cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/thrmxs
title: Water level data recorded in the Oir watershed (Normandy-France)

description: Water level data recorded in the Oir watershed are acquired in a sector at the outlet of the Ruisseau de la Roche (tributary of the Oir) for the Environmental Research Observatory (ERO) on Diadromous Fish in Coastal rivers (DiaPFC). The DiaPFC ERO is a research infrastructure focused on studying the evolution of diadromous fish populations under the influence of environmental and anthropogenic changes (mainly agriculture and climate). The Oir is a tributary of the Sélune, a coastal river that flows into the Bay of Mont-Saint-Michel. The river stretches 13.5 km from west to east, draining a catchment area of 85.4 km². Average flow is 1.09 m3/s. Agriculture, particularly livestock farming, is the main human activity in this watershed. The Oir is colonized by several species of migratory fish: Atlantic salmon, European eel, sea and river lamprey, sea trout, etc. Other series of data are recorded for this same sector: Water temperature : https://doi.org/10.15454/YFY4AQ Rainfall : https://doi.org/10.57745/V9POHR. Physico-chemistry (conductivity, pH, nitrate, phosphorus, etc. ) : https://doi.org/10.15454/SGO7EU Trout, eel and salmon populations are monitored by electrofishing, and individual pit-tag monitoring is carried out on these species. Water levels are recorded at the following geographical position: latitude: 48.63824; longitude: -1.188991. The sensor is placed in a channel with a known trapezoidal cross-section for flow calculation. Data have been recorded since 25/10/2010. Equipment used : from 10/25/2010 to 01/20/2016: HOBO datalogger U20 WATER LEVEL probe (10-minute frequency) from 20/01/2016 to 23/06/2023: OTT PLS probe (10-minute frequency)
DOI: 10.57745/tjrsvh
title: Temporal monitoring of soil macroinvertebrate communities at ACBB-Mons trial

description: The study was conducted at the long-term experiment SOERE ACBB (Systèmes d'Observation et d'Expérimentation pour la Recherche en Environnement Agrosystèmes Cycles Biogéochimiques et Biodiversité) “arable crops”, located at Estrées-Mons, Northern France (49.873 N, 3.032 E). The experiment was established on an 8 ha field, which had been cropped with annual crops for many years before the onset of the experiment. In 2010, after 2 years of complete homogenization with the same crop (wheat in 2008, then barley in 2009) and same conventional management, a six-year rotation was initiated, composed of spring pea (Pisum sativum, L.), winter wheat (Triticum aestivum, L.), rapeseed (Brassica napus, L.), spring barley (Hordeum vulgare, L.), maize (Zea mays, L.) and winter wheat. The experiment started in March 2010 (called T0) at pea sowing and six treatments were set up with 4 replicates within a randomized block design. Four of these treatments were investigated in the present study: CONV (conventional) with full-inversion ploughing, reference N fertilization rate and crop residues recycled to soil; RT (reduced tillage) i.e. same treatment but with shallow tillage; RT-RR (reduced tillage and residues removal) i.e. shallow tillage, reference N fertilization and crop residues removal; RN (reduced N fertilization) i.e. full-inversion ploughing, N fertilization rate reduced by ∼70% and crop residues recycled. In the RT-RR treatment, crop residues were removed after harvest using a hay baler after cereal crops and a silage harvester for maize. In the other treatments, crop residues were incorporated in soil using disk ploughing in the RT treatment and mouldboard ploughing in the CONV and RN treatments. Soil macroinvertebrates were monitored from 2010 to 2015 by a combination of soil hand sorting and pitfall trapping.
DOI: 10.57745/tph8dd
title: Cartographie des scolytes par la méthode fordead - Octobre 2022

description: Ce dataset contient les résultats de la détection des anomalies dues aux scolytes par la méthode fordead sur les régions Grand-Est, Bourgogne-Franche-Comté et les trois départements Ain, Savoie et Haute-Savoie à partir des données Sentinel-2 disponibles en octobre 2022. Le dataset contient un fichier readme donne des détails sur les différentes données, ainsi qu'un fichier pdf "analyse_surface" avec quelques graphiques à partir des résultats.
DOI: 10.57745/s11krp
title: Data used in the article "Minimum leaf conductance during drought: unravelling its variability and impact on plant survival"

