cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25921/wcbz-8383
title: SPLASH Field Study; NOAA PSL thermodynamic profiles retrieved from ASSIST infrared radiances with the optimal estimation physical retrieval TROPoe (NCEI Accession 0303808)

description: This dataset contains daily files with thermodynamic profiles retrieved with the optimal estimation physical retrieval TROPoe (TROPoe, Turner and Löhnert 2014; Turner and Blumberg 2019; Turner and Löhnert 2021). The profiles are retrieved every 10 min from instantaneous radiances observed with an Atmospheric Sounder Spectrometer by Infrared Spectral Technology (ASSIST, Rochette et al. 2009).

The ASSIST was deployed at Roaring Judy in the East River Watershed in Colorado (38.7169321 N, 106.853031 W, 2494 m above mean sea level) from 21 October 2021 to 28 January 2022 as part of the National Oceanic and Atmospheric Administration (NOAA) Study of Precipitation, the Lower Atmosphere, and Surface for Hydrometeorology (SPLASH) campaign.

The spectral bands used in the retrieval are in the wavenumber range from 612 - 905.4 cm-1 and are specified in Turner and Löhnert (2021). Additional input data in TROPoe are cloud base height from a collocated ceilometer, temperature, water vapor mixing ratio, and pressure from colocated near-surface measurements and from hourly analysis profiles from the operational Rapid Refresh (RAP, Benjamin et al. 2021) weather prediction model at the closest grid point. The latter are used only outside the atmospheric boundary layer (ABL) above 4 km above ground level (AGL) and provide information in the middle and upper troposphere where little to no information content is available from the infrared radiances.

In addition to these temporally resolved input data, TROPoe requires an a priori dataset (prior) which provides mean climatological estimates of thermodynamic profiles and specifies how temperature and humidity covary with height as an input (for details see e.g. Djalalova et al. 2022). The prior is a key component of the retrieval and provides a constraint on the ill-posed inversion problem. For this study, we computed the prior from operational radiosondes launched near Denver, CO, and re-centered the mean profiles of water vapor and temperature to account for the elevation difference between the East River Valley and the launch site near Denver to get a more representative prior.

The file format is netcdf and the file naming conventions are

NOAA_PSL_ASSIST_RoaringJudy_yyyymmdd.cdf

with

yyyy: Year

mm: Month

dd: Day

The time stamp of all data is in UTC.

Note that the vertical resolution of the retrieved profiles decreases with height, because of the broadening of the weighting function as a function of height. Thus, there are relatively few independent pieces of information in the profiles, this is reflected in the cumulative degree of freedom variables. The majority of the information from the ASSIST is in the lowest 2-3 km, above that most information comes from the RAP model.

Because of strong emission in the infrared from clouds, clouds strongly impact the ability to retrieve profiles from the ASSIST and care should be taken when analyzing the retrievals in the presence of clouds.
DOI: 10.15468/dl.5mqk44
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Chamaedorea costaricana",
 "Year 1000-2024"
 ]
}

 The dataset includes 79 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007620-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/mr72-de05
title: Cetacean visual observations, samples and environmental parameters collected onboard the NOAA Ship Gordon Gunter (GU) in the Gulf of America (formerly U.S. Gulf of Mexico) from 2009-06-13 to 2009-08-12 (survey GU0903) (NCEI Accession 0304467)

description: The Southeast Fisheries Science Center (SEFSC) conducted a shipboard survey in the Gulf of America (formerly U.S. waters of the Gulf of Mexico) from approximately the 200m isobath out to the U.S. Exclusive Economic Zone (EEZ) from Key West, FL to the U.S.-Mexico border. The survey was conducted between June 10, 2009 and August 13, 2009 onboard the NOAA Ship Gordon Gunter. A visual line-transect and passive acoustic survey was conducted to estimate the abundance and spatial distribution of marine mammals in U.S. oceanic waters. A second objective of the survey was to conduct a pilot study to characterize sperm whale prey using fisheries acoustics equipment and a mid-water trawl.

