cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/examiner-m24376
title: Safety leaders picnic at Palms Vista playground, 1960

description: 1 image. Safety leaders picnic at Palms Vista playground, 17 August 1960. Ilene (cq) Kay -- 10 1.2 years; Marshall Kurtz -- 9 1/2 years. ; Caption slip reads: "Photographer: Paegel. Date: 1960-08-17. Reporter: Waymire. Assignment: Safety leaders picnic. Ilene (cq) Kay, 10 1/2, and Marshall Kurtz, 9 1/2, both of Palms Mar Vista playground, live it up at picnic."
DOI: 10.25549/examiner-m24422
title: Royal Danish Ballet, 1960

description: 1 image. Royal Danish Ballet, 17 August 1960. Henning Kronstam (leading dancer with a bunch of girls). (Handout). Supplementary material reads: Royal Danish Ballet leading male dancer Henning Kronstam is pleasantly surrounded by bevy of female members of company."
DOI: 10.25549/examiner-m24323
title: In hospital with broken shoulder, 1960

description: 1 image. In hospital with broken shoulder, 17 August 1960. Joe E. Brown (in hospital with broken shoulder; Viola Antonsen (nurse). ; Caption slip reads: "Photographer: Tompkins. Date&gt; 1960-08-17. Reporter: Tompkins. Assignment: Joe E. Brown in SM hospital with broken shoulder. 71-72: Joe E. Brown expresses delight as he is presented with flowers and a replica of a 'showboat' sent to him by his family. With him is nurse Viola Antonsen. He is in Santa Monica hospital recuperating from broken shoulder suffered opening night of play, showboat. He will be in hosp. several days."
DOI: 10.25549/examiner-m24331
title: Fire, 1960

description: 1 image. Fire, 17 August 1960. Fire in fruit warehouse at 931 South San Pedro Street. ; Caption slip reads: "Photographer: Gray. Date: 1960-08-27. Reporter: Henley. Assignment: Fire. Fire in fruit warehouse at 931 S. San Pedro St."
DOI: 10.25549/examiner-m24327
title: Million mile driver for Richfield Oil corporation, 1960

description: 1 image. Million mile driver for Richfield Oil corporation, 17 August 1960. Don H. Martin (drove 13 years without accident); J.T. Foster (official); A.E. Patton (official) (Handout for financial). ; Supplementary material reads: "From: Jim Rowe. Richfield Oil Corp. Madison 9-4111, Home: HO. 7-2497. Art with Million Mile Driver Martin. Don't change your luck suggest Richfield Oil Corporation officials to Don M. Martin, transport driver. Martin drove for 13 years and 1,000,000 miles without an accident. Company officials J.T. Foster (L), and A.E. Patton, (R), presented engaved [sic] gold watch and gold buckle attesting the exceptional safety record. Oh yes, they brought pet Pete Roleum to Mascot Martin -- four rabbits feet instead of one."
DOI: 10.25549/examiner-m24394
title: Satellite "Echo", 1960

description: 1 image. Satellite "Echo", 17 August 1960. Negs. shot by Monte.
DOI: 10.25549/examiner-m24342
title: Royal Danish Ballet group eating Danish pastry, 1960

