cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3563727
title: Supplement 1. Data and R and WinBUGS code for running the occupancy model described in the paper.

description: File List bbwo_occ.r -- (MD5: c32c59d390e4c2472d85a9a83bcc2064) bbwo_dat.txt -- (MD5: a1f979c217060a8b2d03e12957c32059) Description The 'bbwo_occ.r' script reads in data from 'bbwo_dat.txt', writes a model file for WinBUGS ('bbwoEAmodel.txt'), runs the model in WinBUGS (via the R2WinBUGS package) and stores results in an R list called 'out'. The file 'bbwo_dat.txt' contains encounter history and covariate data used in the occupancy model. Fields include: fire – Name of fire area designated by the USDA Forest Service point – Four-character alpha-numeric identifier for survey points int.1 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the first 3-min passive survey interval. int.2 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the second 2-min passive survey interval. NAs indicate no data recorded for that interval int.3 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the first call-broadcast survey interval. int.4 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the second call-broadcast survey interval. NAs indicate no data recorded for that interval int.5 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the third call-broadcast survey interval. NAs indicate no data recorded for that interval fa – Age of fire area (i.e., time since most recent burn) in years (range = 1–10) lat – Latitude of survey point in decimal degrees snag.ct – Number of stems counted from the survey point using a 10 basal area factor (BAF) timber cruising crutch cc – Change in percent canopy cover at the survey point based on satellite derived relativized difference normalized burn ratio score RdNBR (Miller et al. 2009. Remote Sensing of Environment 113:645–656) summarized at 8,100-m<sup>2</sup> (90 m × 90 m pixel) resolution by averaging 900-m<sup>2</sup> (30 m × 30 m pixel) values from Geographic Information System (GIS) coverages provided by the USDA Forest Service (J. D. Miller) using the raster package (http://cran.r-project.org/web/packages/raster/vignettes/Raster.pdf) in R elev.res – Residuals from a regression of survey-point elevation (m) on survey-point latitude
DOI: 10.6084/m9.figshare.3563727.v1
title: Supplement 1. Data and R and WinBUGS code for running the occupancy model described in the paper.

description: File List bbwo_occ.r -- (MD5: c32c59d390e4c2472d85a9a83bcc2064) bbwo_dat.txt -- (MD5: a1f979c217060a8b2d03e12957c32059) Description The 'bbwo_occ.r' script reads in data from 'bbwo_dat.txt', writes a model file for WinBUGS ('bbwoEAmodel.txt'), runs the model in WinBUGS (via the R2WinBUGS package) and stores results in an R list called 'out'. The file 'bbwo_dat.txt' contains encounter history and covariate data used in the occupancy model. Fields include: fire – Name of fire area designated by the USDA Forest Service point – Four-character alpha-numeric identifier for survey points int.1 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the first 3-min passive survey interval. int.2 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the second 2-min passive survey interval. NAs indicate no data recorded for that interval int.3 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the first call-broadcast survey interval. int.4 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the second call-broadcast survey interval. NAs indicate no data recorded for that interval int.5 – Indicator variable denoting whether a Black-backed Woodpecker was encountered (1) or not encountered (0) during the third call-broadcast survey interval. NAs indicate no data recorded for that interval fa – Age of fire area (i.e., time since most recent burn) in years (range = 1–10) lat – Latitude of survey point in decimal degrees snag.ct – Number of stems counted from the survey point using a 10 basal area factor (BAF) timber cruising crutch cc – Change in percent canopy cover at the survey point based on satellite derived relativized difference normalized burn ratio score RdNBR (Miller et al. 2009. Remote Sensing of Environment 113:645–656) summarized at 8,100-m<sup>2</sup> (90 m × 90 m pixel) resolution by averaging 900-m<sup>2</sup> (30 m × 30 m pixel) values from Geographic Information System (GIS) coverages provided by the USDA Forest Service (J. D. Miller) using the raster package (http://cran.r-project.org/web/packages/raster/vignettes/Raster.pdf) in R elev.res – Residuals from a regression of survey-point elevation (m) on survey-point latitude
DOI: 10.6084/m9.figshare.3563724
title: Supplement 1. Ant species occurrence data, ant abundance data, and environmental variables for regression analysis.

