cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7142456
title: Sacrobosco Visual Element Dataset (S-VED)

description: The Sacrobosco Visual Elements Dataset (S-VED) is derived from 359 Sphaera editions, centered on the Tractatus de sphaera by Johannes de Sacrobosco (—1256) and printed between 1472 and 1650. The Sphaera editions were primarily used to teach geocentric astronomy to university students across Europe. Their visual elements, therefore, played an essential role in visualizing the ideas, messages, and concepts that the texts transmitted. As a precondition for studying the relation between text and visual elements, a time-consuming image labelling process was conducted as part of “The Sphere” project (https://sphaera.mpiwg-berlin.mpg.de) in order to extract and label the visual elements from the 76,000 pages of the corpus. This process resulted in the creation of the Extended Sacrobosco Visual Elements Dataset (S-VED𝑋) of which S-VED is a subset of. Due to copyright reasons only S-VED is made publicly available. S-VED consists of 4000 pages of which 2040 contain a total of 2927 visual elements. The visual elements are defined by bounding boxes and labels within a CSV file. For more information on the Sphaera corpus, feel free to check the project’s database at http://db.sphaera.mpiwg-berlin.mpg.de/.
DOI: 10.5683/sp2/g5lexg
title: DOAJ_metadata_2021_01_05_with_SKC_clean_up

description: This is a cleaned up version of the Jan. 5, 2021 Directory of Open Access Journals (DOAJ) metadata file. The file was opened in Unicode to retain non-English characters, a problem with information appearing in the wrong characters was corrected, and a second version of the publisher name column correcting many of the minor issues identified to facilitate publisher analysis was produced.
DOI: 10.6073/pasta/3380695f50e8f3527c12aba416e86b1f
title: Soil geochemistry and microbial community data from glaciated and potential glacial refugia sites in the McMurdo Dry Valleys, Antarctica (1993-2019)

description: A study was conducted to examine soil microbial communities and associated geochemical parameters at potential glacial refugia and glaciated control sites throughout the McMurdo Dry Valleys region of Antarctica. Soil samples were collected as part of ongoing long-term monitoring efforts by the McMurdo Dry Valleys Long Term Ecological Research program (MCM LTER). The oldest samples used in this study were collected during the 1993-1994 austral summer, and the newest from the 2018-2019 austral summer. "Refugia" sites were selected based on geographical positions and elevations indicative of potential glacial refugia status. Each refugia site was paired with a lower elevation "glaciated" site in the same dry valley that was not likely to have functioned as a refugium. Six replicate soils per sampling site were sequenced with 16S primers following Earth Microbiome Project protocols, filtered using the DADA2 pipeline, and clustered to amplicon sequence variant using the SILVA reference database to generate the microbial classification table included herein. Soil samples were also analyzed for various geochemical parameters as part of this study, which include P, K, NO3-, gravimetric water content, percent organic matter, pH, and electroconductivity.
DOI: 10.6084/m9.figshare.19114406.v1
title: Data and codes for Hoven et al (2022). Communications Biology

description: Contains all codes and data necessary to reproduce the results and figures reported in Hoven et al. (2022): Motivational signals disrupt metacognitive signals in the human ventromedial prefrontal cortex. Communications Biology.
DOI: 10.6084/m9.figshare.21377907
title: Supplementary Material for: MCPIP-1-Mediated Immunosuppression of Neutrophils Exacerbates Acute Bacterial Peritonitis and Liver Injury

