cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6136995
title: MorbidGenes-Panel-v2022-02.1

description: <strong>Background</strong>: Identifying clinically relevant genetic variants is crucial for a fast and reliable genetic diagnosis. With exome sequencing now standard, diagnostic labs are in need of a, in principle, to-the-day-accurate list of genes associated with rare diseases. Manual curation efforts are slow and often disease specific, while efforts relying on single sources are too inaccurate and result in too many false-positive genes. <strong>Methods</strong>: We established the MorbidGenes panel based on a list of publicly available databases: OMIM, PanelApp, SysNDD, ClinVar, HGMD and GenCC. A simple logic allows inclusion of genes with sufficient evidence based on a voting algorithm. By providing an API endpoint, users can directly access the list and meta data for all relevant information on their genes of interest. <strong>Results</strong>: The panel currently includes 4,677 genes (v.2022-02.1, as of February 2022) with minimally sufficient evidence on disease causality to classify them as diagnostically relevant. Reproducible filtering and versioning allow the integration into diagnostic pipelines. In-house Implementation successfully removed false positive genes and reduced time requirements in routine exome diagnostics. The panel is updated monthly, and we will integrate novel sources on a regular basis. <strong>Conclusion</strong>: The MorbidGenes panel is a comprehensive and open overview of clinically relevant genes based on a growing list of sources. It supports genetic diagnostics labs by providing diagnostically relevant genes in a QM conform format on a monthly basis with more frequent updates planned. Once genomes are standard, diagnostically relevant non-coding regions will also be included.
DOI: 10.15128/r1n870zq866
title: A motorized rotation mount for fast and reproducible optical polarization control [dataset]

description: Includes dataset and code.
description: We present a simple motorised rotation mount for a half-wave plate that can be used to rapidly change the polarization of light. We use the device to switch a high power laser beam between different optical dipole traps in an ultracold atom experiment. The device uses a stepper motor with a hollow shaft, which allows a beam to propagate along the axis of the motor shaft, minimising inertia and mechanical complexity. A simple machined adapter is used to mount the wave plate. We characterise the performance of the device, focusing on its capability to switch a beam between the output ports of a polarizing beamsplitter cube. We demonstrate a switching time of 15.9(3) ms, limited by the torque of the motor. The mount has a reaction time of 0.52(3) ms, and a rotational resolution of 0.45 degrees. The rotation is highly reproducible, with the stepper motor not missing a step in 2000 repeated tests over 11 hours.
DOI: 10.17632/6ng756hmc2.1
title: Appendix 1.- Database of 159 academic publications related to the use of System Dynamics in Project Management

description: Appendix 1.- Database of 159 academic publications related to the use of System Dynamics in Project Management.
DOI: 10.25810/6yrq-yp38
title: Ozone vertical profiles from MAVEN/IUVS nightside stellar occultations

description: The MAVEN/IUVS stellar occultation data products are publicly available at the NASA planetary data system's atmosphere node. However, previous ozone retrievals are susceptible to false detections. We have re-analysed the mission-wide dataset from March 2015 up to Campaign 42 in January 2022, using a modified algorithm based on Teanby et al. (2019, Icarus 319, 86-98) to filter out detections of ozone that are of less than 2 sigma statistical significance. In this dataset we provide, for each analysed occultation, a) model fits to calibrated L1c transmission spectra, b) retrieved ozone slant density profiles together with 1 sigma upper/detection limits, c) retrieved ozone local density profiles following filtering and vertical inversion, and d) colocated model ozone density profiles generated by the Mars Planetary Climate Model (PCM).
DOI: 10.5281/zenodo.7555111
title: Normalized daily average Schumann resonance (SR) intensity data from 13 to 31 January, 2019

description: Data are provided for the whole globe (T), South America (SA), Africa (AF) and Asia (AS). File prepared by Tamás Bozóki (20 January, 2023)<br> Contact: bozoki.tamas@epss.hu
DOI: 10.6084/m9.figshare.19661070.v1
title: clutch_size_data_2022.csv

description: clutch size data for Pentatomidae species in study
DOI: 10.7298/d557-db75
title: Data from: High-latitude stratospheric aerosol geoengineering may be more effective if injection is limited to spring
DOI: 10.1285/i20705948v14n1p58
title: Does the elimination of work flexibility contribute to reducing wage inequality? Empirical evidence from Ecuador

