cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5661787.v1
title: Oryza officinalis leaf transcriptome

description: De novo transcriptome assembly of Oryza officinalis based on leaf RNAseq data (SRA SRR1179193). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661784
title: Oryza australiensis leaf transcriptome

description: De novo transcriptome assembly of Oryza australiensis based on leaf RNAseq data (SRA SRR1178926). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661784.v1
title: Oryza australiensis leaf transcriptome

description: De novo transcriptome assembly of Oryza australiensis based on leaf RNAseq data (SRA SRR1178926). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661778
title: Oryza meridionalis leaf transcriptome

description: De novo transcriptome assembly of Oryza meridionalis based on leaf RNAseq data (SRA SRR1174790). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661778.v1
title: Oryza meridionalis leaf transcriptome

description: De novo transcriptome assembly of Oryza meridionalis based on leaf RNAseq data (SRA SRR1174790). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661772
title: Oryza glumipatula leaf transcriptome

description: De novo transcriptome assembly of Oryza glumipatula based on leaf RNAseq data (SRA SRR1174772). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5661772.v1
title: Oryza glumipatula leaf transcriptome

description: De novo transcriptome assembly of Oryza glumipatula based on leaf RNAseq data (SRA SRR1174772). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br><br>
DOI: 10.6084/m9.figshare.5661769
title: Oryza coarctata leaf transcriptome

description: De novo transcriptome assembly of Oryza coarctata based on leaf RNAseq data (SRA SRR771527). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661769.v1
title: Oryza coarctata leaf transcriptome

description: De novo transcriptome assembly of Oryza coarctata based on leaf RNAseq data (SRA SRR771527). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661766
title: Oryza barthii leaf transcriptome

description: De novo transcriptome assembly of Oryza barthii based on leaf RNAseq data (SRA SRR1170742). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661766.v1
title: Oryza barthii leaf transcriptome

description: De novo transcriptome assembly of Oryza barthii based on leaf RNAseq data (SRA SRR1170742). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661760
title: Oryza glaberrima leaf transcriptome

description: De novo transcriptome assembly of Oryza glaberrima based on leaf RNAseq data (SRA SRR1174376). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661760.v1
title: Oryza glaberrima leaf transcriptome

description: De novo transcriptome assembly of Oryza glaberrima based on leaf RNAseq data (SRA SRR1174376). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661754
title: Oryza nivara leaf transcriptome

description: De novo transcriptome assembly of Oryza nivara based on leaf RNAseq data (SRA SRR1171629). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661754.v1
title: Oryza nivara leaf transcriptome

description: De novo transcriptome assembly of Oryza nivara based on leaf RNAseq data (SRA SRR1171629). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661748
title: Oryza rufipogon leaf transcriptome

description: De novo transcriptome assembly of Oryza rufipogon based on leaf RNAseq data (SRA SRR1220645). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661748.v1
title: Oryza rufipogon leaf transcriptome

description: De novo transcriptome assembly of Oryza rufipogon based on leaf RNAseq data (SRA SRR1220645). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661742
title: Phyllostachys edulis leaf transcriptome

description: De novo transcriptome assembly of Phyllostachys edulis based on leaf RNAseq data (SRA SRR3056056). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661742.v1
title: Phyllostachys edulis leaf transcriptome

description: De novo transcriptome assembly of Phyllostachys edulis based on leaf RNAseq data (SRA SRR3056056). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661739
title: Xyris jupicai leaf transcriptome

description: De novo transcriptome assembly of Xyris jupicai based on leaf RNAseq data (SRA SRR3233338). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661739.v1
title: Xyris jupicai leaf transcriptome

description: De novo transcriptome assembly of Xyris jupicai based on leaf RNAseq data (SRA SRR3233338). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661730
title: JATH-ASH17-1p_20170826

description: Recordings made at Ashridge using a Petterson M500-384 recorder. For full details see the associated text files.
DOI: 10.6084/m9.figshare.5661730.v1
title: JATH-ASH17-1p_20170826

description: Recordings made at Ashridge using a Petterson M500-384 recorder. For full details see the associated text files.
DOI: 10.6084/m9.figshare.5661727
title: Typha latifolia leaf transcriptome

