cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5764641.v1
title: Subject data

description: Data for study on adaptation of muscle activity during split-belt walking. <br>Publication title: "Corrective muscle activity reveals subject-specific sensorimotor recalibration"<br>Pitt-SML lab<br><br>The main code for analysis is uploaded and can also be found at: <br>https://github.com/PittSMLlab/splitbelt-EMG-adaptation<br>Verified to work with the March 5th 2019 version, commit: 2cb14b4268932b15dc96ffd77bbfcfb06cd36f48<br><br>In turn, the code relies on two toolboxes. One by Pitt's SML Lab:<br>https://github.com/PittSMLlab/labTools<br>Verified to work with the March 5th 2019 version, commit: 5116e47e10958078ed4a650a8b6c9dddf73f8699<br><br>And the other by Pablo Iturralde: (this code is a sub-module of the previous toolbox too)<br>https://github.com/pabloi/pi-tools<br>Verified to work with the March 5th 2019 version, commit: ed6e58ed391c554a4a32ce3a057aceed4e577ab0
DOI: 10.6084/m9.figshare.6740729.v1
title: Data Citation 8

description: Summarized HI table for influenza A/H3N2<br>
DOI: 10.17632/hv5fg5r869
title: Data on Growth, Survivability, Water quality and Hemato-biochemical Indices of Nile Tilapia (Oreochromis niloticus) Fry Fed with Selected Marine Microalgae

description: Figure 1 data described the percentage of specific growth rate (SGR) and survival rate of Nile Tilapia (Oreochromis niloticus) fry cultured in different treatments. Figure 2, 3, and 4 showed the red blood cell, white blood cell and hemoglobin level of Nile Tilapia (Oreochromis niloticus) fry fed with different percentage (0, 25 and 50) of Tetraselmis sp. and Nannochloropsis sp. respectively. Figure 5, 6 and 7 describe the percentage of packed cell volume, lymphocytes and level of platelet of Nile Tilapia (Oreochromis niloticus) fry fed with different percentage (0, 25 and 50) of Tetraselmis sp. and Nannochloropsis sp. respectively. Table 1 data describe the physical and chemical parameters such as temperature (°C), dissolve oxygen (DO) (mg/L), pH, total ammonia nitrogen (TAN) (mg/L), nitrite nitrogen (NO2-N) (mg/L) and soluble reactive phosphorus (SRP) (mg/L) for the different treatments during the experimental period. Table 2 data described the different concentration of serum biochemical parameters, such as total protein, albumin, globulin, albumin and globulin (A/G) ratio, blood glucose, triglyceride, cholesterol, urea, and blood urea nitrogen level of Nile Tilapia (Oreochromis niloticus) fry feed with different concentration of Tetraselmis sp. and Nannochloropsis sp.
DOI: 10.17632/v9krcvzv27
title: Soil profile photograph dataset

description: Soil profile photograph dataset from Central Mexico to delineate horizons and quantify coarse fragments
DOI: 10.6084/m9.figshare.19064075.v1
title: Processed TCGA expression data

description: Processed TCGA expression data
DOI: 10.6084/m9.figshare.28579106.v1
title: AdvancesComplexThinkingNeurotechnologiesEducation_PrimaryStudies

description: Group of studies that apply primary methods for research questions on complex thinking and neurotechnologies in education.
DOI: 10.6084/m9.figshare.3388903.v1
title: Tables in csv format

description: csv files created from this Google Sheets https://docs.google.com/spreadsheets/d/1-Oar5kaox0dkvMlE1OyoA_omb8ttb6t1gbfilq8ty9M/edit?usp=sharing
DOI: 10.6084/m9.figshare.5589841.v1
title: EEG and BIS raw data

description: the dataset is used for estimation of depth of anesthesia. There are 24 case in total.
DOI: 10.6084/m9.figshare.5122822.v1
title: Supplementary Material for: AGO Recommendations for Diagnosis and Treatment of Patients with Primary and Metastatic Breast Cancer. Update 2011

description: Medicine
DOI: 10.6084/m9.figshare.25546771.v1
title: Data for "Intensity and mitigation potential of soil nitrogen losses from global maize and wheat production"

description: Dataset and maps for "Intensity and mitigation potential of soil nitrogen losses from global maize and wheat production"
DOI: 10.6084/m9.figshare.25703214.v1
title: Data for: Passive wing deployment and retraction in beetles and flapping microrobots

