cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/21648329.v1
title: Data underlying the study on Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts

description: These data relate to the manuscript Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts. The uploaded files contains the experimental data and their processingof the figures used in the manuscript. <br> <em>Saccharomyces pastorianus</em> is not a classical taxon, it is an interspecific hybrid resulting from the cross of <em>Saccharomyces cerevisiae</em> and <em>Saccharomyces eubayanus</em>. Exhibiting heterosis for phenotypic traits as wort a-oligosacharides consumption and fermentation at low temperature, it has been domesticated to become the main work-horse of the brewing industry. Although CRISPR-Cas9 has been shown to be functional in <em>S. pastorianus</em>, repair of CRISPR induced double strand break is unpredictable and preferentially uses the homoeologous chromosome as template preventing targeted introduction of the desired repair construct. Here, we demonstrate that lager hybrids can be edited with near 100% efficiency at carefully selected landing sites on the chimeric <em>SeSc</em>CHRIII. The landing sites were systematically selected and evaluated for i) absence of loss of heterozygosity upon CRISPR-editing, ii) efficiency of the gRNA, and iii) absence of effect on strain physiology. Successful examples of highly efficient single and double genes integration illustrated that genome editing can be applied in interspecies hybrids paving the way to a new impulse to lager yeast strain development.
DOI: 10.4121/21648329
title: Data underlying the study on Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts

description: These data relate to the manuscript Improving CRISPR-Cas9 mediated genome integration in interspecific hybrid yeasts. The uploaded files contains the experimental data and their processingof the figures used in the manuscript. <br> <em>Saccharomyces pastorianus</em> is not a classical taxon, it is an interspecific hybrid resulting from the cross of <em>Saccharomyces cerevisiae</em> and <em>Saccharomyces eubayanus</em>. Exhibiting heterosis for phenotypic traits as wort a-oligosacharides consumption and fermentation at low temperature, it has been domesticated to become the main work-horse of the brewing industry. Although CRISPR-Cas9 has been shown to be functional in <em>S. pastorianus</em>, repair of CRISPR induced double strand break is unpredictable and preferentially uses the homoeologous chromosome as template preventing targeted introduction of the desired repair construct. Here, we demonstrate that lager hybrids can be edited with near 100% efficiency at carefully selected landing sites on the chimeric <em>SeSc</em>CHRIII. The landing sites were systematically selected and evaluated for i) absence of loss of heterozygosity upon CRISPR-editing, ii) efficiency of the gRNA, and iii) absence of effect on strain physiology. Successful examples of highly efficient single and double genes integration illustrated that genome editing can be applied in interspecies hybrids paving the way to a new impulse to lager yeast strain development.
DOI: 10.4121/22210771.v1
title: Evolutionary Game Analysis of Vehicle Procurement in the Courier Industry from the Perspective of Green Supply Chain

description: In order to study the three parties of government, courier enterprises and suppliers for new energy vehicle related decisions, thus the tripartite evolutionary model constructed to analyze the relevant factors and promote the green transformation of the courier industry supply chain. The data contains the code to run MATLAB and the graph of running results
DOI: 10.4121/22210771
title: Evolutionary Game Analysis of Vehicle Procurement in the Courier Industry from the Perspective of Green Supply Chain

description: In order to study the three parties of government, courier enterprises and suppliers for new energy vehicle related decisions, thus the tripartite evolutionary model constructed to analyze the relevant factors and promote the green transformation of the courier industry supply chain. The data contains the code to run MATLAB and the graph of running results
DOI: 10.4121/17708117
title: Data underlying the publication: Forage quality in grazing lawns and tall grasslands in the subtropical region of Nepal and implications for wild herbivores.

