cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11997261.v1
title: Firm Performance and the Strategic Components of Bankruptcy Reorganization Plans

description: Abstract We investigate the influence of bankruptcy reorganization plans on the recovery of distressed firms. Using qualitative comparative analysis (QCA), specifically, we perform an in-depth investigation of a set of reorganization plans submitted by publicly traded companies in Brazil. We find that the improvement in firm performance is positively related to a good diagnosis of the factors causing the crisis, a clear definition of the firm’s resources, and a clear identification of the firm’s competitive strengths. We also find that the absence of a good industry analysis is a critical condition for a reorganization plan to fail. However, the explicit mentioning of the firm’s relevant market is negatively associated with the company’s uplifting in crisis. We discuss the theoretical and managerial implications of these findings.
DOI: 10.6084/m9.figshare.12280541.v4
title: DepMap 20Q2 Public

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 769 cell lines, the RNAseq data includes 1304 cell lines, and the copy number data includes 1745 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br>v2 changes: The README file in version 1 was missing descriptions for the files Achilles_raw_readcounts_failures.csv and Achilles_logfold_change_failures.csv. Version 2 corrects this.<br>v3 changes: Reverted to the README file from v1, because there are no _failures.csv files<br>v4 changes: The CCLE_expression file was in TSV format, and now is in CSV format. RNAseq data have been altered for three cell lines (see README for more details).
DOI: 10.6084/m9.figshare.14959863.v1
title: Trait-based responses to cessation of nutrient enrichment in a tundra plant community

description: Data and code accompanying the manuscript "Trait-based responses to cessation of nutrient enrichment in a tundra plant community" in Oecologia. Please contact us before any use of the data. 2004 and 2010 species data was originally published in Eskelinen A, Harrison S, Tuomi M (2012) 10.1890/12-0393.1 and Eskelinen A, Stark S, Männistö M (2009) 10.1007/s00442-009-1362-5 and should be cited with those references. Trait data was published in the 2012 ms above and Kaarlejärvi E, Eskelinen A, Olofsson J (2017) 10.1038/s41467-017-00554-z and should be cited with those references.
DOI: 10.6084/m9.figshare.29099852.v1
title: Predictive Accuracy and Clinical Outcomes of the Hypotension Prediction Index: A Systematic Review and Meta-analysis

description: Hypotension prediction index has been shown to accurately predict intraoperative hypotension. Nevertheless, the impact of the Hypotension Prediction Index (HPI) on postoperative complications remains inconclusive. The current body of evidence presents mixed findings: while some observational and retrospective studies have reported reductions in postoperative complications, shorter hospital stays, and a lower incidence of surgical site infections with HPI-guided therapy, recent randomised controlled trials (RCTs) in major abdominal surgery have shown no significant differences in postoperative outcomes compared to standard goal-directed therapy. This systematic review and meta-analysis aim to fill that gap by associating HPI with postoperative outcomes. The findings will provide critical insights for clinicians, researchers, and guideline developers regarding the potential role and limitations of HPI in perioperative care.
DOI: 10.17632/77zg5cy59y
title: Dataset for the paper titled "Lean manufacturing problem-solving tools and their effect on total quality management"

description: The file with the model in WarpPls software (.pjr extension), as well as the summary of results (MS Excel) are attached.
DOI: 10.6084/m9.figshare.18551084.v3
title: 0.1 degree Daily Estimation of Reference Evapotranspiration over Egypt

description: The daily records of reference Evapotranspiration (ET<sub>o</sub>), in mm, cover the land of Egypt and temporally span from 1981 to 2020 at high horizontal resolution (0.10°×0.10°). Temporal coverage of data may be extended in the future when recent observations are available.<br> The methodology for developing this dataset is presented at https://doi.org/10.1002/joc.7894. <br> Please, cite the paper when using this dataset as: Sobh, M.T., Nashwan, M.S. and Amer, N. (2022), High Resolution Reference Evapotranspiration for Arid Egypt: comparative analysis and evaluation of empirical and artificial intelligence models. Int J Climatol. Accepted Author Manuscript. https://doi.org/10.1002/joc.7894
DOI: 10.6084/m9.figshare.28502867.v1
title: Additional file 12 of Comprehensive genetic variant analysis reveals combination of KRAS and LRP1B as a predictive biomarker of response to immunotherapy in patients with non-small cell lung cancer