description: File List tbspecies.txt -- (MD5: 26a77c828649475ba59510d0fc2452bc) tbabundance.txt -- (MD5: 06314ecd127474788b5970eadb4caa82) tbenvvars.txt -- (MD5: 1dec3e3ce91d155f0509a7709193c462) Description tbspecies.txt is a tab-delimited text file with three columns. The first row is column headings. Each row is a species occurrence in a sample. samplecode is a unique code for a sample. Note that samples that contained no ants are not in this file. To get sample sizes at each site, see Appendix A. elevation(m) is the elevation of the site, in meters, and can be used to group samples by site. species is the species name; the same names are used for the species list in Appendix B. tbabundance.txt is a tab-delimited text file with two columns. The first row is column headings. Each row is a sample and all samples are in the dataset. elevation(m) is the elevation of the site, in meters, and can be used to group samples by site. abundance is the total number of ant workers in the sample. tbenvvars.txt is a tab-delimited text file with 18 columns. The first row is column headings. Each row is a site and there are seven sites in the dataset. Elevation(m) is the elevation of the site, in meters. MeanLog(abundance+1) is the mean of Log(abundance+1) where abundance is the total number of ant workers in the sample. Mean(SpeciesDensity) is the mean of number of species per sample. Sobs(MaoTau) is the observed species richness across all samples at a site, rarefied to 1170 species occurrences at the five lowest sites. ICEMean is the Incidence-based Coverage Estimator of asymptotic species richness, rarefied to 1170 species occurrences at the five lowest sites. MDE2900 is the mid-domain effect prediction using an upper bound of 2900m, rarefied to 1170 species occurrences at the five lowest sites. MDE2050 is the mid-domain effect prediction using an upper bound of 2050m, rarefied to 1170 species occurrences at the five lowest sites. Log(Area) is the log-transformed elevation-specific regional area, estimated from a digital elevation model as the proportional area in each 100 m elevation band on the Atlantic slope of Costa Rica. Rain(mm) is estimated annual rainfall. MeanRH is estimated relative humidity. MeanTemp is mean daily average temperature. MinTemp is mean daily minimum temperature. MaxTemp is mean daily maximum temperature. SoilN is soil nitrogen level. SoilP is soil phosphorus level. AlphaMean is Fisher's Alpha diversity index, calculated using EstimateS 8.0 and rarefied to 1170 species occurrences at the five lowest sites. ShannonMean is the exponential Shannon diversity index, calculated using EstimateS 8.0 and rarefied to 1170 species occurrences at the five lowest sites. SimpsonMean is the Simpson diversity index, calculated using EstimateS 8.0 and rarefied to 1170 species occurrences at the five lowest sites.
DOI: 10.6084/m9.figshare.3563721
title: Supplement 1. R script for calculating the Raup-Crick metric as described in the text.

description: File List Raup-Crick.txt -- (MD5: c37b2472e568eae3f1c0a5f1adec3d80) Description The code included in Raup-Crick.txt allows one to perform the null model analyses described in the text. The resulting values represent the degree to which observed numbers of shared species between any two sites differ from what would have been expected by random chance given the number of species co-occurring in each of two localities, and the designated regional species pool.
DOI: 10.6084/m9.figshare.3563718
title: Supplement 1. R code for simulations of Tokeshi’s niche models.

description: File List GoFmeasures.r -- (MD5: 9ac1d2a91318218a4f471f7319e60210) Description These R functions provide a discrete algorithm to generate a realization of Tokeshi's niche models with a fixed number of species S and total abundance N. The latter also determines the total available niche space. The functions have to be given the model specifications (S, N, and k for the power fraction model) as well as one initial value b (the first niche division point); b can also be generated randomly.
DOI: 10.6084/m9.figshare.3563718.v1
title: Supplement 1. R code for simulations of Tokeshi’s niche models.

