cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.33rq371
title: Data from: Potential limitations of behavioral plasticity and the role of egg relocation in climate change mitigation for a thermally-sensitive endangered species

description: Anthropogenic climate change is widely considered a major threat to global
 biodiversity, such that the ability of a species to adapt will determine
 its likelihood of survival. Egg-burying reptiles that exhibit
 temperature-dependent sex determination, such as critically endangered
 hawksbill turtles (Eretmochelys imbricata), are particularly vulnerable to
 changes in thermal regimes because nest temperatures affect offspring sex,
 fitness, and survival. It is unclear whether hawksbills possess sufficient
 behavioral plasticity of nesting traits (i.e., redistribution of nesting
 range, shift in nesting phenology, changes in nest-site selection, and
 adjustment of nest depth) to persist within their climatic niche or
 whether accelerated changes in thermal conditions of nesting beaches will
 outpace phenotypic adaption and require human intervention. For these
 reasons, we estimated sex ratios and physical condition of hatchling
 hawksbills under natural and manipulated conditions and generated and
 analyzed thermal profiles of hawksbill nest environments within highly
 threatened mangrove ecosystems at Bahía de Jiquilisco, El Salvador and
 Estero Padre Ramos, Nicaragua. Hawksbill clutches protected in situ at
 both sites incubated at higher temperatures, yielded lower hatching
 success, produced a higher percentage of female hatchlings, and produced
 less fit offspring than clutches relocated to hatcheries. We detected
 cooler sand temperatures in woody vegetation (i.e., coastal forest and
 small-scale plantations of fruit trees) and hatcheries than in other
 monitored nest environments, with higher temperatures at the deeper depth.
 Our findings indicate that mangrove ecosystems present a number of
 biophysical (e.g., insular nesting beaches, shallow water table) and
 human-induced (e.g., physical barriers, deforestation) constraints that,
 when coupled with the unique life history of hawksbills in this region,
 may limit behavioral compensatory responses by the species to projected
 temperature increases at nesting beaches. We contend that egg relocation
 can contribute significantly to recovery efforts in a changing climate
 under appropriate circumstances.
description: Liles et al._hawksbill
 hatchling and temperature dataLiles et al.
 EcolEvol_Dryad.xlsx
DOI: 10.5061/dryad.s5t3vm8
title: Data from: Inferring introgression using RADseq and DFOIL: power and pitfalls revealed in a case study of spiny lizards (Sceloporus)

description: Introgression is now commonly reported in studies across the Tree of Life,
 aided by recent advancements in data collection and analysis.
 Nevertheless, researchers working with non‐model species lacking reference
 genomes may be stymied by a mismatch between available resources and
 methodological demands. In this study, we demonstrate a fast and simple
 approach for inferring introgression using RADseq data, and apply it to a
 case study involving spiny lizards (Sceloporus) from northeastern México.
 First, we find evidence for recurrent mtDNA introgression between the two
 focal species based on patterns of mito‐nuclear discordance. We then test
 for nuclear introgression by exhaustively applying the “five‐taxon”
 D‐statistic (DFOIL) to all relevant individuals sampled for RADseq data.
 In our case, this exhaustive approach (dubbed “ExDFOIL”) entails testing
 up to ~250,000 unique four‐taxon combinations of individuals across
 species. To facilitate use of this ExDFOIL approach, we provide scripts
 for many relevant tasks, including the selection of appropriate four‐taxon
 combinations, execution of DFOIL tests in parallel, and visualization of
 introgression results in phylogenetic and geographic space. Using ExDFOIL,
 we find evidence for ancient introgression between the focal species.
 Furthermore, we reveal geographic variation in patterns of introgression
 that is consistent with patterns of mito‐nuclear discordance and with
 recurrent introgression. Overall, our study demonstrates that the
 combination of DFOIL and RADseq data can effectively detect introgression
 under a variety of sampling conditions (for individuals, populations, and
 loci). Importantly, we also find evidence that batch‐specific error and
 linkage in RADseq data may mislead inferences of introgression under
 certain conditions.
description: DryadThis includes sequence
 alignments, phylogenetic trees, and other miscellaneous files described in
 the "readme.txt" in the directory
 "Dryad/"
DOI: 10.5061/dryad.qk653b3
title: Data from: Cryptic genetic variation shapes the adaptive evolutionary potential of enzymes

