cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7955891.v1
title: Squamata subset positive selection analyses

description: Data used for positive selection analyses across squamata species subset. Taxa include Anolis carolinensis, Varanus komodoensis, Python molurus bivitattus, and Gekko japonicus. This includes protein sequence alignments, coding sequence alignments, and the species tree.
DOI: 10.6084/m9.figshare.7955960.v2
title: Results and graphs of a questionnaire based survey on effects of metal detecting among British Armed Forces veterans with PTSD and/or other mental health challenges.

description: Sorted and coded results and graphs of a questionnaire based survey on self-assessment of the effects of metal detecting among British Armed Forces veterans with PTSD (Post Traumatic Stress Disorder) and/or other diagnosed or undiagnosed psychological challenges.
DOI: 10.5258/soton/d1520
title: Dataset for: Effect of serrated trailing edges on aerofoil tonal noise

description: The present dataset contains all processed and raw data needed to generate the figures in the associated paper "Effect of serrated trailing edges on aerofoil tonal noise". It features .dat ASCII files, .plt and .szplt binary files which need to be open using Tecplot 360 software. Each file contained in the dataset is titled with the corresponding figure number followed by a short description of the content.
DOI: 10.6084/m9.figshare.7955864
title: Supplementary Figure 5 and 6 Fractal parameter sweep and dimension analysis

description: All images and raw data files for the fractal parameter sweep used to make supplemental figures 5 and 6. README in folder.
DOI: 10.6084/m9.figshare.7955867
title: ITS+LSU consensus tree of Helotiales

description: This is the consensus tree resulting from Maximum Likelihood inference of the ITS+LSU sequence dataset of Helotiales carried out using IQ-tree under partitioned models (GTR+I+G for ITS, TIM3+I+G for LSU) and ultrafast bootstrapping with 1000 replicates. <br>--<i><br></i><i>Annabella australiensis</i> gen. & sp. nov. (Helotiales, Cordieritidaceae) from South Australian mangroves Authors: Sally C. Fryar<sup>1</sup>, Danny Haelewaters<sup>2,3</sup> and David E.A. Catcheside<sup>1</sup><br> <sup>1</sup>College of Science and Engineering, Flinders University, G.P.O. Box 2100, Adelaide SA 5001, Australia <sup>2</sup>Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, Indiana 47907, USA <sup>3</sup>Faculty of Science, University of South Bohemia, Branišovská 31, 37005, České Budějovice, Czech Republic <b>Abstract</b> A new genus of helotialean fungi, <i>Annabella</i> gen. nov. (Cordieritidaceae), is described to accommodate <i>Annabella australiensis </i>sp. nov. This species was collected on attached decaying wood of <i>Avicennia marina</i>, a common mangrove species found in protected waters of southern Australia. <i>Annabella</i> is distinctive among Cordieritidaceae in having relatively small perithecioid, hyaline to yellowish apothecia and by the absence of an ionomidotic reaction. The apothecial shape and size of <i>Annabella</i> is most similar to <i>Skyttea</i>. The molecular phylogenetic analysis of a concatenated dataset of three ribosomal nuclear loci confirms the placement of <i>Annabella</i> within Cordieritidaceae, as a sister clade to <i>Skyttea</i>.<br>
DOI: 10.6084/m9.figshare.7955885.v1
title: Supplementary Figure 24 Helium ion microscopy comparison of fractal assembly and globular assembly

description: <b>Helium ion microscopy comparison of fractal assembly and globular assembly.</b> HIM Images depict fractal-like assembly with 3 uM AtzAM1 and 2 uM AtzCM1 final concentrations (<b>A </b>to <b>D</b>), while the 3 uM AtzAM1-ExtendedLinker and 2 uM AtzCM1-ExtendedLinker final concentrations show both large and small globular shape proteins on the silicon surface (<b>E</b> to <b>H</b>).
DOI: 10.6084/m9.figshare.7955960.v4
title: Results and graphs of a questionnaire based survey on effects of metal detecting among British Armed Forces veterans with PTSD and/or other mental health challenges.