description: File List GoFmeasures.r -- (MD5: 9ac1d2a91318218a4f471f7319e60210) Description These R functions provide a discrete algorithm to generate a realization of Tokeshi's niche models with a fixed number of species S and total abundance N. The latter also determines the total available niche space. The functions have to be given the model specifications (S, N, and k for the power fraction model) as well as one initial value b (the first niche division point); b can also be generated randomly.
DOI: 10.6084/m9.figshare.3563715
title: Appendix A. Supplemental information used to quantify root biochemistry, extracellular enzyme activity, and functional gene abundance, as well as amplify fungal and bacterial DNA.

description: Supplemental information used to quantify root biochemistry, extracellular enzyme activity, and functional gene abundance, as well as amplify fungal and bacterial DNA.
DOI: 10.6084/m9.figshare.3563715.v1
title: Appendix A. Supplemental information used to quantify root biochemistry, extracellular enzyme activity, and functional gene abundance, as well as amplify fungal and bacterial DNA.

description: Supplemental information used to quantify root biochemistry, extracellular enzyme activity, and functional gene abundance, as well as amplify fungal and bacterial DNA.
DOI: 10.6084/m9.figshare.3563712
title: Appendix B. Supplemental study site information, including environmental characteristics and plant species lists of old fields and forests.

description: Supplemental study site information, including environmental characteristics and plant species lists of old fields and forests.
DOI: 10.6084/m9.figshare.3563712.v1
title: Appendix B. Supplemental study site information, including environmental characteristics and plant species lists of old fields and forests.

description: Supplemental study site information, including environmental characteristics and plant species lists of old fields and forests.
DOI: 10.6084/m9.figshare.3563706
title: Appendix C. Supplemental results of microbial community analysis and functional potential, including a summary of pseudo-F values generated from redundancy analysis and distance-based redundancy analysis from redundancy analysis, as well as heat maps illustrating changes in microbial taxonomy and functional potential across the old fields and forests.

description: Supplemental results of microbial community analysis and functional potential, including a summary of pseudo-F values generated from redundancy analysis and distance-based redundancy analysis from redundancy analysis, as well as heat maps illustrating changes in microbial taxonomy and functional potential across the old fields and forests.
DOI: 10.6084/m9.figshare.3563706.v1
title: Appendix C. Supplemental results of microbial community analysis and functional potential, including a summary of pseudo-F values generated from redundancy analysis and distance-based redundancy analysis from redundancy analysis, as well as heat maps illustrating changes in microbial taxonomy and functional potential across the old fields and forests.

description: Supplemental results of microbial community analysis and functional potential, including a summary of pseudo-F values generated from redundancy analysis and distance-based redundancy analysis from redundancy analysis, as well as heat maps illustrating changes in microbial taxonomy and functional potential across the old fields and forests.
DOI: 10.6084/m9.figshare.3563691
title: Appendix A. Crosswalk between vegetation classification units.

description: Crosswalk between vegetation classification units.
DOI: 10.6084/m9.figshare.3563691.v1
title: Appendix A. Crosswalk between vegetation classification units.

description: Crosswalk between vegetation classification units.
DOI: 10.6084/m9.figshare.3563682
title: Appendix B. List of alien species of all kinds.

description: List of alien species of all kinds.
DOI: 10.6084/m9.figshare.3563682.v1
title: Appendix B. List of alien species of all kinds.

description: List of alien species of all kinds.
DOI: 10.6084/m9.figshare.3563673
title: Appendix C. Cumulative numbers of alien and native species in analogous habitats.

description: Cumulative numbers of alien and native species in analogous habitats.
DOI: 10.6084/m9.figshare.3563673.v1
title: Appendix C. Cumulative numbers of alien and native species in analogous habitats.

description: Cumulative numbers of alien and native species in analogous habitats.
DOI: 10.6084/m9.figshare.3563664
title: Appendix A. List of publications used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.

description: List of publications used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.
DOI: 10.6084/m9.figshare.3563664.v1
title: Appendix A. List of publications used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.

description: List of publications used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.
DOI: 10.6084/m9.figshare.3563661
title: Appendix B. List of publications used in meta-analyses for soil phosphatase, labile P, and total P under elevated CO2.

