cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/9f0841213d7087ec746b3c0d288c389d
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species II - Berry Production 2013-2018

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011.  In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/f5f36fa71cbbcd6b1eba17ad0bc1afb6
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species I - Bud burst and Senescence 2013-2018

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.1285/i15912221v26p158
title: Colophon
DOI: 10.21227/7bse-4095
title: Urdu Nastalique

description: The performance of most of the classification models is dependent on the data used for training. The data must be reliable, robust and meticulously labelled. In order to form such a data a systematical approach has been designed and moreover, it should be. The data set was collected from a well-known source, namely Center for Language Engineering available at http://www.cle.org.pk. The corpus available on the website used for prediction contains Urdu Naskh data having 4,325 number of lines and 1, 22284 words. This corpus contains three text files. The mentioned corpus is converted into Jameel Noori Urdu Nastalique font style having 4,325 number of lines and 1, 22284 words. Due to context sensitive nature of Urdu Nastalique it poses several challenges. The mentioned corpus text is converted into images because in OCR systems ligature segmentation and line segmentation of images is itself a challenging task.
DOI: 10.6073/pasta/218e76b8f5e3fb4bfaebd3443d26627c
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species II - Berry Production 2013-2018

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/2eb020103df4d213a26b0abc66868380
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (DryPEHR): Phenology of Dominant Plant Species III - Flowering Date 2013-2018

description: This drying and warming experiment addresses the following questions: 1) Does ecosystem drying, warming and permafrost thaw cause a net release or uptake of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C that comprises the bulk of the soil C pool influence ecosystem C loss? 3) How do drying and warming affect plant communities and ecosystem properties? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming began in 2008; OTCs and drying in 2011. In this dataset we specifically ask, how does warming and drying of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.6073/pasta/df1b08285422add4f9387ccf1ebd22ec
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species I - Bud burst and Senescence 2013-2018

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.21227/s45q-be84
title: Urdu Nastalique

description: The performance of most of the classification models is dependent on the data used for training. The data must be reliable, robust and meticulously labelled. In order to form such a data a systematical approach has been designed and moreover, it should be. The data set was collected from a well-known source, namely Center for Language Engineering available at http://www.cle.org.pk. The corpus available on the website used for prediction contains Urdu Naskh data having 4,325 number of lines and 1, 22284 words. This corpus contains three text files. The mentioned corpus is converted into Jameel Noori Urdu Nastalique font style having 4,325 number of lines and 1, 22284 words. Due to context sensitive nature of Urdu Nastalique it poses several challenges. The mentioned corpus text is converted into images because in OCR systems ligature segmentation and line segmentation of images is itself a challenging task.
DOI: 10.3886/e108643v1
title: Intergenerational Mobility within and between Canada and the United States

description: This is the data archive for the article "Intergenerational Mobility within and between Canada and the United States" by Marie Connolly, Miles Corak and Catherine Haeck, to be published in the Journal of Labor Economics.<br>
DOI: 10.6073/pasta/289688466060554618b7cfdad3b1b407
title: Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating Research (CiPEHR): Phenology of Dominant Plant Species III - Flowering Date 2013-2018

description: The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. In this dataset we specifically ask, how does warming of soil and air impact the phenology of dominant plant species? Phenological data was collected to determine the timing of first bud break, onset and completion of senescence, and reproductive effort (flower and berry production).
DOI: 10.17632/x9nhyrfm42.1
title: Influence of the physico-chemical properties of root mucilage and model substances on the microstructural stability of sand

description: Raw data from the experiments conducted in the manuscript entitled "Influence of the physico-chemical properties of root mucilage and model substances on the microstructural stability of sand"
DOI: 10.17632/xt4br8zmtz.1
title: Anticancer activity of fungal endophytes from Datura stramonium on two human cancer cell lines

