cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/pr00011936
title: A 12-week, Prospective, Open Label, Single Cohort Study to Evaluate the Real-world Effectiveness of Fluticasone Furoate/Umeclidinium Bromide/Vilanterol in a Single Inhaler (Trelegy Ellipta) in Symptomatic Chronic Obstructive Pulmonary Disease (COPD) Patients

description: The primary objective of this study is to evaluate the effectiveness of TRELEGY ELLIPTA on health status in participants with symptomatic COPD. The secondary objective is to evaluate the effectiveness of TRELEGY ELLIPTA on dyspnea and lung function in participants with symptomatic COPD. TRELEGY and ELLIPTA are trademarks of the GlaxoSmithKline group of companies.
DOI: 10.5281/zenodo.17569654
title: Fluorescence Images and Masks for Segmenetation using DeLTA

description: This datasets contains fluorescence images in a mother machine (folder training_data_seg_mix/img), manually annotated segmentation masks (folder training_data_seg_mix/seg), and a trained DeLTA Keras model. All images are from GFP-tagged E. coli taken using a Nikon PLAN APO lambdaD 40x/0.95 N.A. objective, 450nm excitation wavelength, 100ms exposure, and a Teledyne Kinetix sCMOS camera.
DOI: 10.5281/zenodo.17569655
title: Fluorescence Images and Masks for Segmenetation using DeLTA

description: This datasets contains fluorescence images in a mother machine (folder training_data_seg_mix/img), manually annotated segmentation masks (folder training_data_seg_mix/seg), and a trained DeLTA Keras model. All images are from GFP-tagged E. coli taken using a Nikon PLAN APO lambdaD 40x/0.95 N.A. objective, 450nm excitation wavelength, 100ms exposure, and a Teledyne Kinetix sCMOS camera.
DOI: 10.15468/dl.4nx23s
title: Occurrence Download

description: A dataset containing 22073 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydrilla verticillata"
 ]
}

 The dataset includes 22073 records from 364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024680-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00011935
title: A Phase III, Randomized, Observer-blind, Placebo Controlled, Multicenter Clinical Trial to Assess Herpes Zoster Recurrence and the Reactogenicity, Safety and Immunogenicity of GSK Biologicals' Herpes Zoster Vaccine (HZ/su) When Administered Intramuscularly on a 0 and 2 Month Schedule to Adults ≥50 Years of Age With a Prior Episode of Herpes Zoster

description: The purpose of this study was to assess the safety and immunogenicity of GSK Biologicals' HZ/su vaccine when given on a two-dose schedule to adults aged 50 years and above who had a previous episode of Herpes Zoster (HZ).
DOI: 10.11588/duerer.online.6911c158a4da7
title: Maison d'Albrecht Durer à Nuremberg, 184174
DOI: 10.5281/zenodo.17568755
title: Escherichia coli strain BLRI_002

description: This dataset contains whole genome sequencing data of Escherichia coli isolates collected from poultry feces in Dhaka city of Bangladesh during 2024. The sequencing was performed using the Illumina NextSeq2000 platform, generating paired-end reads (2 × 150 bp). Raw reads were trimmed and assembled using Trimmomatic v0.39 and Unicycler v0.4.8.

The data support a study on antimicrobial resistance genes and mobile genetic elements associated with colistin resistance.
DOI: 10.5281/zenodo.17568756
title: Escherichia coli strain BLRI_002

description: This dataset contains whole genome sequencing data of Escherichia coli isolates collected from poultry feces in Dhaka city of Bangladesh during 2024. The sequencing was performed using the Illumina NextSeq2000 platform, generating paired-end reads (2 × 150 bp). Raw reads were trimmed and assembled using Trimmomatic v0.39 and Unicycler v0.4.8.

The data support a study on antimicrobial resistance genes and mobile genetic elements associated with colistin resistance.
DOI: 10.5281/zenodo.17570060
title: Reconstructed proton charge structure: Insights from Patterson function analysis

description: We present an empirical and graphical method to reconstruct the proton’s internal charge structure using Patterson function analysis. The resulting model is non-negative and compact, with a radius of half-maximum Patterson charge density of 0.09 fm—identical to the experimental value. The radius of half-maximum charge density of the reconstructed proton structure is 0.051 fm, which lies within the upper bound for non-negative radial Patterson charge density. This study introduces a novel and independent method for determining the proton’s charge. The calculated value of 0.854 closely approximates the known proton charge, offering a fresh perspective on nucleon structure and complementing existing theoretical models.
DOI: 10.5281/zenodo.16849344
title: Reconstructed proton charge structure: Insights from Patterson function analysis

description: We present an empirical and graphical method to reconstruct the proton’s internal charge structure using Patterson function analysis. The resulting model is non-negative and compact, with a radius of half-maximum Patterson charge density of 0.09 fm—identical to the experimental value. The radius of half-maximum charge density of the reconstructed proton structure is 0.051 fm, which lies within the upper bound for non-negative radial Patterson charge density. This study introduces a novel and independent method for determining the proton’s charge. The calculated value of 0.854 closely approximates the known proton charge, offering a fresh perspective on nucleon structure and complementing existing theoretical models.
DOI: 10.5281/zenodo.17204691
title: Towards Better Linux Kernel Bug Localization: Leveraging Contrastive Reasoning and Hierarchical Context Analysis

description: This repository contains the implementation of CoHiKer and the dataset used in our experiments for fault localization in the Linux kernel using large language models (LLMs). We also adopt CoHiKER on non-kernel benchmark SWEBENCH. And experimental results are at README.md.
DOI: 10.5281/zenodo.17569818
title: Towards Better Linux Kernel Bug Localization: Leveraging Contrastive Reasoning and Hierarchical Context Analysis

description: This repository contains the implementation of CoHiKer and the dataset used in our experiments for fault localization in the Linux kernel using large language models (LLMs). We also adopt CoHiKER on non-kernel benchmark SWEBENCH. And experimental results are at README.md.
DOI: 10.15468/dl.tsm6z7
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geocoris lineolus cognatus"
 ]
}

 The dataset includes 54 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024683-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17533978
title: Supplementary data for "Apis mellifera (Honeybee) as a Local Source of Chitosan to Enhance Mechanical Properties of moulded pulp egg boxes"

description: Supplementary research data for manuscript "Apis mellifera (Honeybee) as a Local Source of Chitosan to Enhance Mechanical Properties of moulded pulp egg boxes"
DOI: 10.5281/zenodo.17559632
title: Supplementary data for "Apis mellifera (Honeybee) as a Local Source of Chitosan to Enhance Mechanical Properties of moulded pulp egg boxes"

description: Supplementary research data for manuscript "Apis mellifera (Honeybee) as a Local Source of Chitosan to Enhance Mechanical Properties of moulded pulp egg boxes"
DOI: 10.15468/dl.gcvhns
title: Occurrence Download

description: A dataset containing 466734 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ECNASAP - East Coast North America Strategic Assessment"
 ]
}

 The dataset includes 466734 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024679-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30043714.v1
title: Dataset and R code for: Banded mongooses discriminate relatedness and MHC diversity in unfamiliar conspecifics

description: This repository includes R code and data necessary to reproduce manuscript results and figures. The code has been written by Jamie Winternitz (jcwinternitz-at-gmail.com) and Hazel Nichols (H.J.Nichols-at-Swansea.ac.uk).The R code '<b>summary_of_datasets.R</b>' summarizes the structure of the different datasets used for the analyses. It requires the following data:'Full_scent_presentation_dataset.csv''sample_sets.csv'The R code '<b>r_code.R</b>' runs the analyses and produces the tables and figures in the manuscript and in the Supplementary Materials. It requires the following data:'Full_scent_presentation_dataset.csv'For explanation of variables for the respective datasets, please see the data dictionaries 'variables_defined_Full_scent_presentation_dataset.csv' and 'variables_defined_sample_sets.csv'.For questions or reproduction of results, please refer to the manuscript or contact the authors.
DOI: 10.15468/dl.ap2adf
title: Occurrence Download

description: A dataset containing 596291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tarenaya hassleriana, Armoracia rusticana, Persicaria pensylvanica, Amaranthus tenuifolius, Anagallis arvensis, Heliotropium ellipticum, Distimake cissoides, Distimake dissectus, Distimake quinquefolius, Camonea umbellata, Atropa belladonna, Brugmansia candida, Cymbalaria muralis, Andrographis paniculata, Asystasia gangetica micrantha, Elsholtzia communis, Ocimum gratissimum suave, Lamium purpureum hybridum, Taraxacum rhodopodum, Coreopsis basalis, Conoclinium coelestinum, Coriandrum sativum, Solanum pseudocapsicum diflorum, Amaranthus retroflexus delilei, Symphyotrichum squamatum, Symphyotrichum expansum, Pontederia plantaginea, Narcissus tazetta chinensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 596291 records from 2491 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024661-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fq9e3
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Kiaeria riparia)",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025526-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31242525
title: mRNA mediated expression of novel fusion phage tail protein with antimicrobial peptides inside macrophages for targeted clearance of intracellular <i>Mycobacterium tuberculosis</i>

description: Current anti-tuberculosis treatments primarily target extracellular <i>Mycobacterium tuberculosis</i> (<i>Mtb</i>), but exhibit limited efficacy against intracellular <i>Mtb</i>, leading to incomplete clearance of pathogens and an increased risk of recurrence. Antimicrobial peptides (AMPs) possess broad-spectrum antimicrobial activity and low potential for resistance development. Here we developed an <i>in vitro</i> mRNA expression platform which not only facilitates intracellular AMPs expression within macrophages, but also significantly enhances their bactericidal activity against <i>Mtb</i> post-infection. Notably, the combination of AMPs trimers demonstrated superior anti-<i>Mtb</i> activity compared to individual AMPs or other combinations. Furthermore, fusion of this AMP complex with either the minor tail protein Gp6 or lysin Gp10 from <i>Mycobacterium phage</i> L5 substantially improved macrophage-specific targeting and intracellular <i>Mtb</i> elimination. Thus, our current study provides novel insights and innovative strategies for the treatment of tuberculosis or other intracellular bacterial pathogens.
DOI: 10.6084/m9.figshare.31242525.v2
title: mRNA mediated expression of novel fusion phage tail protein with antimicrobial peptides inside macrophages for targeted clearance of intracellular <i>Mycobacterium tuberculosis</i>

description: Current anti-tuberculosis treatments primarily target extracellular <i>Mycobacterium tuberculosis</i> (<i>Mtb</i>), but exhibit limited efficacy against intracellular <i>Mtb</i>, leading to incomplete clearance of pathogens and an increased risk of recurrence. Antimicrobial peptides (AMPs) possess broad-spectrum antimicrobial activity and low potential for resistance development. Here we developed an <i>in vitro</i> mRNA expression platform which not only facilitates intracellular AMPs expression within macrophages, but also significantly enhances their bactericidal activity against <i>Mtb</i> post-infection. Notably, the combination of AMPs trimers demonstrated superior anti-<i>Mtb</i> activity compared to individual AMPs or other combinations. Furthermore, fusion of this AMP complex with either the minor tail protein Gp6 or lysin Gp10 from <i>Mycobacterium phage</i> L5 substantially improved macrophage-specific targeting and intracellular <i>Mtb</i> elimination. Thus, our current study provides novel insights and innovative strategies for the treatment of tuberculosis or other intracellular bacterial pathogens.
DOI: 10.6084/m9.figshare.31160752
title: Assessment of three antiviral compounds against Borealpox virus infection in a mouse model

description: Borealpox virus (BRPV) is a zoonotic orthopoxvirus which was first documented in Alaska in 2015. Although most human infections are mild, a recent fatal case in an immunocompromised individual highlights the importance of studying this emerging pathogen. To date, less than 10 human cases of BRPV infection have been confirmed which limit the availability of clinical data on the effectiveness of antiviral therapy. Here, we examined the effectiveness of cidofovir, brincidofovir, and tecovirimat in cell culture and found all three were potent inhibitors of BRPV. In order to further study these modalities <i>in vivo</i>, we assessed immunocompetent and immunodeficient mice as disease models for BRPV. CAST/EiJ mice proved to be a suitable immunocompetent model for BRPV infection with high viral titres in several organs and route-dependent lethality. BRPV infection in immunodeficient mice, including STAT1<sup>−/−</sup>, <i>scid</i>, and NSG strains, was uniformly lethal and characterized by high viral titres as well as profuse fluid retention in the peritoneal cavity. Using CAST/EiJ mice, we then evaluated cidofovir, brincidofovir, and tecovirimat therapies. Post-exposure treatment resulted in significant reductions in viral titres and an improved clinical course of infection. Our results demonstrate the utility of mouse models to study the pathogenicity of BRPV and support the use of these antivirals to treat human infections.
DOI: 10.6084/m9.figshare.31160752.v1
title: Assessment of three antiviral compounds against Borealpox virus infection in a mouse model

description: Borealpox virus (BRPV) is a zoonotic orthopoxvirus which was first documented in Alaska in 2015. Although most human infections are mild, a recent fatal case in an immunocompromised individual highlights the importance of studying this emerging pathogen. To date, less than 10 human cases of BRPV infection have been confirmed which limit the availability of clinical data on the effectiveness of antiviral therapy. Here, we examined the effectiveness of cidofovir, brincidofovir, and tecovirimat in cell culture and found all three were potent inhibitors of BRPV. In order to further study these modalities <i>in vivo</i>, we assessed immunocompetent and immunodeficient mice as disease models for BRPV. CAST/EiJ mice proved to be a suitable immunocompetent model for BRPV infection with high viral titres in several organs and route-dependent lethality. BRPV infection in immunodeficient mice, including STAT1<sup>−/−</sup>, <i>scid</i>, and NSG strains, was uniformly lethal and characterized by high viral titres as well as profuse fluid retention in the peritoneal cavity. Using CAST/EiJ mice, we then evaluated cidofovir, brincidofovir, and tecovirimat therapies. Post-exposure treatment resulted in significant reductions in viral titres and an improved clinical course of infection. Our results demonstrate the utility of mouse models to study the pathogenicity of BRPV and support the use of these antivirals to treat human infections.
DOI: 10.6084/m9.figshare.31242525.v1
title: mRNA Mediated Expression of Novel Fusion Phage Tail Protein with Antimicrobial Peptides inside Macrophages for Targeted Clearance of Intracellular <i>Mycobacterium tuberculosis</i>

description: Current anti-tuberculosis treatments primarily target extracellular <i>Mycobacterium tuberculosis</i> (<i>Mtb</i>), but exhibit limited efficacy against intracellular <i>Mtb</i>, leading to incomplete clearance of pathogens and an increased risk of recurrence. Antimicrobial peptides (AMPs) possess broad-spectrum antimicrobial activity and low potential for resistance development. Here we developed an <i>in vitro</i> mRNA expression platform which not only facilitates intracellular AMPs expression within macrophages, but also significantly enhances their bactericidal activity against <i>Mtb</i> post-infection. Notably, the combination of AMPs trimers demonstrated superior anti-<i>Mtb</i> activity compared to individual AMPs or other combinations. Furthermore, fusion of this AMP complex with either the minor tail protein Gp6 or lysin Gp10 from <i>Mycobacterium phage</i> L5 substantially improved macrophage-specific targeting and intracellular <i>Mtb</i> elimination. Thus, our current study provides novel insights and innovative strategies for the treatment of tuberculosis or other intracellular bacterial pathogens.
DOI: 10.57761/bkfk-7k26
title: partner-mpib-de

description: This is a dataset for partner-mpib-de, current API params: {'dataset_id': 'partner-mpib-de', 'is_save_to_storage': True, 'is_force_uploading_to_redivis': False, 'slack_notification_mode': 'Full', 'orgs': "partner-mpib-de (users): Org (['TbyA1NTvwHUmezi1fezs']), Date range: No date limit"}
DOI: 10.3535/7y2-gfs-hez
title: Peneroplis Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ym6-31y-q2b
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/44p-86m-5js
title: Cycloclypeus carpenteri Brady, 1881

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/578-dfd-1p3
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/88s-l7k-ssy
title: †Discocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fgd-nwj-aqn
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kk9-pg2-1db
title: †Fusulinidae Möller, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fcj-9f9-8a8
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ehz-3wd-05a
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zsh-d25-lqh
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3lt-blw-cn4
title: †Fusulinidae Möller, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/932-m3m-ck5
title: †Lepidorbitoides campaniensis van Gorsel, 1973

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3kw-fzy-lx6
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8p1-b4n-bm4
title: †Orbitoides d'Orbigny, in Lyell, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pcp-f0d-zla
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/de5-t28-h0w
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kcn-f3x-3d1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/92z-4vn-let
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h8w-b92-6xm
title: †Orbitoides d'Orbigny, in Lyell, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1z3-8gs-jhj
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vfx-nb3-0yq
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5jr-x4a-gbc
title: Cellaria sinuosa (Hassall, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6tk-7sp-xab
title: Belemnites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rd4-46m-qen
title: †Fusulinidae Möller, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3k5-raw-qg7
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y76-0qg-x5y
title: †Fusulinidae Möller, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ejxary
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arundo donax",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020385-250811113504898/datasets/export for details.
DOI: 10.3535/8ld-5a6-9qh
title: †Lepidocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f12-cb7-s2q
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/709-fwg-60w
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y03-ckj-2m1
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sa5-w14-ww8
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7bl-jsx-6ny
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.