cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19634686
title: Table S12 from The genetic basis of structural colour variation in mimetic <i>Heliconius</i> butterflies

description: Structural colours, produced by the reflection of light from ultrastructures, have evolved multiple times in butterflies. Unlike pigmentary colours and patterns, little is known about the genetic basis of these colours. Reflective structures on wing-scale ridges are responsible for iridescent structural colour in many butterflies, including the Müllerian mimics <i>Heliconius erato</i> and <i>Heliconius melpomene.</i> Here, we quantify aspects of scale ultrastructure variation and colour in crosses between iridescent and non-iridescent subspecies of both of these species and perform quantitative trait locus (QTL) mapping. We show that iridescent structural colour has a complex genetic basis in both species, with offspring from crosses having a wide variation in blue colour (both hue and brightness) and scale structure measurements. We detect two different genomic regions in each species that explain modest amounts of this variation, with a sex-linked QTL in <i>H. erato</i> but not <i>H. melpomene.</i> We also find differences between species in the relationships between structure and colour, overall suggesting that these species have followed different evolutionary trajectories in their evolution of structural colour. We then identify genes within the QTL intervals that are differentially expressed between subspecies and/or wing regions, revealing likely candidates for genes controlling structural colour formation.This article is part of the theme issue ‘Genetic basis of adaptation and speciation: from loci to causative mutations’.
DOI: 10.6084/m9.figshare.19634689
title: Table S11 from The genetic basis of structural colour variation in mimetic <i>Heliconius</i> butterflies

description: Structural colours, produced by the reflection of light from ultrastructures, have evolved multiple times in butterflies. Unlike pigmentary colours and patterns, little is known about the genetic basis of these colours. Reflective structures on wing-scale ridges are responsible for iridescent structural colour in many butterflies, including the Müllerian mimics <i>Heliconius erato</i> and <i>Heliconius melpomene.</i> Here, we quantify aspects of scale ultrastructure variation and colour in crosses between iridescent and non-iridescent subspecies of both of these species and perform quantitative trait locus (QTL) mapping. We show that iridescent structural colour has a complex genetic basis in both species, with offspring from crosses having a wide variation in blue colour (both hue and brightness) and scale structure measurements. We detect two different genomic regions in each species that explain modest amounts of this variation, with a sex-linked QTL in <i>H. erato</i> but not <i>H. melpomene.</i> We also find differences between species in the relationships between structure and colour, overall suggesting that these species have followed different evolutionary trajectories in their evolution of structural colour. We then identify genes within the QTL intervals that are differentially expressed between subspecies and/or wing regions, revealing likely candidates for genes controlling structural colour formation.This article is part of the theme issue ‘Genetic basis of adaptation and speciation: from loci to causative mutations’.
DOI: 10.6084/m9.figshare.19634686.v1
title: Table S12 from The genetic basis of structural colour variation in mimetic <i>Heliconius</i> butterflies

description: Structural colours, produced by the reflection of light from ultrastructures, have evolved multiple times in butterflies. Unlike pigmentary colours and patterns, little is known about the genetic basis of these colours. Reflective structures on wing-scale ridges are responsible for iridescent structural colour in many butterflies, including the Müllerian mimics <i>Heliconius erato</i> and <i>Heliconius melpomene.</i> Here, we quantify aspects of scale ultrastructure variation and colour in crosses between iridescent and non-iridescent subspecies of both of these species and perform quantitative trait locus (QTL) mapping. We show that iridescent structural colour has a complex genetic basis in both species, with offspring from crosses having a wide variation in blue colour (both hue and brightness) and scale structure measurements. We detect two different genomic regions in each species that explain modest amounts of this variation, with a sex-linked QTL in <i>H. erato</i> but not <i>H. melpomene.</i> We also find differences between species in the relationships between structure and colour, overall suggesting that these species have followed different evolutionary trajectories in their evolution of structural colour. We then identify genes within the QTL intervals that are differentially expressed between subspecies and/or wing regions, revealing likely candidates for genes controlling structural colour formation.This article is part of the theme issue ‘Genetic basis of adaptation and speciation: from loci to causative mutations’.
DOI: 10.6084/m9.figshare.19634689.v1
title: Table S11 from The genetic basis of structural colour variation in mimetic <i>Heliconius</i> butterflies

