cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23645/epacomptox.22118099.v3
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: Description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.13139309.v1
title: Fine-scale oceanographic drivers of reef manta ray visitation patterns at a feeding aggregation site

description: Acoustic tag detection data for reef manta rays and oceanographic measurements which accompanies <br>Harris, J. L., Hosegood, P., Robinson, E., Embling, C. B., Hilbourne, S. and Stevens, G. M. W. (2021) 'Fine-scale oceanographic drivers of reef manta ray (<i>Mobula alfredi),</i> visitation patterns at a feeding aggregation site’. Ecology and Evolution.
DOI: 10.6084/m9.figshare.23291972.v8
title: Urbanity Colab Data Files

description: Sample subzone files for Urbanity colab demo. Data obtained from GADM database.
DOI: 10.17632/crsm4s6dc4
title: Africa's Critical Care Capacity Dataset

description: This data shows the country-specific number and density of hospital beds, critical care beds, and anesthesia providers in Africa. Hospitals sampled by the African Surgical Outcomes Study had a median of 3 (IQR 0 – 7) critical care beds providing mechanical ventilation, with 0.9% (IQR 0 – 2) of hospital beds serving as critical care beds. This being the most current audit of hospital bed: critical care bed ratio in Africa, we adopted 0.9% as our conversion factor in estimating the total number of critical care beds per country. We calculated the total number of hospital beds per country from World Bank estimates (Supplementary Table 1). The total number of hospital beds per country was then multiplied by 0.9% to obtain the estimated number of critical care beds. This estimate was divided by the Global Burden of Disease (GBD) 2017 country-specific population estimate to obtain critical care beds per 100,000 people. Data on the number of critical care beds from the most recent national critical care capacity audits conducted in South Africa, Kenya, and Uganda were used instead of estimates for these countries.
DOI: 10.6084/m9.figshare.21440472.v2
title: Rehearsal_011022.mat

description: Data from the reherarsal done on 01/10/22.
DOI: 10.6084/m9.figshare.22009436.v2
title: A Deep-learning Model for Fast Prediction of Vacancy Formation in Diverse Materials

description: The presence of point defects such as vacancies plays an important role in material design. Here, we explore the extrapolative power of a graph neural network (GNN) to predict vacancy formation energies. We show that a model trained only on perfect materials can also be used to predict vacancy formation energies ($E_{vac}$) of defect structures without the need for additional training data. Such GNN-based predictions are considerably faster than density functional theory (DFT) calculations and show the potential as a quick pre-screening tools for defect systems. To test this strategy, we developed a DFT dataset of 473 $E_{vac}$ consisting of 3D elemental solids, alloys, oxides, semiconductors and 2D monolayer materials. We analyzed and discussed the applicability of such direct and fast predictions. We applied the model to predict 192494 $E_{vac}$ for 55723 materials in the JARVIS-DFT database. Our work demonstrates how a GNN-model performs on unseen data. The model is available at \url{https://github.com/usnistgov/alignn}. <br> Script: https://github.com/usnistgov/alignn/blob/main/alignn/scripts/alignn_evac.py ALIGNN GitHub repo: https://github.com/usnistgov/alignn JARVIS-Tools repo: https://github.com/usnistgov/jarvis JARVIS-DFT Website: https://jarvis.nist.gov/jarvisdft/ <br>
DOI: 10.6084/m9.figshare.25764060.v3
title: Data for Tarim

description: Data for calculating the P receiver functions.As described in the paper, a Butterworth bandpass filter with a frequency range of 0.05-2 Hz was applied to the data. The waveforms 20 seconds before and 100 seconds after the theoretical P arrival time were cut to calculate the receiver function.Results for the depth of D410, D660 and MTZ thickness.
DOI: 10.6084/m9.figshare.26520391.v1
title: Koduru et al PNAS 2024 - partial data set

description: These are data corresponding to Figures 2, 6, S21, 7 and 8 of Koduru et al 2024 PNAS (in press at this writing - August 8, 2024). Figure 2 is High pressure 1H-15N HSQC and 31P NMR data at 1 bar and 3000 bar at pH 6.5. Figure 6 is Small angle scattering data at 10 bar, 1000 bar, 2000 bar and 3000 bar, as well as configurations for EOM modeling. All data included in the article and its SI are available upon request to: royerc@rpi.edu
DOI: 10.6084/m9.figshare.12302228.v3
title: Pliocene (PlioMIP2 EOI400)

