cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5033142
title: Data from Schmitt et al. 2020: A causal role of area hMST for self-motion perception in humans. Cerebral Cortex Communications

description: <strong>Dataset associated with the following publication:</strong> Constanze Schmitt, Bianca R Baltaretu, J Douglas Crawford, Frank Bremmer, A Causal Role of Area hMST for Self-Motion Perception in Humans, <em>Cerebral Cortex Communications</em>, Volume 1, Issue 1, 2020, tgaa042, https://doi.org/10.1093/texcom/tgaa042 Published 2020 July 20. <strong>Description of dataset:</strong> In our study we presented an optic flow stimulus simulating forward self-motion across a ground plane in one of three directions (30° to the left, straight ahead, 30° to the right) to eight human participants. In 57% of all trials TMS pulses were applied either to right hemisphere hMST or a control area while the optic flow stimulus was presented. Participants indicated the perceived heading of the self-motion stimulus. The dataset contains the responses (perceived headings) of all eight participants (s1 to s8). The responses are reported here in degrees with 0 degrees representing a movement straight ahead, negative values describing movements forward to the left and positive values describing movements forward to the right.
description: This work was supported by Deutsche Forschungsgemeinschaft (IRTG-1901 and CRC/TRR-135, project number 222641018) and Natural Sciences and Engineering Council of Canada (NSERC).
DOI: 10.6073/pasta/542e32dde119c6ceb1747b0dd86ed7a4
title: Microclimate at Harvard Forest HEM, LPH and EMS Towers since 2005

description: Microclimatic data are collected continuously within footprint areas of the flux towers in order to (1) understand relationships between climatic and microclimatic conditions and carbon dioxide and water vapor exchange between forest and atmosphere, (2) to develop predictive models for the exchange rates of these gases, based on microclimate data, (3) detect long-term trends in climate and microclimate at the sites and (4) determine whether the response of carbon dioxide and water vapor exchange processes to climate or microclimate is changing over time. The primary climatic and microclimatic variables measured at these sites include: above-canopy photosynthetically active radiation (PAR), forest understory PAR at 1 m height, total net radiation exchange measured above the forest canopy, air temperature and relative humidity above the forest canopy, forest understory air temperature at 20 cm and 1 m above ground level (shielded but not ventilated thermocouple sensors, used only to estimate nighttime understory air temperature), soil temperature at 10 cm depth, and soil moisture.
DOI: 10.6073/pasta/ede46298be9d036b6dcc0c1ee971d68b
title: Fuel Loading in Simulated Hurricane Experiment at Harvard Forest since 1993

description: Wind disturbance profoundly shapes temperate forests but few studies have evaluated patterns and mechanisms of long-term forest dynamics following major windthrows. In 1990, we initiated a large hurricane simulation experiment in a 0.8 ha manipulation (pulldown) and 0.6 ha control area of a maturing Quercus rubra-Acer rubrum forest in New England. We toppled 276 trees in the pulldown, using a winch and cable, in the northwesterly direction of natural treefall from major hurricanes. Eighty percent of canopy trees and two-thirds of all trees greater than 5 cm dbh suffered direct and indirect damage. An enormous input of dead wood was one result of the manipulation. Many perceive an increased risk of wildfire after trees are blown down, but this depends on the amount, size, and persistence of the dead wood inputs.
DOI: 10.5281/zenodo.5033135
title: Data supporting the findings of the study: "Neural correlates of self-other distinction in patients with schizophrenia spectrum disorders: The roles of agency and hand identity"

description: Data supporting the findings of the study. Details are specified in the readme file.
DOI: 10.5281/zenodo.3923591
title: Data supporting the findings of the study: "Neural correlates of self-other distinction in patients with schizophrenia spectrum disorders: The roles of agency and hand identity"

description: Data supporting the findings of the study. Details are specified in the readme file.
DOI: 10.6084/m9.figshare.14849760.v1
title: DataFile

