cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25573/data.11799111
title: Yearly Reports_Barro Colorado Island

description: Yearly climate summaries for the Smithsonian Tropical Research Institute's Physical Monitoring Program 'Clearing' and Lutz and Conrad Catchment stations on Barro Colorado Island, located in the middle of Gatun Lake, in the Rep. of Panama.<br><br>This report summarises data taken from two locations: a 48 m walk-up tower located within the Lutz catchment, and a small clearing (‘El Claro’) located among several laboratory buildings. The tower, with sensors at 10 m intervals, provides a vertical meteorological transect through the forest canopy. The Lutz catchment, located on the Northeast lope of BCI, and is probably typical of many small catchment areas on the island. The catchment encompasses 9.73 ha. The Lutz catchment is located immediately southwest of the laboratory clearing and dormitory area. The Clearing is a grass-covered area located near several laboratory buildings. The station is located in the northwest corner of the Clearing in a fenced in area measuring approximately 189cm x 183cm.
DOI: 10.25573/data.11799111.v5
title: Yearly Reports_Barro Colorado Island

description: Yearly climate summaries for the Smithsonian Tropical Research Institute's Physical Monitoring Program 'Clearing' and Lutz and Conrad Catchment stations on Barro Colorado Island, located in the middle of Gatun Lake, in the Rep. of Panama.<br><br>This report summarises data taken from two locations: a 48 m walk-up tower located within the Lutz catchment, and a small clearing (‘El Claro’) located among several laboratory buildings. The tower, with sensors at 10 m intervals, provides a vertical meteorological transect through the forest canopy. The Lutz catchment, located on the Northeast lope of BCI, and is probably typical of many small catchment areas on the island. The catchment encompasses 9.73 ha. The Lutz catchment is located immediately southwest of the laboratory clearing and dormitory area. The Clearing is a grass-covered area located near several laboratory buildings. The station is located in the northwest corner of the Clearing in a fenced in area measuring approximately 189cm x 183cm.
DOI: 10.6084/m9.figshare.25013969
title: Readme

description: This study attempts to synthesize trade-offs related to sustainability in the context of integrating AI into software systems. The main aim is to support practitioners with a sustainability perspective when deciding if and how to integrate AI. This study makes the sustainability benefits and costs of integrating AI more transparent and accessible for practitioners.
DOI: 10.6084/m9.figshare.25013969.v1
title: Readme

description: This study attempts to synthesize trade-offs related to sustainability in the context of integrating AI into software systems. The main aim is to support practitioners with a sustainability perspective when deciding if and how to integrate AI. This study makes the sustainability benefits and costs of integrating AI more transparent and accessible for practitioners.
DOI: 10.6084/m9.figshare.25013981.v1
title: Supplementary Material for: Awareness and Knowledge of Stuttering Among Malaysian School-Aged Children: An Exploratory Study

description: Introduction: Knowledge and awareness of stuttering are closely associated with attitudes toward stuttering. Few studies have been conducted on the knowledge and awareness of school-aged children, and none have been conducted in Malaysia. This study aimed to: (a) determine knowledge and awareness of stuttering among Malaysian school-aged children, and (b) determine whether there are differences between age group, gender and PWS exposure groups. Methods: A cross-sectional study was conducted among 192 Malay school-aged children (mean age = 9.47, SD = 1.781) recruited via email and social media platforms. They completed a Malay version of the questionnaire devised by van Borsel et al. (1999) on various aspects of stuttering, including prevalence, onset, gender distribution, occurrence in different cultures, cause, treatment, intelligence, and heredity of stuttering. The chi-square test of independence was performed to compare the distributions of survey responses by age group, gender and PWS exposure group. Results: Around half of the school-age children had met a person who stutters, but certain aspects of their knowledge were limited. Knowledge also differed according to age and gender. Girls were more knowledgeable about stuttering than boys. Regarding stuttering treatment, younger children had more positive attitudes than older children. Participants who did not know a PWS were more likely to consult their family doctor rather than a speech-language pathologist in relation to stuttering. Conclusions: Knowledge and awareness of stuttering among Malaysian school-aged children were limited. Findings of this study could be used to develop a stuttering awareness program specific to children to increase their knowledge and awareness about stuttering.
DOI: 10.5281/zenodo.10523891
title: Longer summer seasons after fire induce permanent drought legacy-Data
DOI: 10.5281/zenodo.10523892
title: Longer summer seasons after fire induce permanent drought legacy-Data
DOI: 10.5281/zenodo.10523643
title: Pf Atlas of sexual development

