cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7046765
title: Supplementary Material for: R Open Source Programming Code for Calculation of the Kidney Donor Profile Index and Kidney Donor Risk Index

description: <b><i>Background:</i></b> The Kidney Donor Profile Index (KDPI) and Kidney Donor Risk Index (KDRI) were developed by the United States Organ Procurement and Transplantation Network (OPTN). They may influence the clinical decision whether to accept or discard a donor kidney, but still there are debates about KDPI/KDRI applicability and its consequences. To further evaluate these indexes in different populations, more data should be analyzed, and a universally applicable program code would facilitate it. Currently, KDPI/KDRI calculation could be readily done only on the OPTN website that is convenient for a single donor, but not suitable for processing data sets with many records. <b><i>Summary:</i></b> A universally applicable program algorithm in widely used R language for calculating KDPI and KDRI was developed according to donor factors and coefficients described in the OPTN guide. <b><i>Key Messages:</i></b> The open R code permits to calculate KDPI/KDRI either for a single donor or for an unlimited number of records in large data sets. The presented software code would save substantial time to research groups all over the world and help to clarify the KDPI/KDRI role in global settings.
DOI: 10.6084/m9.figshare.7046768
title: Use of high density single nucleotide polymorphism (SNP) arrays to assess genetic diversity and population structure of dairy cattle in smallholder dairy systems: the case of Girinka Programme in Rwanda

description: The Genotype data represents raw data from the Geneseek 150K GGP SNP panel. The Rwanda Baseline survey data file has socio-economic and productivity data for 1500 farmers owners of the genotyped animals.
DOI: 10.6084/m9.figshare.7046768.v1
title: Use of high density single nucleotide polymorphism (SNP) arrays to assess genetic diversity and population structure of dairy cattle in smallholder dairy systems: the case of Girinka Programme in Rwanda

description: The Genotype data represents raw data from the Geneseek 150K GGP SNP panel. The Rwanda Baseline survey data file has socio-economic and productivity data for 1500 farmers owners of the genotyped animals.
DOI: 10.6084/m9.figshare.7046744
title: experiment 1 - table - behavioral results

description: behavioral results of experiment 1
DOI: 10.6084/m9.figshare.7046741
title: experiment 1 - example subject (3) - Go-RTs

description: example Go-RTs of experiment 1 (subject 3)
DOI: 10.6084/m9.figshare.7046744.v1
title: experiment 1 - table - behavioral results

description: behavioral results of experiment 1
DOI: 10.6084/m9.figshare.7046738
title: experiment 1 - PSI marginal - parameter estimates - example subject (3)

description: experiment 1 - PSI marginal method's parameter estimates
DOI: 10.6084/m9.figshare.7046738.v1
title: experiment 1 - PSI marginal - parameter estimates - example subject (3)

description: experiment 1 - PSI marginal method's parameter estimates
DOI: 10.6084/m9.figshare.7046741.v1
title: experiment 1 - example subject (3) - Go-RTs

description: example Go-RTs of experiment 1 (subject 3)
DOI: 10.6084/m9.figshare.7046732
title: experiment 1 - staircase - accuracy - non-slowed

description: experiment 1 - accuracy of non-slowed participants in staircase block
DOI: 10.6084/m9.figshare.7046735
title: experiment 1 - staircase - accuracy - slowed

description: experiment 1 - accuracy of slowed participants in staircase block
DOI: 10.6084/m9.figshare.7046732.v1
title: experiment 1 - staircase - accuracy - non-slowed

description: experiment 1 - accuracy of non-slowed participants in staircase block
DOI: 10.6084/m9.figshare.7046735.v1
title: experiment 1 - staircase - accuracy - slowed

description: experiment 1 - accuracy of slowed participants in staircase block
DOI: 10.6084/m9.figshare.7046723
title: experiment 1 - PSI marginal - accuracy - non-slowed

description: experiment 1 - accuracy of non-slowed participants in PSI method's block
DOI: 10.6084/m9.figshare.7046726
title: experiment 1 - PSI marginal - accuracy - slowed

description: experiment 1 - accuracy of slowed participants in PSI method's block
DOI: 10.6084/m9.figshare.7046720
title: simulation results - all methods - slopes - no-slowing

description: all methods' slopes in simulations 1 - no response slowing
DOI: 10.6084/m9.figshare.7046726.v1
title: experiment 1 - PSI marginal - accuracy - slowed

