cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14276132
title: Morphological and physiological properties of hybrid rice seeds with top-gray chalkiness

description: ABSTRACT Hybrid rice seeds from sterile lines have displayed a new type of heavy chalkiness in the subtropical zone of China in recent years, which was named top-gray chalkiness, resulting in a lower quality of hybrid rice seeds in large-scale production. In this study, the morphological characteristics of the chalky hybrid rice seeds were investigated, the microscopic structures of their chalky parts observed, the α-amylase activit and relative nutrient content analyzed, and the germination indexe and microorganism populations of the chalky hybrid seeds determined. The results revealed that top-gray chalkiness in hybrid rice seeds originated from the top site of the grain, and that the chalky part was probably infected by bacteri and fungi to form a gray colo and which further resulted in a lower germination rat and germination potential. This observed chalkiness in rice seeds differed from the previously reported rice chalkiness categories both in the occurrence positio and color. Besides, the amylopectin content declined in the chalky par and the protein content in the chalky part increased as compared to the normal seeds. This research could provide technical support for the hybrid rice breeding enterprises during the breeding of hybrid rice seeds in large-scale production.
DOI: 10.6084/m9.figshare.7460396
title: Additional file 1: of Transcriptome reprogramming during severe dehydration contributes to physiological and metabolic changes in the resurrection plant Haberlea rhodopensis

description: Table S1. Summary of transcriptomic data of de novo assembly of fresh, dehydrated and rehydrated Haberlea rhodopensis. (XLSX 10â kb)
DOI: 10.6084/m9.figshare.13227312.v1
title: A VASt-domain protein regulates autophagy, membrane tension, and sterol homeostasis in rice blast fungus

description: Sterols are a class of lipids critical for fundamental biological processes and membrane dynamics. These molecules are synthesized in the endoplasmic reticulum (ER) and are transported bi-directionally between the ER and plasma membrane (PM). However, the trafficking mechanism of sterols and their relationship with macroautophagy/autophagy are still poorly understood in the rice blast fungus <i>Magnaporthe oryzae</i>. Here, we identified the VAD1 Analog of StAR-related lipid transfer (VASt) domain-containing protein MoVast1 via co-immunoprecipitation in <i>M. oryzae</i>. Loss of <i>MoVAST1</i> resulted in conidial defects, impaired appressorium development, and reduced pathogenicity. The MoTor (target of rapamycin in <i>M. oryzae</i>) activity is inhibited because MoVast1 deletion leads to high levels of sterol accumulation in the PM. Site-directed mutagenesis showed that the 902 T site is essential for localization and function of MoVast1. Through filipin or Flipper-TR staining, autophagic flux detection, MoAtg8 lipidation, and drug sensitivity assays, we uncovered that MoVast1 acts as a novel autophagy inhibition factor that monitors tension in the PM by regulating the sterol content, which in turn modulates the activity of MoTor. Lipidomics and transcriptomics analyses further confirmed that MoVast1 is an important regulator of lipid metabolism and the autophagy pathway. Our results revealed and characterized a novel sterol transfer protein important for <i>M. oryzae</i> pathogenicity. <b>Abbreviations:</b> AmB: amphotericin B; ATMT: <i>Agrobacterium tumefaciens</i>-mediated transformation; CM: complete medium; dpi: days post-inoculation; ER: endoplasmic reticulum; Flipper-TR: fluorescent lipid tension reporter; GO: Gene ontology; hpi: hours post-inoculation; IH: invasive hyphae; KEGG: kyoto encyclopedia of genes and genomes; MoTor: target of rapamycin in <i>Magnaporthe oryzae</i>; PalmC: palmitoylcarnitine; PM: plasma membrane; SD-N: synthetic defined medium without amino acids and ammonium sulfate; TOR: target of rapamycin; VASt: VAD1 Analog of StAR-related lipid transfer; YFP, yellow fluorescent protein.
DOI: 10.6084/m9.figshare.7460414.v1
title: Additional file 4: of Transcriptome reprogramming during severe dehydration contributes to physiological and metabolic changes in the resurrection plant Haberlea rhodopensis

