cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11430318
title: MOESM12 of Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients

description: Additional file 12. Genes down-regulated by digitoxin treatment and gene therapy against IB3-1 controls annotated to cell-cell interaction/fibrosis ontologies, and compared in parallel with VX-661, VX-770 and VX-809.
DOI: 10.6084/m9.figshare.11430318.v1
title: MOESM12 of Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients

description: Additional file 12. Genes down-regulated by digitoxin treatment and gene therapy against IB3-1 controls annotated to cell-cell interaction/fibrosis ontologies, and compared in parallel with VX-661, VX-770 and VX-809.
DOI: 10.6084/m9.figshare.11430309
title: MOESM11 of Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients

description: Additional file 11. Genes downregulated by digitoxin treatment and gene therapy against IB3-1 controls annotated to inflammatory ontologies, compared in parallel to effects of VX-661, VX-770 and VX-809.
DOI: 10.6084/m9.figshare.11430309.v1
title: MOESM11 of Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients

description: Additional file 11. Genes downregulated by digitoxin treatment and gene therapy against IB3-1 controls annotated to inflammatory ontologies, compared in parallel to effects of VX-661, VX-770 and VX-809.
DOI: 10.6084/m9.figshare.11430303
title: MOESM10 of Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients

description: Additional file 10. Digitoxin-dependent changes in protein expression for IL-8, IL-6, TGFBR2 and KRT8.
DOI: 10.6084/m9.figshare.11430303.v1
title: MOESM10 of Gene therapy-emulating small molecule treatments in cystic fibrosis airway epithelial cells and patients

description: Additional file 10. Digitoxin-dependent changes in protein expression for IL-8, IL-6, TGFBR2 and KRT8.
DOI: 10.6084/m9.figshare.11430282
title: MOESM6 of Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic

description: Additional file 6. Results of differential abundance analysis comparing faecal and colonic microbiota of surgical colic patients. Colonic content samples are the reference category.
DOI: 10.6084/m9.figshare.11430282.v1
title: MOESM6 of Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic

description: Additional file 6. Results of differential abundance analysis comparing faecal and colonic microbiota of surgical colic patients. Colonic content samples are the reference category.
DOI: 10.6084/m9.figshare.11430276
title: MOESM5 of Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic

description: Additional file 5. Results of differential abundance analysis comparing faecal microbiota of orthopaedic and colic horses on admission. Colic samples are the reference category.
DOI: 10.6084/m9.figshare.11430276.v1
title: MOESM5 of Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic

description: Additional file 5. Results of differential abundance analysis comparing faecal microbiota of orthopaedic and colic horses on admission. Colic samples are the reference category.
DOI: 10.6084/m9.figshare.11430255
title: MOESM12 of Comparison of the transcriptomes of two tardigrades with different hatching coordination

description: Additional file 12. Annotations of genes overlapping piRNA loci predicted in both PILFER and proTRAC. https://github.com/abs-yy/Yoshida_and_Sugiura_etal_2018/blob/master/piRNA_clusters_intersect_geneAnnotations.txt.
DOI: 10.6084/m9.figshare.11430255.v1
title: MOESM12 of Comparison of the transcriptomes of two tardigrades with different hatching coordination

description: Additional file 12. Annotations of genes overlapping piRNA loci predicted in both PILFER and proTRAC. https://github.com/abs-yy/Yoshida_and_Sugiura_etal_2018/blob/master/piRNA_clusters_intersect_geneAnnotations.txt.
DOI: 10.6084/m9.figshare.11430246
title: MOESM11 of Comparison of the transcriptomes of two tardigrades with different hatching coordination

description: Additional file 11. Excel file containing the expression profiles of genes focused in this analysis. https://github.com/abs-yy/Yoshida_and_Sugiura_etal_2018/blob/master/Sdata_2_geneexpression.xlsx.
DOI: 10.6084/m9.figshare.11430246.v1
title: MOESM11 of Comparison of the transcriptomes of two tardigrades with different hatching coordination