description: Monocyte chemotactic protein-1-induced protein-1 (MCPIP-1) is highly expressed in activated immune cells and negatively regulates immune responses, while the mechanisms underlying the immunoregulation of neutrophils in acute bacterial infection and liver injury remain elusive. Here, we examined the role of MCPIP-1 in regulating neutrophil functions during acute bacterial peritonitis and liver injury. Mice with myeloid cell-specific overexpression (<i>Mcpip</i><sup>Mye-tg</sup>) or knockout (<i>Mcpip</i><sup>ΔMye</sup>) of MCPIP-1 were generated. We found that reactive oxygen species and myeloperoxidase production, formation of neutrophil extracellular traps, and migratory capacity were deficient in <i>Mcpip</i><sup>Mye-tg</sup> neutrophils but enhanced in <i>Mcpip</i><sup>ΔMye</sup> neutrophils. The recruitment of neutrophils and pathogen clearance were markedly suppressed in <i>Mcpip</i><sup>Mye-tg</sup> mice following intraperitoneal infection with <i>Salmonella typhimurium</i> while intensified in <i>Mcpip</i><sup>ΔMye</sup> mice. Severe acute <i>S. typhimurium</i>-infected peritonitis and liver injury occurred in <i>Mcpip</i><sup>Mye-tg</sup> mice but were alleviated in <i>Mcpip</i><sup>ΔMye</sup> mice. RNA sequencing, RNA-binding protein immunoprecipitation and qPCR analysis revealed that MCPIP-1 downregulated the protective functions of neutrophils via degrading the mRNA of cold inducible RNA-binding protein. Consistently, MCPIP-1 was highly expressed in neutrophils of patients with acute infectious diseases, especially in those with liver injury. Collectively, we uncover that MCPIP-1 negatively regulates the antibacterial capacities of neutrophils, leading to exacerbating severe acute bacterial peritonitis and liver injury. It may serve as a candidate target for maintaining neutrophil homeostasis to control acute infectious diseases.
DOI: 10.17632/9xxrp5kmy5.1
title: Data for: Dynamics of sediments in reservoir inflows: a case study of the Skalka and Nechranice reservoirs, Czech Republic

description: Raw data used as the input for the analyses within the paper - bathymetry data (sonar), ground penetration radar, sub-bottom profiler, elevation data derived from processed old maps and processed photogrammetric data and LiDAR data. Metadata for each file included. Due to the size of the data - they were split into a multiple archive (all files must be downloaded)
DOI: 10.21335/nmdc-1093031037
title: Ocean currents, hydrography and microstructure data from PROVOLO cruises

description: Data from three PROVOLO cruises conducted to the Lofoten Basin of the Norwegian Sea:
- Cruise HM2016611, R.V. Haakon Mosby, 26 May-15 June 2016
- Cruise KB2017606, R.V. Kristine Bonnevie, 10-24 March 2017
- Cruise HB2017618, R.V. Kristine Bonnevie, 2-15 September 2017

PROVOLO (Watermass transformation processes and vortex dynamics in the
Lofoten Basin of the Norwegian Sea) is led at the Geophysical Institute,
University of Bergen (PI: Ilker Fer) and is funded by the Research Council
of Norway (project number 250784) for the period 01.01.2016-31.12.2019
to describe and quantify the processes and pathways of energy transfer
and mixing in the Lofoten Basin and their role in water mass transformation.

The cruise data set is organized in four files, categorized by the instrument and data type, 
and includes merged data from all three cruises as follows:
PROVOLO_CTD: Shipboard salinity, temperature and density profiles
PROVOLO_SADCP: Current profiles from vessel-mounted acoustic Doppler current profilers
PROVOLO_LADCP: Current profiles from lowered acoustic Doppler current profilers
PROVOLO_VMP: Ocean microstructure profiles

The summary and comments sections of each file have a descrpton of the corresponding data set.
Further details on the processing, an overview of the data,  and a detailed list of stations are
provided in the attached cruise reports.
DOI: 10.5281/zenodo.6838169
title: Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma

description: <strong>- melanoma_IMC_data.zip</strong> The zip file contains the raw IMC images (in the raw_tiff folder) and corresponding single cell masks (in the mask folder) associated with the paper "Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma". The MCD files by CyTOF IMC were exported to a multi-channel TIFF file including 41 channels, and the order of the channel was provided in the <strong>Melanoma_panel.csv</strong>. <strong>- Melanoma_code_data.zip</strong> The zip file contains the 4 folders described as follows: Folder ”data“: the processed data for the result shown in paper<br> - Folder "input": <br> - sc_data.csv: the single cell protein expression data;<br> - Folder "abundance": the cell type abundance files;<br> - Folder "clidata": the response and survival data for 4 melanoma datasets used in the paper; <br> - Folder "hc_result": TME archetypes annotation for each sample/ROI from hierarchical clustering;<br> - Folder "ICB": data for ICB analysis (presented in FigS3);<br> - Folder "meta": panel file for clustering;<br> - Folder "RNAseq_data": the RNAseq data for 4 melanoma datasets used in the paper;<br> - Folder "RNAseq_deconv": the result of cell type deconvolution from bulk RNAseq; <br> - Folder "spatial": data for neighbourhood analysis (presented in Fig3, FigS4).<br> - Folder "output": intermediate result for analysis. Folder "Rscript": R scripts for reproducing results in the paper.<br> - generate_Figs.Rmd: ploting figures presented in the paper;<br> - functions.R: functions used for analysis;<br> - Clustering.Rmd: determining cell types based on marker intensities;<br> - Spatial_analysis.Rmd: neighbourhood analysis to get significant interction/avoidance cell relationships. Folder "Figs": figures presented in paper. Folder "HE_figs": the H&E image and the ROIs distribution for each sample.
DOI: 10.6084/m9.figshare.14603883.v1
title: Raw data on the development of Diaphorina communis on mandarin and curry leaf under field and laboratory conditions in 2014

description: This dataset provides the number of live adults, eggs and nymphs of <i>Diaphorina communis</i> on seedlings of mandarin and curry leaf during the experiment on acquisition and transmission of ‘<i>Candidatus </i>liberibacter asiaticus’ by <i>D. communis</i>, and the number of second-generation adults of <i>D. communis</i> on mandarin and curry leaf in the choice and no choice experiment in 2014 in the article <b><i>Diaphorina communis</i>: molecular identification, development on <i>Citrus reticulata</i>, and acquisition and transmission of ‘<i>Candidatus</i> Liberibacter asiaticus’.</b><br><br><br>
DOI: 10.20375/0000-000e-6805-8
title: KriPoZ Junges Publizieren (JuP) - Strafrecht im Zeitalter von Digitalisierung und Datafizierung (Sammelband)
DOI: 10.5281/zenodo.5139890
title: Data from article "Sea-level rise in Venice: historic and future trends (review article)"

description: Data from the article Zanchettin D., et al.: Sea-level rise in Venice: historic and future trends (review article), Nat. Hazards Earth Syst. Sci., 21, 1–35, 2021, https://doi.org/10.5194/nhess-21-1-2021 The dataset contains: - Historical tide gauge data for Venice (relative sea level, or RSL, and RSL corrected for vertical land movement) for the winter (JFM) and autumn (OND) seasons. - sea-level projections for Venice for the RCP2.6, the RCP8.5 and a high-end scenario.
description: {"references": ["Zanchettin D., et al.:\u00a0Sea-level rise in Venice: historic and future trends (review article),\u00a0Nat. Hazards Earth Syst. Sci., 21, 1\u201335, 2021, https://doi.org/10.5194/nhess-21-1-2021"]}
DOI: 10.5281/zenodo.6873690
title: Probabilistic forecasts of the daily maximum of the Kp index produced by the SERENADE prototype model and three empirical models for the period 2010-2018

