cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5874365
title: Synergistic use of Far- and Mid-Infrared Spectral radiances for Polar Ice Cloud Detection from Space

description: Modtran5 was used to generate all .plt radiance files from the tp5 files provided All ERA5 data used in this study is provided in .mat format Codes for plotting the data for figures is provided in "codes" folder
DOI: 10.7284/131781
title: INS (Inertial Navigation System) data collected during research cruise SR1807 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.5874364
title: Synergistic use of Far- and Mid-Infrared Spectral radiances for Polar Ice Cloud Detection from Space

description: Modtran5 was used to generate all .plt radiance files from the tp5 files provided All ERA5 data used in this study is provided in .mat format Codes for plotting the data for figures is provided in "codes" folder
DOI: 10.7284/131809
title: INS (Inertial Navigation System) data collected during research cruise SR1807 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131810
title: INS (Inertial Navigation System) data collected during research cruise SR1807 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131650
title: Meteorological Station data collected during research cruise SR1807 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131656
title: Multibeam Echosounder data collected during research cruise SR1807 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131657
title: Multibeam Echosounder data collected during research cruise SR1807 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131652
title: Singlebeam Echosounder data collected during research cruise SR1807 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131654
title: TSG (Thermosalinograph) data collected during research cruise SR1807 using a Sea-Bird SBE-45 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131754
title: Winch data collected during research cruise SR1807 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131755
title: Winch data collected during research cruise SR1807 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/131756
title: Winch data collected during research cruise SR1807 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133576
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SR1901 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133578
title: Expendable Probe data collected during research cruise SR1901 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133580
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1901 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142531
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1901 using a Hemisphere V104S instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133586
title: Gravimeter data collected during research cruise SR1901 using a Bell BGM-3 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133584
title: INS (Inertial Navigation System) data collected during research cruise SR1901 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133591
title: INS (Inertial Navigation System) data collected during research cruise SR1901 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133592
title: INS (Inertial Navigation System) data collected during research cruise SR1901 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133593
title: INS (Inertial Navigation System) data collected during research cruise SR1901 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133575
title: Meteorological Station data collected during research cruise SR1901 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133579
title: TSG (Thermosalinograph) data collected during research cruise SR1901 using a Sea-Bird SBE-45 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142532
title: Ultra Short Baseline Positioning System data collected during research cruise SR1901 using a Kongsberg HiPAP instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133587
title: Winch data collected during research cruise SR1901 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133588
title: Winch data collected during research cruise SR1901 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133589
title: Winch data collected during research cruise SR1901 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6069/p8zk-ye28
title: Effects of alpha-crystallin gene knockout on zebrafish lens development

description: The alpha-crystallin small heat shock proteins contribute to the transparency and refractive properties of the vertebrate eye lens and prevent the protein aggregation that would otherwise produce lens cataract, the leading cause of human blindness. There are conflicting data in the literature as to what role that alpha-crystallins may play in early lens development. In this study we used CRISPR gene editing to produce zebrafish lines with null mutations for each of the three alpha-crystallin genes (cryaa, cryaba and cryabb). Absence of protein was confirmed by mass spectrometry and lens phenotypes were assessed with differential interference contrast microscopy and histology. Loss of alpha A-crystallin produced a variety of lens defects with varying severity in larval lenses at 3 and 4 dpf, but little significant change in normal fiber cell denucleation. Loss of either Alpha Ba- or Alpha Bb-crystallin produced no significant lens defects. Mutation of each Alpha-crystallin gene did not alter the expression levels of the remaining two, suggesting a lack of genetic compensation. These data confirm a developmental role for Alpha A-crystallin in lens development, but the range of phenotype severity suggests its loss simply increases the chance for defect, and that the protein is not essential. Our finding that cryaba and cryabb null mutants lack noticeable lens defects is congruent with insignificant transcript levels in lens epithelial and fiber cells. Future experiments can explore the molecular consequences of cryaa mutation and causes of lens defects in this null mutant, as well as the roles of other genes in lens development and function.
DOI: 10.5281/zenodo.4531450
title: Surface ammonia-oxidizer abundance during the late summer in the West Antarctic coastal system