description: We randomly laid down 1 m × 1 m quadrats with equally spaced grids of 10 cm × 10 cm in both the grazing lawns and tall grasslands. We laid down a total of 160 quadrats (eight in each sampling site) and recorded bare ground, litter, animal droppings and vegetation. Within each quadrat, we used the point intercept method at 100 sampling points to assess the percentage cover of the different plant species. We only used vegetation hits for calculating the Shannon-Wiener diversity index and species richness. We used grid corners as the point to record the hits. We measured grass height at three random points within each 1 m × 1 m quadrat with a ruler to 0.5 cm precision. We chose three different points in different direction within a quadrat to measure the grass height. We assessed grazing intensity by visually estimating the bite marks within a quadrat at a scale from 0 to 3 [i.e., 0 – not grazed, 1 – lightly grazed, up to 25% of quadrat area grazed; 2 – moderately grazed, (up to 50% grazed), and 3 – heavily grazed ( more than 50% grazed)]. We clipped the vegetation at ground level in a 20 × 20 cm frame in the centre of each quadrat and determined fresh weight using a digital weighing scale [with a capacity of 600 g and accuracy of 0.5 mg; Brand: Equal (class II)] immediately after clipping. We hand-sorted the samples into green leaf, green stem, dry leaf and dry stem which were subsequently dried in the shade at ambient temperature (~30 °C) for five days until air-dry before recording the air-dry weight. Air-dried samples of green leaf and green stem were stored in paper bags for separate chemical analyses. We collected soil subsamples from each quadrat. The soil samples (n = 20) were placed in airtight zip-lock plastic bags for chemical analyses. The dataset (file name: GrazingLawns_TallGrasslands_BardiaNP_Nepal.xlsx) contains three sheets: Sheet 1(veg_count_data) contains record of the grass species observed from 10 cm x 10 cm frame within a 1 m x 1m quadrat. Zero indicated – no record of species. Sheet 2 (Physical_chemical_prop) contains information on grass physical properties (height, biomass, bulk density, proportion of green leaf and stem) and soil chemical properties (soil pH, soil moisture, soil organic matter, soil nitrogen and soil phosphorus). Sheet 3 (Label) contains description for the variables mentioned in sheet 1 & 2.
DOI: 10.4121/17708117.v1
title: Data underlying the publication: Forage quality in grazing lawns and tall grasslands in the subtropical region of Nepal and implications for wild herbivores.

description: We randomly laid down 1 m × 1 m quadrats with equally spaced grids of 10 cm × 10 cm in both the grazing lawns and tall grasslands. We laid down a total of 160 quadrats (eight in each sampling site) and recorded bare ground, litter, animal droppings and vegetation. Within each quadrat, we used the point intercept method at 100 sampling points to assess the percentage cover of the different plant species. We only used vegetation hits for calculating the Shannon-Wiener diversity index and species richness. We used grid corners as the point to record the hits. We measured grass height at three random points within each 1 m × 1 m quadrat with a ruler to 0.5 cm precision. We chose three different points in different direction within a quadrat to measure the grass height. We assessed grazing intensity by visually estimating the bite marks within a quadrat at a scale from 0 to 3 [i.e., 0 – not grazed, 1 – lightly grazed, up to 25% of quadrat area grazed; 2 – moderately grazed, (up to 50% grazed), and 3 – heavily grazed ( more than 50% grazed)]. We clipped the vegetation at ground level in a 20 × 20 cm frame in the centre of each quadrat and determined fresh weight using a digital weighing scale [with a capacity of 600 g and accuracy of 0.5 mg; Brand: Equal (class II)] immediately after clipping. We hand-sorted the samples into green leaf, green stem, dry leaf and dry stem which were subsequently dried in the shade at ambient temperature (~30 °C) for five days until air-dry before recording the air-dry weight. Air-dried samples of green leaf and green stem were stored in paper bags for separate chemical analyses. We collected soil subsamples from each quadrat. The soil samples (n = 20) were placed in airtight zip-lock plastic bags for chemical analyses. The dataset (file name: GrazingLawns_TallGrasslands_BardiaNP_Nepal.xlsx) contains three sheets: Sheet 1(veg_count_data) contains record of the grass species observed from 10 cm x 10 cm frame within a 1 m x 1m quadrat. Zero indicated – no record of species. Sheet 2 (Physical_chemical_prop) contains information on grass physical properties (height, biomass, bulk density, proportion of green leaf and stem) and soil chemical properties (soil pH, soil moisture, soil organic matter, soil nitrogen and soil phosphorus). Sheet 3 (Label) contains description for the variables mentioned in sheet 1 & 2.
DOI: 10.4121/19690684.v1
title: Runoff, erosion and pesticide transport in a small catchment in Limburg - The Netherlands

