cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5042225
title: Figure 5 of 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases'

description: <strong>Raw data for Figure 5 from manuscript 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases', Dieter Waschbüsch, Kerryn Berndsen, Pawel Lis, Axel Knebel, Yuko P. Y. Lam, Dario R. Alessi, Amir R. Khan</strong> <strong>Figure 5BE Malachite.xlsx:</strong> Numerical data for the charts shown in Fig.5B and Fig.5E. <strong>Figure 5C.tif:</strong><br> Coomassie stained gel of recombinant PPM1H WT and mutant proteins shown in Fig.5C <strong>Figure 5D 700.png:</strong><br> Top to bottom:<br> 1) Total LRRK2 blot shown in Fig.5D<br> 2) HA blot for PPM phosphatases (PPM constructs) shown in Fig.5D<br> 3) GAPDH loading control for blots in Fig.5D<br> 4) HA blot for Rab10 shown in Fig.5D <strong>Figure 5D 800.png:</strong> 1) Phospho-Rab10 pThr73 blot shown in Fig.5D <strong>Figure 5E.tif:</strong><br> Coomassie stained gel of recombinant PPM1H WT and mutant proteins shown in Fig.5E <strong>Figure 5F 700 Rab8A.png:</strong><br> Top to bottom (Rab8A) 1) Total LRRK2 blot shown in Fig.5F<br> 2) HA blot for PPM phosphatases (PPM constructs) shown in Fig.5F<br> 3) GAPDH loading control for blots in Fig.5F<br> 4) HA blot for Rab8A shown in Fig.5F <strong>Figure 5F 800 Rab8A.png:</strong> 1) Phospho-Rab8A pThr72 blot shown in Fig.5F <strong>Figure 5F 700 Rab10.png:</strong> Top to bottom (Rab10)<br> 1) Total LRRK2 blot shown in Fig.5F<br> 2) HA blot for PPM phosphatases (PPM constructs) shown in Fig.5F<br> 3) GAPDH loading control for blots in Fig.5F<br> 4) HA blot for Rab10 shown in Fig.5F <strong>Figure 5F 800 Rab10.png:</strong> 1) Phospho-Rab10 pThr73 blot shown in Fig.5F
DOI: 10.5281/zenodo.5042224
title: Figure 5 of 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases'

description: <strong>Raw data for Figure 5 from manuscript 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases', Dieter Waschbüsch, Kerryn Berndsen, Pawel Lis, Axel Knebel, Yuko P. Y. Lam, Dario R. Alessi, Amir R. Khan</strong> <strong>Figure 5BE Malachite.xlsx:</strong> Numerical data for the charts shown in Fig.5B and Fig.5E. <strong>Figure 5C.tif:</strong><br> Coomassie stained gel of recombinant PPM1H WT and mutant proteins shown in Fig.5C <strong>Figure 5D 700.png:</strong><br> Top to bottom:<br> 1) Total LRRK2 blot shown in Fig.5D<br> 2) HA blot for PPM phosphatases (PPM constructs) shown in Fig.5D<br> 3) GAPDH loading control for blots in Fig.5D<br> 4) HA blot for Rab10 shown in Fig.5D <strong>Figure 5D 800.png:</strong> 1) Phospho-Rab10 pThr73 blot shown in Fig.5D <strong>Figure 5E.tif:</strong><br> Coomassie stained gel of recombinant PPM1H WT and mutant proteins shown in Fig.5E <strong>Figure 5F 700 Rab8A.png:</strong><br> Top to bottom (Rab8A) 1) Total LRRK2 blot shown in Fig.5F<br> 2) HA blot for PPM phosphatases (PPM constructs) shown in Fig.5F<br> 3) GAPDH loading control for blots in Fig.5F<br> 4) HA blot for Rab8A shown in Fig.5F <strong>Figure 5F 800 Rab8A.png:</strong> 1) Phospho-Rab8A pThr72 blot shown in Fig.5F <strong>Figure 5F 700 Rab10.png:</strong> Top to bottom (Rab10)<br> 1) Total LRRK2 blot shown in Fig.5F<br> 2) HA blot for PPM phosphatases (PPM constructs) shown in Fig.5F<br> 3) GAPDH loading control for blots in Fig.5F<br> 4) HA blot for Rab10 shown in Fig.5F <strong>Figure 5F 800 Rab10.png:</strong> 1) Phospho-Rab10 pThr73 blot shown in Fig.5F
DOI: 10.5281/zenodo.5042194
title: Figure 3 of 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases'

