DOI: 10.5281/zenodo.13240089
title: EOL Microbes Patch (MIP) - active: EOL Microbes Patch 2023

description: Bacteria, viruses & microbial Eukaryotes to complement NCBI & WoRMS coverage. Hierarchy follows NCBI & Adl et al. 2019.

##References

Adam, Rodney D. 2017. Diplomonadida. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–28. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_1-1.

Adl, S. M., et al. 2019. Revisions to the classification, nomenclature, and diversity of eukaryotes. Journal of Eukaryotic Microbiology 66, 4–119. https://doi.org/10.1111/jeu.12691

Azevedo, Carlos, and P. M. Hine. 2017. Haplosporidia. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–29. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_16-1.

Baldauf, Sandra L., and Joan E. Strassmann. 2017. Dictyostelia. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–45. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_14-1.

Beakes, Gordon W., and Marco Thines. Hyphochytriomycota and Oomycota. 2016. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–71. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_26-1.

Bennett, R. M., D. Honda, G. W. Beakes, and M. Thines. 2017. Labyrinthulomycota. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–36. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_25-1.

Boltovskoy, D., ed., 1999. South Atlantic zooplankton. Backhuys Publishers, Leiden.

Boltovskoy, Demetrio, O. Roger Anderson, and Nancy M. Correa. 2017. Radiolaria and Phaeodaria. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–33. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_19-2.

Brown, Matthew W., Jeffrey D. Silberman, and Frederick W. Spiegel. 2010. A Contemporary Evaluation of the Acrasids (Acrasidae, Heterolobosea, Excavata). European Journal of Protistology 48(2):103–23. https://doi.org/10.1016/j.ejop.2011.10.001

Bulman, Simon, and Sigrid Neuhauser. 2017. Phytomyxea. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–21. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_24-1.

Burki, F., 2014. The Eukaryotic Tree of Life from a Global Phylogenomic Perspective. Cold Spring Harb Perspect Biol 6, a016147. https://doi.org/10.1101/cshperspect.a016147

Burki Fabien, Kaplan Maia, Tikhonenkov Denis V., Zlatogursky Vasily, Minh Bui Quang, Radaykina Liudmila V., Smirnov Alexey, Mylnikov Alexander P., Keeling Patrick J., 2016. Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proceedings of the Royal Society B: Biological Sciences 283, 20152802. https://doi.org/10.1098/rspb.2015.2802

Burreson, Eugene M., and Susan E. Ford. 2004. A Review of Recent Information on the Haplosporidia, with Special Reference to Haplosporidium Nelsoni (MSX Disease). Aquatic Living Resources 17(4):499–517. https://doi.org/10.1051/alr:2004056.

Cali, Ann, James J. Becnel, and Peter M. Takvorian. 2017. Microsporidia. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–60. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_27-1.

Caragnano, A., Foetisch, A., Maneveldt, G.W., Millet, L., Liu, L.-C., Lin, S.-M., Rodondi, G., Payri, C.E., 2018. Revision of Corallinaceae (Corallinales, Rhodophyta): recognizing Dawsoniolithon gen. nov., Parvicellularium gen. nov. and Chamberlainoideae subfam. nov. containing Chamberlainium gen. nov. and Pneophyllum. Journal of Phycology 54, 391–409. https://doi.org/10.1111/jpy.12644

Cavalier-Smith, T., 2016. Higher classification and phylogeny of Euglenozoa. European Journal of Protistology 56, 250–276. https://doi.org/10.1016/j.ejop.2016.09.003

Cavalier-Smith, T., Chao, E.E., 2010. Phylogeny and Evolution of Apusomonadida (Protozoa: Apusozoa): New Genera and Species. Protist 161, 549–576. https://doi.org/10.1016/j.protis.2010.04.002

Cavalier-Smith, T., Chao, E.E., Lewis, R., 2018. Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria. Protoplasma 255, 1517–1574. https://doi.org/10.1007/s00709-018-1241-1

Cavalier-Smith, T., Chao, E.E.-Y., 2006. Phylogeny and megasystematics of phagotrophic heterokonts (kingdom Chromista). J. Mol. Evol. 62, 388–420. https://doi.org/10.1007/s00239-004-0353-8

Čepička, Ivan, Michael F. Dolan, and Gillian H. Gile. 2016. Parabasalia. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–44. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_9-1.

