cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7646141
title: Enrich4All-RoCOVID-Open

description: The COVID corpus in Romanian collects Romanian documents about the COVID pandemics, about the COVID disease and its diverse aspects that it entails, including medical, sociological and logistical. It was intended to foster the development of an intelligent chatbot, answering Romanian questions about COVID, in the Enrich4All project. It contains two parts: one that can be released publicly (Enrich4All-RoCOVID-Open) and one that contains copyrighted material (Enrich4All-RoCOVID-Restricted). The archive contains a readme file and the publicly released documents: 82 (.txt, UTF-8) files together with their associated metadata files (.xml). <strong>Example of a metadata file:</strong> <em>&lt;Metadata&gt;<br> &lt;DocumentTitle&gt;Sinteză: Regimul carantinei și condițiile pentru intrarea în România&lt;/DocumentTitle&gt;<br> &lt;PublicationDate&gt;2020&lt;/PublicationDate&gt;<br> &lt;SourceName&gt;Code for Romania&lt;/SourceName&gt;<br> &lt;SourceURL&gt;https://covid19.stirioficiale.ro/sinteza-regimul-carantinei-si-conditiile-pentru-intrarea-in-romania&lt;/SourceURL&gt;<br> &lt;DocumentTextStyle&gt;Law&lt;/DocumentTextStyle&gt;<br> &lt;DocumentTextDomain&gt;covid19&lt;/DocumentTextDomain&gt;<br> &lt;SubjectLanguage&gt;Romanian&lt;/SubjectLanguage&gt;<br> &lt;CollectionDate&gt;2021&lt;/CollectionDate&gt;<br> &lt;AccessRight&gt;Open Access&lt;/AccessRight&gt;<br> &lt;No_of_words&gt;3073&lt;/No_of_words&gt;<br> &lt;/Metadata&gt;</em> <strong>When using our dataset, please cite the following paper</strong>: Ion, Radu, Andrei-Marius Avram, Vasile Păiş, Maria Mitrofan, Verginica Barbu Mititelu, Elena Irimia, and Valentin Badea. "An Open-Domain QA System for e-Governance." <em>arXiv preprint arXiv:2206.08046</em> (2022). <strong>Person of contact</strong>: Radu Ion, radu@racai.ro
description: {"references": ["Ion, Radu, Andrei-Marius Avram, Vasile P\u0103i\u015f, Maria Mitrofan, Verginica Barbu Mititelu, Elena Irimia, and Valentin Badea. \"An Open-Domain QA System for e-Governance.\" arXiv preprint arXiv:2206.08046 (2022)."]}
DOI: 10.5281/zenodo.6415069
title: BoNT-A efficacy in high frequency migraine: an open label, single arm, exploratory study applying the PREEMPT paradigm

description: The database is related to the article “BoNT-A efficacy in high frequency migraine: an open label, single arm, exploratory study applying the PREEMPT paradigm”. In this database we reported all the clinical and anamnestic data of the patients who completed the trial (e.g. 32 high-frequency episodic migraine subjects and 28 of them completed the trial). After a 28-day baseline period, subjects underwent 4 subsequent onabotulinum toxin-A treatments according to the phase III research evaluating migraine prophylaxis therapy (PREEMPT) paradigm, 12-weeks apart. Onabotulinum toxin-A reduced monthly migraine days by 3.68 days. Thirty-nine percent of the patients experienced a ≥50% reduction in monthly migraine days. Onabotulinum toxin-A also reduced the number of headache days and the intake of acute medications. Disability and quality of life (QoL) scores improved markedly.
description: Funding: This work was a self-initiated study promoted by IRCCS Mondino Foundation with a partial support from Allergan – AbbVie
DOI: 10.5281/zenodo.6415068
title: BoNT-A efficacy in high frequency migraine: an open label, single arm, exploratory study applying the PREEMPT paradigm

description: The database is related to the article “BoNT-A efficacy in high frequency migraine: an open label, single arm, exploratory study applying the PREEMPT paradigm”. In this database we reported all the clinical and anamnestic data of the patients who completed the trial (e.g. 32 high-frequency episodic migraine subjects and 28 of them completed the trial). After a 28-day baseline period, subjects underwent 4 subsequent onabotulinum toxin-A treatments according to the phase III research evaluating migraine prophylaxis therapy (PREEMPT) paradigm, 12-weeks apart. Onabotulinum toxin-A reduced monthly migraine days by 3.68 days. Thirty-nine percent of the patients experienced a ≥50% reduction in monthly migraine days. Onabotulinum toxin-A also reduced the number of headache days and the intake of acute medications. Disability and quality of life (QoL) scores improved markedly.
description: Funding: This work was a self-initiated study promoted by IRCCS Mondino Foundation with a partial support from Allergan – AbbVie
DOI: 10.58073/sruc.21946928
title: Description of data collected about the Scottish deer sector

