cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11573397.v3
title: CEAP-Summary descriptions, 2014–2017

description: This dataset provides plant-level information on absolute emissions, fuel uses, generating capacities, geographic locations, etc.
DOI: 10.6084/m9.figshare.12860921.v1
title: scintillation data

description: Scintillation data from 14 September 2013 to 2 October 2013
DOI: 10.6084/m9.figshare.5746227.v2
title: Fasting northern elephant seal pup blubber transcriptome

description: De novo Trinity transcriptome assembly from blubber (adipose tissue) collected from weaned northern elephant seal (Mirounga angustirostris, NES) pups during their post-weaning fast. Samples were collected from independent cohorts of 6 pups each, "early fasting" (1-2 weeks post weaning) and "late fasting" (6-8 weeks post weaning) and total RNA was isolated (RIN: 7.6-9.0). Twelve strand-specific libraries were prepared according to Illumina protocol with Ribo-zero depletion (human/rat/mouse), and sequenced (125 bp paired-end reads) on one lane of Illumina HiSeq 2000, producing an average of 41.5 million reads per sample. De novo assembly was conducted using all 12 samples and Trinity v2.1.1 with default settings, including adapter trimming ,but without abundance normalization. The assembly contains 1,830,330 transcripts (contigs) in 1,635,200 gene clusters with mean and median contig length of 835 bp and 425 bp, respectively. Mapping rate of reads to assembly was 87% and the assembly contains 81.2% complete, 36.3% duplicated, and 15.5% fragmented vertebrate BUSCOs, with only 3.2% missing from this dataset. The assembly was annotated by BLASTx using DIAMOND v0.8.31 with "very sensitive" option against the UniProt/SwissProt database (downloaded 8/20/17), with e-value threshold of 0.001. We identified 389,363 homologs in the transcriptome. The raw assembly file is called FastingNESPupTrinityAssembly.gz and the annotation file is called FastingNESPupAssemblyAnnotation.xlsx (also available as a tab delimited text file).
DOI: 10.4121/uuid:a013b37f-b1cc-4903-9b2f-255bb709887b
title: Data underlying the research on daily currency exchange rate using event study methodology

description: Dataset contains daily exchange rates covering RM/USD, RM/EUR, RM/GBP, RM/Yen, RM/HKD and RM/SGD and also daily domestic and foreign interest rates. Data runs from 1 August 2005 to 30 August 2018, with some missing values. The exchange rates are transformed into logarithms and the first difference is then taken
DOI: 10.5281/zenodo.15283330
title: Analyzing the Effectiveness of Generative AI in Providing Learning Support

description: This archive contains the full dataset used in the evaluation of generative AI tools across text, image, and video modalities, along with supporting literature references and the evaluation rubric. All data are structured for reproducibility and transparency.
DOI: 10.6084/m9.figshare.13208192.v1
title: Mechanical data from compression experiments on sintered glass bead samples

description: The text files are mechanical data from triaxial (TRX) and hydrostatic (HYD) compression experiments performed on cylindric samples of sintered glass beads. The experiments were performed at the Ecole et Observatoire des Sciences de la Terre de Strasbourg following the procedure detailed by Baud et al. (2015), on water saturated samples, under confining pressure ranging from 30 to 190 MPa and a constant pore pressure of 10 MPa. The data files are .txt files of the evolution through the experiment of the following parameters: confining pressure Pc, pore pressure Pp, effective pressure Peff, effective mean stress P, differential stress Q, axial strain, and porosity reduction dPHI. <br>
DOI: 10.6084/m9.figshare.13605839.v1
title: ChIP-seq data KLF5 and Flag-YB-1

description: Flag-YB-1 ChIP-seq in HCC1806 cells; KLF5 ChIP-seq in HCC1806 cells and HCC1937 cells.
DOI: 10.6084/m9.figshare.14579487.v1
title: Supplementary Material for: Birthweight, Childhood Body Mass Index, Height and Growth, and Risk of Polycystic Ovary Syndrome

