cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rvzrsj
title: Occurrence Download

description: A dataset containing 12524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clytolaema rubricauda (Boddaert, 1783)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 12524 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025154-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vojyuo
title: Occurrence Download

description: A dataset containing 104563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Sciurus carolinensis Gmelin, 1788"
 ]
}

 The dataset includes 104563 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032022-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndpdap
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chiasmocleis parkeri Almendáriz C., Brito-M., Batallas-R., Vaca-Guerrero & Ron, 2017"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025134-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugikgo
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachemys decorata (Barbour & Carr, 1940)"
 ]
}

 The dataset includes 135 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032023-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvleia
title: Occurrence Download

description: A dataset containing 1554 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pituophis deppei (Duméril, 1853)"
 ]
}

 The dataset includes 1554 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032023-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugv8ih
title: Occurrence Download

description: A dataset listing the 1302214071 species recorded in GBIF matching the query:
{ }

 The dataset's 1302214071 records were derived from 23580 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001606-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17054996
title: Water-Guided Docking Improves Prediction of Protein–Glycan Complexes - Supporting Information

description: Lannot et al. (2025): Water-Guided Docking Improves Prediction of Protein–Glycan Complexes - Supporting Information

The available dataset is organized into 30 systems, each identified under the nomenclature HoloID_ApoID. Within each system folder, the basic input files required to perform the docking runs are provided, with intuitive filenames for ease of use:





reference_ligand.pdbqt: the ligand prepared in AutoDock-compatible .pdbqt format, on the reference pose from the holo complex




randomized_ligand.pdbqt: the ligand prepared in AutoDock-compatible .pdbqt format, on a randomized pose




holo_receptor.pdbqt: the holo conformation of the receptor, prepared and saved in .pdbqt format.




apo_receptor.pdbqt: the apo conformation of the receptor, structurally aligned to its holo counterpart, prepared and saved in .pdbqt format.




af3_receptor.pdbqt: the AlphaFold3-predicted conformation of the receptor, structurally aligned to the holo receptor and prepared in .pdbqt format.




config_file.conf: the configuration file containing the input parameters required to perform docking runs with ADV and the derivative versions of the software used in this study.



In addition, for selected representative systems, a sites.conf file is included. This file defines the WII sites employed in the WIIGA protocol, enabling reproducibility of the guided docking experiments. Representative systems were chosen based on ligand size and include the following:





4LBN_3ZSM – tetrasaccharide




3ACI_3ACF – pentasaccharide




5XUL_5XTJ – hexasaccharide




1DMB_1JW4 – heptasaccharide




3INA_3IMN – octasaccharide




7NOX_7O8C – nonasaccharide
DOI: 10.5281/zenodo.17055519
title: Water-Guided Docking Improves Prediction of Protein–Glycan Complexes - Supporting Information

description: Lannot et al. (2025): Water-Guided Docking Improves Prediction of Protein–Glycan Complexes - Supporting Information

The available dataset is organized into 30 systems, each identified under the nomenclature HoloID_ApoID. Within each system folder, the basic input files required to perform the docking runs are provided, with intuitive filenames for ease of use:





reference_ligand.pdbqt: the ligand prepared in AutoDock-compatible .pdbqt format, on the reference pose from the holo complex




randomized_ligand.pdbqt: the ligand prepared in AutoDock-compatible .pdbqt format, on a randomized pose




holo_receptor.pdbqt: the holo conformation of the receptor, prepared and saved in .pdbqt format.




apo_receptor.pdbqt: the apo conformation of the receptor, structurally aligned to its holo counterpart, prepared and saved in .pdbqt format.




af3_receptor.pdbqt: the AlphaFold3-predicted conformation of the receptor, structurally aligned to the holo receptor and prepared in .pdbqt format.




config_file.conf: the configuration file containing the input parameters required to perform docking runs with ADV and the derivative versions of the software used in this study.



