cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6461372.v1
title: Additional file 4: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

description: List of the 803 archaeal genomes and the 2078 bacterial genomes we used in our comparative analysis. (XLSX 206 kb)
DOI: 10.6084/m9.figshare.6461360
title: Additional file 3: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

description: BLAST and phylogenetic taxonomic assignments of composite gene family components. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6461360.v1
title: Additional file 3: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

description: BLAST and phylogenetic taxonomic assignments of composite gene family components. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6461336
title: Additional file 5: of Expected and unexpected evolution of plant RNA editing factors CLB19, CRR28 and RARE1: retention of CLB19 despite a phylogenetically deep loss of its two known editing targets in Poaceae

description: Table of essential positions for RNA recognition in the PPRs of CLB19 and the corresponding RNA targets. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.6461336.v1
title: Additional file 5: of Expected and unexpected evolution of plant RNA editing factors CLB19, CRR28 and RARE1: retention of CLB19 despite a phylogenetically deep loss of its two known editing targets in Poaceae

description: Table of essential positions for RNA recognition in the PPRs of CLB19 and the corresponding RNA targets. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.6461327
title: Additional file 1: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

description: Annotation of the 320 ChiC-gene families detected. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.6461327.v1
title: Additional file 1: of Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

description: Annotation of the 320 ChiC-gene families detected. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.6461291
title: Additional file 4: of A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing

description: Table S5. Breakpoint positions predicted by cisFusion and FusionMap. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6461291.v1
title: Additional file 4: of A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing

description: Table S5. Breakpoint positions predicted by cisFusion and FusionMap. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.6461279
title: Additional file 3: of A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing

description: Table S3. TaqMan primer IDs used for validation of CNAs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6461279.v1
title: Additional file 3: of A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing

description: Table S3. TaqMan primer IDs used for validation of CNAs. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6461252
title: Additional file 1: of A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing

description: Table S1. Samples and datasets used in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6461252.v1
title: Additional file 1: of A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing

description: Table S1. Samples and datasets used in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.6461246
title: Additional file 8: of Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice

description: Table S4. Differentially expressed genes responding to adverse stress. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6461246.v1
title: Additional file 8: of Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice

description: Table S4. Differentially expressed genes responding to adverse stress. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6461234
title: Additional file 7: of Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice

description: Table S3. Differentially expressed genes detected by RNA-seq in high- and low-temperature treatment, classified by regulation direction and ranked by log2FC. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.6461234.v1
title: Additional file 7: of Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice

description: Table S3. Differentially expressed genes detected by RNA-seq in high- and low-temperature treatment, classified by regulation direction and ranked by log2FC. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.6461174
title: Additional file 2 of METHimpute: imputation-guided construction of complete methylomes from WGBS data

description: Tables S1-S5. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6461174.v2
title: Additional file 2 of METHimpute: imputation-guided construction of complete methylomes from WGBS data

description: Tables S1-S5. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6461174.v1
title: Additional file 2 of METHimpute: imputation-guided construction of complete methylomes from WGBS data

description: Tables S1-S5. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6461162
title: Additional file 3: of Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice

description: Table S1. Three collections of Chinese indica rice varieties tested in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6461162.v1
title: Additional file 3: of Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice

description: Table S1. Three collections of Chinese indica rice varieties tested in this study. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6461102
title: MOESM1 of Membrane-bound estrogen receptor alpha initiated signaling is dynamin dependent in breast cancer cells

description: Additional file 1. Gene expression and microarray data.
DOI: 10.6084/m9.figshare.6461102.v1
title: MOESM1 of Membrane-bound estrogen receptor alpha initiated signaling is dynamin dependent in breast cancer cells

description: Additional file 1. Gene expression and microarray data.
DOI: 10.6084/m9.figshare.6461093
title: Additional file 1: of The genetic landscape of ganglioglioma

description: Tables S1-S7. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.6461093.v1
title: Additional file 1: of The genetic landscape of ganglioglioma

