cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/32bvfw6xhj
title: GCC-GAN and GSN-GAN script and dataset

description: This repository contains the scripts used to develop the GCC-GAN and GSN-GAN models for color normalization in the work:
- Salvi M., Branciforti F., Molinari F., and Meiburger K. M. , "Generative models for color normalization in digital pathology and dermatology: advancing the learning paradigm", Expert Systems with Applications 2024, DOI: 10.1016/j.eswa.2023.123105

Abstract:
Color medical images introduce an additional confounding factor when compared to conventional grayscale medical images: color variability. This variability alludes to potential critical issues of inconsistent evaluation by clinicians and the misinterpretation or suboptimal learning process of automatic quantitative algorithms. To mitigate the potential negative ramifications of color variability, various color normalization strategies have been introduced and have proven to be a powerful tool for standardizing image appearance. Here we present a novel paradigm for the color normalization process that is based on generative adversarial networks (GANs) that can standardize images of digital pathology (stain normalization) and dermatology (color constancy), two foundational research fields in which the acquired images consistently present high color variability. Specifically, we formulate the color normalization task as an image-to-image translation problem, maintaining a pixel-to-pixel correspondence between the original and normalized images. Our approach outperforms existing state of the art methods in both the digital pathology and dermatology clinical fields. Extensive validation was conducted on public datasets to evaluate the effectiveness of color normalization results on completely external test sets. Our framework generalized well on unseen data, showing how it can be effectively included in the pipeline of automatic quantitative algorithms for reducing color variability and hence enhancing final segmentation and/or classification performance. Finally, we publicly release the source code of our models to encourage open science.
DOI: 10.17632/6sz8h6hnpz
title: ExaHyPE: An engine for parallel dynamically adaptive simulations of wave problems

description: ExaHyPE (“An Exascale Hyperbolic PDE Engine”) is a software engine for solving systems of first-order hyperbolic partial differential equations (PDEs). Hyperbolic PDEs are typically derived from the conservation laws of physics and are useful in a wide range of application areas. Applications powered by ExaHyPE can be run on a student’s laptop, but are also able to exploit thousands of processor cores on state-of-the-art supercomputers. The engine is able to dynamically increase the accuracy of the simulation using adaptive mesh refinement where required. Due to the robustness and shock capturing abilities of ExaHyPE’s numerical methods, users of the engine can simulate linear and non-linear hyperbolic PDEs with very high accuracy. Users can tailor the engine to their particular PDE by specifying evolved quantities, fluxes, and source terms. A complete simulation code for a new hyperbolic PDE can often be realised within a few hours — a task that, traditionally, can take weeks, months, often years for researchers starting from scratch. In this paper, we showcase ExaHyPE’s workflow and capabilities through real-world scenarios from our two main application areas: seismology and astrophysics.
DOI: 10.17632/hy29cy2v9f
title: Refinancing Cross-Subsidies in the Mortgage Market

description: This repository contains the code and public version of the data for "Refinancing Cross-Subsidies in the Mortgage Market" by Jack Fisher, Alessandro Gavazza, Lu Liu, Tarun Ramadorai and Jagdish Tripathy.
DOI: 10.17632/xhh4thgrt4
title: Elsevier Author Aid Human Disease Collection, part 4 (Cancers)

description: -----&gt; Human Disease Author Aid Collection combines information about human diseases in standardized, easy-to-navigate overview templates and tables. It includes clinical, molecular, and pharmacological data from several Elsevier's and public sources. Tables are planned to be updated quarterly.

-----&gt; Author Aid Templates can be a helpful guide for authors, researchers, clinicians, and students, especially those interested in rare diseases, because it highlights updates and findings from several sources on one page.

-----&gt; Each disease template overview includes 6 sections: Terminology; Epidemiology/Demographics; Clinical presentation/Diagnosis; Etiology/Pathology (genetics, biomarkers, pathways); Treatment/Follow-Up; Case studies. Each subset of data is linked to a list of publications with relevant citations.

-----&gt; Cancers 
(Human Disease Author Aid Collection, Part 4) 
In the current part, selected Gynecological and Brain cancers were chosen based on their prevalence, and data availability. Part 3 includes 
A) Templates for:
Endometrial cancer
Ovarian Cancer
Сervical cancer
Gestational trophoblastic disease
Сhoriocarcinoma
B) Automatically collected information about 8 Brain Cancers.

