cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16912146
title: Dataset related to article: Anti-GAD65 musicogenic epilepsy: Bilateral and independent mesial temporal seizures revealed by foramen ovale electrodes

description: FIGURE 1-2
DOI: 10.15468/dl.pmeqvg
title: Occurrence Download

description: A dataset containing 16389210 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" 
FROM occurrence 
WHERE 
 ("hasgeospatialissues" = 'false') AND 
 ("hascoordinate" = 'true') AND 
 ("occurrencestatus" = 'PRESENT') AND 
 NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND 
 ("decimallatitude" &gt;= -90) AND 
 ("decimallatitude" &lt; 28) AND 
 ("decimallongitude" &gt;= -83) AND 
 ("decimallongitude" &lt; -82) AND 
 ("year" &lt;= 2025)

 The dataset's 16389210 records were derived from 1294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003816-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7n8cye
title: Occurrence Download

description: A dataset containing 16991198 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" 
FROM occurrence 
WHERE 
 ("hasgeospatialissues" = 'false') AND 
 ("hascoordinate" = 'true') AND 
 ("occurrencestatus" = 'PRESENT') AND 
 NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND 
 ("decimallatitude" &gt;= 28) AND 
 ("decimallatitude" &lt; 36) AND 
 ("decimallongitude" &gt;= -83) AND 
 ("decimallongitude" &lt; -82) AND 
 ("year" &lt;= 2025)

 The dataset's 16991198 records were derived from 904 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003815-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/mg3pw5mmd8
title: The spatial transcriptomic pattern analyses of human embryonic tooth development during cap to early bell stage

description: The spatial transcriptomic sequencing and single-nuclei RNA sequencing (snRNA-seq) on human embryonic tooth germ sourced from healthy aborted specimens from the cap-to-early bell stage (post-conception weeks 12 to 18).
DOI: 10.6084/m9.figshare.20456460.v1
title: Biomechanical effects of the addition of a precision constraint on a collective load carriage task

description: The Readme file contains all the information necessary to understand dataset
DOI: 10.6084/m9.figshare.28380914.v1
title: Gut Microbiota Dysbiosis Exacerbates Heart Failure via the LPS-TLR4/NF-κB Signaling Axis: Mechanistic Insights and Therapeutic Potential of TLR4 Inhibition

description: Gut Microbiota Dysbiosis Exacerbates Heart Failure via the LPS-TLR4/NF-κB Signaling Axis: Mechanistic Insights and Therapeutic Potential of TLR4 Inhibition
DOI: 10.6084/m9.figshare.878460.v2
title: khmer-protocols 0.8.4 documentation

description: This is a set of protocols for doing genomic data analysis – specifically, de novo mRNAseq assembly and de novo metagenome assembly – in the cloud. The latest released version of these protocols is v0.8.4; please follow the instructions at the following URL, and use this URL in citations and discussions: https://khmer-protocols.readthedocs.org/en/v0.8.4/
DOI: 10.6084/m9.figshare.9870929.v1
title: Production and characterization of metallic Cu-Sn alloy coatings in electrolytic bath containing glycine: preliminary exp

description: ABSTRACT The problems related to corrosion are frequent and may occur in many areas, such as the chemical, petrochemical, naval, civil construction and automobile industries, among other productive sectors. Therefore, corrosion prevention methods should be employed to avoid loss of materials and the use of metallic coatings has served well for this purpose. The production of metallic coatings allows a modification on the substrate surface leading to the formation of a functional material that presents the desired properties and characteristics, in this case, corrosion resistance. However, these coatings are generally produced using toxic cyanide-based baths, which increases the cost of the process due to further treatment of the generated wastes. The present work proposes an initial study aiming at producing of Cu-Sn alloy coatings, with anticorrosive properties, originated from a less aggressive electrolytic bath, presenting different copper and tin ionic concentrations. The coatings were electrodeposited on carbon steel substrate using an acidic electrolyte containing CuCl2, SnCl2 and glycine. These coatings were further characterized by scanning electron microscopy (SEM), X-ray spectroscopy energy dispersive (EDS), electrochemical impedance spectroscopy (EIS) and potentiodynamic polarization. The results of EIS showed that the films produced with higher copper contents presented an increase in the values of the charge transfer resistance (Rct). However, the polarization experiments showed that these films did not act as protective coatings. The morphological analysis evidenced the formation of porous coatings, which may explain their poor electrochemical behavior.
DOI: 10.17632/tk4fkswtj5
title: Phish-Iris Dataset: A Small Scale Multi-Class Phishing Web Page Screenshots Dataset

