cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/fe176584-e015-4019-8e5d-a2c0f998932f
title: Data underlying the PhD thesis: Quantum Acoustics with high-overtone bulk resonators and superconducting qubits

description: We measured a transmon qubit coupled to an High-overtone Bulk Acoustic Resonator (HBAR) which was fabricated in the cleanroom of Kavli Nanolab Delft.<br>The fabricated chip was cooled down to ~20 mK in a commercially bought cryofree dilution refrigerator (Oxford Instruments Triton 200). All measurements (single and two tone spectroscopy) were performed on a Vector Network Analyzer (VNA, Keysight PNA N5222A, 10MHz-26.5 GHz) which was connected to the sample using microwave RF cables. Using additional signal generators (Rohde & Schwarz, SMB 100A, 100 kHz - 12.75 GHz) we were able to produce more needed continuous wave tone to AC-Stark shift the qubit. A pulse generator (Rigol DG1022) in combination with a microwave switch (Taylor MW switch SBS-A01TS), both connected to the VNA were used to performed gated two tone spectroscopy for time domain measurement.
DOI: 10.4121/fe176584-e015-4019-8e5d-a2c0f998932f.v2
title: Data underlying the PhD thesis: Quantum Acoustics with high-overtone bulk resonators and superconducting qubits

description: We measured a transmon qubit coupled to an High-overtone Bulk Acoustic Resonator (HBAR) which was fabricated in the cleanroom of Kavli Nanolab Delft.<br>The fabricated chip was cooled down to ~20 mK in a commercially bought cryofree dilution refrigerator (Oxford Instruments Triton 200). All measurements (single and two tone spectroscopy) were performed on a Vector Network Analyzer (VNA, Keysight PNA N5222A, 10MHz-26.5 GHz) which was connected to the sample using microwave RF cables. Using additional signal generators (Rohde & Schwarz, SMB 100A, 100 kHz - 12.75 GHz) we were able to produce more needed continuous wave tone to AC-Stark shift the qubit. A pulse generator (Rigol DG1022) in combination with a microwave switch (Taylor MW switch SBS-A01TS), both connected to the VNA were used to performed gated two tone spectroscopy for time domain measurement.
DOI: 10.5281/zenodo.10533628
title: Material data of the pipe grade HDPE-HE3493LS-H

description: Excel spreadsheets containing information on physical properties of the polymer grade HDPE-HE3493LS-H at process-relevant conditions.

These include:



measured shear viscosity as function of shear rate and temperature (numeric values)

measured specific volume as function of temperature and pressure (numeric values)

measured specific heat capacity as function of temperature (numeric values)

rheological and thermodynamic models used in the network-theory-based calculations (equations and coefficients)
DOI: 10.6084/m9.figshare.20502050
title: The effect of nigella supplementation on blood pressure: A systematic review and dose-response meta-analysis

description: This study was performed to assess the effect of nigella supplementation on blood pressure levels among the adult population. A comprehensive search was carried out through PubMed, Scopus, Web of Science, and Cochrane Library by using relevant keywords to find out the randomized clinical trials evaluating the effect of nigella administration on systolic blood pressure (SBP) and diastolic blood pressure (DBP). A random-effect model was applied to achieve the overall effect size. Subgroup analysis and meta-regression were used to explore the source of heterogeneity and the effects of the possible moderators. Of the twenty-two trials that were eligible for the present study, seventeen studies consisting of 1048 participants were included in the meta-analysis. The results indicated that nigella administration could significantly reduce both SBP (−4.58 mmHg; 95%CI: −6.22, −2.94) and DBP (−3.08 mmHg; 95%CI: −4.62, −1.55). Subgroup analysis did not show any superiority between subgroups of variables. Dose-response analysis detected a nonlinear association between dose and duration of administration and change in blood pressure outcomes, highlighting that maximum SBP and DBP reduction was experienced at 2000 mg/day and 8 weeks of nigella administration, respectively. The present study suggests that nigella supplementation can be beneficial for managing blood pressure.
DOI: 10.6084/m9.figshare.24786729.v1
title: The association between ACE inhibitors and psoriasis based on the drug-targeted Mendelian randomization and real-world pharmacovigilance analyses

