cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13698409
title: An Evaluation of Equatorial Perturbation Electric Fields Using Empirical Vertical Drift Models

description: Dataset for the article titled "An Evaluation of Equatorial Perturbation Electric Fields Using Empirical Vertical Drift Models", submitted to Space Weather. The dataset includes the outputs from the four empirical vertical drift models used in the article: Fejer and Scherliess (1997), Kelley and Retterer (2008), Manoj and Maus (2012), and Scherliess and Fejer (1999).
DOI: 10.5281/zenodo.14422488
title: An Evaluation of Equatorial Perturbation Electric Fields Using Empirical Vertical Drift Models

description: Dataset for the article titled "An Evaluation of Equatorial Perturbation Electric Fields Using Empirical Vertical Drift Models", submitted to Space Weather. The dataset includes the outputs from the four empirical vertical drift models used in the article: Fejer and Scherliess (1997), Kelley and Retterer (2008), Manoj and Maus (2012), and Scherliess and Fejer (1999).
DOI: 10.34740/kaggle/dsv/10183744
title: Maternal Health and High-Risk Pregnancy Dataset.
DOI: 10.6084/m9.figshare.28020011.v1
title: Supplementary Material for: Biodistribution of Polymeric Nanoparticles following In-Utero Delivery to a Non-Human Primate

description: Monogenic diseases can be diagnosed before birth. Systemic fetal administration of nanoparticles (NP)s grants therapeutic access to developing stem cell populations impacted by these classes of disease. Delivery of editing reagents in these NPs administered before birth have yielded encouraging results in preclinical mouse models of monogenic diseases. To translate this strategy clinically, the safety and efficacy of this strategy in larger animals will be necessary. We performed a pilot biodistribution study in 3 fetal non-human primates (NHPs) in mid-gestation examining systemic delivery of polymeric NPs loaded with flourescent dye. We found several similarities in distribution to our experience in mice namely, extensive uptake in fetal liver and spleen. A striking finding that is not recapitulated in the mouse was the accumulation of NPs in the zones of proliferation and ossification of the fetal bone. Of great importance there did not appear to be NP accumulation in the fetal male or female germline zones or maternal tissue. These studies were vital to the next step of testing editing reagents in the fetal NHP with a goal of treating monogenic diseases before birth.
DOI: 10.15468/dl.yhftzb
title: Occurrence Download

description: A dataset containing 385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pandalus eous Makarov, 1935",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 385 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032320-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.4216326
title: testUPload.zip

description: upload to test API
DOI: 10.6084/m9.figshare.4216326.v1
title: testUPload.zip

description: upload to test API
DOI: 10.15468/dl.bapze8
title: Occurrence Download

description: A dataset containing 375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Geometry POLYGON ((-92.65119 16.69454, -92.55756 16.69454, -92.55756 16.78391, -92.65119 16.78391, -92.65119 16.69454))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material citation)"
 ]
 }
 }
 ]
}

 The dataset includes 375 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032321-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynphy9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trophogemma colantonii",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032322-241126133413365/datasets/export for details.
DOI: 10.15468/dl.bt7u87
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plecturocebus brunneus (Wagner, 1842)"
 ]
}

 The dataset includes 92 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032323-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ymyuj5
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharodon carcharias (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032324-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czpd59
title: Occurrence Download

description: A dataset containing 60449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "GadmGid is one of (CAN.1.16.4_1, CAN.1.16.19_1, CAN.1.16.12_1)",
 "TaxonKey is Chordata",
 "Year 2020-2024"
 ]
}

 The dataset includes 60449 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032325-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dyytxd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalus carcharias Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032326-241126133413365/datasets/export for details.
DOI: 10.15468/dl.6fwusy
title: Occurrence Download

description: A dataset containing 5842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-28.7704 33.91221,47.67759 33.91221,47.67759 71.88538,-28.7704 71.88538,-28.7704 33.91221))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Psilocybe semilanceata (Fr.) P.Kumm."
 ]
}

