cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11728875
title: Rapid SVA detection using MinION sequencing

description: Sanger sequencing for SVA clinical samples to provide reference for minion sequencing.sample 1 to 8: clinical sample viral copies high to low.Manuscript in preparation
DOI: 10.6084/m9.figshare.11728875.v1
title: Rapid SVA detection using MinION sequencing

description: Sanger sequencing for SVA clinical samples to provide reference for minion sequencing.sample 1 to 8: clinical sample viral copies high to low.Manuscript in preparation
DOI: 10.6084/m9.figshare.11728866
title: Distribution of taste sensitivities in Chile

description: Distribution of taste sensitivities in Chile
DOI: 10.6084/m9.figshare.11728866.v1
title: Distribution of taste sensitivities in Chile

description: Distribution of taste sensitivities in Chile
DOI: 10.6084/m9.figshare.11728848
title: 3. Figure 4_All Raw Data Files

description: Raw data, Figure 4, Qi et al., Nat Comm 2017
DOI: 10.6084/m9.figshare.11728863
title: Systematic Review of Social Network Methods in Developmental Psychology Dataset

description: These data were collected by Jennifer Watling Neal at Michigan State University in early 2019. They are described in detail in the following publication:<br><br><b>Neal, J.W. (in press). A systematic review of social network methods in high impact developmental psychology journals. Social Development.</b><br>
DOI: 10.6084/m9.figshare.11728848.v1
title: 3. Figure 4_All Raw Data Files

description: Raw data, Figure 4, Qi et al., Nat Comm 2017
DOI: 10.6084/m9.figshare.11728794
title: Table S3. fault energy, grain size calcs.xlsx

description: none
DOI: 10.6084/m9.figshare.11726631
title: Probabilistic seismic hazard assessment for circular area using Excel

description: This is a Microsoft Excel spreadsheet to compute the probabilistic seismic hazard for a circular area of uniform seismicity characterised by a Gutenberg-Richter relation and using a simple ground motion prediction equation. The circular area is split into 10 annuli to integrate over the area. The hazard curve is computed as well as various associated parameters (e.g. mean disaggregated scenario).<br>It is an extension of my spreadsheet for PSHA for a point source, which is also available here.
DOI: 10.6084/m9.figshare.11726307
title: A weakening rheology of dry granular flows with extensive brittle grain damage

description: <b>A weakening rheology of dry granular flows with extensive brittle grain damage</b><br>
DOI: 10.6084/m9.figshare.11726271
title: data file without curve.xlsx

description: <b>Steady-state shear resistance and viscosity of fast dry granular flows under high normal stress</b>
DOI: 10.6084/m9.figshare.11726517.v2
title: CU-BEMS: Smart Building Electricity Consumption and Indoor Environmental Sensor Datasets

description: This is the release of the detailed building operation data, including electricity consumption and indoor environmental data, of the seven-story 11,700m2 office building located in Bangkok, Thailand. The electricity consumption data (kW) are that of individual air conditioning units, lighting, and plug loads in each of the 33 zones of the building. The indoor environmental sensor data comprise temperature (degree C), relative humidity (%), and ambient light (lux) measurements of the same zones. The entire datasets are available at one-minute intervals for the period for 18 months from July 1, 2018, to December 31, 2019. <br>
DOI: 10.6084/m9.figshare.11726517
title: CU-BEMS, smart building electricity consumption and indoor environmental sensor datasets.

description: This is the release of the detailed building operation data, including electricity consumption and indoor environmental data, of the seven-story 11,700m2 office building located in Bangkok, Thailand. The electricity consumption data (kW) are that of individual air conditioning units, lighting, and plug loads in each of the 33 zones of the building. The indoor environmental sensor data comprise temperature (degree C), relative humidity (%), and ambient light (lux) measurements of the same zones. The entire datasets are available at one-minute intervals for the period for 18 months from July 1, 2018, to December 31, 2019. <br>
DOI: 10.6084/m9.figshare.11726517.v5
title: CUBEMS, smart building electricity consumption and indoor environmental sensor dataset.

