cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22133318
title: Hyperparasitoid behaviour to injected caterpillars

description: <strong>Results of the no-choice assay to assess the role of </strong><em><strong>Wolbachia</strong></em><strong> in hyperparasitoid host location. </strong>Bar plots showing (a) the average time (±SE) until first contact of <em>B. galactopus</em> with the caterpillar host <em>P. brassicae</em>, and (b) total mounting time (±SE) of <em>B. galactopus</em> on the caterpillars within 1 h after first contact was made. Hyperparasitoids were subjected to four treatments, including unparasitised caterpillars (Unparasitised-PBS; <em>n</em> = 39), caterpillars parasitised by <em>C. glomerata</em> (Parasitised-PBS; <em>n </em>= 36), caterpillars injected once with <em>Wolbachia</em> (Wolb-PBS; <em>n</em> = 50), and caterpillars injected twice with <em>Wolbachia</em> (Wolb-Wolb; <em>n</em> = 46). Statistical differences among treatments are indicated with different letters based on Kruskal-Wallis tests with Dunn’s test for multiple comparisons including a Hochberg correction. Pie charts show the percentage of responding (black) and non-responding (grey) hyperparasitoids.
DOI: 10.6084/m9.figshare.22133318.v1
title: Hyperparasitoid behaviour to injected caterpillars

description: <strong>Results of the no-choice assay to assess the role of </strong><em><strong>Wolbachia</strong></em><strong> in hyperparasitoid host location. </strong>Bar plots showing (a) the average time (±SE) until first contact of <em>B. galactopus</em> with the caterpillar host <em>P. brassicae</em>, and (b) total mounting time (±SE) of <em>B. galactopus</em> on the caterpillars within 1 h after first contact was made. Hyperparasitoids were subjected to four treatments, including unparasitised caterpillars (Unparasitised-PBS; <em>n</em> = 39), caterpillars parasitised by <em>C. glomerata</em> (Parasitised-PBS; <em>n </em>= 36), caterpillars injected once with <em>Wolbachia</em> (Wolb-PBS; <em>n</em> = 50), and caterpillars injected twice with <em>Wolbachia</em> (Wolb-Wolb; <em>n</em> = 46). Statistical differences among treatments are indicated with different letters based on Kruskal-Wallis tests with Dunn’s test for multiple comparisons including a Hochberg correction. Pie charts show the percentage of responding (black) and non-responding (grey) hyperparasitoids.
DOI: 10.6084/m9.figshare.21253524
title: Raw Y-tube olfactometer data

description: <strong>Preference of the hyperparasitoid </strong><em><strong>B. galactopus </strong></em><strong>for caterpillar body odours: </strong>of (1) <em>C. glomerata </em>parasitised ­­­­­and unparasitised <em>P. brassicae </em>caterpillars. (2) <em>H. ebeninus </em>parasitised ­­­­­and unparasitised <em>P. brassicae </em>caterpillars This was tested with Y-tube olfactometer tests. Tested combinations were selected according to the hypothesis that hyperparasitoids can use caterpillar body odours, which are (at least partially) determined by the external microbiome.
DOI: 10.6084/m9.figshare.21253524.v1
title: Raw Y-tube olfactometer data

description: <strong>Preference of the hyperparasitoid </strong><em><strong>B. galactopus </strong></em><strong>for caterpillar body odours: </strong>of (1) <em>C. glomerata </em>parasitised ­­­­­and unparasitised <em>P. brassicae </em>caterpillars. (2) <em>H. ebeninus </em>parasitised ­­­­­and unparasitised <em>P. brassicae </em>caterpillars This was tested with Y-tube olfactometer tests. Tested combinations were selected according to the hypothesis that hyperparasitoids can use caterpillar body odours, which are (at least partially) determined by the external microbiome.
DOI: 10.6084/m9.figshare.21253518
title: Raw VOC data per sample

description: <strong>Volatile compounds detected in the headspace of of untreated, starved or starved then surface sterilised </strong><em><strong>C. glomerata</strong></em><strong> parasitised or unparasitised caterpillars (</strong><em><strong>P. brassicae</strong></em><strong>). </strong>Amounts of individual compounds are given as the of peak height. Abbreviations used: Cg = Untreated parasitised caterpillars; Cg-ST = starved parasitised caterpillars; Cg-ST+EMD = starved then external microbiome disrupted caterpillars. Pb = Untreated unparasitised caterpillars; Pb-ST = starved unparasitised caterpillars; Pb-ST+EMD = starved then external microbiome disrupted unparasitised caterpillars.
DOI: 10.6084/m9.figshare.21253455
title: Raw zOTU data per sample

