cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23929719.v1
title: A meta-analysis of TACE combined with CRA versus TACE alone in the treatment of ≥5cm hepatocellular carcinoma

description: To compare the efficacy and safety of transcatheter arterial chemoembolization (TACE) combined with cryoablation (CRA) versus TACE alone in the treatment of hepatocellular carcinoma(HCC).
DOI: 10.6084/m9.figshare.27199542.v2
title: Table Data.docx

description: Our research on HIFEM (High-Intensity Focused Electromagnetic) technology explores its effects on alleviating urinary incontinence in Indonesian women. HIFEM technology works by stimulating deep pelvic floor muscles through electromagnetic energy, which causes supramaximal contractions that are difficult to achieve through voluntary effort. This technique has been gaining attention for its potential in treating conditions like stress urinary incontinence, especially in women, by strengthening pelvic floor muscles non-invasively.<br>Our research likely focuses on assessing the effectiveness, safety, and long-term benefits of this technology in the Indonesian population, considering factors like cultural or anatomical variations that may affect outcomes. It also aims to provide data on patient satisfaction, improvement in quality of life, and the impact of HIFEM as a possible alternative or adjunct to conventional pelvic floor therapies.
DOI: 10.17632/mzbshs9x8b
title: Data for: TClustVID: A Novel Machine Learning Classification Model to Investigate Topics and Sentiment in COVID-19 Tweets

description: It is generated as supplementary data in this work
DOI: 10.6084/m9.figshare.12360620.v2
title: Unstable Crystallographic & Molecular Structures for Machine Learning of System Energies

description: - <b>Augmented-QM9 molecular structures at unstable positions </b>-- augm-qm9-{train,test,valid}.json- <b>Periodic crystal structures at unstable positions</b> -- periodic-al-cu-crystal.json- <b>Finite-sized crystal structures at unstable positions</b> -- scaled-finite-crystal-{train,test,valid}.json- <b>Finite-sized crystal structures (stable positions only)</b> -- scaled-stable-crystal.json<br>
DOI: 10.6084/m9.figshare.15163914.v1
title: Diesel2p mesoscope with dual independent scan engines for flexible capture of dynamics in distributed neural circuitry

description: 'Fig01 PSF.xlsx' is the data set of the point spread function measurement.<br>'Fig2c_Ch01.zip', 'Fig2c_Ch02.zip', 'Fig03ab.zip', ' Fig03cd.zip' are the data set of the <i>in vivo </i>calcium images.
DOI: 10.6084/m9.figshare.2375797
title: An epigenome-wide association meta-analysis of prenatal maternal stress in neonates: A model approach for replication

description: Prenatal maternal stress exposure has been associated with neonatal differential DNA methylation. However, the available evidence in humans is largely based on candidate gene methylation studies, where only a few CpG sites were evaluated. The aim of this study was to examine the association between prenatal exposure to maternal stress and offspring genome-wide cord blood methylation using different methods. First, we conducted a meta-analysis and follow-up pathway analyses. Second, we used novel region discovery methods [i.e., differentially methylated regions (DMRs) analyses]. To this end, we used data from two independent population-based studies, the Generation R Study (n = 912) and the Avon Longitudinal Study of Parents and Children (ALSPAC, n = 828), to (i) measure genome-wide DNA methylation in cord blood and (ii) extract a prenatal maternal stress composite. The meta-analysis (n<sub>total</sub> = 1,740) revealed no epigenome-wide (meta <i>P</i> &lt;1.00e-07) associations of prenatal maternal stress exposure with neonatal differential DNA methylation. Follow-up analyses of the top hits derived from our epigenome-wide meta-analysis (meta <i>P</i> &lt;1.00e-04) indicated an over-representation of the methyltransferase activity pathway. We identified no Bonferroni-corrected (<i>P</i> &lt;1.00e-06) DMRs associated with prenatal maternal stress exposure. Combining data from two independent population-based samples in an epigenome-wide meta-analysis, the current study indicates that there are no large effects of prenatal maternal stress exposure on neonatal DNA methylation. Such replication efforts are essential in the search for robust associations, whether derived from candidate gene methylation or epigenome-wide studies.
DOI: 10.6084/m9.figshare.24085827.v1
title: Results

description: Learning a Stable Approximation of an Existing but Unknown Inverse Mapping: Application to the Half-Time Circular Radon Transform
DOI: 10.6084/m9.figshare.26087851.v1
title: HiGTS_2009s1