description: <strong>ABSTRACT</strong> Marine ammonia oxidizers that oxidize ammonium to nitrite are abundant in polar waters, especially during the winter in the deeper mixed-layer of West Antarctic Peninsula (WAP) waters. However, the activity and abundance of ammonia-oxidizers during the summer in surface coastal Antarctic waters remain unclear. In this study, the ammonia-oxidation rates, abundance, and identity of ammonia-oxidizing bacteria (AOB) and archaea (AOA) were evaluated in the marine surface layer (to 30 m depth) in Chile Bay (Greenwich Island, WAP) over three consecutive late-summer periods (2017, 2018 and 2019). Ammonia-oxidation rates of 68.31 nmol N L<sup>-1 </sup>d<sup>-1</sup> (2018) and 37.28 nmol N L<sup>-1 </sup>d<sup>-1</sup> (2019) were detected from illuminated 2 m seawater incubations. However, high ammonia-oxidation rates between 267.75 and 109.38 nmol N L<sup>-1 </sup>d<sup>-1</sup> were obtained under the dark condition at 30 m in 2018 and 2019, respectively. During the late-summer sampling periods both stratifying and mixing events occurring in the water column over short timescales (February-March). Metagenomic analysis of seven nitrogen cycle modules revealed the presence of ammonia-oxidizers, such as the Archaea <em>Nitrosopumilus</em> and the Bacteria <em>Nitrosomonas</em> and <em>Nitrosospira</em>, with AOA often being more abundant than AOB. However, quantification of specific <em>amo</em>A gene transcripts showed number of AOB being two orders of magnitude higher than AOA, with <em>Nitrosomonas</em> representing the most transcriptionally active AOB in the surface waters. Additionally, <em>Candidatus</em> Nitrosopelagicus and <em>Nitrosopumilus</em>, phylogenetically related to surface members of the NP-ε and NP-γ clades respectively, were the predominant AOA. Our findings expand the known distribution of ammonium-oxidizers to the marine surface layer, exposing their potential ecological role in supporting the marine Antarctic system during the productive summer periods. <strong>Material and Methods</strong> <strong>Genomic identification of nitrification pathway. </strong> Proteins related to nitrification (<em>amo</em>CA, <em>hao</em>) and nitrite/nitrate reduction (<em>nir</em>BD, <em>nas</em>A) were searched in the protein catalog from Chile Bay metagenomes using hmmsearch (hmmer.org) using the hidden Markov models (HMM) profiles detailed in supplementary Table S3. Nitrification enzyme orthologues were identified with Diamond (diamond blastp -e 1e-5 --id 80 --query-cover 70). The identified proteins were curated against the KEGG database using Blast-KOALA. The file contigs_enzymes_nit_cyc.fna contains the contigs in which we identified the proteins related to nitrification and nitrite/nitrate reduction.
DOI: 10.5281/zenodo.4531449
title: Surface ammonia-oxidizer abundance during the late summer in the West Antarctic coastal system

description: <strong>ABSTRACT</strong> Marine ammonia oxidizers that oxidize ammonium to nitrite are abundant in polar waters, especially during the winter in the deeper mixed-layer of West Antarctic Peninsula (WAP) waters. However, the activity and abundance of ammonia-oxidizers during the summer in surface coastal Antarctic waters remain unclear. In this study, the ammonia-oxidation rates, abundance, and identity of ammonia-oxidizing bacteria (AOB) and archaea (AOA) were evaluated in the marine surface layer (to 30 m depth) in Chile Bay (Greenwich Island, WAP) over three consecutive late-summer periods (2017, 2018 and 2019). Ammonia-oxidation rates of 68.31 nmol N L<sup>-1 </sup>d<sup>-1</sup> (2018) and 37.28 nmol N L<sup>-1 </sup>d<sup>-1</sup> (2019) were detected from illuminated 2 m seawater incubations. However, high ammonia-oxidation rates between 267.75 and 109.38 nmol N L<sup>-1 </sup>d<sup>-1</sup> were obtained under the dark condition at 30 m in 2018 and 2019, respectively. During the late-summer sampling periods both stratifying and mixing events occurring in the water column over short timescales (February-March). Metagenomic analysis of seven nitrogen cycle modules revealed the presence of ammonia-oxidizers, such as the Archaea <em>Nitrosopumilus</em> and the Bacteria <em>Nitrosomonas</em> and <em>Nitrosospira</em>, with AOA often being more abundant than AOB. However, quantification of specific <em>amo</em>A gene transcripts showed number of AOB being two orders of magnitude higher than AOA, with <em>Nitrosomonas</em> representing the most transcriptionally active AOB in the surface waters. Additionally, <em>Candidatus</em> Nitrosopelagicus and <em>Nitrosopumilus</em>, phylogenetically related to surface members of the NP-ε and NP-γ clades respectively, were the predominant AOA. Our findings expand the known distribution of ammonium-oxidizers to the marine surface layer, exposing their potential ecological role in supporting the marine Antarctic system during the productive summer periods. <strong>Material and Methods</strong> <strong>Genomic identification of nitrification pathway. </strong> Proteins related to nitrification (<em>amo</em>CA, <em>hao</em>) and nitrite/nitrate reduction (<em>nir</em>BD, <em>nas</em>A) were searched in the protein catalog from Chile Bay metagenomes using hmmsearch (hmmer.org) using the hidden Markov models (HMM) profiles detailed in supplementary Table S3. Nitrification enzyme orthologues were identified with Diamond (diamond blastp -e 1e-5 --id 80 --query-cover 70). The identified proteins were curated against the KEGG database using Blast-KOALA. The file contigs_enzymes_nit_cyc.fna contains the contigs in which we identified the proteins related to nitrification and nitrite/nitrate reduction.
DOI: 10.5281/zenodo.5874005
title: Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1a)

