cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5c793/3
title: lynx_allData

description: This table contains the GPS locations of lynx associated with habitat variables and temporal variables that were used to build a logistic regression modelling the proportion of time lynx spend active. The data in this table refers to the all data model in Gehr et al. 2017 (Ecology and Evolution). The data was restricted to locations between the beginning of astronomical twilight in the morning (sun angle &lt; 18 degrees below the horizon) and the end of astronomical twilight in the evening (sun angle &gt; 18 degrees below the horizon). Hence, to repeat the model in Gehr et al. 2017 (Ecology and Evolution) the data with sun angle &lt;= -18 degrees have to be removed. For the model used to create Figure S4 in the Appendix S1 the complementary dataset has to be used. The table is divided into locations assigned to an active or inactive behavioral state (column “active” is a dummy variable - 1=active/0=inactive). Swisstopo in the column headers refers to the source of the environmental variables. Cover swisstopo is a dummy variable for open/cover. Edge_dist_swisstopo refers to the distance to the closest forest edge. Slope_sq and altitude_sq are the squared slope and altitude variables. Aspect_swisstopoS is the southern exposition. Cover_edge refers to an interaction term between cover_swisstopo and edge_dist_swisstopo. House_road_dist_small refers to an interaction between house_density and road_dist_small. The 6 temporal variables are time harmonics of a Fourier transform for time of day (tsin, tcos; period of 24) and day of year (ytsin, ytcos, ytsin2, ytcos2; period of 365). All habitat variables were measured at the end of a step. All continuous variables in this table are mean centered and standardized to a SD=1. For information on the raw data or for R-code used to run the models please contact the data owner.
DOI: 10.5061/dryad.5c793/4
title: lynx_nohunting

description: This table contains the GPS locations of lynx associated with habitat variables and temporal variables that were used to build a logistic regression modelling the proportion of time lynx spend active. The data in this table refers to the no hunting model in Gehr et al. 2017 (Ecology and Evolution). This table differs from the all data table in that all locations during the 10 week hunting season were removed. The data was restricted to locations between the beginning of astronomical twilight in the morning (sun angle &lt; 18 degrees below the horizon) and the end of astronomical twilight in the evening (sun angle &gt; 18 degrees below the horizon). Hence, to repeat the model in Gehr et al. 2017 (Ecology and Evolution) the data with sun angle &lt;= -18 degrees have to be removed. For the model used to create Figure S4 in the Appendix S1 the complementary dataset has to be used. The table is divided into locations assigned to an active or inactive behavioral state (column “active” is a dummy variable - 1=active/0=inactive). Swisstopo in the column headers refers to the source of the environmental variables. Cover swisstopo is a dummy variable for open/cover. Edge_dist_swisstopo refers to the distance to the closest forest edge. Slope_sq and altitude_sq are the squared slope and altitude variables. Aspect_swisstopoS is the southern exposition. Cover_edge refers to an interaction term between cover_swisstopo and edge_dist_swisstopo. House_road_dist_small refers to an interaction between house_density and road_dist_small. The 6 temporal variables are time harmonics of a Fourier transform for time of day (tsin, tcos; period of 24) and day of year (ytsin, ytcos, ytsin2, ytcos2; period of 365). All habitat variables were measured at the end of a step. All continuous variables in this table are mean centered and standardized to a SD=1. For information on the raw data or for R-code used to run the models please contact the data owner.
DOI: 10.5061/dryad.5c793/5
title: mortality_systematicSearch