----&gt; PLEASE download files to read them and open the links!
DOI: 10.5061/dryad.55m2m81
title: Data from: Myeloperoxidase oxidation of methionine associates with early cystic fibrosis lung disease
DOI: 10.6084/m9.figshare.13365233.v1
title: Supplementary Material for: Effect of Postoperative Radiotherapy in Thymoma Patients: A SEER-Based Study

description: <b><i>Introduction:</i></b> The role of postoperative radiation therapy (PORT) for thymoma is under debate, especially in patients aged ≥60 years with an advanced stage (Masaoka stages III and IV). We aimed to evaluate the efficacy of PORT for thymoma in a population-based registry. <b><i>Methods:</i></b> A retrospective analysis of the Surveillance, Epidemiology, and End Results (SEER) database was conducted to compare the outcomes of thymoma patients with or without PORT. The primary outcomes were overall survival (OS) and cancer-specific survival (CSS). Conditional inference tree analyses were performed for risk classification according to the study variables. Cox regression was performed to evaluate the prognostic effect of PORT in the specific subgroups. <b><i>Results:</i></b> A total of 2,236 patients were included. The conditional inference tree analysis identified that an age ≥60, a Masaoka stage ≥3, and the year of diagnosis were important factors when classifying patients into prognostic subgroups. PORT was found to be a protective predictor of OS in patients aged ≥60 years, those with a Masaoka stage III—IV, and those diagnosed after 2005. Further subgroup analyses revealed that PORT was significantly associated with a better OS (HR = 0.77) in patients aged ≥60 years, whereas it was not significantly associated with CSS. <b><i>Conclusions:</i></b> An older age (≥60 years) is critical for predicting survival outcomes in thymoma patients. Moreover, patients aged ≥60 years could benefit from PORT in terms of OS.
DOI: 10.17632/nz96v5spbf
title: Data for: Dataset of white spot disease affected shrimp farmers disaggregated by the variables of farm site, environment, disease history, operational practices, and saline zones

description: Contrivance of data-set Among the aquaculture species in Bangladesh, shrimp is the most vulnerable to disease, specifically to White Spot Disease (WSD) that causes complete loss of entire farm production. Al almost every year. Due to the outbreak of WSD caused by White Spot Syndrome Virus (WSSV), the Asian shrimp farming sector lost USD 20 billion in 2018, of which a lion share was from Bangladesh (Davies, 2019). In the condition of both vertical and horizontal transmission of WSSV, there is no effective treatment for vertical transmission whereas horizontal transmission can be mitigated by taking some management measures within the farming practices. An extensive review of literature, and field studies and observations were conducted to identify the variables linked to the risk factors of WSD, and accordingly, the google featured questionnaire was developed for the survey. The survey was conducted using android mobile phone with 233 shrimp farmers in Khulna, Bagerhat and Satkhira districts of Bangladesh. This dataset has been analyzed through multivariate statistical analysis to identify the risk factors of WSD and the results were published in a journal article. The results are likely to be useful for policymakers and development organizations to reduce the impacts of WSD on shrimp farming in Bangladesh. Potentials of the data-set This dataset has a large number of variables, some of which can be reclassified to develop nominal/categorical/dependent variables, and can be used for further statistical analysis. The dataset has also the GPS coordinates of all the 233 farms individually which can be used for spatial and longitudinal analysis in the future. The dataset reposited here in the Mendeley will be useful as the baseline data for analyzing the changes of shrimp farming in the coming years in Bangladesh.
DOI: 10.6084/m9.figshare.8956712.v1
title: Major bias and knowledge gaps on fragmentation research in a megadiverse country

description: Data from: Major bias and knowledge gaps on fragmentation research in a megadiverse country
DOI: 10.6084/m9.figshare.18046400.v1
title: Metabolomics Data.xlsx

description: Untargeted metabolomics on serum from healthy controls and COVID patients
DOI: 10.6084/m9.figshare.28603394.v1
title: Se_Poland_Montenegro

description: <b>Selenium content and bioaccumulation in </b><b><i>Bidens tripartita </i></b><b>and </b><b><i>Bidens frondosa </i></b><b>under different habitat conditions in Poland and Montenegro</b>
DOI: 10.6084/m9.figshare.8866133.v1
title: rugby.nc

description: The Six Nations Championship is a yearly rugby competition between Italy, Ireland,Scotland, England, France and Wales. Fifteen games are played each year, representingall combinations of the six teams.<br>This example uses and includes results from 2014 - 2017, comprising 60 totalgames. It models latent parameters for each team's attack and defense, as wellas a parameter for home team advantage.<br>See https://docs.pymc.io/notebooks/rugby_analytics.html by Peader Coylefor more details and references.
DOI: 10.17632/bx8982xgwt
title: rPPG-10

description: This dataset comprises facial video recordings and it was specifically created to support research in remote (non-contact) photoplethysmography (rPPG). It aims to facilitate the development and validation of non-contact heart rate estimation methods from facial videos. The dataset includes data from 26 healthy Portuguese university students (12 male and 14 female), with a mean age of 22.5 ± 1.2 years. Although a total of 27 subjects were originally recorded, one participant (Subject_4) was excluded from the final dataset due to significant artifacts in both video and ECG data.

