cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7f38rggxx5
title: Evaluation of the Fiscal Policy of Bangladesh

description: Fiscal policy plays an important role in accomplishing crucial economic goals, especially production and employment increase. Acknowledgement and application of fiscal policy require differentiated attitudes in different situations. This paper investigates the relative importance of fiscal policies in altering real output growth in Bangladesh. In this paper, the authors discuss the fiscal policy model and its implications for fulfilling economic goals, especially in the current economic crisis.
DOI: 10.6084/m9.figshare.11328584.v2
title: Data and codes for ST-ISE.zip

description: The data and codes for ST-ISE model. <br>
DOI: 10.6084/m9.figshare.16850221.v1
title: Sample QC Data

description: This file is used by the SampleQC tableau workbook to provide insights on which samples passed QC. It is a subset of the file that is generated by the RNASeq pipeline where all the genes are dropped out.
DOI: 10.6084/m9.figshare.25111214.v2
title: Reserves_2021

description: This file contains reserve data from USGS and BGS for the year 2021 for the 48 resources considered in ESSENZ and ESSENZ+.
DOI: 10.6084/m9.figshare.27026701.v2
title: Wetland restoration is effective but not sufficient to compensate SOC losses

description: A global dataset of SOC in restored, degraded and natural wetlands (1996–2023)
DOI: 10.6084/m9.figshare.5414170.v1
title: NBA data

description: The sample for this study is composed of NBA players from the 1999–2000 season through the 2015–2016 season. Data on the ethnicities of NBA players was manually collected by searching websites such as Wikipedia, Facebook, Google, and Baidu Encyclopedia; where it was impossible to make this judgment based on player data, players’ pictures published on the Basketball Reference website (http://www.basketball-reference.com) were examined to determine ethnicity (Wallace, 1988). Player salaries were collected from the ESPN website (http://www.espn.com/nba/salaries); player characteristics and technical data come from the ESPN website and the Basketball Reference website. Players who changed teams within a season were eliminated from the sample, as were players who made less than two appearances on the court within a season.
DOI: 10.17632/rmmznpxmss
title: Data for: Incorporating Non-Covalent Interactions in Transfer Learning Gaussian Process Regression Models for Molecular Simulations

description: This repository provides additional data to accompany the paper:

"Incorporating Noncovalent Interactions in Transfer Learning Gaussian Process Regression Models for Molecular Simulations"
M. L. Brown, B. K. Isamura, J. M. Skelton and P. L. A. Popelier
Journal of Chemical Theory and Computation (2024)
DOI: 10.1021/acs.jctc.4c00402

This article utilises s a dimeric GPR model in the quantum chemical topology based force field, FFLUX, for the first time, allowing for simulations free from non-bonded potentials. This model is benchmarked against a monomer model (combined with a Lennard-Jones potential). Transfer learning is also implemented to counteract the cost of training systems with increased dimensionality. This repository makes available a full set of data from these calculations, including:

• Energies of dimers used to calculate formation energies;
• Gaussian process regression (GPR) models used in simulations;
• Data for the calculated IR spectra;
• Files used to generate the optimised structures;
• Visual supporting data for the paper;
• Data used to train and test models;
• Forces used for vibrational frequency calculations.

For details of how this data was generated, users are referred to the published article and supporting information.

While DL_FFLUX (the program that houses the FFLUX force field) has not yet been made publicly available, input files and the GPR models are provided for when it is made available.
DOI: 10.6084/m9.figshare.20229354.v1
title: EXP_6

description: eeg data
DOI: 10.6084/m9.figshare.20532045.v2
title: datasets

description: Expression data and annotation files for datasets used in the manuscript.
DOI: 10.6084/m9.figshare.24262375.v1
title: <b>Defective FGFR1 signaling disrupts glucose regulation: Evidence from humans with </b><b><i>FGFR1</i></b><b> mutations. </b>Maria I. Stamou, Crystal J. Chiu, Shreya V. Jadhav, Vanessa Ferreira Lopes, Kathryn B. Salnikov, Lacey Plummer, Margaret F. Lippincott, Hang Lee, Stephanie B. Seminara, Ravikumar Balasubramanian

description: Supplemental Tables 1-3 for the manuscript entitled "<b>Defective FGFR1 signaling disrupts glucose regulation: Evidence from humans with </b><b><i>FGFR1</i></b><b> mutations.</b>"
DOI: 10.17632/87rhkfgxtp
title: MORPHY, a program for an automated “atoms in molecules” analysis

