cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2g7fcj
title: CCDC 2271257: Experimental Crystal Structure Determination

description: Related Article: Maitrey Travadi, Rajendrasinh N. Jadeja, Ray J. Butcher|2024|Polyhedron|247|116701|doi:10.1016/j.poly.2023.116701
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24624426
title: Analysis of reassigned stop codons distribution in B. nonstop proteins

description: Codon usage To compare the usage of reassigned stop codons in the nuclear-encoded mitochondrial proteins and non-mitochondrial proteins of Blastocrithidia, we needed to define mitochondrial proteins of Blastocrithidia. We decided to rely on the protein homologues from T. brucei. As mitochondrial dataset for T. brucei we used the set of the proteins imported into the mitochondrion (importome) obtained by Peikert and colleagues (Peikert et al., 2017).For this analysis, we took only genes that had a single ortholog in Blastocrithidia and a single orthologue in T. brucei. There were 4,561 of these genes. We defined as mitochondrial those proteins of B. nonstop that had an importome orthologue in T. brucei. There were 892 of such proteins. The rest 3’669 were defined as non-mitochondrial. Then for each gene we calculated relative abundance of the reassigned stop codons (stop share) - a proportion of reassigned stop codons divided by the total number of codons encoding glutamate and tryptophan. Relative protein abundance was calculated as the number of individual peptides coming from a protein divided by the maximum number of peptides coming from one protein.
DOI: 10.6084/m9.figshare.24624426.v1
title: Analysis of reassigned stop codons distribution in B. nonstop proteins

description: Codon usage To compare the usage of reassigned stop codons in the nuclear-encoded mitochondrial proteins and non-mitochondrial proteins of Blastocrithidia, we needed to define mitochondrial proteins of Blastocrithidia. We decided to rely on the protein homologues from T. brucei. As mitochondrial dataset for T. brucei we used the set of the proteins imported into the mitochondrion (importome) obtained by Peikert and colleagues (Peikert et al., 2017).For this analysis, we took only genes that had a single ortholog in Blastocrithidia and a single orthologue in T. brucei. There were 4,561 of these genes. We defined as mitochondrial those proteins of B. nonstop that had an importome orthologue in T. brucei. There were 892 of such proteins. The rest 3’669 were defined as non-mitochondrial. Then for each gene we calculated relative abundance of the reassigned stop codons (stop share) - a proportion of reassigned stop codons divided by the total number of codons encoding glutamate and tryptophan. Relative protein abundance was calculated as the number of individual peptides coming from a protein divided by the maximum number of peptides coming from one protein.
DOI: 10.25934/pr00005461.0
title: Available IPD datapackage for study 'A Randomized, Double-Blind, Parallel-Group, Monotherapy Study to Compare the Safety and Efficacy of Two Doses of Topiramate in the Treatment of Newly Diagnosed or Recurrent Epilepsy'

description: The purpose of this study is to compare the safety and effectiveness of two doses of topiramate as monotherapy in the treatment of pediatric and adult patients with newly diagnosed or recurrent epilepsy.
DOI: 10.5281/zenodo.10201141
title: Kinex infers causal kinases from phosphoproteomics data

description: Reference table of 82,755 pre-scored peptides containing serine and/or threonine phosphorylation sites for 303 kinases. This reference table is used as input for Kinex, a Python package, which infers causal serine/threonine kinases from phosphoproteomics data. Kinex is released with the GNU General Public License, openly accessible to all users at https://github.com/bedapub/kinex.
DOI: 10.5281/zenodo.10201142
title: Kinex infers causal kinases from phosphoproteomics data

description: Reference table of 82,755 pre-scored peptides containing serine and/or threonine phosphorylation sites for 303 kinases. This reference table is used as input for Kinex, a Python package, which infers causal serine/threonine kinases from phosphoproteomics data. Kinex is released with the GNU General Public License, openly accessible to all users at https://github.com/bedapub/kinex.
DOI: 10.17909/kt9e-h986
title: Data from JWST/NIRCam Transmission Spectroscopy of the Nearby Sub-Earth GJ 341b

description: Three transit observations of GJ 341b with JWST NIRCam/F444W. These data were acquired as part of JWST program GO 1981 and were published in Kirk et al., 2024.
DOI: 10.6084/m9.figshare.24032331.v1
title: Li Journal of the Endocrine Society Supplementary Table 1 & 2

