cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21498252.v1
title: Hormone profiling in artificially induced ‘crumbly’ fruit in raspberry (<i>Rubus idaeus</i> L.) at two different development stages

description: In red raspberry, a condition known as ‘crumbly’ fruit causes the formation of misshapen fruits with drupelets reduced in number but enlarged in size. Complex fruits such as those of raspberry, formed by the aggregation of many fertilised ovaries, require a regulating mechanism to coordinate and synchronise their growth and development. The receptacle was hypothesised as the leading hub that, by means of hormonal crosstalk with the fertilised ovaries, regulates the fruit growth process. Experiments were designed to perturb the regulating system by damaging the receptacle of hand pollinated flowers of the floricane-fruiting variety Glen Ample to produce artificially crumbly fruits. Hormone profiling was performed in control and artificially induced crumbly fruit samples at two stages of development green developing fruit and red ripe fruit. Of the hormones that could be adequately detected and quantified, abscisic acid (ABA) was elevated in the receptacle of crumbly samples at both developmental stages while SA was higher only in green fruit receptacles. In the druplets, <i>trans</i>-zeatin (<i>t</i>Z) concentration was greater in green than red fruit but the crumbly treatment did not influence content. The data highlight a potential role for these three phytohormones in the development of misshapen ‘crumbly-like’ fruits.
DOI: 10.6084/m9.figshare.21558316.v1
title: Extension of postharvest life by application of edible coatings on tomatoes var. 234 with silencing of the <i>TomLoxb</i> gene

description: Fruit mutants with the silenced <i>TomloxB</i> gene (tomato lipoxygenase B) have proven to be an alternative in extending postharvest life; however, their interaction with other classical technologies, such as the use of edible coatings, has been scarcely explored. The synergy between the two treatments can improve aspects of fruit quality during its postharvest life or even increase this period. Therefore, the objective of this study was to evaluate the effect of coatings (candelilla wax (CW) and Semperfresh® (S)) on the postharvest life and lipoxygenase activity of genetically modified (GM) tomatoes. Wild Type (WT) and GM tomatoes with the antisense <i>TomLoxB</i> gene insertion were used. LOX activity values on day 18 were 721 U/mg protein, in fruits coated with CW, below the WT fruit (859 U/mg protein) and other GM fruits with other coatings (916 to 996 U/mg protein). CW was the coating that exhibited the best results in preserving the postharvest life of the GM tomato for up to 30 days, compared to the other coatings (24 days). Genetic modification in tomatoes prolonged their postharvest life, which increased further with the use of coatings such as CW.
DOI: 10.6084/m9.figshare.21259191
title: Application of virus-induced gene silencing in <i>Pogostemon cablin</i> advances our understanding of patchoulol and sesquiterpene metabolism

description: In plant species, virus-induced gene silencing (VIGS) effectively enables the transient knock down of target genes for functional analysis. To overcome the bottleneck preventing the functional genomics and biological engineering of <i>Pogostemon cablin</i> (Blanco) Benth. an important medicinal and industrial plant with high-value natural products, the VIGS system was established to enable the fast and efficient functional characterisation of candidate genes. In our study, the effectiveness of phytoene desaturase (PDS) gene silencing by VIGS was monitored by the visual indications in P. cablin and the activation effect spanned several months. VIGS of the PatPTS gene, encoding patchoulol synthase, caused a decline in expression abundance, resulting in a significant decreasing accumulation of patchouli alcohol and other sesquiterpenes. Cosilencing of PatPDS and PatPTS in <i>P. cablin</i> also suppressed the biosynthesis of patchouli alcohol. Negative feedback of the MVA and MEP pathway genes was demonstrated in PatPTS-silenced plants.
DOI: 10.6084/m9.figshare.21259191.v1
title: Application of virus-induced gene silencing in <i>Pogostemon cablin</i> advances our understanding of patchoulol and sesquiterpene metabolism

