cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dagbtv
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boiga irregularis (Bechstein, 1802)",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009619-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gs734
title: Occurrence Download

description: A dataset containing 951 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia tricolor Schltdl. & Cham."
 ]
}

 The dataset includes 951 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007235-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14208696
title: Data on mating experiment in the ant Cataglyphis cursor, Doums et al.

description: The data set is the raw data of a submitted paper 'Differential worker aggression of males from varied origin supports outbreeding avoidance in a low dispersing ant". The experimental design is described in the manuscript. But briefly, dyadic choice tests were performed using the ant Cataglyphis cursor. A young queen were given two males, one from the same population (sympatric) and one from a different population (allopatric) in absence and presence of workers. The number of mating attempts, matings and their duration and the duration of workers aggression were measured. 

Variables descriptions are provided in the file.
DOI: 10.5281/zenodo.14208695
title: Data on mating experiment in the ant Cataglyphis cursor, Doums et al. V2

description: The data set is the raw data of a submitted paper 'Differential worker aggression of males from varied origin supports outbreeding avoidance in a low dispersing ant". The experimental design is described in the manuscript. But briefly, dyadic choice tests were performed using the ant Cataglyphis cursor. A young queen were given two males, one from the same population (sympatric) and one from a different population (allopatric) in absence and presence of workers. The number of mating attempts, matings and their duration and the duration of workers aggression were measured. 

In this new V2 version, we provide the frequency of mating attempts per minute to account for a different set-up (some tests lasted five minutes and other ten minutes). In the V1, we estimated the number of mating attempts only on the first five minutes of the tests (for the tests lasting 10 minutes). 

Variables descriptions are provided in the file.
DOI: 10.5281/zenodo.15548103
title: Data on mating experiment in the ant Cataglyphis cursor, Doums et al. V2

description: The data set is the raw data of a submitted paper 'Differential worker aggression of males from varied origin supports outbreeding avoidance in a low dispersing ant". The experimental design is described in the manuscript. But briefly, dyadic choice tests were performed using the ant Cataglyphis cursor. A young queen were given two males, one from the same population (sympatric) and one from a different population (allopatric) in absence and presence of workers. The number of mating attempts, matings and their duration and the duration of workers aggression were measured. 

In this new V2 version, we provide the frequency of mating attempts per minute to account for a different set-up (some tests lasted five minutes and other ten minutes). In the V1, we estimated the number of mating attempts only on the first five minutes of the tests (for the tests lasting 10 minutes). 

Variables descriptions are provided in the file.
DOI: 10.15468/dl.vdkhgu
title: Occurrence Download

description: A dataset containing 37155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Anthyllis vulneraria L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 37155 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007234-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.6fd1n
title: Data from: Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes

description: Incomplete knowledge of biodiversity remains a stumbling block for
 conservation planning, and even occurs within globally important
 Biodiversity Hotspots. Although technical advances have boosted the power
 of molecular biodiversity assessments, the link between DNA sequences and
 species and the analytics to discriminate entities, remain crucial. Here,
 we present an analysis of the first DNA barcode library for the freshwater
 fish fauna of the Mediterranean Biodiversity Hotspot (526 spp.), with
 virtually complete species coverage (498 spp., 98% extant species). In
 order to build an identification system supporting conservation, we
 compared species determination by taxonomists to multiple clustering
 analyses of DNA barcodes for 3165 specimens. The congruence of barcode
 clusters with morphological determination was strongly dependent on the
 method of cluster delineation, but was highest with the GMYC model-based
 approach (83% of all species recovered as GMYC entity). Overall,
 genetic-morphological discontinuities suggest the existence of up to 64
 previously unrecognized candidate species. We found reduced identification
 accuracy when using the entire DNA-barcode database, compared to analyses
 on databases for individual river catchments. This scale effect has
 important implications for barcoding assessments, and suggests that fairly
 simple identification pipelines provide sufficient resolution in local
 applications. We calculated EDGE (Evolutionarily Distinct and Globally
 Endangered) scores in order to identify candidate species for conservation
 priority, and argue that the evolutionary content of barcode data can be
 used to detect priority species for future IUCN assessments. We show that
 large-scale barcoding inventories of complex biotas are feasible and
 contribute directly to the evaluation of conservation priorities.
description: COI sequence
 alignmentDNA sequence alignment
 containing all 3165 individuals. Sequence labels contain genus, species,
 drainage system, country of origin, field or museum ID, and sample
 ID.3165dryad.fasta
DOI: 10.15468/dl.v4c4hq
title: Occurrence Download

