cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17247222
title: Data associated with: A wealth of riches: a comprehensive revision of diamond frogs, genus Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae), with the description of seven new species

description: Supplementary files associated with the publication 'A wealth of riches: a comprehensive revision of diamond frogs, genus Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae), with the description of seven new species'. 

Contains:



Rhombophryne-Mapping.csv - MS-DOS CSV file containing coordinates used for maps in the manuscript

RhombophryneMorphometricsMasterTable.xlsx - Full morphometric and morphological dataset. Contains three sheets: Raw, with the full dataset; GapTreated, containing a reduced set of measurements, with all gaps removed; GapTreatedWithDiscreet, containing the same set as GapTreated, plus several discreet traits. The 'GapTreated' sheet was the one used for PCA and LDA in the manuscript. 

16S_p-distance_Rhombophryne_2025-10-01.xlsx - Uncorrected p-distances in 16S rRNA for Rhombophryne specimens and species. Contains six sheets:



S3_16S3_all_individuals, Supplementary Table 3

S4_16S5_all_inidivduals, Supplementary Table 4

S5_16S3_modern_individuals, Supplementary Table 5

S6_16S5_modern individuals, Supplementary Table 6

16S3_species_modern, Table 2

16S5_species_modern, Table 3



Rhombo_16S5.fas - Full 16S5' alignment in FASTA format

Rhombo_16S3.fas - Full 16S3' alignment in FASTA format

config.txt - config file for MolD analysis. 

RAG1_partition.txt - partition file used as part of input for Hapsolutely to calculate haplotype network

RAG1_Rhombophryne_HTNW.fas - Full Rag1 alignment in FASTA format used as input for Hapsolutely to calculate haplotype network

16S5_Rhombo_MolD.fas - input alignment used for MolD analysis for 16S5'

16S3_Rhombo_MolD.fas - input alignment used for MolD analysis for 16S3'

16S_Rhombophryne_concat.fas - FASTA alignment concatenated from 3' and 5' fragments. 

16S5-Rhombophryne_Taxi2_speciesgroups.csv - Input file used for Taxi2 on 16S5' for species groups

16S3-Rhombophryne_Taxi2_speciesgroups.csv- Input file used for Taxi2 on 16S3' for species groups

Rhombophryne_museomics.xlsx - Details on museomics results. Contains two sheets, one for either fragment of 16S.
DOI: 10.5281/zenodo.17253846
title: Data associated with: A wealth of riches: a comprehensive revision of diamond frogs, genus Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae), with the description of seven new species

description: Supplementary files associated with the publication 'A wealth of riches: a comprehensive revision of diamond frogs, genus Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae), with the description of seven new species'. 

Contains:



Rhombophryne-Mapping.csv - MS-DOS CSV file containing coordinates used for maps in the manuscript

RhombophryneMorphometricsMasterTable.xlsx - Full morphometric and morphological dataset. Contains three sheets: Raw, with the full dataset; GapTreated, containing a reduced set of measurements, with all gaps removed; GapTreatedWithDiscreet, containing the same set as GapTreated, plus several discreet traits. The 'GapTreated' sheet was the one used for PCA and LDA in the manuscript. 

16S_p-distance_Rhombophryne_2025-10-01.xlsx - Uncorrected p-distances in 16S rRNA for Rhombophryne specimens and species. Contains six sheets:



S3_16S3_all_individuals, Supplementary Table 3

S4_16S5_all_inidivduals, Supplementary Table 4

S5_16S3_modern_individuals, Supplementary Table 5

S6_16S5_modern individuals, Supplementary Table 6

16S3_species_modern, Table 2

16S5_species_modern, Table 3



Rhombo_16S5.fas - Full 16S5' alignment in FASTA format

Rhombo_16S3.fas - Full 16S3' alignment in FASTA format

config.txt - config file for MolD analysis. 

RAG1_partition.txt - partition file used as part of input for Hapsolutely to calculate haplotype network

RAG1_Rhombophryne_HTNW.fas - Full Rag1 alignment in FASTA format used as input for Hapsolutely to calculate haplotype network

16S5_Rhombo_MolD.fas - input alignment used for MolD analysis for 16S5'

16S3_Rhombo_MolD.fas - input alignment used for MolD analysis for 16S3'

16S_Rhombophryne_concat.fas - FASTA alignment concatenated from 3' and 5' fragments. 

