cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0rr1zhj
title: CIL:56119, Homo sapiens. In Cell Image Library

description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
description: Scan 09_F_CA_B -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
DOI: 10.6075/j0zg6shg
title: CIL:55705, Homo sapiens. In Cell Image Library

description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
description: Scan 17_K_RE_C -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
DOI: 10.6075/j0w66m1r
title: CIL:55921, Homo sapiens. In Cell Image Library

description: Scan 04_B_ST_A -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
DOI: 10.6075/j0d50n7w
title: CIL:55570, Homo sapiens. In Cell Image Library

description: Scan 14_G_CT_E -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
DOI: 10.6075/j0zk5gz7
title: CIL:55956, Homo sapiens. In Cell Image Library

description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
description: Scan 04_G_CA_F -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
DOI: 10.6075/j0jw8f6g
title: CIL:56044, Homo sapiens. In Cell Image Library

description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
description: Scan 07_D_EP_F -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
DOI: 10.6075/j047497g
title: CIL:39405, Vorticella convallaria, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: 11 micrographs of views of a serially-sectioned contracted Vorticella convallaria cell that show the main features of this cell. This figure shows 4 food vacuoles, 3 segments of the macronucleus, perioral cilia at the adoral pole that forms a wreath of cilia around the oral opening in the uncontracted cell, and the lower part of the food vacuole-forming cytopharynx. TEM taken on 4/5/71 by R. Allen with Hitachi HU11A operating at 75kV. Neg 2,150X. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0d21wzj
title: CIL:39404, Vorticella convallaria, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: 11 micrographs are views of a serially-sectioned contracted Vorticella convallaria cell that show the main features of this cell. This figure shows 5 food vacuoles; 3 segments of the macronucleus; perioral cilia; cytopharynx; basal bodies of the oral membranelles of the peristome; and basal bodies of trochal band. TEM taken on 4/2/71 by R. Allen with Hitachi HU11A operating at 75kV. Neg. 2,150X. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
DOI: 10.6075/j0cn7360
title: CIL:39403, Vorticella convallaria, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: 11 micrographs are views of a serially-sectioned contracted Vorticella convallaria cell that show the main features of this cell. This figure shows 4 food vacuoles; 3 segments of macronucleus; cytopharynx open to peristome; cytostome or cell mouth; perioral cilia covered by folds of the pellicle and cortex. TEM taken on 4/5/71 by R. Allen with Hitachi HU11A operating at 75kV. Neg. 2,150X. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0gb23c5
title: CIL:39385, mus muscula, endothelial cell, blood cell. In Cell Image Library

description: Instrument: JEOL 100CX TEM Please see http://www.dartmouth.edu/~emlab/manuals/sempreps/index.html for details on specimen preparation.
description: Transmission electron micrscope image of a thin section cut through an area of bone marrow area near the cartilage/bone interface in a mouse kneecap. Image shows small opening in the thin endotheliun of the vascular sinus wall, where a blood cell is crossing the thin vascular sinus wall and into the sinus lumen.
description: Preparation: formaldehyde fixed tissue; glutaraldehyde fixed tissue; tissue in epoxy resin embedment; ethanol dehydration
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt; lead salt
Processing history: unprocessed raw data
DOI: 10.6075/j0cc102x
title: CIL:39384, Amorphophallus titanum. In Cell Image Library

description: Images collected on a FEI XL-30 FEG ESEM. Sample preparation protocol is available on the Dartmouth EM Facility web site at http://remf.dartmouth.edu:8080/EM-Wiki/36.
description: Transmission electron micrograph showing Amorphophallus titanum anther. The anther on the left is a cross section, showing the locule (cavity where the pollen is located). The anther on the right shows the opening where the pollen are released.This image is part of a group that includes CIL: 39377- 39384.
description: Preparation: glutaraldehyde fixed tissue; formaldehyde fixed tissue; critical_point dried specimen; ethanol dehydration
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: scanning electron microscopy (SEM)
Parameter imaged: elastic scattering of electrons
Source of contrast: differences in deposition of metal shadow
Visualization methods: visualization of contiguous regions; uranyl salt; gold
Processing history: unprocessed raw data
DOI: 10.6075/j0959gwt
title: CIL:39383, Amorphophallus titanum. In Cell Image Library

description: Images collected on a FEI XL-30 FEG ESEM. Sample preparation protocol is available on the Dartmouth EM Facility web site at http://remf.dartmouth.edu:8080/EM-Wiki/36.
description: Transmission electron micrograph of an Amorphophallus titanum anther. This high magniification image shows pollen just being released from the opening at the top of the anther.This image is part of a group that includes CIL: 39377- 39384.
description: Preparation: glutaraldehyde fixed tissue; formaldehyde fixed tissue; critical_point dried specimen; ethanol dehydration
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: scanning electron microscopy (SEM)
Parameter imaged: elastic scattering of electrons
Source of contrast: differences in deposition of metal shadow
Visualization methods: visualization of contiguous regions; uranyl salt; gold
Processing history: unprocessed raw data
DOI: 10.6075/j03x8606
title: CIL:39381, Amorphophallus titanum. In Cell Image Library

