cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5127037.v1
title: Supplementary Material for: Consensus Development from the 5th Asia-Pacific Primary Liver Cancer Expert Meeting (APPLE 2014)

description: A key mission of the Asia-Pacific Primary Liver Cancer Expert (APPLE) Association is to ensure a coherent view for management of hepatocellular carcinoma (HCC) and to advance new treatment for this difficult disease. At the 5th APPLE meeting, held in July 2014 in Taipei, Taiwan, an APPLE consensus development program was established to facilitate discussion among experts in the Asia-Pacific region on pertinent issues for HCC management, including (1) surgery for intermediate/advanced-stage disease, (2) prevention of HCC recurrence after curative treatment, (3) optimizing imaging diagnosis, (4) radiotherapy: current practice and future clinical trials, and (5) the role of cytotoxic chemotherapy. A pre-congress questionnaire was undertaken with the consensus development committee members to help understand the current practice patterns for HCC in the Asia-Pacific region and to identify issues relating to optimal patient care and further clinical trials for which consensus needs to be developed. In this report, the results of the questionnaire are presented, and the pertinent issues identified by each consensus group for further discussion and consensus development are summarized.
DOI: 10.6084/m9.figshare.11948619.v1
title: Artifacts for MAESTRO: A Tool for Recommending Stack Overflow Posts for Fixing Runtime Exceptions

description: Artifact package for the paper "<i><b>Recommending Stack Overflow Posts for Fixing Runtime Exceptions using Failure Scenario Matching</b></i>". To appear at the 28th ACM Joint European Software Engineering Conference and Symposium on the Foundations of Software Engineering (ESEC/FSE 2020), November 8-13, 2020, Sacramento, CA, USA.
DOI: 10.6084/m9.figshare.20625810.v1
title: Mid-Miocene sea level altitude of the Qaidam Basin, northern Tibetan Plateau

description: Alkenones, carbonate carbon isotopes and leaf wax hydrogen isotopes from Dahonggou and Honggou sectio<strong>n</strong>s in the Qaidam Basin, northern Tibetan Plateau. <br> Supplementary Table 1. Alkenone concentrations, species, UK’37 and converted surface temperatures from the Dahonggou and Honggou sections. <br> Supplementary Table 2. δ13C, δ18O and Z values of carbonates from the Dahonggou section. <br> Supplementary Table 3. δ13C values of carbonates from the Honggou section. <br> Supplementary Table 4. δD of long-chain n-alkanes from the Dahonggou and Honggou sections. <br> <br>
DOI: 10.6084/m9.figshare.21085828.v1
title: RNA-seq data.xlsx

description: Maternal obesity was induced by feeding high-fat diet feed for 10 weeks in female C57/BL6 mice, while control mice were fed a standard diet. All female mice mated with healthy male mice and allowed to deliver spontaneously. A subset of female offspring (3 from control dams and 3 from obese dams) were sacrificed by cervical dislocation at 3 weeks of age, and liver samples were used for RNA-sequencing (mRNA and lncRNA) analysis.
DOI: 10.6084/m9.figshare.27119412.v1
title: <b>Syrphids in the city: a 10-year citizen science program sheds light on how the greenness and quality of green spaces impact flower flies</b>

description: The supplementary dataset for the manuscript is entitled "<b>Syrphids in the City: a 10-year citizen science program sheds light on how the greenness and quality of green spaces impact flower flies</b>"
DOI: 10.26188/28760813.v1
title: <sub>Public Places: Student Village Melbourne Laundry improvisation</sub>

description: Public Places: Jayson Cooper (solo piano)<br>Music performed with public places and recorded on a phone. Music is everywhere and everything; places and environments then become unique holders of their own songs that are always evolving within the specific acoustics of those places. And when instruments are left or brought into these places they invite improvisation-with. These recordings are moments in time where the music being performed is only one part of the environment at that time. <br><br>Student Village Melbourne Laundry is the name of the location on the audio recording of this piano improvisation in tune with the public place and is on the campus of the University of Melbourne Law Building, performed by Jayson CooperPresented PESA conference New Zealand 2023
DOI: 10.6084/m9.figshare.26602999.v1
title: Additional file 8 of Using the collaborative cross to identify the role of host genetics in defining the murine gut microbiome

description: Additional file 8: Table S4. LOD scores.
DOI: 10.6084/m9.figshare.27125340.v1
title: <b>Digital twin-driven dynamic optimization of flexible job shop scheduling considering operations outsourcing</b>