description: The datasets here are a key addition to the Malaria Cell Atlas, that include short and long read single cell RNA-sequencing profiles of i) over 37,000 Plasmodium falciparum cells across intraerythrocytic asexual and sexual development of laboratory strains ii)  ~8000 P. falciparum parasites collected from four asymptomatic Malian individuals naturally infected with multiple strains. A single cell atlas comprising the laboratory dataset as well as an integrated atlas of both laboratory and field strains is generated and provided as a data resource to the malaria research community at malariacellatlas.org
DOI: 10.5281/zenodo.7965702
title: Pf Atlas of sexual development

description: <strong>The datasets here are a key addition to the Malaria Cell Atlas, that include short and long read single cell RNA-sequencing profiles of i) over 37,000 <em>Plasmodium falciparum</em> cells across intraerythrocytic asexual and sexual development of laboratory strains ii) ~1000 <em>P. falciparum</em> parasites collected from an asymptomatic Malian individual naturally infected with multiple strains. A single cell atlas comprising the laboratory dataset as well as an integrated atlas of both laboratory and field strains is generated and provided as a data resource to the malaria research community at malariacellatlas.org</strong>
DOI: 10.5281/zenodo.8139823
title: Pf Atlas of sexual development

description: <strong>The datasets here are a key addition to the Malaria Cell Atlas, that include short and long read single cell RNA-sequencing profiles of i) over 37,000 <em>Plasmodium falciparum</em> cells across intraerythrocytic asexual and sexual development of laboratory strains ii) ~1000 <em>P. falciparum</em> parasites collected from an asymptomatic Malian individual naturally infected with multiple strains. A single cell atlas comprising the laboratory dataset as well as an integrated atlas of both laboratory and field strains is generated and provided as a data resource to the malaria research community at malariacellatlas.org</strong>
DOI: 10.5281/zenodo.10515025
title: Pf Atlas of sexual development

description: The datasets here are a key addition to the Malaria Cell Atlas, that include short and long read single cell RNA-sequencing profiles of i) over 37,000 Plasmodium falciparum cells across intraerythrocytic asexual and sexual development of laboratory strains ii)  ~8000 P. falciparum parasites collected from four asymptomatic Malian individuals naturally infected with multiple strains. A single cell atlas comprising the laboratory dataset as well as an integrated atlas of both laboratory and field strains is generated and provided as a data resource to the malaria research community at malariacellatlas.org
DOI: 10.5281/zenodo.7965701
title: Pf Atlas of sexual development

description: The datasets here are a key addition to the Malaria Cell Atlas, that include short and long read single cell RNA-sequencing profiles of i) over 37,000 Plasmodium falciparum cells across intraerythrocytic asexual and sexual development of laboratory strains ii)  ~8000 P. falciparum parasites collected from four asymptomatic Malian individuals naturally infected with multiple strains. A single cell atlas comprising the laboratory dataset as well as an integrated atlas of both laboratory and field strains is generated and provided as a data resource to the malaria research community at malariacellatlas.org
DOI: 10.5883/ds-iolana
title: Co evolution of Iolana blues with their hostplants and the higher phylogeny of subtribe Scolitantidina (Lepidoptera, Lycaenidae)

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.25013771
title: Amblypygid Prey Capture Kinematics - Supplementary Information

description: Supplementary information for "The kinematics of amblypygid (Arachnida) pedipalps during predation: Extreme elongation in raptorial appendages does not result in a proportionate increase in reach and closing speed"
DOI: 10.6084/m9.figshare.25013771.v1
title: Amblypygid Prey Capture Kinematics - Supplementary Information

description: Supplementary information for "The kinematics of amblypygid (Arachnida) pedipalps during predation: Extreme elongation in raptorial appendages does not result in a proportionate increase in reach and closing speed"
DOI: 10.5883/ds-inmeg241
title: First zoeal stage of the Indian Ocean hydrothermal vent crab, Austinograea rodriguezensis Tsuchida and Hashimoto, 2002 (Decapoda: Brachyura: Bythograeidae)

