cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5996516
title: The stress response gene ATF3 is a direct target of the Wnt/β-catenin pathway and inhibits the invasion and migration of HCT116 human colorectal cancer cells

description: This is PCR data for The stress response gene ATF3 is a direct target of the Wnt/β-catenin pathway and inhibits the invasion and migration of HCT116 human colorectal cancer cells.
DOI: 10.6084/m9.figshare.5996516.v1
title: The stress response gene ATF3 is a direct target of the Wnt/β-catenin pathway and inhibits the invasion and migration of HCT116 human colorectal cancer cells

description: This is PCR data for The stress response gene ATF3 is a direct target of the Wnt/β-catenin pathway and inhibits the invasion and migration of HCT116 human colorectal cancer cells.
DOI: 10.6084/m9.figshare.5996513
title: gamma=3

description: gamma=3
DOI: 10.6084/m9.figshare.5996513.v1
title: gamma=3

description: gamma=3
DOI: 10.6084/m9.figshare.5996510.v1
title: Karnes_2018_ACS_New_ Orleans

description: Talk from 2018 ACS Spring Meeting<br>
DOI: 10.6084/m9.figshare.5996507
title: collision with gamma=5/3

description: collision with gamma=5/3
DOI: 10.6084/m9.figshare.5996507.v1
title: collision with gamma=5/3

description: collision with gamma=5/3
DOI: 10.6084/m9.figshare.5996495
title: Theoretical ribosomal protein mass fingerprint of Ustilago maydis

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Ustilago maydis.</i><br><br>
DOI: 10.6084/m9.figshare.5996495.v1
title: Theoretical ribosomal protein mass fingerprint of Ustilago maydis

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Ustilago maydis.</i><br><br>
DOI: 10.6084/m9.figshare.5996492
title: Theoretical ribosomal protein mass fingerprint of Populus trichocarpa

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Populus trichocarpa.</i><br><br>
DOI: 10.6084/m9.figshare.5996492.v1
title: Theoretical ribosomal protein mass fingerprint of Populus trichocarpa

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Populus trichocarpa.</i><br><br>
DOI: 10.6084/m9.figshare.5996477
title: Data for "Wildfire smoke cools summer river and stream water temperatures"

description: These data were used in an analysis of the effects of wildfire smoke on river and stream water temperatures, air temperatures, and solar radiation in the lower Klamath River Basin, California, USA. These data were assembled and analyzed by Aaron T. David, J. Eli Asarian, and Frank K. Lake. The publication describing these data and the results and interpretation of our analysis is titled: "Wildfire smoke cools summer river and stream water temperatures." For questions about these data or the publication, please contact Aaron David (aarontdavid@yahoo.com).
DOI: 10.6084/m9.figshare.5996477.v1
title: Data for "Wildfire smoke cools summer river water temperatures, potentially benefiting cold-water adapted species"

description: These data were used in an analysis of the effects of wildfire smoke on stream and river water temperatures, air temperatures, and solar radiation in the lower Klamath River Basin, California, USA. These data were assembled and analyzed by Aaron T. David, J. Eli Asarian, and Frank K. Lake. The publication describing these data and the results and interpretation of our analysis is titled: "Wildfire smoke cools summer river water temperatures, potentially benefiting cold-water adapted species." For questions about these data or the publication, please contact Aaron David (aarontdavid@yahoo.com).
DOI: 10.6084/m9.figshare.5996477.v3
title: Data for "Wildfire smoke cools summer river and stream water temperatures"

description: These data were used in an analysis of the effects of wildfire smoke on river and stream water temperatures, air temperatures, and solar radiation in the lower Klamath River Basin, California, USA. These data were assembled and analyzed by Aaron T. David, J. Eli Asarian, and Frank K. Lake. The publication describing these data and the results and interpretation of our analysis is titled: "Wildfire smoke cools summer river and stream water temperatures." For questions about these data or the publication, please contact Aaron David (aarontdavid@yahoo.com).
DOI: 10.6084/m9.figshare.5996477.v2
title: Data for "Wildfire smoke cools summer river and stream water temperatures"