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2009s1 contains the data from January 1, 2009 to March 31, 2009.
DOI: 10.6084/m9.figshare.4758004.v3
title: Emergency Response extension for WordNet (100 terms from the UKCP lexicon)

description: Dataset that includes 100 terms from the UKCP lexicon. This is written in LMF format in order to be compatible with WordNet.<br>This resource has been developed to extend WordNet with Emergency Response (ER) terminologies and so to improve semantic matching between organisations in ER scenarios<br><br>
DOI: 10.17632/djhjjcvwz5
title: The Lower and Middle Miocene lithostratigraphy of the northern Vienna Basin (Slovakia) – supporting data

description: The dataset includes a single text file with a detailed description of all lithostratigraphic units for the Lower and Middle Miocene stratigraphic intervals, which were redefined in the accompanied manuscript, following the International Stratigraphic Guide. The information included in the file was gained trough a review of publications and manuscripts with the focus on geological mapping, petroleum, hydrogeological or geothermal prospection, or general basin analysis, stratigraphic, paleontological and geochronological research. This data file is a supplementary material for the accompanied manuscript, submitted in the Geological Society of London Special Publication entitled "The Miocene Extensional Pannonian Superbasin, Volume 1: Regional Geology" with the title of the contribution "Kováč et al.: The Miocene to Quaternary evolution of the Vienna Basin northeastern part: Geodynamics, eustasy, stratigraphy and depositional systems".
DOI: 10.6084/m9.figshare.22581016.v3
title: Student-teachers reflective journals. pdf

description: This archive contains a sample of three reflective journals that the student-teachers wrote during their teaching practicum.
DOI: 10.17632/jwzyn85b9t
title: Antiallodynic and antihyperalgesic effects of LMH-2, a new sigma-1 receptor antagonist, on the neuropathic pain of diabetic mice

description: Data Figs 1-4
DOI: 10.6084/m9.figshare.20768260.v1
title: colicin_database

description: A database of over 10,000 colicins from over 50 species of bacteria were collated from the ENA as well as including some isolates from previously published sources. A multi-FASTA file containing the collated colicin sequences was utilised to generate a custom database via the prepareref command of ARIBA v2.14.6 where prepareref removes erroneous data and runs cd-hit to cluster the sequences based on a user-defined similarity threshold (90% in our case). ARIBA was then run with the FASTQ files of all isolates and the colicin database to report which sequences were observed in each isolate.
DOI: 10.6084/m9.figshare.24492196.v1
title: Datasets for "Aquifer depletion exacerbates agricultural drought losses in the US High Plains." published in Nature Water

description: You can use these datasets to reproduce all the downloaded datasets, derived datasets, results and figures reported in a journal article titled "Aquifer depletion exacerbates agricultural drought losses in the US High Plains." The computer programs to reproduce the results are available in the following GitHub repository: https://github.com/tmieno2/Drought-Production-Risk-Aquifer.Due to file number and size limitations, not all the files generated by the computer programs were uploaded here. Please see <b>metadata.html</b> for the full list of datasets that were generated in the research project. Specifically, daily gridMET datasets and SSURGO data for individual counties are not uploaded. Note that they are not essential in reproducing the results as they can be downloaded using our codes. For those who are interested in all the datasets, please visit the following dropbox link: https://www.dropbox.com/scl/fo/bghhwlidmi7wx1ok0az5n/h?rlkey=tgbix1hp7g9np9etlo1z3biyr&dl=0
DOI: 10.6084/m9.figshare.5562730.v1
title: Supplementary Material for: Online Self-Help as an Add-On to Inpatient Psychotherapy: Efficacy of a New Blended Treatment Approach

description: <b><i>Background:</i></b> Depression is one of the most frequent and costly mental disorders. While there is increasing evidence for the efficacy of online self-help to improve depression or prevent relapse, there is little evidence in blended care settings, especially combined with inpatient face-to-face psychotherapy. Therefore, we evaluated whether an evidence-based online self-help program improves the efficacy of inpatient psychotherapy. <b><i>Methods:</i></b> A total of 229 depressed patients were randomly allocated either to an online self-help program (intervention group [IG]; Deprexis) or an active control group (CG; weekly online information on depression) in addition to inpatient psychodynamic psychotherapy. Both groups had access to their respective experimental intervention for 12 weeks, regardless of inpatient treatment duration. Reduction of depressive symptoms, as measured with the Beck Depression Inventory-II, was the primary outcome at the end of the intervention (T2). <b><i>Results:</i></b> Depressive symptoms were statistically significantly lower in the IG compared to the active CG at T2 with a moderate between-group effect size of <i>d</i> = 0.44. The same applied to anxiety (<i>d</i> = 0.33), quality of life (<i>d</i> = 0.34), and self-esteem (<i>d</i> = 0.38) at discharge from inpatient treatment (T1). No statistically significant differences were found regarding dysfunctional attitudes (<i>d</i> = 0.14) and work ability (<i>d</i> = 0.08) at T1. <b><i>Conclusions:</i></b> This is the first evidence for blended treatment combining online self-help with inpatient psychotherapy. The study opens new and promising avenues for increasing the efficacy of inpatient psychotherapy. Future studies should determine how integration of online self-help into the therapeutic process can be developed further.
DOI: 10.17632/79y7bht7tf
title: Processed Multiplexed Ion Beam Imaging (MIBI) of tumor microenvironments of 54 melanoma samples following immunotherapy