description: Datura stramonium is a medicinal plant of the Solanaceae family. The plant is known to produce toxic alkaloids which include atropine, hyoscyamine and scopolamine. The data sets herein represent the findings from the isolation of fungal endophytes from the stems, leaves and seeds of D. stramonium. Eleven fungal endophytes were recovered from the plant and the internal transcribed spacer region (ITS1 and ITS4) of each isolate was sequenced and the data was deposited in GenBank. Accession numbers of each fungal isolate and the phylogeny reconstruction are all shown in Supplementary File 1. Ethyl acetate crude extracts from the fungal isolates were screened for anticancer activity on two human cancer cell lines (UMG87 glioblastoma cells and A549 lung carcinoma cells) using the MTS [3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium] assay. The crude extract from the fungal endophyte Alternaria sp. KTDL7 was found to be cytotoxic on UMG87 glioblastoma cells while the other fungal extracts showed limited anti-proliferation activity on both cell lines. The data cytotoxicity experiments is shown in Supplemetary File 2 and 3. Untargeted secondary metabolite screening for Alternaria sp. KTDL7 was done using LC-QTOF-MS/MS and the data is shown in Supplementary File 4.
DOI: 10.17632/j8xwxdtbyb.1
title: Data for: Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error

description: File: 01.aaCOGS_and_nCOGs_unaligned_unfiltered.tar.gz Description: The 3,057 amino-acid COGs and the corresponding nucleotide COGs as they resulted from the orthology assignment step. File: 02.aaCOGs_and_nCOGs_aligned_filtered_unmasked.tar.gz Description: The 2,991 aligned aaCOGs and the corresponding codon-based nucleotide sequence alignments before applying alignment masking with ALISCORE. File: 03.aminoacid_supermatrices.tar.gz Description: All inferred amino-acid supermatrices and the corresponding partition files. File: 04.nucleotide_supermatrices.tar.gz Description: All inferred nucleotide supermatrices and the corresponding partition files.
DOI: 10.17632/b89yzfcxp8.1
title: Assembly Statistics

description: Statistics of de novo assembly using Velvet. Whole genome sequence data was obtained from the SRA and the original study for the data was Chochua et al. 2017 mBio doi: 10.1128/mBio.01422-17
DOI: 10.17632/cyy9m2cytv.1
title: Analysis of I-Xe data to understand debris disk dissipation.

description: A macro-enabled microsoft excel workbook with calculations for results presented in Gilmour, J.D., Filtness, M.J., 2019. Dissipation of the Solar System’s debris disk recorded in primitive meteorites. Nature Astronomy. Published online 25th February 2019 DOI 10.1038/s41550-019-0696-0 Viewable at https://rdcu.be/borV8
DOI: 10.17632/hkp5ykppnp.1
title: trial_dataset

description: The data reports a translational study focused on the experimental induction of O138 E. coli infection in weaned piglets as a model to study innovative alternative to antibiotics compounds
DOI: 10.17632/22jxyhsjtf.1
title: Replications file for "Estimating firm product quality using trade data".

description: Replications file for "Estimating firm product quality using trade data".
DOI: 10.17632/66d6y439ms.1
title: Sediment core elemental concentration data from pXRF and ICP-MS of sediment from Valley Park, MO
DOI: 10.17632/b8w9frmpbh.1
title: #ThisIsTheRealSpain 2019.01.30 - 2019.02.24

description: Dataset that collects tweets between January 30th and February 24th in 2019 with Twarc. Twarc is a tool by Documenting the Now: http://www.docnow.io/#tools #ThisIsTheRealSpain was a campaign by Josep Borrell, the Minister of Foreign Affairs, European Union and Cooperation of Spain at the time, who wanted to show a more democratic and respectful image of the Spanish State. España Global (@EspanaGlobal) | Twitter https://twitter.com/EspanaGlobal Ana Botín y Jesús Calleja se suman al vídeo 'This is the real Spain' | España Global https://espanaglobal.gob.es/actualidad/sociedad/ana-bot%C3%ADn-y-jes%C3%BAs-calleja-se-suman-al-v%C3%ADdeo-real-spain http://ctrlq.org/first/154234-thisistherealspain/ Hashtags: #ThisIsTheRealSpain #SpanishInquisition Dates: 2019.01.30-2019.02.24 Number of Tweets: 268,039 Size (Hydrated): 1.87 gigabytes
DOI: 10.17632/d7y3x97hsx.1
title: Execution Results Bi-Objective NRP with FMOPSO-IBEA-NSGAII

