cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21814176.v1
title: Supplementary Material for: Association between Kidney Function and the Burden of Cerebral Small Vessel Disease: An Updated Meta-Analysis and Systematic Review

description: <b><i>Introduction:</i></b> Due to anatomical and functional similarities in microvascular beds, the brain and kidney share distinctive susceptibilities to vascular injury and common risk factors of small vessel disease. The aim of this updated meta-analysis is to explore the association between kidney function and the burden of cerebral small vessel disease (CSVD). <b><i>Methods:</i></b> PubMed, EMBASE, and Cochrane Library were systematically searched for observational studies that explored the association between the indicators of kidney function and CSVD neuroimaging markers. The highest-adjusted risk estimates and their 95% confidence intervals (CIs) were aggregated using random-effect models. <b><i>Results:</i></b> Twelve longitudinal studies and 51 cross-sectional studies with 57,030 subjects met the inclusion criteria of systematic review, of which 52 were included in quantitative synthesis. According to the pooled results, we found that low estimated glomerular filtration rate (eGFR &lt;60 mL/min/1.73 m<sup>2</sup>) was associated with cerebral microbleeds (odds ratio (OR) = 1.55, 95% CI = 1.26–1.90), white matter hyperintensities (OR = 1.40, 95% CI = 1.05–1.86), and lacunar infarctions (OR = 1.50, 95% CI = 1.18–1.92), but not with severe perivascular spaces (OR = 1.20, 95% CI = 0.77–1.88). Likewise, patients with proteinuria (OR = 1.75, 95% CI = 1.47–2.09) or elevated serum cystatin C (OR = 1.51, 95% CI = 1.25–1.83) also had an increased risk of CSVD. <b><i>Conclusion:</i></b> The association between kidney function and CSVD has been comprehensively updated through this study, that kidney insufficiency manifested as low eGFR, proteinuria, and elevated serum cystatin C was independently associated with CSVD burden.
DOI: 10.6084/m9.figshare.3517370.v1
title: Appendix E. Area-adjusted frequencies of validation locations within ordinal bins of SRSF-predicted values per scale, population, and season.

description: Area-adjusted frequencies of validation locations within ordinal bins of SRSF-predicted values per scale, population, and season.
DOI: 10.17632/gf7f9zbn57
title: <i>Данные для диссертационного исследования Сергиенко Никита ф622</i>. (n.d.).

description: Russian m and a research
DOI: 10.17632/zrwy6bj4pn
title: Data for Assessing Urban Effects on Precipitation in the Atlanta, GA USA Region - 2014-2023

description: With respect to these data, the Atlanta, GA region is considered to be a circle with a 90-km radius that iscentered on downtown Atlanta. The time period is 2014-2023.

This dataset contains the following data:
1. Information about the 50 precipitation gauges within 90 km of downtown Atlanta for which data are provided;
2. Raw daily precipitation totals for the 50 gauges;
3. Serially complete daily precipitation totals for the 50 gauges;
4. Daily wind direction for the Atlanta region;
5. Cumulative precipitation totals, precipitation days, heavy-precipitation days for the 50 gauges over the ten years;
6. Impervious percentages for wedges that extend from the 50 gauges;
7. Mean percent imperviousness -- weighted by precipitation totals -- upwind from the 50 gauges;
8. Mean percent imperviousness -- weighted by precipitation days -- upwind from the 50 gauges;
9. Mean percent imperviousness -- weighted by heavy-precipitation days -- upwind from the 50 gauges;
10. Control and downwind gauges for the 84 scenarios for each of the precipitation variables (i.e.., precipitation totals, precipitation days, and heavy-precipitation days; and
11. Geospatial data for the precipitation gauges.
DOI: 10.17632/rnkbj5nh8g
title: Education and economic growth

description: Education and economic growth
DOI: 10.17632/frtcbvgg8k
title: Stigma Underlies the Mental Health Burden of Pediatric Atopic Dermatitis: A Cohort Study

