cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.72730
title: Supporting data for: The influence of front strength on the development and equilibration of symmetric instability.

description: Input files, source code, and a post-processing script used to run the numerical simulations reported in Wienkers et al. Part I and II
DOI: 10.15468/dl.7npx5m
title: Occurrence Download

description: A dataset containing 40931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Mycteria americana Linnaeus, 1758"
 ]
}

 The dataset includes 40931 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037810-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zykt5x
title: Occurrence Download

description: A dataset containing 37553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Myiarchus cinerascens (Lawrence, 1851)"
 ]
}

 The dataset includes 37553 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037809-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3618818_d2.v1
title: Additional file 3: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Gold standard matrix. The expert hand-curated matrix used as the ground truth to evaluate the ETC generated matrices. (XLSX 31Â kb)
DOI: 10.17863/cam.35687
title: Data supporting 'On the derivation of rail roughness spectra from axle-box vibration: development of a new technique'

description: Data necessary to re-create the accelaration and power spectral density figures in the paper: 'On the derivation of rail roughness spectra from axle-box vibration: development of a new technique'. The paper presents progress towards a new stochastic frequency-domain inverse method that derives wavelength-spectra of rail roughness from axle-box acceleration measurements.
DOI: 10.6084/m9.figshare.c.3618809_d4.v1
title: MOESM2 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries

description: Additional file 2: Appendix 2. Data extraction code book and questionnaire.
DOI: 10.6084/m9.figshare.c.3618824_d3.v1
title: Additional file 7: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

description: List of primers used in this study. (XLSX 4 kb)
DOI: 10.6084/m9.figshare.c.3618818_d3.v1
title: Additional file 2: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Normalized input. The normalized input used in the experiment. (TXT 308Â kb)
DOI: 10.6084/m9.figshare.c.3618809_d5.v1
title: MOESM3 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries

description: Additional file 3: Appendix 3. Included articles. Table S3. List of included articles.
DOI: 10.6084/m9.figshare.c.3618839_d1.v1
title: Additional file 1: of Significance bias: an empirical evaluation of the oral health literature

description: Functions to scrape P-values from Pubmed abstracts. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3618842_d1.v1
title: Additional file 1: of Phosphodiesterases in non-neoplastic appearing colonic mucosa from patients with colorectal neoplasia

description: qPCR data for PDE10A. (XLSX 44 kb)
DOI: 10.57745/lm8y2i
title: Cytokine production by Peyer Patch and PBMC cells in formula-fed piglets.tab

description: Individual data of the production of cytokines (IL-10 and TNF) by the Peyer cells and the PBMC isolated from piglets fed formulas (CTRL, non-supplemented formula ; or supplemented with human milk Synthetic communities (SynComs) of 11 HM strains each, which exhibited an in vitro anti-inflammatory (AI) or immunostimulatory (HI) profile according to a previous in vitro characterization on an intestinal quadricellular model ; Le Bras et al 2024 doi.org/10.1093/ismeco/ycad019) at PND24.
IL-10 and TNFα secretion by Peyer Patch (PP) cells and Peripheral Blood Mononuclear Cells (PBMC) was analysed in unstimulated and stimulated (LPS or Concanavalin A) conditions.
DOI: 10.57745/gawg6q
title: OTUs identified in sow milk.tab

description: Full dataset of OTUs identified from 5 sow milk samples (non rarefied sequence counts). 546 OTUs were identified.
DOI: 10.57745/h4h4ej
title: Individual ileal and colonic data used for PLS-DA and MFA.xlsx

description: Full dataset of variables (relative abundance of OTUS in ileal and colonic microbiota, relative gene expression in ileum and colon, and ileal and colonic variables related to epithelial barrier and immune functions) studied in formula-fed and sow-milk-fed mini-piglets at postnatal day 24.
A Partial Least Squares-Discriminant Analysis (PLS-DA) was performed on the complete dataset from the three formula-fed piglets (CTRL, non-supplemented formula ; or supplemented with human milk Synthetic communities (SynComs) of 11 HM strains each, which exhibited an in vitro anti-inflammatory (AI) or immunostimulatory (HI) profile according to a previous in vitro characterization on an intestinal quadricellular model ; Le Bras et al 2024 doi.org/10.1093/ismeco/ycad019), according to the site (ileum, colon).
The most discriminant variables that displayed a Variable Importance in Projection (VIP) score &gt; 1 in the PLS-DA (in BOLD in the files ; n = 112 out of a total of 201 variables in the ileum and n = 141 out of a total of 250 variables in the colon) were selected for a multifactorial analysis (MFA) after grouping by function (6 functions) or phylum (5 phyla)
DOI: 10.57745/x3fwln
title: Relative abundance of the OTUs that did not correspond to AI and HI bacteria in formulas.tab

description: Relative abundance (in % of total OTUs) of the OTUs identified in rehydrated formulas (CTRL, non-supplemented formula ; or supplemented with human milk Synthetic communities (SynComs) of 11 HM strains each, which exhibited an in vitro anti-inflammatory (AI) or immunostimulatory (HI) profile according to a previous in vitro characterization on an intestinal quadricellular model ; Le Bras et al 2024 doi.org/10.1093/ismeco/ycad019). These OTUS did not correspond to the added SynCom AI and/or HI bacteria (OTUs corresponding to SynCom bacteria are presented in Table 1 in the paper).
DOI: 10.6084/m9.figshare.c.3618818_d5.v1
title: Additional file 1: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Original input. The original input used in the experiment. (TXT 296Â kb)
DOI: 10.6084/m9.figshare.c.3618824_d7.v1
title: Additional file 2: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

description: List of all predicted miRNA loci in the rainbow trout genome with functional, structural and conservation annotation. The list of the 3270 predicted miRNA loci that have been discovered in the study. For each loci, the file gives information about basic information (miRNA id, chromosome location, start and stop of the pre-miR, strand, expresion information, prediction score, pre-miRNA sequence, miRNA sequence, pre-miRNA length and miRNA length), structural annotation (genomic position regarding protein coding genes with sRNA browse annotation or intron annotation), functional annotation for both the pre-miRNA and the mature miRNA (mirbase, Rfam, tRNAs, rRNA or repeat elements annotation) and conservation annotation (conservation of rainbow trout loci in 8 fish species, nm = number of mismatch). (XLSX 1068 kb)
DOI: 10.6084/m9.figshare.c.3618824_d8.v1
title: Additional file 6: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

description: List of novel miRNA in the rainbow trout. The list of the 94 predicted new miRNA loci that have been discovered with high confidence in the study. For each loci, the file gives information about: name, miRNA locus ID (same name as in Additional file 4), chromosome location, start and stop of the pre-miR, strand, length of the pre-miR, prediction score, DNA sequence of the pre-miR. (XLSX 13 kb)
DOI: 10.17863/cam.59167
title: Research data supporting "Defect structures in (001) zincblende GaN/3C-SiC nucleation layers"

description: The data file "facet angle AFM" contains the full datasets of facet angles measured by AFM of a nominally 3 nm-thick annealed GaN NL grown on 3C-SiC. The individual islands have been approached by front of the AFM tip along the fast scan direction, which was along [110] (along the short axis of the islands). Linescans have been taken parallel to fast scan direction in direction of the approaching tip. Angles have been measured between the facets and the surrounding surface. To determine the facet angle of the other site of the islands, the sample has been rotated by 180° prior to another AFM measurement.
DOI: 10.6084/m9.figshare.c.3619010_d5.v1
title: MOESM4 of A rapid passage through a two-active-X-chromosome state accompanies the switch of imprinted X-inactivation patterns in mouse trophoblast stem cells

description: Additional file 4: ChIP-on-chip analysis of H3K27me3 distribution along X-linked genes in male F2 TS cells, in female F3 TS cells and in I-XCI revertant cells from clone 1#A. Mean of two replicate ChIP experiments.
DOI: 10.17863/cam.26422
title: Research data supporting: Minimising energy in construction: practitioners’ views on material efficiency

description: Data is from an online survey (hosted using Google Surveys). The data was generated by the users filling in the questions (36 questions for the survey and 9 about their background). Data was collected between 29 June and 10 October 2017.
DOI: 10.6084/m9.figshare.c.3619025_d1.v1
title: Additional file 8: Table S4. of Exploiting single-cell expression to characterize co-expression replicability

description: BrainSpan sample metadata and co-expression summary statistics. For our re-analysis of the BrainSpan data we generated co-expression networks for each individual with 10 or more samples. The table lists the sample ID, sex, age, the number of samples included in the network, and then provides summary statistics from the co-expression analysis including the AUROC of the autism candidate (ASD) genes, the mean expression of the ASD genes, and the mean performance of the network compared to GO slim. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619010_d9.v1
title: MOESM7 of A rapid passage through a two-active-X-chromosome state accompanies the switch of imprinted X-inactivation patterns in mouse trophoblast stem cells

description: Additional file 7: Single-cell RT-qPCR analysis in F3 parental cells, in cells of clones 1#C and 1#A after HAT removal and in cells of clones 3#C and 2#C both before and after HAT release.
DOI: 10.6084/m9.figshare.c.3619019_d2.v1
title: Additional file 3: of Exploiting single-molecule transcript sequencing for eukaryotic gene prediction

description: Perl scripts. (ZIP 19 kb)
DOI: 10.6084/m9.figshare.c.3619025_d2.v1
title: Additional file 3: Table S2. of Exploiting single-cell expression to characterize co-expression replicability

description: Sample metadata for ChC and Pv single cell RNA-seq analysis. (XLSX 16 kb)
DOI: 10.17863/cam.51618
title: Data set related to "A New Equalizer Structure for High-Speed Optical Links based on Carrierless Amplitude and Phase Modulation" presented at ICTON 2020

description: Experimental data on the performance of high-speed optical links using the new equalizer concept presented in the paper "A New Equalizer Structure for High-Speed Optical Links based on Carrierless Amplitude and Phase Modulation" presented at ICTON 2020.
DOI: 10.6084/m9.figshare.c.3619121_d2.v1
title: Additional file 3: Table S1. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: Genome annotation. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3619121_d4.v1
title: Additional file 23: Table S11. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: G. rostochiensis genome libraries. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3619142_d1.v1
title: Additional file 1: of 
                     Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Viet Nam

description: M. tuberculosis isolates at the regional reference hospitals of Vietnam. (XLS 333 kb)
DOI: 10.6084/m9.figshare.c.3619121_d7.v1
title: Additional file 21: Table S9. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

description: G. rostochiensis putative DOG effectors. (XLSX 36 kb)
DOI: 10.23668/psycharchives.4754
title: Dataset for: Instrument for Fear of Driving (IFD)

description: Psychometric Validation of the Instrument for Fear of Driving (IFD)
description: Dataset for: Fischer, C., Schröder, A., Taylor, J. E., & Heider, J. (2021). Measuring driving fear: Development and validation of the Instrument for Fear of Driving (IFD). European Journal of Psychological Assessment. Advance online publication. https://doi.org/10.1027/1015-5759/a000683
description: Presently, there is no instrument to support the diagnosis of driving fear and its severity. To enable a reliable and valid diagnosis, the 5-item German-language Instrument for Fear of Driving (IFD) was developed. The items, by DSM-5 criteria for a specific phobia, measure the emotional, cognitive, and physiological components of driving fear as well as the degree of avoidance and impairment. The present paper comprises two studies that describe the development of the IFD and its psychometric properties. In Study 1, the IFD was administered to 810 non-clinical participants in an online survey and demonstrated good reliability and construct validity. In Study 2, fifty-four people with a clinical diagnosis, including clinically relevant driving fear, completed the IFD and a clinical interview. The IFD demonstrated good sensitivity and specificity, and a cut-off score resulted in 95% sensitivity and 97% specificity. While the findings are preliminary and further studies with larger samples are needed, the IFD is a promising screening instrument for driving fear and its severity.
DOI: 10.15468/dl.gsun3n
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus brachyptera Engelm."
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037811-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619205_d8.v1
title: Additional file 8: of Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii

description: Contig and singleton annotations. (XLSX 8403 kb)
DOI: 10.6084/m9.figshare.c.3619208_d4.v1
title: Additional file 18: Table S6. of Altered gut microbiota in Rett syndrome

description: Correspondences among deposited metagenomics data and samples, unrarefied OTU tables and taxonomic classifications of the 16S and ITS1 datasets. (XLSX 449Â kb)
DOI: 10.6084/m9.figshare.c.3619217_d2.v1
title: Additional file 1: Table S1. of Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600Â k genotyping array

description: Table showing family, individual, and sex identification for study samples. (XLSX 37 kb)
DOI: 10.17863/cam.34876
title: Research data supporting "Multimodal imaging of brain connectivity reveals predictors of individual decision strategy in statistical learning"

description: Behavioural data, resting-state fMRI connectivity data and graph metrics data (see supporting data description .doc file for more information)
DOI: 10.6084/m9.figshare.c.3619223_d3.v1
title: Additional file 3: of Integrative regression network for genomic association study

description: Genes With Node Degree 4 and above. This file provides a list of methylation and mRNA genes, those were collected from the highly connected networks (fused) of different cancer profiles. (ZIP 32Â kb)
DOI: 10.17863/cam.96374
title: Patient experiences of follow-up care after kidney cancer surgery: focus group study dataset

description: This data was collected as part of a study exploring patient experiences of follow-up care after kidney cancer surgery. Participants were invited to focus groups in which they discussed their experiences. Prior to the focus groups, each participant also completed a short survey. The data includes anonymised survey responses and the pseudo-anonymised transcripts of each focus group. As consent was not given to share publically it is not possible to add the data to the repository. Instead, the data are stored within the Primary Care Unit and researchers can request access by contacting Dr Juliet Usher-Smith (jau20@medschl.cam.ac.uk) or PCU_DATA@medschl.cam.ac.uk. Applicants will be required to complete a Data Access Agreement that will indicate the criteria for data access and conditions for research use and will incorporate privacy and confidentiality standards to ensure data security. A copy of the questionnaire and participant information sheet are accessible.
DOI: 10.6084/m9.figshare.c.3619355_d2.v1
title: Additional file 6: of Derivation of consensus inactivation status for X-linked genes from genome-wide studies

