cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5523/bris.1djg4enydvfi72q4b81rkoj3yo
title: Data from Garner et al 2020 (06-2020)

description: Dental implants are an increasingly popular way to replace missing teeth. Whilst implant survival rates are high, a small number fail soon after placement, with various factors, including bacterial contamination, capable of disrupting osseointegration. This work describes the development of chlorhexidine hexametaphosphate coatings for titanium that hydrolyse to release the antiseptic agent chlorhexidine. The aim was to develop a coating for titanium that released sufficient chlorhexidine to prevent biofilm formation, whilst simultaneously maintaining cytocompatibility with cells involved in osseointegration. The coatings were characterised with respect to physical properties, after which antibiofilm efficacy was investigated using a multispecies biofilm model, and cytocompatibility determined using human mesenchymal stem cells. The coatings exhibited similar physicochemical properties to some implant surfaces in clinical use, and significantly reduced formation of multispecies biofilm biomass up to 72 hours. One coating had superior cytocompatibility, with mesenchymal stem cells able to perform normal functions and commence osteoblastic differentiation, although at a slower rate than those grown on uncoated titanium. With further refinement, these coatings may have application in the prevention of bacterial contamination of dental implants at the time of surgery. This could aid a reduction in rates of early implant failure.
DOI: 10.6073/pasta/7afb95e698430420fdde142febac17c0
title: Long-term monitoring of micrometeorological conditions at the CAP LTER flux tower located in the west Phoenix, AZ neighborhood of Maryvale, ongoing since 2010

description: The CAP LTER maintains a 23 m urban eddy flux tower in the west Phoenix, AZ neighborhood of Maryvale (-112.1426 W, +33.4838 N). The tower is instrumented for long-term measurement of the covariance of turbulent eddy and radiative fluxes for the purposes of urban micrometeorological research. Additional micrometerological parameters, such as precipitation, are also measured. Select soil parameters were measured from 2012 through 2016. Eddy covariance data are collected and stored at two temporal resolutions: 10 Hz and 30-minute averages. Data presented here includes only 30-minute averages. Owing to large volumes, 10 Hz data are avialable only by request to the CAP LTER Information Manager (caplter.data@asu.edu).
DOI: 10.15468/2nyfxv
title: A new species of Dendropsophus (Anura, Hylidae) from southwestern Amazonia with a green bilobate vocal sac

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ferrao, Miqueias, Moravec, Jiri, Hanken, James, Lima, Albertina Pimentel (2020): A new species of Dendropsophus (Anura, Hylidae) from southwestern Amazonia with a green bilobate vocal sac. ZooKeys 942: 77-104, DOI: http://dx.doi.org/10.3897/zookeys.942.51864, URL: http://dx.doi.org/10.3897/zookeys.942.51864
DOI: 10.15468/2u324e
title: Four new species of Asian horned toads (Anura, Megophryidae, Megophrys) from southern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lyu, Zhi-Tong, Li, Yuan-Qiu, Zeng, Zhao-Chi, Zhao, Jian, Liu, Zu-Yao, Guo, Guo-Xin, Wang, Ying-Yong (2020): Four new species of Asian horned toads (Anura, Megophryidae, Megophrys) from southern China. ZooKeys 942: 105-140, DOI: http://dx.doi.org/10.3897/zookeys..47983, URL: http://dx.doi.org/10.3897/zookeys..47983
DOI: 10.15468/6yjnz9
title: A new species of the Rana japonica group (Anura, Ranidae, Rana) from China, with a taxonomic proposal for the R. johnsi group

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wan, Han, Lyu *, Zhi-Tong, Qi, Shuo, Zhao, Jian, Li, Pi-Peng, Wang, Ying-Yong (2020): A new species of the Rana japonica group (Anura, Ranidae, Rana) from China, with a taxonomic proposal for the R. johnsi group. ZooKeys 942: 141-158, DOI: http://dx.doi.org/10.3897/zookeys.942.46928, URL: http://dx.doi.org/10.3897/zookeys.942.46928
DOI: 10.15468/ybfzxh
title: A new species of the genus Hyalella (Crustacea, Amphipoda) from northern Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Marron-Becerra, Aurora, Hermoso-Salazar, Margarita, Rivas, Gerardo (2020): A new species of the genus Hyalella (Crustacea, Amphipoda) from northern Mexico. ZooKeys 942: 1-19, DOI: http://dx.doi.org/10.3897/zookeys.942.50399, URL: http://dx.doi.org/10.3897/zookeys.942.50399
DOI: 10.24431/rw1k45i
title: Effective Co-management of Marine Mammals in Alaska: Identifying Essential Components and Key Impediments (2018 - 2019)

description: We will develop a mutually agreed-upon working definition of co-management across partners, review existing cooperative agreements to identify commonalities and differences, and identify essential components of, and key impediments to, effective co-management relationships. Effective agreements include strong communication between partners, agreement on what information is used in management decisions (stock assessments, harvest data), and conflict resolution measures. We will compile and synthesize the collected information and, in conjunction with our review of cooperative documents and consideration of resource constraints, develop recommendations for enhancing the effectiveness of co-management relationships and, ultimately, improving the conservation of marine mammals. There is no scientific dataset for this project. The information collected was qualitative in the form of structured interviews and focus group discussions. As participants signed forms ensuring their confidentiality, the detailed contents of the specific interviews and focus groups are not available for public use. Included in this package for preservation are: Co-management review final report Sept 2019.pdf IRB Approved Audio and Photo Release Form.pdf IRB Approved Informed Consent Form.pdf IRB Approved Questions for ANO Members.pdf IRB Approved Questions for Federal Agency Staff.pdf IRB Approved Questions for Hunter Focus Groups.pdf
DOI: 10.24431/rw1k45j
title: Biomarker and water analysis data to assess the impact of oil, dispersant and dispersed oil on bay mussels at subarctic conditions in Alaska, 2016

description: This dataset includes the data associated with mussel exposure experiments conducted in March 2016 at the Alaska SeaLife Center in Seward, AK. Mussels were exposed to seawater, oil, dispersant or dispersed oil for 3 weeks and samples were taken at different time points. There are 10 Excel files that contain the following data: genetic damage, heat shock protein levels, hydrogen peroxide production, cytochrome P450 activity, RNA:DNA ratio, shell thickness, morphometrics and superoxide dismutase activity in mussels, and aliphatic and volatile organic compound analysis of water. Genetic damage was assessed using a microscope. Heat shock proteins were detected with a Western blot. Hydrogen peroxide production, P450 activity, RNA:DNA and superoxide dismutase activity were measured using colormetric or fluorescent assays. Morphometrics were measured using calipers and a scale. Shell thickness was measured with a micrometer. Aliphatics and volatile organic compounds were detected with mass spectroscopy. Data are presented as ten CSV files: NPRB-1522-NPRB-1522-Genetic-Dmg-Data.csv NPRB-1522-NPRB-1522-Heat-Shock-Protein-Data.csv NPRB-1522-NPRB-1522-VOC-Analysis.csv NPRB-1522-NPRB-1522-P450-Data.csv NPRB-1522-NPRB-1522-Shell-Thickness-Data.csv NPRB-1522-NPRB-1522-Aliphatics-Analysis.csv NPRB-1522-NPRB-1522-Hydrogen-Peroxide-Production-Data.csv NPRB-1522-NPRB-1522-RNA-DNA-Ratio-Data.csv NPRB-1522-NPRB-1522-Morphometric-Data.csv NPRB-1522-NPRB-1522-SOD-Activity-Data.csv This dataset was generated under NPRB project 1522.
DOI: 10.6073/pasta/bdec8164ac6bf6dfe6d770b6e720bfc6
title: University of Michigan Biological Station Weather Observations 1980 – Present

description: This data set includes daily year-round weather measurements and observations recorded at the University of Michigan Biological Station (UMBS) from 1980-present. Data primarily serves the purpose of benefitting UMBS researchers needing access to weather data as a confounding variable. Parameters include maximum and minimum temperatures, precipitation, snowfall, snowpack, and estimated cloud cover and type recorded daily at approximately 08:00. Maximum and minimum temperatures were measured at the Biological Station campus with National Weather Service liquid-in-glass thermometers housed in a Weather Service (a.k.a., Cotton Region) shelter located on State Road. Precipitation was measured with either a Belfort Rainfall Transmitter 5915 or an ETI NOAH IV Total Precipitation Gauge in the “UV Field” located immediately northwest of the Biological Station campus. Snowfall and snowpack were also measured in the UV Field on snowboards using National Weather Service according to National Weather Service snow measurement guidelines. Cloud cover was estimated in oktas and classified into one of the ten basic cloud types.
DOI: 10.24431/rw1k45k
title: SNP genotype data for assessing population structure among bearded seals in the Pacific Arctic

description: Data in this collection include genotypes (n= 240,560 loci) generated from samples collected from bearded seals (n=190) in the Pacific Arctic region, primarily the northern Bering and southeastern Chukchi Seas, between 1993 and 2015. Almost all of the samples were derived from harvested seals (n=179), while the remainder were collected from seals (n=3) killed by polar bears and from stranded animals (n=8). DNA was extracted from the seal samples at the Southwest Fisheries Science Center in La Jolla, CA, and then sent to the Genomic Diversity Facility (GDF) at Cornell University for library preparation and subsequent genotyping by sequencing (Elshire et al. 2011). The data provided consists of 1) ‘Data_NPRB1514_SampleInfo.csv’, which contains information on the source, sampling locality, and sampling date for all samples, and 2) a gzipped compressed vcf file ‘NPRB1514.all.vcf.gz’that contains the raw genotype data for all SNPs identified in the GDF pipeline, prior to applying any quality control filters. VCF is a format for holding SNP information that retains data on depth of coverage for each allele, allowing recalling of the genotypes as needed. This data set was subjected to quality control filtering (see final report for NPRB1514) prior to conducting population structure analyses. The FASTQ.gz files generated from the sequencing data can be provided upon request.
DOI: 10.24431/rw1k45l
title: Influenza evolution in synanthropic gulls, Cordova, Alaska, 2011-2016

description: This study tested whether the congregation of the glaucous-winged gull (GWGU: Larus glaucescens) at Cordova promotes amplification and reassortment of Influenza A Virus (IAV). Gulls epitomize the growing challenge associated with human-wildlife interactions and offer a valuable model for testing hypotheses regarding the dynamics of emerging disease. First, the study tracked the infection status of three classes of juvenile GWGU; hatch-years (HY), second-years (SY) and third-years (TY) to clarify their role in the dispersal of IAV between Cordova and the nearby gull breeding colony of Egg Island. Second, an innovative network analysis was used to identify reassortants and assessed viral mixing at the two sites. In addition, this study identified habitats of gulls associated with hotspots of viral evolution - findings that can be applied beyond Alaska to guide surveillance and control efforts of pest bird populations worldwide. Data: Data generated includes a list of the samples collected from glaucous-winged gulls; fecal, oropharyngeal or cloacal swabs and the influenza status (positive/negative) of each sample. Each sample is time and location-stamped. Each sample entry also includes ecological data such as the age composition (hatch-years, second-years, third-years and adults) of the flocks being sampled, expressed as a proportion (%). For the subset of samples that were acquired through trapping and had the bird in hand, morphometric measurements, antibody status (positive/negative) and banding data are also included. The time period of the collection starts in March 2011 and ends in October 2016. These data are presented as two csv files: Glaucous-winged 20gulls_capture_data_20170830.csv Glaucous-winged 20gulls_capture_data_20170830.csv This dataset was generated as part of NPRB project 1411
DOI: 10.24431/rw1k45m
title: Determining Marine Mammal Distribution and Ambient Noise Using Passive Acoustic Deployments in the Northern Bering Sea and Bering Strait Region, 2015-2017

description: In this study, we integrated and analyzed new and existing sound recordings from the northern Bering and southern Chukchi Seas to provide data on marine mammal presence and noise levels for this area. Sound recordings collected in numerous biologically important and poorly studied areas were analyzed to determine marine mammal presence through the detection of their vocalizations. These recordings, made throughout the year were collected from different acoustic monitoring projects at strategic locations, such as the Bering Strait and Anadyr Strait, west of St. Lawrence Island. The resulting data from previous deployments (spanning 5 years), as well as strategic new deployments, constituted an important baseline from which were assessed for both ambient noise (natural and anthropogenic) and biological patterns, and allowed us to anticipate future impacts associated with increasing shipping, resource extraction and climate change. Data are presented as two CSV files: NPRB1511_Deployments_metadata.csv NPRB1511_Marine_Mammal_detections_metadata.csv Result figures from study calculations are included in folders corresponding to month of data collection. This dataset was generated as part of NPRB project 1511
DOI: 10.24431/rw1k45n
title: Amino acid stable carbon and nitrogen measurements for polar bear red blood cell, serum, and muscle tissue in the Beaufort Sea, 2008-2010

description: These data are related to the physiological processes of fasting and feeding during natural, annual cycle of the polar bear. This project is important because it helps us understand the complete natural history of this species. Polar bears are unique in multiple ways, such as being the most carnivorous of the bear species, functioning as links between biological processes below and above the sea ice. Tissue samples were collected from polar bears in the Southern Beaufort Sea near the northern coast of Alaska from 2008-2010. Stable carbon and nitrogen isotope measurements were performed at the Center for Stable Isotopes at the University of New Mexico 2015-2017. Estimating the extent and timing of mortality caused by loss of energy reserves is a key component for understanding and predicting the effects of sea ice loss on bear survival. We found that throughout their annual cycle, polar bears in the Southern Beaufort Sea experience dynamic changes in the sources of carbon and nitrogen used for amino acid synthesis and protein maintenance. Data are presented as three csv files pertaining to red blood cells, serum, and muscle tissue: NPRB.project1513.RBCdata.csv NPRB.project1513.Muscledata.csv NPRB.project1513.Serumdata.csv
DOI: 10.5519/0036345
title: Evaluation of DNA barcode libraries used in the UK and developing an action plan to fill priority gaps: Appendices 3 and 4

description: Supplementary data for the DEFRA Centre of Excellence for DNA Methods report: Evaluation of DNA barcode libraries used in the UK and developing an action plan to fill priority gaps.\r\nAppendix 3: Priority species identified during the survey and consultation\r\nAppendix 4: Raw data for gap analyses
DOI: 10.5523/bris.1c46xjhyp8dz221zsfg622y8r9
title: Data fusion of multi-view ultrasonic imaging for characterisation of large defects

description: Supporting data for paper Rhodri L.T. Bevan, Nicolas Budyn, Jie Zhang, Anthony J. Croxford, So Kitazawa and Paul D. Wilcox, "Data fusion of multi-view ultrasonic imaging for characterisation of large defects" in IEEE Trans. Ultrasonics, Ferroelectrics and Frequency Control, 2020.
DOI: 10.6073/pasta/85e49b7372ac8a75b707f1eaa8c0dcd8
title: Hubbard Brook Experimental Forest: Ice Storm Experiment - fine root biomass and ingrowth

description: Fine root (&lt; 1mm diameter) biomass and fine root growth were measured in the ISE plots to test the hypothesis that ice damage to the canopy would cause a reduction in root production. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.6073/pasta/4cd29083a26340a38d0d23adfca0cbca
title: Meteorological data from El Verde Field Station: NADP Tower

description: Meteorological sensors are located at the top of a 20 m tower, the NADP Tower, behind the main buildings of El Verde Field Station, 350 masl. No large trees are present near the tower. Sensors are connected to a Campbell 1000X data logger, with a storage module, and downloaded every two weeks using a wireless radio connection from the laboratory to the tower. Data are compiled at the station before it is made available. The station was initiated in 2000. Complementary manual measurements of rainfall and maximum and minimum air temperatures are taken on a daily basis at a separate physical location.
DOI: 10.6073/pasta/6b34e8c6805d8cdf4d2995240ee3602b
title: Lake Sunapee Parameter Set and Driver Files for the General Lake Model Aquatic EcoDynamics (GLM AED)

description: Base driver data and parameter sets required for the General Lake Model - Aquatic EcoDynamics (GLM-AED) model simulation of Lake Sunapee, NH, USA. Additional files needed to run the simulation are the downscaled hourly meteorological data (North American Land Data Assimilation System NLDAS-2, website: disc.gsfc.nasa.gov), observed water temperature profiles and dissolved oxygen at the deep site in the lake (edi.463.1; doi.org/10.6073/pasta/846a36bf6fd704e508511e5f8a2ab3b5), and stream water temperature (edi.466.1; doi.org/10.6073/pasta/12a18d9d178b17d2ac333930f3efca9f).
DOI: 10.6073/pasta/a7fa8e36847074f2a7d7cb644360ed2f
title: Resource Gradient Study Management at the Kellogg Biological Station, Hickory Corners, MI (2000 to 2020)

description: Dataset Abstract The log of the resource gradient study agronomic management. A “browsable” interface to the aglog is available at https://aglog.kbs.msu.edu original data source http://lter.kbs.msu.edu/datasets/110
DOI: 10.15468/e5r3ep
title: A new species of Notomastus (Annelida, Capitellidae) from southern China, with remarks on its morphology and distribution

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lin, Jun-Hui, Garcia-Garza, Maria E., Lyu, Ming-Xin, Wang, Jian-Jun (2020): A new species of Notomastus (Annelida, Capitellidae) from southern China, with remarks on its morphology and distribution. ZooKeys 946: 1-16, DOI: http://dx.doi.org/10.3897/zookeys.946.50662, URL: http://dx.doi.org/10.3897/zookeys.946.50662
DOI: 10.15468/esgjff
title: A new species of the cave-fish genus Lucifuga (Ophidiiformes, Bythitidae), from eastern Cuba

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hernandez, Damir, Moller, Peter Rask, Casane, Didier, Garcia-Machado, Erik (2020): A new species of the cave-fish genus Lucifuga (Ophidiiformes, Bythitidae), from eastern Cuba. ZooKeys 946: 17-35, DOI: http://dx.doi.org/10.3897/zookeys.946.51373, URL: http://dx.doi.org/10.3897/zookeys.946.51373
DOI: 10.6073/pasta/3c4c64c828c5281b28aa355bdcb81363
title: Agronomic Soil Test Results at the Kellogg Biological Station, Hickory Corners, MI (1992 to 2019)

description: Dataset Abstract Soil samples are taken annually (usually in the Fall) for fertilizer recommendations and analyzed by the Michigan State University Soils Laboratory. The soil samples are taken from the annual treatments T1 though T4 and T6. original data source http://lter.kbs.msu.edu/datasets/71
DOI: 10.6073/pasta/a659bcbe724509f8a49b5f7ac1b36427
title: KBS GLBRC Experiment at the Kellogg Biological Station, Hickory Corners, MI (1988 to 2019)

description: Dataset Abstract Great Lakes Bioenergy Research Consortium Sustainably Experiment activity logs and background information. original data source http://lter.kbs.msu.edu/datasets/63
DOI: 10.6073/pasta/ed1966bf16d725dacf742dd20be8c303
title: PBG04 Reproductive effort of Big Bluestem, Indiangrass and Little Bluestem in the Patch-Burn Grazing Experiment at Konza Prairie

description: 'PBG' datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. PBG041 includes data on flowering stem height (m) of three dominant prairie grasses: Andropogon gerardii (ANGE), Sorghastrum nutans (SONU), and Schizachyrium scoparium (ANSC). PBG042 includes flowering stem density (no. per sq. m) and mass (grams per sq. m) for the same grass species.
DOI: 10.15468/38z3bb
title: A new species of the horned toad Megophrys Kuhl & Van Hasselt, 1822 (Anura, Megophryidae) from southwest China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xu, Ning, Li, Shi-Ze, Liu, Jing, Wei, Gang, Wang, Bin (2020): A new species of the horned toad Megophrys Kuhl & Van Hasselt, 1822 (Anura, Megophryidae) from southwest China. ZooKeys 943: 119-144, DOI: http://dx.doi.org/10.3897/zookeys.943.50343, URL: http://dx.doi.org/10.3897/zookeys.943.50343
DOI: 10.15468/7feh6k
title: New fossils of Amphicyonidae (Carnivora) from the middle Miocene (MN 6) site of Carpetana (Madrid, Spain)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Siliceo, Gema, Morales, Jorge, Antón, Mauricio, Salesa, Manuel J. (2020): New fossils of Amphicyonidae (Carnivora) from the middle Miocene (MN 6) site of Carpetana (Madrid, Spain). Geodiversitas 42 (15): 223-238, DOI: 10.5252/geodiversitas2020v42a15
DOI: 10.15468/auszpw
title: An illustrated key to the fiddler crabs (Crustacea, Decapoda, Ocypodidae) from the Atlantic coast of Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Masunari, Setuko, Martins, Salise Brandt, Anacleto, Andre Fernando Miyadi (2020): An illustrated key to the fiddler crabs (Crustacea, Decapoda, Ocypodidae) from the Atlantic coast of Brazil. ZooKeys 943: 1-20, DOI: http://dx.doi.org/10.3897/zookeys.943.52773, URL: http://dx.doi.org/10.3897/zookeys.943.52773