DOI: 10.5061/dryad.2bvq83bwq
title: Data for: The ErythronDB Dataset of the cellular and molecular underpinnings of mammalian erythropoiesis

description: The Erythron Database (ErythronDB) was a resource dedicated to
 facilitating better understanding of the cellular and molecular
 underpinnings of mammalian erythropoiesis. For more information about this
 project, please visit
 https://cstoeckert.github.io/past-projects/ErythronDB.html.
description: # ErythronDB Database
 [https://doi.org/10.5061/dryad.2bvq83bwq](https://doi.org/10.5061/dryad.2bvq83bwq) The Erythron Database (ErythronDB) was a resource dedicated to facilitating better understanding of the cellular and molecular underpinnings of mammalian erythropoiesis. For more information about this project, please visit [https://cstoeckert.github.io/past-projects/ErythronDB.html](https://cstoeckert.github.io/past-projects/ErythronDB.html). The project has been retired, but users can deploy the website and paired-database on their own systems using Docker and the [ErythronDB-docker build](https://github.com/ErythronDB/erythrondb-docker), available freely on GitHub. ## Description of the data and file structure This dataset is the database that powers the ErythrondDB website, which is required to deploy the containerized website: * *erythrondb.sql.gz* \- a gzipped PostgreSQL database dump Also included are the following files: * *md5sums.txt* \- md5sum file for the database dump file * *web-db-creds.txt* \- credentials required for the website to access the database\. If planning to deploy publicly\, these should be changed\. ## Sharing/Access information Any publications referencing ErythronDB ***records/reports***, ***search results*** or ***analysis tools*** should cite the following publication: Kinglsey et al. 2013. Ontogeny of erythroid gene expression. E-blood: [https://doi.org/10.1182/blood-2012-04-422394](https://doi.org/10.1182/blood-2012-04-422394) The following citations should be used to acknowledge ***specific datasets*** in ErythronDB: ### Mouse Transcriptomics * *Ontogeny of erythroid gene expression* Kinglsey et al. 2013. Ontogeny of erythroid gene expression. E-blood: [https://doi.org/10.1182/blood-2012-04-422394](https://doi.org/10.1182/blood-2012-04-422394) ArrayExpress Accession: [E-MTAB-1035](https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1035) * *EPO-regulated targets in murine erythroid progenitors* Wojchowski, D. et al. 2017. ArrayExpress Accession: [E-MTAB-5373](https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5373) * *EPO-regulated targets in murine E1 cells with a truncated erthropoietin receptor (EpoR)* Wojchowski, D. et al. EPO-regulated targets in murine E1 cells with a truncated erthropoietin receptor (EpoR). ErythronDB Website ### Human Proteomics * *EPO phosphorylation PTM targets in UT-7epo-E cells* Held MA et al. 2020. Phospho-proteomic discovery of novel signal transducers including thioredoxin-interacting protein as mediators of erythropoietin-dependent human erythropoiesis. Experimental hematology: [https://doi.org/10.1016/j.exphem.2020.03.003](https://doi.org/10.1016/j.exphem.2020.03.003) Held MA et al. 2020. Phospho-PTM proteomic discovery of novel EPO-modulated kinases and phosphatases, including PTPN18 as a positive regulator of EPOR/JAK2 Signaling. Cellular signalling: [https://doi.org/10.1016/j.cellsig.2020.109554](https://doi.org/10.1016/j.cellsig.2020.109554) ## Code/Software A detailed README about building the ErythronDB website to access the data is available on GitHub: [https://github.com/ErythronDB/erythrondb-docker.](https://github.com/ErythronDB/erythrondb-docker.)