cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21789026.v1
title: Effects of Ganoderma lucidum on Corneal Ulceration_Raw Data.csv

description: Background: This dataset uploaded for public view on this repository are results/data of an experimental animal study conducted to investigate the pharmacological effect of <em>Ganoderma Lucidum (G. lucidum)</em>. Corneal ulcerations pose risks to blindness, and their treatment presents huge challenges, in part due to increased resistance to anti-bacterial drugs, accessibility, and cost issues, particularly in developing countries. This study investigated the pharmacological effect of <em>Ganoderma Lucidum (G. lucidum)</em>, on chemical-induced and bacterial-infected corneal ulceration of rabbits’ eyes. Methods: This was a randomized-controlled experiment of 16 healthy New Zealand rabbits, randomly assigned into four groups (A – D). The right eye cornea was injured using a drop of 1 molar sodium hydroxide and followed by infection with <em>Pseudomonas aeruginosa</em> after 12 hours, in all groups except group A. Treatment with freshly prepared crude aqueous extract of <em>G. lucidum </em>(40μg/ml) for groups A and B, the standard treatment protocol for group C, and atropine alone for group D commenced after 24 hours and continued every four hours for seven days. All data collected, pre- and post-tests, were analysed at α = 0.05 using Wilcoxon signed-rank test for correlated variables and the Mann-Whitney U test for independent variables. All methods applied in this study adhered to the Committee on Animal Research and Ethics’ guideline for ethical conduct in the care and use of animals, including responsible and ethical disposal of animals during clinical and laboratory research. Results: <em>G. lucidum</em> has significant clinical effects (74%) on corneal injury and ulcers (92%). The healing effects observed at the 168th hour were significantly better than those observed at the 24th hour (<em>p </em>&lt; 0.05). Although the difference between the healing effect of the standard treatment and the crude extract was not significant (<em>p </em>&gt; 0.05), the mean effect size was clinically significant (31%). Conclusion: This study demonstrates the potential antimicrobial potential of <em>G. lucidum</em>. <em>G. lucidum</em> which may provide an alternative treatment option for chemical-induced and bacterial-infected corneal ulcers, particularly in resource-constrained countries.
DOI: 10.6084/m9.figshare.22591687
title: Supplementary Material for: Skin Tests versus Serology: Specific IgE May Suffice for Diagnosis of Vespid Venom Allergy and Follow-Up of Allergen Immunotherapy

description: <b><i>Introduction:</i></b> In adults, allergic reactions to insect stings are among the most frequent causes of anaphylaxis, a potentially life-threatening condition. Recurrent anaphylaxis following vespid stings may be prevented by allergen immunotherapy (AIT). The aim of this study was to evaluate the benefit of measuring venom-induced wheal area in intracutaneous skin tests (ICT), in comparison to various serological and clinical parameters, for the diagnosis of severe vespid venom allergy and during follow-up of AIT. <b><i>Methods:</i></b> We conducted a monocentric, retrospective evaluation of 170 patients undergoing AIT against vespid venoms. We scanned ICT wheals at baseline and at three time points after AIT initiation and measured wheal area using objective data analysis software. <b><i>Results:</i></b> We found that ICT histamine-induced and venom-induced wheal areas did not correlate. In addition, the venom-induced wheal area was independent from the minimal venom concentration required to elicit a wheal in an ICT and all other parameters. No correlation was found between wheal area and the severity of anaphylaxis. Wheal area standardized to the application of 0.1 μg/mL venom inversely correlated with anaphylaxis severity and positively correlated with venom-specific IgE levels. During AIT, mean areas of venom-induced wheals did not change. In contrast, venom-specific IgG and IgG4 levels, and the minimal venom concentration required to induce a positive ICT result increased, while the venom wheal area standardized to 0.1 μg/mL venom application and specific IgE levels decreased over time. <b><i>Conclusion:</i></b> Wheal area evaluation did not provide additional information over specific IgE analysis. We therefore recommend that ICTs are used only as a secondary measure for confirming serological test results.
DOI: 10.17632/d43r5ydpx8.1
title: DEC17 ARESG2 Human Blood Rheology: SS, SAOS, LAOS, STEPS, etc.

