cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3211843.08fu
title: SH3211843.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3211844.08fu
title: SH3211844.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1537846.08fu
title: SH1537846.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1537847.08fu
title: SH1537847.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1537848.08fu
title: SH1537848.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3211845.08fu
title: SH3211845.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3211846.08fu
title: SH3211846.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15151/esrf-es-672955872
title: Shear thinning and shear thickening in colloidal suspensions

description: shear thinning and shear thickening are two phenoma commonly observed when colloidal suspensions flow. Shear thinning corresponds to a decrease of the viscosity as the shear rate increases while shear thickening corresponds to an increase of the viscosity as the shear rate increases. Here, we will use a dispersion of carbon black particles (fractal colloidal particles of diameter 70nm) in oil to study the shear thinning effect and a dispersion of fumed silica particles (fractal colloidal particles of diameter 300nm) dispersed in Polypropylene glycol. Time Resolved Ultra Small Angle X-ray Scattering coupled to rheology will be used to monitor the structure of the dispersion along its flow curve. Decreasing the shear rate in shear thinning carbon black dispersions should lead to larger and larger clusters while we believe that it is the contrary in shear thickening fumed silica dispersions.
DOI: 10.15151/esrf-es-666963413
title: Local Structure and Density Measurement of Liquid Fe-S, Fe-C-S Alloys at Planetary Core Conditions

description: This work aims at measuring the liquid structure and density of liquid Fe-S and Fe-C-S alloys at Moon’s core conditions (4-6 GPa, 1300-2000 K) by combined in situ X-ray diffraction and absorption techniques in the Paris Edinburgh cell (PEC). Specifically, the liquid structure will be investigated by angle-dispersive X-ray diffraction, while density will be extracted by the quantitative analysis of both liquid structure and absorption profile. The density obtained by both methods will be compared to verify the robustness of density extracted from liquid structure analysis. Ultimately, a complete density dataset of liquid iron alloys will be established and used to refine thermodynamic solution models based on the mixing properties of end-members and to model Moon’s core density as a function of its composition.
DOI: 10.15151/esrf-es-746123235
title: Feasibility tests of PCT, DCT and TT in Al and Ni alloys

description: Test Topotomo alignment scripts PCT of Ni superalloy samples DCT of pure Ni sample
DOI: 10.15151/esrf-es-666958077
title: Melting of Fe2O3 Hematite up to 20 GPa

description: Hematite (Fe2O3) is one of the most abundant minerals on Earth's surface and in the shallow crust. Hematite is one of the major components of banded iron formations (BIFs) and ironstones and its high-pressure high-temperature (HP-HT) behaviour may therefore have significant consequences for modelling of the earth’s interior as reported in [1]. In spite of such an apparent crucial interest, high pressure melting experiments on this prototype material are lacking. This is why we propose here to investigate HP-HT) behaviour of Fe2O3 hematite using X-Ray diffraction at ID06-LVP ESRF beamline of the ESRF in order to determine in the P-T space: i) the decomposition conditions of Fe2O3 = Fe3O4 + O2, ii) the melting of hematite Fe2O3 (s) = Fe2O3 (l), 3i) potential formation of other oxides as Fe-O P-T phase diagram was recently reported to be richer than previously thought (FeO2, Fe4O5, Fe5O7, Fe25O32, …). Note that our preliminary studies indicate no decomposition at P ≥ 10 GPa.
DOI: 10.21227/9ptx-5d17
title: AndroOBFS: Time-tagged Obfuscated Android Malware Dataset with Family Information

description: With the large-scale adaptation of Android OS and ever-increasing contributions in the Android application space, Android has become the number one target of malware authors. In recent years, a large number of automatic malware detection and classification systems have evolved to tackle the dynamic nature of malware growth using either static or dynamic analysis techniques. Performance of static malware detection methods degrades due to the obfuscation attacks. Although many benchmark datasets are available to measure the performance of malware detection and classification systems, only a single obfuscated malware dataset (PRAGuard) is available to showcase the efficacy of the existing malware detection systems against the obfuscation attacks. PRAGuard contains outdated samples till 2013 and does not represent the latest application categories. Moreover, PRAGuard does not provide the family information for malware because of which PRAGuard can not be used to evaluate the efficacy of the malware family classification systems. Hence, we create and release AndroOBFS, a time-tagged obfuscated malware dataset with familial information spanning over three years from 2018 to 2020.