description: In plant species, virus-induced gene silencing (VIGS) effectively enables the transient knock down of target genes for functional analysis. To overcome the bottleneck preventing the functional genomics and biological engineering of <i>Pogostemon cablin</i> (Blanco) Benth. an important medicinal and industrial plant with high-value natural products, the VIGS system was established to enable the fast and efficient functional characterisation of candidate genes. In our study, the effectiveness of phytoene desaturase (PDS) gene silencing by VIGS was monitored by the visual indications in P. cablin and the activation effect spanned several months. VIGS of the PatPTS gene, encoding patchoulol synthase, caused a decline in expression abundance, resulting in a significant decreasing accumulation of patchouli alcohol and other sesquiterpenes. Cosilencing of PatPDS and PatPTS in <i>P. cablin</i> also suppressed the biosynthesis of patchouli alcohol. Negative feedback of the MVA and MEP pathway genes was demonstrated in PatPTS-silenced plants.
DOI: 10.6084/m9.figshare.21558316
title: Extension of postharvest life by application of edible coatings on tomatoes var. 234 with silencing of the <i>TomLoxb</i> gene

description: Fruit mutants with the silenced <i>TomloxB</i> gene (tomato lipoxygenase B) have proven to be an alternative in extending postharvest life; however, their interaction with other classical technologies, such as the use of edible coatings, has been scarcely explored. The synergy between the two treatments can improve aspects of fruit quality during its postharvest life or even increase this period. Therefore, the objective of this study was to evaluate the effect of coatings (candelilla wax (CW) and Semperfresh® (S)) on the postharvest life and lipoxygenase activity of genetically modified (GM) tomatoes. Wild Type (WT) and GM tomatoes with the antisense <i>TomLoxB</i> gene insertion were used. LOX activity values on day 18 were 721 U/mg protein, in fruits coated with CW, below the WT fruit (859 U/mg protein) and other GM fruits with other coatings (916 to 996 U/mg protein). CW was the coating that exhibited the best results in preserving the postharvest life of the GM tomato for up to 30 days, compared to the other coatings (24 days). Genetic modification in tomatoes prolonged their postharvest life, which increased further with the use of coatings such as CW.
DOI: 10.5063/f1707zwh
title: Drying, more than warming, alters ecosystem functioning in streams with different energy pathways

description: Empirical evidence and theory suggest that climate warming and an increase in the frequency and duration of drying events will alter the metabolic balance of freshwater ecosystems. However, the impacts of climate change on ecosystem metabolism may depend on whether energy inputs are of autochthonous or allochthonous origin. To date, few studies have examined how warming and drying may interact to alter stream metabolism, much less how their impacts may depend on the energy-base of the food web. To address this research gap, we conducted a multi-factorial experiment using outdoor mesocosms to investigate the individual and synergistic effects of warming and drought on metabolic processes in stream mesocosms with green (algal-based) vs. mixed (algal- and detritus-based) vs. brown (detritus-based) energy pathways. We set up 48 mesocosms with one of three different levels of shade and leaf litter input combinations to create mesocosms with different primary energy channels. In addition, we warmed half of the mesocosms by ~2–3C. We assessed changes in ecosystem respiration (ER), gross primary production (GPP), net ecosystem production (NEP), and organic matter biomass in warmed and ambient temperature mesocosms before a 24 day drying event and after rewetting. Surprisingly, experimental warming had little effect on metabolic processes. Drying, however, led to decreased rates of ER and GPP and led to an overall reduction in NEP. Although the effects of drying were similar across energy channel treatments, reductions in ER and GPP were primarily driven by decreases in biomass of benthic and filamentous algae. Overall, we demonstrate that drying led to lower rates of NEP in mesocosms regardless of energy inputs. While warming showed little effect in our study, our results suggest that an increase in the frequency of stream drying events could greatly alter the metabolic balance of many aquatic ecosystems.
DOI: 10.21227/ckhd-zn63
title: Walking posture with sound