description: This is the release of the detailed building operation data, including electricity consumption and indoor environmental data, of the seven-story 11,700m2 office building located in Bangkok, Thailand. The electricity consumption data (kW) are that of individual air conditioning units, lighting, and plug loads in each of the 33 zones of the building. The indoor environmental sensor data comprise temperature (degree C), relative humidity (%), and ambient light (lux) measurements of the same zones. The entire datasets are available at one-minute intervals for the period for 18 months from July 1, 2018, to December 31, 2019. <br>
DOI: 10.6084/m9.figshare.11726229
title: FaceForensics.zip

description: Faces 64x64 extracted from FaceForensics++<br>
DOI: 10.6084/m9.figshare.11725974
title: the study data set

description: There are 16 columns in the current data set, including geographic codes, projection coordinates, latitude and longitude coordinates, time, the climatic data, consisting of the monthly average temperature (AT), relative humidity (RH), air pressure (AP), wind speed (AW) and monthly total precipitation (TP), hand, foot, and mouth disease cases, population sizes of children under 9 years old, the adjusted cumulative incidence (CI) values and their natural logarithm.
DOI: 10.6084/m9.figshare.11725974.v1
title: the study data set

description: There are 16 columns in the current data set, including geographic codes, projection coordinates, latitude and longitude coordinates, time, the climatic data, consisting of the monthly average temperature (AT), relative humidity (RH), air pressure (AP), wind speed (AW) and monthly total precipitation (TP), hand, foot, and mouth disease cases, population sizes of children under 9 years old, the adjusted cumulative incidence (CI) values and their natural logarithm.
DOI: 10.6084/m9.figshare.11722467
title: S1_XPS

description: X-ray photoelectron spectroscopy data acquired for epitaxial graphene on silicon carbide intercalated with Ga, In, or Sn.<br>"All Elements_O2HeEG_annealed at intercalation conditions" contains spectra for a sample of epitaxial graphene on silicon carbide (EG/SiC) that was exposed to a 50W O2/He plasma for 60s and subsequently annealed at 800C, 300 Torr for 30 minutes under 50 sccm Ar. <br>"All Elements_O2HeEG_SiC_HOPG_AsGrownEG_HydrogEG_GaIntO2HeEG_GaIntAsGrownEG" contains spectra for the following samples: O2/He plasma treated EG/SiC, bare SiC, highly ordered pyrolytic graphite (HOPG), as-grown EG/SiC, hydrogenated (or hydrogen intercalated) EG/SiC, Ga-intercalated, O2/He plasma treated EG/SiC, and Ga-intercalated as-grown EG/SiC. This file contains C 1s, O 1s, Si 2p, Ga 3d, and survey spectra.<br>"InSnInterc" contains O 1s, Si 2p ,C 1s, Sn 3d and In 3d spectra for Sn and In-intercalated, O2/He plasma treated EG/SiC.<br>
DOI: 10.6084/m9.figshare.11722437
title: S18_transport_large step

description: Low-temperature transport measurements for parallel and perpendicular directions in Ga-intercalated sample with large step heights.<br>
DOI: 10.6084/m9.figshare.11722431
title: S17_BKT transition_small step

description: BKT transition extracted for parallel and perpendicular current directions in Ga-intercalated sample with small step heights. <br>
DOI: 10.6084/m9.figshare.11722437.v1
title: S18_transport_large step

description: Low-temperature transport measurements for parallel and perpendicular directions in Ga-intercalated sample with large step heights.<br>
DOI: 10.6084/m9.figshare.11722431.v1
title: S17_BKT transition_small step

description: BKT transition extracted for parallel and perpendicular current directions in Ga-intercalated sample with small step heights. <br>
DOI: 10.6084/m9.figshare.11722428
title: S16_STMSTS

description: Scanning tunneling microscopy and spectroscopy of Ga-intercalated sample. <br>
DOI: 10.6084/m9.figshare.11722422
title: S15_transport_small step

description: Low-temperature transport measurements of intercalated-Ga samples with small step heights.<br>
DOI: 10.6084/m9.figshare.11722422.v1
title: S15_transport_small step

description: Low-temperature transport measurements of intercalated-Ga samples with small step heights.<br>
DOI: 10.6084/m9.figshare.11721756
title: S8_LEED

