cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13902094.v1
title: Natural history and population dynamics of the subsocial tortoise beetle <i>Omaspides</i> (<i>Paromaspides</i>) <i>brunneosignata</i> Boheman 1854 (Coleoptera: Chrysomelidae: Cassidinae)

description: Herbivorous insects have their density limited by biotic and abiotic factors, which influence their survival. For subsocial tortoise beetles (Chrysomelidae: Cassidinae) little is known about natural history and what factors affect their densities, although they are promising models for ecological and evolutionary studies. We described (1) the biology, behaviour and natural enemies of <i>Omaspides</i> (<i>P</i>.) <i>brunneosignata</i> Boheman 1854 (Cassidinae: Mesomphaliini); (2) its population density, and (3) the possible correlation between its density and climatic factors (temperature and precipitation) and host plant, <i>Ipomoea syringifolia</i> Meisn. 1869 (Convolvulaceae). The study was conducted in the Floresta Nacional de Passa Quatro, Minas Gerais, Brazil, from: October/2010 to May/2011, to investigate the species life cycle and the population dynamics, correlating the density to the climatic variables and from October/2016 to January/2018, when population dynamics was monitored again, and the density was correlated to the climatic variables and phenology of the host plant. Parental care was observed only by the female of <i>O</i>. (<i>P</i>.) <i>brunneosignata</i>, which cares for the offspring for approximately 48 days, the total duration of immature development. Maternal care was fundamental in the egg stage, because in the absence of the female, all the egg masses were predated, mainly by ants. Immatures were predated and/or parasitised by Hymenoptera (ants, wasps) and Coccinellidae beetles. <i>Omaspides</i> (<i>P</i>.) <i>brunneosignata</i> is a bivoltine species, being abundant during the hot and rainy months and not being observed in the dry and cold season, a similar pattern to that of other cassidines of mountainous tropical areas in Brazil. The density did not correlate with the climatic variables or with the leaf density of the host plant. Other factors are discussed as possible causes for the population fluctuation of the species.
DOI: 10.6084/m9.figshare.13902094
title: Natural history and population dynamics of the subsocial tortoise beetle <i>Omaspides</i> (<i>Paromaspides</i>) <i>brunneosignata</i> Boheman 1854 (Coleoptera: Chrysomelidae: Cassidinae)

description: Herbivorous insects have their density limited by biotic and abiotic factors, which influence their survival. For subsocial tortoise beetles (Chrysomelidae: Cassidinae) little is known about natural history and what factors affect their densities, although they are promising models for ecological and evolutionary studies. We described (1) the biology, behaviour and natural enemies of <i>Omaspides</i> (<i>P</i>.) <i>brunneosignata</i> Boheman 1854 (Cassidinae: Mesomphaliini); (2) its population density, and (3) the possible correlation between its density and climatic factors (temperature and precipitation) and host plant, <i>Ipomoea syringifolia</i> Meisn. 1869 (Convolvulaceae). The study was conducted in the Floresta Nacional de Passa Quatro, Minas Gerais, Brazil, from: October/2010 to May/2011, to investigate the species life cycle and the population dynamics, correlating the density to the climatic variables and from October/2016 to January/2018, when population dynamics was monitored again, and the density was correlated to the climatic variables and phenology of the host plant. Parental care was observed only by the female of <i>O</i>. (<i>P</i>.) <i>brunneosignata</i>, which cares for the offspring for approximately 48 days, the total duration of immature development. Maternal care was fundamental in the egg stage, because in the absence of the female, all the egg masses were predated, mainly by ants. Immatures were predated and/or parasitised by Hymenoptera (ants, wasps) and Coccinellidae beetles. <i>Omaspides</i> (<i>P</i>.) <i>brunneosignata</i> is a bivoltine species, being abundant during the hot and rainy months and not being observed in the dry and cold season, a similar pattern to that of other cassidines of mountainous tropical areas in Brazil. The density did not correlate with the climatic variables or with the leaf density of the host plant. Other factors are discussed as possible causes for the population fluctuation of the species.
DOI: 10.6084/m9.figshare.13728274.v2
title: dot500_LMM

description: Supplementary Material
DOI: 10.5523/bris.1x2rxzq7q9xcv22osl6vpg7bxp
title: Liquid Metal Logic

description: Included here are data to support the paper: M. Garrad, H.Y. C, A. T. Conn, H. Hauser, J. Rossiter, Liquid Metal Logic for Soft Robotics. IEEE Robotics and Automation Letters (2021).
DOI: 10.6084/m9.figshare.12863759
title: Membrane Binding analysis of select RW heptapeptides

