cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.zcrjdfng3
title: Opsin data from: Multiple axes of visual system diversity in Ithomiini, an ecologically diverse tribe of mimetic butterflies

description: The striking structural variation seen in arthropod visual systems can be
 explained by the overall quantity and spatio-temporal structure of light
 within habitats coupled with developmental and physiological constraints.
 However, little is currently known about how fine-scale variation in
 visual structures arise across shorter evolutionary and ecological scales.
 In this study, we characterise patterns of interspecific (between
 species), intraspecific (between sexes) and intraindividual (between eye
 regions) variation in the visual system of four ithomiine butterfly
 species. These species are part of a diverse 26-Myr-old Neotropical
 radiation where changes in mimetic colouration are associated with
 fine-scale shifts in ecology, such as microhabitat preference. By using a
 combination of selection analyses on visual opsin sequences, in-vivo
 ophthalmoscopy, micro-computed tomography (micro-CT),
 immunohistochemistry, confocal microscopy, and neural tracing, we quantify
 and describe physiological, anatomical, and molecular traits involved in
 visual processing. Using these data, we provide evidence of substantial
 variation within the visual systems of Ithomiini, including: i) relaxed
 selection on visual opsins, perhaps mediated by habitat preference, ii)
 interspecific shifts in visual system physiology and anatomy, and iii)
 extensive sexual dimorphism, including the complete absence of a
 butterfly-specific optic neuropil in the males of some species. We
 conclude that considerable visual system variation can exist within
 diverse insect radiations, hinting at the evolutionary lability of these
 systems to rapidly develop specialisations to distinct visual ecologies,
 with selection acting at both the perceptual, processing, and molecular
 level.
description: # Opsin data from: Multiple axes of visual system diversity in Ithomiini,
 an ecologically diverse tribe of mimetic butterflies
 [https://doi.org/10.5061/dryad.zcrjdfng3](https://doi.org/10.5061/dryad.zcrjdfng3) Give a brief summary of dataset contents, contextualized in experimental procedures and results. ## Description of the data and file structure These data consist of a zip folder containing: a) alignment .fasta files for all UV, B, and LW opsin coding sequences used in the selection analyses. Alignments were generated using MACSE v2. and manually cleaned and trimmed with SeaView v5. b) gene tree .treefile files for UV, B, and LW opsins used in the selection analyses, constructed using IQ-TREE (multi-core v1.6.12) using ModelFinder and ultrafast bootstrap. ## Sharing/Access information All opsin sequences have been uploaded GenBank (accession IDs can be found in Table S1 of Wainwright *et al.* 2023)
DOI: 10.22008/promice/data/ice_discharge/d/v02/b1cb0x
title: GIS_err.csv

description: Greenland error. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/natnyd
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/bta4uf
title: region_coverage.csv

description: Regional coverage. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/qlrc5r
title: README.txt

description: README. Git hash: 540a61a
DOI: 10.5281/zenodo.18324755
title: Supplement to: Vitamin D3 Is Not a Limiting Nutrient Regarding Growth Performance and Tibia Parameters in the Rearing Period of Laying Hens Bred for High Laying Performance Compared to Non-Selected Resource Populations

description: Data sets are displayed for the publication: 

"Vitamin D3 Is Not a Limiting Nutrient Regarding Growth Performance and Tibia Parameters in the Rearing Period of Laying Hens Bred for High Laying Performance Compared to Non-Selected Resource Populations"

Content: Bone damages in laying hens are of great concern in poultry farming. Besides various risk factors like housing systems or nutrient supply during egg production, it has often been hypothesized that genetically high-performing laying hens may be more prone to bone damages. The relevance of dietary support during the rearing period of pullets for optimal bone development has been little addressed so far. In the present study, an increasing dietary vitamin D3 content within EU legislation was tested during the first 12 weeks of life in two high and two moderate-performing pullet lines (white and brown layer lines). Three experimental diets differed only regarding the added vitamin D3 amount (300/1000/3000 IU Cholecalciferol/kg diet). After every 4 weeks, randomly chosen animals per genotype and dietary treatment were slaughtered for dissection. Serum 25(OH)-Vitamin D3 concentrations, performance parameters and tibiotarsal parameters were measured.
DOI: 10.22008/promice/data/ice_discharge/d/v02/nxueb9
title: region_D.csv

description: Regional discharge. Git hash: 540a61a
DOI: 10.5061/dryad.sj3tx967b
title: Neuroanatomical shifts mirror patterns of ecological divergence in three diverse clades of mimetic butterflies

description: Microhabitat partitioning in heterogenous environments can support more
 diverse communities but may expose partitioned species to distinct
 perceptual challenges. Divergence across microhabitats could therefore
 lead to local adaptation to contrasting sensory conditions across small
 spatial scales, but this aspect of community structuring is rarely
 explored. Diverse communities of ithomiine butterflies provide an example
 where closely related species partition tropical forests, where shifts in
 mimetic colouration are tightly associated with shifts in habitat
 preference. We test the hypothesis that these mimetic and ecological
 shifts are associated with distinct patterns of sensory neural investment
 by comparing brain structure across 164 individuals of 16 species from
 three ithomiine clades. We find distinct brain morphologies between
 Oleriina and Hypothyris, which are mimetically homogenous and occupy a
 single microhabitat. Oleriina, which occur in low-light micro-habitats,
 invests less in visual brain regions than Hypothyris, with one notable
 exception, Hyposcada anchiala, the only Oleriina sampled to have converged
 on mimicry rings found in Hypothyris. We also find that Napeogenes, which
 has diversified into a range of mimicry rings, shows intermediate patterns
 of sensory investment. We identify flight height as a critical factor
 shaping neuroanatomical diversity, with species that fly higher in the
 canopy investing more in visual structures. Our work suggests that the
 sensory ecology of species may be impacted by, and interact with, the ways
 in which communities of closely related organisms are adaptively
 assembled.
DOI: 10.5281/zenodo.18324754
title: Supplement to: Vitamin D3 Is Not a Limiting Nutrient Regarding Growth Performance and Tibia Parameters in the Rearing Period of Laying Hens Bred for High Laying Performance Compared to Non-Selected Resource Populations

description: Data sets are displayed for the publication: 

"Vitamin D3 Is Not a Limiting Nutrient Regarding Growth Performance and Tibia Parameters in the Rearing Period of Laying Hens Bred for High Laying Performance Compared to Non-Selected Resource Populations"

Content: Bone damages in laying hens are of great concern in poultry farming. Besides various risk factors like housing systems or nutrient supply during egg production, it has often been hypothesized that genetically high-performing laying hens may be more prone to bone damages. The relevance of dietary support during the rearing period of pullets for optimal bone development has been little addressed so far. In the present study, an increasing dietary vitamin D3 content within EU legislation was tested during the first 12 weeks of life in two high and two moderate-performing pullet lines (white and brown layer lines). Three experimental diets differed only regarding the added vitamin D3 amount (300/1000/3000 IU Cholecalciferol/kg diet). After every 4 weeks, randomly chosen animals per genotype and dietary treatment were slaughtered for dissection. Serum 25(OH)-Vitamin D3 concentrations, performance parameters and tibiotarsal parameters were measured.
DOI: 10.22008/promice/data/ice_discharge/d/v02/cm4zvd
title: region_err.csv

description: Regional error. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/wzu9t8
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/k93rm3
title: sector_coverage.csv

description: Sector coverage. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/xnrv9l
title: sector_D.csv

description: Sector discharge. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/jgu7vw
title: sector_err.csv

description: Sector error. Git hash: 540a61a
DOI: 10.5061/dryad.vt4b8gtvf
title: FishShapes v1: functionally relevant measurements of teleost shape and size on three dimensions

