cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/f31def760db3f8e6cfee5fee07cc693e
title: Relative percent cover of plant species for years 2012-2017 in the Arctic Long-term Ecological Research (ARC-LTER) 1989 moist acidic tundra (MAT89) experimental plots, Toolik Field Station, Alaska.

description: Relative percent cover of plant species was measured in ARC-LTER 1989 moist acidic tundra experimental plots. Treatments include Control (CT), Nitrogen Phosphorus (NP), Nitrogen (N), Phosphorus (P), and Greenhouse Control (GHCT). In 1996 on unassigned plots, an experiment that manipulate herbivory presence and nutrients was started. Treatments include Control Unfenced (NFCT), Nitrogen Phosphorus Unfenced (NFNP), and Small Fenced Control (CTSF). Not all treatments were measured each year.
DOI: 10.6073/pasta/5a5cbb785bde48522bde7b87c65d3c13
title: Soil biogeochemical variables collected on the Arctic Long Term Ecological Research (ARC LTER) experimental plots in moist acidic and dry heath tundra, Arctic LTER Toolik Field Station, Alaska 2017

description: Soil nutrients (total Carbon and Nitrogen, inorganic nutrients (ammonium ion (NH4), nitrate anion (NO3-), phosphate anion (PO43-)); organic nutrients (extractable organic carbon (EOC), extractable total nitrogen (ETN), extractable organic phosphorus (EOP)), microbial biomass, and extracellular enzyme activity on soils sampled from the LTER Dry Heath (organic soils only) and Moist Acidic Tundra (organic and mineral soils) herbivore exclosures and control plots at Toolik Lake, AK in July 2017
DOI: 10.6084/m9.figshare.20099321
title: Carbon dioxide and methane chamber flux data from temperate S. alterniflora salt-marsh

description: A collection of carbon dioxide (CO2), methane (CH4) gas flux and leaf area index (LAI) datasets from a temperate salt-marsh with S. alternifloria vegetation cover (39.09 ˚N, 75.44 ˚W). Measurements were collected from May 2020 through December of 2020 with 2 separate collection times per month for a total of 16 field sampling campaigns. Measurements were performed on 5 plots located within the footprint of an eddy covariance tower which collects ecosystem scale CO2 and CH4 fluxes (Ameriflux Site ID: StJ). Supporting measurements were also performed for leaf-level photosynthesis rates and plot LAI during each chamber campaign. <br> The dark and light flux chambers each occupied 1.0 m2 ground area and the vegetation stand was fully enclosed by the chambers. The sediment chambers each occupied 0.025 m2 ground area and the vegetation stand was excluded from the chambers. CO2 and CH4 fluxes from all chambers were measured with a portable greenhouse gas analyzer (LGR Los Gatos Research, Model 915-0011, San Jose, CA) for approximately 2-3 min after chamber closure. The dark and soil chambers were 100% opaque while the light chamber allowed for 90% transmission of photosynthetically active radiation. Sediment fluxes and leaf-level photosynthesis was measured from 2 points within each of the larger chamber plots. Leaf-level photosynthesis was measured with a portable photosynthesis meter (Li-6400, Licor, Lincoln, NE) and LAI was measured with a ceptometer (Accupar LP80, Meter Inc, Pullman, WA, USA). All measurements were made consecutively over the span of 2-3 hours with leaf-level measurements preformed first, followed by light chambers, dark chambers, sediment chambers and plot LAI. <br> <br>
DOI: 10.5281/zenodo.6670442
title: Androctonus mauritanicus decontaminated gx

description: .
DOI: 10.5281/zenodo.6670447
title: Bathymetry 2015 - 1m - HBC Project

description: Digital Bathymetry data set., cell size 1 m×1m.
description: new version in GTiff format
description: {"references": ["Di Stefano M, Mayer LA. An Automatic Procedure for the Quantitative Characterization of Submarine Bedforms. Geosciences. 2018; 8(1):28. https://doi.org/10.3390/geosciences8010028"]}
DOI: 10.6073/pasta/69929b35dcffc7014ac47c72db06cb3e
title: SBC LTER: Theme 1B: Lobster trap data from marine reserves