description: A dataset containing 86523246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-20 -38,55 -38,55 38,-20 38,-20 -38))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 86523246 records from 531 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001581-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.jg909
title: Data from: Folding wings like a cockroach: a review of transverse wing folding ensign wasps (Hymenoptera: Evaniidae: Afrevania and Trissevania)

description: We revise two relatively rare ensign wasp genera, whose species are
 restricted to Sub-Saharan Africa: Afrevania and Trissevania. Afrevania
 longipetiolata sp. nov., Trissevania heatherae sp. nov., T. hugoi sp.
 nov., T. mrimaensis sp. nov. and T. slideri sp. nov. are described, males
 and females of T. anemotis and Afrevania leroyi are redescribed, and an
 identification key for Trissevaniini is provided. We argue that
 Trissevania mrimaensis sp. nov. and T. heatherae sp. nov. populations are
 vulnerable, given their limited distributions and threats from mining
 activities in Kenya. We hypothesize that these taxa together comprise a
 monophyletic lineage, Trissevaniini, tr. nov., the members of which share
 the ability to fold their fore wings along two intersecting fold lines.
 Although wing folding of this type has been described for the hind wing of
 some insects four-plane wing folding of the fore wing has never been
 documented. The wing folding mechanism and the pattern of wing folds of
 Trissevaniini is shared only with some cockroach species (Blattodea). It
 is an interesting coincidence that all evaniids are predators of cockroach
 eggs. The major wing fold lines of Trissevaniini likely are not homologous
 to any known longitudinal anatomical structures on the wings of other
 Evaniidae. Members of the new tribe share the presence of a coupling
 mechanism between the fore wing and the mesosoma that is composed of a
 setal patch on the mesosoma and the retinaculum of the fore wing. While
 the setal patch is an evolutionary novelty, the retinaculum, which
 originally evolved to facilitate fore and hind wing coupling in
 Hymenoptera, exemplifies morphological exaptation. We also refine and
 clarify the Semantic Phenotype approach used in previous taxonomic
 revisions and explore the consequences of merging new with existing data.
 The way that semantic statements are formulated can evolve in parallel,
 alongside improvements to the ontologies themselves.
description: Data matrix for
 TrissevaniiniWeb Ontology Language
 (OWL) representation of data matrix for Trissevaniinitrissevania_matrix.owlSemantic annotation for TrissevaniiniWeb Ontology Language (OWL) representation of semantic annotation for Trissevaniinitrissevania_phenotypes.owl
DOI: 10.5061/dryad.vj969
title: Data from: Endocranial anatomy of a new fossil porpoise (Odontoceti: Phocoenidae) from the Pliocene San Diego Formation of California

description: The Pliocene fossil porpoise SDSNH 65276 has extremely elongate mandibular
 morphology, unlike that of any marine amniote, and is superficially most
 similar to the living bird species known as skimmers (Rynchops sp.).
 Endocasts of the pterygoid sinuses and endocranial cavity were digitally
 segmented from high-resolution X-ray CT scans of the specimen to explore
 internal anatomy of functionally and phylogenetically important anatomical
 features of this specimen and odontocetes in general. The sinuses are
 similar in volume and shape to extant porpoise species, but the dorsal
 extension of the preorbital lobes are particularly elongate as in the
 harbor porpoise (Phocoena phocoena). The cranial endocast also shows
 similarities with extant porpoises, but has much deeper interhemispheric
 fissures, which are filled by ossified meninges, particularly a deep falx
 cerebri and shallower tentorium cerebelli. Ossifications of these parts of
 the meninges may reflect faster angular accelerations of the head, deeper
 diving ability, or both. Penetrations of the endocranial cavity for
 cranial nerves and blood vessels are like those of extant porpoises. The
 internal skull morphology of this unique delphinoid sheds additional light
 both on its phylogenetic affinities and novel odontocete adaptations.
description: Supplemental Data
 2Three-dimensional PDF of
 digitally extracted right pterygoid sinus of the extinct porpoise
 Semirostrum ceruttii, SDSNH 65276.SUPPLEMENTARY FIGURE
 1.pdfSupplemental Data
 3Three-dimensional PDF of
 digitally extracted left pterygoid sinus of the extinct porpoise
 Semirostrum ceruttii, SDSNH 65276.SUPPLEMENTARY FIGURE
 2.pdfSupplemental Data
 4Three-dimensional pdf of
 digitally extracted whole cranial endocast of the extinct porpoise
 Semirostrum ceruttii, SDSNH 65276.SUPPLEMENTARY FIGURE
 3.pdfSupplemental Data
 1Measurements of the
 pterygoid sinuses of the extinct porpoise Semirostrum ceruttii, SDSNH
 65276, in mm unless otherwise indicated.Supplementary Table
 1.docx
DOI: 10.5061/dryad.55d46
title: Data from: Quarternary deep-sea Ostracode taxonomy of ocean drilling program site 980, Easterm North Atlantic Ocean

