cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12841031.v1
title: Biomineralization and magnetism of uncultured magnetotactic coccus strain THC-1 with non-chained magnetosomal magnetic nanoparticles

description: Morphological features of magnetotactic cocci strain THC-1 cells. And data distributions and comparison of magnetic properties for magnetite with different MTB and non-MTB origins.
DOI: 10.6084/m9.figshare.12315230.v2
title: Aspergillus fumigatus transcription factors involved in the caspofungin paradoxical effect, supplementary files

description: <i>Aspergillus fumigatus </i>is the leading cause of pulmonary fungal diseases. Azoles have been used for many years as the main antifungal agents to treat and prevent invasive aspergillosis. However, in the last ten years there are several reports of azole resistance in <i>A. fumigatus</i> and new strategies are needed to combat invasive aspergillosis. Caspofungin is effective against other human fungal pathogens, but it is only fungistatic against <i>A. fumigatus</i>. Resistance to caspofungin in <i>A. fumigatus</i> have been linked to mutations in the <i>fksA</i> gene that encodes the target enzyme of the drug, β-1,3-glucan synthase. However, tolerance to high caspofungin concentrations, a phenomenon known as caspofungin paradoxical effect (CPE), is also important for subsequent adaptation and drug resistance evolution. Here, we have identified and characterized the transcription factors involved in the response to CPE by screening an <i>A. fumigatus</i> library of 484 null transcription factors (TFs) in CPE drug concentrations. We have identified eleven TFs that had reduced CPE encoding proteins involved in the basal modulation of the RNA polymerase II initiation sites, calcium metabolism and cell wall remodelling. One of theseTFs FhdA was important for mitochondrial respiratory function and iron metabolism. The Δ<i>fhdA</i> mutant had decreased growth when exposed to Congo Red or at high temperature. RNAseq analysis and further experimental validation indicate that the Δ<i>fhdA</i> mutant showed diminished respiratory capacity, probably affecting several pathways related to the caspofungin tolerance and resistance. Our results provide the foundation to understand signaling pathways that are important for caspofungin tolerance and resistance.
DOI: 10.6084/m9.figshare.22557355.v1
title: SPSS Data Set for Grief and Mental Health Outcomes Among College Students

description: This is a subset of data extracted from a larger data set on studnent wellness and wellbeing collected in November 2018 at a small liberal arts university in Northern California. The variables used in our manuscript submitted for publication are included in this file.
DOI: 10.6084/m9.figshare.27216447.v1
title: Degradable Poly(β-amino ester) Microparticles for Cleansing Products and Food Fortification, Nature Chemical Engineering, 2024.

description: Supplementary data for Linzixuan Zhang, et al., Degradable Poly(β-amino ester) Microparticles for Cleansing Products and Food Fortification, Nature Chemical Engineering, 2024.
DOI: 10.6084/m9.figshare.29143565.v1
title: Table S3_Sites and coordinates for Map from Historical Ecology of the Southern Central American Pacific Coast

description: The GPS coordinates and sites used to make Figure 1.
DOI: 10.6084/m9.figshare.29144900.v2
title: A study on the “Influence of developing early leadership skills during the<b>education phase and its impact into success in corporate jobs for students in</b>Bangalore

description: This doctoral research explores the impact of developing leadership skills during the school and college years on long-term corporate success. Using a mixed-methods approach, the study surveyed 143 students and 186 corporate professionals in Bangalore, analyzing how early exposure to leadership roles and extracurricular activities correlates with critical workplace competencies such as decision-making, communication, and project management. The findings provide insights for educators, HR leaders, and policymakers to embed leadership training in curricula and corporate talent pipelines.
DOI: 10.6084/m9.figshare.12142113.v2
title: Table S1

description: Table S1- a spreadsheet with multiple tabs including Supplemental data and results.
DOI: 10.6084/m9.figshare.1263705.v1
title: Assessing the impact of afforestation on soil organic C sequestration by means of sequential density fraction

description: The original data of article "Assessing the impact of afforestation on soil organic C sequestration by means of sequential density fraction" in PLOS ONE
DOI: 10.6084/m9.figshare.13181213.v1
title: Supplementary Material for: Trichostatin A Induces Autophagy in Cervical Cancer Cells by Regulating the PRMT5-STC1-TRPV6-JNK Pathway

