cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17648647
title: Data repository for the article by Kseniia Bondar, Semyon Cherkes, Ievgen Poliachenko, Vlad Kozak, Roman Kozlenko and Iryna Sheiko by the name " Roman forts in the Northern Black Sea area through the lens of drone-based magnetometry"

description: This is the data repository for the article by Kseniia Bondar, Semyon Cherkes, Ievgen Poliachenko, Vlad Kozak, Roman Kozlenko and Iryna Sheiko by the name " Roman forts in the Northern Black Sea area through the lens of drone-based magnetometry". In this repository the measurement data are stored for further use.

1.    Kamyanka_V_UAV-based_mag_surv_RAW.csv: sample raw UAV-based RTK-corrected magnetic data covering the area marked with the green stripe:

 



 

Column caption descriptions:






1)      Line 



Magnetic profile name





2)      Timestamp__ms_



Timestamp data from MagDrone R3 GPS





3)      Sensor_ID



MagDrone R3 sensor number





4)      Track_ID



Flight profile name





5)      Latitude__В°_



Latitude (deg) in WGS84





6)      Longitude__В°_



Longitude (deg) in WGS84





7)      x        



x (m) in UTM zone 36N with WGS84 datum





8)      y        



y (m) in UTM zone 36N with WGS84 datum





9)      Mag_X__nT_



x component of magnetic recording





10)  Mag_Y__nT_



y component of magnetic recording





11)  Mag_Z__nT_



z component of magnetic recording





12)  Tfa_RAW



Total field of magnetic recording





13)  Dist



Distance along the magnetic profile





 

2.    Tfa_RAW_LPF20_mm25_c3x3n1-cut.grd: final gridded magnetic dataset for the Kamyanka V Roman fort.

 

3.    Mohyla_Tfa_RAW_LPF20_mm50_c3x3n1-cut.grd: final gridded magnetic dataset for the New fort.
DOI: 10.15468/dl.kzs7gw
title: Occurrence Download

description: A dataset containing 21610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nyctibius griseus",
 "Country is Colombia"
 ]
}

 The dataset includes 21610 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044914-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/h5489y3tgv
title: Instances for identical parallel machine scheduling with sequence-dependent setup times, due dates, and internal and external jobs
DOI: 10.17632/h5489y3tgv.1
title: Instances for identical parallel machine scheduling with sequence-dependent setup times, due dates, and internal and external jobs
DOI: 10.15468/dl.en3ey7
title: Occurrence Download

description: A dataset containing 1313 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-110.5188 27.74913, -110.3688 27.74913, -110.3688 27.89913, -110.5188 27.89913, -110.5188 27.74913))"
 ]
}

 The dataset includes 1313 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044916-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/dky3xz9p6w
title: Rundo2025-Non-immersive to highly immersive Virtual Reality: the rele-vance of satisfaction evaluation for people with and without dementia

description: Virtual Reality (VR) encompasses a spectrum of experiences, ranging from non-immersive to highly immersive environments, providing a broad array of tools for cognitive rehabilitation. Assessing satisfaction with non-immersive and immersive devices, such as Cognitive Automatic Virtual Environments (CAVE) and Head-Mounted Displays (HMD), is essential to ensure that the technologies developed are truly accessible and beneficial, taking into account the specific needs and preferences of individuals with dementia. This study aims to explore in detail users’ satisfaction with different types of technological devices. 
A satisfaction questionnaire was developed. Each participant (with and without demen-tia) first completed the initial section of the questionnaire, then engaged with three devices (Touch TV, CAVE, and VR Headset), and finally completed the second section assessing satisfaction with the use of each device.
Overall, no significant differences were found between participants with and without dementia in their satisfaction with the three devices. However, within the group of indi-viduals with dementia, a clear preference for the Touch TV emerged.
The study confirms that it is crucial to consider the type of VR device most preferred by this population. The preference for the Touch TV underscores the importance of usability and interface simplicity in technological devices designed for people with dementia.
DOI: 10.17632/dky3xz9p6w.2
title: Rundo2025-Non-immersive to highly immersive Virtual Reality: the rele-vance of satisfaction evaluation for people with and without dementia