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aaf0041
title: Overview of Barcode Index Number - BOLD:AAF0041

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aak2764
title: Overview of Barcode Index Number - BOLD:AAK2764

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.25012616.v1
title: Date : HRV horses during transport

description: Date : HRV horses during transport ATF; Air-conditioned truck with a full loadATS; Air-conditioned truck with a space loadN-ATF; non-air-conditioned truck with a full loadN-ATS; non-air-conditioned truck with a space load
DOI: 10.6084/m9.figshare.25013753
title: Biochar dataset corresponding to: Above and belowground functional trait response to biochar addition in seedlings of six tropical dry forest tree species.

description: Here, we conducted a greenhouse experiment to quantify effects of rates of biochar (0, 5, 10, 20, and 40 t/ha) on demographic and functional traits of six tree species commonly used in TDF restoration programs. The biochar treatments were equivalent to 0, 5, 10, 20, and 40 t/ha on the average weight of the bags filled only with soil (1406 g). The nursery bags were arranged in a factorial design (6 species × 5 treatments) with 20 replicates, to account for variation in light and temperature conditions. The seedlings were irrigated at field capacity (350 ml) twice a week and 3g of NPK (12-30-10) fertilizer was added 30 days after transplantation. After 100 days, we removed the seedlings from the nursery bags and gently washed the roots in tap water to remove substrate, prior to analysis of trait data. Since seedlings were grown for 100 days and therefore no longer depended on their seed reserves upon harvest, we acknowledge they should be formally considered saplings, although we refer to them as seedlings for simplicity.
DOI: 10.6084/m9.figshare.25013753.v1
title: Biochar dataset corresponding to: Above and belowground functional trait response to biochar addition in seedlings of six tropical dry forest tree species.

description: Here, we conducted a greenhouse experiment to quantify effects of rates of biochar (0, 5, 10, 20, and 40 t/ha) on demographic and functional traits of six tree species commonly used in TDF restoration programs. The biochar treatments were equivalent to 0, 5, 10, 20, and 40 t/ha on the average weight of the bags filled only with soil (1406 g). The nursery bags were arranged in a factorial design (6 species × 5 treatments) with 20 replicates, to account for variation in light and temperature conditions. The seedlings were irrigated at field capacity (350 ml) twice a week and 3g of NPK (12-30-10) fertilizer was added 30 days after transplantation. After 100 days, we removed the seedlings from the nursery bags and gently washed the roots in tap water to remove substrate, prior to analysis of trait data. Since seedlings were grown for 100 days and therefore no longer depended on their seed reserves upon harvest, we acknowledge they should be formally considered saplings, although we refer to them as seedlings for simplicity.
DOI: 10.5281/zenodo.10523600
title: AUPIMO benchmark: anomaly score maps

description: NOT SELF CONTAINED

This is part of github.com/jpcbertoldo/aupimo

Please cite us as

@misc{aupimo,  title = {{AUPIMO}: Redefining Visual Anomaly Detection Benchmarks with High Speed and Low Tolerance},  shorttitle = {{AUPIMO}},  author = {Bertoldo, Joao P. C. and            Ameln, Dick and            Vaidya, Ashwin and            Akçay, Samet},  year = {2024},  eprint = {2401.01984},  eprinttype = {arxiv},  primaryClass={cs.CV}}
DOI: 10.5281/zenodo.10523601
title: AUPIMO benchmark: anomaly score maps

description: NOT SELF CONTAINED

This is part of github.com/jpcbertoldo/aupimo

Please cite us as

@misc{aupimo,  title = {{AUPIMO}: Redefining Visual Anomaly Detection Benchmarks with High Speed and Low Tolerance},  shorttitle = {{AUPIMO}},  author = {Bertoldo, Joao P. C. and            Ameln, Dick and            Vaidya, Ashwin and            Akçay, Samet},  year = {2024},  eprint = {2401.01984},  eprinttype = {arxiv},  primaryClass={cs.CV}}
DOI: 10.5281/zenodo.10523908
title: Urban agriculture, nitrate, health and spatial planning

description: Data in GPKG format comprising data collected from hundreds of urban farmers in the city of Dar es Salaam in Tanzania in 2023, enabling us to study the link between the practice of this activity, the nitrate toxicity of its by-products, and spatial and environmental determinants.
DOI: 10.5281/zenodo.10523909
title: Urban agriculture, nitrate, health and spatial planning

