cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kcjbbz9gzs.1
title: Solid state NMR data and TEM images from time-resolved experiments on Abeta40 self-assembly

description: 2D solid state NMR spectra and negative stain TEM images of assemblies formed by the 40-residue amyloid-beta (Abeta40) peptide at 1.5 mM concentration after initiation of the self-assembly process by a rapid pH drop from pH 12 to pH 7.4. NMR spectra are included as unprocessed data in Bruker format and as processed data in nmrPipe format. TEM images are tiff files. README.txt files explain the contents of the individual folders.
DOI: 10.17632/hfz543gjc7.1
title: The effect of calcaneus and metatarsal head offloading insoles on healthy subjects’ gait kinematics, kinetics, asymmetry, and the implications for plantar pressure management.

description: Supplementary material: raw data from motion capture cameras, split-belt treadmill force plates, and in-shoe pressure measurement from different insoles at different speeds.
DOI: 10.17632/jbzsz92v23.1
title: p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs. Ferrie et. al.

description: This dataset contains representative movies from the Fluorescence Recovery After Photobleaching (FRAP) and Single Molecule Tracking (SMT) experiments along with the unaltered Western Blot images and ChIP-seq data from Ferrie, J. J., Karr, J. P., Graham, T. G. W., Dailey, G. M., Zhang, G., Tjian, R., and Darzacq, X. "p300 is an Obligate Integrator of Combinatorial Transcription Factor Inputs."
DOI: 10.17632/8f4m768js6.1
title: LINF_350037700

description: cystathione gamma lyase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/tbyyftdds5.1
title: LINF_350038500

description: LRRcap domain-containing protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5xghv2vyhj.1
title: LINF_350038600

description: transport protein particle (TRAPP) subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/cdy8k5pfrh.1
title: LINF_350038800

description: 6-phosphogluconate dehydrogenase | 6PGDH
Leishmania infantum (strain JPCM5)
DOI: 10.17632/hdpgxwpmt5.1
title: Flow cytometry statistical outputs and raw data

description: Flow cytometry output of the analysis of Tmesipteris oblanceolata.
DOI: 10.17632/n3r5v886bs.1
title: Molecular dynamics simulation of the effect of stress on quartz dissolution in acidic and alkaline aqueous solutions

description: The main purpose of the study is to explain the effect of stress on quartz dissolution at a micro scale. The experiment was conducted under temperature and pressure conditions in the formation, and solutions with different pH values were set. The data mainly includes the structural files used in the molecular simulation process (in. xsd format, which can be opened in BIOVIA Materials Studio (MS) software), as well as experimental results.
DOI: 10.17632/mvytxr4f9s.1
title: LDHU3_13.0720

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/9s86gv8762.1
title: Frail older people ageing in place alone in Italy: Use of Information and Communication Technologies (ICTs), perceived loneliness and social isolation

description: The dataset presents some data collected for the study "Inclusive ageing in place” (IN-AGE), funded by Fondazione Cariplo (Italy), Grant N. 2017-0941, and regarding a purposive sample of 120 individuals aged 65 years and over (males and females). It was a cross-sectional qualitative survey which in 2019 was conducted by face-to-face and semi-structured interviews with frail older people without cognitive impairment, living at home, alone or with a private personal care assistant (PCA), in three Italian Regions (Lombardy, Marche, and Calabria). Both urban sites and rural locations were included. The dataset puts in relations how seniors use ICTs, in particular smartphone and tablet/personal computer (PC), their levels of education and physical limitations, in addition to their objective social isolation and subjective perceived loneliness. The difficulties in carrying out the activities of daily life were detected by ADLs and IADLs scales. The use of ICTs was explored by asking which type of device seniors are able to use independently Perceived loneliness was explored by means of open questions (e.g., “Do you feel alone/abandoned?”). Social isolation was assessed with questions on type (e.g., by telephone) and frequency (e.g., daily) of contacts with family, friendship and neighborhood networks, for intimate confidences. A qualitative analysis was conducted following the Framework Analysis Technique (reading of the interviews, identification of categories, construction of thematic chart, and interpretation of results). A manual thematic content analysis was carried out. Qualitative dimensions were also quantifiied, in terms of count of statements, for providing an introductory picture of the explored dimensions. Moreover, further quantitative classifications were provided (by means of Microsoft Excel 2023). The level of physical limitations was assessed with four grades (mild, moderate, high, very high). The perceived loneliness was assessed as presence-absence of this feeling at four levels (absent/mild, moderate, high, very high). The social isolation was assessed as presence/absence of confidants and related daily contacts. Main results showed that smartphone and PC/tablet were used by older respondents mainly to talk with family members, and those more educated and without serious functional limitations are more willing and able to adopt ICTs. Findings also indicate that seniors who know how to use ICTs report mainly low/moderate loneliness, and less social isolation. These results can offer insights for policymakers on policies for mitigating possible loneliness and social isolation of frail seniors with the help of ICTs, also developing adequate e-training programs. The dataset is provided in open format (Microsoft Excel) and includes the following: a “numeric” dataset regarding the unlabelled dimensions used for statistics elaboration; a codebook with the complete variables list and variables labels we used.
DOI: 10.17632/b62jrskmbg.1
title: LDHU3_13.0640

