cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30134530.v1
title: Multimodal imaging and electrophysiological features in bradyopsia associated with homozygous variants (c.895T&gt;C) in Regulator of G-protein Signaling 9 (<i>RGS9</i>)

description: To report multimodal imaging findings and natural history of clinical features in two probands with bradyopsia harboring homozygous variants (c.895T&gt;C) in Regulator of G-protein Signaling 9 (RGS9). Ophthalmic history, clinical examination, fundus autofluorescence (FAF), optical coherence tomography (OCT), microperimetry, flood-illuminated adaptive optics (AO) imaging, and electroretinogram (ERG) were obtained. A 37-year-old male and a 67-year-old female from non-consanguineous parents had normal fundus examination, FAF, and OCT. ERGs for the male case between the age of 4 and 38 years showed no progression. Both probands had flat International Society for Clinical Electrophysiology of Vision (ISCEV) Standard full-field ERG light-adapted (LA) responses but dark-adapted (DA) red x-wave and S-cone responses were present. DA 30 Hz flicker was present after 2 but not after 10 seconds. The reduced amplitude and b:a ratio of the DA10 response improved with increasing interstimulus interval. AO and microperimetry demonstrated preservation of foveal cone density and subnormal retinal sensitivity, respectively. Both measures remained stable over 3 years. The c.895T&gt;C variant was classified as pathogenic. Bradyopsia associated with homozygous RGS9 c.895T&gt;C variants is characterized by normal retinal structure but subnormal macular sensitivity. Extended ERG protocols can be used to confirm delayed phototransduction recovery.
DOI: 10.48689/xegb-sp31
title: Zoning (Regional District of Nanaimo)
DOI: 10.48689/fr0n-9825
title: Zoning (Port Moody)
DOI: 10.5281/zenodo.18278343
title: Data for Atomic-Scale Topography of Freestanding Oxide Films by Electron Ptychography
DOI: 10.5281/zenodo.18278344
title: Data for Atomic-Scale Topography of Freestanding Oxide Films by Electron Ptychography
DOI: 10.48689/nka6-1w46
title: Zoning (North Vancouver)
DOI: 10.7272/q6jq0z8f
title: Clinical reasoning: A two-day old boy with sudden cardiac arrest and encephalopathy

description: Our clinical reasoning paper describes a unique case of the rare neonatal
 form of CPT2 deficiency. Our patient developed acute clinical
 decompensation on day two of life followed by encephalopathy, hypotonia,
 and weakness. Our manuscript guides the reader through a discussion of the
 differential diagnosis for sudden decompensation in a previously healthy
 neonate, and provides a framework to aid the diagnostic evaluation. The
 data deposited here summarizes detailed serologic,
 electroencephalographic, radiologic, and genetic studies that supported
 the diagnosis of CPT2 deficiency.
description: Supplementary Figure 1:
 Normalized Electroencephalographic Data and Family Pedigree.
 (A) Follow-up amplitude
 integrated EEG at 24 hours demonstrated improved continuity and increased
 peak amplitudes. Similar to continuous EEG, amplitude integrated EEG
 provides information on voltage amplitude, background continuity, presence
 of sleep-wake cycles, and can aid in the prognostication of neonates with
 encephalopathy. (B) Repeat continuous EEG at 24 hours shows reduced
 discontinuity and improved variability and reactivity; no epileptiform
 discharges are present. (C) Family pedigree. The arrowhead indicates the
 proband and the red square indicates CPT2 deficiency. Of note, the
 mother’s pregnancy history was significant for two first-trimester
 spontaneous abortions of unknown etiology, as well as an infant born at 26
 weeks who passed away within 24 hours of delivery from pulmonary
 complications of prematurity in a low-resource setting.   Supplementary Table 1:
 Comprehensive laboratory results from the patient's diagnostic
 evaluation. For
 tests that were repeated during hospitalization, only the first test
 result is presented in the table. Abnormal values are in bold
 font.
DOI: 10.48689/xzqs-2h58
title: Zoning (New Westminster)
DOI: 10.48689/9jwt-sg15
title: Zoning (Nanaimo)
DOI: 10.5061/dryad.d7wm37q15
title: Data from: A role for the local environment in driving species-specific parasitism in a multi-host parasite system

