cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v9t5h/7
title: Sample file for merged Illumina and Affymetrix array data (fam)
DOI: 10.5061/dryad.v9t5h/8
title: Identification for individuals included in merged Illumina and Affymetrix data
DOI: 10.5061/dryad.v9t5h/9
title: Mt Marker locations
DOI: 10.5061/dryad.30c8p/10
title: cbc_resid

description: Residual values for Complete Blood Count phenotypes from linear model after correcting for age, sex and spay/neuter status, and body weight covariates.
DOI: 10.5061/dryad.30c8p/11
title: ccp_resid

description: Residual values for Clinical Chemistry Profile phenotypes from linear model after correcting for age, sex and spay/neuter status, and body weight covariates.
DOI: 10.5061/dryad.30c8p/12
title: CCPSickDogs

description: Raw data from Clinical Chemistry Profile of dogs with diagnosed or presumed liver disease/injury.
DOI: 10.5061/dryad.30c8p/13
title: CBCCCPValuesByBreedWithPlinkBasedMAF

description: Select Complete Blood Count and Clinical Chemistry values averaged by dog with breed information, breed name abbreviation, count of dogs per breed from which mean (healthy) ALT value was calculated, mean allele frequency for the SNP most highly associated with ALT activity per breed in our database (see manuscript for further explanation). Data used in Figure 3 of manuscript.
DOI: 10.5061/dryad.30c8p/6
title: ccp_dogs

description: Identification numbers of dogs for which Clinical Chemistry data was included in the study.
DOI: 10.5061/dryad.30c8p/7
title: ccp_genos.bed

description: Bed file used in GWAS for CCP phenotypes.
DOI: 10.5061/dryad.30c8p/8
title: ccp_genos.bim

description: Bim file used in GWAS for CCP phenotypes.
DOI: 10.5061/dryad.30c8p/9
title: ccp_genos.fam

description: Fam file used in GWAS for CCP phenotypes.
DOI: 10.5061/dryad.31733/34
title: RUN4_TAG26
DOI: 10.5061/dryad.31733/35
title: RUN4_TAG-12.bam

description: Dioscorea praehensilis_P603_sample  - chloroplast enrichment library (MiSeq) - .bam file containing reads after mapping on the chloroplast  genome. Only reads properly mapped were used.
DOI: 10.5061/dryad.31733/36
title: RUN4_TAG25

description: Dioscorea praehensilis_P458_sample  - chloroplast enrichment library (MiSeq) - .bam file containing reads after mapping on the chloroplast  genome. Only reads properly mapped were used.
DOI: 10.5061/dryad.31733/38
title: RUN4_TAG30

description: Dioscorea praehensilis_A571_sample - chloroplast enrichment library (MiSeq) - .bam file containing reads after mapping on the chloroplast genome. Only reads properly mapped were used.
DOI: 10.5061/dryad.31733/39
title: RUN3-TAG-55_R2_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/40
title: RUN3-TAG-55_R1_paired
DOI: 10.5061/dryad.31733/41
title: RUN3-TAG-56_R1_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/42
title: RUN3-TAG-56_R2_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.3jv25/1
title: Yee et al PLoS One 2015 life history data

description: Contains data on male and female mass and development times for three species of mosquitoes across different detrital environments
DOI: 10.5061/dryad.564sc/2
title: X1_WT (Fig 4A)
DOI: 10.5061/dryad.564sc/3
title: X1_KO (Fig 4B
DOI: 10.5061/dryad.564sc/4
title: X1_compl (Fig 4C)
DOI: 10.5061/dryad.564sc/5
title: MS and MS2 of PtdThr in T. gondii

description: Negative ion mode MS (ion trap) and MS2 data collected during the elution of PtdThr. (Fig 1B & 1C).
DOI: 10.5061/dryad.564sc/6
title: Base peak chromatogram (Fig1A)

description: Base peak chromatogram (Fig1A) corresponding to the elution profile of lipids isolated from extracellulartachyzoites.
DOI: 10.5061/dryad.564sc/7
title: Ion chromatogram of the separation of phospholipids from human fibroblasts (FigS2A)

