cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20439837.v1
title: Data set for the research article " <strong>Intestinal Microbiome and Maternal Mental Health: Preventing Parenting Stress and Enhancing Resilience in Mothers</strong> "

description:     
We conducted two studies to examine the links between intestinal microbiota, physical condition, and psychological state in nonclinical, postpartum Japanese women.  
<br>
&gt;Study 1
Study 1 is part of a Japanese research project entitled <em>The Principle of Human Social Brain-Mind Development. </em>For this portion of the project, we analyzed data from 339 participants  (mean age, 34.66 ± 4.81 years; range, 21–47 years). No participants had any psychological or physical disorders. We collected the data between January and February 2021. For each participant, we obtained written informed consent and collected a stool sample, and then gave them four questionnaires to complete at home: PSI (parenting stress), Multidimensional Physical Scale (MDPS, physical condition), and Mykinso Pro (dietary and lifestyle habits). We also collected information on socioeconomic status. 
<br>
&gt;Study 2
Study 2 is part of the Japanese research project entitled <em>Investigation of the Interrelationship among Mental, Physical and Intestinal Microbiota in Postpartum Mothers and Their Infants</em>. For this study, we analyzed data from 27 first-time mothers within three to six months after childbirth (mean age = 33.63 years, <em>SD </em>= 4.18, range 27 to 41 years). All participants visited The Baby Laboratory at Kyoto University. 
Participants visited the lab twice. At the first visit, we collected the physical data and administered the questionnaires: the Japanese version of the Resilience Scale (RS25 and J-RS, psychological resilience) and the Center for Epidemiological Studies-Depression scale (CESD). The physical measurements used to assess physical composition and function were as follows: (1) BMI, body fat percentage, SMI, and extracellular water/total body water ratio (ECW/TBW) (InBody 770 multi-frequency bioelectrical impedance device, InBody Japan Inc., Tokyo); (2) grip strength of the dominant hand, which is considered to reflect the muscular strength of the whole body; (3) the two-step test for risk of the locomotive syndrome; a lower score indicates weak gait function including muscle strength, balance, and flexibility of the lower limbs; (4) normal and maximum gait speed for 5 m; lower gait speed score also indicates declining motor function in the lower limbs.
At the second visit, we collected saliva samples to measure oxytocin, collected three minutes of resting ECG data to assess the autonomic nervous system (i.e., cardiac sympathetic and cardiac vagal index; based on Toichi et al., 1997), administered the PSI, and collected information on age, years of education, and breastfeeding schedule. Although we asked the participants to visit twice within the same week if they could, the mean interval between the two visits was 7.74 days (<em>SD </em>= 8.19 days). To evaluate the intestinal microbiota, participants collected stool samples at home within two or three days after the second visit.
DOI: 10.17632/229bfk2d2b
title: Rathore et al. 2021 - MS Datasets

description: MS Monosome Results WT and Mtg1-KO Exp #1 and #2: Scaffold file contains masss-pectrometry results, from the analysis of sucrose gradient fractions containing mitochondrial monosome, from WT (YEAST_MONO_WT ) and Mtg1-ko (YEAST_MONO_MTG1) yeast strains. Mitochondria isolated from both strains were analyzed in two independet experiments. CL-MS Exp #1: raw data from the first crosslinking mass spectrometry experiment. Excell file contains: list of crosslinked peptides and list of all detected proteins. CL-MS Exp #2 : raw data from the second crosslinking mass spectrometry experiment. Excell file contains: list of crosslinked peptides and list of all detected proteins. Mtg1D manuscript-BioID: folder contains raw data of the BioID experiments.
DOI: 10.17632/rs2g777sws
title: Sovereign Debt and Economic Growth when Government is Myopic and Self-interested, by Acharya, Rajan and Shim, Journal of International Economics

description: Replication Code for Figures 2-6
DOI: 10.6084/m9.figshare.23172317.v1
title: Supplementary Material for: Diffuse infiltrating retinoblastoma with anterior chamber involvement: conservative management and identification of RB1 alterations in aqueous humor

description: Purpose: The aim of the study was to describe the successful conservative management of diffuse infiltrating retinoblastoma (DIR). Identification of RB1 pathogenic variant was done after cell-free DNA (cfDNA) analysis in aqueous humor. Methods: We conducted a retrospective case series. Results: We report 2 patients with unilateral, non-familial DIR with anterior and posterior involvement. Both patients underwent liquid biopsy for tumor cfDNA analysis on aqueous humor. Treatment consisted in combination of systemic and intra-arterial chemotherapy, with consecutive intracamerular and intravitreal injections of melphalan. One patient also required Iodine 125 brachytherapy. In both cases tumor cfDNA analysis revealed biallelic somatic alterations of the RB1 gene. These alterations were not found on germline DNA. Both patients retained their eyes and had a useful vision after a follow-up of 2 years. Conclusion: In selected cases, conservative management of DIR is safe and effective. Tumor cfDNA analysis in aqueous humor is an effective technique to disclose RB1 somatic alterations that guide the germline molecular explorations and improve genetic counselling after conservative treatment.
DOI: 10.17632/c79z6gz9rm
title: Development of Annotated Bangla Speech Corpora

description: This dataset contains Bangla read speech corpora which can be used for phonetic research and developing speech applications. Several criteria were maintained in the corpora development process that includes considering the phonetic and prosodic features during text selection. On the other hand, a specification was maintained in the recording phase as the speaking style is a vital part in speech applications. We also concentrated on proper text normalization, pronunciation, aligning, and labeling. The labeling was done manually – in the present endeavor sentence level labeling (annotation) was completed by maintaining a specification so that it could be expanded in future.
DOI: 10.6084/m9.figshare.12022551.v1
title: LiteratureReviewMastersThesis.xlsx

description: Excel sheet used to assist in conducting systematic literature reviews for my Master's Thesis
DOI: 10.6084/m9.figshare.22109414.v8
title: Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data

description: Although an essential step, the functional annotation of cells often proves particularly challenging in the analysis of single-cell transcriptional data. Several methods have been developed to accomplish this task. However, in most cases, these rely on techniques initially developed for bulk RNA sequencing or simply make use of marker genes identified from cell clustering followed by supervised annotation. To overcome these limitations and automatise the process, we have developed two novel methods, the single-cell gene set enrichment analysis (scGSEA) and the single cell mapper (scMAP). scGSEA combines latent data representations and gene set enrichment scores to detect coordinated gene activity at single-cell resolution. scMAP uses transfer learning techniques to repurpose and contextualise new cells into a reference cell atlas. Using both simulated and real datasets, we show that scGSEA effectively recapitulates recurrent patterns of pathways’ activity shared by cells from different experimental conditions. At the same time, we show that scMAP can reliably map and contextualise new single cell profiles on a breast cancer atlas we recently released. Both tools are provided in an effective and straightforward workflow providing a framework to determine cell function and significantly improve annotation and interpretation of scRNA-seq data.
DOI: 10.6084/m9.figshare.28536629.v2
title: SL_table_list_v3-030425.xlsx

description: Version 3This table summarizes all splice leader sequences I, and other contributors, could find in the literature. The doi and PMID of the reference where the sequences were found serves as reference.This is table will be updated with new sequences if they are made available. Contact me if you want to add data to this, a new column will be added to give credit the person giving the data.This table was done on my free time and can not be associated to any funding.
DOI: 10.6084/m9.figshare.28742087.v1
title: Raw Photos

description: Raw photographs of dorsal and profile view of Anna's Hummingbird.
DOI: 10.6084/m9.figshare.7021703.v1
title: Full data set from ENSO effects on the transpiration of eastern Amazon trees

description: Tree transpiration is important in the recycling of precipitation in the Amazon and might be negatively affected by El Niño–Southern Oscillation (ENSO)-induced droughts. To investigate the relative importance of soil moisture deficits versus increasing atmospheric demand (VPD) and determine if these drivers exert different controls over tree transpiration during the wet season versus the dry season (DS), we conducted sap flow measurements in a primary lowland tropical forest in eastern Amazon during the most extreme ENSO-induced drought (2015/2016) recorded in the Amazon. We also assessed whether trees occupying different canopy strata contribute equally to the overall stand transpiration (<i>T</i><sub>stand</sub>). Canopy trees were the primary source of <i>T</i><sub>stand</sub>. However, subcanopy trees are still important as they transpired an amount similar to other biomes around the globe. Tree water use was higher during the DS, indicating that during extreme drought trees did not reduce transpiration in response to low soil moisture. Photosynthetically active radiation and VPD exerted an overriding effect on water use patterns relative to soil moisture during extreme drought, indicating that light and atmospheric constraints play a critical role in controlling ecosystem fluxes of water. Our study highlights the importance of canopy and subcanopy trees to the regional water balance and highlights the resilience to droughts that these trees show during an extreme ENSO event.This article is part of a discussion meeting issue ‘The impact of the 2015/2016 El Niño on the terrestrial tropical carbon cycle: patterns, mechanisms and implications’.
DOI: 10.25378/janelia.12108957.v1
title: raw_data_imaging2_2.tar.gz

description: Two-photon imaging data for the following paper.<br><br>Generation of stable heading representations in diverse visual scenes<br>Sung Soo Kim+, Ann M. Hermundstad, Sandro Romani, L. F. Abbott, Vivek Jayaraman+<br>Nature (2019) 576:126-131<br><br>
DOI: 10.6084/m9.figshare.28675607.v2
title: <b>Causal relationships between Obesity, lipid specie and Sepsis: a two-step, two-sample Mendelian randomization study</b>

description: The study suggested a causal relationship between Obesity and Sepsis, which may be mediated by lipid species.
DOI: 10.6084/m9.figshare.12859838.v2
title: Syntaxonomical revision of the <i>Triseto flavescentis-Polygonion bistortae</i> alliance in the Carpathians

description: This phytosociological study of the Carpathian species-rich mesophilous mountain hay meadows (<i>Triseto flavescentis-Polygonion bistortae</i> alliance, <i>Molinio-Arrhenatheretea</i> class) presents the first unified large-scale classification system in four countries: Slovakia, Poland, Romania and Ukraine. The starting dataset contained relevés of the <i>Molinio-Arrhenatheretea</i>, <i>Mulgedio-Aconitetea</i> and <i>Nardetea strictae</i> classes. Numerical classification and semi-supervised classification by K-means method were used for the analyses. An electronic expert system and diagnostic species for grassland vegetation served for identification of <i>a priori</i> groups in K-means method. The final dataset contained 612 relevés. Altitude, climatic data and Ellenberg indicator values were used for ecological differentiation of syntaxa. The main gradients in floristic composition were analysed by Detrended Correspondence Analysis. Finally, the eight well-differentiated associations and one newly described association were determined: <i>Campanulo glomeratae-Geranietum sylvatici</i>, <i>Geranio sylvatici-Trisetetum flavescentis</i>, <i>Crepido mollis-Agrostietum capillaris</i>, <i>Geranio-Alchemilletum crinitae</i>, <i>Alchemillo-Deschampsietum caespitosae</i>, <i>Phyteumo (orbicularis)-Trifolietum pratensis</i>, <i>Astrantio-Trisetetum flavescentis</i>, <i>Trollio altissimi-Knautietum dipsacifoliae</i> and <i>Violo declinatae-Agrostietum capillaris</i> ass. nova. The differences in vegetation diversity of mountain hay meadows between particular countries were confirmed: <i>Alchemillo-Deschampsietum caespitosae</i> occurs in all studied territories, <i>Campanulo glomeratae-Geranietum sylvatici</i> occurs predominantly in Slovakia and the newly described association <i>Violo declinatae-Agrostietum capillaris</i> ass. nova could be found only in Ukraine.
DOI: 10.6084/m9.figshare.17190167.v2
title: Dados Fenologia - Dalbergia nigra.xlsx

description: Dados enológicos de 4 subpopulações de Dalbergia nigra, observados por 24 meses (julho de 2014-junho de 2016) no Recôncavo da Bahia (Mata Atlântica).Planilha contendo abas com informações das plantas marcadas (matrizes) e avaliadas (Altura das plantas, Altura do fuste, Diâmetro de copa, Diâmetro à altura do peito, Forma da Copa e do Tronco). Dados do ambiente (Fotoperíodo, Temperatura, Chuvas, Solos, Tipo de vegetação) e de variáveis fenógicas vegetativas (Brotação, Queda de Folhas) e reprodutivas (Botão Floral, Flores, Fruto Imaturo, Fruto Maduro e Dispersão de frutos maduros).
DOI: 10.6084/m9.figshare.21922215.v1
title: Supplementary Material for: Effects of a Sound Intervention on Physical and Emotional Well-Being in Patients with Cancer: A Prospective Randomized Trial

