cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4b815
title: Data from: Propagule pressure in the presence of uncertainty: extending the utility of proxy variables with hierarchical models

description: 1. Species invasions depend on the abundance and rate at which organisms
 are introduced to new localities, known as propagule pressure. Due to the
 challenges of measuring propagule pressure, proxy variables are often
 used; however, untested proxy variables may obscure the role of propagule
 pressure vs. ecological factors that facilitate invasion, leading to
 uncertainty about the invasion process and confounding management
 response. 2. To generate absolute estimates of propagule pressure and
 facilitate meaningful comparison among pathways of species introduction,
 we extend proxy variables by combining ecological and global trade data
 with hierarchical statistical models. We derive absolute propagule
 pressure with probability distribution functions (propagule size: the
 probability of introducing n propagules per event; and overall propagule
 pressure: the probability of introducing n propagules per year) and, based
 on these projections, evaluate the performance of ballast water volume
 (m3) as a common proxy variable. 3. Hindcast accuracy of ballast water
 volume was low but strongly scale-dependent, exhibiting poor accuracy (R2
 = 0·058) at small scales and only marginal accuracy at large scales
 (overall R2 = 0·169). As a result, conclusions about propagule pressure
 are likely to be biased based on the ballast volume proxy, as may be
 conclusions about species invasion when ballast water volume has been
 used. Irrespective of geographic pathway, estimated propagule sizes
 demonstrated extreme leptokurtosis and long right tails, with maximum
 values between 131-fold and 2966-fold greater than median values. These
 characteristics signify a subset of introduction events involving extreme
 propagule abundance that may provide opportunity to overcome Allee
 thresholds or marginal environmental conditions. 4. Developing meaningful
 propagule supply functions is critical to resolve the role of propagule
 pressure within the invasion process and test hypotheses about species
 colonization at landscape scales. By joining absolute propagule pressure
 with existing theory about species extinction, the expected ecological
 outcome of environmental policy to manage propagule pressure can be
 estimated within a statistical framework.
description: Pacific
 ZooplanktonSamples of zooplankton
 from the ballast water of ships arriving to Pacific
 CanadaPACDENS.txtAtlantic ZooplanktonSamples of zooplankton from the ballast water of ships arriving to Atlantic CanadaATLDENS.txtGreat Lakes ZooplanktonSamples of zooplankton from the ballast water of ships arriving to the Laurentian Great LakesGLDENS.txtShip-trip dataShip-trips between source and recipient regions, including corresponding ballast water volumertrips.txt
DOI: 10.5061/dryad.8665
title: Data from: Climatic predictors of temperature performance curve parameters in ectotherms imply complex responses to climate change

description: Determining organismal responses to climate change is one of
 biology's greatest challenges. Recent forecasts for future climates
 emphasize altered temperature variation and precipitation, but most
 studies of animals have largely focussed on forecasting the outcome of
 changes in mean temperature. Theory suggests that extreme thermal
 variation and precipitation will influence species performance, and hence
 affect their response to changes in climate. Using an
 information-theoretic approach, we show that in squamate ectotherms
 (mostly lizards and snakes), two fitness-influencing components of
 performance, the critical thermal maximum and the thermal optimum, are
 more closely related to temperature variation and to precipitation,
 respectively, than either is to mean thermal conditions. By contrast,
 critical thermal minimum is related to mean annual temperature. Our
 results suggest that temperature variation and precipitation regimes have
 had a strong influence on the evolution of ectotherm performance, so that
 forecasts for animal responses to climate change will have to incorporate
 these factors, and not only changes in average temperature.
description: Squamate phylogeny
 incorporated in PGLS analysesPhylogenetic
 relationships used to obtain the supertree were compiled from the
 literature.Supertree_squamates.pdfGlobal map with species geographic locationsLatitudinal and longitudinal co-ordinates of the populations sampled for CTmax, CTmin and Tp were determined from the geographic locations given in each respective study. When locations were not given (26% of the data) or multiple populations were used (&lt;1% of the data), the centre of the species range was determined using species distribution maps and occurrence data from museum specimen records .Species locations.pdfRelationships between parameters of the performance curveAfter accounting for phylogenetic relationships across species, the critical thermal minimum was not related to (a) the critical thermal maximum (CTmax) (PGLS, n = 111, P &gt; 0.05) or to (b) the preferred body temperature (Tp) (PGLS, n = 97, P &gt; 0.05). By contrast, (c) CTmax and Tp were strongly related (PGLS, n = 133, P &lt; 0.05).Regressions_CTmax_CTmin_Tp.pdfSpecies, performance curve parameters and literature sourcesSquamate thermal data compiled from the literature. Tp is the preferred body temperature, CTmax is the critical thermal maximum and CTmin is the critical thermal minimum.Species performance data.pdfCorrelation matrices_climate predictorsCorrelation matrices for all climate predictors used in models predicting Tp, CTmax and CTminCorr_matrices.pdf
DOI: 10.5061/dryad.jn4qq
title: Data from: Predicting the evolutionary dynamics of seasonal adaptation to novel climates in Arabidopsis thaliana

