cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/p9z-78e-1bs
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24711213.v1
title: Untitled project

description: Albinism is a unique problem encountered in tissue culture experiments, but the underlying mechanism remains unclear in most bamboo species. In this study, we identified the putative regulatory genes in an albino mutant of Bambusa oldhamii using comparative physiology and transcriptome analysis. The degeneration of chloroplasts, low chlorophyll (Chl) content and re-duced photosynthetic capacity were observed in albinotic B. oldhamii compared to normal lines. A total of 6191 unigenes were identified that were clearly differentially expressed between albino and normal lines by transcriptome sequencing. Most genes related to chloroplast development (such as Psa, Psb) and pigment biosynthesis (such as LHC, GUN4, ZEP) were downregulated significantly in albinotic lines, which might be responsible for the albino phenotype. Moreover, some transcription factors (TFs) such as PIF and GLK1 were identified to be involved in chloroplast development and Chl synthesis, indicating the involvement of putative regulatory pathways PIF-LHC and GLK1-LHC/Psa/Psb in albinotic B. oldhamii. Finally, the downregulation of some stress responsive TFs (like ICE1 and EREB1) suggested a reduction in stress resistance of albinotic B. oldhamii. The above findings provided new insights into the molecular mechanism of albinism in bamboo.
DOI: 10.3535/hta-0g9-gp9
title: Wulfenite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14922750.v1
title: RAB7 activity is required for the regulation of mitophagy in oocyte meiosis and oocyte quality control during ovarian aging

description: There is increasing evidence that mitophagy, a specialized form of autophagy to degrade and clear long-lived or damaged mitochondria, is impaired in aging and age-related disease. Previous study has demonstrated the obesity-exposed oocytes accumulate and transmit damaged mitochondria due to an inability to activate mitophagy. However, it remains unknown whether mitophagy functions in oocyte and what’s the regulatory mechanism in oocyte aging. In the study, when fully grown oocytes were treated with CCCP, an uncoupling agent to induce mitophagy, we found the activation of the PRKN-mediated mitophagy pathway accompanied the blockage of meiosis at metaphase I stage. Our result then demonstrated its association with the decreased activity of RAB7 and all the observed defects in CCCP treated oocytes could be effectively rescued by microinjection of mRNA encoding active RAB7<sup>Q67L</sup> or treatment with the RAB7 activator ML098. Further study indicated PRKN protein level as a rate-limiting factor to facilitate degradation of RAB7 and its GEF (guanine nucleotide exchange factor) complex CCZ1-MON1 through the ubiquitin-proteasome system. In GV oocytes collected during ovarian aging, we found the age-related increase of PINK1 and PRKN proteins and a significant decrease of RAB7 which resulted in defects of mitophagosome formation and the accumulation of damaged mitochondria. The age-related retardation of female fertility was improved after in vivo treatment of ML098. Thus, RAB7 activity is required to maintain the balance between mitophagy and chromosome stability and RAB7 activator is a good candidate to ameliorate age-related deterioration of oocyte quality. <b>Abbreviations:</b> ATG9: autophagy related 9A; ATP: adenosine triphosphate; CALCOCO2/NDP52: calcium binding and coiled-coil domain 2; CCCP: carbonyl cyanide 3-chlorophenylhydrazone; CCZ1: CCZ1 vacuolar protein trafficking and biogenesis associated; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; GAPs: GTPase-activating proteins; GEF: guanine nucleotide exchange factor; GV: germinal vesicle; GVBD: germinal vesicle breakdown; LAMP1: lysosomal-associated membrane protein 1; MI: metaphase I stage of meiosis; MII: metaphase II stage of meiosis; Mito: MitoTracker; mtDNA: mitochondrial DNA; MON1: MON1 homolog, secretory trafficking associated; OPTN: optineurin; PINK1: PTEN induced putative kinase 1; PRKN: parkin RBR E3 ubiquitin protein ligase; RAB7: RAB7, member RAS oncogene family; ROS: reactive oxygen species; TEM: transmission electron microscopy; TOMM20/TOM20: translocase of outer mitochondrial membrane 20; TUBB: tubulin, beta; UB: ubiquitin.
DOI: 10.3535/t20-d98-y0f
title: Conochitina claviformis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y73-ary-ckh
title: Olivine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26090950.v1
title: Data from Littlefield et al. 2024. Frontiers in Ecology and the Environment

description: Datasets used in the analysis of elk habitat selection and migratory movements described in:Littlefield et al. 20204. Evaluating and Elevating the Role of Wildlife Road Crossings in Climate Adaptation. <i>Frontiers in Ecology and the Environment</i>Organization: Conservation Science Partners, IncContact: Dr. Justin Suraci (justin@csp-inc.org)See README.txt file for details of the datasets included here.
DOI: 10.3535/11e-n60-3fk
title: Eisenackitina sp. sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5d1-w46-h0b
title: Bismuth

