cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5qv3c74d
title: MassIVE MSV000089458 - Microglial Lipidome and Metabolome with Amyloid Beta Exposure
title: Microglia are specialized immune cells in the brain that eliminate misfolded protein deposits and cellular debris by phagocytosis. In Alzheimers disease, microglia clear the amyloid beta aggregates during disease onset but are unable to phagocytose them from the tissue environment during the late stages of the disease contributing to chronic inflammation. Lipids and metabolites orchestrate critical regulation events within the cell or by their secretion into the cellular microenvironment, yet, the effect of abeta on microglial lipidome and metabolome has not been well characterized till date. In this study, we used Multiple-Reaction Monitoring (MRM)-profiling to evaluate, for the first time, the lipid and metabolite changes in abeta-activated microglia that were isolated from mouse brains over 24 hours. We also developed a new bioinformatics pipeline to identify the statistically significant lipids and metabolites in abeta-treated microglial cells and condition medium that were differentially regulated compared to the vehicle controls. Triacylglycerides and phosphatidylglycerols were the most abundant lipid classes, whereas long-chain free fatty acids with 26 to 30 acyl chain carbon atoms were consistently decreased with abeta-treatment over time. Further, 42 significant metabolites were identified in cells. L-2-aminobutyric acid, hydroxybutyric acid, inosine, alanine, etc. were differentially regulated with abeta treatment suggesting changes in alanine, aspartate and glutamate metabolism, and arginine biosynthesis pathways. Selected metabolites were identified in the microglial conditioned medium, including stearic acid, tryptophan, palmitic acid, etc. that have been shown to affect the phagocytic properties of peripheral macrophages and may also play a role in the microglial phagocytic response. Thus, characterizing the lipidome and metabolome of microglia due to abeta identifies critical molecules involved in their immune response and highlight the molecular mechanisms of phagocytic function as well as dysfunction associated with AD.
DOI: 10.25318/3510020401-fra
title: Admissions aux services correctionnels pour les jeunes par groupe de minorité visible et sexe

description: Ce tableau représente les admissions aux services correctionnels pour les jeunes par groupe de minorité visible et sexe, et contient des nouvelles données pour l'exercice 2020-2021.
DOI: 10.5281/zenodo.6539636
title: A tempοral Deep Convolutional Neural Network model on Sentinel-1 Image Time Series for pixel-wise Flood Classification (dataset)

description: This is a dataset which has been designed to be used for flood time series classification. Each time series is annotated as flood or no-flood and represents a pixel-wise time series derived from stack of Sentinel-1 IW GRD images that have been pre-processed according to https://doi.org/10.5281/zenodo.6510223.
DOI: 10.5281/zenodo.6539635
title: A tempοral Deep Convolutional Neural Network model on Sentinel-1 Image Time Series for pixel-wise Flood Classification (dataset)

description: This is a dataset which has been designed to be used for flood time series classification. Each time series is annotated as flood or no-flood and represents a pixel-wise time series derived from stack of Sentinel-1 IW GRD images that have been pre-processed according to https://doi.org/10.5281/zenodo.6510223.
DOI: 10.6084/m9.figshare.19747600
title: Swamp_Rabbit_MaxEnt

description: Input files for MaxEnt analysis of Swamp Rabbit distribution in the Great Trinity Forest
DOI: 10.25318/9810002001-fra
title: Âge (en années), âge moyen et âge médian et genre : Canada, provinces et territoires, régions métropolitaines de recensement et agglomérations de recensement y compris les parties

description: Données sur l’âge en années, y compris l’âge moyen et l’âge médian, ainsi que le genre pour la population du Canada, des provinces et des territoires, des régions métropolitaines de recensement, des agglomérations de recensement, recensements de 2021 et 2016.
DOI: 10.5281/zenodo.6390301
title: A Comparison of LiDAR-based SLAM Systems for Control of Unmanned Aerial Vehicles