Cook, Martha E., and Linda E. Graham. 2016. Chlorokybophyceae, Klebsormidiophyceae, Coleochaetophyceae. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–20. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_36-1.

Díaz-Tapia, P., Pasella, M.M., Verbruggen, H., Maggs, C.A., 2019. Morphological evolution and classification of the red algal order Ceramiales inferred using plastid phylogenomics. Molecular Phylogenetics and Evolution 137, 76–85. https://doi.org/10.1016/j.ympev.2019.04.022

Eikrem, Wenche, Linda K. Medlin, Jorijntje Henderiks, Sebastian Rokitta, Björn Rost, Ian Probert, Jahn Throndsen, and Bente Edvardsen. 2017. Haptophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–61. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_38-2.

Eliáš, Marek, Raquel Amaral, Karen P. Fawley, Marvin W. Fawley, Yvonne Němcová, Jiří Neustupa, Pavel Přibyl, Lilia M. A. Santos, and Tereza Ševčíková. 2017. Eustigmatophyceae. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–39. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_39-1.

Fang, Ling, Frederik Leliaert, Phil M. Novis, Zhenhua Zhang, Huan Zhu, Guoxiang Liu, David Penny, and Bojian Zhong. 2018. Improving Phylogenetic Inference of Core Chlorophyta Using Chloroplast Sequences with Strong Phylogenetic Signals and Heterogeneous Models. Molecular Phylogenetics and Evolution 127:248–55. https://doi.org/10.1016/j.ympev.2018.06.006.

Fang, Ling, Frederik Leliaert, Zhen-Hua Zhang, David Penny, and Bo-Jian Zhong. 2017. Evolution of the Chlorophyta: Insights from Chloroplast Phylogenomic Analyses. Journal of Systematics and Evolution 55(4):322–32. https://doi.org/10.1111/jse.12248.

Frank W. 1984. Non-Hemoparasitic Protozoans. In: Hoff G.L., Frye F.L., Jacobson E.R. (eds) Diseases of Amphibians and Reptiles. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-9391-1_19

Fučíková, Karolina, Paul O. Lewis, Suman Neupane, Kenneth G. Karol, and Louise A. Lewis. 2019. Order, Please! Uncertainty in the Ordinal-Level Classification of Chlorophyceae. PeerJ 7 e6899. https://doi.org/10.7717/peerj.6899.

Gao, F., Warren, A., Zhang, Q., Gong, J., Miao, M., Sun, P., Xu, D., Huang, J., Yi, Z., Song, W., 2016. The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata). Scientific Reports 6, 24874. https://doi.org/10.1038/srep24874

Gast, Rebecca J. 2017. Centrohelida and Other Heliozoan-Like Protists. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–17. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_28-1.

Gibson, Wendy. 2016. Kinetoplastea. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–50. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_7-1.

Gkelis, Spyros, Iordanis Ourailidis, Manthos Panou, and Nikos Pappas. 2016. Cyanobacteria of Greece: An Annotated Checklist. Biodiversity Data Journal 4: e10084. https://doi.org/10.3897/BDJ.4.e10084.

Gomaa, F., Lahr, D.J.G., Todorov, M., Li, J., Lara, E., 2017. A contribution to the phylogeny of agglutinating Arcellinida (Amoebozoa) based on SSU rRNA gene sequences. Eur. J. Protistol. 59, 99–107. https://doi.org/10.1016/j.ejop.2017.03.005

Gomez, F. 2012. A checklist and classification of living dinoflagellates (Dinoflagellata, Alveolata). CICIMAR Oceanides 27:65–140.

Gontcharov, A.A., 2008. Phylogeny and classification of Zygnematophyceae (Streptophyta): current state of affairs. Fottea 8, 87–104. https://doi.org/10.5507/fot.2008.004

Groves, John R., Demír Altiner, and Roberto Rettori. 2003. Origin and Early Evolutionary Radiation of the Order Lagenida (Foraminifera). Journal of Paleontology 77(5): 831–43.

Guiry, M.D. & Guiry, G.M. 2020. AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. https://www.algaebase.org

Hall, John D., and Richard McCourt. 2017. Zygnematophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–29. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_41-2.

