cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.32f5395/1
title: SNP Data Set of Senegalese Sorghum in the USDA-NPGS GRIN

description: The file contains 213,916 GBS-SNPs obtained using genotyping-by-sequencing on the Senegalese sorghum accessions in the USDA-NPGS GRIN. Single-end sequence reads obtained from Illumina sequencing HiSeq 2500 were processed with the TASSEL 5 GBS v2 pipeline and sequence tags were aligned to the sorghum reference genome, BTx623 for SNP discovery. Only SNPs with &lt; 20% missing data, minor allele frequency MAF &gt; 0.01, and biallelic SNPs are present in this data set.
DOI: 10.5061/dryad.32f5395/2
title: Faye-Supporting_Information_Data_S1

description: The file contains information about the sorghum accessions used in the present study, local name, the village, the agro-ecological region and the country of origin, and the ADMIXTURE coefficient of membership.
DOI: 10.5061/dryad.32f5395/3
title: Faye-Supporting_Information_Data_S2

description: The file contains information about the candidate genes used in the present study, gene functions, and references.
DOI: 10.5061/dryad.32f5395/4
title: Faye-Supporting_Information_Data_S3

description: The file contains the composite likelihood ratio (CLR) outliers, obtained from the SweeD program, in durra and guinea sorghum accessions.
DOI: 10.5061/dryad.32f5395/5
title: Faye-Supporting_Information_Data_S4

description: The file contains significantly associated SNPs with phenotypes (photoperiod sensitivity and panicle compactness) or environment variables.
DOI: 10.5061/dryad.37rv60b/1
title: Raw data uploaded to Dryad
DOI: 10.5061/dryad.3pm80bp/1
title: MartinezEtAl2019_CaribbeanCoralCalcification
DOI: 10.5061/dryad.3pm80bp/2
title: 1_Martinez2019_coral_survival
DOI: 10.5061/dryad.3pm80bp/3
title: 2_Martinez2019_coral_density
DOI: 10.5061/dryad.4t880qh/1
title: Data from: Harmonised projections of future forest resources in Europe

description: Forest-related policies, reporting obligations and decision analyses require relevant, comprehensive and reliable data. To better serve the new information demands, we present an extensive dataset of forest resources in European countries projected until 2040 based on harmonized definitions, assumptions and methodology. The results were mainly computed using the European Forestry Dynamics Model (EFDM). In the computation, each country prepared the input files required by the EFDM or corresponding projection models using their National Forest Inventory (NFI) data and harmonised definitions and standardised workflow. The initial years, areas analysed and technical details of the initial data and formatting the data for the EFDM analyses vary between countries depending on data availability and forestry practices applied. This dataset presents the projections of the forest growing stock volume, aboveground carbon, and fellings in the area analysed. The accompanying README file includes a further description such as the country-specific parameterisation applied for the EFDM and any possible exceptions to the use of the standard EFDM workflow.
DOI: 10.5061/dryad.5h3r278/1
title: Species on the move occurrences

description: This dataset provides information on the location of occurrences of UK species known to be outside of their distribution ranges.
DOI: 10.5061/dryad.601k960/1
title: Teaching evaluations by students at the University of Girona (2014-2016)

description: The data set contains 11 variables from which one can reproduce the results of the aforementioned paper. The variables can be read as follows:

nota: achievement, values from 0 to 10

preg1: question 1 in the questionnaire, labelled as STRUC_1, values from 1 to 5

preg2: question 2 in the questionnaire, labelled as EFFICACY_1, values from 1 to 5

preg3: question 3 in the questionnaire, labelled as AUTON_1, values from 1 to 5

preg4: question 4 in the questionnaire, labelled as STRUC_2, values from 1 to 5

preg5: question 5 in the questionnaire, labelled as EFFICACY_2, values from 1 to 5

preg6: question 6 in the questionnaire, labelled as INVOL_1, values from 1 to 5

idassig: subject identification number

year: academic year, values from 2014 to 2016

pdi: lecturer identification number

ciencia: area of knowledge 	
=1, Humanities
			=2, Social Sciences
			=3, Sciences
			=4, Life Sciences
			=5, Medical Sciences
			=6, Arquitecture / Engineering
DOI: 10.5061/dryad.62f422p/1
title: Gasparini et al dataset

