cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5726566
title: Additional file 4: Table S3. of Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment

description: PCA loadings for human TAMs. Loadings of the 237 genes used in the PCA of Fig.Â 3a. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5726566.v1
title: Additional file 4: Table S3. of Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment

description: PCA loadings for human TAMs. Loadings of the 237 genes used in the PCA of Fig.Â 3a. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5726548
title: Additional file 3: Table S2. of Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment

description: Markers of ontogeny in murine TAMs, compared to human macrophages. Genes differentially expressed between blood-derived TAMs and microglial TAMs in mouse (column A), their homologues in human (column B), and their intersection with genes expressed by human macrophages/microglia in nonmalignant (column C) and malignant (column D) tissue. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.5726548.v1
title: Additional file 3: Table S2. of Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment

description: Markers of ontogeny in murine TAMs, compared to human macrophages. Genes differentially expressed between blood-derived TAMs and microglial TAMs in mouse (column A), their homologues in human (column B), and their intersection with genes expressed by human macrophages/microglia in nonmalignant (column C) and malignant (column D) tissue. (XLSX 34 kb)
DOI: 10.25540/wr5v-hvew
title: National Environment Agency Climatological Data - 5-minute intervals rainfall data from Oct-Dec 2016

description: 5-minute intervals rainfall data from Oct-Dec 2016
description: You may use the data for any studies but please attribute the source data as "Meteorological Service Singapore".
DOI: 10.6084/m9.figshare.5726512
title: Additional file 1: Table S1. of Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment

description: Sample overview. Relevant clinical information and histologic assessment of samples included in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5726512.v1
title: Additional file 1: Table S1. of Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment

description: Sample overview. Relevant clinical information and histologic assessment of samples included in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5726506
title: Additional file 4: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Number of reviews, eligible samples, cohorts, and associations for potential socio-cultural determinants of physical activity. Summarizes the number of reviews, eligible samples, and cohorts assessing a specific potential socio-cultural determinant of physical activity (PA) as well as the number of positive, negative, null, or inconclusive associations as extracted from the 23 included reviews. The evaluation of the importance of a potential determinant and the strength of the evidence [24, 25] were based on these results. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5726506.v1
title: Additional file 4: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Number of reviews, eligible samples, cohorts, and associations for potential socio-cultural determinants of physical activity. Summarizes the number of reviews, eligible samples, and cohorts assessing a specific potential socio-cultural determinant of physical activity (PA) as well as the number of positive, negative, null, or inconclusive associations as extracted from the 23 included reviews. The evaluation of the importance of a potential determinant and the strength of the evidence [24, 25] were based on these results. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5726500
title: MOESM4 of Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone

description: Additional file 4: Table S3. Raw read data. Raw read lengths and GC contents for all libraries.
DOI: 10.6084/m9.figshare.5726500.v1
title: MOESM4 of Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone

description: Additional file 4: Table S3. Raw read data. Raw read lengths and GC contents for all libraries.
DOI: 10.6084/m9.figshare.5726485
title: Additional file 3: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Categorization of extracted potential socio-cultural determinants. Summarizes the potential socio-cultural determinants of physical activity (PA) as extracted from the 23 included reviews and as categorized for this umbrella systematic literature review. References indicate the reviews from where the potential socio-cultural determinants were extracted for youths and adults. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5726485.v1
title: Additional file 3: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Categorization of extracted potential socio-cultural determinants. Summarizes the potential socio-cultural determinants of physical activity (PA) as extracted from the 23 included reviews and as categorized for this umbrella systematic literature review. References indicate the reviews from where the potential socio-cultural determinants were extracted for youths and adults. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.5726461
title: Additional file 2: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Quality assessment of included systematic literature reviews using the AMSTAR checklist assessing eleven quality criteria. Summarizes the results of the methodological quality assessment of included systematic literature reviews based on a slightly modified version of the AMSTAR checklist [22, 23]. Criterion number 11 originally requires the conflict of interest statement in the SLR as well as in the primary studies; for this umbrella SLR the criterion was fulfilled, if the statement was provided in the SLR. *Criteria 1â 11 were scored 0, when the criteria was not fulfilled, not applicable, or could not be answered based on the information provided by the systematic literature review, and 1, when the criteria was applicable for and fulfilled by the included systematic literature review. Sum quality score ranged from 0 to 11. **weak (sum quality score ranging from 0 to 3); moderate (sum quality score ranging from 4 to 7); strong (sum quality score ranging from 8 to 11). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5726461.v1
title: Additional file 2: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Quality assessment of included systematic literature reviews using the AMSTAR checklist assessing eleven quality criteria. Summarizes the results of the methodological quality assessment of included systematic literature reviews based on a slightly modified version of the AMSTAR checklist [22, 23]. Criterion number 11 originally requires the conflict of interest statement in the SLR as well as in the primary studies; for this umbrella SLR the criterion was fulfilled, if the statement was provided in the SLR. *Criteria 1â 11 were scored 0, when the criteria was not fulfilled, not applicable, or could not be answered based on the information provided by the systematic literature review, and 1, when the criteria was applicable for and fulfilled by the included systematic literature review. Sum quality score ranged from 0 to 11. **weak (sum quality score ranging from 0 to 3); moderate (sum quality score ranging from 4 to 7); strong (sum quality score ranging from 8 to 11). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5726440
title: Additional file 1: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Search strategy and key words used for the literature research. Summarizes the search strategy applied in the MEDLINE, Web of Science, Scopus, and SPORTDiscus databases. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5726440.v1
title: Additional file 1: of Socio-cultural determinants of physical activity across the life course: a â Determinants of Diet and Physical Activityâ (DEDIPAC) umbrella systematic literature review

description: Search strategy and key words used for the literature research. Summarizes the search strategy applied in the MEDLINE, Web of Science, Scopus, and SPORTDiscus databases. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5726431
title: Additional file 5: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: Neutrality tests. Tables over the resulting test values from the neutrality tests. (A) Tajima’s D. (B) Fu and Li’s D and D*. (C) Fu and Li’s F and F*. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5726431.v1
title: Additional file 5: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: Neutrality tests. Tables over the resulting test values from the neutrality tests. (A) Tajima’s D. (B) Fu and Li’s D and D*. (C) Fu and Li’s F and F*. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5726416
title: Additional file 4: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: Nucleotide diversity and Theta W Tables. A) Nucleotide diversity (Ď ). B) Theta W. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5726416.v1
title: Additional file 4: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: Nucleotide diversity and Theta W Tables. A) Nucleotide diversity (Ď ). B) Theta W. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.5726392
title: Additional file 2: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: List of PCR amplified fragments. Primer sequences and PCR conditions. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5726392.v1
title: Additional file 2: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: List of PCR amplified fragments. Primer sequences and PCR conditions. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5726377
title: Additional file 1: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: List of wheat accessions and their sites of origin. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5726377.v1
title: Additional file 1: of Evolutionary history of the NAM-B1 gene in wild and domesticated tetraploid wheat

description: List of wheat accessions and their sites of origin. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.5726311
title: Additional file 1: of Assessment of a bedside test for N-terminal pro B-type natriuretic peptide (NT-proBNP) to differentiate cardiac from non-cardiac causes of pleural effusion in cats

description: The table contains all information of the cats described and analyzed in this study (Signalement, Physical examination findings, Echocardiographic measurements, Diagnosis, Classification and NT-pro BNP values). (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5726311.v1
title: Additional file 1: of Assessment of a bedside test for N-terminal pro B-type natriuretic peptide (NT-proBNP) to differentiate cardiac from non-cardiac causes of pleural effusion in cats

description: The table contains all information of the cats described and analyzed in this study (Signalement, Physical examination findings, Echocardiographic measurements, Diagnosis, Classification and NT-pro BNP values). (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5726296
title: Additional file 6: Table S4. of Quinones are growth factors for the human gut microbiota

description: Quinone-dependent and control strains have predicted anaerobic reductases. The genomes of nearest type strains of all E. coli- or quinone-induced cultured bacteria were surveyed manually for the presence of individual annotated anaerobic reductases using a published dataset [35]. All analyzed organisms have the genetic capability to utilize anaerobic reductases for anaerobic respiration. Arx = Arsenate reductase; Cyd = Cytochrome bd reductase; Dms = Dimethyl sulfoxide reductase; Dsr = Sulfite reductase; Frd = Fumarate reductase; Nap = Nitrate reductase; Nar = Nitrate reductase; Nrf = Nitrite reductase; Phs = Thiosulfate reductase; Psr = Polysulfite reductase; Tor = Trimethylamine N-oxide reductase; Ttr = Tetrathionate reductase; Ynf = Selenate reductase. Data was taken and modified from Racheev, 2014 [35] and Ravcheev, 2016 [24]. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.5726296.v1
title: Additional file 6: Table S4. of Quinones are growth factors for the human gut microbiota

description: Quinone-dependent and control strains have predicted anaerobic reductases. The genomes of nearest type strains of all E. coli- or quinone-induced cultured bacteria were surveyed manually for the presence of individual annotated anaerobic reductases using a published dataset [35]. All analyzed organisms have the genetic capability to utilize anaerobic reductases for anaerobic respiration. Arx = Arsenate reductase; Cyd = Cytochrome bd reductase; Dms = Dimethyl sulfoxide reductase; Dsr = Sulfite reductase; Frd = Fumarate reductase; Nap = Nitrate reductase; Nar = Nitrate reductase; Nrf = Nitrite reductase; Phs = Thiosulfate reductase; Psr = Polysulfite reductase; Tor = Trimethylamine N-oxide reductase; Ttr = Tetrathionate reductase; Ynf = Selenate reductase. Data was taken and modified from Racheev, 2014 [35] and Ravcheev, 2016 [24]. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.5726272
title: Additional file 3: of Isoprenoids responsible for protein prenylation modulate the biological effects of statins on pancreatic cancer cells

description: Table S3. Gene set enrichment analysis on KEGG pathways affected by simvastatin, FPP, or GGPP treatment of MiaPaCa-2 human pancreatic cancer cells. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5726272.v1
title: Additional file 3: of Isoprenoids responsible for protein prenylation modulate the biological effects of statins on pancreatic cancer cells

description: Table S3. Gene set enrichment analysis on KEGG pathways affected by simvastatin, FPP, or GGPP treatment of MiaPaCa-2 human pancreatic cancer cells. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5726269
title: Additional file 5: Table S3. of Quinones are growth factors for the human gut microbiota

description: Quinone-induced bacteria have a disrupted menaquinone biosynthesis pathway, while related organisms not induced by quinones have a complete pathway. The genomes of the nearest type strains of all E. coli- or quinone-induced cultured bacteria were surveyed manually for the presence of a functional menaquinone biosynthesis pathway using a published dataset [24]. All organisms induced by E. coli or quinones in earlier co-culture experiments were missing large components of the menaquinone biosynthesis pathway, while Bacteroides species not induced by E. coli or quinones were predicted to have complete menaquinone biosynthetic capabilities. No strains were found to have predicted copies of genes in the futalosine pathway, an alternative means to generate menaquinone. ubiE/menG: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; menF = Menaquinone-specific isochorismate synthase; menD = 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase; menH = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; menY = 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate dehydrogenase; menC = o-succinylbenzoate synthase; menE = o-succinylbenzoic acid--CoA ligase; menB = Naphthoate synthase. menI = 1,4-dihydroxy-2-naphthoyl-CoA hydrolase; menJ = 1,4-dihydroxy-2-naphthoyl-CoA hydrolasein (putative); menA = 1,4-dihydroxy-2-naphthoate polyprenyltransferase; mqnA = Chorismate dehydratase; mqnE = Aminodeoxyfutalosine synthase; mqnC = Cyclic dehypoxanthine futalosine synthase; mqnD = 1,4-dihydroxy-6-naphthoate synthase; mqnZ = 1,4-dihydroxy-6-naphthoate synthase (alternative); mqnX = Aminodeoxyfutalosine deaminase; mqnB = Futalosine hydrolase (EC 3.2.2.26); mtnN = Aminodeoxyfutalosine nucleosidase; mqnL = 1,4-dihydroxy-6-naphthoate carboxy-lyase, UbiD-like; mqnM = 2-heptaprenyl-1,4-naphthoquinone methyltransferase; mqnP = 1,4-naphthoquinone polyprenyltransferase. Data was taken and modified from Racheev, 2016. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5726269.v1
title: Additional file 5: Table S3. of Quinones are growth factors for the human gut microbiota

