cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1348221.v2
title: City of Ballard Streets Renamed

description: Ballard was a city separate from Seattle until 1907, and had its own street names. Most well known is Broadway, the old name for Market Street, but every street had a different name.<br><br>This table includes all of the street names platted in Ballard as denoted in teh 1905 Sanborn fire insurance map and 1903 sewer line map 1588 at the city of seattle. In keeping with the 1895 street rename table, the "From" column indicates the one end of the street in the old street grid, and "To" is another old street name or location that the street ended.
DOI: 10.6084/m9.figshare.4753492.v3
title: Chemical and Microbial Data - Chennai Floods Dec 2015.xls

description: Results of chemical and microbial analyses of water samples collected from wells, river and lake during December 2015 and April 2016 to assess the impact of an extreme flood event on 2nd December 2015 in Chennai, India
DOI: 10.15468/dl.pns3gn
title: Occurrence Download

description: A dataset containing 14224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Rubus chamaemorus L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 14224 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013511-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13083884.v1
title: Supplementary Material for: Changes in Cerebral Volume and White Matter Integrity in Adults on Hemodialysis and Relationship to Cognitive Function

description: <b><i>Introduction:</i></b> Patients on hemodialysis (HD) have a significant burden of cognitive impairment. Characterizing the cerebral structural changes in HD patients compared to healthy controls and evaluating the relationship of cerebral structural integrity with cognitive performance in HD patients can help clarify the pathophysiology of the cognitive impairment in HD patients. <b><i>Methods:</i></b> In this cross-sectional study, in-center HD patients ≥50 years of age underwent brain structural and diffusion MRIs and cognitive assessment using the NIH Toolbox cognition battery. The cerebral imaging measures of the HD participants were compared to imaging from age-matched controls. Gray matter volume, white matter volume, and white matter integrity determined by diffusion tensor imaging parameters (including fractional anisotropy [FA]) were measured in both cohorts to determine differences in the cerebral structure between HD participants and healthy controls. The association between cognitive performance on the NIH Toolbox cognition battery and cerebral structural integrity was evaluated using multiple linear regression models. <b><i>Results:</i></b> We compared imaging measures form 23 HD participants and 15 age-matched controls. The HD participants had decreased gray matter volumes (526.8 vs. 589.5 cm<sup>3</sup>, <i>p</i> &lt; 0.01) and worsened white matter integrity overall (FA values of 0.2864 vs. 0.3441, <i>p</i> &lt; 0.01) within major white matter tracts compared to healthy controls. Decreases in white matter integrity in the left superior longitudinal fasciculus was associated with lower executive function scores (<i>r</i><sup><i>2</i></sup> = 0.24, <i>p</i> = 0.02) and inferior longitudinal fasciculus with lower memory scores (<i>r</i> = 0.25 and <i>p</i> = 0.03 for left and <i>r</i><sup>2</sup> = 0.21 and <i>p</i> = 0.03 for right). <b><i>Conclusions:</i></b> HD patients have a pattern of decreased white matter integrity and gray matter atrophy compared to controls. Decreases in white matter integrity were associated with decreased cognitive performance in the HD population.
DOI: 10.6084/m9.figshare.28760444.v1
title: dataset_drawings.xlsx

description: This study introduces a quantitative method using Local Shannon Entropy to assess information in digital drawings. After converting images to grayscale, entropy is computed in non-overlapping blocks. This block size captures both detail and complexity. The approach enhances drawing analysis in psychology and neuroscience.
DOI: 10.6084/m9.figshare.20020542.v1
title: "PROPERTY" RIGHTS AND THE WAYS OF PROTECTING ENTITLEMENTS - AN INTERDISCIPLINARY APPROACH

