cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25914/8ytm-bn46
title: Magnetotelluric surveys of the North Flinders Ranges, South Australia as part of the Australian Lithospheric Architecture Magnetotelluric Project (AusLAMP)
DOI: 10.25914/k3jh-df90
title: Magnetotelluric surveys of the Flinders Ranges, South Australia as part of the Australian Lithospheric Architecture Magnetotelluric Project (AusLAMP) (packed raw time series archive)
DOI: 10.25914/pj9d-0w45
title: Magnetotelluric surveys of the North Flinders Ranges, South Australia as part of the Australian Lithospheric Architecture Magnetotelluric Project (AusLAMP) (packed raw time series archive)
DOI: 10.25345/c5c53fb52
title: MassIVE MSV000092291 - Mesotrione metabolism in Amaranthus palmeri and Amaranthus tuberculatus (LCMS negative mode)
title: Metabolism of the 4-hydroxyphenylpyruvate dioxygenase-inhibiting herbicide mesotrione in Amaranthus palmeri and Amaranthus tuberculatus populations (LCMS negative mode)
DOI: 10.5281/zenodo.8088172
title: Ha-SingleMoleculeLab's data for publication: Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level

description: This upload is the raw data that support our findings sent to review on Nucleic Acids Research, corresponding to each individual figure. The paper title is " Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level".
description: This upload is the raw data that support our findings sent to review on Nucleic Acids Research, corresponding to each individual figure.
description: {"references": ["https://doi.org/10.1101/2023.03.08.531827"]}
DOI: 10.5281/zenodo.8088171
title: Ha-SingleMoleculeLab's data for publication: Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level

description: This upload is the raw data that support our findings sent to review on Nucleic Acids Research, corresponding to each individual figure. The paper title is " Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level".
description: This upload is the raw data that support our findings sent to review on Nucleic Acids Research, corresponding to each individual figure.
description: {"references": ["https://doi.org/10.1101/2023.03.08.531827"]}
DOI: 10.6084/m9.figshare.21747095
title: Establishment and characterization of an Epstein-Barr virus-positive cell line from a non-keratinizing differentiated primary nasopharyngeal carcinoma

description: Supplementary Dataset 1 - List of filtered SNPs in NPC268 tumor and cell line. <br> Supplementary Dataset 2 - JSON file containing the interactive dataset of the 125 compounds lnIC50 in 7 NPC cell lines, to be loaded and view as heatmap on Morpheus (Broad Institute) (https://software.broadinstitute.org/morpheus/) <br> Supplementary Dataset 3 - NPC268 and other NP/NPC lines' RNA-seq data Combat corrected IRAP RNA-seq - log2FPKM QN - 8 NP and NPC lines <br> Others: <strong>NPC268 WGS data - VCF files for unfiltered SNPs</strong> NPC268_Cell_line.GATK.snp.vcf NPC268_Tumor.GATK.snp.vcf <br> <strong>NPC268 WGS data - VCF files mapped to EBV genome</strong> NPC268_GATK_haploid_BQSR_SNPsINDELs_filtered_selected_nonmask.vcf <br> <br> <strong>NPC268 WGBS data </strong> NPC268.bigwig <br> <br>
DOI: 10.6084/m9.figshare.21747095.v3
title: Establishment and characterization of an Epstein-Barr virus-positive cell line from a non-keratinizing differentiated primary nasopharyngeal carcinoma

description: Supplementary Dataset 1 - List of filtered SNPs in NPC268 tumor and cell line. <br> Supplementary Dataset 2 - JSON file containing the interactive dataset of the 125 compounds lnIC50 in 7 NPC cell lines, to be loaded and view as heatmap on Morpheus (Broad Institute) (https://software.broadinstitute.org/morpheus/) <br> <strong>NPC268 WGS data - VCF files for unfiltered SNPs</strong> NPC268_Cell_line.GATK.snp.vcf NPC268_Tumor.GATK.snp.vcf <br> <strong>NPC268 WGS data - VCF files mapped to EBV genome</strong> NPC268_GATK_haploid_BQSR_SNPsINDELs_filtered_selected_nonmask.vcf <br> <br> <strong>NPC268 WGBS data </strong> NPC268.bigwig <br> <strong>NPC268 and other NP/NPC lines' RNA-seq data</strong> Combat corrected IRAP RNA-seq - log2FPKM QN - 8 NP and NPC lines <br> <br>
DOI: 10.6084/m9.figshare.14612295
title: SNAP datasets