description: Supplementary Material 12: Additional file 12.xlsx– List of publications withLRP1B: The NSCLC studies in cBioPortal where LRP1B were tested.
DOI: 10.6084/m9.figshare.12152535.v2
title: China Liver Transplant Registry

description: PRC liver transplant registry reports for the years 2005, 2006, and 2011.
DOI: 10.6084/m9.figshare.13363628.v1
title: Tabula Muris Scanpy

description: tabula muris h5ad file processed by scanpy for scvr
DOI: 10.6084/m9.figshare.23665113.v1
title: CARE PH Cancer Registry Data 2017-2022

description: Cancer registry data of patients newly diagnosed or seeking treatment in 44 different hospitals in the Philippines recorded from 2017-2022.
DOI: 10.17632/9wj2d3fxmg
title: Data Availability for Vacher et al. Thermal Metamorphism and Volatile Evolution in Unequilibrated Ordinary Chondrites: Implications for the Delivery of Hydrogen to Terrestrial Planets

description: EA-IRMS single data, thermal modeling outputs, and FTIR spectra.
DOI: 10.17632/vp6ngrjzdy
title: Carbon isotope fractionation between CO2 and carbon in silicate melts at high temperature

description: Supplementary tables and tables in excel format for: Lee, H.J., Mousssallam, Y., Aubaud, C., Iacono-Marziaon, G., Hammond, K., and Ebel, D., Carbon isotope fractionation between CO2 and carbon in silicate melts at high temperature. submitted to, Geochim. Cosmochim. Acta in Mar 2024.
DOI: 10.23645/epacomptox.6062488.v5
title: ReadMe File for ToxCast and Tox21 summary files

description: ReadMe file providing guidance for the ToxCast and Tox21 summary files.
DOI: 10.17632/h4xmx6d436
title: Environmental Management Accounting (EMA)

description: Systematic Literature Review of Environmental Management Accounting
DOI: 10.17632/wbn2v95ds8
title: Cortese el al_Lancet Psyc 2018_OPEN DATA
DOI: 10.6084/m9.figshare.26501623.v1
title: Sleep Quality and Creative Self-Efficacy among College Students_ The Effect of Basic Psychological Needs and Stress.sav

description: Several studies have shown the complex relationship between sleep quality and creativity. Creative self-efficacy, as an individual's self-belief in completing creative tasks, is closely related to individual creative outcomes. This study aimed to explore the relationship between sleep quality and creative self-efficacy, primarily focused on the mediating effect of basic psychological needs and the moderating effect of stress. A sample of 264 college students from Northern China was involved in this study through the Creative Self-Efficacy Scale, Pittsburgh Sleep Quality Index, Basic Psychological Needs Scale, and Perceived Stress Scale. The results indicated that basic psychological needs had a suppression effect on the relation between sleep quality and creative self-efficacy, and stress played a moderating role in the mediation model. Specifically, the sleep quality of high-stress-sensing individuals had a significant negative direct effect on their creative self-efficacy. In contrast, the sleep quality of low-stress-sensing individuals had no significant direct effect on their creative self-efficacy. The results showed that basic psychological needs and stress played important roles in the influenced mechanism of sleep quality to creative self-efficacy and different strategies should be adopted in enhancing creative self-efficacy for individuals with different stress perceptions.
DOI: 10.17632/93cvs2z3mz
title: Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers, Chunhong Zheng et. al

description: RNA-Seq data from 10 patients in "Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers" (Cancer Cell manuscript).
"patientRNAexp.tsv" is FPKM values from Cufflinks, for 10 bulk tumor RNA-Seq samples.
"CRI3571.10X.counts.csv.gz" is 10X single cell gene expression data from Cell Ranger's 'count' command.
"CRI????_CD?.SS2.counts.csv.gz" are Smart-seq2 gene expression data from TraCeR (summarized from transcript to gene level).
DOI: 10.17632/bvthttjk9w
title: Data for: Overprotective/Authoritarian Maternal Parenting is Associated with an Enhanced Error-Related Negativity (ERN) in Young Adult Females

