cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/p2msxxwc5r
title: Correlation Between MRI Findings of Pituitary Gland and Prolactin Level Among Hyperprolactinemia Adult Female Saudi Patients in Rural Areas: A Retrospective Multicentric Study

description: A retrospective multicentric study including 4 regions (Alkarj, Afif, Najran, and Riyadh) from western Saudia Arabia between July 2020 and September 2023 including 168 female patients with abnormal prolactin levels who underwent brain MRI for the pituitary gland evaluation. The study excluded patients who had a pacemaker, aneurysm clip, orbital metallic foreign body, prior pituitary disease, severe renal insufficiency, liver cirrhosis, uncompensated primary hypothyroidism, and females on hyperprolactinemic drugs. The correlation between hyperprolactinemia and MRI findings was investigated and analyzed. A receiver operating characteristic (ROC) curve analysis was utilized to determine a serum prolactin threshold value for diagnosing pituitary adenoma in hyperprolactinemic individuals.
DOI: 10.6084/m9.figshare.12869966.v1
title: files_for_figshare_Galen_2020.zip

description: This repository contains files and codes needed to replicate the analyses of Galen et al. "Phylogenomics from transcriptomic “bycatch” clarify the origins and diversity of avian trypanosomes in North America"
DOI: 10.6084/m9.figshare.3561207.v1
title: Appendix A. Supplementary methods: field site locations and description, Lepidoptera rearing, analyses of herbivore reduction efficacy and broken flight trap bias.

description: Supplementary methods: field site locations and description, Lepidoptera rearing, analyses of herbivore reduction efficacy and broken flight trap bias.
DOI: 10.17632/3hnz5wdvzr
title: Multem 3: An updated and revised version of the program for transmission and band calculations of photonic crystals

description: We present here Multem 3, an updated and revised version of Multem 2, which syntax has been upgraded to Fortran 2018, with the source code being divided into modules. Multem 3 is equipped with LAPACK, the state-of-the art Faddeeva complex error function routine, and the Bessel function package AMOS. The amendments significantly improve both the speed, convergence, and precision of Multem 2. Increased stability allows to freely increase the cut-off value LMAX on the number of spherical vector wave functions and the cut-off value RMAX controlling the maximal length of reciprocal vectors taken into consideration. An immediate bonus is that Multem 3 can be reliably used to describe bound states in the continuum (BICs). To ensure convergence of the layer coupling scheme, it appears that appreciably larger values of convergence paramaters LMAX and RMAX are required than those reported in numerous published work in the past using Multem 2. We hope that Multem 3 will become a reliable and fast alternative to generic commercial software, such as COMSOL Multiphysics, CST Microwave Studio, or Ansys HFSS, and that it will become the code of choice for various optimization tasks for a large number of research groups. The improvements concern the core part of Multem 2, which is common to the extensions of Multem 2 for acoustic and elastic multiple scattering and to the original layer-Kohn-Korringa-Rostocker (LKKR) code. Therefore, the enhancements presented here can be readily applied to the above codes as well.

The previous version of this program may be found at https://doi.org/10.1016/S0010-4655(00)00131-4.
DOI: 10.17632/ksks9dwpcp
title: Sediment dynamics in Patagonian Gulf

description: The dataset contains textural parameters and location of surface sediment samples from an Argentina Patagonia Gulf (San José Gulf), used to infer sediment transports and bottom dynamics. This is a semi-enclosed basin with two contrasting hydrodynamic domains subjected to strong wind conditions and where a thermal frontal system occur during the warm season.
DOI: 10.17632/ydbcpb73t2
title: District Heating Database

description: District Heating Data
DOI: 10.6084/m9.figshare.13220762.v1
title: Comparative study of SARS-CoV-2 proteins and antigenic proteins in BCG, OPV, MMR and other vaccines: evidence of possible putative protective effect

description: In this paper, we attempt to investigate the putative implication of BCG, OPV, MMR vaccines and nine other vaccines in the protection against COVID-19. We used a combination of bioinformatic tools to compare amino-acid sequences of the main antigenic proteins in the investigated vaccines and SARS-CoV-2 proteins and to predict the immunogenicity of similar identified patterns.
DOI: 10.6084/m9.figshare.24448666.v1
title: Supplementary Material for: Efficacy of hysteroscopy in improving fertility outcomes in women undergoing assisted reproductive technique: a systematic review and meta-analysis of randomized controlled trials.