description: Supplementary Table 1 & 2 to the article by Li et al published in Journal of the Endocrine Society
DOI: 10.25345/c5gt5fs0q
title: MassIVE MSV000093472 - GNPS test Arabidopsis thaliana warm thermic stress seeds
title: Testaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
DOI: 10.25919/v5bv-jv13
title: Parkes observations for project P960 semester 2023OCTS_01

description: We aim to carry out receiver pointing and characterisation tests of Parkes receivers. Typically, these tests are carried out after the receiver package is installed, but time does not always allow for proper characterisation. Receivers for consideration include UWL, MARS and 13MM packages. In addition to cross-referencing C007 for flux calibration via pointing, we aim to conduct gain-elevation and system temperature experiments using the Moon, to ensure users of the Parkes Observatory have the most accurate information available for calibration purposes.
DOI: 10.25919/yg7v-ce38
title: Parkes observations for project P1172 semester 2023OCTS_02

description: PSR J1713+0747 is a very important millisecond pulsar for global pulsar timing array campaigns, due to its long-term observation history, very stable and narrow profile and strong S/N. In April 2021, the pulsar experienced a significant event related to a change in its magnetosphere, presented as an observable change in the pulsar profile. Since then, the pulsar has been slowly recovering and we wish to observe this recovery with high-cadence observations to allow us to create a detailed time-resolved series of variations in the MSPs profile, polarisation, and other properties. Under this proposal, we wish to probe the profile recovery on weekly timescales (once per week per month), revealing additional short timescale behaviours, indicative of changes in the magnetosphere which are not available to other telescopes in the world, thanks to the Parkes UWL. This will also allow us to determine if the magnetosphere has returned to its original configuration or is settling into a new one. Understanding the recovery of this event is key for demonstrating that such pulsars are still viable clocks for use in gravitational wave studies, and in turn, provide us with new data on how the normally stable magnetosphere of this millisecond pulsar responds to an impulsive change in state.
DOI: 10.14473/csda/s7hvlq/9ycnme
title: D_VUPSV00020.pdf

description: Dotazník
DOI: 10.14473/csda/s7hvlq/expcjj
title: TI_VUPSV00020.pdf

description: Technická informace
DOI: 10.14473/csda/s7hvlq/i80sfe
title: CTZ_vysokoškoláci_data_original.tab

description: Datový soubor
DOI: 10.14473/csda/s7hvlq/bpfg6d
title: dotaznik_integrace_studentu_FINAL.docx

description: Dotazník
DOI: 10.14473/csda/s7hvlq
title: Studenti veřejných vysokých škol z třetích zemí studující v českém jazyce na území Hlavního města Prahy 2018

description: Projekt volně navazuje na zjištění předcházejících terénních mapování vybraných skupin cizinců ze třetích zemí a zaměřuje se zejména na úzce danou cílovou skupinu studentů veřejných vysokých škol ve věku 19 až 26 let studujících v českém jazyce na území hl. m. Prahy. Tyto studenti tvoří podskupinu tzv. mezinárodních studentů. Kromě analýzy dat MŠMT bylo v rámci projektu realizováno expertní dotazování a hloubkové rozhovory s respondenty z řad cizinců – studentů veřejných vysokých škol. Současně se uskutečnilo terénní dotazníkové šetření na uvedené cílové skupině, v rámci kterého bylo dotazováno celkem 319 respondentů. Ve výzkumu byly použity různé metody, kterými byla zkoumána míra integrace studujících cizinců v takových oblastech, jako jsou ekonomické podmínky života v ČR, sociální vazby, studium v ČR včetně znalosti češtiny, projekce budoucího profesního života a rodinného života. Cílem projektu bylo zmapovat specifika integrace studentů cizinců studujících vysokoškolské obory na území hl. m. Prahy, jejichž studium je financováno ze státního rozpočtu ČR. Výstupy projektu přispějí k včasnému nastavení vhodných preventivních opatření ze strany MV ČR, která napomohou k předcházení rizik neúspěšné integrace této skupiny mladých lidí.
DOI: 10.14473/csda/s7hvlq/osdoob
title: Technická_zpráva_Integrace_studentů.docx

description: Technická zpráva
DOI: 10.7910/dvn/4q1awk
title: Methods used by Canadian dairy farmers for on-farm euthanasia and the emotions associated with the decision and the practice of euthanasia

