cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14782686
title: Giant virus genomes from Expansion of the genomic and functional diversity of global ocean giant viruses

description: High quality and clean partial genomes from the study Expansion of the genomic and functional diversity of global ocean giant viruses.
DOI: 10.5281/zenodo.14782687
title: Giant virus genomes from Expansion of the genomic and functional diversity of global ocean giant viruses

description: High quality and clean partial genomes from the study Expansion of the genomic and functional diversity of global ocean giant viruses.
DOI: 10.34943/089b6543-7005-4430-83e4-db67698a6b7e
title: CCGS John P. Tully Navigation System Deployed 2023-07-11

description: The C.C.G.S. John P. Tully Navigation 01 was deployed on 2023-07-11 on CCGS John P. Tully. The Canadian Coast Guard Ship (CCGS) John P. Tully is owned and operated by the Canadian Coast Guard. This device is a Navigation System. Navigational instruments are used to measure and record positional information of ships, buoys, and autonomous underwater vehicles (AUVs). Typical sensors include latitude, longitude, speed, heading, pitch, roll, and depth. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6084/m9.figshare.28326893
title: Margulis_phylogenomics_mixture.newick

description: Phylogenomic tree based on a mixture model and custom SCMG alignment.
DOI: 10.15468/dl.w5hcj6
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum placitum C.V.Morton"
 ]
}

 The dataset includes 190 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006998-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/39620abf-96a2-4384-bba3-8b35c961ff5e
title: CCGS John P. Tully Navigation System Deployed 2023-05-26

description: The C.C.G.S. John P. Tully Navigation 01 was deployed on 2023-05-26 on CCGS John P. Tully. The Canadian Coast Guard Ship (CCGS) John P. Tully is owned and operated by the Canadian Coast Guard. This device is a Navigation System. Navigational instruments are used to measure and record positional information of ships, buoys, and autonomous underwater vehicles (AUVs). Typical sensors include latitude, longitude, speed, heading, pitch, roll, and depth. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34740/kaggle/dsv/10629637
title: Deepfakes Medical Image Tamper Detection
DOI: 10.15468/dl.qy5kzb
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección Botánica del Herbario Universitario PORT",
 "TaxonKey is Barleria oenotheroides Dum.Cours."
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006995-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26349322
title: ptsd2024

description: Summary statistics from the Psychiatric Genomics Consortium
DOI: 10.6084/m9.figshare.26349322.v2
title: ptsd2024

description: Summary statistics from the Psychiatric Genomics Consortium
DOI: 10.5281/zenodo.14003833
title: Fiber and Ribbon dimensionnal characterization

description: Publication details : 

Precision Engineering of 3D Fibrillar structures: Controlling Fiber Dimensions via Two-Photon Polymerization
DOI: 10.5281/zenodo.14003832
title: Fiber and Ribbon dimensionnal characterization

description: Publication details : 

Precision Engineering of 3D Fibrillar structures: Controlling Fiber Dimensions via Two-Photon Polymerization
DOI: 10.5281/zenodo.14782549
title: Fiber and Ribbon dimensionnal characterization

description: Publication details : 

Precision Engineering of 3D Fibrillar structures: Controlling Fiber Dimensions via Two-Photon Polymerization
DOI: 10.15468/dl.s2paqn
title: Occurrence Download

