cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7y5p66dp48.1
title: Practicality of low-impact control options for Heracleum mantegazzianum, pilot field study

description: Aims were to investigate the practicality and efficacy of alternatives to glyphosate-based herbicides (GBHs) when trying to eradicate or limit the presence of Heracleum mantegazzianum along a three mile river stretch. The terrain was difficult (wading, climbing steep banks, moving through dense vegetation) so tools had to be relatively easy to carry and use. Quadrats spanning 4x4m and including a minimum of six plants were set up, three different growth variables recorded, and one of four treatments applied. For more info on background and methods please see related link. The dataset contains two spreadsheets. The first sheet 'raw data' shows the values of the three different growth variables recorded at each quadrat. Values were recorded at two separate times: just before a treatment was applied (column suffix 'pre' in dataset) and 3-4 weeks later (column suffix 'post' in dataset). The second sheet 'regrowth data' display fractional values. These have been calculated by dividing 'post' values with 'pre' values, and show the regrowth after treatment as a proportion of the original growth value recorded. Potential differences between treatments were analysed using One-way ANOVA. Welch Test was used where assumptions for non-equal variances were not met. Our results showed burning to be significantly less efficient at reducing the number of plants. Spraying and root-cutting treatments were not significantly different but the latter took approximately five times longer to apply. See related link for more info.
DOI: 10.17632/w8jv9ngnsk.3
title: Proteomics explains client specificity of the human TRAP complex in ER protein import

description: In mammalian cells, one-third of all polypeptides are transported into/across the ER-membrane via the Sec61-channel. While the Sec61-complex facilitates translocation of all polypeptides with amino-terminal signal peptides (sp) or transmembrane helices, the Sec61-associated TRAP-complex supports translocation of only a subset, i.e. in a substrate-specific manner. To characterize TRAP-dependent precursors, we combined siRNA-mediated TRAP depletion in human cells, label-free quantitative proteomics, and differential expression analysis. The results were validated by western blotting and quantitative RT-PCR as well as under conditions of over-production of TRAP-dependent precursors and their mutated variants in the presence or absence of MG132, a proteasome inhibitor. Sp analysis of TRAP-clients revealed above-average glycine-plus-proline content as the distinguishing feature. Thus, TRAP acts as an sp-receptor on the ER-membrane’s cytosolic face for precursor polypeptides with high glycine-plus-proline content in their sp and triggers substrate-specific (and regulated) opening of the Sec61-channel by its interaction with the ER-lumenal hinge of Sec61α. The work is about to be published under the title Proteomics reveals signal peptide features determining the client specificity in human TRAP-dependent ER protein import by Duy Nguyen, Regine Stutz, Stefan Schorr, Sven Lang, Stefan Pfeffer, Hudson H. Freeze, Friedrich Förster, Volkhard Helms1 Johanna Dudek & Richard Zimmermann Here we present the original western blot data plus additional SP and TMH analyses, which are presented in a pptx figure and a xlsx table, respectively . Additional physicochemical properties of TRAP clients with SP or TMH. In addition to the hydrophobicity score and glycine/proline (GP) content, we determined the ΔGapp values of SP sequences (a) and transmembrane helices (TMH) (b) with the ΔGapp predictor for TM helix insertion (http://dgpred.cbr.su.se) and plotted these values against the relative count (Density). Glycine and glycine plus proline content of human signal peptides. We used custom scripts to compute the glycine (G) and glycine plus proline (GP) content of human SP sequences from UniProtKB entries. GP content was calculated as the total fraction of glycine and proline in the respective sequence. Notably, 1382 SP of a total of 3513 have a GP content of &gt; 15%, the proposed threshold for TRAP involvement and, therefore, potential regulation by phosphorylation and/or calcium binding by TRAP subunit α.
DOI: 10.25549/gar-c81-41004
title: Hamlin Garland, letter, 1901-12-28, to S.K. Wauchape

description: Hamlin Garland, Hotel Jefferson, [102 East 15th Street], New York, New York, USA, letter, [1901] December 28, to S.K. Wauchape. "I am very much obliged to you and when I come down I will show my appreciation in a substantial way." -- first line. On Letter copy book leaf 26.
DOI: 10.25549/gar-c81-41114
title: Hamlin Garland, letter, 1902-10-29, to James Pond

description: Hamlin Garland, [Mapleshade, 357 Garland Street [later named]], West Salem, Wisconsin, USA, letter, [1902] October 29, to James Pond. "What is the matter with the Pond Lecture Bureau?" -- first line. On Letter copy book leaf 110.
DOI: 10.5281/zenodo.1419639
title: Calculation Verification And Graph Generation

