cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4728792
title: MedleyDB Pitch Tracking Subset estimated notes - pyin

description: Estimated notes for a subset of the MedleyDB dataset (pitch tracking subset) [1], created using the pyin vamp plugin [2]. [1] Bittner, Rachel M., et al. "<strong>Medleydb: A multitrack dataset for annotation-intensive mir research</strong>." <em>ISMIR</em>. Vol. 14. 2014. [2] Mauch, Matthias, and Simon Dixon. "<strong>pYIN: A fundamental frequency estimator using probabilistic threshold distributions</strong>." <em>2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)</em>. IEEE, 2014.
DOI: 10.5281/zenodo.4723709
title: Supporting data for manuscript "A low-cost post-processing technique improves weather forecasts around the world" (2021) by T. D. Hewson and F. M. Pillosu

description: Data relating to manuscript: "A low-cost post-processing technique improves weather forecasts around the world" by T. D. Hewson and F. M. Pillosu, prepared for Communications Earth and Environment (2021). DOI is cited in the paper's data availability statement. List below references the manuscript's content (e.g. Figure numbers). Repository Contents: SouthWalesCaseMay2020.tar (ref: Fig 1c) Image showing sequence of 12h rainfall<sup>1</sup> forecasts for 06-18UTC 9th May 2020 (see annotation on Figure) VerificationFigure.tar (ref: Fig. 2) ROC curve data points and ROC area calculation Additional Verification Scores (e.g. different domains) CreteCaseFeb2019.tar (ref: Fig. 3) Grib files for ECMWF raw ensemble rainfall<sup>1</sup> forecasts, rainfall values, 12-hour accumulations, valid time 12-24UTC 25 Feb 2019 (RawEnsTP_[Acc]_[BaseDate]_[BaseTime]_[EndStep].grib) Grib files for ecPoint-Rainfall<sup>1</sup> forecasts, percentiles, 12-hour accumulations, valid time 12-24UTC 25 Feb 2019 (Pt_BC_PERC_[Acc]_[BaseDate]_[BaseTime]_[EndStep].grib) Crete rainfall observations, 24-hour accumulations, 00-24UTC, for Feb 2019, obtained from Hellenic National Met Service web site (ASCII)* Quality controlled composited version of *, for 25 Feb 2019 (Excel) NorwayCaseJan2018.tar (Fig. 4) Grib file for ECMWF raw ensemble rainfall<sup>1</sup> forecasts, rainfall values, 12-hour accumulations, valid time 06-18UTC 25 Jan 2018 (RawEnsTP_[Acc]_[BaseDate]_[BaseTime]_[EndStep].grib) Grib file for ecPoint-Rainfall<sup>1</sup> forecasts, percentiles, 12-hour accumulations, valid time 06-18UTC 25 Jan 2018 (Pt_BC_PERC_[Acc]_[BaseDate]_[BaseTime]_[EndStep].grib) Norway station location list from Norwegian Met Service (ASCII) 12h rainfall observations for 24th - 28th Jan 2018 from Norwegian Met Service (ASCII) Plot of radar-derived totals and rainfall observations for southwest Norway, for 06-18UTC 25 Jan 2018 (png) USACaseJul2020.tar (Fig. 7) "Gridbox weather types" diagnosed from ECMWF ensemble forecasts from 30th July 2020, valid for 12-24 UTC 30th July 2020 (WT_[Acc]_[BaseDate]_[BaseTime]_[EndStep].grib) <sup>1</sup> "Rainfall" means total precipitation (all phases).
DOI: 10.25921/heag-bq69
title: EM2040 Water Column Sonar Data Collected During NF1901
DOI: 10.25921/vxda-5d47
title: EK60 Water Column Sonar Data Collected During NF1901
DOI: 10.6084/m9.figshare.12909488
title: Maternal GC experiment - behavior and HPA axis dynamics