description: <strong>Raw data for Figure 3 from manuscript 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases', Dieter Waschbüsch, Kerryn Berndsen, Pawel Lis, Axel Knebel, Yuko P. Y. Lam, Dario R. Alessi, Amir R. Khan</strong> <strong>Figure 3B-WT.afe7</strong> Astra data file with data shown in Fig.3B (left) <strong>Figure 3B-2Glu.afe7</strong> Astra data file with data shown in Fig.3B (right) <strong>Figure 3C gel.tif:</strong><br> Coomassie stained gel of recombinant PPM1H WT and mutant proteins shown in Fig.3C <strong>Figure 3D Malachite.xlsx:</strong> Numerical data for the charts shown in Fig.3D
DOI: 10.5281/zenodo.5042193
title: Figure 3 of 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases'

description: <strong>Raw data for Figure 3 from manuscript 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases', Dieter Waschbüsch, Kerryn Berndsen, Pawel Lis, Axel Knebel, Yuko P. Y. Lam, Dario R. Alessi, Amir R. Khan</strong> <strong>Figure 3B-WT.afe7</strong> Astra data file with data shown in Fig.3B (left) <strong>Figure 3B-2Glu.afe7</strong> Astra data file with data shown in Fig.3B (right) <strong>Figure 3C gel.tif:</strong><br> Coomassie stained gel of recombinant PPM1H WT and mutant proteins shown in Fig.3C <strong>Figure 3D Malachite.xlsx:</strong> Numerical data for the charts shown in Fig.3D
DOI: 10.5281/zenodo.5042183
title: Figure EV2 of 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases'

description: <strong>Raw data for Figure EV2 from manuscript 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases', Dieter Waschbüsch, Kerryn Berndsen, Pawel Lis, Axel Knebel, Yuko P. Y. Lam, Dario R. Alessi, Amir R. Khan</strong><br> <strong>Figure EV2C Malachite.xlsx:</strong> Numerical data for the chart shown in Fig.EV2C
DOI: 10.5281/zenodo.5042182
title: Figure EV2 of 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases'

description: <strong>Raw data for Figure EV2 from manuscript 'Structural basis for the specificity of PPM1H phosphatase for Rab GTPases', Dieter Waschbüsch, Kerryn Berndsen, Pawel Lis, Axel Knebel, Yuko P. Y. Lam, Dario R. Alessi, Amir R. Khan</strong><br> <strong>Figure EV2C Malachite.xlsx:</strong> Numerical data for the chart shown in Fig.EV2C
DOI: 10.6084/m9.figshare.14884806
title: Self-assessment of key academic language and university skills

description: These can do statements promote students to self assess their key academic language and study skills prior to enrolment. At a timely point in the academic year, these can be reviewed to check progression and understanding
DOI: 10.6073/pasta/186be99c9dbc271394449aca814811ab
title: Seedlings and Saplings in the Clearcut Site at Harvard Forest 2010-2013

description: The aim of this dataset is to quantify the changes over time in woody seedling and sapling abundances and sizes at a site that was clearcut in the fall of 2008, followed by natural regeneration. It evidences successional changes in recruitment, survival, and associated self-thinning, and can be used to quantify accumulation of aboveground live biomass post-clearing with corresponding allometric relationships.
DOI: 10.5282/ubm/data.243
title: Onlineappendix "Mitleids- und Hilfsmüdigkeit bei humanitären Krisen: Zum Effekt übermäßigen Medienkonsums"
DOI: 10.6084/m9.figshare.14884755
title: Semi-Quantitative Analysis of Major Elements and Minerals: Clues from a Late Pleistocene Core from Campos Basin.xlsx

description: Investigation of 20 samples from a marine sediment core, which was retrieved from the continental slope of the Campos Basin, Brazil. This database contains the elementary ratios (lnTi/Ca and lnFe/Ca) and the semi quantitative mineralogy of the analyzed samples.
DOI: 10.6084/m9.figshare.14884755.v1
title: Semi-Quantitative Analysis of Major Elements and Minerals: Clues from a Late Pleistocene Core from Campos Basin.xlsx

description: Investigation of 20 samples from a marine sediment core, which was retrieved from the continental slope of the Campos Basin, Brazil. This database contains the elementary ratios (lnTi/Ca and lnFe/Ca) and the semi quantitative mineralogy of the analyzed samples.
DOI: 10.6084/m9.figshare.14884856.v1
title: Short-lived alkaline magmatism related to Réunion plume in the Deccan large igneous province: inferences from petrology, <sup>40</sup>Ar/<sup>39</sup>Ar geochronology and paleomagnetism of lamprophyre from the Sarnu-Dandali alkaline igneous complex