description: Paper accepted 17/02/2025
DOI: 10.57745/sn9chz
title: Data for “International Climate Aid and Trade”

description: “International Climate Aid and Trade” Journal of Environmental Economics and Management – 102748 – 2022 Bayramoglu, Jacques, Nedoncelle, Neumann-Noel Foreign aid allocation by donor countries to developing economies is known to be motivated by the donor country’s bilateral trade interests. Does this apply also to bilateral climate aid? In this paper, we combine theoretical and empirical analyses to investigate how bilateral trade affects donor countries’ allocations of bilateral climate aid. Our theoretical analysis develops a simple model to support our hypothesis that bilateral trade has a positive impact on climate aid transfers. The model highlights the terms-of-trade and positive income effects of climate aid, and predicts a positive relationship between donor countries’ exports to and imports from recipient countries and their climate aid transfers. The empirical analysis is based on bilateral climate aid data for 2002 to 2017. We employ fixed effects and instrumental variable-2 stage least square estimations (IV-2SLS) with a shift-share instrument to overcome the endogeneity of trade. Our empirical results show that donors’ exports have a significant, robust, positive effect on climate aid transfers.
DOI: 10.57745/tdw4kn
title: Silver photochemical reactivity under electronic irradiation of zinc-phosphate and sodium gallo-phosphate glasses

description: Data set from Silver Photochemical reactivity under electronic irradiation of Zinc-Phosphate and Sodium Gallo-Phosphate glasses - Publication : Alassani F., Desmoulin J.-C., Cavani O., Petit Y., Cardinal T. and Ollier N. Silver photochemical reactivity under electronic irradiation of zinc-phosphate and sodium gallo-phosphate glasses. Journal of Non-Crystalline Solids 2023 vol.600, p.122009 (10 p.). HAL : Hal-03851869 Dataset production context : In the present work, the effect of electron irradiations on silver-containing phosphate glasses using a 2.5 MeV electron beam has been explored by Electron Spin Resonance (ESR) and luminescence spectroscopy. The process involved in the interaction of electron beam with both the silver-containing and silver-free phosphate glass matrix and the formation of colored centers is discussed. This allowed an understanding of the initial phenomena of electron deposition and charge trapping that supports the photosensitivity of these glasses by identifying the point defects and the Ag species. The effect of the silver concentration and the structure of the glass depending on the integrated dose have been investigated. The in-situ cathodoluminescence measurements give additional valuable information about the cascade of chemical reactions in the formation of new silver species, namely from the initial silver ions to the molecular silver clusters. For more information see the article.
DOI: 10.57745/tkpdbv
title: Assessment of bicycle experimental objective handling quality indicators

description: Data and code (Python) used to assess experimental objective handling quality indicators in the associated paper.
DOI: 10.57745/toujg5
title: The role of Trees of Fragmenting Granules (TFG) in the formation of the solar supergranulation: a comparison between the MHD simulation and three Hinode observations

description: We present an exceptional scientific dataset allowing to investigate the structure and evolution of the interior of the solar supergranulation cells. Trees of Fragmenting Granules (TFG) and associated horizontal flows were evidenced from a 27 H MHD numerical simulation and an 3 sequences from Hinode (JAXA/NASA) observations, respectively of 48 H, 25 H and 24 H duration, at disk centre (2007, 2013 and 2014). The simulation and observations are in agreement and show that the TFG generate horizontal flows (less than 1 km/s) with lifetime of a few hours over a scale of 10 arcsec (the mesogranulation pattern). These flows act on the diffusion of the intra-network magnetic elements. We introduced corks in the flow and they migrate towards the cell boundaries. Hence, the TFG appear as one of the major agent involved in supergranular cell formation and evolution. The dataset contains FITS files for scientific processing; our results are illustrated by associated MP4 movies.
DOI: 10.57745/tygzst
title: FSOV DéBAT - RNA-seq related datasets

description: RNA-seq data (TPM) from Salmon analysis for high coverage samples (36 samples) and Low coverage samples (450 wheat accessions)
DOI: 10.57745/upqjkr
title: TransAAP_results

description: TSV file containing the membrane transporter prediction of 63 bacterial genomes from cheese. Prediction was done with the software TransAAP on January 2024. For details on the software, see the related article: https://doi.org/10.1099/mgen.0.000927
DOI: 10.57745/sy7nyh
title: Simulation data with the demo-genetic forest model Luberon2: thinning and genetic adaptation to drought in Douglas-fir