description: BED file used to make a UCSC browser track of the XCI domains. This file was used to generate Fig. 4a and colors correspond to Fig. 4a. (BED 5 kb)
DOI: 10.6084/m9.figshare.c.3619361_d2.v1
title: Additional file 2: of Prognostic relevance of autophagy-related markers LC3, p62/sequestosome 1, Beclin-1 and ULK1 in colorectal cancer patients with respect to KRAS mutational status

description: Raw data converted from SPSS to Excel. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3619343_d3.v1
title: Additional file 3 of A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

description: Table S3. Classification Test Non-Binders. Set of non-binders in the test set including computational analysis. The peptides in Column A represent the test data set, sorted by Column B. The highest measured values (Max IVIG) are given in Column B, in Column C (mBuffer) the mean of secondary antibody control, and in Column D (mIVIG) the mean of all IVIG measures. In Column E, the sum of all computational methods are summed up whose predictions were correct as outlined in the remaining columns, as in Additional file 2: Table S2. (XLS 1218 kb)
DOI: 10.17863/cam.27720
title: PCOS summary statistics

description: This file contains data relating to the analysis discussed in "Large-Scale Genome-Wide Meta Analysis of Polycystic Ovary Syndrome Suggests Shared Genetic Architecture for Different Diagnosis Criteria." The data presented in this file is for the analysis of any diagnostic criteria, excluding the self-report based data from 23andMe. The file has the followin headers: MarkerName Effect_allele Other_allele EAF Effect [frd23@b08 PCOS]$ more PCOS_summary_data_19092018_README.txt This file contains data relating to the analysis discussed in "Large-Scale Genome-Wide Meta Analysis of Polycystic Ovary Syndrome Su ggests Shared Genetic Architecture for Different Diagnosis Criteria." The data presented in this file is for the analysis of any diagnostic criteria, excluding the self-report based data from 23andMe. The file has the followin headers: MarkerName Effect_allele Other_allele EAF Effect StdErr Pvalue TotalSampleSize The data reported in this sheet has been truncated to 2 significant figures.
DOI: 10.17863/cam.95259
title: Research data supporting "Giant optomechanical spring effect in plasmonic nano- and picocavities probed by surface-enhanced Raman scattering"

description: This repository contains research data for all figures of the manuscript. This includes optomechanical simulations of plasmonic nanocavities and experimental SERS spectra from both NPoM nanocavities and SPARK picocavities. All data are provided in .txt files, space separated, with columns labelled in first row. The data are organized in folders for each figure, with individual files for each figure panel containing data. All further information is contained in the captions of the manuscript.
DOI: 10.6084/m9.figshare.c.3619343_d4.v1
title: Additional file 1 of A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

description: Table S1. Binding training data. Training set of measured binding affinities. This collection of peptides was used to train the Pythia classifier. (TXT 260 kb)
DOI: 10.6084/m9.figshare.c.3619355_d5.v1
title: Additional file 5: of Derivation of consensus inactivation status for X-linked genes from genome-wide studies

description: BED file used to make a UCSC browser track with color coded consensus XCI status calls for each gene on the X (excluding genes with no XCI status calls). This file was used to generate Fig. 4a and colors correspond to Fig. 4a. (BED 39 kb)
DOI: 10.6084/m9.figshare.c.3619379_d1.v1
title: Additional file 1: of Low level of MAp44, an inhibitor of the lectin complement pathway, and long-term graft and patient survival; a cohort study of 382 kidney recipients

description: Biomarkers levels in quartiles. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3619343_d5.v1
title: Additional file 2 of A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

description: Table S2. Classification Test Binders. Set of binders in the test set including computational analysis. The peptides in Column A represent the test data set, sorted by Column B. The highest measured values (MaxIVIG) are given in Column B, in Column C (mBuffer) the mean of secondary antibody control, and in Column D (mIVIG) the mean of all IVIG measures. In Column E, the sum of all computational methods are summed up whose predictions were correct as outlined in the remaining columns, where the EL-Manzalawy, LuĹĄtrek, PWM, Pythia, Barbarini et al. [2] (Pavia), and PWM2 methods are given. (XLS 1218 kb)
DOI: 10.6084/m9.figshare.c.3619355_d6.v1
title: Additional file 1: Table S1. of Derivation of consensus inactivation status for X-linked genes from genome-wide studies

description: Our consensus XCI status calls for all genes on the X chromosome. The consensus calls from this study are under the column labeled Balaton consensus calls. The data used for the rest of the analyses in this article are also included as columns. The second sheet has descriptions of each column. (XLSX 316 kb)