cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1187590.10fu
title: SH1187590.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187591.10fu
title: SH1187591.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187594.10fu
title: SH1187594.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187598.10fu
title: SH1187598.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187601.10fu
title: SH1187601.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1187602.10fu
title: SH1187602.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25921/etwz-8286
title: NOAA/WDS Paleoclimatology - Hartl - Oberammergau, Wank - PCAB - ITRDB DEU382

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/e6qy-sn07
title: NOAA/WDS Paleoclimatology - Hartl - Saalforste, Grasenbach - FASY - ITRDB DEU385

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/e588-4202
title: NOAA/WDS Paleoclimatology - Hartl - Saalforste, Mittergwänd - ABAL - ITRDB DEU393

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/ezyh-0y49
title: NOAA/WDS Paleoclimatology - Margolis fire data from Joaquin Canyon East SFNF, Southwest US - IMPD USJCE002

description: Prior research suggests that Indigenous fire management buffers climate influences on wildfires, but it is unclear whether these benefits accrue across geographic scales. We use a network of 4824 fire-scarred trees in Southwest United States dry forests to analyze up to 400 years of fire-climate relationships at local, landscape, and regional scales for traditional territories of three different Indigenous cultures. Comparison of fire-year and prior climate conditions for periods of intensive cultural use and less-intensive use indicates that Indigenous fire management weakened fire-climate relationships at local and landscape scales. This effect did not scale up across the entire region because land use was spatially and temporally heterogeneous at that scale. Restoring or emulating Indigenous fire practices could buffer climate impacts at local scales but would need to be repeatedly implemented at broad scales for broader regional benefits.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usjce002.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usjce002-noaa.txt
DOI: 10.25921/ez8z-aa58
title: NOAA/WDS Paleoclimatology - Farris fire data from Mica Mountain - IMPD US02_006

description: Fire scars are used widely to reconstruct historical fire regime parameters in forests around the world. Because fire scars provide incomplete records of past fire occurrence at discrete points in space, inferences must be made to reconstruct fire frequency and extent across landscapes using spatial networks of fire-scar samples. Assessing the relative accuracy of fire-scar fire history reconstructions has been hampered due to a lack of empirical comparisons with independent fire history data sources. We carried out such a comparison in a 2780-ha ponderosa pine forest on Mica Mountain in southern Arizona (USA) for the time period 1937–2000. Using documentary records of fire perimeter maps and ignition locations, we compared reconstructions of key spatial and temporal fire regime parameters developed from documentary fire maps and independently collected fire-scar data (n = 60 plots). We found that fire-scar data provided spatially representative and complete inventories of all major fire years (>100 ha) in the study area but failed to detect most small fires. There was a strong linear relationship between the percentage of samples recording fire scars in a given year (i.e., fire-scar synchrony) and total area burned for that year (y = 0.0003x + 0.0087, r2 = 0.96). There was also strong spatial coherence between cumulative fire frequency maps interpolated from fire-scar data and ground-mapped fire perimeters. Widely reported fire frequency summary statistics varied little between fire history data sets: fire-scar natural fire rotations (NFR) differed by <3 yr from documentary records (29.6 yr); mean fire return intervals (MFI) for large-fire years (i.e., ≥25% of study area burned) were identical between data sets (25.5 yr); fire-scar MFIs for all fire years differed by 1.2 yr from documentary records. The known seasonal timing of past fires based on documentary records was furthermore reconstructed accurately by observing intra-annual ring position of fire scars and using knowledge of tree-ring growth phenology in the Southwest. Our results demonstrate clearly that representative landscape-scale fire histories can be reconstructed accurately from spatially distributed fire-scar samples.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us02_006.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us02_006-noaa.txt
DOI: 10.25921/era4-gx56
title: NOAA/WDS Paleoclimatology - Zampieri - Myakka River State Park - PIPA - ITRDB FL018

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
description: July 2024: Elevation added by WDS-Paleo using get_elev_point() from the elevatr R package with the USGS Elevation Point Query Service (epqs) and WGS 84 reference frame.
DOI: 10.25921/e7b6-1a37
title: NOAA/WDS Paleoclimatology - Black - Marys Peak - ABPR - ITRDB OR108

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/et9e-xg47
title: NOAA/WDS Paleoclimatology - McPartland - Cloquet Forestry Center Camp 8 - PIRE - ITRDB MN033

description: The Great Lakes region of North America has warmed by 1–2 °C on average since pre-industrial times, with the most pronounced changes observable during winter and spring. Interannual variability in temperatures remains high, however, due to the influence of ocean-atmosphere circulation patterns that modulate the warming trend across years. Variations in spring temperatures determine growing season length and plant phenology, with implications for whole ecosystem function. Studying how both internal climate variability and the “secular” warming trend interact to produce trends in temperature is necessary to estimate potential ecological responses to future warming scenarios. This study examines how external anthropogenic forcing and decadal-scale variability influence spring temperatures across the western Great Lakes region and estimates the sensitivity of regional forests to temperature using long-term growth records from tree-rings and satellite data. Using a modeling approach designed to test for regime shifts in dynamic time series, this work shows that mid-continent spring climatology was strongly influenced by the 1976/1977 phase change in North Pacific atmospheric circulation, and that regional forests show a strengthening response to spring temperatures during the last half-century.
description: collected Aug 2020, 2020 included in chronology
DOI: 10.25921/ecas-j160
title: NOAA/WDS Paleoclimatology - Wager - Big Cottonwood West - PSME - ITRDB UT564

