cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17193535
title: [Dataset] Security Meets Open Science. An Integrated Self-Assessment Tool for Responsible Research Data Management

description: This dataset contains the CSV file with questions and the R-Studio script underlying the Beta version of the tool presented in the poster "Security Meets Open Science. An Integrated Self-Assessment Tool for Responsible Research Data Management" (https://doi.org/10.5281/zenodo.17193163), in the context of Open Scien Fair 2025, 15-17 September, CERN, Geneve, Switzerland (https://www.opensciencefair.eu/)Future developments will include enhancements to the app, the consolidation of the question set with associated sources, detailed guidance on the libraries used, step-by-step instructions for deploying the app with the Shiny library, and, where possible, information about support services to help researchers address the questions.The script has been created so that anyone who wants to upload their own CSV file with their questions can do so. The link to the Beta version of the app that has been deployed at the moment is: https://aric-datasteward.shinyapps.io/rdm_dashboard/.

The DOI of this dataset is: 10.5281/zenodo.17193536

The license of this dataset is: Creative Commons Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/deed.it)

Dataset formats: CSV, R
DOI: 10.5281/zenodo.17193536
title: [Dataset] Security Meets Open Science. An Integrated Self-Assessment Tool for Responsible Research Data Management

description: This dataset contains the CSV file with questions and the R-Studio script underlying the Beta version of the tool presented in the poster "Security Meets Open Science. An Integrated Self-Assessment Tool for Responsible Research Data Management" (https://doi.org/10.5281/zenodo.17193163), in the context of Open Scien Fair 2025, 15-17 September, CERN, Geneve, Switzerland (https://www.opensciencefair.eu/)Future developments will include enhancements to the app, the consolidation of the question set with associated sources, detailed guidance on the libraries used, step-by-step instructions for deploying the app with the Shiny library, and, where possible, information about support services to help researchers address the questions.The script has been created so that anyone who wants to upload their own CSV file with their questions can do so. The link to the Beta version of the app that has been deployed at the moment is: https://aric-datasteward.shinyapps.io/rdm_dashboard/.

The DOI of this dataset is: 10.5281/zenodo.17193536

The license of this dataset is: Creative Commons Attribution 4.0 International (https://creativecommons.org/licenses/by/4.0/deed.it)

Dataset formats: CSV, R
DOI: 10.15139/s3/aya5hf
title: Three-Wave Longitudinal Dataset Focusing on Stress, Emotion, Emotion Regulation, COVID-19 Experiences, Workplace Stress, Health, Stress Hormones, and Intimate Relationships, 2020-2022
title: The RAP Lab COVID-19 Project

description: 1,813 individual participants (approximately 80% assigned female at birth, 79% identify as women, 81% identify as straight, 88% identify as white, with an average age of 44 years) in the United States who were in romantic relationships during the beginning of the COVID-19 pandemic for at least 4 months and cohabitating with their romantic partner (69% married, with an average relationship length of 16 years) were recruited using ResearchMatch to complete an initial online survey via Qualtrics that assessed stress, emotion, emotion regulation, COVID-19 experiences, workplace stress, health, and intimate relationship factors (see codebook for full list of measures coming soon). 1,200 of these participants completed a follow-up assessment 10 months after the first assessment and 1,142 of these participants completed an additional follow-up 22 months after the first assessment. Additionally, a subsample of 223 participants self-collected hair samples that were assessed for stress hormones during the second assessment. 

This study was approved by the Ohio University IRB #18-F-56.
DOI: 10.5517/ccdc.csd.cc2np37q
title: CCDC 2463143: Experimental Crystal Structure Determination

description: Related Article: Yasuaki Furuya, Kazunobu Igawa, Seiji Shirakawa|2025|J.Org.Chem.|90|13311|doi:10.1021/acs.joc.5c01607
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nrbpg
title: CCDC 2465296: Experimental Crystal Structure Determination

description: Related Article: Yanru Li, Jiawei Chen, Wenyu Jiao, Jianeng Ma, Yongsheng Chen, Jun Xu, Zhiqiang Liang, Shaoqiang Dong, Xing Chen, Martin Heeney, Zhuping Fei|2025|J.Am.Chem.Soc.|147|33963|doi:10.1021/jacs.5c11129
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ns8sj
title: CCDC 2466198: Experimental Crystal Structure Determination

