cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17159765
title: 2bRAD-M figure data

description: Source data for Fig. S10 (Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M)
DOI: 10.6084/m9.figshare.17159765.v1
title: 2bRAD-M figure data

description: Source data for Fig. S10 (Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M)
DOI: 10.17632/x2bg8w43gc.1
title: Sustainability Practices in Dairy

description: The data was gathered from a primary survey carried out among dairy farmers in Malaysia. The data comprises demographics of respondents (i.e., age, gender, farming status) and sustainability practices
DOI: 10.17632/stkrjf7w7t.1
title: TPM RNA-seq data of HCC xenograft tissues treated with or without nitidine chloride

description: In recent times, traditional Chinese medicine has gained popularity in the clinical management of human cancers due to its anti-tumor pharmacological action, synergism with chemotherapy and toxity-reducing effect. Nitidine chloride (NC) is a natural alkaloid extracted from the root of traditional Chinese herb Zanthoxylum nitidum and we have previously discovered the tumor-combating activities of NC in HCC. It would be interesting to analyze the influence of NC on expression profiles of genes in HCC. Herein, in vivo experiment was carried out on nude mice for evaluating changes in gene expression profiles from xenograft of HCC tissues before and after the treatment of NC. The animal experiments were performed according to the Guide for the Care and Use of Laboratory Animals (the Shanghai SLAC Laboratory Animal of China, 2015) and were approved by the Ethics Committee of the First Affiliated Hospital of Guangxi Medical University (Nanning, China). BALB/c nude mice were purchased from Guangxi Medical University Animal Center (Guangxi, China). The mice were housed in pathogen-free conditions with a 12 h light/12 h dark cycle at room temperature. SMMC7721 cells (1 × 107 cells/L) were injected into the right armpit of each mouse. Fourteen days later, mice with a tumour volume of approximately 70 mm3 were randomized into two groups: The negative control group containing three mice was intraperitoneally injected with saline, and the NC group containing three mice was intraperitoneally injected with 7 mg/kg/d NC. After 15 days of drug administration every other day, the mice were euthanized and the tumour tissues were excised and stored at -80℃. MRNA-sequencing was conducted following the procedures of NEB Next® UltraTM Directional RNA Library Prep Kit for Illumina® (NEB, USA).
DOI: 10.6084/m9.figshare.17161001
title: November 2021 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>November, 2021</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.17161001.v1
title: November 2021 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>November, 2021</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.17632/79nmyyv99z.2
title: Establishment of a Human iPSC Reporter-Based Developmental Toxicity Assay that Detects FGF Signal Disruption

description: The number of man-made chemicals has increased exponentially in recent decades, and some of them induce fetal malformations. Because complex and precisely programmed signaling pathways play important roles in developmental processes, their disruption by external chemicals often triggers developmental toxicity. However, highly accurate and high-throughput screening assays for potential developmental toxicants are currently lacking. In this study, we propose a reporter assay that utilizes human induced pluripotent stem cells (iPSCs) to detect changes in fibroblast growth factor signaling, which is essential for limb morphogenesis. The dynamics of this signaling after an exposure to a chemical were integrated to estimate the degree of signaling disruption, which afforded a good prediction of the capacity of chemicals listed in the ECVAM International Validation Study that induce limb malformations. This is our initial report about a human iPSC-based signaling disruption assay, which could be useful for the screening of potential developmental toxicants.
DOI: 10.17632/rtd94h6m4k.1
title: Firestations in Bucharest and Ilfov (Romania)

description: You can find here a list of firestations in Bucharest city and Ilfov county (Romania), according to official data, geocoded and manually verified. Although we tried to make it as precise as we can, we don't guarantee that all attributes are accurrate so we don't decline any responsability in using this dataset as an authoritive data source.
This dataset has been compiled and used in various studies:
- Toma-Danila D., Tiganescu A., D’Ayala D., Sun L., Armas I. (in review; 2022?) Time-dependent framework for analyzing emergency intervention travel times and risk implications due to earthquakes. Bucharest case study. Frontiers in Earth Science (please use this as main citation when available, given that is significantly different than previous versions)
- Toma-Danila D., Armas I., Tiganescu A. (2020) Network-risk: an open GIS toolbox for estimating the implications of transportation network damage due to natural hazards, tested for Bucharest, Romania. Natural Hazards and Earth System Sciences, 20(5):1421-1439, doi: 10.5194/nhess-20-1421-2020 
- Toma-Danila D. (2018) A GIS framework for evaluating the implications of urban road network failure due to earthquakes: Bucharest (Romania) case study. Natural Hazards, 93, 97-111.
DOI: 10.17632/xjnfznx89z.1
title: Raw dataset of physicochemical parameters, anion concentration and average metabolic rate of raw soil, Phosphogypsum contaminated soil and nutrient amended Phosphogypsum contaminated soil

