cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2tvkn6j97r
title: Lithospheric thickness controls the porphyry Cu mineralization: Evidence from neighboring arc volcanic rocks. Wang et al.

description: Table 1 shows Whole-rock Mg, Sr, Nd, and Pb isotopic compositions of Eastern Tianshan volcanic rocks. Table S1 introduces the detailed location of volcanic samples from Eastern Tianshan. Table S2 lists whole-rock major and trace elemental compositions for volcanic samples from Dananhu and Yamansu arcs in Eastern Tianshan. Table S3 shows whole-rock elemental and isotopic compositions for volcanic rocks from TLIP, global island arc, and Eastern China. Table S4 shows the parameters used for mixing and AFC model calculation.
DOI: 10.17632/yj9rk7w9dd
title: Program to calculate transformation brackets of hyperspherical harmonic functions of a three body system

description: Title of program: BAO Catalogue Id: AABV_v1_0 Nature of problem The program performs the calculation of the transformation brackets of hyperspherical harmonic functions in a three body system with arbitrary masses. Versions of this program held in the CPC repository in Mendeley Data AABV_v1_0; BAO; 10.1016/0010-4655(85)90029-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.14331413.v1
title: Level of Patient Comfort and Measurement Reliability of Three Different Probes: a cross-sectional study

description: <b>METHODOLOGY</b><b>Study design and ethical considerations.</b><b> </b>This was a cross-sectional observational study. The manuscript was prepared in accordance with the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement.<sup>14</sup> The protocol was approved by the research ethics committee of the Universidad Científica del Sur, Lima, Peru (Protocol # 260 CIEI) and was conducted in accordance with the Declaration of Helsinki of 1964, in its revised form (2008). Volunteers seeking dental care at the Universidad Científica del Sur (Lima, Peru) were informed of the details of the study, instructed about its risks, and told that they were free to withdraw at any time. All patients signed a term of free and informed consent prior to beginning with the measurements. The study was conducted at the postgraduate clinic of the Universidad Científica del Sur.<br><b>Clinical evaluations </b><b> </b>Three experienced periodontists (&gt; 10 years of clinical experience), trained and calibrated, performed the clinical evaluations throughout the study. During pre-determined appointments, the volunteers were submitted to a periodontal clinical evaluation lasting approximately 10 minutes per each probe with 20 minutes intervals between measurements. This evaluation was carried out once a week for 3 consecutive weeks. Each week the periodontal evaluation was performed by a different examiner using the different probe models. The results were recorded in a data collection sheet. At the end of the last evaluation, in the third week, all participants received dental prophylaxis, free of charge. Acrylic guides were made for all participants, with respect to the teeth to be evaluated (# 16, # 21, # 24, # 36, # 41, # 44). In each acrylic model, 3 gutters were made (mesial, central, and distal) in the guides, so that each evaluator made the measurement in the same place. Measurements of probing depth from the mesial to central and distal regions of the buccal surfaces of the teeth were recorded in the respective patient’s record chart. <b>Patient-reported outcomes</b><b>Patient Questionnaire (Pain)</b> The patients were given thorough verbal information on how to use the pain scale. Feedback from the patients was asked for to make certain that they understood the nature of the scale. Instructions on how to use the VAS scale were also written on the scale forms. The patients were also assured that their VAS pain responses would not be disclosed to the treating therapist. Patient discomfort (pain) was measured using a visual analogic scale (VAS 0-10). At the end of each periodontal evaluation, all the volunteers filled out the VAS questionnaire to record the comfort experienced during the evaluation.
DOI: 10.6084/m9.figshare.9928868.v1
title: Supplementary Material for: Real-World Outcomes of Rivaroxaban Treatment in Patients with Both Nonvalvular Atrial Fibrillation and a History of Ischemic Stroke/Transient Ischemic Attack

