cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17297477.v1
title: SAC 2022 Dataset

description: This is the dataset that accompanies the SAC 2022 paper titled: "Security Risks of Porting C Programs to WebAssembly".<br>It consists of the source files, native binaries, and WebAssembly binaries discussed in the paper.<br>
DOI: 10.17632/6yrdmwydzj
title: Supplement for "Delgocitinib ointment in pediatric patients with atopic dermatitis: a phase 3, randomized, double-blind, vehicle-controlled study and a subsequent open-label, long-term study"

description: Supplementary Information and Results - Nakagawa H, et al. Delgocitinib ointment in pediatric patients with atopic dermatitis: a phase 3, randomized, double-blind, vehicle-controlled study and a subsequent open-label, long-term study.
Change in Version 2:
- Correction of the values of "Expose duration" in Supplementary Table I
DOI: 10.17632/m92kjz7tm8
title: Data to Model the Effect of Telecommunication Perceived Service Quality and Perceived Value on the Degree of User Satisfaction and e-WOM: Context of North Cyprus Telecommunications Users

description: The purpose of this dataset is to investigate a comprehensive model of user satisfaction and electronic word-of-mouth (e-WOM). The data was collected through a self-administered questionnaire at Girne American University in the Turkish Republic of North Cyprus (TRNC). The dataset was empirically evaluated using a survey of 500 respondents about their perceptions of the service provided by the mobile telecom operator.
DOI: 10.6084/m9.figshare.1574091.v1
title: IIT dataset

description: Image sequences and the ground truth file used to compare insect-inspired tracker with the state-of-the-art engineering models.
DOI: 10.6084/m9.figshare.24654309.v4
title: Commercial Boundary

description: Used codes and base data to measure commercial boundaries in the 69 metropolitan areas in North America. There is also the measured commercial boundary. We updated some codes and added address and a commercial score of boundaries
DOI: 10.15468/dl.2j7vc4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagamichthys schnakenbecki (Krefft, 1953)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 19.8496,26.9648 19.8496,26.9648 10.8496,35.9648 10.8496,35.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013192-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.17304239.v2
title: observation_for_validation.xlsx

description: The “observation_for_validation.xlsx” file includes the time series of SST (℃), potential density (kg/m<sup>3</sup>) for surface and bottom layer in SM19 station, SLA (cm) during the period 1994–2018.
DOI: 10.6084/m9.figshare.28926920.v3
title: a novel duplication mutation in the ENG gene

description: Hereditary hemorrhagic telangiectasia (HHT), also known as Rendu-Osler-Weber syndrome, is an autosomal dominant disorder characterized by arteriovenous malformations (AVMs) affecting multiple organs. Genetic testing identified a novel duplication mutation in the ENG gene, c.680_687dupACTCGGCC (p.G230Tfs*8).
DOI: 10.6084/m9.figshare.29097302.v1
title: Raw data for:Effect of pH on the cyanobacterial circadian oscillator in vitro

description: This dataset contains the raw data underlying the study titled “Effect of pH on the cyanobacterial circadian oscillator in vitro”. The data were collected to investigate how different pH conditions affect the behavior and biochemical properties of the KaiABC circadian oscillator in cyanobacteria.
DOI: 10.6084/m9.figshare.7336193.v2
title: Trajectories from Laboratory Insect Swarms

description: This dataset contains three-dimensional, time-resolved trajectories including velocities and accelerations of laboratory mating swarms of the non-biting midge Chironomus Riparius. Details about the dataset and the observations can be found in "Three-Dimensional Time-Resolved Trajectories from Laboratory Insect Swarms" by the same authors.<br>
DOI: 10.6084/m9.figshare.c.3258022_d3.v1
title: Irregular Breathing.zip

description: 5 trials of irregular breathing in total from 5 participants.

