cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5125468.v1
title: Supplementary Material for: Live-Supervision: Vom Einwegspiegel zur videobasierten Online-Supervision

description: Live-Supervision ermöglicht dem Supervisor, Einblicke in eine laufende Therapiesitzung zu erhalten und in diese beratend einzugreifen. Die direkte Rückmeldung des Supervisors an den Supervisanden stellt dabei ein wichtiges Unterscheidungsmerkmal zu nachträglichen Supervisionsformen dar. In den letzten 60 Jahren wurden verschiedene Formen der Live-Supervision entwickelt, die im Rahmen dieser Arbeit in Hinblick auf ihre Praktikabilität, Akzeptanz und Effektivität diskutiert werden. Aufgrund der vielen Vorteile von videobasierter Live-Supervision («bug-in-the-eye», BITE) wird in dem aktuellen Beitrag ein besonderes Augenmerk auf diese neueste Entwicklung der Live-Supervision gelegt. Während einer BITE-Supervisionssitzung verfolgt der Supervisor die Therapie online über eine Videokamera und hat die Möglichkeit, über einen Monitor direkte Hinweise an den Therapeuten zu geben. Bei diesem Supervisionsformat ist es dem Supervisor möglich, die Supervision andernorts via Internet durchzuführen. In der vorliegenden Arbeit werden konkrete Hinweise für die Durchführung einer BITE-Supervisionssitzung gegeben. Zudem werden auf der Basis von 25 BITE-Sitzungen erste Ergebnisse einer Studie zur Akzeptanz dieses Verfahrens berichtet. Hierbei zeigte sich, dass die Akzeptanz von BITE-Supervision bei Therapeuten, Supervisoren und Patienten sehr hoch ist und diese als nützlich und hilfreich eingeschätzt wird. Abschließend wird diskutiert, auf welche Weise BITE-Supervision in die Psychotherapieausbildung integriert werden könnte.
DOI: 10.6084/m9.figshare.14715137.v2
title: Additional file 21 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 21: Table S20. Overlap of negatively correlated genes to CBS in CCLE (q-value &lt; 0.05) with MSigDB hallmark gene sets (q-value &lt; 0.01).
DOI: 10.6084/m9.figshare.14715146.v2
title: Additional file 24 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 24: Table S23. Top 20 pathways in the MSigDB overlap (q-value &lt; 0.01) of differentially expressed genes in CBS-deficient mouse gastric tissue.
DOI: 10.6084/m9.figshare.14715161.v2
title: Additional file 4 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 4: Table S3. List of downregulated genes at protein level in the discovery set of CIMP vs non-CIMP cell lines (P &lt; 0.05).
DOI: 10.6084/m9.figshare.14715164.v2
title: Additional file 5 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 5: Table S4. Protein data (LFQ intensities) for the discovery set of CIMP and non-CIMP cell lines.
DOI: 10.6084/m9.figshare.14715170.v2
title: Additional file 7 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 7: Table S6. CBS promoter methylation levels and gene expression in expanded GC cell line cohort.
DOI: 10.4121/5e40ecd6-98c4-423c-bd1c-d24f0f7a7a59.v3
title: 20211109 20211215 Main deployment - Nearshore - RealDune/REFLEX

description: Nearshore field measurements of the main November - December deployment of the RealDune/REFLEX experiments at the Dutch coast in Autumn/Winter 2021/2022. The lidar and GoPro data are stored separately. This dataset is part of the data collection 'Nearshore coastal measurements of calm, moderate, and storm conditions at two artificial dunes along the Dutch Coast during the RealDune/REFLEX experiments'.
DOI: 10.6084/m9.figshare.7374962
title: Additional file 4: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Functional enrichment analyses of miRNA targets based on gene ontology (GO). (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.7374935
title: Additional file 2: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: MiRNA families identified in the leaves and SAM of the maize H4 and NIL inbred lines. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7375190
title: Additional file 6: of The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