description: This dataset contains a recording of the 435 MHz telemetry signals of the DELFI-PQ, EASAT-2, HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch. The recording was done on 2022-01-15, two days after launch. Antennas 1a and 1f from the Allen Telescope Array were used in dual XY (linear) polarization. The hardware configuration was as follows: the two antennas were connected to RFCB LO d, which was tuned to a frequency of 436.5 MHz and used an output IF of 512 MHz. A USRP N321 and a USRP N320 were connected to the IF output of the RFCB. The USRP N321 and digitized both polarizations of antenna 1a, and the USRP N320 digitized both polarizations of antenna 1f. Both USRPs used external 10 MHz reference and PPS coming from the observatory distribution system, and LO sharing was set up among all the channels. The IQ sample rate of the USRP was 3.84 Msps and a GNU Radio flowgraph was used to record IQ data to disk. The GNU Radio flowgraph stored the IQ data for each channel as 16-bin integers in the GNU Radio metatata file format, with detached headers. After recording, the data was converted to SigMF format. This dataset contains the data for antenna 1a The data for antenna 1f is in the dataset Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1f). The sigmf-collection file grouping all the recordings is provided in both datasets for convenience. Due to the lack of reliable TLEs, during the first part of the recording, the following TLE was tracked: 1 99489U 22013.68438100 .00000000 00000-0 57534-2 0 06<br> 2 99489 97.5121 83.3548 0000001 54.9139 307.6602 15.14117915 08 This TLE was fitted to previous Doppler observations of DELFI-PQ done by amateurs. After this object set, the following TLE was tracked: 1 70302C 22002B 22013.68430822 .00096806 00000-0 57494-2 0 02<br> 2 70302 97.5121 83.3548 0012811 276.7340 85.5055 15.11291562 14 This comes from the post-deployment TLEs in Celestrak for DELFI-PQ/EASAT-2/HADES.
DOI: 10.5281/zenodo.5874004
title: Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1a)

description: This dataset contains a recording of the 435 MHz telemetry signals of the DELFI-PQ, EASAT-2, HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch. The recording was done on 2022-01-15, two days after launch. Antennas 1a and 1f from the Allen Telescope Array were used in dual XY (linear) polarization. The hardware configuration was as follows: the two antennas were connected to RFCB LO d, which was tuned to a frequency of 436.5 MHz and used an output IF of 512 MHz. A USRP N321 and a USRP N320 were connected to the IF output of the RFCB. The USRP N321 and digitized both polarizations of antenna 1a, and the USRP N320 digitized both polarizations of antenna 1f. Both USRPs used external 10 MHz reference and PPS coming from the observatory distribution system, and LO sharing was set up among all the channels. The IQ sample rate of the USRP was 3.84 Msps and a GNU Radio flowgraph was used to record IQ data to disk. The GNU Radio flowgraph stored the IQ data for each channel as 16-bin integers in the GNU Radio metatata file format, with detached headers. After recording, the data was converted to SigMF format. This dataset contains the data for antenna 1a The data for antenna 1f is in the dataset Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1f). The sigmf-collection file grouping all the recordings is provided in both datasets for convenience. Due to the lack of reliable TLEs, during the first part of the recording, the following TLE was tracked: 1 99489U 22013.68438100 .00000000 00000-0 57534-2 0 06<br> 2 99489 97.5121 83.3548 0000001 54.9139 307.6602 15.14117915 08 This TLE was fitted to previous Doppler observations of DELFI-PQ done by amateurs. After this object set, the following TLE was tracked: 1 70302C 22002B 22013.68430822 .00096806 00000-0 57494-2 0 02<br> 2 70302 97.5121 83.3548 0012811 276.7340 85.5055 15.11291562 14 This comes from the post-deployment TLEs in Celestrak for DELFI-PQ/EASAT-2/HADES.
DOI: 10.5281/zenodo.5866602
title: Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1f)