description: Data from quartz crystal microbalance experiments used to analyse binding to lipid membranes of RW heptapeptides. <br>This folder contains both the raw data files and list of extracted binding values.<br>Phospholipid 1,2-dioleoyl-sn-glycero-phosphocholin (DOPC) and 1,2-dioleoyl-<i>sn</i>-glycero-3-phospho-<i>rac</i>-(1-glycerol) (DOPG) were obtained from Avanti Polar Lipids Inc (Alabama, USA). Neutral lipid bilayers were formed from vesicles composed entirely of DOPC, whilst anionic bilayers were composed of DOPC and DOPG at a ratio of 4:1 respectively. Lipids were dissolved in chloroform in a glass vial and then dried to a film under nitrogen gas. The lipids were then resuspended in HEPES buffer with 150 mM NaCl at 1 mg/ml and frozen at -80 °C for 30 minutes. This suspension was thawed, before sonication at 10 Hz in 6 to 10 bursts, each lasting 1 minute (MSE Soniprep 150 plus; MSE Centrifuges Heathfield, UK). The size of the resulting vesicles was assessed using DLS to verify the vesicles were of a target diameter of 30 nm (Zetasizer NanoS; Malvern Instruments Ltd. Malvern, UK.) and the suspension was stored in 200 µl aliquots 4 °C and used for experiments within two weeks of preparation.<br>Membrane-peptide interactions were assessed using a quartz crystal microbalance with energy dissipation monitoring (QCMD) (Q-Sense Omega; Biolin Scientific. Manchester, UK); a subset of heptapeptides (n=31) was analysed, which form the 21 pairs of peptides that had the largest differences in IC50 values whilst differing by only a single substitution in the peptide sequence. The stock vesicle suspension was diluted 1 in 5 with HEPES, and then 10 µl of 1 M CaCl<sub>2</sub> was added. SiO<sub>2</sub> sensors were cleaned using UV/Ozone (Bioforce Nano Procleaner) and lipid bilayers were prepared by depositing 0.2 mg/ml vesicle suspension at a rate of 25 µl/minute for 5 min, followed by removal of excess lipid by adding HEPES buffer onto the chip at 25 µl/minute for 5 minutes. The frequency shift of the quartz chip was monitored throughout to ensure that the lipid bilayer had formed correctly with a frequency of -25 Hz. Once a stable bilayer had been formed, peptide solutions at 20 µM (chosen due to its location centrally within the IC50 distributions of the peptides) in HEPES buffer were deposited onto the bilayer at a rate of 20 µl/minute for 9 minutes. Next, HEPES buffer was added at a rate of 25 µl/minute for 5 minutes, to remove any weakly bound or unbound peptide. Frequency and energy dissipation changes were recorded using Q-soft and the frequency shift in the 5<sup>th</sup> octave was converted to mass shift using Q-Tools software (Q-sense Omega, BiolinScientific/ Q-Sense, Sweden). The mass change between the stable bilayer and the end of the final washing step was then used to determine the amount of peptide bound to the membrane. The R package<i> Changepoints</i> (version 2.2.2) was used to determine the average mass of peptide bound to the bilayer at each step. 2 independent experiments were performed with two technical replicates for each.
DOI: 10.6084/m9.figshare.12847148
title: Dynamic light scattering data for RW heptapeptides

description: Dynamic light scattering analysis data of RW heptapeptides in solution at 800 µM.<br> Peptide stock solutions were prepared at 800 µM in PBS with 5% v/v DMSO. These were subjected to centrifugation at 2000 <i>g</i> for 5 minutes at 20°C (Eppendorf 5810R; Eppendorf, Germany) to remove dust and excessively large aggregates. 150 µl of the supernatant was transferred to a quartz cuvette and the particle size distribution at 20 °C was determined using dynamic light scattering (DLS) (Zetasizer NanoS; Malvern Instruments Ltd. Malvern, UK.). The number distribution (number of aggregates observed per aggregate diameter) from six technical repeats over two independent experiments was then used to determine the mean aggregate size of each peptide across the 12 replicates. Aggregates were then categorized into 3 classes, those producing small aggregates (&lt;10 nm diameter), moderate aggregates (diameter between 10 and 10<sup>4</sup> nm) or large aggregates (&gt;10<sup>4 </sup>nm diameter).
DOI: 10.6084/m9.figshare.12847148.v1
title: Dynamic light scattering data for RW heptapeptides

