cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23166290.v2
title: SelfTargeting h5ad data encoded into 557 classes

description: filename is formated as : CellType_Repeat_Coding.h5ad h5ad with event counts stored in adata.X event description saved in adata.var meta data for each Guide-Target pair saved in adata.obs <br> To download and unzip the file copy the link address within terminal : wget --no-check-certificate LINK within terminal : mv 40867757 40867757.tar.gz tar -xzf 40867757.tar.gz <br>
DOI: 10.11583/dtu.12005943
title: A05&A06_Checklist of Sustainability Qualifying Criteria

description: Context: The tool Checklist of Sustainability Qualifying Criteria is one of the outcomes of the research project CIRCit. Objective: This tool aims to support companies in planning for changing their business models towards Circular Economy. In particular, it supports the activities "Conceptualise the Circular Economy business model" and "Configure a complete business model concept". How to use: <br> Detailed instructions about how to use the tool are provided in the Workbook 2 (see Activity 5 and Activity 6) available at http://circitnord.com/.
DOI: 10.11583/dtu.12005943.v3
title: A05&A06_Checklist of Sustainability Qualifying Criteria

description: Context: The tool Checklist of Sustainability Qualifying Criteria is one of the outcomes of the research project CIRCit. Objective: This tool aims to support companies in planning for changing their business models towards Circular Economy. In particular, it supports the activities "Conceptualise the Circular Economy business model" and "Configure a complete business model concept". How to use: <br> Detailed instructions about how to use the tool are provided in the Workbook 2 (see Activity 5 and Activity 6) available at http://circitnord.com/.
DOI: 10.11583/dtu.12005943.v2
title: A05&A06_Checlist of Sustainability Qualifying Criteria

description: Context: The tool Checlist of SUstianability Qualifying Criteria is one of the outcomes of the research project CIRCit. Objective: This tool aims to support companies in planning for changing their business models towards Circular Economy. In particular, it supports the activities "Conceptualise the Circular Economy business model" and "Configure a complete business model concept". How to use: <br> Detailed instructions about how to use the tool are provided in the Workbook 2 (see Activity 5 and Activity 6) available at http://circitnord.com/.
DOI: 10.5281/zenodo.7978178
title: Gene structure prediction results and execution commands and options by GINGER and similar tools

description: Gene structure prediction results, execution commands, and options by GINGER and similar tools genome.tar.gz ... genome sequence data used for benchmark test in the paper. input_of_EVM.tar.gz ... input dataset for EVM input_of_GINGER.tar.gz ... input dataset for GINGER input_of_MAKER.tar.gz ... input dataset for MAKER reference_annotation.tar.gz ... gff data used for benchmark test in the paper. result_of_EVM.tar.gz .... results and stats information of EVM (including intermediate result file of <em>C.elegans</em>, <em>D. melanogaster</em>, <em>O. sativa</em>, <em>D. rerio</em>, and <em>H. sapiens</em>) result_of_GINGER.tar.gz .... results and stats information of GINGER (including intermediate result files of <em>C.elegans</em>) result_of_MAKER.tar.gz .... results and stats information of MAKER (including intermediate result files of <em>C.elegans</em>)
DOI: 10.5281/zenodo.7978179
title: Gene structure prediction results and execution commands and options by GINGER and similar tools

description: Gene structure prediction results and execution commands and options by GINGER and similar tools
DOI: 10.5281/zenodo.8126530
title: Gene structure prediction results and execution commands and options by GINGER and similar tools

description: Gene structure prediction results, execution commands, and options by GINGER and similar tools genome.tar.gz ... genome sequence data used for benchmark test in the paper. input_of_EVM.tar.gz ... input dataset for EVM input_of_GINGER.tar.gz ... input dataset for GINGER input_of_MAKER.tar.gz ... input dataset for MAKER reference_annotation.tar.gz ... gff data used for benchmark test in the paper. result_of_EVM.tar.gz .... results and stats information of EVM (including intermediate result file of <em>C.elegans</em>, <em>D. melanogaster</em>, <em>O. sativa</em>, <em>D. rerio</em>, and <em>H. sapiens</em>) result_of_GINGER.tar.gz .... results and stats information of GINGER (including intermediate result files of <em>C.elegans</em>) result_of_MAKER.tar.gz .... results and stats information of MAKER (including intermediate result files of <em>C.elegans</em>)
DOI: 10.6084/m9.figshare.23649786.v1
title: Datasets by figure

