cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16905689
title: Data and code for "Deconstructing the  morphological basis of ecogeographic variation in the hand-wing index, a widely used  proxy for avian mobility, in the Yellow Warbler (Setophaga petechia)"

description: Citation: "Deconstructing the morphological basis of ecogeographic variation in the hand-wing index, a widely used proxy for avian mobility, in the Yellow Warbler (Setophaga petechia)". Pegan TM, Ting V, Benz BW, Winger BM. American Naturalist.

Brief abstract: Bird species with high demand for efficient flight (e.g., migrants) tend to have more pointed wing tips than sedentary birds, and indices describing wing tip pointedness such as the Hand-Wing Index (HWI) are often used as proxies for dispersal propensity in comparative studies. Wing pointedness also varies among closely related populations of the same species that experience different selection pressures on flight, but we know surprisingly little about how variation in bone versus feather lengths contributes to wing pointedness. Here, we compare wing tip shape (HWI) of migratory versus sedentary populations of a widespread songbird, the Yellow Warbler (Setophaga petechia), to deconstruct variation in the individual skeletal and feather components of the hand-wing. Our results reveal that the relatively pointed wing shape of migrants is a consequence of shorter secondary feathers (i.e., a narrower wing) compared to non-migrants, rather than longer wings. Indeed, despite having more pointed wings, migratory populations have similar wing length (that is, wing chord) as sedentary continental populations. These populations show similar trunk size, but migrants have significantly shorter limb bones. Our results reveal the morphological underpinnings of a wing shape metric that has been widely used in macroevolutionary and macroecological studies of avian dispersal. This folder contains one R script that performs all of the analyses in the manuscript, as well as the underlying data.
DOI: 10.5281/zenodo.16905690
title: Data and code for "Deconstructing the  morphological basis of ecogeographic variation in the hand-wing index, a widely used  proxy for avian mobility, in the Yellow Warbler (Setophaga petechia)"

description: Citation: "Deconstructing the morphological basis of ecogeographic variation in the hand-wing index, a widely used proxy for avian mobility, in the Yellow Warbler (Setophaga petechia)". Pegan TM, Ting V, Benz BW, Winger BM. American Naturalist.

Brief abstract: Bird species with high demand for efficient flight (e.g., migrants) tend to have more pointed wing tips than sedentary birds, and indices describing wing tip pointedness such as the Hand-Wing Index (HWI) are often used as proxies for dispersal propensity in comparative studies. Wing pointedness also varies among closely related populations of the same species that experience different selection pressures on flight, but we know surprisingly little about how variation in bone versus feather lengths contributes to wing pointedness. Here, we compare wing tip shape (HWI) of migratory versus sedentary populations of a widespread songbird, the Yellow Warbler (Setophaga petechia), to deconstruct variation in the individual skeletal and feather components of the hand-wing. Our results reveal that the relatively pointed wing shape of migrants is a consequence of shorter secondary feathers (i.e., a narrower wing) compared to non-migrants, rather than longer wings. Indeed, despite having more pointed wings, migratory populations have similar wing length (that is, wing chord) as sedentary continental populations. These populations show similar trunk size, but migrants have significantly shorter limb bones. Our results reveal the morphological underpinnings of a wing shape metric that has been widely used in macroevolutionary and macroecological studies of avian dispersal. This folder contains one R script that performs all of the analyses in the manuscript, as well as the underlying data.
DOI: 10.15468/dl.dbums7
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039870-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3hg6hm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039873-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ent4f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is Korea (Democratic People’s Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039872-250811113504898/datasets/export for details.
DOI: 10.15468/dl.xmkb9z
title: Occurrence Download

description: A dataset containing 1256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1256 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039874-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dw47sr
title: Occurrence Download

description: A dataset containing 818353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branta canadensis",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 818353 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039845-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27068218.v1
title: Monitoramento das Eleições Municipais 2024 - Relatório 3

description: Projeto FAPESP (2022/09091-8) - "Criminalidade, Insegurança e Legitimidade: uma abordagem transdisciplinar" (CIL) - Observatório da Legitimidade Democrática (OBLED)Núcleo de Estudos da Violência - Universidade de São Paulo (NEV/USP)Centro de Ciências Matemáticas Aplicadas à Indústria - Universidade de São Paulo (CEMEAI/USP)<br>
DOI: 10.15468/dl.evp6uu
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 178 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039878-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kv2ase
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039879-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk4xwh
title: Occurrence Download

description: A dataset containing 14271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14271 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039880-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svedhs
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Crossoptilon mantchuricum",
 "Year 2020-2025"
 ]
}

