cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8305673.v1
title: Additional file 10: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S7. Annotation of JAR1 co-orthologs in Pogostemon cablin. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8305682
title: Additional file 13: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S9. Expression profiles of MeJA-responsive genes associated with JA synthesis and signaling in patchouli. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8305682.v1
title: Additional file 13: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S9. Expression profiles of MeJA-responsive genes associated with JA synthesis and signaling in patchouli. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.8305703
title: Additional file 5: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S2. Annotation of CDS with different protein databases. (XLSX 2631 kb)
DOI: 10.6084/m9.figshare.8305703.v1
title: Additional file 5: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S2. Annotation of CDS with different protein databases. (XLSX 2631 kb)
DOI: 10.6084/m9.figshare.8305709
title: Additional file 7: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S4. Summary of re-characterisation and transcription isoforms of genes annotated in pathways related to terpenoids biosynthesis. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8305709.v1
title: Additional file 7: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S4. Summary of re-characterisation and transcription isoforms of genes annotated in pathways related to terpenoids biosynthesis. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8305712
title: Additional file 8: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S5. List of DEGs in Pogostemon cablin under MeJA treatment. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.8305712.v1
title: Additional file 8: of Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin

description: Table S5. List of DEGs in Pogostemon cablin under MeJA treatment. (XLSX 190 kb)
DOI: 10.6084/m9.figshare.14597253
title: The effectiveness of coenzyme Q10, vitamin E, inositols, and vitamin D in improving the endocrine and metabolic profiles in women with polycystic ovary syndrome: a network Meta-analysis

description: This research evaluated the efficacy of oral nutritional agents including CoQ10, vitamin E, inositols and vitamin D on androgen-associated hormones, glycolipid metabolism and body weight in women with PCOS. A multi-database search was performed from inception to December 2020. Using multi-variate random effects method, a NMA was conducted by synthesizing data pooled from RCTs. It was registered with PROSPERO (registration number CRD42021230292). Twenty-three RCTs and 1291 participants were included. Based on NMA, CoQ10, vitamin E, CoQ10 combined with vitamin E, and inositols were successful in decreasing TT as compared with PA; vitamin E was superior to other agents. Vitamin E and inositols were successful in increasing SHBG levels; inositols were stronger than vitamin E. CoQ10 alone or combined with vitamin E, and inositols were successful in decreasing HOMA-IR. Inositols had the best results among included nutraceuticals to ameliorate HOMA-IR, FBG, FINS, TG, TC, and LDL-C and correlated to improvements in BMI. There was no significant difference between the CoQ10 or vitamin E group and the PA group in ameliorating lipid metabolism, and vitamin D had no positive effects in ameliorating hyperandrogenism, BMI, glycolipid metabolism profiles compared with PA. For women with PCOS, inositols supplementation have some certain advantages in increasing SHBG and improving glycolipid metabolism when compared with nutraceuticals like CoQ10, vitamin E, vitamin D. Besides, vitamin E may be a better option in reducing TT and increasing SHBG. CoQ10 alone or combined with vitamin E can be helpful in decreasing HOMA-IR as well.
DOI: 10.6084/m9.figshare.14597253.v1
title: The effectiveness of coenzyme Q10, vitamin E, inositols, and vitamin D in improving the endocrine and metabolic profiles in women with polycystic ovary syndrome: a network Meta-analysis

description: This research evaluated the efficacy of oral nutritional agents including CoQ10, vitamin E, inositols and vitamin D on androgen-associated hormones, glycolipid metabolism and body weight in women with PCOS. A multi-database search was performed from inception to December 2020. Using multi-variate random effects method, a NMA was conducted by synthesizing data pooled from RCTs. It was registered with PROSPERO (registration number CRD42021230292). Twenty-three RCTs and 1291 participants were included. Based on NMA, CoQ10, vitamin E, CoQ10 combined with vitamin E, and inositols were successful in decreasing TT as compared with PA; vitamin E was superior to other agents. Vitamin E and inositols were successful in increasing SHBG levels; inositols were stronger than vitamin E. CoQ10 alone or combined with vitamin E, and inositols were successful in decreasing HOMA-IR. Inositols had the best results among included nutraceuticals to ameliorate HOMA-IR, FBG, FINS, TG, TC, and LDL-C and correlated to improvements in BMI. There was no significant difference between the CoQ10 or vitamin E group and the PA group in ameliorating lipid metabolism, and vitamin D had no positive effects in ameliorating hyperandrogenism, BMI, glycolipid metabolism profiles compared with PA. For women with PCOS, inositols supplementation have some certain advantages in increasing SHBG and improving glycolipid metabolism when compared with nutraceuticals like CoQ10, vitamin E, vitamin D. Besides, vitamin E may be a better option in reducing TT and increasing SHBG. CoQ10 alone or combined with vitamin E can be helpful in decreasing HOMA-IR as well.
DOI: 10.6084/m9.figshare.5684383
title: Detailed secondary structure models of invertebrate 7SK RNAs

