cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bb7q8/1
title: Impact, Taxa, Cover, Count and Assemblage data

description: Impact, Taxa, Cover and count data show metrics as described in the paper. The assemblage data is averaged over frame grabs per site as described in the paper. Details of Towed Underwater Video System, Habitat, Area and Site are included. Metrics are labelled on separate tabs in the same file.
DOI: 10.5061/dryad.bt5v6/1
title: DC6.vcf

description: SNPs identified in cherry strain DC 6 using GATK. SNPs were called on both DC 6 and DC 16, then sites for each strain were separated, and all non-SNP positions removed using VCFtools.
DOI: 10.5061/dryad.bt5v6/2
title: DC16.vcf

description: SNPs identified in cherry strain DC 16 using GATK. SNPs were called on both DC 6 and DC 16, then sites for each strain were separated, and all non-SNP positions removed using VCFtools.
DOI: 10.5061/dryad.bt5v6/3
title: RNAseqCounts

description: Read counts for each gene across all strains analyzed in EdgeR.
DOI: 10.5061/dryad.bt5v6/4
title: OakvVintopTags

description: EdgeR output for differentially expressed genes in oak versus vineyard strains.
DOI: 10.5061/dryad.bt5v6/5
title: DCtopTags

description: EdgeR output for DC-specific differentially expressed genes.
DOI: 10.5061/dryad.bt5v6/6
title: DCvOaktopTags

description: EdgeR output for differentially expressed genes in DC versus oak strains.
DOI: 10.5061/dryad.bt7v0/4
title: Gamma modulation source maps (Fig 2D)

description: Nifti file containing a map of the grand average gamma modulation index scores from all 26 subjects, normalised to MNI space, as shown in Fig 2D. Note - in order to view this file correctly it is necessary to use a bidirectional colour map that can display positive and negative values using different colours, such as 'jet' or 'flow'.
DOI: 10.5061/dryad.bt7v0/5
title: Alpha modulation TFR - sensor level (Fig 2A/B)

description: Fieldtrip structure containing a time-frequency representation of the grand average alpha modulation index scores from all 26 subjects at the sensor level. The user will need to download and install the fieldtrip matlab toolbox (http://www.fieldtriptoolbox.org/) to visualise this data. The following matlab code will reproduce the bottom rows of Fig 2A and Fig 2B from this structure:figurecfg=[];cfg.zlim=[-9 9];cfg.channel={'MLO*'};subplot(2,1,1),ft_singleplotTFR(cfg,amod_g);cfg.channel={'MRO*'};subplot(2,1,2),ft_singleplotTFR(cfg,amod_g);
DOI: 10.5061/dryad.bt7v0/6
title: Gamma modulation TFR - sensor level (Fig 2A/B)

description: Fieldtrip structure containing a time-frequency representation of the grand average alpha modulation index scores from all 26 subjects at the sensor level. The user will need to download and install the fieldtrip matlab toolbox (http://www.fieldtriptoolbox.org/) to visualise this data. The following matlab code will reproduce the top rows of Fig 2A and Fig 2B from this structure:figurecfg=[];cfg.zlim=[-1.5 1.5];cfg.channel={'MLO*'};subplot(2,1,1),ft_singleplotTFR(cfg,gmod_g);cfg.channel={'MRO*'};subplot(2,1,2),ft_singleplotTFR(cfg,gmod_g);
DOI: 10.5061/dryad.bt7v0/7
title: SLF fiber tracts

description: Grand-averaged fiber tract maps of the SLF branches from all 26 subjects.
DOI: 10.5061/dryad.cb978/1
title: MAIN DATA
DOI: 10.5061/dryad.cb978/2
title: SUPPLEMENTARY DATA FOR APPENDICES (BIOTIC AND ABIOTIC PARAMETERS)
DOI: 10.5061/dryad.d88dg/1
title: Matrix Exocelina Melanesia Paper

description: Data matrix in Nexus and Geneious format
DOI: 10.5061/dryad.db428/1
title: Quantifying demographic uncertainty: Bayesian methods for Integral Projection Models (IPMs) Parameters

