cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c52q24
title: MassIVE MSV000084577 - ExpeAissatouMetabo-C18 and HILIC PosNeg pool MS/MS
title: Serum humain extraction metabolomique altitude avec blancs autre manip
DOI: 10.5281/zenodo.3518985
title: Tau deposition is associated with imaging patterns of calcifications and immunhistochemical markers of osteogenesis in the P301L mouse model of human tauopathy

description: Brain calcifications are associated with several neurodegenerative proteinopathies. Here, we report a new phenotype of imaging pattern of intracranial calcifications in transgenic P301L mice overexpressing 4 repeat human tau. P301L mice (Thy1.2) of 3, 5, 9 and 18-25 months-of-age and age-matched non-transgenic littermates (n = 4-11 per group) were assessed using <em>in vivo / ex vivo</em> magnetic resonance imaging with a gradient recalled echo sequence and micro computed tomography. Susceptibility weighted images computed from the gradient recalled echo data revealed regional hypointensities in the hippocampus, cortex, caudate nucleus and thalamus of P301L mice, in which corresponding phase images indicated diamagnetic lesions. In the hippocampus, occurrence of diamagnetic susceptibility calcifications increased with age. Concomitantly micro computed tomography detected hyperdense lesions. Immunochemical staining of brain sections revealed osteocalcin positive nodules, which is a marker of osteogenic maturation. Furthermore, we found vessel-associated and intra-neuronal osteocalcin positivity co-localizing with phosphorylated tau (AT8 and AT100) in the hippocampus. In contrast, osteocalcin containing nodules were vessel-associated, indicating ossified vessels, in the thalamus in absence of phosphorylated tau. In summary, we demonstrated imaging pattern of intracranial calcifications, early spheroid formation containing proteins associated with ossification along with phosphorylated tau in the P301L mouse model of human tauopathy.
DOI: 10.5281/zenodo.3518986
title: Tau deposition is associated with imaging patterns of calcifications and immunhistochemical markers of osteogenesis in the P301L mouse model of human tauopathy

description: Brain calcifications are associated with several neurodegenerative proteinopathies. Here, we report a new phenotype of imaging pattern of intracranial calcifications in transgenic P301L mice overexpressing 4 repeat human tau. P301L mice (Thy1.2) of 3, 5, 9 and 18-25 months-of-age and age-matched non-transgenic littermates (n = 4-11 per group) were assessed using <em>in vivo / ex vivo</em> magnetic resonance imaging with a gradient recalled echo sequence and micro computed tomography. Susceptibility weighted images computed from the gradient recalled echo data revealed regional hypointensities in the hippocampus, cortex, caudate nucleus and thalamus of P301L mice, in which corresponding phase images indicated diamagnetic lesions. In the hippocampus, occurrence of diamagnetic susceptibility calcifications increased with age. Concomitantly micro computed tomography detected hyperdense lesions. Immunochemical staining of brain sections revealed osteocalcin positive nodules, which is a marker of osteogenic maturation. Furthermore, we found vessel-associated and intra-neuronal osteocalcin positivity co-localizing with phosphorylated tau (AT8 and AT100) in the hippocampus. In contrast, osteocalcin containing nodules were vessel-associated, indicating ossified vessels, in the thalamus in absence of phosphorylated tau. In summary, we demonstrated imaging pattern of intracranial calcifications, early spheroid formation containing proteins associated with ossification along with phosphorylated tau in the P301L mouse model of human tauopathy.
DOI: 10.18716/nmrshiftdb2/2611
title: NMR data for Felodipine
DOI: 10.25345/c5z087
title: MassIVE MSV000084578 - Spatiotemporal Profiling of Cytosolic Signaling Complexes in Living Cells by High-selective Proximity Proteomics
title: Cells often respond to the keep-changing external environments by regulating protein production, conformation, immigration, protein complexes shuffling etc. The acquiring of information about protein complexes and protein shifting currently generally requires a combination of various technologies including AP-MS, immunofluorescence, cell fractionation with density gradient centrifugation, etc. However, there is no efficient approach to uncovering temporal and spatial information of protein complexes in one shot, not even say in living cells. Here, we developed an APEX2 enzyme activity-based proximity labeling method with low noise and high selectivity for capturing protein complexes and spatial immigrating information of non-fixed cytosolic proteins in dynamic changes in living cells. APEX2 has been used for capturing spatial-temporal protein complex, but was restricted to membrane-fixed protein like GPCR, due to its dirty noise background. We have been focusing on screening of a biotin phenol analogue with proper labeling efficiency but neat background, and combined with quantitative proteomics, we appreciatively applied proximity labeling not only to capturing of cytosolic protein complexes, but also to the capturing of time and spatial information of dynamic protein complexes at different time points upon EGF stimulation in living cells.
DOI: 10.18716/nmrshiftdb2/2742
title: NMR data for 2-Methoxy-2-(4'-hydroxyphenyl)ethanol
DOI: 10.18716/nmrshiftdb2/2778
title: NMR data for Schizopeptin 791
DOI: 10.5281/zenodo.3540498
title: Treponema pallidum Cytoplasmic filament protein gene partial sequence