description: The 7SK RNA is a small nuclear RNA that is involved in the regulation of Pol-II transcription. It is very well conserved in vertebrates, but shows extensive variations in both sequence and structure across invertebrates. A systematic homology search extended the collection of 7SK genes in both Arthropods and Lophotrochozoa making use of the large number of recently published invertebrate genomes. The extended data set made it possible to infer complete consensus structures for invertebrate 7SK RNAs. These show that not only the well-conserved 5′- and 3′- domains but all the interior Stem A domain is universally conserved. In contrast, Stem B region exhibits substantial structural variation and does not adhere to a common structural model beyond phylum level.
DOI: 10.6084/m9.figshare.13024476
title: Additional file 12 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 12: Table S10. The significant KEGG enrichment analysis of the differentially enriched proteins in ML and FL.
DOI: 10.6084/m9.figshare.25303612.v1
title: Supplementary Material for: Expanding the Differential Diagnosis of the Painful Nail: A Case of an Onychopapilloma with Neuroma

description: Introduction: Onychopapilloma most commonly presents as longitudinal erythronychia, but diagnosis may be challenging in some cases due to varied clinical presentations. Most patients with onychopapillomas do not report associated pain, but instead more commonly report functional interference. 
Case Report: We present a case of a 74-year-old female with a 5-year history of splitting and lifting of the right thumbnail, accompanied by nail sensitivity and intermittent painful throbbing. Clinical examination was significant for a less than 1 mm red line with distal onycholysis. Love’s test and a cold test performed with ice-pack were negative. X-ray of the right thumb was negative for erosion or exostosis. Nail biopsy was performed and dermatopathology was consistent with onychopapilloma with a concomitant traumatic neuroma. 
Conclusion: We report a case of onychopapilloma with a concomitant traumatic neuroma. Subungual neuromas are extremely rare, and have not previously been associated with onychopapilloma. Our case supports the expansion of the differential diagnosis for a painful nail and demonstrates the importance of diagnostic confirmation with biopsy and histopathology.
DOI: 10.6084/m9.figshare.25303612
title: Supplementary Material for: Expanding the Differential Diagnosis of the Painful Nail: A Case of an Onychopapilloma with Neuroma

description: Introduction: Onychopapilloma most commonly presents as longitudinal erythronychia, but diagnosis may be challenging in some cases due to varied clinical presentations. Most patients with onychopapillomas do not report associated pain, but instead more commonly report functional interference. 
Case Report: We present a case of a 74-year-old female with a 5-year history of splitting and lifting of the right thumbnail, accompanied by nail sensitivity and intermittent painful throbbing. Clinical examination was significant for a less than 1 mm red line with distal onycholysis. Love’s test and a cold test performed with ice-pack were negative. X-ray of the right thumb was negative for erosion or exostosis. Nail biopsy was performed and dermatopathology was consistent with onychopapilloma with a concomitant traumatic neuroma. 
Conclusion: We report a case of onychopapilloma with a concomitant traumatic neuroma. Subungual neuromas are extremely rare, and have not previously been associated with onychopapilloma. Our case supports the expansion of the differential diagnosis for a painful nail and demonstrates the importance of diagnostic confirmation with biopsy and histopathology.
DOI: 10.6084/m9.figshare.13024482
title: Additional file 14 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 14: Table S12. The raw data of qRT-PCR in stems.
DOI: 10.6084/m9.figshare.13024494
title: Additional file 3 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 3: Table S1. The total identified proteins by iTRAQ in MS and FS.
DOI: 10.17028/rd.lboro.9878771
title: Supplementary files for: Characterization and effects of thermal cycling on the properties of paraffin/expanded graphite composites

description: Paraffin has been one of the most potential phase change materials (PCMs) in low-temperature latent heat storage. However, the low thermal conductivity of paraffin restricts its thermal performance and limits its large-scale applications. Adding a suitable proportion of expanded graphite (EG) into the paraffin can enhance the heat transfer rate, thus improve the thermal efficiency of the whole heat storage system. In this paper, five paraffin/EG composites with 2 wt%, 5 wt%, 10 wt%, 15 wt% and 20 wt% of EG were prepared to study their long-term characteristics. Effects of thermal cycling (up to 100 thermal cycles) on the thermophysical properties were studied, such as, phase transition temperature, latent heat, chemical compatibility, thermal stability and thermal conductivity. The paraffin/EG composite has the potential for converting intermittent electricity directly into heat, therefore, the effect of thermal cycling on electrical conductivity was also studied. The results showed that both phase transition temperature and latent heat decreased slightly after 100 thermal cycles, within 1% and 3% respectively. Thermal cycling changed the distribution and interaction between the paraffin and EG resulting in a lower temperature thermal decomposition process. Long-term thermal cycling also had a more negative effect on the increase rate in thermal and electrical conductivity achieved for higher EG content.
DOI: 10.17028/rd.lboro.9878771.v1
title: Supplementary files for: Characterization and effects of thermal cycling on the properties of paraffin/expanded graphite composites

