cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10229090
title: System transferability of a Raman-based oesophageal tissue classification

description: This dataset contains 560819 Raman spectra (Uncorrected_MedianFiltered_SizeMatched_SMART_x) taken from 61 oesophageal samples (sampleID) representing 51 patients (patientID). The data was acquired across three independent sites (centre) using the same make of spectrometer - Renishaw RA816 Biological Analyser (Renishaw plc, Wotton-under-edge, UK). Ostensibly the same sample was collected by all three sites (three adjacent FFPE tissue slices were obtained and regions of interest were identified by a histopathologist on one of the centres). The samples belong to one of 5 pathology classes: NSQ (0), IM(1), LGD(2), HGD(3) and AC(4).
DOI: 10.5281/zenodo.10229089
title: System transferability of a Raman-based oesophageal tissue classification

description: This dataset contains 560819 Raman spectra (Uncorrected_MedianFiltered_SizeMatched_SMART_x) taken from 61 oesophageal samples (sampleID) representing 51 patients (patientID). The data was acquired across three independent sites (centre) using the same make of spectrometer - Renishaw RA816 Biological Analyser (Renishaw plc, Wotton-under-edge, UK). Ostensibly the same sample was collected by all three sites (three adjacent FFPE tissue slices were obtained and regions of interest were identified by a histopathologist on one of the centres). The samples belong to one of 5 pathology classes: NSQ (0), IM(1), LGD(2), HGD(3) and AC(4). 

Included in this version is the protocol used to collect this data, particularly focused on the aquisition of Raman spectra.
DOI: 10.5281/zenodo.10405264
title: System transferability of a Raman-based oesophageal tissue classification

description: This dataset contains 560819 Raman spectra (Uncorrected_MedianFiltered_SizeMatched_SMART_x) taken from 61 oesophageal samples (sampleID) representing 51 patients (patientID). The data was acquired across three independent sites (centre) using the same make of spectrometer - Renishaw RA816 Biological Analyser (Renishaw plc, Wotton-under-edge, UK). Ostensibly the same sample was collected by all three sites (three adjacent FFPE tissue slices were obtained and regions of interest were identified by a histopathologist on one of the centres). The samples belong to one of 5 pathology classes: NSQ (0), IM(1), LGD(2), HGD(3) and AC(4). 

Included in this version is the protocol used to collect this data, particularly focused on the aquisition of Raman spectra.
DOI: 10.17037/data.00003475
title: Clinical codelist - wrist fracture - gold

description: Read codes for wrist fracture.
DOI: 10.23670/irj.2023.138.217.1
title: Взаимодействие моноАТ к В/Массачусетс/2/12 с различными штаммами вируса гриппа В в РТГА

description: Международный научно-исследовательский журнал, Выпуск 12 (138) 2023
DOI: 10.23670/irj.2023.138.217.3
title: Взаимодействие эскейп-мутантов вируса B/Массачусетс/2/12 с моноАТ в РТГА

description: Международный научно-исследовательский журнал, Выпуск 12 (138) 2023
DOI: 10.25500/edata.bham.00001043
title: Data to accompany "Laser capture microdissection and native mass spectrometry for spatially-resolved analysis of intact protein assemblies in tissue"
DOI: 10.6084/m9.figshare.23684191
title: Assessment of infection probability indices for airborne diseases in confined spaces: combination of CFD and analytical modelling

description: The paper presents a framework for probabilistic assessment of likelihood of infection from airborne diseases in confined spaces which are continuously occupied for relatively long periods (e.g., school classrooms). The proposed approach is based on a combination of computational fluid dynamics (CFD) pre-calculations and analytical post-processing, to define relevant indices of infection probability. The practical applicability of the method is demonstrated through a case study, where different ventilation scenarios are considered for a school classroom. Corresponding infection probability indices are determined globally for the group of occupants. Furthermore, since the method does not rely on the well-mixing assumption, local probability indices are determined for each occupied location. The obtained results confirm the intuition that an increase of ventilation and/or air filtration reduces the overall likelihood of infection, though the observed positive effect is not uniform within the space. The presented methodology can also be considered as complementary to simpler approaches.
DOI: 10.6084/m9.figshare.23684191.v2
title: Assessment of infection probability indices for airborne diseases in confined spaces: combination of CFD and analytical modelling

