cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3r651/9
title: CoNe_Mig500_OutputFiles

description: CoNe Ne estimation output files for Migration scenarios with true Ne = 500. See the same readme for other input/output files for naming conventions.
DOI: 10.5061/dryad.51cj4/1
title: Tschumi_et_al_Data

description: Cereal leaf beetle-, plant damage-, natural enemy-, landscape-, and field data used for evaluations
DOI: 10.5061/dryad.73r6j/2
title: Boreal and arctic food webs of the Barents Sea

description: The excel file contains the boreal and the arctic food web of the Barents Sea. Sheet 1: boreal food web. Sheet 2: arctic food web.The food web networks are represented by binary adjacency food web matrices. Each element is equal to 1 if the trophospecies in the column (predator) eats the trophospecies in the row (prey), and is equal to 0 if no trophic interaction takes place.
DOI: 10.5061/dryad.7bp03/1
title: Supplementary table

description: Protein expression ratios after log2-transformation, impute of missing values by normal distribution and loess normalisation. Results of the differential gene expression analyses.
DOI: 10.5061/dryad.bg43c/1
title: community growth and diversity during evolution experiment

description: Microbial community growth rates (total change in OD600 over 24 to 96 hours) measured in triplicate at two assay temperatures every 9 days for 81 days. Shannon diversity and community evenness are both calculated for experimental blocks 1, 3 and 5 from samples taken on days 27, 54 and 81. Time is reported in hours. Temperature reported in degrees Celsius.
DOI: 10.5061/dryad.bg43c/2
title: biolog metabolism data during evolution experiment

description: Community carbohydrate use during experimental evolution. Carbohydrate use (with threshold of OD600 &gt; 0.2) for starting community and across sampling days 27, 54 and 81 and change in carbohydrate use. Column, biologcarb, refers to the carbohydrate at that well position on biolog GN2 microplate.
DOI: 10.5061/dryad.bg43c/3
title: Isolate and community local adaptation

description: Isolate and community local adaptation at day 81 of experimental evolution.
DOI: 10.5061/dryad.c8fb1/7
title: Single visitation: pollen deposition

description: Pollen deposition data for single visitations used to test whether local adaptation is a consequence of the mechanical fit between flower and visitor morphology.
DOI: 10.5061/dryad.c8fb1/8
title: Single visitation: seedset

description: Seedset data from single visitations used to test whether local adaptation is a consequence of the mechanical fit between flower and visitor morphology.
DOI: 10.5061/dryad.c8fb1/9
title: Supplementary material (controls)

description: Data used in controls (Supplementary material)
DOI: 10.5061/dryad.cc2kq/1
title: Australian right whale microsatellite and stable isotope data

description: This file contains the sampling location and state, mtDNA haplotype, sex, stable isotope and multi-locus microsatellite genotype data for Australian southern right whale samples used in the study.
DOI: 10.5061/dryad.cc2kq/2
title: Comparing_stable_isotope&genetic_similarity_files

description: Dryad Archive for SREP16182: SI_SRW_data.zip. This zip file contains: 1 - Files of estimates of pairwise relatedness generated from microsatellite loci in SREP16182_SRWdata_Archive in the program COANCESTRY, using the kinship estimators of Lynch & Ritland 1999 (Lynch&Ritland_relatedness.txt) and Ritland 1996 (Ritland_relatedness.txt). 2 – Files of sample stable isotope values for both d13C (Sample_dC.txt) and d15N (Sample_dN.txt), as well as pairwise similarities of d13C calculated using Euclidean distance in program GENODIVE (dC_euclidean_correct_names.gdv). 3 – A file that includes d13C, d15N, mtDNA, sampling location and sex ID data for the samples used in the GLM work (SI_data_Aus_SRWtxt.txt) 4 – R code for (1) running the comparison of similarities between d13C and microsatellite-based kinship estimators and (2) running GLMs on d13C data, with mtDNA, sex and sampling state as potential explanatory factors. R code is annotated so it can be easily run if the files are placed in the appropriate files and required packages are downloaded.
DOI: 10.5061/dryad.dm94c/1
title: InvAllometric FraineretalOikos2015

