cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.s2633a
title: Occurrence Download

description: A dataset containing 952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Pinus densata"
 ]
}

 The dataset includes 952 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006442-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nztc8x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia macrops Maul, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((50.4237 -16.4452,50.6026 -16.1504,44.9648 -16.1504,44.9648 -25.1504,47.5481 -25.1504,49.8976 -18.3404,50.0029 -17.5803,50.4067 -17.0878,50.4237 -16.4452))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010248-250525065834625/datasets/export for details.
DOI: 10.25919/wyhz-f681
title: Parkes observations for project P595 semester 2025APRS_06

description: We propose to continue the PULSE@Parkes project in which high school students from Australia and around the World use the Parkes radio telescope in a remote observing model to observe and analyse pulsar data. The data from some PULSE@Parkes observations are used to support the space missions, other observations supplement the P456 Pulsar Timing Array project and the remainder were chosen in order to make a detailed analysis of pulsar timing irregularities and intermittency.
DOI: 10.15468/dl.kjvtht
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinidia chinensis",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049751-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.susr5v
title: Occurrence Download

description: A dataset containing 547813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lycopus europaeus"
 ]
}

 The dataset includes 547813 records from 2335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049616-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8akjxr
title: Occurrence Download

description: A dataset containing 5764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((124.33349 -69.60403,221.08845 -69.60403,221.08845 -30.91861,124.33349 -30.91861,124.33349 -69.60403))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Metrosideros robusta"
 ]
}

 The dataset includes 5764 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011400-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78gyey
title: Occurrence Download

description: A dataset containing 2873196461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hololepida, Lepidonotus, Polynoe, Polynoidae, Autolytus, Pionosyllis, Animalia, Animalia, Rhynchonereella, Vanadis, Aphroditella, Animalia, Laetmonice, Pontogenia, Grubeulepis, Animalia, Hemipodia, Glycinde, Goniada, Goniadella, Animalia, Nereimyra, Ophiodromus, Aglaophamus, Micronephthys, Animalia, Alitta, Ceratonereis, Eunereis, Laeonereis, Micronereis, Animalia, Nectoneanthes, Animalia, Platynereis, Simplisetia, Tylorrhynchus, Websterinereis, Anaitides, Animalia, Eumida, Hypereteone, Mystides, Nereiphylla)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2873196461 records from 55949 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011296-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.fbg79cp4b
title: Soil microfauna mediate multifunctionality under multilevel warming in a primary forest

description: Soil microfauna play a crucial role in maintaining multiple functions
 associated with soil phosphorous, nitrogen, and carbon cycling. Although
 both soil microfauna diversity and multifunctionality are strongly
 affected by climate warming, it remains unclear how their relationships
 respond to different levels of warming. We conducted a 3-year
 multilevel warming experiment with five warming treatments in a
 subtropical primary forest. Using infrared heating systems, the soil
 surface temperature in plots was maintained at 0.8 ℃, 1.5 ℃, 3.0 ℃, and
 4.2 ℃ above ambient temperature (control, CK). Our findings indicate that
 low-level (+0.8-1.5 ℃) warming increased soil multifunctionality,
 nematode, and protist diversity compared to control, while high-level
 (+4.2 ℃) warming significantly and negatively affected these variables. We
 also identified significant positive correlations between soil
 multifunctionality and nematode and protist diversity in the 0-10 cm soil
 layer. Importantly, we found that soil multifunctionality and protist
 diversity did not change significantly under temperatures 3.0 ℃ above
 ambient. Our results imply that an increase of ~3 ℃ may represent
 a critical threshold in subtropical forests, which is of great importance
 for identifying response measures to global warming from the perspective
 of microfauna in the surface soil. Our finding offers new evidence of the
 role of soil microfauna in regulating multifunctionality with the
 magnitude of warming in primary forests.
description: # Soil microfauna mediate multifunctionality under multilevel warming in a
 primary forest
 [https://doi.org/10.5061/dryad.fbg79cp4b](https://doi.org/10.5061/dryad.fbg79cp4b) The dataset contains soil multifunctionality and species richness of different eukaryotic groups for 20 experimental plots in the 0-10 cm and 10-20 cm soil layers under multilevel warming in a primary forest. ## Description of the data and file structure The plot-level dataset contains one row per experimental plot with soil multifunctionality and species richness of different eukaryotic groups. The abbreviations of these variables are listed below. Further information on the study design, sampling method, and the calculation of these variables is given in the associated manuscript. *Column names* Plot_ID: experimental plots  FU: fungi richness (number, no unit) PR: protest richness (number, no unit) NE: nematode richness (number, no unit) RO: rotifer richness (number, no unit) TA: tardigrade richness (number, no unit) AR: arthropod richness (number, no unit) MU: soil multifunctionality (number, no unit) Soil layer (cm): sampled with 0-10 cm and 10-20 cm *Row names* CK: ambient temperature WA: 0.8 ℃ warming WB: 1.5 ℃ warming WC: 3.0 ℃ warming WD: 4.2 ℃ warming
DOI: 10.5061/dryad.547d7wmhd
title: Co-assembly of 98TBs of metagenomes from human gut using exascale assembler MetaHipMer

description: We report data and analyses from co-assembly of 74,559 human gut
 microbiome datasets totaling 98TB. The co-assembly resulted in 17M
 contigs, 1.1M of which were of viral origin, and 803 of them were complete
 viral genomes.
description: # Co-assembly of 98TBs of metagenomes from human gut using exascale
 assembler MetaHipMer
 [https://doi.org/10.5061/dryad.547d7wmhd](https://doi.org/10.5061/dryad.547d7wmhd) The data deposit contains list of SRA accession ids, assembled contigs, and sequence ids of plasmids and viruses. ## Description of the data and file structure List of files with short description of their content: * *SupplementaryTable1.xls*: A list of SRA record ids that were co-assembled. * *hmb_exa_contigs.fna.gz*: Fasta file with all the assembled contigs. * *hmb-all-virus.txt.gx*: Sequence headers of all viral sequences from genomad and CheckV pipeline. * *hmb-all-plasmid.txt.gz*: Sequence headers of all plasmid sequences. # Sharing/Access information Data was derived from the following sources: * Sequence Read Archive (SRA)
DOI: 10.5061/dryad.h70rxwdt5
title: Data from: Protein kinase FaSnRK2.6 phosphorylates transcription factor FabHLH3 to regulate anthocyanin homeostasis during strawberry fruit ripening

description: Strawberry (Fragaria×ananassa) is a model plant for studying
 non-climacteric fruit ripening regulated by abscisic acid (ABA). However,
 the signaling of ABA in the regulation of fruit coloration is not fully
 understood. Here, a transcription factor FabHLH3 key to fruit coloration
 is identified by yeast two hybrid library screening using FaSnRK2.6 as a
 bait, an ABA core signaling component negative to ripening. Indeed, this
 interaction is also confirmed by firefly luciferase complementation assay
 and pull-down assay. RT-qPCR and Western blotting analysis confirm FabHLH3
 is expressed ubiquitously in strawberry and stably during fruit
 development. Manipulating both FabHLH3 and FaSnRK2.6 expression by
 overexpression and interference demonstrates that FabHLH3 and FaSnRK2.6
 promote and inhibit strawberry fruit coloration, respectively, using the
 marker gene FaUFGT, key to anthocyanin biosynthesis. FaSnRK2.6 can
 phosphorylate FabHLH3, which promotes FaUFGT expression by the directly
 binding to its promoter. The phosphorylation inhibits the binding of
 FabHLH3 to FaUFGT promoter, consequently suppressing FaUFGT expression.
 Altogether, FaSnRK2.6, a negative kinase in ripening, interacts with and
 phosphorylates FabHLH3 to suppress FaUFGT expression. With the increase of
 ABA content in strawberry fruit ripening, the expression of FaSnRK2.6
 decreased, which released FabHLH3 transcription activity and enhanced
 FaUFGT expression, finally promoting the coloration. Thus, our findings
 fill a gap how FaSnRK2.6 negatively regulates strawberry fruit coloration
 and ripening by FabHLH3.
description: # Protein kinase FaSnRK2.6 phosphorylates transcription factor FabHLH3 to
 regulate anthocyanin homeostasis during strawberry fruit ripening
 [https://doi.org/10.5061/dryad.h70rxwdt5](https://doi.org/10.5061/dryad.h70rxwdt5) ## Description of the data and file structure It (Sequence.docx) contains the  FabHLH3 fasta sequence、FabHLH3 protein sequence、FaSnRK2.6 fasta sequence、FaSnRK2.6 protein sequence.
DOI: 10.6084/m9.figshare.31173811
title: What is more?

description: This dataset contains the responses of 200 participants to the What is more task (https://github.com/marcosrosetti/WhatIsMoreTask), including choice of shape, reaction time, and demographic information.
DOI: 10.6084/m9.figshare.31173811.v1
title: What is more?

