cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/1dcead51e005d68b2f6e1118984f6340
title: Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE) - Raw images for the analysis of stomatal density and length 2021-2022

description: Stomatal density and length were measured on leaves of sugar maple (Acer sacharrum Marsh.) and yellow birch (Betula alleghaniensis Britton.) trees in New Hampshire at the Bartlett Experimental Forest, Hubbard Brook Experimental Forest, and Jeffers Brook as part of the Multiple Elementation Limitation in Northern Hardwood Ecosystems (MELNHE) study. Leaves were collected in late July and early August in 2021 and 2022 from the tops of dominant and codominant trees using a shotgun. These measurements were made on 3 leaves from each tree.
 These data correspond with other foliar trait data collected from the same trees in 2021 and 2022. That EDI package is as follows:
 Hong, S.D., K.E. Gonzales, C.R. See, and R.D. Yanai. 2021. MELNHE: Foliar Chemistry 2008-2016 in Bartlett, Hubbard Brook, and Jeffers Brook (12 stands) ver 1. Environmental Data Initiative. https://doi.org/10.6073/pasta/b23deb8e1ccf1c1413382bf911c6be19
 This data package contains the raw images underlying the data reported in a separate data package on stomatal density and length: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-hbr&identifier=372
 These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.15468/dl.j43hkc
title: Occurrence Download

description: A dataset containing 799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liparis bathyarcticus Parr, 1931",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 799 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067211-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y28wuy
title: Occurrence Download

description: A dataset containing 526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes atropalpus (Coquillett, 1902)"
 ]
}

 The dataset includes 526 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067212-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3c7an
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phthorimaea operculella (Zeller, 1873)",
 "Country is China",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067214-241126133413365/datasets/export for details.
DOI: 10.6073/pasta/19f91acc139591ab4e5c6269a025c510
title: High-frequency water quality data for three urban streams in Boston, MA (USA), 2021-2022

description: This dataset contains high-frequency water quality data for three urban stream locations in the great Boston, Massachusetts metropolitan area. Multiparameter sondes with sensors to measure temperature, pH, specific conductivity, optical dissolved oxygen (DO), turbidity, colored dissolved organic matter (CDOM), and optical brighteners (OB) were deployed from 23 November 2021 to 20 December 2022. Data were collected at 15-minute intervals.
DOI: 10.15468/dl.r5pbqq
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liparis coheni Able, 1976",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 259 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067215-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tk6pwd
title: Occurrence Download

description: A dataset containing 92554 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Galapagos Subtidal Biodiversity"
 ]
}

 The dataset includes 92554 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067213-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snkutn
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liparis inquilinus Able, 1973",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 856 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067218-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xr3bf
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Ebrietas anacreon (Staudinger, 1876)"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067217-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63zudv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phthorimaea operculella (Zeller, 1873)",
 "Country is China",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067219-241126133413365/datasets/export for details.
DOI: 10.15468/dl.tgs74q
title: Occurrence Download

description: A dataset containing 1165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liparis tunicatus Reinhardt, 1836",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1165 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067220-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xevz6n
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes caballus (Theobald, 1912)"
 ]
}

 The dataset includes 46 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067222-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrrgt3
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lipogenys gillii Goode & Bean, 1895",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 35 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067223-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4r2jd6
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pomacea canaliculata (Lamarck, 1822)",
 "Country is Philippines",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 32 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067224-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14641763
title: patchy_clathrates

description: Input files, all raw data (trajectories), calculated observablesand all the remaining data that support the findings of this study are availablefrom the corresponding author upon reasonable request.Please contact corresponding author by an email.

lukasz.baran@mail.umcs.pl
DOI: 10.5281/zenodo.14641764
title: patchy_clathrates

description: Input files, all raw data (trajectories), calculated observablesand all the remaining data that support the findings of this study are availablefrom the corresponding author upon reasonable request.Please contact corresponding author by an email.

lukasz.baran@mail.umcs.pl
DOI: 10.15468/dl.aw44at
title: Occurrence Download

description: A dataset containing 206 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophius gastrophysus Miranda Ribeiro, 1915",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 206 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067225-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5yk2bj
title: Occurrence Download

description: A dataset containing 462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes camptorhynchus (Thomson, 1869)"
 ]
}

 The dataset includes 462 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067226-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14264518
title: pyMethods2Test: A Dataset of Python Tests Mapped to Focal Methods

description: The data is stored in two ZIP files. If you only want to use the pre-mined focal data, download the focal-data.zip file. The larger raw-data.zip file includes the raw data used to generate the focal data, such as the classes and methods extracted from the repositories. This second file may be useful as the starting point for other tasks.

Note that the data files are quite large: raw.zip is around 42GB uncompressed and focal-data.zip is around 2GB uncompressed.