description: These data are being gathered by questionnaire survey online, sent to deer keepers around Scotland. We are focusing on "managed" deer - meaning humans have influence over their range for at least part of the year. We are asking questions about recording of births, deaths, sales and purchases; we also ask how records are made and kept, when this happens. The dataset contains responses to these questions and may also contain personal email addresses; we have asked for these to be given, optionally, if respondents want to get involved in further discussion of this topic later in the project. We also request some location information - first half of postcode where deer premises is registered.
DOI: 10.58073/sruc.21408495
title: metagenomics of mixed cultures mapping to K4

description: metagenomics of mixed cultures mapping to K4
DOI: 10.18430/m38g0r
title: X-ray diffraction data for the crystal Structure of Acetyl-CoA synthetase in complex with a cyclopentyl ester AMP inhibitor from Cryptococcus neoformans H99 (8G0R)
DOI: 10.18430/m38g0s
title: X-ray diffraction data for the crystal Structure of Acetyl-CoA synthetase in complex with a cyclopentyl ester AMP inhibitor from Cryptococcus neoformans H99 (tetragonal form) (8G0S)
DOI: 10.18430/m38g0t
title: X-ray diffraction data for the crystal Structure of Acetyl-CoA synthetase in complex with a cyclopropyl ester AMP inhibitor from Cryptococcus neoformans H99 (8G0T)
DOI: 10.18430/m38g0u
title: X-ray diffraction data for the crystal Structure of Acetyl-CoA synthetase in complex with an isopropyl ester AMP inhibitor from Cryptococcus neoformans H99 (8G0U)
DOI: 10.18430/m38g0v
title: X-ray diffraction data for the crystal Structure of Acetyl-CoA synthetase in complex with a propyne ester AMP inhibitor from Cryptococcus neoformans H99 (8G0V)
DOI: 10.6084/m9.figshare.21787262
title: Input Dataset for R code

description: Input dataset for R code (first sheet), and BOLD spreadsheet downloaded on April 11, 2022 (next sheets) for "Facing the Infinity".
DOI: 10.6084/m9.figshare.21787262.v2
title: Input Dataset for R code

description: Input dataset for R code (first sheet), and BOLD spreadsheet downloaded on April 11, 2022 (next sheets) for "Facing the Infinity".
DOI: 10.6084/m9.figshare.21787262.v1
title: Input Dataset for R code (and BOLD Data)

description: Input dataset for R code (first sheet), and BOLD spreadsheet downloaded on April 11, 2022 (next sheets) for "Facing the Infinity".
DOI: 10.17632/bdbjzxpzg4.1
title: The effect of systemic therapies on hemogram parameters and C-reactive protein in patients with psoriatic arthritis

description: Background: Some inflammatory parameters were evaluated and found to be higher in psoriatic arthritis (PsA) patients compared to controls. The aim of this study is to investigate the changes in  hemogram parameters and C-reactive protein (CRP) in PsA patients receiving systemic therapies.
Methods: In this retrospective study,  hemogram parameters, CRP and systemic inflammation indices [neutrophil-to-lymphocyte ratio (NLR), platelet-to-lymphocyte ratio, systemic immune-inflammation index (SII), and systemic inflammation response index (SIRI)] of 50 PsA patients were analyzed before and in the third month of the treatments.
Results: Mean corpuscular hemoglobin (MCH), mean corpuscular hemoglobin concentration (MCHC), and hemoglobin (Hb) were higher in the third month of all treatments compared to the baseline (p=0.009, 0.003, and 0.036, respectively). Platelet, CRP and SII were lower (p= 0.001, 0.000, and 0.000, respectively). In the biological therapy group (n=21), platelet, SIRI, and SII were lower, while MCHC was higher in the third month than baseline (p= 0.023, 0.033, 0.000, and 0.003, respectively). CRP and SII were lower in the third month of the non-biologic treatment group (n=29) compared to the baseline, and MCH and mean corpuscular volume (MCV) were higher (p= 0.001, 0.000, 0.027, and 0.044, respectively). No statistically different changes were recorded in NLR, PLR, and other parameters.
Conclusion:  Hb, MCH, and MCHC  increased and platelet, CRP, and SII decreased with all systemic therapies. MCV was higher in the non-biologic treatment group, and SIRI was lower in the biological treatment group. Therefore, these parameters may be useful for monitoring the effects of treatments in PsA.
DOI: 10.5066/p9gkiplh
title: Geodatabase of oil and gas pads and roads within the Bureau of Land Management's Carlsbad Field Office administrative boundary, New Mexico