Hampl, Vladimir. 2016. Preaxostyla. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–36. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_8-1.

Hauer, T. & Komárek, J. 2020: CyanoDB 2.0 - On-line database of cyanobacterial genera. - World-wide electronic publication, Univ. of South Bohemia & Inst. of Botany AS CR, http://www.cyanodb.cz.

Heiss, Aaron A., Matthew W. Brown, and Alastair G. B. Simpson. 2016. Apusomonadida. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–27. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_15-1.

Hoef-Emden, Kerstin, and John M. Archibald. 2016. Cryptophyta (Cryptomonads). In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–41. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_35-1.

Horiguchi, Takeo. 2016. Raphidophyceae (Raphidophyta). In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–26. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_37-1.

Jeon, Boo Seong, Seung Won Nam, Sunju Kim, Myung Gil Park, Boo Seong Jeon, Seung Won Nam, Sunju Kim, and Myung Gil Park. 2018. Revisiting the Parvilucifera Infectans / P.  Sinerae  (Alveolata, Perkinsozoa) Species Complex, Two Parasitoids of Dinoflagellates. Algae 33(1):1–19. https://doi.org/10.4490/algae.2018.33.3.6.

Karpov, S.A., López-García, P., Mamkaeva, M.A., Klimov, V.I., Vishnyakov, A.E., Tcvetkova, V.S., Moreira, D., 2018. The Chytrid-like Parasites of Algae Amoeboradix gromovi gen. et sp. nov. and Sanchytrium tribonematis Belong to a New Fungal Lineage. Protist 169, 122–140. https://doi.org/10.1016/j.protis.2017.11.002

Karpov, S.A., Vishnyakov, A.E., Moreira, D., López‐García, P., 2019. The Ultrastructure of Sanchytrium tribonematis (Sanchytriaceae, Fungi incertae sedis) Confirms its Close Relationship to Amoeboradix. Journal of Eukaryotic Microbiology 66, 892–898. https://doi.org/10.1111/jeu.12740

Kawai, Hiroshi, and Eric C. Henry. 2016. Phaeophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–38. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_31-1.

Keeling, Patrick J. 2016. Chlorarachniophytes. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–17. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_34-1.

Komárek, J., Kaštovský, J., Mareš, J., & Johansen, J. R.  2014. Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. Preslia, 86(4):295-335.

Kosakyan, A., Gomaa, F., Lara, E., Lahr, D.J.G., 2016. Current and future perspectives on the systematics, taxonomy and nomenclature of testate amoebae. European Journal of Protistology, Special issue on Testate Amoebae – a tribute to Ralf Meisterfeld 55, 105–117. https://doi.org/10.1016/j.ejop.2016.02.001

Kostka, Martin. 2016. Opalinata. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–23. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_4-1.

Kristiansen, Jørgen, and Pavel Škaloud. 2016. Chrysophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–38. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_43-1.

Kulda, Jaroslav, Eva Nohýnková, and Ivan Čepička. 2017. Retortamonadida (with Notes on Carpediemonas-Like Organisms and Caviomonadidae). In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–32. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_3-1.

Lado, C., Eliasson, U., 2017. Chapter 7 - Taxonomy and Systematics: Current Knowledge and Approaches on the Taxonomic Treatment of Myxomycetes, in: Stephenson, S.L., Rojas, C. (Eds.), Myxomycetes. Academic Press, pp. 205–251. https://doi.org/10.1016/B978-0-12-805089-7.00007-X

Leander, Brian S., Gordon Lax, Anna Karnkowska, and Alastair G. B. Simpson. 2017. Euglenida. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–42. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_13-1.

Lemieux, Claude, Antony T. Vincent, Aurélie Labarre, Christian Otis, and Monique Turmel. 2015. Chloroplast Phylogenomic Analysis of Chlorophyte Green Algae Identifies a Novel Lineage Sister to the Sphaeropleales (Chlorophyceae). BMC Evolutionary Biology 15(1): 264. https://doi.org/10.1186/s12862-015-0544-5.

Lester, R. J. G., and P. M. Hine. 2017. Paramyxida. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–18. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_21-1.

