cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x44u3p
title: Occurrence Download

description: A dataset containing 355 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is one of (Maihuenia Phil., Maihuenia (Phil. ex F.A.C.Weber) Schum.)"
 ]
}

 The dataset includes 355 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020144-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgmnd5
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyclopes ida Thomas, 1900"
 ]
}

 The dataset includes 58 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020145-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngydcy
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pusa sibirica (Gmelin, 1788)"
 ]
}

 The dataset includes 302 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020146-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6utw9x
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Maihueniopsis Speg."
 ]
}

 The dataset includes 724 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020147-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ttf27
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (ARG, CHL, PRY, URY, FLK, BRA.21_1, BRA.16_1, BRA.24_1)",
 "TaxonKey is Epiphyllum Haw."
 ]
}

 The dataset includes 189 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020148-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ptm2hp
title: Occurrence Download

description: A dataset containing 1915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-124.96836 43.03802,-107.63806 43.03802,-107.63806 49.56538,-124.96836 49.56538,-124.96836 43.03802))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Gulo gulo (Linnaeus, 1758), Lynx canadensis Kerr, 1792, Coccyzus americanus (Linnaeus, 1758), Danaus plexippus (Linnaeus, 1758))"
 ]
}

 The dataset includes 1915 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020149-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15195546
title: Dataset for Light Interference with Small Particles Experiment

description: This dataset supplements the article:Voronkin, O., & Lushchin, S. (2025). Demonstration Experiment and Theoretical Model of Light Interference with Small Particles. Physics Education, 60(4), 045002. https://doi.org/10.1088/1361-6552/adcf6d

It provides experimental data and images from a light interference study using powdered sugar particles on a 2.0 mm glass plate. The dataset includes a photograph of the interference pattern, microscope images, ImageJ-processed images, particle size measurements, and a LabPlot project file for particle size distribution.

 

Contents of the dataset:



'rings_2mm.jpg': Original photograph of the interference pattern formed by laser radiation (λ = 0.6328 μm) interacting with powdered sugar particles on a 2.0 mm thick glass plate. Captured on 2023-03-30 at 09:41:11 using a Canon EOS 6D Mark II with a 70 mm focal length, 0.5 s exposure, f/4 aperture, and ISO 100.

'particles_microscope_1280x.jpg': Original microscope image of powdered sugar particles captured at ×1280 magnification using MMU-5C metallographic microscopy and a UCMOS05100KPA digital camera. The image was acquired on 2024-12-30 at 11:41:20 with an exposure time of 0.35 seconds. No digital processing was applied.

'particles_preprocessed_1280x.jpg': Pre-processed version of the same microscope image at ×1280 magnification. Contrast and sharpness were enhanced in a raster graphics editor to improve particle visibility and support more accurate segmentation during subsequent analysis in ImageJ. A scale bar indicating 10 µm was added to the image.

'particles_processed_imagej_1280x.tif':  8-bit image processed in ImageJ at ×1280 magnification for particle segmentation and quantitative analysis. The file contains metadata related to the segmented particles, including their boundaries and assigned IDs, allowing re-analysis within ImageJ.

'particles_highlighted_imagej_1280x.png': ImageJ-processed image at ×1280 magnification showing visually segmented and numbered particles. 

'particle_sizes_imagej.csv': Table of particle size data exported from ImageJ, including parameters such as Area, Perimeter, Circularity, Roundness, Aspect Ratio, Solidity, X and Y coordinates, Minimum, Maximum, and calculated equivalent particle diameters (in µm).

'LabPlot project particle_distribution_plot.lml':  LabPlot project file containing a histogram of the particle size distribution based on the calculated equivalent particle diameters (in µm).
DOI: 10.5281/zenodo.15358287
title: Dataset for Light Interference with Small Particles Experiment

description: This dataset supplements the article:Voronkin, O., & Lushchin, S. (2025). Demonstration Experiment and Theoretical Model of Light Interference with Small Particles. Physics Education, 60(4), 045002. https://doi.org/10.1088/1361-6552/adcf6d

It provides experimental data and images from a light interference study using powdered sugar particles on a 2.0 mm glass plate. The dataset includes a photograph of the interference pattern, microscope images, ImageJ-processed images, particle size measurements, and a LabPlot project file for particle size distribution.

