cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vsxvgc4rwy
title: Data for: Clustering Benchmark Datasets Exploiting the Fundamental Clustering Problems

description: This directory contains the Fundamental Clustering Challenges. It contains different data sets with a given classification. The data sets are rather simple and low in dimensionality. Each dataset adresses a certain problem for clustering. Standard clustering algorithms such as single linkage, ward and k-means are not able to cluster all of the data sets correctly. These datasets may serve as a minimal test for new invented cluster algorithms. Every new invented algorithm should at least cluster the FCPS correctly. Datasets of dimensionality 3 or higher can also serve to validate dimensionality reduction methods of the type which attempts to visualize information by means of projections that are restricted to visualizing data in a two-dimensional space while preserving their structure. Conventional projection methods, like MDS or PCA, are not able to visualize the cluster structures correctly. All files are ASCII text files. Colums are separated by TAB. Headers are included. *.lrn files contain the data including a unique key for each case, *.cls contain keys and class labels. Each class is indicated by a positive number. *.lrn the data including a unique key for each case *.cls contains key and class. Each class is indicated ba a positive number. Data can be opend with https://github.com/aultsch/DataIO. with a *.csv reader, or using the R package FCPS on CRAN: https://CRAN.R-project.org/package=FCPS
DOI: 10.17632/x7j5ztp7gf
title: Supporting information for "1.38 Ga four-layer tuff marker horizon in North China black shales as a chronostratigraphic boundary for the pre-Ediacaran geological time scale"

description: This supporting information includes detailed descriptions of field occurrences and samples, analytical methods for U–Pb CA–ID–TIMS geochronology (Text S1), field photographs showing the four-layer tuff marker horizon within black shales of the Xiamaling Formation in the Yanliao Basin, North China Craton (Figures S1 and S2), cross sections showing sample locations of tuffaceous ash beds within black shales of the Xiamaling Formation at Zhaojiashan and Beilu sections (Figure S3), summary of the previously and newly obtained zircon U-Pb isotopic data for volcanic tuff units from the Xiamaling Formation, North China Craton (Tables S1), and U-Pb CA-ID-TIMS isotopic data for volcanic tuff units from the Xiamaling Formation, North China Craton (Tables S2).
DOI: 10.17632/yck5xy22w2
title: High Contribution of Anthropogenic Combustion Sources to Atmospheric Inorganic Reactive Nitrogen in South China Evidenced by Isotopes

description: Atmospheric inorganic nitrogen concentrations and stable nitrogen isotopes in South China
DOI: 10.6084/m9.figshare.21967265.v1
title: NICHE: A Curated Dataset of Engineered Machine Learning Projects in Python

description: Machine learning (ML) has gained much attention and has been incorporated into our daily lives. While there are numerous publicly available ML projects on open source platforms such as GitHub, there have been limited attempts in filtering those projects to curate ML projects of high quality. The limited availability of such high-quality dataset poses an obstacle to understanding ML projects. To help clear this obstacle, we present NICHE, a manually labelled dataset consisting of 572 ML projects. Based on evidences of good software engineering practices, we label 441 of these projects as engineered and 131 as non-engineered. In this repository we provide "NICHE.csv" file that contains the list of the project names along with their labels, descriptive information for every dimension, and several basic statistics, such as the number of stars and commits. This dataset can help researchers understand the practices that are followed in high-quality ML projects. It can also be used as a benchmark for classifiers designed to identify engineered ML projects. <br> GitHub page: https://github.com/soarsmu/NICHE
DOI: 10.6084/m9.figshare.28000082.v1
title: A dataset for the paper, entitled as "Native seed density and nonnative invasive species arrival order independently affect biotic resistance of native communities to invasion" in Journal of Applied Ecology

description: A dataset for the paper, entitled as "Native seed density and nonnative invasive species arrival order independently affect biotic resistance of native communities to invasion" in Journal of Applied Ecology
DOI: 10.6084/m9.figshare.28730099.v2
title: DataBaliMask3D