description: Phish-IRIS dataset is aimed for researchers to supply a ground truth dataset to evaluate their vision based multi-class anti-phishing studies. For this purpose, we supply a corpus involving unique screenshots of 15 (14+1) classes. Here, 1 class represents the "unknown" or "legitimate" samples while the rest of the 14 classes correspond to different highly phished brands. It is important to mention that, Phish-IRIS dataset aims to provide a benchmark dataset for only computer vision based anti-phishing studies. The dataset has been collected between March and May 2018. The phishing pages have been collected from Phishtank.com and OpenPhish.com while legitimate pages have been collected randomly. Our dataset involves 1313 training and 1539 testing samples. The directory structure of the dataset has been splitted as "train" and "val" folders which contain respective brand names and "other" category. Since the nature of the anti-phishing is based on discriminating legitimate web pages from the phished targets, we also provided a fairly larger set for legitimate samples (i.e. "other" category). Our first paper utilizing this dataset has been published with the title of Phish-IRIS: A New Approach for Vision Based Brand Prediction of Phishing Web Pages via Compact Visual Descriptors. The official home page of the dataset is https://web.cs.hacettepe.edu.tr/~selman/phish-iris-dataset/ We believe that, our dataset will be beneficial for the researchers who are interested in vision based anti phishing .
DOI: 10.6084/m9.figshare.21972653.v1
title: CNN_MJO

description: <br> - Input 1. Precipitable Water 2. Outgoing Longwave Radiation 3. Zonal wind at 850hPa 4. Zonal wind at 250hPa 5. Surface Temperature - Output Realtime Multivariate MJO indices (RMM1 and RMM2) <br> <code></code>
DOI: 10.6084/m9.figshare.25765398.v1
title: emolecules accessed on 2019-11-01

description: This is the in-stock molecule library from eMolecule accessed on 2019-11-01.
DOI: 10.6084/m9.figshare.8246564.v1
title: Additional file 2: of Comparative transcriptomic and proteomic analysis of yellow shell and black shell pearl oysters, Pinctada fucata martensii

description: All differential unigenes compared T02 (Y) with T01 (B). There are 10,557 differential unigenes including 612 significant differentially expressed genes (DEGs). (XLS 5782 kb)
DOI: 10.17632/w25bzstpmp
title: POS - A 1D time-dependent H+ ion source code

description: Abstract The code POS is based on the first three velocity moment's expansion of the transport equation, as derived in Braginskii's theory for two fully ionized fluids, H^+and e. The theory requires the solution of four (plasma density, drift velocity, electron and ion temperatures) coupled, time-dependent equations. These equations have been solved in one spatial dimension using the method of moving finite elements. Title of program: POS Catalogue Id: ABJU_v1_0 Nature of problem POS is a computer program that predicts the number densities, drift velocities, and electron and ion temperatures of two fluids, e and H+, in a volume ion source, including the effect of a magnetic filter field. Versions of this program held in the CPC repository in Mendeley Data ABJU_v1_0; POS; 10.1016/0010-4655(89)90135-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.11955612.v2
title: Elastic Chains: Data and code

description: Data used in the figures in a paper "Dynamics of a long chain in turbulent flows: Impact of vortices," by <br> J. R. Picardo, R. Singh, <strong>Samriddhi Sankar Ray</strong>, and D. Vincenzi. <br> <strong>Philosophical Transactions of the Royal Society A</strong> (<em>in press);</em> ArXiv: 1912.11431.<br>Please read the ReadMe file for help with the use of this data set.
DOI: 10.6084/m9.figshare.16871878.v1
title: Covid_News.csv

