cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28883060.v1
title: Code and data for: Variability, drivers, and utility of genetic diversity-area relationships in terrestrial vertebrates

description: Code and data for: Genetic diversity-area relationships are governed by population structureAuthors: Chloé Schmidt, Sean Hoban, Deborah M. Leigh, Walter Jetz, Colin J. GarrowayCode also available on Github: https://github.com/chloewsch/GDAR<br>File descriptions:1. R scripts: Scripts for data compilation and analysis (in order of use)<br>2. GDAR_env_figs.Rdata: R environment object including data needed to run scripts3. genotypes_files_FS.rds: genotype data saved as a list of genind objects (adegenet package)4. zfst_long_se.rds: a saved R object produced in script 1.<br>5. mammal_traits.csv: trait data for species included in this analysisColumn descriptions:filename: name of file containing genotypesspecies: Genus_speciesindividuals: number of individuals samplednum_sites: number of sites (locations) sampledglobal_fst: estimated global FST (population differentiation)zAC, zAR, zGD: estimated scaling values (z) for allele count (AC), allelic richness (AR), and gene diversity (GD)zACse, zARse, zGDse: standard errors for scaling values (z)class, uid, family, genus, order: other taxonomic informationmass_g, log_mass: species mass in grams, and log10 of this valuerange_area_km2, log_range: species range area in square kilometers, and log10 of this valuemean_HR_km2, log_HR: species mean home range area in square kilometers, and log10 of this valuearea_km2, log_area: area of sample extent (per study) in square kilometers, and log10 of this value<br>6. mpg_test_data.csv: trait data for mammal species from the MacroPopGen database (https://figshare.com/articles/dataset/MacroPopGen_Database_Geo-referenced_population-specific_microsatellite_data_across_the_American_continents/7207514/3?file=23392853)Column descriptions:species_ref: species binomial and MacroPopGen reference IDspecies: Genus_speciesorder, family, genus: other taxonomic informationRefID: MacroPopGen reference IDglobal_fst: global FST value per study/species combinationmass_g, log_mass: species mass in grams, and log10 of this valuerange_area_km2, log_range: species range area in square kilometers, and log10 of this valuemean_HR_km2, log_HR: species mean home range area in square kilometers, and log10 of this valuearea_km2, log_area: area of sample extent (per study) in square kilometers, and log10 of this value
DOI: 10.5281/zenodo.17867606
title: Repository for the PCF-SiM paper
title: Exploiting pair correlation function to describe biological tissue structure

description: This repository contains all the annotated datasets used in the paper "Exploiting pair correlation function to describe biological tissue structure". These files can be analysed using the PCFSiM package (https://github.com/BOSTLAB/PCFSiM) and the GitHub associated to the publication (https://github.com/BOSTLAB/PCFSiM-Paper).
DOI: 10.5281/zenodo.17867607
title: Repository for the PCF-SiM paper
title: Exploiting pair correlation function to describe biological tissue structure

description: This repository contains all the annotated datasets used in the paper "Exploiting pair correlation function to describe biological tissue structure". These files can be analysed using the PCFSiM package (https://github.com/BOSTLAB/PCFSiM) and the GitHub associated to the publication (https://github.com/BOSTLAB/PCFSiM-Paper).
DOI: 10.60507/fk2/fe09xj
title: Code of "Expected Effects of a Global Transformation of Agricultural Pest Management"

description: The here presented dataset provides code to replicate the analysis of Möhring et al. (2025) on expected effects of a global transformation of agricultural pest management based on an online survey conducted in 2022 with 517 senior scientific experts from key agricultural regions and disciplines. The assessment framework covers 24 indicators in the economic, human health, food security, social, and environmental domains. It is anonymized. It further contains information on respondent characteristics and co-variates for the socio-economic and environmental state of the assessed regions from literature. The data was collected in 2022 with an online survey in Limesurvey. The data was collected to assess expected effects of a global transformation to pest management with zero or minimal pesticide use. This is a pressing challenge in global agriculture and relates to national and global policy targets on pesticide reduction. 

The code in R can be used to replicate results of the analysis.
description: R, 4.2.1
DOI: 10.60507/fk2/fe09xj/4oiohe
title: cords_local_experts.csv

description: Auxiliary dataset for replication 1
DOI: 10.60507/fk2/fe09xj/inytlc
title: spam2020V1r0_global_H_TA.csv

description: Auxiliary dataset for replication 2
DOI: 10.60507/fk2/fe09xj/e8ohdp
title: Replication_Mohring et al_Code_R.txt

description: Code for replication of Möhring et al. (2025) in R
DOI: 10.60507/fk2/fe09xj/gg4tg5
title: Readme_Moehring_Code_Eff-Glob-Trans-Agricult-Pest-Man.txt

description: Readme
DOI: 10.60507/fk2/fe09xj/m2c0vb
title: Codebook_cords_local_experts.csv

description: Codebook auxiliary dataset for replication 1
DOI: 10.60507/fk2/fe09xj/lszlrm
title: Codebook_spam2020V1r0_global_H_TA.csv

description: Codebook auxiliary dataset for replication 2
DOI: 10.15468/dl.2bf8wz
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Bursatella leachii"
 ]
}

 The dataset's 2 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040676-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60507/fk2/xwss9w
title: Dataset for "Expected Effects of a Global Transformation of Agricultural Pest Management"

description: The here presented dataset provides information on expected effects of a global transformation of agricultural pest management from an online survey conducted in 2022 with 517 senior scientific experts from key agricultural regions and disciplines. The assessment framework covers 24 indicators in the economic, human health, food security, social, and environmental domains. It is anonymized. It further contains information on respondent characteristics and co-variates for the socio-economic and environmental state of the assessed regions from literature. The data was collected in 2022 with an online survey in Limesurvey.

The data was collected to assess expected effects of a global transformation to pest management with zero or minimal pesticide use. This is a pressing challenge in global agriculture and relates to national and global policy targets on pesticide reduction.
description: LimeSurvey Community Edition, 5.6.10+230313
DOI: 10.60507/fk2/xwss9w/elppqs
title: Mohring_etal_data_replication.csv

description: Dataset
DOI: 10.60507/fk2/xwss9w/4sklgw
title: Readme_Moehring_Eff-Glob-Trans-Agricult-Pest-Man.txt

description: Readme
DOI: 10.60507/fk2/xwss9w/yjtg2j
title: Codebook_Moehring_Eff-Glob-Trans-Agricult-Pest-Man.csv

description: Codebook_dataset
DOI: 10.17026/ar/dgbd3m
title: PAN-00087255 - kidney shaped single looped buckle

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00087255&lt;/p&gt;
description: Modified: 2025-10-28T11:20:28+01:00
DOI: 10.5281/zenodo.17867324
title: Multi-temporal Land Cover and Trajectory Dataset for the Mamminasata Urban Watersheds (Indonesia), 2000–2024

description: This dataset contains the spatial data used to analyze land cover change trajectories and hydrological response in the urban watersheds of the Mamminasata region, South Sulawesi, Indonesia. Multi-temporal land cover maps for 2000, 2004, 2009, 2014, 2018, and 2024 were derived from Landsat surface reflectance imagery using a Random Forest classifier at 30 m spatial resolution. Each pixel was assigned to one of four trajectory classes (stable, irreversible, gradual, cyclic) to represent the history of land cover transformation over the 2000–2024 period.

The repository includes land cover maps and trajectory maps delineated by watershed boundaries that influence the Mamminasata metropolitan area. Data are organized by watershed and year to support reproducible analysis and reuse in studies of hydrology, land cover change, and flood risk in tropical urban environments.
DOI: 10.5281/zenodo.17867323
title: Multi-temporal Land Cover and Trajectory Dataset for the Mamminasata Urban Watersheds (Indonesia), 2000–2024

description: This dataset contains the spatial data used to analyze land cover change trajectories and hydrological response in the urban watersheds of the Mamminasata region, South Sulawesi, Indonesia. Multi-temporal land cover maps for 2000, 2004, 2009, 2014, 2018, and 2024 were derived from Landsat surface reflectance imagery using a Random Forest classifier at 30 m spatial resolution. Each pixel was assigned to one of four trajectory classes (stable, irreversible, gradual, cyclic) to represent the history of land cover transformation over the 2000–2024 period.

The repository includes land cover maps and trajectory maps delineated by watershed boundaries that influence the Mamminasata metropolitan area. Data are organized by watershed and year to support reproducible analysis and reuse in studies of hydrology, land cover change, and flood risk in tropical urban environments.
DOI: 10.15468/dl.zjss6w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.894 1.110184, 100.823724 1.104616, 100.755179 1.08805, 100.690054 1.060894, 100.629952 1.023816, 100.576353 0.97773, 100.530578 0.923772, 100.493753 0.863269, 100.466785 0.797713, 100.450337 0.7287169999999999, 100.444813 0.65798, 100.450349 0.587244, 100.466809 0.51825, 100.493786 0.452698, 100.530617 0.392201, 100.576394 0.338249, 100.62999 0.292169, 100.690086 0.255097, 100.755203 0.227946, 100.823736 0.211382, 100.894 0.205816, 100.964264 0.211382, 101.032797 0.227946, 101.097914 0.255097, 101.15801 0.292169, 101.211606 0.338249, 101.257383 0.392201, 101.294214 0.452698, 101.321191 0.51825, 101.337651 0.587244, 101.343187 0.65798, 101.337663 0.7287169999999999, 101.321215 0.797713, 101.294247 0.863269, 101.257422 0.923772, 101.211647 0.97773, 101.158048 1.023816, 101.097946 1.060894, 101.032821 1.08805, 100.964276 1.104616, 100.894 1.110184))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040700-251120083545085/datasets/export for details.
DOI: 10.15468/dl.ad7ncw
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coralliodrilus tyndariensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040698-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/xitefj
title: PAN-00182021 - bar mount group 2

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00182021&lt;/p&gt;
description: Modified: 2025-11-03T15:02:24+01:00
DOI: 10.5281/zenodo.14771013
title: The Finnish Principal Barometer

description: The Principal barometer is an ongoing follow-up study of principals, deputy principals, vice-principals, and school leaders of primary education or upper secondary education in Finland. 









The principal barometer is an extensive longitudinal study aimed at investigating the occupational well-being of Finnish principals. The research is carried out in co-operation between researchers from the University of Helsinki and Suomen Rehtorit ry (Association of Finnish school principals).  Our primary goal is to investigate and follow the well-being of Finnish principals and compare with international data as well as other industries and professions. This project is adjacent to the international Educator Health and Wellbeing study, led by Professor Philip Riley from Australia, and involves collaboration with Australian Catholic University’s Institute for Positive Psychology and Education.

We utilise a comprehensive questionnaire to examine the principals' work situation, well-being, resources, and management practices. Additionally, we collect physiological data, such as HRV (heart rate variability) using the Firstbeat device, which tracks rest time, working time, and exercise. Our focus areas include recovery, job crafting, servant leadership, engagement, and burnout.

More information about the Principal Barometer here.

Note: the survey is distributed in Finnish and Swedish, some of the material are translated to english. This Zenodo record will be updated periodically. Inquiries for more information, possible collaboration and use of the dataset are welcomed.

Files:Raportti Rehtoribarometri 2024.pdf     - contains a report on the results of the 2024 surveyThe Finnish Principal Barometer (2019-2024).pdf    - contains a short description of the project and datasetrehtoribarometri_measures_longitudinal_20250508.xlsx     - contains an overview of the measures included across the waves
DOI: 10.5281/zenodo.13643801
title: The Finnish Principal Barometer

description: The Principal barometer is an ongoing follow-up study of principals, deputy principals, vice-principals, and school leaders of primary education or upper secondary education in Finland. 









The principal barometer is an extensive longitudinal study aimed at investigating the occupational well-being of Finnish principals. The research is carried out in co-operation between researchers from the University of Helsinki and Suomen Rehtorit ry (Association of Finnish school principals).  Our primary goal is to investigate and follow the well-being of Finnish principals and compare with international data as well as other industries and professions. This project is adjacent to the international Educator Health and Wellbeing study, led by Professor Philip Riley from Australia, and involves collaboration with Australian Catholic University’s Institute for Positive Psychology and Education.

We utilise a comprehensive questionnaire to examine the principals' work situation, well-being, resources, and management practices. Additionally, we collect physiological data, such as HRV (heart rate variability) using the Firstbeat device, which tracks rest time, working time, and exercise. Our focus areas include recovery, job crafting, servant leadership, engagement, and burnout.

More information about the Principal Barometer here.

Note: the survey is distributed in Finnish and Swedish, some of the material are translated to english. This Zenodo record will be updated periodically. Inquiries for more information, possible collaboration and use of the dataset are welcomed.

Files:Raportti Rehtoribarometri 2024.pdf     - contains a report on the results of the 2024 surveyThe Finnish Principal Barometer (2019-2024).pdf    - contains a short description of the project and datasetrehtoribarometri_measures_longitudinal_20250508.xlsx     - contains an overview of the measures included across the waves
DOI: 10.6084/m9.figshare.30608489
title: Immunopeptidomes isolated from 4 B-cell lines homozygous for HLA-C*06:02

description: HLA-C*06:02-associated peptides from four <i>HLA-C*06:02</i>-homozygous B cell lines (GM20771, GM11930, HG00131, HG00142) were analyzed by Liquid Chromatography-Tandem Mass Spectrometry (LC–MS/MS). MS data were acquired in data-dependent mode (DDA). Raw data was processed with PEAKS X+ for <i>de novo</i> sequencing. Peptide candidates obtained by <i>de novo</i> sequencing were matched against the 6-frame translated genome and the 3-frame translated human reference transcriptome with Peptide-PRISM.Results were filtered to 10% (<b>HLA_peptides_4_B_cell_lines_FDR_0.1.xlsx</b>) or 1% FDR (<b>HLA_peptides_4_B_cell_lines_FDR_0.01.xlsx</b>).
DOI: 10.6084/m9.figshare.30608489.v1
title: Immunopeptidomes isolated from 4 B-cell lines homozygous for HLA-C*06:02

description: HLA-C*06:02-associated peptides from four <i>HLA-C*06:02</i>-homozygous B cell lines (GM20771, GM11930, HG00131, HG00142) were analyzed by Liquid Chromatography-Tandem Mass Spectrometry (LC–MS/MS). MS data were acquired in data-dependent mode (DDA). Raw data was processed with PEAKS X+ for <i>de novo</i> sequencing. Peptide candidates obtained by <i>de novo</i> sequencing were matched against the 6-frame translated genome and the 3-frame translated human reference transcriptome with Peptide-PRISM.Results were filtered to 10% (<b>HLA_peptides_4_B_cell_lines_FDR_0.1.xlsx</b>) or 1% FDR (<b>HLA_peptides_4_B_cell_lines_FDR_0.01.xlsx</b>).
DOI: 10.15468/dl.embqd7
title: Occurrence Download

description: A dataset containing 61216 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia [GBIF Backbone Taxonomy])",
 "Country is one of (Cuba, Haiti, Dominican Republic, Puerto Rico, Jamaica, Bahamas, Turks and Caicos Islands, Virgin Islands (British), Virgin Islands (U.S.), Antigua and Barbuda, Cayman Islands, Bonaire, Sint Eustatius and Saba, Saint Martin (French part), Sint Maarten (Dutch part), Saint Kitts and Nevis, Saint Barthélemy, Barbados, Montserrat, Guadeloupe, Martinique, Dominica, Saint Lucia, Grenada, Saint Vincent and the Grenadines)"
 ]
 }
 ]
}

 The dataset includes 61216 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040658-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17704984
title: Simulation (static & dynamic) and experimental (dynamic) result raw data for the Shock-absorber prototype with Intrusion-extrusion cycle behaviours

description: The uploaded Excel data are raw data obtained from the design model and simulation outputs, alongside the corresponding experimental results.