description: Data in GPKG format comprising data collected from hundreds of urban farmers in the city of Dar es Salaam in Tanzania in 2023, enabling us to study the link between the practice of this activity, the nitrate toxicity of its by-products, and spatial and environmental determinants.
DOI: 10.5281/zenodo.10524026
title: MD python files
DOI: 10.5281/zenodo.10524027
title: MD python files
DOI: 10.57707/fmi-b2share.529adcd77c144d82a7b29841e34922a3
title: Investigating the effect of snow-ice formation on snow depth and density over Arctic sea ice

description: We investigated the effect of snow-ice formation on snow depth and density over Arctic sea ice. We coupled SnowModel-LG, a snow modeling system adapted for snow depth and density reconstruction over sea ice, with HIGHTSI, a 1-D sea ice thermodynamic model, to simulate snow-ice growth. Pan-Arctic model simulations were performed over the period 1 August 1980 through 31 July 2022. The model outputs were gridded to the 25x25 km Equal-Area Scalable Earth Grid (EASE-Grid), provided by the National Snow and Ice Data Center (NSIDC) (361 x 361 pixels). We compared snow depth and density from the coupled product (SnowModel-LG_HS) to outputs from the SnowModel-LG. 

The data set includes daily, pan-Arctic information of snow depth, snow density, snow-ice thickness and thermodynamically grown sea ice thickness from 1.8.1980 until 31.7.2022, based on SnowModel-LG_HS. Specifically, it includes the following (4) netcdf files:

1. snod.nc: Pan-Arctic snow depth based on SnowModel-LG_HS
2. sden.nc: Pan-Arctic snow density based on SnowModel-LG_HS
3. sice.nc: Pan-Arctic snow-ice thickness based on SnowModel-LG_HS
4. tice.nc: Pan-Arctic thermodynamically grown sea ice thickness based on SnowModel-LG_HS
DOI: 10.57707/fmi-b2share.fb7b51ad29484eeab913d426652d890c
title: Perseverance MEDA Atmospheric Pressure Observations - Initial Results

description: The Mars2020 Perseverance Rover landed successfully on the Martian surface on the Jezero Crater floor (18.44°N, 77.45°E) at Martian solar longitude of 5 degrees in February 2021. Since then it has produced highly valuable environmental measurements with a versatile scientific payload including the MEDA (Mars Environmental Dynamics Analyzer) suite of environmental sensors. One of the MEDA systems is the PS pressure sensor system which weighs 40 grams and has an estimated absolute accuracy of better than 3.5 Pa and a resolution of 0.13 Pa. We present initial results from the first 414 sols of Martian atmospheric surface pressure observations by the PS whose performance was found to meet its specifications. Observed sol-averaged atmospheric pressures follow an anticipated pattern of pressure variation in the course of the advancing season and are consistent with data from other landing missions. The observed daily pressure amplitude varies approximately by 2-5 % of the sol-averaged pressure, with absolute amplitude 10-35 Pa in an approximately direct relationship with airborne dust. During a regional dust storm, which began at the 135 degrees of solar longitude the daily pressure amplitude roughly doubles. The daily pressure variations were found to be remarkably sensitive to the seasonal evolution of the atmosphere. In particular analysis of the daily pressure signature revealed diagnostic information likely related to the regional scale structure of the atmosphere. Comparison of Perseverance pressure observations to data from other landers reveals the global scale seasonal behaviour of Mars' atmosphere.
description: Uploaded files:
============
There are altogether 32 files including the all the data of the results. The filenames are self-explaining, because they refer to the figures in the publication.
description: This work is published in the Journal of Geophysical Research.
DOI: 10.57707/fmi-b2share.1ce041ebbba74ca98ae1a09ddeebe945
title: Perseverance MEDA Atmospheric Pressure Observations - Initial Results