description: File and column's names are self-explanatory.  Sperm number is reported in millions (10^6) and sperm velocity in micron/second. More details are reported in the MS.
DOI: 10.5061/dryad.6n70v4b/1
title: Additional data

description: Figures 1-2, Tables 1-4
DOI: 10.5061/dryad.6s57c73/1
title: call_similarity_over_time
DOI: 10.5061/dryad.6s57c73/2
title: frequency_modulation_and_similarity
DOI: 10.5061/dryad.6s57c73/3
title: frequency_modulation_over_time
DOI: 10.5061/dryad.6s57c73/4
title: within_individual_change_longest_interval
DOI: 10.5061/dryad.6s57c73/5
title: playback_experiment_data
DOI: 10.5061/dryad.6s57c73/6
title: sympatric_allopatric_pairs_correlations
DOI: 10.5061/dryad.6s57c73/7
title: Assortative flocking benefit with divergence
DOI: 10.5061/dryad.6s57c73/8
title: public information simulation code
DOI: 10.5061/dryad.7tg31p7/1
title: Dryad_metadata

description: The Dryad metadata file contains the list of the 41 3D confocal time lapse movies of developing C. elegans embryos that reveal the embryonic expression patterns of various genes in the C. elegans embryo. Each movie records the expression of a red or green fluorescent protein either driven by a promoter or fused in frame to a gene of interest. A second channel records the expression of a globally expressed fluorescent protein that is used to determine cell divisions and infer the cell lineage. The resultant expression patterns were used to assign cells analyzed by single cell RNA-sequencing to specific cell types.
DOI: 10.5061/dryad.b38k42m/1
title: Analysis script

description: This file contains the annotated analysis script. Once the appropriate working directory is set and libraries loaded, this script will reproduce the results reported in the paper.
DOI: 10.5061/dryad.b38k42m/2
title: Data for analysis

description: Contains all the data included in the meta-analysis. Column headers: Estimate.ID: unique ID for each estimate. Study.ID: unique ID associated with the source paper. Vert: vertebrate or invertebrate. Thermy: endo- or ectotherm. Phylum-species.epithet: Phylogenetic information for the species associated with the estimate. phylo: species name as it occurs in the phylogenetic tree. D.W.: domesticated or wild species. L.F.: estimate was made in lab or field conditions. Behavior: behavioral category corresponding to estimate. N: sample size at the highest hierarchical level. N.C.: alternative sample size to address whether inflated precision biased results. Heritability: h2 estimate. Zr: transformed estimate.
DOI: 10.5061/dryad.b38k42m/3
title: JournalList

description: List of articles included in analysis, including the associated study ID. Column names: Study ID: unique ID associated with each included paper. Year - Pages: bibliographic information.
DOI: 10.5061/dryad.b38k42m/4
title: Phylogenetic tree

description: Newick formatted phylogenetic tree allowing inclusion of phylogenetic structure in analysis.
DOI: 10.5061/dryad.cf78420/2
title: dryad_butterfly_trends

description: Population indices and code to reproduce analysis of butterfly trends. Sample raw data for showing phenology models used to impute missing surveys. Data and code for figures, tables, and cladogram.
DOI: 10.5061/dryad.d0bh91n/14
title: Correlated evolution between A- and H-females

description: Data used for BayesTraits analysis of correlated evolution between the expression of a blue abdominal patch in A-females and H-females of the genus Ischnura. The first column gives the species names. The and third column provide character states for A- and H-females respectively. "0" indicates the absence of the blue patch and "1" indicates the presence of the blue patch at any point in development. Missing data for H-females is represented with a hyphen (-).
DOI: 10.5061/dryad.d0bh91n/15
title: Correlated evolution between continuos expression in A-females and immature expression in H-females

