cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6109104
title: CCG Starter Kits - Base SAND file for Asia

description: This file is the Base SAND file for Asia. This is published as part of the MethodsX paper titled <strong>How to put together a Starter Data Kit from scratch? An extensive methodology to compile zero-order energy transition models. </strong>The main goal of the files published for this paper is to develop a set of credible data and an initial investment model for several developing countries.
DOI: 10.5281/zenodo.6109103
title: CCG Starter Kits - Base SAND file for Asia

description: This file is the Base SAND file for Asia. This is published as part of the MethodsX paper titled <strong>How to put together a Starter Data Kit from scratch? An extensive methodology to compile zero-order energy transition models. </strong>The main goal of the files published for this paper is to develop a set of credible data and an initial investment model for several developing countries.
DOI: 10.5281/zenodo.6036252
title: CCG Starter Kit - List of Countries and Regions

description: This file maps the countries to their relevant region to decide which type of Base Sand file to use (Africa, South America or Asia). This is published as part of the MethodsX paper titled <strong>How to put together a Starter Data Kit from scratch? An extensive methodology to compile zero-order energy transition models.</strong> The main goal of the files published for this paper is to develop a set of credible data and an initial investment model for several developing countries.
DOI: 10.5281/zenodo.6036251
title: CCG Starter Kit - List of Countries and Regions

description: This file maps the countries to their relevant region to decide which type of Base Sand file to use (Africa, South America or Asia). This is published as part of the MethodsX paper titled <strong>How to put together a Starter Data Kit from scratch? An extensive methodology to compile zero-order energy transition models.</strong> The main goal of the files published for this paper is to develop a set of credible data and an initial investment model for several developing countries.
DOI: 10.5281/zenodo.6303715
title: Raw Data for the article: Clinical and Molecular-Based Approach in the Evaluation of Hepatocellular Carcinoma Recurrence after Radical Liver Resection

description: <strong>Background: </strong>Hepatic resection remains the treatment of choice for patients with early-stage HCC with preserved liver function. Unfortunately, however, the majority of patients develop tumor recurrence. While several clinical factors were found to be associated with tumor recurrence, HCC pathogenesis is a complex process of accumulation of somatic genomic alterations, which leads to a huge molecular heterogeneity that has not been completely understood. The aim of this study is to complement potentially predictive clinical and pathological factors with next-generation sequencing genomic profiling and loss of heterozygosity analysis. <strong>Methods: </strong>124 HCC patients, who underwent a primary hepatic resection from January 2016 to December 2019, were recruited for this study. Next-generation sequencing (NGS) analysis and allelic imbalance assessment in a case-control subgroup analysis were performed. A time-to-recurrence analysis was performed as well by means of Kaplan-Meier estimators. <strong>Results: </strong>Cumulative number of HCC recurrences were 26 (21%) and 32 (26%), respectively, one and two years after surgery. Kaplan-Meier estimates for the probability of recurrence amounted to 37% (95% C.I.: 24-47) and to 51% (95% C.I.: 35-62), after one and two years, respectively. Multivariable analysis identified as independent predictors of HCC recurrence: hepatitis C virus (HCV) infection (HR: 1.96, 95%C.I.: 0.91-4.24, <em>p</em> = 0.085), serum bilirubin levels (HR: 5.32, 95%C.I.: 2.07-13.69, <em>p</em> = 0.001), number of nodules (HR: 1.63, 95%C.I.: 1.12-2.38, <em>p</em> = 0.011) and size of the larger nodule (HR: 1.11, 95%C.I.: 1.03-1.18, <em>p</em> = 0.004). Time-to-recurrence analysis showed that loss of heterozygosity in the <em>PTEN</em> loci (involved in the PI3K/AKT/mTOR signaling pathway) was significantly associated with a lower risk of HCC recurrence (HR: 0.35, 95%C.I.: 0.13-0.93, <em>p</em> = 0.036). <strong>Conclusions: </strong>multiple alterations of cancer genes are associated with HCC progression. In particular, the evidence of a specific AI mutation presented in 20 patients seemed to have a protective effect on the risk of HCC recurrence.
DOI: 10.5281/zenodo.6303714
title: Raw Data for the article: Clinical and Molecular-Based Approach in the Evaluation of Hepatocellular Carcinoma Recurrence after Radical Liver Resection

