cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21009590
title: Additional file 4 of Identification and functional characterization of BICD2 as a candidate disease gene in an consanguineous family with dilated cardiomyopathy

description: Additional file 4. Differentially expressed genes in heterozygous versus wild-type zebrafish.
DOI: 10.6084/m9.figshare.11574306
title: MOESM4 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 4. IHC. Expression of pyroptosis-related protein NLRP3, caspase-1, and GSDMD in endometrial cancer tissue by IHC.
DOI: 10.6084/m9.figshare.21009584.v1
title: Additional file 2 of Identification and functional characterization of BICD2 as a candidate disease gene in an consanguineous family with dilated cardiomyopathy

description: Additional file 2. Differentially expressed genes in homozygous versus wild-type zebrafish.
DOI: 10.6084/m9.figshare.21009590.v1
title: Additional file 4 of Identification and functional characterization of BICD2 as a candidate disease gene in an consanguineous family with dilated cardiomyopathy

description: Additional file 4. Differentially expressed genes in heterozygous versus wild-type zebrafish.
DOI: 10.6084/m9.figshare.21009587.v1
title: Additional file 3 of Identification and functional characterization of BICD2 as a candidate disease gene in an consanguineous family with dilated cardiomyopathy

description: Additional file 3. Differentially expressed genes in heterozygous versus homozygous zebrafish.
DOI: 10.6084/m9.figshare.21009584
title: Additional file 2 of Identification and functional characterization of BICD2 as a candidate disease gene in an consanguineous family with dilated cardiomyopathy

description: Additional file 2. Differentially expressed genes in homozygous versus wild-type zebrafish.
DOI: 10.6084/m9.figshare.12096615.v1
title: Additional file 2 of Single-cell RNA-seq highlights heterogeneity in human primary Wharton’s jelly mesenchymal stem/stromal cells cultured in vitro

description: Additional file 2: Supplemental tables with six tables. Table S1. Marker genes used for potency score analysis. Table S2. Top100 CD genes ranked by mean expression in WJMSCs and ADMSCs. Table S3. CD genes ranked by percentage of cells expressed the genes (at least one UMI). Table S4. List of HVGs identified in WJMSCs. Table S5. DEGs in each cluster by comparing it to all of the others. Table S6. Results of differential gene expression analysis between two different clusters.
DOI: 10.6084/m9.figshare.11574312
title: MOESM5 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 5. Western Blot. The expression of NLRP3 inflammasome and GSDMD in hydrogen-treated endometrial cancer cells by Western Blot.
DOI: 10.6084/m9.figshare.11574312.v1
title: MOESM5 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 5. Western Blot. The expression of NLRP3 inflammasome and GSDMD in hydrogen-treated endometrial cancer cells by Western Blot.
DOI: 10.6084/m9.figshare.21009522.v1
title: Additional file 4 of OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.)

description: Additional file 4. Table S3: Primers used in this study.
DOI: 10.6084/m9.figshare.11574318
title: MOESM2 of An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

description: Additional file 2: Table S3. Features associated with cardiometabolic subsets.
DOI: 10.6084/m9.figshare.11574318.v1
title: MOESM2 of An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

description: Additional file 2: Table S3. Features associated with cardiometabolic subsets.
DOI: 10.6084/m9.figshare.11574321
title: MOESM6 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 6. MTT and ROS. Cell viability (MTT) and ROS in hydrogen-treated endometrial cancer.
DOI: 10.6084/m9.figshare.11574321.v1
title: MOESM6 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 6. MTT and ROS. Cell viability (MTT) and ROS in hydrogen-treated endometrial cancer.
DOI: 10.6084/m9.figshare.11574330
title: MOESM7 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 7. PI and TUNEL assay. Hydrogen-induced ROS and NLRP3 inflammasome-mediated pyroptosis in endometrial cancer by PI and TUNEL assay.
DOI: 10.6084/m9.figshare.11574330.v1
title: MOESM7 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 7. PI and TUNEL assay. Hydrogen-induced ROS and NLRP3 inflammasome-mediated pyroptosis in endometrial cancer by PI and TUNEL assay.
DOI: 10.6084/m9.figshare.11574336
title: MOESM4 of An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

description: Additional file 4. Multimodal correlation data.
DOI: 10.6084/m9.figshare.10001471
title: MOESM3 of LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway

description: Additional file 3: Table S1. Sequences of the primer pairs for q-PCR and sequences of RNAi for transfection.
DOI: 10.6084/m9.figshare.10001471.v1
title: MOESM3 of LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway

description: Additional file 3: Table S1. Sequences of the primer pairs for q-PCR and sequences of RNAi for transfection.
DOI: 10.6084/m9.figshare.11574339
title: MOESM8 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 8. GSDMD shRNA. Identification of GSDMD as a required component for pyroptosis (GSDMD shRNA).
DOI: 10.6084/m9.figshare.11574339.v1
title: MOESM8 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 8. GSDMD shRNA. Identification of GSDMD as a required component for pyroptosis (GSDMD shRNA).
DOI: 10.6084/m9.figshare.22099688
title: datasets.zip

description: The multi-feature deep learning (MDL) model is used to detect the co-seismic landslides in Hokkaido, Japan and Mainling, China, and obtain accurate co-seismic landslide data sets, which also proves the feasibility of the MDL model.
DOI: 10.6084/m9.figshare.10001477
title: MOESM4 of LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway

description: Additional file 4: Table S2. miRNAs associated with LINC00673 and MARK4, as predicted by LncBook and TargetScan.
DOI: 10.6084/m9.figshare.10001477.v1
title: MOESM4 of LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway

description: Additional file 4: Table S2. miRNAs associated with LINC00673 and MARK4, as predicted by LncBook and TargetScan.
DOI: 10.6084/m9.figshare.11574345
title: MOESM9 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 9. LDH. Hydrogen treatment upregulated LDH release in endometrial cancer cells.
DOI: 10.6084/m9.figshare.11574345.v1
title: MOESM9 of Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway

description: Additional file 9. LDH. Hydrogen treatment upregulated LDH release in endometrial cancer cells.
DOI: 10.6084/m9.figshare.10001483
title: MOESM5 of LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway

description: Additional file 5: Table S3. Transcription binding site prediction was conducted by TRANSFAC and JASPAR.
DOI: 10.6084/m9.figshare.10001483.v1
title: MOESM5 of LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway

description: Additional file 5: Table S3. Transcription binding site prediction was conducted by TRANSFAC and JASPAR.
DOI: 10.6084/m9.figshare.25152302
title: Supplementary Material for: Causal relationship between Parkinson's disease with heart and vascular disease: a two-sample Mendelian randomization study

description: Introduction: The aim of this study was to investigate the causal relationship between Parkinson's disease (PD) and myocardial infarction (MI), atrial fibrillation and flutter (AF), and venous thromboembolism (VTE) by Mendelian randomization (MR) analysis. Methods: By using data from publicly available genome-wide association studies from databases, single nucleotide polymorphisms (SNPs) were screened as instrumental variables (IVs), and finished the MR analysis by inverse-variance weighted (IVW), MR-egger, weighted median methods. Results: The primary IVW method showed a negative association between genetically predicted Parkinson's disease and risk of myocardial infarction (OR = 0.9989; 95% CI, 0.9980-0.9998; p = 0.02). However, Parkinson's disease was not significantly associated with atrial fibrillation and flutter or venous thromboembolism. Conclusion: This study suggests a negative association between Parkinson's disease with myocardial infarction, which implies that Parkinson's disease has a protective effect on myocardial infarction.
DOI: 10.6084/m9.figshare.11574348
title: MOESM5 of An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

description: Additional file 5. Median value of key biomarkers, sample subset membership and sample similarity score for the cardiometabolic module and the microbiome richness module.
DOI: 10.6084/m9.figshare.11574348.v1
title: MOESM5 of An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

description: Additional file 5. Median value of key biomarkers, sample subset membership and sample similarity score for the cardiometabolic module and the microbiome richness module.
DOI: 10.5281/zenodo.10624723
title: Capítulos que se le olvidaron a Cervantes. Ensayo de imitación de un libro inimitable - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Juan Montalvo, "Capítulos que se le olvidaron a Cervantes. Ensayo de imitación de un libro inimitable", 1898

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.5281/zenodo.10624724
title: Capítulos que se le olvidaron a Cervantes. Ensayo de imitación de un libro inimitable - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Juan Montalvo, "Capítulos que se le olvidaron a Cervantes. Ensayo de imitación de un libro inimitable", 1898