description: <b><i>Introduction:</i></b> Prior stroke is a risk factor for stroke and bleeding during anticoagulation in patients with atrial fibrillation (AF). Although rivaroxaban is widely prescribed to reduce their risk of stroke in patients with nonvalvular AF (NVAF), the real-world evidence on rivaroxaban treatment is limited. We aimed to examine the outcomes of rivaroxaban treatment in NVAF patients with prior ischemic stroke/transient ischemic attack (TIA) by using the data of the Xarelto Post-Authorization Safety and Effectiveness Study in Japanese ­Patients with AF, a prospective, single-arm, observational study. <b><i>Methods:</i></b> The clinical outcomes of 9,578 patients who completed the 1-year follow-up were evaluated. Safety and effectiveness outcomes were compared between patients with and without prior ischemic stroke/TIA. <b><i>Results:</i></b> Among the patients, 2,153 (22.5%) had prior ischemic stroke/TIA. They were significantly older and had lower body weight, lower creatinine clearance, higher CHADS<sub>2</sub>, CHA<sub>2</sub>DS<sub>2</sub>-VASc, and modified HAS-BLED scores as compared to those without prior ischemic stroke/TIA. Any bleeding (9.1 vs. 7.2 events per 100 patient-years), major bleeding (2.3 vs. 1.6 events per 100 patient-years), and stroke/non-central nervous system systemic embolism/myocardial infarction (3.4 vs. 1.3 events per 100 patient-years) were more frequent in patients with prior ischemic stroke/TIA. Stepwise regression analysis suggested that body weight of ≤50 kg and diabetes mellitus were predictive of major bleeding in patients with prior ischemic stroke/TIA. <b><i>Conclusions:</i></b> Safety and effectiveness event rates were higher in patients with prior ischemic stroke/TIA than those without. This might be explained by differences in several risk profiles including age, body weight, renal function, and risk scores such as CHADS<sub>2</sub> between the groups. Clinicaltrials.gov: NCT01582737.
DOI: 10.17632/33n49wtnn2
title: Pressure Inflation Data for Mouse Bladders

description: Pressure vs time bladder for four mouse bladders inflated to a constant volume.
DOI: 10.17632/gmmwkfgfcj
title: LINF_140005900

description: Calponin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/2k2kkj6nxd
title: EPW: Electron–phonon coupling, transport and superconducting properties using maximally localized Wannier functions

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract The EPW (Electron-Phonon coupling using Wannier functions) software is a Fortran90 code that uses density-functional perturbation theory and maximally localized Wannier functions for computing electron–phonon couplings and related properties in solids accurately and efficiently. The EPW v4 program can be used to compute electron and phonon self-energies, linewidths, electron–phonon scattering rates, electron–phonon coupling strengths, transport spectral functions, electronic velocities, resis... Title of program: EPW Catalogue Id: AEHA_v2_0 Nature of problem Calculation of electron and phonon self-energies, linewidths, electron-phonon scattering rates, electron-phonon coupling strengths, transport spectral functions, electronic velocities, resistivity, anisotropic superconducting gaps and spectral functions within the Migdal-Eliashberg theory. Versions of this program held in the CPC repository in Mendeley Data AEHA_v1_0; EPW; 10.1016/j.cpc.2010.08.027 AEHA_v2_0; EPW; 10.1016/j.cpc.2016.07.028
DOI: 10.17632/s69rwrhprm
title: Single cell transcriptomics of organoids

description: Organoids were pooled and each cell aggregate were minced using a sterile scalpel. The dissociated cells were strained using 40 µm cell strainer and collected in a 15 ml falcon tube. The cells were kept on ice and final concentration was approximately 1000 cells/µl with > 90% cell viability. scRNA-Seq cDNA library was prepared using the chromium single cell system (10X Genomics). 10,000-16,000 cells per sample were added to a single cell master mix, following the Chromium Single Cell 3’ Reagent kits v3.1 protocol. The libraries were sequenced paired end on Illumina NovaSeq 6000 to a read depth of more than 30,000 reads per cell. All samples had sequencing yields of more than 143 million read per sample. The sequencing run was setup as a 28 cycles + 90 cycles non-symmetric run. Demultiplexing was done allowing 1 mismatch in the barcodes. Over 95.5% of bases in the barcode regions have Q30 or above and at least 93.2% of bases in the read have Q30 or above. More than 95.4% of bases in the UMI have Q30 or above. The analysis was performed with the Cell Ranger 6.1.2 software using the default parameters. Cells with extremely low number of UMI counts were filtered out. The aggregated.tar files contain the gene matrix files for performing single cell-RNAseq analysis.
DOI: 10.6084/m9.figshare.3859083.v5
title: Supplemental Figures for Longitudinal Evaluation of Anhedonia as a Mediator of Fear of Positive Evaluation and Other Depressive Symptoms

description: Supplemental figures as part of a manuscript entitled "Longitudinal Evaluation of Anhedonia as a Mediator of Fear of Positive Evaluation and Other Depressive Symptoms."
DOI: 10.17632/svtcj8g3fz
title: Chlorophyll well-to-well test data

description: Tracer and water constituents from pumping tests
DOI: 10.17632/837f4mvpmb
title: Data for reusability check-based refinement of a biophysical fishpond model

description: Data is organized in the following folders:

Folder „Measured_data”: This folder contains MS Excel files with the raw measurement data, and a file with filtered data regarding DO, N and P measurements (with Matlab DataClean).

