cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/krqmp-5hy81
title: Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression

description: Single-cell RNA sequencing count matrices and other data generated in the manuscript "Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression". The code used to generate these files can be found here: https://github.com/pachterlab/LSCHWCP_2023
If you use this data, please cite the manuscript: 
Laura Luebbert, Delaney K Sullivan, Maria Carilli, Kristjan Eldjarn Hjorleifsson, Alexander Viloria Winnett, Tara Chari, Lior Pachter (2023). Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression. bioRxiv 2023.12.11.571168; doi: https://doi.org/10.1101/2023.12.11.571168
View the manuscript here: https://www.biorxiv.org/content/10.1101/2023.12.11.571168
DOI: 10.15468/dl.r7e5tu
title: Occurrence Download

description: A dataset containing 13796 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phebalium Vent."
 ]
}

 The dataset includes 13796 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217188-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7utqb
title: Occurrence Download

description: A dataset containing 996 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pennisetum orientale Rich."
 ]
}

 The dataset includes 996 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037352-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bebzg
title: Occurrence Download

description: A dataset containing 23385 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Meliosma Blume"
 ]
}

 The dataset includes 23385 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217203-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7vm9s9s496.1
title: LINF_250022000

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/nn8hz7fztb.1
title: LINF_360042700

description: short chain dehydrogenase-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.arb9an
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinogobius kurodai (Tanaka, 1908)"
 ]
}

 The dataset includes 719 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000106-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xf6rggrsn6.2
title: Eimeria tenella whole genome NGS, unsporulated oocysts and oocysts at 0 and 8 hours of sporulation

description: Unsporulated Eimeria tenella oocysts (0 hours of sporulation elapsed): 22-024020-0001_S1_L001_R_001.fasta
Eimeria tenella oocysts at 8 hours of sporulation elapsed: 22-024020-0002_S2_L001_R_001.fasta

Six additional timepoints were sequenced, see:
DOI: 10.17632/547wwd5jfr.1 (Eimeria tenella whole genome NGS, oocysts at 16 hours of sporulation and 24 hours of sporulation)
DOI: 10.17632/962ypgjnmj.1 (Eimeria tenella whole genome NGS, oocysts at 32 hours of sporulation and 64 hours of sporulation)
DOI: 10.17632/frxnm8vyys.1 (Eimeria tenella whole genome NGS, oocysts at 381 hours of sporulation and 835 hours of sporulation)

Relative abundance of each organellar genome was estimated based on the proportion of reads at each time point that mapped to the mitochondrial, apicoplast, and nuclear genomes, see: 
Kruth, P.S. (2024). Molecular Investigation of Exogenous Stages of Eimeria tenella: Expression of Fragmented Mitochondrial rDNA, Organellar Genome Dynamics, and Development of a Transcriptional Activity-Based Assay for Measuring Oocyst Viability. [Doctoral dissertation, University of Guelph, Ontario Veterinary College, Department of Pathobiology]. UofG Atrium, https://hdl.handle.net/10214/28208.
DOI: 10.15493/sapri.08352023
title: Repeat ground photography data collected on Marion Island between 1965 and 2020

description: This is the repeat ground photography raw data that was used to assess vegetation change on Marion Island between 1965 and 2020. Historical photographs were sourced from Brian Huntley's 1965 fieldwork on the island and Marthan Bester's 1980 fieldwork without gps coordinates. These slides were digitised. The locations of the original photographs were located by Alex Terauds, Steven Chown and Nita Pallet in the field and repeated by Nita Pallet in the 2019/2020 season for the current study. We quantified vegetation change by visually estimating the cover of all plant guilds in each habitat in each photograph, resulting in a paired cover estimate for each plant guild similar to growth form. This was accompanied by an analysis of climate trends and invasive plant species cover changes over the same period. For more detail, consult the accompanying paper in Journal of Vegetation Science or contact the lead author.
DOI: 10.15468/dl.umm5dc
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchoconger trewavasae Ben-Tuvia, 1993"
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000107-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gcm79tzykj.1
title: LINF_250023900