description: This sheets contain the executions results for FMOPSO, IBEA and NSGA-II when applied to solve bi-objective next release problem instances.
DOI: 10.17632/fc5m7gw2dj.1
title: Data for: 3342823

description: Abstract An oligonucleotide microarray hybridization system to differentiate microbial species was designed and tested. Seven microbial species were studied, including one Bacillus and six Pseudomonas strains. DNA sequences near the 5′ end of 16S rRNA genes were aligned and two contiguous regions of high variability, flanked by highly conserved sequences, were found. The conserved sequences were used to design PCR primers which efficiently amplified these polymorphic regions from all seven species. The amplicon sequences were used to design 88 9mer hybridization probes which were arrayed onto glass slides. Single‐stranded, fluorescence‐tagged PCR products were hybridized to the microarrays at 15°C. The experimental results were compared with the Δ G ° values for all matched and mismatched duplexes possible between the synthetic probes and the 16S target sequences of the seven test species, calculated using a ‘virtual hybridization’ software program. Although the observed hybridization patterns differed significantly from patterns predicted solely on the basis of perfect sequence matches, a unique hybridization fingerprint was obtained for each of the species, including closely related Pseudomonas species, and there was a reasonable correlation between the intensity of observed hybridization signals and the calculated Δ G ° values. The results suggest that both perfect and mismatched pairings can contribute to microbial identification by hybridization fingerprinting.
DOI: 10.17632/h943vhrzf5.1
title: Gas chromatography-mass spectrometry separation method of 2-furanyl fentanyl and 3-furanyl fentanyl

description: A GC-MS method was developed to separate the positional isomers of 2-furanyl fentanyl and 3-furanyl fentanyl. This method is useful to forensic laboratories with limited resources for the routine qualitative detection of either 2- or 3-furanyl fentanyl isomer. The method utilizes a 100% dimethylpolysiloxane stationary phase, 30m x 0.25mm x 0.25µm column with pulsed splitless injection and is able to achieve a resolution of 1.78. Forensic evidentiary samples were run in tandem with samples of the isomeric mixture in which 2-furanyl fentanyl was identified via retention time and mass spectral data. The data files are CSV files of total ion chromatogram data.
DOI: 10.17632/pn9xdpvdvj.1
title: Data from: Wetland buffers are no substitute for landscape-scale conservation.