description: The extent and magnitude of parasitism often vary among closely related
 host species and across populations within species. Determining the
 ecological basis for this species and population-level variation in
 parasitism is critical for understanding infection dynamics in
 multi-host-parasite systems. To investigate such ecological underpinnings
 of variation in parasitism, we studied Enallagma damselflies host species
 and their water mite (Arrenurus spp.) ectoparasites in lakes. We first
 evaluated how host identity and density could shape parasitism. To test
 the effects of con- and heterospecific host density on parasitism, we used
 a field experiment with E. basidens and E. signatum. We found that
 parasitism did not vary with con- or heterospecific density and was
 determined by host identity alone, with no spillover effects. We also
 evaluated the potential role of local adaptation and resource availability
 in shaping parasitism. To do so, we used E. signatum in a reciprocal
 transplant experiment crossed with a prey resource level manipulation.
 This experiment revealed that parasitism declined sharply for one host
 population in its non-local lake, but not the other source population,
 with no effects of prey levels. This asymmetry implies that damselflies
 express enhanced defenses against parasitism that are not population
 specific nor dependent on resource abundance, or that mites developed
 heightened local host specificity. The results of multivariate modeling
 from an observational study generally supported these experimental
 findings: neither host density nor resource abundance strongly explained
 among population variation in parasitism. Instead, local abiotic
 conditions (pH) had the strongest relationship with parasitism, with
 minimal associations with predator density, temperature, and a measure of
 immune function. Collectively, our findings suggest a crucial role for the
 local environment in shaping host-parasite interactions within
 multi-host-parasite systems. More generally, these results show that
 research at the intersection of community ecology and disease ecology is
 critical for understanding host-parasite dynamics within natural
 communities.
DOI: 10.48689/khr1-qd54
title: Zoning (Langley)
DOI: 10.5061/dryad.dz08kprx5
title: Time lags and the invasion debt in plant naturalisations

description: Ecological processes often exhibit time lags. For plant invasions, lags of
 decades to centuries between species’ introduction and establishment in
 the wild (naturalisation) are common, leading to the idea of an invasion
 debt: accelerating rates of introduction result in an expanding pool of
 introduced species that will naturalise in the future. Here, I show how a
 concept from survival analysis, the hazard function, provides an intuitive
 way to understand and forecast time lags. For plant naturalisation,
 theoretical arguments predict that lags between introduction and
 naturalisation will have a unimodal distribution, and that increasing
 horticultural activity will cause the mean and variance of lag times to
 decline over time. These predictions were supported by data on
 introduction and naturalisation dates for plant species introduced to
 Britain. While increasing trade and horticultural activity can generate an
 invasion debt by accelerating introductions, the same processes could
 lower that debt by reducing lag times.
description: Dates of first recorded introduction and naturalisation for alien
 plant species in Britain obtained from the literature and online
 databases.
DOI: 10.48689/1j42-rd45
title: Zoning (Gibsons)
DOI: 10.48689/bc9p-nd53
title: Zoning (Courtenay)
DOI: 10.5061/dryad.p8cz8w9q3
title: Data from: Plastic but not adaptive: habitat-driven differences in metabolic rate despite no differences in selection between habitats

description: Metabolic plasticity in response to different environmental conditions is
 widespread across taxa. It is reasonable to expect that such plasticity
 should be adaptive, but only few studies have determined the adaptive
 significance of metabolic plasticity by formally estimating selection on
 metabolic rate under different environmental conditions. We used a model
 marine colonial invertebrate, Bugula neritina to examine selection on
 metabolic rate in a harsh and a benign environment in the field, then
 tested whether these environments induced the expression of different
 metabolic phenotypes. We conducted two experimental runs and found
 evidence for positive correlational selection on the combination of
 metabolic rate and colony size in both environments in one run, whereas we
 could not detect any selection on metabolic rate in the second run. Even
 though there was no evidence for different selection regimes in the
 different environments, colonies expressed different metabolic phenotypes
 depending on the environment they experienced. Furthermore, there was no
 relationship between the degree of plasticity expressed by an individual
 and their subsequent fitness. In other words, we found evidence for
 phenotypic plasticity in metabolic rate, but there was no evidence that
 this plasticity was adaptive. In the absence of estimates of performance,
 changes in metabolic rate should not be assumed to be adaptive.
description: We estimated survival, growth, and reproduction of each
 individual by checking colony absence/presence and counting the number of
 bifurcations (colony size) and the number of ovicells (external offspring
 bearing brood chambers; every ovicell contains a single larva) every two
 weeks over a period of six months.
DOI: 10.48689/v6t7-xn97
title: Zoning (Coquitlam)
DOI: 10.5061/dryad.pnvx0k6mc
title: Adaptation across geographic ranges is consistent with strong selection in marginal climates and legacies of range expansion