description: Abstract The operating manual for a structured FORTAN 77 program called MORPHY is presented. This code performs an automated topological analysis of a molecular electron density and its Laplacian. The program is written in a stylistically homogeneous, transparant and modular manner. The input is compact but flexible and allows for multiple jobs in one deck. The output is detailed and has an attractive lay-out. Critical points in the charge density and its Laplacian can be located in a robust and econo... Title of program: MORPHY Catalogue Id: ADCJ_v1_0 Nature of problem Topological Analysis. Versions of this program held in the CPC repository in Mendeley Data ADCJ_v1_0; MORPHY; 10.1016/0010-4655(95)00113-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/gh9krhbpbv
title: Data for: A 250 ka leaf-wax δD record from a loess section in Darai Kalon, Southern Tajikistan

description: Plant wax isotope data from Darai Kalon, Southern Tajikistan
DOI: 10.6084/m9.figshare.25359751.v1
title: Data for "Tree diversity reduces variability in sapling survival under drought", accepted for publication in Journal of Ecology.

description: to recreate the estimates and figures reported in the papeThis data archive contains the datasets used in the analysis (.csv files) and the code to run the analysis. The model objects (stored as .RDS objects) are also provided, to recreate the same estimates and figures as the ones reported in the paper.
DOI: 10.6084/m9.figshare.13714063.v1
title: edgelist_permission_formal_hierarchies_informal_networks

description: edgelist
DOI: 10.6084/m9.figshare.3187483.v2
title: Life between tides: spatial and temporal variation of intertidal macroalgae R scripts and Data

description: R markdown scripts for the statistical analysis and figures of the paper: <br><br>
	
	
	
	
	


Marcías, M.L., Deregibus, D., Saravia, L., Campana, G.L. & Quartino, M.L. (2016). Life between tides: Spatial and temporal variations of an intertidal macroalgal community at Potter Peninsula, South Shetland Islands, Antarctica. <i>Estuar. Coast. Shelf Sci.</i><br><i>RMarkdown files with Rmd extension have the statistical analysis, and Data.zip have the data used in the paper</i><br>
DOI: 10.17632/4hc54vnzx6
title: Nuclear Safety, 2nd edition - Gianni Petrangeli

description: CALCULATION OF THE RELEASES DISPERSION : INSTANTANEOUS RELEASE CALCULATION OF RELEASES DISPERSION: INSANT. REL. WITH FUMIGATION CALCULATION OF THE RELEASE DISPERSION : CONTINUOUS RELEASE CALCULATION OF THE RELEASES DISPERSION : CONTINUOUS REL. WITH FUMIGATION CALCULATION OF THE DUHAMEL INTEGRAL OF AN ACCELEROGRAM WITH 1000 POINTS IN COLUMNS A AND B (ROWS 15 &gt; 1014) CALCULATION OF TEMPERATURES IN A DRY CORE PRESCONT PROGRAM "PS" : INPUT DATA AND LAST STEP DATA
DOI: 10.17632/sh5b6f6z2c
title: Data for: Local Measurements on Vertical Subcooled Flow Boiling of Refrigerant Novec 649

description: This is the data presented in the corresponding article in tabulated form
DOI: 10.6084/m9.figshare.26116978.v1
title: BigWigs

description: There has been a notable increase in interest in the transcriptional regulator Kaiso, which has been linked to the regulation of clonal haematopoiesis, myelodysplastic syndromes, and tumourigenesis. Nevertheless, there is as yet no consistent data on the binding sites of Kaiso in vivo in the genome. In this study, we employed Caki-1 kidney carcinoma cells and their derivative, which lacks the Kaiso gene, to ascertain the genomic targets of Kaiso. The principal binding motifs for Kaiso are CGCG and CTGCNAT, with 72% of all binding sites containing both sequences. The significance of methyl-DNA binding activity was confirmed through the examination of the genomic distribution of the E535A mutant variant of Kaiso, which cannot bind methylated DNA in vitro but remains competent to interact with CTGCNA sequences. Our findings indicate that Kaiso is present at CpG islands with a preference for methylated CpG islands. Furthermore, Kaiso binding sites exhibit enrichment at CpG islands with partial methylation at the 5' and/or 3' boundaries, as well as wave-like methylation patterns. The present study delineates the genomic distribution of Kaiso in cancer cells, thereby confirming its role as a factor with a complex mode of DNA binding and a strong association with CpG islands.
DOI: 10.6084/m9.figshare.28638467.v1
title: SERUM ELISA WT mRNA Pfizer NEW UTRs.xlsx

