cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/7mkzx-nzd38
title: Rat INS-1E pancreatic beta cells

description: Raw data files of Rat INS-1E pancreatic beta cells
description: <strong>Tilt Series Date:</strong> 2019-10-23</p>
<strong>Data Taken By:</strong> Xianjun Zhang</p>
<strong>Species / Specimen:</strong> Rat INS-1E pancreatic beta cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Microscope:</strong> 0</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-23-17/rawdata/</p>tomo17.mrc,  Tilt Series (Pixel Size 0.0 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-23-17/rawdata/tomo17.mrc"
        > <i class="download icon"></i> Download </a></p>

        tomo17.rec,  Reconstruction (Pixel Size 0.0 nm), 389.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/563gk-tdj52
title: Bdellovibrio Continuous Tilting

description: Raw data. Gain-normalization and defects correction have not been applied. For each dataset, 2 separate tilt-series were collected bidirectionally using the continuous-tilting method: first:0 to -60 degrees, then: 0 to 60 degrees. The two stacks were then combined using IMOD's Newstack command.
description: <strong>Tilt Series Date:</strong> 2018-03-26</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Bdellovibrio bacteriovorus</p>
<strong>Strain:</strong> HD100</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 0.12°, constant angular increment, dosage: 103.0 eV/Å²,  defocus: -2.5 μm,  magnification: 53000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-03-26-7/rawdata/</p>BD_53kx_07.mrc,  Tilt Series (Pixel Size 0.2743 nm), 14.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-03-26-7/rawdata/BD_53kx_07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Mar26_Correction_Files.zip,  Gain and defects correction, 25.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rw341-9jg25
title: JV9279

description: Raw data files of JV9279
description: <strong>Tilt Series Date:</strong> 2018-11-13</p>
<strong>Data Taken By:</strong> Jun Zhang</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -4.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jza2018-11-13-70/rawdata/</p>tilt080.mrc,  Tilt Series (Pixel Size 0.2654 nm), 1.6 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tilt080_full.rec,  Reconstruction (Pixel Size 1.0616 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.r6npqh
title: Occurrence Download

description: A dataset containing 7370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago lanceolata",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7370 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044077-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/jaxr5-1dp81
title: Hylemonella gracilis

description: Session notes:  Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2008-11-01</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> ATCC 19624</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2008-11-01-2_slicer6140.jpg: REZ mba2008-11-01-2_slicer6143.jpg: Flagella motor
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2008-11-01-2/rawdata/</p>08nov01a_b17x1_065.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov01a_b17x1_065.rec,  Reconstruction (Pixel Size 1.288 nm), 54.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7j6vs-06e90
title: Rhodobacter sphaeroides

description: Session notes: First axis of dual tilt data collection session for PS vesicles on quantifoil Tilt series notes: Grid hole with photosynthetic vesicles Tomogram notes: Dual axis
description: <strong>Tilt Series Date:</strong> 2010-12-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 55.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 6.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-12-16-4/rawdata/</p>10dec16c_PS-quanti3_006_a.st,  Tilt Series (Pixel Size 0.512 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10dec16c_PS-quanti3_006_.rec,  Reconstruction (Pixel Size 1.024 nm), 314.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-12-16-4/3dimage_21287/10dec16c_PS-quanti3_006_.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/kj4ts-n2n72
title: Hylemonella gracilis

description: Session notes:  Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2008-07-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Hylemonella gracilis</p>
<strong>Strain:</strong> ATCC 19624</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2008-07-28-2_slicer8344.jpg: Hylemonella gracilis .  Ribosome excluding zone
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2008-07-28-2/rawdata/</p>08jul28b_box17_stack21.st,  Tilt Series (Pixel Size 0.632 nm), 2.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08jul28b_box17_stack21.rec,  Reconstruction (Pixel Size 1.277 nm), 280.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nh6ex-fex89
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025, SIRT reconstruction, removed gold. Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-24</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-04-24-21_slicer7917.jpg: Campylobacter jejuni .  tube mba2012-04-24-21_slicer7920.jpg: Campylobacter jejuni .  filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-21/rawdata/</p>12apr24a_flgP_0036.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-24-21/rawdata/12apr24a_flgP_0036.st"
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        12apr24a_flgP_0036.rec,  Reconstruction (Pixel Size 1.56 nm), 112.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fjytc-6pp95
title: Bacillus subtilis

description: Session notes: L-forms of Bacillus subtilis 168 from plate #1 Tilt series notes: L-form on carbon. Tomogram notes: L-form with filaments in middle. Layer outside membrane at points, towards top. Filaments:230,296,163 (   )
description: <strong>Tilt Series Date:</strong> 2010-09-26</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 66.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-26-6/rawdata/</p>10sep26a_Lform1_010.st,  Tilt Series (Pixel Size 0.95 nm), 2.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-09-26-6/rawdata/10sep26a_Lform1_010.st"
        > <i class="download icon"></i> Download </a></p>

        10sep26a_Lform1_010.rec,  Reconstruction (Pixel Size 1.9 nm), 265.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.d3jpgh
title: Occurrence Download

description: A dataset containing 385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago lanceolata",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 385 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044078-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/2egq8-vgw76
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-18_slicer5178.jpg: Chemoreceptor array
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-18/rawdata/</p>12sep28a_cjj0413_0026.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-18/rawdata/12sep28a_cjj0413_0026.st"
        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0026.rec,  Reconstruction (Pixel Size 1.12 nm), 39.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.9j2qbp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops samoensis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044079-250811113504898/datasets/export for details.
DOI: 10.7910/dvn/oehedi
title: Latinobarometer 2004

description: The Latinobarometer is an annual survey conducted in 18 Latin American countries. The survey measures public opinions, attitudes and behaviors on topics covering:
Economics and International Trade;
 Integration and Trade Agreements;
 Democracy;
 Politics and Institutions;
 Civic Culture and Participation;
 Social Capital;
 Environment; 
 and Gender and Gender Discrimination
DOI: 10.22002/p5z9y-34z40
title: Project: storage_granules

description: Session notes: Tilt series of intact R. eutropha cells from for 9hrs in minimal media. Tilt series notes: Intact cell. Fat granules. Tomogram notes: Many granules of all sizes
description: <strong>Tilt Series Date:</strong> 2009-03-26</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  mba2009-03-26-7_slicer5628.jpg: Peptidoglycan mba2009-03-26-7_slicer5631.jpg: Dividing mba2009-03-26-7_slicer5632.jpg: Filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-26-7/rawdata/</p>09mar26a_b401_1_006.st,  Tilt Series (Pixel Size 0.95 nm), 889.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-26-7/rawdata/09mar26a_b401_1_006.st"
        > <i class="download icon"></i> Download </a></p>

        09mar26a_b401_1_006.rec,  Reconstruction (Pixel Size 1.9 nm), 188.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tyg6x-fa127
title: Mycobacterium marinum

description: sporulating
description: <strong>Tilt Series Date:</strong> 2015-05-19</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Mycobacterium marinum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-19-9/rawdata/</p>Mmarinum0009.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-19-9/rawdata/Mmarinum0009.mrc"
        > <i class="download icon"></i> Download </a></p>

        Mmarinum0009_full.rec,  Reconstruction (Pixel Size 2.52 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.57830/2313806
title: Black Rail Inventory at Padre Island National Seashore 2024 - Open Format Dataset

description: The Eastern Black Rail is an elusive, federally threatened marsh bird with declining populations, making effective monitoring and habitat management critical. This study investigated Black Rail occupancy and habitat characteristics at Padre Island National Seashore (PAIS) using a combination of call-playback surveys, passive acoustic monitoring, trail cameras, and vegetation sampling. Over a survey season from March to July 2024, call-playback surveys detected Black Rails at eight locations. Both detectability and occupancy were low, with a detection probability of only 8.8% and with only 10.6% of apparently suitable habitat occupied. Vegetation sampling revealed that survey points were dominated by emergent vegetation, with limited coverage by shrubs, saltgrass, and cordgrass. The above-ground biomass (AGB) of grassy and herbaceous vegetation has been positively correlated with occupancy at other sites and the relatively low AGB observed at sites on PAIS may help explain the limited occupancy observed in this study. Black Rails typically avoid areas of extensive woody vegetation, and prescribed fire can be very effective at reducing woody vegetation encroachment. Consequently, prescribed fire is likely an effective way to manage units for continued Black Rail persistence. However, adjusting the interval between burns may be required to allow AGB to increase to a higher level in order to increase occupancy.
DOI: 10.22002/6m7gt-9ph24
title: Pombe Cryosections

description: Raw data files of Pombe Cryosections
description: <strong>Tilt Series Date:</strong> 2015-07-31</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Schizosaccharomyces pombe</p>
<strong>Strain:</strong> cdc25-22 rlc1-3GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-27/rawdata/</p>073105_pombe_cryosection_grid3_hole7_tomo0001.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        073105_pombe_cryosection_grid3_hole7_tomo0001.rec,  Reconstruction (Pixel Size 2.0 nm), 890.9 MB  
        
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DOI: 10.57830/2314098
title: Fen Inventory at Grand Teton National Park and John D. Rockefeller Jr Parkway 2023 - Open Format Dataset

description: Little is known about fens in Grand Teton National Park (GRTE) and John D. Rockefeller, Jr. Memorial Parkway (JODR). To better manage fen resources in GRTE and JODR, the National Park Service funded the Colorado Natural Heritage Program to create a map of potential fens within GRTE and JODR, visit potential fen polygons to verify their status as fens, and survey for rare fen-indicator plant species. Potential fens were mapped in the winter of 2022-23. The initial map of fens contained 906 potential fens covering 5,208 acres. Field sampling took place in the summer of 2023 and verified 41 fens and 28 peat-accumulating wetlands. Field sampling also confirmed that 48 polygons were not fens. The revised map contained 1,016 acres of confirmed or highly likely fens, which were concentrated at elevations below 2100 m in specific areas of the parks, including Lower Jackson Lake watershed and most of JODR. One hundred and twenty-seven populations of 23 rare fen-indicator plant species were observed either within or near confirmed fens. Rapid vegetation surveys were conducted in 38 confirmed fens. Most fens were characterized as rich fens, with some considered poor fens and no sites meeting the water chemistry and vegetation classification of extreme rich fen. GRTE and JODR fens are exceptional resources that support numerous rare species. Management plans for the park units should protect and avoid impacting these special habitats and their species so they remain intact into the future.