cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive23290.20170829.2
title: Salinicoccus qingdaonensis Qu et al. 2012

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive23291.20170829.2
title: Salinicoccus halitifaciens Ramana et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive23292.20170829.2
title: Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive23293.20170829.2
title: Staphylococcus epidermidis (Winslow and Winslow 1908) Evans 1916

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive24209.20170829.2
title: Dactylosporangium siamense Thawai and Suriyachadkun 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive24210.20170829.2
title: Micromonospora sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive24211.20170829.2
title: Micromonospora sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive24212.20170829.2
title: Micromonospora schwarzwaldensis Gurovic et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive24213.20170829.2
title: Micromonospora kangleipakensis Nimaichand et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.23265018.v1
title: Additional file 5 of MPC-n (IgG) improves long-term cognitive impairment in the mouse model of repetitive mild traumatic brain injury

description: Additional file 5: Table S3. All differentially expressed genes between the MPC-ngroup and the rmTBI group.
DOI: 10.6084/m9.figshare.23265047.v1
title: Additional file 1 of Are patients with preoperative synovitis suitable for unicompartmental knee arthroplasty? Magnetic resonance imaging evidence from a retrospective cohort study

description: Additional file 1.
DOI: 10.17632/rdxwzz2pkb.1
title: Regulation of Histidine Metabolism by Lactobacillus Reuteri Mediates the Pathogenesis and Treatment of Ischemic Stroke

description: Clinical Metabolomics
DOI: 10.6084/m9.figshare.23265002.v1
title: Additional file 8 of NPM3 as a novel oncogenic factor and poor prognostic marker contributes to cell proliferation and migration in lung adenocarcinoma

description: Additional file 8: Supplementary Table S5. The genes negatively associated with NPM3 expression.
DOI: 10.6084/m9.figshare.8073038
title: MOESM11 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 11: Table S10. Primary analysis of the identified differentially expressed novel miRNAs (water buffalo/yellow cattle).
DOI: 10.6084/m9.figshare.12781386
title: Additional file 1 of Delirium and encephalopathy in severe COVID-19: a cohort analysis of ICU patients

description: Additional file 1. Supplemental information
DOI: 10.6084/m9.figshare.23265212
title: Additional file 3 of Genomic and epigenomic determinants of heat stress-induced transcriptional memory in Arabidopsis

description: Additional file 3: Supplementary Data 2. ChIP-seq clustering genes.
DOI: 10.6084/m9.figshare.14354989
title: Additional file 1 of Panretinal photocoagulation after or prior to intravitreal conbercept injection for diabetic macular edema: a retrospective study

description: Additional file 1: Supplementary file 1. Mean BCVA and CSMT at each follow-up of the two groups. Supplementary file 2. Detailed data of BCVA and CSMT at each follow-up of the two groups.
DOI: 10.6084/m9.figshare.14354989.v1
title: Additional file 1 of Panretinal photocoagulation after or prior to intravitreal conbercept injection for diabetic macular edema: a retrospective study

description: Additional file 1: Supplementary file 1. Mean BCVA and CSMT at each follow-up of the two groups. Supplementary file 2. Detailed data of BCVA and CSMT at each follow-up of the two groups.
DOI: 10.6084/m9.figshare.8073053
title: MOESM13 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 13: Table S11. Profiles of five known differentially expressed miRNAs and their targets.
DOI: 10.6084/m9.figshare.8073059.v1
title: MOESM14 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 14: Table S12. Functional enrichment analysis of the predicted targeted genes. Biological process of targets in schistosomes of five known differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.8073062
title: MOESM15 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 15: Table S13. Cellular components of targets in schistosomes of five known differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.21171538.v1
title: Additional file 1 of EPHA5 mutation was associated with adverse outcome of atezolizumab treatment in late-stage non-small cell lung cancers

description: Additional file 1: Table S1. Detailed information of EPHA5 mutations in NSCLCs from MSKCC cohort.
DOI: 10.17632/66ms37y66x.1
title: Data for: A genome-wide CRISPR/Cas9 screen reveals that riboflavin regulates hydrogen peroxide entry into HAP1 cells

