cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12456638
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-35997 to JVASP-37065)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456635
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-33818 to JVASP-35996)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456635.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-33818 to JVASP-35996)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456626
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-22434 to JVASP-25327)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456629
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-25328 to JVASP-29060)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456632
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-29063 to JVASP-33814)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456632.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-29063 to JVASP-33814)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456623
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-20261 to JVASP-22430)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456620
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-18771 to JVASP-20260)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456617
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-17852 to JVASP-18770)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.12456308
title: eurodh_data.tar.gz

description: Supplementary data for <br>Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces (https://doi.org/10.1534/g3.120.401196)
DOI: 10.6084/m9.figshare.12456308.v1
title: eurodh_data.tar.gz

description: Supplementary data for <br>Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces (https://doi.org/10.1534/g3.120.401196)
DOI: 10.6084/m9.figshare.12456158
title: Data for Published Figures

description: Intermediate band InGaN/GaN solar cell on silicon publication data for Communications materials
DOI: 10.6084/m9.figshare.12456062
title: Experiment 2.xlsx

description: Data of Experiment 2<br>
DOI: 10.6084/m9.figshare.12456182.v1
title: BoB_bathymetry

description: 2020 gridded bathymetry from GEBCO
DOI: 10.6084/m9.figshare.12455954
title: Metadata record for: A global dataset of surface water and groundwater salinity measurements from 1980-2019

description: This dataset contains key characteristics about the data described in the Data Descriptor A global dataset of surface water and groundwater salinity measurements from 1980-2019. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12455954.v1
title: Metadata record for: A global dataset of surface water and groundwater salinity measurements from 1980-2019

description: This dataset contains key characteristics about the data described in the Data Descriptor A global dataset of surface water and groundwater salinity measurements from 1980-2019. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12455825
title: Microclimate input file - Dissertation

description: Raw input file in csv format for eight Niche Mapper microclimate models
DOI: 10.6084/m9.figshare.12455828
title: Biophysical model inputs - Dissertation

description: Niche Mapper biophysical model inputs for 13 species in 8 different environments.
DOI: 10.6084/m9.figshare.12455825.v1
title: Microclimate & Biophysical input filee - Dissertation

description: Raw input file in csv format for microclimates used in dissertation research
DOI: 10.6084/m9.figshare.12455828.v1
title: Biophysical model inputs - Dissertation

description: Niche Mapper biophysical model inputs for 13 species in 8 different environments.
DOI: 10.6084/m9.figshare.12455825.v2
title: Microclimate input file - Dissertation

description: Raw input file in csv format for eight Niche Mapper microclimate models
DOI: 10.6084/m9.figshare.12455825.v4
title: Microclimate input file - Dissertation

description: Raw input file in csv format for eight Niche Mapper microclimate models
DOI: 10.6084/m9.figshare.12455828.v2
title: Biophysical model inputs - Dissertation

description: Niche Mapper biophysical model inputs for 13 species in 8 different environments.
DOI: 10.6084/m9.figshare.12455825.v3
title: Microclimate input file - Dissertation

description: Raw input file in csv format for eight Niche Mapper microclimate models
DOI: 10.6084/m9.figshare.12455828.v3
title: Biophysical model inputs - Dissertation

description: Niche Mapper biophysical model inputs for 13 species in 8 different environments.
DOI: 10.6084/m9.figshare.12455828.v4
title: Biophysical model inputs - Dissertation

description: Niche Mapper biophysical model inputs for 13 species in 8 different environments.
DOI: 10.6084/m9.figshare.12453929
title: Experiment 1.xlsx

description: Data of Experiment 1<br>
DOI: 10.6084/m9.figshare.12453929.v1
title: Experiment 1.xlsx

description: Data of Experiment 1<br>
DOI: 10.6084/m9.figshare.12453920
title: Mixotrophic scrippsielloid dinoflagellates prey on tintinnid ciliates

