cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1411213.v4
title: Effects of steel slag applications on CH<sub>4</sub>, N<sub>2</sub>O and the yields of Indonesian rice fields: a case study during two consecutive rice-growing seasons at two sites

description: The increasing human population requires greater rice production. However, rice cultivation contributes to global warming through greenhouse gas (GHG) emissions. Technologies for reducing GHG emissions in concert with the increased rice production from rice fields are needed. The objectives of this study were to evaluate the effects of steel slag applications on methane (CH<sub>4</sub>) and nitrous oxide (N<sub>2</sub>O) emissions and rice yields. Two study sites were established at the experimental farm belonging to Indonesian Agricultural Environment Research Institute (IAERI) in Jakenan and a farmer’s field in Wedarijaksa sub-district, Indonesia. Both field trials were conducted during the dry season (DS) of 2009 and the rainy season (RS) of 2009/2010. During the DS, a randomized block design was arranged with two treatments (a control and a steel slag application at 1 Mg ha<sup>−1</sup>), which were replicated five times. During the RS, the experimental plot with 1 Mg ha<sup>−1</sup> of steel slag treatment was split into two small sub-plots to accommodate the additional 1 and 2 Mg ha<sup>−1</sup> steel slag treatments. The results showed that there was a decreasing tendency in the CH<sub>4</sub> emissions at both sites and during both seasons after steel slag applications, although there was no statistical significance. During the RS in Jakenan, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 9.1 and 10.7%, respectively. In Wedarijaksa, steel slag applications at rates of 1 and 2 Mg ha<sup>−1</sup> decreased the CH<sub>4</sub> emissions by 12.6 to 18.7%, respectively. The N<sub>2</sub>O emissions were decreased by 34 and 38% following slag applications at the 2 Mg ha<sup>−1</sup> rate during the RS in Jakenan and Wedarijaksa, respectively. The iron content of steel slag could be used to reduce not only CH<sub>4</sub> but also N<sub>2</sub>O emissions. Increased level of electron acceptors suppresses CH<sub>4</sub> and N<sub>2</sub>O emissions. The application of steel slag at 1 and 2 Mg ha<sup>−1</sup> increased rice grain yields by approximately 4.8–5.6% in Jakenan and 0.3–4.7% in Wedarijaksa. It might be better to apply steel slag at higher rates for more than two growing seasons to reach reduction in CH<sub>4</sub> and N<sub>2</sub>O emissions.
DOI: 10.6084/m9.figshare.1411163.v2
title: ESM Appendix B: Tseng ZJ and Flynn JJ. An integrative method for testing form–function linkages and reconstructed evolutionary pathways of masticatory specialization. Journal of the Royal Society Interface

description: Finite element (FE) models of terminal, internal, and theoretical nodal skulls used in biting simulations. All models are loaded with boundary conditions and material properties described in the study. Models are in Strand7 (*.st7) format; additional formats available upon request.
DOI: 10.6084/m9.figshare.1411163.v3
title: ESM Appendix B: Tseng ZJ and Flynn JJ. An integrative method for testing form–function linkages and reconstructed evolutionary pathways of masticatory specialization. Journal of the Royal Society Interface

description: Finite element (FE) models of terminal, internal, and theoretical nodal skulls used in biting simulations. All models are loaded with boundary conditions and material properties described in the study. Models are in Strand7 (*.st7) format; additional formats available upon request.
DOI: 10.6084/m9.figshare.1411143.v2
title: Cuke Particle Positions - 1998-2007 - Grid sites (seasonal supplement)

