cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23992476.v1
title: InVERT final results

description: Primary human bronchial epithelial cells were differentiated at air liquid interface for 3 weeks in Pneumacult media. Infected cells were infected with Cal/07/09 and harvested at 6 and 12 hours post-infection. After harvest, cells were sorted into ciliated and secretory cells via FACS and submitted for stranded RNAseq. Mock infected cells were also included as a control and sorted into ciliated and secretory cells for stranded RNAseq. N=4 replicates were included for each condition.Raw sequencing data has been deposited on NCBI under BioProject number XXXX. RNAseq data was processed with the InVERT pipeline. The final results are included in these files.
DOI: 10.6084/m9.figshare.24155487.v1
title: Supplementary Material for: Documented Reperfusion of the Retina on Fluorescein Angiography after Administration of Intravenous Prostaglandin E1 for Central Retinal Artery Occlusion: A Case Report

description: Central retinal artery occlusion (CRAO) can result in devastating permanent vision loss. Presently, there is no evidence-based treatment for CRAO that is widely accepted. In the literature, multiple studies propose intravenous prostaglandin E1 (IV PGE1) as a potential treatment option for patients with CRAO. We illustrate two cases of CRAO successfully treated with IV PGE1. In both cases, our patients with vascular risk factors were diagnosed with CRAO of the left eye. They were started on twice daily intravenous (IV) 40 mcg PGE1 in 100 mL normal saline, with each dose administered over three hours. In the first case, we documented reperfusion of the retina on fluorescein angiography after administration of IV PGE1. In the second case, our patient improved from no light perception (NLP) visual acuity (VA) to count fingers (CF) VA within 48 hours of treatment with IV PGE1. Our study highlights the vasodilatory effect of IV PGE1. Due to its mechanism of action and safety profile, it should be considered a potential treatment option for CRAO. Further randomized controlled trials are necessary to determine the overall therapeutic effect of IV PGE1 for CRAO.
DOI: 10.6084/m9.figshare.25164839.v1
title: 输电线路

description: 传输线的图像数据集
DOI: 10.6084/m9.figshare.5514403.v1
title: SNP dataset for A. thaliana 1001 Genomes project

description: SNP database files generated using SNPmatch from published 1001 genomes SNPs
DOI: 10.6084/m9.figshare.23899299.v1
title: Data and code for "<b>An evolutionary timescale for Bacteria calibrated using the Great Oxidation Event</b>"

description: Data and code for "<b>An evolutionary timescale for Bacteria calibrated using the Great Oxidation Event</b>"
DOI: 10.6084/m9.figshare.28561148.v2
title: DNA methylation profiling of cervical cancer

description: DNA methylation profiling of cervical cancer
DOI: 10.6084/m9.figshare.28649120.v1
title: CORMIX Scoping Review

description: This repository contains the scoping review data that informed the development of the COnsolidated Checklist for Reporting MIXed Methods Research (CORMIX). The data comprises items extracted from relevant literature on mixed methods research reporting.This dataset was generated from a comprehensive scoping review of literature related to mixed methods research reporting standards. The scoping review was conducted across multiple databases including PubMed, EMBASE, PsycINFO, ERIC, CINAHL, ProQuest, and SCOPUS, as well as reviewer's guidelines of major journals and grey literature. The search period covered database inception until September 2024.
DOI: 10.6084/m9.figshare.28760984.v1
title: Supplementary Material for: Renal ischemia induces ER-stress and impairs the reparative potency of scattered tubular-like cells

