cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14706273.v1
title: Supplementary Material for: Development and Validation of a Comprehensive Genomics Knowledge Scale

description: <b><i>Background:</i></b> Genomic testing is increasingly employed in clinical, research, educational, and commercial contexts. Genomic literacy is a prerequisite for the effective application of genomic testing, creating a corresponding need for validated tools to assess genomics knowledge. We sought to develop a reliable measure of genomics knowledge that incorporates modern genomic technologies and is informative for individuals with diverse backgrounds, including those with clinical/life sciences training. <b><i>Methods:</i></b> We developed the GKnowM Genomics Knowledge Scale to assess the knowledge needed to make an informed decision for genomic testing, appropriately apply genomic technologies and participate in civic decision-making. We administered the 30-item draft measure to a calibration cohort (<i>n</i> = 1,234) and subsequent participants to create a combined validation cohort (<i>n</i> = 2,405). We performed a multistage psychometric calibration and validation using classical test theory and item response theory (IRT) and conducted a post-hoc simulation study to evaluate the suitability of a computerized adaptive testing (CAT) implementation. <b><i>Results:</i></b> Based on exploratory factor analysis, we removed 4 of the 30 draft items. The resulting 26-item GKnowM measure has a single dominant factor. The scale internal consistency is α = 0.85, and the IRT 3-PL model demonstrated good overall and item fit. Validity is demonstrated with significant correlation (<i>r =</i> 0.61) with an existing genomics knowledge measure and significantly higher scores for individuals with adequate health literacy and healthcare providers (HCPs), including HCPs who work with genomic testing. The item bank is well suited to CAT, achieving high accuracy (<i>r</i> = 0.97 with the full measure) while administering a mean of 13.5 items. <b><i>Conclusion:</i></b> GKnowM is an updated, broadly relevant, rigorously validated 26-item measure for assessing genomics knowledge that we anticipate will be useful for assessing population genomic literacy and evaluating the effectiveness of genomics educational interventions.
DOI: 10.6084/m9.figshare.24132036.v1
title: Supplementary Material for: Diversity and evolution of highly repetitive DNA sequences constituting chromosome-site specific heterochromatin in two Gerbillinae species

description: Constitutive heterochromatin, consisting of repetitive sequences, diverges very rapidly; therefore, its nucleotide sequences and chromosomal distributions are often largely different, even between closely related species. The chromosome C-banding patterns of two Gerbillinae species, Meriones unguiculatus and Gerbillus perpallidus, vary greatly, even though they belong to the same subfamily. To understand the evolution of C-positive heterochromatin in these species, we isolated highly repetitive sequences, determined their nucleotide sequences, and characterized them using chromosomal and filter hybridization. We obtained a centromeric repeat (MUN-HaeIII) and a chromosome 13-specific repeat (MUN-EcoRI) from M. unguiculatus. We also isolated a centromeric/pericentromeric repeat (GPE-MBD) and an interspersed-type repeat that was predominantly amplified in the X and Y chromosomes (GPE-EcoRI) from G. perpallidus. GPE-MBD was found to contain a 17-bp motif that is essential for binding to the centromere-associated protein CENP-B. This indicates that it may play a role in the formation of a specified structure and/or function of centromeres. The nucleotide sequences of the three sequence families, except GPE-EcoRI, were conserved only in Gerbillinae. GPE-EcoRI was derived from the LINE-1 retrotransposon and showed sequence homology throughout Muridae and Cricetidae species, indicating that the repeat sequence occurred at least in the common ancestor of Muridae and Cricetidae. Due to a lack of assembly data of highly repetitive sequences constituting heterochromatin in whole-genome sequences of vertebrate species published to date, the knowledge obtained in this study provides useful information for a deep understanding of the evolution of repetitive sequences in not only rodents but also in mammals.
DOI: 10.6084/m9.figshare.6592475.v1
title: Theoretical ribosomal protein mass fingerprint of Klebsiella pneumoniae