description: Although a growing number of observational studies suggest that angiotensin-converting enzyme inhibitors (ACEIs) intake may be a risk factor for psoriasis, evidence is still insufficient to draw definitive conclusions. Drug-targeted Mendelian randomization (DTMR) was used to analyze the causality between genetic proxied ACEIs and psoriasis. Furthermore, we performed a disproportionality analysis based on the FDA adverse event reporting system (FAERS) database to identify more suspicious subclasses of ACEIs. Using two kinds of genetic proxy instruments, the present DTMR research identified genetic proxied ACEIs as risk factors for psoriasis. Furthermore, our disproportionality analysis revealed that ramipril, trandolapril, perindopril, lisinopril, and enalapril were associated with the risk of psoriasis, which validates and refines the findings of the DTMR. Our integrative study verified that ACEIs, especially ramipril, trandolapril, perindopril, lisinopril, and enalapril, tended to increase the risk of psoriasis statistically.
DOI: 10.18112/openneuro.ds004943.v1.0.0
title: Characterisation of laminar and vascular spatiotemporal dynamics of CBV and BOLD signals using VASO and ME-GRE at 7T in humans
DOI: 10.34740/kaggle/dsv/7478877
title: Global CO₂ Emissions
DOI: 10.5281/zenodo.10551960
title: Material data for the film grade PP-RD204CF

description: Excel spreadsheets containing information on physical properties of the polymer grade PP-RD204CF at process-relevant conditions.

These include:



measured shear viscosity as function of shear rate and temperature (numeric values)

measured specific volume as function of temperature and pressure (numeric values)

measured specific heat capacity as function of temperature (numeric values)

rheological and thermodynamic models used in the network-theory-based calculations (equations and coefficients)
DOI: 10.5281/zenodo.10556900
title: Simulation data for leakage flow in screw extruders

description: Excel spreadsheet containing numerical simulation results for the dimensionless flow rate and dissipation rate in the flight clearance of screw extruders.
DOI: 10.5281/zenodo.10556901
title: Simulation data for leakage flow in screw extruders

description: Excel spreadsheet containing numerical simulation results for the dimensionless flow rate and dissipation rate in the flight clearance of screw extruders.
DOI: 10.5281/zenodo.10561220
title: Simulated flight correction factors for straight channels

description: Excel spreadsheets containing numerical simulation data for the flight correction factors used in the extended melt conveying models.These correction factors quantify the influence of the side walls on the one-dimensional drag and pressure flow through straight rectangular channels.
DOI: 10.5281/zenodo.10561221
title: Simulated flight correction factors for straight channels

description: Excel spreadsheets containing numerical simulation data for the flight correction factors used in the extended melt conveying models.These correction factors quantify the influence of the side walls on the one-dimensional drag and pressure flow through straight rectangular channels.
DOI: 10.5281/zenodo.10552178
title: Extended flow simulation data for three-dimensional rectangular channels

description: Excel file containing numerical simulation results for the dimensionless flow rate and dissipation rate in confined straight channels with an extended parametric range.
DOI: 10.5281/zenodo.10552179
title: Extended flow simulation data for three-dimensional rectangular channels

description: Excel file containing numerical simulation results for the dimensionless flow rate and dissipation rate in confined straight channels with an extended parametric range.
DOI: 10.18112/openneuro.ds004943.v1.0.1
title: Characterisation of laminar and vascular spatiotemporal dynamics of CBV and BOLD signals using VASO and ME-GRE at 7T in humans
DOI: 10.5281/zenodo.10552017
title: Simulation results for two-dimensional (undercut) curved channels

description: Excel file containing numerical simulation results for the dimensionless flow rate and dissipation rate in undercut curved screw channels (without flight effects).
DOI: 10.5281/zenodo.10552018
title: Simulation results for two-dimensional (undercut) curved channels

description: Excel file containing numerical simulation results for the dimensionless flow rate and dissipation rate in undercut curved screw channels (without flight effects).
DOI: 10.6084/m9.figshare.23649780
title: CITE-seq data from <b><i>Staphylococcus aureus</i></b><b> induce drug resistance in cancer T cells in Sézary Syndrome</b>