description: Background: CD24+/CD133+ scattered tubular-like cells (STCs) are surviving renal cells that acquire progenitor-like characteristics to repair other damaged kidney cells. Renal artery stenosis (RAS) impairs the reparative capacity of STCs, but the underlying mechanisms remain unknown. STCs contain abundant endoplasmic reticulum (ER), but its capacity to fold proteins could become saturated (ER-stress), leading to STC dysfunction. We hypothesized that RAS alters the expression of genes implicated in ER-stress in swine STCs. Methods: STCs were harvested from pig kidneys after 10 weeks of RAS or sham (n=6 each) and expression of ER-stress genes was assessed using mRNA-seq (n=3 each). To elucidate mechanisms regulating ER-stress genes in RAS-STCs, integrated mRNA-seq/microRNA (miRNA)-seq and transcription factor (TF) prediction analysis were performed. STC ER-stress was assessed in vitro using western blotting, serial block-face electron microscopy, and mass-spectrometry. The involvement of ER-stress in regulating the STC-protective effects was also assessed in vitro by their capacity to improve viability of injured human tubular epithelial cells. Results: RAS pigs developed significant renal dysfunction. mRNA-seq identified 25 ER-stress genes upregulated and 30 downregulated in RAS-STCs versus Normal-STCs. miRNAs were found to target over a third of all differentially expressed ER-stress genes, and almost half of genes encoding for the top 50 TFs involved in regulation of ER-stress genes were dysregulated in RAS-STCs. RAS-STCs exhibited higher ER-stress compared to Normal-STCs, reflected in significant ER dilation and formation of ER-mitochondria contacts, and increased levels of ER-stress-related amino acids. Importantly, ER-stress inhibition improved the reparative capacity of RAS-STCs in vitro. Conclusion: Renal ischemia alters expression of ER-stress-related genes in swine STCs, likely through post-transcriptional- and TF-regulatory mechanisms, which induces ER-stress and impairs their reparative potency. These alterations may limit the potential of STCs to repair damaged kidneys in subjects with RAS.
DOI: 10.17632/9ck45zhk7x
title: Dataset Leonova T.

description: Research Data for master's dissertation on the topic 'The impact of the environmental, social and corporate governance factors on company market value'. Researcher Leonova Tatiana.
DOI: 10.17632/xz96ff3h7h
title: Database INMET's for 54 conventional stations in Brazil

description: Wind speed data are collected from INMET's network of conventional stations and made available by the project “Meteorological Database for Teaching and Research (BDMEP)” ( https://bdmep.inmet.gov.br/ ). Originally, data were collected at 3 synoptic times (0000, 1200, and 1800 UTC) and then averages of these three times across the database were calculated. Therefore, the temporal sampling of the analyzed series is daily, and the period of analysis was 60 years, starting on January 1, 1961, and ending on December 31, 2020.
Among the existing multiple imputation techniques, the bootstrap expectation maximization (EM) algorithm was chosen, which imputes the missing observations by estimates generated by the EM algorithms implemented in several bootstrap samples of the data. To assess the quality of the imputed data, the data set from each station was divided into 3 groups according to the percentage of missing data: Group 1 (0-10%); Group 2 (11-20%); Group 3 (21-30%). The evaluation of the imputation method was carried out through descriptive analysis, using the boxplot graph and measures such as minimum, maximum, first and third quartile, median, mean and standard deviation.
To verify equality between the means and medians of the imputed faulty data, Student's t tests and Wilcoxon were used, respectively. When the p-value associated with each test was greater than the significance level, the equality hypothesis was rejected. Both tests were performed at a 5% significance level. For the analysis of a comparison between the two climatologies, only the data referring to the meteorological stations in which the statistical tests detected equality of means and medians between the imputed and faulty data were used.
We applied a filter to exclude time series with a number of failures greater than 30%, leaving, therefore, 54 weather stations. The states of Acre (AC), Rondônia (RO), Amapá (AP), Mato Grosso do Sul (MS), Alagoas (AL), Espírito Santo (ES), Piaui (PI), Pernambuco (PE), Alagoas (AL) and Santa Catarina (SC) do not have meteorological stations that passed the criteria established in the study.
DOI: 10.17632/y9hz464469
title: A computational approach for the analytical solving of partial differential equations

description: Abstract A strategy for the analytical solving of partial differential equations and a first implementation of it as the PDEtools software package of commands, using the Maple V R.3 symbolic computing system, are presented. This implementation includes a PDE-solver, a command for changing variables and some other related tool-commands. Title of program: PDEtools Catalogue Id: ADBY_v1_0 Nature of problem Analytical solving of partial differential equations (PDEs). Versions of this program held in the CPC repository in Mendeley Data ADBY_v1_0; PDEtools; 10.1016/0010-4655(95)00083-R This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/yvnywkjzv6
title: Data for: Map-based cloning of qBWT-c12 discovered brassinosteroid-mediated control of organ size regulation in cotton

description: This is the supporting data related to our manuscript.
DOI: 10.6084/m9.figshare.1296109.v1
title: Protein Folding and Non-Covalent Interactions Lectures