description: Every species experiences limits to its geographic distribution. Some
 evolutionary models predict that populations at range edges are less
 well-adapted to their local environments due to drift, expansion load, or
 swamping gene flow from the range interior. Alternatively, populations
 near range edges might be uniquely adapted to marginal environments. In
 this study, we use a database of transplant studies that quantify
 performance at broad geographic scales to test how local adaptation, site
 quality, and population quality change from spatial and climatic range
 centers towards edges. We find that populations from poleward edges
 perform relatively poorly, both on average across sites (15% lower
 population quality) and when compared to other populations at home (31%
 relative fitness disadvantage), consistent with these populations
 harboring high genetic load. Populations from equatorial edges also
 perform poorly on average (18% lower population quality) but, in contrast,
 outperform foreign populations (16% relative fitness advantage),
 suggesting that populations from equatorial edges have adapted to unique
 environments. Finally, we find that populations from sites that are
 thermally extreme relative to the species' niche demonstrate strong
 local adaptation, regardless of geographic position. Our findings indicate
 that both nonadaptive processes and adaptive evolution contribute to
 variation in adaptation across species' ranges.
description: This dataset contains fitness data gathered from a systematic
 literature search of transplant experiments, along with geographic and
 climatic covariates derived for this study. Included is the final data
 file and model running scripts, as well as scripts, GBIF occurrence data,
 and intermediate files demonstrating how spatial and climatic predictors
 were calculated.
description: See README file.
DOI: 10.48689/kgsa-1w56
title: Zoning (Colwood)
DOI: 10.48689/ekx0-2q78
title: Zoning (Burnaby)
DOI: 10.5061/dryad.k3j9kd56p
title: Data from: Demographic and ecogeographic factors limit wild grapevine spread at the southern edge of its distribution range - wild grapevine sampling locations, Maxent input files, morphological and microsatellite data

description: This dataset contains raw data described in the paper: "Rahimi O.,
 Ohana-Levi N., Brauner H., Inbar N., Hübner S. and Drori E. (2021)
 "Demographic and ecogeographic factors limit wild grapevine spread at
 the southern edge of its distribution range",  accepted for
 publication in "Ecology and Evolution". The spatial distribution
 of plants is constrained by demographic and eco-geographic factors that
 determine the range and abundance of the species. In this study, we
 performed genetic and morphological analyzes based on SSR and OIV
 datasets. In addition, according to the spatial distribution model
 performed by Maxent software we found that distance to water sources,
 Normalized difference vegetation index, and precipitation are the main
 environmental factors constraining V.v. sylvestris distribution at its
 southern distribution range. All raw data used for this study can be found
 in this deposit which contains a table with grapevine locations, Maxent
 input files, morphological and microsatellite data.
description: Described in Materials and methods section in paper by Rahimi O., Ohana-Levi N., Brauner
 H., Inbar N., Hübner S. and Drori E. (2021) "Demographic and
 ecogeographic factors limit wild grapevine spread at the southern edge of
 its distribution range"
description: This dataset contains a readme,
 an Excel file and a folder named "South Levant Maxent input
 files", containing Maxent files. The file "A table of South
 Levant wild grapevine sampling locations in the wilds, morphological and
 microsatellite data" includes 3 tables: (1) wild grapevine sampling
 locations, which were used for the Maxent and Multivariate spatial
 clustering analyses, (2) the morphological data among 68 sampled
 accessions that were characterized by 20 OIV descriptors and (3)
 microsatellite data for 129 accessions based on 20 SSR mark (two alleles
 for each SSR). The folder "South Levant
 Maxent input files" contains 10 data layers (scaled grids to a
 spatial resolution of 30 m) which were used for the niche modeling
 analysis by Maxent software and seven of them were used for the
 Multivariate spatial clustering analysis (The readme file contains an
 explanation of each of the variables in this
 dataset.)
DOI: 10.48689/qe67-w172
title: Zoning (Abbotsford)
DOI: 10.48689/qbyj-aj56
title: Zonation of intertidal biomass and related benthic data from Sturgeon and Roberts Banks, Fraser River Estuary, British Columbia .
DOI: 10.5061/dryad.n2z34tmw6
title: Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs

description: A current debate within population genomics surrounds the relevance of
 patterns of genomic differentiation between closely related species for
 our understanding of adaptation and speciation. Mounting evidence across
 many taxa suggests that the same genomic regions repeatedly develop
 elevated differentiation in independent species pairs. These regions often
 coincide with high gene density and/or low recombination, leading to the
 hypothesis that the genomic differentiation landscape mostly reflects a
 history of background selection, and reveals little about adaptation or
 speciation. A comparative genomics approach with multiple independent
 species pairs at a timescale where gene flow and ILS are negligible
 permits investigating whether different evolutionary processes are
 responsible for generating lineage-specific versus shared patterns of
 species differentiation. We use whole-genome re-sequencing data of 195
 individuals from four Ficedula flycatcher species comprising two
 independent species pairs: collared and pied flycatchers, and red-breasted
 and taiga flycatchers. We found that both shared and lineage-specific FST
 peaks could partially be explained by selective sweeps, with recurrent
 selection likely to underlie shared signatures of selection, while
 indirect evidence supports a role of recombination landscape evolution in
 driving lineage specific-signatures of selection. This work therefore
 provides evidence for an interplay of positive selection and recombination
 to genomic landscape evolution.
description: This dataset contains SNP calls generated with GATK
 HaplotypeCaller followed by GenotypeGVCFs for collared, pied, red-breasted
 and taiga flycatchers, as well as the outgroup Ficedula hyperythra. Hard
 filter thresholds have been applied to the data (QD &lt; 2.0, FS
 &gt; 60.0, MQ &lt; 40.0, MQRankSum &lt; -12.5, ReadPosRankSum
 &lt; -8.0), and SNPs falling within annotated repeats are removed. 9
 pied and 7 taiga samples with high amounts of missing data have been
 removed. Genotype filters for minimum depth of 5, maximum depth 200 and
 minimum genotype quality 30 have been applied, however sites with high
 amounts of missing datahave not yet been removed from this file. Only
 scaffolds mapping to autosomes according to the collared flycatcher
 reference genome are included.
description: Additional files contain positions of SNPs with more than 10
 percent missing data for each of the species or species pairs. For species
 pairs, sites with greater than 10% missing data in either species were
 removed.  A bed file contains the coordinates of
 regions identified as putatively collapsed duplicates in the assembly.
 SNPs falling within these regions were removed from all
 analyses.
DOI: 10.48689/n5c9-nf76
title: World View
DOI: 10.48689/tb6w-yc09
title:  World Porifera Database
DOI: 10.5061/dryad.hmgqnk9gf
title: Dispersers and environment drive global variation in fruit color syndromes

description: The colors of fleshy fruits play a critical role in plant dispersal by
 advertising ripe fruits to consumers. Fruit colors have long been
 classified into syndromes attributed to selection by animal dispersers,
 despite weak evidence for this hypothesis. Here, we test the relative
 importance of biotic (bird and mammal frugivory) and abiotic (wet season
 temperatures, growing season length, and UV-B radiation) factors in
 determining fruit color syndrome in 3,163 species of fleshy-fruited
 plants. We find that both dispersers and environment are important, and
 they interact. In warm areas, contrastive, bird-associated fruit colors
 increase with relative bird frugivore prevalence, whereas in cold places
 these colors dominate even where mammalian dispersers are prevalent. We
 present near-global maps of predicted fruit color syndrome based on our
 species-level model and our newly developed characterizations of relative
 importance of bird and mammal frugivores.
description: In brief, data were derived from publicly available sources
 (listed in the README file).  To process plant species data, we took data
 on fruit coloration from Sinnott-Armstrong et al (2018), and then combined
 those data with occurrence records from GBIF, removing all species with
 fewer than 20 occurrences.  We classified fruit colors into
 "contrastive" (black, blue, red, and white) and
 "cryptic" (green, brown, yellow, orange) syndromes traditionally
 associated with bird and mammal dispersal, respectively.  Finally, we
 produced predictor layers for growing season length, UV radiation, and wet
 season temperatures as well as a biotic variable, relative bird frugivore
 prevalence.  Relative bird frugivore prevalence values are the proportion
 of frugivores, per grid cell, that are birds out of frugivorous birds and
 mammals.  This variable is weighted by diet (e.g., a bird species that is
 entirely frugivorous has a weight of 1; a mammal species whose diet is 20%
 fruit has a weight of 0.2).  We also conducted alternative analyses
 wherein this variable is also weighted by the range size of the bird and
 mammal species in order to downweight species with very large
 distributions. More details can be found in the
 associated manuscript.
description: The README file contains a description of the data sets and
 variable names.
DOI: 10.48689/9nsx-3697
title:  Wind Speed and Direction (Iowa State University)
DOI: 10.5061/dryad.zcrjdfnbg
title: Data from: Why is inverse symmetry the fundamental architecture of DNA?