description: experiment 1 - accuracy of slowed participants in PSI method's block
DOI: 10.6084/m9.figshare.7046717
title: simulation results - all methods - deviations - no-slowing

description: all methods' deviation results in simulations 1 - no response slowing
DOI: 10.6084/m9.figshare.7046720.v1
title: simulation results - all methods - slopes - no-slowing

description: all methods' slopes in simulations 1 - no response slowing
DOI: 10.6084/m9.figshare.7046723.v1
title: experiment 1 - PSI marginal - accuracy - non-slowed

description: experiment 1 - accuracy of non-slowed participants in PSI method's block
DOI: 10.6084/m9.figshare.7046714
title: simulation results - all methods - correlations - no-slowing

description: all methods' correlation results from simulations 1 - no response slowing
DOI: 10.6084/m9.figshare.7046717.v1
title: simulation results - all methods - deviations - no-slowing

description: all methods' deviation results in simulations 1 - no response slowing
DOI: 10.6084/m9.figshare.7046708
title: simulation results - PSI marginal - correlations - slowing

description: PSI marginal correlation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046711
title: simulation results - staircase - correlations - slowing

description: staircase method's correlation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046714.v1
title: simulation results - all methods - correlations - no-slowing

description: all methods' correlation results from simulations 1 - no response slowing
DOI: 10.6084/m9.figshare.7046708.v1
title: simulation results - PSI marginal - correlations - slowing

description: PSI marginal correlation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046711.v1
title: simulation results - staircase - correlations - slowing

description: staircase method's correlation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046702
title: simulation results - PSI marginal - slopes - slowing

description: PSI marginal slope results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046705
title: simulation results - PSI adjusted - correlations - slowing

description: PSI adjusted correlation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046705.v1
title: simulation results - PSI adjusted - correlations - slowing

description: PSI adjusted correlation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046702.v1
title: simulation results - PSI marginal - slopes - slowing

description: PSI marginal slope results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046699
title: simulation results - PSI adjusted - slopes - slowing

description: PSI adjusted slope results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046699.v1
title: simulation results - PSI adjusted - slopes - slowing

description: PSI adjusted slope results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046693
title: simulation results - PSI marginal - deviations - slowing

description: PSI marginal deviation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046696
title: simulation results - staircase - deviations - slowing

description: staircase deviation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046687
title: experiment 2 - example subject (16) - Go-RTs

description: experiment 2 - example subject (16) - Go-RTs
DOI: 10.6084/m9.figshare.7046690
title: simulation results - PSI adjusted - deviations - slowing

description: simulation results - PSI adjusted - deviations - slowing
DOI: 10.6084/m9.figshare.7046693.v1
title: simulation results - PSI marginal - deviations - slowing

description: PSI marginal deviation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046696.v1
title: simulation results - staircase - deviations - slowing

description: staircase deviation results from simulations 2 - slowing
DOI: 10.6084/m9.figshare.7046687.v1
title: experiment 2 - example subject (16) - Go-RTs

description: experiment 2 - example subject (16) - Go-RTs
DOI: 10.6084/m9.figshare.7046690.v1
title: simulation results - PSI adjusted - deviations - slowing

description: simulation results - PSI adjusted - deviations - slowing
DOI: 10.6084/m9.figshare.7046684
title: explanation - parameter results

description: explanation of parameter results
DOI: 10.6084/m9.figshare.7046678
title: experiment 2 - staircase - accuracy - slowed

description: experiment 2 - staircase - accuracy - slowed
DOI: 10.6084/m9.figshare.7046678.v1
title: experiment 2 - staircase - accuracy - slowed

description: experiment 2 - staircase - accuracy - slowed
DOI: 10.6084/m9.figshare.7046684.v1
title: explanation - parameter results

description: explanation of parameter results
DOI: 10.6084/m9.figshare.7046672
title: experiment 1 - PSI marginal - maximum probability

description: experiment 1 - PSI marginal - maximum probability
DOI: 10.6084/m9.figshare.7046675
title: experiment 2 - staircase - accuracy - non-slowed

description: experiment 2 - staircase - accuracy - non-slowed
DOI: 10.6084/m9.figshare.7046675.v1
title: experiment 2 - staircase - accuracy - non-slowed

description: experiment 2 - staircase - accuracy - non-slowed
DOI: 10.6084/m9.figshare.7046669
title: simulation results - staircase - slopes - slowing

description: simulation results - staircase - slopes - slowing
DOI: 10.6084/m9.figshare.7046672.v1
title: experiment 1 - PSI marginal - maximum probability

