cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14293638
title: Multi modal optical coherence tomography flowmetry of organ on chip devices

description: This repository contains raw data and analysis routines of the publication “Multi modal optical coherence tomography flowmetry of organ on chip devices” in Scientific Reports (doi.org/10.1038/s41598-025-10089-9). The reader is free to use the scripts and data in this depository if the manuscript is correctly cited in their work. For further questions, feel free to contact the corresponding author. Python 3.11 was used for programming. Please note that processing OCT intensity data with different apodization windows to match axial and transverse resolutions can be time-consuming. Despite using parallelized processing routines for the measurement data, the full analysis may still take several hours. If the parallelization fails, please restart the kernel and run the code again. Additionally, be aware of the significant RAM usage.

We have conducted number-fluctuation DLS-OCT 2D flow measurements in dilute particle suspensions using the Thorlabs OCT system. Analyzing the measurements necessitates a chirp interpolation and beam shape calibration files. All filenames, whether for raw data or analysis files, are sufficiently descriptive. To analyze the flow measurements, it is essential to have information regarding the measurement time series length (number of A-scans), the number of repeats (B-scans), and the acquisition rate. The results are plotted at the end of our analysis routines, with the parameters displayed as a function of channel length and depth. Raw measurement files and analysis routines are described below.








Name



Description



Parameters





N_a=200, N_b=2000, FOV=3.1, Q=40, along channel.oct



The interference intensity from the Thorlabs OCT for the 2D flow measurement along the channel length.



Na=200, Nb=2000, 5.5 kHz





N_a=200, N_b=2000, FOV=3.1, Q=40, cross-section, center



The interference intensity from the Thorlabs OCT for the 2D flow measurement along the cross-section at the center width of the channel.



Na=200, Nb=2000, 5.5 kHz





N_a=200, N_b=2000, FOV=3.1, Q=40, cross-section, outlet.oct



The interference intensity from the Thorlabs OCT for the 2D flow measurement along the cross-section at the channel outlet.



Na=200, Nb=2000, 5.5 kHz





N_a=200, N_b=2000, FOV=3.1, Q=41, cross-section, inlet.oct



The interference intensity from the Thorlabs OCT for the 2D flow measurement along the cross-section at the channel inlet.



Na=200, Nb=2000, 5.5 kHz





Beam shape.npy



A file containing the calibrated Gaussian beam shape (waist) as a function of axial position (optical depth).



 





Chirp.data



A file containing k-interpolation data for the Thorlabs OCT measurements.



 





ReadOCTFile.py



Written by Jos de Wit, this module reads and imports spectra from raw Thorlabs OCT files.



 





Processing.py



This module contains all analysis functions.



 





2D flow analysis.py



The script is for analyzing raw concentrated 2D flow measurement files from the Thorlabs OCT setup.
DOI: 10.15468/dl.sw24he
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichomyrmex destructor",
 "Country is Cabo Verde",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011084-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwaybk
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACC0430"
 ]
}

 The dataset includes 17 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011087-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.as6hqe
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Atriplex hortensis",
 "Country is Moldova, Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011088-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wk5v3g
title: Occurrence Download

description: A dataset containing 551958 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Senecio vulgaris"
 ]
}

 The dataset includes 551958 records from 2963 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010975-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.253819
title: Core/Section summary of ODP Hole 116-717A
DOI: 10.1594/pangaea.798055
title: Depth-age model of ODP Hole 166-1005A
DOI: 10.25549/gar-c81-41203
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.264099
title: Paleomagnetic measurements on ODP Hole 160-968C
DOI: 10.1594/pangaea.270662
title: Paleontological investigation on planktonic foraminifers of ODP Hole 169-1038C
DOI: 10.1594/pangaea.261797
title: Paleomagnetic measurements on ODP Hole 126-792B
DOI: 10.1594/pangaea.794444
title: P-wave velocity (PWS split-core system) on ODP Hole 207-1261B
DOI: 10.25549/gar-c81-41190
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.793733
title: P-wave velocity (PWS split-core system) on ODP Hole 127-794C
DOI: 10.1594/pangaea.795703
title: Sample corelog of ODP Hole 175-1077B
DOI: 10.1594/pangaea.259971
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 160-967F
DOI: 10.1594/pangaea.790700
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 189-1172A
DOI: 10.25549/gar-c81-33757
title: Edith Wharton, letter, 1919-07-04, to Hamlin Garland

description: Edith Wharton, 53 Rue de Varenne, Paris, France, letter, 1919 July 4, to Hamlin Garland. "I appreciate very much what you have written me about 'with the tide'." -- first line.
DOI: 10.1594/pangaea.252753
title: Downhole temperature in ODP Hole 111-677B
DOI: 10.1594/pangaea.260625
title: Natural gamma radiation of ODP Hole 152-917A
DOI: 10.1594/pangaea.254087
title: Core/Section summary of ODP Hole 134-831A
DOI: 10.1594/pangaea.254738
title: Core/Section summary of ODP Hole 172-1057B
DOI: 10.1594/pangaea.254736
title: Core/Section summary of ODP Hole 172-1056D
DOI: 10.1594/pangaea.790579
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 152-918D
DOI: 10.25549/gar-c81-41319
title: Garland: Correspondence