description: This dataset consists of processed results from a MIBI (Multiplexed Ion Beam Imaging) study of 54 patients with melanoma who received immunotherapy. MIBI is a highly multiplexed imaging technique that enables the simultaneous, quantitative detection of dozens of protein markers within tissue samples at sub-cellular resolution. It combines antibody-based staining with time-of-flight secondary ion mass spectrometry (ToF-SIMS) to analyze the tumor microenvironment. The 29-protein panel used in this MIBI study included markers for broad cell typing (e.g., CD45, SOX10), myeloid subsets (CD68, CD163), lymphocyte subsets (CD3, CD8), immune checkpoints (PD-1, PD-L1, LAG-3, TIM-3), and other markers (e.g., proliferation, structural markers).

After imaging on field of view (FOV) for each patient sample, the arcsinh-transformed values of the panel proteins were used in conjunction with a deep learning-based object-detection model (trained on previously segmented MIBI studies) to localize and classify the cell types within each FOV. The 'scaled_mibi_data_w_cell_gating.csv' file contains these results, where each row is for one cell identified in an FOV. This table includes cells' spatial information (x and y-coordinates and estimated area), their 29 arcsinh-transformed protein intensity measurements, and boolean columns for their cell typing. Note that these cell types are hierarchical, falling under four main categories: tumor cells, fibroblasts, smooth muscle/myofibroblasts, and immune cells.

In addition, the 'patient_info.csv' file contains some basic (non-identifying) patient characteristics (age tertile at diagnosis within the 54 patient sample, and Roman numeral stage at diagnosis), along with two clinical outcome variables: 'response_binary' and 'response_multi'. Specifically, a value of 1 in the 'response_binary' variable indicates whether the patient showed stable disease, a partial response, or remission after immunotherapy (0 then represents progressive disease); the 'response_multi' variable encodes their more granular outcome (CR = complete response, PR = partial response, SD = stable disease, PD = progressive disease).
DOI: 10.6084/m9.figshare.11590272.v1
title: Two types of three-dimensional copper-lanthanide pyridine-2,3-dicarboxylate coordination polymers from one-pot reaction

description: Two types of copper-lanthanide heterometallic coordination polymers (CPs) [Ln<sub>2</sub>Cu<sub>3</sub>(2,3-pydc)<sub>6</sub>(H<sub>2</sub>O)<sub>6</sub>]·<i>x</i>H<sub>2</sub>O [Ln = La (<b>1</b>, <i>x</i> = 8), Nd (<b>3</b>, <i>x</i> = 10), 2,3-H<sub>2</sub>pydc = pyridine-2,3-dicarboxylic acid] and [Ln<sub>2</sub>Cu<sub>2</sub>(2,3-pydc)<sub>4</sub>(NO<sub>3</sub>)(OH)(H<sub>2</sub>O)<sub>6</sub>]·2H<sub>2</sub>O [Ln = La (<b>2</b>), Nd (<b>4</b>)] were successfully synthesized by one-pot reaction under hydrothermal conditions and structurally characterized by single-crystal X-ray diffraction. CPs <b>1</b>–<b>4</b> exhibit two kinds of three-dimensional (3D) structures with different topologies. In <b>1</b> and <b>3</b>, the Cu(2,3-pydc)<sub>2</sub> and Ln<sub>2</sub>(COO)<sub>4</sub> units link each other to form a two-dimensional (2D) layer, and the adjacent 2D layers are extended by the Cu(2,3-pydc)<sub>4</sub> units into a 3D framework with one-dimensional (1D) channels. In <b>2</b> and <b>4</b>, the Ln<sup>III</sup> ions bridge the 1D chains based on 2,3-pydc and Cu<sup>II</sup> into a 2D layer, and the nitrate and hydroxyl anions connect the adjacent 2D layers to generate a 3D framework with 1D channels. The electrochemical properties of <b>1</b>–<b>4</b> were studied.
DOI: 10.6084/m9.figshare.19545169.v1
title: Tabula Muris Senis (TMS) dataset

description: Tabula Muris Senis (TMS) atlas (n = 101,045 cells, 23 mouse tissues)
DOI: 10.6084/m9.figshare.2060595.v3
title: Characterization of the Nonequilibrium Steady State of a Heterogeneous Nonlinear q-Voter Model with Zealotry (Supplementary Material)

description: Supplementary material for <em>Characterization of the Nonequilibrium Steady State of a Heteogeneous Nonlinear q-Voter Model with Zealotry</em>.Authors: <em>Andrew Mellor, Mauro Mobilia, R.K.P. Zia</em><b>Items include:</b>An illustration of the model mechanism.Stationary state evolution as a function of z.Explicit expressions of LGA matrices, F and D.Vorticity and Stream Function: Definitions and Figure 3.Comparisons between precision numerical results and simulation data.Comparisons between LGA predictions and simulation results.<b>Abstract:</b>We introduce an heterogeneous nonlinear q-voter model with two types of susceptible voters and zealots, and study its non-equilibrium properties when the population is finite and well mixed. In this two-opinion model, each individual supports one of two parties and is either a susceptible voter of type q<sub>1</sub> or q<sub>2</sub>, or is an inflexible zealot. At each time step, a q<sub>i</sub>-susceptible voter (i=1,2) consults a group of q<sub>i</sub> neighbors and adopts their opinion if all group members agree, while zealots are inflexible and never change their opinion. We show that this model violates the detailed balance whenever q<sub>1</sub>≠q<sub>2</sub>and has surprisingly rich properties. Here, we focus on the characterization of the model’s non-equilibrium stationary state (NESS) in terms of its probability distribution and currents in the distinct regimes of low and high density of zealotry. We unveil the NESS properties in each of these phases by computing the opinion distribution and the circulation of probability currents, as well as the two-point correlation functions at unequal times (formally related to a “probability angular momentum”). Our analytical calculations obtained in the realm of a linear Gaussian approximation are compared with numerical results.<b>Viewing Notes:</b>To view the supplementary materials, download all files and run index.html in a web browser (preferably Chrome).<br>
DOI: 10.6084/m9.figshare.21723716.v1
title: ELISA source data for figshare.xlsx

description: source data of ELISA test from three cohorts
DOI: 10.6084/m9.figshare.24208584.v1
title: S003.zip

description: Data for S003
DOI: 10.6084/m9.figshare.28141385.v1
title: Supplementary Material for: Pigmented Malignant Onychopapilloma of the Fingernail: Description of the “String Sign”

description: Onychopapilloma is a benign nail tumor of the nail bed and distal matrix that typically presents as isolated longitudinal erythronychia on clinical examination. In 2021, Haneke et. al described the first case of a malignant variant of onychopapilloma. We present the case of a 34-year-old female patient, Fitzpatrick type V, who presented to our specialty outpatient nail clinic with a 10-year history of a pigmented growth on the lateral nail fold of the left third fingernail that resembled a string. On histopathology, the patient’s biopsy showed significant onycholemmal squamous dysplasia with intracytoplasmic melanin pigment deposition in a background of onychopapilloma; concurrent abnormal suprabasilar nuclear staining amidst keratinocytes for Ki67 was observed. The proportion of onychopapilloma cases that develop malignant potential is currently unknown, as onychopapillomas were believed to be entirely benign until 2021. Malignant onychopapilloma often presents with longitudinal melanonychia in skin of color patients and with longitudinal erythronychia in patients with lighter phototypes. Our case highlights the importance of performing a biopsy in patients who present with atypical features of onychopapilloma, including changes in pigmentation and growth, the latter potentially presenting with the “string sign.”
DOI: 10.6084/m9.figshare.25356901.v1
title: Field Diary Notes.pdf

description: The present research aimed to understand how inequities are configured in people with visual disabilities, based on practices and perceptions of fairness/unfairness and their expression in relation to access to material goods and services. An instrumental ethnographic case study was conducted within a community-based institution
DOI: 10.6084/m9.figshare.7297754.v1
title: NicholsonRicketts2018_YieldDeficit_metadata.csv

description: Variable descriptions for "NicholsonRicketts2018_YieldDefici_data.csv"
DOI: 10.17632/6jvbbsg9wg
title: SuDSlab Lectern

description: The SuDSlab Lectern Image Database is a comprehensive collection of high-resolution images documenting various designs and configurations of SuDSlab lecterns.
DOI: 10.17632/c5swhymy5m
title: Hispanic/Latino Ethnicity in Dermatology Clinical Trials

description: Supplemental Methods for Research Letter: "Historic and Continued Under-Representation of Hispanic/Latino Ethnicity Among Dermatologic Clinical Trial Participants".
DOI: 10.17632/pbwxfgswxj
title: Generating Feynman diagrams and amplitudes with FeynArts 3

description: Abstract This paper describes the Mathematica package FeynArts used for the generation and visualization of Feynman diagrams and amplitudes. The main features of version 3 are: generation of diagrams in three levels, user-definable model files, support for supersymmetric models, and publication-quality Feynman diagrams in PostScript or LaTeX. Title of program: FeynArts Catalogue Id: ADOW_v1_0 Nature of problem Feynman-diagrammatic computations in field theory. Versions of this program held in the CPC repository in Mendeley Data ADOW_v1_0; FeynArts; 10.1016/S0010-4655(01)00290-9 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.17151461.v1
title: Supplementary Material for: Course of Stress during the Neonatal Intensive Care Unit Stay in Preterm Infants

description: <b><i>Introduction:</i></b> Understanding the course of stress during the neonatal intensive care unit stay may provide targets for interventions. Our aim was to describe the course of stress in preterm infants during the first 28 days of life, the influence of gestational age, and associations with clinical characteristics. <b><i>Methods:</i></b> In a single centre prospective cohort study, we included infants with a gestational age &lt;30 weeks and/or birth weight &lt;1,000 g. We measured stress over the first 28 days using the Neonatal Infant Stressor Scale (NISS). We plotted daily NISS total and subcategory scores by gestational age. The subcategories were (1) nursing, (2) skin-breaking, (3) monitoring and imaging, and (4) medical morbidity-related scores. We assessed associations of cumulative NISS scores over the first 7, 14, and 28 days with clinical characteristics using regression analyses. <b><i>Results:</i></b> We included 45 infants, with a median gestational age of 27 weeks. The mean daily NISS score was 66.5 (SD 8.7), with highest scores in the first 7 days of life. Scores decreased the slowest for the lowest gestational ages, in particular for nursing scores, rather than skin-breaking, monitoring and imaging, and medical morbidity-related scores. Adjusted for gestational age, infants with lower Apgar scores, sepsis, intraventricular haemorrhages, and on mechanical ventilation had significantly higher cumulative NISS scores at 7, 14, and 28 days. <b><i>Conclusion:</i></b> NISS scores varied greatly within infants and over time, with the highest mean scores in the first week after birth. The course of declining NISS scores in the first 28 days depended on gestational age at birth.
DOI: 10.6084/m9.figshare.19443521.v1
title: Orthoparalogs and paralogs of WGD1

description: Orthoparalogs of WGD1 used in this study. It is a list of all genes that have WGD1 paralogs (within each species) and orthologs across all species - <em>P. tetraurelia</em>, <em>P. biaurelia</em>, <em>P. sexaurelia</em>, and <em>P. caudatum</em>. <br> These files were used to perform analyses in the manuscript - "<strong>A population-genetic lens into the process of gene loss following whole-genome duplication"</strong>.
DOI: 10.6084/m9.figshare.23530554.v1
title: LC-MS/MS data for 15-30 nt small RNA modification

description: Data deposited here include different type of RNA modifications examined by LC-MS/MS (liquid chromatography-tandem mass spectrometry). Different types of RNA modifications in15-30 nt RNA fractions from various tissues are processed for LC-MS/MS analysis. The results of RNA samples are identified as Sample-01 to Sample-03 for mouse liver; Sample-04, Sample-07 and Sample 08 for mouse spleen; Sample-09 to Sample 11 for Hepa 1-6 cell; Sample-12 to Sample-14 for Hep G2 cell; Sample-05, Sample-34 and Sample-35 for synthetic RNA, P-RNA10-cP (P-CUCAGUUGAUCACACAUGAUCCUAUGU-cP); Sample-06, Sample-36 and Sample-37 for for synthetic RNA, P-RNA17-cP (P-GUGGAACUCAGACCUAAACGG-cP). The results of nucleotide standards are identified as Sample-15 to Sample-28.
DOI: 10.6084/m9.figshare.24197907.v1
title: Supplementary Materials.docx

description: Fig. S1: The total ion chromatograms of the QC samples in POS (A) and NEG (B) modes; Fig. S2: The correlation Plot (A) and PCA model control chart (B) of QC samples; Table S1 The 741 lipids identified in HHM and KHM; Table S2 Benefits of lipid classes; Table S3 The 28 DELs between HHM and KHM.