cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7695737.v1
title: Data from Influence of principal stress effect on deformation and permeability of coal containing beddings under true triaxial stress conditions

description: <i>In situ</i> stress is generally an anisotropic/true triaxial stress (<i>σ</i><sub>1</sub> &gt; <i>σ</i><sub>2</sub> &gt; <i>σ</i><sub>3</sub>). Bedding weaken the continuity and integrity of coal. It is critical to understand the mechanical behaviour and gas migration of coal under true triaxial stress conditions. We performed experiments of cubic coal samples to investigate the permeability evolution and mechanical behaviour of coal under true triaxial stress conditions by using newly developed true triaxial geophysical apparatus. We analysed the effect of principal stresses on deformation and permeability characteristics of coal containing bedding planes. The results show that volumetric strain, stress states and bedding directions determine the permeability comprehensively. The variable quantity of strain was the largest in the direction normal to the bedding plane. The expansion or compression degree was characterized by the difference between the major and minor principal strain (<i>ε</i><sub>1 </sub>− <i>ε</i><sub>3</sub>). Essentially, this represents the difficulty degree with regard to coal being compressed at the initial stress state and the deformation degree in <i>ε</i><sub>1</sub> and <i>ε</i><sub>3</sub> direction. The variation of (<i>ε</i><sub>1 </sub>− <i>ε</i><sub>3</sub>) was consistent to that of permeability. Under an identical true triaxial stress condition, permeability was smaller when larger stress was applied in the direction normal to the bedding plane. Additionally, stress level in the direction parallel to the bedding planes and the directions between stresses in the direction paralleling to the bedding planes and the flow direction also affect the permeability and strain. By solving lateral expansion coefficient, coal also exhibited anisotropic properties.
DOI: 10.5281/zenodo.10672663
title: IODP Expedition 393 Elemental analysis (CHNS)

description: Fundamental elemental component (total carbon, hydrogen, nitrogen, and sulfur) fluctuations help define the origin, depositional environment, and diagenetic alteration of source materials. To determine C, H, N, and S, solid samples are reacted with a catalyst, separated by chromatography, and detected by thermal conductivity on a FlashEA 1112 CHNS elemental analyzer. Organic carbon can be directly measured on the elemental analyzer by acidification of the sample to drive off carbonate as carbon dioxide before analyzing. Total organic carbon on this report is measured rather than calculated.
DOI: 10.5281/zenodo.10672664
title: IODP Expedition 393 Elemental analysis (CHNS)

description: Fundamental elemental component (total carbon, hydrogen, nitrogen, and sulfur) fluctuations help define the origin, depositional environment, and diagenetic alteration of source materials. To determine C, H, N, and S, solid samples are reacted with a catalyst, separated by chromatography, and detected by thermal conductivity on a FlashEA 1112 CHNS elemental analyzer. Organic carbon can be directly measured on the elemental analyzer by acidification of the sample to drive off carbonate as carbon dioxide before analyzing. Total organic carbon on this report is measured rather than calculated.
DOI: 10.6084/m9.figshare.12414347
title: Additional file 2 of Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis

description: Additional file 2: Table S2. Quantifiable protein list of AS patient group versus three different control groups (OA, gout and RA), showing 385, 500, and 485 quantifiable proteins for AS vs OA, AS vs gout, and AS vs RA comparison sets, respectively. Protein accession number, gene symbols, fold-change, and p-value are provided.
DOI: 10.6084/m9.figshare.12414347.v1
title: Additional file 2 of Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis

description: Additional file 2: Table S2. Quantifiable protein list of AS patient group versus three different control groups (OA, gout and RA), showing 385, 500, and 485 quantifiable proteins for AS vs OA, AS vs gout, and AS vs RA comparison sets, respectively. Protein accession number, gene symbols, fold-change, and p-value are provided.
DOI: 10.6073/pasta/e043bac2f37ee341e9524d880a25c28b
title: Examination of protein-like fluorophores in chromophoric dissolved organic matter (CDOM) in a wetland and coastal environment for the wet and dry seasons of the years 2002 and 2003 (FCE)

description: Water samples are collected at the end of the dry and the wet season from all LTER sites and stored on ice until return to the lab. They are pre-filtered through pre-combusted GF/F filters and ultrafiltered and concentrated with a Pellicon 2 Mini tangential flow ultrafiltration system.Concentrated samples were then analyzed using fluorescence and SEC-HPLC. This CDOM optical study revealed the presence of two classes of compounds associated with the protein-like peak (peak T; excitation/emission (Ex/Em) maxima at around 280 nm/325 nm), which have very different chemical structures and ecological roles. In addition to proteins, we propose phenolic compounds as possible origins of peak T in coastal and wetland environments. In this study, natural water samples were obtained from subtropical rivers and estuarine environments within the Florida Coastal Everglades (FCE) ecosystem. The samples were ultra-filtered and excitation-emission fluorescence matrices (EEMs) were obtained. The EEMs showed the presence of four peaks with Ex/Em maxima at around 280 nm/325 nm (T), less than 260 nm/460 nm (A), 300 nm/412nm (M), and 350 nm/470 nm (C). To better understand the nature of peak T, the components originating this peak were separated using size exclusion chromatography (SEC) and detected by fluorescence emission at Ex/Em = 280 nm/325 nm. The elution curves revealed the presence of two elution peaks at a molecular weight of greater than 50K (void volume; T1) and around 7.6K (T2). This result suggested the need of cautious interpretation in the use of peak T as a proxy for the detection of proteinaceous materials in wetland and estuarine environments, since significant amounts of potentially interfering phenolic compounds are leached from senescent biomass in wetland and coastal ecosystems. As such EEM spectra of gallic acid an important component of hydrolysable tannins, and condensed tannins extracted from red mangroves (Rhizophora mangle) showed the presence of a peak maxima at a similar position to peak T (260/346 and 275/313 nm, respectively), suggesting these phenolic compounds can be possible sources of peak T.
DOI: 10.6084/m9.figshare.12414356
title: Additional file 3 of Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis

description: Additional file 3: Table S3. Differentially expressed proteins (DEPs) in AS vs OA, AS vs gout, and AS vs RA comparison sets, defined as the proteins with &gt; 1.5-fold-change and &lt; 0.05 p-value. Gene symbols, Log2 fold-change and descriptions of the proteins are provided.
DOI: 10.6084/m9.figshare.12414356.v1
title: Additional file 3 of Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis

description: Additional file 3: Table S3. Differentially expressed proteins (DEPs) in AS vs OA, AS vs gout, and AS vs RA comparison sets, defined as the proteins with &gt; 1.5-fold-change and &lt; 0.05 p-value. Gene symbols, Log2 fold-change and descriptions of the proteins are provided.
DOI: 10.6084/m9.figshare.17132904
title: Additional file 1 of Mutational and clinical spectrum of Japanese patients with hereditary hemorrhagic telangiectasia

description: Additional file 1: Detailed mutational and clinical data of all patients.
DOI: 10.6084/m9.figshare.17132904.v1
title: Additional file 1 of Mutational and clinical spectrum of Japanese patients with hereditary hemorrhagic telangiectasia

description: Additional file 1: Detailed mutational and clinical data of all patients.
DOI: 10.5281/zenodo.10672661
title: IODP Expedition 393 Carbonates composite report

description: This composite report includes data from two analyses (total carbon from Elemental analysis [CHNS], and inorganic carbon from [Coulometer]). Each row combines the  CHNS and Coulometer data from measurements made on the same sample at the same time for a particular section and section offset (depth). If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate data type (Elemental analysis and Coulometer). If the same sample was measured multiple times by any of the methods, results in the report will be combined on one line where possible. Each additional replicate result will be shown in subsequent rows and will be combined where possible. Report includes results for carbon forms: total, inorganic, calcium carbonate, and organic by difference, along with total hydrogen, nitrogen, and sulfur.
DOI: 10.5281/zenodo.10672662
title: IODP Expedition 393 Carbonates composite report

description: This composite report includes data from two analyses (total carbon from Elemental analysis [CHNS], and inorganic carbon from [Coulometer]). Each row combines the  CHNS and Coulometer data from measurements made on the same sample at the same time for a particular section and section offset (depth). If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate data type (Elemental analysis and Coulometer). If the same sample was measured multiple times by any of the methods, results in the report will be combined on one line where possible. Each additional replicate result will be shown in subsequent rows and will be combined where possible. Report includes results for carbon forms: total, inorganic, calcium carbonate, and organic by difference, along with total hydrogen, nitrogen, and sulfur.
DOI: 10.6084/m9.figshare.12414362
title: Additional file 4 of Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis

description: Additional file 4: Table S4. Gene ontology analysis in terms of biological process performed by DAVID tool for the up-regulated (a–c) or and down-regulated DEPs (d–f) in OA, Gout, and RA groups, versus AS group, respectively.
DOI: 10.6084/m9.figshare.12414362.v1
title: Additional file 4 of Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis

description: Additional file 4: Table S4. Gene ontology analysis in terms of biological process performed by DAVID tool for the up-regulated (a–c) or and down-regulated DEPs (d–f) in OA, Gout, and RA groups, versus AS group, respectively.
DOI: 10.6084/m9.figshare.19230111
title: Locally Optimal Design for A/B Tests in the Presence of Covariates and Network Dependence

description: A/B test, a simple type of controlled experiment, refers to the statistical procedure of experimenting to compare two treatments applied to test subjects. For example, many IT companies frequently conduct A/B tests on their users who are connected and form social networks. Often, the users’ responses could be related to the network connection. In this article, we assume that the users, or the test subjects of the experiments, are connected on an undirected network, and the responses of two connected users are correlated. We include the treatment assignment, covariate features, and network connection in a conditional autoregressive model. Based on this model, we propose a design criterion that measures the variance of the estimated treatment effect and allocate the treatment settings to the test subjects by minimizing the criterion. Since the design criterion depends on an unknown network correlation parameter, we adopt the locally optimal design method and develop a hybrid optimization approach to obtain the optimal design. Through synthetic and real social network examples, we demonstrate the value of including network dependence in designing A/B experiments and validate that the proposed locally optimal design is robust to the choices of parameters. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19230111.v1
title: Locally Optimal Design for A/B Tests in the Presence of Covariates and Network Dependence

description: A/B test, a simple type of controlled experiment, refers to the statistical procedure of experimenting to compare two treatments applied to test subjects. For example, many IT companies frequently conduct A/B tests on their users who are connected and form social networks. Often, the users’ responses could be related to the network connection. In this article, we assume that the users, or the test subjects of the experiments, are connected on an undirected network, and the responses of two connected users are correlated. We include the treatment assignment, covariate features, and network connection in a conditional autoregressive model. Based on this model, we propose a design criterion that measures the variance of the estimated treatment effect and allocate the treatment settings to the test subjects by minimizing the criterion. Since the design criterion depends on an unknown network correlation parameter, we adopt the locally optimal design method and develop a hybrid optimization approach to obtain the optimal design. Through synthetic and real social network examples, we demonstrate the value of including network dependence in designing A/B experiments and validate that the proposed locally optimal design is robust to the choices of parameters. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.17132932
title: Additional file 2 of Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling

description: Additional file 2. Ψ sites by Illumina seq. It’s the list of Ψ sites in the rRNA mixture sample identified by our Illumina sequencing experiment.
DOI: 10.6084/m9.figshare.17132932.v1
title: Additional file 2 of Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling

description: Additional file 2. Ψ sites by Illumina seq. It’s the list of Ψ sites in the rRNA mixture sample identified by our Illumina sequencing experiment.
DOI: 10.6084/m9.figshare.12414377
title: Additional file 1 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 1 Table S1. The descriptive statistics, correlation, principal component and systematic cluster analysis of 24 quantitative traits in the association population of P. rockii.
DOI: 10.6084/m9.figshare.12414377.v1
title: Additional file 1 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 1 Table S1. The descriptive statistics, correlation, principal component and systematic cluster analysis of 24 quantitative traits in the association population of P. rockii.
DOI: 10.6084/m9.figshare.9792938
title: Data set for the manuscript "A machine learning approach to quantify the specificity of color-emotion associations and their cultural differences".

description: Each row represents the ratings of the intensity of 20 emotions associated with the color term given by variable "color", by participant identified by variable "subject"
DOI: 10.6084/m9.figshare.9792938.v1
title: Data set for the manuscript "A machine learning approach to quantifying the specificity of color-emotion associations and their cultural differences"

description: Each row represents the ratings of the intensity of 20 emotions associated with the color term given by variable "color", by participant identified by variable "subject"
DOI: 10.5281/zenodo.10672659
title: IODP Expedition 393 Vane shear strength (AVS)

description: Shear strength was measured on section halves using a GEISA automated vane shear (AVS) frame and device controller. The device is suitable for sediment not affected by cementation (i.e., saturated, clay-rich, soft sediment). Shear strength measurements should be considered only approximate, particularly because the influence of pore pressure changes during the undrained experiment cannot be estimated. Report includes vane shear strength at the sample's failure point, maximum torque angle, penetration direction, and rate of vane rotation.
DOI: 10.5281/zenodo.10672660
title: IODP Expedition 393 Vane shear strength (AVS)

description: Shear strength was measured on section halves using a GEISA automated vane shear (AVS) frame and device controller. The device is suitable for sediment not affected by cementation (i.e., saturated, clay-rich, soft sediment). Shear strength measurements should be considered only approximate, particularly because the influence of pore pressure changes during the undrained experiment cannot be estimated. Report includes vane shear strength at the sample's failure point, maximum torque angle, penetration direction, and rate of vane rotation.
DOI: 10.6084/m9.figshare.12414392
title: Additional file 3 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 3 Table S2. Summary of significant EST-SSR marker-trait pairs from the association test results of flower, branch and leaf, and fruit traits in the association population of P. rockii.
DOI: 10.6084/m9.figshare.12414392.v1
title: Additional file 3 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 3 Table S2. Summary of significant EST-SSR marker-trait pairs from the association test results of flower, branch and leaf, and fruit traits in the association population of P. rockii.
DOI: 10.6084/m9.figshare.12414401
title: Additional file 4 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 4 Table S3. The 24 investigation traits and measurement standard in the association population of P. rockii.
DOI: 10.6084/m9.figshare.12414401.v1
title: Additional file 4 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 4 Table S3. The 24 investigation traits and measurement standard in the association population of P. rockii.
DOI: 10.6084/m9.figshare.12414407
title: Additional file 5 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 5 Table S4. Information of 58 polymorphic EST-SSRs for association mapping.
DOI: 10.6084/m9.figshare.12414407.v1
title: Additional file 5 of Association mapping for yield traits in Paeonia rockii based on SSR markers within transcription factors of comparative transcriptome

description: Additional file 5 Table S4. Information of 58 polymorphic EST-SSRs for association mapping.
DOI: 10.5281/zenodo.10672657
title: IODP Expedition 393 Alkalinity and pH

description: Alkalinity was determined by Gran titration with an autotitrator (Metrohm 794 basic Titrino) using 0.1 M HCl at 20 degrees C. Report includes alkalinity, correction factor (if applicable), and pH.
DOI: 10.5281/zenodo.10672658
title: IODP Expedition 393 Alkalinity and pH

description: Alkalinity was determined by Gran titration with an autotitrator (Metrohm 794 basic Titrino) using 0.1 M HCl at 20 degrees C. Report includes alkalinity, correction factor (if applicable), and pH.
DOI: 10.6084/m9.figshare.9793001
title: Metadata record for: The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies

description: This dataset contains key characteristics about the data described in the Data Descriptor The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format 
 3. machine readable metadata file in ISA-Tab format (zipped folder)<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br><br>
DOI: 10.6084/m9.figshare.9793001.v1
title: Metadata record for: The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies

description: This dataset contains key characteristics about the data described in the Data Descriptor The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format 
 <br><br>
DOI: 10.6084/m9.figshare.9793001.v2
title: Metadata record for: The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies

description: This dataset contains key characteristics about the data described in the Data Descriptor The sequence and de novo assembly of Takifugu bimaculatus genome using PacBio and Hi-C technologies. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format 
 3. machine readable metadata file in ISA-Tab format (zipped folder)<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br><br>
DOI: 10.6084/m9.figshare.17133049
title: Additional file 10 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 10: Table S5. Specific primers of twelve candidate genes and GhActin for qRT-PCR.
DOI: 10.6084/m9.figshare.17133049.v1
title: Additional file 10 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 10: Table S5. Specific primers of twelve candidate genes and GhActin for qRT-PCR.
DOI: 10.6084/m9.figshare.17133058
title: Additional file 2 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 2: Table S1. The number of SNPs and Indels per chromosome between two bulks for QTL-seq.
DOI: 10.6084/m9.figshare.17133058.v1
title: Additional file 2 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 2: Table S1. The number of SNPs and Indels per chromosome between two bulks for QTL-seq.
DOI: 10.6084/m9.figshare.17133061
title: Additional file 3 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 3: Table S2. Physical positions of 53 regions detected by QTL-seq.
DOI: 10.6084/m9.figshare.17133052
title: Additional file 11 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 11: Table S6. Specific primers used for virus-induced gene silencing assay.
DOI: 10.6084/m9.figshare.17133061.v1
title: Additional file 3 of QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

description: Additional file 3: Table S2. Physical positions of 53 regions detected by QTL-seq.