description: The main data in this dataset are observed rainfall runoff events. During this events runoff, erosion and related pesticide concentrations in the particulate and dissolved phase are measured. For each runoff event timeseries are available of measured discharge (1 minute interval), suspended sediment (5 minute interval) and pesticide concentrations in both phases. In addition, we collected data from field observations and interviews with land managers, data is available on pesticide applications and concentrations of pesticides in soil.
DOI: 10.4121/22202389.v1
title: Data underlying the master thesis: Tradable Mobility Credits for Long-Distance Travel in Europe – Impacts on the Modal Split between Air, Rail and Car

description: Long-distance travels cause a large share of total greenhouse gas emissions. Environmental policy instruments aim to direct people’s travel behaviour, but at present, they are not sufficiently effective. As an alternative to existing policies, there is growing attention to market-based pricing instruments. Such an innovative policy instrument is the Tradable Mobility Credit Scheme (TMC). It allows for the direct internalisation of externalities into the price of mobility. This study specifies a TMC which shall be internationally implemented in Europe. The objective of the study is to estimate the impact of such a TMC on the modal split for long-distance leisure travel in Europe. Therefore, first, a mode choice model is created to estimate the current modal split of long-distance routes in Europe. Second, the TMC is incorporated into the mode choice model, and the modal split under TMC is estimated. A case study with 73 European cities and 2,998 OD-pair connections is conducted. Flight and train ticket prices are obtained by web scraping. The dataset includes the Python TMC mode choice model, raw data (flight and train ticket prices collected by web scraping) and output data. The output data includes both the output assuming inelastic demand and the output assuming elastic demand.
DOI: 10.4121/22202389
title: Data underlying the master thesis: Tradable Mobility Credits for Long-Distance Travel in Europe – Impacts on the Modal Split between Air, Rail and Car

description: Long-distance travels cause a large share of total greenhouse gas emissions. Environmental policy instruments aim to direct people’s travel behaviour, but at present, they are not sufficiently effective. As an alternative to existing policies, there is growing attention to market-based pricing instruments. Such an innovative policy instrument is the Tradable Mobility Credit Scheme (TMC). It allows for the direct internalisation of externalities into the price of mobility. This study specifies a TMC which shall be internationally implemented in Europe. The objective of the study is to estimate the impact of such a TMC on the modal split for long-distance leisure travel in Europe. Therefore, first, a mode choice model is created to estimate the current modal split of long-distance routes in Europe. Second, the TMC is incorporated into the mode choice model, and the modal split under TMC is estimated. A case study with 73 European cities and 2,998 OD-pair connections is conducted. Flight and train ticket prices are obtained by web scraping. The dataset includes the Python TMC mode choice model, raw data (flight and train ticket prices collected by web scraping) and output data. The output data includes both the output assuming inelastic demand and the output assuming elastic demand.
DOI: 10.4121/22193944
title: Data underlying the publication: Stabilisation of the fatty acid decarboxylase from Chlorella variabilis by caprylic acid

description: The dataset here is complementary to the corresponding manuscript (chapter) and its supporting information. Raw data (i.e. pictures, chromatography, etc) for the figures and tables shown in the paper/thesis chapter could be found in this dataset. Each experiment was performed with different research objective, type of research and method of data collection. For more information, please go to README file. <br> <br>
DOI: 10.4121/22193944.v1
title: Data underlying the publication: Stabilisation of the fatty acid decarboxylase from Chlorella variabilis by caprylic acid

description: The dataset here is complementary to the corresponding manuscript (chapter) and its supporting information. Raw data (i.e. pictures, chromatography, etc) for the figures and tables shown in the paper/thesis chapter could be found in this dataset. Each experiment was performed with different research objective, type of research and method of data collection. For more information, please go to README file. <br> <br>
DOI: 10.4121/22193554.v1
title: Data underlying the publication: An alginate-confined peroxygenase-CLEA for styrene epoxidation

