cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21679421.v1
title: Supplementary Material for: Effects of a 2-year early childhood vitamin D3 intervention on tooth enamel and oral health at age 6-7 years

description: Introduction: The aim of the study was to compare the effects of a 30 µg/day vs 10 µg/day vitamin D supplementation, given during the two first years of life, on oral health at the age of six to seven years. Methods: In 2013-2016, we conducted a randomized, double-blinded, clinical trial from age 2 weeks to 2 years of daily vitamin D3 supplementation (10 vs 30 µg), including 975 healthy infants. For the present follow-up study at age 6-7 years, a sample of 123 children underwent oral examination by investigators blinded to the intervention group. Tooth enamel defect and caries findings, oral rinse active matrix metalloproteinase-8 levels, and tooth eruption were recorded. The intervention groups were compared with chi-square and Mann Whitney U tests. Associations of the oral health outcomes were evaluated with correlation analysis and logistic regression. Results: Of the children (median age 7.4 years, 51% boys), 56% belonged to the 30 µg intervention group. Developmental defect of enamel (DDE) was found in 39% of the children in the 10 µg intervention group and in 53% of the 30 µg group (p = 0.104). In total, 94% of children were vitamin D sufficient (25(OH)D ≥50 nmol/l) and 88% had caries-free teeth. No associations were found between vitamin D intervention group in infancy and oral health or the presence of DDE. Conclusion: Daily supplementation with 10 µg vitamin D3 in the Northern Hemisphere seems adequate in healthy children younger than 2 years in ensuring good oral health at early school age. Trial registration: ClinicalTrials.gov (NCT04302987)
DOI: 10.1594/pangaea.121299
title: Total carbon dioxide and alkalinity at station TT008_5-CTD9
DOI: 10.1594/pangaea.129305
title: Total organic carbon from CTD cast KIWI-6/3-4
DOI: 10.6084/m9.figshare.27923550.v1
title: Rural Immersion Dataset 1.xlsx

description: The file contains data set for the study titled "Field (Rural) Immersion as pedagogical tool to enhance general self-efficacy of business students"
DOI: 10.6084/m9.figshare.7203029.v1
title: Data set

description: Data sheet on attentional control theory<br>
DOI: 10.1594/pangaea.121284
title: Total carbon dioxide and alkalinity at station TT008_5-CTD51
DOI: 10.1594/pangaea.121301
title: Total carbon dioxide and alkalinity at station TT008_6-CTD65
DOI: 10.1594/pangaea.120923
title: Partial pressure of CO2 in water, along ship track of cruise TT011
DOI: 10.1594/pangaea.129315
title: Total organic carbon from CTD cast KIWI-8/3-9
DOI: 10.6084/m9.figshare.13537196.v1
title: Epigenetic Clock Coefficients

description: This Excel file contains coefficients for predicting the age of 26 species of bats from DNA methylation values obtained from DNA extracted from wing punches and then profiled using an Illumina mammalian methylation array. The array design is available from the Gene Expression Omnibus (GEO) at NCBI as platform GPL28271
DOI: 10.6084/m9.figshare.15439980.v2
title: FuzzyPPI: Human Proteome at Fuzzy Semantic Space

description: Large scale protein-protein interaction (PPI) network of an organism provides key insights into the cellular and molecular functionalities, signaling pathways and underlying disease mechanisms. If we consider the complete interactome of any given organism, the total number of unexplored protein interactions significantly outnumbers the known positive and negative interactions. For Human 20,350 reviewed proteins can generate over ~207 million potential interactions. However, the combination of all known PPI datasets, contains only ~5.6 million positive and ~758k negative protein-protein interactions (NPPI), that together is ~3.1% what is more, conventional PPI prediction methods produce binary results. At the same time recent studies show that protein binding affinities may prove to be effective in detecting protein complexes, disease association analysis, signaling network reconstruction, <i>etc.</i> In this work we present a fuzzy semantic scoring function using the Gene Ontology (GO) graphs to assess the binding affinity between any two proteins at an organism level. We have implemented a distributed algorithm in Apache Spark that computes this function and processed the complete Human PPI network of ~182 million potential interactions resulting from 19,106 reviewed proteins for which GO annotations are available. The quality of the computed scores has been validated with respect to the available <i>state-of-the-art</i> methods on benchmark data sets.
DOI: 10.6084/m9.figshare.28943780.v1
title: <b>Evolution of the East Asian Summer Monsoon in the Songnen Plain Revealed by Loess Chroma and Magnetic Susceptibility in Harbin Since 195 ka</b>

