cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kvnx6vt8x9.1
title: A dataset of branch reflectance spectra for seven boreal and temperate tree species

description: This dataset contains a novel spectral library capturing the hyperspectral reflectance of branches from seven boreal and temperate tree species. The reflectance spectra of branches were measured for coniferous and broadleaf tree species: European aspen (Populus tremula L.), goat willow (Salix caprea L.), grey alder (Alnus incana (L.) Moench), silver birch (Betula pendula Roth), Scots pine (Pinus sylvestris L.), Norway spruce (Picea abies (L.) H. Karst), and Siberian larch (Larix sibirica Ledeb.). The branch samples were collected in southern Finland between September and November 2024, and measured in laboratory conditions using a spectroradiometer (ASD FieldSpec 4 Standard-Res) coupled with a custom contact probe (Thorlabs Bifurcated 19-Fiber Bundle), an integrating sphere (Avantes Avasphere-30), and a light source (Ocean Optics HL-2000). In addition to the spectral measurements, auxiliary field measurements were conducted to describe the sampled branch and the tree it was detached from, e.g., tree height and branch length. 

- The file "contact_probe_spectral_measurements.csv" contains conical-conical reflectance factor (CCRF) spectra of tree branches measured with a contact probe setup and a spectroradiometer. 
- The file "integrating_sphere_spectral_measurements.csv" contains directional-hemispherical reflectance factor (HDRF) spectra of tree branches measured with an integrating sphere setup and a spectroradiometer. 
- The file "sampled_tree_descriptions.csv" contains auxiliary data for each of the sampled trees. 
- The file "sample_photos.pdf" shows photographs of the measured branch samples and the trees they were detached from. 

If using this data, please cite this Mendeley Dataset: 
- Juola, Jussi; Rautiainen, Miina; Hovi, Aarne (2025), “A dataset of branch reflectance spectra for seven boreal and temperate tree species”, Mendeley Data, V1, doi: 10.17632/kvnx6vt8x9.1
DOI: 10.17632/x55fmmwcyp
title: Internal and External Validation Datasets for Use in Detecting Right Ventricular Dysfunction in Acute Pulmonary Embolism

description: This study included patients with acute pulmonary embolism (PE) confirmed by contrast-enhanced multidetector CT. Eligibility required echocardiography and lower-extremity venous Doppler reports. Exclusion criteria were pregnancy, missing imaging, chronic thromboembolic pulmonary hypertension, prior right heart dysfunction, and age &lt;18 years.

Each row in the dataset provides information about a patient's characteristics. The first column shows the gender of the PE patients, the second column shows their ages, and the other columns show various characteristics used in the diagnosis of RVD. The last column shows whether the PE patients were diagnosed with RVD by the physician. This dataset can be used in the artificial intelligence models. It is a suitable dataset for the classification performance of various models.
We established two non-overlapping cohorts:
• A development set of n = 250 patients (103 positive, 147 negative)
• An external validation set of n = 113 patients (36 positive, 77 negative).
Outcome (Target Variable). We defined the target variable as Right Ventricular Involvement (RVD), coded as 1 = Presence, 0 = Absence, based on echocardiographic assessment. 