 The dataset includes 5842 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032327-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcpvyg
title: Occurrence Download

description: A dataset containing 3154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil cephalus Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3154 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032328-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eazbhh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil capurrii (Perugia, 1892)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032329-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3597338_d3
title: MOESM5 of Piezo-tolerant natural gas-producing microbes under accumulating pCO2

description: Additional file 5. Raw reactor data for propionate kinetic experiment.
DOI: 10.6084/m9.figshare.c.3641921_d5
title: MOESM2 of Bone morphogenetic protein 2 (BMP2) induces growth suppression and enhances chemosensitivity of human colon cancer cells

description: Additional file 2: Table S1. Differentiatlly expressed genes (&gt;2.0 FC) between HCT116 LV BMP2 and HCT116 LV control cells.
DOI: 10.6084/m9.figshare.3406606
title: Characterizing the Retinal Function of Psammomys obesus: A Diurnal Rodent Model to Study Human Retinal Function

description: <i>Purpose</i>: To compare the retinal function of a diurnal murid rodent, <i>Psammomys obesus</i>, with that of Wistar albino rat and human subjects.<i>Materials and methods</i>: Adult <i>Psammomys obesus</i> were captured and transferred to the animal facilities where they were maintained at 25°C with standard light/dark cycles and natural halophilic plants, rich in water and mineral salts. Standard full-field photopic and scotopic electroretinograms were obtained.<i>Results</i>: The right eye of all animals displayed well detectable and reproducible scotopic and photopic electroretinogram (ERG) responses. Results were compared with those obtained from human subjects and Wistar rats. ERG measurement showed that the amplitudes of scotopic responses in <i>Psammomys obesus</i> are quite similar to those of human subjects. The amplitude of the photopic a-wave was comparable to that of humans and six times higher than that of the albino rat. The amplitudes of photopic b-wave, photopic oscillatory potentials (OPs), and 30 Hz flicker were all markedly larger in <i>Psammomys obesus</i> compared to those obtained from human subjects and Wistar rats. Furthermore, like the human photopic ERG, the photopic ERG of <i>Psammomys obesus</i> also includes prominent post b-wave components (i.e. i- and d-waves) while the ERG of Wistar rats does not.<i>Conclusions</i>: Our results suggest that the retinal function of <i>Psammomys obesus</i>, especially the cone-mediated function, shares several features with that of human subjects. We believe that <i>Psammomys obesus</i> represents an interesting alternative to study the structure and function of the normal and diseased retina in a human-like rodent model of retinal function.<br>
DOI: 10.6084/m9.figshare.3504110
title: Analysis of soil eDNA functional genes%3A potential to increase profitability and sustainability of pastoral agriculture

description: Management of soil biological resources to optimise plant production, efficiency of nutrient inputs, and system sustainability is an emerging opportunity for pastoral agriculture. To achieve these goals, suitable tools that can assess the functional state of the soil ecosystem must be developed and standardised approaches to their application adopted. Towards this end, we have undertaken comprehensive, high-density functional-gene microarray analysis (GeoChip5) of environmental DNA (eDNA) extracted from 50 pastoral soils. When combined with soil, environmental and management metadata, the information can be used to provide insights into soil biological processes spanning greenhouse gas emissions, through to natural suppression of plant root diseases. To provide an example of a structured workflow of analysis in a pastoral system context, we analysed the GeoChip data using a combination of approaches spanning routine univariate methods through to more complex multivariate and network-based analysis. Analyses were restricted to comparing effects of land-use (dairy or ‘other’ farming systems), and exploring relationships of the GeoChip data with the soil properties from each sample. These exemplar analyses present a pathway for the application of eDNA approaches (GeoChip or others) to deliver outcomes for pastoral agricultural in New Zealand.
DOI: 10.6084/m9.figshare.3506276
title: Environmental stress drives herbivory rates and species selection in subtidal seagrass communities

