cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8069309.v2
title: Robust Clustering With Subpopulation-Specific Deviations

description: The National Birth Defects Prevention Study (NBDPS) is a case-control study of birth defects conducted across 10 U.S. states. Researchers are interested in characterizing the etiologic role of maternal diet, collected using a food frequency questionnaire. Because diet is multidimensional, dimension reduction methods such as cluster analysis are often used to summarize dietary patterns. In a large, heterogeneous population, traditional clustering methods, such as latent class analysis, used to estimate dietary patterns can produce a large number of clusters due to a variety of factors, including study size and regional diversity. These factors result in a loss of interpretability of patterns that may differ due to minor consumption changes. Based on adaptation of the local partition process, we propose a new method, robust profile clustering, to handle these data complexities. Here, participants may be clustered at two levels: (1) globally, where women are assigned to an overall population-level cluster via an overfitted finite mixture model, and (2) locally, where regional variations in diet are accommodated via a beta-Bernoulli process dependent on subpopulation differences. We use our method to analyze the NBDPS data, deriving prepregnancy dietary patterns for women in the NBDPS while accounting for regional variability. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.9103811.v2
title: Statistical Topology and the Random Interstellar Medium

description: We use topological methods to investigate the small-scale variation and local spatial characteristics of the interstellar medium (ISM) in three regions of the southern sky. We demonstrate that there are circumstances where topological methods can identify differences in distributions when conventional marginal or correlation analyses may not. We propose a nonparametric method for comparing two fields based on the counts of topological features and the geometry of the associated persistence diagrams. We investigate the expected distribution of topological structures quantified through Betti numbers under Gaussian random field (GRF) assumptions, which underlie many astrophysical models of the ISM. When we apply the methods to the astrophysical data, we find strong evidence that one of the three regions is both topologically dissimilar to the other two and not consistent with an underlying GRF model. This region is proximal to a region of recent star formation whereas the others are more distant. Supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.
DOI: 10.6084/m9.figshare.7792106.v1
title: Informed proposals for local MCMC in discrete spaces

description: There is a lack of methodological results to design efficient Markov chain Monte Carlo (MCMC) algorithms for statistical models with discrete-valued high-dimensional parameters. Motivated by this consideration, we propose a simple framework for the design of informed MCMC proposals (i.e. Metropolis-Hastings proposal distributions that appropriately incorporate local information about the target) which is naturally applicable to discrete spaces. Using Peskun-type comparisons of Markov kernels, we explicitly characterize the class of asymptotically-optimal proposal distributions under this framework, which we refer to as <i>locally-balanced</i> proposals. The resulting algorithms are straightforward to implement in discrete spaces and provide orders of magnitude improvements in efficiency compared to alternative MCMC schemes, including discrete versions of Hamiltonian Monte Carlo. Simulations are performed with both simulated and real data sets, including a detailed application to Bayesian record linkage. A direct connection with gradient-based MCMC suggests that locally-balanced proposals can be seen as a natural way to extend the latter to discrete spaces.
DOI: 10.34619/plei-itzg
title: CORPORART - PT/IT
title: specialized comparable corpora of Public Art

description: CORPORART – PT/IT is a bilingual comparable corpus of the Public Art domain. It comprises sub corpora for contemporary European Portuguese and Italian, from 2000 to 2018, covering text types and subdomains representative of the production of specialized texts in this highly interdisciplinary domain.
description: Barbero, Chiara; Amaro, Raquel (2019). CORPORART – PT/IT specialized comparable corpora of Public Art [Dataset]. CLUNL, Faculdade de Ciências Sociais e Humanas, Universidade Nova de Lisboa.
DOI: 10.6084/m9.figshare.14672193
title: sud2019-alcuse

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.5281/zenodo.4813093
title: Ornithoptera priamus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4813092
title: Ornithoptera priamus SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14672211
title: sud2020-op

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.6084/m9.figshare.14672232
title: ts2019

description: GWAS summary statistics from the Psychiatric Genomics Consortium (PGC)
DOI: 10.5066/p98pbr8o
title: OFR 2021-1008 MODEL ARCHIVE: Soil-Water-Balance model developed to simulate net infiltration and irrigation water use for the Mississippi Embayment Regional Aquifer System, 1915 to 2018

