cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13141483.v1
title: Additional file 6 of Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

description: Additional file 6 Table S6. Sugar beet genes that show a differential response to BCN infection when comparing the resistant and susceptible cultivar. Statistical significance was evaluated in DESeq2 by evaluating significant interaction between infections status and sugar beet variety.
DOI: 10.6084/m9.figshare.13141489
title: Additional file 8 of Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

description: Additional file 8 Table S8. Primer sequences of sugar beet genes used for qRT-PCR expression analysis.
DOI: 10.6084/m9.figshare.13141474.v1
title: Additional file 3 of Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

description: Additional file 3 Table S3. Significant sugar beet DEGs in the incompatible sugar beet- BCN interaction.
DOI: 10.6084/m9.figshare.13141480
title: Additional file 5 of Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

description: Additional file 5 Table S5. Significant DEGs in comparison of resistant and susceptible sugar beet cultivars in uninfected and BCN-infected conditions.
DOI: 10.6084/m9.figshare.13141486.v1
title: Additional file 7 of Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

description: Additional file 7 Table S7. Transcripts derived from beet cyst nematode (BCN) genes detected during the compatible and incompatible interaction with sugar beet.
DOI: 10.6084/m9.figshare.13141483
title: Additional file 6 of Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

description: Additional file 6 Table S6. Sugar beet genes that show a differential response to BCN infection when comparing the resistant and susceptible cultivar. Statistical significance was evaluated in DESeq2 by evaluating significant interaction between infections status and sugar beet variety.
DOI: 10.5281/zenodo.4131481
title: two-CN-singers-MP3-LRC

description: Two Chinese pop singers, audio with mp3 files and lyrics with each word timestamp.
description: split vocal with spleeter
DOI: 10.5281/zenodo.4105796
title: two-CN-singers-MP3-LRC

description: Two Chinese pop singers, audio with mp3 files and lyrics with each word timestamp.
description: split vocal with spleeter
DOI: 10.6084/m9.figshare.13141595.v1
title: Additional file 2 of Genetic diversity of circumsporozoite protein in Plasmodium knowlesi isolates from Malaysian Borneo and Peninsular Malaysia

description: Additional file 2: Amino acid polymorphisms in the csp N-terminal and C-terminal coding sequences.
DOI: 10.6084/m9.figshare.13141595
title: Additional file 2 of Genetic diversity of circumsporozoite protein in Plasmodium knowlesi isolates from Malaysian Borneo and Peninsular Malaysia

description: Additional file 2: Amino acid polymorphisms in the csp N-terminal and C-terminal coding sequences.
DOI: 10.6084/m9.figshare.13141634
title: Additional file 1 of Studying polymorphic variants of the NAT2 gene (NAT2*5 and NAT2*7) in Nenets populations of Northern Siberia

description: Additional file 1. Results of genotyping of point substitutions in NAT2 gene. File containing the results of genotyping (individuals genotypes) of point substitutions NAT2 * 5 T341C (rs 1801280) and NAT2 * 7 G857A (rs 1799931) by Real-time PCR. The study involved healthy volunteers, representatives of indigenous peoples, Forest Nenets and Tundra Nenets living in Purovsky district of Yamalo-Nenets Autonomous Okrug, Russian Federation, settlement Samburg for the Tundra Nenets and settlements Kharampur, Khalyasavey, Tarko-Sale for the Forest Nenets. All research participants gave a written informed consent to the clinical examination and the publication of their anonymous data.
DOI: 10.6084/m9.figshare.13141634.v1
title: Additional file 1 of Studying polymorphic variants of the NAT2 gene (NAT2*5 and NAT2*7) in Nenets populations of Northern Siberia

