cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4041899
title: An Empirical Characterization of Event Sourced Systems and Their Schema Evolution - Lessons from Industry - Accompanying Anonymized Transcripts

description: Anonymized interviews with 25 engineers on their experience applying Event Sourcing. These transcripts are used in our publication "An Empirical Characterization of Event Sourced Systems and Their Schema Evolution - Lessons from Industry".
DOI: 10.25919/5f68f2b758b5d
title: Parkes observations for project P1069 semester 2020APRS_05

description: We propose to carry out Parkes follow-up observations of pulsar candidates identified in the Rapid ASKAP Continuum Survey (RACS). This is the first all-sky pulsar survey in the imaging domain in the southern hemisphere thanks to ASKAP. Eight sources have been selected because of (1) their very high fraction of circular polarisation; (2) their lack of optical counterparts; (3) strong variability, which might indicate either strong interstellar scintillation or eclipsing by companion stars if in binaries; (4) the non-detection of these relatively bright sources in previous pulsar surveys, which might indicate extreme nature of these candidates. High time and frequency resolution targeted search with UWL are proposed. Such observations will enable us to carry out deep searches of pulsars with very short spin periods or in compact binaries.
DOI: 10.5281/zenodo.4041901
title: Whole genome sequence analysis of porcine astroviruses reveals novel genetically diverse genotypes circulating in East African smallholder pig farms

description: Supplementary materials for the porcine astrovirus study in East Africa. <strong>Table S1</strong>: Pairwise comparison of nucleotide sequence identities of the complete (near complete, U460) genomes of the seven (7) astrovirus field strains (bold) and with sequences of other astroviruses available in GenBank <strong>Table S2</strong>. Summary of nucleotide sequence identity matrix of the capsid protein (ORF2) among the seven (7) astroviruses field strains (bold) and the known reference strains in the GenBank using Clustal Omega <strong>Table S3</strong>. Summary of amino acid sequence identity matrix of the capsid protein (ORF2) among the 7 astroviruses field strains (bold) and the known reference strains in the GenBank using Clustal Omega <strong>Table S4</strong>: Estimates of evolutionary divergence between the East African PoAstVs and selected known AstV in the GenBank based on the amino acid sequences of complete ORF2 protein. The number of amino acid differences per site from between sequences is shown. Standard error estimate(s) are shown above the diagonal for our strains. <strong>Table S5</strong>. Recommended potential linear antigenic epitopes predicted inside capsid protein (ORF2) of our field strains by SVMTriP web-based tool and corresponding antigenicity predicted by VaxiJen software
DOI: 10.5281/zenodo.4041900
title: Whole genome sequence analysis of porcine astroviruses reveals novel genetically diverse genotypes circulating in East African smallholder pig farms

description: Supplementary materials for the porcine astrovirus study in East Africa. <strong>Table S1</strong>: Pairwise comparison of nucleotide sequence identities of the complete (near complete, U460) genomes of the seven (7) astrovirus field strains (bold) and with sequences of other astroviruses available in GenBank <strong>Table S2</strong>. Summary of nucleotide sequence identity matrix of the capsid protein (ORF2) among the seven (7) astroviruses field strains (bold) and the known reference strains in the GenBank using Clustal Omega <strong>Table S3</strong>. Summary of amino acid sequence identity matrix of the capsid protein (ORF2) among the 7 astroviruses field strains (bold) and the known reference strains in the GenBank using Clustal Omega <strong>Table S4</strong>: Estimates of evolutionary divergence between the East African PoAstVs and selected known AstV in the GenBank based on the amino acid sequences of complete ORF2 protein. The number of amino acid differences per site from between sequences is shown. Standard error estimate(s) are shown above the diagonal for our strains. <strong>Table S5</strong>. Recommended potential linear antigenic epitopes predicted inside capsid protein (ORF2) of our field strains by SVMTriP web-based tool and corresponding antigenicity predicted by VaxiJen software
DOI: 10.26208/ce9f-sm73
title: Bedforms of Thwaites Glacier, West Antarctica: Character and Origin

