cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/m4ctmxy37h
title: Data from two experiments investigating the impact of handedness and effector strength on a compatibility effect between physical stimulus size and left/right responses

description: Humans respond more quickly with the left hand to a small stimulus, and with the right hand to a large stimulus, as compared to the reverse mapping (SSARC effect). We investigated the hypothesis that strength differences between the hands contribute to the origin of this effect. Therefore, 80 left-handers and 80 right-handers participated in two experiments. In Experiment 1, participants performed a manual choice-response task where we manipulated the mapping between physical stimulus size and response hand. In addition, we measured the strengths of participants’ left and right effectors (i.e., finger, hand, arm). In Experiment 2, we measured the SSARC effect in vocal responses in the same sample. There were four main results. First, participants’ dominant effectors were stronger than their non-dominant effectors. Second, the SSARC effect occurred in manual and vocal responses with similar size. Third, in both modalities, the SSARC effect was larger in right-handers than in left-handers. Finally, strength differences between effectors (fingers, hands) correlated with the size of the SSARC effect. In sum, results support the hypothesis that functional differences between the hands contribute to the origin of the SSARC effect. In addition, the results suggest that multiple size-space assocations may exist in parallel, or that space-size associations have generalized across motor systems, and formed a modality-independent association.
DOI: 10.3535/3pj-0e2-20j
title: †Homotrypa similis Foord, 1883

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gte-jt5-atc
title: †Diplotrypa Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13325225.v1
title: Sample_Mask_dataset

description: Mask dataset from kaggle
DOI: 10.3535/tdv-hab-vhh
title: †Homotrypa similis Foord, 1883

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ywk-qkg-6da
title: †Champlainopora Ross, 1970

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l1l-jcp-043
title: †Batostoma Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wnk-6pb-5kt
title: †Vasalemmapora incrassata (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/75s-jjt-fxd
title: †Dybowskites clavus (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a9l-4w6-ar1
title: †Ceramoporella Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s9y-wq9-m5q
title: †Homotrypa similis Foord, 1883

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xra-nbe-s2f
title: †Anaphragma mirabile cognatum Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z99-kn6-q0a
title: †Hallopora Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8nd-0zl-exv
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r92-a23-kly
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14151854.v2
title: RAIG COVID19 compiled dataset.zip

description: Chest X-ray images were selected from a database of chest X-ray images for COVID-19 positive cases along with normal and viral pneumonia images which were collated by researchers from Qatar University and the University of Dhaka along with collaborators from Pakistan and Malaysia and some medical doctors. In their current release, there are 219 COVID-19 positive images, 1341 normal images and 1345 viral pneumonia images (Chowdhury et al., 2020). To ensure multiple representations, the dataset of chest X-ray images for both COVID-19 and normal cases were also selected from Mendeley dataset repository (El-Shafai, 2020) which contains 5500 Non-COVID X-ray images and 4044 COVID-19 X-ray images. This study, therefore, adopted these multi source datasets. Due to limited computing resources, in this study, 1,300 images were selected from each category. That is, 1,300 images of COVID-19 positive cases, 1,300 Normal images and 1,300 images of viral pneumonia cases, totaling 3,900 images in all. It is noted here that further descriptions of the datasets were not provided by the authors of the sources of the datasets.<br>El-Shafai, Walid; Abd El-Samie, Fathi (2020), “Extensive COVID-19 X-Ray and CT Chest Images Dataset”, Mendeley Data, V3, doi: 10.17632/8h65ywd2jr.3<br>Chowdhury, M. E., Rahman, T., Khandakar, A., Mazhar, R., Kadir, M. A., Mahbub, Z. B., . . . Reaz, M. B. (2020, March 29). Can AI help in screening Viral and COVID-19 pneumonia? Retrieved from https://arxiv.org/abs/2003.13145; https://www.kaggle.com/tawsifurrahman/covid19-radiography-database
DOI: 10.17632/z685kkn249
title: Joo et al., "ATR Promotes Clearance of Damaged DNA and Damaged Cells by Rupturing Micronuclei"

description: Representative images and western blot to go along with the paper "ATR Promotes Clearance of Damaged DNA and Damaged Cells by Rupturing Micronuclei"
DOI: 10.3535/0jt-8j9-nqq
title: Eigia Soják

