cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14679627
title: Supplementary Material for: Higher Frequency of Fish Intake May Be Associated with a Lower Neutrophil/Lymphocyte Ratio: Anti-Atherosclerotic Effects of Fish Consumption

description: <b><i>Background:</i></b> Higher fish consumption has been reported to be associated with a lower incidence of coronary artery disease (CAD). An elevated neutrophil/lymphocyte ratio (NLR), a marker of systemic inflammation, is reportedly associated with the development of adverse CAD events. We hypothesized that a higher fish intake was associated with a lower NLR. <b><i>Methods and Results:</i></b> This cross-sectional study was conducted in a cohort of 8,237 Japanese subjects who had no history of atherosclerotic cardiovascular disease registered at the Health Planning Center of Nihon University Hospital between April 2018 and March 2019. The average weekly frequency of fish intake was 2.32 ± 1.31 days. The NLR decreased significantly as the weekly frequency of fish intake (0 day, 1–2 days, 3–4 days, or 5–7 days) increased (<i>p</i> = 0.001). A multiple stepwise regression analysis identified the weekly frequency of fish intake (β = −0.045, <i>p</i> &lt; 0.0001) and habitual alcohol intake (β = −0.051, <i>p</i> &lt; 0.0001) as significant but weak, negative, and independent determinants of the NLR. Conversely, the presence of metabolic syndrome (β = 0.046, <i>p</i> &lt; 0.0001), the presence of treatment for diabetes mellitus (β = 0.054, <i>p</i> &lt; 0.0001), and the presence of treatment for hypertension (β = 0.043, <i>p</i> &lt; 0.0001) were significant positive and independent determinants of the NLR. <b><i>Conclusions:</i></b> The present results suggest that a higher frequency of fish intake appears to be associated with a lower NLR, suggesting an anti-systemic inflammation effect. This association may partially explain the preventive effects of a higher fish intake on CAD events.
DOI: 10.5517/ccdc.csd.cc22ytvq
title: CCDC 1935294: Experimental Crystal Structure Determination

description: Related Article: Jianwen Lan, Ye Qu, Ping Xu, Jianmin Sun|2021|Green Energy & Environ.|6|66|doi:10.1016/j.gee.2019.12.005
DOI: 10.5281/zenodo.4806413
title: Northern Iberian rainfall stable isotope values at event scale

description: This is a large dataset of rainfall isotopic measurements (d<sup>18</sup>O<sub>p</sub> and d<sup>2</sup>H<sub>p</sub>), sampled every day or two days from seven sites on a west-to-east transect across northern Spain for 2010-2017: Oviedo, El Pindal, Borrastre, Ortigosa de Cameros, Molinos, Barcelona and Mallorca. It has been used to (1) characterize the rainfall isotopic variability in northern Spain at daily and monthly time scales, and (2) assess the principal factors influencing rainfall isotopic variability. Published at: Atmospheric Chemisty and Physics 2021
DOI: 10.5281/zenodo.4806412
title: Northern Iberian rainfall stable isotope values at event scale

description: This is a large dataset of rainfall isotopic measurements (d<sup>18</sup>O<sub>p</sub> and d<sup>2</sup>H<sub>p</sub>), sampled every day or two days from seven sites on a west-to-east transect across northern Spain for 2010-2017: Oviedo, El Pindal, Borrastre, Ortigosa de Cameros, Molinos, Barcelona and Mallorca. It has been used to (1) characterize the rainfall isotopic variability in northern Spain at daily and monthly time scales, and (2) assess the principal factors influencing rainfall isotopic variability. Published at: Atmospheric Chemisty and Physics 2021
DOI: 10.21227/g1g1-6205
title: Supplementary data for the manuscript "End-fire Optical Phased Array Designs with Multimode Interference Structures on InP, SiN and Polymer Platforms"

description: 3D-FDTD simulation results included in the manuscript "End-fire Optical Phased Array Designs with Multimode Interference Structures on InP, SiN and Polymer Platforms"
DOI: 10.5281/zenodo.4804382
title: Conformational ensembles used in "Refining conformational ensembles of flexible proteins against SAXS data; Pesce F. and Lindorff-Larsen K."