description: These data were collected as part of the Kluane Red Squirrel Project in collaboration with Dr. Ben Dantzer. All work was conducted under animal ethics approvals from the University of Michigan (PRO00005866).
DOI: 10.6084/m9.figshare.12909488.v1
title: Maternal GC experiment - behavior and HPA axis dynamics

description: These data were collected as part of the Kluane Red Squirrel Project in collaboration with Dr. Ben Dantzer. All work was conducted under animal ethics approvals from the University of Michigan (PRO00005866).
DOI: 10.6073/pasta/b7dbaf90968efbb88345f613b7bbd904
title: Daily summarized seasonal measurements of discharge, water temperature, and specific conductivity from Crescent Stream at F8, McMurdo Dry Valleys, Antarctica (1990-2020, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the glacial meltwater streams in that region. This package contains daily summaries derived from 15-minute measurements of water quality and quantity parameters measured with automatic recording devices on streams in this region. Specifically, this metadata record describes the daily hydrological summaries for the McMurdo Dry Valley's Crescent Stream at F8, located in the Fryxell Basin of Taylor Valley. Measurements commenced during the 1990-91 austral summer and are ongoing. This dataset extends through the first half of the 2019-20 austral summer.
DOI: 10.6073/pasta/5cc0d2606b15ff2f1a7f51b7525ea1c1
title: Daily summarized seasonal measurements of discharge, water temperature, and specific conductivity from Delta Stream at F10, McMurdo Dry Valleys, Antarctica (1990-2020, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the glacial meltwater streams in that region. This package contains daily summaries derived from 15-minute measurements of water quality and quantity parameters measured with automatic recording devices on streams in this region. Specifically, this metadata record describes the daily hydrological summaries for the McMurdo Dry Valley's Delta Stream at F10, located in the Fryxell Basin of Taylor Valley. Measurements commenced during the 1990-91 austral summer and are ongoing. This dataset extends through the first half of the 2019-20 field season.
DOI: 10.6073/pasta/6bc2aec7095ee57d2b4e220ac14e2386
title: Daily summarized seasonal measurements of discharge, water temperature, and specific conductivity from Harnish Creek Tributary (Relict Channel) at F11, McMurdo Dry Valleys, Antarctica (1996-2020, ongoing)

description: As part of the Long Term Ecological Research (LTER) project in the McMurdo Dry Valleys of Antarctica, a systematic sampling program has been undertaken to monitor the glacial meltwater streams in that region. This package contains daily summaries derived from 15-minute measurements of water quality and quantity parameters measured with automatic recording devices on streams in this region. Specifically, this metadata record describes the daily hydrological summaries for the McMurdo Dry Valley's Harnish Creek Tributary (Relict Channel) at F11, located in the Fryxell Basin of Taylor Valley. Measurements commenced during the 1996-97 austral summer and are ongoing. This dataset extends through the first half of the 2019-20 field season.
DOI: 10.5281/zenodo.4728946
title: Mini-review of the use of behavior change theories in clinical trials assessing behavioral interventions for smoking cessation.

description: Dataset of a mini-review assessing the use of behavior change theories in clinical trials assessing behavioral interventions for smoking cessation in healthy adults.
DOI: 10.5281/zenodo.4728945
title: Mini-review of the use of behavior change theories in clinical trials assessing behavioral interventions for smoking cessation.

description: Dataset of a mini-review assessing the use of behavior change theories in clinical trials assessing behavioral interventions for smoking cessation in healthy adults.
DOI: 10.6084/m9.figshare.14515413.v1
title: interactExample4.inter.bb

description: interact file
DOI: 10.6084/m9.figshare.14515413
title: interactExample4.inter.bb

description: interact file
DOI: 10.6084/m9.figshare.14515425
title: Supplementary material

description: GCL/Genome SizeCharachter matrix
DOI: 10.6084/m9.figshare.14515425.v1
title: Supplementary material

