cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.endw4e
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ctenotus lancelini"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059655-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8b8e3k
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gekko badenii"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059656-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrfunx
title: Occurrence Download

description: A dataset containing 31320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eschrichtius robustus",
 "Year 1980-2025"
 ]
}

 The dataset includes 31320 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059657-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs2tjq
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Craspedocephalus puniceus"
 ]
}

 The dataset includes 107 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059658-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ep3ka
title: Occurrence Download

description: A dataset containing 538085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus pinaster",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 538085 records from 780 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059646-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9w5uu
title: Occurrence Download

description: A dataset containing 1116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ornithuroscincus noctua"
 ]
}

 The dataset includes 1116 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059659-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nz8cc
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "StateProvince is Huila",
 "TaxonKey is Centrolenidae"
 ]
}

 The dataset includes 102 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059660-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bb7sh
title: Occurrence Download

description: A dataset containing 359135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is one of (Europe, Africa)",
 "OccurrenceStatus is Present",
 "TaxonKey is Olea europaea"
 ]
}

 The dataset includes 359135 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059647-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e79hab
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neltuma pallida",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 836 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059661-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/00007346
title: Phase 1/2a Study of Double-Immune Suppression Blockade By Combining a CSF1R Inhibitor (PLX3397) With An Anti-PD-1 Antibody (Pembrolizumab) To Treat Advanced Melanoma And Other Solid Tumors

description: The goal of this clinical research study is to learn how PLX3397 and pembrolizumab work together to affect cancer cells. PLX3397 is designed to target the receptor for CSF1 (CSF1R). Pembrolizumab is designed to block the interaction between the receptor PD-1 and molecules that bind PD-1. In this study, PLX3397 and pembrolizumab are being given together in order to study their combined effects on patients' immune responses to their tumors. Tumor-specific immune responses have been shown to kill cancer cells and/or to stop tumors from growing. Part 1 of the study (dose-escalation phase) will establish the safest dose of PLX3397 to be given in combination with pembrolizumab. Part 2 of the study (expansion phase) will include an evaluation of efficacy of this combination in the following tumor types:   -  Advanced melanoma: prior anti-PD-1/PD-L1 therapy but never responded   -  Advanced melanoma: prior anti-PD-1/PD-L1 therapy and responded but later progressed as defined by irRECIST while on therapy   -  Non-small cell lung cancer   -  Ovarian cancer   -  Gastrointestinal Stromal Tumor (GIST)   -  Squamous cell cancer of the head and neck
DOI: 10.25934/pr00007857
title: Cutaneous immune-related adverse events of immunotherapy medications in the treatment of cancers and association with survival.

description: The project background: Immune checkpoint inhibitors (ICIs) are typical immunotherapy drugs, a type of cancer treatment that helps your immune system fight cancer. As an immune checkpoint blockade, ICIs block immune checkpoints from taking the brakes off of cancer-fighting T cells. ICIs are the most important innovations in oncology therapeutics and have improved the treatment landscape of advanced malignancies. It has been estimated that in 2019 over 200 thousand patients were eligible for treatment with ICI therapy annually in the US alone. However, despite the efficacy of ICIs, immune-related adverse events (irAEs) occur in more than a third of all treated patients and are associated with lasting morbidity, mortality, and impaired quality of life, of which cutaneous irAEs (cirAEs, irAEs relating to or affecting the skin) are the most frequently reported toxic effects, occurring in 20% to 40% of all treated patients. Actually, it has been reported that cirAEs are the most common side effect secondary to immunotherapy, presented as both local reaction in skin and/or systemic poisoning.
Necessity of the research: The indications of ICIs in cancer treatment have expanded, so a growing number of patients will be exposed to immunotherapy. In turn, an increasing number and severity of cirAEs will occur if not intervened upon. However, prior studies examining these toxicities in detail have considered only the presentation of events evaluated by dermatologists. The associations between cirAEs and survival outcomes remain underexplored across care settings.
How the research will add to medical science or patient care: Fully categorizing the spectrum of cirAEs encountered in the context of immune checkpoint blockade and understanding the association between cirAEs and overall survival will help to tailor therapy and manage these side effects most effectively.
How the research will be conducted: This research will enroll all clinical trials in Vivli database that involves ICIs therapy of cancer. The types of cirAEs and management, overall survival will be recorded and analyzed.
What design and methods you have you chosen and why: Cohort study design will be applied in this study. Cox proportional hazards model (a statistical method to analyze the effect of several risk factors on survival, or the time it takes for a specific event to happen) will be performed to determine the prognostic association of cirAEs with overall survival.
DOI: 10.15468/dl.n3v24n
title: Occurrence Download