description: Sorted results and graphs of a questionnaire based survey on self-assessment of the effects of metal detecting among British Armed Forces veterans with PTSD (Post Traumatic Stress Disorder) and/or other diagnosed or undiagnosed psychological challenges.
DOI: 10.6084/m9.figshare.7955855
title: ITS+LSU sequence dataset of Helotiales

description: This is a crude aligned and concatenated ITS+LSU rDNA dataset of Helotiales. Taxonomic sampling covers 25 families (Arachnopezizaceae, Calloriaceae, Cenangiaceae, Chaetomellaceae, Chlorociboriaceae, Cordieritidaceae, Dermateaceae, Drepanopezizaceae, Gelatinodiscaceae, Godroniaceae, Helotiaceae, Heterosphaeriaceae, Hyaloscyphaceae, Lachnaceae, Leptodontidiaceae, Loramycetaceae, Mitrulaceae, Mollisiaceae, Pezizellaceae, Ploettnerulaceae, Roesleriaceae, Rutstroemiaceae, Sclerotiniaceae, Vibrisseaceae) and a number of taxa without clear affinities.<br>--<br> <i>Annabella australiensis</i> gen. & sp. nov. (Helotiales, Cordieritidaceae) from South Australian mangroves Authors: Sally C. Fryar<sup>1</sup>, Danny Haelewaters<sup>2,3</sup> and David E.A. Catcheside<sup>1</sup><br> <sup>1</sup>College of Science and Engineering, Flinders University, G.P.O. Box 2100, Adelaide SA 5001, Australia <sup>2</sup>Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, Indiana 47907, USA <sup>3</sup>Faculty of Science, University of South Bohemia, Branišovská 31, 37005, České Budějovice, Czech Republic <b>Abstract:</b> A new genus of helotialean fungi, <i>Annabella</i> gen. nov. (Cordieritidaceae), is described to accommodate <i>Annabella australiensis </i>sp. nov. This species was collected on attached decaying wood of <i>Avicennia marina</i>, a common mangrove species found in protected waters of southern Australia. <i>Annabella</i> is distinctive among Cordieritidaceae in having relatively small perithecioid, hyaline to yellowish apothecia and by the absence of an ionomidotic reaction. The apothecial shape and size of <i>Annabella</i> is most similar to <i>Skyttea</i>. The molecular phylogenetic analysis of a concatenated dataset of three ribosomal nuclear loci confirms the placement of <i>Annabella</i> within Cordieritidaceae, as a sister clade to <i>Skyttea</i>. <br>
DOI: 10.6084/m9.figshare.7955861
title: Supplementary Figure 23 Helium ion microscopy (HIM) buffer and non-phosphorylated controls preclude salt precipitation

description: <b> Helium ion microscopy (HIM) buffer and non-phosphorylated controls preclude salt precipitation. </b>In order to determine that our proteins were forming fractal-like patterns and it was not salt inducing the patterns, a buffer and non-phosphorylated proteins sample controls were used to preclude salt precipitation. (<b>A</b>) Usual HIM square salt crystals on a glass surface. (<b>B</b>) Deposited HNG buffer (50 mM Hepes, 100 mM NaCl, 5% glycerol, pH.7.4, buffer proteins are stored in) on silicon wafer shows no structures on the surface. (<b>C</b>) 3 µM non-pY-AtzAM1 and 2 µM AtzCM1 control shows no fractal-like structures. (<b>D</b>) 3 µM non-pY-AtzAM1 and 1 µM AtzCM1 show no fractal-like structures. All controls demonstrate that fractal structures are formed by phosphorylated protein components.
DOI: 10.6084/m9.figshare.7955855.v1
title: ITS+LSU sequence dataset of Helotiales