description: <strong>Caterpillar-associated bacterial communities of untreated, starved or starved then external microbiome disrupted (EMD) </strong><em><strong>C. glomerata</strong></em><strong> parasitised or unparasitised caterpillars (</strong><em><strong>P. brassicae</strong></em><strong>) </strong>(1) Both<strong> </strong>external and internal bacterial zOTU count of the different caterpillar samples. (2) External only (3) internal only.
DOI: 10.5281/zenodo.7683448
title: Dataset of systematic literature review of paper "Analysis of The Impact of Heat Stress on Embryo Development"

description: This the dataset of the paper. It included 1. Abstract of papers 2. Details of papers 3. PRISMA checklist
DOI: 10.5281/zenodo.7683447
title: Dataset of systematic literature review of paper "Analysis of The Impact of Heat Stress on Embryo Development"

description: This the dataset of the paper. It included 1. Abstract of papers 2. Details of papers 3. PRISMA checklist
DOI: 10.5281/zenodo.7700612
title: Dataset of systematic literature review of paper "Analysis of The Impact of Heat Stress on Embryo Development"

description: This the dataset of the paper. It included 1. Abstract of papers 2. Details of papers 3. PRISMA checklist
DOI: 10.5281/zenodo.7700613
title: Dataset of systematic literature review of paper "Analysis of The Impact of Heat Stress on Embryo Development"

description: This the dataset of the paper. It included 1. Abstract of papers 2. Details of papers 3. PRISMA checklist
DOI: 10.5281/zenodo.7694107
title: Commercial Available Compounds

description: This dataset was collected and integrated from ZINC and eMolecules databases, bringing together the unique strengths and features of each. The resulting dataset contains a vast array of information about small molecules, including their chemical structures, properties, and activities. This integrated dataset has the potential to greatly benefit research in drug discovery, chemical biology, and other fields, as it provides a comprehensive and diverse collection of small molecules that can be used for a variety of applications.
DOI: 10.5281/zenodo.7694108
title: Commercial Available Compounds

description: This dataset was collected and integrated from ZINC and eMolecules databases, bringing together the unique strengths and features of each. The resulting dataset contains a vast array of information about small molecules, including their chemical structures, properties, and activities. This integrated dataset has the potential to greatly benefit research in drug discovery, chemical biology, and other fields, as it provides a comprehensive and diverse collection of small molecules that can be used for a variety of applications.
DOI: 10.6084/m9.figshare.20277759.v2
title: Fungal genome size and composition reflect ecological strategies along soil fertility gradientsadd code and derived data

description: Fungal genome size and composition and their community weighted mean along the Australian continent <br>
DOI: 10.5281/zenodo.7693585
title: Lupi et al data for Disentangling water quality indices to enhance the valuation of divergent ecosystem services PNAS

description: State dataset for PNAS article, in press, Lupi, F., J.A. Herriges, R.J. Stevenson, and H. Kim. <em>In Press</em>, Disentangling water quality indices to enhance the valuation of divergent ecosystem services. <em>Proceedings of the National Academy of Science.</em>
DOI: 10.5281/zenodo.7693584
title: Lupi et al data for Disentangling water quality indices to enhance the valuation of divergent ecosystem services PNAS

description: State dataset for PNAS article, in press, Lupi, F., J.A. Herriges, R.J. Stevenson, and H. Kim. <em>In Press</em>, Disentangling water quality indices to enhance the valuation of divergent ecosystem services. <em>Proceedings of the National Academy of Science.</em>
DOI: 10.6084/m9.figshare.22218235
title: Socioeconomic Impact of COVID-19 during three phases

description: Provides in-depth data regarding diverse socio-economic impacts, mobility, and human behavioral changes due to COVID-19 across three identified pandemic phases. Data was gathered through a field survey. Useful for cross-impact analysis across time which depicts the evolution of socio-economic, mobility, and human behavioral changes over pandemic periods. This is also useful for policy decisions and implications.
DOI: 10.6084/m9.figshare.22218235.v1
title: Socioeconomic Impact of COVID-19 during three phases

description: Provides in-depth data regarding diverse socio-economic impacts, mobility, and human behavioral changes due to COVID-19 across three identified pandemic phases. Data was gathered through a field survey. Useful for cross-impact analysis across time which depicts the evolution of socio-economic, mobility, and human behavioral changes over pandemic periods. This is also useful for policy decisions and implications.
DOI: 10.6084/m9.figshare.21865843
title: Homology modelling and molecular simulation approach to prediction of B-cell and T-cell epitopes in an OMP25 peptide vaccine against <i>Brucella abortus</i>