description: This spreadsheet is used to verify the results of the calculations for the selected best values from the programs 8075DegRise_CO2NMDPSIRR_V5.bas (DOI 10.5281/zenodo.1418561) and 8075DegRise_NoNMDP_V1.bas (DOI  10.5281/zenodo.1419629). It is also used to determine the percentage of heat added by each component, and finally to generate graphical representations of the data results.
description: This is an open office spreadsheet which can be opened with Microsoft Excel.
DOI: 10.5281/zenodo.1419640
title: Calculation Verification And Graph Generation

description: This spreadsheet is used to verify the results of the calculations for the selected best values from the programs 8075DegRise_CO2NMDPSIRR_V5.bas (DOI 10.5281/zenodo.1418561) and 8075DegRise_NoNMDP_V1.bas (DOI  10.5281/zenodo.1419629). It is also used to determine the percentage of heat added by each component, and finally to generate graphical representations of the data results.
description: This is an open office spreadsheet which can be opened with Microsoft Excel.
DOI: 10.17632/djvyxd7syt.1
title: Peripheral inflammation induces allodynia and increases c-Fos expression in the basolateral amygdala

description: The research hypothesis is that peripheral inflammation will cause an increase in c-Fos expression in brain areas involved in the control of pain. We induced mechanical allodynia with the administration of the complete Freund’s adjuvant (CFA) in the hindpaw that resulted in mechanical allodynia at the third day post administration. A behavioral test was carried out and mechanical allodynia was observed. Two hours later, the rats were sacrificed and the brains collected for inmunohistochemical analysis.
DOI: 10.17632/vfpfxkbcbd.1
title: CtIP-mediated fork protection synergizes with BRCA1 to suppress genomic instability upon DNA replication stress. Przetocka et al
DOI: 10.17632/xpdmwcz2sj.1
title: SLNCR Proposed Greenway Route: 1km wide Habitats Interpretation Map

description: This book of maps was generated using ArcGIS 10.2.2 and ArcGIS Imagery Basemap (Imagery_Prime_World) (coordinate system GCS_WGS_1984). The maps illustrate photointerpreted habitats to Level 3 Fossit (2000) Irish Habitat Classification. Classification accuracy was assessed through groundtruthing of random stratified sampling sites (14% total study area representation) and generating an error matrix of validated habitats. Observed Accuracies: Areal Habitat Photointerpretation
DOI: 10.25549/gar-c81-41021
title: Hamlin Garland, letter, 1904-05-10, to Miss Glass

description: Hamlin Garland, [Mapleshade, 357 Garland Street [later named]], West Salem, Wisconsin, USA, letter, [1904] May 10, to Miss Glass [(Inter-State Lecture Bureau), Cincinatti, Ohio, USA]. "I am returning the circular which I think we can cut to four pages without harm." -- first line. On Letter copy book leaf 197.
DOI: 10.25549/gar-c81-41043
title: Hamlin Garland, letter, 1901-11-01, to R.E. Morningstar

description: Hamlin Garland, 474 Elm Street, Chicago, Illinois, USA, letter, [1901] November 1, to R.E. Morningstar. "I have arranged to speak for Rev[erend] Bigelow on Dec[ember] 4th." -- first line. On Letter copy book leaf 5.
DOI: 10.17632/73xj2dx44k.1
title: Coherent Maps Data

description: All data is in either MATLAB .mat format or images in .TIF format. Data includes processed neuronal activity derived from single-photon calcium imaging in mice, as well as positional information while mice explore one of two arenas. Folder names indicate the name of the arena, their chronological order within a day, and the arena rotation (or not) from the standard configuration on the first session of day 1 and day 2 (e.g. "2 - octagon 90CW" indicates that folder contains data from the second session recorded in the octagon arena and that the arena was rotated 90 degrees clockwise). NeuronROIs.mat: contains neuron ROIs for a given session recorded using calcium imaging. Pos_align.mat: position data (x_adj_cm and y_adj_cm) in centimeters aligned to imaging data. PSAbool = putative spiking activity (rows = neurons, columns = timestamps), RawTrace and LPtrace are the same as PSAbool but for full calcium traces and low-pass filtered calcium traces. ICmovie_min_proj.tif: minimum projection of imaging movie for a given session, used for image/neuron registration between sessions.
DOI: 10.17632/gfs5k2mzxz.1
title: Raw data : manuscript Rev 2 Connexin-43 Is Essential for optimal cGAS Function During Cytosolic DNA-Sensing

description: Raw Data for Revision 2 manuscript Connexin-43 Is Essential for optimal cGAS Function During Cytosolic DNA-Sensing.
DOI: 10.17632/hkjz8w9c6p.1
title: Histone ubiquitination by the DNA damage response is required for efficient DNA replication in unperturbed S-phase. Schmid et al.