description: A dataset containing 398105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Geometry POLYGON ((-3.86553 39.95807, -3.885895 39.89575, -3.824824 39.86701, -3.62178 39.94537, -3.561026 39.98827, -3.520564 39.9895, -3.459933 40.01183, -3.359005 40.03528, -3.338892 40.04611, -3.208099 40.0293, -3.05762 40.0436, -3.02758 40.11607, -3.097663 40.29819, -3.127785 40.30755, -3.127785 40.42983, -3.198053 40.5601, -3.268422 40.57844, -3.298611 40.66893, -3.338892 40.66774, -3.419513 40.74642, -3.419553 40.78689, -3.449835 40.82644, -3.379206 41.03034, -3.399375 41.04989, -3.419553 41.10967, -3.480095 41.12802, -3.500345 41.16757, -3.581269 41.18518, -3.662324 41.14245, -3.824824 41.00637, -3.936844 40.9623, -3.957237 40.95152, -3.987843 40.81925, -4.090031 40.80557, -4.202586 40.68013, -4.19234 40.63997, -4.243589 40.6381, -4.253845 40.69851, -4.315462 40.68614, -4.346237 40.67482, -4.315422 40.59489, -4.37707 40.43012, -4.43879 40.42773, -4.479976 40.34477, -4.562443 40.36188, -4.583079 40.19791, -4.541814 40.16894, -4.418209 40.21456, -4.397595 40.24596, -4.315422 40.19801, -4.171894 40.25425, -4.151376 40.21421, -4.049108 40.21782, -3.906269 40.16143, -3.86553 40.16275, -3.824824 40.13347, -3.804523 40.14436, -3.78415 40.10412, -3.682608 40.10738, -3.652185 40.09811, -3.682648 40.04596, -3.743509 40.02353, -3.78419 39.98126, -3.86553 39.95807))"
 ]
}

 The dataset includes 398105 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006979-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26236739
title: BATSsizefracts_MargulisASVseqs.fasta

description: This item contains all of the ASV sequences from the BATS size-fractions 2021 dataset classified as Margulisbacteria through qiime2 feature-classifier using SILVA138 as the reference database.
DOI: 10.6084/m9.figshare.26236739.v1
title: BATSsizefracts_MargulisASVseqs.fasta

description: This item contains all of the ASV sequences from the BATS size-fractions 2021 dataset classified as Margulisbacteria through qiime2 feature-classifier using SILVA138 as the reference database.
DOI: 10.5281/zenodo.14773718
title: VAST_zebrafish_S-BIAD954_subdataset

description: Sub-sample images of images collected from the study BioImage Archieve Study S-BIAD954

Source: https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD954

Citation: Nöth, Julia, et al. "Analysis of vascular disruption in zebrafish embryos as an endpoint to predict developmental toxicity." Archives of Toxicology 98.2 (2024): 537-549.
DOI: 10.6084/m9.figshare.26237096
title: Marinamargulisbacteria bin fasta files

description: contigs for all novel Marinamargulisbacteria recovered as part of "Non-photosynthetic lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean" https://www.cell.com/current-biology/fulltext/S0960-9822(24)01220-X
DOI: 10.6084/m9.figshare.26237096.v1
title: Marinamargulisbacteria bin fasta files

description: contigs for all novel Marinamargulisbacteria recovered as part of "Non-photosynthetic lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean" https://www.cell.com/current-biology/fulltext/S0960-9822(24)01220-X
DOI: 10.6084/m9.figshare.26319559
title: Marinamargulisbacteria bin protein fasta files

description: predicted proteins for all novel Marinamargulisbacteria recovered as part of "Non-photosynthetic lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean"https://www.cell.com/current-biology/fulltext/S0960-9822(24)01220-X
DOI: 10.6084/m9.figshare.26319559.v1
title: Marinamargulisbacteria bin protein fasta files

description: predicted proteins for all novel Marinamargulisbacteria recovered as part of "Non-photosynthetic lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean"https://www.cell.com/current-biology/fulltext/S0960-9822(24)01220-X
DOI: 10.15468/dl.khrnqw
title: Occurrence Download

description: A dataset containing 1933 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hottonia inflata Elliott"
 ]
}

 The dataset includes 1933 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007003-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10574273
title: Heron Island Satellite Imagery Classified Benthic Data and Coral Halo Analyses and Models

description: This dataset includes satellite imagery data from Heron Island, Australia downloaded from Google Earth Pro in 2023, with image from Maxar Technologies dated 2016 clipped to the shallow lagoon layer from the Allen Coral Atlas shape file classified into benthic categories: corals, algae and sand using a combination of unsupervised machine learning spectral classification and manual training and assignment of classes.