description: Data presented in research paper.
DOI: 10.6084/m9.figshare.14849760
title: DataFile

description: Data presented in research paper.
DOI: 10.5281/zenodo.5033187
title: Evaluation of different deployment strategies for larviciding to control malaria – a simulation study

description: Simulation datasets for: "<strong>Evaluation of different deployment strategies for larviciding to control malaria – a simulation study</strong>". The folders include a description folder with relevant input files for simulations in OpenMalaria and the processedExpResults includes the Rdataframes, generated from the raw simulation outputs, used for analysis.
DOI: 10.5281/zenodo.5033186
title: Evaluation of different deployment strategies for larviciding to control malaria – a simulation study

description: Simulation datasets for: "<strong>Evaluation of different deployment strategies for larviciding to control malaria – a simulation study</strong>". The folders include a description folder with relevant input files for simulations in OpenMalaria and the processedExpResults includes the Rdataframes, generated from the raw simulation outputs, used for analysis.
DOI: 10.5281/zenodo.5032366
title: Supplementary information for phylogenetic benchmarking study

description: This dataset comprises the following files: - A tarball containing all alignments per run, used to infer phylogenies from (gzipped) - A tarball containing all assemblies (where applicable) per run (gzipped) - Several files with final results of the analyses. These can be read directly into SuperPlotsOfData to obtain the plots in our paper. RF = Robinson Foulds distance, KC = Kendall Colijn metric. L_0, L_0.5 and L_1 indicate lambda values of 0, 0.5 and 1 respectively in the calculation of the Kendall Colijn metric. full_data.csv contains all data. full_data_nomlst.csv contains all data, excluding the runs employing MLST alignment. run_differences_absolute.csv contains absolute differences between identical runs.
DOI: 10.5281/zenodo.4776758
title: UF & UAB's Phase I Demonstration Study: Older Driver Experiences with Autonomous Vehicle Technology (Project D2)

description: Enclosed you will find the data collected during our STRIDE Phase I research project (D2) and a data dictionary.
DOI: 10.5281/zenodo.4776757
title: UF & UAB's Phase I Demonstration Study: Older Driver Experiences with Autonomous Vehicle Technology (Project D2)

description: Enclosed you will find the data collected during our STRIDE Phase I research project (D2) and a data dictionary.
DOI: 10.25345/c5df94
title: MassIVE MSV000087704 - Pause_Endofin_HD_PTP_ESCRT_2021_AP_MS_Velos
title: This dataset consists of 14 raw MS files and associated peak lists and result files, acquired on LTQ-Orbitrap Velos (Thermo Electron) mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by the lab group of Arnim Pause and affinity purification and mass spectrometric acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Nicole St-Denis. The files are associated with a manuscript submitted for publication by Kazan et al. in which endofin and HD-PTPs complimentary functions in receptor-mediated endocytosis and lysosomal degradation is investigated. Arnim Pause is the corresponding author of the manuscript (arnim.pause@mcgill.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
DOI: 10.24431/rw1k59k
title: Shipboard EK60 - Fisheries Acoustics backscatter data, Arctic Integrated Ecosystem Research Program, Chukchi Sea 2019

description: These data are part of the Arctic IES component of the Arctic Integrated Ecosystem Research Program (IERP), sponsored by the North Pacific Research Board (NPRB), Collaborative Alaskan Arctic Studies Program (formerly the North Slope Borough/Shell Baseline Studies Program), Bureau of Ocean Energy Management (BOEM), and the Office of Naval Research Marine Mammals and Biology Program. To investigate the distribution, life history, and interactions of biological communities in the U.S. Continental Region of the NE Chukchi Sea a survey was conducted from August - September 2019. Acoustic backscatter was collected at 38 and 120 kHz along survey transects. This dataset contains a filtered 38 kHz dataset to represent scattering from fishes. Data is integrated into 5-meter depth bins and .1 nautical mile transect segments, and presented here in CSV format with interval, depth, and GPS identifiers.
DOI: 10.24431/rw1k59l
title: Shipboard EK60 - Fisheries Acoustics backscatter data, Arctic Integrated Ecosystem Research Program, Chukchi Sea 2017

