cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6hqzjc
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xyloryctes faunus Casey, 1895"
 ]
}

 The dataset includes 42 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181893-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.px8hrq
title: Occurrence Download

description: A dataset containing 18414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aquilegia atrata Koch)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18414 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051786-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbma3z
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.13050 -62.04163,18.13050 -62.04163,18.13050 -13.95837,-102.13050 -13.95837,-102.13050 -62.04163))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euglossa annectans Dressler, 1982"
 ]
}

 The dataset includes 105 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295812-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eezgbk
title: Occurrence Download

description: A dataset containing 4875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Kenya Virtual Museum Records"
 ]
}

 The dataset includes 4875 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008431-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2fxat
title: Occurrence Download

description: A dataset containing 608833 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Impatiens L."
 ]
}

 The dataset includes 608833 records from 1251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276680-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.euwxdr
title: Occurrence Download

description: A dataset containing 9966 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides tuberosa (L.) Moench"
 ]
}

 The dataset includes 9966 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075103-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mgs7t
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia chrysotricha Ridl."
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075106-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tj565y
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleioluma azou (P.Royen) Swenson & Munzinger"
 ]
}

 The dataset includes 20 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075107-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqx86u
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella renifolia H.Wolff"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075108-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/1992
title: afghanwire
DOI: 10.15468/dl.pyvaeq
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus virgulatus Müll.Arg."
 ]
}

 The dataset includes 84 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075109-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2nbn3
title: Occurrence Download

description: A dataset containing 617 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Planchonella myrsinodendron (F.Muell.) Swenson, Bartish & Munzinger"
 ]
}

 The dataset includes 617 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075110-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvyv9n
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia cinnamomea Hook.f. & Thomson"
 ]
}

 The dataset includes 116 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075111-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umz9xn
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleioluma balansana (Pierre ex Baill.) Swenson & Munzinger"
 ]
}

 The dataset includes 118 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075112-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbz35h
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella rhodantha Boiss."
 ]
}

 The dataset includes 334 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075113-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2jync
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus virgultiramus Däniker"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075115-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wn5bhx
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides tuvinica (A.Schroet.) Kamelin, Adylov & Makhm."
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075116-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eh26du
title: Occurrence Download

description: A dataset containing 37509 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monochamus Guérin, 1826"
 ]
}

 The dataset includes 37509 records from 481 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075114-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqryjh
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Planchonella nebulicola H.J.Lam"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075117-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2x38ak
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia clemensiorum Jovet-Ast"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075118-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a85yhv
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleioluma baueri (Montrouz.) Swenson & Munzinger"
 ]
}

 The dataset includes 271 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075119-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25041248.v1
title: Data and code for "<b>Fencing promotes foliar fungal diseases in more harsh areas via dramatically decreasing plant species richness</b>"

description: Data and code for "<b>Fencing promotes foliar fungal diseases in more harsh areas via dramatically decreasing plant species richness</b>"
DOI: 10.15468/dl.364jvg
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus volkensii Engl."
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075120-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu4js4
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimpinella rhomboidea Diels"
 ]
}

 The dataset includes 172 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075121-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pxx58
title: Occurrence Download

description: A dataset containing 2668 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides umbrosa (Turcz.) Kamelin & Makhm."
 ]
}

 The dataset includes 2668 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075122-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ubke2
title: Occurrence Download

description: A dataset containing 8568 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus subterraneus (Linnaeus, 1758)"
 ]
}

 The dataset includes 8568 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075123-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjtefy
title: Occurrence Download

description: A dataset containing 3190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Planchonella obovata (R.Br.) Pierre"
 ]
}

 The dataset includes 3190 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075124-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2jdbh
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polyalthia corticosa (Pierre) Finet & Gagnep."
 ]
}

 The dataset includes 34 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075125-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnynqu
title: Occurrence Download

description: A dataset containing 68953910 species occurrences available in GBIF matching the query:
{
 "Continent" : [
 "is Africa"
 ]
}