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3551517.v1
title: Appendix A. Yield per plot vs. number of species for the Biodepth Ireland experiment.

description: Yield per plot vs. number of species for the Biodepth Ireland experiment.
DOI: 10.3535/b7x-q8e-z6s
title: Pyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g6c-tw2-6n8
title: Kaolinite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24460732.v1
title: Short-Term Hypercaloric Carbohydrate Loading Increases Surgical Stress Resilience by inducing FGF21

description: Dietary restriction promotes resistance to acute surgical stress in multiple organisms. Counterintuitively, current medical protocols recommend short-term carbohydrate-rich drinks (carbohydrate loading) prior to surgery, part of a multimodal perioperative care pathway designed to enhance surgical recovery. Despite widespread clinical use, preclinical and mechanistic studies on carbohydrate loading in surgical contexts are lacking. Here we demonstrated in ad libitum-fed mice that liquid carbohydrate loading for 1 week drives reductions in solid food intake, while nearly doubling total caloric intake independently of the sex. Similarly, in humans, simple carbohydrate intake was inversely correlated with dietary protein intake. Carbohydrate loading-induced protein dilution increased expression of hepatic fibroblast growth factor 21 (FGF21) independent of caloric intake, resulting in protection in two models of surgical stress: renal and hepatic ischemia-reperfusion injury. The protection was consistent across male, female, and aged mice. In vivo, amino acid add-back or genetic FGF21 deletion blocked carbohydrate loading-mediated protection from ischemia-reperfusion injury. Finally, carbohydrate loading induction of FGF21 was associated with the induction of the canonical integrated stress response (ATF3/4, NF-kB), and oxidative metabolism (PPARγ). Together, these data support carbohydrate loading drinks prior to acute surgical stress and revealed an essential role of protein dilution via FGF21.

Data contain :
- Bulk RNA sequencing dataset of kidney after 1 week of carbohydrate loading diets.
- Complete tables for reproducibility of the WGCNA analysis.
- All R scripts associated with the corresponding figures present in the study.
DOI: 10.17632/f6frsby8hr
title: LINF_090013500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.3535/gft-x7e-z37
title: Native Amalgam

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gm5-tty-zz4
title: Native Amalgam

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10251068.v3
title: Russell et al_AJP Cell Physiol data

description: Raw data for manuscript titled "Cardiomyoblast caveolin expression: Effects if siulated diabetes, alpha-linolenic acid and cell signaling pathways" submitted to AJP - Cell Physiol.
DOI: 10.6084/m9.figshare.11440698.v2
title: R Notebook PDF

description: R Notebook for Nord et al (in prep) Tolerance of muzzle contact underpins the acquisition of foraging information in vervet monkeys (Chlorocebus pygerythrus) <br>
DOI: 10.17632/44ck38v88k
title: Hery Budiawan

description: my article with title: Humanities Education
DOI: 10.3535/mv4-ecl-aq5
title: Conochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n53-lay-3wx
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22774472.v1
title: Original Data

description: <sup>1</sup>H-NMR and <sup>13</sup>C-NMR spectra of S/R-CNB and their intermediate products. <sup>1</sup>H-NMR, <sup>19</sup>F-NMR and <sup>13</sup>C-NMR spectra of DG and its intermediate products. <sup>1</sup>H-NMR, <sup>19</sup>F-NMR and <sup>13</sup>C-NMR spectra of DR. Raw files simulating the optimal conformation and calculating the first excited states of S-CNB, DG, and DR by Gaussian 09.
DOI: 10.3535/k1j-s7b-871
title: Linochitina sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/td2-lp7-bk2
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/krn-lar-km9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t16-q7w-y0m
title: Sulfur

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.jbtzwk
title: Occurrence Download

description: A dataset containing 220401 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Usnea Dill. ex Adans., 1763"
 ]
}

 The dataset includes 220401 records from 757 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009674-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/sk5jhk6s8s
title: Data for: An improved neural network for TOC, S1 and S2 estimation based on conventional well logs
DOI: 10.3535/nm6-fad-6rn
title: Calpichitina cf.  densa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qdl-j9m-r62
title: Conochitina argillophila