Chest surface motion is of significant importance as it contains information of respiratory and cardiac systems along with the complex coupling between these two systems. It is not only critical in radiotherapy, but also useful in personalized health systems for continuous cardiorespiratory monitoring. In this dataset, a multimodal setup is employed to simultaneously acquire cardiorespiratory signals. These signals include high-density trunk surface motion (from 16 distinct locations) with VICON motion capture, nasal breathing from thermal sensor, respiratory effort from strain belt and electrocardiogram in lead-II configuration. This dataset can not only be used for evaluating prediction algorithms for radiotherapy applications, but also can be employed for developing techniques to evaluate the cardiomechanics and hemodynamic parameters from chest surface motion in wearable/home monitoring applications.
DOI: 10.17632/4fnjhh6nbg
title: Research Data for Comparing logistic regression and machine learning for obesity risk prediction: a systematic review and meta-analysis

description: 1. Obesity Review Data Extraction file: This file lists all the data items extracted for the review. It has two sheets. Sheet 1(termed Data_extraction) is the list of data items extracted from the included studies. Sheet 2 (termed meta_data) is the dataset for the meta-analysis.

4. Meta_obesity : contains all the codes used in the meta-analysis.
DOI: 10.6084/m9.figshare.14462103.v5
title: A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence

description: Raw NGS and fluorescent data for the paper "A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence"<br>
DOI: 10.6084/m9.figshare.4923395.v2
title: Experimental Data 55.8 Deg Defect

description: Experimental data of the ball bearing with a defect length of 55.8 degrees , 100 micron deep at varying speeds and at various loads from 500 N to 3000 N.
DOI: 10.6084/m9.figshare.14887932.v1
title: b5text_processed_lemmatised

description: processed and lemmatised manufacturing text data relevant to 5 classes of parts: bearings, collet, sprocket, bolt, spring webscraped from different web based platforms like mcmaster carr, traceparts etc.
DOI: 10.6084/m9.figshare.20103284.v1
title: MorphData_forR

description: Morphological data reported in Taylor et al.
DOI: 10.6084/m9.figshare.1291033.v1
title: Activity Sessions datasets

description: This article contains a set of datasets used to demonstrate a strong regularity in inter-activity time. <strong>See the paper:</strong> User Session Identification Based on Strong Regularities in Inter-activity Time http://arxiv.org/abs/1411.2878 <strong>Abstract</strong> Session identification is a common strategy used to develop metrics for web analytics and behavioral analyses of user-facing systems. Past work has argued that session identification strategies based on an inactivity threshold is inherently arbitrary or advocated that thresholds be set at about 30 minutes. In this work, we demonstrate a strong regularity in the temporal rhythms of user initiated events across several different domains of online activity (incl. video gaming, search, page views and volunteer contributions). We describe a methodology for identifying clusters of user activity and argue that regularity with which these activity clusters appear implies a good rule-of-thumb inactivity threshold of about 1 hour. We conclude with implications that these temporal rhythms may have for system design based on our observations and theories of goal-directed human activity.
DOI: 10.6084/m9.figshare.22060973.v1
title: Supplementary Material for: Whole-Exome Sequencing Indicated New Candidate Genes Associated with Unilateral Cryptorchidism in Pigs

description: <b><i>Introduction:</i></b> Cryptorchidism is a hereditary anomaly characterized by the incomplete descent of one or both testicles to the scrotum. One of the challenges of this anomaly is that the retained testicle maintains its endocrine function. As a consequence, cryptorchid animals produce hormone-tainted meat in comparison to castrated animals and are likely to be more aggressive. Cryptorchidism can lead to reduced animal welfare outcomes and cause economic losses. Identifying genetic markers for cryptorchidism is an essential step toward mitigating these negative outcomes and may facilitate genome manipulation to reduce the occurrence of cryptorchidism. Attempts to identify such markers have used genome-wide association studies. Using whole-exome sequencing, we aimed to identify single nucleotide polymorphisms (SNPs) in the coding regions of cryptorchid pigs and to characterize functional pathways concerning these SNPs. <b><i>Methods:</i></b> DNA was extracted and sequenced from 5 healthy and 5 cryptorchid animals from the Landrace breed, using the Illumina HiSeq 2500 platform. Data were pre-processed using the SeqyClean tool and further mapped against the swine reference genome (<i>Sus scrofa</i> 11.1) using BWA software. GATK was used to identify polymorphisms (SNPs and InDels), which were annotated using the VEP tool. Network prediction and gene ontology enrichment analysis were conducted using the Cytoscape platform, and STRING software was used for visualization. <b><i>Results:</i></b> A total of 63 SNPs were identified across the genes <i>PIGB</i>, <i>CCPG1</i>, <i>COMMD9</i>, <i>LDLRAD3</i>, <i>TRIM44</i>, <i>MYLPF</i>, <i>SEPTIN</i>, <i>ZNF48</i>, <i>TIA1</i>, <i>FAIM2</i>, <i>KRT18</i>, <i>FBP1</i>, <i>FBP2</i>, <i>CTSL</i>, <i>DAPK1</i>, <i>DHX8</i>, <i>GPR179</i>, <i>DEPDC1B</i>, ENSSSCG00000049573, ENSSSCG00000016384, ENSSSCG00000022657, ENSSSCG00000038825, and ENSSSCG00000001229. Using pathway enrichment analyses and network prospection, we have identified the following significant adjusted <i>p</i> value threshold of 0.001 involved with the biological function pathways of estrogen signaling, cytoskeleton organization, and the pentose phosphate pathway. <b><i>Conclusion:</i></b> Our data suggest the involvement of new SNPs and genes in developing cryptorchidism in pigs. However, further studies are needed to validate our results in a larger cohort population. Variations in the <i>GPR179</i> gene, with implications at the protein level, may be associated with the appearance of this anomaly in the swine. Finally, we are showing that the estrogen signaling pathway may be involved in the pathophysiological mechanisms of this congenital anomaly as previously reported in GWAS.
DOI: 10.6084/m9.figshare.971058.v1
title: Brain Lobes Atlas

description: An atlas of the human cerebral lobes in MNI305 coordinates. This is the atlas used in the article "Brain volumes and Val66Met polymorphism of the BDNF gene: local or global effects?" By R. Toro et al (2008)
DOI: 10.6084/m9.figshare.9974357.v1
title: Distributed coding of choice, action, and engagement across the mouse brain

description: Data from "Distributed coding of choice, action, and engagement across the mouse brain" by Nicholas A. Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D. Harris, Nature 2019.<br>Vision, choice, action, and behavioral engagement arise from neuronal activity that may be distributed across brain regions. Here we delineate the spatial distribution of neurons underlying these processes. We used Neuropixels probes to record from ~30,000 neurons in 42 brain regions of mice performing a visual discrimination task. Neurons in nearly all regions responded non-specifically when the mouse initiated an 5 action. By contrast, neurons encoding visual stimuli and upcoming choices occupied restricted regions in neocortex, basal ganglia, and midbrain. Choice signals were rare and emerged with indistinguishable timing across regions. Midbrain neurons were activated before contralateral choices and suppressed before ipsilateral choices, whereas forebrain neurons could prefer either side. Brain-wide pre-stimulus activity 10 predicted engagement in individual trials and in the overall task, with enhanced subcortical but suppressed neocortical activity during engagement. These results reveal organizing principles for the distribution of neurons encoding behaviorally relevant variables across the mouse brain.<br><br>[experimental] ONE interface<br><br>The data is available via the ONE interface.<br><br>Installation instructions here.<br><br><br>To search and download this dataset:<br><br><br>import onelight as one<br>sessions = one.search(['trials']) # search for all sessions that have a `trials` object<br>session = sessions[0] # take the first session<br>trials = one.load_object(session, 'trials') # load the trials object<br>print(trials.intervals) # trials is a Bunch, values are NumPy arrays or pandas DataFrames<br>print(trials.goCue_times)<br><br><br>
DOI: 10.17632/b9yxkx4wkt
title: Data for: Role of Fairness, Accountability, and Transparency in Algorithms: Proposing Algorithmic Affordance

description: This is the data for the study.
DOI: 10.17632/w32mrdmw7h
title: Epoxy/Carbon Twill Woven Composite : Mechanical Properties

description: Raw force vs. stroke plots for on-axis tension, off-axis 45 degree tension, and on-axis compression for twill woven carbon/epoxy composite.  Details are reported in a concurrent article in Data in Brief. 
Research was sponsored by the Office of Naval Research under grant number N00014-20-1-2594.
DOI: 10.6084/m9.figshare.24718074.v3
title: Data from: Discovery of an endemism hotspot of freshwater mussels (Bivalvia: Unionidae) in Assam, with a description of two new genera