description: A partial sequence of the Cytoplasmic filament protein gene (cfpA) of treponema pallidum from non human primates
description: A representative sequence
DOI: 10.5281/zenodo.3540499
title: Treponema pallidum Cytoplasmic filament protein gene partial sequence

description: A partial sequence of the Cytoplasmic filament protein gene (cfpA) of treponema pallidum from non human primates
description: A representative sequence
DOI: 10.18716/nmrshiftdb2/2610
title: NMR data for 4-[6-(4-chloro-phenyl)-[1,2,4]triazolo[3,4-b][1,3,4]thiadiazol-3-yl]-2-phenyl-quinoline
DOI: 10.5281/zenodo.3540533
title: APPUiO PaaS container cloud tracefile

description: Anonymized data set from APPUiO Public Container Cloud. For more info, please refer to README.md
DOI: 10.5281/zenodo.3540532
title: APPUiO PaaS container cloud tracefile

description: Anonymized data set from APPUiO Public Container Cloud. For more info, please refer to README.md
DOI: 10.18716/nmrshiftdb2/2694
title: NMR data for Isoomphadione
DOI: 10.18716/nmrshiftdb2/2695
title: NMR data for Illudiolone
DOI: 10.5523/bris.37jph3jyyv6ml2b5e6py6hekte
title: Bristol 1474: Particulars of account of Thomas Croft and John Langston, customers, 10 April 1474 to 29 September 1474

description: Digitised Customs Account records relating to the Port of Bristol, April 1474 - September 1474
DOI: 10.15129/df032aa8-2b85-4ec8-adf8-ad435806b81b
title: Data for: "Adapting the 3D-printed Openflexure microscope enables computational super-resolution imaging"

description: Supporting dataset for submission of paper to f1000 research. Contains the unprocessed data for each of the figures in the paper (in .avi files), the sub-figures uses in the paper along with a folder containing the .stl files that allow 3D-printing of the parts for the microscope described in the paper. All included files are able to be opened by readily available (typically open source) software. The dataset contains four folders, three of which (Figure NV, Figure-Layout, Figure-Macrophages) are made available here under CC-BY 4.0 licence. Please note that data contained in the folder "Microscope STL Files" are made available under the CERN Open Hardware licence (See https://ohwr.org/cernohl for full terms and conditions).
DOI: 10.18716/nmrshiftdb2/2698
title: NMR data for Hispidulin 7-(6-E-p-coumaroyl--D-glucopyranoside)
DOI: 10.21227/44yr-zk84
title: Intellectual capital data of China’s Information Technology Industry

description: This data set contains the data of intellectuall capital dimensions,firm situation and value added data of China's information technology industry.
DOI: 10.21227/reg4-wv56
title: Intellectual capital data of China’s Information Technology Industry

