cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7717823.v1
title: Supplementary Material for: <b><i>Panax notoginseng</i></b> Saponins Ameliorate Leukocyte Adherence and Cerebrovascular Endothelial Barrier Breakdown upon Ischemia-Reperfusion in Mice

description: <i>Panax notoginseng</i> saponins (PNS) are known as clinical anti-stroke herbal medicines. The aim of this study is to describe the impact of PNS on ischemia-reperfusion-induced cerebral microvasculature barrier dysfunction which has not been investigated yet. Mice were subjected to transient middle cerebral artery occlusion and PNS were administrated to mice 3 days before and 2 days after surgery. Leukocyte adhesion, albumin leakage, tight junctions and other parameters in the cortex were measured. The PNS 45 mg/kg intervention alleviated leukocyte adhesion, inhibited endothelial barrier alterations evidenced by reduced albumin leakage and tight junction degradations, and ultimately ameliorated infarct volumes and neurological deficits subsequent to ischemia-reperfusion. Taken together, <i>P. notoginseng</i> saponins are able to attenuate leukocyte-mediated microvascular disturbance at the onset of ischemic stroke.
DOI: 10.6084/m9.figshare.14669970.v1
title: Ph D Thesis Appendix Rstudio Code

description: The processes determining dissolved organic carbon (DOC) character and concentration in groundwater in different geological environments<br>
DOI: 10.6084/m9.figshare.5104519.v1
title: Supplementary Material for: Global Gene Expression Profiling of <i>Bacillus subtilis</i> in Response to Ammonium and Tryptophan Starvation as Revealed by Transcriptome and Proteome Analysis

description: The global gene expression profile of <i>Bacillus subtilis</i> in response to ammonium and tryptophan starvation was analyzed using transcriptomics and proteomics which gained novel insights into these starvation responses. The results demonstrate that both starvation conditions induce specific, overlapping and general starvation responses. The TnrA regulon, the glutamine synthetase (<i>glnA</i>) as well as the σ<sup>L</sup>-dependent <i>bkd</i> and <i>roc</i> operons were most strongly and specifically induced after ammonium starvation. These are involved in the uptake and utilization of ammonium and alternative nitrogen sources such as amino acids, γ-aminobutyrate, nitrate/nitrite, uric acid/urea and oligopeptides. In addition, several carbon catabolite-controlled genes (e.g. <i>acsA</i>, <i>citB</i>), the α-acetolactate synthase/-decarboxylase <i>alsSD </i>operon and several aminotransferase genes were specifically induced after ammonium starvation. The induction of σ<sup>F</sup>- and σ<sup>E</sup>-dependent sporulation proteins at later time points in ammonium-starved cells was accompanied by an increased sporulation frequency. The specific response to tryptophan starvation includes the TRAP-regulated tryptophan biosynthesis genes, some RelA-dependent genes (e.g. <i>adeC, ald</i>) as well as <i>spo0E</i>. Furthermore, we recognized overlapping responses between ammonium and tryptophan starvation (e.g. <i>dat</i>, <i>maeN</i>) as well as the common induction of the CodY and σ<sup>H</sup> general starvation regulons and the RelA-dependent stringent response. Many genes encoding proteins of so far unknown functions could be assigned to specifically or commonly induced genes.
DOI: 10.6084/m9.figshare.7211570.v1
title: Dataset for: Clade-specific evolutionary diversification along ontogenetic major axes in avian limb skeleton

description: The evolutionary diversification of birds has been facilitated by specializations for various locomotor modes, with which the proportion of the limb skeleton is closely associated. However, recent studies have identified phylogenetic signals in this system, suggesting the presence of historical factors that have affected its evolutionary variability. In this study, in order to explore potential roles of ontogenetic integration in biasing the evolution in the avian limb skeleton, evolutionary diversification patterns in six avian families (Anatidae, Procellariidae, Ardeidae, Phalacrocoracidae, Laridae, and Alcidae) were examined and compared to the postnatal ontogenetic trajectories in those taxa, based on measurement of 2641 specimens and recently collected ontogenetic series, supplemented by published data. Morphometric analyses of lengths of six limb bones (humerus, ulna, carpometacarpus, femur, tibiotarsus, and tarsometatarsus) demonstrated that: 1) ontogenetic trajectories are diverse among families; 2) evolutionary diversification is significantly anisotropic; and, most importantly, 3) major axes of evolutionary diversification are correlated with clade-specific ontogenetic major axes in the shape space. These results imply that the evolutionary variability of the avian limbs has been biased along the clade-specific ontogenetic trajectories. It may explain peculiar diversification patterns characteristic to some avian groups, including the long-leggedness in Ardeidae and tendency for flightlessness in Anatidae.
DOI: 10.6084/m9.figshare.12999419.v2
title: Metadata record for the manuscript: High-Throughput Preparation of Radioprotective Polymers via Hantzsch’s Reaction for In Vivo X-ray Damage Determination