description: Related Article: Shuo Li, Zhihao Lu, Shuo Yan, Lijun Mao, Xin Zhang, Da Ma|2025|Org.Lett.|27|10383|doi:10.1021/acs.orglett.5c03205
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ns8tk
title: CCDC 2466199: Experimental Crystal Structure Determination

description: Related Article: Shuo Li, Zhihao Lu, Shuo Yan, Lijun Mao, Xin Zhang, Da Ma|2025|Org.Lett.|27|10383|doi:10.1021/acs.orglett.5c03205
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30175576
title: <b>Dihydroxyacetone decreases the dATP pool, inducing replication stress and genomic instability in BEAS-2B cells</b>

description: Dihydroxyacetone (DHA), found in sunless tanning products and electronic cigarette aerosol, induces cytotoxic and genotoxic effects in cells. Studies across skin and systemic models demonstrated that DHA induced cell cycle arrest and mitochondrial stress, but its impact on replication is unknown. We investigated DHA exposure effects on lung epithelial BEAS-2B cells to determine if it induces replication stress and genomic instability. Acute DHA exposure generated oxidative stress, triggering 53BP1 foci formation 24 and 48 h after exposure. Evaluation of DNA damage response showed increased levels of pChk2 and pP53, demonstrating activation of double strand break response. Using a DNA fiber assay we observed decreased replication fork progression, which coincided with increased micronuclei formation. Removal of DHA from cell media partially alleviated the replication stress similar to the removal of hydroxyurea, suggesting a reversible effect. Given DHA's incorporation into glycolytic pathways and induction of mitochondrial stress, we examined its effects on nucleotide biosynthesis and pool composition. DHA exposure reduced ribonucleotide reductase (RRM1/2) expression and specifically depleted dATP pools after 48 h. We confirmed dATP depletion drives replication stress by supplementing cells with adenine during DHA exposure, which decreased DNA lesions, reduced damage signaling, and restored replication. Adenine supplementation also partially rescued DHA-induced cytotoxicity and micronuclei formation. These data demonstrate that DHA-induced DNA damage and dATP pool depletion cause replication stress in BEAS-2B cells, providing new information DHA’s genotoxic mechanism. The inability of adenine to completely rescue micronuclei formation also suggests additional mechanisms of action that impacts mitosis, requiring further investigation.<br>
DOI: 10.6084/m9.figshare.30175576.v1
title: <b>Dihydroxyacetone decreases the dATP pool, inducing replication stress and genomic instability in BEAS-2B cells</b>

description: Dihydroxyacetone (DHA), found in sunless tanning products and electronic cigarette aerosol, induces cytotoxic and genotoxic effects in cells. Studies across skin and systemic models demonstrated that DHA induced cell cycle arrest and mitochondrial stress, but its impact on replication is unknown. We investigated DHA exposure effects on lung epithelial BEAS-2B cells to determine if it induces replication stress and genomic instability. Acute DHA exposure generated oxidative stress, triggering 53BP1 foci formation 24 and 48 h after exposure. Evaluation of DNA damage response showed increased levels of pChk2 and pP53, demonstrating activation of double strand break response. Using a DNA fiber assay we observed decreased replication fork progression, which coincided with increased micronuclei formation. Removal of DHA from cell media partially alleviated the replication stress similar to the removal of hydroxyurea, suggesting a reversible effect. Given DHA's incorporation into glycolytic pathways and induction of mitochondrial stress, we examined its effects on nucleotide biosynthesis and pool composition. DHA exposure reduced ribonucleotide reductase (RRM1/2) expression and specifically depleted dATP pools after 48 h. We confirmed dATP depletion drives replication stress by supplementing cells with adenine during DHA exposure, which decreased DNA lesions, reduced damage signaling, and restored replication. Adenine supplementation also partially rescued DHA-induced cytotoxicity and micronuclei formation. These data demonstrate that DHA-induced DNA damage and dATP pool depletion cause replication stress in BEAS-2B cells, providing new information DHA’s genotoxic mechanism. The inability of adenine to completely rescue micronuclei formation also suggests additional mechanisms of action that impacts mitosis, requiring further investigation.<br>
DOI: 10.17605/osf.io/3hygu
title: Revisiting European Social Dialogue: A Systematic Literature Review

description: This repository contains all supporting materials for the systematic review Revisiting European Social Dialogue. It includes the review protocol, search strategies, study selection lists, data extraction sheets, statistical datasets, PRISMA checklist and flow diagram, and related documentation.
DOI: 10.15468/dl.4jzynu
title: Occurrence Download

description: A dataset containing 4074912 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tropicos MO Specimen Data"
 ]
}