description: Absract
DOI: 10.6084/m9.figshare.22682710
title: completed STROBE check list

description: completed STROBE checklist
DOI: 10.6084/m9.figshare.22682710.v1
title: completed STROBE check list

description: completed STROBE checklist
DOI: 10.4121/3df8777a-3c9a-4a1f-a2d5-f487ca211897
title: Dataset of Fully Polarimetric Rough Surface Scattering from Sandpaper and Road Surfaces in Various Conditions Measured at 75 to 85 GHz

description: Dataset of fully polarimetric rough surface scattering from various surfaces including different types of sandpaper and road surfaces in various conditions. Measurements were collected using a vector network analyser in the frequency band ranging from 75-85 GHz. Please see README.pdf for more details.
DOI: 10.4121/3df8777a-3c9a-4a1f-a2d5-f487ca211897.v1
title: Dataset of Fully Polarimetric Rough Surface Scattering from Sandpaper and Road Surfaces in Various Conditions Measured at 75 to 85 GHz

description: Dataset of fully polarimetric rough surface scattering from various surfaces including different types of sandpaper and road surfaces in various conditions. Measurements were collected using a vector network analyser in the frequency band ranging from 75-85 GHz. Please see README.pdf for more details.
DOI: 10.17043/zhang-2023-holocene-vegetation-1
title: Mid-Holocene and pre-industrial climate data from EC-Earth3 and LPJ-GUESS models to study vegetation-climate feedback
DOI: 10.6084/m9.figshare.22564375
title: Volné komentáře_sekce hodnocení k dotazníku

description: <strong>Volné komentáře_sekce hodnocení dotazníku</strong>
DOI: 10.6084/m9.figshare.22564375.v1
title: Volné komentáře_sekce hodnocení k dotazníku

description: <strong>Volné komentáře_sekce hodnocení dotazníku</strong>
DOI: 10.6084/m9.figshare.22564381
title: Volné komentáře_sekce specializační vzdělávání_administrativa

description: <strong>Volné komentáře sekce specializační vzdělávání administrativa</strong>
DOI: 10.6084/m9.figshare.22564381.v1
title: Volné komentáře_sekce specializační vzdělávání_administrativa

description: <strong>Volné komentáře sekce specializační vzdělávání administrativa</strong>
DOI: 10.6084/m9.figshare.22564384
title: Volné komentáře_sekce specializační vzdělávání_klinický provoz

description: <strong>Volné komentáře sekce specializační vzdělávání - klinický provoz</strong>
DOI: 10.6084/m9.figshare.22564384.v1
title: Volné komentáře_sekce specializační vzdělávání_klinický provoz

description: <strong>Volné komentáře sekce specializační vzdělávání - klinický provoz</strong>
DOI: 10.6084/m9.figshare.22564387
title: Volné komentáře_sekce diskriminace

description: <strong>Volné komentáře sekce diskriminace</strong>
DOI: 10.5281/zenodo.7757122
title: Listeria plasmid data

description: Data for analysis of Listeria plasmids Assemblies were downloaded from NCBI and analyzed with the MOB-suite. The MOB-recon results for all of the assemblies is available “mob.recon.tar.gz” and the original assemblies can be reconstructed by “cat {acs}/*.fasta &gt; {acs}.fasta”. It is roughly 45GB in size, so to save extra downloading issues it is provided as just the MOB-recon results. In order for the data to be uploaded to zenodo, the tarball had to be split into smaller-sized files. So “mob.results.tar.gz” is split into 2GB files with the suffix {part[A-V]}. The tarball can be reconstructed by doing “cat mob.recon.tar* &gt; mob.results.tar.gz”. On the original assemblies, the samples were typed according to the 7-gene MLST scheme using mlst (https://github.com/tseemann/mlst) v2.23.0 and the lineage, and CC added based on the table provided by the Pasteur institute Using abricate v1.0.0 (https://github.com/tseemann/abricate) I have performed gene finding for BacMet db (https://github.com/jrober84/bacmet) “merged.bacmet.txt “, VFDB “merged.vfdb.txt”. Chewbbaca cgMLST Allele calls for each genome and a profile of all of the allele calls is provided "chew.alleles.profiles.txt.gz". Sample Metadata master table “ListeriaSampleManifest.xlsx”, there are samples which are not in pathogen detection and so do not have additional metadata associated with them. The metadata would need to be extracted from the SRA. This also needs to be standardized and cleaned up for analysis.
DOI: 10.5281/zenodo.7757121
title: Listeria plasmid data

