cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dyux9x
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-97.5747231999999940 35.4429228999999992, -97.5747231999999940 35.4444870100000031, -97.5747231999999940 35.4465111600000000, -97.5747231999999940 35.4486273199999999, -97.5747231999999940 35.4501914299999967, -97.5747231999999940 35.4514795199999995, -97.5747231999999940 35.4535956799999994, -97.5747231999999940 35.4552517999999992, -97.5730635500000005 35.4552517999999992, -97.5714038899999991 35.4552517999999992, -97.5698364400000031 35.4552517999999992, -97.5676235699999950 35.4552517999999992, -97.5655028999999985 35.4552517999999992, -97.5655028999999985 35.4531356500000001, -97.5655028999999985 35.4514795199999995, -97.5655028999999985 35.4495473799999985, -97.5655028999999985 35.4484433000000010, -97.5655028999999985 35.4465111600000000, -97.5655028999999985 35.4452230699999973, -97.5655028999999985 35.4429228999999992, -97.5673469599999947 35.4429228999999992, -97.5686378000000047 35.4429228999999992, -97.5700208500000059 35.4429228999999992, -97.5726025299999975 35.4429228999999992, -97.5747231999999940 35.4429228999999992))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098619-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gscucw
title: Occurrence Download

description: A dataset containing 2776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-84.3873035999999956 33.8277617999999975, -84.3873035999999956 33.8301616999999979, -84.3873035999999956 33.8324692999999996, -84.3873035999999956 33.8337615599999992, -84.3873035999999956 33.8353307300000026, -84.3873035999999956 33.8369921999999974, -84.3858273799999949 33.8369921999999974, -84.3842589399999952 33.8369921999999974, -84.3822291999999976 33.8369921999999974, -84.3806607599999978 33.8369921999999974, -84.3792768400000028 33.8369921999999974, -84.3776161499999944 33.8369921999999974, -84.3763244900000018 33.8369921999999974, -84.3746637899999996 33.8369921999999974, -84.3721726999999930 33.8369921999999974, -84.3721726999999930 33.8356076399999992, -84.3721726999999930 33.8331154299999994, -84.3721726999999930 33.8320077799999979, -84.3721726999999930 33.8301616999999979, -84.3721726999999930 33.8277617999999975, -84.3738334399999985 33.8277617999999975, -84.3756786600000055 33.8277617999999975, -84.3784464999999955 33.8277617999999975, -84.3801071900000039 33.8277617999999975, -84.3822291999999976 33.8277617999999975, -84.3844434600000000 33.8277617999999975, -84.3855506000000020 33.8277617999999975, -84.3873035999999956 33.8277617999999975))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 2776 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093631-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jk79s3
title: Occurrence Download

description: A dataset containing 621657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, United States of America)",
 "EventDate is greater than or equal to 2021-09-05",
 "EventDate is less than or equal to 2021-10-05",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 621657 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129164-210914110416597/datasets/export for details.
DOI: 10.15468/dl.2ywr3o
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Filgueirasia Guala",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011801-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwewxb
title: Occurrence Download

description: A dataset containing 1088665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-44.23712 -16.75597,-34.2229 -16.75597,-34.2229 -1.77104,-44.23712 -1.77104,-44.23712 -16.75597))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 1088665 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0417400-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qccj62
title: Occurrence Download

description: A dataset containing 6589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-84.3841874000000018 33.8381471000000005, -84.3841874000000018 33.8403946399999995, -84.3841874000000018 33.8427920199999974, -84.3841874000000018 33.8445900600000016, -84.3841874000000018 33.8471372699999975, -84.3841874000000018 33.8487854700000028, -84.3841874000000018 33.8517821900000015, -84.3841874000000018 33.8555281000000008, -84.3796952600000054 33.8555281000000008, -84.3771497099999976 33.8555281000000008, -84.3734062599999959 33.8555281000000008, -84.3692135999999948 33.8555281000000008, -84.3692135999999948 33.8522316999999973, -84.3692135999999948 33.8498343199999994, -84.3692135999999948 33.8471372699999975, -84.3692135999999948 33.8439907099999999, -84.3692135999999948 33.8420428399999977, -84.3692135999999948 33.8381471000000005, -84.3734062599999959 33.8381471000000005, -84.3765507600000007 33.8381471000000005, -84.3786470900000012 33.8381471000000005, -84.3808931599999994 33.8381471000000005, -84.3841874000000018 33.8381471000000005))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 6589 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093634-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m179jh
title: Occurrence Download