description: This document contains details on (1) Magnetization, chromaticity and reconstructed mean annual precipitation (MAP) and mean annual temperature (MAT) of Huangshan section(Table 1). (2) Magnetization, chromaticity, MAP, MAT and longitude and latitude of the sandy land sampling point(Table 2). (3) Fig. S1 is the correlation heat map analysis of various indicators of loess in Harbin(Fig. S1). (4) Fig. S2 shows a comparison of magnetic susceptibility between Harbin loess, Xifeng loess, and Luochuan loess (Fig. S2).
DOI: 10.1594/pangaea.116098
title: Total carbon dioxide and total alkalinity at station TT043_6-1
DOI: 10.6084/m9.figshare.16825570.v1
title: pupillometric_and_RT_data.csv

description: Here you can find the data related to paper manuscript entitled <b>Choice under conflict: relating pupil dilation and the deliberately explorative choices in the probabilistic learning task</b>.<br>This dataframe contains the data after filtering and z-scoring. Each row represents single trial.<br><b>Variable description:</b>fname - subject codetime - time of trial startblock - serial block number text - full event codeRT - response time before Z-transformationrisk - TRUE and FALSE - disadvantageous and advantageous choice respectively rew - TRUE and FALSE - gain and loss in current trial respectivelylearning - TRUE and FALSE - trials during learning and without learning trained - TRUE and FALSE - trials after learning criteria reached and all other respectivelyscheme - type of reinforcement schemetrial_type_seq - choice type for uninterrupted sequences place - place of experiment (inside or outside MEG chamber)feedback_cur - cur_rew and cur_lose - gain and loss in current trial feedback_prev - prev_rew and prev_lose - gain and loss in previous trial RT_Z - Z-scored RT trial_type4 - Choice type<br> BL_fix_m300 - mean pre-trial pupil size <br>from V_m1999_m1950 to V_2951_3000 - pupil size averaged within 50-ms intervals (0 ms-response, m-minus)<br>resp_m299_0, resp_m399_2200 etc - pupil size averaged within particular intervals<br> <br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.16929427.v4
title: China global Merged surface temperature 2.0 during 1850-2020

description: The China global Merged Surface Temperature (China-MST) was created by merging the China-Land Surface Air Temperature 2.0 (China-LSAT2.0) with sea surface temperature (SST) data from the Extended Reconstructed Sea Surface Temperature version 5 (ERSSTv5). The latest version China-MST2.0 datasets consist of four datasets: China-MST2.0-Nrec, China-MST-Interim, China-MST2.0-Imax, and China-MST2.0-Imin.
DOI: 10.6084/m9.figshare.19715029.v4
title: code from SpaceFold paper

description: jupyter notebooks and R code and dataset related to the SpaceFold paper. <br> <strong>BayesPrism_outs.zip </strong>: output from BayesPrism. performed a single run of BayesPrism on each tissue by combining two Visium replicates. sig.rdata: run using signature genes. full.rdata: run using full genes (after a mild selection for expressed genes). <br> <strong>SpaceRanger_outs.zip:</strong> raw output from the Space Ranger. Note that bam files were excluded to reduce the file size. All other files outputed by Space Ranger were included. <br> <strong>features.tsv.gz : </strong>gene annotation from Space Ranger. <br> <strong>SI_adata_paper.h5ad</strong> and <strong>LI_adata_paper.h5ad</strong> : scanpy-processed single cell data from mouse small and large intestine. The cell state column was used for devonvolution. Note that the raw reads were cell-bender corrected reads, which may differ from the cell ranger ouput from GEO. <br> <strong>SI_clustering_paper.ipynb</strong> and <strong>LI_clustering_paper.ipynb</strong>: jupyter notebook for processing the scRNA-seq. <br>
DOI: 10.6084/m9.figshare.26632090.v1
title: Additional file 1 of Predicting the distribution of Ixodes ricinus and Dermacentor reticulatus in Europe: a comparison of climate niche modelling approaches

description: Additional file 1: Dataset S1. Species occurrence data for Ixodes ricinus and Dermacentor reticulatus used for model training (prior to thinning).
DOI: 10.1594/pangaea.121253
title: Total carbon dioxide and alkalinity at station TT008_5-CTD20
DOI: 10.1594/pangaea.121332
title: Total carbon dioxide and alkalinity at station TT012_5-CTD63
DOI: 10.17632/423whct5hx
title: Incidence of dermatofibrosarcoma protuberans stratified by age group and sex, 2000-2018