description: The objectives of this study were to describe current practices related to on-farm euthanasia performed by Canadian dairy farmers, and to assess the presence of emotions and complex feelings surrounding the act of on-farm euthanasia. A cross-sectional study design was used to gather this information using an online questionnaire (available here) that enrolled Canadian dairy farmers exclusively.
DOI: 10.6084/m9.figshare.24032331
title: Li Journal of the Endocrine Society Supplementary Materials

description: Supplementary Table 1 & Supplementary Table 1 & 2 to the article by Li et al published in Journal of the Endocrine Society
DOI: 10.6084/m9.figshare.24032331.v3
title: Li Journal of the Endocrine Society Supplementary Materials

description: Supplementary Table 1 & Supplementary Table 1 & 2 to the article by Li et al published in Journal of the Endocrine Society
DOI: 10.6084/m9.figshare.24032331.v2
title: Li Journal of the Endocrine Society Supplementary Table 1 & 2

description: Supplementary Table 1 & Supplementary Table 1 & 2 to the article by Li et al published in Journal of the Endocrine Society
DOI: 10.25919/f4xd-hx88
title: Parkes observations for project P1295 semester 2023OCTS_05

description: We propose observing time with the Parkes telescope to investigate four ``spider" millisecond pulsars (MSPs), PSR J1048+2339 (a redback spider), PSR J1908+2105 (an MSP that occupies a region of parameter space between black widows and redbacks), PSR J2052+1219 and PSR J2256-1024 (black widow spiders). Spider MSPs are commonly seen to exhibit frequency-dependent eclipsing. Observations with wide bandwidth telescopes like Parkes UWL (700-4000 MHz) will be extremely useful to study the eclipse mechanisms in these systems. Eclipse properties of spider MSPs are hitherto unexplored at the frequency regime available with the Parkes UWL receiver. We propose to investigate a sample of 4 MSPs mentioned above (for which polarization has not been studied) with the Parkes telescope using the UWL receiver in full polar mode, which will be addressed with this proposal. One of the aims is to model the eclipse phase spectra using wideband observations of these pulsars in an optically thick-to-thin transitioning regime (optical depth nearly 1), to explore the eclipse mechanism. Observing the possible changes in rotation measure (RM) at eclipse ingress and egress will allow us to probe the magnetic field in the eclipse boundaries. We request to cover nearly one full orbit for each of these MSPs. Thus we propose 23 hours of observing time including time for setup and calibration in each epoch with the Parkes UWL receiver for the investigation of the eclipse mechanism as well as the polarization, profile evolution, and spectra of four spider MSPs.
DOI: 10.17632/g9yjn97kns.1
title: Resurrection of Perilimnastes (Sonerileae, Melastomataceae)

description: ### Bredia_hirsuta_reference_genome.fasta Description: the draft genome sequence of Bredia hirsuta. ### Perilimnastes_genomic_dataset.vcf Description: VCF file of the genomic dataset, generated by mapping whole-genome resequencing data of 36 samples to Bredia hirsuta reference genome, further filtered based on hard filtering by GATK and LD by PLINK.
DOI: 10.17632/g9yjn97kns.2
title: Resurrection of Perilimnastes (Sonerileae, Melastomataceae)

description: ### Perilimnastes_genomic_dataset.vcf Description: VCF file of the genomic dataset, generated by mapping whole-genome resequencing data of 36 samples to Bredia hirsuta reference genome, further filtered based on hard filtering by GATK and LD by PLINK.
DOI: 10.17632/mx3nj27ddh.2
title: Data for the Assessment of Stress Integration Schemes for Large-Deformation Finite Element Analysis