description: <b><i>Objective:</i></b> The aim of this study was to investigate the effects of trichostatin A (TSA) on cervical cancer and the related mechanisms. <b><i>Methods:</i></b> The HeLa and Caski cervical cancer cell lines were treated with different concentrations of TSA. Cell viability was measured by MTT assays. Cell apoptosis was analysed using flow cytometry. Expression of transient receptor potential cation channel, subfamily V, member 6 (TRPV6), protein arginine methyltransferase 5 (PRMT5), and stanniocalcin 1 (STC1) was determined by qRT-PCR and Western blotting. Protein levels of LC3 II/I, beclin1, p62, JNK, and p-JNK were detected by Western blotting. <b><i>Results:</i></b> Treatment with TSA significantly decreased HeLa and Caski cell viability and enhanced the apoptosis rate in a dose-dependent manner. TSA markedly elevated beclin1 protein levels and the LC3 II/I ratio and significantly reduced p62 levels in a dose-dependent manner. In addition, TSA (1 μM) significantly suppressed PRMT5 and TRPV6 levels and enhanced STC1 and p-JNK levels. The lysosomal inhibitor bafilomycin-A1 synergistically enhanced the TSA-mediated increase in autophagic flux. Either the overexpression of TRPV6 or the inhibition of JNK signalling markedly enhanced cell viability, inhibited apoptosis, and autophagy and reduced p-JNK levels in TSA-treated cells. The inhibition of STC1 significantly increased TRPV6 protein levels and reduced p-JNK levels. Overexpression of PRMT5 dramatically decreased STC1 and p-JNK protein levels and increased TRPV6 levels. <b><i>Conclusion:</i></b> TSA suppresses cervical cancer cell proliferation and induces apoptosis and autophagy through regulation of the PRMT5/STC1/TRPV6/JNK axis.
DOI: 10.6084/m9.figshare.25770255.v1
title: Experiments on mobilization of coarse sediment by finer sediment

description: In rivers, the addition of finer sediment to a coarser riverbed is known to increase the mobility of the coarser fraction. Here we report on experiments results using two sediment mixtures to better understand this phenomenon.
DOI: 10.17632/5tz5fgjmxg
title: Why Do Portfolio Choice Models Predict Inelastic Demand?

description: Replication Code and Data for “Why Do Portfolio Choice Models Predict Inelastic Demand?” by Carter Davis, Mahyar Kargar, and Jiacui Li.
DOI: 10.6084/m9.figshare.28130957.v1
title: <b>Argentometric Determination of Chloride content in Tape water at Gimba city Administration, South wollo, Ethiopia</b>

description: The <b>Argentometric Determination of Chloride Content in Tap Water at Gimba City Administration, South Wollo, Ethiopia</b> refers to a scientific analysis aimed at determining the concentration of chloride ions (Cl⁻) in the tap water supplied to residents of Gimba City, located in the South Wollo zone of Ethiopia. This type of study typically involves the use of argentometric methods, which are based on the precipitation of chloride ions with a silver nitrate (AgNO₃) solution.
DOI: 10.6084/m9.figshare.7906841.v1
title: gVCF_NA18978

description: 1000 Genomes gVCF mapped to hs37d5 for NA18978. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.8009621.v1
title: Qualitative Network Model with interaction inequality conditions

description: R code and associated data files for analyzing Qualitative Network Models that can include inequality conditions between pairs of interactions. Open "bkcQNM.R" in a script editor to get started.
DOI: 10.17632/4bfs4rr3m6
title: EDUBOT: A comprehensive General Science Question Answering Dataset in Bangla Language

description: Chatbots are increasingly being used for a wide range of services that require interaction in natural language processing. Working with Bangla Natural Language Processing (NLP) is a notable challenge in Bangladesh due to the complexity of the language. To address this, Edubot is created as an educational tool designed to facilitate the development of a question-answering system in the Bangla language, specifically focused on general science topics. This dataset is intended to support the creation of educational tools capable of answering science-related questions in Bangla, covering subjects such as biology, chemistry, physics, and environmental science.

We developed a comprehensive dataset comprising 3,379 questions paired with answers related to general science, all presented in the Bangla language. The data is structured into two columns and is available in CSV format for ease of use.

The dataset includes the following key components:
1. The dataset gathers a variety of resources, including textbooks, articles, and other educational materials.
2. Questions are developed to evaluate comprehension and strengthen understanding of general science concepts.
3. Edubot provides each general science question with a clear, accurate answer, along with the answer's starting position in the dataset for easy reference and verification.

