cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.59019
title: Shadow Detection/Texture Segmentation Computer Vision Dataset

description: A simple computer vision dataset for shadow detection and texture analysis, specifically created to help test shadow detection algorithms (and texture segmentation algorithms) for mobile robots - that is, shadow detection with an <em>active (moving) camera</em>.

The dataset is focused around texture analysis, so each image sequence contains shadows moving in front of a number of various textured surfaces. The dataset contains four main subfolders: "active", "artificial", "kondo", and "static". The "static" folder contains ground-truthed image sequences of textured surfaces with shadows moving over them, and the "active" folder contains ground-truthed image sequences of a camera travelling over textured surfaces. The "artificial" folder contains a computer-generated 3D scene with computer-generated ground truth, but note that texture is absent from all images within. Finally, the "kondo" folder contains a series of extremely challenging images captured from a webcam mounted to a Kondo bipedal robot. This final dataset is challenging because it contains a high level of noise, flicker and interference from electrical lighting, and the poor lighting conditions make for complex shadows with large penumbrae.
DOI: 10.5281/zenodo.6809296
title: The effect of co-location on human communication networks

description: Representative dataset for "The effect of co-location on human communication networks." The files are serialized python objects pickled using python 3.8. dist_dict_* contains data on the pairwise distance between researchers, while undir_semiactive_* contains networks representing daily email counts between researchers.
DOI: 10.5281/zenodo.6814642
title: Automated systematic evaluation of cryo-EM specimens with SmartScope - Training data for square detector

description: Training data for square detector<br> ========================= This dataset includes 26 images.<br> Squares are annotated in COCO format. The following pre-processing was applied to each image:<br> * Auto-orientation of pixel data (with EXIF-orientation stripping) The following augmentation was applied to create 1 versions of each source image:<br> * 50% probability of horizontal flip<br> * Equal probability of one of the following 90-degree rotations: none, clockwise, counter-clockwise
DOI: 10.6084/m9.figshare.20412639.v1
title: High-content imaging data

description: # Scope These are microscopy image datasets of a a primary screen and two secondary siRNA screens for histone regulators in the breast cancer cell line MDA-MD-231. The datset is part of an article by Bruhn et al., 2022 (Communications Biology). <br> # Associated sample information For each screen, a separate sample map is provided in tab-separated format. The "dataset" column designates the folder in which the associated data are stored. Other columns indicate the stainings (channels), the siRNA targets. <br> # Folder and file structure Each of the 3 screening folders contains one subfolder per screening plate. Each plate folder contains one subfolder per column group that was acquired within a single run. Each column group folder contains one subfolder per optical field with the nomenclature OPTICALFIELD_WELL Each OPTICALFIELD_WELL folder contains one subfolder per channel Each channel folder contains a subfolder "stack1" in which the image is stored in ets format (frame_t_0.ets) <br> # Additional information Detailed technical information on sample preparation and image evaluation can be found in the associated article.
DOI: 10.6084/m9.figshare.20626494
title: Supplementary Material for: Influence of Frailty and Life Expectancy on Guideline Adherence and Outcomes in Cutaneous Squamous Cell Carcinoma of the Head and Neck: A Prospective Pilot Study

description: <b><i>Background:</i></b> Cutaneous squamous cell carcinoma is the second most common malignancy of the skin, often occurring in older patients and in the head and neck area (cSCCHN). Age, life expectancy, and frailty are not taken into consideration by current guidelines. <b><i>Objectives:</i></b> The objective of this study was to evaluate the influence of frailty and life expectancy on guideline deviation, treatment outcomes, and quality of life (QoL) after treatment in patients with cSCCHN. <b><i>Methods:</i></b> Patients with cSCCHN were prospectively included. A geriatric assessment was performed, including the Geriatric 8 (G8), Groningen Frailty Indicator, and Timed Up and Go test (TUG). The Lee index was used to predict a limited life expectancy, and the Adult Comorbidity Evaluation-27 was used as a comorbidity index. QoL was assessed by the Basal and Squamous cell carcinoma Quality of Life (BaSQoL) questionnaire at three time points. <b><i>Results:</i></b> Seventy-seven patients with cSCCHN were included. Frail patients had significantly more high-risk tumours. Guideline deviation occurred in 7.8% and was more common in patients who were frail (G8), with high-risk tumours (≥T2), with a limited life expectancy or an increased TUG. Guideline deviation did not lead more often to progression of disease in our study. No predictors for post-operative complications were found. BaSQoL subscores were very low at each time point and did not change significantly with time in the total group. Frail patients reported more fear of recurrence or new tumours 3 months after treatment, and less concern about other people’s skin 6 months after treatment, compared to non-frail patients. Complication rate, gender, or guideline deviation did not affect any subscale scores. <b><i>Conclusions:</i></b> Assessment of frailty and life expectancy can guide physicians and patients in treatment decisions. Deviation from guidelines towards less aggressive treatment schedules can be considered in frail patients with a limited life expectancy, since it did not negatively affect short-term outcomes or QoL in patients with cSCCHN in our study. However, these results should be confirmed by other, larger prospective studies with a longer follow-up period.
DOI: 10.6084/m9.figshare.20709268
title: Supplementary Material for: The Cutting-EDGE: Biliary Intervention in Altered Anatomy