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bxk-kyf-12e
title: †Eoplectodonta Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wzd-7vr-esv
title: Conochitina aff. proboscifera

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d263
title: Ex13R51 Synapsin1-2 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.3535/16q-0n9-sfc
title: Clathrochitina cf. clathrata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/88n-fev-btz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21030304.v1
title: Supplemental Table S6

description: <strong>Fecal cholesterol and triglyceride</strong> levels of the cofee supplemented B6/129 mice.
DOI: 10.17632/spvyfn5nt3
title: Inflammatory eye disease in patients with hidradenitis suppurativa: a systematic review

description: Hidradenitis suppurativa (HS) is a chronic inflammatory skin condition presenting with recurrent abscesses and nodules, often in intertriginous regions. Patients diagnosed with HS often experience comorbid disease of inflammatory or autoimmune etiology. This systematic review identifies and summarizes inflammatory eye disease in HS patients, and subsequent response to immunosuppressive therapy.
DOI: 10.17632/xvhp2w5m2x
title: RGF for low-light enhancement

description: Low-light Image Enhancement with Regularized Gaussian Fields Model
DOI: 10.3535/7rp-xt8-hcw
title: Conchicolites crispisulcans

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j4q-794-r5c
title: †Lophospira Whitfield, 1886

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22815908.v1
title: Wildfire strains characterization

description: Characterization and screening of strains
DOI: 10.6084/m9.figshare.26885947.v1
title: Post appointmentdiscussion- updated.docx

description: Dataset for the student workbook study<br>
DOI: 10.6084/m9.figshare.4903295.v6
title: A large-scale data-based investigation on the relationships between real-time weather and taxi tipping for perceived service

description: This dataset includes taxi tipping data and the SAS codes to apply the non-proportional odds model.
DOI: 10.3535/aqy-v5d-3k2
title: Lazurite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/av8-en2-7p4
title: †Bucanella Meek, 1871

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vnv-jtn-b67
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28565639.v1
title: nano-antibody and peptide topology

description: Nb60, Nb65 and peptide 6 topology
DOI: 10.15468/dl.qx6ygv
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Canis lupus Linnaeus, 1758, Panthera pardus (Linnaeus, 1758))",
 "Year 2000-2024"
 ]
}

 The dataset includes 257 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009681-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/dt2-8c6-gqc
title: Rhodochrosite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/py6-jq6-fex
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.8052725.v1
title: Genome-wide detection of genetic loci and candidate genes for teat number and conformation traits at birth in Chinese Sushan pigs

description: The phenotypes and genotypes for Sushan pigs
DOI: 10.6084/m9.figshare.9981728.v1
title: Ant activity (walking or stopping)

description: <b>Are the ants are walking or stoping?</b><b>column 1: </b>id of the experiment<b>column 2</b>: time (s)<b>column 3</b>: walking (1) or stopping (0)<br><b></b>
DOI: 10.3535/2fd-cy0-ab3
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w41-gxz-r0x
title: †Straparollus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/34d9fjjng8
title: Use of Sulfasalazine for Psoriasis: An Evidence-Based Review

description: Psoriasis is a chronic T-helper (Th)-1/Th-17 mediated inflammatory disease which often requires systemic therapy for skin clearance. Sulfasalazine is an anti-inflammatory medication comprised of sulphapyridine and 5-aminosalicylic acid and is used in many immune-mediated systemic and skin-limited diseases. Despite having a favourable adverse effect profile and efficacy demonstrated in small randomized trials, it is currently off-label for treatment of psoriatic arthritis and plaque psoriasis in North America. We performed a systematic review to assess outcomes of sulfasalazine for cutaneous psoriasis.
DOI: 10.17632/96zrthhy8x
title: PBM Data for Hybrid Lithium-ion Modelling

description: This data includes a reduced order P2D lithium ion battery model features for standard driving test cycles. Alongside with this, experimental and Full Order Model SoC estimations are included, as well as momentary field information like test step and time.
DOI: 10.17632/sxd8kmzp8r
title: Data for: Exploring Why Global Health Needs Are Unmet by Public Research Efforts: The Potential Influences of Geography, Industry, and Publication Incentives

description: Additional File 2 provides the data behind the graphs in the associated article, which compares publications and disease burden statistics. Additional File 3 provides a correspondence table between diseases as defined by the International Classification of Disease (10) and Medical Subject Heading (MeSH) in the bibliographic database MEDLine.
DOI: 10.17632/vfd47jgr8t
title: Tapasin assembly surveillance by the RNF185/MBRL ubiquitin ligase complex regulates MHC-I surface expression