description: These data are part of the Arctic IES component of the Arctic Integrated Ecosystem Research Program (IERP), sponsored by the North Pacific Research Board (NPRB), Collaborative Alaskan Arctic Studies Program (formerly the North Slope Borough/Shell Baseline Studies Program), Bureau of Ocean Energy Management (BOEM), and the Office of Naval Research Marine Mammals and Biology Program. To investigate the distribution, life history, and interactions of biological communities in the U.S. Continental Region of the NE Chukchi Sea a survey was conducted from August - September 2017. Acoustic backscatter was collected at 38 and 120 kHz along survey transects. This dataset contains a filtered 38 kHz dataset to represent scattering from fishes. Data is integrated into 5-meter depth bins and .1 nautical mile transect segments, and presented here in CSV format with interval, depth, and GPS identifiers.
DOI: 10.15482/usda.adc/1522654
title: 2019 Farm to School Census
DOI: 10.25345/c58r77
title: MassIVE MSV000087705 - Pause_Endofin_HD_PTP_ESCRT_2021_BirA_5600
title: This dataset consists of 16 raw MS files and associated peak lists and result files, acquired on a TripleTOF 5600 (AB SCIEX, Concord, ON, Canada) mass spectrometer operated in Data Independent Acquisition mode (SWATH). Samples were generated by the lab group of Arnim Pause and streptavidin pulldowns and mass spectrometric acquisition was performed by Zhen-Yuan Lin. Analysis was performed by Claire Martin and Anne-Claude Gingras. The files are associated with a manuscript submitted for publication by Kazan et al. in which endofin and HD-PTPs complimentary functions in receptor-mediated endocytosis and lysosomal degradation is investigated. Arnim Pause is the corresponding author of the manuscript (arnim.pause@mcgill.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
DOI: 10.6084/m9.figshare.14847963
title: Responses of soil bacterial and fungal communities to freeze-thaw cycles in a Chinese temperate forest

description: The structure and function of soil microbial community may be different in different stages of freeze-thaw cycle. The dataset contain bacteria 16S V4 and fungi ITS1 amplification sequencing<br>
DOI: 10.7302/b42x-e269
title: DBDView
DOI: 10.5281/zenodo.5019187
title: Enabling single-molecule localization microscopy in turbid food emulsions

description: Supplementary and raw data
DOI: 10.5281/zenodo.4587966
title: Enabling single-molecule localization microscopy in turbid food emulsions

description: Supplementary and raw data
DOI: 10.25345/c54z59
title: MassIVE MSV000087706 - Pause_Endofin_HD_PTP_ESCRT_2021_MT_6600
title: This dataset consists of 9 raw MS files and associated peak lists and result files, acquired on a TripleTOF 6600 (AB SCIEX, Concord, ON, Canada) mass spectrometer operated in Data Independent Acquisition mode (SWATH). Samples were generated by Claire Martin and streptavidin pulldowns and mass spectrometric acquisition was performed by Claire Martin. Analysis was performed by Claire Martin. The files are associated with a manuscript submitted for publication by Kazan et al. in which endofin and HD-PTPs complimentary functions in receptor-mediated endocytosis and lysosomal degradation is investigated. Arnim Pause is the corresponding author of the manuscript (arnim.pause@mcgill.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca).
DOI: 10.5281/zenodo.5033369
title: Centralized Punishment in Public Good Experiments