description: Data used for BayesTraits analysis of correlated evolution between the continuous expression of a blue abdominal patch in A-females and the immature expression of the blue patch in H-females of the genus Ischnura. The first column gives the species names. The and third column provide character states for A- and H-females respectively. "0" indicates the absence of the blue patch and "1" indicates the presence of the blue patch throughout adult life of A-females and in the immature phase for H-females. Missing data for H-females is represented with a hyphen (-).
DOI: 10.5061/dryad.d0bh91n/16
title: Correlated evolution between immature A- and H-females

description: Data used for BayesTraits analysis of correlated evolution between the immature-only expression of a blue abdominal patch in A- and H-females of the genus Ischnura. The first column gives the species names. The and third column provide character states for A- and H-females respectively. "0" indicates the absence of the blue patch and "1" indicates the presence of the blue patch only during the immature phase. Missing data for H-females is represented with a hyphen (-).
DOI: 10.5061/dryad.f3h26j3/1
title: Electrolyte imbalances in an ED-datafile-Tazmini-032019

description: Datafile for the article as Excelfile. The varibles are described in the README file.
DOI: 10.5061/dryad.fg8kq66/1
title: community-data

description: Bird community data from 2016 and 2017 across Guanacaste
DOI: 10.5061/dryad.h234b36/3
title: anole_phylogeny

description: Phylogeny of Anolis lizards from Poe et al. 2017
DOI: 10.5061/dryad.h234b36/5
title: Full_Code
DOI: 10.5061/dryad.h234b36/6
title: dataset_Anolis

description: body size, sexual size dimorphism, region and ecological state for Anolis lizards.
DOI: 10.5061/dryad.k08pc1r/1
title: Cell measurements of cultures

description: Individual measurements of ploeotid cultures.
DOI: 10.5061/dryad.k59bc2m/1
title: Data for GAM analysis
DOI: 10.5061/dryad.k59bc2m/2
title: Codes for GAM analysis
DOI: 10.5061/dryad.kc835.7/10.7
title: pasa_m6.hc.gene_models.repr.pep.fa

description: Protein sequences of representative models of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.7/11.7
title: M6_gene_expression_matrix.xlsx

description: Expression abundance of representative gene models
DOI: 10.5061/dryad.kc835.7/12.7
title: 523_3_assembly_ALLPATHS_v4.1.fasta.repeatmasker.gff

description: GFF file of the repeat-masked genome
DOI: 10.5061/dryad.kc835.7/5.7
title: m6.hc.gene_models.chr_corrected.gff3

description: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6 (Corrected version as of 06/2018)
DOI: 10.5061/dryad.kc835.7/6.7
title: pasa_m6.hc.gene_models.cdna.fa

description: Transcript sequences (cDNA) of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.7/7.7
title: pasa_m6.hc.gene_models.cds.fa

description: Coding sequences (CDS) of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.7/8.7
title: pasa_m6.hc.gene_models.pep.fa

description: Protein sequences of high-confidence genes in S. chacoense M6
DOI: 10.5061/dryad.kc835.7/9.7
title: m6_gene_models.func_anno.txt

description: Functional annotation of working gene model set in S. chacoense M6
DOI: 10.5061/dryad.nv89424/4
title: R code for Cope's Rule in cheilostomes

description: This text file is the full R code for reading, analyzing and plotting the main text files and SI files and generating the results accompanying the publication "Cope’s Rule in a modular organism: Directional evolution without an overarching macroevolutionary trend" by Liow, Lee Hsiang and Taylor, Paul D. Note that some of the code are redundant.
DOI: 10.5061/dryad.t6t12/5
title: LC-ESIMS/MS data for fractionated comb extracts

description: LC-ESIMS/MS data for fractionated comb extracts, acquired in positive ionisation mode
DOI: 10.5061/dryad.t6t12/6
title: LC-ESIMS/MS data for fractionated comb extracts

description: LC-ESIMS/MS data for fractionated comb extracts, acquired in negative ionisation mode
DOI: 10.17632/3z3wg3hd5m.4
title: Data for: A Multi-Aspect Study of Commercial Coatings Under the Effect of Surface Roughness and Fouling