description: Background: The role of stigma in childhood atopic dermatitis (AD) has received little attention. 
Objective: To validate a new self-reported tool to measure pediatric stigma and correlate stigma with physical, mental, and social domains of health in pediatric patients with AD. 
Methods: In a cohort study, 180 children with AD 8-17 years old and a parent enrolled and completed the PROMIS Pediatric Stigma (PPS)-Skin questionnaire and other patient- and proxy-reported measures. 
Results: PPS-Skin showed strong construct and convergent validity, as well as responsiveness to changes 6-12 months after enrollment. Stigma scores were strongly correlated with scores for itch and moderately with several other physical and psychosocial markers of health, especially sleep-related impairment, depression, and psychological stress. Almost 30% had at least moderately increased scores for depression and anxiety. Proxy reports correlated moderately to strongly with all corresponding child measures, but parents tended to overestimate the burden of itch. Correlations between PPS-Skin and other measures of psychosocial health persisted from initial visit to month 12, demonstrating responsiveness to change.
Limitations: Single-center study
Conclusion: PPS-Skin and its associated PPS-Skin-Proxy tool are valid for use in children with AD and valuable additions to studying childhood mental health.
DOI: 10.17632/h7vc8hnb7j
title: IKKβ primes inflammasome formation by recruiting NLRP3 to the trans-Golgi network

description: Immunoblot source data and raw numerical data of the experiments presented in Schmacke et al. "IKKβ primes inflammasome formation by recruiting NLRP3 to the trans-Golgi network" Immunity 2022.
DOI: 10.6084/m9.figshare.20448702.v3
title: Placostylus stable isotopes

description: Data used in the paper " High-resolution stable isotope profiles from shells of the land snail <em>Placostylus </em>reveal contrasting patterns between snails originating from New Zealand and New Caledonia". Contains stable isotopic values from nine <em>Placostylus </em>shells.
DOI: 10.6084/m9.figshare.7105433.v1
title: Supplementary Material for: lncRNA DLG1-AS1 Promotes Cell Proliferation by Competitively Binding with miR-107 and Up-Regulating ZHX1 Expression in Cervical Cancer

description: <b><i>Background/Aims:</i></b> Recent studies have revealed that long non-coding RNAs (lncRNAs) are involved in the occurrence and development of various tumors, thereby attracting increasing attention from researchers. The important biological functions of lncRNAs have been recognized gradually, but their mechanism in cervical cancer remains unclear. <b><i>Methods:</i></b> Differentially expressed lncRNAs in cervical cancer and para-carcinoma tissues were identified by screening using an lncRNA array, and candidate lncRNAs were verified by quantitative real-time PCR. A series of bioinformatics and molecular biological methods were adopted to investigate the interactions among lncRNAs, microRNAs (miRNAs), and miRNA target genes in cervical cancer. Cell viability was measured using a Cell Counting Kit-8 assay. <b><i>Results:</i></b> DLG1-AS1 was the most significantly up-regulated lncRNA in cervical cancer tissues, and it was confirmed that cervical cancer patients with high DLG1-AS1 expression had a poor prognosis. Down-regulation of DLG1-AS1 expression suppressed the proliferation of cervical cancer cells. Further investigation revealed that DLG1-AS1 eliminated the inhibition of miR-107 on the expression of its target gene ZHX1 by competitively binding to miR-107. Moreover, rescue assays proved that the effect of DLG1-AS1 on the proliferation of cervical cancer cells was dependent on miR-107. <b><i>Conclusion:</i></b> DLG1-AS1/miR-107/ZHX1 can form a competitive endogenous RNA network that regulates the proliferation of cervical cancer cells, resulting in tumor progression.
DOI: 10.6084/m9.figshare.7108364.v1
title: Single Cell RNA-Seq Simulations for Ntranos, Yi, et al., 2019

