cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3715018_d1
title: Additional file 1: of Dental anomalies: prevalence and associations between them in a large sample of non-orthodontic subjects, a cross-sectional study

description: Analyzed data. Anonymous data used for the study. (XLSX 317Â kb)
DOI: 10.6084/m9.figshare.c.3715027_d1.v1
title: Additional file 1: of Use of Nintendo Wii Balance Board for posturographic analysis of Multiple Sclerosis patients with minimal balance impairment

description: S1-15. Bland-Altman Plots for all the features extracted from both the FP and the WBB. Y axis of each plot presents the difference between FP and WBB, while X axis presents the average between the two measures. The plots show a consistent trend of overestimation of the features extracted from the WBB data characterized by a negative bias (bold lane). Most features also present a linear trend whereas the difference between WBB and FP measurements increases with the magnitude of the feature. (ZIP 1255 kb)
DOI: 10.6084/m9.figshare.c.3715027_d1
title: Additional file 1: of Use of Nintendo Wii Balance Board for posturographic analysis of Multiple Sclerosis patients with minimal balance impairment

description: S1-15. Bland-Altman Plots for all the features extracted from both the FP and the WBB. Y axis of each plot presents the difference between FP and WBB, while X axis presents the average between the two measures. The plots show a consistent trend of overestimation of the features extracted from the WBB data characterized by a negative bias (bold lane). Most features also present a linear trend whereas the difference between WBB and FP measurements increases with the magnitude of the feature. (ZIP 1255 kb)
DOI: 10.6084/m9.figshare.c.3715033_d1.v1
title: Additional file 1: of The prediction of a pathogenesis-related secretome of Puccinia helianthi through high-throughput transcriptome analysis

description: Dataset of 35286 ORFs of the Puccinia helianthi transcriptome (XLSX 4749 kb)
DOI: 10.6084/m9.figshare.c.3715006_d3.v1
title: Additional file 3: of Mathematical modelling and a systems science approach to describe the role of cytokines in the evolution of severe dengue

description: Validation Data. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3716107_d1.v1
title: Additional file 1: of Assessment of pre-injury health-related quality of life: a systematic review

description: Data_Assessment of pre-injury health-related quality of life: a systematic review. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3716128_d7.v1
title: Additional file 7: of Convergence of retrotransposons in oomycetes and plants

description: Multiple amino acid sequence alignment of RT domains from diverse non-LTR-RTs constructed and used for the phylogenetic reconstruction in the present study. (TXT 83 kb)
DOI: 10.6084/m9.figshare.c.3716155_d3
title: Additional file 3: of Outcomes of dysvascular partial foot amputation and how these compare to transtibial amputation: a systematic review for the development of shared decision-making resources

description: Risk of bias. (XLSX 132Â kb)
DOI: 10.6084/m9.figshare.c.3716128_d7
title: Additional file 7: of Convergence of retrotransposons in oomycetes and plants

description: Multiple amino acid sequence alignment of RT domains from diverse non-LTR-RTs constructed and used for the phylogenetic reconstruction in the present study. (TXT 83 kb)
DOI: 10.6084/m9.figshare.c.3716128_d8.v1
title: Additional file 8: of Convergence of retrotransposons in oomycetes and plants

description: Multiple amino acid sequence alignment of RNH genes and domains from diverse taxa constructed and used for the phylogenetic reconstruction in the present study. (TXT 45 kb)
DOI: 10.6084/m9.figshare.c.3716128_d8
title: Additional file 8: of Convergence of retrotransposons in oomycetes and plants

description: Multiple amino acid sequence alignment of RNH genes and domains from diverse taxa constructed and used for the phylogenetic reconstruction in the present study. (TXT 45 kb)
DOI: 10.6084/m9.figshare.c.3716170_d2.v1
title: Additional file 2: Table S2. of Profiling and validation of individual and patterns of Chlamydia trachomatis-specific antibody responses in trachomatous trichiasis

description: Raw OD values and anonymised clinical data from the microarray. (XLSX 290Â kb)
DOI: 10.6084/m9.figshare.c.3716170_d2
title: Additional file 2: Table S2. of Profiling and validation of individual and patterns of Chlamydia trachomatis-specific antibody responses in trachomatous trichiasis

description: Raw OD values and anonymised clinical data from the microarray. (XLSX 290Â kb)
DOI: 10.6084/m9.figshare.c.3716182_d6.v1
title: Additional file 6 of Bicodon bias can determine the role of synonymous SNPs in human diseases