description: DEC17 human blood rheology data collected with ARESG2: SS, SAOS, LAOS, Steps, etc.
DOI: 10.17632/jdzpx6hy6r.1
title: FEB18 Blood Rheology ARESG2 SS SAOS LAOS STEP

description: This is SS, SAOS, LAOS, Step human blood rheology data collected with ARESG2
DOI: 10.17632/s8w6s6f68b.1
title: JUL18 Human blood rheology

description: SS, SAOS, LAOS, Triangle Ramp, UDLAOS
DOI: 10.5291/ill-data.9-11-1895
title: Self similar dynamics of ring polymers
DOI: 10.5523/bris.1nz94wvrfzzdo1d67et0t4v4nc
title: PGOPHER version 9.1

description: PGOPHER is a general purpose program for simulating and fitting rotational, vibrational and electronic spectra. Included here are executables, source code, documentation and sample files for version 9.1.100 of the PGOPHER program. This is an update for version 8.0.102, also available in this repository Please also see the program web site, http://pgopher.chm.bris.ac.uk/. The program is open source, and covered by the LGPL. The documentation and other files are covered by the University of Bristol repository's Non-Commercial Government License, except where explicitly noted.
DOI: 10.6084/m9.figshare.23523255
title: Supplementary Material for: Assessment of spin in the abstracts of randomized controlled trials in dental caries with statistically nonsignificant results for primary outcomes: A methodological study

description: The study aimed to assess the prevalence of spin in the titles and abstracts of RCTs in dental caries with statistically nonsignificant primary outcomes and to assess the risk indicators which may be associated with spin. Any original publication reporting a two-arm RCT in dental caries with clearly identified statistically nonsignificant primary outcomes published from January 1, 2015 until October 28, 2022 were included. PubMed was searched electronically to identify the eligible publications. The prevalence of spin in titles and abstracts were assessed and categorized into spin patterns based on a pre-determined classification scheme. The association between spin and the potential risk indicators at study, author, journal, institutional, and national level was assessed. A total of 234 eligible RCT publications were included. The prevalence of spin in the titles and abstracts was 3% (95%CI: 2% to 6%) and 79% (95%CI: 74% to 84%), respectively. The most common spin patterns in the results and conclusion sections, respectively, were results focusing on statistically significant within-group comparisons (23%), and conclusions focusing only on statistically significant results without acknowledgment of statistically nonsignificant results for the primary outcomes (26%). The spin was significantly associated with number of study centers (single-center vs. multicenter) (OR=2.131; 95%CI: 1.092 to 4.158; P=0.03), trial designs (non-parallel designs vs. parallel designs) (OR=0.395; 95%CI: 0.193 to 0.810; P=0.01), and overall H index of institutions for last authors (OR=0.998; 95%CI: 0.996 to 0.999; P&lt;0.01), while it was not significantly associated with the other indicators. In the RCT publications with statistically nonsignificant results for primary outcomes in dental caries, the prevalence of spin may be low in the titles but high in the abstracts. Single-center studies with parallel designs and a lower overall H index of institutions for last authors may be more likely to have spin in the abstracts.
DOI: 10.6084/m9.figshare.23904408.v1
title: <b>A database about spawning behavior of freshwater fish</b><b> species</b><b> in China</b>

description: Fish species in freshwater habitats play an important role in maintaining the health of freshwater ecosystems and providing nutrition for human society, but are especially vulnerable to the impacts of human activities represented by dam constructions. Although the extensive research on the taxon and occurrence of freshwater fish species in China has been well conducted, freshwater fish conservation still eagerly require datasets related to reproductive habits. In this paper, based on a list of 1,384 freshwater fishes species in China, underlying spawning behavior data were extracted from published papers（n=1,020）, monographs and reports（n=63）, data-sharing websites（n=7） and disposaled in a standardised way to form a national scale database. The focus of this database mainly including spawning seasons, spawning temperature, diameter and properties of fish eggs, incubation conditions and migratory habits. This database represents a highly valuable source of information for further studies on numerical simulation of freshwater ecosystem and conservation of freshwater fish diversity.
DOI: 10.17632/4c4dshr2mb.1
title: RISE: Sea-Level and Atmospheric Patterns

description: These are data used in: 
Lee, C.C., Sheridan, S.C., Dusek, G.P., Pirhalla, D.E. (2022):Atmospheric circulation patterns and sea-level variability: Assessing S2S predictability. (Manuscript currently in peer-review).
Data can be used with proper attribution

