cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12364232.v1
title: Additional file 9 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 9: Table S8. FPKM values of wheat ASRs in various developmental tissues.
DOI: 10.6084/m9.figshare.11839821
title: Deformation and Solidification Characteristics and Microstructure of Arc Sprayed Ni-Al Composition Coatings

description: Droplets deformation and solidification characteristics in twin-wire arc sprayed Ni-Al were explored in depth. Both theoretical method and numerical model were established for calculating the deformation process of the droplets impacting on the substrate and their solidification behavior in airflow, which based on two models of the volume of fluid (VOF) dual-phase flow and the standard k-ε. The morphology and the microstructure of the composite coatings were analyzed by XRD, SEM and TEM. The results of the experiment indicate the droplets cooling rate ranges from 3.0×107 to 7.5×107 K/s. The main components of Ni-5wt.% Al coating were Ni solid solution, and a small number of Ni3Al4, Al2O3 and NiO. The main phases of Ni-20wt.% Al coating are Ni3Al and NiAl. EDS and TEM analysis shows that there are a few amorphous and equiaxed crystals in the Ni-Al coating. The surface roughness increases with the decrease of spraying pressure and spraying distance.
DOI: 10.6084/m9.figshare.12364187.v1
title: Additional file 2 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 2: Table S2. Primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.11839929.v1
title: Association of leptin and leptin receptor polymorphisms with coronary artery disease in a North Chinese Han population

description: Abstract INTRODUCTION: Leptin (LEP) is a peptide hormone that acts via leptin receptor (LEPR) binding. Genetic evidence from different human populations has implicated LEP/LEPR in the pathogenesis of coronary artery disease (CAD), and suggests that certain LEP/LEPR gene polymorphisms may increase the risk of CAD. The aim of this study was to assess two single nucleotide polymorphisms (SNPs) in LEP genes (rs2167270 and rs7799039) and two in LEPR genes (rs6588147, rs1137100) for association with CAD. METHODS: We enrolled 271 North Chinese Han CAD patients, and 113 healthy age- and sex-matched controls. Genomic DNA was extracted from whole blood, and the four SNPs were assessed using a MassArray system. RESULTS: The G allele frequency at rs2167270 was significantly higher among CAD cases than among controls. The AG genotype at rs7799039 was associated with a significantly decreased risk of CAD unlike the AA genotype used as the reference. The A allele was significantly associated with the CAD patient group. Interestingly, statistically significant differences in genotype and allele frequency at LEP rs2167270 and rs7799039 existed among females but not among males. CONCLUSIONS: The current study detected a significant association between genetic variations at LEP rs7799039 and rs2167270 and the risk of CAD in a north Chinese population, and revealed that LEP rs2167270 and rs7799039 gene polymorphisms might act as predisposing factors for CAD.
DOI: 10.6084/m9.figshare.11839929
title: Association of leptin and leptin receptor polymorphisms with coronary artery disease in a North Chinese Han population

description: Abstract INTRODUCTION: Leptin (LEP) is a peptide hormone that acts via leptin receptor (LEPR) binding. Genetic evidence from different human populations has implicated LEP/LEPR in the pathogenesis of coronary artery disease (CAD), and suggests that certain LEP/LEPR gene polymorphisms may increase the risk of CAD. The aim of this study was to assess two single nucleotide polymorphisms (SNPs) in LEP genes (rs2167270 and rs7799039) and two in LEPR genes (rs6588147, rs1137100) for association with CAD. METHODS: We enrolled 271 North Chinese Han CAD patients, and 113 healthy age- and sex-matched controls. Genomic DNA was extracted from whole blood, and the four SNPs were assessed using a MassArray system. RESULTS: The G allele frequency at rs2167270 was significantly higher among CAD cases than among controls. The AG genotype at rs7799039 was associated with a significantly decreased risk of CAD unlike the AA genotype used as the reference. The A allele was significantly associated with the CAD patient group. Interestingly, statistically significant differences in genotype and allele frequency at LEP rs2167270 and rs7799039 existed among females but not among males. CONCLUSIONS: The current study detected a significant association between genetic variations at LEP rs7799039 and rs2167270 and the risk of CAD in a north Chinese population, and revealed that LEP rs2167270 and rs7799039 gene polymorphisms might act as predisposing factors for CAD.
DOI: 10.6084/m9.figshare.12364214.v1
title: Additional file 6 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 6: Table S5. Information of motifs identified from wheat ASR proteins using MEME motif search tool. Note: aa, amino acids.
DOI: 10.6084/m9.figshare.18131137
title: The role of Populus <i>MYB94</i> transcription factor in seed germination requires the expression of ABA-responsive genes

