cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pd959/10
title: RpartitionItero.R

description: Code to generate Figs. 1, 22, and 23
DOI: 10.5061/dryad.pd959/11
title: RpartitionSemel.R

description: Code to generate Figs. 2 and 24
DOI: 10.5061/dryad.pd959/4
title: IdahoIPMFunctions.R

description: Defines functions needed by IdahoIPMLifeCycleStats.R and IdahoWinnerTraits2Plots.R
DOI: 10.5061/dryad.pd959/5
title: IdahoIPMLifeCycleStats.R

description: Code to generate Figs. 5 and 6
DOI: 10.5061/dryad.pd959/6
title: IdahoWinnerTraits2Plots.R

description: Code to generate Figs. 7 and 8
DOI: 10.5061/dryad.pd959/7
title: KittiwakeMatrices.R

description: Data used by KittiwakeWinnerTraitsFecSurv3.R.  Demographic data are taken from Steiner, U. K., S. Tuljapurkar, and S. H. Orzack. 2010. Dynamic heterogeneity and life history variability in the kittiwake. Journal of Animal Ecology 79:436–444 and Cam, E., W. A. Link, E. G. Cooch, J.-Y. Monnat, and E. Danchin. 2002. Individual covariation in
life-history traits: seeing the trees despite the forest. The American Naturalist 159:96–105.
DOI: 10.5061/dryad.pd959/8
title: KittiwakeWinnerTraitsFecSurv3.R

description: Code for generating Fig. 4
DOI: 10.5061/dryad.pd959/9
title: MegamatrixFunctions.R

description: Defines functions needed by KittiwakeWinnerTraitsFecSurv3.R and SizeQualityVarPartition.R
DOI: 10.5061/dryad.qn7d3/1
title: Supplementary 1

description: Information on the substructure search performed in PubChem to obtain the PA dataset
DOI: 10.5061/dryad.qn7d3/2
title: Supplementary 2

description: Applicability domain of the DILI and the PA dataset, showing the four first principal components (PC1 – PC4)
DOI: 10.5061/dryad.sg2d3/1
title: The data of all the figures
DOI: 10.5061/dryad.tb3d0/1
title: Full Data Set

description: Full data set (experiments 1, 2 and 3)
DOI: 10.5061/dryad.1m207/3
title: 01_Spitzenetal2017_Juvenile_data

description: yearly counts of juveniles per site
DOI: 10.5061/dryad.1m207/4
title: 02_Spitzenetal2017_CMR_data

description: 1st datasheet: CMR data for all dates including the mean minumum temperature for the week prior to survey. 0 = not seen, 1 = seen but clean, values = Bd GE/swab. RUnumbers are all individual toads. 2nd datasheet gives the body condition per individual toad (RUnrs) upon capture. In both sheets the last columns provide information on gender/age and site.
DOI: 10.5061/dryad.2vm47/2
title: Figure 3 Raw data

description: Spectral radiance of the starry sky recorded under different atmospheric conditions.
DOI: 10.5061/dryad.2vm47/3
title: Figure S2 Raw data

description: Spectral radiance recorded in planetaria displaying conditions from Dacke et al 2013.
DOI: 10.5061/dryad.3bv80/1
title: DRYAD-STLE-analysis

description: Data files and scripts for all analyses and figures in Maddamsetti and Lenski (2018).
DOI: 10.5061/dryad.3h207/1
title: A micromammalian fauna from a Byzantine columbarium Near Be'er Sheva, Israel (text in Hebrew)

description: This is a short report describing an assemblage of micromammalian remains retrieved from a Byzantine period structure in the Negev region of Israel. It includes a short preliminary text (in Hebrew), two figures and a table. A table of taxonomic composition with Latin scientific names of taxa is included. The same file is also available for download in English.
DOI: 10.5061/dryad.3h207/2
title: A micromammalian fauna from a Byzantine columbarium Near Be'er Sheva, Israel (text in English)