description: Aiming at better understanding the role of non-canonical ubiquitin-mediated events in the control of DNA replication, we made quite relevant observations on the role of key DNA damage response factors – ATM/RNF8/RNF168/53BP1 – in ensuring complete and accurate DNA replication. In a nutshell, we found that the histone ubiquitin ligase RNF168 associates with PCNA at a subset of replication factories and is required for proper DNA replication in unperturbed S phase. RNF168-deficient cells show accumulation of reversed forks and reduced fork speed, which relies on MRE11-dependent reversed fork processing. These replication phenotypes are shared with other key DDR factors, ATM, RNF8 and 53BP1, and are recapitulated in cells derived from patients affected by the RIDDLE and Ataxia Telangiectasia syndromes, caused by loss of RNF168 and ATM, respectively. RNF168-deficient cells show defects in replicating a prototype of difficult-to-replicate regions, i.e. expanded GAA repeats, previously shown to induce transient fork slowing and remodelling. These replication defects are associated with detectable chromosome abnormalities in mitosis.
DOI: 10.17632/mh34bc6gty.1
title: An ion permeable state of the Glycine Receptor captured by Molecular Dynamics

description: The dataset presented here is supporting the article "An ion permeable state of the Glycine Receptor captured by Molecular Dynamics" (Cerdan et. al., Structure). Are available the two DCD trajectories, related to Figure 2 and Figure S2: - Trajectories/MD-open_protein_membrane_skip20.dcd - Trajectories/MD-open-replica_protein_membrane_skip20.dcd and the the corresponding topology file: - Trajectories/protein_membrane.psf leading to the MD-open structure: - MD-open.pdb that we characterized as a model for the active state of the Glycine Receptor alpha 1 (See Main Text for details). Only the protein and the membrane are available in these DCD files and a step size of 20 is applied in respect to the original trajectories. Additionally, we provide a short (10ns) all-atom DCD trajectory of the free permeation of a chloride anion ("name CLA and resid 129"), related to Movie S1 and Movie S2: - Trajectories/permeation.dcd and its corresponding topology file: - Trajectories/permeation.psf Visualization can be achieved with various software, for example VMD. See all details in our article.
DOI: 10.25549/gar-c81-41024
title: Hamlin Garland, letter, 1902-05-28, to Charles L. Wagner

description: Hamlin Garland, [Mapleshade, 357 Garland Street [later named]], West Salem, Wisconsin, USA, letter, [1902] May 28 to Charles L. Wagner. "I have written to Hollister Bros. [Brothers] making further protest. I will not pay that bill without explanation." -- first line. On Letter copy book leaf 63.
DOI: 10.25549/gar-c81-41102
title: Hamlin Garland, letter, 1903-06-2?, to "sir"

description: Hamlin Garland, [Mapleshade, 357 Garland Street [later named]], West Salem, Wisconsin, USA, letter, [1903 June 18-25], to "sir". "I wish you would make two or three snap shots of the old Sem. Bg. [Seminary Building] and of the north class room and the chapel and include them in the shipment of the other prints you have made." -- first line. On Letter copy book leaf 165.
DOI: 10.5281/zenodo.1419641
title: Data For Calculating 1880 To 1975 Sea Surface Temperature

description: The data used in the programs 8075DegRise_CO2NMDPSIRR_V5.bas (DOI  10.5281/zenodo.1418561) and  8075DegRise_NoNMDP_V1.bas (DOI  10.5281/zenodo.1419629).

All data is entered one item per line.The order of the entries is:

First entry – The total number of sea surface temperature entries.

Second entry – The number of entries for all other data.

Third entry – The offset from the first entry of a set of data to the year 1880. This is the same for all sets of data except sea surface temperature which is based at 1880 and never changes.

The nonzeroed non-normalized sea surface temperature anomalies, the number of which is specified by the First entry

The nonzeroed non-normalized North Magnetic Dip Pole kilometers moved from the previous year, the number of entries is specified in the Second entry.

The nonzeroed non-normalized solar irradiation average for this year, the number of entries is specified in the Second entry.

The nonzeroed non-normalized CO2 ppm average for this year, the number of entries is specified in the Second entry.
description: This is an ASCII text file.
DOI: 10.5281/zenodo.1419642
title: Data For Calculating 1880 To 1975 Sea Surface Temperature

description: The data used in the programs 8075DegRise_CO2NMDPSIRR_V5.bas (DOI  10.5281/zenodo.1418561) and  8075DegRise_NoNMDP_V1.bas (DOI  10.5281/zenodo.1419629).