description: Structural colours, produced by the reflection of light from ultrastructures, have evolved multiple times in butterflies. Unlike pigmentary colours and patterns, little is known about the genetic basis of these colours. Reflective structures on wing-scale ridges are responsible for iridescent structural colour in many butterflies, including the Müllerian mimics <i>Heliconius erato</i> and <i>Heliconius melpomene.</i> Here, we quantify aspects of scale ultrastructure variation and colour in crosses between iridescent and non-iridescent subspecies of both of these species and perform quantitative trait locus (QTL) mapping. We show that iridescent structural colour has a complex genetic basis in both species, with offspring from crosses having a wide variation in blue colour (both hue and brightness) and scale structure measurements. We detect two different genomic regions in each species that explain modest amounts of this variation, with a sex-linked QTL in <i>H. erato</i> but not <i>H. melpomene.</i> We also find differences between species in the relationships between structure and colour, overall suggesting that these species have followed different evolutionary trajectories in their evolution of structural colour. We then identify genes within the QTL intervals that are differentially expressed between subspecies and/or wing regions, revealing likely candidates for genes controlling structural colour formation.This article is part of the theme issue ‘Genetic basis of adaptation and speciation: from loci to causative mutations’.
DOI: 10.6084/m9.figshare.19634692
title: Table S7 from The genetic basis of structural colour variation in mimetic <i>Heliconius</i> butterflies

description: Genes differentially expressed (FDR&lt;0.2) between H. melpomene cythera and H. melpomene rosina at 5 DPP
DOI: 10.6084/m9.figshare.19634692.v1
title: Table S7 from The genetic basis of structural colour variation in mimetic <i>Heliconius</i> butterflies

description: Genes differentially expressed (FDR&lt;0.2) between H. melpomene cythera and H. melpomene rosina at 5 DPP
DOI: 10.6073/pasta/2ac301592b4b58d0f38bdc3ea362ccfc
title: Digital terrain models derived from UAV overflights of the fifteen NPP study sites at Jornada Basin LTER in 2019

description: This data package contains digital terrain models (DTMs) of each of the 15 NPP study sites at the Jornada Basin LTER in southern New Mexico, USA. The models were derived from raw images collected during uncrewed aerial vehicle (UAV) overflight missions conducted in late summer and early autumn of 2019 (1 overflight day per site). For each site one or two missions were flown during an afternoon using a DJI Phantom 4 UAV, and between 450 and 1300 12.4 megapixel RGB images were captured. A subset of images captured at each site were loaded into Agisoft Metashape software to derive DTMs using a structure from motion method. These models do not include the elevations of aboveground features such as vegetation and large rocks. The raw images are not provided but can be made available via project PIs. This data package includes one centimeter resolution DTMs of all 15 sites as geotiff raster files. Other derived products from these UAV missions, including orthomosaic photos, digital elevation models, and sparse point clouds, are available in other EDI data packages (knb-lter-jrn.210543001, knb-lter-jrn.210543002, and knb-lter-jrn.210543004, respectively). This study is complete.
DOI: 10.6084/m9.figshare.19646547
title: Fluidization of bed material caused by shear thinning during rock avalanche entrainment: insights from flume tests and rheological experiments

description: original data
DOI: 10.6084/m9.figshare.19646547.v1
title: Fluidization of bed material caused by shear thinning during rock avalanche entrainment: insights from flume tests and rheological experiments

description: original data
DOI: 10.23729/f87ce8d5-610f-40cc-895e-9f3a4b64384b
title: CircVol lab day 180

description: CircVol (https://6aika.fi/project/circvol/) was a project where new uses were developed for waste materials to promote circular economy. In this part of the project dredging mass from Matalahti in Naantali was stabilized using several recipes. More information from: Jarva, J., Eriksson, J.-E., Larkela, L, Auri, J., Kronberg, T., Tarvainen, T., Kuva, J., Järvinen, M., Hänninen, H., Lehtonen, M., Ketola, M., Huhtinen, R., 2021. CircVol-projekti: ruoppausmassojen stabiloinnin kenttäkoe Naantalin Matalahdella. Geologian Tutkimuskeskus. Työraportti 19/2021. This dataset is day 180 scans of lab samples. Preview dataset found at https://doi.org/10.23729/062f9c85-5dcb-4369-a526-9bc245558b62 . To obtain data, please contact fairdata-pas@gtk.fi .
DOI: 10.6084/m9.figshare.19525708.v2
title: Table_S3_summary_bacteria_sample_features