description: The paper presents a framework for probabilistic assessment of likelihood of infection from airborne diseases in confined spaces which are continuously occupied for relatively long periods (e.g., school classrooms). The proposed approach is based on a combination of computational fluid dynamics (CFD) pre-calculations and analytical post-processing, to define relevant indices of infection probability. The practical applicability of the method is demonstrated through a case study, where different ventilation scenarios are considered for a school classroom. Corresponding infection probability indices are determined globally for the group of occupants. Furthermore, since the method does not rely on the well-mixing assumption, local probability indices are determined for each occupied location. The obtained results confirm the intuition that an increase of ventilation and/or air filtration reduces the overall likelihood of infection, though the observed positive effect is not uniform within the space. The presented methodology can also be considered as complementary to simpler approaches.
DOI: 10.6084/m9.figshare.21678963
title: Nature of science in students’ discussions on disagreement between scientists following a narrative about health effects of the Fukushima Daiichi accident

description: We explored the potential for addressing nature of science through a historic narrative about disagreement between researchers concerning a socio-scientific issue, incidence of juvenile thyroid cancer following the Fukushima Daiichi nuclear accident. The narrative was developed from authentic sources and tested in two cycles. Eight groups of three to four high-school students were audio recorded. Transcripts were analyzed regarding what nature of science emerged in the discussions and what understanding about NOS could be discerned, using three complementary NOS-frameworks (Consensus-NOS, Whole Science-NOS, FRA-NOS). Together, the student groups touched upon 19 different NOS-themes as they tried to make sense of the disagreement related in the narrative. All groups addressed a common core of NOS-themes, most of which were central to the narrative itself, although some themes that were not part of the narrative also emerged. Students displayed a basic understanding of the tentative, empirical, and subjective nature of science together with the role of evidential relevance and completeness of evidence related to the choice of scientific methods. On the other hand, students did not reckon with peer review as a means for establishing knowledge and resolving disagreement. Moreover, although students readily accepted disagreement as a basic property of science, they had difficulty handling this disagreement when coping with the SSI in the narrative. We discuss how the combination of history of science-in-the-making and SSI in narrative form offers opportunities to teach NOS without risking simplified messages of how scientific knowledge develops or how science can be used to address socio-scientific issues.
DOI: 10.6084/m9.figshare.21678963.v1
title: Nature of science in students’ discussions on disagreement between scientists following a narrative about health effects of the Fukushima Daiichi accident

description: We explored the potential for addressing nature of science through a historic narrative about disagreement between researchers concerning a socio-scientific issue, incidence of juvenile thyroid cancer following the Fukushima Daiichi nuclear accident. The narrative was developed from authentic sources and tested in two cycles. Eight groups of three to four high-school students were audio recorded. Transcripts were analyzed regarding what nature of science emerged in the discussions and what understanding about NOS could be discerned, using three complementary NOS-frameworks (Consensus-NOS, Whole Science-NOS, FRA-NOS). Together, the student groups touched upon 19 different NOS-themes as they tried to make sense of the disagreement related in the narrative. All groups addressed a common core of NOS-themes, most of which were central to the narrative itself, although some themes that were not part of the narrative also emerged. Students displayed a basic understanding of the tentative, empirical, and subjective nature of science together with the role of evidential relevance and completeness of evidence related to the choice of scientific methods. On the other hand, students did not reckon with peer review as a means for establishing knowledge and resolving disagreement. Moreover, although students readily accepted disagreement as a basic property of science, they had difficulty handling this disagreement when coping with the SSI in the narrative. We discuss how the combination of history of science-in-the-making and SSI in narrative form offers opportunities to teach NOS without risking simplified messages of how scientific knowledge develops or how science can be used to address socio-scientific issues.
DOI: 10.25934/pr00004732.0
title: Available datapackage for study 'A Phase II, Placebo-controlled, Double-blind, Randomized Trial to Evaluate the Anti-bacterial Activity, Safety, and Tolerability of TMC207 in Subjects With Newly Diagnosed Sputum Smear-positive Pulmonary Infection With Multi-drug Resistant Mycobacterium Tuberculosis (MDR-TB).'

