cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9c2th2k
title: Stable carbon and nitrogen isotope data for Siberian barn swallow subspecies collected during the breeding season

description: This dataset includes stable carbon and nitrogen isotope values for the inner tail retrices of three subspecies of barn swallow (Hirundo rustica rustica, H. r. tytleri, and H. r. gutturalis). Sampling was conducted in Russia (summer 2013), China (summer 2014), Mongolia (summer 2014), Japan (summer 2014), and western China (summer 2015) using mist nets. Stable carbon and nitrogen isotope data are useful proxies for diet and at broad spatial scales have the potential to constrain geographic distributions at the sub-population level. These data were used in tandem with molecular genetics to explore the extent to which a migratory divide explains the strength of reproductive isolation. There are two files in this dataset: 1) A comma delimitated machine-readable file (*.csv) that represents the data dictionary, and 2) a comma delimited machine-readable file (*.csv) containing the data.
DOI: 10.5066/p9cgdpyp
title: Stable carbon isotope and wood component concentration data for riparian cottonwood tree rings, Little Missouri River, North Dakota

description: This dataset includes stable carbon isotope values, lignin, cellulose, and hemicellulose concentrations (expressed as percent of ash-free dry mass) for riparian cottonwood (Populus deltoides) tree rings growing on the Little Missouri River floodplain, Theodore Roosevelt National Park, North Dakota. Drought stress induces stomatal closure and the carbon isotope ratio of annual tree rings tends to be negatively correlated with water availability, especially in dry environments. However, lignin and hemicellulose can obscure annual trends in carbon isotope compositions as these wood components can differ in ?13C relative to pure cellulose. We measured ?13C of whole wood in annual tree rings from seven trees with oldest rings that ranged from 1791 to 1972. These data were used in tandem with lignin, cellulose, and hemicellulose concentrations to explore changes with tree age and the extent to which ?13C correlates with river flow, precipitation, and temperature. There are four files in this dataset: 1) a comma delimited machine-readable file (*.csv) that represents the data dictionary for the stable isotope data, 2) a comma delimited machine-readable file (*.csv) that represents the data dictionary for the lignin, hemicellulose, and cellulose concentration data, 3) a comma delimited machine-readable file (*.csv) containing the stable isotope data, and 4) a comma delimited machine-readable file (*.csv) containing the lignin, hemicellulose, and cellulose concentration data.
DOI: 10.5066/p9csrabt
title: Riparian vegetation, topography, sediment quality, and river corridor geomorphology in the Lower Virgin River, Nevada and Arizona, before (2010) and after (2011-2012) a 40-year return period flood

description: The data release presents observations of riparian vegetation, topography, sediment quality, and river corridor geomorphology in four river reaches of the Lower Virgin River extending downstream 62 river kilometers (rkm) from near the town of Littlefield (AZ) and the Arizona-Nevada border at rkm 119. Methods included field observations and analysis of remotely-sensed data before (2010) and after (2011-2012) a 40-year return period flood (December 2010, at the gaging station 'Virgin River near Littlefield'; (USGS gage #09415000)). The data release includes four .csv files related to field observations: UTM coordinates of field transect locations; vegetation and geomorphology; species codes; and sediment quality. The data release also includes three shapefiles describing the river corridor geomorphology obtained through the interpretation of airborne color orthophotography: before the flood; after the flood; and the union of these two. Finally, there are four metadata (.xml) files - one associated with all four of the .csv files, and one for each of the shapefiles.
DOI: 10.5519/qd.ajhdvlqs
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1005 records)
DOI: 10.5066/p9cw05wb
title: Water chemistry and land cover attributes for The Loch and Sky Pond, Rocky Mountain National Park

description: Water chemistry and land cover attributes for The Loch and Sky Pond, Rocky Mountain National Park. These data were part of a larger survey (data from other sources) used to describe drivers of change to mountain lake productivity.
DOI: 10.5066/p9cxdc8v
title: Detections of bison from helicopter and aerial thermal infrared imagery in Grand Canyon National Park, 2019-2021

description: These data are detections of bison in Grand Canyon National Park made during helicopter surveys between 2019 and 2021, and an aerial infrared imagery survey done in February 2020.
DOI: 10.6084/m9.figshare.21547125
title: Chinese dwarf cherry [Cerasus humilis (Bge.) Sok.] polyphenol extract (OPE) promote osteoblastic differentiation in MC3T3-E1 cells and reduce ovariectomy-induced bone loss in rats via the calcium/AMPK signaling pathway

description: Osteoporosis (OP) is a systemic bone disease associated with aging and imbalance in bone metabolism. In this study, the osteoprotective activity of Chinese dwarf cherry (<em>Cerasus humilis)</em> polyphenol extract (OPE) was characterized <em>in vitro</em> and <em>in vivo</em>, and the osteoprotective mechanism was studied.
DOI: 10.6084/m9.figshare.21547890.v3
title: Lista das espécies registradas no Maciço de Baturité com dados de origem, status de conservação, registro no herbário e municípios.