description: Key features of the bacterial samples. Plasmid_PPI indicates the number of plasmid-related PPIs; Chrom_PPI indicates the number of chromosomal PPIs; Fraction indicates the fraction of PPIs that were plasmid-related; inputProteins indicates the number of proteins per sample; interactions indicates the total number of PPIs; Plasmid_genes indicates the number of plasmid-related genes per sample; aPMNLE indicates the chromosomal proteins' aPMNLE; cTri indicates the number of chromosomal protein trios; loops indicates the number of indirect connections for chromosomal proteins; ccs indicates the number of connected components for chromosomal proteins; aPMNLE_all indicates the aPMNLE for all proteins; cTri_all indicates the number of protein trios; loops_all indicates the number of indirect connections; ccs_all indicates the number of connected components.
DOI: 10.5281/zenodo.6451293
title: Supplementary Material for Mapping Active Site Geometry to Activity in Immobilized Frustrated Lewis Pair Catalysts

description: Supplementary Material for "Mapping Active Site Geometry to Activity in Immobilized Frustrated Lewis Pair Catalysts".
DOI: 10.5281/zenodo.6451292
title: Supplementary Material for Mapping Active Site Geometry to Activity in Immobilized Frustrated Lewis Pair Catalysts

description: Supplementary Material for "Mapping Active Site Geometry to Activity in Immobilized Frustrated Lewis Pair Catalysts".
DOI: 10.6084/m9.figshare.19525708.v3
title: Table_S3_summary_bacteria_sample_features

description: Key features of the bacterial samples. Plasmid_PPI indicates the number of plasmid-related PPIs; Chrom_PPI indicates the number of chromosomal PPIs; Fraction indicates the fraction of PPIs that were plasmid-related; inputProteins indicates the number of proteins per sample; interactions indicates the total number of PPIs; Plasmid_genes indicates the number of plasmid-related genes per sample; aPMNLE indicates the chromosomal proteins' aPMNLE; cTri indicates the number of chromosomal protein trios; loops indicates the number of indirect connections for chromosomal proteins; ccs indicates the number of connected components for chromosomal proteins; aPMNLE_all indicates the aPMNLE for all proteins; cTri_all indicates the number of protein trios; loops_all indicates the number of indirect connections; ccs_all indicates the number of connected components. Note some PMNLE values were not computational tractable and so the cells are empty.
DOI: 10.6084/m9.figshare.19646595
title: Dataset for "Precipitation and land use alter soil respiration in an Inner Mongolian grassland"

description: Dataset for "Precipitation and land use alter soil respiration in an Inner Mongolian grassland"
DOI: 10.6084/m9.figshare.19646595.v1
title: Dataset for "Precipitation and land use alter soil respiration in an Inner Mongolian grassland"

description: Dataset for "Precipitation and land use alter soil respiration in an Inner Mongolian grassland"
DOI: 10.5281/zenodo.6458285
title: Data and code for figures of "Gigahertz free-space electro-optic modulators based on Mie resonances" by Benea-Chelmus et al.

description: This upload contains the main dataset represented in the figures of the following publication: "Gigahertz free-space electro-optic modulators based on Mie resonances"" by Benea-Chelmus et al.
DOI: 10.5281/zenodo.6458284
title: Data and code for figures of "Gigahertz free-space electro-optic modulators based on Mie resonances" by Benea-Chelmus et al.