description: From the empirical point of view, measures that promote work flexibility increase income inequalities and unemployment rates in the long-term, as well as promoting employment precariousness and the informality of the labor sector. The objective of the present work is to investigate the effect on wage inequality of eliminating work flexibility, which was undertaken in Ecuador in 2008. A two-way effect econometric model was applied with panel data. Data from the 21 provinces of Ecuador covering the period of 2007-2018 were obtained from the National Employment, Unemployment and Under-Employment Survey (ENEMDU) of the National Statistical and Census Institute (INEC). The results suggest that the elimination of work flexibility had a significant and negative effect on inequality; the policy was effective in reducing inequality. This result is significant for all the years subsequent to the introduction of these measures, although with variations according to regional and economic characteristics. Policies aimed at reducing inequality should focus on improving workers' bargaining power and on generating an environment that favors increasing levels of formality.
DOI: 10.17188/1186809
title: Materials Data on Co by Materials Project

description: Co is Copper structured and crystallizes in the tetragonal I4/mmm space group. The structure is three-dimensional. Co is bonded to twelve equivalent Co atoms to form a mixture of edge, face, and corner-sharing CoCo12 cuboctahedra. There are eight shorter (2.48 Å) and four longer (2.50 Å) Co–Co bond lengths.
DOI: 10.17188/1190986
title: Materials Data on Fe by Materials Project

description: Fe is Copper structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Fe is bonded to twelve equivalent Fe atoms to form a mixture of corner, edge, and face-sharing FeFe12 cuboctahedra. All Fe–Fe bond lengths are 2.58 Å.
DOI: 10.17188/1309827
title: Materials Data on Cr by Materials Project

description: Cr is Copper structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Cr is bonded to twelve equivalent Cr atoms to form a mixture of edge, face, and corner-sharing CrCr12 cuboctahedra. All Cr–Cr bond lengths are 2.56 Å.
DOI: 10.25900/9y07-4j77
title: OCTOPUS Database v.2: The SahulArch OSL collection (v.2)
DOI: 10.5281/zenodo.7681342
title: Data repository - The role of peatland degradation, protection and restoration for climate change mitigation in the SSP scenarios

description: This datasets provides regional and spatial-explicit gridded data for the analysis presented in the manuscrip "The role of peatland degradation, protection and restoration for climate change mitigation in the SSP scenarios" under review in "Environmental Research: Climate" with reference "ERCL-100126"
DOI: 10.6084/m9.figshare.19661061.v1
title: rank_behaviours.csv

description: behavioural data for: <strong>Partial refuges from biological control due to intraspecific variation in protective host traits</strong>
DOI: 10.6084/m9.figshare.19661064.v1
title: unexposed_eggmass_data.csv

description: dataset for unexposed egg masses
DOI: 10.6084/m9.figshare.19661073.v1
title: exposed_eggmass_data.csv

description: data for exposed egg masses
DOI: 10.6084/m9.figshare.19661079.v1
title: README for code.txt

description: Readme for code used in: <strong>Partial refuges from biological control due to intraspecific variation in protective host traits</strong>
DOI: 10.6084/m9.figshare.23065052
title: Pollenyzer dataset - honey bee pollen samples with scans, photos and laboratory analysis

description: Dataset Description This dataset belongs to paper [1] and contains data for 31 pollen samples from honey bees. Each pollen sample was collected at 24-hour intervals using a pollen trap, scanned, photographed and examined by light microscopy. For each sample the following is available: a high resolution, uncompressed scanner image (1200 dpi) the same image with calibrated colours (professional colour chart) a smartphone photo (Samsung Galaxy S8) the same image with calibrated colours (calibrated by print test strip, see paper) for each pollen sample, a laboratory analysis of the actual plant species contained. In addition, a CSV file is included for each image, which contains the RGB colour and its position for each automatically detected pollen pellet. The colours are differentiated into primary and secondary colours (for more information see [1]). The pollen samples were collected at approximately one-week intervals in Almke, Germany, from two bee colonies. The dataset contains a detailed description of the methodology. References [1] P. Borlinghaus, J. Jung, and R. Odemer, ‘Introducing Pollenyzer: An App for Automatic Determination of Colour Diversity for Corbicular Pollen Loads’, Smart Agricultural Technology, p. 100263, Jun. 2023, doi: 10.1016/j.atech.2023.100263. Link to publication
DOI: 10.7936/zb8w-rj26
title: Simulation of Venus Lightning: Radicals and Electrochemical Processes
DOI: 10.25900/af67-kh16
title: OCTOPUS Database v.2: The SahulArch TL collection (v.2)
DOI: 10.5281/zenodo.7394905
title: Dataset for "Band structures and Z2 invariant of 2D transition metal dichalcogenides from fully relativistic Dirac--Kohn--Sham theory using Gaussian-type orbitals"