description: experiment 1 - PSI marginal - maximum probability
DOI: 10.6084/m9.figshare.7046666
title: experiment 2 - table - behavioral results

description: experiment 2 - table - behavioral results
DOI: 10.6084/m9.figshare.7046666.v1
title: experiment 2 - table - behavioral results

description: experiment 2 - table - behavioral results
DOI: 10.6084/m9.figshare.7046669.v1
title: simulation results - staircase - slopes - slowing

description: simulation results - staircase - slopes - slowing
DOI: 10.6084/m9.figshare.7046660
title: experiment 2 - PSI adjusted - accuracy - slowed

description: experiment 2 - PSI adjusted - accuracy - slowed
DOI: 10.6084/m9.figshare.7046663.v1
title: Brake pad

description: Brake pad consisting of friction material, backplate and shim.
DOI: 10.6084/m9.figshare.7046657
title: experiment 2 - PSI adjusted - accuracy - non-slowed

description: experiment 2 - PSI adjusted - accuracy - non-slowed
DOI: 10.6084/m9.figshare.7046654
title: experiment 2 - PSI adjusted - parameter estimates - example subject (16)

description: experiment 2 - PSI adjusted - parameter estimates - example subject (16)
DOI: 10.6084/m9.figshare.7046657.v1
title: experiment 2 - PSI adjusted - accuracy - non-slowed

description: experiment 2 - PSI adjusted - accuracy - non-slowed
DOI: 10.6084/m9.figshare.7046660.v1
title: experiment 2 - PSI adjusted - accuracy - slowed

description: experiment 2 - PSI adjusted - accuracy - slowed
DOI: 10.6084/m9.figshare.7046651
title: experiment 2 - PSI adjusted - maximum probability estimate

description: experiment 2 - PSI adjusted - maximum probability estimate
DOI: 10.6084/m9.figshare.7046654.v1
title: experiment 2 - PSI adjusted - parameter estimates - example subject (16)

description: experiment 2 - PSI adjusted - parameter estimates - example subject (16)
DOI: 10.6084/m9.figshare.7046648
title: simulation results - PSI marginal - correlations - pure slowing

description: simulation results - PSI marginal - correlations - pure slowing
DOI: 10.6084/m9.figshare.7046648.v1
title: simulation results - PSI marginal - correlations - pure slowing

description: simulation results - PSI marginal - correlations - pure slowing
DOI: 10.6084/m9.figshare.7046645
title: simulation results - PSI marginal - deviations - pure slowing

description: simulation results - PSI marginal - deviations - pure slowing
DOI: 10.6084/m9.figshare.7046651.v1
title: experiment 2 - PSI adjusted - maximum probability estimate

description: experiment 2 - PSI adjusted - maximum probability estimate
DOI: 10.6084/m9.figshare.7046639
title: simulation results - PSI marginal - entropy- pure slowing

description: simulation results - PSI marginal - entropy- pure slowing
DOI: 10.6084/m9.figshare.7046642
title: simulation results - PSI marginal - slopes- pure slowing

description: simulation results - PSI marginal - slopes- pure slowing
DOI: 10.6084/m9.figshare.7046645.v1
title: simulation results - PSI marginal - deviations - pure slowing

description: simulation results - PSI marginal - deviations - pure slowing
DOI: 10.6084/m9.figshare.7046639.v1
title: simulation results - PSI marginal - entropy- pure slowing

description: simulation results - PSI marginal - entropy- pure slowing
DOI: 10.6084/m9.figshare.7046642.v1
title: simulation results - PSI marginal - slopes- pure slowing

description: simulation results - PSI marginal - slopes- pure slowing
DOI: 10.6084/m9.figshare.7046636
title: simulation results - PSI adjusted - slopes - pure slowing

description: simulation results - PSI adjusted - slopes - pure slowing
DOI: 10.6084/m9.figshare.7046636.v1
title: simulation results - PSI adjusted - slopes - pure slowing

description: simulation results - PSI adjusted - slopes - pure slowing
DOI: 10.6084/m9.figshare.7046633
title: simulation results - PSI adjusted - deviations - pure slowing

description: simulation results - PSI adjusted - deviations - pure slowing
DOI: 10.6084/m9.figshare.7046633.v1
title: simulation results - PSI adjusted - deviations - pure slowing

description: simulation results - PSI adjusted - deviations - pure slowing
DOI: 10.6084/m9.figshare.7046627
title: simulation results - PSI adjusted - correlations - pure slowing

