cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24406371.v1
title: Aggregation patterns in juvenile southern king crab <i>Lithodes santolla</i> (Molina, 1782). Are the aggregations related to moulting activity?

description: The early life history of decapod species involves several stages and ontogeny-related shifts in habitat requirements and behaviour. Early publications have reported that, in the San Jorge Gulf (45–47°S), Argentina, juvenile southern king crab <i>Lithodes</i> <i>santolla</i> (Molina, 1782) (SKC) remain in rocky coastal habitats for at least three years, prior to their migration to soft bottoms. In this study, we analysed the gregarious behaviour of juvenile SKCs and its relation with moulting activity through the early ontogeny of the species. Different aggregation patterns were observed in SKC juveniles during sampling. These aggregation patterns were related to an increase in moulting activity. SKC 1+ and 2+ formed small groups of 7–31 juveniles in holes or cracks at shallower depths. A large aggregation was recorded in November 2014 associated with <i>Macrocystis pyrifera</i> forests. This aggregation involved advanced juveniles 3+, probably at the end of their stay in the coastal environment. Our results suggest that the aggregation of juvenile SKCs is related to high moulting activity and that differences in the aggregation patterns are related to ontogeny. The aggregation of advanced juveniles may reflect a (re)synchronous moult prior to a coordinated abandonment of the coastal environment. The aggregation behaviour of SKC juveniles is related to an increase in moulting activity.The aggregation pattern exhibits differences related to the size/age of SKC juveniles.SKCs form large aggregations at the end of their stay in coastal environments. The aggregation behaviour of SKC juveniles is related to an increase in moulting activity. The aggregation pattern exhibits differences related to the size/age of SKC juveniles. SKCs form large aggregations at the end of their stay in coastal environments.
DOI: 10.6084/m9.figshare.24406371
title: Aggregation patterns in juvenile southern king crab <i>Lithodes santolla</i> (Molina, 1782). Are the aggregations related to moulting activity?

description: The early life history of decapod species involves several stages and ontogeny-related shifts in habitat requirements and behaviour. Early publications have reported that, in the San Jorge Gulf (45–47°S), Argentina, juvenile southern king crab <i>Lithodes</i> <i>santolla</i> (Molina, 1782) (SKC) remain in rocky coastal habitats for at least three years, prior to their migration to soft bottoms. In this study, we analysed the gregarious behaviour of juvenile SKCs and its relation with moulting activity through the early ontogeny of the species. Different aggregation patterns were observed in SKC juveniles during sampling. These aggregation patterns were related to an increase in moulting activity. SKC 1+ and 2+ formed small groups of 7–31 juveniles in holes or cracks at shallower depths. A large aggregation was recorded in November 2014 associated with <i>Macrocystis pyrifera</i> forests. This aggregation involved advanced juveniles 3+, probably at the end of their stay in the coastal environment. Our results suggest that the aggregation of juvenile SKCs is related to high moulting activity and that differences in the aggregation patterns are related to ontogeny. The aggregation of advanced juveniles may reflect a (re)synchronous moult prior to a coordinated abandonment of the coastal environment. The aggregation behaviour of SKC juveniles is related to an increase in moulting activity.The aggregation pattern exhibits differences related to the size/age of SKC juveniles.SKCs form large aggregations at the end of their stay in coastal environments. The aggregation behaviour of SKC juveniles is related to an increase in moulting activity. The aggregation pattern exhibits differences related to the size/age of SKC juveniles. SKCs form large aggregations at the end of their stay in coastal environments.
DOI: 10.6084/m9.figshare.25018469
title: Plant Chloroplast and Mitochondrial Genomes

description: Chloroplast and Mitochondrial Genome Database for TIPP_plastid
DOI: 10.6084/m9.figshare.25018500.v1
title: Nexus between foreign direct investment, trade openness, and carbon emissions: fresh insights using innovative methodologies