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.qreuf3
title: Occurrence Download

description: A dataset containing 40529 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Apus barbatus (P.L.Sclater, 1866))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 40529 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004369-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/x5k8md26zk.1
title: LDHU3_13.0650

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/4vwrytcp7j.1
title: Effect of Acid Whey Protein Concentrate on the Rheological Properties, Antioxidant Capacities, and Biological Activities of Bioaccessible Fractions in Fermented Camel Milk

description: The production of set-type camel milk yogurt is challenging due to its unique physicochemical properties, which differ from those of other milk species. The present study aimed to evaluate the effects of camel milk supplementation with different levels (0, 3, and 6%) of whey protein concentrate (WPC) on the texture, rheological properties, antioxidant capacity, and biological activity of camel milk yogurt compared to bovine milk (BM) yogurt. These characteristics were evaluated before and after in vitro digestion of yogurt samples after 1 and 15 days of storage at 4°C. The results show that using WPC, particularly at 6% (WPCA6), significantly affected the characteristics of yogurt. The water-holding capacity increased by increasing the level of WPC and showed higher values than BM yogurt. Furthermore, the adhesiveness in yogurt samples containing 6% of WPC was significantly higher than other treatments, representing 6.3 and 6.1 mJ after 1 and 15 days, respectively. The apparent viscosity of WPCA6 was also higher than other yogurt treatments at different shear rates throughout storage, indicating a thicker and more viscous yogurt. Camel milk yogurt showed higher DPPH values, representing 74.1, 71.6, and 78.1% for WPCA0, WPCA3, and WPCA6, respectively, compared to BM yogurt (22.9%). The biological activities, including α-amylase, α-glucosidase, and angiotensin-converting enzyme inhibitions, increased after in vitro digestion of yogurt samples. Principal component analysis underscored the distinct bioactive profile of WPCA6, distinguishing it from other yogurt treatments and highlighting its superior properties.
DOI: 10.17632/87tk4htfkv.1
title: LDHU3_13.0770

description: PSP1 C-terminal conserved region containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/v5y6crjrvz.1
title: LDHU3_13.0740

description: U-box domain containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/pvjvcmz9c6.1
title: Influence of growth promoters on anaerobic digestion of cattle manure

description: This study aimed to evaluate the influence of synthetic and natural additives on the stability and production of biogas and methane resulting from the anaerobic digestion of cattle manure in batch and semi-continuous digesters.
DOI: 10.17632/2zf4rmvfdm.1
title: LDHU3_13.0750

description: Mannose-specific lectin; Leishmania donovani (HU3 strain)
DOI: 10.17632/t6bmr8thbc.1
title: Data for Numerical Simulation on the Influence of the Distribution Characteristics of Cracks and Solution Cavities on the Wellbore Stability in Carbonate Formation

description: This data is for the paper "Numerical Simulation on the Influence of the Distribution Characteristics of Cracks and Solution Cavities on the Wellbore Stability in Carbonate Formation", the study area is The Dengying Formation carbonate reservoir of the Gaoshiti–Moxi area in the Sichuan Basin sits within the Gaoshiti-Anpingdian-Moxi latent tectonic zone. These data is for three tables and six figures.
DOI: 10.17632/yzybyp83j5.1
title: Data for: Optimization and validation of RUSLE model in karst areas
DOI: 10.17632/zr66mv7577.1
title: Ultra-Thin Silver Nanowires

description: Source data for the publication: Ultra-Thin Silver Nanowires Synthesis in Pore-Confined Space of Mesoporous Silica Thin Film. Electrochemical measurements (.mpr and .mpt files), and transmission electron microscopic pictures (.jpg).
DOI: 10.17632/fh6xrhxg9d.1
title: Recent Submarine mass transport along the continental slope of the SE Mediterranean

description: Supplementary datal to Katz, O., Almogi-Labin, A., Hyams-Kaphzan, O., 2025 (Marine Geology):
Stratigraphy and chronology of recent submarine mass transport along the continental slope of the southeastern Mediterranean Sea with applications to marine geohazard.

