cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3948515
title: nata1iekat/GLM_invertebrate_traits_v1: GLM_invertebrate_traits_v1

description: Trait database of aquatic invertebrate traits assigned at the genus level for taxa found in floodplain wetlands of the Wolastoq | Saint John River, New Brunswick, Canada
description: {"references": ["Rideout N.K., Compson Z.C., Monk W.A., Bruce M.R., Hajibabaei M., Porter T.M., Wright M.T.G., Baird D.J. (2020). Deconstructing biodiversity-ecosystem function relationships: Filtering of macroinvertebrate traits in a large river floodplain. bioRxiv. https://doi.org/10.1101/2020.07.15.204008"]}
DOI: 10.5281/zenodo.3948532
title: Hippocampal Representation of Threat Features and Behavior in a Human Approach-Avoidance Conflict Anxiety Task: Unthresholded SPM Activation Maps

description: This dataset includes group-level results from multifold parametric analyses of a high-resolution fMRI approach-avoidance conflict anxiety task (n = 19). SPM Results are divided in primary analyses using a 8 mm FWHM smoothing kernel, and secondary (localization) anaylses using a 4 mm FWHM kernel. Parametric modulators of BOLD activation were set up with serial orthogonalization in the following order: P1: TP, TM, TP x TM P2: A, TP, TM, A x TP, A x TM, TP x TM, A x TP x TM P3: Two separate analyses for approach and avoidance trials. Order of modulators as in P1. Abbreviations: TP = threat probability TM = threat magnitude A = action (approach / avoidance) The study is reported in the following reference: Abivardi A.*<em>, </em>Khemka S.*, Bach D.R. (2020) Hippocampal Representation of Threat Features and Behavior in a Human Approach-Avoidance Conflict Anxiety Task (accepted for publication in Journal of Neuroscience) Citation for this dataset: https://doi.org/10.5281/zenodo.3893443.
DOI: 10.5281/zenodo.3893442
title: Hippocampal Representation of Threat Features and Behavior in a Human Approach-Avoidance Conflict Anxiety Task: Unthresholded SPM Activation Maps

description: This dataset includes group-level results from multifold parametric analyses of a high-resolution fMRI approach-avoidance conflict anxiety task (n = 19). SPM Results are divided in primary analyses using a 8 mm FWHM smoothing kernel, and secondary (localization) anaylses using a 4 mm FWHM kernel. Parametric modulators of BOLD activation were set up with serial orthogonalization in the following order: P1: TP, TM, TP x TM P2: A, TP, TM, A x TP, A x TM, TP x TM, A x TP x TM P3: Two separate analyses for approach and avoidance trials. Order of modulators as in P1. Abbreviations: TP = threat probability TM = threat magnitude A = action (approach / avoidance) The study is reported in the following reference: Abivardi A.*<em>, </em>Khemka S.*, Bach D.R. (2020) Hippocampal Representation of Threat Features and Behavior in a Human Approach-Avoidance Conflict Anxiety Task (accepted for publication in Journal of Neuroscience) Citation for this dataset: https://doi.org/10.5281/zenodo.3893443.
DOI: 10.5281/zenodo.3948568
title: Temperature series for 9 Scottish mountain sites, including generation code

description: Dataset and code supporting analysis of mountain hare phenology changes due to climate change. Underlying data: Met Office (2019): MIDAS Open: UK daily temperature data, v201908. Centre for Environmental Data Analysis, 30 October 2019. doi:10.5285/b37382e8c1e74b849831a5fa13afdcae. http://dx.doi.org/10.5285/b37382e8c1e74b849831a5fa13afdcae The hare site elevation data is from Ordnance Survey Terrain 50 (https://www.ordnancesurvey.co.uk/business-government/products/terrain-50). Contains OS data © Crown copyright and database right 2020
description: {"references": ["Met Office (2019): MIDAS Open: UK daily temperature data, v201908. Centre for Environmental Data Analysis, 30 October 2019. doi:10.5285/b37382e8c1e74b849831a5fa13afdcae. http://dx.doi.org/10.5285/b37382e8c1e74b849831a5fa13afdcae", "Burt, T. and Holden, J. Changing temperature and rainfall gradients in the British uplands. Climate Research, 45(1):57\u201370, 2010. https://www.jstor.org/stable/24861578", "R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/.", "Hadley Wickham (2017). tidyverse: Easily Install and Load the 'Tidyverse'. R package version 1.2.1. https://CRAN.R-project.org/package=tidyverse.", "Garrett Grolemund, Hadley Wickham (2011). Dates and Times Made Easy with lubridate. Journal of Statistical Software, 40(3), 1-25. http://www.jstatsoft.org/v40/i03/.", "Pebesma, E., 2018. Simple Features for R: Standardized Support for Spatial Vector Data. The R Journal 10 (1), 439-446, https://doi.org/10.32614/RJ-2018-009."]}
DOI: 10.5281/zenodo.3948567
title: Temperature series for 9 Scottish mountain sites, including generation code

