cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5522/04/28778023.v1
title: running_in_box_photometry: photometry data for movements outside of task

description: <br>Dopaminergic action prediction errors serve as a value-free teaching signalAnimals’ choice behavior is characterized by two main tendencies: taking actions that led to rewards and repeating past actions. Theory suggests these strategies may be reinforced by different types of dopaminergic teaching signals: reward prediction error to reinforce value-based associations and movement-based action prediction errors to reinforce value-free repetitive associations. Here we use an auditory-discrimination task in mice to show that movement-related dopamine activity in the tail of the striatum encodes the hypothesized action prediction error signal. Causal manipulations reveal that this prediction error serves as a value-free teaching signal that supports learning by reinforcing repeated associations. Computational modelling and experiments demonstrate that action prediction errors alone cannot support reward-guided learning but when paired with the reward prediction error circuitry they serve to consolidate stable sound-action associations in a value-free manner. Together we show that there are two types of dopaminergic prediction errors that work in tandem to support learning, each reinforcing different types of association in different striatal areas.<br>These are the striatum tail dlight photometry recordings of mice running in a box, not doing a task. Used by extended data figure 5 h, i, j.
DOI: 10.15468/dl.z4t5u5
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "OccurrenceStatus is Present",
 "TaxonKey is Nepenthes rafflesiana Jack"
 ]
}

 The dataset includes 193 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019604-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq88cm
title: Occurrence Download

description: A dataset containing 976709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Accipiter badius (Gmelin, 1788), Accipiter gentilis (Linnaeus, 1758), Accipiter gularis (Temminck & Schlegel, 1844), Accipiter nisus (Linnaeus, 1758), Accipiter soloensis (Horsfield, 1821), Accipiter trivirgatus (Temminck, 1824), Accipiter virgatus (Temminck, 1822), Aegypius monachus (Linnaeus, 1766), Aquila chrysaetos (Linnaeus, 1758), Aquila fasciata Vieillot, 1822, Aquila heliaca Savigny, 1809, Aquila nipalensis Hodgson, 1833, Aviceda jerdoni (Blyth, 1842), Aviceda leuphotes (Dumont, 1820), Butastur indicus (Gmelin, 1788), Butastur liventer (Temminck, 1827), Butastur teesa (Franklin, 1831), Buteo buteo (Linnaeus, 1758), Buteo hemilasius Temminck & Schlegel, 1844, Buteo japonicus Temminck & Schlegel, 1844, Buteo lagopus (Pontoppidan, 1763), Buteo refectus Portenko, 1935, Buteo rufinus (Cretzschmar, 1829), Circaetus gallicus (Gmelin, 1788))",
 "Geometry POLYGON((73.4990129472761 3.8378885575508,135.087376878694 3.8378885575508,135.087376878694 53.5616571398172,73.4990129472761 53.5616571398172,73.4990129472761 3.8378885575508))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Specimen)"
 ]
}

 The dataset includes 976709 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019590-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33mr38
title: Occurrence Download

description: A dataset containing 30062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Carabus violaceus Linnaeus, 1758"
 ]
}

 The dataset includes 30062 records from 482 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019607-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14185266
title: Patterns of object play behaviour and its functional implications in free-flying ravens (supplementary data)

description: This resource contains the processed data sets and R scripts associated with the article titled "Patterns of object play behaviour and its functional implications in free-flying ravens" authored by Awani Bapat, Anna E Kempf, Salome Friry, Palmyre H Boucherie, Thomas Bugnyar, published in Scientific Reports on 02-01-2025.
DOI: 10.5281/zenodo.14185265
title: Patterns of object play behaviour and its functional implications in free-flying ravens (supplementary data)

description: This resource contains the processed data sets and R scripts associated with the article titled "Patterns of object play behaviour and its functional implications in free-flying ravens" authored by Awani Bapat, Anna E Kempf, Salome Friry, Palmyre H Boucherie, Thomas Bugnyar, published in Scientific Reports on 02-01-2025.
DOI: 10.15468/dl.6334a3
title: Occurrence Download

description: A dataset containing 405280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Caledonia",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 405280 records from 295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019601-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkmtrn
title: Occurrence Download

description: A dataset listing the 621 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "DatasetKey is DOF/BirdLife Denmark - Observations from DOFbasen",
 "Year is one of (2000, 2018)"
 ]
}

 The dataset's 621 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019606-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjtphs
title: Occurrence Download

description: A dataset containing 1627 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Xenopus laevis (Daudin, 1802)"
 ]
}

 The dataset includes 1627 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019609-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52c83w
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Dendrobium Sw."
 ]
}

 The dataset includes 79 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019610-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8fhhdf
title: Occurrence Download

description: A dataset containing 4031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Clivina collaris (Herbst, 1784)"
 ]
}

 The dataset includes 4031 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019612-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gd5x6
title: Occurrence Download

description: A dataset containing 1802550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "DatasetKey is DOF/BirdLife Denmark - Observations from DOFbasen",
 "Year is one of (2000, 2018)"
 ]
}

 The dataset includes 1802550 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019605-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28945079
title: Supplementary Material for: Genetic Blueprint for Stringent Response in Betaproteobacterial Aromatoleum/Azoarcus/Thauera Cluster

description: The Aromatoleum/Azoarcus/Thauera (AAT) cluster comprises anaerobic degradation specialists (Aromatoleum, Thauera) and N2-fixing endophytes (Azoarcus). Omics-based and genetic studies with associated model strains implicate stringent response (SR) in adaptation to nutrient limitation and plant colonization. SR is well-studied in standard bacteria such as E. coli and known as adaptive strategy to nutrient limitations by adjusting e.g. transcription and stress response. SR involves the alarmone (p)ppGpp, whose cellular level is controlled by the synthetases/hydrolases RelA/SpoT and the non-canonical transcription factor DksA, whose interaction with RNA polymerase (RNAP) binding of (p)ppGpp enhances. DksA-mediated SR occurs across Proteobacteria and other phylogenetic groups, mostly applying to pathogens. Furthermore, all three DksA variants (4, 2 or 1 cysteine residue(s) for Zn2+-binding) were found. Genes encoding SR components are present in all studied 37 genomes representing 31 species from the AAT cluster. Each genome encodes a synthezising RelA, a hydrolyzing SpoT, a four cysteine-containing DksA, and mostly also a one cysteine-containing DksA. Opposing functions of RelA and SpoT in Aromatoleum aromaticum EbN1T, Aromatoleum sp. strain CIB, Azoarcus olearius BH72, and Thauera aromatica K172T (entire AAT cluster) are implicated by full conservation of amino acids (E and D vs. 2H2D motive and ED diad) essential for catalysis by their synthetase (SD) versus hydrolase (HD) domains. Likewise, functionality of the predicted C4-type DksAs from these four model strains was visually assessed by structural modeling and comparison of key features (binding sites for Zn2+/(p)ppGpp; CC-tip for RNAP interaction) to those of the available E. coli DksA cryo-EM structure. SR as a global adaptation strategy should contribute to the success of the AAT cluster in its distinct habitats: complex and highly variable soils/sediments (high molecular / microbial diversity, fluctuating nutrient availabilities / redox states) of free-living degradation specialists versus defined endorhizosphere (more stable conditions, less complex community) of the endophytes. A noteworthy exception is Aromatoleum sp. strain CIB by combining degradation and endophytic features. Thus, future investigations into the role of SR in the habitat success of such bacteria reflecting their divergent environmental niches are needed as well as promising.
DOI: 10.6084/m9.figshare.28945079.v1
title: Supplementary Material for: Genetic Blueprint for Stringent Response in Betaproteobacterial Aromatoleum/Azoarcus/Thauera Cluster

description: The Aromatoleum/Azoarcus/Thauera (AAT) cluster comprises anaerobic degradation specialists (Aromatoleum, Thauera) and N2-fixing endophytes (Azoarcus). Omics-based and genetic studies with associated model strains implicate stringent response (SR) in adaptation to nutrient limitation and plant colonization. SR is well-studied in standard bacteria such as E. coli and known as adaptive strategy to nutrient limitations by adjusting e.g. transcription and stress response. SR involves the alarmone (p)ppGpp, whose cellular level is controlled by the synthetases/hydrolases RelA/SpoT and the non-canonical transcription factor DksA, whose interaction with RNA polymerase (RNAP) binding of (p)ppGpp enhances. DksA-mediated SR occurs across Proteobacteria and other phylogenetic groups, mostly applying to pathogens. Furthermore, all three DksA variants (4, 2 or 1 cysteine residue(s) for Zn2+-binding) were found. Genes encoding SR components are present in all studied 37 genomes representing 31 species from the AAT cluster. Each genome encodes a synthezising RelA, a hydrolyzing SpoT, a four cysteine-containing DksA, and mostly also a one cysteine-containing DksA. Opposing functions of RelA and SpoT in Aromatoleum aromaticum EbN1T, Aromatoleum sp. strain CIB, Azoarcus olearius BH72, and Thauera aromatica K172T (entire AAT cluster) are implicated by full conservation of amino acids (E and D vs. 2H2D motive and ED diad) essential for catalysis by their synthetase (SD) versus hydrolase (HD) domains. Likewise, functionality of the predicted C4-type DksAs from these four model strains was visually assessed by structural modeling and comparison of key features (binding sites for Zn2+/(p)ppGpp; CC-tip for RNAP interaction) to those of the available E. coli DksA cryo-EM structure. SR as a global adaptation strategy should contribute to the success of the AAT cluster in its distinct habitats: complex and highly variable soils/sediments (high molecular / microbial diversity, fluctuating nutrient availabilities / redox states) of free-living degradation specialists versus defined endorhizosphere (more stable conditions, less complex community) of the endophytes. A noteworthy exception is Aromatoleum sp. strain CIB by combining degradation and endophytic features. Thus, future investigations into the role of SR in the habitat success of such bacteria reflecting their divergent environmental niches are needed as well as promising.
DOI: 10.15468/dl.3vtb78
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Dendrobium Sw."
 ]
}

 The dataset includes 79 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019614-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28944935
title: Tutorial data for DMC-BrainMap

description: Tutorial dataset for the DMC-BrainMap software.
DOI: 10.15468/dl.2r7se5
title: Occurrence Download

description: A dataset containing 13421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Amara communis (Panzer, 1796)"
 ]
}

 The dataset includes 13421 records from 241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019615-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e243930
title: NNDSS - Table II. Meningococcal disease to Pertussis

description: NNDSS - Table II. Meningococcal disease to Pertussis - 2018. In this Table, provisional cases of selected notifiable diseases (≥1,000 cases reported during the preceding year), and selected low frequency diseases are displayed. The Table includes total number of cases reported in the United States, by region and by states or territory.

Note:

This table contains provisional cases of selected national notifiable diseases from the National Notifiable Diseases Surveillance System (NNDSS). NNDSS data from the 50 states, New York City, the District of Columbia and the U.S. territories are collated and published weekly on the NNDSS Data and Statistics web page (https://wwwn.cdc.gov/nndss/data-and-statistics.html). Cases reported by state health departments to CDC for weekly publication are provisional because of the time needed to complete case follow-up. Therefore, numbers presented in later weeks may reflect changes made to these counts as additional information becomes available. The national surveillance case definitions used to define a case are available on the NNDSS web site at https://wwwn.cdc.gov/nndss/. Information about the weekly provisional data and guides to interpreting data are available at: https://wwwn.cdc.gov/nndss/infectious-tables.html.

Footnotes:

C.N.M.I.: Commonwealth of Northern Mariana Islands.
U: Unavailable. —: No reported cases. N: Not reportable. NA: Not Available. NN: Not Nationally Notifiable. NP: Nationally notifiable but not published. Cum: Cumulative year-to-date counts. Med: Median. Max: Maximum.

* Case counts for reporting years 2017 and 2018 are provisional and subject to change. Data for years 2013 through 2016 are finalized. For further information on interpretation of these data, see http://wwwn.cdc.gov/nndss/document/ProvisionalNationaNotifiableDiseasesSurveillanceData20100927.pdf.
Read less
description: (Downloaded 1/12/2026)
DOI: 10.3886/e243930v1
title: NNDSS - Table II. Meningococcal disease to Pertussis

description: NNDSS - Table II. Meningococcal disease to Pertussis - 2018. In this Table, provisional cases of selected notifiable diseases (≥1,000 cases reported during the preceding year), and selected low frequency diseases are displayed. The Table includes total number of cases reported in the United States, by region and by states or territory.

Note:

This table contains provisional cases of selected national notifiable diseases from the National Notifiable Diseases Surveillance System (NNDSS). NNDSS data from the 50 states, New York City, the District of Columbia and the U.S. territories are collated and published weekly on the NNDSS Data and Statistics web page (https://wwwn.cdc.gov/nndss/data-and-statistics.html). Cases reported by state health departments to CDC for weekly publication are provisional because of the time needed to complete case follow-up. Therefore, numbers presented in later weeks may reflect changes made to these counts as additional information becomes available. The national surveillance case definitions used to define a case are available on the NNDSS web site at https://wwwn.cdc.gov/nndss/. Information about the weekly provisional data and guides to interpreting data are available at: https://wwwn.cdc.gov/nndss/infectious-tables.html.

Footnotes:

C.N.M.I.: Commonwealth of Northern Mariana Islands.
U: Unavailable. —: No reported cases. N: Not reportable. NA: Not Available. NN: Not Nationally Notifiable. NP: Nationally notifiable but not published. Cum: Cumulative year-to-date counts. Med: Median. Max: Maximum.

* Case counts for reporting years 2017 and 2018 are provisional and subject to change. Data for years 2013 through 2016 are finalized. For further information on interpretation of these data, see http://wwwn.cdc.gov/nndss/document/ProvisionalNationaNotifiableDiseasesSurveillanceData20100927.pdf.
Read less
description: (Downloaded 1/12/2026)
DOI: 10.15468/dl.vay9rm
title: Occurrence Download

description: A dataset containing 29691 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is University of Amsterdam (NL) – Benthos monitoring of the North Sea research database"
 ]
}

 The dataset includes 29691 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071730-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntxrxz
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidostemon caudatus Rohwer"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026696-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fzkmuc
title: Occurrence Download

description: A dataset containing 6340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Leopardus pardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 6340 records from 226 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0263958-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.equngd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus acanthocarpus Boriss."
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071581-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esfnjn
title: Occurrence Download

description: A dataset containing 470 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sri Lanka",
 "TaxonKey is Elephas maximus Linnaeus, 1758"
 ]
}

 The dataset includes 470 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003866-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy596u
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aruncus parvulus Kom."
 ]
}

 The dataset includes 15 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026795-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvvta0
title: Occurrence Download

description: A dataset containing 404690957 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 404690957 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000283-171020152545675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpxgmh
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Macronycteris thomensis (Bocage, 1891))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071568-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3zzh2
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidostemon conoideus van der Werff"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026703-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64bs79
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus absentivus Maassoumi"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071571-230224095556074/datasets/export for details.
DOI: 10.15468/dl.xjit4x
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025539-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.