cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1405848.10fu
title: SH1405848.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.mbpkxm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"BRA.13.165_2","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006208-260108223611665/datasets/export for details.
DOI: 10.15156/bio/sh1405850.10fu
title: SH1405850.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1405854.10fu
title: SH1405854.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13140/rg.2.2.11076.01929
title: Bordetella petrii strain AM14-MRL 16S ribosomal RNA gene, partial sequence
DOI: 10.25921/0yjd-9w95
title: NOAA/WDS Paleoclimatology - Farris fire data from Devil's Bathtub - IMPD USDB0001

description: Modern fire records and fire-scarred remnant material collected from logs, snags, and stumps were used to reconstruct and analyze fire history in the mixed-conifer and pine forest above 2300 m within the Rincon Mountain Wilderness of Saguaro National Monument, Arizona, United States. Cross-dating of the remnant material allowed dating of fire events to the calendar year. Estimates of seasonal occurrence were compiled for larger fires. It was determined that the fire regime was dominated by large scale (> 200 ha), early-season (May–July) surface fires. The mean fire interval over the Mica Mountain study area for the period 1657–1893 was 6.1 years with a range of 1–13 years for larger fires. The mean fire interval for the mixed-conifer forest type (1748–1886) was 9.9 years with a range of 3–19 years. Thirty-five major fire years between 1700 and 1900 were compared with a tree-ring reconstruction of the Palmer drought severity index (PDSI). Mean July PDSI for 2 years prior to fires was higher (wetter) than average, while mean fire year PDSI was near average. This 490-year record of fire occurrence demonstrates the value of high-resolution (annual and seasonal) tree-ring analyses for documenting and interpreting temporal and spatial patterns of past fire regimes.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usdb0001.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/usdb0001-noaa.txt
DOI: 10.25921/04h7-4493
title: NOAA/WDS Paleoclimatology - Castor and Round Lake, Washington Isotope and Charcoal Data over the past 1,200 Years

description: We present oxygen isotope and charcoal accumulation records from two lakes in eastern Washington that have sufficient temporal resolution to quantitatively compare with tree-ring records and meteorological data. Hydroclimate reconstructions from tree-rings and lake sediments show close correspondence after accounting for seasonal- to centennial- scale temporal sensitivities. Carbonate d18O measurements from Castor and Round lakes reveal that the Medieval Climate Anomaly (MCA) experienced wetter November-March conditions than the Little Ice Age (LIA). Charcoal records from Castor, Round, and nearby lakes show elevated fire activity during the LIA compared to the MCA. Increased multidecadal hydroclimate variability after 1250 CE is evident in proxy records throughout western North America. In the Upper Columbia River Basin, multidecadal wet periods during the LIA may have enhanced fuel loads that burned in subsequent dry periods. A notable decline in biomass burning occurred with Euro-American settlement in the late 19th century.
DOI: 10.25921/091x-tt90
title: NOAA/WDS Paleoclimatology - Iniguez fire data from Catalina Butterfly Peak Plot 09 - IMPD USCBP_09

description: Fire histories contribute important information to contemporary fire planning, however, our knowledge is not comprehensive geographically. We evaluated the influence of topography on fire history patterns in two contrasting landscapes within the Santa Catalina Mountains of southeastern Arizona. Multiple fire-scarred trees from randomly selected 2-ha plots were used to develop plot composite mean fire intervals (PCMFIs) within the Butterfly Peak (BP) and Rose Canyon (RC) landscapes. BP is dominated by steep, northerly aspects and presence of potential fire spread barriers (exposed rock bluffs and scree slopes). RC is dominated by more gentle and southerly aspects with relatively few fire barriers. Within each landscape, PCMFIs did not differ significantly between aspect classes from A.D. 1748 to 1910 (BP: p = 0.73 and RC: p = 0.57). Pooled PCMFIs in the gentler RC landscape were, however, significantly shorter (p < 0.001) than in the steeper BP landscape. The frequency of relatively widespread fires (i.e., number of fire years when ≥2 plots scarred) was similar between landscapes, but fires in the gentler RC landscape were significantly larger (p = 0.033). The higher frequency of large fires (i.e., fires that burned >75% of the landscape) in RC resulted in more area burned over time and shorter fire intervals at individual plots. Conversely, smaller fires in the dissected BP landscape resulted in less area burned and longer periods between fires at individual plots. The different topographies in the two landscapes likely result in different wind intensities, fuel moistures, and fuel/vegetation types—and consequently, different historical fire spread patterns. Our conclusion is that fire history patterns are not influenced primarily by stand-scale topography, but rather by the topographic characteristics of the broader, surrounding landscape.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/uscbp_09.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/uscbp_09-noaa.txt
DOI: 10.25921/0hmq-s372
title: NOAA/WDS Paleoclimatology - Hartl - Berchtesgaden, Bockstall - FASY - ITRDB DEU324

