cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8132549.v2
title: Reassessment of <i>Unaysaurus tolentinoi</i> (Dinosauria: Sauropodomorpha) from the Late Triassic (early Norian) of Brazil, with a consideration of the evidence for monophyly within non-sauropodan sauropodomorphs

description: We present a systematic revision of the ‘prosauropod’ dinosaur <i>Unaysaurus tolentinoi</i>. Past phylogenetic treatments of this taxon have presented it as a key constituent of the low-diversity Plateosauridae. This clade, along with Massospondylidae, is currently regarded as a relatively non-controversial example of monophyly within non-sauropodan sauropodomorphs – an otherwise pectinate grade of animals from which the apically nested Sauropoda is derived. The inclusion of <i>Unaysaurus</i> within Plateosauridae is primarily dependent on similarities shared with the Northern Hemisphere taxon <i>Plateosaurus</i>, with a sister-taxon relationship between these taxa indicating the earliest known instance of Pangaean cosmopolitanism among early sauropodomorphs. However, an in-depth exploration of the character states that in the past have produced this relationship shows that many either present a complex distribution throughout early Sauropodomorpha, or are subject to ambiguities in the formulation and scoring of primary homologies. An updated cladistic analysis finds weak continued support for a sister-taxon relationship between <i>Unaysaurus</i> and <i>Plateosaurus</i>; however, this result is supported by synapomorphies that are either labile with respect to taxon inclusion, not exclusively restricted to the clade, or represented by character-state dichotomies of relatively subtle differentiation. These uncertainties aside, the validity of <i>Unaysaurus tolentinoi</i> remains supported by several unambiguous autapomorphies. Although strong anatomical evidence for monophyletic divergences amongst early sauropodomorphs remains elusive, the relatively low stratigraphical occurrence of <i>Unaysaurus</i> demonstrates that the typical ‘prosauropod’ bauplan – and hence habitual herbivory – had evolved by the early Norian.
DOI: 10.6084/m9.figshare.8132549.v1
title: Reassessment of <i>Unaysaurus tolentinoi</i> (Dinosauria: Sauropodomorpha) from the Late Triassic (early Norian) of Brazil, with a consideration of the evidence for monophyly within non-sauropodan sauropodomorphs

description: We present a systematic revision of the ‘prosauropod’ dinosaur <i>Unaysaurus tolentinoi</i>. Past phylogenetic treatments of this taxon have presented it as a key constituent of the low-diversity Plateosauridae. This clade, along with Massospondylidae, is currently regarded as a relatively non-controversial example of monophyly within non-sauropodan sauropodomorphs – an otherwise pectinate grade of animals from which the apically nested Sauropoda is derived. The inclusion of <i>Unaysaurus</i> within Plateosauridae is primarily dependent on similarities shared with the Northern Hemisphere taxon <i>Plateosaurus</i>, with a sister-taxon relationship between these taxa indicating the earliest known instance of Pangaean cosmopolitanism among early sauropodomorphs. However, an in-depth exploration of the character states that in the past have produced this relationship shows that many either present a complex distribution throughout early Sauropodomorpha, or are subject to ambiguities in the formulation and scoring of primary homologies. An updated cladistic analysis finds weak continued support for a sister-taxon relationship between <i>Unaysaurus</i> and <i>Plateosaurus</i>; however, this result is supported by synapomorphies that are either labile with respect to taxon inclusion, not exclusively restricted to the clade, or represented by character-state dichotomies of relatively subtle differentiation. These uncertainties aside, the validity of <i>Unaysaurus tolentinoi</i> remains supported by several unambiguous autapomorphies. Although strong anatomical evidence for monophyletic divergences amongst early sauropodomorphs remains elusive, the relatively low stratigraphical occurrence of <i>Unaysaurus</i> demonstrates that the typical ‘prosauropod’ bauplan – and hence habitual herbivory – had evolved by the early Norian.
DOI: 10.6084/m9.figshare.8132546
title: Bins_Vigneron_SAS2a_Winter_Summer.rar