description: Additional file 11. Excel file containing the expression profiles of genes focused in this analysis. https://github.com/abs-yy/Yoshida_and_Sugiura_etal_2018/blob/master/Sdata_2_geneexpression.xlsx.
DOI: 10.6084/m9.figshare.11430231
title: MOESM10 of Comparison of the transcriptomes of two tardigrades with different hatching coordination

description: Additional file 10. Expression profiles of genes in group 1 and 2 of SOM clustering in H. exemplaris. https://github.com/abs-yy/Yoshida_and_Sugiura_etal_2018/blob/master/Sdata_1_hypsibius_som_group1ANND2.xlsx.
DOI: 10.6084/m9.figshare.11430231.v1
title: MOESM10 of Comparison of the transcriptomes of two tardigrades with different hatching coordination

description: Additional file 10. Expression profiles of genes in group 1 and 2 of SOM clustering in H. exemplaris. https://github.com/abs-yy/Yoshida_and_Sugiura_etal_2018/blob/master/Sdata_1_hypsibius_som_group1ANND2.xlsx.
DOI: 10.6084/m9.figshare.11428113
title: Proteome database of Listeria monocytogenes

description: <i>Listeria monocytogenes</i> is a human pathogen, but this is not the only reason why it is attracting medical attention. Of more intrigue is the ability of the single celled bacterium to adopt an intracellular lifestyle within mammalian cells and remain successful in cell replication and transmission to other cells of the body. This thus set forth a flurry of research utilizing contemporary cell biological and genetics techniques to decipher the molecular mechanisms that underpin the ability of <i>L. monocytogenes</i> to evade immune detection as well as gaining entry to host cells. Although some understanding of the mechanisms underlying pathogenesis has been elucidated, there remain many outstanding questions awaiting scientific investigation and illumination. This study sought to provide fundamental information that could enable a genetics-based strategy seeking to unveil the molecular mysteries that guide <i>L. monocytogenes</i> to maintaining a successful intracellular lifestyle and exerting pathogenic pressure on the host cell. Specifically, an in-house MATLAB software was used in parsing the UniProt proteome file of <i>L. monocytogenes</i>, which yields a database of protein names, amino acid sequence, number of residues, molecular weight and nucleotide sequence that could collectively inform the metabolic, signalling and regulatory mechanisms native to this human pathogen. More importantly, fundamental insights could be gleaned when protein names and pathways could be used to decide the molecular targets that should be deleted in generating mutants useful for both cell-line and animal model-based interrogation of pathogenesis mechanisms of this species. Overall, modern genetics and biomedical research requires support from omics technologies in generating a global map of molecular effectors whose selective inactivation could help unentangle complex relationships between different disease pathways. <br><br>
DOI: 10.6084/m9.figshare.11428110
title: Reconstruction of Bennu Particle Events from Sparse Data Figure Data

description: Data used to generate the figures in:<br>Pelgrift et al. (2020). Reconstruction of Bennu Particle Events from Sparse Data. <i>Earth and Space Science</i>. doi: 10.1029/2019EA000938
DOI: 10.6084/m9.figshare.11428110.v1
title: Reconstruction of Bennu Particle Events from Sparse Data Figure Data

description: Data used to generate the figures in:<br>Pelgrift et al. (2020). Reconstruction of Bennu Particle Events from Sparse Data. <i>Earth and Space Science</i>. doi: 10.1029/2019EA000938
DOI: 10.6084/m9.figshare.11427516
title: MuzzleContactDyadRates

description: Counts of muzzle contact dyads with individual level variables<br>
DOI: 10.6084/m9.figshare.11427516.v1
title: MuzzleContactDyadRates

description: Counts of muzzle contact dyads with individual level variables<br>
DOI: 10.6084/m9.figshare.11427516.v2
title: MuzzleContactDyadRates