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Klebsiella pneumoniae</i>.<br><br>
DOI: 10.17632/fx8t9z4496
title: Hourly Global Ionospheric TEC Maps

description: Near real-time modeling of global ionospheric total electron content by using the hourly IGS data. FTP: ftp://pub.ionosphere.cn/hourly/
DOI: 10.17632/kk4hcwmvzh
title: Unprocessing Western Blots and Raw Counting Data

description: Unprocessing Western Blots and Raw Counting Data
DOI: 10.17632/bfpzxc5rpp
title: Renewable Energy Patent and Trade Data

description: This dataset contains renewable energy patent and trade data. This is the working dataset and the mother datasets can be found upon request. The code files contain the regression file and the dataset construction file. The dataset construction file is only appropriate for the mother datasets which are not uploaded here. A user is requested to contact the author for accessing the mother datasets. 

Version 2: Bilateral Trade Data sourced from UN COMTRADE is uploaded.
DOI: 10.17632/vbpdtyxbtn
title: Data for: Antiparallel dimer structure of CELSR cadherin in solution revealed by high-speed atomic force microscopy

description: The data set includes raw data of image files of human CELSR2 cadherin ectodomains acquired by high-speed atomic force microscope in solution, image files of bead aggregation assay, and numerical data analyzed from these images.
DOI: 10.17632/33wpsfszc7
title: Data for: Irradiation damage in xenon-irradiated α-Al2O3 before and after annealing

description: Figure 1 to Figure 7.
DOI: 10.17632/whf7234whj
title: Intrigues In Public Debt in SubSaharan Africa Data

description: Target Population
This study targeted to collect data from 48 sub-Saharan Africa countries. Data ranges from the year 1990 to 2022. However, 4 countries were excluded
from the study owing to inadequacy of data, leaving 44 countries with a total of 1,452
observations.
Sampling Technique
This study considers 1,452 observation as few and therefore adopts to embrace a census
method approach in analyzing all the available observations.
Data Sources
This study relied upon already collected, processed and stored data by various
organizations such as the World Bank and the International Monetary fund
DOI: 10.6084/m9.figshare.20510865.v1
title: Liver_clock

description: This repository contains the data to reproduce the result of the manuscript <em>Rejuvenation of naturally aged mice by mesenchymal stem cells SHED treatment with affecting ribosomal and mitochondrial proteins</em>
DOI: 10.6084/m9.figshare.28555403.v1
title: README.txt

description: Description of associated datafiles
DOI: 10.17632/nz3vy3z3zc
title: Assessment of the Effect of Chemical Chain Length on Adverse Outcomes

description: Analysis of the effect of chain length on differential gene expression
DOI: 10.17632/5wfvwsb3x3
title: Evaluation and comparison of traditional plaster and fiber-glass casts with 3D printed PLA and PLA-CaCO3 composite splints for bone fracture management

description: Dataset for the publication entitled "Evaluation and comparison of traditional plaster and fiber-glass casts with 3D printed PLA and PLA-CaCO3 composite splints for bone fracture management".
If cited, please, cite the publication as well.
DOI: 10.17632/ztyrfp35tb
title: Data for: A modified yield function for modeling of the evolving yielding behavior and micro-mechanism in biaxial deformation of sheet metals
DOI: 10.17632/6fhp27h9xz
title: Data for Non-Neotissue Constituents as Underestimated Confounders in the Assessment of Tissue Engineered Constructs by Near-Infrared Spectroscopy