description: These data were used in an analysis of the effects of wildfire smoke on river and stream water temperatures, air temperatures, and solar radiation in the lower Klamath River Basin, California, USA. These data were assembled and analyzed by Aaron T. David, J. Eli Asarian, and Frank K. Lake. The publication describing these data and the results and interpretation of our analysis is titled: "Wildfire smoke cools summer river and stream water temperatures." For questions about these data or the publication, please contact Aaron David (aarontdavid@yahoo.com).
DOI: 10.6084/m9.figshare.5996399
title: Cambridge Analytica

description: Quarterly payments to Cambridge Analytica during 2016 election, organized by committee. Source: Federal Election Commission
DOI: 10.6084/m9.figshare.5996282
title: An Empirical Investigation on the Readability of Manual and Generated Test Cases

description: Software testing is one of the most crucial tasks in the typical development process. Developers are usually required to write unit test cases for the code they implement. Since this is a time-consuming task, in last years many approaches and tools for automatic test case generation — such as EvoSuite — have been introduced. Nevertheless, developers have to maintain and evolve tests to sustain the changes in the source code; therefore, having readable test cases is important to ease such a process.However, it is still not clear whether developers make an effort in writing readable unit tests. Therefore, in this paper, we conduct an explorative study comparing the readability of manually written test cases with the classes they test. Moreover, we deepen such analysis looking at the readability of automatically generated test cases. Our results suggest that developers tend to neglect the readability of test cases and that automatically generated test cases are generally even less readable than manually written ones.
DOI: 10.6084/m9.figshare.5995876
title: Additional file 3: of ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

description: Table S3. The list of the 2000 SRA RNA-seq samples used in the analysis. SRA samples were randomly selected from the Sequence Read Archive (SRA). (CSV 22 kb)
DOI: 10.6084/m9.figshare.5995876.v1
title: Additional file 3: of ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

description: Table S3. The list of the 2000 SRA RNA-seq samples used in the analysis. SRA samples were randomly selected from the Sequence Read Archive (SRA). (CSV 22 kb)
DOI: 10.6084/m9.figshare.5995852
title: MOESM2 of Low risk of recurrence following artesunateâ Sulphadoxineâ pyrimethamine plus primaquine for uncomplicated Plasmodium falciparum and Plasmodium vivax infections in the Republic of the Sudan

description: Additional file 2. Database.
DOI: 10.6084/m9.figshare.5995852.v1
title: MOESM2 of Low risk of recurrence following artesunateâ Sulphadoxineâ pyrimethamine plus primaquine for uncomplicated Plasmodium falciparum and Plasmodium vivax infections in the Republic of the Sudan

description: Additional file 2. Database.
DOI: 10.6084/m9.figshare.5995696
title: Additional file 1: of Mycobacterium tuberculosis thymidylate kinase antigen assays for designating incipient, high-risk latent M.tb infection

description: This file shows processing of the duplicate EIA readings for TMKmt Ag capture among the 46 HIV+ve LTBI and 36 HIV-ve LTBI relative to the 9 NTB controls and 2 rTMKmt positive controls. Overall, readings of blanks were subtracted from the average ODs of the test wells to obtain a corrected average ODs used to draw the graphs. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5995696.v1
title: Additional file 1: of Mycobacterium tuberculosis thymidylate kinase antigen assays for designating incipient, high-risk latent M.tb infection

description: This file shows processing of the duplicate EIA readings for TMKmt Ag capture among the 46 HIV+ve LTBI and 36 HIV-ve LTBI relative to the 9 NTB controls and 2 rTMKmt positive controls. Overall, readings of blanks were subtracted from the average ODs of the test wells to obtain a corrected average ODs used to draw the graphs. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.5995660
title: Additional file 2 of Chemical and behavioral integration of army ant-associated rove beetles – a comparison between specialists and generalists

description: Table S2. Specimen and collection information including GenBank accession numbers (downloadable on the journal’s webpage; not included here). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.5995660.v2
title: Additional file 2 of Chemical and behavioral integration of army ant-associated rove beetles – a comparison between specialists and generalists

description: Table S2. Specimen and collection information including GenBank accession numbers (downloadable on the journal’s webpage; not included here). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.5995660.v1
title: Additional file 2: of Chemical and behavioral integration of army ant-associated rove beetles – a comparison between specialists and generalists