description: Datasets collected from the experiments described in the paper R. Milijas, L. Markovic, A. Ivanovic, F. Petric and S. Bogdan, "A Comparison of LiDAR-based SLAM Systems for Control of Unmanned Aerial Vehicles," <em>2021 International Conference on Unmanned Aircraft Systems (ICUAS)</em>, 2021, pp. 1148-1154, doi: 10.1109/ICUAS51884.2021.9476802. The datasets consist of ROS bags which hold the UAV and LiDAR data, and of zip files which hold only the lidar data in binary format for non-ROS users.
DOI: 10.5281/zenodo.6390300
title: A Comparison of LiDAR-based SLAM Systems for Control of Unmanned Aerial Vehicles

description: Datasets collected from the experiments described in the paper R. Milijas, L. Markovic, A. Ivanovic, F. Petric and S. Bogdan, "A Comparison of LiDAR-based SLAM Systems for Control of Unmanned Aerial Vehicles," <em>2021 International Conference on Unmanned Aircraft Systems (ICUAS)</em>, 2021, pp. 1148-1154, doi: 10.1109/ICUAS51884.2021.9476802. The datasets consist of ROS bags which hold the UAV and LiDAR data, and of zip files which hold only the lidar data in binary format for non-ROS users.
DOI: 10.25318/9810002101-eng
title: Age (in single years), average age and median age and gender: Census metropolitan areas, census agglomerations and census subdivisions

description: Data on age in single years including average age and median age and gender for the population of census metropolitan areas, census agglomerations and census subdivisions, 2021 and 2016 censuses.
DOI: 10.25318/9810002101-fra
title: Âge (en années), âge moyen et âge médian et genre : Régions métropolitaines de recensement, agglomérations de recensement et subdivisions de recensement

description: Données sur l’âge en années, y compris l’âge moyen et l’âge médian, ainsi que le genre pour la population des régions métropolitaines de recensement, des agglomérations de recensement et des subdivisions de recensement, recensements de 2021 et 2016.
DOI: 10.25318/9810002201-fra
title: Âge (en années), âge moyen et âge médian et genre : Canada, provinces et territoires, divisions de recensement et subdivisions de recensement

description: Données sur l’âge en années, y compris l’âge moyen et l’âge médian, ainsi que le genre pour la population du Canada, des provinces et des territoires, des divisions de recensement et des subdivisions de recensement, recensements de 2021 et 2016.
DOI: 10.5281/zenodo.5835916
title: ENCORE dataset Zagreb september 2021

description: Dataset of two-story building on the UNIZG campus "Borongaj". The dataset contains raw LIDAR measurements and photographs and IMU orientations acquired using an UAV.<br> Each lidar measurement also contains an estimated pose of the sensor in the global reference frame.
DOI: 10.5281/zenodo.5835915
title: ENCORE dataset Zagreb september 2021

description: Dataset of two-story building on the UNIZG campus "Borongaj". The dataset contains raw LIDAR measurements and photographs and IMU orientations acquired using an UAV.<br> Each lidar measurement also contains an estimated pose of the sensor in the global reference frame.
DOI: 10.5281/zenodo.5979564
title: Base de datos estudio hábitos de lectura y educación durante el COVID-19

description: Conjunto de datos del artículo: Análisis de los desafíos dentro del contexto de la educación y la lectura durante la pandemia, en la prensa internacional de ámbito hispánico.
DOI: 10.6084/m9.figshare.19746778
title: Data_Arthemether_Lumefantrine_Counties(1).xlsx

description: Samples of products that are used for treatment of malaria and Reproductive, Maternal, New-born and Child Health (RMNCH) collected from 17 counties in Kenya. The samples collected included AL tablets, artesunate injection, oxytocin injection and gentamicin injection.
DOI: 10.6084/m9.figshare.19746778.v1
title: Data_Arthemether_Lumefantrine_Counties(1).xlsx

description: Samples of products that are used for treatment of malaria and Reproductive, Maternal, New-born and Child Health (RMNCH) collected from 17 counties in Kenya. The samples collected included AL tablets, artesunate injection, oxytocin injection and gentamicin injection.
DOI: 10.6084/m9.figshare.19747660.v1
title: GSE131907

description: 11 tumour, 11 distant normal lung, 10 normal lymph node, and 10 metastatic brain tissue samples were obtained from LUAD patients conserving surgery without prior treatment. 7 metastatic lymph node and 4 lung tumour tissue samples from advanced stage LUAD patients were also collected.
DOI: 10.5066/p9clr26o
title: Rainbow trout reproduction data from 3 sampling trips (2018-2019) within Glen Canyon, AZ