description: Mean change in the incidence of dermartofibrosarcoma protuberans stratified by age group and sex between 2000 to 2018
DOI: 10.17632/rh3hrp4pnj
title: Music and Animal Basic Emotions

description: The dataset includes sound files for music and animal basic emotions
DOI: 10.6084/m9.figshare.14828916.v1
title: GrantPeerReview_Scoring_Ranking_DataA1

description: Scoring and ranking data from peer review of biomedical research funding applications in 2020. Proposals were reviewed by 2 individual reviewers before the meeting, and then by a panel of experts at the meeting, who then scored each proposal after discussion on a scale of 1.0 to 5.0 (1 is the most meritorious). Then, after all proposals have been discussed, reviewers can look at the list of proposals (only those without conflicts) and their scores and then rank their top six proposals on the panel. Scoring and ranking data per proposal and per reviewer are represented, as well as the individual pre-meeting assignments, pre-meeting scores and any conflicts of interest. Panel scores should be present for every reviewer unless they had a conflict or in some instances were not present during the discussion.
DOI: 10.6084/m9.figshare.28677218.v1
title: Exploring the Complexities of Gender-Based Violence in South Africa: A Comprehensive Analysis

description: In present times, gender-based violence (GBV) is a global scourge. It is highly prevalent in South Africa, where the rates of incidents are exorbitant, particularly those of sexual violence against women. The goal of this paper is to explore the implications of factors such as societal norms affected by the country’s unique historical circumstances that promote rising rates of gender-based violence, significant underreporting of these instances, sexual violence and the consequences for the survivors. The paper uses secondary data to study the intersectionality of gender, population group (race), socio-economic status, and geographical location. We further analyze the sociodemographic of GBV (particularly rape) victims and perpetrators to put the focus on better and more gender-responsive prevention strategies. The paper highlights the importance of paying attention to intimate partner violence (IPV) as this constitutes a highly significant percentage of the total cases of rape and femicide. The study shows that non-white women constitute the most vulnerable group to GBV. We conclude that proper mechanisms must be put in place which require the cooperation of the police, judicial, medical, social and other support services to properly tackle this violence which must account for every population group, especially the historically marginalized ones.<b>Citation: </b>Alvarez Merino, E., & Afa, I. J. (2025). Exploring the Complexities of Gender-Based Violence in South Africa: A Comprehensive Analysis. International Journal of Humanities and Social Science, 15, 26-38. https://doi.org/10.1080/ijhss.v15p3<b>URL: </b>https://ijhssnet.com/journal/index/5011
DOI: 10.1594/pangaea.116080
title: Total carbon dioxide and total alkalinity at station TT043_26-1
DOI: 10.1594/pangaea.116210
title: Total carbon dioxide and total alkalinity at station TT049_5-4
DOI: 10.17632/75v2xxrb39
title: FFA-QLI-BRA

description: The Brazilian portuguese version of the instrument FFA-QLI.
DOI: 10.1594/pangaea.116188
title: Total carbon dioxide and total alkalinity at station TT049_27-2
DOI: 10.1594/pangaea.116209
title: Total carbon dioxide and total alkalinity at station TT049_5-2
DOI: 10.17632/r28zsg5jr3
title: Data for Micro Fluidized Beds with air

description: This data presents MATLAB scripts and data in order to reproduce the figures and videos obtained for the article "Miniaturized gas-solid fluidized beds"
DOI: 10.1594/pangaea.116078
title: Total carbon dioxide and total alkalinity at station TT043_25-1
DOI: 10.1594/pangaea.116088
title: Total carbon dioxide and total alkalinity at station TT043_28-20
DOI: 10.17632/m23y6ryhv7
title: Supplementary Table 1 for Special editorial: When prescribing Janus kinase inhibitors for dermatologic conditions, be mindful of the Food and Drug Administration’s September 1,2021, data safety communication

description: Supplementary Table 1 for Special editorial: When prescribing Janus kinase inhibitors for dermatologic conditions, be mindful of the Food and Drug Administration’s September 1,2021, data safety communication.
DOI: 10.6084/m9.figshare.10025006.v1
title: Accurately estimating global wheat yields at 4-km resolution during 1982-2020 (GlobalWheatYield4km)