In addition, for selected representative systems, a sites.conf file is included. This file defines the WII sites employed in the WIIGA protocol, enabling reproducibility of the guided docking experiments. Representative systems were chosen based on ligand size and include the following:





4LBN_3ZSM – tetrasaccharide




3ACI_3ACF – pentasaccharide




5XUL_5XTJ – hexasaccharide




1DMB_1JW4 – heptasaccharide




3INA_3IMN – octasaccharide




7NOX_7O8C – nonasaccharide
DOI: 10.25345/c5n873c8v
title: MassIVE MSV000100177 - GNPS - eDNAID Thrust 3 test samples M02
title: Water samples (ocean and river) as tests for eDNAID Thrust study (part of Qiita ID 16188). Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 1.7 um 100 A pore size C18 reversed phase UHPLC column 150 x 2.1 mm (Phenomenex, Torrance, CA). Method MS1 Res120K DDA Top5
DOI: 10.15468/dl.9yf5zv
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fimbriosthenelais longipinnis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 268 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045611-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtn8xd
title: Occurrence Download

description: A dataset containing 1199036356 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-124.78441 24.74332,-66.95138 24.74332,-66.95138 49.34579,-124.78441 49.34579,-124.78441 24.74332))",
 "Geometry POLYGON((-179 51.21418,-129.97951 51.21418,-129.97951 71.36516,-179 71.36516,-179 51.21418))",
 "Geometry POLYGON((-178.3347 18.91036,-154.80677 18.91036,-154.80677 28.40212,-178.3347 28.40212,-178.3347 18.91036))",
 "Geometry POLYGON((-68 17,-65 17,-65 19,-68 19,-68 17))",
 "Geometry POLYGON((-65.15 17,-64 17,-64 19,-65.15 19,-65.15 17))",
 "Geometry POLYGON((144.58 13.18,145.01 13.18,145.01 13.7,144.58 13.7,144.58 13.18))",
 "Geometry POLYGON((-170.8453 -14.37386,-169.42394 -14.37386,-169.42394 -14.15738,-170.8453 -14.15738,-170.8453 -14.37386))",
 "Geometry POLYGON((145.12025 14.11084,146.08218 14.11084,146.08218 18.81247,145.12025 18.81247,145.12025 14.11084))",
 "Geometry POLYGON((-180 -5,-150 -5,-150 20,-180 20,-180 -5))",
 "Geometry POLYGON((166 18.5,168 18.5,168 20.5,166 20.5,166 18.5))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is e2e717bf-551a-4917-bdc9-4fa0f342c530"
 ]
}

 The dataset includes 1199036356 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045537-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e241129
title: HIFLD OPEN Wreck Areas (USACE IENC)

description: The USACE IENCs coverage area consists of 7,260 miles across 21 rivers primarily located in the Central United States. IENCs apply to inland waterways that are maintained for navigation by USACE for shallow-draft vessels (e.g., maintained at a depth of 9-14 feet, dependent upon the waterway project authorization). Generally, IENCs are produced for those commercially navigable waterways which the National Oceanic and Atmospheric Administration (NOAA) does not produce Electronic Navigational Charts (ENCs). However, Special Purpose IENCs may be produced in agreement with NOAA.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e241129v2
title: HIFLD OPEN Wreck Areas (USACE IENC)

description: The USACE IENCs coverage area consists of 7,260 miles across 21 rivers primarily located in the Central United States. IENCs apply to inland waterways that are maintained for navigation by USACE for shallow-draft vessels (e.g., maintained at a depth of 9-14 feet, dependent upon the waterway project authorization). Generally, IENCs are produced for those commercially navigable waterways which the National Oceanic and Atmospheric Administration (NOAA) does not produce Electronic Navigational Charts (ENCs). However, Special Purpose IENCs may be produced in agreement with NOAA.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.15468/dl.aeex74
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palinustus truncatus"
 ]
}