description: <b><i>Introduction:</i></b> Adult obesity is linked with polycystic ovary syndrome (PCOS), but the importance of body size at ages before PCOS is diagnosed is unknown. <b><i>Objective:</i></b> To investigate associations between a woman’s own birthweight, childhood body mass index (BMI), height and growth patterns in relation to her risk of PCOS. <b><i>Methods:</i></b> We included 65,665 girls from the Copenhagen School Health Records Register, born in the period 1960–1996, with information on birthweight and measured weight and height at the ages of 7–13 years. Overweight was defined using International Obesity Task Force (IOTF) criteria. From the Danish National Patient Register, 606 women aged 15–50 years were identified. Hazard ratios (HRs) and 95% confidence intervals (CIs) were estimated by Cox regression analysis. <b><i>Results:</i></b> Birthweight was not associated with PCOS. At the age of 7–13 years, girls with overweight had a higher risk of developing PCOS than girls without overweight; HR 2.83 (95% CI 2.34–3.42) at age 7 years and 2.99 (95% CI 2.38–3.76) at age 13 years. Furthermore, girls with overweight at both 7 and 13 years had a higher risk of developing PCOS than girls without overweight or overweight at only one age. Height was positively associated with PCOS risk at all ages. Girls who were persistently tall or changed from tall to average height had a higher risk of developing PCOS than girls with average height growth. <b><i>Conclusion:</i></b> Overweight and tall stature in childhood are positively associated with PCOS risk, but birthweight is not.
DOI: 10.6084/m9.figshare.27058672.v1
title: Impact of climatic-meteorological conditions on the Polish wooden cultural heritage: the example of world heritage wooden churches near Krakow

description: Poland has a large number of wooden churches that require special protection under current climatic conditions. In this study, I collected geographic, land use, hydrological, climate, and meteorological data for the area under investigation. Taking the six wooden churches near Krakow, a UNESCO World Heritage site, as examples, I qualitatively and quantitatively explored the impact of climatic conditions on Poland’s wooden cultural heritage. Our findings include: (i) the region is located at the headwaters of Polish rivers, with higher elevation making it less prone to major floods, thus reducing hydraulic impact on wooden churches; (ii) although the fire risk in the area of the wooden churches studied in this research is relatively low compared to Poland as a whole, the buffer zones of the wooden churches consist mainly of forests, grasslands, and farmland, with a low proportion of artificial surfaces and minimal human activity, leading to significant fire risks, notably, the Church of the Archangel Michael in Binarowa faces the greatest fire risk, with a fire weather index near 50%; (iii) under current climatic conditions, the relative humidity around the wooden churches typically exceeds safe levels for wooden structures year-round, only falling within protective ranges during the summer; (iv) based on historical climate conditions over the past 40 years, the relative humidity in September and total annual precipitation in the study area show a significant increasing trend, indicating that the moisture protection pressure on the wooden churches in the area is expected to increase in the future. Finally, I offer specific guidelines for safeguarding and restoring Poland’s wooden churches, focusing on moisture control, insulation, and drainage. This study is expected to offer potential data and theoretical support for future related work.
DOI: 10.6084/m9.figshare.7367273.v2
title: MicroRNA expression profiles across blood and different tissues in cattle

description: Using the miRNAs data generated from 158 samples in three studies, we characterized the miRNA expression profiles of 11 bovine tissues, sera and exosomes.
DOI: 10.6084/m9.figshare.12714152.v1
title: change detection datasets for dual-phase remote images

description: The dataset has 370 samples in the training set and 160 samples in the test set. The sample size is 572*572, time series length of the sample is 2, and the bands are red, green, blue and near-infrared bands. The original data is the Landsat data on July 15, 2009 and July 3, 2019 in the middle and lower reaches of the Tahe River. The resolution of the data is 30m. The semantic change categories are changes between building, road, farmland, water body, desert and woodland. There are 27 categories.
DOI: 10.6084/m9.figshare.21920679.v2
title: Natural vegetation biomass and the dimension of forest quality in tropical agricultural landscapes

description: Data and code <strong>“Natural vegetation biomass and the dimension of forest quality in tropical agricultural landscapes”</strong> - <strong>Ecological Applications</strong>
DOI: 10.6084/m9.figshare.26231087.v1
title: jGCaMP8 Variants with Improved Expression for <i>Drosophila</i>

