cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7qzd2b
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala dusenii Norlind"
 ]
}

 The dataset includes 70 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090665-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk9haz
title: Occurrence Download

description: A dataset containing 26734 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database of Vascular Plants of Himalaya"
 ]
}

 The dataset includes 26734 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040326-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kstqub
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pilumnus spinifer H.Milne Edwards, 1834"
 ]
}

 The dataset includes 631 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129594-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbv7hm
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Kadua coriacea (Sm.) W.L.Wagner & Lorence"
 ]
}

 The dataset includes 18 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045778-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t97699
title: Occurrence Download

description: A dataset containing 25025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Myiotriccus ornatus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 25025 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077274-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stau4f
title: Occurrence Download

description: A dataset containing 6092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia dumetorum L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6092 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070928-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tke3dv
title: Occurrence Download

description: A dataset containing 5575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Myiothlypis bivittata",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 5575 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077246-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3v9ghn
title: Occurrence Download

description: A dataset containing 1377280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 1377280 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040324-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdmmaj
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.69468 36.84315,-6.91149 36.01115,-6.1443 35.88964,-5.19364 35.795,-4.29301 35.93016,-4.34304 36.68281,-4.89343 37.30887,-5.7607 37.21595,-6.69468 36.84315))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, EN, VU)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 546 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027241-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.444yb5
title: Occurrence Download

description: A dataset containing 235250 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is ABV - Common breeding birds in Flanders, Belgium"
 ]
}

 The dataset includes 235250 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045772-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqeqqw
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Didelphis albiventris Lund, 1840"
 ]
}

 The dataset includes 73 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077212-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ru8jwk
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.67812 36.64741,-6.46172 35.9965,-6.18761 35.76272,-5.35087 35.65729,-4.51412 36.41557,-4.41313 37.29287,-5.13447 37.43047,-6.04334 37.30435,-6.67812 36.64741))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, CR, VU)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 518 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027240-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bqseg
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mali",
 "TaxonKey is Parkia biglobosa (Jacq.) R.Br. ex G.Don"
 ]
}

 The dataset includes 72 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061351-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvh252
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala dolichocarpa S.F.Blake"
 ]
}

 The dataset includes 128 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090650-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqf4np
title: Occurrence Download

description: A dataset containing 2548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-6.80956 39.33589,-8.32456 37.44929,-7.18117 35.57699,-4.70858 35.3626,-2.05018 36.82043,-2.90773 39.37877,-6.80956 39.33589))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (VU, EN, CR)",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2548 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027256-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gx9wr5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Glaucidium sylvaticum",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0090652-230530130749713/datasets/export for details.
DOI: 10.15468/dl.nqgzhm
title: Occurrence Download

description: A dataset containing 50352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adalia bipunctata (Linnaeus, 1758)"
 ]
}

 The dataset includes 50352 records from 384 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040327-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17773454
title: Data for "Half-Quantized Layer Hall Effect as a Probe of Quantized Axion Field"

description: The data file contains the data for the figures in the main text and the Supplementary Information.
DOI: 10.5281/zenodo.17773455
title: Data for "Half-Quantized Layer Hall Effect as a Probe of Quantized Axion Field"

description: The data file contains the data for the figures in the main text and the Supplementary Information.
DOI: 10.15468/dl.mb53px
title: Occurrence Download

description: A dataset containing 7598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhus trilobata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7598 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019693-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8159511
title: Disturbed trophoblast transition links early fetal to maternal syndrome progression in pre-eclampsia

description: Pre-eclampsia (PE) is a syndrome that affects multiple organ systems and is the most severe hypertensive disorder in pregnancy. It frequently leads to preterm delivery, maternal and fetal morbidity and mortality, and life-long complications (1). We currently lack efficient screening tools (2,3) and early therapies (4,5) to address PE. To study the initial stages of early onset PE and identify candidate markers and pathways, we performed spatio-temporal multi-omics profiling of human PE placentae and healthy controls and validated targets in early gestation in a longitudinal clinical cohort. We used a single-nuclei RNA-seq approach, spatial proteo-, and transcriptomics, and mechanistic in vitro signaling analyses.