description: Previous research has explored the relationship between carbon emissions, trade openness, and foreign direct investment (FDI), but these studies have not specifically examined carbon emissions using sector-level data. This paper expands upon the existing body of literature by employing a threshold regression approach, utilizing the intensity of carbon emissions as a primary variable to scrutinize the effects of FDI and trade openness on carbon emissions at a sectoral level. Our findings indicate that the impact is contingent upon the chosen thresholds, thereby underscoring the influence of foreign trade openness and FDI on carbon emissions within the industrial sector. The effect of FDI on sector-specific industrial carbon emissions is not constant, with the influence coefficient varying over time. In contrast, trade openness positively and negatively impacts carbon emissions. Specifically, increased foreign trade openness leads to a decrease in carbon emissions in less carbon-intensive sectors. Factors such as the intensity of economic activity, employment levels, independent technical innovation, and per capita GDP significantly influence carbon emissions within industrial sectors.
DOI: 10.22000/1895
title: WoerlACP2018

description: Data to reproduce the figures in publication.
DOI: 10.6084/m9.figshare.25017107
title: datasets

description: Input data for the model<br>
DOI: 10.34740/kaggle/dsv/7426104
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.6084/m9.figshare.25018502
title: barley_maskrcnn

description: supp figure of https://www.nature.com/articles/s42003-020-0905-5<br>CC-BY-NC-4.0
DOI: 10.6084/m9.figshare.25018502.v2
title: barley_maskrcnn

description: supp figure of https://www.nature.com/articles/s42003-020-0905-5<br>CC-BY-NC-4.0
DOI: 10.6084/m9.figshare.25018502.v1
title: barley_maskrcnn.zip

description: supp figure of https://www.nature.com/articles/s42003-020-0905-5<br>CC-BY-NC-4.0
DOI: 10.17895/f2m0-xp31
title: Report of the Industry Workshop of the MEESO Project held on 29 March 2021
title: MEESO_Industry_workshop_2021

description: Researchers from Wageningen University and Research, on behalf of the MEESO project, held a workshop about mesopelagic fishing for industry stakeholders. The workshop was hosted online on Microsoft Teams and had a duration of 3.5 hours. The objectives of the workshop were as follows: (1) To bring stakeholders from the fishing industry, processing companies, gear manufacturing companies, and research together to share insights and develop contacts; (2) To understand country-specific factors and interests regarding fishing in the mesopelagic zone; (3) To gather questions that stakeholders have about the mesopelagic zone and offer preliminary answers; and (4) To understand which questions are of greatest priority for the various stakeholders. Approximately 45 people participated in the workshop, from Norway, Iceland, Ireland, Denmark, the Netherlands and Spain. Data include online whiteboards, which are not shared because of privacy reasons, and a workshop report.
description: This entry contains data on two cruises performed in 2019 and 2021 in relation to the MEESO project. The dataset specifies Dates, times, positions, bottom depth trawl horizontal and vertical opening, sampling depth, total catch and individual species catch.
DOI: 10.7488/ds/7546
title: Blood-based epigenome-wide analyses of chronic low-grade inflammation across diverse population cohorts - Bayesian EWAS and CRP Predictors

description: This dataset contains four files that are separated into two groups based on the analyses they inform in the manuscript by Hillary et al. entitled ‘Blood-based epigenome-wide analyses of chronic low-grade inflammation across diverse population cohorts’. The manuscript is available as: https://doi.org/10.1101/2023.11.02.23298000. The first group contains one file called ‘crp_bayespr_basic_model_hillaryetal.csv’. This file contains the output of a Bayesian penalised regression model that was used to perform an epigenome-wide association study on blood C-reactive protein or CRP levels in Generation Scotland participants (N=17,936). The model examined the association between 752,722 CpG sites and log-transformed blood CRP levels. CRP levels were adjusted for age and sex prior to entry into the models. CpG beta-values were regressed on age, sex, estimated white blood cell proportions and experimental batch. Residuals were scaled to mean zero and unit variance and entered into the Bayesian model. The coefficients reflect these standardised variables. Results from a standard linear epigenome-wide association study are available on the EWAS Catalog. The second group contains three files called ‘elastic_net_predictor_for_crp.csv’, ‘bayespr_predictor_for_crp.csv’ and ‘pca_elnet_prediction_object_for_crp.rds’. These files contain CpG sites and their weights from three different prediction methods. The methods were elastic net regression, Bayesian penalised regression and elastic net combined with principal component analysis, respectively. The predictors for C-reactive protein levels were trained in Generation Scotland and can be applied to external cohorts. Prediction scripts and the predictors (grouped together) are available in the following repository: https://doi.org/10.5281/zenodo.10154736.
DOI: 10.6084/m9.figshare.25018301
title: Data for "High yield and wide lateral size growth of α-Mo2C: Exploring the boundaries of CVD growth of bare MXene analogues"