description: Datasets, orange workflow file and R scripts necessary to replicate the results of the study "Non-Neotissue Constituents as Underestimated Confounders in the Assessment of Tissue Engineered Constructs by Near-Infrared Spectroscopy".
S1-Samples.csv: The details of the samples used in the study.
S2-Spectra.csv: The labeled spectra used for data analysis.
S3-OrangeWorkFlow.ows: The orange workflow file used for primary machine learning as mentioned in section 2.3 in the study. Requires the software Quasar or Orange 3.33 with the Quasar add-on (Bioinformatics Lab, University of Ljubljana, Slovenia). Upload the S2-Spectra.csv file in the "file" widget for the analysis to start (may require manual intiation in some widgets too).
S4.Orangeworkflows.pdf: Detailed overview of the S3-OrangeWorkFlow.ows.
S5-Propensity Score Matching.zip: Files used for Propensity Score Matching mentioned in section 2.3.2
S6-matchedmatrix.csv: The matched pair from Propensity Score Matching produced from "S5-Propensity Score Matching.zip" and used for controlling the models in "S3-OrangeWorkFlow.ows" and in "S7-MCCVofSVM.Rmd" as described in section 2.3.2.
S7-MCCVofSVM.Rmd: Used for Monte Carlo cross-validation mentioned in section 2.3.2 and produce figure 4
S8-ConfoundersPredictionPerformances.xlsx: The machine learning cross-validation results for models classifying the constructs according to the non-neotissue constituents. Table 3 of the study presents summary of selected metrics form these spreadsheet.
S9-ControlledVsUncontrolledPerformances.xlsx: The comprehensive results showing all metrics and the statistical analysis results of the controlled vs the uncontrolled models mentioned in section 2.3.2 and described in section 3.2 
S10- Statistics: Files and results of the statistical analysis described in section 3.2 and presented in Table 4
DOI: 10.17632/skm88ynyhv
title: An elbow exoskeleton for haptic feedback made with a direct drive hobby motor

description: A direct-drive motor is one of the simplest mechanisms to cause a mechanical joint to move. Specifically, a brushless direct current (BLDC) motor with no gearing produces a low parasitic torque due to its backdrivability and low inertia, which is ideal for some applications such as wearable systems. While capable of operating with a higher power density than brushed motors, BLDC motors require accurate position feedback to be controlled via vector control at slow speeds. The MotorWare™ library from Texas Instruments (TI), which is designed to run with a C2000 microcontroller, is written to run BLDCs. However, the code was written to run the motor continuously with an incremental encoder and requires further engineering to be used at low speeds, for example, in an exoskeleton. In this paper, we provide custom code to modify the software provided by TI so that the motor can provide a controlled torque at low speeds, code to enable the microcontroller to communicate with a computer for high-level commands and data storage, and procedures to build the hardware for a simple arm exoskeleton that can provide haptic feedback to the wearer. The supplementary design files included are: 1) CAD_Files.zip, 2) CCS_codes.zip, 3) Frame_drawings.pdf, and 4) Processing_codes.zip.
DOI: 10.17632/4sff2xhzmh
title: Database for: Evidence based land-sea conservation in Chilean Patagonia

description: Appendix A. Supplementary Information for "Evidence based land-sea conservation in Chilean Patagonia". This document includes the supplementary text with the methodological approach of the compilation, analysis and synthesis of the evidence about the conservation of Chilean Patagonia applying a systematic mapping approach (including the five stages to reproduce the synthesis). Appendix B. Complete database of the 986 studies reviewed in this synthesis coded by: AU Authors TI Title SO Publication name DT Document Type (article, review, editorial, book chapter, letter, meeting abstract, technical report) PY Publication Year DE Authors’ Keywords ID Keywords associated by ISI database AB Abstract TC Times cited System Freshwater, terrestrial, marine, social and other Driver climate change, habitat change, pollution, overexploitation, invasive species (one per column) SC Subject category (See Fig. 2. Example: ecology, environmental sciences, plant studies, archaeology, anthropology among others) Conservation or Management Does the study try to solve conservation and/or management questions? Q1 Does the paper cover the Patagonia region o any area in the Chile’s Patagonia region? Q2 Does the paper consider research in any of the systems of Patagonia (freshwater, marine, terrestrial, and social)? Q3 (a) Does the paper consider drivers affecting ecosystems or conservation and management issues in Patagonia region? Q3 (b) Does the paper consider human-nature relationships, identity issues (indigenous) or human occupation patterns in Patagonia? Extra information Extra notes
DOI: 10.17632/d5rtny7p4y
title: Thermo-physical data for Co-Cr-W and Co-Cr-W-Si-Mn

