cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1166537.v2
title: Flexible job shop with continuous material flow

description: A new scheduling problem, the continuous flow flexible job shop (CF-FJS) is proposed. The formulation combines the well-known flexible job shop (FJS) problem and a dedicated continuous material flow model (MFM). In the MFM, operations are represented by material flow functions derived by integration of arbitrarily defined speed patterns. Two main concepts of the MFM formalism, i.e. variable speed of processing and continuous material flow, lead to position-dependent processing times and overlapping in operations which extend standard FJS formulation. Properties of the CF-FJS are investigated. A tabu search sched uling algorithm utilising these properties is proposed. Effective neighbourhood functions are defined based on elimination approaches. Two auxiliary procedures: search intensification level switching and fast feasibility detection are added to improve algorithm efficiency. The algorithm is verified using dedicated benchmark instances which comprise non-trivial representations of the CF-FJS specific features, i.e. machine efficiency patterns and minimum inter-operation buffers. The research is motivated by task scheduling in a fastener factory, but the presented results can be useful in many domains, such as production of granular goods, steel details, glass and fluids. The solution can be used in real-world applications. The published results can be helpful in testing new CF-FJS scheduling algorithms.
DOI: 10.6084/m9.figshare.1166537.v1
title: Flexible job shop with continuous material flow

description: A new scheduling problem, the continuous flow flexible job shop (CF-FJS) is proposed. The formulation combines the well-known flexible job shop (FJS) problem and a dedicated continuous material flow model (MFM). In the MFM, operations are represented by material flow functions derived by integration of arbitrarily defined speed patterns. Two main concepts of the MFM formalism, i.e. variable speed of processing and continuous material flow, lead to position-dependent processing times and overlapping in operations which extend standard FJS formulation. Properties of the CF-FJS are investigated. A tabu search sched uling algorithm utilising these properties is proposed. Effective neighbourhood functions are defined based on elimination approaches. Two auxiliary procedures: search intensification level switching and fast feasibility detection are added to improve algorithm efficiency. The algorithm is verified using dedicated benchmark instances which comprise non-trivial representations of the CF-FJS specific features, i.e. machine efficiency patterns and minimum inter-operation buffers. The research is motivated by task scheduling in a fastener factory, but the presented results can be useful in many domains, such as production of granular goods, steel details, glass and fluids. The solution can be used in real-world applications. The published results can be helpful in testing new CF-FJS scheduling algorithms.
DOI: 10.6084/m9.figshare.1166502.v1
title: Myodocope ostracods from the Silurian of Australia

description: The Silurian of Australia contains at least three genera (one new, <i>Canalarta</i> gen. nov.) and three species (two new, <i>Canalarta papata</i> sp. nov. and <i>Bolbozoe beccata</i> sp. nov.) of myodocope ostracods. These fossils were recovered from clastic sedimentary deposits in the lower Silurian (probably Homerian) Walker Volcanics unit of New South Wales that may represent mudflow deposits. In having the youngest occurrence of <i>Entomozoe</i> aff. <i>tuberosa</i> and the oldest known <i>Bolbozoe</i> species, the Australian myodocopes represent a chronologically intermediate assemblage between previously known early and late Silurian myodocope faunas. Several fossil groups from the Silurian of Australia, such as ostracods, trilobites, brachiopods and corals, apparently have a cosmopolitan distribution at generic level. The presence of many continental and micro-continental landmasses that existed along and within the tropical pan-Tethyan seaway, together with the prevailing ocean circulation, could explain this distributional pattern. The depositional setting, sedimentary deposits and faunal associates do not provide conclusive evidence concerning the lifestyle of the Australian myodocopes. They could represent nektobenthic species, as has been suggested for other early to mid Silurian myodocopes, or hyperbenthic/pelagic species, as was proposed for known late Silurian forms.http://zoobank.org/urn:lsid:zoobank.org:pub:D49A6C9C-13A8-443A-8BD4-73C34C1D0630
DOI: 10.6084/m9.figshare.1166502.v2
title: Myodocope ostracods from the Silurian of Australia

