cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pc866t1qw
title: No consistent effect of daytime versus night-time measurement of thermal tolerance in nocturnal and diurnal lizards

description: While essential in understanding impacts of climate change for organisms,
 diel variation remains an understudied component of temporal variation in
 thermal tolerance limits (i.e. the critical thermal minimum (CTmin) and
 maximum (CTmax)). For example, a higher Ctmax might be expected for an
 individual if the measurement is taken during the day (when heat stress is
 most likely to occur) instead of at night. We measured thermal tolerance
 (Ctmin and Ctmax) during both the daytime and night-time in 101 nocturnal
 and diurnal geckos and skinks in Hong Kong and in South Africa,
 representing six species, and covering a range of habitats. We found that
 period of measurement (day vs. night) only affected Ctmin in South Africa
 (but not in Hong Kong) and that Ctmax was unaffected. Body size and
 species were important factors for determining Ctmax in Hong Kong and
 Ctmin in South Africa, respectively. Overall, however, we did not find
 consistent diel variation of thermal tolerance and suggest that
 measurements of critical thermal limits may be influenced by timing of
 measurement – but that such effects, when present, are likely to be
 context-dependent.
DOI: 10.5061/dryad.xsj3tx9hf
title: Supplement material from: Plasma levels of triglycerides and IL6 are associated with weight regain and fat mass expansion

description: Background/Objective: Long-term weight loss (WL) maintenance is
 the biggest challenge for overweight and obesity due to the almost
 unavoidable phenomenon of partial or even total weight regain (WR) after
 WL. In the current study we investigated the relations of (the changes of)
 adipocyte size and other risk biomarkers with WR during the follow up of
 the Yoyo dietary intervention. Design: In this randomized controlled
 study, 48 overweight/obese participants underwent a (very) low calorie
 diet to lose weight, followed by a weight stable period of 4 weeks and a
 follow-up period of 9 months. Anthropometric measurements, adipocyte
 volume of abdominal subcutaneous adipose tissue and plasma
 metabolic parameters (FFA, TG, total cholesterol, glucose, insulin,
 HOMA-IR, IL6, ACE activity, RBP4) at the beginning and the end of the
 follow-up were analyzed. Results: Our results show that changes
 of TG, IL6, HOMA-IR and ACE are significantly
 positively correlated with WR. Multiple
 linear regression analysis shows that only the changes
 of TG and IL6 remained significantly correlated with WR and increased body
 fat mass. Moreover, the change of HOMA-IR was tightly correlated with the
 change in TG. Surprisingly, the change of adipocyte volume during follow
 up was not correlated with WR nor with other factors, but
 positive correlations between adipocyte volume and HOMA-IR were found at
 the beginning and end of the follow up. Conclusions: These
 results suggest that TG and IL6 are independently linked to WR
 via separate mechanisms, and that HOMA-IR and adipocyte
 volume may indirectly link to WR through the
 change of plasma TG.
DOI: 10.5061/dryad.2fqz612r4
title: Factors associated with coronary heart disease in COPD patients and controls

description: Background COPD and coronary heart disease (CHD) frequently co-occur, yet
 which COPD phenotypes are most prone to CHD is poorly
 understood. The aim of this study was to see whether COPD
 patients did have a true higher risk for CHD than subjects without COPD,
 and to examine a range of potential factors associated with CHD in COPD
 patients and controls Methods 347 COPD patients and 428 non-COPD controls,
 were invited for coronary computed tomography angiography (CCTA) and
 pulmonary CT. Arterial blood gas, bioelectrical impedance and lung
 function was measured, and a detailed medical history taken. The CCTA was
 evaluated for significant coronary stenosis and calcium score (CaSc), and
 emphysema defined as &gt;10% of total area &lt;-950 Hounsfield
 units.  Results 12.6% of the COPD patients and 5.7% of the
 controls had coronary stenosis (p&lt;0.01), whereas 55.9% of the COPD
 patients had a CaSc&gt;100 compared to 31.6% of the controls
 (p&lt;0.01). In a multivariable model adjusting for sex, age, body
 composition, pack-years, CRP, cholesterol/blood pressure lowering
 medication use and diabetes mellitus, the OR (95% CI) for having
 significant stenosis was 1.80 (0.86-3.78) in COPD patients compared with
 controls. In a similar model, the OR (95% CI) for having CaSc&gt;100
 was 1.68 (1.12-2.53) in COPD patients compared with controls. Examining
 the risk of significant stenosis and CaSc&gt;100 among COPD patients,
 no variable was associated with significant stenosis, whereas male sex [OR
 2.85 (1.56-5.21)], age [OR 3.74 (2.42-5.77)], statin use [OR 2.23
 (1.23-4.50)] were associated with CaSc&gt;100, after adjusting for
 body composition, pack-years, C-reactive protein, use of angiotensin
 converting enzyme (ACE) inhibitors or angiotensin receptor blockers
 (ARBs), diabetes, emphysema score, GOLD category, exacerbation frequency,
 eosinophilia, and hypoxemia. Conclusion COPD patients were more likely to
 have CHD, but neither emphysema score, lung function, exacerbation
 frequency, nor hypoxemia predicted presence of either coronary stenosis or
 CaSc&gt;100. 
description: Subset of data from the GeneCOPD follow-up study and the
 MicroCOPD study.
description: See uploaded Read Me file for variable explanations
DOI: 10.5061/dryad.7pvmcvdvr
title: Dryness weakens the positive effects of plant and fungal β diversities on above- and belowground biomass