 The dataset includes 65 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039882-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zp6mcb
title: Occurrence Download

description: A dataset containing 29987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Genista monspessulana"
 ]
}

 The dataset includes 29987 records from 279 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039881-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15268896
title: austrolebias_wolterstorffi_spades_01.fasta.gz
DOI: 10.5281/zenodo.15268897
title: austrolebias_wolterstorffi_spades_01.fasta.gz
DOI: 10.5281/zenodo.15187315
title: AOM_TmYbLiLuF4

description: The data repository for the published data on Tm,Yb:LiLuF4.
DOI: 10.5281/zenodo.15187316
title: AOM_TmYbLiLuF4

description: The data repository for the published data on Tm,Yb:LiLuF4.
DOI: 10.15468/dl.hftnn7
title: Occurrence Download

description: A dataset containing 547447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Flavobacteriaceae"
 ]
}

 The dataset includes 547447 records from 646 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006296-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15478228
title: FIShBOT Archive 2025-05-21

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15478229
title: FIShBOT Archive 2025-05-21

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.15272592
title: KITOBLAR VA ULARNING UNVERSITETDA TA'LIM MADANIYATINI SHAKLLANTIRISHGA TA'SIRI.
DOI: 10.5281/zenodo.15272593
title: KITOBLAR VA ULARNING UNVERSITETDA TA'LIM MADANIYATINI SHAKLLANTIRISHGA TA'SIRI.
DOI: 10.5517/ccdc.csd.cc2gv90n
title: CCDC 2289381: Experimental Crystal Structure Determination

description: Related Article: Kanishka Raghuvanshi, Abhineet Verma, Sailaja S. Sunkari|2025|J.Lumin.|283|121284|doi:10.1016/j.jlumin.2025.121284
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k632z
title: CCDC 2359350: Experimental Crystal Structure Determination

description: Related Article: Eya Toumi, Nour Elleuch, Sergiu Shova, Mohamed Boujelbene|2025|J.Mol.Struct.|1340|142481|doi:10.1016/j.molstruc.2025.142481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kfszs
title: CCDC 2366756: Experimental Crystal Structure Determination

description: Related Article: Ae Ran Lim|2025|Chem.Phys.|596|112746|doi:10.1016/j.chemphys.2025.112746
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ll1lv
title: CCDC 2400627: Experimental Crystal Structure Determination

description: Related Article: Giulia Cazzaniga, Davide Capelli, Roberta Montanari, Enrico Mario Alessandro Fassi, Giovanni Grazioso, Andrea Tresoldi, Francesca Rinaldi, Enrica Calleri, Ivan Bassanini, Sergio Romeo, Mariangela Garofalo, Matteo Mori, Fiorella Meneghetti, Stefania Villa|2025|Eur.J.Med.Chem.|292|117657|doi:10.1016/j.ejmech.2025.117657
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.287hu9
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Scarites quadriceps Chaudoir, 1843",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 271 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007504-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15465357
title: Artificial Intelligence in Human Resources: A Systematic Review
DOI: 10.5281/zenodo.15465358
title: Artificial Intelligence in Human Resources: A Systematic Review
DOI: 10.5517/ccdc.csd.cc2n9w62
title: CCDC 2452354: Experimental Crystal Structure Determination

description: Related Article: Schollmeyer, Dieter, Laufer, Stefan, Wolfgang Albrecht, Roland Selig|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n9wc7
title: CCDC 2452359: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.bcq4ja
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lampetra zanandreai Vladykov, 1955"
 ]
}

 The dataset includes 168 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007505-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.z9ndzv0g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (180 records)
DOI: 10.5281/zenodo.15465348
title: TİMUR X TANK PROJESİPROJEM
title: TİMUR X TANK
DOI: 10.5281/zenodo.15465349
title: TİMUR X TANK PROJESİPROJEM
title: TİMUR X TANK
DOI: 10.5281/zenodo.12672892
title: A Catalogue of All Known AM CVn Binary Systems

description: Introduction: I present a catalogue that collects all known AM CVn binary systems in one place. The goal of this catalogue is to prevent the duplicated effort of multiple researchers searching for known systems through the literature. Where applicable, the catalogue includes orbital periods and Gaia cross-matches, as well as important references for each system. The systems are split into two tables, one of spectroscopically-confirmed AM CVn binaries, and the other of candidate binaries.