description: LPJ-GUESS model outputs forced with Pliocene (PlioMIP2 EOI400) climate fields.
DOI: 10.6084/m9.figshare.17847539.v1
title: Dataset: Observations from National Moth Week 2021 (Greece)

description: This dataset is from the National Moth Week 2021: Greece. <br><br><br>
DOI: 10.6084/m9.figshare.23575749.v1
title: ADHD children ,DKI

description: ADHD
DOI: 10.6084/m9.figshare.23658432.v1
title: Data for Populists in power and online engagement with populist rhetoric components on social media: Evidence from Latin America

description: Data contains text from tweets and metadata associated with them. Tweets included here were published by Latin American presidents.
DOI: 10.6084/m9.figshare.25706478.v1
title: Crusher DEM-MBD Modelling

description: Original MBD-DEM cosimulation results for a gyratory crusher.
DOI: 10.6084/m9.figshare.27312822.v4
title: TWAS_tutorial

description: This dataset has data for the TWAS tutorial described: https://github.com/corn2code/TWAStutorial/tree/main
DOI: 10.6084/m9.figshare.28333733.v1
title: Interview transcripts for Optimising interprofessional education through nutrition education: faculty and student perspectives for developing an innovative interprofessional nutrition education intervention

description: This is qualitative transcripts used in the manuscript titled: Optimising interprofessional education through nutrition education: faculty and student perspectives for developing an innovative interprofessional nutrition education intervention.
DOI: 10.6084/m9.figshare.29128115.v5
title: <b>Data-Driven Deep Learning for Predicting Ligament Fatigue Failure Risk Mechanisms</b>

description: This study proposes a multimodal integrated framework for ligament fatigue life assessment.
DOI: 10.6084/m9.figshare.1226086.v5
title: Experimental Design lab

description: Experimental Design lab dataset
DOI: 10.6084/m9.figshare.21876540.v1
title: Supplementary file 4_Included article details - 220902.xlsx

description: Supplementary excel file with Tables containing details for the 58 individual studies in a systematic review by Bergin et al, titled: " The nature and impact of patient and public involvement in cancer prevention, screening and early detection research: a systematic review ", DOI: 10.1016/j.ypmed.2022.107412 <br> Tables can be viewed / sorted / manipulated to examine specific elements of included studies. <br> The first tab (Table S4-1) provides descritive information about included studies, such as author name, year of publication, title, country, focus of research, study design, cancer type and participant descriptives. <br> The second tab (Table S4-2) describes the elements of patient and community involvement, such as who was invovled, their role, when involved in the research cycle, type of invovlement and impacts on research (positive and challenges). The codebook for this is included in tab 5. <br> The third tab (Table S4-3) provides an outline for each paper and how well the GRIPP-2 short form reporting criteria are met. <br> The fourth tab (Table S4-4) summarises the GRIPP-2 table for the 58 papers overall.
DOI: 10.6084/m9.figshare.26798932.v1
title: Finding-large-independent-sets-in-networks-using-competitive-dynamics

description: Many decision-making algorithms draw inspiration from the inner workings of individual biological systems. However, it remains unclear whether collective behaviour among biological species can also lead to solutions for computational tasks. By studying the coexistence of species that interact through simple rules on a network, we demonstrate that the underlying dynamical system can recover near-optimal solutions to the maximum independent set problem -- a fundamental, computationally hard problem in graph theory. Furthermore, we observe that the optimality of these solutions is improved when the competitive pressure in the system is gradually increased. We explain this phenomenon by showing that the cascade of bifurcation points, which occurs with increasing competitive pressure in our dynamical system, naturally gives rise to Katz centrality-based node removal in the network. The results are relevant for biology, economics, and analogue computing.
DOI: 10.17632/6bcchd6cm8
title: Covered Interest Parity: A Forecasting Approach to Estimate the Neutral Band

description: Data and codes for replicating results in "Covered Interest Parity: A Forecasting Approach to Estimate the
Neutral Band". Start in the "Readme" file.
DOI: 10.6084/m9.figshare.19398332.v1
title: Feng, Tang, Dede et al 2022

description: Raw and processed data from CRISPR screens in Feng et al 2022
DOI: 10.6084/m9.figshare.19877842.v2
title: Preliminary structural proteome of the monkeypox virus causing a multi-country outbreak in May 2022