16S5-Rhombophryne_Taxi2_speciesgroups.csv - Input file used for Taxi2 on 16S5' for species groups

16S3-Rhombophryne_Taxi2_speciesgroups.csv- Input file used for Taxi2 on 16S3' for species groups

Rhombophryne_museomics.xlsx - Details on museomics results. Contains two sheets, one for either fragment of 16S.
DOI: 10.6084/m9.figshare.26023162
title: The impact of sociality regimes on heterogeneous cooperative-competitive multi-agent reinforcement learning: a study with the predator-prey game

description: The performance in multi-agent reinforcement learning (MARL) scenarios has usually been analysed in homogeneous teams with a few choices for the sociality regime (selfish, egalitarian, or altruistic). In this paper we analyse both homogeneous and heterogeneous teams in a variation of sociality regimes in the predator-prey game, using a novel normalisation of the weights so that the sum of all rewards is independent of the sociality regime. We find that the selfish regime is advantageous for both predator and prey teams, and for both homogeneous and heterogeneous teams. In particular, rewards are about 100% higher for the predator team when switching from the egalitarian to selfish regime and more than 400% higher from the altruistic regime. For the prey, the increase is around 40% and 100% respectively. The results are similar for homogeneous and heterogeneous situations. The takeaway message is that any study of homogeneous and heterogeneous cooperative-competitive multi-agent reinforcement learning teams should also take into account the sociality regimes before making conclusions on the preference of any algorithm.
DOI: 10.6084/m9.figshare.26023162.v1
title: The impact of sociality regimes on heterogeneous cooperative-competitive multi-agent reinforcement learning: a study with the predator-prey game

description: The performance in multi-agent reinforcement learning (MARL) scenarios has usually been analysed in homogeneous teams with a few choices for the sociality regime (selfish, egalitarian, or altruistic). In this paper we analyse both homogeneous and heterogeneous teams in a variation of sociality regimes in the predator-prey game, using a novel normalisation of the weights so that the sum of all rewards is independent of the sociality regime. We find that the selfish regime is advantageous for both predator and prey teams, and for both homogeneous and heterogeneous teams. In particular, rewards are about 100% higher for the predator team when switching from the egalitarian to selfish regime and more than 400% higher from the altruistic regime. For the prey, the increase is around 40% and 100% respectively. The results are similar for homogeneous and heterogeneous situations. The takeaway message is that any study of homogeneous and heterogeneous cooperative-competitive multi-agent reinforcement learning teams should also take into account the sociality regimes before making conclusions on the preference of any algorithm.
DOI: 10.15468/dl.hfvyxv
title: Occurrence Download

description: A dataset containing 1101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((24.28507 37.70469,24.1914 37.58892,24.26507 37.48368,24.38926 37.4921,24.50608 37.62576,24.42294 37.7068,24.33664 37.72048,24.28507 37.70469))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042550-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25375/uct.28740956
title: Conservation in a changing world: assessing the conservation status of an agriculturally adapted species, the blue crane. Appendix 2: Farmer interviews

description: Conservation of species residing on privately-owned agricultural land requires a holistic understanding of landowner views and the agricultural system. In the Western Cape Blue Cranes <i>Anthropoides paradiseus</i> occur on intensively farmed agricultural land, and therefore the population is impacted by farmer decisions. I conducted interviews with farmers in the Overberg (n = 20) and Swartland (17) in June 2019 and June 2021, to understand climate change adaptation strategies, agricultural change and attitudes to Blue Cranes and their conservation. The main agricultural change in the last few decades has been a switch to minimum till, or conservation farming, a trend which is to increase, as it was cited by farmers as their main climate change adaptation strategy. Minimum till is one of three pillars of conservation agriculture, which are minimum soil disturbance, maintaining soil organic cover (leaving stubble on the land or cover crops) and using crop rotation. Many of these practices should benefit cranes, although increased reliance on chemicals for weed and pest control may be detrimental. Many farmers experience crop damage from rodents and geese, and the use of rodenticide to control rodents is widespread. Some farmers are aware of poison being used for geese in their area, despite it being illegal. A greater conservation presence is needed in this landscape to curb these practices, and to encourage responsible pest control. Overall, the interviewed farmers had positive attitudes towards Blue Cranes on their farms, 62% of farmers got the highest possible attitude score for these attitude statements. Despite this positive attitude, overall farmer attitudes towards Blue Crane conservation initiatives were only mildly positive, mainly because most farmers believe that Blue Cranes are doing well in the area. This information can guide future conservation approaches; it is possible that a more integrated approach, where interventions have multiple goals, could be effective. For example, assisting farmers find solutions for crop damage by geese and rodents, would be beneficial to farmers and biodiversity, including cranes.
DOI: 10.25375/uct.28740956.v1
title: Conservation in a changing world: assessing the conservation status of an agriculturally adapted species, the blue crane. Appendix 2: Farmer interviews

