cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14889286
title: RustNet-3D: a high-resolution LiDAR dataset for wheat rust detection

description: RustNet-3D is a high-resolution LiDAR dataset specifically designed for the study of wheat rust infections. This dataset provides detailed 3D point cloud data of wheat plants acquired using the Velodyne VLP-16 LiDAR sensor, enabling researchers to analyze plant morphology and estimate disease severity based on LiDAR intensity values.

Data Collection: the dataset includes 3D scans of both inoculated and non-inoculated wheat plants, captured at various stages of rust infection. The LiDAR sensor was mounted on a mobile platform and synchronized with an odometer system for precise spatial data acquisition. The dataset also integrates ground truth measurements, including biomass, number of ears (NoE), number of grains (NoG), and grain weight (Gw), which were collected at the end of the growing season to serve as reference data for disease severity assessment.

Key features:



High-resolution LiDAR data: captured using a Velodyne VLP-16 sensor, offering a 360° horizontal field of view, a vertical resolution of 2°, and up to 600,000 points per second in dual-return mode.

Spectral information: includes LiDAR intensity values in the near-infrared (NIR) region (903 nm), which are sensitive to variations in chlorophyll content and can be used to assess rust infection severity.

Ground truth measurements: biomass, NoE, NoG, and Gw data were collected for each plant to validate disease impact. This information can be found in the DataRustNet.csv file.

Synchronization with ROS: data acquisition and processing were conducted using ROS Melodic on an Ubuntu 18.04.5 LTS system, ensuring accurate synchronization of LiDAR point clouds with odometry data.

Dataset format: the point cloud data is stored in ROS bag files, preserving raw LiDAR and odometry information for advanced analysis and reconstruction.


Potential applications:



3D plant phenotyping and structural analysis

Automated wheat rust detection and severity estimation

Development of AI models for disease classification and early detection

High-resolution 3D modeling for precision agriculture applications


RustNet-3D is an open-access dataset aimed at supporting researchers in the fields of precision agriculture, plant pathology, and remote sensing. By providing high-fidelity 3D representations of rust-infected and healthy wheat plants, it enables the development of robust computational models for disease detection and yield prediction. The code required to perform all analyses can be found at https://github.com/eapolo/agrolidarwheatrust.git.
DOI: 10.5281/zenodo.13938374
title: Detailed Mapping: Standardizing Heat-Related Diagnoses for Predictive Modeling in Healthcare
DOI: 10.5281/zenodo.13938375
title: Detailed Mapping: Standardizing Heat-Related Diagnoses for Predictive Modeling in Healthcare
DOI: 10.5281/zenodo.13959277
title: Detailed Mapping: Standardizing Heat-Related Diagnoses for Predictive Modeling in Healthcare
DOI: 10.1285/i26108968n11p9
title: Alle origini delle scuole rurali: l'istruzione per tutti. Riflessioni e iniziative di governo nel tardo Settecento
DOI: 10.5281/zenodo.14967860
title: MassIVE-KB v1 30 million PSMs training/validation/test splits

description: The MassIVE-KB data are derived from PSMs used to compile the MassIVE-KB v1 spectral library and consists of approximately 30 million PSMs. The PSMs were obtained by collecting up to the top 100 PSMs for each of the 2,154,269 precursors (as defined by a peptidoform and charge) included in the MassIVE-KB v1 spectral library.

The data are split into peptide-disjoint training, validation, and test sets, consisting of:



Training: 28,508,636 PSMs for 1,496,701 unique peptidoforms.

Validation: 1,000,234 PSMs for 52,379 unique peptidoforms.

Test: 996,027 PSMs for 52,399 unique peptidoforms.


The dataset was originally compiled through the following steps:



On the MassIVE website, go to MassIVE Knowledge Base > Human HCD Spectral Library > All Candidate library spectra > Download.

This will give you a zipped TSV file with the metadata and peptide identifications for all 30 million PSMs.

Using the filename (column "filename") you can then retrieve the corresponding peak files from the MassIVE FTP server (done using a wget script) and extract the desired spectra using their scan number (column "scan").
DOI: 10.5281/zenodo.14967861
title: MassIVE-KB v1 30 million PSMs training/validation/test splits

description: The MassIVE-KB data are derived from PSMs used to compile the MassIVE-KB v1 spectral library and consists of approximately 30 million PSMs. The PSMs were obtained by collecting up to the top 100 PSMs for each of the 2,154,269 precursors (as defined by a peptidoform and charge) included in the MassIVE-KB v1 spectral library.

The data are split into peptide-disjoint training, validation, and test sets, consisting of:



Training: 28,508,636 PSMs for 1,496,701 unique peptidoforms.

Validation: 1,000,234 PSMs for 52,379 unique peptidoforms.

Test: 996,027 PSMs for 52,399 unique peptidoforms.


