cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p8a7ry
title: Occurrence Download

description: A dataset containing 1007244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((116.27 20.07,122.65 20.07,122.65 26.76,116.27 26.76,116.27 20.07))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1007244 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006110-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y47yk
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis solitarius Ruthven, 1916"
 ]
}

 The dataset includes 92 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044867-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s833fz
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table T1) Calcareous nannofossil stratigraphy in ODP Hole 186-1150A sediments"
 ]
}

 The dataset includes 281 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104813-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tlnxlq
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Anas aucklandica (G.R.Gray, 1844)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 79 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042519-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebg7kg
title: Occurrence Download

description: A dataset containing 36105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luzula spicata (L.) DC.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36105 records from 350 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001672-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhmfz1
title: Occurrence Download

description: A dataset containing 5236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selasphorus scintilla (Gould, 1851)"
 ]
}

 The dataset includes 5236 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042520-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ma4s58
title: Occurrence Download

description: A dataset containing 105041 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus faginea Lam."
 ]
}

 The dataset includes 105041 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157676-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwswfk
title: Occurrence Download

description: A dataset containing 3536 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Muhlenbergia asperifolia (Nees & Meyen ex Trin.) Parodi",
 "Year 1000-2017"
 ]
}

 The dataset includes 3536 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084011-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15579583
title: Quantitative climate reconstruction from sedimentary ancient DNA: framework, validation and application

description: Quantitative reconstructions of terrestrial climate conditions typically rely on biological proxies such as pollen. Despite their widespread use, these proxies exhibit inherent limitations such as low taxonomic resolution and complex taphonomies. Sedimentary ancient DNA (sedaDNA), particularly plant metabarcoding using chloroplast markers (trnL-gh), has emerged as a promising alternative offering enhanced taxonomic precision and local origin. Here, we present the framework for quantitative reconstruction of summer temperatures from sedaDNA assemblages applying methods that rely on surface samples for calibration (weighted-averaging partial least squares (WAPLS), modern analog technique (MAT)) and introducing a framework that combines modern plant occurrences and species distribution modeling (SDM) to derive taxon-specific probability density functions (PDFs) for calibration. Applying these approaches to sedaDNA data from 203 lake sediment-surface samples across Siberia, we obtained highly accurate reconstructions with median biases as low as 0.5°C and a strong correlation with observed temperatures. Our method shows a low reconstruction bias when compared to those from other proxy calibration studies. Applied to a Lake Bilyakh sediment core in eastern Siberia, our sedaDNA-based reconstructions using various approaches show similar trends and successfully reproduce regional climate changes over the past 32,000 years, aligning closely with independent pollen-based records. We also reveal that higher taxonomic resolution results in a more precise reconstruction due to narrower tolerance ranges with higher taxonomic resolution. The demonstrated reliability, low bias, and superior taxonomic resolution underscore the significant potential of sedaDNA as a robust and sensitive new terrestrial proxy for quantitative paleoclimatic research.

 

This is supplementary material to Herzschuh et al., (2025): "Quantitative climate reconstruction from sedimentary ancient DNA: framework, validation and application".

R-code is provided to perform sedaDNA-based reconstruction of mean summer temperatures for a fossil sedaDNA metabarcoding dataset (Lake Billyakh (126.74°E, 65.27°N, Siberia) and 203 metabarcoding DNA surface samples across Siberia. The novel reconstruction framework consists of:

(1) plantDNA_PDF/SDM: indicator-species approach with modelled modern occurrences

(2) plantDNA_PDF/GBIF: indicator-species approach with modern occurrences from the Global Biodiversity Information Facility (GBIF; GBIF.org, 2025)

(3) plantDNA_WAPLS: Weighted-Averaging Partial Least Squares regression approach (WA-PLS)

(4) plantDNA_MAT: Modern Analog Technique approach (MAT)

 

The supplementary table "supplement_table_taxa_asv_species_assignment.csv" provides a list with taxa designation and their assigned Amplicon Sequence Variants (ASV) and species names.
DOI: 10.5281/zenodo.17312185
title: Quantitative climate reconstruction from sedimentary ancient DNA: framework, validation and application

