cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/t4k5kj3cxr.1
title: Lymph node colonization induces tissue remodeling via immunosuppressive fibroblast-myeloid cell niches supporting metastatic tolerance

description: Lymph-node (LN) colonization in cancer is linked to poor prognosis and often precedes distant metastases. Evidence suggests that LN-colonization induces systemic immunosuppression facilitating distant metastasis. We investigated LN-mediated immunosuppression in head-and-neck cancer patients using spatial proteomics, spatial transcriptomics, and an in-vivo model of melanoma LN-metastasis. Both primary tumors and paired LNs of nodal-positive patients exhibit enhanced interferon-signaling and an enrichment of immunosuppressive myeloid cells and cancer-associated fibroblasts (CAFs). The spatial intersection of these myeloid-CAF-enriched niches with perifollicular T-cell-zones and LN-follicles are linked to enhanced T-cell dysfunction and Treg activation therein, thereby driving architectural LN remodeling. These immune suppressive changes extend to adjacent non-tumor-involved LN regions and nearby tumor-free LNs, but were not detected in LNs of non-cancer patients, reflecting a systemic effect that compromises anti-tumor immunity beyond the tumor-infested LN. Hence, our findings establish LN colonization as an active driver of systemic immunosuppression, facilitating metastatic progression.

The files provided include:
(1) Single cell data table of the pre-processed and normalized CODEX imaging data from the HNSCC discovery cohort (U54_CODEX_HNSCC_full_df_070125)
(2) Single cell data table of the pre-processed and normalized orthogonally collected spatial transcriptomics data from a subset of the HNSCC discovery cohort (U54_spatial_transcriptomics_070125)
(3) Single cell data table of the pre-processed and normalized CODEX imaging from the HNSCC validation cohort and Healthy LN tissue atlas (U54_HNSCC_Normal_LN_TMA_Validation_170825)
(4) Associated clinical metadata files for both the HNSCC discovery, HNSCC validation and Normal LN TMA cohorts. 
(5) Single cell data table of the pre-processed and normalized CODEX imaging dataset from our in-vivo melanoma model of LN-metastasis (Murine_data_metadata_concat_070125)
DOI: 10.17632/hy5v62xxpm.2
title: A study of Enalaprilat reverses neutrophil polarization imbalance via targeting taurine-STING axis for treatment of diabetic wounds. Lu et al.

description: Raw data
DOI: 10.5281/zenodo.18423712
title: Golden dataset (test)
DOI: 10.5281/zenodo.18423711
title: Golden dataset (test)
DOI: 10.15468/dl.gdxb4s
title: Occurrence Download

description: A dataset containing 620 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Calcarius [GBIF Backbone Taxonomy])",
 "StateProvince is one of (Alaska)",
 "EventDate 1980-01-01-2026-01-01"
 ]
 }
 ]
}

 The dataset includes 620 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000928-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17955370
title: Resting-State EEG Dataset for Depression and Healthy Controls with BDI & MOCA Score

description: Participants were included in this study among the registries to the Health Sciences University, Gülhane Faculty of Medicine, Gülhane Training and Research Hospital, Department of Mental Health and Diseases. All participants who were at least 18 years old and signed the informed consent attended to study. After checking inclusion such as age ranges between 18-45, right-handedness according to the Edinburgh Handedness Inventory, and exclusion criteria such as being co-diagnosed according to DSM-5, and having used any psychotropic medication in the last month, 22 DD patients (16 female, 6 male) were diagnosed with DD according to DSM-5 criteria, and 25 healthy control subjects (17 female, 8 male) with no psychiatric history and matched in terms of gender and age attended to 5-minute EC and EO resting state EEG sessions. All applicants also attended BDI and MOCA tests. The experimental protocol was approved by the Health Sciences University Scientific Research Ethics Committee (Decision File Number: 2022-366). 5-minute EO and EC resting state EEG signals were recorded at the Mental Health and Diseases Department of Gülhane Training and Research Hospital. All signals were recorded using the UPM-PLUS (GRASS TECHNOLOGIES, Massachusetts, USA) Polysomnography (PSG) device. The resting state EEG data were recorded using 16 Ag/AgCl EEG electrodes (C3, T3, C4, T4, Fp1, Fp2, F3, F4, F7, F8, P3, P4, T5, T6, O1, O2) on the scalp based on the 10–20 system with 200 Hz sampling rate with A1 and A2 reference electrodes placed on earlobes. To detect eye movements, electrooculography (EOG) signals of the right and left eyes vertically were recorded during all EEG sessions. EEG and EOG signals were recorded between 0.5-70 Hz frequency ranges. To ensure signal integrity, all channels were visually inspected for non-physiological artifacts. Segments containing muscle noise or amplifier saturation were excluded. The impedance of all electrodes was kept below 10KΩ.
DOI: 10.5281/zenodo.18201487
title: Narok West subcounty Water, Sanitation and Hygiene (WASH) Knowledge, Attitudes and Practices (KAP) study.

