cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.nvx0k6dx2
title: Aquatic quillworts, Isoëtes echinospora and I. lacustris under acidic stress – a review from a temperate refuge

description: Quillworts (Isoëtes) represent highly specialised flora of softwater
 lakes, i.e., freshwater ecosystems potentially sensitive to acidification.
 In this paper, we combine a review of previous studies and our new results
 to address unrecognised reproduction strategies of quillworts to overcome
 long-term environmental stresses. These strategies play an important role
 in the plant’s ability to overcome atmospheric acidification of
 freshwaters, protecting the plants until their environment can recover.
 Environmental drivers of recovery of Isoëtes echinospora and I. lacustris
 were studied in two acidified lakes in the Bohemian Forest (Central
 Europe). Both populations survived more than 50 years of severe
 acidification although they failed to recruit new sporelings. Their
 survival depended entirely on the resistance of long-living adult plants
 because the quillworts do not grow clonally. During the past two decades,
 a renewal of the I. echinospora population inhabiting Plešné Lake has been
 observed, while no such renewal of I. lacustris, dwelling in Černé Lake,
 was evident, despite similar changes in water composition occurring in
 both lakes undergoing advanced recovery from acidification. Our in vitro
 experiments revealed that the threshold acidity and toxic aluminium
 concentrations for sporeling survival and recruitment success differed
 between I. echinospora (pH ≤4.0 and ≥300 μg L-1 Al at pH 5) and I.
 lacustris (pH ≤5.0 and ≥100 μg L-1 Al at pH 5). The higher sensitivity of
 I. lacustris to both stressors likely stems from its year-long germination
 period and underlines the risk of exposure to chronic or episodic
 acidification in recovering lakes. In contrast, the shorter germination
 period of I. echinospora (2–3 months) enables its faster and deeper
 rooting, protecting this quillwort from periodic acidification during the
 next snowmelt. Our study brings novel insights into widely discussed
 environmental issues related to the long-term degradation of softwater
 lakes, which represent important hotspots of pan-European biodiversity and
 conservation efforts.
DOI: 10.5061/dryad.mkkwh714n
title: The practice and promise of temporal genomics for measuring evolutionary responses to global change

description: Understanding the evolutionary consequences of anthropogenic change is
 imperative for estimating long-term species resilience. While contemporary
 genomic data can provide us with important insights into recent
 demographicic histories, investigating past change using present genomic
 data alone has limitations. In comparison, temporal genomics studies,
 defined herein as those that incorporate time series genomic data,
 leverage museum collections and repeated field sampling to directly
 examine evolutionary change. As temporal genomics is applied to more
 systems, species, and questions, best practices can be helpful guides to
 make the most efficient use of limited resources. Here, we conduct a
 systematic literature review to synthesize the effects of temporal
 genomics methodology on our ability to detect evolutionary changes. We
 focus on studies investigating recent change within the past 200 years,
 highlighting evolutionary processes that have occurred during the past two
 centuries of accelerated anthropogenic pressure. We first identify the
 most frequently studied taxa, systems, questions, and drivers, before
 highlighting overlooked areas where further temporal genomics studies may
 be particularly enlightening. Then, we provide guidelines for future study
 and sample designs while identifying key considerations that may influence
 statistical and analytical power. Our aim is to provide recommendations to
 a broad array of researchers interested in using temporal genomics in
 their work.
description: This dataset was collected via a literature search in Web of
 Science with the following 12 keywords: temporal genomics, "temporal
 genomics," temporal genetics, "temporal genetics," hDNA,
 "historical DNA," historical DNA, aDNA, "ancient DNA,"
 ancient DNA, museum DNA, and "museum DNA". The literature search
 was conducted on February 16, 2021. We retained studies
 from 2000–2020 that investigated genetic or genomic change in wild animal
 populations using temporal samples from no earlier than 1800. To do this,
 we first filtered our literature search results with the
 <em><strong>Literature_Search_Markdown.Rmd</strong></em> script to remove duplicates, non-journal entries, and articles published before the year 2000. Studies were also removed based on research area, source title, Web of Science category, author keywords, and article title. We then conducted a title/abstract filter by hand, following the guidelines listed in <em><strong>Database_Guidelines.docx</strong></em>. Finally, when we recorded data for each paper, we also filtered out papers based on the same guidelines as used for the title/abstract paper (for the studies that were missed during the initial filtering steps).
description: There are no special programs and/or software required to open
 the data files. All data files are saved in either CSV or XLSX format and
 can be opened in many different programs (ex: Excel & Google
 Sheets).
DOI: 10.5061/dryad.0p2ngf25b
title: Multiple co-occurring bioeconomic drivers of overexploitation can accelerate rare species extinction risk