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vzx-3xc-4la
title: †Vasalemmapora mickwitzi (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3xt-jht-mlx
title: †Hemiphragma pygmaeum Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zz3-y3c-7r2
title: †Hallopora Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.9742337.v2
title: Dataset and code (Matlab) for recoloring images

description: The dataset and the corresponding code (Matlab) can be used for recoloring images, thus helping the people with Color Vision Deficiencies (CVD) recognize and communicate color information. Please cite the following paper if you wish to use our dataset and code: Yulun Wang, Duo li, Menghan Hu, Liming Cai, Guangtao Zhai. Non-local Recoloring Algorithm for Color Vision Deficiencies with Naturalness and Detail Preserving (Unpublished paper, will be updated later). <br>If you have any questions, you can send a request to: humenghan89@163.com
DOI: 10.3535/qg2-apq-418
title: †Orbignyella Ulrich & Bassler, 1904

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t34-zap-dqd
title: Eigia Soják

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1083611.v1
title: Readme file for Lowland Stream Restoration dataset

description: The readme file explains the structure of the Lowland Stream Restoration dataset
DOI: 10.6084/m9.figshare.21387351.v2
title: Metadata review - Manually curated dataset

description: This is a manually curated dataset of metadata downloaded off GenBank. The metadata is information pertaining to plant-associated fungal communities from marker gene sequences.
DOI: 10.6084/m9.figshare.28092665.v1
title: Tree Density Dataset of Mountainous Regions in Northeast China

description: This dataset represents tree densities in mountainous regions of Northeast China, derived from field surveys of trees with a diameter at breast height (DBH) of ≥10 cm across 1926 plots. Using recursive feature elimination (RFE), six key variables influencing tree density were identified: soil silt content, soil clay content, elevation, NDVI, precipitation in the wettest month, and precipitation in the coldest quarter. A stacking ensemble learning algorithm, combining extreme random trees (ERT), support vector regression (SVR), CatBoost, and a ridge regression metamodel, was used for tree density estimation. The algorithm significantly improved model performance, with an average R² increase of 43.69% and reductions in RMSE and MAE by 11.16% and 10.14%, respectively. The dataset includes a 30 m spatial resolution map of tree densities, estimating approximately 27.497 billion trees in the region. This dataset provides valuable insights for forest carbon sequestration modeling, targeted forest conservation strategies, and carbon management practices.
DOI: 10.6084/m9.figshare.7215713.v1
title: Growth and Accumulation of Nutrients by Weeds, in Maize and Legumes Intercrops

description: ABSTRACT: The presence of weeds on fields is a concern for farmers, due to competition with the commercial crops, reducing yields. The intercropping of maize with legumes provides weed control; after senescence, the nutrients accumulated by plants are released, recycling nutrients. The study of plant species and their diversity is called phytosociology. This study aimed at evaluating the accumulation of dry phytomass by maize intercropped with legumes and weeds species, and at evaluating nutrient cycling and the phytosociology of weeds. The experiment consisted of maize intercropped with legumes cover crops: jack-beans, Brazilian jack-beans, velvet bean, lablab-beans, and pigeon pea, and the control treatment (maize without intercrop), all without chemical or mechanical weed control. Maize was sown in the plots, and legumes were sown 64 days after maize. Maize was harvested 120 days after sowing (DAS), and legumes at 144 DAS. Weeds were sampled at 84 and 144 DAS. It was possible to evaluate the accumulation of dry phytomass, the nutrient content of the intercrop components, and the phytosociology of weeds. The phytomass accumulation by maize was not affected by the intercrop with legumes. The intercrop with velvet bean accumulated higher dry phytomass and suppressed weeds. Jack beans accumulated dry mass, but did not suppress weeds. The intercropping system changed the diversity of weeds. Panicum maximum, Commelina nudiflora, Commelina benghalensis, Leonotis nepetaefolia and Melampodium divaricatum stood out by presenting higher values of phytosociological index and nutrient recycling.
DOI: 10.17632/h5thpw98f9
title: Muc25 raw data

description: This is the raw data of Muc25 submission for Virulence.
DOI: 10.3535/8eq-4x7-vaj
title: †Hallopora tolli Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rgw-cyw-3j1
title: †Orbignyella Ulrich & Bassler, 1904

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21258261.v3
title: Supplementary Data for 'Himalayan zircons resurface in Sumatran arc volcanism through sediment recycling'

description: Supplementary Data 1 to 5 for manuscriopt 'Himalayan zircons resurface in Sumatran arc volcanism through sediment recycling'
DOI: 10.3535/7vq-wgn-3ev
title: †Homotrypa similis Foord, 1883

