cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7140815
title: Using citizen science to obtain data on large, floating gelatinous spheres from NE Atlantic, attributed to egg mass of ommastrephid squid (Oegopsida, Cephalopoda, Mollusca)

description: A total of 27 large, gelatinous spherical masses observed in coastal Norwegian waters from Nordland to Aust-Agder Counties in Norway, and off Lysekil in Sweden, Muljica Island in Croatia, Gulf of Naples in Italy, Reqqa Point in Malta, and Saint Mandrier in France, during the months of April to September 2001 to 2017, are reported. Individual spheres measured 0.3–2 m in diameter, averaging one metre (<i>n</i> = 24, ±0.53 m), with all but four sighted in suspension in the water column between 0.5 and 52 m depth, in water temperatures ranging between 10–21°C. About half of all spheres contained a yellow-red streak through their gelatinous core. Tissue samples were not obtained. We attribute these gelatinous spheres to the egg masses of squid (Cephalopoda, Oegopsida), and most likely to the ommastrephid <i>Todarodes sagittatus</i>, given similarities with egg masses of <i>T. pacificus</i>.
DOI: 10.6084/m9.figshare.7140815.v1
title: Using citizen science to obtain data on large, floating gelatinous spheres from NE Atlantic, attributed to egg mass of ommastrephid squid (Oegopsida, Cephalopoda, Mollusca)

description: A total of 27 large, gelatinous spherical masses observed in coastal Norwegian waters from Nordland to Aust-Agder Counties in Norway, and off Lysekil in Sweden, Muljica Island in Croatia, Gulf of Naples in Italy, Reqqa Point in Malta, and Saint Mandrier in France, during the months of April to September 2001 to 2017, are reported. Individual spheres measured 0.3–2 m in diameter, averaging one metre (<i>n</i> = 24, ±0.53 m), with all but four sighted in suspension in the water column between 0.5 and 52 m depth, in water temperatures ranging between 10–21°C. About half of all spheres contained a yellow-red streak through their gelatinous core. Tissue samples were not obtained. We attribute these gelatinous spheres to the egg masses of squid (Cephalopoda, Oegopsida), and most likely to the ommastrephid <i>Todarodes sagittatus</i>, given similarities with egg masses of <i>T. pacificus</i>.
DOI: 10.7284/122745
title: TSG (Thermosalinograph) data collected during research cruise WS15195 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140785
title: Figure 6

description: Optical, SEM and X-ray analysis of new cylinder liner of Honda GX270 engine (a) Optical microscopy view; (b), (c) SEM images; (d), (e) X-Ray analysis. (e) elemental analysis (f) is mapping of new cylinder liner.
DOI: 10.7284/122765
title: Multiplexed data collected during research cruise WS15208 using a Miami VIDS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/122767
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS15208 using a Hawaii UHDAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140686
title: Figure 3

description: Optical, SEM and X-ray analysis of unused (uncoated) second piston ring of Honda GX270 Engine (a) Optical microscopy view; (b), (c), (d) SEM images; (e), (f), (g) X-Ray analysis. (f) G1 and (g) G2 are elemental analysis where (e) and (f) are mapping of new second piston ring from which barium is removed by acidic method
DOI: 10.7284/122764
title: Anemometer data collected during research cruise WS15208 using a RM Young 05106 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140680
title: Phum_OR502AA_v1_genome_assembly

description: Genome fasta and gff3 files
DOI: 10.6084/m9.figshare.7140686.v2
title: Figure 3

description: Optical, SEM and X-ray analysis of unused (uncoated) second piston ring of Honda GX270 Engine (a) Optical microscopy view; (b), (c), (d) SEM images; (e), (f), (g) X-Ray analysis. (f) G1 and (g) G2 are elemental analysis where (e) and (f) are mapping of new second piston ring from which barium is removed by acidic method
DOI: 10.7284/122762
title: Fluorometer data collected during research cruise WS15208 using a Turner Cyclops-7 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140680.v1
title: Phum_OR502AA_v1_genome_assembly

description: Genome fasta and gff3 files
DOI: 10.6084/m9.figshare.7140674
title: Phum_OR502AA_v1_functional_annotation

description: Functional annotation, protein and transcript fasta files
DOI: 10.7284/122755
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS15208 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140674.v1
title: Phum_OR502AA_v1_functional_annotation

description: Functional annotation, protein and transcript fasta files
DOI: 10.6084/m9.figshare.7140671
title: Phumuli_OR502AA_mt_genome

description: P. humuli mitochondrial genome
DOI: 10.7284/122756
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS15208 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140671.v1
title: Phumuli_OR502AA_mt_genome

description: P. humuli mitochondrial genome
DOI: 10.6084/m9.figshare.7140545
title: Dataset for: Bioenergetics-Adverse Outcome Pathway (AOP): linking organismal and suborganismal energetic endpoints to adverse outcomes.