description: 1 image. Royal Danish Ballet group eating Danish pastry, 17 August 1960. Rosalind Wyman; Niels Bjorn Larsen; Jens Louis Petersen; Mette Mollerup; Ruth Anderson; Kirsten Ralov; Inge Sand. (Handout). ; Supplementary material reads: "News from Brigham Townsend, Public Relations Director, Hull Hotels, Hollywood Roosevelt Hotel... 7000 Hollywood Boulevard, Hollywood 28, California. Caption for picture #213: Danish pastry makes the dancers of the famous Royal Danish Ballet feel right at home as they relax at the Hollywood Roosevelt Hotel before making their appearance in the opening of their 15-performance engagement in the Greek Theater at 8:30 Thursday night. Welcoming the stirring company of 130 is Councilwoman Rosalind Wyman, center, flanked by Niels Bjorn Larsen, left, celebrated character dancer and ballet master  of the company, and Jens Louis Petersen, general manager of the American tour while an attractive quartet from the 16 solo dancers, Mette Mollerup, Ruth Andersen, Kirsten Ralov, and Inge Sand, left to right, look on."
DOI: 10.6084/m9.figshare.14544835.v1
title: Additional file 3 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 3: Table S2 GO terms with all up/downregulated DEGs enrichment analysis. GO terms with all upregulated DEGs (GO terms with all up-DEGs), GO enrichment analysis with all upregulated DEGs (enriched GO-up), GO terms with all downregulated DEGs (GO terms with all down-DEGs) and GO enrichment analysis with all downregulated DEGs (enriched GO-down). NL: normal liver, FL: fatty liver.
DOI: 10.6084/m9.figshare.14544844
title: Additional file 6 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 6: Table S4 Input and output files in LPIA. Biological pathways (FL_NL_P), biological functions (FL_NL_G) and gene transcriptional response in different conditions (FL_NL_DE) are used in LPIA and the output file (Output_LPIA_FL_NL). NL: normal liver, FL: fatty liver.
DOI: 10.6084/m9.figshare.14544838
title: Additional file 4 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 4: Table S3 KEGG pathway enrichment analysis. Pathway ID, Pathway Name, KEGG function classification, number of Candidate and total DEGs/genes, Rich Ratio, P-value, Q-value are shown. NL: normal liver, FL: fatty liver.
DOI: 10.6084/m9.figshare.14544835
title: Additional file 3 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 3: Table S2 GO terms with all up/downregulated DEGs enrichment analysis. GO terms with all upregulated DEGs (GO terms with all up-DEGs), GO enrichment analysis with all upregulated DEGs (enriched GO-up), GO terms with all downregulated DEGs (GO terms with all down-DEGs) and GO enrichment analysis with all downregulated DEGs (enriched GO-down). NL: normal liver, FL: fatty liver.
DOI: 10.6084/m9.figshare.14544832
title: Additional file 2 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 2: Table S1 DEGs (FDR ≤ 0.001) in normal liver and fatty liver. Lists of DEGs include Gene ID, Length, FPKM, Log2 fold change, Q-value, P- value, and Annotation.
DOI: 10.6084/m9.figshare.14544826
title: Additional file 11 of Comparative transcriptomic analysis reveals an association of gibel carp fatty liver with ferroptosis pathway

description: Additional file 11: Table S8 Primers used in this study.
DOI: 10.6084/m9.figshare.18739314.v1
title: Additional file 8 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 8: Table S7. phenoype analysis of the cheRNA T-DNA insertion mutants.
DOI: 10.17630/22df35b8-fe00-41c8-ab82-693fa6178ab5
title: On the origin of the anomalous peak in the resistivity of TiSe2 (dataset)

description: Dataset, containing numerical results of simulations presented in the paper.
DOI: 10.6084/m9.figshare.21359822.v1
title: Additional file 2 of CapG promoted nasopharyngeal carcinoma cell motility involving Rho motility pathway independent of ROCK

description: Additional file 2: Table 1. A gene list with Spearman’s correlation coefficients correlated with CapG expression level.
DOI: 10.5281/zenodo.10452183
title: NCBI Refseq database as of May 2023 part 1

description: This is the first part of the NCBI Refseq bacterial database originally downloaded in May of 2023. This was used to create the Bacterial 16S and Gyrb databases used in gyrB primer development. The second part can be found at 10.5281/zenodo.10452279.

To recombine the database parts use the code 

"cat Bacteria.refseq.tar.gz.part* > Bacteria.refseq.tar.gz" 

the total file size of the downloaded refseq database is 88 GB

The gyrB and 16S databases can be found at 10.5281/zenodo.10451935
DOI: 10.5281/zenodo.10452184
title: NCBI Refseq database as of May 2023 part 1

description: This is the first part of the NCBI Refseq bacterial database originally downloaded in May of 2023. This was used to create the Bacterial 16S and Gyrb databases used in gyrB primer development. The second part can be found at 10.5281/zenodo.10452279.

To recombine the database parts use the code 

"cat Bacteria.refseq.tar.gz.part* > Bacteria.refseq.tar.gz" 

the total file size of the downloaded refseq database is 88 GB

The gyrB and 16S databases can be found at 10.5281/zenodo.10451935
DOI: 10.5281/zenodo.10611194
title: The Impact of Patterns in Linkage Disequilibrium and Sequencing Quality on the Imprint of Balancing Selection

description: Regions under balancing selection are characterized by dense polymorphisms and multiple persistent haplotypes, along with other sequence complexities. Successful identification of these patterns depends on both the statistical approach and the quality of sequencing. To address this challenge, at first, a new statistical method called LD-ABF was developed, employing efficient Bayesian techniques to effectively test for balancing selection. LD-ABF demonstrated the most robust detection of selection in a variety of simulation scenarios, compared against a range of existing tests/tools (Tajima’s D, HKA, Dng, BetaScan, and BalLerMix). Furthermore, the impact of the quality of sequencing on detection of balancing selection was explored, as well, using: 1) SNP genotyping and exome data, 2) targeted high-resolution HLA genotyping (IHIW), and 3) whole-genome long-read sequencing data (Pangenome). In the analysis of SNP genotyping and exome data, we identified known targets and 38 new selection signatures in genes not previously linked to balancing selection. To further investigate the impact of sequencing quality on detection of balancing selection, a detailed investigation of the MHC was performed with high-resolution HLA typing data. Higher quality sequencing revealed the HLA-DQ genes consistently demonstrated strong selection signatures otherwise not observed from the sparser SNP array and exome data. The HLA-DQ selection signature was also replicated in the Pangenome samples using considerably less samples but, with high quality long-read sequence data. The improved statistical method, coupled with higher quality sequencing, leads to more consistent identification of selection and enhanced localization of variants under selection, particularly in complex regions.
DOI: 10.5281/zenodo.10611193
title: The Impact of Patterns in Linkage Disequilibrium and Sequencing Quality on the Imprint of Balancing Selection

description: Regions under balancing selection are characterized by dense polymorphisms and multiple persistent haplotypes, along with other sequence complexities. Successful identification of these patterns depends on both the statistical approach and the quality of sequencing. To address this challenge, at first, a new statistical method called LD-ABF was developed, employing efficient Bayesian techniques to effectively test for balancing selection. LD-ABF demonstrated the most robust detection of selection in a variety of simulation scenarios, compared against a range of existing tests/tools (Tajima’s D, HKA, Dng, BetaScan, and BalLerMix). Furthermore, the impact of the quality of sequencing on detection of balancing selection was explored, as well, using: 1) SNP genotyping and exome data, 2) targeted high-resolution HLA genotyping (IHIW), and 3) whole-genome long-read sequencing data (Pangenome). In the analysis of SNP genotyping and exome data, we identified known targets and 38 new selection signatures in genes not previously linked to balancing selection. To further investigate the impact of sequencing quality on detection of balancing selection, a detailed investigation of the MHC was performed with high-resolution HLA typing data. Higher quality sequencing revealed the HLA-DQ genes consistently demonstrated strong selection signatures otherwise not observed from the sparser SNP array and exome data. The HLA-DQ selection signature was also replicated in the Pangenome samples using considerably less samples but, with high quality long-read sequence data. The improved statistical method, coupled with higher quality sequencing, leads to more consistent identification of selection and enhanced localization of variants under selection, particularly in complex regions.
DOI: 10.5281/zenodo.10612007
title: The Impact of Patterns in Linkage Disequilibrium and Sequencing Quality on the Imprint of Balancing Selection

description: Regions under balancing selection are characterized by dense polymorphisms and multiple persistent haplotypes, along with other sequence complexities. Successful identification of these patterns depends on both the statistical approach and the quality of sequencing. To address this challenge, at first, a new statistical method called LD-ABF was developed, employing efficient Bayesian techniques to effectively test for balancing selection. LD-ABF demonstrated the most robust detection of selection in a variety of simulation scenarios, compared against a range of existing tests/tools (Tajima’s D, HKA, Dng, BetaScan, and BalLerMix). Furthermore, the impact of the quality of sequencing on detection of balancing selection was explored, as well, using: 1) SNP genotyping and exome data, 2) targeted high-resolution HLA genotyping (IHIW), and 3) whole-genome long-read sequencing data (Pangenome). In the analysis of SNP genotyping and exome data, we identified known targets and 38 new selection signatures in genes not previously linked to balancing selection. To further investigate the impact of sequencing quality on detection of balancing selection, a detailed investigation of the MHC was performed with high-resolution HLA typing data. Higher quality sequencing revealed the HLA-DQ genes consistently demonstrated strong selection signatures otherwise not observed from the sparser SNP array and exome data. The HLA-DQ selection signature was also replicated in the Pangenome samples using considerably less samples but, with high quality long-read sequence data. The improved statistical method, coupled with higher quality sequencing, leads to more consistent identification of selection and enhanced localization of variants under selection, particularly in complex regions.
DOI: 10.5281/zenodo.10612073
title: The Impact of Patterns in Linkage Disequilibrium and Sequencing Quality on the Imprint of Balancing Selection

description: Regions under balancing selection are characterized by dense polymorphisms and multiple persistent haplotypes, along with other sequence complexities. Successful identification of these patterns depends on both the statistical approach and the quality of sequencing. To address this challenge, at first, a new statistical method called LD-ABF was developed, employing efficient Bayesian techniques to effectively test for balancing selection. LD-ABF demonstrated the most robust detection of selection in a variety of simulation scenarios, compared against a range of existing tests/tools (Tajima’s D, HKA, Dng, BetaScan, and BalLerMix). Furthermore, the impact of the quality of sequencing on detection of balancing selection was explored, as well, using: 1) SNP genotyping and exome data, 2) targeted high-resolution HLA genotyping (IHIW), and 3) whole-genome long-read sequencing data (Pangenome). In the analysis of SNP genotyping and exome data, we identified known targets and 38 new selection signatures in genes not previously linked to balancing selection. To further investigate the impact of sequencing quality on detection of balancing selection, a detailed investigation of the MHC was performed with high-resolution HLA typing data. Higher quality sequencing revealed the HLA-DQ genes consistently demonstrated strong selection signatures otherwise not observed from the sparser SNP array and exome data. The HLA-DQ selection signature was also replicated in the Pangenome samples using considerably less samples but, with high quality long-read sequence data. The improved statistical method, coupled with higher quality sequencing, leads to more consistent identification of selection and enhanced localization of variants under selection, particularly in complex regions.
DOI: 10.6084/m9.figshare.18739293
title: Additional file 3 of Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

description: Additional file 3: Table S2. Information of cheRNAs.
DOI: 10.6084/m9.figshare.14544714
title: Additional file 10 of MYOD1 inhibits avian adipocyte differentiation via miRNA-206/KLF4 axis

description: Additional file 10: Table S9. Predicted binding miRNAs on 3′-UTR of c-Met gene.
DOI: 10.6084/m9.figshare.12972232
title: Additional file 3 of Five gene signatures were identified in the prediction of overall survival in resectable pancreatic cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.16640872
title: Additional file 1 of Expression, biochemical and structural characterization of high-specific-activity β-amylase from Bacillus aryabhattai GEL-09 for application in starch hydrolysis

description: Additional file 1. Molecular docking related data.
DOI: 10.17630/e721e294-105c-4a0c-9347-be4e99324249
title: Data underpinning: Structure‐based design, synthesis and biological evaluation of bis‐tetrahydropyran furan acetogenin mimics targeting the trypanosomatid F1 component of ATP synthase

description: Data for compounds reported in Structure‐based design, synthesis and biological evaluation of bis‐tetrahydropyran furan acetogenin mimics targeting the trypanosomatid F1 component of ATP synthase.
DOI: 10.6084/m9.figshare.14544717.v1
title: Additional file 1 of MYOD1 inhibits avian adipocyte differentiation via miRNA-206/KLF4 axis

description: Additional file 1: Table S1. Primer sequences used for the PCR and qPCR analysis.
DOI: 10.6084/m9.figshare.18739294.v1
title: Additional file 2 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 2: Table S1. The basic information of FaUBC genes in the genome of cultivated strawberry.
DOI: 10.15468/dl.nj6fpv
title: Occurrence Download

description: A dataset containing 8226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Czechia",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 8226 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-150216165555722/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmfpkt
title: Occurrence Download

description: A dataset containing 83062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "TaxonKey is Anura",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 83062 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022557-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4yvlz
title: Occurrence Download

description: A dataset containing 2609 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heritiera Aiton"
 ]
}

 The dataset includes 2609 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjne8s
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lasiocephalus puracensis (Cuatrec.) Cuatrec."
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059345-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jh9tmn
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pabstiella lacerticeps Luer & Toscano"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182378-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ea24pa
title: Occurrence Download

description: A dataset containing 665 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesua ferrea L."
 ]
}

 The dataset includes 665 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136052-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgxgpt
title: Occurrence Download

description: A dataset containing 26300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acorus calamus L."
 ]
}

 The dataset includes 26300 records from 266 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-150306150734599/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztd73d
title: Occurrence Download

description: A dataset containing 21155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelobates cultripes (Cuvier, 1829)"
 ]
}

 The dataset includes 21155 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000963-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdj68d
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nautilocalyx mulfordii Wiehler"
 ]
}

 The dataset includes 17 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182379-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jye3j
title: Occurrence Download

description: A dataset containing 4118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophophorus impejanus (Latham, 1790)"
 ]
}

 The dataset includes 4118 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136079-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.inrcvt
title: Occurrence Download

description: A dataset containing 5126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terrapene ornata (Agassiz, 1857)"
 ]
}

 The dataset includes 5126 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000182-150311145101897/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8140683
title: BBC News
DOI: 10.15468/dl.8skk98
title: Occurrence Download

description: A dataset containing 50257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax perezi (López-Seoane, 1885)"
 ]
}

 The dataset includes 50257 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000966-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.