All data is entered one item per line.The order of the entries is:

First entry – The total number of sea surface temperature entries.

Second entry – The number of entries for all other data.

Third entry – The offset from the first entry of a set of data to the year 1880. This is the same for all sets of data except sea surface temperature which is based at 1880 and never changes.

The nonzeroed non-normalized sea surface temperature anomalies, the number of which is specified by the First entry

The nonzeroed non-normalized North Magnetic Dip Pole kilometers moved from the previous year, the number of entries is specified in the Second entry.

The nonzeroed non-normalized solar irradiation average for this year, the number of entries is specified in the Second entry.

The nonzeroed non-normalized CO2 ppm average for this year, the number of entries is specified in the Second entry.
description: This is an ASCII text file.
DOI: 10.17632/5b3785vbz5.1
title: Raw data : manuscript Rev 2 Connexin-43 Is Essential for optimal cGAS Function During Cytosolic DNA-Sensing version-2 fig 5 and fig 6 complete

description: version-2 fig 5 and fig 6 complete
DOI: 10.17632/9y8xrhvhmy.1
title: Data from: Comparison of shallow water seston among biogenic habitats (eelgrass, oysters, bare) on tidal flats

description: Hypothesis: Biogenic species (eelgrass, oysters) influence water properties such as velocity and particulates, especially in shallow water. We tracked parcels of water across tidal flats using custom Lagrangian drifters and collected samples of water at the start and end of drifts across different habitat types. The study design was nested, including 5 coastal sites in Washington State, USA, 3 subsites per site, each habitat type at a subsite (eelgrass, oysters, bare), and three water levels at each habitat patch. Density and biomass of benthic organisms were evaluated in 10 quadrats per patch. We measured water velocity based on the distance per duration of each drift, chlorophyll-a concentrations, total suspended solids, and organic content near the water surface. Shallowest depths were 0.1 m of water, and most drifts occurred in &lt;2 m of water. These response variables were examined for main effects of water depth and habitat type, as well as depth x habitat interactions that would indicate that water properties become more homogeneous as the distance to the bottom increases. We found that water over eelgrass patches contained higher concentrations of total suspended solids and chlorophyll-a, as well as higher chlorophyll-a per suspended solids, than did bare habitat. In all habitat types, total suspended solids were inversely related to water depth; that is, shallower water contained higher particulate loads. Water velocity slowed at shallow water depths near low tide, as well as over eelgrass patches relative to other habitats. No depth x habitat interactions were detected.
DOI: 10.17632/tjs9h3s6z2.1
title: Raw data for Reviewer 3 Fig 6 CX43-IFnb MANUSCRIPT

description: Fig6
DOI: 10.17632/tngf9w3pgd.1
title: C. elegans AWA Olfactory Neurons Fire Calcium-Mediated All-or-None Action Potentials

description: Raw electrophysiological recording traces and calcium imaging movies shown in this paper and accompanying analyzed data.
DOI: 10.25549/gar-c81-37563
title: George Edgar Vincent, letter, 1917-08-02, to Hamlin Garland

description: George Edgar Vincent (The Rockefeller Foundation), 61 Broadway, New York, New York, USA, letter, 1917 August 2, to Hamlin Garland, 71 East 92nd Street, New York Manhattan, New York, USA. "Your friendly note awaited my return Monday from a tour of a dozen military training camps." -- first line.
DOI: 10.25549/gar-c81-41031
title: Hamlin Garland, letter, 1902-01-10, to Shurmer Sibthorp

description: Hamlin Garland (The Players Club), [16 Gramercy Place], New York, New York, USA, letter, [1902] January 10, to Shurmer Sibthorp. "I recall you as the tall young Irishman who was so kind to me in London." -- first line. On Letter copy book leaf 29.
DOI: 10.25549/gar-c81-41123
title: Hamlin Garland, letter, 1903-05-18, to Mr. Thompson

description: Hamlin Garland, [Mapleshade, 357 Garland Street [later named]], West Salem, Wisconsin, USA, letter, [1903] May 18, to Mr. Thompson. "I am sending back today part of my invoice of the [illegible] for the Angeles[?]. Some of the other pieces we would like to return another month." -- first line. On Letter copy book leaf 146.
DOI: 10.25549/gar-c81-42495
title: Hamlin Garland, letter, 1927-06-27, to Mary Derieux