description: Dinoflagellates can serve as predators or parasites of tintinnid ciliates. Known predators feed on the ciliate from outside the tintinnid lorica, while parasites either grow in the host cytoplasm or feed inside in the lorica while attached to the outside of the host cell. Here we report mixotrophic species of <i>Scrippsiella</i> that enter the lorica to consume the ciliate zooid of <i>Helicostomella subulata</i> from Denmark and multiple tintinnid species from Korea. We contrast morphology and life-history stages of these mixotrophic predators with dinokaryote parasites of tintinnids and address phylogenetic relationships based on rDNA sequences. Mixotrophic <i>Scrippsiella</i> species sometimes attack tintinnids that are simultaneously infected by syndinean dinoflagellates, complicating study of life histories and potentially leading to confusion about trophic status and taxonomy.
DOI: 10.6084/m9.figshare.12453920.v1
title: Mixotrophic scrippsielloid dinoflagellates prey on tintinnid ciliates

description: Dinoflagellates can serve as predators or parasites of tintinnid ciliates. Known predators feed on the ciliate from outside the tintinnid lorica, while parasites either grow in the host cytoplasm or feed inside in the lorica while attached to the outside of the host cell. Here we report mixotrophic species of <i>Scrippsiella</i> that enter the lorica to consume the ciliate zooid of <i>Helicostomella subulata</i> from Denmark and multiple tintinnid species from Korea. We contrast morphology and life-history stages of these mixotrophic predators with dinokaryote parasites of tintinnids and address phylogenetic relationships based on rDNA sequences. Mixotrophic <i>Scrippsiella</i> species sometimes attack tintinnids that are simultaneously infected by syndinean dinoflagellates, complicating study of life histories and potentially leading to confusion about trophic status and taxonomy.
DOI: 10.6084/m9.figshare.12453695
title: Supp. data for Perret et al. (2020)

description: Supp. data for Perret et al. (2020)
DOI: 10.6084/m9.figshare.12453917.v2
title: Molecular phylogeny, taxonomic relationships and North American distribution of <i>Conchophthirus</i> (Conchophthiridae, Scuticociliatia)

description: <i>Conchophthirus curtus</i> is a scuticociliate found in the mantle cavity of unionid bivalve mussels; it is considered by most to be an endocommensal. It was previously redescribed and its morphogenesis has been carefully defined and evaluated. <i>Conchophthirus</i> stomatogenesis along with its enigmatic deep kinetosomal unit as compared with other scuticociliates, peniculines, and peritrichs suggested possible homologies and affinities. Thus, a comparison of <i>Conchophthirus</i> with common molecular markers to all other ciliates was a goal of this study. We collected <i>Conchophthirus</i> spp. in California from two unionid bivalve hosts: <i>Anodonta californiensis</i> in the Pit River and Lake Merced, and <i>Margaritifera falcata</i> from the Trinity River. The ciliates analyzed were predominantly <i>C. curtus</i> although other conchophthirids were present. The small subunit rRNA and the cytochrome <i>c</i> oxidase subunit 1 genes were sequenced. Phylogenetic analyses of these data were analyzed and maximum likelihood for the small submit rRNA dataset and neighbor-joining for the <i>cytochrome c oxidase subunit 1</i> dataset. The cytochrome c oxidase subunit 1 sequences obtained from <i>M. falcata</i> populations were virtually identical. The analysis placed these sequences with 96% bootstrap support as sister to <i>Dexiotricha</i> sp. The small submit rRNA sequences obtained from populations from both hosts were almost identical, and they showed them to be sister, with 99% support to two unpublished sequences from Chinese populations of <i>Conchophthirus cucumis</i> and <i>C. lamellidens</i>, and sister to a <i>Dexiotricha</i> sp. These data and their analyses confirm <i>Conchophthirus</i> to be a scuticociliate, but not closely related to either philasterine or pleuronematine scuticociliates nor the peniculines or peritrichs. Further analysis awaits additional data. The North American distribution of <i>Conchophthirus</i>, niche analyses, and potential homologous structures are discussed as well as the use of these endocommensals as indicators of water quality and pollution.
DOI: 10.6084/m9.figshare.12453695.v1
title: Supp. data for Perret et al. (2020)

