cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14725531
title: Optimized Analytical Workflow for Single-Nucleus Transcriptomics  in Main Metabolic Tissues

description: Single-nucleus RNA sequencing (snRNA-seq) has emerged as a powerful approach for studying cellular heterogeneity in metabolic tissues. However, snRNA-seq analysis remains challenging due to low gene expression and data complexity. Here, we introduce an optimized analytical workflow for snRNA-seq data from 67 samples across four main metabolic tissues white adipose tissue, hypothalamus, muscle and liver. We emphasized the importance of key steps including ambient RNA removal, doublet identification, normalization and data integration to ensure accurate downstream analysis. This workflow offers a valuable resource for researchers in metabolism, facilitating deeper insights into cellular diversity and metabolic function through rigorous snRNA-seq analysis.
DOI: 10.6084/m9.figshare.27153441.v2
title: On the Impact of Requirements Smells in Prompts: The Case of Automated Traceability

description: <pre>This is the dataset for the paper <i>On the Impact of Requirements Smells in Prompts: The Case of Automated Traceability</i>. See the <i>README.md</i> for more information.</pre><br>
DOI: 10.6084/m9.figshare.28053293
title: Tepiditoga

description: Supplementary material for chapter Tepiditoga in Bergey's manual.
DOI: 10.15468/dl.arynce
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silurus glanis Linnaeus, 1758",
 "Country is Spain",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 63 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002643-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34808/7m3m-fs37
title: Area covered by dominant tree species in the State Forests divided into stand age classes over the years 2014-2018
DOI: 10.15468/dl.8pnbd8
title: Occurrence Download

description: A dataset containing 276 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Eriosyce rodentiophila F.Ritter",
 "Year 2010-2020"
 ]
}

 The dataset includes 276 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002644-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28053194
title: Petrotoga

description: Supplementary materials for chapter Petrotoga in Berge'ys Manual.
DOI: 10.6084/m9.figshare.28263791
title: De novo transcriptome assembly and annotation of the Antarctic hair grass <i>Deschampsia antarctica</i>

description: Antarctic hair grass (<i>Deschampsia antarctica</i>), one of only two native flowering plants in Antarctica, exhibits remarkable cold tolerance. To elucidate the molecular mechanisms underlying this exceptional resistance of <i>D. antarctica</i> to low temperatures, we constructed the de novo transcriptome reference using sequencing data from RNA samples during cold acclimation and subsequent deacclimation. Total RNA was isolated from leaves of <i>D. antarctica</i> using the RNeasy Plant Mini Kit (Qiagen, Valencia, CA, USA). A total of 3 μg RNA (1000 ng/μL) from each sample was used to construct libraries with the TruSeq mRNA Library Kit (Illumina, San Diego, CA, USA). Sequencing was performed on a HiSeq 2000 system (PE, 2 × 101) (Illumina). Raw reads have been deposited and linked to NCBI BioProject PRJNA1098583. For pre-processing of raw data, Trimmomatic v0.3.9 was used to remove low-quality reads and adaptor sequences from the raw data. An additional decontamination process was performed using the BBduk v38.87 with viral, rRNA, human and bacteria RefSeq databases. For de novo assembly, rnaSPAdes v3.15.0 was used with the `--hard_filtered_transcripts` option to generate hard-filtered transcripts. The resulting dataset was then clustered using CD-HIT-EST v4.8.1 with 90% identity and a length cutoff of &gt; 300 bp. For selecting expressed genes through NGS mapping, we set thresholds of TPM ≥ 0.2 and mapping counts &gt; 0. To assess the completeness of our transcriptome assembly, we conducted a BUSCO v5.0 analysis using the embryophyte_odb10 database. To infer the functions of the generated unigene set, similarity analysis was performed using the DIAMOND program, which executed BLASTX analysis on the nucleotide sequences of the unigenes against the NCBI non-redundant, Araport11 and Oryza sativa (Os_IRGSP_1.0_pep_all) protein databases with an e-value cutoff of 1e-5. Protein domain analysis was conducted using InterProScan to investigate conserved domains with protein sequences. KEGG pathway analysis was carried out using the KAAS web-tool, with unigene sequences as input and employing the SBH method.
DOI: 10.6084/m9.figshare.28053116
title: Marinitoga

description: Supplementary materials for Marinitoga chapter in Bergey's manual.
DOI: 10.6084/m9.figshare.27960813
title: Chapter Kosmotogales

description: Supplementary files for the chapter Kosmotogales in the Bergey's Manual.
DOI: 10.6084/m9.figshare.27960813.v1
title: Chapter Kosmotogales

description: Supplementary files for the chapter Kosmotogales in the Bergey's Manual.
DOI: 10.6084/m9.figshare.27960729
title: Chapter Petrotogales

description: Supplementary datas for Petrotogales chapter
DOI: 10.15468/dl.cfbb6a
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Eriosyce rodentiophila F.Ritter",
 "Year 2010-2016"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002645-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27960189
title: Chapter Thermotogales

