cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.06s05/1
title: Life history data

description: File contains: Sheet 1: means of lifespan, metabolic rate, body mass, locomotor activity and fitness, per selection line and sex. Sheet 2: means of lifespan, metabolic rate, body mass, locomotor activity and fitness, per sample (30 beetles). Sheet 3: total data on metabolic rate and locomotor activity for each sample (which was measured 4 times in 75 min cycles).
DOI: 10.5061/dryad.12gh2/1
title: CottusAsper_microsatelliteloci

description: Genepop datafile for 14 microsatellite loci genotyped for Cottus asper in southwestern British Columbia.
DOI: 10.5061/dryad.130pg/1
title: DataDryad

description: this Data includes 4 data types: 1) Text files and an excel file which are the output data (results) of study; 2) R files which are the code of the simulation model that was used (DTU-DADS, Version 0.14); 3) csv files that are the input data for the model, and 4) readme files in 2 word documents describing the content of the output data and the model.
DOI: 10.5061/dryad.1n834/1
title: Perez and Munch_Data_Sustained costs of growth and the trajectory of recovery
DOI: 10.5061/dryad.489c7/1
title: Phenotypic data for NILs

description: Raw data for phenotypic measurements for 18 near-isogenic lines (3 genotypes at 2 QTLs in 2 genetic backgrounds) grown in greenhouse
DOI: 10.5061/dryad.4ps8k/1
title: Jennings et al 2014 associated DATA DRYAD deposit in Tab delimited format

description: This data file consists of the data used for analysis and subsequent display. For each table/figure generated, the spreadsheet indicates the data that were used. The ReadMe file describes the data for each set of columns corresponding to display items in the paper. Read me text is listed for rows and columns when imported into Excel as a comma delimited file.
DOI: 10.5061/dryad.57f48/2
title: Bayesian phylogeny of Aphelocoma from cytochrome b gene

description: This is a phylogeny generated in BEAST of the entire genus Aphelocoma (and outgroups) based on cytochrome b sequences from GenBank and those generated for Western Scrub-Jays for this study.
DOI: 10.5061/dryad.7334t/10
title: CR_mammal_12S

description: Mammalian 12S sequences from the midden located at Cavenagh Range, Western Australia
DOI: 10.5061/dryad.7334t/11
title: TK_mammal_12S

description: Mammalian 12S sequences from the midden located at Truitjes Kraal, South Africa
DOI: 10.5061/dryad.7334t/6
title: CR_mammal_16S

description: Mammalian 16S sequences from the midden located at Cavenagh Range, Western Australia
DOI: 10.5061/dryad.7334t/7
title: TK_mammal_16S

description: Mammalian 16S sequences from the midden located at Truitjes Kraal, South Africa
DOI: 10.5061/dryad.7334t/8
title: YR_mammal_16S

description: Mammalian 16S sequences from the midden located at Young Range, Western Australia
DOI: 10.5061/dryad.7334t/9
title: BR_mammal_12S

description: Mammalian 12S sequences from the midden located at Brockman Ridge, Western Australia
DOI: 10.5061/dryad.73gj4/1
title: MEC-14-0327_Data_and_Scripts.tar

description: Data and scripts to reproduce analyses in the paper Data from: A role for migration-linked genes and genomic islands in divergence of a songbird
DOI: 10.5061/dryad.7n139/3
title: PFT_datasetJEcol_2_ResproutersSeedAdult

description: This file contains data of resprouting species abundance pre and post fire with post fire data coded by adult or seedling.
DOI: 10.5061/dryad.86hf6/1
title: IMa2_datafile

description: IMa2 input file containing ND2 and 8 anonymous markers.
DOI: 10.5061/dryad.8sb5h/10
title: McMorran Figure S8
DOI: 10.5061/dryad.90hc5/2
title: Genetic mapping data

description: Genetic mapping data for the 283 bin mapped SNP markers segregating in a Lolium x Lolium (Perma x Aurora) mapping population.
DOI: 10.5061/dryad.92cr7/1
title: miSFOH2S for plos paper

description: Raw data for blood pressure recordings
DOI: 10.5061/dryad.92cr7/2
title: H2S SFO Data Analysis