description: Three years of soil core data collected from the SNAP experiment in coastal North Carolina. Data accompanying the manuscript titled "Restored forested wetland surprisingly resistant to experimental salinization." The data files include: <br> Soil analysis data from the North Carolina Division of Agriculture and Consumer sciences.<br> <br> Tree identification and diameter at breast height measurements collected from the SNAP experiment in coastal North Carolina between 2015 and 2021.<br> <br>
DOI: 10.6084/m9.figshare.14612295.v1
title: SNAP datasets

description: Three years of soil core data collected from the SNAP experiment in coastal North Carolina. Data accompanying the manuscript titled "Restored forested wetland surprisingly resistant to experimental salinization." The data files include: <br> Soil analysis data from the North Carolina Division of Agriculture and Consumer sciences.<br> <br> Tree identification and diameter at breast height measurements collected from the SNAP experiment in coastal North Carolina between 2015 and 2021.<br> <br>
DOI: 10.34740/kaggle/dsv/6040144
title: ⚔ Dota 2 Pro League Matches 2018-2023 ⛨
DOI: 10.6084/m9.figshare.23589468
title: MTT - VIABILITY ASSAY

description: Cell viability assay of tumor cells after treatment with iodinated contrast agents
DOI: 10.6084/m9.figshare.23589468.v1
title: MTT - VIABILITY ASSAY

description: Cell viability assay of tumor cells after treatment with iodinated contrast agents
DOI: 10.6084/m9.figshare.23590083
title: Stochastic Simulation of Divergent Selection Experiment on a Gene-Phenotype Network: A Case Study of Shoot Branching in Plants

description: # Stochastic Simulation of Divergent Selection Experiment on a Gene-Phenotype Network: A Case Study of Shoot Branching in Plants <br> ## Background <br> General Background Information on the specification of the Gene-Phenotype Network for Shoot Branching can be found in this publication: https://doi.org/10.1093/insilicoplants/diac006 <br> The Shoot Branching Gene-Phenotype Network generates values for intermediate traits (`Auxin`,`Strigolactone`,`Cytokinin`,`Sucrose` & the `Integrator Signal`) and the end-point trait, `Time Bud Outgrowth`, that was under direct selection in the simuations. Starting from a common segregating population of genotypes (F2 - cycle1 folders), individuals were selected for either `Faster` or `Slower` Time to Bud Outgrowth for 30 selection cycles which created two seperate selection lines. <br> The heritability, the ratio of genetic variance to error variance, of the `Time Bud Outgrowth` trait under direct selection was varied (`H2 = 1.0, 0.7, 0.5, 0.3`) to assess implications of the accuracy of selection decisison on the seleciton trajectories of the gene-phenotype network. <br> The whole divergent selection experiments were replicated 5 times, resulting in 1,200 populations with genotype and phenotype data. <br> ### Data <br> ##### Genotype <br> *TrueQtlInfo.csv* <br> Information on Causal Genomic Sites (Quantitative Trait Loci - QTL) & their Effect Sizes on Gene-Phenotype Network; - Column 1: Intermediate Trait Infuenced by each QTL - Column 2: QTL Order - Column 3: Effect Size of each QTL - Column 4: Location Information of each QTL (ChromosomeNumber_WithinChromosomeIndex) <br> *QtlMatrix.csv* <br> Information on Number of Gene Copies (Alleles) at each QTL for each individual - 1st Column: Individual ID - 2nd Column Onnwards: QTL Allele Counts <br> *SnpMatrix.csv* <br> Information on Number of Gene Copies (Alleles) at each SNP (Non-Causal Genomic Sites) for each individual - 1st Column: Individual ID - 2nd Column Onnwards: SNP Allele Counts <br> ##### Phenotype <br> *TraitData.csv* <br> Trait Records for each individual - Column 1: Individual ID - Column 2: Selection Direction on Time to Bud Outhgrowth - Column 3-6: Additive Genetic Values (Sum of QTL Allele Counts x QTL Effect Size) for Intermediate Traits - Column 7-11: Total Genetic Values (Sum of Additive Genetic Values + Interaction Effects) for Intermediate Traits - Column 12: Total Genetic Values for Time to Bud Outgrowth - Column 13: Phenotypes (Total Genetic Values + Error) for Time to Bud Outgrowth <br>
DOI: 10.5517/ccdc.csd.cc2gfsrg
title: CCDC 2277376: Experimental Crystal Structure Determination

description: Related Article: Zheng Meng|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/6042416
title: ⚔ Dota 2 Pro League Matches 2018-2023 ⛨
DOI: 10.6084/m9.figshare.23573514.v2
title: <em><strong>Niphotrichum japonicum </strong></em><strong>genome project</strong>