Table 1. List of features indicating the range of changes in values.
№ Feature name Value range Value description
1 Sex ( 0-1 ) (1:Male, 0:Female)
2 Age ( 22-93 ) -
3 Thrombus Main Pulmonary ( 0-1 ) (1: Presence, 0: Absence)
4 Thrombus Lobe Arteries ( 0-1 ) (1: Presence, 0: Absence)
5 Thrombus Segment ( 0-1 ) (1: Presence, 0: Absence)
6 Thrombus Subsegment ( 0-1 ) (1: Presence, 0: Absence)
7 Thrombus ( 0-1 ) (1: Unilateral, 0: Bilateral)
8 DVT ( 0-1 ) (1: Presence, 0: Absence)
9 DVT Distal Ven ( 0-1 ) (1: Presence, 0: Absence)
10 DVT Proksimal Ven ( 0-1 ) (1: Presence, 0: Absence)
11 Appearance of DVT ( 0-2 ) (Absence: 0 Unilateral :1 Bilateral: 
12 Comorbid Disease ( 0-1 ) (1: Presence, 0: Absence)
13 Malignancy ( 0-1 ) (1: Presence, 0: Absence)
14 Diabetes Mellitus ( 0-1 ) (1: Presence, 0: Absence)
15 Hypertension ( 0-1 ) (1: Presence, 0: Absence)
16 Coronary Artery Disease (CAD) ( 0-1 ) (1: Presence, 0: Absence)
17 COPD ( 0-1 ) (1: Presence, 0: Absence)
18 Asthma ( 0-1 ) (1: Presence, 0: Absence)
19 Cerebrovascular Occlusion ( 0-1 ) (1: Presence, 0: Absence)
20 Heart Failure ( 0-1 ) (1: Presence, 0: Absence)
*21 Right Ventricular Involvement ( 0-1 ) (1: Presence, 0: Absence)
Note: *Target variable
DVT: Deep vein thrombosis.
Please cite the following four articles when you use any of these datasets:
1) Huyut, M.T., Velichko, A., Belyaev, M. et al. Identification of right ventricular dysfunction with LogNNet based diagnostic model: A comparative study with supervised ML algorithms. Sci Rep 15, 25262 (2025). https://doi.org/10.1038/s41598-025-00274-1. 
2) Huyut, M.T. et. al., "Detection of Right Ventricular Dysfunction Using LogNNet Neural Network Model Based on Pulmonary Embolism Data Set," Eastern Journal of Medicine , vol.29, no.1, pp.118-128, 2024.
DOI: 10.17632/x55fmmwcyp.1
title: Internal and External Validation Datasets for Use in Detecting Right Ventricular Dysfunction in Acute Pulmonary Embolism

description: This study included patients with acute pulmonary embolism (PE) confirmed by contrast-enhanced multidetector CT. Eligibility required echocardiography and lower-extremity venous Doppler reports. Exclusion criteria were pregnancy, missing imaging, chronic thromboembolic pulmonary hypertension, prior right heart dysfunction, and age &lt;18 years.

Each row in the dataset provides information about a patient's characteristics. The first column shows the gender of the PE patients, the second column shows their ages, and the other columns show various characteristics used in the diagnosis of RVD. The last column shows whether the PE patients were diagnosed with RVD by the physician. This dataset can be used in the artificial intelligence models. It is a suitable dataset for the classification performance of various models.
We established two non-overlapping cohorts:
• A development set of n = 250 patients (103 positive, 147 negative)
• An external validation set of n = 113 patients (36 positive, 77 negative).
Outcome (Target Variable). We defined the target variable as Right Ventricular Involvement (RVD), coded as 1 = Presence, 0 = Absence, based on echocardiographic assessment. 

Table 1. List of features indicating the range of changes in values.
№ Feature name Value range Value description
1 Sex ( 0-1 ) (1:Male, 0:Female)
2 Age ( 22-93 ) -
3 Thrombus Main Pulmonary ( 0-1 ) (1: Presence, 0: Absence)
4 Thrombus Lobe Arteries ( 0-1 ) (1: Presence, 0: Absence)
5 Thrombus Segment ( 0-1 ) (1: Presence, 0: Absence)
6 Thrombus Subsegment ( 0-1 ) (1: Presence, 0: Absence)
7 Thrombus ( 0-1 ) (1: Unilateral, 0: Bilateral)
8 DVT ( 0-1 ) (1: Presence, 0: Absence)
9 DVT Distal Ven ( 0-1 ) (1: Presence, 0: Absence)
10 DVT Proksimal Ven ( 0-1 ) (1: Presence, 0: Absence)
11 Appearance of DVT ( 0-2 ) (Absence: 0 Unilateral :1 Bilateral: 
12 Comorbid Disease ( 0-1 ) (1: Presence, 0: Absence)
13 Malignancy ( 0-1 ) (1: Presence, 0: Absence)
14 Diabetes Mellitus ( 0-1 ) (1: Presence, 0: Absence)
15 Hypertension ( 0-1 ) (1: Presence, 0: Absence)
16 Coronary Artery Disease (CAD) ( 0-1 ) (1: Presence, 0: Absence)
17 COPD ( 0-1 ) (1: Presence, 0: Absence)
18 Asthma ( 0-1 ) (1: Presence, 0: Absence)
19 Cerebrovascular Occlusion ( 0-1 ) (1: Presence, 0: Absence)
20 Heart Failure ( 0-1 ) (1: Presence, 0: Absence)
*21 Right Ventricular Involvement ( 0-1 ) (1: Presence, 0: Absence)
Note: *Target variable
DVT: Deep vein thrombosis.
Please cite the following four articles when you use any of these datasets:
1) Huyut, M.T., Velichko, A., Belyaev, M. et al. Identification of right ventricular dysfunction with LogNNet based diagnostic model: A comparative study with supervised ML algorithms. Sci Rep 15, 25262 (2025). https://doi.org/10.1038/s41598-025-00274-1. 
2) Huyut, M.T. et. al., "Detection of Right Ventricular Dysfunction Using LogNNet Neural Network Model Based on Pulmonary Embolism Data Set," Eastern Journal of Medicine , vol.29, no.1, pp.118-128, 2024.
DOI: 10.17632/5cdnt4t7xz.1
title: Targeting mutant NPM1-expressing AML with T-cell receptor-like antibodies