description: The monkeypox virus (MPX) belongs to the orthopoxvirus genus of the Poxviridae family, is endemic in parts of Africa, and causes a disease in humans similar to smallpox. The most recent outbreak of MPX in 2022 is already affecting 19 countries on different continents and has consequently become a focus of interest. In particular, a molecular understanding of the virus is essential to study infection processes and pathogen-host interactions, predict tropism changes, or guide drug development and discovery as well as vaccine development or adaptation at a very early stage. Herein we present a study of the structural genome of the currently emerging MPX virus: our analysis revealed 10,043 characteristic candidate open reading frames (ORFs), and a subsequent BLAST search of the non-redundant protein database and PDB reduced the number of suspected ORFs to 925 and 123 protein sequences, respectively. Finally, we provide the 3D structures of these 123 protein sequences, which were predicted by homology modeling and are available for download.
DOI: 10.6084/m9.figshare.21776387.v1
title: Milankovitch‐paced South Asian monsoons during the Marine Isotope Stage 5

description: It contains grain size, magnetic susceptibility and color from a loess-paleosol section in the southern Tibetan Plateau.
DOI: 10.6084/m9.figshare.28462679.v2
title: Mexico's High Resolution Climate Database (MexHiResClimDB): monthly maximum temperature data for Mexico.

description: Monthly average maximum temperature for Mexico at a resolution of 20 arc-seconds for the 1951-2020 period. The data are distributed as GeoTiffs in geographical coordinates at a 20 arcsec resolution.
DOI: 10.6084/m9.figshare.28984928.v1
title: Parameter analysis of centroAnno.

description: Parameter analysis of centroAnno.
DOI: 10.6084/m9.figshare.8982683.v1
title: Raw data 2: chicken reads from amplicons generated with a naive primer set

description: These are the compressed, raw, paired-end read files generated in a Illumina MiSeq platform with a naive set of primers.Each individual is encoded in the name of file pairs by all characters before the first "_". The "R1" and "R2" at the end of file names indicate their origin as forward or reverse reads, respectively.
DOI: 10.17632/jtn7fwxp32
title: Data for Complexity at a Humid Interface: Throwing Light on Atmospheric Corrosion

description: Uploaded NAP-XPS, and VSFS data are described/discussed in a manuscript entitled 'Data for Complexity at a Humid Interface: Throwing Light on Atmospheric Corrosion', which is currently being considered for publication.
DOI: 10.6084/m9.figshare.23284334.v1
title: <strong>Reducing spatial resolution increased net primary productivity prediction of terrestrial ecosystems: A Random Forest approach</strong>

description: Net primary production (NPP) is a pivotal component of the terrestrial carbon dynamic, as it directly contributes to the sequestration of atmospheric carbon by vegetation. However, significant variations and uncertainties persist in both the total amount and spatiotemporal patterns of terrestrial NPP, primarily stemming from discrepancies among datasets, modeling approaches, and spatial resolutions. In order to assess the influence of different spatial resolutions on global NPP, we employed a random forest (RF) model using a comprehensive global observational dataset to predict NPP at 0.05°, 0.25°, and 0.5° resolutions. Our dataset contained two types of data: field observations of global NPP and predicted NPP at three resolutions. The relevant details of the data files are as follows: Filename: 01_NPP_dataset_20230601.xlsx; 02_NPP_1981_2018_0.05_degree.nc; 03_NPP_1981_2018_0.25_degree.nc; 04_NPP_1981_2018_0.5_degree.nc File information：'01_NPP_dataset_20230601.xlsx' included 3748 field observations from publicly available databases and literature, with additional information presented in section 2.1 of the research paper；‘02_NPP_1981_2018_0.05_degree.nc’ is the predicted global NPP data at 0.05° spatial resolution; ‘03_NPP_1981_2018_0.25_degree.nc’ is the predicted global NPP data at 0.25° spatial resolution; ‘04_NPP_1981_2018_0.5_degree.nc’ is the predicted global NPP data at 0.5° spatial resolution.The unit for these data is 'g C m<sup>-2 </sup>a<sup>-1</sup>'. <strong>Corresponding author</strong>: Xiaolu Tang (lxtt2010@163.com) <strong>Acknowledgments</strong>:The study was supported by the National Science Foundation of China (32271856); the Everest Scientific Research Program, Chengdu University of Technology (80000-2021ZF11410) and Large Engineering Project of Huaneng, China (JC2022/D01).
DOI: 10.6084/m9.figshare.27329736.v1
title: PIs selected from blast and orthoFinder