description: This dataset contains the probabilistic outputs of SERENADE's first prototype model dedicated to the forecasting of the \(\textit{Kp}_{\textrm{max, 24 h}}\) index for forecasting horizons ranging between 2 and 7 days. The period covered is the one of the SDOML dataset, which is 2010-05 --- 2018-12. All data is contained in a single pickle file, that can be opened in Python, using the following code lines: \(\texttt{import pickle}\\ \texttt{with open(DATA_PATH+`/serenade_outputs.pkl', `rb') as f:}\\ ~~~~\texttt{dict_outputs = pickle.load(f)}\) The pickle file contains a dictionnary, which itself contains Pandas DataFrames. Each DataFrame corresponds to a forecasting horizon. The dictionnary's keys are the forecasting horizons stored as strings, that is: \(\texttt{dict_output.keys() = [`2',`3',`4',`5',`6',`7']}\) The DataFrames are indexed by datetime. They contain the observed (true) hourly values of the daily maximum of the Kp index, the forecasts provided by SERENADE and three baseline models (Climatology model, Persistence model and 27-day Recurrence model). The forecast values include the mean and the standard deviation of the forecast normal distributions. Missing moments are due to the absence of EUV images needed to provide the forecast at the given moment.
DOI: 10.5281/zenodo.7054827
title: Experimental single-setting quantum state tomography

description: Source data underlying the graphical representations used in the figures.
DOI: 10.5281/zenodo.7059739
title: Data from article "Is the Atlantic a Source for Decadal Predictability of Sea-Level Rise in Venice?"

description: Data from the article Zanchettin D., et al.: Is the Atlantic a Source for Decadal Predictability of Sea-Level Rise in Venice?, Earth and Space Science, article number 2022EA002494 The dataset contains: - annual time series of October-March average of relative sea level in Venice corrected for vertical land movement (VLMcorrectedRSL) with associated standard error of the mean (LMcorrectedRSL_SEM) for the period 1873-2019; - annual time series of estimate of subsidence in Venice (Subsidence) for the period 1873-2019 - modeled state of Venice sea level with associated uncertainty, provided as mean (delta_mean), 1st percentile (delta_1_percentile) and 99th percentile (delta_99_percentile), for the period 1873-2019 - modeled local stochastic trend of Venice sea level with associated uncertainty, provided as mean (beta_mean), 1st percentile (beta_1_percentile) and 99th percentile (beta_99_percentile), for the period 1873-2019
description: {"references": ["Zanchettin, D., S. Rubinetti, and A. Rubino, Is the Atlantic a Source for Decadal Predictability of Sea-Level Rise in Venice?, Earth and Space Science, 2022, Paper #2022EA002494", "Zanchettin, D., Bruni, S., Raicich, F., Lionello, P., Adloff, F., Androsov, A., Antonioli, F., Artale, V., Carminati, E., Ferrarin, C., Fofonova, V., Nicholls, R. J., Rubinetti, S., Rubino, A., Sannino, G., Spada, G., Thi\u00e9blemont, R., Tsimplis, M., Umgiesser, G., Vignudelli, S., W\u00f6ppelmann, G., & Zerbini, S. (2021), Sea-level rise in Venice: historic and future trends (review article), Nat. Hazards Earth Syst. Sci., 21, 2643\u20132678, https://doi.org/10.5194/nhess-21-2643-2021", "Zanchettin, D., Bruni, S., Thi\u00e9blemont, R., & Rubinetti, S. (2021), Data from article \"Sea-level rise in Venice: historic and future trends (review article)\", Zenodo [data set], https://doi.org/10.5281/zenodo.5139890"]}
DOI: 10.5286/isis.e.rb2000211
title: ISIS@MACH - Neutron Spectroscopy of leather artefacts from Museo Egizio (TOSCA)

description: Within the Museo Egizio collection there are 200 precious and unique leather artefacts belonging to different historical periods including the Old Kingdom, New Kingdom, Roman and Byzantine eras. Leather materials were used in everyday applications, subject to hard use and harsh environmental conditions. Here we propose to study the structure, dynamics and elemental composition of leather artefacts spanning from the Old Kingdom to the Byzantine Period and including samples from the intact tomb of Kha (around 1400 BC) that document an extensive crystallization phenomenon. The experimental investigation will be performed using Inelastic Neutron Scattering (INS) on TOSCA and Time of Flight – Prompt Gamma Activation Analysis (T-PGAA) on VESUVIO beamlines at ISIS pulsed neutron and muon source, through the Neutron Gate of ISIS@MACH.
DOI: 10.5291/ill-data.crg-2868
title: Exploring the link between interface coupling and the magnetisation profile in V2O3/Ni magnetic heterostructures
DOI: 10.6084/m9.figshare.20348031
title: One clone to rule them all: Culture-independent genomics of Chlamydia psittaci from equine and avian hosts in Australia

