cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1410884.10fu
title: SH1410884.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1410885.10fu
title: SH1410885.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.vd52kq
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Somalia, Ethiopia, Eritrea, Djibouti, Kenya)",
 "OccurrenceStatus is Present",
 "TaxonKey is Commiphora myrrha"
 ]
}

 The dataset includes 102 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019028-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvu59c
title: Occurrence Download

description: A dataset containing 13136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ceratophyllum demersum"
 ]
}

 The dataset includes 13136 records from 412 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019029-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wm33rd
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Polyplacophora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((170 -20,180 -20,180 -10,170 -10,170 -20))"
 ]
}

 The dataset includes 115 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019027-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y26jdd
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asparagus setaceus",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 107 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020221-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/s33-0sn-5y4
title: Electra pilosa (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xx6-djf-dg0
title: Prionocidaris A. Agassiz, 1863

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t8h-6cq-zrs
title: Celleporina Gray, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yxy-zb9-49s
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3cc-ckn-zdm
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ns4-41s-30b
title: Hoplocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/br5-x4w-p2s
title: Sorex Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j50-b54-zll
title: Cellaria fistulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/39k-df2-e3g
title: Catenicella de Blainville, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1q2-v5l-r8f
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pyd-mff-a4k
title: Crisulipora Robertson, 1910

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3fy-gl6-dtv
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nld-bze-azr
title: Aegocrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/amw-e2v-13w
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n0p-bkc-8yy
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dl2-pd3-5t7
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fgp-ajd-0vn
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9xa-18e-eep
title: Celleporaria Lamouroux, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fw5-f19-hzs
title: Crisidia Milne Edwards, 1838

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/31m-waw-h2s
title: Peronella lesueuri (L. Agassiz, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8l5-bmj-kkp
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tzm-19d-3h6
title: Cheloniceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5pv-xgg-hdp
title: Cellaria elongatoides Bassler, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/91d-d46-2ws
title: Discoporella d'Orbigny, 1852

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/125-enq-09k
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m3k-7f9-yzr
title: †Miogypsina Sacco, 1893

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/728-2r2-p54
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xl2-h9b-0pe
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5xp-wsw-emt
title: Nellia tenella (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0p4-9mr-27c
title: Pleuromucrum gorgonense (Hastings, 1930)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q4j-xpg-w05
title: Jellyella tuberculata (Bosc, 1802)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j29-gt0-f6x
title: Celleporaria Lamouroux, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r9h-ym2-aq5
title: Cupuladria Canu & Bassler, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ppq-lvs-g8f
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0pb-c2w-4yp
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0s6-rgz-nae
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.29936189
title: datasets for QKAR study

description: Computational toxicology plays an important role in risk assessment and drug safety. The field has been traditionally dominated by Quantitative Structure-Activity Relationships (QSARs), which predict toxicological effects based solely on chemical structure. Although QSARs have achieved successes, their structure reliance limits drug toxicity predictions, where small structural modifications may cause major toxicity changes. Advances in artificial intelligence (AI), especially text embedding and generative AI, provide an opportunity to enhance toxicity predictions by leveraging broader chemical knowledge and its integration with structural data. In this study, we propose a novel framework, Quantitative Knowledge-Activity Relationships (QKARs), which predict toxicity using domain-specific knowledge. We developed QKAR models for two drug toxicity endpoints, drug-induced liver injury (DILI) and drug-induced cardiotoxicity (DICT), using three different knowledge representations with varying levels of knowledge. The representations based on comprehensive knowledge of the drugs yielded better prediction than those with simpler knowledge. Five machine learning algorithms of distinct complexity were applied in QKAR models, and we observed little association between model complexity and performance. Further, we evaluated QKARs against QSARs on the same endpoints using identical datasets. We found that QKARs consistently outperformed QSARs for DILI and DICT. Notably, QKARs demonstrated better capability than QSARs in differentiating drugs with similar structures but different liver toxicity profiles. We also investigated integrating<br>knowledge-based and structure-based representations, Q(K+S)ARs, for further enhanced prediction<br>accuracy. Our findings demonstrate the potential of QKARs as a robust alternative to QSARs, offering additional opportunities in drug toxicity assessments by leveraging both domain-specific knowledge and structural data.<br><br>The DILI.xlsx and DICT.xlsx hold the data used in this study.
DOI: 10.6084/m9.figshare.29936189.v1
title: datasets for QKAR study

description: Computational toxicology plays an important role in risk assessment and drug safety. The field has been traditionally dominated by Quantitative Structure-Activity Relationships (QSARs), which predict toxicological effects based solely on chemical structure. Although QSARs have achieved successes, their structure reliance limits drug toxicity predictions, where small structural modifications may cause major toxicity changes. Advances in artificial intelligence (AI), especially text embedding and generative AI, provide an opportunity to enhance toxicity predictions by leveraging broader chemical knowledge and its integration with structural data. In this study, we propose a novel framework, Quantitative Knowledge-Activity Relationships (QKARs), which predict toxicity using domain-specific knowledge. We developed QKAR models for two drug toxicity endpoints, drug-induced liver injury (DILI) and drug-induced cardiotoxicity (DICT), using three different knowledge representations with varying levels of knowledge. The representations based on comprehensive knowledge of the drugs yielded better prediction than those with simpler knowledge. Five machine learning algorithms of distinct complexity were applied in QKAR models, and we observed little association between model complexity and performance. Further, we evaluated QKARs against QSARs on the same endpoints using identical datasets. We found that QKARs consistently outperformed QSARs for DILI and DICT. Notably, QKARs demonstrated better capability than QSARs in differentiating drugs with similar structures but different liver toxicity profiles. We also investigated integrating<br>knowledge-based and structure-based representations, Q(K+S)ARs, for further enhanced prediction<br>accuracy. Our findings demonstrate the potential of QKARs as a robust alternative to QSARs, offering additional opportunities in drug toxicity assessments by leveraging both domain-specific knowledge and structural data.<br><br>The DILI.xlsx and DICT.xlsx hold the data used in this study.
DOI: 10.3535/02m-j1t-st4
title: Polyptychites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2r9-0yv-xgw
title: Cominella J. E. Gray, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1w1-wbm-era
title: Smittina Norman, 1903

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/282-8xn-80e
title: Celleporina costazii (Audouin, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d0z-6kk-bat
title: Discoporella umbellata (Defrance, 1823)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ryc-ccq-caj
title: Metrarabdotos Canu, 1914

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lbd-ses-sgs
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v04-jg5-n56
title: Cellaria fistulosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.j3myg6
title: Occurrence Download

description: A dataset containing 991 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tlacuatzin"
 ]
}

 The dataset includes 991 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020223-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ewk-jq4-rnf
title: Maianthemum F.H.Wigg.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mh6-4hb-27h
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25549/inscriptifact-ouc110846542
title: Persepolis Fortification Anepigraphic Tablet 0311.201, PFAnep 0311.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0311.201, PFUT 0311-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Left side of tablet broken off, part of right edge. Breakage on upper and bottom edges. Damaged reverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110843951
title: Persepolis Fortification Anepigraphic Tablet 0324.202, PFAnep 0324.202

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0324.202, PFUT 0324-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge, obverse, upper edge. ❧ [Physical Object Note:] Right edge of tablet broken. Damage and cracks on obverse, reverse. Right part of reverse missing. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846574
title: Persepolis Fortification Anepigraphic Tablet 0335.201, PFAnep 0335.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0335.201, PFUT 0335-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse. ❧ [Physical Object Note:] Bottom edge broken off, as well as right edge. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110842475
title: Persepolis Fortification Anepigraphic Tablet 0318.201, PFAnep 0318.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0318.201, PFUT 0318-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Bottom edge and right part of tablet broken. Much of reverse is missing. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846536
title: Persepolis Fortification Anepigraphic Tablet 0311.201, PFAnep 0311.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0311.201, PFUT 0311-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Left side of tablet broken off, part of right edge. Breakage on upper and bottom edges. Damaged reverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110842469
title: Persepolis Fortification Anepigraphic Tablet 0318.201, PFAnep 0318.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0318.201, PFUT 0318-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Bottom edge and right part of tablet broken. Much of reverse is missing. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846531
title: Persepolis Fortification Anepigraphic Tablet 0311.201, PFAnep 0311.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0311.201, PFUT 0311-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on left edge, obverse. ❧ [Physical Object Note:] Left side of tablet broken off, part of right edge. Breakage on upper and bottom edges. Damaged reverse. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110842444
title: Persepolis Fortification Anepigraphic Tablet 0318.201, PFAnep 0318.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0318.201, PFUT 0318-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Bottom edge and right part of tablet broken. Much of reverse is missing. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110846565
title: Persepolis Fortification Anepigraphic Tablet 0335.201, PFAnep 0335.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0335.201, PFUT 0335-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on obverse, reverse. ❧ [Physical Object Note:] Bottom edge broken off, as well as right edge. (Upper and bottom edges may be reversed)
DOI: 10.25549/inscriptifact-ouc110842434
title: Persepolis Fortification Anepigraphic Tablet 0318.201, PFAnep 0318.201

description: [Text Description:] Administrative tablet with seals ❧ [Text or Publication Number Note:] PFAnep 0318.201, PFUT 0318-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge. ❧ [Physical Object Note:] Bottom edge and right part of tablet broken. Much of reverse is missing. (Upper and bottom edges may be reversed)