description: Images collected on a FEI XL-30 FEG ESEM. Sample preparation protocol is available on the Dartmouth EM Facility web site at http://remf.dartmouth.edu:8080/EM-Wiki/36.
description: Transmission electron micrograph of an Amorphophallus titanum anther. This high magnification image shows pollen inside the locule (cavity where the pollen is located).This image is part of a group that includes CIL: 39377- 39384.
description: Preparation: glutaraldehyde fixed tissue; formaldehyde fixed tissue; critical_point dried specimen; ethanol dehydration
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: scanning electron microscopy (SEM)
Parameter imaged: elastic scattering of electrons
Source of contrast: differences in deposition of metal shadow
Visualization methods: visualization of contiguous regions; uranyl salt; gold
Processing history: unprocessed raw data
DOI: 10.6075/j04j0dgf
title: CIL:39380, Amorphophallus titanum. In Cell Image Library

description: Images collected on a FEI XL-30 FEG ESEM. Sample preparation protocol is available on the Dartmouth EM Facility web site at http://remf.dartmouth.edu:8080/EM-Wiki/36.
description: Transmission electron micrograph of an Amorphophallus titanum anther. This cross section is a high magnification image showing pollen inside the locule (cavity where the pollen is located).This image is part of a group that includes CIL: 39377- 39384.
description: Preparation: glutaraldehyde fixed tissue; formaldehyde fixed tissue; critical_point dried specimen; ethanol dehydration
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: scanning electron microscopy (SEM)
Parameter imaged: elastic scattering of electrons
Source of contrast: differences in deposition of metal shadow
Visualization methods: visualization of contiguous regions; uranyl salt; gold
Processing history: unprocessed raw data
DOI: 10.6075/j06d5scs
title: CIL:39379, Amorphophallus titanum. In Cell Image Library

description: Transmission electron micrograph of an Amorphophallus titanum anther. This cross section shows the locule (cavity where the pollen is located).This image is part of a group that includes CIL: 39377- 39384.
description: Images collected on a FEI XL-30 FEG ESEM. Sample preparation protocol is available on the Dartmouth EM Facility web site at http://remf.dartmouth.edu:8080/EM-Wiki/36.
description: Preparation: glutaraldehyde fixed tissue; formaldehyde fixed tissue; critical_point dried specimen; ethanol dehydration
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: scanning electron microscopy (SEM)
Parameter imaged: elastic scattering of electrons
Source of contrast: differences in deposition of metal shadow
Visualization methods: visualization of contiguous regions; uranyl salt; gold
Processing history: unprocessed raw data
DOI: 10.6075/j0222t47
title: CIL:39346, Passiflora edulis, pollen. In Cell Image Library

description: Preparation: acetolysis
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: scanning electron microscopy (SEM)
Parameter imaged: elastic scattering of electrons
Source of contrast: differences in deposition of metal shadow
Visualization methods: visualization of contiguous regions; shadowing and plating
Processing history: unprocessed raw data
description: Instrument: FEI XL-30 FEG ESEM. Complete protocol can be found at http://www.dartmouth.edu/~emlab/manuals/sempreps/pollen.html
description: Scanning electron micrograph of passion flower pollen. A related image is CIL:39344.
DOI: 10.6075/j07h1hgn
title: CIL:39469, Xenopus laevis, oocyte, follicle cell. In Cell Image Library

description: Fluorescent micrograph of stage V-VI Xenopus laevis oocytes surrounded by thousands of follicle cells, as visualized by Hoechst staining.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: Hoechst 33342
Processing history: unprocessed raw data
description: B0008308 Xenopus laevis oocytes. Wellcome Images available under the following creative commons usage http://creativecommons.org/licenses/by-nc-nd/2.0/uk/
DOI: 10.6075/j0154gd5
title: CIL:39451, Vorticella convallaria, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Mitochondria of Vorticella convallaria like other ciliates, have tubular cristae arising from their inner membranes. However, they also have a bundle of filaments (DNA?) that extend through the center of the organelle. TEM taken on 4/5/71 by R. Allen with Hitachi HU11A operating at 75kV. Neg 17,150X. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
DOI: 10.6084/m9.figshare.30490391
title: Dataset for 'Carrion decomposition in a subtropical forest biodiversity experiment'

description: This dataset contains data from a large-scale field experiment on carrion decomposition conducted in subtropical China within the BEF-China forest biodiversity experiment. It includes measurements of decomposition rates of 1,728 mouse carrion and records of 30,975 invertebrate decomposers sampled across 96 forest plots in spring 2023 and summer 2024.
DOI: 10.6075/j0n29w7b
title: CIL:39408, Vorticella convallaria, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: 11 micrographs of views of a serially-sectioned contracted Vorticella convallaria cell that show the main features of this cell. This figure shows 4 food vacuoles; 3 segments of the macronucleus; perioral cilia in an opening to the outside. Origins of lamellae covered by a myoneme along the adoral side of the peristome that extend into the cytopharynx. TEM taken on 4/5/71 by R. Allen with Hitachi HU11A operating at 75kV. Neg. 2,400X. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6084/m9.figshare.30490391.v1
title: Dataset for 'Carrion decomposition in a subtropical forest biodiversity experiment'

description: This dataset contains data from a large-scale field experiment on carrion decomposition conducted in subtropical China within the BEF-China forest biodiversity experiment. It includes measurements of decomposition rates of 1,728 mouse carrion and records of 30,975 invertebrate decomposers sampled across 96 forest plots in spring 2023 and summer 2024.
DOI: 10.15468/dl.eb5tq6
title: Occurrence Download

description: A dataset containing 1428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Panthera onca",
 "Country is Mexico",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Unknown evidence)"
 ]
 }
 }
 ]
}

 The dataset includes 1428 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009440-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.