description: Genetic variation among orthologous proteins can cause cryptic phenotypic
 properties that only manifest in changing environments. Such variation may
 impact the evolvability of proteins, but the underlying molecular basis
 remains unclear. Here, we performed comparative directed evolution of four
 orthologous metallo-β-lactamases toward a new function and found that
 different starting genotypes evolved to distinct evolutionary outcomes.
 Despite a low initial fitness, one ortholog reached a significantly higher
 fitness plateau than its counterparts, via increasing catalytic activity.
 By contrast, the ortholog with the highest initial activity evolved to a
 less-optimal and phenotypically distinct outcome through changes in
 expression, oligomerization and activity. We show how cryptic molecular
 properties and conformational variation of active site residues in the
 initial genotypes cause epistasis, that could lead to distinct
 evolutionary outcomes. Our work highlights th e importance of
 understanding the molecular details that connect genetic variation to
 protein function to improve the prediction of protein evolution.
description: Representative MD
 structures and setup filesThe data package
 contains: 1. PDB files with representative structures of top clusters,
 with clustering performed using RMSD as a similarity measure between the
 structures in simulated trajectories. 2. Topologies, input structures and
 files containing additional parameters and settings used in the
 simulations for each simulated system. 3. Sample inputs for a single MD
 run. Detailed description of the contents of the data package can be found
 in the README file.Dryad_package.zip
DOI: 10.5061/dryad.3kf35s5
title: Data from: Faster migration in autumn than in spring: seasonal migration patterns and non-breeding distribution of Icelandic Whimbrels Numenius phaeopus islandicus

description: Migration is fundamental in the life of many birds and entails significant
 energetic and time investments. Given the importance of arrival time in
 the breeding area and the relatively short period available to reproduce
 (particularly at high latitudes), it is expected that birds reduce spring
 migration duration to a greater extent than autumn migration, assuming
 that pressure to arrive into the wintering area might be relaxed. This has
 previously been shown for several avian groups, but recent evidence from
 four tracked Icelandic Whimbrels (Numenius phaeopus islandicus), a long
 distance migratory wader, suggests that this subspecies tends to migrate
 faster in autumn than in spring. Here, we (1) investigate differences in
 seasonal migration duration, migration speed and ground speed of Whimbrels
 using 56 migrations from 19 individuals tracked with geolocators and (2)
 map the migration routes, wintering and stopover areas for this
 population. Tracking methods only provide temporal information on the
 migration period between departure and arrival. However, migration starts
 with the fuelling that takes place ahead of departure. Here we estimate
 the period of first fuelling using published fuel deposition rates and
 thus explore migration speed using tracking data. We found that migration
 duration was shorter in autumn than in spring. Migration speed was higher
 in autumn, with all individuals undertaking a direct flight to the
 wintering areas, while in spring most made a stopover. Wind patterns could
 drive Whimbrels to stop in spring, but be more favourable during autumn
 migration and allow a direct flight. Additionally, the stopover might
 allow the appraisal of weather conditions closer to the breeding areas
 and/or improve body condition in order to arrive at the breeding sites
 with reserves.
description: raw_positionsTime stamps from the light data defined by the threshold method and derived locations for each bird. We appreciate that anyone interested in using these data contacts the authors.temp_cond_wetsTemperature, conductivity and wet data for each individual. We appreciate that anyone interested in using these data contacts the authors.
DOI: 10.15468/dl.qm9d3b
title: Occurrence Download

description: A dataset containing 12263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-11.06432 35.60716,3.79108 35.60716,3.79108 44.30701,-11.06432 44.30701,-11.06432 35.60716))",
 "TaxonKey is Mustela vison"
 ]
}

 The dataset includes 12263 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009476-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fd5b4b
title: Occurrence Download

description: A dataset containing 338270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squamata",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 338270 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009439-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76bv29
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Michelia fujianensis"
 ]
}

 The dataset includes 34 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009477-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30601193.v1
title: <b>Identification of circRNA</b><b>s</b><b>and construction </b><b>of a</b><b>circRNA-</b><b>related ceRNA</b><b> </b><b>n</b><b>etwork in </b><b>c</b><b>oronary </b><b>a</b><b>rtery </b><b>d</b><b>isease</b>

description: origin date
DOI: 10.15468/dl.c5uvt5
title: Occurrence Download

description: A dataset containing 11607 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Footprint WKT mismatch, Country mismatch, Country derived from coordinates, Continent derived from coordinates, Recorded date invalid, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, Multimedia URI invalid, References URI invalid, Occurrence status unparsable, Occurrence status inferred from individual count)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lactuca sativa",
 "Year 1950-2025"
 ]
}

