cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6529677
title: Reverse Total Shoulder Arthroplasty Alters Humerothoracic, Scapulothoracic, and Glenohumeral Motion During Weighted Scaption

description: This dataset contains scapula and humerus kinematics from 10 healthy subjects, and 10 subjects post-operative to reverse total shoulder arthroplasty, performing scapular plane abduction (scaption) with and without a 2.2 kg (5 lb) handheld weight. The humerus and scapula were imaged at 100 Hz using a biplane fluoroscopy system. 3D models of the humerus and scapula were constructed from each subject’s CT scan. Model-based markerless tracking ascertained the 3D position and orientation of each bone model by semi-automatically aligning digitally reconstructed radiographs against each frame of the biplane fluoroscopy recordings. The kinematics of the bones are presented relative to each subject's torso. These data are available for download to aid researchers and clinicians in characterizing non-pathologic and reverse total shoulder arthroplasty motion during scapular plane abduction with and without a 5 lb handheld weight.
description: Research reported in this publication was supported by the National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) of the National Institutes of Health under award number R01 AR067196. The research content herein is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
DOI: 10.5281/zenodo.6529676
title: Reverse Total Shoulder Arthroplasty Alters Humerothoracic, Scapulothoracic, and Glenohumeral Motion During Weighted Scaption

description: This dataset contains scapula and humerus kinematics from 10 healthy subjects, and 10 subjects post-operative to reverse total shoulder arthroplasty, performing scapular plane abduction (scaption) with and without a 2.2 kg (5 lb) handheld weight. The humerus and scapula were imaged at 100 Hz using a biplane fluoroscopy system. 3D models of the humerus and scapula were constructed from each subject’s CT scan. Model-based markerless tracking ascertained the 3D position and orientation of each bone model by semi-automatically aligning digitally reconstructed radiographs against each frame of the biplane fluoroscopy recordings. The kinematics of the bones are presented relative to each subject's torso. These data are available for download to aid researchers and clinicians in characterizing non-pathologic and reverse total shoulder arthroplasty motion during scapular plane abduction with and without a 5 lb handheld weight.
description: Research reported in this publication was supported by the National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) of the National Institutes of Health under award number R01 AR067196. The research content herein is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
DOI: 10.5281/zenodo.4289455
title: Age-related humerothoracic, scapulothoracic, and glenohumeral kinematics during elevation and rotation motions

description: Age affects gross shoulder range of motion (ROM), but biomechanical changes over a lifetime are typically only characterized for the humerothoracic joint. Suitable age-related baselines for the scapulothoracic and glenohumeral contributions to humerothoracic motion are needed to advance understanding of shoulder injuries and pathology. Notably, biomechanical comparisons between younger or older populations may obscure detected differences in underlying shoulder motion. Kinematics derived from healthy subjects aged &lt;35 years and &gt;45 years using biplane fluoroscopy and skin-marker motion analysis quantified humerothoracic, scapulothoracic, and glenohumeral motion during 3 static poses (resting neutral, internal rotation to L4-L5, and internal rotation to maximum reach) and 2 dynamic activities (scapular plane abduction and external rotation in adduction). These data are available for download to aid researchers and clinicians in characterizing non-pathologic shoulder motion during common clinical ROM activities.
DOI: 10.17632/g58z4mczs7.1
title: SADCP measurements in the Bransfield Strait in 2017

description: The kinematic structure of currents in the Bransfield Strait was measured over 50 transects across the strait using a Shipborne Acoustic Current Doppler Profiler (SADCP) onboard the R/V "Akademik Sergey Vavilov" (ASV) and "Akademik Ioffe" (AI) in 2017. The sections crossed all three basins of the Bransfield Strait and the main flows in the strait including the Bransfield Current and the southward flow of Weddell Sea waters along the Antarctic Peninsula. Teledyne RD Instruments Ocean Surveyor (TRDI OS) SADCPs with frequencies of 76.8 kHz (R/V ASV) and 38.4 kHz (R/V AI) were used for the data collection. During all our surveys the profilers were set in the narrowband mode, which increases the profiling range up to 700 m depth for 76.8 kHz SADCP and up to 1000 m depth for 38.4 kHz SADCP. We set 60 vertical bins of 16 m each with 8 m blank distance immediately below the transducer for the R/V ASV. The equivalent parameters for the R/V AI were 60 bins of 24 m each and 10 m blank distance. The draught of both ships is 6 m, which gives 22 m (R/V ASV) or 28 m (R/V AI) depths for the center of the first bin (the depth of the uppermost layer with velocity measurements). Time averaging of the raw data was performed over 120 s intervals. The data were collected using VmDas software.
DOI: 10.17632/gdtg9ry86h.1
title: SADCP measurements of the Malvinas Current at 43-47°S in March 2020