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released. These are a supplement to the main grid data set (http://dx.doi.org/10.6084/m9.figshare.1405701) with bi-weekly releases from Jan 1 to Aug 27.
DOI: 10.6084/m9.figshare.1411163.v5
title: ESM Appendix B: Tseng ZJ and Flynn JJ. An integrative method for testing form–function linkages and reconstructed evolutionary pathways of masticatory specialization. Journal of the Royal Society Interface

description: Finite element (FE) models of terminal, internal, and theoretical nodal skulls used in biting simulations. All models are loaded with boundary conditions and material properties described in the study. Models are in Strand7 (*.st7) format; additional formats available upon request.
DOI: 10.6084/m9.figshare.1411163.v4
title: ESM Appendix B: Tseng ZJ and Flynn JJ. An integrative method for testing form–function linkages and reconstructed evolutionary pathways of masticatory specialization. Journal of the Royal Society Interface

description: Finite element (FE) models of terminal, internal, and theoretical nodal skulls used in biting simulations. All models are loaded with boundary conditions and material properties described in the study. Models are in Strand7 (*.st7) format; additional formats available upon request.
DOI: 10.6084/m9.figshare.1411070
title: Inter-annual weather variability can drive the outcome of predator prey match in ponds

description: The matching of life-history-events to the availability of prey is essential for the growth and development of predators. Mismatches can constrain individuals to complete life-cycle steps in time and in ephemeral habitats it can lead to mortality unless compensation mechanisms exist. Here we measured the performance of a population of European fire-salamanders (<em>Salamandra salamandra</em>) and their prey in ephemeral ponds. We analysed how short time inter-annual variability of yearly rainfall and temperature (two consecutive years, 2011 and 2012) affects matching of predator and prey and how two different weather scenarios influenced the predator’s population structure. A single species (larvae of the mosquito <em>Aedes vexans</em>) dominates the prey community here, which occurs in high quantities only in the beginning of the season. When the occurrence of prey and predator matched during a period of sufficiently high temperatures (as in 2011), initial growth of the salamander larvae was high and population size development homogeneous. At low temperatures during matching of predatory and prey (as in 2012), the initial growth was low but the salamander larvae developed into two distinctly different sizes. Further, some individuals in the large cohort became cannibalistic and initial size differences increased. As a result, the latest (smallest) cohort disappeared completely. Temperature measurements and estimation of maximal growth rates revealed that temperature differences alone could explain the different early development between years. Our data show that weather conditions (rainfall; temperature during early growth phase) strongly determined the performance of salamander larvae in ponds. Our data also add to the match-mismatch concept that abiotic growth conditions (here: low temperature) could prevent efficient conversion of prey- into predator-biomass despite high prey availability.
DOI: 10.6084/m9.figshare.1411143.v4
title: Cuke Particle Positions - 1998-2007 - Grid sites (seasonal supplement)

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released. These are a supplement to the main grid data set (http://dx.doi.org/10.6084/m9.figshare.1405701) with bi-weekly releases from Jan 1 to Aug 27.
DOI: 10.6084/m9.figshare.1410985
title: Gaussian Job Archive for Br4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1411143.v3
title: Cuke Particle Positions - 1998-2007 - Grid sites (seasonal supplement)

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day. Text files labeled as rl_01.txt are the release locations. The grid shapefile is represents the cucumber habitat from which larvae were released. These are a supplement to the main grid data set (http://dx.doi.org/10.6084/m9.figshare.1405701) with bi-weekly releases from Jan 1 to Aug 27.
DOI: 10.6084/m9.figshare.1409657
title: ASL data demonstrating gam denoising

description: Sample asl dataset for gam denoising.
DOI: 10.6084/m9.figshare.1411070.v1
title: Inter-annual weather variability can drive the outcome of predator prey match in ponds