description: List of annotated aquaporin genes in Gerris buenoi including gene names and closest identity. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.12617684
title: Additional file 2 of LAIR-1 overexpression inhibits epithelial–mesenchymal transition in osteosarcoma via GLUT1-related energy metabolism

description: Supplementary Table 1. The RNA-seq analysis details.
DOI: 10.6084/m9.figshare.13141927
title: Additional file 1 of Drought-hardening improves drought tolerance in Nicotiana tabacum at physiological, biochemical, and molecular levels

description: Additional file 1 : Online Resource 1. Reagents list. Online Resource 2. Genes-specific primers list for qRT-PCR. Data Set 1. Raw data for plant growth, leaf water potential, chlorophyll fluorescence, and multicolor fluorescence analysis. Data Set 2. Raw data for biochemical analysis. Data Set 3. Raw data for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.13141927.v1
title: Additional file 1 of Drought-hardening improves drought tolerance in Nicotiana tabacum at physiological, biochemical, and molecular levels

description: Additional file 1 : Online Resource 1. Reagents list. Online Resource 2. Genes-specific primers list for qRT-PCR. Data Set 1. Raw data for plant growth, leaf water potential, chlorophyll fluorescence, and multicolor fluorescence analysis. Data Set 2. Raw data for biochemical analysis. Data Set 3. Raw data for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.7374995
title: Additional file 2: of Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection

description: Table S1. The Cd accumulation in grain of the 312 rice accession in the present study. (XLSX 34â kb)
DOI: 10.6084/m9.figshare.7374980
title: Additional file 5: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Differentially expressed miRNAs in leaves and SAM between H4 and NIL. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.13141973.v1
title: Additional file 2 of NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis

description: The NIMBus model can flexibly be retrained and run using a new set of covariates, sequencing results, and target regions. Instructions and software are provided for this purpose at github.gersteinlab.org/nimbus.
DOI: 10.6084/m9.figshare.7374956.v1
title: Additional file 3: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Predicted targets of known and novel miRNAs. (XLSX 372Â kb)
DOI: 10.6084/m9.figshare.12617835
title: Additional file 1 of Anthocyanin, a novel and user-friendly reporter for convenient, non-destructive, low cost, directly visual selection of transgenic hairy roots in the study of rhizobia-legume symbiosis

description: Additional file 1: Table S1. Anthocyanin accumulation on transgenic hairy roots containing 35S:: AtMyb75 in various soybean cultivars. Data were obtained by three independent experiment with at least infected 8 seedlings.
DOI: 10.6084/m9.figshare.12617835.v1
title: Additional file 1 of Anthocyanin, a novel and user-friendly reporter for convenient, non-destructive, low cost, directly visual selection of transgenic hairy roots in the study of rhizobia-legume symbiosis

description: Additional file 1: Table S1. Anthocyanin accumulation on transgenic hairy roots containing 35S:: AtMyb75 in various soybean cultivars. Data were obtained by three independent experiment with at least infected 8 seedlings.
DOI: 10.6084/m9.figshare.24152449
title: Additional file 2 of ARF6 promotes hepatocellular carcinoma proliferation through activating STAT3 signaling

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.24152449.v1
title: Additional file 2 of ARF6 promotes hepatocellular carcinoma proliferation through activating STAT3 signaling

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.7374980.v1
title: Additional file 5: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Differentially expressed miRNAs in leaves and SAM between H4 and NIL. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.12617889
title: Additional file 2 of Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