description: A dataset containing 553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Barringtonia racemosa (L.) Spreng.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 553 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011801-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11391814
title: The SPHINX M-dwarf Spectral Grid. I. Benchmarking New Model Atmospheres to Derive Fundamental M-Dwarf Properties

description: NEW UPDATE:::::::::::::PLEASE USE VERSION 3 spectra!

MODEL GRID AND SUPPLEMENTARY FIGURES for The SPHINX M-dwarf Spectral Grid. I. Benchmarking New Model Atmospheres to Derive Fundamental M-Dwarf Properties:

(1) MODEL GRID: Zip file titled 'SPHINX_MODELS_MLT_1.zip' contains a directory (376MB on disk) that is divided into three folders: ATMS, SPECTRA, and ABUNDANCES. All models here assume mixing length parameter of 1. For more info, we direct the reader to the paper.

The ATMS directory contains thermal profiles/atmospheres of all models. (Temperature in K, Pressure in bars)

The SPECTRA directory contains synthetic spectra. (Wavelength--0.1 to 20 microns, Flux in W/m2/m, R~250)

The ABUNDANCES directory contains mixing ratios of all atomic and molecular species included in these models.

(2) SUPPLEMENTARY FIGURES:

The plot files are named as 'target name' _ corner.

Each file is a corner plot of posterior probability distributions from grid-model fit of low-resolution spectra of benchmark M dwarfs using the SPHINX model grid. We also include posterior distributions of Starfish (Czekala et al.2015) hyperparameters to properly constrain model and data systematics. The vertical blue lines in the plots indicate values from observations (empirically derived [M/H] from Mann et al. 2013 and interferometrically measured radii from Boyajian et al. 2012b).

File named Gl436_mixinglength shows difference in grid model fit assuming mixing length parameter 1 vs 0.5.

File named Gl725B_spot shows difference in grid model fit assuming stellar photospheric heterogeneity vs without.

If you use our stellar atmosphere models, please remember to cite both the zenodo doi for the open source data as well as the paper. Thank you!

 

NEW UPDATE:::::::::::::PLEASE USE VERSION 3 spectra! A bug was discovered in code used to upload the files which was artifically scaling models above Teff 3000 K. Fixed now. 

 

--> link to published paper
DOI: 10.15468/dl.v3udmp
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blastobasis glandulella Riley, 1871",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 932 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128550-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7n47ch
title: Occurrence Download

description: A dataset listing the 6626 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "DatasetKey is Digitalización y Sistematización de las Colecciones Biológicas Nacionales del Instituto de Biología, UNAM (Plantas vasculares)",
 "StateProvince is PUEBlA"
 ]
}