description: Supp. data for Perret et al. (2020)
DOI: 10.6084/m9.figshare.12453917.v3
title: Molecular phylogeny, taxonomic relationships and North American distribution of <i>Conchophthirus</i> (Conchophthiridae, Scuticociliatia)

description: <i>Conchophthirus curtus</i> is a scuticociliate found in the mantle cavity of unionid bivalve mussels; it is considered by most to be an endocommensal. It was previously redescribed and its morphogenesis has been carefully defined and evaluated. <i>Conchophthirus</i> stomatogenesis along with its enigmatic deep kinetosomal unit as compared with other scuticociliates, peniculines, and peritrichs suggested possible homologies and affinities. Thus, a comparison of <i>Conchophthirus</i> with common molecular markers to all other ciliates was a goal of this study. We collected <i>Conchophthirus</i> spp. in California from two unionid bivalve hosts: <i>Anodonta californiensis</i> in the Pit River and Lake Merced, and <i>Margaritifera falcata</i> from the Trinity River. The ciliates analyzed were predominantly <i>C. curtus</i> although other conchophthirids were present. The small subunit rRNA and the cytochrome <i>c</i> oxidase subunit 1 genes were sequenced. Phylogenetic analyses of these data were analyzed and maximum likelihood for the small submit rRNA dataset and neighbor-joining for the <i>cytochrome c oxidase subunit 1</i> dataset. The cytochrome c oxidase subunit 1 sequences obtained from <i>M. falcata</i> populations were virtually identical. The analysis placed these sequences with 96% bootstrap support as sister to <i>Dexiotricha</i> sp. The small submit rRNA sequences obtained from populations from both hosts were almost identical, and they showed them to be sister, with 99% support to two unpublished sequences from Chinese populations of <i>Conchophthirus cucumis</i> and <i>C. lamellidens</i>, and sister to a <i>Dexiotricha</i> sp. These data and their analyses confirm <i>Conchophthirus</i> to be a scuticociliate, but not closely related to either philasterine or pleuronematine scuticociliates nor the peniculines or peritrichs. Further analysis awaits additional data. The North American distribution of <i>Conchophthirus</i>, niche analyses, and potential homologous structures are discussed as well as the use of these endocommensals as indicators of water quality and pollution.
DOI: 10.6084/m9.figshare.12453509
title: Proteome KEGG pathways

description: KEGG pathways as assigned to proteomic data using eggNOG-mapper.
DOI: 10.6084/m9.figshare.12453521
title: UKMOG keratitis Pseudomonas aeruginosa isolate list

description: Information on the origins of UGMOG keratitis isolates used in this study
DOI: 10.6084/m9.figshare.12453500
title: Genes with differential expression (sample C3 removed)

description: Genes with differential expression in pre-treated vs. control conditions (sample C3 removed)
DOI: 10.6084/m9.figshare.12453509.v1
title: Proteome KEGG pathways

description: KEGG pathways as assigned to proteomic data using eggNOG-mapper.
DOI: 10.6084/m9.figshare.12453488
title: Proteins with differential abundance (sample C5 removed)

description: All proteins identified has having differential abundance between pre-treated and control conditions.
DOI: 10.6084/m9.figshare.12453488.v1
title: Proteins with differential abundance (sample C5 removed)

description: All proteins identified has having differential abundance between pre-treated and control conditions.
DOI: 10.6084/m9.figshare.12453500.v2
title: Genes with differential expression (sample C3 removed)

description: Genes with differential expression in pre-treated vs. control conditions (sample C3 removed)
DOI: 10.6084/m9.figshare.12453395
title: Data supplement.zip from Tip dating supports novel resolutions of controversial relationships among early mammals

