cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1566821
title: Diversity of Insects within the Grasslands using a Quadrant

description: During this lab, the abundance of species within a quadrant either placed in mowed grass or unmowed grass were observed. This took place in grasslands which is occupied by fairly short grass and also contains many plants and large amounts of evenly grown grass. The objective was to place our quadrants in areas that contained mowed grass and unmowed grass, and upon doing so, an overall count of the number of species contained within this area. After using the quadrant approximate ly six times iin the mowed and unmowed grass, you begin to realize the diversity of species is a lot more abundant in the unmowed grass and this may be due to the approximattity of the plant and animal species to one another as compared to the unmowed grass. The quandrant measures 1m x 1m and they are observed for a period of 3 minutes and after taking the data needed, the quadrant is placed in a location 3 meters away form where it was before.and this is done a total of six times on unmowed grass and mowed grass.
DOI: 10.6084/m9.figshare.1566822
title: Lab 3 - Data set 3 - A Comparison of Insect Diversity in Grassland and Woodlot Areas

description: This study compares the diversity of insects found in grassland and woodlot areas using pan traps. The data was collected by four ecology students on Wednesday, September 30th, 2015, between 2:30 pm and 5:30 pm and was taken from the grassland and woodlot located East of Stong Pond on the South-West of York University. For this study, there were four sets of three coloured bowls; each set contained one yellow bowl, one blue, and one white. Two of the four sets were placed in the grassland and two in the woodlot. Of the two in the grassland, one set was placed at random next to a thorn bush. The other set was placed in a flowered area where each coloured bowl was placed next to the flower of similar colour (yellow bowl with yellow flower, blue bowl with purple flower, and white bowl with white flower). Of the two in the woodlot, one set was placed at random near a pathway clear of many plants and trees, and the other was placed at random in a place with higher tree and plant cover. Each bowl was filled with approximately one centimetre of solution (mix of soap and water) to ensure that any insects that entered the bowl were unable to escape. Each bowl was placed at ground level and was placed at least one metre away from its neighbouring bowl. After three hours, the bowls were revisited and the number and type of insects inside each coloured bowl in each location were recorded. For this study, only the rtus of the insect was recorded (example: fly, ant, cricket, yellow jacket).<br><br>Group Members: Murtuza, Chris, Phaeba
DOI: 10.6084/m9.figshare.1566823.v1
title: Lab 3 insect abundance

description: This expirament took place in the grass lands of York university. There were two specfied reigons that were studied, first being mowed grass that was cut and the second in which the grass wasnt mowed or cut. The expirament was divided into two by the group memebrs some members went around sweeping to capture insects whereas the other counted the insect species in a specfic reigon. The two reigons had 5 trials with the measuring distance of 30 feet with no overplaping of 30 feet reigon. The species of insects or vertabrates found in the reigon were identified by the closet scientific name they related too. All the insects were then retuened back into grasslads.
DOI: 10.6084/m9.figshare.1566819
title: Wahl, Kaplanis, Gordon, and Erlich ASHG poster 2015

description: This poster will be presented on Wednesday, October 7 at 5 pm at the American Society of Human Genetics Conference in Baltimore, MD.
DOI: 10.6084/m9.figshare.1566820
title: Lab 3 Dataset 4 - Bird Species Abundance at York University Danby Woods

description: <strong>Introduction:</strong><br>The objective of this dataset was to gather the species of birds present in the area (for both grassland and woodlot), the distance they were from the transect, and how many of each species were there. The lab was carried out on Wednesday, September 30, 2015. <strong>Materials:</strong><br>The materials we used were two transects, a binocular, paper, and pencil for recording data. <strong>Site:</strong><br>The data was collected at York University’s Danby Woods in both the grassland and the woodlot near the northeastern side of the campus. The climate was a little chilly due to the light wind, but it was sunny too. The Beaufort Scale for that day was around 2-4 with the light breeze. However, it was a little cooler in the woodlands because there was no sun due to the dense canopy of leaves. In the grasslands, most of the tall plants seemed to have been trimmed down compared to the last time we were there. In the woodlands, there were many trees of various ages, but no animals were present at the time because of the change in season. <strong>Method:</strong> The experiment was carried out by us laying out one transect along a path where the trees were, since the birds usually inhabit there. Then, we waited for the birds to fly over or around the transect. If there weren’t any visible birds, we would use the binocular to search for them or listen to their chirps. We repeated this process until we got five recorded data for both the grasslands and the woodlot (five for each). We noticed that there were not many birds that were visible. This could be because of the changing seasons and most of the birds have migrated already. However, there were an abundant amount of starlings in the grasslands and sparrows in the woodlot. <strong>Group Members:</strong> Sajid Alvi, Anisa Amin, James Quach, Iiman Darman
DOI: 10.6084/m9.figshare.1566822.v1
title: Lab 3 - Data set 3 - A Comparison of Insect Diversity in Grassland and Woodlot Areas