description: These data were compiled to describe population reproductive structure of rainbow trout in the Colorado River downstream of Glen Canyon Dam, Arizona. Objective(s) of our study were to describe the population on reproductive structure of the rainbow trout population in Glen Canyon on the Colorado River and evaluate the accuracy of nonlethal methods (manual expression and ultrasonography) for assigning sex and reproductive phase. These data represent samples collected in 3 sampling trips fall in October to November 2018, February 2019, and April 2019. These data were collected in Glen Canyon, from Glen Canyon Dam to Lees Ferry on the Colorado River. Specifically, we sampled three reaches within Glen Canyon to represent the upper (A: 2.0 - 4.8 km downstream of the dam), middle (B: 8.7 ? 11.2 km), and lower (C: 18 ? 20.7 km) sections of the tailwater, representing a little more than 1/3rd of the 25-km length of Glen Canyon. These data were collected by the study authors (Crossman, Webb, and Korman) as part of ongoing USGS Trout Recruitment and Growth Dynamics sampling trips in 2018 and 2019. Rainbow trout were sampled from each sampling site on each trip and approximately equal numbers taken from each of four size classes (100-199, 200-299, 300-399, 400-499 mm fork length). Fish were measured for length and weighed and a piece of gonad tissue was preserved for histological assignment in the lab. These data can be used to describe population reproductive structure of rainbow trout, understand less invasive methods for assigning sex, and improve our understanding of how somatic growth and energetic status influence population reproductive structure, reproductive seasonality, and later recruitments.
DOI: 10.6084/m9.figshare.19747666
title: Niang et al. 2022 J. Vertebr. Biol. 2022, 71: 22015_Datasets_Tables S1 & S2

description: <strong>Table S1.</strong> Dataset at the trap line level in lowland agroecosystems of the lower delta of the River Senegal, 2008 to 2019. <strong>Table S2.</strong> Dataset at the rodent individual level in lowland agroecosystems of the lower delta of the River Senegal, 2008 to 2019.
DOI: 10.6084/m9.figshare.19747666.v1
title: Niang et al. 2022 J. Vertebr. Biol. 2022, 71: 22015_Datasets_Tables S1 & S2

description: <strong>Table S1.</strong> Dataset at the trap line level in lowland agroecosystems of the lower delta of the River Senegal, 2008 to 2019. <strong>Table S2.</strong> Dataset at the rodent individual level in lowland agroecosystems of the lower delta of the River Senegal, 2008 to 2019.
DOI: 10.48567/vk7e-fh29
title: AGO-4 Automatic Weather Station, 2019 quality-controlled observational data.
DOI: 10.5517/ccdc.csd.cc29hcck
title: CCDC 2129928: Experimental Crystal Structure Determination

description: Related Article: Małgorzata Gawrońska, Mateusz Kowalik, Joanna Duch, Katarzyna Kazimierczuk, Mariusz Makowski|2022|Polyhedron|221|115865|doi:10.1016/j.poly.2022.115865
DOI: 10.5517/ccdc.csd.cc29w9l3
title: CCDC 2141405: Experimental Crystal Structure Determination

description: Related Article: Rashid Ilmi, Danyang Zhang, Leonardo Tensi, Houda Al-Sharji, Nawal K. Al Rasbi, Alceo Macchioni, Liang Zhou, Wai-Yeung Wong, Paul R. Raithby, Muhammad S. Khan|2022|Dyes Pigm.|203|110300|doi:10.1016/j.dyepig.2022.110300
DOI: 10.6084/m9.figshare.19747726
title: Data on Monolistra pavani resistance to droughts

description: Data on tests performed directly in the field on theresistance to droughts in the isopod <em>Monolistra pavani</em>
DOI: 10.5281/zenodo.6537297
title: Multi-Omic Integration by Machine Learning (MIMaL) Reveals Protein-Metabolite Connections and New Gene Functions