description: Dataset for 3D Completion
DOI: 10.17632/gdwm3m9xjz
title: Global Business Networks

description: This repository provides the data and code required to replicate the tables and figures presented in the paper "Global Business Networks."
DOI: 10.6084/m9.figshare.16447278.v1
title: scanpy-pbmc3k.h5ad

description: H5AD file created by following the Scanpy PBMC3K tutorial
DOI: 10.6084/m9.figshare.20014414.v1
title: Assessment of the light intensity of otoscopes utilized in teaching hospitals

description: ABSTRACT INTRODUCTION: To attain an accurate otoscopic diagnosis, a functioning device with adequate capacity must be used. OBJECTIVE: Evaluate the light intensity of otoscopes, comparing it utilizing the batteries present at the moment of calibration and after new batteries were supplied. METHODS: Cross-sectional study of a historical cohort, which assessed 38 otoscopes, measuring the light intensity with the batteries present at the moment of assessment compared to the intensity with new batteries, as well as charge of the test batteries and the new batteries. RESULTS: The mean of the sum of new batteries' charge was 3.19 V, and of the test batteries was 2.70 V, representing a decrease of 18.02% in charge. The mean luminosity with the new batteries was 366.89 lumens, whereas in the test batteries it was 188.32 lumens, representing a decrease of 83.75% in the light intensity. Student's t-test was applied for data comparison, showing a statistical difference between the light intensity with the original batteries and the new batteries (p = 0.0001; CI = 0.95). CONCLUSION: There was a statistically significant difference between the proportions of light intensity in the otoscopes. A small variation in battery charge results in a great variation in light.
DOI: 10.6084/m9.figshare.26139496.v1
title: Data for Benchmarking structure-based 3D generative models with GenBench3D

description: This folder contains all data required to reproduce the work "Benchmarking structure-based 3D generative models with GenBench3D: ligand conformation quality matters".
DOI: 10.6084/m9.figshare.9108602.v1
title: Transaction Log Data for Analyzing the Abnormal behaviors in The Financial Domain

description: In recent years, we have been exploring computational models to classify bank accounts in combating illegal pyramid selling. The department of economic investigation provides us with plenty of transaction data of real bank accounts. An account contains a lot of transaction records, each of which includes bilateral transaction accounts, timestamp, amount of money and transaction direction, etc. We sample out the transaction records belonging to 10145 bank accounts to form out dataset for training our model. There are 9270 normal accounts and 875 accounts involving a MLM organization respectively. The number of transaction records generated by the normal accounts run up to 6732730 and the fraud records created by MLM members amount to 275804 rows. These MLM members are manually annotated as ``illegal'' by economic investigators. Before training the models, we filtered out some noisy data, i.e. deleting the duplicate records, incomplete records and the records whose transaction amounts no more than 50. Therefore, 1371914 records is filtered out from the set of normal accounts' transaction records and 91341 records created by illegal accounts are deleted. In general, more than 5 million transaction records are used after denoising.
DOI: 10.17632/5s9ppyydff
title: PRESERVING AND PROMOTING INDIA'S INDIGENOUS KNOWLEDGE SYSTEMS: A COMPREHENSIVE FRAMEWORK FOR EDUCATION, RESEARCH, AND CULTURAL HERITAGE ADVANCEMENT