description: This is a short report describing an assemblage of micromammalian remains retrieved from a Byzantine period structure in the Negev region of Israel. It includes a short preliminary text (in English), two figures and a table. A table of taxonomic composition with Latin scientific names of taxa is included. The same file is also available for download in Hebrew.
DOI: 10.5061/dryad.40r6p/3
title: FEpap_dryad3
DOI: 10.5061/dryad.51482/1
title: Plant_Data_Grinath_et_al_2018_JoE

description: Plant cover data from 2009 to 2014 at the Carrizo Plain, California. The data are from 1 meter square quadrats within an experiment assessing the effects of kangaroo rat foraging and burrowing on plants. Plant litter cover and residual aboveground biomass are also included in this data file.
DOI: 10.5061/dryad.5k54f/4
title: Raw sequences (forward reads) first part

description: First part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.5k54f/5
title: FFL6_S1_L001_R1_001.fastq.gz part 2

description: Second part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.5k54f/6
title: FFL6_S1_L001_R1_001.fastq.gz part3

description: Third part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.5k54f/7
title: FFL6_S1_L001_R1_001.fastq.gz part 4

description: Fourth part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.5k54f/8
title: FFL6_S1_L001_R2_001.fastq.gz part1

description: First part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.7f138/1
title: EYT_HTP_GS

description: Zip file containing raw data, scripts, and intermediate processing files for the publication Combining High-Throughput Phenotyping and Genomic Information to Increase Prediction and Selection Accuracy in Wheat Breeding.  A README file is included in the main directory that provides additional information.
DOI: 10.5061/dryad.7n77q/3
title: Mean Census Dates for 200 litter traps located on Barro Colorado Island, Panama.

description: CensusMeanDates.txt holds three variables. The variable "census" is an integer representing a weekly census of 200 litter traps. The variable "date.mean" is the average date the 200 traps were visited in YYYY-MM-DD HH:MM:SS format. The variable "ndays" is the same average date expressed as the integer number of days since 1 January 1980.
DOI: 10.5061/dryad.7n77q/4
title: Median_First_Census

description: The file Median_First_Census.txt holds three variables. The variable "sp" is a four-letter mnemonic that represents one of the 19 study species. The variable "yr" is the calendar year of flowering. The variable "census" is the median first census flowers were recorded for the species and year.
DOI: 10.5061/dryad.7n77q/5
title: R scripts used to complete analyses.

description: The file "Rscripts.zip" holds seven R scripts used to complete analyses of median first flowering censuses for 19 species on Barro Colorado Island, Panama. Each R script includes extensive documentation. It should be possible to run these scripts after placing the files Daily_Rainfall.txt, Daily_Solar_Radiation.txt, CensusMeanDates.txt and Median_First_Census.txt in a directory and updating the setwd() commands. The R scripts will save several gigabytes of new files to the same directory.
DOI: 10.5061/dryad.832rg.1
title: Data from: Variation in population structure and dynamics of montane forest tree species in Ethiopia guide priorities for conservation and research
DOI: 10.5061/dryad.832rg.1/1.1
title: YoungEtAl_VarPopStruMonTreeSppEthiopia_AllData

description: This document is an excel file with four separate worksheets each representing one forest location (i.e., Adelle, Demaro, Odo bulu, and Rira). Each worksheet has the basal area factor prism value used to collect the data (20) as well as the number of prism plots collected at each specific location. Each record represents an individual tree. The columns in each worksheet include Date, Plot #, Subplot, tree #, and species. Date provides the date the data were collected, Plot# list the plot name of the tree measured. Subplot is one of the five subplots associated with each plot representing C (center), N(North), W (West), S(South), and E(East). Tree # lists tree number specific to each subplot. Species lists the species name as a two letter code representing the first two letters of the scientific name (include genus and species). Finally, dhb (cm) includes the diameter at breast height for each tree species in centimeters
DOI: 10.5061/dryad.832rg.2
title: Data from: Variation in population structure and dynamics of montane forest tree species in Ethiopia guide priorities for conservation and research
DOI: 10.5061/dryad.832rg.2/1.2
title: YoungEtAl_VarPopStruMonTreeSppEthiopia_AllData