description: Track and monitor Covid-19 related news from the world.
DOI: 10.6084/m9.figshare.29037146.v1
title: Raman-ChEMBL-part2-db

description: Raman-ChEMBL-part2-db
DOI: 10.6084/m9.figshare.7834808.v1
title: Draw a Person Test Results

description: The Draw-A-Person Intellectual Ability Test for Children, Adolescents, and Adults (DAP: IQ; Reynolds & Hickman, 2004) was used. The DAP: IQ is a quick screening version of a test typically used to estimate IQ (Goodenough, 1926). It was designed to be used with children through adults ranging in age from 4 to 89 years and can be individually or group administered (Williams, Fall, Eaves, & Woods-Groves, 2006). A number of studies have suggested that it may also be a useful screening tool for fine motor movements (Rehrig & Stromswold, 2018). The present study utilized it in this way - as an assessment of motor drawing skills, specifically drawing of self. Using official DAP drawing sheet and pencil, participants were instructed to draw a full-body, frontal-view of themselves, while avoiding cartoonish or stick figure representations. However, they were told that their work would not be evaluated on drawing skill so as to alleviate performance anxiety. Participants were given 10 min to complete the task, with a 1-2 min extension, if necessary. Because EEG was simultaneously recorded, participants were instructed to relax and minimize head and body movements. The QSS (quantitative scoring system) was utilized to evaluate the DAP drawings. This system analyzes fourteen different aspects of the drawings (such as specific body parts and clothing) for various criteria, including presence or absence, detail, and proportion. Goodenough's original scale had 46 scoring items for each drawing, with 5 bonus items for drawings in profile (Goodenough, 1926). A more recent version was used that uses 64 scoring items for each drawing (Reynolds & Hickman, 2004). A separate standard score is recorded for each drawing.<br>
DOI: 10.6084/m9.figshare.12780116.v3
title: Rice Milling

description: Case study: small-scale rice mills, is it effective<br>
DOI: 10.6084/m9.figshare.26808418.v1
title: <b>A multi-tissue atlas of allelic specific expression in cattle</b>

description: Allele-specific expression (ASE) analysis is a valuable tool for validating expression quantitative trait loci (eQTLs), identifying causal variants associated with complex traits, and exploring the genetic mechanisms underlying heterosis. However, few studies have investigated the connections between these elements. In this study, we characterized ASE variants across 35 tissues using 7,532 publicly available RNA-seq datasets and found that ASE variants exhibited stronger tissue specificity and lower reproducibility compared to eQTLs. Interestingly, ASE variants with opposite directional effects showed greater resilience across diverse environments. Functional annotation with epigenomic data revealed that ASE variants were mainly located in enhancer regions and implicated in post-transcriptional and translational processes. Our analysis of eQTLs, splicing QTLs (sQTLs), and QTLs associated with milk-related traits in Holstein cattle, combined with enrichment analysis and effect size evaluation, showed that ASE variants were more strongly associated with dominant effects than additive effects, particularly in reproductive and immune-related tissues/traits, which exhibited higher heterosis. These findings enhance our understanding of the genetic mechanisms underlying heterosis and ASE and provide valuable regulatory variants that can be used to improve economic traits through molecular breeding or strategic exploitation of heterosis in cattle.
DOI: 10.6084/m9.figshare.29083361.v1
title: 1- All data.xlsx

description: Raw data used to develop ML models
DOI: 10.6084/m9.figshare.6189386.v1
title: Beta2 for the climate space weighted regressions

description: Spatialized monthly values for the LST day sensitivity (beta2) term of the climate space weighted regression (CSWR).
DOI: 10.17632/dxds65xr3z
title: Data for: Autistic Traits in Individuals Self-defining as Transgender or Non-binary

description: Data set investigating ASD traits in transgender and nonbinary individuals
DOI: 10.6084/m9.figshare.26931856.v3
title: Sub-Index: Ecosystem Services

description: The ecosystem services sub-index captured two key ecosystem services that forests provide – (1) the provisioning of clean drinking water, and (2) carbon storage. This sub-index identifies areas where wildfire may negatively impact the capacity of forests to provide these services. Values in this layer represent 10 quantiles (1 being lowest value for the provisioning of ecosystem services, 10 being the highest), which were scaled relative to values within each U.S. Forest Service region.For full details, please see: Lacey LM, Suraci JP, Littlefield CE, Busse BS, Dickson BG. 2024. Informing proactive wildfire management that benefits vulnerable communities and ecological values.<i> People and Nature.</i>
DOI: 10.6084/m9.figshare.7841426.v1
title: Supplemental material for Androga et al. 2019 Anaerobe

description: Supplemental material for Androga et al. 2019 Anaerobe comprising annotated assemblies for 53 Clostridium difficile strains<br>
DOI: 10.17632/75z877rdp3
title: Deposition, diagenesis and reservoir quality of an Oligocene reefal-margin limestone succession: Asmari Formation, United Arab Emirates

description: The package in Mendeley Data contains data and supplementary material related to the article "Deposition, diagenesis and reservoir quality of an Oligocene reefal-margin limestone succession: Asmari Formation, United Arab Emirates" by S.N. Ehrenberg and H. Baek, revised version submitted to Sedimentary Geology on 12 September 2019).
DOI: 10.17632/jc429yh4fv
title: Long read transcriptome and Differentially expressed genes between sexs of juvenile / adult mud crabs

description: We hypothsized that SMRT sequencing producing long length reads may provide more conprehensive transcriptome and accurate downstream analysis than next generation sequencing. Here we annotated the unigenes of the long length transcriptome and analysis the DEGs. We found that DEGs were present between sexes during early developmental stages of the mud crab. Several important KEGG pathways were identified to be potentially involved in sex differention File S1: Unigene annotation in five protein database including non-redundant protein database (NR), Swiss-prot, Clusters of orthologous eucaryotic genes (KOG), Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomics (KEGG) databases ; File S2: Predicted simple sequence repeats （SSRs）in the long read transcriptome of mud crab; File S3: Differentially expressed genes (DEGs) between juvenile male (CM) and juvenile female (CF) crabs; File S4: Differentially expressed genes (DEGs) between adult male (AM) and juvenile female (AF) crabs; File S5: Enriched KEGG pathway analysis of the DEGs between juvenile male (CM) and juvenile female (CF) crabs； File S6: Enriched KEGG pathway analysis of the DEGs between adult male (AM) and juvenile female (AF) crabs.
DOI: 10.6084/m9.figshare.27100453.v3
title: Genome annotation of <i>Reticulitermes speratus</i>

description: Gene prediction was conducted on the GenBank Reticulitermes speratus genome (GCA_021186555.1), resulting in the generation of the gene annotation file (Rsperatus.annotation.gff) and the protein sequence file. Additionally, a GFF3 file was compiled for genes located on the 21 longest chromosomes, with AED scores of 0.5 or lower (Rsperatus.annotation_AED05_21.gff3).
DOI: 10.17632/5285sr42x3
title: Data Click Unicorn

description: From Clicks to Unicorns DATA
DOI: 10.17632/pspv9z9g4t
title: Data for: Potassium and oxygen isotope evidence for formation of early continental crust from seawater-hydrothermally altered oceanic crust

description: Raw data for the manuscript by Zhang et al. to be published by Geochimica et Cosmochimica Acta as "Formation of early continental crust by remelting of altered oceanic crust in convergent margins: evidence from whole-rock K and zircon O isotopes".
DOI: 10.17632/scnp36wvgr
title: Cryo-electron tomography reveals the multiplex anatomy of condensed native chromatin and its unfolding by histone citrullination

description: Fig. 1 A
Agarose gel shows DNA of native chromatin isolated from K562 cells and fractionated by ultracentrifugation of sucrose gradients (lanes 1-13), DNA size markers (lane 14 (M)), and total soluble chromatin (lane S2). 

Fig. 1 C
DNP agarose gel showing native electrophoresis of the K562 chromatin crosslinked by glutaraldehyde at the indicated concentration of Mg2+ (lanes 2 – 8). Lane 1 (M): DNA size markers.