For each subject, a video recording lasting 10 minutes (600 seconds) was captured, which was then divided into 3 regions of interest (ROI): the forehead, the right cheek (Cheek1), and the left cheek (Cheek2). These videos are provided in AVI format with a resolution of 64×64 pixels and follow a standardized naming convention: Subject_X_ROI.avi (e.g., Subject_1_Forehead.avi). Alongside the video data, a synchronized electrocardiogram (ECG) signal is available for each subject. These signals are stored in NumPy .npy format for easy access using the Numpy library or compatible tools. They also followed a standardized naming convention: Subject_X_ECG.npy (e.g., Subject_1_ECG.avi). Each subject's data is organized into a dedicated folder (e.g., Subject_1, Subject_2, etc.), which contains the three ROI-specific videos and the associated ECG file.

Additionally, an Excel spreadsheet (.xlsx) is included, containing metadata for each participant. This file documents demographic details (such as age, sex, height, weight, and Fitzpatrick skin type), environmental conditions during the recording (including temperature, humidity, and illumination), as other variables that could influence heart rate or signal quality. These include physical activity habits, recent intake of alcohol, smoking status, and the presence of facial obstructions (e.g., makeup or sunscreen).

This dataset was recorded under natural lighting conditions, introducing realistic variability that reflects challenging scenarios for rPPG. The presence of synchronized ECG provides a reliable ground truth, making this resource valuable for benchmarking and advancing heart rate estimation algorithms in non-controlled environments.
DOI: 10.6084/m9.figshare.23035472.v1
title: ACL_2023_Human_Study_Adversarial_Text.7z

description: This data is part of ACL 2023 publication "How do humans perceive adversarial text? A reality check on the validity and naturalness of word-based adversarial attacks". <br> <br> You will find: all_text_adversarial_sentences.csv file that includes 25 283 successful adversarial texts that we generated using 9 attacks from TextFooler library over three sentiment analysis datasets ( IMDB movie reviews, Rotten Tomatoes movie reviews, Yelp polarity service review) questionnaire_answers folder with the survey answers from the participants for each part of the questionnaire.
DOI: 10.6084/m9.figshare.23303819.v1
title: Genome drafts for E4

description: The genome drafts for E4 with or without NGS data polishing.
DOI: 10.6084/m9.figshare.26539759.v1
title: Source data for 'Interfering Josephson diode effect in Ta2Pd3Te5 asymmetric edge interferometer'

description: Source data for 'Interfering Josephson diode effect in Ta2Pd3Te5 asymmetric edge interferometer'authored by <b>Yupeng Li</b>, Dayu Yan, Yu Hong, Haohao Sheng, An-Qi Wang, Ziwei Dou, Xingchen Guo, Xiaofan Shi, ZiKang Su, Zhaozheng Lyu, Tian Qian, Guangtong Liu, Fanming Qu, Kun Jiang, Zhijun Wang, Youguo Shi, Zhu-An Xu, Jiangping Hu, Li Lu, and Jie Shen
DOI: 10.17632/tkb9dwf85t
title: MCEND: An open-source program for quantum electron-nuclear dynamics

description: The software MCEND (Multi-Configuration Electron-Nuclear Dynamics) is a free open-source program package which simulates the quantum dynamics of electron-nuclei simultaneously for diatomic molecules. Its formulation, implementation, and usage are described in detail. MCEND uses a grid-based basis representation for the nuclei, and the electronic basis is derived from standard electronic structure basis sets on the nuclear grid. The wave function is represented as a sum over products of electronic and nuclear wave functions, thus capturing correlation effects between electrons, nuclei, and electrons and nuclei. The LiH molecule was used as an example for simulating the molecular properties such as the dipole moment and absorption spectrum.
DOI: 10.6084/m9.figshare.28714805.v1
title: DataSet_HHG_STOV