description: Low-energy electron diffraction of EG/SiC and metal-intercalated EG/SiC. <br>
DOI: 10.6084/m9.figshare.11721756.v1
title: S8_LEED

description: Low-energy electron diffraction of EG/SiC and metal-intercalated EG/SiC. <br>
DOI: 10.6084/m9.figshare.11720616
title: Proteome database of Citrobacter freundii complex sp CFNIH9

description: A member of the gut microbiota, <i>Citrobacter freundii</i> is a facultative anaerobic Gram-negative bacterium that also inhabits the soil, water and other environmental matrixes. Able to cause nosocomial infections of the urinary tract, respiratory tract and blood of humans, <i>C. freundii</i> has received attention as an emerging opportunistic pathogen of humans. This work sought to provide fundamental information about the native proteome of this bacterium. Using an in-house MATLAB proteome analysis software, the UniProt proteome of <i>C. freundii</i> complex sp CFNIH9 was parsed to yield a proteome database comprising protein name, amino acid sequence, number of residues, molecular weight and nucleotide sequence of protein. Overall, the presented proteome database should provide guidance on the proteomic repertoire of <i>C. freundii</i> for understanding its multifaceted roles in mediating different processes in the human gastrointestinal tract and in disease. <br><br>
DOI: 10.6084/m9.figshare.11720616.v1
title: Proteome database of Citrobacter freundii complex sp CFNIH9

description: A member of the gut microbiota, <i>Citrobacter freundii</i> is a facultative anaerobic Gram-negative bacterium that also inhabits the soil, water and other environmental matrixes. Able to cause nosocomial infections of the urinary tract, respiratory tract and blood of humans, <i>C. freundii</i> has received attention as an emerging opportunistic pathogen of humans. This work sought to provide fundamental information about the native proteome of this bacterium. Using an in-house MATLAB proteome analysis software, the UniProt proteome of <i>C. freundii</i> complex sp CFNIH9 was parsed to yield a proteome database comprising protein name, amino acid sequence, number of residues, molecular weight and nucleotide sequence of protein. Overall, the presented proteome database should provide guidance on the proteomic repertoire of <i>C. freundii</i> for understanding its multifaceted roles in mediating different processes in the human gastrointestinal tract and in disease. <br><br>
DOI: 10.6084/m9.figshare.11720289
title: PRISMA-P checklist and flow chart for ‘What are the Outcomes of Core Decompression in Patients with Avascular Necrosis? Protocol for a Systematic Review’.

description: Systematic reviews and meta-analyses (PRISMA) and protocols (PRISMA-P)
DOI: 10.6084/m9.figshare.11720289.v1
title: PRISMA-P-checklist.doc

description: Systematic reviews and meta-analyses (PRISMA) and protocols (PRISMA-P)
DOI: 10.6084/m9.figshare.11720289.v2
title: PRISMA-P checklist and flow chart for ‘What are the Outcomes of Core Decompression in Patients with Avascular Necrosis? Protocol for a Systematic Review’.

description: Systematic reviews and meta-analyses (PRISMA) and protocols (PRISMA-P)
DOI: 10.6084/m9.figshare.11720199
title: SDB in HDP and fetal outcomes.xlsx

description: sleep-disordered breathing in gestational hypertension and preeclampsia: impact on maternal and fetal outcomes.
DOI: 10.6084/m9.figshare.11720199.v1
title: SDB in HDP and fetal outcomes.xlsx

description: sleep-disordered breathing in gestational hypertension and preeclampsia: impact on maternal and fetal outcomes.
DOI: 10.6084/m9.figshare.11720028
title: experimental data

description: data
DOI: 10.6084/m9.figshare.11720028.v1
title: experimental data

description: data
DOI: 10.6084/m9.figshare.11719968
title: Monitoring dimeric status of IZUMO1 during the acrosome reaction in living spermatozoon