description: These data describe catches of California spiny lobster (Panuliris interruptus) in the Santa Barbara Channel. Lobster count and weight were collected from Santa Cruz Island between 2006 and 2018. Data are contained in two tables: 1) Catch per trap across all sites 2) the weight in lobster caught in traps from all sites. This is a data package to support manuscript: Hunter S. Lenihan, Sean P. Fitzgerald, Daniel C. Reed, Jennifer K.K. Hofmeister, and Adrian C. Stier. Increasing spillover enhances southern California spiny lobster catch along marine reserve borders. Ecosphere.
DOI: 10.5281/zenodo.6670441
title: Androctonus mauritanicus decontaminated gx

description: .
DOI: 10.5281/zenodo.6670259
title: Bathymetry 2015 - 1m - HBC Project

description: Digital Bathymetry data set., cell size 1 m×1m.
description: new version in GTiff format
description: {"references": ["Di Stefano M, Mayer LA. An Automatic Procedure for the Quantitative Characterization of Submarine Bedforms. Geosciences. 2018; 8(1):28. https://doi.org/10.3390/geosciences8010028"]}
DOI: 10.6073/pasta/bde14492e8b0a687ef05c304f79d5316
title: Common Raven (Corvus corax) Occupancy Survey and Habitat Selection Data in Cliff Habitat of the Central Appalachian Region, USA, 2009-2010

description: We identified 24 cliff sites across four states of the Central Appalachian Region of the eastern USA (Kentucky, North Carolina, Virginia, and West Virginia) with known raven occupancy at which to perform occupancy surveys for estimating detection probability and the effects of covariates. We surveyed each cliff site 2-4 times in either 2009 or 2010 and recorded time-to-first detection and time to confirmed cliff occupancy during a two-hour survey. Daily surveys were completed between 06:00 and local solar noon. During each survey, we recorded covariates, including air temperature at survey start time, cloud cover, wind speed, and day of year. We also calculated the distance of the observation point from the cliff being surveyed and the forest cover around the cliff. We also collected data thought to be pertinent for habitat selection by ravens on 26 cliffs occupied by ravens and 26 cliffs deemed unoccupied by ravens in 2010. For each cliff, we measured cliff physiographic characteristics, such as cliff length, cliff height, and occlusion by vegetation, and landscape characteristics, including percent forest and urban cover around the cliff and distances from the cliff to the nearest road and human habitation.
DOI: 10.5281/zenodo.6656163
title: JAMES technical report, scripts and data for "'Comparison of C3 photosynthetic responses to light and CO2 predicted by the leaf photosynthesis models of Farquhar et al. (1980) and Goudriaan et al. (1985)"

description: Dear reader, In this repository you will find 7 MATLAB scripts and 3 Excel datasets. The script "A_curves_Figure2.m" calls the function scripts "FvCB_model_Figure2.m", "FvCB_model_Figure2_noTPU" and "G85_model_Figure2" to create Figure 2 of the JAMES publication. The script "G85_Rd_FigureS1" calls the function script "G85_model_FigureS1" to create Figure S1 of the Supporting Information. The script "r2_RMSE_Table2" calculates statistics displayed in Table 2 of the JAMES publication. The Excel worksheet "Table2.xlsx" contains the values in Table 2 of the JAMES publication for quick data copying. The Excel worksheets "FvCBparameters_fitted_withTPU.xlsx" and "FvCBparameters_fitted_noTPU.xlsx" contains fitted FvCB model parameter values that were obtained using the "fitaci" function from the plantecophys R package (Duursma, 2015). <br> <br> Kind regards, Kevin van Diepen
DOI: 10.5281/zenodo.6656162
title: JAMES technical report, scripts and data for "'Comparison of C3 photosynthetic responses to light and CO2 predicted by the leaf photosynthesis models of Farquhar et al. (1980) and Goudriaan et al. (1985)"

description: Dear reader, In this repository you will find 7 MATLAB scripts and 3 Excel datasets. The script "A_curves_Figure2.m" calls the function scripts "FvCB_model_Figure2.m", "FvCB_model_Figure2_noTPU" and "G85_model_Figure2" to create Figure 2 of the JAMES publication. The script "G85_Rd_FigureS1" calls the function script "G85_model_FigureS1" to create Figure S1 of the Supporting Information. The script "r2_RMSE_Table2" calculates statistics displayed in Table 2 of the JAMES publication. The Excel worksheet "Table2.xlsx" contains the values in Table 2 of the JAMES publication for quick data copying. The Excel worksheets "FvCBparameters_fitted_withTPU.xlsx" and "FvCBparameters_fitted_noTPU.xlsx" contains fitted FvCB model parameter values that were obtained using the "fitaci" function from the plantecophys R package (Duursma, 2015). <br> <br> Kind regards, Kevin van Diepen
DOI: 10.5519/qd.4e78i785
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (158 records)
DOI: 10.17632/nxvhfy87t8.1
title: Myelin like electrogenic filamentation and Liquid Microbial Fuel Cells Dataset overview.

