cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gb794/5
title: LR_KleptoARS

description: Transformed data used in the linear regression assessing the relationship between the annual reproductive success of female leopards and the proportion of kills lost to kleptoparasitism.
DOI: 10.5061/dryad.j4594/1
title: Woehrl etal 2017 DATA

description: Woehrl_etal_2017_DATA.zip contains Cataglyphis fortis locomotion data in 1) data.mat (MATLAB Version 8.6.0.267246 R2015b): weight-specific leg impulses at different slopes; ground reaction force; trajectories of petiole, tarsi and neck-thorax joint; body masses; 2) MATLAB script index.m; 3) HTML file with a sample video and figures
DOI: 10.5061/dryad.jr48p/1
title: raw logger records

description: Raw data recorded at 65 automated feeding stations across Wytham Woods. Data loggers recorded up to three records per second. Ring column contains a unique ID for each individual bird.
DOI: 10.5061/dryad.jr48p/2
title: individual attributes and parameters for PCA

description: One row per individual per date, with individual attributes and PCA parameters. Ring column contains a unique ID for each individual bird. dist_to_terr contains the distance in metres between the feeding station and the nest box used by the bird in the subsequent spring breeding season. visits_by_others contains the number of visits by other tagged individuals (great tits and blue tits) at the same site on the same date. The final six columns are the parameters used in the principal component analysis (PCA). Bout lengths and bout intervals are in seconds.
DOI: 10.5061/dryad.m3244/1
title: BeyerandHambright2017

description: This file includes life history data from the two-generation switching experiment. Rotifer mothers were raised on one of two foods, then their offspring were raised on either the same or the opposite food. We measured age-specific fecundity and survival. Also included in this file are monitoring data for chlorophyll and phycocyanin from Lake Thunderbird during the summer of 2016, used for the autocorrelation analysis reported in our paper.
DOI: 10.5061/dryad.nh044/1
title: Supplementary Methods, Results, Tables, and Figures
DOI: 10.5061/dryad.q3j60/1
title: ComDataMatrix.20m

description: The community data matrix from the study with 20x20 quadrats as rows and species as columns.
DOI: 10.5061/dryad.sv72c/1
title: Allozyme genotypes of Dyckia Brevifolia

description: Allozyme genotypes of reproductive rosettes and mating system of Dyckia brevifolia Baker.
DOI: 10.5061/dryad.t2850/1
title: Characterization of pathogen specificity and of the immune effectors associated to immune priming within and across generation in Tenebrio molitor

description: The seven data files provided correspond to two separate sets of three successive experiments to study immune priming within and across generations in Tenebrio molitor. Each set of experiments aimed to test for specificity of resistance to different bacteria and examined the immune effectors involved in each type of immune priming. Individually primed (JAE-2016-00718-IndivPrimingSurvival) or maternally primed insects (JAE-2016-00718-TGIPSurvival) with inactivated bacteria (Priming treatment or Maternal priming treatment, respectively; Bt: Bacillus thuringiensis, Ec: Escherichia coli, Sa: Staphylococcus aureus, Se: Serratia entomophila or PBS: Phosphate Buffer Saline solution), were then infected (Infection treatment and Offspring infection treatment, respectively) with the same bacteria used for the priming treatments, but alive. Survival was recorded for 14 days post infection. Furthermore, development time of maternally primed offspring was recorded (JAE-2016-00718-TGIPLarvalDevelopment).
Changes in immune parameters of T. molitor caused by individual (JAE-2016-00718-IndivPrimingImmuneEffectors) or maternal immune priming (JAE-2016-00718-TGIPImmuneEffectors) were tested by repeated measures before and 3 days after an immune challenge, with either inactivated B. thuringiensis or S. entomophila. Changes in hemocyte concentration (Hemocyte), both the activity of naturally activated phenoloxidase enzymes only (PO) and the activity of the proenzymes in addition to that of naturally activated phenoloxidase enzymes (Total-PO), and antibacterial peptide activity (ZI) were measured for each sample before and after the immune challenge.
Finally, we tested survival of primed T. molitor adults (JAE-2016-00718-IndivPrimingPhagoBeads) and survival of offspring from primed mother (JAE-2016-00718-TGIPPhagoBeads) to bacterial infection, when phagocytosis was blocked by the injection of polystyrene beads (Beads injection treatment). Insects were individually or maternally primed with either B. thuringiensis (Bt) or S. entomophila (Se).
DOI: 10.5061/dryad.td8nb/1
title: Beach seine catches of juvenile cod