This repository contains the single nuclei processed data for decidua and placenta, and Visium (10x spatial transcriptomics) data used in the study. It contains the anndata objects (H5AD) for snRNA-seq with required metadata and NMF-based spot deconvolution data for visium (RDS). The raw Cellranger feature-barcode matrices (H5 files) per donor sample are also included. 


References


1 Williams, D. Long-term complications of preeclampsia. Semin Nephrol 31, 111-122,
doi:10.1016/j.semnephrol.2010.10.010 (2011).



2 Brown, M. A. et al. Hypertensive Disorders of Pregnancy: ISSHP Classification,
Diagnosis, and Management Recommendations for International Practice.
Hypertension 72, 24-43, doi:10.1161/HYPERTENSIONAHA.117.10803 (2018).



3 Zeisler, H. et al. Predictive Value of the sFlt-1:PlGF Ratio in Women with Suspected
Preeclampsia. N Engl J Med 374, 13-22, doi:10.1056/NEJMoa1414838 (2016).



4 Hauth, J. C. et al. Pregnancy outcomes in healthy nulliparas who developed
hypertension. Calcium for Preeclampsia Prevention Study Group. Obstet Gynecol 95,
24-28, doi:10.1016/s0029-7844(99)00462-7 (2000).



5 Phipps, E. A., Thadhani, R., Benzing, T. & Karumanchi, S. A. Pre-eclampsia:
pathogenesis, novel diagnostics and therapies. Nat Rev Nephrol 15, 275-289,
doi:10.1038/s41581-019-0119-6 (2019).
DOI: 10.5281/zenodo.5336503
title: Disturbed trophoblast transition links early fetal to maternal syndrome progression in pre-eclampsia

description: Pre-eclampsia (PE) is a syndrome that affects multiple organ systems and is the most severe hypertensive disorder in pregnancy. It frequently leads to preterm delivery, maternal and fetal morbidity and mortality, and life-long complications (1). We currently lack efficient screening tools (2,3) and early therapies (4,5) to address PE. To study the initial stages of early onset PE and identify candidate markers and pathways, we performed spatio-temporal multi-omics profiling of human PE placentae and healthy controls and validated targets in early gestation in a longitudinal clinical cohort. We used a single-nuclei RNA-seq approach, spatial proteo-, and transcriptomics, and mechanistic in vitro signaling analyses.


This repository contains the single nuclei processed data for decidua and placenta, and Visium (10x spatial transcriptomics) data used in the study. It contains the anndata objects (H5AD) for snRNA-seq with required metadata and NMF-based spot deconvolution data for visium (RDS). The raw Cellranger feature-barcode matrices (H5 files) per donor sample are also included. 


References


1 Williams, D. Long-term complications of preeclampsia. Semin Nephrol 31, 111-122,
doi:10.1016/j.semnephrol.2010.10.010 (2011).



2 Brown, M. A. et al. Hypertensive Disorders of Pregnancy: ISSHP Classification,
Diagnosis, and Management Recommendations for International Practice.
Hypertension 72, 24-43, doi:10.1161/HYPERTENSIONAHA.117.10803 (2018).



3 Zeisler, H. et al. Predictive Value of the sFlt-1:PlGF Ratio in Women with Suspected
Preeclampsia. N Engl J Med 374, 13-22, doi:10.1056/NEJMoa1414838 (2016).



4 Hauth, J. C. et al. Pregnancy outcomes in healthy nulliparas who developed
hypertension. Calcium for Preeclampsia Prevention Study Group. Obstet Gynecol 95,
24-28, doi:10.1016/s0029-7844(99)00462-7 (2000).