description: <strong>Background: </strong>Hepatic resection remains the treatment of choice for patients with early-stage HCC with preserved liver function. Unfortunately, however, the majority of patients develop tumor recurrence. While several clinical factors were found to be associated with tumor recurrence, HCC pathogenesis is a complex process of accumulation of somatic genomic alterations, which leads to a huge molecular heterogeneity that has not been completely understood. The aim of this study is to complement potentially predictive clinical and pathological factors with next-generation sequencing genomic profiling and loss of heterozygosity analysis. <strong>Methods: </strong>124 HCC patients, who underwent a primary hepatic resection from January 2016 to December 2019, were recruited for this study. Next-generation sequencing (NGS) analysis and allelic imbalance assessment in a case-control subgroup analysis were performed. A time-to-recurrence analysis was performed as well by means of Kaplan-Meier estimators. <strong>Results: </strong>Cumulative number of HCC recurrences were 26 (21%) and 32 (26%), respectively, one and two years after surgery. Kaplan-Meier estimates for the probability of recurrence amounted to 37% (95% C.I.: 24-47) and to 51% (95% C.I.: 35-62), after one and two years, respectively. Multivariable analysis identified as independent predictors of HCC recurrence: hepatitis C virus (HCV) infection (HR: 1.96, 95%C.I.: 0.91-4.24, <em>p</em> = 0.085), serum bilirubin levels (HR: 5.32, 95%C.I.: 2.07-13.69, <em>p</em> = 0.001), number of nodules (HR: 1.63, 95%C.I.: 1.12-2.38, <em>p</em> = 0.011) and size of the larger nodule (HR: 1.11, 95%C.I.: 1.03-1.18, <em>p</em> = 0.004). Time-to-recurrence analysis showed that loss of heterozygosity in the <em>PTEN</em> loci (involved in the PI3K/AKT/mTOR signaling pathway) was significantly associated with a lower risk of HCC recurrence (HR: 0.35, 95%C.I.: 0.13-0.93, <em>p</em> = 0.036). <strong>Conclusions: </strong>multiple alterations of cancer genes are associated with HCC progression. In particular, the evidence of a specific AI mutation presented in 20 patients seemed to have a protective effect on the risk of HCC recurrence.
DOI: 10.5281/zenodo.6303734
title: data set related to article Neural Changes Induced by a Speech Motor Treatment in Childhood Apraxia of Speech A Case Series

description: This record contains raw data related to article Neural Changes Induced by a Speech Motor Treatment in Childhood Apraxia of Speech A Case Series
DOI: 10.5281/zenodo.6303733
title: data set related to article Neural Changes Induced by a Speech Motor Treatment in Childhood Apraxia of Speech A Case Series

description: This record contains raw data related to article Neural Changes Induced by a Speech Motor Treatment in Childhood Apraxia of Speech A Case Series
DOI: 10.5281/zenodo.6303721
title: Raw Data for the article: Liver transplantation for unresectable intrahepatic cholangiocarcinoma: an Italian experience

description: Intrahepatic cholangiocarcinoma (iCCA) is an aggressive form of primary liver cancer treated exclusively with surgery. Its incidence in the western world is growing lately [1] and the overall 5-year survival is poor due to late diagnosis, since patients rarely present a jaundice differently from patients affected by perihilar cholangiocarcinoma. Ideally liver resection and regional lymphadenectomy are the best treatments; however, these are unfortunately connotated by a 75% recurrence rate 5 years after surgery. Systemic chemotherapy offers a minimal response, as well as loco-regional therapy such as selective internal radiotherapy (SIRT), with a survival varying from 11 to 15 months between the two therapies
DOI: 10.5281/zenodo.6303720
title: Raw Data for the article: Liver transplantation for unresectable intrahepatic cholangiocarcinoma: an Italian experience

description: Intrahepatic cholangiocarcinoma (iCCA) is an aggressive form of primary liver cancer treated exclusively with surgery. Its incidence in the western world is growing lately [1] and the overall 5-year survival is poor due to late diagnosis, since patients rarely present a jaundice differently from patients affected by perihilar cholangiocarcinoma. Ideally liver resection and regional lymphadenectomy are the best treatments; however, these are unfortunately connotated by a 75% recurrence rate 5 years after surgery. Systemic chemotherapy offers a minimal response, as well as loco-regional therapy such as selective internal radiotherapy (SIRT), with a survival varying from 11 to 15 months between the two therapies
DOI: 10.23729/7bfef43e-7a1e-4713-98fe-4b08ec525976
title: Calcite Fracture

description: A calcite fracture imaged for EU Horizon 2020 project EURAD (No. 847593) as part of the subproject FUTURE (Fundamental understanding of radionuclide retention). This rock was scanned to better understand the migration of radionuclides in crystalline rock. HZDR, Germany, and NRI, Czech Republic, are partners in the study. University of Helsinki has conducted C-14-PMMA and SEM analysis of the same rock and PET-scans have been conducted at HZDR Leipzig. XCT data will be combined with other data later on. Preview dataset found at https://doi.org/10.23729/404a0d09-4747-4e34-83c4-a5afbeb95987 . To obtain data, please contact fairdata-pas@gtk.fi .
DOI: 10.5286/isis.e.rb2210072
title: Using neutron reflectometry to understand enhanced dynamic linewidth in a magnetic trilayer device

description: We have studied the magnetic damping of CoFe/Ag/CoFe multilayer films using Ferromagnetic Resonance (FMR) spectroscopy. There is an anomalous linewidth enhancement, which oscillates with a period of around 1 nm as the Ag thickness is increased. One interpretation is related to the interlayer coupling which may be ferromagnetic or antiferromagnetic due to the well-known Ruderman-Kittel-Kasuya-Yosida (RKKY) mechanism. Theoretical studies predict such a dynamic exchange coupling across a non-magnetic spacer to affect the resonance linewidth; it is feasible that the enhanced damping found in CoFe/Ag/CoFe relies on the RKKY coupling. The aim of this experiment is to determine the RKKY coupling strength from depth-resolved vector magnetometry using polarised neutron reflectometry with polarisation analysis, to clarify interpretation of the anomalous linewidth behaviour in CoFe/Ag/CoFe.
DOI: 10.5286/isis.e.rb2210072-1
title: Using neutron reflectometry to understand enhanced dynamic linewidth in a magnetic trilayer device

description: We have studied the magnetic damping of CoFe/Ag/CoFe multilayer films using Ferromagnetic Resonance (FMR) spectroscopy. There is an anomalous linewidth enhancement, which oscillates with a period of around 1 nm as the Ag thickness is increased. One interpretation is related to the interlayer coupling which may be ferromagnetic or antiferromagnetic due to the well-known Ruderman-Kittel-Kasuya-Yosida (RKKY) mechanism. Theoretical studies predict such a dynamic exchange coupling across a non-magnetic spacer to affect the resonance linewidth; it is feasible that the enhanced damping found in CoFe/Ag/CoFe relies on the RKKY coupling. The aim of this experiment is to determine the RKKY coupling strength from depth-resolved vector magnetometry using polarised neutron reflectometry with polarisation analysis, to clarify interpretation of the anomalous linewidth behaviour in CoFe/Ag/CoFe.
DOI: 10.34740/kaggle/dsv/3238759
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.6303998
title: Theoretical and Experimental database for corannulene:water aggregates in a rare gas matrix. Structures and IR spectra.

description: This database is linked to the article entitled "Water clusters in interaction with corannulene in a rare gas matrix: structures, stability and IR spectra" by Leboucher et al. submitted to "Photochem" on March 1st 2022. Theoretical results can be found in the following directories:<br> - Geoms which contains the DFTB/FF optimized structures reported in Figures 2 to 4 of the manuscript (the last column of the files must not be taken into account)<br> - IR_harm which contains the IR harmonic data for these structures (first column: wavenumbers in cm-1, second column: intensities in km/mol)<br> - Spect_10K which contains the dynamics spectra as reported in Figures 5 to 7 Experimental results can be found in the directory Experimental, with spectra in two columns (first column: wavenumber in cm-1, second column: absorbance). Data have been corrected for atmospheric water vapor.
DOI: 10.48510/fk2/zdnph3/46ga8g
title: Prognostic Factors for COVID-19 Vaccination Behavior in Latvian Population.tab

description: :unav
DOI: 10.48510/fk2/zdnph3
title: Prognostic Factors for COVID-19 Vaccination Behavior in Latvian Population

description: The data set contains the data used in the article “Prognostic Factors for COVID-19 Vaccination Behaviour in Latvian Population”. These data are part of the survey of the National Research Program INTERFRAME-LV. The dataset contains information on COVID-19 vaccination behaviour, motivation for vaccination, institutional trust, the perceived social support from the immediate family and acquaintances, perceived vulnerability, fear of COVID 19, age and level of education of respondents.
DOI: 10.5281/zenodo.3992540
title: Spectroscopic and XRD data from PHS

description: Visible and Near infrared as well as Mid infrared spectroscopic data from PHS deposit along with their XRD analysis.
DOI: 10.5281/zenodo.6303999
title: Spectroscopic data from PHS (lab characterization)

description: Visible and Near infrared spectroscopic data from PHS deposit taken in lab condition.
DOI: 10.5281/zenodo.5565177
title: Supplementary materials (set 2 of 2) in support of "Signalling Emotions with a Breathing Soft Robot" (Data set and materials used for human-robot interaction experiment)

description: Supplementary materials (set 2 of 2) in support of "Signalling Emotions with a Breathing Soft Robot" authored by Troels Aske Klausen, Ulrich Farhadi, Evgenios Vlachos, and Jonas Jørgensen. Contents of set 2:<br> - Data set and materials used for the human-robot interaction experiment and for data analysis Files:<br> - "Questionnaire.pdf": Questionnaire used for data collection.<br> - "Video links.txt": Weblinks to stimuli videos used.<br> - "Data set.xls": Collected raw data.<br> - "Matlab_DataAnalysis.mlx": Matlab script used to analyze raw data.<br> - "Linear_Arousal.png": Linear fit between the scoring of arousal and BPM.<br> - "Linear_Dominance.png": Linear fit between the scoring of dominance and BPM.<br> - "Linear_Pleasure.png": Linear fit between the scoring of pleasure and BPM. The experiment procedure is described in the paper.<br> The soft robot used for the experiment is open source and can be manufactured using design files available on Zenodo: 10.5281/zenodo.5565201
DOI: 10.5281/zenodo.5565176
title: Supplementary materials (set 2 of 2) in support of "Signalling Emotions with a Breathing Soft Robot" (Data set and materials used for human-robot interaction experiment)

description: Supplementary materials (set 2 of 2) in support of "Signalling Emotions with a Breathing Soft Robot" authored by Troels Aske Klausen, Ulrich Farhadi, Evgenios Vlachos, and Jonas Jørgensen. Contents of set 2:<br> - Data set and materials used for the human-robot interaction experiment and for data analysis Files:<br> - "Questionnaire.pdf": Questionnaire used for data collection.<br> - "Video links.txt": Weblinks to stimuli videos used.<br> - "Data set.xls": Collected raw data.<br> - "Matlab_DataAnalysis.mlx": Matlab script used to analyze raw data.<br> - "Linear_Arousal.png": Linear fit between the scoring of arousal and BPM.<br> - "Linear_Dominance.png": Linear fit between the scoring of dominance and BPM.<br> - "Linear_Pleasure.png": Linear fit between the scoring of pleasure and BPM. The experiment procedure is described in the paper.<br> The soft robot used for the experiment is open source and can be manufactured using design files available on Zenodo: 10.5281/zenodo.5565201
DOI: 10.5281/zenodo.4000211
title: GAP interatomic potential for amorphous carbon

description: <strong>Gaussian approximation potential</strong> (GAP) for <strong>amorphous carbon</strong> [1]. It has been fitted with <strong>QUIP/GAP</strong> [1,2] by recomputing the <strong>a-C database of Deringer and Csányi</strong> [3] at the <strong>PBE+MBD</strong> level of theory [4,5] using the VASP code [6,7,8]. This potential uses <strong>2-body</strong> (distance_2b) and <strong>3-body</strong> (angle_3b) descriptors [3] plus <strong>SOAP-type descriptors</strong> (soap_turbo) [9,10], as implemented in the <strong>TurboGAP</strong> code [11]. The files can be used both with QUIP/GAP (compiled with the TurboGAP libraries) and TurboGAP. More details are available in the following publication: <strong>Structure and Pore Size Distribution in Nanoporous Carbon</strong><br> Yanzhou Wang, Zheyong Fan, Ping Qian, Tapio Ala-Nissila, and Miguel A. Caro<br> Chem. Mater. 34, 617 (2022) <strong>References</strong> A.P. Bartók, M.C. Payne, R. Kondor, and G. Csányi. Phys. Rev. Lett. 104, 136403 (2010). LibAtoms: https://libatoms.github.io V.L. Deringer and G. Csányi. Phys. Rev. B 95, 094203 (2017). J.P. Perdew, K. Burke, and M. Ernzerhof. Phys Rev. Lett. 77, 3865 (1996). A. Tkatchenko, R.A. Di Stasio, R. Car, and M. Scheffler, Phys. Rev. Lett. 108, 236402 (2012). VASP: http://vasp.at G. Kresse and J. Furthmüller. Phys. Rev. B 54, 11169 (1996). T. Bucko, S. Lebègue, T. Gould, and J.G. Ángyán, J. Phys.: Condens. Matter 28, 045201 (2016). A.P. Bartók, R. Kondor, and G. Csányi. Phys. Rev. B 87, 184115 (2013). M.A. Caro. Phys. Rev. B 100, 024112 (2019). TurboGAP: http://turbogap.fi
DOI: 10.5519/qd.jc4fndzl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (543 records)
DOI: 10.6084/m9.figshare.19248926
title: Non-mycorrhizal fungal presence within roots increases across an urban gradient in Berlin

description: The dataset used in the study "Non-mycorrhizal fungal presence within roots increases across an urban gradient in Berlin". Dataset includes:Site nameSite location (longitude and latitude)Dependent variables:AM-fungal presence (%)Arbuscule presence (%)Vesicle presence (%)Log vesicle presence (%)Coil presence (%)Log coil presence (%)Non-AM fungal presence (%)Root hair presence (%)Independent variables:PCA axis 1 - represeneting urbanityPCA axis 2 - representing soil chemistryPCA axis 3 - representing site connectivity
DOI: 10.5258/soton/d2137
title: Dataset for paper "Time-averaged velocity and scalar fields of the flow over and around a group of cylinders: A model experiment for canopy flows"

description: This archive contains the minimal dataset necessary to reproduce the plots reported in the paper "Time-averaged velocity and scalar fields of the flow over and around a group of cylinders: A model experiment for canopy flows", published in Flow. Data for all figures, as well as scripts necessary to reproduce these, are included in the archive.
DOI: 10.21227/ac8y-t487
title: Case Study Data

description: Fictional but realistic data for electricity generation gas-fired units
DOI: 10.34943/fae38bba-915b-4880-8c20-23dfb1b9d80a
title: Bullseye Accelerometer Deployed 2017-06-08

description: The Nanometrics TitanEA (S/N 000647) was deployed on 2017-06-08 at Bullseye. Bullseye is a location at Clayoquot Slope, where gas hydrates, seafloor cold seeps, and hydrate dynamics are observed. This device is a Accelerometer. Accelerometers are instruments that measure accelerations. Acceleration can be static such as gravity pulling objects toward the earth, or dynamic as caused by oscillatory movements of the instrument. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.19249061
title: Datos_TEDS_M_Colombia.csv

description: TEDS-D
DOI: 10.6084/m9.figshare.19249061.v1
title: Datos_TEDS_M_Colombia.csv

description: TEDS-D
DOI: 10.6084/m9.figshare.19248710
title: Assessing causality between bone mineral density with cardio- and cerebrovascular diseases: a bidirectional Mendelian randomization study

description: <b>Assessing causality between </b><b>bone mineral density</b><b> with cardio- and cerebrovascular diseases: a bidirectional Mendelian randomization study</b>
DOI: 10.6084/m9.figshare.19248710.v1
title: Assessing causality between bone mineral density with cardio- and cerebrovascular diseases: a bidirectional Mendelian randomization study

description: <b>Assessing causality between </b><b>bone mineral density</b><b> with cardio- and cerebrovascular diseases: a bidirectional Mendelian randomization study</b>
DOI: 10.6084/m9.figshare.19249079
title: Data_ELM_octopus.xlsx

description: Seven octopuses (Octopus vulgaris) were tested in an episodic-like memory task. They first had to learn the replenishing rate (RR) of their preys, in less than 40 trials (first batch, three octopuses) or 80 trials (second batch, four octopuses). One individual (Teddy) suceeded in the task and was subsequently tested in an episodic-like memory task (ELM).<br>
DOI: 10.6084/m9.figshare.19249079.v1
title: Data_ELM_octopus.xlsx

description: Seven octopuses (Octopus vulgaris) were tested in an episodic-like memory task. They first had to learn the replenishing rate (RR) of their preys, in less than 40 trials (first batch, three octopuses) or 80 trials (second batch, four octopuses). One individual (Teddy) suceeded in the task and was subsequently tested in an episodic-like memory task (ELM).<br>
DOI: 10.6084/m9.figshare.19249103
title: Mafft multiple sequence alignment for Type specimen phylogenetic tree

description: Multiple sequence alignment for phylogenetic tree.
DOI: 10.6084/m9.figshare.19249103.v1
title: Mafft multiple sequence alignment for Type specimen phylogenetic tree

description: Multiple sequence alignment for phylogenetic tree.
DOI: 10.5519/qd.20dszjws
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (66 records)
DOI: 10.6084/m9.figshare.19249094
title: DatasetAndCodes

description: The file content includes experimental data and experimental code for validating the GEO_ADPTC clustering package.
DOI: 10.6084/m9.figshare.19249094.v1
title: DatasetAndCodes

description: The file content includes experimental data and experimental code for validating the GEO_ADPTC clustering package.
DOI: 10.5519/qd.fb6ewzkp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (206 records)
DOI: 10.34740/kaggle/dsv/3238980
title: Mahanagar Yatayat Dataset