description: Field measurements of the Malvinas Current velocity distribution were performed at a few locations of the western slope of the Argentine Basin in the South Atlantic Ocean between 47° and 43°S including several sections across the current. The underway Shipborne Acoustic Doppler Current Profiler (SADCP) data were collected from the R/V “Akademik Mstislav Keldysh” in March 2020 using a Teledyne RD Instruments Ocean Surveyor profiler with a frequency of 76.8 kHz. During these measurements, the profiler was set in narrowband mode, which increases the profiling range up to 700 m depth. We set the system to collect velocity observations at 100 vertical bins 8-m each with an 8-m blank distance immediately below the transducer. The depth of the uppermost layer with valid velocity measurements is centered at 18 m due to the blank distance and 6-m draught of the ship. Time averaging of the raw data was made over 120 s intervals, which corresponds to along-track averaging of roughly 500 m along the ship's track.
DOI: 10.17632/fvzm88tm3v.3
title: NSD1 mediates antagonism between SWI/SNF and Polycomb complexes and is required for transcriptional activation upon EZH2 inhibition

description: Uncropped immunoblots for manuscript: NSD1 mediates antagonism between SWI/SNF and Polycomb complexes and is required for transcriptional activation upon EZH2 inhibition.
DOI: 10.17632/kkgxjcx82s.1
title: Data_A New Species of Hyporheic Corethrella Coquillett from North America (Diptera: Corethrellidae)

description: Larval and adult data sets from a study conducted on Bull Creek, MO (southwest of Ozark, MO) from October 2017 to October 2018 by Nathan C. Dorff. Accompanies A New Species of Hyporheic Corethrella Coquillett from North America (Diptera: Corethrellidae).

The larva of Corethrella kipferi sp. n. occupies hyporheic habitat regardless of perennial surface flow in two close locales in the Ozark Mountains in Christian County, Missouri, USA. This represents the first capture and identification to species-level of Corethrella in the hyporheic zone and the only description of a larva from the rotunda species group. The larvae appear to be obligate hyporheic dwellers with no representatives collected in concurrent benthic samples from riffles of the perennial stream. The female adult and fourth instar larva are described and illustrated using photomicrographs and line drawings. We describe what is known of the natural history of the new species and infer its phylogenetic placement within the genus.
DOI: 10.5281/zenodo.6513817
title: Data sets for Span-level SNR Regression in EONs

description: <strong>DS1: </strong>the symbol rate is fixed and equals 64 Gbaud, and the channel loading factor is selected from [25 − 100]; <strong>DS2:</strong> the symbol rate and channel occupancy status is randomly selected (uniformly distributed) from {32, 64, 96 (GBaud) and {0, 1}, respectively; <strong>DS3</strong>: both symbol rate and the channel loading factor are fixed and equal to 64 GBaud and 25%, respectively.
description: Farhad Arpanaei acknowledges support from the CONEX-Plus programme funded by Universidad Carlos III de Madrid and the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No. 801538.
DOI: 10.5281/zenodo.6513816
title: Data sets for Span-level SNR Regression in EONs

description: <strong>DS1: </strong>the symbol rate is fixed and equals 64 Gbaud, and the channel loading factor is selected from [25 − 100]; <strong>DS2:</strong> the symbol rate and channel occupancy status is randomly selected (uniformly distributed) from {32, 64, 96 (GBaud) and {0, 1}, respectively; <strong>DS3</strong>: both symbol rate and the channel loading factor are fixed and equal to 64 GBaud and 25%, respectively.
description: Farhad Arpanaei acknowledges support from the CONEX-Plus programme funded by Universidad Carlos III de Madrid and the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No. 801538.
DOI: 10.3886/e170001
title: Statehood and civil society from the framing function to the protest pleading

