cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.chwm8z
title: Occurrence Download

description: A dataset containing 938 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratocarpus arenarius L."
 ]
}

 The dataset includes 938 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038010-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yd76y
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Pristimantis glandulosus (Boulenger, 1880))"
 ]
}

 The dataset includes 225 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066135-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a0mtor
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vicia glauca subsp. giennense (Cuatrec.) Blanca & F.Valle"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010061-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8236p
title: Occurrence Download

description: A dataset containing 1616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((6.525 52.425,6.575 52.425,6.575 52.475,6.525 52.475,6.525 52.425))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1616 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307671-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grwfwn
title: Occurrence Download

description: A dataset containing 26789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sula leucogaster (Boddaert, 1783)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26789 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010061-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16592937.v1
title: Overexpression of the maize <i>WRKY114</i> gene in transgenic rice reduce plant height by regulating the biosynthesis of GA

description: WRKYs represent an important family of transcription factors that are widely involved in plant development, defense regulation and stress response. Transgenic rice that constitutively expressed <i>ZmWRKY114</i> had shorter plant height and showed less sensitivity to gibberellic acid (GA<sub>3</sub>). Further investigation proved that transgenic rice accumulated lower levels of bioactive GAs than that in wild-type plants. Application of exogenous GA<sub>3</sub> fully rescued the semi-dwarf phenotype of <i>ZmWRKY114</i> transgenic plants. Transcriptome and qRT-PCR analyses indicated that the expression of <i>OsGA2ox4</i>, encoding the repressor of GA biosynthesis, was markedly increased. Electrophoretic mobility shift assay and dual-luciferase reporter assay indicated that ZmWRKY114 directly binds to a W-box motif in the <i>OsGA2ox4</i> promoter. Taken together, these results confirm that <i>ZmWRKY114</i> is a GA-responsive gene and is participated in the regulation of plant height in rice.
DOI: 10.6084/m9.figshare.16592937.v2
title: Overexpression of the maize <i>WRKY114</i> gene in transgenic rice reduce plant height by regulating the biosynthesis of GA

description: WRKYs represent an important family of transcription factors that are widely involved in plant development, defense regulation and stress response. Transgenic rice that constitutively expressed <i>ZmWRKY114</i> had shorter plant height and showed less sensitivity to gibberellic acid (GA<sub>3</sub>). Further investigation proved that transgenic rice accumulated lower levels of bioactive GAs than that in wild-type plants. Application of exogenous GA<sub>3</sub> fully rescued the semi-dwarf phenotype of <i>ZmWRKY114</i> transgenic plants. Transcriptome and qRT-PCR analyses indicated that the expression of <i>OsGA2ox4</i>, encoding the repressor of GA biosynthesis, was markedly increased. Electrophoretic mobility shift assay and dual-luciferase reporter assay indicated that ZmWRKY114 directly binds to a W-box motif in the <i>OsGA2ox4</i> promoter. Taken together, these results confirm that <i>ZmWRKY114</i> is a GA-responsive gene and is participated in the regulation of plant height in rice.
DOI: 10.6084/m9.figshare.7155707.v1
title: Additional file 1: of Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments

description: Table S1. The general information of PPR genes in rice genome. Table S2. PPR genes subcellular location results in rice by TargetP and Predotar. Table S3. PPR genes as miRNA targets in rice. Table S4. FPKM values of PPR genes in rice various organs and tissues. Table S5. RNA-seq data of PPR genes under different biotic and abiotic stresses. Table S6. Primers used in the study. (ZIP 805 kb)
DOI: 10.6084/m9.figshare.7155710.v1
title: Additional file 2: of Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments

description: Figure S1. Structures of PPR proteins and consensus sequence of PPR motif in rice. (A) Typical structures of PPR proteins in rice. The number of motifs in each protein can vary from 2 to 28 in rice. (B) The consensus sequence of 10 PPR motif in rice. The overall height of each stack indicates the conservation of the sequence at that position and the bit score indicates the relative frequency of the corresponding acid. The lengths of the motifs can be estimated using the scale at the bottom. Figure S2. Distribution of PPR genes in rice chromosomes. The 491 PPR genes are widely and unevenly distributed on all 12 chromosomes of rice. Figure S3. Exon/intron structures of the PPR genes in rice. Yellow boxes represent exons, and black lines represent introns. Upstream or downstream regions are indicated by blue boxes. The sizes of exons and introns can be estimated using the scale at the bottom. Figure S4. Phylogenetic relationship of the PLS subgroup genes in rice and other species. Evolutionary relationships of PLS subgroup genes from rice, Arabidopsis, moss, tomato, and foxtail millet. The genes whose IDs start with LOC represent rice gene, AT represents Arabidopsis, Pp represents moss, Solyc represents tomato, and Seita represents foxtail millet. Figure S5. Expression patterns of PPR genes in different rice tissues. The FPKM expression values from RGAP of PPR genes at various developmental stages were log2 transformed, and a heat map was generated using the MeV4.9 software. Samples are indicated at the top of each lane: shoots, leaves-20Â days, pre/post-emergence inflorescence (pre-EI, post-EI), anther, pistil, seed-5 DAP, seed-10 DAP, embryo- 25 DAP and endosperm- 25 DAP. The color scale (representing average log2 signal values) is shown at the top. (ZIP 6622 kb)
DOI: 10.6084/m9.figshare.16592939.v1
title: The XVP/ NAC003 protein associates with the plasma membrane through KR rich regions and translocates to the nucleus by changing phosphorylation status

description: Membrane localized transcription factors play essential roles in various plant developmental processes. The XVP/NAC003 protein is a NAC domain transcription factor associated with the plasma membrane and involved in the TDIF-PXY signaling during vascular development. We report here the mechanisms of XVP membrane localization and its nuclear translocation. Using a transient transformation approach, we found that XVP is associated with the plasma membrane through positively charged KR-rich regions. Mutagenesis studies found that the threonine amino acid at position 354 (T354) is critical for XVP translocation to the nucleus. In particular, the threonine to alanine mutation (T354A) resulted in a partial nucleus localization, while threonine to aspartic acid (T354D) mutation showed no effect on protein localization, indicating that dephosphorylation at T354 may serve as a nucleus translocation signal. This research sheds new light on the nucleus partitioning of plasma membrane-associated transcription factors.
DOI: 10.6084/m9.figshare.22360273
title: Item meanings from Majestic tigers: personality structure in the great Amur cat

description: Description of questionnaire items
DOI: 10.6084/m9.figshare.22360273.v1
title: Item meanings from Majestic tigers: personality structure in the great Amur cat

description: Description of questionnaire items
DOI: 10.6084/m9.figshare.22360276.v1
title: PCA 1 with raters from Majestic tigers: personality structure in the great Amur cat

description: PCA sample 1 with raters left in
DOI: 10.6084/m9.figshare.19738612.v1
title: Additional file 4 of Identification of miRNA-mRNA-TF regulatory networks in peripheral blood mononuclear cells of type 1 diabetes

description: Additional file 4.
DOI: 10.6084/m9.figshare.12923226.v1
title: Additional file 1 of Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

description: Additional file 1: Table S1. The wood properties of different clones of C. bungei.
DOI: 10.6084/m9.figshare.22360279
title: Procrustes rotation with raters 2 from Majestic tigers: personality structure in the great Amur cat

description: Two-factor solution Procrustes rotation with raters left in
DOI: 10.6084/m9.figshare.22360285
title: Raters removed sample 2 from Majestic tigers: personality structure in the great Amur cat

description: Sample 2 with raters removed
DOI: 10.6084/m9.figshare.22360285.v1
title: Raters removed sample 2 from Majestic tigers: personality structure in the great Amur cat

description: Sample 2 with raters removed
DOI: 10.6084/m9.figshare.12923232.v1
title: Additional file 3 of Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