description: Beach seine catches of juvenile Atlantic cod (Gadus morhua), with ages determined by length-frequency distributions. Columns are 1) Region or Fjord, 2) Station, 3) Year, 4) Catch of age-0 cod, 5) Catch of age-1 cod.
DOI: 10.5061/dryad.v7f76/3
title: Concatenated alignments of UCEs

description: Concatenated alignments and charsets for the 95p and 75p matrices used in ExaBayes and RAxML analyses, as well as best-fit partitioning schemes from Partition Finder and RY-coded matrices.
DOI: 10.5061/dryad.v7f76/4
title: ASTRAL files

description: Input and output files for all ASTRAL analyses of 75p and 95p matrices
DOI: 10.5061/dryad.v7f76/5
title: Phylogenetic Trees

description: Files containing all trees presented in the publication
DOI: 10.5061/dryad.v7f76/6
title: Trinity Assemblies

description: De novo Trinity assemblies of raw-reads for all individuals included in our published study.
DOI: 10.5061/dryad.v7f76/7
title: ExaBayes output

description: Input and output files for the ExaBayes analyses of the 75p and 95p datasets
DOI: 10.5061/dryad.vb724/1
title: High light data, figure 1, 2, 3a

description: Data from high light experiment performed without DBMIB, used to generate figure 1, 2 and 3a
DOI: 10.5061/dryad.vb724/2
title: Anaerobic data, figure 1, 2, 3a

description: Data from anaerobic experiment, used in figure 1, 2, and 3a
DOI: 10.5061/dryad.vb724/3
title: High light + DBMIB data, figure 1, 2, 3a

description: Data from high light experiment performed with DBMIB, used in figure 1, 2, and 3a
DOI: 10.5061/dryad.vb724/4
title: Light_pulse_intensity_experiment_figure_3b

description: Data from experiment investigating the effect of light pulse intensity, used to generate figure 3b
DOI: 10.5061/dryad.05st3/1
title: Relative Abundance of Operational Taxonomic Units (OTU) from all microbial samples associated with Exaiptasia pallida

description: This file contains the relative abundance of OTUs found in each sample analyzed.
DOI: 10.5061/dryad.16vc0/1
title: Functional analyses in Cochranella granulosa & Teratohyla pulverata

description: Zip contains a folder for each of three experiments of maternal care: maternal removal experiments, katydid predation experiments, and natural history of maternal clutch hydration.
DOI: 10.5061/dryad.16vc0/2
title: Phylogenetic analyses

description: Zip contains files used to estimate an ultrametric phylogeny of the Centrolenidae in BEAST V2. Files include a concatenated sequence matrix for the 10 genes used (Alignment), pooled runs from BEAST analyses for 10,001 trees, and the summarized MMC tree.
DOI: 10.5061/dryad.16vc0/3
title: Comparative analyses of caring sex & duration

description: Zip folder contains files used to estimate ancestral caring sex (39spp), and ancestral care duration (48spp), and correlational analyses of discrete states (39 spp) & continuous care durations during embryonic development (15 spp). We also estimated care states in unobserved species: in these files each unknown spp was allowed to exhibit all two/three potential states. We ran similar analyses in R phytools using stochastic character mapping; for those we wrote a simple for loop to assign unknown taxa an equal prior for each of three states (contact J. Delia for script).
DOI: 10.5061/dryad.1rv58/1
title: Data

description: Raw data associated with all figures, tables and analyses.
DOI: 10.5061/dryad.20f5m/1
title: phenotypes

description: This is phenotype data used in this study.
DOI: 10.5061/dryad.20f5m/2
title: pedigree_maskedID

description: This is pedigree file.
DOI: 10.5061/dryad.2426m/3
title: KCHA2.2_supercell_GCMC_cubic