 The dataset includes 11607 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007363-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2nww0g
title: CCDC 2469646: Experimental Crystal Structure Determination

description: Related Article: Vladislav O. Golfarb-Abramov, Anastasia V. Kazennova, Elizaveta I. Basanova, Olga A. Serova, Nikolai I. Bormotov, Larisa N. Shishkina, Vyacheslav I. Krasnov, Dmitriy N. Polovyanenko, Ivan A. Moskalev, Alexey Yu. Fedorov, Sergey G. Arkhipov, Margarita G. Ilyina, Sophia S. Borisevich, Olga I. Yarovaya, Polina A. Nikitina|2025|New J.Chem.|49|19699|doi:10.1039/d5nj03203b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nww1h
title: CCDC 2469647: Experimental Crystal Structure Determination

description: Related Article: Vladislav O. Golfarb-Abramov, Anastasia V. Kazennova, Elizaveta I. Basanova, Olga A. Serova, Nikolai I. Bormotov, Larisa N. Shishkina, Vyacheslav I. Krasnov, Dmitriy N. Polovyanenko, Ivan A. Moskalev, Alexey Yu. Fedorov, Sergey G. Arkhipov, Margarita G. Ilyina, Sophia S. Borisevich, Olga I. Yarovaya, Polina A. Nikitina|2025|New J.Chem.|49|19699|doi:10.1039/d5nj03203b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nww2j
title: CCDC 2469648: Experimental Crystal Structure Determination

description: Related Article: Vladislav O. Golfarb-Abramov, Anastasia V. Kazennova, Elizaveta I. Basanova, Olga A. Serova, Nikolai I. Bormotov, Larisa N. Shishkina, Vyacheslav I. Krasnov, Dmitriy N. Polovyanenko, Ivan A. Moskalev, Alexey Yu. Fedorov, Sergey G. Arkhipov, Margarita G. Ilyina, Sophia S. Borisevich, Olga I. Yarovaya, Polina A. Nikitina|2025|New J.Chem.|49|19699|doi:10.1039/d5nj03203b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nww3k
title: CCDC 2469649: Experimental Crystal Structure Determination

description: Related Article: Vladislav O. Golfarb-Abramov, Anastasia V. Kazennova, Elizaveta I. Basanova, Olga A. Serova, Nikolai I. Bormotov, Larisa N. Shishkina, Vyacheslav I. Krasnov, Dmitriy N. Polovyanenko, Ivan A. Moskalev, Alexey Yu. Fedorov, Sergey G. Arkhipov, Margarita G. Ilyina, Sophia S. Borisevich, Olga I. Yarovaya, Polina A. Nikitina|2025|New J.Chem.|49|19699|doi:10.1039/d5nj03203b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nww4l
title: CCDC 2469650: Experimental Crystal Structure Determination

description: Related Article: Vladislav O. Golfarb-Abramov, Anastasia V. Kazennova, Elizaveta I. Basanova, Olga A. Serova, Nikolai I. Bormotov, Larisa N. Shishkina, Vyacheslav I. Krasnov, Dmitriy N. Polovyanenko, Ivan A. Moskalev, Alexey Yu. Fedorov, Sergey G. Arkhipov, Margarita G. Ilyina, Sophia S. Borisevich, Olga I. Yarovaya, Polina A. Nikitina|2025|New J.Chem.|49|19699|doi:10.1039/d5nj03203b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nww5m
title: CCDC 2469651: Experimental Crystal Structure Determination

description: Related Article: Vladislav O. Golfarb-Abramov, Anastasia V. Kazennova, Elizaveta I. Basanova, Olga A. Serova, Nikolai I. Bormotov, Larisa N. Shishkina, Vyacheslav I. Krasnov, Dmitriy N. Polovyanenko, Ivan A. Moskalev, Alexey Yu. Fedorov, Sergey G. Arkhipov, Margarita G. Ilyina, Sophia S. Borisevich, Olga I. Yarovaya, Polina A. Nikitina|2025|New J.Chem.|49|19699|doi:10.1039/d5nj03203b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17633/rd.brunel.30693878
title: Numerical model predictions of CO₂ injection well integrity