description: Additional file 3: Table S3 The annotation of DEGs involved hormone biosynthesis and signal transduction.
DOI: 10.6084/m9.figshare.22360294
title: ICC sample 1 from Majestic tigers: personality structure in the great Amur cat

description: Intraclass correlation sample 1
DOI: 10.6084/m9.figshare.22360294.v1
title: ICC sample 1 from Majestic tigers: personality structure in the great Amur cat

description: Intraclass correlation sample 1
DOI: 10.6084/m9.figshare.12399020
title: Additional file 4 of Co-occurrence pattern and function prediction of bacterial community in Karst cave

description: Additional file 4: Table S3. List of the encoding genes and enzymes involved in nitrogen metabolism.
DOI: 10.6084/m9.figshare.8207066.v1
title: Additional file 1: of Feeding difficulty is the dominant feature in 12 Chinese newborns with CHD7 pathogenic variants

description: Table S1. Filtered variations of 12 patients. (XLS 552 kb)
DOI: 10.6084/m9.figshare.8207087
title: Additional file 10: of Comparative transcriptomic analysis reveals genetic divergence and domestication genes in Diospyros

description: Table S6. Summary of the EST-SSRs identified from the orthogroups in the nine Diospyros samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8207096.v1
title: Additional file 11: of Comparative transcriptomic analysis reveals genetic divergence and domestication genes in Diospyros

description: Table S7. Characteristics of the 120 conserved microsatellites primers based on orthologs in the DK species. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.15020387.v1
title: Additional file 10 of Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19

description: Additional file 10: Table S9. Imputed gene associations from COVID-19 GWAS.
DOI: 10.6084/m9.figshare.22360300
title: Raters removed sample 1 from Majestic tigers: personality structure in the great Amur cat

description: Sample 1 with raters removed
DOI: 10.6084/m9.figshare.22360279.v1
title: Procrustes rotation with raters 2 from Majestic tigers: personality structure in the great Amur cat

description: Two-factor solution Procrustes rotation with raters left in
DOI: 10.6084/m9.figshare.22360282
title: ICC sample 2 from Majestic tigers: personality structure in the great Amur cat

description: Intraclass correlations sample 2
DOI: 10.6084/m9.figshare.24460054
title: EIF4A3-regulated hsa_circ_0001445 can inhibit the progression of laryngeal squamous cell carcinoma via hsa-miR-432-5p-dependent up-regulation of RGMA expression

description: Laryngeal squamous cell carcinoma (LSCC) is a common malignant tumor in the head and neck, the 5-year relative survival rate of patients diagnosed with laryngeal cancer was estimated to be 61% from 2012 to 2018. An increasing number of studies have shown that circular RNAs (circRNAs) play a key role in the occurrence and development of cancer and may function as cancer biomarkers and new therapeutic targets. At present, the research on the relationship between circRNAs and LSCC is still in its infancy and needs further exploration. In this study, we found a circRNA (hsa_circ_0001445) associated with LSCC based on bioinformatics analysis. Quantitative real-time polymerase chain reaction (qRT-PCR) assay indicated that the expression of hsa_circ_0001445 was down-regulated in LSCC tissues and cell lines. Notably, the expression of hsa_circ_0001445 was negatively correlated with aggressive clinicopathological features and poor prognosis. Then, functional experiments found that overexpression of hsa_circ_0001445 inhibited the proliferation, migration and invasion of LSCC cells and tumor growth in vivo. Mechanistically, RNA immunoprecipitation (RIP), biotin-labeled probe pull-down, luciferase reporter assay and western blot experiments were employed and found that EIF4A3 reduced the expression of hsa_circ_0001445, and the direct binding of hsa_circ_0001445 to hsa-miR-432-5p attenuated the inhibitory effect of hsa-miR-432-5p on RGMA. In summary, our research suggests that hsa_circ_0001445 may be used as a potential prognostic biomarker and therapeutic target for LSCC.
DOI: 10.6084/m9.figshare.22360282.v1
title: ICC sample 2 from Majestic tigers: personality structure in the great Amur cat