description: Anticipating the effect of climate change on plants requires understanding
 its evolutionary consequence on traits and genes in complex realistic
 environments. How seasonal variation has an impact on the dynamics of
 adaptation in natural populations remains unclear. We simulated adaptation
 to different climate change scenarios, grounding our analysis in
 experimental data and explicitly exploring seasonal variation. Seasonal
 variation dramatically affected the dynamics of adaptation: Marked
 seasonality led to genetic differentiation within the population to
 different seasonal periods, whereas low seasonality led to a single
 population with fast-evolving fitness. Our results suggest the prevalence
 of phenotypic plasticity across environmental conditions in determining
 how climate change will shift selection on traits and loci. In this
 unpredictable context, maintaining broad genomic diversity is critical.
description: Fournier-Leveletal2016_Data_ArchiveData and Analysis scripts in the R programming language supporting the article by Fournier-Level et al (2016) PNAS.
DOI: 10.5061/dryad.83mr1
title: Data from: Leaf litter diversity and structure of microbial decomposer communities modulate litter decomposition in aquatic systems

description: 1. Leaf litter decomposition is a major ecosystem process that can link
 aquatic to terrestrial ecosystems by flows of nutrients. Biodiversity and
 ecosystem functioning research hypothesizes that the global loss of
 species leads to impaired decomposition rates and thus to slower recycling
 of nutrients. Especially in aquatic systems an understanding of diversity
 effects on litter decomposition is still incomplete. 2. Here we conducted
 an experiment to test two main factors associated with global species loss
 that might influence leaf litter decomposition. Firstly, we tested whether
 mixing different leaf species alters litter decomposition rates compared
 to decomposition of these species in monoculture. Secondly, we tested the
 effect of the size structure of a lotic decomposer community on
 decomposition rates. 3. Overall, leaf litter identity strongly affected
 decomposition rates, and the observed decomposition rates matched measures
 of metabolic activity and microbial abundances. While we found some
 evidence of a positive leaf litter diversity effect on decomposition, this
 effect was not coherent across all litter combinations and the effect was
 generally additive and not synergistic. 4. Microbial communities, with a
 reduced functional and trophic complexity, showed a small but significant
 overall reduction in decomposition rates compared to communities with the
 naturally complete functional and trophic complexity, highlighting the
 importance of a complete microbial community on ecosystem functioning. 5.
 Our results suggest that top-down diversity effects of the decomposer
 community on litter decomposition in aquatic systems are of comparable
 importance as bottom-up diversity effects of primary producers.
description: Continuous measurements
 of O2 and particlesThis datafile gives the
 Oxygen as well as particle measurements (CASY counter and flow cytometer)
 used for the analyses across the whole duration of the experiment and for
 the individual replicates. All variables are described and explained in
 the file using hashtags (#) to uncoment them.Data_1_O2_ParticleCounts.xlsxLeaf litter decomposition ratesLeaf litter initial and final weights of all four leaf litter species (Alnus, Fagus, Quercus and Populus) for each of the replicates. Initial and final weight, absolute weight loss and proportional weight loss is given. The variables are described in the file itself, using hashtags (#) to uncoment the variable description.Data_2_litterWeightLoss.xlsx
DOI: 10.7910/dvn/ox1eak
title: Replication Data for: From Olympic Gold to Government Approval?: Limited Evidence of Attribution Error from the 2024 Paris Games