description: The objective of this study is to demonstrate that the antibacterial activity of TMC207 is better than placebo when added to a standardized Background Regimen (BR) for treatment of multi-drug resistant TB. Also safety and tolerability will be evaluated.
DOI: 10.5281/zenodo.10405489
title: Deep mantle component and continental crust remobilization in the source of Vesteris Seamount, East Greenland margin
DOI: 10.5281/zenodo.8014372
title: Co-Creation Methods Inventory: Sourced from Academic and Grey Literature

description: Introducing the Co-Creation Methods Inventory. Discover an open-access dataset containing a vast collection of co-creation methods. This resource is the culmination of meticulous research and ongoing analysis, drawing from diverse co-creation projects and references. Within this dataset, you will find 765 co-creation methods sourced from the Health CASCADE Co-Creation Database and grey literature sources. Each method is accompanied by a description and a reference.

This initial dataset is meticulously curated to support and enhance your co-creation processes. Whether you are engaged in co-creation, co-design, co-production, or participatory research, these methods offer valuable insights and approaches. This dataset is a precursor to the forthcoming academic articles by Agnello DM et al., scheduled for publication in 2024.

For any inquiries or further information about the dataset, please feel free to reach out to Danielle Marie Agnello at danielle.agnello@gcu.ac.uk. Additionally, join the conversation and stay updated on her work by following her on Twitter: https://twitter.com/DannyAgnello_GH. To delve deeper into the Health CASCADE Co-Creation Database, follow this link: https://doi.org/10.2196/45059. For additional support in utilizing these co-creation methods, explore our Draft Evidence-based Co-Creation Guideline: PRODUCES+ at https://doi.org/10.5281/zenodo.7343029. Finally, if you're interested in understanding more about how these methods align with co-creation characteristics, please take a look at this pre-print manuscript about the Co-Creation Rainbow framework: https://zenodo.org/records/10391410.  

Unlock the potential of co-creation methods and embark on a collaborative research journey with confidence, creativity and innovation!
DOI: 10.6084/m9.figshare.24865773
title: Data for the manuscript (i.e., Impact-melt-crystallized magnetite on the Moon).

description: Here, we provide the supporting information about the petrological and geochemical data of the impact melt breccia and the studied magnetite-bearing impact glass fragment. In addition, remote-sensing data for the impact melts associated with magnetic anomalies on the Moon is also provided. Text S1 is the thermodynamic calculation for electron exchange reaction. Figures S1 to S5 are petrological and geochemical features of the impact melt breccia and the studied magnetite-bearing impact glass. Remote-sensing observation of the impact melts associated with magnetic anomalies on the Moon is also provided in Figure S6 and Figure S7. Table S1 is the EPMA result of the magnetite-bearing impact glass. Table S2 describes that characteristics of the impact-melt-crystallized magnetite are mostly consistent with impact-melt-crystallization formation mechanism. Table S3 is the EDS result of the metallic iron particle embedded in the impact glass. Table S4 summarizes information for those impact melts associated with magnetic anomalies on the Moon.
DOI: 10.5281/zenodo.10129941
title: Dataset
DOI: 10.5281/zenodo.10405529
title: Dataset for intelligent fault detection
DOI: 10.5281/zenodo.10405561
title: Dataset
DOI: 10.5281/zenodo.10218665
title: Dataset related to: "Functional ability before and after rehabilitation in elderly patients with shortening and/or rotational deformity of the lower limb after hip fracture"