description: Plant seed germination is easily influenced by endogenous gene expression, hormones and environmental conditions. Here, we investigated a Populus R2R3-MYB transcription factor (referred to as <i>MYB94</i>) that plays a role in seed germination in close relation to the hormone abscisic acid (ABA). Two independent Arabidopsis transgenic lines overexpressing <i>MYB94</i> (Oe-lines) and wild-type (Wt) were no clear differences in the seed germination rates under normal conditions, but the germination rates of the two Oe-lines were both significantly delayed under ABA treatment. This delay in germination is most likely associated with the endogenous hormone abscisic acid (ABA). We find that the transcript levels of several representative genes in relation to ABA synthesis or signaling in the <i>MYB94 </i> Oe-lines showed significantly increased compared with those of the Wt plants. Taken together, our results here reveal the role of the Populus R2R3-MYB transcription factor <i>MYB94</i> in regulating the ABA-responsive genes in plant seed germination.
DOI: 10.6084/m9.figshare.12364229.v1
title: Additional file 2 of Characteristics of antibiotics and antibiotic resistance genes in Qingcaosha Reservoir in Yangtze River Delta, China

description: Additional file 2: Table S2. Antibiotic residues in Qingcaosha Reservoir.
DOI: 10.6084/m9.figshare.19704050
title: SNF5 promotes cell proliferation and immune evasion in non-small cell lung cancer

description: Immune evasion is the process that tumor cells accelerate growth and metastasis by evading the recognition and attack of immune cells. SNF5 is one of the core subunits of SWI/SNF, which is involved in the development of a variety of malignancies. However, the functions of SNF5 in Non-Small Cell Lung Cancer (NSCLC) and the mechanism of SNF5 regulates immune evasion are still unclear. Based on this, we analyzed the expression of SNF5 and overall survival of lung cancer tissues through the cancer genome atlas (TCGA) database. Then we performed genetic gain and loss of function experiments with SNF5 using lentivirus infection and siRNA in NSCLC A549 and NCI-H1299 cells, respectively. We investigated the proliferation and immune evasion of these cells. We further explored the mechanism of SNF5 on NSCLC cells immune evasion. Our data showed that SNF5 was significantly increased in lung cancer tissues than that in normal lung tissues. Furthermore, SNF5 promoted NSCLC cells proliferation and the expressions of immune evasion-related genes. Meantime, overexpressed SNF5 reduced mortality of A549 cells when co-cultured with T cells. Moreover, SNF5 regulated the immune evasion by activating the signal transducer and activator of transcription (STAT3)/ phospho-STAT3 pathway in NSCLC cells. Together, our results validate SNF5 as a tumor oncogene and provide a new target for NSCLC treatment.
DOI: 10.6084/m9.figshare.12364178
title: Additional file 1 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 1: Table S1. Sequences and ID loci information of ASRs in wheat and other species.
DOI: 10.6084/m9.figshare.20227036.v1
title: Additional file 2 of PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes

description: Additional file 2.
DOI: 10.25398/rd.northumbria.25213337
title: A qualitative analysis of perceived barriers and motivators to physical activity in children from ethnic minority groups and white British children.

description: Lack of physical activity is a problem worldwide despite its well-known health benefits. Children from ethnic minority groups report some of the lowest levels of physical activity. In trying to address this, the voices and perspectives of children, especially children from ethnic minority groups, are often overlooked.The primary purpose of this study was to identify and compare the perceived barriers and motivators to physical activity of children from ethnic minority groups and white British children in a UK city. A semi-structured interview on physical activity participation was conducted in English with 20 children aged 8-11 years old.
DOI: 10.25398/rd.northumbria.25213337.v1
title: A qualitative analysis of perceived barriers and motivators to physical activity in children from ethnic minority groups and white British children.