description: All data used in the article: <b>Passive wing deployment and retraction in beetles and flapping microrobots</b><b>Abstract</b>Birds, bats and many insects can tuck their wings against their bodies when at rest and deploy them to power flight. Whereas birds and bats use well-developed pectoral and wing muscles<sup>1</sup><sup>,</sup><sup>2</sup>, how insects control their wing deployment and retraction remains unclear because this varies among insect species. Beetles (Coleoptera) display one of the most complex mechanisms. In rhinoceros beetles, <i>Allomyrina dichotoma</i>, wing deployment is initiated by complete release of the elytra and partial release of the hindwings at their bases. Subsequently, the beetle starts flapping, elevates the hindwing bases and unfolds the hindwing tips in an origami-like fashion. Although the origami-like fold has been extensively explored<sup>3</sup><sup>,</sup><sup>4</sup><sup>,</sup><sup>5</sup><sup>,</sup><sup>6</sup><sup>,</sup><sup>7</sup><sup>,</sup><sup>8</sup>, limited attention has been given to the hindwing base movements, which are believed to be driven by the thoracic muscles<sup>5</sup><sup>,</sup><sup>9</sup><sup>,</sup><sup>10</sup><sup>,</sup><sup>11</sup>. Here we demonstrate that rhinoceros beetles can effortlessly deploy their hindwings without necessitating muscular activity. We show that opening the elytra triggers a spring-like partial release of the hindwings from the body, allowing the clearance needed for the subsequent flapping motion that brings the hindwings into the flight position. After flight, the beetle can use the elytra to push the hindwings back into the resting position, further strengthening the hypothesis of passive deployment. We validated the hypothesis using a flapping microrobot that passively deployed its wings for stable, controlled flight and retracted them neatly upon landing, demonstrating a simple, yet effective, approach to the design of insect-like flying micromachines.
DOI: 10.17632/5vvmdbtcd5
title: MDs dataset

description: The data described here are derived from insights into binding selectivity of inhibitors toward BRD4 and CBP by using MD simulations. The analyses were performed on six systems, including the F3J-BRD4/CBP, EX1-BRD4/CBP, and E2T-BRD4/CBP complexes. There are four folder: Eigenvalue, Porcupine, MSA, and Loop. The Eigenvalue folder includes the data of the eigenvalues against eigenvector indexes obtained from the diagonalization of the covariance matrix constructed by utilizing atomic coordinates saved at MD trajectories of six complexes. The Porcupine folder shows the first six eigenvectors (fort.71-fort.76), the initialized structure of six complexes, and k.txt file. Take fort.71 as an example, the first triple of numbers determine coordinates of the Cα atoms of the residues 53-166 in BRD4 and that of the residues 1083–1196 in CBP. They defined the starting point, and the unit is Å. The second triple of numbers show the motion directions of BRD4 and CBP, and they represent the movement vectors. The MSA folder includes the data of Molecular surface area (MSA) of six systems were calculated by the CPPTRAJ module in AMBER18, each *.dat file gives the MSA of 100,000 conformations, and the number in the second column represents MSA of each conformation, and the unit is the square of Å. The Loop folder indicates the data of the distance between the Cα atoms of Leu92/Leu1120 in the ZA-loop of BRD4/CBP and that of Pro142/Lys1170 in the BC-loop of BRD4/CBP, representing the distance of the ZA-loop away from the BC-loop, each *.dat file gives the distance of 100,000 conformations, and the number in the second column represents distance of the ZA-loop away from the BC-loop in each conformation, and the unit is Å. The two frequency.xlsx files give the data of the frequency distributions of MSA and that of distance, respectively . These data are useful for understanding internal dynamics and conformations of BRD4 and CBP due to inhibitor bindings.
DOI: 10.17632/zhnngnvvz8
title: LES-DEM computations of barchan dunes

description: These files contain the 20 first seconds of results of a CFD-DEM simulation of a barchan dune formation and the codes used to analyze those results. The simulation was carried out using the open-source free CFDEM software, which couples the open-source CFD code OpenFOAM with the open-source DEM code LIGGGHTS. The simulations were tested and the results agreed quite well with the expected results from the literature. The dataset contains the results of an example case, from both the DEM and the CFD sides, and we also share the full Octave code for post-processing those results.
DOI: 10.6084/m9.figshare.1041463.v6
title: The Search_2 dataset