description: This model archive makes available the calibrated Soil-Water-Balance (SWB) model used to simulate potential recharge for the Mississippi Alluvial Aquifer for 1915 to 2018. The model was calibrated using monthly values of evapotranspiration and annual values of runoff and recharge for 19 drainage basins selected from within or nearby the Mississippi Alluvial Aquifer system. The calibrated SWB model and its use are described in the associated U.S. Geological Survey Open-File Report 2021-1008. The model was used to create output at two different scales: 1,609-meter and 1,000-meter grid cells. Also included are files used to generate a high-resolution (100-meter) subset of output for an area near Shellmound, Mississippi. The directory structure of the model archive contains all of the files needed to document and run the model for a short example time period. This archive *does not* include all daily weather data drivers needed to replicate the model output; those files consume tens of gigabytes of storage space and are available elsewhere on the Internet (sources and online links to these data are provided in the source information section of the metadata and the Related External Resouces section of this page). The directories in the archive are presented each as a separate .zip file and include a &quot;bin&quot; directory, a &quot;georef&quot; directory, a &quot;model directory, an &quot;output&quot; directory, and a &quot;source&quot; directory. There is a README file describing all the files and directories in the archive and information on how to run the model. Each primary folder also contains a README file describing the contents.
DOI: 10.5281/zenodo.4813080
title: biologger/htqpcr_ngs_data: release v1.0

description: Raw data and code for data analysis of the manuscript: "High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota."
DOI: 10.5281/zenodo.4813079
title: biologger/htqpcr_ngs_data: release v1.0

description: Raw data and code for data analysis of the manuscript: "High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota."
DOI: 10.5066/p9u484x5
title: OFR 2021-1008 MODEL OUTPUT: Soil-Water-Balance net infiltration and irrigation water use output datasets for the Mississippi Embayment Regional Aquifer System, 1915 to 2018

description: This data release includes four sets of gridded annual net infiltration (groundwater recharge) and irrigation water use data sets for the Mississippi Embayment Regional Aquifer System (MERAS).Also included are gridded water balance component data sets of precipitation, runoff, actual evapotranspiration, and soil-water storage for 2000 to 2018. The net infiltration, irrigation, runoff, actual evapotranspiration, and soil-water storage data sets are outputs from simulations done with the USGS Soil-Water-Balance (SWB) model (version 2; Westenbroek and others, 2018). The precipitation data was used as input for the SWB model application and is derived from DayMet version 3 (Thornton and others, 2018) and Livneh and others (2013). The SWB model application and associated input and output files are archived in a companion model archive data release.Further details about this application of the SWB model can be found in the related primary publication.The model archive data release and the primary publication can be accessed through links in the related external resources section below. The landing page for each child item contains metadata to further describe the contents of individual files.All gridded data have units of inches and are provided as netcdf files. References: Livneh, B., Rosenberg, E.A., Lin, C., Nijssen, B., Mishra, V., Andreadis, K.M., Maurer, E.P., and Lettenmaier, D.P., 2013, A long-term hydrologically based dataset of land surface fluxes and states for the conterminous United States: Update and extensions: Journal of Climate, v. 26, no. 23, p. 9384?9392. Thornton, P.E., Thornton, M.M., Mayer, B.W., Wei, Y., Devarakonda, R., Vose, R.S., and Cook, R.B., 2016, Daymet: Daily Surface Weather Data on a 1-km Grid for North America, Version 3, accessed August 16, 2018, at http://dx.doi.org/10.3334/ORNLDAAC/1328. Westenbroek, S.M., Engott, J.A., Kelson, V.A., and Hunt, R.J., 2018, SWB version 2.0?A Soil-Water-Balance code for estimating net infiltration and other water-budget components: U.S. Geological Survey Techniques and Methods, book 6, chap. A59, 118 p., https://doi.org/10.3133/tm6A59.
DOI: 10.6084/m9.figshare.14619267
title: Analysis files from Douglas et al. (2021)

description: Analysis files from:Douglas, H.B, Kundrata, R., Brunke, A.J., Escalona, H., Chapados, J.T., Eyres, J., Richter, R., Savard, K., Ślipiński, A., McKenna, D., and Dettman, J.R. 2021. Anchored phylogenomics, evolution and systematics of Elateridae: Are all bioluminescent Elateroidea derived click beetles? MDPI Biology. In press.<br>Alignments, partition files and taxon name key. <br>
DOI: 10.6084/m9.figshare.14619267.v1
title: Analysis files from Douglas et al. (2021)

description: Analysis files from:Douglas, H.B, Kundrata, R., Brunke, A.J., Escalona, H., Chapados, J.T., Eyres, J., Richter, R., Savard, K., Ślipiński, A., McKenna, D., and Dettman, J.R. 2021. Anchored phylogenomics, evolution and systematics of Elateridae: Are all bioluminescent Elateroidea derived click beetles? MDPI Biology. In press.<br>Alignments, partition files and taxon name key. <br>
DOI: 10.5281/zenodo.4744998
title: Dataset for the Manuscript: Surfactants Control Optical Trapping Near a Glass Wall