description: Ion chromatogram of the separation of phospholipids from human fibroblasts
DOI: 10.5061/dryad.589p0/1
title: Elk group sizes and covariates
DOI: 10.5061/dryad.6354b.2
title: Data from: Clonal relatedness between lobular carcinoma in situ and synchronous malignant lesions
DOI: 10.5061/dryad.6354b.2/1.2
title: KingClonalityCode

description: This file contains the R code used to preprocess the SNP array files (not submitted due to privacy issues) as well as the clonality analysis using the submitted log-ratio data.
DOI: 10.5061/dryad.6f75v/1
title: Definitions of ecological states, coding of terminal groups and references
DOI: 10.5061/dryad.6f75v/2
title: Diet Coding Table

description: Includes dietary coding and tip names linking to Rainford, J. L., M. Hofreiter, D. B. Nicholson, and P. J. Mayhew. 2014. Phylogenetic Distribution of Extant Richness Suggests Metamorphosis Is a Key Innovation Driving Diversification in Insects. PLoS ONE 9:e109085. [Phylogeny used for analysis]
DOI: 10.5061/dryad.80r39/1
title: Individual_A

description: The file contains a series of pressure recordings obtained every two minutes from a data storage tag set on individual A.
DOI: 10.5061/dryad.80r39/2
title: Individual_B

description: the file contains a series of data obtained every two minutes from a data storage tag set on individual B
DOI: 10.5061/dryad.80r39/3
title: Individual_C

description: the file contains a series of pressure recordings obtained every two minutes from a data storage tag set on individual C
DOI: 10.5061/dryad.80r39/4
title: Individual_D

description: the file contains a series of pressure recordings obtained every two minutes from a data storage tag set on individual D
DOI: 10.5061/dryad.8616.2
title: Data from: Historical introgression and the role of selective vs. neutral processes in structuring nuclear genetic variation (AFLP) in a circumpolar marine fish, the capelin (Mallotus villosus)
DOI: 10.5061/dryad.8616.2/1.2
title: colbeck_allsites

description: AFLP datafile for all sites used in phylogeographic analysis
DOI: 10.5061/dryad.8616.2/2.2
title: colbeck_introgression

description: AFLP data file from analysis of between clade introgression
DOI: 10.5061/dryad.8616.2/3.2
title: capelin_274_ind_134_loci
DOI: 10.5061/dryad.d4m07/2
title: 1369hybridprob+structure

description: Global hybrid analysis giving hybrid probabilities and structure ancestry
DOI: 10.5061/dryad.d4m07/3
title: 1295structureresults

description: Structure results used to determine groupings for parameter estimations
DOI: 10.5061/dryad.d4m07/4
title: Zoomin1hybridprob+structure

description: Results of zoom-in hybrid probabilities and structure ancestry for DRC-Uganda region (Box C, Fig 1)
DOI: 10.5061/dryad.d4m07/5
title: Zoomin2hybridprob+structure

description: Results of zoom-in hybrid probabilities and structure ancestry for western portion of Central Africa region (Box D, Fig 1)
DOI: 10.5061/dryad.d4m07/6
title: 1395genotypes_updated

description: Genotypes of all samples used in analyses, along with location codes and sample types
DOI: 10.5061/dryad.d4m07/7
title: regionfile

description: Latitude and longitude for each location code, accompanies genotype file
DOI: 10.5061/dryad.d4m07/8
title: Mondol et al. 2015- Elephant mtDNA data

description: Sequence alignment file with 526 bp mitochondrial partial control region sequences of both forest, savanna and hybrid elephants. This file contains sequences of pure reference African forest and savanna elephants and Asian elephants from Genbank, along with sequences generated through this study from pure (forest and savanna) and hybrid elephants. Total 125 sequences are aligned in this file.
DOI: 10.5061/dryad.g615h/1
title: VazPinto_etal-ScientificReports