description: Supplementary datas for the chapter Thermotogales in Bergey's Manual.
DOI: 10.6084/m9.figshare.27960189.v1
title: Chapter Thermotogales

description: Supplementary datas for the chapter Thermotogales in Bergey's Manual.
DOI: 10.25403/upresearchdata.28263386
title: Well-being experiences of family members during the COVID-19 pandemic

description: The purpose of the study was to explore the relational well-being experiences within families in order to have a better understanding of ways in which relational patterns contributed to the well-being of family members during the COVID-19 pandemic. The population comprised families with one biological parent and their child (ages 12-18) who resided in Newcastle, KwaZulu Natal province. A purposive sampling was used to recruit five families from different ethnic backgrounds in Newcastle, KwaZulu-Natal. Semi-structured individual interviews were conducted to collect data, and the data was analysed using thematic analysis. The findings report that families underwent significant changes and adjustments within their households, occupations, and relationships during the COVID-19 pandemic. These changes included family adjustments, such as living arrangements, navigating roles, living a healthy lifestyle, occupational experiences, financial challenges, relational patterns, relational dynamics, and intrapersonal experiences. Despite the challenges expressed, findings from this study suggest that pandemics such as COVID-19 can cause families to create relational patterns that contribute positively and negatively to family relational well-being. These findings show that family functions as a system and that the relational interactional patterns formed among members of a family are significant to the well-being of individuals and act as a protective factor in times of crisis. How families relate to one another in adverse situations, and the relational patterns they create, largely determines the outcomes of their relationships. It is therefore recommended that further research should be directed towards related themes that increase knowledge concerning the relational well-being experiences of families in South Africa, particularly during crises.
DOI: 10.25403/upresearchdata.28263386.v1
title: Well-being experiences of family members during the COVID-19 pandemic

description: The purpose of the study was to explore the relational well-being experiences within families in order to have a better understanding of ways in which relational patterns contributed to the well-being of family members during the COVID-19 pandemic. The population comprised families with one biological parent and their child (ages 12-18) who resided in Newcastle, KwaZulu Natal province. A purposive sampling was used to recruit five families from different ethnic backgrounds in Newcastle, KwaZulu-Natal. Semi-structured individual interviews were conducted to collect data, and the data was analysed using thematic analysis. The findings report that families underwent significant changes and adjustments within their households, occupations, and relationships during the COVID-19 pandemic. These changes included family adjustments, such as living arrangements, navigating roles, living a healthy lifestyle, occupational experiences, financial challenges, relational patterns, relational dynamics, and intrapersonal experiences. Despite the challenges expressed, findings from this study suggest that pandemics such as COVID-19 can cause families to create relational patterns that contribute positively and negatively to family relational well-being. These findings show that family functions as a system and that the relational interactional patterns formed among members of a family are significant to the well-being of individuals and act as a protective factor in times of crisis. How families relate to one another in adverse situations, and the relational patterns they create, largely determines the outcomes of their relationships. It is therefore recommended that further research should be directed towards related themes that increase knowledge concerning the relational well-being experiences of families in South Africa, particularly during crises.
DOI: 10.34740/kaggle/dsv/10558932
title: Mycobacterial Lung Disease CT Dataset
DOI: 10.17044/scilifelab.25653297
title: ChimeraX sessions for the paper "AlphaFold Unmasked: integration of experiments and predictions in multimeric complexes"

description: These datasets are sessions of the software chimeraX, used for visualisation and analysis of molecular structures and cryo-EM densities. Here, we show all the molecular predictions obtained using AF_unmasked and used for the analysis of cryo-EM structures of large complexes.
Reference paper is "AlphaFold Unmasked: integration of experiments and predictions in multimeric complexes", Mirabello et al, Nature Communication, 2024
DOI: 10.6084/m9.figshare.28263743
title: Study Characteristics from Included Studies

description: Supplementary data for manuscript titled "The comparison of totally ultrasound-guided versus fluoroscopy-guided shockwave lithotripsy in renal stone treatment: a systematic review and meta-analysis." This document consists of study characteristics from included articles.
DOI: 10.15468/dl.e3dd27
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Copiapoa echinoides (Lem. ex Salm-Dyck) Britton & Rose"
 ]
}

 The dataset includes 220 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002647-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xufxse
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Eriosyce rodentiophila F.Ritter",
 "Year 2000-2016"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002648-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nwrf6
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sinanodonta woodiana (I.Lea, 1834)",
 "Country is Spain",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 159 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002651-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4gy3b
title: Occurrence Download

description: A dataset containing 13052 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus pardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 13052 records from 404 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002650-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14549395
title: Spatial Single-cell Analysis of Human Cortical Layer and Area Specification
DOI: 10.5281/zenodo.14549396
title: Spatial Single-cell Analysis of Human Cortical Layer and Area Specification
DOI: 10.15468/dl.4dtaaj
title: Occurrence Download

description: A dataset containing 14098 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplodus sargus (Linnaeus, 1758)"
 ]
}