description: This document is an excel file with four separate worksheets each representing one forest location (i.e., Adelle, Demaro, Odo bulu, and Rira). Each worksheet has the basal area factor prism value used to collect the data (20) as well as the number of prism plots collected at each specific location. Each record represents an individual tree. The columns in each worksheet include Date, Plot #, Subplot, tree #, and species. Date provides the date the data were collected, Plot# list the plot name of the tree measured. Subplot is one of the five subplots associated with each plot representing C (center), N(North), W (West), S(South), and E(East). Tree # lists tree number specific to each subplot. Species lists the species name as a two letter code representing the first two letters of the scientific name (include genus and species). Finally, dhb (cm) includes the diameter at breast height for each tree species in centimeters
DOI: 10.5061/dryad.832rg.2/2.2
title: Systematic review of montane tree species in Ethiopia

description: Systematic review of tree species found in the current study that were conducted in Ethiopia and presented population structure information. This information includes population structure classification, study site names, study site characteristics, and disturbance types for Bale Mountain montane tree species and related studies found across Ethiopia.
DOI: 10.5061/dryad.832rg/2
title: Systematic review of montane tree species in Ethiopia

description: Systematic review of tree species found in the current study that were conducted in Ethiopia and presented population structure information. This information includes population structure classification, study site names, study site characteristics, and disturbance types for Bale Mountain montane tree species and related studies found across Ethiopia.
DOI: 10.5061/dryad.8jr73/1
title: Waller_AJB_Data

description: Data from the greenhouse experiment. All data were collected by the authors.
DOI: 10.5061/dryad.8jr73/2
title: Waller_AJB_Rcode

description: R code to conduct analyses presented in the paper.
DOI: 10.5061/dryad.cp40s/1
title: Pciris_mtDNA_ND2

description: ND2 sequence alignment in phylip format
DOI: 10.5061/dryad.cp40s/10
title: Pciris_reads_5of6

description: 100bp SR sequence reads from an illumina Hiseq 2500 for Passerina ciris. Library prepped via ddRAD protocol with enzymes sbf1 and msp1. Reads were demultiplexed in pyrad v 3-0-65 (command "pyrad -p params.txt -s 1") but have had no other processing.
DOI: 10.5061/dryad.cp40s/2
title: R_scripts

description: R scripts used for multivariate genomic analysis, mtDNA analysis, morphology, dadi data preparation, dadi model to demographic value conversion, and all figures.
DOI: 10.5061/dryad.cp40s/3
title: specimen_data

description: Museum and band numbers for specimens analyzed in this study, plus wing length and tarsus measurements for interior samples.
DOI: 10.5061/dryad.cp40s/4
title: ddRAD_assembly

description: ddRAD sequence assembly in vcf and structure format, and pyRAD sequence assembly parameters file.
DOI: 10.5061/dryad.cp40s/5
title: dadi

description: demographic analysis (dadi) python scripts and dadi-formatted input file.
DOI: 10.5061/dryad.cp40s/6
title: Pciris_reads_1of6

description: 100bp SR sequence reads from an illumina Hiseq 2500 for Passerina ciris. Library prepped via ddRAD protocol with enzymes sbf1 and msp1. Reads were demultiplexed in pyrad v 3-0-65 (command "pyrad -p params.txt -s 1") but have had no other processing.
DOI: 10.5061/dryad.cp40s/7
title: Pciris_reads_2of6

description: 100bp SR sequence reads from an illumina Hiseq 2500 for Passerina ciris. Library prepped via ddRAD protocol with enzymes sbf1 and msp1. Reads were demultiplexed in pyrad v 3-0-65 (command "pyrad -p params.txt -s 1") but have had no other processing.
DOI: 10.5061/dryad.cp40s/8
title: Pciris_reads_3of6