description: <i>We provide the numerical results of the extreme-ultraviolet (EUV) generation of spatiotemporal optical vortices (STOV) through the high-order harmonic generation (HHG) process. We numerically explore the macroscopic generation of high-order harmonics arising from the non-linear interaction of an infrared (IR) STOV driver with a gaseous media, accounting for the propagation dynamics of the harmonic STOVs to the far-field and their refocusing properties. We analyze (i) the HHG driven by a perfectly homogeneous STOV, (ii) the effect of the driving field inhomogeneities into the harmonics and (iii) the out-of-focus generation, where the target is not placed at STOV focus. In the last case, compared against the experimental results obtained in similar situations. The methodology, analysis and interpretation of the data hereby provided is available in [1] R. Martin-Hernandez et al. “Extreme-ultraviolet spatiotemporal vortices via high harmonic generation” Nature Photonics </i><i>10.1038/s41566-025-01699-w</i><i>.</i><i>This dataset contains:</i>- <i>Simulated macroscopic HHG spectra spatially resolved driven by IR STOVs in the following situations: perfectly homogeneous driving field with the gas-jet at STOV focus, inhomogeneous STOV driving field with the targe at the focus and inhomogeneous STOV driver with the gas-jet placed before, at and after the driving field focus.</i>- <i>The spatiotemporal distribution of the 13</i><sup><em>th</em></sup><i> , 17</i><sup><em>th </em></sup><i>and 21</i><sup><em>st</em></sup><i> harmonic orders in the far-field.</i>- <i>The spatiotemporal distribution of the 13</i><sup><em>th</em></sup><i> , 17</i><sup><em>th </em></sup><i>and 21</i><sup><em>st</em></sup><i> harmonic orders after refocusing.</i><i>A minimal python example to process the dataset and generate the figures in [1]</i>
DOI: 10.60893/figshare.jcp.28300139.v1
title: Economic Analysis

description: A comprehensive comparison of the economic feasibility of the Gemini/NaOL combined collector versus conventional flotation separation (utilizing HF) for the selective separation of quartz and feldspar is provided in the supplementary material.
DOI: 10.17632/9t7nx5k7xb
title: The Causes of Poverty and the Scale of Poverty

description: This topic has always been relevant because poverty is one of the main factors influencing the development of third-world countries. Poverty has a character that includes several aspects: social, economic, and political; for which poverty is not only a lack of what is financial income but can also be poverty in the denial of society's general rights; food security, and the various resources that governments can provide for their residents.
DOI: 10.6084/m9.figshare.20102945.v2
title: Benchmark dataset of US-align2

description: USalign.zip - US-align version 20220606 used for the alignment benchmark. <br> RIPC.zip - 20 reference alignments from the RIPC dataset and corresponding protein PDB files. <br> fold.zip - 954 SCOPe protein domain structures and their corresponding SCOPe 2.08 fold. <br> Rfam.zip - PDB files for 508 RNA chains and their Rfam 14.8 famillies.
DOI: 10.17632/9whs76ppz3
title: Thermal signatures for calving prediction in Deoni cattle

description: The data pertaining to the manuscript entitled "Thermal signatures of calving process as a novel non-invasive technology 
to predict parturition time window in Zebu (Bos indicus) cattle"
DOI: 10.17632/crwd49pz7g
title: Treatment of Anogenital Warts in HIV-positive Patients: A Systematic Review

description: Supplementary files include:
Supplementary Table I (Level of Evidence and Grade of Recommendation Scale) 
Supplementary Table II (Topical Treatment: Summary of clinical studies)
Supplementary Table III (Topical Treatment: Summary of case reports)
Supplementary Table IV (Surgical, Systemic, and Combined Treatment: Summary of clinical studies)
Supplementary Table V (Surgical and Systemic Treatment: Summary of case reports)
Supplementary References
DOI: 10.17632/jzdj6h7gms
title: Creating a white blood cell dataset for segmentation

description: The KRD-WBC dataset consists of 600 images, each sized at 512x512 pixels, accompanied by corresponding ground truth images of the same dimensions. The dataset was gathered from Nanakali and Bio lab in Erbil city, located in the Kurdistan region of Iraq. It includes images of White Blood Cells (WBCs) categorized into five distinct subtypes: Neutrophils, Lymphocytes, Monocytes, Eosinophils, and Basophils. This dataset is valuable for medical and biological research, enabling the study and analysis of different WBC subtypes.
DOI: 10.17632/zh58byr53c
title: Full factorial design of experiments dataset for parallel-connected lithium-ion cells imbalanced performance investigation