The AndroOBFS dataset contains 16279 unique real-world obfuscated malware samples in six categories viz. (i) Trivial, (ii) Renaming, (iii) Encryption, (iv) Reflection, (v) Code, and (vi) Mix (a mix of two or more methods from (i) to (v)). Out of 16279 unique obfuscated malware samples, 114579 samples are distributed across 158 families with at least two unique malware samples in each family. We store all the information about obfuscated malware with family in two CSV files; one CSV file corresponds to 16279 samples (16279.csv ) and the other for 14579 familial malware samples (14579.csv). We release this dataset to aid the Android malware study in designing robust and obfuscation resilient malware detection and classification systems.
DOI: 10.6084/m9.figshare.19353977
title: The study of inducing Rhizoctonia solani AG-3 sporulation

description: Findings from this study will help to identify the source of initial fungal infection and provide a theoretical basis for the prevention and control of diseases caused by <i>R. solani</i>.
DOI: 10.6084/m9.figshare.19353977.v1
title: The study of inducing Rhizoctonia solani AG-3 sporulation

description: Findings from this study will help to identify the source of initial fungal infection and provide a theoretical basis for the prevention and control of diseases caused by <i>R. solani</i>.
DOI: 10.5281/zenodo.6351124
title: Raw experimental data and matlab codes for the paper "State-dependent driving : A route to non-equilibrium stationary states"

description: Raw experimental data and matlab codes used for numerical simulation in the paper - "State-dependent driving : A route to non-equilibrium stationary states". The data and codes to generate figures 2, 3 and 5 are available in the folders named "Fig 2", "Fig 3" and "Fig 5" respectively.
DOI: 10.5281/zenodo.6350149
title: Raw experimental data and matlab codes for the paper "State-dependent driving : A route to non-equilibrium stationary states"

description: Raw experimental data and matlab codes used for numerical simulation in the paper - "State-dependent driving : A route to non-equilibrium stationary states". The data and codes to generate figures 2, 3 and 5 are available in the folders named "Fig 2", "Fig 3" and "Fig 5" respectively.
DOI: 10.6084/m9.figshare.19354028.v1
title: Genome assembly of Floccularia luteovirens

description: The Floccularia luteovirens was collected in Qinghai-Tibet Plateau. Then, sequenced and assembled by us.
DOI: 10.6084/m9.figshare.19354037
title: DATA FINAL GESTATIONAL AGE.xlsx

description: This is data about study results that found a significant relationship between the age of first pregnancy and the nutritional status of the child and the mother's practices relating to nutrition. These results provide a new perspective in the prevention of stunting.
DOI: 10.6084/m9.figshare.19354037.v1
title: DATA FINAL GESTATIONAL AGE.xlsx

description: This is data about study results that found a significant relationship between the age of first pregnancy and the nutritional status of the child and the mother's practices relating to nutrition. These results provide a new perspective in the prevention of stunting.
DOI: 10.5281/zenodo.6322818
title: Amyloid-beta 16-22 peptide dimer simulation (150 mM NaCl) with the CHARMM-Drude force field and OpenMM (Run 3)

description: MD simulations of the Amyloid-beta 16-22 dimer at 150 mM NaCl concentration with CHARMM-Drude force field and OpenMM. Initial structure is obtained from CHARMM-GUI. In the initial configuration, two amyloid-beta 16-22 monomers are not interacting. This repository contains the third out of three independent runs. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1. The trajectory is divided into 7 parts: part_1-2 are each 200 ns long; part_3-6 are each 100 ns long, and part_7 is 640 ns long. Frames are saved in every 10 ps.
DOI: 10.5281/zenodo.6322817
title: Amyloid-beta 16-22 peptide dimer simulation (150 mM NaCl) with the CHARMM-Drude force field and OpenMM (Run 3)

description: MD simulations of the Amyloid-beta 16-22 dimer at 150 mM NaCl concentration with CHARMM-Drude force field and OpenMM. Initial structure is obtained from CHARMM-GUI. In the initial configuration, two amyloid-beta 16-22 monomers are not interacting. This repository contains the third out of three independent runs. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1. The trajectory is divided into 7 parts: part_1-2 are each 200 ns long; part_3-6 are each 100 ns long, and part_7 is 640 ns long. Frames are saved in every 10 ps.
DOI: 10.6084/m9.figshare.19354055
title: Data for "Centennial memory of the Arctic Ocean for future Arctic climate recovery in response to a carbon dioxide removal"

description: Data for "Centennial memory of the Arctic Ocean for future Arctic climate recovery in response to a carbon dioxide removal"
DOI: 10.5281/zenodo.6351179
title: Commodity Dataset | Retrieving the National Main Commodity Maps in Indonesia Based on High-Resolution Remotely Sensed Data Using Cloud Computing Platform

