cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id226833.1
title: StrainInfo SI-ID 226833.1

description: StrainInfo dataset 226833 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226834.1
title: StrainInfo SI-ID 226834.1

description: StrainInfo dataset 226834 about a strain of Berkeleyomyces basicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226835.1
title: StrainInfo SI-ID 226835.1

description: StrainInfo dataset 226835 about a strain of Pyricularia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226858.1
title: StrainInfo SI-ID 226858.1

description: StrainInfo dataset 226858 about a strain of Bipolaris cynodontis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226859.1
title: StrainInfo SI-ID 226859.1

description: StrainInfo dataset 226859 about a strain of Pyrenophora bromi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226860.1
title: StrainInfo SI-ID 226860.1

description: StrainInfo dataset 226860 about a strain of Pyrenophora erythrospila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226956.1
title: StrainInfo SI-ID 226956.1

description: StrainInfo dataset 226956 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226957.1
title: StrainInfo SI-ID 226957.1

description: StrainInfo dataset 226957 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226958.1
title: StrainInfo SI-ID 226958.1

description: StrainInfo dataset 226958 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226836.1
title: StrainInfo SI-ID 226836.1

description: StrainInfo dataset 226836 about a strain of Pyricularia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226837.1
title: StrainInfo SI-ID 226837.1

description: StrainInfo dataset 226837 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226861.1
title: StrainInfo SI-ID 226861.1

description: StrainInfo dataset 226861 about a strain of Pyrenophora fugax. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226862.1
title: StrainInfo SI-ID 226862.1

description: StrainInfo dataset 226862 about a strain of Pyrenophora grahamii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226863.1
title: StrainInfo SI-ID 226863.1

description: StrainInfo dataset 226863 about a strain of Pyrenophora teres. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226959.1
title: StrainInfo SI-ID 226959.1

description: StrainInfo dataset 226959 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226960.1
title: StrainInfo SI-ID 226960.1

description: StrainInfo dataset 226960 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226961.1
title: StrainInfo SI-ID 226961.1

description: StrainInfo dataset 226961 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226864.1
title: StrainInfo SI-ID 226864.1

description: StrainInfo dataset 226864 about a strain of Pyrenophora teres f. maculata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226865.1
title: StrainInfo SI-ID 226865.1

description: StrainInfo dataset 226865 about a strain of Pyrenophora tritici-repentis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226866.1
title: StrainInfo SI-ID 226866.1

description: StrainInfo dataset 226866 about a strain of Pyrenophora wirreganensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226867.1
title: StrainInfo SI-ID 226867.1

description: StrainInfo dataset 226867 about a strain of Phytophthora cambivora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226962.1
title: StrainInfo SI-ID 226962.1

description: StrainInfo dataset 226962 about a strain of Bacillus thuringiensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226963.1
title: StrainInfo SI-ID 226963.1

description: StrainInfo dataset 226963 about a strain of Phytophthora infestans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226964.1
title: StrainInfo SI-ID 226964.1

description: StrainInfo dataset 226964 about a strain of Phytophthora infestans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226965.1
title: StrainInfo SI-ID 226965.1

description: StrainInfo dataset 226965 about a strain of Phytophthora infestans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227039.1
title: StrainInfo SI-ID 227039.1

description: StrainInfo dataset 227039 about a strain of Pseudomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227040.1
title: StrainInfo SI-ID 227040.1

description: StrainInfo dataset 227040 about a strain of Pseudomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226868.1
title: StrainInfo SI-ID 226868.1

description: StrainInfo dataset 226868 about a strain of Phytophthora capsici. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227041.1
title: StrainInfo SI-ID 227041.1

description: StrainInfo dataset 227041 about a strain of Pseudomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226869.1
title: StrainInfo SI-ID 226869.1

description: StrainInfo dataset 226869 about a strain of Phytophthora erythroseptica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226870.1
title: StrainInfo SI-ID 226870.1

description: StrainInfo dataset 226870 about a strain of Pantoea agglomerans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226871.1
title: StrainInfo SI-ID 226871.1

description: StrainInfo dataset 226871 about a strain of Pantoea agglomerans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226966.1
title: StrainInfo SI-ID 226966.1

description: StrainInfo dataset 226966 about a strain of Phytophthora meadii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226967.1
title: StrainInfo SI-ID 226967.1

description: StrainInfo dataset 226967 about a strain of Phytophthora palmivora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226968.1
title: StrainInfo SI-ID 226968.1

description: StrainInfo dataset 226968 about a strain of Phytophthora nicotianae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226969.1
title: StrainInfo SI-ID 226969.1

description: StrainInfo dataset 226969 about a strain of Phytophthora nicotianae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227042.1
title: StrainInfo SI-ID 227042.1

description: StrainInfo dataset 227042 about a strain of Pectobacterium carotovorum subsp. carotovorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227043.1
title: StrainInfo SI-ID 227043.1

description: StrainInfo dataset 227043 about a strain of Pectobacterium carotovorum subsp. carotovorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227044.1
title: StrainInfo SI-ID 227044.1

description: StrainInfo dataset 227044 about a strain of Pectobacterium carotovorum subsp. carotovorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.11953485
title: A New Model and Dating for the Evolution of Complex Plastids of Red Alga Origin

description: The zip files includes alignments of protein sequences in fasta format (SequenceAlignments.zip) and their concatenated sets used in our research project (ConcatenatedAlignments.zip). Additionally, we included raw (unaligned) protein sequences in fasta format (RawSequences.zip). In total, we employed 97 amino acid sequences of conserved plastid-encoded proteins, carefully selected from the NCBI reference sequence database (https://www.ncbi.nlm.nih.gov/refseq/),  and GenBank (https://www.ncbi.nlm.nih.gov/genbank/), representing 112 organisms. Our dataset included 111 eukaryotes carrying red-alga derived plastids and the closest plastid cyanobacterial relative Gloeomargarita lithophora Alchichica D10. We performed independent alignments of each homologous protein group using a slow and accurate L-INS-i algorithm implemented in MAFFT v7.429 (https://doi.org/10.1093/molbev/mst010). The resulting multiple sequence alignments were carefully assessed using AliView (http://dx.doi.org/10.1093/bioinformatics/btu531), and phylogenetically informative sites were selected through trimAl https://doi.org/10.1093/bioinformatics/btp348and ClipKIT (https://doi.org/10.1371/journal.pbio.3001007). The trimmed alignments were concatenated into supermatrices using SequenceMatrix 1.8 (https://doi.org/10.1111/j.1096-0031.2010.00329.x)to generate comprehensive datasets for phylogenetic and molecular clock analyses. We also generated a supermatrix composed of untrimmed alignments.
DOI: 10.60712/si-id227045.1
title: StrainInfo SI-ID 227045.1

description: StrainInfo dataset 227045 about a strain of Brenneria alni. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226872.1
title: StrainInfo SI-ID 226872.1

description: StrainInfo dataset 226872 about a strain of Xanthomonas translucens pv. undulosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226873.1
title: StrainInfo SI-ID 226873.1

description: StrainInfo dataset 226873 about a strain of Xanthomonas campestris pv. vasculorum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226874.1
title: StrainInfo SI-ID 226874.1

description: StrainInfo dataset 226874 about a strain of Xanthomonas citri pv. sesbaniae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.5281/zenodo.10069136
title: A New Model and Dating for the Evolution of Complex Plastids of Red Alga Origin

description: The zip files includes alignments of protein sequences in fasta format (SequenceAlignments.zip) and their concatenated sets used in our research project (ConcatenatedAlignments.zip). Additionally, we included raw (unaligned) protein sequences in fasta format (RawSequences.zip). In total, we employed 97 amino acid sequences of conserved plastid-encoded proteins, carefully selected from the NCBI reference sequence database (https://www.ncbi.nlm.nih.gov/refseq/),  and GenBank (https://www.ncbi.nlm.nih.gov/genbank/), representing 112 organisms. Our dataset included 111 eukaryotes carrying red-alga derived plastids and the closest plastid cyanobacterial relative Gloeomargarita lithophora Alchichica D10. We performed independent alignments of each homologous protein group using a slow and accurate L-INS-i algorithm implemented in MAFFT v7.429 (https://doi.org/10.1093/molbev/mst010). The resulting multiple sequence alignments were carefully assessed using AliView (http://dx.doi.org/10.1093/bioinformatics/btu531), and phylogenetically informative sites were selected through trimAl https://doi.org/10.1093/bioinformatics/btp348and ClipKIT (https://doi.org/10.1371/journal.pbio.3001007). The trimmed alignments were concatenated into supermatrices using SequenceMatrix 1.8 (https://doi.org/10.1111/j.1096-0031.2010.00329.x)to generate comprehensive datasets for phylogenetic and molecular clock analyses. We also generated a supermatrix composed of untrimmed alignments.
DOI: 10.5281/zenodo.10069137
title: A New Model and Dating for the Evolution of Multimembrane Plastids of Red Alga Origin

description: The zip files includes alignments of protein sequences in fasta format (SequenceAlignments.zip) and their concatenated sets used in our research project (ConcatenatedAlignments.zip). Additionally, we included raw (unaligned) protein sequences in fasta format (RawSequences.zip). In total, we employed 97 amino acid sequences of conserved plastid-encoded proteins, carefully selected from the NCBI reference sequence database (https://www.ncbi.nlm.nih.gov/refseq/),  and GenBank (https://www.ncbi.nlm.nih.gov/genbank/), representing 112 organisms. Our dataset included 111 eukaryotes carrying red-alga derived plastids and the closest plastid cyanobacterial relative Gloeomargarita lithophora Alchichica D10. We performed independent alignments of each homologous protein group using a slow and accurate L-INS-i algorithm implemented in MAFFT v7.429 (https://doi.org/10.1093/molbev/mst010). The resulting multiple sequence alignments were carefully assessed using AliView (http://dx.doi.org/10.1093/bioinformatics/btu531), and phylogenetically informative sites were selected through trimAl https://doi.org/10.1093/bioinformatics/btp348and ClipKIT (https://doi.org/10.1371/journal.pbio.3001007). The trimmed alignments were concatenated into supermatrices using SequenceMatrix 1.8 (https://doi.org/10.1111/j.1096-0031.2010.00329.x)to generate comprehensive datasets for phylogenetic and molecular clock analyses. We also generated a supermatrix composed of untrimmed alignments.
DOI: 10.60712/si-id226970.1
title: StrainInfo SI-ID 226970.1

description: StrainInfo dataset 226970 about a strain of Pyrenophora dictyoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226971.1
title: StrainInfo SI-ID 226971.1

description: StrainInfo dataset 226971 about a strain of Pyrenophora dictyoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226972.1
title: StrainInfo SI-ID 226972.1

description: StrainInfo dataset 226972 about a strain of Pyrenophora seminiperda. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226973.1
title: StrainInfo SI-ID 226973.1

description: StrainInfo dataset 226973 about a strain of Alternaria alternata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227046.1
title: StrainInfo SI-ID 227046.1

description: StrainInfo dataset 227046 about a strain of Burkholderia cepacia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227047.1
title: StrainInfo SI-ID 227047.1

description: StrainInfo dataset 227047 about a strain of Xanthomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227048.1
title: StrainInfo SI-ID 227048.1

description: StrainInfo dataset 227048 about a strain of Pseudomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226875.1
title: StrainInfo SI-ID 226875.1

description: StrainInfo dataset 226875 about a strain of Pseudomonas syringae pv. syringae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id227049.1
title: StrainInfo SI-ID 227049.1

description: StrainInfo dataset 227049 about a strain of Bacillus mycoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id226876.1
title: StrainInfo SI-ID 226876.1

description: StrainInfo dataset 226876 about a strain of Aspergillus niger. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.