See the README.md file for more details about the scripts and how to use the datasets.
DOI: 10.5281/zenodo.14264519
title: pyMethods2Test: A Dataset of Python Tests Mapped to Focal Methods

description: The data is stored in two ZIP files. If you only want to use the pre-mined focal data, download the focal-data.zip file. The larger raw-data.zip file includes the raw data used to generate the focal data, such as the classes and methods extracted from the repositories. This second file may be useful as the starting point for other tasks.

Note that the data files are quite large: raw.zip is around 42GB uncompressed and focal-data.zip is around 2GB uncompressed.

See the README.md file for more details about the scripts and how to use the datasets.
DOI: 10.17909/5bm4-pf48
title: SAND_M82_F814W
DOI: 10.15468/dl.uutc9q
title: Occurrence Download

description: A dataset containing 132011 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Country is one of (Colombia)",
 "GadmGid is one of (COL)",
 "HasCoordinate is one of (true)",
 "HasGeospatialIssue is one of (false)",
 "IucnRedListCategory is one of (CR, EN)"
 ]
 }
 ]
}

 The dataset includes 132011 records from 864 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067153-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xfznu
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lopholatilus chamaeleonticeps Goode & Bean, 1879",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 314 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067228-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14364135
title: Geolocator Data Package: Trajectories of Northern Wheatears breeding in Val Piora (Switzerland) and Val Troncea (Italy)

description: This repository contains the raw data and the trajectory information generated with the GeoPressureR workflow, following the GeoLocator Data Package standard (v0.1). The complete code used to generate this datapackage can be found at Rafnuss/Val-Piora-Wheatear.

It contains 10 tags fitted on Northern Wheatears in Val Piora, Switzerland, between 2016 and 2020 and retrieved between 2017 and 2021, and 4 tags fitted in Val Troncea, Italy, in 2019 and 2020 and retrieved in 2020 and 2021.

 

The main publication associated with this paper is:



Rime, Y., Nussbaumer, R., Briedis, M. et al. Multi-sensor geolocators unveil global and local movements in an Alpine-breeding long-distance migrant. Mov Ecol 11, 19 (2023). https://doi.org/10.1186/s40462-023-00381-6
DOI: 10.5281/zenodo.14364136
title: Geolocator Data Package: Trajectories of Northern Wheatears breeding in Val Piora (Switzerland) and Val Troncea (Italy)

description: This repository contains the raw data and the trajectory information generated with the GeoPressureR workflow, following the GeoLocator Data Package standard (v0.1). The complete code used to generate this datapackage can be found at Rafnuss/Val-Piora-Wheatear.

It contains 10 tags fitted on Northern Wheatears in Val Piora, Switzerland, between 2016 and 2020 and retrieved between 2017 and 2021, and 4 tags fitted in Val Troncea, Italy, in 2019 and 2020 and retrieved in 2020 and 2021.

 

The main publication associated with this paper is:



Rime, Y., Nussbaumer, R., Briedis, M. et al. Multi-sensor geolocators unveil global and local movements in an Alpine-breeding long-distance migrant. Mov Ecol 11, 19 (2023). https://doi.org/10.1186/s40462-023-00381-6
DOI: 10.5281/zenodo.14641780
title: Geolocator Data Package: Trajectories of Northern Wheatears breeding in Val Piora (Switzerland) and Val Troncea (Italy)

description: This repository contains the raw data and the trajectory information generated with the GeoPressureR workflow, following the GeoLocator Data Package standard (v0.1). The complete code used to generate this datapackage can be found at Rafnuss/Val-Piora-Wheatear.

It contains 10 tags fitted on Northern Wheatears in Val Piora, Switzerland, between 2016 and 2020 and retrieved between 2017 and 2021, and 4 tags fitted in Val Troncea, Italy, in 2019 and 2020 and retrieved in 2020 and 2021.

 

The main publication associated with this paper is:



Rime, Y., Nussbaumer, R., Briedis, M. et al. Multi-sensor geolocators unveil global and local movements in an Alpine-breeding long-distance migrant. Mov Ecol 11, 19 (2023). https://doi.org/10.1186/s40462-023-00381-6
DOI: 10.5281/zenodo.14641770
title: patchy_chromatic

description: Input files, all raw data (trajectories), calculated observablesand all the remaining data that support the findings of this study are availablefrom the corresponding author upon reasonable request.Please contact corresponding author by an email.

lukasz.baran@mail.umcs.pl
DOI: 10.5281/zenodo.14641771
title: patchy_chromatic

description: Input files, all raw data (trajectories), calculated observablesand all the remaining data that support the findings of this study are availablefrom the corresponding author upon reasonable request.Please contact corresponding author by an email.