description: This repository provides the data and code required to reproduce the analyses and figures reported in “From Olympic Gold to Government Approval? Limited Evidence of Attribution Error from the 2024 Paris Games" in *Japanese Journal of Political Science*. All scripts are written in R and are organized to mirror the structure of the paper and Supplementary Information.
DOI: 10.5061/dryad.14km1
title: Data from: ECOALIM: a dataset of environmental impacts of feed ingredients used in French animal production

description: Feeds contribute highly to environmental impacts of livestock products.
 Therefore, formulating low-impact feeds requires data on environmental
 impacts of feed ingredients with consistent perimeters and methodology for
 life cycle assessment (LCA). We created the ECOALIM dataset of life cycle
 inventories (LCIs) and associated impacts of feed ingredients used in
 animal production in France. It provides several perimeters for LCIs
 (field gate, storage agency gate, plant gate and harbour gate) with
 homogeneously collected data from French R&D institutes covering
 the 2005–2012 period. The dataset of environmental impacts is available as
 a Microsoft® Excel spreadsheet on the ECOALIM website and provides climate
 change, acidification, eutrophication, non-renewable and total cumulative
 energy demand, phosphorus demand, and land occupation. LCIs in the ECOALIM
 dataset are available in the AGRIBALYSE® database in SimaPro® software.
 The typology performed on the dataset classified the 149 average feed
 ingredients into categories of low impact (co-products of plant origin and
 minerals), high impact (feed-use amino acids, fats and vitamins) and
 intermediate impact (cereals, oilseeds, oil meals and protein crops).
 Therefore, the ECOALIM dataset can be used by feed manufacturers and LCA
 practitioners to investigate formulation of low-impact feeds. It also
 provides data for environmental evaluation of feeds and animal production
 systems. Included in AGRIBALYSE® database and SimaPro®, the ECOALIM
 dataset will benefit from their procedures for maintenance and regular
 updating. Future use can also include environmental labelling of
 commercial products from livestock production.
description: ECOALIM_dataset_V1.0Dataset of Environmental Impacts (LCA) of Feed Ingredients Used in French Animal Production.
DOI: 10.5061/dryad.6dc6k
title: Data from: Differentiation in neutral genes and a candidate gene in the pied flycatcher: using biological archives to track global climate change

description: Global climate change is one of the major driving forces for adaptive
 shifts in migration and breeding phenology and possibly impacts
 demographic changes if a species fails to adapt sufficiently. In Western
 Europe, pied flycatchers (Ficedula hypoleuca) have insufficiently adapted
 their breeding phenology to the ongoing advance of food peaks within their
 breeding area and consequently suffered local population declines. We
 address the question whether this population decline led to a loss of
 genetic variation, using two neutral marker sets (mitochondrial control
 region and microsatellites), and one potentially selectively non-neutral
 marker (avian Clock gene). We report temporal changes in genetic diversity
 in extant populations and biological archives over more than a century,
 using samples from sites differing in the extent of climate change.
 Comparing genetic differentiation over this period revealed that only the
 recent Dutch population, which underwent population declines, showed
 slightly lower genetic variation than the historic Dutch population. As
 that loss of variation was only moderate and not observed in all markers,
 current gene flow across Western and Central European populations might
 have compensated local loss of variation over the last decades. A
 comparison of genetic differentiation in neutral loci versus the Clock
 gene locus provided evidence for stabilizing selection. Furthermore, in
 all genetic markers, we found a greater genetic differentiation in space
 than in time. This pattern suggests that local adaptation or historic
 processes might have a stronger effect on the population structure and
 genetic variation in the pied flycatcher than recent global climate
 changes.
description: Kuhnetal2013_DRYAD_MSIndividual allele lengths of ten unlinked microsatellite loci (n= 311)Kuhnetal2013_DRYAD_ClockIndividual allele lengths of the avian Clock-gene locus (n= 282)Kuhnetal2013_DRYAD_ControlRegAlignSequence alignment of control region sequences (271 bp) used for mtDNA analysesKuhnetal2013_DRYAD_ClockAlignSequence alignment of Clock-gene sequences (235 bp) used for population genetic analyses
DOI: 10.5281/zenodo.18381515
title: Repositorio0

