cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fp0b8.2/5.2
title: Poolseq_SNP_geo.vcf

description: SNP data used for PoolSeq analyses of differentiation between sampling sites; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Popoolation v. 1.2.2, Popoolation2 v. 1.2.01, samtools v. 1.3.1, bcftools v. 1.3.1, htslib v. 1.3.1
DOI: 10.5061/dryad.fp0b8.2/6.2
title: README
DOI: 10.5061/dryad.g669j/1
title: Exp 1 change in light and substrate

description: Changes in body reflectance of fish held in tanks with varying light intensity and substrate reflectance
DOI: 10.5061/dryad.g669j/2
title: Exp 2 change in light and horiz background

description: Changes in body reflectance in fish held in tanks with varying light intensity and horizontal background reflectance
DOI: 10.5061/dryad.g669j/3
title: Exp 1 reflectance profiles clay models

description: Body reflectance of clay model fish photographed in tanks with black or white substrates
DOI: 10.5061/dryad.g669j/4
title: Exp 2 reflectance profiles clay models

description: Body reflectance of clay model fish held in tanks with black or white horizontal backgrounds
DOI: 10.5061/dryad.hn07q/2
title: Flory et al tree data

description: Species identity and diameter for trees found in reference and invaded plots with control and fire treatments in 2013.
DOI: 10.5061/dryad.jj8pn/1
title: Arthropod data from beech canopy fogging

description: Arthropod data collected on 80 subplots in the Bavarian Forests Nationalpark by canopy fogging in 2015
DOI: 10.5061/dryad.k46r2/3
title: Number of patches lookup table

description: Lookup table read by Netlogo code.
DOI: 10.5061/dryad.k46r2/4
title: Distance between patches lookup table

description: Lookup table read by Netlogo code.
DOI: 10.5061/dryad.k46r2/5
title: Map - Scenario 1.0

description: Landscape map portraying restoration Scenario 1.0
DOI: 10.5061/dryad.k46r2/6
title: TCB_Scen2.1b_map

description: Landscape map portraying restoration Scenario 2.1
DOI: 10.5061/dryad.k46r2/7
title: TCB_Scen2.2b_map

description: Landscape map portraying restoration Scenario 2.2
DOI: 10.5061/dryad.k46r2/8
title: TCB_Scen2.3b_map

description: Landscape map portraying restoration Scenario 2.3
DOI: 10.5061/dryad.k46r2/9
title: TCB_Scen2.4b_map

description: Landscape map portraying restoration Scenario 2.4
DOI: 10.5061/dryad.kq77d/1
title: Experimental results of testing the model prediction
DOI: 10.5061/dryad.kq77d/2
title: Simulation results of the individual-based model
DOI: 10.5061/dryad.kq77d/3
title: Experimental results of the experiment to test context-dependency
DOI: 10.5061/dryad.kq77d/4
title: Sediment parameters for the foraging experiments
DOI: 10.5061/dryad.ns8q3/15
title: Chrom_15_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/16
title: Chrom_16_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/17
title: Chrom_17_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/18
title: Chrom_18_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/19
title: Chrom_19_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/20
title: Chrom_20_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/21
title: Chrom_21_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.ns8q3/22
title: Chrom_22_t1d_results

description: Type 1 diabetes genetic case - control study results, with SNPs imputed genome-wide.
DOI: 10.5061/dryad.pc053/1
title: Code for regression of slope

description: We generated a linear regression of genetic distance (Dps) on Euclidean distance for each dyad type, then recorded the slope of the linear model.  This file provides code for one scenario, which included each of the ten simulated replicates.
DOI: 10.5061/dryad.pc053/2
title: Genotypes for bears from the Appalachian Mountains

description: File contains 20-loci genotypes for bears from population sin the Appalachian Mountains.  Genotyped by Wildlife Genetics International.  Each allele is coded for with three digits.
DOI: 10.5061/dryad.pc053/3
title: Input for CDPOP simulations