description: 1. The unsustainable harvest of species for the global wildlife trade is a
 major cause of vertebrate extinction. Through the Anthropogenic Allee
 Effect, overexploitation to extinction can occur when a species’ rarity
 drives up its market price, enabling profitable harvest of all remaining
 individuals. Even in the absence of rarity value, however, the harvest of
 other species can subsidize the overexploitation of a rare species to the
 point of extinction, a phenomenon termed opportunistic exploitation. These
 two pathways to extinction have only been considered independently, but
 many traded species experience them simultaneously. 2. In this study, we
 develop a simple model that incorporates these mechanisms simultaneously
 and demonstrate that including multiple harvest strategies with
 market-based feedbacks fundamentally alters rare species extinction risk
 and the rate at which overexploitation occurs. As a pertinent case study,
 we consider the harvest of ground pangolins (Smutsia temminckii). 3. Our
 results show that pangolin extinction was generally associated with high
 rarity value, the use of multiple harvest strategies, and the simultaneous
 harvest of a common species that has a fast life-history. Pangolin
 population depletion and short-term extinction risk were greatest when
 harvesters used a combination of pursuit and opportunistic (i.e.
 multi-species) harvest strategies. 4. Policy implications. Our results
 suggest that feedbacks between multiple financial incentives to
 overharvest can exacerbate the risk of extinction of rare species. As a
 result, continuing to address AAE and opportunistic exploitation as
 separate extinction pathways may insufficiently capture extinction risk
 for many exploited species. Criteria for assessing extinction risk or
 harvest sustainability of exploited species should incorporate multiple
 drivers of harvest pressure, with an expanded focus on including species
 with high rarity value that are exploited in multi-species harvest
 regimes.
DOI: 10.5061/dryad.sxksn0378
title: Reflectance transformation imaging files of a selection of fossil arthropods (Carboniferous from Kaiping, China)

description: Numerous arthropods (e.g. branchiopods, insects) collected during the
 first half of the 20th century by F.-F. Mathieu within the
 Pennsylvanian–Cisuralian (Moscovian–Asselian) succession of the
 Zhaogezhuang colliery (Hebei Province, China), which was romanised notably
 as Chao Ko Chwang and Chaokochuang in the literature, have been recently
 traced in the palaeontological collections of the Royal Belgian Institute
 of Natural Sciences (Brussels). This historical material from one of the
 classic localities of the Kaiping Coalfield includes a large amount of
 Blattodea wings, mainly from the Tangshan Formation and to a lesser extent
 from the Kaiping and Zhaogezhuang formations. The exceptional richness in
 insects of a particular horizon developed within the Moscovian part of the
 Tangshan Formation was already pointed out at the end of the 1920s by the
 French palaeoentomologist P. Pruvost, who provided the first account on
 the arthropods of Mathieu’s collection from the Kaiping Coalfield. This
 singular Blattodea material was later studied by D. Laurentiaux in his
 unpublished Ph.D. In order to promote the revision of Mathieu’s collection
 by specialists, we provide here a detailed scientific background and
 re-illustrate the arachnids (and formerly alleged ones: (Poliochera vel
 Curculioides) [sic] pustulatus Laurentiaux-Vieira & Laurentiaux)),
 branchiopods (Lioestheria? mathieui (Pruvost)), and insects from the
 Zhaogezhuang colliery, notably using the Reflectance Transformation
 Imaging methodology.
description: Herein data were collected as detailed in section
 <em>Material and methodology</em> of the corresponding
 manuscript.
description: RTI files to be opened downloading the corresponding software to
 open the deposited files <br>RTIVIEWER Version 1.1:
 Available at this link https://culturalheritageimaging.org/What_We_Offer/Downloads/View/index.html Use the accompanying user guide for guidance (https://culturalheritageimaging.org/What_We_Offer/Downloads/rtiviewer/RTIViewer_Guide_v1_1.pdf)
DOI: 10.5061/dryad.6hdr7sr4z
title: Data for: Post-migratory nonbreeding movements of birds: a review and case study