description: Crystallographic Information File (CIF) for a potassium exchange chabazite with a Si/Al ratio of 2.2, in a 3 x 3 x 3 supercell for GCMC calculations, in cubic structure.
DOI: 10.5061/dryad.3344d/2
title: Kennett_et_al_2016_NCOMMS_Dryad_3344d_
DOI: 10.5061/dryad.36rs0/1
title: Meteorology of Java Indonesia

description: This data contains daily precipitation, minimum temperature, maximum temperature and wind speed over Java, Indonesia from 1985 - 2014. It has 707 grids/files over the island.
DOI: 10.5061/dryad.36rs0/2
title: Interpolation code

description: This a code for interpolating the rainfall data associated in this publication
DOI: 10.5061/dryad.44g1b/2
title: TableS2

description: Spreadsheet scoring (present = 1, absent = 0) the vegetation (columns 5-9) and geological (columns 10-14) associations of study species. The final two columns indicate the total number of vegetation types and geologies occupied by each species.
DOI: 10.5061/dryad.44g1b/3
title: beast_revised

description: BEAST xml file used to generate the phylogenetic tree for comparative analyses.
DOI: 10.5061/dryad.44g1b/4
title: beast_revised_mcc_newick

description: BEAST maximum clade credibility tree used for comparative analyses.
DOI: 10.5061/dryad.44g1b/5
title: R files

description: Zip archive containing the R code and associated input files used for the main analyses.
DOI: 10.5061/dryad.45jq5/1
title: Data in SPSS format

description: Measured language variables across the cultural groups, in SPSS data file format.
DOI: 10.5061/dryad.45jq5/2
title: Data in CSV format

description: Equivalent data to the SPSS upload, in CSV format.
DOI: 10.5061/dryad.45jq5/3
title: Analysis syntax for SPSS

description: Syntax used to generate the reported results using SPSS.
DOI: 10.5061/dryad.46pg9/2
title: Leaf litter decomposition

description: Leaf litter mass loss values.
DOI: 10.5061/dryad.4p8k8/1
title: Raw data for the study: Core executive functions are associated with success in young elite soccer players

description: csv file of raw data for the study: Core executive functions are associated with success in young elite soccer players
DOI: 10.5061/dryad.4q80h/1
title: Pardepr_compilado
DOI: 10.5061/dryad.569qk/4
title: FASTQ file four of four

description: RAD data for Nelson's and Saltmarsh Sparrows
DOI: 10.5061/dryad.569qk/5
title: Stacks output with identified variants in VCF format

description: Variants identified by Stacks
DOI: 10.5061/dryad.569qk/6
title: Morphometric Data

description: Weight, wing chord, and bill measurements for five subspecies comparisons
DOI: 10.5061/dryad.5rp65/1
title: BoquetData_River_Radio_Map

description: This radio map of the Willsboro rapids was used as learning data in a random forest location fingerprinting exercise to identify the progress of migrating Atlantic salmon in the Boquet River.
DOI: 10.5061/dryad.5rp65/2
title: BoquetData_River_Telemetry_Data

description: This radio telemetry data was collected from 24 tagged Atlantic salmon as they migrated up the Boquet River through the Willsboro rapids. Sites correspond to separate antenna & receivers throughout the study reach, while the Code corresponds to separate fish.
DOI: 10.5061/dryad.6t8vq/21
title: OFFICE - Head Position: Azimuth 60°, Elevation 45°
DOI: 10.5061/dryad.752kk/1
title: Table S1. Dated fossil occurrence of the four megafauna species used

description: Dated fossil occurrence of the four megafauna species used
DOI: 10.5061/dryad.752kk/2
title: Table S2. Data sheet of human sites and all survey sites

description: Data sheet of human sites and all survey sites
DOI: 10.5061/dryad.7k300/2
title: Code R

description: This file contains the R code used to determine thresholds
DOI: 10.5061/dryad.8225n/1
title: WT gland numbering
DOI: 10.5061/dryad.8225n/2
title: S9 gland numbering
DOI: 10.5061/dryad.8225n/3
title: S10 gland numbering
DOI: 10.5061/dryad.8225n/4
title: S11 gland numbering
DOI: 10.5061/dryad.8225n/5
title: CFTR-R gland data
DOI: 10.5061/dryad.8225n/6
title: WT gland data
DOI: 10.5061/dryad.82j26/1
title: Satellite tracking data of juvenile and adult eagles