description: Conformational ensembles of Histatin5, Sic1, Tau generated with Flexible-meccano and converted to all-atom models with PULCHRA. TIA-1 ensemble from https://doi.org/10.1371/journal.pcbi.1007870 These ensembles have been used for SAXS calculations and reweighting against experimental SAXS data to study the effect of the hydration layer description on the reweighted ensembles.
DOI: 10.15468/cw2hfj
title: Two new species of the genus Criotettix Bolivar (Orthoptera: Tetrigoidea Scelimenidae) from Zhejiang, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Ziyang, Liu, Zhixing, Yin, Hong (2021): Two new species of the genus Criotettix Bolivar (Orthoptera: Tetrigoidea Scelimenidae) from Zhejiang, China. Zootaxa 4975 (1): 187-192, DOI: https://doi.org/10.11646/zootaxa.4975.1.8
DOI: 10.24378/exe.3283
title: Working memory updating training reduces state repetitive negative thinking: proof-of-concept for a novel cognitive control training (dataset)

description: This is the dataset used for the Roberts et al. (2021) article "Working memory updating training reduces state repetitive negative thinking: proof-of-concept for a novel cognitive control training" published in Behaviour Research and Therapy.
description: Baseline and outcome data evaluating whether working memory training using neutral or negative stimuli reduce state RNT. IBM SPSS statistics is required to access the dataset.
description: The article associated with this dataset is available in ORE at: http://hdl.handle.net/10871/125834
DOI: 10.6084/m9.figshare.11151185
title: Supplementary data for Bos grunniens genomic assembly (BosGru3.0) and population structural variation

description: This repository contains annotation file of the BosGru3.0 genome sequence, the data set of population-scale SV results.
DOI: 10.6084/m9.figshare.14679955
title: Stimulus Bird Data from Perception of infection: disease-related social cues influence immunity in songbirds

description: Dataset containing mass, fat score, eye score, and antibody values for each stimulus (MG, Control) bird.
DOI: 10.6084/m9.figshare.14679961
title: Multifactor Analysis R Script FIile from Perception of infection: disease-related social cues influence immunity in songbirds

description: R script used for the multifactorial analysis examining immune profiles in MG-focal and control-focal birds
DOI: 10.6084/m9.figshare.14679961.v1
title: Multifactor Analysis R Script FIile from Perception of infection: disease-related social cues influence immunity in songbirds

description: R script used for the multifactorial analysis examining immune profiles in MG-focal and control-focal birds
DOI: 10.6084/m9.figshare.14679964
title: Multifactor Analysis Text File from Perception of infection: disease-related social cues influence immunity in songbirds

description: Dataset used in the immune profile multifactorial analysis
DOI: 10.6084/m9.figshare.14679967.v1
title: Focal Bird Data from Perception of infection: disease-related social cues influence immunity in songbirds

description: Dataset containing mass, fat score, and immune endpoint values for each focal bird.
DOI: 10.6084/m9.figshare.14679964.v1
title: Multifactor Analysis Text File from Perception of infection: disease-related social cues influence immunity in songbirds

description: Dataset used in the immune profile multifactorial analysis
DOI: 10.6084/m9.figshare.14679967
title: Focal Bird Data from Perception of infection: disease-related social cues influence immunity in songbirds

description: Dataset containing mass, fat score, and immune endpoint values for each focal bird.
DOI: 10.6084/m9.figshare.13985507
title: Effectiveness of pitfall trapping

description: We aimed to evaluate the effect of the trap diameter size, the fixing solution and their combination on the capture efficacy for harvestmen (Opiliones) and millipedes (Diplopoda). We expected to find a higher species diversity and abundance of both groups in larger traps. We also expected that larger species would be captured less in smaller traps than in larger traps. We used pitfall traps with three different diameter sizes; 3 cm, 5 cm and 12 cm, filled with three types of fixing agents (saturated solution of NaCl, 10:1 mixture of 70% ethanol and glycerol and 4% formaldehyde). Altogether 90 traps representing nine combinations of the trap diameter and fixing solution were placed in the field in the spring and autumn term. The dataset represents the list of recorded species and their epigaeic activities (pooled for spring and autumn period) captured in pitfall traps differing in solution type and diameter size. The mean body sizes of millipedes and harvestmen weighted by the species abundances were calculated for each trap.
DOI: 10.6084/m9.figshare.13985507.v1
title: Effectiveness of pitfall trapping