description: CRISPR screen data for hydrogen peroxide mediated cell death
DOI: 10.6084/m9.figshare.19069906.v1
title: Additional file 2 of Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M

description: Additional file 2. Additional data files
DOI: 10.6084/m9.figshare.25212779
title: Details of the Cell specific Metabolic Reactions and Metabolites and Stoichiometry matrix from Metabolic reprogramming and signaling cross-talks in tumor-immune interaction: A system-level exploration

description: supplementary_file2
DOI: 10.6084/m9.figshare.25212779.v1
title: Details of the Cell specific Metabolic Reactions and Metabolites and Stoichiometry matrix from Metabolic reprogramming and signaling cross-talks in tumor-immune interaction: A system-level exploration

description: supplementary_file2
DOI: 10.17632/47twnk5dsh.1
title: Results of chemical analysis of soil properties at the emergency crash site of the launch vehicle ‘Soyuz-FG’ in Kazakhstan

description: This data set contains information about 227 samples taken at the sites under con-sideration in the Ulytau region of Kazakhstan:
-in October 2018 (in the first days after the accident; ‘2018’ in the columns of the table in the Supplementary file),
-in October 2019 (one year after the accident; ‘2019’ in the columns of the table in the Supplementary file),
-in September 2022 (4 years after the accident; ‘a’ in the columns of the table in the Supplementary file),
-in May 2023 (4.5 years after the accident; ‘s’ in the columns of the table in the Supplementary file).
The vast majority of samples were analyzed in two laboratories independently.
DOI: 10.17632/8j268m8pr7.1
title: Arabic 911 dataset

description: Data can serve as an input for the machine learning process. It directly analyzes emergency calls in Arabic to direct the report to the concerned party.
DOI: 10.6084/m9.figshare.22619699
title: Additional file 5 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 5: Table S4. Gene list of DEGs under RALF stimulation.
DOI: 10.6084/m9.figshare.21171541.v1
title: Additional file 2 of EPHA5 mutation was associated with adverse outcome of atezolizumab treatment in late-stage non-small cell lung cancers

description: Additional file 2: Table S2. Detailed information of gene mutations in NSCLCs from OAK and POPLAR clinical trials.
DOI: 10.6084/m9.figshare.12781431.v1
title: Additional file 2 of USP18 promotes cell proliferation and suppressed apoptosis in cervical cancer cells via activating AKT signaling pathway

description: Additional file 2.
DOI: 10.6084/m9.figshare.8073086
title: MOESM2 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 2: Table S1. The information related to the precursor miRNAs of predicted miRNAs.
DOI: 10.6084/m9.figshare.8073086.v1
title: MOESM2 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 2: Table S1. The information related to the precursor miRNAs of predicted miRNAs.
DOI: 10.17632/ysryk6cp9y.1
title: Ma et al, PNAS 2024 "Deficiency of factor-inhibiting HIF creates a tumor-promoting immune microenvironment" Supplementary Figures

description: Please find the raw data associated with the supplementary figures 1-X in the publication 'Deficiency of factor-inhibiting HIF creates a tumor-promoting immune microenvironment' - PNAS 2024.
DOI: 10.6084/m9.figshare.14355286
title: Additional file 12 of Diversity of short interspersed nuclear elements (SINEs) in lepidopteran insects and evidence of horizontal SINE transfer between baculovirus and lepidopteran hosts

description: Additional file 12: Table S2. The databases of NCBI used for Blast searches, including 8 WGS databases, 3 EST databases and 2 TSA databases as well as the Nr/nt database.
DOI: 10.6084/m9.figshare.23265221.v1
title: Additional file 6 of Genomic and epigenomic determinants of heat stress-induced transcriptional memory in Arabidopsis

description: Additional file 6: Supplementary Data 5. Venn overlap gene list.
DOI: 10.6084/m9.figshare.8073092
title: MOESM3 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 3: Table S2. Sequences of the primers used for qRT-PCR and sja-miR-219-5p mimics or inhibitors used for dual-luciferase reporter assays. Sequences of the primers used for qRT-PCR of the five differentially expressed miRNAs.
DOI: 10.6084/m9.figshare.22619699.v1
title: Additional file 5 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 5: Table S4. Gene list of DEGs under RALF stimulation.
DOI: 10.6084/m9.figshare.23265209.v1
title: Additional file 2 of Genomic and epigenomic determinants of heat stress-induced transcriptional memory in Arabidopsis