Down-core laboratory analysis of the studied cores, including planktic foraminiferal abundance, radiocarbon ages, oxygen isotopes, total organic carbon, and particle size distribution mode for (a) Core AM113; (b) Core AM149; (c) Core AM015; and (d) Core AM137.
DOI: 10.17632/d8j63tw4js.1
title: COVID-19: Moderating role of perceived efficacy of prevention measures in the mental health prediction

description: SPSS data (cross-sectional) of a research about the moderating role of the perceived efficacy of COVID-19 preventive measures on the link between perceived risk and mental health (stress and depression) are provided. Perceived efficacy acted as a protective factor for stress and depression by decreasing the negative impact that perceived risk has on both variables related to mental distress, i.e. stress and depression.
DOI: 10.17632/n59vmfkj98.1
title: LDHU3_19.0050

description: Histone H2B; Leishmania donovani (HU3 strain)
DOI: 10.17632/7gsxbbv2fy.1
title: LDHU3_19.0040

description: Histone H2B; Leishmania donovani (HU3 strain)
DOI: 10.17632/hss9gb6gr6.1
title: Heat stimuli test by infrared reveals rosacea as a heat sensitive skin disorder

description: Sun exposure was proved to be possible precipitating factor for rosacea. In our study, we determined infrared heat alone could provoke the disease by inducing significant blood flow-mediated vasodilation, independently from ultraviolet. We suggest a physical sunlight protection that blocks both UV exposure and heat for daily protection of rosacea.
DOI: 10.17632/hss9gb6gr6.2
title: Heat stimuli test by infrared reveals rosacea as a heat sensitive skin disorder

description: Sun exposure was proved to be possible precipitating factor for rosacea. In our study, we determined infrared heat alone could provoke the disease by inducing significant blood flow-mediated vasodilation, independently from ultraviolet. We suggest a physical sunlight protection that blocks both UV exposure and heat for daily protection of rosacea.
DOI: 10.17632/jrz7jcfbr8.1
title: Data for: Key role of surface defects in the multiaxial fatigue life of additively manufactured unmachined 18Ni300 maraging steel. Int J Fatigue, 184

description: The file includes the fatigue test results conducted on AM unmachined 18Ni300 maraging steel. The specimens were tested under fully reversed force/torque-controlled constant amplitude sinusoidal loading. The tests included uniaxial, torsional, in-phase, and out-of-phase axial-torsional loading paths. More details can be found at https://doi.org/10.1016/j.ijfatigue.2024.108319.
This research was funded by National Science Centre, Poland [2021/41/B/ST8/00 257]
DOI: 10.17632/6wzfkwxhnf.2
title: Phosphatidylserine Synthase in the Endoplasmic Reticulum of Toxoplasma is Essential for its Lytic Cycle in Human Cells

description: Data belonging to the manuscript "Phosphatidylserine Synthase in the Endoplasmic Reticulum of Toxoplasma gondii is Essential for its Lytic Cycle in Human Host Cells" by Dimitrios Alexandros Katelas, Rosalba Cruz Miron, Ruben D. Arroyo-Olarte, Jos F. Brouwers, Ratnesh Kumar Srivastav, Nishith Gupta. Data consist of UPLC-HRAMS data of lipids and the resulting MSDial result file.
DOI: 10.17632/nhryj22shv.1
title: LDHU3_19.0030

description: Histone H2B; Leishmania donovani (HU3 strain)
DOI: 10.17632/3t9b7w96mv.1
title: LDHU3_19.0080

description: DnaJ domain-containing protein | JDP15 | J15; Leishmania donovani (HU3 strain)
DOI: 10.17632/dgpfssx559.1
title: LDHU3_19.0070

description: Peroxin 13 | PEX13.1; Leishmania donovani (HU3 strain)
DOI: 10.17632/n7fddtyvpb.1
title: LDHU3_19.0060

description: 40S ribosomal protein S2 | uS5; Leishmania donovani (HU3 strain)
DOI: 10.17632/328j74vtzb.1
title: Multifaceted atlases of the human brain in its infancy

