cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fxz6gb
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vampyriscus brocki"
 ]
}

 The dataset includes 138 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023153-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17791348
title: Genome collection of gut bacterium Ruminococcus gnavus

description: Collection of high-quality whole-genome assemblies of the gut bacterium Ruminococcus gnavus. Sequences are included as gzipped fasta files in sequences/ and functional annotations as generated by Bakta are included as well (gene_annotations/; GenBank format, GFF3, TSV and TXT). This directory also contains Panaroo files that were used in the GWAS analysis as described in the manuscript (subdirectory gene_annotations/panaroo). For isolate genomes sequenced using PacBio Circular Consensus Sequencing, methylation data are available under methylation/.

There is a metadata file describing the origin of samples, when known. With this file, genome sequences can be related back to for example the age, sex and country of the person from whom the isolate was obtained.

Finally, there is a file with md5 checksums that may be used to verify file integrity.

This dataset was generated for the project described in this preprint: https://doi.org/10.1101/2024.06.27.600998

The manuscript has been published in Nature Communications: https://doi.org/10.1038/s41467-025-56449-x

Changelog:

Version 5:

 - includes panaroo pangenome analysis files, which may be used to study the candidate genes identified in the GWAS

Version 4.1:

 - has an updated metadata file including ENA accession numbers for the assemblies generated in this project. Version 4.1 has the public 'GCA' accession numbers for assemblies, rather than the internal 'ERZ' numbers which were in version 4.
DOI: 10.15468/dl.tmeab4
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scrupocellaria diadema",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 54 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023154-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.984984.1
title: Hydrothermal plume dispersion model outputs for the Endeavour Segment of the Juan de Fuca Ridge for the years 2016, 2021, and 2023

description: This dataset contains model output files from numerical simulations of hydrothermal plume dispersion at the Endeavour Segment of the Juan de Fuca Ridge, spanning two one-year periods in 2016 and 2021, as well as a 2.5-month period from mid-July to late September 2023. The simulations capture the complex interactions among seafloor hydrothermal discharge, deep-sea ocean currents, and mid-ocean ridge topography, and they illustrate the dispersion of hydrothermal plumes from the ridge segment into the surrounding ocean interior. Furthermore, the 2023 simulation was conducted in support of the research expedition AT50-15 to the Endeavour Segment in September 2023. Its outputs were used to guide at-sea autonomous underwater vehicle (AUV) surveys of hydrothermal plumes during the cruise. Following the expedition, the simulation was refined to improve its fidelity and the updated outputs were used to inform analysis of plume biogeochemistry. The model output files included in this repository are from the post-cruise refined simulation. All simulations were conducted using the Regional Ocean Modeling System (ROMS). The outputs, provided in NetCDF format, include three-dimensional fields of velocity, temperature, and salinity, along with additional model variables.
DOI: 10.15468/dl.8kxqek
title: Occurrence Download

description: A dataset containing 27762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-50.0",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is National Mammal Atlas Project, online recording",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is d3dd95c3-93d4-4349-a13f-55abf89ad140",
 "TaxonKey is Sciurus carolinensis",
 "Year 1990-2025"
 ]
}

 The dataset includes 27762 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023155-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240845
title: Global Gridded Relative Deprivation Index (GRDI), Version 1

description: The Global Gridded Relative Deprivation Index (GRDI), Version 1 (GRDIv1) data set characterizes the relative levels of multidimensional deprivation and poverty in each 30 arc-second (~1 km) pixel, where a value of 100 represents the highest level of deprivation and a value of 0 the lowest. GRDIv1 is built from sociodemographic and satellite data inputs that were spatially harmonized, indexed, and weighted into six main components to produce the final index raster. Inputs were selected from the best-available data that either continuously vary across space or have at least administrative level 1 (provincial/state) resolution, and which have global spatial coverage.<br>
description: Downloaded 2025-12-01.
DOI: 10.3886/e240845v2
title: Global Gridded Relative Deprivation Index (GRDI), Version 1