 The dataset includes 68953910 records from 6241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075084-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13265793
title: Additional file 9 of Tissue-specific Transcriptome analysis reveals lignocellulose synthesis regulation in elephant grass (Pennisetum purpureum Schum)

description: Additional file 9: Table S4. The expression level and functional annotation of 43 genes in WGCNA during T3 period and the correlation coefficient with lignin or cellulose synthesis.
DOI: 10.6084/m9.figshare.13265793.v1
title: Additional file 9 of Tissue-specific Transcriptome analysis reveals lignocellulose synthesis regulation in elephant grass (Pennisetum purpureum Schum)

description: Additional file 9: Table S4. The expression level and functional annotation of 43 genes in WGCNA during T3 period and the correlation coefficient with lignin or cellulose synthesis.
DOI: 10.6084/m9.figshare.16935780.v1
title: Additional file 9 of High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height

description: Additional file 9: Table S8. Gene function annotation statistics.
DOI: 10.6084/m9.figshare.13265865
title: Additional file 3 of Phylogenetic analysis and clinical characteristics of the co-occurring mutations in HA and NA genes of influenza A(H1N1)pdm09 viruses during 2015–2017 in Beijing, China

description: Additional file 3: Table 3. Nucleotide similarity of NA genes compared to vaccine strains.
DOI: 10.6084/m9.figshare.16935774.v1
title: Additional file 7 of High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height

description: Additional file 7: Table S6. Evaluation of assembly completeness with respect to genespace using BUSCO.
DOI: 10.6084/m9.figshare.14724655.v1
title: Supplementary Files S5 Output of the WhatGene pipeline for paradise crow, chicken, zebra finch and emu. from The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities

description: It is a broadly observed pattern that the non-recombining regions of sex-limited chromosomes (Y and W) accumulate more repeats than the rest of the genome, even in species like birds with a low genome-wide repeat content. Here, we show that in birds with highly heteromorphic sex chromosomes, the W chromosome has a transposable element (TE) density of greater than 55% compared to the genome-wide density of less than 10%, and contains over half of all full-length (thus potentially active) endogenous retroviruses (ERVs) of the entire genome. Using RNA-seq and protein mass spectrometry data, we were able to detect signatures of female-specific ERV expression. We hypothesize that the avian W chromosome acts as a refugium for active ERVs, likely leading to female-biased mutational load that may influence female physiology similar to the ‘toxic-Y’ effect in <i>Drosophila</i>. Furthermore, Haldane's rule predicts that the heterogametic sex has reduced fertility in hybrids. We propose that the excess of W-linked active ERVs over the rest of the genome may be an additional explanatory variable for Haldane's rule, with consequences for genetic incompatibilities between species through TE/repressor mismatches in hybrids. Together, our results suggest that the sequence content of female-specific W chromosomes can have effects far beyond sex determination and gene dosage.This article is part of the theme issue ‘Challenging the paradigm in sex chromosome evolution: empirical and theoretical insights with a focus on vertebrates (Part II)’.
DOI: 10.5281/zenodo.10642282
title: IODP Expedition 390C Magnetic susceptibility (whole round)

description: Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C loop. As volume of the sample is not controlled for this experiment, susceptibility units are recorded in instrument units and are not volume-corrected.
DOI: 10.5281/zenodo.10642283
title: IODP Expedition 390C Magnetic susceptibility (whole round)

description: Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C loop. As volume of the sample is not controlled for this experiment, susceptibility units are recorded in instrument units and are not volume-corrected.
DOI: 10.6084/m9.figshare.22183411
title: DOPAMINE RECEPTOR D4R DOWN-REGULATES SODIUM CHLORIDE COTRANSPORTER IN RENAL DISTAL CONVOLUTED TUBULES VIA UBIQUITINATION-ASSOCIATED LYSOSOME DEGRADATION

description: uncropped western blot, immunofluorescence and raw data of figure1, figure2, figure3, figure4, figure5, figure7, figure8
DOI: 10.6084/m9.figshare.13794968
title: Raw data for No higher infectivity but immune escape of SARS-CoV-2 501Y.V2 variants