description: GCL/Genome SizeCharachter matrix
DOI: 10.6084/m9.figshare.14515430.v1
title: Unclear if future physicians are learning about patient-centred care: Content analysis of curriculum at 16 medical schools

description: Given barriers of patient-centred care (PCC) among physicians and trainees, this study assessed how medical schools addressed PCC in curriculum. The authors used content analysis to describe PCC in publicly-available curriculum documents of Canadian medical schools guided by McCormack’s PCC Framework, and reported results using summary statistics and text examples. The authors retrieved 1459 documents from 16 medical schools (median 49.5, range 16–301). Few mentioned PCC (301, 21.2%), and even fewer thoroughly or accurately described PCC. Significantly more clerkship versus pre-clerkship (24.0% vs 12.6%, <i>p</i> p Overall, few documents mentioned or described PCC or related concepts. This varied by school, and was more frequent in clerkship and elective courses, suggesting that student exposure may be brief and variable. Thus, it remains unclear if medical students are fully exposed to what PCC means and how to implement it. Future research is needed to confirm if PCC content in medical curriculum is lacking.
DOI: 10.6084/m9.figshare.14515430
title: Unclear if future physicians are learning about patient-centred care: Content analysis of curriculum at 16 medical schools

description: Given barriers of patient-centred care (PCC) among physicians and trainees, this study assessed how medical schools addressed PCC in curriculum. The authors used content analysis to describe PCC in publicly-available curriculum documents of Canadian medical schools guided by McCormack’s PCC Framework, and reported results using summary statistics and text examples. The authors retrieved 1459 documents from 16 medical schools (median 49.5, range 16–301). Few mentioned PCC (301, 21.2%), and even fewer thoroughly or accurately described PCC. Significantly more clerkship versus pre-clerkship (24.0% vs 12.6%, <i>p</i> p Overall, few documents mentioned or described PCC or related concepts. This varied by school, and was more frequent in clerkship and elective courses, suggesting that student exposure may be brief and variable. Thus, it remains unclear if medical students are fully exposed to what PCC means and how to implement it. Future research is needed to confirm if PCC content in medical curriculum is lacking.
DOI: 10.5517/ccdc.csd.cc27730m
title: CCDC 2062399: Experimental Crystal Structure Determination

description: Related Article: Denise E. Sunagawa, Naoyoshi Ishida, Hiroaki Iwamoto, Masato Ohashi, Corinne Fruit, Sensuke Ogoshi|2021|J.Org.Chem.|86|6015|doi:10.1021/acs.joc.1c00361
DOI: 10.5517/ccdc.csd.cc270g4w
title: CCDC 2056017: Experimental Crystal Structure Determination

description: Related Article: Shinnosuke Horiuchi, Sangjoon Moon, Akitaka Ito, Jacopo Tessarolo, Eri Sakuda, Yasuhiro Arikawa, Guido H. Clever, Keisuke Umakoshi|2021|Angew.Chem.,Int.Ed.|60|10654|doi:10.1002/anie.202101460
DOI: 10.5517/ccdc.csd.cc270g3v
title: CCDC 2056016: Experimental Crystal Structure Determination

description: Related Article: Shinnosuke Horiuchi, Sangjoon Moon, Akitaka Ito, Jacopo Tessarolo, Eri Sakuda, Yasuhiro Arikawa, Guido H. Clever, Keisuke Umakoshi|2021|Angew.Chem.,Int.Ed.|60|10654|doi:10.1002/anie.202101460
DOI: 10.6084/m9.figshare.14515464
title: Information bias in the Canadian Occupational Performance Measure Supplementary file Participant demographic data

description: Supplementary file is Participant demographic data including COPM.
DOI: 10.6084/m9.figshare.14515464.v2
title: Information bias in the Canadian Occupational Performance Measure Supplementary file Participant demographic data

description: Supplementary file is Participant demographic data including COPM.
DOI: 10.6084/m9.figshare.14515464.v1
title: Information bias in the Canadian Occupational Performance Measure Supplementary file Participant demographic data