description: Paraffin has been one of the most potential phase change materials (PCMs) in low-temperature latent heat storage. However, the low thermal conductivity of paraffin restricts its thermal performance and limits its large-scale applications. Adding a suitable proportion of expanded graphite (EG) into the paraffin can enhance the heat transfer rate, thus improve the thermal efficiency of the whole heat storage system. In this paper, five paraffin/EG composites with 2 wt%, 5 wt%, 10 wt%, 15 wt% and 20 wt% of EG were prepared to study their long-term characteristics. Effects of thermal cycling (up to 100 thermal cycles) on the thermophysical properties were studied, such as, phase transition temperature, latent heat, chemical compatibility, thermal stability and thermal conductivity. The paraffin/EG composite has the potential for converting intermittent electricity directly into heat, therefore, the effect of thermal cycling on electrical conductivity was also studied. The results showed that both phase transition temperature and latent heat decreased slightly after 100 thermal cycles, within 1% and 3% respectively. Thermal cycling changed the distribution and interaction between the paraffin and EG resulting in a lower temperature thermal decomposition process. Long-term thermal cycling also had a more negative effect on the increase rate in thermal and electrical conductivity achieved for higher EG content.
DOI: 10.6084/m9.figshare.13024503
title: Additional file 6 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 6: Table S4. The differentially enriched proteins identified using iTRAQ in ML and FL.
DOI: 10.6084/m9.figshare.13024503.v1
title: Additional file 6 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 6: Table S4. The differentially enriched proteins identified using iTRAQ in ML and FL.
DOI: 10.6084/m9.figshare.13024497
title: Additional file 4 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 4: Table S2. The total identified proteins by iTRAQ in ML and FL.
DOI: 10.6084/m9.figshare.13024479
title: Additional file 13 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 13: Table S11. The primer sequences used in this study.
DOI: 10.6084/m9.figshare.13024479.v1
title: Additional file 13 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 13: Table S11. The primer sequences used in this study.
DOI: 10.6084/m9.figshare.13024494.v1
title: Additional file 3 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 3: Table S1. The total identified proteins by iTRAQ in MS and FS.
DOI: 10.6084/m9.figshare.13024497.v1
title: Additional file 4 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 4: Table S2. The total identified proteins by iTRAQ in ML and FL.
DOI: 10.6084/m9.figshare.13024476.v1
title: Additional file 12 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 12: Table S10. The significant KEGG enrichment analysis of the differentially enriched proteins in ML and FL.
DOI: 10.6084/m9.figshare.13024482.v1
title: Additional file 14 of iTRAQ-based comparative proteomic analysis of differences in the protein profiles of stems and leaves from two alfalfa genotypes

description: Additional file 14: Table S12. The raw data of qRT-PCR in stems.
DOI: 10.6084/m9.figshare.8841107
title: Additional file 4: of Microarray analysis of infectious bronchitis virus infection of chicken primary dendritic cells

description: The target gene of differentially expressed miRNAs in IBV-stimulated avian BMDCs and their GO and KEEG analysis. (XLS 223 kb)
DOI: 10.6084/m9.figshare.8841107.v1
title: Additional file 4: of Microarray analysis of infectious bronchitis virus infection of chicken primary dendritic cells

description: The target gene of differentially expressed miRNAs in IBV-stimulated avian BMDCs and their GO and KEEG analysis. (XLS 223 kb)
DOI: 10.6084/m9.figshare.14597450
title: The subantarctic lithospheric mantle

description: Major element compositions of olivine, clinopyroxene and spinbel and trace element contents of clinopyroxene
DOI: 10.6084/m9.figshare.7257431
title: MOESM10 of iTRAQ-based quantitative analysis of age-specific variations in salivary proteome of caries-susceptible individuals

description: Additional file 10. Category list of pathways involved by differentially expressed proteins in four comparison groups.
DOI: 10.6084/m9.figshare.7257431.v1
title: MOESM10 of iTRAQ-based quantitative analysis of age-specific variations in salivary proteome of caries-susceptible individuals

description: Additional file 10. Category list of pathways involved by differentially expressed proteins in four comparison groups.
DOI: 10.6084/m9.figshare.7257452
title: MOESM11 of iTRAQ-based quantitative analysis of age-specific variations in salivary proteome of caries-susceptible individuals

