cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1572182.v1
title: Computerized methods for collecting confidence ratings: Task influences on patterns of responding

description: Retrospective confidence ratings and other judgments frequently are collected in computer-based psychology studies, but little research has investigated whether the method with which these ratings are collected influences the resulting data. To explore whether different confidence rating entry methods elicit different responses, 96 subjects were tested in a recognition memory paradigm. To rate confidence in recognition decisions from 0 - 100, half of the subjects used the numeric keypad on the keyboard to respond whereas the other half used an on-screen slider. Notably, whereas subjects using the numeric keypad frequently chose to enter confidence ratings divisible by 5 and 10, subjects using the slider showed no such preference but instead were more likely to accept the slider default value (i.e., 50) for each trial. The method with which confidence ratings are collected may have unintended consequences on confidence rating data and their interpretation.
DOI: 10.6084/m9.figshare.1310561.v4
title: 22 July 2014 Field Notes

description: Field notes including images and/or video records. Original versions of all videos are available as of 21 Jan 2016 following the increase in allowed file size by figshare.
DOI: 10.6084/m9.figshare.1310561.v3
title: 22 July 2014 Field Notes

description: Field notes including images and/or video records.
DOI: 10.6084/m9.figshare.2066490.v2
title: Salamander substrate study

description: bacterial community data from salamanders with analysis code
DOI: 10.6084/m9.figshare.2066490.v1
title: clinical abundance.csv

description: bacterial community data
DOI: 10.6084/m9.figshare.1601983.v1
title: Getting Funded Supplements

description: Supplements for Book, Getting Funded by Chandra S. Mishra, Palgrave Macmillan, 2015
DOI: 10.6084/m9.figshare.2067684.v3
title: Images

description: Pairs of every-day objects with norms of semantic relatedness.<br><br>Kovalenko, L.Y., Chaumon, M. & Busch, N.A., 2012. A Pool of Pairs of Related Objects (POPORO) for Investigating Visual Semantic Integration: Behavioral and Electrophysiological Validation. Brain topography.<br><br>This fileset contains the POPORO images along with the summary of relatedness ratings and image feature.
DOI: 10.6084/m9.figshare.2067684.v2
title: Images & Summary of relatedness ratings & features

description: POPORO images: Match, MisMatch and Object stimuli.<br>Summary of relatedness ratings and image features.<br>
DOI: 10.6084/m9.figshare.1601983.v3
title: Getting Funded Supplements

description: Supplements for Book, Getting Funded by Chandra S. Mishra, Palgrave Macmillan, 2015
DOI: 10.6084/m9.figshare.1601983.v2
title: Getting Funded Supplements

description: Supplements for Book, Getting Funded by Chandra S. Mishra, Palgrave Macmillan, 2015
DOI: 10.6084/m9.figshare.2220523.v3
title: ORCID Community day 2016 Presentation UNSW ORCID Integration

description: These are the slides for my lightning talk at the ORCID Outreach Meeting in Canberra Australia in February 2016. <br>It gives an overview of the ORCID integration at UNSW including the integration with Symplectic Elements, the ORCID Advisory Group and the ORCID integration strategy UNSW has developed.
DOI: 10.6084/m9.figshare.2220523.v5
title: ORCID Community day 2016 Presentation UNSW ORCID Integration

description: These are the slides for my lightning talk at the ORCID Outreach Meeting in Canberra Australia in February 2016. <br>It gives an overview of the ORCID integration at UNSW including the integration with Symplectic Elements, the ORCID Advisory Group and the ORCID integration strategy UNSW has developed.
DOI: 10.6084/m9.figshare.2220523.v4
title: ORCID Community day 2016 Presentation UNSW ORCID Integration

description: These are the slides for my lightning talk at the ORCID Outreach Meeting in Canberra Australia in February 2016. <br>It gives an overview of the ORCID integration at UNSW including the integration with Symplectic Elements, the ORCID Advisory Group and the ORCID integration strategy UNSW has developed.
DOI: 10.48370/ofd/mnwziw/ckq2e7
title: Exobasidium juelianum Nannf. F-3861.tif

description: :unav
DOI: 10.48370/ofd/mnwziw
title: Exobasidium juelianum Nannf., 3861

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.2951263.v350
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2951263.v349
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.48370/ofd/t6kmxe/ug1voe
title: Exobasidium juelianum Nannf. F-3643.tif

description: :unav
DOI: 10.48370/ofd/t6kmxe
title: Exobasidium juelianum Nannf., 3643

description: Fungarium Mikromycetes
DOI: 10.48370/ofd/llomll/mn2jmv
title: Exobasidium juelianum Nannf. F-3862.tif

description: :unav
DOI: 10.48370/ofd/llomll
title: Exobasidium juelianum Nannf., 3862

