cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w7y7j7
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((102.65155 3.08954,127.64395 3.08954,127.64395 30.63337,102.65155 30.63337,102.65155 3.08954))",
 "TaxonKey is Gardineroseris Scheer & Pillai, 1974"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011870-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14011482
title: Numerical Decomposition of the Governing Equation for Lagrangian Residual Velocity under Nonlinear Eddy Viscosity and Stratification
DOI: 10.5281/zenodo.14011512
title: Numerical Decomposition of the Governing Equation for Lagrangian Residual Velocity under Nonlinear Eddy Viscosity and Stratification
DOI: 10.6084/m9.figshare.27330420
title: dataset.zip

description: 1111111111111111111
DOI: 10.6084/m9.figshare.27330420.v1
title: dataset.zip

description: 1111111111111111111
DOI: 10.15468/dl.n5ae28
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Living Specimen, Occurrence evidence)",
 "Country is South Africa",
 "Geometry POLYGON((29.02527 -24.21886,28.72698 -24.1127,28.61481 -24.42841,28.71914 -24.56045,28.96068 -24.62676,29.13641 -24.68172,29.43207 -24.54214,29.35974 -24.35216,29.27535 -24.17449,29.15908 -24.19546,29.04524 -24.21823,29.02527 -24.21886))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1968-2024"
 ]
}

 The dataset includes 44 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011872-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qswxxn
title: Occurrence Download

description: A dataset containing 77591 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is eDNA from water column to characterise fish and invertebrate communities from 30 sites in the Belgian Part of the North Sea -12S"
 ]
}

 The dataset includes 77591 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011871-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5285/33a2b804-9631-4b58-801a-32d1b14c697e
title: P-wave velocity and attenuation (1/Q) data of ice-bearing sand pack during melting measured using an acoustic pulse tube under 2.5 MPa effective pressure

description: The data comprise P-wave velocity and attenuation (1/Q) measurements of ice-bearing sand packs across ice saturation levels during melting, from frozen to fully melted conditions. Using an acoustic pulse tube, measurements were recorded in the sonic frequency range (1-20 kHz, centred at 10 kHz) under 2.5 MPa effective pressure with atmospheric pore pressure. Data were collected in the Pulse Tube Laboratories at the National Oceanography Centre (NOC), Southampton, between March and July 2023, funded by the Natural Environment Research Council (NERC Grant NE/J020753/1), and primarily collected and analysed by Hanif Sutiyoso (University of Southampton). The experiment aimed to fill gaps in sonic frequency measurements of ice-bearing sediment/permafrost, particularly during melting/thawing, providing a spectrum of ice/water saturation rather than a single value. This dataset is valuable for researchers analysing thawing/melting permafrost, and is directly comparable to sonic well-logging field data due to its frequency range, and potential for monitoring application. The work regarding this dataset can be found at: https://doi.org/10.22541/essoar.172854543.39791425/v1.
The method involved measuring the time series of signal amplitude from two ice-bearing sand samples inside a 4.5 m water-filled acoustic pulse tube, which allows plane wave propagation in the sediment-jacketed samples. Time-domain data were transformed into the frequency domain using the Fast Fourier Transform (FFT) and deconvolved with the chirp source signal to obtain the impulse response. Nonlinear inversion was used to minimize an objective function derived from initial time-domain estimates, determining the sample's complex velocity and attenuation (1/Q).
DOI: 10.25592/uhhfdm.15932
title: Root dynamics in salt marshes

description: Raw data of minirhizotron root study
DOI: 10.25592/uhhfdm.15931
title: Root dynamics in salt marshes

description: Raw data of minirhizotron root study
DOI: 10.21227/nn8b-4g04
title: dataset of the sensor

description: The dataset contains performance data of test sensors and pulse test data. The pressure sensitivity of the CCFPI sensor is ~0.612 nm/N. Based on the special nonlinear property of the circular structure, accurate pulse waveforms can be acquired for blood pressure prediction. By constructing a deep learning model, the blood pressure could be directly retrieved based on the pulse waveforms measured by CFPI pressure sensor. As a result, the measurement errors of SBP and DBP were -0.122 ± 2.781 mmHg and 0.051 ± 1.711 mmHg, respectively.
DOI: 10.25592/uhhfdm.16140
title: Repository/Dataset - CdSe-Dot/CdS-Rod/PbS-Dot Nanocrystals by Partial Cation Exchange Reaction