The dataset was originally compiled through the following steps:



On the MassIVE website, go to MassIVE Knowledge Base > Human HCD Spectral Library > All Candidate library spectra > Download.

This will give you a zipped TSV file with the metadata and peptide identifications for all 30 million PSMs.

Using the filename (column "filename") you can then retrieve the corresponding peak files from the MassIVE FTP server (done using a wget script) and extract the desired spectra using their scan number (column "scan").
DOI: 10.15468/dl.77zdt8
title: Occurrence Download

description: A dataset containing 10709 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insect Specimens of Gunma Insect World"
 ]
}

 The dataset includes 10709 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000092-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10953344
title: Europe's lost landscape-sculptors: Today's potential range of the extinct elephant Palaeoloxodon antiquus
DOI: 10.5281/zenodo.10953345
title: Europe's lost landscape-sculptors: Today's potential range of the extinct elephant Palaeoloxodon antiquus
DOI: 10.1285/i26108968n11p31
title: Le scuole rurali: dalla Legge Casati (1859) fino ai primi anni repubblicani
DOI: 10.1285/i26108968n11p49
title: Educare il popolo: l'esperienza di una scuola rurale toscana di secondo Ottocento
DOI: 10.57680/asep.0576762
title: Bibliografie českého literárního internetu
title: Czech Literary Web Bibliography
title: Bibliografie českého literárního internetu – říjen 2023

description: Databáze obsahuje záznamy z časopisů vycházejících online v pdf formátu a z relevantních webových serverů. Excerpční základna byla vybírána primárně dle zaměření a obsahu daného e-zdroje, které se musely týkat české literatury a literární kultury. Zpracovávány jsou mj. publicistické a literární weby, periodika obsahující původní autorskou tvorbu, online mutace tištěných deníků a časopisů či univerzitní a knihovnické časopisy. Kritériem pro zařazení daného zdroje byla existence jeho archivní verze, primárně na portálu webarchiv.cz, jehož zřizovatelem je Národní knihovna ČR. Uchovávání internetového obsahu se stalo klíčovou otázkou analytického zpracování těchto zdrojů, protože jen tak je možné zajistit dostupnost online obsahů i v případě zániku zpracovávaného webu.
description: The database contains records from journals published online in pdf format and from relevant web servers. The excerpt base was selected primarily according to the focus and content of the e-resource, which had to be related to Czech literature and literary culture. Among others, journalistic and literary websites, periodicals containing original authors' works, online versions of printed journals and magazines or university and library journals were processed. The criterion for inclusion of a given resource was the existence of its archival version, primarily on the webarchiv.cz portal, whose founder is the National Library of the Czech Republic. The preservation of web content has become a key issue in the analytical processing of these resources, as this is the only way to ensure the availability of online content even in the event of the demise of the processed website.
DOI: 10.1285/i26108968n11p67
title: Classe V e VI elementare. Corso popolare ad indirizzo agrario di Montecchio (1922-1936)
DOI: 10.15468/dl.gpuhbx
title: Occurrence Download

description: A dataset containing 3124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "OccurrenceStatus is Present",
 "TaxonKey is Diphasiastrum complanatum (L.) Holub",
 "Year 1970-2000"
 ]
}

 The dataset includes 3124 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000093-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i26108968n11p81
title: Scuole rurali del Salento in età fascista
DOI: 10.17031/67cebeb103d3a
title: CPR Data request - ICES WGZE - 10/03/2025

description: All CPR samples.
From January 1958 to December 2021. 
From 30 to 80 North, and -80 to 20 East.
All taxa  (category 1 and 2) for large zooplankton (148), and small zooplankton (71). See guidelines in the archive.
DOI: 10.1285/i26108968n11p95
title: L'edilizia per le scuole rurali: un percorso per immagini dai fondi documentari e bibliografici del MuSEd
DOI: 10.57680/asep.0576761
title: Současná bibliografie (od roku 1945)
title: Current Bibliography (since 1945)
title: Současná bibliografie (od roku 1945) – říjen 2023

description: Databáze vznikla sloučením dříve samostatných dílčích bibliografických bází, které byly postupně rozšiřovány a převáděny do modernějších formátů a systémů. Aktuálně je obohacována zejména novými záznamy z průběžné excerpce pokrývající soudobou časopiseckou a knižní produkci a zpětně jsou doplňována data pro starší období.
description: This database came about through the merger of what were previously separate sub-databases, which were progressively expanded and converted to more up-to-date formats and systems. It is currently being enhanced to include in particular new entries from ongoing excerption covering contemporary magazine and book output and retrospectively supplemented with data for earlier periods.
DOI: 10.1285/i26108968n11p125
title: Insegnanti e scuole rurali a Narni: dall'Archivio Storico del Comune
DOI: 10.15468/dl.vg47kp
title: Occurrence Download

description: A dataset containing 1329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthocephalus coriaceus (Fabricius, 1777)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1329 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000094-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i26108968n11p137
title: Dalla ricerca di archivio alla rappresentazione scenica
DOI: 10.1285/i26108968n11p141
title: 7 GIORNI DI INCHIOSTRO. Anni '50: storie di vita e di insegnamento delle maestre rurali nel narnese
DOI: 10.15468/dl.hd7fth
title: Occurrence Download

description: A dataset containing 2340 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vipera seoanei Lataste, 1879"
 ]
}