description: These data support the related manuscript: “High-Throughput Preparation
of Radioprotective Polymers via Hantzsch’s Reaction for <i>In Vivo</i> X-ray Damage Determination”.

The data consist of a single Excel .xlsx format spreadsheet with 15
tabs, where each tab contains all reported means/averages in plots, charts, and tables underlying figures, subfigures,
supplementary figures, or supplementary subfigures in the related manuscript. The figures and supplementary figures covered are: Figures 3, 5d, 6b, 6c, 7b and Supplementary Figures S6, S7, S8b, S9, S10b, S11a, S11b, S14a, S15b, S18.

The related study developed a new strategy to explore safe and
efficient radioprotectors for acute injuries caused by large doses of ionizing
radiation by combining Hantzsch’s reaction, high-throughput methods and polymer
chemistry.Version 2 corrects some flaws that were found in the source data file prior to the manuscript being published.<br>
DOI: 10.6084/m9.figshare.14803377.v1
title: Data for Tourism depedency and economic shock paper.xlsx

description: This data set contains data on the following variables: economic shock1 (difference in 2020 real GDP forecast before and after Covid-19), economic shock 2 (real GDP for 2020 less 2019 real GDP), tourism as share of exports, employment, GDP, Natural resources rent as share of GDP (2017-2019) average, remittances as share of GDP (2017-2019) average, debt as share of GDP (2019) for 37 small island developing states.
DOI: 10.6084/m9.figshare.28738259.v2
title: L'utilisation de la robotique social en ergothérapie vers une participation occupationnelle accrue

description: <b>Importance</b>: Although with the shortage of human resources utilization of robots is promising, no integration of knowledge has been carried out in the field of occupational therapy. <b>Objective</b>: To synthesize knowledge published since 2014 of robot-assisted occupational therapy interventions to globally foster occupations (excluding exoskeletons and prosthesis).<b> </b><b>Data Sources:</b><b> </b>The method of Arksey and O’Malley was used to search in seven databases. with five keywords about occupational therapy and robotics. <b>Study Selection and Data Collection</b>: Data from selected studies on robot-assisted occupational therapy practice were extracted for: research context, interventions and results. <b>Findings</b>: Among the seventeen articles selected, almost half targeted children (41.2%), especially with autism, and five involved older adults (29.4%). Most papers (9; 52.9%) reported that participants were satisfied of the intervention with the robot but three studies reported unsatisfaction (17.6%). <b>Conclusions and Relevance</b>: Robot-assisted interventions are emerging in OT with individuals of all ages and conditions. Promising, the potential of these interventions should be studied for broader applications, <i>e.g.</i>, occupational development and environmental modifications.
DOI: 10.17632/gyy8pj9n36
title: LEVELS OF SUICIDALITY: A STUDY OF STUDENTS IN KENYA MEDICAL TRAINING COLLEGE

description: The increasing suicide cases among university and college students all over Kenya is alarming. The purpose of this study was to examine the level of suicidality among students in Kenya Medical Training College. The study was done among a sample comprising 372 participants Data were analyzed using Statistical Package for Social Sciences (SPSS) version 20. The results show the average scores for the participants were 7.8 for suicide ideation; 7.1 for suicide behavior, and 3.6 for suicide attempts. Therefore, the average levels of suicidality for the participants were moderate for both suicide ideation and suicidal behavior, but low for a suicide attempt. This implies that a moderate number of students have suicide ideas and behaviors, but only a few have attempted to commit suicide.  aged between 17 and 25 years. Data was collected using a suicidality assessment tool which assessed participants’ suicidality in terms of suicide ideation, suicide behaviours, and suicide attempts.
DOI: 10.6084/m9.figshare.16973101.v1
title: NIRS data of pine and oak wood species