description: The files uploaded include following: 1. Rt50.xlsx is the roughness data collected using TQC hull roughness gauge 2. Notepad files which are the torque data measured by the rotating disk facility
DOI: 10.17632/54ymhrdmyj.1
title: Data for: UFL1 Modulates NLRP3 Inflammasome Activation and Protects Against Pyroptosis in LPS-stimulated Bovine Mammary Epithelial Cells

description: • LPS triggers NLRP3 inflammasome activation in BMECs • UFL1 modulates NLRP3 inflammasome activation in LPS-stimulated BMECs • UFL1 modulates the NLRP3 activation via regulation of NF-κB and ROS production • UFL1 alleviates LPS-induced pyroptosis by targeting NLRP3 inflammasome activation
DOI: 10.17632/b86mntpkyt.1
title: Data for: Differential late-Cenozoic uplift across the Dongjiu-Milin Fault Zone in the Eastern Himalayan Syntaxis revealed by low-temperature thermochronology

description: The ten AFT samples and three ZFT samples were analyzed at ChronusCamp Research, Brazil by using the laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) method presented by Donelick et al. (2005).
DOI: 10.17632/c6t4fhdvvf.1
title: Data for: Tensor network factorizations: Relationships between brain structural connectomes and traits

description: These matlab files contain about 1065 structural brain network tensor data.
DOI: 10.17632/y5bnfjrw29.1
title: Data for: One-step preparation of sepiolite/graphene oxide membrane for multifunctional oil-in-water emulsions separation

description: These data are the basis for the charts in my article.
DOI: 10.5061/dryad.1m3tj32/1
title: mtellis_voc_dryad_FE

description: Field-collected floral VOCs of individuals of forb species (plant column)
DOI: 10.5061/dryad.1m3tj32/2
title: mtellis_forb_info_dryad_FE

description: Information for each forb species, including family, date of peak flower, flower color, floral abundance, and flowering duration.
DOI: 10.5061/dryad.32f5395/6
title: Faye-Supporting_Information_File_S1

description: The file contains ADMIXTURE population structure at K = 3–7.
DOI: 10.5061/dryad.32qv88r/1
title: data for Suction feeding performance and prey escape response

description: File depicts all the data used for the analysis in the paper. included are the following variables: Larval age (DPH) prey captured (Y/N) prey escape (Y/N) head width (mm) prey length (mm) larva length (mm) prey speed (mm/s) prey escape speed (mm/s) escaping time (s, from strike initiation time) escape distance (mm) time to peak gape (s) mouth opening distance (mm) gape opening speed (mm/s) Peak gape (mm) larval speed (mm/s) Re (swimming) Re (feeding)
DOI: 10.5061/dryad.344032g/1
title: Data deposition_Dryad
DOI: 10.5061/dryad.3pm80bp/10
title: 9_Martinez2019_coral_multiplotTissue
DOI: 10.5061/dryad.3pm80bp/4
title: 3_Martinez2019_coral_extension
DOI: 10.5061/dryad.3pm80bp/5
title: 4_Martinez2019_coral_calcification
DOI: 10.5061/dryad.3pm80bp/6
title: 5_Martinez2019_coral_multiplotSkeleton
DOI: 10.5061/dryad.3pm80bp/7
title: 6_Martinez2019_coral_zoox
DOI: 10.5061/dryad.3pm80bp/8
title: 7_Martinez2019_coral_chlorophyll
DOI: 10.5061/dryad.3pm80bp/9
title: 8_Martinez2019_coral_protein
DOI: 10.5061/dryad.4k7d5n7/1
title: P.array2010

description: 2010-2011 demographic parameter coefficients for Trillium for four treatments (see metafile).
DOI: 10.5061/dryad.4k7d5n7/2
title: P.array2011

description: 2011-2012 demographic parameter coefficients for Trillium for four treatments (see metafile)
DOI: 10.5061/dryad.4k7d5n7/3
title: P.array2012

description: 2012-2013 demographic parameter coefficients for Trillium for four treatments (see metafile).
DOI: 10.5061/dryad.4k7d5n7/4
title: P.array2013

