cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19962683.v1
title: The causal relationships between obstructive sleep apnea and elevated CRP and TNF-α protein levels

description: Obstructive sleep apnea (OSA) and inflammation are closely related. This study aimed to evaluate the associations and causal effect between C-reactive protein (CRP) and tumour necrosis factor-alpha (TNF-α) levels andOSA. Pooled analysis was conducted to compare the expression differences of CRP and TNF-α between OSA patients with different severity and controls, and between continuous positive airway pressure (CPAP) and non-CPAP interventions for OSA patients. Using published GWAS summary statistics, we conducted a bidirectional two-sample Mendelian Randomization (MR) to estimate the causal relationships between CRP and TNF-α levels and OSA risk. Effect estimates were evaluated using inverse-variance weighted (IVW) as primary method, and several other MR methods as sensitivity analysis. Both TNF-α (WMD [95%CI] = 5.86 [4.80–6.93] pg/ml, <i>p</i> &lt; .00001) and CRP (WMD [95%CI] = 2.66 [2.15–3.17] mg/L, <i>p</i> &lt; .00001), showed a significant increase in OSA patients compared with controls and this increasing trend was associated with OSA severity. Besides, compared to blank control (non-CPAP), CPAP treatment can reduce high TNF-α (WMD [95%CI]= −4.44 [−4.81, −4.07]pg/ml, <i>p</i> &lt; .00001) and CRP (WMD [95%CI]= −0.91 [−1.65, −0.17] mg/l, <i>p</i> = .02) in OSA. Moreover, the primary MR analysis by IVW showed that OSA was the genetically predicted cause of elevated CRP (estimate: 0.095; 95% CI, [0.010–0.179]; <i>p</i> = .029) using six SNPs as the instrument variable, which were repeated by weighted median (estimate: 0.053; 95% CI, [0.007, 0.100]; <i>p</i> =.024) and MR RAPS (estimate: 0.109; 95% CI, [0.079, 0.140]; <i>p</i> = 1.98x10<sup>−12</sup>). Besides, the causal effect from elevated CRP on increased OSA risk was almost significant by IVW (OR:1.053; 95% CI, [1.000, 1.111]; <i>p</i> = .053). However, there were no causal associations between TNF-α and OSA from both directions. Increased CRP and TNF-α were associated with OSA severity and sensible to CPAP treatment. Also, OSA had a suggestive causal effect on elevated CRP.
DOI: 10.6084/m9.figshare.21196820
title: Combining metaphase cytogenetics with single nucleotide polymorphism arrays can improve the diagnostic yield and identify prognosis more precisely in myelodysplastic syndromes

description: Myelodysplastic syndromes (MDS) encompass a group of heterogeneous haematopoietic stem cell malignancies characterised by ineffective haematopoiesis, cytological aberrations, and a propensity for progression to acute myeloid leukaemia. Diagnosis and disease prognostic stratification are much based on genomic abnormalities. The traditional metaphase cytogenetics analysis (MC) can detect about 40–60% aberrations. Single-nucleotide polymorphism arrays (SNP-A) karyotyping can detect copy number variations with a higher resolution and has a unique advantage in detection of copy number neutral loss of heterozygosity (CN-LOH). Combining these two methods may improve the diagnostic efficiency and accuracy for MDS. We retrospectively analysed the data of 110 MDS patients diagnosed from January 2012 to December 2019 to compare the detection yield of chromosomal abnormalities by MC with by SNP-A, and the relationship between chromosomal abnormalities and prognosis. Our results showed that SNP-A improved the detection yield of chromosomal aberrations compared with MC (74.5 vs. 55.5%, <i>p</i> &lt; .001). In addition, the positive yield could be further improved by combining MC with SNP-A to 77.3%, compared with MC alone. Univariate analysis showed that age &gt;65 years, bone marrow blasts ≥5%, with acquired CN-LOH, new aberrations detected by SNP-A, TGA value &gt; the median (81.435 Mb), higher risk by IPSS-R-MC, higher risk by IPSS-R-SNP-A all had poorer prognosis. More critically, multivariable analysis showed that age &gt;65 years and higher risk by IPSS-R-SNP-A were independent predictors of inferior OS in MDS patients. The combination of MC and SNP-A based karyotyping can further improve the diagnostic yield and provide more precise prognostic stratification in MDS patients. However, SNP-A may not completely replace MC because of its inability to detect balanced translocation and to detect different clones. From a practical point of view, we recommend the concurrent use of SNP-A and MC in the initial karyotypic evaluation for MDS patients on diagnosis and prognosis stratification.KEY MESSAGESSNP-A based karyotyping can further improve the MDS diagnostic yield and provide more precise prognostic stratification in MDS patients.Acquired CN-LOH is a characteristic chromosomal aberration of MDS, which should be integrated to the diagnostic project of MDS.The concurrent use of SNP-A and MC in the initial karyotypic evaluation for MDS patients can be recommended. SNP-A based karyotyping can further improve the MDS diagnostic yield and provide more precise prognostic stratification in MDS patients. Acquired CN-LOH is a characteristic chromosomal aberration of MDS, which should be integrated to the diagnostic project of MDS. The concurrent use of SNP-A and MC in the initial karyotypic evaluation for MDS patients can be recommended.
DOI: 10.6084/m9.figshare.21196820.v2
title: Combining metaphase cytogenetics with single nucleotide polymorphism arrays can improve the diagnostic yield and identify prognosis more precisely in myelodysplastic syndromes