description: ELISA for anti-S-protein antibody on sera from vaccinated mice
DOI: 10.6084/m9.figshare.5719375.v1
title: The Effect of Heat Treatment on Dynamic Strain Aging Behaviour of AISI H10 Hot Work Tool Steel

description: Dynamic strain aging (DSA) behaviour of hot work tool steel (H10) was investigated under as- received (AR) and as-quenched (AQ) conditions. Hot tensile test was carried out in the temperatures of 25°C-700°C at a strain rate of 1x10-3s-1. The tensile properties indicated that AQ samples showed an increase in yield strength (YS) and ultimate tensile strength (UTS) but a decrease in elongation at 200°C or 300°C consistent with DSA. However, AR samples revealed a decrease in YS and UTS for the same testing temperatures. This indicated the presence of less amount of free C or N in solution of AR samples. Further increase in the testing temperature has increased the elongation. It is believed that DSA occurs in H10 tool steel at different temperatures because of interaction between dislocations and interstitial solute atoms (C or N) or substitutional atoms (Cr or Mo).
DOI: 10.6084/m9.figshare.14331014.v1
title: AIS vessel tracking data

description: This data file contains AIS vessel tracking records used in a study of low-frequency ocean noise off the California coast. Data span January through July of 2018 - 2020.
DOI: 10.6084/m9.figshare.28914446.v1
title: Supplementary figures and tables for CAR/PXR regulation of ORM gene expressions.

description: The constitutive androstane receptor (CAR) and pregnane X receptor (PXR) are xenobiotic nuclear receptors activated by various xenobiotics, drugs, hormones, and bile acids (BAs). Upon activation, these nuclear receptors play critical roles in regulating systemic energy homeostasis. However, precise mechanisms through which CAR and PXR influence systemic metabolism remain incompletely understood. Here, we investigated the impact of CAR and PXR on the liver-secreted hormone (<i>i.e.</i>, hepatokine) expressions in response to BA stress such as cholic acid (CA) feeding. Our analysis revealed that several BA-activated genes, including the well-known CAR/PXR target, aldo-keto reductase family 1, member B7 (<i>Akr1b7</i>), were commonly increased by CAR- and PXR-agonist treatments. Notably, we identified a gene cluster encoding new BA-regulated hepatokines, orosomucoids (ORMs), as direct transcriptional targets of CAR and PXR. The <i>Orm1</i> and <i>Orm2</i> expressions were completely abolished in the absence of both CAR and PXR following CA feeding. Additionally, we found that <i>Orm</i> transcriptions are dynamically regulated under various metabolic conditions, proposing a potential contribution of CAR/PXR. In conclusion, our study demonstrated that BA stress activates CAR and PXR, which play a key role in regulating hepatokine expression, including ORMs. This suggests a potential link between hepatic BA signaling, CAR/PXR activity, and systemic metabolic effects.
DOI: 10.17632/pmxt7h8cd8
title: Gully Erosion Dataset

description: An gully erosion dataset was constructed by using high-resolution optical imagery. The imagery covers key agricultural regions within Lishu County (Siping City), Nong'an County (Changchun City), Qianguo County and Fuyu City (Songyuan City) in Jilin Province, China. Data acquisition occurred during periods of low vegetation cover (April-May and October-November) between 2020 and 2023 to optimize gully visibility. The study areas are predominantly characterized by chernozem, known for their susceptibility to soil erosion.
Integrating findings from field surveys and high-resolution remote sensing interpretation, the identified gully erosion features were categorized into three primary types: (1) ephemeral gullies (small-scale, transient channels formed by concentrated overland flow, often recurring seasonally); (2) permanent gullies (deep-seated, stable channels with near-vertical sidewalls and irreversible morphology); and (3) gullies in complex environments (features whose detection is hindered by vegetation, terrain complexity, or anthropogenic disturbance). An initial dataset of gully images was constructed. All images were standardized to 512×512 pixels for uniformity. Using the LabelMe software, annotations were created, marking gully pixels in red and background pixels in black. To enhance dataset scale and diversity for robust model training, data augmentation was performed using spatial-level enhancements (rotation, flipping) and pixel-level enhancements (blurring, noise addition, contrast adjustment) for each gully type.
DOI: 10.6084/m9.figshare.20081396.v3
title: axivity-ax6-left-forearm-nondominant-v2