description: Tables S1-S7. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.6461057
title: MOESM1 of The safety and efficacy of nicotine replacement therapy in the intensive care unit: a randomised controlled pilot study

description: Additional file 1. Study protocol.
DOI: 10.6084/m9.figshare.6461057.v1
title: MOESM1 of The safety and efficacy of nicotine replacement therapy in the intensive care unit: a randomised controlled pilot study

description: Additional file 1. Study protocol.
DOI: 10.6084/m9.figshare.6460934
title: sedmen 2015.pdf

description: immunoradiometric TSH during TRH TEST evaluating optimal thyroid hormone substitutive treatment in 52 hypothyroid patients in a french laboratory of clinical medicine showing that the levothyroxine dosage is 118 micrograms daily
DOI: 10.6084/m9.figshare.6460934.v1
title: sedmen 2015.pdf

description: immunoradiometric TSH during TRH TEST evaluating optimal thyroid hormone substitutive treatment in 52 hypothyroid patients in a french laboratory of clinical medicine showing that the levothyroxine dosage is 118 micrograms daily
DOI: 10.17608/k6.auckland.6459728
title: Spatial eQTL data for GWAS traits

description: Chromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving &gt;20,000 GWAS variants and their target genes (i.e. eGenes). This dataset contains tissue-specific spatial eQTL-eGene associations for &gt;1,350 phenotypes in the study "Chromatin interactions and expression quantitative trait loci reveal genetic drivers of multimorbidity"
DOI: 10.17608/k6.auckland.6459728.v1
title: Spatial eQTL data for GWAS traits

description: Spatial eQTL data for traits in "Chromatin interactions and expression quantitative trait loci reveal genetic drivers of multimorbidity"
DOI: 10.6084/m9.figshare.6459317
title: Market boto videos (Supplementary Material)

description: Videos showing contact calls of Inia calves in the Tocantins River, Eastern Amazon, Brazil
DOI: 10.6084/m9.figshare.6459317.v1
title: Market boto videos (Supplementary Material)

description: Videos showing contact calls of Inia calves in the Tocantins River, Eastern Amazon, Brazil
DOI: 10.6084/m9.figshare.6459263.v2
title: Schizophrenia protein-protein interaction

description: Protein-protein interaction in Schizophrenia using a bioinformatics approach
DOI: 10.6084/m9.figshare.6459245
title: Arabidopsis thaliana - Shoot Apex parts

description: Longitudinal and transverse cross-section of the shoot apex in 7-day-old Arabidopsis thaliana grown under full light. Partitioned for different zones.
DOI: 10.6084/m9.figshare.6458273
title: SHG pol-stacks.zip

description: Raw SHG forward intensity pol-stacks containing 25 grey scales images in TIFF format. Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1. The pol-stack of the corresponding unruptured fibril segment used as a reference is indicated with the small letter c at the end of the file name. The field of view is 100 by 100 micrometers for each image and the pixel size is 200 nm.
DOI: 10.6084/m9.figshare.6458273.v1
title: SHG pol-stacks.zip

description: Raw SHG forward intensity pol-stacks containing 25 grey scales images in TIFF format. Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1. The pol-stack of the corresponding unruptured fibril segment used as a reference is indicated with the small letter c at the end of the file name. The field of view is 100 by 100 micrometers for each image and the pixel size is 200 nm.
DOI: 10.6084/m9.figshare.6458234
title: Fluorescence images.zip

description: Raw fluorescence images in .lsm format (Carl Zeiss) containing two channels: brighfield and fluorescence. Images can be opened using ImageJ (https://imagej.nih.gov/ij/). Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1. The first file for each fibril is an overview including the unruptured fibril reference for comparison purposes; the other files are region of interests indicated with capital letters, A, B, C as appropriate.
DOI: 10.6084/m9.figshare.6458234.v1
title: Fluorescence images.zip

