cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g73t2/1
title: HDY-15-OR0111R_phenotypic_data

description: experimental data containing informations related to the variables : FAMILLE	FEMALE	MALE	IC	clonealpha	BLOC	ZONE	X	Y	PLOT	IND	HT32
DOI: 10.5061/dryad.g73t2/2
title: HDY-15_OR0111R_genotypes

description: molecular data: tables with row corresponding to male, female and progenies (clones) and columns corresponding to allele dose (0, 1, 2)
DOI: 10.5061/dryad.pk056/12
title: Genus_Table

description: Contains 16SrRNA raw abundances for each gorilla group at genus level
DOI: 10.5061/dryad.pk056/13
title: Phyla_Table

description: Contains 16SrRNA raw abundances for each gorilla group at phyla level
DOI: 10.5061/dryad.pk056/14
title: SCFA
DOI: 10.5061/dryad.pk056/15
title: Metabolomics_data

description: Contains metabolite concentrations (GC-MS spectra expressed as analyte concentration relative to hentriacontanoic acid per gram Dry Weight (relative concentration), i.e., as target compound peak area divided by the internal standard (IS) peak area (IS concentration is the same in all samples)
DOI: 10.5061/dryad.pk056/16
title: My454

description: Perl script used to process raw 16S rRNA amplicons (primer trimming and removal of low quality sequences according to specified criteria, see detailed description in file)
DOI: 10.5061/dryad.pk056/4
title: Genus_taxonomy

description: Contains taxonomic information and 16S rRNA sequence similarity % for every genus in Genus_table.
DOI: 10.5061/dryad.pk056/6
title: Phyla_taxonomy

description: Contains taxonomic information and 16S rRNA sequence similarity % for every phylum in Phyla_table.
DOI: 10.5061/dryad.pk056/9
title: Feeding

description: Contains the number of observation days feeding on different food types consumed by all members of H1 and H2 (habituated gorilla groups) during 61 observation days. THV=Terrestrial herbaceous vegetation, FR=Fruit, LV=Leaves, INS=Insects (termites), BK=Bark.
DOI: 10.5061/dryad.rv5mg/1
title: Parentage groups
DOI: 10.5061/dryad.rv5mg/2
title: Subordinates
DOI: 10.5061/dryad.sd15m/1
title: AdultDirSounds11Dec14Final
DOI: 10.5061/dryad.sd15m/2
title: Dryad Readme file adults

description: Describing the adult Gombe chimps data package including the unparsed digital copies of the chimp tapes and the metadata for the individual sound recordings.
DOI: 10.5061/dryad.sd15m/3
title: Gombe_biography-for_1971-3

description: The Gombe_biography for the chimpanzee individuals present during the span of time that the recordings were made. The Gombe biography contains 13 columns, but the ones most useful for analyzing the vocalizations are the name of the individual (column B), the birth date (column C), the name of the mother (column H) and the sex of the individual (column I). The columns are explained in Strier et al. [1]. 1. Strier, K.B. et al., The Primate Life History Database: A unique shared ecological data resource. Methods Ecol Evol, 2010, 1(2): p. 199-211.
DOI: 10.5061/dryad.sd15m/4
title: LIst of adult chimpanzee sounds

description: A list of names of adult vocalizations and other sounds as used in the spreadsheet (AdultDirSounds11Dec14Final.xls) and the Macaulay Library database. The first column contains the main categories of which the barks, eagle raa, grunts, hoots and screams are the most important. The second column contains the subdivisions of the barks, grunts, hoots and screams. The third column contains all the word variations that were used for each main category or subdivision thereof. Before counting the frequencies of the vocalizations, these word variations were converted into the name of the main category or subdivision thereof.
DOI: 10.5061/dryad.sd15m/5
title: Adults 1

description: This 96K/24bit audio file is 60 minutes long and contains 224 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen starts with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.tn28f/1
title: Input file for Structure

description: Input file for Structure. 139 isolates in total without two VNII isolates.
DOI: 10.5061/dryad.tn28f/2
title: Input file for SplitsTree

description: Input file for SplitsTree
DOI: 10.5061/dryad.tn28f/3
title: Input file for SmartPCA

description: Input file for SmartPCA
DOI: 10.5061/dryad.tn28f/4
title: Input file for MultiLoc

description: Input file for MultiLoc
DOI: 10.5061/dryad.v80q9/3
title: Dryad_mtDNA_Sebastes_Peter_Shum_Genbank_KP988027–KP988288

