cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1168641.10fu
title: SH1168641.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1168642.10fu
title: SH1168642.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1168645.10fu
title: SH1168645.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1168648.10fu
title: SH1168648.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1168649.10fu
title: SH1168649.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1168651.10fu
title: SH1168651.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1168652.10fu
title: SH1168652.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.ixumfz
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Paraguay",
 "Country is Brazil",
 "Country is Argentina"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Micrurus corallinus (Merrem, 1820)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 234 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023408-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwaty4
title: Occurrence Download

description: A dataset containing 2184 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Chinese Taipei"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Glaucidium brodiei (Burton, 1836)"
 ]
}

 The dataset includes 2184 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209798-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvhebb
title: Occurrence Download

description: A dataset containing 911059 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Congo, Democratic Republic of the"
 ]
}

 The dataset includes 911059 records from 563 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023408-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8y7ts
title: Occurrence Download

description: A dataset containing 928719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Month is January"
 ]
}

 The dataset includes 928719 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151954-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i4hqnh
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Bergenia purpurascens var. sessilis H.Chuang"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023409-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gb926k
title: Occurrence Download

description: A dataset containing 3323575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-9029.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus L."
 ]
}

 The dataset includes 3323575 records from 641 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165613-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ci9tdz
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Salicornia bigelovii Torr."
 ]
}

 The dataset includes 696 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023410-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edga5m
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erythranthe moschata (Douglas ex Lindl.) G.L.Nesom",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 316 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165605-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94bkey
title: Occurrence Download

description: A dataset containing 26301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyphantria cunea (Drury, 1773)"
 ]
}

 The dataset includes 26301 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048015-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ahfk3
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((78.56632 -59.83033,78.56632 8.37280,248.89835 8.37280,248.89835 -59.83033,78.56632 -59.83033))",
 "HasCoordinate is true",
 "TaxonKey is Punica granatum L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 80 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023412-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvybjb
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis montana Raf.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 198 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0165580-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j0lype
title: Occurrence Download

description: A dataset containing 2783904 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 2783904 records from 1522 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023412-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggtmw6
title: Occurrence Download

description: A dataset containing 5758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Miconia minutiflora"
 ]
}

 The dataset includes 5758 records from 229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061688-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.2xrbzdzz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/dl.wv4mma
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ommatissus lybicus de Bergevin, 1930"
 ]
}

 The dataset includes 166 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045573-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.334haw
title: Occurrence Download

description: A dataset containing 109861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-129.41839 41.01895,-115.6873 41.01895,-115.6873 51.42338,-129.41839 51.42338,-129.41839 41.01895))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 109861 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045571-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10856828
title: Supporting data for the manuscript "Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads"

description: Supporting data for the manuscript "Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads".

The archive contains files that are necessary to reproduce the cell line benchmarks from the paper, including:



Original VCF outpurs of all tools used in benchmarking

Minda evaluations and truthset VCF files

Full Severus outputs + visualizations

truvari calls
DOI: 10.5281/zenodo.10856827
title: Supporting data for the manuscript "Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads"

description: Supporting data for the manuscript "Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads".

The archive contains files that are necessary to reproduce the cell line benchmarks from the paper, including:



Scripts and command lines

Original VCF outpurs of all tools used in benchmarking

Minda evaluations and truthset VCF files

Full Severus outputs + visualizations

truvari calls
DOI: 10.5281/zenodo.14541057
title: Supporting data for the manuscript "Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads"

description: Supporting data for the manuscript "Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads".

The archive contains files that are necessary to reproduce the cell line benchmarks from the paper, including:



Scripts and command lines

Original VCF outpurs of all tools used in benchmarking

Minda evaluations and truthset VCF files

Full Severus outputs + visualizations

truvari calls
DOI: 10.6084/m9.figshare.28074971
title: Huancavelica_S21: Table S21: Metabolic Pathways Grouped by Superclass 1 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practices

description: Huancavelica_S21: Table S21: Metabolic Pathways Grouped by Superclass 1 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practices
DOI: 10.6084/m9.figshare.28074971.v1
title: Huancavelica_S21: Table S21: Metabolic Pathways Grouped by Superclass 1 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practices

description: Huancavelica_S21: Table S21: Metabolic Pathways Grouped by Superclass 1 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practices
DOI: 10.15468/dl.2zv5nn
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((51.81888 23.93066,87.18112 23.93066,87.18112 38.06934,51.81888 38.06934,51.81888 23.93066))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is BOLD:AAQ3135"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045575-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28074962
title: Huancavelica_S22: Table S22: Metabolic Pathways Grouped by Superclass 2 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practice

description: Table S22: Metabolic Pathways Grouped by Superclass 2 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practice
DOI: 10.6084/m9.figshare.28074962.v1
title: Huancavelica_S22: Table S22: Metabolic Pathways Grouped by Superclass 2 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practice

description: Table S22: Metabolic Pathways Grouped by Superclass 2 Hierarchy in Potato Soil Samples Under No Rotation and Rotation Practice
DOI: 10.15468/dl.kvmfr7
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)"
 ]
}

 The dataset includes 103 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045576-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14541765
title: crotalus_viridis_spades_01.fasta.gz
DOI: 10.5281/zenodo.14541766
title: crotalus_viridis_spades_01.fasta.gz
DOI: 10.5281/zenodo.14541612
title: Raw data of the study group and the control group
DOI: 10.5281/zenodo.14541613
title: Raw data of the study group and the control group
DOI: 10.15468/dl.yrchmv
title: Occurrence Download

description: A dataset containing 48549 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrobrachium Spence Bate, 1868"
 ]
}

 The dataset includes 48549 records from 305 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045577-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvudj4
title: Occurrence Download

description: A dataset containing 845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chaetocercus berlepschi Simon, 1889"
 ]
}

 The dataset includes 845 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045578-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28074956
title: Huancavelica_S20: Table S20: Metabolic Pathways in Potato Soil Samples Under No Rotation and Rotation Practices

description: Table S20: Metabolic Pathways in Potato Soil Samples Under No Rotation and Rotation Practices
DOI: 10.6084/m9.figshare.28074956.v1
title: Huancavelica_S20: Table S20: Metabolic Pathways in Potato Soil Samples Under No Rotation and Rotation Practices

description: Table S20: Metabolic Pathways in Potato Soil Samples Under No Rotation and Rotation Practices
DOI: 10.15468/dl.byuk3d
title: Occurrence Download

description: A dataset containing 625 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solenopsis richteri Forel, 1909"
 ]
}

 The dataset includes 625 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045579-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5w6jd
title: Occurrence Download

description: A dataset containing 21096 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solenopsis invicta Buren, 1972"
 ]
}

 The dataset includes 21096 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045580-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28074959
title: Huancavelica_S4.xlsx _Table S4. Species list from Soil Samples Under Rotation and No Rotation Practices Based on Kraken2 Results

description: Huancavelica_S4.xlsx _Table S4. Species list from Soil Samples Under Rotation and No Rotation Practices Based on Kraken2 Results