description: Dataset to the publication V. Mittag et al. <em>Chem. Mater.</em><strong> XXXX</strong>, XXX-XXX (https://doi.org/10.1021/acs.chemmater.4c02553) with the title "CdSe-Dot/CdS-Rod/PbS-Dot Nanocrystals by Partial Cation Exchange Reaction"
description: {"references": ["V. Mittag et al. Chem. Mater. XXXX, XXX-XXX (https://doi.org/10.1021/acs.chemmater.4c02553)"]}
DOI: 10.25592/uhhfdm.16139
title: Repository/Dataset - CdSe-Dot/CdS-Rod/PbS-Dot Nanocrystals by Partial Cation Exchange Reaction

description: Dataset to the publication V. Mittag et al. <em>Chem. Mater.</em><strong> XXXX</strong>, XXX-XXX (https://doi.org/10.1021/acs.chemmater.4c02553) with the title "CdSe-Dot/CdS-Rod/PbS-Dot Nanocrystals by Partial Cation Exchange Reaction"
description: {"references": ["V. Mittag et al. Chem. Mater. XXXX, XXX-XXX (https://doi.org/10.1021/acs.chemmater.4c02553)"]}
DOI: 10.15468/dl.b4g7x2
title: Occurrence Download

description: A dataset containing 3261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen)",
 "CoordinateUncertaintyInMeters is less than or equal to 10000.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Asplenium septentrionale (L.) Hoffm."
 ]
}

 The dataset includes 3261 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011873-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7287f
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((103.79924 3.43427,132.35614 3.43427,132.35614 30.46737,103.79924 30.46737,103.79924 3.43427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Leptoseris explanata Yabe & Sugiyama, 1941"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011874-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27330468
title: Wind Speed Observations from an Ocean Buoy

description: The dataset involves a time-series wind speed data (5-20 September, 2022). The wind speed measurements were taken at a height of 10 m above the sea surface.
DOI: 10.6084/m9.figshare.27330468.v1
title: Wind Speed Observations from an Ocean Buoy

description: The dataset involves a time-series wind speed data (5-20 September, 2022). The wind speed measurements were taken at a height of 10 m above the sea surface.
DOI: 10.5518/576
title: Characterisation of polyphosphate dispersant interactions with aluminium-doped titania nanoparticles during milling data set.

description: Experimental data generated for aluminium doped titanium dioxide nanoparticles which have been milled. The particles also have a dispersant attached prior to milling called sodium hexametaphosphate (SHMP). The data set includes measurements on the following: zeta potenital surface charge data, X-ray fluorescence elemental composition data, dynamic light scattering auto-correlation data, Brunauer-Emmett-Teller (BET) surface area data and relaxation NMR results.
DOI: 10.15468/dl.k33juf
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteris venusta Kunze"
 ]
}

 The dataset includes 347 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011875-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e184244
title: Data and code for: Opposing firm-level responses to the China shock: output competition versus input supply

description: We decompose the ``China shock'' into two components that induce differentadjustments for firms exposed to Chinese exports: an output shockaffecting firms selling goods that compete with similar imported Chinesegoods, and an input supply shock affecting firms using inputssimilar to the imported Chinese goods. Combining French accounting, customs,and patent information at the firm-level, we show that the output shock isdetrimental to firms' sales, employment, and innovation. Moreover, thisnegative impact is concentrated on low-productivity firms. By contrast, wefind a positive effect - although often not significant - of the inputsupply shock on firms' sales, employment and innovation.<br>
DOI: 10.3886/e184244v1-157863
title: Data and code for: Opposing firm-level responses to the China shock: output competition versus input supply

description: We decompose the ``China shock'' into two components that induce differentadjustments for firms exposed to Chinese exports: an output shockaffecting firms selling goods that compete with similar imported Chinesegoods, and an input supply shock affecting firms using inputssimilar to the imported Chinese goods. Combining French accounting, customs,and patent information at the firm-level, we show that the output shock isdetrimental to firms' sales, employment, and innovation. Moreover, thisnegative impact is concentrated on low-productivity firms. By contrast, wefind a positive effect - although often not significant - of the inputsupply shock on firms' sales, employment and innovation.<br>
DOI: 10.6084/m9.figshare.19474316.v8
title: Fern Tree of Life (FTOL) input data