description: The acrosome reaction (AR) is indispensable for successful spermatozoon-oocyte fusion. Recent studies have indicated that sperm IZUMO1 gradually gathers in the equatorial segment (EQ), which is the initiation site of sperm-egg fusion, after the AR. In addition, by examining the binding process of oocytes and <i>Izumo1</i>-expressing cultured cells to reconstitute the early steps of fertilization, we previously demonstrated that robust IZUMO1-dependent adhesion specifically occurs at the contact site along with the dimerization of IZUMO1. However, when IZUMO1 dimerizes after the AR in living spermatozoon is unknown. Here, we report dynamics of IZUMO1 dimerization during the AR in spermatozoa by combining transgenic mice and time-lapse imaging using a set of bimolecular fluorescence complementation (BiFC) probes. Surprisingly, dimeric IZUMO1 was already formed at the acrosomal cap region before the AR and redistributed into the EQ after the AR. We categorized the translocation of the dimer into two types: Type 1, the near-simultaneous appearance of BiFC signals with IZUMO1-mCherry; and Type 2, the delayed formation of dimer in the EQ. Those findings suggest that, before encountering oocytes, spermatozoa are prepared to boost their affinity with JUNO.
DOI: 10.6084/m9.figshare.11719968.v1
title: Monitoring dimeric status of IZUMO1 during the acrosome reaction in living spermatozoon

description: The acrosome reaction (AR) is indispensable for successful spermatozoon-oocyte fusion. Recent studies have indicated that sperm IZUMO1 gradually gathers in the equatorial segment (EQ), which is the initiation site of sperm-egg fusion, after the AR. In addition, by examining the binding process of oocytes and <i>Izumo1</i>-expressing cultured cells to reconstitute the early steps of fertilization, we previously demonstrated that robust IZUMO1-dependent adhesion specifically occurs at the contact site along with the dimerization of IZUMO1. However, when IZUMO1 dimerizes after the AR in living spermatozoon is unknown. Here, we report dynamics of IZUMO1 dimerization during the AR in spermatozoa by combining transgenic mice and time-lapse imaging using a set of bimolecular fluorescence complementation (BiFC) probes. Surprisingly, dimeric IZUMO1 was already formed at the acrosomal cap region before the AR and redistributed into the EQ after the AR. We categorized the translocation of the dimer into two types: Type 1, the near-simultaneous appearance of BiFC signals with IZUMO1-mCherry; and Type 2, the delayed formation of dimer in the EQ. Those findings suggest that, before encountering oocytes, spermatozoa are prepared to boost their affinity with JUNO.
DOI: 10.6084/m9.figshare.11719845
title: Proteome database of Carnobacterium maltaromaticum LMA 28

description: Able to grow anaerobically, <i>Carnobacterium maltaromaticum</i> is not known to cause disease in humans. This work sought to provide fundamental proteomic information of this Gram-positive bacterium through parsing its UniProt proteome file using an in-house MATLAB proteome analysis software. The resulting proteome database comprises protein name, amino acid sequence, number of residues of protein, molecular weight and nucleotide sequence of protein. Such information should be useful in molecular cloning workflow seeking to identify the function of particular protein in the species or for genome editing task in understanding function of genes in a whole-cell context. <br><br>
DOI: 10.6084/m9.figshare.11719842
title: Longitudinal change of cervical artificial disc motion following replacement

description: Even though implanted segment maintains its motion for some length of time, we could assume that an artificial disc would have limited life expectancy correlated with decline of extension angle.
DOI: 10.6084/m9.figshare.11719845.v1
title: Proteome database of Carnobacterium maltaromaticum LMA 28

description: Able to grow anaerobically, <i>Carnobacterium maltaromaticum</i> is not known to cause disease in humans. This work sought to provide fundamental proteomic information of this Gram-positive bacterium through parsing its UniProt proteome file using an in-house MATLAB proteome analysis software. The resulting proteome database comprises protein name, amino acid sequence, number of residues of protein, molecular weight and nucleotide sequence of protein. Such information should be useful in molecular cloning workflow seeking to identify the function of particular protein in the species or for genome editing task in understanding function of genes in a whole-cell context. <br><br>
DOI: 10.6084/m9.figshare.11719812
title: Additional file 4 of High-salt diet does not boost neuroinflammation and neurodegeneration in a model of α-synucleinopathy