description: Seasonal migrations are fascinating and ecologically important, but many
 migratory species are declining as climate change and land-use change
 alter the habitats used by migrants across the annual cycle. While some
 migratory birds use a single wintering site, others undertake large-scale
 post-migratory movements during the nonbreeding season. Technological
 advances that enable tracking individual birds are uncovering more
 examples of post-migratory nonbreeding movements. Documenting these
 movements is important for conservation, which requires understanding when
 and where migrants use habitats throughout their range. Here, we reviewed
 existing literature and collected information on the post-migratory
 nonbreeding movements of 92 migratory bird species from 18 orders across
 six continents. Among these records, the most commonly reported drivers of
 movements were resource availability and climate. This strong dependence
 of post-migratory nonbreeding movements on birds’ abiotic and biotic
 environments suggests that environmental change will impact the patterns
 of these movements and potentially the fitness of species that undertake
 them. We also reviewed post-migratory nonbreeding movements in North
 American-breeding thrushes from the genus Catharus to examine the drivers
 of these movements in five closely related migratory species. We find that
 species that are less territorial are more likely to use multiple sites
 during the nonbreeding season; however, there is little evidence for
 dietary, evolutionary, or environmental differences between thrush species
 that move during winter and those that are stationary. While we believe
 our study represents the most comprehensive list of species exhibiting
 post-migratory nonbreeding movements to date, biases in sampling, a lack
 of common terminology for these movements, and the still-nascent
 availability of inexpensive, lightweight tracking devices mean that there
 are probably many more populations that undertake such movements. Future
 research into the consequences of post-migratory nonbreeding movements for
 individual fitness and ecosystem services would advance our understanding
 of their conservation importance and their evolution.
description: We searched Web of Science and
 Google Scholar on 10 February 2021 using the following search string:
 “migrat* AND (*bird* OR avian) AND (*winter* OR nonbreeding OR
 non-breeding) AND (nomad* OR “*winter* movement*” OR “multiple *winter*
 sites” OR “between*site movement*” OR "multiple non*breeding
 sites" OR itineran*) AND (geolocat* OR *capture* OR track* OR gps OR
 MOTUS OR nanotag OR transmitter OR band* OR ring*)”. This string was
 designed to limit the search to migratory birds only and include known
 terms to describe post-migratory nonbreeding movements. We did not search
 for grey literature or use snowballing techniques.
DOI: 10.5281/zenodo.18386084
title: Dataset on the spatialisation of Multilateral Environmental Agreements (MEAs) in mountain regions

description: The Dataset on the spatialisation of Multilateral Environmental Agreements (MEAs) in mountain regions v1.0.

See readme.md for further information. 

The dataset is presented as a prototype interactive web map here.
DOI: 10.5281/zenodo.18386085
title: Dataset on the spatialisation of Multilateral Environmental Agreements (MEAs) in mountain regions

description: The Dataset on the spatialisation of Multilateral Environmental Agreements (MEAs) in mountain regions v1.0.

See readme.md for further information. 

The dataset is presented as a prototype interactive web map here.
DOI: 10.5061/dryad.9w0vt4bkr
title: Data: The magnitude and pace of photosynthetic recovery after wildfire in California ecosystems

