cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15485/1909710
title: Trace Metal Uptake and Mercury Methylation by Sediments from a Stream in Tennessee

description: The formation and transport of methylmercury (MeHg), a neurotoxin, in aquatic environments is a global concern for human health as MeHg can bioaccumulate and biomagnify to high concentrations in aquatic food webs. MeHg is formed by conversion from inorganic mercury through microbial mediated methylation. Sulfate-reducing bacteria have been identified as the primary organisms responsible for MeHg production. Pure-culture studies suggest that low availability of cobalt and copper may inhibit mercury methylation, but whether such limitations occur in the environment is unclear. To explore the possible interaction between trace metal availability and mercury methylation, sediments from the East Fork Poplar Creek in Oak Ridge, Tennessee were sampled and then incubated in the presence and absence of added dissolved cobalt and copper. Three types of data are provided in this package. The first reports the uptake of dissolved cobalt and copper by these stream sediments on short time scales (24 hours) in the form of final dissolved and adsorbed concentrations. The second data component consists of a time series of dissolved concentrations and pH values for stream sediments incubated with artificial stream water containing different addition levels of dissolved cobalt or copper. The dissolved concentrations reported include total iron, manganese, sulfur, phosphorus, nickel, zinc and cobalt, dissolved concentrations of sulfate and orthophosphate, and the amount of cobalt or copper adsorbed by the sediment. The third data component reports data at 0 and 72 hours of incubation time for stream sediments to which cobalt was added. These data include concentrations of methylmercury with isotope labeling to enable determination of methylation and demethylation rates as well as dissolved concentrations of sulfate, phosphate, chloride, iron, cobalt, and organic carbon. All data are provided in text-based CSV format with header sections indicating the data contained in each file and the corresponding units. Note that "u" is used in place of Greek lower-case mu to indicate the micro prefix on units. A Table of Contents file (Data_package_TableofContents.txt) provides an index for the data contained in the individual files.
DOI: 10.15485/1910300
title: Bulk density, grain size, carbon content and isotopes, and nitrogen content of floodplain sediment along the Koyukuk River, Alaska collected in Summer 2018.

description: The dataset is comprised of grain size, bulk density, carbon and nitrogen content, stable carbon isotopes, and radiocarbon content of soils sampled on the floodplain of the Koyukuk River near Huslia, AK. This dataset was collected to characterize sediment properties and floodplain organic carbon stocks in the discontinuous permafrost floodplain of the Koyukuk River. The data help quantify the flux and storage of sediment and carbon between the Koyukuk River and the surrounding floodplain as the river migrates laterally. The samples were collected in June 27 - July 9, 2018. The soil samples come from a total of 24 locations and were sampled in the upper 490 cm of the river cutbanks, point bars, and floodplain. Samples were analyzed for bulk density, full particle size distribution, nitrogen content and carbon content and isotopes, though not all samples were included in each analysis. An additional 10 samples of floodplain woody debris were measured for radiocarbon content. Data, detailed methods, analyses, and interpretations were previously published at: Douglas, M. M., Lingappa, U. F., Lamb, M. P., Rowland, J. C., West, A. J., Li, G., et al. (2021). Impact of river channel lateral migration on microbial communities across a discontinuous permafrost floodplain. Applied and Environmental Microbiology, 87(20), AEM.01339-21. https://doi.org/10.1128/AEM.01339-21 Douglas, M. M., Li, G. K., Fischer, W. W., Rowland, J. C., Kemeny, P. C., West, A. J., et al. (2022). Organic carbon burial by river meandering partially offsets bank erosion carbon fluxes in a discontinuous permafrost floodplain. Earth Surface Dynamics, 10(3), 421–435. https://doi.org/10.5194/esurf-10-421-2022 The dataset is comprised of a total of three separate data files based on the sample type and analysis, including a file that lists the sample locations, permafrost presence, and geomorphic landform.
DOI: 10.15485/1915661
title: Benzene polycarboxylic acids, lignin and hydrolysable lipids data from the whole-soil warming experiment at Blodgett Forest, CA, 2018, from: "Rapid loss of complex polymers and pyrogenic carbon in subsoils under whole soil warming"

description: This data package contains benzene polycarboxylic acids, lignin and hydrolysable lipids data used for the paper: “Rapid loss of subsoil plant-derived polymers and pyrogenic carbon with whole-soil warming”.On April 2018 (after 4.5 years of warming), we collected soil cores down to 90 cm depth from the whole soil profile warming experiment at the University of California Blodgett Forest Research Station, in the Sierra Nevada foothills near Georgetown, CA at 1370 m above sea level. Cores were collected from 6 experimental plots (three replicated blocks); samples were collected in 10 cm increments from 0 to 90 cm depth. This data package includes a file in .csv format and a file in .xlsx format, which can be accessed and processed using MS Excel or R. Benzene polycarboxylic acid, lignin and hydrolysable lipid concentrations are provided as processed data files.The aim of the measurements was to assess how +4°C of whole-soil warming for 4.5 years will affect structurally complex polymeric compounds at different soil depths. The research was supported by Swiss National Science Foundation (SNF) project 172744 (DEEP C) and U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under contract number DE-AC02-05CH11231.
DOI: 10.6084/m9.figshare.22337656
title: Blots (New)

description: It contains protein bands from WB experiments.
DOI: 10.6084/m9.figshare.22337656.v1
title: Blots (New)

description: It contains protein bands from WB experiments.
DOI: 10.15485/1962817
title: Mycorrhiza better predict soil fungal community composition and function than aboveground traits in temperate forest ecosystems

description: We sampled soil in the organic and mineral horizons beneath two AM-associated (Fraxinus americana, Thuja occidentalis) and two ECM-associated tree species (Betula alleghaniensis, and Tsuga canadensis), with an evergreen and deciduous species in each mycorrhizal group. To characterize fungal communities and organic matter decomposition beneath each tree species, we sequenced the ITS1 region of fungal DNA and measured the potential activity of carbon and nitrogen-targeting extracellular enzymes. Each tree species harbored distinct fungal communities, supporting the need to consider both mycorrhizal type and leaf habit. However, between tree characteristics, mycorrhizal type better predicted fungal communities. Across fungal guilds, saprotrophic fungi were the most important group in shaping fungal community differences in soils beneath all tree species. The effect of leaf habit on carbon and nitrogen-targeting hydrolytic enzymes depended on tree mycorrhizal association in the organic horizon, while oxidative enzyme activities were higher beneath EcM-associated trees across both soil horizons and leaf habits. These data include extracellular hydrolytic and oxidative enzyme activities, ITS sequencing fungal community data, soil carbon to nitrogen, and soil pH. Site level data include climate (mean annual temperature, precipitation), elevation, and soil series and order information.
DOI: 10.6084/m9.figshare.22337695
title: supplement

description: It contains data statistics of WB, TUNEL, CCK-8 and other experiments.
DOI: 10.6084/m9.figshare.22337695.v1
title: supplement

description: It contains data statistics of WB, TUNEL, CCK-8 and other experiments.
DOI: 10.34740/kaggle/dsv/5343106
title: 💥📰 Daily Breaking News Twitter Dataset
DOI: 10.34740/kaggle/dsv/5343102
title: 🇺🇦 Ukraine Conflict Twitter Dataset
DOI: 10.34740/kaggle/dsv/5343104
title: 🇺🇦 Ukraine Conflict Twitter Dataset
DOI: 10.34740/kaggle/dsv/5343031
title: #ChatGPT 1000 Daily 🐦 Tweets
DOI: 10.34740/kaggle/dsv/5343171
title: U.S. Coins
DOI: 10.25919/bbn1-mv04
title: Parkes observations for project P1101 semester 2022OCTS_17

description: We propose to carry out fortnightly monitoring of a very active repeater, FRB~190520, with the Parkes UWL system. Our current observations show that FRB~190520 is not only the most active FRB that can be observed with Parkes, but also shows extreme rotation measure (RM) variations and unique behavior at 2 to 3 GHz frequency. This makes UWL the ideal instrument to carry out in-depth studies of this repeating FRB. With this program, we expect to detect a large sample of bursts from FRB~190520, and in collaboration with the FAST telescope, we will study the local environment, emission properties, fluence distributions, and polarisation properties over an extremely wide bandwidth with high sensitivity.
DOI: 10.21227/cm3f-gz84
title: Standard Wifi Test

description: TBD
DOI: 10.34740/kaggle/dsv/5343400
title: U.S. Coins
DOI: 10.6084/m9.figshare.22578130
title: RSE sharing

description: Codes and data of RSE article (https://www.sciencedirect.com/science/article/pii/S0034425721005381)
DOI: 10.25417/uic.21288066
title: Blue Phosphorene Dataset for Graph Neural Network Training

description: Four zip files include the blue phosphorene structures and their total energy evaluated by density functional theory or a Tersoff potential.
DOI: 10.5517/ccdc.csd.cc2c4dlj
title: CCDC 2178977: Experimental Crystal Structure Determination

description: Related Article: Andrea Baschieri, Rita Mazzoni, Cristiana Cesari, Stefano Zacchini, Daniel Pecorari, Letizia Sambri|2023|Inorg.Chim.Acta|551|121472|doi:10.1016/j.ica.2023.121472
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnszt
title: CCDC 2194737: Experimental Crystal Structure Determination

description: Related Article: Krishnan Ravi, Jean-Louis K. GBE, Sanjay Mehra, Srinu Tothadi, Arvind Kumar, Ankush V. Biradar|2023|J.Environ. Chem. Eng.|11|109737|doi:10.1016/j.jece.2023.109737
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cnt95
title: CCDC 2194747: Experimental Crystal Structure Determination

description: Related Article: Krishnan Ravi, Jean-Louis K. GBE, Sanjay Mehra, Srinu Tothadi, Arvind Kumar, Ankush V. Biradar|2023|J.Environ. Chem. Eng.|11|109737|doi:10.1016/j.jece.2023.109737
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6614351
title: Laboratory Package: Efficient consumption between GraphQL API Wrappers and REST API

description: The laboratory package contains the data set of the national results regarding Internet shopping behavior in Ecuador 2020.
DOI: 10.5281/zenodo.6614352
title: Laboratory Package: Efficient consumption between GraphQL API Wrappers and REST API

description: The laboratory package contains the data set of the national results regarding Internet shopping behavior in Ecuador 2020.
DOI: 10.6084/m9.figshare.22492774
title: Thalassiosirales transcriptomes

description: Results associated with the analysis of Thalassiosirales transcriptomes from the English Channel and from Antarctica. Supplementary tables
DOI: 10.6084/m9.figshare.22492774.v1
title: Thalassiosirales transcriptomes

description: Results associated with the analysis of Thalassiosirales transcriptomes from the English Channel and from Antarctica. Supplementary tables
DOI: 10.26188/22578127.v1
title: Deep Dream visual SFs created in 2049 by machines

description: We asked Deepdream Generator to create an image that responds to an SF co-authored by 8x humans and Chatty G. Deepdream Generator was prompted to imagine it was 2049 and robots were sending the SF back in time to 2023. The training data was the, 'Dreams for Digital Spaces Speculative Fiction Postcard' also in this figshare project. Deep Dream created Image 1. We then prompted Deep Dream to regenerate the image, speculating that the planet survives the climate crisis to make Image 2.
DOI: 10.26188/22578127
title: Deep Dream visual SFs created in 2049 by machines

description: We asked Deepdream Generator to create an image that responds to an SF co-authored by 8x humans and Chatty G. Deepdream Generator was prompted to imagine it was 2049 and robots were sending the SF back in time to 2023. The training data was the, 'Dreams for Digital Spaces Speculative Fiction Postcard' also in this figshare project. Deep Dream created Image 1. We then prompted Deep Dream to regenerate the image, speculating that the planet survives the climate crisis to make Image 2.
DOI: 10.57770/zjp4b5
title: Profiles of oral microbiome associated with nasogastric tube feeding

description: Background: Dysbiosis of oral microbiome causes chronic diseases including dental caries and periodontitis, which frequently affect older patient populations. Severely disabled individuals with impaired swallowing functions may require nutritional supply via nasogastric (NG) tubes, further impacting their oral condition and possibly microbial composition. However, little is known about the effect of NG tube on oral microbes and its potential ramification. Methods: By using 16S rRNA amplicon sequencing, we characterized the tongue microbiome of 27 patients fed with NG tubes and 26 others fed orally. Results: The microbial compositions of NG-tube and oral-feeding patients were substantially different, with more Gram-negative aerobes enriched in the presence of NG tube. Specifically, NG-tube patients presented more opportunistic pathogens like Pseudomonas and Corynebacterium associated with pneumonia, and lower levels of commensal Streptococcus and Veillonella. Co-occurrence analysis further showed an inverse relationship between commensal and pathogenic species. Conclusion: We present a systematic, high-throughput profiling of oral microbiome with regards to long-term NG tube feeding among the older patient population.
DOI: 10.5517/ccdc.csd.cc2dnmc2
title: CCDC 2224354: Experimental Crystal Structure Determination

description: Related Article: Alina A. Sonina, Anatoly D. Kuimov, Nikita A. Shumilov, Igor P. Koskin, Tatyana Yu. Kardash, Maxim S. Kazantsev|2023|Cryst.Growth Des.|23|2710|doi:10.1021/acs.cgd.2c01501
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dq46h
title: CCDC 2225806: Experimental Crystal Structure Determination

description: Related Article: Irina I. Fedorova, Natalia S. Soldatova, Daniil M. Ivanov, Ksenia Nikiforova, Irina S. Aliyarova, Mekhman S. Yusubov, Peter M. Tolstoy, Rosa M. Gomila, Antonio Frontera, Vadim Yu. Kukushkin, Pavel S. Postnikov, Giuseppe Resnati|2023|Cryst.Growth Des.|23|2661|doi:10.1021/acs.cgd.2c01485
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dq47j
title: CCDC 2225807: Experimental Crystal Structure Determination

description: Related Article: Irina I. Fedorova, Natalia S. Soldatova, Daniil M. Ivanov, Ksenia Nikiforova, Irina S. Aliyarova, Mekhman S. Yusubov, Peter M. Tolstoy, Rosa M. Gomila, Antonio Frontera, Vadim Yu. Kukushkin, Pavel S. Postnikov, Giuseppe Resnati|2023|Cryst.Growth Des.|23|2661|doi:10.1021/acs.cgd.2c01485
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dq4bm
title: CCDC 2225810: Experimental Crystal Structure Determination

description: Related Article: Irina I. Fedorova, Natalia S. Soldatova, Daniil M. Ivanov, Ksenia Nikiforova, Irina S. Aliyarova, Mekhman S. Yusubov, Peter M. Tolstoy, Rosa M. Gomila, Antonio Frontera, Vadim Yu. Kukushkin, Pavel S. Postnikov, Giuseppe Resnati|2023|Cryst.Growth Des.|23|2661|doi:10.1021/acs.cgd.2c01485
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dq4dp
title: CCDC 2225812: Experimental Crystal Structure Determination

description: Related Article: Irina I. Fedorova, Natalia S. Soldatova, Daniil M. Ivanov, Ksenia Nikiforova, Irina S. Aliyarova, Mekhman S. Yusubov, Peter M. Tolstoy, Rosa M. Gomila, Antonio Frontera, Vadim Yu. Kukushkin, Pavel S. Postnikov, Giuseppe Resnati|2023|Cryst.Growth Des.|23|2661|doi:10.1021/acs.cgd.2c01485
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29c05w
title: CCDC 2125737: Experimental Crystal Structure Determination

description: Related Article: Jun Geng, Yaxuan Chen, Shuyu Xie, Hongyan Lin, Xiuli Wang|2023|Inorg.Chem.|62|5158|doi:10.1021/acs.inorgchem.2c04554
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22578235
title: TestInstances[Small+Large]

description: The dataset is for MILP model establishment of three-stage remanufacturing system scheduling problems.
DOI: 10.15151/esrf-es-1058390169
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2398 proposal and can be grouped into different topics as follows: host-pathogen interaction, new drug targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, SAXS, NMR (and cryo-EM), together with other biophysical studies) with the aim to fully understand the complexity of the biological macromolecular systems on study.
DOI: 10.15151/esrf-es-1059386552
title: BAG Montpellier

description: The BAG of Montpellier gathers researchers from distinct institutes (CBS, IGF, IRIM and LPHI) affiliated to the INSERM, the CNRS and the university of Montpellier. The CBS is a node of the national infrastructure FRISBI. In this context, it is developping new methodologies for efficient ligand screening by X-ray diffraction. It is also involved in solving the structure of novel therapeutic targets to develop novel drug candidates. The IGF is involved in characterizing membrane proteins (mainly GPCRs) in order to better understand their functioning for therapeutic application. The IRIM and LPHI are focusing on several therapeutic targets related to infectious diseases in order to identify and develop novel inhibitors. CBS and IGF use SAXS to unravel the organization and behavior of various macromolecular systems in solution. Finally, we also use cryo-electron microscopy to study some macromolecular assemblies.
DOI: 10.15151/esrf-es-1059607749
title: Proteins and protein/DNA/RNA complexes involved in biosynthesis, protein folding and degradation, splicing, cancer, host pathogen interacti

description: Pathogenesis and immune responses are very complex, multi-component processes. Understanding these processes' molecular mechanisms is essential for their regulation and the development of new therapies. Our Life Sciences Block Allocation Group (BAG) for synchrotron research at the ESRF includes groups from Georg-August University of Göttingen (Germany), Helmholtz Centre for Infection Research Structural Biology (Germany), Rudolf Virchow Center for Biomedical Research (Germany), University of Bielefeld (Germany), Bonn Rhein-Sieg University of Applied Sciences (Germany), Hannover Medical School (Germany) and University of the Western Cape (South Africa). Our BAG research focuses on the structural, mechanistic, and functional studies of a broad range of medically relevant biological systems, aiming to develop new therapies for emerging infections, antimicrobial resistance, chronic inflammatory conditions, and oncogenesis.
DOI: 10.15151/esrf-es-1057229032
title: Macromolecular Crystallography in Bordeaux/Lyon/Toulouse IECB IBGC CBMN / IBCP-MMSB ICBMS / IPBS

description: The different research teams who are part of this BAG are located in Bordeaux, Lyon and Toulouse. They are mainly working on worldwide health concerns or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises. Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-1129849572
title: Structural studies on large multidomain RNA assembly

description: Large RNAs fold into complex structures, with important functional implications. By studying the multi-domain assembly of a large ribozyme, our work sheds light onto the principles of folding and onto the biological mechanism of an important RNA molecule. Such cryoEM studies on RNA were impossible until recently, but have now become possible thanks to the improved cryoEM technology at ESRF, CM01.