cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3604220_d1.v1
title: Additional file 1: of Burden of stroke attributable to selected lifestyle risk factors in rural South Africa

description: CRA methodology as implemented in Excel for Agincourt sub-district, South Africa. (XLSX 643 kb)
DOI: 10.6084/m9.figshare.c.3604280_d1.v1
title: MOESM1 of Effects of salinity on nest-building behaviour in a marine fish

description: Additional file 1. Supporting data.
DOI: 10.6084/m9.figshare.c.3604286_d1.v1
title: Additional file 1: of Excess weight gain during insulin pump therapy is associated with higher basal insulin doses

description: Excel- insulin and weight gain. (XLSX 151Â kb)
DOI: 10.6084/m9.figshare.c.3604295_d1.v1
title: MOESM1 of The introduction of the fungal d-galacturonate pathway enables the consumption of d-galacturonic acid by Saccharomyces cerevisiae

description: Additional file 1. HPLC results of the cultivations in D-galacturonic acid.
DOI: 10.6084/m9.figshare.c.3604310_d1.v1
title: MOESM1 of Development of gut inflammation in mice colonized with mucosa-associated bacteria from patients with ulcerative colitis

description: Additional file 1. The sequences of excised DGGE bands.
DOI: 10.6084/m9.figshare.c.3604349_d2.v1
title: Additional file 5: of Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development

description: Table S1â  S10. (XLSX 1175 kb)
DOI: 10.6084/m9.figshare.c.3604373_d1.v1
title: Additional file 1: Table S1. of Immune response in adverse reactions to metal debris following metal-on-metal total hip arthroplasty

description: Lymphocyte stimulation test and dominant lymphocytes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3604379_d1.v1
title: Additional file 1: of Influence of light-curing distance on degree of conversion and cytotoxicity of etch-and-rinse and self-etch adhesives

description: Data for Statistics Lunghi. Raw data supporting the findings and conclusion of the present study. Raw data for the extracellularly released LDH activity from dental pulp cells and gingival fibroblasts as well as raw data for the DC of conversion in the different groups. (XLSX 41 kb)
DOI: 10.15468/dl.6gvx2n
title: Occurrence Download

description: A dataset containing 232276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncorhynchus mykiss (Walbaum, 1792)"
 ]
}

 The dataset includes 232276 records from 514 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037525-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604451_d2.v1
title: Additional file 2: of Introduction of digital speech recognition in a specialised outpatient department: a case study

description: Raw dataset to calculate “time to letter finalised”. Parameter “time to letter finalised” for each letter that has been sent in 2015 (in days; numeric) and respective month when letter was created (1–12; string). (CSV 16 kb)
DOI: 10.6084/m9.figshare.c.3604496_d3.v1
title: Additional file 3: Table S2. of Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome

description: List of disrupted genes. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3604508_d1.v1
title: Additional file 1: of Maturation toward neuronal tissue in a Ewing sarcoma of bone after chemotherapy

description: The used antibodies. (XLSX 10kb)
DOI: 10.6084/m9.figshare.c.3604496_d6.v1
title: Additional file 8: Table S4. of Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome

description: Primers used in this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3604496_d7.v1
title: Additional file 2: of Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome

description: The nucleotide sequences of 440 isolated LTR retrotransposons analyzed in the study. (FASTA 2783Â kb)
DOI: 10.6084/m9.figshare.c.3604526_d5.v1
title: Additional file 1: Table S1. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

description: List of cultivars included in the analysis with their country of origin, days to heading and release date (a, before 1900; b, 1900–1965; c, 1966–2000; d, after 2000). Membership (&gt;80 %) to K = 4, K = 5 and K = 6 groups defined by STRUCTURE is also indicated. Accessions displaying approximately 50 % of membership to two subpopulations are also indicated. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3604547_d3.v1
title: Additional file 3: Table S3. of Comparative genomic analysis of the compound Brassica napus Rf locus

description: Annotation of the B. napus 600Â kb Rf-region. (XLS 52Â kb)
DOI: 10.6084/m9.figshare.c.3604550_d4.v1
title: Additional file 20: Table S20. of Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

description: Targets of miRNA matched to DEGs. (XLSX 15.6 kb)
DOI: 10.6084/m9.figshare.c.3604547_d4.v1
title: Additional file 1: Table S1. of Comparative genomic analysis of the compound Brassica napus Rf locus

description: Information on molecular markers. (XLS 14Â kb)
DOI: 10.6084/m9.figshare.c.3604550_d5.v1
title: Additional file 15: Table S15. of Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

description: Novel miRNAs of P. tomentosa. (XLS 38.5 kb)
DOI: 10.6084/m9.figshare.c.3604565_d2.v1
title: Additional file 3: of Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping

description: Additional summary tables (cited in manuscript text) for the chracterization of genomic features through hight density linkage mapping. (XLSX 983 kb)
DOI: 10.6084/m9.figshare.c.3604550_d7.v1
title: Additional file 16: Table S16. of Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

description: Identified targets of miRNA involved in Paulownia by miRNA and degradome analysis. (XLSX 35.2 kb)
DOI: 10.6084/m9.figshare.c.3604586_d2.v1
title: Additional file 3: Table S3. of The effect of maternal undernutrition on the rat placental transcriptome: protein restriction up-regulates cholesterol transport

description: Full transcriptome analysis. RNASeq data set, unedited. (XLS 6400 kb)
DOI: 10.6084/m9.figshare.c.3604550_d14.v1
title: Additional file 18: Table S18. of Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

description: GO analysis of the P. tomentosa DEGs. (XLSX 57.7 kb)
DOI: 10.6084/m9.figshare.c.3604577_d8.v1
title: Additional file 14: Table S7. of Phosphoproteome dynamics mediate revival of bacterial spores

description: Dynamics of the germinating spore proteome. Changes in protein level between 0 to 10- and 30-minute time points. (XLSX 147 kb)
DOI: 10.6084/m9.figshare.c.3604631_d2.v1
title: Additional file 2: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: The list of organisms supported by GeneSCF for Gene ontology functional database. (XLS 9 kb)
DOI: 10.6084/m9.figshare.c.3604646_d1.v1
title: MOESM2 of Characterization of sugarcane (Saccharum spp.) leaf senescence: implications for biofuel production

description: Additional file 2. Analysis of variance (ANOVA) of the (A) SPAD index, (B) macronutrients, (C) micronutrients, and (D) neutral monosaccharides. The significant data were highlighted in red.
DOI: 10.6084/m9.figshare.c.3604640_d2.v1
title: MOESM3 of Knowledge, attitudes and perceptions of occupational hazards and safety practices in Nigerian healthcare workers

description: Additional file 3. Summation of composite knowledge, attitude and perception ratings.
DOI: 10.6084/m9.figshare.c.3604628_d3.v1
title: Additional file 2: Table S1. of Coevolution of female and male genital components to avoid genital size mismatches in sexually dimorphic spiders

description: Phylogenetic correlation results from PDAP for all pairs of parameters. Abbreviations: FTPL: Female Tibia-Patella Length. FCL: Female Carapace Length.sq_RA: square-root Reproductive Area. sq_EA: square-root Epigynal Area. DBO: distance between copulatory openings. open_W: copulatory opening Width. duct_L: reproductive duct Length. cube_SV: cube-root Spermatheca Volume. MBL: Male Body Length. MTPL: Male Tibia-Patella Length. MCW: Male Carapace Width. MCL: Male Carapace Length. ECL: Embolic Conductor Length. cube_BV: cube-root pedipal Bulb Volume. cube_PV: cube-root pedipalp Volume. EW: Embolus Width. cube_EV: cube-root embolus Volume. SSD_BL: FBL/MBL. SSD_TPL: FTPL/MTPL. SSD_CW: FCW/MCW. SSD_CL: FCL/MCL. SGD_SB: Spermatheca volume/Pedipalp Bulb volume. SGD_SP: Spermatheca volume/Pedipalp volume. SGD_EB: Epigynal area/Pedipalp Bulb volume. SGD_EP: Epigynal area/Pedipalp volume. SGD_RB: Reproductive Area/Pedipalp Bulb volume. SGD_RP: Reproductive Area/Pedipalp volume. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3604631_d3.v1
title: Additional file 11: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Enrichment analysis results for list-B genes from GeneSCF and DAVID 6.7 using KEGG as a reference database. (XLS 112 kb)
DOI: 10.6084/m9.figshare.c.3604649_d2.v1
title: Additional file 2: Figure S1. of Decreased neuroinflammation correlates to higher vagus nerve activity fluctuations in near-term ovine fetuses: a case for the afferent cholinergic anti-inflammatory pathway?