description: This data set contains the data of intellectuall capital dimensions,firm situation and value added data of China's information technology industry.
DOI: 10.18716/nmrshiftdb2/2693
title: NMR data for 15,16-Epoxy-5,10-seco-clerodan-1(10),2,4,13(16),14-pentaen-18,19-olide
DOI: 10.5281/zenodo.3533418
title: Neutron tomography (CT) image data of tungsten fusion energy heat exchange components

description: Neutron tomography (CT) image data of tungsten fusion energy heat exchange components. The dataset includes three sets of images: ITER_171T-WA-0002_MB (ITER reference monoblock) CCFE_ThBr_MB (Culham Centre for Fusion Energy thermal break concept monoblock) ROIsamples_Stack (A stack of four region of interest samples*) The region of interest samples within the stack are as below: CCFE_ThBr_ROI (Culham Centre for Fusion Energy thermal break concept monoblock) IPP_Wf-Cu_p5_s1 (Max-Planck-Institut für Plasmaphysik tungsten fibre / copper matrix coolant pipe) ITER_HHFT_ROI (ITER reference monoblock which has undergone high heat flux testing) ITER_17IT-WA-0002_ROI (ITER reference monoblock) This data was used originally for the following publication (please cite if re-using the data) where further details on the data may be obtained: Ll.M. Evans, L. Margetts, P.D. Lee, C.A.M. Butler, E. Surrey, “Image based in silico characterisation of the effective thermal properties of a graphite foam”, Carbon, Vol. 143, pp. 542-558, 2018. https://doi.org/10.1016/j.carbon.2018.10.031 Each of the sample directories include reconstructed slices in Tiff format. To visualise the 3D volume use software such as ImageJ (https://imagej.net/Fiji/Downloads). CCFE_ThBr_ROI and ROIsamples_Stack include raw radiographs; dark and flat field images; scan & reconstruction parameter settings file. ITER_171T-WA-0002_MB includes data relating to the modulation transfer function (MTF) measurement. An X-Ray CT version of the ROI data is available for comparison: https://doi.org/10.5281/zenodo.3533420 Image-based simulation (IBSim) meshes were generated directly from these datasets: https://doi.org/10.5281/zenodo.3533422
DOI: 10.5281/zenodo.3533417
title: Neutron tomography (CT) image data of tungsten fusion energy heat exchange components

description: Neutron tomography (CT) image data of tungsten fusion energy heat exchange components. The dataset includes three sets of images: ITER_171T-WA-0002_MB (ITER reference monoblock) CCFE_ThBr_MB (Culham Centre for Fusion Energy thermal break concept monoblock) ROIsamples_Stack (A stack of four region of interest samples*) The region of interest samples within the stack are as below: CCFE_ThBr_ROI (Culham Centre for Fusion Energy thermal break concept monoblock) IPP_Wf-Cu_p5_s1 (Max-Planck-Institut für Plasmaphysik tungsten fibre / copper matrix coolant pipe) ITER_HHFT_ROI (ITER reference monoblock which has undergone high heat flux testing) ITER_17IT-WA-0002_ROI (ITER reference monoblock) This data was used originally for the following publication (please cite if re-using the data) where further details on the data may be obtained: Ll.M. Evans, L. Margetts, P.D. Lee, C.A.M. Butler, E. Surrey, “Image based in silico characterisation of the effective thermal properties of a graphite foam”, Carbon, Vol. 143, pp. 542-558, 2018. https://doi.org/10.1016/j.carbon.2018.10.031 Each of the sample directories include reconstructed slices in Tiff format. To visualise the 3D volume use software such as ImageJ (https://imagej.net/Fiji/Downloads). CCFE_ThBr_ROI and ROIsamples_Stack include raw radiographs; dark and flat field images; scan & reconstruction parameter settings file. ITER_171T-WA-0002_MB includes data relating to the modulation transfer function (MTF) measurement. An X-Ray CT version of the ROI data is available for comparison: https://doi.org/10.5281/zenodo.3533420 Image-based simulation (IBSim) meshes were generated directly from these datasets: https://doi.org/10.5281/zenodo.3533422
DOI: 10.5281/zenodo.3533419
title: X-ray tomography (CT) image data of tungsten fusion energy heat exchange components