description: Introduction: Usefulness of hysteroscopy before assisted reproductive technique (ART) was considered debatable. However, over the last decade, several new trials were added to available literature. We aimed to assess the impact of diagnostic and operative hysteroscopy on reproductive outcomes of infertile women with and without intrauterine abnormalities. Materials and Methods: MEDLINE, Scopus, Scielo, EMBASE, Cochrane Library at CENTRAL, PROSPERO, CINAHL, grey literature, conference proceedings, and international controlled trials registries were searched without temporal, geographical, or language restrictions. Randomized controlled trials (RCTs) of infertile women comparing hysteroscopy versus no hysteroscopy prior to the first ART or after at least one failed attempt were included. RCTs of infertile women with intrauterine pathology comparing diagnostic vs operative hysteroscopy were included in separate analysis. Random-effect meta-analysis was conducted according to PRISMA guidelines. GRADE and Cochrane criteria were used for quality of evidence and risk of bias assessment. Primary outcome was live birth rate (LBR). Secondary outcomes were clinical pregnancy (CPR) and pregnancy loss rate (PLR). Results: Fifteen studies (5038 women) were included. Compared to no hysteroscopy before first or after failed ART attempts, moderate quality evidence showed that hysteroscopy increased the LBR (relative risk (RR) 1.24, 95% confidence interval (CI) 1.09-1.43, I2=21%), confirmed by subgroup analysis for women with failure after one or more ART cycles (RR 1.43, 95% CI 1.19– 1.72, I2=0%) but not before the first ART. Moderate quality evidence showed that it increased the CPR (RR 1.36, 95% CI 1.18–1.57; I2=51%), confirmed in subgroup analysis for both implantation failure (RR 1.40, 95% CI 1.12–1.74, I2=52%) and before first ART (RR 1.32, 95% CI 1.11–1.57, I2=42%). Low-quality data suggest that operative hysteroscopy increases CPR when used to treat intrauterine pathologies (RR 2.13, 95% CI 1.56 – 2.92, I2=0%). Conclusions: Although moderate quality evidence supports performing hysteroscopy before ART in women with history of implantation failure, hysteroscopic evaluation of uterine cavity should be considered a first-line technique in all infertile women undergoing ART. Additional high-quality RCTs are still needed, particularly to assess yield during couple’s initial evaluation even before ART is considered. PROSPERO Registration number: CRD42023363344
DOI: 10.6084/m9.figshare.4763326.v1
title: Supplementary Material for: Antimicrobial Susceptibility among European Gram-Negative and Gram-Positive Isolates Collected as Part of the Tigecycline Evaluation and Surveillance Trial (2004-2014)

description: <i>Background:</i> European centers (n = 226) involved in the Tigecycline Evaluation and Surveillance Trial (TEST, 2004-2014) submitted data and bacterial isolates. <i>Methods:</i>Minimal inhibitory concentrations and susceptibility were determined using Clinical and Laboratory Standards Institute methods and European Committee on Antimicrobial Susceptibility Testing breakpoints. <i>Results:</i> The rates of the following resistant pathogens increased from 2004 to 2014: extended-spectrum β-lactamase (ESBL)-positive <i>Escherichia coli</i> (from 8.9 to 16.9%), multidrug-resistant <i>Acinetobacter baumannii</i> complex (from 15.4 to 48.5%), and ESBL-positive <i>Klebsiella pneumoniae</i>(from 17.2 to 23.7%). The rate of methicillin-resistant <i>Staphylococcus aureus</i> was 27.5% in 2004 and 28.9% in 2014. Resistance to the carbapenems (imipenem and meropenem) was 37.4 and 14.5% for <i>A. baumannii</i> complex and <i>Pseudomonas aeruginosa</i>, respectively. Carbapenem resistance was ≤4.3% among the Enterobacteriaceae and 0.2% against <i>Streptococcus pneumoniae.</i> The resistance to tigecycline ranged between 7.4% against ESBL-producing <i>K. pneumoniae </i>and 0.0% against <i>S. aureus.</i><i>Conclusions:</i> The carbapenems and tigecycline were active against Enterobacteriaceae. Agents with activity against <i>A. baumannii</i> complex and <i>P. aeruginosa</i> are limited. The carbapenems, tigecycline, linezolid, and vancomycin were active against Gram-positive organisms.
DOI: 10.17632/47gv4vwb4h
title: Managerial Controls and Cooperative Networks in Business Model Innovation