description: This dataset describes the raw data of physicochemical parameters (pH, conductivity, ORP, TDS), anion concentration (sulphate, phosphate, fluoride, chloride) and average metabolic rate (AMR) of raw soil, Phosphogypsum contaminated soil and nutrient amended Phosphogypsum contaminated soil.
DOI: 10.17632/b6mfpp6v7w.1
title: Hospitals in Bucharest and Ilfov (Romania)

description: You can find here a list of hospitals in Bucharest city and Ilfov county (Romania), according to free data, joined and post-processed. Although we tried to make it as precise as we can, given the limitations of public datasets we don't guarantee that all attributes are accurrate so we don't decline any responsability in using this dataset as an authoritive data source, especially since subjective classifications of importance or seismic vulnerability are included.
This dataset has been compiled and used in various studies:
- Toma-Danila D., Tiganescu A., D’Ayala D., Sun L., Armas I. (in review; 2022?) Time-dependent framework for analyzing emergency intervention travel times and risk implications due to earthquakes. Bucharest case study. Frontiers in Earth Science (please use this as main citation when available, given that is significantly different than previous versions)
- Toma-Danila D., Armas I., Tiganescu A. (2020) Network-risk: an open GIS toolbox for estimating the implications of transportation network damage due to natural hazards, tested for Bucharest, Romania. Natural Hazards and Earth System Sciences, 20(5):1421-1439, doi: 10.5194/nhess-20-1421-2020 
- Toma-Danila D. (2018) A GIS framework for evaluating the implications of urban road network failure due to earthquakes: Bucharest (Romania) case study. Natural Hazards, 93, 97-111.
DOI: 10.17632/r6zdwc6tfn.1
title: TReSpire  (Mechanistic drivers of stem respiration: a modelling exercise across species and seasons))

description: Please refer to the corresponding paper (Mechanistic drivers of stem respiration: a modelling exercise across species and seasons)
DOI: 10.17632/r62z95vzn8.1
title: Fate of calcareous nannofossils during the Rhaetian (Late Triassic): Evidence from the Northern Calcareous Alps (Austria)

description: Quantification data of the Rhaetian at the Zlambach section (Northern Calcareous Alp, Austria).
DOI: 10.17632/yxn9bjzwn6.1
title: Data for "Modeling sediment trapping and re-erosion in vegetative filter strips on sloping surfaces"

description: The dataset includes the simulated and observed data for "Modeling sediment trapping and re-erosion in vegetative filter strips on sloping surfaces".
DOI: 10.17632/np2fx99hn6.1
title: GutierrezBarragan_CB2021_awake_rsfMRI_mouse

description: Resting state fMRI data from n=10 awake mice from Gutierrez-Barragan et al. 2021  (DOI pending). Scans were acquired at the IIT laboratory in Rovereto (Italy) on a 7.0 Tesla MRI scanner (Bruker Biospin, Ettlingen) with a BGA-9 gradient set, a 72 mm birdcage transmit coil, and a four-channel  solenoid receive coil. Awake scans used a single-shot echo planar imaging (EPI) sequence with the following parameters: TR/TE=1000/15 ms, flip angle=60°, matrix=100 x 100, FOV=2.3 x 2.3 cm, 18 coronal slices (voxel-size 230 x 230 x 600 µm), slice thickness=600 µm and 1920 time points, for a total time of 32 minutes.  It is suggested to remove the first 120 scans (2 minutes) to account for thermal gradient equilibration.
DOI: 10.17632/w67kj92nxx.1
title: Supplementary data  for https://doi.org/10.1016/j.jenvman.2020.111252 

description: Thermoacidophilic effective microbes (tEM) were used to enhance the composting process of lignocellulosic waste. Composting with tEM slightly reduced NH3 emission during the composting process while CH4, and CO2 patterns positively correspond to the rate of composting, with higher emissions in tEM treatment during 60d – 90d composting. Compost microbial evolution based metagenomic DNA sequencing and culture-based microbial enumeration indicate higher abundance and diversity of microbes in tEM treated groups especially at thermophilic temperatures. Chemical analysis showed higher rate of mineralization in tEM treated compost compared to control group while the heavy metal content was below the international threshold levels in both treatment and control. Moreover, germination index (Gi) and global germination index (GI) were higher in tEM treated compost compared to control group. The data is important for evaluating composting efficiency and quality of the final compost product.
DOI: 10.17632/492ydjywwk.1
title: SITUATIONAL AWARENESS NAVIGATING THE POSTNORMAL—E-GOVERNMENT TEXT MINING