description: Abstract This paper discusses the concept of "property" rights in an interdisciplinary perspective (Law and Economics) in order to compose an analytical conceptual framework to issues related to appropriability involved in public goods (PG) and common pool resources (CPR) analysis. Firstly, we discuss the differences between legal and economic concepts of property rights, trying to integrate economic and legal analytical elements: a right is an opportunity for current or future uses of an asset that is guaranteed by legal system (an enforceable power to maintain the control over economic opportunities). Although economists may not be concerned if some opportunity is guaranteed (or not) by law, nor whether its entitlement is made by means of property or by some other kind of right, these differences also matter for economic analysis. To deal with this question, we need to open the "black box" of the so called "property" rights: a) identifying and analyzing the different ways in which rights are entitled - from a legal perspective (Hohfeld) and in the footsteps of studies analyzing the economic relevance of the differences between property and possession, or property, liability and inalienability (Calabresi and Melamed); b) breaking down the concept of property rights in many faculties and analyzing them as a bundle of rights (Schlager and Ostrom). By way of conclusion, we discuss the possibilities of integrating these approaches and explore some of the implications of the study. From a public policies perspective, a more detailed understanding may assist in policy formulation (e.g., to break down and assign specific rights to different holders, etc.), and designing new forms of entitlements, or even the creation of new "assets" that could become the subject of rights.
DOI: 10.6084/m9.figshare.5554567.v1
title: Experiment HaLT-SubjectB-160218-6States

description: Experiment in which subject performed 6 imageries of left and right hand motion, left and right leg motion, tongue motion, and a passive state.
DOI: 10.6084/m9.figshare.25976908.v1
title: Supplementary Material for: Clearance of hepatitis C virus following immunecheckpoint inhibitor therapy for hepatocellular carcinoma: Case Report

description: Introduction

Patients with advanced hepatocellular carcinoma (HCC) have limited treatment options in the context of decompensated cirrhosis. HCC occurs in patients with hepatis C virus (HCV) infection and cirrhosis at 1-4% per year. Direct-acting antiviral (DAA) efficacy is decreased in the presence of HCC. We present a case where immunotherapy may have resulted in HCV clearance, when DAA therapy had been ineffective. We hypothesise that immune checkpoint inhibitors targeting the PD1/PD-L1 pathway can reverse T cell exhaustion and aid in the clearance of chronic HCV. 

Case presentation

This case study describes a male in his 40s identified by a re-engagement initiative for hepatitis C virus (HCV), who had been unaware of his diagnosis. On further investigation he was found to have compensated liver cirrhosis and hepatocellular carcinoma (HCC). He was treated with HCV direct acting antiviral (DAA) therapy (Sofosbuvir/Velpatasvir) and then systemic immunotherapy for HCC with Atezolizumab and Bevacizumab, in an attempt to downstage the disease. Hepatitis C therapy did not achieve sustained virological response, with viral relapse after the end of treatment. This, combined with ongoing alcohol use, resulted in hepatic decompensation and cessation of immunotherapy after the fifth cycle. The HCV RNA subsequently became undetectable without further DAA re-treatment.

Conclusion

To our knowledge, this is the first case of HCV clearance after DAA relapse and the timing of this event after immunotherapy suggests a causal link. We hypothesise that this may be due to the reversal of anti-viral T cell exhaustion. This would therefore support further investigation in other chronic viral infections that create tumour associated immunosuppressive microenvironments.
DOI: 10.6084/m9.figshare.28268369.v1
title: <b>Threshold response </b><b>of arbuscular mycorrhizal mycelial respiration to </b><b>a nitrogen </b><b>addition gradient in an alpine </b><b>grassland</b>

description: The raw data of all indicators under six levels of N additions treatments are given in the dataset, and the data provided can be directly used for mapping and analysis of variance.In every sheet, 0 g N m-2 year-1 (N0, control), 2 g N m-2 year-1 (N2), 4 g N m-2 year-1 (N4), 8 g N m-2 year-1 (N8), 16 g N m-2 year-1 (N16), 32 g N m-2 year-1 (N32).datasets included:Fig. 1 is a conceptual model figure and does not include any data.Fig. 2：The raw data of R<sub>AMF</sub>, R<sub>AMF</sub>/Ra and R<sub>AMF</sub>/Rs.Fig. 3：The raw data of Plant richness, Plant coverage, Aboveground biomass and Root biomass.Fig. 4：The raw data of AMF biomass, OTU richness, Shannon diversity and the relative abundance of AMF families.Fig. 5-6：The raw data of R<sub>AMF</sub>, Moisture, pH, SIN, Plant richness, Root biomass, Plant coverage, AMF biomass, Shannon diversity and Glomeraceae.Fig. S1 are the experimental design of N addition plots and does not include any data.Fig. S2： The raw data of Rs.Fig. S3：The raw data of soil temperature and moisture.Fig. S4：The raw data of R<sub>AMF</sub>, Moisture, pH, SIN, Plant richness, Root biomass, Plant coverage, AMF biomass, Shannon diversity and Glomeraceae.Table S1: The raw data of pH, TC, TN, TP, SIN, MBC and MBN.Raw data: the raw data for all indicators in the article. These raw data are used to evaluate the relationships between various variables.
DOI: 10.6084/m9.figshare.25766259.v1
title: Division Detection and Tracking Annotated Dataset