description: The estimation of the timing of major divergences in early mammal evolution is challenging due to conflicting interpretations of key fossil taxa. One contentious group is Haramiyida, the earliest members of which are from the Late Triassic. Many phylogenetic analyses have placed haramiyidans in a clade with multituberculates within crown Mammalia, thus extending the minimum divergence date for the crown group deep into the Triassic. A second taxon of interest is the eutherian <i>Juramaia</i> from the Middle-Late Jurassic Yanliao Biota, which is morphologically very similar to eutherians from the Early Cretaceous Jehol Biota and implies a very early origin for therian mammals. Here, we apply Bayesian tip-dating phylogenetic methods to investigate these issues. Tip dating firmly rejects a monophyletic Allotheria (multituberculates and haramiyidans), which are split into three separate clades, a result not found in any previous analysis. Most notably, the Late Triassic <i>Haramiyavia</i> and <i>Thomasia</i> are separate from the Middle Jurassic euharamiyidans. We also test whether the Middle–Late Jurassic age of <i>Juramaia</i> is ‘expected’ given its known morphology by assigning an age prior without hard bounds. Strikingly, this analysis supports an Early Cretaceous age for <i>Juramaia</i>, but similar analyses on twelve other mammaliaforms from the Yanliao biota return the correct, Jurassic age. Our results show that analyses incorporating stratigraphic data can produce results very different from other methods. Early mammal evolution may have involved multiple instances of convergent morphological evolution (e.g. in the dentition), and tip dating may be a method uniquely suitable to recognizing this due to the incorporation of stratigraphic data. Our results also confirm that <i>Juramaia</i> is anomalous in exhibiting a much more derived morphology than expected given its age, which in turn implies very high rates of evolution at the base of therian mammals.
DOI: 10.6084/m9.figshare.12453500.v1
title: Genes with differential expression

description: Genes with differential expression in pre-treated vs. control conditions (sample C3 removed)
DOI: 10.6084/m9.figshare.12453371
title: Factors influencing participation of children with disabilities in home activities

description: The correlation between each PEM-CY score and the child's age, height, weight, and parents’ ages were examined by the calculation of Spearman's rank correlation coefficients. Mann-Whitney's U-test was used to perform comparisons between groups with high and low gross motor capacity and between groups with and without medical care. <br>Multiple regression analysis (forced entry method) was conducted. The independent variables were those items that were significantly different or significantly correlated in the previous statistics. The PEM-CY score (number of items, frequency, and level of involvement) was the dependent variable. In this case, medical care was added to the independent variables for each item. High and low gross motor function and the presence of medical care were transformed into dummy variables.
DOI: 10.6084/m9.figshare.12453374
title: Daily SST, maximum temperature, and minimum temperature at nine wave-exposed intertidal locations along the Atlantic coast of Nova Scotia, Canada (2014-2019)

description: This file gives the values of daily sea surface temperature (SST), maximum temperature (MaxT), and minimum temperature (MinT) recorded at nine wave-exposed intertidal locations along the Atlantic coast of Nova Scotia, Canada, between April 2014 and October 2019. From north to south, these locations are: Glasgow Head (L1), Deming Island (L2), Tor Bay Provincial Park (L3), Barachois Head (L4), Sober Island (L5), Duck Reef (L6), Western Head (L7), West Point (L8), and Baccaro Point (L9).
DOI: 10.6084/m9.figshare.12453395.v1
title: Data supplement.zip from Tip dating supports novel resolutions of controversial relationships among early mammals