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.255568
title: Geochemistry of interstitial water of ODP Hole 112-679C
DOI: 10.1594/pangaea.259599
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 117-731B
DOI: 10.1594/pangaea.259600
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 119-736A
DOI: 10.1594/pangaea.792675
title: Thermal conductivity of ODP Hole 138-853B
DOI: 10.25549/gar-c81-41197
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.261683
title: Paleomagnetic measurements on ODP Hole 117-723A
DOI: 10.1594/pangaea.264344
title: Paleomagnetic measurements on ODP Hole 183-1136A
DOI: 10.1594/pangaea.260704
title: Natural gamma radiation of ODP Hole 159-959C
DOI: 10.1594/pangaea.265843
title: Magnetic susceptibility on ODP Hole 155-945A
DOI: 10.1594/pangaea.790699
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 189-1171D
DOI: 10.1594/pangaea.798339
title: Protocol files of X-ray diffraction analysis from ODP Hole 135-839A

description: X-ray diffraction protocol files stored as pdf in a zip archive.
DOI: 10.25549/garland-ouc11819736
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.271405
title: X-ray fluorescence on samples of ODP Hole 155-940A
DOI: 10.1594/pangaea.797416
title: Close-up images of ODP Hole 209-1272A

description: See further details for a thumbnail overview catalog.
DOI: 10.1594/pangaea.261692
title: Paleomagnetic measurements on ODP Hole 119-738C
DOI: 10.1594/pangaea.789484
title: Paleomagnetic measurements on ODP Hole 162-986A
DOI: 10.25549/gar-c81-41154
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.254347
title: Core/Section summary of ODP Hole 154-925A
DOI: 10.1594/pangaea.265543
title: Magnetic susceptibility on ODP Hole 133-818A
DOI: 10.1594/pangaea.256373
title: Geochemistry of interstitial water of ODP Hole 204-1248B
DOI: 10.1594/pangaea.799175
title: Section images from ODP Hole 155-944A
DOI: 10.25549/gar-c81-41216
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.789485
title: Paleomagnetic measurements on ODP Hole 162-986B
DOI: 10.1594/pangaea.796800
title: Close-up images of ODP Hole 155-930D

description: See further details for a thumbnail overview catalog.
DOI: 10.1594/pangaea.270288
title: Paleontological investigation on nannofossils of ODP Hole 144-877A
DOI: 10.1594/pangaea.801294
title: Visual core description (VCD) from ODP Hole 172-1056B

description: Sediment depth is given in mbsf. Use "further details" link to download a zip archive of all visual core descriptions.
DOI: 10.1594/pangaea.790580
title: Gamma-ray attenuation measurements of bulk density using whole-core multi-sensing track on ODP Hole 154-925A
DOI: 10.1594/pangaea.792367
title: Thermal conductivity of ODP Hole 183-1139A
DOI: 10.25549/gar-c81-41249
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.790957
title: Raw data files of X-ray diffraction analysis from ODP Hole 167-1016A

description: X-ray diffraction data stored as flat files in a zip archive.
DOI: 10.1594/pangaea.799217
title: Section images from ODP Hole 159-959C
DOI: 10.1594/pangaea.264217
title: Paleomagnetic measurements on ODP Hole 169-1036C
DOI: 10.1594/pangaea.800889
title: Visual core description (VCD) from ODP Hole 141-860A

description: Sediment depth is given in mbsf. Use "further details" link to download a zip archive of all visual core descriptions.
DOI: 10.25549/gar-c81-41276
title: gar-200-42-04-01

description: Pulitzer Prize winner Hamlin Garland (1860-1940) is best remembered by the title he gave his autobiography, Son of the Middle Border. First receiving notice with a successful collection of grimly naturalistic 'down home' stories in 1891 (Main-Roads Traveled), Garland came to prominence just as the "frontier" mentality was receding in the wake of the settling of California and the West. Garland, with roots in Wisconsin and the Upper Midwest, frequently wrote about how this area had also been borderland in his lifetime. Garland was elected to the American Academy of Arts and Letters in 1918, and won the 1922 Pulitzer Prize for biography for his autobiography A Daughter of the Middle Border. In later years Garland wrote extensively about Indian affairs, conservation, art, literary trends, and psychic research; he also expanded his geographic range to include romances of the Far West, yet it was his reminiscences of his early years which stamped him in the public mind, and to which he turned again and again for inspiration. He lectured at USC in the mid-1930s; and his personal library along with some 8000 letters from fellow writers, publishers, and admirers came to USC after Garland's death, forming the cornerstone of the American Literature Collection. Supporters Thanks to generous support from the National Historical Publications & Records Commission (https://www.archives.gov/nhprc), the USC Libraries are digitizing this collection for online public access.
DOI: 10.1594/pangaea.797630
title: Raw data files of X-ray diffraction analysis from ODP Hole 182-1130C

description: X-ray diffraction data stored as flat files in a zip archive.
DOI: 10.1594/pangaea.255845
title: Geochemistry of interstitial water of ODP Hole 138-852C
DOI: 10.1594/pangaea.257670
title: Smear slide investigation on ODP Hole 204-1244E