description: The data is of the economic experiment, namely the Public Goods Game with centralized punishment conducted in Georgia in October 2020. The experiment was conducted online via LIONESS web-based software. The experiment was conducted in Georgian Language. The data is translated from Georgian language into English language as well as the instructions used in the experiment. The participants were mostly students of different major. The data consist of three treatments: (1) Control treatment - a standard Public Goods Game (PPG) of 10 rounds; (2) I&P9090 and (3) I&P9010 treatments of two stage PGG with centralized punishment mechanism with different probabilities of punishment of free riders, each stage was of 10 rounds, in stage 1 participants play PGG with centralized punishment and in stage 2 players play standard PGG of ten rounds. All three treatments were partner treatments with constant group composition.
DOI: 10.5281/zenodo.5033368
title: Centralized Punishment in Public Good Experiments

description: The data is of the economic experiment, namely the Public Goods Game with centralized punishment conducted in Georgia in October 2020. The experiment was conducted online via LIONESS web-based software. The experiment was conducted in Georgian Language. The data is translated from Georgian language into English language as well as the instructions used in the experiment. The participants were mostly students of different major. The data consist of three treatments: (1) Control treatment - a standard Public Goods Game (PPG) of 10 rounds; (2) I&P9090 and (3) I&P9010 treatments of two stage PGG with centralized punishment mechanism with different probabilities of punishment of free riders, each stage was of 10 rounds, in stage 1 participants play PGG with centralized punishment and in stage 2 players play standard PGG of ten rounds. All three treatments were partner treatments with constant group composition.
DOI: 10.6084/m9.figshare.14850099
title: Bos frontalis (Gayal) from Bangladesh predicted genes 1.0

description: Predicted genes of Bos frontalis from AUGUSTUS 3.4.0.
DOI: 10.6084/m9.figshare.14850099.v1
title: Bos frontalis (Gayal) from Bangladesh predicted genes 1.0

description: Predicted genes of Bos frontalis from AUGUSTUS 3.4.0.
DOI: 10.6084/m9.figshare.14850063.v1
title: Untitled Item

description: Data from the Scottish contingent.<br>
DOI: 10.6084/m9.figshare.14850132
title: Bos frontalis (Gayal) from Bangladesh functional genome annotation 1.0

description: Functional Genome annotation of Bos frontalis by Pannzer2.
DOI: 10.6084/m9.figshare.14850132.v1
title: Bos frontalis (Gayal) from Bangladesh functional genome annotation 1.0

description: Functional Genome annotation of Bos frontalis by Pannzer2.
DOI: 10.6084/m9.figshare.14850135
title: WR22 de-trended datasets

description: De-trended datasets of WR22 from the BRITE 2017 and 2018 observation runs.
DOI: 10.6084/m9.figshare.14850135.v1
title: WR22 de-trended datasets

description: De-trended datasets of WR22 from the BRITE 2017 and 2018 observation runs.
DOI: 10.6084/m9.figshare.14850138
title: Bos frontalis (Gayal) from Bangladesh gene ontology (GO) 1.0

description: Gene Ontology annotation of Bos frontalis by Pannzer2.
DOI: 10.6084/m9.figshare.14850144
title: Hypoxia Performance Curve: Assess a Whole-Organism Metabolic Shift from a Maximum Aerobic Capacity towards a Glycolytic Capacity in Fish

description: Here is the pub archived data for the review of hypoxia performance curve.
DOI: 10.6084/m9.figshare.14850144.v2
title: Hypoxia Performance Curve: Assess a Whole-Organism Metabolic Shift from a Maximum Aerobic Capacity towards a Glycolytic Capacity in Fish

description: Here is the pub archived data for the review of hypoxia performance curve.
DOI: 10.6084/m9.figshare.14850144.v1
title: Hypoxia Performance Curve: Assess a Whole-Organism Metabolic Shift from a Maximum Aerobic Capacity towards a Glycolytic Capacity in Fish

description: Here is the pub archived data for the review of hypoxia performance curve.
DOI: 10.5281/zenodo.5027418
title: pKaDatabase for Stacking Gaussian Processes to Improve pKa Predictions in the SAMPL7 Challenge

description: A curated a database of small molecules with experimentally measured pKa values. This pickle file can be loaded into memory using Pandas. In the code block below we will print out the columns of the DataFrame: <pre><code class="language-python">import pandas as pd df = pd.load("pKaDatabase.pkl") print(df.keys()). # print the columns</code></pre> ['deprotonated microstate ID', 'protonated microstate ID', 'deprotonated microstate smiles', 'protonated microstate smiles', 'AM1BCC partial charge (prot. atom)', 'AM1BCC partial charge (deprot. atom)', 'AM1BCC partial charge (prot. atoms 1 bond away)', 'AM1BCC partial charge (deprot. atoms 1 bond away)', 'AM1BCC partial charge (prot. atoms 2 bond away)', 'AM1BCC partial charge (deprot. atoms 2 bond away)', 'Gasteiger partial charge (prot. atom)', 'Gasteiger partial charge (deprot. atom)', 'Gasteiger partial charge (prot. atoms 1 bond away)', 'Gasteiger partial charge (deprot. atoms 1 bond away)', 'Gasteiger partial charge (prot. atoms 2 bond away)', 'Gasteiger partial charge (deprot. atoms 2 bond away)', 'Extented Hückel partial charge (prot. atom)', 'Extented Hückel partial charge (deprot. atom)', 'Extented Hückel partial charge (prot. atoms 1 bond away)', 'Extented Hückel partial charge (deprot. atoms 1 bond away)', 'Extented Hückel partial charge (prot. atoms 2 bond away)', 'Extented Hückel partial charge (deprot. atoms 2 bond away)', '∆G_solv (kJ/mol) (prot-deprot)', 'SASA (Shrake)', 'SASA (Lee)', 'Bond Order', 'Change in Enthalpy (kJ/mol) (prot-deprot)', 'pKa','href', 'num ionizable groups', 'Weight', 'pKa source'] For more information regarding feature calculations, please read the following paper: Raddi, Robert, and Vincent Voelz. "Stacking Gaussian Processes to Improve pKa Predictions in the SAMPL7 Challenge." (2021). 10.26434/chemrxiv.14650302.v1
description: Funding: National Institute of General Medical Sciences (R01GM123296)
description: {"references": ["Raddi, R., & Voelz, V. (2021). Stacking Gaussian Processes to Improve pKa Predictions in the SAMPL7 Challenge.", "Sushko, I., Novotarskyi, S., K\u00f6rner, R., Pandey, A. K., Rupp, M., Teetz, W., ... & Tetko, I. V. (2011). Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information. Journal of computer-aided molecular design, 25(6), 533-554.", "Caine, B. A., Bronzato, M., & Popelier, P. L. (2019). Experiment stands corrected: accurate prediction of the aqueous p K a values of sulfonamide drugs using equilibrium bond lengths. Chemical science, 10(25), 6368-6381.", "Settimo, L., Bellman, K., & Knegtel, R. M. (2014). Comparison of the accuracy of experimental and predicted pKa values of basic and acidic compounds. Pharmaceutical research, 31(4), 1082-1095."]}
DOI: 10.5281/zenodo.5027417
title: pKaDatabase for Stacking Gaussian Processes to Improve pKa Predictions in the SAMPL7 Challenge

description: A curated a database of small molecules with experimentally measured pKa values. This pickle file can be loaded into memory using Pandas. In the code block below we will print out the columns of the DataFrame: <pre><code class="language-python">import pandas as pd df = pd.load("pKaDatabase.pkl") print(df.keys()). # print the columns</code></pre> ['deprotonated microstate ID', 'protonated microstate ID', 'deprotonated microstate smiles', 'protonated microstate smiles', 'AM1BCC partial charge (prot. atom)', 'AM1BCC partial charge (deprot. atom)', 'AM1BCC partial charge (prot. atoms 1 bond away)', 'AM1BCC partial charge (deprot. atoms 1 bond away)', 'AM1BCC partial charge (prot. atoms 2 bond away)', 'AM1BCC partial charge (deprot. atoms 2 bond away)', 'Gasteiger partial charge (prot. atom)', 'Gasteiger partial charge (deprot. atom)', 'Gasteiger partial charge (prot. atoms 1 bond away)', 'Gasteiger partial charge (deprot. atoms 1 bond away)', 'Gasteiger partial charge (prot. atoms 2 bond away)', 'Gasteiger partial charge (deprot. atoms 2 bond away)', 'Extented Hückel partial charge (prot. atom)', 'Extented Hückel partial charge (deprot. atom)', 'Extented Hückel partial charge (prot. atoms 1 bond away)', 'Extented Hückel partial charge (deprot. atoms 1 bond away)', 'Extented Hückel partial charge (prot. atoms 2 bond away)', 'Extented Hückel partial charge (deprot. atoms 2 bond away)', '∆G_solv (kJ/mol) (prot-deprot)', 'SASA (Shrake)', 'SASA (Lee)', 'Bond Order', 'Change in Enthalpy (kJ/mol) (prot-deprot)', 'pKa','href', 'num ionizable groups', 'Weight', 'pKa source'] For more information regarding feature calculations, please read the following paper: Raddi, Robert, and Vincent Voelz. "Stacking Gaussian Processes to Improve pKa Predictions in the SAMPL7 Challenge." (2021). 10.26434/chemrxiv.14650302.v1
description: Funding: National Institute of General Medical Sciences (R01GM123296)
description: {"references": ["Raddi, R., & Voelz, V. (2021). Stacking Gaussian Processes to Improve pKa Predictions in the SAMPL7 Challenge.", "Sushko, I., Novotarskyi, S., K\u00f6rner, R., Pandey, A. K., Rupp, M., Teetz, W., ... & Tetko, I. V. (2011). Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information. Journal of computer-aided molecular design, 25(6), 533-554.", "Caine, B. A., Bronzato, M., & Popelier, P. L. (2019). Experiment stands corrected: accurate prediction of the aqueous p K a values of sulfonamide drugs using equilibrium bond lengths. Chemical science, 10(25), 6368-6381.", "Settimo, L., Bellman, K., & Knegtel, R. M. (2014). Comparison of the accuracy of experimental and predicted pKa values of basic and acidic compounds. Pharmaceutical research, 31(4), 1082-1095."]}
DOI: 10.3886/e119446v107
title: COVID-19 US State Policy Database

description: For questions or comments about the database please contact:<br>Alexandra Skinner <br>skinnera@bu.edu <br>Research Fellow & Database Manager<br>Department of Health Law, Policy & Management <br>Boston University School of Public Health<br><br>Database of state policies on closures, shelter-in-place orders, housing protections, changes to Medicaid and SNAP, physical distancing closures, reopening, and more created by researchers at the Boston University School of Public Health. Policies included are state-wide directives or mandates, not guidance or recommendations. In order for a policy to be included, it must apply to the entire state. We are working quickly to go through state government websites to make the policy database as complete and accurate as possible in a rapidly changing policy context. If you use data on a given policy, we encourage you to triangulate based on additional sources of policy data and to review the source documentation to consider the coding decisions that are right for your work. Of course, please email us if you note a discrepancy so we can improve the database for everyone. State policy source documentation can be found at: tinyurl.com/statepolicysources.
description: State policies. Smallest Geographic Unit: State
description: other; Contributors: Megan Cole Brahim, Noa Krawczyk, Carolyn Hoffman, Claire Corkish, Elizabeth Ferrara, Elizabeth Long, Emily Baroni, Faith Contador, Hannah Simon, Morgan Simko, Rachel Scheckman, Sarah Brewer, Sue Kulkarni, Felicia Heykoop, Manish Patel, Aishwarya Vidyasagaran, Andrew Chiao, Cara Safon, Samantha Burkhart, Harry Jung, Victor Lee, Marina MacKinnon, Aarohi Rede, Marie Vearling, Sophie Li, Christina Wang, Tim Levengood, María Jordán P. Emma Chistolini