description: 1) COVID-9 comment data on Wuhan City message board.
2) The data is crawled using Python. The collection URL is http://liuyan.cjn.cn/. The collection date is October 27th, 2021.
3) Firstly, the search was performed using the Chinese character "疫情" as a keyword. Secondly, "View Details" was clicked on each message to go to the secondary page. Thirdly, strings of "title," "inquiry code," "user ID," "message time," "civic message content," "government response time," and "government response content" were crawled under the secondary pages. Besides, each message matches a unique query code, which can filter for duplicate values after crawling the messages. Finally, a total of 13598 no-repeat messages (3490054 Chinese characters) have been collected.
DOI: 10.17632/ypdrsvygxg.5
title: Luke Barlow et al. 2021 - LSF Raw Data

description: Laser-Stimulated Fluorescence (LSF) has seen increased use in palaeontological investigations in recent years. The method uses the high flux of laser light of visible wavelengths to reveal details sometimes missed by traditional long-wave ultraviolet (UV) methods using a lamp. In this study, we compare the results of LSF with UV-A generated fluorescence on a range of fossils from the Upper Jurassic Solnhofen Limestones Konservat-Lagerstätte of Bavaria, Germany. The methodology follows previous protocols of LSF with modifications made to enhance laser beam intensity, namely keeping the laser at a constant distance from the specimen, using a camera track. Our experiments show that along with making surface details more vivid than UV-A or revealing them for the first time, LSF has the additional value of revealing shallow subsurface specimen detail. Fossil decapods from the Solnhofen Limestone reveal full body outlines, even under the matrix, along with details of segmentation within the appendages such as limbs and antennae. The results indicate that LSF can be used on invertebrate fossils along with vertebrates and may often surpass the information provided by traditional UV methods. Raw data from both track-based and tripod-based LSF can be found below.
DOI: 10.34740/kaggle/dsv/2912170
title: The Complete List of .gov Domains
DOI: 10.5281/zenodo.5773023
title: Basis sets for the 1s2 ground states of two-electron rare gas ions

description: This file contains the exponents of Gaussian basis functions optimized in the Dirac-Coulomb approximation for the two-electron ions of the rare gases, He, Ne, Ar, Kr, Rn, and Og. The basis sets are of double-zeta (2z) to septuple-zeta (7z) quality, and include correlating sets:1p (2z), 2p1d (3z), 3p2d1f (4z), 4p3d2f1g (5g), 5p4d3f2g1h (6z), and 6p5d4f3g2h1i (7z). The basis sets are included with the DIRAC program.
description: {"references": ["A. Almoukhalalati, S. Knecht, H. J. Aa. Jensen, K. G. Dyall and T. Saue, Electron correlation within the relativistic no-pair approximation. J. Chem. Phys. 145, 074104 (2016)."]}
DOI: 10.5281/zenodo.5773022
title: Basis sets for the 1s2 ground states of two-electron rare gas ions

description: This file contains the exponents of Gaussian basis functions optimized in the Dirac-Coulomb approximation for the two-electron ions of the rare gases, He, Ne, Ar, Kr, Rn, and Og. The basis sets are of double-zeta (2z) to septuple-zeta (7z) quality, and include correlating sets:1p (2z), 2p1d (3z), 3p2d1f (4z), 4p3d2f1g (5g), 5p4d3f2g1h (6z), and 6p5d4f3g2h1i (7z). The basis sets are included with the DIRAC program.
description: {"references": ["A. Almoukhalalati, S. Knecht, H. J. Aa. Jensen, K. G. Dyall and T. Saue, Electron correlation within the relativistic no-pair approximation. J. Chem. Phys. 145, 074104 (2016)."]}
DOI: 10.17632/hr6mszn32n.1
title: Personality dysfunction, resilience and caregiving stress

description: The database contains:
- socio-demographic information for 224 informal caregivers of children and adults with developmental disabilities;
-scores on personality dysfunction as conceptualized by the alternative model of personality dysfunction in the DSM-5;
-scores on trait resilience and caregiving stress.
The aim of the study underlying this data is to investigate the moderating role of trait resilience on the relationship between personality dysfunction and caregiving stress.
DOI: 10.17632/dw7syw7tt7.1
title: Online data for: Genomic insights in Ascending Aortic Size and Distensibility

description: This dataset contains online supplementary data for our paper 'Genomic insights in Ascending Aortic Size and Distensibility'. 
Please contact us, should there be any questions regarding this data.
DOI: 10.15468/b3awrh
title: Quiina maracaensis J. V. Schneid. & Zizka and Quiina zamorensis J. V. Schneid. & Zizka (Quiinaceae), two new species of Quiina Aubl. from the Neotropics

description: This dataset contains the digitized treatments in Plazi based on the original journal article Schneider, Julio V., Zizka, Georg (2012): Quiina maracaensis J. V. Schneid. & Zizka and Quiina zamorensis J. V. Schneid. & Zizka (Quiinaceae), two new species of Quiina Aubl. from the Neotropics. Candollea 67 (2): 261-267, DOI: 10.15553/c2012v672a7
DOI: 10.17632/gxbx87bg77.1
title: URF_BC patterns