description: This is a crude aligned and concatenated ITS+LSU rDNA dataset of Helotiales. Taxonomic sampling covers 25 families (Arachnopezizaceae, Calloriaceae, Cenangiaceae, Chaetomellaceae, Chlorociboriaceae, Cordieritidaceae, Dermateaceae, Drepanopezizaceae, Gelatinodiscaceae, Godroniaceae, Helotiaceae, Heterosphaeriaceae, Hyaloscyphaceae, Lachnaceae, Leptodontidiaceae, Loramycetaceae, Mitrulaceae, Mollisiaceae, Pezizellaceae, Ploettnerulaceae, Roesleriaceae, Rutstroemiaceae, Sclerotiniaceae, Vibrisseaceae) and a number of taxa without clear affinities.<br>--<br> <i>Annabella australiensis</i> gen. & sp. nov. (Helotiales, Cordieritidaceae) from South Australian mangroves Authors: Sally C. Fryar<sup>1</sup>, Danny Haelewaters<sup>2,3</sup> and David E.A. Catcheside<sup>1</sup><br> <sup>1</sup>College of Science and Engineering, Flinders University, G.P.O. Box 2100, Adelaide SA 5001, Australia <sup>2</sup>Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, Indiana 47907, USA <sup>3</sup>Faculty of Science, University of South Bohemia, Branišovská 31, 37005, České Budějovice, Czech Republic <b>Abstract:</b> A new genus of helotialean fungi, <i>Annabella</i> gen. nov. (Cordieritidaceae), is described to accommodate <i>Annabella australiensis </i>sp. nov. This species was collected on attached decaying wood of <i>Avicennia marina</i>, a common mangrove species found in protected waters of southern Australia. <i>Annabella</i> is distinctive among Cordieritidaceae in having relatively small perithecioid, hyaline to yellowish apothecia and by the absence of an ionomidotic reaction. The apothecial shape and size of <i>Annabella</i> is most similar to <i>Skyttea</i>. The molecular phylogenetic analysis of a concatenated dataset of three ribosomal nuclear loci confirms the placement of <i>Annabella</i> within Cordieritidaceae, as a sister clade to <i>Skyttea</i>. <br>
DOI: 10.6084/m9.figshare.7955867.v1
title: ITS+LSU consensus tree of Helotiales

description: This is the consensus tree resulting from Maximum Likelihood inference of the ITS+LSU sequence dataset of Helotiales carried out using IQ-tree under partitioned models (GTR+I+G for ITS, TIM3+I+G for LSU) and ultrafast bootstrapping with 1000 replicates. <br>--<i><br></i><i>Annabella australiensis</i> gen. & sp. nov. (Helotiales, Cordieritidaceae) from South Australian mangroves Authors: Sally C. Fryar<sup>1</sup>, Danny Haelewaters<sup>2,3</sup> and David E.A. Catcheside<sup>1</sup><br> <sup>1</sup>College of Science and Engineering, Flinders University, G.P.O. Box 2100, Adelaide SA 5001, Australia <sup>2</sup>Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, Indiana 47907, USA <sup>3</sup>Faculty of Science, University of South Bohemia, Branišovská 31, 37005, České Budějovice, Czech Republic <b>Abstract</b> A new genus of helotialean fungi, <i>Annabella</i> gen. nov. (Cordieritidaceae), is described to accommodate <i>Annabella australiensis </i>sp. nov. This species was collected on attached decaying wood of <i>Avicennia marina</i>, a common mangrove species found in protected waters of southern Australia. <i>Annabella</i> is distinctive among Cordieritidaceae in having relatively small perithecioid, hyaline to yellowish apothecia and by the absence of an ionomidotic reaction. The apothecial shape and size of <i>Annabella</i> is most similar to <i>Skyttea</i>. The molecular phylogenetic analysis of a concatenated dataset of three ribosomal nuclear loci confirms the placement of <i>Annabella</i> within Cordieritidaceae, as a sister clade to <i>Skyttea</i>.<br>
DOI: 10.6084/m9.figshare.7955960.v3
title: Results and graphs of a questionnaire based survey on effects of metal detecting among British Armed Forces veterans with PTSD and/or other mental health challenges.