description: The data file contains genotypes scored at 51 microsatellites for 57 sable and 24 roan individuals analysed together with the nine hybrids described in this work.
DOI: 10.5061/dryad.gd126/1
title: Wet grassland birds in Sweden
DOI: 10.5061/dryad.h4t15/1
title: Macrofauna for 2008 caging experiment

description: Macrofauna count and proportion data for the 2008 caging experiment
DOI: 10.5061/dryad.h4t15/2
title: Porewater sulfide Summer 2008

description: Sulfide concentrations for porewaters collected during the summer 2008 caging experiment
DOI: 10.5061/dryad.h4t15/3
title: Porewater iron Summer 2008

description: Fe(III) concentrations from porewaters collected during the summer 2008 caging experiment
DOI: 10.5061/dryad.hb5b0.1
title: Data from: Origin of land plants revisited in the light of sequence contamination and missing data
DOI: 10.5061/dryad.hb5b0.2/11.2
title: PhyloBayes-Trees

description: 20 PhyloBayes trees (CATGTR+G) obtained from five different partitions (missing data) with four different taxon samples.
DOI: 10.5061/dryad.hb5b0.2/12.2
title: RAxML-Trees

description: 20 RAxML Best trees (GTR+G) + 20 Bipartitions (GTR+G) obtained from five different partitions (missing data) with four different taxon samples.
DOI: 10.5061/dryad.m27qq.1
title: Data from: Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
DOI: 10.5061/dryad.m27qq.2
title: Data from: Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
DOI: 10.5061/dryad.m27qq.2/1.2
title: heliconius_genome_scaffolding_scripts.tar
DOI: 10.5061/dryad.m27qq.2/2.2
title: Predicted chemosensory proteins, odorant binding proteins and olfactory receptors in the H. melpomene reference genome

description: The data file contains putative coding and amino acid sequences for the chemosensory protein (CSP), odorant binding protein (OBP) and olfactory receptor (Or) gene families identified in the version 1.1 Heliconius melpomene melpomene reference genome. These gene predictions were based on manual curation of automated gene predictions (Maker, Augustus) or in silico gene predictions based on reciprocal blast searches of the monarch Danaus plexippus and silkmoth Bombyx mori genomes. Future refinements of these gene models will be greatly improved by the availability of RNA-seq data.
DOI: 10.5061/dryad.mt24h/38
title: No.19 TB patient's microbiome (Group B)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/39
title: No.20 TB patient's microbiome (Group A)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/40
title: No.20 TB patient's microbiome (Group B)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/41
title: No.21 TB patient's microbiome (Group A)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/42
title: No.21 TB patient's microbiome (Group B)
DOI: 10.5061/dryad.mt24h/43
title: No.22 TB patient's microbiome (Group A)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/44
title: No.22 TB patient's microbiome (Group B)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/45
title: No.23 TB patient's microbiome (Group A)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.mt24h/46
title: No.23 TB patient's microbiome (Group B)

description: Group A means the microbiome from lesion-free lung lobe; Group B means the microbiome from lesion-forming lung lobe; Group H means the microbiome from healthy individuals.
DOI: 10.5061/dryad.nd1hg/10
title: Origin and number of frogs used for mtDNA analysis

description: Populations, geographic coordinates and sample sizes of samples used for mtDNA analysis. The column “Microsat No.*” refers to the numbering of populations in Table S1 (new), where only populations used in microsatellite analyses are listed. Types of mtDNA are abbreviated as follows: les = lessonae-type, rid = ridibundus-type, ber = bergeri-type, cf. bed = cf. bedriagae-type.
DOI: 10.5061/dryad.nd1hg/9
title: Study sites, sample sizes and population composition

description: Geographic coordinates, sample sizes and genotypic composition of water frog populations sampled for microsatellite analysis. Classification was based on microsatellite results and was complemented by additional information on the population through personal observation (e.g. on presence of parental genotypes even though none were captured for sampling). nL represents the number of individuals used for the L genome data set, nR stands for the number of individuals used for the R genome data set. N represents the number of individuals used in total from the respective population. Percentages account for the proportion of genotypes within N. Please note that the population marked with * is a subsample from a larger sample. Individuals from this population used in this study were selected to represent the proportion of genotypes in the larger original sample, which partly resulted in a deviation in sample size between nL and nR.
DOI: 10.5061/dryad.s171t/1
title: Families