description: Lack of physical activity is a problem worldwide despite its well-known health benefits. Children from ethnic minority groups report some of the lowest levels of physical activity. In trying to address this, the voices and perspectives of children, especially children from ethnic minority groups, are often overlooked.The primary purpose of this study was to identify and compare the perceived barriers and motivators to physical activity of children from ethnic minority groups and white British children in a UK city. A semi-structured interview on physical activity participation was conducted in English with 20 children aged 8-11 years old.
DOI: 10.6084/m9.figshare.11840298.v1
title: Additional file 4 of Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation

description: Additional file 4: Table S3. Gene accession number for Timetree. The T1R2s nucleotide sequences of fishes selected are provided.
DOI: 10.6084/m9.figshare.21801293.v1
title: Optimal Planning of Hybrid DER Penetration in Distribution Network under Actual Geographical Condition: A Case Study

description: Integration of distributed energy resources into optimum location and a suitable size is still one of the major issues faced by electric utilities. In this article, a model is proposed that highlights the key issues of hybrid penetration and integrates renewable resources. In this context, optimization has been done that suggests the optimal combination of renewable energy sources based on cost and carbon emissions for the implementation of an integrated assessment of available energy resources. The proposed model is compared with grid-connected and various hybrid energy models. In addition to renewable penetration, the study also focused on significant reductions in greenhouse gas emissions. For analysis of the proposed approach, a study has been carried out on a selected test feeder named Ramchandrapura feeder of Kota, Rajasthan, India. The results obtained from the simulations include the optimal combination of cost-effective distributed energy resources considering actual weather conditions such as solar radiation, temperature, and wind speed. The overall optimization is done with the help of Homer-Pro software. The major contribution of the article is the economic study of test feeders with real geographic data which also considers the environmental impact of DER integration.
DOI: 10.6084/m9.figshare.11840304
title: Additional file 6 of Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation

description: Additional file 6: Table S5. Expression of candidate reference genes analyzed for the tissue panel using geNorm. GeNorm software was used to compute the expression stability values (M) for each gene where a lower M value corresponds to more stable gene expression.
DOI: 10.6084/m9.figshare.11840295.v1
title: Additional file 3 of Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation

description: Additional file 3: Table S2. Amino acid sequence alignments of genes for phylogenetic analysis. Amino acid sequence alignments of those three genes of different species.
DOI: 10.6084/m9.figshare.12364229
title: Additional file 2 of Characteristics of antibiotics and antibiotic resistance genes in Qingcaosha Reservoir in Yangtze River Delta, China

description: Additional file 2: Table S2. Antibiotic residues in Qingcaosha Reservoir.
DOI: 10.6084/m9.figshare.12364610.v1
title: Additional file 4 of Systematic identification of chicken type I, II and III interferon-stimulated genes

description: Additional file 4. Properties of identified DEGs.
DOI: 10.6084/m9.figshare.12364214
title: Additional file 6 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 6: Table S5. Information of motifs identified from wheat ASR proteins using MEME motif search tool. Note: aa, amino acids.
DOI: 10.6084/m9.figshare.12364232
title: Additional file 9 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 9: Table S8. FPKM values of wheat ASRs in various developmental tissues.
DOI: 10.6084/m9.figshare.12364220
title: Additional file 8 of Genome-wide characterization of the abscisic acid-, stress- and ripening-induced (ASR) gene family in wheat (Triticum aestivum L.)