description: Metagenomes assembled genomes (bins) recovered and analyzed in "<b>Contrasting winter versus summer microbial communities and metabolic functions in a permafrost thaw lake."</b><br> Adrien Vigneron<sup>1,2,3#</sup>, Connie Lovejoy<sup>1,2,3,4</sup>, Perrine Cruaud<sup>3,5</sup>, Dimitri Kalenitchenko<sup>1,3</sup>, Alexander Culley<sup>1,2,3</sup> and Warwick F. Vincent<sup>1,2,3</sup>
DOI: 10.6084/m9.figshare.8132546.v1
title: Bins_Vigneron_SAS2a_Winter_Summer.rar

description: Metagenomes assembled genomes (bins) recovered and analyzed in "<b>Contrasting winter versus summer microbial communities and metabolic functions in a permafrost thaw lake."</b><br> Adrien Vigneron<sup>1,2,3#</sup>, Connie Lovejoy<sup>1,2,3,4</sup>, Perrine Cruaud<sup>3,5</sup>, Dimitri Kalenitchenko<sup>1,3</sup>, Alexander Culley<sup>1,2,3</sup> and Warwick F. Vincent<sup>1,2,3</sup>
DOI: 10.6084/m9.figshare.8132453
title: AIBS_2016_GrantPeerReviewer_Survey_Anonymized

description: This data set is from a 2016 AIBS (American Institute of Biological Sciences) survey of biomedical grant reviewers and applicants and their perceptions of the review process. There were multiple areas of focus, including applicant perceptions of review feedback, and reviewer perceptions of the review process, as well as their levels of participation, motivations and preferences. The survey was reviewed by the Washington State University Office of Research Assurances (Assurance#FWA00002946) and granted an exemption from IRB review (IRB#15268; 45 CFR 46.101(b)(2)). As mentioned in previous publications, the survey was sent out in September of 2016 to 13,091 individual scientists from AIBS’s database through the use of Limesurvey, which de-identified the responses. All individuals participating in this survey were either reviewers for AIBS (36%) or had submitted an application as a PI which was reviewed by AIBS (71%) or both (12%). Respondents were asked to answer questions based on their most recent peer review/grant submission. The reported reviews did not have to be AIBS reviews (it is likely that the majority of reviews reported here were not for AIBS). The survey was open for two months. The original survey contained 60 questions and was divided into 5 subsections. Several publications have resulted from analysis of this data: https://link.springer.com/article/10.1007/s10669-018-9677-6. The questions examined had either Yes/No or Likert interval rating scale response choices. Included in the data set are individual respondent answers as well as the full original questions in the first row. It should be noted, for most questions respondents were also given the choice to select “no answer/prefer not to answer.” (sometimes represented as the number 6 or by N/A). In some instances, answers were not required, so some are blank. Please see publications for more details.<br><br>
DOI: 10.6084/m9.figshare.8132450.v1
title: Hierarchical space-time modeling of asymptotically independent exceedances with an application to precipitation data

description: The statistical modeling of space-time extremes in environmental applications is key to understanding complex dependence structures in original event data and to generating realistic scenarios for impact models. In this context of high-dimensional data, we propose a novel hierarchical model for high threshold exceedances defined over continuous space and time by embedding a space-time Gamma process convolution for the rate of an exponential variable, leading to asymptotic independence in space and time. Its physically motivated anisotropic dependence structure is based on geometric objects moving through space-time according to a velocity vector. We demonstrate that inference based on weighted pairwise likelihood is fast and accurate. The usefulness of our model is illustrated by an application to hourly precipitation data from a study region in Southern France, where it clearly improves on an alternative censored Gaussian space-time random field model. While classical limit models based on threshold-stability fail to appropriately capture relatively fast joint tail decay rates between asymptotic dependence and classical independence, strong empirical evidence from our application and other recent case studies motivates the use of more realistic asymptotic independence models such as ours.
DOI: 10.6084/m9.figshare.8132450.v2
title: Hierarchical Space-Time Modeling of Asymptotically Independent Exceedances With an Application to Precipitation Data