description: 2013-2014 demographic parameter coefficients for Trillium for four treatments (see metafile).
DOI: 10.5061/dryad.4k7d5n7/5
title: P.array2014

description: 2014-2015 demographic parameter coefficients for Trillium for four treatments (see metafile).
DOI: 10.5061/dryad.4k7d5n7/6
title: P.array2015

description: 2015-2016 demographic parameter coefficients for Trillium for four treatments (see metafile).
DOI: 10.5061/dryad.4k7d5n7/7
title: Metadata html file

description: This is a metadata html file that was composed using R Markdown and executes R code. The required demographic parameter estimates can be uploaded from the associated Rda files associated with this archived Dryad Digital Repository http://doi:10.5061/dryad.4k7d5n7 (Bialic-Murphy et al. 2019). This file uses parameter coefficients calculated in a separate R script (not provided in our supplement) and builds annual integral projection models from 2010-2016 for four treatments: A) deer access and garlic mustard ambient, B) deer access and garlic mustard weeded, C) deer exclusion and garlic mustard ambient, and D) deer exclusion and garlic mustard weeded (i.e., removal of both stressors). Using the component matrices of the discretized kernel matrix (K=P+F), this script generates the annual population growth rates, the cumulative growth rates from 2010 to 2016 (λc), and the time-averaged geometric mean growth rate, which captures the time-averaged population growth rate over a single transition year (λper year = sixth root of λc).
DOI: 10.5061/dryad.64f7982/1
title: GBS_batch_1_stacks.vcf.gz

description: Unfiltered VCF file output from Stacks GBS data.
DOI: 10.5061/dryad.64f7982/2
title: Rapture_batch_1_stacks.vcf

description: Unfiltered VCF file output from Stacks Rapture data.
DOI: 10.5061/dryad.64f7982/3
title: Poolseq_22pools.sync

description: Pool-seq synchronized file
DOI: 10.5061/dryad.64f7982/4
title: Whitelist_overlapped_4664_SNPs

description: Whitelist of SNPs shared among GBS, Rapture and Pool-seq data.
DOI: 10.5061/dryad.64f7982/5
title: Reference Catalog

description: De novo reference catalog of GBS - RADnome. This ref was used to mapped sequencing reads.
DOI: 10.5061/dryad.674g1f7/1
title: Litter decom, PE, Enzyme, HFA
DOI: 10.5061/dryad.6s57c73/9
title: GLMM_code
DOI: 10.5061/dryad.70v5js4/1
title: Guppy_Master

description: Data file containing variables used in the analysis
DOI: 10.5061/dryad.8jm0c3n/1
title: Species abundances in experimental units

description: The data contains the properties of the experimental units examined and the numbers of individuals for all the macrobenthic organisms found within these units upon retrieval in the end of the experiments.
DOI: 10.5061/dryad.8rq9465/1
title: Funariaceae single gene alignments

description: Aligned matrices for for the individual loci of the whole Funariaceae dataset
DOI: 10.5061/dryad.8rq9465/2
title: Physcomitrium-Entosthodon dataset

description: This archive contains nucleotide alignments, gene trees, bipartition analysis for the reduced dataset consisting only of Physcomitrium and Entosthodon.
More details in the readme file
DOI: 10.5061/dryad.8rq9465/3
title: Funariaceae gene trees collapsed bt70

description: Gene trees of the full Funariaceae dataset with nodes collapsed when support value drops below 70% bootstrap
DOI: 10.5061/dryad.8rq9465/4
title: Funariaceae gene trees collapsed bt33

description: Gene trees of the full Funariaceae dataset with nodes collapsed when support value drops below 33% bootstrap
DOI: 10.5061/dryad.8rq9465/5
title: Nuclear baits

description: Baits used for the targeted enrichment
DOI: 10.5061/dryad.bt3ng2j/1
title: UsedPoints