description: Wildfire modifies the short- and long-term exchange of carbon between
 terrestrial ecosystems and the atmosphere, with impacts on ecosystem
 services such as carbon uptake. Dry western United States forests
 historically experienced low-intensity, frequent fires, with patches
 across the landscape occupying different points in the fire-recovery
 trajectory. Contemporary perturbations, such as recent severe fires in
 California, could shift the historic stand-age distribution and impact the
 legacy of carbon uptake on the landscape. Here we combine flux
 measurements of gross primary production (GPP) and chronosequence analysis
 using satellite remote sensing to investigate how the last century of
 fires in California impacted the dynamics of ecosystem carbon uptake on
 the fire-affected landscape. A GPP recovery trajectory curve of more than
 five thousand fires in forest ecosystems since 1919 indicated that fire
 reduced GPP by 157.4 ± 7.3 gCm-2yr-1 (mean ± standard error,
 n=1926) in the first year after fire, with average recovery to pre-fire
 conditions after ~12 years. The largest fires in forested ecosystems
 reduced GPP by 393.8 ± 15.7 gCm-2yr-1 (n=401) and took more than two
 decades to recover. Recent increases in fire severity and recovery time
 have led to nearly 9.9 ± 3.5 MMT CO2 (3-year rolling mean) in
 cumulative forgone carbon uptake due to the legacy of all fires on the
 landscape, complicating the challenge of maintaining California's
 natural and working lands as a net carbon sink. Understanding these
 changes is paramount to weighing the costs and benefits associated with
 fuels management and ecosystem management for climate change mitigation.
DOI: 10.5061/dryad.000000075
title: Suppression force-fields and diffuse competition: Competition de-escalation is an evolutionarily stable strategy

description: Competition theory is founded on the premise that individuals benefit from
 harming their competitors, which helps them secure resources and prevent
 inhibition by neighbours. When multiple individuals compete, however,
 competition has complex indirect effects that reverberate through
 competitive neighbourhoods. The consequences of such “diffuse” competition
 are poorly understood. For example, competitive effects may dilute as they
 propagate through a neighbourhood, weakening benefits of neighbour
 suppression. Another possibility is that competitive effects may rebound
 on strong competitors, as their inhibitory effects on their neighbours
 benefit other competitors in the community. Diffuse competition is
 unintuitive in part because we lack a clear conceptual framework for
 understanding how individual interactions manifest in communities of
 multiple competitors. Here, I use mathematical and agent-based models to
 illustrate that diffuse interactions—as opposed to direct pairwise
 interactions—are likely the dominant mode of interaction among multiple
 competitors. Consequently, competitive effects may regularly rebound,
 incurring fitness costs under certain conditions, especially when kin-kin
 interactions are common. These models provide a powerful framework for
 investigating competitive ability and its evolution and produce clear
 predictions in ecologically realistic scenarios.
description: The data are based on mathematical and computational simulations,
 executed and analyzed in R.
description: Scripts can be viewed in any scripting software or text editor.
 Data files need to be opened in R.
DOI: 10.5061/dryad.8w9ghx3rf
title: Intra and interspecific diversity in a tropical plant clade alter herbivory and ecosystem resilience

description: Declines in biodiversity generated by anthropogenic stressors at both
 species and population levels can alter emergent processes instrumental to
 ecosystem function and resilience. As such, understanding the role of
 biodiversity in ecosystem function and its response to climate
 perturbation is increasingly important, especially in tropical systems
 where responses to changes in biodiversity are less predictable and more
 challenging to assess experimentally. Using large scale transplant
 experiments conducted at five neotropical sites, we documented the impacts
 of changes in intraspecific and interspecific plant richness in the genus
 Piper on insect herbivory, insect richness, and ecosystem resilience to
 perturbations in water availability. We found that reductions of both
 intraspecific and interspecific Piper diversity had dramatic and site
 specific effects on herbivory, herbivorous insect richness, and plant
 mortality. Ecosystem responses to reduced intraspecific richness were
 often similar in magnitude to responses to reduced interspecific richness.
 Increased water availability reduced herbivory by 4.2% overall, and the
 response of herbivorous insect richness and herbivory to water
 availability was altered by both intra and interspecific richness in a
 site contingent manner. Our results underscore the role of intraspecific
 and interspecific richness as foundations of ecosystem function, and the
 importance of community specific contingencies in controlling function in
 complex tropical systems.
description: # Intra and interspecific diversity in a tropical plant clade alter
 herbivory and ecosystem resilience This data set contains response of
 herbivory and herbivorous insect richness to manipulations of water
 availability, intraspecific and interspecific *Piper* diversity at five
 neotropical sites Metadata and file descriptions are located in the
 downloadable dataset. ## Description of the Data and file structure *
 Metadata_and_code_descriptions.xlsx * contains metadata for all data and
 code files * "raw" folder * contains raw data
 files to be processed by code * Files herbivory_master_file_with_mogi,
 2018_Rainfall_MetData_LS, peru_detailed_climate_data contain blank cells
 which cannot be removed due to assumptions of code. Blanks in
 herbivory_master_file_with_mogi can be interpreted as NAs. Blanks in
 2018_Rainfall_MetData_LS, peru_detailed_climate_data represent formatting
 between data tables. Further details are described in the metadata file *
 "formatted" folder * contains processed data for statistical
 analyses
DOI: 10.5061/dryad.8931zcrvr
title: Incorporating ecology into gene drive modeling