description: The Silurian of Australia contains at least three genera (one new, <i>Canalarta</i> gen. nov.) and three species (two new, <i>Canalarta papata</i> sp. nov. and <i>Bolbozoe beccata</i> sp. nov.) of myodocope ostracods. These fossils were recovered from clastic sedimentary deposits in the lower Silurian (probably Homerian) Walker Volcanics unit of New South Wales that may represent mudflow deposits. In having the youngest occurrence of <i>Entomozoe</i> aff. <i>tuberosa</i> and the oldest known <i>Bolbozoe</i> species, the Australian myodocopes represent a chronologically intermediate assemblage between previously known early and late Silurian myodocope faunas. Several fossil groups from the Silurian of Australia, such as ostracods, trilobites, brachiopods and corals, apparently have a cosmopolitan distribution at generic level. The presence of many continental and micro-continental landmasses that existed along and within the tropical pan-Tethyan seaway, together with the prevailing ocean circulation, could explain this distributional pattern. The depositional setting, sedimentary deposits and faunal associates do not provide conclusive evidence concerning the lifestyle of the Australian myodocopes. They could represent nektobenthic species, as has been suggested for other early to mid Silurian myodocopes, or hyperbenthic/pelagic species, as was proposed for known late Silurian forms.http://zoobank.org/urn:lsid:zoobank.org:pub:D49A6C9C-13A8-443A-8BD4-73C34C1D0630
DOI: 10.6084/m9.figshare.1165613
title: Microsatellite data for Kosciuscola tristis

description: Microsatellite data for Kosciuscola tristis populations from New South Wales and Victoria. There are two datasets in the spreadsheet. The first contains the New South Wales populations, with eight typed loci. The second contains populations from both states, typed at five microsatellite loci.
DOI: 10.6084/m9.figshare.1165613.v2
title: Microsatellite data for Kosciuscola tristis

description: Microsatellite data for Kosciuscola tristis populations from New South Wales and Victoria. There are two datasets in the spreadsheet. The first contains the New South Wales populations, with eight typed loci. The second contains populations from both states, typed at five microsatellite loci.
DOI: 10.6084/m9.figshare.1165613.v1
title: Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis

description: Microsatellite data for Kosciuscola tristis populations from New South Wales and Victoria. There are two datasets in the spreadsheet. The first contains the New South Wales populations, with eight typed loci. The second contains populations from both states, typed at five microsatellite loci.
DOI: 10.6084/m9.figshare.1165595
title: Critical current characterisation of AMSC Amperium® 2G HTS superconducting wire

description: Detailed measurements of the critical current of a commercial 2G HTS YBCO wire as a function of temperature, magnetic field, and field angle, performed at the Robinson Research Institute of Victoria University of Wellington. This data is referenced in N. M. Strickland, C. Hoffmann, and S. C. Wimbush, <em>A 1 kA-class cryogen-free critical current characterization system for superconducting coated conductors</em>, Rev. Sci. Instrum. 85 (2014) 113907.
DOI: 10.6084/m9.figshare.1165591
title: Towards a unified framework for analyzing bacteria genomes

description: Poster at the 2014 Biology retreat in Helen Georgia
DOI: 10.6084/m9.figshare.1165589
title: Digital Imaging of Root Traits (DIRT) – An online high-throughput phenotyping platform for analysis of root images

description: Poster at the 2014 Biology Retreat in Helen Georgia
DOI: 10.6084/m9.figshare.1165591.v1
title: Towards a unified framework for analyzing bacteria genomes

description: Poster at the 2014 Biology retreat in Helen Georgia
DOI: 10.6084/m9.figshare.1165592
title: Infrastructure for managing and analyzing biological networks derived from collections of plant images

description: Poster at the "1st Workshop on Big Data Research and Development", Atlanta, USA (USA), April 15, 2013
DOI: 10.6084/m9.figshare.1165577
title: STRUCTURE script

description: STRUCTURE script for making 5kb haplotypes
DOI: 10.6084/m9.figshare.1165592.v1
title: Infrastructure for managing and analyzing biological networks derived from collections of plant images

description: Poster at the "1st Workshop on Big Data Research and Development", Atlanta, USA (USA), April 15, 2013
DOI: 10.6084/m9.figshare.1165578
title: Catalytic Etherification of Glycerol to Diglycerol Over Heterogeneous Calcium-Based Mixed-Oxide Catalyst: Reusability and Stability

