic technologies with the human-in-the-loop. The first (thanks to automation) fosters scalability, objectivity, reproducibility and granularity of the studies; the second allows tailoring to the specific focus of the study at hand, as well as knowledge reuse from domain experts.

<strong>Conclusions.</strong> Thanks to automation of the less creative steps in SRs, our methodology allows researchers to skip the tedious tasks of keywording and manually classifying primary studies, thus freeing effort for the analysis and the discussion.
DOI: 10.5281/zenodo.2653925
title: Dataset of Reducing the Effort for Systematic Reviews in Software Engineering

description: Reducing the Effort for Systematic Reviews in Software Engineering

<strong>Background.</strong> Systematic Reviews (SRs) are means to collect and synthesize evidence from the identification, analysis and interpretation of multiple sources, or primary studies. To this aim, they use a well-defined methodology that should mitigate the risks of biases and ensure repeatability for later updates. SRs, however, involve significant effort.

<strong>Goal.</strong> The goal of this paper is to introduce a new methodology that, among other benefits, while taking advantage of the value provided by human expertise, reduces the amount of manual tedious tasks involved in SRs.

<strong>Method.</strong> Starting from current methodologies for SRs, we replaced the steps of keywording and data extraction with an automatic methodology for generating a domain ontology and classifying the primary studies. This methodology has been then applied in the software engineering sub-area of software architecture, and software quality, and evaluated with human annotators.

<strong>Results.</strong> The result is a novel expert-driven automatic methodology for performing SRs. This combines ontology-learning techniques and semantic technologies with the human-in-the-loop. The first (thanks to automation) fosters scalability, objectivity, reproducibility and granularity of the studies; the second allows tailoring to the specific focus of the study at hand, as well as knowledge reuse from domain experts.

<strong>Conclusions.</strong> Thanks to automation of the less creative steps in SRs, our methodology allows researchers to skip the tedious tasks of keywording and manually classifying primary studies, thus freeing effort for the analysis and the discussion.
DOI: 10.17632/rgvwcz3g9r.1
title: Data for: Does the group membership shape evaluations on other drivers? The role of symbolic cues in traffic
DOI: 10.5519/qd.xfrkhitb
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (420 records)
DOI: 10.17632/p388s8jfjv.1
title: Data for: Pavlik Harness Initiation on Barlow Positive Hips: Can We Wait?

description: DDH Baseline and Outcome Data
DOI: 10.5281/zenodo.2654300
title: Prosopographical Database of Yahudu and Its Surroundings

description: This is a prosopographical database of people attested in the village of Yahudu and its surroundings in the Babylonian countryside. It relates to chapter 4 in Tero Alstola (2020), <em>Judeans in Babylonia: A Study of Deportees in the Sixth and Fifth Centuries BCE</em> (Culture and History of the Ancient Near East 109. Leiden: Brill). For further information, see the readme files.
description: This research has been financially supported by the ERC Starting Grant project "By the Rivers of Babylon: New Perspectives on Second Temple Judaism from Cuneiform Texts" and by two projects funded by the Academy of Finland, the Centre of Excellence in Changes in Sacred Texts and Traditions and the Centre of Excellence in Ancient Near Eastern Empires.
DOI: 10.5281/zenodo.2654301
title: Prosopographical Database of Yahudu and Its Surroundings

description: This is a prosopographical database of people attested in the village of Yahudu and its surroundings in the Babylonian countryside. It relates to Chapter 4 in Tero Alstola, <em>Judeans in Babylonia: A Study of Deportees in the Sixth and Fifth Centuries BCE</em>. Culture and History of the Ancient Near East. Leiden: Brill. For further information, see the readme file.
description: This research has been financially supported by the ERC Starting Grant project "By the Rivers of Babylon: New Perspectives on Second Temple Judaism from Cuneiform Texts" and by two projects funded by the Academy of Finland, the Centre of Excellence in Changes in Sacred Texts and Traditions and the Centre of Excellence in Ancient Near Eastern Empires.
DOI: 10.5286/isis.e.rb1910465
title: Influence of cation ordering and Li content on solid solution behavior in LiNi0.5Mn1.5O4

description: For energy storage applications, high energy density is an important material characteristic when searching for new types of suitable materials. LiNi0.5Mn1.5O4 (LNMO) is an interesting material with an energy density of around four times that of one of the most commercialized materials in Li-ion batteries, LiCoO2. This experiment aims to investigate any structure related limitations to delivering the full capacity of the material as these limitations are not fully understood yet. This is important for optimizing the electrochemical performance of LNMO as an energy storage material.
DOI: 10.5286/isis.e.rb1910465-1
title: Influence of cation ordering and Li content on solid solution behavior in LiNi0.5Mn1.5O4

description: For energy storage applications, high energy density is an important material characteristic when searching for new types of suitable materials. LiNi0.5Mn1.5O4 (LNMO) is an interesting material with an energy density of around four times that of one of the most commercialized materials in Li-ion batteries, LiCoO2. This experiment aims to investigate any structure related limitations to delivering the full capacity of the material as these limitations are not fully understood yet. This is important for optimizing the electrochemical performance of LNMO as an energy storage material.
DOI: 10.5517/ccdc.csd.cc21j884
title: CCDC 1892465: Experimental Crystal Structure Determination

description: Related Article: Lili Yang, Jian Zhou, Hua-Hong Zou, Qiuling Tang|2019|RSC Advances|9|13082|doi:10.1039/C9RA01327J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21j895
title: CCDC 1892466: Experimental Crystal Structure Determination

description: Related Article: Lili Yang, Jian Zhou, Hua-Hong Zou, Qiuling Tang|2019|RSC Advances|9|13082|doi:10.1039/C9RA01327J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21k560
title: CCDC 1893331: Experimental Crystal Structure Determination

description: Related Article: Marco Saccone, Steffen Riebe, Jacqueline Stelzer, Christoph Wölper, Constantin G. Daniliuc, Jens Voskuhl, Michael Giese|2019|CrystEngComm|21|3097|doi:10.1039/C9CE00444K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21lsv9
title: CCDC 1894901: Experimental Crystal Structure Determination

description: Related Article: Marco Saccone, Steffen Riebe, Jacqueline Stelzer, Christoph Wölper, Constantin G. Daniliuc, Jens Voskuhl, Michael Giese|2019|CrystEngComm|21|3097|doi:10.1039/C9CE00444K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21m8ml
title: CCDC 1895359: Experimental Crystal Structure Determination

description: Related Article: Marco Saccone, Steffen Riebe, Jacqueline Stelzer, Christoph Wölper, Constantin G. Daniliuc, Jens Voskuhl, Michael Giese|2019|CrystEngComm|21|3097|doi:10.1039/C9CE00444K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21m8nm
title: CCDC 1895360: Experimental Crystal Structure Determination

description: Related Article: Marco Saccone, Steffen Riebe, Jacqueline Stelzer, Christoph Wölper, Constantin G. Daniliuc, Jens Voskuhl, Michael Giese|2019|CrystEngComm|21|3097|doi:10.1039/C9CE00444K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc216psr
title: CCDC 1883274: Experimental Crystal Structure Determination

description: Related Article: Hiroto Hori, Shigeru Arai, Atsushi Nishida|2019|Org.Biomol.Chem.|17|4783|doi:10.1039/C9OB00637K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21mbqr
title: CCDC 1895424: Experimental Crystal Structure Determination

description: Related Article: Marco Saccone, Steffen Riebe, Jacqueline Stelzer, Christoph Wölper, Constantin G. Daniliuc, Jens Voskuhl, Michael Giese|2019|CrystEngComm|21|3097|doi:10.1039/C9CE00444K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21nrs8
title: CCDC 1896790: Experimental Crystal Structure Determination

description: Related Article: Hiroto Hori, Shigeru Arai, Atsushi Nishida|2019|Org.Biomol.Chem.|17|4783|doi:10.1039/C9OB00637K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21nrwc
title: CCDC 1896793: Experimental Crystal Structure Determination

description: Related Article: Hiroto Hori, Shigeru Arai, Atsushi Nishida|2019|Org.Biomol.Chem.|17|4783|doi:10.1039/C9OB00637K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21ny4t
title: CCDC 1896956: Experimental Crystal Structure Determination

description: Related Article: Hiroto Hori, Shigeru Arai, Atsushi Nishida|2019|Org.Biomol.Chem.|17|4783|doi:10.1039/C9OB00637K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21ny5v
title: CCDC 1896957: Experimental Crystal Structure Determination

description: Related Article: Hiroto Hori, Shigeru Arai, Atsushi Nishida|2019|Org.Biomol.Chem.|17|4783|doi:10.1039/C9OB00637K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.akmmg4jq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.2633275
title: Metabolic and Stress Response Changes Precede Disease Onset in the Spinal Cord of Mutant SOD1 ALS Mice