description: Sorted results and graphs of a questionnaire based survey on self-assessment of the effects of metal detecting among British Armed Forces veterans with PTSD (Post Traumatic Stress Disorder) and/or other diagnosed or undiagnosed psychological challenges.
DOI: 10.6084/m9.figshare.7955861.v1
title: Supplementary Figure 23 Helium ion microscopy (HIM) buffer and non-phosphorylated controls preclude salt precipitation

description: <b> Helium ion microscopy (HIM) buffer and non-phosphorylated controls preclude salt precipitation. </b>In order to determine that our proteins were forming fractal-like patterns and it was not salt inducing the patterns, a buffer and non-phosphorylated proteins sample controls were used to preclude salt precipitation. (<b>A</b>) Usual HIM square salt crystals on a glass surface. (<b>B</b>) Deposited HNG buffer (50 mM Hepes, 100 mM NaCl, 5% glycerol, pH.7.4, buffer proteins are stored in) on silicon wafer shows no structures on the surface. (<b>C</b>) 3 µM non-pY-AtzAM1 and 2 µM AtzCM1 control shows no fractal-like structures. (<b>D</b>) 3 µM non-pY-AtzAM1 and 1 µM AtzCM1 show no fractal-like structures. All controls demonstrate that fractal structures are formed by phosphorylated protein components.
DOI: 10.6084/m9.figshare.7955864.v2
title: Supplementary Figure 5 and 6 Fractal parameter sweep and dimension analysis

description: All images and raw data files for the fractal parameter sweep used to make supplemental figures 5 and 6. README in folder.
DOI: 10.6084/m9.figshare.7955825
title: Factors associated with motorcycle traffic crash fatalities among active duty U.S. Army personnel

description: <b>Objective:</b> Research on factors associated with motorcycle fatalities among active duty U.S. Army personnel is limited. This analysis describes motorcycle crash–related injuries from 1995 through 2014 and assesses the effect of alcohol use and helmet use on the risk of fatal injury among active duty U.S. Army motorcycle operators involved in a traffic crash, controlling for other factors shown to be potentially associated with fatality in this population. <b>Methods:</b> Demographics, crash information, and injury data were obtained from safety reports maintained in the Army Safety Management Information System. Traffic crashes were defined as crashes occurring on a paved public or private roadway or parking area, including those on a U.S. Army installation. Analysis was limited to motorcycle operators. Odds ratios (ORs) and 95% confidence intervals (95% CIs) from a multivariable analysis estimated the effect of alcohol use and helmet use on the risk of a fatal injury given a crash occurred, controlling for operator and crash characteristics. <b>Results:</b> Of the 2,852 motorcycle traffic crashes, most involved men (97%), operators aged 20–29 years of age (60%), and operators who wore helmets (95%) and did not use alcohol (92%). Two thirds of reported crashes resulted in injuries requiring a lost workday; 17% resulted in fatality. Controlling for operator and crash characteristics, motorcycle traffic crashes involving operators who had used alcohol had a 3.1 times higher odds of fatality than those who did not use alcohol (OR =3.14; 95% CI, 2.17–4.53). Operators who did not wear a helmet had 1.9 times higher odds of fatality than those who did wear a helmet (OR =1.89; 95% CI, 1.24–2.89). <b>Conclusions:</b> Among U.S. Army motorcycle operators, alcohol use and not wearing a helmet increased the odds of fatality, given that a crash occurred, and additional modifiable risk factors were identified. Results will help inform U.S. Army motorcycle policies and training.
DOI: 10.6084/m9.figshare.7955864.v1
title: Atz_computational_data

description: Fractal data analysis tools and raw data.
DOI: 10.25377/sussex.7955699
title: Issa al-Araj, from Bethlehem discussing the 1920 great snow