description: X-ray tomography (CT) image data of tungsten fusion energy heat exchange components. The dataset includes images of four samples: CCFE_MB_ROI (Culham Centre for Fusion Energy thermal break concept monoblock, region of interest sample) IPP_Wf-Cu (Max-Planck-Institut für Plasmaphysik tungsten fibre / copper matrix coolant pipe) ITER_HHFT_ROI (ITER reference monoblock which has undergone high heat flux testing, region of interest sample) ITER_MB_ROI (ITER reference monoblock, region of interest sample) This data was used originally for the following publication (please cite if re-using the data) where further details on the data may be obtained: Ll.M. Evans, L. Margetts, P.D. Lee, C.A.M. Butler, E. Surrey, “Image based in silico characterisation of the effective thermal properties of a graphite foam”, Carbon, Vol. 143, pp. 542-558, 2018. https://doi.org/10.1016/j.carbon.2018.10.031 Each of the sample directories include reconstructed slices in Tiff format. To visualise the 3D volume use software such as ImageJ (https://imagej.net/Fiji/Downloads). CCFE_MB_ROI also includes raw radiographs; scan & reconstruction parameter settings file. A Neutron CT version of this data is available for comparison: https://doi.org/10.5281/zenodo.3533418 Image-based simulation (IBSim) meshes were generated directly from these datasets: https://doi.org/10.5281/zenodo.3533422
DOI: 10.5281/zenodo.3533420
title: X-ray tomography (CT) image data of tungsten fusion energy heat exchange components

description: X-ray tomography (CT) image data of tungsten fusion energy heat exchange components. The dataset includes images of four samples: CCFE_MB_ROI (Culham Centre for Fusion Energy thermal break concept monoblock, region of interest sample) IPP_Wf-Cu (Max-Planck-Institut für Plasmaphysik tungsten fibre / copper matrix coolant pipe) ITER_HHFT_ROI (ITER reference monoblock which has undergone high heat flux testing, region of interest sample) ITER_MB_ROI (ITER reference monoblock, region of interest sample) This data was used originally for the following publication (please cite if re-using the data) where further details on the data may be obtained: Ll.M. Evans, L. Margetts, P.D. Lee, C.A.M. Butler, E. Surrey, “Image based in silico characterisation of the effective thermal properties of a graphite foam”, Carbon, Vol. 143, pp. 542-558, 2018. https://doi.org/10.1016/j.carbon.2018.10.031 Each of the sample directories include reconstructed slices in Tiff format. To visualise the 3D volume use software such as ImageJ (https://imagej.net/Fiji/Downloads). CCFE_MB_ROI also includes raw radiographs; scan & reconstruction parameter settings file. A Neutron CT version of this data is available for comparison: https://doi.org/10.5281/zenodo.3533418 Image-based simulation (IBSim) meshes were generated directly from these datasets: https://doi.org/10.5281/zenodo.3533422
DOI: 10.5281/zenodo.3533421
title: Finite element meshes of conceptual designs for a fusion energy heat exchange component (monoblock) for Image-Based Simulation (IBSim) of in-service conditions

description: Image-Based Simulation (IBSim) mesh and temperature analysis results:<br> Finite element meshes of conceptual designs for a fusion energy heat exchange component (monoblock). The dataset includes three meshes:<br> - CCFE_ThBr_CAD (mesh created by with a computer aided design (CAD) package)<br> - CCFE_ThBr_IBFEM (hybrid CAD and IBSim mesh, manufactured version of CCFE_ThBr_CAD)<br> - IPP_WfCu_IBFEM_3MB (hybrid CAD and IBSim mesh, tungsten fibre-copper matrix composite pipe with tungsten armour) For the the hybrid meshes, the IBSim part is generated directly from a 3D volumetric images of the real manufactured parts and as such includes microscale features introduced during the manufacturing stage. The 3D images were generated with X-ray and neutron tomography, the datasets are available at the links below. Conversion of the data to FE mesh was achieved using ScanIP, part of the Simpleware suite of programmes, version 7 (Synopsys Inc., Mountain View, CA, USA).<br> X-ray CT data: https://doi.org/10.5281/zenodo.3533420<br> Neutron CT data: https://doi.org/10.5281/zenodo.3533418 The FE mesh data uses the EnSight Gold file format and may be visualised using Paraview (https://www.paraview.org). Results for a thermal analysis performed with ParaFEM (https://github.com/leemargetts/parafem) are included. This data was used originally for the following publication (please cite if re-using the data):<br> Ll.M. Evans, T. Minniti, T. Barrett, A. v. Müller, L. Margetts, “Virtual qualification of novel heat exchanger components with the image-based finite element method”, e-Journal of Nondestructive Testing (NDT) ISSN 1435-4934, Issue: 2019-03, No. 23660. https://www.ndt.net/search/docs.php3?id=23660
DOI: 10.5281/zenodo.3533422
title: Finite element meshes of conceptual designs for a fusion energy heat exchange component (monoblock) for Image-Based Simulation (IBSim) of in-service conditions

description: Image-Based Simulation (IBSim) mesh and temperature analysis results:<br> Finite element meshes of conceptual designs for a fusion energy heat exchange component (monoblock). The dataset includes three meshes:<br> - CCFE_ThBr_CAD (mesh created by with a computer aided design (CAD) package)<br> - CCFE_ThBr_IBFEM (hybrid CAD and IBSim mesh, manufactured version of CCFE_ThBr_CAD)<br> - IPP_WfCu_IBFEM_3MB (hybrid CAD and IBSim mesh, tungsten fibre-copper matrix composite pipe with tungsten armour) For the the hybrid meshes, the IBSim part is generated directly from a 3D volumetric images of the real manufactured parts and as such includes microscale features introduced during the manufacturing stage. The 3D images were generated with X-ray and neutron tomography, the datasets are available at the links below. Conversion of the data to FE mesh was achieved using ScanIP, part of the Simpleware suite of programmes, version 7 (Synopsys Inc., Mountain View, CA, USA).<br> X-ray CT data: https://doi.org/10.5281/zenodo.3533420<br> Neutron CT data: https://doi.org/10.5281/zenodo.3533418 The FE mesh data uses the EnSight Gold file format and may be visualised using Paraview (https://www.paraview.org). Results for a thermal analysis performed with ParaFEM (https://github.com/leemargetts/parafem) are included. This data was used originally for the following publication (please cite if re-using the data):<br> Ll.M. Evans, T. Minniti, T. Barrett, A. v. Müller, L. Margetts, “Virtual qualification of novel heat exchanger components with the image-based finite element method”, e-Journal of Nondestructive Testing (NDT) ISSN 1435-4934, Issue: 2019-03, No. 23660. https://www.ndt.net/search/docs.php3?id=23660
DOI: 10.17632/bbv4yw43tk.1
title: Data for: Late Pleistocene human occupation in the Maloti-Drakensberg region of southern Africa: new radiocarbon dates from Rose Cottage Cave and inter-site comparisons

description: Lithic measures and modelled date ranges for five sites, with groupings for statistical comparisons.
DOI: 10.18716/nmrshiftdb2/2697
title: NMR data for (2S)-3',4'-Methylenedioxy-5,7-dimethoxyflavan
DOI: 10.5281/zenodo.3540549
title: 2C 2D STORM dataset COS7, Tub/Tom20