description: Files "results_comp_ext_repository.xlsx", "results_ext_rot_repository.xlsx", "results_simple_shear_repository.xlsx", "results_uniaxial_extension_repository.xlsx" gather the results (stress predictions) of four tests, aimed to check stress integration algorithms in four corresponding deformation paths: “extension-compression”, “extension-rotation”, “simple shear”, "uniaxial extension". They are chosen in order to include the most common motions of the structure particles, i.e. relative motions that yield extension, compression and shear combined with possible rigid rotations of the body. Particularly, the rotation motion is simulated in order to test the incremental objectivity or, better, the priority on rigid motion or weak objectivity of the algorithms. The exact analytical solutions of the three tests are known from literature. In all of the tests, a unit square (1 x 1 m2) with unit thickness undergoes a deformation path under plane stress conditions. It is made of linear elastic material with Young’s modulus E = 1 Pa and Poisson ratio nu = 0. A fixed number of time steps N equal to 50 (the highest employed in the reference papers) is chosen. The simulated “time” parameter t ranges between 0 and 1 in “extension-compression” as well as “extension-rotation” tests, whereas it raises from 0 to 0.9 in “simple shear” test. Therefore, the corresponding time steps t are equal to 1/50 and 9/500, respectively. The various simulation models include different stress integration methods labelled as described in the reference research paper [1]. In addition, data for plane elements (PLANE42, PLANE182) of Ansys code are added. The files include a data sheet and a corresponding plot for each category of algorithms (classical update-Lagrange algorithms, CC methods, and commercial software). The data are organized in columns, where stress components are given for each stress update method. The file "test_Rodriguez.ans" collects the APDL commands required to generate the data for the Ansys plane elements considered. In the file "cc methods_validation_repository.xlsx" the simple shear test is used in order to validate the methods based on a corotated configuration (CC methods) that use Green-Naghdi and Zaremba-Jaumann objective stress rates. Such validation is cited in the reference article. [1] F. Stefani, M. Frascio, C. A. Niccolini Marmont Du Haut Champ, Choice of the stress integration scheme for accurate large-deformation finite element analysis, Proc IMechE Part C: J Mechanical Engineering Science, 2023, Vol. 237(17) 3977–3986
DOI: 10.17632/mx3nj27ddh.3
title: Data for the Assessment of Stress Integration Schemes for Large-Deformation Finite Element Analysis

description: Files "results_comp_ext_repository.xlsx", "results_ext_rot_repository.xlsx", "results_simple_shear_repository.xlsx", "results_uniaxial_extension_repository.xlsx" gather the results (stress predictions) of four tests, aimed to check stress integration algorithms in four corresponding deformation paths: “extension-compression”, “extension-rotation”, “simple shear”, "uniaxial extension". They are chosen in order to include the most common motions of the structure particles, i.e. relative motions that yield extension, compression and shear combined with possible rigid rotations of the body. Particularly, the rotation motion is simulated in order to test the incremental objectivity or, better, the priority on rigid motion or weak objectivity of the algorithms. The exact analytical solutions of the three tests are known from literature. In all of the tests, a unit square (1 x 1 m2) with unit thickness undergoes a deformation path under plane stress conditions. It is made of linear elastic material with Young’s modulus E = 1 Pa and Poisson ratio nu = 0. A fixed number of time steps N equal to 50 (the highest employed in the reference papers) is chosen. The simulated “time” parameter t ranges between 0 and 1 in “extension-compression” as well as “extension-rotation” tests, whereas it raises from 0 to 0.9 in “simple shear” test. Therefore, the corresponding time steps t are equal to 1/50 and 9/500, respectively. The various simulation models include different stress integration methods labelled as described in the reference research paper [1]. In addition, data for plane elements (PLANE42, PLANE182) of Ansys code are added. The files include a data sheet and a corresponding plot for each category of algorithms (classical update-Lagrange algorithms, CC methods, and commercial software). The data are organized in columns, where stress components are given for each stress update method. The file "test_Rodriguez.ans" collects the APDL commands required to generate the data for the Ansys plane elements considered. In the file "cc methods_validation_repository.xlsx" the simple shear test is used in order to validate the methods based on a corotated configuration (CC methods) that use Green-Naghdi and Zaremba-Jaumann objective stress rates. Such validation is cited in the reference article. [1] F. Stefani, M. Frascio, C. A. Niccolini Marmont Du Haut Champ, Choice of the stress integration scheme for accurate large-deformation finite element analysis, Proc IMechE Part C: J Mechanical Engineering Science, 2023, Vol. 237(17) 3977–3986
DOI: 10.17632/h63y9h8vd2.1
title: Environmental Protection Tax and Firms’ ESG Investment: Evidence from China

