cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15368014
title: Genomic Characterization of a Post-Omicron Recombinant SARS-CoV-2 Strain: Transition from BA.1 to BA.5 Using Public Data (SRR32480181)

description: This study presents computational analysis of a recombinant SARS-CoV-2 isolate derived from publicly available FASTQ data (SRR32480181) submitted by Ginkgo Bioworks. The genome shows evidence of recombination between Omicron BA.1 and BA.5 subvariants based on RDP5 and MAFFT alignment.




Sample
SRR32480181


Strain
hCoV-19/USA/VA-GBW-GKISBBBF25035/2025


Clade (Nextclade)
24H (LF.7)


Pango Lineage
LF.7.3


Recombinant Signal
BA.1 + BA.5 hybrid pattern


Breakpoint Region
~Position 11,200–11,300


GenBank Submission
Submitted via NCBI Portal




Key Mutations Identified

Unique mutations detected using iVar variant calling at ≥5% allele frequency threshold.

RdRp (nsp12):



C14408T → P323L– May affect remdesivir binding


nsp14:



A23403G → A762V– Located near proofreading domain


Spike Protein:



C241T– UTR mutation

A502G → T19R– Antigenic site change

T23014C → L452R– Immune escape signal

G22578A → T478K– Common in Omicron


C23604G → P681H



– Enhances cell entry

T23599G → S371F– Part of antigenic supersite

C23603T → S373P– Strong immune evasion potential

C23604A → S375F– Extended Spike motif


Recombination Detected

Based on RDP5 analysis, this isolate shows mosaic structure between BA.1 and BA.5 subvariants.

Detected Breakpoints:




Start
End
Parental Sequences


11288
11296
BA.1 → BA.5


28254
28254
BA.5 → BA.1




Supporting Methods:



RDP

BootScan

Chimaera

GeneConv


Supporting Files Included




File
Description


SRR32480181_consensus_5.0.fasta
Reconstructed genome


aligned.fasta
MAFFT alignment for RDP5


nextclade.csv
Mutation and lineage classification


SRR32480181_coverage.png
Coverage depth across genome


run_full_pipeline.sh
Script used for processing


README.md
This document


LICENSE
CC-BY 4.0




Notes

This work was conducted independently using open-source tools and public data. No institutional funding involved.

Recombination patterns suggest ongoing evolution within Omicron descendants. Hybrid strains like this may have altered ACE2 binding and immune evasion profiles.

The isolate has been submitted to GenBank for formal classification and will be updated upon acceptance.

License

This work is licensed under a Creative Commons Attribution 4.0 International License. You are free to share and adapt the material, even commercially, provided you give appropriate credit.

Author & Contact

Tahir Hussain Bhatti

📧 Email: tahirhb@hotmail.com

🌐 Website: tahirhb.com/reports

🧬 ORCID: 0009-0003-6042-1616
DOI: 10.15468/dl.sb2tj2
title: Occurrence Download

description: A dataset containing 83350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orthilia secunda (L.) House",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 83350 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022568-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/8gvf-g066
title: Jordain Creek water chemistry dataset

description: Raw data for the Jordain Creek water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/hnhk-ne66
title: Winnipeg River water chemistry dataset

description: Raw data for the Winnipeg River water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r323-ct35
title: Hole Bog testate amoebae surface sample dataset

description: Raw data for the Hole Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bn4b-em17
title: Lakkasuo testate amoebae surface sample dataset

description: Raw data for the Lakkasuo testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/mnc2-m863
title: Tahquamenon Bay testate amoebae surface sample dataset

description: Raw data for the Tahquamenon Bay testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/te9t-5c28
title: NLA06608-1143 diatom surface sample dataset

description: Raw data for the NLA06608-1143 diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.fxxhxn
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "PublishingOrg is 19456090-b49a-11d8-abeb-b8a03c50a862",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)"
 ]
}

 The dataset includes 310 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022586-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/hkw9-kr53
title: Emigrant Lake water chemistry dataset

description: Raw data for the Emigrant Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/kn32-5k08
title: Sophie Lake diatom bottom sample dataset

description: Raw data for the Sophie Lake diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7fae-r882
title: Beaver River water chemistry dataset

description: Raw data for the Beaver River water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25442/hku.28892189
title: Supporting data for "Governing Complexity in Public Organizations: Information, Organizing, and Agent Behaviors "

description: This thesis develops a conceptual framework that outlines how critical variations in information properties defined in qualitative terms—interactive complexity and descriptive complexity—actively shape individual behaviors and organizational structures. It empirically tests the proposed framework through a series of analyses of policy crisis intelligence in China, examining how government agencies gather and process information during latent periods, when threats loom but have not yet erupted. The study employs causal process tracing (CPT) to analyze China’s policy intelligence management through official documents and field interviews with 10 governmental officials in mainland China. This dataset includes the informed consent letter and interview summary involved in this study.
DOI: 10.21233/chg1-er23
title: Hidden Lake diatom surface sample dataset