description: We used CDPOP v1.2.30 (Landguth and Cushman, 2010) for our simulations.  The headers in this file correspond to those required for input into this program.  Each line lists one of the individual simulations we ran.
DOI: 10.5061/dryad.pn090/1
title: treelizardcapturehistories

description: Mark-recapture history of ornate tree lizards (Urosaurus ornatus) at 10 sites and their growth rates.  id: numeric identifier for lizards
ch: capture histories of lizards (1 = detected, 0 = undetected at a capture event)
sex: sex of each lizard (M = male, F = female)
hab: character identifying whether the lizard’s mean coordinates were in the upland (u) or wash (w)
gr: growth rate (cm/day) of each lizard using the first and last capture measurements of snout-vent-length. Only lizards captured more than once in their first breeding season have values for growth rates.
DOI: 10.5061/dryad.pn090/2
title: weathersummary

description: Weather summary data for detection covariate in mark-recapture models in paper. site: number (1:10) identifying the site
columns labeled 1:13 contain the PC1 values from climate station data on the day of a capture event. The column label refers to the capture event for a site (eg. column labelled 1 contains PC1 of climate data for the first capture event at each site).
DOI: 10.5061/dryad.pn090/3
title: arthropodpitfalldata

description: Arthropod prey abundance at study sites in two habitats. arthropods: number of arthropod prey caught in each pitfall trap (over 24 hours)
month: number identifying month the trap was set
site: number (1:10) identifying the site where the trap was set
hab: character identifying whether the trap was set in the upland (u) or wash (w)
DOI: 10.5061/dryad.s342d/2
title: Supplementary_File_2_Nb_of_Quartets

description: Table containing the number of quartets needed for likelihood and geometric quartet mapping to get below a certain threshold of the final tree-likeness value, under different phylogenetic settings.
DOI: 10.5061/dryad.s342d/3
title: Supplementary_File_3_Influence_NbBp

description: Figure detailing the influence of the number of base pairs sampled on the best evolutionary rate.
DOI: 10.5061/dryad.s342d/4
title: Supplementary_File_1_Scripts

description: R scripts and simulation trees. Explanations are given in the file "Overview_Scripts.pdf"
DOI: 10.5061/dryad.s618v/1
title: Echeverri2017_courtshipAlignmentData

description: This dataset describes the geometry of male and female jumping spider during courtship.
DOI: 10.5061/dryad.s618v/2
title: Echeverri2017_kneeDisplaydata

description: This dataset describes the timing of males' "knee raise" displays.
DOI: 10.5061/dryad.tq221/1
title: STACKS fasta file output

description: The fasta file containing all loci identified by STACKS. This file was used to asses the genetic diversity across the four lineages of Primula farinosa
DOI: 10.5061/dryad.tq221/2
title: STACKS VCF file output

description: The VCF file containing alll SNPs identified by STACKS. This file was filtered and further used to assess genetic structure across the distribution of Primula farinosa in Europe
DOI: 10.5061/dryad.tq221/3
title: Occurrence records for Primula farinosa

description: The four csv files containing spatially filtered occurrences for the four lineages of Primula farinosa. These files were used for assessing niche breadth and conducting species distribution modelling
DOI: 10.5061/dryad.v5375/7
title: Size analysis_R_Step2

description: R markdown analysis showing how we calculated size distances among eggs.
DOI: 10.5061/dryad.v5375/8
title: Extraction of PCA shape_Step1

description: R markdown file that shows how we extracted shape coordinates from outline files obtained from egg photographs. Input file is the whole file called 'XY coordinates'.
DOI: 10.5061/dryad.v5375/9
title: XY coordinates

description: XY coordinates for each egg obtained from photographs.
DOI: 10.17632/fgtk4rhw6k.1
title: Data for: Stochastic analysis of embodied emissions of building construction: A comparative case study in China