description: Issa al-Araj (92 years old from Bethlehem) is interviewed by Grace al-Ali on 15 April 1995.<br>Interview focuses on the great snow of 1920; snow was 2 metres deep and people could not even go outside; people had to burn wood to keep warm; everyone was hungry and cold; illness and disease quickly spread; the snow lasted for a whole month; people used to work together to clear the snow; the snowfall severely damaged the houses in Bethlehem and especially the souq; poor people were the worst affected.<br>Original audio recording: cassette tape.<br>Transcript: summary.<br>In the original collection at Bethlehem University this cassette tape was categorised as File 20 of Box 21.<br>This fileset exists as part of the 1920 Great Snow & 1927 Earthquake collection within the Bethlehem University Oral History project of the Planet Bethlehem Archive.
DOI: 10.6084/m9.figshare.7955714
title: Raw data after primer trimming

description: fastq files for study "Bacterial community changes with cryoconite granule size and their susceptibility to exogenous nutrients on 10 glaciers in northwestern Greenland"
DOI: 10.6084/m9.figshare.7955825.v1
title: Factors associated with motorcycle traffic crash fatalities among active duty U.S. Army personnel

description: <b>Objective:</b> Research on factors associated with motorcycle fatalities among active duty U.S. Army personnel is limited. This analysis describes motorcycle crash–related injuries from 1995 through 2014 and assesses the effect of alcohol use and helmet use on the risk of fatal injury among active duty U.S. Army motorcycle operators involved in a traffic crash, controlling for other factors shown to be potentially associated with fatality in this population. <b>Methods:</b> Demographics, crash information, and injury data were obtained from safety reports maintained in the Army Safety Management Information System. Traffic crashes were defined as crashes occurring on a paved public or private roadway or parking area, including those on a U.S. Army installation. Analysis was limited to motorcycle operators. Odds ratios (ORs) and 95% confidence intervals (95% CIs) from a multivariable analysis estimated the effect of alcohol use and helmet use on the risk of a fatal injury given a crash occurred, controlling for operator and crash characteristics. <b>Results:</b> Of the 2,852 motorcycle traffic crashes, most involved men (97%), operators aged 20–29 years of age (60%), and operators who wore helmets (95%) and did not use alcohol (92%). Two thirds of reported crashes resulted in injuries requiring a lost workday; 17% resulted in fatality. Controlling for operator and crash characteristics, motorcycle traffic crashes involving operators who had used alcohol had a 3.1 times higher odds of fatality than those who did not use alcohol (OR =3.14; 95% CI, 2.17–4.53). Operators who did not wear a helmet had 1.9 times higher odds of fatality than those who did wear a helmet (OR =1.89; 95% CI, 1.24–2.89). <b>Conclusions:</b> Among U.S. Army motorcycle operators, alcohol use and not wearing a helmet increased the odds of fatality, given that a crash occurred, and additional modifiable risk factors were identified. Results will help inform U.S. Army motorcycle policies and training.
DOI: 10.25377/sussex.7955699.v1
title: Issa al-Araj, from Bethlehem discussing the 1920 great snow

description: Issa al-Araj (92 years old from Bethlehem) is interviewed by Grace al-Ali on 15 April 1995.<br>Interview focuses on the great snow of 1920; snow was 2 metres deep and people could not even go outside; people had to burn wood to keep warm; everyone was hungry and cold; illness and disease quickly spread; the snow lasted for a whole month; people used to work together to clear the snow; the snowfall severely damaged the houses in Bethlehem and especially the souq; poor people were the worst affected.<br>Original audio recording: cassette tape.<br>Transcript: summary.<br>In the original collection at Bethlehem University this cassette tape was categorised as File 20 of Box 21.<br>This fileset exists as part of the 1920 Great Snow & 1927 Earthquake collection within the Bethlehem University Oral History project of the Planet Bethlehem Archive.
DOI: 10.6084/m9.figshare.7955696
title: lpsn_list_species_final.txt

description: Table derived from data available in LPSN (3/1/2019):- http://www.bacterio.net/-allnamesac.html- http://www.bacterio.net/-allnamesdl.html- http://www.bacterio.net/-allnamesmr.html- http://www.bacterio.net/-allnamessz.html<br>Species names were copied in a text file, and it was edited in the following way in:- subspecies names were eliminated;- Candidatus species were removed;- Species names and publication date were kept as fields.<br>Utilize the "lpsn_list_species_final.txt" in script 7, available in https://github.com/fhsantanna/bibliometrics.<br><br>
DOI: 10.6084/m9.figshare.7955696.v1
title: lpsn_list_species_final.txt