 The dataset includes 2340 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000096-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14998884
title: Dataset related to article "Outcome of Endoscopic Resection of Rectal Neuroendocrine Tumors ¿ 10 mm"

description: This record contains raw data related to article "Outcome of Endoscopic Resection of Rectal Neuroendocrine Tumors ¿ 10 mm"

 

Abstract:

Background and aim: Guidelines suggest endoscopic resection for rectal neuroendocrine tumors (rNETs) < 10 mm, but the most appropriate resection technique is unclear. In real-life clinical practice, the endoscopic removal of unrecognized rNETs can take place with "simple" techniques and without preliminary staging. The aim of the current study is to report our own experience at a referral center for both neuroendocrine neoplasms and endoscopy.

Methods: Retrospective analyses of polypectomies were performed at the Humanitas Research Hospital for rNETs (already diagnosed or previously unrecognized).

Results: A total of 19 patients were included, with a median lesion size of 5 mm (range 3-10 mm). Only five lesions were suspected as NETs before removal and underwent endoscopic ultrasound (EUS) before resection, being removed with advanced endoscopic techniques. Unsuspected rNETs were removed by cold polypectomy in eleven cases, EMR in two, and biopsy forceps in one. When described, the margins were negative in four cases, positive in four (R1), and indeterminate in one. The median follow-up was 40 months. A 10 mm polypoid lesion removed with cold snare polypectomy (G2 R1) needed subsequent surgery. Eighteen patients underwent EUS after a median time of 6.5 months from resection. The EUS identified local recurrence after 14 months in a 7 mm polypoid lesion removed with cold snare polypectomy (G1 R1); the lesion was treated with cap-assisted EMR. For all the other lesions, the follow-up was negative.

Conclusions: When rNETs are improperly removed without prior staging, caution must be exercised. The data from our cohort suggest that even if inappropriate resection had happened, patients may be safely managed with early EUS evaluation.
DOI: 10.5281/zenodo.14998885
title: Dataset related to article "Outcome of Endoscopic Resection of Rectal Neuroendocrine Tumors ¿ 10 mm"

description: This record contains raw data related to article "Outcome of Endoscopic Resection of Rectal Neuroendocrine Tumors ¿ 10 mm"

 

Abstract:

Background and aim: Guidelines suggest endoscopic resection for rectal neuroendocrine tumors (rNETs) < 10 mm, but the most appropriate resection technique is unclear. In real-life clinical practice, the endoscopic removal of unrecognized rNETs can take place with "simple" techniques and without preliminary staging. The aim of the current study is to report our own experience at a referral center for both neuroendocrine neoplasms and endoscopy.

Methods: Retrospective analyses of polypectomies were performed at the Humanitas Research Hospital for rNETs (already diagnosed or previously unrecognized).

Results: A total of 19 patients were included, with a median lesion size of 5 mm (range 3-10 mm). Only five lesions were suspected as NETs before removal and underwent endoscopic ultrasound (EUS) before resection, being removed with advanced endoscopic techniques. Unsuspected rNETs were removed by cold polypectomy in eleven cases, EMR in two, and biopsy forceps in one. When described, the margins were negative in four cases, positive in four (R1), and indeterminate in one. The median follow-up was 40 months. A 10 mm polypoid lesion removed with cold snare polypectomy (G2 R1) needed subsequent surgery. Eighteen patients underwent EUS after a median time of 6.5 months from resection. The EUS identified local recurrence after 14 months in a 7 mm polypoid lesion removed with cold snare polypectomy (G1 R1); the lesion was treated with cap-assisted EMR. For all the other lesions, the follow-up was negative.