description: The data included here are used in a pipeline that (mostly) automatically generates a maximally sampled fern phylogenetic tree based on plastid sequences in GenBank (https://github.com/fernphy/ftol).<br>
<br>
The first step is to download the latest release of GenBank data from the NCBI GenBank FTP site (https://ftp.ncbi.nlm.nih.gov/genbank/) and use it to create a local database of fern sequences. This is done with custom R scripts contained in https://github.com/fernphy/ftol, in particular setup_gb.R (https://github.com/fernphy/ftol/blob/main/R/setup_gb.R).<br>
<br>
Next, a set of reference FASTA files for 79 target loci (one per locus; ref_aln.tar.gz) is generated. These include 77 protein-coding genes based on a list of 83 genes (Wei et al. 2017) that was filtered to only genes that show no evidence of duplication, plus two spacer regions (trnL-trnF and rps4-trnS). Each FASTA file in ref_aln.tar.gz includes one representative (longest) sequence per avaialable fern genus. This is done with prep_ref_seqs_plan.R (https://github.com/fernphy/ftol/blob/main/prep_ref_seqs_plan.R).<br>
<br>
Sequences matching the target loci are then extracted from each accession in the local database using the FASTA files contained in ref_aln.tar.gz as references with the “Reference_Blast_Extract.py” script of superCRUNCH (Portik and Wiens 2020).<br>
<br>
The extracted sequences are aligned with MAFFT (Katoh et al. 2002), phylogenetic analysis is done using IQ-TREE (Nguyen et al. 2015) and divergence times estimated with treePL (Smith and O’Meara 2012).<br>
<br>
For additional methodological details, see:<br>
<br>
Nitta JH, Schuettpelz E, Ramírez-Barahona S, Iwasaki W. 2022. An open and continuously updated fern tree of life. Frontiers in Plant Sciences 13 https://doi.org/10.3389/fpls.2022.909768.<br>
DOI: 10.15468/dl.fvxzye
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-38.48482 31.63969,-2.42115 31.63969,-2.42115 47.23136,-38.48482 47.23136,-38.48482 31.63969))",
 "TaxonKey is Pollichthys mauli (Poll, 1953)"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011876-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/577
title: Data associated with ‘Analysis of 2-D DNA Origami with Nanopipettes’

description: Ion current recordings of DNA origami translocation experiments. Nanopipettes are a useful tool for the detection and analysis of biological molecules at the single-molecule level. Here, we employ nanopipettes fabricated from glass capillaries to identify differently structured 2D DNA origami through the distinctive amplitude and dwell time of the ion current peak resulting from the translocation of the origami through the nanopipette pore. We demonstrate that the ion current peak originating from frame-like DNA origami comprises two individual peaks in contrast to solid tiles of similar size that only lead to a single peak in the ion current. Interestingly, the fine details of the shape of the double peak characteristic of the translocation of DNA origami frames are correlated with the structural features of the DNA origami. In particular, the size of the central cavity governs the lag time between the two constituent peaks of the double-peak. This work demonstrates the ability of glass nano- pipettes to identify and characterize differently structured DNA origami of similar size, advancing the potential of nanopipettes for high-sensitivity single-molecule studies.
DOI: 10.5281/zenodo.14011070
title: The genomic structure of complex chromosomal rearrangement at the Fm locus in black-bone Silkie chicken

description: The genomic structure of complex chromosomal rearrangement at the Fm locus in black-bone Silkie chicken




Ashutosh Sharma, Nagarjun Vijay*




Computational Evolutionary Genomics Lab, Department of Biological Sciences, IISER Bhopal, Bhauri, Madhya Pradesh, India


*Corresponding author: nagarjun@iiserb.ac.in

Arising from Zhu, F., Yin, ZT., Zhao, QS. et al. Communications Biology https://doi.org/10.1038/s42003-023-05619-y (2023)
DOI: 10.5281/zenodo.14010413
title: Multi-analytical investigations of hydrothermal activity and faulting in the Convoy Range sector (southern Victoria Land, Antarctica)

description: The dataset contains structural data from field sites investigated in the Convoy Range sector of the Transantarctic Mountains (southern Victoria Land, Antarctica), and  mineralogical-geochemical, thermochronological data from selected rock samples collected along fault zones.
DOI: 10.5281/zenodo.14010414
title: Multi-analytical investigations of hydrothermal activity and faulting in the Convoy Range sector (southern Victoria Land, Antarctica)

description: The dataset contains structural data from field sites investigated in the Convoy Range sector of the Transantarctic Mountains (southern Victoria Land, Antarctica), and  mineralogical-geochemical, thermochronological data from selected rock samples collected along fault zones.
DOI: 10.15468/dl.25367c
title: Occurrence Download

description: A dataset containing 26221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((112.77563 32.49032,101.35246 24.80657,99.09856 6.51925,113.69768 -3.77697,140.94938 20.19632,125.47943 39.71304,112.77563 32.49032))",
 "TaxonKey is Scleractinia"
 ]
}

 The dataset includes 26221 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011877-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13903973
title: Enhancing Non-Uniformly Lighted Images: Experiments on BSIMAGE

description: This repository contains the image dataset BSIMAGE and a set of enhanced versions obtained by using 11 different algorithms,  including Retinex inspired approaches, a bilateral filter, multi-level enhancers, segmentation based enhancers, histogram equalizers, deep-learning based techniques.