They were used to generate the validation figures in our published paper (Sci Rep 15, 39927 (2025)).
DOI: 10.5281/zenodo.17704983
title: Simulation (static & dynamic) and experimental (dynamic) result raw data for the Shock-absorber prototype with Intrusion-extrusion cycle behaviours

description: The uploaded Excel data are raw data obtained from the design model and simulation outputs, alongside the corresponding experimental results.

They were used to generate the validation figures in our published paper (Sci Rep 15, 39927 (2025)).
DOI: 10.17026/ar/eu7igp
title: PAN-00178830 - weapon suspension coupling buckle (Late Medieval/Modern belt)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00178830&lt;/p&gt;
description: Modified: 2025-10-23T09:16:40+02:00
DOI: 10.5281/zenodo.17847396
title: Emulated and simulated AMOC strengths at 26N for journal paper "Emulating the strength of modelled Atlantic Meridional Overturning Circulation using perturbed parameter ensemble data"

description: predicted_amoc.csv: Data of emulated AMOC strengths at 26N as described in journal paper "Emulating the strength of modelled Atlantic Meridional Overturning Circulation using perturbed parameter ensemble data". Realizations that were filtered and selected for the new "extended" PPE are annotated with "Yes" in the "selected for extended PPE" column. Note that realization 1100445 was initially selected for the extended PPE but later removed as it failed during a coupled run in a later phase due to instability.

amoc_simulated_orig_coupled_ppe.nc: Timeseries data from the original coupled PPE of simulated AMOC at 26N in the calibration phase as described in the above paper.

amoc_simulated_extended_coupled_ppe.nc: Timeseries data from the extended coupled PPE of simulated AMOC at 26N in the calibration phase as described in the above paper.
DOI: 10.15468/dl.zy9yqu
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hygrophila micrantha",
 "Continent is Africa"
 ]
}

 The dataset includes 539 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040701-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17847395
title: Emulated and simulated AMOC strengths at 26N for journal paper "Emulating the strength of modelled Atlantic Meridional Overturning Circulation using perturbed parameter ensemble data"

description: predicted_amoc.csv: Data of emulated AMOC strengths at 26N as described in journal paper "Emulating the strength of modelled Atlantic Meridional Overturning Circulation using perturbed parameter ensemble data". Realizations that were filtered and selected for the new "extended" PPE are annotated with "Yes" in the "selected for extended PPE" column. Note that realization 1100445 was initially selected for the extended PPE but later removed as it failed during a coupled run in a later phase due to instability.

amoc_simulated_orig_coupled_ppe.nc: Timeseries data from the original coupled PPE of simulated AMOC at 26N in the calibration phase as described in the above paper.

amoc_simulated_extended_coupled_ppe.nc: Timeseries data from the extended coupled PPE of simulated AMOC at 26N in the calibration phase as described in the above paper.
DOI: 10.25934/pr00011925.0
title: Available datapackage for study 'A Pilot Study of a DNAJB1-PRKACA Fusion Kinase Peptide Vaccine Combined With Nivolumab and Ipilimumab for Patients With Fibrolamellar Hepatocellular Carcinoma'

description: The primary objective of the trial is the safety and tolerability of administering a vaccine targeting the DNAJB1-PRKACA fusion kinase, in combination with nivolumab and ipilimumab in patients with unresectable or metastatic FLC and with non-FLC solid tumors and to assess the T-cell response.
DOI: 10.15468/dl.gcfun6
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Xeno-canto - Bird sounds from around the world, Naturalis Biodiversity Center (NL) - Aves, Collection Aves (bird skins) SMF, Coleção de Aves do Museu Nacional / UFRJ, Vertebrate Zoology Division - Ornithology, Yale Peabody Museum)",
 "OccurrenceStatus is Present",
 "TaxonKey is Heliactin"
 ]
}

 The dataset includes 50 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040703-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tmeav
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Manis pentadactyla"
 ]
}

 The dataset includes 100 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040702-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.