description: The dataset here is complementary to the corresponding manuscript (chapter) and its supporting information. Raw data (i.e. pictures, chromatography, etc) for the figures and tables shown in the paper/thesis chapter could be found in this dataset. Each experiment was performed with different research objective, type of research and method of data collection. For more information, please go to README file.
DOI: 10.4121/21940367.v1
title: Data and Software underlying the research of: Microphones as Airspeed Sensors for Unmanned Aerial Vehicles

description: This contains the data used to train and validate models created as part of the research project: Microphones as Airspeed Sensors for Unmanned Aerial Vehicles. The research objective is to evaluate the feasibility of the concept of estimating the airspeed of a vehicle using the power spectral density of the recorded wall pressure fluctuations on the vehicle's surface. The data was collected by performing practical experiments and it is in the form of the recorded microphones' voltage signal. Included is the data gathered from both the wind tunnel and flight experiments, the datasets organized as used for the trainign and validation of the models, as well as the response curve of the microphones used (Sonion 8002). Lastly, the trained models are also added. <br> <br>
DOI: 10.4121/22193554
title: Data underlying the publication: An alginate-confined peroxygenase-CLEA for styrene epoxidation

description: The dataset here is complementary to the corresponding manuscript (chapter) and its supporting information. Raw data (i.e. pictures, chromatography, etc) for the figures and tables shown in the paper/thesis chapter could be found in this dataset. Each experiment was performed with different research objective, type of research and method of data collection. For more information, please go to README file.
DOI: 10.4121/21940367
title: Data and Software underlying the research of: Microphones as Airspeed Sensors for Unmanned Aerial Vehicles

description: This contains the data used to train and validate models created as part of the research project: Microphones as Airspeed Sensors for Unmanned Aerial Vehicles. The research objective is to evaluate the feasibility of the concept of estimating the airspeed of a vehicle using the power spectral density of the recorded wall pressure fluctuations on the vehicle's surface. The data was collected by performing practical experiments and it is in the form of the recorded microphones' voltage signal. Included is the data gathered from both the wind tunnel and flight experiments, the datasets organized as used for the trainign and validation of the models, as well as the response curve of the microphones used (Sonion 8002). Lastly, the trained models are also added. A README file describing the contents and use of the files and definition of the used abbreviations and as well as the units of the parameeters are also included. <br> <br>
DOI: 10.4121/21940367.v2
title: Data and Software underlying the research of: Microphones as Airspeed Sensors for Unmanned Aerial Vehicles

description: This contains the data used to train and validate models created as part of the research project: Microphones as Airspeed Sensors for Unmanned Aerial Vehicles. The research objective is to evaluate the feasibility of the concept of estimating the airspeed of a vehicle using the power spectral density of the recorded wall pressure fluctuations on the vehicle's surface. The data was collected by performing practical experiments and it is in the form of the recorded microphones' voltage signal. Included is the data gathered from both the wind tunnel and flight experiments, the datasets organized as used for the trainign and validation of the models, as well as the response curve of the microphones used (Sonion 8002). Lastly, the trained models are also added. A README file describing the contents and use of the files and definition of the used abbreviations and as well as the units of the parameeters are also included. <br> <br>
DOI: 10.4121/21856329.v1
title: Dataset used for a study on the financial feasibility of offshore mussel farming using the SMART approach (Revised)

description: This is a revised dataset that was used for a study on the financial feasibility of offshore mussel farming using the Smart farm approach. We approached numerous entities (both governmental and business) to generate this data. This data demonstrates that offshore mussel farming in the Dutch North Sea using the Smart approach can be meaningfully profitable. Original dataset: https://doi.org/10.4121/21511107.v1
DOI: 10.4121/21856329
title: Dataset used for a study on the financial feasibility of offshore mussel farming using the SMART approach (Revised)