description: Teleost fishes account for 96% of all fish species and exhibit a
 spectacular variety of body forms. Teleost lineages range from deep-bodied
 to elongate (e.g. eels, needlefish), laterally compressed (e.g.
 ribbonfish) to globular (e.g. pufferfish) and include uniquely shaped
 lineages such as seahorses, flatfishes and ocean sunfishes. Adaptive body
 shape convergence within fishes has long been hypothesized but the nature
 of the relationships between fish form and ecological and environmental
 variables remain largely unknown at the macroevolutionary scale. To
 facilitate the investigation of the interacting factors influencing
 teleost body shape evolution we measured 8 functionally relevant linear
 traits on adult-sized specimens along with specimen mass. Linear
 measurements of standard length, maximum body depth, maximum fish width,
 lower jaw length, mouth width, head depth, minimum caudal peduncle depth
 and minimum caudal peduncle width were taken in millimeters with calipers,
 or tape measures for oversized specimens. We measured these traits on a
 total of 16523 specimens (1-3 specimens per species) at the Smithsonian
 National Museum of Natural History and took approximately 7000 person
 hours of data collection to complete. The data went through a three-step
 error-checking process to clean and validate the data and then species
 averages were calculated. We present the complete specimen dataset, which
 encompasses approximately one fifth of extant teleost species diversity,
 spanning ~90% of teleost families and ~96% of orders. The species and
 family names are compatible with the FishBase taxonomy (Pauly &
 Froese, 2019) and the order information with the phylogenetically informed
 taxonomy of Betancur-R et al. (2014). This dataset is licensed under a
 Creative Commons Attribution - Non-Commercial 4.0 International License
 (CC BY-NC), please cite this paper when using the data or a subset of it.
description: Use any text editor or spreadsheet software to access the
 dataset
DOI: 10.22008/promice/data/ice_discharge/d/v02/bvkgzf
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 540a61a
DOI: 10.22008/promice/data/ice_discharge/d/v02/dg8szd
title: gate_coverage.csv

description: Gate coverage. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/o2iv3k
title: gate_D.csv

description: Gate discharge. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/rbv6qm
title: gate_err.csv

description: Gate errors. Git hash: 5e170e4*
DOI: 10.5061/dryad.m0cfxpp67
title: Seasonal species richness of birds on the world’s islands and its geographical correlates

description: Migratory birds occur on islands during different seasons of the year,
 which results in seasonal variation in species richness. These patterns
 and their geographical correlates have not been examined. We used 20 years
 of bird observations on 690 islands to examine how seasonal species
 richness estimates vary as a function of island area, isolation, and
 latitude. Species richness was highest on islands within the mid-latitudes
 of the Northern Hemisphere during migration and on islands within tropical
 latitudes during the non-breeding season. Area defined positive,
 non-linear relationships with species richness across seasons, with the
 steepest slopes occurring with islands &gt;1,100 km2. Distance to
 mainland defined negative, non-linear relationships with species richness
 across seasons, with the strongest slopes occurring with islands located
 &gt;150 km from the mainland. Species-area relationships were weakest
 for the most remote islands and strongest for islands at intermediate
 distances to the mainland. Intermediate proximity to other islands was a
 poor predictor of species richness. Our findings emphasize the presence of
 seasonally dynamic relationships, the enhanced role of evolutionary
 processes on larger islands, the unique ecology of the world’s most remote
 islands, and the importance of islands as stopover sites and wintering
 grounds for migratory bird species.
DOI: 10.22008/promice/data/ice_discharge/d/v02/zg5xrl
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/ipv5eu
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/xufglf
title: GIS_D.csv

description: Greenland discharge. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/eobhib
title: GIS_err.csv

description: Greenland error. Git hash: 5e170e4*
DOI: 10.5061/dryad.dbrv15f40
title: Data for: Co-evolution of dormancy and dispersal in spatially autocorrelated landscapes

description: The evolution of dispersal can be driven by spatial processes, such as
 landscape structure, and temporal processes, such as disturbance.
 Dormancy, or dispersal in time, is generally thought to evolve in response
 to temporal processes. In spite of broad empirical and theoretical
 evidence of trade-offs between dispersal and dormancy, we lack evidence
 that spatial structure can drive the evolution of dormancy. Here, we
 develop a simulation-based model of the joint evolution of dispersal and
 dormancy in spatially heterogeneous landscapes. We show that dormancy and
 dispersal are each favored under different landscape conditions, but not
 simultaneously under any of the conditions we tested. We further show
 that, when dispersal distances are short, dormancy can evolve directly in
 response to landscape structure. In this case, selection is primarily
 driven by benefits associated with avoiding kin competition. Our results
 are similar in both highly simplified and realistically complex
 landscapes.
description: These data were collected using a spatially explicit
 individual-based simulation. The full dataset was generated using code in
 the ./src.zip folder and summarized using code in the ./code to summarize
 full datasets.zip folder. The summarized datasets are in the
 ./model_output.zip folder. The figures in the manuscript can be generated
 using code in the ./figure code.zip folder. Descriptions of all files are
 in the README.
description: To access these data, you will need to use R or RStudio.
DOI: 10.22008/promice/data/ice_discharge/d/v02/dxjwp5
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/or8e5t
title: README.txt

description: README. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/6amlia
title: region_coverage.csv

description: Regional coverage. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/r3ei7k
title: region_err.csv

description: Regional error. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/tekfgu
title: region_D.csv

description: Regional discharge. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/laum5r
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/y8efjn
title: sector_coverage.csv

description: Sector coverage. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/foxvwx
title: sector_D.csv

description: Sector discharge. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/b6dpz7
title: sector_err.csv

description: Sector error. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/yyvezt
title: sector.nc

description: Sector discharge, coverage, and error. Git hash: 5e170e4*
DOI: 10.22008/promice/data/ice_discharge/d/v02/iwgnwt
title: gate_coverage.csv

description: Gate coverage. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/8314vb
title: gate_err.csv

description: Gate errors. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/oo6ucd
title: gate_D.csv

description: Gate discharge. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/4hc1jq
title: gate.nc

description: Gate discharge, coverage, error, and metadata. Git hash: 5e170e4
DOI: 10.5061/dryad.z08kprrg2
title: Older populations of the invader Solidago canadensis exhibit stronger positive plant-soil feedbacks and competitive ability in China

description: PREMISE The enemy release hypothesis predicts that release from natural
 enemies, including soil-borne pathogens, liberates invasive plants from a
 negative regulating force. Nevertheless, invasive plants may acquire novel
 enemies and mutualists in the introduced range, which may cause variable
 effects on invader growth. However, how soil microorganisms may influence
 competitive ability of invasive plants along invasion chronosequences has
 been little explored. METHODS Using the invasive plant Solidago
 canadensis, we tested whether longer residence times are associated with
 stronger negative plant-soil feedbacks and thus weaker competitive
 abilities at the individual level. We grew S. canadensis individuals from
 36 populations with different residence times in competition versus no
 competition and in three different types of soils: (1) conspecific
 rhizospheric soils, (2) soil from uninvaded patches, and (3) sterilized
 soil. For our competitor treatments, we constructed synthetic communities
 of four native species Bidens parviflora, Solanum nigrum, Kalimeris
 indica, and Mosla scabra, which naturally co-occur with S. canadensis in
 the field. RESULTS Solidago canadensis populations with longer residence
 times experienced stronger positive plant-soil feedbacks and had greater
 competitive responses (i.e., produced greater above-ground biomass and
 grew taller) in conspecific rhizospheric soils than in sterilized and
 uninvaded soils. Moreover, S. canadensis from older populations
 significantly suppressed above-ground biomass of the native communities in
 rhizospheric and uninvaded soils but not in sterilized soil. CONCLUSIONS
 The present results suggest that older populations of S. canadensis
 experience stronger positive plant-soil feedback, which may enhance their
 competitive ability against native plant communities.
DOI: 10.22008/promice/data/ice_discharge/d/v02/2hh9f7
title: GIS_D.csv

description: Greenland discharge. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/k9mgik
title: GIS_coverage.csv

description: Greenland coverage. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/6n8l6a
title: GIS.nc

description: Greenland discharge, coverage, and error. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/stfozj
title: GIS_err.csv

description: Greenland error. Git hash: 5e170e4
DOI: 10.5281/zenodo.17899778
title: EFSA Opinion on the risks for human health related to the presence of plant lectins in food: Annex E on Dietary Exposure estimations

description: Annex to EFSA’s Opinion on the risks for human health related to the presence of plant lectins in food.

Annex E includes the estimations of the acute dietary exposure to lectins. 

 

*Deceased, active until February 2025 
description: EU; en; xlsx; https://connect.efsa.europa.eu/RM/s/help
DOI: 10.22008/promice/data/ice_discharge/d/v02/cnotxw
title: region_D.csv

description: Regional discharge. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/qtnadv
title: region_coverage.csv

description: Regional coverage. Git hash: 5e170e4
DOI: 10.5061/dryad.wpzgmsbq7
title: Comparing field-based management approaches for invasive Winter Heliotrope (Petasites pyrenaicus: Asteraceae)

description: Winter Heliotrope (Petasites pyrenaicus, previously P. fragrans), is a
 persistent, rhizome-forming species found throughout the Mediterranean
 region and North Africa and is an Invasive Alien Plant (IAP) in the UK and
 Ireland. P. pyrenaicus excludes native flora by forming a dense, compact
 canopy that persists for much of the growing season, and is often found
 growing in rough ground, riparian areas and along communication routes,
 incurring significant management costs at sites of conservation interest.
 Our study describes the first field-based assessment of P. pyrenaicus
 control treatments, testing 12 physical and/or chemical treatments in
 replicated 1 m2 plots over four years and one chemical treatment over
 three years. Treatments focused on understanding phenology and resource
 allocation to exploit rhizome source-sink relationships in P. pyrenaicus.
 Multiple-stage glyphosate- and picloram-based treatments reduced leaf
 canopy cover to zero (%) over time, though no treatment completely
 eradicated P. pyrenaicus. When designing management strategies, effective
 P. pyrenaicus control may be achieved by a single annual soil and/or
 foliar application of picloram at 1.34 kg AE ha-1 in spring, or by a
 single annual foliar application of glyphosate in spring at 2.16 kg AE
 ha-1. Control is not improved by the addition of other herbicides or
 physical treatment methods, underlining the importance of these herbicides
 for perennial invasive plant management. This work confirms the importance
 of considering plant phenology, resource allocation and rhizome
 source-sink relationships, to increase treatment efficacy and reduce the
 environmental impacts associated with the management of P. pyrenaicus and
 other invasive, rhizome forming species.
DOI: 10.5281/zenodo.17899777
title: EFSA Opinion on the risks for human health related to the presence of plant lectins in food: Annex E on Dietary Exposure estimations

description: Annex to EFSA’s Opinion on the risks for human health related to the presence of plant lectins in food.

Annex E includes the estimations of the acute dietary exposure to lectins. 

 

*Deceased, active until February 2025 
description: EU; en; xlsx; https://connect.efsa.europa.eu/RM/s/help
DOI: 10.22008/promice/data/ice_discharge/d/v02/5kkhbh
title: region_err.csv

description: Regional error. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/5xuoha
title: region.nc

description: Regional discharge, coverage, and error. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/umgfsn
title: sector_coverage.csv

description: Sector coverage. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/hdi3jr
title: sector_D.csv

description: Sector discharge. Git hash: 5e170e4
DOI: 10.22008/promice/data/ice_discharge/d/v02/obfvdr
title: sector_err.csv

description: Sector error. Git hash: 5e170e4