description: Intraclass correlations sample 2
DOI: 10.6084/m9.figshare.24460054.v1
title: EIF4A3-regulated hsa_circ_0001445 can inhibit the progression of laryngeal squamous cell carcinoma via hsa-miR-432-5p-dependent up-regulation of RGMA expression

description: Laryngeal squamous cell carcinoma (LSCC) is a common malignant tumor in the head and neck, the 5-year relative survival rate of patients diagnosed with laryngeal cancer was estimated to be 61% from 2012 to 2018. An increasing number of studies have shown that circular RNAs (circRNAs) play a key role in the occurrence and development of cancer and may function as cancer biomarkers and new therapeutic targets. At present, the research on the relationship between circRNAs and LSCC is still in its infancy and needs further exploration. In this study, we found a circRNA (hsa_circ_0001445) associated with LSCC based on bioinformatics analysis. Quantitative real-time polymerase chain reaction (qRT-PCR) assay indicated that the expression of hsa_circ_0001445 was down-regulated in LSCC tissues and cell lines. Notably, the expression of hsa_circ_0001445 was negatively correlated with aggressive clinicopathological features and poor prognosis. Then, functional experiments found that overexpression of hsa_circ_0001445 inhibited the proliferation, migration and invasion of LSCC cells and tumor growth in vivo. Mechanistically, RNA immunoprecipitation (RIP), biotin-labeled probe pull-down, luciferase reporter assay and western blot experiments were employed and found that EIF4A3 reduced the expression of hsa_circ_0001445, and the direct binding of hsa_circ_0001445 to hsa-miR-432-5p attenuated the inhibitory effect of hsa-miR-432-5p on RGMA. In summary, our research suggests that hsa_circ_0001445 may be used as a potential prognostic biomarker and therapeutic target for LSCC.
DOI: 10.6084/m9.figshare.12923229
title: Additional file 2 of Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

description: Additional file 2: Table S2 Number of different types of lncRNAs.
DOI: 10.6084/m9.figshare.22360270.v1
title: Procrustes with raters removed 1 from Majestic tigers: personality structure in the great Amur cat

description: Two-factor solution Procrustes rotation with Raters removed sample 1
DOI: 10.6084/m9.figshare.22360300.v1
title: Raters removed sample 1 from Majestic tigers: personality structure in the great Amur cat

description: Sample 1 with raters removed
DOI: 10.6084/m9.figshare.12923244
title: Additional file 6 of Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

description: Additional file 6: Table S7 The annotation of genes regulated by lncRNAs and transcription factors in the regulatory network. Table S8 The correlations between the expression of genes and regulators.
DOI: 10.6084/m9.figshare.22360306
title: Procrustes main file from Majestic tigers: personality structure in the great Amur cat

description: We explore individual differences in tiger personality. We first asked—is there evidence of personality dimensions (analogous to the Big Five in human personality research) in the Amur tiger? We then asked, are any discoverable personality dimensions associated with measured outcomes, including group status, health, and mating frequency? 152 of our participating tigers live in the world's largest semi-wild tiger sanctuary in North Eastern China. Our second sample of 96 tigers also lives in a sanctuary. Having two samples allowed us to assess the replicability of the personality dimensions or factors reported in our first sample. We found that two factors (explaining 21% and 17% of the variance among items) which we call, for descriptive ease, Majesty and Steadiness, provide the best fit to the data. Tigers that score higher on Majesty are healthier, eat more live prey, have higher group status (among other tigers as assessed by human raters), and mate more often. We provide some ethological context to put flesh on the quantitative bones of our findings concerning these magnificent and charismatic animals.
DOI: 10.6084/m9.figshare.12923249.v1
title: Additional file 15 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 15: Table S14. Pairwise correlation coefficients between different expressed GmGRAS genes during dehydration stress.
DOI: 10.6084/m9.figshare.22360288.v1
title: Raters in or out from Majestic tigers: personality structure in the great Amur cat