description: This table contains the deer mortality data used to build the general additive models (GAM) for the systematic search data in Gehr et al. 2017 (Ecology and Evolution) showing hunting induced predator facilitation in lynx. Column “count” refers to the number of kills found per Julian day (column “Julian”) during systematic cluster searches between 2011-2015. The column “rm” refers to the moving average (rolling mean) of counts over a window size of 31 days (i.e. one month). The column “n_lynx” refers to the number of lynx monitored for the systematic cluster searches per month. The column “rm_weighted” refers to the ratio between rm and n_lynx and was used to correct for temporal variation in lynx prey remain monitoring, and hence for the variation in detection probability. For the all data model all data was used whereas for the no hunting model the data for the hunting season was excluded (Julian days 244-319).
DOI: 10.5061/dryad.5c793/6
title: mortality_publicReporting_lynx

description: This table contains the deer mortality data used to build the general additive models (GAM) for the public reporting data in Gehr et al. 2017 (Ecology and Evolution) showing hunting induced predator facilitation in lynx. Column “count” refers to the number of kills reported per Julian day (column “Julian”) for the years 1990-2010. The column “rm” refers to the moving average (rolling mean) of counts over a window size of 31 days (i.e. one month). The column “ratio_raw” refers to the ratio between the moving average of reported lynx kills (“rm” in this table) and the moving average of reported natural mortalities (“rm” in the table “mortality_publicReporting_natural.txt”) used to account for reporting bias in the public reporting dataset. For the all data model all data was used whereas for the no hunting model the data for the hunting season was excluded (Julian days 244-319).
DOI: 10.5061/dryad.5dd92/13
title: scripts

description: scripts for processing the image files
DOI: 10.5061/dryad.6bs40/1
title: Nest odor changes connected with season and parasite presence in P. biglumis nests

description: Data collected in the field, analyzed with SPSS statistic. Px = Peak number x; FACx = Principal Component x; Perc x = Percentage of the peak x; QTot = Total concentration of hydrocarbons; IdNest = Sample ID; dx = right side; sx = left side; mtg = Montgenèvre, fer = Ferrere;
DOI: 10.5061/dryad.6k1s9d4/14
title: RAxML best tree: 7 Sanger loci, partitioned, reduced missing data

description: The best tree with with boostrap frequencies, using the reduced Sanger dataset without gaps but with seven partitions. Sites with higher missing data were removed as described in the text. Population codes follow the text; note this is an unrooted tree.
DOI: 10.5061/dryad.6k1s9d4/15
title: RAxML best tree: 7 Sanger loci, partitioned, gap coding

description: The best tree with with boostrap frequencies, using the full Sanger dataset with gaps and with eight partitions. Population codes follow the text; note this is an unrooted tree.
DOI: 10.5061/dryad.6k1s9d4/16
title: RAxML best tree: 7 Sanger loci, partitioned, gap coding

description: The best tree with with boostrap frequencies, using the reduced Sanger dataset with gaps and with eight partitions. Sites with higher missing data were removed as described in the text. Population codes follow the text; note this is an unrooted tree.
DOI: 10.5061/dryad.94082/1
title: Source Data_Main Figures

description: Source data for main figures
DOI: 10.5061/dryad.94082/2
title: Source Data_Supplementary Figures

description: Source data for figure supplements
DOI: 10.5061/dryad.95g1v/1
title: soil chemistry

description: Forest floor and upper mineral soil (0-20 cm) chemistry analysis for each old-growth plot
DOI: 10.5061/dryad.95g1v/2
title: distance matrix

description: Interplot distances between old-growth plots used in Mantel test
DOI: 10.5061/dryad.95g1v/3
title: EM fungal dataset

description: Full taxa list for each old-growth plot, along with Species Hypothesis designation and representative molecular sequence
DOI: 10.5061/dryad.9d84j/2
title: Morphological parameters of juvenile daphnia magna

description: This Excel sheet contains the morphological parameters of the juvenile Daphnids (Daphnia magna) examined during the experiment. These were the offspring of the adult Daphnids as described in the publication. From the 1st, 3rd and 5th clutch we measured the morphological parameters of  animals from each replicate.
DOI: 10.5061/dryad.9d84j/3
title: Number of Offspring

