cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jfmibt
title: Occurrence Download

description: A dataset containing 34113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Drosera anglica Huds.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 34113 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004705-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uctxyv
title: Occurrence Download

description: A dataset listing the 782 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is BirdLife Australia, Birdata"
 ]
}

 The dataset's 782 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002957-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7hytb
title: Occurrence Download

description: A dataset containing 891 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tuta absoluta (Meyrick, 1917)"
 ]
}

 The dataset includes 891 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057329-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmme4b
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-77.28676 3.85603,-77.18582 4.05606,-77.22771 4.08208,-77.48177 4.03003,-77.58408 3.85877,-77.46323 3.68611,-77.28676 3.85603))",
 "HasCoordinate is true",
 "TaxonKey is Malacostraca",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 360 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079994-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b46ug5
title: Occurrence Download

description: A dataset containing 6658 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nestor notabilis Gould, 1856"
 ]
}

 The dataset includes 6658 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337652-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qytg8b
title: Occurrence Download

description: A dataset containing 830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present",
 "TaxonKey is Rattus rattus (Linnaeus, 1758)"
 ]
}

 The dataset includes 830 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077548-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvpyq3
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.86035 -56.7334,-64.37988 -56.7334,-64.37988 -44.16504,-76.86035 -44.16504,-76.86035 -56.7334))",
 "HasCoordinate is true",
 "TaxonKey is Orcinus orca (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080018-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5s7bmj
title: Occurrence Download

description: A dataset listing the 106 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Country is one of (Colombia)",
 "StateProvince is one of (norte de santander)",
 "Locality is one of (cúcuta)"
 ]
 }
 ]
}

 The dataset's 106 records were derived from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078610-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ba5ef
title: Occurrence Download

description: A dataset containing 3592 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kobus ellipsiprymnus (Ogilby, 1833)"
 ]
}

 The dataset includes 3592 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014209-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4x5xm
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pimelodella procera Mees, 1983"
 ]
}

 The dataset includes 27 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077549-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38rn9p
title: Occurrence Download

description: A dataset containing 233274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 {
 "or" : [
 "Month is June",
 "Month is July",
 "Month is August"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 233274 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0361959-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyr75p
title: Occurrence Download

description: A dataset containing 419063 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insect Species Occurrence Data from Multiple Projects Worldwide with Focus on Bees and Wasps in North America"
 ]
}

 The dataset includes 419063 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077554-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcjyue
title: Occurrence Download

description: A dataset containing 127339 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sedum album L."
 ]
}

 The dataset includes 127339 records from 496 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020381-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sf9j9d
title: Occurrence Download

description: A dataset containing 947 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muhlenbergia porteri Scribn. ex Beal"
 ]
}

 The dataset includes 947 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413555-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfbod3
title: Occurrence Download

description: A dataset containing 176170 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen"
 ]
}

 The dataset includes 176170 records from 457 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005929-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15040115
title: Geographic range and body size influence abundance patterns in reef fishes
DOI: 10.15468/dl.m87cgq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mycosphaerella mikaniae-micranthae R.W.Barreto"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008515-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27093955
title: Suporting information for Rodríguez-Pastor et al. 2025: Dataset and R codes

description: Suporting information for Rodríguez-Pastor et al. 2025: Dataset and R codes
DOI: 10.23668/psycharchives.15430
title: Dataset for: The Creative Awareness Theory: A grounded theory study of inherent self-regulation in attention deficit-hyperactivity disorder

