cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.65s4jh
title: Occurrence Download

description: A dataset listing the 37 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ictaluridae",
 "Country is United States of America",
 "StateProvince is Ohio",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 37 records were derived from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294708-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvzbxg
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.87646 7.24271,-77.65957 6.87794,-77.53856 6.68568,-77.4599 6.6977,-77.34494 6.54143,-77.35099 6.28288,-77.472 6.30092,-77.47947 6.20111,-77.42502 6.11689,-77.31611 5.92434,-77.23745 5.70764,-77.42502 5.62937,-77.55208 5.52097,-77.40499 5.46335,-77.33238 5.2284,-77.16296 5.19225,-76.94514 5.19827,-76.70916 5.22237,-76.5579 5.28865,-76.51803 5.52464,-76.46358 5.69325,-76.48778 5.92801,-76.49988 6.13861,-76.54224 6.30102,-76.6381 6.66276,-76.6744 6.86105,-76.75911 7.01721,-76.86802 7.1373,-77.01727 7.20578,-77.09593 7.36183,-77.09593 7.54781,-77.12013 7.72863,-77.04752 7.83654,-76.99912 7.98637,-76.90836 8.11817,-77.02937 8.2619,-77.16249 8.41755,-77.2593 8.50134,-77.36821 8.6569,-77.44081 8.56716,-77.41661 8.49536,-77.36216 8.41755,-77.3077 8.28585,-77.25324 8.1601,-77.22904 8.04628,-77.14433 7.96839,-77.32585 7.92045,-77.36821 7.7706,-77.56788 7.50673,-77.7373 7.69266,-77.68284 7.53073,-77.73125 7.45274,-77.8099 7.47674,-77.87646 7.24271))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Luehea seemannii Planch. & Triana"
 ]
}

 The dataset includes 52 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135815-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2b8dx
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Rhipidomys leucodactylus (Tschudi, 1845)"
 ]
}

 The dataset includes 94 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047614-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4v9uma
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptoseris foliosa Dinesen, 1980"
 ]
}

 The dataset includes 129 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135825-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zf2fbw
title: Occurrence Download

description: A dataset containing 207052 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euglenozoa"
 ]
}

 The dataset includes 207052 records from 837 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011315-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eusqtn
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calumma cucullatum (Gray, 1831)"
 ]
}

 The dataset includes 31 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281250-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdnt4z
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trixis nelsonii Greenm."
 ]
}

 The dataset includes 74 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023681-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvaawv
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Troglophyton elsiae Hilliard"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023735-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6wzwm
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachydactylus wahlbergii (Peters, 1869)"
 ]
}

 The dataset includes 296 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281238-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2n2ec
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllocomus hiltoni (Chamberlin, 1919)"
 ]
}

 The dataset includes 42 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000214-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvgctu
title: Occurrence Download

description: A dataset containing 18220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "GadmGid is FRA",
 "OccurrenceStatus is Present",
 "TaxonKey is Carnivora",
 "Year 2000-2022"
 ]
}

 The dataset includes 18220 records from 371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0427409-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.939h9d
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anomochilus weberi (Lidth De Jeude, 1890)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281245-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnt667
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ahaetulla pulverulenta (Duméril, Bibron & Duméril, 1854)"
 ]
}

 The dataset includes 59 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281248-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yehvmc
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichocereus (A.Berger) Riccob."
 ]
}

 The dataset includes 278 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214112-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rn5due
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neotatea Maguire"
 ]
}

 The dataset includes 105 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214127-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2q87c
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Weberocereus Britton & Rose"
 ]
}

 The dataset includes 645 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214117-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9vb7za
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Yavia R.Kiesling & Piltz"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214120-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h72gwr
title: Occurrence Download

description: A dataset containing 2091515446 species occurrences available in GBIF matching the query:
{
 "Year" : [
 "2000-2023"
 ]
}