Folder „Simulation”: 
„Calculation formulas and parameters”: This folder contains the description about the PPS model formulas (program prototypes) and parameters, highlighting also the changes, compared to the reference model.
„Native_files_and_results”: This folder contains the native input files for the PPS simulation and the simulated results. It is further broken to sub-folders that contain data files regarding:
• the normal simulations. 
• the hypothetically extended model with the consideration of cyanobacteria, as well as
• test simulations for scaling up
• results of additional validation regarding experiments from year 2014.
In the first three cases, sub-folders contains the simulation data, named according to the five experimental pilot ponds (2021CS6, 2021CS7, 2022CS2, 2022CS3 and 2022CS6). 
Sub-folders contain 14 files, that cover:
• necessary input files for the simulation, as well as 
• the simulated results.
Simulation_outputs_2014 contains the output files of 3*2 parallel experiments, made with fish oil-, plant oil-, crop-based feed.

Detailed description of the files can be found in the "Steps to reproduce" part.
DOI: 10.17632/z4pvtg87mk
title: Dataset of quality appraisal of English-language massive open online courses on Basic Life Support in terms of their compliance with cardiopulmonary resuscitation guidelines

description: The dataset contains original data of checklist-based evaluation of quality of English-language massive open online courses (MOOC) on adult Basic Life Support in terms of their compliance with cardiopulmonary resuscitation (CPR) guidelines. A web search of the MOOC was carried out in December 2021. The 72-item checklist was developed in accordance with the 2020 International Consensus on CPR [1], European Resuscitation Council (ERC) Guidelines 2021 [2] and ERC COVID-19 Guidelines [3]. The dataset file contains:
a) Worksheet tab 1 – general characteristics of the MOOC;
b) Worksheet tab 2 – results of the checklist-based evaluation of conformance of the MOOC educational content with the guidelines; and
c) Worksheet tab 3 – a list of abbreviations.

References
1. Olasveengen TM, Mancini ME, Perkins GD, Avis S, Brooks S, Castrén M, et al. Adult Basic Life Support: 2020 International Consensus on Cardiopulmonary Resuscitation and Emergency Cardiovascular Care Science With Treatment Recommendations. Circulation. 2020;142(16_suppl_1):S41-S91. doi: 10.1161/CIR.0000000000000892
2. Olasveengen TM, Semeraro F, Ristagno G, Castren M, Handley A, Kuzovlev A, et al. European Resuscitation Council Guidelines 2021: Basic Life Support. Resuscitation. 2021;161:98-114. doi: 10.1016/j.resuscitation.2021.02.009
3. Nolan JP, Monsieurs KG, Bossaert L, Böttiger BW, Greif R, Lott C, et al. European Resuscitation Council COVID-19 guidelines executive summary. Resuscitation. 2020;153:45-55. doi: 10.1016/j.resuscitation.2020.06.001
DOI: 10.6084/m9.figshare.5241412.v1
title: Erratum: Intussusceptive Angiogenesis: A Biologically Relevant Form of Angiogenesis

description: Angiogenesis, i.e. the development and growth of blood vessels, is a major topic of research as it plays an important role in normal development and in various pathologies. Recent evidence revealed the existence of different mechanisms of blood vessel growth, including sprouting and intussusceptive angiogenesis, vascular mimicry, and blood vessel cooption. The latter two have only been observed in tumor growth, but sprouting and intussusceptive angiogenesis also occur in healthy, physiologically growing tissues. Despite this variety of angiogenic mechanisms, most of the current research is focused on the mechanism of sprouting angiogenesis because this mechanism was first described and because most existing experimental models are related to sprouting angiogenesis. Consequently, the mechanism of intussusceptive angiogenesis is often overlooked in angiogenesis research. Here, the mechanism of intussusceptive angiogenesis is reviewed and the current techniques and models for investigating intussusceptive angiogenesis are summarized. In addition, other mechanisms of vascular growth are briefly reviewed.
DOI: 10.6084/m9.figshare.7611518.v1
title: DPV of porphyrin 3 from 0V to 1.5V

