DOI: 10.5281/zenodo.6186838
title: Data for article: A quantitative framework to infer the effect of traits, diversity and environment on dispersal and extinction rates from fossils

description: Supplementary information for: <strong>A quantitative framework to infer the effect of traits, diversity and environment on dispersal and extinction rates from fossils</strong> Torsten Hauffe, Mathias M. Pires, Tiago B. Quental, Thomas Wilke, and Daniele Silvestro Simulations Scripts Scenario1_SamplingHeterogeneity.R: Script to simulate biogeographic histories with sampling heterogeneity Scenario3_SealevelInvasion.R: Script to simulate biogeographic histories where sea level facilitates dispersal and invasion induces extinction Scenario3_DiversityDependence.R: Script to simulate diversity-dependent biogeographic histories Scenario4_TraitDependence.R: Script to simulate trait-dependent biogeographic histories Scenario5_CategoricalTraitDependence.R: Script to simulate trait-dependent biogeographic histories Results Scenario1_SamplingHeterogenetiy_alpha05.txt: Results of simulations scenario 1 with a sampling heterogeneity of alpha = 0.5 Scenario1_SamplingHeterogenetiy_alpha1.txt: Results of simulations scenario 1 with a sampling heterogeneity of alpha = 1 Scenario1_SamplingHeterogenetiy_alpha2.txt: Results of simulations scenario 1 with a sampling heterogeneity of alpha = 2 Scenario1_SamplingHeterogenetiy_alpha10.txt: Results of simulations scenario 1 with a sampling heterogeneity of alpha = 10 Scenario2_Independent_dispersal_and_extinction.txt: Results of simulation scenario 2 with sea-level independent dispersal and no invasion induced extinction Scenario2_Sealevel_dependent_dispersal_and_independent_extinction.txt: Results of simulation scenario 2 with sea-level dependent dispersal and no invasion induced extinction Scenario2_Sealevel_independent_dispersal_and_invasion_induced_extinction.txt: Results of simulation scenario 2 with sea-level independent dispersal and invasion induced extinction Scenario2_Sealevel_dependent_dispersal_and_invasion_induced_extinction.txt: Results of simulation scenario 2 with sea-level dependent dispersal and invasion induced extinction Scenario3_Independent_dispersal_and_extinction.txt: Results of simulations scenario 3 with diversity-independent dispersal and extinction Scenario3_Diversity_dependent_dispersal_and_independent_extinction.txt: Results of simulations scenario 3 with diversity-dependent dispersal and diversity-independent extinction Scenario3_Independent_dispersal_and_Diversity_dependent_extinction.txt: Results of simulations scenario 3 with diversity-dependent dispersal and diversity-independent extinction Scenario3_Diversity_dependent_dispersal_and_extinction.txt: Results of simulations scenario 3 with diversity-dependent dispersal and extinction Scenario4_Independent_dispersal_and_extinction.txt: Results of scenario 4 with trait-independent dispersal and extinction Scenario4_Trait_dependent_dispersal_and_independent_extinction.txt: Results of scenario 4 with trait-dependent dispersal and independent extinction Scenario4_Independent_dispersal_and_trait_dependent_extinction.txt: Results of scenario 4 with independent dispersal and trait-dependent extinction Scenario4_trait_dependent_dispersal_and_extinction.txt: Results of scenario 4 with trait-dependent dispersal and extinction Scenario5_CatTrait_dependent_dispersal_and_independent_extinction.txt: Results of model 2 with categorical traits (e.g family) influence dispersal but no influence of a category-specific continuous traits Carnivora BinnedOccurrence: Folder with 100 replicates of binned occurrences of max. 330 carnivoran genera throughout the Neogene BodyMass: Folder with 100 replicates of body mass for 330 carnivoran genera Sealevel: Folder with sea level through the Neogene Temperature: Folder with the temperature record of the Neogene Families: Folder with families as taxonomic proxy for phylogeny. FamilyGeneraNumeric.txt is the numeric coding used for the Bayesian analyses of carnivoran biogeography