description: These are findings of a quantitative study conducted in Narok West subcounty (Kenya), which sought to establish knowledge, attitudes and practices on water, sanitation and hygiene (WASH). The study was conducted in March 2025.  It was part of a wider study on the scope of weather variation and climate change on surface water resources in Narok West and its effects on community livelihoods and health.
DOI: 10.5281/zenodo.18405085
title: Plots_PAI74_HKO50_Dicorynia_guianensis_nSSR

description: This dataset contains nuclear microsatellite (nSSR) genotypes for the tropical tree species Dicorynia guianensis sampled in French Guiana near Regina St-Georges. A total of 66 polymorphic nuclear SSR loci were used to genotype individuals across two forest plots representing contrasting ecological and management contexts.

The dataset includes genotypes from approximately 300 individuals per plot, covering adult trees, juveniles, and seedlings. For each individual, the dataset provides:



multilocus nSSR genotypes,

geographic coordinates (latitude and longitude)

plot identity

diameter at breast height (DBH)

logging statut (logged/unlogged)


The sampled plots include both unlogged (plot HKO50) and selectively logged forests (plot PAI74),  plot logged 12 years prior to sampling.
DOI: 10.15468/dl.ny64b8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclina lunulata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000929-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7dft4
title: Occurrence Download

description: A dataset containing 1142 records in GBIF matching the query:
SELECT
 '620' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 66.79314043790278
 AND decimalLatitude &lt;= 72.77152049497572
 AND decimalLongitude &gt;= 107.76047075558493
 AND decimalLongitude &lt;= 140.3993851042269
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1142 records were derived from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000941-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18423706
title: Marine Macrofauna assessment in areas of Cassiopea spa. communities at Jobos Bay NERR, Puerto Rico

description: macrofauna density counts in areas of upside-down jellies from Puerto Rico. From October 2022-April 2024
DOI: 10.5281/zenodo.18423705
title: Marine Macrofauna assessment in areas of Cassiopea spa. communities at Jobos Bay NERR, Puerto Rico

description: macrofauna density counts in areas of upside-down jellies from Puerto Rico. From October 2022-April 2024
DOI: 10.15468/dl.zmpftx
title: Occurrence Download

description: A dataset containing 1476 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ferrisia virgata)"
 ]
}

 The dataset includes 1476 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000930-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18413584
title: Photographic dataset of Wild Edible Plants of Guinea-Bissau, West Africa

description: Photographic dataset of wild edible plant species (WEP) of Guinea-Bissau, West Africa.Includes one folder for each of the 114 recorded WEP species, with 3 to 6 photographs, one from a selectedherbarium voucher and the rest showing various aspects of the plant. The folders are named with the species' names, and the image files are in JPEG format.The collection of folders and files is compressed in ZIP format, named Wild_Edible_Plants_Guinea_Bissau.zip
DOI: 10.5281/zenodo.18171771
title: Photographic dataset of Wild Edible Plants of Guinea-Bissau, West Africa

description: Photographic dataset of wild edible plant species (WEP) of Guinea-Bissau, West Africa.Includes one folder for each of the 114 recorded WEP species, with 3 to 6 photographs, one from a selectedherbarium voucher and the rest showing various aspects of the plant. The folders are named with the species' names, and the image files are in JPEG format.The collection of folders and files is compressed in ZIP format, named Wild_Edible_Plants_Guinea_Bissau.zip
DOI: 10.15468/3j9srx
title: Taxonomic novelties and phylogenetic insights on Gilliesieae (Allioideae, Amaryllidaceae) from Chile