description: Grazing is a fundamental ecological process structuring seagrass
ecosystems, yet the environmental drivers influencing grazing are poorly
understood. Whilst the stress gradient hypothesis (SGH) is commonly used to
predict competitive species interactions under environmental stress, it is
possible to adapt the mechanistic model behind the concept to include predictions
for herbivory. In subtidal marine systems, however, this modified SGH has
seldom been tested.<br><br>We deployed forage-choice assays using the five most common seagrass species
of Shark Bay (<i>Amphibolis antarctica,
Posidonia australis, Halodule uninervis, Cymodocea angustata </i>and<i> Halophila ovalis</i>), to determine whether
herbivory pressure and feeding choice changed across a salinity-stress gradient
from normal oceanic salinities (~38‰) to hyper-saline conditions (&gt;50‰). <br><br>Biomass of seagrass tissue removed from forage-choice assays decreased as environmental
stress increased, showing salinity is a key environmental driver of grazing.
The salinity stress threshold was identified as the marine environment
approached hyper-saline conditions at around 41‰. Here, herbivory pressure decreased
to negligible levels, meaning seagrass community structure was influenced by other
ecosystem processes. With salinity-stress such a predominant feature within
this area it is therefore likely to be a major contributor. Herbivores
preferred the smaller tropical/sub-tropical seagrass species compared to the
larger temperate species that dominate seagrass cover in Shark Bay. This
preference was upheld across the entire salinity-stress gradient and was
correlated with enriched seagrass nitrogen and phosphorous concentrations. <br><br>Our work supports the modified SGH and presents the first example of this
novel hypothesis predicting herbivory interactions along a salinity-stress
gradient within the marine environment. By demonstrating the fundamental
relationship between trophic interactions and environmental conditions we
underscore the importance of including a suite of abiotic and biotic processes
when studying seagrass dynamics.<br><i><br></i>Synthesis: The complexity of
interactions within and between biotic and abiotic components of marine systems
plays an uncommonly recognised role in determining the structure and dynamics
of subtidal seagrass environments. We show that the relative importance of
trophic interactions can be a function of environmental conditions, and advance
our understanding of the effectiveness of field approaches in developing
predictive frameworks to determine potential mechanisms of impact on marine
communities.
DOI: 10.6084/m9.figshare.3506366.v2
title: Additional File 8. Sequence identifiers in the alignments, gene partitions for the concatenated dataset including or not the 3rd position.

description: Additional File 8. Sequence
identifiers in the alignments, gene partitions for the concatenated dataset
(9711 nt.) and for the concatenated dataset without the third position (6474
nt.).
DOI: 10.15468/dl.2jjaaf
title: Occurrence Download

description: A dataset containing 1441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachurus japonicus (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1441 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032330-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3595565_d1
title: Additional file 2: of Extensive variation between tissues in allele specific expression in an outbred mammal

description: Contains supplementary material including Tables S3, S4, S5 and S10. (XLSX 7470Â kb)
DOI: 10.6084/m9.figshare.c.3595547_d3
title: Additional file 3: of Fluid consumption and taste novelty determines transcription temporal dynamics in the gustatory cortex

description: ANOVA differential expression. The influence of time (1,3 hrs), treatment (novel saccharin, water) and the interaction between the two on mRNA expression in the GC. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3595580_d2
title: Additional file 1: of An artificial neural network for
            membrane-bound catechol-O-methyltransferase
            biosynthesis with Pichia pastoris methanol-induced
            cultures

description: ANN parameters employed for the final validation model.
DOI: 10.6084/m9.figshare.c.3595604_d1
title: Additional file 1: of Follow-up practices for high-grade extremity Osteosarcoma

description: Bone Sarcoma Data Set. (CSV 6 kb)
DOI: 10.6084/m9.figshare.c.3595622_d5
title: Additional file 1: of 
                     In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa

description: Statistics and sequence labeling of existing datasets. For each existing myxozoan dataset on which the in silico pipeline was implemented, percent breakdown and categorization of each sequence, as well as cumulative statistics. (XLSX 286Â kb)
DOI: 10.6084/m9.figshare.c.3595622_d6
title: Additional file 7: of 
                     In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa

description: Transcripts matched only to Myxozoa. The 37,482 transcripts of Myxobolus pendula that were matched only to myxozoan query sequences and to no other taxon. (FA 22455Â kb)
DOI: 10.6084/m9.figshare.c.3595619_d6
title: Additional file 2: Table S1. of Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus

description: Orthologous relationship of TCPs between watermelon and Arabidopsis. (XLSX 39 kb)
DOI: 10.15468/dl.tg49p2
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Peperomia bradei Yunck."
 ]
}