description: <b><i>Aim:</i></b> Cancer remains a disease with a significant impact on morbidity and mortality but also on quality of life. This prospective randomized pilot study investigated the effects of a sound intervention on physical and emotional well-being in outpatients with cancer. <b><i>Methods:</i></b> Two self-applied sound interventions were used for this purpose, either <i>active</i> “music playing” with a body monochord or <i>passive</i> sound intervention with headphones to listen to a given music compilation. Interventions were carried out over a period of 4 weeks for at least 15 min in the evening before bedtime. The following self-assessment questionnaires were completed both at baseline and after 4 weeks to evaluate the response: the Pittsburgh Sleep Quality Index (PSQI), the European Organization for Research and Treatment of Cancer (EORTC) Quality of Life Questionnaire (QLQ-C30), Visual Analogue Scale (VAS) for pain and fatigue, and the Fear of Progression (FoP) questionnaire. Primary endpoint of this exploratory trial was to describe the rate of patients with improvement in at least one dimension without worsening of any other. <b><i>Results:</i></b> 73 patients (29 male, 44 female) were included in the study and randomized to either <i>active</i> (<i>n</i> = 34, 47%) or <i>passive</i> sound intervention (<i>n</i> = 39, 53%). Median age was 52.0 years (range 21–79). Fourteen patients (19%) stated that they were musically active. The sound intervention was carried out on a median of 26 days (range 5–28). A higher percentage of patients in the passive group reached the primary endpoint: <i>n</i> = 15 (39%) versus <i>n</i> = 9 (27%). Response differences in favour of the passive group were seen with the VAS fatigue and with QLQ-30 questionnaires. Overall, an improvement in QLQ-30 questionnaire was seen in 12 patients (31%) in the passive group versus 3 patients (9%). Moreover, sound intervention significantly improved social functioning and shortness of breath in the passive group according to QLQ-C30. Significant improvements were also noticed in the passive group in terms of affective reactions as a domain of the FoP questionnaire. No effects on pain or sleep quality could be observed. <b><i>Conclusion:</i></b> A 4-week self-administered sound intervention was feasible in outpatients suffering from cancer. Using a panel of 5 questionnaires, passive sound interventions appeared to be more likely to positively influence patient-reported outcomes. In particular, a positive impact was documented in social functioning and fatigue.
DOI: 10.6084/m9.figshare.28120151.v1
title: Rodent Burrows Dataset

description: Rodent burrows dataset.
DOI: 10.6084/m9.figshare.28557035.v1
title: Occurrence data

description: Occurrence data
DOI: 10.6084/m9.figshare.29002499.v1
title: 1.9. Y Cronbach's Alpha Pre-test (Underlying Data) - Doomscrolling and Information Overload on Generation Z: Examining the Link Between Excessive Digital Media Consumption and Stress Level

description: Pre-test analysis Y variable (excessive digital media consumption) results using IBM SPSS Statistics 26 for research title "Doomscrolling and Information Overload on Generation Z: Examining the Link Between Excessive Digital Media Consumption and Stress Level".
DOI: 10.6084/m9.figshare.3519986.v1
title: Appendix C. The key habitat variables for the treatment groups.

description: The key habitat variables for the treatment groups.
DOI: 10.6084/m9.figshare.7054523.v1
title: Leptoxis ampla population genomics

description: These data include processed SNP data in various formats for Leptoxis ampla and shell photographs of L. ampla used for geometric morphometrics. Genetic data is presented in formats used for multiple analyses in the study (e.g., vcf), and some methods have data (genetic and locality) specific to a program used for analyses. Details about data generation can be found in the associated manuscript.
DOI: 10.17632/b8mc5byy7g
title: Multilevel assessment of restaurant profitability: Evidence with European data

description: Microeconomic data provided by Amadeus database, and contextual variables provided by World Tourism Organization, OECD, and Eurostat. Two measures of corporate profitability are considered in this dataset: Return on equity (ROE) and Return of assets (ROA). Additional financial indicators are included as control variables. Country heterogeneity may be checked using macroeconomic variables and tourism indicators.
DOI: 10.6084/m9.figshare.10301690.v1
title: Brennan_deMayo_et_al Acartia tonsa SNP table

description: Data from the manuscript: Loss of transcriptional plasticity but sustained adaptive capacity after adaptation to global change conditions in a marine copepod, Nature Communications, 2022. <br>Allele frequency data and statistics. Column ID’s indicate sample allele frequencies. AAAA = ambient line in ambient conditions; HHHH = greenhouse in greenhouse conditions; HHAA = ambient in greenhouse conditions; AAHH = greenhouse in ambient conditions. “pval” columns are from the CMH test. DAPC_contrib indicates the contribution score for each SNP to the DAPC loadings.<br>
DOI: 10.6084/m9.figshare.28400117.v1
title: Dataset for PLOS Global Public Health

