cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.97k73t
title: Occurrence Download

description: A dataset containing 568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branchiomma nigromaculatum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 568 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045336-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47j7kf
title: Occurrence Download

description: A dataset containing 7151 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Axis axis"
 ]
}

 The dataset includes 7151 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045337-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbe2qc
title: Occurrence Download

description: A dataset containing 1953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sylvilagus bachmani",
 "Year 2013-2019"
 ]
}

 The dataset includes 1953 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045338-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17635402
title: Climate and Environmental Drivers of Dengue Expansion in São Paulo: Data and Code

description: This repository contains the curated datasets and the full R source code used in the manuscript "Climate and environmental drivers of dengue expansion in São Paulo, Brazil: An ecological niche modelling approach", submitted to Remote Sensing Applications: Society and Environment.

This package is designed to ensure full transparency and reproducibility of the Ecological Niche Modelling (ENM) analysis presented in the study.

Contents:

1. Processed Dataset (.csv) This file contains the fully pre-processed data used as input for the MaxEnt models. It aggregates epidemiological, climatic, and demographic variables for all 645 municipalities of São Paulo State for the analyzed epidemic years (2011, 2015, and 2019).





Spatial Resolution: Municipalities (aggregated from raster data as described in the manuscript).




Temporal Resolution: Semi-annual (January–June) averages for environmental variables; Annual incidence rates for dengue.




Variables included:





Municipality Code (IBGE)




Dengue Incidence Rate (cases per 100,000 inhabitants)




Precipitation (mm) - WorldClim v2.1




Maximum & Minimum Temperature (°C) - WorldClim v2.1




Elevation (m) - WorldClim v2.1




Normalized Difference Vegetation Index (NDVI) - NASA/MODIS




Population Density (people/km²) - WorldPop





2. Analysis Script (niche-modelling-script.R) The complete R script required to reproduce the results, figures, and tables. The workflow includes:





Data Pre-processing: Loading and cleaning raw data.




Multicollinearity Test: Variance Inflation Factor (VIF) analysis.




Model Training & Validation: MaxEnt modelling using dismo, incorporating spatially explicit cross-validation via blockCV to account for spatial autocorrelation.




Evaluation Metrics: Calculation of Area Under the Curve (AUC) and True Skill Statistic (TSS).




Mapping: Generation of Environmental Suitability Index maps and Population at Risk maps using tmap.



Instructions for Reproducibility:





Download both files to a local directory.




Ensure the necessary raw raster files (WorldClim, MODIS) are available in your working directory if running the raster extraction steps from scratch (details provided in code comments).




Run the script niche-modelling-script.R in R or RStudio.



Data Sources:





Dengue Cases: DATASUS (Ministry of Health, Brazil) - https://datasus.saude.gov.br




Climate Data: WorldClim v2.1 - https://www.worldclim.org




Remote Sensing: NASA LP DAAC (MODIS/NDVI) - https://lpdaac.usgs.gov




Population: WorldPop - https://www.worldpop.org
DOI: 10.5281/zenodo.17635403
title: Climate and Environmental Drivers of Dengue Expansion in São Paulo: Data and Code

description: This repository contains the curated datasets and the full R source code used in the manuscript "Climate and environmental drivers of dengue expansion in São Paulo, Brazil: An ecological niche modelling approach", submitted to Remote Sensing Applications: Society and Environment.

This package is designed to ensure full transparency and reproducibility of the Ecological Niche Modelling (ENM) analysis presented in the study.

Contents:

1. Processed Dataset (.csv) This file contains the fully pre-processed data used as input for the MaxEnt models. It aggregates epidemiological, climatic, and demographic variables for all 645 municipalities of São Paulo State for the analyzed epidemic years (2011, 2015, and 2019).





Spatial Resolution: Municipalities (aggregated from raster data as described in the manuscript).




Temporal Resolution: Semi-annual (January–June) averages for environmental variables; Annual incidence rates for dengue.




Variables included:





Municipality Code (IBGE)




Dengue Incidence Rate (cases per 100,000 inhabitants)




Precipitation (mm) - WorldClim v2.1




Maximum & Minimum Temperature (°C) - WorldClim v2.1




Elevation (m) - WorldClim v2.1




Normalized Difference Vegetation Index (NDVI) - NASA/MODIS




Population Density (people/km²) - WorldPop





2. Analysis Script (niche-modelling-script.R) The complete R script required to reproduce the results, figures, and tables. The workflow includes:





Data Pre-processing: Loading and cleaning raw data.




Multicollinearity Test: Variance Inflation Factor (VIF) analysis.