description: Counts of muzzle contact dyads with individual level variables<br>
DOI: 10.6084/m9.figshare.11427513
title: MuzzleContactObservations

description: Muzzle-muzzle contacts with individual-level variables
DOI: 10.6084/m9.figshare.11427510
title: ReceiversAggregated

description: Counts of initiating rates of muzzle-muzzle contact with individual-level variables
DOI: 10.6084/m9.figshare.11427510.v2
title: ReceiversAggregated

description: Counts of initiating rates of muzzle-muzzle contact with individual-level variables
DOI: 10.6084/m9.figshare.11427513.v1
title: MuzzleContactobservations

description: Muzzle-muzzle contacts with individual-level variables
DOI: 10.6084/m9.figshare.11427510.v1
title: ReceiversAggregated

description: Counts of initiating rates of muzzle-muzzle contact with individual-level variables
DOI: 10.6084/m9.figshare.11427513.v3
title: MuzzleContactObservations

description: Muzzle-muzzle contacts with individual-level variables
DOI: 10.6084/m9.figshare.11427507
title: InitiatorsAggregated

description: Counts of initiating rates of muzzle-muzzle contact with individual-level variables<br>
DOI: 10.6084/m9.figshare.11427513.v2
title: MuzzleContactObservations

description: Muzzle-muzzle contacts with individual-level variables
DOI: 10.6084/m9.figshare.11427507.v1
title: InitiatorsAggregated

description: Counts of receiving rates of muzzle-muzzle contact with individual-level variables<br>
DOI: 10.6084/m9.figshare.11427507.v3
title: InitiatorsAggregated

description: Counts of initiating rates of muzzle-muzzle contact with individual-level variables<br>
DOI: 10.6084/m9.figshare.11427507.v2
title: InitiatorsAggregated

description: Counts of initiating rates of muzzle-muzzle contact with individual-level variables<br>
DOI: 10.6084/m9.figshare.11427261
title: UA m=3

description: UA m=3
DOI: 10.6084/m9.figshare.11427261.v1
title: UA m=3

description: UA m=3
DOI: 10.6084/m9.figshare.11427258
title: UA m=2

description: UA m=2
DOI: 10.6084/m9.figshare.11427258.v1
title: UA m=2

description: UA m=2
DOI: 10.6084/m9.figshare.11427255
title: UA m=1

description: UA m=1
DOI: 10.6084/m9.figshare.11427255.v1
title: UA m=1

description: UA m=1
DOI: 10.6084/m9.figshare.11427252
title: Citation Network

description: Citation network
DOI: 10.6084/m9.figshare.11427252.v1
title: Citation Network

description: Citation network
DOI: 10.6084/m9.figshare.11427243
title: PA m=3

description: PA m=3
DOI: 10.6084/m9.figshare.11427243.v1
title: PA m=3

description: PA m=3
DOI: 10.6084/m9.figshare.11427228
title: PA m=2

description: PA m=2
DOI: 10.6084/m9.figshare.11427228.v1
title: PA m=2

description: PA m=2
DOI: 10.6084/m9.figshare.11427189
title: PA-m1

description: PA m=1
DOI: 10.6084/m9.figshare.11427189.v1
title: PA-m1

description: PA m=1
DOI: 10.6084/m9.figshare.11427189.v2
title: PA-m1

description: PA m=1
DOI: 10.6084/m9.figshare.11427000
title: Multimorbidity

description: Gender and multimorbidity in hospitalized patients
DOI: 10.6084/m9.figshare.11426550
title: The link between language and action in aging

description: -a file with all aggregated e-prime data for younger and older participant- a file with all means data by participants (in yellow the participants conserved in analysis)
DOI: 10.6084/m9.figshare.11426058
title: Corinth Gulf earthquake simulation