description: Supplementary Table 1: Ar-Ar analytical data.
DOI: 10.6084/m9.figshare.14884856
title: Short-lived alkaline magmatism related to Réunion plume in the Deccan large igneous province: inferences from petrology, <sup>40</sup>Ar/<sup>39</sup>Ar geochronology and paleomagnetism of lamprophyre from the Sarnu-Dandali alkaline igneous complex

description: Supplementary Table 1: Ar-Ar analytical data.
DOI: 10.6084/m9.figshare.14884743
title: Wavelengths of LEDs for SARS-CoV-2 study

description: Confirmation of emitted radiation peak wavelength for UVC LEDs used in the SARS-CoV-2 study<br>
DOI: 10.6084/m9.figshare.14884743.v1
title: Wavelengths of LEDs for SARS-CoV-2 study

description: Confirmation of emitted radiation peak wavelength for UVC LEDs used in the SARS-CoV-2 study<br>
DOI: 10.6084/m9.figshare.14785131.v1
title: Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms

description: Supplementary Material for ‘Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms’ as published in <i>Microbial Genomics</i>.<br>
DOI: 10.6084/m9.figshare.14785131
title: Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms

description: Supplementary Material for ‘Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms’ as published in <i>Microbial Genomics</i>.<br>
DOI: 10.5281/zenodo.4646758
title: Effects of manipulative fire regimes and mechanical bush clearing on antelope space use

description: Game reserves are conducting major habitat manipulations with increasing frequency in an effort to reduce fuel loads and therefore the risk of high-severity wildfires. These modifications of the savanna ecosystem have significant effects on food supplies and foraging sites. A combination of bush clearing and fire, in three habitat types, was used at Lapalala Wilderness to create optimal conditions for desirable plant growth, thereby directing animal movement. This study used a pellet count method, as a measure of animal visitation, to quantify the effects these habitat changes had on ungulate space use. We found that resource selection by ungulates post-burn was not uniform and bush clearing had an overall negative effect on the presence of ungulate species. Our results provide insight on the short-term effects fire and bush clearing may have on ungulate space use. We suggest the ecological outcomes of management approaches should be well understood and the implementation of manipulative practices that change ungulate feeding patterns should be appropriately conducted in order to achieve the desired goals.
description: Fulfilment of honours degree
DOI: 10.5281/zenodo.4646757
title: Effects of manipulative fire regimes and mechanical bush clearing on antelope space use

description: Game reserves are conducting major habitat manipulations with increasing frequency in an effort to reduce fuel loads and therefore the risk of high-severity wildfires. These modifications of the savanna ecosystem have significant effects on food supplies and foraging sites. A combination of bush clearing and fire, in three habitat types, was used at Lapalala Wilderness to create optimal conditions for desirable plant growth, thereby directing animal movement. This study used a pellet count method, as a measure of animal visitation, to quantify the effects these habitat changes had on ungulate space use. We found that resource selection by ungulates post-burn was not uniform and bush clearing had an overall negative effect on the presence of ungulate species. Our results provide insight on the short-term effects fire and bush clearing may have on ungulate space use. We suggest the ecological outcomes of management approaches should be well understood and the implementation of manipulative practices that change ungulate feeding patterns should be appropriately conducted in order to achieve the desired goals.
description: Fulfilment of honours degree
DOI: 10.15468/e882cv
title: Callogobius liolepis Bleeker, a senior synonym of Gobiopsis aporia Lachner and McKinney (Teleostei: Gobiidae: Gobiopsis)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Delventhal, Naomi R., Mooi, Randall D. (2014): Callogobius liolepis Bleeker, a senior synonym of Gobiopsis aporia Lachner and McKinney (Teleostei: Gobiidae: Gobiopsis). Zootaxa 3764 (5): 571-580, DOI: http://dx.doi.org/10.11646/zootaxa.3764.5.5
DOI: 10.25345/c5bk0g
title: MassIVE MSV000087720 - BeerMetabolomics_StarchSources(WheatCornRice)
title: Metabolomics study on the influence of grain adjunct metabolites on the metabolic profile of the final beer product
DOI: 10.15468/zbxdbc
title: Taxonomy of the Panorpaguttata group (Mecoptera: Panorpidae), withdescriptions of fourteen new species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Ji-Shen, Gong, You-Jing (2021): Taxonomy of the Panorpaguttata group (Mecoptera: Panorpidae), withdescriptions of fourteen new species from China. Zootaxa 4981 (2): 241-274, DOI: https://doi.org/10.11646/zootaxa.4981.2.3
DOI: 10.15468/xx36sw
title: The Black-tailed Antechinus, Antechinus arktos sp. nov.: a new species of carnivorous marsupial from montane regions of the Tweed Volcano caldera, eastern Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Dyck, Steve Van (2014): The Black-tailed Antechinus, Antechinus arktos sp. nov.: a new species of carnivorous marsupial from montane regions of the Tweed Volcano caldera, eastern Australia. Zootaxa 3765 (2): 101-133, DOI: http://dx.doi.org/10.11646/zootaxa.3765.2.1
DOI: 10.34740/kaggle/dsv/2382897
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.14884818
title: Supplementary.zip