description: Here are the original datasets corresponding to each of the figures of the publication. Some datasets are not fully uploaded due to limitations in the size of the storage, but they are available upon request from the authors.
DOI: 10.6084/m9.figshare.22794413
title: Two-dimensional Shiba lattices as a possible platform for crystalline topological superconductivity

description: Source data for the line plots of the main text and Extended Data figures of the paper "Two-dimensional Shiba lattices as a possible platform for crystalline topological superconductivity". <br> The repository contains the following python scripts: Open_Fig2_ED3.py -- Opens and plots the source data for Figure 2 and Extended Data Figure 3. This script uses the topographies_**.png files to display the position of the measured points in the lattice grid. Open_Fig3.py -- Opens and plots the source data for Figure 3. The distances corresponding to the rhombic and rectangular lattices are distinguished by different colours, and finally plotted together in terms of absolute distance from a reference site. Open_Fig4.py -- Opens and plots the source data for Figure 4. This plots the three ribbon spectra presented in Figure 4 of the main text, and then the open boundary conditions spectra of panel 4j. Open_ED1_ED2_ED5_ED6.py -- Opens and plots the source data for Extended Data Figures 1, 2, 5, 6. <br> Data files contained in the repository: Note that each .txt file contains a brief description of the content at the beginning of the file. In addition, the meaning of each column and rows is explained. Each comment line is marked by a "#" at the beginning of the line, and the file can be uploaded by numpy.loadtxt("filename"). <br> Data files for Figures 2, 3, 4 in the main text (only line plots): data_Fig2_SPS.txt -- Spectroscopic data of the 5 terminations (Figure 2). data_Fig2_positions.txt -- Positions of the points considered in the spectroscopic measurements (Figure 2). data_Fig3_rect.txt -- Ab initio Heisenberg coupling for the rectangular structure (Figure 3). data_Fig3_rhomb.txt -- Ab initio Heisenberg coupling for the rhombic structure (Figure 3). data_Fig4b_ribbonA1.txt -- Ribbon spectrum of the A1 termination (Figure 4). data_Fig4c_ribbonA2.txt -- Ribbon spectrum of the A2 termination (Figure 4). data_Fig4j_ribbonB1.txt -- Ribbon spectrum of the B1 termination (Figure 4). data_Fig4dupper_A3.txt -- Spectrum of the A3 termination (Figure 4). data_Fig4dlower_A3.txt -- Spectrum of the A3 termination with a larger size (Figure 4). <br> Extended data figure source data: data_ED1_a.txt -- Extended Data Figure 1a. data_ED1_b.txt -- Extended Data Figure 1b. data_ED2.txt -- Extended Data Figure 2. data_ED3.txt -- Extended Data Figure 3. data_ED5.txt -- Extended Data Figure 5. data_ED6_b.txt -- Extended Data Figure 6b. data_ED6_c.txt -- Extended Data Figure 6c. <br> Topographies of the five terminations considered in the paper: topography_A1.png -- Topographic image of the lattice termination A1 topography_A2.png -- Topographic image of the lattice termination A2 topography_A3.png -- Topographic image of the lattice termination A3 topography_B1.png -- Topographic image of the lattice termination B1 topography_B2.png -- Topographic image of the lattice termination B2
DOI: 10.6084/m9.figshare.22794413.v1
title: Two-dimensional Shiba lattices as a possible platform for crystalline topological superconductivity