description: Appendix. Questionnaire
DOI: 10.6084/m9.figshare.19312583.v1
title: scDRS_data_release_030122

description: Data files used for reproducing main results of the paper (revision 1).<br>- downstream_file.zip: scDRS gene-level correlation on the TMS FACS data for 74 diseases/traits.<br>- gold_standard_gs.zip: drug targets and Mendelian disease genes, consistent with Supp. Table<br>- score_file.zip: (1) scDRS score files for TMS FACS + hepatocyte signatures, (2) scDRS score files for Zeisel et al. 2015 (brain traits + inferred spatial coordinates).<br><br>- gene_annotation.zip: (1) MAGMA p-values for all genes and the 74 diseases/traits, (2) mouse-human homologs, (3) cell-cycle signatures in Macosko et al. 2015 Cell. <br><br>- gs_file.zip: (1) .gs file (with GWAS MAGMA z-score weights) for the 74 diseases/traits (magma_10kb_top1000_zscore.74_traits.rv1.gs), (2) batch .gs files for the 75 diseases/traits (magma_10kb_top1000_zscore.75_traits.batch) (including an additional file for PASS_BIP_Stahl2019 used in the initial submission)<br><br>- single_cell_data.zip: (1) reprocessed TMS FACS T cell data (./tms_proc/tcell.facs.annot.h5ad), (2) reprocessed TMS FACS hepatocytes data (./tms_proc/hep.facs_annot.h5ad), (3) Zeisel et al. 2015 processed data ./zeisel_2015<br>- sumstats.zip: GWAS summary statistics of the 74 diseases/traits<br>- tabula_muris_senis.zip: TMS FACS scRNA-seq data<br>- supp_table.zip: (1) disease information (trait_info.tsv), consistent with Supp. Table. (2) all supp. tables (supp_tables.xlsx), same as Supp. Table in the paper.
DOI: 10.6084/m9.figshare.27685470.v1
title: 16S rRNA sequences of <i>M.sal </i>gut microbiota

description: Largemouth bass (<i>Micropterus salmoides</i>) are important economic fish in freshwater aquaculture. Our research was focus on screening biomarkers closely related to diseases from gut microbiota, that would provide important targets for biological control of largemouth bass, and contribute to the sustainable development of aquaculture industry.
DOI: 10.6084/m9.figshare.9201770.v3
title: DepMap 19Q3 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 625 cell lines, the RNAseq data includes 1,210 cell lines, and the copy number data includes 1,657 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Additional Achilles processing information is published here https://www.biorxiv.org/content/10.1101/720243v1.full. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>version 2: uploaded a new version of CCLE_gene_cn.csv to correctly reflect released cell lines.<br>version 3: uploaded a new version of CCLE_gene_cn.csv that has the log2 transform correctly applied to it and to removed duplicate cell lines.<br>
DOI: 10.17632/g8ckr9zxbx
title: Watkins et. al. 2024 JEM Extended Data

description: Extended data for Watkins et. al. JEM 2024.
DOI: 10.17632/tzwtcp7jvh
title: Datasets of "Fixed Capital and Growth Imperatives: Is Commercial Aviation Trapped in a Treadmill?"

description: Financial Data
This study sources financial data from Wharton Research Data Services (WRDS), specifically the Compustat Fundamentals database. Compustat North America covers U.S. and Canadian publicly traded companies, while Compustat Global includes firms outside North America. The dataset includes historical financial data from 1950 onward.