description: During large-scale disasters, such as the anticipated Nankai Trough Earthquake, evacuees often sleep on cold, hard floors in public facilities like school classrooms and gymnasiums. This uncomfortable environment frequently leads to musculoskeletal pain and sleep disturbances. Although cardboard beds were used after the Great East Japan Earthquake, their stockpiling is not mandated, leaving emergency bedding supplies uncertain. Instead, municipalities stockpile plastic sheets in evacuation shelters in accordance with guidelines. However, these sheets are designed for stacking relief supplies—not for use as bedding—resulting in insufficient thermal insulation and inadequate body pressure dispersion.​ This study evaluated whether air cushions could serve as an effective alternative bedding solution. Air cushions are lightweight, cost-effective, and compact, and they may better alleviate concentrated body pressure and provide effective thermal insulation. A randomized controlled crossover trial was conducted with 20 healthy adults (aged 18–59). Each participant tested three surfaces—the air cushion, a urethane pad, and a plastic sheet—while lying in supine and lateral positions. Objective assessments included measurements of mean body pressure and contact contour area, while subjective evaluations of firmness and comfort were obtained via a numeric rating scale. Additionally, thermal insulation was assessed by recording surface temperature changes after a 10-minute contact with an ice pack (~0°C). Results showed that the air cushion reduced average body pressure by over 20% and increased contact area by more than 30% compared to the plastic sheet, outperforming the urethane pad. Participants also rated the air cushion as significantly more comfortable. The air cushion’s surface temperature remained comparable to that of the urethane pad, indicating adequate insulation. These findings suggest that air cushions are a promising alternative bedding option in evacuation shelters.
DOI: 10.6084/m9.figshare.7686557.v1
title: MOESM2 of Quantitative proteomic characterization of lung tissue in idiopathic pulmonary fibrosis

description: Additional file 2. Differentially expressed proteins.
DOI: 10.17632/xzkd2j5zdw
title: SENS school

description: This dataset contains information gathered as part of a study evaluating the effectiveness of the "Le sens de l’école" (The Meaning of School) program, aimed at strengthening academic perseverance and improving student engagement in the educational system. The data were collected from CM1 and CM2 students (aged 9 to 11 years) from ten schools in Île-de-France, including schools within Priority Education Networks (Réseau d’Éducation Prioritaire, REP). The dataset includes quantitative data derived from questionnaires administered before and after the workshops, measuring academic motivation, satisfaction, mindset (growth mindset), and classroom climate. Supplementary materials contain the interview guide used to collect qualitative data.
DOI: 10.6084/m9.figshare.11368851.v1
title: supplemental data AJP-renal.pdf

description: <b>S1. </b>V-ATPase E1 subunit (red, arrows) expression to localize ICs and Aqp2 (green) expression to localize collecting ducts. WT<sup>kidney&gt;</sup>WT<sup>recipient </sup>kidneys (<b>A</b>) appeared to have similar number of intercalated cells (red cells, arrows) compared to WT native kidneys (<b>B</b>). <i>Car2<sup>-/-</sup></i><sup>kidney&gt;</sup>WT<sup>recipient </sup>kidneys (<b>C)</b>appeared to have similarly diminished numbers of ICs (red cells, arrows) compared to <i>Car2</i><sup>-/-</sup>native kidneys (<b>D</b>). On A, the cells were stained with the inverse secondary colored and were pseudocolored red or green for consistency with the other images. <b></b> <b><br></b><b>S2. </b>Transplant hydronephrosis in excluded mouse<b></b><b> </b><b><br></b><b>S3. </b>Murine<b></b>VCUG demonstrating no vesicoureteral reflux status post renal transplant <b><br></b><b>S4</b>. Complete results of RT<sup>2 </sup>Profiler Bacterial Response PCR Arrays evaluating acetazolamide vs. no acetazolamide in the kidney at baseline. <b><br></b><b>S5</b>. Complete results of RT<sup>2 </sup>Profiler Bacterial Response PCR Arrays evaluating acetazolamide vs. no acetazolamide in the kidney during UTI at 6-hrs post transurethral UPEC inoculation. <b><br></b><b>S6</b>. Primer sequences for RT-PCR.
DOI: 10.6084/m9.figshare.20280246.v1
title: Wildlife Photos on Social Media: a quantitative content analysis of Conservation Organisations’ Instagram images

description: Accompanying dataset for Wildlife Photos on Social Media: a quantitative content analysis of Conservation Organisations’ Instagram images in Animals.
DOI: 10.6084/m9.figshare.23826747.v1
title: Pickeringetal._White-tailedDeerPopulationEstimates_1874-2022.csv

description: White-tailed deer estimates data from Long Point, Ontario, Canada.