description: Data summarizing every recording for current clamp and rheobase analyses
DOI: 10.5061/dryad.95pp7/1
title: NumberOfFliesEmerging

description: Number of adult flies collected (i.e., surviving from egg to adulthood) in different assays.
DOI: 10.5061/dryad.97s1k/1
title: Data from: Low-intensity agricultural landscapes in Transylvania support high butterfly diversity: implications for conservation

description: Species abundance and environmental data from Loos et al. 2014
DOI: 10.5061/dryad.b66rc/1
title: Microsatellite genotype data of Japanese Spanish mackerel

description: GenePop file: at 5 loci for 16 samples (1,654 individualｓ)
DOI: 10.5061/dryad.b66rc/2
title: Japanese Spanish mackerel - Individual sequences

description: Individual sequences in fasta format
DOI: 10.5061/dryad.b66rc/3
title: Japanese Spanish mackerel - Haplotype sequences

description: Sequences for 94 haplotypes
DOI: 10.5061/dryad.c1q38/1
title: Lumibao_F_grandifolia_mirosatellitedata
DOI: 10.5061/dryad.c59q3/1
title: Rams_exp1_1

description: experiment 1: data set for survival analysis. column 1: population type {clonal, diversified}; column 2: antibiotic dose; column 3: population survival {alive, dead}
DOI: 10.5061/dryad.c59q3/3
title: Rams_exp1_3

description: data for final population size (t=53h) in experiment 1 (rescued populations). Column 1: population type {clonal, diversified}; column 2: antibiotic dose; column 3: log10(population size+1).
DOI: 10.5061/dryad.cs0qv/1
title: Bergmann_and_McElroy_individual_data

description: Individual-level dataset used in the publication.
DOI: 10.5061/dryad.cs0qv/2
title: Bergmann_and_McElroy_species_data

description: Species-level data used in the publication
DOI: 10.5061/dryad.cv507/1
title: Debarre-etal_2013_JEB_Codes

description: Zipped folder containing R and Mathematica codes.
DOI: 10.5061/dryad.cv910/3
title: COI Aligned sequences used for the ESU 2 network

description: Aligned sequences of COI used to construct the ESU 2 haplotype network. This file contains samples from the Logatchev vent (CLog), the Lucky Strike vent (C),the Blake Ridge diapir (BlRAlv) and the Cayman Ridge (CayRim)
DOI: 10.5061/dryad.cv910/4
title: 18S Aligned sequences of Alvinocarididae shrimp

description: Aligned sequences of 18S. This file contains samples retrieved from GenBank (indicated by their accession numbers), Alvinocaris markensis from the Logatchev vent (Amrk), the Gulf of Mexico (Amu) and the West African seeps (A); it contains Chorocaris chacei samples from the Logatchev (Clog) and Lucky Strike (C)vent.
DOI: 10.5061/dryad.dj31p/1
title: FIG_SUPP_1_DNA_AA

description: Supplementary Figure 1. RAxML tree estimated with the DNA-AA data set (214 taxa, 7428 sites). Nodal numbers indicate support values (≥ 75%), estimated with the rapid bootstrapping algorithm in RAxML.
DOI: 10.5061/dryad.dj31p/3
title: Supplementary_Table_1

description: Supplementary Table 1. Material examined and GenBank Accession numbers.
DOI: 10.5061/dryad.dj31p/4
title: Supplementary_Table_2

description: Supplementary Table 2. Primers used and optimized PCR conditions.
DOI: 10.5061/dryad.dj31p/5
title: Supplementary_Table_3

description: Supplementary Table 3. Characterization of molecular markers, variation, distribution of present/missing sequences and taxa, and GenBank accession numbers (see also Supplementary Table 1).
DOI: 10.5061/dryad.dj31p/6
title: ALL_TAXA_20_GENES

description: Nexus dataset with the complete alignment (214 taxa and 20 gene fragments; 19461 sites). The alignment file is fully annotated for gene partitions, including the batch command in PAUP* to export individual gene files .
DOI: 10.5061/dryad.dj31p/7
title: SUBSET_18_GENES