description: A dataset containing 598378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 35.0",
 "DecimalLatitude is less than or equal to 40.0",
 "DecimalLongitude is greater than or equal to -95.0",
 "DecimalLongitude is less than or equal to -90.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 598378 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059652-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/h4765smg4s
title: Honokiol

description: In this study, we repoort the protective effect of ursolic HONOKIOL (HKL) on vascular calcification in chronic kidney disease. To elucidate the molecular mechanism underlying the anti-vascular calcification effect of HKL, we performed RNA-seq to identify the gene expresion under HKL treatmment.
DOI: 10.17632/h4765smg4s.1
title: Honokiol

description: In this study, we repoort the protective effect of ursolic HONOKIOL (HKL) on vascular calcification in chronic kidney disease. To elucidate the molecular mechanism underlying the anti-vascular calcification effect of HKL, we performed RNA-seq to identify the gene expresion under HKL treatmment.
DOI: 10.17632/d64fcb5jyc
title: Nucleotide-Derived Bacterial Alarmones Attenuation of the Induction of Type-I Interferon Responses in a Murine Macrophage Reporter Cell Line

description: The stringent response is a well-studied phenomenon in many bacterial systems and regulates resource-consuming activities such as transcription, translation, and replication. The stringent response is a well-conserved signaling framework, as are the nucleotide-derived signaling mediators, collectively referred to as (p)ppGpp or as alarmones. There is a wealth of research evaluating nucleotide-derived alarmone signaling in bacterial models, however, their potential to modulate innate immune signaling has not yet been evaluated. Several common pathogen-synthesized molecules, such as lipopolysaccharide (LPS) and cyclic-di-AMP (c-di-AMP), act as pathogen-associated molecular patterns (PAMPs), which are common patterns that alert the innate immune system of bacterial infection. The goal of this work is to elucidate the impact of (p)ppGpp on innate immune signaling. To explore this, RAW-Dual cells were incubated with guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp), two well-studied nucleotide-derived alarmones found in many different pathogenic bacteria, as well as with GTP. Both ppGpp and pppGpp were able to significantly reduce the expression of secreted luciferase in RAW-Dual cells in a dose-dependent manner, indicating a reduction of the interferon-stimulated regulatory elements (ISREs). Neither alarmone impacted secreted embryonic alkaline phosphatase (SEAP) secretion, which reports for NF-kB activation. This is the first work to suggest that nucleotide-derived alarmones produced by bacteria may impact an arm of innate immunity responsible for type-I interferon secretion.
DOI: 10.17632/c64rnmbwzc
title: CKS2 is overexpressed in high-grade and recurrent meningiomas and functions as an oncogene via the CKS2/miR-26a/miR-101a axis

description: This data includes lists of the commonly dysregulated genes among different grades of meningioma (Grade 3 vs Grade 1; Grade 3 vs Grade 2; Grade 2 vs Grade 1) and recurrent vs non-recurrent cases in at least 2 or more datasets, obtained after multi-GEO dataset analysis including 6 datasets. Four of these studies (GSE43290, GSE16581, GSE16181, and GSE74385) were microarray-based, whereas two (GSE101638 and GSE183653) used high-throughput sequencing for gene expression analysis.
DOI: 10.17632/d64fcb5jyc.1
title: Nucleotide-Derived Bacterial Alarmones Attenuation of the Induction of Type-I Interferon Responses in a Murine Macrophage Reporter Cell Line

description: The stringent response is a well-studied phenomenon in many bacterial systems and regulates resource-consuming activities such as transcription, translation, and replication. The stringent response is a well-conserved signaling framework, as are the nucleotide-derived signaling mediators, collectively referred to as (p)ppGpp or as alarmones. There is a wealth of research evaluating nucleotide-derived alarmone signaling in bacterial models, however, their potential to modulate innate immune signaling has not yet been evaluated. Several common pathogen-synthesized molecules, such as lipopolysaccharide (LPS) and cyclic-di-AMP (c-di-AMP), act as pathogen-associated molecular patterns (PAMPs), which are common patterns that alert the innate immune system of bacterial infection. The goal of this work is to elucidate the impact of (p)ppGpp on innate immune signaling. To explore this, RAW-Dual cells were incubated with guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp), two well-studied nucleotide-derived alarmones found in many different pathogenic bacteria, as well as with GTP. Both ppGpp and pppGpp were able to significantly reduce the expression of secreted luciferase in RAW-Dual cells in a dose-dependent manner, indicating a reduction of the interferon-stimulated regulatory elements (ISREs). Neither alarmone impacted secreted embryonic alkaline phosphatase (SEAP) secretion, which reports for NF-kB activation. This is the first work to suggest that nucleotide-derived alarmones produced by bacteria may impact an arm of innate immunity responsible for type-I interferon secretion.
DOI: 10.17632/c64rnmbwzc.1
title: CKS2 is overexpressed in high-grade and recurrent meningiomas and functions as an oncogene via the CKS2/miR-26a/miR-101a axis