description: Plant and microbial diversity are key to determine ecosystem functioning.
 Despite the well-known role of local-scale α diversity in affecting
 vegetation productivity, it still remains unclear about the effects of
 community heterogeneity (β diversity) of plants and soil microbes on
 above- and belowground productivity (AGB and BGB) across contrasting
 environments. Here, we conducted a dryness-gradient transect survey over
 3000 km across grasslands on the Tibetan Plateau. We found that plant β
 diversity was more dominant than α diversity in stimulating AGB, while
 soil fungal β diversity was the key driver in enhancing BGB. However,
 these positive effects of plant and microbial β diversity on AGB and BGB
 were strongly weakened by increasing climatic dryness, mainly because
 higher soil available phosphorus caused by increasing dryness reduced both
 plant and soil fungal β diversities. Overall, these new findings highlight
 the critical role of above- and belowground β diversity in sustaining
 grassland productivity, raising our awareness to the ecological risks of
 large-scale biotic homogenization under future climate change.
description: The area of our transect
 survey spanned a latitude range from 30°14’24” to 33°12’9” N, in longitude from
 79°48’43” to
 96°44’24” E and in
 altitude from 3614m to 5016m across grasslands in the Tibetan Plateau of
 China. Specifically, we investigated 61 sampling sites during the peak
 growing season (July to August) of 2019 and 2020. These sites cover four
 grassland types, such as alpine meadow (AM), alpine typical steppe (ATS)
 and alpine desert steppe (ADS). The above vegetation communities were
 dominated by <em>Kobresia pygmaea</em> (AM),<em> Stipa
 purpurea</em> (ATS) and <em>Stipa caucasica</em> (ADS),
 respectively. Furthermore,
 the sampling sites have a large climate gradient, with mean annual
 precipitation (MAP) ranging from 854.8 mm to 92.7 mm and mean annual
 temperature (MAT) from -3.3 to 1.5℃. Soils are classified as Cambisol
 (World Reference Base for Soil Resources). The soil organic matter (SOM)
 ranged from 0.94-9.81%. Soil available nitrogen (AN) and available
 phosphorus (AP) ranged from 28.88-443.71 mg/kg and 0.95-7.11 mg/kg,
 respectively. We obtained the latest 10-year mean annual
 precipitation (MAP) and mean annual temperature (MAT) data (2010–2020)
 from the China Meteorological Data Service Centre (CMDC;
 http://data.cma.cn), based on the located information of 61 sampling site.
 The evapotranspiration (ET) data (2010–2020) was downloaded from the
 Penman-Monteith-Leuning Version2
 (https://developers.google.com/earthengine/datasets/catalog/CAS_IGSNRR_PML
 _V2) (Zhang et al. 2019). Then, we calculated the aridity index by mean
 annual ET divided by MAP to quantify climate dryness (UNESCO 1969; UNEP
 1994; Huang et al. 2016). We also classified the aridity gradients into
 low aridity (aridity index: &lt;1), middle aridity (aridity index:
 1-1.2) and heavy aridity (aridity index:
 &gt;1.2).
DOI: 10.5281/zenodo.17641216
title: The magnetic mineralogy of carbonaceous chondrites: a microscopy and machine learning study of meteorite WIS91600
title: Supplemental Datasets

description: Dataset 1: Full set of BSE images used to create Fig. 1 and for input to UNET segmentation. Each image tile is 250 µm x 250 µm wide. Images are organised into folders representing 43 columns of consecutive images (c_0 to c_42) that can be stitched to make the full image.