description: The statistical modeling of space-time extremes in environmental applications is key to understanding complex dependence structures in original event data and to generating realistic scenarios for impact models. In this context of high-dimensional data, we propose a novel hierarchical model for high threshold exceedances defined over continuous space and time by embedding a space-time Gamma process convolution for the rate of an exponential variable, leading to asymptotic independence in space and time. Its physically motivated anisotropic dependence structure is based on geometric objects moving through space-time according to a velocity vector. We demonstrate that inference based on weighted pairwise likelihood is fast and accurate. The usefulness of our model is illustrated by an application to hourly precipitation data from a study region in Southern France, where it clearly improves on an alternative censored Gaussian space-time random field model. While classical limit models based on threshold-stability fail to appropriately capture relatively fast joint tail decay rates between asymptotic dependence and classical independence, strong empirical evidence from our application and other recent case studies motivates the use of more realistic asymptotic independence models such as ours. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.8132285
title: VGG-360 Face

description: <b>--------------------------------</b><b>VGG-360 Face Dataset</b><b>--------------------------------</b><b><br></b><b><br></b>Description:<br><b><br></b>This dataset uses images from the <b>VGG Face Dataset</b> of Oxford University (http://www.robots.ox.ac.uk/~vgg/data/vgg_face) to simulate, for each face image, 10 different projections on a 360º camera. This is done by using camera angle information from <b>MOT-360 Face Dataset</b> (which can be downloaded at https://figshare.com/s/5f8a69937014e4720625) and the pixel coordinates of the eyes of each face image. As these coordinates are not provided by the original authors, the Dlib Face Detector (http://dlib.net/) was used in this process. However, the detector could not be able to detect all faces from the VGG Face Dataset. Therefore, approximately 750K from this dataset images were used to simulate the projections, yielding a total of 7.5M images in this dataset.<br>Citation:<br><br>When referencing the dataset, please use the following BibTex citation:<br>@inproceedings{Cirne2019,author = "M. Cirne and F. Andalo and R. Dias and T. Resek and G. Bertocco and R. Torres and A. Rocha",title = "Deep Face Verification for Spherical Images",booktitle = "{IEEE} International Conference on Image Processing",year = "2019"}<br>
DOI: 10.6084/m9.figshare.8132285.v1
title: VGG-360

description: <b>--------------------------------</b><b>VGG-360 Face Dataset</b><b>--------------------------------</b><b><br></b><b><br></b>Description:<br><b><br></b>This dataset uses images from the <b>VGG Face Dataset</b> of Oxford University (http://www.robots.ox.ac.uk/~vgg/data/vgg_face) to simulate, for each face image, 10 different projections on a 360º camera. This is done by using camera angle information from <b>MOT-360 Face Dataset</b> (which can be downloaded at https://figshare.com/s/5f8a69937014e4720625) and the pixel coordinates of the eyes of each face image. As these coordinates are not provided by the original authors, the Dlib Face Detector (http://dlib.net/) was used in this process. However, the detector could not be able to detect all faces from the VGG Face Dataset. Therefore, approximately 750K from this dataset images were used to simulate the projections, yielding a total of 7.5M images in this dataset.<br>Citation:<br><br>When referencing the dataset, please use the following BibTex citation:<br>@inproceedings{Cirne2019,author = "M. Cirne and F. Andalo and R. Dias and T. Resek and G. Bertocco and R. Torres and A. Rocha",title = "Deep Face Verification for Spherical Images",booktitle = "{IEEE} International Conference on Image Processing",year = "2019"}<br>
DOI: 10.6084/m9.figshare.8132285.v2
title: VGG-360 Face

