cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.15dv41p33
title: Ecological significance of standing dead phytomass: marcescence as a puzzle piece to the nutrient cycle in temperate ecosystems

description: The plant economics spectrum (PES) drives nutrient cycling through effects
 on soil decomposers. However, dead phytomass may remain standing or unshed
 (marcescent), hardly accessible to decomposers, and be photodegraded. In
 arid zones, the significant part of marcescent phytomass can be decomposed
 without touching the ground. In temperate zones, photodegradation of
 marcescent phytomass is low but prompts important chemical changes, which
 affect its subsequent decomposability in the soil and alters the
 surrounding environment. It is unknown, however, how common marcescence is
 among different taxa and in which habitats, and how it is coordinated by
 PES traits. We sampled standing (marcescent) and lying (shed) dead
 phytomass from a broad spectrum of 127 herbaceous temperate species in a
 common garden experiment and related these parameters to PES traits,
 species ecological preferences, and phylogeny. Nearly all species (97%)
 kept their phytomass marcescent. Tall species with a small leaf area and
 high leaf carbon had a high level of marcescence. Marcescent species also
 preferred sites affected by severe (but not necessarily frequent)
 disturbance. The degree of marcescence was considerably conserved in
 phylogeny. Synthesis. Marcescence extends PES trait effects on ecosystems,
 particularly in immature habitats, being a common but overlooked
 phenomenon of the temperate flora.
description: We sampled standing
 (marcescent) and lying (shed) dead phytomass from a broad spectrum of 127
 herbaceous temperate species in a common garden experiment and related
 these parameters to PES traits, species ecological preferences, and
 phylogeny.
DOI: 10.15468/dl.vackc6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dryobates minor",
 "PublishingOrg is 38b4c89f-584c-41bb-bd8f-cd1def33e92f",
 "HasCoordinate is true",
 "Country is Sweden",
 "Year is 2025",
 {
 "or" : [
 "Month is March",
 "Month is April",
 "Month is May"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003582-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.12jm63z3r
title: Data from: The CST complex facilitates cell survival under oxidative genotoxic stress

description: Genomic DNA is constantly exposed to a variety of genotoxic stresses, and
 it is crucial for organisms to be equipped with mechanisms for repairing
 the damaged genome. Previously, it was demonstrated that the mammalian CST
 (CTC1-STN1-TEN1) complex, which was originally identified as a
 single-stranded DNA-binding trimeric protein complex essential for
 telomere maintenance, is required for survival in response to hydroxyurea
 (HU), which induces DNA replication fork stalling. It is still unclear,
 however, how the CST complex is involved in the repair of diverse types of
 DNA damage induced by oxidizing agents such as H2O2. STN1 knockdown (KD)
 sensitized HeLa cells to high doses of H2O2. While H2O2-induced DNA strand
 breaks throughout the cell cycle, STN1 KD cells were as resistant as
 control cells to H2O2 treatment when challenged in the G1 phase
 of the cell cycle, but they were sensitive when exposed to H2O2
 in S/G2/M phase. STN1 KD cells showed a failure of DNA synthesis and RAD51
 foci formation upon H2O2 treatment. Chemical inhibition of RAD51
 in shSTN1 cells did not exacerbate the sensitivity to H2O2, implying that
 the CST complex and RAD51 act in the same pathway. Collectively, our
 results suggest that the CST complex is required for maintaining genomic
 stability in response to oxidative DNA damage, possibly through
 RAD51-dependent DNA repair/protection mechanisms.
DOI: 10.5061/dryad.q573n5tpp
title: Data for: Use of viscera from hunted roe deer by vertebrate scavengers in summer in central European mountainous mixed forest

description: Carrion is a valuable resource in forests, providing sustenance for
 vertebrate and invertebrate scavenger communities and contributing to
 ecosystem functions, such as nutrient cycling. Intensive ungulate hunting,
 and thereby extraction of carcasses, removes large quantities of potential
 carrion from the system, denying a valuable resource from scavenger fauna.
 It may be possible to reduce the loss and negative consequences to forest
 biodiversity by retaining evisceration residues from hunted deer, where
 full carcasses cannot be retained. However, what roll evisceration
 residues play as a resource for scavengers in temperate forests is not
 well understood. In this study, we exposed 47 carrion samples from hunted
 roe deer, in front of triple sets of camera traps, to examine how hunting
 remains are removed and fed upon by vertebrate scavengers. Overall, 70 %
 of the samples were completely removed from experimental sites by
 vertebrates. We detected twelve vertebrate taxa feeding on evisceration
 residues, including martens (Martes spp.), red kites (Milvus milvus) and
 garden dormice (Eliomys quercinus). Common buzzards (Buteo buteo) and
 Eurasian jays (Garrulus glandarius) were the most frequent feeders on
 carrion samples, while red foxes (Vulpes vulpes) displaced the largest
 proportion of samples. Finally, we found a range of insectivorous bird and
 mammal species using hunting remains as a source for invertebrate prey,
 while not scavenging on the remains directly. We demonstrate that
 evisceration residues can be a valuable resource for a wide range of taxa
 and suggest that viscera retention from hunted game may contribute to
 resource provisioning for scavengers in forest ecosystems. 
description: Between May and October 2022
 eight roe deer viscera samples from hunted roe deer per month were exposed
 to vertebrate scavenging in front of camera traps on 47 individual
 locations. Samples visits, feeding and removal events of samples by
 vertebrate scavengers were assessed. Events were deemed independent if
 more than 20 minutes passed between consecutive pictures. Samples were
 observed for a maximum of 16 days. The data was used to assess the
 composition of the vertebrate scavenging fauna using evisceration
 residues, to determine which scavengers remove entire samples of residues
 and how long viscera are available to invertebrate
 scavenging.
DOI: 10.15468/dl.jgsw38
title: Occurrence Download

description: A dataset containing 5481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salamandra salamandra",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is 2025"
 ]
}

 The dataset includes 5481 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003584-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mehb2r
title: Occurrence Download

description: A dataset containing 1625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-103.29378 20.4124,-103.17382 20.4124,-103.17382 20.51139,-103.29378 20.51139,-103.29378 20.4124))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1625 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003581-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.cz8w9gj86
title: A major myna problem; invasive predator removal benefits female survival and population growth of a translocated island endemic

description: Invasive predators are a major driver of extinctions and continue to
 threaten native populations worldwide. Island eradications of (mostly
 mammalian) invasive predators have facilitated the reestablishment of
 numerous island-endemic populations. Other invasive taxa, such as some
 predatory birds, could pose a more persistent threat due to their ability
 to fly and actively re-invade even remote and isolated islands. However,
 the impact of invasive predatory birds has been largely overlooked. We
 report on a novel sex-specific impact of an invasive-nest predator, the
 common myna (Acridotheres tristis), on a reintroduced population of
 Seychelles warblers (Acrocephalus sechellensis); translocated from Cousin
 Island to Denis Island in 2004. Regular post-translocation monitoring
 revealed that female mortality was 20 % higher than males, leading to a
 60–70 % male-biased population sex-ratio between 2005 and 2015. This was
 attributed to common mynas inflicting severe injuries to incubating female
 Seychelles warblers while attempting to prey upon eggs in their nests.
 These effects likely contributed to the slower-than-expected population
 growth observed (relative to previous translocations of Seychelles
 warblers to other islands) over the same period. An eradication programme
 beginning in 2011 removed all common mynas from Denis by 2015.
 Subsequently, we observed a balancing of sex-specific survival and the
 population sex-ratio of Seychelles warblers and, consequently, accelerated
 population growth. This study demonstrates the importance of assessing the
 threat posed by all invasive taxa (not just mammals) to island
 conservation. Furthermore, we show how extended monitoring is needed to
 identify problems and develop solutions, post-translocation.
description: Please refer to the methods section of the manuscript.
DOI: 10.15468/dl.q4g3tz
title: Occurrence Download

description: A dataset containing 506 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Desmodus stocki"
 ]
}

 The dataset includes 506 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003583-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.c866t1gcb
title: Genetic architecture of dispersal behaviour in the post-harvest pest and model organism Tribolium castaneum

description: Dispersal behaviour is an important aspect of the life-history of animals.
 However, the genetic architecture of dispersal related traits is often
 obscure or unknown, even in well studied species. Tribolium castaneum is a
 globally significant post-harvest pest and established model organism, yet
 studies of its dispersal have shown ambiguous results and the genetic
 basis of this behaviour remains unresolved. We combine experimental
 evolution and agent-based modelling to investigate the number of loci
 underlying dispersal in T.castaneum, and whether the trait is sex-linked.
 Our findings demonstrate rapid evolution of dispersal behaviour under
 selection. We find no evidence of sex-biases in the dispersal behaviour of
 the offspring of crosses, supporting an autosomal genetic basis of the
 trait. Moreover, simulated data approximates experimental data under
 simulated scenarios where the dispersal trait is controlled by one or few
 loci, but not many loci. Levels of dispersal in experimentally inbred
 lines, compared with simulations, indicate that a single locus model is
 not well supported. Taken together, these lines of evidence support an
 oligogenic architecture underlying dispersal in Tribolium castaneum. These
 results have implications for applied pest management and for our
 understanding of the evolution of dispersal in the coleoptera, the world’s
 most species-rich order.
DOI: 10.5061/dryad.j0zpc86m9
title: The neuronal implementation of representational geometry in primate prefrontal cortex

description: Modern neuroscience has seen the rise of a population-doctrine that
 represents cognitive variables using geometrical structures in activity
 space. Representational geometry does not, however, account for how
 individual neurons implement these representations. Here, leveraging the
 principle of sparse coding, we present a framework to dissect
 representational geometry into biologically interpretable components that
 retain links to single neurons. Applied to extracellular recordings from
 the primate prefrontal cortex in a working memory task with interference,
 the identified components revealed disentangled and sequential memory
 representations including the recovery of memory content after
 distraction, signals hidden to conventional analyses. Remarkably, each
 component was contributed by small subpopulations of neurons with distinct
 electrophysiological properties and response dynamics. Modelling showed
 that such sparse implementations are supported by recurrently connected
 circuits as in prefrontal cortex. The perspective of neuronal
 implementation links representational geometries to their cellular
 constituents, providing mechanistic insights into how neural systems
 encode and process information.
DOI: 10.5281/zenodo.18396225
title: Nuclear Lipidomics  data of PANC-1 and HPNE normoxia and hypoxia induced cells
DOI: 10.5281/zenodo.18396226
title: Nuclear Lipidomics  data of PANC-1 and HPNE normoxia and hypoxia induced cells
DOI: 10.5281/zenodo.18337306
title: Barro Colorado Island Forest Succession Simulation Coherence Biomass prediction

description: This dataset contains processed patch-level forest above-ground biomass (AGB) and TanDEM-X coherence simulations for a 500 year succession run for tropical forest in Barro Colorado Island (BCI), Panama. The data are provided at two spatial resolutions (20 m and 100 m) and include multiple noise levels to assess the robustness of biomass estimation models.

The dataset consists of two CSV files:- data_20m.csv: Individual patch-level measurements at 20 m resolution, including biomass (t ha⁻¹), coherence magnitude, and canopy height metrics- data_100m.csv: Aggregated statistics at 100 m resolution, including mean, standard deviation, minimum, and maximum values for both biomass and coherence across aggregated patches

All biomass values are expressed in t ha⁻¹ and have been scaled to account for spatial resolution differences. Coherence measurements are provided at three noise levels (0%, 10%, and 20% additive Gaussian noise) to evaluate model sensitivity to data quality.
DOI: 10.5281/zenodo.18337307
title: Barro Colorado Island Forest Succession Simulation Coherence Biomass prediction

description: This dataset contains processed patch-level forest above-ground biomass (AGB) and TanDEM-X coherence simulations for a 500 year succession run for tropical forest in Barro Colorado Island (BCI), Panama. The data are provided at two spatial resolutions (20 m and 100 m) and include multiple noise levels to assess the robustness of biomass estimation models.