We also include 2 notebooks with code used to generate figures and run analyses for data, geometric, and consumer-resource models for coral halo patterns supporting the work entitled, "Consumer-resource interactions reflected in coral halo patterns" by the authors listed. A knitted pdf for R Markdown file is also included.
DOI: 10.5281/zenodo.8335657
title: Heron Island Satellite Imagery Classified Benthic Data and Coral Halo Analyses and Models

description: This dataset includes satellite imagery data from Heron Island, Australia downloaded from Google Earth Pro in 2023, with image from Maxar Technologies dated 2016 clipped to the shallow lagoon layer from the Allen Coral Atlas shape file classified into benthic categories: corals, algae and sand using a combination of unsupervised machine learning spectral classification and manual training and assignment of classes. We also include 2 notebooks with code used to generate figures and run analyses for data, geometric, and consumer-resource models for coral halo patterns supporting the work entitled, "Consumer-resource interactions reflected in coral halo patterns" by the authors listed. A knitted pdf for R Markdown file is also included.
DOI: 10.5281/zenodo.13770777
title: Heron Island Satellite Imagery Classified Benthic Data and Halo Analyses and Models

description: This dataset includes satellite imagery data from Heron Island, Australia downloaded from Google Earth Pro in 2023, with image from Maxar Technologies dated 2016 clipped to the shallow lagoon layer from the Allen Coral Atlas shape file classified into benthic categories: corals, algae and sand using a combination of unsupervised machine learning spectral classification and manual training and assignment of classes. This dataset also includes scoring of selected coral patch reefs for isolated halos across time using historical aerial imagery.

We also include 2 notebooks with code used to generate figures and run analyses for data, geometric, and consumer-resource models for coral halo patterns supporting the work entitled, "Consumer-resource interactions reflected in coral halo patterns" by the authors listed. A knitted html for R Markdown file is also included.
DOI: 10.5281/zenodo.8335656
title: Heron Island Satellite Imagery Classified Benthic Data and Halo Analyses and Models

description: This dataset includes satellite imagery data from Heron Island, Australia downloaded from Google Earth Pro in 2023, with image from Maxar Technologies dated 2016 clipped to the shallow lagoon layer from the Allen Coral Atlas shape file classified into benthic categories: corals, algae and sand using a combination of unsupervised machine learning spectral classification and manual training and assignment of classes. This dataset also includes scoring of selected coral patch reefs for isolated halos across time using historical aerial imagery.

We also include 2 notebooks with code used to generate figures and run analyses for data, geometric, and consumer-resource models for coral halo patterns supporting the work entitled, "Consumer-resource interactions reflected in coral halo patterns" by the authors listed. A knitted html for R Markdown file is also included.
DOI: 10.15468/dl.58n77j
title: Occurrence Download

description: A dataset containing 540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "Country is Colombia",
 "TaxonKey is Chaetostoma thomsoni Regan, 1904"
 ]
}

 The dataset includes 540 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007005-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z49q8g
title: Occurrence Download

description: A dataset containing 331184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Month is one of (April, May, June, July)",
 "OccurrenceStatus is Present",
 "TaxonKey is Erithacus rubecula (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 331184 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006999-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afzsp3
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "TaxonKey is Boana appendiculata"
 ]
}

 The dataset includes 517 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007006-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/spsjf-d1c53
title: Dataset: Evaluation of two environmental DNA (eDNA) approaches for monitoring hemlock woolly adelgid (HWA)

description: Detect and non-detect data for trap and ball sampling.
DOI: 10.15468/dl.fsf4ae
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is LACM Vertebrate Collection",
 "Geometry POLYGON((-118.62701 33.04596,-118.5907 32.91907,-118.42431 32.76656,-118.3275 32.81743,-118.55137 33.05863,-118.62701 33.04596))",
 "HasGeospatialIssue is false",
 "TaxonKey is Peromyscus Gloger, 1841"
 ]
}