description: <strong>Lista florística para relatório final de bolsista (Vivian Oliveira Amorim) do projeto "Planejamento, Criação e Implementação de Unidades de Conservação no Ceará: subsídios científicos para políticas públicas ambientais". Os resultados também fazem parte do Diagnóstico de Vegetação e Flora do Maciço de Baturité, realizado em 2022 (Ceará, Brasil). </strong> <br> O Maciço de Baturité tem sido alvo de coletas de diversos botânicos catalogando a diversidade desde 1859, um dos primeiros registros em herbário, até os dias atuais. Além de esforços esporádicos de registros da biodiversidade da região, pode ser destacado alguns trabalhos pioneiros na identificação e registro formal das espécies fornecendo uma base sólida para reconhecimento da flora, entre eles, o livro intitulado “Diversidade e conservação da Biota na Serra de Baturité” (OLIVEIRA; ARAÚJO, 2007), uma lista florística (SILVERA et al., 2020) e também estudos taxonômicos no território cearense (DA SILVA et al., 2020; COSTA REBOUÇAS et al., 2021; JARDIM; SOUZA; LOIOLA, 2020; LIMA; MANSANO; ARAÚJO, 2012; LOIOLA et al., 2020; NETO et al., 2014; NETO; CORDEIRO; LOIOLA, 2014; SAMPAIO et al., 2019; VERSIEUX et al., 2013). Com base nestes trabalhos, esforços atuais de coleta e processos de acurácia taxonômica em bancos de dados online, tem-se uma listagem de 1073 espécies pertencentes a 559 gêneros e 125 famílias de angiospermas. <br> Lista das espécies registradas no Maciço de Baturité com dados de origem, status de conservação, registro no herbário e municípios. <strong>Legenda - O</strong>: Origem; E: Exótica; N: Nativa. <strong>ST: </strong>Status de conservação; CR: Criticamente em perigo; DD: Dados insuficientes; EN: Em perigo; LC: Pouco preocupante; NE: Não avaliado; NT: Quase ameaçada; VU: Vulnerável. <strong>Mun.</strong>: Município; Aca.: Acarape; Arac.: Aracoiaba; Arat.: Aratuba; Bar.: Barreira; Bat.: Baturité; Cap.: Capistrano; Gua.: Guaramiranga; Ita.: Itapiúna; Mul.: Mulungu; Pac.: Pacoti; Pal.: Palmácia; Red.: Redenção.
DOI: 10.6084/m9.figshare.21547890
title: Lista das espécies registradas no Maciço de Baturité com dados de origem, status de conservação, registro no herbário e municípios.

description: <strong>Lista florística para relatório final de bolsista (Vivian Oliveira Amorim) do projeto "Planejamento, Criação e Implementação de Unidades de Conservação no Ceará: subsídios científicos para políticas públicas ambientais". Os resultados também fazem parte do Diagnóstico de Vegetação e Flora do Maciço de Baturité, realizado em 2022 (Ceará, Brasil). </strong> <br> O Maciço de Baturité tem sido alvo de coletas de diversos botânicos catalogando a diversidade desde 1859, um dos primeiros registros em herbário, até os dias atuais. Além de esforços esporádicos de registros da biodiversidade da região, pode ser destacado alguns trabalhos pioneiros na identificação e registro formal das espécies fornecendo uma base sólida para reconhecimento da flora, entre eles, o livro intitulado “Diversidade e conservação da Biota na Serra de Baturité” (OLIVEIRA; ARAÚJO, 2007), uma lista florística (SILVERA et al., 2020) e também estudos taxonômicos no território cearense (DA SILVA et al., 2020; COSTA REBOUÇAS et al., 2021; JARDIM; SOUZA; LOIOLA, 2020; LIMA; MANSANO; ARAÚJO, 2012; LOIOLA et al., 2020; NETO et al., 2014; NETO; CORDEIRO; LOIOLA, 2014; SAMPAIO et al., 2019; VERSIEUX et al., 2013). Com base nestes trabalhos, esforços atuais de coleta e processos de acurácia taxonômica em bancos de dados online, tem-se uma listagem de 1073 espécies pertencentes a 559 gêneros e 125 famílias de angiospermas. <br> Lista das espécies registradas no Maciço de Baturité com dados de origem, status de conservação, registro no herbário e municípios. <strong>Legenda - O</strong>: Origem; E: Exótica; N: Nativa. <strong>ST: </strong>Status de conservação; CR: Criticamente em perigo; DD: Dados insuficientes; EN: Em perigo; LC: Pouco preocupante; NE: Não avaliado; NT: Quase ameaçada; VU: Vulnerável. <strong>Mun.</strong>: Município; Aca.: Acarape; Arac.: Aracoiaba; Arat.: Aratuba; Bar.: Barreira; Bat.: Baturité; Cap.: Capistrano; Gua.: Guaramiranga; Ita.: Itapiúna; Mul.: Mulungu; Pac.: Pacoti; Pal.: Palmácia; Red.: Redenção.
DOI: 10.5066/p9dq5inm
title: Predicted (1989-2015) and forecasted (2015-2114) estimates for rate of change and recovery of sagebrush (Artemisia spp.) following energy development in southwestern Wyoming, USA