description: Table S3. Expression of genes that were known as dehydration inducible genes (ELIP, GS, beta-amylase, catalase, LEA etc.). (XLSX 22â kb)
DOI: 10.6084/m9.figshare.12703440
title: Additional file 11 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 11: Supplementary Table S7. Gene annotation of genomic regions with strong selective sweep signals in Xichuan black-bone chickens.
DOI: 10.6084/m9.figshare.12703467
title: Additional file 6 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 6: Supplementary Table S2. Statistical summary for analysis of downloaded chicken sequence data (24 libraries).
DOI: 10.6084/m9.figshare.7460222.v1
title: Additional file 3: of Genome-wide association study discovered favorable single nucleotide polymorphisms and candidate genes associated with ramet number in ramie (Boehmeria nivea L.)

description: Primers and functional description of candidate genes. (XLSX 11â kb)
DOI: 10.6084/m9.figshare.7460510
title: Additional file 4: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S3. DEGs in group 4 of Table 3. (XLSX 255 kb)
DOI: 10.6084/m9.figshare.7460510.v1
title: Additional file 4: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S3. DEGs in group 4 of Table 3. (XLSX 255 kb)
DOI: 10.6084/m9.figshare.7460519
title: Additional file 5: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S4. DEGs between A/J and C57BL/6 during SS2 infection. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.12703473
title: Additional file 8 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 8: Supplementary Table S4. Statistical summary of sequencing data obtained for 5 XBC libraries by Illumina deep sequencing.
DOI: 10.6084/m9.figshare.23706967
title: Additional file 2 of DNMT3A mutation promotes leukemia development through NAM-NAD metabolic reprogramming

description: Additional file 2: Table S2. The mRNA expression level of NAMPT in AML obtained from the Oncomine database.
DOI: 10.6084/m9.figshare.12703446
title: Additional file 13 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 13: Supplementary Table S9. Coding potential of TCONS_00054154.
DOI: 10.6084/m9.figshare.7460258
title: Additional file 8: of Genome-wide association study discovered favorable single nucleotide polymorphisms and candidate genes associated with ramet number in ramie (Boehmeria nivea L.)

description: Additional SNP loci near the Marker20170â 64. (XLSX 10â kb)
DOI: 10.6084/m9.figshare.12703446.v1
title: Additional file 13 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 13: Supplementary Table S9. Coding potential of TCONS_00054154.
DOI: 10.6084/m9.figshare.12703464
title: Additional file 5 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 5: Supplementary Table S1. Data sources for chickens used in this study.
DOI: 10.6084/m9.figshare.12703464.v1
title: Additional file 5 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 5: Supplementary Table S1. Data sources for chickens used in this study.
DOI: 10.6084/m9.figshare.23706997
title: Additional file 2 of Potential prognostic and therapeutic value of ANXA8 in renal cell carcinoma: based on the comprehensive analysis of annexins family

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.23707000.v1
title: Additional file 3 of Potential prognostic and therapeutic value of ANXA8 in renal cell carcinoma: based on the comprehensive analysis of annexins family

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23707003
title: Additional file 4 of Potential prognostic and therapeutic value of ANXA8 in renal cell carcinoma: based on the comprehensive analysis of annexins family

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.19518954.v1
title: Phenotypic and transcriptomic characterization of an ABA-sensitive mutant generated by microspore embryogenesis in barley

description: Barley (<i>Hordeum vulgare</i> L.) has been recognized as an ideal model plant to study the mechanism of environmental adaptation for crop improvement owing to its wide adaption to abiotic stresses. Abscisic acid is an essential hormone involved in many abiotic stresses. Here, an ABA-sensitive barley mutant (<i>abas1</i>) was generated by microspore embryogenesis. On exogenous ABA treatment, the seedlings of <i>abas1</i> presented less plant height, root length, shoot and root dry matter than the wild type, and more genes showedigher expressional intensity and up-regulation models by RNA-Seq profiling. The gene ontology analysis revealed that the regulation of DEGs may lead to the activation of the ROS pathway and consumption of more energy in <i>abas1,</i> specifically. Furthermore, the up-regulation of two candidate genes (<i>P450</i> and <i>NsLTP</i>) in <i>abas1</i> may contribute to the variation of ABA sensitivity. Our findings provide more valuable material and information toward the understanding of the mechanism of ABA response in barley.
DOI: 10.6084/m9.figshare.12179280
title: Study on the monomer reactivity ratio and performance of EPEG-AA (ethylene-glycol monovinyl polyethylene glycol–acrylic acid) copolymerization system