description: Comma delimited file (csv) containing parameter estimates used to construct the posterior distributions for calculating the stochastic population growth rate and the sensitivities of the associated vital rates.  The first row of the file contains the names of the parameters.
DOI: 10.5061/dryad.f8fk7/1
title: Larval nest locations and host plants of Euphydryas maturna from Sipoo, S Finland
DOI: 10.5061/dryad.f8fk7/2
title: Larval nest locations and host plants of Euphydryas maturna from Sipoo, S Finland
DOI: 10.5061/dryad.g3925/1
title: Ontogeny_fairness_seven_societies_data

description: Long form data for Blake, McAuliffe, Corbit, Callaghan, Barry, Bowie, Kleutsch, Kramer, Ross, Vongsachang, Wrangham & Warneken
DOI: 10.5061/dryad.g3925/2
title: Data and R code for The ontogeny of fairness in seven societies

description: Data in long form and R statistical code
DOI: 10.5061/dryad.h75ht.1
title: Data from: Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils
DOI: 10.5061/dryad.h75ht.2/16.2
title: Synechocystis sp. PCC 9635

description: genome sequence of Synechocystis sp. PCC 9635
DOI: 10.5061/dryad.h75ht.2/17.2
title: APPENDIX S1. Names of genes used in the phylogenomic analyses

description: Highly conserved proteins, which have been identified via similarity searches. In total 756 proteins are present in all 65 cyanobacterial taxa used in this study. Concatenated gene alignments were used for the phylogenomic tree reconstruction.
DOI: 10.5061/dryad.h75ht.2/18.2
title: APPENDIX S3. Trees presented in this study

description: (a) Phylogenomic Maximum Likelihood tree. (b) Ribosomal Maximum Likelihood tree. (c) Trees with divergence dates.
DOI: 10.5061/dryad.h75ht.2/19.2
title: APPENDIX S2. Multiple sequence alignment

description: Multiple sequence alignment used for tree reconstruction presented in phylip format.
DOI: 10.5061/dryad.k18nk/1
title: Ware et al ClimateSurfaces

description: The zip file contains six netCDF files. These are global ocean climatologies for three time points (2011, 2050, and 2100) for the variables sea surface temperature (SST) and sea surface salinity (SSS).
DOI: 10.5061/dryad.m8446/1
title: Fernández-de-Uña et al JEcol Dataset

description: Annual CO2 partial pressure, basal area increment and plot basal area data per treatment (control vs. thinning) for Pinus sylvestris (two sites), Quercus faginea (one site) and Quercus pyrenaica (two sites)
DOI: 10.5061/dryad.p286g/1
title: STDP dataset with estimated changes in P , q and the mean weight
DOI: 10.5061/dryad.p45p4/1
title: Gordon&Letnic2015_Data

description: All data from journal article
DOI: 10.5061/dryad.pd670.1
title: Data from: How innovative are new drugs launched in the UK? A retrospective study of new drugs listed in the British National Formulary (BNF) 2001-2012
DOI: 10.5061/dryad.pd670.2
title: Data from: How innovative are new drugs launched in the UK? A retrospective study of new drugs listed in the British National Formulary (BNF) 2001-2012
DOI: 10.5061/dryad.pd670.2/1.2
title: New drugs in the UK by year and innovation level 2001-2012

description: New drugs listed in the British National Formulary (BNF) from 2001 to 2012 (inclusive) categorised as slightly innovative (1), moderately innovative (2), and highly innovative (3).
DOI: 10.5061/dryad.rr084/1
title: Microsatellite Data for 246 Lasiurus cinereus (14 loci)

description: Microsatellite genotype scores for 246 hoary bats (Lasiurus cincereus) at 14 loci.
DOI: 10.5061/dryad.rr084/2
title: Genotype scores for 142 Lasiurus borealis (14 loci)

description: Microsatellite genotype scores for 142 easter red bats (Lasiurus cincereus) at 14 loci.
DOI: 10.5061/dryad.rr084/3
title: Hair hydrogen isotope data for 246 Lasiurus cinereus