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.25420/britishmuseum.28173851
title: _Interview Kikonyane brothers

description: Transcription and translation of the interview with the Kikonyane brothers
DOI: 10.25420/britishmuseum.28173851.v1
title: _Interview Kikonyane brothers

description: Transcription and translation of the interview with the Kikonyane brothers
DOI: 10.25420/britishmuseum.28173827
title: _Process diagram for production of other products

description: Process diagram showing the stages in the production of other items at Ncaang
DOI: 10.25420/britishmuseum.28173824
title: _Process diagram for production of skins

description: Process diagram showing the stages in the production of leather items at Ncaang
DOI: 10.17632/cc3z7bdtmh.1
title: LINF_360044200

description: phytoene synthase
Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.14678551
title: Orchestrating Multi-Agent Systems for Multi-Source Information Retrieval and Question Answering with Large Language Models

description: Orchestrating Multi-Agent Systems forMulti-Source Information Retrieval and QuestionAnswering with Large Language ModelsAntony Seabra1,2, Claudio Cavalcante1,2, Joao Nepomuceno1, Lucas Lago1, NicolaasRuberg1, and Sergio Lifschitz21 BNDES - ´Area de Tecnologia da Informa¸c˜ao, Rio de Janeiro, Brazil2 PUC-Rio - Departamento de Inform´atica, Rio de Janeiro, BrazilAbstract.

 We present a novel framework for developing robust multi-source questionanswersystems by dynamically integrating Large Language Models with diverse data sources.This framework leverages a multi-agent architecture to coordinate the retrieval and synthesisof information from unstructured documents, like PDFs, and structured databases. Specializedagents, including SQL agents, Retrieval-Augmented Generation agents, and routeragents, dynamically select and execute the most suitable retrieval strategies for each query.To enhance contextual relevance and accuracy, the framework employs adaptive prompt engineering,fine-tuned to the specific requirements of each interaction. We demonstrate theeffectiveness of this approach in the domain of Contract Management, where answering complexqueries often demands seamless collaboration between structured and unstructured data.The results highlight the framework’s capability to deliver precise, context-aware responses,establishing a scalable solution for multi-domain question-answer applications.

Keywords: Information Retrieval, Question Answer, Large Language Models, Documents,Databases, Prompt Engineering, Retrieval Augmented Generation, Text-to-SQL.
DOI: 10.5281/zenodo.14678552
title: Orchestrating Multi-Agent Systems for Multi-Source Information Retrieval and Question Answering with Large Language Models

description: Orchestrating Multi-Agent Systems forMulti-Source Information Retrieval and QuestionAnswering with Large Language ModelsAntony Seabra1,2, Claudio Cavalcante1,2, Joao Nepomuceno1, Lucas Lago1, NicolaasRuberg1, and Sergio Lifschitz21 BNDES - ´Area de Tecnologia da Informa¸c˜ao, Rio de Janeiro, Brazil2 PUC-Rio - Departamento de Inform´atica, Rio de Janeiro, BrazilAbstract.

 We present a novel framework for developing robust multi-source questionanswersystems by dynamically integrating Large Language Models with diverse data sources.This framework leverages a multi-agent architecture to coordinate the retrieval and synthesisof information from unstructured documents, like PDFs, and structured databases. Specializedagents, including SQL agents, Retrieval-Augmented Generation agents, and routeragents, dynamically select and execute the most suitable retrieval strategies for each query.To enhance contextual relevance and accuracy, the framework employs adaptive prompt engineering,fine-tuned to the specific requirements of each interaction. We demonstrate theeffectiveness of this approach in the domain of Contract Management, where answering complexqueries often demands seamless collaboration between structured and unstructured data.The results highlight the framework’s capability to deliver precise, context-aware responses,establishing a scalable solution for multi-domain question-answer applications.

Keywords: Information Retrieval, Question Answer, Large Language Models, Documents,Databases, Prompt Engineering, Retrieval Augmented Generation, Text-to-SQL.
DOI: 10.17632/vbvsnsx78m.1
title: LDHU3_09.0570

description: kinetoplastid kinetochore protein 10 | KKT10 | CLK1
Leishmania donovani (HU3 strain)
DOI: 10.17632/vbvsnsx78m.2
title: LDHU3_09.0570

description: kinetoplastid kinetochore protein 10 | KKT10 | CLK1
Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.eb2n33
title: Occurrence Download

description: A dataset containing 10122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Living Specimen, Occurrence evidence)",
 "TaxonKey is Ixodes ricinus Linnaeus, 1758"
 ]
}