description: Table derived from data available in LPSN (3/1/2019):- http://www.bacterio.net/-allnamesac.html- http://www.bacterio.net/-allnamesdl.html- http://www.bacterio.net/-allnamesmr.html- http://www.bacterio.net/-allnamessz.html<br>Species names were copied in a text file, and it was edited in the following way in:- subspecies names were eliminated;- Candidatus species were removed;- Species names and publication date were kept as fields.<br>Utilize the "lpsn_list_species_final.txt" in script 7, available in https://github.com/fhsantanna/bibliometrics.<br><br>
DOI: 10.6084/m9.figshare.7955687
title: freq_species_curated.csv

description: Curated table derived from "freq_species.csv", containing the frequency of each bacterial species on titles of scientific articles. Species names were corrected, because some of them were misspelled.<br>Utilize the "freq_species_curated.csv" in script 3, available in https://github.com/fhsantanna/bibliometrics.<br>
DOI: 10.25377/sussex.7955660
title: Mikhail Bannoura and Jabra Awwad, from Beit Sahour discussing the 1920 great snow and the 1927 earthquake

description: Mikhail Bannoura and Jabra Awwad (from Beit Sahour) are interviewed by Nadia Awwad.<br>Interview focuses on the locust plague of 1915, the great snow of 1920 and the earthquake of 1927; talks about the sense of social solidarity and mutual support which helped people get through the difficulties of these events, especially the earthquake which destroyed many people's houses in Beit Sahour; people used to help each other reinforce the houses by erecting iron beams to keep them standing.<br>Original audio recording: cassette tape.<br>Transcript: summary.<br>In the original collection at Bethlehem University this cassette tape was categorised as File 19 of Box 21.<br>This fileset exists as part of the 1920 Great Snow and 1927 Earthquake collection within the Bethlehem University Oral History project of the Planet Bethlehem Archive.
DOI: 10.6084/m9.figshare.7954907
title: table_1_eligible_country_ed.csv

description: Table derived from "table_1_eligible_country.csv", which in turn was built using the XML file downloaded from Pubmed ("sp_nov_2001_2018_pubmed_16012019_ed.xml").<br>The difference from "table_1_eligible_country.csv" is that <br>"table_1_eligible_country_ed.csv" is a curated table, containing all countries that were missing in the first one.<br>Utilize "table_curated_countries.csv" in script 5, available in https://github.com/fhsantanna/bibliometrics.
DOI: 10.25377/sussex.7955660.v1
title: Mikhail Bannoura and Jabra Awwad, from Beit Sahour discussing the 1920 great snow and the 1927 earthquake

description: Mikhail Bannoura and Jabra Awwad (from Beit Sahour) are interviewed by Nadia Awwad.<br>Interview focuses on the locust plague of 1915, the great snow of 1920 and the earthquake of 1927; talks about the sense of social solidarity and mutual support which helped people get through the difficulties of these events, especially the earthquake which destroyed many people's houses in Beit Sahour; people used to help each other reinforce the houses by erecting iron beams to keep them standing.<br>Original audio recording: cassette tape.<br>Transcript: summary.<br>In the original collection at Bethlehem University this cassette tape was categorised as File 19 of Box 21.<br>This fileset exists as part of the 1920 Great Snow and 1927 Earthquake collection within the Bethlehem University Oral History project of the Planet Bethlehem Archive.
DOI: 10.6084/m9.figshare.7953692
title: CT raw data MCNAM-PV3951 and MCNAM-PV4004

description: CT data that supports morphological descriptions provided in article "Paleoneurology, auditory region, and associated soft tissue inference in the late Oligocene notoungulates <i>Mendozahippus fierensis</i> and <i>Gualta cuyana</i> (Toxodontia) from central-western Argentina"