The dataset consists of two CSV files:- data_20m.csv: Individual patch-level measurements at 20 m resolution, including biomass (t ha⁻¹), coherence magnitude, and canopy height metrics- data_100m.csv: Aggregated statistics at 100 m resolution, including mean, standard deviation, minimum, and maximum values for both biomass and coherence across aggregated patches

All biomass values are expressed in t ha⁻¹ and have been scaled to account for spatial resolution differences. Coherence measurements are provided at three noise levels (0%, 10%, and 20% additive Gaussian noise) to evaluate model sensitivity to data quality.
DOI: 10.6078/d1th99
title: Data from: Using multiple scales of movement to highlight risk-reward strategies of coyotes (Canis latrans) in mixed-use landscapes

description: Many wildlife species vary habitat selection across space, time, and
 behavior to maximize rewards and minimize risk. Multi-scale research
 approaches that identify variation in wildlife habitat selection can
 highlight habitat preferences and risk tolerance, but also movement
 strategies that afford coexistence or cause conflict with humans. Here, we
 examined how anthropogenic and natural features influenced coyote (Canis
 latrans) habitat selection in a mixed-use, agricultural landscape in
 Mendocino County, California, USA. We used resource selection functions
 and hidden Markov models to test whether coyote selection for
 anthropogenic and natural features varied by time of day or by behavioral
 state (resting, foraging, and traveling). We found that coyotes avoided
 development, but, contrary to our expectations, coyotes selected for
 roads, agriculture, and areas used by rifle hunters regardless of diel
 period or behavioral state. While traveling, coyotes increased selection
 for roads and avoided ruggedness, indicating that unpaved roads may
 enhance connectivity for coyotes in mixed-use landscapes. Finally, we
 found that coyotes selected for mountain lion habitat when resting and at
 night, signifying that risk from natural predators was not a factor in
 habitat selection at coarse scales. Coyote habitat selection for places
 and times associated with human activity, without variation across scales,
 signals a potential for conflict if coyotes are perceived by people as a
 nuisance.
description: R scripts,
 hidden Markov model, and data used to estimate the influence of natural
 and anthropogenic features on the behavioral and temporal dynamics of
 coyotes in an agricultural mixed-use landscape in the Sanel Valley,
 Mendocino County, CA, USA.
DOI: 10.5061/dryad.d2547d876
title: Data for: Sampling affects population genetic inference: a case study of the Allen's (Selasphorus sasin) and rufous hummingbird (Selasphorus rufus) (Part 2/2)

description: Gene flow can affect evolutionary inference when species are undersampled.
 Here, we evaluate the effects of gene flow and geographic sampling on
 demographic inference of two hummingbirds that hybridize, Allen's
 hummingbird (Selasphorus sasin), and the rufous hummingbird (S. rufus).
 Using whole-genome data and extensive geographic sampling, we find
 widespread connectivity, with introgression far beyond the Allen's ×
 rufous hybrid zone, although the Z chromosome resists introgression beyond
 the hybrid zone. We test alternative hypotheses of speciation history of
 Allen's, rufous, and Calliope (S. calliope) hummingbirds and find
 that the rufous hummingbird is the sister taxon to Allen's
 hummingbird, and the Calliope hummingbird is the outgroup. A model
 treating the two subspecies of Allen's hummingbird as a single
 panmictic population fit observed genetic data better than models treating
 the subspecies as distinct populations, in contrast to morphological and
 behavioral differences and analyses of spatial population structure. With
 additional sampling, our study builds upon recent studies that came to
 conflicting conclusions regarding the evolutionary histories of these two
 species. Our results stress the importance of thorough geographic sampling
 when assessing demographic history in the presence of gene flow.
description: Fastq files that were aligned to the Anna's Hummingbird
 reference genome.
description: # Sampling affects population genetic inference: a case study of the
 Allen's (Selasphorus sasin) and rufous hummingbird (Selasphorus
 rufus)
 [https://doi.org/10.5061/dryad.d2547d876](https://doi.org/10.5061/dryad.d2547d876) ## Description of the data and file structure Fastq files that were aligned to the Anna's Hummingbird reference genome. Names of individuals are named as they are described in the supplemental material tables.
DOI: 10.5683/sp3/n0phat
title: Sociotechnical Simulation Study Source Data

description: This repository contains the data used to generate figures and tables in the unpublished paper "Connecting algorithmic fairness and fair outcomes in a sociotechnical simulation case study of AI-assisted healthcare". In this work, we present a simulation-based approach to explore how statistical definitions of algorithmic fairness translate to fairness in long-term outcomes, using AI-assisted breast cancer screening as a case example. We evaluate four fairness criteria and their impact on mortality rates and socioeconomic disparities, while also considering how radiologists’ reliance on AI and patients’ access to healthcare affect outcomes. Our results highlight how algorithmic fairness does not directly translate into fair and equitable outcomes, underscoring the importance of integrating sociotechnical perspectives in order to gain a holistic understanding of fairness in AI.
DOI: 10.5061/dryad.cc2fqz6c2
title: Data for: Cool, dry nights and short heatwaves during growth result in longer telomeres in temperate songbird nestlings

description: Exposure to rising sublethal temperatures can affect development and
 somatic condition, and thereby Darwinian fitness. In the context of
 climate warming, these changes could have implications for population
 viability, but they can be subtle and consequently difficult to quantify.
 Using telomere length (TL) as a known biomarker of somatic condition in
 early life, we investigated the impact of pre-hatching and nestling
 climate on six cohorts of wild nestling superb fairy-wrens (Malurus
 cyaneus) in temperate south-eastern Australia. Models incorporating only
 climate information from the nestling phase were best supported compared
 to those including the (pre-)laying to incubation phase (previously shown
 to affect mass) or both phases combined. This implies that nestling TL is
 most sensitive to ambient climate in the nestling phase. The top model
 showed a negative relationship between early-life TL and nestling mean
 daily minimum temperature when rainfall was low which gradually became
 positive with increasing rainfall. In addition, there was a positive
 relationship between TL and the frequency of hot days (daily maximum
 temperature ≥ 35°C), although these temperatures were rare and short-term.
 Including other pre-hatching and nestling period climate variables (e.g.,
 mean daily maximum temperature and mean diurnal temperature variability)
 did not improve the prediction of nestling TL. Overall, our results
 suggest that cooler nights when conditions are dry, and short-term
 temperature spikes above 35°C during development are conducive for somatic
 maintenance. While these findings indicate a potential pathway for climate
 warming to impact wildlife fitness, they emphasise the need to elucidate
 the mechanisms underlying these complex associations.
DOI: 10.5061/dryad.xgxd254nc
title: Evaluation of oxidative stress markers in Rwanda during the SARS-CoV-2 pandemic: a cross-sectional study

description: SARS-CoV-2 is mainly described as endothelial dysfunction, and due to the
 bidirectional link between oxidative stress and endothelial dysfunction,
 we initiated a program directed to the evaluation of the oxidative status
 of the population of Rwanda by measuring spectrophotometrically their
 plasma Reactive Oxygen Metabolites (dROMs) and Plasma Antioxidant
 Potential (PAT). The reference population was chosen to reflect the
 absence of actual or past SARS-CoV-2 infections as well as other
 clinically established infective status and reference intervals for d-ROM
 and PAT were identified. The average d-ROM was 378.6 UCARR with a standard
 deviation of 105.2. The average PAT value was 2853.6, with a standard
 deviation of 635.7 UCOR. On the basis of the published values for the
 Caucasian and East Asian populations, the average value of d-ROM obtained
 in Rwanda was significantly higher than expected. Conversely, the average
 PAT value was at the upper limit according to the averaged values for
 healthy Caucasian populations. The results of this study, the first so far
 reported on a sub-Saharan population, can effectively be used as a
 baseline value for clinical management of inflammatory conditions, for the
 stratification of at-risk individuals and to inform recommendations for
 effective use of public health resources.