description: This file presents the engineering quantities and emission factors in the case study, including the inventories, data qualities, and relevant distribution parameters.
DOI: 10.17632/fgtk4rhw6k.2
title: Data for: Stochastic analysis of embodied emissions of building construction: A comparative case study in China

description: This file presents the engineering quantities and emission factors in the case study, including the inventories, data qualities, and relevant distribution parameters.
DOI: 10.5061/dryad.02c47/1
title: Code_for_the_main_model

description: Code for the main model in the paper. The ReadMe file is contained in the folder.
DOI: 10.5061/dryad.02c47/2
title: Code_for_model_with_males_sexual_only

description: Code for the model with males reproducing only sexually and females reproducing both sexually and asexually. The ReadMe file is contained in the folder.
DOI: 10.5061/dryad.02c47/3
title: Code_for_relocation_of_sexual_seeds

description: Code used to simulate the model with long-range dispersal of seeds instead of adults, or asexual fragments. The ReadMe file is contained in the folder.
DOI: 10.5061/dryad.02c47/4
title: Data_for_Fig2

description: Data used to generate Fig. 2.
DOI: 10.5061/dryad.02c47/5
title: Data_for_Fig3

description: Data used to generate Fig. 3.
DOI: 10.5061/dryad.02c47/6
title: Data_for_Fig4

description: Data used to generate Fig. 4.
DOI: 10.5061/dryad.02c47/7
title: Data_for_Fig5

description: Data used to generate Fig. 5.
DOI: 10.5061/dryad.02c47/8
title: Data_for_Fig6

description: Data used to generate Fig. 6.
DOI: 10.5061/dryad.0hh97/1
title: Census data

description: This text file contains the raw juvenile, vegetative adults, and reproductive adults census counts for the entire experiment.
DOI: 10.5061/dryad.0hh97/2
title: Code

description: This file contains the R code used to visualize and analyze the data.
DOI: 10.5061/dryad.0hh97/3
title: Competition data

description: This text file contains interspecific competition scores for each growth cage.
DOI: 10.5061/dryad.0hh97/4
title: Fecundity data

description: This text file contains both individual and cage level fitness data.
DOI: 10.5061/dryad.0hh97/5
title: Moss scoring guide

description: This Microsoft Word document provides a guide and examples for non-Arabidopsis growth cover scoring which was used to estimate interspecific competition.
DOI: 10.5061/dryad.115g6/1
title: Microtopographic_TPSF

description: See README file.
DOI: 10.5061/dryad.12751/32
title: Appendix Figure 20

description: The Data (an Origin file) used for Appendix Figure 20
DOI: 10.5061/dryad.12751/33
title: Appendix Figure 22

description: The Data (an Origin file) used for Appendix Figure 22
DOI: 10.5061/dryad.12751/34
title: Appendix Figure 23

description: The Data (an Origin file) used for Appendix Figure 23
DOI: 10.5061/dryad.12751/35
title: Appendix Figure 24

description: The Data (an Origin file) used for Appendix Figure 24
DOI: 10.5061/dryad.12751/36
title: Appendix Figure 25

description: The Data (an Origin file) used for Appendix Figure 25
DOI: 10.5061/dryad.12751/37
title: Appendix Figure 26

description: The Data (an Origin file) used for Appendix Figure 26
DOI: 10.5061/dryad.12751/38
title: Appendix Figure 27

description: The Data (an Origin file) used for Appendix Figure 27
DOI: 10.5061/dryad.12751/39
title: Appendix Figure 28

description: The Data (an Origin file) used for Appendix Figure 28
DOI: 10.5061/dryad.12751/40
title: Appendix Figure 29

description: The Data (an Origin file) used for Appendix Figure 29
DOI: 10.5061/dryad.1436s/1
title: P/B ratio of Argopecten purpuratus and environmental factors

description: Annual changes in the production to biomass ratio of Argopecten purpuratus and environmental factors potentially affecting them
DOI: 10.5061/dryad.1436s/2
title: Growth parameters of Argopecten purpuratus and associated statistics