Companies in the commercial aviation sector were identified using WRDS’s “Find Companies” tool and categorized into five sub-sectors: Airplane Manufacturers, Suppliers, Maintenance, Airlines, and Airport Operators. 
The selected financial variables include:
Capital Expenditures (CAPX): Funds used for additions to property, plant, and equipment (PPE), excluding acquisitions.
Property, Plant, and Equipment - Total (PPEGT): Gross valuation of tangible fixed assets used in operations.
Earnings Before Interest, Taxes, Depreciation, and Amortization (EBITDA): A measure of operational profitability before reinvestment in fixed capital.
The financial data reveals a consistent rise in capital expenditures and tangible fixed assets across five commercial aviation sub-sectors, reflecting increased investments in infrastructure and equipment. EBITDA has also grown significantly, with airlines and maintenance companies experiencing the highest surges, indicating that firms must generate larger operational surpluses to sustain expanding fixed capital investments.
To adjust all financial data to 2024 constant US dollars, the Producer Price Index (PPI) from the Federal Reserve Economic Data (FRED) database was used. The PPI, dating back to 1912, reflects wholesale price changes, ensuring financial figures remain comparable over time.

Trade Data
Global trade data was obtained from the UN Comtrade Database using the Harmonized System (HS) classification for exports. Selected categories highlight aviation’s material footprint beyond fuel consumption:

Aircraft tires (HS 401130) – Maintenance and wear-related material flows.
Aircraft engines (HS 840710) – Technological propulsion components.
Propellers and rotors (HS 880310) – Key aerodynamic components.
Aircraft seats (HS 940110) – Passenger-related infrastructure.

The resource data highlights a sharp rise in global exports of key aircraft components from 1988 to 2023. Aircraft seating saw the highest growth, increasing 33-fold, while aircraft tires and propellers expanded 21-fold. Piston engine exports rose 14-fold. This surge reflects rising global demand for aviation parts, driven by fleet expansion, maintenance needs, and the growing complexity of aircraft systems.
DOI: 10.25573/data.16828063.v1
title: (high-temp) No 6. Beta diversity (16S rRNA/ITS) Output

description: <b>Output files from the No 6. Beta diversity Workflow</b> page of the SWELTR high-temp study. In this workflow, we tested multiple distance metrics to assess beta diversity between temperature treatments. The workflow is split into two parts. <br><br><b>beta_wf_part_1.rdata</b>: Part 1 contains all variables and objects (for 16s rRNA and ITS) from beta dispersion calculations and significant tests. To see the Objects, in R run load("<i>beta_wf_part_1.rdata", verbose=TRUE</i>)<br><br><b>beta_wf_part_2.rdata</b>: Part 2 contains all variables and objects (for 16s rRNA and ITS) from calculating distances as well as plots for ordination, within-group variation, and between-group variation. To see the Objects, in R run load("<i>beta_wf_part_2.rdata", verbose=TRUE</i>)<br><br>Source code for the workflow can be found here:<br>https://github.com/sweltr/high-temp/blob/master/beta.Rmd<br><br><br>
DOI: 10.48420/28191017.v2
title: Impact of Teaching Medical Students about Obesity in South Asians

description: Background: Obesity is a multifaceted condition influenced by genetic, lifestyle, and cultural factors. The prevalence of obesity has risen globally, with distinct challenges faced by South Asian populations in the UK, due to genetic predispositions and dietary shifts. This study evaluated the impact of an educational intervention designed for medical students to increase understanding of obesity in the South Asian community.Approach: Participants were recruited via the medical school online platform and signed written consent forms. The study did not require ethics approval. Participants completed a Likert confidence scale questionnaire before the small group teaching intervention, and then after it, to assess the impact of the session. Written free text comments after the session illustrated participant thoughts on the intervention and how well they felt the medical school taught on ethnic minority health. The dataset is a spreadsheet that records participants' responses to questionnaireEvaluation: The intervention significantly improved participant confidence in understanding and awareness of obesity in the South Asian community. Free text comments highlighted positive engagement and suggested areas for improvement. All participants believed their medical school lacked sufficient teaching on obesity in ethnic minorities and expressed an ardent desire for more teaching in this area.Implications: This study underscores the need for tailored undergraduate medical teaching on obesity in diverse ethnic groups, particularly South Asians. It highlights the inadequacies of a one-size-fits-all approach in addressing obesity within ethnic minority communities. Future work should explore the readiness of medical students across the UK to study obesity and the management of it in ethnic minorities.The data set includes the consent form and feedback form used for the study, as well as anonymised feedback data from the study. The Wilcoxon signed rank test is also included, as well as evidence that an ethics application was not needed for the study.
DOI: 10.6084/m9.figshare.19614657.v1
title: Transition1x

