cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6tprbw
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Indonesia",
 "GadmGid is IDN.31_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Nymphalidae"
 ]
}

 The dataset includes 374 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044592-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4xks3
title: Occurrence Download

description: A dataset containing 990242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Melanogrammus aeglefinus"
 ]
}

 The dataset includes 990242 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044530-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pwa55
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prosphaerosyllis xarifae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044594-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/c290-1233
title: Partial pressure of carbon dioxide, water temperature, salinity and other variables collected from surface underway observations during the FerryBox ship Magnolia Seaways ships of opportunity (SOOP) cruises in the North Sea and North Atlantic Ocean in 2025 (NCEI Accession 0310377)

description: This dataset contains partial pressure of carbon dioxide, water temperature, salinity and other variables collected from surface underway observations during the FerryBox ship Magnolia Seaways ships of opportunity (SOOP) cruises in the North Sea and North Atlantic Ocean from 2025-01-29 to 2025-08-14.
DOI: 10.15468/dl.p88mjx
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bubalus quarlesi",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044595-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ze8t7h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((98.02800000000001 2.914175, 97.95764699999999 2.908606, 97.889028 2.892036, 97.823835 2.864874, 97.76367399999999 2.82779, 97.710027 2.781696, 97.664216 2.72773, 97.62736700000001 2.667221, 97.600388 2.60166, 97.583941 2.532661, 97.57843 2.461924, 97.58398800000001 2.39119, 97.600477 2.322202, 97.62748999999999 2.256657, 97.66436 2.196169, 97.710179 2.142226, 97.763818 2.096156, 97.82395699999999 2.059092, 97.889117 2.031947, 97.957694 2.015388, 98.02800000000001 2.009822, 98.09830599999999 2.015388, 98.166883 2.031947, 98.232043 2.059092, 98.292182 2.096156, 98.345821 2.142226, 98.39164 2.196169, 98.42851 2.256657, 98.455523 2.322202, 98.47201200000001 2.39119, 98.47757 2.461924, 98.472059 2.532661, 98.455612 2.60166, 98.428633 2.667221, 98.391784 2.72773, 98.345973 2.781696, 98.292326 2.82779, 98.23216499999999 2.864874, 98.166972 2.892036, 98.098353 2.908606, 98.02800000000001 2.914175))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044593-251120083545085/datasets/export for details.
DOI: 10.15468/dl.e4uamj
title: Occurrence Download

description: A dataset containing 1615 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Happywhale - Leopard seal in Southern Ocean"
 ]
}

 The dataset includes 1615 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044596-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14473/csda/xz74z0
title: COVID-19 Narratives in Czech Alternative Media: An Analysis of User Comments

description: Projekt se zaměřuje na analýzu uživatelských komentářů pod články o pandemii COVID-19 na serveru Parlamentní listy. Cílem je identifikovat a analyzovat dominantní narativy, témata a sentimenty vyjadřované diskutujícími. Data jsou sbírána pomocí webscrapingu a analyzována s využitím velkých jazykových modelů pro tematickou analýzu a klasifikaci.
description: Data mohou podléhat autorským právům platformy (Parlamentní listy), která komentářové sekce po dvou dnech od zveřejnění článku cíleně skrývá. Komentáře mohou obsahovat osobní údaje (pokud je přispěvovatel v komentáři zveřejnil) a s ohledem na množství není důsledná ruční anonymizace možná.
DOI: 10.5281/zenodo.17866760
title: Ultrafast dissociation of water producing atomic oxygen following excitation above the O 1s threshold

description: Dataset pertaining to the manuscript "Ultrafast dissociation of water producing atomic oxygen following excitation above the O 1s threshold", to be published. Using resonant Auger electron spectroscopy and simulations, we identify channels leading to ultrafast fragmentation of gaseous water molecules when core-excited above the O 1s ionization threshold. Here we give the data of the theoretical figures of our manuscript in numeric form, excluding and including convolution with a Gaussian to simulate apparatus broadening.

Contact person regarding this data set: Uwe Hergenhahn, uhe@fhi.mpg.de . If you use these data for your scientific work, we kindly ask you to send us a copy or reference of your published results.

Version history:1 - initial release
DOI: 10.15468/dl.5j5jwx
title: Occurrence Download

description: A dataset containing 1201415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-84.16207 10.04034, -84.17214 10.04034, -84.17083 10.03221, -84.19098 10.03221, -84.19229 10.04034, -84.21243 10.04034, -84.21113 10.03221, -84.2212 10.03221, -84.21989 10.02407, -84.22997 10.02407, -84.25011 10.02407, -84.24881 10.01593, -84.25888 10.01593, -84.25758 10.0078, -84.26765 10.0078, -84.26374 9.983393, -84.27382 9.983393, -84.27252 9.975258, -84.2423 9.975258, -84.241 9.967123, -84.23093 9.967123, -84.22704 9.942719, -84.23711 9.942719, -84.23582 9.934584, -84.24589 9.934584, -84.2446 9.92645, -84.25467 9.92645, -84.25209 9.910181, -84.23195 9.910181, -84.23324 9.918315, -84.22317 9.918315, -84.22446 9.92645, -84.19424 9.92645, -84.19295 9.918315, -84.18288 9.918315, -84.18159 9.910181, -84.16145 9.910181, -84.16016 9.902047, -84.15009 9.902047, -84.1488 9.893912, -84.12866 9.893912, -84.12738 9.885778, -84.11731 9.885778, -84.11474 9.86951, -84.10467 9.86951, -84.10083 9.845108, -84.04041 9.845108, -84.04297 9.861376, -84.0329 9.861376, -84.03418 9.86951, -84.02411 9.86951, -84.02667 9.885778, -84.0166 9.885778, -84.01789 9.893912, -83.99775 9.893912, -83.99646 9.885778, -83.98639 9.885778, -83.98768 9.893912, -83.97761 9.893912, -83.96754 9.893912, -83.96882 9.902047, -83.95875 9.902047, -83.96003 9.910181, -83.97011 9.910181, -83.97397 9.934584, -83.98404 9.934584, -83.98533 9.942719, -83.9954 9.942719, -83.99798 9.958989, -83.98791 9.958989, -83.9905 9.975258, -83.98043 9.975258, -83.98302 9.991528, -84.01324 9.991528, -84.01453 9.999664, -84.02461 9.999664, -84.02591 10.0078, -84.03598 10.0078, -84.03338 9.991528, -84.04345 9.991528, -84.04216 9.983393, -84.07237 9.983393, -84.07367 9.991528, -84.08374 9.991528, -84.09025 10.03221, -84.1104 10.03221, -84.1117 10.04034, -84.12177 10.04034, -84.12308 10.04848, -84.13315 10.04848, -84.13185 10.04034, -84.15199 10.04034, -84.1533 10.04848, -84.16337 10.04848, -84.16207 10.04034))",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1201415 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044548-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17866759
title: Ultrafast dissociation of water producing atomic oxygen following excitation above the O 1s threshold

description: Dataset pertaining to the manuscript "Ultrafast dissociation of water producing atomic oxygen following excitation above the O 1s threshold", to be published. Using resonant Auger electron spectroscopy and simulations, we identify channels leading to ultrafast fragmentation of gaseous water molecules when core-excited above the O 1s ionization threshold. Here we give the data of the theoretical figures of our manuscript in numeric form, excluding and including convolution with a Gaussian to simulate apparatus broadening.

Contact person regarding this data set: Uwe Hergenhahn, uhe@fhi.mpg.de . If you use these data for your scientific work, we kindly ask you to send us a copy or reference of your published results.

Version history:1 - initial release
DOI: 10.15468/dl.jzdh9g
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvatoria alvaradoi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044600-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5286/isis.e.rb2420503-1
title: Quantitative calibration of Neutron Resonance Transmission Imaging (NRTI) for archaeometallurgy analysis

description: Neutron Resonance Transmission Imaging (NRTI) is an innovative technique for non-destructive elemental analysis and 2D imaging of ihonomogenous materials. Unlike conventional neutron radiography, NRTI preserves detailed energy information for each pixel, enabling enhanced analysis of elemental distribution within materials. Recent advancements, exemplified by a PhD project in collaboration with INES instrument scientist, have focused on refining the NRTI setup and data normalization at the INES beamline and applying it to analyze the composition and distribution of bronze and brass traces in ancient Roman crucibles. This application underscores the significance of understanding historical metallurgy, especially regarding copper alloys, for unravelling technological advancements throughout civilizations, with a first but rough attempt of elemental quantification with the imaging method. The proposed experiment aims to further enhance the accuracy and reliability of NRTI in the framework of archaeometallurgy studies by calibrating the technique using certified standards mirroring the compositions of ancient metals.
DOI: 10.15468/dl.249ceg
title: Occurrence Download

description: A dataset containing 28598 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Personal library collection of Martin Angel of published and unpublished Halocyprid (Ostracoda) occurrences"
 ]
}

 The dataset includes 28598 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044599-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5286/isis.e.rb2420503
title: Quantitative calibration of Neutron Resonance Transmission Imaging (NRTI) for archaeometallurgy analysis

description: Neutron Resonance Transmission Imaging (NRTI) is an innovative technique for non-destructive elemental analysis and 2D imaging of ihonomogenous materials. Unlike conventional neutron radiography, NRTI preserves detailed energy information for each pixel, enabling enhanced analysis of elemental distribution within materials. Recent advancements, exemplified by a PhD project in collaboration with INES instrument scientist, have focused on refining the NRTI setup and data normalization at the INES beamline and applying it to analyze the composition and distribution of bronze and brass traces in ancient Roman crucibles. This application underscores the significance of understanding historical metallurgy, especially regarding copper alloys, for unravelling technological advancements throughout civilizations, with a first but rough attempt of elemental quantification with the imaging method. The proposed experiment aims to further enhance the accuracy and reliability of NRTI in the framework of archaeometallurgy studies by calibrating the technique using certified standards mirroring the compositions of ancient metals.
DOI: 10.5286/isis.e.rb2500094-1
title: Poly(disulfide)rotaxane slide-ring hydrogels with recoverable stretchability

description: Polyrotaxanes (PR) are structures based on the threading of macrocycles on an axis with end-stoppers; in pseudoPR (PPR), cycles can slide in and out of the axis. In our recent publication, macrocyclic thiolated-cyclodextrins (SHCD) were threaded onto PEG through host-guest interactions to fabricate thiol-rich PPR (SPPR) slide-ring structures. In situ oxidation of thiols creates disulfide bridges between threaded SHCD, crosslinking SPPR into soft hydrogels. To add stoppers to the polymer ends, PEG terminated with thiols (SHPEG) was used to replace PEG in this work. In this case, the oxidation of thiols leads to disulfide connections between SHPEG terminals with other polymers, threaded SHCD, or unthreaded SHCD, which will prevent SHCD from unthreading and convert SPPR to poly(disulfide)rotaxane (PSR). Owing to the sliding of SHCD on the axis, PSR hydrogels display remarkable stretchability and significantly higher toughness than the SPPR hydrogels because the polymer ends of PSR were capped and SHCD could not unthread from the axis under stress. Furthermore, the reversible stretchability of PSR hydrogels strongly depends on polymer entanglement, which applies topological restrictions on the deformation of PSR supramolecular structures and promotes the recovery. Thus, except for the static structures formed in these gels, this work also plans to conduct in situ hydrogel-stretching SANS studies to characterise the structural evolution under tensile deformation and its recovery.
DOI: 10.15468/dl.9a9fz6
title: Occurrence Download

description: A dataset containing 2272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boselaphus tragocamelus",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 2272 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044602-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5286/isis.e.rb2500094
title: Poly(disulfide)rotaxane slide-ring hydrogels with recoverable stretchability

description: Polyrotaxanes (PR) are structures based on the threading of macrocycles on an axis with end-stoppers; in pseudoPR (PPR), cycles can slide in and out of the axis. In our recent publication, macrocyclic thiolated-cyclodextrins (SHCD) were threaded onto PEG through host-guest interactions to fabricate thiol-rich PPR (SPPR) slide-ring structures. In situ oxidation of thiols creates disulfide bridges between threaded SHCD, crosslinking SPPR into soft hydrogels. To add stoppers to the polymer ends, PEG terminated with thiols (SHPEG) was used to replace PEG in this work. In this case, the oxidation of thiols leads to disulfide connections between SHPEG terminals with other polymers, threaded SHCD, or unthreaded SHCD, which will prevent SHCD from unthreading and convert SPPR to poly(disulfide)rotaxane (PSR). Owing to the sliding of SHCD on the axis, PSR hydrogels display remarkable stretchability and significantly higher toughness than the SPPR hydrogels because the polymer ends of PSR were capped and SHCD could not unthread from the axis under stress. Furthermore, the reversible stretchability of PSR hydrogels strongly depends on polymer entanglement, which applies topological restrictions on the deformation of PSR supramolecular structures and promotes the recovery. Thus, except for the static structures formed in these gels, this work also plans to conduct in situ hydrogel-stretching SANS studies to characterise the structural evolution under tensile deformation and its recovery.
DOI: 10.5286/isis.e.rb2520371-2
title: Magnetic order in a frustrated triangular-lattice rare-earth antiferromagnet

description: We propose neutron powder diffraction measurements to determine the ground state magnetic structure in the layered frustrated magnet CuNdO2, where Kramers Nd3+ ions with effective spin-1/2 form a triangular lattice with frustrated antiferromagnetic couplings (filled-shell Cu+ ions are non-magnetic). We have a well-characterized powder sample where thermodynamic measurements evidence onset of long-range magnetic order below 0.8 K, so we apply for the He3 low-temperature insert and WISH to determine the magnetic structure. Related research on Nd3+ ions in similar crystal-field environments suggests an Ising-like character, which would make the material an ideal candidate to explore the physics of Ising frustration in the presence of a sizeable exchange interactions, where the excitations spectrum could also be probed experimentally, in contrast to other candidate Ising triangular systems where the interaction scale is an order of magnitude smaller and therefore experimentally not accessible with current INS spectrometers.
DOI: 10.5286/isis.e.rb2510696-3
title: Developing an Assay to Monitor Neuronal Ceroid Lipofuscinoses Type 7 Flipping Activity in the Lipid Matrix