description: 6-axis actigraphy (translation and rotation) using Axivity AX6 (similar to AX3 used in UK BioBank), configured with 100Hz sampling frequency, 16bit resolution and 2000dps gyro/rotation. <br> Attached with a velcro to the interior of a cotton wrist band with arrow facing down towards the ground/back when arms are in a natural position along the body, on the left forearm (non-dominant arm). <br> Started acquisition in mid-March 2022 up to March 2023. <br> The difference with the v1 (first year) acquisition is that the device is now worn INSIDE the cotton wrist band, instead of outside, to be more robust against detachment during motion in day-to-day activities, especially outdoors. Hence, the light sensor and ambient temperature sensor should be considered unusuable. <br> Each file represents one acquisition session of about 1 week. Multiple files can be concatenated to study a longer time period.
DOI: 10.6084/m9.figshare.27925425.v1
title: Patients AU-NZ_ Endometriosis, Cannabis and Insurance - February 2, 2023 - Be Damned Paper.xlsx

description: The study was approved by Western Sydney University Human Research Ethics Committee (approval number H15099): An online, anonymous, cross-sectional survey was hosted on Qualtrics and was open between October- December 2022. Researchers recruited respondents through social media and email distribution to one of Australia’s largest medicinal cannabis advocacy platforms (Cannareviews.co). Inclusion criteria were women (and those assigned female at birth) aged 18 years or older; had a diagnosis of endometriosis from a doctor; were residents of Australia or New Zealand (NZ); and had consumed either illicit cannabis or a legal cannabinoid based medicinal product (CBMP) that was prescribed by a doctor (or via a clinical trial or nurse practitioner), after 1 November 2016, to manage endometriosis and chronic pelvic pain related symptoms. Informed consent was obtained from all participants, with the survey introduction and participant information sheet stating that completion of the questionnaire implied consent. The 88-question survey was developed by the research team and collected information on the severity of endometriosis and health-related quality of life in those with endometriosis who consume cannabinoids and explored insurance and law related issues including the self-reported impact of cannabis and CBMP on the use of other legal drugs and disclosure to primary doctor and life insurers.
DOI: 10.6084/m9.figshare.16543968.v5
title: Estimated decline in global earthworm population size caused by pesticide residue in soil

description: This package includes the calculated LC<sub>50,mix</sub> in [mg/kg-soil] resulting from the soil residue of up to 20 active ingredients of pesticides used in 9 cropping systems, the number of active substances in the mixture, and the percent decline in earthworm population size in these cropping systems. The 9 cropping systems under consideration are: corn, soybean, wheat, cotton, vegetables and fruits, rice, orchards and grapes, alfalfa, and other.
DOI: 10.6084/m9.figshare.17284274.v1
title: Additional file 6 of Design and performance of a bovine 200 k SNP chip developed for endangered German Black Pied cattle (DSN)

description: Additional file 6: Table S5. Number of selected, successfully called (high-quality genotype calls) and in the different populations segregating variants (SNPs and indels) on the DSN200k SNP chip per category of selection.
DOI: 10.6084/m9.figshare.19499339.v1
title: patches and local annotations, slide 034, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.24115230.v1
title: DATA PENELITIAN TERBARU, KATEGORI AWAL, CHI SQUARE, BBATU JUNRRREJO

description: Data for manuscript :THE ASSOCIATION BETWEEN LIFESTYLE FACTORS WITH HYPERTENSION CONTROL in INDONESIAN PRIMARY HEALTH CARE: A CROSS SECTIONAL STUDY<br>
DOI: 10.17632/p77tj6d88y
title: Sup_deep_diff_in_controls_FullTable

description: Table shows results of differential expression analysis of RNA-seq data from superficial and deep sublayers of the CA1 region of the dorsal hippocampus from the brain of healthy adult rats. Superficial and deep sublayers of the CA1 region were isolated by laser capture microdissection prior to RNA isolation and library construction for RNA-seq. This data table is related to the published article Cid et al., (2021), doi: https://doi.org/10.1016/j.celrep.2021.109229.
DOI: 10.17632/sj3v33p37w
title: Data for: Efficient sequestration of terrestrial organic carbon in the New Britain Trench

description: This dataset contain geochemical data (TOC, OC/N, 13C , 14C, mean grain size, mineral surface area) in four cores from the New Britain Trench.
DOI: 10.6084/m9.figshare.12941684.v1
title: Supplementary Material for: Oxytocin Receptor Gene DNA Methylation: A Biomarker of Treatment Response in Obsessive-Compulsive Disorder?