description: CITE-seq dataset of cells from a Sézary Syndrome patient cultured in the presence or absence of Romidepsin and/or S. aureus enterotoxins (SE) used in article:Chella Krishna Vadivel, Andreas Willerslev-Olsen, Martin Rich Javadi Namini, Ziao Zeng, Lang Yan, Maria Danielsen, Maria Gluud, Emil Marek Heymans Pallesen, Karolina Wojewoda, Amra Osmancevic, Signe Hedebo, Yun-Tsan Chang, Lise M. Lindahl, Sergei B. Koralov, Larisa J Geskin, Susan E Bates, Lars Iversen, Thomas Litman, Rikke Bech, Marion Wobser, Emmanuella Guenova, Maria R. Kamstrup, Niels Odum*, Terkild B. Buus*; <b>Staphylococcus aureus induce drug resistance in cancer T cells in Sézary Syndrome</b>. <i>Blood 2024; blood.2023021671.</i> DOI: https://doi.org/10.1182/blood.2023021671SS17.rds is contains R Data Serialization (RDS) file of a SingleCellExperiment (SCE) R object containing integrated single-cell CITE-seq data from four samples (PBS, Romidepsin, SE and Romidepsin+SE treatment) after 36 hours of in vitro culture.The <i>column data </i>(colData) of the SCE object contains the following information from each cell:treatment - whether cell was cultured in the presence (Romidepsin) or absence (DMSO) of Romidepsinstimulation - whether cell was cultured in the presence (SE) or absence (PBS) of S. aureus enterotoxins (SE)group - cell sample condition origin (a combination of stimulation and treatment columns)lane - whether cell was included in lane1 or lane2 of the two 10X Chromium lanes run in parallel from the same cell suspension poolsum - number of Unique Molecular Identifiers (UMIs) assigned to the celldetected - number of genes detected in the cellsubsets_Mito_percent - proportion of UMIs stemming from mitochondrial genessizeFactor - calculated sizeFactor for normalizationTRA_top5 - assignment of TCRalpha chain clonotype to one of the top5 clonotypes detected based on CDR3 amino acid sequenceTRB_top5 - assignment of TCRbeta chain clonotype to one of the top5 clonotypes detected based on CDR3 amino acid sequencecc_phase - inferred cell cycle phasecc_score_s - inferred cell cycle S-phase scorecc_score_G2M - inferred cell cycle G2M-phase scoreleiden_totalVI - leiden clustering assignment from lantent space of totalVI runcell_type - Cell type assignment of the cellSCE object contains three <i>alternative experiment </i>objects:ADT - Antibody derived tag (ADT) UMI counts from surface protein modalityVI_ADT - Antibody derived tag (ADT) UMI counts from surface protein modality denoised and normalized by totalVITF - Transcription factor activation scores (from DoRothEA) for each cell calculated using decoupleRSCE object contains three <i>dimension reductions</i>:PCA - principal component analysis calculated based on highly variable genestotalVI - latent space loadings from totalVI analysisumap - Uniform Manifold Approximation and Projection calculated based on latent space from totalVICode used in the analysis of this data is available on GitHub
DOI: 10.6084/m9.figshare.23649780.v1
title: CITE-seq data from <b><i>Staphylococcus aureus</i></b><b> induce drug resistance in cancer T cells in Sézary Syndrome</b>

description: CITE-seq dataset of cells from a Sézary Syndrome patient cultured in the presence or absence of Romidepsin and/or S. aureus enterotoxins (SE) used in article:Chella Krishna Vadivel, Andreas Willerslev-Olsen, Martin Rich Javadi Namini, Ziao Zeng, Lang Yan, Maria Danielsen, Maria Gluud, Emil Marek Heymans Pallesen, Karolina Wojewoda, Amra Osmancevic, Signe Hedebo, Yun-Tsan Chang, Lise M. Lindahl, Sergei B. Koralov, Larisa J Geskin, Susan E Bates, Lars Iversen, Thomas Litman, Rikke Bech, Marion Wobser, Emmanuella Guenova, Maria R. Kamstrup, Niels Odum*, Terkild B. Buus*; <b>Staphylococcus aureus induce drug resistance in cancer T cells in Sézary Syndrome</b>. <i>Blood 2024; blood.2023021671.</i> DOI: https://doi.org/10.1182/blood.2023021671SS17.rds is contains R Data Serialization (RDS) file of a SingleCellExperiment (SCE) R object containing integrated single-cell CITE-seq data from four samples (PBS, Romidepsin, SE and Romidepsin+SE treatment) after 36 hours of in vitro culture.The <i>column data </i>(colData) of the SCE object contains the following information from each cell:treatment - whether cell was cultured in the presence (Romidepsin) or absence (DMSO) of Romidepsinstimulation - whether cell was cultured in the presence (SE) or absence (PBS) of S. aureus enterotoxins (SE)group - cell sample condition origin (a combination of stimulation and treatment columns)lane - whether cell was included in lane1 or lane2 of the two 10X Chromium lanes run in parallel from the same cell suspension poolsum - number of Unique Molecular Identifiers (UMIs) assigned to the celldetected - number of genes detected in the cellsubsets_Mito_percent - proportion of UMIs stemming from mitochondrial genessizeFactor - calculated sizeFactor for normalizationTRA_top5 - assignment of TCRalpha chain clonotype to one of the top5 clonotypes detected based on CDR3 amino acid sequenceTRB_top5 - assignment of TCRbeta chain clonotype to one of the top5 clonotypes detected based on CDR3 amino acid sequencecc_phase - inferred cell cycle phasecc_score_s - inferred cell cycle S-phase scorecc_score_G2M - inferred cell cycle G2M-phase scoreleiden_totalVI - leiden clustering assignment from lantent space of totalVI runcell_type - Cell type assignment of the cellSCE object contains three <i>alternative experiment </i>objects:ADT - Antibody derived tag (ADT) UMI counts from surface protein modalityVI_ADT - Antibody derived tag (ADT) UMI counts from surface protein modality denoised and normalized by totalVITF - Transcription factor activation scores (from DoRothEA) for each cell calculated using decoupleRSCE object contains three <i>dimension reductions</i>:PCA - principal component analysis calculated based on highly variable genestotalVI - latent space loadings from totalVI analysisumap - Uniform Manifold Approximation and Projection calculated based on latent space from totalVICode used in the analysis of this data is available on GitHub
DOI: 10.5281/zenodo.10552033
title: Simulation results for three-dimensional (confined) curved screw channels