description: Source data for the line plots of the main text and Extended Data figures of the paper "Two-dimensional Shiba lattices as a possible platform for crystalline topological superconductivity". <br> The repository contains the following python scripts: Open_Fig2_ED3.py -- Opens and plots the source data for Figure 2 and Extended Data Figure 3. This script uses the topographies_**.png files to display the position of the measured points in the lattice grid. Open_Fig3.py -- Opens and plots the source data for Figure 3. The distances corresponding to the rhombic and rectangular lattices are distinguished by different colours, and finally plotted together in terms of absolute distance from a reference site. Open_Fig4.py -- Opens and plots the source data for Figure 4. This plots the three ribbon spectra presented in Figure 4 of the main text, and then the open boundary conditions spectra of panel 4j. Open_ED1_ED2_ED5_ED6.py -- Opens and plots the source data for Extended Data Figures 1, 2, 5, 6. <br> Data files contained in the repository: Note that each .txt file contains a brief description of the content at the beginning of the file. In addition, the meaning of each column and rows is explained. Each comment line is marked by a "#" at the beginning of the line, and the file can be uploaded by numpy.loadtxt("filename"). <br> Data files for Figures 2, 3, 4 in the main text (only line plots): data_Fig2_SPS.txt -- Spectroscopic data of the 5 terminations (Figure 2). data_Fig2_positions.txt -- Positions of the points considered in the spectroscopic measurements (Figure 2). data_Fig3_rect.txt -- Ab initio Heisenberg coupling for the rectangular structure (Figure 3). data_Fig3_rhomb.txt -- Ab initio Heisenberg coupling for the rhombic structure (Figure 3). data_Fig4b_ribbonA1.txt -- Ribbon spectrum of the A1 termination (Figure 4). data_Fig4c_ribbonA2.txt -- Ribbon spectrum of the A2 termination (Figure 4). data_Fig4j_ribbonB1.txt -- Ribbon spectrum of the B1 termination (Figure 4). data_Fig4dupper_A3.txt -- Spectrum of the A3 termination (Figure 4). data_Fig4dlower_A3.txt -- Spectrum of the A3 termination with a larger size (Figure 4). <br> Extended data figure source data: data_ED1_a.txt -- Extended Data Figure 1a. data_ED1_b.txt -- Extended Data Figure 1b. data_ED2.txt -- Extended Data Figure 2. data_ED3.txt -- Extended Data Figure 3. data_ED5.txt -- Extended Data Figure 5. data_ED6_b.txt -- Extended Data Figure 6b. data_ED6_c.txt -- Extended Data Figure 6c. <br> Topographies of the five terminations considered in the paper: topography_A1.png -- Topographic image of the lattice termination A1 topography_A2.png -- Topographic image of the lattice termination A2 topography_A3.png -- Topographic image of the lattice termination A3 topography_B1.png -- Topographic image of the lattice termination B1 topography_B2.png -- Topographic image of the lattice termination B2
DOI: 10.25919/awkx-sr09
title: Parkes observations for project P1183 semester 2023APRS_13

description: A new energetic repeating FRB 20220529 can be observed by both FAST and Parkes telescopes and the simultaneous observing time is up to one hour. We have observed this source using Parkes UWL green time and in total 21 bursts have been detected. Two bursts of them have the corresponding simultaneous FAST observations. Only one burst has 4-pol datasets and is bright enough to analyse the polarization properties. Therefore, we propose to continue the monitoring of the source of FRB 20220529 using the Parkes UWL with high-time resolution and 4-pol observation. The new proposed observation aims to: (1)detect more bursts by Parkes UWL with full polarization information; (2) detect more bursts by Parkes UWL with corresponding simultaneous FAST observations; (3) study the radiation spectrum by more bursts detected in simultaneous observations of Parkes and FAST; (4) study the burst microstructure using high time resolution datasets, and (5) study the frequency ranges changes of the repeating bursts.
DOI: 10.25403/upresearchdata.23633940
title: The behaviour and egg production of laying hens

description: Data was collected at Leslie farm in Mpumalanga which falls under Rossgro Poultry Eggs. This farm has two types of housing systems: namely, floor system (FS) and conventional cages (CC). The enriched cages (EC), which consisted of modified CC were developed according to the requirements for the study. The data was obtained on the hens housed in these 3 housing systems through the utilisation of video recording and eye observations conducted by trained staff members. These observations were focused on the behaviours of hens, as well as various production parameters including body weight, egg production, and body condition scoring.
DOI: 10.25403/upresearchdata.23633940.v1
title: The behaviour and egg production of laying hens

description: Data was collected at Leslie farm in Mpumalanga which falls under Rossgro Poultry Eggs. This farm has two types of housing systems: namely, floor system (FS) and conventional cages (CC). The enriched cages (EC), which consisted of modified CC were developed according to the requirements for the study. The data was obtained on the hens housed in these 3 housing systems through the utilisation of video recording and eye observations conducted by trained staff members. These observations were focused on the behaviours of hens, as well as various production parameters including body weight, egg production, and body condition scoring.
DOI: 10.5281/zenodo.8130936
title: CARL-W: a Testbed for Empirical Analyses of 5G and Starlink Performance