lukasz.baran@mail.umcs.pl
DOI: 10.6073/pasta/170d1dfd2fb65638862463faf842ddfa
title: Multiple Element Limitation in Northern Hardwood Ecosystems (MELNHE) - stomatal density and length 2021-2022

description: Stomatal density and length were measured on leaves of sugar maple (Acer sacharrum Marsh.) and yellow birch (Betula alleghaniensis Britton.) trees in New Hampshire at the Bartlett Experimental Forest, Hubbard Brook Experimental Forest, and Jeffers Brook as part of the Multiple Elementation Limitation in Northern Hardwood Ecosystems (MELNHE) study. Leaves were collected in late July and early August in 2021 and 2022 from the tops of dominant and codominant trees using a shotgun. These measurements were made on 3 leaves from each tree.
 These data correspond with other foliar trait data collected from the same trees in 2021 and 2022. That EDI package is as follows:
 Hong, S.D., K.E. Gonzales, C.R. See, and R.D. Yanai. 2021. MELNHE: Foliar Chemistry 2008-2016 in Bartlett, Hubbard Brook, and Jeffers Brook (12 stands) ver 1. Environmental Data Initiative. https://doi.org/10.6073/pasta/b23deb8e1ccf1c1413382bf911c6be19
 This data package contains the stomatal density and length derived from the raw images in a separate EDI data package: https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-hbr&identifier=321
 These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
DOI: 10.6073/pasta/029b089ae5fbad09515c19e2e8bc3331
title: A droplet digital polymerase chain reaction assay to detect rare helminth parasites infecting natural host populations (Vancouver Island 2023, University of Wisconsin Madison Laboratory colony 2024)

description: Helminth infections represent a significant challenge to human, livestock, and wildlife health, yet they remain relatively under-studied, especially in terms of their ecological impacts. Better understanding of how these parasites spread in wildlife populations could improve our ability to predict and manage disease transmission across various species. Traditional detection methods, such as visually identifying parasites in environmental samples or infected hosts, often fall short, especially during the early stages of infection when parasite loads are minimal. In this study, we introduce a highly sensitive and precise droplet digital PCR (ddPCR) assay that quantifies helminth DNA in aquatic habitats, focusing on the 18S rRNA gene as a marker. 
 
 These data utilize the model host-parasite system between the tapeworm Schistocephalus solidus, and its cyclopoid copepod host, Acanthocyclops robustus.
 
 The molecular assays are built around creating an infection standard in the lab, where copepods were singly infected with a single tapeworm parasite. We extracted DNA from 100 infected adults and used this as a standard to translate gene copy numbers from the ddPCR reactions to actual animal values. After creating a known lab standard, we then use the generated probes and primers to detect (and quantify!) infection burdens in field samples, which include both water filter samples (eDNA) and zooplankton tows from several lakes around Vancouver Island, B.C. The data presented here include well-specific data from ddPCR runs (amplitude of individual level oil droplets in the reaction) as well as each ddPCR analysis in its entirety. In order to prove the specificity of probes and probe-primers, we include here ddPCR runs of closely related helminth species, Schistocephalus cotti and Schistocephalus pungitii. We also consider the binding to another genera of copepod, the calanoid Eurytomora. All of the data wrangling, analysis, and data visualization are included as .Rmd files in the "Other Entities" section.
DOI: 10.6084/m9.figshare.28200014
title: Combined dataset (ITS, LSU, <i>rpb2</i>, <i>tub2</i>, and <i>tef1</i>) and (ITS, LSU) - Introducing two new genera, <i>Paivomyces gen. nov.</i> and <i>Pseudoselenophoma gen. nov.</i>, in <i>Saccotheciaceae</i> (<i>Dothideales</i>)

description: Four new taxas fungi in <i>Saccotheciaceae.</i>
DOI: 10.6084/m9.figshare.28200014.v2
title: Combined dataset (ITS, LSU, <i>rpb2</i>, <i>tub2</i>, and <i>tef1</i>) and (ITS, LSU) - Introducing two new genera, <i>Paivomyces gen. nov.</i> and <i>Pseudoselenophoma gen. nov.</i>, in <i>Saccotheciaceae</i> (<i>Dothideales</i>)

description: Four new taxas fungi in <i>Saccotheciaceae.</i>
DOI: 10.6084/m9.figshare.28200014.v1
title: Combined dataset (ITS, LSU, <i>rpb2</i>, <i>tub2</i>, and <i>tef1</i>) - Introducing two new genera, <i>Paivomyces gen. nov.</i> and <i>Pseudoselenophoma gen. nov.</i>, in <i>Saccotheciaceae</i> (<i>Dothideales</i>)

description: Four new taxas fungi in <i>Saccotheciaceae.</i>
DOI: 10.15468/dl.fcxkpt
title: Occurrence Download

description: A dataset containing 244866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anthracothorax F.Boie, 1831"
 ]
}

 The dataset includes 244866 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067157-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukxxph
title: Occurrence Download

description: A dataset listing the 2729 species recorded in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-97.90138 22.684,-97.7738 22.9164,-97.78552 23.44017,-98.34838 23.45581,-98.56586 23.11396,-98.40951 22.67227,-97.90138 22.684))"
 ]
}

 The dataset's 2729 records were derived from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012940-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.