description: Excel file containing numerical simulation results for the dimensionless flow rate and dissipation rate in confined curved screw channels (without clearance).
DOI: 10.5281/zenodo.10552034
title: Simulation results for three-dimensional (confined) curved screw channels

description: Excel file containing numerical simulation results for the dimensionless flow rate and dissipation rate in confined curved screw channels (without clearance).
DOI: 10.5281/zenodo.10566107
title: Input files for paper Peptide Translocation Across Asymmetric Phospholipid Membranes

description: Input files for simulations in publication: Ladislav Bartoš and Robert Vácha: Peptide Translocation Across Asymmetric phospholipid Membranes
DOI: 10.5281/zenodo.10566108
title: Input files for paper Peptide Translocation Across Asymmetric Phospholipid Membranes

description: Input files for simulations in publication: Ladislav Bartoš and Robert Vácha: Peptide Translocation Across Asymmetric phospholipid Membranes
DOI: 10.6084/m9.figshare.24998807
title: Supplementary Material for: Trichobezoar found accidentally while diagnosing resistance to thyroid hormone

description: Introduction: Bezoars are masses of indigestible foreign material in the gastrointestinal tract, usually in the stomach. These materials could be indigestible fruits, hair, milk products, or tablets. In children, the most common type of bezoar is trichobezoar (formed from hair). 
Case presentation: We describe a female patient who has been complaining about deterioration of mood, collapse without losing consciousness, scotomas, and cardiac arrhythmia for two years. Based on the results of thyroid hormone, resistance to thyroid hormone (RTH) was suspected. Physical examination during hospitalization revealed a palpable upper abdominal mass. Several diagnostic examinations were performed. The abdominal ultrasound showed acoustic shadowing caused by a pathological structure in the upper abdomen. Therefore, the contrast X-ray of the digestive tract revealed a deficit of contrast with an irregular shape in the stomach body and the pylorus region. Due to these results, a gastroscopy was performed, which revealed a large trichobezoar of the stomach. The trichobezoar was surgically removed without complications. 
Conclusion: The case presented shows that these unspecific non-specific symptoms and laboratory test suggesting RTH require multi-path diagnostics and the cooperation of many specialists, ultimately giving a surprising diagnosis. It is crucial to interpret diagnostic examinations with regard to the patient’s physical condition. Diagnosis of trichobezoar requires a detailed search of causes to avoid another incident.
DOI: 10.6084/m9.figshare.24998807.v1
title: Supplementary Material for: Trichobezoar found accidentally while diagnosing resistance to thyroid hormone

description: Introduction: Bezoars are masses of indigestible foreign material in the gastrointestinal tract, usually in the stomach. These materials could be indigestible fruits, hair, milk products, or tablets. In children, the most common type of bezoar is trichobezoar (formed from hair). 
Case presentation: We describe a female patient who has been complaining about deterioration of mood, collapse without losing consciousness, scotomas, and cardiac arrhythmia for two years. Based on the results of thyroid hormone, resistance to thyroid hormone (RTH) was suspected. Physical examination during hospitalization revealed a palpable upper abdominal mass. Several diagnostic examinations were performed. The abdominal ultrasound showed acoustic shadowing caused by a pathological structure in the upper abdomen. Therefore, the contrast X-ray of the digestive tract revealed a deficit of contrast with an irregular shape in the stomach body and the pylorus region. Due to these results, a gastroscopy was performed, which revealed a large trichobezoar of the stomach. The trichobezoar was surgically removed without complications. 
Conclusion: The case presented shows that these unspecific non-specific symptoms and laboratory test suggesting RTH require multi-path diagnostics and the cooperation of many specialists, ultimately giving a surprising diagnosis. It is crucial to interpret diagnostic examinations with regard to the patient’s physical condition. Diagnosis of trichobezoar requires a detailed search of causes to avoid another incident.
DOI: 10.18112/openneuro.ds004943.v1.0.2
title: Characterisation of laminar and vascular spatiotemporal dynamics of CBV and BOLD signals using VASO and ME-GRE at 7T in humans
DOI: 10.6084/m9.figshare.25060226
title: Supplementary Material for: Solid Papillary Carcinoma with Invasion in the Male Breast: A Case Report and Literature Review