description: The activities of different heterogeneous alkaline-earth metal oxide catalysts and mixed-metal oxide catalysts were investigated. Glycerol etherification was carried out at 250°C in a three-necked glass reactor vessel at atmospheric pressure. In a typical experiment, 50 g of anhydrous glycerol was loaded into the reactor. Then, 2 wt.% of catalyst was added to the reactor. The reactor was then heated to the appropriate reaction temperature in nitrogen atmosphere under continuous stirring. The heterogeneous CaO catalyst showed the highest catalytic conversion (72%) compared with other alkaline-earth metal oxides, with a diglycerol yield of 19%. The highest glycerol conversion of 96% and diglycerol yield of 52% were observed for the mixed-metal oxide catalyst (Ca<sub>1.6</sub>Al<sub>0.4</sub>La<sub>0.6</sub>O<sub>3</sub>). Reusability and stability of this catalyst were tested. The ICP-AES analysis was performed to confirm the leaching of the metal species in the liquid phase of the reaction mixture.
DOI: 10.6084/m9.figshare.1165575
title: Computing skeletons of plant networks for a sustainable society

description: Poster at the Gordon Conference for Image Science
DOI: 10.6084/m9.figshare.1165574
title: A system for recording 3D information with applications in the measurement of plant structure

description: Poster at the "4th International Workshop on Functional-Structural Plant Models" (FSPM04),
DOI: 10.6084/m9.figshare.1165577.v1
title: STRUCTURE script

description: STRUCTURE script for making 5kb haplotypes
DOI: 10.6084/m9.figshare.1165572
title: DynBio: An Educational Application to Facilitate the Instruction of Mathematical Modeling in Biology

description: Poster at the "8th International Conference on Bioinformatics", Atlanta,GA (USA), 10.-12. November 2011
DOI: 10.6084/m9.figshare.1165573
title: SoLID : An Online Community Database of Leaf Images

description: Poster at the "The Society for Mathematical Biology Annual Meeting and Conference", Knoxville,TN (USA), July 25-28, 2012
DOI: 10.6084/m9.figshare.1165575.v1
title: Computing skeletons of plant networks for a sustainable society

description: Poster at the Gordon Conference for Image Science
DOI: 10.6084/m9.figshare.1165573.v1
title: SoLID : An Online Community Database of Leaf Images

description: Poster at the "The Society for Mathematical Biology Annual Meeting and Conference", Knoxville,TN (USA), July 25-28, 2012
DOI: 10.6084/m9.figshare.1165572.v1
title: DynBio: An Educational Application to Facilitate the Instruction of Mathematical Modeling in Biology

description: Poster at the "8th International Conference on Bioinformatics", Atlanta,GA (USA), 10.-12. November 2011
DOI: 10.6084/m9.figshare.1165578.v3
title: Catalytic Etherification of Glycerol to Diglycerol Over Heterogeneous Calcium-Based Mixed-Oxide Catalyst: Reusability and Stability

description: The activities of different heterogeneous alkaline-earth metal oxide catalysts and mixed-metal oxide catalysts were investigated. Glycerol etherification was carried out at 250°C in a three-necked glass reactor vessel at atmospheric pressure. In a typical experiment, 50 g of anhydrous glycerol was loaded into the reactor. Then, 2 wt.% of catalyst was added to the reactor. The reactor was then heated to the appropriate reaction temperature in nitrogen atmosphere under continuous stirring. The heterogeneous CaO catalyst showed the highest catalytic conversion (72%) compared with other alkaline-earth metal oxides, with a diglycerol yield of 19%. The highest glycerol conversion of 96% and diglycerol yield of 52% were observed for the mixed-metal oxide catalyst (Ca<sub>1.6</sub>Al<sub>0.4</sub>La<sub>0.6</sub>O<sub>3</sub>). Reusability and stability of this catalyst were tested. The ICP-AES analysis was performed to confirm the leaching of the metal species in the liquid phase of the reaction mixture.
DOI: 10.6084/m9.figshare.1165556
title: Table4

description: Table 4. Performance Metrics. The threshold for EEG cortical distributions is set 90% at source for each subject. Data for these three metrics represent the average across all subjects.
DOI: 10.6084/m9.figshare.1165578.v2
title: Catalytic Etherification of Glycerol to Diglycerol Over Heterogeneous Calcium-Based Mixed-Oxide Catalyst: Reusability and Stability

