cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17980510
title: Test data for nf-updhmm nextflow pipeline

description: nf-UPDhmm Test Data and Reference Files

The dataset provided for the nf-UPDhmm pipeline includes both test VCF files and reference BED files required for preprocessing and execution.

1. Test data – VCF files

VCF files from 1000 Genomes Project. These samples were extracted from the publicly available phased SNV/INDEL VCFs release (https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/).





mother.vcf.gz: HG00404




father.vcf.gz: HG00403




proband_control.vcf.gz: HG00405




proband_heterodisomy.vcf.gz: HG00405 with a simulated heterodisomy event introduced.



Note: To ensure computational efficiency, all VCFs are restricted to this region (chr21:29222885-34430153). This allows the pipeline test to run quickly while preserving the structure of a real trio dataset.

2. Reference files – BEDs

In addition to the test VCFs, we provide BED files that define regions excluded during preprocessing. These are reference files, not test data, but they are required for the correct execution of the nf-UPDhmm pipeline.

The files are organized by reference genome version:

-prefix "hg19"

-prefix "hg38"





centromeres.bed





Centromeric and pericentromeric regions (±2 Mb).




Sources:





hg19: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz




hg38: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/centromeres.txt.gz








segmental_duplications.bed





Annotated segmental duplications.




Sources:





hg19: https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/genomicSuperDups.txt.gz




hg38: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/genomicSuperDups.txt.gz








hla_kir.bed





Highly polymorphic immune-related loci.




Coordinates used:





hg19:





HLA: chr6:28,477,797–33,448,354




KIR: chr19:55,228,188–55,383,188






hg38:





HLA: chr6:28,510,120–33,480,577




KIR: chr19:54,025,634–55,084,318










excluded_regions.bed





A combined file merging all of the above (centromeres, segmental duplications, HLA, and KIR).
description: 3. SFARI BED annotation file (UPDhmm package) 

- SFARI.bed: This BED file contains curated recurrent regions derived from the analysis on SSC cohort, integrated into the UPDhmm workflow to assist with downstream interpretation of detected uniparental disomies events (UPDs).
DOI: 10.15468/dl.58k75b
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus occidentalis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 724 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059122-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25390/caryinstitute.7949168
title: Cary Environmental Monitoring Program Stream Chemistry Data: 1985-2025

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, water pollution and streamwater hydrology. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: please click on the Cite button in the Figshare repository.<br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.<br>
DOI: 10.25390/caryinstitute.7949168.v9
title: Cary Environmental Monitoring Program Stream Chemistry Data: 1985-2025

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, water pollution and streamwater hydrology. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: please click on the Cite button in the Figshare repository.<br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.<br>
DOI: 10.25390/caryinstitute.7949168.v8
title: Cary Environmental Monitoring Program Stream Chemistry Data: 1985-2024

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, water pollution and streamwater hydrology. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: please click on the Cite button in the Figshare repository.<br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.<br>
DOI: 10.17026/ar/zoiqdt
title: PAN-00179116 - iron nail general

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00179116&lt;/p&gt;
description: Modified: 2025-08-29T16:46:26+02:00
DOI: 10.25390/caryinstitute.8120816
title: Cary Environmental Monitoring Program Precipitation Chemistry Event-Based Data: 1984-2025

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, water pollution and streamwater hydrology. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Data Cite button in Figshare.<br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.
DOI: 10.25390/caryinstitute.8120816.v6
title: Cary Environmental Monitoring Program Precipitation Chemistry Event-Based Data: 1984-2025

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, water pollution and streamwater hydrology. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Data Cite button in Figshare.<br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.
DOI: 10.25390/caryinstitute.8120816.v5
title: Cary Environmental Monitoring Program Precipitation Chemistry Event-Based Data: 1984-2024

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, water pollution and streamwater hydrology. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Data Cite button in Figshare.<br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.
DOI: 10.15468/dl.4nscm7
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Fossil, Specimen, Material citation, Material sample, Human Observation, Living Specimen, Occurrence evidence)",
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Taxus wallichiana"
 ]
}

 The dataset includes 81 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059123-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhed8q
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Macomopsis cumana, Macoma cumana, Macoma indifferens, Macoma senegalensis, Macomopsis pellucida, Psammobia cumana, Psammotreta cumana, Tellina costae, Tellina cumana, Tellina cumana alba, Tellina cumana tarantensis, Tellina elliptica aroda, Tellina pellucida, Tellina plebeia)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 61 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059124-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.baw5wr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus baptista"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059125-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6xe2b
title: Occurrence Download

description: A dataset containing 691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus odontocarpa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 691 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059126-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/c7kjyo
title: PAN-00166429 - pinch lead

