cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.56k5ct
title: Occurrence Download

description: A dataset containing 109907 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Algeria",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 109907 records from 277 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241264-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uyygk5
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bunocephalus knerii",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 24 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008137-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18608575
title: CARINA_SOC_Dataset_Industrial_Ita

description: The Excel file reports primary and secondary data used for the social assessment of the industrial phase performed in task 3.3 of the CARINA project. The dataset is specific for Italy.
DOI: 10.5281/zenodo.18608576
title: CARINA_SOC_Dataset_Industrial_Ita

description: The Excel file reports primary and secondary data used for the social assessment of the industrial phase performed in task 3.3 of the CARINA project. The dataset is specific for Italy.
DOI: 10.17605/osf.io/zdnfv
title: Effects of speech periodicity and speech rate on auditory-motor coupling during speech comprehension

description: According to neural oscillatory accounts, periodicity at the syllabic scale enhances speech comprehension through theta brain rhythms. Natural speech, however, is not strictly periodic and stronger periodicity, such as under conditions of fast speech, may hinder comprehension. Using magnetoencephalography, we investigate how natural variation in syllabic-level periodicity affects comprehension and auditory-motor coupling in brain areas related to temporal speech processing. We model speech periodicity and rate independently. Theta-band phase coupling between the posterior superior temporal gyrus (pSTG) and speech motor areas is assessed using Gaussian-Copula Mutual Information (GCMI). We find that faster syllabic rates and lower periodicity are associated with stronger coupling between the pSTG and inferior precentral gyrus, but also inferior frontal gyrus and supplementary motor areas. Comprehension improves with lower periodicity and declines at faster rates. The syllabic rate and periodicity moderate the coupling-comprehension relationship, possibly reflecting a complex interplay of lower-level auditory processing and higher-level prediction from the speech motor cortices. These findings suggest a sweet spot for natural, less periodic speech rhythms that support optimal processing and emphasize the necessity to investigate natural speech.
DOI: 10.5281/zenodo.18608603
title: xenocharax_spilurus_spades_02.fasta.gz
DOI: 10.5281/zenodo.18608604
title: xenocharax_spilurus_spades_02.fasta.gz
DOI: 10.15468/dl.trnm44
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Bienertia cycloptera"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008139-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axu39b
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blandfordia punicea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 197 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008138-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18605840
title: CARINA_ECO_Dataset_Bioplastics

description: The Excel file reports primary and secondary data used for the economic assessment of the industrial phase conducted in task 3.2 of the CARINA project. The dataset is specific for the bioplastic production involved in CARINA value chains, and its benchmark.
DOI: 10.5281/zenodo.18605841
title: CARINA_ECO_Dataset_Bioplastics

description: The Excel file reports primary and secondary data used for the economic assessment of the industrial phase conducted in task 3.2 of the CARINA project. The dataset is specific for the bioplastic production involved in CARINA value chains, and its benchmark.
DOI: 10.15468/dl.82yx7w
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ernstichthys intonsus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008140-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18608563
title: Data and code for: Mycorrhizal control of litter to SOC pathways

description: This Zenodo record provides the data and code supporting the manuscript.

Contents





data: curated datasets used in the analyses (see Readme.xlsx/README for variable definitions and data sources).




code: R scripts to reproduce the analyses and figures reported in the manuscript.



Reproducibility





Software: R (>= 4.2).




Run order: see README for the recommended run order of scripts.
DOI: 10.5281/zenodo.18608564
title: Data and code for: Mycorrhizal control of litter to SOC pathways

description: This Zenodo record provides the data and code supporting the manuscript.

Contents





data: curated datasets used in the analyses (see Readme.xlsx/README for variable definitions and data sources).




code: R scripts to reproduce the analyses and figures reported in the manuscript.



Reproducibility





Software: R (>= 4.2).




Run order: see README for the recommended run order of scripts.
DOI: 10.6084/m9.figshare.29651870
title: Complex effects of sex reversal on reproductive success in wild frogs (data and code)

description: This contains 8 datasets in csv format (semicolon-separated) and 2 annotated R scripts in pdf format, one for replicating the statistical analyses (and displaying some R output, with detailed comments) and one for creating the graphs (Figures 2-3) for the paper "Complex effects of sex reversal on reproductive success in wild frogs". The metadata.pdf file explains the meaning of each variable in each dataset.
DOI: 10.6084/m9.figshare.29651870.v1
title: Complex effects of sex reversal on reproductive success in wild frogs (data and code)

description: This contains 8 datasets in csv format (semicolon-separated) and 2 annotated R scripts in pdf format, one for replicating the statistical analyses (and displaying some R output, with detailed comments) and one for creating the graphs (Figures 2-3) for the paper "Complex effects of sex reversal on reproductive success in wild frogs". The metadata.pdf file explains the meaning of each variable in each dataset.
DOI: 10.6084/m9.figshare.29651870.v2
title: Complex effects of sex reversal on reproductive success in wild frogs (data and code)