description: The matching of life-history-events to the availability of prey is essential for the growth and development of predators. Mismatches can constrain individuals to complete life-cycle steps in time and in ephemeral habitats it can lead to mortality unless compensation mechanisms exist. Here we measured the performance of a population of European fire-salamanders (<em>Salamandra salamandra</em>) and their prey in ephemeral ponds. We analysed how short time inter-annual variability of yearly rainfall and temperature (two consecutive years, 2011 and 2012) affects matching of predator and prey and how two different weather scenarios influenced the predator’s population structure. A single species (larvae of the mosquito <em>Aedes vexans</em>) dominates the prey community here, which occurs in high quantities only in the beginning of the season. When the occurrence of prey and predator matched during a period of sufficiently high temperatures (as in 2011), initial growth of the salamander larvae was high and population size development homogeneous. At low temperatures during matching of predatory and prey (as in 2012), the initial growth was low but the salamander larvae developed into two distinctly different sizes. Further, some individuals in the large cohort became cannibalistic and initial size differences increased. As a result, the latest (smallest) cohort disappeared completely. Temperature measurements and estimation of maximal growth rates revealed that temperature differences alone could explain the different early development between years. Our data show that weather conditions (rainfall; temperature during early growth phase) strongly determined the performance of salamander larvae in ponds. Our data also add to the match-mismatch concept that abiotic growth conditions (here: low temperature) could prevent efficient conversion of prey- into predator-biomass despite high prey availability.
DOI: 10.6084/m9.figshare.1409672
title: Processing and representation of ambiguous words in Chinese reading: Evidence from eye movements

description: In three experiments, we used eye tracking to investigate whether the representation and processing of polysemy and homonymy in Chinese reading were similar or different. Readers read sentences containing homonymous words (Experiment 1), polysemous words (Experiment 2), or both (Experiment 3). The contexts of text preceding the target words were manipulated to bias the subject toward reading the ambiguous words according to their dominant, subordinate, or neutral meanings. Similarly, disambiguating regions following the target words were also manipulated to favor either the dominant or subordinate meanings of ambiguous words. The results of these three experiments showed that there were similar patterns in eye movements when Chinese subjects read sentences containing homonymous and polysemous words. The study also found that subjects took longer to read the target word and the disambiguating text following it when the prior context and disambiguating regions favored divergent meanings rather than the same meaning. These results suggested that homonymy and polysemy are represented similarly in the mental lexicon when a particular meaning (sense) is fully specified by disambiguating information. Furthermore, multiple meanings (senses) are represented in Chinese reading as separate lexical entries in the mental lexicon.
DOI: 10.6084/m9.figshare.1410985.v1
title: Gaussian Job Archive for Br4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1409653
title: 10-taxon

description: 10-taxon simulated datasets.
DOI: 10.6084/m9.figshare.1409649
title: Volume 1, Issue 4

description: Volume 1, Issue 4
DOI: 10.6084/m9.figshare.1409653.v1
title: 10-taxon

description: 10-taxon simulated datasets.
DOI: 10.6084/m9.figshare.1409647
title: Volume 1, issue 2

description: Volume 1, Issue 2
DOI: 10.6084/m9.figshare.1409648
title: Volume 1n Issue 3

description: Volume 1, Issue 3
DOI: 10.6084/m9.figshare.1409672.v1
title: The processing and representation of ambiguous words

description: In three experiments, we used eye tracking to investigate whether the representation and processing of polysemy and homonymy in Chinese reading were similar or different. Readers read sentences containing homonymous words (Experiment 1), polysemous words (Experiment 2), or both (Experiment 3). The contexts of text preceding the target words were manipulated to bias the subject toward reading the ambiguous words according to their dominant, subordinate, or neutral meanings. Similarly, disambiguating regions following the target words were also manipulated to favor either the dominant or subordinate meanings of ambiguous words. The results of these three experiments showed that there were similar patterns in eye movements when Chinese subjects read sentences containing homonymous and polysemous words. The study also found that subjects took longer to read the target word and the disambiguating text following it when the prior context and disambiguating regions favored divergent meanings rather than the same meaning. These results suggested that homonymy and polysemy are represented similarly in the mental lexicon when a particular meaning (sense) is fully specified by disambiguating information. Furthermore, multiple meanings (senses) are represented in Chinese reading as separate lexical entries in the mental lexicon.
DOI: 10.6084/m9.figshare.1409646
title: Evidence of homologous recombination in canine distemper virus, a non-segmented negative sense RNA virus