description: Additional file 2: Supplementary Data 1. Statistical analyses.
DOI: 10.17632/nz5zh5vyv7.1
title: Original western blot data of “YAP-mediated GPER signaling impedes proliferation and survival of prostate epithelium in benign prostatic hyperplasia” (Data S1)

description: All the western blot results from our paper "YAP-mediated GPER signaling impedes proliferation and survival of prostate epithelium in benign prostatic hyperplasia" were included in this supplementary data, which contains images of all original western blots, encompassing three experimental replicates.
DOI: 10.6084/m9.figshare.14355034.v1
title: Additional file 16 of Roles of the 14-3-3 gene family in cotton flowering

description: Additional file 16: Table S8. PCR primers used in this study.
DOI: 10.6084/m9.figshare.14355769.v1
title: Additional file 8 of Loss of splicing factor IK impairs normal skeletal muscle development

description: Additional file 8: Table S2. The raw data of myod1 and pax7a in RNA-seq.
DOI: 10.6084/m9.figshare.21171541
title: Additional file 2 of EPHA5 mutation was associated with adverse outcome of atezolizumab treatment in late-stage non-small cell lung cancers

description: Additional file 2: Table S2. Detailed information of gene mutations in NSCLCs from OAK and POPLAR clinical trials.
DOI: 10.6084/m9.figshare.8073098.v1
title: MOESM4 of Comparative analysis of microRNA expression profiles of adult Schistosoma japonicum isolated from water buffalo and yellow cattle

description: Additional file 4: Table S3. Sequences of the primers used for qRT-PCR of the 11 differentially expressed targets.
DOI: 10.17632/ks58rfrbwg.1
title: Land Bank Cogent Social Sciene

description: This data include about Land Bank, Land Mafia, and Land acquisition source
DOI: 10.5281/zenodo.10653764
title: Supporting Data for "Mapping the lipid binding regions of the antifungal protein NFAP2 exploiting model membranes"

description: Molecular dynamics input files for the paper.

Abstract of the paper:

Fungal infections with high mortality rates represent an increasing health risk. The Neosartorya (Aspergillus) fischeri antifungal protein 2 (NFAP2) is a small, cysteine-rich, cationic protein exhibiting potent anti-Candida activity. As the underlying mechanism, pore formation has been demonstrated, however, molecular level details on its membrane disruption action are lacking. Herein we addressed lipid binding of NFAP2 using a combined computational and experimental approach on simple lipid compositions with various surface charge properties. Simulation results revealed binding preferences for negatively charged model membranes where selectivity is mediated by anionic lipid components enriched at the protein binding site but also assisted by zwitterionic lipid species. Several potential binding routes initiated by various anchoring contacts were observed, which resulted in alternative binding modes with NFAP2 residing on the membrane surface. Region 10NCPNNCKHKKG20 of the flexible N-terminal part of the protein showed potency to insert into the lipid bilayer, where the disulfide bond stabilized short motif 11CPNNC15 could play a key role, assisted by the electrostatic effects of the nearby lysines. Combined data demonstrated that the solution conformation was not perturbed markedly upon membrane interaction and the folded part of the protein also contributes to stabilizing the bound state. Data also highlighted that binding of NFAP2 to lipid vesicles is sensitively affected by environmental factors like ionic strength. Electrostatic interactions driven by anionic lipid clustering were found pivotal explaining reduced membrane activity observed at high salt conditions. Experimental data supported the lipid selective binding mechanisms, and pointed to salt-dependent effects, particularly to protein-assisted vesicle aggregation at low ionic strength. Our findings can contribute to the development of NFAP2-based anti-Candida agents and studies aiming at future medical use of peptide-based natural antifungal compounds.
DOI: 10.5281/zenodo.10653765
title: Supporting Data for "Mapping the lipid binding regions of the antifungal protein NFAP2 exploiting model membranes"

description: Molecular dynamics input files for the paper.