description: The dataset contains the genome, CDS and PEP of <em>Niphotrichum japonicum</em>.
DOI: 10.34740/kaggle/dsv/6042535
title: Pypi sython panda
DOI: 10.6084/m9.figshare.23590155
title: YZR_data

description: The folder contains the streamflow anomaly data at seven major hydrostations along the Yarlung Zangbo River (YZR), China. The seven stations are (from upstream to downstream): Lazi, Nugesha, Rikaze, Lhasa, Yangcun, Gengzhang, and Nuxia. The recorded attributes include: year, month, day, streamflow anomaly (i.e., daily flow rates minus multi-year average at corresponding stations).
DOI: 10.6084/m9.figshare.23590107
title: De novo assembly of Melilotus officinalis

description: This study reports a high-quality de novo assembly for Melilotus officinalis obtained at the chromosomal level using PacBio third-generation Hi-Fi sequencing. The generated high-quality genome assembly of Melilotus officinalis provides a key basis for accelerating the research and molecular breeding of this important forage crop. The genome is also valuable for future studies on legume forage biology, evolution, and genome-wide mapping of quantitative trait loci associated with the relevant agronomic traits.
DOI: 10.6084/m9.figshare.23590278
title: self-made OMCD dataset

description: This dataset includes two GaoFen-2 satellite images of the Shengli No. 1 open-pit mine and Shengli West No. 3 open-pit mine in Xilinhot, Inner Mongolia Autonomous Region, China, on 24 March 2015 and 20 March 2020, with significant changes due to mining activities in both phases of the images. The spatial resolution of the images is 1 m. The images were cropped to 512×512 pixels for a total of 52 image pairs.
DOI: 10.6084/m9.figshare.23590161
title: Melilotus officinalis genome annotation

description: This study reports a high-quality de novo assembly for Melilotus officinalis obtained at the chromosomal level using PacBio third-generation Hi-Fi sequencing. The generated high-quality genome assembly of Melilotus officinalis provides a key basis for accelerating the research and molecular breeding of this important forage crop. The genome is also valuable for future studies on legume forage biology, evolution, and genome-wide mapping of quantitative trait loci associated with the relevant agronomic traits.
DOI: 10.5281/zenodo.8083481
title: China Cement Industry Dataset (CCID)

description: 1. "China cement plants.xlsx" displays the company, clinker production lines, province, address, kiln size, clinker production capacity, and year of operation of cement plants in China. 2. "Energy statistics for China cement plants.xlsx" displays the energy statistics of thermal and electricity consumption of part of cement plants, reported by official departments.
DOI: 10.5281/zenodo.7939441
title: China Cement Industry Dataset (CCID)

description: 1. "China cement plants.xlsx" displays the company, clinker production lines, province, address, kiln size, clinker production capacity, and year of operation of cement plants in China. 2. "Energy statistics for China cement plants.xlsx" displays the energy statistics of thermal and electricity consumption of part of cement plants, reported by official departments.
DOI: 10.5281/zenodo.8088548
title: Longitudinal Assessment of TCR Repertoires in Recipients of Inactivated SARS-CoV-2 Vaccines: An Artificial Intelligence-Guided Study

description: T cells play a crucial role in mitigating disease severity during SARS-CoV-2 infection and in shaping long-term immune memory. However, the precise molecular immune response involving T-cell receptor (TCR) repertoire changes following full vaccination, and evaluating vaccine efficacy through TCR analysis, remains incompletely understood. In this study, we conducted a 10-month longitudinal investigation of individuals who received SARS-CoV-2 inactivated vaccines and developed a vaccine efficacy evaluation model. Through the advanced large language artificial intelligence method, we identified vaccine-specific TCR clones, 3 V genes, 20 V-J combinations, and 3 epitopes, and traced their longitudinal development. The vaccine-specific TCR clones expanded to peak levels after the second vaccine dose and remained detectable in most subjects at 10 months. Utilizing vaccine-specific TCRs as novel markers, we constructed a vaccine efficacy evaluation model that predicts antibody levels with a mean AUC of 0.96, highlighting the relationship between vaccine-specific TCRs and antibodies. Our findings reveal the longitudinal patterns of vaccine-specific TCR clones and the potential of the efficacy evaluation model built upon them.
DOI: 10.5281/zenodo.8088547
title: Longitudinal Assessment of TCR Repertoires in Recipients of Inactivated SARS-CoV-2 Vaccines: An Artificial Intelligence-Guided Study