All files are Matlab-readable files. 
ANN = Artificial Neural Network

FILES:
AllTeleDataNew.mat - Teleconnections Data used in the research
AltNets_CP-Both.mat - the saved ANN models for the PLANN forecasts used in the research
CFSv1_ReforecastNEW_Mo0.mat - the reforecast data from CFSv1 (From 1982-March 2011) used in the research. Mo0 indicates that the first month listed is the month of initialization (i.e. Month/Lead =0)
CFSv2_ReforecastNEW_Mo0.mat - the reforecast data from CFSv2 (Since April 2011) used in the research. Mo0 indicates that the first month listed is the month of initialization (i.e. Month/Lead =0)
ERA5_All6vars_1950-2019_RESAMP.mat - the resampled monthly-scale climate variables from ERA5 (from ECMWF) used in the research. (note: only SLP, u-wind & v-wind components are used, though other variables are included in this file).
MonthlyDeaseasonedDetrended_RegSOMs_FINAL.mat - the saved ANN models for the Self-Organizing Map (SOM) clustering that was used for the SLP circulation patterns (CPs) and 10-m wind patterns (WPs) used in the research
TideFIN.mat - the tide gauge data used in this research
Trained_20_NARX_RegSOM_Networks_FINAL.mat - the saved Nonlinear AutoRegressive models with exogenous input (NARX models) used in this research
DOI: 10.21227/gg33-sm32
title: Temperature control for Newton’s Law of Cooling using PID Controller

description: In this paper, a PID controller is applied to control the temperature to a proposed model derived of the Newton’s law of cooling. The control problem considers a second-order model obtained that the rate at which the temperature of a body decreases with time is proportional to the difference in temperature between the body and its surroundings. This model representsa mathematical function the device's output for each possible input with initial conditions zero. The necessary conditions for the asymptotic stability of the proposed controller are validated by implementing the Lyapunov stability theorem. The theoretical concepts are validated utilizing numerical simulations and analysis, which proves the effectiveness of the PID controller for temperature of the system.
DOI: 10.4226/86/59278ab872838
title: FITS Viewer and VMI analysis
DOI: 10.5281/zenodo.1170597
title: Alexandria Library

description: The Alexandria library is as an open access quantum-chemical database containing optimized molecular structures, frequencies, thermochemistry, polarizability and electrostatic moments for organic and inorganic molecules. The name Alexandria highlights that we aim to collect "all" knowledge in the world, old and new, on molecular properties, just like the legendary library of Alexandria, since availability of data rapidly declines with time. This library will assist systematic development and training of empirical force fields for a broad range of molecules.
description: The Swedish research council is acknowledged for financial support to DvdS (grant 2013-5947) and for grants of computer time (SNIC2015-16-33, SNIC2016-34-44) through the High Performance Computing Center North in Umeå, Sweden.
DOI: 10.5281/zenodo.2671608
title: WWBS Metrics

description: The dataset consists of recordings acquired from a sensorized WWBS smart-vest garment (developed by the project's partner SMARTEX), which the older adults wear during their daily routine.

The garment is equipped with electrodes for ECG monitoring, a piezoresistive sensor for respiration monitoring, and Inertial Measurement Units (IMUs) for movement and posture monitoring.

Each recording consists of a series of channels, and each recording channel is a pair of [Timestamp, Value] columns.

The full list of recording channels is described below:

<strong>- Part_id</strong>: User ID, a 4-digit number, serving as the file name for each user's data

- <strong>ECG</strong>: Electric signal measuring the ECG (value: 0.8 mV - sampling rate: 250Hz)

- <strong>ECGquality</strong>: ECG signal quality (value: 0-255 where 0=poor and 255=excellent - sampling rate: 1/5 sec)

- <strong>ECGHR</strong>: Heart rate (value: Beats/minute - sampling rate: 1/5 sec)

- <strong>ECGRR</strong>: R-R intervals (value: number of samples between R-R peaks - sampling rate:1/5 sec)

- <strong>ECGHRV</strong>: Heart rate variability (value: ms - sampling rate: 1/60 sec)

- <strong>AccX-Y-Z</strong>: Accelerometer in X-Y-Z axes (value: 0.97 10-3 g - sampling rate: 25 Hz)