description: Open access Nature Methods article "Multifaceted atlases of the human brain in its infancy".
DOI: 10.17632/wm7p38cnwf.1
title: GeoHealth_Pb_dataset

description: Dataset used in publication of Peters et al. (2022)
DOI: 10.17632/n3r5v886bs.2
title: Molecular dynamics simulation of the effect of stress on quartz dissolution in acidic and alkaline aqueous solutions

description: The main purpose of the study is to explain the effect of stress on quartz dissolution at a micro scale. The experiment was conducted under temperature and pressure conditions in the formation, and solutions with different pH values were set. The data mainly includes the structural files used in the molecular simulation process (in. xsd format, which can be opened in BIOVIA Materials Studio (MS) software), as well as experimental results.
DOI: 10.17632/vs2g9cdfx4.1
title: Data: Leino et al. 2024 - Pollution-related changes in nest microbiota: Implications for growth and fledging in three passerine birds

description: In our study titled ‘Pollution-related changes in nest microbiota: Implications for growth and fledging in three passerine birds’ (manuscript submitted in April 2024), we investigated the connections between metal pollution, bird nest microbiota, and bird fitness. 

The attached folder ‘Leino etal2024_Nest_Phyloseq_object_publ.zip’ contains an R-compatible phyloseq object with microbial reads data, taxonomy table, and sample metadata used in this study. A separate PDF 'Leino2024_Nest Phyloseq object clarifications' clarifies variable abbreviations used in the sample metadata.
DOI: 10.17632/kfr247v7sn.1
title: Transient caspase-mediated activation of Caspase-Activated DNase causes DNA damage required for phagocytic macrophage differentiation. Maurya et al.

description: Data sets used for statistical analysis are shown in the graphs in the Maurya et al. manuscript.
DOI: 10.17632/h5p6mgych7.1
title: Research data for 'Guidance on large scale hydrologic model calibration with isotope tracers'

description: Research data and code for "Guidance on large scale hydrologic model calibration with isotope tracers", Holmes, T., Stadnyk, T., Asadzadeh, M., and Gibson, J.J. (2023). 
MC:
• Data:
o Random parameter values (rand_par_set.mat)
o Calculated performance metric values (Qstats_allMC.mat and ISOstats_allMC.mat)
 Unprocessed time-series stored but are approximately 100GB for MC alone
• Scripts/code:
o Generate parameters (MC_atha.m)
o Data extract from raw output (MC_datareader_VM.m)
o Calculate performance, used on extracted time-series
 Script loading t-series files and calling perf function (QstatsCalc_script.m IsostatsCalc_script.m)
 Performance stats calculating functions (QstatsCalc.m, ISOstatsCalcv2.m)
o Identifiability (GLUE_script_v2.m, GLUE_script_ISO_v2.m)
 Normalize parameters (normalize_pars.m)
o Non-dominated filtering (surviving example for 3 flow objectives: nondom_script.m, DominanceFilter.m written by Dr Asadzadeh)

VARS:
• Data:
o Sampled parameter values (200stars.xlsx)
o Calculated performance metric values (Qresp_all.mat, I2Hresp_all_new.mat, I18Oresp_all_new.mat, IsoSlopeStats_all_new.mat)
o VARS output (VARS HQ for cal.mat)
o IVARS50 results copied to excel (IVARS50 for HQ.xlsx)
• Scripts/code/input files:
o STAR sampling input (factorSpace.txt, VARS_inp.txt)
o Data extract from raw output (data_process_script.m, completed in stages)
o Calculate performance (QstatScript.m, I2HstatScript.m, I18OstatScript.m, SlopeRespScript.m, ISOrespFrameCalc.m, QstatsCalc.m, ISOrespCalc.m)
o Combine performance as response variable (calHQavg_script.m)

MOO:
• Data:
o Non-dominated solutions (Ost out, ND solutions in .xlsx by objective and output files for each trial; ISOstats and Qstats.m files contain performance stat results)
o Behavioral hydrographs and tracer (all time series files provided here, BIDpars/second objective/set internal ID number, spl contains flow data, iso_2H and iso_18O isotope time series, tracer contains virtual tracer results)
o Ensemble performance (ensembleStatsBIDv2.xlsx)
• Scripts/code/input files:
o OST input files (Init files, with all OSTRICH initial files)
o Data extract from raw output (MC_datareader_VM.m, MC_extract_script.m as sample)
o Calculate performance (Optimization version: statscript.R, final summary: NONDom_stat_script.m)
o Ensemble evaluations (BID_ensemble_statsv2.m)
DOI: 10.17632/7wkwn9vw3f.1
title: A hyper-quiescent chromatin state formed during aging is reversed by regeneration