description: Additional file 1. Results of genotyping of point substitutions in NAT2 gene. File containing the results of genotyping (individuals genotypes) of point substitutions NAT2 * 5 T341C (rs 1801280) and NAT2 * 7 G857A (rs 1799931) by Real-time PCR. The study involved healthy volunteers, representatives of indigenous peoples, Forest Nenets and Tundra Nenets living in Purovsky district of Yamalo-Nenets Autonomous Okrug, Russian Federation, settlement Samburg for the Tundra Nenets and settlements Kharampur, Khalyasavey, Tarko-Sale for the Forest Nenets. All research participants gave a written informed consent to the clinical examination and the publication of their anonymous data.
DOI: 10.6084/m9.figshare.13141661
title: Additional file 7 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 7: Table S4. 15 Y-STR haplotypes of all C2*-ST samples from previous studies included in the network.
DOI: 10.6084/m9.figshare.13141661.v1
title: Additional file 7 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 7: Table S4. 15 Y-STR haplotypes of all C2*-ST samples from previous studies included in the network.
DOI: 10.6084/m9.figshare.13141646
title: Additional file 2 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 2: Table S1. Y chromosome SNP and STR data of the Uissun tribe.
DOI: 10.6084/m9.figshare.13141646.v1
title: Additional file 2 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 2: Table S1. Y chromosome SNP and STR data of the Uissun tribe.
DOI: 10.6084/m9.figshare.13141649
title: Additional file 3 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 3: Table S2. Y chromosome SNP and STR data of the Uissun tribe from citizen science.
DOI: 10.6084/m9.figshare.13141649.v1
title: Additional file 3 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 3: Table S2. Y chromosome SNP and STR data of the Uissun tribe from citizen science.
DOI: 10.6084/m9.figshare.13141652
title: Additional file 4 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 4: Table S3. Variation in Y-chromosomal haplogroup frequencies between Uissun clans.
DOI: 10.6084/m9.figshare.13141652.v1
title: Additional file 4 of The medieval Mongolian roots of Y-chromosomal lineages from South Kazakhstan

description: Additional file 4: Table S3. Variation in Y-chromosomal haplogroup frequencies between Uissun clans.
DOI: 10.6084/m9.figshare.13141769
title: Additional file 2 of Variation in the expression of a transmembrane protein influences cell growth in Arabidopsis thaliana petals by altering auxin responses

description: Additional file 2. Petal phenotype data.
DOI: 10.6084/m9.figshare.13141769.v1
title: Additional file 2 of Variation in the expression of a transmembrane protein influences cell growth in Arabidopsis thaliana petals by altering auxin responses

description: Additional file 2. Petal phenotype data.
DOI: 10.6084/m9.figshare.13141784
title: Additional file 7 of Variation in the expression of a transmembrane protein influences cell growth in Arabidopsis thaliana petals by altering auxin responses

description: Additional file 7. Primer sequences used in this study.
DOI: 10.6084/m9.figshare.13141784.v1
title: Additional file 7 of Variation in the expression of a transmembrane protein influences cell growth in Arabidopsis thaliana petals by altering auxin responses

description: Additional file 7. Primer sequences used in this study.
DOI: 10.6084/m9.figshare.13141810.v1
title: Additional file 1 of High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus

description: Additional file 1: Table S1. The DDH probabilities to distinguish between R.A73 strain and reference strains that belonged to the similar Enterococcus genus.
DOI: 10.6084/m9.figshare.13141810
title: Additional file 1 of High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus

description: Additional file 1: Table S1. The DDH probabilities to distinguish between R.A73 strain and reference strains that belonged to the similar Enterococcus genus.
DOI: 10.6084/m9.figshare.13141813
title: Additional file 2 of High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus

description: Additional file 2: Table S2. The Blastp output results between R.A73 protein sequences and BACTIBASE (a database dedicated to bacteriocins) protein sequences.
DOI: 10.6084/m9.figshare.13141813.v1
title: Additional file 2 of High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus

description: Additional file 2: Table S2. The Blastp output results between R.A73 protein sequences and BACTIBASE (a database dedicated to bacteriocins) protein sequences.
DOI: 10.6084/m9.figshare.13141814.v1
title: Additional file 2 of Association of ABI3 and PLCG2 missense variants with disease risk and neuropathology in Lewy body disease and progressive supranuclear palsy

description: Additional file 2: Table S1a. Power at 5% significance level by odds ratio for 3351 controls and specified number of cases, for ABI3 with MAF of 0.8 % in controls. Table S1b Power at 5% significance level by odds ratio for 3351 controls and specified number of cases, for PLCG2 with MAF of 1.09 % in controls. Table S2. (A) Braak stage and (B) Thal phase distribution in the PSP and LBD cohorts based on (1) ABI3_rs616338_C_T and (2) PLCG2_rs72824905_C_G genotypes. The total number of subjects and percentage (N (%)) are shown for those subjects with Braak and Thal measures. For each series, the number of carriers with the minor allele, the major allele, and all subjects with a genotype for the given SNP are shown, respectively. The percentage is the N for each neuropathologic category for a given genotype divided by the total N of each series. Braak stage and Thal phase categories are defined as per prior published criteria. Abbreviations: PSP progressive supranuclear palsy, LBD dementia with Lewy bodies. Genotypes for ABI3(rs616338)-(TT/CT/CC) and PLCG2(rs72824905)-(GG/CG/CC). Given their rarity, there were no individuals with ABI3(rs616338)_TT or PLCG2(rs72824905)_GG genotypes.
DOI: 10.6084/m9.figshare.13141826
title: Additional file 2 of Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics

description: Additional file 2: Supplemental Table S1.. Sample metadata for all samples included in this study (i.e. all samples that passed quality control analyses), including sampling location and population, year, and NCBI Genbank Accession number, among other data.
DOI: 10.6084/m9.figshare.13141814
title: Additional file 2 of Association of ABI3 and PLCG2 missense variants with disease risk and neuropathology in Lewy body disease and progressive supranuclear palsy

description: Additional file 2: Table S1a. Power at 5% significance level by odds ratio for 3351 controls and specified number of cases, for ABI3 with MAF of 0.8 % in controls. Table S1b Power at 5% significance level by odds ratio for 3351 controls and specified number of cases, for PLCG2 with MAF of 1.09 % in controls. Table S2. (A) Braak stage and (B) Thal phase distribution in the PSP and LBD cohorts based on (1) ABI3_rs616338_C_T and (2) PLCG2_rs72824905_C_G genotypes. The total number of subjects and percentage (N (%)) are shown for those subjects with Braak and Thal measures. For each series, the number of carriers with the minor allele, the major allele, and all subjects with a genotype for the given SNP are shown, respectively. The percentage is the N for each neuropathologic category for a given genotype divided by the total N of each series. Braak stage and Thal phase categories are defined as per prior published criteria. Abbreviations: PSP progressive supranuclear palsy, LBD dementia with Lewy bodies. Genotypes for ABI3(rs616338)-(TT/CT/CC) and PLCG2(rs72824905)-(GG/CG/CC). Given their rarity, there were no individuals with ABI3(rs616338)_TT or PLCG2(rs72824905)_GG genotypes.
DOI: 10.6084/m9.figshare.13141826.v1
title: Additional file 2 of Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics

description: Additional file 2: Supplemental Table S1.. Sample metadata for all samples included in this study (i.e. all samples that passed quality control analyses), including sampling location and population, year, and NCBI Genbank Accession number, among other data.
DOI: 10.6084/m9.figshare.13141865
title: Additional file 2 of Key facets to build up eHealth and mHealth interventions to enhance physical activity, sedentary behavior and nutrition in healthy subjects – an umbrella review

description: Additional file 2. AMSTAR score of every criterion.
DOI: 10.6084/m9.figshare.13141865.v1
title: Additional file 2 of Key facets to build up eHealth and mHealth interventions to enhance physical activity, sedentary behavior and nutrition in healthy subjects – an umbrella review

description: Additional file 2. AMSTAR score of every criterion.
DOI: 10.6084/m9.figshare.13141885.v1
title: Additional file 10 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 10: Table S9. Gene level screen results of Wnt-regulated lncRNAs and protein-coding gens that have TSS within 1 kb of the TSS of Wnt-regulated lncRNAs from in vivo and in vitro CRISPRi screens.
DOI: 10.6084/m9.figshare.13141894
title: Additional file 3 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 3: Table S2. 78 Wnt-regulated lncRNAs that are significantly up- or down-regulated in pancreatic cancer.
DOI: 10.6084/m9.figshare.13141897.v1
title: Additional file 4 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 4: Table S3. Wnt-regulated lncRNA-PCG pairs linked by eQTL SNPs involving 602 Wnt-regulated lncRNAs.
DOI: 10.6084/m9.figshare.13141885
title: Additional file 10 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 10: Table S9. Gene level screen results of Wnt-regulated lncRNAs and protein-coding gens that have TSS within 1 kb of the TSS of Wnt-regulated lncRNAs from in vivo and in vitro CRISPRi screens.
DOI: 10.6084/m9.figshare.13141891
title: Additional file 2 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 2: Table S1. 1503 Wnt-regulated lncRNAs.
DOI: 10.6084/m9.figshare.13141903
title: Additional file 6 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 6: Table S5. Influence of Wnt inhibition on the co-expression of lncRNA-PCG pairs.
DOI: 10.6084/m9.figshare.13141900
title: Additional file 5 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 5: Table S4. Wnt-regulated lncRNA-PCG pairs linked by eQTL SNPs that colocalize with cancer GWAS loci.
DOI: 10.6084/m9.figshare.13141909
title: Additional file 8 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 8: Table S7. sgRNA libraries used in CRISPRi screens.
DOI: 10.6084/m9.figshare.13141894.v1
title: Additional file 3 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 3: Table S2. 78 Wnt-regulated lncRNAs that are significantly up- or down-regulated in pancreatic cancer.
DOI: 10.6084/m9.figshare.13141903.v1
title: Additional file 6 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 6: Table S5. Influence of Wnt inhibition on the co-expression of lncRNA-PCG pairs.
DOI: 10.6084/m9.figshare.13141909.v1
title: Additional file 8 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 8: Table S7. sgRNA libraries used in CRISPRi screens.
DOI: 10.6084/m9.figshare.13141906.v1
title: Additional file 7 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 7: Table S6. Time-series clustering results and Gene Ontology functional enrichment analysis for significant biological processes of each cluster.
DOI: 10.6084/m9.figshare.13141900.v1
title: Additional file 5 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 5: Table S4. Wnt-regulated lncRNA-PCG pairs linked by eQTL SNPs that colocalize with cancer GWAS loci.
DOI: 10.6084/m9.figshare.13141897
title: Additional file 4 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 4: Table S3. Wnt-regulated lncRNA-PCG pairs linked by eQTL SNPs involving 602 Wnt-regulated lncRNAs.
DOI: 10.6084/m9.figshare.13141891.v1
title: Additional file 2 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 2: Table S1. 1503 Wnt-regulated lncRNAs.
DOI: 10.6084/m9.figshare.13141912
title: Additional file 9 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 9: Table S8. Normalized sgRNA read counts from in vivo and in vitro CRISPRi screens.
DOI: 10.6084/m9.figshare.13141912.v1
title: Additional file 9 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 9: Table S8. Normalized sgRNA read counts from in vivo and in vitro CRISPRi screens.
DOI: 10.6084/m9.figshare.13141906
title: Additional file 7 of Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation

description: Additional file 7: Table S6. Time-series clustering results and Gene Ontology functional enrichment analysis for significant biological processes of each cluster.
DOI: 10.6084/m9.figshare.13141937
title: Additional file 1 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: Summary of BLAST hit analyses of the top 230 most abundant transcripts of Pratylenchus penetrans encoding putative secreted proteins (FPKM &gt; 8) originated from the esophageal gland cells library. BLAST analyses were performed against the non-redundant GenBank database. Transcript abundance was determined as Fragments Per Kilobase of Transcript per Million mapped reads (FPKM) values. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.13141940.v1
title: Additional file 2 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of transcripts encoding putative effector proteins with FPKM values below the established cut-off (FPKM
DOI: 10.6084/m9.figshare.13141958
title: Additional file 7 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of primers used in this study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.13141940
title: Additional file 2 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of transcripts encoding putative effector proteins with FPKM values below the established cut-off (FPKM
DOI: 10.6084/m9.figshare.13141937.v1
title: Additional file 1 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: Summary of BLAST hit analyses of the top 230 most abundant transcripts of Pratylenchus penetrans encoding putative secreted proteins (FPKM &gt; 8) originated from the esophageal gland cells library. BLAST analyses were performed against the non-redundant GenBank database. Transcript abundance was determined as Fragments Per Kilobase of Transcript per Million mapped reads (FPKM) values. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.13141952.v1
title: Additional file 5 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of promoter sequences extracted for 30 genes with gland cell localization in Pratylenchus penetrans. The 600 nt of the upstream region of the start codon was queried for the presence of the CAA[AG|T|C]TG[T|G] C motif previously found associated with gland cell expression of other candidate effectors of P. penetrans. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.13141955.v1
title: Additional file 6 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: BLAST hit analyses of transcripts with gland cell localization against the draft genome of Pratylenchus penetrans. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.13141961
title: Additional file 8 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of CEGMA genes used in this study. (XLSX 693 kb)
DOI: 10.6084/m9.figshare.13141952
title: Additional file 5 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of promoter sequences extracted for 30 genes with gland cell localization in Pratylenchus penetrans. The 600 nt of the upstream region of the start codon was queried for the presence of the CAA[AG|T|C]TG[T|G] C motif previously found associated with gland cell expression of other candidate effectors of P. penetrans. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.13141961.v1
title: Additional file 8 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of CEGMA genes used in this study. (XLSX 693 kb)
DOI: 10.6084/m9.figshare.13141958.v1
title: Additional file 7 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: List of primers used in this study. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.13141955
title: Additional file 6 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

description: BLAST hit analyses of transcripts with gland cell localization against the draft genome of Pratylenchus penetrans. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.13142012.v1
title: Additional file 9 of PHOSPHO1 is a skeletal regulator of insulin resistance and obesity

description: Additional file 9: Table S9. In Silico analysis top diseases associated with unique WT HFD and Phospho1−/− HFD proteins. (CSV 3 kb)
DOI: 10.6084/m9.figshare.13142012
title: Additional file 9 of PHOSPHO1 is a skeletal regulator of insulin resistance and obesity

description: Additional file 9: Table S9. In Silico analysis top diseases associated with unique WT HFD and Phospho1−/− HFD proteins. (CSV 3 kb)