cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7641161.v1
title: Additional file 6: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S6. The GO terms which were enriched by coherent target genes of differentially expressed lncRNAs in different comparisons. (XLSX 21 kb)
DOI: 10.7284/108725
title: Gyrocompass data collected during research cruise EN492 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7641149
title: Additional file 4: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S4. Summary of significantly differentially expressed lncRNA between ovules of two rice lines at three developmental stages. (XLSX 163 kb)
DOI: 10.6084/m9.figshare.7641155.v1
title: Additional file 5: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S5. The coherent target genes of significantly differentially expressed lncRNAs in all comparisons (GO annotation of these genes were listed). (XLSX 180 kb)
DOI: 10.6084/m9.figshare.7641149.v1
title: Additional file 4: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S4. Summary of significantly differentially expressed lncRNA between ovules of two rice lines at three developmental stages. (XLSX 163 kb)
DOI: 10.6084/m9.figshare.7641137
title: Additional file 3: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S3. The normalized FPKM values for all lncRNAs and mRNAs in all samples. (XLSX 2100 kb)
DOI: 10.7284/108726
title: Gyrocompass data collected during research cruise EN492 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7641137.v1
title: Additional file 3: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S3. The normalized FPKM values for all lncRNAs and mRNAs in all samples. (XLSX 2100 kb)
DOI: 10.6084/m9.figshare.7641131
title: Additional file 2: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S2. Summary of reads mapping to rice genome in three developmental stages ovules of fsv1 and Gui99. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7641125
title: Additional file 1: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S1. The primers used for quantitative real-time PCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7641131.v1
title: Additional file 2: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S2. Summary of reads mapping to rice genome in three developmental stages ovules of fsv1 and Gui99. (XLSX 10 kb)
DOI: 10.7284/107358
title: Singlebeam Echosounder data collected during research cruise EN492 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7641125.v1
title: Additional file 1: of Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

description: Table S1. The primers used for quantitative real-time PCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7641110
title: Additional file 4: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S4. Proteins identified in purified mitochondria from each individuals. The data presented is the combined search of three biological replicates (XLS 1701 kb)
DOI: 10.7284/108728
title: Speedlog data collected during research cruise EN492 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7641110.v1
title: Additional file 4: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S4. Proteins identified in purified mitochondria from each individuals. The data presented is the combined search of three biological replicates (XLS 1701 kb)
DOI: 10.7284/108727
title: TSG (Thermosalinograph) data collected during research cruise EN492 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7641098
title: Additional file 1: of Cardiac and autonomic function in patients with Wilsonâ s disease

description: Table S1 Clinical characteristics of the WD patients. Table S2 Laboratory characteristics of the studied WD patients. Table S3 Association between UWDRS and clinical characteristics. Figure S1. Comparison of SDNN-Index of WD patients and controls. *** P &lt; 0.001. Figure S2. Comparison of Triangular Index of WD patients and controls. *** P &lt; 0.001, ** P = 0.005, * P = 0.05. (ZIP 45 kb)
DOI: 10.6084/m9.figshare.7641101
title: Additional file 3: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S3. iTRAQ-quantified Mitochondrial proteins with log2 iTRAQ ratio. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.7641098.v1
title: Additional file 1: of Cardiac and autonomic function in patients with Wilsonâ s disease

description: Table S1 Clinical characteristics of the WD patients. Table S2 Laboratory characteristics of the studied WD patients. Table S3 Association between UWDRS and clinical characteristics. Figure S1. Comparison of SDNN-Index of WD patients and controls. *** P &lt; 0.001. Figure S2. Comparison of Triangular Index of WD patients and controls. *** P &lt; 0.001, ** P = 0.005, * P = 0.05. (ZIP 45 kb)
DOI: 10.7284/108729
title: TSG (Thermosalinograph) data collected during research cruise EN492 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7641083
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Raw Data

description: We downloaded open access papers via PubMed from 10 systems and computational biology journals. We provide in this repository raw data in XML format. <br>Our approach to extract software links from the downloaded papers and verify the archival stability of links is described in the Methods section of the paper. Timeout links were manually verified. Links extracted from the abstracts and the body of the surveyed papers (n=48,393) are available in CSV format here. <br>For more information, please visit our main repository:https://github.com/smangul1/good.software<br>
DOI: 10.6084/m9.figshare.7641101.v1
title: Additional file 3: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S3. iTRAQ-quantified Mitochondrial proteins with log2 iTRAQ ratio. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.7641089
title: Additional file 1: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S1. iTRAQ quantified human brain proteome of AD individuals and their age-matched control. The data is combined search of three biological replicates. (XLSX 959 kb)
DOI: 10.6084/m9.figshare.7641092
title: Additional file 2: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S2. iTRAQ quantified human brain proteome of AD individuals and their age-matched control with more than 2 peptides. The data is combined search of three biological replicates. (XLSX 1485 kb)
DOI: 10.6084/m9.figshare.7641092.v1
title: Additional file 2: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S2. iTRAQ quantified human brain proteome of AD individuals and their age-matched control with more than 2 peptides. The data is combined search of three biological replicates. (XLSX 1485 kb)
DOI: 10.6084/m9.figshare.7641089.v1
title: Additional file 1: of Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimerâ s disease