description: Data on crosses to make experimental families and associated phenotypic data on broodstock
DOI: 10.5061/dryad.s171t/2
title: Offspring

description: Data on sampled offspring (inlcuding assigments back to parents) caught at various life stages by electrofishing, in traps, or in the hatchery
DOI: 10.5061/dryad.1017n/1
title: TDE.basicmodel.Kingsolver&Woods.30sept2015

description: This file contains the R program code and information to solve the time-dependent model for growth rate described in the associated paper.  The model consists of a coupled system of three ordinary differential equations that, given parameter values an initial conditions, is solved numerically.
DOI: 10.5061/dryad.2k4v4/1
title: Data files for publication: Measurement of systemic mitochondrial function in advanced Primary Open-Angle Glaucoma and Leber Hereditary Optic Neuropathy

description: All files in WinRAR compressed file.
DOI: 10.5061/dryad.30c8p/14
title: CCPValuesGenoAveragedByDog

description: Clinical Chemistry phenotype data averaged by dog for 335 dogs selected as clinically healthy with genotype data for ALT activity and Amylase activity.
DOI: 10.5061/dryad.30c8p/15
title: PhenotypeKeyCBCResid

description: Key for column names for CBC Residual text file.
DOI: 10.5061/dryad.30c8p/16
title: PhenotypeKeyCCPResid

description: Key for column names for CCP Residual text file.
DOI: 10.5061/dryad.30c8p/17
title: PlinkBreedFreqForALTAssocSNP

description: List of breeds shown in figure 3 along with number of chromosomes (column 2 ) and number of dogs (column 3) on which mean allele frequency for breed was based.
DOI: 10.5061/dryad.30rf6/1
title: snail_kite_data.rtfd

description: Transition probabilities for adult Everglade snail kites used for optimization model.
DOI: 10.5061/dryad.31733/43
title: RUN5-TAG35_R1_paired.fastq

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/44
title: RUN5-TAG35_R2_paired.fastq

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/45
title: RUN3-TAG-57_R1_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/46
title: RUN3-TAG-57_R2_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/47
title: RUN3-TAG-59_R1_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/48
title: RUN3-TAG-59_R2_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/49
title: RUN3-TAG-65_R1_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/50
title: RUN3-TAG-65_R2_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/51
title: RUN3-TAG-66_R1_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.31733/52
title: RUN3-TAG-66_R2_paired

description: Fastq data : see sup. table 1 (MER-15-0195) for more details
DOI: 10.5061/dryad.32535/1
title: Slices through male and female stag beetle jaws

description: Slices through a male and female Cyclommatus metallifer stag beetle jaw. The data have been processed using ShapeDesigner software (http://www.mechatools.com/en/shapedesigner.html). The file name indicates the position of each slice along the jaw.
DOI: 10.5061/dryad.3jv25/2
title: Yee et al PLoS One 2015 stoichiometry data

description: Data set contains nutrient (carbon, nitrogen, C:N) and stable isotope (d15N, d13C) values of both sexes of adult mosquitoes of three species of mosquitoes across different detrital environments.
DOI: 10.5061/dryad.41s01/1
title: jebdryad

description: Personality data with correpsonding variables in final model.
DOI: 10.5061/dryad.41s01/2
title: jebpedig

description: Pedigree used to estimate quantitatve genetic effects
DOI: 10.5061/dryad.4f3c5/1
title: EPI image data simulating BOLD fMRI run

description: This zip archive contains phantom images (nifti format), using a EPI pulse sequence, corresponding to 60 repetitions (sets). Each set consists of 30 slices across the entire phantom. The phantom is rotated after every 15 sets to simulate a BOLD-EPI fMRI scan.
DOI: 10.5061/dryad.4f3c5/2
title: Gradient Echo scan of the phantom 1 st set