description: Images and data underlying the results in published scientific paper "High yield and wide lateral size growth of α-Mo2C: Exploring the boundaries of CVD growth of bare MXene analogues" (DOI 10.1088/1361-6528/ad1c97)
DOI: 10.6084/m9.figshare.25018301.v2
title: Data for "High yield and wide lateral size growth of α-Mo2C: Exploring the boundaries of CVD growth of bare MXene analogues"

description: Images and data underlying the results in published scientific paper "High yield and wide lateral size growth of α-Mo2C: Exploring the boundaries of CVD growth of bare MXene analogues" (DOI 10.1088/1361-6528/ad1c97)
DOI: 10.6084/m9.figshare.25018301.v1
title: Data from "High yield and wide lateral size growth of α-Mo2C: Exploring the boundaries of CVD growth of bare MXene analogues"

description: Images and data underlying the results in published scientific paper "High yield and wide lateral size growth of α-Mo2C: Exploring the boundaries of CVD growth of bare MXene analogues" (DOI 10.1088/1361-6528/ad1c97)
DOI: 10.5281/zenodo.10526605
title: Systemic proteome adaptions to 7-day complete caloric restriction in humans

description: We conducted a proteomic experiment among 12 healthy volunteers (5 women, 7 men) participating in a 7-day water-only fast. About 3000 proteins were measured using the Olink Explore 3072 Technology from plasma samples drawn daily under the intervention, as well as two days before and three days thereafter. The data provided here have been prepared according to what has been reported in this publication (link to be added), which you need to cite when publishing with this data.

Data usage agreement & data access

By downloading any of the data provided, you agree to the following conditions.

PLEASE READ THESE LICENCE TERMS CAREFULLY.

Disclaimer statement

These data are provided on an “as-is” basis, without warranty of any type, expressed or implied, including but not limited to any warranty as to their performance, merchantability, or fitness for any particular purpose.

Investigators will use these results for scientific research and educational use only, use for commercial businesses is not permitted.

Investigators will not include these results in meta-analyses of any kind for single or more entities (protein targets/metabolites) without explicit written consent and/ or a collaborative agreement with the respective data owners (corresponding author(s)).

Reposting or distribution of omicscience results files is prohibited.

Investigators certify that they are in compliance with all applicable local, state, and federal laws or regulations and institutional policies regarding human subjects and genetics research.

Investigators will never attempt to identify any participants.

Investigators will cite the appropriate omicscience publications, this resource (www.omicscience.org) and respective acknowledgements in any communications or publications arising directly or indirectly from these data.

All data is made available under a CC-BY-NC-ND 4.0 International license.

Data provided

We provide two files.





'Fasting.proteomics.Olink.Explore.label.20240109.txt' contains basic informations about assayed protein targets, including protein encoding genes. The column 'OlinkID' refers to the entries in the data set and 'Assay' contains the name of the protein. Please note that some proteins have been measured multiple times.




'Fasting.proteomics.Olink.Explore.20240109.txt' contains NPX values (log2 scale) for a total of 2941 Olink Assays targeting 2923 unique proteins. Missing values are coded as 'NA'. There are two columns providing unique identifiers for each sample. 'Participant' is a randomly generated ID indicating from which participant the sample has been drawn, and 't.point' indicates the timepoint (days) at which the sample has been drawn. The timepoints -2 and 0 mark measurements before the fasting intervention, 1-7 measurements during the intervention (all morning samples), and 10 marks 3 days after participants resumed eating. Please see the related publication or the study design below for more details.
DOI: 10.5281/zenodo.10526606
title: Systemic proteome adaptions to 7-day complete caloric restriction in humans

description: We conducted a proteomic experiment among 12 healthy volunteers (5 women, 7 men) participating in a 7-day water-only fast. About 3000 proteins were measured using the Olink Explore 3072 Technology from plasma samples drawn daily under the intervention, as well as two days before and three days thereafter. The data provided here have been prepared according to what has been reported in this publication (link to be added), which you need to cite when publishing with this data.