 The dataset's 6626 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0417397-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3rn6e
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((61.50484 35.59419,60.64949 34.71256,60.79444 33.10866,61.74662 29.54777,62.35654 29.39569,62.39038 26.99784,61.9372 25.47591,65.38349 25.14118,68.17191 23.97723,70.68306 23.87177,70.34466 27.19789,72.82891 28.82393,73.7788 28.79356,77.66202 27.78672,80.90893 25.83119,83.23549 26.42033,84.1742 24.1059,87.25172 21.13566,89.67154 21.5806,90.6597 22.21471,91.72985 21.41892,93.20866 19.33077,95.23395 15.56509,97.57979 15.58365,98.66288 16.39061,98.08418 20.09905,94.57745 22.56377,95.47654 24.60721,95.66959 26.17007,95.02348 27.48369,92.37228 28.09737,93.74985 30.96497,93.3225 32.68427,85.03185 32.28692,68.00134 36.86088,61.50484 35.59419))",
 "TaxonKey is Aegle marmelos (L.) Corrêa"
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060021-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjy7eb
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Periploca orichalcella (Clemens, 1864)",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 115 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128587-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpnkvs
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-74.2622711000000066 40.6526326999999981, -74.2622711000000066 40.6546366700000021, -74.2622711000000066 40.6555950899999985, -74.2622711000000066 40.6575119199999975, -74.2622711000000066 40.6589059900000009, -74.2622711000000066 40.6603871800000007, -74.2622711000000066 40.6613455999999971, -74.2606175600000000 40.6613455999999971, -74.2580068599999947 40.6613455999999971, -74.2558312900000033 40.6613455999999971, -74.2545259399999935 40.6613455999999971, -74.2521763200000038 40.6613455999999971, -74.2500877599999995 40.6613455999999971, -74.2477381399999956 40.6613455999999971, -74.2460846999999973 40.6613455999999971, -74.2436480500000044 40.6613455999999971, -74.2423426000000006 40.6613455999999971, -74.2423426000000006 40.6594287599999973, -74.2423426000000006 40.6581218299999989, -74.2423426000000006 40.6562049899999991, -74.2423426000000006 40.6548109299999965, -74.2423426000000006 40.6539396399999973, -74.2423426000000006 40.6526326999999981, -74.2438221000000027 40.6526326999999981, -74.2458236300000038 40.6526326999999981, -74.2480862299999984 40.6526326999999981, -74.2499137100000013 40.6526326999999981, -74.2512190599999968 40.6526326999999981, -74.2529595200000045 40.6526326999999981, -74.2544389199999983 40.6526326999999981, -74.2567885400000023 40.6526326999999981, -74.2587900700000034 40.6526326999999981, -74.2602694600000035 40.6526326999999981, -74.2622711000000066 40.6526326999999981))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 60 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094325-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8m2um4
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is South Sudan",
 "Country is Sudan",
 "Country is Mali"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Senegalia senegal (L.) Britton",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 147 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011245-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkyabw
title: Occurrence Download

description: A dataset containing 802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-74.0368531000000019 40.9405191999999971, -74.0368531000000019 40.9428765600000020, -74.0368531000000019 40.9444139599999986, -74.0368531000000019 40.9461563500000025, -74.0368531000000019 40.9476937599999999, -74.0368531000000019 40.9498461299999974, -74.0368531000000019 40.9512810399999978, -74.0368531000000019 40.9535358999999985, -74.0348077200000034 40.9535358999999985, -74.0331714200000022 40.9535358999999985, -74.0315351099999930 40.9535358999999985, -74.0287738499999932 40.9535358999999985, -74.0266261999999955 40.9535358999999985, -74.0266261999999955 40.9519984900000011, -74.0266261999999955 40.9500511099999969, -74.0266261999999955 40.9484112100000033, -74.0266261999999955 40.9470787999999999, -74.0266261999999955 40.9455413900000025, -74.0266261999999955 40.9429790499999982, -74.0266261999999955 40.9405191999999971, -74.0288761200000067 40.9405191999999971, -74.0319441900000044 40.9405191999999971, -74.0347054500000041 40.9405191999999971, -74.0368531000000019 40.9405191999999971))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 802 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0093633-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11374283
title: Databases for the Carpentries Pangenomics Workshop
DOI: 10.5281/zenodo.11374284
title: Databases for the Carpentries Pangenomics Workshop
DOI: 10.15468/dl.kzsmtj
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-97.5746750999999932 35.4274235999999974, -97.5746750999999932 35.4292914400000001, -97.5746750999999932 35.4316929399999978, -97.5746750999999932 35.4332939499999995, -97.5746750999999932 35.4347170599999970, -97.5746750999999932 35.4369406799999993, -97.5746750999999932 35.4380969600000029, -97.5746750999999932 35.4395200700000004, -97.5746750999999932 35.4415657999999993, -97.5729811700000056 35.4415657999999993, -97.5713764000000054 35.4415657999999993, -97.5700390899999945 35.4415657999999993, -97.5679885499999955 35.4415657999999993, -97.5657597000000010 35.4415657999999993, -97.5657597000000010 35.4398758500000000, -97.5657597000000010 35.4387195700000035, -97.5657597000000010 35.4373853999999966, -97.5657597000000010 35.4353396699999976, -97.5657597000000010 35.4339165600000001, -97.5657597000000010 35.4314261099999968, -97.5657597000000010 35.4292024900000015, -97.5657597000000010 35.4274235999999974, -97.5673644700000011 35.4274235999999974, -97.5692367099999984 35.4274235999999974, -97.5716438599999947 35.4274235999999974, -97.5728028700000038 35.4274235999999974, -97.5746750999999932 35.4274235999999974))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098629-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11388651
title: Trypanosoma Epitope Dataset: Valid Epitopes and Randomly Generated Peptides with Biochemical Metrics and AI-Generated Scores
title: Conjunto de dados de Epítopos de Trypanosoma: Epítopos Válidos e Peptídeos Gerados Aleatoriamente com Métricas Bioquímicas e Scores Gerados por IA
title: Conjunto de datos de Epítopos de Trypanosoma: Epítopos Válidos y Péptidos Generados Aleatoriamente con Métricas Bioquímicas y Scores Generados por IA