description: Data from young adult females, examining links between error-related brain activity and parenting behaviours in childhood
DOI: 10.6084/m9.figshare.28107431.v1
title: ComFilE 用于笔划

description: The serum SERS spectra of stroke patients and control.
DOI: 10.17605/osf.io/bw2ts
title: Perceiving Through a Language Lens: Scoping review of experimental work on effects of language on colour perception.

description: Online supplement to review paper
DOI: 10.6084/m9.figshare.11936790.v1
title: Modelling of compaction trends of anisotropic elastic properties of shales

description: This dataset includes modelling scripts (MATLAB) and experimental data.The main script is Main_Compaction_Clay.m
DOI: 10.6084/m9.figshare.28243595.v1
title: Possible pregnancy toxemia in a late term twin pregnant harbor seal (<i>Phoca</i> <i>vitulina</i>)

description: Raw zipped CT-data (DICOM) and sagittal slice video (MP4) of harbor seal (<i>Phoca</i> <i>vitulina</i>) that died from possible pregnancy toxemia and carried twins.
DOI: 10.6084/m9.figshare.651717.v1
title: RQ fused cassette raw data for Pseudomonas aeruginosa isolates PS1 and PS26

description: The first column describes the P. aeruginosa isolates (PS1 and PS26) and the gene targeted in the quantitative PCR for measuring their transcription (gcu14; GES-1; aacA4; and the fusion GES-1-aacA4 and rpsL), which was performed in triplicate. Also in this column are the negative controls for each PCR reaction (NTC). The second column displays the cycle threshold (CT), i.e., the PCR cycle in which the fluorescence was detected by the machine. The third and the fourth columns refer to the standard deviation and the average of CT values, respectively, between triplicates. The fifth column refers to the to the normalization of the target gene transcript amount relative to that of endogenous gene (rpsL). The sixth column corresponds to the results of relative quantification. For example, the gcu14 gene and GES gene in PS1 had RQ values of 15,88 and 7,80. It means that gcu14 is 2-fold more transcribed than GES in PS1 isolate.
DOI: 10.6084/m9.figshare.23284454.v1
title: Duren dataset : scATAC + scRNA tables preprocessed (unpaired + aligned)

description: The table named *_aligned_cells.tsv correspond to the tables after computationally pairing of the cells from both modalities (scRNA and scATAC).
DOI: 10.6084/m9.figshare.5970886.v3
title: Time Perception EEG data

description: Time Perception EEG data
DOI: 10.17632/rwbs7645hg
title: EMG data of the Myo Armband

description: This dataset provides EMG data generated by the Myo Armband in response to eight hand gestures. This dataset contains 8 files. Each file consists of 50 readings of the Myo armband for a defined gesture. Each reading includes 100 samples per sensor. The EMG signal is sampled at frequency of 50 samples per second.
DOI: 10.6084/m9.figshare.21175381.v3
title: Supplementary_Data.xlsx

description: All datasets used for the RJMCMC, BDCS, MCDD, and MBD analyses plus the bibliography
DOI: 10.6084/m9.figshare.28387988.v1
title: <b>N</b><b>ovel genomic feature in the brain-specific BRSK2 (Controls)</b>