description: corinth_0025_009_2_cut.zip contains a simulation of the seismicity of the Corinth Gulf fault system lasting 100 kyrs from magnitude 4.0.Corinth_stress_history_0025_009_2.zip contains the stress history on each cell composing the fault model of the Corinth Gulf fault system obtained from a simulation lasting 100kyr.
DOI: 10.6084/m9.figshare.11426058.v1
title: Corinth Gulf earthquake simulation

description: corinth_0025_009_2_cut.zip contains a simulation of the seismicity of the Corinth Gulf fault system lasting 100 kyrs from magnitude 4.0.Corinth_stress_history_0025_009_2.zip contains the stress history on each cell composing the fault model of the Corinth Gulf fault system obtained from a simulation lasting 100kyr.
DOI: 10.6084/m9.figshare.11424924
title: Supplemental dataset for the paper "Estimating aircraft drag polar using open flight surveillance data and a stochastic total energy model"

description: This dataset contains the dataset for the paper "Estimating aircraft drag polar using open flight surveillance data and a stochastic total energy model". <br><br><b>Dataset structure:</b><br><i>flight_trajectories</i>: Contains flight trajectories generated from ADS-B and Mode S data. Trajectories are sorted by aircraft types and sorted in different subdirectories.<i><br></i><i>estimation_results</i><b>: </b>Contains the drag polar parameters estimated by the method proposed in the paper. The estimations are based on previous trajectories.<br><i><br></i><i>cfd_simulation_results</i>: Contains CFD simulation results of a B747-400 aircraft with different angles of attack and corresponding lift/drag coefficients.<br><b><br></b><b><br></b><b>CSV column definitions:</b><br><i>ts</i>: Unix time stamp<i>icao</i>: aircraft ICAO Mode-S transponder identifier<i>lat</i>: latitude (deg)<i>lon</i>: longitude (deg)<i>alt</i>: altitude (ft)<i>gs</i>: ground speed (kt)<i>trk</i>: track angle (deg)<i>roc</i>: rate of climb (ft/min)<i>tas</i>: true airspeed (kt)<i>ias</i>: indicated airspeed (kt)<i>mach</i>: Mach number<i>wx</i>: wind speed at x axis (u component of wind) (m/s)<i>wy</i>: wind speed at y axis (v component of wind) (m/s)<i>temp</i>: temperature (K)<i>cd</i>: drag coefficient<i>cl</i>: lift coefficient<i>cd0</i>: zero lift drag coefficient<i>k</i>: lift induced drag coefficient<i>e</i>: Oswald factor<i>m</i>: mass (kg)<br>
DOI: 10.6084/m9.figshare.11424924.v1
title: Supplemental dataset for the paper "Estimating aircraft drag polar using open flight surveillance data and a stochastic total energy model"

description: This dataset contains the dataset for the paper "Estimating aircraft drag polar using open flight surveillance data and a stochastic total energy model". <br><br><b>Dataset structure:</b><br><i>flight_trajectories</i>: Contains flight trajectories generated from ADS-B and Mode S data. Trajectories are sorted by aircraft types and sorted in different subdirectories.<i><br></i><i>estimation_results</i><b>: </b>Contains the drag polar parameters estimated by the method proposed in the paper. The estimations are based on previous trajectories.<br><i><br></i><i>cfd_simulation_results</i>: Contains CFD simulation results of a B747-400 aircraft with different angles of attack and corresponding lift/drag coefficients.<br><b><br></b><b><br></b><b>CSV column definitions:</b><br><i>ts</i>: Unix time stamp<i>icao</i>: aircraft ICAO Mode-S transponder identifier<i>lat</i>: latitude (deg)<i>lon</i>: longitude (deg)<i>alt</i>: altitude (ft)<i>gs</i>: ground speed (kt)<i>trk</i>: track angle (deg)<i>roc</i>: rate of climb (ft/min)<i>tas</i>: true airspeed (kt)<i>ias</i>: indicated airspeed (kt)<i>mach</i>: Mach number<i>wx</i>: wind speed at x axis (u component of wind) (m/s)<i>wy</i>: wind speed at y axis (v component of wind) (m/s)<i>temp</i>: temperature (K)<i>cd</i>: drag coefficient<i>cl</i>: lift coefficient<i>cd0</i>: zero lift drag coefficient<i>k</i>: lift induced drag coefficient<i>e</i>: Oswald factor<i>m</i>: mass (kg)<br>
DOI: 10.6084/m9.figshare.11423847
title: Catalysts to knowledge management implementation in Nigerian tertiary institutions