description: differential pulse voltammetry of porphyrin 3 from 0V to 1.5V, under N<sub>2</sub> atmosphere
DOI: 10.6084/m9.figshare.7889783.v1
title: gVCF_HG01308

description: 1000 Genomes gVCF mapped to hs37d5 for HG01308. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/f24z4pkfmn
title: micro-lattice-based heat sinks

description: The data presented here shows the results of numerical simulations on micro-lattice based heat sinks. Heat sinks from two different topologies of lattice structures i.e. Pyramidal and Tetrahedral are constructed by varying their L/D ratios. Fluid flow and heat transfer simulations are carried out for laminar Reynolds number in the range of 300-700 and the results are analyzed in terms of base plate temperature, convective heat transfer coefficient, friction factor, pressure drop per unit length, pore Nusselt number, Rea goodness factor and Thermal efficiency index. The result of the numerical simulations are compared with the experimental studies in the literature and the conclusions are drawn.
DOI: 10.17632/gzxrbk8nsp
title: Data for: Ferromagnetic and FMR properties of the YIG/TiO2/PZT structures obtained by ion-beam sputtering

description: Fig. 1. Cross-section of the original ceramic PbZr0.45Ti0.55O3 sample. Fig. 2. Typical view of the YIG (2 µm) /TiO2 (0.2 µm) /PZT (400 µm) sample in the cross-sectional area (a), as well as a YIG surface part (b), made on a smaller scale. Fig. 3. X-ray diffraction pattern of the Y3Fe5O12 (2 m) /TiO2 (0.2 m) /PZT (400 m) heterostructure. X-rays are directed to the Y3Fe5O12 layer. Fig. 4. AFM profile (a) along the horizontal line at (b). AFM (b) and MFM (c) images of the surface of the YIG/TiO2/PZT structure in the saturation state. The color scale on the right in the figure 4 c is plotted in relative units. Fig. 5. Magnetic-field dependence of the YIG (2 μm) /TiO2 (0.2 μm) /PZT (400 μm) structure in a parallel (1) and perpendicular (2) configuration of the external magnetic field and the plane of the layer. Measurements were taken at 300 K. The insert is the same on a larger scale. Fig. 6. FMR curves of the YIG (2 μm) /TiO2 (0.2 μm) /PZT (400 μm) structure samples in a resonant magnetic field parallel (a) and perpendicular (b) to the plane of the layer. Measurements were taken of four parts of the same sample. H is the resonance absorption line width.
DOI: 10.6084/m9.figshare.5718655.v1
title: Karyotype analysis in Bignonieae (Bignoniaceae): chromosome numbers and heterochromatin

description: ABSTRACT Chromosome numbers and heterochromatin banding pattern variability have been shown to be useful for taxonomic and evolutionary studies of different plant taxa. Bignonieae is the largest tribe of Bignoniaceae, composed mostly by woody climber species whose taxonomies are quite complicated. We reviewed and added new data concerning chromosome numbers in Bignonieae and performed the first analyses of heterochromatin banding patterns in that tribe based on the fluorochromes chromomycin A3 (CMA) and 4’-6-diamidino-2-phenylindole (DAPI). We confirmed the predominant diploid number 2n = 40, as well as variations reported in the literature (dysploidy in Mansoa [2n = 38] and polyploidy in Dolichandra ungis-cati [2n = 80] and Pyrostegia venusta [2n = 80]). We also found a new cytotype for the genus Anemopaegma (Anemopaegma citrinum, 2n = 60) and provide the first chromosome counts for five species (Adenocalymma divaricatum, Amphilophium scabriusculum, Fridericia limae, F. subverticillata, and Xylophragma myrianthum). Heterochromatin analyses revealed only GC-rich regions, with six different arrangements of those bands. The A-type (one large and distal telomeric band) were the most common, although the presence and combinations of the other types appear to be the most promising for taxonomic studies.
DOI: 10.17632/jxyznh57kz
title: Data for: Relative entropy and minimum-variance pricing kernel in asset pricing model evaluation

