cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3397603.v9
title: Custom toolbars and mini applications with Action Bar

description: The Action Bar ImageJ plugin facilitates creation of additional custom toolbars, using simple macro-like toolbar description file. Readers will learn how to setup a basic action bar, and how to use the latest features of this plugin. Button actions are basically macro programs, so action bars can interact with all standard ImageJ components. Primary use of these custom toolbars is to keep at hand often used commands, plugins and macros, but toolbars sets can be turned into mini applications with minimal effort. With these highly task-oriented applications, end users can focus on just using a simple system with absolutely no prior knowledge of ImageJ. This paper is aimed at ImageJ users with some previous experience with the macro language. First version was published in June 2006, and this is the support material for a workshop I first gave at the 2008 ImageJ conference in Luxembourg.
DOI: 10.6084/m9.figshare.20138330.v1
title: Date.zip

description: Date for "Dual-action icariin-containing thermosensitive hydrogel for wound macrophage polarization and hair-follicle neogenesis" . Further inquiries can be directed to the corresponding authors.
DOI: 10.6084/m9.figshare.5890786.v1
title: Aberration elimination for full FOV reconstruction

description: Comparison of full FOV reconstruction using FPM and mcFPM
DOI: 10.17632/kj58zkdmt7
title: qwViz: Visualisation of quantum walks on graphs

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract qwViz is a software package for interactive visualisation of the time-evolution of quantum walks on arbitrarily complex graphs. The package is written in C and uses OpenGL to generate graphics in real-time. The qwViz package can be used to directly simulate discrete-time quantum walks on undirected graphs when provided with the adjacency matrix of the graph. For more detailed studies, qwViz can also be used to visualise externally generated quantum walk data written in an XML-based file forma... Title of program: qwViz Catalogue Id: AEJN_v1_0 Nature of problem Simulation and visualisation of quantum walks on arbitrarily complex undirected graphs Versions of this program held in the CPC repository in Mendeley Data AEJN_v1_0; qwViz; 10.1016/j.cpc.2011.06.002
DOI: 10.6084/m9.figshare.7429109.v4
title: caregiver burden, time of caring and dependence

description: The sample is 135 informal caregivers, some of them take care more than one dependent person. Data was collected between 2014-2016.
DOI: 10.6084/m9.figshare.25650696.v1
title: PSSES_addition_data.zip

description: 附加数据和阈值映射。
DOI: 10.1184/r1/12964481.v1
title: E-thos Project: Climate Change

description: This repository contains materials associated with a project which explores appeals to expertise by climate scientists in hearings before Congress. These materials include plain text files in UTF-7 and ASCII format of testimonies by individual scientists in hearings from 1985-2013 as well as meta-data about each of the hearings and scientific witnesses in the corpus.
DOI: 10.17632/x7f5y8mw59
title: Gender

description: This research data describes gender
DOI: 10.6084/m9.figshare.14130584.v6
title: Data of Anti Hypertensive in COVID-19

description: This dataset contains patients history, physical examination, laboratory data, and chest x-ray imaging, history using antihypertensive drugs in pandemic COVID-19<br>
DOI: 10.6084/m9.figshare.23266445.v1
title: <strong>The Prospective Effects of Coping Strategies on </strong> <strong>Mental Health and Resilience at Five Months After HSCT</strong>

description: Dataset contains average score and means of coping strategies and mental health outcomes. It also includes sociodemographic and medical variables.
DOI: 10.6084/m9.figshare.27302283.v1
title: Supplementary Material for: “The Biggest Struggle:” Navigating Trust and Uncertainty in Genetic Variant Interpretation

description: Introduction: As the utility of genomic sequencing increases, its use in healthcare will continue to expand beyond expert clinics towards non-specialist practices such as primary care. At the same time, discordance in genetic variant identification and classification between laboratories remains a concern for the field. This research assesses how clinicians with and without genetics expertise understand and trust genetic test results, underscoring how variation in the handling of genetic test results can have real impact on patient care.
Methods: We conducted 40 interviews with genetics experts, including clinical geneticists and genetic counselors, and non-expert clinicians including primary care providers and cardiologists. 
Results: Clinical geneticists and genetic counselors reported spending significant time assessing the validity of results from genetic testing laboratories, conversing with laboratories about those results, and potentially reinterpreting results. Conversely, primary care providers and cardiologists without specific genetics expertise reported high levels of trust in lab accuracy and variant interpretation, and did not reassess results.
Conclusion: We find significant variation in how genetics experts and non-experts understand the trustworthiness of genetic laboratory reports. This variation could lead to differences in patient care between clinical settings and requires additional guidance for clinicians regarding the handling of genetic test results.
DOI: 10.6084/m9.figshare.28852634.v1
title: Exploring Innovation-Driven Machine Learning Models