description: Two-dimensional (2D) materials exhibit a wide range of remarkable phenomena, many of which owe their existence to the relativistic spin--orbit coupling (SOC). To understand and predict properties of materials containing heavy elements, such as the transition metal dichalcogenides (TMDs), full account of relativistic effects is mandatory in first-principles calculations. We present an all-electron method based on the four-component Dirac Hamiltonian and Gaussian-type orbitals (GTOs) that overcomes complications associated with linear dependencies and ill-conditioned matrices arising when diffuse functions are included in the basis. Until now, there has been no systematic study of the convergence of GTO basis sets for periodic solids neither at the nonrelativistic nor the relativistic level. Here, we provide such a study of relativistic band structures of the 2D TMDs in the hexagonal (2H), tetragonal (1T), and distorted tetragonal (1T') structural phases while focusing on SOC-driven properties (the Rashba splitting and the $\mathbb{Z}_2$ topological invariant). We demonstrate that our approach is valid even if large basis sets with multiple basis functions corresponding to each valence atomic orbital (denoted triple- and quadruple-$\zeta$) are used in the relativistic regime. The method does not require the use of pseudopotentials and provides access to all electronic states within the same framework, paving the way for direct studies of material properties that depend heavily on the electron density near atomic nuclei where relativistic effects and SOC are strongest, such as the parameters of the spin Hamiltonian.
DOI: 10.5281/zenodo.7906862
title: Dataset for JGR Atmospheres manuscript " An Observational Constraint of VOC Emissions for Air Quality Modeling Study in the Pearl River Delta Region"

description: The file includes hourly observations of ground-level ozone (O<sub>3</sub>) and nitrogen dioxide (NO<sub>2</sub>) concentrations at 56 environmental monitoring stations in the Pearl River Delta (PRD) region in China during June 2018. The units are in μg/m<sup>3</sup>.
DOI: 10.25900/gpvr-ay04
title: OCTOPUS Database v.2: The SahulArch Radiocarbon collection (v.2)
DOI: 10.5281/zenodo.7443325
title: Protein structure model predictions for secreted fungal proteins

description: <strong>Dataset A - Alphafold2 prediction output data for 753 secreted proteins of <em>Rhizophagus irregularis </em>DAOM197198</strong>. Gene IDs are taken from the annotation by Yildirir et al. 2021, doi.org/10.1111/nph.17842 <strong>Dataset B - Alphafold2 prediction output data for 10 fungal effectors.</strong><strong> </strong>These are nine effectors from <em>Fusarium oxysporum</em> f. sp.<em> lycopersici</em> and RiSLM from <em>Rhizophagus irregularis</em> as well as their amino acid sequences. Signal peptides and sequences preceding a predicted Kex2 processing site were removed. <strong>Dataset C - Alphafold2 prediction output data for 454 matches of a MycFOLD-HMM search</strong> across the Mycocosm genome database (https://mycocosm.jgi.doe.gov/mycocosm/home) and 36 Glomeromycotina fungal genomes.
description: This work was funded by the Gatsby Charitable Foundation (GAT3395/GLD), the Royal Society (UF160413) and by an ERC Starting Grant (637537).
DOI: 10.17188/1204433
title: Materials Data on Cu by Materials Project

description: Cu is Copper structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Cu is bonded to twelve equivalent Cu atoms to form a mixture of corner, edge, and face-sharing CuCu12 cuboctahedra. All Cu–Cu bond lengths are 2.56 Å.
DOI: 10.17188/1309841
title: Materials Data on Mn by Materials Project

description: Mn is Copper structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Mn is bonded to twelve equivalent Mn atoms to form a mixture of face, edge, and corner-sharing MnMn12 cuboctahedra. All Mn–Mn bond lengths are 2.48 Å.
DOI: 10.17632/48phhtkcj8.1
title: Perseverance MEDA/TIRS aerosol retrievals

description: This file contains retrieval results of aerosol optical depth using observations taken by the Perseverance rover Thermal InfraRed Sensor (TIRS), which is part of the MEDA instrument suite on the rover. The file has 8 columns, which are given in a one-line header:

1. Local True Solar Time (LTST)
2. Total aerosol optical depth
3. Ls (Mars Year 36)
4. Observed IR1 signal from TIRS (W m-2)
5. Observed IR2 signal from TIRS (as an effective temperature)
6. Elevation angle above the horizon of the TIRS field of view
7. Fractional sol number
8. Integer sol number
DOI: 10.5066/p9dza9u2
title: Regional Trends of Isotopic Composition in Total Gaseous Mercury Across the United States

description: The dataset presented here represents the concentrations and stable isotopic composition of gaseous mercury (Hg) for 31 sites across the United States. This national-scale monitoring effort was performed by the National Atmospheric Deposition Program (NADP) and the USGS over a two-year period (March 2016 - May 2018). The network includes a highly diverse set of sites ranging from remote (e.g. Denali National Park, AK and Mauna Loa, HI) to highly urbanized (e.g. Bronx, NY and Boston, MA). Air samples were collected using a custom designed bulk air sampler, in which air was pumped at approximately 1 L/min through particulate and soda lime filters prior to passing through two quartz tubes containing gold coated glass beads where gaseous Hg was collected. Each sampling period was two weeks long. The Hg was thermally desorbed from the gold beads and collected in a liquid oxidizing trap. The total Hg concentration and isotopic composition was determined on this solution. The average total gaseous Hg concentration across sites was 1.23 � 0.28 ng/m3, but higher concentrations were observed at sites closer to known Hg sources, such as Oak Ridge National Lab (6.53 ng/m3). For all sites, the average odd isotope mass independent fractionation (MIF, ?199Hg), an indicator of photochemistry, was -0.20 � 0.07? and had a range of -0.43 to 0.01 ?. Mass dependent fractionation (MDF, ?202Hg), the commonly used isotope ratio for source tracking, was generally positive with a mean value of 0.45 � 0.40?, although intermittent negative MDF was also observed at some sites. Urban sites were consistently lighter in ?202Hg (0.34?) compared to remote background sites (0.65?), potentially indicating differences between emission sources. Though regional differences in odd MIF and MDF were small, we observed a trend showing enrichment of ?202Hg in the northeastern United States, from the Ohio River Valley to remote sites in northern Maine and Nova Scotia, suggesting a shift from localized emission sources to globally transported Hg across this region.
DOI: 10.5281/zenodo.3952460
title: D-PLACE/dplace-data: D-PLACE – the Database of Places, Language, Culture and Environment

description: The data repository for the D-PLACE Project (Database of Places, Language, Culture and Environment)
DOI: 10.5281/zenodo.4061796
title: Tara Pacific ITS2 Symbiodiniaceae data release version 1

description: This data is the result of the primary analysis of the Symbiodiniaceae ITS2 rDNA gene sequencing data collected from all islands as part of the Tara Pacific expedition.The analysis was conducted using SymPortal. A full README is contained within the data upload.
DOI: 10.5281/zenodo.7295677
title: Gust data for Qingdao City, Shandong Province, China from April 27 to June 8, 2021

description: This data set shows gust parameters calculated using Doppler Lidar deployed in Qingdao, Shandong Province, China from April 27 to June 8, 2021.
DOI: 10.5281/zenodo.7599687
title: Dataset of Trucks' Anonymized Recorded Driving and Operation

description: During a period of 12 months, 54 class N3 trucks from four fleets of German fleet operators were equipped with high resolution GPS data loggers. A total of 1.26 million km of driving data has been recorded and constitutes one of the most comprehensive open datasets to date for high-resolution data of heavy commercial vehicles. This dataset provides metadata of recorded tracks as well as high-resolution time series data of the vehicle speed. Its applications include simulation of electrification for heavy commercial vehicles, modeling logistics processes or driving cycle construction.
DOI: 10.5281/zenodo.7874467
title: Dataset associated with "Temporal evolution of dune number density in a barchan dune field"