 The dataset includes 287 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007009-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14782570
title: Chemical safety of freeze dried fruit

description: Fosetyl and phosphonic acid analysis
DOI: 10.5281/zenodo.14782571
title: Chemical safety of freeze dried fruit

description: Fosetyl and phosphonic acid analysis
DOI: 10.15468/dl.2emwxh
title: Occurrence Download

description: A dataset listing the 30124 species recorded in GBIF matching the query:
{
 "Year" : [
 "1853-1853"
 ]
}

 The dataset's 30124 records were derived from 701 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007002-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ry669p
title: Occurrence Download

description: A dataset containing 1564233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lathyrus L.",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1564233 records from 3918 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007001-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18034928
title: Processed Datasets for Segmentation Mask Guided Hybrid CNN Vision Transformer Framework

description: This Zenodo repository contains processed representatives samples of the dasets generated during the study entitled “Segmentation Mask Guided Hybrid CNN Vision Transformer Framework for Diagnosing Communicable Lung Diseases.” The datasets were created to support deep learning based analysis of chest X-ray images for the automated diagnosis of communicable lung diseases.

The repository includes representative samples of  processed data corresponding to all stages of the proposed pipeline, including lungs segmented chest X-ray images, enhanced image datasets, augmented image datasets, and predicted lung mask datasets. In addition, the numerical data underlying the reported experimental results such as epoch-wise training metrics, evaluation metrics and confusion matrix values are provided as CSV files to ensure transparency and reproducibility.

The processed datasets were derived from publicly available, anonymized chest X-ray repositories, including the COVID-19 Radiography Database and the Montgomery County and Shenzhen Tuberculosis chest X-ray datasets released by the U.S. National Library of Medicine. No personally identifiable information is included in this repository.

All data are released under the Creative Commons Attribution 4.0 International (CC BY 4.0) license and are intended to support open research, reuse, and further development of computer-aided diagnostic methods for medical imaging.
DOI: 10.5281/zenodo.18034927
title: Processed Datasets for Segmentation Mask Guided Hybrid CNN Vision Transformer Framework

description: This Zenodo repository contains processed representatives samples of the dasets generated during the study entitled “Segmentation Mask Guided Hybrid CNN Vision Transformer Framework for Diagnosing Communicable Lung Diseases.” The datasets were created to support deep learning based analysis of chest X-ray images for the automated diagnosis of communicable lung diseases.

The repository includes representative samples of  processed data corresponding to all stages of the proposed pipeline, including lungs segmented chest X-ray images, enhanced image datasets, augmented image datasets, and predicted lung mask datasets. In addition, the numerical data underlying the reported experimental results such as epoch-wise training metrics, evaluation metrics and confusion matrix values are provided as CSV files to ensure transparency and reproducibility.

The processed datasets were derived from publicly available, anonymized chest X-ray repositories, including the COVID-19 Radiography Database and the Montgomery County and Shenzhen Tuberculosis chest X-ray datasets released by the U.S. National Library of Medicine. No personally identifiable information is included in this repository.

All data are released under the Creative Commons Attribution 4.0 International (CC BY 4.0) license and are intended to support open research, reuse, and further development of computer-aided diagnostic methods for medical imaging.
DOI: 10.5281/zenodo.17378867
title: Supporting files for: Sensitivity of dynamical downscaling in the Northern Adriatic Sea

description: Supporting files for the article “Sensitivity of dynamical downscaling in the Northern Adriatic Sea,” accepted for publication in Journal of Geophysical Research: Oceans.