description: The deployment of 5G networks, including 5G Non-Public Networks (5G-NPNs) for private use in several verticals, is rapidly taking place worldwide. However, deploying these networks in under-served areas, where there may be limited Internet access or backhauling capabilities, presents challenges. To address these challenges, there is a growing interest in using Low Earth Orbit (LEO) satellites, such as SpaceX's Starlink, which can provide high-throughput and low-latency Internet access via dense satellite constellations. In this paper, we present CARL-W, the Wireless module of the Communications Advanced Research Laboratory (CARL) at Karlstad University, which combines a 5G-NPN and a Starlink deployment. CARL-W serves as a platform for empirical analyses on both systems, thus contributing towards the study of their possible integration. In particular, we outline the CARL-W experimentation framework and provide access to the CARL-W visualization and data exporting platform. We also open-source a 1-month Starlink dataset, facilitating further analyses of this relatively new technology.
DOI: 10.5281/zenodo.8130935
title: CARL-W: a Testbed for Empirical Analyses of 5G and Starlink Performance

description: The deployment of 5G networks, including 5G Non-Public Networks (5G-NPNs) for private use in several verticals, is rapidly taking place worldwide. However, deploying these networks in under-served areas, where there may be limited Internet access or backhauling capabilities, presents challenges. To address these challenges, there is a growing interest in using Low Earth Orbit (LEO) satellites, such as SpaceX's Starlink, which can provide high-throughput and low-latency Internet access via dense satellite constellations. In this paper, we present CARL-W, the Wireless module of the Communications Advanced Research Laboratory (CARL) at Karlstad University, which combines a 5G-NPN and a Starlink deployment. CARL-W serves as a platform for empirical analyses on both systems, thus contributing towards the study of their possible integration. In particular, we outline the CARL-W experimentation framework and provide access to the CARL-W visualization and data exporting platform. We also open-source a 1-month Starlink dataset, facilitating further analyses of this relatively new technology.
DOI: 10.4121/20570778
title: Data belonging to the research on Application of weighted gene co-expression network analysis to explore the targets of treadmill training in rats with spinal cord injury

description: TFLS-2021-0692.R7 -QPCR raw data~230705;The raw data of RT-qPCR is about RT-qPCR of AKT1, JAK2, TNF, STAT1 and miR-135A between SCI 8d + TM and SCI 14d + TM vs SCI 8d and SCI 14d groups.
DOI: 10.4121/20570778.v1
title: Data belonging to the research on Application of weighted gene co-expression network analysis to explore the targets of treadmill training in rats with spinal cord injury

description: TFLS-2021-0692.R7 -QPCR raw data~230705;The raw data of RT-qPCR is about RT-qPCR of AKT1, JAK2, TNF, STAT1 and miR-135A between SCI 8d + TM and SCI 14d + TM vs SCI 8d and SCI 14d groups.
DOI: 10.6084/m9.figshare.23614263.v1
title: An exposome atlas of human serum reveals risk of chronic diseases

description: Although adverse environmental exposures are considered to be a major cause to chronic diseases, current studies have provided limited knowledge on real-world chemical exposures and related risks. Here, we collected serum samples from 5696 healthy people and patients, including 12 chronic diseases in China, and completed serum biomonitoring containing 267 chemicals using gas and liquid chromatography-tandem mass spectrometry. 74 high-frequently detected exposures were used for exposure characterization and risk analysis. Results showed that region was the most critical factor influencing human exposure levels, followed by age. Hyperlipidemia was associated with the maximum number of exposures. Organochlorine pesticides and perfluoroalkyl substances were associated with multiple chronic diseases, and some of them exceed the exposure reference values. Mixture effect models showed significant risk effects of exposure on hyperlipidemia, metabolic syndrome and hyperuricemia. Overall, this study provided a comprehensive human serum exposure atlas and its disease risk, which could guide subsequent more in-depth cause-and-effect studies between environmental exposures and human health.
DOI: 10.34740/kaggle/dsv/6109501
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.11583/dtu.12009060
title: Reducing the High Iodine Content of Saccharina latissima and Improving the Profile of Other Valuable Compounds by Water Blanching