description: Quantitative reconstructions of terrestrial climate conditions typically rely on biological proxies such as pollen. Despite their widespread use, these proxies exhibit inherent limitations such as low taxonomic resolution and complex taphonomies. Sedimentary ancient DNA (sedaDNA), particularly plant metabarcoding using chloroplast markers (trnL-gh), has emerged as a promising alternative offering enhanced taxonomic precision and local origin. Here, we present the framework for quantitative reconstruction of summer temperatures from sedaDNA assemblages applying methods that rely on surface samples for calibration (weighted-averaging partial least squares (WAPLS), modern analog technique (MAT)) and introducing a framework that combines modern plant occurrences and species distribution modeling (SDM) to derive taxon-specific probability density functions (PDFs) for calibration. Applying these approaches to sedaDNA data from 203 lake sediment-surface samples across Siberia, we obtained highly accurate reconstructions with median biases as low as 0.5°C and a strong correlation with observed temperatures. Our method shows a low reconstruction bias when compared to those from other proxy calibration studies. Applied to a Lake Bilyakh sediment core in eastern Siberia, our sedaDNA-based reconstructions using various approaches show similar trends and successfully reproduce regional climate changes over the past 32,000 years, aligning closely with independent pollen-based records. We also reveal that higher taxonomic resolution results in a more precise reconstruction due to narrower tolerance ranges with higher taxonomic resolution. The demonstrated reliability, low bias, and superior taxonomic resolution underscore the significant potential of sedaDNA as a robust and sensitive new terrestrial proxy for quantitative paleoclimatic research.

 

This is supplementary material to Herzschuh et al., (2025): "Quantitative climate reconstruction from sedimentary ancient DNA: framework, validation and application".

R-code is provided to perform sedaDNA-based reconstruction of mean summer temperatures for a fossil sedaDNA metabarcoding dataset (Lake Billyakh (126.74°E, 65.27°N, Siberia) and 203 metabarcoding DNA surface samples across Siberia. The novel reconstruction framework consists of:

(1) plantDNA_PDF/SDM: indicator-species approach with modelled modern occurrences

(2) plantDNA_PDF/GBIF: indicator-species approach with modern occurrences from the Global Biodiversity Information Facility (GBIF; GBIF.org, 2025)

(3) plantDNA_WAPLS: Weighted-Averaging Partial Least Squares regression approach (WA-PLS)

(4) plantDNA_MAT: Modern Analog Technique approach (MAT)

 

The supplementary table "supplement_table_taxa_asv_species_assignment.csv" provides a list with taxa designation and their assigned Amplicon Sequence Variants (ASV) and species names.
DOI: 10.25574/25759
title: Chandra X-ray Observatory ObsId 25759

description: Extreme segregation in a massive dissociative cluster merger at z=0.6
DOI: 10.25574/02324
title: Chandra X-ray Observatory ObsId 02324

description: GRATINGS CALIBRATION OBSERVATIONS OF PKS2155-304
DOI: 10.25574/02335
title: Chandra X-ray Observatory ObsId 02335

description: GRATINGS CALIBRATION OBSERVATIONS OF PKS2155-304
DOI: 10.25574/03166
title: Chandra X-ray Observatory ObsId 03166

description: AO3 CALIBRATION OBSERVATIONS OF PKS2155-304
DOI: 10.25574/03167
title: Chandra X-ray Observatory ObsId 03167

description: AO3 CALIBRATION OBSERVATIONS OF PKS2155-304
DOI: 10.25574/03168
title: Chandra X-ray Observatory ObsId 03168

description: AO3 CALIBRATION OBSERVATIONS OF PKS2155-304
DOI: 10.25574/03667
title: Chandra X-ray Observatory ObsId 03667

description: INVESTIGATING THE CONTAMINATION BUILD-UP ON ACIS
DOI: 10.25574/03668
title: Chandra X-ray Observatory ObsId 03668

description: INVESTIGATING THE CONTAMINATION BUILD-UP ON ACIS
DOI: 10.25574/03669
title: Chandra X-ray Observatory ObsId 03669

description: INVESTIGATING THE CONTAMINATION BUILD-UP ON ACIS
DOI: 10.25582/data.2024-04.3091509/2558270
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3091510/2558271
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3091511/2558272
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3091513/2558273
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3091514/2558274
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3091515/2558275
title: Data for EMSL Project 51287 from April 2024
DOI: 10.25582/data.2024-04.3091516/2558276
title: Data for EMSL Project 51287 from April 2024
DOI: 10.17632/74vk64r3rb.1
title: Meta-Cognitive Problem-Solving Prompts

description: Meta-Cognitive Problem-Solving-Prompts on
fifteen-puzzle problem
knights-tour problem
light-toggling-grid problem
mutilated-chessboard problem
unsolvable-sudoku problem