description: <b>الدولة والمجتمع المدني من الوظيفة التأطيرية إلى الترافع الاحتجاجي</b><b></b> <br> <b>ملخص البحث<br></b> تتمحور الدراسة وفق محددات أساسية، تقارب <b>أولا</b>، مراحل تطور العلاقة بين الدولة والمجتمع المدني بالمغرب التي خضعت لمحطات، وفق تطور النسق السوسيو السياسي وفي سياق تحكمه تفاعلية متبادلة بين الصراع والمنافسة والدعم والاحتواء، وتحول المجتمع المدني بعد دستور 2011 نحو الترافع للمطالبة بالحقوق والحريات الأساسية المادية والمعنوية في سياق تنامي الحركات الاحتجاجية، أبرزنا في <b>نقطة ثانية</b>، تعدد وظائف المجتمع المدني، مقابل أزمة ثقة المحتجين في أدوار المجتمع المدني ما انعكس سلبا على تدبيره الاستباقي للتوترات المجتمعية، وفي <b>نقطة</b> <b>ثالثة</b> استحضرنا فرضية العلاقة التبادلية والتداخل الوظيفي بين الدولة الحديثة والمجتمع المدني. <br> <b>الكلمات المفاتيحة: </b>الدولة، المجتمع المدني، الوظيفة التأطيرية، الفعل الاحتجاجي. <br> <b><br></b><b>Statehood and civil society from the framing function to the protest pleading</b> <br> <b>Abstract</b><b>:<br></b> Based on fixed criteria this study aims to approach the following points. Firstly, the principal steps of the relation between statehood and civil society. By using the improving of social and economic system under a context controlled by interactions, conflicts, competition, aid, and containing. The civil society in Morocco after 2011 has transformed to demand rights and basic freedoms after the big social movements. Secondly, civil society brought many new and multi-functions in front of the crisis of trust between the actors of civil movements in their roles. Which have many negative impacts on the precedent managing of social problems. Thirdly, by taking in our account the interactive relation between modern statehood and civil society. <b>Keywords</b>: statehood, civil society, demonstrations action, social frame.
DOI: 10.5281/zenodo.6529742
title: Data Sets for SNR Estimation in Flexible Optical Networks: Lightpath, Link, and Span Levels

description: These data sets have been generated based on the analytic models to estimate signal to the noise ratio (SNR) for spans, links, and lightpaths of a Flexible Optical Network (FON) over standard single-mode fiber (SSFM).
description: Farhad Arpanaei acknowledges support from the CONEX-Plus programme funded by Universidad Carlos III de Madrid and the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No. 801538.
DOI: 10.26180/16553151
title: Macquarie perch Macquaria australasica DArT genotypes for Lutz et al Cataract River hybridization study

description: Data used in the manuscript: <br>Lutz, M. L., P. Sunnucks, D. G. Chapple, D. Gilligan, M. Lintermans, and A. Pavlova. in prep. Strong bidirectional gene flow between fish lineages separated for over a 100,000 years.<br><br>File “Report_DMacq19-4705_8_moreOrders_SNP_mapping_2_with_Cataract_River.csv” is the genotyping file from Diversity Arrays Technology. It contains genotypes for 2724 Macquarie perch individuals (including those not used for this study) from two basins: Murray Darling basin (MDB) and Hawkesbury-Nepean Basin (HNB).<br><br>File “Metadata.txt” explains content of columns and rows in the genotyping file.<br><br>File Lutz_et_al_Cataract_River_hybridization_covariate_file.csv contains dartR covariate file for paper (2). Columns: id- individual identification, pop- population (CDM- Cataract Dam, CR- Cataract River, dontuse- not used in this study), pop_mitolineage- population and mitochondrial lineage, as per Pavlova et al 2017 Evolutionary Applications 10:531–550 (MDB- inland Murray Darling Basin mitolineage, HNB- coastal Hawkesbury-Nepean Basin mitolineage)<br><br><br>
DOI: 10.5281/zenodo.6529780
title: What Caused the 2020 Record-Breaking Summer Marine Heatwaves in the Western North Pacific?