description: The following dataset contains annotation for division and tracking for live cell images acquired through automated confocal microscopy. All videos are from time-lapse microscopy with time interval of 4h, and spatial resolution of 512x512 pixels with pixel size of 0.3microns. Each frame is imaged with 4 fluorescent reporters yielding 4 image channels. We include division detection annotations for 10 videos, and tracking annotations for 3 videos. 3 videos total have annotations for both division detection and tracking.
DOI: 10.6084/m9.figshare.21183871.v8
title: Evaluating the Lithospheric Structure and Regional/Residual Bouguer Anomalies in Peninsular India through Potential Field Modeling and Thermal Analysis

description: The dataset provides comprehensive crustal and lithospheric mapping, with a specific focus on the peninsular region of India. This mapping is achieved through the integration of geoid, topography, and thermal analysis techniques under the framework of local isostasy and thermal steady-state conditions. The geoid dataset, which supports this mapping, is accessible for download in various orders and degrees from the ICGEM website (http://icgem.gfz-potsdam.de/calcgrid). Furthermore, the anomaly file presents the computed regional gravity effects and residual anomalies across the entire study area, derived from detailed crustal and lithospheric structures. Notably, all data utilized in the modeling process, including the geoid, and topography, are also available for download, enabling reproducibility and further analysis.
DOI: 10.6084/m9.figshare.7532693.v1
title: Carabus genital dimensions

description: Measurements of genital dimensions for QTL analysis in excel format.
DOI: 10.6084/m9.figshare.25814296.v1
title: Suppl Table 1 Ab validation.docx

description: Details of antibody validation
DOI: 10.6084/m9.figshare.17012315.v1
title: Supplementary Material for: Fetal Biometry: A Method for Comparing Local Curve Populations with Those from Major Reference Standards

description: <b><i>Objectives:</i></b> This study aimed to present a statistical method for assessing potential differences between fetal growth standard curves and local curve population. <b><i>Methods:</i></b> This was an observational repeated measures longitudinal study. We used a simulation model to generate random distribution of the international population from the IG-21st for fetal AC using the original equations of means and standard deviations (SD) obtained by the fractional polynomial method. A general linear model (GLM) allowed us to calculate new equations originating from simulated intergrowth-21st data (SIM_IG21st) and to compare them, by visual inspection of the estimated coefficients and their 95% CI, with the original published. We used further GLMs for evaluating the goodness of fitting of our local curve and comparing the relative equations of means and SD with those of SIM_IG21st. Finally, the impact of percentile differences between the 2 curves was quantified. <b><i>Results:</i></b> SIM_IG21st data yielded very similar coefficients than those of IG-21st reference to such an extent that means and SD and percentiles of interest were identical to the original. The comparison between SIM_IG21st curve and local curves showed a nonsignificant intercept and a slight difference of the 2 slopes (GA and GA<sup>3</sup>) for the equations of the mean. As a result, the local curve resulted in greater AC values. A difference in the intercept but not in the slopes (GA<sup>2</sup>, GA<sup>3</sup>, and GA<sup>3</sup> * lnGA) was instead reported for the equations of the SD. In the percentile comparison, the local curve resulted in an overestimation of the 3rd and the 10th percentile that corresponded to the 4th and 12th percentiles of SIM_IG21st, respectively. <b><i>Conclusion:</i></b> This statistical method allows sonographers to assess potential differences between standard curves and local curve population, enabling a more proper identification of abnormal growth trajectories.
DOI: 10.6084/m9.figshare.21276738.v2
title: Four-trophic level food webs confirm the safety of a biocontrol agent three years after release

description: Dataset and scripts <br>
DOI: 10.6084/m9.figshare.16629139.v4
title: Supplementary Data File 9

description: Evaluation Standards. Yeast evaluation standards for co-annotation prediction, module detection, and gene function prediction used in <strong>Fig. 2a, 3a, 4, 5a</strong> as well as the human co-annotation standard used in <strong>Fig. 5b</strong>.<br>
DOI: 10.6084/m9.figshare.22650748.v4
title: BC_cardiotox: A cardiotoxicity dataset for breast cancer patients

description: The BC_cardiotox database is a result of the collaboration between the University of A Coruña and the University Hospital of A Coruña. It contains information about 531 breast cancer patients and aims to enable the scientific community in conducting new research on cancer therapy-related cardiac dysfunction (CTRCD). The development of this side effect has important clinical and prognostic implications, and the availability of good predictors may allow its early detection. Although some risk factors are known, they are not sufficient to predict which patients will develop CTRCD during treatment. Therefore, in clinical practice it is recommended to monitor the appearance of CTRCD through blood laboratory tests and cardiac imaging tests. The echocardiogram, which allows to assess various parameters of the structure and function of the heart, is the main diagnostic tool. The Tissue Doppler Imaging (TDI), which shows the velocity of contraction and relaxation of the cardiac muscle, can be obtained by using this technique. This information, measured before treatment, may help in the early identification of CTRCD. Since the TDI shows a velocity as a function of time, it can be preprocessed to obtain a functional datum.<br>For each patient, baseline clinical variables are available, as well as the preprocessed baseline TDI. The code for the preprocessing of image data is also provided, together with two TDI images for reproducibility issues. The code is implemented in the statistical software R.<br>Corresponding author: Beatriz Piñeiro-Lamas (b.pineiro.lamas@udc.es / b.pineiro.lamas@gmail.com)
DOI: 10.6084/m9.figshare.5220676.v5
title: License and funder Crossref data for 396,000 articles published between 2014-2016

description: 396,000 records retrieved from Crossref, 11,000 from each month in 2014, 2015 and 2016. Analysed for the presence of Version of Record licence, Text/Data Mining licence, Funder data, and compared to a list of OA Journal ISSNs.<br><br>Number articles in OA Journals has risen from 5.1% to 7.5% in 2016.<br><br>Number articles with VoR license has risen from 7.5% to 11.3%.<br><br>Number articles with TDM license has risen from 25.9% to 31.4%.<br><br>Number articles with Funder data has risen from 1.1% to 3.4%.<br><br>OA journals are better at providing VoR licenses and Funder data.<br>
DOI: 10.6084/m9.figshare.12782105.v2
title: Development of reliably-distinguishable color legends for soil type maps based on calculation of the CIELAB color coordinates and differences

description: This MS Excel spreadsheet implements the procedure for calculating the CIELAB perceptually-uniform color attributes and color differences from the primary-defined RGB color coordinates. It may be used by map designers to obtain specific map legends comprising a large number of colors - all reliably-distinguishable from one another. The spreadsheet contains a starting list of 63 such colors – the Romanian color standard for soil type map legends (color-ordered, including lightness/chroma degrees, one color in a row). The CIELAB color attributes, color attribute differences and overall color difference are those defined by the CIELAB color model/space (CIE S 014-4:2007. Colorimetry - Part 4: CIE 1976 L*a*b* Colour space). This model/space represents a color by using three abstract coordinates (orthogonal axes): <i>L*</i> has values between 0 (black) and 100 (white), indicating the color lightness; <i>a* </i>has positive values indicating amounts of red, negative values indicating the amounts of green and the value zero indicating neutral grey; b* has positive values indicating amounts of yellow, negative values indicating the amounts of blue and the value zero indicating neutral grey. From these three coordinates, other important perceptually-uniform color attributes can be easily calculated: CIELAB chroma (C*<sub>ab</sub>), CIELAB hue angle (h<sub>ab</sub>), CIELAB attribute differences (DL*, Da*, Db*, DC*<sub>ab</sub>, Dh<sub>ab</sub>) and overall CIELAB color difference (DE*<sub>ab</sub>). The color differences calculated regarding a color are those between that color and the immediately-preceding color in the list. The list being color-ordered, the adjacent colors are normally the closest colors in the list, thus the color differences between them may be easily checked. Different other colors that appear as close in the list may be duplicated near others to see the color differences between them. The implemented calculation procedure consists of the following steps: (i) transformation of RGB coordinates to CIEXYZ coordinates, (ii) transformation of CIEXYZ coordinates to CIELAB coordinates (perceptually-uniform) and calculation of other CIELAB color attributes, and (iii) calculation of CIELAB color differences (perceptually-uniform). In order to obtain color lists (legends) appropriate for specific requirements, by using the "trial and error" method, the RGB coordinates (integer numbers between zero and 255) of the list colors can be easily modified/adjusted to define other colors that are reliably-distinguishable from one another, and/or new colors can be inserted into the list in an appropriate place (order). Usually, a color difference threshold of 10 DE*<sub>ab</sub> units ensures acceptably-distinguishable colors, but, naturally, this threshold may be increased. The “Recolor” button refreshes the colors in the “Colors” column of the spreadsheet, after RGB coordinates have been modified.
DOI: 10.6084/m9.figshare.28091879.v2
title: Consumption-based Carbon Emissions for Deforestation (2001–2015)

description: This dataset presents a global, consumption-based carbon emissions for deforestation from 2001 to 2015, offering a novel and comprehensive perspective on trade-related deforestation emissions. Created at a 1 km resolution, it integrates multiple data sources, including spatial data on deforestation, forest carbon fluxes, road networks, and global trade statistics.Key insights from this dataset reveal that global trade-related carbon emissions from deforestation account for 31.0% of total carbon emissions caused by deforestation worldwide. The data highlights that the top 20 countries are responsible for over 80% of these consumption-based emissions, with high-income countries accounting for 68.8% of the emissions hidden within trade flows. However, the role of lower-income countries is also growing, driven by rising consumption in wealthier nations.<b>Data Access</b>: The dataset is publicly available for further research and policy formulation. It can be used to analyze trade impacts on deforestation, assess emissions in various regions, and guide sustainable consumption and production strategies globally.
DOI: 10.6084/m9.figshare.4754308.v2
title: Alane adsorption on Si(100): VASP CONTCAR xyz

description: VASP structure file after optimization, in xyz format
DOI: 10.6084/m9.figshare.27611955.v1
title: 基于 Update Feedback 的 GAN.zip 示例

description: 这是包含 Xu 的论文 “Groundwater Pollutant Source Inversion with Sample Update Feedback -based Generative Adversarial Network” 的 Python 代码的 zip 文件。
DOI: 10.6084/m9.figshare.13072160.v1
title: Extended data workbook 6 LRRK2, HLA-DQB1 and CAMK1D protein-protein interaction network.xlsx

description: LRRK2, HLA-DQB1 and CAMK1D protein-protein interaction network coordinates
DOI: 10.6084/m9.figshare.21172420.v1
title: Data and analyzed scripts for 21 datasets of rodent DRG following peripheral nerve injury

description: Gzip file contains data (gene count table and result of differential expression) and analyzed scripts (trimming, mapping, quantification and differential expression analysis) for 21 collected public RNA-seq of rodent DRGs following peripheral nerve injury.
DOI: 10.6084/m9.figshare.25408543.v1
title: Direct shear tests for natural fractures with different normal stress and surface roughness in sandstone

description: This is the experimental data for the manuscript entitled <b><i>Temporal evolution of shear-induced dilatancy of rock fractures: Controls from surface roughness and normal stress</i></b>, which has been submitted for consideration for publication in <i>Geophysical Journal International</i>.The data includes the normal load, normal piston position, normal displacement, shear load, slip displacement, normal stress, and shear stress monitored in the 16 direct shear experiments in the Microsoft Excel file, as well as the topography data of the four surfaces with different joint roughness coefficient (JRC) in the four text files. The three columns in the text files indicates the x, y, and z coordinates of the surface asperities.