description: This data relates to numerical analyses of CO₂ injection well integrity, focusing on degradation of cement sheath bonds with the casing and caprock. The cement sheath and caprock are modelled as thermo-poroelastic materials subject to coupled thermal, hydraulic, and mechanical (THM) behaviour. Debonding at cement-casing and cement-formation interfaces is explicitly modelled in the finite element formulation using a cohesive zone model. The presented data includes predictions of the THM behaviour of the well system alongside the timeframe of damage development and the apertures of any resulting microannuli for a selection of cases presented in the linked publication (please contact the corresponding author for further information).These findings contribute to robust CO₂ storage risk assessments and support planning of corrective measures to ensure long-term wellbore integrity during geological CO₂ storage.
DOI: 10.17633/rd.brunel.30693878.v1
title: Numerical model predictions of CO₂ injection well integrity

description: This data relates to numerical analyses of CO₂ injection well integrity, focusing on degradation of cement sheath bonds with the casing and caprock. The cement sheath and caprock are modelled as thermo-poroelastic materials subject to coupled thermal, hydraulic, and mechanical (THM) behaviour. Debonding at cement-casing and cement-formation interfaces is explicitly modelled in the finite element formulation using a cohesive zone model. The presented data includes predictions of the THM behaviour of the well system alongside the timeframe of damage development and the apertures of any resulting microannuli for a selection of cases presented in the linked publication (please contact the corresponding author for further information).These findings contribute to robust CO₂ storage risk assessments and support planning of corrective measures to ensure long-term wellbore integrity during geological CO₂ storage.
DOI: 10.15468/dl.juvyy7
title: Occurrence Download

description: A dataset containing 501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((4.54231350017438 52.13271442950028,4.5628966494244665 52.13271442950028,4.5628966494244665 52.15329757875037,4.54231350017438 52.15329757875037,4.54231350017438 52.13271442950028))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ardea cinerea",
 "Year 2018-2025"
 ]
}

 The dataset includes 501 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007365-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swb7ms
title: Occurrence Download

description: A dataset containing 29701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Africa",
 "Country is Namibia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 29701 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007364-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7hh66
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Protobothrops jerdonii)",
 "Country is one of (China, India, Indonesia, Pakistan, Bangladesh, Japan, Philippines, Viet Nam, Türkiye, Iran (Islamic Republic of), Thailand, Myanmar, Korea, Republic of, Korea (Democratic People’s Republic of), Iraq, Afghanistan, Saudi Arabia, Uzbekistan, Malaysia, Yemen, Nepal, Sri Lanka, Kazakhstan, Syrian Arab Republic, Cambodia, Jordan, Azerbaijan, United Arab Emirates, Tajikistan, Israel, Lao People’s Democratic Republic, Lebanon, Kyrgyzstan, Turkmenistan, Singapore, Oman, Palestine, State of, Kuwait, Georgia, Mongolia, Armenia, Qatar, Bahrain, Timor-Leste, Cyprus, Bhutan, Maldives, Brunei Darussalam)",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 127 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007366-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/tqenqh
title: Dataset from the structural, spectral, electrochemical, photoluminescence, electroluminescence and DFTstudies of platinum(II) compounds with 2,2’,6’,2”-terpyridine derivatives

description: This dataset contains data from the analyses published in the article entitled: “From stimuli-responsive emission to a rare aggregation induced emission effect in platinum(ii) terpyridyl complexes”, published in: Dalton Transactions, 2025, DOI: 10.1039/D5DT01391G. Received: 13 June 2025 / Accepted: 30 September 2025 / First published: 10 November 2025.These data includes experimental data files of structural (SXRD and PXRD), spectral (HRMS, FTIR, UV-Vis, NMR), electrochemical (CV), photoluminescence studies (Luminescence_298K, Luminescence_77K, Cryostat_experiment, Viscosity_experiment, Acid-base_experiment, AIE_experiment) and electroluminescence studies (Electroluminescence), together with quantum mechanical calculations (input files for DFT and TD-DFT calculations) for platinum(II) complexes (A-C) with with 2,2’,6’,2”-terpyridines substituted at position 4’ by phenyl linked electron donating groups prepared in the Institute of Chemistry, Faculty of Science and Technology, University of Silesia in Katowice, Katowice, Poland.Please consult the README.txt file for additional information.
DOI: 10.24403/jp.1512705
title: Lautraum – Leseraum – Lösungsraum : Auf einen Espresso mit der Professorin Naika Foroutan zur Atmosphäre von Bibliotheken