description: Phytopathogens and insect pests produce plant cell wall degrading proteases to degrade and inhabit the plant tissues. In response, plants produce protease inhibitors (PIs) that bind to and inactivate these proteases, playing a crucial role in disease resistance. The wild plants varieties, which have not been extensively exposed to multitude of phytopathogens, tend to possess more reselient disease resistant PIs. Given the importance of PIs from wild type species, we performed a comprehensive analysis of PIs from three solanaceae crops-potato, tomato and tobacco- across 23 wild and domesticated vatieties, with the objective of identifying potential candidates effective in combating devastating proteases produced by phytopathogens.
DOI: 10.6084/m9.figshare.28281185.v1
title: cisse_data.xlsx

description: Breath test data from all experiments reported in Cisse et al
DOI: 10.6084/m9.figshare.3562203.v1
title: Supplement 1. Symbiont population dynamics data set and cost or benefit model implementation in R.

description: File List Pdam_dataset.csv (MD5: f339fb38a32a02c75d8af0b2658d146d) Pdam_metadata.csv (MD5: 50a904eedb36ce85111a3e674d09a449) Pdam_fitModel.R (MD5: c8104a06f0574a6eb4ffb2ddb1c08b19) Pdam_runModel.R (MD5: 6860a90a42c2fc5bb356faed79afa874) Description These supplements are designed to allow the reader to reproduce the cost or benefit model implemented in this study using the statistical package R. The first two files contain the symbiont population dynamics data set (Pdam_dataset.csv) and environmental metadata (Pdam_metadata.csv) from the two experiments. The R code is divided into two files, one which fits the model structure to the data by a gradient search routine that optimizes scaling parameters (Pdam_fitModel.R), and one which implements a fitted version of the model and generates all of the figures presented in the manuscript (Pdam_runModel.R). This code will allow users to adjust and test the cost-benefit model structure and its output. Pdam_dataset.csv -- Data set used in this study Experiment: Classifies data from experiment 1 or 2<br> Time: Time point within each experiment<br> Colony: Nominal coral colony ID number from which sample was taken<br> Sym: The dominant <i>Symbiodinium</i> clade in the coral colony<br> Total: The total symbiont to host cell ratio, calculated as the sum of clade C and D symbiont to host cell ratios based on qPCR assay results<br> logTotal: Logarithm (base 10) of the total symbiont to host cell ratio Pdam_metadata.csv -- Environmental metadata from this study Experiment: Classifies data from experiment 1 or 2<br> Time: Time point within each experiment<br> i mean: Irradiance mean for time point (mol m-2 d-1)<br> i se: Irradiance SEM for time point (mol m-2 d-1)<br> t mean: Temperature mean for time point (°C)<br> t se: Temperature SEM for time point (°C) Pdam_fitModel.R -- R code for fitting model scaling parameters Pdam_runModel.R -- R code for running fitted model and generating the figures presented in this manuscript
DOI: 10.6084/m9.figshare.6799001.v3
title: FEP benchmarking set

description: Benchmarking set for alchemical relative binding free energy calculations. The data includes structures for 10 congeneric ligand-pairs bound to their receptor. The benchmarking set is challenging since 6 out of the 10 ligand modifications occur in buried pockets, where the solvent cannot equilibrate well with bulk in short timescales. <br>Furthermore, input file for the Desmond LigandFEP module are contained.<br>
DOI: 10.17632/zbyctscmbn
title: Data for "Comprehensive mapping of local and diaspora scientists for evaluation, planning and policy purposes: a database and analysis of 63951 Greek scientists"