description: EPEG (ethylene-glycol monovinyl polyethylene glycol)-AA (acrylic acid) copolymerization is a typical representative of free radical copolymerization for the preparation of PCs that has been discussed and used increasingly in recent years. The calculation of the reactivity ratio can be used for the analysis of the monomers reactivity, which is of great significance to the study of copolymerization process. In this paper, combined with GPC test results, the monomer reactivity ratios in EPEG-AA copolymerization were calculated with the linear (Fineman–Ross, YBR, Kelen–Tüdös) methods and the nonlinear least square method, and the uncertainty of the methods were calculated. In addition, it has been found that compared with the widely used IPEG (isobutylene polyethylene glycol)-AA copolymerization, the monomer activity of EPEG is higher and closer with AA, so the copolymerization efficiency should be higher. This problem has been verified by experimental results, and the unity of theory and experiment has been realized. At the same time, the experimental results show that the PCs prepared by EPEG macromonomers have better dispersion of cement paste. To sum up, EPEG macromonomer will be more widely used in the future.
DOI: 10.6084/m9.figshare.19518962.v1
title: Transcriptomic insights into the regulatory networks of chilling-induced early flower in tobacco (<i>Nicotiana tabacum</i> L.)

description: Appropriate timing of flowering is pivotal for tobacco, while chilling stress occurring at the seedling stage often undesirably leads to early flowering. However, the potential mechanism underlying chilling-induced early flowering remains unknown. Here, transcriptome sequencing was performed in tobacco with or without chilling at both seedling and budding stages. Chilling affected the expression of numerous genes at the seedling stage, while these dramatic expression changes were largely eliminated at the budding stage. A small number of genes related to metabolism, flower development, and stress tolerance continued to keep their altered expression patterns from the seedling stage to the budding stage. Many potential flowering-related genes involved in flowering pathways were identified and over half of them were differentially expressed. Functional analysis revealed that the down-regulation of <i>NbXTH22</i> rendered tobacco less sensitive to chilling-induced early flowering. These results provide valuable resources for the investigation of flowering regulatory mechanisms and contribute to the genetic improvement of crops.
DOI: 10.6084/m9.figshare.7460519.v1
title: Additional file 5: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S4. DEGs between A/J and C57BL/6 during SS2 infection. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.12703598
title: Additional file 7 of Trem2 deficiency differentially affects phenotype and transcriptome of human APOE3 and APOE4 mice

description: Additional file 7: Supplemental Table 1. WGCNA.
DOI: 10.6084/m9.figshare.14276106
title: Improving seed germination and seedling growth of guava under heat and osmotic stresses by chemical and hormonal seed treatments

description: ABSTRACT This study, consisting of two independent experiments, was conducted to optimize presowing guava seed treatments and evaluate the optimized treatments in improving germination and seedling growth of guava under heat and osmotic stresses. In the first experiment, seeds of guava cultivar White Flesh Local I were soaked in water, gibberellic acid (GA3) (0.05 and 0.1%), hydrochloric acid (HCl) (5 and 10%) and sulfuric acid (H2SO4) (5 and 10%) for 24 and 48 h (for water and GA3), and 2 and 5 min (for HCl and H2SO4). Seed soaking (priming) with GA3 (0.1%, at 48 h) and HCl (10%, 2 min) were the most effective treatments to improve seed germination and early seed growth of guava and were used in the second experiment. In the second experiment, treated and untreated seeds were sown in plastic boxes between two layers of filter papers maintained at osmotic potentials of 0, -1.5 and -3 MPa. The germination boxes were incubated at optimal (25 °C) and higher (32 °C) temperatures. Germination was significantly suppressed at a higher temperature and with an increase in the osmotic potential. However, seed treatments with GA3 and HCl were effective to improve the germination and seedling growth of guava under both temperature and osmotic stresses. In conclusion, chemical and hormonal seed treatments may help improve the seed germination and seedling growth of guava under heat and osmotic stresses by modulation of antioxidant enzymes and leaf proline. Seed treatment with GA3 (0.1%, 48 h) was the most effective in this regard.
DOI: 10.6084/m9.figshare.7460531.v1
title: Additional file 7: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S6. Details of GO over-representation. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7460498.v1
title: Additional file 2: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S1. Details of significant SNPs related to SS2 susceptibility. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.23707000
title: Additional file 3 of Potential prognostic and therapeutic value of ANXA8 in renal cell carcinoma: based on the comprehensive analysis of annexins family