description: Neuronal Ceroid Lipofuscinoses Type 7 (CLN7) is a Transporter localised to the lysozyme. Genetic mutations associated with CLN7 lead to Neuronal Ceroid Lipofuscinosis. The function of CLN7 is also poorly characterised. Our collaborators recently obtained some highly indicative data from the proteomic analysis of CLN7 knockout mouse models that suggests lysophosphoglycerol (LPG) and/or phosphoglycerol (PG) as a likely candidates for transport by CLN7. We require a direct biochemical assay confirming lipid flipping of either LPG or PG to support a publication and thus propose to use Neutron reflectometry on samples of CLN7 reinstituted into supported lipid bilayers (SLBs) to track the flipping of PG or LPG from one side of the membrane to the other.
DOI: 10.15468/dl.7snhy3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.271 2.914175, 100.200647 2.908606, 100.132028 2.892036, 100.066835 2.864874, 100.006674 2.82779, 99.95302700000001 2.781696, 99.90721600000001 2.72773, 99.870367 2.667221, 99.843388 2.60166, 99.82694100000001 2.532661, 99.82143000000001 2.461924, 99.826988 2.39119, 99.84347699999999 2.322202, 99.87049 2.256657, 99.90736 2.196169, 99.95317900000001 2.142226, 100.006818 2.096156, 100.066957 2.059092, 100.132117 2.031947, 100.200694 2.015388, 100.271 2.009822, 100.341306 2.015388, 100.409883 2.031947, 100.475043 2.059092, 100.535182 2.096156, 100.588821 2.142226, 100.63464 2.196169, 100.67151 2.256657, 100.698523 2.322202, 100.715012 2.39119, 100.72057 2.461924, 100.715059 2.532661, 100.698612 2.60166, 100.671633 2.667221, 100.634784 2.72773, 100.588973 2.781696, 100.535326 2.82779, 100.475165 2.864874, 100.409972 2.892036, 100.341353 2.908606, 100.271 2.914175))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044601-251120083545085/datasets/export for details.
DOI: 10.6084/m9.figshare.30834287
title: source data_NMICROBIOL-24124010E

description: The gut microbiome of people living with HIV (PLWH) has been characterized but its role in influencing host immunity and associated clinical features are unclear. Here, we used shotgun metagenomics to characterize the fecal microbiome of two geographically-distinct cohorts of PLWH and healthy controls in Israel and Ethiopia. We uncovered disease-specific, geographically divergent microbial patterns including a shift from <i>Bacteroides</i> to <i>Prevotella</i> species in an Israeli cohort, and multiple multiple Enterobacteriaceae species including <i>Escherichia coli</i> and <i>Klebsiella quasivariicola</i> species in an Ethiopian cohort. We identified correlations between HIV-related dysbiosis and the extent of systemic immunodeficiency, as proxied by peripheral CD4+ T cell counts. Fecal microbiome transplantation (FMT) from PLWH with high peripheral CD4+ T cells induced colonic epithelium-associated CD4+ T cells in germ-free or antibiotic-treated recipient mice. Impaired epithelium-associated lymphocyte induction in FMT recipients from severely immunodeficient PLWH donors was associated with altered protection from <i>Cryptosporidium parvum</i> infection. Collectively, our results suggest a link between systemic immunodeficiency and associated intestinal dysbiosis in PLWH, resulting in impaired gut mucosal immunity
DOI: 10.6084/m9.figshare.30834287.v3
title: source data_NMICROBIOL-24124010E

description: The gut microbiome of people living with HIV (PLWH) has been characterized but its role in influencing host immunity and associated clinical features are unclear. Here, we used shotgun metagenomics to characterize the fecal microbiome of two geographically-distinct cohorts of PLWH and healthy controls in Israel and Ethiopia. We uncovered disease-specific, geographically divergent microbial patterns including a shift from <i>Bacteroides</i> to <i>Prevotella</i> species in an Israeli cohort, and multiple multiple Enterobacteriaceae species including <i>Escherichia coli</i> and <i>Klebsiella quasivariicola</i> species in an Ethiopian cohort. We identified correlations between HIV-related dysbiosis and the extent of systemic immunodeficiency, as proxied by peripheral CD4+ T cell counts. Fecal microbiome transplantation (FMT) from PLWH with high peripheral CD4+ T cells induced colonic epithelium-associated CD4+ T cells in germ-free or antibiotic-treated recipient mice. Impaired epithelium-associated lymphocyte induction in FMT recipients from severely immunodeficient PLWH donors was associated with altered protection from <i>Cryptosporidium parvum</i> infection. Collectively, our results suggest a link between systemic immunodeficiency and associated intestinal dysbiosis in PLWH, resulting in impaired gut mucosal immunity