description: simulation results - PSI adjusted - correlations - pure slowing
DOI: 10.6084/m9.figshare.7046627.v1
title: simulation results - PSI adjusted - correlations - pure slowing

description: simulation results - PSI adjusted - correlations - pure slowing
DOI: 10.6084/m9.figshare.7046612
title: Supplementary Material for: Epigenetic Age in Male Combat-Exposed War Veterans: Associations with Posttraumatic Stress Disorder Status

description: DNA methylation patterns change with age and can be used to derive an estimate of “epigenetic age,” an indicator of biological age. Several studies have shown associations of posttraumatic stress disorder (PTSD) with worse somatic health and early mortality, raising the possibility of accelerated biological aging. This study examined associations between estimated epigenetic age and various variables in 160 male combat-exposed war veterans with (<i>n</i> = 79) and without PTSD (<i>n</i> = 81). DNA methylation was assessed in leukocyte genomic DNA using the Illumina 450K DNA methylation arrays. Epigenetic age was estimated using Horvath’s epigenetic clock algorithm and Δage (epigenetic age-chronological age) was calculated. In veterans with PTSD (Δage = 3.2), Δage was on average lower compared to those without PTSD (Δage = 5.0; <i>p</i> = 0.02; Cohen’s d = 0.42). This between-group difference was not explained by race/ethnicity, lifestyle factors or childhood trauma. Antidepressant use, however, explained part of the association. In the PTSD positive group, telomerase activity was negatively related to Δage (β = –0.35; <i>p</i> = 0.007). In conclusion, veterans with PTSD had significantly lower epigenetic age profiles than those without PTSD. Further, current antidepressant use and higher telomerase activity were related to relatively less epigenetic aging in veterans with PTSD, speculative of a mechanistic pathway that might attenuate biological aging-related processes in the context of PTSD.
DOI: 10.6084/m9.figshare.7046600
title: Supplementary Material for: Early Introduction of Egg and the Development of Egg Allergy in Children: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> The timing of the introduction of egg to an infant’s diet is of current interest, as new evidence raises questions regarding the benefit of delaying egg introduction. The objective of this study was to systematically review the existing literature regarding the effect of the early introduction of egg on the development of egg allergy. <b><i>Methods:</i></b> Literature searches were conducted in MEDLINE, EMBASE, and CENTRAL, and trial protocols were searched in Meta Register and OpenGREY. Only randomized controlled trials (RCTs) comparing early (between 3 and 6 months of age) egg introduction to no early introduction were included. The primary outcome was the development of egg allergy. <b><i>Results:</i></b> Of the 416 articles identified and screened, 6 RCTs met the eligibility criteria for data extraction. Allergic outcomes were evaluated in a total of 3,032 participants. A low to moderate level of evidence showed a benefit of the early introduction of egg (relative risk, RR 0.60, 95% CI 0.44–0.82, <i>p</i> = 0.002, mild heterogeneity, <i>I</i><sup>2</sup> = 23%). The absolute risk reduction for a population with an incidence of egg allergy of 9.3% was 37 fewer cases (95% CI 17–52) per 1,000 people. Consumption of &lt; 4,000 mg/week of egg protein had a greater preventive effect than a higher dose. <b><i>Conclusion:</i></b> This systematic review and meta-analysis showed an association between the early introduction of egg and a lower risk of egg allergy. Furthermore, the nature and dose of egg protein exposure may play a role. These findings should be addressed in the context of primary studies.
DOI: 10.6084/m9.figshare.7046483
title: ZJUT-AIr-Ground Datasets

description: It‘s a dataset of UAV and UGV collaborative sensing for complex environment. It's provided as the format as rosbag.
DOI: 10.6084/m9.figshare.7046171
title: Sufficient number of experiments for the adaptability and stability analyses of maize using the Eberhart and Russell method

description: Abstract: The objective of this work was to determine the sufficient number of experiments (environments) for the adaptability and stability analyses of maize cultivars, using the Eberhart and Russell method. Grain yield data from 63 trials of maize cultivars from six groups of experiments were used. In each group, new data files were formed from all experiments (n), for the combinations of 3, 4, ..., n-1 experiments, totaling 10,381 files. Mean and estimates of the adaptability (b) and stability (S2d) parameters were obtained for each cultivar, in each file. A power function was adjusted for the amplitudes of b and S2d (dependent variables) in each cultivar, as a function of the number of experiments (independent variable), totaling 290 equations (145 cultivars × two dependent variables). For each equation, the value was determined on the abscissa axis (Xs, sufficient number of experiments), corresponding to the point of maximum curvature. The highest value among the 290 estimates of Xs, rounded up to the nearest integer, was assumed to be the sufficient number of experiments for the analyses. Seven experiments are sufficient to analyze the adaptability and stability of maize cultivars using the Eberhart and Russell method.
DOI: 10.6084/m9.figshare.7046171.v1
title: Sufficient number of experiments for the adaptability and stability analyses of maize using the Eberhart and Russell method