description: Estimation of growth parameters of Argopecten purpuratus using the ELEFAN_SA optimization procedure implemented in TropFishR. Ncohort: is the number of yearly repeating cohorts; Agemax: maximum age of the population; L∞ L asymptotic total length; K: von Bertalanffy growth constant; t_anchor: is the fraction of the year (ranging between 0 and 1) where yearly repeating growth curves cross length equal to zero; C: is a constant indicating the amplitude of the growth oscillation; ts is the fraction of a year where the sine wave oscillation begins; Φ´: growth performance index (see eq. 3); Rn_max: maximum possible score obtained during the fitness maximization process; ASP: available sum of peaks (for details see Mildenberger et al. 2017 [30]). CI: confidence intervals for growth parameters calculated with the jack knife technique [30]
DOI: 10.5061/dryad.1436s/3
title: Population parameters of Argopecten purpuratus

description: Monthly estimation of population parameters of Argopecten purpuratus in Bahia independencia: Mean abundance (number of individuals per square meter); Individual mass (g ash-free dry mass estimated for a standard individual of 65 mm in shell length); body size (mm, mean, minimum, Q1 percentil, Q2 percentil and maximum)
DOI: 10.5061/dryad.14mt6/1
title: data_for_submit_final
DOI: 10.5061/dryad.14nr4/2
title: coinfection_data

description: Conifection data set
DOI: 10.5061/dryad.14nr4/3
title: analysis 2

description: R script for coinfection analysis
DOI: 10.5061/dryad.1b070/1
title: Dataset
DOI: 10.5061/dryad.1m1hg/10
title: Structure analyses

description: Files associated with the Structure analyses.
DOI: 10.5061/dryad.1m1hg/4
title: Ion Torrent processed output, alignments and scripts

description: The Ion Torrent processed output, alignments and scripts for Triturus cristatus.
DOI: 10.5061/dryad.1m1hg/5
title: Ion Torrent unprocessed A

description: Unprocessed Ion Torrent data for Triturus cristatus part A.
DOI: 10.5061/dryad.1m1hg/6
title: Ion Torrent unprocessed B

description: Unprocessed Ion Torrent data for Triturus cristatus part B.
DOI: 10.5061/dryad.1m1hg/7
title: Ion Torrent filtered A

description: Filtered Ion Torrent data for Triturus cristatus part A.
DOI: 10.5061/dryad.1m1hg/8
title: Ion Torrent filtered B

description: Filtered Ion Torrent data for Triturus cristatus part B.
DOI: 10.5061/dryad.1m1hg/9
title: Ion Torrent filtered C.

description: Filtered Ion Torrent data for Triturus cristatus part C.
DOI: 10.5061/dryad.35tg5/1
title: dataset-Host provisioning behaviour favours mimetic begging calls in a brood parasitic cowbird

description: Playback experiment to assess the effectiveness of the nestling call structures of two brood parasites, the specialist screaming cowbird (Molothrus rufoaxillaris) and the generalist shiny cowbird (M. bonariensis), in stimulating parental provisioning in 25 nests of a shared host, the baywing (Agelaioides badius).  The effect of playback treatments on the number of feeding visits by baywing adults was analysed using generalised linear mixed models (GLMM) with log link function and Poisson error structure. Models were fitted using the glmer function included in lme4 package in R 3.1.2 (R Core Team 2014; Bates et al. 2015). Explanatory variables were playback treatment, treatment order and clutch composition (presence/absence of parasites), with nest identity included as a random effect.
DOI: 10.5061/dryad.478f5/1
title: KATM Kokanee and Sockeye Salmon genotypes

description: Genotype data from 13 microsatellite loci for Kokanee and Sockeye Salmon from the Katmai National Park and Preserve in southwest Alaska
DOI: 10.5061/dryad.5tj57/1
title: Alces_energy_endocrine
DOI: 10.5061/dryad.7ht5j/1
title: C_mauritanica_data