description: This study assessed the potential for ozone injury to vegetation in the central Wasatch Mountains of Utah by determining if Douglas-fir (Pseudotsuga menziesii var. glauca (Beissn.) Franco) experienced reduced growth since the onset of high ozone concentrations. Dendrochronological techniques were used to model Douglas-fir growth in six central Wasatch Mountain stands, where ozone concentrations suggest the possibility of injury to vegetation, and in four Bear River stands, where ozone concentrations are lower than injury thresholds. Previous-year growth, temperature, and Palmer's Z index variables explained 53–70% of the variance in annual growth. Reduced Douglas-fir growth, not explained by the model or insect and disease records, occurred after 1970 in the central Wasatch Mountains but not in the Bear River Mountains. Douglas-fir growth in the central Wasatch Mountains was slightly negatively correlated with the previous-year ozone concentrations in nearby Salt Lake valley. Between 1962 and 1973, a fluctuating budworm population due to varying spring precipitation was suggested to have replaced precipitation as the factor limiting tree growth, causing an anomalous negative relationship between precipitation and Douglas-fir growth. Because of a suite of possible factors (e.g., undetected climatic variables, fungal pathogens, competitive interactions) influencing Douglas-fir growth, ozone may be one factor in a larger stressor complex reducing growth.
DOI: 10.25921/eb2r-3x97
title: NOAA/WDS Paleoclimatology - Griffin - Tejon Valley Transect Low Riparian - QULO - ITRDB CA730

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/e8x3-am98
title: NOAA/WDS Paleoclimatology - Touchan - Bout-Chaout - PIHA - ITRDB DZA011

description: The first large-scale network of tree-ring chronologies from the western Mediterranean (WM; 32°N–43°N, 10°W–17°E) is described and analyzed to identify the seasonal climatic signal in indices of annual ring width. Correlation and rotated empirical orthogonal function analyses are applied to 85 tree-ring series and corresponding gridded climate data to assess the climate signal embedded in the network. Chronologies range in length from 80 to 1129 years. Monthly correlations and partial correlations show overall positive associations for Pinus halepensis (PIHA) and Cedrus atlantica (CDAT) with winter (December–February) and spring (March–May) precipitation across this network. In both seasons, the precipitation correlation with PIHA is stronger, while CDAT chronologies tend to be longer. A combination of positive correlations between growth and winter–summer precipitation and negative partial correlations with growing season temperatures suggests that chronologies in at least part of the network reflect soil moisture and the integrated effects of precipitation and evapotranspiration signal. The range of climate response observed across this network reflects a combination of both species and geographic influences. Western Moroccan chronologies have the strongest association with the North Atlantic Oscillation.
DOI: 10.25921/ed94-tk46
title: NOAA/WDS Paleoclimatology - Heyerdahl fire data from Brush Creek, central Oregon - IMPD USBRU001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.
DOI: 10.25921/e77a-4273
title: NOAA/WDS Paleoclimatology - Brown fire data from Prairie Farm Fire, central Oregon - IMPD USPFF001

description: Records of past fire occurrence from tree rings, charcoal found in lake sediments, and other proxies. Parameter keywords describe what was measured in this data set.  Additional summary information can be found in the abstracts of papers listed in the data set citations.  Additional information on the International Multiproxy Database (IMPD) data set procedures are also available.
DOI: 10.15468/dl.q6uzhx
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "HasCoordinate is true",
 "Country is Italy"
 ]
}

 The dataset includes 186 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006422-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/e6pg-nb16
title: NOAA/WDS Paleoclimatology - Touchan - Assco Forest, Corsica - PINI - ITRDB FRA056

description: The first large-scale network of tree-ring chronologies from the western Mediterranean (WM; 32°N–43°N, 10°W–17°E) is described and analyzed to identify the seasonal climatic signal in indices of annual ring width. Correlation and rotated empirical orthogonal function analyses are applied to 85 tree-ring series and corresponding gridded climate data to assess the climate signal embedded in the network. Chronologies range in length from 80 to 1129 years. Monthly correlations and partial correlations show overall positive associations for Pinus halepensis (PIHA) and Cedrus atlantica (CDAT) with winter (December–February) and spring (March–May) precipitation across this network. In both seasons, the precipitation correlation with PIHA is stronger, while CDAT chronologies tend to be longer. A combination of positive correlations between growth and winter–summer precipitation and negative partial correlations with growing season temperatures suggests that chronologies in at least part of the network reflect soil moisture and the integrated effects of precipitation and evapotranspiration signal. The range of climate response observed across this network reflects a combination of both species and geographic influences. Western Moroccan chronologies have the strongest association with the North Atlantic Oscillation.