description: Medicine
DOI: 10.7303/syn27051276
title: IMPACT Mania and Psychosis Screening
DOI: 10.5281/zenodo.6774314
title: Source Data for "Forced and spontaneous symmetry breaking in cell polarization."

description: Source Data for Figures 2-4
DOI: 10.6084/m9.figshare.20553711
title: Supplementary Material for: Validity and Reliability of Two Digital Wound Measurement Tools after Surgery in Patients with Hidradenitis Suppurativa

description: <b><i>Background:</i></b> After excision surgery in patients with hidradenitis suppurativa (HS), wounds are usually left open for secondary intention healing. To evaluate wound healing, reliable wound measurement is important. However, digital wound measurement tools for measuring the surface area are validated for small wounds located on flat or mildly convex body surfaces in studies, often powered inadequately. Up until now, a validated digital measurement tool to accurately measure wounds on all body surfaces, including the intertriginous areas, was not available. <b><i>Objectives:</i></b> The aim of this study was to validate two digital wound measurement tools for the measurement of the surface area of larger and concave wounds, using surgical wounds in patients with HS. <b><i>Methods:</i></b> This prospective observational validation study included consecutive patients with HS undergoing excision surgery in the Department of Dermatology of the Erasmus University Medical Center, Rotterdam. Wound measurements using a ruler, the tracing method, the inSight® 3-dimensional (3D) device, and the ImitoWound app were performed by three investigators. The intraclass correlation coefficients (ICCs) for concurrent validity and the intra- and inter-rater reliability were analyzed. The standard error of measurement (SEm) and minimal detectable change were calculated, and Bland-Altman plots were constructed to determine the limits of agreement. <b><i>Results:</i></b> Twenty patients with a total of 52 wounds were included. The wounds had a mean surface of 18.7 cm<sup>2</sup>. The inSight® 3D device showed an ICC of 0.987 for concurrent validity, 0.998 for intra-rater reliability, and 0.997 for inter-rater reliability. The ICCs from the ImitoWound application were 0.974, 0.978, and 0.964 for concurrent validity, intra-rater reliability, and inter-rater reliability, respectively. The SEms for intra- and inter-rater reliability were 0.95 cm<sup>2</sup> and 1.11 cm<sup>2</sup> for the inSight® 3D device and 3.33 cm<sup>2</sup> and 3.51 cm<sup>2</sup> for the ImitoWound app, respectively. <b><i>Conclusion:</i></b> Both the inSight® 3D device and the ImitoWound app demonstrated excellent concurrent validity and reliability for the surface measurements of concave wound, enabling these tools to be used reliably in clinical research and daily practice. Furthermore, it paves the way for broader application, such as telemonitoring of wound care at home.
DOI: 10.17632/56xm2x9bm3.1
title: Survey data for analysis on home energy management systems
DOI: 10.25345/c5qw00
title: MassIVE MSV000088560 - Bottom-up MS of soluble MAC released from bacteria
title: Human serum was treated with different Gram-positive and Gram-negative bacterial strains. The whole serum or sMAC isolated from serum were then separated by size-exclusion chromatography (SEC) and the fractions were analyzed by Bottom-up MS.
DOI: 10.25345/c5sb50
title: MassIVE MSV000086161 - GNPS - LC-MS/MS data from 337 Medicinal Plants listed in Korean Pharmacopeia
title: LC-MS/MS data from 337 Medicinal Plants listed in Korean Pharmacopeia. Acquired in both of Positive and Negative ion mode.
DOI: 10.5281/zenodo.6424245
title: DATASET: Using auxiliary electrochemical working electrodes as probe during contact glow discharge electrolysis: A proof of concept study