description: <b><i>Introduction:</i></b> Obsessive-compulsive disorder (OCD) is associated with high chronicity and treatment resistance, indicating the need for early therapy response markers enabling fast and personalized treatment adaptations. Although epigenetic mechanisms such as DNA methylation of the oxytocin receptor <i>(OXTR)</i> gene have previously been linked to OCD pathogenesis, epigenetic markers as predictors of treatment success have not yet been investigated in OCD. <b><i>Objective:</i></b> For the first time, this therapyepigenetic study aimed to investigate the role of <i>OXTR</i> methylation as a treatment response marker in OCD. <b><i>Methods:</i></b> In total, 113 inpatients with OCD (57 females) were compared to 113 age- and sex-matched healthy controls. Patients were investigated over a 10-week course of standardized, OCD-specific cognitive-behavioral psychotherapy. Clinical response was measured using the Yale-Brown Obsessive Compulsive Scale (Y-BOCS) at baseline, before in vivo exposure, and after therapy. <i>OXTR</i> exon III methylation was analyzed via direct sequencing of sodium bisulfite-treated DNA extracted from blood cells. <b><i>Results:</i></b> Relative <i>OXTR</i> hypermethylation was observed in OCD patients compared to healthy controls. In OCD, higher baseline <i>OXTR</i> methylation was found to predict impaired treatment response at both categorical (responders vs. nonresponders) and dimensional (relative Y-BOCS reduction) levels, whereas lower baseline methylation was related to treatment response and greater symptom improvements. Analysis of Y-BOCS subdimensions revealed that the association between <i>OXTR</i> hypermethylation with impaired treatment response applied especially to symptoms related to obsessions, but not compulsions. <b><i>Conclusions:</i></b> <i>OXTR</i> hypermethylation may constitute a predictive marker of impaired treatment response in OCD and thus carries great potential for future personalized treatment efforts in OCD.
DOI: 10.6084/m9.figshare.26325049.v1
title: <i>Pseudomonas </i>sp. HOU2 spreadsheet of predicted features

description: The HOU2 spreadsheet of predicted features of the complete genome of Pseudomonas sp. HOU2 were the results analyzed by RAST (Rapid Annotation using Subsystem Technology) (https://rast.nmpdr.org/) on 18 July 2024 with the following selected optionsGenetic code: 11Annotation scheme: RASTtkPreserve gene calls: noAutomatically fix errors: yesFix frameshifts: yesBackfill gaps: yes<br>NCBI Sequence Read Archive of Pseudomonas sp. HOU2 is SRR29666724 (https://www.ncbi.nlm.nih.gov/sra/SRR29666724)NCBI complete genome of Pseudomonas sp. HOU2 is CP160398.1 (https://www.ncbi.nlm.nih.gov/nuccore/CP160398)
DOI: 10.6084/m9.figshare.19904744.v1
title: From “mentally ill” to “citizens”: historical analysis of the construction of political categories in mental health in Brazil

description: Abstract Public policies are based on categories that have a double effect: build eligibility for rights and generate symbolic effects, reproducing or fighting social stigmas. This article aims to analyze the historical setup of categories targeted in mental health policies in Brazil. Based in a study of the legislation from 1841 to 2017, we observed how was the processes of constructing the political categories of mental health - passing from users to citizens or mentally ill. The processes of control of public policies were selected for the respect of users of mental health policy, the social framework of data and the criteria for access to policies and the construction of social stigmas. The analysis shows important changes in these categories over time that tried to remove stigmas based on new conceptions proposed by social movements of mental health, international policies and social changes, such as Brazilian re-democratization. However, we also highlight the difficulty of effectively coping with stigmas due to the lack of consensus in the field itself, resistance to changes in social categories, family members and health professionals.
DOI: 10.6084/m9.figshare.25284883.v1
title: <b>AMPK regulates Bcl2-L-13-mediated mitophagy induction for cardioprotection</b>

description: The accumulation of damaged mitochondria in the heart is associated with heart failure. Mitophagy is an autophagic degradation system that specifically targets damaged mitochondria. We previously reported that Bcl2-like protein 13 (Bcl2-L-13) mediates mitophagy and mitochondrial fission in mammalian cells. However, the <i>in vivo</i> function of Bcl2-L-13 remains unclear. Here, we demonstrate that Bcl2-L-13-deficient mice and knock-in mice, in which the phosphorylation site (Ser272) on Bcl2-L-13 was changed to Ala, showed left ventricular dysfunction in response to pressure overload. Attenuation of mitochondrial fission and mitophagy led to impairment of ATP production in these mouse hearts. In addition, we identified AMPKa2 as the kinase responsible for the phosphorylation of Bcl2-L-13 at Ser272. These results indicate that Bcl2-L-13 and its phosphorylation play an important role in maintaining cardiac function. Furthermore, the amplitude of stress-stimulated mitophagic activity could be modulated by AMPKa2.