description: Comparing raters left in versus removed
DOI: 10.6084/m9.figshare.12923240
title: Additional file 12 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 12: Table S11. Pairwise correlation coefficients between different expressed GmGRAS genes in various tissues.
DOI: 10.6084/m9.figshare.22360297
title: Factor & trait correlation 2 from Majestic tigers: personality structure in the great Amur cat

description: Correlation between factors and traits in sample 1
DOI: 10.6084/m9.figshare.8207129
title: Additional file 5: of Comparative transcriptomic analysis reveals genetic divergence and domestication genes in Diospyros

description: Table S1. Databases for the de novo sequencing of the transcriptome for the nine Diospyros samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.12923243.v1
title: Additional file 13 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 13: Table S12. Expression profiles of GmGRAS genes in soybean root during dehydration and salt stresses.
DOI: 10.6084/m9.figshare.12923246
title: Additional file 14 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 14: Table S13. Pairwise correlation coefficients between different expressed GmGRAS genes during saline stress.
DOI: 10.6084/m9.figshare.12923252.v1
title: Additional file 16 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 16: Table S15. Expression profiles of GmGRAS genes in soybean embryonic axes during seed germination.
DOI: 10.6084/m9.figshare.22360270
title: Procrustes with raters removed 1 from Majestic tigers: personality structure in the great Amur cat

description: Two-factor solution Procrustes rotation with Raters removed sample 1
DOI: 10.6084/m9.figshare.22360288
title: Raters in or out from Majestic tigers: personality structure in the great Amur cat

description: Comparing raters left in versus removed
DOI: 10.6084/m9.figshare.7680302.v2
title: The MTOR signaling pathway regulates macrophage differentiation from mouse myeloid progenitors by inhibiting autophagy

description: Understanding of the mechanism for myeloid differentiation provides important insights into the hematopoietic developmental processes. By using an ESC-derived myeloid progenitor cell model, we found that CSF2/GM-CSF triggered macrophage differentiation and activation of the MTOR signaling pathway. Activation or inhibition of the MTOR signaling enhanced or attenuated macrophage differentiation, respectively, suggesting a critical function. We further showed that macroautophagy/autophagy was inhibited with the addition of CSF2. Furthermore, pharmacological inhibition and genetic modification of autophagy enhanced macrophage differentiation and rescued the inhibitory effect on differentiation caused by MTOR inhibition. Thus, the MTOR signaling pathway regulates macrophage differentiation of myeloid progenitors by inhibiting autophagy. Our results provide new insights into the mechanisms for myeloid differentiation and may prove useful for therapeutic applications of hematopoietic and myeloid progenitor cells. <b>Abbreviations:</b> 2-DG: 2-deoxy-D-glucose; ADGRE1/F4/80: adhesion G protein-coupled receptor E1; BM: bone marrow; CQ: chloroquine; ECAR: extracellular acidification rate; ESC: embryonic stem cell; CSF2/GM-CSF: colony stimulating factor 2; CSF3/G-CSF: colony stimulating factor 3; HPC: hematopoietic progenitor cell; ITGAM/CD11b: integrin alpha M; LPS: lipopolysaccharide; MFI: median fluorescence intensity; MTOR: mechanistic target of rapamycin kinase; RPS6KB1/p70S6K1: ribosomal protein S6 kinase, polypeptide 1; shRNA: short hairpin RNA; SQSTM1/p62: sequestosome 1.
DOI: 10.6084/m9.figshare.12923229.v1
title: Additional file 2 of Genome-wide analysis of lncRNA and mRNA expression and endogenous hormone regulation during tension wood formation in Catalpa bungei

description: Additional file 2: Table S2 Number of different types of lncRNAs.
DOI: 10.6084/m9.figshare.12923234.v1
title: Additional file 10 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 10: Table S9. Cis-element analyses of the GmGRAS gene promoter regions.
DOI: 10.6084/m9.figshare.12923234
title: Additional file 10 of Genome-wide identification and characterization of GRAS genes in soybean (Glycine max)

description: Additional file 10: Table S9. Cis-element analyses of the GmGRAS gene promoter regions.