description: The numerical results of tropical oceans with SST anomalies in the summer of 2020. There are five files include one control file and four tropical ocean files.
description: {"references": ["Wang, C., Wu, K., Wu, L., Zhao, H., & Cao, J. (2021). What Caused the Unprecedented Absence of Western North Pacific Tropical Cyclones in July 2020? Geophysical Research Letters, 48(9)."]}
DOI: 10.5281/zenodo.5079757
title: What Caused the 2020 Record-Breaking Summer Marine Heatwaves in the Western North Pacific?

description: The numerical results of tropical oceans with SST anomalies in the summer of 2020. There are five files include one control file and four tropical ocean files.
description: {"references": ["Wang, C., Wu, K., Wu, L., Zhao, H., & Cao, J. (2021). What Caused the Unprecedented Absence of Western North Pacific Tropical Cyclones in July 2020? Geophysical Research Letters, 48(9)."]}
DOI: 10.6084/m9.figshare.19729480.v1
title: Predicting short-term PM2.5 concentrations at fine temporal resolutions using a multi-branch temporal graph convolutional neural network

description: The compressed package (study code.zip) contains the code files implemented by an under review paper ("Predicting short-term PM2.5 concentrations at fine temporal resolutions using a multi-branch temporal graph convolutional neural network"). <br> Among the study code.zip, main.py is the model code based on a multi-branch temporal graph convolutional neural network. tgcn.py is the temporal graph convolutional network. utils.py contains some functions of graph convolution process. input_data.py is data processing. <br> The zip file (input_data.zip) provides an example of air quality data including PM2.5 concentrations and some meteorological data. input_data.zip also contains a N by N adjacency matrix, which describes the spatial relationship between air quality monitoring stations.
DOI: 10.6084/m9.figshare.19730008
title: A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history

description: <strong>Supplementary Materials and Datasets</strong> <br> Descriptions for files in this folder (alphabetical order): <br> <strong>Alignment</strong>: Aligned sequences in FASTA format <br> <strong>BEAST time calibrated_tree file:</strong> Maximum clade credibility tree for the time-calibrated BEAST analysis <br> <strong>IQTREE_tree file:</strong> Consensus tree for the IQ-TREE maximum likelihood analysis <br> <strong>Partitions</strong>: Gene partitions for the sequence alignment <br> <strong>Rplot_ARD:</strong> Ancestral state reconstruction for the ARD model <br> <strong>Rplot_ER:</strong> Ancestral state reconstruction for the ER model <br> <strong>Table</strong> <strong>S1:</strong> Sequences used in this study including their associated museum voucher numbers and GenBank accession numbers. Accession numbers beginning with “MZ” were newly generated for this study. Museum abbreviations are as follows: ZRC=Zoological Reference Collection of the Lee Kong Chian Natural History Museum, National University of Singapore; UF=Florida Museum of Natural History, University of Florida, Gainesville, USA; ULLZ=the University of Louisiana at Lafayette Zoological Collections, USA; MNHN=Muséum National d'histoire Naturelle, Paris; NMCR=National Museum of Natural History, Crustacean Collection, Manila, Philippines. <br> <strong>Traits</strong>: Character states for the ancestral state reconstruction analysis. 0 = deep water; 1 = shallow water.<br> <br> <br> <br>
DOI: 10.6084/m9.figshare.19730008.v1
title: A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history