description: This Excel Sheet contains the absolute number of neonates produced by the adult daphnids (Daphnia magna) from the 1st to the 5th clutch.
DOI: 10.5061/dryad.9d84j/4
title: Complete qPCR run data (BL22, K34J, Max4)

description: This Zip Archive contains all qPCR runs analyzed in the above mentioned publication for the three Daphnia magna clones BL22, K34J and Max4. Explanations are available in the notes.docx.
DOI: 10.5061/dryad.f9011/1
title: Zip file of complete data set

description: The data files include: 1) Data on three behavioural experiments on baffling behaviour: two lab and one field experiment. 2) Data on size distribution of baffle leaves. 3) Model reports on the finite element models used in the study 4) Vibrometry data and simultaneous sound recording data. Data files are named intuitively, as are internal headers and descriptors are provided where necessary.
DOI: 10.5061/dryad.h9g697r/4
title: Leung et al. fungi data for main experiment

description: The sequence counts (from OBITools) within each sample are presented. The samples chosen for sequencing only included those that had a positive band with the primers ITS5 and ITS5.8 by PCR. Each sample is noted by their ID followed by the time point at which the sample was taken (i.e., ID_Week 0, ID_Week 3, or ID_Week 4). The highest classified rank from the sequence is under the column, Classified_Rank. Data on the Order, Family, Genus, Species, and overall scientific name of the sequences are presented, in addition to the taxid of the sequence and the sequence itself.
DOI: 10.5061/dryad.j7401/1
title: Code_supplement

description: Zip file containing R code used to prepare and analyze data as well as all input datasets, including the GMPD
DOI: 10.5061/dryad.kh657/1
title: Data for logistic regression of complete bole decomposition over 15 years

description: The data are described in an internal readme file.
DOI: 10.5061/dryad.kh657/2
title: Comparison of removed and retained boles

description: Boles were removed from the logistic regression analysis and the removed/retained boles are compared here
DOI: 10.5061/dryad.mq0gb/1
title: Koala genotypes (1272 SNP loci)

description: This file contains genotype data for the five koalas used in this study. The data is in single-row format for 1272 SNP loci identified through DArT-Seq TM protocols. The 209 loci used for individual identification testing in our paper are identified here, and genotypes are shown for scat and blood DNA samples from each koala.
DOI: 10.5061/dryad.q0d1n/2
title: Data_IRsurgery_1
DOI: 10.5061/dryad.q0d1n/3
title: Data_IRsurgery_2
DOI: 10.5061/dryad.q0d1n/4
title: Data_IRsurgery_3
DOI: 10.5061/dryad.q6f6qd7/1
title: Nuclear_alignments_518genes

description: Concatenated alignment (.phy format) of 518 orthologous nuclear genes.
DOI: 10.5061/dryad.q6f6qd7/2
title: Plastid_alignment

description: Alignment of plastid sequences
DOI: 10.5061/dryad.r51c7/1
title: 28S_COI_COII_H3_alignment

description: Concatenated four gene alignment (28S, COI, COII, H3) for 136 specimens used in phylogenetic analyses of Heliozelidae family.
DOI: 10.5061/dryad.vb44k/1
title: Supplementary Information for the evolution of the plastid genomes in diatoms

description: This file contains supplementary information for the book chapter. Table A to G contains additional information of the genome size, genome rearrangement, and correlation between genome rearrangement etc.
DOI: 10.5061/dryad.22tv3
title: Data from: Penetrative trace fossils from the late Ediacaran of Mongolia: early onset of the agronomic revolution
DOI: 10.5061/dryad.22tv3/1
title: SuppData1

description: S1. Correlation of Arenicolites horizons and ratio of dolomite/calcite of the carbonate beds analyzed by XRD analysis. Note that most of the Arenicolites horizons are located in the limestone, not in heavily dolomitized parts.
DOI: 10.5061/dryad.22tv3/2
title: SuppData2