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.1619881.v2
title: Tabla 4.11 Frecuencias absolutas códigos grupo 3

description: Frecuencias absolutas códigos grupo 3Acosta-Silva, D. A. (2016, April 18). <i>La sensitividad cognitiva: hacia un modelo de su funcionamiento</i>. Tesis doctoral para optar al título de Doctor en Ciencias Sociales, Niñez y Juventud. Centro de Estudios Avanzados en Niñez y Juventud (Cinde), Universidad de Manizales http://doi.org/10.17605/OSF.IO/TZPF6
DOI: 10.6084/m9.figshare.1619881.v1
title: Tabla 4.18 Frecuencias absolutas códigos grupo 3

description: Frecuencias absolutas códigos grupo 3
DOI: 10.48370/ofd/efyspr/6xwwbl
title: Exobasidium juelianum Nannf. F-4372 (5).tif

description: :unav
DOI: 10.48370/ofd/efyspr/ebq9dm
title: Exobasidium juelianum Nannf. F-4372 (2).tif

description: :unav
DOI: 10.48370/ofd/efyspr/mqgefo
title: Exobasidium juelianum Nannf. F-4372.tif

description: :unav
DOI: 10.48370/ofd/efyspr/naw1i9
title: Exobasidium juelianum Nannf. F-4372 (3).tif

description: :unav
DOI: 10.48370/ofd/efyspr/spgwfh
title: Exobasidium juelianum Nannf. F-4372 (4).tif

description: :unav
DOI: 10.48370/ofd/efyspr
title: Exobasidium juelianum Nannf., 4372

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.3146692.v8
title: [Data Record 4]: DHPTMs

description: This file contains a table for each analysis of Differential Histone Post-translational modifications. Each table contains the following information:<br>1) coordinates of the target regions (chromosome, start and end positions, with strand information included for analyses for marks H3K4me3, H3K9ac, H3K27me3 and H3K79me3 based on transcription start sites and gene regions, and no strand information for marks H3K4me1 and H3K27ac based on peaks)<br>2) baseMean - average number of reads in region across all samples<br>3) log2FoldChange - log2 fold change between number of reads in treatment condition and in control condition<br>4) lfcSE - standard error of the log2 fold change<br>5) stat - Wald statistic used to calculate the p-value<br>6) pvalue - p-value associated with a particular region<br>7) padj - p-value adjusted using Benjamini & Hochberg adjustment<br><br><b>TABLE DESCRIPTION</b><br>List of all differential histone post-translational modifications (DHPTMs). Each tab of this document contains different compared conditions for time point 1h, tissue CA1, and each cell type (Neu or Non) and histone mark (H3K27AC, H3K27ME3, H3K4ME1, H3K4ME3, H3K79ME3 or H3K9AC). The compared conditions concern the different sets of mouse, N-C compares naïve (N) to context only (C) mice, N-CS compares naive (N) to context shock (CS) mice, and C-CS compares context only (C) to context shock (CS) mice. The columns 'chromosome', DHPTM start', 'DHPTM end' and 'Strand' contain the position in the genome where the DHPTM was detected (mm10 assembly). Each mark is analysed for different DHPTM region set, where H3K27ac and H3K4me1 are analysed for peaks, H3K27me3 and H3K79me3 are analysed for gene bodies and H3K4me3 and H3K9ac are analysed for TSS regions [-500,+1000] bases around the TSS (peak-based tests were run as strand-independant, so for such tests column 'Strand' contains '.' for all entries). Column 'baseMean' shows the average normalised read counts in each DHPTM and column 'logFC' shows the fold change of the comparison between the conditions in log 2. Columns 'pvalue' and 'p-adjust' contain the pvalue and the adjusted p-value according to the FDR test.<br>
DOI: 10.6084/m9.figshare.2075425.v1
title: Data neophytes: first steps into the research data abyss

description: This paper explores the roles, functions, and possible definitions of data librarians based on two Australian National Data Service (ANDS) case study projects at Monash University and Swinburne University of Technology. The experiences, challenges, and achievements from these research data management projects are examined by discussing the various factors involved, such as liaison with researchers and organisation stakeholders, and the implementation of technological solutions.<br>The presentation was delivered at the VALA 2016 Conference on 9 February 2016 at the Melbourne Convention and Exhibition Centre.
DOI: 10.6084/m9.figshare.2075425.v3
title: Data neophytes: first steps into the research data abyss