description: De novo transcriptome assembly of Typha latifolia based on leaf RNAseq data (SRA SRR3233335). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661724
title: Streptochaeta angustifolia leaf transcriptome

description: De novo transcriptome assembly of Streptochaeta angustifolia based on leaf RNAseq data (SRA SRR3233339). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661724.v1
title: Streptochaeta angustifolia leaf transcriptome

description: De novo transcriptome assembly of Streptochaeta angustifolia based on leaf RNAseq data (SRA SRR3233339). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661718
title: Comics created in Graphic Lives project

description: Life story comic created by women from Hyde Community Action as part of the Graphic Lives project.
DOI: 10.6084/m9.figshare.5661697
title: Stegolepis ferruginea leaf transcriptome

description: De novo transcriptome assembly of Stegolepis ferruginea based on leaf RNAseq data (SRA SRR3233331). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661697.v1
title: Stegolepis ferruginea leaf transcriptome

description: De novo transcriptome assembly of Stegolepis ferruginea based on leaf RNAseq data (SRA SRR3233331). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661691
title: Neoregelia carolinae leaf transcriptome

description: De novo transcriptome assembly of Neoregelia carolinae based on leaf RNAseq data (SRA SRR3233334). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661691.v1
title: Neoregelia carolinae leaf transcriptome

description: De novo transcriptome assembly of Neoregelia carolinae based on leaf RNAseq data (SRA SRR3233334). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661688
title: Mayaca fluviatilis leaf transcriptome

description: De novo transcriptome assembly of Mayaca fluviatilis based on leaf RNAseq data (SRA SRR3233326). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661688.v1
title: Mayaca fluviatilis leaf transcriptome

description: De novo transcriptome assembly of Mayaca fluviatilis based on leaf RNAseq data (SRA SRR3233326). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661682
title: Lachnocaulon anceps leaf transcriptome

description: De novo transcriptome assembly of Lachnocaulon anceps based on leaf RNAseq data (SRA SRR3233327). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661682.v1
title: Lachnocaulon anceps leaf transcriptome

description: De novo transcriptome assembly of Lachnocaulon anceps based on leaf RNAseq data (SRA SRR3233327). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661679
title: Juncus effusus leaf transcriptome

description: De novo transcriptome assembly of Juncus effusus based on leaf RNAseq data (SRA SRR3233330). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661679.v1
title: Juncus effusus leaf transcriptome

description: De novo transcriptome assembly of Juncus effusus based on leaf RNAseq data (SRA SRR3233330). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661676
title: supplement.xlsx

description: Dataset: javelin throw in old master athletes
DOI: 10.6084/m9.figshare.5661676.v1
title: supplement.xlsx

description: Dataset: javelin throw in old master athletes
DOI: 10.6084/m9.figshare.5661667
title: Joinvillea ascendens leaf transcriptome

description: De novo transcriptome assembly of Joinvillea ascendens based on leaf RNAseq data (SRA SRR3233337). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661667.v1
title: Joinvillea ascendens leaf transcriptome

description: De novo transcriptome assembly of Joinvillea ascendens based on leaf RNAseq data (SRA SRR3233337). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661664
title: Flagellaria indica leaf transcriptome

description: De novo transcriptome assembly of Flagellaria indica based on leaf RNAseq data (SRA SRR3233329). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661664.v1
title: Flagellaria indica leaf transcriptome

description: De novo transcriptome assembly of Flagellaria indica based on leaf RNAseq data (SRA SRR3233329). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661661
title: Eleocharis dulcis leaf transcriptome

description: De novo transcriptome assembly of Eleocharis dulcis based on leaf RNAseq data (SRA SRR1523109). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661661.v1
title: Eleocharis dulcis leaf transcriptome

description: De novo transcriptome assembly of Eleocharis dulcis based on leaf RNAseq data (SRA SRR1523109). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661655
title: Elegia fenestrata leaf transcriptome

description: De novo transcriptome assembly of Elegia fenestrata based on leaf RNAseq data (SRA SRR3233333). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661655.v1
title: Elegia fenestrata leaf transcriptome