description: List of publications used in meta-analyses for soil phosphatase, labile P, and total P under elevated CO2.
DOI: 10.6084/m9.figshare.3563661.v1
title: Appendix B. List of publications used in meta-analyses for soil phosphatase, labile P, and total P under elevated CO2.

description: List of publications used in meta-analyses for soil phosphatase, labile P, and total P under elevated CO2.
DOI: 10.6084/m9.figshare.3563658
title: Appendix C. The relationships of response ratio of N:P ratio (RRN:P) with that of N pool or P pool (RRNp or RRPp) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2 in different ecosystem types.

description: The relationships of response ratio of N:P ratio (RRN:P) with that of N pool or P pool (RRNp or RRPp) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2 in different ecosystem types.
DOI: 10.6084/m9.figshare.3563655
title: Appendix D. The relationships of response ratio of N:P ratio (RRN:P) with that of N concentration or P concentration (RRNc or RRPc) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2.

description: The relationships of response ratio of N:P ratio (RRN:P) with that of N concentration or P concentration (RRNc or RRPc) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2.
DOI: 10.6084/m9.figshare.3563655.v1
title: Appendix D. The relationships of response ratio of N:P ratio (RRN:P) with that of N concentration or P concentration (RRNc or RRPc) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2.

description: The relationships of response ratio of N:P ratio (RRN:P) with that of N concentration or P concentration (RRNc or RRPc) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2.
DOI: 10.6084/m9.figshare.3563649
title: Supplement 1. Data used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.

description: File List Supplement1.csv (md5: c4799953f135f95ae566e0fbff46a65e) Description Supplement1.csv<br> This database includes 2024 records (1012 paired observations) collected from 112 published articles (see Appendix A). Each record includes the source of the data, field site, ecosystem type, experimental approach, experimental CO<sub>2</sub> concentration, plant species, the plant tissues measured, N treatment, both plant N and P concentrations or pools, and N:P ratio (means and standard errors).
DOI: 10.6084/m9.figshare.3563649.v1
title: Supplement 1. Data used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.

description: File List Supplement1.csv (md5: c4799953f135f95ae566e0fbff46a65e) Description Supplement1.csv<br> This database includes 2024 records (1012 paired observations) collected from 112 published articles (see Appendix A). Each record includes the source of the data, field site, ecosystem type, experimental approach, experimental CO<sub>2</sub> concentration, plant species, the plant tissues measured, N treatment, both plant N and P concentrations or pools, and N:P ratio (means and standard errors).
DOI: 10.6084/m9.figshare.3563646
title: Supplement 2. Data used in meta-analyses for soil phosphatase, labile P, and total P under elevated CO2.

description: File List Supplement2a.csv (md5: a0b20dfc26e5fea9b85678b3003a8c9b) Supplement2b.csv (md5: 5a1c8d3f617c8e02975ff22f4efc8d41) Supplement2c.csv (md5: 425ee1370bfee92b76a9688bb2b6b303) Description Supplement2a.csv, Supplement2b.csv, Supplement2c.csv<br> This database includes three files with a total of 1168 records collected from 57 published articles (see Appendix B). All records include the reference, ecosystem type, experimental facility, experimental CO<sub>2</sub> concentration, plant species, CO<sub>2</sub> treatment, and N treatment. In addition, Supplement2a.csv includes phosphatase type and phosphatase activity (mean and standard error). Supplement2b.csv includes labile P (mean and standard error). Supplement2c.csv includes total P (mean and standard error).
DOI: 10.6084/m9.figshare.3563643
title: Appendix A. Location, altitude, ecological features, and mean and variance of floral traits for each site.

description: Location, altitude, ecological features, and mean and variance of floral traits for each site.
DOI: 10.6084/m9.figshare.3563643.v1
title: Appendix A. Location, altitude, ecological features, and mean and variance of floral traits for each site.

description: Location, altitude, ecological features, and mean and variance of floral traits for each site.
DOI: 10.6084/m9.figshare.3563637
title: Appendix B. Map of Colorado showing site details.

description: Map of Colorado showing site details.
DOI: 10.6084/m9.figshare.3563637.v1
title: Appendix B. Map of Colorado showing site details.