description: We provide the raw data used for the following article:
Gialanella B, Santoro R, Prometti P, Monguzzi V, Comini L. Functional ability before and after rehabilitation in elderly patients with shortening and/or rotational deformity of the lower limb after hip fracture. PM R. 2023 Sep;15(9):1106-1114. doi: 10.1002/pmrj.12910. 
Abstract
Background: Shortening and rotational deformity of the lower limb (SRD) is a major complication of hip fracture surgery. It causes not only hip joint dysfunction but also functional impairments due to abnormal gait parameters, decreased gait velocity, and poor balance. Despite a number of previous studies, the effect of SRD on the postsurgical recovery of these patients is still not clear.
Objective: To compare the functional abilities and balance before and after rehabilitation for people with and without SRD after hip fracture surgery and to assess whether SRD affects rehabilitation.
Design: Prospective observational study.
Setting: Inpatients of a rehabilitation unit.
Participants: A total of 102 people with hip fracture (62 without SRD and 40 with SRD at the time of admission to the unit).
Main outcome measures: Berg Balance Scale (BBS) and Functional Independence Measure (FIM) motor score, administered before and after rehabilitation.
Interventions: Motor rehabilitation.
Results: Before rehabilitation, patients with SRD had lower motor-FIM (p = .002) and BBS (p = .001) scores than those without SRD. After rehabilitation, both groups showed similar improvements in motor-FIM, BBS, range of motion, muscle strength, and pain scores (p < .001, for all), but patients with SRD still had lower motor-FIM and BBS scores (p = .014 and .003, respectively) and lower effectiveness in motor-FIM and BBS (p = .039 and p = .034, respectively) than those without SRD.
Conclusions: SRD is associated with lower levels of balance and functional abilities before and after rehabilitation and it adversely affects rehabilitation for patients with hip fractures.
DOI: 10.5281/zenodo.10218664
title: Dataset related to: "Functional ability before and after rehabilitation in elderly patients with shortening and/or rotational deformity of the lower limb after hip fracture"

description: We provide the raw data used for the following article:
Gialanella B, Santoro R, Prometti P, Monguzzi V, Comini L. Functional ability before and after rehabilitation in elderly patients with shortening and/or rotational deformity of the lower limb after hip fracture. PM R. 2023 Sep;15(9):1106-1114. doi: 10.1002/pmrj.12910. 
Abstract
Background: Shortening and rotational deformity of the lower limb (SRD) is a major complication of hip fracture surgery. It causes not only hip joint dysfunction but also functional impairments due to abnormal gait parameters, decreased gait velocity, and poor balance. Despite a number of previous studies, the effect of SRD on the postsurgical recovery of these patients is still not clear.
Objective: To compare the functional abilities and balance before and after rehabilitation for people with and without SRD after hip fracture surgery and to assess whether SRD affects rehabilitation.
Design: Prospective observational study.
Setting: Inpatients of a rehabilitation unit.
Participants: A total of 102 people with hip fracture (62 without SRD and 40 with SRD at the time of admission to the unit).
Main outcome measures: Berg Balance Scale (BBS) and Functional Independence Measure (FIM) motor score, administered before and after rehabilitation.
Interventions: Motor rehabilitation.
Results: Before rehabilitation, patients with SRD had lower motor-FIM (p = .002) and BBS (p = .001) scores than those without SRD. After rehabilitation, both groups showed similar improvements in motor-FIM, BBS, range of motion, muscle strength, and pain scores (p < .001, for all), but patients with SRD still had lower motor-FIM and BBS scores (p = .014 and .003, respectively) and lower effectiveness in motor-FIM and BBS (p = .039 and p = .034, respectively) than those without SRD.
Conclusions: SRD is associated with lower levels of balance and functional abilities before and after rehabilitation and it adversely affects rehabilitation for patients with hip fractures.
DOI: 10.5281/zenodo.10405595
title: Dataset for intelligent fault detection
DOI: 10.5281/zenodo.10405596
title: Dataset for intelligent fault detection
DOI: 10.6084/m9.figshare.24865845
title: In-Depth Interviews and Focus Group Discussions (IDEaL and ENGAGE)

description: Data reported in mansuscript 'Core components of male-specific person-centered care: a qualitative analysis from client and healthcare worker perspectives in Malawi.' Qualitative interview transcripts for both male client in-depth interviews and focus group discussions with participating healthcare workers.
DOI: 10.6084/m9.figshare.24865845.v1
title: In-Depth Interviews (IDEaL and ENGAGE)

description: Core components of male-specific person-centered care: a qualitative analysis from client and healthcare worker perspectives in Malawi. Qualitative data set.
DOI: 10.6084/m9.figshare.24715761
title: TopVIP_input_output