description: De novo transcriptome assembly of Elegia fenestrata based on leaf RNAseq data (SRA SRR3233333). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661652
title: Ecdeiocolea monostachya leaf transcriptome

description: De novo transcriptome assembly of Ecdeiocolea monostachya based on leaf RNAseq data (SRA SRR3233328). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661652.v1
title: Ecdeiocolea monostachya leaf transcriptome

description: De novo transcriptome assembly of Ecdeiocolea monostachya based on leaf RNAseq data (SRA SRR3233328). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661649
title: Cyperus alternifolius leaf transcriptome

description: De novo transcriptome assembly of Cyperus alternifolius based on leaf RNAseq data (SRA SRR3233340). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661649.v1
title: Cyperus alternifolius leaf transcriptome

description: De novo transcriptome assembly of Cyperus alternifolius based on leaf RNAseq data (SRA SRR3233340). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661640
title: Centrolepis monogyna leaf transcriptome

description: De novo transcriptome assembly of Centrolepis monogyna based on leaf RNAseq data (SRA SRR3233336). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661640.v1
title: Centrolepis monogyna leaf transcriptome

description: De novo transcriptome assembly of Centrolepis monogyna based on leaf RNAseq data (SRA SRR3233336). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661637
title: Aphelia sp. leaf transcriptome

description: De novo transcriptome assembly of Aphelia sp. based on leaf RNAseq data (SRA SRR3233332). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661637.v1
title: Aphelia sp. leaf transcriptome

description: De novo transcriptome assembly of Aphelia sp. based on leaf RNAseq data (SRA SRR3233332). Trinity v2.4.0 was used for assembly using default parameters, with Trimmomatic for trimming of reads before assembly.<br>
DOI: 10.6084/m9.figshare.5661628.v3
title: Preventive Effect of Lactobacillus Mixture on Inflammation and Cytokines in Lipopolysaccaride-Induced Cystitis Model

description: Severity of bladder inflammation was categorized according to the BII proposed by Jerde et al., with consideration of leukocyte infiltration into lamina propria and interstitial tissue edema. Leukocyte infiltration was assessed in 1mm<sup>2</sup> areas of tissue section. Score was 0 when there was no infiltration, 1 when there were less than 20 leukocytes, 2 with 20-45 leukocytes, and 3 when there were over 45 leukocytes. With regards to edema in the interstitial tissue, a score of 0 was given for no edema; 1 for mild edema, thinner than the mucosa; 2 for moderate edema, thinner than twice the thickness of the mucosa; and 3 for severe edema, thicker than twice the thickness of the mucosa. Scores for leukocyte infiltration and interstitial edema were added and the average scores for three sites (bladder neck, lateral wall, and bladder dome) in each of the bladder specimens were compared.
DOI: 10.6084/m9.figshare.5661628
title: Preventive effect of Lactobacillus mixture on inflammation and cytokines in lipopolysaccharide-induced cystitis in mice

description: This study aimed to investigate the effects of lactic acid bacterial fermentation extract (LABEF) on cystitis induced by <i>Escherichia coli</i> lipopolysaccharide (LPS) in the mouse bladder by pathological analyses and measurement of the levels of tumor necrosis factor-alpha (TNF-α) and interleukin-18 (IL-18). LABEF was administered orally (5 μg/L) to mice for 10 days following which, the study group (n = 12) was injected intravesically with 5 μg/L LPS. The bladder tissue was then harvested after 24 hours and subjected to hematoxylin and eosin (H-E) staining. A semiquantative score was used to evaluate inflammation (bladder inflammation index; BII). TNF-α immunohistochemical staining and multiplex cytokine assay were also performed. TNF-α and IL-18 levels were determined. The results were compared with those of the control group (n = 12). The BII in the control and study groups was 2.7 ± 0.5 and 1.1 ± 0.7, respectively, with the control group scores significantly differing from the study group scores (p value &lt; 0.001). TNF-α immunohistochemical staining showed similar results. The TNF-α levels determined by the multiplex cytokine assay were 2.82 ± 1.35 pg/mg and 1.55 ± 0.56 pg/mg for the control and study groups, respectively, and the difference in values between these groups was statistically significant (p value = 0.007). Thus, oral administration of LABEF appears to have a preventive effect against the inflammatory responses and TNF-α expression induced by intravesical instillation of LPS in the mouse bladder. Further studies are required to determine the clinical application of this finding.
DOI: 10.6084/m9.figshare.5661628.v6
title: Preventive effect of Lactobacillus mixture on inflammation and cytokines in lipopolysaccharide-induced cystitis in mice