 The dataset includes 4074912 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012244-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17193438
title: Impact of spin-orbit coupling and Zeeman interaction on the subharmonic gap structure due to multiple Andreev reflections in nanoscopic Josephson junctions - code

description: This repository contains all the code used to obtain the results presented in the manuscript entitled "Impact of spin-orbit coupling and Zeeman interaction on the subharmonic gap structure due to multiple Andreev reflections in nanoscopic Josephson junctions"
DOI: 10.5281/zenodo.17191689
title: Cell-type-specific TF target databases for stem, progenitor and iPS cells

description: Curated cell-type-specific transcription factor target databases for use with the TFEA.ChIP package (R, bioconductor).
DOI: 10.5281/zenodo.17191688
title: Cell-type-specific TF target databases for stem, progenitor and iPS cells

description: Curated cell-type-specific transcription factor target databases for use with the TFEA.ChIP package (R, bioconductor).
DOI: 10.15468/dl.4wbd3f
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Registros de mamíferos recopilados por ProCAT en diferentes zonas de Colombia"
 ]
}

 The dataset includes 252 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040447-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhfhxa
title: Occurrence Download

description: A dataset containing 21694 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is arim"
 ]
}

 The dataset includes 21694 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dq5k6
title: Occurrence Download

description: A dataset containing 11344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de Plantas Vasculares del Herbario Forestal UDBC \"Gilberto Emilio Mahecha Vega\""
 ]
}

 The dataset includes 11344 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040446-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jshjzb
title: Occurrence Download

description: A dataset containing 148926 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Ambrosia artemisiifolia L.)"
 ]
}

 The dataset includes 148926 records from 1232 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016577-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fg9a0d
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gazella granti Brooke, 1872",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 133 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtuxuv
title: Occurrence Download

description: A dataset containing 2986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((2.479608666666667 65.07073733333334, 2.479608666666667 82.15736799999999, -31.565747 82.15736799999999, -31.565747 65.07073733333334, 2.479608666666667 65.07073733333334))",
 "EventDate is 2021-03-01,2021-03-31"
 ]
}

 The dataset includes 2986 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026672-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfoqsc
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cussonia zuluensis Strey"
 ]
}

 The dataset includes 161 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebjesf
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Indigofera declinata E.Mey."
 ]
}

 The dataset includes 77 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144949-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r52sre
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is http://www.geo-artenvielfalt.de (www.geo-artenvielfalt.de) - BIRDRACE *Akassine*"
 ]
}

 The dataset includes 102 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwvkhp
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conyza garnieri Klatt"
 ]
}

 The dataset includes 44 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0144963-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3lje4i
title: Occurrence Download

description: A dataset containing 11877 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NCSM Invertebrate Paleontology Collection"
 ]
}

 The dataset includes 11877 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6a5fa
title: Occurrence Download

description: A dataset containing 1046356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.924964333333335 32.097476, 35.924964333333335 49.184106666666665, 1.8796086666666671 49.184106666666665, 1.8796086666666671 32.097476, 35.924964333333335 32.097476))",
 "EventDate is 2021-07-01,2021-07-31"
 ]
}