description: Abstract: The primary objective of the Indian knowledge system is to provide assistance and enable the pursuit of additional research endeavours in order to address and resolve present-day social challenges. IKS draws its foundations from the ancient texts of Vedic literature, specifically the Vedas and the Upanishads. The synchronisation of current IKS courses with digital learning platforms is a possibility. The development of modules aimed at enhancing the training and orientation of educators can potentially enhance the efficacy of classroom instruction in Indigenous Knowledge Systems (IKS) courses. In order to enhance the proficiency of teachers in the Indian Knowledge Systems, dedicated teacher training facilities would be established to provide specialised training on certain themes. In order to foster innovation in the field of Indigenous Knowledge Systems (IKS), many strategies will be employed, including the implementation of Grand National Challenges, National Competitions, Hackathons, and the provision of incentives to promote innovative practises. Global cooperation can be facilitated by institutes like the Indian Council of Historical Research (ICHR) to support the undertaking of research with a focus on India. The provision of initial seed cash will be allocated for the construction of Indigenous Knowledge Systems (IKS) institutes in several Higher Education Institutions (HEIs). Various techniques will be employed to engage the public and promote the widespread dissemination of authentic Indigenous Knowledge Systems (IKS) in order to cultivate a knowledgeable and self-assured citizenry. Individuals will actively participate in a diverse range of Indigenous Knowledge Systems (IKS) projects through Jan Bhagidari programmes, which have resemblance to citizen science initiatives. Skill-based programmes will be implemented to generate employment opportunities for young individuals. The objective of IKS is to advance the preservation and promotion of heritage technology by implementing technological solutions that effectively exhibit Indian history to both the domestic population and the global community. The objective of this initiative is to secure a 10% share of global tourism and generate substantial employment prospects for the younger generation.
DOI: 10.17632/frbrpzzf7g
title: Dataset for large-scale, lateral-torsional buckling tests of continuous beams

description: A number of large-scale tests of a grillage system are summarized and reduced data is provided. The tests were completed in association with a Louisiana Transportation Research Center (LTRC) project for the Louisiana Department of Transportation (LDOT) whose goal was to better quantify behavior and limit states of steel bridge floor systems to refine longitudinal member (stringer) load-rating calculations. A number of tests focused on the behavior of the stringers resting on transverse members (a floor beam) and loaded out of plane, a system akin to a grillage. The system was proportioned with the expectation that stringer lateral torsional buckling, a key steel bridge beam design and load-rating limit state, would occur. The provided dataset includes specimen descriptions, representative photos and output from 58 tests. Investigated parameters included: stringer unbraced lengths; bracing types (i.e. bolted steel diaphragms verses clamped timber struts); load locations; and support conditions. Sample tests are described, and reduced results summarized and presented. A number of large-scale tests of a grillage system are summarized and reduced data is provided. The tests were completed in association with a Louisiana Transportation Research Center (LTRC) project for the Louisiana Department of Transportation (LDOT) whose goal was to better quantify behavior and limit states of steel bridge floor systems to refine longitudinal member (stringer) load-rating calculations. A number of tests focused on the behavior of the stringers resting on transverse members (a floor beam) and loaded out of plane, a system akin to a grillage. The system was proportioned with the expectation that stringer lateral torsional buckling, a key steel bridge beam design and load-rating limit state, would occur. The provided dataset includes specimen descriptions, representative photos and output from 58 tests. Investigated parameters included: stringer unbraced lengths; bracing types (i.e. bolted steel diaphragms verses clamped timber struts); load locations; and support conditions. Sample tests are described, and reduced results summarized and presented.
DOI: 10.6084/m9.figshare.24498304.v3
title: Self-protective behaviour experiment code

description: The code for the statistical analyses and figures in the manuscript: "noxious stimulation induces self-protective behaviour in bumblebees"
DOI: 10.15468/dl.7xcm3b
title: Occurrence Download

description: A dataset containing 763 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tapirus indicus Desmarest, 1819"
 ]
}

 The dataset includes 763 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013165-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11605074.v1
title: PLAID 2014

description: The 2014 version of Plug-Load Appliance Identification Dataset (PLAID), containing voltage and current measurements from different electrical household appliances sampled at 30 kHz, collected at 65 different locations in Pittsburgh, Pennsylvania (US).
DOI: 10.6084/m9.figshare.25435531.v1
title: Training Dataset for FeatureLTE: Regression (Generated by Classification Datasets)

description: Training datasets for the regression task of FeatureLTE. These datasets are not real regression problems. They are transformed by classification datasets.
DOI: 10.15468/dl.jth9mf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((43.4313 -17.5054,43.9059 -19.9421,43.0686 -21.0649,42.7023 -21.9969,43.1619 -23.5254,43.213 -24.5373,43.6164 -25.1504,44.9648 -25.1504,44.9648 -16.1504,43.978 -16.1504,43.9239 -16.5407,43.4313 -17.5054))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013164-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.21835032.v1
title: File 5

description: Species annotation information at order level
DOI: 10.6084/m9.figshare.22691488.v1
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.23791467.v1
title: Models for "On groundwater recharge in variably-saturated subsurface flow models"

description: Input files of models
DOI: 10.6084/m9.figshare.3385498.v1
title: Data from - An assessment of the spatial and temporal variability of biological endpoint responses of rainbow darter collected along an urban gradient.