Model Training & Validation: MaxEnt modelling using dismo, incorporating spatially explicit cross-validation via blockCV to account for spatial autocorrelation.




Evaluation Metrics: Calculation of Area Under the Curve (AUC) and True Skill Statistic (TSS).




Mapping: Generation of Environmental Suitability Index maps and Population at Risk maps using tmap.



Instructions for Reproducibility:





Download both files to a local directory.




Ensure the necessary raw raster files (WorldClim, MODIS) are available in your working directory if running the raster extraction steps from scratch (details provided in code comments).




Run the script niche-modelling-script.R in R or RStudio.



Data Sources:





Dengue Cases: DATASUS (Ministry of Health, Brazil) - https://datasus.saude.gov.br




Climate Data: WorldClim v2.1 - https://www.worldclim.org




Remote Sensing: NASA LP DAAC (MODIS/NDVI) - https://lpdaac.usgs.gov




Population: WorldPop - https://www.worldpop.org
DOI: 10.5519/qd.bb8hmmji
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (233969 records)
DOI: 10.15468/dl.4yzeb3
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sabellastarte sanctijosephi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 64 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045339-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17882994
title: Data of Figure for Manuscript "Spin Qubits Candidate in Transition-Metal-Ion doped Halide Double Perovskites"

description: This is the dataset for figures in man text of the manuscript "Spin Qubits Candidate in Transition-Metal-Ion doped Halide Double Perovskites". The dataset is proceesed from the raw data of BRUKER EPR spectrometers and PL spectrometers. It is provided in .csv and .txt form, to make it compatible with standard data analysis software such as Origin, Excel and/or Matlab. The dataset is provided to promote transparency, reliability, and reproducibility in future research related to this study.
DOI: 10.5281/zenodo.17882993
title: Data of Figure for Manuscript "Spin Qubits Candidate in Transition-Metal-Ion doped Halide Double Perovskites"

description: This is the dataset for figures in man text of the manuscript "Spin Qubits Candidate in Transition-Metal-Ion doped Halide Double Perovskites". The dataset is proceesed from the raw data of BRUKER EPR spectrometers and PL spectrometers. It is provided in .csv and .txt form, to make it compatible with standard data analysis software such as Origin, Excel and/or Matlab. The dataset is provided to promote transparency, reliability, and reproducibility in future research related to this study.
DOI: 10.15468/dl.638nsw
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asperarca sagrinata"
 ]
}

 The dataset includes 107 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045340-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/j94s-bn38
title: "Soil Moisture Fall 2009 Casselman Canada"

description: "This is a dataset of surface volumetric soil moisture collected using ThetaProbes. Measurements were taken on bare agricultural fields near Casselman, Ontario, Canada. Data collection occurred in the Fall of 2009 (September 18 to November 8) after fall harvest."
DOI: 10.15468/dl.e78ra2
title: Occurrence Download

description: A dataset containing 30822537 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macro-moth distribution records for the UK from Butterfly Conservation, up to 2019"
 ]
}

 The dataset includes 30822537 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045332-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg5zsc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spirorbis strigatus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045342-251120083545085/datasets/export for details.
DOI: 10.15468/dl.fevvcu
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ensis siliqua"
 ]
}

 The dataset includes 39 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045343-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9h8dp
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudalutarius nasicornis"
 ]
}

 The dataset includes 267 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045341-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30850535.v1
title: Datos de abundancia de artrópodos aéreos capturados mediante trampas multivaso de caída en establecimientos agropecuarios de la región pampeana, Argentina.

description: Datos obtenidos del monitoreo de insectos benéficos aéreos realizado durante dos estaciones (primavera y verano) en 15 establecimientos agropecuarios de la Región Pampeana. El estudio se desarrolló en el marco del relevamiento de biodiversidad funcional en agroecosistemas, con el objetivo de caracterizar la abundancia y riqueza de insectos polinizadores y de grupos seleccionados de insectos depredadores y parasitoides considerados organismos benéficos. El muestreo se llevó a cabo mediante trampas de caída multivaso activas durante 24 horas, instaladas en diferentes elementos del paisaje y ambientes previamente definidos dentro de cada establecimiento productivo. Los artrópodos capturados fueron clasificados e identificados a nivel taxonómico pertinente para cada grupo de estudio, y se estimaron métricas de abundancia y riqueza por sitio y período de muestreo.En total, se recolectaron 120.852 artrópodos a partir de 505 trampas de caída multivaso. El conjunto de datos incluye información sobre la abundancia de los diferentes grupos biológicos registrados, los sitios y ambientes muestreados, la estación del año y la identificación del establecimiento, constituyendo una línea de base para el análisis de la biodiversidad benéfica asociada a sistemas productivos de la Región Pampeana y para el diseño de estrategias orientadas a mejorar la sustentabilidad y resiliencia de los agroecosistemas.
DOI: 10.15468/dl.4jtr2y
title: Occurrence Download