description: C-Fos in fetal sheep brain. A. Western blot establishing the specificity of this antibody in near-term fetal sheep brainstem, cerebellum and cortex. B. Western blot: raw data of the image shown in Fig. S1A. C. c-Fos immunohistochemistry (IHC) in near-term fetal sheep and guinea pig brainstems. Top left: positive control staining. The cervical vagus nerve trunks were stimulated bilaterally (the stimulation was applied proximal to the bilateral cervical vagatomy to ensure strictly afferent signaling). Note diffuse c-Fos signal with high levels of background stain. Top right: negative control staining. Similar procedure was performed as in afferent stimulation, except the stimulation was performed distal of the vagatomy site ensuring strictly efferent signaling. Bottom left: example of a UCO group fetal sheep staining. Bottom right: Here we demonstrate the IHC approach regarding secondary antibody and visualization techniques; as primary antibody we used MBP (details in Methods). (ZIP 85110 kb)
DOI: 10.6084/m9.figshare.c.3604631_d4.v1
title: Additional file 10: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Enrichment analysis results for list-A genes from GeneSCF, DAVID and Gorilla using Gene Ontology, Biological Process (GO_BP) as a reference database. (XLS 1589 kb)
DOI: 10.6084/m9.figshare.c.3604631_d5.v1
title: Additional file 7: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Pathway enrichment results from GeneSCF for p53 bound genes at 12Â h (Case study 2) predicted by GeneSCF using KEGG as a reference database. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3604628_d5.v1
title: Additional file 3: Matrix S1. of Coevolution of female and male genital components to avoid genital size mismatches in sexually dimorphic spiders

description: A nexus file containing raw data, phylogenetic trees, and PDAP analyses. (TXT 81 kb)
DOI: 10.6084/m9.figshare.c.3604631_d6.v1
title: Additional file 9: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Functional enrichment results from GeneSCF for p53 bound genes at 12Â h (Case study 2) predicted by GeneSCF using Gene ontology, Molecular Function (GO_MF) as a reference database. (XLS 97 kb)
DOI: 10.6084/m9.figshare.c.3604646_d3.v1
title: MOESM3 of Characterization of sugarcane (Saccharum spp.) leaf senescence: implications for biofuel production

description: Additional file 3. Correlation matrix between macronutrients, micronutrients, SPAD index, and neutral monosaccharides into in-leaf senescence gradient. (A) base, (B) middle, and (C) tip portions of the leaf blade. Significant correlation data (Pearson’s correlation matrix) were highlighted in red (p value ≤0.05).
DOI: 10.6084/m9.figshare.c.3604631_d7.v1
title: Additional file 5: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Pathway enrichment results from GeneSCF for CLL associated differentially expressed genes (Case study 1) predicted using KEGG as reference database. (XLS 230 kb)
DOI: 10.6084/m9.figshare.c.3604631_d13.v1
title: Additional file 8: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Functional enrichment results from GeneSCF for p53 bound genes at 0Â h (Case study 2) predicted by GeneSCF using Gene ontology, Molecular Function (GO_MF) as a reference database. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3604679_d2.v1
title: Additional file 16: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Maximum likelihood phylogenetic tree of WRKY transcription factors in fusion with NLRs in all plants together with all other Arabidopsis WRKY proteins. (TXT 4 kb)
DOI: 10.6084/m9.figshare.c.3604682_d2.v1
title: Additional file 1: of Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies

description: Table of phages and large terminase proteins used in Phamerator database. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3604679_d3.v1
title: Additional file 7: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Amino acid FASTA sequences of putative NLR-IDs. Unix-encoded plain text file with FASTA sequences for all NLR-fusion proteins from Additional file 6. (TXT 917 kb)
DOI: 10.6084/m9.figshare.c.3604676_d3.v1
title: Additional file 3: of Estimating the future burden of cardiovascular disease and the value of lipid and blood pressure control therapies in China

description: Future burden of CVD in China Additional Data. (ACCDB 17064 kb)
DOI: 10.6084/m9.figshare.c.3604682_d3.v1
title: Additional file 3: of Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies

description: Pham table and cluster table generated by Phamerator. (XLSX 774Â kb)
DOI: 10.6084/m9.figshare.c.3604655_d8.v1
title: Additional file 1: Table S1. of Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)

description: Specimen numbers for analyses by view and phylogenetic affiliation. (XLSX 482Â kb)
DOI: 10.6084/m9.figshare.c.3604679_d4.v1
title: Additional file 10: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: B. rapa fusion validation by RNA-seq. Summary of manual validation of B. rapa NLR-IDs using RNA-seq data. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3604679_d6.v1
title: Additional file 4: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Protein ids and corresponding domains of putative NLRs from all plant species. A table of domain architectures detected in all NB-ARC-containing proteins. (XLSX 953 kb)
DOI: 10.6084/m9.figshare.c.3604709_d1.v1
title: Additional file 2: Table S2. of Temporo-spatial cell-cycle kinetics in HeLa cells irradiated by Ir-192 high dose-rate remote afterloading system (HDR-RALS)

description: Datasets for Fig.Â 7. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3604715_d1.v1
title: MOESM3 of Associations between hepcidin and immune response in individuals with hyperbilirubinaemia and severe malaria due to Plasmodium vivax infection

description: Additional file 3. Correlation parameters between the immune biomarkers and laboratory measures, hepcidin and parasitaemia in the study groups.
DOI: 10.6084/m9.figshare.c.3604709_d3.v1
title: Additional file 3: Table S3. of Temporo-spatial cell-cycle kinetics in HeLa cells irradiated by Ir-192 high dose-rate remote afterloading system (HDR-RALS)

description: Datasets for Fig.Â 8. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3604679_d7.v1
title: Additional file 5: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Amino acid FASTA sequences of all putative NLRs. Unix-encoded plain text file with FASTA sequences for all NB-ARC-containing proteins from Additional file 4. (TXT 14163 kb)
DOI: 10.6084/m9.figshare.c.3604679_d14.v1
title: Additional file 12: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: T. aestivum fusion validation by RNA-seq. Summary of manual validation of T. aestivum NLR-IDs using RNA-seq data. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3604724_d5.v1
title: Additional file 2: of Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

description: GO term enrichment for expression-based clusters in rapamycin-treated yeast. (XLSX 161 kb)
DOI: 10.6084/m9.figshare.c.3604679_d15.v1
title: Additional file 3: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Summary of the integrated domains and their prevalence. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3604679_d16.v1
title: Additional file 6: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Protein ids and corresponding domains of putative NLR-IDs from all plant species. Table of domain architectures detected in each protein classified as NLR-fusion. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.c.3604766_d2.v1
title: Additional file 3: of A haplotype-based normalization technique for the analysis and detection of allele specific expression

description: Table S2 detailing the numbers of covered sites and ASE events within RNA sequencing data from 93 individuals. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.c.3604805_d1.v1
title: Additional file 1: of An assessment study of CVD related risk factors in a tribal population of India

description: Survey of CVD Related Risk Factors. (CSV 15 kb)
DOI: 10.15468/dl.8nbnf2
title: Occurrence Download

description: A dataset containing 18228 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode(500, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 100)) AS eeaCellCode, speciesKey, species, establishmentMeans, degreeOfEstablishment, pathway, COUNT(*) AS occurrences,COUNT(DISTINCT recordedBy) AS distinctObservers FROM occurrence WHERE (GBIF_Within('POLYGON((4.09112 50.16859,4.0876 49.91784,4.74607 49.91252,4.74919 50.17058,4.09112 50.16859))', decimalLatitude, decimalLongitude) = True) AND occurrenceStatus = 'PRESENT' AND hasCoordinate = TRUE AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS (issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND "year" IS NOT NULL AND "year" &gt;= 2000 AND orderKey = 729 GROUP BY "year", eeaCellCode, speciesKey, species, establishmentMeans, degreeOfEstablishment, pathway ORDER BY "year" DESC, eeaCellCode ASC, speciesKey ASC

 The dataset's 18228 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037524-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604820_d2.v1
title: MOESM4 of A cancer cell-line titration series for evaluating somatic classification

description: Additional file 4: Table S2. This supplemental Excel document contains the validation results for several combinations of aligner, read processing and somatic caller, which were applied to each sample in the cell-line titration series.
DOI: 10.6084/m9.figshare.c.3604820_d3.v1
title: MOESM2 of A cancer cell-line titration series for evaluating somatic classification

description: Additional file 2. This VCF file lists the chromosome, position, reference and alternative bases for the 193 SNVs and 17 indels that were verified as being true somatic calls. The INFO column contains the variant read frequency observed in the verification sequencing.
DOI: 10.15468/dl.94jjvj
title: Occurrence Download

description: A dataset containing 115195 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Marine invertebrate collection NTNU University Museum"
 ]
}

 The dataset includes 115195 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037526-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604841_d2.v1
title: Additional file 2: of Stochastic epigenetic outliers can define field defects in cancer

description: GSEA result tables of hypervariable DVCs, as identified using iEVORA, in the normal breast study comparing normal breast from healthy women to normal breast adjacent to breast cancer. There are 4 tables, corresponding to hypervariable DVCs mapping to TSS1500, TSS200 or 1st Exon regions, and which are hypermethylated (dvUPdmUP) or hypomethylated (dvUPdmDN) in normal-adjacent tissue, as well as hypervariable DVCs mapping to gene-body or 5â ˛UTR regions, which are hypermethylated (dvUPdmUP-GB) or hypomethylated (dvUPdmDN-GB) in normal-adjacent tissue. In each case, the columns label the number of genes in the MSigDB database list (nList), the number present prior to iEVORA analysis (nRep), the corresponding fraction (fRep), the number of genes overlapping with the iEVORA selected list (nOVLAP), the corresponding odds ratio (OR) and one-tailed Fisher test P-value (P-value), the adjusted P-value using Benjamini-Hochberg correction, and the gene symbols of the genes present in the overlap. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3604856_d1.v1
title: Additional file 1: of Still mesoendemic onchocerciasis in two Cameroonian community-directed treatment with ivermectin projects despite more than 15 years of mass treatment

description: Datasets of Bafia and Yabassi health districts supporting this study. (XLSX 114 kb)
DOI: 10.6084/m9.figshare.c.3604853_d6.v1
title: Additional file 8: of Genomic consequences of selection and genome-wide association mapping in soybean

description: The descriptive summary of GWAS for 9 agronomic traits in soybean. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3604901_d5.v1
title: Additional file 3: Table S3. of Evidence for common horizontal transmission of Wolbachia among butterflies and moths

description: Incomplete MLST strains of Wolbachia in Lepidoptera (accessed March 2014, at http://pubmlst.org/Wolbachia/ ). (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3604955_d7.v1
title: Additional file 2: of Evolution of long centromeres in fire ants

description: Tandem repeat monomers identified from the S. geminata genome. (TXT 1513Â kb)
DOI: 10.6084/m9.figshare.c.3604958_d4.v1
title: Additional file 2: of Intestinal microbial communities associated with acute enteric infections and disease recovery

description: The richness and diversity estimates for intestinal communities from patients with enteric infections. (XLSX 46Â kb)