description: Lesser Spotted Eagles were tracked by means of GPS-enhanced satellite telemetry (Microwave Telemetry, Inc., Columbia, MD, USA) during their autumn migration until the end of the year in 2009. Migration data were obtained for 11 juvenile Lesser Spotted Eagles after they were translocated from Latvia to Germany as well as for 8 juveniles and 9 adults native to the German population. The file contains the columns 'Bird' containing the number of the tracking device, 'Origin' showing whether the bird originated from Latvia ('L') or Germany ('GE'), 'Age' indicating whether the bird was tagged as an adult or as a juvenile, and the columns 'Latitude', 'Longitude', 'Datetime'.
DOI: 10.5061/dryad.b5b77/1
title: e244-mass-diversity-data-output.csv

description: Metadata file
DOI: 10.5061/dryad.bq340/1
title: KSandNEdata
DOI: 10.5061/dryad.cf273/1
title: Impacts of WNS Figure S1 Oct. 2016

description: Standard error estimate for a 2013 cokriging spatial model predicting white-nose syndrome (WNS) exposure probability across a continuous landscape in eastern North America. The standard error estimate for our long-term monitoring site in central Indiana was 0.06, suggesting that predicted values for WNS presence (see Figure 1) were accurate.
Found at DOI: xxx (file size and type).
DOI: 10.5061/dryad.cj0k2/1
title: Empirical mink data

description: Empirical field data of culled American mink in NE Scotland (ID, sex, age, year of capture) and their genotyped 15 microsatellites
DOI: 10.5061/dryad.cj0k2/2
title: Rcode Life-history Parameters

description: R codes for the mink life-history parameters used for the simulations
DOI: 10.5061/dryad.cj0k2/3
title: Genotypes Scenario 1, Central Population

description: Simulation data composed of the genotypes for the initial central population (P0) in Scenario 1
DOI: 10.5061/dryad.cj0k2/4
title: Genotypes Scenario 1, Peripheral Population 1

description: Simulation data composed of the genotypes for the initial peripheral population 1 (IP0 1) in Scenario 1
DOI: 10.5061/dryad.cj0k2/5
title: Genotypes Scenario 1, Peripheral Population 2

description: Simulation data composed of the genotypes for the initial peripheral population 2 (IP0 2) in Scenario 1
DOI: 10.5061/dryad.d7r4g.1
title: Data from: The evolutionary relationships and age of Homo naledi: an assessment using dated Bayesian phylogenetic methods
DOI: 10.5061/dryad.d7r4g.1/1.1
title: List of fossil hypodigms
DOI: 10.5061/dryad.d7r4g.2
title: Data from: The evolutionary relationships and age of Homo naledi: an assessment using dated Bayesian phylogenetic methods
DOI: 10.5061/dryad.d7r4g.2/1.2
title: List of fossil hypodigms
DOI: 10.5061/dryad.d7r4g.2/2.2
title: Character matrix
DOI: 10.5061/dryad.d7r4g.2/3.2
title: Nexus file

description: An example of a nexus file used in one of the analyses.
DOI: 10.5061/dryad.f8c58/1
title: Flow cytometry results

description: Cells counts of fluorescently-labelled and non-labelled D. discoideum spores, that underwent varying levels of structured growth and structured dispersal
DOI: 10.5061/dryad.f8c58/2
title: Growth Rates

description: Comparison of growth rates between EC28.2 and NC28.2.
DOI: 10.5061/dryad.g179n/1
title: data package

description: Please read traits illustration in the data package.
DOI: 10.5061/dryad.j078t/1
title: Dryad Oikos 2017

description: The excel file contains three sheets, one for each section of the document, a) Shell preference,  b) Hiding and escaping in the presence of different predator cues, and c) Escape velocity in natural tide pools.
DOI: 10.5061/dryad.j2n8q/1
title: Scripts

description: Folder containing the scripts for the analyses presented in the article.
DOI: 10.5061/dryad.j2n8q/2
title: Data_and_Metadata

description: Folder containing data for the analyses presented in the article.
DOI: 10.5061/dryad.pm86h/1
title: StressResponseData_Mugabo-etal2017_oik.03701