description: Nexus alignment file for the subset (37 taxa and 18 gene fragments; 17616 sites; no missing data). The alignment file is fully annotated for gene partitions, including the batch command in PAUP* to export individual gene files.
DOI: 10.5061/dryad.g08c7/6
title: Pi_RADs

description: In this file we present the genetic diversity (pi) as evaluated with the RADtools software for all SNPs and Populations. We provide information on the identity of the SNP, the RAD-tag where it is located and the genomic contig where this tag was mapped.
DOI: 10.5061/dryad.g2b4h/1
title: EVA-2012-178-OA_msat_DATA

description: Raw allele scores for 15 microsatellite loci developed from a species-specific library for Rana draytonii. The data file is formatted for Convert v.1.31 (Glaubitz, JC. 2004. Molecular Ecology Notes 4:309-310). Locus names match those in Table S1 of the electronic supplementary materials (linked to the article on the Evolutionary Applications website). Population identifiers match sampling localities detailed in Figure 1 in the paper. Asterisks denote missing data.
DOI: 10.5061/dryad.g5jj6/6
title: scripts

description: scripts
DOI: 10.5061/dryad.j22k0/2
title: raw data(english)
DOI: 10.5061/dryad.j92fs/1
title: ALL_finches_species

description: Structure File of all Galapagos finches used in microsatellite analyses. Island of origin is noted by a numerical key. 1) Daphne 2) Santa Cruz 3) Santiago 4) Genovesa 5) Rabida 6) Albany 7) Espanola 8) Wolf (Wenman) 9) Pinzon 10) Darwin (Culpepper) 11) Marchena 12) Champion 13) Gardner 14) Floreana 15) Santa Fe 16) San Cristobal 17) Pinta 18) Fernandina 19) Isabela
DOI: 10.5061/dryad.k0080/1
title: TableS1
DOI: 10.5061/dryad.k0080/2
title: Electronic Supplemental Material

description: All ESM except Table S1 (i.e. Table S2, Fig. S1, Fig. S2).
DOI: 10.5061/dryad.k9g50/1
title: Geneland coordinates

description: This is the spatial coordinate file (in UTM format) for Geneland analyses. There is one line per individual and two columns representing the x-axis and y-axis coordinate. Original latitude/longitude coordinates were collected in the field using a hand-held GPS (WGS84 datum) and subsequently converted to UTM format in ArcView.
DOI: 10.5061/dryad.k9g50/12
title: Full data file

description: This is the complete data file.
DOI: 10.5061/dryad.k9g50/14
title: subset point localities

description: This file contains latitude and longitude coordinates for the 23 localities representing a subset of the total data used to construct species distribution models. California records were filtered to one locality record per 10 km2 grid cell, resulting in a total of N=23 records. We performed this analysis to investigate whether the greater number of records in California unduly influenced the model.
DOI: 10.5061/dryad.m0204/1
title: C. palaestinus transcriptome assembly

description: Assembly is based on RNA extracted from leaves, florets, and ovules of PI 235663
DOI: 10.5061/dryad.m466f/15
title: cultivated

description: Samples in the "cultivated" analysis group.
DOI: 10.5061/dryad.m466f/16
title: cutcultivated

description: Individuals in the "cultivated" group with the "cut" trnK allele.
DOI: 10.5061/dryad.m466f/17
title: fruticosus

description: Samples in the "fruticosus" analysis group.
DOI: 10.5061/dryad.n75dt/1
title: Mercer et al PLOS ONE Data for analyses of values from individuals

description: This file has four tabs which provide the data necessary to (1) recreate the analyses on the life stages (emergence and survival to reproduction) as well as (2) provide the basis for the seed production per plant data, which is actually analyzed at the level of the plot (see associated data set).  For this latter purpose, data from the "Seeds per head" tab can be used to recreate the seed estimates per head, which can were then used on the "For estimates of seeds per plt" tab to calculate seeds per plant.  The seeds per plant tab data is the basis for the averages by plot.  Metadata tab and the paper for more information about the variables and analyses.
DOI: 10.5061/dryad.n75dt/2
title: Mercer et al. PLOS ONE Data for analyses of fitness variables