description: Ocean Drilling Program (ODP) Holes 980 B and C, Feni Drift at the eastern
 slope of the Rockall Plateau, eastern North Atlantic, were examined for
 late Quaternary deep-sea ostracode taxonomy. Nineteen genera and 32
 species were examined and (re-)illustrated with high-resolution scanning
 electron microscopy images. One new species Cytheropteron paramassoni n.
 sp. is described and one new name Eucytherura zehali is proposed for
 Eucytherura hazeli Yasuhara et al., 2009. This study provides updated
 taxonomic information for deep-sea ostracode genera and species from the
 eastern North Atlantic, which is an important baseline for application of
 deep-sea ostracodes to paleoceanographical reconstructions and
 paleoecological studies in this region.
description: High resolution Fig.
 2High
 resolution Fig. 2Yasuhara_fig2.tifHigh resolution Fig. 3High resolution Fig. 3Yasuhara_fig3.tifHigh resolution Fig. 4High resolution Fig. 4Yasuhara_fig4-rev.tifHigh resolution Fig. 5High resolution Fig. 5Yasuhara_fig5.tifHigh resolution Fig. 6High resolution Fig. 6Yasuhara_fig6.tifHigh resolution Fig. 7High resolution Fig. 7Yasuhara_fig7.tifHigh resolution Fig. 8High resolution Fig. 8Yasuhara_fig8-rev.tif
DOI: 10.5061/dryad.05f5h
title: Data from: Global distribution maps of the Leishmaniases

description: The leishmaniases are vector-borne diseases that have a broad global
 distribution throughout much of the Americas, Africa and Asia. Despite
 representing a significant public health burden, our understanding of the
 global distribution of the leishmaniases remains vague, reliant upon
 expert opinion and limited to poor spatial resolution. A global assessment
 of the consensus of evidence for leishmaniasis was performed at a
 sub-national level by aggregating information from a variety of sources. A
 database of records of cutaneous and visceral leishmaniasis occurrence was
 compiled from published literature, online reports, strain archives and
 GenBank accessions. These, with a suite of biologically relevant
 environmental covariates, were used in a boosted regression tree modelling
 framework to generate global environmental risk maps for the
 leishmaniases. These high-resolution evidence-based maps can help direct
 future surveillance activities, identify areas to target for disease
 control and inform future burden estimation efforts.
description: Global Evidence
 Consensus for Visceral LeishmanisisA survey of the evidence
 for the presence or absence of visceral leishmaniasis in each
 province/state in the world (Admin 1)Evidence Consensus for Visceral
 Leishmanisis 0321.docxGlobal Evidence
 Consensus for Cutaneous LeishmaniasisA survey of the evidence
 for the presence or absence of cutaneous leishmaniasis in each
 province/state in the world (Admin 1)Evidence Consensus for
 Cutaneous Leishmaniasis
 0321.docxDatabase of cutaneous
 leishmaniasis occurrencesA database containing
 cutaneous leishmaniasis occurrences used in the boosted regression trees
 analysisCL_final_dataset.xlsxDatabase of visceral leishmaniasis occurrencesA database containing visceral leishmaniasis occurrences used in the boosted regression trees analysisVL_final_dataset.xlsxPopulations living in areas of environmental risk of LeishmaniasisThese data tables reported the estimated populations living in areas of environmental risk of cutaneous leishmaniasis (CL) or visceral leishmaniasis (VL). For a full methodology and indications of geographic range of these populations, please consult the full publication that this dataset is associated with: Pigott et al. (2014) “Global distribution maps of the leishmaniases”Populations_at_risk_CLVL.docx
DOI: 10.5061/dryad.390m3
title: Data from: Beyond the print - virtual paleontology in science publishing, outreach and education