description: This dataset was collected as part of the PhD project of Cecilie Wirenfeldt Nielsen<br><br>These files include all data used to publish "Reducing the high iodine content of <i>Saccharina latissima</i> and improving the profile of other valuable compounds by blanching."
DOI: 10.11583/dtu.12009060.v1
title: Reducing the High Iodine Content of Saccharina latissima and Improving the Profile of Other Valuable Compounds by Water Blanching

description: This dataset was collected as part of the PhD project of Cecilie Wirenfeldt Nielsen<br><br>These files include all data used to publish "Reducing the high iodine content of <i>Saccharina latissima</i> and improving the profile of other valuable compounds by blanching."
DOI: 10.17028/rd.lboro.23653200
title: Supplementary information files for Hydrogen technology adoption analysis in Africa using a Doughnut-PESTLE hydrogen model (DPHM)

description: Hydrogen technology adoption analysis in Africa using a Doughnut-PESTLE hydrogen model (DPHM) The hydrogen economy requires the right conditions to produce hydrogen by sustainable routes and provide it to local and international markets for suitable applications. This study evaluated the political, economic, social, technological, legal, and environmental (PESTLE) conditions that can be instrumental in adopting hydrogen technologies most effectively by encapsulating aspects relevant to key stakeholders from hydrogen technology developers through to end-users. For instance, the analysis has shown that countries within a government effectiveness index of 0.5 and −0.5 are leading the planning of hydrogen economies through strategic cooperation with hydrogen technology developers. Furthermore, the combination of a Doughnut and PESTLE analysis created a novel approach to assessing the adoption of hydrogen technologies while evaluating the impact of the hydrogen economy. For instance, the estimated ammonia demand in 2050 and subsequent anthropogenic nitrogen extraction rate will be about two and a half times more than the 2009 extraction rate.
DOI: 10.17028/rd.lboro.23653200.v1
title: Supplementary information files for Hydrogen technology adoption analysis in Africa using a Doughnut-PESTLE hydrogen model (DPHM)

description: Hydrogen technology adoption analysis in Africa using a Doughnut-PESTLE hydrogen model (DPHM) The hydrogen economy requires the right conditions to produce hydrogen by sustainable routes and provide it to local and international markets for suitable applications. This study evaluated the political, economic, social, technological, legal, and environmental (PESTLE) conditions that can be instrumental in adopting hydrogen technologies most effectively by encapsulating aspects relevant to key stakeholders from hydrogen technology developers through to end-users. For instance, the analysis has shown that countries within a government effectiveness index of 0.5 and −0.5 are leading the planning of hydrogen economies through strategic cooperation with hydrogen technology developers. Furthermore, the combination of a Doughnut and PESTLE analysis created a novel approach to assessing the adoption of hydrogen technologies while evaluating the impact of the hydrogen economy. For instance, the estimated ammonia demand in 2050 and subsequent anthropogenic nitrogen extraction rate will be about two and a half times more than the 2009 extraction rate.
DOI: 10.25403/upresearchdata.23634603
title: Stable isotope analysis of Southern Ocean myctophids using faecal otoliths

description: The tables and figures in this dataset represent the development of a method to estimate the stable isotope values of myctophids when only otoliths from faecal samples of predators (or sedimentary samples) are available. Otoliths from wild myctophids were collected from faecal samples of fur seals at Marion Island in the Southern Ocean, and were cleaned using NaOCl (bleach) before obtaining the stable isotope values of the otoliths' organic component. The cleaning step required correction which was done by establishing a correction curve based on the amount of otolith material to be cleaned.The next step involved establishing an offset value between otoliths and muscle that could be applied to otolith stable isotope values to estimate muscle values in the absence of fresh fish samples (only faecal or sedimentary otoltihs available). The offsets were calculated by measuring paired otolith and muscle values of Antarctic fish, while ensuring control for lipid content in muscle. With the offsets applied to the cleaned and corrected Marion Island samples, the utility of the method is demontrated by comparisons with published counterparts, and used in the stable isotope dietary mixing models of Marion Island predators including various southern elephant seal classes and killer whales. Analyses were done using R software. Juvenile southern elepehant seal diet modelling was improved, first models for sub-adult, adult female and adult male seals are now available, and killer whale modelling remains unresolved.