description: Stable hydrogen isotope ratios of hair for hoary bats (Lasiurus cinereus)
DOI: 10.5061/dryad.rr084/4
title: Hair hydrogen isotope data for 144 Lasiurus borealis

description: Stable hydrogen isotope ratios of hair for red bats (Lasiurus borealis)
DOI: 10.5061/dryad.t671s/3
title: IBE_vs_IBD_tests

description: R scripts to perform the Mantel tests for detecting isolation-by-distance and isolation by-environment patterns using the ecodist package
DOI: 10.5061/dryad.t671s/4
title: KASP_details

description: Sequences (raw data) on which primer design for KASP assay was based and SNPs therein
DOI: 10.5061/dryad.t671s/5
title: outlier_tests

description: Results of outlier tests using Bayescan, FLK, hFDIST and LFMM, and R scripts for running LFMM using the LEA package
DOI: 10.5061/dryad.t671s/6
title: sampling_sites

description: Lambert 3 coordinates and altitude of all sampled individuals
DOI: 10.5061/dryad.t671s/7
title: STRUCTURE

description: Shell scripts and results of the STRUCTURE analysis with K=1 to 9
DOI: 10.5061/dryad.t671s/8
title: SNP_data

description: Raw SNP data called from transcriptome accession no.: JV134525–JV157085 TSA NCBI, and inferred SNP data using the software PHASE
DOI: 10.5061/dryad.th40d/1
title: recording and male repertoires, coded songs

description: The file in MS Excel format containing three sheets:1: male repertoires: each line represent a single Tree Pipit males from the studied locality; for each of them, the following information is provided: the total number of song recordings available, the number of syllables and bi-syllables detected in the male's repertoire, and presence/absence of each syllable and bi-syllable type.2: recording repertoires: each line represent a single recording of Tree Pipit songs; for each of them, the following information is provided: male identity (as in the first sheet), code of the recording, year and date of recording, number of songs within a recording, availability of observation data on colour rings, the number of syllables and bi-syllables detected within the recording, and presence/absence of each syllable and bi-syllable type. 3: coded songs: each line represent a single Tree Pipit song for which the syllable sequence was noted; for each of them, the following information is provided:  male identity (as in the first and second sheets), code of the recording (as in the second sheet), and sequence of syllables within the song. Each syllable is coded by letter that may be followed by number; numbers immediately preceding letters denote the number of syllable repetitions; bi-syllables are enclosed in parentheses; numbers before parentheses denote bi-syllable repetitions.
DOI: 10.5061/dryad.th40d/2
title: Tree Pipit syllable catalogue (Brdy)

description: The file contains spectrograms of all syllable types differentiated in songs of the studied Tree Pipit population. Characteristics by which different syllable types differ from each other are highlighted by arrows.
DOI: 10.5061/dryad.th40d/3
title: Tree Pipit male ID - test package

description: A package containing all files necessary to replicate the blind test of assignment of Tree Pipit recordings to individual males by inexperienced observers. Participants are provided by a file with instructions, a syllable catalogue, spectrograms of 30 recordings included in the test, and test recordings in a WAV format. (All these materials are provided in a single ZIP file that can be distributed to the participants.) Note that the correct solution of the test is provided separately.
DOI: 10.5061/dryad.th40d/4
title: Tree Pipit male ID - test solution

description: The solution of the blind test of assignment of Tree Pipit recordings to individual males by inexperienced observers. The grouping of the 30 recordings included in the test, and key identification features of the respective males, are provided.
DOI: 10.5061/dryad.vc6gc/3
title: FASTA file

description: Sequence data for each OTU in FASTA format.
DOI: 10.5061/dryad.vc6gc/4
title: Fecal CP, isotopes

description: Data on isotopic composition of fecals and forage quality as determined with near infrared spectroscopy.
DOI: 10.5061/dryad.vc6gc/5
title: ReadMe

description: Descriptions of columns in data files.
DOI: 10.5061/dryad.0kt87/1
title: Iris surface features data - Edwards et al.