description: Mitochondrial control region of North Atlantic Sebastes (S. viviparus, S. fasciatus, S. norvegicus, S. mentella)
DOI: 10.5061/dryad.v80q9/4
title: Dryad_Rhodopsin_Sebastes_mentella_Peter_Shum_Genbank_KR818563–KR818700

description: Rhodopsin sequences of North Atlantic Sebastes mentella
DOI: 10.5061/dryad.vt536/1
title: Varroa jacobsoni data Mol Ecol 2015

description: Sampling locations and genotype data for Varroa jacobsoni using 12 microsatellite markers
DOI: 10.5061/dryad.1jf03/1
title: Dryad_Data_II

description: Data pertaining to social dominance status and measurements of MUP expression.
DOI: 10.5061/dryad.413f4/1
title: Nexus alignments including all taxa

description: Nexus alignments that include all taxa even those taxa (Minla ignotincta and Liocichla bugunorum) for which there are missing sequences for some loci.
DOI: 10.5061/dryad.413f4/2
title: Nexus alignments without MI and LB

description: Nexus alignments used in BEAST in which taxa with missing data for one or more loci (Minla ignotincta and Liocichla bugunorum) were excluded.
DOI: 10.5061/dryad.413f4/3
title: BEAST23_run1_analysis23

description: BEAUti xml file for analysis with partitioning only by locus.
DOI: 10.5061/dryad.413f4/4
title: BEAST23_run1_analysis24

description: BEAUti xml file with partitioning by both locus and codon position
DOI: 10.5061/dryad.413f4/5
title: Combined results from BEAST codon partitioned analysis

description: log and tree files from four replicate BEAST runs using partitioning by both codon and locus combined in LogCombiner
DOI: 10.5061/dryad.413f4/6
title: Combined results from BEAST gene only partitioned analysis

description: log and tree files from four replicate BEAST runs using only partitioning by locus combined in LogCombiner
DOI: 10.5061/dryad.413f4/7
title: BEAST analysis with gene partitioning and nuclear loci only

description: log and tree files from single run of BEAST (100,000,000 generations) with partitioning by gene and only the nuclear intron loci.
DOI: 10.5061/dryad.413f4/8
title: Supplemental file 1 GenBank accession numbers

description: GenBank accession numbers for all sequences used in this study.
DOI: 10.5061/dryad.717vp/1
title: Maximum clade credibility trees using the total alignement with no priors on divergence times.

description: Maximum clade credibility trees using the total alignment with no priors on divergence times. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
DOI: 10.5061/dryad.717vp/2
title: Maximum clade credibility trees using the truncated alignment with no priors on divergence times.

description: Maximum clade credibility trees using the truncated alignment with no priors on divergence times. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
DOI: 10.5061/dryad.72ft2/1
title: Seed retrieval data

description: Seed retrieval data
DOI: 10.5061/dryad.7r5m6/1
title: genotypes_input_files

description: Genotypes before and after flitering for missing values and minor allele frequencies; Description of the polymorphisms; Input files for BAPS, PowerMarker; Distance tree file
DOI: 10.5061/dryad.7r5m6/2
title: RandomForest_code_input_files

description: Code and input files for the random forest analysis
DOI: 10.5061/dryad.7r5m6/3
title: Kernel_smoothing_code_input file

description: Code and input files for the kernel smoothing analysis
DOI: 10.5061/dryad.7r5m6/4
title: samples_barcodes_coordinates

description: Samples description, barcodes for demultiplexing and GPS coordinates of sampling locations.
DOI: 10.5061/dryad.823f0/1
title: dataset
DOI: 10.5061/dryad.b0k20/1
title: Data Burger et al. ProcB

description: "sim" = MHC similar; "dissim" = MHC dissimilar; "Testost" = peripheral testosterone blood level; "µ" = mean; "ELA" = MHC antigens of horses; "VSL", "VCL", and "VAP" = sperm velocity measures
DOI: 10.5061/dryad.c5s06/2
title: Warbler measurements, museum specimens

description: This excel file includes two tabs, one with all individual-level measurements and one with all species-level measurements. Individual-level data include wing length and bill length, depth and width measured on museum specimens. Bill traits were measured three times for each individual to control for measurement error. Species-level life history traits (mass, incubation length, age at first flight) were compiled from the literature. Please see "methods" for more detail on data collection and analysis.
DOI: 10.5061/dryad.c5s06/3
title: Sparrow and waterfowl data, compiled from literature

description: This excel file includes one tab of species-level data. For each species, data on life history traits (mass, incubation length, time of first flight) were taken from the literature. Data on the phenotypic range of traits (bill length and tarsus length) within bird populations were taken from appendices of the "Birds of North America Life History" series. Please see the methods section for more information on data collection and analysis.
DOI: 10.5061/dryad.ds2nj/1
title: Global spatial ranges of zoonotic bat viruses

description: Shapefiles of global spatial ranges of 33 zoonotic bat virus species (following ICTV9 Virus Taxonomy). Ranges are upper-bound proxies for zoonotic transmission created by fusing together entire ranges of all known bat host species from systematically mined literature-based records of bat-virus associations. Original host distributions sourced from Fritz and Purvis 2010. Shapefiles follow projection 'long-lat' using WGS-1984 co-ordinate system. Created using package 'PBSmapping' in R version 3.1.1.
DOI: 10.5061/dryad.fh40b/1
title: Data set
DOI: 10.5061/dryad.n9b7r/1
title: Flow Results Compiled

description: Compilation of raw data from all flow cytometry experiments including surface staining and phosphoflow. Sheet 1 is all the data for each patient, Sheet 2 is the log2 fold change of the MFI used for the heat map (figure 2), Sheet 3 compares samples collected &lt;30d after diagnosis vs &gt;30d after diagnosis, Sheet 4 examines the effect of freeze-thawing samples on surface staining. Statistical analysis on each sheet.
DOI: 10.5061/dryad.n9b7r/2
title: ELISA Data (PTX3 IL17 and IFN)

description: Data from PTX3, IL-17 and IFN-gamma ELISAs.
DOI: 10.5061/dryad.ps837/1
title: Ulmus_minor_INFO_unigenes

description: Unigenes description. This document shows the sequence lenght; protein name; information from the best blast hit; GO terms associated to the sequence; Enzyme Codes (ECs); Domains; Sequence assiated to abiotic; biotic or both stimulus; Sequences with SNPs.
DOI: 10.5061/dryad.ps837/2
title: Ulmus_minor_INFO_redundant_sequences

description: Redundant sequences description. This document shows the sequence lenght; protein name; information from the best blast hit; GO terms associated to the sequence; Enzyme Codes (ECs); Domains; Sequence assiated to abiotic; biotic or both stimulus; Sequences with SNPs.
DOI: 10.5061/dryad.ps837/3
title: Ulmus_minor_KEEG_annotation_unigenes

description: Unigenes associated to different KEEG pathways
DOI: 10.5061/dryad.ps837/4
title: Ulmus_minor_GO_annotation_unigenes

description: GO annotation of Unigenes
DOI: 10.5061/dryad.ps837/5
title: Ulmus_minor_POLYMORPHISM_identification

description: Identification and location of SNPs and other polymorphisms
DOI: 10.5061/dryad.r12jk/1
title: SNP sequences and GENALEX file

description: Sequences of the 250 SNPs (together with their functional annotations) are available in tab 1 of the file. In tab 2, the original GENALEX file on the 183 successfully genotyped SNPs is provided.
DOI: 10.5061/dryad.rf623/1
title: Ellipsoid_Packings_Schaller_PRL_2015_Configurations.tar

description: This data contains particle positions and orientations of ellipsoid packings prepared with different preparation methods and compactified by tapping. The packings are imaged by X-Ray-tomography at 64mu/voxel.
DOI: 10.5061/dryad.sd15m/10
title: Adults 6

description: This 96K/24bit audio file is 36:20 minutes in length and contains 44 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen begins with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.sd15m/11
title: Adults 7

description: This 96K/24bit audio file is 20:44 minutes in length and contains 73 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen begins with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.sd15m/6
title: Adults 2

description: This 96K/24bit audio file is 31:06 minutes in length and contains 74 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen begins with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.sd15m/7
title: Adults 3

description: This 96K/24bit audio file is 16:09 minutes in length and contains 51 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen begins with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.sd15m/8
title: Adults 4

description: This 96K/24bit audio file is 23:08 minutes in length and contains 37 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen begins with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.sd15m/9
title: Adults 5

description: This 96K/24bit audio file is 36:17 minutes in length and contains 63 unparsed audio specimens of adult chimpanzee vocalizations. Each specimen begins with the recordist's (either Hetty van de Rijt-Plooij or Frans X. Plooij) voice announcement of the cut number.
DOI: 10.5061/dryad.tn28f/10
title: Aligned fasta file of LAC1
DOI: 10.5061/dryad.tn28f/11
title: Aligned fasta file of PLB1
DOI: 10.5061/dryad.tn28f/12
title: Aligned fasta file of SOD1
DOI: 10.5061/dryad.tn28f/13
title: Aligned fasta file of TEF1
DOI: 10.5061/dryad.tn28f/14
title: Aligned fasta file of URA5
DOI: 10.5061/dryad.tn28f/5
title: Input file for eBurst

description: Input file for eBurst
DOI: 10.5061/dryad.tn28f/6
title: Concatenated fasta file

description: Concatenated fasta file of all isolates with 8 loci.
DOI: 10.5061/dryad.tn28f/7
title: Aligned fasta file of CAP59
DOI: 10.5061/dryad.tn28f/8
title: Aligned fasta file of GPD1
DOI: 10.5061/dryad.tn28f/9
title: Aligned fasta file of IGS1
DOI: 10.5061/dryad.v01kb/1
title: dataset
DOI: 10.5061/dryad.017t8/1
title: matree-fasta

description: Data used for Figure 1C, "Evolutionary Tree of Malat1 in Mammals"
DOI: 10.5061/dryad.2ph0t/1
title: Phanerozoic Marine Bivalve Dataset

description: Supplementary Table 1: The newly revised and updated database used in this study based on a critical compilation of data from the Sepkoski Compendium and the Paleobiology Database. FADs and LADs indicate first and last appearances, respectively, in Ma based on the Geological Society of America Geological Time scale (v. 4.0) as compiled from Gradstein et al. (2012) and Cohen et al. (2012).
DOI: 10.5061/dryad.42vq4/1
title: Ratings of aggressive behaviour

description: The data file contains the observational data on aggressive and sexually inappropriate behaviour analysed for the study. The data file consists of 10 columns (ratings by staff) and N = 301 rows (each corresponding to an individual patient). For more detail please refer to the READ ME file.
DOI: 10.5061/dryad.4tn48/1
title: Experiment 1

description: Data_and_R_code_for_Fig1_and_S1
DOI: 10.5061/dryad.56p0f/1
title: Oswald et al 2015 NW Peru dry forest bird census data

description: Dry forest bird census data from northwest Peru. Locality name, date, latitude, longitude, elevation, species, number of individuals, and habitat (some missing data) are included in the spreadsheet.
DOI: 10.5061/dryad.717vp/3
title: Maximum clade credibility trees using the total alignment as well as fossil calibrations

description: Maximum clade credibility trees using the total alignment as well as fossil calibrations. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
DOI: 10.5061/dryad.717vp/4
title: Maximum clade credibility trees using the truncated alignment as well as fossil calibrations.

description: Maximum clade credibility trees using the truncated alignment as well as fossil calibrations. Trees were inferred using BEAST v1.62. Estimated ages of divergence are depicted in bold and posterior probabilities in italic. Abbreviations, Sb: Sorghum bicolor, Ta1 and Ta2: Triticum aestivum, Bd: Brachypodium distachyon.
DOI: 10.5061/dryad.717vp/5
title: Total alignment of Rp1 sequences from the 5 Poaceae genera used in this study.

description: This alignment was used to construct phylogenetic trees with and without calibration points and evaluate the incidence of recombination.
DOI: 10.5061/dryad.717vp/6
title: Truncated alignment of Rp1 sequences from the 5 Poaceae genera used in this study.

description: This alignment was used to construct phylogenetic trees with and without calibration points and to test for a correlation between positively-selected amino-acids and the incidence of recombination.
DOI: 10.5061/dryad.72ft2/2
title: Germination data

description: Seed germination data
DOI: 10.5061/dryad.8jj28/1
title: InfectionRecombinationRawData

description: This excel spreadsheet contains all of the raw data for all of the experiments reported in the main text of the associated manuscript.
DOI: 10.5061/dryad.8tq23/1
title: Dataset

description: Results of both plant-soil experiment and prey -response experiment
DOI: 10.5061/dryad.931h7/1
title: Morphological_matrix

description: This matriz contain quantitative data from the leaves and cones from field collections of Pinus aff. douglasiana, P. douglasiana, P. maximinoi, P. pseudostrobus and P. yecorensis.  The data are in txt format.
DOI: 10.5061/dryad.931h7/2
title: Haplotype_sequences

description: This file contain aligned sequences of plastid DNA of Pinus aff. douglasiana, P. douglasiana, P. maximinoi, P. pseudostrobus and P. yecorensis, an ~800 bp fragment of ycf1 gene.
DOI: 10.5061/dryad.931h7/3
title: Haplotype_assignments_by_individual

description: This file contain a list of pine collections (Pinus aff. douglasiana, P. douglasiana, P. maximinoi, P. pseudostrobus and P. yecorensis), and its haplotypes that correspon to an ~803 pb fragment of the ycf1 gene.
DOI: 10.5061/dryad.d644f/1
title: S. cerevisiae raw mRNA and protein measurements

description: Raw mRNA and protein measurements for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
DOI: 10.5061/dryad.d644f/2
title: S. cerevisiae log-transformed SCM-normalized mRNA and protein measurements

description: SCM-normalized mRNA and protein measurements for haploid budding yeast (S.cerevisiae) growing exponentially in rich medium with glucose
DOI: 10.5061/dryad.f06t6/1
title: Mixed models input file ARS

description: Raw data used in male annual reproductive success analysis.
DOI: 10.5061/dryad.f06t6/2
title: Mixed models input file for AMT

description: Raw data input file used for mixed models for male annual mating behaviour analysis.
DOI: 10.5061/dryad.fn2nt/1
title: Table S1 Individuals included in the study and number of reads per locus
DOI: 10.5061/dryad.fn2nt/2
title: Table S2 Primers used in the PCR amplification of each locus
DOI: 10.5061/dryad.fn2nt/3
title: *BEAST input file 12 loci random local clock

description: xml file for Figure 2
DOI: 10.5061/dryad.fn2nt/4
title: *BEAST species tree

description: *BEAST output (TreeAnnotator) from three identical analyses combined with LogCombiner (raw tree Fig. 2)
DOI: 10.5061/dryad.hm926/1
title: Multilocus genotypes of three-spined stickleback, Belgian-Dutch lowlands

description: Genotypes for 87 loci in four populations (L01, L02, L12, U01) of three-spined stickleback. The first and second column identify the population and the fish ID, respectively. Subsequent columns contain diploid genotype data (3+3 digits). Missing values are entered as 000000.
DOI: 10.5061/dryad.k867f/1
title: Phytree-original-data
DOI: 10.5061/dryad.kh7nt/1
title: Bacterioplankton decadal time-series

description: Bacterioplankton abundance, cell size and biomass for the RADIALES time-series of Xixón (Spain), soutthern Bay of Biscay (2002-2012)
DOI: 10.5061/dryad.kk504/1
title: Ecosystem services maps

description: The zipfile contains ArcGIS layerfiles and supporting files (ArcGIS 10) used to create ecosystem services maps for Rotterdam, the Netherlands. The first set of files compiles a map of ecosystem services totals at district level. The second set of files compiles a map of Rotterdam's main roads. The remaining file sets compile maps of six ecosystem services at neighbourhood level: air purification (AP), carbon storage (CS), cooling (C), noise reduction (NR), recreation (R), and runoff retention (RR). These are calculated using data of tree (t), woodland (w), tall shrub (ts), short shrub (ss), herbaceous (h), garden (g), water (wa), and other vegetation (o) cover. Detailed information about the methods used to compile these maps is available in the publication and supplementary material.
DOI: 10.5061/dryad.kp905/2
title: Simulated genetic data

description: Genetic marker data simulated under a stepping stone migration model and a tree-like migration model. See the attached ReadMe file for information regarding the used program, simulation settings, and data analysis.
DOI: 10.5061/dryad.pq075/1
title: File_full_sibs
DOI: 10.5061/dryad.pq075/2
title: File_half_sibs
DOI: 10.5061/dryad.pq075/3
title: File_LAR
DOI: 10.5061/dryad.ps837/6
title: Ulmus_minor_transcriptome

description: Sequences from full transcriptoma in Fasta format
DOI: 10.5061/dryad.ps837/7
title: Fungus_transcripts

description: 181 Unique transcripts that show homology with genome of inoculated organisms.
DOI: 10.5061/dryad.q1t7v/1
title: tpc00508-SupplementalDS1

description: Detailed Strain Histories
DOI: 10.5061/dryad.q1t7v/2
title: tpc00508-SupplementalDS2

description: SNV and Small InDel VCF File
DOI: 10.5061/dryad.q1t7v/3
title: tpc00508-SupplementalDS3

description: Structural Variant VCF File
DOI: 10.5061/dryad.q1t7v/4
title: tpc00508-SupplementalDS4

description: Pairwise SNVs for All Strains
DOI: 10.5061/dryad.rj15h/1
title: Population mean phenotypes for 19 conifer species compiled from 23 previous studies

description: This Excel file contains one sheet of metadata, and 23 spreadsheets of phenotypic data. Each spreadsheet of data includes results from one study for one species from one common garden. Data provided includes unique codes to identify each population, the latitude, longitude, elevation, mean annual temperature (C), and mean summer precipitation (in units of 100 mm), the number of families within population that were tested, and the total number of individuals that were tested. Phenotypic traits include height growth in varying units (see associated publication), the timing of spring phenological events in days relative to a reference date, and the timing of fall phenological events relative to a reference date.