description: Biofilm at water-oil interface of hypoxic water columns of microcosms, prepared from a lacustrine sample, that used diesel as a carbon source was found to show electrogenic properties.  These microcosms named, liquid microbial fuel cells (L-MFCs) were electrically characterized using a custom electronic analyzer; accurate determination of voltage (V), power density (W/m 2), and current density (A/m2) for both charge and discharge phases was carried out. The instrument made it possible to carry out cell characterizations using resistive loads between 0 Ω (Ohm) and 10 kΩ. During the hypoxic and electrogenic phase, the synthesis of a system of “bacterial piping induction”, produced filaments of hundreds of micrometers in which the microbial cells are hosted. Ultrastructural microscopy collected by scanning (SEM), transmission (TEM), immunofluorescence, Thunder Imager 3D, confocal laser scanning (CLSM) microscopy revealed a “myelin like“   structure during filamentation processes; this “myelin like” structure exhibited cross-reactivity towards different epitopes of the myelin basic protein (MBP) and Claudin 11 (O4) of human oligodendrocytes. The disclosure of these filamentation processes could be helpful to describe further unconventional microbial structures in aquatic ecosystems and of the animal world.
DOI: 10.17632/st7md3ss85.2
title: FORTRESS: FORTRAN programs to solve coupled Gross-Pitaevskii equations for spin-orbit coupled spin-f Bose-Einstein condensate with spin f = 1 or 2

description: We provide here the updated versions of OpenMP parallelized FORTRAN 90/95 programs to numerically study the ground states and/or the dynamics of homogeneous or trapped spin-1 or spin-2 Bose-Einstein condensates (BECs) with anisotropic spin-orbit (SO) coupling. The coupled sets of three or five Gross-Pitaevskii (GP) equations, respectively, for a spin-1 or a spin-2 Bose-Einstein condensate (BEC) are solved using a time-splitting Fourier spectral method.
DOI: 10.17632/r26nzs66mn.2
title: Thermal proteome profiling reveals distinct target selectivity for differentially oxidized oxysterols

description: The dataset contains excel macro used for the data analysis from Thermal Proteomic Profiling exeriments aimed to identify the protein targets of three A- and B-ring oxidized sterols (cholestane-3β,5α,6β-triol (CT), 7keto-cholesterol (7-KC), 4ß-hydroxycholesterol (4ß-HC) ) and a side-chain oxidized sterol (25-hydroxycholesterol (25-HC)). The excel macros contain the list of the identified proteome in the experiments with related thermal shifts (ΔTm) measured in three independent experiments.
DOI: 10.17632/vz7tcc3jrj.1
title: EMS PP-PTSD

description: First-time mothers data with measures of YSQ, CEQ, CityBiTs, plus demographic data.
DOI: 10.17632/yzx6tjb3hf.1
title: Anomalous persistent fluid flow through thin films in porous media (Data)

description: We visualize two phase flow in indexed match porous media using a laser scanning confocal microscope (Leica SP-2), with a 10x objective lens with NA=0.4, and we use a 488-nm laser for excitation of all fluorophores. We visualize the non-wetting phase using an emission wavelength of 615 nm, and the fluorescent beads within the non-wetting phase using the emission wavelength of 514 nm. We image each frame having a 0.5 × 0.5 mm cross section, a 3 µm depth of field, at a spacing of 2 µm for the PIV imaging and no overlapping space for the 3D reconstructed images. Each frame takes about 100 milliseconds to collect; and the full stack of 300 frames takes roughly a minute to collect. The overlapping of the frames enables us to determine the velocity field of the wetting phase using particle image velocimetry (PIV) through correlation of the particle positions in consecutive frames. We also image a 6×1×0.3 mm volume of the porous medium by stitching stacks together; the full volume can be imaged in approximately an hour. From these images, we reconstruct the 3D structure of the porous media, the residual ganglia, and the displacing phase. The images before snap-off were taken after 24 hours corresponding to ~80 additional PV of steady state flow of the displacing fluid, and the image after snap-off was taken approximately one hour later.
DOI: 10.17632/p6t4hz8n3n.1
title: Primary and Tabular Data Set for the article "Evaluation of Benchmark Practices of Training and Development of Professional Education Educators in India: A Study with respect to Aspirants"