description: Additional file 2: Table S1A. Sample information for the WGBS; Table S1B. Sample information for the RNA sequencing; Table S1C. Sample information for the whole genome sequencing; Table S2. Comparison of methylation statistics between two different cattle reference assemblies. Table S3. DMC and DMR number for each comparison pairs. Please note that the numbers, which may be affected by different common data amount for each tissue. Table S4. PMD information for different samples. Table S5. Placenta PMD percentages and genes located in the shared and lineage-specific placenta PMDs between cattle and human. Table S6. GO analyses for genes shared or specific in PMDs between human placenta and cattle placenta. Table S7. Gene ontology analysis for genes overlapping with cattle placenta HMD. Table S8. GO analysis for the genes overlapped with cattle placenta PMDs. Table S9. Information of 16 non-blood DNA methylation level drops. Table S10. Differentially methylated TSS-HMR between human and cattle. Table S11. Gene ontology analysis for genes totally located in the HMR. Table S12. common twin genes in one HMR core region between cattle and human. Table S13. Gene ontology analyses for genes specifically high expressed in different tissues. Table S14. Information for experimentally supported CpG Islands.
DOI: 10.6084/m9.figshare.7374995.v1
title: Additional file 2: of Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection

description: Table S1. The Cd accumulation in grain of the 312 rice accession in the present study. (XLSX 34â kb)
DOI: 10.6084/m9.figshare.7375031
title: Additional file 11: of The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

description: List of antioxidant enzyme genes identified in the Gerris buenoi genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7374956
title: Additional file 3: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Predicted targets of known and novel miRNAs. (XLSX 372Â kb)
DOI: 10.6084/m9.figshare.7375304
title: Additional file 1: of Effects of PKM2 on global metabolic changes and prognosis in hepatocellular carcinoma: from gene expression to drug discovery

description: Table S1. Differentially expressed genes in high-PKM2 group. Table S2. Differentially expressed genes in low-PKM2 group. Table S3. Descriptive statistics of PKM2 and other clinical features grouped by hierarchical clustering. Table S4. Multivariate logistic regression between PKM2 and hierarchical clustering groups with adjusted covariates. Table S5. Details of gene set enrichment analysis in high-PKM2 vs. controls, low-PKM2 vs. controls and high-PKM2 vs. low-PKM2. Table S6. Correlation between PKM2 and metabolic genes in high-PKM2 group. Table S7. Correlation between PKM2 and metabolic genes in low-PKM2 group. Table S8. Survival analysis of up-regulated and PKM2-positively correlated metabolic genes. Table S9. Survival analysis of down-regulated and PKM2-negatively correlated metabolic genes. Table S10. Interaction of PKM2 and PKM2-uncorrelated metabolic genes on patientsâ overall survival. Table S11. Transcriptional regulation relationships of key metabolic genes. Table S12. Information of key metabolic genes and drugs. Table S13. Predicted compounds that affect risk metabolic genes by L1000CDS2 web tools. (XLSX 794 kb)
DOI: 10.6084/m9.figshare.7374962.v1
title: Additional file 4: of MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition

description: Functional enrichment analyses of miRNA targets based on gene ontology (GO). (XLSX 27Â kb)
DOI: 10.6084/m9.figshare.13141973
title: Additional file 2 of NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis

description: The NIMBus model can flexibly be retrained and run using a new set of covariates, sequencing results, and target regions. Instructions and software are provided for this purpose at github.gersteinlab.org/nimbus.
DOI: 10.6084/m9.figshare.13142518
title: Morroniside protects HT-22 cells against oxygen-glucose deprivation/reperfusion through activating the Nrf2/HO-1 signaling pathway

description: Neonatal hypoxic-ischemic encephalopathy (HIE) is a devastating condition that affects neurodevelopment and results in brain injury in infants. Morroniside (MOR), a natural secoiridoid glycoside, has been found to possess neuroprotective effect. However, the effects of MOR on neonatal HIE are unclear. An <i>in vitro</i> HIE model was established in murine hippocampal neurons HT-22 cells using oxygen-glucose deprivation/reoxygenation (OGD/R) stimulation. Our results showed that MOR improved OGD/R-caused cell viability reduction in HT-22 cells. MOR suppressed the production of reactive oxygen species (ROS) and malondialdehyde (MDA) in OGD/R-induced HT-22 cells in a dose-dependent manner. The activities of superoxide dismutase (SOD) and glutathione peroxidase (GP<sub>X</sub>) were significantly elevated by MOR. Moreover, MOR treatment caused a significant increase in bcl-2 expression, and obvious decreases in the expression levels of bax, cleaved caspase-3, and cleaved caspase-9 expression. Furthermore, MOR significantly upregulated the expression levels of nuclear Nrf2 and HO-1 in OGD/R-treated HT-22 cells. Additionally, knockdown of Nrf2 or HO-1 abrogated the effects of MOR on OGD/R-induced oxidative stress and apoptosis in HT-22 cells. In conclusion, these findings suggested that MOR protects HT-22 cells against OGD/R <i>via</i> regulating the Nrf2/HO-1 signaling pathway.
DOI: 10.6084/m9.figshare.13142557
title: Establishment of a survey method to determine rice stigma length from preparation, sampling, and preservation to measurement