- <strong>GyroX-Y-Z</strong>: Gyroscope in X-Y-Z axes (value: 0.122 °/s - sampling rate: 25 Hz)

- <strong>MagX-Y-Z</strong>: Magnetometer in X-Y-Z axes (value: 0.6 µT - sampling rate: 25 Hz)

- <strong>RespPiezo</strong>: Electric signal measuring the chest pressure on the piezoelectric point (value: 0.8 mV - sampling rate: 25 Hz)

- <strong>RespQuality</strong>: Respiration signal quality (value: 0-255 where 0=poor and 255=excellent - sampling rate: 1/5 sec)

- <strong>BR</strong>: Breathing rate (value: Breaths/minute - sampling rate: 1/5 sec)

- <strong>BA</strong>: Breathing Amplitude (value: logic levels - sampling rate: 1/15 sec)

- <strong>Activityenergy</strong>: estimation of energy activity (value: estimation where 0=no activity and 255=max of activity - sampling rate: 1/5 sec)

- <strong>Activityclass</strong>: Activity performed (value: 0-4 where 0=other, 1=lying, 2=standing/sitting, 3=walking and 4=running - sampling rate: 1/5 sec)

- <strong>Activity1Pace</strong>: Step period (value: ms- sampling rate: 1 Hz)

- <strong>ActivityPace</strong>: Pace (value: steps/min - sampling rate: 1/5 sec)

- <strong>Q0-Q1-Q2-Q3</strong>: Quaternions from main electronic device, i.e. Q0, Q1, Q2, Q3 components (value: Q14 format - sampling rate: 25 Hz)

- <strong>QEL0-QEL1-QEL2-QEL3</strong>: Quaternions from external left arm device, i.e. Q0, Q1, Q2, Q3 components (value: Q14 format - sampling rate: 25 Hz)

- <strong>QER0-QER1-QER2-QER3</strong>: Quaternions from external right arm device, i.e. Q0, Q1, Q2, Q3 components (value: Q14 format - sampling rate: 25 Hz)
DOI: 10.5281/zenodo.3820297
title: Models and source data for MuML dipole fitting

description: Source data, models, and scripts necessary to reproduce the results of: "Predicting molecular dipole moments by combining atomic partial charges and atomic dipoles" (M. Veit, D. M. Wilkins, Y. Yang, R. A. DiStasio Jr., M. Ceriotti, arXiv: 2003.12437). The model is a combination of symmetry-adapted Gaussian process regression (SA-GPR) for atomic dipoles and scalar GPR for atomic partial charges, which are fit together to reproduce the molecule's total dipole moment. Source data, kernel matrices, weights, residuals, and scripts for fitting and plotting the results are included.
DOI: 10.5281/zenodo.7148018
title: Triple-resolution of spectral phases via semi-relativistic ab-initio RABBITT simulations DATA & WORKFLOW

description: This dataset contains the necessary atomic structure and input files to use the R-Matrix with Time-dependence code suite (open source and freely available) to replicate the results presented in "Triple-resolution of spectral phases via semi-relativistic ab-initio RABBITT simulations". Additionally, the output photoelectron momentum spectra data output from the RMT simulations are provided, to allow replication of the post-processing and spectral phase extraction processes in the absence of access to a large HPC cluster. Finally, a link is provided to a git repository hosted on gitlab.com where post-processing, spectral phase extraction, and visualisation tools are available to operate on these momentum spectra, and an interactive example is provided via a webhosted (via mybinder) Python Jupyter notebook.
DOI: 10.5281/zenodo.806088
title: Modelled Time Series Of Co2 In The Vicinity Of A Seep In The North Sea.

description: The Bergen Ocean Model (BOM) is used to simulate dispersion of CO2 leaking from nine different locations in the North Sea, focusing on temporal and spatial variability of the CO2 concentration. 

For details see: Ali, A., Frøysa, H. G., Avlesen, H., & Alendal, G. (2016). Simulating spatial and temporal varying CO 2signals from sources at the seafloor to help designing risk-based monitoring programs. <em>Journal of Geophysical Research-Oceans</em>, <em>121</em>(1), 745–757. http://doi.org/10.1002/2015JC011198.