description: This dataset allows you to recreate the analyses of seeds produced per reproductive plant, per emerged seedling, and per planted seed.
DOI: 10.5061/dryad.n75dt/3
title: Mercer et al PLOS ONE Environmental treatments response data

description: This file has three tabs of data that help you recreate the analyses assessing whether our environmental treatments manipulated the biotic environment as expected.
DOI: 10.5061/dryad.qh1pg/1
title: DEAP Validation 1: Pathway Data

description: Representations of the simulated pathways from the section "DEAP Validation 1: Simulated Data on Simulated Pathways" in the *.edg format utilized for input into the DEAP algorithm.
DOI: 10.5061/dryad.qh1pg/2
title: DEAP Validation 1: Expression Data

description: All simulated expression data used for the section "DEAP Validation 1: Simulated Data on Simulated Pathways". Data is in the TSV format used for input into the DEAP algorithm. Simulated data was generated as described in "Methods: Simulated Data". File naming indicates the variables input into the simulation algorithm.
DOI: 10.5061/dryad.qh1pg/4
title: DEAP Validation 2: Expression Data Part 1

description: All simulated expression data used for the section "DEAP Validation 2: Simulated Data on Biological Pathways". Data is in the TSV format used for input into the DEAP algorithm. Simulated data was generated as described in "Methods: Simulated Data". File naming indicates the variables input into the simulation algorithm.
DOI: 10.5061/dryad.r6624/2
title: gene_expression_five_weeks_old_offspring

description: Gene expression measurements of five week old offspring.
DOI: 10.5061/dryad.r8n7c/2
title: Primer sequences

description: Primers, which were used in the study
DOI: 10.5061/dryad.s1v35/2
title: Torres-Dowdall etal. BJLS 2555.R1. Phenotypic data

description: Data used in the analysis of phenotypic variation observed in wild-caught fish of Poecilia reticulata and Poecilia picta (‘Species’ column). Phenotypes measured in males include size and condition index (Kn). Phenotypes measured in females include reproductive allocation, fecundity, mean size of developing embryos, and condition index (Kn). ‘ID’ indicates internal collection number. ‘Sex’ specifies if data was collected from a male or a female. ‘Drainage’ refers to the drainage from where wild fish were collected. ‘Locality’ refers to the place along each drainage from where fish were collected (‘Upstream’ correspond to a freshwater-upstream locality where only P. reticulata occurred, ‘Midstream’ to a freshwater-midstream locality where both species were present, and ‘Downstream’ to a brackish water-downstream locality where only P. picta occurred). Size was measured as standard length of the fish (‘Length’ column, units in millimeters). Adult mass is presented as eviscerated dry mass (‘Mass’ column, units milligrams). ‘Kn’ refers to condition index, which was determined using this formula (Kn= Mi/aLib); where (a) is the intercept and (b) the slope of the least squares regression of log-transformed individual dry mass (Mi) on log-transformed individual standard length (Li). ‘#_Embryos’ was used to determine fecundity, and is a measure the number of developing embryos found in a female at the time of euthanasia. ‘Mean_offspring_mass’ is a measure of the size of each developing embryo at the time of the female’s euthanasia. ‘Reproductive_allocation’ is a measure of the percentage of the mass of a female dedicated to reproduction. ‘Mean_Stage’ is a measure of the developmental stage in which the embryos were at the time of the female’s euthanasia. Missing data or not corresponding data are showed as a dash.
DOI: 10.5061/dryad.s449d/1
title: Maxillaria Fig1to7 tree

description: Treefile from max parsimony analysis of Maxillaria Fig1to7 matrix.
DOI: 10.5061/dryad.15527/1
title: Lothery et al raw data and key

description: The raw data are contained in sheet one. There is a key in the second sheet of the spreadsheet to explain column names.
DOI: 10.5061/dryad.178n3/1
title: Reef ecoregion occupancy data for all scleractinian corals based primarily on the Coral Geographic database (Veron et al. 2009)
DOI: 10.5061/dryad.178n3/2
title: Conservation status of all scleractinian corals based on the IUCN Red List of Threatened Species (Carpenter et al. 2008)
DOI: 10.5061/dryad.1q88j/16
title: Cover_Shrub_Total