description: This dataset contains the responses of 200 participants to the What is more task (https://github.com/marcosrosetti/WhatIsMoreTask), including choice of shape, reaction time, and demographic information.
DOI: 10.5061/dryad.cz8w9gjck
title: Reintroducing Akanthomyces ampullifer: providing genetic barcodes, culture, and updated description for the dipteran pathogen rediscovered in Germany

description: The genus Akanthomyces (Ascomycota, Hypocreales) includes entomopathogenic
 species known to infect a variety of insects and spiders. In this study,
 we present the first isolate of A. ampullifer characterized by molecular
 methods, found on dead bodies of the common cave limoniid Limonia
 nubeculosa (Diptera) in the subterranean spaces of Southwestern Germany.
 In total, seven specimens exhibited distinctive morphological traits that,
 when compared with historical records, confirm their identification as A.
 ampullifer—particularly noted for its affinity to dipteran hosts. Absent
 from culture collections and molecular repositories, this species has
 eluded detailed scientific documentation using modern methods. Our
 research bridges this knowledge gap, providing the first genetic
 identification barcodes of five genes, living culture, cultivation
 requirements, and an updated description. This overlooked fungus is
 phylogenetically most closely related to the species A. pyralidarum, A.
 laosensis and some other species mostly associated with adult moths. It
 demonstrates a unique morphological signature with monoblastic phialides
 forming a layer on the surface of synnemata and produces long,
 cylindrical, chain-forming conidia. It prefers lower temperatures,
 exhibiting an inability to grow at 25 °C, coupled with notably slow growth
 in culture.
description: # Reintroducing *Akanthomyces ampullifer*: providing genetic barcodes,
 culture, and updated description for the dipteran pathogen rediscovered in
 Germany
 [https://doi.org/10.5061/dryad.cz8w9gjck](https://doi.org/10.5061/dryad.cz8w9gjck) ## Description of file structure **ITS LSU TEF RPB1 RPB2 alignment final.fast**a Concatenated alignment of ITS (1-563 bp), LSU (564-1404 bp), TEF (1405-2361 bp), RPB2 (2362-3082 bp), RPB2 (3083-4083 bp)**Akanthomyces Tree edited.pdf** The best-scoring maximum likelihood tree was calculated from ITS, LSU, TEF1-α, RPB1, and RPB2 loci sequences showing species relationships within the genus Akanthomyces and the position of A. ampullifer CCF 6648. Maximum likelihood bootstrap supports are attached to nodes, with only values &gt;70 % shown; lower supports are indicated with a hyphen; ex-type strains and type specimens are designated by a superscript T; the tree is rooted with Samsoniella species **Tree_Akanthomyces_5G.newick** The best-scoring maximum likelihood tree in Newick format **Tree_Akanthomyces_5G.nex** The best-scoring maximum likelihood tree in Nexus format **Table Sequence accessions Substrate.xlsx** Specimens of Akanthomyces used in phylogenetic analysis and their respective accession numbers for DNA sequences, and substrate from which they were isolated
DOI: 10.5061/dryad.wstqjq2w5
title: Satellite data of the 2018 Sierra Negra eruption in the Galápagos islands

description: The 2018 eruption of Sierra Negra volcano, Galápagos, Ecuador has provided
 new insights into the mechanisms of caldera resurgence, subsidence, and
 fissuring at basaltic shield volcanoes. Here, we integrate local (~0.4 km)
 seismo-acoustic records and regional (~85 km) infrasound array data to
 present new observations of the 2018 Sierra Negra eruption with improved
 time and spatial resolutions. These observations include: air-to-ground
 coupling ~2 hours before the time of the eruption onset, migration of the
 infrasound tremor from 22:54 June 26 to 12:31 June 27 UT (all times in
 UT), and persistent infrasound detections during the weeks between 5 July
 and 18 August from an area that does not coincide with the previously
 documented eruptive fissures. We interpret air-to-ground coupling as
 infrasound tremor generated in the nearby fissures before the main
 eruptive phase started, although ambiguity remains in interpreting a
 single seismic-infrasonic sensor pair. The progressive location change of
 the infrasound tremor agrees with the migration of the eruption down the
 north flank of Sierra Negra at a rate of ~0.15 ± 0.04 m/s. The weeks-long
 persistent detections coincide with a region that has thermal anomalies,
 co-eruptive deformation, lava fields, and geological features that could
 be interpreted as multiple lava tube skylights. Our observations and
 interpretations provide constraints on the mechanisms underlying fissure
 formation and magma emplacement at Sierra Negra.
description: Satellite imagery retrieved from Planet Labs. We store data as
 downloaded from Planet Labs. We use sat data to retrieve location of
 thermal anomalies during the 2018 Sierra Negra eruption in the
 Galapagos. 
description: # Visual and multi-band satellite imagery for the 2018 Sierra Negra
 eruption.
 [https://doi.org/10.5061/dryad.wstqjq2w5](https://doi.org/10.5061/dryad.wstqjq2w5) We store visual and multi-band satellite data used to show thermal anomalies during the 2018 eruption of Sierra Negra (Galapagos).  ## Description of the data and file structure The dataset consist of twelve geo-referenced tif files that capture the region where the 2018 eruption of Sierra Negra took place. There is a mix of visual and multi-band satellite imagery. We only use the visual and near-infrared bands in our manuscript. Each tif file is store inside a folder name after the date the image was capture by the satellite.   Coordinates shown in the metadata of the tif files are projected in the UTM system zone 15 South and geodetic reference frame WGS84. ## Sharing/Access information Further data downloads might be possible at Planet Labs : [https://api.planet.com](https://api.planet.com) These images can easily be read and analyzed using free software such as QGIS: [https://www.qgis.org](https://www.qgis.org)
DOI: 10.7910/dvn/ibt9wm
title: Influence of T-Consciousness Fields on Germination, Growth, and Biochemical Responses of Wheat under Drought Stress