 

Contents of the dataset:



'rings_2mm.jpg': Original photograph of the interference pattern formed by laser radiation (λ = 0.6328 μm) interacting with powdered sugar particles on a 2.0 mm thick glass plate. Captured on 2023-03-30 at 09:41:11 using a Canon EOS 6D Mark II with a 70 mm focal length, 0.5 s exposure, f/4 aperture, and ISO 100.

'particles_microscope_1280x.jpg': Original microscope image of powdered sugar particles captured at ×1280 magnification using MMU-5C metallographic microscopy and a UCMOS05100KPA digital camera. The image was acquired on 2024-12-30 at 11:41:20 with an exposure time of 0.35 seconds. No digital processing was applied.

'particles_preprocessed_1280x.jpg': Pre-processed version of the same microscope image at ×1280 magnification. Contrast and sharpness were enhanced in a raster graphics editor to improve particle visibility and support more accurate segmentation during subsequent analysis in ImageJ. A scale bar indicating 10 µm was added to the image.

'particles_processed_imagej_1280x.tif':  8-bit image processed in ImageJ at ×1280 magnification for particle segmentation and quantitative analysis. The file contains metadata related to the segmented particles, including their boundaries and assigned IDs, allowing re-analysis within ImageJ.

'particles_highlighted_imagej_1280x.png': ImageJ-processed image at ×1280 magnification showing visually segmented and numbered particles. 

'particle_sizes_imagej.csv': Table of particle size data exported from ImageJ, including parameters such as Area, Perimeter, Circularity, Roundness, Aspect Ratio, Solidity, X and Y coordinates, Minimum, Maximum, and calculated equivalent particle diameters (in µm).

'LabPlot project particle_distribution_plot.lml':  LabPlot project file containing a histogram of the particle size distribution based on the calculated equivalent particle diameters (in µm).
DOI: 10.5281/zenodo.15006565
title: APE Scores and Classifications for Missense Variants of Oncoproteins
DOI: 10.5281/zenodo.15006566
title: APE Scores and Classifications for Missense Variants of Oncoproteins
DOI: 10.15468/dl.5ce7fz
title: Occurrence Download

description: A dataset containing 59217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Swiss National Databank of Vascular Plants, Atlas des Orchidées de France métropolitaine (2010), INPN - Données flore des CBN agrégées par la FCBN, iNaturalist Research-grade Observations, Centralisation des observations floristiques - Observations floristiques floutées issues de la base de données flore du Conservatoire botanique national alpin, Observation.org, Nature data from around the World, 16 - Inventaire général de la flore et de la fonge - SFO - inventaire de la flore, Artportalen, Occurrence Data of Vascular Plants collected or compiled for the Flora of Bavaria)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orchis militaris L."
 ]
}

 The dataset includes 59217 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020142-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qh72hh
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Pakistan",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanum lycopersicum L."
 ]
}

 The dataset includes 77 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020150-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/f6cgw4
title: Replication Data for: Testing the Waters: Exploring Why Democracies Have More Maritime Conflict

description: This page includes the replication files for Testing the Waters: Exploring Why Democracies Have More Maritime Conflict coauthored by Chase LaSpisa and Sara McLaughlin Mitchell. The files are from Stata 17 and include a dta file and a do file. These files should run completely once loaded and will replicate the results found in the main manuscript as well as the online appendix. Please contact either of us if you have any issues.
DOI: 10.15468/dl.x3qs8s
title: Occurrence Download

description: A dataset containing 216242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Palestine, State of",
 "DatasetKey is INPA - Observations"
 ]
}

 The dataset includes 216242 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020140-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9exg24
title: Occurrence Download

description: A dataset containing 101245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Engraulis ringens Jenyns, 1842"
 ]
}

