cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8328078
title: Phylogeny and disease links of a widespread and ancient gut phage lineage

description: Viruses are a core component of the human microbiome, impacting health and disease through interactions with gut bacteria1 and the immune system2. Most viruses in the human microbiome are bacteriophages, which exclusively infect bacteria. Individual gut bacteriophages can affect bacterial bile acid deconjugation3, and can alter their infection strategy based on dietary content4. Up to recently, most studies of the gut virome have focused on low taxonomic scales (e.g., viral operational taxonomic units), hampering population-level analyses. We previously identified the expansive and widespread Candidatus Heliusviridae bacteriophage family in a cohort with inhabitants of Amsterdam, the Netherlands. Here, we study their biodiversity and evolution in a wide variety of human populations. With a detailed phylogeny based on sequences from six viral genome databases, we now propose the Candidatus order Heliusvirales to accommodate these viruses. We identify Ca. Heliusvirales viruses in 80% of 5,441 individuals across 39 studies, and also in thirteen out of sixteen analyzed metagenomes from ancient humans that lived in Europe and North America between 1,000 and 5,000 years ago. We show that a large Ca. Heliusvirales lineage has diversified starting with human dispersion across the globe some 50,000 years ago. Ancient peoples and modern hunter-gatherers further have distinct Ca. Heliusvirales populations that are characterized by lower richness than modern urbanized people. Within urbanized people, those suffering from type 1 and type 2 diabetes, as well as inflammatory bowel disease, have higher Ca. Heliusvirales richness than healthy controls. We thus conclude that these ancient core members of the human gut virome have thrived with increasingly westernized lifestyles of the human population.
DOI: 10.15468/dl.atrphg
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus lacrimans L.A.S.Johnson & K.D.Hill"
 ]
}

 The dataset includes 150 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021854-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8328077
title: Phylogeny and disease links of a widespread and ancient gut phage lineage

description: Viruses are a core component of the human microbiome, impacting health and disease through interactions with gut bacteria1 and the immune system2. Most viruses in the human microbiome are bacteriophages, which exclusively infect bacteria. Individual gut bacteriophages can affect bacterial bile acid deconjugation3, and can alter their infection strategy based on dietary content4. Up to recently, most studies of the gut virome have focused on low taxonomic scales (e.g., viral operational taxonomic units), hampering population-level analyses. We previously identified the expansive and widespread Candidatus Heliusviridae bacteriophage family in a cohort with inhabitants of Amsterdam, the Netherlands. Here, we study their biodiversity and evolution in a wide variety of human populations. With a detailed phylogeny based on sequences from six viral genome databases, we now propose the Candidatus order Heliusvirales to accommodate these viruses. We identify Ca. Heliusvirales viruses in 80% of 5,441 individuals across 39 studies, and also in thirteen out of sixteen analyzed metagenomes from ancient humans that lived in Europe and North America between 1,000 and 5,000 years ago. We show that a large Ca. Heliusvirales lineage has diversified starting with human dispersion across the globe some 50,000 years ago. Ancient peoples and modern hunter-gatherers further have distinct Ca. Heliusvirales populations that are characterized by lower richness than modern urbanized people. Within urbanized people, those suffering from type 1 and type 2 diabetes, as well as inflammatory bowel disease, have higher Ca. Heliusvirales richness than healthy controls. We thus conclude that these ancient core members of the human gut virome have thrived with increasingly westernized lifestyles of the human population.
DOI: 10.15468/dl.blhhfq
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031536-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lg6og4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022430-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufq3eg
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "TaxonKey is Elasmobranchii"
 ]
}

 The dataset includes 65 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0146140-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xka22d
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus verrucata Ladiges & Whiffin"
 ]
}

 The dataset includes 218 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021855-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpizhy
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022404-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z547yn
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eucalyptus pachyloma Benth."
 ]
}

 The dataset includes 293 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021870-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzsqmn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035051-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxpblu
title: Occurrence Download

description: A dataset containing 1011616058 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1011616058 records from 20838 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046326-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vs68ef
title: Occurrence Download

description: A dataset containing 253 records in GBIF matching the query:
SELECT DISTINCT
 countrycode
FROM
 occurrence

 The dataset's 253 records were derived from 77178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024095-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xz43m
title: Occurrence Download

description: A dataset containing 26949 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor"
 ]
}

 The dataset includes 26949 records from 444 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024120-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30562544.v2
title: Outer‑Nucleus Electron Space — A Gravitational Quantum Model in CRVD Framework Electron around the nucleus as a Quantization machine

description: This supplemental paper formalizes the gravitational‑quantum structure of the Outer‑Nucleus Electron Space in the 𝑄 CRVD Q CRVDself‑gravitating quantum fluid where macroscopic atomic stability emerges from the hydrostatic balance between the internal quantum pressure and the nuclear gravitational potential framework. It models the electron cloud as a continuous, self‑gravitating quantumfluid where macroscopic atomic stability emerges from the hydrostatic balance between the internal quantum pressure and the nuclear gravitational potential.
DOI: 10.6084/m9.figshare.30565802
title: De-identified clinical dataset for: Identification of Clinical Phenotypes and Prediction Model for High-Risk Phenotypes of Pediatric Community-Acquired Pneumonia Based on Unsupervised Machine Learning

description: This dataset contains the de-identified clinical data used in the manuscript "Identification of Clinical Phenotypes and Prediction Model for High-Risk Phenotypes of Pediatric Community-Acquired Pneumonia Based on Unsupervised Machine Learning".<br>Background: The study aimed to identify distinct clinical phenotypes in pediatric community-acquired pneumonia (CAP) patients and develop a prediction model for high-risk phenotypes using unsupervised machine learning.<br>Data Source: The data was retrospectively collected from electronic medical records of pediatric CAP patients who underwent bronchoalveolar lavage at two hospitals in Fujian Province, China.<br>Data Content: The dataset includes de-identified patient-level data on:- Demographic characteristics (e.g., age, gender)- Pathogen detection results (from BALF NGS, throat swab PCR, serology)- Inflammatory markers (WBC, NLR, CRP, PCT, LDH, D-dimer)- Imaging features- Clinical outcomes (length of hospital stay)- The assigned clinical phenotypes (MP-Dominant, Mixed-Infection, High-Inflammation) derived from k-prototypes clustering analysis.<br>Usage Notes: This dataset is sufficient to reproduce the clustering analysis and predictive modeling results reported in the associated manuscript. All personally identifiable information has been removed to protect patient privacy.<br><br>
DOI: 10.6084/m9.figshare.30565802.v1
title: De-identified clinical dataset for: Identification of Clinical Phenotypes and Prediction Model for High-Risk Phenotypes of Pediatric Community-Acquired Pneumonia Based on Unsupervised Machine Learning

description: This dataset contains the de-identified clinical data used in the manuscript "Identification of Clinical Phenotypes and Prediction Model for High-Risk Phenotypes of Pediatric Community-Acquired Pneumonia Based on Unsupervised Machine Learning".<br>Background: The study aimed to identify distinct clinical phenotypes in pediatric community-acquired pneumonia (CAP) patients and develop a prediction model for high-risk phenotypes using unsupervised machine learning.<br>Data Source: The data was retrospectively collected from electronic medical records of pediatric CAP patients who underwent bronchoalveolar lavage at two hospitals in Fujian Province, China.<br>Data Content: The dataset includes de-identified patient-level data on:- Demographic characteristics (e.g., age, gender)- Pathogen detection results (from BALF NGS, throat swab PCR, serology)- Inflammatory markers (WBC, NLR, CRP, PCT, LDH, D-dimer)- Imaging features- Clinical outcomes (length of hospital stay)- The assigned clinical phenotypes (MP-Dominant, Mixed-Infection, High-Inflammation) derived from k-prototypes clustering analysis.<br>Usage Notes: This dataset is sufficient to reproduce the clustering analysis and predictive modeling results reported in the associated manuscript. All personally identifiable information has been removed to protect patient privacy.<br><br>
DOI: 10.6084/m9.figshare.30201280
title: Source data for tables

description: Intestinal cell composition in human ileal enteroids treated with ETEC LT toxin.
DOI: 10.6084/m9.figshare.30201280.v1
title: Source data for tables

description: Intestinal cell composition in human ileal enteroids treated with ETEC LT toxin.
DOI: 10.15468/dl.3yuwqh
title: Occurrence Download

description: A dataset containing 49074 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotoneaster integerrimus"
 ]
}