description: This study adopted both probability and non-probability sampling. The stratified random sampling was used to select ten tertiary institutions from the population frame of 46, while purposive sampling was used to select the institutions as well as the respondents that comprises of 30 students and 20 academic staff. The total sample population was 550<br>
DOI: 10.6084/m9.figshare.11423847.v1
title: Catalysts to knowledge management implementation in Nigerian tertiary institutions

description: This study adopted both probability and non-probability sampling. The stratified random sampling was used to select ten tertiary institutions from the population frame of 46, while purposive sampling was used to select the institutions as well as the respondents that comprises of 30 students and 20 academic staff. The total sample population was 550<br>
DOI: 10.6084/m9.figshare.11423847.v2
title: Catalysts to knowledge management implementation in Nigerian tertiary institutions

description: This study adopted both probability and non-probability sampling. The stratified random sampling was used to select ten tertiary institutions from the population frame of 46, while purposive sampling was used to select the institutions as well as the respondents that comprises of 30 students and 20 academic staff. The total sample population was 550<br>
DOI: 10.6084/m9.figshare.11423721
title: Sorting FCS files: CRISPR activation library screening with Dendra2-positive cells

description: The<b> </b><i>MYC</i> promoter-reporter system was developed with a photoconvertible fluorescent protein, Dendra2, and named “p<i>MYC-</i>promoter-Dendra2.” This <i>MYC</i> promoter-reporter system was designed to harbor a proximal <i>MYC </i>promoter at −3.1 kb. Both the CRISPR activation library and p<i>MYC-</i>promoter-Dendra2 were induced to HEK 293T cells, and Dendra2-positive cells, that are supposed that <i>MYC</i><i> </i>should be upregulated, were collected individually by a cell sorter.<br>
DOI: 10.6084/m9.figshare.11423718
title: Overexpression vector for M1AP with a doxycycline-inducible vector confirmed that M1AP induced high MYC expression by real-time quantitative PCR

description: A pTRIPZ-<em>M1AP</em>-<em>GFP,</em> doxycycline-inducible lentiviral vector, was induced HEK293T cells and RNA was isolated using an RNeasyR Mini Kit (Qiagen) according to the manufacturer’s instructions. Complementary DNA (cDNA) was generated from RNA with ReverTra AceR qPCR RT Master Mix (Toyobo). <em>Beta-ACTIN</em> was used as an endogenous control. Using the ABI Prism 7900HT (Applied Biosystems), quantitative PCR (qPCR) analysis was performed to quantify the RNA level using SYBR Mix. The sequences for the PCR primers used in gene expression were as follows: <em>MYC:</em> 5′-CGACTCTGAGGAGGAACAAGAA-3′ (forward) and 5′-CAGCAGAAGGTGATCCAGACT-3′ (reverse), <i>β<em>-ACTIN</em></i>: 5′-CACAGAGCCTCGCCTTTGCC-3′ (forward) and 5′-CACAGAGCCTCGCCTTTGCC-3′ (reverse). The mRNA level of the targeted gene was analyzed by comparison with the standard calibration curve.
DOI: 10.6084/m9.figshare.11423718.v1
title: Overexpression vector for M1AP with a doxycycline-inducible vector confirmed that M1AP induced high MYC expression by real-time quantitative PCR