description: The lack of a unified standard for sampling stage, preservation and measurement of stigma length is the main restriction factor for the study of stigma length trait in rice. In this study, stigma lengths were compared among four different developmental stages (T1-T4) of 30 rice materials under two environments (years) and in 10 measurement periods (D1-D120) of 3 rice materials after treatment with 6 fixatives (S1–S6), and finally the results revealed that the T3 were the best sampling stage and the S6 was the most suitable fixative for stigma length. This study thoroughly describes the process for surveying and measuring stigma length in 6 steps: preparation before sampling, flower sampling, focusing, flower dissection and imaging, obtaining measurements, and data analysis. These findings provide an outline of the methodology for the discovery, fine mapping, and functional analysis of the genes that control the stigma length trait.
DOI: 10.6084/m9.figshare.13142128
title: Additional file 1 of Investigating effects of preoperative inflammatory biomarkers on predicting survival outcomes of intrahepatic cholangiocarcinoma after curative resection

description: Additional file 1.
DOI: 10.6084/m9.figshare.7375031.v1
title: Additional file 11: of The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

description: List of antioxidant enzyme genes identified in the Gerris buenoi genome. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.12617889.v1
title: Additional file 2 of Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns

description: Additional file 2: Table S1A. Sample information for the WGBS; Table S1B. Sample information for the RNA sequencing; Table S1C. Sample information for the whole genome sequencing; Table S2. Comparison of methylation statistics between two different cattle reference assemblies. Table S3. DMC and DMR number for each comparison pairs. Please note that the numbers, which may be affected by different common data amount for each tissue. Table S4. PMD information for different samples. Table S5. Placenta PMD percentages and genes located in the shared and lineage-specific placenta PMDs between cattle and human. Table S6. GO analyses for genes shared or specific in PMDs between human placenta and cattle placenta. Table S7. Gene ontology analysis for genes overlapping with cattle placenta HMD. Table S8. GO analysis for the genes overlapped with cattle placenta PMDs. Table S9. Information of 16 non-blood DNA methylation level drops. Table S10. Differentially methylated TSS-HMR between human and cattle. Table S11. Gene ontology analysis for genes totally located in the HMR. Table S12. common twin genes in one HMR core region between cattle and human. Table S13. Gene ontology analyses for genes specifically high expressed in different tissues. Table S14. Information for experimentally supported CpG Islands.
DOI: 10.6084/m9.figshare.12617885.v1
title: Additional file 1 of Rapid exacerbation featuring acute leukemoid reaction after retrolaparoscopic nephrectomy: a rare case report of renal cell carcinoma with postoperative comprehensive genomic profiling

description: Additional file 1: Supplemental 1
DOI: 10.6084/m9.figshare.12617684.v1
title: Additional file 2 of LAIR-1 overexpression inhibits epithelial–mesenchymal transition in osteosarcoma via GLUT1-related energy metabolism

description: Supplementary Table 1. The RNA-seq analysis details.
DOI: 10.6084/m9.figshare.7375061.v1
title: Additional file 1: of The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

description: Supplementary Online Information. Additional files 10 and 11. (ZIP 18100 kb)
DOI: 10.6084/m9.figshare.7375052
title: Additional file 1: of The combination of procalcitonin and C-reactive protein or presepsin alone improves the accuracy of diagnosis of neonatal sepsis: a meta-analysis and systematic review