Contents:  - NEMO_exps_configs/: NEMO configuration files, including namelists, bathymetry, and mask files for all experiments; also includes the Python filtering procedure used to generate L2F.  - DWF_analysis/: Fortran code and outputs for the dense water formation (DWF) analysis.  - EKE_analysis/: MATLAB routines and outputs for power spectral density (PSD) analysis of eddy kinetic energy (EKE).  - salinity_2012/: Surface and 150 m salinity fields for large domain (Adriatic) experiments for the year 2012.
DOI: 10.5281/zenodo.17378868
title: Supporting files for: Sensitivity of dynamical downscaling in the Northern Adriatic Sea

description: Supporting files for the article “Sensitivity of dynamical downscaling in the Northern Adriatic Sea,” accepted for publication in Journal of Geophysical Research: Oceans.

Contents:  - NEMO_exps_configs/: NEMO configuration files, including namelists, bathymetry, and mask files for all experiments; also includes the Python filtering procedure used to generate L2F.  - DWF_analysis/: Fortran code and outputs for the dense water formation (DWF) analysis.  - EKE_analysis/: MATLAB routines and outputs for power spectral density (PSD) analysis of eddy kinetic energy (EKE).  - salinity_2012/: Surface and 150 m salinity fields for large domain (Adriatic) experiments for the year 2012.
DOI: 10.17909/0qd3-x220
title: Data from Shedding the envelope: JWST reveals a kiloparsec-scale [Oiii]-weak Balmer shell around a z=7.64 quasar

description: Luminous quasars at the redshift frontier z > 7 serve as stringent probes of super-massive black hole (SMBH) formation and they are thought to undergo much of their growth obscured by dense gas and dust in their host galaxies. Fully characterizing the symbiotic evolution of SMBHs and hosts requires rest-frame optical observations that span spatial scales  from the broad-line region (BLR) to the interstellar and circumgalactic medium (ISM/CGM). The James Webb Space Telescope (JWST) now provides the necessary spatially resolved spectroscopy to do so. But the physical conditions that regulate the interplay between SMBHs and their hosts at the highest redshifts, especially the nature of early feedback phases, remain unclear. We present JWST/NIRSpec Integral Field Unit (IFU) observations of J0313−1806 at z = 7.64, the most distant luminous quasar known. From the restframe optical spectrum of the unresolved quasar, we derive a black hole mass of MBH = (1.63 ± 0.10) × 10^9 M⊙ based on Hβ λ4861 (Hβ) and an Eddington rate of λ = L/LEdd = 0.80 ± 0.05, consistent with previous Mg II λ2800-based estimates. J0313–1806 exhibits no detectable [O III]λλ4959, 5007 emission on nuclear scales (3σ upper limit equivalent width of [O III] λ5007 < 1.42 Å). Most remarkably, we detect an ionized gas shell extending out to ∼ 1.8 kpc traced by Hβ emission that also lacks any significant [O III]λλ4959, 5007, with a
3σ upper limit on the [O III]λ5007 to Hβ flux ratio of log10 (F([OIII])/F(Hβ)) = −1.15. Through photoionization modelling, we
demonstrate that the extended emission is consistent with a thin, clumpy outflowing shell where [O III] is collisionally de-excited by dense gas. We interpret this structure as a fossil remnant of a recent blowout phase, providing evidence for episodic feedback cycles in one of the earliest quasars. These findings suggest that dense ISM phases may play a crucial role in shaping the spectral properties of quasars accross cosmic time.
DOI: 10.21227/je7z-1t83
title: "Surrogate-Guided Constrained Optimization of Ultra-Scaled MoS\u2082 FET Designs"

description: "This repository provides a fully reproducible end-to-end pipeline for constrained MoS\u2082 FET device design optimization, combining a physics-inspired compact oracle, leak-free surrogate modeling, and surrogate-guided search.The code accompanies the paper:Surrogate-Guided Constrained Optimization of Ultra-Scaled MoS\u2082 FET Designs under Strict Manufacturability ConstraintsYoula Yang, Indiana University Bloomington (2025)"