description: Map of Colorado showing site details.
DOI: 10.6084/m9.figshare.3563634
title: Appendix C. Pearson product moment correlations among floral traits in four Argentina anserina populations in which the floral trait-pollen receipt relationship was measured.

description: Pearson product moment correlations among floral traits in four Argentina anserina populations in which the floral trait-pollen receipt relationship was measured.
DOI: 10.6084/m9.figshare.3563634.v1
title: Appendix C. Pearson product moment correlations among floral traits in four Argentina anserina populations in which the floral trait-pollen receipt relationship was measured.

description: Pearson product moment correlations among floral traits in four Argentina anserina populations in which the floral trait-pollen receipt relationship was measured.
DOI: 10.6084/m9.figshare.3563631
title: Appendix A. Tables containing results of PCA on climate data and analyses of treatment on plant and soil nutrients, and figures showing comparison of actual and predicted monoculture yield and ΔRY, and effects of monoculture yield and home climate on per-capita biomass.

description: Tables containing results of PCA on climate data and analyses of treatment on plant and soil nutrients, and figures showing comparison of actual and predicted monoculture yield and ΔRY, and effects of monoculture yield and home climate on per-capita biomass.
DOI: 10.6084/m9.figshare.3563625
title: Appendix A. Conceptual structural equation meta-model showing hypothesized influences on the plant community.

description: Conceptual structural equation meta-model showing hypothesized influences on the plant community.
DOI: 10.6084/m9.figshare.3563631.v1
title: Appendix A. Tables containing results of PCA on climate data and analyses of treatment on plant and soil nutrients, and figures showing comparison of actual and predicted monoculture yield and ΔRY, and effects of monoculture yield and home climate on per-capita biomass.

description: Tables containing results of PCA on climate data and analyses of treatment on plant and soil nutrients, and figures showing comparison of actual and predicted monoculture yield and ΔRY, and effects of monoculture yield and home climate on per-capita biomass.
DOI: 10.6084/m9.figshare.3563625.v1
title: Appendix A. Conceptual structural equation meta-model showing hypothesized influences on the plant community.

description: Conceptual structural equation meta-model showing hypothesized influences on the plant community.
DOI: 10.6084/m9.figshare.3563622
title: Appendix B. Correlation matrix of environmental variables and plant community response variables.

description: Correlation matrix of environmental variables and plant community response variables.
DOI: 10.6084/m9.figshare.3563619
title: Appendix C. Table of AIC comparisons of alternative models for total species richness.

description: Table of AIC comparisons of alternative models for total species richness.
DOI: 10.6084/m9.figshare.3563619.v1
title: Appendix C. Table of AIC comparisons of alternative models for total species richness.

description: Table of AIC comparisons of alternative models for total species richness.
DOI: 10.6084/m9.figshare.3563616
title: Appendix D. ANOVA table for linear models including interaction terms for total species richness, richness of specialists species, and richness of generalist species.

description: ANOVA table for linear models including interaction terms for total species richness, richness of specialists species, and richness of generalist species.
DOI: 10.6084/m9.figshare.3563616.v1
title: Appendix D. ANOVA table for linear models including interaction terms for total species richness, richness of specialists species, and richness of generalist species.

description: ANOVA table for linear models including interaction terms for total species richness, richness of specialists species, and richness of generalist species.
DOI: 10.6084/m9.figshare.3563610
title: Appendix E. Master species list for Ozark dolomite glade study sites with coefficient of conservatism values.

description: Master species list for Ozark dolomite glade study sites with coefficient of conservatism values.
DOI: 10.6084/m9.figshare.3563610.v1
title: Appendix E. Master species list for Ozark dolomite glade study sites with coefficient of conservatism values.

description: Master species list for Ozark dolomite glade study sites with coefficient of conservatism values.
DOI: 10.6084/m9.figshare.3563607
title: Appendix F. Formula for proximity index.

description: Formula for proximity index.
DOI: 10.6084/m9.figshare.3563607.v1
title: Appendix F. Formula for proximity index.

description: Formula for proximity index.