description: Raw data for the Hidden Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/59yp-2m98
title: Grand Traverse Bay testate amoebae surface sample dataset

description: Raw data for the Grand Traverse Bay testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/x131-1z65
title: Swiss Trap G14 pollen surface sample dataset

description: Raw data for the Swiss Trap G14 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/pk80-0p60
title: Melvern Lake diatom dataset

description: Raw data for the Melvern Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.rnm9me
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caprimulgus indicus Latham, 1790"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022588-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/bp05-8k73
title: WASS21 pollen surface sample dataset

description: Raw data for the WASS21 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.bc2x4d
title: Occurrence Download

description: A dataset containing 60791141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "BasisOfRecord is Specimen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60791141 records from 2446 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022555-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddfuut
title: Occurrence Download

description: A dataset containing 2201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Biatas nigropectus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2201 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083843-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwye7y
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bispira polyomma",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083844-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/s36-mpl-8t2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/twn-qst-nep
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/48e-qxk-xkp
title: Rusa C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bzn-kkd-873
title: Cervidae Goldfuss, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l80-jw1-4vh
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/31m-rq2-c23
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eg6-bet-dhg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jsm-e25-v4s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ls9-m3a-76t
title: Canis lupus familiaris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8e4-0qn-7j5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f5s-6y7-scz
title: Acrocodia indica (Desmarest, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.c2wjpu
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paeonia jishanensis"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022921-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1yt-4m0-zct
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ye3-mlz-b2b
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z9x-bjm-d11
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1qt-834-e60
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6kw-v5y-wv1
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bph-e5t-gsl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ghp-3se-ns2
title: Hystrix (Acanthion) javanica F. Cuvier, 1823

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fnq-k15-n0c
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0yg-8ew-29p
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3x9-28y-kdq
title: Hystrix Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/37k-0xs-bav
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d88-s66-k9a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pgc-exr-5qm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xw6-f3p-6n0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/45d-4kt-6jt
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5g9-7n7-e6s
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/03a-brh-fxr
title: Elephas Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gfp-bqq-h9a
title: Elephas Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p70-ctk-q28
title: Sus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pm4-gd8-mw2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b8q-3l5-1w0
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xh5-gtv-1ck
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c99-7wx-xfn
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1g8-qaf-k8x
title: Duboisia Szidat, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n7f-7fg-tqh
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.56a44r
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Limnanthes pumila grandiflora",
 "Year 2010-2025"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022922-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/76h-pts-2sk
title: Sus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sw6-hnk-3em
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3886/e204641v1
title: Record deleted due to violation of ICPSR terms

description: <b>Record deleted due to violation of ICPSR terms.</b>
DOI: 10.3535/5er-2qe-exn
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3al-rc2-gk4
title: Muntiacus muntjak (Zimmermann, 1780)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x15-jnm-w4m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.11599693
title: P. Robert Penzel (p1510)

description: -- Documentation --Name: P. Robert PenzelmusiXplora-ID: p1510musiXplora-URI: https://musixplora.de/mxp/p1510Gender: mDate of Birth: 02 January 1873Place of Birth: MarkneukirchenDate of Death: 20 July 1938Place of Death: MarkneukirchenFirst Mentioned: 1892Sectors: InstrumentenbauProfessions (Musical): GeigenbauerMain Place of Activity: MarkneukirchenOther Places of Activity: Frankreich, Großbritannien, SchwerinAusbildung:
GroupRoleNamemXp-IDLehrerInnen und AusbilderInnenSchülerOtto Carl Paul Schünemanns4281Institutionen:
RoleTitlemXp-IDRelatedDeutsche Geigenmacherschule3030405Titel/Medien:
RoleSigelTitlemXp-IDRelatedLütgendorff 1922Die Geigen- und Lautenmacher vom Mittelalter bis zur Gegenwart. 2 Bände. Lüt25002059Changelog:  - v0.0.1: Initial Upload.
DOI: 10.5281/zenodo.11599694
title: P. Robert Penzel (p1510)

description: -- Documentation --Name: P. Robert PenzelmusiXplora-ID: p1510musiXplora-URI: https://musixplora.de/mxp/p1510Gender: mDate of Birth: 02 January 1873Place of Birth: MarkneukirchenDate of Death: 20 July 1938Place of Death: MarkneukirchenFirst Mentioned: 1892Sectors: InstrumentenbauProfessions (Musical): GeigenbauerMain Place of Activity: MarkneukirchenOther Places of Activity: Frankreich, Großbritannien, SchwerinAusbildung:
GroupRoleNamemXp-IDLehrerInnen und AusbilderInnenSchülerOtto Carl Paul Schünemanns4281Institutionen:
RoleTitlemXp-IDRelatedDeutsche Geigenmacherschule3030405Titel/Medien:
RoleSigelTitlemXp-IDRelatedLütgendorff 1922Die Geigen- und Lautenmacher vom Mittelalter bis zur Gegenwart. 2 Bände. Lüt25002059Changelog:  - v0.0.1: Initial Upload.