cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14278/rodare.136
title: Ultrafast X-ray tomography raw-data of bubbly two-phase pipe flow around a semi-circular constriction

description: For the investigation of bubbly two-phase flow, which should serve as a future benchmark experiment for CFD code validation, an experimental study has been conducted at the <strong>T</strong>ransient Tw<strong>o-P</strong>hase <strong>Flow</strong> (TOPFLOW) facility at Helmholtz-Zentrum Dresden – Rossendorf (HZDR) using ultrafast electron beam X-ray tomography (UFXRAY). In this study, flow constrictions were installed into a pipe to create a generic three-dimensional flow field as an advanced test case for CFD codes. UFXRAY provide valueable data of the gas phase dynamics with high temporal and spatial resolution.

The provided data set contains tomography raw-data for the experimental series L30 that uses a <strong>semi-circular</strong> flow constriction with a blockage ratio of 0.5. 

For visualization, the data might be opend with Fiji. Therefore choose Import-&gt;Raw... In the following window specify "Image type" as 16-bit Unsigned, "Width" as 288 pixels and "Height" as 500 pixels for 2x1000Hz measurement or 200 pixels for 2x2500Hz measurement. Make sure that "Little-endian byte order" is checked. A data set contains image frames of both scanning planes in alternating order. Therefore, if only a single scanning plane is required, the offset and gap parameters need to be set to 288000 bytes for 2x1000Hz measurement or 115200 bytes for 2x2500Hz measurement.
description: This work is funded by the German Federal Ministry for Economic Affairs and Energy (BMWi) with the grant number 1501481 on the basis of a decision by the German Bundestag.
DOI: 10.14278/rodare.122
title: Ultrafast X-ray tomography raw-data of bubbly two-phase pipe flow around a semi-circular constriction

description: For the investigation of bubbly two-phase flow, which should serve as a future benchmark experiment for CFD code validation, an experimental study has been conducted at the <strong>T</strong>ransient Tw<strong>o-P</strong>hase <strong>Flow</strong> (TOPFLOW) facility at Helmholtz-Zentrum Dresden – Rossendorf (HZDR) using ultrafast electron beam X-ray tomography (UFXRAY). In this study, flow constrictions were installed into a pipe to create a generic three-dimensional flow field as an advanced test case for CFD codes. UFXRAY provide valueable data of the gas phase dynamics with high temporal and spatial resolution.

The provided data set contains tomography raw-data for the experimental series L30 that uses a <strong>semi-circular</strong> flow constriction with a blockage ratio of 0.5. 

For visualization, the data might be opend with Fiji. Therefore choose Import-&gt;Raw... In the following window specify "Image type" as 16-bit Unsigned, "Width" as 288 pixels and "Height" as 500 pixels for 2x1000Hz measurement or 200 pixels for 2x2500Hz measurement. Make sure that "Little-endian byte order" is checked. A data set contains image frames of both scanning planes in alternating order. Therefore, if only a single scanning plane is required, the offset and gap parameters need to be set to 288000 bytes for 2x1000Hz measurement or 115200 bytes for 2x2500Hz measurement.
description: This work is funded by the German Federal Ministry for Economic Affairs and Energy (BMWi) with the grant number 1501481 on the basis of a decision by the German Bundestag.
DOI: 10.15468/dl.fj9n29
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((145.492633 -36.750787, 145.492633 -36.753033, 145.494879 -36.753033, 145.494879 -36.750787, 145.492633 -36.750787))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066149-240626123714530/datasets/export for details.
DOI: 10.14278/rodare.127
title: Investigations on stationary measurements at COSMEA-I facility - CT part

description: This repository contains reconstructed and analysed CT data obtained from the COSMEA-I test facility that is operated under stationary operating conditions. Furthermore, a full CAD drawing set is provided.
DOI: 10.14278/rodare.126
title: Investigations on stationary measurements at COSMEA-I facility - CT part

description: This repository contains reconstructed and analysed CT data obtained from the COSMEA-I test facility that is operated under stationary operating conditions. Furthermore, a full CAD drawing set is provided.
DOI: 10.15468/dl.4xthdt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.660836 -32.37597, 149.660836 -32.382708, 149.663082 -32.382708, 149.663082 -32.37597, 149.660836 -32.37597))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066150-240626123714530/datasets/export for details.
DOI: 10.14278/rodare.76
title: Ultrafast X-ray tomography data set for the investigation of gas-liquid two-phase flows in an impeller of a centrifugal pump

description: In this study the behaviour of gas-liquid two-phase flow inside a centrifugal pump impeller is investigated using


 ultrafast X-ray computed tomography
 different rotational speed (1300 rpm, 1480 rpm, 1600 rpm)
 different inlet gas/liquid fractions
 different inlet gas-liquid flow regimes (disperse, swirling) 
description: The Project was founded by the German Federal Ministry of Education and Research (BMBF) under the funding code 02NUK023B.
DOI: 10.14278/rodare.75
title: Ultrafast X-ray tomography data set for the investigation of gas-liquid two-phase flows in an impeller of a centrifugal pump