description: Thermo-physical data for Co-Cr-W and Co-Cr-W-Si-Mn Authors: J.C.T. Cullen, S. Mehraban, D. Davies, J. Vallery, N.P. Lavery, S.G.R Brown Cobalt Chrome Tungsten (Co-Cr-W) ternary and micro-alloyed samples (Co-Cr-W-Si-Mn) were manufactured using a Rapid Alloy Prototyping methodology which combined ball milling, powder compaction and induction melting. Each composition selected was studied in three conditions; as-cast, annealed for 4 hrs at 1100°C and annealed for 14 days at 1100°C. The samples were analysed using XRD, Dilatometry, hardness, SEM/EDS and DSC forming a significant chapter of work from Dr Jonathan Cullen's PhD thesis. CONTENTS OF DATABASE The database contains all raw data from the measurements and all the microscopy of samples which have not been included in subsequent publications due to space limitation, copyright or data averaging. For example, the Coefficients of Thermal Expansion (CTE) obtained for individual compositions covered a temperature range from RT to 1100 Deg C, but typically plotted as average CTE values over temperature intervals of 50 deg C . The data in this database contains the complete raw data set. SAMPLE NUMBERS, COMPOSITION AND PHASES The sample numbers [1-53] are used throughout this database, for the compositions XX Co – YY Cr – ZZ W (always in weight percentage). Samples for the Co-Cr-W ternary are labelled and saved in folders called CCW, whereas samples microalloyed with Mn or Si are under folders labelled CCWSM. The CCW samples [1] - [53] are labelled as in excel file at top level folder (Co-Cr-W Summary of Chemistry Hardness and DSC data.xlsx). The CCWSM samples [1] - [12] are labelled as in excel file at the top level folder (Co-Cr-W-Si-Mn Chemistry CTE Hardness and Enthalpy.xlsx).
DOI: 10.17632/s7rhhb3w9v
title: Control Defense, Board Structure and Corporate Governance Efficiency under Dual-Class Share Structure——For China Concept Stocks in the US Stock Exchange Markets

description: The data set includes information on the core variables necessary to examine the relationship between control defense, board structure, and corporate governance efficiency. The study sample is primarily composed of China concept stock companies in the US stock exchange markets that are startup in type and homogeneous in culture from 2013 to 2022. Furthermore, it empirically investigates the intrinsic path of the founder control defense on the corporate governance efficiency with a panel data model, with board structure as the moderating role. Moreover, it reveals the roles of equity checks and balances and audit tenure in the governance mechanism of science-technology and innovation-oriented listed companies. The paper finds that: (i) In science-technology and innovation-oriented listed companies under dual-class share structure, the increase in founder control defense contributes to improving corporate governance efficiency. (ii) An increase in board size may reduce corporate governance efficiency, and CEO duality and an increment of the size of independent directors may enhance corporate governance efficiency. (iii) Board structure plays a moderating role in the impact of founder control defense on corporate governance efficiency. (iv) In science-technology and innovation-oriented listed companies, stronger equity control and long audit periods may weaken corporate governance mechanisms.
DOI: 10.17632/3jrpcrn5t6
title: Nutrient control of growth and metabolism through mTORC1 regulation of mRNA splicing Ogawa, et al.

description: Primary data for our Ogawa, et al. study on mTORC1 and mRNA splicing regulation during growth.
DOI: 10.25417/uic.26495884.v1
title: Cache2 Focus Group Discussion Transcripts AGYW and Community Males

description: Transcripts from qualitative study of AGYW and men regarding impact of COVID19 on sexual and reproductive health
DOI: 10.6084/m9.figshare.7392209.v1
title: All Interviews - Leximancer Data Visualisation

description: Concept mapping results and associated generated by Leximancer using all 50 interviews. This dataset comprised of concept mapping the results and associated figures by Leximancer using all 50 interviews is a component of a Doctor of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications of Body Worn Computers: An Ethnographic Study'. This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT) at the University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socio-ethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from trans-disciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agencies for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement. The full thesis can be accessed at https://ro.uow.edu.au/theses1/853 <br>
DOI: 10.17632/cjbczy723b
title: UV-Vis spectrophotometric determination of rare earth elements (REE) speciation at near-neutral to alkaline pH. Part II: hydrolysis of Er from 25 to 75 °C