Letcher, Peter M., and Martha J. Powell. 2018. A Taxonomic Summary and Revision of Rozella (Cryptomycota). IMA Fungus 9:383–99. https://doi.org/10.5598/imafungus.2018.09.02.09.

Letcher, Peter M., and Martha J. Powell. 2019. A Taxonomic Summary of Aphelidiaceae. IMA Fungus 10(1):4. https://doi.org/10.1186/s43008-019-0005-7.

Lynn, Denis. 2008. The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature. 3rd ed. Springer Netherlands. https://doi.org/10.1007/978-1-4020-8239-9.

Lynn, Denis H. 2016. Ciliophora. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–52. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_23-1.

Maistro, Silvia, Paul Broady, Carlo Andreoli, and Enrico Negrisolo. 2016. Xanthophyceae. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–28. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_30-1.

Mandal, F. B., N. C. Nandi, and A. K. Mandal. 1993. Catalouge of the Protozoans occurring in Reptiles from India. Records of the Zoological Survey of India Occasional Paper 148:1-36.

Mann, David G., Richard M. Crawford, and Frank E. Round. 2016. Bacillariophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–62. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_29-1.

McCourt, Richard M., Kenneth G. Karol, John D. Hall, Michelle T. Casanova, and Michael C. Grant. 2017. Charophyceae (Charales). In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–19. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_40-2.

Meriluoto, J., Spoof L., Codd, G. A., eds. 2017. Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis, First Edition. John Wiley & Sons, Ltd. 

Novozhilov, Y.K., van Hooff, H., Jagers, M., 2014. Trichioides iridescens, a new genus and new species (incertae sedis in Myxomycetes). Mycol Progress 14, 1018. https://doi.org/10.1007/s11557-014-1018-7

Okamoto, Noriko, Ryan M. R. Gawryluk, Javier del Campo, Jürgen F. H. Strassert, Julius Lukeš, Thomas A. Richards, Alexandra Z. Worden, Alyson E. Santoro, and Patrick J. Keeling. 2019. A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. Fam. and a Type Species, Eupelagonema Oceanica n. Gen. & Sp. Journal of Eukaryotic Microbiology 66(3):519–24. https://doi.org/10.1111/jeu.12679.

Pánek, Tomáš, Alastair G. B. Simpson, Matthew W. Brown, and Betsey Dexter Dyer. 2017. Heterolobosea. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–42. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_10-1.

Parke, M. & Dixon, P. S. 1976. Check-list of British marine algae - third revision. Journal of the Marine Biological Association of the United Kingdom 56:527-594.

Powell, Martha J. 2016. Blastocladiomycota. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–25. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_17-1.

Powell, Martha J. 2016. Chytridiomycota. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–36. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_18-1.

Price, Dana C., Jürgen M. Steiner, Hwan Su Yoon, Debashish Bhattacharya, and Wolfgang Löffelhardt. 2017. Glaucophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–65. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_42-1.

Richter, Daniel J., and Frank Nitsche. 2016. Choanoflagellatea. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–19. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_5-1.

Roger Anderson, O. 2017. Amoebozoan Lobose Amoebae (Tubulinea, Flabellinea, and Others). In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–31. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_2-1.

Ronikier, A., Halamski, A.T., 2018. Is Myxomycetes (Amoebozoa) a Truly Ambiregnal Group? A Major Issue in Protist Nomenclature. Protist 169, 484–493. https://doi.org/10.1016/j.protis.2018.05.002

Rees, T. (compiler) (2020). The Interim Register of Marine and Nonmarine Genera. Available from http://www.irmng.org at VLIZ.

Roskov Y., et al. eds., 2019. Species 2000 & ITIS Catalogue of Life, 2019 Annual Checklist. Digital resource at http://www.catalogueoflife.org/col. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.

Ruhfel, B.R., Gitzendanner, M.A., Soltis, P.S., Soltis, D.E., Burleigh, J.G., 2014. From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evolutionary Biology 14, 23. https://doi.org/10.1186/1471-2148-14-23

Sahoo, D. & Kumar, S. 2015. Xanthophyceae, Euglenophyceae and Dinophyceae. In The Algae World, Cellular Origin, Life in Extreme Habitats and Astrobiology, 259–305. https://doi.org/10.1007/978-94-017-7321-8_9 

Saldarriaga, J. F., and F. J. R. Taylor. 2017. Dinoflagellata. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–54. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_22-1.