description: Abstract of associated article: Wetlands in farmland are at risk of contamination by fertilizers and pesticides. One recommendation for reducing wetland contamination is to maintain a buffer of contiguous uncropped land around the wetland (a 'wetland buffer'). Many agricultural water protection policies around the world recommend 5–50-m wide uncropped buffers around water bodies, but it is unclear how large wetland buffers must be to effectively protect against these chemicals. In addition, it is unclear whether wetland buffers have similar—or stronger—effects on fertilizer and pesticide contamination than reducing the amount of cropped land within the larger landscape context of wetlands. Our study, conducted across 37 wetlands in eastern Ontario, Canada, addressed the following questions: (1) Does increasing buffer width, or increasing the amount of contiguous uncropped land within recommended buffer width guidelines, reduce nutrient and pesticide levels in agricultural wetlands; (2) Does increasing uncropped land cover in the broader landscape reduce nutrient and pesticide levels in agricultural wetlands; and (3) What is the relative importance of buffer size and landscape-scale uncropped cover for reducing nutrient and pesticide levels in agricultural wetlands? A rigorous site selection process was employed to minimize the correlation between buffer size and landscape-scale uncropped cover, minimize spatial gradients in these predictor variables, and minimize variation in potentially confounding variables. We obtained nutrient and pesticide data by collecting water samples from each wetland under similar weather conditions in June–July 2015. Nitrate concentrations were measured using ion chromatography, and atrazine and neonicotinoid (pesticide) concentrations using a combination of high-performance liquid chromatography and mass spectrometry. We found that nitrate, atrazine, and neonicotinoid concentrations in study wetlands were unaffected by wetland buffer size. However, concentrations of each chemical decreased with uncropped land cover in the surrounding 150 to 300-m radius landscapes. To effectively protect water in agricultural wetlands from contamination by nitrate-based fertilizers and atrazine or neonicotinoid pesticides, we recommend either increasing the policy-recommended width of wetland buffers to at least 150 m, or abandoning the buffer paradigm in favor of landscape-scale conservation. Key words: agricultural wetland; atrazine; buffer zone; land use; neonicotinoids; nitrogen; pesticides; riparian buffer; scale of effect; spatial extent; vegetated filter strip; water quality. Note: To preserve privacy of landowners, latitude and longitude data have been omitted.
DOI: 10.17632/xvp7v9rt6k.1
title: SAWFutureProjections

description: This archive contains daily Santa Ana Wind Regional Index derived from the dynamically-trained statistical downscaling of winds from the NCEP/NCAR Reanalysis 1 (SAWRI.R1D.rdat) as well as from eight Global Climate Models (SAWRI.gcmname.rdat). SAWRI.R1D spams from 1948 to 2012 and SAWRI.gcmname run from 1950 to 2100. The projection period (2006-2100) was forced under a RCP8.5 in all GCMs.
DOI: 10.21227/4mgw-a077
title: Ima procedure for gap-filling LST and NDVI images of Navarre (Spain)

description: Run_IMA_proceure.R is an script that fills the clouds of the 3 target images or the complete neighborhood of 27 images of LST and NDVI remote sensing data in Navarre(Spain) and estimates the standard errors.
DOI: 10.5281/zenodo.2579334
title: Sample datasets for Transposon insertion sequencing analysis tutorial

description: The dataset contains five files:


	Tnseq-Tutorial-reads.fastqsanger.gz  - A subset of TnSeq reads published in  `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., & Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. <em>BMC Genomics</em>, <em>16</em>(1), 1–18. http://doi.org/10.1186/s12864-015-1361-3`
	condition_barcodes.fasta -  Set of barcodes to separate reads from different experimental conditions
	construct_barcodes.fasta  - Set of barcodes to separate reads from different transposon constructs
	staph_aur.fasta : Genome file for <em>Staphylococcus aureus </em>
	staph_aur.fasta : Annotation file for <em>Staphylococcus aureus </em>
DOI: 10.5281/zenodo.2579335
title: Sample datasets for Transposon insertion sequencing analysis tutorial

description: The dataset contains five files:


	Tnseq-Tutorial-reads.fastqsanger.gz  - A subset of TnSeq reads published in  `Santiago, M., Matano, L. M., Moussa, S. H., Gilmore, M. S., Walker, S., & Meredith, T. C. (2015). A new platform for ultra-high density Staphylococcus aureus transposon libraries. <em>BMC Genomics</em>, <em>16</em>(1), 1–18. http://doi.org/10.1186/s12864-015-1361-3`
	condition_barcodes.fasta -  Set of barcodes to separate reads from different experimental conditions
	construct_barcodes.fasta  - Set of barcodes to separate reads from different transposon constructs
	staph_aur.fasta : Genome file for <em>Staphylococcus aureus </em>
	staph_aur.fasta : Annotation file for <em>Staphylococcus aureus </em>
DOI: 10.17632/4pr6pd3g8k.1
title: Aberrant active cis-regulatory elements associated with downregulation of RET finger protein overcome chemoresistance in glioblastoma. Ranjit, Hirano et al.

description: These are the raw data used in our study.