description: S2. Synsedimentary folding in the unit 15 near Arenicolites horizons, showing a ductile deformation of beds. This deformation also shows that the limestone beds were soft after deposition, allowing penetration of benthic organisms into the sediments.
DOI: 10.5061/dryad.22tv3/3
title: SuppData3

description: S3. Bottom of a bed at 171.24 meters with Arenicolites.
DOI: 10.5061/dryad.2fk71/30
title: Data.zip, Part 29 of 31
DOI: 10.5061/dryad.2fk71/31
title: Data.zip, Part 30 of 31
DOI: 10.5061/dryad.2fk71/32
title: Data.zip, Part 31 of 31
DOI: 10.5061/dryad.34m83/1
title: Galactia Datasets

description: This file contains four data sheets, with raw data on plant size under the two treatments (saline/non-saline), spore identifications, plant elemental contents, and an overall datafile.
DOI: 10.5061/dryad.58g2t4k/1
title: tank bromeliad experiment (Pires et al)

description: This file contains the data used to produce the manuscript "Interactive effects of climate change and biodiversity loss on ecosystem functioning" by Pires et al in Ecology. The first sheet contains data of decomposition (dry weight loss in mg after 180 days), bacterial production (µmol C L-1 h-1), detritivore abundance (number of detritivore individuals in each tank bromeliad), detritivore richness (number of detritivore species in each tank bromeliad), bromeliad maximum volume (ml) and the mechanisms by which litter diversity affected decomposition (TICE: trait-independent complementarity effect; DE: dominance effect and TDCE: trait-dependent complementarity effect). The second sheet contains data of methane concentration (ppm) in three different sampling times (30, 60 and 90 days after rainfall manipulation). The first three columns in each sheet describe the treatments used in the experiment. For more details about the experimental design, sampling and methods used to produce these data, see the manuscript in the journal.
DOI: 10.5061/dryad.5c793/7
title: mortality_publicReporting_natural

description: This table contains the natural mortality data for deer used to correct for reporting bias in the number of reported lynx kills in the public reporting data in Gehr et al. 2017 (Ecology and Evolution; see “mortality_publicReporting_lynx.txt”). Column “count” refers to the number of kills reported per Julian day (column “Julian”) for the years 1990-2010. The column “rm” refers to the moving average (rolling mean) of counts of reported natural mortalities over a window size of 31 days (i.e. one month). The column “rm” was used to calculate the ratio between the moving average of reported lynx kills (“rm” in the table “mortality_publicReporting_lynx.txt”) and the moving average of reported natural mortalities (“ratio_raw” in the table “mortality_publicReporting_lynx.txt”) used to account for reporting bias in the public reporting dataset.
DOI: 10.5061/dryad.76854/2
title: Frere DataSet

description: Available in this data set are the vital signs, chief complaints and HIV status of all patients that presented to the Frere Hospital in East London during the study period and were enrolled in the study. Subject ID and date/time of presentation have been removed due to sensitivities surrounding HIV testing.
DOI: 10.5061/dryad.78h27/1
title: Plastid alignment

description: Alignment of the 79 plastid genes obtained from 91 accessions of Funariaceae and outgroups via targeted enrichment
DOI: 10.5061/dryad.78h27/2
title: Mitochondrial alignment

description: Alignment of the 38 genes obtained from 91 accessions of Funariaceae and outgroups obtained via targeted enrichment
DOI: 10.5061/dryad.78h27/3
title: Funariaceae_plastid

description: Compressed file with the single-gene sequence lists for the plastid genome
DOI: 10.5061/dryad.78h27/4
title: Funariaceae_mitochondrial

description: Compressed file with the single-gene sequence lists for the mitochondrial genome
DOI: 10.5061/dryad.78h27/5
title: Voucher table

description: Information about the vouchers of the samples used for the study. Some old ID numbers and their equivalence to the final ID numbers are included. Samples present in the single-gene sequence list not used in the study were discarded after failing the barcode test with psbA-trnH (see Materials and Methods)
DOI: 10.5061/dryad.c0765/1
title: El Coronado Site Temperature Data