description: Table S3. Statistical features of 3904 bicodons in the human genome. The first column corresponds to the amino acid pair (∗ symbolizes stop codon), the second column to the corresponding bicodon, the third and fourth columns list the number of occurrences of bicodons in the low and high PA samples, respectively. The fifth and sixth columns correspond to the residual scores χ L 2 $\chi _{L}^{2}$ and χ H 2 $\chi _{H}^{2}$ computed over the low and high PA samples, respectively. The last two columns correspond to the signed log[p-value] and the pause propensity values of each bicodon, respectively. (XLS 587 kb)
DOI: 10.6084/m9.figshare.c.3716182_d6
title: Additional file 6 of Bicodon bias can determine the role of synonymous SNPs in human diseases

description: Table S3. Statistical features of 3904 bicodons in the human genome. The first column corresponds to the amino acid pair (∗ symbolizes stop codon), the second column to the corresponding bicodon, the third and fourth columns list the number of occurrences of bicodons in the low and high PA samples, respectively. The fifth and sixth columns correspond to the residual scores χ L 2 $\chi _{L}^{2}$ and χ H 2 $\chi _{H}^{2}$ computed over the low and high PA samples, respectively. The last two columns correspond to the signed log[p-value] and the pause propensity values of each bicodon, respectively. (XLS 587 kb)
DOI: 10.6084/m9.figshare.c.3716212_d6.v1
title: Additional file 6: of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

description: Genomic regions under differential selection for various goat breeds selected for different breeding objectives. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3716212_d6
title: Additional file 6: of Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

description: Genomic regions under differential selection for various goat breeds selected for different breeding objectives. (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3717133_d1
title: Additional file 1: of Glatiramer acetate treatment persistence - but not adherence - in multiple sclerosis patients is predicted by health-related quality of life and self-efficacy: a prospective web-based patient-centred study (CAIR study)

description: Data on adherence, persistence, self-efficacy, HRQoL, gender and disease duration. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3717154_d1.v1
title: Additional file 1: of Group-housed females promote production of asexual ootheca in American cockroaches

description: Raw data shown in Table 2. Raw data about lengths of hatched oothecae, lengths of unhatched oothecae and mean numbers of nymphs per hatched oothecae are shown under the Table. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3717154_d1
title: Additional file 1: of Group-housed females promote production of asexual ootheca in American cockroaches

description: Raw data shown in Table 2. Raw data about lengths of hatched oothecae, lengths of unhatched oothecae and mean numbers of nymphs per hatched oothecae are shown under the Table. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3718198_d2
title: Additional file 11 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Table S6. The cell cycle and translational control modules. Two modules with 319 and 193 genes were automatically selected by breast cancer survival analysis. In each sheet, gene symbols, Entrez IDs, and weights in the corresponding modules are reported. Genes are sorted based on their weights. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3718198_d3.v1
title: Additional file 12 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Supplementary Code 1. Geo2R. The Geo2R script, used to compute p-values for probes, is available as part of the online supplementary materials. The process starts by downloading MILE data from GEO. (TXT 5.91 kb)
DOI: 10.6084/m9.figshare.c.3718198_d3
title: Additional file 12 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

description: Supplementary Code 1. Geo2R. The Geo2R script, used to compute p-values for probes, is available as part of the online supplementary materials. The process starts by downloading MILE data from GEO. (TXT 5.91 kb)
DOI: 10.6084/m9.figshare.25958929
title: Macronucleophagy maintains cell viability under nitrogen starvation by modulating micronucleophagy

description: Source Data for Main Figures and Extended Data Figures
DOI: 10.6084/m9.figshare.25958929.v1
title: Macronucleophagy maintains cell viability under nitrogen starvation by modulating micronucleophagy

description: Source Data for Main Figures and Extended Data Figures
DOI: 10.6084/m9.figshare.c.3718273_d2.v1
title: Additional file 2: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: Review of literature citing multiple bacterial interactomes. (XLS 359 kb)
DOI: 10.6084/m9.figshare.c.3718273_d2
title: Additional file 2: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: Review of literature citing multiple bacterial interactomes. (XLS 359 kb)
DOI: 10.6084/m9.figshare.c.3718279_d2.v1
title: MOESM5 of Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library

description: Additional file 2. Table S1. Details of chemical descriptors for retention time predictions. Table S2. Details of lipid identification in HEK cells. Table S3. Details of lipid identification in HeLa cells. Table S4. Details of lipid identification in mouse liver tissue. Table S5. Details of lipid identification in mouse ear tissue. Table S6. Binary vector matrix as lipid descriptors used in hierarchical clustering analysis.
DOI: 10.6084/m9.figshare.c.3718273_d3.v1
title: Additional file 3: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: All interactions in the meta-interactome network. Interactions are provided in PSI-MI TAB 2.7 format, with the addition of orthologous group identifiers for interactor A and B in the 43rd and 44th columnsÂ (AQ, AR), respectively. (XLS 47313 kb)
DOI: 10.6084/m9.figshare.c.3718273_d3
title: Additional file 3: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: All interactions in the meta-interactome network. Interactions are provided in PSI-MI TAB 2.7 format, with the addition of orthologous group identifiers for interactor A and B in the 43rd and 44th columnsÂ (AQ, AR), respectively. (XLS 47313 kb)
DOI: 10.6084/m9.figshare.c.3718279_d2
title: MOESM5 of Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library

description: Additional file 2. Table S1. Details of chemical descriptors for retention time predictions. Table S2. Details of lipid identification in HEK cells. Table S3. Details of lipid identification in HeLa cells. Table S4. Details of lipid identification in mouse liver tissue. Table S5. Details of lipid identification in mouse ear tissue. Table S6. Binary vector matrix as lipid descriptors used in hierarchical clustering analysis.
DOI: 10.6084/m9.figshare.c.3718291_d1
title: Additional file 1: of Network reconstruction of the mouse secretory pathway applied on CHO cell transcriptome data

description: Table S1. The full RECON. Table S2. The core components of the protein secretory machinery. Table S3. Cytoscape Input. Table S4. Summed Spearman correlation coefficients of the individual gene pairs of sub-cluster with the functional annotation ‘protein folding’ correlation to the complete mouse transcriptome. Table S5. Differential gene expression analysis of IgG production in CHO cells. Table S6. Differential gene expression analysis of cultivation phases in CHO cells. Table S7. Differential gene expression analysis of secretion stress caused by NaBu in CHO cells. Table S8. Differential gene expression analysis of 0% NEAA sup. in the medium for CHO cells. Table S9. GO enrichment analysis of CHO transcriptome data. Table S10. Correlation coefficients for Gene expression level correlated with protein and growth within the secretory network using RECON. (XLSX 11710 kb)
DOI: 10.6084/m9.figshare.c.3718291_d1.v1
title: Additional file 1: of Network reconstruction of the mouse secretory pathway applied on CHO cell transcriptome data

description: Table S1. The full RECON. Table S2. The core components of the protein secretory machinery. Table S3. Cytoscape Input. Table S4. Summed Spearman correlation coefficients of the individual gene pairs of sub-cluster with the functional annotation ‘protein folding’ correlation to the complete mouse transcriptome. Table S5. Differential gene expression analysis of IgG production in CHO cells. Table S6. Differential gene expression analysis of cultivation phases in CHO cells. Table S7. Differential gene expression analysis of secretion stress caused by NaBu in CHO cells. Table S8. Differential gene expression analysis of 0% NEAA sup. in the medium for CHO cells. Table S9. GO enrichment analysis of CHO transcriptome data. Table S10. Correlation coefficients for Gene expression level correlated with protein and growth within the secretory network using RECON. (XLSX 11710 kb)
DOI: 10.6084/m9.figshare.c.3718273_d4.v1
title: Additional file 4: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: All interactions in the consensus meta-interactome network. (XLS 6135 kb)
DOI: 10.6084/m9.figshare.c.3718273_d4
title: Additional file 4: of Bacterial protein meta-interactomes predict cross-species interactions and protein function

description: All interactions in the consensus meta-interactome network. (XLS 6135 kb)
DOI: 10.6084/m9.figshare.c.3718327_d2
title: Additional file 11 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: Results of testing our model on RNA sequences with different negative datasets. The performance of our model with different negative datasets whose instances were selected in the upstream region of each RBP binding region. (XLSX 464 kb)
DOI: 10.6084/m9.figshare.c.3718327_d4.v1
title: Additional file 1 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: Type of RBP binding regions. Type of RBP binding regions in human mRNAs. (ZIP 429 kb)
DOI: 10.15468/dl.5wvpxk
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Crossoptilon mantchuricum Swinhoe, 1863",
 "Year 1980-2024"
 ]
}

 The dataset includes 292 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038649-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3718327_d3
title: Additional file 12 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: Results of testing DeepBind and catRAPID on RNA sequences of 25 and 51 nucleotides. RBP-binding sequences used for comparison of DeepBind and catRAPID prediction methods and raw data obtained from execution of the three methods. (ZIP 223 kb)
DOI: 10.6084/m9.figshare.c.3718327_d4
title: Additional file 1 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: Type of RBP binding regions. Type of RBP binding regions in human mRNAs. (ZIP 429 kb)
DOI: 10.6084/m9.figshare.c.3718327_d6.v1
title: Additional file 3 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: 5,145 RBP-binding regions. 5,145 RBP-binding regions in human mRNA sequences obtained from CLIPdb. For each binding region, RBP name, chromosome name, the starting position of the binding region in the chromosome, the ending position of the binding region in the chromosome, binding affinity score, and strand information are specified. (XLSX 249 kb)
DOI: 10.6084/m9.figshare.c.3718327_d6
title: Additional file 3 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: 5,145 RBP-binding regions. 5,145 RBP-binding regions in human mRNA sequences obtained from CLIPdb. For each binding region, RBP name, chromosome name, the starting position of the binding region in the chromosome, the ending position of the binding region in the chromosome, binding affinity score, and strand information are specified. (XLSX 249 kb)
DOI: 10.6084/m9.figshare.c.3718327_d7.v1
title: Additional file 4 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: 6 training datasets with different ratios of positive to negative instances. 6 training datasets with different ratios of positive to negative instances (called 1:1, 1:2, 1:4, 1:6, 1:8 and 1:10 training datasets). (XLSX 3553 kb)
DOI: 10.6084/m9.figshare.c.3718327_d7
title: Additional file 4 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: 6 training datasets with different ratios of positive to negative instances. 6 training datasets with different ratios of positive to negative instances (called 1:1, 1:2, 1:4, 1:6, 1:8 and 1:10 training datasets). (XLSX 3553 kb)
DOI: 10.6084/m9.figshare.c.3718327_d8.v1
title: Additional file 5 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

description: 6 test datasets with different ratios of positive to negative instances. 6 test datasets with different ratios of positive to negative instances (called 1:1, 1:2, 1:4, 1:6, 1:8 and 1:10 test datasets). (XLSX 1208 kb)
DOI: 10.6084/m9.figshare.c.3719641_d1.v1
title: Additional file 1: Figure S4 of Thermal quantitative sensory testing in healthy Dutch children and adolescents standardized test paradigm and Dutch reference values

description: a - Cold detection threshold. Histograms per subgroup. b - Warm detection threshold. Histograms per subgroup. c - Cold pain threshold. Histograms per subgroup. d - Heat pain threshold. Histograms per subgroup. (ZIP 329 kb)
DOI: 10.6084/m9.figshare.c.3719632_d3
title: Additional file 3: of Analysis of psychometric properties of the modified SETQ tool in undergraduate medical education

description: Master sheet data. (XLS 596 kb)
DOI: 10.6084/m9.figshare.c.3719641_d1
title: Additional file 1: Figure S4 of Thermal quantitative sensory testing in healthy Dutch children and adolescents standardized test paradigm and Dutch reference values

description: a - Cold detection threshold. Histograms per subgroup. b - Warm detection threshold. Histograms per subgroup. c - Cold pain threshold. Histograms per subgroup. d - Heat pain threshold. Histograms per subgroup. (ZIP 329 kb)
DOI: 10.6084/m9.figshare.26950090
title: Imaging NRF2 activation in non-small cell lung cancer with positron emission tomography

description: Source data from the manuscript
DOI: 10.6084/m9.figshare.26950090.v1
title: Imaging NRF2 activation in non-small cell lung cancer with positron emission tomography

description: Source data from the manuscript
DOI: 10.15468/dl.6xq5j9
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassostrea ariakensis (Fujita, 1913)"
 ]
}

 The dataset includes 140 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038650-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3719728_d4.v1
title: Additional file 4: of A dosimetric model for the heterogeneous delivery of radioactive nanoparticles In vivo: a feasibility study

description: Table S2 (Dose Kernels for 177Lu, 90Y, and 33P) and S3 (Interpolated Dose Kernels for 177Lu, 90Y, and 33P). (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3719728_d4
title: Additional file 4: of A dosimetric model for the heterogeneous delivery of radioactive nanoparticles In vivo: a feasibility study

description: Table S2 (Dose Kernels for 177Lu, 90Y, and 33P) and S3 (Interpolated Dose Kernels for 177Lu, 90Y, and 33P). (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3719737_d2.v1
title: MOESM2 of Experimental recreation of the evolution of lignin-degrading enzymes from the Jurassic to date

description: Additional file 2. This file provides 113 sequences of Polyporales peroxidases from ten sequenced genomes in fasta format, aligned in a multiple fas (txt) file.
DOI: 10.6084/m9.figshare.c.3719737_d2
title: MOESM2 of Experimental recreation of the evolution of lignin-degrading enzymes from the Jurassic to date

description: Additional file 2. This file provides 113 sequences of Polyporales peroxidases from ten sequenced genomes in fasta format, aligned in a multiple fas (txt) file.
DOI: 10.6084/m9.figshare.c.3719806_d4.v1
title: Additional file 4: Table S5. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

description: Results from a genome-wide association analysis of CNVs overlapping gene loci. (XLSX 205 kb)
DOI: 10.6084/m9.figshare.c.3719803_d8
title: Additional file 8: of A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank

description: Output of C++ example from Fig.Â 9. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3719806_d4
title: Additional file 4: Table S5. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

description: Results from a genome-wide association analysis of CNVs overlapping gene loci. (XLSX 205 kb)