cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10078770
title: Short and Long Read Sequences from VIM-1 producing (Klebsiella pneumoniae test-dataset)

description: Creation of a downsized version of the long and short reads data of VIM-1 producing Klebsiella pneumoniae. Samples were obtained from the Hospital Infanta Cristina (Badajoz, Spain) on October 11th, 2019. 
- Long read data: Oxford Nanopore Technology (A1403KPN.fastq.gz).
- Short read data : Illumina (A1403KPN_R2_filtered.fastq.gz && A1403KPN_R2_filtered.fastq.gz)
DOI: 10.5281/zenodo.10079186
title: Short and Long Read Sequences from VIM-1 producing (Klebsiella pneumoniae test-dataset)

description: Creation of a downsized version of the long and short reads data of VIM-1 producing Klebsiella pneumoniae. Samples were obtained from the Hospital Infanta Cristina (Badajoz, Spain) on October 11th, 2019. 
- Long read data: Oxford Nanopore Technology (A1403KPN.fastq.gz).
- Short read data : Illumina (A1403KPN_R2_filtered.fastq.gz && A1403KPN_R2_filtered.fastq.gz)
DOI: 10.3886/e193585v1
title: Fisher & Hardy - Money Matters: Consumption Variability Across the Income Distribution

description: This repository contains the replication files for:<br><br>“Money Matters: Consumption Variability Across the Income Distribution”<br>in Fiscal Studies<br>https://onlinelibrary.wiley.com/doi/10.1111/1475-5890.12339<br><br>by Jonathan Fisher and Bradley Hardy
DOI: 10.3886/e193585
title: Fisher & Hardy - Money Matters: Consumption Variability Across the Income Distribution

description: This repository contains the replication files for:<br><br>“Money Matters: Consumption Variability Across the Income Distribution”<br>in Fiscal Studies<br>https://onlinelibrary.wiley.com/doi/10.1111/1475-5890.12339<br><br>by Jonathan Fisher and Bradley Hardy
DOI: 10.3886/e193585v2
title: Fisher & Hardy - Money Matters: Consumption Variability Across the Income Distribution

description: This repository contains the replication files for:<br><br>“Money Matters: Consumption Variability Across the Income Distribution”<br>in Fiscal Studies<br>https://onlinelibrary.wiley.com/doi/10.1111/1475-5890.12339<br><br>by Jonathan Fisher and Bradley Hardy
DOI: 10.57995/fg5k-ys54
title: Student and staff views on plagiarism in computer science

description: Survey data for students and staff from a variety of disciplines to determine their views and experiences of plagiarism. This data is sub divided into computer science and non computer science disciplines.
DOI: 10.5281/zenodo.10078558
title: Data of "Distribution of porosity surrounding a microfiber in cement paste"
DOI: 10.5281/zenodo.10078559
title: Data of "Distribution of porosity surrounding a microfiber in cement paste"
DOI: 10.5281/zenodo.10079027
title: The Effect of Perception of Poverty on Quality of Life in Old Women and the Mediation of Depression Dataset
DOI: 10.5281/zenodo.10079028
title: The Effect of Perception of Poverty on Quality of Life in Old Women and the Mediation of Depression Dataset
DOI: 10.34740/kaggle/dsv/6911320
title: MoviesDatasets
DOI: 10.5281/zenodo.10079257
title: fangzhen
DOI: 10.5281/zenodo.10079258
title: fangzhen
DOI: 10.5066/p9kfcblh
title: Data and analytical code assessing eleven songbird species' responses to environmental change during summertime (2008 - 2020) in the InterMountain West, USA

description: This data release provides avian data for 11 songbird species (Bewick’s wren [Thryomanes bewickii], black-throated gray warbler [Setophaga nigrescens], Brewer’s sparrow [Spizella breweri], gray flycatcher [Empidonax wrightii], gray vireo [Vireo vicinior], green-tailed towhee [Pipilo chlorurus], juniper titmouse [Baeolophus ridgwayi], loggerhead shrike [Lanius ludovicianus], sagebrush sparrow [Artemisiospiza nevadensis], sage thrasher [Oreoscoptes montanus], and Townsend’s solitaire [Myadestes townsendi]) associated with summertime point count surveys conducted throughout the InterMountain West under the Integrated Monitoring in Bird Conservation Regions (IMBCR) program, 2008 - 2020. Additionally, remotely sensed environmental data used in analyses, summarized at various spatial extents, is included in this data release. Finally, we provide code written in the R programming language to model avian abundance as a function of environmental covariates, evaluate model output for fit and chain convergence, and summarize model results in both table and figure formats.
DOI: 10.25387/g3.24446782
title: Supplemental Material for Schoemaker, et al. 2023