description: This upload contains the main dataset represented in the figures of the following publication: "Gigahertz free-space electro-optic modulators based on Mie resonances"" by Benea-Chelmus et al.
DOI: 10.25375/uct.19630461
title: Prey Detection distances of Rhinolophus capensis under different climatic conditions

description: Raw Data for analysis that entailed looking at the detection distances when calculated using atmospheric conditions of flight paths recorded in the desert at Wondergat cave (Northern Province, South Africa) with a) average desert frequency with either average SL (pulse frequency and source level - Stilz and Schnitzler 2012) from the desert and fynbos biome b) average desert SL with average frequency from the desert and fynbos biome c) the average frequency and SL for each biome.
DOI: 10.25375/uct.19630461.v1
title: Prey Detection distances of Rhinolophus capensis under different climatic conditions

description: Raw Data for analysis that entailed looking at the detection distances when calculated using atmospheric conditions of flight paths recorded in the desert at Wondergat cave (Northern Province, South Africa) with a) average desert frequency with either average SL (pulse frequency and source level - Stilz and Schnitzler 2012) from the desert and fynbos biome b) average desert SL with average frequency from the desert and fynbos biome c) the average frequency and SL for each biome.
DOI: 10.5281/zenodo.6482567
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.6084/m9.figshare.19646631.v1
title: STIs prevalence among young adults aged 18-24years in Mbeya-Tanzania

description: STI prevalence data for the study condycted among young adults, 18-24 year old, attending Higher Learning Institutions in Mbeya, Tanzania.
DOI: 10.6084/m9.figshare.19646631
title: STIs prevalence among young adults aged 18-24years in Mbeya-Tanzania

description: STI prevalence data for the study condycted among young adults, 18-24 year old, attending Higher Learning Institutions in Mbeya, Tanzania.
DOI: 10.6084/m9.figshare.19093115.v1
title: STI prevalence at HLI Mbeya, Tanzania

description: STI prevalence data for the study condycted among young adults, 18-24 year old, attending Higher Learning Institutions in Mbeya, Tanzania.
DOI: 10.34711/inptdat.530
title: Streamer-surface interaction in an atmospheric pressure dielectric barrier discharge in argon - dataset

description: The results of the modelling of an atmospheric-pressure dielectric barrier discharge (DBD) in argon obtained using a time-dependent and spatially two-dimensional fluid-Poisson model in axisymmetric geometry are provided in this dataset. The spatiotemporal evolution of the electron number density, electric current, applied, memory and gap voltage, the spatial distribution of the number density of electrons and argon excited atoms, the electric field, electron production and loss rates, and surface charge density distribution are used for the analysis of the surface-streamer interaction and the cathode-layer formation. The analyses showed that the radial deflection of the volume streamer is driven by the free electrons that remained in the volume from the Townsend pre-phase and guided by the radial component of the electric field. The surface discharge, occurring simultaneously with the propagation of the deflected volume streamer, is governed by ion-induced secondary electron emission and the surface charges accumulated on the dielectric.
DOI: 10.5281/zenodo.6480800
title: Estimation of groundwater flow rate by an actively heated fiber optics based thermal response test in a grouted borehole

description: The dataset contains the numerical data and the <em>in-situ</em> measurements in the manuscript titled "Estimation of groundwater flow rate by an actively heated fiber-optics-based thermal response test in a grouted borehole". The data is stored in MAT files, which are Binary MATLAB files. There are a series of codes used in this manuscript to estimate groundwater flow rates. The codes were written in MATLAB Live Script, version 2021b. The numerical data contains temperatures of the heating stage in different thermal response tests in a numerical model, which considers the borehole effects. The model is set up by COMSOL Multiphysics, and a series of flow rates is set to the model respectively for different thermal response tests. The <em>in-situ</em> measurements include temperatures of the heating stage in an actively heated fiber-optics-based thermal response test, which was performed in July 2021 in the grouted borehole, which is located in the lower section of the Sima bend of the Yangtze River. The temperature for the flow rate estimation was thinned to 120 s records from 10s records for the limited computing resources. The <em>data_process.mlx</em> provides pre-processing for the observational data recorded by Silixa Ultima-M MK2 DTS. The <em>estimation_process.mlx </em>gives a groundwater flow estimation case in a grouted borehole.
DOI: 10.5281/zenodo.6480799
title: Estimation of groundwater flow rate by an actively heated fiber optics based thermal response test in a grouted borehole