description: This dataset offers annual time series data of 4km-grid yield estimates of spring and winter wheat worldwide for the period 1982-2020. *** The data file is in “.tif" format *** Temporal Resolution: Yearly *** Temporal coverage: 1982-2020 *** Pixel size: 4 km *** Pixel value: Yield of wheat (kg/ha) *** Projection information: EPSG: 3395
DOI: 10.6084/m9.figshare.14307365.v1
title: Alkali-silica reaction (ASR) - Investigation of crystallographic parameters of natural sands by backscattered electron diffraction

description: abstract: This study involved analyzing several natural sands to ascertain the possible causes for distress due to ASR. The analyses were performed using the following techniques: X-ray diffractometry, accelerated mortar bar tests (AMBT), electron backscattering diffraction and elementary chemistry analyses, by FEG-SEM/EBSD/EDS. These experiments allowed identifying the presence of several mineral composites (such as microcline, anorthite, among others), as well as the microstructural-crystallographic planes of quartz (such as the Dauphiné type). From the results it could be inferred that the multiple techniques used, especially the FEG-SEM / EBSD, proved to be promising in the analysis of the ASR potential of sands for use in Portland cement mortars and concretes.
DOI: 10.6084/m9.figshare.3824250.v5
title: Data summary for paper "Individual differences in internal noise are consistent across two measurement techniques"

description: The data used in the 'Individual differences in internal noise are consistent across two measurement techniques' paper by Vilidaite & Baker (Vision Research).
DOI: 10.1594/pangaea.116179
title: Total carbon dioxide and total alkalinity at station TT049_21-3
DOI: 10.1594/pangaea.116214
title: Total carbon dioxide and total alkalinity at station TT049_7-25
DOI: 10.6084/m9.figshare.15086883.v1
title: Survival and growth of Scots pine (<i>Pinus sylvestris)</i> seedlings in north Sweden: effects of planting position and arginine phosphate addition

description: Forest regeneration by tree planting on harvested sites in the boreal forests of northern Europe is frequently preceded by site preparation to increase survival and growth of the seedlings. We studied whether a small addition of arginine phosphate (AP treatment) at the time of planting would further enhance the seedlings’ early performance. Following two growth seasons, we investigated survival and growth of Scots pine (<i>Pinus sylvestris)</i> seedlings on 11 locations between latitudes 61.1°N and 67.1°N in the boreal forest of northern Sweden. The planting positions of seedlings were on capped mounds and bare mineral soil following mechanical site preparation, and in non-prepared soil. We found that seedling survival following site preparation increased with AP treatment. On capped mounds, seedling survival was more variable and appeared more dependent on precipitation during the first month after planting than seedlings positioned in the mineral soil. The positive effect of AP treatment on seedling growth differed between sites and was more pronounced on sites with longer growing seasons. AP treatment had no significant effect on survival of seedlings planted in non-prepared soil, while the positive effect on growth was more pronounced at sites with higher fertility using this planting position.
DOI: 10.6084/m9.figshare.16897063.v1
title: December 2020 Covid-19 Twitter Streaming Dataset

description: The file contains Tweet IDs* for COVID-19 related tweets collected in <b>December, 2020</b> from <b>Twitter's COVID-19 Streaming Endpoint </b>via a custom script developed by the <b>Social Media Lab (https://socialmedialab.ca/)</b>.<br>Visit <b>our interactive dashboard at https://stream.covid19misinfo.org</b>/ for a preview and some general stats about this COVID-19 Twitter streaming dataset.<br>For more info about <b>Twitter's COVID-19 Streaming Endpoint</b>, visit <b>https://developer.twitter.com/en/docs/labs/covid19-stream/overview</b><br><b>Note</b>: In accordance with Twitter API Terms, the dataset only includes Tweet IDs (as opposed to the actual tweets and associated metadata). To recollect tweets contained in this dataset, you can use programs such as Hydrator (https://github.com/DocNow/hydrator/) or the Python library Twarc (https://github.com/DocNow/twarc/).
DOI: 10.6084/m9.figshare.27188580.v1
title: Laboratory Log: <b>Lack of strong evidence for cone photoreceptors’ contribution to human melatonin suppression and alerting response to light</b>

description: This log provides a timeline of all study sessions, documenting when data were collected.
DOI: 10.1594/pangaea.116061
title: Total carbon dioxide and total alkalinity at station TT043_17-25
DOI: 10.1594/pangaea.854806
title: Results of Closed-Flow Column Experiments (zip-archive 2.3 MB)