description: Recombination patterns of HIV-1 BC samples classified as URFs used in frequency data of study: GENOMIC CHARACTERIZATION OF HIV-1 BC RECOMBINANT VIRUSES. Oliveira, R. C. and Monteiro-Cunha, J. P. (2021).
The mosaics were generated by JphMM online tool
DOI: 10.17632/7h3k4pgjvr.1
title: Anterior cingulate neurons signal neutral cue pairings during sensory preconditioning 

description: Hart et al. Anterior cingulate recordings during sensory preconditioning
DOI: 10.17632/cstdcfkwm2.1
title: Molecular Study of Escherichia albertii in Pediatric Urinary Tract Infections

description: SPPS data
DOI: 10.17632/s3djdhrvv6.1
title: Allergic diseases in Puebla City

description: An observational, cross-sectional, descriptive, and retrospective study was carried out. The records of patients who underwent a skin prick test with 45 aeroallergens in an allergic disease clinic at "Hospital Ángeles Puebla", in the period from January 2016 to August 2021, were reviewed individually. Pediatric and adult patients were included. All tests were executed and interpreted by a pediatric allergist and immunologist. We aimed to describe the sensitization pattern in a Mexican population with allergic conjunctivitis in the last five years. We included age, sex, patient allergic disease (asthma, rhinitis, conjunctivitis, dermatitis and urticaria) and the aeroallergen to which the patient was sensitized, in case the skin prick test was negative the presumptive diagnosis was recorded in a separate column.
DOI: 10.17632/fc3dd2hp8b.1
title: COVID-19 lifestyle data

description: The dataset was gathered from a survey conducted using a google form with 25 questions anonymously and 620 responses were received.
DOI: 10.17632/g36dhg826s.1
title: Proximate_Analysis

description: This database studies the performance inconsistency on the biomass HHV proximate analysis. The research null hypothesis is the consistency in the rank of a biomass HHV model. Fifteen biomass models are trained and tested in four datasets. In each dataset, the rank invariability of these 15 models indicates the performance consistency. 

The database includes the datasets and source codes to analyze the performance consistency of the biomass HHV. These datasets are stored in tabular on an excel workbook. The source codes are the biomass HHV machine learning model through the MATLAB Objected Orient Program (OOP). These models consist of eight regressions, four supervised learnings, and three neural networks.

An excel workbook, "BiomassDataSetProximate.xlsx," collects the research datasets in six worksheets. The first worksheet, "Proximate," contains 803 HHV data from 17 pieces of literature. The names of the worksheet column indicate the elements of the proximate analysis on a % dry basis. The HHV column refers to the higher heating value in MJ/kg. The following worksheet, "Full Residuals," backups the model testing's residuals based on the 20-fold cross-validations. The article verifies the performance consistency through these residuals. The other worksheets present the literature datasets implemented to train and test the model performance in many pieces of literature.

A file named "SourceCodeProximate.rar" collects the MATLAB machine learning models implemented in the article. The list of the folders in this file is the class structure of the machine learning models. These classes extend the features of the original MATLAB's Statistics and Machine Learning Toolbox to support, e.g., the k-fold cross-validation. The MATLAB script, "runStudyProximate.m," is the article's main program (Kijkarncharoensin & Innet, 2021) to analyze the performance consistency of the biomass HHV model through the proximate analysis. The script instantly loads the datasets from the excel workbook and automatically fits the biomass model through the OOP classes.

The first section of the MATLAB script generates the most accurate model by optimizing the model's higher parameters. It takes a few hours for the first run to train the machine learning model via the trial and error process. The trained models can be saved in MATLAB .mat file and loaded back to the MATLAB workspace. The remaining script, separated by the script section break, performs the residual analysis to inspect the performance consistency. Furthermore, the figure of the biomass data in the 3D scatter plot, and the box plots of the prediction residuals are exhibited. Finally, the interpretations of these results are examined in the author's article.

Reference :
Kijkarncharoensin, A., & Innet, S. (2021). The Performance Inconsistency of the Biomass Higher Heating Value (HHV) Models: The Proximate Analysis [Manuscript in preparation]. University of the Thai Chamber of Commerce.
DOI: 10.17632/hgjrc8yr82.1
title: Weight Loss Data for Morbidly Obese Patients With Heart Failure Following Siddha Fasting

description: Data illustrating weight loss (kg) and characteristics of 10 morbidly obese patients with heart failure who participated in Siddha Fasting. Data was gathered by clinic staff during routine follow up appointments. All participants achieved at least 10% weight loss. 

Siddha recommends fasting to reduce cardiac work load. Emotional and habitual eating is minimized and people learn to recognize hunger as a physiological and welcome sign of health. This practice intuitively deepens the mind-body understanding and transforms the relationship with eating.