5 Phipps, E. A., Thadhani, R., Benzing, T. & Karumanchi, S. A. Pre-eclampsia:
pathogenesis, novel diagnostics and therapies. Nat Rev Nephrol 15, 275-289,
doi:10.1038/s41581-019-0119-6 (2019).
DOI: 10.15468/dl.4dqbpn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucochloridium holostomum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019694-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rejqyw
title: Occurrence Download

description: A dataset containing 16943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes cereum",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16943 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019695-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jw4ek
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclina lunulata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019697-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmk7pb
title: Occurrence Download

description: A dataset containing 1045 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Roepera morgsana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1045 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019699-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3ghdf
title: Occurrence Download

description: A dataset containing 641 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Bolitoglossa mexicana"
 ]
}

 The dataset includes 641 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019698-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30192787
title: Male compound manuscript

description: Raw data for lifespan and mating success experiments and hermaphrodite/male LS comparisons dataset.
DOI: 10.6084/m9.figshare.30192787.v3
title: Male compound manuscript

description: Raw data for lifespan and mating success experiments and hermaphrodite/male LS comparisons dataset.
DOI: 10.6084/m9.figshare.30192787.v2
title: Male compound manuscript

description: Raw data for lifespan and mating success experiments and hermaphrodite/male LS comparisons dataset.
DOI: 10.15468/dl.sbv5nu
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anadara vanderhoofi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019700-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86e25d
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-62.74639 8.31963,-62.68652 8.31963,-62.68652 8.35348,-62.74639 8.35348,-62.74639 8.31963))",
 "TaxonKey is Passeriformes",
 "Year 2002-2024"
 ]
}

 The dataset includes 124 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019701-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjz48j
title: Occurrence Download

description: A dataset containing 20571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa acicularis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20571 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019702-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmpgza
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paramysis agigensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019703-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240801
title: HIFLD OPEN Built Up Areas Point (USACE IENC)

description: The USACE IENCs coverage area consists of 7,260 miles across 21 rivers primarily located in the Central United States. IENCs apply to inland waterways that are maintained for navigation by USACE for shallow-draft vessels (e.g., maintained at a depth of 9-14 feet, dependent upon the waterway project authorization). Generally, IENCs are produced for those commercially navigable waterways which the National Oceanic and Atmospheric Administration (NOAA) does not produce Electronic Navigational Charts (ENCs). However, Special Purpose IENCs may be produced in agreement with NOAA. Built-up area Definition: An area containing a concentration of buildings and the supporting road or rail infrastructure. Distinction: building, single; road; square
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025. (Downloaded 08/26)
DOI: 10.3886/e240801v1
title: HIFLD OPEN Built Up Areas Point (USACE IENC)

description: The USACE IENCs coverage area consists of 7,260 miles across 21 rivers primarily located in the Central United States. IENCs apply to inland waterways that are maintained for navigation by USACE for shallow-draft vessels (e.g., maintained at a depth of 9-14 feet, dependent upon the waterway project authorization). Generally, IENCs are produced for those commercially navigable waterways which the National Oceanic and Atmospheric Administration (NOAA) does not produce Electronic Navigational Charts (ENCs). However, Special Purpose IENCs may be produced in agreement with NOAA. Built-up area Definition: An area containing a concentration of buildings and the supporting road or rail infrastructure. Distinction: building, single; road; square
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025. (Downloaded 08/26)
DOI: 10.15468/dl.mfkpu6
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tenellia fuscostriata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019705-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240804
title: HIFLD OPEN Submarine Cable Lines (USACE IENC)

description: Cable, submarine Definition: An assembly of wires or fibres, or a wire rope or chain which has been laid underwater or buried beneath the seabed (Hydrographic Service, Royal Australian Navy)
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025. (Downloaded 08/26)
DOI: 10.3886/e240804v1
title: HIFLD OPEN Submarine Cable Lines (USACE IENC)

description: Cable, submarine Definition: An assembly of wires or fibres, or a wire rope or chain which has been laid underwater or buried beneath the seabed (Hydrographic Service, Royal Australian Navy)
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025. (Downloaded 08/26)
DOI: 10.15468/dl.w94ccz
title: Occurrence Download

description: A dataset containing 3681005823 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 3681005823 records from 87544 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019468-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.