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.6084/m9.figshare.7378070
title: Fig.5 SERS specstra of EC and linear curve.opj from Detection of ethyl carbamate in liquors using surface-enhanced Raman spectroscopy

description: Ethyl carbamate (EC), a potential carcinogen, can be formed during the fermentation and storage of alcoholic beverages. In this work, quantitative detection of EC in alcoholic beverages by using surface-enhanced Raman spectroscopy (SERS) was reported. Flower-shaped silver nanostructure substrates and silver nanocubes substrates were prepared and employed as SERS platform. Flower-like silver substrates had better Raman enhancement effect on EC and were selected for further EC detection. In EC SERS spectra based on flower-shaped silver substrates, the strongest and reproducible characteristic band at 857 cm<sup>−1</sup> was chosen for establishing linear regression model in the concentrations ranging from 10<sup>−5</sup> to 10<sup>−9</sup> M, which effectively extended the application scope of the quantitative model for determination EC. Furthermore, the real alcoholic beverage was tested to verify the feasibility and reliability of the method.
DOI: 10.6084/m9.figshare.7378076.v1
title: Fig6 detection in real sample.opj from Detection of ethyl carbamate in liquors using surface-enhanced Raman spectroscopy

description: Ethyl carbamate (EC), a potential carcinogen, can be formed during the fermentation and storage of alcoholic beverages. In this work, quantitative detection of EC in alcoholic beverages by using surface-enhanced Raman spectroscopy (SERS) was reported. Flower-shaped silver nanostructure substrates and silver nanocubes substrates were prepared and employed as SERS platform. Flower-like silver substrates had better Raman enhancement effect on EC and were selected for further EC detection. In EC SERS spectra based on flower-shaped silver substrates, the strongest and reproducible characteristic band at 857 cm<sup>−1</sup> was chosen for establishing linear regression model in the concentrations ranging from 10<sup>−5</sup> to 10<sup>−9</sup> M, which effectively extended the application scope of the quantitative model for determination EC. Furthermore, the real alcoholic beverage was tested to verify the feasibility and reliability of the method.
DOI: 10.6084/m9.figshare.21009593.v1
title: Additional file 5 of Identification and functional characterization of BICD2 as a candidate disease gene in an consanguineous family with dilated cardiomyopathy

description: Additional file 5. Zebrafish homologues of 51 human DCM-associated genes.
DOI: 10.6084/m9.figshare.10001564
title: MOESM11 of Circular RNA FOXP1 promotes tumor progression and Warburg effect in gallbladder cancer by regulating PKLR expression

description: Additional file 11. CircRNAs from RNA sequencing targeted miRNAs.
DOI: 10.6084/m9.figshare.8426924.v1
title: Parasitism by <i>Cuscuta australis</i> affects the rhizhospheric soil bacterial communities of <i>Trifolium repens</i> L.