description: The Global Gridded Relative Deprivation Index (GRDI), Version 1 (GRDIv1) data set characterizes the relative levels of multidimensional deprivation and poverty in each 30 arc-second (~1 km) pixel, where a value of 100 represents the highest level of deprivation and a value of 0 the lowest. GRDIv1 is built from sociodemographic and satellite data inputs that were spatially harmonized, indexed, and weighted into six main components to produce the final index raster. Inputs were selected from the best-available data that either continuously vary across space or have at least administrative level 1 (provincial/state) resolution, and which have global spatial coverage.<br>
description: Downloaded 2025-12-01.
DOI: 10.15468/dl.hd5dgk
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nyctinomops aurispinosus"
 ]
}

 The dataset includes 399 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023156-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6yvgyd
title: Occurrence Download

description: A dataset containing 14724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Galanthus nivalis"
 ]
}

 The dataset includes 14724 records from 337 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023157-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/we6sbl
title: PAN-00143336 - Roman-Germanic pin with discs and knobs

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00143336&lt;/p&gt;
description: Modified: 2025-09-08T09:56:21+02:00
DOI: 10.15468/dl.62acht
title: Occurrence Download

description: A dataset listing the 10620 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-11.25397 31.72687,31.38271 29.35738,30.70161 41.84489,-10.27716 38.78236,-10.92063 38.93585,-11.25397 31.72687))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset's 10620 records were derived from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023138-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hnknr
title: Occurrence Download

description: A dataset containing 2603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scylla serrata",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2603 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023158-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17794730
title: Evaluación Programa de Inducción Profesores Nuevo Ingreso 2013-1 (Tijuana)

description: Evaluación Programa de Inducción Profesores Nuevo Ingreso 2013-1 (Tijuana)
DOI: 10.5281/zenodo.17794729
title: Evaluación Programa de Inducción Profesores Nuevo Ingreso 2013-1 (Tijuana)

description: Evaluación Programa de Inducción Profesores Nuevo Ingreso 2013-1 (Tijuana)
DOI: 10.15468/dl.pnjray
title: Occurrence Download

description: A dataset containing 196070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-11-07",
 "EventDate is less than or equal to 2025-12-07",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 196070 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023137-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/6psl59
title: PAN-00142204 - arrowhead (stone)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00142204&lt;/p&gt;
description: Modified: 2025-08-29T16:11:11+02:00
DOI: 10.15468/dl.uddg2h
title: Occurrence Download

description: A dataset containing 308536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Setophaga ruticilla",
 "HasCoordinate is True",
 "Year is 2019"
 ]
}

 The dataset includes 308536 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023121-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2nwf99
title: CCDC 2469221: Experimental Crystal Structure Determination

description: Related Article: Andres Gonzalez, Sascha Reith, Alexander Reckziegel, C. Gunnar Werncke|2025|Inorg.Chem.|||doi:10.1021/acs.inorgchem.5c03148
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nxxm4
title: CCDC 2470657: Experimental Crystal Structure Determination

description: Related Article: Andres Gonzalez, Sascha Reith, Alexander Reckziegel, C. Gunnar Werncke|2025|Inorg.Chem.|||doi:10.1021/acs.inorgchem.5c03148
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p0978
title: CCDC 2472939: Experimental Crystal Structure Determination

description: Related Article: Julian Avila-Duran, Jon Napal, Fernando Aguilar-Galindo, Oscar Castillo, Pilar Amo-Ochoa|2025|Inorg.Chem.|||doi:10.1021/acs.inorgchem.5c04083
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.qnenxe
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sidneioides peregrinus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023160-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/1a9yrv
title: PAN-00177493 - cast tubular lead net sinker