description: Myelodysplastic syndromes (MDS) encompass a group of heterogeneous haematopoietic stem cell malignancies characterised by ineffective haematopoiesis, cytological aberrations, and a propensity for progression to acute myeloid leukaemia. Diagnosis and disease prognostic stratification are much based on genomic abnormalities. The traditional metaphase cytogenetics analysis (MC) can detect about 40–60% aberrations. Single-nucleotide polymorphism arrays (SNP-A) karyotyping can detect copy number variations with a higher resolution and has a unique advantage in detection of copy number neutral loss of heterozygosity (CN-LOH). Combining these two methods may improve the diagnostic efficiency and accuracy for MDS. We retrospectively analysed the data of 110 MDS patients diagnosed from January 2012 to December 2019 to compare the detection yield of chromosomal abnormalities by MC with by SNP-A, and the relationship between chromosomal abnormalities and prognosis. Our results showed that SNP-A improved the detection yield of chromosomal aberrations compared with MC (74.5 vs. 55.5%, <i>p</i> &lt; .001). In addition, the positive yield could be further improved by combining MC with SNP-A to 77.3%, compared with MC alone. Univariate analysis showed that age &gt;65 years, bone marrow blasts ≥5%, with acquired CN-LOH, new aberrations detected by SNP-A, TGA value &gt; the median (81.435 Mb), higher risk by IPSS-R-MC, higher risk by IPSS-R-SNP-A all had poorer prognosis. More critically, multivariable analysis showed that age &gt;65 years and higher risk by IPSS-R-SNP-A were independent predictors of inferior OS in MDS patients. The combination of MC and SNP-A based karyotyping can further improve the diagnostic yield and provide more precise prognostic stratification in MDS patients. However, SNP-A may not completely replace MC because of its inability to detect balanced translocation and to detect different clones. From a practical point of view, we recommend the concurrent use of SNP-A and MC in the initial karyotypic evaluation for MDS patients on diagnosis and prognosis stratification.KEY MESSAGESSNP-A based karyotyping can further improve the MDS diagnostic yield and provide more precise prognostic stratification in MDS patients.Acquired CN-LOH is a characteristic chromosomal aberration of MDS, which should be integrated to the diagnostic project of MDS.The concurrent use of SNP-A and MC in the initial karyotypic evaluation for MDS patients can be recommended. SNP-A based karyotyping can further improve the MDS diagnostic yield and provide more precise prognostic stratification in MDS patients. Acquired CN-LOH is a characteristic chromosomal aberration of MDS, which should be integrated to the diagnostic project of MDS. The concurrent use of SNP-A and MC in the initial karyotypic evaluation for MDS patients can be recommended.
DOI: 10.5281/zenodo.17076151
title: Force and position datasets for "Crackling Dynamics in the Mechanical Response of Knitted Fabrics"

description: Experimental data associated with the article "Crackling Dynamics in the Mechanical Response of Knitted Fabrics":

Poincloux, S., Adda-Bedia, M., & Lechenault, F. (2018). Crackling dynamics in the mechanical response of knitted fabrics. Physical Review Letters, 121(5), 058002. https://doi.org/10.1103/PhysRevLett.121.058002

Please refer to the "Read me.txt" for details on the available data files.
DOI: 10.5281/zenodo.17076152
title: Force and position datasets for "Crackling Dynamics in the Mechanical Response of Knitted Fabrics"

description: Experimental data associated with the article "Crackling Dynamics in the Mechanical Response of Knitted Fabrics":

Poincloux, S., Adda-Bedia, M., & Lechenault, F. (2018). Crackling dynamics in the mechanical response of knitted fabrics. Physical Review Letters, 121(5), 058002. https://doi.org/10.1103/PhysRevLett.121.058002