description: This data includes lists of the commonly dysregulated genes among different grades of meningioma (Grade 3 vs Grade 1; Grade 3 vs Grade 2; Grade 2 vs Grade 1) and recurrent vs non-recurrent cases in at least 2 or more datasets, obtained after multi-GEO dataset analysis including 6 datasets. Four of these studies (GSE43290, GSE16581, GSE16181, and GSE74385) were microarray-based, whereas two (GSE101638 and GSE183653) used high-throughput sequencing for gene expression analysis.
DOI: 10.17632/s7rjw8nnvm
title: A requirement driven process mining

description: This repository contains the code and data for the paper “A requirement-driven method for process mining based on model-driven engineering” 

It includes: 
- The script "code.ipynb" /Colab notebooks
- The datasets "BPI_Challenge_2013_incidents.xes"
DOI: 10.17632/4dxvzbf3s7
title: Supplementary data for "Establishing a spatial framework for investigating PFAS in wild game animals: evidence from wild boar livers in Brandenburg, Germany"

description: This collection of datasets includes (i) concentrations of selected per- and polyfluoroalkyl substances (PFAS) measured in liver samples from 164 wild boars harvested in Brandenburg, Germany; (ii) land-use characterization of 18 hunting districts in Brandenburg based on aggregated CORINE Land Cover (CLC) 2018 data; and (iii) distances between these hunting districts and presumptive PFAS contamination sources as reported by the PFAS Data Hub. The PFAS Data Hub compiles PFAS-related information from multiple sources and represents a continuation of the Forever Pollution Project (CNRS Humanities & Social Sciences, 2024). Detailed descriptions of the datasets and variables are provided in the accompanying README files.
DOI: 10.17632/s7rjw8nnvm.2
title: A requirement driven process mining

description: This repository contains the code and data for the paper “A requirement-driven method for process mining based on model-driven engineering” 

It includes: 
- The script "code.ipynb" /Colab notebooks
- The datasets "BPI_Challenge_2013_incidents.xes"
DOI: 10.17632/4dxvzbf3s7.2
title: Supplementary data for "Establishing a spatial framework for investigating PFAS in wild game animals: evidence from wild boar livers in Brandenburg, Germany"

description: This collection of datasets includes (i) concentrations of selected per- and polyfluoroalkyl substances (PFAS) measured in liver samples from 164 wild boars harvested in Brandenburg, Germany; (ii) land-use characterization of 18 hunting districts in Brandenburg based on aggregated CORINE Land Cover (CLC) 2018 data; and (iii) distances between these hunting districts and presumptive PFAS contamination sources as reported by the PFAS Data Hub. The PFAS Data Hub compiles PFAS-related information from multiple sources and represents a continuation of the Forever Pollution Project (CNRS Humanities & Social Sciences, 2024). Detailed descriptions of the datasets and variables are provided in the accompanying README files.
DOI: 10.15468/dl.ncgggj
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Codonanthe carnosa (Gardner) Hanst."
 ]
}

 The dataset includes 119 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151838-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1rneqp
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Trachemys callirostris (Gray, 1856)"
 ]
}

 The dataset includes 389 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002910-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwt8tc
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Marsupina bufo (Bruguière, 1792)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 100 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059306-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g47h76
title: Occurrence Download

description: A dataset containing 21003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus arctos Linnaeus, 1758",
 "Year 1901-2021"
 ]
}

 The dataset includes 21003 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0261919-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i3xrmh
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratoides lanata (Pursh) J.T.Howell"
 ]
}

 The dataset includes 77 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023127-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytm72t
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum talijevii Klokov"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042346-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n6s4w
title: Occurrence Download

description: A dataset containing 3622 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kalanchoe delagoensis Eckl. & Zeyh."
 ]
}

 The dataset includes 3622 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267332-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e5fqzl
title: Occurrence Download

description: A dataset containing 5406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clupea pallasii Valenciennes, 1847"
 ]
}

 The dataset includes 5406 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010056-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqsbdk
title: Occurrence Download

description: A dataset containing 16470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaoboridae",
 "Year 1000-2020"
 ]
}

 The dataset includes 16470 records from 174 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0265303-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fphvst
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolandia pinnatifida (Thunb.) J.C.Manning & Cron"
 ]
}

 The dataset includes 132 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062437-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dku9k2
title: Occurrence Download

description: A dataset containing 12739 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Coracias garrulus Linnaeus, 1758"
 ]
}

 The dataset includes 12739 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007522-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.