 The dataset includes 101245 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020137-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du9jh8
title: Occurrence Download

description: A dataset containing 186227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-71.54811 -32.90522,-71.29235 -32.90522,-71.29235 -32.63756,-71.54811 -32.63756,-71.54811 -32.90522))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 186227 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020134-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmjysk
title: Occurrence Download

description: A dataset containing 36841 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BOTU - Herbário Irina Delanova Gemtchújnicov"
 ]
}

 The dataset includes 36841 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020153-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15298483
title: Single cell multiomics reveals drivers of metabolic dysfunction-associated steatohepatitis

description: This repository contains supplemental data related to the above paper. Specifically, there are chromatin states from ChromHMM trained on ATAC, H3K27ac, and H3K27me3 signals, DESeq for various modaliites, cell types, and contrasts, QTLs by modality and cell type, cell type peaks, and SCENIC+ eRegulons.

Abstract: Metabolic dysfunction-associated steatotic liver disease (MASLD) has limited treatments, and cell type-specific regulatory networks driving MASLD represent therapeutic avenues. We assayed five transcriptomic and epigenomic modalities in 2.4M cells from 86 livers across MASLD stages. Integrating modalities increased annotation of the genome in liver cell types several-fold over previous catalogs. We identified cell type regulatory networks of MASLD progression, including distinct hepatocyte networks driving MASL and mild and severe fibrosis MASH. Our single cell atlas annotated 88% of MASH-associated loci, including a third affecting hepatocyte regulation which we linked to distal target genes. Finally, we characterized hepatocyte heterogeneity, including MASH-enriched populations with altered repression, localization, and signaling. Overall, our results provide high-resolution maps of liver cell types and revealed novel targets for anti- MASH therapy.
DOI: 10.5281/zenodo.15298484
title: Single cell multiomics reveals drivers of metabolic dysfunction-associated steatohepatitis

description: This repository contains supplemental data related to the above paper. Specifically, there are chromatin states from ChromHMM trained on ATAC, H3K27ac, and H3K27me3 signals, DESeq for various modaliites, cell types, and contrasts, QTLs by modality and cell type, cell type peaks, and SCENIC+ eRegulons.

Abstract: Metabolic dysfunction-associated steatotic liver disease (MASLD) has limited treatments, and cell type-specific regulatory networks driving MASLD represent therapeutic avenues. We assayed five transcriptomic and epigenomic modalities in 2.4M cells from 86 livers across MASLD stages. Integrating modalities increased annotation of the genome in liver cell types several-fold over previous catalogs. We identified cell type regulatory networks of MASLD progression, including distinct hepatocyte networks driving MASL and mild and severe fibrosis MASH. Our single cell atlas annotated 88% of MASH-associated loci, including a third affecting hepatocyte regulation which we linked to distal target genes. Finally, we characterized hepatocyte heterogeneity, including MASH-enriched populations with altered repression, localization, and signaling. Overall, our results provide high-resolution maps of liver cell types and revealed novel targets for anti- MASH therapy.
DOI: 10.15468/dl.7yt6qn
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylopezus auricularis (Gyldenstolpe, 1941)"
 ]
}

 The dataset includes 225 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020154-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/3uvasf
title: Replication Data for Economic Sanctions and Sovereign Bond Ratings in the Developing World

description: Data and Do-File for the manuscript "Economic Sanctions and Sovereign Bond Ratings in the Developing World"
DOI: 10.15468/dl.jsm8x4
title: Occurrence Download

description: A dataset containing 112930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-2000.0",
 "GadmGid is one of (USA.32.4_1, USA.32.5_1, USA.32.15_1, USA.32.19_1, USA.32.20_1, USA.32.22_1, USA.32.25_1, USA.32.27_1, USA.32.30_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 112930 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020151-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57761/w5a5-yb97
title: Medicare 20% [2019-2020] Carrier

description: This dataset page includes some of the tables from the Medicare Data in PHS's possession. Other Medicare tables are included on other dataset pages on the PHS Data Portal. Depending upon your research question and your DUA with CMS, you may only need tables from a subset of the Medicare dataset pages, or you may need tables from all of them.

The location of each of the Medicare tables (i.e. a chart of which tables are included in each Medicare dataset page) is shown [here](<https://docs.google.com/spreadsheets/d/1C7EuUD-D-2K8eWD9aECAyk1B0itecp7fvev9zRZMEgw/edit?usp=sharing>).


description: #Before Manuscript Submission  
**All manuscripts** (and other items you'd like to publish) **must be submitted to**

**support@stanfordphs.freshdesk.com** for approval prior to journal submission.

We will check your cell sizes and citations.



For more information about how to cite PHS and PHS datasets, please visit:

https:/phsdocs.developerhub.io/need-help/citing-phs-data-core


description: #Documentation  
The **Medicare Carrier (Encounter)** file includes Medicare Advantage plan paid records for professional providers, including physicians, physician assistants, clinical social workers, nurse practitioners.

Records for some organizational providers are also found in the Carrier (Encounter) file. Examples include independent clinical laboratories, ambulance providers, freestanding ambulatory surgical centers and freestanding radiology centers.



The **Carrier File** includes [fee-for-service](<https://resdac.org/glossary#5036>)**claims** submitted by professional providers, including physicians, physician assistants, clinical social workers, nurse practitioners. The Claims file is based on information from the [CMS claim form 1500](<https://resdac.org/glossary#5061>)

Claims for some organizational providers, such as free-standing facilities are also found in the Carrier Claims File. Examples include independent clinical laboratories, ambulance providers, free-standing ambulatory surgical centers and free-standing radiology centers.

Researchers rarely use these files alone.
DOI: 10.5517/ccdc.csd.cc2dlv95
title: CCDC 2222647: Experimental Crystal Structure Determination

description: Related Article: V.Makarov, N.Monakhova, V.Tafeenko|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3s3l
title: CCDC 2357119: Experimental Crystal Structure Determination

description: Related Article: Qi-Fa Chen, Yao Xiao, Kai Hua, Hong-Tao Zhang, Ming-Tian Zhang|2025|J.Am.Chem.Soc.|147|14504|doi:10.1021/jacs.5c01406
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3sbt
title: CCDC 2357126: Experimental Crystal Structure Determination

description: Related Article: Qi-Fa Chen, Yao Xiao, Kai Hua, Hong-Tao Zhang, Ming-Tian Zhang|2025|J.Am.Chem.Soc.|147|14504|doi:10.1021/jacs.5c01406
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3wn7
title: CCDC 2357229: Experimental Crystal Structure Determination

description: Related Article: Qi-Fa Chen, Yao Xiao, Kai Hua, Hong-Tao Zhang, Ming-Tian Zhang|2025|J.Am.Chem.Soc.|147|14504|doi:10.1021/jacs.5c01406
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k3wq9
title: CCDC 2357231: Experimental Crystal Structure Determination

description: Related Article: Qi-Fa Chen, Yao Xiao, Kai Hua, Hong-Tao Zhang, Ming-Tian Zhang|2025|J.Am.Chem.Soc.|147|14504|doi:10.1021/jacs.5c01406
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k96rv
title: CCDC 2362347: Experimental Crystal Structure Determination

description: Related Article: Benjamin C. Milgram, Raymond A. Pagliarini, Deanna R. Borrelli, Erin O’Hearn, Michael R. Huff, Brendon Ladd, Natasja Brooijmans, Jack A. Henderson, Brendan J. Hilbert, Weixue Wang, Takahiro Ito, Philip Jonsson, Erica L. Jackson, Darrin D. Stuart, Angel Guzman-Perez|2025|J.Med.Chem.|68|2403|doi:10.1021/acs.jmedchem.4c02377
description: Related Article: Benjamin C. Milgram, Raymond A. Pagliarini, Deanna R. Borrelli, Erin O’Hearn, Michael R. Huff, Brendon Ladd, Natasja Brooijmans, Weixue Wang, Takahiro Ito, Philip Jonsson, Erica L. Jackson, Darrin D. Stuart, Angel Guzman-Perez Jack A. Henderson, Brendan J Hilbert, |2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.