Data usage agreement & data access

By downloading any of the data provided, you agree to the following conditions.

PLEASE READ THESE LICENCE TERMS CAREFULLY.

Disclaimer statement

These data are provided on an “as-is” basis, without warranty of any type, expressed or implied, including but not limited to any warranty as to their performance, merchantability, or fitness for any particular purpose.

Investigators will use these results for scientific research and educational use only, use for commercial businesses is not permitted.

Investigators will not include these results in meta-analyses of any kind for single or more entities (protein targets/metabolites) without explicit written consent and/ or a collaborative agreement with the respective data owners (corresponding author(s)).

Reposting or distribution of omicscience results files is prohibited.

Investigators certify that they are in compliance with all applicable local, state, and federal laws or regulations and institutional policies regarding human subjects and genetics research.

Investigators will never attempt to identify any participants.

Investigators will cite the appropriate omicscience publications, this resource (www.omicscience.org) and respective acknowledgements in any communications or publications arising directly or indirectly from these data.

All data is made available under a CC-BY-NC-ND 4.0 International license.

Data provided

We provide two files.





'Fasting.proteomics.Olink.Explore.label.20240109.txt' contains basic informations about assayed protein targets, including protein encoding genes. The column 'OlinkID' refers to the entries in the data set and 'Assay' contains the name of the protein. Please note that some proteins have been measured multiple times.




'Fasting.proteomics.Olink.Explore.20240109.txt' contains NPX values (log2 scale) for a total of 2941 Olink Assays targeting 2923 unique proteins. Missing values are coded as 'NA'. There are two columns providing unique identifiers for each sample. 'Participant' is a randomly generated ID indicating from which participant the sample has been drawn, and 't.point' indicates the timepoint (days) at which the sample has been drawn. The timepoints -2 and 0 mark measurements before the fasting intervention, 1-7 measurements during the intervention (all morning samples), and 10 marks 3 days after participants resumed eating. Please see the related publication or the study design below for more details.
DOI: 10.25345/c5862bp1d
title: MassIVE MSV000093884 - Metabolic engineering of Streptomyces peucetius for biosynthesis of N,N-dimethylated anthracyclines
title: Daunorubicin and doxorubicin, two anthracycline polyketides produced by Streptomyces peucetius, are potent anticancer agents that are widely used in chemotherapy, despite severe side effects. Recent advances have highlighted the potential of producing improved derivatives with reduced side effects by incorporating L-rhodosamine, the N,N-dimethyl analogue of the native amino sugar moiety. In this study, we aimed to produce N,N-dimethylated anthracyclines by engineering the doxorubicin biosynthetic pathway in the industrial S. peucetius strain GOO1. To achieve this, we introduced genes from the aclarubicin biosynthetic pathway encoding the sugar N-methyltransferases AclP and AknX2. Furthermore, the native gene for glycosyltransferase DnrS was replaced with genes encoding the aclarubicin glycosyltransferases AknS and AknT. Additionally, the gene for methylesterase RdmC from the rhodomycin biosynthetic pathway was introduced. A new host was engineered successfully, whereby genes from the aclarubicin pathway were introduced and expressed. LC-MS/MS analysis of the engineered strains showed that dimethylated sugars were efficiently produced, and that these were incorporated ino the anthracycline biosynthetic pathway to produce the novel dimethylated anthracycline N,N-dimethyldaunorubicin. Further downstream tailoring steps catalysed by the cytochrome P450 monooxygenase DoxA exhibited limited efficacy with N,N-dimethylated substrates. This resulted in only low production levels of N,N-dimethyldaunorubicin and no N,N-dimethyldoxorubicin, most likely due to the low affinity of DoxA for dimethylated substrates. S. peucetius GOO1 was engineered such as to produce N,N-dimethylated sugars, which were incorporated into the biosynthetic pathway. This allowed the successful production of N,N-dimethyldaunorubicin, an anticancer drug with reduced cytotoxicity. DoxA is the key enzyme that determines the efficiency of the biosynthesis of N,N-dimethylated anthracyclines, and engineering of this enzyme will be a major step forwards towards the efficient production of more N,N-dimethylated anthracyclines, including N,N-dimethyldoxorubicin. This study provides valuable insights into the biosynthesis of clinically relevant daunorubicin derivatives, highlighting the importance of combinatorial biosynthesis.
DOI: 10.23729/e7fa4fad-c947-49f5-8343-49681c7b5ff4
title: Ammonium flux analysis of KCC2 missense variant p.(Arg231His)