description: Articulo CITCA
DOI: 10.5061/dryad.2564s
title: Data from: Colour pattern homology and evolution in Vanessa butterflies (Nymphalidae: Nymphalini): eyespot characters

description: Ocelli are serially repeated colour patterns on the wings of many
 butterflies. Eyespots are elaborate ocelli that function in predator
 avoidance and deterrence as well as in mate choice. A phylogenetic
 approach was used to study ocelli and eyespot evolution in Vanessa
 butterflies, a genus exhibiting diverse phenotypes among these serial
 homologs. Forty-four morphological characters based on eyespot number,
 arrangement, shape, and the number of elements in each eyespot were
 defined and scored. Ocelli from eight wing cells on the dorsal and ventral
 surfaces of the forewing and hindwing were evaluated. The evolution of
 these characters was traced over a phylogeny of Vanessa based on 7750 DNA
 base pairs from 10 genes. Our reconstruction predicts that the ancestral
 Vanessa had 5 serially arranged ocelli on all four wing surfaces. The
 ancestral state on the dorsal forewing and ventral hindwing was ocelli
 arranged in two heterogeneous groups. On the dorsal hindwing, the
 ancestral state was either homogenous or ocelli arranged in two
 heterogeneous groups. On the ventral forewing, we determined that the
 ancestral state was organized into three heterogeneous groups. In Vanessa,
 almost all ocelli are individuated and capable of independent evolution
 relative to other colour patterns except for the ocelli in cells -1 and 0
 on the dorsal and ventral forewings, which appear to be constrained to
 evolve in parallel. The genus Vanessa is a good model system for the study
 of serial homology and the interaction of selective forces with
 developmental architecture to produce diversity in butterfly colour
 patterns.
description: Abbasi_Marcus_Table_S1Number of eyespot components for each eyespot in Vanessa and out groups.Mr. Bayes data matrix (aligned sequence data set) fileAligned molecular data set in Nexus format used for input into Mr. Bayes.Tree file for Vanessa + out groups acquired from analysis of the data setTree file from Mr. Bayes analysis, the topology of which was used as the scaffold for mapping character states in Mesquite (see additional file).Tree file for Vanessa used in MesquiteTree file for input into Mesquite with character states for each eyespot to be mapped onto the tree.
DOI: 10.5281/zenodo.18381514
title: Repositorio0

description: Articulo CITCA
DOI: 10.5061/dryad.8v212
title: Data from: Artificial night lighting inhibits feeding in moths

description: One major, yet poorly studied, change in the environment is nocturnal
 light pollution, which strongly alters habitats of nocturnally active
 species. Artificial night lighting is often considered as driving force
 behind rapid moth population declines in severely illuminated countries.
 To understand these declines, the question remains whether artificial
 light causes only increased mortality or also sublethal effects. We show
 that moths subjected to artificial night lighting spend less time feeding
 than moths in darkness, with the shortest time under light conditions rich
 in short wavelength radiation. These findings provide evidence for
 sublethal effects contributing to moth population declines. Because
 effects are strong under various types of light compared with dark
 conditions, the potential of spectral alterations as a conservation tool
 may be overestimated. Therefore, restoration and maintenance of darkness
 in illuminated areas is essential for reversing declines of moth
 populations.
description: Data_Moth_ForagingData collected to test the effect of lamp type and size classes of moths on foraging: Day = date of the experiment; Block = refers to the block design (block 1 up to 10); Treatment = lamp type (Green, White or Red) or no lamp (Dark); Species = four moth species; Sex = male versus female; unique.id = unique id of every individual, measured over approximately 8 hours; Obs = observation of foraging by moths every six minutes, where 1 = foraging and 0 = not foraging; Size = size classes of moths, where 1 = large (forewing length &lt; 15mm) and 0 = small (forewing length &gt;= 15mm)Model_Moth_ForagingR-script for analysis of effects of lamp type and size classes of moths (as fixed factors) on foraging (yes/no) using a generalized linear mixed model
DOI: 10.5281/zenodo.18381734
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Henry Harvey, http://www.wikidata.org/entity/Q1378128. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q1378128
DOI: 10.5281/zenodo.8111389
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Henry Harvey, http://www.wikidata.org/entity/Q1378128. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q1378128
DOI: 10.5061/dryad.78dg8
title: Data from: The influence of depression on cognitive control: disambiguating approach and avoidance tendencies