description: Adverse outcome pathways (AOPs) link toxicity across levels of biological organization, and thereby facilitate the development of suborganismal responses predictive of whole-organism toxicity and provide the mechanistic information necessary for science-based extrapolation to population-level effects. Thus far AOPs have characterized various acute and chronic toxicity pathways; however, the potential for AOPs to explicitly characterize indirect, energy-mediated effects from toxicants has yet to be fully explored. Indeed, although exposure to contaminants can alter an organism’s energy budget, energetic endpoints are rarely incorporated into ecological risk assessment because there is not an integrative framework for linking energetic effects to organismal endpoints relevant to risk assessment (e.g., survival, reproduction, growth). In the present analysis, we developed a generalized bioenergetics-AOP in an effort to make better use of energetic endpoints in risk assessment, specifically exposure scenarios that generate an energetic burden to organisms. To evaluate empirical support for a bioenergetics-AOP, we analyzed published data for links between energetic endpoints across levels of biological organization. We found correlations between (1) cellular energy allocation and whole-animal growth and (2) metabolic rate and scope for growth. Moreover, we reviewed literature linking energy availability to non-traditional toxicological endpoints (e.g., locomotor performance), and found evidence for toxicants impairing aerobic performance and activity. We conclude by highlighting current knowledge gaps that should be addressed in order to develop specific bioenergetics-AOPs.
DOI: 10.7284/122757
title: Gyrocompass data collected during research cruise WS15208 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140542
title: OWC and AP Data Set.sav

description: Through this dataset we examined the impact of occupational overwork climate (OWC) on academic effort (AEF) and performance (ADV) of working students: moderating role of academic resilience (ARE). We found that OWC is negatively associated with AEF and ADV and that ARE moderates the relationship between OWC, AEF and ADV.
DOI: 10.6084/m9.figshare.7140545.v1
title: Dataset for: Bioenergetics-Adverse Outcome Pathway (AOP): linking organismal and suborganismal energetic endpoints to adverse outcomes.

description: Adverse outcome pathways (AOPs) link toxicity across levels of biological organization, and thereby facilitate the development of suborganismal responses predictive of whole-organism toxicity and provide the mechanistic information necessary for science-based extrapolation to population-level effects. Thus far AOPs have characterized various acute and chronic toxicity pathways; however, the potential for AOPs to explicitly characterize indirect, energy-mediated effects from toxicants has yet to be fully explored. Indeed, although exposure to contaminants can alter an organism’s energy budget, energetic endpoints are rarely incorporated into ecological risk assessment because there is not an integrative framework for linking energetic effects to organismal endpoints relevant to risk assessment (e.g., survival, reproduction, growth). In the present analysis, we developed a generalized bioenergetics-AOP in an effort to make better use of energetic endpoints in risk assessment, specifically exposure scenarios that generate an energetic burden to organisms. To evaluate empirical support for a bioenergetics-AOP, we analyzed published data for links between energetic endpoints across levels of biological organization. We found correlations between (1) cellular energy allocation and whole-animal growth and (2) metabolic rate and scope for growth. Moreover, we reviewed literature linking energy availability to non-traditional toxicological endpoints (e.g., locomotor performance), and found evidence for toxicants impairing aerobic performance and activity. We conclude by highlighting current knowledge gaps that should be addressed in order to develop specific bioenergetics-AOPs.
DOI: 10.6084/m9.figshare.7140434
title: IOT SCENARIOS_repeated_measures_v1.0.sav

description: We release our dataset to support and encourage further research on crowd-created IoT scenarios. Data set contains 306 IoT scenarios containing more than 20 attributes that were carefully extracted by analyzing each IoT scenario in detail by two authors. Data set was provided in two formats: Excel and SAV (SPSS)
DOI: 10.6084/m9.figshare.7140542.v1
title: OWC and AP Data Set.sav

description: Through this dataset we examined the impact of occupational overwork climate (OWC) on academic effort (AEF) and performance (ADV) of working students: moderating role of academic resilience (ARE). We found that OWC is negatively associated with AEF and ADV and that ARE moderates the relationship between OWC, AEF and ADV.
DOI: 10.7284/122763
title: Hygrometer data collected during research cruise WS15208 using a RM Young 41372VC instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140443
title: Supplementary Material for: Retrospective Analysis of 91 Kaposi’s Sarcoma Cases: A Single-Center Experience and Review of the Literature