description: The dataset contains the numerical data and the <em>in-situ</em> measurements in the manuscript titled "Estimation of groundwater flow rate by an actively heated fiber-optics-based thermal response test in a grouted borehole". The data is stored in MAT files, which are Binary MATLAB files. There are a series of codes used in this manuscript to estimate groundwater flow rates. The codes were written in MATLAB Live Script, version 2021b. The numerical data contains temperatures of the heating stage in different thermal response tests in a numerical model, which considers the borehole effects. The model is set up by COMSOL Multiphysics, and a series of flow rates is set to the model respectively for different thermal response tests. The <em>in-situ</em> measurements include temperatures of the heating stage in an actively heated fiber-optics-based thermal response test, which was performed in July 2021 in the grouted borehole, which is located in the lower section of the Sima bend of the Yangtze River. The temperature for the flow rate estimation was thinned to 120 s records from 10s records for the limited computing resources. The <em>data_process.mlx</em> provides pre-processing for the observational data recorded by Silixa Ultima-M MK2 DTS. The <em>estimation_process.mlx </em>gives a groundwater flow estimation case in a grouted borehole.
DOI: 10.6084/m9.figshare.19137414
title: Ant diversity and composition patterns along the urbanization gradients in an arid city

description: The dramatic increased rates of uncontrolled urbanisation in various parts of the World have resulted in loss of native species and overall threats to biodiversity. Over the last few decades Saudi Arabia has witnessed a remarkably rapid population growth and unparalleled levels of urbanisation, leading to threats to biodiversity. In this study we focused on arid city (Riyadh, Saudi Arabia) where ant assemblages cross an urban-rural gradient. Ants were collected by pitfall traps from 15 sites along three different urbanisation gradients at 3-monthly intervals throughout 1 year. Ant abundance, species richness, evenness, and α diversity were consistent across the urbanisation gradient. However, significant differences were observed in ant β diversity and assemblage composition between rural and urban, suburban and urban, but not between rural and suburban sites. Eleven ant species were identified as indicator species (IV values between 50.7% and 80.7%). These ant assemblages were influenced by flora, ground cover, soil variables, and urbanisation characteristics. To conclude, we found a significant effect of urbanisation on the β diversity and composition of ant assemblages.
DOI: 10.6084/m9.figshare.19137414.v1
title: Ant diversity and composition patterns along the urbanization gradients in an arid city

description: The dramatic increased rates of uncontrolled urbanisation in various parts of the World have resulted in loss of native species and overall threats to biodiversity. Over the last few decades Saudi Arabia has witnessed a remarkably rapid population growth and unparalleled levels of urbanisation, leading to threats to biodiversity. In this study we focused on arid city (Riyadh, Saudi Arabia) where ant assemblages cross an urban-rural gradient. Ants were collected by pitfall traps from 15 sites along three different urbanisation gradients at 3-monthly intervals throughout 1 year. Ant abundance, species richness, evenness, and α diversity were consistent across the urbanisation gradient. However, significant differences were observed in ant β diversity and assemblage composition between rural and urban, suburban and urban, but not between rural and suburban sites. Eleven ant species were identified as indicator species (IV values between 50.7% and 80.7%). These ant assemblages were influenced by flora, ground cover, soil variables, and urbanisation characteristics. To conclude, we found a significant effect of urbanisation on the β diversity and composition of ant assemblages.
DOI: 10.6084/m9.figshare.19634436
title: Supplement Table 3 from Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes

description: Additional metadata for samples in this study
DOI: 10.6084/m9.figshare.19634436.v1
title: Supplement Table 3 from Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes

description: Additional metadata for samples in this study
DOI: 10.6084/m9.figshare.19615236.v1
title: Argon plasma-modified bacterial cellulose filters for protection against respiratory pathogens

description: Raw data used for preparation of publication entitled "<strong>Argon plasma-modified bacterial cellulose filters for protection against respiratory pathogens</strong>"
DOI: 10.6084/m9.figshare.19646770
title: Phenotype data for the three crosses from Age-dependent genetic architecture across ontogeny of body size in sticklebacks

description: Excel file containing body size measurements at each age for all crosses and detailed explanation of the data.
DOI: 10.6084/m9.figshare.19646770.v1
title: Phenotype data for the three crosses from Age-dependent genetic architecture across ontogeny of body size in sticklebacks

description: Excel file containing body size measurements at each age for all crosses and detailed explanation of the data.