description: This dataset contains the digitized treatments in Plazi based on the original journal article García, Nicolás, Zúñiga-Acevedo, Paula, González, Matías A., Espinoza, M. Matías, Soto, Constanza, Cisternas-Gallardo, Benjamín J. (2026): Taxonomic novelties and phylogenetic insights on Gilliesieae (Allioideae, Amaryllidaceae) from Chile. PhytoKeys 270: 93-117, DOI: 10.3897/phytokeys.270.175170AbstractTribe Gilliesieae (Allioideae, Amaryllidaceae) comprises bulbous plants characterized by their zygomorphic flowers and a distribution restricted to Chile, Argentina, Peru, and Bolivia. The main objective of this article is to introduce four new species of Gilliesieae recently discovered in central Chile, two belonging to Gilliesia (G. reflexa, G. taguataguensis) and two to Miersia (M. nahuelbutensis, M. subandina). Three of the new species are exclusively distributed in the O’Higgins Region, while the fourth has been recorded in the Biobío and La Araucanía regions. In addition, the new species were placed within the phylogenetic context of the tribe to explore their evolutionary relationships. For this purpose, plastid DNA regions (rbcL and trnL-F) and the nuclear ribosomal DNA spacer (ITS) were amplified and sequenced, and the resulting sequences were analyzed together with molecular data from previous studies. The phylogenetic results support the inclusion of the new species within Gilliesia and Miersia, respectively, and support a previously suggested broad circumscription of Gilliesia, encompassing Ancrumia, Gethyum, and Solaria. We provide morphological descriptions, a distribution map, field images, illustrations, and conservation assessments for the new species, as well as an updated key to all species of Gilliesieae.
DOI: 10.15468/dl.nmptbe
title: Occurrence Download

description: A dataset containing 25428 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Plethodon cinereus"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2024",
 "DecimalLatitude is greater than or equal to 39.800293049929145",
 "DecimalLatitude is less than or equal to 49.3755163493321",
 "DecimalLongitude is greater than or equal to -92.87017281670407",
 "DecimalLongitude is less than or equal to -73.31916441842102",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 25428 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000933-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhrrrb
title: Occurrence Download

description: A dataset containing 258340626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "SpeciesKey is not null",
 "Year is less than or equal to 2012",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Living Specimen, Specimen, Fossil)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 231.656358263958",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "not" : {
 "License" : [
 "is one of (CC-BY-NC 4.0)"
 ]
 }
 }
 ]
}

 The dataset includes 258340626 records from 2173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000923-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5p8k0
title: Data from: Pesticide tolerance in amphibians: induced tolerance in susceptible populations, constitutive tolerance in tolerant populations

description: The role of plasticity in shaping adaptations is important to
 understanding the expression of traits within individuals and the
 evolution of populations. With increasing human impacts on the
 environment, one challenge is to consider how plasticity shapes responses
 to anthropogenic stressors such as contaminants. To our knowledge, only
 one study (using mosquitoes) has considered the possibility of induced
 insecticide tolerance. Using populations of wood frogs (Lithobates
 sylvaticus) located close to and far from agricultural fields, we
 discovered that exposing some populations of embryos and hatchlings to
 sublethal concentrations of the insecticide carbaryl induced higher
 tolerance to a subsequent lethal concentration later in life.
 Interestingly, the inducible populations were located &gt;800 m from
 agricultural areas and were the most susceptible to the insecticide. In
 contrast, the noninducible populations were located close to agricultural
 areas and were the least susceptible. We also found that sublethal
 concentrations of carbaryl induced higher tadpole AChE concentrations in
 several cases. This is the first study to demonstrate inducible tolerance
 in a vertebrate species and the pattern of inducible and constitutive
 tolerance among populations suggests the process of genetic assimilation.
description: TTD
 dataTime to death data for
 wood frog tadpoles from both embryonic and hatchling exposure
 experiments.AChE Conc
 dataAcetylcholine esterase
 concentration of tadpoles from both the embryo and hatchling
 experiments.
DOI: 10.5061/dryad.10sg7
title: Data from: The evolution of phylogeographic datasets

description: Empirical phylogeographic studies have progressively sampled greater
 numbers of loci over time, in part motivated by theoretical papers showing
 that estimates of key demographic parameters improve as the number of loci
 increases. Recently, next-generation sequencing has been applied to
 questions about organismal history, with the promise of revolutionizing
 the field. However, no systematic assessment of how phylogeographic data
 sets have changed over time with respect to overall size and information
 content has been performed. Here, we quantify the changing nature of these
 genetic data sets over the past 20 years, focusing on papers published in
 Molecular Ecology. We found that the number of independent loci, the total
 number of alleles sampled and the total number of single nucleotide
 polymorphisms (SNPs) per data set has improved over time, with
 particularly dramatic increases within the past 5 years. Interestingly,
 uniparentally inherited organellar markers (e.g. animal mitochondrial and
 plant chloroplast DNA) continue to represent an important component of
 phylogeographic data. Single-species studies (cf. comparative studies)
 that focus on vertebrates (particularly fish and to some extent, birds)
 represent the gold standard of phylogeographic data collection. Based on
 the current trajectory seen in our survey data, forecast modelling
 indicates that the median number of SNPs per data set for studies
 published by the end of the year 2016 may approach ~20 000. This survey
 provides baseline information for understanding the evolution of
 phylogeographic data sets and underscores the fact that development of
 analytical methods for handling very large genetic data sets will be
 critical for facilitating growth of the field.
description: Garrick_etal_MEC2015_Survey_DataThe survey database is comprised of data reported in empirical phylogeography papers that satisfied search / inclusion criteria described in the main text of Garrick et al. (2015, Mol. Ecol.). Detailed descriptions of column headers are given in the "read me" Metadata file.
DOI: 10.5061/dryad.n2649
title: Data from: Bird predation selects for wing shape and coloration in a damselfly