description: Data of PhD thesis: NIRS data of wood species.<br>Pines: Pinus sylvestris- Pinus nigraOaks : Quercus frainetto - Quercus petraea<br>For extra information: https://avesis.istanbulc.edu.tr/fdigdemt/documents<br>Thesis title: Utilization of near infrared spectroscopy in wood identification, Yakın kızılötesi spektroskopisinin Odun Teşhisinde Kullanımı<br>
DOI: 10.6084/m9.figshare.5334544.v1
title: Factors influencing the severity of anaphylaxis

description: This dataset contains clinical symptoms of anaphylaxis, the Ring and Messmer as well as NIAID/FAAN severity grading systems scores for each case, and potentially clinically relevant co-factors of hypersensitivity reactions.
DOI: 10.6084/m9.figshare.21717479.v1
title: Monte carlo - V 3 10 30.xlsx

description: Monte Carlo method applied for the examination of the effect of extraction patterns on exposure to groundwater pollution at high pore water velocities.
DOI: 10.6084/m9.figshare.13568186.v2
title: Genomics reveals seahorses’ global dispersal routes and elucidates the genetics underlying a convergent adaptive trait

description: A new seahorse genome and the re-sequenced genomes of 21 other species shed new light on the evolutionary origins and global dispersal routes of seahorses, and shows that bony spines- a key adaptation against predation – probably evolved multiple times via by independent substitutions in the bmp3 gene.
DOI: 10.6084/m9.figshare.9724595.v1
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Molecular Dynamics Trajectories

description: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: <br>Truncated MD trajectories in pdb format<br>
DOI: 10.6084/m9.figshare.4983116.v1
title: Flavivirus traits + key.xlsx

description: Flavivirus-related covariates and keys
DOI: 10.6084/m9.figshare.26809105.v4
title: Supplementary Material for: GOLD-grade specific disease characterization and phenotyping of COPD using quantitative computed tomography in the nationwide COSYCONET multicenter trial in Germany

description: Abstract
Introduction: To apply quantitative computed tomography (QCT) for GOLD-grade specific disease characterization and phenotyping of air-trapping, emphysema, and airway abnormalities in patients with chronic obstructive pulmonary disease (COPD) from a nationwide cohort study.
Methods: As part of the COSYCONET multicenter study, standardized CT in ex- and inspiration, lung function assessment (FEV1/FVC) and clinical scores (BODE index) were prospectively acquired in 525 patients (192women, 327men, aged 65.7±8.5y) at risk for COPD and at GOLD1-4. QCT parameters total lung volume (TLV), emphysema index (EI), parametric response mapping (PRM) for emphysema (PRMEmph) and functional small airway disease (PRMfSAD), total airway volume (TAV), wall percentage (WP) and total diameter (TD) were computed using automated software.
Results: TLV, EI, PRMfSAD and PRMEmph increased incrementally with each GOLD grade (p&lt;0.001). Aggregated WP5-10 of subsegmental airways was higher from GOLD1 to GOLD3 and lower again at GOLD4 (p&lt;0.001), whereas TD5-10 was significantly dilated only in GOLD4 (p&lt;0.001). 58 patients were phenotyped as 'non-airway non-emphysema type', 202 as 'airway type', 96 as 'emphysema type' and 169 as 'mixed type'. FEV1/FVC was best in 'non-airway non-emphysema type' compared to other phenotypes, while 'mixed type' had worst FEV1/FVC (p&lt;0.001). BODE index was 0.56±0.72 in the 'non-airway non-emphysema type' and highest with 2.55±1.77 in 'mixed type' (p&lt;0.001).
Conclusion: QCT demonstrates increasing hyperinflation and emphysema dependent on GOLD grade, while airway wall thickening increases until GOLD 3 and airway dilatation occurs in GOLD4. QCT identifies four disease phenotypes with implications for lung function and prognosis.
DOI: 10.6084/m9.figshare.3515282.v1
title: Index Files

description: Index Files
DOI: 10.6084/m9.figshare.16810558.v1
title: Supplementary Material for: Deep Brain Stimulation of the Pallidofugal Pathways to Rescue Severe Life-Threatening Dyskinesias after STN-DBS Lead Implantation

description: We present a patient with severe life-threatening dyskinesias due to a persistent microlesion effect after STN-DBS electrode implantation. The pallidofugal pathways were identified using patient-specific tractography, and steering the current toward this white matter structure resulted in complete resolution of the severe dyskinesias.
DOI: 10.6084/m9.figshare.22596052.v1
title: Tenebrio, temperature and courtship PLOS One