Dataset 2: A collection of hyperspectral SEM/EDS datasets in .bcf format plus the Jupyter Notebook (Interactive_SEM_WIS.ipynb) to be run using SIGMA2 (see https://sigma2-documentation.readthedocs.io/en/latest/ to download and install SIGMA2). Files are named according to the corresponding Figured in the main text and supplement of the paper.

Dataset 3: Full set of UNET segmented images derived from the BSE Dataset 1 used to create Fig. S1.

Supplemental Movie 1. Movie of micromagnetic simulation results for a model framboid (see Fig. 12 for details).

Stich.pdf: A pdf showing the full stitched set of BSE images for FIg. 1. Yellow circles highlight many of the features focussed on in the paper.

WIS Seg Stitch.pdf: A pdf showing the full stiched together segmented images. Zoom in to right lower corner to see evidence of impact texture.

AGU Movie Test x: .avi and .mov versions of selected 3D animations of FIBnt results.
DOI: 10.5061/dryad.s7h44j18h
title: Fruit-feeding butterflies of Nyungwe National Park, Rwanda

description: A study was conducted in Nyungwe National Park, Rwanda from October 2019
 to August 2020. The study aimed at documenting the diversity and
 distribution of fruit-feeding butterflies across an elevation gradient in
 Nyungwe National Park. Sampling was conducted seasonally using fruit-bated
 traps. Higher species richness was documented at low altitudes and decline
 with increasing elevation. 
description: Butterflies were collected seasonally using traps baited with
 fermented bananas. Traps were set at each 25 m elevation interval along
 the trail spanning from 1700 m to 2950 m of altitude within Nyungwe
 National Park, Rwanda.  Vegetation type and canopy cover were also
 recorded to characterize the butterfly habitat use in Nyungwe National
 Park. Data were analyzed to assess the distribution
 patterns of fruit-feeding butterflies in Nyungwe National Park.
DOI: 10.5281/zenodo.17641215
title: The magnetic mineralogy of carbonaceous chondrites: a microscopy and machine learning study of meteorite WIS91600
title: Supplemental Datasets

description: Dataset 1: Full set of BSE images used to create Fig. 1 and for input to UNET segmentation. Each image tile is 250 µm x 250 µm wide. Images are organised into folders representing 43 columns of consecutive images (c_0 to c_42) that can be stitched to make the full image.

Dataset 2: A collection of hyperspectral SEM/EDS datasets in .bcf format plus the Jupyter Notebook (Interactive_SEM_WIS.ipynb) to be run using SIGMA2 (see https://sigma2-documentation.readthedocs.io/en/latest/ to download and install SIGMA2). Files are named according to the corresponding Figured in the main text and supplement of the paper.

Dataset 3: Full set of UNET segmented images derived from the BSE Dataset 1 used to create Fig. S1.

Supplemental Movie 1. Movie of micromagnetic simulation results for a model framboid (see Fig. 12 for details).

Stich.pdf: A pdf showing the full stitched set of BSE images for FIg. 1. Yellow circles highlight many of the features focussed on in the paper.

WIS Seg Stitch.pdf: A pdf showing the full stiched together segmented images. Zoom in to right lower corner to see evidence of impact texture.

AGU Movie Test x: .avi and .mov versions of selected 3D animations of FIBnt results.
DOI: 10.57707/fmi-b2share.z2str-x9h71
title: Data for manuscript:"Atmospheric and cryospheric observations at the high-altitude Zarafshon River Basin and the hydrographic party glacier (GGP), Tajikistan"

description: These data are atmospheric and cryospheric observations made at the GGP glacier in Tajikistan between 2018 and 2025. The data consists of autumn expedition observations (2018, 2019, 2021, 2023, 2024 and 2025), as well as continuous meteorological observations at the site. Observations include 
- Glacier surface area and evolution with in situ, UAV-based and remote sensing observations
- Meteorological measurements
- Glacier snow and - ice properties including impurities
- Atmospheric aerosol observations
The observations tell about the state of the GGP glacier, its evolution and environmental drivers of that evolution.
DOI: 10.5061/dryad.kd51c5b7n
title: Metabolic and demographic data from the LTEE