description: Virtual paleontology unites a variety of computational techniques and
 methods for the visualization and analysis of fossils. Due to their great
 potential and increasing availability, these methods have become immensely
 popular in the last decade. However, communicating the wealth of digital
 information and results produced by the various techniques is still
 exacerbated by traditional methods of publication. Transferring and
 processing three-dimensional information, such as interactive models or
 animations, into scientific publications still poses a challenge. Here, we
 present different methods and applications to communicate digital data in
 academia, outreach and education. Three-dimensional PDFs, QR codes,
 anaglyph stereo imaging, and rapid prototyping—methods routinely used in
 the engineering, entertainment, or medical industries—are outlined and
 evaluated for their potential in science publishing and public engagement.
 Although limitations remain, these are simple, mostly cost-effective, and
 powerful tools to create novel and innovative resources for education,
 public engagement, or outreach.
description: FIGURE
 1£D
 PDF of the digital surface model of the skull and dermal shoulder girdle
 of Dunkleosteus terrelli. 3D content can be activated by clicking on the
 figure.
DOI: 10.5061/dryad.1rh77
title: Data from: User-friendly and evidence-based tool to evaluate probability of eradication of aquatic non-indigenous species

description: 1. The gap between practitioners and conservation or environmental
 management science is difficult to bridge. Managers sometimes use limited
 scientific information in their decision-making process, mainly because
 they have little time to review primary literature before making a
 decision. Making data readily available to managers is expected to improve
 the overall efficiency of management interventions. Here we present an
 approach to develop user-friendly applications for evidence-based
 management and illustrate the concept by presenting a simple computer
 program designed to evaluate the probability of eradication of aquatic
 non-indigenous species. 2. We conducted a review of case studies that
 attempted to control aquatic non-indigenous species and used a statistical
 model to relate the outcome (eradication or non-eradication) to
 characteristics of the populations and interventions conducted. Based on a
 few key variables, the model returned accurate probabilities of
 eradication as evaluated with a Receiver Operating Characteristic curve
 and jackknife and cross-validation procedures. 3. We packaged the
 statistical model in a user-friendly computer program that can be used by
 managers to 1) rapidly calculate the probability of success of a planned
 intervention with associated uncertainty, 2) compare the success
 probabilities of different possible interventions, and 3) prioritize what
 information should be collected to increase the reliability of estimates.
 4. Synthesis and applications. Our decision-support tool is easy to
 implement, statistically flexible, and could be used for any type of
 conservation or management intervention, given a sufficient number of case
 studies available in the literature. We recommend that scientists develop
 such tools whenever they conduct reviews of effectiveness of intervention.
 This is likely to result in greater use of data by practitioners,
 increased reliability of cost–benefit analyses, and an overall increase in
 efficiency in conservation and environmental management.
description: MIPE data
 setSpreadsheet containing
 the information collated about case studies of attempted control of
 aquatic non-indigenous speciesUser Manual MIPE
 v2_4User manual containing
 the necessary information to install and use MIPEMIPE v 2.4
 codeFile containing the
 compressed Matlab code used to create MIPEMIPE_v2_4Executable file of MIPE
DOI: 10.5061/dryad.rg82f
title: Data from: Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree species Alnus glutinosa

description: The adaptive potential of tree species to cope with climate change has
 important ecological and economic implications. Many temperate tree
 species experience a wide range of environmental conditions, suggesting
 high adaptability to new environmental conditions. We investigated
 adaptation to regional climate in the drought-sensitive tree species Alnus
 glutinosa (Black alder), using a complementary approach that integrates
 genomic, phenotypic and landscape data. A total of 24 European populations
 were studied in a common garden and through landscape genomic approaches.
 Genotyping-By-Sequencing was used to identify SNPs across the genome,
 resulting in 1990 SNPs. Although a relatively low percentage of putative
 adaptive SNPs was detected (2.86% outlier SNPs), we observed clear
 associations among outlier allele frequencies, temperature, and plant
 traits. In line with the typical drought avoiding nature of A. glutinosa,
 leaf size varied according to a temperature gradient and significant
 associations with multiple outlier loci were observed, corroborating the
 ecological relevance of the observed outlier SNPs. Moreover, the lack of
 isolation-by-distance, the very low genetic differentiation among
 populations and the high intra-population genetic variation all support
 the notion that high gene exchange combined with strong environmental
 selection promotes adaptation to environmental cues.
description: SNP, environmental and
 phenotypic dataTab 1: raw SNP data
 (also monomorphic) - Tab 2: Polymorphic SNP data in Genalex format - Tab
 3: Phenotypic data measured in the common garden - Tab 4: Phenotypic data
 at the level of the population - Tab 5: environmental
 dataSNP,
 environmental and trait data.xlsx