description: The Search_2 dataset consists of <em>(1)</em> a set of 44 high-resolution digital color images of different complex natural scenes, <em>(2)</em> the ground truth corresponding to each of these scenes, and <em>(3)</em> the results of psychophysical experiments on each of these images. The images in the Search_2 dataset are a subset of a larger set that was used in a visual search and detection experiment. Each scene (image) contains a single military vehicle that serves as a search target. Areport describes the images in detail, and presents the corresponding ground truth and observer data. The image dataset, an Excel file with the ground truth and observer data, and a copy of this report are included in the dataset. The complete dataset can be used to validate <em>(1)</em> digital metrics that compute the visual distinctness (contrast, conspicuity, or saliency) of targets in complex scenes, and (<em>2)</em> models of human visual search and detection.
DOI: 10.6084/m9.figshare.6503153.v1
title: Segmentation Methods for Micro CT Images: A Comparative Study Using Human Bone Samples

description: Abstract X-ray microtomography (microCT) is a nondestructive technique used to assess bone morphometry. For an accurate analysis, it is necessary to segment the bone tissue from the background images, avoiding under- or overestimation of the real bone volume. Thus, segmentation methods for microCT can influence the accuracy of bone morphometry analysis. The purpose of this study was to compare two different image segmentation methods available on microCT software (subjective and objective) regarding to the human bone morphometric analysis. Sixteen samples containing a fixation screws covered by 0.5-1mm of bone were scanned using the SkyScan 1173 scanner. Three examiners segmented the microCT images subjectively and recorded the threshold values. Subsequently, an objective segmentation was also done. The 3D analysis was performed for both images using the values previously determined in CTAn software. Five bone morphometric parameters were calculated (BV/TV, Tb.Th, Tb.N, Tb.Sp, Conn.Den) and used as dependent variables. ANOVA showed no significant differences between the methods concerning BV/TV (p=0.424), Tb.N (p=0.672), Tb.Th (p=0.183), Tb.Sp (p=0.973) and Conn.Den (p=0.204). Intra- and interobserver agreement ranged from satisfactory to excellent (0.55-1 and 0.546-0.991, respectively). Therefore, results obtained with subjective threshorlding were similar to those obtained with objective segmentation. Since objective segmentation does not have human input and it is a truly objective method, it should be the first choice in microCT studies that concern homogeneity and high resolution human bone sample.
DOI: 10.6084/m9.figshare.29066489.v1
title: CENTRIL-D-Elevated Senescence Markers in Developing Trisomy 21 Human Lungs

description: Human chromosomal anomalies, notably trisomies, disrupt gene expression, leading to diverse cellular and organ phenotypes. Increased cellular senescence (SEN) and oxidative stress in trisomies have gained recent attention. We assessed SEN, senescence-associated secretory phenotype (SASP) and oxidative stress on trisomy 13, 18, and 21 (T13, T18, T21) human fetal lung tissues and isolated primary human fetal lung fibroblasts. Telomerase associated foci (TAF) staining showed DNA damage primarily within T21 and T18 lungs. These results were confirmed by RT-qPCR showing an increase of the SEN marker <i>CDKN2B</i> and SASP markers <i>IL-6</i> and <i>CXCL8</i>. In contrast, lung tissues from T13 showed an upregulation of <i>CDKN2A</i>, while no significant changes in SASP marker genes were observed. γ-H2AX was upregulated in each genotype, particularly in T21. Isolated fibroblasts demonstrated a strong association between T21 and several SEN markers. An increase of γ-H2AX positive cells were observed in fibroblasts from T21, T18 and T13, but only T21 exhibited an elevation in P21 expression. Solely T21 fibroblasts displayed a significant increase in reactive oxygen species (ROS) levels, as indicated by MitoSOX and CellROX. This study provides the first evidence of a link between SEN and trisomy anomalies during prenatal human lung development, particularly in T21.
DOI: 10.6084/m9.figshare.13582145.v2
title: Supporting_Dataset_Hip_Thrust_Paper_1_Full_Dataset.cmz

description: Raw Visual 3D workspace dataset of nineteen resistance trained males performing a barbell hip thrust for three repetitions at 70% 1RM.
DOI: 10.6084/m9.figshare.26976196.v1
title: GPCRSPACE

description: The quest for novel therapeutics targeting G protein-coupled receptors (GPCRs), essential in numerous physiological processes, is crucial in drug discovery. Despite the abundance of GPCR-targeting drugs, many receptors lack selective modulators, indicating a significant untapped therapeutic potential. To bridge this gap, we introduce GPCRSPACE, a novel GPCR-focused purchasable real chemical library developed using the G protein-coupled receptors large language models (GPCR LLM) architecture. Different from traditional machine learning models, GPCR LLM uses a positive sample machine learning strategy for training and does not need to construct any negative samples. This not only reduces false negatives but also reduces the time to label negative samples. GPCR LLM accelerates the identification and screening of potential GPCR-interactive compounds by learning the chemical space of GPCR-targeting molecules. GPCRSPACE, built on GPCR LLM, outperforms existing chemical datasets in synthesizability, structural diversity, and GPCR-likeness, making it a valuable tool for GPCR drug discovery.
DOI: 10.6084/m9.figshare.783024.v1
title: "Pipeline" for CellProfiler - CBC cytometry in psittaciformes - Beaufrere et al.