description: Dataset and code supporting analysis of mountain hare phenology changes due to climate change. Underlying data: Met Office (2019): MIDAS Open: UK daily temperature data, v201908. Centre for Environmental Data Analysis, 30 October 2019. doi:10.5285/b37382e8c1e74b849831a5fa13afdcae. http://dx.doi.org/10.5285/b37382e8c1e74b849831a5fa13afdcae The hare site elevation data is from Ordnance Survey Terrain 50 (https://www.ordnancesurvey.co.uk/business-government/products/terrain-50). Contains OS data © Crown copyright and database right 2020
description: {"references": ["Met Office (2019): MIDAS Open: UK daily temperature data, v201908. Centre for Environmental Data Analysis, 30 October 2019. doi:10.5285/b37382e8c1e74b849831a5fa13afdcae. http://dx.doi.org/10.5285/b37382e8c1e74b849831a5fa13afdcae", "Burt, T. and Holden, J. Changing temperature and rainfall gradients in the British uplands. Climate Research, 45(1):57\u201370, 2010. https://www.jstor.org/stable/24861578", "R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/.", "Hadley Wickham (2017). tidyverse: Easily Install and Load the 'Tidyverse'. R package version 1.2.1. https://CRAN.R-project.org/package=tidyverse.", "Garrett Grolemund, Hadley Wickham (2011). Dates and Times Made Easy with lubridate. Journal of Statistical Software, 40(3), 1-25. http://www.jstatsoft.org/v40/i03/.", "Pebesma, E., 2018. Simple Features for R: Standardized Support for Spatial Vector Data. The R Journal 10 (1), 439-446, https://doi.org/10.32614/RJ-2018-009."]}
DOI: 10.21227/wv3x-3291
title: Human Leg Kinematics, Kinetics, and EMG during Phase-Shifting Perturbations at Varying Inclines

description: This dataset contains joint kinematics, kinetics, and EMG activity from an experimental protocol approved by the Institutional Review Board at the University of Texas at Dallas. This data was collected to evaluate the robustness of different parameterization variables during perturbations for application in robotic prosthetic legs. Ten able-bodied subjects self-selected a comfortable speed for walking on level (0 degree), +5 degree, and -5 degree inclines. Subjects walked at the self-selected speed for a minute without perturbations to produce a control dataset of unperturbed kinematics. From this control data, the average stance time was calculated for each subject to define a normalized time window between 0 and 80% of stance. Then, 100 uniformly distributed times were sampled from this window to determine the perturbation onset times, i.e., the amount of delay between heel strike and perturbation onset. For perturbation trials, subjects walked at the same speed for 20-25 minutes, broken into 5 sets of 4-5 minutes for each slope. During each trial, a 10-camera Vicon motion capture system recorded leg kinematics, while force plates in a Bertec split-belt treadmill recorded ground reaction forces, and a Delsys Trigno EMG system recorded muscle activation of the rectus femoris, biceps femoris, tibialis anterior, and gastrocnemius. Citation:R. Macaluso, K. Embry, D. Villarreal, R.D. Gregg, “Parameterizing Human Locomotion Across Quasi-Random Treadmill Perturbations and Inclines,” IEEE Transactions on Neural Systems and Rehabilitation Engineering
DOI: 10.13012/b2idb-0851257_v1
title: SocialMediaIE Tutorial Material for IC2S2 2020

description: Dataset to be for SocialMediaIE tutorial
DOI: 10.21227/4cwq-1p52
title: Human Leg Kinematics, Kinetics, and EMG during Phase-Shifting Perturbations at Varying Inclines