description: Supplementary File S1: Best linear unbiased estimates (BLUEs) of inbred lines from mapping populations and Wisconsin Diversity (WiDiv) panel.SupplementaryFileS2.hmp.txt: Hapmap used for the association analysis.Supplementary File S3.RData: R objects for conducting QTL mapping.Schoemaker,-G3-Supplementary-File-S4.html: An HTML file with a description of the objects in Supplementary File S3 and provides the necessary code to conduct each of the steps for genetic mapping.
DOI: 10.25387/g3.24446782.v1
title: Supplemental Material for Schoemaker, et al. 2023

description: Supplementary File S1: Best linear unbiased estimates (BLUEs) of inbred lines from mapping populations and Wisconsin Diversity (WiDiv) panel.SupplementaryFileS2.hmp.txt: Hapmap used for the association analysis.Supplementary File S3.RData: R objects for conducting QTL mapping.Schoemaker,-G3-Supplementary-File-S4.html: An HTML file with a description of the objects in Supplementary File S3 and provides the necessary code to conduct each of the steps for genetic mapping.
DOI: 10.6084/m9.figshare.24517705
title: Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity

description: High throughput sequencing of B cell receptors (BCRs) is increasingly applied to study the immense diversity of antibodies. Learning biologically meaningful embeddings of BCR sequences is beneficial for predictive modeling. Several embedding methods have been developed for BCRs, but no direct performance benchmarking exists. Moreover, the impact of the input sequence length and paired-chain information on the prediction remains to be explored. We evaluated the performance of multiple embedding models to predict BCR sequence properties and receptor specificity. Despite the differences in model architectures, most embeddings effectively capture BCR sequence properties and specificity. BCR-specific embeddings slightly outperform general protein language models in predicting specificity. In addition, incorporating full-length heavy chains and paired light chain sequences improve the prediction performance of all embeddings. This study provides insights into the properties of BCR embeddings to improve downstream prediction applications for antibody analysis and discovery.
DOI: 10.5281/zenodo.10078607
title: Raw glider data: 9 months of hydrographic observations in the Gulf of Oman.

description: 68 repeat transects and 2 virtual moorings covering a spring/neap cycle collected by a SeaExplorer glider with T, S, O2, Chl, Optical backscatter, PAR data in the Gulf of Oman. Dataset collected as part of the ONR Global project "Shelf slope dyanmics in the Sea of Oman: How submesoscale processes control food and water security". The glider was deployed from the north shore of Oman into the Gulf of Oman, sampling down to 1000m in the oxygen minimum zone.
 
Archive contains all of the raw data provided by the SeaExplorer in the manufacturer's standard .csv format. ADCP data collected by the glider are provided alongside the processed dataset: https://zenodo.org/doi/10.5281/zenodo.10075773
DOI: 10.5281/zenodo.10078608
title: Raw glider data: 9 months of hydrographic observations in the Gulf of Oman.

description: 68 repeat transects and 2 virtual moorings covering a spring/neap cycle collected by a SeaExplorer glider with T, S, O2, Chl, Optical backscatter, PAR data in the Gulf of Oman. Dataset collected as part of the ONR Global project "Shelf slope dyanmics in the Sea of Oman: How submesoscale processes control food and water security". The glider was deployed from the north shore of Oman into the Gulf of Oman, sampling down to 1000m in the oxygen minimum zone.
 