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t3g-0lk-f1v
title: †Crepipora uxnormensis (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.17701460.v1
title: Low-carbon supply chain network design under the risk of uncertain supply disruptions

description: <b> Data of the paper "Low-carbon supply chain network design under the risk of uncertain supply disruptions"</b>
DOI: 10.3535/nvd-8k1-txe
title: †Hallopora Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/snm-xsw-ra5
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25130162.v1
title: Axial catalog

description: ML earthquake catalog for Axial Seamount
DOI: 10.6084/m9.figshare.4620622.v1
title: Empirical data for simulations from Cancer cells exhibit clonal diversity in phenotypic plasticity

description: Data used for simulations of clones under different treatments. Contains growth rate, estimated cell count, and log2(epithelial/mesenchymal) ratio for each clone.
DOI: 10.6084/m9.figshare.8205356.v1
title: Data required to run HhsFunctionalRankings workflow

description: These data are used in the workflow relating to the manuscript "Integrating Network-based Functional Enrichment with Genetic Association to Prioritize Causal Genes in Quantitative Trait Loci." <br>The workflow is published at: https://github.com/MahoneyLab/HhsFunctionalRankings<br>Two files are included here:HhsFunctionalPrioritizationData.tar.gzHhsFunctionalPrioritizationResults.tar.gz<br><br>The Data file contains all data used in the workflow. The Results file contains all final and intermediate results produced by the workflow.<br>These zipped files must be unzipped prior to running the workflow. They will create directories called "data" and "results" respectively. When placed in the workflow parent directory, they will be visible to the code in the workflow.
DOI: 10.3535/75b-tb0-9vy
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ve2-yhx-1gd
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d193
title: Ex10R55 Arc-5 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.3535/h0j-s5d-cre
title: †Hallopora tolli Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/msc7y37ttr
title: Financialization - data of non- financial companies

description: Annual data of non-financial companies listed on China's stock exchanges from 2008 to 2022 (Exclude ST, PT, delisting, missing financial data and samples of insolvent enterprises),The data contain all variables required for the empirical analysis.
DOI: 10.3535/ab5-hxt-0w4
title: †Hemiphragma Ulrich, 1893

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jt7-phe-az5
title: †Ceramoporella Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mp9-6lm-qe9
title: †Dybowskites clavus (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/paw-6ql-w49
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3566172.v1
title: Appendix F. Linear mixed-effects time-series models for forage (herbaceous and shrub) biomass exposure for migrant and resident elk GPS locations, 2002–2004.

description: Linear mixed-effects time-series models for forage (herbaceous and shrub) biomass exposure for migrant and resident elk GPS locations, 2002–2004.
DOI: 10.17632/yytybr3t4y
title: Metabolomics dataset of 44 Propionibacterium freudenreichii for Scoary2

description: 44 yogurts were produced, each by combining a different (sequenced) Propionibacterium freudenreichii strain with the same starter culture (Yoflex® YC-381). The metabolomes of these yogurts were measured using liquid chromatography MS (LC-MS) and gas chromatography MS (GC-MS), the latter measuring the yogurt’s volatile metabolites (volatiles). The aim of this study was to investigate the effect of the pan-genome of the added bacterial strains on the phenotype of the yogurts. We discovered two genes affecting carnitine metabolism.

This data was analyzed using Scoary2: https://github.com/MrTomRod/scoary-2/wiki/Output#example-output

File descriptions:
- traits_44_noraw.tsv: corrected and filtered metabolomics data. Includes lc-ms as well as gc-ms volatiles data
- traits_info_44_noraw.tsv: metadata about the measured metabolites, e.g. m/z, retention times, descriptions, putative HMDB IDs, etc.
- isolate_info_44.tsv: links each sample to its species, in this case, all samples are Propionibacterium freudenreichii.
- N0.tsv: a list of Hierarchical Orthogroups (HOGs) that groups orthologous genes together. It was created using OrthoFinder v2.5.4 based on protein FASTA files.
- N0_best_names.tsv: maps each HOG to a putative description
DOI: 10.3535/57b-znk-53z
title: †Esthoniopora communis Bassler, 1911