description: Table S2. Specimen and collection information including GenBank accession numbers (downloadable on the journal’s webpage; not included here). (XLSX 36 kb)
DOI: 10.6084/m9.figshare.5995636
title: Additional file 1 of Chemical and behavioral integration of army ant-associated rove beetles – a comparison between specialists and generalists

description: Table S1. Colony collection data (downloadable on the journal’s webpage; not included here). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5995636.v1
title: Additional file 1: of Chemical and behavioral integration of army ant-associated rove beetles – a comparison between specialists and generalists

description: Table S1. Colony collection data (downloadable on the journal’s webpage; not included here). (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5995597
title: MOESM2 of Birds of the Kangchenjunga Landscape, the Eastern Himalaya: status, threats and implications for conservation

description: Additional file 2. Bird database.
DOI: 10.6084/m9.figshare.5995597.v1
title: MOESM2 of Birds of the Kangchenjunga Landscape, the Eastern Himalaya: status, threats and implications for conservation

description: Additional file 2. Bird database.
DOI: 10.6084/m9.figshare.5995555
title: Mitochondrial dysfunction in Megalobrama amblycephala

description: Unigene analysis of high-fat-high-carbohydrate diet-induced transcriptome in Megalobrama amblycephala <br>
DOI: 10.6084/m9.figshare.5995555.v1
title: Mitochondrial dysfunction in Megalobrama amblycephala

description: Unigene analysis of high-fat-high-carbohydrate diet-induced transcriptome in Megalobrama amblycephala <br>
DOI: 10.6084/m9.figshare.5995546
title: Program -- Inverse Scattering by Firefly Algorithm

description: C++ program source code for submission paper --- Inverse Scattering by Firefly Algorithm
DOI: 10.6084/m9.figshare.5995546.v1
title: Program -- Inverse Scattering by Firefly Algorithm

description: C++ program source code for submission paper --- Inverse Scattering by Firefly Algorithm
DOI: 10.6084/m9.figshare.5995519
title: A Parallel Corpus of Thesis and Dissertations Abstracts

description: NOTE FOR WMT PARTICIPANTS:There is an easier version for MT available in Moses format (one sentence per line. The files start with moses_like.<br>If you use this dataset, please cite the following work:<pre>@inproceedings{soares2018parallel, title={A Parallel Corpus of Theses and Dissertations Abstracts}, author={Soares, Felipe and Yamashita, Gabrielli Harumi and Anzanello, Michel Jose}, booktitle={International Conference on Computational Processing of the Portuguese Language}, pages={345--352}, year={2018}, organization={Springer} }</pre><pre><br></pre><br>In Brazil, the governmental body responsible for overseeing and coordinating post-graduate pro-grams, CAPES, keeps records of all thesis and dissertations presented in the country. Informa-tion regarding such documents can be accessed online in the Thesis and Dissertations Catalog(TDC), which contains abstracts in Portuguese and English, and additional data regarding suchdocuments. Thus, this database can be a potential source of parallel corpora for the Portugueseand English languages. In this article, we present the development of a parallel corpus from TDC,which is made available by CAPES under the open data initiative. Approximately 240,000 doc-uments were collected and aligned using the Hunalign algorithm. We demontrate the capabilityof our developed corpus by training Statistical Machine Translation (SMT) and Neural MachineTranslation (NMT) models for both language directions, followed by a comparison with GoogleTranslator (GT). Our both translation models presented better BLEU scores than GT, with NMTsystem being the most accurate one. Sentence alignment was also manually evaluated, presentingan average of XX% correctly aligned sentences. Our parallel corpus is freely available in TMXformat, with complementary infomration regarding document metadata.
DOI: 10.6084/m9.figshare.5995519.v1
title: A Parallel Corpus of Thesis and Dissertations Abstracts

description: In Brazil, the governmental body responsible for overseeing and coordinating post-graduate pro-grams, CAPES, keeps records of all thesis and dissertations presented in the country. Informa-tion regarding such documents can be accessed online in the Thesis and Dissertations Catalog(TDC), which contains abstracts in Portuguese and English, and additional data regarding suchdocuments. Thus, this database can be a potential source of parallel corpora for the Portugueseand English languages. In this article, we present the development of a parallel corpus from TDC,which is made available by CAPES under the open data initiative. Approximately 240,000 doc-uments were collected and aligned using the Hunalign algorithm. We demontrate the capabilityof our developed corpus by training Statistical Machine Translation (SMT) and Neural MachineTranslation (NMT) models for both language directions, followed by a comparison with GoogleTranslator (GT). Our both translation models presented better BLEU scores than GT, with NMTsystem being the most accurate one. Sentence alignment was also manually evaluated, presentingan average of XX% correctly aligned sentences. Our parallel corpus is freely available in TMXformat, with complementary infomration regarding document metadata.
DOI: 10.6084/m9.figshare.5995507
title: Theoretical ribosomal protein mass fingerprint of Chlamydomonas reinhardtii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Chlamydomonas reinhardtii.</i><br><br>
DOI: 10.6084/m9.figshare.5995507.v1
title: Theoretical ribosomal protein mass fingerprint of Chlamydomonas reinhardtii

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Chlamydomonas reinhardtii.</i><br><br>
DOI: 10.6084/m9.figshare.5995504
title: Theoretical ribosomal protein mass fingerprint of Volvox carteri

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Volvox carteri</i>.<br><br>
DOI: 10.6084/m9.figshare.5995468
title: MC-dataset-multiclass

description: Multiclass and labeled dataset containing 3290 samples of cleanwares and 16450 of malwares. Five classes of malware (backdoor, rootkit, trojan, virus and worm) with 3290 samples of each class were labeled using antivirus scans from VirusTotal. It was considered for the classification of each sample of malware, the most present class returned by the antivirus scans. Files with a maximum size of approximately 3.2 MB. All files were named with their md5 hashes, hiding their original names. The cleanwares were extracted from several different versions of Windows systems and the malwares obtained from the VirusShare repository.
DOI: 10.6084/m9.figshare.5995504.v1
title: Theoretical ribosomal protein mass fingerprint of Volvox carteri

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Volvox carteri</i>.<br><br>
DOI: 10.6084/m9.figshare.5995453
title: Malta Temple Sheltering _ Unpublished reports _ Biological and Environmental surveys

description: These are reports on the monitoring of biological growth and environmental monitoring of the situation prior to the sheltering of the Megalithic Prehistoric Temples of Malta, utilised to support the decision to shelter the sites.
DOI: 10.6084/m9.figshare.5995453.v1
title: Malta Temple Sheltering _ Unpublished reports _ Biological and Environmental surveys

description: These are reports on the monitoring of biological growth and environmental monitoring of the situation prior to the sheltering of the Megalithic Prehistoric Temples of Malta, utilised to support the decision to shelter the sites.
DOI: 10.6084/m9.figshare.5995447
title: Revisiting "Programmers' Build Errors" in the Visual Studio Context - Replication Package

description: The replication package for: Revisiting "Programmers’ Build Errors" in the Visual Studio Context<br>Authors: N. Rabbani, M. Harvey, S. Saquif, K. Gallaba, S. McIntosh.Published At: In MSR’18: 15th International Conference on Mining Software Repositories , May 28–29, 2018, Gothenburg, Sweden.
DOI: 10.6084/m9.figshare.5995447.v1
title: Revisiting "Programmers' Build Errors" in the Visual Studio Context - Replication Package

description: The replication package for: Revisiting "Programmers’ Build Errors" in the Visual Studio Context<br>Authors: N. Rabbani, M. Harvey, S. Saquif, K. Gallaba, S. McIntosh.Published At: In MSR’18: 15th International Conference on Mining Software Repositories , May 28–29, 2018, Gothenburg, Sweden.
DOI: 10.6084/m9.figshare.5995408
title: MC-dataset-binary

description: Binary and labeled dataset containing 11480 samples of cleanwares and malwares with 5740 samples of each class. Files with a maximum size of approximately 3.2 MB. All files were named with their md5 hashes, hiding their original names. The cleanwares were extracted from several different versions of Windows systems and the malwares obtained from the VirusShare repository.
DOI: 10.6084/m9.figshare.5995381
title: Enhancer information and related codes for a new gene-based analysis

description: It remains challenging to boost statistical power of GWAS to identify more risk variants or loci that can account for “missing heritability”. Furthermore, since most identified variants are not in gene coding regions, a biological interpretation of their function largely lacks. On the other hand, recent biotechnological advances have made it feasible to experimentally measure the three-dimensional organization of the genome, including enhancer-promoter interactions in high resolutions. Due to the well known critical roles of enhancer-promoter interactions in regulating gene expression programs, such data have been applied to link GWAS risk variants to their putative target genes, gaining insights into underlying biological mechanisms.However, their direct use in GWAS association testing is yet to be exploited.<br>Here we propose integrating enhancer-promoter interactions into GWAS association analysis to both boost statistical power and enhance interpretability. We demonstrate that, through an application to two large schizophrenia (SCZ) GWAS summary datasets, the proposed method could identify some novel SCZ-associated genes and pathways (containing no significant SNPs).<br>To help other researchers reuse enhancer information and conduct follow-up or applied research, we provide the following information:<br>1. MCF7_allenhancer.rds: Enhancer information for each gene based on MCF7 data (Li et al., 2012);2. Hippo_allenhancer.rds: Enhancer information for each gene based on a computationally predicted method with the brain hippocampus region (Cao et al., 2017);3. CP_allenhancer.rds: Enhancer information based on the cortical and subcortical plate (Won et al., 2016);4. GZ_allenhancer.rds: Enhancer information based on the germinal zone (Won et al., 2016);5. Enhancer_only.R: Source codes for enhancer only-based method. You may change the directory and prepare the necessary file to run it successfully;6. Enhancer_plus_gene_body.R: Source codes for enhancer plus gene body-based method.<br>
DOI: 10.6084/m9.figshare.5995381.v1
title: Enhancer information and related codes for a new gene-based analysis

description: It remains challenging to boost statistical power of GWAS to identify more risk variants or loci that can account for “missing heritability”. Furthermore, since most identified variants are not in gene coding regions, a biological interpretation of their function largely lacks. On the other hand, recent biotechnological advances have made it feasible to experimentally measure the three-dimensional organization of the genome, including enhancer-promoter interactions in high resolutions. Due to the well known critical roles of enhancer-promoter interactions in regulating gene expression programs, such data have been applied to link GWAS risk variants to their putative target genes, gaining insights into underlying biological mechanisms.However, their direct use in GWAS association testing is yet to be exploited.<br>Here we propose integrating enhancer-promoter interactions into GWAS association analysis to both boost statistical power and enhance interpretability. We demonstrate that, through an application to two large schizophrenia (SCZ) GWAS summary datasets, the proposed method could identify some novel SCZ-associated genes and pathways (containing no significant SNPs).<br>To help other researchers reuse enhancer information and conduct follow-up or applied research, we provide the following information:<br>1. MCF7_allenhancer.rds: Enhancer information for each gene based on MCF7 data (Li et al., 2012);2. Hippo_allenhancer.rds: Enhancer information for each gene based on a computationally predicted method with the brain hippocampus region (Cao et al., 2017);3. CP_allenhancer.rds: Enhancer information based on the cortical and subcortical plate (Won et al., 2016);4. GZ_allenhancer.rds: Enhancer information based on the germinal zone (Won et al., 2016);5. Enhancer_only.R: Source codes for enhancer only-based method. You may change the directory and prepare the necessary file to run it successfully;6. Enhancer_plus_gene_body.R: Source codes for enhancer plus gene body-based method.<br>
DOI: 10.6084/m9.figshare.5995177
title: Raw data

description: Raw data of the project
DOI: 10.6084/m9.figshare.5995165
title: Functional phenomics pipeline

description: The functional phenomics pipeline shows how knowledge about plant physiology can be inferred from phenotyping studies.
DOI: 10.6084/m9.figshare.5995165.v1
title: Functional phenomics pipeline

description: The functional phenomics pipeline shows how knowledge about plant physiology can be inferred from phenotyping studies.
DOI: 10.6084/m9.figshare.5993572
title: Boundary Layer Generation

description: Stable and convective BL generation in the EnFlo wind tunnel