cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/d1.2113
title: Extended data Figure 2 -Comparative profile of percentage identity of CaORC proteins with other yeasts.

description: Comparative profile of percentage identity of CaORC proteins with other yeasts. The hexameric ORC complex containing ORC1-6 protein sequences are compared individually with diverse yeast species whose genome database is publicly available (Priyam et al., 2019, Shen et al., 2016) and their percent identity is plotted using Graphpad Prism. (A) Percent identity of 104 hits of  ORC1 sequences. (B) Percent identity of 86 hits of ORC2 sequences. (C) Percent identity of 90 hits of  ORC3 sequences (D). Percent identity of 104 hits of ORC4 sequences. (E)Percent identity of 88 hits of  ORC5 sequences. (F) Percent identity of 69 hits of ORC6 sequences.
description: Related Publication:
Identification and in silico analysis of the origin recognition complex in the human fungal pathogen Candida albicans

Sreedevi Padmanabhan Molecular Biology Laboratory, Veer Bahadur Singh Purvanchal University, Jaunpur- 222003, Uttar Pradesh, India.

microPublication Biology

2021-09-13

https://doi.org/10.17912/micropub.biology.000465
eng
description: Contact person: Sreedevi Padmanabhan sreepbc@gmail.com
DOI: 10.22002/d1.2112
title: Extended data Figure 1 – SNAP2 results of CaORC4

description: SNAP2 results of CaORC4. Analysis of CaORC4 protein sequence in SNAP299 demonstrates that the tyrosine (Y273) marked with a black arrow to be affected with high score and accuracy which means that this residue is indispensable and any mutation of this residue affects the function of the protein. The table lists the score and the percent accuracy of the prediction.
description: Related Publication:
Identification and in silico analysis of the origin recognition complex in the human fungal pathogen Candida albicans

Sreedevi Padmanabhan Molecular Biology Laboratory, Veer Bahadur Singh Purvanchal University, Jaunpur- 222003, Uttar Pradesh, India.

microPublication Biology

2021-09-13

https://doi.org/10.17912/micropub.biology.000465
eng
description: Contact person: Sreedevi Padmanabhan sreepbc@gmail.com
DOI: 10.22002/d1.2100
title: Supplemental Materials for the Atlas of Bacterial and Archaeal Cell Structure

description: Supplemental materials (pdb files and images) for version 2.0 of "The Atlas of Bacterial & Archaeal Cell Structure" by Catherine M. Oikonomou & Grant J. Jensen
DOI: 10.22002/d1.209
title: Orange-brown jasper spectrum

description: Jasper, orange-brown, California. This is a reflectance spectrum off a polished slab.
DOI: 10.22002/d1.208
title: Red jasper spectrum

description: Jasper, red, Crab lake, Labrador, colored by hematite. This is a reflectance spectrum off a polished slab.  The color comes from small inclusions of hematite, Fe2O3, in the quartz.
DOI: 10.22002/d1.2078
title: Lemon Creek Glacier 2017 Seismic Array

description: Seismic and hydrologic data from 2017 seismic node deployment on Lemon Creek Glacier, Alaska
DOI: 10.22002/d1.2077
title: Data for "InSight Rock Size-frequency Distributions on Mars"

description: This file describes data related to Golombek et al. 2021 submission "InSight Rock Size-frequency Distributions on Mars." This work was performed at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (80NM0018D0004). Questions regarding these data or the paper should be directed to Matthew.P.Golombek@jpl.nasa.gov or Nathan.R.Williams@jpl.nasa.gov or atrussell@caltech.edu.

This .zip archive contains data used in the analyses contained within the paper and its figures.

Listing of files:

- D_LRGBI0160XILT030100ORRAS__1MM_10MM1.tif & *.tfw: Orthoimage mosaic derived from stereo IDC images, with a radius from center of 10 meters and cell size of 1 millimeter per pixel. The *.tif contains 3 bands (RGB) of 16-bit unsigned integer reflectance data, and the *.tfw is an associated world file containing spatial referencing information of the image in site frame.