description: These are the data that describe the relation between temperature and courtship behavior in tenebrio beetles
DOI: 10.6084/m9.figshare.28208342.v1
title: BiotaConc_Raw.xlsx

description: Supporting data containing whole body contaminant concentrations in target terrestrial biota for an accumulation study conducted in the Savannah River Site from 2021-2023.
DOI: 10.60893/figshare.pof.28141463.v1
title: Supplement Number 3

description: Model prediction validation
DOI: 10.6084/m9.figshare.22698094.v1
title: Decoupling occurs under extreme heat

description: Our study had a glasshouse and a field component. The glasshouse study provided the opportunity to better control water availability, while the field study provided observations of tall trees in the field. The glasshouse experiment examined responses to a five-day heatwave under controlled conditions, with a direct comparison of well-watered and droughted conditions using a gradual, moderate drought stress. Four treatments include: C, control; D, drought; C+HW, control + heatwave; D+HW, drought + heatwave. In the field, we took advantage of naturally-occurring extreme heatwaves to compare <i>in situ</i> responses of urban trees in Sydney, Australia during the hottest and driest year on record (2019). We investigated if there is evidence for decoupling of stomatal conductance (g<sub>s</sub>) from net photosynthesis (A<sub>net</sub>) in 26 different broadleaf tree or shrub species (n=4-8 trees per species) by measuring leaf gas exchange on hot days (maximum air temperature &gt;40 °C). For more details, see associated publication in Global Change Biology (link below).
DOI: 10.6084/m9.figshare.26172718.v1
title: Supplementary Material for: Finding the Balance: Venous Thromboembolism Prophylaxis during Hematochezia in Crohn’s Disease

description: Introduction: Despite heightened risk of venous thromboembolism (VTE) in hospitalized patients with inflammatory bowel disease (IBD), pharmacologic prophylaxis remains underutilized, particularly in those presenting with hematochezia. Although placement of retrievable inferior vena cava filters (rIVCF) may be considered in those with contraindications to anticoagulation and VTE risk, current recommendations from clinical guidelines are incongruent, leading to wide variation in practice. 
Case Report: This report highlights a case of rIVCF used in the management of recurrent VTEs in a patient hospitalized for persistent gastrointestinal bleeding.
Conclusion: Our case demonstrates the need for a lower threshold for initiating VTE prophylaxis in patients with active inflammatory bowel disease, even when hematochezia is the presenting symptom. A small group of patients with recurrent VTE and clear contraindications to anticoagulation may require IVCFs, necessitating close follow-up and monitoring for filter complications.
DOI: 10.6084/m9.figshare.25296202.v1
title: Data and code from: Fire facilitates ground layer plant diversity in a Miombo ecosystem

description: Data and code used in Wieczorkowski, J.D., Lehmann, C.E.R., Archibald, S., Banda, S., Goyder, D.J., Kaluwe, M., Kapinga, K., Larridon, I., Mashau, A.C., Phiri, E., Syampungani, S. (2024) Fire facilitates ground layer plant diversity in a Miombo ecosystem. Annals of Botany. doi.org/10.1093/aob/mcae035
DOI: 10.6084/m9.figshare.28837592.v1
title: <b>Association between sedentary behavior, body mass index and hyperuricemia: Mediation analysis based on NHANES and Mendelian randomization analysis</b>

description: We conducted a cross-sectional study from the National Health and Nutrition Examination Survey (NHANES) collected from 2007 to 2018, with a sample size of 17,764 participants. A weighted multivariate logistic regression model and restricted cubic spline (RCS) analysis were employed associations between sedentary behavior and HUA. Mediation analysis was conducted to determine the mediating role of BMI.Additionally, Mendelian randomization (MR) was used to investigate causal relationships.
DOI: 10.6084/m9.figshare.28862063.v1
title: Carbon captured by winter fallow weeds and its effect on soil carbon content in rice cropping systems

description: To evaluate the C capture capacity of winter fallow weeds and the impact of C inputs from these weeds on soil C content in rice cropping systems, on-farm investigations were carried out in Hunan Province, China, during 2022 and 2023, alongside a fixed field experiment in the region from 2020 to 2024.
DOI: 10.6084/m9.figshare.3397603.v6
title: Custom toolbars and mini applications with Action Bar