description: Gene drive technology, in which fast-spreading engineered drive alleles
 are introduced into wild populations, represents a promising new tool in
 the fight against vector-borne diseases, agricultural pests, and invasive
 species. Due to the risks involved, gene drives have so far only been
 tested in laboratory settings while their population-level behavior is
 mainly studied using mathematical and computational models. The spread of
 a gene drive is a rapid evolutionary process that occurs over timescales
 similar to many ecological processes. This can potentially generate strong
 eco-evolutionary feedback that could profoundly affect the dynamics and
 outcome of a gene drive release. We therefore argue for the importance of
 incorporating ecological features into gene drive models. We describe the
 key ecological features that could affect gene drive behavior, such as
 population structure, life-history, environmental variation, and mode of
 selection. We review previous gene drive modeling efforts and identify
 areas where further research is needed. As gene drive technology
 approaches the level of field experimentation, it is crucial to evaluate
 gene drive dynamics, potential outcomes, and risks realistically by
 including ecological processes.
DOI: 10.5061/dryad.dv41ns236
title: SSR results of 13 markers of 609 Pyricularia oryzae isolates in Vietnam

description: Dataset represents values of SSR markers, in column, of 609 Pyricularia
 oryzae isolates, in row. “NA” means the data was missed. Those isolates
 that are name coded in VNN were collected from North Vietnam; the other,
 coded VNC, was collected in Central Vietnam. 
description: PCR products was separated and sized by fluorescence measurement
 on a 16-capillary ABI Prism 3130XL device. Raw released data were analyzed
 and converted to allele size using GeneMapper v. 4.0 (Applied
 Biosystems)
description: GeneMapper v. 4.0 (Applied Biosystems)
DOI: 10.15468/dl.r94gwm
title: Occurrence Download

description: A dataset containing 10697978 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rodentia"
 ]
}

 The dataset includes 10697978 records from 6534 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002901-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/qnvm4m
title: Wright Casebook Edited; Docketed Case: 77-1897
DOI: 10.7910/dvn/buurde
title: A 2002 national Social Accounting Matrix (SAM) for Peru and sub-national matrices for the Coastal and Sierra/Selva regions

description: What is a Social Accounting Matrix (SAM)? &lt;a href="http://www.ifpri.org/sites/default/files/SAMs.pdf"&gt;(PDF 125K)&lt;/a&gt; This is a full regional SAM for the year 2002 and was developed as an input to a regional CGE model developed to analyze regional development strategies. The country was divided into three regions, Costa, Sierra, and Selva. The regional disaggregation relied on a nine sector estimate of regional production from the Peruvian Census Bureau (INEI) regional tax and expenditure date r
eported by the Peruvian Ministry of Finance and the United National Development Program. We used regional employment data to estimate sectoral production levels by region at a greater level of disaggregation than the nine sectors reported in the INEI data. The same household surveys gave us an estimate of household saving and consumption by sector and region.
description: Social Accounting Matrix (SAM)
DOI: 10.7910/dvn/w6xyy3
title: genTB_Codebook

description: Codebook for genTB Dataverse.
DOI: 10.7910/dvn/bcvtqm
title: Aportes documentales a la historia de la Facultad de Ingeniería UNER

description: Espacio que muestra una serie de documentos que grafican aspectos relevantes de la historia de la Facultad de Ingeniería de la Universidad Nacional de Entre Ríos