description: The identification of transport parameters by inverse modeling often suffers from equifinality or parameter correlation when models are fitted to observations of the solute breakthrough in column outflow experiments. This parameters uncertainty can be approached by the application of multiple experimental designs such as column experiments in open-flow mode and the recently proposed closed-flow mode. Latter are characterized by the recirculation of the column effluent into the solution supply vessel that feeds the inflow. Depending on the experimental conditions, the solute concentration in the solution supply vessel and the effluent follows a damped sinusoidal oscillation. As a result, the closed-flow experiment provides additional observables in the breakthrough curve. The evaluation of these emergent features allows intrinsic control over boundary conditions and impacts the uncertainty of parameters in inverse modeling. We present a comprehensive sensitivity analysis to illustrate the potential application of closed-flow experiments. We show that the sensitivity with respect to the apparent dispersion can be controlled by the experimenter leading to a decrease in parameter uncertainty as compared to classical experiments by an order of magnitude for optimal settings. With these finding we are also able to reduce the equifinality found for situations, where rate-limited interactions impede a proper determination of the apparent dispersion and rate coefficients. Furthermore, we show the expected breakthrough curve for equilibrium and kinetic sorption, the latter showing strong similarities to the behavior found for completely mixed batch reactor experiments. This renders the closed-flow mode a useful complementary approach to classical column experiments.
description: Supplement to: Ritschel, Thomas; Totsche, Kai-Uwe (2016): Closed-flow column experiments: A numerical sensitivity analysis of reactive transport and parameter uncertainty. Water Resources Research, 52(8), 6094-6110
DOI: 10.17632/bgmg4rd2nw
title: Whole-genome sequences shed light onto the demographic history and contemporaneous genetic erosion of free-ranging jaguar (Panthera onca) populations

description: Abstract: The vast amount of data contained in a single genome represents a detailed record of past events in that lineage and may forecast its evolutionary potential in the face of environmental changes. Here we employed whole-genome sequence (WGS) data to infer the demographic history and assess signals of recent inbreeding in an apex mammalian predator. We analyzed 13 jaguar ( Panthera onca ) whole genomes from individuals sampled in seven different biomes across the species’ range, including its northernmost extreme in the Mexico/USA border region. We used the pairwise sequentially Markovian coalescent (PSMC) method and screened the genomes for long runs of homozygosity (ROH) to characterize jaguar demographic history and detect signals of contemporary inbreeding. PSMC plots were consistent among individuals, suggesting that the jaguar lineage had an effective population size of up 100,000 individuals ca. 1 million years ago, then declined and rebounded during the Late Pleistocene, followed by a more recent decrease spanning the last 40,000 years. This recent decline was more pronounced in the North/Central American genomes, likely reflecting population bottlenecks during the south-north colonization towards the edge of the species’ current range. The ROH analysis revealed a relatively small burden for most jaguars, indicating a recent history of outbreeding and large-scale connectivity among regional populations. However, northern range-edge individuals and those from severely fragmented populations exhibited signals of inbreeding, and potentially recent bottlenecks, which indicates that this should be the focus of future in-depth research. Overall, our study illustrates the power of WGS data to survey and monitor genetic erosion in large carnivores triggered by anthropogenic habitat loss and fragmentation. Keywords: historical effective population size; runs of homozygosity; inbreeding; Felidae; carnivore conservation File 1: psmcfa file (bPon.jaguar_pantanal.noAmb.noX.zip) File 2: vcf file (jaguarGenomes.chrNum.bial.sorted.minQ20.noMiss.IDlabel.vcf.gz)
DOI: 10.17632/hv4mk6bvxz
title: Data set for Individualizing training study- Endurance Performance

description: This data set is related to the analysis of endurance performance (Vmax, time limit at Vmax, and 5 km time trial) from pre to post-training intervention regarding 3 different approaches; HRV-guided training, DALDA-guided training and predefined training
DOI: 10.6084/m9.figshare.14096915.v1
title: intfinder_db

description: https://cge.food.dtu.dk/services/IntFinder-1.0/ IntFinder database expanded to detect integron classes 1, 2, and 3. <br> Tool: <br> Software: https://bitbucket.org/genomicepidemiology/intfinder/src/master/<br> <br> Database https://bitbucket.org/genomicepidemiology/intfinder_db/src/master/<br>
DOI: 10.6084/m9.figshare.19235217.v1
title: Regeneration test of co-crystal ligands of PHGDH

description: To validate the screening accuracy of SECSE, we performed a test to reproduce experimental binding modes for co-crystal ligands against PHGDH. This dataset contains all relevant files and results of this test.