cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.peb3pe
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alluaudina bellyi Mocquard, 1894"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0275585-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82gpuv
title: Occurrence Download

description: A dataset containing 8608 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus taeda L."
 ]
}

 The dataset includes 8608 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001486-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.juw6mk
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron pubigermen J.J.Sm."
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013747-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sppz5q
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus coccinioides Ashe",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 156 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272011-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4uccw
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus ×dispessa Ashe",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272020-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdhayx
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urtica portosanctana Press"
 ]
}

 The dataset includes 159 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025806-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gd7pts
title: Occurrence Download

description: A dataset containing 1285 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Discoglossus sardus Tschudi, 1837"
 ]
}

 The dataset includes 1285 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278437-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m982cc
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eunicella verrucosa (Pallas, 1766)"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025795-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywkyqj
title: Occurrence Download

description: A dataset containing 1681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crataegus crus-galli L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 1681 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgkt5p
title: Occurrence Download

description: A dataset containing 2134 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piper betle L."
 ]
}

 The dataset includes 2134 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001499-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md9bqf
title: Occurrence Download

description: A dataset containing 3597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Giliastrum (Brand) Rydb."
 ]
}

 The dataset includes 3597 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209977-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ersfr4
title: Occurrence Download

description: A dataset containing 5742 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ipomoea lacunosa L."
 ]
}

 The dataset includes 5742 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001461-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4mafy
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xanthorhiza simplicissima Marshall",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 226 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271971-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4e56y
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Solanum bonariense L."
 ]
}

 The dataset includes 46 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001502-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yadt5t
title: Occurrence Download

description: A dataset containing 571130 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala L."
 ]
}

 The dataset includes 571130 records from 1464 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209999-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57903/uj/ehckht
title: Development of correction techniques for the J-PET scanner

description: The data includes the non-attenuation corrected, attenuation corrected, random corrected, scatter corrected images in interfile format.
DOI: 10.15468/dl.7wjyrm
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia sclarea",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 116 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014688-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jnvmjm
title: Occurrence Download

description: A dataset containing 54505094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "IucnRedListCategory is LC",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 54505094 records from 650 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014596-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17152068
title: Engineering Escherichia coli for polyethylene terephthalate powder biodegradation via computational rewiring of an outer membrane protein

description: Herein are detailed the raw data (unprocessed HPLC data files, and raw ESI-MS files) that are the base of the results of the article "Engineering Escherichia coli for polyethylene terephthalate powder biodegradation via computational rewiring of an outer membrane protein"
DOI: 10.15468/dl.tevz47
title: Occurrence Download

description: A dataset containing 33972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "Year is 1986"
 ]
}

 The dataset includes 33972 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014684-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d95w37
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Primulina wuae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014687-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjkz96
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rachunia cymbiformis"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014690-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17148657
title: ESRGAN-CT-SR: Training Runs (Pretraining/Finetuning) & Evaluations

description: Dieses Dataset enthält die Trainings- und Evaluationsartefakte, auf denen meine Bachelorarbeit beruht. 

Pretraining_BlurNoise_x2: best.pth, last.pth, config.json, metrics.csv, train.log, training_curve.png.

Finetuning_BlurNoise_x2: best.pth, best_live.pth, last.pth, last_live.pth, config.json, metrics.csv, train.log, loss_components.png, loss_components_weighted.png, loss_total.png, loss_total_nogan.pngEvaluations: zusammengefasste Resultate (CSV/JSON, Plots) für alle in der Bachelorarbeit beschriebenen Experimente.Alle Daten sind konsistent zur in der Bachelorarbeit beschriebenen HU-Normierung, Degradationspipeline (Blurnoise) und Seed-Konfiguration.
DOI: 10.5281/zenodo.17148656
title: ESRGAN-CT-SR: Training Runs (Pretraining/Finetuning) & Evaluations

description: Dieses Dataset enthält die Trainings- und Evaluationsartefakte, auf denen meine Bachelorarbeit beruht. 