description: This work includes an experimental dataset of lithium-ion battery parallel-connected modules. The campaign, conducted at the Stanford Energy Control Laboratory, employs a comprehensive full factorial Design of Experiment methodology on ladder-configured parallel strings. A total of 54 test conditions were investigated under various operating temperatures, cell-to-cell interconnection resistance, cell chemistry, and aging levels. The module-level testing procedure involved fixed Constant Current Constant Voltage (CC-CV) charging and Constant Current (CC) discharge. Beyond monitoring total module current and voltage, Hall sensors and thermocouples were employed to measure the signals from each individual cell to quantify both current and temperature distribution within each tested module configuration. Additionally, the dataset contains cell characterization data for every cell (i.e. NCA Samsung INR21700-50E and NMC LG-Chem INR21700-M50T) used in the module-level experiments. This dataset provides valuable resources for developing battery physics-based, empirical, and data-driven models at single cell and module level, ultimately contributing to a deeper understanding of how cell-to-cell variations propagate from the individual cell level to define the performance of the complete system.
DOI: 10.6084/m9.figshare.12611831.v3
title: QoR-15 scores

description: Effects of regional blocks on QoR<br><br>
DOI: 10.6084/m9.figshare.1558175.v1
title: Surfacing Peer Review

description: Presentation to kick off Peer Review week, at Digital Science Symposium, held at Victoria University in Wellington, NZ, on 28 Sept 2015.
DOI: 10.6084/m9.figshare.24803277.v1
title: Ficha de controle hídrico e hemodinâmico para o paciente em UTI

description: Trata-se de uma tecnologia assistencial criada a partir da pesquisa intitulada "Ficha de controle hídrico e hemodinâmico para pacientes críticos: desenvolvimento e avaliação do público alvo". A pesquisa foi apreciada e aprovada pelo comitê de ética sob nº de parecer 6127275 e CAEE: 68677323.7.0000.5550.
DOI: 10.6084/m9.figshare.27887304.v1
title: download sequence informations

description: We downloaded 54 isolates sequences to blast with 43 CL-R isolates
DOI: 10.17632/4b8v2dvh94
title: Local steroid treatment and surgery

description: We share the raw data of our study named as "Local Steroid Treatment: An Effective Procedure for Idiopathic Granulomatous Mastitis, Including Complicated Cases". Our study aimed to evaluate the effectiveness of local steroid treatment (LST) for idiopathic granulomatous mastitis (IGM) and to compare with surgical methods. The most likely hypothesis is that IGM is an autoinflammatory disease. Based on this hypothesis and the results of our study, suppressing inflammation in patients with IGM rather than resection was found to be more effective and acceptable. Data of the study was retrospectively collected from hospital electronic records and patient follow-up forms. Clinical characteristics of patients, pain scores during treatment proscesses, changes in lesion sizes, costs of the treatments and results of LST are included in file in excel formats.
DOI: 10.6084/m9.figshare.11954481.v1
title: DATASET for single_phase flow

description: <i>Figure 1</i>: Theoretical critical radius <i>R<sub>c</sub></i> versus<i> </i>(<i>z</i> - <i>z<sub>c</sub></i>) for different values of σ/&lt;<i>r</i>&gt; as indicated in the inset. <i></i><i>Figure 2</i> Ensemble average of the critical flow rate <i>Q<sub>c</sub></i> versus<i> </i>(<i>z</i> - <i>z<sub>c</sub></i>) for different values of σ/&lt;<i>r</i>&gt; as indicated in the inset. The error bars represent the uncertainty of the ensemble averages. <i>Figure 3</i> Ensemble average of the size of {<i>Q<sub>c</sub></i>} versus<i> </i>(<i>z</i> - <i>z<sub>c</sub></i>) for different values of σ/&lt;<i>r</i>&gt; as indicated in the inset. <br><i>Figure 4</i> Ensemble average of the number of connected pipes in {<i>Q<sub>c</sub></i>}, <i>S<sub>Qc</sub></i><sup>°</sup>, versus<i> </i>(<i>z</i> - <i>z<sub>c</sub></i>) for different values of σ/&lt;<i>r</i>&gt; as indicated in the inset. <br><i>Figure </i>5 Ensemble average of the partition index <i>I<sub>Pr</sub></i> versus<i> </i>(<i>z</i> - <i>z<sub>c</sub></i>) for different values of σ/&lt;<i>r</i>&gt; as indicated in the inset<br><i>Figure 6</i> Ensemble averaged values of a) <i>S<sub>QR</sub></i> and b) <i>S<sub>QR</sub></i><sup>°</sup>. <br><br>
DOI: 10.6084/m9.figshare.27695190.v1
title: 2.Eggnog6_orthology

description: These datasets are the result of the identification of orthologous genes between <i>Tribolium</i> and <i>Drosophila</i>.