description: <b><i>Introduction:</i></b> Solid papillary carcinoma (SPC) accounts for approximately 1% of all breast cancer cases and occurs primarily in postmenopausal women. We report a rare SPC with invasion in the male breast. <b><i>Case Presentation:</i></b> A 73-year-old Japanese man presented with bloody nipple discharge and a palpable left breast mass. Mammography revealed a well-defined high-concentration mass. Ultrasonography scans demonstrated an intracystic 10 mm mass under the left nipple without enlarged axillary lymph nodes. A core needle biopsy revealed a ductal carcinoma with nuclear grade 1, which excluded an invasive carcinoma. Magnetic resonance imaging exhibited a 7 mm intense early enhancement in the left breast. A left mastectomy and sentinel lymph node biopsy were performed. The patient was diagnosed with pathological stage IA (T1b N0 M0) breast carcinoma, an invasive pure SPC type without neuroendocrine markers. The patient was treated with oral tamoxifen and survived without any recurrence for 12 months. <b><i>Conclusion:</i></b> Invasive SPC of the male breast may occur as a palpable mass or nipple discharge in older men and has a good prognosis.
DOI: 10.6084/m9.figshare.25060226.v1
title: Supplementary Material for: Solid Papillary Carcinoma with Invasion in the Male Breast: A Case Report and Literature Review

description: <b><i>Introduction:</i></b> Solid papillary carcinoma (SPC) accounts for approximately 1% of all breast cancer cases and occurs primarily in postmenopausal women. We report a rare SPC with invasion in the male breast. <b><i>Case Presentation:</i></b> A 73-year-old Japanese man presented with bloody nipple discharge and a palpable left breast mass. Mammography revealed a well-defined high-concentration mass. Ultrasonography scans demonstrated an intracystic 10 mm mass under the left nipple without enlarged axillary lymph nodes. A core needle biopsy revealed a ductal carcinoma with nuclear grade 1, which excluded an invasive carcinoma. Magnetic resonance imaging exhibited a 7 mm intense early enhancement in the left breast. A left mastectomy and sentinel lymph node biopsy were performed. The patient was diagnosed with pathological stage IA (T1b N0 M0) breast carcinoma, an invasive pure SPC type without neuroendocrine markers. The patient was treated with oral tamoxifen and survived without any recurrence for 12 months. <b><i>Conclusion:</i></b> Invasive SPC of the male breast may occur as a palpable mass or nipple discharge in older men and has a good prognosis.
DOI: 10.17633/rd.brunel.23284226
title: Impact of lower limb heating and exercise on leg blood flow in trained elderly and young humans

description: <em>The present study investigated the temperature, haemodynamic and tissue oxygenation responses to 90 min single-leg heating, single-leg dynamic knee-extensor exercise with heating, and control-leg (normothermic conditions) single-leg dynamic knee-extensor exercise in elderly and young participants. Dynamic knee-extensor exercise was performed at two workloads, 6W and 12W, continuously for 10 min (5 min for each workload). </em>
<br>
<em><strong>Sheet 1</strong></em> <em>outlines the data structure, abbreviations used and provides a useful schematic of the study protocol. </em>
<br>
<em><strong>Sheet 2</strong></em> <em>reports participant characteristics such as age, mass, height, sex, leg lean/non-lean volumes.</em>
<br>
<em><strong>Sheet 3</strong></em> <em>illustrates the core and skin temperature, central haemodynamic and tissue oxygenation responses during 90 min passive single-leg heating, single-leg heating and dynamic knee-extensor exercise, and control leg knee-extensor exercise.</em>
<br>
<em><strong>Sheet 4</strong></em> <em>reports the leg haeomdynamic responses (blood velocity, arterial diameter, blood flow, shear rate and vascular conductance) in the common, superficial, profunda femoral arteries and popliteal artery during 90 min passive single-leg heating, single-leg heating and dynamic knee-extensor exercise, and control leg knee-extensor exercise.</em>