 The dataset includes 19 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045612-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e241128
title: HIFLD OPEN WFIGS Interagency Fire Perimeters

description: This data set is part of an ongoing project to consolidate interagency fire perimeter data. Currently only certified perimeters and new perimeters captured starting in 2021 are included. A process for loading additional perimeters is being evaluated. The Wildland Fire Interagency Geospatial Services (WFIGS) Group provides authoritative geospatial data products under the interagency Wildland Fire Data Program. Hosted in the National Interagency Fire Center ArcGIS Online Organization (The NIFC Org), WFIGS provides both internal and public facing data, accessible in a variety of formats. This service includes perimeters for wildland fireincidents that meet the following criteria: Categorized in the IRWIN (Integrated Reporting of Wildland Fire Information) integration service as a Wildfire (WF) or Prescribed Fire (RX), Is Valid and not "quarantined" in IRWIN due to potential conflicts with other recordsAttribution of the source polygon is set to a Feature Access of Public, a Feature Status of Approved, and an Is Visible setting of YesPerimeters are not available for every incident. This data set is an ongoing project with the end goal of providing a national interagency fire history feature service of best-available perimeters. No "fall-off" rules are applied to this service. The date range for this service will extend from present day back indefinitely. Data prior to 2021 will be incomplete and incorporated as an ongoing project. Criteria were determined by an NWCG Geospatial Subcommittee task group. Data are refreshed every 5 minutes. Changes in the perimeter source may take up to 15 minutes to display. Perimeters are pulled from multiple sources with rules in place to ensure the most current or most authoritative shape is used.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e241128v2
title: HIFLD OPEN WFIGS Interagency Fire Perimeters

description: This data set is part of an ongoing project to consolidate interagency fire perimeter data. Currently only certified perimeters and new perimeters captured starting in 2021 are included. A process for loading additional perimeters is being evaluated. The Wildland Fire Interagency Geospatial Services (WFIGS) Group provides authoritative geospatial data products under the interagency Wildland Fire Data Program. Hosted in the National Interagency Fire Center ArcGIS Online Organization (The NIFC Org), WFIGS provides both internal and public facing data, accessible in a variety of formats. This service includes perimeters for wildland fireincidents that meet the following criteria: Categorized in the IRWIN (Integrated Reporting of Wildland Fire Information) integration service as a Wildfire (WF) or Prescribed Fire (RX), Is Valid and not "quarantined" in IRWIN due to potential conflicts with other recordsAttribution of the source polygon is set to a Feature Access of Public, a Feature Status of Approved, and an Is Visible setting of YesPerimeters are not available for every incident. This data set is an ongoing project with the end goal of providing a national interagency fire history feature service of best-available perimeters. No "fall-off" rules are applied to this service. The date range for this service will extend from present day back indefinitely. Data prior to 2021 will be incomplete and incorporated as an ongoing project. Criteria were determined by an NWCG Geospatial Subcommittee task group. Data are refreshed every 5 minutes. Changes in the perimeter source may take up to 15 minutes to display. Perimeters are pulled from multiple sources with rules in place to ensure the most current or most authoritative shape is used.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.34740/kaggle/dsv/14097210
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.u7trdn
title: Occurrence Download

description: A dataset containing 11941 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Acer saccharum"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to 40.49604",
 "DecimalLatitude is less than or equal to 45.01586",
 "DecimalLongitude is greater than or equal to -79.76215",
 "DecimalLongitude is less than or equal to -71.85615",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11941 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045613-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tg953n
title: Occurrence Download