Archive contains all of the raw data provided by the SeaExplorer in the manufacturer's standard .csv format. ADCP data collected by the glider are provided alongside the processed dataset: https://zenodo.org/doi/10.5281/zenodo.10075773
DOI: 10.5281/zenodo.10079271
title: The Effect of Perception of Poverty on Quality of Life in Old Women and the Mediation of Depression Dataset
DOI: 10.5281/zenodo.10079272
title: The Effect of Perception of Poverty on Quality of Life in Old Women and the Mediation of Depression Dataset
DOI: 10.5281/zenodo.10079311
title: Search Strategy
DOI: 10.5281/zenodo.10079312
title: Search Strategy
DOI: 10.6084/m9.figshare.23058311.v4
title: <strong>Supplementary data (ECOSER-S-23-00352): </strong>Appendix A - Data parameters

description: <strong>Supplementary data (ECOSER-S-23-00352): </strong>Appendix A - Data parameters
DOI: 10.17909/7h00-kx57
title: Data from Jiménez-Teja+2023
DOI: 10.5281/zenodo.10079321
title: PROTECTION OF IRRIGATED AREAS FROM WATER EROSION
DOI: 10.5281/zenodo.10079322
title: PROTECTION OF IRRIGATED AREAS FROM WATER EROSION
DOI: 10.18167/dvn1/sekdse
title: Model for reproducing paper results: "Mutual Aid: when does resource scarcity favour group cooperation?"

description: An illustrative model developed with netlogo 5.3.1 for Ecological Complexity paper. This model makes it possible to reproduce the results, to understand their limits and the epistemological scope. Paper abstract : understanding the origins, conditions, advantages, and limitations of cooperation in natural and social systems has motivated many investigations in the biological and social sciences. To investigate individual cooperative behaviour in the face of temporal and spatial heterogeneity of resources we considered a definition of cooperation at the same ontological level as competition. We define a cooperative behaviour when an agent acts upon one or more resource(s) with a beneficial result in at least one resource for a recipient of this action, and with a selection process for this behaviour on the side of the acting agent. We implemented an agent-based model that represents the interactions of agents through their use of resources. With this model, we illustrated how scarcity of resources in space and time might create situations where cooperative behaviour is beneficial to individuals or to egalitarian groups. Simulations highlighted that temporal scarcity as spatial scarcity of the resource procures advantages to egalitarian groups over competitive individuals. Additionally, the factors favouring equity among agents for the access to the resource promote the success of cooperation. Simulations also showed the limitations imposed by group size on cooperation in the context of a common-pool management system. The possibility of using indicators of (spatio-temporal) resource variability to characterize the potential for the emergence of cooperation is an interesting research objective for future work.
DOI: 10.5281/zenodo.8170355
title: Confocal data of Mysteriomorphus sp., NIGP202848

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for the female specimen of Mysteriomorphus sp. (NIGP202848) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "Further mysteries solved in Mysteriomorphidae (Coleoptera: Elateroidea) from mid-Cretaceous amber of northern Myanmar: discovery of female specimens, and synonymy of Trapezioceps recently described as Cantharidae" (DOI:10.1016/j.cretres.2023.105756).
Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.
DOI: 10.5281/zenodo.8170356
title: Confocal data of Mysteriomorphus sp., NIGP202848

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for the female specimen of Mysteriomorphus sp. (NIGP202848) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "Further mysteries solved in Mysteriomorphidae (Coleoptera: Elateroidea) from mid-Cretaceous amber of northern Myanmar: discovery of female specimens, and synonymy of Trapezioceps recently described as Cantharidae" (DOI:10.1016/j.cretres.2023.105756).
Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.
DOI: 10.17909/hex0-qj28
title: Data from Jimenez-Teja+2023
DOI: 10.6084/m9.figshare.24517363
title: reduced_v3_matrix.txt

description: In the manuscript submitted to Scientific Reports, the attached files will allow Figure 5 to be manipulated.Within anvi’o, use the following command with the files to see Figure 5:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modulesTo manipulate Figure 5, to change the ordering, use the following:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modules --state-autoload ordered_by_binThis allows Figure 5 to be reproducible as well as give the reader the ability to produce individual preferences for the Figure.
DOI: 10.6084/m9.figshare.24517363.v1
title: reduced_v3_matrix.txt