description: The activities of different heterogeneous alkaline-earth metal oxide catalysts and mixed-metal oxide catalysts were investigated. Glycerol etherification was carried out at 250°C in a three-necked glass reactor vessel at atmospheric pressure. In a typical experiment, 50 g of anhydrous glycerol was loaded into the reactor. Then, 2 wt.% of catalyst was added to the reactor. The reactor was then heated to the appropriate reaction temperature in nitrogen atmosphere under continuous stirring. The heterogeneous CaO catalyst showed the highest catalytic conversion (72%) compared with other alkaline-earth metal oxides, with a diglycerol yield of 19%. The highest glycerol conversion of 96% and diglycerol yield of 52% were observed for the mixed-metal oxide catalyst (Ca<sub>1.6</sub>Al<sub>0.4</sub>La<sub>0.6</sub>O<sub>3</sub>). Reusability and stability of this catalyst were tested. The ICP-AES analysis was performed to confirm the leaching of the metal species in the liquid phase of the reaction mixture.
DOI: 10.6084/m9.figshare.1165554
title: A Well-circumscribed Border with Peripheral Doppler Signal in Sonographic Image Distinguishes Epithelioid Trophoblastic Tumor from Other Gestational Trophoblastic Neoplasms

description: Figure S1. Ultrasound images of 12 ETT cases. Ten out of twelve patients had one detectable uterine lesion in ultrasound images, while Case 10 had two uterine lesions and Case 9 had metastasis lesion in the inguinal lymph node. On gray-scale images, the lesions appeared heterogeneously solid or cystic-solid masses with clear border. On Color Doppler images, the relatively more Doppler signal spots formed by blood flow were distributed at the peripheral tumors, while fewer signal spots were showed within the boundary of tumors, which is named as “peripheral Doppler signal”. Figure S2. Ultrasound images of 21 PSTT cases. Each patient had one detectable uterine lesion in ultrasound images. On gray-scale images, the lesions appeared heterogeneously solid, cystic or cystic-solid masses with unclear border. On Color Doppler images, the Doppler signal presented within the boundary of tumors rather than at the peripheries, which is named as “non-peripheral Doppler signal”. Figure S3. Ultrasound images of 24 IM/CC cases. 16 patients had one detectable uterine lesion, which showed heterogeneously solid or cystic-solid masses with unclear border on gray-scale images, and more Doppler signal spots were distributed within the boundary of tumors, or throughout the whole tumors, which is named as “non-peripheral Doppler signal”. Other 8 cases (Cases 2,3,7,8,10,12,14 and 17) had no detectable lesion in the uterus. Figure S4. Histological images of 12 ETT cases. Cases 1, 5, 7, 10 and 11 were stained with H&E but not immunohistochemistry; Cases 3, 4, 6, 9 and 12 were stained with H&E (left) and p63 (right); Cases 2 and 8 were stained with H&E (left) and hPL (right). H&E staining profile showed an expansile growth pattern with pushing border, and extensive necrosis presented within the boundary. Immunohistochemical staining showed positive nuclear expression of p63 but negative cytoplasmic hPL. Figure S5. Histological images of 21 PSTT cases. Cases 1, 11, 13 and 20 were stained with H&E but not immunohistochemistry; Cases 2-10, 14, 16, 18, 19 and 21 were stained with H&E (left) and hPL (right); Case 12 and 17 were stained with H&E (left) and p63 (right), Case 15 was stained with H&E (left) and CD146 (right). H&E staining profile showed an infiltrating growth pattern with the penetration of tumor cells into the myometrial smooth muscle fibers and blood vessels. Immunohistochemical staining showed positive cytoplasmic hPL and CD146, but negative nuclear p63.
DOI: 10.6084/m9.figshare.1165556.v1
title: Table4

description: Table 4. Performance Metrics. The threshold for EEG cortical distributions is set 90% at source for each subject. Data for these three metrics represent the average across all subjects.
DOI: 10.6084/m9.figshare.1165554.v1
title: A Well-circumscribed Border with Peripheral Doppler Signal in Sonographic Image Distinguishes Epithelioid Trophoblastic Tumor from Other Gestational Trophoblastic Neoplasms