description: These data are the metabolic data and demographic data underlying the
 paper, "Long-term experimental evolution decouples size and
 production costs in Escherichia coli". 
description: See methods of paper for details
description: See read me file for description of columns, methods for the
 approaches
DOI: 10.5061/dryad.kwh70rz5k
title: M-values from Illumina EPIC BeadChip DNA methylation analyses on DNA in whole blood for children exposed to PFAS

description: Perfluoroalkyl substances (PFASs) are widespread synthetic substances with
 various adverse health effects. A potential mechanism of toxicity for
 PFASs is via epigenetic changes, such as DNA methylation. In this
 exploratory study with school-age children exposed to PFASs through
 drinking water highly contaminated from firefighting foams, we aimed to
 investigate whether exposure to PFASs was associated with alteration in
 DNA methylation and epigenetic age acceleration. Sixty-three children aged
 7–11 years from the Ronneby Biomarker Cohort (Sweden) were included. The
 children were either controls with only background exposure (n=32;
 perfluorooctane sulfonic acid: median 2.8 and range AQ11 1–5ng/ml) or
 those exposed to very high levels of PFASs (n=31; perfluorooctane sulfonic
 acid: median 295 and range 190–464ng/ml). These two groups were matched on
 sex, age, and body mass index. Genome-wide methylation of whole-blood DNA
 was analyzed using the Infinium MethylationEPIC BeadChip kit.
DOI: 10.5061/dryad.c59zw3r98
title: Parasite resistance and parasite tolerance: insights into transgenerational immune priming in an invertebrate host

description: Parasites impose different selection regimes on their hosts, which respond
 by increasing their resistance and/or tolerance. Parental challenge with
 parasites can enhance the immune response of their offspring, a phenomenon
 documented in invertebrates and termed transgenerational immune priming.
 We exposed two parental generations of the model organism Daphnia magna to
 the horizontally-transmitted parasitic yeast Metschnikowia bicuspidata,
 and recorded resistance- and tolerance-related traits in the offspring
 generation. We hypothesized that parentally-primed offspring will increase
 either their resistance or their tolerance to the parasite. Our
 susceptibility assays revealed no impact of parental exposure on offspring
 resistance. Nonetheless, different fitness-related traits, which are
 indicative of tolerance, were altered. Specifically, maternal priming
 increased offspring production and decreased survival. Grandmaternal
 priming positively affected age at first reproduction and negatively
 affected brood size at first reproduction. Interestingly, both maternal
 and grandmaternal priming significantly reduced within-host parasite
 proliferation. Nevertheless, Daphnia primed for two consecutive
 generations had no competitive advantage in comparison to unprimed ones,
 implying additive maternal and grandmaternal effects. Our findings do not
 support evidence of transgenerational immune priming from bacterial
 infections in the same host species, thus emphasizing that
 transgenerational immune responses may not be consistent even within the
 same host species.
description: We challenged<em> D. magna </em>hosts from two
 different clones with the exclusively horizontally-transmitted parasitic
 yeast <em>Metschnikowia bicuspidata</em> for two consecutive generations and
 assessed their offspring’s resistance and tolerance. We measured infection
 rate, spore production, and life-history traits such as age at first
 reproduction, brood size at first reproduction, offspring production, and
 survival. We selected the most parsimonious model using the
 "MuMIN" package in r. Data were visualized with the r package
 “ggplot2”.
DOI: 10.5061/dryad.p8cz8w9s8
title: Pollinator surveys of two populations located in the North and South of Mallorca (Balearic Islands, Spain) in 2021 from May to July focused on Eryngium maritimum pollinators