description: This dataset contains joint kinematics, kinetics, and EMG activity from an experimental protocol approved by the Institutional Review Board at the University of Texas at Dallas. This data was collected to evaluate the robustness of different parameterization variables during perturbations for application in robotic prosthetic legs. Ten able-bodied subjects self-selected a comfortable speed for walking on level (0 degree), +5 degree, and -5 degree inclines. Subjects walked at the self-selected speed for a minute without perturbations to produce a control dataset of unperturbed kinematics. From this control data, the average stance time was calculated for each subject to define a normalized time window between 0 and 80% of stance. Then, 100 uniformly distributed times were sampled from this window to determine the perturbation onset times, i.e., the amount of delay between heel strike and perturbation onset. For perturbation trials, subjects walked at the same speed for 20-25 minutes, broken into 5 sets of 4-5 minutes for each slope. During each trial, a 10-camera Vicon motion capture system recorded leg kinematics, while force plates in a Bertec split-belt treadmill recorded ground reaction forces, and a Delsys Trigno EMG system recorded muscle activation of the rectus femoris, biceps femoris, tibialis anterior, and gastrocnemius. Citation:R. Macaluso, K. Embry, D. Villarreal, R.D. Gregg, “Parameterizing Human Locomotion Across Quasi-Random Treadmill Perturbations and Inclines,” IEEE Transactions on Neural Systems and Rehabilitation Engineering
DOI: 10.5281/zenodo.3948659
title: GALA: gap-free chromosome-scale assembly with long reads

description: A.thaliana, C.elegans and Human assemblies produced by GALA software
DOI: 10.5281/zenodo.3948801
title: Rotors EGMs - Ravikumar 2020

description: Dataset for the work "Novel Mapping Techniques for Rotor Core Detection using Simulated Intracardiac Electrograms" submitted to Frontiers in Physiology Journal
DOI: 10.5281/zenodo.3948800
title: Rotors EGMs - Ravikumar 2020

description: Dataset for the work "Novel Mapping Techniques for Rotor Core Detection using Simulated Intracardiac Electrograms" submitted to Frontiers in Physiology Journal
DOI: 10.15152/qdb.236
title: QDB archive #236

description: This QDB archive contains data and model(s) from the following publication: Piir, G.; Sild, S.; Maran, U. Binary and multi-class classification for androgen receptor agonists, antagonists and binders. Chemosphere 2020, submitted.
DOI: 10.21227/j58p-2a60
title: New Proposed Overcurrent Relay Coordination for Microgrid Protection

description: These data are complementary to the paper: " New Proposed Overcurrent Relay Coordinationfor Microgrid Protection"The paper presents a protection of microgrids (MGs) through a proposed coordination of directional overcurrent relays (DOCRs). The new formulation is subject to restrictions of pre-established time intervals at each coordination point to guarantee the primary and backup functions of each relay; thus, the obtained time curve guarantees functional independence between the relays, like the other protection principles. Conventional coordination criteria are not applied since the setting of each relay is stand-alone. This coordination criterion has advantages during contingencies, topological changes, or during the formation of islands since it will only be necessary to update the setting in the affected relays, simplifying the implementation of on-line protection schemes. An on-line system is also presented for the dynamic detection of vulnerable protection zones due to the loss of sensitivity of the relays, as well as adjustments and temporary solutions as remedial action. Theresults show that the proposed method is feasible; in the power systems studied, the total operation time of the relays was less that of the conventional coordination method. Further simplification in the relay adjustment process under the different contingencies studied was obtained, improving the sensitivity for the various operating conditions in the test systems.
DOI: 10.21227/qn5c-1k68
title: New Proposed Overcurrent Relay Coordination for Microgrid Protection

description: These data are complementary to the paper: " New Proposed Overcurrent Relay Coordinationfor Microgrid Protection"The paper presents a protection of microgrids (MGs) through a proposed coordination of directional overcurrent relays (DOCRs). The new formulation is subject to restrictions of pre-established time intervals at each coordination point to guarantee the primary and backup functions of each relay; thus, the obtained time curve guarantees functional independence between the relays, like the other protection principles. Conventional coordination criteria are not applied since the setting of each relay is stand-alone. This coordination criterion has advantages during contingencies, topological changes, or during the formation of islands since it will only be necessary to update the setting in the affected relays, simplifying the implementation of on-line protection schemes. An on-line system is also presented for the dynamic detection of vulnerable protection zones due to the loss of sensitivity of the relays, as well as adjustments and temporary solutions as remedial action. Theresults show that the proposed method is feasible; in the power systems studied, the total operation time of the relays was less that of the conventional coordination method. Further simplification in the relay adjustment process under the different contingencies studied was obtained, improving the sensitivity for the various operating conditions in the test systems.
DOI: 10.5281/zenodo.3948852
title: Discrete flow cytometry from the Gradients 2016 cruise using a BD Influx Cell Sorter

