cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23709744.v1
title: Figure 4

description: ELISpot and ELISA response following immunisation with ChAdOx1 and MVA viral vectors expressing the five antigen construct. ELISpot responses measured following stimulation of splenocytes of vaccinated animals with all antigens and presented as spot forming units per million cells. ELISA performed on the serum of vaccinated animals and plates coated with PPE15 or Ag85A to detect antigen-specific antibodies
DOI: 10.6084/m9.figshare.23709744
title: Figure 4

description: ELISpot and ELISA response following immunisation with ChAdOx1 and MVA viral vectors expressing the five antigen construct. ELISpot responses measured following stimulation of splenocytes of vaccinated animals with all antigens and presented as spot forming units per million cells. ELISA performed on the serum of vaccinated animals and plates coated with PPE15 or Ag85A to detect antigen-specific antibodies
DOI: 10.5525/gla.researchdata.1498
title: INCISE mutational data – INCISE II Batch 1 (Sep 2023)

description: The INCISE project identified 91 index polyp samples from archived FFPE tissue for DNA extraction. The extracted DNA was then passed to the Glasgow Precision Oncology Laboratory (GPOL) for genomic sequencing using GPOL’s bespoke Cancer Plus panel. The output from the sequencing is FASTQ files (~261GB) which will be deposited for at least 10 years in Enlighten.
DOI: 10.6084/m9.figshare.24191449
title: Direct dating of deposition and rift-related alteration of fossil barren red bed units in the North Sea

description: Supplementary data.
DOI: 10.6084/m9.figshare.24191449.v1
title: Direct dating of deposition and rift-related alteration of fossil barren red bed units in the North Sea

description: Supplementary data.
DOI: 10.6084/m9.figshare.24191421
title: Supplementary table 1.docx

description: STROBE MR checklist
DOI: 10.6084/m9.figshare.24191421.v1
title: Supplementary table 1.docx

description: STROBE MR checklist
DOI: 10.58038/ujcm.250923
title: Odkrycie nowych, silnych i selektywnych inhibitorów BuChE- projektowanie, synteza, badania in vitro, in vivo oraz krystalograficzne.  
title: Discovery of new, highly potent and selective inhibitors of BuChE - design, synthesis, in vitro and in vivo evaluation and crystallography studies.
DOI: 10.6084/m9.figshare.21207427
title: Boundary spanning leadership in community-centered geoscience research

description: Community-based research models hold potential to change who conducts geoscience research, its relevance to the public, and how researchers may begin to address historical injustices. However, this potential is contingent on such projects being led in ways that meaningfully and equitably bridge the worlds of scientists and community stakeholders. Here, we present an in-depth, comparative case study of leadership in two place-based, community-based projects funded through an NSF initiative. Primarily focusing on two Principal Investigators, we draw data from participant interviews, journal entries, and project observations over fourteen months. One project is centered at an urban watercress farm in Hawai’i and one is centered on the Los Angeles River in California. We use theories of symbolic boundaries and methods of comparative case study to identify leadership practices that facilitate successful place-based, community-based research involving scientists and members of historically excluded communities. We find boundary-spanning leadership to include a critical awareness of scientific history, efforts to center community at all phases of the work, and trust-building practices that strengthen confidence in the team. This work carries theoretical implications for geoscientists working across politicized differences, practical implications for leadership development, and structural implications for the incentives and design of community-based scholarship. We hypothesize community-based science could increase the perceived social and cultural relevance of geosciences, and thereby broaden participation and reduce inequities in who contributes knowledge to these fields.
DOI: 10.6084/m9.figshare.21207427.v1
title: Boundary spanning leadership in community-centered geoscience research

description: Community-based research models hold potential to change who conducts geoscience research, its relevance to the public, and how researchers may begin to address historical injustices. However, this potential is contingent on such projects being led in ways that meaningfully and equitably bridge the worlds of scientists and community stakeholders. Here, we present an in-depth, comparative case study of leadership in two place-based, community-based projects funded through an NSF initiative. Primarily focusing on two Principal Investigators, we draw data from participant interviews, journal entries, and project observations over fourteen months. One project is centered at an urban watercress farm in Hawai’i and one is centered on the Los Angeles River in California. We use theories of symbolic boundaries and methods of comparative case study to identify leadership practices that facilitate successful place-based, community-based research involving scientists and members of historically excluded communities. We find boundary-spanning leadership to include a critical awareness of scientific history, efforts to center community at all phases of the work, and trust-building practices that strengthen confidence in the team. This work carries theoretical implications for geoscientists working across politicized differences, practical implications for leadership development, and structural implications for the incentives and design of community-based scholarship. We hypothesize community-based science could increase the perceived social and cultural relevance of geosciences, and thereby broaden participation and reduce inequities in who contributes knowledge to these fields.
DOI: 10.6084/m9.figshare.22289610
title: Comparison of in-person and virtual Grand Canyon undergraduate field trip learning outcomes