description: Raw fluorescence images in .lsm format (Carl Zeiss) containing two channels: brighfield and fluorescence. Images can be opened using ImageJ (https://imagej.nih.gov/ij/). Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1. The first file for each fibril is an overview including the unruptured fibril reference for comparison purposes; the other files are region of interests indicated with capital letters, A, B, C as appropriate.
DOI: 10.6084/m9.figshare.6458231
title: Stress strain curves.zip

description: Stress-strain curve for each fibril as a two column tabulated text file. The first column is the strain in percent and the second column is the stress in Mega Pascal measured as the tension divided by the dried fibril segment cross-sectional area (File 1, COLUMN E). Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1.
DOI: 10.6084/m9.figshare.6458228
title: AFM images.zip

description: Representative raw AFM images of the dried ruptured fibrils in their original Bruker nanoscope file format. The images were acquired using the Peak Force Quantitative Nanomechanical Mapping mode and can be opened using the freeware Gwyddion (www.gwyddion.net). The first channel is the height, the second channel is the peak force error, the third channel is the DMT modulus, the fourth channel is the logarithm of the DMT modulus, the fifth channel is the adhesion, the sixth channel is the deformation and the seventh channel is the dissipation (http://www.nanophys.kth.se/nanophys/facilities/nfl/afm/icon/bruker-help/Content/PeakForceQNM/Operation/Channels.htm). Only channels 1 and 2 are useful, as the probes used for these measurements were not calibrated to extract quantitative mechanical data. Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1.
DOI: 10.6084/m9.figshare.6458228.v1
title: AFM images.zip

description: Representative raw AFM images of the dried ruptured fibrils in their original Bruker nanoscope file format. The images were acquired using the Peak Force Quantitative Nanomechanical Mapping mode and can be opened using the freeware Gwyddion (www.gwyddion.net). The first channel is the height, the second channel is the peak force error, the third channel is the DMT modulus, the fourth channel is the logarithm of the DMT modulus, the fifth channel is the adhesion, the sixth channel is the deformation and the seventh channel is the dissipation (http://www.nanophys.kth.se/nanophys/facilities/nfl/afm/icon/bruker-help/Content/PeakForceQNM/Operation/Channels.htm). Only channels 1 and 2 are useful, as the probes used for these measurements were not calibrated to extract quantitative mechanical data. Each file is named using the first three columns of File 1, for example: animal 1, common digital extensor tendon, fibril 1 is 1e1.
DOI: 10.6084/m9.figshare.6457937
title: Cantilever spec sheet.xls

description: COLUMN A – Cantilever number COLUMN B – Cantilever manufacturer COLUMN C – Cantilever model COLUMN D – Cantilever type COLUMN E – Cantilever material COLUMN F – Cantilever length in micrometers COLUMN G – Tip height in micrometers COLUMN H – Vertical spring constant in Newton per meter COLUMN I – Lateral spring constant in Newton per meter
DOI: 10.6084/m9.figshare.6457937.v1
title: Cantilever spec sheet.xls

description: COLUMN A – Cantilever number COLUMN B – Cantilever manufacturer COLUMN C – Cantilever model COLUMN D – Cantilever type COLUMN E – Cantilever material COLUMN F – Cantilever length in micrometers COLUMN G – Tip height in micrometers COLUMN H – Vertical spring constant in Newton per meter COLUMN I – Lateral spring constant in Newton per meter
DOI: 10.6084/m9.figshare.6457934
title: Post-rupture imaging data.xls