description: Additional file 4: Tables S1. Cytokine and chemokine protein levels in forebrain. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test. Tables S2. Cytokine and chemokine protein levels in midbrain. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test. Tables S3. Cytokine and chemokine protein levels in cerebellum. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test. Tables S4. Cytokine and chemokine protein levels in brainstem. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test.
DOI: 10.6084/m9.figshare.11719812.v1
title: Additional file 4 of High-salt diet does not boost neuroinflammation and neurodegeneration in a model of α-synucleinopathy

description: Additional file 4: Tables S1. Cytokine and chemokine protein levels in forebrain. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test. Tables S2. Cytokine and chemokine protein levels in midbrain. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test. Tables S3. Cytokine and chemokine protein levels in cerebellum. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test. Tables S4. Cytokine and chemokine protein levels in brainstem. The table represent the concentrations (pg/mg total protein) of the different cytokines and chemokines measured in forebrain of control and MSA mice fed with normal or high salt diet. Data are presented as mean ± SD. p-values where obtained by two-way ANOVA with Bonferroni’s post hoc test.
DOI: 10.6084/m9.figshare.11719803
title: Additional file 3 of Characterization of the plant homeodomain (PHD) reader family for their histone tail interactions

description: Additional file 3: Table S2. Histone Peptide Microarray Results. Excel Tab Peptide List is a compiled list of the entire 293 histone peptide library with amino acid sequence ranges. Excel Tab Peptide Array Grid Map is a table representing the pattern in which peptides have been printed for the peptide microarray. Each number corresponds to the peptide number designated in Peptide List. Excel Tab Average Signals is a compiled set of binding data: chromatin reader at 0.5 Î¼M vs. entire 293 peptide library. Data is presented as the average and standard deviation of 4 replicates. The average signals are colored to indicate signal intensity with green being strong and white being weak/low. Excel Tab Array Heatmap contains a condensed form of Average Signals data displaying an average of 4 replicates for each chromatin reader tested and individually formatted to demonstrate binding specificity. Key: red= stronger relative binding; blue = weaker relative binding. Excel Tab Array info summary is a table summarizing the domains, sequence coverage, array signal range, and noise for each of the GST-tagged readers assayed on the peptide microarrays.
DOI: 10.6084/m9.figshare.11719806
title: Additional file 4 of Characterization of the plant homeodomain (PHD) reader family for their histone tail interactions

description: Additional file 4: Table S3. dCypher Results. Excel Tab Peptide Phase A is a compiled set of binding data: chromatin reader titration vs. several peptide targets. Data is presented as raw Alpha counts in duplicates at each concentration tested. Excel Tab Peptide Phase B is a compiled set of binding data: chromatin reader at optimized concentrations vs. entire 293 peptide library. Data is presented as the average and standard deviation of duplicates. Excel Tab Peptide Phase B Heatmap contains a condensed form of Peptide Phase B data displaying an average of duplicates for each chromatin reader tested and individually formatted to demonstrate binding specificity. Key: red = strong binding; blue = weak/no binding.
DOI: 10.6084/m9.figshare.11719803.v1
title: Additional file 3 of Characterization of the plant homeodomain (PHD) reader family for their histone tail interactions

description: Additional file 3: Table S2. Histone Peptide Microarray Results. Excel Tab Peptide List is a compiled list of the entire 293 histone peptide library with amino acid sequence ranges. Excel Tab Peptide Array Grid Map is a table representing the pattern in which peptides have been printed for the peptide microarray. Each number corresponds to the peptide number designated in Peptide List. Excel Tab Average Signals is a compiled set of binding data: chromatin reader at 0.5 Î¼M vs. entire 293 peptide library. Data is presented as the average and standard deviation of 4 replicates. The average signals are colored to indicate signal intensity with green being strong and white being weak/low. Excel Tab Array Heatmap contains a condensed form of Average Signals data displaying an average of 4 replicates for each chromatin reader tested and individually formatted to demonstrate binding specificity. Key: red= stronger relative binding; blue = weaker relative binding. Excel Tab Array info summary is a table summarizing the domains, sequence coverage, array signal range, and noise for each of the GST-tagged readers assayed on the peptide microarrays.