description: The data are from a study aimed at investigating the effects of two types of consciousness fields, including Faradarmani and consciousness charging, on wheat plants under drought stress. For this purpose, two separate experiments were designed. In the first experiment, the effect of these fields on the germination and growth of wheat seeds of the Bahar cultivar under drought stress induced with polyethylene glycol (PEG 6000) at two levels of -0.6 MPa and -1.2 MPa was evaluated after eight days. In the second experiment, the seeds were grown in pots for three weeks, after which drought stress was applied by stopping irrigation and continued for three weeks.
DOI: 10.5281/zenodo.18406565
title: NASA SPoRT Basin Average Training Data

description: The included data files contain basin-average SPoRT-LIS relative soil moisture [total column (0-2 m depth) and four model layers (0-10, 10-40, 40-100, and 100-200 cm depths)], MRMS QPE, and gauge observation data for each river basin. These files were used to train and tune the developed basin-specific LSTM models. The number in each unzipped file indicates the corresponding USGS site number.
DOI: 10.5281/zenodo.7019930
title: NASA SPoRT Basin Average Training Data

description: The included data files contain basin-average SPoRT-LIS relative soil moisture [total column (0-2 m depth) and four model layers (0-10, 10-40, 40-100, and 100-200 cm depths)], MRMS QPE, and gauge observation data for each river basin. These files were used to train and tune the developed basin-specific LSTM models. The number in each unzipped file indicates the corresponding USGS site number.
DOI: 10.5061/dryad.69p8cz9b7
title: Data from: Long-sperm precedence and other cryptic female choices in Drosophila melanogaster

description: Females that mate multiply make postmating choices about which sperm
 fertilize their eggs (cryptic female choice); however, the male
 characteristics they use to make such choices remain unclear. In this
 study, we sought to understand female sperm use patterns by evaluating
 whether Drosophila melanogaster females adjust sperm use (second male
 paternity) in response to four main factors: male genotype, male courtship
 effort, male pheromone alteration, and male postmating reproductive
 morphology. Our experiment was replicated across four different D.
 melanogaster lines, in a full factorial design, including a pheromone
 manipulation in which second males were perfumed to resemble
 heterospecific (D. yakuba) males. We found that females prefer longer
 sperm—regardless of mating order—in almost all contexts; this observed
 pattern of ‘long-sperm precedence’ is consistent with female postmating
 choice of high-fitness male traits. Nonetheless, we also found that this
 general preference can be plastically altered by females in response to
 effects including perfuming treatment; this differential female sperm use
 is between otherwise identical males, and therefore solely
 female-mediated. Furthermore, our finding that females exercise choice
 using diverse criteria suggests a possible mechanism for the maintenance
 of variation in sexually selected male traits.
description: # Long-sperm precedence and other cryptic female choices in *Drosophila
 melanogaster* How do females make choices about which sperm will fertilize
 their eggs? In this study, we assess four geographically diverse
 *Drosophila melanogaster* lines to show that females strongly prefer long
 sperm—a pattern consistent with female preference for high-fitness males.
 In addition, we perfumed males to show that females can adjust this
 general preference based on other factors, including pheromones. Because
 this adjustment occurs between genotypically identical males, it is
 entirely female-mediated. ## Data Our behavioral and morphological data
 are composed of 10 data files. 'Courtship.csv' and
 'paternity.csv' contain our raw mating and paternity data. This
 mating data was restructured for our remating analysis in the
 'remating.csv' file. Morphology data are summarized in
 'morphology.csv'. Some morphology data was restructured for
 making figures, including 'SR_testis_length.csv' (seminal
 receptacle length, testis length, sperm length), 'area.csv'
 (spermatheca area), 'mass.csv' (female and male reproductive
 tract mass), and 'thorax_length.csv' (female and male thorax
 lengths). CHC data are included as 'CHC.csv'. Finally, averages
 for each *D. melanogaster* line are included in 'means.csv'. See
 'metadata.xlsx' for the metadata of each file. ## Scripts
 Statistical analyses were conducted using R version 4.3.1. Code for all
 figures and statistical analyses are included in
 'CFC_mel_analysis.R' in chronological order by figure.