Pretraining_BlurNoise_x2: best.pth, last.pth, config.json, metrics.csv, train.log, training_curve.png.

Finetuning_BlurNoise_x2: best.pth, best_live.pth, last.pth, last_live.pth, config.json, metrics.csv, train.log, loss_components.png, loss_components_weighted.png, loss_total.png, loss_total_nogan.pngEvaluations: zusammengefasste Resultate (CSV/JSON, Plots) für alle in der Bachelorarbeit beschriebenen Experimente.Alle Daten sind konsistent zur in der Bachelorarbeit beschriebenen HU-Normierung, Degradationspipeline (Blurnoise) und Seed-Konfiguration.
DOI: 10.15468/dl.uge9wb
title: Occurrence Download

description: A dataset containing 3562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Chinese Taipei, Macao)",
 "TaxonKey is Lonicera japonica"
 ]
}

 The dataset includes 3562 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014689-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjnyb5
title: Occurrence Download

description: A dataset containing 1650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Chinese Taipei, Macao)",
 "TaxonKey is Arctium lappa"
 ]
}

 The dataset includes 1650 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014691-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvgee9
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia sclarea",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014692-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvqh3e
title: Occurrence Download

description: A dataset containing 456 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia sclarea",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 456 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014694-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7uvcx
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia sclarea",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014695-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w22cp7
title: Occurrence Download

description: A dataset containing 970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycodon aulicus"
 ]
}

 The dataset includes 970 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014699-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.336bxj
title: Occurrence Download

description: A dataset containing 31132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "Year is 1987"
 ]
}

 The dataset includes 31132 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014697-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17151994
title: GenixRL Scores Database: Pre-computed Variant Pathogenicity Scores from dbNSFP (BayesDel, ClinPred, MetaRNN)

description: This dataset provides pre-computed pathogenicity scores for genomic variants, specifically designed for use with the GenixRL (https://github.com/shabbas313/GenixRL). 

The database is derived from dbNSFP (dbNSFP5.2a_grch38.gz) and includes scores from key predictors: BayesDel_noAF, BayesDel_addAF, ClinPred, and MetaRNN. 



Dataset Contents



genixrl_scores_db.tsv.gz: Compressed TSV file containing variant annotations with columns for chromosome, position, reference allele, alternate allele, and scores (BayesDel_noAF_score, BayesDel_addAF_score, ClinPred_score, MetaRNN_score). The file is tab-separated and gzip-compressed for efficiency.

genixrl_scores_db.tsv.gz.tbi: Tabix index file for fast querying of the TSV using tools like pysam in Python.




Methods and GenerationThe database was generated by querying dbNSFP (a comprehensive database of non-synonymous functional predictions) for a curated set of variants relevant to the GenixRL model.



Scores were extracted for the following predictors:



BayesDel_noAF and BayesDel_addAF: Bayesian deleteriousness scores for missense variants.

ClinPred: Clinical predictor score for pathogenic potential.

MetaRNN: Meta-ensemble RNN score for variant pathogenicity.




Normalization is applied in the GenixRL model: BayesDel scores are scaled to [0,1] using min=-1.29334 and max=0.75731. 

Missing values are imputed using training medians from the associated model artifacts.
DOI: 10.5281/zenodo.17151993
title: GenixRL Scores Database: Pre-computed Variant Pathogenicity Scores from dbNSFP (BayesDel, ClinPred, MetaRNN)

description: This dataset provides pre-computed pathogenicity scores for genomic variants, specifically designed for use with the GenixRL (https://github.com/shabbas313/GenixRL). 

The database is derived from dbNSFP (dbNSFP5.2a_grch38.gz) and includes scores from key predictors: BayesDel_noAF, BayesDel_addAF, ClinPred, and MetaRNN. 