description: Abstract
Mutant NPM1 protein accumulation is a hallmark of acute myeloid leukemia (AML). Although intracellular proteins are generally inaccessible to antibody-based therapies, proteasomal degradation of mutant NPM1 results in the generation of peptides on the tumor cell surface via major histocompatibility complex (MHC) class I molecules. Enhanced presentation of NPM1 mutant A-derived peptides (NPM1mutA283-291-CLAVEEVSL) on HLA-A*02:01-positive tumor cells distinguishes malignant cells from healthy cells. Here, we report the development of an antibody, 2E2, that specifically targets the NPM1 mutant A peptide bound to HLA-A*02:01. We modified 2E2, including chimeric antibodies and bispecific antibodies. Modified antibodies selectively recognize mutant NPM1-expressing cells and mediate antibody-dependent cellular cytotoxicity (ADCC) in vitro. Moreover, bispecific antibodies derived from 2E2 redirect CD3+ T cells and NK cells to mutant NPM1-expressing cells, suppressing tumor growth both in vitro and in vivo. These findings underscore the potential of NPM1 peptide‒MHC complexes as novel immunotherapeutic targets in AML.

Keywords: TCR-like antibody, Acute myeloid leukemia, Tumor immunotherapy, NPM1, HLA
DOI: 10.15468/dl.cgb2cc
title: Occurrence Download

description: A dataset containing 318990 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "OccurrenceStatus is Present",
 "TaxonKey is Erinaceus europaeus"
 ]
}

 The dataset includes 318990 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050271-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4hvge
title: Occurrence Download

description: A dataset containing 1388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Justicia aurea"
 ]
}

 The dataset includes 1388 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050321-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/cd3gfdpjjv
title: Effects of beavers on terrestrial invertebrate biomass and diversity is dependent on time of the season (Data and Code)

description: This study examined the effects of beaver activity on ground-dwelling invertebrate biomass and diversity across mid-summer and early autumn. Beaver effects were seasonally dependent, with significant interactions between activity and date. Certain invertebrate taxa were linked to beaver-modified habitats, and habitat heterogeneity (NDVI) also varied with beaver presence over time. These results suggest that beavers enhance invertebrate biodiversity by increasing habitat heterogeneity, but are also season dependent.

The datasets and R code correspond to the analyses presented in the article “Effects of beavers on terrestrial invertebrate biomass and diversity is dependent on time of the season”. The provided R scripts include only the statistical analyses reported in the article. For access to additional analyses or additional data, please contact the author directly.
DOI: 10.17632/cd3gfdpjjv.1
title: Effects of beavers on terrestrial invertebrate biomass and diversity is dependent on time of the season (Data and Code)

description: This study examined the effects of beaver activity on ground-dwelling invertebrate biomass and diversity across mid-summer and early autumn. Beaver effects were seasonally dependent, with significant interactions between activity and date. Certain invertebrate taxa were linked to beaver-modified habitats, and habitat heterogeneity (NDVI) also varied with beaver presence over time. These results suggest that beavers enhance invertebrate biodiversity by increasing habitat heterogeneity, but are also season dependent.

