cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/v16jul
title: Roseberry (East) British Columbia. 1:50,000. Map Sheet 082K03, ed. 1, 1962

description: This is a georeferenced raster image of a printed paper map of the Roseberry, British Columbia region (Sheet No. 082K03), published in 1962. It is the first edition in a series of maps, which show both natural and man-made features such as relief, spot heights, administrative boundaries, secondary and side roads, railways, trails, wooded areas, waterways including lakes, rivers, streams and rapids, bridges, buildings, mills, power lines, terrain, and land formations. This map was published in 1962 and the information on the map is current as of 1953. Maps were produced by Natural Resources Canada (NRCan) and it's preceding agencies, in partnership with other government agencies. &lt;b&gt;Please note:&lt;/b&gt; image / survey capture dates can span several years, and some details may have been updated later than others. Please consult individual map sheets for detailed production information, which can be found in the bottom left hand corner. Original maps were digitally scanned by McGill Libraries in partnership with Canadiana.org, and georeferencing for the maps was provided by the University of Toronto Libraries and Eastview Corporation.
description: National Topographic System
description: EPSG Code: NAD27 / UTM zone 11N (EPSG:26711)
description: Maps were produced with the cooperation of various Federal Government Agencies starting in the 1940s and continuing into the present. The map series provides national coverage of Canada, and is based on the National Topographic System (NTS). Each 1:50 000 scale map covers an area approximately 1,000 square kilometres. Levels of government as well as private business use maps at this scale for flood control, forest fire control, real estate planning, development of natural resources, environmental issues, right-of-way, highway planning, and depiction of crop areas.
DOI: 10.5683/sp3/p7runn
title: Roseberry (West) British Columbia. 1:50,000. Map Sheet 082K03, ed. 1, 1962

description: This is a georeferenced raster image of a printed paper map of the Roseberry, British Columbia region (Sheet No. 082K03), published in 1962. It is the first edition in a series of maps, which show both natural and man-made features such as relief, spot heights, administrative boundaries, secondary and side roads, railways, trails, wooded areas, waterways including lakes, rivers, streams and rapids, bridges, buildings, mills, power lines, terrain, and land formations. This map was published in 1962 and the information on the map is current as of 1953. Maps were produced by Natural Resources Canada (NRCan) and it's preceding agencies, in partnership with other government agencies. &lt;b&gt;Please note:&lt;/b&gt; image / survey capture dates can span several years, and some details may have been updated later than others. Please consult individual map sheets for detailed production information, which can be found in the bottom left hand corner. Original maps were digitally scanned by McGill Libraries in partnership with Canadiana.org, and georeferencing for the maps was provided by the University of Toronto Libraries and Eastview Corporation.
description: National Topographic System
description: EPSG Code: NAD27 / UTM zone 11N (EPSG:26711)
description: Maps were produced with the cooperation of various Federal Government Agencies starting in the 1940s and continuing into the present. The map series provides national coverage of Canada, and is based on the National Topographic System (NTS). Each 1:50 000 scale map covers an area approximately 1,000 square kilometres. Levels of government as well as private business use maps at this scale for flood control, forest fire control, real estate planning, development of natural resources, environmental issues, right-of-way, highway planning, and depiction of crop areas.
DOI: 10.5683/sp3/nloygj
title: Nakusp (East) British Columbia. 1:50,000. Map Sheet 082K04, ed. 1, 1962

description: This is a georeferenced raster image of a printed paper map of the Nakusp, British Columbia region (Sheet No. 082K04), published in 1962. It is the first edition in a series of maps, which show both natural and man-made features such as relief, spot heights, administrative boundaries, secondary and side roads, railways, trails, wooded areas, waterways including lakes, rivers, streams and rapids, bridges, buildings, mills, power lines, terrain, and land formations. This map was published in 1962 and the information on the map is current as of 1953. Maps were produced by Natural Resources Canada (NRCan) and it's preceding agencies, in partnership with other government agencies. &lt;b&gt;Please note:&lt;/b&gt; image / survey capture dates can span several years, and some details may have been updated later than others. Please consult individual map sheets for detailed production information, which can be found in the bottom left hand corner. Original maps were digitally scanned by McGill Libraries in partnership with Canadiana.org, and georeferencing for the maps was provided by the University of Toronto Libraries and Eastview Corporation.
description: National Topographic System
description: EPSG Code: NAD27 / UTM zone 11N (EPSG:26711)
description: Maps were produced with the cooperation of various Federal Government Agencies starting in the 1940s and continuing into the present. The map series provides national coverage of Canada, and is based on the National Topographic System (NTS). Each 1:50 000 scale map covers an area approximately 1,000 square kilometres. Levels of government as well as private business use maps at this scale for flood control, forest fire control, real estate planning, development of natural resources, environmental issues, right-of-way, highway planning, and depiction of crop areas.
DOI: 10.5683/sp3/isuqcu
title: Nakusp (West) British Columbia. 1:50,000. Map Sheet 082K04, ed. 1, 1962