Please refer to the "Read me.txt" for details on the available data files.
DOI: 10.15468/dl.vxr8t9
title: Occurrence Download

description: A dataset containing 1333297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Emberiza schoeniclus (Linnaeus, 1758)"
 ]
}

 The dataset includes 1333297 records from 721 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041501-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70375
title: Redemption tidings, vol. 51, nos. 1-52, 2 Jan. - 25 Dec. 1975

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.w4h5ps
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corgatha nitens",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 147 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128455-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0luyur
title: Occurrence Download

description: A dataset containing 9279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1990-2018",
 "Geometry POLYGON((-13.71094 33.72434,6.67969 33.72434,6.67969 48.45835,-13.71094 48.45835,-13.71094 33.72434))",
 "HasCoordinate is true",
 "TaxonKey is Talpa europaea Linnaeus, 1758",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9279 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003045-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h28a8z
title: Occurrence Download

description: A dataset containing 913829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.088 52.338,13.761 52.338,13.761 52.675,13.088 52.675,13.088 52.338))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 913829 records from 379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041522-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70765
title: Redemption tidings, vol. 51, nos. 1-52, 2 Jan. - 25 Dec. 1975

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.azeu8x
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Horisme stratata (Wileman, 1911)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129386-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-141629
title: When God makes a missionary: being the life story of Edgar Mahon, 1936

description: [description english/roman)] William F.P. Burton's biography of Edgar Mahon who worked as a missionary in South Africa [147 pages].
DOI: 10.15468/dl.ae7fd6
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora sphaerocarpa Triana & Planch."
 ]
}

 The dataset includes 213 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041528-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8mpei
title: Occurrence Download

description: A dataset containing 474 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is Portugal",
 "Country is Andorra",
 "Country is France",
 "Country is Belgium",
 "Country is Italy",
 "Country is Switzerland"
 ]
 },
 "TaxonKey is Plusia festucae (Linnaeus, 1758)"
 ]
}

 The dataset includes 474 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003045-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swhz8j
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthodoris nanega Burn, 1969"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076306-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-70165
title: Redemption tidings, vol. 51, nos. 1-52, 2 Jan. - 25 Dec. 1975

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.7mmvzh
title: Occurrence Download

description: A dataset containing 9049157 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "EstablishmentMeans is NATIVE",
 "Year 1980-2019",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9049157 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003045-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v9kje5
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Manis javanica Desmarest, 1822"
 ]
}

 The dataset includes 193 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041493-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-71333
title: Redemption tidings, vol. 50, nos. 1-52, 3 Jan. - 26 Dec. 1974

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.58h8q6
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aclis gulsonae (W.Clark, 1850)"
 ]
}

 The dataset includes 135 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076328-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edqgvq
title: Occurrence Download

description: A dataset containing 816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphorbia pekinensis Rupr."
 ]
}

 The dataset includes 816 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041468-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-71437
title: Redemption tidings, vol. 50, nos. 1-52, 3 Jan. - 26 Dec. 1974

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.a442ph
title: Occurrence Download

description: A dataset listing the 374464 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 374464 records were derived from 723 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126112-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive153915.20230509.8.1
title: Vibrio cholerae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153918.20230509.8.1
title: Mogibacterium neglectum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153919.20230509.8.1
title: Arcobacter butzleri

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153921.20230509.8.1
title: Acinetobacter parvus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153922.20230509.8.1
title: Lactobacillus paracasei

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153923.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153924.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153925.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153926.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153927.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153928.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153929.20230509.8.1
title: Aggregatibacter actinomycetemcomitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153930.20230509.8.1
title: Staphylococcus lugdunensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153931.20230509.8.1
title: Enterococcus gallinarum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153932.20230509.8.1
title: Listeria monocytogenes

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153933.20230509.8.1
title: Klebsiella oxytoca

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153934.20230509.8.1
title: Corynebacterium pseudogenitalium

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153935.20230509.8.1
title: Francisella tularensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153936.20230509.8.1
title: Paenibacillus phoenicis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153937.20230509.8.1
title: Microbacterium laevaniformans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153938.20230509.8.1
title: Enterococcus hirae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153949.20230509.8.1
title: Actinomyces graevenitzii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153950.20230509.8.1
title: Agrococcus lahaulensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153951.20230509.8.1
title: Eggerthella lenta

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153952.20230509.8.1
title: Actinomyces graevenitzii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153953.20230509.8.1
title: Burkholderia multivorans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive153954.20230509.8.1
title: Staphylococcus xylosus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.