Up to date as of 2024-04-01.
DOI: 10.5281/zenodo.15116793
title: A Catalogue of All Known Mass-Transferring Ultracompact Binary Systems

description: Introduction: I present a catalogue that collects all known mass-transferring ultracompact binary systems in one place. This includes AM CVn-type binaries, helium-enriched CVs and a variety of other objects.

The goal of this catalogue is to prevent the duplicated effort of multiple researchers searching for known systems through the literature. Where applicable, the catalogue includes orbital periods, measured masses, Gaia cross-matches, as well as important references for each system. The catalogue includes 'confirmed' systems (usually means an orbital period measurement and/or a spectrum) and 'candidates' (may be selected based on other properties such as outburst shape).

For full details and references see the associated paper (accepted to A&A). Preprint at https://arxiv.org/abs/2505.10535

See the catalogue itself in the file 'amcvn_catalogue.fits'.

Up to date as of 2025-04-01.
DOI: 10.5281/zenodo.8276712
title: A Catalogue of All Known Mass-Transferring Ultracompact Binary Systems

description: Introduction: I present a catalogue that collects all known mass-transferring ultracompact binary systems in one place. This includes AM CVn-type binaries, helium-enriched CVs and a variety of other objects.

The goal of this catalogue is to prevent the duplicated effort of multiple researchers searching for known systems through the literature. Where applicable, the catalogue includes orbital periods, measured masses, Gaia cross-matches, as well as important references for each system. The catalogue includes 'confirmed' systems (usually means an orbital period measurement and/or a spectrum) and 'candidates' (may be selected based on other properties such as outburst shape).

For full details and references see the associated paper (accepted to A&A). Preprint at https://arxiv.org/abs/2505.10535

See the catalogue itself in the file 'amcvn_catalogue.fits'.

Up to date as of 2025-04-01.
DOI: 10.5281/zenodo.8276713
title: A Catalogue of All Known AM CVn Binary Systems

description: Introduction: I present a catalogue that collects all known AM CVn binary systems in one place. The goal of this catalogue is to prevent the duplicated effort of multiple researchers searching for known systems through the literature. Where applicable, the catalogue includes orbital periods and Gaia cross-matches, as well as important references for each system. The systems are split into two tables, one of spectroscopically-confirmed AM CVn binaries, and the other of candidate binaries.
DOI: 10.15468/dl.mwnmkt
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Living Specimen, Occurrence evidence)",
 "Continent is Europe",
 "Country is Portugal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (February, March, April, May, June, July, August, September, October, November, December, January)",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibalanus amphitrite (Darwin, 1854)",
 "Year 2019-2024"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007507-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2v2j7
title: Occurrence Download

description: A dataset containing 3136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Myrianthus P.Beauv."
 ]
}

 The dataset includes 3136 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007506-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7274/28792484
title: Biophysical Characterization of Novel Protein Dynamics in the Adaptive Immune System

description: Biophysics is the study of the form and function of life’s machines. It combines the fields of biology, biochemistry, physics, and mathematics to study microscopic phenomena. The components of the immune system that confer a response are full of complexity. However, this complexity is simplified if we recognize that their processes evolved harmonically. By learning the fundamental biophysics of aspects of the adaptive immune system, we can establish the basis for the complexities of the immune response. We study these fundamentals through a cornerstone of adaptive immunity: the protein-protein interaction between the specialized receptors of T cells of the immune system and the complex of a peptide presented by a major histocompatibility complex (MHC) protein.

T cell receptors (TCRs) bind the composite interface of peptide/MHC (pMHC) proteins as a necessary first step to the T cell immune response. Many studies of TCR-pMHC interactions have provided considerable insight into the determinants of TCR recognition, including TCR preferences for peptides and the ‘rules’ of TCR binding and subsequent immune responses. These central ideas have been integrated into various approaches to predict TCR specificity and peptide immunogenicity. However, there exist many exceptions to these rules, such as peptide conformational adaptability and alternative TCR engagement.

Here, we use a combination of experimental and computational biophysics techniques to determine the mechanism and minimal determinants of a peptide conformational change and the superantigenic capabilities of the SARS-CoV-2 spike protein. 

As new and further advanced techniques in biophysical analysis arise, especially with the introduction of artificial intelligence in computational methodology, it is imperative that we approach these studies with insight and a realistic understanding of the scope of our research. If we can define the biophysics and inherent dynamics of the proteins that induce an immunological response, we can predict and control the functions of these molecules, with broad implications for immunotherapy and the field of immunology.