description: Dynamic light scattering analysis data of RW heptapeptides in solution at 800 µM.<br> Peptide stock solutions were prepared at 800 µM in PBS with 5% v/v DMSO. These were subjected to centrifugation at 2000 <i>g</i> for 5 minutes at 20°C (Eppendorf 5810R; Eppendorf, Germany) to remove dust and excessively large aggregates. 150 µl of the supernatant was transferred to a quartz cuvette and the particle size distribution at 20 °C was determined using dynamic light scattering (DLS) (Zetasizer NanoS; Malvern Instruments Ltd. Malvern, UK.). The number distribution (number of aggregates observed per aggregate diameter) from six technical repeats over two independent experiments was then used to determine the mean aggregate size of each peptide across the 12 replicates. Aggregates were then categorized into 3 classes, those producing small aggregates (&lt;10 nm diameter), moderate aggregates (diameter between 10 and 10<sup>4</sup> nm) or large aggregates (&gt;10<sup>4 </sup>nm diameter).
DOI: 10.6084/m9.figshare.12821723.v1
title: Analytical ultracentrifugation data for 3 select peptides at 80 µM

description: text files showing analytical ultracentrifugation data for 3 specific peptides at 80 µM which exhibited aggregation at 800 µM.<br>Peptide solutions were prepared at 800 µM in PBS with 5% v/v DMSO, along with subsequent dilution in the same diluent at 80 µM. Sedimentation equilibrium experiments were performed at 20°C using an analytical ultracentrifuge (ProteomLab XL-A; Beckman Coulter. Brea, USA). Double carbon-epoxy cells were used to house the sample and reference buffer, and the samples were subjected to centrifugation at 50,000 <i>g</i> for 14- hours. The absorbance across the cell was measured at 280 nm at regular intervals during the run to ascertain when equilibrium had occurred. Molecular masses at equilibrium were determined as a single ideal species using the software Heteroanalysis. Data shown is from single independent experiments.
DOI: 10.6084/m9.figshare.12821723
title: Analytical ultracentrifugation data for 3 select peptides at 80 µM

description: text files showing analytical ultracentrifugation data for 3 specific peptides at 80 µM which exhibited aggregation at 800 µM.<br>Peptide solutions were prepared at 800 µM in PBS with 5% v/v DMSO, along with subsequent dilution in the same diluent at 80 µM. Sedimentation equilibrium experiments were performed at 20°C using an analytical ultracentrifuge (ProteomLab XL-A; Beckman Coulter. Brea, USA). Double carbon-epoxy cells were used to house the sample and reference buffer, and the samples were subjected to centrifugation at 50,000 <i>g</i> for 14- hours. The absorbance across the cell was measured at 280 nm at regular intervals during the run to ascertain when equilibrium had occurred. Molecular masses at equilibrium were determined as a single ideal species using the software Heteroanalysis. Data shown is from single independent experiments.
DOI: 10.5517/ccdc.csd.cc278tjw
title: CCDC 2064058: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc278tkx
title: CCDC 2064059: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc278tly
title: CCDC 2064060: Experimental Crystal Structure Determination

description: Related Article: W. Clegg, R.W. Harrington|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc278vq3
title: CCDC 2064095: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Emilio L. Ghisalberti|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc278vr4
title: CCDC 2064096: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Emilio L. Ghisalberti|2021|CSD Communication|||
DOI: 10.5281/zenodo.4584874
title: gene_location

description: This is a gene_location data set, that is used in a web application called data-driven hypothesis. It contains data for gene locations on chromosomes.
description: raw code to generate the data is at www.github.com/matthewhirschey/ddh/generate_gene_location.R
DOI: 10.5281/zenodo.4584873
title: gene_location

description: This is a gene_location data set, that is used in a web application called data-driven hypothesis. It contains data for gene locations on chromosomes.
description: raw code to generate the data is at www.github.com/matthewhirschey/ddh/generate_gene_location.R
DOI: 10.15468/dmxu9r
title: The Mesozoic Family Eremochaetidae (Diptera: Brachycera) in Burmese amber and Relationships of Archisargoidea: Brachycera in Cretaceous Amber, Part VIII

description: This dataset contains the digitized treatments in Plazi based on the original journal article Grimaldi, David A., Barden, Phillip (2016): The Mesozoic Family Eremochaetidae (Diptera: Brachycera) in Burmese amber and Relationships of Archisargoidea: Brachycera in Cretaceous Amber, Part VIII. American Museum Novitates 2016 (3865): 1-32, DOI: 10.1206/3865.1, URL: http://www.bioone.org/doi/10.1206/3865.1
DOI: 10.6084/m9.figshare.14169950
title: Datafile_ETSPL_SnapProbe_.xlsx

description: Stimuli thresholds for 50 ears.
DOI: 10.6084/m9.figshare.14169950.v1
title: Datafile_ETSPL_SnapProbe_.xlsx

description: Stimuli thresholds for 50 ears.
DOI: 10.5281/zenodo.4451966
title: MAJA look-up tables for Sentinel-2 A&B, Venus and Landsat-8 sensors, for default continental model

description: The archive contains the Look-up tables used by MAJA atmospheric correction software, used to process Sentinel-2 A&B, Venus and Landsat-8 sensors. These look-up tables correspond to the aerosol types for the default continental model. Current version history (from 06/2019 onwards): * Version 1.0 Reformatted all files * Version 1.1 Added compatibility to Maja 4.2 * Version 1.2 Update Venus LUT to correct anomalies Former version history (until 06/2019): * Version 1.1 has new LUT for water vapour estimates, which corrects for a bias observed for large water vapour contents (above 2.5 g/cm2) * Version 1.2 just changed the Folder name for a better integration with Start_maja. * Version 1.3 added the Header files
DOI: 10.25934/00005789.0
title: Available IPD datapackage for study 'An Exploratory Phase II, Single-Arm, Multicenter Study to Evaluate the Efficacy and Safety of the Combination of Pertuzumab and Herceptin (Trastuzumab) in Patients With HER2-Positive Metastatic Breast Cancer'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005789.1
title: IPD datapackage for study 'An Exploratory Phase II, Single-Arm, Multicenter Study to Evaluate the Efficacy and Safety of the Combination of Pertuzumab and Herceptin (Trastuzumab) in Patients With HER2-Positive Metastatic Breast Cancer' and research request: 'Predictors of therapeutic and adverse effects of medicines used in the treatment of breast cancer'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.6084/m9.figshare.13655444
title: Colocalization analysis of polycystic ovary syndrome to identify potential disease-mediating genes and proteins

description: Full results to the article by Censin <i>et al.:</i><br>Censin, J.C., Bovijn, J., Holmes, M.V. <i>et al.</i> Colocalization analysis of polycystic ovary syndrome to identify potential disease-mediating genes and proteins. Eur J Hum Genet (2021). https://doi.org/10.1038/s41431-021-00835-8<br>
DOI: 10.6084/m9.figshare.13655444.v1
title: Colocalization analysis of polycystic ovary syndrome to identify potential disease-mediating genes and proteins

description: Full results to the article by Censin <i>et al.:</i><br>Censin, J.C., Bovijn, J., Holmes, M.V. <i>et al.</i> Colocalization analysis of polycystic ovary syndrome to identify potential disease-mediating genes and proteins. Eur J Hum Genet (2021). https://doi.org/10.1038/s41431-021-00835-8<br>
DOI: 10.5281/zenodo.4584934
title: Contact problem

description: .
DOI: 10.15468/q5hef7
title: Records of the Barracuda Sphyraena qenie from Japan, with Notes on the Taxonomic Status of Sphyraena nigripinnis (Teleostei: Sphyraenidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Miki, Ryohei, Hata, Harutaka, Motomura, Hiroyuki (2019): Records of the Barracuda Sphyraena qenie from Japan, with Notes on the Taxonomic Status of Sphyraena nigripinnis (Teleostei: Sphyraenidae). Species Diversity 24 (1): 23-27, DOI: 10.12782/specdiv.24.23, URL: http://dx.doi.org/10.12782/specdiv.24.23
DOI: 10.5281/zenodo.4585091
title: qdgc India