description: Research policy and planning for a given country may benefit from reliable data on both its scientific workforce as well as the diaspora of scientists for countries with substantial brain drain. Here we use a systematic approach using Scopus to generate a comprehensive country-level database of all scientists in Greece. Moreover, we expand that database to include also Greek diaspora scientists. The database that we have compiled includes 63951 scientists who have published at least 5 papers indexed in Scopus. Of those, 35116 have an affiliation in Greece. We validate the sensitivity and specificity of the database against different control sets of scientists. We also analyze the scientific disciplines of these scientists according to the Science Metrix classification (174 subfield disciplines) and provide detailed data on each of the 63951 scientists using multiple citation indicators and a composite thereof. These analyses demonstrate differential concentrations in specific subfields for the local versus the diaspora cohorts, as well as an advantage of the diaspora cohort in terms of citation indicators especially among top-impact researchers. The approach that we have taken can be applied to map also the scientific workforce of other countries and nations for evaluation, planning and policy purposes.
DOI: 10.25375/uct.29148674.v1
title: Com-fort (Variation) (1997/2022)

description: The Com-fort installation, originally shown at the Castle, as per my artists statement, incorporated objects that speak to more current experiences of dispossession and survival in the City of Cape Town. The installation was made up of a constructed raised platform, 12 m in diameter. The structure was sprinkled with spices viz paprika, which was used to reference the historical trade of spices and various commodities around the Cape. Braziers (drums with holes) were installed on each of the five points, with a light source to imitate a fire. A blanket was placed in the central area of the installation. Both the braziers and the blanket, point to an attempt to keep warm, or to find ‘comfort’, which is particularly pertinent to the informal settlements that established that emerged around the Castle in recent times. This work was installed in the courtyard of a castle like structure in Sharjah, called Al Hisn, surrounded by, and in conversation with the new commissioned multi-channel video work called Subterfuge that I created.
DOI: 10.6084/m9.figshare.14482950.v1
title: Dataset of organizational culture, training and development, performance, and work discipline.xlsx

description: The dataset contains data of organizational culture, training and development, performance, and work discipline
DOI: 10.6084/m9.figshare.21806337.v3
title: Biostratigraphy and Paleoenvironments of the Pirabas Formation raw data

description: This dataset provides the raw counts of the Biostratigraphy and Paleoenvironments of the Pirabas Formation (Neogene, Pará State-Brazil) paper
DOI: 10.6084/m9.figshare.23330363.v1
title: Raw data spectral acclimation Synechocysits 6803

description: Raw data for manuscript: <br> <strong>Photo-physiological Acclimation in </strong><em><strong>Synechocystis </strong></em><strong>sp. PCC 6803 Provides Insight into Growth Limitation in Underwater Spectra</strong> <br> Tomáš Zavřel1*, Anna Segečová1, László Kovács2, Martin Lukeš3, Zoltán Novák4, Milán Szabó2, Boglárka Somogyi4, Ondřej Prášil3, Jan Červený1, Gábor Bernát4* <br> 1Global Change Research Institute of the Czech Academy of Sciences, Brno, 603 00, Czechia 2Biological Research Centre, Eötvös Loránd Research Network (ELKH), Szeged, 6726, Hungary 3Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, 379 01, Czechia 4Balaton Limnological Research Institute, Eötvös Loránd Research Network (ELKH), Tihany, 8237, Hungary <br> *email: zavrel.t@czechglobe.cz; bernat.gabor@blki.hu
DOI: 10.6084/m9.figshare.23807256.v1
title: AATTCT-IDS

description: AATTCT-IDS is a publicly available dataset of CT images of abdominal adipose tissue. The dataset contains 13,732 CT scan slices from 300 subjects. Multiple experienced radiologists manually labeled the adipose tissue regions of 3213 slices selected by biomedical researchers at specific layer spacings.AATTCT-IDS contains separate subcutaneous adipose tissue labeling files and visceral adipose tissue labeling files. AATTCT-IDS also open-sources the original manual label files in JSON format.
DOI: 10.6084/m9.figshare.9904934.v1
title: Gender statistics from World Bank - main CSV file only

description: Main CSV file extracted from zip file download of World Bank gender statistics file.<br>Copy of data as of 25th September 2019.<br>
DOI: 10.17632/4s6pbz6bsd
title: Clinical Characterization and Mutation Analysis of 11 Iranian Ataxia-Telangiectasia Patients: A Report of Three Novel Mutations

description: Genetic sequence analysis of ataxia-telangiectasia children and their parents.
DOI: 10.21942/uva.19310573.v1
title: Coral photosynthesis respiration calcification data

description: data for Figs. 5 and 6 in the paper
DOI: 10.6084/m9.figshare.20367570.v2
title: R intro Assignment data

description: Download this sample dataset and proceed with the assignment as described.