description: This excel file contains one data sheet for each of the 4 experiments presented in the publication and 2 extra data sheets including the data used to estimate the intra-plate and inter-plate repeatabilities of plasma corticosterone measurements.
DOI: 10.5061/dryad.rm090/1
title: CH_LT_SSR_HfMV1group_300916_dryad

description: SSR data for the small-scale dataset. 200 fungal isolates were genotyped at 11 microsatellite loci.
DOI: 10.5061/dryad.rm090/3
title: HfMV1 groups and virulence
DOI: 10.5061/dryad.rm090/4
title: Table S3

description: overall pairwise identities (nuclear sequences)
DOI: 10.5061/dryad.rm090/5
title: Supplementary tables S4a,b,c

description: overall pairwise identities (amino acid sequences)
DOI: 10.5061/dryad.v9p0b/1
title: CapillaryRarefactionFinal

description: original source of the information: collected in the field
software used to create the data file: spss statistics 21
description of any abbreviations: 
see labeling of variables, HDL - high density lipids, LDL - low density lipids
DOI: 10.5061/dryad.22rh6/1
title: Godwin et al 2017 Sperm competition and sperm length raw data

description: Contains raw data collected during all assays described by the paper.
DOI: 10.5061/dryad.30mv0/1
title: FC Dataset: steady-state GAL pathway induction

description: Raw FCS files and MATLAB analysis code. Flow cytometry analysis toolkit used in this code is available at https://github.com/springerlab
DOI: 10.5061/dryad.30mv0/2
title: FC Dataset: steady-state heat shock stress response

description: Raw FCS files and MATLAB analysis code. Flow cytometry analysis toolkit used in this code is available at https://github.com/springerlab
DOI: 10.5061/dryad.4464n/1
title: Characters

description: Character matrix of morphological traits and climate values averaged to species level.
DOI: 10.5061/dryad.4464n/2
title: Choropleth

description: Shape files of spatial grid with beak size values attached as attributes of each grid cell. Used to produce choropleth in QGIS.
DOI: 10.5061/dryad.4464n/3
title: Trees

description: Phylogenetic trees used in this study, stored in Newick format.
DOI: 10.5061/dryad.61kr4/1
title: Bolnick traits

description: Data on stickleback origin, destination, treatment, phenotype, sex, growth, and survival
DOI: 10.5061/dryad.61kr4/2
title: Bolnick_parasites

description: Parasite load data on control and recaptured caged stickleback.
DOI: 10.5061/dryad.61kr4/3
title: Bolnick_mhc

description: MHC class IIb exon 2 genotype data from released and recaptured stickleback.
DOI: 10.5061/dryad.61kr4/4
title: dna2prot

description: Converts MHC DNA sequence haplotype identifiers into amino acid sequence identifiers
DOI: 10.5061/dryad.61kr4/5
title: MHC_master

description: FASTA file of MHC sequence reads
DOI: 10.5061/dryad.61kr4/6
title: TAs_aln

description: Aligned sequences of inferred alleles of MHC IIb exon 2.
DOI: 10.5061/dryad.69gt3/1
title: PRE021

description: This file contains flowering stem height for all transect/watershed/year combinations at Konza Prairie used in this study.
DOI: 10.5061/dryad.69gt3/2
title: PRE022

description: This file contains the weight of flowering stalk biomass for all transect/watershed/year combinations at Konza Prairie used in this study.
DOI: 10.5061/dryad.85c0s/1
title: Supp_Fig_1

description: supplementary figure 1
DOI: 10.5061/dryad.85c0s/2
title: Supp_Fig_2

description: supplementary figure 2
DOI: 10.5061/dryad.85c0s/3
title: Supp_Fig_3

description: supplementary figure 3
DOI: 10.5061/dryad.85c0s/4
title: Supp_Fig_4

description: supplementary figure 4
DOI: 10.5061/dryad.85c0s/5
title: Supp_Fig_5

description: supplementary figure 5
DOI: 10.5061/dryad.85c0s/6
title: Supp_Fig_6

description: supplementary figure 6
DOI: 10.5061/dryad.85c0s/7
title: Supp_Fig_7

description: supplementary figure 7
DOI: 10.5061/dryad.85c0s/8
title: Supp_Table_1

description: supplementary table 1
DOI: 10.5061/dryad.98470/1
title: minchin_rawls_2017_dryad_upload