description: Data on invertebrate length and dry mass used for calculating allometric relationships.
DOI: 10.5061/dryad.dm94c/2
title: InvertebrateFinalLength FraineretalOikos2015

description: Data on invertebrate length measured at the end of the experiment, using high-quality digital photographs and software analyzer ImageJ.
DOI: 10.5061/dryad.dm94c/3
title: LitterFinalNP FraineretalOikos2015

description: Nitrogen and phosphorus concentration in the leaf litter at the end of the experiment.
DOI: 10.5061/dryad.dm94c/4
title: LitterMassLoss FraineretalOikos2015

description: Initial and final dry mass of the leaf litter.
DOI: 10.5061/dryad.h174j.2
title: Data from: Species interactions mediate phylogenetic community structure in a hyper-diverse lizard assemblage from arid Australia
DOI: 10.5061/dryad.h174j.2/1.2
title: AN52871_data
DOI: 10.5061/dryad.h174j.2/2.2
title: LG_phylogenies
DOI: 10.5061/dryad.h75fp2q8.1
title: Data from: Parallel allochronic divergence in a winter moth due to disruption of reproductive period by winter harshness
DOI: 10.5061/dryad.hb4ht.1
title: Data from: Life-history trait database of European reptile species
DOI: 10.5061/dryad.hb4ht.2/1.2
title: Life-history trait database of European reptile species

description: Our database comprises two sections: basic information and actual trait data. In the basic section, general information about taxonomy, references, and countries is stored. The trait data section is divided into the following: Activity / Energy / Habitat; Phenology; Sexual Maturity; Movement; and Morphometry. Object name: Trait database of reptile life historiesCharacter encoding: UTF-16Format name: Microsoft Access DatabaseFormat version: Microsoft® Access® 2010 (14.0.7104.5000) SP2 MSO (14.0.7116.5000) as part of Microsoft Office Professional Plus 2010Language: EnglishLicenses of use: Data have been made available under the Creative Commons CC-Zero Waiver: http://creativecommons.org/publicdomain/zero/1.0/.  Thus, the data can be freely used for non-commercial purposes provided the source is acknowledged. See Creative Commons for more details of the conditions of usage.
DOI: 10.5061/dryad.k1m1g.1
title: Data from: Population genetic structure and approximate Bayesian computation analyses reveal the southern origin and northward dispersal of the oriental fruit moth Grapholita molesta (Lepidoptera: Tortricidae) in its native range
DOI: 10.5061/dryad.k1m1g.2/19.2
title: Haplotype sequences of the mitochondrial genes from the Grapholita molesta

description: Haplotype sequences of the mitochondrial genes cox1, cox2, atp8, atp6, nad5, nad1, and lrna and the combination of the seven genes from the Grapholita molesta.
DOI: 10.5061/dryad.k1m1g.2/20.2
title: Eight microsatellite loci from 14 populations of the Grapholita molesta

description: Genotypes of eight microsatellite loci from 14 populations of the Grapholita molesta
DOI: 10.5061/dryad.k1m1g.2/21.2
title: Input files of BAPS, BEAST, BSP, DIYABC, GENELAND and Mantel test analyses

description: Input files of BAPS, BEAST, BSP, DIYABC, GENELAND and Mantel test analyses
DOI: 10.5061/dryad.k3836/1
title: Jiang_Data.csv

description: Metadata for Jiang et al 2015 Evolution. The file Jiang_Data.csv contains all data required to recreate analyses for Jiang, Torrance, Peichel, and Bolnick 2015, Differences in Rheotactic Responses Contribute to Divergent Habitat Use Between Parapatric Lake and Stream Threespine Stickleback. Evolution. The data columns are as follows: Group: source population, Fish_ID: a unique identifier, Flow_Direction: The direction that the water pump power heads pointed to generate flow, whether or not flow was actually initiated by plugging in the power heads. That is, we assign a flow direction randomly whether or not we turned on the pumps to actually generate flow. First_trial: whether a given fish (see Fish_ID) was tested first in still or flowing water. Randomly assigned. Current: Flow presence/absence (Flow/still) for the particular trial in the data row. Group: Whether the fish was wild-caught (Field), or Lab-raised. Subgroup: Whether the fish came from near or in the inlet stream, or outlet stream. Origin: Whether the fish came from the lake or stream. Location: A categorical summary of where the fish spent most of its time in the flow tank. Distance.total:  Net upstream movement. Distance.up.total: Cumulative upstream movement. Per.upstream: Percentage of time spent facing upstream. Location: Score representing the relative use of inner,middle, and outer concentric areas of the flow tank. The numbers presented here are obtained by digitizing videos of each fish (2 videos per fish, flow and still water), and converting the videos into data tables (one per fish) representing the fish’s location and orientation in ~1 second time intervals. These very large tables are available from the authors upon request: email danbolnick@austin.utexas.edu.
DOI: 10.5061/dryad.p1k27/1
title: Overwinter transmission data for gypsy moth baculovirus

description: A csv file with individual fates (virus killed, survived, or other early death) for neonatal gypsy moth (Lymantria dispar) larvae infected in a field experiment that replicated the overwinter transmission process.  Data also include the location of oviposition and the size of the virus-killed larval cadaver, estimated by image analysis.  The field experiment was conducted in southwest Michigan, U.S., using 16 baculovirus isolates previously collected from virus-killed larvae in the U.S. Midwest.
DOI: 10.5061/dryad.q2kg1/2
title: Suppl Material 2 Azer: Assessment of the corresponding cardiovascular topics in Harrison’s Principles of Internal Medicine, 18th Edition

description: Assessment of the corresponding cardiovascular topics in the Harrison’s Principles of Internal Medicine, 18th Edition in regard to number of images, illustrations, graphs, tables, references (as per the textbook and the CD provided with the book, Access Medicine) and readability scores of each topic.
DOI: 10.5061/dryad.v1v13/10
title: Genetic and geographic distance matrix for ddRAD-seq among hibernacula

description: Pairwise PhiST of ddRAD-seq (above diagonal) and geographic distance (km; below diagonal) between hibernating colonies of Myotis lucifugus used in risk models of disease spread. Column 1 gives sample size (N) and column 2 gives sampling locality (Site).
DOI: 10.5061/dryad.v1v13/2
title: Key to cytb haplotypes

description: Sample ID and/or GenBank Accession number of sequences used to generate the cytb parsimony tree. The corresponding haplotype ID used in the tree file, and number of identical sequences belonging to the haplotype are provided.
DOI: 10.5061/dryad.v1v13/3
title: Myotis cytb haplotype sequences

description: Cytb haplotype sequences (fasta format) used to create haplotype network. See Key to cytb haplotypes for samples and GenBank accession numbers belonging to each haplotype.
DOI: 10.5061/dryad.v1v13/4
title: SNPs from range-wide Myotis lucifugus ddRAD-seq

description: SNPs (STRUCTURE format) from ddRAD-seq data used in principal component analysis of range-wide samples. The first two columns give the sample name (with allele number) and the sampling locality. Headers for the remaining columns indicate the RAD locus and SNP number. -9 indicates missing data; 0 and 1 indicate indels; 2,3,4,5 indicate A,C,G,T, respectively
DOI: 10.5061/dryad.v1v13/5
title: ddRAD-seq from hibernating Myotis lucifugus colonies

description: ddRAD-seq data (nexus format) used to estimate PhiST among hibernating colonies of Myotis lucifugus for risk models of disease spread. Sequences represent unphased, concatenated RAD sequences. Headers indicate the sample name and locality. Only loci with genotype calls for all samples were included.
DOI: 10.5061/dryad.v1v13/6
title: ddRAD-seq from range-wide Myotis lucifugus

description: ddRAD-seq data (fasta format) from Myotis lucifugus sampled across their range. Unphased sequences were concatenated for each individual and used to estimate PhiST across sampling localities. Headers indicate sample ID (with allele number) and sampling locality. Only loci with genotype calls for all samples were included.
DOI: 10.5061/dryad.v1v13/7
title: Cytb sequences from hibernating Myotis lucifugus colonies

description: Cytb sequences (fasta format) from hibernating colonies of Myotis lucifugus used to estimate PhiST for risk models of disease spread. Header indicates sample ID and sampling locality.
DOI: 10.5061/dryad.v1v47/1
title: Razgour_etal15_M_escalerai_locations_Maxent

description: Myotis escalerai location records used in the species distribution modelling.
DOI: 10.5061/dryad.v1v47/2
title: Razgour_etal15_M_escalerai_sequences

description: Aligned mtDNA cytochrome b sequences for all Myotis escalerai individuals.
DOI: 10.5061/dryad.09743/1
title: microsatellite data Feldmochinger Lake

description: genepop file of the microsatellite raw data of the Feldmochinger Lake from 2008 till 2013
DOI: 10.5061/dryad.09743/2
title: microsatellite data competition experiment

description: genepop file of the microsatellite data of the competition experiments including the reference MLGs from the experimental clones
DOI: 10.5061/dryad.10nh8/1
title: Codon Alignments

description: Codon alignments used in study.
DOI: 10.5061/dryad.10nh8/2
title: matK alignment

description: The matK alignment was used for obtaining ultrametric branch lengths on the species tree.
DOI: 10.5061/dryad.10nh8/3
title: Species tree

description: This is the species tree used for all comparative analyses.
DOI: 10.5061/dryad.18796/3
title: Field collected trait data

description: This MS Excel file contains floral trait data collected from 8 natural populations (2 yellow ecotype populations: LO and POTR, 2 red ecotype populations: MT and UCSD, and 4 hybrid populations: WM, MW, OAK and LKW). All measurement are in mm except for anthocyanin absorbance which was measured at 520 nm.
DOI: 10.5061/dryad.1dp6s/1
title: Contigs obtained with Newbler and CLC Genomic Workbench de novo assemblers
DOI: 10.5061/dryad.1dp6s/2
title: Alignment of the RpRd domain
DOI: 10.5061/dryad.1dp6s/3
title: Phylogenetic tree based on RpRd domain alignment
DOI: 10.5061/dryad.1dp6s/4
title: Validated SNVs

description: Validated SNVs (CLC Genomic Workbench approach) for all APLV-quasispecies
DOI: 10.5061/dryad.1dp6s/5
title: PCA input for dinucleotide bias analysis
DOI: 10.5061/dryad.2dq44/1
title: 1_Bonanomi_et_al_Funct_Ecol_2015_db_dryad

description: Data of plant cover, species richness, soil quality and microclimate (temperature and soil moisture) inside and outside Silene acaulis plant.
DOI: 10.5061/dryad.3640g/1
title: Gilman and Kozak codes

description: Codes used to generate simulated data.
DOI: 10.5061/dryad.3hc5t/1
title: marburg.full.nucleotide

description: Full genome nucleotide sequences of Marburg viruses taken from NCBI GenBank and used for codon usage analysis.
DOI: 10.5061/dryad.3hc5t/2
title: Marburg.codon.analysis.output

description: RAW output of codon analysis steps for Marburg virus genomes.
DOI: 10.5061/dryad.3r651/12
title: ParamFiles_ConversionAndAnalysisScripts

description: See the Readme files contained within each subfolder. These are the input files used for nemo simulations (Migration and IBD raw simulation files were &gt;80GB in size when compressed, and may be requested from KJ Gilbert). Otherwise, these input files contain the parameters used in Nemo v2.2.0 to create the raw population files from which individuals were sampled. R scripts for file conversion to the various program inputs as well as for analyzing the various outputs are also included, but are also made public on GitHub at: https://github.com/kjgilbert/NeEstimation_Param-Conversion-Analysis_Files
DOI: 10.5061/dryad.3r651/8
title: CoNe_Mig50_OutputFiles

description: CoNe Ne estimation output files for Migration scenarios with true Ne = 50. See the same readme for other input/output files for naming conventions.
DOI: 10.5061/dryad.6361n/1
title: BAYESCAN.FILES

description: Input structure-like and BayeScan files for analyzing 3,523 autosomal and 172 Z-linked markers between Mexican ducks and mallards, as well as within Mexican ducks.
DOI: 10.5061/dryad.6361n/2
title: FASTA & NEXUS.FILES

description: Final genotypes for 17 mallards and 105 Mexican ducks in fasta format. For fasta files, we provide individual files per locus across 3,523 autosomal and 172 Z-linked markers, as well as, concatenated files across all markers, autosomal-only, and Z-linked only. Additionally, concatenated files for autosomal and Z-linked are provided in nexus format
DOI: 10.5061/dryad.6361n/4
title: MALLvMEDU.IM

description: Run-ready IM input file with 1 mitochondrial and 17 nuclear introns (geometric mean of locus length = 215.8 bp) sequenced across 25 mallards and 25 Mexican ducks (attained from Lavretsky et al. 2014, The Auk. 131:524–538).
DOI: 10.5061/dryad.6361n/5
title: PCA.ADMIXTURE.INPUT.FILES

description: Run-ready files for PCA and ADMIXTURE (includes *.ped and *.map) analyses are provided for 3,523 autosomal and 172 Z-linked markers.
DOI: 10.5061/dryad.6mt70/1
title: Phylogenetic tree

description: Phylogenetic tree analysis of HCV core protein gene sequences (n = 175). Shown are HCV mono-infected (blue circles) and HCV/HIV co-infected samples (red triangles)
DOI: 10.5061/dryad.7gt4m/1
title: Amphibian monitoring canton Aargau, Switzerland
DOI: 10.5061/dryad.92n53/1
title: data
DOI: 10.5061/dryad.b73f3/1
title: Dispersal and inbreeding in Formica exsecta

description: Data on natal dispersal and queen and colony level inbreeding of ant queens caught after mating flight and of established colonies of ant Formica exsecta. Please refer to the excel file for description of the variables in the data file.
DOI: 10.5061/dryad.d5h1n.1
title: Data from: Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (Poaceae)
DOI: 10.5061/dryad.d5h1n.2
title: Data from: Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (Poaceae)
DOI: 10.5061/dryad.d5h1n.2/3.2
title: This file contains 8 supplemental tables and 14 supplemental figures.
DOI: 10.5061/dryad.d5h1n.2/4.2
title: Sequence Alignment

description: This file contains 3 alignments of chloroplast genome sequences assembled in the study. These alignments are in the FASTA format.
DOI: 10.5061/dryad.d5h1n.2/5.2
title: Data matrices

description: This file contains 8 data matrices used in the study for phylogenetic analyses. The names of the data sets correspond to those in the main text.
DOI: 10.5061/dryad.f01t1/1
title: ORD_TJ-JEB-2015-00382R1_agamid_data
DOI: 10.5061/dryad.f01t1/2
title: ORD_TJ-JEB-2015-00382R1_hyoid_data
DOI: 10.5061/dryad.h174j.1
title: Data from: Species interactions mediate phylogenetic community structure in a hyper-diverse lizard assemblage from arid Australia
DOI: 10.5061/dryad.k8073.2
title: Data from: Rapid light-induced shifts in opsin expression: finding new opsins, discerning mechanisms of change, and implications for visual sensitivity
DOI: 10.5061/dryad.r503m/1
title: Data_J_R_Soc_Interface_rsfi20150479

description: This zip file contains the raw data that have been used in Van Leeuwen JL, Voesenek CJ, Muller UK, J. R. Soc. Interface 12: 20150479 (http://dx.doi.org/10.1098/fsif.2015.0479). Three text files are provided on the data formatting (data_formats.txt), an overview of the swimming sequences (overview.txt), and the measured tail beat amplitudes for the swimming sequences (tail_amplitudes.txt). Raw video data (directory: Video), digitised longitudinal axis data (directory: Axes), and three-dimensional body models (directory: Body models) are arranged in three main directories.
DOI: 10.5061/dryad.rk4jp/1
title: Alien mammals

description: The data file contains data on the status of alien (non-native) mammalian species at the global scale from introduction to spread, number of unique introduction locations for all introduced species, and mean life history traits for all species. The README file provides the basic details on the variables in the datafile. Full details on the protocol for the extraction of the data from the literature, classification of the species, and references underling the data can be found in the Supplementary Information file of the Ecology Letters paper (for details on the data collection: SI, Section 1.1; for additional data references: SI, 4.2).
DOI: 10.5061/dryad.s6k26/1
title: Datasets for Host and Parasitoid density, host plant size, and Parasitoid-host ratio

description: This is the original dataset on the determination of effects of Host and Parasitoid density,, host plant size, and Parasitoid-host ratio on the competetion between two species of parasitoid Tetrastichus planipennisi and Spathius galinae.
DOI: 10.5061/dryad.t215b.1
title: Data from: Persistence in peripheral refugia promotes phenotypic divergence and speciation in a rainforest frog
DOI: 10.5061/dryad.t215b.2
title: Data from: Persistence in peripheral refugia promotes phenotypic divergence and speciation in a rainforest frog
DOI: 10.5061/dryad.t215b.2/1.2
title: Hoskin et al - Am Nat - Morphology

description: Morphology data, collected in the field.Column headings, abbreviations, units -Species;Sex: M=male;SVL: Snout-to-vent length, in mm;TL: Tarsus length, in mm;HW: Head width, in mm;DISC: Third finger-disc width, in mm;WT: Weight, in grams; Major Lineage: Major genetic lineages. H=Hinchinbrook Is., N=northern, C=central;Site/Location;Altitude: elevation above sea level, in metres.
DOI: 10.5061/dryad.t215b.2/2.2
title: Hoskin et al - Am Nat - Call

description: Call data - collected in the fieldColumn headings, abbreviations, units -Species;Sex: M=male;Major Lineage: Major genetic lineages. H=Hinchinbrook Is., N=northern, C=central;DUR: Call duration, in milliseconds;DF: Call dominant frequency, in kHz;PULSE: Call pulse rate, in pulses/second;Temperature: Air temperature in degrees Celsius;Site/Location;Altitude: elevation above sea level, in metres.
DOI: 10.5061/dryad.t215b.2/3.2
title: Hoskin et al - Am Nat - Distribution points
DOI: 10.5061/dryad.t215b.2/4.2
title: Hoskin et al - Am Nat - Sequence data (Corn16)
DOI: 10.5061/dryad.t215b.2/5.2
title: Hoskin et al - Am Nat - Sequence data (Corn53)
DOI: 10.5061/dryad.t68v8/1
title: Point count data
DOI: 10.5061/dryad.tf6r4/1
title: Norway Chironomidae Pupal Exuviae Specimen Data

description: Specimen data for Chironomidae pupal exuviae voucher specimens submitted to the NTNU University Museum.
DOI: 10.5061/dryad.tf6r4/2
title: DNA quantity data

description: DNA quantity data organized by DNA extraction method associated with individual chironomid pupal exuviae DNA extract samples.
DOI: 10.5061/dryad.tf6r4/3
title: Handling time, PCR success, Sequence success, and Target sequence success data

description: Handling time, PCR success, sequence success, and target sequence success for chironomid pupal exuviae samples.
DOI: 10.5061/dryad.tf6r4/4
title: R code associated with Table 4

description: R code associated with Table 4
DOI: 10.5061/dryad.tv380/1
title: activity during transect counts

description: Collected in the fiedl by Julie Lebeau.
DOI: 10.5061/dryad.tv380/2
title: time allocated to feed during butterfly trackings

description: Proportion of time allocated to feed during butterfly tracks.Collected in the field by Julie Lebeau.
DOI: 10.5061/dryad.tv380/3
title: Proportion of the feeding time that targeted Cj during butterfly trackings

description: Collected in the field by Julie Lebeau
DOI: 10.5061/dryad.tv380/4
title: Flight path observed during butterfly trackings

description: Collected by Julie Lebeau