 The dataset includes 49074 records from 438 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021647-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30307015
title: R-script for single-cell RNA-seq data analysis

description: R script for single-cell RNA-seq data analysis. The code includes steps for quality control, normalization using SCTransform, dimensional reduction (PCA and UMAP), clustering, differential gene expression analysis, and visualization of marker genes. Integration workflows were performed to combine control and LT-treated organoid datasets, followed by annotation of epithelial subtypes based on established marker genes. Additional scripts generate figures such as UMAP projections, heatmaps, dot plots, and violin plots.
DOI: 10.6084/m9.figshare.30307015.v1
title: R-script for single-cell RNA-seq data analysis

description: R script for single-cell RNA-seq data analysis. The code includes steps for quality control, normalization using SCTransform, dimensional reduction (PCA and UMAP), clustering, differential gene expression analysis, and visualization of marker genes. Integration workflows were performed to combine control and LT-treated organoid datasets, followed by annotation of epithelial subtypes based on established marker genes. Additional scripts generate figures such as UMAP projections, heatmaps, dot plots, and violin plots.
DOI: 10.15468/dl.4j5mmy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.84278 1.64236,-77.76198 0.62514,-76.29973 0.30726,-74.86926 -0.3285,-73.40701 -1.47287,-73.05734 -2.14042,-71.72224 -2.33115,-71.11827 -2.204,-70.19641 -2.71261,-70.60966 -3.7934,-70.16463 -3.69804,-70.00569 -4.30201,-69.49708 -1.1232,-70.00569 -0.23314,-69.87853 0.68872,-69.11562 0.75229,-69.49708 1.13375,-70.03747 1.13375,-70.06926 1.73773,-68.19376 1.57878,-67.49443 2.05561,-67.08118 1.2609,-66.98582 2.08739,-67.52621 2.78673,-68.19376 2.46885,-78.84278 1.64236))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Puma concolor concolor"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021651-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17552824
title: Dataset for article "Minute-scale incident mitigation in urban networks via threshold allocation and AI planning a three-stage corridor framework"
DOI: 10.5281/zenodo.17552825
title: Dataset for article "Minute-scale incident mitigation in urban networks via threshold allocation and AI planning a three-stage corridor framework"
DOI: 10.15468/dl.p2k7ra
title: Occurrence Download

description: A dataset containing 170340 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Rhamnus glandulosa, Corallocarpus dissectus, Thlaspi kochianum, Centaurea aetolica, Centaurea alba, Petasites doerfleri, Vittadinia humerata, Erodium nervulosum, Globularia orientalis, Scutellaria goulimyi, Eleocharis pachycarpa, Eleocharis philippinensis, Eleocharis yecorensis, Bulbine diphylla, Babiana virginea, Asclepias cryptoceras, Lumnitzera racemosa, Erigeron palosverdensis, Styphelia longifolia, Adesmia conferta, Dalea albiflora, Drosanthemum dejagerae, Hypericum calycinum, Rhamnus lemaniana, Centaurea peucedanifolia, Centaurea homoeosceros, Centaurea mayeri, Centaurea micrantha, Centaurea montana, Centaurea ossaea, Centaurea soriana, Gnaphalium stewartii, Boerhavia albiflora, Cichorium pumilum, Erodium amanum, Gaultheria glaucifolia, Scutellaria tuberosa, Gladiolus guthriei, Gladiolus martleyi, Asclepias involucrata, Hypericum peshmenii, Hypericum saturejifolium, Hypericum trichocaulon, Hypericum venustum, Hypericum wilmsii, Scutellaria californica, Selago pachypoda, Selago polystachya, Selago foliosa, Selago cinerea, Selago micradenia, Adesmia pedicellata, Centaurea gymnocarpa, Dalea lumholtzii, Dalea mollis, Hypericum afrum, Liparia vestita, Liparia racemosa, Centaurea pinnata, Centaurea regia, Suaeda pruinosa, Centaurea huljakii, Centaurea kizildaghensis, Centaurea spinosociliata, Arctotis aspera, Selago lilacina, Metalasia compacta, Erigeron andicola, Metalasia capitata, Erodium microphyllum, Erodium paui, Goodyera oblongifolia, Conostylis laxiflora, Conostylis lepidospermoides, Conostylis micrantha, Conostylis seorsiflora, Hypericum asperulum, Lunaria rediviva, Nigella hispanica, Blepharis hirtinervia, Centaurea ambigua, Centaurea cariensiformis, Selago dolosa, Centaurea nemecii, Eutaxia leptophylla, Eleocharis bonariensis, Eleocharis parishii, Bulbine alata, Babiana sinuata, Asclepias cultriformis, Centaurea grabowskiana, Styphelia echinulata, Styphelia carolineae, Adesmia corymbosa, Adesmia erinacea, Drosanthemum chrysum, Drosanthemum leipoldtii, Hypericum icaricum, Centaurea chrysantha, Centaurea dichroantha)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 170340 records from 1024 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021630-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15863146
title: Dataset of "Optimized Thermal Treatment of Lithium-Ion Battery Components as a Basis for Sustainable Pyrometallurgy"

description: This paper describes an optimized low-temperature pyrometallurgical pre-treatment process for lithium-ion battery recycling. It identifies 500 °C as the ideal temperature for complete organic removal, preserving valuable materials like NMC cathodes, while reducing energy consumption and hazardous emissions. The work provides a practical, scalable, and cost-effective strategy to enhance battery recycling and support a circular economy for critical materials.
DOI: 10.5281/zenodo.15863147
title: Dataset of "Optimized Thermal Treatment of Lithium-Ion Battery Components as a Basis for Sustainable Pyrometallurgy"

description: This paper describes an optimized low-temperature pyrometallurgical pre-treatment process for lithium-ion battery recycling. It identifies 500 °C as the ideal temperature for complete organic removal, preserving valuable materials like NMC cathodes, while reducing energy consumption and hazardous emissions. The work provides a practical, scalable, and cost-effective strategy to enhance battery recycling and support a circular economy for critical materials.
DOI: 10.17909/m9xt-6908
title: BlackTHUNDER UNCOVER20466

description: JWST/NIRSpec IFU R100 and R2700 data
DOI: 10.15468/dl.vba6q2
title: Occurrence Download

description: A dataset containing 3605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.59298 45.78045,3.05193 45.78045,3.05193 47.37615,0.59298 47.37615,0.59298 45.78045))",
 "TaxonKey is Pieris brassicae"
 ]
}

 The dataset includes 3605 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021653-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/iw73uu/gwsnm1
title: KAN_B_hour.nc

description: Uploaded with pyDataverse 2023-01-13 16:40
DOI: 10.22008/fk2/iw73uu/kfgbt8
title: KAN_B_day.nc

description: Uploaded with pyDataverse 2023-01-13 16:42
DOI: 10.22008/fk2/iw73uu/vadotw
title: QAS_U_month.csv

description: Uploaded with pyDataverse 2023-01-13 16:43
DOI: 10.22008/fk2/iw73uu/bepnxi
title: QAS_U_hour.nc

description: Uploaded with pyDataverse 2023-01-13 16:43
DOI: 10.22008/fk2/iw73uu/vur8jp
title: QAS_U_month.nc

description: Uploaded with pyDataverse 2023-01-13 16:45
DOI: 10.22008/fk2/iw73uu/hs7npm
title: QAS_U_day.nc

description: Uploaded with pyDataverse 2023-01-13 16:45
DOI: 10.22008/fk2/iw73uu/ae5ywa
title: QAS_U_hour.csv

description: Uploaded with pyDataverse 2023-01-13 16:45
DOI: 10.22008/fk2/iw73uu/3a5848
title: QAS_U_day.csv

description: Uploaded with pyDataverse 2023-01-13 16:47
DOI: 10.22008/fk2/iw73uu/o8nsgx
title: NUK_Uv3_day.nc

description: Uploaded with pyDataverse 2023-01-13 16:47
DOI: 10.22008/fk2/iw73uu/vu8djg
title: NUK_Uv3_month.csv

description: Uploaded with pyDataverse 2023-01-13 16:47
DOI: 10.22008/fk2/iw73uu/ogek4q
title: NUK_Uv3_month.nc

description: Uploaded with pyDataverse 2023-01-13 16:47
DOI: 10.22008/fk2/iw73uu/a3dlwm
title: NUK_Uv3_hour.nc

description: Uploaded with pyDataverse 2023-01-13 16:47
DOI: 10.15468/dl.jsjb4p
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromopsis ramosa)",
 "Country is one of (Norway)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1986",
 "Year is less than or equal to 2025",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 }
 ]
}

 The dataset includes 135 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024876-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/iw73uu/0vxb7e
title: NUK_Uv3_hour.csv

description: Uploaded with pyDataverse 2023-01-13 16:48
DOI: 10.22008/fk2/iw73uu/yjagoe
title: NUK_Uv3_day.csv

description: Uploaded with pyDataverse 2023-01-13 16:47
DOI: 10.22008/fk2/iw73uu/uylvxl
title: KAN_M_day.nc

description: Uploaded with pyDataverse 2023-01-13 16:48
DOI: 10.22008/fk2/iw73uu/zs8fs4
title: KAN_M_hour.csv

description: Uploaded with pyDataverse 2023-01-13 16:48
DOI: 10.22008/fk2/iw73uu/sutzxe
title: KAN_M_day.csv

description: Uploaded with pyDataverse 2023-01-13 16:49