description: This project contains all the data shown in the figures of the manuscript (and the supporting information) entitled:<br> 'Using auxiliary electrochemical working electrodes as probe during contact glow discharge electrolysis: A proof of concept study'<br> (doi:10.26434/chemrxiv-2022-0v5sc). The data to each figure is provided in a subfolder where each curve is stored as a single CSV.<br> The filenames contain labels describing the curves.
DOI: 10.5281/zenodo.6979591
title: Evaluating Uncertainty in Aerosol Forcing of Tropical Precipitation Shifts

description: This dataset contains simplified data and code to reproduce the main figures in "Evaluating Uncertainty in Aerosol Forcing of Tropical Precipitation Shifts" accepted for publication in Earth System Dynamics, 2022, same authors. A Jupyter notebook and csv data files are provided in each folder to reproduce the respective figure.
DOI: 10.6084/m9.figshare.20549595
title: Supplementary Material for: Treatment Experiences with Intravenous Immunoglobulins, Ixekizumab, Dupilumab, and Anakinra in Netherton Syndrome: A Case Series

description: <b><i>Background:</i></b> Netherton syndrome (NS) is a rare potential life-threatening disorder that causes severe defects to the skin barrier. No effective treatment options are available for patients with NS and current therapy is mostly supportive. The effects of intravenous immunoglobulins (IVIGs), ixekizumab, and dupilumab have scarcely been reported. Additionally, the role of anakinra in patients with NS has never been investigated. <b><i>Objectives:</i></b> The objective was to report our experiences of treatment with IVIG, ixekizumab, dupi­lumab, and anakinra in patients with NS. <b><i>Methods:</i></b> A retrospective case series, including 5 patients with NS, was performed in a tertiary referral hospital between 2016 and 2021. Patients were treated with IVIG, ixekizumab, dupilumab, and/or anakinra. Long-term experiences with treatment regimens and adverse events requiring medical attention were reported. <b><i>Results:</i></b> IVIG, ixekizumab, dupilumab, and anakinra were well tolerated with no severe adverse events. The 2 patients that received IVIG showed clinical response for 6 months and 2.5 years. Ixekizumab was effective in 1 of our patients for 3.5 years, while in another patient ixekizumab lost its effect after 1.5 years. Dupilumab treatment did not result in persistent improvement of NS-related skin symptoms in 1 patient. Anakinra showed physician-assessed clinical response during the first months of treatment in 4 patients with NS. During anakinra treatment, no changes in blood levels of IL-1β, IL-6, and TNF-α levels were measured at routine blood examinations. <b><i>Conclusions:</i></b> This case series suggests that the use of IVIG, ixekizumab, dupilumab, and anakinra in NS is safe and moderately effective on the short term. On the long term, a decline in effect was observed. Our experiences may help clinicians and researchers to provide adequate care and develop treatment for these severely affected patients. More international research, especially on the long term, is needed to determine if and which patients benefit most from the emerging therapies for NS.
DOI: 10.6084/m9.figshare.20653974
title: Supplementary Material for: Pilot Study to Evaluate a New Method for Endotracheal Administration of Surfactant in Neonatal Respiratory Distress Syndrome: Fiberscope Assisted Surfactant Therapy (FAST)