description: This zipped file contains 5 parts after extraction:1- supplementary_1.txt (AFLP codes)2- supplementary_2.xlsx (biometric dataset)3- supplementary_3.docx (delta K graph)4- supplementary_4.txt (web address for "adegenet" R package code and script for AFLP data set)5- supplementary_4.zip (3 files for "adegenet" R package code and script for AFLP data set)6- supplementary_5.docx (AFLP capillary peak samples)Hybridization with non-native related taxa, especially with introgression, could be a major conservation problem, as it might disturb local adaptations, resulting in population reduction and biodiversity loss. It is important to identify hybrid individuals, which can be difficult to break up morphologically. Using morphometric and genetic approach (multivariate analysis, microsatellite and AFLP) , this research attempts to classify interaction and the prevalence of introgressive hybridization in four native pheasant subspecies of <i>Phasianus colchicus</i> with non-native <i>P. c. torquatus</i>. According to PCA and CDF results, hybrid individuals are placed between these two major groups of native and exotic birds. Also, we assessed the population structure, genetic variation, and gene flow between native subspecies and exotic pheasant using 16 microsatellite loci in 129 samples. Our findings revealed that hybridization occurred between two native subspecies, <i>P. c. talischensis and P. c. persicus</i>, and exotic subspecies <i>(P. c. torquatus)</i>. The <i>persicus</i> hybrid observation was almost 3 times higher than <i>talischensis</i>. The levels of the genetic variation within and among the natural populations were investigated using the amplified fragment length polymorphism (AFLP) markers method to identify hybrids. A total of 202 distinct bands were amplified using four primer combinations, with 179 of them being polymorphic. AMOVA analysis revealed a low degree of genetic differentiation among the populations. The hybrid samples were closely related to the <i>P. c. talischensis</i> and <i>P. c. persicus</i> populations, according to the UPGMA cluster and discriminant analysis of principal componenets (DAPC). It appears that disruption of gene flow between pheasant populations in the Hyrcanian zone is a serious issue. The data from molecular markers prompted us to raise a concern about the genetic integrity in some native subspecies in the Iranian plateau. As a result, a clear cut-level can now be used to differentiate the hybrids, which is also supported by morphological evidence. A direct relationship was found between farmed pheasant and hybrid growth. Farmed individuals should be closely monitored, and non-native taxa should not be released into the wild.
DOI: 10.6084/m9.figshare.14731155
title: A Decade of Drinking: Temporal Trends in Apparent Household Beer Intake and Standard Drink Consumption in the United States

description: Beer remains the greatest source of per capita alcohol consumption in the United States, and increasing market availability and consumer demand for higher alcohol has meaningful public health consequences. <i>Objectives:</i> To determine whether apparent alcohol intake from beer changed among households over time, we used nationally-representative US Nielsen Consumer Panel purchasing data from 2004 to 2014, and incorporated information on percent alcohol by volume (ABV) to compute the number of standard drinks of alcohol consumed from beer as a result. <i>Methods:</i> We queried external data sources (e.g. official manufacture, consumer beer-related websites) to obtain beer-specific ABVs, merged this information with Nielsen consumer-level data, and calculated the average rate of beer and standard drink consumption per household per year. We used joinpoint regression to estimate annual percentage changes and annual absolute changes in intake over time, with separate piecewise linear segments fit between years if a significant deviation in trend was detected. <i>Results:</i> Higher alcohol content beer consumption increased steadily across the decade, accounting for 9.6% of total intake in 2004 compared to 21.6% of total intake by 2014. Standard drink intake from beer declined sharply post-2011 by 3.04% annually (95% CI: −5.93, −0.06) or by 4.52 standard drinks (95% CI: −8.69, −0.35) yearly – coinciding with several beer industry transitions, market share fluctuations, and consumer preference changes for beer occurring around that time. <i>Conclusions:</i> Despite consistent increases in higher alcohol content beer intake across the decade, households do not appear to be consuming more standard drinks of alcohol from beer as a result. Supplemental data for this article is available online at https://doi.org/10.1080/10826084.2021.1928208 .
DOI: 10.6084/m9.figshare.14731155.v2
title: A Decade of Drinking: Temporal Trends in Apparent Household Beer Intake and Standard Drink Consumption in the United States