description: We aimed to evaluate the effect of the trap diameter size, the fixing solution and their combination on the capture efficacy for harvestmen (Opiliones) and millipedes (Diplopoda). We expected to find a higher species diversity and abundance of both groups in larger traps. We also expected that larger species would be captured less in smaller traps than in larger traps. We used pitfall traps with three different diameter sizes; 3 cm, 5 cm and 12 cm, filled with three types of fixing agents (saturated solution of NaCl, 10:1 mixture of 70% ethanol and glycerol and 4% formaldehyde). Altogether 90 traps representing nine combinations of the trap diameter and fixing solution were placed in the field in the spring and autumn term. The dataset represents the list of recorded species and their epigaeic activities (pooled for spring and autumn period) captured in pitfall traps differing in solution type and diameter size. The mean body sizes of millipedes and harvestmen weighted by the species abundances were calculated of each trap.
DOI: 10.7795/720.20200803
title: Modulation-based long-range interferometry as basis for an optical two-color temperature sensor [Dataset]

description: Investigations of an 2f/3f detection scheme for phase detection. The laser frequency of the light source is sinusoidally modulated, and the interferometric phase derived from the harmonic signals. In this article we discuss measurement scheme, approach-included challenges and present first verification experiments over a range of 20m.
description: Description of the individual files: Each data file within this dataset is related to one figure of the related publication: Proceedings of the 20th international conference of the European society for precision engineering and nonotechnology 8th-12th June 2020 Virtual Conference Files with the extension DAT are space-separated tabular data which can be opened with any text editor. The data is grouped in folders following the structure of the publication: \Data\Figure2a- Signal from Lock-In\... ...\Figure_2a_1f2f.DAT ...\Figure_2a_2f3f.DAT \Data\Figure2b- Change in modulation amplitude- long range\... ...\Figure_2b.DAT \Data\Figure2b- Change in modulation amplitude- small range\... ...\Figure_2c.DAT \Data\Figure2d- Length deviation from reference\... ...\Figure_2d_1f2f.DAT ...\Figure_2d_Renishaw.DAT
DOI: 10.15161/oar.it/73810
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.14680033.v1
title: SupplementaryMaterial.FileS1 for Mandibular morphology, task specialization, and bite mechanics in Pheidole ants (Hymenoptera: Formicidae)

description: Three-dimensional reconstructions of Pheidole hetschkoi and P. cf. lucretti workers mandibles used in the Finite Element Analysis simulations.
DOI: 10.17037/data.00002254
title: England-Codelist-ICD10-Outcomes

description: ICD-10 codes (HES) for heart failure, myocardial infarction, stroke, and acute kidney injury.
DOI: 10.17037/data.00002257
title: England-Codelist-ReadCodes-Covariates

description: Read codes (CPRD) for covariates, including communal living, renal replacement therapy, cerebrovascular disease, congestive heart failure, chronic obstructive pulmonary disease, diabetes, hypertension, ischaemic heart disease, myocardial infarction, peripheral artery disease, severe mental illness, connective tissue disease, dementia, peptic ulcer disease, haematological cancer, non-haematological cancer, liver disease, smoking status, alcohol status.
DOI: 10.17037/data.00002256
title: England-Codelist-ICD10-Covariates

description: ICD-10 codes (HES) for acute kidney injury, diabetes, cerebrovascular disease, congestive heart failure, chronic obstructive pulmonary disease, ischaemic heart disease, myocardial infarction, peripheral artery disease, hypertension, connective tissue disease, dementia, peptic ulcer disease, haematological cancer, non-haematological cancer, liver disease, smoking status, alcohol status.
DOI: 10.17037/data.00002261
title: Denmark-Codelist-ICD10-Stroke-Outcome

description: ICD-10 codes for stroke. These cover subarachnoid haemorrhage, intracerebral haemorrhage, and cerebral infarction.
DOI: 10.5281/zenodo.4792290
title: Ideal observer analysis for continuous tracking of numerosity

description: Dataset for the article "Ideal observer analysis for continuous tracking of numerosity"
DOI: 10.5281/zenodo.4792289
title: Ideal observer analysis for continuous tracking of numerosity

description: Dataset for the article "Ideal observer analysis for continuous tracking of numerosity"
DOI: 10.6084/m9.figshare.14680076.v1
title: Appendix 3 from Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen

description: This file contains a table of transmission model parameters, and tabular versions of study results described in the text.
DOI: 10.6084/m9.figshare.14680076
title: Appendix 3 from Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen

description: This file contains a table of transmission model parameters, and tabular versions of study results described in the text.
DOI: 10.17037/data.00002258
title: Denmark-Codelist-ICD10-AKI-Outcome

description: ICD-10 codes for acute kidney injury (AKI), in association with tubular necrosis, acute cortical necrosis, or medullary necrosis.
DOI: 10.6084/m9.figshare.12854572.v1
title: The natural history of the genus <i>Cypripedium</i> (Orchidaceae)

description: The genus <i>Cypripedium</i> is one of five monophyletic genera within slipper orchids. Nuclear ribosomal ITS, nuclear low copy gene (<i>ACO</i>) and plastid data were used for molecular clock analyses. According to these analyses, the most recent common ancestor of <i>Cypripedium</i> appeared in the early Eocene. The <i>Irapeana</i> section is the oldest phylogenetic line within <i>Cypripedium</i>. The analyses indicate that after the Middle Eocene Climatic Optimum (c. 41 Ma) three main evolutionary lineages were split. Other important evolutionary processes took place in the late Oligocene-early Miocene. In this period, there were numerous divergence events within species groups characterized by transcontinental disjunction.
DOI: 10.6084/m9.figshare.12854572
title: The natural history of the genus <i>Cypripedium</i> (Orchidaceae)

description: The genus <i>Cypripedium</i> is one of five monophyletic genera within slipper orchids. Nuclear ribosomal ITS, nuclear low copy gene (<i>ACO</i>) and plastid data were used for molecular clock analyses. According to these analyses, the most recent common ancestor of <i>Cypripedium</i> appeared in the early Eocene. The <i>Irapeana</i> section is the oldest phylogenetic line within <i>Cypripedium</i>. The analyses indicate that after the Middle Eocene Climatic Optimum (c. 41 Ma) three main evolutionary lineages were split. Other important evolutionary processes took place in the late Oligocene-early Miocene. In this period, there were numerous divergence events within species groups characterized by transcontinental disjunction.
DOI: 10.17037/data.00002260
title: Denmark-Codelist-ICD10-MyocardialInfarction-Outcome

description: ICD-10 codes for myocardial infarction, including acute myocardial dysfunction, transmural myocardial infarction, and subendocardial myocardial infarction.
DOI: 10.6084/m9.figshare.14579697.v3
title: Figures_Tables_Supplementary materials-MDPI

description: Molecular characteristics and minimum inhibitory concentration values of C. difficile clinical isolates in Thailand
DOI: 10.5281/zenodo.4723385
title: Rural-Urban depression prevalence in Rwanda

description: Dataset of depression prevalence among Rwandan grandmothers and their daughters.
DOI: 10.5281/zenodo.4106438
title: Machine learning protocol code

description: README.md This project "A Machine Learning Protocol for Predicting Protein Infrared Spectra" was supported by Prof. Shaul Mukamel(the University of California, Irvine), Prof. Jonathan D. Hirst(University of Nottingham),and Prof.Jun Jiang(University of Science and Technology of China). Simulation data and code of ML protocl for IR spectra of proteins. Any researchers who interested in protein spectroscopy can use our ML protcol online service: http://dcaiku.com:12880/platform/first For the machine learning protocol source code written in Python and Bash language which including: 1.1.py: Split the protein into individual peptide bonds and dipeptides. 1.2.py: Calculate the center of mass for each each peptide bond and dipeptide. 1.3.sh: Convert the pdb format file to xyz format 2.py: Extracte the Coulomb Matrix (CM) descriptors of peptide bond and dipeptide.. 3.py: Predict the vibrational frequency and vibrational transition dipole moment of each peptide bond from trained NMA Neural Networks (NN) model. 4.py: Predict the neighboring coupling of each dipeptide from trained GLDP NN model. 5.sh: Generate the input file for SPECTRON program to calculate the IR spectra of proteins. 6.py: Construct the model Hamiltonian for amide I vibrations in a protein based on vibration exciton model theory. IR.sh: Diagonalize the Hamilton matrix calculate the IR spectra by using the SPECTRON.
DOI: 10.5281/zenodo.4106437
title: Machine learning protocol code