description: Supplementary Material for ‘One clone to rule them all: Culture-independent genomics of Chlamydia psittaci from equine and avian hosts in Australia’, as published in Microbial Genomics.
DOI: 10.14459/2022mp1686542
title: Rusty Clusters? Dusting an IPv6 Research Foundation

description: Evaluation and extension of the IPv6 Hitlist service. The data contains measurement input and output files with Jupyter notebooks and scripts used for analyses. It covers detailed analyses of new sources, aliased prefixes and the impact of the Great Firewall of China on the service.
DOI: 10.14459/2022mp1687221
title: Analyzing Real-time Video Delivery over Cellular Networks for Remote Piloting Aerial Vehicles

description: The repository holds the measurement results that were published in "Analyzing Real-time Video Delivery over Cellular Networks for Remote Piloting Aerial Vehicles", IMC'22. The dataset contains the sent and received videos, LTE logs, packet traces and video application logs.
DOI: 10.5281/zenodo.5824568
title: MICCAI 2021 MSSEG-2 challenge demographics data

description: This dataset will include all demographics and dataset constitution information for the MICCAI 2021 challenge.
DOI: 10.3886/icpsr03192.v1
title: Census of Population and Housing, 2000 [United States]: Profiles of General Demographic Characteristics
title: Version 1

description: The Profiles of General Demographic Characteristics data are released as individual files for each of the 50 states, the District of Columbia, and Puerto Rico, as well as for all 50 states combined (Part 61) and for the entire United States (Part 60). The files contain the 100-percent data, which is the information compiled from questions asked of all people and about every housing unit. The population items include sex, age, race, Hispanic or Latino, household relationship, household type, group quarters population, housing occupancy, and housing tenure. The profiles include a total of 71 population and 25 housing data items.
description: Datasets: 
 
 DS0: Study-Level Files 
 DS1: Alabama 
 DS2: Alaska 
 DS4: Arizona 
 DS5: Arkansas 
 DS6: California 
 DS8: Colorado 
 DS9: Connecticut 
 DS10: Delaware 
 DS11: District of Columbia 
 DS12: Florida 
 DS13: Georgia 
 DS15: Hawaii 
 DS16: Idaho 
 DS17: Illinois 
 DS18: Indiana 
 DS19: Iowa 
 DS20: Kansas 
 DS21: Kentucky 
 DS22: Louisiana 
 DS23: Maine 
 DS24: Maryland 
 DS25: Massachusetts 
 DS26: Michigan 
 DS27: Minnesota 
 DS28: Mississippi 
 DS29: Missouri 
 DS30: Montana 
 DS31: Nebraska 
 DS32: Nevada 
 DS33: New Hampshire 
 DS34: New Jersey 
 DS35: New Mexico 
 DS36: New York 
 DS37: North Carolina 
 DS38: North Dakota 
 DS39: Ohio 
 DS40: Oklahoma 
 DS41: Oregon 
 DS42: Pennsylvania 
 DS44: Rhode Island 
 DS45: South Carolina 
 DS46: South Dakota 
 DS47: Tennessee 
 DS48: Texas 
 DS49: Utah 
 DS50: Vermont 
 DS51: Virginia 
 DS53: Washington 
 DS54: West Virginia 
 DS55: Wisconsin 
 DS56: Wyoming 
 DS60: United States 
 DS61: All States 
 DS72: Puerto Rico
description: Census of Population and Housing, 2000 [United States] Series
description: The data items are identical in each of the files, but the geographic coverage differs. The Summary Level Sequence Chart on page 2-1 of the codebook outlines the hierarchical and inventory geographic summaries in their entirety.
The part numbers are not consecutive. They correspond to the FIPS codes for states.
description: All persons and housing units in the United States in 2000.
DOI: 10.4121/21197290.v1
title: Data underlying the paper: Temporally programmed polymer-solvent interactions using a chemical reaction network