 The dataset includes 14098 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002652-250121130708018/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pf9y2
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psidium cattleianum var. cattleianum"
 ]
}

 The dataset includes 132 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209153-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkxfxp
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen, Material sample)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Elops smithi McBride, Rocha, Ruiz-Carus & Bowen, 2010"
 ]
}

 The dataset includes 20 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037370-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4awu4f
title: Occurrence Download

description: A dataset containing 3285028 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-107.11026 21.56251,-90.96796 21.56251,-90.96796 28.01667,-107.11026 28.01667,-107.11026 21.56251))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3285028 records from 1381 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037365-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkrhuj
title: Occurrence Download

description: A dataset containing 24196 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-116.6 31.8,-116.3 31.8,-116.3 32,-116.6 32,-116.6 31.8))"
 ]
}

 The dataset includes 24196 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209179-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yq7kj
title: Occurrence Download

description: A dataset containing 2681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Barlia robertiana (Loisel.) Greuter"
 ]
}

 The dataset includes 2681 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017758-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6znjy5
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Macaca fascicularis (Raffles, 1821)",
 "Year 1970-2000"
 ]
}

 The dataset includes 138 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209174-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2djpe
title: Occurrence Download

description: A dataset containing 1062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus vaginiflorus (Torr. ex A.Gray) Alph.Wood",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (United States of America, Canada)"
 ]
}

 The dataset includes 1062 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271685-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/33p-9dh-1xs
title: Centrolobium robustum (Vell.) Mart. ex Benth.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/ewa-kca-6x0
title: Stipa bufensis F. M. Vázquez, H. Scholz & Sonnentag

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/15b-2x6-3y5
title: Gaultheria erecta Vent.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/3v9-zy1-000
title: Krascheninnikovia ceratoides (L.) Gueldenst.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/6xy-a08-75d
title: Cardamine glauca Spreng. ex DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/kfe-e1h-7bf
title: Ceratonia siliqua L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/nzr-s06-a4a
title: Guarea macrophylla subsp. tuberculata (Vell.) T. D. Penn.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/wnl-wa1-tdd
title: Heliotropium sinuatum (Miers) I. M. Johnst.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/aq5-97z-bwd
title: Astragalus austriacus Jacq.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/gd0-v7g-ce2
title: Draba parnassica Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/gdy-7vd-8zm
title: Poa bulbosa L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/290-lgr-y7t
title: Festuca L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/khz-w4n-rz7
title: Combretum patelliforme Engl.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/q6y-bev-llp
title: Fumaria densiflora DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/98e-3lx-1s9
title: Actinostemon schomburgkii (Klotzsch) Hochr.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/q2y-24y-rhw
title: Eremaea pauciflora (Endl.) Druce

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rbt-qcl-lta
title: Polygonum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/3ll-hak-jnm
title: Galium boissierianum (Steud.) Ehrend. & Krendl

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/gkw-pll-557
title: Euphrasia officinalis subsp. rostkoviana (Hayne) F. Towns.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.13140/rg.2.2.22834.76482
title: Mi negocio como líder en la venta directa
DOI: 10.3535/cz8-l7q-9ah
title: Bromidium trisetoides (Steud.) Rúgolo

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/h5a-tb9-hgq
title: Gaultheria acuminata Schltdl. & Cham.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/waa-3wk-fdb
title: Gaultheria erecta Vent.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/z4v-zbt-tpb
title: Guarea macrophylla Vahl

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/hk9-f30-096
title: Klasea flavescens (L.) Holub

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/yd0-1h9-w55
title: Carapa guianensis Aubl.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/yxm-eft-bvk
title: Vitex zanzibarensis Vatke

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.13140/rg.2.2.10933.42725
title: NEW MULTI PHYSICS DATA COORD
DOI: 10.13140/rg.2.2.21838.61764
title: test file
DOI: 10.3535/5d8-23g-230
title: Papaver hybridum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/a37-5l1-lh3
title: Cedrela odorata L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/lg6-x0j-tr7
title: Guarea guidonia (L.) Sleumer

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/76v-gjm-c5s
title: Gaultheria erecta Vent.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/e9g-889-xgl
title: Gaultheria foliolosa Benth.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/re7-15j-qtf
title: Euphrasia salisburgensis Funck ex Hoppe

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.13140/rg.2.2.20265.75360
title: Land use and land cover map of Shingla river basin for the year 1975 using Landsat 1 (MSS) satellite data.
DOI: 10.3535/p9r-jfj-h27
title: Festuca L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rcz-8vg-hy6
title: Geranium columbinum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/tx0-l75-rfy
title: Draba discoidea Wedd.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/63c-l1q-z0l
title: Braya alpina Sternb. & Hoppe

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.