description: Metabolomics and proteomics generate large, complex datasets that reflect the state of a biological system. Multi-omics is the integration of these disparate methods and data to gain a clearer picture of the biological state. Multi-omic studies of the proteome and metabolome are becoming more common as mass spectrometry technology continues to be democratized. However, knowledge extraction through integration of these data remains challenging. Here we show that connections between these omic layers can be discovered through a combination of machine learning and model interpretation. We find that SHAP values connecting proteins to metabolites are valid experimentally, and reveal also largely new connections. Further, clustering the magnitudes of protein control over all metabolites enabled prediction of gene five gene functions, each of which was validated experimentally. We accurately predicted that two uncharacterized genes in yeast modulate mitochondrial translation, <em>YJR120W</em> and <em>YLD157C</em>.We also predict and validate functions for several incompletely characterized genes, including <em>SDH9</em>, <em>ISC1</em>, and <em>FMP52</em>. Our work demonstrates that multi-omic analysis with machine learning (MIMaL) is a new lens that reveals new insight from multi-omic data that would not be possible using any omic layer alone.
DOI: 10.5281/zenodo.6537296
title: Multi-Omic Integration by Machine Learning (MIMaL) Reveals Protein-Metabolite Connections and New Gene Functions

description: Metabolomics and proteomics generate large, complex datasets that reflect the state of a biological system. Multi-omics is the integration of these disparate methods and data to gain a clearer picture of the biological state. Multi-omic studies of the proteome and metabolome are becoming more common as mass spectrometry technology continues to be democratized. However, knowledge extraction through integration of these data remains challenging. Here we show that connections between these omic layers can be discovered through a combination of machine learning and model interpretation. We find that SHAP values connecting proteins to metabolites are valid experimentally, and reveal also largely new connections. Further, clustering the magnitudes of protein control over all metabolites enabled prediction of gene five gene functions, each of which was validated experimentally. We accurately predicted that two uncharacterized genes in yeast modulate mitochondrial translation, <em>YJR120W</em> and <em>YLD157C</em>.We also predict and validate functions for several incompletely characterized genes, including <em>SDH9</em>, <em>ISC1</em>, and <em>FMP52</em>. Our work demonstrates that multi-omic analysis with machine learning (MIMaL) is a new lens that reveals new insight from multi-omic data that would not be possible using any omic layer alone.
DOI: 10.6084/m9.figshare.19747678
title: Call Drop Data with Same Network Provider

description: CDR Dataset for Call Drop Data with Same Network Provider
DOI: 10.6084/m9.figshare.19747678.v2
title: Call Drop Data with Same Network Provider

description: CDR Dataset for Call Drop Data with Same Network Provider
DOI: 10.6084/m9.figshare.19747678.v1
title: Call Drop Data with Same Network Provider

description: CDR Dataset for Call Drop Data with Same Network Provider
DOI: 10.5281/zenodo.6539755
title: Supplemental Files for The Microbiome and Volatile Organic Compounds Reflect the State of Decomposition in an Indoor Environment

description: Supplemental File 1: Operational taxonomic unit (OTU) matrix, taxonomy table, and metadata of decomposing swine microbiome data (uploaded file into R) Supplemental File 2: Volatile Organic Compounds identified in each stage of decomposition with functional group, retention time, peak area, and logarithmic value of relative peak area Supplemental File 3: Random forest analysis output including predictor species for each sampling location and Groupings
DOI: 10.5281/zenodo.6539754
title: Supplemental Files for The Microbiome and Volatile Organic Compounds Reflect the State of Decomposition in an Indoor Environment

description: Supplemental File 1: Operational taxonomic unit (OTU) matrix, taxonomy table, and metadata of decomposing swine microbiome data (uploaded file into R) Supplemental File 2: Volatile Organic Compounds identified in each stage of decomposition with functional group, retention time, peak area, and logarithmic value of relative peak area Supplemental File 3: Random forest analysis output including predictor species for each sampling location and Groupings
DOI: 10.6084/m9.figshare.19747621.v1
title: Assessment of physiological and electrochemical effects of a repurposed Zinc dithiocarbamate complex on Acinetobacter baumannii biofilms