description: All source data (except genomics and raw mass spec data) associated with "A hyper-quiescent chromatin state formed during aging is reversed by regeneration" including image files, excel files etc.
DOI: 10.17632/mzxtfxfh8r.1
title: Data for: Temperature controlled Se-S isotope fractionation during seawater mixing and sulfide precipitation in black smoker chimneys

description: This dataset contains the data tables and supplementary tables of the related study of chimney sulfides from the Nifonea black smoker vent field, SW Pacific. The data comprises in-situ major element (EPMA) and trace element (LA-ICPMS) analyses of sulfides. Furthermore powders of micro-domains of chimney sulfides and fresh basaltic glass were analysed for the Se concentration (by HG-AFS), for S isotopes (by EA-IRMS), and for Se isotopes (by HG-MC-ICP-MS).
DOI: 10.17632/55znfkp7x6.2
title: Dataset in: Connected in diversity: isotopic analysis refines provenance for Islamic plant-ash glass from the eastern Silk Roads

description: This is the original chemical and Sr-Nd-Pb isotopic data for glass fragments from Shadyakh, Nishapur, Iran, analyzed with LA-ICP-MS and MC-ICP-MS. The data are used in the article "Connected in diversity: isotopic analysis refines provenance for Islamic plant-ash glass from the eastern Silk Roads", which was submitted to iScience.
DOI: 10.17632/55znfkp7x6.1
title: Dataset in: Connected in diversity: isotopic analysis refines provenance for Islamic plant-ash glass from the eastern Silk Roads

description: This is the original chemical and Sr-Nd-Pb isotopic data for glass fragments from Shadyakh, Nishapur, Iran, analyzed with LA-ICP-MS and MC-ICP-MS. The data are used in the article "Connected in diversity: isotopic analysis refines provenance for Islamic plant-ash glass from the eastern Silk Roads", which was submitted to iScience.
DOI: 10.17632/b8znckddgf.1
title: Final Dataset for Neural Network Models included in Project RF-2016-02364081 Final Report. Short Title: "A generalized prediction framework of preterm birth"

description: Scaled input dataset for training the Long Short-Term Memory (LSTM) recurrent neural networks for prediction of gestational age at birth developed and included in the RF-2016-02364081 project titled "A generalized prediction framework of preterm birth: The combination of maternal risk factors, fetal and newborn functional and structural brain connectivity for predicting neurodevelopmental outcome".
DOI: 10.17632/jxgf4n3y6s.1
title: In Silico Database of In Vitro Tested Antiviral Compounds

description: Antivirals are drugs used to treat viral diseases by inhibiting the infection or replication of viruses. With the wide variety of viruses, it is crucial to constantly find new antiviral options. One approach is to reposition existing drugs, which is a more cost-effective and faster method than traditional research and development. The problem is that there is a lack of organized and standardized data on these drugs. This work aims to address this issue by creating a database of in vitro-tested antivirals. The information and compounds were collected from published in vitro antiviral studies. The database includes six different file formats (SMILES, MOL, SDF 2D, MOL2, PDB, and PDBQT) and categorizes the compounds based on their antiviral activity.
DOI: 10.17632/jxgf4n3y6s.2
title: In Silico Database of In Vitro Tested Antiviral Compounds

description: Antivirals are drugs used to treat viral diseases by inhibiting the infection or replication of viruses. With the wide variety of viruses, it is crucial to constantly find new antiviral options. One approach is to reposition existing drugs, which is a more cost-effective and faster method than traditional research and development. The problem is that there is a lack of organized and standardized data on these drugs. This work aims to address this issue by creating a database of in vitro-tested antivirals. The information and compounds were collected from published in vitro antiviral studies. The database includes six different file formats (SMILES, MOL, SDF 2D, MOL2, PDB, and PDBQT) and categorizes the compounds based on their antiviral activity.
DOI: 10.17632/jyzp2j6xb8.1
title: LDHU3_13.0820

description: Calcium-activated chloride channel; Leishmania donovani (HU3 strain)
DOI: 10.17632/yj4kyx2g49.1
title: LDHU3_13.0810

description: Ubiquitin-like protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/wm7p38cnwf.2
title: GeoHealth_Pb_dataset

description: Dataset used in publication of Peters et al. (2022)