description: Dysfunctions of approach and avoidance motivation play an important role
 in depression, which in turn may affect cognitive control, i.e., the
 ability to regulate thoughts and action to achieve internal goals. We use
 a novel experimental paradigm, i.e. a computer simulated driving-task, to
 study the impact of depression on cognitive control by measuring approach
 and avoidance actions in continuous time. In this task, 39 subjects with
 minimal to severe depression symptoms were instructed to use a joystick to
 move a virtual car as quickly as possible to a target point without
 crossing a stop-sign or crashing into a wall. We recorded their continuous
 actions on a joystick and found that depression 1) leads to further
 stopping distance to task target; and 2) increases the magnitude of late
 deceleration (avoidance) but not early acceleration (approach), which was
 only observed in the stop-sign condition. Taken together, these results
 are consistent with the hypothesis that depressed individuals have greater
 avoidance motivation near stopping target, but are minimally affected by
 approach motivation.
description: PlosOne_DataIncluded are the dataset for analyzing and producing the figures included in the manuscript. Please contact heh001@ucsd.edu for detail.
DOI: 10.5061/dryad.vq349kt
title: Data from: Low genetic diversity in small leading edge populations of a European paleoendemic Ramonda serbica (Gesneriaceae) in Bulgaria

description: Ramonda serbica Panč. (Gesneriaceae) is an endangered endemic species of
 the Balkan Peninsula. It has been the subject of several studies in the
 past, but has not yet been investigated in terms of its genetic variation.
 Here, an Inter Simple Sequence Repeat (ISSR) analysis was performed to
 determine the genetic diversity of five populations sampled from the
 geographically eastern fringe of its range in northwestern Bulgaria. We
 found low levels of genetic diversity and significant genetic
 differentiation among the investigated populations, typical of a leading
 edge scenario. From a conservation point of view, the low genetic
 diversity, together with the presence of only few extant localities,
 underline the need for urgent in situ and ex situ conservation actions to
 ensure the long-term presence of R. serbica in Bulgaria.
description: Mantel test diagram of
 unbiased Nei’s genetic distance (uGD) versus geographic distance (km), for
 testing isolation-by-distanceNJB Online resource
 1.docISSR patterns of Ramonda
 serbicaNJB
 Online resource 2.doc
DOI: 10.5061/dryad.ks430
title: Data from: Sex differences in parental care: gametic investment, sexual selection and social environment

description: Male and female parents often provide different type and amount of care to
 their offspring. Three major drivers have been proposed to explain
 parental sex roles: (i) differential gametic investment by males and
 females that precipitates into sex difference in care, (ii) different
 intensity of sexual selection acting on males and females, and (iii)
 biased social environment that facilitates the more common sex to provide
 more care. Here we provide the most comprehensive assessment of these
 hypotheses using detailed parental care data from 792 bird species
 covering 126 families. We found no evidence for the gametic investment
 hypothesis: neither gamete sizes nor gamete production by males relative
 to females was related to sex difference in parental care. However, sexual
 selection correlated with parental sex roles, because the male share in
 care relative to female decreased with both extra-pair paternity and
 frequency of polygamy. Parental sex roles were also related to social
 environment, because male parental care increased with male-biased adult
 sex ratios. Taken together, our results are consistent with recent
 theories suggesting that gametic investment is not tied to parental sex
 roles, and highlight the importance of both sexual selection and adult sex
 ratios in influencing parental sex roles.
description: Bird parental sex role
 data setData used in the paper
 and its detailed references, provided in an Excel file. The descriptions
 of the variables are provided in the Methods of the
 paper.dataset_Liker_et_al_Evolution.xls