description: Objectives: The aim of this study was to determine why and how adults with attention deficit hyperactivity disorder (ADHD) experience variable impairment and identify the processes and strategies adults with ADHD use to develop positive self-regulation skills. Methods: A mixed cohort of 11 participants (6 female and 5 male) from a university, an adult ADHD clinic and an ADHD support group in the UK were interviewed online between September 2021 and February 2022. Data were collected and analysed simultaneously, inspired by constructivist grounded theory methodology. Results: Participants described a “polar awareness of difference” from others in terms of engagement and ADHD characteristics, and a “polar awareness of consciousness” experienced as the states of chaotic attention and hyperfocus, both of which impact core perceptions of self. Using an infinity paradigm, the results demonstrate unskilled attempts to self-regulate within and between these states using self-absorption or self-transcendence strategies including their inherent challenges and energetic cost. Our results further indicate that at the centre of this dynamic paradigm creative awareness strategies exist, which exemplify polarity awareness and the regulation of that awareness supported by an authentic inner compass (AIC). Conclusions: This paper presents the empirical foundation for the ADHD Creative Awareness Theory (CAT) – a new theory for understanding the experience of ADHD consciousness and environmental engagement. Practice implications are explored, and recommendations include use of the CAT as a framework for understanding and development of inherent self-regulation skills for adults with ADHD.
DOI: 10.6084/m9.figshare.28077118
title: Impact of excess sugar on the whole genome DNA methylation pattern in human sperm

description: Dietary factors may regulate the epigenome. We aimed to explore whether a diet intervention, including excess sugar, affects the methylome in human sperm, and to describe the sperm methylome. We used Whole Genome Bisulfite Sequencing (WGBS) to analyze DNA methylation in sperm taken at three time points from 15 males during a diet intervention; i) at baseline, ii) after one week on a standardized diet, and iii) after an additional week on a high-sugar diet providing 150% of their estimated total energy expenditure. We identified seven nominal diet-associated differentially methylated regions in sperm (<i>p</i> &lt; 0.05). The diet was nominally associated with methylation of 143 sites linked to fertility (e.g. <i>AHRR</i>, <i>GNAS</i>, and <i>HDAC4</i>), 313 sites in imprinted genes (e.g. <i>GLIS3</i>, <i>PEG10</i>, <i>PEG3</i>, and <i>SNURF</i>), and 42 sites in top 1%-expressed genes (e.g. <i>CHD2</i>) (<i>p</i> &lt; 0.05). In sperm, 3’UTRs and introns had the highest levels of methylation, while 5’UTRs and CpG islands had the lowest levels. Non-expressed genes in human sperm were hypomethylated in exons compared with transcribed genes. In human sperm, DNA methylation levels were linked to gene expression, and excess sugar had modest effects on methylation on imprinted and highly expressed genes, and genes affecting fertility. Diet can influence the way genes are regulated in the body. Using a method called Whole Genome Bisulfite Sequencing, we examined changes in DNA methylation, which can affect how genes are turned on or off. Our findings showed that, in human sperm, DNA methylation was linked to how genes are expressed. In this study, we also looked more specifically at whether consuming high amounts of sugar could affect DNA methylation levels in human sperm. We found that one week of excess sugar intake had small effects on DNA methylation, also in genes that are important for fertility and in genes that are usually highly active. More research is needed to confirm these findings.
DOI: 10.6084/m9.figshare.28077118.v1
title: Impact of excess sugar on the whole genome DNA methylation pattern in human sperm