description: The effect of parasitism on belowground microbial communities is not well understood. 16S rRNA gene amplicon sequencing was used to test the effect of <i>Cuscuta australis</i> parasitism on the composition and diversity of bacterial community in the rhizospheric soil of the host plant <i>Trifolium repens</i>. 94569 sequences were obtained from the amplicons of non-parasitised, and 97172 sequences were obtained from the parasitised rhizospheric soil bacterial community. Parasitism of <i>C. australis</i> significantly decreased the relative abundance of the bacterial phylum Nitrospirae, while it significantly increased that of Verrucomicrobia. Parasitism of <i>C. australis</i> significantly decreased the relative abundance of 10 bacterial genera, while it significantly increased those of nine genera. The Chao 1 indexes of the rhizospheric soil bacterial community of parasitised <i>T. repens</i> were significantly lower than those of non-parasitised <i>T. repens</i>. Principal coordinate analysis (based on the genus) and principal component analysis (based on the predicted gene function of bacterial communities) showed that rhizospheric bacterial communities from parasitised and non-parasitised <i>T. repens</i> differed and can be divided into two groups. These results suggest that infection of the holoparasitic plant could indirectly change the composition, diversity, and function of rhizospheric soil bacteria of the host plant.
DOI: 10.6084/m9.figshare.19959961.v1
title: Additional file 12 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 12: Table S7. The sequence identity of CATs in Solanaceae, Brassicaceae and Fabaceae.
DOI: 10.6084/m9.figshare.19959978.v1
title: Additional file 3 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 3: Figure S3. The antimicrobial activity of SMM914. (a) The pH of SMM914 products were determined via test papers. (b) Inhibitory effects of SMM914 against S. aureus and enterotoxigenic E. coli. The circular wells were filled with different products of SMM914, including MRS medium as the negative control (1&2) and the cell-free supernatant without any treatment (3&4), with 15 min heat inactivation (5&6), with pH adjustment using NaOH (7&8) or with 1 mg/mL protease K treatment (9&10). The substances (1, 3, 5, 7 and 9) were obtained from the fermentation broth after cultivation under anaerobic condition, while others (2, 4, 6, 8 and 10) were obtained from culture under aerobic condition. Figure S4. Growth curves and pH value curve of SMM914 after anaerobic or aerobic fermentation. (a) The optical density at 600 nm (OD600) was measured from a starting OD600 about 0.085. (b) The pH value was recorded with a pH meter. Data are the mean ± s.e.m, n = 3. (c) The antimicrobial activities in vitro of SMM914 against S. aureus and enterotoxigenic E. coli at different times of aerobic or anaerobic fermentation.
DOI: 10.6084/m9.figshare.19960038
title: Additional file 1 of Adiposity and grip strength: a Mendelian randomisation study in UK Biobank

description: Additional file 1: Tables S1-S8. Table S1. R-squared and F-statistic of adiposity genetic instruments. Table S2. Summary statistics describing SNP associations with (i) adiposity exposures (BMI, BF%, WC and WHR) and (ii) grip strength. Table S3. Correlation coefficients between adiposity measures for males and females: (a) phenotypic correlations, (b) genetic correlations. Table S4. Mean difference (95% CI) in grip strength (kg) by markers of total and central adiposity. Table S5. Mean difference (95% CI) in grip strength (kg) by markers of total and central adiposity, stratified by age. Table S6. Mean difference (95% CI) in grip strength (kg) by markers of total and central adiposity: exploring pleiotropy. Table S7. Estimation of bias due to sample overlap. Table S8. MR PRESSO Outlier correction.
DOI: 10.6084/m9.figshare.19959982.v1
title: Additional file 7 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 7: Table S2. The detail information of reannotated CAT proteins.
DOI: 10.6084/m9.figshare.19959979.v1
title: Additional file 6 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 6: Table S1. The detail information of CAT genes in each species.
DOI: 10.6084/m9.figshare.10001609
title: MOESM6 of Circular RNA FOXP1 promotes tumor progression and Warburg effect in gallbladder cancer by regulating PKLR expression

description: Additional file 6. Proteins are identified by LC-MS that specifically associated with circFOXP1.
DOI: 10.6084/m9.figshare.19959985
title: Additional file 8 of Evolution and functional diversification of catalase genes in the green lineage

description: Additional file 8: Table S3. The details imformation of bacteria, protists, fungi and animals
DOI: 10.6084/m9.figshare.19959984.v1
title: Additional file 5 of Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets

description: Additional file 5: Figure S6. Effects of P. pentosaceus SMM914 on (a) growth performance, (b) organ relative weight and intestine length in piglets. Data are the mean ± s.e.m. Statistical analysis was conducted by using one-way ANOVA. Data not sharing the same letter in each point were significantly different (p &lt; 0.05). Figure S7. Effects of P. pentosaceus SMM914 on serum biochemical parameters. Data are the mean ± s.e.m (n = 7). One-way ANOVA with adjustment for multiple comparisons was conducted. a,b Within a variable, values with different superscripts differ (p &lt; 0.05). Figure S8. (a) In HepG2 cell and (b) IPEC-J2 cell, western blotting experiments were to determine the effect of P. pentosaceus SMM914 in MRS broth after 24h fermentation on the protein level of Nrf2. (c) The relative changes in protein intensity were analyzed with unpaired Student’s t-test. Different letters in a graph indicate significant statistical differences (p &lt; 0.05, n = 3).
DOI: 10.15156/bio/sh1256081.08fu
title: SH1256081.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1256082.08fu
title: SH1256082.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.