description: These six lectures examine the different non-covalent interactions present in proteins, such as hydrogen bonding, van der Waals interactions and the htdrophobic effect, and how these lead to proteins folding repeatability into unique structures.
DOI: 10.17632/w8bc85x9b4
title: Dataset - On exploiting Reinforcment Learning To Test Virtual Reality Software

description: labpackage producced during the conduction of empirical validation presented in the paper "On exploiting Reinforcment Learning To Test Virtual Reality Software". Please procced to the paper or contact the authors for futher clarifications.
DOI: 10.6084/m9.figshare.24225994.v1
title: Supplementary Material for: Survival Outcome Analysis of Stereotactic Body Radiotherapy and Immunotherapy (SBRT-IO) versus SBRT-alone in Unresectable Hepatocellular Carcinoma (HCC)

description: Introduction While combination of stereotactic body radiotherapy (SBRT) and immunotherapy are promising, their efficacy and safety have not been compared with SBRT-alone in patients with unresectable HCC. Methods This retrospective study included 100 patients with non-metastatic, unresectable HCC in two hospitals. Eligible patients had tumor nodules ≤ 3 and Child-Pugh liver function score of A5 to B7. Seventy patients received SBRT-alone, and 30 patients underwent combined SBRT and immunotherapy (SBRT-IO). Overall survival (OS), time to progression (TTP), overall response rate (ORR), and toxicity were analyzed. We adjusted for the potential confounding factors using propensity score matching. Results The median tumor size was 7.3 cm (range, 2.6 – 18 cm). Twenty-five (25%) of patients had vascular invasion. Before propensity score matching, the 1-year and 3-year OS rate was 89.9% and 59.8% in the SBRT-IO group and 75.7% and 42.3% in SBRT-alone group (p=0.039). After propensity score matching (1:2), 25 and 50 patients were selected from the SBRT-IO and SBRT-alone group. The 1-year and 3-year OS was 92.0% and 63.9% in the SBRT-IO group versus 74.0% and 43.3% in the SBRT-alone group (p=0.034). The 1-year and 3-year TTP was better in SBRT-IO group (1-year: 68.9% versus 58.9% and 3-year: 61.3% versus 32.5%, p=0.057). The ORR of 88% (CR: 56%, PR: 22%) in SBRT-IO arm was significantly better than 50% (CR: 20%, PR: 30%) in the SBRT-alone arm (p=0.006). Three patients (12%) developed ≥ grade 3 immune-related treatment adverse events (n=2 hepatitis, n=1 dermatitis) leading to permanent treatment discontinuation. Discussion / Conclusion Adding immunotherapy to SBRT resulted in better survival with manageable toxicities. Prospective randomized trial is warranted.
DOI: 10.6084/m9.figshare.28821044.v1
title: LC-MS/MS data

description: Unique protein cofactors interacting with AhR-bound Stc2 promoter (XRE region 2 and 4 only) in response to cinnabarinic acid treatment (thrice a week, Monday/Wednesday/Friday) in livers of 16 week high-fat diet fed mice.
DOI: 10.6084/m9.figshare.9764984.v1
title: DL2859 cell and nucleoid mesh_MW.mat

description: MATLAB file containing Oufti software generated cell (phase contrast) and nucleoid (DAPI/'object') meshes for DL2859. <br>Data for 4 biological repeats are concatenated.Biological Repeat 1 = frames 1 -70Biological Repeat 2 = frames 71 - 160Biological Repeat 3 = frames 161 - 260<br>Biological Repeat 4 = frames 261 - 415<br>
DOI: 10.6084/m9.figshare.7212392.v1
title: Supplementary Material for: Diabetes, but Not Hypertension and Obesity, Is Associated with Postoperative Cognitive Dysfunction