description: (Commodity data in raster format) Supplementary materials for “Retrieving the National Main Commodity Maps in Indonesia Based on High-Resolution Remotely Sensed Data Using Cloud Computing Platform” that had been published on Land MDPI (2020). doi:10.3390/land9100377 The data included: 1) Raster data of commodity maps (TIFF Compressed in ZIP) 2) READ ME for the dataset (DOCX) 3) Legend for raster data in ArcGIS Format (LYR)
DOI: 10.5281/zenodo.6351178
title: Commodity Dataset | Retrieving the National Main Commodity Maps in Indonesia Based on High-Resolution Remotely Sensed Data Using Cloud Computing Platform

description: (Commodity data in raster format) Supplementary materials for “Retrieving the National Main Commodity Maps in Indonesia Based on High-Resolution Remotely Sensed Data Using Cloud Computing Platform” that had been published on Land MDPI (2020). doi:10.3390/land9100377 The data included: 1) Raster data of commodity maps (TIFF Compressed in ZIP) 2) READ ME for the dataset (DOCX) 3) Legend for raster data in ArcGIS Format (LYR)
DOI: 10.5281/zenodo.6346734
title: Amyloid-beta 16-22 peptide dimer simulation (150 mM NaCl) with the CHARMM-Drude force field and OpenMM (Run 1)

description: MD simulations of the Amyloid-beta 16-22 dimer at 150 mM NaCl concentration with CHARMM-Drude force field and OpenMM. Initial structure is obtained from CHARMM-GUI. In the initial configuration, two amyloid-beta 16-22 monomers are not interacting. This repository contains the first out of three independent runs. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1. The trajectory is divided into 7 parts: part_1-2 are each 200 ns long; part_3-6 are each 100 ns long, and part_7 is 640 ns long. Frames are saved in every 10 ps.
DOI: 10.5281/zenodo.6346733
title: Amyloid-beta 16-22 peptide dimer simulation (150 mM NaCl) with the CHARMM-Drude force field and OpenMM (Run 1)

description: MD simulations of the Amyloid-beta 16-22 dimer at 150 mM NaCl concentration with CHARMM-Drude force field and OpenMM. Initial structure is obtained from CHARMM-GUI. In the initial configuration, two amyloid-beta 16-22 monomers are not interacting. This repository contains the first out of three independent runs. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1. The trajectory is divided into 7 parts: part_1-2 are each 200 ns long; part_3-6 are each 100 ns long, and part_7 is 640 ns long. Frames are saved in every 10 ps.
DOI: 10.25403/upresearchdata.19322438
title: Community-based ototoxicity monitoring with extended high-frequency audiometry and community health workers for drug-resistant tuberculosis

description: This dataset includes the data collected and stored on an Excel spreadsheet and used for the research project: Community-based ototoxicity monitoring with extended high-frequency audiometry and community health workers for drug-resistant tuberculosis.
DOI: 10.25403/upresearchdata.19322438.v1
title: Community-based ototoxicity monitoring with extended high-frequency audiometry and community health workers for drug-resistant tuberculosis

description: This dataset includes the data collected and stored on an Excel spreadsheet and used for the research project: Community-based ototoxicity monitoring with extended high-frequency audiometry and community health workers for drug-resistant tuberculosis.
DOI: 10.5281/zenodo.6322791
title: Amyloid-beta 16-22 peptide dimer simulation (150 mM NaCl) with the CHARMM-Drude force field and OpenMM (Run 2)

description: MD simulations of the Amyloid-beta 16-22 dimer at 150 mM NaCl concentration with CHARMM-Drude force field and OpenMM. Initial structure is obtained from CHARMM-GUI. In the initial configuration, two amyloid-beta 16-22 monomers are not interacting. This repository contains the second out of three independent runs. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1. The trajectory is divided into 7 parts: part_1-2 are each 200 ns long; part_3-6 are each 100 ns long, and part_7 is 640 ns long. Frames are saved in every 10 ps.
DOI: 10.5281/zenodo.6322790
title: Amyloid-beta 16-22 peptide dimer simulation (150 mM NaCl) with the CHARMM-Drude force field and OpenMM (Run 2)

description: MD simulations of the Amyloid-beta 16-22 dimer at 150 mM NaCl concentration with CHARMM-Drude force field and OpenMM. Initial structure is obtained from CHARMM-GUI. In the initial configuration, two amyloid-beta 16-22 monomers are not interacting. This repository contains the second out of three independent runs. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1. The trajectory is divided into 7 parts: part_1-2 are each 200 ns long; part_3-6 are each 100 ns long, and part_7 is 640 ns long. Frames are saved in every 10 ps.
DOI: 10.5281/zenodo.6346265
title: Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 3)

description: Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the third independent simulation runs out of three. The system does not contain any ions. Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.
DOI: 10.5281/zenodo.6346264
title: Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 3)

description: Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the third independent simulation runs out of three. The system does not contain any ions. Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps. All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.