description: <b><i>Introduction:</i></b> Currently, INSURE (Intubation-Surfactant-Extubation) and LISA (Less Invasive Surfactant Administration) are two recommended techniques for surfactant delivery to newborns with respiratory distress syndrome. The aim of this study was to evaluate the feasibility, safety, tolerability of a new technique of surfactant administration in newborns without anesthesia or laryngoscopy: Fiberscope Assisted Surfactant Therapy (FAST). <b><i>Methods:</i></b> This monocentric, prospective, nonrandomized, pilot feasibility study was conducted from January to December 2021. Spontaneously breathing infants born ≥28 weeks gestational age with respiratory distress syndrome received surfactant by a 1.5 French catheter inserted in the trachea using a flexible endoscope without anesthesia, while maintaining a continuous positive expiratory pressure. The learning curve of this new technique by caregivers was studied during training sessions on high fidelity mannequins. <b><i>Results:</i></b> Eight infants born ≥28 weeks of gestation with a birth weight of 1,000 g–2,685 g were included in the study. FAST was successfully performed in each case without anesthesia, second dose of surfactant or mechanical ventilation. One hour after FAST, a decrease of FiO<sub>2</sub> and PCO<sub>2</sub> and an increase of arterial pressure and pH were recorded with medians of individual differences of −0.9, −4 mm Hg, 6.5 mm Hg, and 0.06, respectively. The learning curves of 13 physicians showed a rapid mastery of FAST from the third attempt onwards (mean duration of 113, 66, and 50 s for 1st, 2nd, and 3rd attempts, respectively, 29–37 s for further attempts). <b><i>Conclusion:</i></b> FAST may be considered as a possible new minimally invasive surfactant therapy technique for neonates ≥28 weeks with mild respiratory distress syndrome.
DOI: 10.17632/tjyjn56jbf.1
title: Major tidal constituents for the Indian Ocean and Western Pacific Basin

description: This data is intended to enable comparisons of major tidal constituents measured at tide gauges in the Indian Ocean and Western Pacific Basin with ocean models that aim to be able to replicate the barotropic surface tides in the region. A nice way to view and edit this data is to make a Google "my maps". Simply click "add layer" and drag in the .csv. You are then able to drag the icons to new locations if you are confident of its misplacement. You can create a kml or kmz file of the station locations with this method too. Use for model comparison/validation and related research (do not use for navigational purposes)
DOI: 10.20392/0a7f3ba2-e6f3-40fd-b504-2eb44b76e515
title: Water isotopes at Bruntland Burn catchment

description: Measurements of deuterium and oxygen 18 content in precipitation, stream water, soil moisture, plant xylem, and groundwater.
DOI: 10.5281/zenodo.6426149
title: Metagenome-assembled Genomes of Scandinavium goeteborgense MCPNR19-05 and Erwinia aphidicola MCPNR19-06

description: Here we provide two fasta files (MCPNR19-05.fa and MCPNR19-06.fa) which represent low-quality metagenome assembled genomes (MAGs) obtained from genomic DNA from Massospora cicadina isolate MCPNR19 azygospores collected from multiple seventeen-year cicada (Magicicada septendecim) June 2019 at Powdermill Nature Reserve, Rector, Pennsylvania. MCPNR19-05.fa = Scandinavium goeteborgense MCPNR19-05, a 1.82 Mb 45.61% complete MAG<br> MCPNR19-06.fa = Erwinia aphidicola MCPNR19-06, a 1.79 Mb 29.31% complete MAG<br> <br> <strong>Raw data availability</strong><br> Sequence reads are deposited under SRA project accessions SRR17553520-SRR17553526 and BioProject PRJNA795459. These MAGs are metagenomic assemblies obtained from the host Massospora cicadina (BioSample: SAMN24722893).
DOI: 10.5281/zenodo.6814652
title: Automated systematic evaluation of cryo-EM specimens with SmartScope - Training data for hole detector

description: Training data for hole detector<br> ======================= This dataset includes 36 images.<br> Circles are annotated in COCO format. The following pre-processing was applied to each image:<br> * Auto-orientation of pixel data (with EXIF-orientation stripping) The following augmentation was applied to create 1 versions of each source image:<br> * 50% probability of horizontal flip
DOI: 10.17188/1194051
title: Materials Data on CaMnO3 by Materials Project

description: CaMnO3 is Orthorhombic Perovskite structured and crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. Ca2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Ca–O bond distances ranging from 2.32–2.64 Å. Mn4+ is bonded to six O2- atoms to form corner-sharing MnO6 octahedra. The corner-sharing octahedra tilt angles range from 26–27°. There is two shorter (1.94 Å) and four longer (1.95 Å) Mn–O bond length. There are two inequivalent O2- sites. In the first O2- site, O2- is bonded in a 5-coordinate geometry to three equivalent Ca2+ and two equivalent Mn4+ atoms. In the second O2- site, O2- is bonded in a 4-coordinate geometry to two equivalent Ca2+ and two equivalent Mn4+ atoms.
DOI: 10.5281/zenodo.6884011
title: On the application of an observations-based machine learning parameterization of surface layer fluxes within an atmospheric large-eddy simulation model: Article Data