description: Field learning is fundamental in geoscience, but cost, accessibility, and other constraints limit equal access to these experiences. As technological advances afford ever more immersive and student-centered virtual field experiences, they are likely to have a growing role across geoscience education. They also serve as an important tool for providing high-quality online instruction, whether to fully online degree students, students in hybrid in-person/remote programs, or students experiencing disruptions to in-person learning, such as during the COVID-19 pandemic. This mixed-methods study compared learning outcomes of an in-person (ipFT) and a virtual (iVFT) geoscience field trip to Grand Canyon National Park, each of which highlighted the Great Unconformity. Participants included introductory and advanced geology students. In the ipFT, students collectively explored the Canyon through the interpretive Trail of Time along the Canyon rim, guided by the course instructor. In the iVFT, students individually explored the Canyon and studied its geology at river level. 360° spherical images anchor the iVFTs and serve as a framework for programmed overlays that enable active learning and allow for adaptive feedback. We assessed cognitive and affective outcomes in both trips using common measures. Regression analysis showed the iVFT to be associated with significantly greater learning gains. The ipFT students had significantly higher positive affect scores pre-trip, reflecting their excitement for the trip. Overall, our results provide clear evidence that high-quality iVFTs can lead to better learning gains than ipFTs. Although field trips are employed for more than just content learning, this finding may encourage greater use of iVFTs in coursework.
DOI: 10.6084/m9.figshare.22289610.v1
title: Comparison of in-person and virtual Grand Canyon undergraduate field trip learning outcomes

description: Field learning is fundamental in geoscience, but cost, accessibility, and other constraints limit equal access to these experiences. As technological advances afford ever more immersive and student-centered virtual field experiences, they are likely to have a growing role across geoscience education. They also serve as an important tool for providing high-quality online instruction, whether to fully online degree students, students in hybrid in-person/remote programs, or students experiencing disruptions to in-person learning, such as during the COVID-19 pandemic. This mixed-methods study compared learning outcomes of an in-person (ipFT) and a virtual (iVFT) geoscience field trip to Grand Canyon National Park, each of which highlighted the Great Unconformity. Participants included introductory and advanced geology students. In the ipFT, students collectively explored the Canyon through the interpretive Trail of Time along the Canyon rim, guided by the course instructor. In the iVFT, students individually explored the Canyon and studied its geology at river level. 360° spherical images anchor the iVFTs and serve as a framework for programmed overlays that enable active learning and allow for adaptive feedback. We assessed cognitive and affective outcomes in both trips using common measures. Regression analysis showed the iVFT to be associated with significantly greater learning gains. The ipFT students had significantly higher positive affect scores pre-trip, reflecting their excitement for the trip. Overall, our results provide clear evidence that high-quality iVFTs can lead to better learning gains than ipFTs. Although field trips are employed for more than just content learning, this finding may encourage greater use of iVFTs in coursework.
DOI: 10.15468/dl.hnvd8u
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrovernix glandulosus (Less.) Koek."
 ]
}

 The dataset includes 217 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059957-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymkcvk
title: Occurrence Download

description: A dataset containing 16713 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Senna siamea (Lam.) H.S.Irwin & Barneby"
 ]
}