description: Data for analysis of Listeria plasmids Assemblies were downloaded from NCBI and analyzed with the MOB-suite. The MOB-recon results for all of the assemblies is available “mob.recon.tar.gz” and the original assemblies can be reconstructed by “cat {acs}/*.fasta &gt; {acs}.fasta”. It is roughly 45GB in size, so to save extra downloading issues it is provided as just the MOB-recon results. In order for the data to be uploaded to zenodo, the tarball had to be split into smaller-sized files. So “mob.results.tar.gz” is split into 2GB files with the suffix {part[A-V]}. The tarball can be reconstructed by doing “cat mob.recon.tar* &gt; mob.results.tar.gz”. On the original assemblies, the samples were typed according to the 7-gene MLST scheme using mlst (https://github.com/tseemann/mlst) v2.23.0 and the lineage, and CC added based on the table provided by the Pasteur institute Using abricate v1.0.0 (https://github.com/tseemann/abricate) I have performed gene finding for BacMet db (https://github.com/jrober84/bacmet) “merged.bacmet.txt “, VFDB “merged.vfdb.txt”. Chewbbaca cgMLST Allele calls for each genome and a profile of all of the allele calls is provided "chew.alleles.profiles.txt.gz". Sample Metadata master table “ListeriaSampleManifest.xlsx”, there are samples which are not in pathogen detection and so do not have additional metadata associated with them. The metadata would need to be extracted from the SRA. This also needs to be standardized and cleaned up for analysis.
DOI: 10.6084/m9.figshare.21382656
title: Assessing the efficacy of non-destructive testing methods to detect pitting corrosion

description: Calibration of the non-destructive testing (NDT) methods for pipeline inspections is commonly done via machined defects with simple shapes and known sizes. However, such defects do not represent, e.g. an actual pit morphology observed in the field, which could lead to the unreliable interpretation of the inspection results. This work proposed a systematic approach to create and characterise real pits in stainless steel pipe specimens to assess the sensitivity of selected NDT methods. Pipe samples with three different diameters and thicknesses were used. Pits of different geometries and dimensions were generated by electrochemical methods, and immersion in an acidic ferric chloride solution filled in pre-drilled holes on the external surface of the specimens. NDT methods including radiography, Eddy current and dye penetrant testing were used for detecting and sizing the pits. The results were then compared with true pit depths obtained from cross-section analysis. Radiography and Eddy current methods failed to detect small pits with depths less than 70 µm. The porous metal cover on the pit mouth affected the detectability of radiography, while it had little impact on Eddy current testing. The findings of this investigation could be used to design training and calibration blocks for NDT methods.
DOI: 10.6084/m9.figshare.21382656.v1
title: Assessing the efficacy of non-destructive testing methods to detect pitting corrosion