This dataset is highly beneficial for advancing research and development in Bangla NLP, particularly in creating machine learning and artificial intelligence-driven educational chatbots and conversational AI systems.
DOI: 10.6084/m9.figshare.12808547.v1
title: Dataset.rar

description: 1) State wise daily new COVID-19 incidence2) State wise daily testing number<br>The datasets are in .CSV format.
DOI: 10.6084/m9.figshare.13027991.v1
title: Sample list and barcode

description: list of sample and their barcode
DOI: 10.6084/m9.figshare.16965439.v1
title: Danish landslide inventory 211104

description: <b>Abstract</b> Landslides are a frequent natural hazard occurring globally in regions with steep topography. Additionally, landslides are playing an import role in landscape evolution by transporting sediment downslope. Landslide inventory mapping is a common technique to assess the spatial distribution and extend of landslides in an area of interest. High-resolution digital elevation models (DEMs) have proven to be useful databases to map landslides in large areas across different land covers and topography. So far, Denmark had no national landslide inventory. Here we create the first comprehensive national landslide inventory for Denmark based on a 40 cm resolution DEM from 2015 supported by several 12.5 cm resolution orthophotos. The landslide inventory is based on a manual expert based mapping approach and we implemented a quality control mechanism to assess the completeness of the inventory. Overall, we mapped 3202 landslide polygons in Denmark with a level of completeness of 87%.<br>
DOI: 10.6084/m9.figshare.19168490.v1
title: Data for "The dimension and impact of research biases in species and habitat conservation"

description: The figshare folder contains the following files:<br>life_script.R &gt; commented R script filehbt_db &gt; habitats databaseplant_species.csv &gt; plant species databasespecies_db2 &gt; animal and plant sacies database extracted from the study Mammola et al., 2020 (doi: 10.1098/rspb.2020.2166rspb20202166)
DOI: 10.6084/m9.figshare.28590289.v1
title: Dynamic Regression of Longitudinal Trajectory Features

description: Chronic disease studies often collect data on biological and clinical markers at follow-up visits to monitor disease progression. Viewing such longitudinal measurements governed by latent continuous trajectories, we develop a new dynamic regression framework to investigate the heterogeneity pattern of certain features of the latent individual trajectory that may carry substantive information on disease risk or status. Employing the strategy of multi-level modeling, we formulate the latent individual trajectory feature of interest through a flexible pseudo B-spline model with subject-specific random parameters, and then link it with the observed covariates through quantile regression, avoiding restrictive parametric distributional assumptions that are typically required by standard multi-level longitudinal models. We propose an estimation procedure from adapting the principle of conditional score and develop an efficient algorithm for implementation. Our proposals yield estimators with desirable asymptotic properties as well as good finite-sample performance as confirmed by extensive simulation studies. An application of the proposed method to a cohort of participants with mild cognitive impairment (MCI) in the Uniform Data Set (UDS) provides useful insights about the complex heterogeneous presentations of cognitive decline in MCI patients.
DOI: 10.6084/m9.figshare.28930016.v1
title: Fail Prediction

description: Continuous Integration (CI) is a development practice where developers regularly merge their code changes into a central repository, enabling simultaneous collaboration across a shared codebase. This frequent integration and automated building process in CI helps to detect and resolve conflicts or errors early in development. However, in large-scale systems, the build process can be costly. Each build incurs expenses, while skipping builds can increase the risk of undetected failures. This paper presents an empirical study within an industrial setting, investigating the use of machine learning techniques to predict build failures. Accurate predictions can help to identify builds that can be safely skipped to reduce CI costs. We evaluate various models and feature combinations on a dataset derived from real-world industrial projects. We observe high precision but low recall in predicting failed builds, allowing hundreds of successful builds to be correctly skipped, with around a dozen failures potentially being missed.
DOI: 10.6084/m9.figshare.5123602.v1
title: Supplementary Material for: The Gastrointestinal Pharmacology of Cannabinoids: Focus on Motility

description: The marijuana plant <i>Cannabis</i> sp. and its derivatives and analogues, known as cannabinoids (CBs), induce many effects throughout the whole body. Herein we briefly review the gastrointestinal (GI) pharmacology of CBs, with special focus on motor function. Some drugs are available to treat nausea and emesis, and evidences in humans and animal models suggest that other GI motility alterations (<i>gastro-oesophageal</i> reflux, inflammatory bowel conditions or paralytic ileus) might benefit from modifications of the CB tone throughout the gut. However, central and peripheral (including GI) side effects may occur upon acute and chronic CB administration. Hopefully, the ongoing worldwide intense research on CBs will soon provide new, safer CB-based medicines.
DOI: 10.6084/m9.figshare.6667409.v1
title: Nanopore sequencing of cassava from Tanzania, Uganda and Kenya