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.23707075.v1
title: Additional file 2 of Neural network-based prognostic predictive tool for gastric cardiac cancer: the worldwide retrospective study

description: Additional file 2: Supplement File 1. The Neural network-based prognostic predictive tool for GCC patients.
DOI: 10.6084/m9.figshare.12703473.v1
title: Additional file 8 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 8: Supplementary Table S4. Statistical summary of sequencing data obtained for 5 XBC libraries by Illumina deep sequencing.
DOI: 10.6084/m9.figshare.7460501.v1
title: Additional file 3: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S2. Duplicated DEGs among groups 1, 2 and 3 of Table 3. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.12703440.v1
title: Additional file 11 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 11: Supplementary Table S7. Gene annotation of genomic regions with strong selective sweep signals in Xichuan black-bone chickens.
DOI: 10.6084/m9.figshare.23706901
title: Additional file 2 of Causal association between body mass index and temporomandibular disorders: a bidirectional two-sample Mendelian randomization analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.7460537
title: Additional file 8: of Screening of Streptococcus Suis serotype 2 resistance genes with GWAS and transcriptomic microarray analysis

description: Table S7. SNPs significant to SS2 susceptibility and corresponding DEGs located within their 500â kb high correlation range. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.12703682.v1
title: Additional file 1 of Integrated metabolomic and transcriptomic analysis of the anthocyanin regulatory networks in Salvia miltiorrhiza Bge. flowers

description: Additional file 1 Supplemental Table S1. Sequences of specific primers for qRT-PCR.
DOI: 10.6084/m9.figshare.12703691.v1
title: Additional file 4 of Integrated metabolomic and transcriptomic analysis of the anthocyanin regulatory networks in Salvia miltiorrhiza Bge. flowers

description: Additional file 4 Supplemental Table S4. Differentially expressed genes of anthocyanin biosynthesis in WPSM vs. PFSM.
DOI: 10.6084/m9.figshare.23706841
title: Additional file 1 of Elucidating the effects of organic vs. conventional cropping practice and rhizobia inoculation on rhizosphere microbial diversity and yield of peanut

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.12703682
title: Additional file 1 of Integrated metabolomic and transcriptomic analysis of the anthocyanin regulatory networks in Salvia miltiorrhiza Bge. flowers

description: Additional file 1 Supplemental Table S1. Sequences of specific primers for qRT-PCR.
DOI: 10.6084/m9.figshare.23706841.v1
title: Additional file 1 of Elucidating the effects of organic vs. conventional cropping practice and rhizobia inoculation on rhizosphere microbial diversity and yield of peanut

description: Supplementary Material 1
DOI: 10.5281/zenodo.10478868
title: Raw Data: Optimizing Color Saturation in Colloidal Photonic Crystals by Control of Absorber Amount and Distribution

description: This data publication is based on the metadata and datasets underlying the manuscripts "Optimizing Color Saturation in Colloidal Photonic Crystals by Control of Absorber Amount and Distribution"

1. 'UV-VIS.zip' contains the following data:



Macro-Photography of photonic crystals in PDMS molds (heterogeneous and homogeneous)

UV-VIS spectra of photonic crystals in PDMS molds (heterogeneous and homogeneous)


2. 'Correlative Microscopy.zip' contains the following data:



Light Microscopy (LM) and SEM images of photonic crystals made by vertical convective deposition (heterogeneous and homogeneous), for varied compositions and  5, 7 and 9 layer and meassurement of particle packing density based on these SEM images 

Macro-Photography of photonic crystals made by vertical convective deposition (heterogeneous and homogeneous)

Microscopic Spectra of photonic crystals made by vertical convective deposition (heterogeneous and homogeneous) for 5, 7 and 9 layers 