description: Raw western blot data for each manuscript figure
DOI: 10.3535/0kd-19b-0p0
title: †Straparollus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7nm-95r-gsb
title: Ancyrochitina cf. brevispinosa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12950978.v1
title: Pictures of formulated colourless agar and LB Lennox agar without microbial culture

description: This dataset comprises pictures of a formulated colourless agar in comparison with those of LB Lennox agar. Both types of agar were without microbial culture. The objective was to demonstrate that the formulated colourless agar delivered higher colour contrast compared to the beige coloured LB Lennox agar. Details of the formulated colourless agar could be found at “Colourless agar for enhancing colour contrast between microbial colonies and agar” at <i>PeerJ Preprints</i>.
DOI: 10.6084/m9.figshare.23664423.v2
title: Orphan protein sequences - 11444

description: Protein sequences of 11,444 filtered orphan proteins with high-confidence ESM predicted structures
DOI: 10.6084/m9.figshare.c.3931711_d5.v1
title: Additional file 5: of Trends in bednet ownership and usage, and the effect of bednets on malaria hospitalization in the Kilifi Health and Demographic Surveillance System (KHDSS): 2008–2015

description: Sensitivity analysis: Incidence of malaria hospitalization (parasitemia &gt; 2500) among children
DOI: 10.17045/sthlmuni.5938246.v1
title: Open Access status of articles at Stockholm University 2012-2017

description: This dataset contains free to read/open access status of scholarly journal articles from Stockholm University (Sweden) published between 2012-2017. The data published in xlsx and csv format. Only journal articles with a known DOI are included. The status of free/open access of the articles were checked manually and then compared to the Unpaywall/oaDOi database (https://unpaywall.org/data) in February 2018. The data was fetched with the help of the Unpaywall/oaDOI API: https://unpaywall.org/api/v2<br>Definitions of the columns in the data file:<br><b>Article:</b>DOI: DOI id of the ariclesu:DIVA PID: id of the article in the Stockholm University publication database (DiVA: http://su.diva-portal.org/)Journal: Name of the artcleYear: Publication year<br><b>Manually checked data:</b>Free to read at publisher homepage: 1 if the full-text of the article is free to read without registration at the publisher's homepageOA: 1 if the article has some kind of OA licenseLicense: Specification of the OA license (type of Creative Commons license, or "Other license"Gold OA journal: 1 if the journal is fully open accessPublisher: name of the publisher<br><b>Data from oaDOI</b>DOI found in oaDOI: 1 if the DOI is found in the oaDOI databaseoaDOI found something open: 1 if the oaDOI database found an open version availableFree to read at publisher homepage according to oaDOI: 1 if there is a free to read available version at the publisher's homepage according to oaDOIOA at publisher according to oaDOI best locationoaDOI best location: best free location according to oaDOIoaDOI data_standard: 1 or 2 according to oaDOI oaDOI license: license from the oaDOI databaseoaDOI license (standardized format): license type converted to the format of the column "License". License types other than Creative Commons are categorized as "Other license".<br>Note: since many things were checked manually/half-automatically, some errors are inevitable. Furthermore all data was only accurate at the time of the check.
DOI: 10.3535/btf-j6b-jh1
title: Janiosteus timanicus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12909551.v2
title: series1_GSE147507: Differential gene expression of NHBE Cells (MOI 2.0) SARS-CoV-2 vs Mock control

description: Differentially expressed genes between SARS-Cov-2 (MOI 2.0) infected vs Mock control from NHBE cells with fold change, raw counts and normalized counts for each gene.<br> RNA-Seq reads (FASTQ) of biological triplicates from primary human bronchial epithelial (NHBE) cells, mock treated or infected with SARS-CoV-2 (USA-WA1/2020) (series1_GSE147507) were downloaded from NCBI SRA and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were aligned to the human genome (hg38) with annotations (Ensemble v91) and then quantification and differential expression of genes between SARS-Cov-2 infected vs. mock control samples was performed. The differentially expressed genes were filtered by FDR P-value&lt;0.05 and uploaded here. <br>
DOI: 10.6084/m9.figshare.14458908.v1
title: AHBA Gene expression

description: This is a .mat file, which contains part of Allen Human Brain Atlas; it is an object and it can be easily analyzed with this code https://github.com/vrubino/Genes_expression .The data are from Allen Brain Atlas https://alleninstitute.org/
DOI: 10.6084/m9.figshare.28015535.v1
title: Data_Explo Moths FD PD 2024

description: Data for peer review