description: This dataset contains information about valid linear B-Cell epitopes from the Trypanosoma genus, as well as randomly generated peptides. It includes biochemical metrics generated by the EpiBuilder-1.0 tool and scores generated by the BepiPred-3.0 software. The data was originally collected from the IEDB and UniProtKB platforms and has been processed and enhanced with these informations for researchers interested in understanding the molecular interactions between Trypanosoma protozoans and the immune system.
DOI: 10.5281/zenodo.11388652
title: Trypanosoma Epitope Dataset: Valid Epitopes and Randomly Generated Peptides with Biochemical Metrics and AI-Generated Scores
title: Conjunto de dados de Epítopos de Trypanosoma: Epítopos Válidos e Peptídeos Gerados Aleatoriamente com Métricas Bioquímicas e Scores Gerados por IA
title: Conjunto de datos de Epítopos de Trypanosoma: Epítopos Válidos y Péptidos Generados Aleatoriamente con Métricas Bioquímicas y Scores Generados por IA

description: This dataset contains information about valid linear B-Cell epitopes from the Trypanosoma genus, as well as randomly generated peptides. It includes biochemical metrics generated by the EpiBuilder-1.0 tool and scores generated by the BepiPred-3.0 software. The data was originally collected from the IEDB and UniProtKB platforms and has been processed and enhanced with these informations for researchers interested in understanding the molecular interactions between Trypanosoma protozoans and the immune system.
DOI: 10.15468/dl.7q7bcp
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lipschitziella yakla (C.B.Clarke) Kasana & A.K.Pandey"
 ]
}

 The dataset includes 47 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218788-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w29bgb
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Dominican Republic",
 "Country is Haiti"
 ]
 },
 "Geometry POLYGON((-74.59269 17.31929,-67.56507 17.31929,-67.56507 20.13179,-74.59269 20.13179,-74.59269 17.31929))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dieffenbachia Schott"
 ]
}

 The dataset includes 106 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183683-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11386982
title: Diseasome - Finding disease association based on Phenotypic and Genotypic clustering

description: The final processed phenotypic clustered data (output.zip) from Orphanet is also added along side the genotypic clustering data.
DOI: 10.15468/dl.77xcc4
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blakea paludosa Gleason"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0417402-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11361052
title: Diseasome - Finding disease association based on Phenotypic and Genotypic clustering

description: The final processed phenotypic clustered data (output.zip) from Orphanet is also added along side the genotypic clustering data.
DOI: 10.5281/zenodo.11361053
title: Genotypic Clustering from Open Targets

description: These data are from genotypic clustering from Open Targets. Results from Pearson's correlation and Hypergeometric tests are also added here.