description: This is the experimental data of the manuscript entitled "Digital twin-driven dynamic optimization of flexible job shop scheduling considering operations outsourcing".
DOI: 10.6084/m9.figshare.11837097.v3
title: PopAlign_Data

description: <br>This file contains single-cell RNA-seq datasets associated with : <br><br>Chen, S, et al. 2020. “Dissecting Heterogeneous Cell Populations across Drug and Disease Conditions with PopAlign.” <i>bioRxiv</i>. https://doi.org/10.1101/421354.<br><br>------------------------ DATASETS ------------------------<br>Each data folder includes:barcodes.tsv : cell barcodes<br>genes.tsv : genes[ Name ].mtx : sparse matrix file of transcript counts<br><br>Subfolders<br>MM1-MM4:---------------22,294 Peripheral Blood Mononuclear Cells (PBMCs) from four multiple myeloma patients.Data collected using 10x 3' Gene Expression v2 kit. <br>healthy1/healthy2: -------------------------<br>12,865 PBMCs from two healthy donors. Data collected using 10x 3' Gene Expression v2 kit. <br>drugscreen:<br>---------------<br>33,482 cells40 drugs applied at 1uM for 24 hours onto PBMCs collected from a single healthy donor. Data collected using 10x 3' Gene Expression v3 kit. Includes a metadata file (meta.csv) with each row corresponding to each cell in the gene expression matrix. <br>Drugs tested:Meprednisone, Dexrazoxane HCl (ICRF-187, ADR-529), Etodolac, Phenylbutazone, Pomalidomide, Budesonide, Loteprednol etabonate, CTRL, Betamethasone Valerate, Febuxostat, Sulfasalazine, Flurbiprofen, Mianserin HCl, Naproxen Sodium, Triamcinolone Acetonide, Acetylcysteine, Everolimus (RAD001), Isotretinoin, Ibuprofen, Doramapimod (BIRB 796), Allopurinol Sodium, Tranilast, Cyclosporine, Adapalene, Thalidomide, Celecoxib, Ketoprofen, Loratadine, Tazarotene, Bimatoprost, Cetirizine DiHCl, Mesalamine, Mercaptopurine (6-MP), Busulfan, Zafirlukast, Zileuton, Latrepirdine 2HCl, Rapamycin (Sirolimus), Alprostadil, Masitinib (AB1010), Methotrexate<br>
DOI: 10.6084/m9.figshare.24203463.v1
title: Data set

description: Data Set
DOI: 10.6084/m9.figshare.25869202.v1
title: <b>School Counselor Noncognitive Skills Scale (SCNSS)</b>

description: In this dataset, the scale consists of 27 items and assess 3 subscales: VLS= values and decision-making, SSK=social/emotional skills and future planning=FTR
DOI: 10.6084/m9.figshare.5720119.v1
title: Tannic extract potential as natural wood preservative of Acacia mearnsii

description: ABSTRACT High toxicity of the preservatives most frequently used in wood treatment and the resulting risks of handling pose a threat to small producers and to the environment. In an attempt to mitigate these problems, the present study was conducted with the objective of evaluating the preservative effect of tannic extract on biodeterioration of Acacia mearnsii wood. For this purpose, untreated and preserved specimens, some with tannin extract and some with a preservative mixture based on CCB (Chromated Copper Borate), were submitted to accelerated rotting trials with the fungus that causes white rot (Pycnoporus sanguineus) for 16 weeks. The evaluations were made with a basis on weight loss and chemical components analysis, and they showed that the natural resistance of Acacia wood is moderate when exposed to the white rot fungus. The tannin concentrations showed similar effects to those of the CBB mixture in all evaluations, i.e., they significantly increased the biological resistance of the material, which started to be classified as very resistant to the fungus. Overall, the results suggest that tannin can be considered as a potential natural preservative product.
DOI: 10.6084/m9.figshare.1173286.v1
title: Figure data from Faircloth et al. 2014 (10.1111/1755-0998.12328)

description: Figure data (Illustrator file, modified images, and image sources) used as part of Faircloth et al. 2014 "Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera" (doi:10.1111/1755-0998.12328)
DOI: 10.6084/m9.figshare.13622408.v1
title: Supplementary Material for: Modification and Validation of the Phosphate Removal Model: A Multicenter Study