description: This Excel file provides individual data for the iris surface features described in Edwards et. al paper. Please, see Materials and Methods section in the paper for additional information.
DOI: 10.5061/dryad.16mp4/3
title: mtDNA Haplotype Sequence Alignment

description: Swamp type and river type haplotype alignments. These data were used to generate Fig.S1.
DOI: 10.5061/dryad.30j63.1
title: Data from: An expansion of age constraints for microbial clades that lack a conventional fossil record using phylogenomic dating
DOI: 10.5061/dryad.30j63.2
title: Data from: An expansion of age constraints for microbial clades that lack a conventional fossil record using phylogenomic dating
DOI: 10.5061/dryad.3pk73/1
title: Network_data_and_Rcode

description: The data file contains the network data and Rcode used in the study. The files Zackenberg_1996.xlsx and Zackenberg_1997.xlsx contain the daily pollinator-plant interaction matrices for 1996 and 1997, respectively. These matrices were used by the first time in:Olesen JM, Bascompte J, Elberling H, and Jordano P. (2008) Temporal dynamics in a pollinator network. Ecology 89, 1573-1582. The code to calculate the feasibility, stability, and nestedness of any given matrix is provided and commented in toolbox.R. We are also proving a commented example (example.R) to illustrate the application of this code as in the manuscript.
DOI: 10.5061/dryad.5fn37/1
title: Data from Robin migration and climate change

description: Variable name description:ID = ID for individual robins (progressive numbers);Lat2 = Latitude of the site where Robin was recovered during wintering;Lon2 = Longitude of the site where Robin was recovered during wintering;Lat1 = Latitude of the site where Robin was recovered during breeding;Lon1 = Longitude of the site where Robin was recovered during breeding;Year = Year when a robin was recovered in winter (from November of year i to February of year i + 1);Country = Country where a robin was observed during the breeding period;gridID = ID of the 2.5 ° lat x 2.5° lon cell where the robin was observed during the breeding period;Cluster = Cluster to which the robin belong, as assessed by migratory connectivity analysis;DistMig = migration distance calculated as the great-circle (orthodromic) distance between breeding and wintering position (km);CminT = temperature anomaly for the cell where the robin was observed breeding during the winter when it was recovered in winter (°C);CmaxTS = temperature anomaly for the cell where the robin was observed breeding during the summer when it was recovered in winter (°C);CminAT = temperature anomaly for the cell where the robin was observed breeding during the autumn when it was recovered in winter (°C);CminT1 = temperature anomaly for the cell where the robin was observed breeding during the winter preceding the one when it was recovered in winter;pop.index = population index in the country where a robin was observed breeding in the year when it was recovered in winter (index in the reference year = 0);Adult = whether a robin was adult or young when recovered in winter;
DOI: 10.5061/dryad.5n10d/1
title: Genotype calls for Heliconius erato clade (vcf format)

description: Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. File prefix is _. Files are standard vcf format.
DOI: 10.5061/dryad.5n10d/2
title: Data and trees for BEAST analysis of Heliconius erato clade

description: Input sequences with run parameters (xml files) and resulting trees (annot files) for BEAST analysis.  Analyzed the Heliconius erato clade across 350-kb unlinked to color pattern.  Compared relaxed clock to strict clock.
DOI: 10.5061/dryad.5n10d/3
title: Data and tree for MrBayes analysis of Heliconius erato clade color unlinked loci

description: Input sequences and run parameters (.nex files) and resulting tree (.tre file) for MrBayes analysis. Analyzed the Heliconius erato clade across 350-kb unlinked to color pattern.
DOI: 10.5061/dryad.5n10d/4
title: Data and tree for MrBayes analysis of Heliconius erato clade red color locus

description: Input sequences and run parameters (.nex files) and resulting tree (.tre file) for MrBayes analysis. Analyzed the Heliconius erato clade across 65-kb red color pattern locus.
DOI: 10.5061/dryad.713v1/1
title: Szulkin_Blue_Tit_working_dataset_MAF0.02_callrate0.9