description: Virtual Reality (VR) encompasses a spectrum of experiences, ranging from non-immersive to highly immersive environments, providing a broad array of tools for cognitive rehabilitation. Assessing satisfaction with non-immersive and immersive devices, such as Cognitive Automatic Virtual Environments (CAVE) and Head-Mounted Displays (HMD), is essential to ensure that the technologies developed are truly accessible and beneficial, taking into account the specific needs and preferences of individuals with dementia. This study aims to explore in detail users’ satisfaction with different types of technological devices. 
A satisfaction questionnaire was developed. Each participant (with and without demen-tia) first completed the initial section of the questionnaire, then engaged with three devices (Touch TV, CAVE, and VR Headset), and finally completed the second section assessing satisfaction with the use of each device.
Overall, no significant differences were found between participants with and without dementia in their satisfaction with the three devices. However, within the group of indi-viduals with dementia, a clear preference for the Touch TV emerged.
The study confirms that it is crucial to consider the type of VR device most preferred by this population. The preference for the Touch TV underscores the importance of usability and interface simplicity in technological devices designed for people with dementia.
DOI: 10.15468/dl.yt7qqq
title: Occurrence Download

description: A dataset containing 1238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation)",
 "TaxonKey is Morphnus guianensis",
 "Year 2020-2025"
 ]
}

 The dataset includes 1238 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044917-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/141
title: Raw data for the analysis of the growth kinetics and morphology of methyl stearate crystals growing in n-dodecane, kerosene and toluene

description: Differential Interference Contrast microscopy is used to characterise the growth kinetics and morphology of methyl stearate crystals, growing in three different solvents. The collected experimental data for the growth of these crystals specific faces as a function of supersaturation is presented in the dataset. The complete set of planes delivered through the prediction of the BFDH morphology for methyl stearate crystals using three different sets of unit cell parameters is presented. These planes are organised in groups and analysed using common zone axes methods to identify the most rational crystal lattice and morphology
DOI: 10.17632/n5grwdcgzy.1
title: The Strategic Role of Bamboo as a Sustainable Bioenergy Feedstock: Technical, Economic, and Policy Review

description: The continual rise in global population, depletion of fossil fuel reserves, and escalating environmental challenges have intensified the pursuit of sustainable, renewable, and affordable energy alternatives. Among these, bioenergy has emerged as a practical and promising substitute for fossil-derived fuels and now forms a vital component of the global energy mix. This review examines the potential of bamboo as a renewable lignocellulosic feedstock for producing various forms of bioenergy. It presents an overview of the global bamboo market, cultivation practices, harvesting methods, pretreatment technologies, and the physicochemical properties that make bamboo an attractive biomass resource. The processes for converting bamboo into pellets, briquettes, biochar, bioethanol, bio-oil, biobutanol, syngas, biogas, and biomethane are analyzed in detail. Utilizing bamboo for bioenergy production is cost-effective and sustainable, achieving high conversion efficiency and superior bioenergy yield and quality. However, issues such as deforestation, land and water use conflicts, scalability, limited biomass markets, and inconsistent policies remain major barriers. These challenges can be mitigated through targeted research funding, the development of innovative pretreatment and conversion technologies, genetic improvement of bamboo species, and comprehensive life cycle and sustainability assessments. Strengthened collaboration among academia, industry, and government, supported by robust ethical, legal, and regulatory frameworks, will accelerate the integration of bamboo into the global bioenergy economy.
DOI: 10.17632/nbtx6zhm26
title: Carbon sequestration and spatiotemporal characteristics of microbial communities in karst wetland soils revealed by metagenomic analysis

description: These are the raw data of metagenomic binning, basic soil physical and chemical properties, and soil-related enzyme activities in this study. For details of the sequencing data, please refer to the link.
DOI: 10.17632/nbtx6zhm26.2
title: Carbon sequestration and spatiotemporal characteristics of microbial communities in karst wetland soils revealed by metagenomic analysis

description: These are the raw data of metagenomic binning, basic soil physical and chemical properties, and soil-related enzyme activities in this study. For details of the sequencing data, please refer to the link.
DOI: 10.17632/cy36wggdyh.2
title: Data relevant to "Neon Isotopes in Individual Vesicles of Icelandic Basaltic Glasses: Insights into the Origin of Light Volatile Elements on Earth"

description: This file contains the data relevant to our article, "Neon Isotopes in Individual Vesicles of Icelandic Basaltic Glasses: Insights into the Origin of Light Volatile Elements on Earth." It includes the noble gas elemental and isotopic compositions obtained from both step crushing and laser ablation analyses performed on RS-ISL-2024-6, a basalt sample from Midfell, Iceland. All errors are reported at 1σ.
DOI: 10.5281/zenodo.17607963
title: Results from the grant "Adoptive nanotherapy against ATF4 in triple negative breast cancer patients-derived models"
title: Resultados del proyecto "Nanoterapia adoptiva dirigida frente a ATF4 en modelos derivados de pacientes con cáncer de mama triple negativo"

description: This dataset gathers the results from the grant PI19/01533 funded by Instituto de Salud Carlos III (Spain).