description: Wing shape is related to flight performance, which is expected to be under
 selection for improving flight behaviours such as predator avoidance.
 Moreover, wing conspicuousness, usually involved in sexual selection
 processes, is also relevant in terms of predation risk. In this study, we
 examined how predation by a passerine bird, the white wagtail Motacilla
 alba, selects wing shape and wing colour patch size in males of the banded
 demoiselle Calopteryx splendens. The wing colour patch is intra- and
 intersexually selected in the study species. In a field study, we compared
 wings of live damselflies to wings of predated damselflies which are
 always discarded after predation. Based on aerodynamic theory and a
 previous study on wing shape of territorial tactics in damselflies, we
 predicted an overall short and broad wing, with a concave front margin
 shape to be selected by predation. This shape would be expected to improve
 escaping ability. Moreover, we predicted that wing patch size should be
 negatively selected by predation. We found that selection operated
 differently on fore- and hindwings. In contrast to our predictions,
 predation favoured a slender general forewing shape. However, the
 predicted wing shape was favoured in hindwings. We also found selection
 favouring a narrower wing colour patch. Our results suggest different
 roles of fore- and hindwings in flight, as previously suggested for
 Calopteryx damselflies and shown for butterflies and moths. Forewings
 would be more involved in sustained flight and hindwings in flight
 manoeuvrability. Our results differ somehow from a recently published work
 in the same study system, but using another population, suggesting that
 selection can fluctuate across space, despite the simplicity of this
 predator–prey system.
description: Wing
 dataWing length, wing width,
 patch length and patch width, separated for fore- and hindwings and for
 alive and predated individuals.LandmarksLandmark coordinates for the studied wings in .tps format. There are four files, corresponding to fore- and hindwings and alive and predated individuals.
DOI: 10.5061/dryad.bh6hs70
title: Data from: Why are some plant—nectar robber interactions commensalisms?

description: Many plants that bear hidden or recessed floral nectar experience nectar
 robbing, the removal of nectar by a floral visitor through holes pierced
 in the corolla. Although robbing can reduce plant reproductive success,
 many studies fail to find such effects. We outline three mechanistic
 hypotheses that can explain when interactions between plants and
 nectar-robbers should be commensilistic rather than antagonistic: the
 non-discrimination (pollinators do not avoid robbed flowers), visitor
 prevalence (robber visitation is rare relative to pollinator visitation),
 and pollen saturation (stigmas receive sufficient pollen to fertilize all
 ovules with one or very few pollinator visits) hypotheses. We then explore
 these mechanisms in the North American subalpine, bumble bee-pollinated
 and nectar-robbed plant Corydalis caseana (Fumariaceae). We first
 confirmed that the effects of nectar robbing on female reproductive
 success were neutral in C. caseana. We then tested the three mechanisms
 underlying neutral effects using a combination of observational studies
 and experiments. We found evidence for all three mechanisms. First,
 consistent with the non-discrimination hypothesis, pollinators failed to
 discriminate against experimentally robbed flowers or inflorescences even
 though naturally robbed flowers offered significantly lower nectar rewards
 than unrobbed flowers. Second, C. caseana was more commonly visited by
 pollinators than by nectar robbers, in accordance with the visitor
 prevalence hypothesis. Third, stigmas of virgin (unvisited) flowers as
 well as those visited once by pollinators were saturated with pollen, with
 all stigmas bearing pollen loads several orders of magnitude higher than
 the number of ovules per fruit, consistent with the pollen saturation
 hypothesis. Our investigation of the mechanisms driving the commensal
 outcome of nectar robbing in this system deepens our understanding of the
 ecology of nectar robbing and contributes to a more general understanding
 of the variation in the outcomes of interactions between species.
description: Heiling.et.al.Oikos.2018.dataAn Excel workbook of data for Heiling et al 2018. First sheet is a metadata file, all other sheets are arrange chronologically. Sheet names describe the analysis the data were used for.