description: NetCDF datatset of presented results from the publication titled "On the application of an observations-based machine learning parameterization of surface layer fluxes within an atmospheric large-eddy simulation model" in the Journal of Geophysical Research - Atmospheres, Paper #2021JD036214R.
DOI: 10.17608/k6.auckland.17108639.v1
title: Priestley Glacier seismic and ultrasonic constraints on crystallographic orientation

description: Dataset to accompany publication " Ultrasonic and seismic constraints on crystallographic preferred orientations of the Priestley Glacier shear margin, Antarctica ", TC 2022
DOI: 10.5281/zenodo.3566865
title: Database of the ODYM-RECC v2.2 model, used for the UN IRP report on material efficiency and climate change mitigation

description: This dataset contains the 56 model input parameter and the master classification file that were read into the ODYM-RECC model v2.2 to generate the scenarios on material efficiency and climate change mitigation reported in "Resource Efficiency and Climate Change: Material Efficiency Strategies for a Low-Carbon Future. Hertwich, E., Lifset, R., Ali, S., Pauliuk, S., Heeren, Tu, Q. A report of the International Resource Panel. United Nations Environment Programme, Nairobi, Kenya.".
DOI: 10.5281/zenodo.5913171
title: GeNeG: German News Knowledge Graph

description: GeNeG is a knowledge graph constructed from news articles on the topic of refugees and migration, collected from German online media outlets. GeNeG contains rich textual and metadata information, as well as named entities extracted from the articles' content and metadata and linked to Wikidata. The graph is expanded with up to three-hop neighbors from Wikidata of the initial set of linked entities. GeNeG comes in three flavors: Base GeNeG: contains textual information, metadata, and linked entities extracted from the articles. Entities GeNeG: derived from the Base GeNeG by removing all literal nodes, it contains only resources and it is enriched with three-hop Wikidata neighbors of the entities extracted from the articles. Complete GeNeG: the combination of the Base and Entities GeNeG, it contains both literals and resources. Information about uploaded files: all files are b-zipped and in the N-Triples format.
DOI: 10.5287/bodleian:do706mayd
title: Aerosol concentration and meteorological data at Etosha Pan, Namibia (July 2015 - June 2016)
DOI: 10.5441/002/edbt.2016.42
title: Designing Access Methods: The RUM Conjecture
DOI: 10.57865/4w5v-3k95
title: Czech Harmonized Generations and Gender Survey-II Pilot
DOI: 10.11588/data/pjcntn
title: Patients’ willingness to provide their clinical data for research purposes and acceptance of different consent models. Findings from a representative survey of cancer patients in Germany [Research Data]

description: This is the research data of the publication "Patients’ willingness to provide their clinical data for research purposes and acceptance of different consent models. Findings from a representative survey of cancer patients in Germany." The research data includes the questionnaire, the data set used, and a description of the data preparation.
DOI: 10.1285/i20705948v12n4p801
title: The effect of grading policies on Italian Universities' attractiveness: A Conditional Multinomial Logit approach

description: Through the decades, the Higher Education System globally experimented a huge increase in the average marks that each student receives. Among several hypothesis, in this article the idea that grading is one of the tool that every department can use in order to attract a larger amount of students will be stressed. Regarding the Italian case, the speed in obtaining a degree is among the criteria considered by the Ministry of Education in order to evaluate universities, financing them proportionally. As a shortcoming, this can boost an artificial increase in marks. So, the number of students becomes important for those universities with the worst ranking positions, in order to finance themselves through fees. On the other side, it is reasonable to expect that a student emigrates toward places which offer higher chances of receiving a job. In other words, mobility might be driven by the search for better working conditions, and not by the 'ease' of the faculty. Testing this hypothesis, a Multinomial Conditional Logit Model will be implemented in order to measure the probability of choosing a certain destination depending on the harshness and reputation of a University and on the rates of unemployment at a regional level.