Conclusions: When rNETs are improperly removed without prior staging, caution must be exercised. The data from our cohort suggest that even if inappropriate resection had happened, patients may be safely managed with early EUS evaluation.
DOI: 10.15468/dl.r74bka
title: Occurrence Download

description: A dataset containing 10278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "DatasetKey is one of (VectorBase (Bioinformatics Resource for Invertebrate Vectors of Human Pathogens), Naturalis Biodiversity Center (NL) - Diptera)",
 "GbifRegion is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Anopheles funestus Giles, 1900"
 ]
}

 The dataset includes 10278 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000095-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i26108968n11p185
title: Postfazione. Public History e valorizzazione del patrimonio: il dibattito sulle scuole rurali tra Otto e Novecento
DOI: 10.15468/dl.5mt53t
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Macaca thibetana (A.Milne-Edwards, 1870)"
 ]
}

 The dataset includes 179 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000097-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1285/i26108968n11p197
title: Colophon
DOI: 10.5285/62b9e5c5-190a-4137-ad95-3565e99395fe
title: Time-lapse video of tracer percolation experiment in Svalbard seasonal snowpack, Ny-Alesund March 2023

description: This dataset contains a timelapse video of a tracer percolation experiment in the seasonal snowpack near Ny-Alesund, Svalbard, on 31st March 2023. The tracer percolation experiment was carried out by applying a coloured water tracer over a defined area and filmed using a camera and tripod. The video was recorded as part of an experimental field study ("Wet Finderprints") by Dorothea Moser to visualise the progression and retardation of meltwater liquid in near-surface snow.

The project was supported by an Arctic Field Grant through the Norwegian Research Council - Project No. 342165, RiS ID 12132. Dorothea Elisabeth Moser was supported by BAS Cambridge and the NERC C-CLEAR Doctoral Training Programme (grant no. NE/S007164/1).
description: The rain-on-snow percolation experiment used a coloured water tracer of known temperature (12.4 degrees C) and volume (2000mL), which is applied over a defined area (40 cm x 20 cm). Tracer advance within the snowpack is visible based on its blue colour. The duration of tracer application, which can be used to calculate melt flux, was 68 seconds. The evolution of temperature was monitored with five thermometers placed in regular intervals (63cm, 60cm, 55cm, 45cm snow height) at 30-second resolution over a period of 19 minutes. The experiment was concluded when the start of refreezing was evident as decreasing temperature of the top thermometer. When the start of refreezing was evident from the decreasing temperature in the top thermometer.

The video material has been cropped to focus on the spatial extent of the snow pit front and the duration of the experiment. The yellow foldable ruler provides the scale. The timelapse video (1:11 min) captures the full 19-minute experiment duration. The original video has been sped up 16-fold to create the timelapse.
description: Dimensions of snow pit front: horizontal width = 40 cm, average snow depth = 65.5 cm

The video was recorded with the camera of a SAMSUNG Galaxy A52s mobile phone while positioned in the snow pit using a tripod. The video was processed using the Android Samsung Gallery App.
description: Video quality: 720 pixels x 992 pixels (frame width x frame height)

Thermometers were placed at the following regular intervals: 63cm, 60cm, 55cm, 45cm snow height, equalling 2.5cm, 5.5cm, 10.5cm, 15.5cm, 20.5cm below the snow surface).
DOI: 10.15468/dl.wxgmzd
title: Occurrence Download

description: A dataset containing 1659 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Technomyrmex albipes (Smith, 1861)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1659 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000098-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fgbze5
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyprinus carpio Linnaeus, 1758",
 "Year 1995-2025"
 ]
}

 The dataset includes 327 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000099-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14906601
title: Environment-like exposure of free-living stages of Haemonchus contortus to albendazole: the intra- and intergeneration stability of altered expression of UDP-glycosyl transferases and ABC-transporters

description: Anthelmintic drugs are widespread environmental contaminants, but the consequences of their presence in the environment are still poorly understood. It is known that contact of parasitic nematode Haemonchus contortus with traces of anthelmintic drug albendazole (ABZ) altered the expression and activity of several UDP-glycosyl transferases (UGTs) and P-glycoproteins (Pgps, belonging to ABC-transporters), key enzymes in endogenous metabolism as well as in the defence against xenobiotics, including anthelmintics. However, it is not known whether the changes in expression patterns will last during the life cycle and pass to the next generations. In the present study simulating the environmental-like exposure, free-living stages of H. contortus were exposed or unexposed to a sub-lethal dose of ABZ and its transformation products during L3 development. The L3 served for lambs´ infection and H. contortus adults obtaining. The excrements from infected lambs were used to cultivate the second generation of L3, which were again exposed or unexposed to ABZ and its transformation products during development. The expression pattern of UGTs and Pgps was analysed and compared in the first generation of L3, in the adults, and in the second generation of L3. The results showed that ABZ exposition during larvae development altered the expression of several ugt and pgp genes in L3 and adults. The intrageneration stability of ABZ-evoked changes was observed in the case of ugt24b1, ugt368a1, and pgp11 expression. Concerning intergeneration stability, four genes (ugt365a1, ugt26a2, ugt368b1, and pgp13) maintained the altered expression in the second generation. Interestingly, ABZ-induced changes in the expression of some genes became apparent only in the second generation of L3. Taking together, contact of free-living stages of H. contortus with traces of ABZ and its metabolites in the environment evokes changes in the expression of certain UGTs and Pgps, with some of these changes being intra- and inter-generation stable.