description: This contains 8 datasets in csv format (semicolon-separated) and 2 annotated R scripts in pdf format, one for replicating the statistical analyses (and displaying some R output, with detailed comments) and one for creating the graphs (Figures 2-3) for the paper "Complex effects of sex reversal on reproductive success in wild frogs". The metadata.pdf file explains the meaning of each variable in each dataset.
DOI: 10.15468/dl.npfqam
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alania cunninghamii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 182 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008141-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc1qbxhg
title: CCDC 1589416: Experimental Crystal Structure Determination

description: Related Article: Kai-Xin Sun, Qian-wei He, Bin-Bin Xu, Xiangting Wu, Jian-Mei Lu|2018|Asian J.Org.Chem|7|781|doi:10.1002/ajoc.201800001
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20k2nb
title: CCDC 1863461: Experimental Crystal Structure Determination

description: Related Article: Perumal Venkatesan, Margarita Cerón, Enrique Pérez-Gutiérrez, Armando E. Castillo, Subbiah Thamotharan, Fernando Robles, Maxime A. Siegler, M. Judith Percino|2019|ChemistryOpen|8|483|doi:10.1002/open.201900061
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20k2pc
title: CCDC 1863462: Experimental Crystal Structure Determination

description: Related Article: Perumal Venkatesan, Margarita Cerón, Enrique Pérez-Gutiérrez, Armando E. Castillo, Subbiah Thamotharan, Fernando Robles, Maxime A. Siegler, M. Judith Percino|2019|ChemistryOpen|8|483|doi:10.1002/open.201900061
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kqbvh
title: CCDC 2374967: Experimental Crystal Structure Determination

description: Related Article: Lihong Tian, Jie-Ping Wan, Yunyun Liu|2024|Green Synth. Cat.|7|110|doi:10.1016/j.gresc.2024.09.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l1h7d
title: CCDC 2384713: Experimental Crystal Structure Determination

description: Related Article: Bhagyashree Ravsaheb Salunkhe, E. Soorya, Subhash S. Pingale, Ratnamala Bendre, Shobha Waghmode, Sharda Gadale|2025|Chem. Sel.|10|e00759|doi:10.1002/slct.202500759
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.20351/29sg20180101_ts
title: SARMIENTO DE GAMBOA 2018 thermosalinograph data
title: 29SG20180101_ts

description: Sea surface temperature and salinity data acquired on board the R/V Sarmiento de Gamboa with a Seabird SB21 thermosalinograph in continuous mode during 2018.
DOI: 10.20351/29sg20180101_sbe
title: SARMIENTO DE GAMBOA 2018 singlebeam data
title: 29SG20180101_sbe

description: Singlebeam data acquired on board the R/V Sarmiento de Gamboa with a Kongsberg EA 600 echosounder during 2018.
DOI: 10.20351/29sg20180101_met
title: SARMIENTO DE GAMBOA 2018 meteorological data
title: 29SG20180101_met

description: Meteorological data acquired on board the R/V Sarmiento de Gamboa with a Campbell CR 1000 Station in continuous mode during 2018.
DOI: 10.20351/29sg20190101_sbe
title: SARMIENTO DE GAMBOA 2019 singlebeam data
title: 29SG20190101_sbe

description: Singlebeam data acquired on board the R/V Sarmiento de Gamboa with a Kongsberg EA 600 echosounder during 2019.
DOI: 10.15468/dl.98mab8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Bienertia sinuspersici"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008143-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a95uu3
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Kalidium foliatum"
 ]
}

 The dataset includes 772 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008144-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5znrd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ernstichthys megistus",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008145-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.20351/29sg20190101_met
title: SARMIENTO DE GAMBOA 2019 meteorological data
title: 29SG20190101_met

description: Meteorological data acquired on board the R/V Sarmiento de Gamboa with a Campbell CR 1000 Station in continuous mode during 2019.
DOI: 10.20351/29sg20190101_ts
title: SARMIENTO DE GAMBOA 2019 thermosalinograph data
title: 29SG20190101_ts

description: Sea surface temperature and salinity data acquired on board the R/V Sarmiento de Gamboa with a Seabird SB21 thermosalinograph in continuous mode during 2019.
DOI: 10.5281/zenodo.18608600
title: Non-Abelian_dynamics_in_cold_Rydberg_quantum_gases

description: The Figure5(a).rar contains the raw data for Figure 5(a) of the paper.
DOI: 10.5281/zenodo.18608599
title: Non-Abelian_dynamics_in_cold_Rydberg_quantum_gases

description: The Figure5(a).rar contains the raw data for Figure 5(a) of the paper.
DOI: 10.15468/dl.9ps2vd
title: Occurrence Download

description: A dataset containing 67918 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dodonaea viscosa",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 67918 records from 552 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008096-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caz4nf
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.32944 46.14941,-0.34232 46.13155,-0.35273 46.09273,-0.24519 46.07623,-0.19959 46.10201,-0.21793 46.14872,-0.32944 46.14941))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Chiroptera"
 ]
}