description: A pTRIPZ-<em>M1AP</em>-<em>GFP,</em> doxycycline-inducible lentiviral vector, was induced HEK293T cells and RNA was isolated using an RNeasyR Mini Kit (Qiagen) according to the manufacturer’s instructions. Complementary DNA (cDNA) was generated from RNA with ReverTra AceR qPCR RT Master Mix (Toyobo). <em>Beta-ACTIN</em> was used as an endogenous control. Using the ABI Prism 7900HT (Applied Biosystems), quantitative PCR (qPCR) analysis was performed to quantify the RNA level using SYBR Mix. The sequences for the PCR primers used in gene expression were as follows: <em>MYC:</em> 5′-CGACTCTGAGGAGGAACAAGAA-3′ (forward) and 5′-CAGCAGAAGGTGATCCAGACT-3′ (reverse), <i>β<em>-ACTIN</em></i>: 5′-CACAGAGCCTCGCCTTTGCC-3′ (forward) and 5′-CACAGAGCCTCGCCTTTGCC-3′ (reverse). The mRNA level of the targeted gene was analyzed by comparison with the standard calibration curve.
DOI: 10.6084/m9.figshare.11423721.v1
title: Sorting FCS files: CRISPR activation library screening with Dendra2-positive cells

description: The<b> </b><i>MYC</i> promoter-reporter system was developed with a photoconvertible fluorescent protein, Dendra2, and named “p<i>MYC-</i>promoter-Dendra2.” This <i>MYC</i> promoter-reporter system was designed to harbor a proximal <i>MYC </i>promoter at −3.1 kb. Both the CRISPR activation library and p<i>MYC-</i>promoter-Dendra2 were induced to HEK 293T cells, and Dendra2-positive cells, that are supposed that <i>MYC</i><i> </i>should be upregulated, were collected individually by a cell sorter.<br>
DOI: 10.6084/m9.figshare.11423352
title: Modern Hebrew dataset

description: Modern Hebrew characters
DOI: 10.6084/m9.figshare.11423265
title: MOESM5 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 5: Table S5. Proteomics raw data.
DOI: 10.6084/m9.figshare.11423268
title: MOESM6 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 6: Table S6. Filtered proteomics data used for IPA analysis in Fig. 3.
DOI: 10.6084/m9.figshare.11423265.v1
title: MOESM5 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 5: Table S5. Proteomics raw data.
DOI: 10.6084/m9.figshare.11423268.v1
title: MOESM6 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 6: Table S6. Filtered proteomics data used for IPA analysis in Fig. 3.
DOI: 10.6084/m9.figshare.11423259
title: MOESM3 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 3: Table S3. IPA analysis output.
DOI: 10.6084/m9.figshare.11423262
title: MOESM4 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 4: Table S4. Evidence for alterations in proteins involved in the complement cascade in human AD synapses.
DOI: 10.6084/m9.figshare.11423259.v1
title: MOESM3 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 3: Table S3. IPA analysis output.
DOI: 10.6084/m9.figshare.11423256
title: MOESM2 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 2: Table S2. DAVID Analysis confirms enrichment of synaptic proteins.
DOI: 10.6084/m9.figshare.11423262.v1
title: MOESM4 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 4: Table S4. Evidence for alterations in proteins involved in the complement cascade in human AD synapses.
DOI: 10.6084/m9.figshare.11423253
title: MOESM4 of Synergistic effects of APOE and sex on the gut microbiome of young EFAD transgenic mice

description: Additional file 4: Table S2. Results of Mann-Whitney U tests at specific taxonomic levels in EFAD mice. Significantly different relative abundance of bacterial genera associated with APOE, sex, and APOE + sex, identified by Mann-Whitney U under the Monte Carlo Simulation corrected for false discovery rate (p
DOI: 10.6084/m9.figshare.11423256.v1
title: MOESM2 of Comparative profiling of the synaptic proteome from Alzheimerâ€™s disease patients with focus on the APOE genotype

description: Additional file 2: Table S2. DAVID Analysis confirms enrichment of synaptic proteins.