description: Contains the all individual measurements from all temperature sensors at the El Coronado Study site.
DOI: 10.5061/dryad.c0765/2
title: Southwestern Research Station Site Temperature Data

description: Contains the all individual measurements from all temperature sensors at the Southwestern Research Station study site.
DOI: 10.5061/dryad.c0765/3
title: Harshaw Creek Site Temperature Data

description: Contains the all individual measurements from all temperature sensors at the Harshaw Creek study site.
DOI: 10.5061/dryad.c0765/4
title: Sonoita Creek Site Temperature Data

description: Contains the all individual measurements from all temperature sensors at the Sonoita Creek study site.
DOI: 10.5061/dryad.c0765/5
title: Head Transect IR Data

description: Raw data from our analysis of hummingbird head transects from infrared images.
DOI: 10.5061/dryad.c0765/6
title: Hummingbird Ts verses Te Comparison Data

description: Individual measurements of whole-body surface temperature and corresponding environmental temperature used to analyzed patterns of whole-body surface temperature change across the range of environmental temperatures measured in this study.
DOI: 10.5061/dryad.c0765/7
title: Effect of Environmental Temperature on Body vs HDA

description: Individual measurements of whole-body surface temperature and corresponding environmental temperature used to analyzed environmental impact on whole-body surface temperature and heat dissipation area surface temperature.
DOI: 10.5061/dryad.c75sj/1
title: 1_CPR_DNA_sequences

description: DNA sequences (merged sequence text files in FASTA format) for each sample as well as various files (mostly .csv format) with information on the identity of samples, taxonomy assigned to OTUs, etc... needed for initial data processing. These files are called in the r code (1) below.
DOI: 10.5061/dryad.c75sj/2
title: 2_CPR_Final_Data

description: Summaries including DNA sequence counts for samples analysed in the paper and the taxa identified using morphology These files are called in the r code (2) below.
DOI: 10.5061/dryad.c75sj/3
title: R Code: 1_CPR_Read_in_Fasta_files

description: R code for initial processing of the DNA sequence data and assignment of taxonomic OTUs
DOI: 10.5061/dryad.gt3m1/1
title: Table 1. Data of the 87 bryophytes used in this study.
DOI: 10.5061/dryad.gt3m1/2
title: Table 2. Data of an additional set of species collected in diverse places and dates.
DOI: 10.5061/dryad.jn710/1
title: Asplenium_obovatum.nex

description: Nexus file of 46 accessions and three chloroplast markers
DOI: 10.5061/dryad.jn710/2
title: Fig_3_BI.tre

description: Bayesian inference tree associated with Figure 3
DOI: 10.5061/dryad.jn710/3
title: Fig_3_ML.tre

description: Maximum likelihood tree associated with Figure 3
DOI: 10.5061/dryad.kh657/3
title: Wood respiration rates before NPK treatment
DOI: 10.5061/dryad.kh657/4
title: Wood respiration after NPK treatment

description: Here are the wood respiration rates, change in wood respiration rates from average pretreatment respiration, and PCA axes values for boles that were treated with both water and NPK to test for nutrient limitation
DOI: 10.5061/dryad.kh657/5
title: nutrient concentrations

description: The concentrations of a variety of nutrients in the boles that were then assessed for differences in respiration in response to either NPK or water addition.  Average concentrations are given in a table in text of the relevant manuscript.
DOI: 10.5061/dryad.mk361/1
title: JEMBE 50994_Data

description: The entire file is the data associated to the manuscript. The first sheet (Fish and Kelp Abundance) is the census data from two different sampling seasons in 4 sites (transects 50 m long). The second sheet is size over algae in which was counted the size of fish along with different kelp habitat use (in holdfast, baldes or outside). The third sheet is the epiphyte presence/absence from the digested tissue by herbivorous fish. The fourth sheet is the sporophytes count from digested and undigested tissue. The fish and last sheet is the data presented in the supplementary information.
DOI: 10.5061/dryad.p1c3h/1
title: Dataset