description: This study compares the diversity of insects found in grassland and woodlot areas using pan traps. The data was collected by four ecology students on Wednesday, September 30th, 2015, between 2:30 pm and 5:30 pm and was taken from the grassland and woodlot located East of Stong Pond on the South-West of York University. For this study, there were four sets of three coloured bowls; each set contained one yellow bowl, one blue, and one white. Two of the four sets were placed in the grassland and two in the woodlot. Of the two in the grassland, one set was placed at random next to a thorn bush. The other set was placed in a flowered area where each coloured bowl was placed next to the flower of similar colour (yellow bowl with yellow flower, blue bowl with purple flower, and white bowl with white flower). Of the two in the woodlot, one set was placed at random near a pathway clear of many plants and trees, and the other was placed at random in a place with higher tree and plant cover. Each bowl was filled with approximately one centimetre of solution (mix of soap and water) to ensure that any insects that entered the bowl were unable to escape. Each bowl was placed at ground level and was placed at least one metre away from its neighbouring bowl. After three hours, the bowls were revisited and the number and type of insects inside each coloured bowl in each location were recorded. For this study, only the rtus of the insect was recorded (example: fly, ant, cricket, yellow jacket).<br><br>Group Members: Murtuza, Chris, Phaeba
DOI: 10.6084/m9.figshare.1566815
title: Group 3: DATASET 4: Identifying Bird Species Along the Transect

description: The field study was conducted on September 30, 2015 at York University’s Danby Woodlot by four students. The data was collected between 14:30 and 17:30 on both grassland and woodlot. The objective was to identify bird species that flew over at one time. Two students were assigned to conduct the experiment in woodlot and the other two in grassland to save time. First, the transect was placed on the site and one student walked along the transect, stopping three seconds after each step. When the birds were spotted, the distance, in meters, between the bird on the transect and the student on the transect were calculated. In addition, the binoculars (optional) were used to better see the amount of specie and the specie type. Also, a bird book guide was used to help the student determine the exact specie. Finally, the wind speed, scaling from one to four, was measured using Beaufort wind scale. Thus, the data was used to measure the occurrence of the bird species in woodlot and grassland. Group 3 members: Mary H, Shaneil H, Gamsayini K and Prachi M.
DOI: 10.6084/m9.figshare.1566818
title: Mapping B-cell responses to bacterial infection using next generation phage display

description: Scripts for processing of data for publication. Mapping B-cell responses to bacterial infection using next generation phage display. Ibrahim A. Naqid, Ben C. Maddison, Jonathan P. Owen, Anastasios Spiliotopoulos, Richard D. Emes, Andrew Warry, Monika A. Tchórzewska, , Francesca Martelli, Rebecca J. Gosling, Robert H. Davies, Roberto M. La Ragione and Kevin C. Gough School of Veterinary Medicine and Science, The University of Nottingham, Sutton<br>Bonington Campus, College Road, Sutton Bonington, Leicestershire, LE12 5RD. UK.<br>ADAS UK, School of Veterinary Medicine and Science, The University of Nottingham,<br>Sutton Bonington Campus, College Road, Sutton Bonington, Leicestershire, LE12 5RD. UK<br>Advanced Data Analysis Centre, The University of Nottingham, Sutton Bonington Campus<br>Animal and Plant Health Agency, Woodham Lane, New Haw, Addlestone, Surrey. KT15 3NB. UK.<br>School of Biological Science, Royal Holloway, University of London, Egham, Surrey. TW20 0EX.<br>School of Veterinary Medicine, Daphne Jackson Road, University of Surrey, Guildford, Surrey. GU2 7AL Corresponding Author: Dr K. C. Gough, School of Veterinary Medicine and Science, The<br>University of Nottingham, Sutton Bonington Campus, College Road, Sutton Bonington,<br>Leicestershire, LE12 5RD. UK. Telephone: +44-115-9516272; FAX: +44-115-9516440; Email:kevin.gough@nottingham.ac.uk
DOI: 10.6084/m9.figshare.1566819.v1
title: Wahl, Kaplanis, Gordon, and Erlich ASHG poster 2015