description: <b><i>Background:</i></b> Our research group has previously reported a noninvasive model that estimates phosphate removal within a 4-h hemodialysis (HD) treatment. The aim of this study was to modify the original model and validate the accuracy of the new model of phosphate removal for HD and hemodiafiltration (HDF) treatment. <b><i>Methods:</i></b> A total of 109 HD patients from 3 HD centers were enrolled. The actual phosphate removal amount was calculated using the area under the dialysate phosphate concentration time curve. Model modification was executed using second-order multivariable polynomial regression analysis to obtain a new parameter for dialyzer phosphate clearance. Bias, precision, and accuracy were measured in the internal and external validation to determine the performance of the modified model. <b><i>Results:</i></b> Mean age of the enrolled patients was 63 ± 12 years, and 67 (61.5%) were male. Phosphate removal was 19.06 ± 8.12 mmol and 17.38 ± 6.75 mmol in 4-h HD and HDF treatments, respectively, with no significant difference. The modified phosphate removal model was expressed as Tpo<sub>4</sub> = 80.3 × <i>C</i><sub>45</sub> − 0.024 × age + 0.07 × weight + β × clearance − 8.14 (β = 6.231 × 10<sup>−3</sup> × clearance − 1.886 × 10<sup>−5</sup> × clearance<sup>2</sup> – 0.467), where <i>C</i><sub>45</sub> was the phosphate concentration in the spent dialysate measured at the 45th minute of HD and clearance was the phosphate clearance of the dialyzer. Internal validation indicated that the new model was superior to the original model with a significantly smaller bias and higher accuracy. External validation showed that <i>R</i><sup>2</sup>, bias, and accuracy were not significantly different than those of internal validation. <b><i>Conclusions:</i></b> A new model was generated to quantify phosphate removal by 4-h HD and HDF with a dialyzer surface area of 1.3–1.8 m<sup>2</sup>. This modified model would contribute to the evaluation of phosphate balance and individualized therapy of hyperphosphatemia.
DOI: 10.6084/m9.figshare.21679601.v1
title: The <i>Rauvolfia tetraphylla</i> genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids

description: Rauvolfia_tetraphylla_v1.1.transcripts (Predicted transcripts)<br>
Rauvolfia_tetraphylla_v1.1.cds (Predicted CDS)<br>
Rauvolfia_tetraphylla_v1.1.gff (Genome annotation file (GFF))<br>
Rauvolfia_tetraphylla_v1.1.pep (Predicted proteins)<br>
Rauvolfia_tetraphylla_genome_v1.0_2019_Oct_27.fasta (Genome)<br>
Rauvolfia_tetraphylla_Trinotate.xls (Gene functional annotation)
 Rauvolfia_tetraphylla_TPM.csv  (transcript relative expression matrix (TPM)
DOI: 10.6084/m9.figshare.25638285.v1
title: Supplementary Material for: Hepatitis and Vasodilatory Shock due to an Unsuspected Culprit: A Rare Presentation of Multisystem Langerhans Cell Histiocytosis

description: Introduction: 
Langerhans cell histiocytosis (LCH) is a rare hematologic condition which can affect multiple organ systems and has variable presentation. LCH is more commonly seen as a malignancy of childhood. LCH in adulthood can have poor outcomes depending on the involvement of critical organs. 

Case Presentation:
We report a case of a 71-year-old female who presented with progressive weakness, weight loss, diarrhea, and jaundice, and had been undergoing outpatient workup for elevated liver enzymes for the last two years. She required admission to the intensive care unit for vasodilatory shock requiring vasopressor and chronotropic support. Imaging showed an underlying multi organ process involving the gastrointestinal tract, liver, spleen, and central nervous system. A repeat liver biopsy after a prior inconclusive one revealed the diagnosis of multisystem LCH presenting as secondary sclerosing cholangitis. 

Conclusion:
The uniqueness of this multisystem LCH case lies not only in its rarity but also in the diagnostic journey that necessitated a repeat biopsy for a conclusive diagnosis. Early identification and targeted intervention can help in ensuring better patient outcomes, especially when the presentation can overlap with various other possible conditions.
DOI: 10.6084/m9.figshare.28442381.v1
title: Training_dataset.xlsx

description: In order to evaluate fetal health metrics based on cardiotocography (CTG) analysis, this dataset is utilized for training. In order to train the health of the fetus, it includes functions like the baseline fetal heart rate (FHR), accelerations, fetal movements, uterine contractions, decelerations (normal, suspicious, pathological), and short-term variability (STV). Machine learning models are typically trained using 80% of the data, with 20% reserved for testing to assess model performance and guarantee precise forecasts for fetal health outcomes
DOI: 10.6084/m9.figshare.28468529.v1
title: Global GIS Faculty CSV file

description: The two files is the csv version of PhD Origin and Current Affiliation of Global GIS Faculty
DOI: 10.6084/m9.figshare.7381556.v2
title: Image-Based Prognostics Using Penalized Tensor Regression

description: This article proposes a new methodology to predict and update the residual useful lifetime of a system using a sequence of degradation images. The methodology integrates tensor linear algebra with traditional location-scale regression widely used in reliability and prognostics. To address the high dimensionality challenge, the degradation image streams are first projected to a low-dimensional tensor subspace that is able to preserve their information. Next, the projected image tensors are regressed against time-to-failure via penalized location-scale tensor regression. The coefficient tensor is then decomposed using CANDECOMP/PARAFAC (CP) and Tucker decompositions, which enables parameter estimation in a high-dimensional setting. Two optimization algorithms with a global convergence property are developed for model estimation. The effectiveness of our models is validated using two simulated datasets and infrared degradation image streams from a rotating machinery.
DOI: 10.25442/hku.28782557.v1
title: Supporting data for "Developing and Evaluating the Parent CARES-LGB Intervention for Nonaccepting Parents of LGB Adults in Malaysia and Singapore"

description: This is the research dataset deposited with permanent embargo due to the sensitive nature of the data. The dataset refers to the development and evaluation of the Parent CARES-LGB intervention that is informed by Emotionally Focused Therapy, designed to support nonaccepting parents of LGB individuals in Malaysia and Singapore. This is a clinical research study that involves development of a conceptual framework for intervention development, followed by intervention development and validation by stakeholders, and piloting the intervention on feasibility, preliminary effectiveness, and user experiences.
DOI: 10.6084/m9.figshare.12462416.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-71054 to JVASP-74989)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.25101428.v2
title: Analyzing the Accessibility of GitHub Repositories for PyPI and NPM Libraries

description: The dataset contains valid GitHub repository URLs of PyPI and NPM libraries and reasons for invalid URLs. In this context, a valid URL is confirmed by an HTTP error code 200 and conforms syntactically to a standard GitHub URL scheme. Reasons for invalid reason can be among the following:No URL assigned at all404 status code returned by ecosystem endpoints404 or other GitHub related status codesUse of private or unknown CMSUse of GitLab or BitBucket as CMSMalformed CMS URL
DOI: 10.6084/m9.figshare.25479883.v1
title: Idealized influence, adaptive performance and self-determination

description: Although extant literature has discussed the importance of leadership in influencing employees, limited studies have explored the effect of aspects of leadership on employees’ self-determination from the perspective of employee adaptability. Our study investigates the effect of leader’s idealized influence on employee’s self-determination, and the mediating role of employee’s adaptive performance.
DOI: 10.6084/m9.figshare.25608312.v1
title: significant gene list

description: significant gene list
DOI: 10.4121/15158040.v1
title: Data supplementary to the master thesis: 'Politics in frugal innovations: Assessing the relationship between political risks and the market diffusion of frugal solar-PV systems'

description: This dataset is made for the thesis project of S. Kooijman (studentnumber 4473795), Msc Complex Systems Engineering and Management, TU Delft, The Netherlands. This data set was made in order to analyse the relationship between political risks and the market diffusion of frugal solar-PV systems.<br>This dataset includes the sales of solar pico systems and solar home systems (frugal energy innovations). The political risk-index (PR-index) consists of three types of sub-variables all which include various sub-factors. Also control variables were included. <br>
DOI: 10.6084/m9.figshare.26688431.v1
title: Additional file 3 of A genotyping array for the globally invasive vector mosquito, Aedes albopictus

description: Additional file 3. Segregation analysis from laboratory crosses.
DOI: 10.6084/m9.figshare.3523685.v1
title: Appendix B. Evaluations of the potential methodological problems in relation to the species selection, the spatial sampling, and the variable plot sizes.

description: Evaluations of the potential methodological problems in relation to the species selection, the spatial sampling, and the variable plot sizes.
DOI: 10.6084/m9.figshare.17040731.v2
title: Astroturfing as a strategy for manipulating public opinion on Twitter during the pandemic in Spain

description: Data set associated with the Astroturfing study as a strategy for manipulating public opinion on Twitter during the pandemic in Spain.<br>There are two files:- Phillipines_16062020.RData, with the first round of data collection, was carried out in the study carried out, with all the tweets during about three days. This database was used to identify users considered in the study.- Phillipines_280cuentas.RData, with the tweets collected from the selected accounts from the analysis of the data collected in Phillipines_16062020.RData, for almost four months.<br>User identification variables were eliminated due to the privacy conditions of Twitter that allow the analysis of groups or public figures, but not of individuals.
DOI: 10.6084/m9.figshare.24447481.v1
title: clinical data

description: This is a study of lead poisoning in children.
DOI: 10.6084/m9.figshare.25499038.v1
title: Motility data (velocity and linearity, sample videos of microcapillary chemotactic test) of rainbow trout, common carp and sterlet spermatozoa in the presence of ovarian fluid

description: Spawning behaviour and reproductive strategies of various fish species exhibit remarkable adaptability, enabling them to effectively leverage sperm competition and selection mechanisms within their distinct environmental conditions. This study compares the impact of ovarian fluid (OF) on fertilisation performance in three taxonomically distant freshwater fish species: rainbow trout, sterlet, and common carp. These species, characterised by diverse spawning behaviours, exhibit variations in OF attributes, influencing gamete performance and <i>in vitro</i> fertilisation outcomes. Rainbow trout, spawning in streams, release eggs into an OF-rich cloud, promoting enhanced motility and prolonged movement of spermatozoa. Sterlet deposits eggs in multiple batches enveloped in OF, temporarily restraining spermatozoa’s motility. This delay mechanism may hold sperm cells from one or more males until OF dilution restores motility. Common carp spermatozoa show high sensitivity to OF, shifting from linear to exploratory motion in the presence of even low OF concentrations, which is beneficial for spawning scenarios in shallow waters involving active mixing of gametes by parent bodies<i>. In vitro</i> fertilisation assays supported these suppositions. The findings highlight the significant OF influence on male gamete performance, aligning with species-specific spawning behaviours and offering insights into the interplay between reproductive strategies and the gamete encounter microenvironment in external fertilisers.The files contain data on curvilinear velocity (VCL, um/s) and path linearity (LIN) of common cart, rainbow trout and sterlet spermatozoa in aqueous solutions of ovarian fluid from respective species. Motility parameters were evaluated in media with varying concentrations of ovarian fluid (100%, 50%, 25%, 10%, and 0%). The files contain sample videorecords of the chemotactic microcapillary test conducted to assess the response of spermatozoa to the injection of ovarian fluid or egg water into the activating medium using glass microcapillaries. This method represents an accumulation assay conventionally applied for simple spermatozoa chemotaxis analysis. For detailed methods, please refer to the accompanying manuscript.
DOI: 10.6084/m9.figshare.27054835.v1
title: Hippocampus_trimaculatus_assembly_gene_annotation

description: Hippocampus trimaculatus assembly and gene annotation
DOI: 10.6084/m9.figshare.7857488.v1
title: Supplementary Material for: Mice Lacking Fatty Acid-Binding Protein 5 Are Resistant to <b><i>Listeria monocytogenes</i></b>

description: To investigate the role of fatty acid-binding protein 5 (FABP5) in infectious diseases, FABP5-deficient mice were challenged with <i>Listeria monocytogenes</i>, a facultative intracellular bacterial pathogen. Interestingly, FABP5-deficient animals were able to clear the infection within 3 days whereas control wild-type (WT) animals showed comparatively higher bacterial burdens in the liver and spleen. Sections of infected tissues showed an increase in inflammatory foci in WT mice compared to FABP5-deficient mice. FABP5-deficient mice had lower circulating inflammatory cytokines and increased inducible nitric oxide synthase production. FABP5-deficient mouse bone marrow-derived macrophages produced higher levels of nitrite anion than their WT counterparts in response to various stimuli. Additionally, in contrast to FABP5<sup>–/–</sup> mice, transgenic mice overexpressing FABP5 in myeloid cells (LysM-Cre driven) showed decreased survival rates and increased bacterial burden and inflammatory cytokines. Overall, these findings suggest that increased FABP5 levels correlate with a higher <i>L. monocytogenes</i> bacterial burden and elevated subsequent inflammation.
DOI: 10.25421/yorksj.28696907.v1
title: Antenatal care visit and Machine learning dataset

description: Dataset for the study on machine learning approach to predict determinants of antenatal care visit among women of reproductive age in sub-Saharan Africa