description: Beer remains the greatest source of per capita alcohol consumption in the United States, and increasing market availability and consumer demand for higher alcohol has meaningful public health consequences. <i>Objectives:</i> To determine whether apparent alcohol intake from beer changed among households over time, we used nationally-representative US Nielsen Consumer Panel purchasing data from 2004 to 2014, and incorporated information on percent alcohol by volume (ABV) to compute the number of standard drinks of alcohol consumed from beer as a result. <i>Methods:</i> We queried external data sources (e.g. official manufacture, consumer beer-related websites) to obtain beer-specific ABVs, merged this information with Nielsen consumer-level data, and calculated the average rate of beer and standard drink consumption per household per year. We used joinpoint regression to estimate annual percentage changes and annual absolute changes in intake over time, with separate piecewise linear segments fit between years if a significant deviation in trend was detected. <i>Results:</i> Higher alcohol content beer consumption increased steadily across the decade, accounting for 9.6% of total intake in 2004 compared to 21.6% of total intake by 2014. Standard drink intake from beer declined sharply post-2011 by 3.04% annually (95% CI: −5.93, −0.06) or by 4.52 standard drinks (95% CI: −8.69, −0.35) yearly – coinciding with several beer industry transitions, market share fluctuations, and consumer preference changes for beer occurring around that time. <i>Conclusions:</i> Despite consistent increases in higher alcohol content beer intake across the decade, households do not appear to be consuming more standard drinks of alcohol from beer as a result. Supplemental data for this article is available online at https://doi.org/10.1080/10826084.2021.1928208 .
DOI: 10.6084/m9.figshare.14884992
title: Supplementary Material for: Non-culprit artery myocardial infarction and complex coronary lesions in anterior ST-elevated myocardial infarction patients.

description: Medicine
DOI: 10.6084/m9.figshare.14884992.v1
title: Supplementary Material for: Non-culprit artery myocardial infarction and complex coronary lesions in anterior ST-elevated myocardial infarction patients.

description: Medicine
DOI: 10.15468/xuwyv4
title: Composition of the genus Loricella (Mollusca: Polyplacophora: Loricidae) and the description of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sirenko, Boris (2021): Composition of the genus Loricella (Mollusca: Polyplacophora: Loricidae) and the description of two new species. Zootaxa 4981 (2): 275-300, DOI: https://doi.org/10.11646/zootaxa.4981.2.4
DOI: 10.5281/zenodo.5044229
title: Hydrogen molecule ion benchmarks computed with the Riccati-Padé method

description: Benchmark values of the electronic energy, separation constant and internuclear distances for the hydrogen molecule cation computed with the Riccati-Padé method.
DOI: 10.6084/m9.figshare.14879514
title: Wiggle and Count Data Files

description: Wig files and count Data files from the Tnseq datsets in the paper "Model-based identification of conditionally-essential genesfrom transposon-insertion sequencing data Vishal Sarsani, Berent Aldikacti, Shai He, Rilee Zienert, Peter Chien, PatrickFlaherty"
DOI: 10.6084/m9.figshare.14879514.v3
title: Wiggle and Count Data Files

description: Wig files and count Data files from the Tnseq datsets in the paper "Model-based identification of conditionally-essential genesfrom transposon-insertion sequencing data Vishal Sarsani, Berent Aldikacti, Shai He, Rilee Zienert, Peter Chien, PatrickFlaherty"
DOI: 10.6084/m9.figshare.14879514.v2
title: Count Data TSV Files

description: Count Data files from the Tnseq datsets in the paper "Model-based identification of conditionally-essential genesfrom transposon-insertion sequencing data Vishal Sarsani, Berent Aldikacti, Shai He, Rilee Zienert, Peter Chien, PatrickFlaherty"
DOI: 10.5281/zenodo.5036902
title: Light quantity controls locomotion in photosymbiotic Aiptasia

description: Many cnidarians engage in endosymbiotic relationships with photosynthetic microalgae in the family Symbiodiniaceae. This symbiosis is deeply integrated into the physiology of the host. Although positive phototaxis and phototropism have been reported for symbiotic cnidarians, it is currently unknown whether light quantity influences phototactic behavior. Here we tested behavior of aposymbiotic (without Symbiodiniaceae) and symbiotic (with Symbiodiniaceae) Aiptasia in a light gradient to assess presence and effect of phototactic behavior.