description: <b><i>Background:</i></b> Kaposi’s sarcoma (KS) is a multifocal angioproliferative tumor involving primarily the skin. <b><i>Objective:</i></b> The aim of this study was to describe the clinical, demographic, histopathological characteristics, treatment modalities, and outcome of 91 KS patients, and compare them with other contemporary research. <b><i>Methods:</i></b> Medical records of 91 KS patients followed between January 2005 and September 2017 were evaluated retrospectively. <b><i>Results:</i></b> Most of our patients were male (male-to-female ratio was 4.05). The median age at diagnosis was 69 years (range, 6–93 years). The duration of the lesions varied between 3 and 25 years. The lower extremities were the most commonly involved area (51.6%). Of the 91 patients, classic type KS was seen in 75 patients. Radiotherapy was used successfully in approximately half of our patients. Recurrence was observed in approximately one third of the patients. All KS patients in this study except 1 were classic KS. <b><i>Conclusion:</i></b> The clinical and demographic characteristics of our patients were compatible with the previous literature suggesting that KS is a tumor that tends to be limited to the skin. Close follow-up of patients is important to monitor for recurrence. This is the largest report from Turkey to date.
DOI: 10.6084/m9.figshare.7140443.v1
title: Supplementary Material for: Retrospective Analysis of 91 Kaposi’s Sarcoma Cases: A Single-Center Experience and Review of the Literature

description: <b><i>Background:</i></b> Kaposi’s sarcoma (KS) is a multifocal angioproliferative tumor involving primarily the skin. <b><i>Objective:</i></b> The aim of this study was to describe the clinical, demographic, histopathological characteristics, treatment modalities, and outcome of 91 KS patients, and compare them with other contemporary research. <b><i>Methods:</i></b> Medical records of 91 KS patients followed between January 2005 and September 2017 were evaluated retrospectively. <b><i>Results:</i></b> Most of our patients were male (male-to-female ratio was 4.05). The median age at diagnosis was 69 years (range, 6–93 years). The duration of the lesions varied between 3 and 25 years. The lower extremities were the most commonly involved area (51.6%). Of the 91 patients, classic type KS was seen in 75 patients. Radiotherapy was used successfully in approximately half of our patients. Recurrence was observed in approximately one third of the patients. All KS patients in this study except 1 were classic KS. <b><i>Conclusion:</i></b> The clinical and demographic characteristics of our patients were compatible with the previous literature suggesting that KS is a tumor that tends to be limited to the skin. Close follow-up of patients is important to monitor for recurrence. This is the largest report from Turkey to date.
DOI: 10.6084/m9.figshare.7140428
title: SMART_HOME_SCENARIOS_27_09-2018.xlsx

description: We release our dataset to support and encourage further research on crowd-created IoT scenarios. Data set contains 306 IoT scenarios containing more than 20 attributes that were carefully extracted by analyzing each IoT scenario in detail by two authors. Data set was provided in two formats: Excel and SAV (SPSS)
DOI: 10.6084/m9.figshare.7140431
title: IOT_SCENARIOS_single_measures_v1.0.sav

description: We release our dataset to support and encourage further research on crowd-created IoT scenarios. Data set contains 306 IoT scenarios containing more than 20 attributes that were carefully extracted by analyzing each IoT scenario in detail by two authors. Data set was provided in two formats: Excel and SAV (SPSS).
DOI: 10.6084/m9.figshare.7140431.v1
title: IOT_SCENARIOS_single_measures_v1.0.sav

description: We release our dataset to support and encourage further research on crowd-created IoT scenarios. Data set contains 306 IoT scenarios containing more than 20 attributes that were carefully extracted by analyzing each IoT scenario in detail by two authors. Data set was provided in two formats: Excel and SAV (SPSS).
DOI: 10.7284/122761
title: INS (Inertial Navigation System) data collected during research cruise WS15208 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140428.v1
title: SMART_HOME_SCENARIOS_27_09-2018.xlsx

description: We release our dataset to support and encourage further research on crowd-created IoT scenarios. Data set contains 306 IoT scenarios containing more than 20 attributes that were carefully extracted by analyzing each IoT scenario in detail by two authors. Data set was provided in two formats: Excel and SAV (SPSS)
DOI: 10.7284/122760
title: Rain Gauge data collected during research cruise WS15208 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140383
title: Generalisation of threat expectancy increases with time