description: Table S1. iTRAQ quantified human brain proteome of AD individuals and their age-matched control. The data is combined search of three biological replicates. (XLSX 959 kb)
DOI: 10.7284/107228
title: Multiplexed data collected during research cruise EN493 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor
DOI: 10.6084/m9.figshare.7641083.v1
title: Dataset: Analysis of the installability and archival stability of omics computational tools

description: We downloaded open access papers via PubMed from 10 systems and computational biology journals. We provide in this repository raw data in XML format. <br>Our approach to extract software links from the downloaded papers and verify the archival stability of links is described in the Methods section of the paper. Timeout links were manually verified. Links extracted from the abstracts and the body of the surveyed papers (n=48,393) are available in CSV format here. <br>For more information, please visit our main repository:https://github.com/smangul1/good.software<br>
DOI: 10.6084/m9.figshare.7641083.v2
title: Dataset: Analysis of the installability and archival stability of omics computational tools

description: We downloaded open access papers via PubMed from 10 systems and computational biology journals. We provide in this repository raw data in XML format. <br>Our approach to extract software links from the downloaded papers and verify the archival stability of links is described in the Methods section of the paper. Timeout links were manually verified. Links extracted from the abstracts and the body of the surveyed papers (n=48,393) are available in CSV format here. <br>For more information, please visit our main repository:https://github.com/smangul1/good.software<br>
DOI: 10.6084/m9.figshare.7641083.v3
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Raw Data

description: We downloaded open access papers via PubMed from 10 systems and computational biology journals. We provide in this repository raw data in XML format. <br>Our approach to extract software links from the downloaded papers and verify the archival stability of links is described in the Methods section of the paper. Timeout links were manually verified. Links extracted from the abstracts and the body of the surveyed papers (n=48,393) are available in CSV format here. <br>For more information, please visit our main repository:https://github.com/smangul1/good.software<br>
DOI: 10.7284/108736
title: Fluorometer data collected during research cruise EN493 using a Turner 10-AU instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103258
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN493 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111965
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN493 using a Trimble NT-300D instrument system onboard the platform RV Endeavor
DOI: 10.7284/108731
title: Gyrocompass data collected during research cruise EN493 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108732
title: Gyrocompass data collected during research cruise EN493 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7640798
title: Supplemental Figures and Tables for Lung Fluid Proteome in Premature Infants

description: Supplemental data for " <b>Proteome of Lung Fluid in Premature Infants and Relationship to Respiratory Outcome</b>" Ballard et al<br>
DOI: 10.6084/m9.figshare.7640798.v1
title: Supplemental Figures and Tables for Lung Fluid Proteome in Premature Infants

description: Supplemental data for " <b>Proteome of Lung Fluid in Premature Infants and Relationship to Respiratory Outcome</b>" Ballard et al<br>
DOI: 10.7284/107361
title: Singlebeam Echosounder data collected during research cruise EN493 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7640648
title: Lake_Croche_2011-2012.zip

description: Data on ammonia oxidation rates and other environmental variables collected in Lake Croche (QC,CA) in 2011-2012 as part of a MSc thesis.<br>
DOI: 10.6084/m9.figshare.7640648.v1
title: Lake_Croche_2011-2012.zip

description: Data on ammonia oxidation rates and other environmental variables collected in Lake Croche (QC,CA) in 2011-2012 as part of a MSc thesis.<br>
DOI: 10.7284/108734
title: Speedlog data collected during research cruise EN493 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7640456
title: Genome assembly and annotation files for Solenodon paradoxus