description: Bedforms of Thwaites Glacier, West Antarctica both record and affect ice flow. Thwaites Glacier flows across the tectonic fabric of the West Antarctic rift system with its bedrock highs and sedimentary basins. Swath radar and seismic surveys of the glacier bed have revealed soft-sediment flutes 100 m or more high extending 15 km or more across basins downglacier from bedrock highs, and ending at prominent hard-bedded moats on stoss sides of the next topographic highs. We use simple models to show that ice flow against topography generates high pressure between ice and till upglacier along the bed over a distance that scales with the topography. This high pressure would exclude ice-contact water there and thus increase ice-till coupling and till flux there, removing till to allow bedrock erosion and create moats. Till carried across highlands would then be deposited in lee-side positions, remaining soft on top to approach steady-state by matching till-deformational fluxes from upglacier of the topography, and prograding downglacier over time. The bedforms of the part of Thwaites surveyed here are prominent because ice flow has persisted over a long time on this geological setting, not because ice flow is anomalous. Bedform development likely has caused evolution of ice flow over time.
DOI: 10.6084/m9.figshare.12980765
title: RAW DATA "Systemic psychophysiological response to auditory stimuli"

description: Raw data from fNIRS, BIOPAC and EEG recordings of the study "Systemic psychophysiological response to auditory stimuli" are added for further or additional analysis.
DOI: 10.6084/m9.figshare.12980765.v2
title: RAW DATA "Systemic psychophysiological response to auditory stimuli"

description: Raw data from fNIRS, BIOPAC and EEG recordings of the study "Systemic psychophysiological response to auditory stimuli" are added for further or additional analysis.
DOI: 10.7284/138092
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KM2003 using a Hawaii UHDAS instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138099
title: Anemometer data collected during research cruise KM2003 using a RM Young 85106 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138100
title: Anemometer data collected during research cruise KM2003 using a RM Young 85106 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138095
title: Barometer data collected during research cruise KM2003 using a Vaisala PTB220 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138096
title: Fluorometer data collected during research cruise KM2003 using a WET Labs WETStar instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138093
title: Gravimeter data collected during research cruise KM2003 using a Bell BGM-3 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138094
title: Gyrocompass data collected during research cruise KM2003 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138090
title: INS (Inertial Navigation System) data collected during research cruise KM2003 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138091
title: Meteorological Station data collected during research cruise KM2003 using a Hawaii MET-System instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138097
title: Meteorological Station data collected during research cruise KM2003 using a Hawaii MET-System instrument system onboard the platform RV Kilo Moana

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/138098
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise KM2003 using a General Oceanics 8050 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138087
title: Speedlog data collected during research cruise KM2003 using a Yokogawa EML500FA2 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138088
title: SSV (Sound Speed Velocimeter) data collected during research cruise KM2003 using a AML SV&P instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/138089
title: TSG (Thermosalinograph) data collected during research cruise KM2003 using a Sea-Bird SBE-45 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.12981812
title: R0192_20171024a_videos

description: Rat 0192, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12925724
title: SD3. IPA Pathway comparisons across multiple samples

description: IPA canonical pathway comparison across multiple samples of virus-infected vs. mock control from GSE147507. A spreadsheet showing canonical pathway names along with activity z-scores for each sample is presented here.<b></b>
DOI: 10.6084/m9.figshare.12925724.v1
title: SD3. IPA Pathway comparisons across multiple samples

description: IPA canonical pathway comparison across multiple samples of virus-infected vs. mock control from GSE147507. A spreadsheet showing canonical pathway names along with activity z-scores for each sample is presented here.<b></b>
DOI: 10.5519/qd.rrp5fr23
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4661333 records)
DOI: 10.5519/qd.iw5pcomz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4661333 records)
DOI: 10.6084/m9.figshare.12899387
title: SD1. IPA Pathway Analysis results for series16 (GSE147507)