description: This paper explores the roles, functions, and possible definitions of data librarians based on two Australian National Data Service (ANDS) case study projects at Monash University and Swinburne University of Technology. The experiences, challenges, and achievements from these research data management projects are examined by discussing the various factors involved, such as liaison with researchers and organisation stakeholders, and the implementation of technological solutions.<br>The presentation was delivered at the VALA 2016 Conference on 9 February 2016 at the Melbourne Convention and Exhibition Centre.
DOI: 10.6084/m9.figshare.2075425.v2
title: Data neophytes: first steps into the research data abyss

description: This paper explores the roles, functions, and possible definitions of data librarians based on two Australian National Data Service (ANDS) case study projects at Monash University and Swinburne University of Technology. The experiences, challenges, and achievements from these research data management projects are examined by discussing the various factors involved, such as liaison with researchers and organisation stakeholders, and the implementation of technological solutions.<br>The presentation was delivered at the VALA 2016 Conference on 9 February 2016 at the Melbourne Convention and Exhibition Centre.
DOI: 10.6084/m9.figshare.3173014.v1
title: MH&S Faculty Conference - University of Nottingham 2013

description: Research Poster presented at The University of Nottingham MH&S Faculty Research Forum 2013
DOI: 10.48370/ofd/nwobuo/w5x9ix
title: Exobasidium juelianum Nannf. F-4376 (4).tif

description: :unav
DOI: 10.6084/m9.figshare.3168328.v2
title: Sesame GBS sequence and marker data

description: merged GBS tags and sample key files enable sequence data analysis.SNP alleles, locations, markers mapped to the linkage groups and information on polymorphic SSR markers are provided in excel files.<br>
DOI: 10.48370/ofd/nwobuo/bocatc
title: Exobasidium juelianum Nannf. F-4376 (2).tif

description: :unav
DOI: 10.6084/m9.figshare.3168328.v1
title: Sesame GBS sequence and marker data

description: merged GBS tags and sample key files enable sequence data analysis.SNP alleles, locations, markers mapped to the linkage groups and information on polymorphic SSR markers are provided in excel files.<br>
DOI: 10.48370/ofd/nwobuo/6fsd2j
title: Exobasidium juelianum Nannf. F-4376.tif

description: :unav
DOI: 10.48370/ofd/nwobuo/ekv5be
title: Exobasidium juelianum Nannf. F-4376 (3).tif

description: :unav
DOI: 10.48370/ofd/nwobuo/2z6xbv
title: Exobasidium juelianum Nannf. F-4376 (5).tif

description: :unav
DOI: 10.48370/ofd/nwobuo
title: Exobasidium juelianum Nannf., 4376

description: Fungarium Mikromycetes
DOI: 10.6084/m9.figshare.3146689.v8
title: [Data Record 3]: CRMs

description: <b>DESCRIPTION</b><br>Neuronal and non-neuronal cis-regulatory modules in tissues ACC and CA1 were predicted, together with their activity, using a discriminative random forest classifier RFECS that was trained on a published set of positive and negative transcription factor binding sites and histone post-translational modifications<br><br><b>TABLE DESCRIPTION</b><br> List of all predicted cis-regulatory modules (CRMs; in other words enhancers and other non-genic regulatory regions) in neuronal or non-neuronal data from the ACC or CA1 of naive mice. The tables includes the CRM coordinates and the RFECS probabilities for each CRM.<br>
DOI: 10.6084/m9.figshare.3146689.v7
title: [Data Record 3]: CRM predictions

description: <b>DESCRIPTION</b><br>Neuronal and non-neuronal cis-regulatory modules in tissues ACC and CA1 were predicted, together with their activity, using a discriminative random forest classifier RFECS that was trained on a published set of positive and negative transcription factor binding sites and histone post-translational modifications<br><br><b>TABLE DESCRIPTION</b><br> List of all predicted cis-regulatory modules (CRMs; in other words enhancers and other non-genic regulatory regions) in neuronal or non-neuronal data from the ACC or CA1 of naive mice. The tables includes the CRM coordinates and the RFECS probabilities for each CRM.<br>
DOI: 10.6084/m9.figshare.3146692.v10
title: [Data Record 4]: DHPTMs

description: <b>DESCRIPTION</b><br>This file contains a table for each analysis of Differential Histone Post-translational modifications. Each table contains the following information:<br>1) coordinates of the target regions (chromosome, start and end positions, with strand information included for analyses for marks H3K4me3, H3K9ac, H3K27me3 and H3K79me3 based on transcription start sites and gene regions, and no strand information for marks H3K4me1 and H3K27ac based on peaks)<br>2) baseMean - average number of reads in region across all samples<br>3) log2FoldChange - log2 fold change between number of reads in treatment condition and in control condition<br>4) lfcSE - standard error of the log2 fold change<br>5) stat - Wald statistic used to calculate the p-value<br>6) pvalue - p-value associated with a particular region<br>7) padj - p-value adjusted using Benjamini & Hochberg adjustment<br><br><b>TABLE DESCRIPTION (ORR)</b><br>This table contains a list of all differential histone post-translational modifications (DHPTMs). Each tab contains different compared conditions for time point 1h, tissue CA1, and each cell type (Neu or Non) and histone mark (H3K27AC, H3K27ME3, H3K4ME1, H3K4ME3, H3K79ME3 or H3K9AC). Each mark is analysed for different DHPTM region set, where H3K27ac and H3K4me1 are analysed for peaks, H3K27me3 and H3K79me3 are analysed for gene bodies and H3K4me3 and H3K9ac are analysed for TSS regions [-500,+1000] bases around the TSS. The compared conditions concern the different sets of mouse, N-C compares naïve (N) to context only (C) mice, N-CS compares naive (N) to context shock (CS) mice, and C-CS compares context only (C) to context shock (CS) mice.<br><br>The table contains the following columns:<br>1) 'chromosome', 'DHPTM start', 'DHPTM end' and 'Strand' contain the position in the genome where the DHPTM was detected (mm10 assembly) Peak-based tests (marks H3K27ac and H3K4me1) were run as strand-independant, so for such tests column 'Strand' contains '.' for all entries.<br>2) Column 'baseMean' shows the average normalised read counts in each DHPTM.<br>3) Column 'logFC' shows the fold change of the comparison between the conditions in log 2.<br>4) Columns 'pvalue' and 'p-adjust' contain the pvalue and the adjusted p-value according to the FDR test.<br>
DOI: 10.6084/m9.figshare.3146692.v9
title: [Data Record 4]: DHPTMs

description: <b>DESCRIPTION</b><br>This file contains a table for each analysis of Differential Histone Post-translational modifications. Each table contains the following information:<br>1) coordinates of the target regions (chromosome, start and end positions, with strand information included for analyses for marks H3K4me3, H3K9ac, H3K27me3 and H3K79me3 based on transcription start sites and gene regions, and no strand information for marks H3K4me1 and H3K27ac based on peaks)<br>2) baseMean - average number of reads in region across all samples<br>3) log2FoldChange - log2 fold change between number of reads in treatment condition and in control condition<br>4) lfcSE - standard error of the log2 fold change<br>5) stat - Wald statistic used to calculate the p-value<br>6) pvalue - p-value associated with a particular region<br>7) padj - p-value adjusted using Benjamini & Hochberg adjustment<br><br><b>TABLE DESCRIPTION (ORR)</b><br>This table contains a list of all differential histone post-translational modifications (DHPTMs). Each tab contains different compared conditions for time point 1h, tissue CA1, and each cell type (Neu or Non) and histone mark (H3K27AC, H3K27ME3, H3K4ME1, H3K4ME3, H3K79ME3 or H3K9AC). Each mark is analysed for different DHPTM region set, where H3K27ac and H3K4me1 are analysed for peaks, H3K27me3 and H3K79me3 are analysed for gene bodies and H3K4me3 and H3K9ac are analysed for TSS regions [-500,+1000] bases around the TSS. The compared conditions concern the different sets of mouse, N-C compares naïve (N) to context only (C) mice, N-CS compares naive (N) to context shock (CS) mice, and C-CS compares context only (C) to context shock (CS) mice.<br><br>The table contains the following columns:<br>1) 'chromosome', 'DHPTM start', 'DHPTM end' and 'Strand' contain the position in the genome where the DHPTM was detected (mm10 assembly) Peak-based tests (marks H3K27ac and H3K4me1) were run as strand-independant, so for such tests column 'Strand' contains '.' for all entries.<br>2) Column 'baseMean' shows the average normalised read counts in each DHPTM.<br>3) Column 'logFC' shows the fold change of the comparison between the conditions in log 2.<br>4) Columns 'pvalue' and 'p-adjust' contain the pvalue and the adjusted p-value according to the FDR test.<br>
DOI: 10.6084/m9.figshare.1409398.v219
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.
DOI: 10.6084/m9.figshare.1409398.v218
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and ABO(H) blood group phenotype formation becomes evident with the rare (Oh) or <i>Bombay</i> blood type, which based on the history of his own family, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), by which the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, while the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and via developmental variation of the positions between the cell surfaces and the heavy chains of immunoglobulins, fucosyl residues appear to augment or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signaling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leucospermic infertile men has been reported to exert high levels of poorly core-fucosylated IgG. Consequently, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation, which involve the modification and <i>O</i>-fucosylation of epidermal growth factor (EGF), are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins that might promote increased anti-self-reactive cytotoxicity.