This dataset includes marine mammal visual observation data and effort points with surveying conditions that can be used in abundance and density modeling per visual line-transect survey protocols. This dataset also includes opportunistic marine mammal photographs and non-marine mammal sightings such as sea turtles. Trawl catch data and associated photographs are also provided. Environmental data collected via Conductivity, Temperature, Depth (CTD) sensor and expendable bathythermographs (XBT) are also included.
DOI: 10.25921/9b8j-zn57
title: NOAA RESTORE Science Program: Gulf-wide assessment of habitat use and habitat-specific production estimates of nekton in turtlegrass (Thalassia testudinum): Nekton and primary producer stable isotopes in turtlegrass-dominated seagrass beds in the northern Gulf of America, 2018-05-23 to 2018-10-03 (NCEI Accession 0304846)

description: This dataset consists of stable isotope data from turtlegrass-dominated seagrass beds of the northern Gulf of America (formally the Gulf of Mexico), including Lower Laguna Madre, TX; Coastal Bend, TX; Chandeleur Islands, LA; St. George Sound, FL; Cedar Key, FL, and Charlotte Harbor, FL. Data are in spreadsheet format.
DOI: 10.1594/pangaea.986428
title: Nutrients measurements from METEOR cruise M76/2 in the Benguela Upwelling System off Namibia in May 2008

description: Water samples were taken with a conductivity-temperature-depth (CTD)/rosette sampler and were filtered over precombusted GF/F Filters onboard. Filtrates were stored frozen in acid-washed polypropylene bottles for nutrient and nitrate isotope analysis. Nutrient concentrations of samples were measured with a Bran & Luebbe SCALAR autoanalyzer in the home laboratory in Hamburg applying standard methods. The method for stable isotope composition of nitrate is described in Nagel et al., 2013.
DOI: 10.1594/pangaea.986133
title: Suspended matter from METEOR cruise M76/2 in the Benguela Upwelling System off Namibia in May 2008

description: Samples were taken with a CTD/Rosette sampler to analyse suspended particulate matter (SPM) and its composition at different water depths. The water samples were filtered using a filtration system consisting of five simultaneous filtration devices, two water pumps and a waste container. Suspended material was collected on pre-weighted and pre-combusted GF/F-filters (ø 47 mm) and dried in an oven at 40°C for at least two days. The total amount of material in each sample was estimated using the volume of water filtered and final weight of dried material. Total particulate nitrogen (TPN), total carbon (TC), particulate organic carbon (POC) were quantified by elemental analysis (Thermo Flash EA 1112). Homogenized samples were weighed into silver capsules and inorganic carbon was removed by adding 1 M HCl suprapur prior to analyses. All data are given in weight%. The method for stable N- isotope composition of TPN is described in Nagel et al., 2013.
DOI: 10.25921/tew2-ej83
title: NOAA RESTORE Science Program: Gulf-wide assessment of habitat use and habitat-specific production estimates of nekton in turtlegrass (Thalassia testudinum): Blue crab growth and mortality rates, 2018-05-14 to 2018-09-14 (NCEI Accession 0305475)

description: This dataset consists of blue crab growth and mortality data from caging and tethering experiments in turtlegrass-dominated seagrass beds of the northern Gulf of America, including Lower Laguna Madre, TX; Coastal Bend, TX; Chandeleur Islands, LA; St. George Sound, FL; Cedar Key, FL, and Charlotte Harbor, FL.
DOI: 10.1594/pangaea.986429
title: Sediment core analysis from METEOR cruise M76/2 in the Benguela Upwelling System off Namibia in May 2008

description: Short sediment cores were obtained by a multicorer (Oktopus Kiel) equipped with acrylic tubes (PMMA) with an inner diameter of 10 cm and a length of 60 cm. Sediment slices of 1 cm thickness were cut upon extrusion and stored frozen until analysis in the home laboratory. The frozen sediment slices were freeze-dried and the resulting weight loss was used to calculate the liquid water content (LWC). A subsample of the homogenized dry residues was used to determine the concentrations of total nitrogen (TN), total carbon (TC) and organic carbon (TOC, after removal of inorganic carbon by adding 1 M HCl suprapur to pre-weighed samples in silver capsules) with an Elemental Analyzer (Carlo Erba NA 1500) calibrated against acetanilide. Total inorganic carbon was calculated by difference between TC and TOC.
DOI: 10.25921/8z6s-dk86
title: NOAA RESTORE Science Program: Gulf-wide assessment of habitat use and habitat-specific production estimates of nekton in turtlegrass (Thalassia testudinum): Nekton abundance, size, biomass, and associated environmental parameters in turtle-grass dominated seagrass beds in the northern Gulf of America, 2018-05-14-2019-09-06 (NCEI Accession 0305769)