description: Underlying data of the project.
DOI: 10.21233/hg3z-j308
title: Banbyeoncheon River ostracode surface sample dataset

description: Raw data for the Banbyeoncheon River ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.9qy2jg
title: Occurrence Download

description: A dataset containing 4514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Falcaria lacertinaria (Linnaeus, 1758)"
 ]
}

 The dataset includes 4514 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009346-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21129769.v1
title: Supplementary Material for: Impact of Potentially Inappropriate Medications on Kidney Function in Chronic Kidney Disease: Retrospective Cohort Study

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) represents a major public health burden. Potential inappropriate medications (PIMs) are common in patients with CKD. However, its impact on kidney outcomes has not been adequately elucidated for middle-aged patients. This study aimed to clarify the prescription status of PIMs for middle-aged patients with CKD and its effect on kidney function decline. <b><i>Methods:</i></b> Using an administrative claims database in Japan, a retrospective cohort study was conducted among Japanese patients with CKD (aged 20–74) who underwent annual health check-ups at least three times between April 2008 and December 2020. PIM exposure was defined as medications to be avoided in older adults as defined by the 2019 American Geriatrics Society Beers Criteria. The association between the number of prescribed PIMs and the decline in estimated glomerular filtration rate (eGFR) was examined using logistic regression models adjusted for clinical characteristics and laboratory variables. <b><i>Results:</i></b> A total of 43,143 patients with CKD (mean age 57 years, median eGFR: 52 mL/min/1.73 m<sup>2</sup>) were analyzed, and approximately 40% of the patients were prescribed one or more PIMs. The most commonly prescribed PIMs were pain medications (18.5%), followed by gastrointestinal medications (9.8%), central nervous system medications (8.6%), and cardiovascular medications (8.6%). After adjustment, exposure to 2 or ≥3 PIMs was associated with an increased risk of 30% eGFR decline (adjusted odds ratio 1.71 [95% confidence interval, 1.24–2.37] and 1.65 [95% confidence interval, 1.08–2.52], respectively) as compared to the control group. <b><i>Conclusion:</i></b> This study showed that middle-aged patients with CKD who were prescribed ≥2 PIM had an increased risk of progression of CKD. Further studies are needed to analyze whether deprescribing steps contribute to reduce PIM prescriptions and prevent CKD progression.
DOI: 10.17632/rdw3fk6cng
title: AnxA6 SUMOylation facilitates EGFR-PKCα complex formation to suppress squamous epithelial cancer growth

description: MS/MS spectra of AnxA6 peptide DAYERDLEADIIGDTSGHFQK156, YEK299SLYSMIK, NDTSGEYK314K in HCD fragmentation mode.
DOI: 10.6084/m9.figshare.19932455.v1
title: Simulations of alkanethiol AuNPs

description: Supporting information for RSC Advances
DOI: 10.6084/m9.figshare.22229563.v1
title: Fitness data

description: Data collected from feeding bioassays included in manuscript
DOI: 10.6084/m9.figshare.27619755.v1
title: STARmap.h5ad

description: Raw mouse V1 neocortex dataset from Wang et al. (<i>Science</i>, 2018), containing 1 slice replicate with the layer labels.
DOI: 10.17632/sksdk3z5dk
title: Fate challenge purges the regulatory T cell repertoire of unstable clones - supplementary tables S.Junius et al.

description: paper: "Fate challenge purges the regulatory T cell repertoire of unstable clones" Steffie Junius, Adamantios V. Mavrogiannis, Pierre Lemaitre, Margaux Gerbaux, Frederik Staels, Vanshika Malviya, Oliver Burton, Raul Yhossef Tito Tadeo, Jeroen Raes, Joost P. M. van Meerwijk, Stephanie Humblet-Baron, Adrian Liston*, Susan M. Schlenner* Folder single-cell RNA sequencing - Fig. 4: Purpose: identify differentially expressed genes between ex-Treg obtained 5, 10, or 15 days post-adoptive transfer into a lymphopenic environment compared to ex vivo Treg in order to identify Treg subset with heightened instability. Method: Treg from Foxp3YFP-Cre Rosa26RFP (PMID: 18387831, PMID: 17171761) were co-injected with congenically-disparated naive T cells in a 1:1 ratio into Rag1KO mice and ex-Treg were sorted at 15 days, 10 days or 5 days post-transfer. As a control, ex vivo Treg was sorted from Foxp3YFP-Cre Rosa26RFP (d0 sample). Next, samples were stained with multiplexing antibodies using the BD Single-Cell Multiplexing Kit (BD biosciences), then pooled and stained with the following oligonucleotide-conjugated antibodies: anti‑CD25 (PC61), anti-CD44 (IM7), anti-CD62L (MEL-14), anti-GITR (DTA-1), anti-CD4 (RM4-5), anti‑TCRb (H57-597), anti‑CD69 (H1.2F3), anti‑TIGIT (1G9), anti‑CD95 (Jo2), anti‑CD122 (TM‑1β), anti‑Tim-3 (5D12), anti‑CCR7 (4B12), anti‑CD103 (M290), anti‑CD279 (J43), anti‑CD274 (MIH5), anti‑CD233 (C9B7W), anti‑CD71 (C2), anti‑CD278 (7E7G9), anti‑ITGB7 (M293), anti‑CD137 (1AH2), anti‑CD40 (3/23), anti‑CD3e (145-2C) from BD Biosciences. Single-cell capture and cDNA library preparation was performed using the BD Rhapsody Single-cell analysis system (BD Biosciences), according to the manufacturer’s instructions, using a custom gene panel (591 genes). Sequencing was performed on an Illumina NextSeq500 instrument using a Mid‑Output kit v2.5 (150 cycles, paired-end). Sample demultiplexing, barcode processing, alignment, filtering, UMI counting were done using the standard BD Biosciences Rhapsody analysis pipeline on Seven Bridges (www.sevenbridges.com). Result and conclusion: In this study, we showed that ex-Treg downregulate Treg core-specific genes immediately upon adoptive transfer into a lymphopenic environment. Further, we identified a naïve-like Treg population enriched for unstable Treg clones. Folder microbiome sequencing- Fig S4: Purpose: Analyze diversity in microbial communities within fecal samples of SPF housed mice and SPF mice co-housed with pet store mice (CoH) method: Microbiome sequencing was performed as previously described in Pasciuto et al. (PMID: 32702313) result and conclusion: The microbial communities were different in SPF mice compared to CoH mice; 19 % of the variation on the microbial composition can be explained by this grouping (adonis test, R2 = 0.18791, p = 0.001). Twelve genera were identified with differences in relative abundance, seven enriched and five depleted in CoH mice (q-values &lt; 0.1, Wilcoxon test).
DOI: 10.6084/m9.figshare.13181171.v2
title: Prediction of Dynamic Plasmapause Location using a Neural Network

description: The zip file include our crossing events data and neural network model. Please see readme.txt.
DOI: 10.6084/m9.figshare.13379852.v1
title: The metabolome of an oak tree root colonized by an ectomycorrhizal fungus by FT-ICR-MS analysis

description: The metabolome of mycorrhizal cork oak (<i>Quercus suber</i> L.) roots colonized by the ectomycorrhizal fungus <i>Pisolithus tinctorius</i> was analysed by Fourier Transform Ion Cyclotron Resonance mass spectrometry (FT-ICR-MS). Samples from mycorrhizal and non-mycorrhizal (control) roots were extracted using mixtures of water, methanol and chloroform. Before analysis, samples were diluted 1000-fold and leucine enkephalin was added to be use for internal calibration of each sample spectrum ([M+H]<sup>+</sup> = 556.276575 Da or [M-H]<sup>-</sup> = 554.260925 Da). Extracts from each sample were analysed by direct infusion in an Apex Qe 7-Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometer (FTI-CR-MS, Brüker Daltonics). Spectra were acquired using electrospray ionization (ESI) in positive (ESI<sup>+</sup>) and negative (ESI<sup>-</sup>) modes. Mass spectra were recorded with an acquisition size of 512k, in the 100 to 1000 m/z mass range. Mass spectra were analysed using the software package Data Analysis 5.0 (Brüker Daltonics, Bremen, Germany). Single point calibration was performed with the leucine enkephalin standard, both in positive and negative ionization modes. Mass peak lists (<i>m/z</i> and intensities) were exported at a signal-to-noise ratio of 4. <br><br>
DOI: 10.6084/m9.figshare.7890374.v1
title: gVCF_HG03019

description: 1000 Genomes gVCF mapped to hs37d5 for HG03019. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.6857111.v1
title: Precipitation of uranium from alkaline liqueurs

description: ABSTRACT In Argentina there is uranium with abundant organic matter and variety in quantity of sulfides and carbonates which act as cement or sealing joints. The latter minerals modify directly the choice of metal leaching process for the concentration of uranium. The most beneficial selected process turns out to be the alkaline leaching. Once this process has been finished, using the lixiviante agent such as Na2CO3 NaHCO3 in presence of oxidizing agent, the hexavalent state of uranium as U3O8 has been achieved. In this research the experimental design is proposed at the laboratory level, in order to obtain the precipitation of uranium from alkaline leach liquors using two different precipitation mechanisms. One of them uses a strong oxidizing agent such as excessive hydrogen peroxide. Stoichiometrically, 0.9 g of H2O2 were used, obtaining the uranium precipitation as UO2*2H2O. The working variables are lightly acidic pH values, for values between 2.5, 4 to 5 and reaction times with mineral exposure of 1, 2, 3 and 4 hours. Working temperatures are 25 °C, 60 °C and 80 °C for a constant stirring speed of 400 rpm. In the other mechanism, a precipitating agent such as NaF in alkaline medium is added, without modifying the pH of leached liquors, generating an insoluble compound such as NaUF6. For this purpose we worked with different: concentrations of the precipitating agent, stirring speed and precipitation times. However, the first mechanism proved to be the best. Uranium recovery values were found for working conditions of pH: 2.5; temperature of 60 ºC and reaction times higher than 3 h until 4h.
DOI: 10.6084/m9.figshare.20076464.v1
title: Comprehensive heart rate variability estimation in relation to sleep state architecture: a retrospective observational cohort study on Apple Watch heart rate data

description: This dataset accompanies the manuscript " <em>Comprehensive HRV estimation pipeline in Python using Neurokit2" </em>under review in MethodsX. The presented method is an adaptation of NeuroKit2 to simplify and automate the computation of the various mathematical estimates of heart rate variability (HRV) or similar time series. <br> The dataset contains the Jupyter notebook and computed datasets resulting from the application of the method to an Apple Watch polysomnography dataset published elsewhere (see references). The methods are described for computation of 124 HRV measures including measures with a dynamic, time-series-specific optimal time delay-based complexity estimation with a user-definable time window length. <br> As part of the test application of the methodology, I present an approach to studying the dynamic relationships between sleep state architecture and multi-dimensional HRV metrics. <br> I gratefully acknowledge the excellent support from the NeuroKit team.
DOI: 10.6084/m9.figshare.16957621.v1
title: Appendix 1_E-mental health research knowledge clusters.docx

description: E-mental health research knowledge clusters
DOI: 10.6084/m9.figshare.28783733.v1
title: Data Files Related to Research on Comprehensive Control Strategy for Standalone Photovoltaic Systems:

description: **Data Files Related to Research on Comprehensive Control Strategy for Standalone Photovoltaic Systems:
DOI: 10.6084/m9.figshare.11496663.v1
title: Dataset for Space Weather Journal paper "Evaluation of total electron content predictions using three ionosphere-thermosphere models"

description: Dataset is associated with paper submitted to the Space Weather Journal. The modeling runs were performed at the CCMC through their public Request a Model Run interface at https://ccmc.gsfc.nasa.gov/requests/requests.php . Model outputs are stored at the CCMC data depository and we provide links here.
DOI: 10.6084/m9.figshare.15181209.v1
title: Análisis desperdicios generados por el servicio de transporte terrestre en el Perú.xlsx

description: In this research work researches to make an analysis of the problem of wastes generated by the land transport sector in Entire Peruvian Nation in order to know the amount of wastes that go to landfills and those that are directly exposed to the environment
DOI: 10.6084/m9.figshare.28023641.v1
title: Rusman et al Elevated temperature diminishes reciprocal selection

description: <b>Abstract</b>The geographic mosaic of coevolution predicts reciprocal selection, the first step in coevolution, to vary with changing biotic and abiotic environmental conditions. Studying how temperature affects reciprocal selection is essential to connect effects of global warming on the microevolutionary patterns of coevolution to the ecological processes underlying them. In this study, we investigated whether temperature influenced reciprocal selection between a plant (<i>Brassica rapa</i>) and its pollinating butterfly herbivore (<i>Pieris rapae</i>). In two temperature environments (ambient and hot), we measured the phenotypes of plants and butterflies, their interactions and fitness, which we used to calculate reciprocal selection. We found a variety of traits involved in reciprocal selection in the ambient environment, but none in the hot environment. We provide experimental evidence that elevated temperature weakens reciprocal selection, which will help better predict the consequences of global warming for coevolution.Data description: Excel file containing raw data of plant traits, butterfly traits, caterpillar weight and development, pupal weight, caterpillar and butterfly life history traits (averaged per plant), caterpillar feeding positions, the average butterfly traits per plant, the average plant traits per butterfly, butterfly fitness for different nectar treatments.The average butterfly traits per plant and average plant trait per butterfly were calculated based on the number of visits each plant received by each butterfly and their respective phenotypes.The R script contains generic code to exemplify how the above raw data was analyzed. Exact traits and appropiate datasets have to be incorporated by the user.
DOI: 10.17632/mt24hdxsr2
title: Time-Domain Transmission Sensor System for On-site Dielectric Permittivity Measurements in Soil: A Compact, Low-cost and Stand-alone Solution

description: Dielectric-based measurement techniques have been shown to be very effective in determining the properties of various materials. These techniques have been widely used in a variety of fields and applications. Time Domain Transmission (TDT) techniques have grown in popularity because they are practical, non-destructive, provide measurements in real time and produce accurate measurements that are independent of multiple reflections. TDT techniques, on the other hand, are mostly performed with specialized, bulky laboratory equipment, such as a Vector Network Analyzer (VNA) which makes TDT measurements prohibitively costly and unpractical. In fact, few works in the literature have reported portable on-site TDT systems. The aim of this paper is to design and implement a dedicated, compact, and low-cost microwave Time Domain Transmission (TDT) sensor for measuring superficial soil dielectric properties on-site. Our sensor uses a time-delay measurement technique over a microstrip transmission line to estimate the dielectric properties of the soil under test. Measurement results show that the computed mean absolute error (MAE) is less than 1.2 when compared to a calibrated dielectric assessment kit (DAK) with soils containing less than 20 % of water (εr&lt;5.0), implying that our TDT sensor system can obtain on-site measurements in relatively dry soils with acceptable accuracy.
DOI: 10.17632/nxj6wzz2h3
title: Moving Bed Bio Reactor

description: Configuration and characteristics of MBBRs, operation of MBBRs
DOI: 10.17632/jy92ch3c9t
title: Data from: Bitomský et al. Plant functional groups and phylogenetic regularity control plant community bioelement composition through calcium and magnesium

description: Data from: Bitomský et al. (2022). Plant functional groups and phylogenetic regularity control plant community bioelement composition through calcium and magnesium. Oikos. doi: 10.1111/oik.09546

The dataset includes four files:
1. Community_matrix.txt = site x species community matrix (tab separated).

2. Phylogenetic_tree.txt = phylogenetic tree in a newick format. For detailed information on phylogeny inference please see Bitomský et al. (2021, Mycorrhiza, doi: 10.1007/s00572-021-01047-0). The tree used in this study was pruned from the tree in Bitomský et al. (2021).

3. Plot_data.txt = data on all community aspects, phylogenetic diversity, plant community bioelement composition (PCBC) and soil nutrient availability (tab separated).

4. Species_data.txt = species occurrences in plots with linked tissue bioelement concentrations and soil nutrient concentrations (tab separated). This format is suitable for fitting phylogenetic generalised linear mixed models (PGLMM).

See the Supplementary section of the paper (Tables S1-S2) for detailed information on soil and climate in the experimental sites.
DOI: 10.17632/tmbpczws36
title: Data for: Do Financial Incentives Crowd Out Intrinsic Motivation to Perform on Standardized Tests?

description: Data (DFICOIM.dta) and code (Do financial incentives crowd out intrinsic motivation.do) for "Do Financial Incentives Crowd Out Intrinsic Motivation to Perform on Standardized Tests?" by List, Livingston, and Neckermann. In Stata format. Variable descriptions are provided in the do file.