description: Quinone-induced bacteria have a disrupted menaquinone biosynthesis pathway, while related organisms not induced by quinones have a complete pathway. The genomes of the nearest type strains of all E. coli- or quinone-induced cultured bacteria were surveyed manually for the presence of a functional menaquinone biosynthesis pathway using a published dataset [24]. All organisms induced by E. coli or quinones in earlier co-culture experiments were missing large components of the menaquinone biosynthesis pathway, while Bacteroides species not induced by E. coli or quinones were predicted to have complete menaquinone biosynthetic capabilities. No strains were found to have predicted copies of genes in the futalosine pathway, an alternative means to generate menaquinone. ubiE/menG: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; menF = Menaquinone-specific isochorismate synthase; menD = 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase; menH = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; menY = 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate dehydrogenase; menC = o-succinylbenzoate synthase; menE = o-succinylbenzoic acid--CoA ligase; menB = Naphthoate synthase. menI = 1,4-dihydroxy-2-naphthoyl-CoA hydrolase; menJ = 1,4-dihydroxy-2-naphthoyl-CoA hydrolasein (putative); menA = 1,4-dihydroxy-2-naphthoate polyprenyltransferase; mqnA = Chorismate dehydratase; mqnE = Aminodeoxyfutalosine synthase; mqnC = Cyclic dehypoxanthine futalosine synthase; mqnD = 1,4-dihydroxy-6-naphthoate synthase; mqnZ = 1,4-dihydroxy-6-naphthoate synthase (alternative); mqnX = Aminodeoxyfutalosine deaminase; mqnB = Futalosine hydrolase (EC 3.2.2.26); mtnN = Aminodeoxyfutalosine nucleosidase; mqnL = 1,4-dihydroxy-6-naphthoate carboxy-lyase, UbiD-like; mqnM = 2-heptaprenyl-1,4-naphthoquinone methyltransferase; mqnP = 1,4-naphthoquinone polyprenyltransferase. Data was taken and modified from Racheev, 2016. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5726251
title: Additional file 2: of Isoprenoids responsible for protein prenylation modulate the biological effects of statins on pancreatic cancer cells

description: Table S2. Differentially expressed genes after simvastatin, FPP, or GGPP treatment of MiaPaCa-2 human pancreatic cancer cells. (XLS 1507 kb)
DOI: 10.6084/m9.figshare.5726251.v1
title: Additional file 2: of Isoprenoids responsible for protein prenylation modulate the biological effects of statins on pancreatic cancer cells

description: Table S2. Differentially expressed genes after simvastatin, FPP, or GGPP treatment of MiaPaCa-2 human pancreatic cancer cells. (XLS 1507 kb)
DOI: 10.6084/m9.figshare.5726221
title: Additional file 2: Table S2. of Quinones are growth factors for the human gut microbiota

description: Strains identified in the E. coli knockout screen unable to induce the growth of KLE1255. Includes information on which genes are absent for each clone. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5726221.v1
title: Additional file 2: Table S2. of Quinones are growth factors for the human gut microbiota

description: Strains identified in the E. coli knockout screen unable to induce the growth of KLE1255. Includes information on which genes are absent for each clone. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5726206
title: Additional file 1: Table S1. of Quinones are growth factors for the human gut microbiota

description: Entire chromosome E. coli deletion library reformatted. 283 strains were first compiled from E. coli small-, medium-, and large-scale deletion libraries to cover all non-essential genes of the E. coli genome. Strains were taken from the Keio collection [19] and two larger deletion libraries [20, 21]. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5726206.v1
title: Additional file 1: Table S1. of Quinones are growth factors for the human gut microbiota

description: Entire chromosome E. coli deletion library reformatted. 283 strains were first compiled from E. coli small-, medium-, and large-scale deletion libraries to cover all non-essential genes of the E. coli genome. Strains were taken from the Keio collection [19] and two larger deletion libraries [20, 21]. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5726191
title: Additional file 3: Table S5. of The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex

description: Sequence based reagents. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.5726191.v1
title: Additional file 3: Table S5. of The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex

description: Sequence based reagents. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.5726164
title: Additional file 2: Table S1. of The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex

description: Baseline characteristics of patient 78. Table S2. List of patients ordered on the basis of circPVT1 expression detected by RT-qPCR, and TP53 status. Table S3. Results of univariate linear regression analysis with clinical variables in tumoral samples. Table S4. Correlation analysis of circPVT1 and p53-associated miRNAs in HNSCC. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.5726164.v1
title: Additional file 2: Table S1. of The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex

description: Baseline characteristics of patient 78. Table S2. List of patients ordered on the basis of circPVT1 expression detected by RT-qPCR, and TP53 status. Table S3. Results of univariate linear regression analysis with clinical variables in tumoral samples. Table S4. Correlation analysis of circPVT1 and p53-associated miRNAs in HNSCC. (XLSX 58Â kb)
DOI: 10.6084/m9.figshare.5726149
title: Additional file 2: of Mandibulate convergence in an armoured Cambrian stem chelicerate

description: Dataset file containing morphological data and code for phylogenetic analysis in MrBayes (Fig. 5), and segment data used for the variability graphs (Fig. 6). (TXT 44 kb)
DOI: 10.6084/m9.figshare.5726149.v1
title: Additional file 2: of Mandibulate convergence in an armoured Cambrian stem chelicerate

description: Dataset file containing morphological data and code for phylogenetic analysis in MrBayes (Fig. 5), and segment data used for the variability graphs (Fig. 6). (TXT 44 kb)