Using
ChatGPT 4.o
Claude 3.7 sonnet
DeepSeek v3
Gimini 2.0 Flash
Grok 3
Kimi 1.5
Qwen 2.5 Max
Mistral
DOI: 10.17632/k34dsjpgs5.1
title: LINF_120010700

description: Peroxiredoxin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/ndxsfwv39x.1
title: LINF_120011000

description: FUSC-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/54bw9mndxv.1
title: LINF_120011700

description: MINDY-3/4-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/4hj364sh6d.1
title: Graphene Oxide ARESG2, UDEL Rheology Data: SS, SAOS, Steps, LAOS

description: Graphene oxide suspension with various centrifugal treatments: 500g & 1000g; rheology data of both sets consisting of steady state, small amplitude oscillatory shear, step-up/downs and large amplitude oscillatory shear.
DOI: 10.17632/287pgndm3v.1
title: LINF_120012000

description: BBS5-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/d73mg855tw.2
title: Tissular chromatin states cartography based on double-barcoded DNA arrays capturing unloaded PA-Tn5 Transposase

description: Recent developments in spatial omics are revoluzionating our understanding of tissue structures organization and their deregulation in disease. Here, we present a strategy for capturing chromatin histone modification signatures across tissue sections by taking advantage of a double-barcoded DNA arrays design compatible with in situ protein A-Transposase Tn5 tagmentation. This approach has been validated in presence of fresh-frozen mouse brain tissues but also in decalcified formalin-fixed paraffin-embedded (FFPE) mouse paws samples, where either the histone modification H3K4 tri-methylation or H3K27-acethylation has been used as proxy for interrogating active promoter signatures. Furthermore, since combinatorial enrichment of multiple histone modifications were shown to code for various states of gene transcriptional status (active, bivalent, repressed), we have integrated several histone modifications issued from consecutive mouse embryos to reveal changes in chromatin states across the tissue. Overall, this spatial epigenomics technology combined with the use of a spatial chromatin states analytical strategy paves the way for future epigenetics studies for addressing tissue architecture complexity.
DOI: 10.17632/d73mg855tw.3
title: Tissular chromatin states cartography based on double-barcoded DNA arrays capturing unloaded PA-Tn5 Transposase

description: Recent developments in spatial omics are revoluzionating our understanding of tissue structures organization and their deregulation in disease. Here, we present a strategy for capturing chromatin histone modification signatures across tissue sections by taking advantage of a double-barcoded DNA arrays design compatible with in situ protein A-Transposase Tn5 tagmentation. This approach has been validated in presence of fresh-frozen mouse brain tissues but also in decalcified formalin-fixed paraffin-embedded (FFPE) mouse paws samples, where either the histone modification H3K4 tri-methylation or H3K27-acethylation has been used as proxy for interrogating active promoter signatures. Furthermore, since combinatorial enrichment of multiple histone modifications were shown to code for various states of gene transcriptional status (active, bivalent, repressed), we have integrated several histone modifications issued from consecutive mouse embryos to reveal changes in chromatin states across the tissue. Overall, this spatial epigenomics technology combined with the use of a spatial chromatin states analytical strategy paves the way for future epigenetics studies for addressing tissue architecture complexity.
DOI: 10.17632/d73mg855tw.4
title: Tissular chromatin states cartography based on double-barcoded DNA arrays capturing unloaded PA-Tn5 Transposase

description: Recent developments in spatial omics are revoluzionating our understanding of tissue structures organization and their deregulation in disease. Here, we present a strategy for capturing chromatin histone modification signatures across tissue sections by taking advantage of a double-barcoded DNA arrays design compatible with in situ protein A-Transposase Tn5 tagmentation. This approach has been validated in presence of fresh-frozen mouse brain tissues but also in decalcified formalin-fixed paraffin-embedded (FFPE) mouse paws samples, where either the histone modification H3K4 tri-methylation or H3K27-acethylation has been used as proxy for interrogating active promoter signatures. Furthermore, since combinatorial enrichment of multiple histone modifications were shown to code for various states of gene transcriptional status (active, bivalent, repressed), we have integrated several histone modifications issued from consecutive mouse embryos to reveal changes in chromatin states across the tissue. Overall, this spatial epigenomics technology combined with the use of a spatial chromatin states analytical strategy paves the way for future epigenetics studies for addressing tissue architecture complexity.
DOI: 10.15468/dl.ay22rk
title: Occurrence Download

description: A dataset containing 97930 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreochromis niloticus (Linnaeus, 1758)"
 ]
}

 The dataset includes 97930 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024334-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/z8s7nwh8d5.1
title: Mendeley Supplementary Figures

description: Supplementary Figures for Efficacy and Safety of Minoxidil Therapy: A Systematic Review and Meta-Analysis
Weighing the Benefits Against the Risk of Hypertrichosis
DOI: 10.15468/dl.mfvsk2
title: Occurrence Download

description: A dataset containing 332 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neovison vison (Schreber, 1777)"
 ]
}