description: A spreadsheet containing pathway names, p-values, activity z-scores, and overlapping genes. <br>IPA pathway enrichment analysis result for differentially expressed genes from A549 cells transfected with exogenous ACE2, infected with SARS-CoV-2 (USA-WA1/2020) vs. Mock control (series16_GSE147507). <br><br><br><br><br><br><br> <br>
DOI: 10.6084/m9.figshare.12899387.v1
title: SD1. IPA Pathway Analysis results for series16 (GSE147507)

description: A spreadsheet containing pathway names, p-values, activity z-scores, and overlapping genes. <br>IPA pathway enrichment analysis result for differentially expressed genes from A549 cells transfected with exogenous ACE2, infected with SARS-CoV-2 (USA-WA1/2020) vs. Mock control (series16_GSE147507). <br><br><br><br><br><br><br> <br>
DOI: 10.6084/m9.figshare.12899399
title: SD2 : BaseSpace Correlation Engine (BSCE) pathway enrichment analysis

description: A spreadsheet containing pathway names, pathway direction and p-values were shown.<br>The pathway enrichment analysis was done by Base Space Correlation Engine Software (BSCE) for diferentially expressed genes from SARS-CoV-2-infected vs. Mock control from series 16 (GSE147507). <br>
DOI: 10.6084/m9.figshare.12899399.v1
title: SD2 : BaseSpace Correlation Engine (BSCE) pathway enrichment analysis

description: A spreadsheet containing pathway names, pathway direction and p-values were shown.<br>The pathway enrichment analysis was done by Base Space Correlation Engine Software (BSCE) for diferentially expressed genes from SARS-CoV-2-infected vs. Mock control from series 16 (GSE147507). <br>
DOI: 10.6084/m9.figshare.12899408
title: SD4. Potentially repurposable COVID-19 Drugs or compounds

description: A spreadsheet with the drug or compound names and correlation scores<br> A complete list of the BaseSpace Correlation Engine computed drugs or compound revealing a negative correlation with the gene expression profile of series16_GSE147507 (differentially expressed genes from A549 cells transfected with exogenous ACE2, infected with SARS-CoV-2 (USA-WA1/2020) vs. Mock control). <br>
DOI: 10.6084/m9.figshare.12907433
title: series1_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) NHBE Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from NHBE cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series1_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).<br>
DOI: 10.6084/m9.figshare.12907436.v1
title: series2_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 0.2) A549 Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from A549 cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 0.2) (series2_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).<br>
DOI: 10.6084/m9.figshare.12907436
title: series2_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 0.2) A549 Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from A549 cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 0.2) (series2_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).<br>
DOI: 10.6084/m9.figshare.12907445
title: series5_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) A549 Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from A549 cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series5_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).
DOI: 10.6084/m9.figshare.12907463
title: series7_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) Calu3 Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from Calu3 cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series7_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).
DOI: 10.6084/m9.figshare.12907463.v1
title: series7_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) Calu3 Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from Calu3 cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series7_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).
DOI: 10.6084/m9.figshare.12907469.v1
title: series16_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) A549 Cells+ACE2

description: RNA-Seq reads (FASTQ) of biological triplicates from A549 cells transfected with exogenous ACE2 and then infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series16_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).
DOI: 10.6084/m9.figshare.12907469
title: series16_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) A549 Cells+ACE2

description: RNA-Seq reads (FASTQ) of biological triplicates from A549 cells transfected with exogenous ACE2 and then infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series16_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).
DOI: 10.5281/zenodo.3978621
title: Data for B-vitamin content in maternal diet and infant morbidity among breastfeeding mother-infant dyads from northern Kenya

description: Expanded data for a manuscript entitled, "B-vitamin content in maternal diet and infant morbidity among breastfeeding mother-infant dyads from northern Kenya" by Amelia N. Odo et al. The original version was published in April 13, 2020. Version 2 includes data from more participants and additional variables relevant for characterizing maternal and infant dietary characteristics. Notes on coding for the variable "inflam" - value 1 indicates the presence of maternal subclinical (low grade) inflammation <strong>defined as serum CRP&gt;3mg/l</strong> (not 10 mg/l stated in Codebook of Version 1). Version 2 includes the variable "other" for other foods as part of the dietary diversity data.
description: Data collection supported by National Science Foundation of the United States (grant number BCS 0622358) and the Wenner-Gren Foundation for Anthropological Research (grant number 7460). Data coding supported by Michigan State University PURI and SROP awards.
DOI: 10.5281/zenodo.4041938
title: Data for GRL manuscript "Vertical Coordinate and Resolution Dependence of the Second Moment Turbulent Closure Models"