 The dataset includes 6 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032331-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3595622_d7
title: Additional file 5: of 
                     In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa

description: Extracellular Matrix glycoproteins of Myxobolus pendula. The 15 transcripts that matched to Hydra extracellular matrix proteins were analyzed for domain structure and BLASTp matching to nr. Three of 15 transcripts were observed to contain signal peptides. (XLSX 40 kb)
DOI: 10.15468/dl.mez9y9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caranx trachurus (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032332-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3595685_d5
title: Additional file 10: Table S5. of Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

description: Overall and ethnicity-specific associations between SNVs with MAF &gt;0.005 and breast cancer risk in 2288 cases and 2323 controls across four ethnicities. EA European Americans, AA African Americans, LA Latinas, JA Japanese Americans, MAF Minor allele frequency. (XLSX 6660 kb)
DOI: 10.6084/m9.figshare.c.3595703_d4
title: Additional file 4: of Mindfulness-based cognitive therapy for inflammatory bowel disease patients: findings from an exploratory pilot randomised controlled trial

description: Three-minute breathing space Audio. (ZIP 2972 kb)
DOI: 10.6084/m9.figshare.c.3595685_d6
title: Additional file 14: Table S8. of Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

description: Gene-based rare-variant associations by ethnicity (pâ
DOI: 10.6084/m9.figshare.c.3595757_d3
title: Additional file 1: F1. of Changes in gene methylation patterns in neonatal murine hearts: Implications for the regenerative potential

description: The lists of differentially methylated genomic regions and differentially expressed genes and the complete results of gene ontology analyses. (XLSX 16191 kb)
DOI: 10.6084/m9.figshare.c.3595760_d2
title: MOESM2 of Social structure and Escherichia coli sharing in a group-living wild primate, Verreauxâ  s sifaka

description: Additional file 2. Dyadic home range overlap and intergroup encounter rates. A table of home range overlap and intergroup encounter rates per group-dyad.
DOI: 10.6084/m9.figshare.c.3595757_d4
title: Additional file 4: F4. of Changes in gene methylation patterns in neonatal murine hearts: Implications for the regenerative potential

description: PCR primers used for qPCR validation of microarray results. MDRE-qPCR – primers used for the estimation of DNA methylation. RT-qPCR – primers used to determine transcript levels. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3595784_d1
title: MOESM1 of Trends in glyphosate herbicide use in the United States and globally

description: Additional file 1. List of supplemental tables.
DOI: 10.6084/m9.figshare.c.3595787_d2
title: Additional file 1: of Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

description: Table S1. Sources for the 758 goat control-region sequences. Table S2. Control-region haplotypes and haplogroup classification of the 758 mtDNA sequences from Capra aegagrus (n = 19) and Capra hircus (n = 739). Table S3. Partial coding-region haplotypes and haplogroup classification of two bezoar mtDNAs. Table S4. Source and haplogroup affiliation of the goat complete mtDNA sequences. Figure S1. Nucleotide diversity and total number of substitutions along the entire mtDNA. Figure S2. A putative most parsimonious tree of 84 complete mtDNA sequences from goats. (XLSX 1268 kb)
DOI: 10.6084/m9.figshare.c.3595790_d1
title: Additional file 1: Table S1. of Systemic inflammation is an independent predictive marker of clinical outcomes in mucosal squamous cell carcinoma of the head and neck in oropharyngeal and non-oropharyngeal patients

description: Patient demographic differences between p16 tested and non-tested oropharyngeal patients. (XLSX 11Â kb)
DOI: 10.15468/dl.3waa7w
title: Occurrence Download

description: A dataset containing 464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Conger myriaster (Brevoort, 1856)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 464 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032333-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.