 The dataset includes 1046356 records from 605 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032718-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/2pn5xa
title: A new species of salamander of the genus Bolitoglossa (Caudata: Plethodontidae) from the highest massif of the Cordillera de Talamanca, Costa Rica

description: This dataset contains the digitized treatments in Plazi based on the original journal article Klank, Jeremy, Chaves, Gerardo, Castro, Kimberly, Arias, Erick (2025): A new species of salamander of the genus Bolitoglossa (Caudata: Plethodontidae) from the highest massif of the Cordillera de Talamanca, Costa Rica. Zootaxa 5642 (5): 427-450, DOI: 10.11646/zootaxa.5642.5.2, URL: https://doi.org/10.11646/zootaxa.5642.5.2AbstractThe mountains of Isthmian Central America (ICA) are biodiversity hotspot and contain a high number of endemic amphibians, many of which have been described from the region in recent decades. Neotropical salamanders of the genus Bolitoglossa have undergone an extensive diversification in the mountains of ICA, specifically in the Cordillera de Talamanca The páramo of the Cordillera de Talamanca, despite being only 1.5% of its total area, harbors six species of Bolitoglossa, which represents 14.2% of the species of the genus in the region. Based on molecular and morphological analyses, we describe a new species of the Bolitoglossa subpalmata species group from the highest massif of ICA, the páramo of the Chirripó National Park. This new species emphasizes the importance of the Cordillera de Talamanca for the speciation of salamanders in ICA and as an important site for their conservation and study.
DOI: 10.15468/vkwxse
title: A new species of Scolytus Geoffroy (Coleoptera, Curculionidae, Scolytinae) from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cao, Yufeng, Yu, Guangyu, Petrov, Alexander V., Li, You, Li, Ting, Tarno, Hagus, Cao, Guanghong, Xu, Ye, Wang, Jianguo (2023): A new species of Scolytus Geoffroy (Coleoptera, Curculionidae, Scolytinae) from Yunnan, China. Zootaxa 5284 (1): 185-191, DOI: 10.11646/zootaxa.5284.1.9, URL: http://dx.doi.org/10.11646/zootaxa.5284.1.9AbstractScolytus unicornis, a new species of Scolytus Geoffroy from Yunnan, China, is described and illustrated. Three DNA barcoding sequences (COI, 28S, CAD) of this species are provided. The new species is distinguished from other Asian Scolytus species by the longitudinal wrinkles on the frons only in the area below the eyes, a large median spine situated in the middle of the ventrite 2 base, and female frons with a slightly raised blunt tubercle above the epistoma.
DOI: 10.15468/bwxd7b
title: Prodromus of a fern flora for Bolivia. XXXIV. Didymochlaenaceae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kessler, Michael, Smith, Alan R. (2018): Prodromus of a fern flora for Bolivia. XXXIV. Didymochlaenaceae. Phytotaxa 334 (3): 295-296, DOI: 10.11646/phytotaxa.334.3.8, URL: http://dx.doi.org/10.11646/phytotaxa.334.3.8
DOI: 10.5281/zenodo.18030446
title: HisCMCL: Cross-Modal Contrastive Learning with Hierarchical Multi-Scale Fusion for Spatial Expression Prediction
DOI: 10.5281/zenodo.18030443
title: HisCMCL: Cross-Modal Contrastive Learning with Hierarchical Multi-Scale Fusion for Spatial Expression Prediction
DOI: 10.15468/erurza
title: Nepenthes parvula (Nepenthaceae), a new species from Cape York, Queensland, Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wilson, Gary W., Venter, Stephanus (2016): Nepenthes parvula (Nepenthaceae), a new species from Cape York, Queensland, Australia. Phytotaxa 277 (2): 199-204, DOI: 10.11646/phytotaxa.277.2.7, URL: http://dx.doi.org/10.11646/phytotaxa.277.2.7AbstractA new species, Nepenthes parvula (Nepenthaceae), is described from Cape York Peninsula, Queensland, Australia. The species is regarded as new based on the overall small stature, small mature pitchers and the old leaves with pitchers that are retained, distinct fine-scale morphological characteristics, and discrete habitat occupied.
DOI: 10.15468/bvn5rr
title: Salvia wuana (Lamiaceae), a new name for S. pauciflora E. Peter

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xiang, Chun-Lei, Hu, Guo-Xiong, Peng, Hua (2016): Salvia wuana (Lamiaceae), a new name for S. pauciflora E. Peter. Phytotaxa 255 (1): 99-100, DOI: 10.11646/phytotaxa.255.1.10, URL: http://dx.doi.org/10.11646/phytotaxa.255.1.10
DOI: 10.15468/dl.mc8e3q
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agrostis capillaris L.Sp.Pl."
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009387-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.