description: T cells play a crucial role in mitigating disease severity during SARS-CoV-2 infection and in shaping long-term immune memory. However, the precise molecular immune response involving T-cell receptor (TCR) repertoire changes following full vaccination, and evaluating vaccine efficacy through TCR analysis, remains incompletely understood. In this study, we conducted a 10-month longitudinal investigation of individuals who received SARS-CoV-2 inactivated vaccines and developed a vaccine efficacy evaluation model. Through the advanced large language artificial intelligence method, we identified vaccine-specific TCR clones, 3 V genes, 20 V-J combinations, and 3 epitopes, and traced their longitudinal development. The vaccine-specific TCR clones expanded to peak levels after the second vaccine dose and remained detectable in most subjects at 10 months. Utilizing vaccine-specific TCRs as novel markers, we constructed a vaccine efficacy evaluation model that predicts antibody levels with a mean AUC of 0.96, highlighting the relationship between vaccine-specific TCRs and antibodies. Our findings reveal the longitudinal patterns of vaccine-specific TCR clones and the potential of the efficacy evaluation model built upon them.
DOI: 10.15468/dl.rb2tjr
title: Occurrence Download

description: A dataset containing 271219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.82261 27.22288,2.87779 18.91458,5.53697 18.41071,12.55721 23.18192,10.85533 26.17763,10.11076 31.93837,8.72799 33.81419,9.00603 37.76737,1.17337 37.11846,-2.32074 35.69464,-2.17336 33.08018,-4.38406 31.39739,-8.80546 29.10608,-8.82261 27.22288))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 271219 records from 621 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049283-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-63278
title: Redemption tidings, vol. 43, nos. 1-52, 6 Jan. - 28 Dec. 1967

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle for vol. 43, nos. 1-39 (6 Jan. - 29 Sept. 1967).
DOI: 10.15468/dl.sekahg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vireo pallens ochraceus"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002345-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x84vcy
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Todiramphus funebris Bonaparte, 1850"
 ]
}

 The dataset includes 461 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0402358-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-63034
title: Redemption tidings, vol. 43, nos. 1-52, 6 Jan. - 28 Dec. 1967

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle for vol. 43, nos. 1-39 (6 Jan. - 29 Sept. 1967).
DOI: 10.15468/dl.qrdcsc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trilepida fuliginosa (Passos, Caramaschi & Pinto, 2006))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049340-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vzzce
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phomopsis occidentalis (Sacc.) Traverso",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Switzerland",
 "Country is Switzerland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0402351-210914110416597/datasets/export for details.
DOI: 10.25549/pcra-c14-62916
title: Redemption tidings, vol. 43, nos. 1-52, 6 Jan. - 28 Dec. 1967

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle for vol. 43, nos. 1-39 (6 Jan. - 29 Sept. 1967).
DOI: 10.15468/dl.mljazm
title: Occurrence Download

description: A dataset containing 790 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphacophilus Provancher, 1888"
 ]
}

 The dataset includes 790 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002345-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-63266
title: Redemption tidings, vol. 43, nos. 1-52, 6 Jan. - 28 Dec. 1967

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle for vol. 43, nos. 1-39 (6 Jan. - 29 Sept. 1967).
DOI: 10.15468/dl.n65957
title: Occurrence Download

description: A dataset containing 56621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Pellorneum ruficeps",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 56621 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079042-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c7ccew
title: Occurrence Download

description: A dataset containing 964 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sorindeia madagascariensis (Spreng.) DC."
 ]
}

 The dataset includes 964 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0402382-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-62902
title: Redemption tidings, vol. 43, nos. 1-52, 6 Jan. - 28 Dec. 1967

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle for vol. 43, nos. 1-39 (6 Jan. - 29 Sept. 1967).
DOI: 10.15468/dl.x678kq
title: Occurrence Download

description: A dataset containing 1006 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Penelope barbata",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 1006 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079052-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbm6j5
title: Occurrence Download

description: A dataset listing the 657 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Chrysomelidae of Central Europe"
 ]
}

 The dataset's 657 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044121-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57rs4h
title: Occurrence Download

description: A dataset containing 603 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strombosia scheffleri Engl."
 ]
}

 The dataset includes 603 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0402390-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfuprm
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Edinburgh (E) Herbarium Specimens"
 ]
}

 The dataset includes 348 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030004-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swugkk
title: Occurrence Download

description: A dataset containing 1770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Tolpis umbellata Bertol."
 ]
}

 The dataset includes 1770 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049336-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-63856
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.