description: Table S1. The characteristics of the studies included. Table S2. The characteristics of the studies included. Table S3. Pair-wise comparisons between modalities for sensitivity, specificity, PLR, NLR, and AUC. Table S4. The result of meta-regression and subgroup analysis for PCT. Table S5. The result of meta-regression and subgroup analysis for CRP. Table S6. The result of meta-regression and subgroup analysis for presepsin. Table S7. Subgroup analysis of region and detection method for PCT and CRP. Table S8. Subgroup analysis of region and cutoff level for PCT and CRP. Table S9. Subgroup analysis of cutoff level for PCT and CRP. Table S10. Sensitivity analyses of PCT, CRP, PCTâ +â CRP, and presepsin. (ZIP 100 kb)
DOI: 10.6084/m9.figshare.7375052.v1
title: Additional file 1: of The combination of procalcitonin and C-reactive protein or presepsin alone improves the accuracy of diagnosis of neonatal sepsis: a meta-analysis and systematic review

description: Table S1. The characteristics of the studies included. Table S2. The characteristics of the studies included. Table S3. Pair-wise comparisons between modalities for sensitivity, specificity, PLR, NLR, and AUC. Table S4. The result of meta-regression and subgroup analysis for PCT. Table S5. The result of meta-regression and subgroup analysis for CRP. Table S6. The result of meta-regression and subgroup analysis for presepsin. Table S7. Subgroup analysis of region and detection method for PCT and CRP. Table S8. Subgroup analysis of region and cutoff level for PCT and CRP. Table S9. Subgroup analysis of cutoff level for PCT and CRP. Table S10. Sensitivity analyses of PCT, CRP, PCTâ +â CRP, and presepsin. (ZIP 100 kb)
DOI: 10.7488/78eeb069-cb34-4e35-93d8-ec507b0fbde6
title: Feline_biobank

description: ## Access ##
This dataset is held in the Edinburgh DataVault, directly accessible only to authorised University of Edinburgh staff. External users may request access to a copy of the data by contacting the Principal Investigator, Contact Person or Data Manager named on this page. University of Edinburgh users who wish to have direct access should consult the information about retrieving data from the DataVault at: https://www.ed.ac.uk/is/research-support/datavault .
description: Excel phenotype files corresponding to cats genotyped by the feline biobank.
DOI: 10.6084/m9.figshare.14715035
title: Additional file 3 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids

description: Additional file 3: Table S2. Select microbiological cases that have overlapping features with cancer presentations.
DOI: 10.6084/m9.figshare.14715041.v1
title: Additional file 5 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids

description: Additional file 5: Table S4. Verification cohort.
DOI: 10.21410/7e4/sfcsas
title: The Emergence of Autonomist Politics: European Radicalism after the Extreme Left, 1976-1985: reading notes

description: This transnational and comparative work studies the European autonomist and protest movements of the late Seventies and early Eighties in major European cities (Rome, Milan, Zürich, West Berlin, Frankfurt). It aims at analysing: -what their contributions to political culture, youth identity formation, and governance institutions were. - to what extent the concepts, practices, and organizational forms of militants identifying as autonomists actually converged - to what extent autonomists generated convergent responses from institutions, officials, New Left political parties, trade unions, media institutions, and the police - why the events in Italy generate the highest transnational resonances in Switzerland and West Germany and less impact in France - how these aspects generate scholarly revisions to our understandings of the dynamics and impacts of youth subcultures and radical politics after 1968.
DOI: 10.21410/7e4/sfcsas/2bvsym
title: Provenzano. AutPo Review Essay Literature Review.pdf

description: :unav
DOI: 10.21410/7e4/sfcsas/eychir
title: Provenzano. AutPo Reading Notes.docx

description: :unav
DOI: 10.6084/m9.figshare.14715041
title: Additional file 5 of Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids

description: Additional file 5: Table S4. Verification cohort.