description: This dataset is constructed by running NEB on 12000 reactions using the wb97x functional and the 6-31G(d) basis set. DFT calculations have been saved and are intended for training ML models to work in transition state regions of chemical space. <br> Dataloaders and example scripts are availble in https://gitlab.gbar.dtu.dk/sure/Transition1x
DOI: 10.6084/m9.figshare.26892868.v1
title: Dataset used in Latent Diffusion Model for Conditional Reservoir Facies Generation

description: Dataset used in Latent Diffusion Model for Conditional Reservoir Facies Generation
DOI: 10.6084/m9.figshare.26968093.v1
title: 240909_Data mastersheet.csv

description: This study elucidated the clinical and radiologic characteristics of orbital schwannoma and cavernous venous malformation, exploring potential significant differences in their MRI and CT features, including ADC in DWI and CT values. This study also aimed to report the incidence of complete excision versus subtotal resection and recurrence.
DOI: 10.17632/c6882kknhd
title: Dataset of a "Multicenter field evaluation of real time PCR kit prototype for early diagnosis of congenital Chagas disease”

description: The file “FONARSEC Study_public data base.cvs” contains all the variables used in the analysis of the manuscript “Multicenter Field Evaluation of Real time PCR Kit prototype for Early Diagnosis of Congenital Chagas disease”. The data set is structured with one record per each T. cruzi infected mother-newborn binomial screened. Each of the 622 binomial screened was assigned an ID, which is the first variable included in the data set, and subsequently variables on binomials characteristics of interest and laboratory results for the 559 recruited binomials. Variables were obtained from: i) study forms to collect information from clinical records or participants answers, ii) specific data forms for laboratory results, and iii) created from the previous variables. In the file “Fonarsec Study_Data dictionary.pdf” is detailed the information on each variable. The analysis of this data set was done with Stata version 11.2, and some complementary analysis in EpiDat version 3.1.
DOI: 10.17632/y5g3kffbg9
title: AAV plasminds sequences-Optimized protocols for efficient gene editing in hepatocytes in vivo using CRISPR-Cas9 technology 

description: The sequences of the plasmids constructed in the protocol
DOI: 10.6084/m9.figshare.21087592.v1
title: Load-bearing capacity and critical water content of the coffee plantation soil with management in full sun and shaded

description: ABSTRACT New management practices applied to coffee crops may influence the soil’s capacity to tolerate vertical stresses. This paper aimed to evaluate the influence of two coffee crop management systems on the soil load-bearing capacity and critical soil water content to agricultural machinery traffic. This study was performed in the experimental area of the Federal Institute of the Southeast of Minas Gerais - Rio Pomba college, in Rio Pomba city, Minas Gerais, Brazil. Dystrophic Red-Yellow Oxisol (Latossolo Vermelho-Amarelo distrófico) (LVA7) with clayed texture predominating in the experimental unit. Undisturbed soil samples were collected from layers of 0.00-0.03, 0.12-0.15 and 0.27-0.30 m, randomly, in the center of the interrows of coffee plants (Coffea arabica L.) in monoculture plots under traditional management (in full sun) and in the plots of coffee plants intercropped with gliricidia (Gliricidia sepium) (shaded) to estimate pre-consolidation pressures, through uniaxial compression tests and adjustment of soil load-bearing capacity models. The average and maximum normal stresses applied to the soil and the vertical stress distribution of three agricultural tractors used in mechanized farming operations were estimated, and the critical soil water content to the traffic of these tractors was determined for both treatments, aiding in the decision-making process regarding additional compaction risks in the area. Cultivation of gliricidia in consortium with coffee did not influence the soil load-bearing capacity. The soil layer of 0.12-0.15 m was the most vulnerable to vertical stresses in both treatments. Agricultural tractors Agrale 4100, MF 265 and MF 275 presented values of vertical stresses of 335.76, 200.24 and 245.55 kPa, respectively, and the soil water content for the traffic of agricultural machines without plastic deformation was higher in the coffee plants in full sun for all studied depths.