description: Sampling locations of Cataglyphis mauritanica colonies, and microsatellite genotype data for all individuals (males, queens and workers).
DOI: 10.5061/dryad.8rq18/1
title: Data from: Socially cued seminal fluid gene expression mediates responses in ejaculate quality to sperm competition risk

description: Gene expression data for 11 seminal fluid proteins in males exposed to rival song or reared in acoustic isolation, and gene expression following RNA interference
DOI: 10.5061/dryad.96p24/1
title: Fathers data

description: Data file includes blood vitamin concentrations and body weight of fathers consuming different quantities of B vitamins
DOI: 10.5061/dryad.96p24/2
title: Fathers Sperm MeDIP raw data

description: Raw data of methyl-DNA immunoprecipitation analysis of fathers sperm with Nimblegen arrays. Sample number in the top row.
DOI: 10.5061/dryad.c6j8p/1
title: Locations of foraging bumblebees along transects

description: colony_id = unique colony identifier; bee_id = unique bee identifier; transect = transect slash region name; sampling_point = the site along the transect where the bee was collected; season = season (early or late); day = days since Jan 1st 2012 when collection took place.
DOI: 10.5061/dryad.c6j8p/2
title: Locations of sampling points along transects

description: transect = transect slash region name; sampling_point = point along transect; easting_utm_zone10 = easting in m, location of point; northing_utm_zone10 = northing in m, location of point; season = sampling season (early or late); landscape_floral_density = average floral density in landscape (floral cover/m^2); patch_floral_density = average floral density in sampling point (floral cover/m^2)
DOI: 10.5061/dryad.c6j8p/3
title: Microsatellite genotypes

description: bee_id = unique bee identifier; a/b = genotype at microsat locus, 0 indicates missing data.
DOI: 10.5061/dryad.f6r60/1
title: Body size data across temperatures and food treatments in Sepsis punctum and Sepsis neocynipsea

description: Individual hind tibia length measurements (in mm) for Sepsis punctum and Sepsis neocynipsea raised at different temperatures and with different amounts of food.
DOI: 10.5061/dryad.fd57r/1
title: Species-level functional trait values for 32 tropical dry forest tree species
DOI: 10.5061/dryad.fm03p/1
title: S1 morphological and anatomical terms and HAO entries

description: comma-delimited list of all anatomical and morphological terms used in the paper, along with links to Hymenoptera Anatomy Ontology
DOI: 10.5061/dryad.fm03p/2
title: S2 material examined

description: comma-delimited file with records for specimens examined for each species description, along with specimen accession numbers, repositories, latitude and longitude, and verbatim label data
DOI: 10.5061/dryad.fp0b8.1
title: Data from: Towards understanding the genetic basis of mouth asymmetry in the scale-eating cichlid Perissodus microlepis
DOI: 10.5061/dryad.fp0b8.1/1.1
title: Phenotype_scores

description: Values of mouth bending angle measured in each individual, and samples used to prepare the ddRAD and Poolseq library respectively
DOI: 10.5061/dryad.fp0b8.2/1.2
title: Phenotype_scores

description: Values of mouth bending angle measured in each individual, and samples used to prepare the ddRAD and Poolseq library respectively
DOI: 10.5061/dryad.fp0b8/2
title: ddRAD_SNP_morph.vcf

description: SNP data used for ddRAD analyses of differentiation between morphs; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Stacks v. 1.29
DOI: 10.5061/dryad.fp0b8/3
title: Poolseq_SNP_morph.vcf

description: SNP data used for PoolSeq analyses of differentiation between morphs; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Popoolation v. 1.2.2, Popoolation2 v. 1.2.01, samtools v. 1.3.1, bcftools v. 1.3.1, htslib v. 1.3.1
DOI: 10.5061/dryad.fp0b8/4
title: ddRAD_SNP_geo.vcf