 The dataset includes 2091515446 records from 46925 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022623-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/b99r3tdcn3.2
title: Data for "The characterization of ancient Methanococcales malate dehydrogenases reveals that strong thermal stability prevents unfolding under intense g- irradiation"

description: The dataset contains: (1) The 18 Malate dehydrogenase sequences of Methanococcales, (2) The maximum-likelihood tree inferred with the 18 Malate dehydrogenase sequences of Methanococcales, and (3) the inferred ancestral sequences.
DOI: 10.17632/tmp5ry5sz8.2
title: Intrinsic Adaptive Plasticity in Mouse and Human Sensory Neurons

description: Here, we show that sustained depolarization (induced by 24h incubation in 30mM KCl) induces compensatory changes that decrease excitability of mouse and human sensory neurons without directly opposing membrane depolarization. Voltage clamp recordings show that sustained depolarization produces no significant alteration in voltage-gated potassium currents, but a robust reduction in voltage-gated sodium currents, likely contributing to the overall decrease in neuronal excitability. The compensatory decrease in neuronal excitability and reduction in voltage-gated sodium currents reversed completely following a 24h recovery period in normal medium. Similar adaptive changes were not observed in response to 24h of sustained action potential firing induced by optogenetic stimulation at 1Hz, indicating the need for prolonged depolarization to drive engagement of this adaptive mechanism in sensory neurons. Our findings show that mouse and human sensory neurons are capable of engaging adaptive mechanisms to regulate intrinsic excitability in response to sustained depolarization in a manner similar to that described in neurons in the central nervous system. 

The data listed here show a description of the electrophysiological analysis of mouse and human sensory neurons subjected to sustained depolarization. In addition, you will find results from immunocytochemistry and cell viability assays. The data listed here also includes statistical analysis generated by Graphpad. Please refer to our manuscript for further description. 

The link to the RNAseq dataset is listed below
DOI: 10.17632/6z4tzzpsjs.1
title: Experiment on the Water-Rock Interactions between Granite Cuttings and Alkaline NaCl Solution and Their Mechanisms

description: A series of water-rock interaction experiments were carried out between granite cuttings and alkaline 6 wt% NaCl solution, and further tests on the mineral, micro-morphological and chemical changes of cuttings, as well as chemical changes of solutions were performed.

The database contains the orignal data obtained from the tests of granite cuttings and reactive solutions. For granite cuttings, there are XRD test results and SEM-EDS test results before and after water-rock interactions. For reactive solutions, there are solution chemical analysis results of solutions obtained during water-rock interactions.

Additionally, discussion resluts of the test results are also presented along with the test results.
DOI: 10.17632/8phtpvbvgs.1
title: Spatial proteomics identifies a novel CRTC-dependent viral sensing pathway that stimulates production of Interleukin-11

description: Appropriate cellular recognition of viruses is essential for the generation of effective innate and adaptive antiviral immunity. Viral sensors and their signalling components thus provide a crucial first line of host defence. Many exhibit subcellular relocalisation upon activation, triggering expression of interferon and antiviral genes. To identify novel signalling factors we analysed protein relocalisation on a global scale during viral infection. CREB Regulated Transcription Coactivators-2 and 3 (CRTC2/3) exhibited early cytoplasmic-to-nuclear translocation upon a diversity of viral stimuli, in diverse cell types. This movement was depended on Mitochondrial Antiviral Signalling Protein (MAVS), cyclo-oxygenase proteins and protein kinase A. We identify a key effect of transcription stimulated by CRTC2/3 translocation as production of the pro-fibrogenic cytokine interleukin-11. This may be important clinically in viral infections associated with fibrosis, including SARS-CoV-2.
DOI: 10.17632/vh4g4g2322.1
title: Enriched Tourism Dataset Paris (POIs)

description: This dataset contains the Paris subset of the Tourpedia dataset, specifically focusing on points of interest (POIs) categorized as attractions (dataset available at http://tour-pedia.org/download/paris-attraction.csv). The original dataset comprises 4,351 entries that encompass a variety of attractions across Paris, providing details on several attributes for each POI. These attributes include a unique identifier, POI name, category, location information (address), latitude, longitude, specific details, and user-generated reviews. The review fields contain textual feedback from users, aggregated from platforms such as Google Places, Foursquare, and Facebook, offering a qualitative insight into each location.

However, due to the initial dataset's high proportion of incomplete or inconsistently structured entries, a rigorous cleaning process was implemented. This process entailed the removal of erroneous and incomplete data points, ultimately refining the dataset to 477 entries that meet criteria for quality and structural coherence. These selected entries were subjected to further validation to ensure data integrity, enabling a more accurate representation of Paris' attractions.

- Paris.csv
It contains columns including a unique identifier, POI name, category, location information (address), latitude, longitude, specific details, and user-generated reviews. Those reviews have been previously retrieved and pre-processed from Google Places, Foursquare, and Facebook, and have different formats: all words, only nouns, nouns + verbs, noun + adjectives and nouns + verbs + adjectives.

- Paris_annotated.csv
It contains the ground truth relating to the previous dataset, with manual annotations made by humans on the categorisation of each of the POIs into 12 different pre-defined categories.
It has the following columns:
 * POI name
 * POI's address
 * One column for each of the above categories. 1 means that the POI belongs to the category while blank indicates that it does not.
DOI: 10.17632/gw9hjn4v65.1
title: Enriched Tourism Dataset London (POIs)

description: This dataset contains the London subset of the Tourpedia dataset, specifically focusing on points of interest (POIs) categorized as attractions (dataset available at \url{http://tour-pedia.org/download/london-attraction.csv}). The original dataset comprises 20,727 entries that encompass a variety of attractions across London, providing details on several attributes for each POI. These attributes include a unique identifier, POI name, category, location information (address), latitude, longitude, specific details, and user-generated reviews. The review fields contain textual feedback from users, aggregated from platforms such as Google Places, Foursquare, and Facebook, offering a qualitative insight into each location.

However, due to the initial dataset's high proportion of incomplete or inconsistently structured entries, a rigorous cleaning process was implemented. This process entailed the removal of erroneous and incomplete data points, ultimately refining the dataset to 2,341 entries that meet criteria for quality and structural coherence. These selected entries were subjected to further validation to ensure data integrity, enabling a more accurate representation of London's attractions.

- London.csv
It contains columns including a unique identifier, POI name, category, location information (address), latitude, longitude, specific details, and user-generated reviews. Those reviews have been previously retrieved and pre-processed from Google Places, Foursquare, and Facebook, and have different formats: all words, only nouns, nouns + verbs, noun + adjectives and nouns + verbs + adjectives.

- London_annotated.csv
It contains the ground truth relating to the previous dataset, with manual annotations made by humans on the categorisation of each of the POIs into 12 different pre-defined categories.
It has the following columns:
 * POI name
 * POI's address
 * One column for each of the above categories. 1 means that the POI belongs to the category while blank indicates that it does not.
DOI: 10.17632/h3bzjxrfy8.1
title: LINF_350036400

description: hypothetical protein - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/bxykxdxxzh.1
title: LINF_350036300

description: ATP-dependent RNA helicase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/c883v7mc4n.1
title: Recent sSubmarine mass transport along the continental slope of the SE Mediterranean

description: Supplementary Material to Katz, O., Almogi-Labin, A., Hyams-Kaphzan, O., 2025 (Marine Geology):
Stratigraphy and chronology of recent submarine mass transport along the continental slope of the southeastern Mediterranean Sea with applications to marine geohazard.

Table T1. Down-core laboratory analysis of the studied cores, including planktic foraminiferal abundance, radiocarbon ages, oxygen isotopes, total organic carbon, and particle size distribution mode for (a) Core AM113; (b) Core AM149; (c) Core AM015; and (d) Core AM137.
 
Figure S1. Density calibration for the studied cores; CT units (HU) to MKS bulk sediment-density (kg/m3). Twenty measurements of averaged HU values were performed in 1 cm by 6 cm vertical rectangles on a longitudinal CT slice in the middle of core AM113 (average HU of an individual rectangular ranged ~600 - ~1500). They were then plotted against the gamma density values obtained for the same core depths using a Multi Scan Core Logger (Haifa University, Israel). 

Figure S2. Photographs of the studied cores. (a) AM113; (b) AM149; (c) AM015; (d) AM137. Depth scale is in centimeters. The major stratigraphic units and the transition from the Last Glacial Period to the Holocene are marked along each core. Also presented are the Munsell colors of the sediment at selected core depths.

Figure S3. The mode of the particle size distribution along the studied cores. The S1 sequence along each core, based on the TOC values (Figs. 4, 6, 8, 10), and the debrite sections along the cores (Figs. 2, 5, 7, 9) are marked by gray and reddish hatching, respectively. Selected Isochrones, based on radiocarbon dating and stratigraphy, are marked. (a) Core AM113; (b) Core AM149; (c) Core AM015; (d) Core AM137.
DOI: 10.17632/sgkp4j85n9.1
title: LINF_350037000

description: Riboflavin kinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/r2k5yrgwhb.1
title: Habitat complexity affects microbial growth in fractal maze - Data sets

description: The great variety of Earth’s microorganisms and their functions is attributed to the heterogeneity of their habitats, but our understanding of the impact of this heterogeneity on microbes is limited at the microscale. In the present study we tested how a gradient of spatial habitat complexity in the form of fractal mazes influenced the growth, substrate degradation, and interactions of the bacterial strain Pseudomonas putida and the fungal strain Coprinopsis cinerea. These strains responded in opposite ways: complex habitats strongly reduced fungal growth but, in contrast, increased the abundance of bacteria. Fungal hyphae did not reach far into the mazes and forced bacteria to grow in deeper regions. Bacterial substrate degradation strongly increased with habitat complexity, even more than bacterial biomass, until an optimal depth, while the most remote parts of the mazes showed both decreased biomass and substrate degradation. These results suggest an increase in enzymatic activity in confined spaces, where areas may experience enhanced microbial activity and resource use efficiency. Very remote spaces showing a slower turnover of substrates illustrate a mechanism which may contribute to the long-term storage of organic matter in soils. We here demonstrate that the sole effect of spatial microstructures affects microbial growth and substrate degradation that led to differences in local microscale spatial availability. These differences might add up to considerable changes in nutrient cycling at the macroscale, such as contributing to soil organic carbon storage. 

This set of data correspond to two types of measurements. The file "Fractal chip results" correspond to the fluorescence measurements of each fractal maze, in the different time points, replicates, and treatments. The file "Spatial analysis" correspond to the fluorescence measurements within the fractal mazes related to the different levels of accessibility within the mazes.
DOI: 10.17632/pk8t5ghxht.1
title: Sleep quality, stress, and discounting

description: These are data from the study: 4. Law, O. 1, & Rasmussen, E.B. (2023). Poor sleep quality and stress differentially predict delay discounting for food, but not money. Journal of Behavioral Decision Making.
DOI: 10.17632/nghf59hf4s.2
title: Subbanna_et_al_2024_source_data_v2

description: Source data for Subbanna et al (2024), "A quantitative intracellular peptide binding assay reveals recognition determinants and context dependence of short linear motifs".
Contents (folder): Source data and processed data from competitive growth assays and next generation sequencing.
Folder 1: 1_competitive_growth_assay_source_data
Subfolders:
&gt; Figure_3_4_S2_TNKS2ARC4-motifs_full-DMS
&gt; Figure_5_MDM2-motifs_full-DMS
&gt; Figure_6_S3_WW-motifs_full-DMS
&gt; Figure_7_WW-motif_single-position-DMS
&gt; Figure_8_PSSM-sums_WW-motifs
Folder 2: 2_uncropped_blot_images
Subfolders:
&gt; Fig_2B_uncropped_blots
&gt; Fig_S1G_uncropped_blots
DOI: 10.17632/6wzfkwxhnf.1
title: Phosphatidylserine Synthase in the Endoplasmic Reticulum of Toxoplasma gondii is Essential for its Lytic Cycle in Human Host Cells

description: Data belonging to the manuscript "Phosphatidylserine Synthase in the Endoplasmic Reticulum of Toxoplasma gondii is Essential for its Lytic Cycle in Human Host Cells" by Dimitrios Alexandros Katelas, Rosalba Cruz Miron, Ruben D. Arroyo-Olarte, Jos F. Brouwers, Ratnesh Kumar Srivastav, Nishith Gupta. Data consist of UPLC-HRAMS data of lipids and the resulting MSDial result file.