description: This study aimed to investigate the effects of lactic acid bacterial fermentation extract (LABEF) on cystitis induced by <i>Escherichia coli</i> lipopolysaccharide (LPS) in the mouse bladder by pathological analyses and measurement of the levels of tumor necrosis factor-alpha (TNF-α) and interleukin-18 (IL-18). LABEF was administered orally (5 μg/L) to mice for 10 days following which, the study group (n = 12) was injected intravesically with 5 μg/L LPS. The bladder tissue was then harvested after 24 hours and subjected to hematoxylin and eosin (H-E) staining. A semiquantative score was used to evaluate inflammation (bladder inflammation index; BII). TNF-α immunohistochemical staining and multiplex cytokine assay were also performed. TNF-α and IL-18 levels were determined. The results were compared with those of the control group (n = 12). The BII in the control and study groups was 2.7 ± 0.5 and 1.1 ± 0.7, respectively, with the control group scores significantly differing from the study group scores (p value &lt; 0.001). TNF-α immunohistochemical staining showed similar results. The TNF-α levels determined by the multiplex cytokine assay were 2.82 ± 1.35 pg/mg and 1.55 ± 0.56 pg/mg for the control and study groups, respectively, and the difference in values between these groups was statistically significant (p value = 0.007). Thus, oral administration of LABEF appears to have a preventive effect against the inflammatory responses and TNF-α expression induced by intravesical instillation of LPS in the mouse bladder. Further studies are required to determine the clinical application of this finding.
DOI: 10.6084/m9.figshare.5661565
title: Additional file 1: of Double product reflects the association of heart rate with MACEs in acute coronary syndrome patients treated with percutaneous coronary intervention

description: Raw data. (SAV 400 kb)
DOI: 10.6084/m9.figshare.5661565.v1
title: Additional file 1: of Double product reflects the association of heart rate with MACEs in acute coronary syndrome patients treated with percutaneous coronary intervention

description: Raw data. (SAV 400 kb)
DOI: 10.6084/m9.figshare.5661553
title: Additional file 1: S1. of Assessing the outcomes of HIV-infected persons receiving treatment for Kaposi sarcoma in Conakry-Guinea

description: Dataset chemotherapy KS. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.5661550
title: Additional file 3: of Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera

description: Protein Abundance and Quantitative Analyses- APEX protein abundance estimates and differential abundance analyses. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.5661553.v1
title: Additional file 1: S1. of Assessing the outcomes of HIV-infected persons receiving treatment for Kaposi sarcoma in Conakry-Guinea

description: Dataset chemotherapy KS. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.5661550.v1
title: Additional file 3: of Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera

description: Protein Abundance and Quantitative Analyses- APEX protein abundance estimates and differential abundance analyses. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.5661535
title: Additional file 2: of Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera

description: Mass Spectrometry Data- Proteomic data including full Monarch sperm proteome, MS/MS results by replicate, PTM information, orthology relationships and rates of molecular evolution. (XLSX 100Â kb)
DOI: 10.6084/m9.figshare.5661535.v1
title: Additional file 2: of Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera

description: Mass Spectrometry Data- Proteomic data including full Monarch sperm proteome, MS/MS results by replicate, PTM information, orthology relationships and rates of molecular evolution. (XLSX 100Â kb)
DOI: 10.6084/m9.figshare.5661520
title: Additional file 1: of Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera

description: Functional Information- Predicted functions of Monarch proteins curated using Uniprot and Blast2GO. (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.5661520.v1
title: Additional file 1: of Contrasting patterns of evolutionary constraint and novelty revealed by comparative sperm proteomic analysis in Lepidoptera

description: Functional Information- Predicted functions of Monarch proteins curated using Uniprot and Blast2GO. (XLSX 29Â kb)