description: Canine distemper virus (CDV) is a major pathogen of dogs that belongs to the genus Morbillivirus of the family Paramyxoviridae. It has a non-segmented single-stranded negative sense RNA genome and can cause severe disease in dogs and wild carnivores. Although homologous recombination has been demonstrated in many members of Paramyxoviridae, for CDV, these events are rarely reported. To detect possible recombination events, all the complete CDV genomes available in GenBank up to August 2014 were screened using distinct algorithms to detect genetic conversions and incongruent phylogenies. Eight putative recombinant viruses derived from different CDV genotypes and also from different hosts were detected. The breakpoints of the recombinant strains were located mainly on the fusion and the hemagglutinin glycoproteins. Our work reinforces that homologous recombination is a frequent phenomena in morbillivirus populations under natural replication and suggests that CDV vaccine strains can play an important role in shaping the evolution of this virus.
DOI: 10.6084/m9.figshare.1409647.v1
title: Volume 1, issue 2

description: Volume 1, Issue 2
DOI: 10.6084/m9.figshare.1409648.v1
title: Volume 1n Issue 3

description: Volume 1, Issue 3
DOI: 10.6084/m9.figshare.1409649.v1
title: Volume 1, Issue 4

description: Volume 1, Issue 4
DOI: 10.6084/m9.figshare.1409672.v3
title: Processing and representation of ambiguous words in Chinese reading: Evidence from eye movements

description: In three experiments, we used eye tracking to investigate whether the representation and processing of polysemy and homonymy in Chinese reading were similar or different. Readers read sentences containing homonymous words (Experiment 1), polysemous words (Experiment 2), or both (Experiment 3). The contexts of text preceding the target words were manipulated to bias the subject toward reading the ambiguous words according to their dominant, subordinate, or neutral meanings. Similarly, disambiguating regions following the target words were also manipulated to favor either the dominant or subordinate meanings of ambiguous words. The results of these three experiments showed that there were similar patterns in eye movements when Chinese subjects read sentences containing homonymous and polysemous words. The study also found that subjects took longer to read the target word and the disambiguating text following it when the prior context and disambiguating regions favored divergent meanings rather than the same meaning. These results suggested that homonymy and polysemy are represented similarly in the mental lexicon when a particular meaning (sense) is fully specified by disambiguating information. Furthermore, multiple meanings (senses) are represented in Chinese reading as separate lexical entries in the mental lexicon.
DOI: 10.6084/m9.figshare.1409672.v2
title: Processing and representation of ambiguous words in Chinese reading: Evidence from eye movements

description: In three experiments, we used eye tracking to investigate whether the representation and processing of polysemy and homonymy in Chinese reading were similar or different. Readers read sentences containing homonymous words (Experiment 1), polysemous words (Experiment 2), or both (Experiment 3). The contexts of text preceding the target words were manipulated to bias the subject toward reading the ambiguous words according to their dominant, subordinate, or neutral meanings. Similarly, disambiguating regions following the target words were also manipulated to favor either the dominant or subordinate meanings of ambiguous words. The results of these three experiments showed that there were similar patterns in eye movements when Chinese subjects read sentences containing homonymous and polysemous words. The study also found that subjects took longer to read the target word and the disambiguating text following it when the prior context and disambiguating regions favored divergent meanings rather than the same meaning. These results suggested that homonymy and polysemy are represented similarly in the mental lexicon when a particular meaning (sense) is fully specified by disambiguating information. Furthermore, multiple meanings (senses) are represented in Chinese reading as separate lexical entries in the mental lexicon.
DOI: 10.6084/m9.figshare.1409645
title: Volume 1 Issue 1

description: Volume 1 issue 1 is the inaugural issue of the IJHCS.
DOI: 10.6084/m9.figshare.1409594
title: SHERPA/FACT Accuracy Testing Methodology