description: The jGCaMP8f/m/s suite of sensors were developed by screening variants in primary culture of mammalian neurons.  Although testing in <i>Drosophila</i> showed these sensors also had significant performance improvements in this system, expression levels were consistently lower than jGCaMP7 sensors. In creating the v8 sensors a short (30-amino acid) N-terminal sequence derived from the pRSET bacterial expression vector, thought to be inconsequential, was removed and had no discernible impact in mammalian culture or rodent <i>in vivo</i> work.Adding back the RSET sequence to the jGCaMP8 sensors returned expression and baseline brightness to the level of the jGCaMP7 sensors, while retaining the fast kinetics and high signal-to-noise ratio characteristic of the 8 series <i>in vivo</i>.Based on these observations, we encourage investigators working with jGCaMP8 in <i>Drosophila</i> to use the RSET-restored versions now available at the Bloomington Drosophila Stock Center (Stock Numbers 605071 through 605088), and at Addgene (Plasmid Numbers 218862 through 218867).  Investigators encountering low expression in other model systems should consider making this modification in their system.
DOI: 10.6084/m9.figshare.24783771.v1
title: fsh_perFish_06-01-2022_namemod.csv

description: fsh_perFish_06-01-2022_namemod.csv is the combined provisional (2016-2021) dataset for all NEON aquatic sites, and includes manually modified names and justifications. Additional details on these changes can be found in the manuscript supplementary materials for the manuscript "Abiotic variables drive different aspects of fish community trait variation and species richness across the continental United States" in Journal of Animal Ecology (2025).
DOI: 10.6084/m9.figshare.27930111.v1
title: Fall Risk Assessment - Data Set

description: Excel Sheet for Fall Risk Assesment
DOI: 10.6084/m9.figshare.28124630.v1
title: This file compiles all supplementary data related to the published manuscript entitled 'Novel Plasmodium falciparum Kelch13 Polymorphisms in Cameroon with Structural and Physicochemical Impact'.

description: <i>The recent emergence of Plasmodium falciparum (Pf) parasites resistant to artemisinin-based combination therapies (ACT) in Africa has outlined the need for continuous molecular surveillance of artemisinin partial resistance. Here, the genetic polymorphism in the Kelch 13 gene (pfk13) and its structural impact were analyzed. PfDNA was extracted from dried blood spots of symptomatic and asymptomatic individuals living in different epidemiological facets of Cameroon. The pfk13 gene was amplified by nested polymerase chain reaction, and amplicons were sequenced to detect single nucleotide polymorphisms (SNPs). The evolutionary history and the impact of the polymorphisms on physicochemical properties, structure, and function of the pfK13 protein were appraised using various in silico models. A total of ten SNPs were identified in this study, of which five non-synonymous SNPs have not been previously reported (L647F, D648V, N657S, K658R, and L663P). The genetic diversity of pfk13 sequences was low, and the pfk13 gene evolved under the neutral model. Some mutations, especially L663P, appeared to affect the function and structure of the pfK13 protein. Analysis of the physicochemical properties of the Cameroonian pfK13 protein sequences revealed slight changes in the solvent-accessible surface area, isoelectric point, and hydrophobicity. The results support the ongoing use of ACTs in the study areas, given the absence of validated SNPs associated with artemisinin partial resistance. Computational findings suggest a possible deleterious effect of some novel SNPs on the pfK13 structure and/or function.</i>
DOI: 10.6084/m9.figshare.22280884.v1
title: Meyer et al. 2023. Cell Host & Microbe. Conspecific versus heterospecific transmission shapes host specialization of the phyllosphere microbiome. https://doi.org/10.1016/j.chom.2023.11.002