description: This poster will be presented on Wednesday, October 7 at 5 pm at the American Society of Human Genetics Conference in Baltimore, MD.
DOI: 10.6084/m9.figshare.1566813
title: Validation of the Pathological Buying Screener

description: Representative German dataset, Pathological Buying Screener, spss
DOI: 10.6084/m9.figshare.1566820.v1
title: Lab 3 Dataset 4 - Bird Species Abundance at York University Danby Woods

description: <strong>Introduction:</strong><br>The objective of this dataset was to gather the species of birds present in the area (for both grassland and woodlot), the distance they were from the transect, and how many of each species were there. The lab was carried out on Wednesday, September 30, 2015. <strong>Materials:</strong><br>The materials we used were two transects, a binocular, paper, and pencil for recording data. <strong>Site:</strong><br>The data was collected at York University’s Danby Woods in both the grassland and the woodlot near the northeastern side of the campus. The climate was a little chilly due to the light wind, but it was sunny too. The Beaufort Scale for that day was around 2-4 with the light breeze. However, it was a little cooler in the woodlands because there was no sun due to the dense canopy of leaves. In the grasslands, most of the tall plants seemed to have been trimmed down compared to the last time we were there. In the woodlands, there were many trees of various ages, but no animals were present at the time because of the change in season. <strong>Method:</strong> The experiment was carried out by us laying out one transect along a path where the trees were, since the birds usually inhabit there. Then, we waited for the birds to fly over or around the transect. If there weren’t any visible birds, we would use the binocular to search for them or listen to their chirps. We repeated this process until we got five recorded data for both the grasslands and the woodlot (five for each). We noticed that there were not many birds that were visible. This could be because of the changing seasons and most of the birds have migrated already. However, there were an abundant amount of starlings in the grasslands and sparrows in the woodlot. <strong>Group Members:</strong> Sajid Alvi, Anisa Amin, James Quach, Iiman Darman
DOI: 10.6084/m9.figshare.1566812
title: Supporting data; sulfur vapour modelling

description: Supporting data for work on thermodynamic equilibrium of sulfur vapours: raw files from density functional theory (DFT) calculations with FHI-aims; structure set from evolutionary search; summary of frequency data by sulfur allotrope and calculation method.
DOI: 10.6084/m9.figshare.1566813.v1
title: Validation of the Pathological Buying Screener

description: Representative German dataset, Pathological Buying Screener, spss
DOI: 10.6084/m9.figshare.1566818.v1
title: Mapping B-cell responses to bacterial infection using next generation phage display

description: Scripts for processing of data for publication. Mapping B-cell responses to bacterial infection using next generation phage display. Ibrahim A. Naqid, Ben C. Maddison, Jonathan P. Owen, Anastasios Spiliotopoulos, Richard D. Emes, Andrew Warry, Monika A. Tchórzewska, , Francesca Martelli, Rebecca J. Gosling, Robert H. Davies, Roberto M. La Ragione and Kevin C. Gough School of Veterinary Medicine and Science, The University of Nottingham, Sutton<br>Bonington Campus, College Road, Sutton Bonington, Leicestershire, LE12 5RD. UK.<br>ADAS UK, School of Veterinary Medicine and Science, The University of Nottingham,<br>Sutton Bonington Campus, College Road, Sutton Bonington, Leicestershire, LE12 5RD. UK<br>Advanced Data Analysis Centre, The University of Nottingham, Sutton Bonington Campus<br>Animal and Plant Health Agency, Woodham Lane, New Haw, Addlestone, Surrey. KT15 3NB. UK.<br>School of Biological Science, Royal Holloway, University of London, Egham, Surrey. TW20 0EX.<br>School of Veterinary Medicine, Daphne Jackson Road, University of Surrey, Guildford, Surrey. GU2 7AL Corresponding Author: Dr K. C. Gough, School of Veterinary Medicine and Science, The<br>University of Nottingham, Sutton Bonington Campus, College Road, Sutton Bonington,<br>Leicestershire, LE12 5RD. UK. Telephone: +44-115-9516272; FAX: +44-115-9516440; Email:kevin.gough@nottingham.ac.uk
DOI: 10.6084/m9.figshare.1566811
title: Summary of calculated frequency data

description: Summary of frequency data from all-electron DFT calculations with FHI-aims. The species are a set of sulfur allotropes; the data is used to form a thermodynamic model of the mixed sulfur vapour phase. Frequencies are given in reciprocal cm. The lowest six frequencies (or five frequencies in the case of S2) are the spurious translational and rotational terms; ideally these are equal to zero. They have been retained in order to give a sense of the convergence level of the calculations. Generated using open-source code (see link).
DOI: 10.6084/m9.figshare.1566812.v1
title: Supporting data; sulfur vapour modelling

description: Supporting data for work on thermodynamic equilibrium of sulfur vapours: raw files from density functional theory (DFT) calculations with FHI-aims; structure set from evolutionary search; summary of frequency data by sulfur allotrope and calculation method.
DOI: 10.6084/m9.figshare.1566810
title: Insect Abundance In a grassland near York University

description: Method: Three group members were involved in collecting the data of insect abundance. A catching net, a measuring tape and a timer were used during the experiment. The measuring tape was placed on the grassland to indicate a transect distance of 5 meters, then a member would walk along that path waving the catching net violently through the grass for exactly one minute and observe for any insects caught in the net after. The insects caught in this experiment mainly consisted of spiders, ants, mosquitoes, beetles and grasshoppers. The experiment was repeated 10 times. Condition: Experiemnt was conducted around 2:30 PM Wednesday September 30th, partly cloudy and the temperature was approximately 20 degrees celsius.
DOI: 10.6084/m9.figshare.1566811.v1
title: Summary of calculated frequency data

description: Summary of frequency data from all-electron DFT calculations with FHI-aims. The species are a set of sulfur allotropes; the data is used to form a thermodynamic model of the mixed sulfur vapour phase. Frequencies are given in reciprocal cm. The lowest six frequencies (or five frequencies in the case of S2) are the spurious translational and rotational terms; ideally these are equal to zero. They have been retained in order to give a sense of the convergence level of the calculations. Generated using open-source code (see link).
DOI: 10.6084/m9.figshare.1566810.v1
title: Insect Abundance In a grassland near York University

description: Method: Three group members were involved in collecting the data of insect abundance. A catching net, a measuring tape and a timer were used during the experiment. The measuring tape was placed on the grassland to indicate a transect distance of 5 meters, then a member would walk along that path waving the catching net violently through the grass for exactly one minute and observe for any insects caught in the net after. The insects caught in this experiment mainly consisted of spiders, ants, mosquitoes, beetles and grasshoppers. The experiment was repeated 10 times. Condition: Experiemnt was conducted around 2:30 PM Wednesday September 30th, partly cloudy and the temperature was approximately 20 degrees celsius.
DOI: 10.6084/m9.figshare.1566815.v1
title: Group 3: DATA SET 4: Identifying Bird Species Along the Transect

description: The field study was conducted on September 30, 2015 at York University’s Danby Woodlot by four students. The data was collected between 14:30 and 17:30 on both grassland and woodlot. The objective was to identify bird species that flew over at one time. Two students were assigned to conduct the experiment in woodlot and the other two in grassland to save time. First, the transect was placed on the site and one student walked along the transect, stopping three seconds after each step. When the birds were spotted, the distance, in meters, between the bird on the transect and the student on the transect were calculated. In addition, the binoculars (optional) were used to better see the amount of specie and the specie type. Also, a bird book guide was used to help the student determine the exact specie. Finally, the wind speed, scaling from one to four, was measured using Beaufort wind scale. Thus, the data was used to measure the occurrence of the bird species in woodlot and grassland. Group 3 members: Mary H, Shaneil H, Gamsayini K and Prachi M.
DOI: 10.6084/m9.figshare.1566807
title: Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically-relevant UK isolates of Staphylococcus aureus

description: Supplementary Table 1 - Aureus Proteins, Supplementary Table 2 - Protein Probability and Supplementary Table 3 - Peptides Peptide as published in <em>Microbial Genomics</em> in the following article: 'Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically-relevant UK isolates of Staphylococcus aureus'
DOI: 10.6084/m9.figshare.1566712
title: A Quantitative and Qualitative Analysis of Various Insect Species and their Interactions

description: Methods: This group consisted of 5 members, who split into two smaller groups to achieve the aims of the investigation in a more efficient manner. Dataset 2, involved the Pitfall trap. At the beginning of the lab, 10 plastic cups were buried in a woodlot, and 10 additional ones in highly disturbed grassland area. The design was decided by the investigators (i.e. disturbance, light, cover, and as blcoked or regression based). Upon completnig the lab, the number of insects captured in each cup were counted, and released. Finally, the number of different recognizable taxonomic units (rtus) per sample as well was calculated (i.e. flies, bees, spiders, etc). Outside Conditions: Outside Conditions: 90% shade cover, shards of sunlight coming through the spaces in the trees' canopy, slight breeze, little to no grass in the analyzed quadrats, dead maple leaves of varying colors, cool (lower than room temperature), occasional encounter of snails on plants, frequent observation of Purple Aster, and Canadian Goldenrod plants, maple leaf saplings varied in size from a bud, to a fully grown plant.
DOI: 10.6084/m9.figshare.1566712.v1
title: A Quantitative and Qualitative Analysis of Various Insect Species and their Interactions

description: Methods: This group consisted of 5 members, who split into two smaller groups to achieve the aims of the investigation in a more efficient manner. Dataset 2, involved the Pitfall trap. At the beginning of the lab, 10 plastic cups were buried in a woodlot, and 10 additional ones in highly disturbed grassland area. The design was decided by the investigators (i.e. disturbance, light, cover, and as blcoked or regression based). Upon completnig the lab, the number of insects captured in each cup were counted, and released. Finally, the number of different recognizable taxonomic units (rtus) per sample as well was calculated (i.e. flies, bees, spiders, etc). Outside Conditions: Outside Conditions: 90% shade cover, shards of sunlight coming through the spaces in the trees' canopy, slight breeze, little to no grass in the analyzed quadrats, dead maple leaves of varying colors, cool (lower than room temperature), occasional encounter of snails on plants, frequent observation of Purple Aster, and Canadian Goldenrod plants, maple leaf saplings varied in size from a bud, to a fully grown plant.
DOI: 10.6084/m9.figshare.1566807.v2
title: Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically-relevant UK isolates of Staphylococcus aureus

description: Supplementary Table 1 - Aureus Proteins, Supplementary Table 2 - Protein Probability and Supplementary Table 3 - Peptides Peptide as published in <em>Microbial Genomics</em> in the following article: 'Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically-relevant UK isolates of Staphylococcus aureus'
DOI: 10.6084/m9.figshare.1566710
title: Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically-relevant UK isolates of Staphylococcus aureus

description: Supplementary Table 4 - Proteins in Database as published in <em>Microbial Genomics</em> in the following article: 'Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically-relevant UK isolates of Staphylococcus aureus' [DOI: 10.1099/mgen.0.000049]
DOI: 10.6084/m9.figshare.1566705
title: A cautionary note on testing latent variable models

description: The dataset relates to a study that tackled the practice of testing latent variable models. The analysis covered recently published studies from 11 psychology journals varying in orientation and impact. Seventy-five studies that matched the criterion of applying some of the latent modeling techniques were reviewed. Results indicate the presence of a general tendency to ignore the model test (χ²) followed by the acceptance of approximate fit hypothesis without detailed model examination yielding relevant empirical evidence. Due to reduced sensitivity of such a procedure to confront theory with data, there is an almost invariable tendency to accept the theoretical model. This absence of model test consequences, manifested in frequently unsubstantiated neglect of evidence speaking against the model, thus implies the perilous question of whether such empirical testing of latent structures (the way it is widely applied) makes sense at all.