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lt6-6d9-2rc
title: †Revalotrypa gibbosa (Bassler, 1911)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7963820.v1
title: The tea plant reference genome and improved gene annotation using long-read and paired-end sequencing data

description: Tea is a globally consumed non-alcohol beverage with great economic importance. Lacking of the reference genome has largely hampered the utilization of the precious tea plant genetic resources towards breeding. To address this, we generated a high-quality reference genome of tea plant using Illumina and PacBio sequencing technology that totally produced 2,124 Gb (~700-fold coverage) short and 125 Gb (~41-fold) long read data, respectively. We employed a hybrid strategy to assemble the genome that has been publicly released. We here described the data framework used to generate, annotate and validate the genome assembly. Besides, we re-predicted the protein-coding genes and annotated their putative functions using more complete omics datasets and improved training models. We reassessed the assembly and annotation quality using the latest version of BUSCO. These data can be used to develop new methodologies/tools for better assembly of complex genomes, aid in finding of novel genes, variations and evolutionary clues associated with tea quality, and thus help to breed new varieties with high yields and quality in the future.
DOI: 10.25955/5c2d8cf06a33a
title: Surf bather drowning risk analysis

description: Eighteen lifeguards or surfers judged surf bather drowning putative risk factors based on their experience in surf activities. Each judge rated the likelihood of a person requiring rescue in 27 scenarios in a Latin square arrangement for unique combinations of three levels for swimming ability, surf bathing experience and wave height, with replication.<br>All factors provided unique contributions to drowning risk (pEthical approval was granted by the Monash University Standing Committee on Ethics in Research Involving Humans.
DOI: 10.3535/lk3-j7n-dny
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pvl-zxb-17t
title: †Dittopora colliculata (Eichwald, 1856)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pzm-17c-xfz
title: †Dianulites Eichwald, 1829

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xh62fn8yrp
title: Supporting Information: Resolving Tectonic Mosaics with Cost-Effective Tomography: A 3D P-Wave Model of the Crust and Uppermost Mantle Beneath the Malay Peninsula

description: Description of the files

1. Data.txt: converted format of (a) arrival time dataset from the International Seismological Center (ISC) archives in the period from 1982 to 2024 for earthquakes with magnitude (mb) greater than or equal to 3.0, and (b) manual picks from waveforms that are downloaded from the Incorporated Research Institutions for Seismology (IRIS) online repository. 

2. Figures.doc: Supplementary figures referenced in the manuscript

3. Hainan_stn.txt, Hainan_data.txt, : Stations and Pn arrival times published by Lu et al. (2022) for Hainan Island. Original version is available at https://doi.org/10.5281/zenodo.5976028

4. Model_3D.txt: the P-wave model for the Malay Peninsula as well as S-wave, density, and Poisson's ratio derived using empirical relationships. 

5. Patameter_setting.inc: This file contains the settings of all parameters used in the inversion.

6. Residuals.txt: The residuals for the present study (RCAL) and those from ISC (REIN) are listed in columns 9 and 10, respectively, for corresponding events and arrivals. Travel-time residuals for SEISAN-located events are assigned an arrival ID of "20000001."

7. Stations.dat: a list of stations within the study area.

8. Vel_1D.dat: Global 1D velocity models including the ak135

9. The executable program to produce the P-wave model and other outputs.
DOI: 10.3535/16t-fqh-scg
title: †Oanduella antiqua Mannil, 1958

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qf0-wkq-qgx
title: †Enallopora oepiki Männil, 1958

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.817940.v2
title: GBT 6cm Observations of "The Brick"

description: 6cm observations of G0.253+0.016, AKA "The Brick" or "The Lima Bean" taken as part of project GBT12B/221. Three spectral line cubes are include: H2CO at 4.829 GHz, H213CO at 4.3888 GHz, and H110a at 4.874157 GHz. Other RRLs were detected, but not carefully reduced. Baseline subtraction was performed by interpolating across the line-containing region; there is therefore some uncertainty in the true baseline (continuum) level. The data reduction software used is freely available: https://github.com/keflavich/gbtpy
DOI: 10.6084/m9.figshare.8963963.v1
title: isfmmalawi_midline_survey.zipISFM Malawi

description: Midline DatasetThis dataset contains information on updated household composition, networks, knowledge about ISFM, participation in program activities, adoption plans, beliefs regarding yields, input-output modules per plot, and marketing. Please refer codebook_midline for more information.The following variables have been dropped from the original data files wherever relevant. This has been done in compliance with de-identification protocol.<br>
DOI: 10.13145/bacdive100245.20241212.9.2
title: Mycetohabitans rhizoxinica

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.