Sheikh, S., Thulin, M., Cavender, J.C., Escalante, R., Kawakami, S., Lado, C., Landolt, J.C., Nanjundiah, V., Queller, D.C., Strassmann, J.E., Spiegel, F.W., Stephenson, S.L., Vadell, E.M., Baldauf, S.L., 2018. A New Classification of the Dictyostelids. Protist 169, 1–28. https://doi.org/10.1016/j.protis.2017.11.001

Siemensma, F. J., Microworld - world of amoeboid organisms. World-wide electronic publication, Kortenhoef, the Netherlands. https://www.arcella.nl/ 

Simpson, Alastair G. B. 2016. Jakobida. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–32. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_6-1.

Simpson, Alastair G. B., Claudio H. Slamovits, and John M. Archibald. 2017. Protist Diversity and Eukaryote Phylogeny. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–21. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_45-1.

Spiegel, Frederick W., Lora L. Shadwick, George G. Ndiritu, Matthew W. Brown, Maria Aguilar, and John D. Shadwick. 2017. Protosteloid Amoebae (Protosteliida, Protosporangiida, Cavosteliida, Schizoplasmodiida, Fractoviteliida, and Sporocarpic Members of Vannellida, Centramoebida, and Pellitida). In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–38. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_12-1.

Stephenson, Steven L., and Martin Schnittler. 2017. Myxomycetes. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–27. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_44-1.

Tashyreva, Daria, Galina Prokopchuk, Akinori Yabuki, Binnypreet Kaur, Drahomíra Faktorová, Jan Votýpka, Chiho Kusaka, et al. 2018. Phylogeny and Morphology of New Diplonemids from Japan. Protist 169(2):158–79. https://doi.org/10.1016/j.protis.2018.02.001.

Tendal, Ole, and Robert Hessler. 1977. An Introduction to the Biology and Systematics of Komokiacea. Galathea Report 14:165-194.

Vachard, Daniel. 2018. Permian Smaller Foraminifers: Taxonomy, Biostratigraphy and Biogeography. Geological Society, London, Special Publications 450(1): 205–52. https://doi.org/10.1144/SP450.1.

Votýpka, Jan, David Modrý, Miroslav Oborník, Jan Šlapeta, and Julius Lukeš. 2017. Apicomplexa. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–58. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_20-1.

Walker, Giselle, Eliška Zadrobílková, and Ivan Čepička. 2017. Archamoebae. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–55. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_11-1.

Wallace, F.G., 1966. The trypanosomatid parasites of insects and arachnids. Experimental Parasitology 18, 124–193. https://doi.org/10.1016/0014-4894(66)90015-4

Witkowski, Jakub, Patricia A. Sims, Nina I. Strelnikova, and David M. Williams. 2015. Entogoniopsis Gen. Nov. and Trilamina Gen. Nov. (Bacillariophyta): A Survey of Multipolar Pseudocellate Diatoms with Internal Costae, Including Comments on the Genus Sheshukovia Gleser. Phytotaxa 209(1): 1. https://doi.org/10.11646/phytotaxa.209.1.1.

WoRMS Editorial Board (2020). World Register of Marine Species. Available from http://www.marinespecies.org at VLIZ. https://doi.org/10.14284/170

Yoon, Hwan Su, Wendy Nelson, Sandra C. Lindstrom, Sung Min Boo, Curt Pueschel, Huan Qiu, and Debashish Bhattacharya. 2016. Rhodophyta. In Handbook of the Protists, edited by John M. Archibald, Alastair G.B. Simpson, Claudio H. Slamovits, Lynn Margulis, Michael Melkonian, David J. Chapman, and John O. Corliss, 1–45. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-32669-6_33-1.
description: The Encyclopedia of Life (EOL, eol.org) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented (Patterson et al., 2016). Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. 

To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy ([see current version here](https://opendata.eol.org/dataset/tram-807-808-809-810-dh-v1-1/resource/00adb47b-57ed-4f6b-8f66-83bfdb5120e8)) using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions.

For more information about the EOL taxonomy, see [EOL Dynamic Hierarchy](https://eol.org/docs/eol-dynamic-hierarchy)