description: Dietary factors may regulate the epigenome. We aimed to explore whether a diet intervention, including excess sugar, affects the methylome in human sperm, and to describe the sperm methylome. We used Whole Genome Bisulfite Sequencing (WGBS) to analyze DNA methylation in sperm taken at three time points from 15 males during a diet intervention; i) at baseline, ii) after one week on a standardized diet, and iii) after an additional week on a high-sugar diet providing 150% of their estimated total energy expenditure. We identified seven nominal diet-associated differentially methylated regions in sperm (<i>p</i> &lt; 0.05). The diet was nominally associated with methylation of 143 sites linked to fertility (e.g. <i>AHRR</i>, <i>GNAS</i>, and <i>HDAC4</i>), 313 sites in imprinted genes (e.g. <i>GLIS3</i>, <i>PEG10</i>, <i>PEG3</i>, and <i>SNURF</i>), and 42 sites in top 1%-expressed genes (e.g. <i>CHD2</i>) (<i>p</i> &lt; 0.05). In sperm, 3’UTRs and introns had the highest levels of methylation, while 5’UTRs and CpG islands had the lowest levels. Non-expressed genes in human sperm were hypomethylated in exons compared with transcribed genes. In human sperm, DNA methylation levels were linked to gene expression, and excess sugar had modest effects on methylation on imprinted and highly expressed genes, and genes affecting fertility. Diet can influence the way genes are regulated in the body. Using a method called Whole Genome Bisulfite Sequencing, we examined changes in DNA methylation, which can affect how genes are turned on or off. Our findings showed that, in human sperm, DNA methylation was linked to how genes are expressed. In this study, we also looked more specifically at whether consuming high amounts of sugar could affect DNA methylation levels in human sperm. We found that one week of excess sugar intake had small effects on DNA methylation, also in genes that are important for fertility and in genes that are usually highly active. More research is needed to confirm these findings.
DOI: 10.6084/m9.figshare.28081679
title: Evaluation of agreement between common clustering strategies for DNA methylation-based subtyping of breast tumours

description: Clustering algorithms have been widely applied to tumor DNA methylation datasets to define methylation-based cancer subtypes. This study aimed to evaluate the agreement between subtypes obtained from common clustering strategies, We used tumor DNA methylation data from 409 women with breast cancer from the Melbourne Collaborative Cohort Study (MCCS) and 781 breast tumors from The Cancer Genome Atlas (TCGA). Agreement was assessed using the adjusted Rand index for various combinations of number of CpGs, number of clusters and clustering algorithms (hierarchical, K-means, partitioning around medoids, and recursively partitioned mixture models). Inconsistent agreement patterns were observed for between-algorithm and within-algorithm comparisons, with generally poor to moderate agreement (ARI &lt;0.7). Results were qualitatively similar in the MCCS and TCGA, showing better agreement for moderate number of CpGs and fewer clusters (K = 2). Restricting the analysis to CpGs that were differentially-methylated between tumor and normal tissue did not result in higher agreement. Our study highlights that common clustering strategies involving an arbitrary choice of algorithm, number of clusters and number of methylation sites are likely to identify different DNA methylation-based breast tumor subtypes.
DOI: 10.6084/m9.figshare.28081679.v1
title: Evaluation of agreement between common clustering strategies for DNA methylation-based subtyping of breast tumours

description: Clustering algorithms have been widely applied to tumor DNA methylation datasets to define methylation-based cancer subtypes. This study aimed to evaluate the agreement between subtypes obtained from common clustering strategies, We used tumor DNA methylation data from 409 women with breast cancer from the Melbourne Collaborative Cohort Study (MCCS) and 781 breast tumors from The Cancer Genome Atlas (TCGA). Agreement was assessed using the adjusted Rand index for various combinations of number of CpGs, number of clusters and clustering algorithms (hierarchical, K-means, partitioning around medoids, and recursively partitioned mixture models). Inconsistent agreement patterns were observed for between-algorithm and within-algorithm comparisons, with generally poor to moderate agreement (ARI &lt;0.7). Results were qualitatively similar in the MCCS and TCGA, showing better agreement for moderate number of CpGs and fewer clusters (K = 2). Restricting the analysis to CpGs that were differentially-methylated between tumor and normal tissue did not result in higher agreement. Our study highlights that common clustering strategies involving an arbitrary choice of algorithm, number of clusters and number of methylation sites are likely to identify different DNA methylation-based breast tumor subtypes.
DOI: 10.6084/m9.figshare.28089184
title: PX-12 modulates vorinostat-induced acetylation and methylation marks in CAL 27 cells

description: The hypoxic tumor microenvironment (TME) in oral squamous cell carcinoma (OSCC) is primarily regulated by hypoxia-inducible factor-1 alpha (HIF-1α), impacting histone acetylation and methylation, which contribute to drug resistance. Vorinostat, a histone deacetylase inhibitor (HDACi), de-stabilizes HIF-1α, while PX-12, a thioredoxin-1 (Trx-1) inhibitor, prevents HIF-1α accumulation. Combining HDACi with a Trx-1 inhibitor may enhance efficacy and reduce resistance by increasing reactive oxygen species (ROS) in cancer cells. This study examines how PX-12 influences vorinostat-induced histone modifications under hypoxia in the OSCC cell line CAL 27 using mass spectrometry. The OSCC cell line CAL 27 was used to assess histone post-translational modifications induced by PX-12 and Vorinostat under hypoxic conditions through mass spectrometry. The proteomic analysis (ProteomeXchange identifier PXD053244) revealed several crucial histone marks, such as H3K4me1, H3K9ac, H3K9me, H3K14ac, H3K27me, H3K36me, H4K12Ac, and H4K16ac. Along with site-specific histone modifications, exposure of cells to vorinostat and PX-12 alone or in combination affects the global acetylation and methylation levels under hypoxia. Mass spectrometry-based proteomics highlighted the impact of vorinostat and PX-12 on histone acetylation and methylation, offering valuable insights into the epigenetic mechanisms in OSCC and paving a way for epigenetic-based oral cancer therapeutics.
DOI: 10.6084/m9.figshare.28089184.v1
title: PX-12 modulates vorinostat-induced acetylation and methylation marks in CAL 27 cells

description: The hypoxic tumor microenvironment (TME) in oral squamous cell carcinoma (OSCC) is primarily regulated by hypoxia-inducible factor-1 alpha (HIF-1α), impacting histone acetylation and methylation, which contribute to drug resistance. Vorinostat, a histone deacetylase inhibitor (HDACi), de-stabilizes HIF-1α, while PX-12, a thioredoxin-1 (Trx-1) inhibitor, prevents HIF-1α accumulation. Combining HDACi with a Trx-1 inhibitor may enhance efficacy and reduce resistance by increasing reactive oxygen species (ROS) in cancer cells. This study examines how PX-12 influences vorinostat-induced histone modifications under hypoxia in the OSCC cell line CAL 27 using mass spectrometry. The OSCC cell line CAL 27 was used to assess histone post-translational modifications induced by PX-12 and Vorinostat under hypoxic conditions through mass spectrometry. The proteomic analysis (ProteomeXchange identifier PXD053244) revealed several crucial histone marks, such as H3K4me1, H3K9ac, H3K9me, H3K14ac, H3K27me, H3K36me, H4K12Ac, and H4K16ac. Along with site-specific histone modifications, exposure of cells to vorinostat and PX-12 alone or in combination affects the global acetylation and methylation levels under hypoxia. Mass spectrometry-based proteomics highlighted the impact of vorinostat and PX-12 on histone acetylation and methylation, offering valuable insights into the epigenetic mechanisms in OSCC and paving a way for epigenetic-based oral cancer therapeutics.
DOI: 10.15468/dl.a5bejv
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus cerasus Debeaux"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008516-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nht9be
title: Occurrence Download

description: A dataset containing 99348 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sylvilagus floridanus (J.A.Allen, 1890)"
 ]
}

 The dataset includes 99348 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008513-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dcsdk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Septoria mikaniae-micranthae R.W.Barreto"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008517-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7r3us
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus cerasus Ledeb."
 ]
}

 The dataset includes 29 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008518-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.221328
title: New Zealand emission unit (NZU) monthly prices 2010 to date

description: This data and R code repository provides a reproducible public domain data series of mean monthly spot prices of the New Zealand emission unit (or "NZU"), the domestic emission unit in the New Zealand emissions trading scheme (https://en.wikipedia.org/wiki/New_Zealand_Emissions_Trading_Scheme/). 
description: Includes R programming language script
DOI: 10.15468/dl.zhcb6u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gunnera tinctoria Linden"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008520-250127130748423/datasets/export for details.