description: The Mars2020 Perseverance Rover landed successfully on the Martian surface on the Jezero Crater floor (18.44°N, 77.45°E) at Martian solar longitude of 5 degrees in February 2021. Since then it has produced highly valuable environmental measurements with a versatile scientific payload including the MEDA (Mars Environmental Dynamics Analyzer) suite of environmental sensors. One of the MEDA systems is the PS pressure sensor system which weighs 40 grams and has an estimated absolute accuracy of better than 3.5 Pa and a resolution of 0.13 Pa. We present initial results from the first 414 sols of Martian atmospheric surface pressure observations by the PS whose performance was found to meet its specifications. Observed sol-averaged atmospheric pressures follow an anticipated pattern of pressure variation in the course of the advancing season and are consistent with data from other landing missions. The observed daily pressure amplitude varies approximately by 2-5 % of the sol-averaged pressure, with absolute amplitude 10-35 Pa in an approximately direct relationship with airborne dust. During a regional dust storm, which began at the 135 degrees of solar longitude the daily pressure amplitude roughly doubles. The daily pressure variations were found to be remarkably sensitive to the seasonal evolution of the atmosphere. In particular analysis of the daily pressure signature revealed diagnostic information likely related to the regional scale structure of the atmosphere. Comparison of Perseverance pressure observations to data from other landers reveals the global scale seasonal behaviour of Mars' atmosphere.
description: Uploaded files:
============
There are altogether 32 files including the all the data of the results. The filenames are self-explaining, because they refer to the figures in the publication.
description: This work is published in the Journal of Geophysical Research.
DOI: 10.6095/k8nz-nb48
title: Abundance of Pyrodinium bahamense resting cysts in Old Tampa Bay, Florida during 2015, 2016, 2019, and 2023

description: These data were collected as part of a joint agency effort and multiple projects to monitor and understand distributions of Pyrodinium bahamense resting cysts in the sediments of Old Tampa Bay, Florida. The method of collection varied according to project and are indicated in file. Spatial sediment surveys (via grab samples) were performed in 2015, 2019, and 2023 in collaboration with the Environmental Protection Commission of Hillsborough County (EPCHC). Short sediment core samples were collected in 2015 and 2016 in collaboration with USGS as part of a project funded by Tampa Bay Environmental Restoration Fund (TBERF). Cyst abundances are provided as cysts per gram of wet sediment or cysts per cubic centimeter of wet sediment or both, depending on the project, as indicated in the file.
Sediment grab samples (spatial surveys) were performed through collaborations and existing monitoring efforts of the Environmental Protection Commission of Hillsborough County and the Florida Fish and Wildlife Conservation Commission. Sediment core data collection and analysis were supported by the Tampa Bay Environmental Research Fund in collaboration with USGS.
DOI: 10.6084/m9.figshare.22266361
title: Concatenated alignments

description: Concatenated alignment files.
DOI: 10.6084/m9.figshare.22266358
title: Locus alignments

description: Trimmed locus alignment files.
DOI: 10.6084/m9.figshare.22266349
title: Optimal gene trees

description: Maximum likelihood optimal gene trees based on analyses of locus alignments.
DOI: 10.6084/m9.figshare.22189876
title: Ultrametric trees

description: Ultrametric trees (taxa pruned)
DOI: 10.6084/m9.figshare.22189873
title: Maximum likelihood tree files

description: Maximum likelihood tree files
DOI: 10.6084/m9.figshare.22189870
title: ASTRAL species tree files

description: ASTRAL species tree files
DOI: 10.6084/m9.figshare.22189816
title: Morphological character matrix

description: Nexus formatted character matrix of weapon morphology in Coreoidea
DOI: 10.5281/zenodo.10456319
title: The data from PROBES. I. A Compendium of Deep Rotation Curves and Matched Multiband Photometry

description: We present the Photometry and Rotation Curve Observations from Extragalactic Surveys (PROBES) compendium of extended rotation curves for 3163 late-type spirals, with matching homogeneous multi-band photometry for 1677 of them. The raw data are given in the profiles.zip file. These .prof files contain the surface brightness profiles and rotation curves for each galaxy. The columns each profile are described in README_profiles. Also included are .aux files which give details of the photometry extraction with AutoProf.

The reduced data are contained in various .csv files. Each galaxy has a unique name which is given in the first column of each table. The file main_table.csv contains high level information about every galaxy including redshift, morphology, and which photometric bands are available. The model_fits.csv file contains fitting parameters for a number of parametric models which describe either the rotation curves or surface brightness profiles. The structural_parameters.csv file contains structural parameters such as the effective radius or absolute magnitude for every galaxy which has the relevant data. The columns in each table are described in the README_tables file.