description: This repository contains flat text files for the <i>Solenodon paradoxus</i> genome assembly and annotation. A FASTA file is provided for the raw genome assembly (before NCBI submission) produced from Discovar. Annotation files were all produced using this assembly. For the annotation, a raw GFF annotation file from MAKER2 is included for the record. Two more GFF files are included that have the repeat elements and gene annotations parsed, respectively. Two FASTA files containing the gene annotation transcript and protein sequences are also provided. The sequence headers have been renamed with sequential numbered transcript/protein numbers. A lookup table has been provided that associates these numbers with the raw MAKER IDs, which are present in the GFF files. Sequence headers also contain homology information inferred from reciprocal best-BLAST or stringent one-way BLAST searches against related mammalian genome assemblies. The results of these searches, which were used to rename sequences, are included as a homology table. Please see the associated publication for more information. Additional publication data are accessioned in other locations, which are documented at the following webpage: https://darencard.github.io/solPar/.
DOI: 10.7284/108733
title: TSG (Thermosalinograph) data collected during research cruise EN493 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108735
title: TSG (Thermosalinograph) data collected during research cruise EN493 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107259
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN494 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26180/5c50f527ba912
title: Chirp-Encoding-3D-K-Space-Data

description: This contains MRI k-space data for 3d MPRAGE and suseptibility weighted 3d GRE sequences for the paper:<br>Pawar K, Chen Z, Zhang J, Shah NJ, Egan GF. Application of compressed sensing using chirp encoded 3D GRE and MPRAGE sequences. International Journal of Imaging Systems and Technology. 2020 Feb 3.<br>The data is available for two different encoding schemes (i) Fourier encoding and (ii) Chirp encoding. Two matlab code files are available to read the data.<br><br>
DOI: 10.6084/m9.figshare.7640396
title: Representative OTUs based on 16S sRNA sequence

description: Representative OTUs based on 16S sRNA sequence.Clustering done using MOTHUR software
DOI: 10.6084/m9.figshare.7640384
title: Prospective cohort of AIDS patients screened for cryptococcal antigenaemia, pre-emptively treated and followed in Brazil

description: This study aimed to estimate the prevalence of cryptococcal antigenemia and predictors of CrAg positivity in PLHAs with CD4 &lt;200 cells/μL in the midwest region of Brazil (state of Goiás) and outcomes.<br>
DOI: 10.7284/108742
title: Fluorometer data collected during research cruise EN494 using a Turner 10-AU instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7640396.v1
title: Representative OTUs based on 16S sRNA sequence

description: Representative OTUs based on 16S sRNA sequence.Clustering done using MOTHUR software
DOI: 10.7284/103259
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN494 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107362
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN494 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111964
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN494 using a Trimble NT-300D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108737
title: Gyrocompass data collected during research cruise EN494 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108738
title: Gyrocompass data collected during research cruise EN494 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107363
title: Singlebeam Echosounder data collected during research cruise EN494 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108740
title: Speedlog data collected during research cruise EN494 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108739
title: TSG (Thermosalinograph) data collected during research cruise EN494 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108741
title: TSG (Thermosalinograph) data collected during research cruise EN494 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107229
title: Multiplexed data collected during research cruise EN495 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor
DOI: 10.7284/103260
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN495 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7639985
title: low resolution run

description: low resolution run
DOI: 10.6084/m9.figshare.7639985.v1
title: low resolution run

description: low resolution run
DOI: 10.6084/m9.figshare.7639898
title: A microphysiological model of the bronchial airways reveals the interplay of mechanical and biochemical signals in bronchospasm

description: Raw data and source data to generate the figures and statistics in the manuscript. Data in the Excel worksheet is labeled.
DOI: 10.7284/107364
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN495 using a Furuno GP-90D instrument system onboard the platform RV Endeavor
DOI: 10.7284/111963
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN495 using a Trimble NT-300D instrument system onboard the platform RV Endeavor
DOI: 10.6084/m9.figshare.7639883
title: Telemedicine SecBPMN2 Model

description: SecBPMN2 model enriched with security, data-minimization and fairness requirements.
DOI: 10.7284/108746
title: Speedlog data collected during research cruise EN495 using a EDO MRQ-4015D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107264
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN496 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107368
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN496 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/108754
title: Fluorometer data collected during research cruise EN496 using a Turner 10-AU instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103261
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN496 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107366
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN496 using a Furuno GP-90D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111962
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN496 using a Trimble NT-300D instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7639703
title: Reinvestigation of a Robotically Revealed Reaction: Raw NMR Data

description: Complete NMR data sets for compounds 2a and 2b. Acquired on a Bruker AVANCE NEO 500 spectrometer equipped with a BBF probe.
DOI: 10.7284/108749
title: Gyrocompass data collected during research cruise EN496 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7639700
title: cartesian bow shock

description: cartesian bow shock
DOI: 10.6084/m9.figshare.7639700.v1
title: cartesian bow shock

description: cartesian bow shock
DOI: 10.7284/108750
title: Gyrocompass data collected during research cruise EN496 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition