cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0q81bnr
title: CIL:46042, Homo sapiens. In Cell Image Library

description: Plate 26600 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
DOI: 10.6075/j0zs2v22
title: CIL:46054, Homo sapiens. In Cell Image Library

description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
description: Plate 26642 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
DOI: 10.6075/j0j67fjp
title: CIL:46059, Homo sapiens. In Cell Image Library

description: Plate 26664 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
DOI: 10.6075/j0cc0z7c
title: CIL:46051, Homo sapiens. In Cell Image Library

description: Plate 26626 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
DOI: 10.6075/j0z60mxr
title: CIL:41914, Quercus. In Cell Image Library

description: Brightfield image of Quercus (oak) leaf with tufted trichomes (fine outgrowths or appendages on plants and certain protists). Honorable Mention, 2009 Olympus 
 BioScapes Digital Imaging Competition©.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: bright-field microscopy
Parameter imaged: absorption of illumination
Source of contrast: differences in intrinsic optical density
Visualization methods: visualization of contiguous regions
DOI: 10.6075/j01r6qnt
title: CIL:42167, Mus musculus. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: mammary tumor organoids
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: contrast adjustment
description: Representative time-lapse movie of a mouse mammary tumor fragment in collagen I. CIL 42166 is a related movie of a mammary tumor fragment in Matrigel. Images collected every 20 min. This movie is part of a group of movies that include CIL 42151-42168.
DOI: 10.6075/j02r3rtn
title: CIL:42159, Mus musculus, epithelial cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: mammary organoid
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: tdTomatoFP; EGFP
Processing history: contrast adjusted; confocal stack
description: Time-lapse movie showing that disseminated P-cadherin null cells persist in the extracellular matrix and can proliferate The cells are expressing td tomato as a membrane marker and eEGFP-actin using a keratin-14 promoter. Images were collected every 20 minutes. The image size is 350 x 350 microns. This movie is part of a group of movies that include CIL 42151-42168.
DOI: 10.6075/j0z0389m
title: CIL:42161, Homo sapiens, epithelial cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: multi-cellular tumor fragment
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: contrast adjustment
description: Representative time-lapse movie of a human mammary tumor fragment in collagen. CIL 42160 is a movie of a normal mammary fragment in Matrigel. Images collected every 20 minutes and bar is 50 microns. This movie is part of a group of movies that include CIL 42151-42168.
DOI: 10.6075/j0t72hkw
title: CIL:42160, Homo sapiens, epithelial cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: multi-cellular tumor fragment
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: contrast adjustment
description: Representative time-lapse movie of a human mammary tumor fragment in Matrigel. CIL 42161 is a related movie that shows a human mammary tumor fragment in collagen. Images collected every 20 minutes and bar is 50 microns. This movie is part of a group of movies that include CIL 42151-42168.
DOI: 10.24385/lincoln.30499718
title: UK classical guitar makers survey frequency data

description: Frequency data from of a national survey of UK classical guitar makers (2018), focusing on their education and experience. 101 people were invited to participate, 61 people responded.
DOI: 10.6075/j0n29wbp
title: CIL:45764, Homo sapiens. In Cell Image Library

description: Gustafsdottir et al. (doi:10.1371/journal.pone.0080999) have developed a multiplex cytological profiling assay that "paints the cell" with as many fluorescent markers as possible without compromising our ability to extract rich, quantitative profiles in high throughput. The assay detects seven major cellular components. In a pilot screen of bioactive compounds, the assay detected a range of cellular phenotypes and it clustered compounds with similar annotated protein targets or chemical structure based on cytological profiles. The results demonstrate that the assay captures subtle patterns in the combination of morphological labels, thereby detecting the effects of chemical compounds even though their targets are not stained directly. This image-based assay provides an unbiased approach to characterize compound- and disease-associated cell states to support future probe discovery.

Using the cell-painting assay, the Broad Institute has assembled a reference dataset of profiles for U2OS osteosarcoma cells treated with ~30,000 compounds. The compound collection includes DOS-derived compounds (20,000), as well as chemically diverse MLI compounds with biologically diverse performance identified through analysis of PubChem (10,000), and known bioactive compounds to serve as landmarks (2,500). The DOS compounds consist of structurally diverse and stereochemically rich compounds with structures distinct from the current MLSMR. The compound collection also includes 267 distinct compounds nominated by MLPCN Centers from projects for which the Centers would like to identify new chemical series with similar activities.

The experiment consists of 413 microtiter plates. Each plate has 384 wells. Each well has 9 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale 16-bit TIFF image file.
description: Plate 20630 - Phenotypic profiling attempts to summarize multiparametric, feature-based analysis of cellular phenotypes of each sample so that similarities between profiles reflect similarities between samples. This image set provides a basis for testing image-based profiling methods wrt. to their ability to distinguish the effects of small molecules.
 
Images
The images are of U2OS cells treated with each of 1600 known bioactive compounds and labeled with six labels that characterize seven organelles (the .cell-painting. assay).
 
This pilot experiment consists of 20 plates. Each plate has 384 wells and each well has 9 fields of view for a total of 69,120 fields of view. Each field was imaged in five channels (detection wavelengths), and each channel is stored as a separate, grayscale image file, so there are 345,600 image files in 16-bit TIFF format.
DOI: 10.5281/zenodo.17436369
title: Dataset for article: "Modelling the Relative Importance of Geological Controls on the Response to Storms in Coastal Barriers"
DOI: 10.5281/zenodo.17436370
title: Dataset for article: "Modelling the Relative Importance of Geological Controls on the Response to Storms in Coastal Barriers"
DOI: 10.15468/dl.afj8da
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Catalogue of Life"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009706-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30500067.v1
title: Approximation model of geometric factors for real-time assessment of on-site electrical resistivity of concrete

description: The measurement of electrical resistivity is widely used in civil engineering for structural inspection and material characterisation. Measuring devices employ electrodes to apply current and measure potential differences. The resistivity of concrete structures is determined from the applied current, measured voltage, and a geometric factor influenced by the structure’s geometry, electrodes spacing and positioning, and the presence of rebars. Several methods exist to determine this factor, including analytical approaches, finite element modelling, and experimental procedures. However, the latter two approaches are often time-consuming, and in practice—particularly during on-site inspections—a rapid evaluation of the geometric factor is required to adapt the measurement strategy in real time. This study introduces a fast approximation model for computing the geometric factor in four-probe devices using the Wenner array. The model is based on a neural network trained on a database generated by finite element simulations. It covers cylinders and prisms of various sizes, with and without rebars, and generalises results from finite-size slabs to large-scale structures. The model’s predictions were validated against published data. Furthermore, a graphical user interface (GUI) application has been developed to enable rapid, real-time evaluation of geometric factors, supporting researchers and inspectors in non-destructive testing (NDT).
DOI: 10.5281/zenodo.17444065
title: Conjunto de notas de leitura de processos relativos à ação de construção de "Construcción del Parque del Servicio Provincial de Prevención y Extinción de Incendios (SEPEI) de Cáceres [1985-1987]"

description: Conjunto de notas de leitura de processos relativos à ação de construção de "Construcción del Parque del Servicio Provincial de Prevención y Extinción de Incendios (SEPEI) de Cáceres [1985-1987]" existentes no Archivo de la Diputación Provincial de Cáceres e no Archivo Administrativo Municipal de Cáceres, em Cáceres.



Registos efetuados em março de 2024 no âmbito do projeto de investigação ReARQ.IB – Built Environment Knowledge for Resilient, Sustainable Communities: Understanding Everyday Modern Architecture and Urban Design in the Iberian Peninsula (1939-1985) (ERC GA949686) e publicado online em https://arquitecturaaqui.eu/pt/atividades/acoes/31492/construccion-del-parque-del-servicio-provincial-de-prevencion-y-extincion-de-incendios-sepei-de-caceres. 




Dados exportados da plataforma Arquitectura Aqui (https://arquitecturaaqui.eu), repositório do referido projeto, em outubro de 2025.
DOI: 10.5281/zenodo.17444066
title: Conjunto de notas de leitura de processos relativos à ação de construção de "Construcción del Parque del Servicio Provincial de Prevención y Extinción de Incendios (SEPEI) de Cáceres [1985-1987]"

description: Conjunto de notas de leitura de processos relativos à ação de construção de "Construcción del Parque del Servicio Provincial de Prevención y Extinción de Incendios (SEPEI) de Cáceres [1985-1987]" existentes no Archivo de la Diputación Provincial de Cáceres e no Archivo Administrativo Municipal de Cáceres, em Cáceres.



Registos efetuados em março de 2024 no âmbito do projeto de investigação ReARQ.IB – Built Environment Knowledge for Resilient, Sustainable Communities: Understanding Everyday Modern Architecture and Urban Design in the Iberian Peninsula (1939-1985) (ERC GA949686) e publicado online em https://arquitecturaaqui.eu/pt/atividades/acoes/31492/construccion-del-parque-del-servicio-provincial-de-prevencion-y-extincion-de-incendios-sepei-de-caceres. 




Dados exportados da plataforma Arquitectura Aqui (https://arquitecturaaqui.eu), repositório do referido projeto, em outubro de 2025.
DOI: 10.18419/darus-5184
title: Code for training and using the soot (instance) segmentation models
title: Instance segmentation model to extract soot filaments from PIV measurements in RQL-type combustor

description: This dataset contains the necessary code for using our soot (instance) segmentation model used for segmenting soot filaments from PIV (Mie scattering) images. In the corresponding paper, an ablation study is conducted to delineate the effects of domain randomisation parameters of synthetically generated training data on the segmentation accuracy. The best model is used to extract high-level statistics from soot filaments in an RQL-type model combustor to enhance the fundamental understanding soot formation, transport and oxidation. B. Jose, K. P. Geigle, F. Hampp, Domain-Randomised Instance-Segmentation Benchmark for Soot in PIV Images, submitted to Machine Learning: Science and Technology (2025)
description: Python, 3.8.10
description: Updated Readme, added training scripts