description: <b>--------------------------------</b><b>VGG-360 Face Dataset</b><b>--------------------------------</b><b><br></b><b><br></b>Description:<br><b><br></b>This dataset uses images from the <b>VGG Face Dataset</b> of Oxford University (http://www.robots.ox.ac.uk/~vgg/data/vgg_face) to simulate, for each face image, 10 different projections on a 360º camera. This is done by using camera angle information from <b>MOT-360 Face Dataset</b> (which can be downloaded at https://figshare.com/s/5f8a69937014e4720625) and the pixel coordinates of the eyes of each face image. As these coordinates are not provided by the original authors, the Dlib Face Detector (http://dlib.net/) was used in this process. However, the detector could not be able to detect all faces from the VGG Face Dataset. Therefore, approximately 750K from this dataset images were used to simulate the projections, yielding a total of 7.5M images in this dataset.<br>Citation:<br><br>When referencing the dataset, please use the following BibTex citation:<br>@inproceedings{Cirne2019,author = "M. Cirne and F. Andalo and R. Dias and T. Resek and G. Bertocco and R. Torres and A. Rocha",title = "Deep Face Verification for Spherical Images",booktitle = "{IEEE} International Conference on Image Processing",year = "2019"}<br>
DOI: 10.6084/m9.figshare.8132264
title: A new macronarian sauropod from the Upper Jurassic of Portugal

description: The Upper Jurassic of Portugal is relatively rich in sauropod remains. We describe a new sauropod specimen, which includes a partial tail, pectoral and pelvic girdle elements, and hind limb bones, from Praia de Valmitão (Praia da Amoreira-Porto Novo Formation, upper Kimmeridgian–lowermost Tithonian). This specimen constitutes the holotype of <i>Oceanotitan dantasi</i>, gen. et sp. nov., which shows a unique combination of characters, including the presence of anterior caudal vertebrae with a medial accessory articulation on the prezygapophysis; a circular, rough tuberosity on the medial surface of the scapula; an elliptical concavity on the ventral face of the scapula; an ischium that is shorter than the pubis; and a robust fourth trochanter located at the midline of the posterior face of the femur. Multiple phylogenetic analyses recover <i>Oceanotitan dantasi</i> within Titanosauriformes, with one resolving it at the base of Somphospondyli. This taxon shares several apomorphies with some Cretaceous somphospondylans and turiasaurs, such as the transverse furrow on the chevron articulations (shared with <i>Tangvayosaurus</i> and <i>Phuwiangosaurus</i>) and the ischium being shorter than the pubis (shared with <i>Mierasaurus</i> and somphospondylans). <i>Oceanotitan</i> might represent the oldest known somphospondylan, and its establishment increases the known diversity of the Late Jurassic–earliest Early Cretaceous sauropod fauna in the Iberian Peninsula, which also consists of turiasaurs, diplodocids and macronarians (non-camarasaurid, non-titanosauriform macronarians; camarasaurids; and brachiosaurids). This high diversity in sauropods suggests that this region might have played an important role during the Late Jurassic in the dispersal and diversification of several sauropod lineages between North America, Africa, and Europe, especially macronarians.
DOI: 10.6084/m9.figshare.8132264.v1
title: A new macronarian sauropod from the Upper Jurassic of Portugal

description: The Upper Jurassic of Portugal is relatively rich in sauropod remains. We describe a new sauropod specimen, which includes a partial tail, pectoral and pelvic girdle elements, and hind limb bones, from Praia de Valmitão (Praia da Amoreira-Porto Novo Formation, upper Kimmeridgian–lowermost Tithonian). This specimen constitutes the holotype of <i>Oceanotitan dantasi</i>, gen. et sp. nov., which shows a unique combination of characters, including the presence of anterior caudal vertebrae with a medial accessory articulation on the prezygapophysis; a circular, rough tuberosity on the medial surface of the scapula; an elliptical concavity on the ventral face of the scapula; an ischium that is shorter than the pubis; and a robust fourth trochanter located at the midline of the posterior face of the femur. Multiple phylogenetic analyses recover <i>Oceanotitan dantasi</i> within Titanosauriformes, with one resolving it at the base of Somphospondyli. This taxon shares several apomorphies with some Cretaceous somphospondylans and turiasaurs, such as the transverse furrow on the chevron articulations (shared with <i>Tangvayosaurus</i> and <i>Phuwiangosaurus</i>) and the ischium being shorter than the pubis (shared with <i>Mierasaurus</i> and somphospondylans). <i>Oceanotitan</i> might represent the oldest known somphospondylan, and its establishment increases the known diversity of the Late Jurassic–earliest Early Cretaceous sauropod fauna in the Iberian Peninsula, which also consists of turiasaurs, diplodocids and macronarians (non-camarasaurid, non-titanosauriform macronarians; camarasaurids; and brachiosaurids). This high diversity in sauropods suggests that this region might have played an important role during the Late Jurassic in the dispersal and diversification of several sauropod lineages between North America, Africa, and Europe, especially macronarians.
DOI: 10.6084/m9.figshare.8132261
title: 1000G_2504_high_coverage.20190425_NYGC_GATK.chr21.spvcf.gz

description: chr21 spVCF+bgzip file derived from New York Genome Center's GATK joint variant call set of 1000 Genomes Project deep whole-genome resequencing (N=2,504).<br>Tweet announcing original data: https://twitter.com/notSoJunkDNA/status/1125401248348495873<br>Original VCF (18GB): http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/working/20190425_NYGC_GATK/CCDG_13607_B01_GRM_WGS_2019-02-19_chr21.recalibrated_variants.vcf.gzSqueezed & encoded through spVCF v1.0.0: https://github.com/mlin/spVCF<br>
DOI: 10.6084/m9.figshare.8132198
title: Questionnaire to evaluate pain and opioid misuse.docx

description: To determine the extent of opioid misuse by patients with chronic non-cancer pain followed at a French pain management clinic.<b> </b>A questionnaire on pain (severity, causes and management) and opioid misuse (based on the 11 DSM-V criteria for substance abuse disorders) was administered by a health professional to patients during a short hospitalization. <b> </b>
DOI: 10.6084/m9.figshare.8132198.v1
title: Questionnaire to evaluate pain and opioid misuse.docx

description: To determine the extent of opioid misuse by patients with chronic non-cancer pain followed at a French pain management clinic.<b> </b>A questionnaire on pain (severity, causes and management) and opioid misuse (based on the 11 DSM-V criteria for substance abuse disorders) was administered by a health professional to patients during a short hospitalization. <b> </b>
DOI: 10.6084/m9.figshare.8132159
title: DATA_Orang-utan_Signalling

description: The dataset of gestures and signals coded for our initial study of orang-utan communication in 16 individuals from the Sabangau peat-swamp forest in Borneo, Indonesia.
DOI: 10.6084/m9.figshare.8131961
title: Chapter 5

description: Data and R code associated with the chapter 5 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131961.v1
title: Chapter 5

description: Data associated with the chapter 5 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131961.v2
title: Chapter 5

description: Data and R code associated with the chapter 5 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131961.v4
title: Chapter 5

description: Data and R code associated with the chapter 5 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131961.v3
title: Chapter 5

description: Data and R code associated with the chapter 5 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131949
title: Chapter 4

description: Data and R code associated with the chapter 4 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131949.v1
title: Chapter 4

description: Data associated with the chapter 4 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131949.v2
title: Chapter 4

description: Data associated with the chapter 4 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".<br>
DOI: 10.6084/m9.figshare.8131943
title: Chapter 3

description: Data and R code associated with the chapter 3 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131943.v1
title: Chapter 3

description: Data associated with the chapter 3 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131943.v3
title: Chapter 3

description: Data and R code associated with the chapter 3 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131943.v2
title: Chapter 3

description: Data associated with the chapter 3 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131928
title: Chapter 2

description: Data and R code associated with the chapter 2 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131928.v1
title: Chapter 2

description: Data associated with the chapter 2 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131928.v3
title: Chapter 2

description: Data and R code associated with the chapter 2 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131928.v2
title: Chapter 2

description: Data associated with the chapter 2 of the PhD thesis entitled "Vertebrate community disassembly in human-induced Amazonian forest islands".
DOI: 10.6084/m9.figshare.8131823
title: An improved genome assembly and genetic linkage map for asparagus bean, Vigna unguiculata ssp. sesquipedialis

description: SNP markers and bin map of asparagus bean
DOI: 10.6084/m9.figshare.8131817
title: Colour Reflectance Spectra, Ambient Light Spectrum, and Zebra Finch Sensitivity Curves from Categorical colour perception occurs in both signalling and non-signalling colour ranges in a songbird

description: Spectra of the colours and lighting used in this experiment as well as zebra finch spectral sensitivity curves.