 The dataset includes 217 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008146-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.383mgg
title: Occurrence Download

description: A dataset containing 735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Borya sphaerocephala",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 735 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008147-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqja3c
title: Occurrence Download

description: A dataset containing 404769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asio otus",
 "Continent is Europe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 404769 records from 1552 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008039-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yur22
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhodeus sericeus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 374 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000988-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82144/57ccc03a
title: Acoustic detections from research cruises in the Med sea, 1994-2001

description: Original provider:
Claudio Fossati, University of Pavia

Dataset credits:
Claudio Fossati and Giulia Romè, CIBRA Center for Bioacoustics, University of Pavia

Abstract:
CIBRA Center for Bioacoustics, Univ. of Pavia, organizes research cruises in the Med sea since 1994. Visual and acoustic contacts (1994 - 2001) are available on OBIS-SEAMAP, while acoustic recordings are stored in our Sound library and available upon request.
DOI: 10.15468/dl.f9bjsg
title: Occurrence Download

description: A dataset containing 87235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Strigiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((30 30,60 30,60 60,30 60,30 30))"
 ]
}

 The dataset includes 87235 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000929-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18156285
title: HGDP+1KG Phased Reference Panel for Local Ancestry Inference (hg38)

description:  




Phased haplotypes from the joint 1000 Genomes Project (1KG) and Human Genome

 




Diversity Project (HGDP) dataset, processed and QC'd for use as a reference

 




panel in local ancestry inference (LAI) tools including RFMix v2, FLARE,

 




and G-NOMIX.

 




 

 




## Original Data Source

 




 

 




This dataset is derived from the gnomAD v3.1 HGDP+1KG joint callset:

 




- **Source**: gnomAD (Genome Aggregation Database)

 




- **URL**: https://gnomad.broadinstitute.org/downloads#v3-hgdp-1kg

 




- **Google Cloud**: `gs://gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/`

 




 

 




## Processing Applied

 




 

 




1. Downloaded phased BCF files from gnomAD Google Cloud bucket

 




2. Filtered to biallelic SNPs only

 




3. Applied MAF > 0.5% filter

 




4. Renamed chromosomes to include 'chr' prefix for hg38 compatibility

 




5. Created per-chromosome VCF.gz files with CSI indices

 




 

 




## Samples

 




 

 




- **Total samples**: 4,094 (929 HGDP + 3,165 1KG samples)

 




- **Populations**: 80 populations across 7 continental groups

 




- **Phasing**: SHAPEIT5

 




 

 




## Usage

 




 

 




These files are designed for use with the genotyping_pipeline

 




(https://github.com/chrisrob3312/genotyping_pipeline) Module 7 ancestry

 




estimation, but can be used with any LAI tool that accepts phased VCF input.

 




 

 




## Citation

 




 

 




If you use this dataset, please cite:

 




 

 




1. **gnomAD v3.1**: Karczewski KJ, et al. The mutational constraint spectrum

 




   quantified from variation in 141,456 humans. Nature. 2020;581(7809):434-443.

 




   DOI: 10.1038/s41586-020-2308-7

 




 

 




2. **HGDP**: Bergström A, et al. Insights into human genetic variation and

 




   population history from 929 diverse genomes. Science. 2020;367(6484):eaay5012.

 




   DOI: 10.1126/science.aay5012

 




 

 




3. **1000 Genomes**: 1000 Genomes Project Consortium. A global reference for

 




   human genetic variation. Nature. 2015;526(7571):68-74.

 




   DOI: 10.1038/nature15393

 

4. Joint-called 1KG-HGDP Data Resource**: Koenig Z, Yohannes MT, Nkambule LL, et al. A harmonized public resource of deeply sequenced diverse human genomes. Genome Research. 2024. https://doi.org/10.1101/gr.278378.123

 

 




 




 




 

 




RELATED IDENTIFIERS (add as "References"):

 




- DOI: 10.1038/s41586-020-2308-7 (gnomAD paper)

 




- DOI: 10.1126/science.aay5012 (HGDP paper)

 




- DOI: 10.1038/nature15393 (1000 Genomes paper)

 




- URL: https://github.com/chrisrob3312/genotyping_pipeline (Related software)

 




- URL: https://gnomad.broadinstitute.org/downloads#v3-hgdp-1kg (Source data)