description: This repository includes a data set, which supports our manuscript that will be submitted to ACS Nano. We include the data set necessary to reproduce the results of the manuscript in the '<strong>RawData.zip</strong>' file. We provide a data manual, '<strong>Raw data manual.html</strong>', which explains the details of the data and visualizes it.
description: Funding from the European Research Council (ERC-2015-AdG-695206 Nanofactory)
DOI: 10.5281/zenodo.4813099
title: [Dataset] IS MINIMISING WASTE VOLUME FOR DRAWING BLOOD SAMPLES IN CRITICALLY ILL PATIENTS FEASIBLE?

description: Drawing blood samples through a central venous catheter is a customary practice in Intensive Care Units. It is recommended to discard a volume of waste blood to avoid interference in the results. Decreasing this volume could contribute to minimising iatrogenic anaemia in our patients.
DOI: 10.5281/zenodo.4813098
title: [Dataset] IS MINIMISING WASTE VOLUME FOR DRAWING BLOOD SAMPLES IN CRITICALLY ILL PATIENTS FEASIBLE?

description: Drawing blood samples through a central venous catheter is a customary practice in Intensive Care Units. It is recommended to discard a volume of waste blood to avoid interference in the results. Decreasing this volume could contribute to minimising iatrogenic anaemia in our patients.
DOI: 10.15129/bf545b98-568d-4c91-84da-cdf1e604a088
title: Code for: "A New Cost Function for Spatial Image Steganography Based on 2D-SSA and WMF"

description: The Matlab code for the paper. The codes are about image processing and they are encrypted with Matlab function "pcode *.m".
DOI: 10.6084/m9.figshare.14680884
title: Genotype of Samples for ABCB1 and CYP2E1.pdf

description: This data sheet is genotype profile for ABCB1 (rs1045642 and rs1128503) and CYP2E1 rs3813867 of samples from Jambi City, Indonesia<br>
DOI: 10.25345/c5xb9r
title: MassIVE MSV000087522 - GNPS_Synthetic Conjugated Bile Acid Mixtures_qtof
title: Positive and negative LC-MS/MS data collected for synthetic mixtures of conjugated bile acids made by combining CA, CDCA, DCA, HDCA, UDCA, aMCA, bMCA, or gMCA with 22 different amino acids using ethyl chloroformate, triethylamine, and NaHCO3 or NaOH.
DOI: 10.24384/qvav-pg61
title: Oxford Brookes news RSS feed
DOI: 10.25773/pq99-2592
title: Road accessibility from county seat under flooding: Hampton, Newport News, James City, Poquoson, Williamsburg, York, Accomack, Northampton, Alexandria, Fairfax, Gloucester, Mathews, Middlesex
DOI: 10.25773/hz0r-jx50
title:   Physical Vulnerability Index
DOI: 10.5281/zenodo.4736597
title: Labeled songs of domestic canary M1-2016-spring (Serinus canaria)

description: <strong>Labeled songs of domestic canary M1-2016-spring (Serinus canaria)</strong> <em>J. Giraudon*<sup>123</sup>, N. Trouvain*<sup>123</sup>, A. Cazala<sup>4</sup>, C. Del Negro<sup>4</sup>, X. Hinaut<sup>123</sup></em> <sup>1</sup> Inria Bordeaux Sud-Ouest, France <sup>2</sup> LaBRI, Bordeaux INP, CNRS, UMR 5800, France <sup>3</sup> Institut des Maladies Neurogégénératives, Université de Bordeaux, CNRS, UMR 5293, France <sup>4 </sup>Paris-Saclay University, UMR 9197 CNRS, Paris-Saclay Institute of Neuroscience, France <em>* these authors participated equally to this work.</em> <strong>General information</strong> This dataset contains ~3h of labeled songs (459 songs) of one male canary (called M1) recorded between May 24th and June 15th 2016. Songs were recorded in a sound-isolation chamber using a RODE M3 microphone, an external sound card for microphone amplification (M-Audio Fast Track Ultra 8R), and the software Sound Analysis Pro 2011 (SAP). SAP parameters were set with conservative thresholds (software threshold to 4-6) in order to record the initiation of canary's songs which can be low in volume. Songs were hand labelled by one human expert using Audacity. They were then checked and corrected by another human expert assisted by an automated program based on recurrent neural networks (see References). <strong>Dataset description</strong> Canary songs are labeled using 27 different identified syllable classes + 1 "call" class identifying simple off-song calls + 1 "TRASH" class for irrelevant sounds (very rare vocalizations or non-bird sounds) + 1 "SIL" class for silence between vocalizations. Songs are annotated at the phrase level: a phrase consists of a repetition of a single syllable type and each phrase type is assigned a label. Annotations are provided in CSV format in the "M1-2016-spring_annotations.zip" archive. There is one file per song, containing: a "wave" column indicating the song's audio filename; "start" and "end" columns indicating the temporal delimitation of the label from the begining of the song, in seconds; a "syll" column indicating the labels. Songs are provided in WAV format (44kHz sampling rate) in the "M1-2016-spring_audio.zip" archive. There is one file per song: audio filenames match corresponding annotation filenames. <strong>References</strong> This dataset was used in: N. Trouvain, X. Hinaut (2021) Canary Song Decoder: Transduction and Implicit Segmentation with ESNs and LTSMs. HAL preprint 〈hal-03203374〉
description: {"references": ["N. Trouvain, X. Hinaut (2021) Canary Song Decoder: Transduction and Implicit Segmentation with ESNs and LTSMs. HAL preprint \u27e8hal-03203374\u27e9"]}
DOI: 10.5517/ccdc.csd.cc25q0mk
title: CCDC 2017158: Experimental Crystal Structure Determination

description: Related Article: Mehdi Ghandi, Meysam Khodadadi, Alireza Abbasi|2021|J.Heterocycl.Chem.|58|478|doi:10.1002/jhet.4185
DOI: 10.25773/8evk-qf95
title: Areas Suitable for Living Shorelines: Ranked for Co-Benefits Provided
DOI: 10.5281/zenodo.4813348
title: Breast cancer risk factors and circulating anti-Müllerian hormone concentration in healthy premenopausal women: Supplementary Information and Tables

description: Supplementary Material and Tables to accompany the manuscript: "Breast cancer risk factors and circulating anti-Müllerian hormone concentration in healthy premenopausal women"
DOI: 10.5281/zenodo.4813347
title: Breast cancer risk factors and circulating anti-Müllerian hormone concentration in healthy premenopausal women: Supplementary Information and Tables

description: Supplementary Material and Tables to accompany the manuscript: "Breast cancer risk factors and circulating anti-Müllerian hormone concentration in healthy premenopausal women"
DOI: 10.15468/tjvm4v
title: Redescriptions of ten chigger mite species (Acariformes: Trombiculidae) from Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Antonovskaia, Anastasia A., Stekolnikov, Alexandr A. (2021): Redescriptions of ten chigger mite species (Acariformes: Trombiculidae) from Vietnam. Zootaxa 4969 (1): 1-53, DOI: https://doi.org/10.11646/zootaxa.4969.1.1
DOI: 10.25345/c5sn7v
title: MassIVE MSV000087523 - GNPS_Synthetic Conjugated Bile Acid Mixtures_qexactive
title: Positive LC-MS/MS data collected for synthetic mixtures of conjugated bile acids made by combining CA, CDCA, DCA, HDCA, UDCA, aMCA, bMCA, or gMCA with 22 different amino acids using ethyl chloroformate, triethylamine, and NaHCO3 or NaOH.
DOI: 10.5281/zenodo.4813432
title: Geometric optimisation of wave energy conversion devices: A survey (data)

description: Dataset for AE 2021.
DOI: 10.6084/m9.figshare.13029039.v3
title: Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i> <sub>CTX-M-14b</sub> in Europe

description: Global dissemination of ciprofloxacin-resistant <i>Salmonella</i> Kentucky has been observed over the past decades. In recent years, there have been reports of extended-spectrum β-lactamase (ESBL) producing <i>S</i>. Kentucky. Routine surveillance at the European Centre for Disease Prevention and Control (ECDC) detected cases with a ciprofloxacin-resistant <i>S</i>. Kentucky with the ESBL-gene <i>bla</i> <sub>CTX-M-14b</sub>. Ensuing research identified 78 cases in 2013–2018 in eight European countries. Compared to other <i>S</i>. Kentucky and non-typhoidal <i>Salmonella</i> infections, reported to the European Surveillance System, these cases were more likely to be elderly and to present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin and spread of this clone. We dated the origin of the <i>bla</i> <sub>CTX-M-14b</sub> clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ travel history. Next to multiple introductions of the clone to Europe from Egypt, our analysis suggests that in some parts of Europe the clone might have formed a stable population, from which further spread has occurred. Comparative genomics indicated that the <i>bla</i> <sub>CTX-M-14b</sub> gene is present on the bacterial chromosome, within the type VI secretion system region. The <i>bla</i> <sub>CTX-M-14b</sub> gene is integrated downstream of the <i>hcp1</i> gene, on a 2854 bp plasmid fragment containing also IS<i>Ecp1</i>. This is the first report of a chromosomally integrated CTX-M gene in <i>Salmonella</i> spp. in Europe, previous studies having identified similar genes only on plasmids.
DOI: 10.5281/zenodo.4813431
title: Geometric optimisation of wave energy conversion devices: A survey (data)

description: Dataset for AE 2021.
DOI: 10.25345/c5nv69
title: MassIVE MSV000087524 - GNPS - Hela Single Cell QC kelly lab
title: 6 2ng files and 6 0.2ng files Samples are QC Hela standard (https://www.thermofisher.com/order/catalog/product/88328#/88328) LC system: Pump + Autosampler:Thermo Scientific Dionex UltiMate 3000 Series Column i.d. 30 um with different packing material: J3 = Jupiter C18, 3.0 um, 300 angstrom, 50 cm long K13 = Kinetex C18,1.3 um, 100 angstrom, 9cm long W17 = Water BEH C18, 1.7 um, 130 angstrom, 16 cm long 60 min separation gradient (8%B to 25%B) 20 min flushing from 25%B to 45%B 5 min washing from 45% to 90%B 25 min regeneration at 2% flowrate is about 30-40 nL/m Mobile A = Water (Honeywell) + 0.1 % Formic Acid (Thermo) Mobile B = Acetonitrile (Honeywell) + 0.1% Formic Acid (Thermo) The file names contain the sample size and lc packing material.
DOI: 10.15468/jny27e
title: New findings on the taxonomy of the genus Coeleumenes van der Vecht (Hymenoptera: Vespidae: Eumeninae) from Vietnam, with description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mai, Thai Van, Nguyen, Lien Thi Phuong (2021): New findings on the taxonomy of the genus Coeleumenes van der Vecht (Hymenoptera: Vespidae: Eumeninae) from Vietnam, with description of a new species. Zootaxa 4969 (1): 191-196, DOI: https://doi.org/10.11646/zootaxa.4969.1.12
DOI: 10.6084/m9.figshare.14680167
title: SAshikawa-AJPHCP-Supplemental Table 1

description: <b>Supplemental Table 1. </b>Results of Two-Way Factorial ANOVA for the Effects of BpV(pic) Treatment and Restraint Stress in DS/Obese Rats of the Four Experimental Groups at 13 Weeks of Age<br>
DOI: 10.6084/m9.figshare.14680167.v2
title: SAshikawa-AJPHCP-Supplemental Table 1

description: <b>Supplemental Table 1. </b>Results of Two-Way Factorial ANOVA for the Effects of BpV(pic) Treatment and Restraint Stress in DS/Obese Rats of the Four Experimental Groups at 13 Weeks of Age<br>
DOI: 10.6084/m9.figshare.14680167.v1
title: SAshikawa-AJPHCP-Supplemental Table 1

description: <b>Supplemental Table 1. </b>Results of Two-Way Factorial ANOVA for the Effects of BpV(pic) Treatment and Restraint Stress in DS/Obese Rats of the Four Experimental Groups at 13 Weeks of Age<br>
DOI: 10.15468/bgqa4q
title: Studies on Raspy Crickets: A new Andean Hyperbaenini genus (Orthoptera Gryllacrididae: Hyperbaeninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cadena-Castañeda, Oscar J., Araujo-Peña, Ío, Rubiano-Guzman, Milton, Díaz, Carlos Julio Arango (2021): Studies on Raspy Crickets: A new Andean Hyperbaenini genus (Orthoptera Gryllacrididae: Hyperbaeninae). Zootaxa 4969 (1): 183-190, DOI: https://doi.org/10.11646/zootaxa.4969.1.11
DOI: 10.6084/m9.figshare.14681013
title: Table 1. Baseline characteristics of patients included in the study

description: Baseline characteristics of patients included in the study
DOI: 10.6084/m9.figshare.14681013.v1
title: Table 1. Baseline characteristics of patients included in the study

description: Baseline characteristics of patients included in the study
DOI: 10.6084/m9.figshare.14681028
title: Table 2. Ustekinumab dosing, interval, levels, duration of therapy, and complications

description: Ustekinumab dosing, interval, levels, duration of therapy, and complications
DOI: 10.6084/m9.figshare.14681028.v1
title: Table 2. Ustekinumab dosing, interval, levels, duration of therapy, and complications

description: Ustekinumab dosing, interval, levels, duration of therapy, and complications