description: All the datasets tested in the article "Accurate top protein variant discovery via low-N pick-and-validate machine learning".
DOI: 10.6084/m9.figshare.24715761.v1
title: TopVIP_input_output

description: All the datasets tested in the article "Accurate top protein variant discovery via low-N pick-and-validate machine learning".
DOI: 10.5281/zenodo.10405485
title: Communal Singing in Denmark 2022
title: Survey data

description: This comprehensive dataset is derived from a large-scale survey focused on communal singing (fællessang) in Denmark. Recently, this cultural practice has garnered significant attention, especially during the COVID-19 lockdowns. Despite its growing prominence, there has been a lack of empirical data concerning the extent, diversity, contexts, and perceptions surrounding communal singing in Denmark—until now. The dataset, compiled from responses of 2,031 Danish adults in October 2022 through a collaboration with YouGov Denmark, offers valuable insights into the current state of singing practices and attitudes among the Danish population. This dataset forms the basis for ongoing research projects and forthcoming publications by the Unit for Song Studies at Aarhus University. The dataset contains a detailed spreadsheet of the survey's comprehensive findings.
DOI: 10.5281/zenodo.10405486
title: Communal Singing in Denmark 2022
title: Survey data

description: This comprehensive dataset is derived from a large-scale survey focused on communal singing (fællessang) in Denmark. Recently, this cultural practice has garnered significant attention, especially during the COVID-19 lockdowns. Despite its growing prominence, there has been a lack of empirical data concerning the extent, diversity, contexts, and perceptions surrounding communal singing in Denmark—until now. The dataset, compiled from responses of 2,031 Danish adults in October 2022 through a collaboration with YouGov Denmark, offers valuable insights into the current state of singing practices and attitudes among the Danish population. This dataset forms the basis for ongoing research projects and forthcoming publications by the Unit for Song Studies at Aarhus University. The dataset contains a detailed spreadsheet of the survey's comprehensive findings.
DOI: 10.5281/zenodo.10405018
title: Local activation of CA1 pyramidal cells induces theta phase precession

description: Example dataset used to demonstrate the algorithm for detecting and quantifying temporal phase precession of spikes, described in Sloin et al., 2023, "Local activation of CA1 pyramidal cells induced theta phase precession". The code is available at at: https://github.com/EranStarkLab/PhasePrecession. The full dataset for the paper is avaliable at: https://doi.org/10.5061/dryad.1c59zw431.
DOI: 10.5281/zenodo.10405019
title: Local activation of CA1 pyramidal cells induces theta phase precession

description: Example dataset used to demonstrate the algorithm for detecting and quantifying temporal phase precession of spikes, described in Sloin et al., 2023, "Local activation of CA1 pyramidal cells induced theta phase precession". The code is available at at: https://github.com/EranStarkLab/PhasePrecession. The full dataset for the paper is avaliable at: https://doi.org/10.5061/dryad.1c59zw431.
DOI: 10.5281/zenodo.10402245
title: Investigation of the properties of conductivity signals in BK channels by Empirical  Mode Decomposition

description: The idea of the project is the comprehensive time-frequency analysis of ion current data registered from BK channels of the different cell lines and measured under the different experimental conditions. Decomposition of signals into individual frequency modes and application of non-linear measures in the form of Information Entropy or Hurst exponent to individual signal components will allow for a more detailed analysis of the information hidden behind the complex ionic conduction sequences. The sample data contains patch-clamp sequences.
DOI: 10.5281/zenodo.10402246
title: Investigation of the properties of conductivity signals in BK channels by Empirical  Mode Decomposition

description: The idea of the project is the comprehensive time-frequency analysis of ion current data registered from BK channels of the different cell lines and measured under the different experimental conditions. Decomposition of signals into individual frequency modes and application of non-linear measures in the form of Information Entropy or Hurst exponent to individual signal components will allow for a more detailed analysis of the information hidden behind the complex ionic conduction sequences. The sample data contains patch-clamp sequences.
DOI: 10.34740/kaggle/dsv/7238122
title: 2021 World Population (updated daily)
DOI: 10.34740/kaggle/dsv/7238130
title: YouTube Trending Video Dataset (updated daily)