description: <b><i>Background/Aims:</i></b> Older people undergoing surgery are at risk of developing postoperative cognitive dysfunction (POCD), but little is known of risk factors predisposing patients to POCD. Our objective was to estimate the risk of POCD associated with exposure to preoperative diabetes, hypertension, and obesity. <b><i>Methods:</i></b> Original data from 3 randomised controlled trials (OCTOPUS, DECS, SuDoCo) were obtained for secondary analysis on diabetes, hypertension, baseline blood pressure, obesity (BMI ≥30 kg/m<sup>2</sup>), and BMI as risk factors for POCD in multiple logistic regression models. Risk estimates were pooled across the 3 studies. <b><i>Results:</i></b> Analyses totalled 1,034 patients. POCD occurred in 5.2% of patients in DECS, in 9.4% in SuDoCo, and in 32.1% of patients in OCTOPUS. After adjustment for age, sex, surgery type, randomisation, obesity, and hypertension, diabetes was associated with a 1.84-fold increased risk of POCD (OR 1.84; 95% CI 1.14, 2.97; <i>p</i> = 0.01). Obesity, BMI, hypertension, and baseline blood pressure were each not associated with POCD in fully adjusted models (all <i>p</i> &gt; 0.05). <b><i>Conclusion:</i></b> Diabetes, but not obesity or hypertension, is associated with increased POCD risk. Consideration of diabetes status may be helpful for risk assessment of surgical patients.
DOI: 10.6084/m9.figshare.19499243.v1
title: patches and local annotations, slide 165, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28378148.v1
title: Castles and palaces

description: Castles and palaces_dataset
DOI: 10.6084/m9.figshare.28639481.v1
title: Supplementary Material for: Integrating DCPR-R and DSM-5 into clinical psychosomatic practice in Taiwan: Their relationship with psychopathologies and quality of life

description: Introduction: This study aimed to assess the benefit of integrating the Diagnostic Criteria for Psychosomatic Research-Revised (DCPR-R) into the Diagnostic and Statistical Manual of Mental Disorders Fifth Edition (DSM-5). Specifically, it examined whether this integration enhances the understanding of psychopathologies and quality of life (QOL) in psychosomatic medicine.
Methods: In this cross-sectional study conducted in Taiwan, 277 patients from psychosomatic clinics and 225 community participants were included. Standardized interview tools based on DCPR-R and DSM-5 were used to assess the presence of various diagnoses. Participants also completed several scales related to persistent somatic symptoms, negative emotions, and QOL. Latent class analysis was used to explore the clustering of diagnoses, and multiple linear regression analysis was employed to investigate the relationship between diagnoses, psychopathologies, and QOL under conditions of possible comorbidity.
Results: Three classes were identified via latent class analysis: somatic symptoms, demoralization and stress, and insomnia. In the multivariate analysis considering multiple diagnoses simultaneously, the number of diagnoses significantly associated with psychopathologies and QOL was greatly reduced compared to the univariate analysis. Persistent somatization was more strongly associated with somatic distress than somatic symptom disorder. Several DCPR-R constructs showed significant associations with illness-related anxiety. The DCPR-R diagnoses with broader influences on QOL were demoralization, demoralization with hopelessness, and irritable mood.
Conclusions: The results suggest the potential clinical significance of integrating DCPR-R and DSM-5 in Eastern societies. The DCPR-R diagnoses with significant findings mentioned above may contribute to the personalized treatment plans for patients in psychosomatic medicine.
DOI: 10.17632/9rck24h9bw
title: Tetracapsuloides bryosalmonae and proliferative kidney disease in Icelandic salmonids - data from two different time periods: datasets and R-code for statistical analysis

description: The datasets and R-code published here are part of a paper published in the International Journal for Parasitology. The aim of this study was to investigate the distribution and prevalence of macroscopic and subclinical Tetracapsuloides bryosalmonae (T.b.) infections in Icelandic salmonids and compare the effects of different time periods, lake depth, altitude, lake area, lake volume, salmonid species and age. Arctic charr (Salvelinus alpinus) and brown trout (Salmo trutta) from 34 lakes all around Iceland, sampled between 1994-1998 and 2009-2017, were examined for macroscopic signs of proliferative kidney disease (PKD) and the presence of T.b. infections. This is the first study to present data showing the effect of global warming on the emergence of PKD. In Iceland the distribution of T.b has increased in the last two decades and disease symptoms (PKD) which were hardly seen before have become common. 