description: This is a georeferenced raster image of a printed paper map of the Nakusp, British Columbia region (Sheet No. 082K04), published in 1962. It is the first edition in a series of maps, which show both natural and man-made features such as relief, spot heights, administrative boundaries, secondary and side roads, railways, trails, wooded areas, waterways including lakes, rivers, streams and rapids, bridges, buildings, mills, power lines, terrain, and land formations. This map was published in 1962 and the information on the map is current as of 1953. Maps were produced by Natural Resources Canada (NRCan) and it's preceding agencies, in partnership with other government agencies. &lt;b&gt;Please note:&lt;/b&gt; image / survey capture dates can span several years, and some details may have been updated later than others. Please consult individual map sheets for detailed production information, which can be found in the bottom left hand corner. Original maps were digitally scanned by McGill Libraries in partnership with Canadiana.org, and georeferencing for the maps was provided by the University of Toronto Libraries and Eastview Corporation.
description: National Topographic System
description: Maps were produced with the cooperation of various Federal Government Agencies starting in the 1940s and continuing into the present. The map series provides national coverage of Canada, and is based on the National Topographic System (NTS). Each 1:50 000 scale map covers an area approximately 1,000 square kilometres. Levels of government as well as private business use maps at this scale for flood control, forest fire control, real estate planning, development of natural resources, environmental issues, right-of-way, highway planning, and depiction of crop areas.
description: EPSG Code: NAD27 / UTM zone 11N (EPSG:26711)
DOI: 10.15468/dl.pnyw8q
title: Occurrence Download

description: A dataset containing 9837072 species occurrences available in GBIF matching the query:
{
 "BasisOfRecord" : [
 "is Fossil"
 ]
}

 The dataset includes 9837072 records from 538 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046616-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3j7-t8l-cr7
title: †Stephanophyllia nysti Milne Edwards & Haime, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3vh-54p-9q1
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/30a-ajr-fk5
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jhx-23f-evy
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fnc-lh4-96q
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hxe-gc7-tas
title: †Discocyclina Gümbel, 1870

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kkl-m8w-97t
title: †Chonetes Fischer de Waldheim, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/606-pdv-gr7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/trs-1a4-zs6
title: Vidrioceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/69a-8tk-7ae
title: Anasibirites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fy0-4yw-brc
title: †Arcestes tacitus von Mojsisovics, 1875

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qkz-fbr-pd9
title: Juvavites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0dh-dkm-skt
title: Helictites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gta-kph-trn
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vnh-qfp-da5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wbh-maj-cep
title: †Stacheoceras tridens (Rothpletz, 1892)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8jm-gjz-r6a
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mld-ja1-qpy
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1d2-y17-844
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/98e-9yt-s8h
title: Latirus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2pe-4q5-qmb
title: †Cladiscites beyrichi Welter, 1914

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/01s-xkc-rlz
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h2f-wqm-56w
title: †Placosmilia columbella Oppenheim, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/17f-aea-g07
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6zt-4ey-wpg
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l73-gns-epa
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ay1-qwd-8rw
title: Tegillarca granosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s90-904-dm1
title: Bochianites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3de-91p-1z7
title: †Nummulites perforatus (Montfort, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3yv-t46-7hz
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rfj-xgl-fa3
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nvg-e3c-58m
title: †Hypocladiscites subaratus (Mojsisovics, 1896)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r6f-vve-0xb
title: †Dictyaraea micrantha Reuss, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8n5-99k-ybc
title: Aspidites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/je9-m4s-pq6
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n89-y9z-202
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w2k-2te-s5h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2d4-vgm-dqq
title: Indonesites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/58h-szf-mpv
title: †Lepidocyclina canellei Lemoine & Douvillé, 1904

