cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1335989.v2
title: Vascular plants at extreme elevations in eastern Ladakh, northwest Himalayas

description: <b><i>Background</i></b>: Due to the dry continental climate, the mountains of eastern Ladakh are unglaciated up to 6200–6400 m, with relatively large areas of developed soils between 5600 and 6000 m covered by sparse subnival vegetation. However, there are no studies on the composition of plant assemblages from such extreme elevations, their microclimates, vertical distributions and adaptive strategies.<b><i>Aims</i></b>: The subnival vegetation was described and the relationship between microclimate, species distribution and species functional traits was analysed.<b><i>Methods</i></b>: In total, 481 vegetation samples from 91 permanent plots, a floristic database of Ladakh and extensive microclimate measurements were used. Measurements of 15 functional traits were made and their relationship with species distribution between 4600 and 6150 m was tested.<b><i>Results</i></b>: The subnival zone was characterised by extreme diurnal temperature fluctuations, a short growing season (between 88 and 153 days) and low soil temperature during the growing season (between 2.9 °C and 5.9 °C). It hosted 67 species, mainly hemicryptophytes, and ranged from ca. 5600 m to the highest known occurrence of vascular plants in the region (6150 m). The most common plant families were Brassicaceae, Asteraceae, Poaceae, Fabaceae and Cyperaceae. Subnival specialists with narrow elevational ranges represented 42% of the flora; these species were shorter, had relatively higher water content and water-use efficiency and contained more nutrients and soluble carbohydrates than species with a wider elevational range.<b><i>Conclusions</i></b>: The subnival vegetation of eastern Ladakh is dominated by generalist species with wide vertical ranges and not by high-elevation specialists. These findings, in view of the vast unglaciated areas available for range extension, suggest a relatively high resilience of the subnival flora to climate change in this region.
DOI: 10.6084/m9.figshare.1337910.v28
title: COS Test files

description: This does not include an actual research. These filesets are for testing purposes only.
DOI: 10.6084/m9.figshare.1335980.v1
title: Computational modelling of the antischistosomal activity for neolignan derivatives based on the MIA-SAR approach

description: Theoretical models for exploring the antischistosomal activity of a dataset of 18 synthetic neolignans are built using the multivariate image analysis applied to structure–activity relationships (MIA-SAR) approach. The obtained models were validated using the accuracy (Acc) in leave-one-out cross-validation, external validation and Y-randomization procedures, yielding correct classification superior to 80%, 70% and 60%, respectively. Additionally, a comparison was made of the models obtained from binary (black and white) and coloured images; the colours (pixel values) were selected to correspond to chemical properties. It was observed that the models obtained from coloured images with pixel values corresponding to electronegativity (known as the aug-MIA-SAR<sub><sub>colour</sub></sub> approach) generally yielded superior statistical parameters compared with those obtained from binary images (MIA-SAR) and randomly coloured images (atoms are coloured according to their type) with atomic sizes corresponding to Van der Waals radius (aug-MIA-SAR), respectively. Mechanistic interpretation of the influence of different substituents on the antischistosomal activity revealed that methoxy substituents in the R1 (or R2) and R5 positions of the neolignan scaffold are indispensable for the antischistosomal activity. The obtained results provide knowledge of the possible structural modifications to yield novel neolignan compounds with antischistosomal activity.
DOI: 10.6084/m9.figshare.1335912
title: Growth, inter- and intraspecific variation, palaeobiogeography, taphonomy and systematics of the Cenozoic ghost shrimp <i>Glypturus</i>

description: Studies in systematic palaeontology are greatly aided when numerous, well-preserved specimens are available so that quantitative methods can be used to substantiate qualitative observations. This is often not the case for fossil decapod crustaceans due to their relatively low preservation potential. Here, we examined primarily two large collections of the well-preserved ghost shrimp <i>Glypturus</i> from the Holo-Pleistocene of Panama and the late Miocene of Florida. Using descriptive, bivariate, multivariate and geometric morphometric methods, two new species are described based on appendage material: <i>Glypturus panamacanalensis</i> sp. nov. and <i>G. sikesi</i> sp. nov. New characters are identified, and size-related and intraspecific variation are assessed for these taxa and modern <i>G. acanthochirus</i>. Taxonomic placement of single specimens from other localities was confirmed by multivariate methods. Furthermore, <i>Glypturus</i> is revised, especially with regard to Western Atlantic species that inhabited both carbonate and siliciclastic environments. <i>Callianassa anguillensis</i>, <i>C. latidigata</i>, and <i>Neocallichirus? quisquellanus</i> are referred to as <i>Glypturus</i> sp. until more material is available to determine the validity of these species. Diversity within <i>Glypturus</i> may thus be underestimated, thereby also impacting the assessment of phylogenetic relationships. Minor propodi appear under-represented relative to major propodi, suggesting a taphonomic bias. Single specimens of interest include a specimen of <i>G. panamacanalensis</i> sp. nov. exhibiting a peculiar swelling in the fixed finger and another showing damage on the propodal upper margin, suggesting failed predation or antagonistic behaviour. <i>Glypturus</i> is first found in the Oligocene in the Western Atlantic and may have expanded its palaeobiogeographical range since the Miocene. The genus was still present on the Pacific side of the Isthmus of Panama in the Holo-Pleistocene, but is only known from the Western Atlantic today, suggesting a relatively recent extinction on the Pacific side.http://zoobank.org/urn:lsid:zoobank.org:pub:C7F0C071-F2AD-4684-B277-037B6F91BF0E
DOI: 10.6084/m9.figshare.1335912.v2
title: Growth, inter- and intraspecific variation, palaeobiogeography, taphonomy and systematics of the Cenozoic ghost shrimp <i>Glypturus</i>