description: COLUMN A – Animal number (1 or 2) COLUMN B – Tendon type: common digital extensor (e) or superficial digital flexor (f) COLUMN C – Fibril number COLUMN D – Rupture location, at the glue or in the middle of the segment COLUMN E – Average dry fibril height before rupture in nanometers COLUMN F – Average loss of dry fibril height after rupture in nanometers, standard deviation of the measurement is 2 nm COLUMN G – Normalized loss of dry fibril height in percent COLUMN H – Total number of plastic damage sites COLUMN I – Average spacing of plastic damage sites (kinks) in nanometers, Common Digital Extensor fibrils only COLUMN J – Ruptured fibril is fluorescent above background level, Yes or No COLUMN K – Average maximum forward SHG intensity ratio: ruptured segment/unruptured segment COLUMN L – Peak of the distribution of anisotropy parameter ρ characteristic of the second-order non-linear susceptibility tensor along the ruptured fibril COLUMN M – Full-width at half-maximum of the distribution of anisotropy parameter ρ characteristic of the second-order non-linear susceptibility tensor along the ruptured fibril COLUMN N – Peak of the distribution of anisotropy parameter ρ characteristic of the second-order non-linear susceptibility tensor along the unruptured fibril reference COLUMN O – Full-width at half-maximum of the distribution of anisotropy parameter ρ characteristic of the second-order non-linear susceptibility tensor along the unruptured fibril reference
DOI: 10.6084/m9.figshare.6457931
title: Tensile data.xls

description: COLUMN A – Animal number (1 or 2) COLUMN B – Tendon type: common digital extensor (e) or superficial digital flexor (f) COLUMN C – Fibril number COLUMN D – Length in micrometers of prepared fibril segment before pull-to-rupture COLUMN E – Dried fibril segment cross-sectional area in micrometers squared COLUMN F – Cantilever number COLUMN G – Rupture strain in percent COLUMN H – Rupture stress in Mega Pascal with respect to the dry cross-sectional area of the fibril COLUMN I – Toughness in Mega Joules per meter cube obtained by integrating the stress-stain curve (File 3) COLUMN J – High strain modulus in Mega Pascal obtained by linear least-square fit of the last 10% of the stress-strain curve (File 3) COLUMN K – Error on the high strain modulus in Mega Pascal obtained by linear least-square fit of the last 10% of the stress-strain curve (File 3)
DOI: 10.6084/m9.figshare.6456260
title: Bioclimatic data for the Marine Isotope Stage 19

description: Bioclimatic data for the Marine Isotope Stage 19 (MIS19) in the Pleistocene (~785 ka)
DOI: 10.6084/m9.figshare.6456257
title: Bioclimatic data for the mid-Pliocene Warm Period

description: Bioclimatic data for the mid-Pliocene Warm Period (~3.264-3.025 Ma).
DOI: 10.6084/m9.figshare.6456260.v1
title: Bioclimatic data for the Marine Isotope Stage 19

description: Bioclimatic data for the Marine Isotope Stage 19 (MIS19) in the Pleistocene (~785 ka)
DOI: 10.6084/m9.figshare.6456254
title: Bioclimatic data for the Marine Isotope State M2

description: Bioclimatic data for the MIS M2 in the Late Pliocene (~3.3 Ma).
DOI: 10.6084/m9.figshare.6456230
title: EMAST program files

description: Here are input and output files used in running the EMAST program.
DOI: 10.6084/m9.figshare.6456230.v1
title: EMAST program files

description: Here are input and output files used in running the EMAST program.
DOI: 10.6084/m9.figshare.6456224
title: Association analysis of yield, oil and fatty acid content, and main phenotypic traits in <i>Paeonia rockii</i> as an oil crop

description: Tree peony has been recently recognised as an oil crop in China. To identify the molecular markers associated with nine important oil-related traits, we performed association analysis among 205 <i>P. rockii</i> genotypes for three consecutive years using 102 polymorphic simple sequence repeats (SSRs). As a result, the phenotypic traits showed higher coefficient of variation (CV) level ranged from 7.47% to 72.76%. Based on the general linear model (GLM, Q) and mixed linear model (MLM, Q + K), the marker-trait associations were different; however, a total of 74 allelic variations were repeatedly detected in all the three consecutive seasons, with 15 SSR markers associated with five traits, such as yield per plant (Y), the number of valid fruits per plant (PFN), the produced seed ratio (YFWR), hundred seed weight (HKW), and linolenic acid content (LA). In conclusion, the SSR markers ps207, ps328 and ps356 associated with Y, and ps345 associated with LA, which would provide an efficient reference for oil tree peony breeding.
DOI: 10.6084/m9.figshare.6456224.v1
title: Association analysis of yield, oil and fatty acid content, and main phenotypic traits in <i>Paeonia rockii</i> as an oil crop