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00166429&lt;/p&gt;
description: Modified: 2025-11-18T14:20:42+01:00
DOI: 10.7910/dvn/ho7q1u
title: Global updated rangeland ecosystem climate change projections through 2050, using evaluated parameters and CMIP6 climate forecasts, Version 0.1
title: G-Range global ecosystem projections

description: Climate change in rangelands creates uncertainty that hinders the long-term direction of research, land management, agricultural production and policy formulation. The updated rangeland ecosystem projections under climate change use the most recent global climate forecasts (Coupled Model Intercomparison Project CMIP6) with evaluated model parameters for the G-Range global rangeland simulation model to project how rangeland ecosystems may change through 2050. The spatial dataset produced includes several fundamental attributes of rangeland ecosystems, specifically net primary productivity, soil carbon, cover of grass, shrubs, trees and bare soil, and root:shoot ratio on a decadal basis. G-Range was driven by climate inputs produced using MarkSimGCM, specifically CMIP6 from 2001 to 2050, and historical data from 2001 to 2020. These outputs are used as inputs to other models and analyses, or for national to global scale estimates of rangeland ecosystem status, structure and function under climate change, with significant implications for research, land management, agricultural production and policy formulation and implementation.
description: A folder is provided for each simulation, with either historical climate data (historical_2001_2014) or the SSP (ssp126_2015_2050 and ssp585_2015_2050) and the inclusive years of the simulation indicated in the name of the folder, containing the main simulation parameter file (Sim_Parm.grg), initialization state file, and binary G-Range output files (.gof). The 'Export' folder contains 'Exporter' and 'F-Export' folders, which respectively contain a C++ (Export_File.exe) exporter, and a Fortran (F_Exporter.exe) exporter, which both perform the same function of extracting a series of concatenated maps from the binary .gof G-Range output files, and saving these maps as grid ASCII (.asc) files. In each of the 'Exporter' and 'F-Export' folders, a batch file named Backup_Export.bat provides the format for input; the last digit in each line refers to the number of 'layers' the variable has, which here are: 3 (facet cover), 1 (root to shoot ratio and soil total carbon), and 6 (total net primary production limited by N). The 'Layers' folder contains global maps used in the G-Range model for all simulations, and the 'Parameters' folder contains parameter files used in all simulations.
DOI: 10.5281/zenodo.17839768
title: Entity Linking with Wikidata: A Systematic Literature Review - Results Table

description: This dataset contains the research results for the article "Entity Linking with Wikidata: A Systematic Literature Review" by Scharpf et al.

The article provides a comprehensive systematic review of the literature on entity linking using Wikidata as the grounding knowledge base. Our review extends the scope of previous studies from two to eight dimensions of entity linking, which we classify into the following categories: definitions, tasks, types, domains, approaches, datasets, applications, and challenges. We find that datasets primarily address question-answering and news domains but underutilize Wikidata's capabilities for hyper-relations, multilingualism, and time dependence. The research gaps we identify include the need for more robust datasets, hybrid methods combining rule-based and learning-based approaches, and improved handling of ambiguity, sparse entity types, data noise, and knowledge graph evolution.
DOI: 10.5281/zenodo.17839767
title: Entity Linking with Wikidata: A Systematic Literature Review - Results Table

description: This dataset contains the research results for the article "Entity Linking with Wikidata: A Systematic Literature Review" by Scharpf et al.

The article provides a comprehensive systematic review of the literature on entity linking using Wikidata as the grounding knowledge base. Our review extends the scope of previous studies from two to eight dimensions of entity linking, which we classify into the following categories: definitions, tasks, types, domains, approaches, datasets, applications, and challenges. We find that datasets primarily address question-answering and news domains but underutilize Wikidata's capabilities for hyper-relations, multilingualism, and time dependence. The research gaps we identify include the need for more robust datasets, hybrid methods combining rule-based and learning-based approaches, and improved handling of ambiguity, sparse entity types, data noise, and knowledge graph evolution.
DOI: 10.7910/dvn/vxaace
title: Replication Data for: How Experience Increases the Legitimacy of Citizen Deliberation: Evidence from Honduras