description: Here, UV-Vis spectrophotometry experiments were conducted as a function of temperature between 35 and 75 ℃ to determine the hydrolysis of Er in near-neutral to alkaline solutions using mCP as an in situ pH color indicator. The experiments were conducted with Er concentrations from 0 to ~0.253 mmol/kg in low ionic strength solutions (≤ 0.001 mol/kg). The average OH− ligand number coordinated to Er3+ increases from 1.0 to 2.7 at 35 ℃ and from 1.5 to 3.2 at 75 ℃ over a pH range from 6.3 to 9.0. The measured speciation shows an increased predominance of Er(OH)30 over the Er(OH)2+ and Er(OH)2+ species with increased temperature. The logarithmic values of Er hydrolysis constants (log*βn◦, n =1 to 3) were derived for the reaction Er3+ + nH2O = Er(OH)n3-n + nH+ at each temperature of 35, 50, and 75 ℃: log*β1◦ of −7.02 ± 0.09, −6.19 ± 0.06, −5.43 ± 0.16; log*β2◦ of −14.39 ± 0.15, −13.98 ± 0.01, and −13.45 ± 0.24; log*β3◦ of −22.85 ± 0.15, −21.79 ± 0.14, and −20.32 ± 0.09. These equilibrium constants were fitted to a function to predict the hydrolysis constants of Er between 25 and 75 ℃, and show a systematic increase in the stability of REE hydroxyl complexes with higher ligand numbers with increased temperature.
DOI: 10.17632/xfwf2nkfg4
title: Differential Protein Abundance in THP-1 Macrophages Infected with Wild-Type and YopJC172A Yersinia pseudotuberculosis

description: This dataset contains mass spectrometry-based proteomic profiles of THP-1 macrophages infected with either wild-type Yersinia pseudotuberculosis or a catalytically inactive YopJC172A mutant. The study aims to identify differentially abundant host proteins in response to YopJ activity during infection. Samples were analyzed using Orbitrap Fusion mass spectrometry following SDS-PAGE and in-gel trypsin digestion. These data provide insights into YopJ-dependent modulation of host cell signaling pathways.
DOI: 10.17632/yz536nxyst
title: Genome size affects fitness in the eukaryotic alga Dunaliella tertiolecta
DOI: 10.6084/m9.figshare.13317116.v1
title: Stress, Dyadic Coping, and Marital Satisfaction of 118 Dual Earner Couples in Indonesia

description: Data in dataset was collected from 118 dual-earner couples in Indonesia, which took place June to December 2019 and was approved by the Committee on Research Ethics at Faculty of Psychology, Universitas Indonesia (No: 521/F.Psi.Komite Etik/PDP.04.00/2019). All measures were translated from English into Bahasa Indonesia by an Indonesian psychology lecturer who is fluent in both English and Bahasa Indonesia. Following this initial procedure, the translated versions were back-translated to English by other lecturer who is fluent in both languages. External stress was measured with the Multidimensional Stress Questionnaire for Couples (MSQ-C;Bodenmann et al., 2007); Marital satisfaction was measured with Couple Satisfaction Index (CSI;Funk & Rogge, 2007); DC was measured with the Dyadic Coping Inventory (DCI; Bodenmann, 2008; Randall et al., 2016), for the purpose of this study only we use 14 items that examines the following: perceived partner’s emotion and problem focused supportive DC; emotion and problem focused common DC; perceived partner’s stress communication. Average scores were calculated for further analysis.
DOI: 10.17632/63vhbkndns
title: The dataset for bibliometric analysis of economics and business research trends in Vietnam

description: All scientiﬁc publications of Vietnam were refined by Scopus to the “Economics, Econometrics and Finance” and “Business, Management and Accounting” categories.