description: Does environmental protection tax (EPT) improve firms’ environmental governance performance? Previous studies ignore that EPT affects firms' environmental governance behavior by increasing discharge and non-compliance costs. To fill this gap, we estimate the impact of EPT on firms' environmental, social, and governance (ESG) investments using Chinese listed firms during 2013-2020. we propose two key hypothesises: "Hypothesis 1A. EPT increases the firm’s green-producing and green-responsibility investment" and "Hypothesis 1B. EPT improves the quality of a firm’s environmental information disclosure". We estimate the impact of EPT on firms' environmental, social, and governance (ESG) investments using Chinese listed firms during 2013-2020. To evaluate firms’ ESG activities, we construct specific E, S, and G indicators relating to the environment, including the firm’s green-producing investment, green responsibility investment, and environmental information disclosure, which highlight the key impact of EPT on firms’ environmental governance. The three dimensions (E, S, and G) of ESG are often considered independent in most studies. but they can be relevant on an environmental level, reflecting the different ways in which corporate environmental governance is conducted. EPT is measured at the firm level using pollution discharge fees from 2013 to 2017 and pollution discharge taxes from 2018 to 2020. We find that EPT significantly forces firms to engage in more ESG activities after controlling for firm characteristics, firm-level, and year-level fixed effects. Our findings are robust to IV approaches, Heckman Correction, panel Generalized Method of Moments (GMM) estimations, an alternative EPT measure (EPT standards at the prefecture-level city), and ESG measures (ESG scores from a third party), as well as a group test. We also investigate the channel through which EPT boosts firms' ESG activities. One is an increasing tax payment as polluting discharges increase. The other is the ex-post noncompliance cost because EPT imposes strict penalties on violators, it includes illegal costs, negotiation costs, and litigation costs. We find that EPT has a positive impact on ESG in firms with greater cost pressure, which is measured by highly polluting industries and experiences with environmental controversy. Furthermore, we find that the ESG improvements are more significant in firms that are privately controlled, located in areas with sound environmental protection justice, and have weaker competitiveness.
DOI: 10.25345/c5c24qz5s
title: MassIVE MSV000093473 - QTOF_UHPLC-MS/MS Senegal mangrove species
title: Mangrove senegal raw extract : Ethanol and water QTOF_UHPLC-MS/MS
DOI: 10.17632/nj69y9hzzg.1
title: Bioaccumulation of Lead (Pb) content in three species bivalves in Jakarta Bay, Indonesia

description: Environmental pollution by heavy metals has become a serious problem in Jakarta Bay. Mobilization of heavy metals as a result of anthropogenic activities has caused the release of heavy metals into the environment, one of which is Pb. Several methods already used to clean up the environment from these kinds of contaminants, but most of them are costly and difficult to get optimum results. In addition heavy metal pollutans in the waters are very stable and tend to be persistent. Recently, bioaccumators is an effective and affordable technological solution used to extract or remove inactive metals and metal pollutants from contaminated soil and water. This technology is environmental friendly and potentially cost effective using bivalves. These study objectives to analyzed the Pb content of three species of Jakarta Bay bivalves. The results showed that Pb content in the Eastern and Western Season bivalve tissue was significantly lowest in P. viridis (0,166 ± 0,016μg/g dan 0,161 ± 0,155μg/g) compared the Pb concentration in A. antiquata (0,264 ± 0,015μg/g dan 0,247±0,044μg/g), and M. meretrix (0,270 ± 0,016μg/g dan 0,240 ± 0,053μg/g). In this study also showed that the concentration of heavy metal Pb in the bivalve shell of P. viridis was significantly lower than that of two species (A. antiquata and M. meretrix). Pb content in the Eastern Season bivalves did not significantly different from that in the Westerrn Season. This is caused by a weather anomaly where the rainy season occurs almos throughout year of 2020. The Pb content in the bivalves shell was significantly higher than in the body tissues. It is because Pb can replace calcium ions in the formation of animal bones or bivalve shells.
DOI: 10.17632/ddmvrdc4sc.5
title: Research evaluation information - CM-DIR

description: In order to share the data from the research carried out with some participants, this space was created. The evaluation of the research is carried out in relation to the CM-DIR method, which was created to specify the dynamic behaviour of the user in the face of recommendation systems.
DOI: 10.17632/ddmvrdc4sc.1
title: Research evaluation information - MC-DIR

description: In order to share the data from the research carried out with some participants, this space was created. The evaluation of the research is carried out in relation to the MC-DIR method, which was created to specify the dynamic behaviour of the user in the face of recommendation systems.