The dataset includes the following files:



RNAseq_BT549_MDA231_HT_BLP_Calahorra et al 2024.xlsx: RNA sequencing dataset from BT549 and MDA-MB-231 cell lines treated with vehicle, hydroxytyrosol (HT), beta lapachone (BLP) or their combination. Upregulated or downregulated gene expression with a fold change of 0.5. The results of this dataset are published in Calahorra et al 2024 (https://doi.org/10.1016/j.biopha.2024.116439).

RNAseq_siRNA-NDRG1_vs_siRNA-Scrambled_+-TGFB1_Lopez-Tejada et al 2025.xls: it contains RNA seq expression data of MDA-MB-231 breast cancer cells treated with siRNA against NDRG1 (siNDRG1) or siRNA control (scrambled or SCR), with or without stimulation with TGFbeta1. This data belongs to the publication Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645).

Clue_Compounds_FoldChange1.6_Lopez-Tejada et al 2025.xlsx: it contains the connectivity score data (compounds) from the repositioning study made with Clue from the RNAseq dataset (RNAseq_siRNA-NDRG1_vs_siRNA-Scrambled_+-TGFB1_Lopez-Tejada et al 2025.xls) upon treatment with TGFbeta1, publised in Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645).

Clue_Perturbational class_FoldChange1.6_Lopez-Tejada et al 2025.xlsx: it contains the connectivity score data (perturbational class) from the repositioning study made with Clue from the RNAseq dataset (RNAseq dataset_siRNA-NDRG1_vs_siRNA-Scrambled_with without TGFB1.xls) upon treatment with TGFbeta1, publised in Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645).

Experimental Data_Blaya-Canovas et al 2024.xlsx: this file contains all raw data of the experiments published in Blaya-Canovas et al., 2024 (https://doi.org/10.1186/s12943-024-01997-x). This spreadsheet is organized according to each experiment shown in the paper.

Experimental Data_Calahorra et al 2024.xlsx: this file contains all raw data of the experiments published in Calahorra et al., 2024 (https://doi.org/10.1016/j.biopha.2024.116439). This spreadsheet is organized according to the figures of the paper, being each figure a sheet that includes all the experiments made.

Experimental Data_Lopez-Tejada et al 2023.xlsx: this file contains all raw data of the experiments published in Lopez-Tejada et al., 2023 (DOI: 10.7150/ijbs.78738). This spreadsheet is organized according to each experiment shown in the paper.

Experimental Data_Lopez-Tejada et al 2025.xlsx: raw data from the publication Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645). This spreadsheet is organized according to the figures of the paper, being each figure a sheet that includes the experiments made.


All results were processed using GraphPad Prism 9. Data processing: outliers were excluded from the statistical analysis.
DOI: 10.5281/zenodo.17607964
title: Results from the grant "Adoptive nanotherapy against ATF4 in triple negative breast cancer patients-derived models"
title: Resultados del proyecto "Nanoterapia adoptiva dirigida frente a ATF4 en modelos derivados de pacientes con cáncer de mama triple negativo"

description: This dataset gathers the results from the grant PI19/01533 funded by Instituto de Salud Carlos III (Spain).

The dataset includes the following files:



RNAseq_BT549_MDA231_HT_BLP_Calahorra et al 2024.xlsx: RNA sequencing dataset from BT549 and MDA-MB-231 cell lines treated with vehicle, hydroxytyrosol (HT), beta lapachone (BLP) or their combination. Upregulated or downregulated gene expression with a fold change of 0.5. The results of this dataset are published in Calahorra et al 2024 (https://doi.org/10.1016/j.biopha.2024.116439).

RNAseq_siRNA-NDRG1_vs_siRNA-Scrambled_+-TGFB1_Lopez-Tejada et al 2025.xls: it contains RNA seq expression data of MDA-MB-231 breast cancer cells treated with siRNA against NDRG1 (siNDRG1) or siRNA control (scrambled or SCR), with or without stimulation with TGFbeta1. This data belongs to the publication Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645).

Clue_Compounds_FoldChange1.6_Lopez-Tejada et al 2025.xlsx: it contains the connectivity score data (compounds) from the repositioning study made with Clue from the RNAseq dataset (RNAseq_siRNA-NDRG1_vs_siRNA-Scrambled_+-TGFB1_Lopez-Tejada et al 2025.xls) upon treatment with TGFbeta1, publised in Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645).

Clue_Perturbational class_FoldChange1.6_Lopez-Tejada et al 2025.xlsx: it contains the connectivity score data (perturbational class) from the repositioning study made with Clue from the RNAseq dataset (RNAseq dataset_siRNA-NDRG1_vs_siRNA-Scrambled_with without TGFB1.xls) upon treatment with TGFbeta1, publised in Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645).