description: A dataset containing 3695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spirobranchus giganteus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3695 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045344-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9x8y8
title: Occurrence Download

description: A dataset containing 428823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Lanius ludovicianus)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1951",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to April",
 "Month is less than or equal to July",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 428823 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045315-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e151921v1-192864
title: Historical Home Mortgage Disclosure Act (HMDA) Data

description: Historical Home Mortgage Disclosure Act (HMDA) Data FilesThe Home Mortgage Disclosure Act (HMDA) is a near census of mortgage lending activity in the United States implemented by the Federal Reserve Board's Regulation C. Under HMDA, financial institutions are required to submit detailed records on loan applications and their ultimate outcomes, viz. origination, denial, application withdrawal, etc. HMDA forms the backbone of analysis into U.S. mortgage markets by providing detailed information about mortgage borrowers, lenders, and properties.<br><br>Since 2006, the HMDA data were published by the Federal Financial Institutions Examination Council (FFIEC) in an accessible format (CSV). Prior to 2006, the data are only available from the National Archives in fixed-width text format. This project seeks to convert the data prior to 2006 into a more accessible delimited format for easier analysis into historical mortgage market trends.<br><br> These data are provided as-is. I will continue to refine these data over time to provide the most accurate data on historical market trends. All codes will be available on my GitHub account.<br><br><b>Important Note:</b> Since the HMDA data include detailed information on borrowers, loan amounts, and property locations (by census tract) it may be possible (albeit incredibly time and resource intensive) to match the HMDA records with publicly available borrower information. Do not do this. It is unethical to conduct research by identifying individuals from these public data. In fact, in downloading these ICPSR clearly states that one should "not use these datasets for investigation of specific RESEARCH SUBJECTS, except when identification is authorized in writing by ICPSR." The HMDA data are collected and published to further the goal of anti-discrimination in U.S. housing markets. Using the data to re-identify borrowers is clearly a violation of this objective.<br>
description: Smallest Geographic Unit: Census Tract
DOI: 10.15468/dl.rxwf37
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spirobranchus latiscapus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 155 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045346-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvbnpm
title: Occurrence Download

description: A dataset containing 104609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Potentilla sterilis (L.) Garcke"
 ]
}

 The dataset includes 104609 records from 352 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108729-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113869
title: MONASTÈRES COPTES_nb_1978_02052

description: Référence : nb_1978_02052<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.bcn5a9
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia pseudoapios Maire & Weiller"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206265-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113868
title: MONASTÈRES COPTES_nb_1978_02051

description: Référence : nb_1978_02051<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.9sg3xv
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echeveria potosina E.Walther"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030821-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113867
title: MONASTÈRES COPTES_nb_1978_02050

description: Référence : nb_1978_02050<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.w5ex27
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bupleurum clarkeanum (H.Wolff) Nasir"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108696-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113866
title: MONASTÈRES COPTES_nb_1978_02049

description: Référence : nb_1978_02049<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.r7wz7t
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lithophila muscoides Sw."
 ]
}

 The dataset includes 29 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233252-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113865
title: MONASTÈRES COPTES_nb_1978_02048

description: Référence : nb_1978_02048<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.wsdfpk
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheiloclinium anomalum Miers"
 ]
}

 The dataset includes 196 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001279-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113864
title: MONASTÈRES COPTES_nb_1978_02047

description: Référence : nb_1978_02047<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.5gqsrr
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bupleurum distichophyllum Wight & Arn."
 ]
}

 The dataset includes 54 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108751-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.113863
title: MONASTÈRES COPTES_nb_1978_02046

description: Référence : nb_1978_02046<br />Site : Galala al-Qibliya<br />Secteur : Deir Amba Bula; Église Saint Paul<br />Type : photographie<br />
DOI: 10.15468/dl.mrtwnp
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "Country is one of (United States of America, United States Minor Outlying Islands, American Samoa, Micronesia (Federated States of), Guam, Marshall Islands, Northern Mariana Islands, Puerto Rico, Palau, Virgin Islands (U.S.))",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Mauremys reevesii (Gray, 1831))"
 ]
}

 The dataset includes 11 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0233271-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5m7nh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is R-Bryophyta - Herbário do Museu Nacional - Bryophyta"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001279-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s42s2u
title: Occurrence Download

description: A dataset containing 31292608 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Magnoliopsida"
 ]
}

 The dataset includes 31292608 records from 1934 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108737-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.