Abstract of the paper:

Fungal infections with high mortality rates represent an increasing health risk. The Neosartorya (Aspergillus) fischeri antifungal protein 2 (NFAP2) is a small, cysteine-rich, cationic protein exhibiting potent anti-Candida activity. As the underlying mechanism, pore formation has been demonstrated, however, molecular level details on its membrane disruption action are lacking. Herein we addressed lipid binding of NFAP2 using a combined computational and experimental approach on simple lipid compositions with various surface charge properties. Simulation results revealed binding preferences for negatively charged model membranes where selectivity is mediated by anionic lipid components enriched at the protein binding site but also assisted by zwitterionic lipid species. Several potential binding routes initiated by various anchoring contacts were observed, which resulted in alternative binding modes with NFAP2 residing on the membrane surface. Region 10NCPNNCKHKKG20 of the flexible N-terminal part of the protein showed potency to insert into the lipid bilayer, where the disulfide bond stabilized short motif 11CPNNC15 could play a key role, assisted by the electrostatic effects of the nearby lysines. Combined data demonstrated that the solution conformation was not perturbed markedly upon membrane interaction and the folded part of the protein also contributes to stabilizing the bound state. Data also highlighted that binding of NFAP2 to lipid vesicles is sensitively affected by environmental factors like ionic strength. Electrostatic interactions driven by anionic lipid clustering were found pivotal explaining reduced membrane activity observed at high salt conditions. Experimental data supported the lipid selective binding mechanisms, and pointed to salt-dependent effects, particularly to protein-assisted vesicle aggregation at low ionic strength. Our findings can contribute to the development of NFAP2-based anti-Candida agents and studies aiming at future medical use of peptide-based natural antifungal compounds.
DOI: 10.6084/m9.figshare.19596270.v1
title: Additional file 2 of The impact of medical insurance reimbursement on postoperative inflammation reaction in distinct cardiac surgery from a single center

description: Additional file 2: Supplemental file 2. Entitled MV was the data of the patients received mitral valve procedure.
DOI: 10.6084/m9.figshare.14355451
title: Additional file 1 of A novel tp53-associated nomogram to predict the overall survival in patients with pancreatic cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.12257837.v1
title: Additional file 12 of Integration of sRNA, degradome, transcriptome analysis and functional investigation reveals gma-miR398c negatively regulates drought tolerance via GmCSDs and GmCCS in transgenic Arabidopsis and soybean

description: Additional file 12: Table S3. Differentially expressed miRNAs for different treatment durations in leaves and roots.
DOI: 10.6084/m9.figshare.14355310.v1
title: Additional file 8 of Diversity of short interspersed nuclear elements (SINEs) in lepidopteran insects and evidence of horizontal SINE transfer between baculovirus and lepidopteran hosts

description: Additional file 8: Table S1. The copies of PxSE1 in the genome of P. xylostella.
DOI: 10.6084/m9.figshare.12257810
title: Additional file 6 of Insight to shape of soil microbiome during the ternary cropping system of Gastradia elata

description: Additional file 6: Table S3. The relationship of changed microbiome at different compartment rhizoshphere at genus level.
DOI: 10.6084/m9.figshare.21172171
title: Additional file 1 of Pyroptosis related genes signature predicts prognosis and immune infiltration of tumor microenvironment in hepatocellular carcinoma

description: Additional file 1.
DOI: 10.6084/m9.figshare.14355040.v1
title: Additional file 2 of Roles of the 14-3-3 gene family in cotton flowering

description: Additional file 2: Table S2. Predicted G. herbaceum, G. arboreum, G. raimondii, and G. hirsutum GRF proteins with genome identifiers.
DOI: 10.6084/m9.figshare.12781386.v1
title: Additional file 1 of Delirium and encephalopathy in severe COVID-19: a cohort analysis of ICU patients

description: Additional file 1. Supplemental information
DOI: 10.15156/bio/sh2900608.08fu
title: SH2900608.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2900609.08fu
title: SH2900609.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2900610.08fu
title: SH2900610.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.