description: Additional file 8: Table S7. Analysis of TF binding sites in the TaASR promoters.
DOI: 10.6084/m9.figshare.12364628
title: Additional file 7 of Systematic identification of chicken type I, II and III interferon-stimulated genes

description: Additional file 7. GO and KEGG pathway analysis of DEGs.
DOI: 10.6084/m9.figshare.12888569
title: Analysis of clinical features of COVID-19 in cancer patients

description: Analysis of clinical features of COVID-19 in cancer patients
DOI: 10.6084/m9.figshare.12364637
title: Additional file 8 of Systematic identification of chicken type I, II and III interferon-stimulated genes

description: Additional file 8. Details of chicken types I, II, and III ISGs.
DOI: 10.6084/m9.figshare.11840304.v1
title: Additional file 6 of Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation

description: Additional file 6: Table S5. Expression of candidate reference genes analyzed for the tissue panel using geNorm. GeNorm software was used to compute the expression stability values (M) for each gene where a lower M value corresponds to more stable gene expression.
DOI: 10.6084/m9.figshare.20227012
title: Additional file 5 of Integrated transcriptome and hormonal analysis of naphthalene acetic acid-induced adventitious root formation of tea cuttings (Camellia sinensis)

description: Additional file 5: Table S1. KEGG enrichment analysis of DEGs in both the red- and green-stem cutting groups.
DOI: 10.6084/m9.figshare.7121528.v1
title: Different response to middle-Palaeozoic magmatism during intracontinental orogenic processes: evidence from southeastern South China Block

description: Intracontinental orogens are major sites to better understand tectonic regime of plate interior. However, deep response to those processes remains poorly constrained due to the rare exposure of magmatic rocks. Middle-Palaeozoic magmatic rocks from the eastern Yangtze Block (EYB) and Cathaysia Block (CB) of the southeastern South China Block (SCB) have markedly unimodal age distribution with peaks at ~424 and ~438 Ma, respectively. The zircon saturation temperatures (T<sub>–Zr</sub>) range from 699 to 920°C, and increase in granitic rocks of younger age in the CB; however, most of the granitic T<sub>–Zr</sub> values in EYB are low and relatively uniform (643–855°C, most of them lower than 800°C). In CB, the Nd-Hf isotopic ratios of the granitic rocks (εNd(t) = – 13.2 to + 1.0; magmatic zircon εHf(t) = – 36 to + 12) are variable, nonetheless they clearly show the presence of a juvenile component. On the contrary, Nd isotopic ratios (εNd(t) = – 7.8 to + 1.6) of mafic rocks in EYB abruptly increase in rocks of younger age. Within the long-lived intracontinental orogenic processes of EYB and CB, consistent age peaks between metamorphism and magmatism and the abrupt increase in contributions of juvenile materials suggest that the thickened lithospheric roots were delaminated into asthenospheric mantle as many independent parts below the metamorphic domes in CB. The data suggest that the deep response to the intracontinental orogenic processes was strong non-uniform between EYB and CB in terms of magmatic period and contribution of mantle derived material to granitic magmas (related to the crustal reworking). We deduced that the combined influence of far-field stress transmission (derived from the convergence of Australia and the SCB), local delamination event in CB and different degree of reworking of the crustal sources, is the main reason to the different responses between EYB and CB.
DOI: 10.6084/m9.figshare.11840295
title: Additional file 3 of Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation

description: Additional file 3: Table S2. Amino acid sequence alignments of genes for phylogenetic analysis. Amino acid sequence alignments of those three genes of different species.
DOI: 10.6084/m9.figshare.12364583.v1
title: Additional file 10 of Systematic identification of chicken type I, II and III interferon-stimulated genes

description: Additional file 10. IFN-stimulated response elements (ISRE) and gamma-activated sequence (GAS) elements identified in the promoter region of chicken type I, II and III ISGs.
DOI: 10.6084/m9.figshare.20227033
title: Additional file 1 of PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes

description: Additional file 1: Table S1. Summary of phosphorus gene families with representative sequences and orthology groups. Table S2. Public metagenomic datasets analyzed in this study. Table S3. The meandecreaseaccuracy of each filtering factor using randomForest package in R. Table S4. Confusion matrix result of Random Forest analysis using validation data. Table S5. Detection rate of each specific P cycling gene included in simulated gene dataset with an identity of 30%. Table S6. Predicted P cycling gene families.
DOI: 10.6084/m9.figshare.11840301
title: Additional file 5 of Expansion of sweet taste receptor genes in grass carp (Ctenopharyngodon idellus) coincided with vegetarian adaptation

description: Additional file 5: Table S4. Amino acid sequence identities of T1R2 of various vertebrates. Amino acid sequence identities of T1R2 of various vertebrates are provided.
DOI: 10.6084/m9.figshare.20227036
title: Additional file 2 of PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes

description: Additional file 2.
DOI: 10.6084/m9.figshare.11840328
title: Additional file 11 of Comparative population genomics reveals genetic divergence and selection in lotus, Nelumbo nucifera

description: Additional file 11: Dataset S1. The lists of all the genes under artificial selection in cultivated lotus groups.
DOI: 10.6084/m9.figshare.20227109
title: Additional file 1 of Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence

description: Additional file 1. Listeria Isolate Dataset. A list of isolates used in the analysis within this paper and their associated metadata. The SRR codes for each isolate are given which can be used to download the sequencing reads from NCBI.
DOI: 10.6084/m9.figshare.11840451.v1
title: Additional file 3 of A novel estimator of between-study variance in random-effects models

description: Additional file 3 Supplementary figures. Figure S1 Plot of the precision under the second hypothesis. Figure S2 Plot of the precision under the third hypothesis. Figure S3 Plot of the accuracy under the second hypothesis. Figure S4 Plot of the accuracy under the third hypothesis. Figure S5 Plot of the FPR under the second hypothesis. Figure S6 Plot of the FPR under the third hypothesis. Figure S7 Plot of the MCC under the second hypothesis. Figure S8 Plot of the MCC under the third hypothesis. Figure S9 Plot of the sensitivity under the second hypothesis. Figure S10 Plot of the sensitivity under the third hypothesis. Figure S11 Plot of the ROC curve and the AUC value under the second hypothesis. Figure S12 Plot of the ROC under the third hypothesis. The DSLD2 method is developed in this paper. Figure S13 Precision-recall plot under the second hypothesis. Figure S14 Precision-recall plot under the third hypothesis. Figure S15 Bias plot of 6 meta-analysis methods when τ2 is set to 1.0 and SMD is chosen as the effect size measure. Figure S16 RMSE plot of 6 meta-analysis methods when τ2 is set to 1.0 and SMD is chosen as the effect size measure. Figure S17 Bias plot of 6 meta-analysis methods when τ2 is set to 1.0 and MD is chosen as the effect size measure. Figure S18 RMSE plot of 6 meta-analysis methods when τ2 is set to 1.0 and MD is chosen as the effect size measure. Figure S19 Mean of I2 plot of 6 meta-analysis methods when τ2 is set to 1.0 and SMD is chosen as the effect size measure. Figure S20 Mean of I2 plot of 6 meta-analysis methods when τ2 is set to 1.0 and MD is chosen as the effect size measure.
DOI: 10.6084/m9.figshare.20226994
title: Additional file 10 of Integrated transcriptome and hormonal analysis of naphthalene acetic acid-induced adventitious root formation of tea cuttings (Camellia sinensis)

description: Additional file 10: Table S6. Selected reaction monitoring conditions for protonated or deprotonated plant hormones ([M+H]+or[M-H]-)
DOI: 10.6084/m9.figshare.7121837
title: Additional file 3 of Discovering large conserved functional components in global network alignment by graph matching

description: The detailed results of Figure 13â 15 for all aligners. (XLS 8 kb)
DOI: 10.6084/m9.figshare.7121852
title: Additional file 4 of Discovering large conserved functional components in global network alignment by graph matching

description: The results produced by GMAlign. Each pathway pair has four sheets to describe alignment results. The former two sheets represent retrieving results of two species by APID dataserver [38] respectively. The third sheet is direct alignment results of GMAlign. The forth sheet is the final conserved interactions of the pathway pair. (XLS 79 kb)
DOI: 10.6084/m9.figshare.7121894.v1
title: Additional file 7 of Discovering large conserved functional components in global network alignment by graph matching

description: The results produced by L-GRAAL. Each pathway pair has four sheets to describe alignment results. The former two sheets represent retrieving results of two species by APID dataserver [38] respectively. The third sheet is direct alignment results of L-GRAAL. The forth sheet is the final conserved interactions of the pathway pair. (XLS 6 kb)