description: Deliberative processes are often proposed to strengthen democracy, yet we know relatively little about how citizens evaluate their legitimacy. With a focus on deliberative citizens’ assemblies (or deliberative mini-publics), an increasingly common institutional form, I argue that experience with deliberation increases legitimacy by enhancing perceptions of process fairness and shifting views about citizens’ capacity to deliberate. I test this claim in Honduras with an experiment that pairs real deliberation and survey-experimental measures of legitimacy. Those without deliberative experience view deliberative processes as less legitimate than the status quo. Experience substantially boosts legitimacy, even among those who disagreed with the policy outcome—a strong test of legitimacy. The results advance research on deliberative democracy, democratic innovations, and citizen engagement, and carry implications for efforts to scale deliberative projects.
DOI: 10.17026/dans-ztc-daep
title: PAN-00095306 - terra sigillata plate type Drag. 32 / Ch. 303

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00095306&lt;/p&gt;
description: Modified: 2025-09-15T12:02:45+02:00
DOI: 10.15468/dl.awhbsv
title: Occurrence Download

description: A dataset containing 305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Megangulus bodegensis, Tellina bodegensis, Tellina santarosae, Tellina sulcatina)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 305 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059128-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ft8p6r
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus bernhardi"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059129-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/um934e
title: Replication Data for: The ESG Premium Puzzle: Explaining Return Patterns in Shariah-Compliant and Conventional Stocks

description: This dataset includes annual financial metrics and ESG scores, along with monthly returns and market capitalization data for U.S. listed stocks, covering the period from 2011 to 2024.
DOI: 10.15468/dl.fmqzjf
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Passiflora mooreana"
 ]
}

 The dataset includes 327 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059130-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/udelyq
title: Replication Data for: Wildfires and agricultural worker injury

description: This replication package provides the code and documentation needed to reproduce the empirical results in “Wildfires and Agricultural Worker Injury.” It does not redistribute restricted data; instead, it includes instructions for obtaining and processing the original data from their respective sources.
DOI: 10.15468/dl.4ukthh
title: Occurrence Download

description: A dataset containing 14052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus ovata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14052 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059131-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/nimbus-7/czcs/l3b/chl/2022.0
title: Nimbus-7 CZCS Level-3 Global Binned Chlorophyll (CHL) Data, version 2022.0
DOI: 10.7910/dvn/sdvmoj
title: Replication Data for: The Alliance is talking: Introducing the NATO Secretary General Document (NATO-SGD) corpus

description: Replication for Knapp (2025) : The Alliance is talking: Introducing the NATO Secretary General Document (NATO-SGD) corpus
DOI: 10.5067/nimbus-7/czcs/l1a/data/2
title: Nimbus-7 CZCS Level-1A Data, version 2
DOI: 10.5067/nimbus-7/czcs/l2/oc/2022.0
title: Nimbus-7 CZCS Level-2 Regional Ocean Color (OC) Data, version 2022.0
DOI: 10.5067/nimbus-7/czcs/l3b/kd/2022.0
title: Nimbus-7 CZCS Level-3 Global Binned Diffuse Attenuation Coefficient for Downwelling Irradiance (KD) Data, version 2022.0
DOI: 10.5281/zenodo.17980580
title: LINF_300020400

description: Rad17/Rad24-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.5067/nimbus-7/czcs/l3b/rrs/2022.0
title: Nimbus-7 CZCS Level-3 Global Binned Remote-Sensing Reflectance (RRS) Data, version 2022.0
DOI: 10.5281/zenodo.17980579
title: LINF_300020400

description: Rad17/Rad24-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.5067/nimbus-7/czcs/l3m/chl/2022.0
title: Nimbus-7 CZCS Level-3 Global Mapped Chlorophyll (CHL) Data, version 2022.0
DOI: 10.5067/nimbus-7/czcs/l3m/kd/2022.0
title: Nimbus-7 CZCS Level-3 Global Mapped Diffuse Attenuation Coefficient for Downwelling Irradiance (KD) Data, version 2022.0
DOI: 10.5067/nimbus-7/czcs/l3m/rrs/2022.0
title: Nimbus-7 CZCS Level-3 Global Mapped Remote-Sensing Reflectance (RRS) Data, version 2022.0
DOI: 10.5067/adeos-i/octs/l1a/data/2
title: ADEOS-I OCTS Level-1A Data, version 2
DOI: 10.17026/ar/kh7c2k
title: PAN-00154545 - terra sigillata kom type Drag. 37 (EG)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00154545&lt;/p&gt;
description: Modified: 2025-10-22T16:43:08+02:00