description: This data supplements our article "Discovery of an endemism hotspot of freshwater mussels (Bivalvia: Unionidae) in Assam, with a description of two new genera" (Zoological Journal of the Linnean Society, 2024; doi: 10.1093/zoolinnean/zlae052) and contains 11 files, described below.<b>Supplementary Datasets</b>:<b>Dataset S1.</b> Information on new samples and DNA sequences of freshwater mussels from Assam [separate XLSX file].<b>Dataset S2.</b> Information on DNA sequences of freshwater mussels (Unionidae) used to reconstruct multi-locus phylogenies (one or two haplotypes per species) [separate XLSX file].<b>Dataset S3.</b> Reference DNA sequence library for correct molecular identification of freshwater mussels of the subfamily Parreysiinae from South and Southeast Asia (one or two haplotypes per species) [separate XLSX file].<b>Dataset S4.</b> Reference <i>COI</i> sequences for correct molecular identification of freshwater mussels of the subfamily Parreysiinae from South and Southeast Asia [separate FASTA file].<b>Supplementary Figure:</b><b>Figure S1.</b> [PDF and TRE files] Maximum likelihood phylogeny based on the reference <i>COI</i> barcode library of Asian Parreysiinae. The phylogeny was calculated using unique haplotypes, while all sequences were added to this tree at the post-calculation stage for visualization purposes. Each sequence name contains the following information: GenBank accession number | species name | collecting region (see Datasets S1 and S3 for sample detail and Dataset S4 for <i>COI</i> gene sequences). The black numbers near nodes are bootstrap support values of IQ-TREE v. 1.6.12. The scale bar indicates the branch length (substitutions per site). The titles of new sequences from Assam are red (colors only in PDF file).<b>Supplementary Tables:</b><b>Supplementary Table S1.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the tribe Parreysiini [separate PDF file].<b>Supplementary Table S2.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Lamellidens </i>[separate PDF file]<i>.</i><b>Supplementary Table S3.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Trapezidens </i>and <i>Balwantia soleniformis </i>[separate PDF file]<i>.</i><b>Supplementary Table S4.</b> The <i>COI</i>-based uncorrected p-distances (mean ± standard error estimate, %) between species in the genus <i>Indonaia </i>and <i>Pseudoscabies scobina </i>[separate PDF file]<i>.</i><br><b>Cover Image:</b><b><i>Cover image:</i></b> Living topotype of <i>Assamnaia involuta</i> (Hanley, 1856) from a shallow oxbow lake in the Dhansiri River valley, Golaghat, Assam, 26 March 2022. Note unusual bluish brilliance of the periostracum. Photo: J. Sonowal & D. Kardong [separate PDF file].
DOI: 10.6084/m9.figshare.29115113.v1
title: meta_analysis_data

description: meta_analysis_data
DOI: 10.6084/m9.figshare.3529076.v1
title: Appendix A. Main topographic and structural characteristics of the sampling plots.

description: Main topographic and structural characteristics of the sampling plots.
DOI: 10.6084/m9.figshare.5128189.v1
title: Supplementary Material for: Proinflammatory Caspase A Activation and an Antiviral State Are Induced by a Zebrafish Perforin after Possible Cellular and Functional Diversification from a Myeloid Ancestor

description: In mammals, perforins play a central role in the granule-dependent cell death induced by natural killer T cells and cytotoxic T lymphocytes, and participate both in the defense against virus-infected and neoplastic cells and in the recognition of nonself molecules by the immune system. Little is known about fish perforin genes. We examined the zebrafish with the aim of increasing our knowledge about the role of perforins. We characterized 6 perforin genes in the zebrafish genome, and we studied them at the evolutionary level in combination with expression patterns in several tissues and cell populations, during both larval development and in the course of a viral infection. Our results suggest the specialization of different cell types in the production of perforins. Moreover, functional diversification during the evolution of these molecules could be inferred from this study. In particular, one of the genes, <i>prf19b</i>, which is mainly produced by myeloid cells, seemed to be involved in antiviral defense, conferring protection after an in vivo infection.
DOI: 10.6084/m9.figshare.22178669.v1
title: LAPOP Combined Data Set

description: Data set combining 2006, 2008, 2010, 2012, 2014 Domincian Republic datasets from LAPOP AmericasBarometer Survey. Parent datasets publically available at https://www.vanderbilt.edu/lapop/core-surveys.php
DOI: 10.6084/m9.figshare.24715734.v1
title: Prioritization of control measures

description:  In this study, two proactive and reactive layers were selected before and after leakage of tanks, respectively. Then, criteria and alternatives were selected to perform fuzzy TOPSIS (FTOPSIS) and find the best alternative based on the literature review and Hendershot approach. The linear model of the fuzzy Best-Worst method (FBWM) was constructed and resolved using Lingo 17 software.
DOI: 10.6084/m9.figshare.27998295.v1
title: Liu et al_ chronic traffic noise exposure and noise tolerance_ESM.docx from Growing up with chronic traffic noise exposure leads to transient but not long-term noise tolerance in a songbird

description: SEM Figures 1-2, SEM Tables 1-2 and infomration on Breeding procedures and noise levels during breeding
DOI: 10.6084/m9.figshare.6141470.v3
title: Coronary Atherosclerosis

description: Prevalence of coronary atherosclerosis in Afro-descendants of remaining quilombo communities of Alcântara, Maranhão, Brazil (2013).
DOI: 10.6084/m9.figshare.16960855.v1
title: The RETA Benchmark for Retinal Vascular Tree Analysis

description: Topological and geometrical analysis of retinal blood vessels could be a cost-effective way to detect various common diseases. Automated vessel segmentation and vascular tree analysis models require powerful generalization capability in clinical applications. In this work, we constructed a novel benchmark RETA with 81 labelled vessel masks aiming to facilitate retinal vessel analysis. A semi-automated coarse-to-fine workflow was proposed for vessel annotation task. During database construction, we strived to control inter-annotator and intra-annotator variability by means of multi-stage annotation and label disambiguation on self-developed dedicated software. In addition to binary vessel masks, we obtained other types of annotations including artery/vein masks, vascular skeletons, bifurcations, trees and abnormalities. Subjective and objective quality validations of the annotated vessel masks demonstrated significantly improved quality over the existing open datasets. Our annotation software is also made publicly available serving the purpose of pixel-level vessel visualization. Researchers could develop vessel segmentation algorithms and evaluate segmentation performance using RETA. Moreover, it might promote the study of cross-modality tubular structure segmentation and analysis. <br> Our website: https://www.reta-benchmark.org<br>
DOI: 10.6084/m9.figshare.26087872.v1
title: HiGTS_2010s2

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2010s2 contains the data from April 1, 2010 to June 30, 2010.
DOI: 10.17632/sk39j4x3y4
title: Exhibition film ACHEMA 2024 Prof. Dr. Timo Gehring

description: Exhibition film from our ACHEMA 2024 booth Hall 6.0 E31 on algae technology with a rotating photobioreactor.
DOI: 10.23645/epacomptox.6062545.v3
title: Animal Toxicity Studies: Effects and Endpoints (Toxicity Reference Database - ToxRefDB files)

description: The Toxicity Reference Database (ToxRefDB) structures data from approximately 5,900 studies or study summaries based on <i>in vivo</i> experiments, conducted predominantly to guidelines and specifications from the US Environmental Protection Agency (US EPA) and the National Toxicology Program (NTP) headquartered at the National Institute of Environmental Health Sciences, into a public resource that has been used in the training and validation of predictive toxicology models.
DOI: 10.6084/m9.figshare.12197655.v2
title: Fake Satellite Imagery

description: This data set contains the original training data and the processed result of the fake satellite images. Also, the codes to detect fake satellite images are also attached.<br>
DOI: 10.6084/m9.figshare.13218026.v1
title: CT-MR Registration sample images

description: Images adapted from the MIT image registration course by Zöllei and Wells:<br>https://ocw.mit.edu/courses/health-sciences-and-technology/hst-582j-biomedical-signal-and-image-processing-spring-2007/lecture-notes/l16_reg1.pdf<br>
DOI: 10.6084/m9.figshare.15081636.v1
title: RawDatasets + R Scripts

description: This file contains all data input for DOMOUSE.<br>
DOI: 10.6084/m9.figshare.16974826.v1
title: S13. MaAsLin2 for first dataset

description: Supplementary Table S13. Results from MaAsLin2 analysis detecting associations between bacterial genera and group membership, social interactions, parasite richness, sex, age, diet and precipitation.<br>