description: These are the data from Meyer et al. 2023. Cell Host & Microbe. Conspecific versus heterospecific transmission of bacteria between plants shapes host specialization of the phyllosphere microbiome. Please cite the paper when using these data. Article DOI: https://doi.org/10.1016/j.chom.2023.11.002There are four main experiments designed to test the effects of microbiome transmission between the same host species (conspecific) vs between different host species (heterospecific). These are 1) the main passaging experiment, in which microbiomes were passaged for 6 experimental month-long passages, 2) the specialization assay (aka follow-up 2) where microbiomes were competed using community coalescence, 3) the generalism common garden experiment (aka follow-up 1), where microbiomes were inoculated onto novel host plants, and 4) RNAseq of the specialization experiment, to test whether host specialization of microbiomes influences differential gene expression in the leaf tissue of the recipient host species.Included are raw genetic sequences of the V5-V7 region of the bacterial 16S rRNA gene derived from experimental leaf surfaces of tomato, Solanum pimpinellifolium, pepper, bean, canola, sorghum, and corn plants.Included in this archive are:Raw sequence data (RawFASTQ_PassagingFollow1.zip, RawFASTQ_PassagingFollow2.zip)Reproducible R script (MeyerEtAl2023.R)R objects corresponding to script MeyerEtAl2023.R (.RDS)Data for generating certain plots (PermanovaRValues_Passaging_edit_noT.txt)Sample metadata (SampleInfoPassagingAndFollowup1_edit.txt, MetaDataPassagingFollow2, RNAseqMetaData) corresponding to MeyerEtAl2023.RPhylogenetic Tree file for sample ASVs (PhyloTreePassaging.tre)Plant health and fitness data (FruitFlowerTimeSeriesFollow2.txt, PassagingFollow2TomatoData)ddPCR (microbial abundance) data (R_CFU_HarvestvInoculum.csv)R script for rarefication function (Rarefy_mean.R) and read tree function (read.newick.R)RNAseq concatanated gene counts (Raw RNAseq fastq files available at NCBI BioProject database, Project ID: PRJNA1012508)Individual ASV tables for differential ASV abundance analysis in MeyerEtAl2023.R (data-to-send.zip)
DOI: 10.6084/m9.figshare.880756.v5
title: Microcystin congeners described in the literature

description: This list aims at being the most comprehensive list of published microcystins available.
DOI: 10.6084/m9.figshare.14283757.v1
title: Student and Faculty Perspectives of Inclusive Teaching Practices in Teacher Training Degree Programs

description: ABSTRACT: This study focuses on student and faculty perceptions about inclusive instructional practices in teacher training degree programs in three different universities (two in Spain and one in the USA). We synthetize this framework into four dimensions: (a) identifying students’ needs and strengths, (b) accessibility to physical spaces and materials, (c) methodologies and strategies to engage students, and (d) valuing diversity as a resource. A mixed methodology (questionnaire and interviews) was used to collect the information. Six hundred fifty-three university students and 35 faculty from the different education colleges participated in this study. Findings reveal the perceptions of students and faculty regarding both effective practices for diverse inclusive university classrooms as well as barriers to inclusion that affect learning in the participating institutions. Results reflect serious discrepancies between students and faculty members.
DOI: 10.6084/m9.figshare.22177382.v2
title: Data Set: Density stratification and buoyancy evolution in pyroclastic density currents

description: This dataset includes data collected during laboratory experiments and complementary numerical simulations. Data from the laboratory experiments includes Excel file with particle concentration and particle size distribution data as collected by gravity fed siphons, as well MATLAB files containing raw velocity and associated timeseries data collected by Profiling Acoustic Doppler Velocimeters and Acoustic Doppler Profilers. Data from the simulations includes MATLAB files containing raw velocity, particle concentration, and fluid density data.
DOI: 10.6084/m9.figshare.22338193.v2
title: MicroRNA and gut microbiome of soybean pod-sucking stinkbug Riptortus pedestris (Hemiptera: Alydidae)

description: Data set of the stinkbug Riptortus pedestris.
DOI: 10.6084/m9.figshare.7016204.v1
title: GO_meera_R.mucronata.txt

description: Gene Ontology annotations for <i>de novo</i> assembled transcriptome of a mangrove species, <i>Rhizophora mucronata</i> was retrieved from gene ontology consortium based on UniProtKB keyword mapping. The total number of GO terms identified in molecular function (F), biological process (P) and cellular component (C) category are 2436, 1995 and 1435 respectively.
DOI: 10.6084/m9.figshare.12933023.v1
title: Supplementary table 4

description: Supplementary table 4 generated after data filtering and post normalisation. This was the table used to base all further statistical analysis.
DOI: 10.6084/m9.figshare.13105481.v3
title: MEF to induced endoderm progenitors reprogramming

description: scRNA-seq time-series dataset of mouse embryonic fibroblast (MEF) reprogramming to induced endoderm progenitors (iEPs)assayed using Dropseq and 10x Genomics. Contains 8 time points spanning days 0-28 during reprogramming. Total cell number is 104,887.<br>This dataset contains raw spliced and unspliced counts estimated using the velocyto pipeline (La Manno et al., Nature 2018) that can be used to compute RNA velocity. Further, this dataset contains clonal information from CellTagging.<br>Please cite the original publication: https://doi.org/10.1038/s41586-018-0744-4
DOI: 10.6084/m9.figshare.21746867.v2
title: Child sexual abuse among LGBTQ+ individuals in India