description: This figshare repo contains the kallisto quantification of single cell RNA-seq simulations, which were used to benchmark differential expression methods in Ntranos, Yi et al., Nature Methods, 2019 [https://www.nature.com/articles/s41592-018-0303-9, https://github.com/pachterlab/NYMP_2018/]. Use of these simulations is welcome, given proper citation to the manuscript.<br>There are three simulations from RSEM. Each simulation has two cell groups, 105 cells from a "null" group and 105 cells from a "perturbed" group. These cells are sorted accordingly in the .rds files (first 105 vs last 105).<br>1. In the correlated changes simulation (sims_genes), genes are chosen to be perturbed and all transcripts of that gene are perturbed.<br>2. In the independent changes simulation (sims_transcripts), transcripts and independently chosen to be perturbed.<br>3. In the experimental simulation (sims_exp), effect sizes are derived from an experiment using DESeq2, and then transcripts within a gene are chosen to be perturbed with the same effect-sizes (matched by rank-order) as detected in experiment.<br>Files:- perturb.tsv list the perturbed genes / transcripts and their effect sizes.- tximport.rds and tx_tximport.rds provide the transcript counts and gene counts, accordingly.-pseudo_batch contains the directory of TCCs. matrix.tsv is the matrix of TCCs pertaining to the 210 cells. matrix.ec is a EC to transcript/TCC mapping. For more information on TCCs, consult the manuscript or ask questions at https://github.com/pachterlab/NYMP_2018.<br>Finally, we include a splatter simulation of 2 cell groups.The splat directory contains:- splat.rds which is the splatter object, containing the parameterization of the splatter simulation. Reading this file requires the splatter R library and its dependencies. 300 total cells were simulated; 105 cells from each cell group was taken and used benchmarking in our manuscript.- the transcript counts table (counts.rds) and its corresponding gene counts table (genecounts.rds). - perturb.tsv lists the perturbed transcripts.<br><br>
DOI: 10.17632/7t9snvwv3p
title: Early fusion intermediate of ACE2-using coronavirus spike acting as antiviral target

description: Coronavirus fusion with and entry into the host cell depends on viral spike, which acts as a crucial component of viral infection. However, the lack of receptor-activated spike intermediate conformation has hindered a comprehensive understanding of spike-induced membrane fusion. Here, we captured an ACE2-induced early fusion intermediate conformation (E-FIC) of SARS-CoV-2 spike in which HR1 in S2 has ejected while S1 remains attached. This E-FIC can transition to the late fusion intermediate conformation after S2' cleavage. Leveraging this discovery, we designed an E-FIC-targeted dual-functional antiviral protein AL5E. AL5E effectively inactivated ACE2-using coronaviruses and inhibited their infection, outperforming a mono-functional antiviral in protecting animals against these coronaviruses. This study has identified the E-FIC and used it as target for the development of a dual-functional antiviral for the prevention and treatment of ACE2-using coronavirus infection.
DOI: 10.17632/3sdss7h6ry
title: Data for: Decoding pyroclastic density current flow direction and shear conditions in the flow boundary zone via particle-fabric analysis

description: One of the greatest challenges in volcanology is extracting information from volcanic deposits that inform the conditions at the time of emplacement. Here we explore particle shape-fabric within samples from the column-collapse pyroclastic density current (PDC) deposits generated by the 18 May 1980 eruption of Mt. Saint Helens (MSH). Particle shape-fabric is the mutual alignment of particles within the samples, which is dependent of shearing conditions at the time of deposition. Here, particle shape-fabric is used to address the following hypotheses: (1) particle shape-fabric will align with previous interpretations of PDC flow direction during the 1980 event; (2) samples extracted from PDC deposits immediately above a basal contact will show higher extents of fabric development (i.e. clast alignment) relative to samples extracted well above the contact; and (3) samples extracted from the proximal bedded deposits, located on the steep flanks of the volcano, will have higher extents of fabric development relative to samples extracted from the massive facies found in the gently dipping pumice plain. We find that fabric orientations approximate previous flow direction interpretations well for massive PDC deposits, validating the method of using particle-shape fabric to determine flow direction. However, while samples extracted immediately above the PDC deposit-substrate contact do not show a higher measure of clast alignment relative to samples taken well above flow contacts, the typical clast bimodality suggests some degree of traction transport and thus higher shearing conditions relative to when the currents deposited massive lapilli tuffs. Samples extracted from the proximal bedded deposits do not show higher extents of fabric development relative to the massive deposits, supporting previous interpretations that these deposits formed from a rapidly sedimenting, concentrated flow boundary zone that was thin enough to be frequently interrupted or influenced by the overriding turbulent portion of the flow. Finally, observations of fine scale variability in measured fabric within a single outcrop indicates unsteady flow conditions and step-wise aggradation during deposition. This work demonstrates that particle shape-fabric analyses can aid in decoding PDC flow conditions, and future, complementary experimental work may allow for the extraction of quantitative information regarding the magnitudes of shear within the lower flow boundary zone of PDCs.
DOI: 10.17632/bx2w3xczhy
title: Data for: Compounding matters: event-related potential evidence for early semantic access to compound words