BSIMAGE contains 70 real-world color pictures acquired by commercial cameras under uneven illuminations caused for instance by specific camera settings highlighting some objects while darkening the rest, by particular positions and orientations of the light sources in the scene, by backlight or by brilliant lights scarcely spreading over the scene. Typically, these pictures contain very dark and very bright regions (see BSIMAGEExamples.jpg for some examples) which make their enhancement particularly challenging. In fact, one has to improve the quality of the dark areas without over-enhancing the bright ones.

The 11 enhanced versions of BSIMAGE are stored as zipped folders, as indicated in the pdf file icnluded in this repository.Please cite the paper indicated in 'Related Works' when using the images contained in this repository.
DOI: 10.5281/zenodo.13903974
title: Enhancing Non-Uniformly Lighted Images: Experiments on BSIMAGE

description: This repository contains the image dataset BSIMAGE and a set of enhanced versions obtained by using 11 different algorithms,  including Retinex inspired approaches, a bilateral filter, multi-level enhancers, segmentation based enhancers, histogram equalizers, deep-learning based techniques.

BSIMAGE contains 70 real-world color pictures acquired by commercial cameras under uneven illuminations caused for instance by specific camera settings highlighting some objects while darkening the rest, by particular positions and orientations of the light sources in the scene, by backlight or by brilliant lights scarcely spreading over the scene. Typically, these pictures contain very dark and very bright regions (see BSIMAGEExamples.jpg for some examples) which make their enhancement particularly challenging. In fact, one has to improve the quality of the dark areas without over-enhancing the bright ones.

The 11 enhanced versions of BSIMAGE are stored as zipped folders, as indicated in the pdf file icnluded in this repository.Please cite the paper indicated in 'Related Works' when using the images contained in this repository.
DOI: 10.15468/dl.5tx7w5
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eucalyptus L'Hér.)",
 "Country is one of (United Kingdom of Great Britain and Northern Ireland)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011878-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u49k33
title: Occurrence Download

description: A dataset containing 594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Eucalyptus L'Hér.)",
 "Continent is one of (Europe)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 594 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011879-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/578
title: Dataset associated with "The importance of crystalline phases in ice nucleation by volcanic ash"

description: Volcanic ash is known to nucleate ice when immersed in supercooled water droplets. This process may impact the properties and dynamics of the eruption plume and cloud, as well as those of meteorological clouds once the ash is dispersed in the atmosphere. However, knowledge of what controls the ice-nucleating activity (INA) of ash remains limited, although it has been suggested that crystalline components in ash may play an important role. Here we adopted a novel approach using nine pairs of tephra and their remelted and quenched glass equivalents to investigate the influence of chemical composition, crystallinity and mineralogy on ash INA in the immersion mode. For all nine pairs studied, the crystal-bearing tephra nucleated ice at warmer temperatures than the corresponding crystal-free glass, indicating that crystalline phases are key to ash INA. Similar to findings for desert dust from arid and semi-arid regions, the presence of feldspar minerals characterises the four most ice-active tephra samples, although a high INA is observed even in the absence of alkali feldspar in samples bearing plagioclase feldspar and orthopyroxene. There is evidence of a potential indirect relationship between chemical composition and ash INA, whereby a magma of felsic to intermediate composition may generate ash containing ice-active feldspar or pyroxene minerals. This complex interplay between chemical composition, crystallinity, and mineralogy could help to explain the variability in volcanic ash INA reported in the literature. Overall, by demonstrating the importance of crystalline phases in the INA of ash, our study contributes insights essential for better appraising the role of airborne ash in ice formation. Among these is the inference that glass-dominated ash emitted by the largest explosive volcanic eruptions might be less effective at impacting ice-nucleating particle populations than crystalline ash generated by smaller, more frequent eruptions.
DOI: 10.25392/leicester.data.27325713
title: Synthesis and Characterisation of Phosphino-aryloxide Rare Earth Complexes

description: The dataset contains analytical and spectroscopic data in support of a manuscript submission. The folders contain X-ray crystallography data for all compounds synthesised, multinuclear Nuclear Magnetic Resonance (NMR) spectroscopic data and infrared (IR) spectroscopic data.
DOI: 10.25392/leicester.data.27325713.v1
title: Synthesis and Characterisation of Phosphino-aryloxide Rare Earth Complexes

description: The dataset contains analytical and spectroscopic data in support of a manuscript submission. The folders contain X-ray crystallography data for all compounds synthesised, multinuclear Nuclear Magnetic Resonance (NMR) spectroscopic data and infrared (IR) spectroscopic data.