description: The 501Y.V2 variants of SARS-CoV-2 containing multiple mutations in the spike region spread over many countries. Whether their biological characteristics including infectivity and antigenicity have been altered was not clear. In present study, we found that they had no significant increased effect on infectivity to human cell lines and cells overexpressing human ACE2, but increased infectivity in cells overexpressing mouse ACE2 based on the pseudotyped viruses comparing to 614G variant. The susceptibility of 501Y.V2 variants to many neutralizing monoclonal antibodies decreased significantly. These variants also had a significantly reduced effect on the neutralization ability of convalescent and RBD immunized sera. The immune resistances were mainly caused by E484K and N501Y mutations located in RBD. These data suggest that the enhancement of infectivity in mouse cells may lead to the spillover of 501Y.V2 to mouse. The immune resistance of 501Y.V2 may compromise the efficacy of monoclonal antibodies, convalescent sera and vaccines.
DOI: 10.6084/m9.figshare.11697897
title: Transcriptomic investigation of the basis of Corona and petal colour in Chinese narcissus

description: Chinese narcissus is a traditional flower with gorgeous corona and petal colour. The carotenoid biosynthesis pathway is primarily responsible for colour formation in narcissus flower. However, the role of carotenoid biosynthesis enzymes and intermediates in colour development, and the molecular basis of differences between orange-yellow corona and milky-white petals are unclear. Here, we performed RNA-Seq using Illumina HiSeq platform and <i>de novo</i> transcriptome assembly to predict the functions of the identified significantly differentially expressed genes (DEGs). We investigated genes expression in narcissus corona and petal tissues on the first and seventh day of flowering. 14 colour -related genes were further analysed by qRT-PCR. The significantly DEGs encoded various kinds of enzymes and transcription factors (TFs) associated with carotenoid and flavonoid biosynthesis pathways, respectively. These DEGs mainly included <i>phytoene synthase</i> <i>(</i><i>PSY</i><i>)</i> gene, <i>lycopene epsilon cyclase</i> <i>(</i><i>LCYE</i><i>)</i> gene, β-<i>carotene hydroxylase</i> <i>(</i><i>BCH</i><i>)</i> gene, β-<i>carotene isomerase</i> gene and AP2/ ERF, B3, MYB, NAC and WRKY TFs. Additionally, an in-depth analysis of chlorophyll biosynthesis and degradation pathways was performed. These results enhance our understanding of the mechanism of colour formation in narcissus flower and provide a basis for further investigation of the functions of proteins encoded by the annotated unigenes and cDNA sequences of narcissus.
DOI: 10.6084/m9.figshare.11697897.v1
title: Transcriptomic investigation of the basis of Corona and petal colour in Chinese narcissus

description: Chinese narcissus is a traditional flower with gorgeous corona and petal colour. The carotenoid biosynthesis pathway is primarily responsible for colour formation in narcissus flower. However, the role of carotenoid biosynthesis enzymes and intermediates in colour development, and the molecular basis of differences between orange-yellow corona and milky-white petals are unclear. Here, we performed RNA-Seq using Illumina HiSeq platform and <i>de novo</i> transcriptome assembly to predict the functions of the identified significantly differentially expressed genes (DEGs). We investigated genes expression in narcissus corona and petal tissues on the first and seventh day of flowering. 14 colour -related genes were further analysed by qRT-PCR. The significantly DEGs encoded various kinds of enzymes and transcription factors (TFs) associated with carotenoid and flavonoid biosynthesis pathways, respectively. These DEGs mainly included <i>phytoene synthase</i> <i>(</i><i>PSY</i><i>)</i> gene, <i>lycopene epsilon cyclase</i> <i>(</i><i>LCYE</i><i>)</i> gene, β-<i>carotene hydroxylase</i> <i>(</i><i>BCH</i><i>)</i> gene, β-<i>carotene isomerase</i> gene and AP2/ ERF, B3, MYB, NAC and WRKY TFs. Additionally, an in-depth analysis of chlorophyll biosynthesis and degradation pathways was performed. These results enhance our understanding of the mechanism of colour formation in narcissus flower and provide a basis for further investigation of the functions of proteins encoded by the annotated unigenes and cDNA sequences of narcissus.