description: Supplementary file is Participant demographic data including COPM.
DOI: 10.25919/tqsg-gx79
title: Parkes observations for project P1038 semester 2021APRS_02

description: PSR~J1759-2402 is one of a small handful of pulsars which are in orbit about high mass stars. Its orbital period is 8.3 years and the orbit is highly eccentric with periastron expected in 2021 March. Although discovered at Parkes, the Lovell telescope has been monitoring the pulsar over many years. However, it’s restricted bandwidth, maintenance schedule and poorer polarization capability make it unsuitable to follow the pulsar as it enters and leaves the eclipse by the companion. In contrast, the UWL on Parkes with its wide- band and excellent polarization characteristics means that we can, and already have determined scattering, polarization, dispersion measure and rotation measure changes as the pulsar enters its companion wind. We request a continuation of our weekly observations of the pulsar to track its progress on the far side of periastron.
DOI: 10.25919/ynhp-hx94
title: Parkes observations for project P885 semester 2021APRS_02

description: We propose to continue observing the magnetars 1E 1547.0-5408 and PSR J1622-4950 weekly, to track their rotation, flux density, and polarisation. The revolutionary UWL capabilities promise new opportunities to disentangle still mysterious radio emission mechanisms in magnetars. This promise is supported by the recent follow up of XTE J1810-197, again a radio magnetar after 10 years dormant, and of the hot-off-the-press magnetar Swift J1818.0-1607, for which our exciting recent results with UWL motivate an increased monitoring cadence to once weekly.
DOI: 10.5281/zenodo.4728978
title: Monaco upgrade plan tel-file test

description: Monaco upgrade plan tel-file test
DOI: 10.5281/zenodo.4728977
title: Monaco upgrade plan tel-file test

description: Monaco upgrade plan tel-file test
DOI: 10.5281/zenodo.4725931
title: SIRAH-CoV2 initiative: T307I Mutation in a SARS-CoV-2 Spike from sub-Antarctic Chile

description: This dataset contains the trajectories of 10 microseconds-long coarse-grained molecular dynamics simulations of the soluble part of the wild-type spike protein of SARS-CoV2, the single mutant D614G, and the double mutant T307I/D614G. Simulations are based on the PDB structure 6XR8. Loops were completed using the SwissProt sever, and glycans were not included. Simulations were performed using the SIRAH force field 2.0 running with the Gromacs 2018.3 package at the Institut Pasteur de Montevideo under the conditions reported in Machado et al. JCTC 2019, adding 150 mM NaCl according to Machado & Pantano JCTC 2020. The following files in gromacs format are provided for each simulation: i) a .psf containing the topological information (connectivity, etc), ii) a topology (.top) ii) a big .xtc file containing 10 microseconds of the CG protein recorded every 200 picoseconds (50000 frames) iii) a smaller .xtc file containing the same trajectory but with only one frame per nanosecond (1000 frames) iv) a .gro file with the initial configuration Finally, the file sirah_vmdtk.tcl contains a series of macros and scripts that facilitate the visualization and analysis of the CG trajaectories. Step-By-Step tutorials for visualizing and analyzing CG trajectories using SirahTools can be found at www.sirahff.com. To take a quick look at a trajectory using VMD 1.9.3, run the command: &gt; vmd SpikeWT-SIRAH.psf SpikeWT-SIRAH.gro SpikeWT-SIRAH-1kfrm.xtc -e sirah_vmdtk.tcl Note that you can use normal VMD drawing methods as vdw, licorice, etc., and coloring by restype, element, name, etc. This dataset is part of the SIRAH-CoV2 initiative for data sharing. For further details, please contact Sergio Pantano (spantano@pasteur.edu.uy).
DOI: 10.5281/zenodo.4728984
title: Tel / DICOM plan pairs