description: <em>Acinetobacter baumannii </em>is an infectious agent of global proportion and concern, partly due to its proficiency in development of antibiotic resistance phenotypes and biofilm formation. Dithiocarbamates (DTC) have been identified as possible alternatives to the current antimicrobials. We report here the evaluation of several DTC-metal complexes against <em>A. baumannii</em> planktonic cells and biofilms. Among the DTC-metal complexes and DTCs tested, ZnL1 (N-methyl-1-phenyldithiocarbamato-S,S’ Zn(II)), originally designed as an antitumor agent, is effective against biofilm forming <em>A. baumannii.</em> A MIC value of 12.5 µM, comparable to that of Gentamicin (5 µM) was measured for planktonic cells in tryptic soy broth. Spectroscopy, microscopy and biochemical analyses reveal cell membrane degradation and leakage after treatment with ZnL1. Bioelectrochemical analysis show that ZnL1 reduces biofilm formation and decreases extracellular respiration of pre-formed biofilms, as corroborated by microscopic analyses. Due to the affinity of Zn to cells and the metal chelating nature of L1 ligand, we hypothesize ZnL1 could alter metalloprotein functions in the membranes of <em>A. baumannii</em> cells, leading to altered redox balance and cell. Results indicate that DTC-Zn metal complex are effective antimicrobial agents against early <em>A. baumannii biofilms</em> under laboratory conditions.
DOI: 10.34740/kaggle/dsv/3618101
title: Covid-19 in Singapore : Latest Detailed Data
DOI: 10.6084/m9.figshare.19216812.v2
title: Linking the Network Centrality Measures Closeness and Degree: Additional Data

description: Data and additional information to support article "Linking the Network Centrality Measures Closeness and Degree" by Tim S Evans and Bingsheng Chen.<br>
DOI: 10.6084/m9.figshare.19216812.v1
title: Linking the Network Centrality Measures Closeness and Degree: Additional Data

description: Data and additional information to support article "Linking the Network Centrality Measures Closeness and Degree" by Tim S Evans and Bingsheng Chen.<br>
DOI: 10.34740/kaggle/dsv/3577464
title: Preprocessed Data
DOI: 10.6084/m9.figshare.19749742
title: GSE150290

description: 24 patients with 9 intestinal gastric cancers (IGC) and 15 diffuse gastric cancers (DGC). 47 biopsies consisting of 24 GC lesions and 23 adjacent normals.
DOI: 10.5281/zenodo.6539860
title: Field Implementation and Monitoring of an Ultra-High Performance Concrete Bridge Deck Overlay

description: This project focused on field implementation of an ultra-high performance concrete (UHPC) overlay during rehabilitation of an existing concrete bridge (No. 7032) deck in Socorro, New Mexico, USA. Bridge 7032 is a two-lane bridge that is approximately 300 ft. (91.4 m) long and 54 ft. (16.5 m) in width. Rehabilitation of bridge 7032 included removal of deteriorated concrete from the existing deck, installation of a high-performance deck (HPD) leveling course, and installation of a 1 in. (25 mm) UHPC overlay. An UHPC mixture with a 19.5 ksi (134 MPa) compressive strength developed in previous research was selected for this project. This mixture was revised at the beginning of the project, highlighting the need for robust mixtures that can accommodate constituent material substitutions. Prior to placement of the UHPC overlay, the HPD substrate was ceramic bead blasted to remove surface paste and partially expose fine aggregate, thoroughly cleaned, and maintained saturated for 24 hours prior to UHPC placement. The non-proprietary UHPC overlay was successfully placed in four sections between April 10, 2021 and April 27, 2021. During construction of the UHPC overlay, a total of 105 batches were placed. The average direct tensile bond strength of the UHPC overlaid bridge deck was 239 psi (1.65 MPa), which is conservative since several of the tests had fractures that occurred at the epoxy-UHPC interface. Strain gauges and thermocouples were used to monitor the UHPC overlay and existing deck through initial, early-age, and longer-term monitoring programs. Temperature and strain monitoring showed that daily and multi-day strain trends coincided well with daily temperature trends.<br> Major observations during this field implementation project were that four small areas of possible delamination were identified using non-destructive testing, the bond strength was good since the 239 psi (1.65 MPa) average was conservative, preliminary monitoring results were consistent with expectations based on temperature measurements and restraint provided by the concrete superstructure, and relative strains from the monitoring data are being used for detailed analysis of the bridge and overlay behaviors for an ongoing NMDOT project that runs for another two years.
description: Tran-SET Project: 19CNMS01