description: This dataset consists of trawl and epibenthic sampling in turtlegrass-dominated seagrass beds of the northern Gulf of America, including Lower Laguna Madre, TX; Coastal Bend, TX; Chandeleur Islands, LA; St. George Sound, FL; Cedar Key, FL, and Charlotte Harbor, FL. The dataset consists of multiple .csv files containing nekton abundance, biomass, and size data, habitat characteristics including seagrass density and measurements, and abiotic measures of water quality.
DOI: 10.25921/vvkj-vv61
title: Survey effort, baleen whale sightings, and biopsy samples collected from Rice's whale (Balaenoptera ricei) by NOAA SEFSC from 2004-05-05 to 2019-07-31 (NCEI Accession 0306474)

description: The Southeast Fisheries Science Center (SEFSC) conducted 16 shipboard surveys in the Gulf of America (formerly U.S. waters of the Gulf of Mexico) between 2004 and 2019. This dataset includes data on survey effort, baleen whale sightings, photographs, and biopsy samples that were collected during these surveys and used to develop a photo-identification catalog for Rice’s whales (Balaenoptera ricei). This dataset also includes three opportunistically collected photos of whales. One photo each was provided by a member of the public, researchers from Oregon State University (O.S.U.) Marine Mammal Institute, and stranding responders from the Florida Fish and Wildlife Conservation Commission’s Marine Mammal Pathobiology Laboratory (FWC-MMPL).
DOI: 10.15468/dl.ws44s5
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((94.96626 5.92499,94.29736 4.90197,95.6745 3.80026,97.62217 2.12802,99.23538 -0.40985,102.08803 -4.61996,104.27178 -6.80371,105.8063 -6.23318,107.20312 -2.65262,105.23577 -0.7443,103.99635 0.49512,102.36346 1.28206,100.2584 3.13136,97.18935 5.96433,94.96626 5.92499))",
 "TaxonKey is Casearia"
 ]
}

 The dataset includes 65 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007621-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/b5xe-zq13
title: SALINITY, SEA SURFACE TEMPERATURE, and others collected from the R/V Mirai in Bering Sea - Coastal Waters of Western Alaska from 2024-10-02 to 2024-10-10 (NCEI Accession 0307282)

description: This dataset contains physical and biological oceanographic measurements, and atmospheric parameters were taken by CTD, bottles, and other instruments from the R/V Mirai, MR24-07 Leg1, in the Bering Sea to study the general oceanography of the Bering Sea. This dataset is U.S. State Department MSR U2024-010 as part of the World Data Services for Geophysics and Oceanography.
DOI: 10.25921/yk48-2n56
title: Dynamics of dissolved inorganic carbon in the Midriff Islands region of the Gulf of California: Influence of water masses from 2002-03-01 to 2004-09-15 (NCEI Accession 0307455)

description: In the Midriff Islands region (MIR) of the Gulf of California (Mexico), tidal mixing plays a very important role in the distribution of chemical properties. Although the temporal variability of the water masses is linked to the ocean dynamics of this region, its importance has not been considered. This work estimates the effect of water mass dynamics on the spatial distribution and seasonal variation of dissolved inorganic carbon (DIC) in the region, with special emphasis on the Ballenas Channel, during winter 2002, spring 2003, and summer 2004. Gulf of California Water (GCW) was found throughout the area in the first 100 m. Below, Subtropical Subsurface Water (SSW) filled the Delfín, Salsipuedes, and Tiburón basins, while to the southeast it was found between 150 and 350 m. Pacific Intermediate Water did not cross the sills. SSW enriches the surface water of the MIR with DIC when it increases in volume and when mixed with GCW by tidal effects. This contribution decreases towards summertime, when SSW sinks and the volume of GCW increases. In winter, GCW had three water types associated with oceanographic mixing processes and in combination with the presence of SSW. There was a strong DIC vs temperature relationship, which can be applied to analyze the carbon dynamics in the MIR, both at the surface using satellite imagery and vertically to simulate physical processes.
DOI: 10.17026/ls/i32j2j
title: Replication Data for: RUBATO-study
title: ExploRing preferences and attitUdes of Both patients And doctors TOwards surveillance after local resection of high-risk T1 colorectal cancer

description: This cross-sectional survey study aims to assess the preferences and attitudes of both locally treated T1CRC patients and physicians toward surveillance. In addition, we examine patients’ willingness to accept randomization of their follow-up strategy, thereby evaluating the feasibility of an RCT comparing reduced versus intensive surveillance after local resection of high-risk T1CRC.
DOI: 10.25921/vmcb-p243
title: Dissolved inorganic carbon, total alkalinity, pH on total scale, water temperature, salinity, dissolved oxygen, and other parameters obtained during the R/V Alpha Hélix cruise LM1506 (EXPOCODE 31HX20160302) in the North Pacific Ocean, Gulf of California from 2016-03-02 to 2016-03-08 (NCEI Accession 0309427)