description: The aim of this study is to analyse the role played by E. maritimum in the
 dune pollination network of the Balearic Islands, where there is an
 intense anthropogenic impact in its habitat. For this purpose, two
 populations located in the North and South of Mallorca were chosen, in
 which diurnal transects were carried out to observe and capture
 pollinators on 15 plant species during the anthesis period of E.
 maritimum. The flowering period of 10 plant species flowering at the same
 period than E. maritimum was analysed to identify periods of competition
 First sampling area was located in Son Serra de Marina (SS, 39.7309N,
 3.2382E), in the North of the island.  We carried out three 50m
 linear transects along the seashore. Transects were randomly located at a
 minimum of 100 m from each other in order to enhance the chances of a fair
 sampling of most of the flora. In both areas, vegetation, and so
 transects, followed a clear sequence from the seashore inland. Areas were
 sampled for 10 weeks, from the beginning of E. maritimum flowering in the
 first week of June until the second week of July, plus two weeks extra
 (one after and one before) in order two observe pollinator diversity
 variation. Surveys took place between 08:00–18:00h under favourable
 weather conditions. A pollinator survey involved an observer slowly
 walking (40 min) along a transect and recording only those insects that
 contacted the plant's reproductive structures while actively
 searching for pollen and/or nectar.  The dataset indicates each
 observation in a single row. Population, hour, transect, pollinator and
 plant taxonomical information, if the pollinator was captured,
 photographed or if it visited multiple species is indicated.
DOI: 10.4121/61d3c5c7-4dba-485f-8c95-0f8bf72d5046
title: Data underlying the master thesis: Factors influencing invertebrate diversity on green rooftops in the Netherlands

description: This study investigates how green roof characteristics and surrounding landscapes influence pollinator diversity and abundance in urban areas. Researchers collected ecological data on arthropods, using pan traps, pitfalls and hand netting across 21 green roofs categorized as sedum roofs, nature roofs, and roof gardens. The dataset includes measures of species richness, abundance, and functional diversity, alongside roof-level variables (flower diversity, vegetation cover, microrelief, roof size, height, and age) and landscape factors (percentage and proximity of surrounding green space). The research aims to identify which factors most strongly shape pollinator communities, providing evidence-based guidance for designing biodiversity-friendly green roofs.
DOI: 10.4121/61d3c5c7-4dba-485f-8c95-0f8bf72d5046.v1
title: Data underlying the master thesis: Factors influencing invertebrate diversity on green rooftops in the Netherlands

description: This study investigates how green roof characteristics and surrounding landscapes influence pollinator diversity and abundance in urban areas. Researchers collected ecological data on arthropods, using pan traps, pitfalls and hand netting across 21 green roofs categorized as sedum roofs, nature roofs, and roof gardens. The dataset includes measures of species richness, abundance, and functional diversity, alongside roof-level variables (flower diversity, vegetation cover, microrelief, roof size, height, and age) and landscape factors (percentage and proximity of surrounding green space). The research aims to identify which factors most strongly shape pollinator communities, providing evidence-based guidance for designing biodiversity-friendly green roofs.
DOI: 10.5061/dryad.jwstqjqbj
title: Archive data supporting the results in the paper: Long-term soil warming alters fine root dynamics and morphology, and their ectomycorrhizal fungal community in a temperate forest soil"

description: Climate warming is predicted to affect temperate forests severely, but the
 response of fine roots, key to plant nutrition, water uptake, soil carbon
 and nutrient cycling is unclear. Understanding how fine roots will respond
 to increasing temperature is a prerequisite for predicting the functioning
 of forests in a warmer climate. We studied the response of fine roots and
 their ectomycorrhizal (EcM) fungal and root-associated bacterial
 communities to soil warming by 4 °C in a mixed spruce-beech forest in the
 Austrian Limestone Alps after 8 and 14 years of soil warming,
 respectively. Fine root biomass (FRB) and fine root production were 17%
 and 128% higher in the warmed plots, respectively, after 14 years. The
 increase in FRB (13%) was not significant after 8 years of treatment,
 whereas specific root length, specific root area, and root tip density
 were significantly higher in warmed plots at both sampling occasions. Soil
 warming did not affect EcM exploration types and diversity, but changed
 their community composition, with an increase in the relative abundance of
 Cenoccocum at 0 – 10 cm soil depth, a drought-stress tolerant genus, and
 an increase in short and long-distance exploration types like Sebacina and
 Boletus at 10 – 20 cm soil depth. Warming increased the root-associated
 bacterial diversity but did not affect their community composition. Soil
 warming did not affect nutrient concentrations of fine roots, though we
 found indications of limited soil phosphorus (P) and potassium (K)
 availability. Our findings suggest that, in the studied ecosystem, global
 warming could persistently increase soil carbon inputs due to accelerated
 fine root growth and turnover, and could simultaneously alter fine root
 morphology and EcM fungal community composition towards improved nutrient
 foraging.