description: A striking global property of genomes observable across all domains of
 life is their universal inverse symmetry, manifest as equivalent
 frequencies of inverse complementary sequence motifs on the same strand of
 duplex DNA, as originally stated in Chargaff’s Second Parity Rule (CPR2)
 for mononucleotides. Simple mechanistic explanations of CPR2 have proven
 unsatisfactory. In contrast, we use a conservation principle to explain
 not only inverse symmetry and its global nature, but also how it breaks
 down. CoHSI theory (Conservation of Hartley-Shannon Information) when
 applied to the structure of dsDNA, considered as a homogeneous discrete
 system, predicts a power-law relationship in frequency versus rank-order
 of sequence motifs (n-tuples) in a single strand. We show how this
 combines with inter-strand Watson-Crick base-pairing to predict a
 genome-wide power-law relationship in frequency versus rank-order of
 stepped-pairs of inverse complementary motifs (ie. universal inverse
 symmetry). These predictions were tested and validated on 175 genomes
 drawn from the 3 domains of life plus viruses. We find that CPR2 holds
 closely for genomes over 10^5 bp in length, and that CPR2 compliance
 declines in shorter genomes in inverse proportion to genome length and in
 direct proportion to n-tuple size, regardless of DNA, RNA or single- or
 double-stranded nature.
description: This is a complete computational reproducibility package allowing
 all results, tables and diagrams to be reproduced individually for this
 study, as well as performing verification checks on machine environment,
 availability of essential open source packages, quality of arithmetic and
 regression testing of the outputs. It has been tested
 locally to recreate each figure and statistical computation.
description: This is self-contained. All information is included.
DOI: 10.48689/pse6-cn95
title:  Wind Energy Potential
DOI: 10.48689/4sys-5v76
title:  Wind Energy Potential
DOI: 10.5061/dryad.8cz8w9gpt
title: Chironomid assemblages and inferred summer temperature, late Rissian, Eemian and earliest Würmian, S Germany

description: The data herein presents a new chironomid record and associated
 chironomid-based temperature reconstruction covering the mid
 Eemian to the end of the first Würmian stadial (ca. 125–105
 ka), augmented by results for the late Rissian
 glaciation and the early Brörup interstadial from the Füramoos
 palaeolake, southern Germany. There is an unconformity
 in the sediment core analysed between the late Rissian sediments and the
 mid Eemian sediments. These data also include non-chironomid
 invertebrate remains, including Ceratopogonidae, Daphnia and Ephemeroptera
 as well as Characean oospores.
description: <strong>Sample processing</strong>: Sediment samples
 were soaked in room temeprature 10% KOH solution for 6 hours before being
 sieved through 100 and 200 micrometer sieves. Chironomids were picked from
 those samples using a Bogorov tray under a stereomicroscope (30 – 50 x
 magnification). Samples were dried and then mounted on microscope slides
 using Euparal and identified under at 40 – 400 x magnification  with a
 composund microscope. The full laboratory methods are presented in the
 associated manuscript. For post identification data
 processing and temperature reconstruction analysis please see the
 associated publication in Boreas: https://doi.org/10.1111/bor.12567.
description: There is an unconformity in the sediment core between the late
 Rissian sediments and the mid Eemian sediments. Therefore neither the
 assemblage record nor temperature reconstruction are continuous across
 this section. Do not use them as such.
DOI: 10.48689/m622-3s16
title:  Wildlife management units
DOI: 10.48689/xr5c-7307
title:  Wildifire Hazard Areas (Cowichan Valley Regional District; CVRD)