description: 100bp SR sequence reads from an illumina Hiseq 2500 for Passerina ciris. Library prepped via ddRAD protocol with enzymes sbf1 and msp1. Reads were demultiplexed in pyrad v 3-0-65 (command "pyrad -p params.txt -s 1") but have had no other processing.
DOI: 10.5061/dryad.d69k7/1
title: Data_DendroQuebecNFI_SignalAnalysis

description: Regional and reference chronologies, forest land classification, annual temperature and precipitation data.
DOI: 10.5061/dryad.f7t62/1
title: Genotyping Data of the Myroxylon peruiferum

description: Genotyping data of the mating system and seedlings of an overexploited Neotropical tree. We fist assessed the mating system of Myroxylon peruiferum in a forest remnant population found in the Caetetus Ecological Station, São Paulo State, southeastern Brazil. We further selected four forest nurseries that supply seedlings to restoration in the municipalities of Penápolis, Capão Bonito, Socorro and Ibaté.
We used any abbreviations: COD – individual code; FAMLAB – family label; and NURLAB – nursery label.
DOI: 10.5061/dryad.g335f/1
title: Datasets for protein, mRNA, and microRNA

description: The file contains four datasets. Three with differentially expressed protein, mRNA, and microRNA, respectively. The last dataset contain data on all proteins detected in all TMT sets. Information about the sample names is included in the readme file.
DOI: 10.5061/dryad.hg686/1
title: Clemente-et-al_Data_BEHECO-2017-0362

description: Excel file with 10 datasets corresponding to the analysis presented and described in the manuscript. A legend is provided.
DOI: 10.5061/dryad.kc7h9/1
title: trnL data set

description: This file contains trnL data with metadata. The trnL data have been processed as described in Metcalf et al. 2017.
DOI: 10.5061/dryad.kc7h9/2
title: Diet.Matrix.taxonomy

description: Taxonomy strings assigned to trnL sequences. Taxonomy could not be assigned to most sequences.
DOI: 10.5061/dryad.m5548/1
title: Cartesian coordinates for stable isomers of MAu16–clusters
DOI: 10.5061/dryad.ng788/1
title: Raw_data
DOI: 10.5061/dryad.p4q04/10
title: PET DICOM part 7
DOI: 10.5061/dryad.p4q04/11
title: PET DICOM part 8
DOI: 10.5061/dryad.p4q04/12
title: PET DICOM part 9
DOI: 10.5061/dryad.p4q04/13
title: PET DICOM part 10
DOI: 10.5061/dryad.p4q04/14
title: PET DICOM part 11
DOI: 10.5061/dryad.p4q04/16
title: PET DICOM part 13
DOI: 10.5061/dryad.p4q04/17
title: PET DICOM part 14
DOI: 10.5061/dryad.p4q04/18
title: PET DICOM part 15
DOI: 10.5061/dryad.p4q04/8
title: PET DICOM part 5
DOI: 10.5061/dryad.p4q04/9
title: PET DICOM part 6
DOI: 10.5061/dryad.pd959/12
title: SeedlingSurvPars.csv

description: Data needed by IdahoIPMFunctions.R
DOI: 10.5061/dryad.pd959/13
title: SimplePartitionSimulate.R

description: Code to generate Fig. 21
DOI: 10.5061/dryad.pd959/14
title: SizeQualityFunctions.R

description: Defines functions needed by SizeQualityFunctionsPlot.R and SizeQualityVarPartition.R
DOI: 10.5061/dryad.pd959/15
title: SizeQualityFunctionsPlot.R

description: Code to generate Figs. 9--13
DOI: 10.5061/dryad.pd959/16
title: SizeQualityVarPartition.R

description: Code to generate Figs. 10--13
DOI: 10.5061/dryad.pd959/17
title: Standard Graphical Pars.R

description: Defines functions needed by IdahoIPMLifeCycleStats.R, IdahoWinnerTraits2Plots.R, KittiwakeWinnerTraitsFecSurv3.R, SizeQualityFunctionsPlot.R, and SizeQualityVarPartition.R
DOI: 10.5061/dryad.pd959/18
title: SurvPars.csv

description: Data needed by IdahoIPMFunctions.R
DOI: 10.5061/dryad.pd959/19
title: TwoStageWinnerTraits2Plots.R

description: Code to generate Fig. 3
DOI: 10.5061/dryad.pd959/20
title: Utilities.R

description: Defines functions needed by IdahoIPMLifeCycleStats.R, IdahoWinnerTraits2Plots.R, KittiwakeWinnerTraitsFecSurv3.R, SizeQualityFunctionsPlot.R, and SizeQualityVarPartition.R
DOI: 10.5061/dryad.pr498/1
title: Data （2017-9-23）

description: Papilla number and length in 14 specimens of Macromitrium longipapillosum and M. comatum, showing a discontinuous papilla variation pattern between the two species
DOI: 10.5061/dryad.qg78q/1
title: Fugere et al 2018 Funct Ecol data

description: File includes all data used in linked publication, namely data on: stream water temperature (diel trends and time series), growth and metabolic rates in the lab temperature acclimation experiment, body size measurements for the field mark-recapture study, and invertebrate abundance and biomass data used in the bioenergetics model. The last sheet also includes results of said energetics model.
DOI: 10.5061/dryad.rv0nv/1
title: Supplementary Table 1

description: Transcriptional changes that are induced following treatment with AR156 or flg22 in Arabidopsis thaliana.
DOI: 10.5061/dryad.rv0nv/2
title: Supplementary Table 2

description: List of 1302 differentially expressed genes(DEGs) in AR156 and flg22 treatments in Arabidopsis thaliana.
DOI: 10.5061/dryad.rv0nv/3
title: Supplementary Table 3

description: Overview of all 15 KEGG pathways
DOI: 10.5061/dryad.t175g/1
title: Numerical data for Fig. 2.

description: Densities of spruce budworm (numbers per 1 m2 of branch surface area) in Plot 1 of: (A) postdiapause larvae, pupae, and pupal exuviae: (B) eggs. Year is calendar year
DOI: 10.5061/dryad.t175g/2
title: Numerical data for Fig. 3.

description: Densities of spruce budworm (numbers per 1 m2 of branch surface area) in Plots 2 and 3 of: (A) postdiapause larvae, pupae, and pupal exuviae: (B) eggs. Year is calendar year and Date, ordinal date.
DOI: 10.5061/dryad.t175g/3
title: Numerical data for the solid-circle series in Fig. 11.

description: Realization of survivorship (% of the initial cohort) in laboratory rearing of postdiapause spruce budworm samples from Plot 1. Year is calender year and Date, ordinal date.
DOI: 10.5061/dryad.t175g/4
title: Numerical data for the solid-circle series in Fig. 12.

description: Realization of survivorship (% of the initial cohort) in laboratory rearing of postdiapause spruce budworm samples from Plots  2 and 3. Year is calender year and Date, ordinal date.
DOI: 10.5061/dryad.t175g/5
title: Numerical data for parasitism and disease in Fig. 15.

description: Numerical data for parasitism and disease in Fig. 15.
DOI: 10.5061/dryad.t7r64/1
title: Files obtained from RNA-seq analyses

description: Transcript sequence, orthologous group and differential expression files obtained from analysis of RNA-seq data.
DOI: 10.5061/dryad.tv138/1
title: Data used in analysis of Common Drug Review and pan-Canadian Oncology Review recommendations

description: List of  indications, funding recommendations and drug review pathways for all drugs considered in this study.
DOI: 10.5061/dryad.vj041/1
title: Putman-Scanlan_RawData

description: Fish were tested in one of three magnetic treatments. Each column represents results for a given treatment.  Each cell represents the height a single fish swam within 30 minutes of being placed at the bottom of a marble-filled tube (0= bottom, 9 =top). Spacing is at 2.5 cm intervals. Each fish was tested only once and only in one treatment.
DOI: 10.5061/dryad.11m62/1
title: Behavioural and metabolic data

description: Ethovision files contain video and analysis of experiments. Loggerpro files contain metabolic data including O2, CO2 and flow readings. Files are separated into hypoxia (video + metabolism) and anoxia (metabolism) data.
DOI: 10.5061/dryad.1311t/1
title: NUTRIVEGE Study_PhotoFrequencies
DOI: 10.5061/dryad.1jg00/1
title: Blue tit physiological/biometric data, plus environmental parameters at time of collection

description: Collected in the field. Microsoft Excel OpenXML file.
DOI: 10.5061/dryad.1q778/1
title: indica reference japonica query genome alignment result in BED format

description: BED format genome alignment results where indica 93-11 was used as reference and japonica nipponbare genome was used as query genome. Indica chromosome was named as SAI.chromosome_number and japonica chromosome named as SAJ.chromosome_number.
DOI: 10.5061/dryad.1q778/2
title: japonica reference indica query genome alignment result in BED format

description: BED format genome alignment results where japonica nipponbare was used as reference and indica 93-11 was used as query genome. Indica chromosome was named as SAI.chromosome_number and japonica chromosome named as SAJ.chromosome_number.
DOI: 10.5061/dryad.1q778/3
title: japonica genome LTR-RT and nearby host gene and the host genes' expression values
DOI: 10.5061/dryad.2s2g2/1
title: Statistical data of Ca2+ release events
DOI: 10.5061/dryad.41r85/1
title: eSnail: a transcriptome-based molecular resource of the central nervous system for terrestrial gastropods

description: In the zip file, we provided assembled contig files, protein sequences, annotation and single nucleotide polymorphism for six terrestrial gastropods: Cochlicella acuta, Helix aspersa,  Deroceras invadens, Deroceras reticulatum, Lehmannia nyctelia, and Milax gagates.
DOI: 10.5061/dryad.44tt0/1
title: MADA v.1
DOI: 10.5061/dryad.4gv44/1
title: ResistanceDLDP_1.1.tar

description: R package source to define functions for the simulation of resistance evolution.
DOI: 10.5061/dryad.4gv44/2
title: how_to_run_simulation

description: Procedures to run the simulation of the resistance evolution and draw plots (Figure 2, 3 and 4 on the article) on your R environment. Installation of "ResistanceDLDP" package is required.
DOI: 10.5061/dryad.51482/2
title: Rodent_Data_Grinath_et_al_2018_JoE

description: Rodent abundances per hectare from 2007 to 2014 at the Carrizo Plain, California.
DOI: 10.5061/dryad.57m0f/1
title: VCF file for 6605 SNPs used in gene-environment association analyses

description: The file Harrisson_etal_MurrayCod_6605_loci is a VCF formatted file that includes genotypes (6605 SNP loci) for 230 individuals of Maccullochella peelii used in the study by Harrisson et al "Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity" Contact Katherine Harrisson: katherine.harrisson@gmail.com
DOI: 10.5061/dryad.57nr2/1
title: Dataset for calculation of habitat used and behaviour of foraging black-legged kittiwakes

description: This data set contains a copy of the main data file exactly as used for this paper. The data was used to analyse habitat selection and behaviour in the foraging habitat by chick-rearing black-legged kittiwakes. This data file was made in txt, with semicolon used as separator. Please feel free to contact me if you have suggestions, find errors, inconsistencies, or any other bug in the file. As well, please let me know about your uses of this data.
DOI: 10.5061/dryad.5k54f/10
title: FFL6_S1_L001_R2_001.fastq.gz part3

description: Third part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.5k54f/11
title: FFL6_S1_L001_R2_001.fastq.gz part4

description: Fourth part of the bzip-compressed fastq-file containing raw sequences (reverse reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).