description: tif files for the EKW and WIK cohorts. Image # corresponds to Dryad # in Table S4.
DOI: 10.5061/dryad.cf273/2
title: Impacts of WNS Table S1 Nov. 2016

description: Predicted probability of white-nose syndrome (WNS) exposure for a long-term bat monitoring site in central Indiana and number of WNS-infected caves in Indiana by year (2008–2013). Annual values for the central Indiana site were extracted from cokriging spatial models developed using population data from Indiana bat Myotis sodalis hibernacula.
DOI: 10.5061/dryad.cf273/3
title: Impacts of WNS Table S2 Nov. 2016

description: Records of Indiana bats observed in Indiana caves during hibernation surveys in 2011 and 2013. Bats were originally banded at a long-term monitoring site in central Indiana between 2002 and 2012. The white-nose infection year, distance, and direction is listed for each cave. Caves are grouped by proximity to our study area and represent two major hibernacula concentrations in Indiana.
DOI: 10.5061/dryad.cf273/4
title: Impacts of WNS Table S4 Jan. 2017

description: Parameter estimates, standard errors, z-values, and P-values for model parameters in the count portion of the final zero-inflated model predicting bat captures at a long-term monitoring site in central Indiana (2002–2014).
DOI: 10.5061/dryad.cf273/5
title: Impacts of WNS Table S5 Jan. 2017

description: Parameter estimates, standard errors, z-values, and P-values for model parameters in the logistic portion of the final zero-inflated model predicting bat captures at a long-term monitoring site in central Indiana (2002–2014).
DOI: 10.5061/dryad.cf273/6
title: Impacts of WNS Table S3 Nov. 2016

description: List of factors and distributions for zero-inflated mixed models used to predict bat captures at a long-term monitoring site in central Indiana (2002–2014). The most supported model, as shown by likelihood ratio tests, is the full model with a negative binomial distribution, Model 4.
DOI: 10.5061/dryad.cf273/7
title: Impacts of WNS Table S6 Jan. 2017

description: Data containing information on bat captures from 2002 to 2014 organized by site visit for a long-term monitoring study in central Indiana.
DOI: 10.5061/dryad.cj0k2/10
title: Genotypes Scenario 3, Population Spey

description: Simulation data composed of the genotypes for the initial Spey population (P0 Spey) in Scenario 3
DOI: 10.5061/dryad.cj0k2/11
title: Genotypes Scenario 3, Population Tay

description: Simulation data composed of the genotypes for the initial Tay population (P0 Tay) in Scenario 3
DOI: 10.5061/dryad.cj0k2/6
title: Genotypes Scenario 2, Population Spey

description: Simulation data composed of the genotypes for the initial Spey population (P0 Spey) in Scenario 2
DOI: 10.5061/dryad.cj0k2/7
title: Genotypes Scenario 2, Population Dee

description: Simulation data composed of the genotypes for the initial Dee population (P0 Dee) in Scenario 2
DOI: 10.5061/dryad.cj0k2/8
title: Genotypes Scenario 2, Population Tay

description: Simulation data composed of the genotypes for the initial Tay population (P0 Tay) in Scenario 2
DOI: 10.5061/dryad.cj0k2/9
title: Genotypes Scenario 3, Population Dee

description: Simulation data composed of the genotypes for the initial Dee population (P0 Dee) in Scenario 3
DOI: 10.5061/dryad.d7r4g.1/2.1
title: Character matrix
DOI: 10.5061/dryad.f8c58/3
title: Expansion rate

description: Comparison of the expansion rates across a nutrient agar plate of NC28.1 and EC28.2.
DOI: 10.5061/dryad.gf83v/1
title: drosophila_data
DOI: 10.5061/dryad.gf83v/11
title: toad_tree
DOI: 10.5061/dryad.gf83v/2
title: drosophila_ultrametric_tree
DOI: 10.5061/dryad.gf83v/3
title: MCMCglmm genetic distance example
DOI: 10.5061/dryad.gf83v/4
title: nolana
DOI: 10.5061/dryad.gf83v/5
title: nolana_ultrametric_tree
DOI: 10.5061/dryad.gf83v/6
title: nolanagd
DOI: 10.5061/dryad.gf83v/7
title: silene