description: The Action Bar ImageJ plugin facilitates creation of additional custom toolbars, using simple macro-like toolbar description file. Readers will learn how to setup a basic action bar, and how to use the latest features of this plugin. Button actions are basically macro programs, so action bars can interact with all standard ImageJ components. Primary use of these custom toolbars is to keep at hand often used commands, plugins and macros, but toolbars sets can be turned into mini applications with minimal effort. With these highly task-oriented applications, end users can focus on just using a simple system with absolutely no prior knowledge of ImageJ. This paper is aimed at ImageJ users with some previous experience with the macro language. This is the support material for a workshop I first gave at the 2008 ImageJ conference in Luxembourg.
DOI: 10.6084/m9.figshare.21753803.v1
title: SourceDataFigure3.xlsx

description: The TR-moke source data of Figure 3.
DOI: 10.6084/m9.figshare.25195535.v1
title: Work related MD in OT

description: <b>Work-Related Musculoskeletal Disorders Among Occupational Therapists in Turkey: A Cross-Sectional Study</b>
DOI: 10.6084/m9.figshare.4570021.v1
title: Supplementary Material for: Anti-PLA2R Antibodies as a Prognostic Factor in PLA2R-Related Membranous Nephropathy

description: <strong><em>Background:</em></strong> The natural course of idiopathic membranous nephropathy (MN) varies, as it is known through favorable outcomes in most patients. However, one third of patients with idiopathic MN will slowly progress to end-stage renal disease (ESRD). To prevent disease progression, patients at high risk to develop ESRD are treated with immunosuppressive agents. Therefore, a correct selection of patients who need immunosuppressive treatment is important. <b><i>Methods:</i></b> Here, we evaluated the prognostic value of anti-phospholipase A2 receptor 1 antibody (anti-PLA2R) levels regarding clinical outcome in a well-defined cohort of 73 PLA2R-related MN patients with long-term follow-up. At baseline, patients were subdivided into patients with either low or high antibody levels based on ELISA testing. <b><i>Results:</i></b> Spontaneous remission rates were highest among patients with low anti-PLA2R levels (79%; hazard ratio 2.72 (95% CI 1.22-6.08), p = 0.02) after a median follow-up of 2.9 (95% CI 0.8-5.0, p &lt; 0.001) years, whereas high anti-PLA2R levels were associated with persistent proteinuria (p = 0.04) and/or the need for immunosuppressive therapy (p &lt; 0.001). Renal survival rates were 97% at 5 years, 93% at 10 years, and 89% at 15 years; however, this was not different between the anti-PLA2R groups. ESRD occurred significantly faster in patients with severe proteinuria as compared to patients with either mild (p = 0.02) or moderate proteinuria (p = 0.05). <b><i>Conclusions:</i></b> Low anti-PLA2R levels may predict spontaneous remissions in patients with PLA2R-related MN. Therefore, we suggest that quantification of anti-PLA2R is of value to monitor these patients.
DOI: 10.6084/m9.figshare.26801122.v1
title: Available_upon_publication.txt

description: This effort is an attempt to develop a cost-effective genotyping system by using the Tecan Allegro Targeted Resequencing V2 kit. This provides customed probe design, whcich can be modified by adding or dropping target sequences. SNPs obtained from previous peanut next generation sequencing data were pre-filtered and selected as targets. These SNP targets were polymorphic among different tetraploid accessions and were selected to be distinguishable from paralogs. A total of 5,154 probes were designed to detect 2,770 SNP targets and were tested on 48 accessions, which include some closely related sister lines from a breeding population. The results indicated that this genotyping by targeted resequencing approach reduced the cost from around $28 (SNP chip and GBS) to $18 per sample, while providing polymorphic markers with accurate SNP calls. With this cost-effective genotyping platform, pre-selected SNP markers can be used effectively and routinely for more breeding programs. The data set includes raw reads and a variant call (vcf) file of 48 peanut accessions, sequenced from both ends.
DOI: 10.6084/m9.figshare.28466591.v2
title: Bacterial Spectrum

description: A total of 1161 bacteria were isolated from 954 oncological patients in 1095 BSI episodes.
DOI: 10.6084/m9.figshare.7083254.v1
title: R scripts for Poirier et al Food Microbiome datasetdataset

description: Graphical R scripts based on Phyloseq and ggplot packages for the analysis of Poirier et al Food microbiome dataset<br>
DOI: 10.17632/5kydbjmdhg
title: Data for: Naive and Sophisticated Mixing: Experimental Evidence

description: Naive and Sophisticated Mixing