description: Using all stocks listed in the Australian Securities Exchange and macroeconomic data for Australia, the dataset comprises the following series: 1. Monthly returns for 20 size-price to cash flow portfolios, following the Fama and French (1993) methodology. (Raw data source: Datastream database) 2. Monthly returns for 25 size-book to market equity portfolios, following the Fama and French (1993) methodology. (Raw data source: Datastream database) 3. Monthly returns for 41 industry portfolios. (Raw data source: Datastream database) 4. Private final consumption expenditure, in national currency and constant prices, non-seasonally adjusted, for Australia. (Raw data source: OECD) 5. Fama and French (1993) factors (RM, SMB and HML), following the Fama and French (1993) methodology. (Raw data source: Datastream database) 6. Fama and French (2015) factors (RM, SMB, HML, RMW, and CMA), following the Fama and French (2015) methodology. (Raw data source: Datastream database) 7. Three-month interest rate of the Treasury Bill for Australia. (Raw data source: OECD) We have produced all return series using the following data from Datastream: (i) total return index (RI series), (ii) market value (MV series), (iii) market-to-book equity (PTBV series), (iv) price-to-cash flow ratio (PC series), (v) primary SIC codes, and (vi) tax rate (WC08346 series). We use the rules suggested by Griffin, Kelly, & Nardari (2010) for excluding non-common equity securities from Datastream data. REFERENCES: Fama, E. F. and French, K. R. (1993). Common risk factors in the returns on stocks and bonds. Journal of Financial Economics, 33, 3–56. Fama, E. F. and French, K. R. (2015). A five-factor asset pricing model. Journal of Financial Economics, 116, 1–22. Griffin, J. M., Kelly, P., and Nardari, F. (2010). Do market efficiency measures yield correct inferences? A comparison of developed and emerging markets. Review of Financial Studies, 23, 3225–3277.
DOI: 10.6084/m9.figshare.19721731.v1
title: Supplementary Material for: Mode of Delivery and Incidence of Bronchopulmonary Dysplasia: Results from the Population-Based EPICE Cohort

description: <b><i>Introduction:</i></b> Bronchopulmonary dysplasia (BPD) represents a tremendous disease burden following preterm birth. The strong association between compromised gas exchange after birth and BPD demands particular focus on the perinatal period. The mode of delivery can impact on lung fluid clearance and microbial colonization, but its impact on BPD and potential trade-off effects between death and BPD are not established. <b><i>Methods:</i></b> A total of 7,435 live births (24+0 to 31+6 weeks postmenstrual age) in 19 regions of 11 European countries were included. Principal outcomes were death and BPD at 36 weeks. We estimated unadjusted and adjusted associations with mode of delivery using multilevel logistic regression to account for clustering within units and regions. Sensitivity analyses examined effects, taking into consideration regional variations in C-section rates. <b><i>Results:</i></b> Compared to vaginal delivery, delivery by C-section was not associated with the incidence of BPD (OR 0.92, 95% CI: 0.68–1.25) or the composite outcome of death or BPD (OR 0.94, 95% CI: 0.74–1.19) after adjustment for perinatal and neonatal risk factors in the total cohort and in pregnancies for whom a vaginal delivery could be considered. Sensitivity analyses among singletons, infants in cephalic presentation, and infants of ≥26+0 weeks of gestation did not alter the results for BPD, severe BPD, and death or BPD, even in regions with a high C-section rate. <b><i>Conclusions:</i></b> In our population-based cohort study, the mode of delivery was not associated with the incidence of BPD. The intention to reduce BPD does not justify a C-section in pregnancies where a vaginal delivery can be considered.
DOI: 10.6084/m9.figshare.7514879.v1
title: The petrogenesis of tholeiitic diabases in eastern Parnaíba Basin: evidence for geochemical heterogeneities in the subcontinental lithospheric mantle in NE Brazil

description: ABSTRACT: The sedimentary rocks within the Paleozoic Parnaiba basin in NE Brazil were intruded by voluminous tholeiitic diabase sills and covered by coeval basaltic flows. This paper presents lithogeochemical data of borehole samples obtained from wells located in the eastern portion of the Parnaiba basin. The diabases are subalkaline tholeiitc rocks comprising three high-TiO2 and three low-TiO2 suites that are unrelated by differentiation processes. Fractional crystallization of olivine and augite was the predominantly evolutionary processes within individual high- and low-TiO2 suites as depicted by trace element geochemical modelling, exception being made for one low-TiO2 suite that evolved by AFC. Parental compositions for both low- and high-TiO2 suites are related with variably enriched, spinel harzburgitic sources likely to represent the heterogeneous subcontinental lithospheric mantle underneath the sedimentary basin. The geochemical provinciality of the Parnaiba tholeiitic magmatism seems unrelated with the Transbrasiliano Lineament but may be due to lithospheric mantle amalgamation and remobilization occurred during previous tectonic events.