- D_LRGBI0160XDEM030100ORRAS__1MM_10MM1.tif & *.tfw: Digital Elevation Model (DEM) mosaic derived from stereo IDC images with +Z-down spacecraft convention, with a radius from center of 10 meters and cell size of 1 millimeter per pixel. The *.tif contains 1 band of 32-bit float elevation data with units of meters, and the *.tfw is an associated world file containing spatial referencing information of the image in site frame.

- D_LRGBI0160XILT030100ORRAS__5MM_35MM1.tif & *.tfw: Orthoimage mosaic derived from stereo IDC images, with a radius from center of 35 meters and cell size of 5 millimeters per pixel. The *.tif contains 3 bands (RGB) of 16-bit unsigned integer reflectance data, and the *.tfw is an associated world file containing spatial referencing information of the image in site frame.

- D_LRGBI0160XDEM030100ORRAS__5MM_35MM1.tif & *.tfw: Digital Elevation Model (DEM) mosaic derived from stereo IDC images with +Z-down spacecraft convention, with a radius from center of 35 meters and cell size of 5 millimeters per pixel. The *.tif contains 1 band of 32-bit float elevation data with units of meters, and the *.tfw is an associated world file containing spatial referencing information of the image in site frame.

- InSight_CFAData.xlsx: Spreadsheet containing rock diameters, cumulative fractional areas, and cumulative number of rocks per square meter for rocks measured in the near and far fields.
description: Related Publication:
InSight Rock Size-frequency Distributions on Mars

Golombek, Matthew JPL

Earth and Space Science
eng
DOI: 10.22002/d1.2075
title: Specious Art Converted Counts for Specious Art SMART-seq VMH

description: Raw count csv for SMART-seq VMH (converted from .rda)
DOI: 10.22002/d1.2073
title: Specious Art 10x VMH Raw Counts

description: Raw count matrix for 10x VMH Neurons
DOI: 10.22002/d1.2076
title: Regeneration data - Jellyfish

description: Abrams et al., 2020 (doi: https://doi.org/10.1101/2020.11.21.392720). This dataset contains the raw images analyzed and quantified for generating Figure 3 and the associated supplementary figures. The czi files can be opened and analyzed using the Zeiss Zen software or the freeware Fiji. All images were taken at the same magnification. See the manuscript for more technical details.
description: Related Publication:
A conserved strategy for inducing appendage regeneration

Lea Goentoro California Institute of Technology

biorXiv

2020-11-22

https://doi.org/10.1101/2020.11.21.392720
eng
description: Contact person: Lea Goentoro goentoro@caltech.edu
DOI: 10.22002/d1.2072
title: Specious Art 10x VMH Log Counts

description: Log count matrix from 10x VMH Neurons dataset
DOI: 10.22002/d1.2071
title: Specious Art SMART-Seq VMH Log Counts

description: Log count matrix for SMART-Seq VMH Neurons
DOI: 10.22002/d1.2070
title: Specious Art SMART-Seq VMH Raw Counts

description: SMART-seq VMH Neurons raw counts matrix
DOI: 10.22002/d1.2069
title: Specious Art Developing Mouse Brain Gene Names

description: Gene names npy file for Developing Mouse Brain, La Manno et al. 2020
DOI: 10.22002/d1.2068
title: Specious Art SMART-Seq VMH Gene Names

description: SMART-Seq VMH Nerons data Gene Names
DOI: 10.22002/d1.2067
title: Specious Art SMART-Seq VMH Metadata

description: Metadata for SMART-seq VMH neurons data
DOI: 10.22002/d1.2066
title: Specious Art 10x VMH Metadata Genes

description: Gene metadata for 10x VMH Neurons in Specious Art
DOI: 10.22002/d1.2065
title: Specious Art 10x VMH Metadata

description: Cell Metadata csv for 10x VMH Neurons data in Specious Art
DOI: 10.22002/d1.2064
title: Specious Art MERFISH Counts

description: Count matrix (h5ad file) for MERFISH MOp dataset in Specious Art
DOI: 10.22002/d1.2063
title: Specious Art MERFISH Metadata

description: Metadata for the MERFISH MOp dataset in Specious Art
DOI: 10.22002/d1.2062
title: Specious Art Pseudotime Lineage Gene Metadata

description: Gene metadata Packer and Zhu et al dataset, for pseudotime analysis
DOI: 10.22002/d1.2054
title: Extended Data, Table 2: Statistics for survival assays.

description: Statistics for survival assays.
description: Related Publication:
LIR-1 and PDTF-1 regulate the permeability barrier function of the C. elegans cuticle

Varsha Singh Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, India 560012

microPublication Biology

https://doi.org/10.17912/micropub.biology.000434
eng
description: Contact person: Varsha Singh varsha@iisc.ac.in
DOI: 10.22002/d1.2053
title: Extended Data, Table 1: List of 286 Transcription factors RNAi clones tested for Hoechst 33258 permeability

description: List of 286 Transcription factors RNAi clones tested for Hoechst 33258 permeability
description: Related Publication:
LIR-1 and PDTF-1 regulate the permeability barrier function of the C. elegans cuticle

Varsha Singh Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, India 560012

microPublication Biology

https://doi.org/10.17912/micropub.biology.000434
eng
description: Contact person: Varsha Singh varsha@iisc.ac.in
DOI: 10.22002/d1.2049
title: OCO-3 B10 Fwd(r01) Evaluation XCO2 Lite Files

description: These are lite files similar to the data products that OCO-3 delivers to NASA. This collection were produced from the testing data with the forward stream code for some days in May and June 2021. For full documentation, look for the user's guide at the GES_DISC.
description: Contact person: Chris O'Dell Christopher.ODell@colostate.edu
DOI: 10.22002/d1.2050
title: Single-crystal NRIXS of delta-(Al,Fe)OOH

description: The data set comprises 6 nuclear resonant inelastic X-ray scattering (NRIXS) spectra that have been recorded on single crystals of delta-(Al,Fe)OOH. For each of the three crystals, X1, X2, and X3, two spectra have been recorded with different orientations. The orientations are specified in terms of the lattice planes (hkl) that were placed perpendicular to the incident X-ray beam. All NRIXS spectra were recorded at beamline 3-ID-B of the Advanced Photon Source (APS) at Argonne National Laboratory and at ambient conditions. The spectra are organized into 6 project folders, one for each spectrum, that can be opened with the software PHOENIX (available at www.nrixs.com) to reproduce the analysis.
description: Related Publication:
Vibrational anisotropy of delta-(Al,Fe)OOH single crystals as probed by nuclear resonant inelastic X-ray scattering

Buchen, Johannes Seismological Laboratory, Division of Geological and Planetary Sciences, California Institute of Technology

Sturhahn, Wolfgang Seismological Laboratory, Division of Geological and Planetary Sciences, California Institute of Technology

Ishii, Takayuki Bayerisches Geoinstitut, Universität Bayreuth, Bayreuth, Germany

Jackson, Jennifer M. Seismological Laboratory, Division of Geological and Planetary Sciences, California Institute of Technology

European Journal of Mineralogy

2021
eng
DOI: 10.22002/d1.2045
title: Specious Art Metadata for Developing Mouse Brain Data

description: Metadata csv from dev_all.loom from La Manno et al., 2020
DOI: 10.22002/d1.2044
title: Specious Art Raw Counts for Developing Mouse Brain Data

description: Raw count matrix from dev_all.loom from La Manno et al., 2020
DOI: 10.22002/d1.2043
title: Specious Art Count Matrix for Developing Mouse Brain (La Manno et al 2020)

description: Log-normalized count matrix for dev_all.loom from La Manno et al 2020.
DOI: 10.22002/d1.20281
title: Crystallization Kinetics of Magnesium Sulfate Hydrate on Europa

description: Data behind figures for "Crystallization Kinetics of Vitreous Magnesium Sulfate Hydrate and Implications for Europa's Surface," submitted to Geophysical Research Letters
DOI: 10.22002/d1.20272
title: Kinetics of Methane Clathrate Substitution by Liquid Ethane

description: Raman data on the reaction between methane clathrate hydrate and liquid ethane at 1 bar and 155 K
DOI: 10.6073/pasta/6d31cf13a70d5e36da2378bf12d3091d
title: Phenologies of the Tabonuco Forest trees and shrubs

description: These data are being used to, among other things, (1) determine the seasonality of flowering and fruiting in Tabonuco forest and test hypotheses concerning the causation of seasonality (or lack thereof), (2) test the effect of annual variation in rainfall and other climatic variables on seed and fruit production of individual species, and (3) compare the relative dispersal of species on the Luquillo Forest Dynamics Plot by applying information on the spatial distribution of canopy trees to the data on seed and fruit fall. These data also serve as background information on the flowering and fruiting of individual species. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.22002/d1.20264
title: Table of Titan equatorial pits

description: Text file of Titan equatorial pit locations. Fields include: entry number, feature type, center latitude, center longitude, including latitude in 360E coordinates, region, number of SAPs, literature references where feature described
DOI: 10.22002/d1.20263
title: Table of Titan labyrinth terrain locations

description: Table of Titan labyrinth terrains estimated to contain at least one closed valley. Fields include entry#, labyrinth terrain type (included 3 letter code), labyrinth terrain locations (centroid coordinates (lat, lon, lon(360E)), key parameters (area_km2, percent closed valley area, average valley width an length in km, average closed valley area assuming 2:1 cell size, and estimated number of subsurface access points (SAPs)
DOI: 10.22002/d1.20262
title: Table of Titan empty steep sided depressions

description: data table with locations of empty steep-sided depressions on Titan. Fields are entry#, type_feature, latitude, longitude, and longitude (E360), number_SAPs in the feature
DOI: 10.22002/d1.20261
title: Table of Titan filled steep sided depressions

description: data table with locations of filled lakes on Titan. Fields are entry#, type_feature, latitude, longitude, and longitude (E360), number_SAPs in the feature
DOI: 10.22002/d1.20260
title: Table of Titan putative cryovolcanic pits

description: data table with a single entry for Sotra Patera cryovolcanic pit on Titan. fields are entry, type_feature, latitude, longidude, and longitude (E360), number_SAP, and literature reference
DOI: 10.22002/d1.20259
title: Single crystal CIF files for Confinement Effects Facilitate Low Concentration Carbon Dioxide Capture with Zeolites

description: This dataset includes CIF files for PNAS publication "Confinement Effects Facilitate Low Concentration Carbon Dioxide Capture with Zeolites"
DOI: 10.22002/d1.20256
title: Gravity Data For Southern California

description: Lists of gravity observations with one line per data point
DOI: 10.22002/d1.2025
title: STILT footprints of seven methane spikes and two background levels as of January 2021

description: The dataset includes the STILT footprints for the seven methane spikes as reported in Webster et al. (2018, 2021) and the two background signals detected before the sixth methane spike and after the seventh methane spike. Each footprint file is an average over the footprints from thirty-five (for Spikes 1-6 and the background level before Spike 6) or twenty-eight (for Spike 7 and the background level after Spike 7) STILT simulations. The domains and the spatial resolutions of the footprints are different, as indicated by d01, d03, or d05 in the file names.
DOI: 10.22002/d1.20249
title: Superconductivity in Magic-Angle Graphene Multilayers

description: #Data for Magic Angle Graphene Multilayers

This dataset contains the experimental data and analysis from the following paper:

Yiran Zhang*, Robert Polski*, Cyprian Lewandowski, Alex Thomson, Yang Peng, Youngjoon Choi, Hyunjin Kim, Kenji Watanabe, Takashi Taniguchi, Jason Alicea, Felix von Oppen, Gil Refael, and Stevan Nadj-Perge, "Promotion of Superconductivity in Magic-Angle Graphene Multilayers", see also ArXiv: 2112.09270


Excel and .txt sheets are processed experimental data for Fig.1 to Fig.4 in the main text and Fig S1 to Fig S13 in Supplementary Information. For main text data, please refer to Fig1.xlsx to Fig4.xlsx. Within each excel file, the spreadsheet name is the physical quantity of corresponding panel and the first row is the physical quantity and the unit. For Figures in Supplementary Information, please refer to folders named FigS1 to FigS13. Within each folder are excel or text file named the corresponding panel and its physical quantity with unit.

The raw data are included in the data folder, but it's unprocessed and only there for completeness. If you want to see the main text data and supplementary materials in a more organized form and in a context that's easier to understand, see the notebooks in the Jupyter Notebook folder. The analysis notebooks have been run sequentially to check that they work.
description: Related Publication:
Ascendance of Superconductivity in Magic-Angle Graphene Multilayers

2021-12-17
eng
DOI: 10.22002/d1.20234
title: Visual Knowledge Tracing Dataset

description: Contains images and human response data for a visual classification task on three datasets. Datasets are intended to serve as benchmark for visual knowledge tracing algorithms.
description: Related Publication:
Visual Knowledge Tracing

Neehar Kondapaneni Caltech

Pietro Perona Caltech

Oisin Mac Aodha University of Edinburgh

European Conference on Computer Vision (ECCV)

2022
eng
DOI: 10.22002/d1.2023
title: Intermittency factors dataset to accompany Hayden et al., 2021

description: The attached documents contain compilations of surveyed stream parameters, published sedimentary deposit values, and intermittency factors calculated in Hayden et al., 2021. All citations can be found in the References section of the accompanying Supplemental Information document. See files for additional description.
description: Related Publication:
Constraining the timespan of fluvial activity from the intermittency of sediment transport on Earth and Mars

Hayden, Alistair T Caltech

Lamb, Michael P Caltech

McElroy, Brandon J University of Wyoming

Geophysical Research Letters
eng
DOI: 10.22002/d1.20223
title: Extreme Differences in SARS-CoV-2 Omicron Viral Loads Among Specimen Types

description: Dataset provides de-identified results from the Caltech COVID-19 Study. See README document. 

IRB of the California Institute of Technology gave ethical approval for this work under IRB protocol #20-1026

Data analysis scripts can be accessed at:
https://github.com/reakan/relaunch_antigen
https://github.com/reakan/relaunch_pcr
DOI: 10.22002/d1.20196
title: AI/Data Science Chen Camp 22

description: Brain MoP data with variable genes for regression modeling for Chen summer camp
DOI: 10.22002/d1.20195
title: AI/Data Science Chen Camp 22

description: Mouse Brain MOP data for fitting count distributions for Chen summer camp
DOI: 10.22002/d1.2019
title: Bulk Clytia Medusa RNA (Mature Female)

description: Bulk RNA sequencing data from mature female Clytia medusae, two replicate organisms
DOI: 10.22002/d1.2018
title: 10X biology and sequencing model fit results

description: We fit subsets of data provided at https://data.caltech.edu/records/2017 using a Markov modeling of mRNA transcription, splicing, degradation, and sequencing. 
The following files are provided:

raw_results.tar.gz: raw result files output by fitting each dataset. These files should be analyzed by using the import_datasets functionality.
processed_results.tar.gz: a pickle dump of ResultData structures after importing the raw results, identifying the optimal grid point, a subset of genes by the chi-squared genes, and computing Hessians for all genes at the optimal grid point.
controls.tar.gz: a series of raw result files output by fitting the 10X 10k PBMC dataset with slightly different parameters. These are: 
--gg_210523_..._1.pickle: 1 search iteration, method of moments (MoM) initialization.
--gg_210523_..._2.pickle: 1 search iteration, random initialization.
--gg_210523_..._3.pickle: 20 search iterations, 1 at MoM and 19 at random parameter vectors.
--gg_210524_..._4.pickle: 20 search iterations, all at random starting points.
--gg_210628_..._4.pickle: Same as the first, but with a length-independent model of unspliced transcript sequencing, and identical bounds on spliced and unspliced sampling rates.
DOI: 10.22002/d1.2017
title: 10X spliced and unspliced gene count matrices

description: We processed a set of 10X datasets using kallisto|bustools. The archive contains filtered loom files. The scripts used to generate these files are provided at https://github.com/pachterlab/GP_2021_3/tree/master/processing_scripts.
DOI: 10.22002/d1.20151
title: Twisted Bilayer Graphene-WSe2 Heterostructure Datasets

description: This includes the raw measured data from an Oxford Triton fridge (most results) and Quantum Design PPMS. Use with the Jupyter notebooks made for sorting the data out and analyzing it.

The data is used in two papers: H. Arora, R. Polski, Y. Zhang, et al., "Superconductivity in metallic twisted bilayer graphene stabilized by WSe2", Nature 583, 379–384 (2020).

And another (soon to come out on the ArXiv) R. Polski, Y. Zhang, et al., "Hierarchy of symmetry breaking correlated phases in twisted bilayer graphene" (submitted)
description: Related Publication:
Superconductivity in metallic twisted bilayer graphene stabilized by WSe2

Arora, Harpreet California Institute of Technology

Polski, Robert California Institute of Technology

Zhang, Yiran California Institute of Technology

Thomson, Alex California Institute of Technology

Choi, Youngjoon California Institute of Technology

Kim, Hyunjin California Institute of Technology

Lin, Zhong University of Washington, Seattle

Wilson, Ilham Zakyu University of Washington, Seattle

Xu, Xiaodong University of Washington, Seattle

Chu, Jiun-Haw University of Washington, Seattle

Watanabe, Kenji National Institute for Materials Science, Japan

Taniguchi, Takashi National Institute for Materials Science, Japan

Alicea, Jason California Institute of Technology

Nadj-Perge, Stevan California Institute of Technology

Nature

2020-07-15

https://doi.org/10.1038/s41586-020-2473-8
eng
DOI: 10.22002/d1.20110
title: Caltech Multi-Distance Portraits  (CMDP)

description: A dataset of frontal portraits of 53 individuals spanning a number of attributes (sex, age, race, hair), each photographed from seven distances.
description: Related Publication:
Distance Estimation of an Unknown Person from a Portrait

Burgos-Artizzu, Xavier

Ronchi, Matteo Ruggero

Perona, Pietro

Proceedings of the European Conference on Computer Vision (ECCV)

2014-09-02

https://doi.org/10.1007/978-3-319-10590-1_21
eng
DOI: 10.22002/d1.20109
title: COCO-a

description: A large and well annotated dataset of actions on the current best image dataset for visual recognition, with rich annotations including all the actions performed by each person in the dataset, and the people and objects that are involved in each action, subject's posture and emotion, and high level visual cues such as mutual position and distance.
description: Related Publication:
Describing Common Human Visual Actions in Images

Ronchi, Matteo Ruggero Caltech

Perona, Pietro Caltech

Proceedings of the British Machine Vision Conference (BMVC)

2015-06-07

https://doi.org/10.48550/arXiv.1506.02203
eng
DOI: 10.22002/d1.20098
title: CUB-200-2011

description: CUB-200-2011 is an extended version of CUB-200, a challenging dataset of 200 bird species. The extended version roughly doubles the number of images per category and adds new part localization annotations. All images are annotated with bounding boxes, part locations, and attribute labels. Images and annotations were filtered by multiple users of Mechanical Turk.