description: A dataset containing 2448551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 49.085278",
 "DecimalLatitude is less than or equal to 54.085278",
 "DecimalLongitude is greater than or equal to 20.0",
 "DecimalLongitude is less than or equal to 25.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2448551 records from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045588-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzpu2c
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dayipsammolyce ctenidophora",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045616-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5hm52z6j
title: MassIVE MSV000100178 - GNPS - eDNAID Thrust 3 test samples M03
title: Water samples (ocean and river) as tests for eDNAID Thrust study (part of Qiita ID 16188). Untargeted LC-MS/MS acquisition was performed on a Vanquish Flex UHPLC system coupled to an Orbitrap Exploris 240 (Thermo Fisher Scientific, Bremen, Germany). Chromatographic separation was performed on a Kinetex 1.7 um 100 A pore size C18 reversed phase UHPLC column 150 x 2.1 mm (Phenomenex, Torrance, CA). Method MS1 Res60K DDA Top5
DOI: 10.15468/dl.5r6j9a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.884 -2.908829, 103.813647 -2.914393, 103.745023 -2.93095, 103.679818 -2.958092, 103.619635 -2.995152, 103.565954 -3.041217, 103.520098 -3.095155, 103.483195 -3.155638, 103.456155 -3.221179, 103.439645 -3.290164, 103.434074 -3.360896, 103.439581 -3.431633, 103.456033 -3.500632, 103.483027 -3.566196, 103.519901 -3.626708, 103.565747 -3.680677, 103.619438 -3.726774, 103.679651 -3.763862, 103.744902 -3.791026, 103.813583 -3.807597, 103.884 -3.813167, 103.954417 -3.807597, 104.023098 -3.791026, 104.088349 -3.763862, 104.148562 -3.726774, 104.202253 -3.680677, 104.248099 -3.626708, 104.284973 -3.566196, 104.311967 -3.500632, 104.328419 -3.431633, 104.333926 -3.360896, 104.328355 -3.290164, 104.311845 -3.221179, 104.284805 -3.155638, 104.247902 -3.095155, 104.202046 -3.041217, 104.148365 -2.995152, 104.088182 -2.958092, 104.022977 -2.93095, 103.954353 -2.914393, 103.884 -2.908829))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045614-251120083545085/datasets/export for details.
DOI: 10.15468/dl.mf8jnp
title: Occurrence Download

description: A dataset containing 1153716 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares)"
 ]
}

 The dataset includes 1153716 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045609-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34894/e18eyr
title: Data for Survey Research on Dutch L1 Teachers' Perspectives on Generative AI

description: Data were collected in a mixed-method survey study conducted in 2024, in which the perspectives of Dutch L1 teachers on generative AI were assessed. In the study, teachers were asked to indicate the current state of affairs regarding the use of generative AI in their schools (by both teachers and students). Moreover, their willingness to adopt generative AI was examined, using statements from TAM3 (technology acceptance model). The degree of concern regarding a number of GenAI-related issues was assessed, and the teachers were asked to describe the possibilities and challenges they see for the future implementation of generative AI in L1 education. Participants were teachers of the school subject Dutch Language and Literature in Dutch secondary education. They teach different educational levels: lower vocational (vmbo), higher vocational (havo), and pre-university (vwo) education. A representative sample of schools was taken. 124 teachers participated in the survey study.
DOI: 10.15468/dl.zapp8g
title: Occurrence Download

description: A dataset containing 32557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Gymnogyps californianus"
 ]
}

 The dataset includes 32557 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045618-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17804196
title: Enhanced Secondary-Electron Detection of Single Ion Implants in Silicon Through Thin SiO2 Layers

description: The experimental data in this spreadsheet was used to generate the results reported in the paper "Enhanced Secondary-Electron Detection of Single Ion Implants in Silicon Through Thin SiO2 Layers."

Deterministic placement of single dopants is essential for scalable quantum devices based on group-V donors in silicon. We demonstrate a non-destructive, high-efficiency method for detecting individual ion implantation events using secondary electrons (SEs) in a focused ion beam system. Using low-energy Sb ions implanted into un-doped silicon, we achieve up to 98 ± 1% single-ion detection efficiency (DE). We find introducing thin, controlled SiO2 capping layers enhances SE yield, consistent with increased electron mean free path in the oxide, while maintaining successful ion deposition in the underlying silicon substrate. Our approach provides a robust and scalable route to precise donor placement and extends deterministic implantation strategies toa broad range of material systems and quantum device architectures.

With the data supplied here, readers can reproduce all calculations and plots reported in the paper.
DOI: 10.15468/dl.2r9jvh
title: Occurrence Download

description: A dataset containing 216475 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "IucnRedListCategory is one of (VU, EN, CR)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2000-2025"
 ]
}

 The dataset includes 216475 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045586-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.