 The dataset includes 16713 records from 349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059956-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqqq78
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Olax zeylanica L."
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059958-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s42k8y
title: Occurrence Download

description: A dataset containing 28228442 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 28228442 records from 4553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059939-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22619723.v1
title: Additional file 13 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 13: Table S12. PCR primers used in this study.
DOI: 10.6084/m9.figshare.6891083
title: Additional file 1 of Imbalance learning for the prediction of N6-Methylation sites in mRNAs

description: Data set of human mature mRNA N6-Methylation. Training and testing data used in this paper is accessible in this file. For each sample, the transcript id, site position, transcript length and flanking sequence with a size of 26 nts are given. (XLSX 15155 kb)
DOI: 10.6084/m9.figshare.22619705.v1
title: Additional file 7 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 7: Table S6. Gene list and expression levels of circadianly expressed genes.
DOI: 10.6084/m9.figshare.20521334.v1
title: Additional file 8 of Comprehensive analysis of differentially expressed profiles of mRNA, lncRNA, and miRNA of Yili geese ovary at different egg-laying stages

description: Additional file 8: Table S8-1. Differential lncRNAs involved in the reproductive process of Yili goose.
DOI: 10.6084/m9.figshare.6891095.v1
title: Additional file 2: of RNA binding proteins co-localize with small tau inclusions in tauopathy

description: Table S1. Mass spectometry data. This table provides quantification of the proteins identified by mass spectrometry, and shows # peptides identified, fold changes and P-values for each protein identified. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.22619693.v1
title: Additional file 4 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 4: Table S3. Pseudo-time analysis of scRNA-seq in C1, C2 and C3 cell clusters.
DOI: 10.6084/m9.figshare.22619711
title: Additional file 9 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 9: Table S8. List of DARs and DAGs for scATAC-seq data.
DOI: 10.6084/m9.figshare.12133962.v1
title: Additional file 6 of Genomic characterization of an emerging Enterobacteriaceae species: the first case of co-infection with a typical pathogen in a human patient

description: Additional file 6: Table S4. The ARGs and virulence genes annotation results of AF18
DOI: 10.6084/m9.figshare.22619684
title: Additional file 2 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 2: Table S1. Statistics of all sequencing data used in this study.
DOI: 10.6084/m9.figshare.22619690
title: Additional file 3 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 3: Table S2. Gene list and expression levels of cell marker genes, the expression levels of DEGs in scRNA-seq, and the highly expressed genes in C3.
DOI: 10.6084/m9.figshare.22619723
title: Additional file 13 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 13: Table S12. PCR primers used in this study.
DOI: 10.6084/m9.figshare.22619720
title: Additional file 12 of Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

description: Additional file 12: Table S11. List of TCP motif and TCP-like motif target genes with the highest C3 expression.
DOI: 10.6084/m9.figshare.16851339.v1
title: Additional file 2 of The mitochondrial genomes of Tortricidae: nucleotide composition, gene variation and phylogenetic performance

description: Additional file 2: Table S2. Annotation and comparison of mitochondrial genome organizations of 13 mitogenomes sequenced in this study.
DOI: 10.6084/m9.figshare.12133974
title: Additional file 2 of Construction of a semi-automatic ICD-10 coding system

description: Additional file 2.
DOI: 10.6084/m9.figshare.12133974.v1
title: Additional file 2 of Construction of a semi-automatic ICD-10 coding system

description: Additional file 2.
DOI: 10.6084/m9.figshare.12133986
title: Additional file 1 of Equity and efficiency of maternal and child health resources allocation in Hunan Province, China

description: Additional file 1. The distribution of maternal and child health care resources in Hunan in 2017. Table. The general information on maternal and child health care resources distribution in Hunan in 2017.
DOI: 10.6084/m9.figshare.20522679.v1
title: Additional file 1 of NAPSB as a predictive marker for prognosis and therapy associated with an immuno-hot tumor microenvironment in hepatocellular carcinoma

description: Additional file 1. Supplementary Tables 1-4 and 7-15. Table S1. 50 immunomodulators. Table S2. Effector genes of TIICs. Table S3. Gene sets of therapeutic signatures. Table S4. Gene sets of cell death signatures. Table S7. Co-Expressed genes of NAPSB. Table S8. Upregulated expressed genes between NAPSB subgroups. Table S9. Common genes of co-expressed genes and upregulated DEGs. Table S10. Functional annotation and pathway analysis for common genes (Gene Ontology-Biological process). Table S11. Functional annotation and pathway analysis for common genes (KEGG pathways).
DOI: 10.6084/m9.figshare.12134100
title: Additional file 7 of Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data

description: Additional file 7 : Table S4 Information of the FAD family in Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.12134100.v1
title: Additional file 7 of Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data

description: Additional file 7 : Table S4 Information of the FAD family in Arabidopsis thaliana.
DOI: 10.6084/m9.figshare.12134103.v1
title: Additional file 8 of Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data