description: The live attenuated vaccine composition against brucellosis poses potential risks to recipient animals. Therefore, we have analysed an <i>in-silico</i> approach to design a novel multi-epitope vaccine peptide to elicit a desirable immune response against <i>Brucella abortus</i> infection. This study designed a peptide vaccine based on outer membrane protein from <i>B. abortus</i>. The selected OMP sequence shows 0.7575 antigenic proteins. We predicted the T-cell epitopes of different lengths. Cluster analysis was performed for 180 epitope peptides, showcasing a total of 19 clusters, constituting 14 clusters as Consensus clusters and 5 as Singleton clusters. We select the top three clusters which has 24 peptides showing antigen property. Selected 24-antigen peptides were docked with MHC classes I and II and selected the top eight peptides based on binding energy used for molecular dynamic simulation. Immuno-informatics analysis, Molecular Docking and Molecular simulation indicated that epitope peptide vaccine could work as effective peptides helpful in scheming peptide vaccine against <i>B. abortus</i> infection by developing broad-spectrum peptide vaccine in near future. The use of Omp25 as a vaccine candidate has been supported based on previous experimental studies. Multitope vaccine can be developed which can protect mice against virulent <i>B. abortus</i> challenge.
DOI: 10.6084/m9.figshare.21865843.v1
title: Homology modelling and molecular simulation approach to prediction of B-cell and T-cell epitopes in an OMP25 peptide vaccine against <i>Brucella abortus</i>

description: The live attenuated vaccine composition against brucellosis poses potential risks to recipient animals. Therefore, we have analysed an <i>in-silico</i> approach to design a novel multi-epitope vaccine peptide to elicit a desirable immune response against <i>Brucella abortus</i> infection. This study designed a peptide vaccine based on outer membrane protein from <i>B. abortus</i>. The selected OMP sequence shows 0.7575 antigenic proteins. We predicted the T-cell epitopes of different lengths. Cluster analysis was performed for 180 epitope peptides, showcasing a total of 19 clusters, constituting 14 clusters as Consensus clusters and 5 as Singleton clusters. We select the top three clusters which has 24 peptides showing antigen property. Selected 24-antigen peptides were docked with MHC classes I and II and selected the top eight peptides based on binding energy used for molecular dynamic simulation. Immuno-informatics analysis, Molecular Docking and Molecular simulation indicated that epitope peptide vaccine could work as effective peptides helpful in scheming peptide vaccine against <i>B. abortus</i> infection by developing broad-spectrum peptide vaccine in near future. The use of Omp25 as a vaccine candidate has been supported based on previous experimental studies. Multitope vaccine can be developed which can protect mice against virulent <i>B. abortus</i> challenge.
DOI: 10.6084/m9.figshare.22117285
title: Ligand- and structure-based identification of GPER-binding small molecules

description: G protein estrogen receptor (GPER) has been implicated in oestrogen-signalling routes in several biological systems and has been associated with different pathophysiological processes. So, there has been an increasing interest in identifying GPER-binding small molecules to modulate their biological activity. To this aim, we report the ligand-based virtual screening of GPER-binding molecules based on chemical similarity to (-)-epicatechin (flavanol reported as a ligand for the GPER receptor). Further structure-based screening allowed us to identify molecules with higher binding affinity to GPER based on molecular docking, molecular dynamic simulation and adaptative biasing force calculations. Here, we predicted 4 small molecules with a high ability to bind GPER exhibit favourable energy interaction.
DOI: 10.6084/m9.figshare.22117285.v1
title: Ligand- and structure-based identification of GPER-binding small molecules

description: G protein estrogen receptor (GPER) has been implicated in oestrogen-signalling routes in several biological systems and has been associated with different pathophysiological processes. So, there has been an increasing interest in identifying GPER-binding small molecules to modulate their biological activity. To this aim, we report the ligand-based virtual screening of GPER-binding molecules based on chemical similarity to (-)-epicatechin (flavanol reported as a ligand for the GPER receptor). Further structure-based screening allowed us to identify molecules with higher binding affinity to GPER based on molecular docking, molecular dynamic simulation and adaptative biasing force calculations. Here, we predicted 4 small molecules with a high ability to bind GPER exhibit favourable energy interaction.
DOI: 10.6084/m9.figshare.22218577
title: The Development of SSR primers

description: The raw data of SSR primers design based on RAD-seq
DOI: 10.6084/m9.figshare.22218577.v1
title: The Development of SSR primers

description: The raw data of SSR primers design based on RAD-seq
DOI: 10.6084/m9.figshare.22218808
title: Supporting documents from Sex-biased infections scale to population impacts for an emerging wildlife disease

description: Contains supplemental appendix, tables, figures, and additional methods description
DOI: 10.6084/m9.figshare.14554679
title: Statistical calculations (R Code) from Know your foe: synanthropic spiders are deterred by semiochemicals of European fire ants

description: Many ants prey on spiders, suggesting that web-building spiders may avoid micro-locations near ant colonies or frequented by foraging ants. Here we tested the hypothesis that ant-derived semiochemicals deter synanthropic spiders. To generate stimuli, we exposed filter paper for 12 h to workers of European fire ants, <i>Myrmica rubra,</i> black garden ants, <i>Lasius niger,</i> or western carpenter ants, <i>Camponotus modoc</i>, and then offered select urban spiders in 3-chamber olfactometer bioassays a choice between ant-exposed filter paper and unexposed control filter paper. Semiochemical deposits of <i>M. rubra</i>, but not of <i>L. niger</i> or <i>C. modoc</i>, had a significant deterrent effect on subadults of the false black widow, <i>Steatoda grossa,</i> the black widow, <i>Latrodectus hesperus</i>, and the hobo spider, <i>Eratigena agrestis,</i> as well as a moderate (but statistically not significant) deterrent effect on the cross spider, <i>Araneus diadematus</i>. The deterrent effect caused by semiochemical deposits of <i>M. rubra</i> may be attributable to the aggressive nature and efficient foraging of <i>M. rubra</i> in its invaded North American range, exerting selection pressure on community members to recognize <i>M. rubra</i> semiochemicals and to avoid micro-locations occupied by <i>M. rubra</i>.
DOI: 10.6084/m9.figshare.14554679.v1
title: Statistical calculations (R Code) from Know your foe: synanthropic spiders are deterred by semiochemicals of European fire ants

description: Many ants prey on spiders, suggesting that web-building spiders may avoid micro-locations near ant colonies or frequented by foraging ants. Here we tested the hypothesis that ant-derived semiochemicals deter synanthropic spiders. To generate stimuli, we exposed filter paper for 12 h to workers of European fire ants, <i>Myrmica rubra,</i> black garden ants, <i>Lasius niger,</i> or western carpenter ants, <i>Camponotus modoc</i>, and then offered select urban spiders in 3-chamber olfactometer bioassays a choice between ant-exposed filter paper and unexposed control filter paper. Semiochemical deposits of <i>M. rubra</i>, but not of <i>L. niger</i> or <i>C. modoc</i>, had a significant deterrent effect on subadults of the false black widow, <i>Steatoda grossa,</i> the black widow, <i>Latrodectus hesperus</i>, and the hobo spider, <i>Eratigena agrestis,</i> as well as a moderate (but statistically not significant) deterrent effect on the cross spider, <i>Araneus diadematus</i>. The deterrent effect caused by semiochemical deposits of <i>M. rubra</i> may be attributable to the aggressive nature and efficient foraging of <i>M. rubra</i> in its invaded North American range, exerting selection pressure on community members to recognize <i>M. rubra</i> semiochemicals and to avoid micro-locations occupied by <i>M. rubra</i>.
DOI: 10.6084/m9.figshare.22218880
title: Statistical calculations (R Code) from Know your foe: synanthropic spiders are deterred by semiochemicals of European fire ants

description: Many ants prey on spiders, suggesting that web-building spiders may avoid micro-locations near ant colonies or frequented by foraging ants. Here we tested the hypothesis that ant-derived semiochemicals deter synanthropic spiders. To generate stimuli, we exposed filter paper for 12 h to workers of European fire ants, <i>Myrmica rubra,</i> black garden ants, <i>Lasius niger,</i> or western carpenter ants, <i>Camponotus modoc</i>, and then offered select urban spiders in 3-chamber olfactometer bioassays a choice between ant-exposed filter paper and unexposed control filter paper. Semiochemical deposits of <i>M. rubra</i>, but not of <i>L. niger</i> or <i>C. modoc</i>, had a significant deterrent effect on subadults of the false black widow, <i>Steatoda grossa,</i> the black widow, <i>Latrodectus hesperus</i>, and the hobo spider, <i>Eratigena agrestis,</i> as well as a moderate (but statistically not significant) deterrent effect on the cross spider, <i>Araneus diadematus</i>. The deterrent effect caused by semiochemical deposits of <i>M. rubra</i> may be attributable to the aggressive nature and efficient foraging of <i>M. rubra</i> in its invaded North American range, exerting selection pressure on community members to recognize <i>M. rubra</i> semiochemicals and to avoid micro-locations occupied by <i>M. rubra</i>.
DOI: 10.6084/m9.figshare.22218880.v1
title: Statistical calculations (R Code) from Know your foe: synanthropic spiders are deterred by semiochemicals of European fire ants

description: Many ants prey on spiders, suggesting that web-building spiders may avoid micro-locations near ant colonies or frequented by foraging ants. Here we tested the hypothesis that ant-derived semiochemicals deter synanthropic spiders. To generate stimuli, we exposed filter paper for 12 h to workers of European fire ants, <i>Myrmica rubra,</i> black garden ants, <i>Lasius niger,</i> or western carpenter ants, <i>Camponotus modoc</i>, and then offered select urban spiders in 3-chamber olfactometer bioassays a choice between ant-exposed filter paper and unexposed control filter paper. Semiochemical deposits of <i>M. rubra</i>, but not of <i>L. niger</i> or <i>C. modoc</i>, had a significant deterrent effect on subadults of the false black widow, <i>Steatoda grossa,</i> the black widow, <i>Latrodectus hesperus</i>, and the hobo spider, <i>Eratigena agrestis,</i> as well as a moderate (but statistically not significant) deterrent effect on the cross spider, <i>Araneus diadematus</i>. The deterrent effect caused by semiochemical deposits of <i>M. rubra</i> may be attributable to the aggressive nature and efficient foraging of <i>M. rubra</i> in its invaded North American range, exerting selection pressure on community members to recognize <i>M. rubra</i> semiochemicals and to avoid micro-locations occupied by <i>M. rubra</i>.
DOI: 10.5281/zenodo.7699185
title: Receiver Functions of the final 17 events in Zhang et al., 2023

description: The analyzed receiver functions for the final migration result in Zhang et al., 2023. <strong>Mantle transition zone structure beneath the northern South China Sea from 3-D Kirchhoff Migration of Receiver Functions: implication for origin of Hainan Plume.</strong>
DOI: 10.5281/zenodo.7699184
title: Receiver Functions of the final 17 events in Zhang et al., 2023

description: The analyzed receiver functions for the final migration result in Zhang et al., 2023. <strong>Mantle transition zone structure beneath the northern South China Sea from 3-D Kirchhoff Migration of Receiver Functions: implication for origin of Hainan Plume.</strong>
DOI: 10.6084/m9.figshare.19249002
title: Concentration inequalities for Poisson point processes with application to adaptive intensity estimation

description: We derive concentration inequalities for maxima of empirical processes associated with Poisson point processes. The proofs are based on a careful application of Ledoux's entropy method. We demonstrate the utility of the obtained concentration inequalities by application to adaptive intensity estimation.
DOI: 10.6084/m9.figshare.19249002.v1
title: Concentration inequalities for Poisson point processes with application to adaptive intensity estimation

description: We derive concentration inequalities for maxima of empirical processes associated with Poisson point processes. The proofs are based on a careful application of Ledoux's entropy method. We demonstrate the utility of the obtained concentration inequalities by application to adaptive intensity estimation.
DOI: 10.6084/m9.figshare.22201577
title: Supplementary File S3 from Detection of dairy products from multiple taxa in Late Neolithic pottery from Poland: an integrated biomolecular approach

description: Contaminant database used for Maxquant analysis (FASTA format)
DOI: 10.6084/m9.figshare.22201577.v2
title: Supplementary File S3 from Detection of dairy products from multiple taxa in Late Neolithic pottery from Poland: an integrated biomolecular approach

description: Contaminant database used for Maxquant analysis (FASTA format)
DOI: 10.6084/m9.figshare.22201577.v1
title: Supplementary File S3 from Detection of dairy products from multiple taxa in late neolithic pottery from Poland: an integrated biomolecular approach

description: Contaminant database used for Maxquant analysis (FASTA format)
DOI: 10.5281/zenodo.7700825
title: Receiver Functions of the final 17 events and the MTZ interfaces depth in Zhang et al., 2023

description: The analyzed receiver functions for the final migration result in Zhang et al., 2023. <strong>Mantle transition zone structure beneath the northern South China Sea from 3-D Kirchhoff Migration of Receiver Functions: implication for origin of Hainan Plume.</strong>