description: The dataset consists of BD Influx-based analysis of phytoplankton populations and heterotrophic bacteria from discrete flow cytometry data collected during the Gradients 2016 (Gradients 1/KOK1606) oceanographic research cruise in the Northeast Pacific Ocean. The analysis includes cell abundance, forward light scatter, and pigment fluorescence of individual cells, including bacteria, picoeukaryotes, and the cyanobacteria Prochlorococcus and Synechococcus. Time is in UTC format, latitude and longitude are in decimal degrees, and depth is in meters. Further information can be found here: https://github.com/fribalet/FCSplankton
description: This work was supported by grants from the Simons Foundation (#574495 to FR, #329108, #426570SP and #549945 to EVA).
DOI: 10.5281/zenodo.3948853
title: Discrete flow cytometry from the Gradients 2017 cruise using a BD Influx Cell Sorter

description: The dataset consists of BD Influx-based analysis of phytoplankton populations and heterotrophic bacteria from discrete flow cytometry data collected during the Gradients 2017 (Gradients 2/MGL1704) oceanographic research cruise in the Northeast Pacific Ocean. The analysis includes cell abundance, forward light scatter, and pigment fluorescence of individual cells, including bacteria, picoeukaryotes and the cyanobacteria Prochlorococcus and Synechococcus. Time is in UTC format, latitude and longitude are in decimal degrees, and depth is in meters. Further information can be found here: https://github.com/fribalet/FCSplankton
description: This work was supported by grants from the Simons Foundation (#574495 to FR, #329108, #426570SP and #549945 to EVA).
DOI: 10.5281/zenodo.3948856
title: Discrete flow cytometry from the Gradients 2019 cruise using a BD Influx Cell Sorter

description: The dataset consists of BD Influx-based analysis of phytoplankton populations and heterotrophic bacteria from discrete flow cytometry data collected during the Gradients 2019 (Gradients 3/KM1906) oceanographic research cruise in the Northeast Pacific Ocean. The analysis includes cell abundance, forward light scatter, and pigment fluorescence of individual cells, including bacteria, picoeukaryotes, and the cyanobacteria Prochlorococcus and Synechococcus. Time is in UTC format, latitude and longitude are in decimal degrees, and depth is in meters. Further information can be found here: https://github.com/fribalet/FCSplankton
description: This work was supported by grants from the Simons Foundation (#574495 to FR, #329108, #426570SP and #549945 to EVA).
DOI: 10.17909/t9-v6kn-sj75
title: T Tau - Hubble ACS SBC F140LP

description: Visit-combined image from the F140LP filter on the Hubble ACS Solar Blind Channel.
DOI: 10.5281/zenodo.3948857
title: Discrete flow cytometry of underway samples from the Gradients 2019 cruise using a BD Influx Cell Sorter

description: The dataset consists of BD Influx-based analysis of phytoplankton populations from discrete flow cytometry data collected underway during the Gradients 2019 (Gradients 3/KM1906) oceanographic research cruise in the Northeast Pacific Ocean. The analysis includes cell abundance, forward light scatter, and pigment fluorescence of individual cells, including picoeukaryotes and the cyanobacteria Prochlorococcus and Synechococcus. Time is in UTC format, latitude and longitude are in decimal degrees, and depth is in meters. Further information can be found here: https://github.com/fribalet/FCSplankton
description: This work was supported by grants from the Simons Foundation (#574495 to FR, #329108, #426570SP and #549945 to EVA).
DOI: 10.5281/zenodo.3909881
title: Trace Gas and Meteorological Fields from WRF-LES

description: This dataset was generated for "A Statistical Evaluation of WRF-LES Trace Gas Dispersion Using Project Prairie Grass Measurements" (MWR, in review). It contains 10-minute averaged trace gas and meteorological fields from six WRF-LES simulations as well as the namelists used to generate the meteorological fields. Three of these simulations have strong surface heating and weak geostrophic winds ("SCBL"). The other three look at weak heating and strong geostrophic winds ("WCBL"). Three different resolutions are also examined for each set of forcing: coarse, moderate, and fine.
DOI: 10.17909/t9-m9fb-2e14
title: TESS Sector 19 Camera 2 CCD 3
DOI: 10.5281/zenodo.3948904
title: gCSI

description: gCSI PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3948904
DOI: 10.5281/zenodo.3948903
title: gCSI