description: In this study the behaviour of gas-liquid two-phase flow inside a centrifugal pump impeller is investigated using


 ultrafast X-ray computed tomography
 different rotational speed (1300 rpm, 1480 rpm, 1600 rpm)
 different inlet gas/liquid fractions
 different inlet gas-liquid flow regimes (disperse, swirling) 
description: The Project was founded by the German Federal Ministry of Education and Research (BMBF) under the funding code 02NUK023B.
DOI: 10.6084/m9.figshare.26657074
title: Additional file 2 of Patient-derived scaffolds representing breast cancer microenvironments influence chemotherapy responses in adapted cancer cells consistent with clinical features

description: Additional file 2: Table S1. Patient and clinico-pathological characteristics of the cohort used for creating patient-derived scaffold cultures with MCF7 or MDA-MB-231. Table S2. Primer list. Table S3. P-values of the Pearson correlation analyses between the drug fingerprints for each gene in the individual MCF7 PDSs treated with 5-FU and plotted Fig. 3C. Table S4. P-values of the Pearson correlation analyses between the drug fingerprints for each gene in the individual MCF7 PDSs treated with DOX and plotted in Fig. 3D. Table S5. P-values of the Pearson correlation analyses between the drug fingerprints for each gene in the individual MCF7 PDSs 5-FU versus DOX and plotted in Fig. 3E. Table S6. Median values and P-values of Mann–Whitney U comparison between gene expression in MCF7 patient-derived scaffolds and clinical parameters. Table S7. Univariate and multivariable cox-regression analyses of gene expression data from MCF7 cells grown in the patient-derived scaffolds following treatment with 5-fluorouracil or doxorubicin. Table S8. Log-rank tests of the Kaplan–Meier plots illustrating disease free survival in patient-derived scaffolds cultured with MCF7 and treated with 5-fluorouracil and doxorubicin. Table S9. P-values the Pearson correlation analyses between the drug fingerprints for each gene in the individual MDA-MB-231 PDSs 5-FU versus DOX and plotted in Fig. 5B. Table S10. P-values of the Pearson correlation analyses between the MCF7 and MDA-MB-231 drug fingerprints for each gene in the individual PDSs treated with 5-FU (top) or DOX (bottom) and plotted in Fig. S6C. Table S11. Median values and P-values of Mann–Whitney U comparison between gene expression in MDA-MB-231 patient-derived scaffolds and clinical parameters. Table S12. Univariate and multivariable cox-regression analyses in patient-derived scaffolds cultured with MDA-MB-231 following treatment with 5-fluorouracil and doxorubicin. Table S13. Table with P-values from log-rank tests of the Kaplan Meier plots illustrating disease-free survival in patient-derived scaffolds cultured with MDA-MB-231 and treated with 5-fluorouracil and doxorubicin.
DOI: 10.6084/m9.figshare.26657074.v1
title: Additional file 2 of Patient-derived scaffolds representing breast cancer microenvironments influence chemotherapy responses in adapted cancer cells consistent with clinical features

description: Additional file 2: Table S1. Patient and clinico-pathological characteristics of the cohort used for creating patient-derived scaffold cultures with MCF7 or MDA-MB-231. Table S2. Primer list. Table S3. P-values of the Pearson correlation analyses between the drug fingerprints for each gene in the individual MCF7 PDSs treated with 5-FU and plotted Fig. 3C. Table S4. P-values of the Pearson correlation analyses between the drug fingerprints for each gene in the individual MCF7 PDSs treated with DOX and plotted in Fig. 3D. Table S5. P-values of the Pearson correlation analyses between the drug fingerprints for each gene in the individual MCF7 PDSs 5-FU versus DOX and plotted in Fig. 3E. Table S6. Median values and P-values of Mann–Whitney U comparison between gene expression in MCF7 patient-derived scaffolds and clinical parameters. Table S7. Univariate and multivariable cox-regression analyses of gene expression data from MCF7 cells grown in the patient-derived scaffolds following treatment with 5-fluorouracil or doxorubicin. Table S8. Log-rank tests of the Kaplan–Meier plots illustrating disease free survival in patient-derived scaffolds cultured with MCF7 and treated with 5-fluorouracil and doxorubicin. Table S9. P-values the Pearson correlation analyses between the drug fingerprints for each gene in the individual MDA-MB-231 PDSs 5-FU versus DOX and plotted in Fig. 5B. Table S10. P-values of the Pearson correlation analyses between the MCF7 and MDA-MB-231 drug fingerprints for each gene in the individual PDSs treated with 5-FU (top) or DOX (bottom) and plotted in Fig. S6C. Table S11. Median values and P-values of Mann–Whitney U comparison between gene expression in MDA-MB-231 patient-derived scaffolds and clinical parameters. Table S12. Univariate and multivariable cox-regression analyses in patient-derived scaffolds cultured with MDA-MB-231 following treatment with 5-fluorouracil and doxorubicin. Table S13. Table with P-values from log-rank tests of the Kaplan Meier plots illustrating disease-free survival in patient-derived scaffolds cultured with MDA-MB-231 and treated with 5-fluorouracil and doxorubicin.
DOI: 10.6084/m9.figshare.26593592
title: Additional file 1 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 1: Assay descriptions of the public dataset comprising 88 assays.
DOI: 10.14278/rodare.55
title: Analysis of moulded wood tube structure using gamma-ray computed tomography

description: For the investigation of compressive load moulded wood tube gamma-ray CT has been applied at a 3 m long wood tube at different cross-sectional sections. CT data is normalized to the density of tap water with app. 22 °C temperature.
DOI: 10.14278/rodare.54
title: Analysis of moulded wood tube structure using gamma-ray computed tomography

description: For the investigation of compressive load moulded wood tube gamma-ray CT has been applied at a 3 m long wood tube at different cross-sectional sections. CT data is normalized to the density of tap water with app. 22 °C temperature.
DOI: 10.6084/m9.figshare.26593601.v1
title: Additional file 4 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 4: Hyperparameters considered for optimising Random Forests.
DOI: 10.6084/m9.figshare.26593595
title: Additional file 2 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 2: Assay types and readout types of Broad Institute dataset comprising 89 assays.
DOI: 10.14278/rodare.43
title: Analysis of flow patterns in a rotating packed bed using gamma-ray computed tomography

description: In this study, gamma-ray computed tomography is employed to quantify the liquid hold-up and its distribution in a rotating packed bed using:


 different insets
 different rotational speeds
 different fluid rate flows
DOI: 10.6084/m9.figshare.26593577
title: Additional file 1 of Screening and prioritising persistent, mobile and toxic chemicals: development and application of a robust scoring system

description: Additional file 1. The P,M,T-scores for the EINECS/REACH and RIWA list
DOI: 10.14278/rodare.42
title: Analysis of flow patterns in a rotating packed bed using gamma-ray computed tomography

description: In this study, gamma-ray computed tomography is employed to quantify the liquid hold-up and its distribution in a rotating packed bed using:


 different insets
 different rotational speeds
 different fluid rate flows
DOI: 10.6084/m9.figshare.26593577.v1
title: Additional file 1 of Screening and prioritising persistent, mobile and toxic chemicals: development and application of a robust scoring system

description: Additional file 1. The P,M,T-scores for the EINECS/REACH and RIWA list
DOI: 10.6084/m9.figshare.26566424.v1
title: Additional file 6 of Transcriptome Landscapes of Salt-Susceptible Rice Cultivar IR29 Associated with a Plant Growth Promoting Endophytic Streptomyces

description: Additional file 6: Table S7. Transcription factor (TF) related gene analysis of up- and downregulated DEGs.
DOI: 10.15468/dl.hmcybh
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.140662 -36.753033, 144.140662 -36.757524, 144.145154 -36.757524, 144.145154 -36.75977, 144.149645 -36.75977, 144.149645 -36.762016, 144.156383 -36.762016, 144.156383 -36.75977, 144.151891 -36.75977, 144.151891 -36.755278, 144.142908 -36.755278, 144.142908 -36.753033, 144.140662 -36.753033))"
 ]
}

 The dataset includes 50 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066151-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14278/rodare.8
title: Data set to illustrate advanced process-synchronized computed tomography for the investigation of periodic processes

description: This data set contains raw data and data read-in routines used for the publication:<br>
<strong>"Advanced process-synchronized computed tomography for the investigation of periodic processes"</strong>

Object of investigation: A centrifugal pump that impeller rotates at 1480 rpm and that is operated in gas-liquid two phase flow.<br>
Used CT imaging system: HireCT (high resolution gamma-ray computed tomography) scanner of the HZDR
description: {"references": ["doi:10.1063/1.2795648", "doi:10.1088/0957-0233/18/11/018"]}
DOI: 10.14278/rodare.7
title: Data set to illustrate advanced process-synchronized computed tomography for the investigation of periodic processes

description: This data set contains raw data and data read-in routines used for the publication:<br>
<strong>"Advanced process-synchronized computed tomography for the investigation of periodic processes"</strong>

Object of investigation: A centrifugal pump that impeller rotates at 1480 rpm and that is operated in gas-liquid two phase flow.<br>
Used CT imaging system: HireCT (high resolution gamma-ray computed tomography) scanner of the HZDR
description: {"references": ["doi:10.1063/1.2795648", "doi:10.1088/0957-0233/18/11/018"]}
DOI: 10.6084/m9.figshare.26593598
title: Additional file 3 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 3: Performance of Cell Painting, structural models, soft-voting ensembles, hierarchical models, and the similarity-based merger models over all 177 assays used in this study.
DOI: 10.15468/dl.7cgw3k
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron cinerascens Sleumer"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066152-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26593601
title: Additional file 4 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 4: Hyperparameters considered for optimising Random Forests.
DOI: 10.15468/dl.qrw95v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.542428 -32.380462, 148.542428 -32.384954, 148.544674 -32.384954, 148.544674 -32.380462, 148.542428 -32.380462))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066153-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26566412
title: Additional file 2 of Transcriptome Landscapes of Salt-Susceptible Rice Cultivar IR29 Associated with a Plant Growth Promoting Endophytic Streptomyces

description: Additional file 2: Table S3. List and predicted function of up and downregulated DEGs.
DOI: 10.6084/m9.figshare.26593592.v1
title: Additional file 1 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 1: Assay descriptions of the public dataset comprising 88 assays.
DOI: 10.6084/m9.figshare.26593595.v1
title: Additional file 2 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 2: Assay types and readout types of Broad Institute dataset comprising 89 assays.
DOI: 10.6084/m9.figshare.26593598.v1
title: Additional file 3 of Merging bioactivity predictions from cell morphology and chemical fingerprint models using similarity to training data

description: Additional file 3: Performance of Cell Painting, structural models, soft-voting ensembles, hierarchical models, and the similarity-based merger models over all 177 assays used in this study.
DOI: 10.6084/m9.figshare.26593316.v1
title: Additional file 1 of Bacterial symbiont diversity in Arctic seep Oligobrachia siboglinids

description: Additional file 1. The complete table of ASVs used in this study (.xlx). Full sequences are in the first column. Each ASV is given a sequential number (ASV number) written in the second column. Numbers in the rest of the table represent the number of reads obtained for the sequence in each sample. The last columns are the Silva based classifications of each ASV. Fastq files will be deposited in GenBank.
DOI: 10.6084/m9.figshare.26593316
title: Additional file 1 of Bacterial symbiont diversity in Arctic seep Oligobrachia siboglinids

description: Additional file 1. The complete table of ASVs used in this study (.xlx). Full sequences are in the first column. Each ASV is given a sequential number (ASV number) written in the second column. Numbers in the rest of the table represent the number of reads obtained for the sequence in each sample. The last columns are the Silva based classifications of each ASV. Fastq files will be deposited in GenBank.
DOI: 10.25934/pr00010420
title:  Development of “Vidata” a Standardized AMR Data Analysis and Visualization Tool - DATA CHALLENGE

description: 
Topic: Development of “Vidata” a Standardized AMR Data Analysis and Visualization Tool 
Background:
Antimicrobial resistance (AMR) is an increasing global health concern that poses a big threat to the practice of medicine. It harms the activity of antimicrobial agents, which are pivotal in the treatment of infections caused by microorganisms. The emergence and spread of resistant micro-organisms are driven by numerous factors, including overuse and misuse of antibiotics in both humans and animals, inadequate infection prevention measures, and global travel. 
Currently, there is a lot of AMR data that is being collected worldwide. With the existence of extensive antimicrobial registers such as that of Vivli, that contain patient and microbial data, we identify an opportunity to utilize data in these registers intending to create a visualisation and analysis tool that is standardized and able to accept antimicrobial data irrespective of the source. The tool will be user-friendly with chat capabilities to enable health workers to interact with it efficiently. 

Research Objectives: 
1. To analyse global variations in antimicrobial resistance patterns. 
2. To identify effective antibiotics and those with increasing resistance rates against various microorganisms. 
3. To develop an interactive tool that analyses and visualizes AMR patterns and informs treatment policies. 
Method: 
Data analysis and machine learning techniques will be employed to identify and map the geographical variations in AMR patterns. 
Key steps include: 
1. Data Cleaning and Preparation: Ensuring data quality and consistency.
2. Exploratory Data Analysis (EDA): Gaining insights from the dataset.
3. Machine Learning Models: Training the model to identify resistance patterns and predict effective antibiotics. 
4. Geo-mapping: Visualizing resistance patterns using geographic information systems (GIS). 
5. Dashboard Development: Integrating analysis results into a user-friendly dashboard that displays resistance trends, effective antibiotics, regional resistance hotspots and an AI chat box to facilitate data interaction.
DOI: 10.6084/m9.figshare.26566421.v1
title: Additional file 5 of Transcriptome Landscapes of Salt-Susceptible Rice Cultivar IR29 Associated with a Plant Growth Promoting Endophytic Streptomyces

description: Additional file 5: Table S6. Metabolic pathway analysis of up and downregulated DEGs.