description: SNP data used for ddRAD analyses of differentiation between sampling sites; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Stacks v. 1.29
DOI: 10.5061/dryad.fp0b8/5
title: Poolseq_SNP_geo.vcf

description: SNP data used for PoolSeq analyses of differentiation between sampling sites; raw Illumina sequences archived to the NCBI Accession no. PRJNA324541; vcf file created using Popoolation v. 1.2.2, Popoolation2 v. 1.2.01, samtools v. 1.3.1, bcftools v. 1.3.1, htslib v. 1.3.1
DOI: 10.5061/dryad.fp0b8/6
title: README
DOI: 10.5061/dryad.h4b5d/1
title: The Matlab code
DOI: 10.5061/dryad.k46r2/10
title: TCB_Scen2.5b_map

description: Landscape map portraying restoration Scenario 2.5
DOI: 10.5061/dryad.k46r2/11
title: TCB_Scen3.1b_map

description: Landscape map portraying restoration Scenario 3.1
DOI: 10.5061/dryad.k46r2/12
title: TCB_Scen3.2b_map

description: Landscape map portraying restoration Scenario 3.2
DOI: 10.5061/dryad.k46r2/13
title: TCB_Scen3.3b_map

description: Landscape map portraying restoration Scenario 3.3
DOI: 10.5061/dryad.k46r2/14
title: TCB_Scen3.4b_map

description: Landscape map portraying restoration Scenario 3.4
DOI: 10.5061/dryad.k46r2/15
title: TCB_Scen3.5b_map

description: Landscape map portraying restoration Scenario 3.5
DOI: 10.5061/dryad.k46r2/16
title: TCB_Scen4.1b_map

description: Landscape map portraying restoration Scenario 4.1
DOI: 10.5061/dryad.k46r2/17
title: TCB_Scen4.2b_map

description: Landscape map portraying restoration Scenario 4.2
DOI: 10.5061/dryad.m41g1/1
title: Fish and environmental data on Sagami River (1993-99)

description: Presence-absence of 18 fish species obtained from a monitoring program conducted in the Sagami River basin in Japan by the Kanagawa Prefectural Fisheries Technology Center, Freshwater Experimental Station. Various explanatory variables (geographic, hydrologic, sampling, spatial) are also included for modeling species distributions.
DOI: 10.5061/dryad.ns8q3/23
title: Data dictionary

description: Data dictionary which describes all other files in the directory, which all have the same format.
DOI: 10.5061/dryad.pn090/4
title: thermalqualitydata

description: The thermal quality in study sites. time.tset: number of hours the thermal model was between 32.2 C and 26.0 C (preferred temperature range of ornate tree lizards) for each julian day a model recorded data
site: number (1:10) identifying the site
hab: character identifying whether the thermal model was in the upland (u) or wash (w)
month: number identifying the month
DOI: 10.5061/dryad.r7q86/1
title: S. torotoro pseudo-reference genome

description: Pseudo-reference genome for clean read alignment, consisting of assembled loci from probe library (S. t. ochracea, CAS ORN 97943) merged with on-target assemblies and 100 bp flanking regions from other modern DNA samples.
DOI: 10.5061/dryad.r7q86/2
title: S. torotoro 100% SNP matrix for adegenet

description: 100% complete SNP matrix of 19 Syma torotoro samples formatted for import to R package adegenet.
DOI: 10.5061/dryad.sj578/1
title: Table S1

description: Country to whose institutions authors of papers belonged (A); total scientific production in tropical biology as number of returns for the text string “_tropic*’in ISI WoS (B); total scientific production under the ISI WoS category of ‘ecology and environmental science’ (C); total research and development (R&D) personnel (D); relative production in tropical biology (E); and ratio between tropical biological scientific production and number of researchers (F). Relative production in tropical biology is calculated as (B) divided by (C). The ratio between tropical biology scientific production and number of researchers is calculated as (B) divided by (D). Results are ordered in decreasing order of number of tropical papers (B).