description: The zipped directory contains data used for analysis and figures in the GRL manuscript "Vertical Coordinate and Resolution Dependence of the Second Moment Turbulent Closure Models" ### OSP observations: Air Temperature: airt50n145w_hr.ascii Ocean Temperature: t50n145w_hr.ascii Ocean Salinity: s50n145w_hr.ascii Total Heat Flux: heatflux_papa.dat 10m Wind Speed: wspd_papa.dat u and v components of Stokes drift velocity hourly time series given on vertical grid vertical_grid_128: uvstk_papa.dat ### NCOM simulation results out_Model_LayerGrid.dat Model: h15 - use harcourt (2015) kc04 - use Kantha & Clayson (2004) myl2p5 - use Mellor & Yamda (1982) level 2.5 Layer: 030, 040, 050, 080, 100 Grid: s - uniform stretched grid u - uniform grid y - mixed layer enhanced grid The following variables are provied in all out_*.dat files as given in their headers depth (m) tke (cm2/s2) dis (cm2/s3) tl (cm) zkm (cm2/s) zkh (cm2/s) T (C) S (psu) pd (kg/m3) z-mid (m) ### LES output Eddy viscosity computed using LES model LES simulation with all foring - Km_les_AllForcing.dat LES simulation without Stokes drift - Km_les_NoStk.dat LES simulation without Heat Flux - Km_les_NoHF.dat
DOI: 10.5281/zenodo.4041937
title: Data for GRL manuscript "Vertical Coordinate and Resolution Dependence of the Second Moment Turbulent Closure Models"

description: The zipped directory contains data used for analysis and figures in the GRL manuscript "Vertical Coordinate and Resolution Dependence of the Second Moment Turbulent Closure Models" ### OSP observations: Air Temperature: airt50n145w_hr.ascii Ocean Temperature: t50n145w_hr.ascii Ocean Salinity: s50n145w_hr.ascii Total Heat Flux: heatflux_papa.dat 10m Wind Speed: wspd_papa.dat u and v components of Stokes drift velocity hourly time series given on vertical grid vertical_grid_128: uvstk_papa.dat ### NCOM simulation results out_Model_LayerGrid.dat Model: h15 - use harcourt (2015) kc04 - use Kantha & Clayson (2004) myl2p5 - use Mellor & Yamda (1982) level 2.5 Layer: 030, 040, 050, 080, 100 Grid: s - uniform stretched grid u - uniform grid y - mixed layer enhanced grid The following variables are provied in all out_*.dat files as given in their headers depth (m) tke (cm2/s2) dis (cm2/s3) tl (cm) zkm (cm2/s) zkh (cm2/s) T (C) S (psu) pd (kg/m3) z-mid (m) ### LES output Eddy viscosity computed using LES model LES simulation with all foring - Km_les_AllForcing.dat LES simulation without Stokes drift - Km_les_NoStk.dat LES simulation without Heat Flux - Km_les_NoHF.dat
DOI: 10.7284/127517
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1703 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127516
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1703 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127518
title: Fluorometer data collected during research cruise AE1703 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127515
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1703 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127514
title: Singlebeam Echosounder data collected during research cruise AE1703 using a Knudsen 3260 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/cc11fdnj
title: CCDC 966197: Experimental Crystal Structure Determination

description: Related Article: Wojciech Przybylski, Wojciech Nitek, Janusz T. Szklarzewicz|2013|CSD Communication|||
description: Related Article: Janusz Szklarzewicz, Anna Jurowska, Maciej Hodorowicz, Grzegorz Kazek, Monika Głuch-Lutwin, Jacek Sapa, Monika Papież|2021|J.Mol.Struct.|1224|129205|doi:10.1016/j.molstruc.2020.129205