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bhf-7yr-vsv
title: Gen. indet. sp. indet.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sy5-g8b-w0g
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jnj-s25-245
title: Psammechinus miliaris (P.L.S. Müller, 1771)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.t4cuw8
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vetiveria Thouars ex Virey, 1827"
 ]
}

 The dataset includes 229 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003441-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21919425
title: biopsy_RNA.h5ad

description: scRNA-seq of colon biopsies from healthy controls and patients with ulcerative colitis on aminosalicylates or vedolizumab. Seurat RNA object (.rds) and anndata (.h5ad) are provided.Addendum: 4/28/25, uploaded a new .h5ad file with additional raw counts and processed layers
DOI: 10.6084/m9.figshare.21919425.v2
title: biopsy_RNA.h5ad

description: scRNA-seq of colon biopsies from healthy controls and patients with ulcerative colitis on aminosalicylates or vedolizumab. Seurat RNA object (.rds) and anndata (.h5ad) are provided.Addendum: 4/14/25, uploaded a new .h5ad file with additional raw counts layer
DOI: 10.25345/c56q1sv92
title: MassIVE MSV000097918 - GNPS Purified Recombinant His-HvGKEc Band in Gel
title: Recombinant H. volcanii Glycerol Kinase expressed in E.coli BL21 DE3 (HvGKEc) using the plasmid pET15b+glpK in LB Amp. The protein was initially eluted in 50mM HEPES buffer, 2M NaCl. The sample was resuspended in 2X laemmli sample buffer and run in the SDS gel using 1X SDS buffer. The sampled was fixed, the gel was stained with bio-safe commassie overnight, and the band was analyzed.
DOI: 10.5281/zenodo.15468354
title: Predicting multiomics histopathology features with surface parameterizations

description: To improve patient stratification and therapeutic response of colorectal cancer, computational pathology has enabled clinical-grade decision makings, for example, MSI prediction and CMS classification. Prior models and training settings have been largely based on natural image domain, which differs from histopathology data. To mitigate the inductive bias, we introduced surface parameterization, a geometric mapping from the surface to a suitable domain, to transform whole slide images into fix-sized squares using conformal energy minimization (CEM) and stretch energy minimization (SEM) algorithms. These transformations are tissue-perceptive by enhancing the region of interest, e.g., cancerous areas, to improve model performance. We validated the transformation at patch-level classification and multiomics prediction tasks, and found that it can beat the original slides of AUROC in a data-efficient manner. For instance, the AUROC of MSI prediction was 0.87 for CEM and SEM with reduced training set, surpassing the original slides of 0.70. To achieve real-world clinical translation, we also recruited 17 CRC patients and predicted their CMS calls using the transformation. The concordance with expression-based classifier could reach up to 47.1% for CEM and 41.2% for SEM, surpassing the original slides of 29.4%. As a proof-of-concept, we also cultured patient-derived organoids to infer relationship between the CMS and organoid morphologies. We assessed the morphological subtypes, i.e., cystic and solid organoids, via image-based profiling and assigned them to CMS classification, with more cystic organoids preferring CMS3 subtype. This organoid phenotypic feature may be integrated into CMS and improve the tissue differentiation evaluation. Overall, our method has provided new shed on the data processing of computational pathology and been proved the SOTA performance at multiomics prediction.
description: This dataset was released as a demo for reference purposes and only contains CEM/SEM-transformed images. The original images can be obtained from TCGA.
DOI: 10.5281/zenodo.15468355
title: Predicting multiomics histopathology features with surface parameterizations