description: Ammonium flux assay is used to measure the ion transport efficiency of wild-type KCC2 and its missense variant p.(Arg231His) overexpressed in N2a cells.
DOI: 10.57745/adzwmr
title: Donnees_SAFARI_14_15_epis.tab

description: :unav
DOI: 10.57745/qcb2t6
title: Donnees_SAFARI_14_15_zone.txt

description: :unav
DOI: 10.57745/0dahwc
title: Donnees_SAFARI_14_15_maladies.tab

description: :unav
DOI: 10.57745/4tfb9t
title: Donnees_SAFARI_14_15_maladies.txt

description: :unav
DOI: 10.57745/dum0pl
title: Donnees_SAFARI_14_15_epis.txt

description: Description des données relatives à la description des épis de blé.
DOI: 10.57745/hcbc2q
title: Donnees_SAFARI_14_15_essai.txt

description: :unav
DOI: 10.57745/pfitvy
title: Donnees_SAFARI_14_15_essai.tab

description: :unav
DOI: 10.57745/qdniek
title: Donnees_SAFARI_14_15_rep.txt

description: :unav
DOI: 10.57745/hgcnym
title: Donnees_SAFARI_14_15_rep.tab

description: :unav
DOI: 10.57745/pe1ntz
title: Donnees_SAFARI_14_15_hauteurs.txt

description: :unav
DOI: 10.57745/rnk7o4
title: Donnees_SAFARI_14_15_zone.tab

description: :unav
DOI: 10.57745/ucmnd0
title: Donnees_SAFARI_14_15_hauteurs.tab

description: :unav
DOI: 10.5281/zenodo.10432246
title: The benchmark test suites of the FJSP-MW
DOI: 10.5281/zenodo.10432247
title: The benchmark test suites of the FJSP-MW
DOI: 10.5281/zenodo.10526675
title: Frictional properties of natural granite fault gouge under hydrothermal conditions: A case study of strike-slip fault from Anninghe Fault zone, southeastern Tibetan Plateau

description: We performed friction experiments on natural granite gouge under hydrothermal conditions to investigate roles of the Anninghe Fault (ANHF) on seismogenesis in the continental crust. In this dataset, we report processed data after correction. Detailed information about the files in the zip-files is given in the explanatory file Lei-et-al-2023-Data-Description.pdf.
DOI: 10.5281/zenodo.10427710
title: Frictional properties of natural granite fault gouge under hydrothermal conditions: A case study of strike-slip fault from Anninghe Fault zone, southeastern Tibetan Plateau

description: We performed friction experiments on natural granite gouge under hydrothermal conditions to investigate roles of the Anninghe Fault (ANHF) on seismogenesis in the continental crust. In this dataset, we report processed data after correction. Detailed information about the files in the zip-files is given in the explanatory file Lei-et-al-2023-Data-Description.pdf.
DOI: 10.5281/zenodo.10427711
title: Frictional properties of natural granite fault gouge under hydrothermal conditions: A case study of strike-slip fault from Anninghe Fault zone, southeastern Tibetan Plateau

description: We performed friction experiments on natural granite gouge under hydrothermal conditions to investigate roles of the Anninghe Fault (ANHF) on seismogenesis in the continental crust. In this dataset, we report processed data after correction. Detailed information about the files in the zip-files is given in the explanatory file Lei-et-al-2023-Data-Description.pdf.
DOI: 10.23729/2231c341-4e16-4576-8dd9-930ec98147c4
title: Gramicidin-perforated patch-clamp recordings related to KCC2 variant p.(Arg231His)

description: Data from gramicidin-perforated patch-clamp recordings on N2a cells to study the functionality of KCC2 variant p.(Arg231His).