description: Conservation of species residing on privately-owned agricultural land requires a holistic understanding of landowner views and the agricultural system. In the Western Cape Blue Cranes <i>Anthropoides paradiseus</i> occur on intensively farmed agricultural land, and therefore the population is impacted by farmer decisions. I conducted interviews with farmers in the Overberg (n = 20) and Swartland (17) in June 2019 and June 2021, to understand climate change adaptation strategies, agricultural change and attitudes to Blue Cranes and their conservation. The main agricultural change in the last few decades has been a switch to minimum till, or conservation farming, a trend which is to increase, as it was cited by farmers as their main climate change adaptation strategy. Minimum till is one of three pillars of conservation agriculture, which are minimum soil disturbance, maintaining soil organic cover (leaving stubble on the land or cover crops) and using crop rotation. Many of these practices should benefit cranes, although increased reliance on chemicals for weed and pest control may be detrimental. Many farmers experience crop damage from rodents and geese, and the use of rodenticide to control rodents is widespread. Some farmers are aware of poison being used for geese in their area, despite it being illegal. A greater conservation presence is needed in this landscape to curb these practices, and to encourage responsible pest control. Overall, the interviewed farmers had positive attitudes towards Blue Cranes on their farms, 62% of farmers got the highest possible attitude score for these attitude statements. Despite this positive attitude, overall farmer attitudes towards Blue Crane conservation initiatives were only mildly positive, mainly because most farmers believe that Blue Cranes are doing well in the area. This information can guide future conservation approaches; it is possible that a more integrated approach, where interventions have multiple goals, could be effective. For example, assisting farmers find solutions for crop damage by geese and rodents, would be beneficial to farmers and biodiversity, including cranes.
DOI: 10.6084/m9.figshare.30017092
title: Codes, data, and supplementary videos for the paper <i>"Nomado Umino, Takaya Arita, and Reiji Suzuki: Emergence of Cooperative and Competitive Resource Networks through Evolution of Niche Construction and Ecological Inheritance"</i> in ABMHub'25

description: Code, data, and supplementary videos for the ABMHub’25 paper “Nomado Umino, Takaya Arita, and Reiji Suzuki: Emergence of Cooperative and Competitive Resource Networks through Evolution of Niche Construction and Ecological Inheritance.”This package provides Python code (Jupyter notebooks) to run the model and reproduce the paper’s figures and videos, along with the underlying simulation data.
DOI: 10.6084/m9.figshare.30017092.v1
title: Codes, data, and supplementary videos for the paper <i>"Nomado Umino, Takaya Arita, and Reiji Suzuki: Emergence of Cooperative and Competitive Resource Networks through Evolution of Niche Construction and Ecological Inheritance"</i> in ABMHub'25

description: Code, data, and supplementary videos for the ABMHub’25 paper “Nomado Umino, Takaya Arita, and Reiji Suzuki: Emergence of Cooperative and Competitive Resource Networks through Evolution of Niche Construction and Ecological Inheritance.”This package provides Python code (Jupyter notebooks) to run the model and reproduce the paper’s figures and videos, along with the underlying simulation data.
DOI: 10.15468/dl.hnv8y9
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.54201 40.82976,-3.54293 40.82248,-3.53171 40.82144,-3.53106 40.82879,-3.54201 40.82976))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 106 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042552-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30208858
title: Datasets and codes for manuscript " How do top-down and bottom-up processes influence food web stability in the river-connected lake"

description: Datasets and codes for manuscript " How do top-down and bottom-up processes influence food web stability in the river-connected lake"
DOI: 10.6084/m9.figshare.30208858.v3
title: Datasets and codes for manuscript " How do top-down and bottom-up processes influence food web stability in the river-connected lake"