description: Monaco tel files with their corresponding pairs. Files are added whenever PyMedPhys fails to convert the same between the two.
DOI: 10.34943/6a2aed0c-27e4-46d8-ba43-f7ae3329b582
title: ODP 1027C LiDAR Deployed 2020-09-28

description: The Technical University of Munich LiDAR SN001 was deployed on 2020-09-28 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a LiDAR. The LiDAR (Light Detection And Ranging) device is used to measure scattering properties and absorption length in water. It uses a pulsed laser to send pulses of light down to an object and measures the time it takes to bounce off it and return back to the detector. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/ef2edb3c-b89b-4058-8fb4-3299b12499cb
title: ODP 1027C LiDAR Deployed 2020-09-28

description: The Technical University of Munich LiDAR SN002 was deployed on 2020-09-28 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a LiDAR. The LiDAR (Light Detection And Ranging) device is used to measure scattering properties and absorption length in water. It uses a pulsed laser to send pulses of light down to an object and measures the time it takes to bounce off it and return back to the detector. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.25345/c5081n
title: MassIVE Reanalysis RMSV000000340.1 - CoronaMassKB Hackathon: MassIVE/CCMS MSStats on Maestro/ MaxQuant reanalysis of MSV000085510 / PXD018594 Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus
title: CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSStats on Maestro/ MaxQuant reanalysis of MSV000085510 / PXD018594 Shotgun proteomics of Vero E6 cells infected by Italy-INMI1 SARS-CoV-2 virus
DOI: 10.25345/c5vf95
title: MassIVE Reanalysis RMSV000000341.1 - CoronaMassKB Hackathon: MassIVE/CCMS MSStats on Maestro reanalysis of MSV000085494 / PXD018357 Inhibition of growth factor signaling prevents SARS-CoV-2 replication (Phospho files only)
title: CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSStats on Maestro reanalysis of MSV000085494 / PXD018357 Inhibition of growth factor signaling prevents SARS-CoV-2 replication (Phospho files only)
DOI: 10.21227/hvaj-rc42
title: Honeybees and wasps

description: This dataset relates to behavior observed in honebees attacked by wasps
DOI: 10.5281/zenodo.4728699
title: World-wide Research Dataset

description: This dataset is built through open data, which make use of three identifiers: ORCID, DOI, and ISNI. Using this dataset is possible to study the trajectories and the collaborations of the research environment at different scales: individuals, institutions, and countries. It is released through the generous support of the Swiss National Science Foundation that financially supported the project. Further information is available at http://p3.snf.ch/project-181930 and https://p3.snf.ch/project-194442 or at https://dariorodighiero.com.
DOI: 10.5281/zenodo.3627722
title: World-wide Research Dataset

description: This dataset is built through open data, which make use of three identifiers: ORCID, DOI, and ISNI. Using this dataset is possible to study the trajectories and the collaborations of the research environment at different scales: individuals, institutions, and countries. It is released through the generous support of the Swiss National Science Foundation that financially supported the project. Further information is available at http://p3.snf.ch/project-181930 and https://p3.snf.ch/project-194442 or at https://dariorodighiero.com.
DOI: 10.6084/m9.figshare.14515560
title: Untitled Item

description: All scripts and namelists for paper titled:<br>New lapse rate and CAPE formulae for entraining parcels<br>
DOI: 10.25345/c5qr6w
title: MassIVE Reanalysis RMSV000000317.3 - CoronaMassKB Hackathon: MassIVE/CCMS MSStats on Maestro/ MaxQuant reanalysis of MSV000080026 Calu-3 cell proteome response to H1N1 virus
title: CoronaMassKB Hackathon: Early-access community reanalysis of mass spectrometry data. MassIVE/CCMS MSStats on Maestro/MaxQuant reanalysis of MSV000080026 Calu-3 cell proteome response to H1N1 virus
DOI: 10.6084/m9.figshare.14515566.v1
title: Gastric microbiome profile throughout gastric carcinogenesis: beyond helicobacter