description: This file contains the data for the resource selection function (RSF) to determine cougar use from GPS locations. This processed version has all geographic coordinate information removed as many of these locations are on private property and cannot be given out in raw form. Variables included are Canopy, Distance.to.Canopy, Heat.Loading, Elevation, Housing.Density, Topographic.Wetness, Distance.to.Road, Distance.to.Structure and Density.Class.
DOI: 10.5061/dryad.bt3ng2j/2
title: SightPoints

description: This file contains the data for the reported cougar sightings used in the selection function (RSF) to determine if cougar sighting locations differed from cougar use. This processed version has all geographic coordinate information removed as many of these locations are on private property and cannot be given out in raw form. Variables included are Canopy, Distance.to.Canopy, Heat.Loading, Elevation, Housing.Density, Topographic.Wetness, Distance.to.Road, Distance.to.Structure and Density.Class.
DOI: 10.5061/dryad.c4q7h62/1
title: Volumes of brain regions in female guppies

description: All data was collected in the lab and analysed using R studio. A list of abbreviations for the data can be found on the second spreadsheet of the excel file.
DOI: 10.5061/dryad.cb2f70h/1
title: Data on copepods selected for resistance to host manipulation

description: This file contains data on each copepod used in this study and its behaviour (final_data) as well as raw data on the behaviour of each copepod on each day when it was meassured (behaviour_data_per_day). It additionally containes a describtion of the variable names used in this dataframes.
DOI: 10.5061/dryad.dj343ht/1
title: Daphnia pulex density long-form data for all replicates in all treatments

description: The nine experimental genotypes are denoted by their respective letter identifiers under the heading 'genotype', along with the 'Mixed' genotype treatment. The single (1 colonist) or many (9 colonists) quantity treatment is denoted under the 'quantity' heading. The 'replicate' heading identifies the individual replicates in each treatment (n=6 for single treatments, n=5 for many treatments, n=5 for the Mixed treatment). The density (individuals per L) values plotted in Figure 1 and used to calculate treatment effect sizes are given in the 'density(ind/L)' column.
DOI: 10.5061/dryad.f28s554/1
title: Data for Silent Male Cricket Reproductive Success

description: Data for: Obligately silent males sire more offspring than singers in a rapidly evolving cricket population
DOI: 10.5061/dryad.fg8kq66/2
title: edge-data

description: Edge perimeter around 150 point count locations with varying buffer sizes from 50m to 1500m.
DOI: 10.5061/dryad.fg8kq66/3
title: forestcover-data

description: Amount of tree cover around 150 point count locations with varying buffer sizes from 50m to 1500m.
DOI: 10.5061/dryad.fg8kq66/4
title: precip-data

description: Precipitation data and site coordinates for 150 point count localities.
DOI: 10.5061/dryad.k08pc1r/2
title: Raw SEM images of Ploeotids

description: Raw Scanning Electron Microscopy (SEM) images of and Olkasia polycarbonata and other cultured ploeotid taxa
DOI: 10.5061/dryad.k08pc1r/3
title: Raw treefiles of ploeotid phylogenetic analyses

description: Raw treefiles (NEWICK-format and PDF) and trimmed alignment data (fasta-format) for phylogenetic analyses of ploeotids.
DOI: 10.5061/dryad.k08pc1r/4
title: Untrimmed datasets of main phylogenetic analyses of ploeotids

description: Untrimmed alignments (fasta-format) of phylogenetic analyses of ploeotids: 1) All taxa, including Entosiphon, 2) excluding Entosiphon
DOI: 10.5061/dryad.k08pc1r/5
title: Raw LM images of ploeotids

description: Raw light microscopy (LM) images of isolated and cultured ploeotid taxa.
DOI: 10.5061/dryad.kr25r48/1
title: Landsborough et al DATA FOR DRYAD

description: Information containing the treatment, species, measures of response, and the conspecific and heterospecific factors summarizing the physical responses to playback, extracted using PCA.
DOI: 10.5061/dryad.mm5pv44/1
title: Network analysis outputs for each network included in this global research synthesis.

description: This file includes network diagrams and all default bipartite network metrics for all networks included in analyses for this publication. Metrics for non-native species are delineated in red.