Experimental Data_Blaya-Canovas et al 2024.xlsx: this file contains all raw data of the experiments published in Blaya-Canovas et al., 2024 (https://doi.org/10.1186/s12943-024-01997-x). This spreadsheet is organized according to each experiment shown in the paper.

Experimental Data_Calahorra et al 2024.xlsx: this file contains all raw data of the experiments published in Calahorra et al., 2024 (https://doi.org/10.1016/j.biopha.2024.116439). This spreadsheet is organized according to the figures of the paper, being each figure a sheet that includes all the experiments made.

Experimental Data_Lopez-Tejada et al 2023.xlsx: this file contains all raw data of the experiments published in Lopez-Tejada et al., 2023 (DOI: 10.7150/ijbs.78738). This spreadsheet is organized according to each experiment shown in the paper.

Experimental Data_Lopez-Tejada et al 2025.xlsx: raw data from the publication Lopez-Tejada et al 2025 (DOI: 10.7150/ijbs.112645). This spreadsheet is organized according to the figures of the paper, being each figure a sheet that includes the experiments made.


All results were processed using GraphPad Prism 9. Data processing: outliers were excluded from the statistical analysis.
DOI: 10.15468/dl.8vwfsx
title: Occurrence Download

description: A dataset containing 266546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium arvense",
 "HasCoordinate is true"
 ]
}

 The dataset includes 266546 records from 1852 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044878-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/98rdn-gxj67
title: M. xanthus pilA - pilY1.3-flag

description: Raw data files of M. xanthus pilA - pilY1.3-flag
description: <strong>Tilt Series Date:</strong> 2020-01-31</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Yi-Wei Chang, Anke Treuner-Lange, Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Inoculated 15 mL 1% CTT with 1mL previously frozen glycerol stock. . Incubated at 32C/225rpm for 2 days.</p>
<strong>Sample Preparation:</strong> Harvested, mixed 40uL cells with 10nm Au fiducials, plunge froze 4uL . (bf 6, bt 6s, d 1s)</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-01-31-21/rawdata/</p>pilY13_2_031_af.mrc,  Tilt Series (Pixel Size 0.336 nm), 5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-01-31-21/rawdata/pilY13_2_031_af.mrc"
        > <i class="download icon"></i> Download </a></p>

        pilY13_2_031_af_full.rec,  Reconstruction (Pixel Size 1.344 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2020-01-31-21/3dimage_110775/pilY13_2_031_af_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.71929/rubin/2585429
title: DMTN-219: Proposal and Prototype for Prompt Processing

description: The Prompt Processing framework has long been a gray area in the overall Rubin Observatory architecture. This document attempts to fill that hole by proposing a concrete design with an accompanying prototype implementation that should meet minimum requirements. Additional features and optimizations that could be incorporated later are also described.
DOI: 10.22002/g1nj2-wk867
title: JV9298

description: DotF-sfGFP DotB E191K
description: <strong>Tilt Series Date:</strong> 2019-10-14</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -5.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> PNCC Krios 3</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Strain from Joe Vogel</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Late exponential/Early stationary</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 copper. Vitrobot 22 deg C, 100% humidity, 4uL of 2X concentrated culture, blot force 6, blot time 3 sec, drain time 1 sec, wait time 0 sec.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-154/rawdata/</p>JV9298_41_B3.mrc,  Tilt Series (Pixel Size 0.1323 nm), 4.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-154/rawdata/JV9298_41_B3.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9298_41_B3.rec,  Reconstruction (Pixel Size 1.0584 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2019-10-14-154/3dimage_109764/JV9298_41_B3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/f1xft-9me31
title: Ecoli_EPEC_8609

description: EPEC cells strain 8609 (has the conjugation pilus, the bundle-forming pilus but lack the core  .  complex). The aim is to see whether these cells make similar membrane tubes as to those .  observed in EPEC 8612
description: <strong>Tilt Series Date:</strong> 2020-02-25</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 8609, EPEC ΔLEE ΔflhBA ΔfliOPQR ΔminCD</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 115.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Samples prepared with Ritesh and Amit (from Ilan Rosenshine and Sigal ben Yehuda labs at the . Hebrew university).</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Samples were prepared as EPEC 8612 (see these tomograms).</p>
<strong>Sample Preparation:</strong> Similar to what is described for EPEC 8612 tomograms.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-25-16/rawdata/</p>EPEC_8609_010_af.mrc,  Tilt Series (Pixel Size 0.449 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-25-16/rawdata/EPEC_8609_010_af.mrc"
        > <i class="download icon"></i> Download </a></p>

        EPEC_8609_010_af_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-25-16/3dimage_111695/EPEC_8609_010_af_full.rec"
        > <i class="download icon"></i> Download </a></p>