description: The filtered VCF file containing 12K SNPs from Continental and Corsican populations of Mediterranean blue tit. The 12K SNP VCF file can be filtered further to subsets of individuals where no family ties are present, or that contribute to the symmetrical minimal dataset (more info about these datasets can be found in the Materials & Methods section and in Supplementary Information files).
DOI: 10.5061/dryad.713v1/2
title: szulkin_blue_tit_sample_details

description: An excel spreadsheet providing further details regarding each sequenced bird (GPS coordinates, information on birth year, population of origin, nestbox of first reproduction, nestbox coordinates and nr of reads obtained for each individual). The relationships between the different nested datasets are also provided and can be used to generate 6K and 3K datasets.
DOI: 10.5061/dryad.713v1/3
title: List_19760_Consensus_RAD_Stacks_1_80

description: Full list of consensus RAD tag sequences (in fasta format) that were used for blast annotations.
DOI: 10.5061/dryad.713v1/4
title: Szulkin_Blue_Tit_raw_unfiltered_209K_SNPs_from_Stacks_maf1

description: The raw VCF file generated with Stacks, containing 209K SNPs with a global minor allele frequency of at least 0.01. This dataset was then filtered based on quality and population genetic criteria in vcftools to produce the working dataset conatining 12 SNPs.
DOI: 10.5061/dryad.8787m/10
title: Giraffa camelopardalis_C2_50%

description: Ready to 3D print STL file of Giraffa camelopardalis C2 (axis).
DOI: 10.5061/dryad.8787m/11
title: Giraffa camelopardalis_heart

description: Interactive PDF model of Giraffa camelopardalis heat. To activate the 3D feature click the model. Using the cursor it is now possible to rotate, zoom, pan the model and in the model tree all segments of the model can be turned on/off or made transparent.
DOI: 10.5061/dryad.8787m/12
title: Giraffa camelopardalis_heart_70%

description: Ready to 3D print STL file of Giraffa camelopardalis heart.
DOI: 10.5061/dryad.8787m/14
title: Loxodonta africana_heart_35%

description: Ready to 3D print STL file of Loxodonta africana heart.
DOI: 10.5061/dryad.8787m/7
title: Galeorhinus galeus_head

description: Interactive PDF model of Galeorhinus galeus head. To activate the 3D feature click the model. Using the cursor it is now possible to rotate, zoom, pan the model and in the model tree all segments of the model can be turned on/off or made transparent.
DOI: 10.5061/dryad.8787m/8
title: Galeorhinus galeus_C2_250%

description: Ready to 3D print STL file of Galeorhinus galeus C2 (axis).
DOI: 10.5061/dryad.8787m/9
title: Giraffa camelopardalis_head

description: Interactive PDF model of Giraffa camelopardalis head. To activate the 3D feature click the model. Using the cursor it is now possible to rotate, zoom, pan the model and in the model tree all segments of the model can be turned on/off or made transparent.
DOI: 10.5061/dryad.933v0/1
title: Microsatellite genotypes for the 60 samples analyzed in this study.

description: Microsatellite genotypes for the 60 samples analyzed in this study.  Each microsatellite locus is presented in diploid format with the size of each allele in bp.  Missing data is noted with a -1.  Asterisks denote samples that were exact multilocus duplicates of other samples at resolved loci.  DNA#s correspond to Appendix 1.
DOI: 10.5061/dryad.bt5v6/10
title: PCA ped file

description: ped file used for PCA
DOI: 10.5061/dryad.bt5v6/11
title: PCAraw

description: raw file for PCA analysis
DOI: 10.5061/dryad.bt5v6/12
title: Ch4 alignment

description: Alignment file of Chromosome 4 sanger sequencing
DOI: 10.5061/dryad.bt5v6/13
title: Chr4 tree file

description: Mr. Bayes tree file for Chromosome 4
DOI: 10.5061/dryad.bt5v6/14
title: Ch9 alignment

description: Alignment file of Chromosome 9 sanger sequencing
DOI: 10.5061/dryad.bt5v6/7
title: DCvVintopTags

description: EdgeR output for differentially expressed genes in DC versus vineyard strains.
DOI: 10.5061/dryad.bt5v6/8
title: PCAsnps

description: VCF file containing all of the genotype data used for PCA.
DOI: 10.5061/dryad.bt5v6/9
title: PCAmap File

description: map file created for PCA.
DOI: 10.5061/dryad.c112f/1
title: Supporting data for "Control of parental investment changes plastically over time with residual reproductive value"

description: Data were collected in the laboratory. The data file was created by Microsoft Excel for Mac 2011 Version 14.5.1. Explanation for column headings; "ID_of_larval_genetic_parent" is an ID of female parents who produced the larva. "thoracic_width_of_female_parent" is a thoracic width of female parents who cared for the larva. "experimental group" is names of experimental group (group A: young parents cared for their natal offspring, B: young parents cared for foster offspring, C: old parents cared for their natal offspring, D: old parents cared for foster offspring). "parent_age" is an age of female parents used in this experiment. "relationship" is genetic relationship between parent and offspring ("related" means parents cared for natal offspring, "unrelated" means parents cared for foster offspring). "body_weight_at_120h" is a body weight of larvae at 120 h age in the first breeding attempt. "body_weight_at_120h_2" is a body weight of larvae at 120 h age in the second breeding attempt.
DOI: 10.5061/dryad.c633k/1
title: Larval cues, morphology and adult behaviour

description: Excel spreadsheets containing data for the effect of 1) larval density and 2) presence of adults during development on L3 wing vein, testis and accessory gland perimeter (all in mm), and mating duration (in min) in response to being with a rival male as an adult.
DOI: 10.5061/dryad.m0m6r/1
title: Hermsen_Gandolfo_2D_3_panels

description: Movie showing a micro-CT scan of the locule cast of Alatonucula ignis preserved in the holotype specimen (MPEF-Pb 5090A). The movie starts at the base of the locule cast and moves apically. The specimen is shown in transverse and longitudinal sections. Imaging data were acquired through the Cornell University Biotechnology Resource Center.
DOI: 10.5061/dryad.m0m6r/2
title: Hermsen_Gandolfo_2D_1_panel

description: Movie showing a micro-CT scan of the locule cast of Alatonucula ignis preserved in the holotype specimen (MPEF-Pb 5090A). The movie starts at the base of the locule cast and moves apically. The specimen is shown in transverse section. Imaging data were acquired through the Cornell University Biotechnology Resource Center.
DOI: 10.5061/dryad.m0qc8/1
title: Raw protein sequences of all identified bZIPs in six legume genomes

description: This file includes the bZIPs protein sequences from Arabidopsis thaliana and six legume genomes (Glycine max,Medicago truncatula,Cajanus cajan,Cicer arietinum,Phaseolus vulgaris and Lotus japonicus). All these proteins were used to construct phylogenetic tree which correspondence to Figure 1 and Additional file 3 of publication.
DOI: 10.5061/dryad.m0qc8/2
title: Aligned protein sequences of bZIPs from Arabidopsis thaliana and six legume genomes

description: This file includes the aligned bZIPs protein sequences from Arabidopsis thaliana and six legume genomes (Glycine max,Medicago truncatula,Cajanus cajan,Cicer arietinum,Phaseolus vulgaris and Lotus japonicus). The sequences were aligned using ClustalX 2.0. All these proteins were used to construct phylogenetic tree which correspondence to Figure 1 and Additional file 3 of publication.
DOI: 10.5061/dryad.m0qc8/3
title: The newick format of phylogenetic tree of all bZIP proteins from Arabidopsis thaliana and six legume genomes

description: The file was the tree file which was formated as .newick. The file could be opend by software MEGA to view or edit the phylogenetic tree. The tree file was correspoding to the Figure 1 and Additional file 3 in publication.
DOI: 10.5061/dryad.m88g7/1
title: Island Community Matrix

description: Datamatrix of species occurrences (presence / absence) across all 80 sampled islands in the San Juan archipelago, Washington State, USA