description: Figure S1. Ultrasound images of 12 ETT cases. Ten out of twelve patients had one detectable uterine lesion in ultrasound images, while Case 10 had two uterine lesions and Case 9 had metastasis lesion in the inguinal lymph node. On gray-scale images, the lesions appeared heterogeneously solid or cystic-solid masses with clear border. On Color Doppler images, the relatively more Doppler signal spots formed by blood flow were distributed at the peripheral tumors, while fewer signal spots were showed within the boundary of tumors, which is named as “peripheral Doppler signal”. Figure S2. Ultrasound images of 21 PSTT cases. Each patient had one detectable uterine lesion in ultrasound images. On gray-scale images, the lesions appeared heterogeneously solid, cystic or cystic-solid masses with unclear border. On Color Doppler images, the Doppler signal presented within the boundary of tumors rather than at the peripheries, which is named as “non-peripheral Doppler signal”. Figure S3. Ultrasound images of 24 IM/CC cases. 16 patients had one detectable uterine lesion, which showed heterogeneously solid or cystic-solid masses with unclear border on gray-scale images, and more Doppler signal spots were distributed within the boundary of tumors, or throughout the whole tumors, which is named as “non-peripheral Doppler signal”. Other 8 cases (Cases 2,3,7,8,10,12,14 and 17) had no detectable lesion in the uterus. Figure S4. Histological images of 12 ETT cases. Cases 1, 5, 7, 10 and 11 were stained with H&E but not immunohistochemistry; Cases 3, 4, 6, 9 and 12 were stained with H&E (left) and p63 (right); Cases 2 and 8 were stained with H&E (left) and hPL (right). H&E staining profile showed an expansile growth pattern with pushing border, and extensive necrosis presented within the boundary. Immunohistochemical staining showed positive nuclear expression of p63 but negative cytoplasmic hPL. Figure S5. Histological images of 21 PSTT cases. Cases 1, 11, 13 and 20 were stained with H&E but not immunohistochemistry; Cases 2-10, 14, 16, 18, 19 and 21 were stained with H&E (left) and hPL (right); Case 12 and 17 were stained with H&E (left) and p63 (right), Case 15 was stained with H&E (left) and CD146 (right). H&E staining profile showed an infiltrating growth pattern with the penetration of tumor cells into the myometrial smooth muscle fibers and blood vessels. Immunohistochemical staining showed positive cytoplasmic hPL and CD146, but negative nuclear p63.
DOI: 10.6084/m9.figshare.1165523
title: Forming competitively balanced teams

description: This article examines the problem of assigning individuals to teams to make the teams as similar as possible to each other across multiple attributes. This may be complicated by a variety of constraints, including restrictions on whether specific individuals can or should be assigned to the same team. The problem arises in multiple contexts, including youth recreation leagues and academic programs or courses with mandated project groups. A model for the problem is proposed and various solution approaches are investigated, including mixed-integer programming and several heuristics. Supplementary materials are available for this article. Go to the publisher’s online edition of <i>IIE Transactions</i> for datasets, additional tables, detailed proofs, etc.
DOI: 10.6084/m9.figshare.1165523.v4
title: Forming competitively balanced teams

description: This article examines the problem of assigning individuals to teams to make the teams as similar as possible to each other across multiple attributes. This may be complicated by a variety of constraints, including restrictions on whether specific individuals can or should be assigned to the same team. The problem arises in multiple contexts, including youth recreation leagues and academic programs or courses with mandated project groups. A model for the problem is proposed and various solution approaches are investigated, including mixed-integer programming and several heuristics. Supplementary materials are available for this article. Go to the publisher’s online edition of <i>IIE Transactions</i> for datasets, additional tables, detailed proofs, etc.
DOI: 10.6084/m9.figshare.1165493
title: Synapse DREAM Challenges Poster

description: Posters describing the Synapse platform for collaborative data analysis and the DREAM 9 challenges. These posters were displayed at the 2014 Galaxy Community Conference.
DOI: 10.6084/m9.figshare.1165488
title: A new species of the parareptile genus <i>Delorhynchus</i>, based on articulated skeletal remains from Richards Spur, Lower Permian of Oklahoma

description: ABSTRACTDescription of a new species of the parareptile genus <i>Delorhynchus</i> is based on a well-preserved partial subadult skeleton, an isolated adult skull, and disarticulated elements recently collected from the Lower Permian Richards Spur locality of Oklahoma, U.S.A. <i>Delorhynchus cifellii</i>, sp. nov., is distinguished from <i>Delorhynchus priscus</i> by the lack of an accessory articulating anterodorsal flange of the maxilla. The hypodigm of <i>Delorhynchus cifellii</i> reveals that <i>Delorhynchus</i> is distinguished from other parareptiles by cranial dermal sculpture consisting of a system of low, smooth tuberosities and a pattern of diffuse shallow, circular dimples. In a phylogenetic analysis of parareptiles, <i>Delorhynchus cifellii</i> is positioned as the sister species of Lanthanosuchoidea. Recognition of <i>Delorhynchus cifellii</i>, sp. nov., and its phylogenetic position among parareptiles highlights the significance of the Richards Spur locality in our understanding of the early evolutionary history of reptiles.SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP