cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-xm2-bnhw
title: Nature portrayed in images in Dutch Brazil - Appendix (S4): Sources of the plant woodcuts in the India Utriusque re Naturali et Medica (1658) Database

description: I designed this publication to accompany the research article “Nature portrayed in images in Dutch Brazil: Tracing the sources of the plant woodcuts in the Historia Naturalis Brasiliae (1648)” by Mireia Alcantara Rodriguez, Tinde van Andel, and Mariana Françozo. This visual database is directed to everyone attracted to the fascinating world of tropical plants and Renaissance and early modern botanical art, with the main focus on the flora of Dutch Brazil (the northeastern territories of Brazil colonized by the Dutch from 1630 to 1654). This PDF file was built with Filemaker Pro software in a database format, and both files are available open access in the repository of Leiden University via: https://doi.org/10.17026/dans-xm2-bnhw.The main purpose of this file is to present in a visual form the potential sources used to create the plant woodcuts in the India Utriusque re Naturali et Medica (IURNM, 1658). A brief text accompanies every plant entry in which I discuss the various levels of correlation among sources. The IURNM was majorly based on the Historia Naturalis Brasiliae (HNB, 1648), which aimed to portray the natural history of Brazil in the 1640s as perceived by German naturalist George Marcgrave (1610-1643) and Dutch physician Willem Piso (1611-1678) – among others. Piso, discontent with the work made by the editor of the HNB, Johannes de Laet (1581-1649), edited his work to create the IURNM. This file can be read independently but its main function is to complement and depict the data analyzed in the main paper, which is also displayed in an Excel spreadsheet (S3). The main paper aimed to answer what were the sources used to elaborate the plant woodcuts in the IURNM, first, by arranging the woodcut images and their corresponding species found in other visual sources from Dutch Brazil and analyzing their similarities; and second, by searching for the remaining sources in contemporary or older treatises that included engravings similar to the IURNM woodcuts. By doing so, the various methods of visual-knowledge-making are discussed, including the methods of plant collection and flora representation. This publication presents a catalogue of the data on plant woodcuts in the IURNM, including all woodcuts that are not exact copies of those previously used in the HNB. There are 62 database entries and 248 images, which correspond to 59 plant taxa. Related to this research, I created a dataset (S1) and its corresponding PDF file (Appendix S2) to analyze the sources of the plant woodcuts in the HNB. It is recommended to check both visual files (S2 vs. S4) to observe the diversity of visual knowledge-production in both works.
DOI: 10.17026/dans-zzv-7t6h
title: EPDS subscales

description: Substudy of the PostUp project, examining the effectiveness of screening for postpartum depression bij Child Health CareThis substudy examined the obtained EPDS-data during the project:Does the EPDS has a 2- or 3 factor structure, is this structure stable across the postpartum period, and could a subscale be of value to detect anxiety?
DOI: 10.17026/dans-xuk-xb74
title: Opioid prescribing in out-of-hours primary care in Flanders and the Netherlands: a retrospective cross-sectional study

description: Increased opioid prescribing has raised concern, as the benefits of pain relief not always outweigh the risks. Acute and chronic pain is often treated in a primary care out-of-hours (OOH) setting. This setting may be a driver of opioid use but the extent to which opioids are prescribed OOH is unknown. We aimed to investigate weak and strong opioid prescribing at OOH primary care services (PCS) in Flanders (Northern, Dutch-speaking part of Belgium) and the Netherlands between 2015 and 2019. We performed a retrospective cross sectional study using data from routine electronic health records of OOH-PCSs in Flanders and the Netherlands (2015-2019). The data described here concern data from the Netherlands, which were retrieved from the Nivel Primary Care Database. Our primary outcome was the opioid prescribing rate per 1000 OOH-contacts per year, in total and for strong (morphine, hydromorphone, oxycodone, oxycodone and naloxone, fentanyl, tapentadol, and buprenorphine and weak opioids (codeine combinations and tramadol and combinations) and type of opioids separately. We observed large differences in strong opioid prescribing at OOH-PCSs between Flanders and the Netherlands that are likely to be caused by differences in accessibility of secondary care, and possibly existing opioid prescribing habits. Measures to ensure judicious and evidence-based opioid prescribing need to be tailored to the organisation of the healthcare system.
DOI: 10.17026/dans-xzv-32r2
title: Nivel Corona Cohort: a description of the cohort and methodology used for combining general practice electronic records with patient reported outcomes to study impact of a COVID-19 infection

description: A population-based COVID-19 cohort was set up in the Netherlands to gain comprehensive insight in the short- and long-term effects of COVID-19 in the general population. A subset of this data, deposited and described here, was used for the aims to describe the methodology and infrastructure used to recruit individuals with COVID-19 and the representativeness of the population-based cohort and to characterize the population by description of their symptoms and health care usage during the acute COVID-19 phase.The starting point of the set-up of the cohort was to recruit participants in routinely recorded, general practice electronic health records (EHR) data, which are sent to the Netherlands Institute for Health Services Research Primary Care Database (Nivel-PCD) on a weekly basis. Patients registered with COVID-19 were flagged in the Nivel-PCD based on their COVID-19 diagnoses. Flagged patients were invited for participation by their general practitioner via a trusted third party. Participating patients received a series of four questionnaires over the duration of one year allowing for a combination of data from patient reported outcomes and EHRs.The Nivel Corona Cohort consists of 442 participants and here a subset of the data from the first questionnaire is shown. The Nivel Corona Cohort is population-based, containing a complete image of severity of symptoms from patients with none or hardly any symptoms to those who were hospitalized due to the COVID-19. The five most prevalent symptoms during the acute COVID-19 phase were fatigue (90.5%), reduced condition (88.2%), coughing/sneezing/stuffy nose (79.3%), headache (75.4%), and myalgia (66.7%). The population-based Nivel Corona Cohort provides ample opportunities for future studies to gain comprehensive insight in the short- and long-term effects of COVID-19 by combining patients’ perspectives and clinical parameters via the EHRs within a long-term follow-up of the cohort.
DOI: 10.2909/8174a95b-29ad-4d9c-95e7-a1e0a6d94aca
title: High Resolution Vegetation Phenology and Productivity: Leaf Area Index (raster 10m) version 1 revision 1, Sep. 2021

description: This metadata refers to the Leaf Area Index (LAI) dataset, one of the near real-time (NRT) Vegetation Index products of the pan-European High Resolution Vegetation Phenology and Productivity (HR-VPP), component of the Copernicus Land Monitoring Service (CLMS). The Leaf Area Index (LAI) is defined as half the total area of green elements of the canopy per unit horizontal ground area. The satellite-derived value corresponds to the total green LAI of all the canopy layers, including the understory which may represent a very significant contribution, particularly for forests. The LAI dataset is made available as raster files with 10 x 10m resolution, in UTM/WGS84 projection corresponding to the Sentinel-2 tiling grid, for those tiles that cover the EEA38 countries and the United Kingdom and for the period from October 2016 until today, with daily updates. Each file has an associated quality indicator (QFLAG2) to assist users with the screening of clouds, shadows from clouds and topography, snow and water surfaces.
DOI: 10.17026/dans-z3s-3d7t
title: Wet and dry tropical forests show opposite successional pathways in wood density but converge over time

description: We analyse how community wood density (WD) recovers during secondary tropical forest succession. In wet forests succession proceeds from low to high WD, in dry forests from high to low WD, resulting in convergence of community WD of dry and wet forests over time, as vegetation cover builds up.
DOI: 10.17026/dans-zy5-4d8d
title: Effectiveness of a blended multidisciplinary intervention for patients with moderate medically unexplained physical symptoms (PARASOL): a cluster randomized clinical trial

description: In patients with moderate Medically Unexplained Physical Symptoms (MUPS), interventions focusing on both physical and psychological aspects are recommended. A proactive, blended and integrated physical therapy and mental health nurse intervention (PARASOL) might reduce complaints, stimulate self-management and prevent chronicity. Therefore, the aim of this study was to investigate short- and long-term effectiveness of the PARASOL intervention compared to usual care on subjective symptom impact and quality of life in patients with moderate MUPS.We conducted a cluster randomized clinical trial. The 12-week intervention integrated face-to-face sessions with the physical therapist and mental health nurse and access to a web-based program consisting of graded activity, exercises and information modules. Primary outcomes were subjective symptom impact, as registered with the adequate relief question, and quality of life. Secondary outcomes were severity of (psychosocial) symptoms, overall current health, physical behaviour, illness perceptions, and self-management skills. Assessment took place at baseline, after three and twelve months.Compared to usual care (n=80), the number of patients in the PARASOL intervention (n=80) that reported adequate short-term relief was higher (31.2% in intervention group vs. 13.7% in control group). On quality of life and secondary outcomes no significant between group differences in short- and long-term were found.The PARASOL intervention does improve subjective symptom impact of patients with moderate MUPS on short-term. No additional beneficial effects on the other outcomes and the long-term were found.
DOI: 10.17026/dans-zrv-ayut
title: Reach Centering Pregnancy

description: Pregnant women with a migration background or a lower socioeconomic status participate less in group care CenteringPregnancy (CP). After discussions and interviews with, among others, women from the target group and providers of CP, recruitment strategies were developed and tested in a number of midwifery practices. In addition to a practice analysis and a training for caregivers, an 'Early Meeting' has been implemented; In this group meeting, themes are discussed that are important in the first 12 weeks of pregnancy and women also experience what group care is like. Due to COVID-19, this meeting has been transformed into an online version. Almost all women participated in CP after the had followed an Early Meeting. Data from the electronic registrations of de midwifery care practices showed that participation in CP was especially higher in one of the three practices after the start of the early meeting compared to a period before the implementation of the Early Meeting: also relatively many women with a lower SES and migrant background participated. In particular, organizational and recruitment bottlenecks were mentioned for the Early Meeting. Midwives reported that, due to the Early Meeting, women had more knowledge about the first 12 weeks and were better prepared for the intake consultation at the midwifery practice.
DOI: 10.17026/dans-zkb-cgqr
title: Personalized orthotic care to improve functioning in patients with neuromuscular diseases

description: Lower extremity muscle strength is often impaired in people with neuromuscular disorders (NMD). This leads to mobility problems such as increased walking effort and increased risk of falling. Leg orthoses are commonly provided to improve mobility. However, evidence for the effectiveness of leg orthoses to improve walking in this patient group is limited and there is an absence of standardised practice in orthotic prescription. In 2012, a Dutch orthotic guideline was developed to standardize the orthotic treatment process and to improve the effectiveness of les orthoses in NMD (specialized orthotic care). This efficiency study examined the effectiveness and cost-effectiveness of specialised orthotic care compared with usual orthotic care in adults with slowly progressive NMD.
DOI: 10.17026/dans-2b8-yswb
title: SLC7A8 coding for LAT2 is associated with early disease progression in osteosarcoma and transports doxorubicin

description: Background: Despite (neo)adjuvant chemotherapy with cisplatin, doxorubicin and methotrexate, some patients with primary osteosarcoma progress during first-line systemic treatment and have a poor prognosis. In this study, we investigated whether patients with early disease progression (EDP), are characterized by a distinctive pharmacogenetic profile.Methods and Findings: Germline DNA from 287 Dutch high-grade osteosarcoma patients was genotyped using the DMET Plus array (containing 1,936 genetic markers in 231 drug metabolism and transporter genes). Associations between genetic variants and EPD were assessed using logistic regression models. The datafile (Hurkmans_SumStat_LogReg_DMET_EarlyProgressiveDisaese_CovarMetasSexAge_GRCh37.txt) contains the results of this anaylsis.Conclusions: This study identified a novel locus in SLC7A8 to be associated with EPD in osteosarcoma.
DOI: 10.17026/dans-276-ca74
title: Plant community and soil properties drive arbuscular mycorrhizal fungal diversity: a case study in young and old-growth tropical forests

description: this project is research the diversity and community of arbuscular mycorrhizal fungi in tropical forests, and the potential factors which regulate the AMF diversity.
DOI: 10.17026/dans-z9r-2hbz
title: Advance Care Planning in de eerste lijn met de kwetsbare oudere patiënt en diens naasten

description: Wanneer zorgverleners op de hoogte zijn van voorkeuren voor zorg rond het levenseinde van oudere patiënten, kunnen ze naar deze kennis handelen. Advance Care Planning (ACP) is een hulpmiddel om te zorgen dat zorg aansluit bij de wensen en behoeften van de patiënt en diens naasten. Dit project bouwt voort op ervaringen met ACP in West Friesland waar verpleegkundigen en eerstverantwoordelijk verzorgenden van woonzorgcentra een eerste gesprek hebben met de bewoner (als opmaat voor ACP met de huisarts).Doelstellingen- De bestaande training en materialen bruikbaar maken voor zowel huisartsen praktijken als woonzorgcentra.- Het verkrijgen van inzicht in effecten en mogelijke verbeterpunten van (toepassing van) ACP.- Brede implementatie van ACP in Consortium Noord Holland en Flevoland bij positieve ervaringen.ResultatenEindproducten zijn een draaiboek voor implementatie van ACP in de eerste lijn, een trainingsmodule voor ACP en een wetenschappelijke onderbouwing voor het gebruik van ACP in de eerste lijn.ZonMw projectpagina: https://www.zonmw.nl/nl/over-zonmw/onderwijs/programmas/project-detail/palliantie-meer-dan-zorg/advance-care-planning-in-de-eerste-lijn-voor-de-kwetsbare-oudere-patient-en-diens-naasten/Projectpagina op website Consortium Noord Holland en Flevoland, met resultaten en downloadbare implementatie materialen: https://palliatievezorgnoordhollandflevoland.nl/Projecten/Advance-Care-PlanningContact: eol@vumc.nl
DOI: 10.17026/dans-zqw-6fca
title: Take it slow

description: This is the dataset for the field study testing the efficacy of a 'smart fork' to decelerate eating. The fork provides vibrotactile feedback when eating rate is too high. The research reported in this manuscript was registered on 4 November 2015 in the Netherlands Trial Register with number NL5432.
DOI: 10.17026/dans-xu2-zmke
title: Study of seasonal phytoplankton ecology within the Alcobaça Sustainable Development Reserve - Tucuruí reservoir, Pará, Brazil

description: This study aimed to investigate phytoplankton seasonal and diurnal variation in a sustainable development reserve in Brazil.
DOI: 10.17026/dans-zke-thy4
title: Dataset for: "Shrub decline and expansion of wetland vegetation revealed by very high resolution land cover change detection in the Siberian lowland tundra"

description: Input materials, scripts and results for:- Trend analyses in MODIS Enhanced Vegetation Index for 2000-2019 in the Indigirka Lowlands, Sakha Republic, Russian federation.- Land Cover Change Detection of Vegetation Functional Groups in an Arcitc tundra site using very high resolution (0.5) satellite images in a focus area in the Kytalyk Reserve, Indigirka Lowlands over the period 2010-2019.
DOI: 10.17026/dans-xtm-cyhg
title: 3D upstream passability of novel river training structures by migratory fish in the river Waal

description: Abstract:Longitudinal training dams (LTDs) are novel river training structures that divide a river into a main navigation channel and protected shore channels. High velocities at the inflows of these shore channels in the river Waal (the Netherlands) pose a potential bottleneck for migratory fish species swimming upstream. This study assessed the passability of the inflows using flow velocity datasets from governmental monitoring campaigns collected during high river discharges (Q = 3489-5066 m3/s at Lobith Monitoring Station) with an ADCP. The swimming performance of several migratory fish species were estimated from their total lengths (TLs). A new 3D approach to visualize the flow velocity data using Voxler® software is presented. Gasterosteus aculeatus aculeatus was the only fish species with an adult life stage unable to pass the 9 cases tested due to its small size. The juvenile European eel and thicklip grey mullet passed 1 and 0 of the cases, respectively. The most upstream inflow, located in the inner bend of the river, was the most passable. We recommend maximizing the cross-sectional area of the inflow sills in order to reduce the flow velocities experienced by migrating fish during high river discharges. This approach may be useful to assess passability at other locations and training structures.Dataset description: This dataset consists of monitoring flow velocity data collected by a contractor (appointed by Rijkswaterstaat) using an Acoustic Doppler Current Profiler (ADCP) during high river discharges in the inflows of the longitudinal training dams in the river Waal, the Netherlands.
DOI: 10.17026/dans-25y-ytpy
title: Effects of guanotrophication and warming on the abundance of green algae, cyanobacteria and microcystins in Lake Lesser Prespa, Greece

description: The data set contains the raw data used for the analysis in a study to the effect of guanotrophication on algae abundance in Lake Lesser Prespa Greece, as described in the research paper by Valentini et al. in PLOSONE. Lake Lesser Prespa in Greece is a vital breeding habitat for the Dalmatian and Great White Pelican. However, eutrophication processes are distressing the lake system and the outbreaks of cyanobacterial blooms during the warm months may pose a threat to aquatic organisms due to the presence of microcystins (MCs). In this study we hypothesize that nutrients (eutrophication), nutrient-rich pelican droppings (guanotrophication) and warming (climate change) can affect the algal growth and MCs production in the water layer of Lake Lesser Prespa.An experiment (bioassay) was set up where water of (three sites in) lake Lesser Prespa was incubated at two temperatures (20°C and 30°C). Five treatments were used at both temperatures to study the algal development on a short term: 1) control, 2) nitrogen addition, 3) phosphorus addition, 4) nitrogen+phosphorus addition 5) bird dropping addition.In this repository the following data are included:-Chlorophyl-a concentrations in the water (initial and end-concentrations and of additional validation experiment);-Several nutrient concentrations in the water (initial and end-concentrations);-Several nutrient concentrations in bird droppings of pelicans;-Microcystin concentrations in the water (end-concentrations).
DOI: 10.17026/dans-xpq-v3y2
title: BCD Formative Research for PrEP Demand Creation

description: The dataset contains the research protocols, analysis checklist and SRQR checklist for a formative research study to develop a Pre-Exposure Prophylaxis a demand creation campaign among young women in a South-African Township.
DOI: 10.17026/dans-zg3-b2jf
title: Disclosure of paleoecological datasets of IBED, FNWI, UvA

description: The Paleoecology group of IBED has collected sediment cores in lakes and analyzed the samples for pollen during many decades, but the resulting data have not been digitized in a systematic way. This project aims to archive data and make them public domain. The focus of this project is on the large amounts of pollen data from South America, mainly Colombia. Metadata were collected from the publications, where necessary taxon names were adapted to modern nomenclature, all age models were fitted using the same methodology and data were entered in spreadsheets, together with the raw pollen counts. From these spreadsheets ASCII files were created (CSV-format) and archived on the DANS server (EASY, https://easy.dans.knaw.nl/). The data from 62 sediment cores were uploaded: 3 cores from Bolivia, 53 from Colombia, 1 from Ecuador, 1 from Guatemala, 1 from Mexico, and 3 from Peru. All these data are now in EASY and can be downloaded from there.
DOI: 10.17026/dans-xee-h224
title: Data from: Growth forms and life-history strategies predict the occurrence of aquatic macrophytes in relation to environmental factors in a shallow peat lake complex

description: Data from: Growth forms and life-history strategies predict the occurrence of aquatic macrophytes in relation to environmental factors in a shallow peat lake complex.Journal: Hydrobiologia.This datafile is part of a study that demonstrates, using a survey, that growth forms and life-history strategies in relation to environmental factors could drive the occurrence of aquatic macrophytes in a shallow peat lake. The survey took place in July 2018 in a shallow peat lake (Stichts Ankeveensche Plassen) in the Netherlands. In a field survey, we sampled 64 points in a shallow peat lake and related macrophyte occurrence to growth forms (floating-leaved rooted and submerged), life-history strategies for overwintering (turions, seeds, rhizomes) and environmental factors (water depth, fetch, and porewater nutrients).This dataset contains data of plant occurence, plant traits, and abiotic conditions at all sampled plots.
DOI: 10.17026/dans-xxt-muff
title: Data from: Life-cycle informed restoration: engineering settlement substrate material characteristics and structural complexity for reef formation

description: Data from: Life-cycle informed restoration: engineering settlement substrate material characteristics and structural complexity for reef formation.The manuscript that has been based on these data is published in Journal of Applied EcologyThese datafiles are part of a study that defines and experimentally test the idea that life cycle-informed approaches that focus on overcoming multiple bottlenecks throughout the target species’ lifetime, instead of focusing on a single life stage, can improve restoration yields. The three experiments were conducted in the Netherlands and in Florida USA.The datasets contain data obtained from three manipulative field experiments on mussel and oyster biomass, length and individuals from the Netherlands and Florida USA.