description: Studies in systematic palaeontology are greatly aided when numerous, well-preserved specimens are available so that quantitative methods can be used to substantiate qualitative observations. This is often not the case for fossil decapod crustaceans due to their relatively low preservation potential. Here, we examined primarily two large collections of the well-preserved ghost shrimp <i>Glypturus</i> from the Holo-Pleistocene of Panama and the late Miocene of Florida. Using descriptive, bivariate, multivariate and geometric morphometric methods, two new species are described based on appendage material: <i>Glypturus panamacanalensis</i> sp. nov. and <i>G. sikesi</i> sp. nov. New characters are identified, and size-related and intraspecific variation are assessed for these taxa and modern <i>G. acanthochirus</i>. Taxonomic placement of single specimens from other localities was confirmed by multivariate methods. Furthermore, <i>Glypturus</i> is revised, especially with regard to Western Atlantic species that inhabited both carbonate and siliciclastic environments. <i>Callianassa anguillensis</i>, <i>C. latidigata</i>, and <i>Neocallichirus? quisquellanus</i> are referred to as <i>Glypturus</i> sp. until more material is available to determine the validity of these species. Diversity within <i>Glypturus</i> may thus be underestimated, thereby also impacting the assessment of phylogenetic relationships. Minor propodi appear under-represented relative to major propodi, suggesting a taphonomic bias. Single specimens of interest include a specimen of <i>G. panamacanalensis</i> sp. nov. exhibiting a peculiar swelling in the fixed finger and another showing damage on the propodal upper margin, suggesting failed predation or antagonistic behaviour. <i>Glypturus</i> is first found in the Oligocene in the Western Atlantic and may have expanded its palaeobiogeographical range since the Miocene. The genus was still present on the Pacific side of the Isthmus of Panama in the Holo-Pleistocene, but is only known from the Western Atlantic today, suggesting a relatively recent extinction on the Pacific side.http://zoobank.org/urn:lsid:zoobank.org:pub:C7F0C071-F2AD-4684-B277-037B6F91BF0E
DOI: 10.6084/m9.figshare.1335912.v1
title: Growth, inter- and intraspecific variation, palaeobiogeography, taphonomy and systematics of the Cenozoic ghost shrimp <i>Glypturus</i>

description: Studies in systematic palaeontology are greatly aided when numerous, well-preserved specimens are available so that quantitative methods can be used to substantiate qualitative observations. This is often not the case for fossil decapod crustaceans due to their relatively low preservation potential. Here, we examined primarily two large collections of the well-preserved ghost shrimp <i>Glypturus</i> from the Holo-Pleistocene of Panama and the late Miocene of Florida. Using descriptive, bivariate, multivariate and geometric morphometric methods, two new species are described based on appendage material: <i>Glypturus panamacanalensis</i> sp. nov. and <i>G. sikesi</i> sp. nov. New characters are identified, and size-related and intraspecific variation are assessed for these taxa and modern <i>G. acanthochirus</i>. Taxonomic placement of single specimens from other localities was confirmed by multivariate methods. Furthermore, <i>Glypturus</i> is revised, especially with regard to Western Atlantic species that inhabited both carbonate and siliciclastic environments. <i>Callianassa anguillensis</i>, <i>C. latidigata</i>, and <i>Neocallichirus? quisquellanus</i> are referred to as <i>Glypturus</i> sp. until more material is available to determine the validity of these species. Diversity within <i>Glypturus</i> may thus be underestimated, thereby also impacting the assessment of phylogenetic relationships. Minor propodi appear under-represented relative to major propodi, suggesting a taphonomic bias. Single specimens of interest include a specimen of <i>G. panamacanalensis</i> sp. nov. exhibiting a peculiar swelling in the fixed finger and another showing damage on the propodal upper margin, suggesting failed predation or antagonistic behaviour. <i>Glypturus</i> is first found in the Oligocene in the Western Atlantic and may have expanded its palaeobiogeographical range since the Miocene. The genus was still present on the Pacific side of the Isthmus of Panama in the Holo-Pleistocene, but is only known from the Western Atlantic today, suggesting a relatively recent extinction on the Pacific side.http://zoobank.org/urn:lsid:zoobank.org:pub:C7F0C071-F2AD-4684-B277-037B6F91BF0E
DOI: 10.6084/m9.figshare.1335873
title: Gaussian Job Archive for CH4B11Cl11O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335873.v1
title: Gaussian Job Archive for CH4B11Cl11O