description: Excessive fear generalisation is a feature characteristic of clinical anxiety and has been linked to its aetiology. Previous animal studies have shown that the mere passage of time increases fear generalisation and that brief exposure to training cues prior to long-term testing reverses this effect. The current study examined these phenomena in humans. Healthy participants learned the relationship between the presentation of a picture of a neutral male face and the delivery of a mild shock. One group was immediately tested with a novel picture of a somewhat different male face (generalisation test). Another group was tested one week later. A third group was also tested one week later and was additionally exposed to the training picture prior to testing. During picture presentations, shock-expectancy ratings were obtained as a measure of fear. Fear generalisation increased from the immediate test to the 1-week follow-up test. This result could not be attributed to level of neuroticism or a general increase in fear (incubation). Furthermore, the time-dependent increase in fear generalisation vanished following brief exposure to the training picture. Results indicate that human fear generalisation is a temporally dynamic process and that memory for stimulus details can be re-established following a reminder treatment.
DOI: 10.7284/122766
title: Singlebeam Echosounder data collected during research cruise WS15208 using a Knudsen 3260 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140383.v2
title: Generalisation of threat expectancy increases with time

description: Excessive fear generalisation is a feature characteristic of clinical anxiety and has been linked to its aetiology. Previous animal studies have shown that the mere passage of time increases fear generalisation and that brief exposure to training cues prior to long-term testing reverses this effect. The current study examined these phenomena in humans. Healthy participants learned the relationship between the presentation of a picture of a neutral male face and the delivery of a mild shock. One group was immediately tested with a novel picture of a somewhat different male face (generalisation test). Another group was tested one week later. A third group was also tested one week later and was additionally exposed to the training picture prior to testing. During picture presentations, shock-expectancy ratings were obtained as a measure of fear. Fear generalisation increased from the immediate test to the 1-week follow-up test. This result could not be attributed to level of neuroticism or a general increase in fear (incubation). Furthermore, the time-dependent increase in fear generalisation vanished following brief exposure to the training picture. Results indicate that human fear generalisation is a temporally dynamic process and that memory for stimulus details can be re-established following a reminder treatment.
DOI: 10.7284/122758
title: Water Temperature data collected during research cruise WS15208 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140374
title: Supplementary Material for: Brain Diffusion Imaging and Tractography to Distinguish Clinical Severity of Human <b><i>PLP1</i></b>-Related Disorders

description: <b><i>Aims:</i></b> We performed quantitative diffusion tensor imaging and brain tractography to distinguish clinical severity in a series of 35 patients with hypomyelinating <i>PLP1</i>-related disorders classified using the Motor Developmental Score according to the best motor function acquired before the age of 5 years and the gross motor function measure (GMFM) at the time of magnetic resonance imaging acquisition. <b><i>Methods:</i></b> We calculated fractional anisotropy and diffusivity values in 26 regions of interest and the numbers of fibers and volumes of hemisphere tractograms. Fiber bundles on tractograms were characterized according to 3 criteria: size, direction of main-stream fibers, and connectivity of bundles (extratelencephalic projections, commissural fibers, and intrahemispheric connections). <b><i>Results:</i></b> Age-adjusted multivariate analysis in 3 severity groups revealed increased isotropic diffusion in the superior cerebellar peduncle and grey matter in the most severe group, and larger tractogram volumes and increased numbers of fibers in the least severely affected group. Tractogram patterns showed preserved extratelencephalic projections and a main anterior-posterior aspect of intrahemispheric fibers in most patients, whereas interhemispheric connectivity was variable. The most severely affected and intermediate patients had less intrahemispheric connectivity, with a frequent predominant anterior-posterior direction of main-stream fibers. <b><i>Interpretation:</i></b> Diffusion tensor imaging and tractographic parameters can operate as biomarkers to distinguish clinical severity in <i>PLP1</i>-related disorders and could improve our understanding of hypomyelinating leukodystrophies.
DOI: 10.7284/122759
title: TSG (Thermosalinograph) data collected during research cruise WS15208 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7140356
title: Supplementary Material for: Catch Me if You Can: <b><i>Streptococcus pyogenes</i></b> Complement Evasion Strategies

description: The human host has evolved elaborate protection mechanisms to prevent infection from the billions of microorganisms to which it host is exposed and is home. One of these systems, complement, is an evolutionary ancient arm of innate immunity essential for combatting bacterial infection. Complement permits the efficient labelling of bacteria with opsonins, supports phagocytosis, and facilitates phagocyte recruitment to the site of infection through the production of chemoattractants. However, it is by no means perfect, and certain organisms engage in an evolutionary arms race with the host where complement has become a major target to promote immune evasion. <i>Streptococcus pyogenes</i> is a major human pathogen that causes significant morbidity and mortality globally. <i>S. pyogenes</i> is also a member of an elite group of bacterial pathogens possessing a sophisticated arsenal of virulence determinants capable of interfering with complement. In this review, we focus on these complement evasins, their mechanism of action, and their importance in disease progression. Finally, we highlight new therapeutic options for fighting <i>S. pyogenes</i>, by interfering with one of its main mechanisms of complement evasion.