description: Complete Blood Cell Count in Psittaciformes by Using High- Throughput Image Cytometry: A Pilot Study Hugues Beaufre' re, DrMedVet, Dipl ECZM (Avian), Me ́lanie Ammersbach, DVM, and Thomas Tully, DVM, MS, Dipl ABVP (Avian), Dipl ECZM (Avian)
DOI: 10.17632/7fmy5kh278
title: Video files of pure Ga electromagnetic stirring

description: The dataset contains animation of comparison of numerical and experimental results for pure Ga solidification under TMF impact. And animations of liquid Ga transient flow under pulsed TMF.
DOI: 10.17632/pb86zm39k6
title: Polymer-Modified Pervious Concrete Incorporating Recycled Concrete Aggregates

description: Data for the paper titled "Optimizing and Predicting the Performance of Polymer-Modified Pervious Concrete Incorporating Recycled Concrete Aggregates: A Hybrid TOPSIS and Machine Learning Approach"
DOI: 10.17632/3x9yg2hzbx
title: BRP detection in Pc1 WT and N222D mutant mice

description: Raw LC-MS data (raw.d files) generated on an Agilent 6470 Triple Quadrupole LC-MS instrument to provide evidence for BRP peptide detection in females and males Pc1WT and Pc1N222D/N222D mouse brains. Data show detection of 538.6&gt;538 parent ion (+3 charge) and 538.6&gt;178.1 (y1+) daughter ion in mouse brains. The peaks co-elute with the synthesized standard (amidated mouse BRP) at 16 minutes.
DOI: 10.17632/snpf8f2tcx
title: Microbiota-dependent early life programming of gastrointestinal motility. Frith et al.

description: Gastrointestinal microbes modulate peristalsis and stimulate the enteric nervous system (ENS), whose development, as in the central nervous system (CNS), continues into the murine postweaning period. Given that adult CNS function depends on stimuli received during critical periods of postnatal development, we hypothesized that adult ENS function, namely motility, depends on microbial stimuli during similar critical periods. We gave fecal microbiota transplantation (FMT) to germ-free mice at weaning or as adults and found that only the mice given FMT at weaning recovered normal transit, while those given FMT as adults showed limited improvements. RNAseq of colonic muscularis propria revealed enrichments in neuron developmental pathways in mice exposed to gut microbes earlier in life, while mice exposed later – or not at all – showed exaggerated expression of inflammatory pathways. These findings highlight a microbiota-dependent sensitive period in ENS development, pointing to potential roles of the early life microbiome in later life dysmotility.
DOI: 10.17632/w89mfpv72k
title: Dermoscopic features differentiating port wine stain, arteriovenous malformation and capillary malformation-arteriovenous malformation syndrome

description: Preliminary multistep diagnostic algorithm to CM-AVMs, AVMs and PWSs based on specific dermoscopic features.
Dermoscopic patterns to be expected exclusively in either AVM or CM-AVM performed well in identifying potential fast-flow vascular malformations and may aid dermatologists in clinical diagnosis at an early age.
DOI: 10.6084/m9.figshare.25592049.v1
title: China's ecological footprint via biomass import and consumption is increasing

description: Here we uploaded the results developed in the manuscript: "China's ecological footprint via biomass import and consumption is increasing". The results contained consumption-based HANPP of different countries from 2004 to 2017, HANPP flows between China and other countries, sectoral HANPP intensity of different income groups in 2017, and variability range in key data and assumptions for high and low HANPP estimates.
DOI: 10.6084/m9.figshare.26879737.v1
title: Supplementary Material for: Adequacy assessment in lymph node aspirates – an exploratory cytomorphologic analysis of negative cervical node aspirates of head and neck carcinomas

description: Introduction
Fine needle aspiration cytology (FNAC) of lymph node is sensitive for detection of metastatic carcinoma but not without a significant false negative rate. This study reviews clinicocytological features of negative node aspirates to identify predictive factors for establishing adequacy criteria.

Methods
Negative FNAC specimens matched with neck dissection from a primary diagnosis of head and neck squamous cell, or undifferentiated (nasopharyngeal) carcinoma were reviewed for clinical and cytological parameters including lymphoid, inflammatory, and background components. 