description: Many Amyotrophic Lateral Sclerosis (ALS) patients experience hypermetabolism, or an increase in measured versus calculated metabolic rate. The cause of hypermetabolism and the effects on neuronal metabolism in ALS are currently unknown, but the efficacy of dietary interventions shows promise for metabolism as an ALS therapeutic target. The goal of this study is to measure changes in metabolic pathways as a function of disease progression in spinal cords of the SOD1G93A mouse model of ALS. We conducted a comprehensive assessment of protein expression for metabolic pathways, antioxidants, chaperones, and proteases in lumbar spinal cord from male SOD1G93A mice at pre-onset, onset, and end-stages of the disease using targeted proteomic analysis. These results reveal that protein content of metabolic proteins including proteins involved in glycolysis, β‐oxidation, and mitochondrial metabolism is altered in SOD1G93A mouse spinal cord well before disease onset. The changes in mitochondrial metabolism proteins are associated with decreased maximal respiration and glycolytic flux in SOD1G93A dermal fibroblasts and increased hydrogen peroxide and lipid hydroperoxide production in mitochondria from sciatic nerve and gastrocnemius muscle fibers at end stage of disease. Consistent with redox dysregulation, expression of the glutathione antioxidant system is decreased, and peroxiredoxins and catalase expression are increased. In addition, stress response proteases and chaperones, including those involved in the mitochondrial unfolded protein response, are induced before disease onset. In summary, we report that metabolic and stress response changes occur in SOD1G93A lumbar spinal cord before motor symptom onset, and are primarily caused by SOD1G93A expression and do not vary greatly as a function of disease course.
description: These files can be opened using the program Skyline.   The program is free to download at: https://skyline.ms/project/home/software/Skyline/begin.view
The general experimental design was two genotypes (WT and G93A) with three groups of mice within each genotype (preonset, onset, and endstage).  The samples were analyzed by three different targeted protein quantification panels (1antioxidant and glycolysis, 2beta oxidation, and 3krebs cycle).  For each panel, the name is a general description of most, but not all, of the proteins measured in the panel.
DOI: 10.5281/zenodo.2633276
title: Metabolic and Stress Response Changes Precede Disease Onset in the Spinal Cord of Mutant SOD1 ALS Mice

description: Many Amyotrophic Lateral Sclerosis (ALS) patients experience hypermetabolism, or an increase in measured versus calculated metabolic rate. The cause of hypermetabolism and the effects on neuronal metabolism in ALS are currently unknown, but the efficacy of dietary interventions shows promise for metabolism as an ALS therapeutic target. The goal of this study is to measure changes in metabolic pathways as a function of disease progression in spinal cords of the SOD1G93A mouse model of ALS. We conducted a comprehensive assessment of protein expression for metabolic pathways, antioxidants, chaperones, and proteases in lumbar spinal cord from male SOD1G93A mice at pre-onset, onset, and end-stages of the disease using targeted proteomic analysis. These results reveal that protein content of metabolic proteins including proteins involved in glycolysis, β‐oxidation, and mitochondrial metabolism is altered in SOD1G93A mouse spinal cord well before disease onset. The changes in mitochondrial metabolism proteins are associated with decreased maximal respiration and glycolytic flux in SOD1G93A dermal fibroblasts and increased hydrogen peroxide and lipid hydroperoxide production in mitochondria from sciatic nerve and gastrocnemius muscle fibers at end stage of disease. Consistent with redox dysregulation, expression of the glutathione antioxidant system is decreased, and peroxiredoxins and catalase expression are increased. In addition, stress response proteases and chaperones, including those involved in the mitochondrial unfolded protein response, are induced before disease onset. In summary, we report that metabolic and stress response changes occur in SOD1G93A lumbar spinal cord before motor symptom onset, and are primarily caused by SOD1G93A expression and do not vary greatly as a function of disease course.
description: These files can be opened using the program Skyline.   The program is free to download at: https://skyline.ms/project/home/software/Skyline/begin.view
The general experimental design was two genotypes (WT and G93A) with three groups of mice within each genotype (preonset, onset, and endstage).  The samples were analyzed by three different targeted protein quantification panels (1antioxidant and glycolysis, 2beta oxidation, and 3krebs cycle).  For each panel, the name is a general description of most, but not all, of the proteins measured in the panel.
DOI: 10.5281/zenodo.2653243
title: Connectivity networks for Acropora corals on the GBR to investigate split spawning

description: Connectivity networks for Acropora corals on the GBR to investigate split spawning. If using these outputs please cite the article: Hock K, Doropoulos C, Gorton R, Condie SA, Mumby PJ. (2019). <strong>Split spawning increases robustness of coral larval supply and inter-reef connectivity</strong>. Nature Communications <strong>10</strong>, 3463. Link to the paper: https://rdcu.be/bOW1x
description: Link to the paper: https://rdcu.be/bOW1x
DOI: 10.5281/zenodo.2653244
title: Connectivity networks for Acropora corals on the GBR to investigate split spawning

description: Connectivity networks for Acropora corals on the GBR to investigate split spawning. If using these outputs please cite the article: Hock K, Doropoulos C, Gorton R, Condie SA, Mumby PJ. (2019). <strong>Split spawning increases robustness of coral larval supply and inter-reef connectivity</strong>. Nature Communications <strong>10</strong>, 3463. Link to the paper: https://rdcu.be/bOW1x
description: Link to the paper: https://rdcu.be/bOW1x
DOI: 10.5281/zenodo.2653941
title: Supporting code and data for ProvBuild

description: Supporting code and data for ProvBuild