description: Please see: https://www.biorxiv.org/content/early/2018/05/04/314526Included are the .fasta files for each sample.
DOI: 10.17632/53yc2mj25y
title: crop data koraput 2008-2018

description: Primary data of vegetable cultivation area and production amount, from 2008-2018, of 5 tribal dominated village of Koraput / Odisha/India
DOI: 10.6084/m9.figshare.22709746.v1
title: PHENOLOCS AND FLAVONOIDS.xlsx

description: These data belong to the project of "<strong>Comparison of extraction methods for bioactive compounds </strong> <strong>from waste artichoke leaves and analysis of their antioxidant and antimicrobial properties".</strong>
DOI: 10.6084/m9.figshare.22722514.v1
title: Hurghada TMY data.csv

description: The dataset includes Typical Meteorological Year (TMY) data of Hurghada, Egypt. It includes hourly averaged data of GHI, Dry bulb temperature, Relative humidity, Wind speed, Sky temperature, Dew point temperature. The data source is from EnergyPlus website.
DOI: 10.6084/m9.figshare.25131071.v1
title: Sequencing Data

description: AP1_1.gz and AP1_2.gz represent the paired-end sequencing results of the first oligo pool, while AP2_1.gz and AP2_2.gz correspond to the paired-end sequencing results of the second oligo pool.
DOI: 10.17632/cvvpfgcmcg
title: প্রেমের বহুমুখী মাত্রার অন্বেষণ: বাংলা ছোটগল্পে রবীন্দ্রনাথ ঠাকুরের অগ্রণী ভূমিকার একটি অধ্যয়ন

description: সংক্ষিপ্তসার:
রবীন্দ্রনাথ ঠাকুর বাংলা ছোটগল্পের একজন অগ্রগামী ব্যক্তি ছিলেন। তিনি প্রকাশ করেছেন প্রেম, সুখ দুঃখ, কষ্ট, আবেগ, দৈনন্দিন গ্রামীণ জীবনের তুচ্ছ ঘটনা। প্রেম তার ছোটগল্পে গুরুত্বপূর্ণ ভূমিকা পালন করেছে। তিনি বিভিন্ন আইকন এবং ভালবাসার অভিব্যক্তি স্কেচ করেছেন। তিনি ভালোবাসার বিভিন্ন আঙ্গিকে প্রকাশ করার চেষ্টা করেছেন যেমন, প্রেমের নির্জনতা, প্রেমের নীরবতা, প্রকৃতির প্রেম, ব্যর্থ প্রেম, প্রেমের প্রতি অবিশ্বাস ইত্যাদি। তিনি সর্বদা প্ল্যাটোনিক প্রেমকে সেক্সে সমর্থন না করার জন্য আলোকিত করেছিলেন। এই গবেষণাপত্রে আমি ঠাকুরের ছোটগল্প অনুসারে প্রেমের কিছু গুরুত্বপূর্ণ বৈশিষ্ট্য অনুসন্ধান করেছি।
মূল শব্দ: রবীন্দ্রনাথ ঠাকুর, ছোট গল্প, প্রেম।
DOI: 10.25452/figshare.plus.24272356.v1
title: Gut microbial structural variation profile