description: To improve patient stratification and therapeutic response of colorectal cancer, computational pathology has enabled clinical-grade decision makings, for example, MSI prediction and CMS classification. Prior models and training settings have been largely based on natural image domain, which differs from histopathology data. To mitigate the inductive bias, we introduced surface parameterization, a geometric mapping from the surface to a suitable domain, to transform whole slide images into fix-sized squares using conformal energy minimization (CEM) and stretch energy minimization (SEM) algorithms. These transformations are tissue-perceptive by enhancing the region of interest, e.g., cancerous areas, to improve model performance. We validated the transformation at patch-level classification and multiomics prediction tasks, and found that it can beat the original slides of AUROC in a data-efficient manner. For instance, the AUROC of MSI prediction was 0.87 for CEM and SEM with reduced training set, surpassing the original slides of 0.70. To achieve real-world clinical translation, we also recruited 17 CRC patients and predicted their CMS calls using the transformation. The concordance with expression-based classifier could reach up to 47.1% for CEM and 41.2% for SEM, surpassing the original slides of 29.4%. As a proof-of-concept, we also cultured patient-derived organoids to infer relationship between the CMS and organoid morphologies. We assessed the morphological subtypes, i.e., cystic and solid organoids, via image-based profiling and assigned them to CMS classification, with more cystic organoids preferring CMS3 subtype. This organoid phenotypic feature may be integrated into CMS and improve the tissue differentiation evaluation. Overall, our method has provided new shed on the data processing of computational pathology and been proved the SOTA performance at multiomics prediction.
description: This dataset was released as a demo for reference purposes and only contains CEM/SEM-transformed images. The original images can be obtained from TCGA.
DOI: 10.15468/dl.fjdzhz
title: Occurrence Download

description: A dataset containing 3932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rubus corchorifolius L.fil.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3932 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009244-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rd7wy
title: Occurrence Download

description: A dataset containing 1791795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Psilachnum tami (Lamy) Dennis, Diaporthe scandens Sacc. & Speg., Tagiades nestus (Felder, 1860), Loxura atymnus (Cramer, 1782), Harpedona marginata Distant, 1904, Chrysocharis pubens Delucchi, 1954, Euthalia monina Fabricius, 1787, Euthalia nais, Gonodonta bidens Geyer, 1832, Scopelodes contracta Walker, 1855, Pyrosis undulosa (Walker, 1855), Tenuipalpus pacificus Baker, 1945, Stephanitis takeyai Drake & Maa, 1955, Dichomeris intensa Meyrick, 1913, Gonodonta biarmata Guenée, 1852, Patania chlorophanta (Butler, 1878), Syssphinx molina Cramer, 1781, Limassolla dangjinensis Oh & Jung, 2020, Limassolla hebeiensis Cai, Liang & Wang, 1992, Limassolla koreana Hossain, Kwon, Suh & Kwon, 2019, Synanthedon tipuliformis (Clerck, 1759), Zosterops simplex Swinhoe, 1861, Hypocala andremona Stoll, Rousettus madagascariensis G.Grandidier, 1928, Curruca melanocephala (J.F.Gmelin, 1789), Bephratelloides ablusus Grissell & Foster, 1996, Nezara antennata Scott, 1874, Dasypus novemcinctus Linnaeus, 1758, Agrilus crinicornis Horn, 1891, Agrilus diospyroides Knull, 1942, Neotibicen lyricen lyricen, Hypsoropha hormos Hübner, 1818, Hypsoropha monilis Fabricius, 1777, Ursus americanus eremicus Merriam, 1904, Parectromoides varipes (Girault, 1915), Anagyrus fujikona Tachikawa, 1963, Coccophagus gurneyi Compere, 1929, Blastothrix sericea (Dalman, 1820), Microterys sylvius (Dalman, 1820), Volucella elegans (Loew, 1862), Andrena tenuistriata Pérez, 1895, Eucera nigrilabris Lepeletier, 1841, Andrena binominata Smith, 1853, Ceranisus lepidotus Graham, 1963, Xanthorhoe fluctuata (Linnaeus, 1758), Nemophora cupriacella Hübner, 1822, Bombylius atriceps Loew, 1863, Baryscapus americanus (Ashmead, 1888), Aphis ochropus Koch, 1854, Phomopsis dipsaci (Cooke) Grove)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1791795 records from 1214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009236-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29436140
title: <b>Climate-driven patterns of global tree longevity</b>

description: Dataset used for the study"<b>Climate-driven patterns of global tree longevity</b>"Published in Communications Earth and Enviornment, byJiani Gao, Keyan Fang, Jing Ming Chen, Jinbao Li, Sergio Rossi, Deliang Chen, Hans W. Linderholm, Jesús Julio Camarero, Jan Esper, Nicole Davi, Tsun Fung Au and Zhengtang Guo<br>