description: Gastric dysbiosis has been hinted as a potential cause of gastric cancer. However, changes in microbiome throughout the major stages of gastric carcinogenesis remain mostly unknown. To describe gastric microbiome at different stages, analysing for the first time dysbiosis specifically in patients with early gastric cancer (EGC). Cross-sectional study including patients (<i>n</i> = 77) with endoscopically and histologically confirmed normal stomachs (controls; <i>n</i> = 25), advanced atrophic gastritis with intestinal metaplasia (IM; <i>n</i> = 18) and EGC (<i>n</i> = 34). Endoscopic biopsies from antrum and corpus (<i>n</i> = 154) were analyzed. Next-generation sequencing was performed characterizing microbial communities down to the species level based on full-length 16SrRNA gene profiling. Significant differences were found in the microbiome profile between the groups. Firmicutes were more frequent (<i>p</i> = .012) and Proteobacteria were less frequent (<i>p</i> = .04) both in the IM and EGC when comparing to controls. Relative frequency of <i>Helicobacter pylori</i>, when present, was much higher in the controls (83%) when comparing to the other groups (IM 1%, EGC 27%; <i>p</i> = .006), being the dominant bacteria only in the controls. Dysbiosis was present already and more significantly at the IM stage, with two bacteria progressively increasing from controls to IM then to cancer: <i>Gemella</i> from 1.48 to 3.9% (<i>p</i> = .014); and <i>Streptococcus</i> from 19.3 to 33.7% (<i>p</i> = .04), being the EGC dominant bacteria. Our results confirm <i>Helicobacter pylori</i> dominancy in non-atrophic stomachs and progressive dysbiosis throughout gastric carcinogenesis. <i>Gemella</i> but particularly <i>Streptococcus</i> is significantly increased in patients with EGC. Specific modulation of these bacteria may change gastric cancer risk.
DOI: 10.6084/m9.figshare.14515566
title: Gastric microbiome profile throughout gastric carcinogenesis: beyond helicobacter

description: Gastric dysbiosis has been hinted as a potential cause of gastric cancer. However, changes in microbiome throughout the major stages of gastric carcinogenesis remain mostly unknown. To describe gastric microbiome at different stages, analysing for the first time dysbiosis specifically in patients with early gastric cancer (EGC). Cross-sectional study including patients (<i>n</i> = 77) with endoscopically and histologically confirmed normal stomachs (controls; <i>n</i> = 25), advanced atrophic gastritis with intestinal metaplasia (IM; <i>n</i> = 18) and EGC (<i>n</i> = 34). Endoscopic biopsies from antrum and corpus (<i>n</i> = 154) were analyzed. Next-generation sequencing was performed characterizing microbial communities down to the species level based on full-length 16SrRNA gene profiling. Significant differences were found in the microbiome profile between the groups. Firmicutes were more frequent (<i>p</i> = .012) and Proteobacteria were less frequent (<i>p</i> = .04) both in the IM and EGC when comparing to controls. Relative frequency of <i>Helicobacter pylori</i>, when present, was much higher in the controls (83%) when comparing to the other groups (IM 1%, EGC 27%; <i>p</i> = .006), being the dominant bacteria only in the controls. Dysbiosis was present already and more significantly at the IM stage, with two bacteria progressively increasing from controls to IM then to cancer: <i>Gemella</i> from 1.48 to 3.9% (<i>p</i> = .014); and <i>Streptococcus</i> from 19.3 to 33.7% (<i>p</i> = .04), being the EGC dominant bacteria. Our results confirm <i>Helicobacter pylori</i> dominancy in non-atrophic stomachs and progressive dysbiosis throughout gastric carcinogenesis. <i>Gemella</i> but particularly <i>Streptococcus</i> is significantly increased in patients with EGC. Specific modulation of these bacteria may change gastric cancer risk.