description: <b>Background:</b> The human <i>BRSK2</i> (Brain-specific Serine/Threonine Kinase 2) is mainly expressed in the brain and is required for neuronal polarization and differentiation. This gene contains the longest 5′ untranslated region (5′ UTR) pentanucleotide short tandem repeat (STR), (CGGCT)6, in human. We hypothesized that this exceptional length may confer selective advantage in cognitive functioning.<b>Methods:</b> We sequenced the region spanning (CGGCT)6 in a sample of 339 unrelated Iranian individuals, consisting of cases affected by late-onset neurocognitive disorder (NCD) (N=163) and matched controls (N=176). Following to our sequencing results, we mapped CGGCT motifs/repeats across the human genome and studied this region across several primate and rodent genomes.<b>Results:</b><b> </b>We found that (CGGCT)6 is part of a compound island of numerous consecutive CGGCT motifs/repeats, ranging from 1 and 6-repeats, stretching the <i>BRSK2</i> core promoter and 5′ UTR. This island is flanked by a CGG-STR in its downstream. Across the human genome, the CGGCT island was unique with respect to density, complexity, and repeat length of CGGCT motifs and repeats. The evolution of the CGGCT island and CGG-STR coincided with the phylogenetic distance of several primates and rodents, signifying directional (rather than random) evolution of this island in these species. While (CGGCT)6 was strictly monomorphic in the human samples studied, a 7-repeat of this motif was detected in the controls only. In another CGGCT-repeat inside the CGGCT island, there was a significant excess of homozygosity for a long allele (4-repeat) in the controls (Mid-P=0.02). At the same locus, a 3-repeat allele was detected in the NCD group only. Moreover, alleles were detected at the extreme short and long lengths of CGG-STR in the NCD group only. Finally, a 5′ UTR G to T point mutation, flanking the CGGCT island was detected in one individual with NCD.<b>Conclusion:</b> We report a novel genomic feature, consisting of a CGGCT motif/repeat island and CGG STR in <i>BRSK2</i> that coincide with directional evolution of primates. Several polymorphic and rare alleles across this region were divergently distributed in the NCD and control groups, signifying a link between this region and cognitive functions in human.
DOI: 10.6084/m9.figshare.5047753.v2
title: lung 4D-CT data sets

description: 7 lung 4D-CT data sets. Detailed information of the data sets can be found in Read me file.
DOI: 10.6084/m9.figshare.22263967.v1
title: Longitudinal Paper.sav

description: Data from paper submitted to PLOS One.
DOI: 10.6084/m9.figshare.5483569.v1
title: A Confocal Fluorescence Microscopy Brain Data Archive

description: p { margin-bottom: 0.1in; direction: ltr; line-height: 120%; text-align: left; } Advancements in the field of microscopy and imaging have pushed the boundaries of what was once thought possible in many fields of research. New techniques coupled with the application of new technologies allow researchers to probe further and with greater accuracy to answer increasingly complex questions. While these new techniques allow for far greater specificity of observation and increased sensitivity in regard to both resolution and frequency, the amount of data generated is increasing to a point where conventional systems are unable to manage it. At the current time, there is no practical way to analyze, mine, share or interact with large (100+TB) brain image datasets. The development of a national, scalable archival solution and gateway for such datasets is a pressing problem extremely important and central to the NIH mission as in the future there will be a continuous and sustained growth in data scale. To address this issue, we are establishing the BRAIN Imaging Archive. The Archive will encompass the deposition of datasets, the integration of datasets into a searchable web- accessible system, the redistribution of datasets, and a computational enclave to allow researchers to process datasets in-place and share restricted and pre-release datasets. The Archive will, for the first time, provide researchers with a practical way to analyze, mine, share or interact with large (100+TB) image datasets by creating a unique public resource for the BRAIN research community.
DOI: 10.17632/r9b362tthp
title: ITC-MNP: A diverse dataset for image file fragment classification

description: The dataset includes image file fragments with length of 4096 bytes from five formats (JPG, BMP, GIF, PNG, and TIFF), each with different conversion settings. The source images fall into three content categories: Nature, People, and Medical. Overall, the dataset contains 501,000 fragments. These fragments consist of file headers and incomplete end-of-file fragments, completed with random bytes, mimicking the way operating systems handle data when the size is not a multiple of the sector size. This method simulates real-world scenarios where fragments are recovered from a hard drive.
Results section in supporting document provided, proves the effectiveness of our approach on collection of this dataset.
The fragments stored inside (*.dat) files can be accessed using Frag_extractor matlab script.