description: This data set consists of dissolved inorganic carbon, total alkalinity, pH on total scale, water temperature, salinity, dissolved oxygen, and other parameters obtained during the R/V Alpha Hélix cruise LM1506 (EXPOCODE 31HX20160302) in the North Pacific Ocean, Gulf of California from 2016-03-02 to 2016-03-08. As a result of anthropogenic activities, it has been predicted that the ocean will be challenged with rising temperature, increased stratification, ocean acidification, stronger more frequent tropical storms, and oxygen depletion. In the tropical Pacific off central Mexico all these phenomena are already occurring naturally, providing a laboratory from which to explore ocean biogeochemical dynamics that are predicted under future anthropogenic forcing conditions. Here, seasonally anomalous surface tropical waters were detected as a result of the developing “Godzilla El Niño 2015–2016.” The incursion of this oxygenated water modified the local structure of an intense and shallow oxygen minimum zone (OMZ), partially eroding and intensifying the oxycline while having an associated impact on the carbon maximum zone. The core of the OMZ (&lt;4.4 μmol kg–1) was centered around 474 m, with a variant upper level between 50 and 360 m depth. Below the dominance of Tropical Surface Waters, the thickness of the oxycline varied between 10 and 325 m, with intensity values up to 11 μmol kg–1 m–1. The change in dissolved inorganic carbon (DIC) and apparent oxygen utilization yielded a molar ratio of δDIC = 0.98 × δAOU during June 2015 and of δDIC = 1.08 × δAOU for March 2016. A further decrease in the average content of DIC was observed in the carbon maximum zone for 2016. Traditionally, different explanations have been proposed to account for changing oxygen concentrations in the ocean rather than considering the interactions between multiple forcing factors. Our results highlight the significance of an episodic event like El Niño in the distribution and concentration of O2 and DIC and as a plausible mechanism of ventilation and increased oxygen availability in the upper OMZ of the tropical Pacific off central Mexico.
DOI: 10.15468/dl.3zn2ad
title: Occurrence Download

description: A dataset containing 3367 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Chamaedorea seifrizii",
 "Year 1000-2024"
 ]
}

 The dataset includes 3367 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007622-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3yxam
title: Occurrence Download

description: A dataset containing 245658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-25.89358 37.67101,-25.12456 37.67101,-25.12456 37.927,-25.89358 37.927,-25.89358 37.67101))",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2000-2025"
 ]
}

 The dataset includes 245658 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007592-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trwrff
title: Occurrence Download

description: A dataset containing 3371476 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.basisofrecord IN ('HUMAN_OBSERVATION', 'PRESERVED_SPECIMEN')
 AND occurrence.continent IN ('AFRICA', 'OCEANIA', 'EUROPE', 'ASIA', 'SOUTH_AMERICA', 'NORTH_AMERICA')
 AND GBIF_WITHIN('POLYGON((-180 -23.5,180 -23.5,180 23.5,-180 23.5,-180 -23.5))', occurrence.decimallatitude, occurrence.decimallongitude) = TRUE
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 7707728 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 7707728 OR CAST(occurrence.kingdomkey AS INTEGER) = 7707728 OR CAST(occurrence.phylumkey AS INTEGER) = 7707728 OR CAST(occurrence.classkey AS INTEGER) = 7707728 OR CAST(occurrence.orderkey AS INTEGER) = 7707728 OR CAST(occurrence.familykey AS INTEGER) = 7707728 OR CAST(occurrence.genuskey AS INTEGER) = 7707728 OR CAST(occurrence.specieskey AS INTEGER) = 7707728)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 3371476 records were derived from 2537 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007604-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wsg6a
title: Occurrence Download

description: A dataset containing 15295 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Esenbeckia Kunth"
 ]
}

 The dataset includes 15295 records from 364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007252-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5dj3m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Megaderma lyra É.Geoffroy Saint-Hilaire, 1810)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016045-250525065834625/datasets/export for details.
DOI: 10.15468/dl.qyuv7k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Megaderma lyra É.Geoffroy Saint-Hilaire, 1810)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016047-250525065834625/datasets/export for details.