description: Additional file 11. Detailed information from the PPI analysis of target proteins.
DOI: 10.6084/m9.figshare.7257452.v1
title: MOESM11 of iTRAQ-based quantitative analysis of age-specific variations in salivary proteome of caries-susceptible individuals

description: Additional file 11. Detailed information from the PPI analysis of target proteins.
DOI: 10.6084/m9.figshare.7257473
title: MOESM12 of iTRAQ-based quantitative analysis of age-specific variations in salivary proteome of caries-susceptible individuals

description: Additional file 12. List of target proteins verified by MRM assay in each comparison group.
DOI: 10.6084/m9.figshare.7257473.v1
title: MOESM12 of iTRAQ-based quantitative analysis of age-specific variations in salivary proteome of caries-susceptible individuals

description: Additional file 12. List of target proteins verified by MRM assay in each comparison group.
DOI: 10.6084/m9.figshare.19316121
title: Genome-wide analysis of the GRF gene family and their expression profiling in peach (<i>Prunus persica</i>)

description: Growth-regulating factors (GRFs) are plant-speciﬁc transcription factors with vital roles in multiple biological processes. Although GRFs have been identified in various plant species, a comprehensive analysis of <i>GRF</i> genes in peach (<i>Prunus persica</i>) has not yet been reported. In this study, 10 <i>PpGRF</i> genes distributed on 6 chromosomes were identified in peach genome and their properties were analyzed systematically. Expression pattern analysis suggested that most <i>PpGRFs</i> were preferentially expressed in young tissues. Multiple types of cis-elements were observed in PpGRF promoters, and <i>PpGRFs</i> positively respond to ultraviolet B-rays (UVB) and gibberellin (GA) treatments at the transcriptional level. Also, the content of gibberellic acid 3 (GA<sub>3</sub>) and indole-3-acetic acid (IAA) changed significantly after UVB irradiation. <i>PpGRF 3</i>, <i>4</i>, <i>5</i>, <i>6</i>, <i>7</i>, <i>9</i> and <i>10</i> positive responses to UVB and GA<sub>3</sub> signals. The evolutionary patterns and expression profiles of PpGRFs detected in this study increase understanding of the important roles in peach.
DOI: 10.6084/m9.figshare.19316121.v2
title: Genome-wide analysis of the GRF gene family and their expression profiling in peach (<i>Prunus persica</i>)

description: Growth-regulating factors (GRFs) are plant-speciﬁc transcription factors with vital roles in multiple biological processes. Although GRFs have been identified in various plant species, a comprehensive analysis of <i>GRF</i> genes in peach (<i>Prunus persica</i>) has not yet been reported. In this study, 10 <i>PpGRF</i> genes distributed on 6 chromosomes were identified in peach genome and their properties were analyzed systematically. Expression pattern analysis suggested that most <i>PpGRFs</i> were preferentially expressed in young tissues. Multiple types of cis-elements were observed in PpGRF promoters, and <i>PpGRFs</i> positively respond to ultraviolet B-rays (UVB) and gibberellin (GA) treatments at the transcriptional level. Also, the content of gibberellic acid 3 (GA<sub>3</sub>) and indole-3-acetic acid (IAA) changed significantly after UVB irradiation. <i>PpGRF 3</i>, <i>4</i>, <i>5</i>, <i>6</i>, <i>7</i>, <i>9</i> and <i>10</i> positive responses to UVB and GA<sub>3</sub> signals. The evolutionary patterns and expression profiles of PpGRFs detected in this study increase understanding of the important roles in peach.
DOI: 10.6084/m9.figshare.19316121.v1
title: Genome-wide analysis of the GRF gene family their expression profiling in peach (<i>Prunus persica</i>)

description: Growth-regulating factors (GRFs) are plant-speciﬁc transcription factors with vital roles in multiple biological processes. Although GRFs have been identified in various plant species, a comprehensive analysis of <i>GRF</i> genes in peach (<i>Prunus persica</i>) has not yet been reported. In this study, 10 <i>PpGRF</i> genes distributed on 6 chromosomes were identified in peach genome and their properties were analyzed systematically. Expression pattern analysis suggested that most <i>PpGRFs</i> were preferentially expressed in young tissues. Multiple types of cis-elements were observed in PpGRF promoters, and <i>PpGRFs</i> positively respond to ultraviolet B-rays (UVB) and gibberellin (GA) treatments at the transcriptional level. Also, the content of gibberellic acid 3 (GA<sub>3</sub>) and indole-3-acetic acid (IAA) changed significantly after UVB irradiation. <i>PpGRF 3</i>, <i>4</i>, <i>5</i>, <i>6</i>, <i>7</i>, <i>9</i> and <i>10</i> positive responses to UVB and GA<sub>3</sub> signals. The evolutionary patterns and expression profiles of PpGRFs detected in this study increase understanding of the important roles in peach.