description: Additional file 8. Annotation genes sequences of transcriptome data.
DOI: 10.6084/m9.figshare.12134088.v1
title: Additional file 5 of Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data

description: Additional file 5 : Table S3 Expression of genes related to unsaturated fatty acid biosynthesis and arachidonic acid metabolism.
DOI: 10.6084/m9.figshare.12134103
title: Additional file 8 of Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data

description: Additional file 8. Annotation genes sequences of transcriptome data.
DOI: 10.6084/m9.figshare.12134076.v1
title: Additional file 3 of Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data

description: Additional file 3 : Table S2 Expression data of the key metabolic pathways genes at kernel development stages.
DOI: 10.6084/m9.figshare.22619837
title: Additional file 2 of Splicing complexity as a pivotal feature of alternative exons in mammalian species

description: Additional file 2.
DOI: 10.6084/m9.figshare.20522718
title: Additional file 3 of Phenotypic screen and transcriptomics approach complement each other in functional genomics of defensive stink gland physiology

description: Additional file 3: Supplementary Table S3. GC-MS analysis of stink gland volatile compounds of iBeetle-confirmed genes in knock-down beetles (separate, sortable Excel file). Analyzed substances were 2-Methyl-1,4-benzoquinone (MBQ) and 2-Ethyl-1,4-benzoquinone (EBQ), as well as 1-Pentadecene (1-C15) and 1-Heptadecene (1-C17). Bold iB numbers indicate that the originally annotated phenotype in iBeetle-Base was confirmed in the re-screen. Italics indicate that the gene expression in glands was twofold higher (FC ≥ 2) than in control tissues as identified in a previous study [28]. Reference to the morphological gland phenotype is given in column C. Column T indicates the color code for extraction of the data to generate Figure 3.
DOI: 10.6084/m9.figshare.20522718.v1
title: Additional file 3 of Phenotypic screen and transcriptomics approach complement each other in functional genomics of defensive stink gland physiology

description: Additional file 3: Supplementary Table S3. GC-MS analysis of stink gland volatile compounds of iBeetle-confirmed genes in knock-down beetles (separate, sortable Excel file). Analyzed substances were 2-Methyl-1,4-benzoquinone (MBQ) and 2-Ethyl-1,4-benzoquinone (EBQ), as well as 1-Pentadecene (1-C15) and 1-Heptadecene (1-C17). Bold iB numbers indicate that the originally annotated phenotype in iBeetle-Base was confirmed in the re-screen. Italics indicate that the gene expression in glands was twofold higher (FC ≥ 2) than in control tissues as identified in a previous study [28]. Reference to the morphological gland phenotype is given in column C. Column T indicates the color code for extraction of the data to generate Figure 3.
DOI: 10.6084/m9.figshare.20522715
title: Additional file 2 of Phenotypic screen and transcriptomics approach complement each other in functional genomics of defensive stink gland physiology

description: Additional file 2: Supplementary Table S2. Gene ontology of iBeetle-identified genes affecting stink function (separate, sortable Excel file). BLASTp against the Tribolium genome assembly Tcas5.2 [50] was used to identified the respective beetle genes and tBLASTn was used against the D. melanogaster genome and the entire NCBI nucleotide collection database. In addition, gene ontology analyses were carried out using ShinyGO [44], BlastKOALA [45], and eggNOG-mapper [46]. In ShinyGO, n.a. specifies that one gene (iB-02716) was not analyzed, whereas * indicates the four genes (iB-02516, iB-05119, iB-09043, iB-09239) involved in lysosome function. In BlastKOALA, 24 genes were not analyzed, while in eggNOG-mapper only for four genes (iB-03552, iB-04420, iB-07361, iB-08861) no orthologs were identified. In eggNOG, for one gene (iB_04702) the closest seed ortholog was from the African clawed frog (Xenopus laevis)**, while for one gene (iB_08184) it was from the purple sea urchin (Stronglylocentrotus purpuratus)***. For all other genes, T.castaneum genes were used as seed orthologs by eggNOGG, with 13 genes identified by former Tc-numbers (indicated in column C in addition).
DOI: 10.6084/m9.figshare.6891299
title: Additional file 2: of Posttranscriptional upregulation of HER3 by HER2 mRNA induces trastuzumab resistance in breast cancer

description: Table S2. Gene-set enrichment analysis in T47D cells transfected with HER2â 3â UTR or control vector. (XLSX 37 kb)