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00177493&lt;/p&gt;
description: Modified: 2025-07-31T17:18:55+02:00
DOI: 10.34740/kaggle/dsv/13963246
title: Coffee Bean Maturity Dataset
DOI: 10.15468/dl.3c4z6j
title: Occurrence Download

description: A dataset containing 1287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.77268 3.75911,-76.30606 3.75911,-76.30606 3.94567,-76.77268 3.94567,-76.77268 3.75911))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Perciformes"
 ]
}

 The dataset includes 1287 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023161-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17624449
title: The combined effects of temperature and salinity on the stomatogastric nervous system of two species of decapod crustacea (Part I)

description: This data set contains the raw data from all dissected lobser nervous systems and half of the crab nervous systems used for this publication. The repository with this repository's same name, but denoted "Part II" contains the remaining data. This repo also contains meta data used to create the plots and graphs published in the associated manuscript. Excel files contain the corresponding experiment names from the raw data files such that data should be able to be re-analyzed and easily associated with the data analysis performed by our labs (Powell Lab [Bowdoin College] and Marder Lab [Brandeis Univ.]).

If you have any questions or concerns, please contact Dan Powell, dpowell@bowdoin.edu.
DOI: 10.5281/zenodo.17624448
title: The combined effects of temperature and salinity on the stomatogastric nervous system of two species of decapod crustacea (Part I)

description: This data set contains the raw data from all dissected lobser nervous systems and half of the crab nervous systems used for this publication. The repository with this repository's same name, but denoted "Part II" contains the remaining data. This repo also contains meta data used to create the plots and graphs published in the associated manuscript. Excel files contain the corresponding experiment names from the raw data files such that data should be able to be re-analyzed and easily associated with the data analysis performed by our labs (Powell Lab [Bowdoin College] and Marder Lab [Brandeis Univ.]).

If you have any questions or concerns, please contact Dan Powell, dpowell@bowdoin.edu.
DOI: 10.15468/dl.uk696k
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinoflustra annae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023162-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57780/eca-a48dcfb
title: EarthCARE ATLID BBR CPR MSI DF Level 2B

description: EarthCARE ATLID BBR CPR MSI DF Level 2B baseline BC
DOI: 10.13140/rg.2.2.14864.67848
title: knowledge transfer
DOI: 10.17026/ar/qsqt69
title: PAN-00136922 - eye / Knick brooch

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00136922&lt;/p&gt;
description: Modified: 2025-06-03T12:10:01+02:00
DOI: 10.15468/dl.whx8v6
title: Occurrence Download

description: A dataset containing 61383 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -5.914722",
 "DecimalLatitude is less than or equal to -0.914722",
 "DecimalLongitude is greater than or equal to 30.0",
 "DecimalLongitude is less than or equal to 35.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 61383 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023132-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxt9t5
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinophis melanogaster (Gray, 1858)"
 ]
}

 The dataset includes 155 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281086-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a8kc8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prasinophyceae",
 "HasCoordinate is true",
 "Country is one of (Austria)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0212771-210914110416597/datasets/export for details.
DOI: 10.15468/dl.s2257j
title: Occurrence Download

description: A dataset containing 4510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Ursus arctos Linnaeus, 1758"
 ]
}

 The dataset includes 4510 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136159-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwchmb
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Banareia japonica (Odhner, 1925)"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008867-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35pcuw
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoxenodon karlschmidti Pope, 1928"
 ]
}

 The dataset includes 57 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281091-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ax2s44
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chloraea fonkii Phil."
 ]
}

 The dataset includes 102 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136148-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urgak5
title: Occurrence Download

description: A dataset containing 1826 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Collection des Mollusques (BOUM)"
 ]
}

 The dataset includes 1826 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022873-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ehmns
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chloraea grandiflora Poepp."
 ]
}

 The dataset includes 56 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136152-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9abnmt
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lygosoma corpulentum Smith, 1921"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281096-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.haj5u6
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Pisolithus Alb. & Schwein."
 ]
}

 The dataset includes 97 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198185-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.