description: The data are linked to a research article published in Evolutionary Applications (2024) by Victor Fririon, Hendrik Davi, Sylvie Oddou-Muratorio, Gauthier Ligot and François Lefèvre (https://doi.org/10.1111/eva.70051). Any reuse of the data must cite the research article: see full reference for citation in the metadata of this archive. The research investigates how thinning can mitigate immediate impacts of drought on tree populations or enhance the selection of resistant genotypes for long-term benefits. The data contain a full factorial design simulation plan with the demo-genetic forest model Luberon2 combining 3 stochastic drought stress regimes, 3 levels of phenotypic variation and 4 silvicultural scenarios resulting in 36 scenarios that were replicated 10 times, i.e. leading to 360 simulation runs in total. The archive includes all necessary elements to reproduce the research: (i) a stand alone version of the model; (ii) the input and output files of the simulations presented in the in the study; (iii) the R scripts used to analyze the simulation outputs and reproduce the figures as they appear in the study manuscript.
DOI: 10.57745/sytagt
title: RPG complété 2021 Région Poitou-Charentes

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région Poitou-Charentes (16, 17, 79, 86). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/tuihkt
title: Dataset for "Agroclimatic indicators with multivariate bias correction methods"

description: This dataset is part of the COMPROMISE project funded by the MetaProgram Adaptation of Agriculture and Forest to Climate Change (AAFCC) of the French National Research Institute for Agriculture, Food & Environment (INRAE). The dataset contains agro-climatic indicators computed in three regions using (i) the SAFRAN reanalysis data and (ii) the climate coupled model IPSL-CM6A-LR developped at the Institut Pierre-Simon Laplace, with (and without) bias correction methods: one univariate correction (CDF-t) and two multivariate bias correction methods (R2D2 and dOTC). The agroclimatic indicators are: phenological stages (PHENO), reference evapo-transpiration (ET0), soil water balance (WB), and forest weather index (FWI). All details regarding the models, methods, indicators and bias correction methods are presented in full detail in the technical report: D. Allard, B. François, I. Garcia de Cortazar-Atauri and M. Vrac (2024) "Multivariate bias corrections of climate simulations seen through impact models: results of the COMPROMISE project" available at https://hal.inrae.fr/hal-04227826.
DOI: 10.57745/typr6m
title: The Rapid Scaling Tool

description: This dataset contains the excel tool and the user guide for the Rapid Scaling Tool.
DOI: 10.57745/rgnxxu
title: Data on riparian plant communities on gravel bars in the Rhône, Drôme and Ain rivers

description: Data were collected in five river reaches: unregulated reach with active bedload transport (Drôme River, DRM), regulated reach with active bedload transport (Ain River, AIN), regulated reach with stabilized baseflow and active bedload transport (Rhône River, Miribel-Jonage bypassed reach, MRJ), regulated reach with stabilized baseflow and inactive bedload transport, with riparian vegetation management by brush clearing (Rhône River, Pierre-Bénite bypassed reach, PBN) or plowing (Rhône River, Donzère-Mondragon bypassed reach, DZM). For each river reach, two gravel bars were sampled during the summers of 2017 and 2018. On each gravel bar, the vegetation was surveyed within twelve 5 x 5 m quadrats (25 m²) positioned along three transects (four quadrats per transect) oriented perpendicularly to the river.
DOI: 10.57745/sbfjyl
title: SicpaOpenData for Java

description: The Sicpa_OpenData libraries allow to facilitate the publication of data to the INRAE dataverse in a transparent way 1/ by simplifying the creation of the metadata document from the data already present in the information systems, 2/ by simplifying the use of dataverse.org APIs. Available in the form of a JAR, the SicpaOpenData for Java library can be used from all developments using JDK environments
DOI: 10.57745/ss15gm
title: Long term monitoring of near surface soil temperature in the Mercantour National Park

description: Monitoring of near-surface soil temperature in seasonaly snow-covered, mountain ecosystems located in the Mercantour National Park. Data are part of several research projects and monitoring programs examining the impact of climate change on snow cover dynamics, microclimate, species distribution and ecosystem functioning. Data include a GPS position, a date and time in UTC and a near-surface soil temperature (in °C) measured at 5 cm belowground using stand-alone temperature data logger.
DOI: 10.57745/tdtu3i
title: Data associated to the paper "Analyzing resilience of European beech tree to recurrent extreme drought events through ring growth, wood anatomy and stable isotopes "

description: This dataset is provided as supplementary material of the following article: Zhang G, Breda N, Steil N, Gaertner PA, Levillain J, Ruelle J, Massonnet C. (2025) Analyzing resilience of European beech tree to recurrent extreme drought events through ring growth, wood anatomy and stable isotopes. Journal of Ecology. The study investigates the physiological processes linked to water and carbon constraints involved in the resilience of beech cambial growth to the recent drought event in Central Europe. The dataset includes a dendrometric description of the 56 trees and annual soil water deficit data of 4 stands in the NorthEastern France where the study was conducted. We also provide tree ring data from 2013 to 2022 period (ring width, anatomical parameters of vessels, stable isotope 13C and 18O and water use efficiency claculation). Long term data of tree ring width and basal area increment for the 56 trees are also provided.
DOI: 10.57745/tzvbb8
title: Dataset of polar lipids and proteins in milk fat globule membranes linked to spontaneous lipolysis in cow’s milk

description: Results from the statistical analysis of zootehnics, proteomics and lipidomics data from dairy cows milks with high or low lipolysis level
DOI: 10.57745/u6jecd
title: Multiple deletions of candidate effector genes lead to the breakdown of partial grapevine resistance to downy mildew

description: Grapevine downy mildew, caused by the oomycete Plasmopara viticola, is a globally destructive disease that particularly affect the Eurasian wine grape V. vinifera. While genetically resis- tant varieties are becoming more accessible, populations of P. viticola are demonstrating rapid adaptability, successfully over- coming these resistances. Here we aimed to identify the aviru- lence genes involved in the interaction with the Rpv3.1-mediated resistance in grapevine. We sequenced the full genome of 136 P. viticola strains sampled in a natural population of Bordeaux (France) and characterized their development on both resis- tant and sensitive cultivars. The genome-wide association study allowed the identification of a genomic region associated with the breakdown of Rpv3.1 grapevine resistance (avrRpv3.1 lo- cus). A diploid-aware reassembly of the P. viticola INRA-Pv221 genome allowed to detect structural variations in this locus, in- cluding a major 30 Kbp deletion. At the avrRpv3.1 locus, vir- ulent P. viticola strains presented deletion on both haplotypes indicating that avirulence is recessive. The deletion involves two closely-related genes that encode proteins containing 800- 900 amino acids with a signal peptide. The structure of the predicted proteins contains repeats of the LWY-fold structural modules, typical of oomycete effectors. Moreover, when these proteins were transiently expressed, they induced cell death in grapevines carrying Rpv3.1 resistance, confirming their aviru- lence nature. The first description of candidate effectors of P. viticola involved in the interaction with resistance gene provides valuable insights into the genetic mechanisms that enable P. viti- cola to adapt to grapevine resistance, laying a foundation for developing strategies to manage this damaging crop pathogen.
DOI: 10.57745/qcvyg3
title: Long-term monitoring of near-surface soil temperature in mountain ecosystems of the LTSER Lautaret-Oisans

description: Monitoring of near-surface soil temperature in seasonaly snow-covered, mountain ecosystems located in the Lautaret-Galibier area of the French Alps. Data are part of a long-term monitoring programs examining the impact of climate change on snow cover dynamics, microclimate, species distribution and ecosystem functioning. Data include a GPS position, a date and time in UTC and a near-surface soil temperature (in °C) measured at 5 cm belowground using stand-alone temperature data logger.
DOI: 10.57745/ruqljl
title: Draix-Bleone Observatory spatial data: catchment boundaries, instrument locations and DEM

description: This dataset contains spatial information for Draix-Bleone Observatory, including catchment boundaries for the Laval, Moulin, Brusquet, Roubine, Francon, Bouinenc and Galabre catchments, instrument locations, and high-resolution topographic data (DEM) for the Laval, Moulin, Roubine, and Brusquet catchments.
DOI: 10.57745/rvdckl
title: RPG complété 2018 département 27