description: This dataset is on the prevelance of child sexual abuse among a sample of LGBTQ+ individuals in India (n = 206).<br>The publication associated with this data set it is Krishnan, S. R. G., Godfrey, A., Daly, C., & Avinash, A. (2024). Child Sexual Abuse and Wellbeing Among LGBTQ + Individuals: The Role of Family in Healing. <i>LGBTQ+ Family: An Interdisciplinary Journal</i>, <i>0</i>(0), 1–14. https://doi.org/10.1080/27703371.2024.2327056<br><b>PLEASE CITE THIS ARTICLE IN CASE YOU FIND THE ARTICLE OR DATA USEFUL. </b><b>Original Manuscript (Pre-print)- https://drive.google.com/file/d/1QJfSZfFM64gnJ3FmyusQxj_dA_L3KMOK/view?usp=drive_link</b>
DOI: 10.6084/m9.figshare.28651907.v1
title: Shared files for "Multiplexing of Cognitive Encoding by Oculomotor Networks Leads to Incidental Gaze Shifts" by Matthew C. Rosen and David J. Freedman, PNAS (2025) in press.

description: Please find here data used to generate the figures in Rosen and Freedman, PNAS (2025).
DOI: 10.23645/epacomptox.7134761.v2
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.20352686.v1
title: Cobalt(II) and magnesium(II) complexes with 1,3-pdta-type of ligands: influence of an alkyl substituent at 1,3-propanediamine chain on the structural and antimicrobial properties of the complex

description: To investigate how modification in the structure of 1,3-propanediamine chain of 1,3-pdta (1,3-propanediamine-<i>N,N,N′,N′</i>-tetraacetate) ligand affects the structural and biological properties of the corresponding metal complexes, two new octahedral complexes, [Co(H<sub>2</sub>O)<sub>5</sub>Co(2,2-diMe-1,3-pdta)]·H<sub>2</sub>O (<b>1</b>) and [Mg(H<sub>2</sub>O)<sub>5</sub>Mg(2,2-diMe-1,3-pdta)]·1.5H<sub>2</sub>O (<b>2</b>) (2,2-diMe-1,3-pdta = 2,2-dimethyl-1,3-propanediamine-<i>N,N,N′,N′</i>-tetraacetate), were synthesized and characterized by IR spectroscopy and single-crystal X-ray diffraction analysis. Additionally, UV-Vis and NMR spectroscopic methods were applied for the characterization of <b>1</b> and <b>2</b>, respectively. Crystallographic data indicate that these complexes contain 2,2-diMe-1,3-pdta coordinated to the metal ion through 2 N and 4 O atoms forming [M(H<sub>2</sub>O)<sub>5</sub>M′(2,2-diMe-1,3-pdta)] complex unit (M, M′ = Co(II), Co(II) (<b>1</b>) and M, M′ = Mg(II), Mg(II) (<b>2</b>)), which is composed of [M′(2,2-diMe-1,3-pdta)]<sup>2−</sup> and [M(H<sub>2</sub>O)<sub>5</sub>O]<sup>2+</sup> octahedra bridged by one of the axial carboxylate groups. The antimicrobial activities of <b>1</b> and <b>2</b> were evaluated against different bacteria and <i>Candida</i> spp., while their cytotoxic effect was tested on the normal human lung fibroblasts (MRC-5). The ability of <b>1</b> and <b>2</b> to inhibit formation of <i>C. glabrata</i> biofilms was also assessed. The obtained structural parameters and biological properties of the two complexes were compared to Co(II) and Mg(II) complexes with 1,3-pdta ligand.
DOI: 10.6084/m9.figshare.23635608.v1
title: P<strong>earl millet root-associated-microbiota</strong>

description: We studied the composition and the role of pearl millet root exudates in shaping the rhizosphere microbiota and in the soil aggregation.
DOI: 10.6084/m9.figshare.26878594.v1
title: ANPP and other metrics.xlsx

description: Above-ground net primary productivity, phenological events and species composition from 2018 to 2020 in the reciprocal transplant experiment in alpine grasslands