description: Hamlin Garland, letter, "Monday" [1927? June?] 27, to Mary Derieux. "I am enclosing a report and some suggestions to be read at the meeting provided I do not get down in time." -- first line.
DOI: 10.17632/cmyhpvspp9.1
title: Data of Polarization Curves, AC Impedance and Slow Strain Rate Tensile Test

description: These data describe the SCC behavior of X80 pipeline steel in a simulated solution of Yingtan soil containing SRB with different cathode potentials .
DOI: 10.17632/jtbnrrmstt.1
title: Functional genetic variants revealed by massively parallel precise genome editing. Sharon et al
DOI: 10.17632/jyzzjrwshp.1
title: Accuracy of the HSE hybrid functional to describe many-electron interactions and charge localization in semiconductors

description: Data for: Accuracy of the HSE hybrid functional to describe many-electron interactions and charge localization in semiconductors. Folder: SiV_q-1_D3d. Input and output files and spin density for the negatively charged SiV in diamond in D3d symmetry (Quantum-Espresso). Folder: SiV_q-1_C2h. HSE and DMC spin densities of the negatively charged SiV in diamond in C2h symmetry (Gaussian .cube).
DOI: 10.17632/mfzn798757.1
title: Increase of summer monsoon precipitation in Southern China since the Little Ice Age

description: Stalagmite Wu37 oxygen isotope data from Wulu Cave, southern China
DOI: 10.25549/gar-c81-37546
title: Edward Wagenknecht, letter, 1939-11-18, to Hamlin Garland

description: Edward Wagenknecht (University of Washington), Seattle, Washington, USA, letter, 1939 November 18, to Hamlin Garland. "I want to thank you for the two very kind invitations you sent me." -- first line.
DOI: 10.25549/gar-c81-41093
title: Hamlin Garland, letter, 1903-06-29, to Mr. Hodges

description: Hamlin Garland, [Mapleshade, 357 Garland Street [later named]], West Salem, Wisconsin, USA, letter, [1903] June 29, to Mr. Hodges. "I have a new novel of New York City and the mountain[?] west which I am anxious to serialize at once in order to publish in Oct[ober] probably through the Harpers." -- first line. On Letter copy book leaf 168.
DOI: 10.17632/79nwr89r3n.1
title: Supporting Materials for Creative Goal Modeling for Innovative Requirements

description: Data supporting IST paper : Creative Goal Modeling for Innovative Requirements J. Horkoff, N. A. Maiden, D. Asboth Abstract [Context] When determining the functions and qualities (a.k.a. requirements) for a system, creativity is key to drive innovation and foster business success. However, creative requirements must be practically operationalized, grounded in concrete functions and system interactions. Requirements Engineering (RE) has produced a wealth of methods centered around goal modeling, in order to graphically explore the space of alternative requirements, linking functions to goals and dependencies. In parallel work, creativity theories from the social sciences have been applied to the design of creative requirements workshops, pushing stakeholders to develop innovative systems. Goal models tend to focus on what is known, while creativity workshops are expensive, require a specic skill set to facilitate, and produce mainly paper-based, unstructured outputs. [Objective] Our aim in this work is to explore benecial combinations of the two areas of work in order to overcome these and other limitations, facilitating creative requirements elicitation, supported by a simple extension of a well-known and structured requirements modeling technique. [Method] We take a Design Science approach, iterating over exploratory studies, design, and summative validation studies. [Results] The result is the Creative Leaf tool and method supporting creative goal modeling for RE. [Conclusion] We support creative RE by making creativity techniques more accessible, producing structured digital outputs which better match to existing RE methods with associated analysis procedures and transformations.
DOI: 10.17632/cdzkz8bfyg.1
title: Dataset 1 - Processed data

description: 3D-FDTD Modelling of Optical Biosensing based on Gold-Coated Nanoporous Anodic Alumina PROCESSED DATA
DOI: 10.17632/kdjvjbd9t7.1
title: Behavioural and oculomotor evidence that ideological priming affects deception

description: The data described the effect of different political priming (images of politicians and ideological words) on the tendency of politically non-aligned participants to lie during a card game. The data show how political priming can shape moral decisions and how it can modulate how people look at different type of information useful for taking a decision. This in turn was observed to affect participants' decision to deceive another person. The file contains the variables and data used in the analyses. A description of the meaning of the variables is provided in a excel sheet withing the file.
DOI: 10.17632/vv8c2nh5pj.1
title: Dataset 1 - Raw data

description: 3D-FDTD Modelling of Optical Biosensing based on Gold-Coated Nanoporous Anodic Alumina RAW DATA