description: This dataset contains a recording of the 435 MHz telemetry signals of the DELFI-PQ, EASAT-2, HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch. The recording was done on 2022-01-15, two days after launch. Antennas 1a and 1f from the Allen Telescope Array were used in dual XY (linear) polarization. The hardware configuration was as follows: the two antennas were connected to RFCB LO d, which was tuned to a frequency of 436.5 MHz and used an output IF of 512 MHz. A USRP N321 and a USRP N320 were connected to the IF output of the RFCB. The USRP N321 and digitized both polarizations of antenna 1a, and the USRP N320 digitized both polarizations of antenna 1f. Both USRPs used external 10 MHz reference and PPS coming from the observatory distribution system, and LO sharing was set up among all the channels. The IQ sample rate of the USRP was 3.84 Msps and a GNU Radio flowgraph was used to record IQ data to disk. The GNU Radio flowgraph stored the IQ data for each channel as 16-bin integers in the GNU Radio metatata file format, with detached headers. After recording, the data was converted to SigMF format. This dataset contains the data for antenna 1f. The data for antenna 1a is in the dataset Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1a). The sigmf-collection file grouping all the recordings is provided in both datasets for convenience. Due to the lack of reliable TLEs, during the first part of the recording, the following TLE was tracked: 1 99489U 22013.68438100 .00000000 00000-0 57534-2 0 06<br> 2 99489 97.5121 83.3548 0000001 54.9139 307.6602 15.14117915 08 This TLE was fitted to previous Doppler observations of DELFI-PQ done by amateurs. After this object set, the following TLE was tracked: 1 70302C 22002B 22013.68430822 .00096806 00000-0 57494-2 0 02<br> 2 70302 97.5121 83.3548 0012811 276.7340 85.5055 15.11291562 14 This comes from the post-deployment TLEs in Celestrak for DELFI-PQ/EASAT-2/HADES.
DOI: 10.5281/zenodo.5866601
title: Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1f)

description: This dataset contains a recording of the 435 MHz telemetry signals of the DELFI-PQ, EASAT-2, HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch. The recording was done on 2022-01-15, two days after launch. Antennas 1a and 1f from the Allen Telescope Array were used in dual XY (linear) polarization. The hardware configuration was as follows: the two antennas were connected to RFCB LO d, which was tuned to a frequency of 436.5 MHz and used an output IF of 512 MHz. A USRP N321 and a USRP N320 were connected to the IF output of the RFCB. The USRP N321 and digitized both polarizations of antenna 1a, and the USRP N320 digitized both polarizations of antenna 1f. Both USRPs used external 10 MHz reference and PPS coming from the observatory distribution system, and LO sharing was set up among all the channels. The IQ sample rate of the USRP was 3.84 Msps and a GNU Radio flowgraph was used to record IQ data to disk. The GNU Radio flowgraph stored the IQ data for each channel as 16-bin integers in the GNU Radio metatata file format, with detached headers. After recording, the data was converted to SigMF format. This dataset contains the data for antenna 1f. The data for antenna 1a is in the dataset Recording of DELFI-PQ/EASAT-2/HADES PocketQubes and other amateur satellites in the SpaceX Transporter 3 launch with the Allen Telescope Array on 2022-01-15 (antenna 1a). The sigmf-collection file grouping all the recordings is provided in both datasets for convenience. Due to the lack of reliable TLEs, during the first part of the recording, the following TLE was tracked: 1 99489U 22013.68438100 .00000000 00000-0 57534-2 0 06<br> 2 99489 97.5121 83.3548 0000001 54.9139 307.6602 15.14117915 08 This TLE was fitted to previous Doppler observations of DELFI-PQ done by amateurs. After this object set, the following TLE was tracked: 1 70302C 22002B 22013.68430822 .00096806 00000-0 57494-2 0 02<br> 2 70302 97.5121 83.3548 0012811 276.7340 85.5055 15.11291562 14 This comes from the post-deployment TLEs in Celestrak for DELFI-PQ/EASAT-2/HADES.
DOI: 10.34740/kaggle/dsv/3059347
title: Country Data