description: QDGC tables delivered in geopackage file<br> - - - - - - - - - - - - - - - - - - - - - -<br> QDGC represents a way of making (almost) equal area squares covering a specific area to represent specific qualities of the area covered. The squares themselves are based on the degree squares covering earth. Around the equator we have 360 longitudinal lines , and from the north to the south pole we have 180 latitudinal lines. Together this gives us 64800 segments or tiles covering earth.<br> <br> <br> Within each geopackage file you will find a number of tables with these names:<br> -tbl_qdgc_01<br> -tbl_qdgc_02<br> -tbl_qdgc_03<br> -tbl_qdgc_04<br> -tbl_qdgc_05<br> -etc<br> <br> <br> The attributes for each table are:<br> qdgc Unique Quarter Degree Grid Cell reference string<br> level_qdgc QDGC level<br> cellsize degrees decimal degree for the longitudal and latitudal length of the cell<br> lon_center Longitude center of the cell<br> lat_center Latitudal center of the cell<br> area_km2 Calculated area for the cell<br> geom Geometry<br> <br> <br> Metadata<br> --------<br> Geodata GCS_WGS_1984<br> Datum: D_WGS_1984<br> Prime Meridian: 0<br> <br> <br> Areas are calculated with different versions of Albers Equal Area Conic using the PostGIS function st_area. For the African continent I have used Africa Albers Equal Area Conic which will look like this:<br> - st_area(st_transform(geom, 102022))/1000000)<br> <br> <br> Conditions<br> ----------<br> Delivered to the user as-is. No guarantees. If you find errors, please tell me and I will try to fix it. Suggestions for improvements can be addressed to the github repository: https://github.com/ragnvald/qdgc<br> <br> <br> Thankyou!<br> --------<br> The work has over the years been supported and received advice and moral support from many organisations and stakeholders. Here are some of them:<br> - TAWIRI (http://tawiri.or.tz/)<br> - Dept of Biology, NTNU, Norway<br> - Norwegian Environment Agency<br> - Eivin Røskaft, Steven Prager, Howard Frederick, Julian Blanc, Honori Maliti, Paul Ramsey<br> <br> <br> References<br> ----------<br> * http://en.wikipedia.org/wiki/QDGC<br> * http://www.mindland.com/wp/projects/quarter-degree-grid-cells/about-qdgc/<br> * http://en.wikipedia.org/wiki/Lambert_azimuthal_equal-area_projection<br> * http://www.safe.com
DOI: 10.5281/zenodo.4585090
title: qdgc India

description: QDGC tables delivered in geopackage file<br> - - - - - - - - - - - - - - - - - - - - - -<br> QDGC represents a way of making (almost) equal area squares covering a specific area to represent specific qualities of the area covered. The squares themselves are based on the degree squares covering earth. Around the equator we have 360 longitudinal lines , and from the north to the south pole we have 180 latitudinal lines. Together this gives us 64800 segments or tiles covering earth.<br> <br> <br> Within each geopackage file you will find a number of tables with these names:<br> -tbl_qdgc_01<br> -tbl_qdgc_02<br> -tbl_qdgc_03<br> -tbl_qdgc_04<br> -tbl_qdgc_05<br> -etc<br> <br> <br> The attributes for each table are:<br> qdgc Unique Quarter Degree Grid Cell reference string<br> level_qdgc QDGC level<br> cellsize degrees decimal degree for the longitudal and latitudal length of the cell<br> lon_center Longitude center of the cell<br> lat_center Latitudal center of the cell<br> area_km2 Calculated area for the cell<br> geom Geometry<br> <br> <br> Metadata<br> --------<br> Geodata GCS_WGS_1984<br> Datum: D_WGS_1984<br> Prime Meridian: 0<br> <br> <br> Areas are calculated with different versions of Albers Equal Area Conic using the PostGIS function st_area. For the African continent I have used Africa Albers Equal Area Conic which will look like this:<br> - st_area(st_transform(geom, 102022))/1000000)<br> <br> <br> Conditions<br> ----------<br> Delivered to the user as-is. No guarantees. If you find errors, please tell me and I will try to fix it. Suggestions for improvements can be addressed to the github repository: https://github.com/ragnvald/qdgc<br> <br> <br> Thankyou!<br> --------<br> The work has over the years been supported and received advice and moral support from many organisations and stakeholders. Here are some of them:<br> - TAWIRI (http://tawiri.or.tz/)<br> - Dept of Biology, NTNU, Norway<br> - Norwegian Environment Agency<br> - Eivin Røskaft, Steven Prager, Howard Frederick, Julian Blanc, Honori Maliti, Paul Ramsey<br> <br> <br> References<br> ----------<br> * http://en.wikipedia.org/wiki/QDGC<br> * http://www.mindland.com/wp/projects/quarter-degree-grid-cells/about-qdgc/<br> * http://en.wikipedia.org/wiki/Lambert_azimuthal_equal-area_projection<br> * http://www.safe.com
DOI: 10.6084/m9.figshare.13190744
title: Mass Spectrometry analysis of glycolipids from resting and activated Tregs

description: Glycolipids from resting and activated Tregs were isolated, permethylated and analysed by MALDI-TOF mass spectrometry. The data were acquired in the form of [M+Na]+ ions. Peaks were annotated according to the molecular weight, biosynthetic pathways and MS/MS analysis.
DOI: 10.6084/m9.figshare.13190744.v2
title: Mass Spectrometry analysis of glycolipids from resting and activated Tregs

description: Glycolipids from resting and activated Tregs were isolated, permethylated and analysed by MALDI-TOF mass spectrometry. The data were acquired in the form of [M+Na]+ ions. Peaks were annotated according to the molecular weight, biosynthetic pathways and MS/MS analysis.