description: The dataset includes preprocessed and scored event-related potential (ERP) data on which we tested our hypotheses. The hypotheses and associated analytical techniques are described in the manuscript, and the README file attached provides a brief description of the variables in the dataset.
DOI: 10.6084/m9.figshare.10184468.v1
title: Winter wheat NordGen

description: Winter wheat landraces mainly of Scandinavian origin available at genebank NordGen
DOI: 10.6084/m9.figshare.14381012.v1
title: SRR5836475.methylation.bigWig

description: Processed data for ICM_rep1_WGBS from SRA.<br>
DOI: 10.6084/m9.figshare.7016372.v1
title: Varicella Zoster FastQC data

description: FastQC reports - Varicella Zoster Virus long-read sequencing dataset
DOI: 10.17632/5ckbwmz5tt
title: 10.1016/j.clinph.2024.02.034

description: Raw data of "Resting-state EEG rhythms are abnormal in post COVID-19 patients with brain fog without cognitive and affective disorders" Doi 10.1016/j.clinph.2024.02.034
DOI: 10.17632/7zyfckrf87
title: Data for: Hydrogen existence state of a hydrogenated amorphous carbon coating and its thermal stability
DOI: 10.6084/m9.figshare.24680694.v3
title: Supplementary material

description: Folder including the supplementary materials of I DARE, IULM Dataset of Affective REsponses.
DOI: 10.17632/35jfgtzkk4
title: The Dystonia Gene THAP1 Controls DNA Double Strand Break Repair Choice. Shinoda et al
DOI: 10.17632/pz9rrw4z9b
title: LINF_130012500

description: C2CD5-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vgpm3sx7pz
title: Does tDCS selectively modulate the pre-frontal cortex hemo-dynamics? An immediate effect-controlled trial on depressed and healthy people

description: Spreadsheets used to statistical analysis.
DOI: 10.6084/m9.figshare.4873010.v1
title: Neoproterozoic basement history of Wrangel Island and Arctic Chukotka: integrated insights from zircon U–Pb, O and Hf isotopic studies

description: SIMS zircon <sup>18</sup>O/<sup>16</sup>O isotopic data.
DOI: 10.17632/thh5rbsp94
title: Dispersion data and inverted anisotropic Vs model in southeast Tibet

description: This dataset contains the Rayleigh wave phase velocity dispersion data extracted from ambient noise cross-correlations (DISPER.zip). These dispersion data were employed to construct the crust-scale anisotropic shear wave velocity model within southeast Tibet (Ani_Vs_model.dat).
DOI: 10.6084/m9.figshare.20337573.v1
title: Data from "Phylogeny and evolution of the genus Cervus (Cervidae, Mammalia) as revealed by complete mitochondrial genomes"

description: Sequences od Cervus with accession number OL679912 – OL679924 in Fasta and GenBank formats.
DOI: 10.17632/x26v2kk2bk
title: Transient and prolonged DRD3 induced autophagy 1

description: Raw results from cell and animal experiments
DOI: 10.17632/spszxd8r3z
title: Dataset of tugHall simulations of cell evolution for colorectal cancer

description: Dataset contains results of multiply parallel calculations using the tugHall simulator. Output data of simulations are variant allele frequencies for four genes (APC, KRAS, TP53, and PIK3CA) related to colorectal cancer. During each simulation tugHall stochastically reproduces Darwinian evolution for cancer cells and calculates clonal heterogeneity. The probabilities of stochastic processes depend on a correspondence matrix between genome information and cancer hallmarks. As a result, tugHall records variant allele frequencies for the final stage of evolution. The number of trials is several million to get rich statistics of stochastic processes. These data can be used for approximate Bayesian computation and other statistical methods to get personalized coefficients for patients with colorectal cancer. The procedure of usage data is explained in our papers [Bioinformatics, 36, 11 (2020) 3597; ISMCO 2020: Mathematical and Computational Oncology (2020) 71] in which the part of these data was used.
DOI: 10.17632/5fkggn5rkc
title: 20200122Xuewei Hao-Appendix-Polycyclic aromatic hydrocarbon and nitro-polycyclic aromatic hydrocarbon emissions when crop residues are burned in domestic stoves in rural China

description: The Appendix of "Polycyclic aromatic hydrocarbon and nitro-polycyclic aromatic hydrocarbon emissions when crop residues are burned in domestic stoves in rural China"
DOI: 10.17632/ndfy3cs2mb
title: DOSLP:Dataset of Student Location Prediction inside the University in India

description: In the field of education it is very important to notice the students location once they have entered inside the university campus from morning to evening. So students will visit different locations inside the university campus frequently like cafeteria, library etc. In our research we have designed and developed the web interface to collect the students location dataset from private technical university in India. A permission letter was granted from the university computer science program director from University, India. The dataset is anonymised by eliminating sensitive and identifiable students’ information and prepared to be used for location prediction of students location inside the university campus. Also by using the students dataset we are preprocessing ,and analyzing number of students spending time in the different location of the university and also we are categorizing the gender of the students ratio who spends time in the different location of the campus.
DOI: 10.25405/data.ncl.21896634.v1
title: Lysozyme degradation results

description: The lysozyme degradation of chitosan-genipin hydrogel disks was investigated gravimetrically in lysozyme/PBS solution containing 2 mg/ml lysozyme.
DOI: 10.17632/4tzx6b7x6v
title: Data for: Gut microbiome patterns depending on children’s psychosocial stress: reports versus biomarkers.

description: Data used for the manuscript "Gut microbiome patterns depending on children’s psychosocial stress: reports versus biomarkers". Gut microbiome sequencing was done in 93 Belgian children 8-16y old. Stress measures included negative events, negative emotions, emotional problems reported by parents, happiness, hair cortisol and heart rate variability (pnn50 parameter reflecting parasympathetic activity).
DOI: 10.17632/jv552br84z
title: Data for: Novel Cytogenetic Imaging method with sub-kilobase resolution: Tn5-FISH

description: Dear editor, The comments and issues raised by reviewers were addressed in the attached reviewer's comments__final for submission.doc, and the content of Supplementary Material.doc, S3-Tn5 probe prepare methods-v2.doc, and Manuscript 0312.doc were changed accordingly. Thank you very much for the efforts from reviewers and editors. Best wishes. Juntao Gao Research Associate Professor Tsinghua University
DOI: 10.17632/p3zjyxsczk
title: Data for: Sulfo-functional 3D porous cellulose/graphene oxide composites for highly efficient removal of methylene blue and tetracycline from water

description: Figure S1 SEM images of pure CE aerogels. 2 wt% (a), 3 wt% (b), 4 wt% (c and e), 5 wt% (d and f), BET nitrogen adsorption/desorption isotherm of the CE4 aerogel (g). Figure S2The images of pure CE2 (a), CE3 (b), CE4 (c) and CE5 (d) aerogels with the loading of 0 and 100 g weight. The weight of CE aerogels were 0.0382 g, 0.0565 g, 0.0745 g and 0.0892 g, respectively. Pure CE aerogels with (e) and without (f) added NaCl, CG composite aerogels with (g) and without (h) added NaCl. Figure S3: EDX spectrum and element analysis results of the CG4.5 (a) and SCG4.5 (b); EDX mapping of the CG4.5 (c) and SCG4.5 (d). Figure S4: The illustrative morphology of the SCG aerogel (a); adsorption mechanism of MB and TC by the SCG aerogel (b). Table S1 Bulk densities and liquid adsorptions of pure CE aerogels. Table S2 BET results of some representative samples. Table S3 Deconvolution of C1s peaks of CG4.5 and SCG4.5 aerogels. Table S4 Kinetics parameters for MB adsorption. Table S5 Kinetics parameters for TC adsorption. Table S6 Parameters of the isotherms models for MB and TC adsorption on the SCG aerogels.
DOI: 10.21233/nd9m-ap90
title: Tsinghua University ostracode surface sample dataset

description: Raw data for the Tsinghua University ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/ftw7r4n559
title: Microbial Community Dataset For Sphalerite And Oyster Shell SBBR Study

description: This file includes the microbial community composition, community change, and predicted function for the paper titled "Simultaneous N and P removal in sequencing batch biofilm reactors (SBBRs) with sphalerite-oyster shell media."