description: In the manuscript submitted to Scientific Reports, the attached files will allow Figure 5 to be manipulated.Within anvi’o, use the following command with the files to see Figure 5:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modulesTo manipulate Figure 5, to change the ordering, use the following:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modules --state-autoload ordered_by_binThis allows Figure 5 to be reproducible as well as give the reader the ability to produce individual preferences for the Figure.
DOI: 10.5066/p968uds7
title: Zooplankton Data for Cheney Reservoir near Cheney, Kansas, October 2008 through October 2022 (ver. 2.0, November 2023)

description: This U.S. Geological Survey (USGS) data release provides zooplankton data collected from Cheney Reservoir, Kansas, during October 2008 through October 2022. All data are reported as raw calculated values and are not rounded to USGS significant figures. This data release was produced in compliance with the open data requirements as a way to make scientific products associated with USGS research efforts and publications available to the public. The dataset includes all routine and quality assurance/quality control samples collected at the long-term sampling site on Cheney Reservoir located near the dam (USGS station identification number 07144790). Zooplankton were identified to the lowest possible taxonomic level and abundance (density) and biomass are reported.   First release: September 2021 (https://doi.org/10.5066/P9HT2WE0) Revised: November 2023 (ver. 2.0)
DOI: 10.5281/zenodo.10079366
title: Billigheim (Baden) Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a
German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf.
gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):
https://kalliope-verbund.info/DE-611-BF-70963
[Funktion: Im Findbuch anzeigen]
 
Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot
be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf
Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht
veröffentlicht werden dürfen).
DOI: 10.5066/p9ht2we0
title: Zooplankton Data for Cheney Reservoir near Cheney, Kansas, October 2008 through July 2021

description: This U.S. Geological Survey (USGS) data release provides zooplankton data collected from Cheney Reservoir, Kansas, during October 2008 through July 2021. All data are reported as raw calculated values and are not rounded to USGS significant figures. This data release was produced in compliance with the open data requirements as a way to make scientific products associated with USGS research efforts and publications available to the public. The dataset includes all routine and quality assurance/quality control samples collected at the long-term sampling site on Cheney Reservoir located near the dam (USGS station identification number 07144790). Zooplankton were identified to the lowest possible taxonomic level and abundance (density) and biomass are reported.
DOI: 10.26036/cnp0002053
title: Genomes of raccoon dogs provide new insights into its invasiveness, dispersal and coevolution with viruses and parasites

description: In this study, we assembled a chromosome scale genome of the raccoon dog collected from Heilongjiang, China. We explored possible genetic mechanisms of their high adaptive characteristics by screening expanded and contracted genes and comparative genomic analysis. Further, we identified several genes mutations that are highly correlated with the fur color, hair density, and body weight. This study will sure provide useful and valuable information in the management of wild raccoon population and the breeding of high quality individuals.
DOI: 10.25421/yorksj.24449983
title: R Code for calculating predicted values and effect sizes in the 2x2 Model of Perfectionism (main effects model).

description: R code to calculate predicted values for subtypes of perfectionism in the 2x2 Model of Perfectionism (Gaudreau & Thompson, 2010) based on a main effects model (no interaction term). Effect sizes (Cohen's <i>d</i>) are also calculated to test the hypotheses of the model based on equations in Gaudreau (2012).Gaudreau, P. (2012). A methodological note on the interactive and main effects of dualistic personality dimensions: An example using the 2× 2 model of perfectionism. <i>Personality and Individual Differences,</i><i> </i><i>52 </i>(1), 26-31. https://doi.org/10.1016/j.paid.2011.08.022Gaudreau, P., & Thompson, A. (2010). Testing a 2×2 model of dispositional perfectionism. <i>Personality and Individual Differences, 48</i>(5), 532–537. https://doi.org/10.1016/j.paid.2009.11.031<br><br><br>
DOI: 10.5066/p95hx7gb
title: Reprocessed single channel sparker seismic reflection data offshore central California from USGS field activities S-6-08-SC and S-6-09-SC

description: The U.S. Geological Survey collected high-resolution single channel minisparker data between Point Sal and Piedras Blancas in 2008 and 2009 with support from the Pacific Gas and Electric (PG&E) CRADA and the USGS Coastal and Marine Geology program. Reprocessing of this data in 2018 improved vertical resolution of the stratigraphy and structural deformation of the original data and was funded by an additional CRADA with PG&E. This work will aid the USGS in reviewing and refining existing interpretations, hazard assessments and development of new hypotheses. Particular targets include the Hosgri-San Gregorio fault system, and the Los Osos, and Shoreline faults. The ultimate goal of this work for both parties is to enhance earthquake hazard assessments by providing a more comprehensive understanding of regional geologic framework, seismic sequence stratigraphy and hazard assessment. These data and information are intended for science researchers, students, policy makers, and the general public.
DOI: 10.6084/m9.figshare.24518389
title: <b>Supplementary data (ECOSER-D-23-00280): </b>Appendix D - Supporting information - MPO

description: Supplementary data (ECOSER-D-23-00280): Appendix D - Supporting information - MPO
DOI: 10.6084/m9.figshare.24518389.v2
title: <b>Supplementary data (ECOSER-D-23-00280): </b>Appendix D - Supporting information - MPO

description: Supplementary data (ECOSER-D-23-00280): Appendix D - Supporting information - MPO
DOI: 10.6084/m9.figshare.24518389.v1
title: Supplementary data (ECOSER-D-23-00280): Appendix D - Supporting information - MPO

description: Supplementary data (ECOSER-D-23-00280): Appendix D - Supporting information - MPO
DOI: 10.6084/m9.figshare.23058614
title: <strong>Supplementary data (ECOSER-D-23-00280): </strong>Appendix C - Raw data

description: <strong>Supplementary data </strong> <strong>(ECOSER-D-23-00280): </strong>Appendix C - Raw data
DOI: 10.6084/m9.figshare.23058614.v1
title: <strong>Supplementary data (ECOSER-S-23-00352): </strong>Appendix C - Raw data

description: <strong>Supplementary data (ECOSER-S-23-00352): </strong>Appendix C - Raw data
DOI: 10.6084/m9.figshare.23058614.v2
title: <strong>Supplementary data (ECOSER-D-23-00280): </strong>Appendix C - Raw data

description: <strong>Supplementary data </strong> <strong>(ECOSER-D-23-00280): </strong>Appendix C - Raw data
DOI: 10.6084/m9.figshare.23058431
title: <strong>Supplementary data </strong> <strong>(ECOSER-D-23-00280): </strong>Appendix B - Species occurrence data

description: <strong>Supplementary data </strong> <strong>(ECOSER-D-23-00280): </strong>Appendix B - Species occurrence data
DOI: 10.6084/m9.figshare.23058431.v4
title: <strong>Supplementary data (ECOSER-S-23-00352): </strong>Appendix B - Species occurrence data

description: <strong>Supplementary data (ECOSER-S-23-00352): </strong>Appendix B - Species occurrence data
DOI: 10.6084/m9.figshare.23058431.v5
title: <strong>Supplementary data </strong> <strong>(ECOSER-D-23-00280): </strong>Appendix B - Species occurrence data

description: <strong>Supplementary data </strong> <strong>(ECOSER-D-23-00280): </strong>Appendix B - Species occurrence data
DOI: 10.6084/m9.figshare.24517366
title: reduced_v3_matrix.txt.newick

description: In the manuscript submitted to Scientific Reports, the attached files will allow Figure 5 to be manipulated.Within anvi’o, use the following command with the files to see Figure 5:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modulesTo manipulate Figure 5, to change the ordering, use the following:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modules --state-autoload ordered_by_binThis allows Figure 5 to be reproducible as well as give the reader the ability to produce individual preferences for the Figure.
DOI: 10.6084/m9.figshare.24517366.v1
title: reduced_v3_matrix.txt.newick

description: In the manuscript submitted to Scientific Reports, the attached files will allow Figure 5 to be manipulated.Within anvi’o, use the following command with the files to see Figure 5:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modulesTo manipulate Figure 5, to change the ordering, use the following:anvi-interactive -d reduced_v3_matrix.txt -t reduced_v3_matrix.txt.newick -p posidonia_MAGs_metabolism1.db --manual --collection-autoload important_modules --state-autoload ordered_by_binThis allows Figure 5 to be reproducible as well as give the reader the ability to produce individual preferences for the Figure.