description: Abstract: The objective of this work was to determine the sufficient number of experiments (environments) for the adaptability and stability analyses of maize cultivars, using the Eberhart and Russell method. Grain yield data from 63 trials of maize cultivars from six groups of experiments were used. In each group, new data files were formed from all experiments (n), for the combinations of 3, 4, ..., n-1 experiments, totaling 10,381 files. Mean and estimates of the adaptability (b) and stability (S2d) parameters were obtained for each cultivar, in each file. A power function was adjusted for the amplitudes of b and S2d (dependent variables) in each cultivar, as a function of the number of experiments (independent variable), totaling 290 equations (145 cultivars × two dependent variables). For each equation, the value was determined on the abscissa axis (Xs, sufficient number of experiments), corresponding to the point of maximum curvature. The highest value among the 290 estimates of Xs, rounded up to the nearest integer, was assumed to be the sufficient number of experiments for the analyses. Seven experiments are sufficient to analyze the adaptability and stability of maize cultivars using the Eberhart and Russell method.
DOI: 10.6084/m9.figshare.7046168
title: Production of 'Valência' sweet orange on 41 rootstocks in the north of the state of São Paulo, Brazil

description: Abstract: The objective of this work was to select alternative rootstocks to 'Rangpur' lime for 'Valência' sweet orange scions in the northern region of the state of São Paulo, Brazil, based on initial fruit yield. Forty-one rootstocks were evaluated in an experiment carried out in March 2007, in the municipality of Colômbia, in the state of São Paulo. The accumulated fruit yield of 'Valência' sweet orange was assessed in the 2009, 2010, and 2011 crop seasons. The rootstocks 'Sunki' mandarin x Poncirus. trifoliata 'English', 'Malvasio SRA 115' mandarin, 'C-13' “S” citrange, 'Sunki' mandarin x P. trifoliata 'Benecke', 'Valência Rhode Red' sweet orange + 'Volkamer' lemon, 'C-54-4-4 SRA 337' mandarin, 'Cleopatra' mandarin x P. trifoliata 'Rubidoux', and 'À Peau Lisse SRA 267' have potential to replace 'Rangpur' lime in the northern region of the state of São Paulo, Brazil.
DOI: 10.6084/m9.figshare.7046165
title: Ebstein's Anomaly: "The One and a Half Ventricle Heart"

description: Abstract Objective: Ebstein's anomaly remains a relatively ignored disease. Lying in the 'No Man's land' between congenital and valve surgeons, it largely remains inadequately studied. We report our short-term results of treating it as a 'one and a half ventricle heart' and propose that the true tricuspid annulus (TTA) 'Z' score be used as an objective criterion for estimation of 'functional' right ventricle (RV). Methods: 22 consecutive patients undergoing surgery for Ebstein's anomaly were studied. Echocardiography was performed to assess the type and severity of the disease, tricuspid annular dimension and its 'Z' score. Patients were operated by a modification of the cone repair, with addition of annuloplasty, bidirectional cavopulmonary shunt (BCPS) and right reduction atrioplasty to provide a comprehensive repair. TTA 'Z' score was correlated later with postplication indexed residual RV volume. Results: There was one (4.5%) early and no late postoperative death. There was a significant reduction in tricuspid regurgitation grading (3.40±0.65 to 1.22±0.42, P&lt;0.001). Residual RV volume reduced to 71.96±3.8% of the expected volume and there was a significant negative correlation (rho −0.83) between TTA 'Z' score and indexed residual RV volume. During the follow-up of 20.54±7.62 months, the functional class improved from 2.59±0.7 to 1.34±0.52 (P&lt;0.001). Conclusion: In Ebstein's anomaly, a higher TTA 'Z' score correlates with a lower postplication indexed residual RV volume. Hence, a complete trileaflet repair with offloading of RV by BCPS (when the TTA 'Z' score is &gt;2) is recommended. The short-term outcomes of our technique are promising.