 The dataset includes 10122 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000109-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syfmt5
title: Occurrence Download

description: A dataset listing the 10 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-49.57223 -25.45929,-49.57887 -25.45952,-49.57862 -25.46898,-49.57146 -25.46898,-49.57223 -25.45929))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 10 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000102-250117103327516/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7cnxwtccsp.1
title: Pregnant women's thermal sensation and clothing behavior differences in the three trimesters: On-site study at a hospital in Xi'an, China

description: The data were used to analyze inter-individual differences in pregnant women’s thermal sensations and clothing insulation values in the hospital. This dataset included their basic information, indoor and outdoor environment parameters of the survey site and pregnant women's thermal sensation votes (TSVs) and thermal comfort votes (TCVs). 1055 pregnant women participated in the present survey, including 593 from the B-ultrasound room and 463 from the waiting area.
DOI: 10.17632/7cnxwtccsp.2
title: Thermal perception and dressing behaviors of pregnant women during different stages of pregnancy: A field study at a hospital in Xi’an, China

description: The data were used to analyze inter-individual differences in pregnant women’s thermal sensations and clothing insulation values in the hospital. This dataset included their basic information, indoor and outdoor environment parameters of the survey site and pregnant women's thermal sensation votes (TSVs) and thermal comfort votes (TCVs). 1055 pregnant women participated in the present survey, including 593 from the B-ultrasound room and 463 from the waiting area.
DOI: 10.17632/n8cs4ns97p.1
title: Vineyard dataset for pruning

description: This dataset contains vineyard images collected from 2021 to 2022. Labels were created for each image to indicate vine trunk, unpruned shoots, and pruned shoots. Thus, offering a comprehensive overview of the components of the vine.
• The data collected include photos of vineyards at different periods to provide an overview that includes the main vegetative states of the vine. 
• The data can be used by researchers for computer vision projects, to build automatic pruning systems or other projects related to maintaining life. To date, no similar datasets are available, so this provides an important starting point in this area.
DOI: 10.17632/8523ysrk98.1
title: LINF_360044300

description: signal recognition particle receptor like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/yfbkjxgt2f.1
title: EFFICACY AND SAFETY OF ACUPUNCTURE FOR VERTEBRAL COMPRESSION FRACTURES:A SYSTEMATIC REVIEW AND META-ANALYSIS OF RANDOMIZED CONTROLLED TRIALS

description: Background :The purpose of this study was to systematically evaluate the clinical efficacy and safety of acupuncture in the treatment of vertebral compression fractures by meta-analysis
Methods Through searching PubMed, cochrane library, CNKI, Wanfang and VIP database from the establishment of the database to August 18, 2022, articles on clinical randomized controlled trials related to acupuncture for vertebral compression fracture were recorded in NoteExpress for combined screening. Cochrane risk assessment criteria were used to evaluate the quality of the literature. Two reviewers independently assessed the literature for control. Literatures meeting the criteria were selected for meta-analysis using RevMan and Stata. 
Results Twenty-eight studies with a total of 2789 patients were eventually included. The analysis results showed that compared with the control group, the experimental group significantly reduced the Visual Analogue Scale (VAS) one month after surgery (MD = −1.57, 95% CI: [−1.88, −1.27], P &lt; 0.05) and the incidence of adverse reactions (RR=0.27, 95%CI: [0.20, 0.38], P &lt; 0.05), improved the effective rate (RR= 1.25, 95%Cl:[1.21, 1.29], P= &lt; 0.05), spinal dysfunction score (ODI) (MD = −3.09, 95%CI: [−5.53, −0.65], P &lt; 0.05), bone mineral density (MD = 0.04, 95%CI: [0.01, 0.06], P &lt; 0.05).
 Conclusion Compared with the control group, acupuncture can effectively relieve pain, increase bone density, and reduce ODI score with a low incidence of adverse reactions, which has a significant therapeutic effect on vertebral compression fractures
DOI: 10.17632/87bw6ypzvx.1
title: Data for: A Dynamic Meshing Scheme for Integrated Hydrologic Modelling to Represent Evolving Landscapes

description: A. HydroGeoSphere (HGS) Simulation Process
This study involves two primary steps for solving the research problems. First, a data file is prepared for the pre-processor (known as "grok"), which is subsequently executed to generate input data files for PHGS. In the second step, PHGS is initiated to solve the problem and generates output data files.

B. Dataset Description
The repository encompasses two primary dataset categories:
1. Field Application Data: This dataset contains the information used in the main paper.
2. Dynamic Meshing Scheme Verification Data: All data used for figures in the main paper is stored in this repository. The file names correspond to the figure names in the main paper. The grok files (*.grok) included in the dataset are pre-processors essential for running the simulations. To execute the simulations and visualize their outcomes, three executables (GROK.EXE, PHGS.EXE, and HSPLOT.EXE) are required. For additional information, please contact the first author, Hyoun-Tae Hwang.