description: Dataset associated with "Temporal evolution of dune number density in a barchan dune field"
DOI: 10.6084/m9.figshare.22263373.v1
title: Dryad_dataset_Côte_et_al..txt

description: The dataset presents the values of indices, anthropogenic pressures and climatic data.
DOI: 10.7302/55xb-6j65
title: Self-Discovery Module (GUI) for Singular Vectors: The"Greatest Stretch" Method for 2x2 Matrices

description: The object of this project is to provide researchers and students with a tool to allow them to develop an intuitive understanding of singular vectors and singular values.  2x2 matrices A with real entries map circles to ellipses; in particular, unit circles centered at the origin to ellipses centered at the origin.  It is known that the points on the ellipse farthest from the origin correspond to the singular vectors of A.  Users can use the GUI to enter matrices of their choice and explore to visually self-determine the singular vectors/values. 
description: We designed and produced an interactive JavaScript GUI that users can download and use on almost any computer without charge and without the need for any additional software, to visually explore the geometry of real 2x2 matrix mappings, in order to self-determine singular vectors and singular values. (Note that although the file is in .html, it will only work when downloaded to a local machine).
DOI: 10.3886/e184041v1
title: Data and code for: The Common-Probability Auction Puzzle

description: This paper presents a puzzle of the behavior of experimental subjects in what we call common-probability auctions. In common-value auctions, uncertainty is defined over values, while in common-probability auctions, uncertainty is defined over probabilities. We find that in contrast to the substantial overbidding found in common-value auctions, bidding in strategically equivalent common-probability auctions is consistent with Nash equilibrium. In order to explain our results, we run treatments to identify whether our observed difference stems from the way our subjects estimate the value of the object they are bidding for in a competitive environment rather than the way they bid conditional on these valuations. We conclude it is the former.
description: students at New York University.
DOI: 10.5517/ccdc.csd.cc1zvhz9
title: CCDC 1842732: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Mark I. Ogden, Matthew J. McIldowie, Mauro Mocerino|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22104830
title: Data and supplemental material for 'Predicting marine in-situ heat flow using a geospatial machine learning conformal prediction.'

description: Supplemental Data for the Heat Flow Prediction <br> Supplemental files: <br> obs_heat_flow.nc - heat flow observations input dataset <br> /features/* - 13 netCDF files features for the study 100 km^2 equal area resolution (EASE grid) <br> /prediction/rfr_prediction.nc - final prediction for in-situ heat flow <br> /prediction/rfr_confidence_0.682_uncertainty.nc - uncertainty for prediction <br> /prediction/rfr_distance_min.nc - parametric isolation <br> /prediction/rfr_percent_uncertainty.nc - percent uncertainty
DOI: 10.1594/wdcc/hoaps3_pentad
title: Hamburg Ocean Atmosphere Parameters and Fluxes from Satellite Data - HOAPS-3 - 5-days mean

description: Project: Hamburg Ocean Atmosphere Parameters and Fluxes from Satellite Data - For more information see http://www.hoaps.zmaw.de/ Summary: The Hamburg Ocean Atmosphere Parameters and Fluxes from Satellite Data (HOAPS) set is a completely satellite based climatology of precipitation, turbulent heat fluxes and freshwater budget (evaporation minus precipitation) as well as related athmospheric state variables over the global ice free oceans. All variables are derived from SSM/I passive microwave radiometers, except for the SST, which is taken from AVHRR measurements. The dataset includes multi-satellite averages, inter-sensor calibration, and an efficient sea ice detection procedure. Changes in this version are a longer time series, now containing data from 1987 to 2005, a new neural network based precipitation algorithm, and inclusion of the RSMAS/NODC Pathfinder Version 5 SST fields. Additionally a new 85 GHz synthesis procedure has been implemented, making a continuous time series for all parameters for the whole time series possible. All pentad (5-day) mean products are distributed in separate monthly files. The first day of a 5-day average period determines the monthly file wherein it is saved. Each year is subdivided in 73 pentads starting at the same day of the year. During leap years, the twelfth pentad (starting at February 25) is the average of six days. Apart from pentad (5-day) and monthly means on a global 0.5 deg. x 0.5 deg. grid, twice daily multi-satellite composite data on a global 1 x 1 deg. grid are available. For more information see http://www.hoaps.org/.