description: Plot-level values of total (summed) cover over the study period (1979 to 2008) of all shrub species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are % (values can exceed 100%).
DOI: 10.5061/dryad.1q88j/20
title: Richness_Herb_Colonist

description: Richness over the study period (1979 to 2008) of colonizing herbaceous species (see Appendix A for species classification). Column headings are: Plot number (first digit is watershed number, 1 or 3); the remainining columns are sampling dates (1979, 1980, 1983, 1987, 1990, 1994, 1997, 2002, and 2008. Units are number of species/plot.
DOI: 10.5061/dryad.21sf7/1
title: Morphometric data of a subset of the Thamnophilidae

description: Tab-delimited file containing morphometric data for 362 thamnophilid specimens. Description of measured characters is included in the main text.
DOI: 10.5061/dryad.21sf7/2
title: Relative time-calibrated phylogeny of a subset of the Thamnophilidae

description: Ultrametric phylogeny estimated by Beast v. 1.6.1 (see main text for details) of a subset of the Thamnophilidae, with special focus on the Myrmotherula complex and their close relatives. Phylogeny is given in Newick format and includes only one sample per species.
DOI: 10.5061/dryad.21sf7/3
title: Bayesian phylogeny of a subset of the Thamnohilidae

description: 50 % majority-rule Bayesian phylogeny in Newick format of a subset of the Thamnophilidae produced by MrBayes v. 3.1.2 (Figure S.1). Phylogeny contains all individuals sampled per species.
DOI: 10.5061/dryad.2k55t/1
title: Activity

description: Please see README file for description of all data files.
DOI: 10.5061/dryad.34jb6/6
title: 1980-SingleNote

description: Example of a 1980 single Ch song (.wav format, 16 bit, 44 kHz)
DOI: 10.5061/dryad.34qf8/1
title: Dataset - Lefebvre et al

description: Raw data
DOI: 10.5061/dryad.35h8v/1
title: Dubuis et al. - Data_Fig_2B

description: Source data for Figure 2B: Invagination of the membrane for 8 embryos (delta x), mean (mean delta) and adjusted mean in fixed tissues (mean delta fixed) as function of time during n.c. 14. NaN indicates that furrow canal could not be detected at that particular time.
DOI: 10.5061/dryad.49rd9/1
title: Simulation data

description: The Data folder contains all the individual entries used to plot the figures presented in the study. The folder contains a parameter legend file describing the meaning of each column in the data files.
DOI: 10.5061/dryad.62s00/1
title: input_for_IM_analysis

description: Sequences of all samples used in IM analysis.
DOI: 10.5061/dryad.62v82/1
title: Finiguerra et al., 2014, Ecology and Evolution, Data Sharing

description: This file contains all data used for plotting and statistical analyses.
DOI: 10.5061/dryad.6h3f7/2
title: Dev Timing-ALL(w-M&F)

description: Average development time per vial
DOI: 10.5061/dryad.6h3f7/7
title: Adult fitness (just days 4-6)
DOI: 10.5061/dryad.6p2h0/1
title: MER-13-0064_E-gels

description: This file contains original E-gel images for the manuscript MER-13-00641)	PVA  is labeled as ‘NVI’2)	Fridge storage is labeled as ‘fresh’ in some E-gels3)	E-gels were reused twice4)	Please refer to Table 2 in the manuscript for detailed experiment setup decription
DOI: 10.5061/dryad.6p2h0/3
title: MER-13-0064_calculations

description: Calculations in MS Excel used for generation of graphs in Tableau.
DOI: 10.5061/dryad.74440/1
title: Genotype data

description: Geneotype data from samples collected along the Glenburn transect. Field number - individual, Site number - corresponds with Figure 1, Cline distance - distance along the transect and used in cline analysis, mtDNA - mtDNA identity as determined from RFLP, MS - Le=L. ewingii, Lp=L. paraewingi, Hyb=hybrid as determined from Structure analysis, YrCollected - year sample was collected, Le1-Le8 - genotype data from microsatellite loci.
DOI: 10.5061/dryad.75c77/1
title: Infection Data - Experiment 1 & 2