--- V 2.0: Added fragments for TIFF data that do not include any non-compressed codecs (available in NC_tiff.zip file)
DOI: 10.6084/m9.figshare.1132584.v4
title: NPG 2014 Social Networks survey

description: These files relate to the article by Richard van Noorden published in Nature on 14th August 2014 summarising the Nature Social Networks survey carried out in May-July 2014.
DOI: 10.6084/m9.figshare.22723760.v1
title: Timeline of Music Notation

description: This timeline of music notation is by no means complete and should be treated as a work in progress. I regularly come across a couple dozen or so music notation systems a month now, often quite by accident while doing research in other areas, and as many of those intentional [or not] searches fall into regional clusters it made more sense to start documenting them as such. This means that this Music Notation Timeline page gets updated far less frequently. <br> I’ll only be updating this intermittently while I focus on several other annotated text documents of the timeline (separated primarily by region) and populating the database with examples. The timeline will eventually be incorporated into a Global Music Theory resource which will include other projects like the <em>Arabic Music Theory Bibliography (650-1650) Project</em>, the <em>Early Black Musicians, Composers, and Music Scholars (505-1505 CE)</em>, and the <em>Bibliography of Slave Orchestras and Ensembles</em>. <br> With literally hundreds, if not thousands of examples from the 20th century to today, that may very well be divided into a separate project especially as a number of new notations are being developed directly as notation programs and software (see the Non-CWN Music Notation Software list for many examples). <br> One thing to keep in mind with music notation is Sandeep Bhagwati’s (2013a and 2013b) idea of <em>Notational Perspective</em>: the idea that all notations have a universal AND a context-dependent feature which shapes what’s stable over time and what is malleable. <br> <em>PUBLISHED 2/4/2017; UPDATED 4/30/2023</em>
DOI: 10.6084/m9.figshare.26177578.v2
title: Trait coordination R project

description: "Trait coordination R project" including data and R scripts to reproduce analyses, figures and tables from "Drier, more seasonal climates strengthen coordination of hydraulic, leaf economic and reproductive strategies in subtropical forest tree communities"Authors: Julian Radford-Smith and John M. DwyerFor and outline of the folder and file structure, and complete metadata, refer to the README.txt file in the R project.<br><b>Abstract</b>Trade-offs relating to resource acquisition and conservation, reproduction and longevity generate considerable trait variation among co-occurring tree species, yet little is known about how the nature and strength of these trade-offs shift along gradients of resource availability. For rainforest and dry forest tree communities distributed across a continuous gradient of moisture availability in Australia’s subtropics (600 to 2,500 mm rainfall yr<sup>-1</sup>), we examined the coordination of hydraulic, leaf economic and reproductive traits using a metric of multi-trait covariance and pairwise trait correlations. We hypothesized that trait coordination would be strongest at the dry and wet extremes of the moisture gradient, capturing strong moisture- and light-driven trade-offs, respectively. Overall trait covariance peaked in the driest sites and declined linearly along the regional moisture gradient, a trend also seen in the correlation of many trait pairs. In dry forests, stronger coordination of hydraulic and leaf economic traits captured a drought tolerance-drought avoidance spectrum, while correlations involving seed size reflected a ‘stature-recruitment’ trade-off. Albeit far weaker, we found that shade-tolerance and height-driven constraints on hydraulic function drove some trait coordination in light-limited sites. Our findings underscore the importance of interpreting trait-based trade-offs within the context of each site’s resource availability. We established that moisture limitation places much stronger constraints on trait combinations than light limitation, and identified key trade-off axes that are likely to become increasingly important under ongoing climate change.
DOI: 10.6084/m9.figshare.6047060.v1
title: Matlab files from Effects of Lewis number on the statistics of the invariants of velocity gradient tensor and local flow topologies in turbulent premixed flames

description: Matlab codes used to produce the figures
DOI: 10.17632/xskkwncmzz
title: How effective are green spending multipliers? Eco-friendly vs non-eco-friendly spendings in OECD economies

description: The replication package is uploaded in line with prerequisite of the journal for the article titled "How effective are green spending multipliers? Eco-friendly vs non-eco-friendly spendings in OECD economies" for a possible publication in the Energy Economics.