T. bryosalmonae datasets:
- "Period_1_tbs.csv" contains prevalence of T. bryosalmonae in 1994-1998, fish species and age, as well as environmental characteristics.
- "Period_2_tbs.csv" contains prevalence of T. bryosalmonae in 2009-2017, fish species and age, as well as environmental characteristics. 
- "Period_1_2_tbs.csv" contains prevalence of T. bryosalmonae in all lakes from both periods, fish species and age, as well as environmental characteristics. 
- "Period_2_pkd.csv" contains prevalence of PKD symptoms (column designated "Symptoms"), grading of macroscopic symptoms (column designated "Macro"), fish species and age, as well as environmental characteristics. 
- "Same_Lake_tbs.csv" contains prevalence of T. bryosalmonae in the six lakes sampled in both periods, fish species and age, as well as environmental characteristics. 
-"Lake type_pca.csv" contains lake environmental characteristics: Altitude (m.a.s.l), Depth (mean), Area (km2) and Volume (million m3).
"IJPara22_011R1_Analysis.R" contains the R-code for the statistical analysis of the above datasets for the study. Includes code for t.tests, Wilcoxon rank sum test, generalized linear models, stepwise model selection and exploration of variance inflation factor.
DOI: 10.17632/ryyxt8jhb8
title: Data for: L1 - L2 semantic and syntactic processing: the influence of language proximity

description: This data set includes semantic and syntactic word strings to test L2 Japanese and Italic Indo-European learners of English on their reaction time and accuracy for determining correct and incorrect strings. The syntactic word strings were designed to mirror the semantic strings in terms of the vocabulary used at the 1 thousand frequency band from the British National Corpus.
DOI: 10.6084/m9.figshare.21704216.v2
title: Fig.2_nt.seq.alignment.fasta related to manuscript "A Recent Gibbon Ape Leukemia Virus Germline Integration in a Rodent from New Guinea"

description: MAFFT nucleotide sequence alignment which corresponds to the main Fig. 2. <br>
DOI: 10.17632/6p38bdctr2
title: WNT11 and CytoF data

description: Liver metastasis (LM) poses a significant challenge in cancer treatment, with limited therapeutic options and poor prognosis. Understanding the tumor microenvironment (TME) dynamics and immune interactions is crucial for developing effective treatments. Here, we found that WNT11 promoted CD8+ T cell exclusion and suppression and correlated with poor prognosis in liver metastases. Mechanistically, WNT11-overexpressing tumor cells directly reduced CD8+ T cell recruiting and activity via decreasing CXCL10 and CCL4 expression through CAMKII-mediated β-catenin/AFF3 downregulation. Otherwise, WNT11-overexpressing tumor cells promoted immunosuppressive macrophage polarization by inducing IL17D expression via CAMKII/NFκB pathway, which leading to CD8+ T cell suppression. Moreover, CAMKII inhibition potentiated the efficacy of anti-PD-1 therapy in mouse liver metastasis model. Serum WNT11 was identified as a potential minimally invasive biomarker in the management of CRC-LM with immunotherapy. Our findings highlight WNT11/CAMKII axis as a critical regulator of TME and a promising target for immunotherapy in liver metastasis.
DOI: 10.6084/m9.figshare.22247866.v2
title: Supplementary Dataset for Zhang et al., 2023, GRL, <em>https://doi.org/10.1029/2023GL103633</em>

description: Major element, Sr-Nd isotopes, and dust flux data of Lake Tuofengling (TFL), northeastern China in this study as well as the previously published major element and Sr-Nd isotopes data of potential source areas of dust in Lake TFL sediments.
DOI: 10.6084/m9.figshare.25911742.v2
title: Supplementary Data for "The role of detachment faulting in the genesis of oceanic felsic melts" by Zhang et al.

description: Supplementary Data 1–16.
DOI: 10.6084/m9.figshare.3559662.v1
title: Appendix A. Model description and parameterization details.

description: Model description and parameterization details.
DOI: 10.6084/m9.figshare.7033481.v1
title: Data.xlsx

description: Quanyin Hu et al. Dataset for [Conjugation of haematopoietic stem cells and platelets decorated with anti-PD-1 antibodies augments anti-leukaemia efficacy].
DOI: 10.6084/m9.figshare.157059.v2
title: Experiment 3: perceived size of test and reference arrays at high and low spatial frequency

description: For the control conditions, the rows of data indicate the proportion of times participants perceived a unbound test array as being larger than a fixed unbound reference array. For the binding ring conditions, the rows of indicate the proportion of times participants perceived a binding ring array as being larger than a fixed unbound reference array. In the high spatial frequency (HSF condition), both arrays were high-pass filtered. In the low spatial frequency (LSF) condition, both arrays were low-passed filtered. Each proportion was calculated from 20 trials.
DOI: 10.6084/m9.figshare.21548328.v1
title: Body Image data with NEO.sav

description: Data from online questionnaire about body-image and personality from 2019 which content answers from athletes, recreational athletes and nonathletes aged 18 to 30 years old.