The datasets and R code correspond to the analyses presented in the article “Effects of beavers on terrestrial invertebrate biomass and diversity is dependent on time of the season”. The provided R scripts include only the statistical analyses reported in the article. For access to additional analyses or additional data, please contact the author directly.
DOI: 10.17632/kpw3hxh9wx
title: LINF_270012800

description: Amino acid transporter; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kpw3hxh9wx.1
title: LINF_270012800

description: Amino acid transporter; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mkmb6b6gzt
title: LINF_270012700

description: Amino acid transporter aATP11 | AAT23; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mkmb6b6gzt.2
title: LINF_270012700

description: Amino acid transporter aATP11 | AAT23; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jxr5gs2svm
title: LINF_270012200

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jxr5gs2svm.1
title: LINF_270012200

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nnpxbxsgh9
title: LINF_270011800

description: WD40 repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nnpxbxsgh9.1
title: LINF_270011800

description: WD40 repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kdfbcfkx32
title: LINF_270011300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kdfbcfkx32.1
title: LINF_270011300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mv3ffghrmv
title: Digital Economy and Corporate Innovation Resilience

description: Digital Economy and Corporate Innovation Resilience
DOI: 10.17632/mv3ffghrmv.1
title: Digital Economy and Corporate Innovation Resilience

description: Digital Economy and Corporate Innovation Resilience
DOI: 10.17632/zmtj7wry3n
title: Enhancing Research Skills in Chemistry Education via Integrated Project- and Inquiry-Based Learning: A STEM-Focused Supplementary Assessment

description: The study hypothesized that integrating Project-Based Learning (PjBL) and Inquiry-Based Learning (IBL) within a STEM-focused chemistry course would significantly enhance students’ research competencies, including their ability to formulate hypotheses, conduct experiments, analyze data, and communicate scientific results effectively.
The supplementary materials include both quantitative and qualitative tools used to assess students’ research skill development:
Supplementary Table 1: Contains the pre- and post-test questions administered via Google Forms. These questions were designed to measure baseline and post-intervention research competencies, including literature review skills, hypothesis formulation, experiment execution, data processing, report writing, and oral presentation abilities.
Supplementary Table 2: Provides the evaluation rubric used to assess student research projects. Each criterion is scored on a five-point scale, enabling detailed assessment of student performance across key research competencies.
Supplementary Figure 1: Illustrates an example of student research work on caffeine determination using UV spectrophotometry.
Figure 1a: Shows the absorbance spectrum of the caffeine standard solution in the UV range (190–340 nm), which was used to identify the peak wavelength for analysis.
Figure 1b: Displays the calibration curve for the caffeine standard solution recorded at 272 nm, enabling quantitative determination of caffeine content in samples.
Notable Findings and Interpretation:
The data demonstrate improvements in research skills after participating in the integrated PjBL + IBL module. Pre- and post-test comparisons reveal gains in experimental design, statistical analysis, and scientific reporting. The calibration curves and absorbance spectra illustrate students’ correct application of spectrophotometric methods and their ability to interpret experimental data. These supplementary materials can be used by other researchers or educators to:
Understand the assessment methods employed in the study.
Replicate the experiment and assessment process in similar STEM courses.
Interpret quantitative and qualitative results to evaluate the effectiveness of active learning strategies in chemistry education.
DOI: 10.17632/zmtj7wry3n.1
title: Enhancing Research Skills in Chemistry Education via Integrated Project- and Inquiry-Based Learning: A STEM-Focused Supplementary Assessment

description: The study hypothesized that integrating Project-Based Learning (PjBL) and Inquiry-Based Learning (IBL) within a STEM-focused chemistry course would significantly enhance students’ research competencies, including their ability to formulate hypotheses, conduct experiments, analyze data, and communicate scientific results effectively.
The supplementary materials include both quantitative and qualitative tools used to assess students’ research skill development:
Supplementary Table 1: Contains the pre- and post-test questions administered via Google Forms. These questions were designed to measure baseline and post-intervention research competencies, including literature review skills, hypothesis formulation, experiment execution, data processing, report writing, and oral presentation abilities.
Supplementary Table 2: Provides the evaluation rubric used to assess student research projects. Each criterion is scored on a five-point scale, enabling detailed assessment of student performance across key research competencies.
Supplementary Figure 1: Illustrates an example of student research work on caffeine determination using UV spectrophotometry.
Figure 1a: Shows the absorbance spectrum of the caffeine standard solution in the UV range (190–340 nm), which was used to identify the peak wavelength for analysis.
Figure 1b: Displays the calibration curve for the caffeine standard solution recorded at 272 nm, enabling quantitative determination of caffeine content in samples.
Notable Findings and Interpretation:
The data demonstrate improvements in research skills after participating in the integrated PjBL + IBL module. Pre- and post-test comparisons reveal gains in experimental design, statistical analysis, and scientific reporting. The calibration curves and absorbance spectra illustrate students’ correct application of spectrophotometric methods and their ability to interpret experimental data. These supplementary materials can be used by other researchers or educators to:
Understand the assessment methods employed in the study.
Replicate the experiment and assessment process in similar STEM courses.
Interpret quantitative and qualitative results to evaluate the effectiveness of active learning strategies in chemistry education.
DOI: 10.15468/dl.3u3k3p
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus riddelsdellii",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050326-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17084870
title: SkeltyMLOps: Orchestrating Collaborative MLOps Activities

description: This repo includes the data and appendix for our Systematic Literature Review (SLR), so readers can easily reproduce the results from our paper, “SkeltyMLOps: Orchestrating Collaborative MLOps Activities,” presented at MLOps25, the Workshop on Machine Learning Operations co-located with ECAI 2025.

What’s inside:





ECAI Replication Package.xlsx: an Excel workbook with 11 sheets covering search results (initial paper list), backward/forward snowballing, data extraction, data synthesis, and LLM/prompt outputs.




Appendix - References.pdf: the full list of papers included in the SLR.
DOI: 10.5281/zenodo.17094711
title: SkeltyMLOps: Orchestrating Collaborative MLOps Activities

description: This repo includes the data and appendix for our Systematic Literature Review (SLR), so readers can easily reproduce the results from our paper, “SkeltyMLOps: Orchestrating Collaborative MLOps Activities,” presented at MLOps25, the Workshop on Machine Learning Operations co-located with ECAI 2025.

What’s inside:





ECAI Replication Package.xlsx: an Excel workbook with 11 sheets covering search results (initial paper list), backward/forward snowballing, data extraction, data synthesis, and LLM/prompt outputs.




Appendix - References.pdf: the full list of papers included in the SLR.
DOI: 10.5281/zenodo.17094724
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250910q Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250910q Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.17094725
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250910q Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250910q Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.f3nvad
title: Occurrence Download

description: A dataset containing 8300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-104.47617 21.17643,-103.77937 21.17643,-103.77937 22.00276,-104.47617 22.00276,-104.47617 21.17643))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Aves, Mammalia, Amphibia, Squamata, Testudines, Crocodylia)"
 ]
}

 The dataset includes 8300 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050325-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4yfg4v87pf.1
title: Gait-PowerShot-SX430-IS-A background and Filtered Silhouette Images

description: We have collected a new dataset named “Gait-PowerShot-SX430-IS-A”.
This repository provides the silhouette data, which is used to construct the Aggregated Pose Energy Image (APEI) feature. The first three Python code files (available in our GitHub repository) are required to generate these silhouettes and extract the features.

🔗 The Python code can be accessed from our GitHub repository:
https://github.com/rspvsanjay/Aggregated-Pose-Energy-Image/

The original video recordings used to create this dataset are not included here but can be made available upon reasonable request. 
Email to contact: sanjaykrgupta.rs.cse17@itbhu.ac.in
DOI: 10.15468/dl.792rmk
title: Occurrence Download

description: A dataset containing 21299 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Meetnetten.be - Egg counts for butterflies in Flanders, Belgium"
 ]
}

 The dataset includes 21299 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050327-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13020940
title: Peer-to-Peer Boliviano (BOB) Exchange Data