description: 2C 2D STORM dataset sample: COS7 cells immunostained against alpha tubulin (A647) and Tom20 (DyLight755) imaging: STORM, COT buffer, pxlsize 106 nm
DOI: 10.5281/zenodo.3540550
title: 2C 2D STORM dataset COS7, Tub/Tom20

description: 2C 2D STORM dataset sample: COS7 cells immunostained against alpha tubulin (A647) and Tom20 (DyLight755) imaging: STORM, COT buffer, pxlsize 106 nm
DOI: 10.18716/nmrshiftdb2/2736
title: NMR data for 5-Hydroxy-4-methoxy-2-naphthalenecarboxylic acid 5-O--glucopyranoside; Drosophylloside
DOI: 10.5281/zenodo.7533112
title: Hefei FTIR datasets

description: Ground-based high resolution FTIR observations of pollution/greenhouse gases at the Hefei station
DOI: 10.6084/m9.figshare.22189918
title: Data from "Sharing is living: the role of habitat heterogeneity in the coexistence of closely related species". Journal: Ecology and Evolution

description: All spreadsheets from the paper "Sharing is living: the role of habitat heterogeneity in the coexistence of closely related species", published in Ecology and Evolution.
DOI: 10.5281/zenodo.7703245
title: Wikipedia Academic Disciplines Network

description: This network is a result of scraping Wikipedia (using scrapy), starting at the Outline of Academic Disciplines and following every link until a page is reached (i.e. if an outline is reached, all the links there are followed, when a page is reached, the links there are recorded, but not followed). Each page/article visited is recorded as a node. If one page/article links to another, the nodes are connected with an edge. The edges are weighted by the number of links between the pages. An example of a weight greater than 1 is if two pages both link to each other, or if there are multiple links to the same page in an article. This process resulted in 640,031 nodes and 4,503,438 edges. The network is undirected, so each edge only appears once.
description: I make no claims to ownership of this data. I simply scraped this data from Wikipedia and organized it as a network.
DOI: 10.5281/zenodo.7703244
title: Wikipedia Academic Disciplines Network

description: This network is a result of scraping Wikipedia (using scrapy), starting at the Outline of Academic Disciplines and following every link until a page is reached (i.e. if an outline is reached, all the links there are followed, when a page is reached, the links there are recorded, but not followed). Each page/article visited is recorded as a node. If one page/article links to another, the nodes are connected with an edge. The edges are weighted by the number of links between the pages. An example of a weight greater than 1 is if two pages both link to each other, or if there are multiple links to the same page in an article. This process resulted in 640,031 nodes and 4,503,438 edges. The network is undirected, so each edge only appears once.
description: I make no claims to ownership of this data. I simply scraped this data from Wikipedia and organized it as a network.
DOI: 10.5281/zenodo.7634028
title: Trichoderma-Arabidopsis interaction by Ambient Ionization Mass Spectrometry

description: Interaction between the plant <em>Arabidopsis thaliana</em> and the fungus <em>Trichoderma atroviride</em>. Three sample groups (<em>Arabidopsis thaliana</em>, <em>Trichoderma atroviride</em> and <em>Trichoderma-Arabidopsis</em> interaction) with 3 biological replicates were monitored for 10 days, resulting in 40 points. This experiment was focused on monitoring the kinetics of the volatile organic compound (VOC) 6-Pentyl-2H-Pyran-2-One (6-PP), a molecule produced by <em>Trichoderma</em> that helps to establish interaction with plants. More details and results are available in the publication written by Torres-Ortega et al. (DOI: 10.3390/metabo12121231). Data were collected with custom 3D-printed Low-Temperature Plasma (DOI: 10.1021/acs.analchem.6b01019) ambient ionization source, coupled to an LCQ-fleet ion trap (Thermo Scientific, USA). Mass spectra were taken in full spectra at 50-500 <em>m/z</em> range, on profile mode. Each MS scan consists of 10 micros cans. Data was saved under the RAW property format of Thermo. To convert to mzML open format, Proteowizard was used.