description: README.md This project "A Machine Learning Protocol for Predicting Protein Infrared Spectra" was supported by Prof. Shaul Mukamel(the University of California, Irvine), Prof. Jonathan D. Hirst(University of Nottingham),and Prof.Jun Jiang(University of Science and Technology of China). Simulation data and code of ML protocl for IR spectra of proteins. Any researchers who interested in protein spectroscopy can use our ML protcol online service: http://dcaiku.com:12880/platform/first For the machine learning protocol source code written in Python and Bash language which including: 1.1.py: Split the protein into individual peptide bonds and dipeptides. 1.2.py: Calculate the center of mass for each each peptide bond and dipeptide. 1.3.sh: Convert the pdb format file to xyz format 2.py: Extracte the Coulomb Matrix (CM) descriptors of peptide bond and dipeptide.. 3.py: Predict the vibrational frequency and vibrational transition dipole moment of each peptide bond from trained NMA Neural Networks (NN) model. 4.py: Predict the neighboring coupling of each dipeptide from trained GLDP NN model. 5.sh: Generate the input file for SPECTRON program to calculate the IR spectra of proteins. 6.py: Construct the model Hamiltonian for amide I vibrations in a protein based on vibration exciton model theory. IR.sh: Diagonalize the Hamilton matrix calculate the IR spectra by using the SPECTRON.
DOI: 10.5286/isis.e.rb2000277
title: Debasement of Roman Silver coinage

description: The quality of ancient silver coinage is often seen as a comment on the fiscal health of the issuing states. This is nowhere more apparent than with Roman coinages, which witnessed debasements during the first three centuries of our era. Most Roman silver coins were produced from an alloy of Ag and Cu. This enabled Roman mints to disguise debasements from the general public by exploiting the dissimilarity between the electrode potentials of the two metals.The blanks for the coins were cast, and they were kept or reheated at red heat to oxidise the copper at the surfaces of the blanks. The copper could then be stripped out of the alloy by soaking in an acid. This left a honeycomb structure of nearly pure silver at the surface of the blanks. We proposed to apply Neutron Tomography on IMAT in order to visualise in 3D the presence of the Ag layer arising from Cu depletion.
DOI: 10.5286/isis.e.rb2000277-1
title: Debasement of Roman Silver coinage

description: The quality of ancient silver coinage is often seen as a comment on the fiscal health of the issuing states. This is nowhere more apparent than with Roman coinages, which witnessed debasements during the first three centuries of our era. Most Roman silver coins were produced from an alloy of Ag and Cu. This enabled Roman mints to disguise debasements from the general public by exploiting the dissimilarity between the electrode potentials of the two metals.The blanks for the coins were cast, and they were kept or reheated at red heat to oxidise the copper at the surfaces of the blanks. The copper could then be stripped out of the alloy by soaking in an acid. This left a honeycomb structure of nearly pure silver at the surface of the blanks. We proposed to apply Neutron Tomography on IMAT in order to visualise in 3D the presence of the Ag layer arising from Cu depletion.
DOI: 10.5286/isis.e.rb2000198-2
title: Non-invasive characterization of a set of Roman equestrian statuary bronze fragments through Neutron Diffraction

description: This experiment aims to characterize the composition, the microstructure and all the characteristics related to the production and manufacturing methods of a set of bronze fragments (believed to be from the Roman age), recovered from the sand cave inside a lake in the Renai Park (Signa, FI, Italy).The fragments are made up of portions of a horse, human figures, draperies and plates of a basement, and could belong to an equestrian monument or several sculptural groups. These artifacts are currently undergoing restoration at the Opificio delle Pietre Dure in Florence and will be available for diagnostic investigations only until June 2021. It is therefore a unique opportunity to analyse, by means of Neutron Diffraction, large samples representative of monumental works of art otherwise impossible to move for diagnostic analysis.
DOI: 10.34808/pn3v-1491
title: PULSE and ECG measurement from the hand with elbows to the body - Second Man 29 age

description: The data set presents the measurements of the pulse and the ECG signal from the hand made with the use of a proprietary measuring system based on the AD8232 chip, a set of green diode and a phototransistor made on the STM32 microcontroller. Thanks to such a constructed device, it is possible to measure the ECG signal in a non-standard way - from the hand in combination with pulse detection. The results show the ECG signal and the pulse for the concise positioning of the hands and forearms in relation to the body and in relation to the measuring device. With the help of the presented results, it is possible to determine or test the best possible hand layout in order to record data in which individual anatomical features are eliminated as well as possible. Additionally, the integration of two measuring systems illustrates the mutual interaction of two measuring systems.
Measurement scenarios:  elbows to the body
Born: november 1991