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335817
title: Leadership in Altruistic Punishment and Reward, wide, Excel

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335899.v1
title: Retrieving the HRF in resting state fMRI: methodology and applications

description: Poster presented ath OHBM 2014 conference, describing the methodology used to retrieve the hemodynamic response function (HRF) from resting state fMRI data, and the modifications to the HRF parameters induced by two different physiological states: eyes closed vs eyes open and propofol-induced loss of consciousness
DOI: 10.6084/m9.figshare.1335814
title: Leadership in Altruistic Punishment and Reward, long, R

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335815
title: Leadership in Altruistic Punishment and Reward, long, CSV

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335816
title: Leadership in Altruistic Punishment and Reward, wide, SPSS

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335815.v1
title: Leadership in Altruistic Punishment and Reward, long, CSV

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335817.v2
title: Leadership in Altruistic Punishment and Reward, wide, Excel

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335814.v1
title: Leadership in Altruistic Punishment and Reward, long, R

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335816.v1
title: Leadership in Altruistic Punishment and Reward, wide, SPSS

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335851.v1
title: new fileset

description: edit
DOI: 10.6084/m9.figshare.1335812
title: Leadership in Altruistic Punishment and Reward, wide, CSV

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335813
title: Leadership in Altruistic Punishment and Reward, wide, R

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335817.v1
title: Leadership in Altruistic Punishment and Reward

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335812.v1
title: Leadership in Altruistic Punishment and Reward, wide, CSV

description: For documentation, see OSF: https://osf.io/hdy4a/
DOI: 10.6084/m9.figshare.1335851.v2
title: Amazon air fungi

description: edit
DOI: 10.6084/m9.figshare.1335775
title: Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335851.v4
title: Amazon air fungi

description: <strong>Description</strong> Fungal large subunit ribosomal rDNA amplicons and shotgun metatransctipome sequence data and metadata for fungal communities in the atmosphere above the Amazon rainforest canopy in Brazil. Data collection procedures are described in the paper "Characterization of active and total fungal communities in the atmosphere over the Amazon rainforest" by Womack et al. (manuscript submitted to Biogeosciences). <strong>LSU files:</strong> amazon_air_fungi_metadata.txt - A tab-delimited text file with information on barcode and primer sequences and date of sample collection. The columns of the text file include a sample identifier (SampleID), barcode sequences (BarcodeSequence), reverse primer sequence (LinkerPrimerSequence), and the date of sample collection (Description). R3bc_R1_052913_062813a<strong>x</strong>.fastq - Raw LSU sequence data in FASTQ format, produced by a sequencing run using Illumina MiSeq 150bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. <strong>Metantranscriptome files:</strong> metatrans_barcode_file_edit.txt – Barcode file used for demultiplexing with the FASTX-Toolkit (http://hannonlab.cshl.edu/fastx_toolkit/). Raw metatranscriptome sequences produced by a sequencing run using Illumina HiSeq 150 bp paired-end sequencing technology. The paired-end sequences were joined using fastq-join (https://code.google.com/p/ea-utils/wiki/FastqJoin) and then demultiplexed using FASTX with the commands below: #join raw forward and reverse reads using fastq-join ./fastq-join raw_R1_cat.fastq raw_R2_cat.fastq -o raw_cat_ #barcode split cat raw_cat_un1.fastq | fastx_barcode_splitter.pl --bcfile metatrans_barcode_file_edit.txt --bol --prefix R1_unjoined cat raw_cat_un2.fastq | fastx_barcode_splitter.pl --bcfile metatrans_barcode_file_edit.txt --bol --prefix R2_unjoined cat raw_cat_join.fastq | fastx_barcode_splitter.pl --bcfile metatrans_barcode_file_edit.txt --bol --prefix joined For each sample day (Dec. 8, Dec. 9, Dec. 11) there are three files, R1_unjoined, R2_unjoined, and joined. The three files may have been split into multiple parts (a<strong>x</strong>).
DOI: 10.6084/m9.figshare.1335773
title: The thematic orientation of publications mentioned on social media: large-scale disciplinary comparison of social media metrics with citations.

description: Full paper text and Supplementary material 1 and 2 for the paper "The thematic orientation of publications mentioned on social media: large-scale disciplinary comparison of social media metrics with citations". To be published in Aslib Journal of Information Management (Vol, 67, N. 3).
DOI: 10.6084/m9.figshare.1335851.v3
title: Amazon air fungi

description: edit
DOI: 10.6084/m9.figshare.1335773.v3
title: The thematic orientation of publications mentioned on social media: large-scale disciplinary comparison of social media metrics with citation. Supplementary material 1 and 2

description: Supplementary material 1 and 2 for the paper "The thematic orientation of publications mentioned on social media: large-scale disciplinary comparison of social media metrics with citations". To be published in Aslib Journal of Information Management.
DOI: 10.6084/m9.figshare.1335775.v1
title: Wagner et al

description: Refer to readme files.
DOI: 10.6084/m9.figshare.1335752
title: data of toric IOL

description: Comparison of the visual performance of toric intraocular lenses with non-toric intraocular lenses of the same material.
DOI: 10.6084/m9.figshare.1335751
title: WikiPathways SD file (v.1)

description: First release of a Structure Data File (SDF) containing metabolites found in WikiPathways.
DOI: 10.6084/m9.figshare.1335775.v2
title: Wagner et al

description: Refer to readme files.
DOI: 10.6084/m9.figshare.1335734
title: Gaussian Job Archive for CH9F3O7S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335743
title: Porównanie skuteczności promocji: repozytorium, Acadamia.edu, ResearchGate.net

description: Porównanie liczby pobrać i lektur online trzech serwisów: Repozytorium AMUR, ResearchGate.net, Academia.edu. Publikacje autora: "Emanuel Kulczycki", zamieszone w latach 2011-2015. Dane z dniach: 15.03.2015 r.
DOI: 10.6084/m9.figshare.1335734.v1
title: Gaussian Job Archive for CH9F3O7S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335773.v4
title: The thematic orientation of publications mentioned on social media: large-scale disciplinary comparison of social media metrics with citation. Supplementary material 1 and 2

description: Supplementary material 1 and 2 for the paper "The thematic orientation of publications mentioned on social media: large-scale disciplinary comparison of social media metrics with citations". To be published in Aslib Journal of Information Management.
DOI: 10.6084/m9.figshare.1335733
title: Gaussian Job Archive for CH7F3O6S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335732
title: Gaussian Job Archive for CH7F3O6S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335733.v1
title: Gaussian Job Archive for CH7F3O6S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335775.v3
title: Temporal comparison and predictors of community composition on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335732.v1
title: Gaussian Job Archive for CH7F3O6S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335728
title: Gaussian Job Archive for CH7F3O6S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335775.v4
title: Temporal comparison and predictors of community composition on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335727
title: Gaussian Job Archive for CH5F3O5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335728.v1
title: Gaussian Job Archive for CH7F3O6S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335725
title: Gaussian Job Archive for CH3F3O4S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335727.v1
title: Gaussian Job Archive for CH5F3O5S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335775.v5
title: Temporal comparison and predictors of community composition on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335725.v1
title: Gaussian Job Archive for CH3F3O4S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1335688
title: get_single_paper_stats_from_doi

description: This is an example R script to request Mendeley statistics broken down into country information. You will have to include your Mendeley developer information in the R script (your_app_name) and in the config.yml file. Please refer to the following DOI if you use this R script in a publication: http://dx.doi.org/10.6084/m9.figshare.1335688
DOI: 10.6084/m9.figshare.1335775.v6
title: Temporal comparison and predictors of community composition on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335775.v7
title: Temporal comparison and predictors of community composition on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335775.v9
title: Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1335775.v8
title: Temporal comparison and predictors of community composition on undisturbed coral reef patches

description: Please refer to readme files.
DOI: 10.6084/m9.figshare.1334327
title: Clarke, De Decker & Van Herk (forthcoming)

description: Vowel plots for "Newfoundland" chapter in "Listening to the Past", edited by Raymond Hickey.
DOI: 10.6084/m9.figshare.1334305
title: Local Accounts of Opportunistic Encounters with Bush Dogs (Speothos venaticus) in the Rupununi Region of Guyana

description: The bush dog (Speothos venaticus) is naturally rare, extremely elusive and notoriously difficult to study in the field. The abundance, distribution, and ecological requirements of this species are poorly understood, hampering conservation and management efforts. More effective methods for collecting data that will increase our understanding and inform management are needed for this species. Previous studies have shown that bringing indigenous ecological knowledge (IEK) into the scientific process has considerable potential for improving research and natural resource management. By collaborating with subsistence resource users, scientists can boost productivity and cut costs, all while supporting conservation and building capacity in local communities. We present 78 reports of opportunistic encounters with bush dogs from surveys of key informants from the Rupununi Region of Guyana. In the absence of an effective tool for quantitative study of this species, more comprehensive surveys of local observations may be the best tool to inform management moving forward.