C. HGS Version Requirements for Simulations with Dynamic Meshing Schemes
To perform simulations involving dynamic meshing schemes, the following HGS version requirements must be met:
1. General Fixed Mesh Simulations: HGS version 2022 or higher is required.
2. Dynamic Meshing Problems: A special version of HGS for dynamic meshing is needed to simulate the dynamic meshing scenarios used in this study.

D. License Notice
Please be aware that permission is required for redistributing the data, and it should not be used for commercial purposes.
DOI: 10.17632/jbvms9b8bx.1
title: LDHU3_16.1480

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/w8v54r24t8.1
title: Organosulfates in Shanghai_SJTU_YZ

description: The datasets include the molecular compositions, concentrations, tandem MS measurements, and source apportionment results of organosulfates detected in atmospheric aerosols across different seasons in 2015-2016 and 2018-2019 in Shanghai, China.
DOI: 10.5517/ccdc.csd.cc2kfnc1
title: CCDC 2366613: Experimental Crystal Structure Determination

description: Related Article: Jungmin Kang, Jihye Park, Pargat Singh, Taejoo Jeong, In Su Kim|2024|J.Org.Chem.|89|18188|doi:10.1021/acs.joc.4c02033
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kfnf3
title: CCDC 2366615: Experimental Crystal Structure Determination

description: Related Article: Jungmin Kang, Jihye Park, Pargat Singh, Taejoo Jeong, In Su Kim|2024|J.Org.Chem.|89|18188|doi:10.1021/acs.joc.4c02033
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kkhf2
title: CCDC 2370304: Experimental Crystal Structure Determination

description: Related Article: Liubov O. Tcelykh, Alexander S. Goloveshkin, Liubov S. Rodina, Boris A. Kolozhvari, Egor V. Latipov, Sergey E. Kushnir, Valentina V. Utochnikova|2024|Inorg.Chem.|63|24096|doi:10.1021/acs.inorgchem.4c03253
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ktvv3
title: CCDC 2378346: Experimental Crystal Structure Determination

description: Related Article: Yuhui Chen, Takeshi Sano, Hisahiro Sasabe, Ryo Sugiyama, Amane Matsunaga, Hiroki Sato, Hiroshi Katagiri, Junji Kido|2024|J.Mater.Chem.C|12|19274|doi:10.1039/D4TC03534H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kv9c3
title: CCDC 2378765: Experimental Crystal Structure Determination

description: Related Article: Alexandros Terzopoulos, Rafaela Marinho Fonseca, Andrew D. Bond, Clare P. Grey, Dominic S. Wright|2025|Polyhedron|267|117322|doi:10.1016/j.poly.2024.117322
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvn47
title: CCDC 2379099: Experimental Crystal Structure Determination

description: Related Article: Xue-Wen Wu, Yong-Xiang Huang, Chao-Jun Li, Yan-Fang Li, Bin-Bao Wang, Muhammad Aurang Zeb, Wei-Lie Xiao, Chang-Bo Zheng, Xiao-Li Li|2025|Bioorg.Chem.|154|108026|doi:10.1016/j.bioorg.2024.108026
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvn58
title: CCDC 2379100: Experimental Crystal Structure Determination

description: Related Article: Xue-Wen Wu, Yong-Xiang Huang, Chao-Jun Li, Yan-Fang Li, Bin-Bao Wang, Muhammad Aurang Zeb, Wei-Lie Xiao, Chang-Bo Zheng, Xiao-Li Li|2025|Bioorg.Chem.|154|108026|doi:10.1016/j.bioorg.2024.108026
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvn69
title: CCDC 2379101: Experimental Crystal Structure Determination

description: Related Article: Xue-Wen Wu, Yong-Xiang Huang, Chao-Jun Li, Yan-Fang Li, Bin-Bao Wang, Muhammad Aurang Zeb, Wei-Lie Xiao, Chang-Bo Zheng, Xiao-Li Li|2025|Bioorg.Chem.|154|108026|doi:10.1016/j.bioorg.2024.108026
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kytjw
title: CCDC 2382149: Experimental Crystal Structure Determination

description: Related Article: Rodrigo Chico-Merino, Hugo Pilotzi, Vladimir Carranza, María L. Orea, Alan Carrasco-Carballo, Sylvain Bernès, David M. Aparicio, Joel L. Terán|2025|Tetrahedron|171|134401|doi:10.1016/j.tet.2024.134401
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.