description: In 'Predicted (1989-2015) and forecasted (2015-2114) estimates for rate of change and recovery of sagebrush (Artemisia spp.) following energy development in southwestern Wyoming, USA', we provide spatially- and temporally-explicit maps of predictions for the rate of change and time to recovery and percent recovery of sagebrush cover after 100 years (Monroe et al. In Review). The rasters beginning with 'sage.rate' depict the predicted annual rate of change in sagebrush cover for each timestamp interval, across the Wyoming Landscape Conservation Initiative area (WLCI) in southwestern Wyoming, USA (1989-2015). The files 'time_to_recov.tif' and 'perc_recov.tif' are rasters for predicted time to recovery and percent recovery after 100 years, respectively, following energy development across the WLCI area. Literature cited: Monroe, A. P., C. L. Aldridge, M. S. O'Donnell, D. J. Manier, C. G. Homer, and P. J. Anderson. 2020. Using remote sensing products to predict recovery of vegetation across space and time following energy development. Ecological Indicators 110:105872.
DOI: 10.5066/p9dwkb3z
title: Data on Utah prairie dog body condition and reproductive success, Awapa Plateau, Utah, USA, 2013-2016

description: Data on body condition and reproduction of Utah prairie dogs at 5 colonies on the Awapa Plateau, Utah, USA, June-August 2013-2016. Utah prairie dogs were live-trapped and sampled on 5 colonies. We recorded the age (juvenile/adult) and mass (nearest 5 grams) of each prairie dog and marked its ears and body with metal tags and passive integrated transponders, respectively, for permanent identification. We measured each prairie dog's right hind foot length (nearest millimeter). We indexed each adult prairie dog's body condition as the ratio between its mass and hind-foot length. Prairie dogs were allowed to recover from anesthesia and released at their trapping locations. We indexed prairie dog reproduction, by colony and year, as the ratio of the number of juveniles per adult (juvenile:adult ratios). Funding and logistical support were provided by the U. S. Geological Survey (USGS), Western Association of Fish and Wildlife Agencies, and Colorado State University. Fieldwork was completed by the USGS Fort Collins Science Center, and lab work and flea identifications were completed by the USGS National Wildlife Health Center.
DOI: 10.5066/p9ecfi2o
title: Radiogenic strontium isotope data for non-native walleye otoliths collected from select areas of the Upper Colorado River Basin

description: This dataset includes radiogenic strontium isotope compositions of non-native walleye otoliths collected from select areas of the Upper Colorado River Basin (UCRB). Strontium isotope data have been widely used to assess natal areas for a variety of fish species. Following on previous work, this project sought to fill data gaps for walleye collected from the Colorado River (river miles 11-109.3), the lower Green River, Lake Powell, and McPhee Reservoir. Using laser ablation-multicollector-inductively coupled plasma-mass spectrometry (MC-ICP-MS), otolith strontium isotope compositions were measured just outside of the sulcus and on the periphery of the most recent annual growth layer. These data potentially provide information on natal origin (sulcus) and recent residency (most recent annual growth layer). There are two files in this dataset: 1) A comma delimited machine-readable file (*.csv) that represents the data dictionary, and 2) a comma delimited machine-readable file (*.csv) containing the data.
DOI: 10.5066/p9eeoazk
title: Taxonomic composition of environmental DNA acquired by filtration from the St. Regis River, New York