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 27. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/rzahfb
title: Clustering of telomeric motif-1 occurences and comparison with A/B subgenomes

description: All motif-1 occurrences of the 3 species (Minc, Mjav, Mare) were clustered at 99.9% identity using CD-HIT and clustering results were cross-referenced with A/B subgenomes assignments. Sheet 1: The 52 clusters with information of the species and contig of origin as well as positions on the contigs. Sheet 2: Distribution of Minc motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 3: Sheet 2: Distribution of Mare motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 4: Distribution of Mjav motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 5: Cross-species motif-1 occurrences across the clusters with information of A/B subgenome of origin. Sheet 6: Distribution of species per cluster
DOI: 10.57745/s72cql
title: Relevés de températures de l'eau en continu de l'expérimentation "Macrodurée"

description: Relevés de températures de l'eau en continu de l'expérimentation "Macrodurée" sur la plateforme expérimentale de l'U3E à Rennes. Cette expérimentation permettra d'étudier sur le long terme, la réponse structurelle, fonctionnelle et évolutive d’un écosystème face à des perturbations multiples. Cet objectif répond à une préoccupation sociétale majeure concernant l’effet de l’introduction de nouvelles espèces dans les milieux, et en particulier l’effet d’introductions multiples . Ainsi on été introduits dans les mésocosmes: -des macroinvertébrés, des macrophytes, et du zoo- et phytoplancton (début 2020), via la mise en place de sédiments issus des étangs du Rheu de l'U3E. -des limnées 11x 7 souches / mésocosme (début 2020; d’autres introductions prévues la même année) - 40 individus de Procambarus clarkii / mésocosme (2021) Des enregistreurs autonomes sont situés dans 4 mésocosmes aquatiques de 11m².
DOI: 10.57745/smmqxt
title: Tourists preferences for environmental measures in the region of Vittel

description: The data includes a questionnaire distributed in touristic places (hotels etc.) around Vittel or by QR code to an online survey between July 2023 and September 2023. The aim of the survey is to investigate tourists' knowledge of agri-environmental measures implemented on the Vittel impluvium (hedgerows plantation, renaturation of water courses etc.). This survey targeted this tourist population. It includes 487 questionnaires and 19 questions.
DOI: 10.57745/thuqe3
title: Corrélations rendement-protéines chez le blé tendre

description: Corrélations rendement-protéines chez le blé tendre
DOI: 10.57745/traeeg
title: supplemental data for "Genes overexpressed and specific for the chicken testis" publication

description: supplemental data for "Genes overexpressed and specific for the chicken testis" publication: 7 Tables (Excel) and 8 Figures (powerpoint) the data are described in a submitted publication
DOI: 10.57745/uaplhm
title: Bonnes pratiques Dataverse

description: Recensement des bonnes pratiques et conseil de gestion pour les dataverses institutionnels
DOI: 10.57745/uuq26k
title: Supplementary Material for Ph.D. Thesis: Deep Supervision of the Vocal Tract Shape for Articulatory Synthesis of Speech

description: Supplementary Material for Ph.D. Thesis: Deep Supervision of the Vocal Tract Shape for Articulatory Synthesis of Speech Videos demonstrating the methods proposed in the thesis relative to the segmentation of vocal tract articulations in RT-MRI using deep learning and the synthesis of vocal tract articulations for a sequence of phonemes using the various methods proposed in the theses
DOI: 10.57745/rkpxmp
title: Pourcentage de surfaces perdues agricoles au fil de l'extension du contour urbain sur une sélection de villes en Vaucluse

description: Data Agriculture -&gt; Corrine Land Cover 2018 catégorie 2 et Recensement parcellaire graphique (RPG) 2018 Data Urbain -&gt; Bdtopo 2018, contour urbain créé par procédure dilatation érosion en postgis sous différent seuil ('40(dilatation)_40 (erosion) et ','40_20','40_40','60_20','60_40','60_60','80_20','80_40','80_60','80_80') A filtrer sous Qgis avec la variable Seuil ** Villes sélectionnées dans le Vaucluse APT AVIGNON BOLLENE CARPENTRAS CAVAILLON ENTRAIGUES-SUR-LA-SORGUE LE PONTET LE THOR L'ISLE-SUR-LA-SORGUE MONTEUX MORIERES-LES-AVIGNON ORANGE PERNES-LES-FONTAINES PERTUIS SORGUES VAISON-LA-ROMAINE VALREAS VEDENE