description: This zip archive contains phantom images (nifti format), using a Gradient Echo pulse sequence, corresponding to the 1st of 4 repetitions (sets). Each set consists of 30 slices across the entire phantom. The phantom is rotated once after the 2nd set to simulate a BOLD-GRE fMRI scan.
DOI: 10.5061/dryad.4f3c5/3
title: Gradient echo scan of phantom  2nd set

description: This zip archive contains phantom images (nifti format), using a Gradient Echo pulse sequence, corresponding to the 2nd of 4 repetitions (sets). Each set consists of 30 slices across the entire phantom. The phantom is rotated once after the 2nd set to simulate a BOLD-GRE fMRI scan.
DOI: 10.5061/dryad.4f3c5/4
title: Gradient echo scan of phantom 3rd set

description: This zip archive contains phantom images (nifti format), using a Gradient Echo pulse sequence, corresponding to the 3rd of 4 repetitions (sets). Each set consists of 30 slices across the entire phantom. The phantom is rotated once after the 2nd set to simulate a BOLD-GRE fMRI scan.
DOI: 10.5061/dryad.4f3c5/5
title: Gradient Echo Scan of phantom 4th set

description: This zip archive contains phantom images (nifti format), using a Gradient Echo pulse sequence, corresponding to the 4th of 4 repetitions (sets). Each set consists of 30 slices across the entire phantom. The phantom is rotated once after the 2nd set to simulate a BOLD-GRE fMRI scan.
DOI: 10.5061/dryad.564sc/10
title: Intracellular parasites can synthesize PtdThr using free threonine in cultures. (FigS14B)

description: MS and MS2 data showing the incorporation of U-13C Threonine incorporation into PtdThr.
DOI: 10.5061/dryad.564sc/8
title: Mass spectra recorded at the elution time of PtdThr (FigS2B)

description: In human fibroblasts, no PtdThr related ions are detected at the retention time PtdThr from T. gondii eluted. Detected ions are PtdSer species.
DOI: 10.5061/dryad.564sc/9
title: Intracellular parasites can synthesize PtdThr using free threonine in cultures. (FigS14A)

description: MS and MS2 data of PtdThr species
DOI: 10.5061/dryad.6354b.1
title: Data from: Clonal relatedness between lobular carcinoma in situ and synchronous malignant lesions
DOI: 10.6084/m9.figshare.25662771
title: Eukaryotic viruses encode the ribosomal protein eL40

description: The genome of FloV-SA2 , a cultivated marine virus in the family <i>Mesomimiviridae</i> (phylum <i>Nucleocytoviricota</i>) was sequenced and encodes both a ribosomal protein (eL40) and a Group II viral rhodopsin. eL40-phylogeny/ contains the protein alignment trimmed and untrimmed and phylogenetic trees Kaks/ is the input and output files from Kaks_CalculatorRhodopsin/ contains the protein alignment trimmed and untrimmed and the phylogenetic trees. Rhodopsins_spread_sheet is the template used for phylogenetic tree annotation
DOI: 10.15468/dl.vm5p3z
title: Occurrence Download

description: A dataset containing 9251028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Asparagales)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 9251028 records from 5278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086561-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18749/dodis-2824
title: dodis.ch/2824
DOI: 10.18749/dodis-2825
title: dodis.ch/2825
DOI: 10.18749/dodis-2826
title: dodis.ch/2826
DOI: 10.18749/dodis-7850
title: dodis.ch/7850
DOI: 10.18749/dodis-7851
title: dodis.ch/7851
DOI: 10.18749/dodis-7852
title: dodis.ch/7852
DOI: 10.18749/dodis-7853
title: dodis.ch/7853
DOI: 10.18749/dodis-7854
title: dodis.ch/7854
DOI: 10.18749/dodis-7855
title: dodis.ch/7855
DOI: 10.18749/dodis-7860
title: dodis.ch/7860
DOI: 10.18749/dodis-7861
title: dodis.ch/7861