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/091r-4p17
title: NOAA/WDS Paleoclimatology - Hartl - Berchtesgaden, Predigtstuhl mitte - PCAB - ITRDB DEU336

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/0mx5-qt51
title: NOAA/WDS Paleoclimatology - Farris fire data from Mica Mountain - IMPD US03_17B

description: Fire scars are used widely to reconstruct historical fire regime parameters in forests around the world. Because fire scars provide incomplete records of past fire occurrence at discrete points in space, inferences must be made to reconstruct fire frequency and extent across landscapes using spatial networks of fire-scar samples. Assessing the relative accuracy of fire-scar fire history reconstructions has been hampered due to a lack of empirical comparisons with independent fire history data sources. We carried out such a comparison in a 2780-ha ponderosa pine forest on Mica Mountain in southern Arizona (USA) for the time period 1937–2000. Using documentary records of fire perimeter maps and ignition locations, we compared reconstructions of key spatial and temporal fire regime parameters developed from documentary fire maps and independently collected fire-scar data (n = 60 plots). We found that fire-scar data provided spatially representative and complete inventories of all major fire years (>100 ha) in the study area but failed to detect most small fires. There was a strong linear relationship between the percentage of samples recording fire scars in a given year (i.e., fire-scar synchrony) and total area burned for that year (y = 0.0003x + 0.0087, r2 = 0.96). There was also strong spatial coherence between cumulative fire frequency maps interpolated from fire-scar data and ground-mapped fire perimeters. Widely reported fire frequency summary statistics varied little between fire history data sets: fire-scar natural fire rotations (NFR) differed by <3 yr from documentary records (29.6 yr); mean fire return intervals (MFI) for large-fire years (i.e., ≥25% of study area burned) were identical between data sets (25.5 yr); fire-scar MFIs for all fire years differed by 1.2 yr from documentary records. The known seasonal timing of past fires based on documentary records was furthermore reconstructed accurately by observing intra-annual ring position of fire scars and using knowledge of tree-ring growth phenology in the Southwest. Our results demonstrate clearly that representative landscape-scale fire histories can be reconstructed accurately from spatially distributed fire-scar samples.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us03_17b.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us03_17b-noaa.txt
DOI: 10.25921/0dt6-qz32
title: NOAA/WDS Paleoclimatology - Hartl - Berchtesgaden, Mittereisalm - PCAB - ITRDB DEU353

description: Tree ring data from the International Tree Ring Data Bank and World Data Center for Paleoclimatology archives.  Most data sets include raw treering measurements (most are annual ring width, with some collections of earlywood or latewood width or wood density), plus chronologies (standardized growth indices for a site compiled from multiple treering samples). Reconstructions of climate variables are included with some of these data sets.  Each data type is stored in a separate data file; the data type is coded into the file name. For details please see: http://www.ncdc.noaa.gov/paleo/treeinfo.htmll
DOI: 10.25921/07gj-5932
title: NOAA/WDS Paleoclimatology - Reconstructed Warm Season Temperatures for Nome, Seward Peninsula, Alaska from 1389-2001 CE

description: Understanding of past climate variability in the Bering Strait region and adjacent land areas is limited by a paucity of long instrumental and paleoclimatic records. Here we describe a reconstruction of May– August temperatures for Nome, Seward Peninsula, Alaska based on maximum latewood density data which considerably extends the available climatic information. The reconstruction shows warm conditions in the late 1600s and middle-20th century and cooler conditions in the 1800s. The summer of 1783, coinciding with the Laki, Iceland volcanic event, is among the coldest in the reconstruction. Statistically significant relationships with the North Pacific Index and Bering-Chukchi sea surface temperatures indicate that the Seward tree-ring data are potentially useful as long-term indices of atmosphere-ocean variability in the region.
description: Reconstruction based on maximum latewood density of White spruce (Picea glauca). The reconstruction was truncated at 1970 in Figure 3 of the publication.
DOI: 10.13140/rg.2.2.12016.46088
title: Human herpesvirus 5 strain DB, complete genome (GenBank: KT959235.1)
DOI: 10.13140/rg.2.2.15637.32487
title: sliding on rotating BIG INERTIA
DOI: 10.13140/rg.2.2.36399.12968
title: Africa: raising the profile of obesity, heart disease and diabetes. Guardian Interview with Ama de-Graft Aikins, April 2013
DOI: 10.25921/0h83-zh09
title: NOAA/WDS Paleoclimatology - Farris fire data from Mica Mountain - IMPD US02_009

description: Fire scars are used widely to reconstruct historical fire regime parameters in forests around the world. Because fire scars provide incomplete records of past fire occurrence at discrete points in space, inferences must be made to reconstruct fire frequency and extent across landscapes using spatial networks of fire-scar samples. Assessing the relative accuracy of fire-scar fire history reconstructions has been hampered due to a lack of empirical comparisons with independent fire history data sources. We carried out such a comparison in a 2780-ha ponderosa pine forest on Mica Mountain in southern Arizona (USA) for the time period 1937–2000. Using documentary records of fire perimeter maps and ignition locations, we compared reconstructions of key spatial and temporal fire regime parameters developed from documentary fire maps and independently collected fire-scar data (n = 60 plots). We found that fire-scar data provided spatially representative and complete inventories of all major fire years (>100 ha) in the study area but failed to detect most small fires. There was a strong linear relationship between the percentage of samples recording fire scars in a given year (i.e., fire-scar synchrony) and total area burned for that year (y = 0.0003x + 0.0087, r2 = 0.96). There was also strong spatial coherence between cumulative fire frequency maps interpolated from fire-scar data and ground-mapped fire perimeters. Widely reported fire frequency summary statistics varied little between fire history data sets: fire-scar natural fire rotations (NFR) differed by <3 yr from documentary records (29.6 yr); mean fire return intervals (MFI) for large-fire years (i.e., ≥25% of study area burned) were identical between data sets (25.5 yr); fire-scar MFIs for all fire years differed by 1.2 yr from documentary records. The known seasonal timing of past fires based on documentary records was furthermore reconstructed accurately by observing intra-annual ring position of fire scars and using knowledge of tree-ring growth phenology in the Southwest. Our results demonstrate clearly that representative landscape-scale fire histories can be reconstructed accurately from spatially distributed fire-scar samples.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us02_009.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us02_009-noaa.txt
DOI: 10.25921/06gs-2v23
title: NOAA/WDS Paleoclimatology - Farris fire data from Mica Mountain - IMPD US02_014

description: Fire scars are used widely to reconstruct historical fire regime parameters in forests around the world. Because fire scars provide incomplete records of past fire occurrence at discrete points in space, inferences must be made to reconstruct fire frequency and extent across landscapes using spatial networks of fire-scar samples. Assessing the relative accuracy of fire-scar fire history reconstructions has been hampered due to a lack of empirical comparisons with independent fire history data sources. We carried out such a comparison in a 2780-ha ponderosa pine forest on Mica Mountain in southern Arizona (USA) for the time period 1937–2000. Using documentary records of fire perimeter maps and ignition locations, we compared reconstructions of key spatial and temporal fire regime parameters developed from documentary fire maps and independently collected fire-scar data (n = 60 plots). We found that fire-scar data provided spatially representative and complete inventories of all major fire years (>100 ha) in the study area but failed to detect most small fires. There was a strong linear relationship between the percentage of samples recording fire scars in a given year (i.e., fire-scar synchrony) and total area burned for that year (y = 0.0003x + 0.0087, r2 = 0.96). There was also strong spatial coherence between cumulative fire frequency maps interpolated from fire-scar data and ground-mapped fire perimeters. Widely reported fire frequency summary statistics varied little between fire history data sets: fire-scar natural fire rotations (NFR) differed by <3 yr from documentary records (29.6 yr); mean fire return intervals (MFI) for large-fire years (i.e., ≥25% of study area burned) were identical between data sets (25.5 yr); fire-scar MFIs for all fire years differed by 1.2 yr from documentary records. The known seasonal timing of past fires based on documentary records was furthermore reconstructed accurately by observing intra-annual ring position of fire scars and using knowledge of tree-ring growth phenology in the Southwest. Our results demonstrate clearly that representative landscape-scale fire histories can be reconstructed accurately from spatially distributed fire-scar samples.
description: 
This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.

Sample Storage Location: Laboratory of Tree-Ring, University of Arizona
Dating Method: Dated
Related ITRDB_Chronology: Not Applicable

Fire scar data from this site are available in FHX2 format at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us02_014.fhx
along with associated metadata at:
  https://www.ncei.noaa.gov/pub/data/paleo/firehistory/firescar/northamerica/us02_014-noaa.txt