description: Calibration of the non-destructive testing (NDT) methods for pipeline inspections is commonly done via machined defects with simple shapes and known sizes. However, such defects do not represent, e.g. an actual pit morphology observed in the field, which could lead to the unreliable interpretation of the inspection results. This work proposed a systematic approach to create and characterise real pits in stainless steel pipe specimens to assess the sensitivity of selected NDT methods. Pipe samples with three different diameters and thicknesses were used. Pits of different geometries and dimensions were generated by electrochemical methods, and immersion in an acidic ferric chloride solution filled in pre-drilled holes on the external surface of the specimens. NDT methods including radiography, Eddy current and dye penetrant testing were used for detecting and sizing the pits. The results were then compared with true pit depths obtained from cross-section analysis. Radiography and Eddy current methods failed to detect small pits with depths less than 70 µm. The porous metal cover on the pit mouth affected the detectability of radiography, while it had little impact on Eddy current testing. The findings of this investigation could be used to design training and calibration blocks for NDT methods.
DOI: 10.5517/ccdc.csd.cc255k75
title: CCDC 2001336: Experimental Crystal Structure Determination

description: Related Article: Franziska Kreuzer, Anna Aubele, Elena Mena‐Osteritz, Peter Bäuerle|2023|Eur.J.Org.Chem.|26|e202300023|doi:10.1002/ejoc.202300023
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc255k86
title: CCDC 2001337: Experimental Crystal Structure Determination

description: Related Article: Franziska Kreuzer, Anna Aubele, Elena Mena‐Osteritz, Peter Bäuerle|2023|Eur.J.Org.Chem.|26|e202300023|doi:10.1002/ejoc.202300023
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc255l76
title: CCDC 2001367: Experimental Crystal Structure Determination

description: Related Article: Franziska Kreuzer, Anna Aubele, Elena Mena‐Osteritz, Peter Bäuerle|2023|Eur.J.Org.Chem.|26|e202300023|doi:10.1002/ejoc.202300023
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28d6ws
title: CCDC 2097115: Experimental Crystal Structure Determination

description: Related Article: Huaping Xu, Xiaoyu Kong, Mengjie Cen, Ze‐Feng Xu, Shengguo Duan, Chuan‐Ying Li|2023|Eur.J.Org.Chem.|26|e202201417|doi:10.1002/ejoc.202201417
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28d6xt
title: CCDC 2097116: Experimental Crystal Structure Determination

description: Related Article: Huaping Xu, Xiaoyu Kong, Mengjie Cen, Ze‐Feng Xu, Shengguo Duan, Chuan‐Ying Li|2023|Eur.J.Org.Chem.|26|e202201417|doi:10.1002/ejoc.202201417
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bkntd
title: CCDC 2161934: Experimental Crystal Structure Determination

description: Related Article: Juliane Schoening, Christoph Wölper, Stephan Schulz|2023|Eur.J.Inorg.Chem.|26|e202200638|doi:10.1002/ejic.202200638
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bknvf
title: CCDC 2161935: Experimental Crystal Structure Determination

description: Related Article: Juliane Schoening, Christoph Wölper, Stephan Schulz|2023|Eur.J.Inorg.Chem.|26|e202200638|doi:10.1002/ejic.202200638
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bknwg
title: CCDC 2161936: Experimental Crystal Structure Determination

description: Related Article: Juliane Schoening, Christoph Wölper, Stephan Schulz|2023|Eur.J.Inorg.Chem.|26|e202200638|doi:10.1002/ejic.202200638
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2blg3j
title: CCDC 2162687: Experimental Crystal Structure Determination

description: Related Article: Daniel Umereweneza, Yoseph Atilaw, Stefan Peintner, Anastasia Rudenko, Catarina Bourgard, Ruisheng Xiong, Théoneste Muhizi, Per Sunnerhagen, Adolf Gogoll, Mate Erdelyi|2023|Eur.J.Org.Chem.|26|e202201280|doi:10.1002/ejoc.202201280
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bx3zc
title: CCDC 2171983: Experimental Crystal Structure Determination

description: Related Article: Kaixin Zhang, Jianxiong Xu, Jinxiang Xiao, Ronglin Zhong, Jizhen Li|2023|Eur.J.Org.Chem.|26|e202201432|doi:10.1002/ejoc.202201432
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.