Fig. 1 D (0 mM)
TEM of the K562 chromatin crosslinked by glutaraldehyde at 0 mM Mg2+
Fig. 1
D (0.75 mM)
TEM of the K562 chromatin crosslinked by glutaraldehyde at 0.75 mM Mg2+ 

Fig. 1 D (1.25 mM)
TEM of the K562 chromatin crosslinked by glutaraldehyde at 1.25 mM Mg2+. 

Fig. 1 D (2.0 mM)
TEM of the K562 chromatin crosslinked by glutaraldehyde at 2.0 mM Mg2+. 

Fig. 5 A (1-4)
18% SDS-PAGE gel stained by Coomassie R250 shows histones of control (lanes 1) and PAD4-treated (lanes 2, 3) nucleosome arrays from K562 cells. Lane 4: molecular mass markers. 

Fig. 5 A (5-7)
SDS-PAGE and Western blotting of histones from control (lane 5) and PAD4-treated (lanes 2, 3) nucleosome arrays detected by antibodies against histone H3 citrullinated at Arginine 2, 8, and 17

Fig. 5 A (8-9)
Triton-Acetate-Urea gel stained by Coomassie R250 shows histones extracted from control (lane 8) and PAD4-treated (lanes 9) nucleosome arrays from K562 cells.

Fig. 5 B
DNP agarose gel showing DNA size markers (lane 1) and native electrophoresis of the control (lanes 2-8) and PAD4-treated (lanes 9-15) nucleosome arrays from K562 cells.

Fig. 6 A (1-5)
18% SDS-PAGE gel stained by Coomassie R250 shows histones of control (lanes 1, 3) and PAD4-treated (lanes 2, 4) reconstituted nucleosome core arrays. M – m.w. markers (lane 5). 

Fig. 6 A (6-10)
Lanes 6-10: 18% SDS-PAGE gel stained by Coomassie R250 shows histones of control (lanes 7, 9) and PAD4-treated (lanes 8, 10) reconstituted nucleosome arrays additionally reconstituted with linker histone H1o after PAD4 treatment. 

Fig. 6 B (1-3)
DNP agarose gels showing DNA size markers (lane 1) and native electrophoresis of the control (lane 2) and PAD4-treated (lanes 3) reconstituted nucleosome core arrays crosslinked with glutaraldehyde at 1 mM Mg2+

Fig. 6 B (4-10)
DNP agarose gels showing DNA size markers (lane 4) and control (lanes 5, 7, 9) and PAD4-treated (lanes 6, 8, 10) reconstituted 183x12+H1 arrays after PAD4 treatment crosslinked at 0 to 1 mM Mg2+ as indicated.

Supp. Fig. S1 A
18% SDS-PAGE gel stained by Coomassie R250 shows molecular mass markers (1) and histones of K562 fraction #10 chromatin incubated at the indicated concentration of Mg2+ together with 10 nm fiduciary gold particles for 48 hrs. at +4oC (2 – 9). 

Supp. Fig. S3 A
Lanes 1-6 (S3 A) correspond to lanes 5-11: DNA size markers (lanes 5, 7, 9, 11), DNA of native MNase-digested chromatin isolated from K562 cells (6), HeLa cells (8) and PN21 mouse retina cells (10).
DOI: 10.6084/m9.figshare.10252919.v3
title: A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.

description: File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here. Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC). Table S2: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases. Figure S1: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes. Table S3: This contains the list of genes in LGs 1, 2, 7 and 12. File S2: The putative 258bp centromere repeat sequence.gadMor_celtic_repeat_Library.fa.txt - Repeat library<br><br>gadMor_Celtic.fa.txt -Genome assembly<br>
DOI: 10.17632/59cm2mpyck
title: Data for: Anchored hybrid enrichment phylogenomics resolves the backbone of erebine moths (Lepidoptera: Noctuoidea)

description: Alignment used for ML analyses.
DOI: 10.17632/68z25wzfbv
title: Russian Regional Knowledge Economy Index (Russian RKEI)

description: Grounding on the World Bank's Knowledge Economy Index indicators, the authors developed the Russian Regional Knowledge Economy Index (Russian RKEI).