description: Municipal wastewater effluent (MWWE) and its constituents, such as chemicals of emerging concern, pose a potential threat to the sustainability of fish populations by disrupting key endocrine functions in aquatic organisms. While studies have demonstrated changes in biological markers of exposure of aquatic organisms to groups of chemicals of emerging concern, the variability of these markers over time has not been sufficiently described in many wild fish species. The aim of this study was to assess the spatial and temporal variability of biological markers in response to MWWE exposures and to test the consistency of these same responses between seasons and among years. Rainbow darter (<i>Etheostoma caeruleum</i>) were collected in spring and fall seasons over a five-year period in the Grand River, ON, Canada. In addition to surface water chemistry (nutrients and selected pharmaceuticals), measures were taken across levels of biological organization in rainbow darter. The measurement of hormone production, gonad development, and intersex severity were temporally consistent and suggested impaired reproduction in male fish collected downstream of MWWE outfalls. In contrast, ovarian development and hormone production in females appeared to be influenced more by urbanization than MWWE. Measures of gene expression and somatic indices were highly variable between sites and years respectively, and were inconclusive when determining the impacts of MWWE overall. Robust biomonitoring programs must consider these factors in both the design and interpretation of results, especially when spatial and temporal sampling of biological endpoints is limited. Assessing the effects of contaminants and other stressors on fish in watersheds would be greatly enhanced by an approach that considers natural variability in the endpoints being measured.
DOI: 10.6084/m9.figshare.25006802.v1
title: Life tables of annual life expectancy and risk factors for mortality in cats in the United Kingdom

description: <b>Objectives:</b>The current study aimed to generate the first life tables for the UK companion cat population overall as well as broken down by sex and breed status, and to quantify associations between traits such as sex, neuter status, breed status and bodyweight with mortality.<b>Methods:</b>Life table construction and modelling included data on 7,936 confirmed deaths in cats under primary veterinary care at clinics participating in the VetCompass Programme in 2019. The life tables were built for cats overall, for female and male cats, and for crossbred cats and purebred cats. Multivariable generalised linear regression models were generated to explore risk factors for shortened lifespan.<b>Results</b><b>:</b>Life expectancy at age 0 for UK companion cats overall was 11.74 (95% CI: 11.61−11.87) years. The probability of death at each year interval increased with age from year interval 3−4, with the probability value not exceeding 0.05 before year 9. Female cats (12.51; 95% CI: 12.32−12.69) had 1.33-year longer life expectancy than male cats (11.18; 95% CI: 11.01−11.38) at age 0. Among 13 breeds (including crossbreed) analysed, Burmese and Birman had the longest life expectancy at year 0, showing 14.42 (95% CI: 12.91−15.93) and 14.39 (95% CI: 12.87−15.91), respectively. The Sphynx had the shortest life expectancy at year 0 among the breeds analysed at 6.68 (95% CI: 4.53−8.83). Being intact, purebred and non-ideal bodyweight were significantly linked to a decreased lifespan.<b>Conclusions</b><b> </b><b>and relevance:</b>The life tables presented here for pet cats in the UK overall, by sex and by crossbred and purebred can contribute to a better understanding of the life trajectory of cats, helping evidence-based decision-making for cat owners and the veterinary profession. We also provided updated life expectancy at age 0 of various cat breeds for 2019 and showed evidence of the association between non-ideal weight and a decreased lifespan.
DOI: 10.6084/m9.figshare.7147124.v4
title: Fire Model Calibration and Fire Propagation Experiments