description: Pupal score data (measure of infection) for pilot experiment and larger repeat.
DOI: 10.5061/dryad.7h66k/1
title: Groussin_COaLA_SuppMat

description: Supplementary Material of "A Branch-Heterogeneous Model of Protein Evolution for Efficient Inference of Ancestral"
DOI: 10.5061/dryad.82d4q/1
title: Spring and autumn bird migration speed, list of cases

description: List of published cases with detailed data about different components of bird migration speed during autumn and spring.
DOI: 10.5061/dryad.8sb5h/3
title: McMorran Figure 3
DOI: 10.5061/dryad.8sb5h/5
title: McMorran Figure S1
DOI: 10.5061/dryad.8sb5h/9
title: McMorran Figure S7
DOI: 10.5061/dryad.9c31c/1
title: Genotypes_shell measurements_Manila clam

description: This .zip includes six files: genotypes and shell measurements in Excel, sequences of mtDNA COI for Figs. 2 and 3, and individual sequences in fast files. Haplotypes for R. philippinarum and R. variegatus in text files.
DOI: 10.5061/dryad.b2387/1
title: Virgilio_et_al_microsat_genotypes

description: Individual multilocus genotypes (as resulting from the analysis of 16 microsatellite markers) of 621 specimens of Ceratitis fasciventris, C. anonae, C. rosa.
DOI: 10.5061/dryad.b2387/2
title: MIGRATE parmfile

description: MIGRATE parmfile
DOI: 10.5061/dryad.bf597/1
title: simulation of pathway evolution
DOI: 10.5061/dryad.c59q3/4
title: Rams_exp2_1

description: data set for analysis of population rescue at end of experiment 2 (t=86hours). Column 1: population type {0.2ml, 1.5ml volume}; column 2: population rescue {alive, dead}; column 3: antibiotic dose.
DOI: 10.5061/dryad.c59q3/5
title: Rams_exp2_2

description: data set for time series analysis of population size during experiment 2. Column 1: population type {0.2ml, 1.5ml volume}; column 2: population rescue {alive, dead after 86h}; column 3: antibiotic dose; column 4: population identity; column 5: time {hours}; column 6: log10(population size+1)
DOI: 10.5061/dryad.c59q3/6
title: RAms_exp2_3

description: data set for analysis of correlation between change in log population size (t48 minus t24) and frequency of antibiotic-resistant type in the population. Column 1: antibiotic dose; column 2: change in population size; column 3: frequency of resistant type.
DOI: 10.5061/dryad.c59q3/7
title: Rams_exp2_4

description: data file for analysis of final (t=86h) population size in rescued (1.5ml volume) populations and frequency of antibiotic resistant types in these populations. Column 1: antibiotic dose; column 2: frequency of resistant type; column 3: log10(population size+1).
DOI: 10.5061/dryad.cv910/5
title: Alvinocaris microsatellite genotypic data in genetix format

description: Genotypic data obtained for Alvinocaris samples from the Gulf of Mexico, Logatchev vent and West Africa seeps. The file is in GENETIX format, where the different microsatelite loci are listed in the beggining of the file, together with the number of alleles found and their fragment sizes. This is followed by the genotype found for each individual in each population, each column corresponds to the genotype at a specific locus (in the order presented on the first part of the file)
DOI: 10.5061/dryad.d2990/2
title: Supplement_TableS1

description: File containing the information extracted from the phylogenies in a table (comma delimited format).
DOI: 10.5061/dryad.h4070/2
title: Saxifragales.R8s.tre

description: "Saxifragales.R8s.tre" contains the estimated ML tree and 200 ML botstrap trees for the data set.All of the trees in "Saxifragales.R8s.tre" have ultrametric branch lengths corresponding to time (in million years),obtained by penalized likelihood analysis in R8s.
DOI: 10.5061/dryad.j6g1c/1
title: epidemiological, behavioral and MRI data

description: epidemiological, behavioral and MRI data by each subject