cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25656513
title: Supplementary Material for: Transcriptomic Profiling of Lactotroph Pituitary Neuroendocrine Tumors via RNA Sequencing and Ingenuity Pathway Analysis

description: Introduction: Lactotroph pituitary neuroendocrine tumors (PitNETs) are common pituitary tumors, but their underlying molecular mechanisms remain unclear. This study aimed to investigate the transcriptomic landscape of lactotroph PitNETs and identify potential molecular mechanisms and therapeutic targets through RNA sequencing and ingenuity pathway analysis (IPA).
Methods: Lactotroph PitNET tissues from five surgical cases without dopamine agonist treatment underwent RNA sequencing. Normal pituitary tissues from three patients served as controls. Differentially expressed genes (DEGs) were identified, and the functional pathways and gene networks were explored by IPA.
Results: Transcriptome analysis revealed that lactotroph PitNETs had gene expression patterns that were distinct from normal pituitary tissues. We identified 1,172 upregulated DEGs, including nine long intergenic noncoding RNAs (lincRNAs) belonging to the top 30 DEGs. IPA of the upregulated DEGs showed that the estrogen receptor signaling, oxidative phosphorylation signaling, and EIF signaling were activated. In gene network analysis, key upstream regulators, such as EGR1, PRKACA, PITX2, CREB1, and JUND, may play critical roles in lactotroph PitNETs.
Conclusion: This study provides a comprehensive transcriptomic profile of lactotroph PitNETs and highlights the potential involvement of lincRNAs and specific signaling pathways in tumor pathogenesis. The identified upstream regulators may be potential therapeutic targets for future investigations.
DOI: 10.6084/m9.figshare.26097226
title: Data_Sheet_Multifractal Analysis of Neuronal Morphology in the Human Dorsal Striatum.xlsx

description: This study investigates the multifractal properties of two-dimensional neuron projections from the human dorsal striatum, focusing on potential morphological changes related to ageing and differences based on spatial origin within the nucleus. Using multifractal spectra, we analyzed various parameters, including generalized dimensions and Hölder exponents, to characterize the neurons' morphology.
DOI: 10.6084/m9.figshare.26097226.v2
title: Data_Sheet_Multifractal Analysis of Neuronal Morphology in the Human Dorsal Striatum.xlsx

description: This study investigates the multifractal properties of two-dimensional neuron projections from the human dorsal striatum, focusing on potential morphological changes related to ageing and differences based on spatial origin within the nucleus. Using multifractal spectra, we analyzed various parameters, including generalized dimensions and Hölder exponents, to characterize the neurons' morphology.
DOI: 10.6084/m9.figshare.845654
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.1594/pangaea.921688
title: List of seamounts in the world oceans - An update

description: An updated prediction seamounts in all oceans. This uses the same methodology as Yesson et al. (2011) (https://doi.pangaea.de/10.1594/PANGAEA.757564), which infers seamount presence by using a series of algorithms to look for conical features on the seabed. It is based on the global bathymetry SRTM v.11.
DOI: 10.3886/e189901v2
title: Public Comment Data for the 2023 Case for the Middle Eastern and North African Checkbox in the United States

description: A public comment period outlining changes to the collection of race and ethnicity data on the US Census and other federal forms opened in January 2023. The purpose of this project is to collect and manage public comments in relation to the Office of Management and Budget (OMB) Statistical Policy Directive 15 proposals regarding the addition of a separate Middle Eastern and North African (MENA) checkbox on the US Census and other required federal forms. Public comments posted in February and March 2023 were reviewed to determine whether MENA was mentioned, whether comments supported a MENA checkbox, and whether comments mentioned support for health-related reasons. <br><br>During the first review of comments, there were 3,062 comments reviewed. Most (71.49%) mentioned adding a MENA checkbox. Of those, 98.86% supported adding a MENA checkbox. Among those, 31.98% mentioned adding a MENA checkbox for health-related reasons. These results have been submitted for publication and are currently under peer review (see citation for pre-print below).<br><br>Data collection and review of comments is ongoing. As of April 25, 2023, there were 3,355 comments reviewed posted from February 1 though March 6, 2023. Of those, 72.10% mention the addition of the MENA checkbox. Of those, 98.97% supported adding a MENA checkbox. Among those, 31.38% mentioned adding a MENA checkbox for health-related reasons. For this analysis, we also looked at mentions of adding the MENA checkbox for language or linguistic services. Of the comments that supported adding the checkbox, 55.25% of the comments mentioned the need for a MENA checkbox for services to be provided for language and linguistic services.<br><br>The data provided is a STATA (.dta) file.
DOI: 10.5067/epic/dscovr/l1b.001
title: DSCOVR EPIC Level 1B Version 1
DOI: 10.5255/ukda-sn-6727-11
title: Quarterly Labour Force Survey, 1992-2017: Secure Access
DOI: 10.5257/wb/ids/2019
title: International Debt Statistics (IDS) (2019 Edition)

description: International Debt Statistics focuses on financial flows, trends in external debt, and other major financial indicators for low- and middle-income countries. Includes time-series indicators from 1970, for most reporting countries, and pipeline data for scheduled debt service payments on existing commitments.
DOI: 10.5281/zenodo.10161743
title: Products and Models for "A benchmark JWST near-infrared spectrum for the exoplanet WASP-39 b"

description: Publication Here: https://www.nature.com/articles/s41550-024-02292-xObserving exoplanets through transmission spectroscopy supplies detailed information on their atmospheric composition, physics, and chemistry. Prior to JWST, these observations were limited to a narrow wavelength range across the near-ultraviolet to near-infrared, alongside broadband photometry at longer wavelengths. To understand more complex properties of exoplanet atmospheres, improved wavelength coverage and resolution are necessary to robustly quantify the influence of a broader range of absorbing molecular species. Here we show a combined analysis of JWST transmission spectroscopy across four different instrumental modes spanning 0.5–5.2 micron using Early Release Science observations of the Saturn-mass exoplanet WASP-39b. Our uniform analysis constrains the orbital and stellar parameters within sub-percent precision, including matching the precision obtained by the most precise asteroseismology measurements of stellar density to-date. Leveraging the advantages of a uniform light curve analysis, we improve the agreement between the transmission spectra of all modes, except for the NIRSpec PRISM, which is affected by partial saturation of the detector.  Together, these collected data constitute the most comprehensive transmission spectrum of an exoplanet to date, providing unparalleled access to atmospheric absorbers including Na, K, H2O, CO, CO2, and SO2.
DOI: 10.5281/zenodo.10407741
title: Potential near-term wetting of the Southwestern United States if the Eastern Pacific cooling trend reverses

description: Data for the manuscript "Potential near-term wetting of the Southwestern United States if the Eastern Pacific cooling trend reverses."
DOI: 10.5281/zenodo.10575861
title: Theory data for: Attosecond Core-Level Absorption Spectroscopy Reveals the Electronic and Nuclear Dynamics of Molecular Ring-Opening

description: Raw theory data and analysis scripts for the theoretical part of the publication: 

"Attosecond Core-Level Absorption Spectroscopy Reveals the Electronic and Nuclear Dynamics of Molecular Ring-Opening"

https://www.researchsquare.com/article/rs-3429001/v1

https://arxiv.org/abs/2209.04330

 

See also: https://github.com/ziechys/SharcAnalysis
DOI: 10.5281/zenodo.10622332
title: Package for the paper Unveiling Assumptions: Exploring the Decisions of AI Chatbots and Human Testers

description: This package includes the data for the study reported in the paper "Unveiling Assumptions: Exploring the Decisions of AI Chatbots and Human Testers".

The data includes (i) answers from 127 human testers on a simple test prioritisation problem, (ii) answers from four chatbots prompted with the same problem (ChatGPT 4 and 3.5, Bard and Copilot), and (iii) scripts to create plots and tables used in the paper.

Intructions about using the paper are in the README.md file.
DOI: 10.5281/zenodo.10837640
title: Deep Learning-Based Prediction of Global Ionospheric TEC during Storm Periods: Mixed CNN-BiLSTM Method
DOI: 10.5281/zenodo.11107185
title: Cladonema radiatum Alr and IgSF genes assembly and domain predictions

description: This dataset is related to the submitted paper " A single gene determines allorecognition in hydrozoan jellyfish Cladonema radiatum inbred lines ".

Abstract:

 

Allorecognition—the ability of an organism to discriminate between self and non-self—is crucial to colonial marine animals to avoid invasion by other individuals in the same habitat. The cnidarian hydroid Hydractinia has long been a major research model in studying invertebrate allorecognition, establishing a rich knowledge foundation. In this study, we introduce a new cnidarian model Cladonema radiatum (C. radiatum). C. radiatum is a hydroid jellyfish which also forms polyp colonies interconnected with stolons. Allorecognition responses, fusion or regression of stolons, are observed when stolons encounter each other. By transmission electron microscopy, we observe rapid tissue remodelling contributing to gastrovascular system connection in fusion. Rejection responses are regulated by reconstruction of the chitinous exoskeleton perisarc, and induction of necrotic and autophagic cellular responses at cells in contact with the opponent. Genetic analysis identifies allorecognition genes: six Alr genes located on the putative Allorecognition Complex (ARC) and four immunoglobulin superfamily genes on a separate genome region. C. radiatum allorecognition genes show notable conservation with the Hydractinia Alr family. Remarkedly, stolon encounter assays of inbred lines reveal that genotypes of Alr1 solely determine allorecognition outcomes in C. radiatum.
DOI: 10.5281/zenodo.12159313
title: Supplementary Material from: Meridional shifts of the Southern Hemisphere westerlies during the early Cenozoic

description: Dataset of median grain size, siliciclastic mass accumulation rate (MARsiliciclastic), clay minerals, and major and trace elements of siliciclastic fractions at International Ocean Discovery Program (IODP) Site U1514 generated from the study: Meridional shifts of the Southern Hemisphere westerlies during the early Cenozoic.
DOI: 10.5281/zenodo.2556355
title: Myotonic dystrophy research: imaging result files ( DTI, VBM) from a 5-year longitudinal follow-up study

description: This ZIP-file contains supplementary data belonging to the manuscript <strong>"Tracking the brain in myotonic dystrophy: a 5-year longitudinal follow-up study", published in PLOS ONE.</strong> In this manuscript we aimed to examine the natural history of brain involvement in adult-onset myotonic dystrophies type 1 and 2 (DM1, DM2). We conducted a longitudinal observational study to examine functional and structural cerebral changes in myotonic dystrophies. We enrolled 16 adult-onset DM1 patients, 16 DM2 patients, and 17 controls. At baseline (T1) and at follow-up (T2) participants underwent neurological, neuropsychological, and 3T-brain MRI examinations using identical study protocols that included voxel-based morphometry and diffusion tensor imaging. The ZIP-file contains imaging result files from the different statistical analyses.
DOI: 10.5281/zenodo.4629402
title: Revenue and expenses Civil Service Vol. To 2019

description: <pre>Revenue and expenses Civil Service Vol. To 2019</pre>
DOI: 10.5281/zenodo.8300684
title: Dataset of monthly mean and annual carbon budget at Takayama in a cool-temperate deciduous forest in central Japan from 1994 to 2021

description: This dataset contains monthly mean and annual net ecosystem production (NEP), gross primary production (GPP) and ecosystem respiration (Rec) estimated from the carbon dioxide (CO<sub>2</sub>) flux measurement at Takayama (36°09’N, 137°25’E, 1420 m a.s.l.) in a cool-temperate deciduous forest in central Japan from 1994 to 2021. The CO<sub>2</sub> flux measurements were initially obtained by aerodynamic method beginning in September 1993, replaced by eddy covariance method in July 1998. This dataset was used in the manuscript “Interannual variation and trend of carbon budget observed over a 28-year period at Takayama in a cool-temperate deciduous forest in central Japan”, to be submitted to a scientific journal for publication.
DOI: 10.5281/zenodo.8385954
title: Resolving the Interpretation of Magnetic Coercivity Components from Backfield Isothermal Remanence Curves Using Unmixing of Non-linear Preisach Maps: Application to Loess-Paleosol Sequences

description: The data set includes:


1. Non-linear Preisach measurements for Lunca and Costinești loess-paleosol sections


2. IRM coercivity distributions from Lunca and Costinesti interpolated on a common sequence of fields


3. Lunca granulometry data


4. Median Grain size for Costineși section.


5. Magnetic susceptibility data measured at Lunca section (Constantin et al., 2015)


6. IRM acquisition curves derived from backfield IRM data through rescaling for Costinesti section


7. Costinesti rock magnetic data (Necula et al., 2015)
DOI: 10.5683/sp/8rodev
title: Behavioral and Pathophysiological Outcomes Associated with Caffeine Consumption and Repetitive Mild Traumatic Brain Injury (RmTBI) in Adolescent Rats

description: Raw data for the analysis of our experiment
DOI: 10.6073/pasta/d5665c3ca8d5b1ea85495addb865a2fc
title: Long-term measurements of microbial biomass and activity at the Hubbard Brook Experimental Forest, 1994 - present
DOI: 10.6084/m9.figshare.22344664.v1
title: Data file 1. Search Strategy.docx

description: Search Strategy
DOI: 10.6084/m9.figshare.22344667.v1
title: Data file 4. Description of outcome measures results of intervention effectiveness.docx

description: Results of included studies.
DOI: 10.6084/m9.figshare.22344670.v1
title: Data file 3. Intervention details using TIDieR checklist.docx

description: TIDIER checklist
DOI: 10.6084/m9.figshare.22344724.v1
title: Data file 2. PRISMA 2020 checklist

description: PRISMA
DOI: 10.6084/m9.figshare.23684778.v5
title: Data Excel sheet for <b>Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India. </b>

description: This is the data collection sheet for the study <b>Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India</b>
DOI: 10.6084/m9.figshare.23684859.v5
title: Statistical analysis for Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India

description: Statistical analysis of Deciphering the significance of neutrophil to lymphocyte and monocyte to lymphocyte ratios in tuberculosis: A case-control study from southern India
DOI: 10.6084/m9.figshare.25656297
title: Supplementary Material for: Collagen XIII is the Key Molecule of Neurovascular Junctions in the Neuroendocrine System

description: Introduction: Axons of magnocellular neurosecretory cells project from the hypothalamus to the posterior lobe (PL) of pituitary. In the PL, a wide perivascular space exists between the outer basement membrane (BM), where nerve axons terminate, and the inner BM lining the fenestrated capillaries. Hypothalamic axon terminals and outer BMs in the PL form neurovascular junctions. We previously had found that collagen XIII is strongly localized in the outer BMs. In this study, we investigated the role of collagen XIII in the PL of rat pituitaries. Methods: We first studied the expression of Col13a1, the gene encoding the α1 chains of collagen XIII, in rat pituitaries via qPCR and in situ hybridization. We observed the distribution of COL13A1 in rat pituitary using immunohistochemistry and immunoelectron microscopy. We examined the expression of Col13a1 and the distribution of COL13A1 during the development of pituitary. In addition, we examined the effects of water deprivation and arginine vasopressin (AVP) signaling on the expression of Col13a1 in the PL. Results: Col13a1 was expressed in NG2-positive pericytes, and COL13A1 signals were localized in the outer BM of the PL. The expression of Col13a1 was increased by water deprivation and was regulated via the AVP/AVPR1A/Gαq/11 cascade in pericytes of the PL. Conclusion: These results suggest that pericytes surrounding fenestrated capillaries in the PL secrete COL13A1 and are involved in the construction of neurovascular junctions. COL13A1 is localized in the outer BM surrounding capillaries in the PL and may be involved in the connection between capillaries and axon terminals.
DOI: 10.6084/m9.figshare.25714959.v1
title: Data: Unravelling spatial heterogeneity of soil legacy phosphorus in subtropical grasslands

description: Raw data for Qiu et al., "Unravelling spatial heterogeneity of soil legacy phosphorus in subtropical grasslands", published in Ecological Applications.
DOI: 10.6084/m9.figshare.25738068
title: Supplementary Material for: Foot problems in older adults presenting to a Falls and Balance Clinic

description: Introduction: Foot problems, including musculoskeletal problems, peripheral neuropathy, peripheral arterial disease and dermatologic pathology are common in older adults and are associated with increased risk of falling. Multicomponent podiatry interventions have been shown to reduce the incidence of falls. This paper aims to identify older adults requiring podiatry input in a Falls and Balance clinic; to describe the model of foot health care they receive; to explore cross-sectional associations between foot problems and function and ultimately demonstrate the role of podiatry input in the multidisciplinary management of falls risk.
Methods: Cohort study of patients attending a Falls and Balance Clinic for Comprehensive Geriatric Assessment. Demographic information was collected and functional independence, mobility, foot problems and footwear were assessed in clinic. 
Results: One-hundred and two patients were included; median age 79.3 [73-84.3] years, 68.6% female, 93.1% residing independently, 62.7% used a gait aid. Podiatry referrals were made in 80.4% of cases, with muscle weakness being the most common problem identified (90.2%); 74.8% were found to be wearing inappropriate footwear. Most patients received footwear education and half were prescribed foot and ankle strengthening exercises. Hallux and lesser toe weakness were associated with lower Short Physical Performance Battery scores (p&lt;0.001). 
Conclusion: The majority of older adults in the Falls and Balance Clinic required podiatry input, with foot weakness and inappropriate footwear being common reasons for referral. Those with weakness of the hallux and lesser toes had poorer balance and mobility, which is known to be associated with greater falls risk. This highlights the need for podiatry assessment and interventions as part of the multidisciplinary approach to the management of falls risk in older adults.
DOI: 10.6084/m9.figshare.26097226.v1
title: Data_Sheet_Multifractal Analysis of Neuronal Morphology in the Human Dorsal Striatum.xlsx

description: This study investigates the multifractal properties of two-dimensional neuron projections from the human dorsal striatum, focusing on potential morphological changes related to ageing and differences based on spatial origin within the nucleus. Using multifractal spectra, we analyzed various parameters, including generalized dimensions and Hölder exponents, to characterize the neurons' morphology.
DOI: 10.25375/uct.20367273
title: Lion Metapopulation Compliance

description: Data to accompany publication:<br>Wild lions in small, fenced reserves in South Africa conform to a meta-population<br>Published in: Ecological Solutions and EvidenceRaw data of translocations used in the analysis - includes year, source and destination reserves/provinces and number and sex of lions translocated
DOI: 10.3886/icpsr22840.v6
title: Midlife in the United States (MIDUS 2): Milwaukee African American Sample, 2005-2006
title: Version 6

description: As a refinement to Midlife in the United States (MIDUS 2), 2004-2006 (ICPSR 4652), a sample of African Americans from Milwaukee was included to examine health issues in minority populations. Areas of the city of Milwaukee, Wisconsin, were stratified according to the proportion of the population that were African American. Those areas with high concentrations were sampled at higher rates than areas with lower concentrations. Area probability sampling methods were used along with population counts from the 2000 United States Census to identify potential respondents. Field interviewers screened households to determine if they contained any African American adults. There was additional screening to achieve an appropriate age/gender distribution in a manner similar to what was done for the original MIDUS sample Midlife in the United States (MIDUS 1), 1995-1996 (ICPSR 2760). Milwaukee respondents were interviewed in their homes using a Computer Assisted Personal Interview (CAPI) protocol and afterwards asked to complete a Self-Administered Questionnaire (SAQ). All measures paralleled those used in the larger MIDUS 1 and 2 samples. After successful completion of the Project 1 survey, some participants were eligible to participate in other MIDUS projects (2 through 5). Survey data was collected for 592 individuals.
description: Response Rates: The overall response rate for the in-person interview was 70.7 percent. The overall SAQ response rate was 67.2 percent. The phone survey administration of the Telephone Assisted Cognitive Testing (TACT) had an overall response rate of 51.8 percent. Full discussion of the response rates for all of these portions of the MIDUS 2 Project 1 Milwaukee oversample are reported in the response rates section of Appendix A.
description: The sampling design was a stratified area probability sample of households in Milwaukee County, Wisconsin. The sampling frame included Census tracts in which at least 40 percent of the population was African American. The Census blocks were stratified by income, with roughly half coming from tracts in which the median household income was $40,000 or greater, and the rest coming from tracts in which the median household income was below $40,000.
description: Datasets: DS1: Midlife in the United States (MIDUS 2): Milwaukee African American Sample, 2005-2006
description: Adult African American residents aged 25-74 in Milwaukee, Wisconsin. Smallest Geographic Unit: city
description: computer-assisted personal interview (CAPI); computer-assisted telephone interview (CATI); face-to-face interview; mail questionnaire; telephone interviewThe title of this study was changed from Midlife Development in the United States (MIDUS II): Milwaukee African American Sample, 2005-2006, to Midlife in the United States (MIDUS 2): Milwaukee African American Sample, 2005-2006, on June 2, 2017.Additional information about the Midlife Development in the United States study can be found at the MIDUS website.
DOI: 10.5281/zenodo.10513179
title: Data from: Coupled vertical double quantum dots at single-hole occupancy

description: Figures and Data for the paper "Coupled vertical double quantum dots at single-holeoccupancy" by A. Ivlev and H. Tidjani et al.

See Readme file for details on replotting the figures.