description: The estimation of the timing of major divergences in early mammal evolution is challenging due to conflicting interpretations of key fossil taxa. One contentious group is Haramiyida, the earliest members of which are from the Late Triassic. Many phylogenetic analyses have placed haramiyidans in a clade with multituberculates within crown Mammalia, thus extending the minimum divergence date for the crown group deep into the Triassic. A second taxon of interest is the eutherian <i>Juramaia</i> from the Middle-Late Jurassic Yanliao Biota, which is morphologically very similar to eutherians from the Early Cretaceous Jehol Biota and implies a very early origin for therian mammals. Here, we apply Bayesian tip-dating phylogenetic methods to investigate these issues. Tip dating firmly rejects a monophyletic Allotheria (multituberculates and haramiyidans), which are split into three separate clades, a result not found in any previous analysis. Most notably, the Late Triassic <i>Haramiyavia</i> and <i>Thomasia</i> are separate from the Middle Jurassic euharamiyidans. We also test whether the Middle–Late Jurassic age of <i>Juramaia</i> is ‘expected’ given its known morphology by assigning an age prior without hard bounds. Strikingly, this analysis supports an Early Cretaceous age for <i>Juramaia</i>, but similar analyses on twelve other mammaliaforms from the Yanliao biota return the correct, Jurassic age. Our results show that analyses incorporating stratigraphic data can produce results very different from other methods. Early mammal evolution may have involved multiple instances of convergent morphological evolution (e.g. in the dentition), and tip dating may be a method uniquely suitable to recognizing this due to the incorporation of stratigraphic data. Our results also confirm that <i>Juramaia</i> is anomalous in exhibiting a much more derived morphology than expected given its age, which in turn implies very high rates of evolution at the base of therian mammals.
DOI: 10.6084/m9.figshare.12453320
title: Scaffold proteomics INSR_TIME_COURSE.xls

description: See notesINSR IP and MS data outputMascot and Scaffold analysis output as spectral counts
DOI: 10.6084/m9.figshare.12453371.v2
title: Factors influencing participation of children with disabilities in home activities

description: The correlation between each PEM-CY score and the child's age, height, weight, and parents’ ages were examined by the calculation of Spearman's rank correlation coefficients. Mann-Whitney's U-test was used to perform comparisons between groups with high and low gross motor capacity and between groups with and without medical care. <br>Multiple regression analysis (forced entry method) was conducted. The independent variables were those items that were significantly different or significantly correlated in the previous statistics. The PEM-CY score (number of items, frequency, and level of involvement) was the dependent variable. In this case, medical care was added to the independent variables for each item. High and low gross motor function and the presence of medical care were transformed into dummy variables.
DOI: 10.6084/m9.figshare.12453287
title: SPSS

description: clinical isolates initially identified as <i>Pseudomonas aeruginosa</i>, were obtained from Soba Teaching Hospital, Police’s Hospital, National Laboratory for Public Health, Ear Nose Throat Hospital and Military Hospital in Khartoum State–Sudan. The samples were collected from patients suffering from urinary tract infections, respiratory tract infections, blood infections, wound and ear infections. Data was collected from hospitals records. This data containing file contain the data of all samples included in this study from identification, sensitivity testing until different beta-lactamases genes detection.
DOI: 10.6084/m9.figshare.12453320.v1
title: Scaffold proteomics INSR_TIME_COURSE.xls

description: See notesINSR IP and MS data outputMascot and Scaffold analysis output as spectral counts
DOI: 10.6084/m9.figshare.12453371.v1
title: Factors influencing participation of children with disabilities in home activities

description: The correlation between each PEM-CY score and the child's age, height, weight, and parents’ ages were examined by the calculation of Spearman's rank correlation coefficients. Mann-Whitney's U-test was used to perform comparisons between groups with high and low gross motor capacity and between groups with and without medical care. <br>Multiple regression analysis (forced entry method) was conducted. The independent variables were those items that were significantly different or significantly correlated in the previous statistics. The PEM-CY score (number of items, frequency, and level of involvement) was the dependent variable. In this case, medical care was added to the independent variables for each item. High and low gross motor function and the presence of medical care were transformed into dummy variables.
DOI: 10.21954/ou.rd.12453221
title: North Rupununi Orthomosaic_P6_13 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of sixth block of Pirara Creek headwaters, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 13th of February 2020.
DOI: 10.21954/ou.rd.12453248
title: North Rupununi Orthomosaic_P7_13 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of seventh block of Pirara Creek headwaters, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 13th of February 2020.
DOI: 10.21954/ou.rd.12453248.v1
title: North Rupununi Orthomosaic_P7_13 02 2020

description: 5 cm resolution orthomap (GeoTiff format) of seventh block of Pirara Creek headwaters, North Rupununi, 2km x 2km quadrant. Drone survey was carried out on the 13th of February 2020.