description: Primary and Tabular Data Set for the article "Evaluation of Benchmark Practices of Training and Development of Professional Education Educators in India: A Study with respect to Aspirants".
DOI: 10.17632/vxcv2dxscw.2
title: Seabed images and programs  for a Deep Learning training and testing on the MAR

description: 
1. Datasets.zip
This collection of images were part of that  used as training and testing datasets for a  a Deep Learning on the MAR in a paper that will published in Ocean Engineering recently.

2. Deep Learning programs.zip
This file includes the program and related modules of the ResNet network model used. The file named train.py can be used for training, extract image features, and finally output weight information. 
Resnet34.pth is the pre-training weight. predict.py can be used to classify seabed images.

3. Weights.zip 
This file is the weight information output after the training, where Data_set_M.pth is the result of this example data set, and Data_set_L.pth is the final result of this experiment.
DOI: 10.17632/pw339snbvs.2
title: Survey Data on Farmers Awareness, Perception level towards futures market

description: Price risk is one of the major source of risk faced by all farmers. This data set captures  the information sources used by the farmers for taking pricing decisions. A survey was carried out with 314 Chillies farmers at Ramanathapuram District of TamilNadu, 383 Turmeric Cultivators in the Erode District of TamilNadu and 221 Cardamom growers in Theni District of TamilNadu. The awareness level and perception towards commodity futures market and farmers preference towards usage of marketing alternatives in selling their produce were recorded in the dataset. The dataset is in MS-Excel format.
DOI: 10.17632/bykxpt75sn.1
title: Supplementary Data: A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study

description: Plasma of two observational cohorts of inpatients with SARS-COV2 were measured using a targeted liquid chromatography - multiple reaction monitoring mass spectrometry assay (LC-MRM). 
The assay captures peptides that are associated with COVID-19 severity, and that are prognostic about COVID-19 outcome. Provided are the the LC-MRM measurements for the respective cohorts, as well as custom code used to predict COVID-19 outcome and severity.
Details, and corresponding meta data linking to the measurement data are available in the original publication.
DOI: 10.17632/5w7npfbv6f.1
title: Carbon and oxygen isotope data (550 B.C. to 950 A.D.) from Basura cave (BA14-1), northern Italy

description: This dataset contains the carbon and oxygen isotope data during 550 B.C. to 950 A.D. from Basura cave, northern Italy (BA14-1)
DOI: 10.5281/zenodo.6670571
title: Bolitophila hybrida decontaminated gx

description: .
DOI: 10.5281/zenodo.6670570
title: Bolitophila hybrida decontaminated gx

description: .
DOI: 10.17632/b7th8yzc5y.1
title: Weather files for Guangdong Province

description: This is a dataset for weather files of Guangzhou city and Yangjiang city.
DOI: 10.17632/yg3f3x3mbb.1
title: Tracking gastrointestinal nematode risk on cattle farms through pasture contamination mapping

description: Raw faecal egg count and climate data used to populate the model, and pseudocode to generate model outputs for the manuscript 'Tracking gastrointestinal nematode risk on cattle farms through pasture contamination mapping' are made available.
DOI: 10.15468/dl.vg56yw
title: Occurrence Download

description: A dataset containing 25378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pomoxis annularis Rafinesque, 1818)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25378 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051619-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yjjyd
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Starksia culebrae (Evermann & Marsh, 1899)"
 ]
}

 The dataset includes 77 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059643-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72cjv5
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-25.45277 67.17108,-31.96734 38.6907,-21.19324 25.32748,-13.92699 25.16044,-10.00154 33.6795,-1.73304 36.1851,11.21258 38.2731,12.96651 34.9323,30.83982 33.34542,42.53263 35.85102,43.11728 49.04721,33.34542 53.89138,33.59598 72.85045,-25.45277 67.17108))",
 "TaxonKey is Culiseta alaskaensis (Ludlow, 1906)",
 "Year 2000-2020"
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072260-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az2t5w
title: Occurrence Download

description: A dataset containing 2807 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cerdocyon thous (Linnaeus, 1766)"
 ]
}