Results
Slides from 86 lymph node aspirates including 50 positive for metastasis on follow-up were retrieved. Higher total lymphocyte count, lymphoid fragment count, germinal center fragment count, undifferentiated histology, presence of histiocytes and absence of blood were associated with a true negative cytologic diagnosis (p&lt;0.05), but not node size or location (p&gt;0.05). Undifferentiated histology, small lymphoid and germinal center fragments were independent factors indicative of a true negative diagnosis (p&lt;0.05). Large lymphoid fragments (p=0.052) demonstrated a trend. Assessment of lymphoid components over five hotspots high power fields (HFPs) were more robust in predictive value than only one hotspot. Receiver operating characteristic curve identified &gt;10 small lymphoid, &gt;20 large lymphoid and &gt;2 germinal center fragment per five HPFs as optimal adequacy thresholds. Stricter total lymphocyte count cutoff accompanies increase of diagnostic accuracy, up to 0.67 for ≥5 HPFs with &gt;500 lymphocytes.

Conclusion
Total counts of lymphoid and germinal center fragments from multiple HPFs are useful in adequacy assessment of lymph node aspirates and improves diagnostic performance of FNAC in exclusion of metastatic carcinoma.
DOI: 10.6084/m9.figshare.27262050.v1
title: Digital Literacy and Income

description: Digital Literacy and Income in Chinese Farming Households Obtained by Cleaning CFPS Database.
DOI: 10.6084/m9.figshare.28098494.v1
title: Effect of Performance on Social Identification

description: In two studies, people who attempted to thru-hike the Appalachian Trail filled out online surveys containing measures of social identification and performance.
DOI: 10.6084/m9.figshare.6673190.v1
title: Exploring Relationships between Proactive Personality and Job Performance of Athletic Coaches

description: This study investigated the direct impact of a coach’s proactive personality tendency on job performance and organizational citizenship behavior (OCB) and aimed to determine whether OCB mediates between proactive personality and job performance. To avoid common-method variance, we conducted a multi-source and inter-temporal empirical study. We distributed a two-phased questionnaire to coaches and sports team leaders of high school athletic classes in Taiwan. Results showed a significant correlation between proactive personality, job performance, and OCB and that OCB mediated between proactive personality and job performance. Our results suggest that proactive personality can crucially influence an athletic coach’s behavior and effectiveness. Moreover, in its exploration of the benefits of an athletic coach’s proactive personality traits from the perspective of organizational attachment theory and its in-depth analysis of the organizational behavior and work outcomes of sports coaches in athletic classes, this study expands the scope of applied organizational behavior research. Based on our findings, we offer recommendations for further work in sports management research.
DOI: 10.17632/dwtrkjz2kk
title: Attempts at Pacts data: the opposition actors in the negotiations on democratization.

description: A new dataset on attempts to negotiate democratization from 1974 to 2015, along with names, types, and characteristics of opposition organizations that participate in these attempts. The dataset contains variables that describe actors` organizational capacity such as share of votes, age, membership, along with the data relevant for a country`s perspective for democratization: economic development and a type of initial regime. Part of the data is retrieved from V-Dem, NAVCO, GWF, and WB datasets.
DOI: 10.17632/x8jwmbcpgn
title: Detecting bid-riggin coalitions in different countries and auction formats

description: The R-script 'Code_Imhof_Wallimann' is the code of the paper by David Imhof and Hannes Wallimann: Detecting bid-rigging coalitions in different countries and auction formats published in the International Review of Law and Economics (https://doi.org/10.1016/j.irle.2021.106016). If you use our data, please quote the paper. 

In addition, we provide the following data sets prepared for the paper: 
- Okinawa cartel (see also Ishii, 2014, Huber et al., 2020): 'Japanesedata'
- Swiss cartels (see also Wallimann et al., 2020): 'Swissdata'
- Italian cartels (see also Conley and Decarolis, 2016): 'Italiandata'
- Robustness analysis (see also Wallimann et al., 2020): 
	(1) Swiss cartels with additional predictors: 'Swissdata_addpred' 
	(2) MISSING YET: Swiss cartels with coalitions of two firms

Before using the data, read the 'ReadMe' file. 

If you have any comments or questions, don't hesitate to contact Hannes Wallimann (hannes.wallimann@hslu.ch) or David Imhof  (david.imhof5@gmail.com).
DOI: 10.6084/m9.figshare.22726298.v1
title: Anomaly Detection in Microservices-based Systems

description: This repository contains two datasets used for anomaly detection in microservices-based systems. The datasets are summarized versions of several CSV files containing data from normal and anomalous instances. The two datasets provided here are representative of service and application anomalies. For more detailed information, please refer to the README file included in the repository.