description: This database contains spatial data on the location, number, size and extent of energy-related surface disturbances within the Bureau of Land Management?s (BLM) Carlsbad Field Office (CFO) administrative area. The BLM administers over 2 million acres of surface estate and 3 million acres of mineral estate in the southeastern portion of New Mexico. The BLM requires a thorough and comprehensive reasonable foreseeable development (RFD) scenario which quantifies the current and future potential of oil and gas resources and the necessary water use associated with those activities. The database includes: 1) polygons of oil and gas pads generated from automated and manual classification of aerial imagery, 2) polylines of roads derived from the U.S. Census Bureau (2020) TIGER/Line Shapefile, supplemented with additional oil and gas access roads digitized from aerial imagery, 3) point locations of active and abandoned oil and gas wells in the CFO area accessed from NM Oil Conservation Division (OCD) geodata portal, and 4) a set of relationship classes that link the pad polygons to the well points (and all associated well attributes) based on unique identifiers. Pad polygons and road segments are attributed with a "spud year" date based on spud information from the nearest well point. Spudding is the process of beginning to drill a well in the oil and gas industry, and the spud year is a close approximation of when the access roads and pads were cleared for development. The spud year information can be used to develop a chronology of oil and gas surface disturbances across the study region.
DOI: 10.6084/m9.figshare.22110623
title: Matrix of Specimens

description: Abundance data for specimens from samples.
DOI: 10.5281/zenodo.7372733
title: Dataset belonging to the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper"

description: This repository contains the raw data of the experimental (S)TEM imaging and the data corresponding to the simulations and theoretical calculations of the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper",. A pre-print version of the paper is available on arXiv: http://doi.org/10.48550/arXiv.2212.01180 See the file README.md for a detailed description.
DOI: 10.5281/zenodo.7372732
title: Dataset belonging to the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper"

description: This repository contains the raw data of the experimental (S)TEM imaging and the data corresponding to the simulations and theoretical calculations of the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper",. A pre-print version of the paper is available on arXiv: http://doi.org/10.48550/arXiv.2212.01180 See the file README.md for a detailed description.
DOI: 10.5281/zenodo.7646180
title: Dataset belonging to the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper"

description: This repository contains the raw data of the experimental (S)TEM imaging and the data corresponding to the simulations and theoretical calculations of the paper "Atomic resolution observations of silver segregation in a [111] tilt grain boundary in copper",. A pre-print version of the paper is available on arXiv: http://doi.org/10.48550/arXiv.2212.01180 See the file README.md for a detailed description.
DOI: 10.17632/kktj9dhbtc.1
title: Table I. Comparison of portable sunscreen dispensers available for online purchase (February 2022)

description: Comparison of portable sunscreen dispensers available for online purchase (February 2022)
DOI: 10.5281/zenodo.7374166
title: Supplementary material for Metabolic constraints on the body size scaling of extreme population densities

description: Data for the analysis of the paper entitled Metabolic constraints on the body size scaling of extreme population densities. Ecology letters. air_sea_outputs_L4_nsw.txt This data set contains 8693 rows and 13 variables From colum 1 to 13 the following names apply: Julian- Day of the year (1rst January =1) day- Day number month- Month number year- Year number lat- Latitude lon- Longitude wind_speed_m_s- 1m wind speed in meters per second presure_mB- Air pressure in milibars Temp_°C- Air temperature in degrees Celsius Temp_algo- Other temperature Cloud_cover%- Percentage of cloud cover SST_°C- sea surface temperature in degree Celsius SW_Radiation_W_m2- Short wave radiation in Watts per square meter. SurfaceTemperature_L4_Merged.csv This data set has 1064 rows and two columns Fechas_tempAll is the date of measurement formated as (Year-Month-Day Hour) e.g. 2013-05-20 09:00:00 TEMP_EC- Surface water Temperature in degree Celsius Nutrients.csv The data set sas 445 rows and 8 Variables Sample.Date- Date when surface water sample was taken. NITRITE.µM, - Nitrite (NO2) concentration in micromolar NITRATE.NITRITE.µM"- Nitrate (NO3) concentration in micromolar AMMONIA.µM, - Ammonia (NH4) concentration in micromolar SILICATE.µM, - Silica (Si) concentration in micromolar PHOSPHATE.µM- - Posphate (PO4) concentration in micromolar<br> FLAG- Quality flag (TRUE/FALSE).
DOI: 10.5281/zenodo.7374165
title: Supplementary material for Metabolic constraints on the body size scaling of extreme population densities

description: Data for the analysis of the paper entitled Metabolic constraints on the body size scaling of extreme population densities. Ecology letters. air_sea_outputs_L4_nsw.txt This data set contains 8693 rows and 13 variables From colum 1 to 13 the following names apply: Julian- Day of the year (1rst January =1) day- Day number month- Month number year- Year number lat- Latitude lon- Longitude wind_speed_m_s- 1m wind speed in meters per second presure_mB- Air pressure in milibars Temp_°C- Air temperature in degrees Celsius Temp_algo- Other temperature Cloud_cover%- Percentage of cloud cover SST_°C- sea surface temperature in degree Celsius SW_Radiation_W_m2- Short wave radiation in Watts per square meter. SurfaceTemperature_L4_Merged.csv This data set has 1064 rows and two columns Fechas_tempAll is the date of measurement formated as (Year-Month-Day Hour) e.g. 2013-05-20 09:00:00 TEMP_EC- Surface water Temperature in degree Celsius Nutrients.csv The data set sas 445 rows and 8 Variables Sample.Date- Date when surface water sample was taken. NITRITE.µM, - Nitrite (NO2) concentration in micromolar NITRATE.NITRITE.µM"- Nitrate (NO3) concentration in micromolar AMMONIA.µM, - Ammonia (NH4) concentration in micromolar SILICATE.µM, - Silica (Si) concentration in micromolar PHOSPHATE.µM- - Posphate (PO4) concentration in micromolar<br> FLAG- Quality flag (TRUE/FALSE).
DOI: 10.5281/zenodo.7646874
title: Foresail-2 Orbital Lifetime Analysis

description: The dataset has been created with the following inputs for DRAMAs CROC. Inputs for DRAMA Outputs for DRAMA Orbital elements CROC Inclination 15 ° F3. Randomly tumbling satellite RAAN 0 ° Average cross section for 6U 0.170 m^2 Argument of perigee 0 ° Minimum Cross Section 0.028 m^2 Drag coefficient 2.2 N/A Maximum Cross Section 0.268 m^2 SRP coefficient 1.3 N/A Orbit Predigtion Update 08.02.2023 6U CubeSat with 2 folding panel + boom Dry mass 14 kg Main body dimensions 0.11x0.34x0.25 m^3 Solar Panel X+ 0.007x0.34x0.25 m^3 Solar Panel X- 0.007x0.34x0.25 m^3 Extended boom dimensions 0.07x0.68x0.01 m^3 Magnetometer dimensions 0.05x0.05x0.05 m^3 OSCAR simulations have been conducted with orbits with apogee varying from 15000 km to 65000 km in 5000 km steps.<br> The perigee has been varied for every apogee height from 250 km to 400 km in 50 km steps.<br> Every simulation has been done for 4 different launch dates: 21.03.2025 12:00:00 Spring 21.06.2025 12:00:00 Summer 21.09.2025 12:00:00 Autumn 21.12.2025 12:00:00 Winter If not specified otherwise all settings in DRAMA have been kept to the default values.
DOI: 10.6084/m9.figshare.22110662
title: Kelsch RH and Hypoxia

description: Data set for Kelsch manuscript on reactive hyperemia and acute vs sustained concomitant hypoxia. Collection included VOP measures of blood flow and heart rate.
DOI: 10.6084/m9.figshare.22110662.v1
title: Kelsch RH and Hypoxia

description: Data set for Kelsch manuscript on reactive hyperemia and acute vs sustained concomitant hypoxia. Collection included VOP measures of blood flow and heart rate.
DOI: 10.18120/3n35-2a32
title: BI imaging
DOI: 10.5281/zenodo.7569006
title: New database of fragments of medieval codices of the 11th-12th centuries

description: The database currently has 117 codex fragments with the number of samples between 11 and 39, with an average of 17, which gives 2040 writing samples. The resolution of the width of the manuscripts varies between two thousand pixels and almost nine thousand pixels.
DOI: 10.5281/zenodo.7569005
title: New database of fragments of medieval codices of the 11th-12th centuries

description: The database currently has 117 codex fragments with the number of samples between 11 and 39, with an average of 17, which gives 2040 writing samples. The resolution of the width of the manuscripts varies between two thousand pixels and almost nine thousand pixels.
DOI: 10.17877/de290r-23085
title: Database of experimental results from punching shear tests with various types of reinforcement
title: Datenbank von Versuchsergebnissen aus Durchstanzversuchen mit diversen Bewehrungsarten

description: Direct slabs-column connections are a typical structural confgiuration because they allow greater clear heights and more versatile architectural layouts compared to beam frame support. In such structures, punching shear failure is often critical. Punching shear is characteristically brittle and it occurs without pronounced advance notice, whilst robustness through alternative load paths can not always be ensured. Hence progressive catastrophic collapses can occur and advanced design and existing structures assessment models are necessary. This dataset is a collection of available full-scale punching shear test results from international literature of the last 6 decades offered to researchers for metanalyses and comparisons with own research results. This also forms the basis of the publication: Mellios, N., Uz, O., & Spyridis, P. (2023). Data-based modeling of the punching shear capacity of concrete structures. Engineering Structures, 275, 115195.
DOI: 10.7284/128149
title: Singlebeam Echosounder data collected during research cruise SKQ201713S using a L3ELAC LAZ 5100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132146
title: Water Temperature data collected during research cruise SKQ201713S using a SeaBird SBE-38 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.22110695
title: Supplementary information files for Quantum-corrected thickness-dependent thermal conductivity in amorphous silicon predicted by machine learning molecular dynamics simulations

description: Supplementary files for article Quantum-corrected thickness-dependent thermal conductivity in amorphous silicon redicted by machine learning molecular dynamics simulations <br> Amorphous silicon (a-Si) is an important thermal-management material and also serves as an ideal playground for studying heat transport in strongly disordered materials. Theoretical prediction of the thermal conductivity of a-Si in a wide range of temperatures and sample sizes is still a challenge. Herein we present a systematic investigation of the thermal transport properties of a-Si by employing large-scale molecular dynamics (MD) simulations with an accurate and efficient machine learned neuroevolution potential (NEP) trained against abundant reference data calculated at the quantum-mechanical density-functional-theory level. The high efficiency of NEP allows us to study the effects of finite size and quenching rate in the formation of a-Si in great detail. We find that a simulation cell up to 64000 atoms (a cubic cell with a linear size of 11 nm) and a quenching rate down to 1011 K s−1 are required for almost convergent thermal conductivity. Structural properties, including short- and medium-range order as characterized by the pair-correlation function, angular-distribution function, coordination number, ring statistics, and structure factor are studied to demonstrate the accuracy of NEP and to further evaluate the role of quenching rate. Using both the heterogeneous and homogeneous nonequilibrium MD methods and the related spectral decomposition techniques, we calculate the temperature- and thickness-dependent thermal conductivity values of a-Si and show that they agree well with available experimental results from 10 K to room temperature. Our results also highlight the importance of quantum effects in the calculated thermal conductivity and support the quantum-correction method based on the spectral thermal conductivity.
DOI: 10.6084/m9.figshare.22109414
title: Single-cell gene set enrichment analysis and transfer learning for functional annotation of scRNA-seq data

description: Although an essential step, the functional annotation of cells often proves particularly challenging in the analysis of single-cell transcriptional data. Several methods have been developed to accomplish this task. However, in most cases, these rely on techniques initially developed for bulk RNA sequencing or simply make use of marker genes identified from cell clustering followed by supervised annotation. To overcome these limitations and automatise the process, we have developed two novel methods, the single-cell gene set enrichment analysis (scGSEA) and the single cell mapper (scMAP). scGSEA combines latent data representations and gene set enrichment scores to detect coordinated gene activity at single-cell resolution. scMAP uses transfer learning techniques to repurpose and contextualise new cells into a reference cell atlas. Using both simulated and real datasets, we show that scGSEA effectively recapitulates recurrent patterns of pathways’ activity shared by cells from different experimental conditions. At the same time, we show that scMAP can reliably map and contextualise new single cell profiles on a breast cancer atlas we recently released. Both tools are provided in an effective and straightforward workflow providing a framework to determine cell function and significantly improve annotation and interpretation of scRNA-seq data.