 The dataset includes 2807 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019416-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrehg2
title: Occurrence Download

description: A dataset containing 5954128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5954128 records from 3197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0310560-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.14795147.v1
title: Additional file 3 of Genome-wide DNA methylation analysis in Chinese Chenghua and Yorkshire pigs

description: Additional file 3: Table S3. Summary of hypermethylation genes in CHP vs. YP.
DOI: 10.18154/rwth-2024-01150
title: Ventilaton Data for anonymization evaluation

description: This data set contains twelve airway pressure and flow episodes from the ventilation of lambs, as well as the corresponding pulse oximetry. his data were used to evaluate the “Medical Data Anonymization Tool” (see below). The dataset also contains the data processed by the tool in order to make the evaluation results deterministically reproducible.
DOI: 10.24403/jp.1330391
title: Frohne, D. & Jensen, U.: Systematik des Pflanzenreichs unter besonderer Berücksichtigung chemischer Merkmale und pflanzlicher Drogen. - 4. Aufl. - Stuttgart ; Jena ; New York : Gustav Fischer Verlag, 1992 / [rezensiert von] H. Manitz
DOI: 10.6084/m9.figshare.22141178.v1
title: Causal Inference in Transcriptome-Wide Association Studies with Invalid Instruments and GWAS Summary Data

description: Transcriptome-wide association studies (TWAS) have recently emerged as a popular tool to discover (putative) causal genes by integrating an outcome GWAS dataset with another gene expression/transcriptome GWAS (called eQTL) dataset. In our motivating and target application, we’d like to identify causal genes for low-density lipoprotein cholesterol (LDL), which is crucial for developing new treatments for hyperlipidemia and cardiovascular diseases. The statistical principle underlying TWAS is (two-sample) two-stage least squares (2SLS) using multiple correlated SNPs as instrumental variables (IVs); it is closely related to typical (two-sample) Mendelian randomization (MR) using independent SNPs as IVs, which is expected to be impractical and lower-powered for TWAS (and some other) applications. However, often some of the SNPs used may not be valid IVs, e.g. due to the widespread pleiotropy of their direct effects on the outcome not mediated through the gene of interest, leading to false conclusions by TWAS (or MR). Building on recent advances in sparse regression, we propose a robust and efficient inferential method to account for both hidden confounding and some invalid IVs via two-stage constrained maximum likelihood (2ScML), an extension of 2SLS. We first develop the proposed method with individual-level data, then extend it both theoretically and computationally to GWAS summary data for the most popular two-sample TWAS design, to which almost all existing robust IV regression methods are however not applicable. We show that the proposed method achieves asymptotically valid statistical inference on causal effects, demonstrating its wider applicability and superior finite-sample performance over the standard 2SLS/TWAS (and MR). We apply the methods to identify putative causal genes for LDL by integrating large-scale lipid GWAS summary data with eQTL data.
DOI: 10.5281/zenodo.7325599
title: Supplementary 1 The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on COX1, COX2, and IGS

description: The ingroup of <em>Apis cerana</em> and outgroup species used for haplotype and phylogenetic analysis based on <em>COX1, COX2,</em> and IGS
DOI: 10.5281/zenodo.7328718
title: Supplementary 1 The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on COX1, COX2, and IGS

description: The ingroup of <em>Apis cerana</em> and outgroup species used for haplotype and phylogenetic analysis based on <em>COX1, COX2,</em> and IGS
DOI: 10.5281/zenodo.7606024
title: Supplementary 1 The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on COX1, COX2, and IGS

description: The ingroup of <em>Apis cerana</em> and outgroup species used for haplotype and phylogenetic analysis based on <em>COX1, COX2,</em> and IGS
DOI: 10.5281/zenodo.10464060
title: Supplementary 1 The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on the cox1, cox2 genes, and igs

description: The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on the cox1, cox2 genes, and igs
DOI: 10.5281/zenodo.10614987
title: Supplementary 1 The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on the cox1, cox2 genes, and igs

description: The ingroup of Apis cerana and outgroup species used for haplotype and phylogenetic analysis based on the cox1, cox2 genes, and igs