The data files contains time series of excess CO2 concentration, velocity components and time, and position in longitude and latitude. One file for each grid position, a total of 53x51 grid points with the seep in location (I,j)=(28,27).
description: In addition to funding from EU. This work has received funding from the Research Council of Norway, through the CLIMIT program (project no 254711) and the SUCCESS center for CO2 storage (grant 193825/S60)
DOI: 10.5291/ill-data.6-04-275
title: Impact of Nano-Structuration on the alpha-Relaxation: Collective and Self-Motions of Melt Systems Composed by Single-Chain Nano-Particles
DOI: 10.6084/m9.figshare.21724385.v1
title: Raw data.xlsx

description: Raw data for the results and statitsics
DOI: 10.7488/ds/2846
title: Phase behaviour of the quantum Lennard-Jones solid
title: Input files and data for "Phase behaviour of the quantum Lennard-Jones solid"

description: The Lennard-Jones potential is perhaps one of the most widely-used models for the interaction of uncharged particles, such as noble gas solids. The phase diagram of the classical LJ solid is known to exhibit transitions between hcp and fcc phases. However, the phase behaviour of the quantum Lennard Jones solid remains unknown. Thermodynamic integration based on path integral molecular dynamics and lattice dynamics calculations are used to study the phase stability of the hcp and fcc Lennard Jones solids. The hcp phase is shown to be stabilized by quantum effects in PIMD while fcc is shown to be favoured by lattice dynamics, which suggests a possible re-entrant low pressure hcp phase for highly quantum systems. Implications for the phase stability of noble gas solids are discussed. For parameters equating to Helium, the expansion due to zero-point vibrations is associated with quantum melting: neither crystal structure is stable at zero pressure. This dataset contains input files and run scripts for the quasiharmonic calculations using GULP, and the PIMD calculations using i-PI and LAMMPS. See README.txt files within each archive for specific details on how to run and analyze the calculations.
DOI: 10.13020/4f95-ex37
title: Adiabatic and Diabatic Energy Data for the Ground and First Excited Singlet States of CH₃NH₂

description: This data set includes adiabatic energies from XMS-CASPT2/6-31++G(d,p) calculations and diabatic energies and couplings calculated using the dipole-quadrupole diabatization method for the ground and first excited singlet states of methylamine (CH₃NH₂) at 1825 geometry points. This data was used to construct an analytical diabatic potential energy matrix.
DOI: 10.22008/fk2/gnyfuk
title: AWS two boom mast Edition 1

description: GC-NET automated weather station (AWS) data v01 from the Greenland Ice Sheet. Data are collected from the two-boom mast design located in the accumulation area, with variables as listed in the AWS_variables.csv file provided. See pypromice for how we process the data product. See variables.csv for the most up-to-date description of the the data variables.
DOI: 10.5281/zenodo.1241546
title: On The Rayleigh–Kuo Criterion For The Tertiary Instability Of Zonal Flows

description: These are the supplementary Matlab codes that can be used to generate the data in figure 3, 4, and 6 in the manuscript "On the Rayleigh--Kuo criterion for the tertiary instability of zonal flows". The abstract of this manuscript reads as follows:

This paper reports the stability conditions for intense zonal flows (ZFs) and the growth rate $\gamma_{\rm TI}$ of the corresponding "tertiary" instability (TI) within the generalized Hasegawa--Mima plasma model. The analytic calculation extends and revises Kuo's analysis of the mathematically similar barotropic vorticity equation for incompressible neutral fluids on a rotating sphere [H.-L. Kuo, J. Meteor. 6, 105 (1949)]; then, the results are applied to the plasma case. An error in Kuo's original result is pointed out. An explicit analytic formula for $\gamma_{\rm TI}$ is derived and compared with numerical calculations. It is shown that a ZF is TI-unstable under the Rayleigh--Kuo criterion known from geophysics plus the condition that the ZF wave number must exceed the inverse ion sound radius. For a sinusoidal ZF, these two necessary conditions combined together are also sufficient for the TI. For non-sinusoidal ZFs, the results are qualitatively consistent. As a corollary, there is no TI in the geometrical-optics limit, i.e., when the DW wavelength is small compared to the ZF scale. This also means that the traditional wave kinetic equation under the geometrical-optics assumption cannot adequately describe the ZF stability.