description: Experimental results for section "5.1. Fire Propagation Experiments" of article entitled:"Self-Organising Swarms of Fire-Fighting Drones: Harnessing the Power of Collective Intelligence in Decentralised Multi-Robot Systems"<br>
DOI: 10.6084/m9.figshare.746990.v2
title: Genotype data from highland and lowland maize

description: GBS and 55K SNP data from 94 maize lines from highland and lowland Mexico. Included are passport data for the samples as well.
DOI: 10.17632/dy7kx8gxht
title: Trophy vs. IKEA

description: Dataset of the classroom experiments reported in IKEA Effect vs. Trophy Effect - An Experimental Comparison
DOI: 10.17632/r6vv282yxm
title: HYPERSPECTRAL DATASET OF PURE,LOW,MEDIUM AND HIGH INSECTICIDE CONCENTRATION IN LADY'SFINGER

description: Hyperspectral Dataset of Ladysfinger immersed in Pure , Low, Medium, High concentration of insecticide. 

The dataset consists of hyperspectral images of ladysfinger immersed in various concentration of fertilizer. They are divided into four categories:

1."Pure_ladysfinger" - images of ladysfinger bought from organic shops.
2."Low_concentration_insecticide_ladysfinger" - images of ladysfinger immersed in insecticide(Nagarjuna mida) solution at low concentration level i.e 1g or 1ml of fertilizer in 1 liter water and 
3."Medium_concentration_insecticide_ladysfinger" - images of ladysfinger immersed in insecticide solution at low concentration level i.e 3g or 3ml of fertilizer in 1 liter water and 
4. "High_concentration_insecticide_ladysfinger"- images of ladysfinger immersed in insecticide solution at low concentration level i.e 5g or 5ml of fertilizer in 1 liter water and 

The hyperspectral images are saved by default in .bil format. The bil files are converted into numpy format and this dataset is given in .tif format.

The entire dataset is classified in four folders.1. Pure, 2. Low, 3. Medium, 4. High.
Pure folder consist of 175 images. 
Low concentration consist of 222 images and immersed in low concentration solution. The insecticide used for this experiment is Nagarjuna mida(Imidacloprid 17.8% SL).
Medium concentration consist of 100 images and immersed in medium concentration solution. The insecticide used for this experiment is m power(fipronil 2.92% W/W EC).
Similarly, High concentration consist of 120 images and immersed in high concentration solution. The insecticide used for this experiment is m power(fipronil 2.92% W/W EC).
DOI: 10.25386/genetics.5987542.v1
title: Supplement to Dionne et al., 2018

description: Table S1: 












 Hemidriver lines
DOI: 10.6084/m9.figshare.13233860.v2
title: MEFISTO: Data for tutorials

description: Data and pre-trained MEFISTO model to run the vignettes and tutorials provided at https://biofam.github.io/MOFA2/MEFISTO.html.<br>* <b>Evodevo application:</b> Input data is provided as <i>evodevo.csv</i> and <i>evodevo.RData</i>, the trained MEFISTO model is provided in <i>evodevo_model.hdf5</i> * <b>Longitudinal microbiome application</b>: Input data is provided as <i>microbiome_data.csv</i> and <i>microbiome_features_metadata.csv</i>, the trained MEFISTO model is provided in <i>microbiome_model.hdf5</i> * <b>single cell multi-omics application</b>: Input data is provided as <i>scnmt_data.txt.gz</i><br> and <i>scnmt_sample_metadata.txt</i> the trained MEFISTO model is provided in <i>scnmt_mefisto_model.rds</i> * <b>spatial transcriptomics application</b>: Input data is downloaded as described in the tutorial, the trained MEFISTO model is provided in <i>ST_model.hdf5</i><br><br>
DOI: 10.6084/m9.figshare.14776128.v4
title: 1-km gridded LULC data under SSP-RCPs in China from 2020 to 2100

description: This is a high-resolution gridded LULC dataset in China under a full SSP/RCP matrix from 2020 to 2100, where the urban land change is well incorporated. (Please use this version)