description: This is a revised dataset that was used for a study on the financial feasibility of offshore mussel farming using the Smart farm approach. We approached numerous entities (both governmental and business) to generate this data. This data demonstrates that offshore mussel farming in the Dutch North Sea using the Smart approach can be meaningfully profitable. Original dataset: https://doi.org/10.4121/21511107.v1
DOI: 10.4121/22182607.v1
title: Data and code belonging to "Effect of acetic acid release and pH on lignocellulosic biomass conversion by liquid hot water pretreatment "

description: This dataset is an integral part of the study "Effect of acetic acid release and pH on lignocellulosic biomass conversion by liquid hot water pretreatment ", for which a manuscript is ready for submission for publication. This study used partly already published experimental data for a model-based description of the system of study, and partly generated new experimental data. The following files contain details of the models and experiments such as described in the manuscript: Referring to the paper to which these data and code belong: <br> 1. Excel file "Figures_2_3_4.xlsx" generates Figures 2, 3 and 4. 2. Matlab file "Temperature_fitting_figure_1.m" generates Figure 1. 3. Matlab file "Final_pH_from_C0_KB.m” is used to generate Figure 2. 4. Matlab file “Kinetic_parameter_regression_autocatalytic.m” is used to generate Figure 3. 5. Matlab file “Kinetic_parameter_regression_not_ autocatalytic.m” is used to generate Figure 3. 6. Matlab file “Progress_curve_180_oC_typical exp.m” is used to generate Figure 4. 7. Excel file “Experimental_data_sorted” is called by items 3, 4 and 5. 8. Excel file “Experimental_data_180oC_1exp” is called by item 6. 9. Excel file “Experimental data with HAc initially added” contains source data for Tables 2 and 3, and Figure 6. 10. Text file “Supplementary Materials text file.pdf” contains minor calculations mentioned in Section 2 of the paper. <br>
DOI: 10.4121/22182607
title: Data and code belonging to "Effect of acetic acid release and pH on lignocellulosic biomass conversion by liquid hot water pretreatment "

description: This dataset is an integral part of the study "Effect of acetic acid release and pH on lignocellulosic biomass conversion by liquid hot water pretreatment ", for which a manuscript is ready for submission for publication. This study used partly already published experimental data for a model-based description of the system of study, and partly generated new experimental data. The following files contain details of the models and experiments such as described in the manuscript: Referring to the paper to which these data and code belong: <br> 1. Excel file "Figures_2_3_4.xlsx" generates Figures 2, 3 and 4. 2. Matlab file "Temperature_fitting_figure_1.m" generates Figure 1. 3. Matlab file "Final_pH_from_C0_KB.m” is used to generate Figure 2. 4. Matlab file “Kinetic_parameter_regression_autocatalytic.m” is used to generate Figure 3. 5. Matlab file “Kinetic_parameter_regression_not_ autocatalytic.m” is used to generate Figure 3. 6. Matlab file “Progress_curve_180_oC_typical exp.m” is used to generate Figure 4. 7. Excel file “Experimental_data_sorted” is called by items 3, 4 and 5. 8. Excel file “Experimental_data_180oC_1exp” is called by item 6. 9. Excel file “Experimental data with HAc initially added” contains source data for Tables 2 and 3, and Figure 6. 10. Text file “Supplementary Materials text file.pdf” contains minor calculations mentioned in Section 2 of the paper. <br>
DOI: 10.4121/22148099.v1
title: Data underlying the publication: Influence of Charge Regulation on the Performance of Shock Electrodialysis

description: The goal of the research was to determine the effect of charge regulation on a shock electrodialysis process by performing numerical Comsol simulations. All the data in this dataset was obtained by calculating theoretical models either in Matlab or Comsol. The Excel files summarize the quantitative data obtained from the attached Comsol simulations. The Matlab file "Shock ED plotting" is used for plotting the graphs from the Excel sheet data. The Matlab file "charge regulation model" is used to calculate the charge (of silica) for different salt concentrations and temperatures. All the relevant Comsol model files (version 6.0) used to obtain the results are included in the dataset. <br> <br>