description: Methodology for SHERPA/FACT accuracy testing, to accompany and contextualise data
DOI: 10.6084/m9.figshare.1409594.v1
title: SHERPA/FACT Accuracy Testing Methodology

description: Methodology for SHERPA/FACT accuracy testing, to accompany and contextualise data
DOI: 10.6084/m9.figshare.1409645.v1
title: Volume 1 Issue 1

description: Volume 1 issue 1 is the inaugural issue of the IJHCS.
DOI: 10.6084/m9.figshare.1409488
title: Reults S1

description: An archive containing input files, scripts, a pickled Project file and an HTML report
DOI: 10.6084/m9.figshare.1409572
title: The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

description: The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes Please note that there is an Excel Sheet indicating primer pads that need to be removed before processing.
DOI: 10.6084/m9.figshare.1409581
title: Quasicaecilia texana (USNM 22079) surface file

description: 3D surface of segmented micro-CT in .stl format.
DOI: 10.6084/m9.figshare.1409582
title: Quasicaecilia texana (USNM 22079) micro-CT stack

description: Complete 8-bit JPG stack of <em>Quasicaecilia texana</em>, USNM 22079
DOI: 10.6084/m9.figshare.1409582.v1
title: Quasicaecilia texana (USNM 22079) micro-CT stack

description: Complete 8-bit JPG stack of <em>Quasicaecilia texana</em>, USNM 22079
DOI: 10.6084/m9.figshare.1409488.v1
title: Reults S1

description: An archive containing input files, scripts, a pickled Project file and an HTML report
DOI: 10.6084/m9.figshare.1409581.v1
title: Quasicaecilia texana (USNM 22079) surface file

description: 3D surface of segmented micro-CT in .stl format.
DOI: 10.6084/m9.figshare.1409572.v2
title: The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

description: The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes Please note that there is an Excel Sheet indicating primer pads that need to be removed before processing.
DOI: 10.6084/m9.figshare.1409572.v1
title: The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

description: The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes Please note that there is an Excel Sheet indicating primer pads that need to be removed before processing.
DOI: 10.6084/m9.figshare.1409473
title: GI Interactions

description: Conceptual diagrams of GI/SUDS interactions as discussioned in Hoang and Fenner (2015)
DOI: 10.6084/m9.figshare.1409470
title: Human-Machine Interface based on Electrocutaneous Menu

description: Repository for the paper Gonzalez-Vargas J, Dosen S, Amsuess S, Yu W, Farina D. "Human-Machine Interface based on Electrocutaneous Menu" PLOS ONE.
DOI: 10.6084/m9.figshare.1409467
title: Fig3_GreenHydrology

description: A conceptual diagram of how Sustainable Urban Drainage Systems/Green Infrastructure interact with wider urban infrastructure
DOI: 10.6084/m9.figshare.1409465
title: Figure 3_ GI's built environment functions under the non-flood condition

description: A conceptual diagram of SuDS/GI functions under the non-flood condition
DOI: 10.6084/m9.figshare.1409466
title: Fig3_GI ecological functions under the non-flood condition

description: A conceptual diagram of SuDS/GI functions under the non-flood condition
DOI: 10.6084/m9.figshare.1409465.v1
title: Figure 3_ GI's built environment functions under the non-flood condition

description: A conceptual diagram of SuDS/GI functions under the non-flood condition
DOI: 10.6084/m9.figshare.1409467.v1
title: Fig3_GreenHydrology

description: A conceptual diagram of how Sustainable Urban Drainage Systems/Green Infrastructure interact with wider urban infrastructure
DOI: 10.6084/m9.figshare.1409464
title: GI interactions under the flood condition

description: A conceptual diagram of SuDS/GI functions under the flood condition
DOI: 10.6084/m9.figshare.1409466.v1
title: Fig3_GI ecological functions under the non-flood condition

description: A conceptual diagram of SuDS/GI functions under the non-flood condition