description: Environmental DNA (eDNA) surveys have become important tools for monitoring aquatic biodiversity. Barcode sequencing of eDNA generates community profiles that, while potentially biased in both capture and amplification, can nonetheless yield high information content per unit cost. While factors affecting eDNA capture and amplification have been heavily studied, watershed-scale assessments of fish communities and our confidence in such have been less frequent. We performed an initial watershed-scale characterization of fish eDNA using rapid, low-volume filtering with replicate and control samples scaled for a single Illumina MiSeq flow cell, using the mitochondrial 12S ribosomal RNA locus for taxonomic profiling. Our bioinformatic approach included 1) direct estimation of sequencing error from unambiguous mappings (alignments) and simulation of error in taxonomic assignment under various mapping criteria; 2) binning of species based on inferred assignment error rather than by taxonomic rank; and 3) visualization of mismatch distributions to facilitate discovery of distinct haplotypes attributed to the same reference. Our approach was implemented for the St. Regis River, New York, United States, which supports a valuable recreational fishery and has been a target of restoration activities. We used a large record of St. Regis-specific observations to validate our assignments. We found that 300 mL drawn through 25-mm filters yielded greater than 5 ng/uL DNA at most sites in August and September, which was an approximate threshold for generating strong sequencing libraries in our hands. Using inferred sequence error rates, we binned 12S references for 110 species on a state-level checklist into 85 single-species bins and seven multispecies bins. Of 48 taxonomic bins actually observed in the St. Regis, we detected eDNA consistent with 40, with an additional four detections flagged as potential contaminants post-collection. Sixteen unobserved species detected by eDNA ranged from plausible to implausible based on distributional data, whereas six observed species had no 12S reference sequence.
DOI: 10.5066/p9efgr4f
title: Lignin phenol data for solid phase peat cores collected from the Alligator River and Great Dismal Swamp National Wildlife Refuges

description: This dataset includes lignin phenol monomer concentrations normalized to 100 mg of organic carbon. These analyses were conducted on select intervals from peat cores collected at the Alligator River (AR) and Great Dismal Swamp (GDS) National Wildlife Refuges in North Carolina and Virginia/North Carolina, USA, respectively. The eight lignin phenol monomers provide unique proxy information on the source, character, and state of decomposition of soil organic matter. Peat cores from the GDS were collected from three main forest communities; pocosin (POC; dominated by pond pine in the canopy and shrubs), Atlantic white cedar (AWC: called CDR to differentiate from the AR cores), and red maple-black gum (MPL). The GDS has been subject to intensive drainage and selective removal of AWC over the last two centuries. In contrast, the AR site represents an intact, undrained stand of AWC, a coastal plain wetland ecotype that has become increasingly rare on the east coast of the U.S. The contrast enabled us to assess the carbon chemistry of GDS peats, including the decomposition status as a result of these long-term disturbances. There are two files in this dataset: 1) a comma delimited machine-readable file (*.csv) that represents the data dictionary, and 2) a comma delimited machine-readable file (*.csv) containing the data.
DOI: 10.5066/p9f4yr6p
title: Metagenomic detection and reconstruction of Lake Sinai Virus from honey bee sequence data

description: A survey of public honey bee sequence data was performed to detect infections by Lake Sinai Virus (LSV). The Sequence Read Archive of the National Center for Biotechnology Information (NCBI) was queried to identify accessions of RNA sequence data derived from honey bee. These were filtered as described below and then up to 50 million reads or read pairs were downloaded and searched against a reference database of conserved LSV sequence. Accessions with matches above a specified threshold were downloaded in their entirety and assembled into longer contiguous sequences (contigs). The result contigs were searched against each open reading frame (ORF) of the reference LSV genome present in the NCBI database (accession NC_032433.1) and matching regions from each contig. These ORF sequences were aligned with additional sequences identified in NCBI databases through the BLAST web service. These alignments provide the basis for computing phylogenetic trees, rates of nucleotide substitution, codon usage bias, and other evolutionary parameters.
DOI: 10.5066/p9fos7z8
title: Spatial mark-recapture and chew card rat data on Guam and Rota, 2018-2019

description: We provide four datasets: Mark recapture and trapping effort, Grid layout, Chew cards, and Trail camera validation. Mark recapture and trapping effort has one row for every live-trap night, including the unique grid identification code, date of trap check, cumulative rain amount from the 24-hr period before the trap check, unique trap identification, trap status, unique individual rat identification (ID) and associated morphometrics, and rat fate. Grid layout includes the unique grid identification code, unique trap identification, and GPS coordinates of the traps. Chew cards has one row for every chew-card night, including the unique grid identification code, date of chew-card check, unique chew-card identification, and whether the [...]
DOI: 10.5066/p9fzzu8t
title: Non-native and synanthropic bird data derived from 2010-2012 Breeding Bird Survey and associated landscape metrics from 2011 NLCD

description: Locations of and proportional abundance of non-native and synanthropic passerines were extracted from Breeding Bird Survey (BBS) data from 2010-2012. Information characterizing the spatial variation and the associated amount, aggregation, and diversity of developed and agricultural land cover types was extracted from the National Land Cover Datasets of 2011. Data supported analyses in the publication: Sofaer, H.R., C.H. Flather, C.S. Jarnevich, K.P. Davis, and L. Pejchar. Human-associated species dominate passerine communities across the United States. Global Ecology and Biogeography.
DOI: 10.5066/p9g0n0tn
title: River Channel Survey Data, Redwood Creek, California, 1953-2013

description: Dr. Richard Janda of the USGS began a channel monitoring program in Redwood Creek in northern coastal California in 1973. The USGS continued this work through 2013, when the Research Geologist, Dr. Mary Madej retired. This effort produced 40 years of channel change data in rivers that were disrupted by severe erosion following timber harvest of old-growth redwood forests, a portion of the program's data (plus 1953 data) has been preserved in this data release. Original field surveys documented bank erosion, aggradation, and degradation at 60 cross-sectional transects at annual or biannual timesteps. Three river reaches also have long-term longitudinal channel bed surveys which document the distribution and development of pool channel features and other aquatic habitat units. Preserved survey data are provided in CSV format on the Cross Sectional Data and Longitudinal Profile Data ScienceBase child items, along with respective metadata records. Project level metadata and supplementary materials are available on the main ScienceBase page.
DOI: 10.5066/p9g0utkf
title: Location and phenology observations for beaked hazelnut (Corylus cornuta), Oregon grape (Mahonia aquifolium), and salal (Gaultheria shallon) in western North America

description: These data provide the locations and phenological dates of three shrub species: beaked hazelnut (Corylus cornuta), Oregon grape (Mahonia aquifolium), and salal (Gaultheria shallon), collected from various publicly available data sources including data from USFS Forest Inventory and Analysis program, USFS R-6 Ecology Program, US National Park Service, USDI Bureau of Land Management, USA National Phenology Network, the Consortium of PNW Herbaria, the Wilbur L. Bluhm Plant Phenology Study, GBIF, and iNaturalist, as well phenology data collected from the Olympia Forestry Sciences Laboratory in Olympia, Washington.
DOI: 10.5066/p9g9ccqe
title: Sample collection information and whole genome data for Greater and Gunnison Sage-grouse range generated in the Molecular Ecology Lab during 2015-2018

description: This dataset contains sample collection information for whole genome sequences of Gunnison and Greater Sage-grouse. These data were collected in order to examine patterns of adaptive genetic variation in Greater and Gunnison Sage-grouse. The data is archived in GenBank at the following URL https://www.ncbi.nlm.nih.gov/bioproject/531321.
DOI: 10.5066/p9gi27px
title: Data on prairie dogs, plants, arthropod biomass, and birds for Thunder Basin, Wyoming in 2017

description: Data were collected in 2017 by researchers at the USGS, USDA-ARS, and University of Wyoming on the food webs of plants, prairie dogs, arthropods, and birds in the Thunder Basin National Grassland. Data were collected from 87 sites in order to parameterize a structural equation model linking prairie dog impacts to changes in vegetation, arthropods, and birds. Abiotic information such as topographic wetness index, terrain roughness, and soil characteristics were estimated at the same set of plots in order to account for abiotic variation across the landscape.
DOI: 10.5066/p9grf34e
title: Influences of Potential Oil and Gas Development and Future Climate on Sage-Grouse Declines and Redistribution

description: This project represents the data used in "Influences of potential oil and gas development and future climate on sage-grouse declines and redistribution." The data sets describe greater sage-grouse (Centrocercus urophasianus) population change, summarized in different boundaries within the Wyoming Landscape Conservation Initiative (WLCI; southwestern Wyoming). Population changes were based on different scenarios of oil and gas development intensities, projected climate models, and initial sage-grouse population estimates.