Dataset Contents



genixrl_scores_db.tsv.gz: Compressed TSV file containing variant annotations with columns for chromosome, position, reference allele, alternate allele, and scores (BayesDel_noAF_score, BayesDel_addAF_score, ClinPred_score, MetaRNN_score). The file is tab-separated and gzip-compressed for efficiency.

genixrl_scores_db.tsv.gz.tbi: Tabix index file for fast querying of the TSV using tools like pysam in Python.




Methods and GenerationThe database was generated by querying dbNSFP (a comprehensive database of non-synonymous functional predictions) for a curated set of variants relevant to the GenixRL model.



Scores were extracted for the following predictors:



BayesDel_noAF and BayesDel_addAF: Bayesian deleteriousness scores for missense variants.

ClinPred: Clinical predictor score for pathogenic potential.

MetaRNN: Meta-ensemble RNN score for variant pathogenicity.




Normalization is applied in the GenixRL model: BayesDel scores are scaled to [0,1] using min=-1.29334 and max=0.75731. 

Missing values are imputed using training medians from the associated model artifacts.
DOI: 10.15468/dl.6nfyvg
title: Occurrence Download

description: A dataset containing 982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Corydoras"
 ]
}

 The dataset includes 982 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014701-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzsc2q
title: Occurrence Download

description: A dataset containing 2456 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Naja naja"
 ]
}

 The dataset includes 2456 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014702-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83wngp
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oligodon arnensis"
 ]
}

 The dataset includes 392 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014703-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6085/aa/istcxx_xxxitv2xmsr01_20180510.40.1
title: (:unkn)
DOI: 10.6085/aa/istsxx_xxxitv2xmsr01_20171128.40.1
title: (:unkn)
DOI: 10.6085/aa/istcxx_xxxitv2xmsr01_20171122.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Stillwater (ISTCXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Stillwater by MARINe/PISCO. Measurements were collected using Temperature Loggers from Onset Computer Corp
DOI: 10.6085/aa/istcxx_xxxitv2xmsr01_20171122.40.1
title: (:unkn)
DOI: 10.6085/aa/israxx_xxxitv2xmsr01_20170606.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Stornetta (ISRAXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Stornetta by MARINe/PISCO. Measurements were collected using Temperature Loggers from Onset Computer Corp
DOI: 10.6085/aa/israxx_xxxitv2xmsr01_20170606.40.1
title: (:unkn)
DOI: 10.6085/aa/isopxx_xxxitv2xmsr01_20180501.40.1
title: (:unkn)
DOI: 10.6085/aa/isopxx_xxxitv2xmsr01_20171122.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Soberanes (ISOPXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Soberanes by MARINe/PISCO. Measurements were collected using Temperature Loggers from Onset Computer Corp
DOI: 10.6085/aa/isopxx_xxxitv2xmsr01_20180501.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Soberanes (ISOPXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Soberanes by MARINe/PISCO. Measurements were collected using Temperature Loggers from Onset Computer Corp
DOI: 10.6085/aa/ishbxx_xxxitv2xmsr01_20171026.40.1
title: (:unkn)
DOI: 10.6085/aa/isopxx_xxxitv2xmsr01_20171122.40.1
title: (:unkn)
DOI: 10.6085/aa/ishbxx_xxxitv2xmsr01_20171026.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Shell Beach (ISHBXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Shell Beach by MARINe/PISCO. Measurements were collected using Temperature Loggers from Onset Computer Corp
DOI: 10.6085/aa/iserxx_xxxitv2xmsr01_20170606.40.1
title: (:unkn)
DOI: 10.6085/aa/iserxx_xxxitv2xmsr01_20170606.50.1
title: MARINe/PISCO: Intertidal: site temperature data: Sea Ranch (ISERXX)

description: This metadata record describes a mix of intertidal seawater and air temperature data collected at Sea Ranch by MARINe/PISCO. Measurements were collected using Temperature Loggers from Onset Computer Corp