 The dataset includes 332 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024344-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/5386w85jpb.1
title: Managed forests are a stronghold of non-native beetles in Europe

description: Data from Basile e al. 20225 'Managed forests are a stronghold of non-native beetles in Europe'.
DOI: 10.17632/5386w85jpb.2
title: Managed forests are a stronghold of non-native beetles in Europe

description: Data from Basile e al. 2025 'Managed forests are a stronghold of non-native beetles in Europe'.
DOI: 10.18150/lawybt
title: Ex vivo permeation of agomelatine from DLP 3D-printed pyramid microneedle systems containing a 3% AGM-drug resin mixture

description: Raw data from ex vivo permeation test (IVPT) of agomelatine (AGM) from microneedle systems.Microneedle system specifications:3D printing method: DLPmicroneedle shape: pyramidcoating-gel type: - (no coating) 3% AGM mix within resin (served as printing material)Drug permeation studies:The permeation of agomelatine (AGM) was evaluated using Franz Diffusion Cells (Teledyne Hanson 376 Research, USA) with full-thickness human skin as the diffusion membrane. The skin was thawed in PBS at room temperature, mounted on the diffusion cells, and conditioned for 30 min. After this time the microneedle system was placed onto the chamber opening (1 cm²) with full-thickness human skin as the diffusion membrane. The study lasted for 7 days and sodium azide 0.02% w/v was added to the acceptor fluid as an antimicrobial agent. At specific time points, 0.3 mL samples were taken and analyzed using High-Performance Liquid Chromatography (HPLC). The amount of the acceptor medium taken for the analysis was immediately replaced with the fresh portion of the fluid. Six replications were performed for each formulation. After the study, the epidermis and dermis from each skin sample were separated manually using scissors and forceps and inserted in tubes with 3 mm zirconium beads (Benchmark Scientific Inc., Sayreville, NJ, USA). Next, 1 mL of water and ethanol solution (50:50 v/v) was added to each tube, and the samples were homogenized for 9 min using a BeadBug Microtube Homogenizer (Benchmark Scientific Inc., USA). Then, the samples were centrifuged for 5 min at 10,000 rpm, and the supernatant was analyzed using HPLC to examine the amount of the drug in the tissue.Quantification of AGM:The amount of AGM permeated was analyzed using High-Performance Liquid Chromatography (HPLC) (Shimadzu Nexera-I LC-2040C, Japan) with LabSolution Lite software.Chromatographic Conditions:Column: Reversed-phase C18 (HyperClone BDS C18, 5 µm, 4.6 × 250 mm, Phenomenex, Torrance, CA, USA)Column Temperature: 30.0 ± 0.2°CMobile Phase: Acetonitrile and 0.05 M potassium dihydrogen phosphate solution (pH = 2.9, adjusted with 85% orthophosphoric acid) in a 35:65 ratioMode: IsocraticFlow Rate: 1.0 mL/minDetection Wavelength: 230 nmThe set contains data in LCD/ LCB format, created using the LabSolutions software (HPLC, Nexera LC 2040C). Data file (.lcd) contains all analysis results and acquisition information from the following files. Data in .txt format can be read without the need for LabSolutions software.
DOI: 10.17632/ft6fndnh5n.1
title: Geochronological, geometrical, and magnetic data of dykes

description: Geochronological, geometrical, and AMS results of mafic dyke. Jilei 2025
DOI: 10.17632/ft6fndnh5n.2
title: Geochronological, geometrical, and magnetic data of dykes

description: Geochronological, geometrical, and AMS results of mafic dyke. Jilei 2025
DOI: 10.17632/yr29rg7kvj.1
title: Application of nonlinear least squares fitting to parameterized shapes

description: This paper presents a contour fitting model based on a simple closed parameterisation, designed to capture complex shapes in images without the need for large volumes of training data. The proposed approach was applied and evaluated on three specific domains: seed morphological properties, diatom morphology and geometric plane curves, using metrics such as the coefficient of determination, Jaccard index and root mean square error (RMSE) to validate the accuracy of the fit. The results show that the model provides high levels of accuracy in all applications, with particular strengths in seed and diatom classification, with potential applications in agriculture and ecology for species selection and monitoring. Compared to neural network-based fitting methods, the approach presented here is shown to be a resource-efficient alternative, requiring no lengthy training and achieving significant adaptability to diverse morphologies. These findings suggest that the proposed closed parameterisation is a robust and versatile tool for contour analysis in multiple areas, with potential for extension to other scientific and technical applications.