description: The data underlines the paper: <strong>Temporally programmed polymer-solvent interactions using a chemical reaction network</strong>. In this work a new modular chemical reaction network (CRN) was developed, which enables reversible formation of positive charges on a tertiary amine substrate, which are removed using nucleophilic signals that control the deactivation kinetics. The modular nature of the CRN enables incorporation in diverse polymer materials, leading to a temporally programmed transition from collapsed and hydrophobic to solvated, hydrophilic polymer chains by controlling polymer-solvent interactions. Depending on the layout of the CRN, we can create stimuli-responsive or autonomously responding materials.
DOI: 10.5281/zenodo.5103051
title: Acorn worm ossicle ultrastructure and composition and the origin of the Echinoderm skeleton

description: The excel.data file with ossicle size measurement used to get the mean sizes and supplementary Fig. 2. Raw Raman spectra and R code used to determinate the polymorph of enteropneusts calcium carbonate ossicles, and make Fig. 3
DOI: 10.5281/zenodo.5775523
title: MICCAI 2021 MSSEG-2 challenge quantitative results

description: This dataset includes all quantitative results of all metrics for challengers of the MICCAI MSSEG2 2021 challenge on new MS lesions detection. It also includes the ranking excel file obtained on the challenge day. Please refer to the README for more details. Second version adds missing SNAC team results and ITU team results update. Third version provides corrected results after correction of ground truth.
DOI: 10.5281/zenodo.6744097
title: Monte Carlo ray tracing code and simulations for photons scattered by an optically thin slab

description: This directory contains code and data used to simulate photon path length distributions in an optically thin slab.<br> This material was used to prepare the manuscript "Photon Path Distributions in Optically Thin Slabs" by Quentin Libois and Anthony B. Davis, submitted to Optics Express
DOI: 10.5286/isis.e.rb2000210
title: ISIS@MACH - Neutron Spectroscopy of leather artefacts from Museo Egizio (VESUVIO)

description: Within the Museo Egizio collection there are 200 precious and unique leather artefacts belonging to different historical periods including the Old Kingdom, New Kingdom, Roman and Byzantine eras. Leather materials were used in everyday applications, subject to hard use and harsh environmental conditions. Here we propose to study the structure, dynamics and elemental composition of leather artefacts spanning from the Old Kingdom to the Byzantine Period and including samples from the intact tomb of Kha (around 1400 BC) that document an extensive crystallization phenomenon. The experimental investigation will be performed using Inelastic Neutron Scattering (INS) on TOSCA and Time of Flight – Prompt Gamma Activation Analysis (T-PGAA) on VESUVIO beamlines at ISIS pulsed neutron and muon source, through the Neutron Gate of ISIS@MACH.
DOI: 10.5291/ill-data.5-31-2833
title: Characterisation of the magnetic compound Mn2Co3Ge
DOI: 10.6084/m9.figshare.20339073.v2
title: Genomic and phylogenomic insights into the family Streptomycetaceae lead to the proposal of six novel generaGenomic and phylogenomic insights into the family Streptomycetaceae lead to the proposal of six novel genera

description: Table S1 Table S2 Table S3 Table S4 Table S5 Figure S1
DOI: 10.6084/m9.figshare.6863780
title: Malaria Incidents by Municipalities

description: Malaria incidents by municipality from 2007 to 2015 for species: <i>Plasmodium falciparum </i>and<i> Plasmodium vivax.</i>
DOI: 10.17632/jrmbps8ty5.1
title: Proteomic fertility markers in ram sperm

description: Sperm protein profiles
DOI: 10.17632/dkypt3rpcy.1
title: RAW DATA BACE1

description: The dataset contains clinical (diagnosis and MMSE) and biochemical data (levels of BACE1 activity) of patients and healthy controls used to investigate the role of BACE1 as a possible biomarker of AD.