3. 'Figure SI 2 Zetapotentials.xlsx' contains meassured Zetapotential and error of PS and PS@PDA NPs employed in the assembly

4. 'RGB and chromaticity.zip' contains the following data:



Chromaticity calculated from L*a*b*-values of photonic crystals in PDMS molds (heterogeneous and homogeneous) listed with their corresponding PDA volume ratio/ PDA layer thickness

RGB-values and L*a*b*-values derived from UV-VIS spectra of photonic crystals in PDMS molds (heterogeneous and homogeneous) named after PS particle ratio and layer thickness respectively


5. 'Simulations.zip' contains the following data:



Spectra of photonic crystals simulated by DDA (heterogeneous and homogeneous); raw (unprocessed) and fitted

RGB-values, L*a*b*-values and chromaticity derived from spectra of photonic crystals simulated by DDA (heterogeneous and homogeneous)
DOI: 10.5281/zenodo.10478869
title: Raw Data: Optimizing Color Saturation in Colloidal Photonic Crystals by Control of Absorber Amount and Distribution

description: This data publication is based on the metadata and datasets underlying the manuscripts "Optimizing Color Saturation in Colloidal Photonic Crystals by Control of Absorber Amount and Distribution"

1. 'UV-VIS.zip' contains the following data:



Macro-Photography of photonic crystals in PDMS molds (heterogeneous and homogeneous)

UV-VIS spectra of photonic crystals in PDMS molds (heterogeneous and homogeneous)


2. 'Correlative Microscopy.zip' contains the following data:



Light Microscopy (LM) and SEM images of photonic crystals made by vertical convective deposition (heterogeneous and homogeneous), for varied compositions and  5, 7 and 9 layer and meassurement of particle packing density based on these SEM images 

Macro-Photography of photonic crystals made by vertical convective deposition (heterogeneous and homogeneous)

Microscopic Spectra of photonic crystals made by vertical convective deposition (heterogeneous and homogeneous) for 5, 7 and 9 layers 


3. 'Figure SI 2 Zetapotentials.xlsx' contains meassured Zetapotential and error of PS and PS@PDA NPs employed in the assembly

4. 'RGB and chromaticity.zip' contains the following data:



Chromaticity calculated from L*a*b*-values of photonic crystals in PDMS molds (heterogeneous and homogeneous) listed with their corresponding PDA volume ratio/ PDA layer thickness

RGB-values and L*a*b*-values derived from UV-VIS spectra of photonic crystals in PDMS molds (heterogeneous and homogeneous) named after PS particle ratio and layer thickness respectively


5. 'Simulations.zip' contains the following data:



Spectra of photonic crystals simulated by DDA (heterogeneous and homogeneous); raw (unprocessed) and fitted

RGB-values, L*a*b*-values and chromaticity derived from spectra of photonic crystals simulated by DDA (heterogeneous and homogeneous)
DOI: 10.6084/m9.figshare.12703443
title: Additional file 12 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 12: Supplementary Table S8. Difference in expression for dorsal skin between black skin (BS) and yellow skin (YS) in Xichuan black-bone chickens by RNA-Seq.
DOI: 10.6084/m9.figshare.12703443.v1
title: Additional file 12 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 12: Supplementary Table S8. Difference in expression for dorsal skin between black skin (BS) and yellow skin (YS) in Xichuan black-bone chickens by RNA-Seq.
DOI: 10.6084/m9.figshare.12703467.v1
title: Additional file 6 of Breeding history and candidate genes responsible for black skin of Xichuan black-bone chicken

description: Additional file 6: Supplementary Table S2. Statistical summary for analysis of downloaded chicken sequence data (24 libraries).
DOI: 10.25549/usctheses-ouc11673101
title: Microsoft Word - Manuelita Maldonado_MSPR Thesis_FINAL 04.14.2020.docx
DOI: 10.24403/jp.1330390
title: Frey, W., Frahm, J.-P., Fischer, E. & Lobin, W.: Die Moos- und Farnpflanzen Europas : Kleine Kryptogamenflora 4, (begründet von H. Gams). - 6. Aufl. - Stuttgart ; Jena ; New York : Gustav Fischer Verlag, 1995 / [rezensiert von] H.-J. Zündorf