description: gCSI PharmacoSet (PSet) generated by ORCESTRA. Metadata can be found on ORCESTRA at: http://orcestra.ca/10.5281/zenodo.3948904
DOI: 10.17632/8f3hpkhwcx.1
title: Shear property characterization of aramid paper and its application to the prediction of honeycomb behaviors

description: The stress-strain data of hybrid paper and the honeycomb obtained with the experiments are provided. With the stress-strain data of hybrid paper, the constitutive model of hybrid paper can be obtained and used in the finite element models to investigate the shear properties of the honeycomb. And then, the experiment results of the honeycomb can be used to validate the shear test of the paper.
DOI: 10.17632/8f3hpkhwcx.2
title: Shear property characterization of aramid paper and its application to the prediction of honeycomb behaviors

description: The stress-strain data of hybrid paper and the honeycomb obtained with the experiments are provided. With the stress-strain data of hybrid paper, the constitutive model of hybrid paper can be obtained and used in the finite element models to investigate the shear properties of the honeycomb. And then, the experiment results of the honeycomb can be used to validate the shear test of the paper.
DOI: 10.17632/nyz4y58jbt.1
title: Dataset of Agar Biopolymer Films: mechanical properties

description: We study the tensile properties of biopolymer films made from the seaweed biopolymer agar. We test whether a process with low capital costs can result in materials that compare favorably to commercial plastics. Tensile properties are key to assessing the applicability of biopolymer films to a range of single-use packaging, such as lightweight plastic bags and plastic films. We identify formulations that compare favorably to commercially available plastics, demonstrating the potential to address standard product niches. The complete set of formulations and their associated properties can be used to understand the broad range of performance characteristics that can be obtained using one process. Formulations were developed using a Design of Experiments (DoE) approach, following a full factorial mixture design using the methodology 2k where k is the number of factors considered at 2 levels. A neural network was trained to model the relationship between the mechanical properties of test samples and their composition. Our aim was to demonstrate the importance of such methods for modeling the properties of bioplastics produced at local and regional scales where data may vary with heterogeneous sources of feedstock and local process conditions. The process of fabrication consisted of adding agar to a mixture of glycerin and water and heating to a temperature of 90°C using a magnetic stirrer and heater. The mixture was then poured into silicone molds, where it dried over a period of approximately three days. 32 formulations were fabricated and tested, with varying concentrations of the ingredients agar, glycerin, and water. Tensile tests were performed on an INSTRON universal test machine. Mechanical properties analyzed were ultimate tensile strength, Young's modulus, and elongation at break. A uniaxial tensile test was used to evaluate the stress and the deformability of the material. An average of 5 specimens were tested for each formulation, and the resulting data was normalized and interpolated with deformation averaged to obtain the main curve. The dataset contains the following: (1) the principle table with the formulation mixtures, calculated tensile properties, dimensions of each sample prepared for testing, and relevant process variables; (2) a diagram specifying the dimensions for the die used to cut each sample for tensile testing; (3) the abbreviated table used as input for the neural network including the sample formulations and tensile properties, and (4) the python script used for running our neural network model.
DOI: 10.17632/8f3hpkhwcx.3
title: Shear property characterization of aramid paper and its application to the prediction of honeycomb behaviors

description: The stress-strain data of hybrid paper and the honeycomb obtained with the experiments are provided. With the stress-strain data of hybrid paper, the constitutive model of hybrid paper can be obtained and used in the finite element models to investigate the shear properties of the honeycomb. And then, the experiment results of the honeycomb can be used to validate the shear test of the paper.
DOI: 10.17632/f9kkszrtch.1
title: Growth Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging. Parker et al

description: tRNA charging Northern blot to demonstrate increased charging of tRNA with cognate aaRS overproduction. One .tif file of multiple blots imaged together. Intensity was changed in figure to aid viewing. In order from left to right: Probed for argACG tRNA: Lane 1 - Deacylated control sample Lane 2 - WT 168 sample Lane 3 - ArgS overproduction sample Lane 4 - ArgS overproduction sample Replicate Lane 5 - SerS overproduction sample Probed for serGCU tRNA: Lane 1 - Deacylated control sample Lane 2 - WT 168 sample Lane 3 - SerS overproduction sample Lane 4 - IleS overproduction sample Probed for ileCAU tRNA: Lane 1 - Deacylated control sample Lane 2 - WT 168 sample Lane 3 - IleS overproduction sample Lane 4 - LeuS overproduction sample Probed for leuUAA tRNA: Lane 1 - Deacylated control sample Lane 2 - WT 168 sample Lane 3 - LeuS overproduction sample Lane 4 - IleS overproduction sample