description: <strong>Supplementary Materials and Datasets</strong> <br> Descriptions for files in this folder (alphabetical order): <br> <strong>Alignment</strong>: Aligned sequences in FASTA format <br> <strong>BEAST time calibrated_tree file:</strong> Maximum clade credibility tree for the time-calibrated BEAST analysis <br> <strong>IQTREE_tree file:</strong> Consensus tree for the IQ-TREE maximum likelihood analysis <br> <strong>Partitions</strong>: Gene partitions for the sequence alignment <br> <strong>Rplot_ARD:</strong> Ancestral state reconstruction for the ARD model <br> <strong>Rplot_ER:</strong> Ancestral state reconstruction for the ER model <br> <strong>Table</strong> <strong>S1:</strong> Sequences used in this study including their associated museum voucher numbers and GenBank accession numbers. Accession numbers beginning with “MZ” were newly generated for this study. Museum abbreviations are as follows: ZRC=Zoological Reference Collection of the Lee Kong Chian Natural History Museum, National University of Singapore; UF=Florida Museum of Natural History, University of Florida, Gainesville, USA; ULLZ=the University of Louisiana at Lafayette Zoological Collections, USA; MNHN=Muséum National d'histoire Naturelle, Paris; NMCR=National Museum of Natural History, Crustacean Collection, Manila, Philippines. <br> <strong>Traits</strong>: Character states for the ancestral state reconstruction analysis. 0 = deep water; 1 = shallow water.<br> <br> <br> <br>
DOI: 10.5517/ccdc.csd.cc28pkn6
title: CCDC 2106098: Experimental Crystal Structure Determination

description: Related Article: Zhang Xiaodie|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28pkp7
title: CCDC 2106099: Experimental Crystal Structure Determination

description: Related Article: Zhang Xiaodie|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28pkq8
title: CCDC 2106100: Experimental Crystal Structure Determination

description: Related Article: Zhang Xiaodie|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28pkr9
title: CCDC 2106101: Experimental Crystal Structure Determination

description: Related Article: Zhang Xiaodie|2021|CSD Communication|||
DOI: 10.6084/m9.figshare.15110554
title: Phylogenomic analyses reveal a history of hybridisation and introgression between <i>Sophora</i> sect. <i>Edwardsia</i> (Fabaceae) species in New Zealand

description: Past studies of <i>Sophora</i> sect. <i>Edwardsia</i> using traditional phylogenetic and population genetic markers have been unable to produce a resolved species phylogeny of this recent radiation of shrubs and trees. Here we examined the relationships within and between the New Zealand species of <i>Sophora</i> sect. <i>Edwardsia</i> using next-generation sequencing. We generated genome-wide SNP data with double-digest restriction site-associated DNA sequencing (ddRADseq). <i>Sophora prostrata</i> was resolved as sister to the remaining species in all analyses. Relationships between the remaining taxa exhibited a high level of conflict with many of the genetic clusters reflecting geography rather than species boundaries. This result contrasts with a previous study, which was able to differentiate most species using genotype data from nine microsatellite loci. Overall our ddRADseq results indicate a high level of interspecific hybridisation and introgression within the group, which blurs the taxonomic boundaries throughout the distributional ranges of most species. Hybridisation and introgression among regional metapopulations comprising closely related species may increase the adaptive potential to respond to changing local conditions, and at the same time selection acts to maintain their genetic identity in the face of ongoing gene flow.
DOI: 10.6084/m9.figshare.15110554.v1
title: Phylogenomic analyses reveal a history of hybridisation and introgression between <i>Sophora</i> sect. <i>Edwardsia</i> (Fabaceae) species in New Zealand

description: Past studies of <i>Sophora</i> sect. <i>Edwardsia</i> using traditional phylogenetic and population genetic markers have been unable to produce a resolved species phylogeny of this recent radiation of shrubs and trees. Here we examined the relationships within and between the New Zealand species of <i>Sophora</i> sect. <i>Edwardsia</i> using next-generation sequencing. We generated genome-wide SNP data with double-digest restriction site-associated DNA sequencing (ddRADseq). <i>Sophora prostrata</i> was resolved as sister to the remaining species in all analyses. Relationships between the remaining taxa exhibited a high level of conflict with many of the genetic clusters reflecting geography rather than species boundaries. This result contrasts with a previous study, which was able to differentiate most species using genotype data from nine microsatellite loci. Overall our ddRADseq results indicate a high level of interspecific hybridisation and introgression within the group, which blurs the taxonomic boundaries throughout the distributional ranges of most species. Hybridisation and introgression among regional metapopulations comprising closely related species may increase the adaptive potential to respond to changing local conditions, and at the same time selection acts to maintain their genetic identity in the face of ongoing gene flow.