description: Data accompanying the paper by Zhernakova <em>et al.</em> "Host Genetic Regulation of Human Gut Microbial Structural Variation", Nature 2023. We used SGV-Finder (Zeevi <em>et al.</em>, 2019) to generate SV profiles from human gut metagenomic sequencing data of 9,015 Dutch and 279 Tanzanian individuals. In total, we detected 14,196 SVs in 108 gut microbial species, including 10,265 deletion SVs and 3,931 variable SVs. File description: dSV_profile.txt.gz : deletion SV profiles vSV_profile.txt.gz : variable SV profiles. dSV_annotation.txt.gz : annotation of dSVs including taxonomy id; kbp coordinates of the SV in column "SV_ID"; and genes located in the SV vSV_annotation.txt.gz : annotation of vSVs including taxonomy id; kbp coordinates of the SV in column "SV_ID"; and genes located in the SV <em>See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.6877849</em> <strong>Funding statement</strong><br> This study is supported by Netherlands Organization for Scientific Research (NWO)-VICI grant VI.C.202.022 (J.F.), NWO-VIDI grant 016.178.056 (A.Z.), NWO-VENI grant 194.006 (D.V.Z.), NWO-VENI grant 222.016 (D.W.), European Research Council (ERC)-Consolidator grant 101001678 (J.F.), ERC Starting Grant 715772 (A.Z.), and Dutch Heart Foundation grant IN-CONTROL (CVON2018-27 to J.F., A.Z., M.G.N., L.A.B.J., J.H.W.R, N.P.R). In addition, C.W. and J.F. are supported by the Netherlands Organ-on-Chip Initiative, an NWO Gravitation project (024.003.001) funded by the Ministry of Education, Culture and Science of the government of the Netherlands. J.F. is supported by the AMMODO Science Award 2023 for Biomedical Sciences from Stichting Ammodo. A.Z. is further supported by the NWO Gravitation grant Exposome-NL (024.004.017), and EU Horizon Europe Program grant INITIALISE (101094099). The 300TZ cohort received funding from the Joint Programming Initiative, A Healthy Diet for a Healthy Life (JPI‐HDHL; project 529051018, TransMic) and ZonMw (the Netherlands Organization for Health Research and Development). S.S. is supported by Next Generation EU grant Project Age-It (DM MUR 1557 11.10.2022), ERC Starting Grant 2022 (101075624), and NutrAGE grant (DM MUR 844 16.07.2021). R.K.W. is supported by the Seerave foundation and NWO. L.L. is supported by a joint fellowship from the University Medical Center Groningen and China Scholarship Council (CSC) with grant number CSC201908320432. Y.Z. is supported by a joint fellowship from the University Medical Center Groningen and CSC with grant number CSC202006170040. N.P. is supported by a grant of the Graduate School of Medical Sciences of the University of Groningen, the Netherlands. H.P is supported by a joint fellowship from the University Medical Center Groningen and CSC with grant number CSC202208060107.
DOI: 10.6084/m9.figshare.11452338.v1
title: Ways and Voices of the Affect

description: Abstract Ways and Voices of the AffectThe article analyses the different treatments of affect in the field of semiotic researches opened by Greimas. It highlights the premises, their developments, their disappearances and their resurgences, and more generally the complementarities and solidary derivations. In Sémantique Structurale, Greimas already posed some milestones with the thymic category and proprioceptivity. Much later, the theory of passions will encounter tensiveness, and Claude Zilberberg will even make affect the point of origin of all tensiveness. Then arrives the contribution of Eric Landowski, who, under the heading of “feeling” (l’éprouver), renders obsolete the distinction between lexicalized passions (nameable) and “passions without names”. The proposals of Jacques Geninasca, Herman Parret and more recently Waldir Beividas will also be evoked. But above all we shall insist on the path developed by Greimas himself in De l’Imperfection, starting from the esthetic experience in existence itself.
DOI: 10.6084/m9.figshare.22588963.v7
title: Prediction of bacterial pH preferences using machine learning

description: This code includes hyperparameter optimization and evaluation of a boosted regression model to predict bacterial pH preferences using information on the presence/absence of functional genes in bacterial genomes. For a more detailed description of the approach see https://github.com/fiererlab/ph_preference/blob/main/Whole_FeatureSelection_Final.ipynb. <br> Important file descriptions: <br> load_and_run_pH_model.ipynb is the notebook required to run the model. pH_model_2022-10-17_56_full.sav is the model file (trained on the data from this study). Readme.txt specifies how to set up an environment with the dependencies found in environment.yaml, which are required to run the notebook and model.
DOI: 10.6084/m9.figshare.24431866.v1
title: 数据.xls

description: 该数据库存储有关中国美国对越南地缘政治影响的数据，有关越南对中国和美国对冲的性质和强度的数据，以及有关实施对冲越南倾向的数据。
DOI: 10.6084/m9.figshare.28660880.v3
title: Dataset for manuscript “Mitigating Erosion and Clogging through MICP”

description: This dataset originates from microfluidic experiments designed to evaluate the effectiveness of Microbially Induced Carbonate Precipitation (MICP) in reinforcing weakly consolidated sandstone reservoirs. The experiments simulate geological CO<sub>2</sub> storage conditions and investigate the interactions among biomineralization, sand migration, and acidic dissolution. Key findings highlight MICP’s role in enhancing erosion resistance through cementation, buffering acidic dissolution effects, and regulating clogging dynamics. The dataset provides quantitative insights into MICP-induced structural stabilization, offering a basis for optimizing reservoir integrity and injectivity in CO<sub>2</sub> storage applications.
DOI: 10.6084/m9.figshare.3082150.v1
title: Example Arabidopsis DNA sequencing data and genome sequence

description: FASTA formatted sequence data for chromosome 1 of Arabidopsis (circa 2009 assembly), and FASTQ formatted sequence read data (25,000 reads).<br><br>Originally downloaded from:<br><br>http://biocluster.ucr.edu/~tbackman/genome.fasta<br>