description: Datasets and codes for manuscript " How do top-down and bottom-up processes influence food web stability in the river-connected lake"
DOI: 10.6084/m9.figshare.30208858.v2
title: Datasets and codes for manuscript " How do top-down and bottom-up processes influence food web stability in the river-connected lake"

description: Datasets and codes for manuscript " How do top-down and bottom-up processes influence food web stability in the river-connected lake"
DOI: 10.26023/pby2-nrk5-nf0t
title: R/V Ka'imimoana Sonic Anemometer and CO2 (Picarro) Data. Version 1.0

description: This dataset contains 10Hz CO2 and Sonic Anemometer data collected during the period from 1/26/12 00:00 UTC to 2/28/12 22:00 UTC for the R/V Ka'imimoana cruise track from Hawaii to Costa Rica. These data were collected as part of the field campaign of the Tropical Ocean Troposhere Exchange of Reactive Halogen Species and Oxygenate VOC (TORERO) project. For more information, please see the Readme file.
DOI: 10.5281/zenodo.17255515
title: singular they stimuli

description: Stimuli used in a self-paced reading experiment, as reported in

Schmitz, D. (2025). The processing costs of generic and specific singular they: A self-paced reading study. Poster presented at 31. Architectures and Mechanisms for Language Processing Conference, Charles University, Prague, Czechia. 04-06 September. https://dominicschmitz.com/wp-content/uploads/2025/08/AMLaP2025_they.pdf
DOI: 10.5281/zenodo.17255516
title: singular they stimuli

description: Stimuli used in a self-paced reading experiment, as reported in

Schmitz, D. (2025). The processing costs of generic and specific singular they: A self-paced reading study. Poster presented at 31. Architectures and Mechanisms for Language Processing Conference, Charles University, Prague, Czechia. 04-06 September. https://dominicschmitz.com/wp-content/uploads/2025/08/AMLaP2025_they.pdf
DOI: 10.15468/dl.gp52fe
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Danaus plexippus",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042553-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e2dsy
title: Occurrence Download

description: A dataset containing 36378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.77134 40.48957,-3.74264 40.48957,-3.74264 40.50632,-3.77134 40.50632,-3.77134 40.48957))",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 36378 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042549-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmbs6t
title: Occurrence Download

description: A dataset containing 36378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.77134 40.48957,-3.74264 40.48957,-3.74264 40.50632,-3.77134 40.50632,-3.77134 40.48957))",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 36378 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042551-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7z4zx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.54201 40.82976,-3.54293 40.82248,-3.53171 40.82144,-3.53106 40.82879,-3.54201 40.82976))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042554-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xt75mg
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((24.43204 37.5032,24.32132 37.44182,24.30326 37.27332,24.42242 37.24443,24.61499 37.36479,24.47417 37.49718,24.43204 37.5032))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 115 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042555-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/yv28-5thf-zv0d
title: R/V Ka'imimoana CU SMAX-DOAS Imagery. Version 1.0

description: This dataset contains CU SMAX-DOAS imagery collected during the period from 1/26/12 00:00 UTC to 2/20/12 23:59 UTC for the R/V Ka'imimoana cruise track from Hawaii to Costa Rica. These data were collected as part of the field campaign of the Tropical Ocean Troposhere Exchange of Reactive Halogen Species and Oxygenate VOC (TORERO) project.
DOI: 10.15468/dl.xwnkuf
title: Occurrence Download

description: A dataset containing 3986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.68697 40.40993,-3.67869 40.40993,-3.67869 40.41534,-3.68697 40.41534,-3.68697 40.40993))",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 3986 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042557-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ce8b7v
title: Occurrence Download

description: A dataset containing 1279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((24.58973 37.27444,24.45868 37.23412,24.30344 37.14138,24.36291 37.04561,24.55344 36.97505,24.64819 37.08291,24.6996 37.18573,24.66835 37.25629,24.6361 37.30972,24.58973 37.27444))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1279 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042558-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cr2p9
title: Occurrence Download

description: A dataset containing 1794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hofmannophila pseudospretella",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1794 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042559-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq8aa9
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hofmannophila pseudospretella",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042560-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hacz4e
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hofmannophila pseudospretella",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 54 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042561-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.