description: Tree peony has been recently recognised as an oil crop in China. To identify the molecular markers associated with nine important oil-related traits, we performed association analysis among 205 <i>P. rockii</i> genotypes for three consecutive years using 102 polymorphic simple sequence repeats (SSRs). As a result, the phenotypic traits showed higher coefficient of variation (CV) level ranged from 7.47% to 72.76%. Based on the general linear model (GLM, Q) and mixed linear model (MLM, Q + K), the marker-trait associations were different; however, a total of 74 allelic variations were repeatedly detected in all the three consecutive seasons, with 15 SSR markers associated with five traits, such as yield per plant (Y), the number of valid fruits per plant (PFN), the produced seed ratio (YFWR), hundred seed weight (HKW), and linolenic acid content (LA). In conclusion, the SSR markers ps207, ps328 and ps356 associated with Y, and ps345 associated with LA, which would provide an efficient reference for oil tree peony breeding.
DOI: 10.6084/m9.figshare.12891647.v1
title: R0191_20170930a_videos

description: Rat 0191, skilled reaching data collected on 9/30/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.6456215
title: sample.zip

description: sample
DOI: 10.6084/m9.figshare.6456071
title: Reporte de Visita a Guasaganda, NOV 2017

description: Este es el reporte a una visita a la comunidad de Guasaganda para evaluación del estado nutricional. Financiado por IFS. <br>
DOI: 10.6084/m9.figshare.6456071.v1
title: Reporte de Visita a Guasaganda, NOV 2017

description: Este es el reporte a una visita a la comunidad de Guasaganda para evaluación del estado nutricional. Financiado por IFS. <br>
DOI: 10.6084/m9.figshare.6455969
title: Reflex-Win GPR Data Processing Steps

description: Processing Steps applied to the GPR Data from Case Study 1 and 2.
DOI: 10.6084/m9.figshare.6455969.v2
title: Reflex-Win GPR Data Processing Steps

description: Processing Steps applied to the GPR Data from Case Study 1 and 2.
DOI: 10.6084/m9.figshare.6455969.v1
title: Reflex-Win GPR Data Processing Steps

description: Processing Steps applied to the GPR Data from Case Study 1 and 2.
DOI: 10.6084/m9.figshare.6455966
title: Tongxinluo attenuates reperfusion injury-Kang Qi-PLOSone

description: PLOSone
DOI: 10.6084/m9.figshare.6455966.v1
title: Tongxinluo attenuates reperfusion injury-Kang Qi-PLOSone

description: PLOSone
DOI: 10.6084/m9.figshare.6455963
title: MATLAB Automated Interpretation Script.

description: GPR Data Extraction and Attribute Analysis Script
DOI: 10.6084/m9.figshare.6455963.v1
title: MATLAB Automated Interpretation Script.

description: GPR Data Extraction and Attribute Analysis Script
DOI: 10.6084/m9.figshare.6455948
title: skew surges and associated high waters

description: Matlab data files containing the time-series of skew surges and associated high waters of the tide-gauge stations indicated in the file name. The methods used for extracting these variables can be found in <i>Santamaria-Aguilar & Vafeidis, (2018). Are extreme skew surges independent of high water levels in a mixed semidiurnal tidal regime? Submitted to Geophysical Research Letters.</i><br>Time series are storaged as Matrix where the colums are:1-Date Observed Local Maxima water level (in Serial date number)2-Skew surge (cm) referenced to the mean sea level (PSMSL for Station datum information)3-Observed water level (cm) referenced to the mean sea level4-Date High Water Peak (in Serial date number)5-High water (cm) referenced to the mean sea level<br><br>