description: This dataset comprises 3 sheets : 1) counts and causes of diaspore detachment per animal species 2) paired grooming monitoring data and 3) diaspore retention time and dispersal distance for the 756 monitored diaspores.
DOI: 10.5061/dryad.q0d1n/15
title: Data_IRsurgery_7_review

description: Contains replicates of VNC/DNC cut surgery at various location which were pooled with the data in Figure 7 at the review stage.
DOI: 10.5061/dryad.q0d1n/16
title: Data_IRsurgery_8_review

description: Contains replicates of most conditions in the B-motor-neuron ablation experiments in Figure 4, which are now pooled with the original data.
DOI: 10.5061/dryad.q0d1n/17
title: Data_MiniSOG_2_review

description: Contains optogenetic 2FU data from worms in which all DB and/or most VB motor neurons were ablated.
DOI: 10.5061/dryad.q0d1n/18
title: Data_MiniSOG_3_review

description: Contains data from VNC-isolated worms in which all DB and/or most VB motor neurons were ablated.
DOI: 10.5061/dryad.q0d1n/5
title: Data_IRsurgery_4
DOI: 10.5061/dryad.q0d1n/6
title: Data_IRsurgery_5
DOI: 10.5061/dryad.q0d1n/7
title: Data_IRsurgery_6
DOI: 10.5061/dryad.q0d1n/8
title: Data_MiniSOG
DOI: 10.5061/dryad.q6f6qd7/3
title: RAxML_bestTrees_genetrees

description: Single .fasta file containing all 518 nuclear gene trees inferred using RAxML.
DOI: 10.5061/dryad.qb4b7/1
title: Experimental data
DOI: 10.5061/dryad.rv71c/1
title: Schallmo_etal_2017_SuppressionFacilitation

description: This file contains the data for the manuscript entitled "Suppression and facilitation of human neural responses" Authors: Schallmo, M-P., Kale, A.M., Millin, R., Flevaris, A.V., Brkanac, Z., Edden, R.A.E., Bernier, R.A., 
Murray, S.O.
DOI: 10.17632/bfvvc4gj9z.1
title: Data for: Supplementation of astaxanthin alleviated oxidative damage induced by chronic high pH stress encountered by Chinese mitten crab Eriocheir sinensis cultured in ponds

description: reactive oxygen species (ROS) produced in hemolymph cells, activity of total superoxide dismutase (T-SOD), total antioxidant capacity (T-AOC), activities of alanine aminotransferase (ALT) and aspartate aminotransferase (AST) in the serum, apoptotic ratio of hemolymph cells, hepatopancreas histology, hepatosomatic indices (HSI) and carapace AX concentration
DOI: 10.17632/zk2txbjndn.1
title: Data for: An Epidemiological Survey of Porcine Cysticercosis in Nyasa District, Ruvuma Region, Tanzania

description: Porcine cysticercosis
DOI: 10.5061/dryad.31t0k/1
title: Eitzinger et al_Testing validity Funct Respon_Raw data

description: Matrix of centipede predator individuals (collected from four forest sites in Thuringia, Germany on eight dates during 2009 and 2010) which were tested for consumption of 14 soil prey groups by molecular gut content analysis. Matrix contains taxonomic details of centipede predators as well as their sex, body size (mm), body mass (mg) and development stage. Consumption of prey (=positive detection of prey DNA) is denoted as '1', non-consumption as '0'. If predators were not tested cells contain 'NA'.
DOI: 10.5061/dryad.35j39r8/1
title: Plumage pattern characteristics of Estrildid finches

description: Geometric features of plumage patterns and PCA outcomes are shown for each sex of each species.