cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6vr656b5dw
title: Unleashing the nutritional potential of Brassica microgreens: A case study on seed priming with Vermicompost

description: Supplementary data for the manuscript "Unleashing the nutritional potential of Brassica microgreens: A case study on seed priming with Vermicompost" published in the journal Food Chemistry.

Supplementary Table S1. Composition of vermicompost biostimulant.
Supplementary Table S2. Raw dataset on the untargeted UHPLC-QTOF/MS metabolomics of vermicompost seed-primed microgreens.
Supplementary Table S3. DAMs derived from the Volcano analysis on cress microgreens.
Supplementary Table S4. DAMs derived from the Volcano analysis on daikon microgreens.
Supplementary Table S5. DAMs derived from the Volcano analysis on mustard microgreens.
Supplementary Table S6. DAMs derived from the Volcano analysis on red cabbage microgreens.
Supplementary Table S7. Pearson correlation coefficients (r cut-off = 0.57) on the rCCA-mediated integration of bioactive compounds and in vitro biological activities of vermicompost seed-primed microgreens.

Supplementary Figure S1. Biomass (g) of 10-day grown Brassicaceae microgreens. Vertical bars indicate standard deviation (n = 4). From top to bottom: cress, daikon, mustard, and red cabbage.
DOI: 10.17632/shhdms5h7n
title: X-ray crystal structure of human ferritin pathogenic mutant LN2 (DNA mutation c.497_498dupTC, causing the amino acid change p.Phe167SerfsX26)
DOI: 10.6084/m9.figshare.21687830.v1
title: Normative database for English loanwords in Croatian

description: ENGRI CROWD: Normative database for 391 most frequent English loanwords in Croatian and their Croatian equivalents rated on valence, arousal, familiarity and concreteness.
DOI: 10.6084/m9.figshare.24426958.v1
title: Data for: Complex patterns of morphological diversity across multiple populations of an urban bird species

description: Urbanization presents a natural evolutionary experiment because selection pressures in cities can be strongly mismatched with those found in species’ historic habitats. However, some species have managed to adapt and even thrive in these novel conditions. When a species persists across multiple cities, a fundamental question arises: do we see similar traits evolve under similar novel environments? By testing if and how similar phenotypes emerge across multiple urban populations, we can begin to assess the predictability of population response to anthropogenic change. Here, we examine variation within and across multiple populations of a songbird, the dark-eyed junco (<i>Junco hyemalis</i>). We measured morphological variations in juncos across urban and non-urban populations in Southern California. We investigated whether the variations we observed are due to differences in environmental conditions across cities. Bill shape differed across urban populations; Los Angeles and Santa Barbara juncos had shorter, deeper bills than non-urban juncos, but San Diego juncos did not. On the other hand, wing length decreased with the built environment, regardless of the population. Southern Californian urban juncos exhibit both similarities and differences in morphological traits. Studying multiple urban populations can help us determine the predictability of phenotypic evolutionary response to novel environments.
DOI: 10.6084/m9.figshare.29062691.v1
title: Open research data

description: It contains GNSS scintillation (BHAO & JEJU) data and DMSP data for research.
DOI: 10.6084/m9.figshare.3860670.v1
title: Supplementary Table 7 from Strong influence of palaeoclimate on the structure of modern African mammal communities

description: Ecological research often assumes that species are adapted to their current climatic environments. However, climate fluctuations over geologic time scales have influenced species dispersal and extinction, which in turn may affect community structure. Modern community structure is likely to be the product of both palaeoclimate and modern climate, with the relative degrees of influence of past and present climates unknown. Here, we assessed the influence of climate at different time periods on the phylogenetic and functional trait structure of 203 African mammal communities. We found that the climate of the mid-Holocene (approx. 6,000 years ago) and Last Glacial Maximum (approx. 22 000 years ago) were frequently better predictors of community structure than modern climate for mammals overall, carnivorans and ungulates. Primate communities were more strongly influenced by modern climate than palaeoclimate. Overall, community structure of African mammals appears to be related to the ecological flexibility of the groups considered here and the regions of continental Africa that they occupy. Our results indicate that the future redistribution, expansion and contraction of particular biomes due to human activity, such as climate and land-use change, will differentially affect mammal groups that vary in their sensitivity to environmental change.
DOI: 10.17632/v77kmkzj88
title: Dataset of HOXB7, HOXB8 and HOXB9 basal RNA expression in breast cancer cell lines

description: The HOXB7, HOXB8 and HOXB9 gene expression profiles in breast cancer are contradictory due to disease complexity and technical issues. The data presented here cover these two points by analyzing the expression of these genes in breast cancer cell lines representative of distinct molecular subtypes using a very sensitive quantification technique, the qPCR. The cell lines analyzed were MCF7, BT474, SKBR3, MDA231, MDA468 and MCF10A representative of Luminal A, Luminal B, HER2+, triple-negative claudin low, triple-negative basal and normal model, respectively. The raw data was accessed by CFX Manager 3.1 software (Bio-Rad) and a threshold line was put into the exponential phase of the amplification curve generating a Cycle Threshold (CT) number for each sample. The CT numbers were transferred to an Excel file, provided in the Raw data folder, to be analyzed using the formula: RATIO= E target^ – (CT sample for the target gene) / E reference^ – (CT sample for the reference gene), in which “E” refers to primer efficiencies previously calculated and GAPDH is the reference gene. The statistical analyses were made with Prism 8 using the unpaired T test with Welch’s correction using the MCF10A cells as reference sample. P-values were considered statistically significant when P≤0.05. The obtained values are provided in Analyzed data folder. Data are presented as the mean ± SD of at least three independent experiments. When more than three experiments are available, we used all replicates to do the analysis or excluded discrepant results but always keeping at least three replicates. The analyzed results showed that HOXB7 tends to be upregulated in all breast cancer cell lines when compared to the normal cell model, while HOXB8 and HOXB9 are significantly upregulated in MCF7, BT474 and MDA231 cells with no significant differences in SKBR3 and MDA468 cells. All genes presented expression levels highly subtype-dependent among different breast cancer cell lines.
DOI: 10.6084/m9.figshare.24134970.v1
title: SWIR XANES SPECTRA RAW.zip

description: Raw Fe-XANES spectra of SWIR melt inclusions and glasses
DOI: 10.6084/m9.figshare.14920767.v2
title: T4 lysozyme, 1-micro second x 8 trajectories

description: <b>T4 lysozyme (164 residues) in water solution, </b><b>12844 molecules (39827 atoms)</b>Force Field: AMBER03 force field and TIP3P water model.Initial structures: an open state = PDB ID 150L / closed state = 2LZM.The concentration of NaCl : 0.150~M.Preparation and equilibration scripts were can be available as follws.https://github.com/fazzz/preparationinitial gro of production run: final_density_stabilization_open.gro, final_density_stabilization_close.grotopologies of production run: t4lw_open.top, t4lw_close.topMD input of production run: production.mdpjob script:production_job.shproduction tpr: production_open.tpr, production_close.tprtrajectories of production run: superimposed_1micros-10ns_open_[A,B].xtc, superimposed_1micros-10ns_close_[A-C].xtcanimation: production_open_[A,B].mp4, production_close_[A-C].mp4
DOI: 10.6084/m9.figshare.28882196.v1
title: Raw data, 3D models, and scripts from "Joint function in marmosets and tamarins: Insights from computational modeling of hip extensor muscles"

description: <b>Data Files Overview</b><br>The necessary files to reproduce the study <i>"Joint Function in Marmosets and Tamarins: Insights from Computational Modeling of Hip Extensor Muscles"</i> by Patricia Berles et al. are provided in the enclosed .zip folder. This comprehensive dataset includes:<br><b>Autodesk Maya Files</b>: Musculoskeletal models of four primate species, enabling the modeling of hip joint extension along with detailed analysis of instantaneous muscle moment arms and muscle strains.<b>Raw Data Table</b>: A complete dataset compiling all relevant measurements and observations.<b>R Script for Error Analysis</b>: A robust script designed to assess and visualize potential errors in the computational modeling.<br>
DOI: 10.6084/m9.figshare.4737841.v1
title: The nature of gold-bearing fluids in Atud gold deposit, Central Eastern Desert, Egypt

description: Electron microprobe analyses of gold and associated ore minerals as well as stable isotope analyses of sulphide and carbonate minerals were performed in order to determine the metal and fluid sources and temperature of the mineralizing systems to better understand the genesis of the Atud gold deposit hosted in the metagabbro–diorite complex of Gabal Atud (Central Eastern Desert, Egypt). The gold can be classified as electrum (63.6–74.3 wt.% Au and 24.6–26.6 wt.% Ag) and is associated with arsenopyrite and As-bearing pyrite in the main mineralization (gold-sulphides) phase within the main mineralized quartz veins and altered host rocks. Based on the arsenopyrite geothermometer, As-contents (29.3–32.7 atom%) in arsenopyrite point to deposition in the Log ƒ<sub>S2</sub> and T ranges of −10.5 to −5.5 and 305–450°C, respectively, during the main mineralizing phase. Based on the <i>δ</i><sup>34</sup>S isotopic compositions of the sulphides, they are originated from magmatic fluids in which the sulphur is either sourced directly from magma or remobilized from the magmatic rocks (gabbroic rocks). On the other hand, calcite formed from fluids having mainly magmatic mixed with variable metamorphic signatures based on its <i>δ</i><sup>13</sup>C and <i>δ</i><sup>18</sup>O values. This work concluded that the gold-bearing ores at Atud deposit have magmatic sources leaching from the country intrusive rocks during water/rock interactions then remobilized during a metamorphic event. Therefore, the Atud gold deposit is classified as an intrusion-related gold deposit, in which the gabbro–diorite host intrusion acted as the source of metals which were mobilized and deposited as a result of the effects of NW–SE shearing.
DOI: 10.17632/h4gb998bs8
title: Replication Pack for "Monetary Policy and Fragility in Corporate Bond Mutual Funds"

description: Replication files and pseudo data for Kuong, O'Donovan, and Zhang, 2024, "Monetary Policy and Fragility in Corporate Bond Mutual Funds" , Journal of Financial Economics
DOI: 10.6084/m9.figshare.22294690.v2
title: Hydrodynamic spin orbit coupling in asynchronous optically riven micro-rotors

description: This zip file contains a complete dataset for figures in the main manuscript.
DOI: 10.6084/m9.figshare.28911443.v1
title: CT scans

description: CT scan images of column samples acquired at sites in Denmark for the Titan Project
DOI: 10.6084/m9.figshare.14268245.v1
title: Comprehensiveness, readability, and reliability of Brazilian websites available for lay people’s guidance on adenotonsillectomy

description: Abstract Introduction: Adenotonsillectomy is an invasive surgical procedure, which may encourage the search for information by the lay population through online search engines. The quality of this information, however, requires an evaluation due to the wide diversity of the available content. Objective: To evaluate the quality, in terms of ethical principles, readability and comprehensiveness, of the most accessed websites concerning guidance to parents/guardians related to their children’s recommended adenotonsillectomy. Methods: The websites mentioned on the first 10 pages obtained after the search using “removal”, “tonsils” and “adenoids” as keywords, after applying the inclusion and exclusion criteria, were selected. All were assessed using the Flesch Readability Index and Health on the Net Code tools, in addition to an evaluation of the content by two independent evaluators. The data were described, and the inter-rater agreement was calculated by the Kappa coefficient. Results: 34 websites were found, of the 100 assessed ones, which met the inclusion and exclusion criteria using the Google and Yahoo! Tools. Sixteen (47%) pages were considered reasonably difficult/difficult to read according to the Flesch Readability Index. Most of them met less than half of the analyzed ethical requirements according to the Health on the Net Code, and the overall comprehensiveness average was considered insufficient. Conclusion: A deficit of overall quality (comprehensiveness, readability, and ethical principles) was demonstrated for the websites available to parents or guardians about the adenotonsillectomy procedure in children.
DOI: 10.17632/jynj857t3z
title: Supplemental material - Unraveling the immune and metabolic changes associated with metritis in dairy cows

description: The objective was to unravel the peripartum immune and metabolic changes associated with metritis in Holstein cows. Holstein cows (n=128) had blood collected at -14, 0, 3, and 7 days relative to parturition (DRP). Flow cytometry was used to evaluate blood leukocyte counts, proportions, and activation. Total cells, live cells (LiveDead-), single cells, monocytes (CD172α+/CD14+), polymorphonuclears (PMN; CD172α+/CD14-/SSChigh), B-cells (CD21+/MHCII+), CD4+ T-cells (CD4+), CD8+ T-cells (CD8+), and γδ T-cells (γδTCR+) were evaluated. CD62L and CD11b were used as markers of cell activation. Major histocompatibility complex class II was used as a marker of antigen presentation in monocytes. A MILLIPLEX Bovine Cytokine/Chemokine 08-plex kit was used to evaluate plasma concentrations of interferon-γ, Interleukin (IL)-1α, IL-1β, IL-4, IL-6, IL-8, IL-10, and tumor necrosis factor-α. The body weight (BW) change prepartum was calculated as the difference between calving BW and prepartum BW divided by the number of days between measurements. Plasma fatty acids (FA) were measured at -14 and 0 DRP using untargeted gas chromatography with time-of-flight mass spectrometry. Data were analyzed by ANOVA for repeated measures. Cows that developed metritis (n= 57) had greater prepartum BW, prepartum BW loss, and greater FA concentrations at calving. Plasma FA at calving was positively correlated with IL-1β. Cows that developed metritis had persistent systemic inflammation, which was demonstrated by greater B-cell activation, greater pro-inflammatory cytokine concentrations, and greater cell damage pre- and postpartum. Postpartum, we observed greater polymorphonuclear cell activation and extravasation but lesser monocytes and CD4+ T-cells activation and extravasation, which suggests postpartum immune tolerance. Greater prepartum adiposity in cows that developed metritis may lead to systemic inflammation pre- and postpartum and immune tolerance postpartum, which may lead to failure to prevent bacterial infection, and development of puerperal metritis.
DOI: 10.17632/t4z3vp9dnk
title: Patella Bone (Knee Lateral) Osteoarthritis

description: Knee Osteoarthritis is a prevalent disease that affects people worldwide. This dataset is taken from a hospital. The whole X-ray images have been cropped and the part of image containing Patella bone only is kept in the dataset. The osteophytes are better visible in Patella which makes this dataset suitable for Osteoarthritis detection.
DOI: 10.6084/m9.figshare.14191796.v1
title: Keloid 2019-Dataset.pzfx

description: Minimal underlying dataset for Project: Strontium-90 brachytherapy following intralesional triamcinolone and 5-fluorouracil injections for keloid treatment: A randomized controlled trial<b></b>
DOI: 10.6084/m9.figshare.24720780.v1
title: Pollinators enhance the production of a superior strawberry – A global review and meta-analysis

description: Strawberry (<i>Fragaria x ananasa</i> Duch.) is the most economically important soft fruit worldwide. While self- and wind-pollination is possible for strawberry, without biotic pollination (animal pollinators, including artificial pollination by humans) rate of strawberry flowers rarely exceeds 60% and thus fruit production is decreased. At a time of widely recognized decline of pollinators and increasing global demand for balanced food, we need a comprehensive understanding of the worldwide valuation of these ecosystem services. In this paper, we use a transparent and systematic review process to detect gaps in the available literature. By applying multilevel meta-analytic models, we quantified the contribution of biotic pollinators and different pollinator types to strawberry fruits. Our review showed that research on strawberry pollination is clearly concentrated in European countries, with limited information for Asia – the largest strawberry producer. Additionally, we detected disproportions across research topics, stressing the need for further research on pollinator preferences between strawberry cultivars and the occurrence of managed and wild bee communities. The overall estimate of pollination benefit to strawberry crops is on average a 25% reduction in fruit weight for plants not receiving a biotic pollination treatment. This benefit is similar regardless of the pollinating species. The mean amount globally (2011–2020) receivable by producers from purchasers due to biotic pollination is $5.36 billion per year. Moreover, we demonstrated that strawberry plants that are dependent on self- or wind-pollination set on average 43% fewer seeds (fertilized achenes) than biotically pollinated plants. Such a huge reduction in seed set can cause fruit deformation and reduce the commercial value of strawberries. Together, these findings indicate the critical role of biotic pollination in strawberry production and quality. To ensure pollination services in strawberry farms and produce the best-quality fruits, growers should take action to sustain healthy pollinator communities and utilize them with the optimal cultivar.
DOI: 10.6084/m9.figshare.3113488.v1
title: Pan-Grass Syntenic Gene Set (sorghum referenced)

description: Syntenic gene lists for sorghum, both maize subgenomes, setaria italica, setaria viridis, oropetium, rice, and brachypodium. Initial homology search conducted with lastz. Syntenic regions identified using QuotaAlign (https://github.com/tanghaibao/quota-alignment). One to one gene pair identification performed using the method describe in Zhang et al 2017. <br>Please cite:<br>Zhang Y, Ngu DW, Carvalho D, Liang Z, Qiu Y, Roston RL, Schnable JC. (2017) “Differentially regulated orthologs in sorghum and the subgenomes of maize.” The Plant Cell doi: 10.1105/tpc.17.00354 bioRxiv preprint doi: 10.1101/120303
DOI: 10.6084/m9.figshare.5590396.v1
title: Fossil Bird Track, Mammoth Site of Hot Springs

description: 3D model of small bird track from the Hot Springs mammoth site, originally described by Falkingham et al 2010.<br>Dataset includes 6 photos and photogrammetric model.<br>Photos were not taken with photogrammetry in mind, so scale bar moves between images, and there aren't many.
DOI: 10.17632/4ts8z2fcn6
title: Pro and anti-system attitudes in Spanish-speaking countries

description: This research aims to determine the attitude of people from various Spanish-speaking countries towards the political system, and whether said attitude reflects the specified anti-system attitude.
Furthermore, it is intended to verify whether this attitude is presented concomitantly with the traits of the so-called Dark Personality (Machiavellianism, subclinical narcissism, subclinical psychopathy and everyday sadism), with social values (materialistic, postmaterialistic, religiosity, and hedonistic), with altruism, and with social desirability (Clemente and Espinosa, 2020; Espinosa and Clemente, 2020).

The work hypotheses are:
- H1: People will tend to divide into two categories, those who understand that democracy should be based on the representation of the three powers, and those who understand that democracy is only governmental power.
- H2: It is possible to create a scale that determines which people have pro-system and anti-system attitudes.
- H3: There will be a relationship between the dark personality variables and the attitude towards the political system, such that those who defend the anti-system perspective will present higher levels of the four Dark Personality traits than those who defend the existence of tripartite power (pro -system).
- H4: The predominant values among anti-system people will be post-materialist, while for pro-system people they will be materialist.
- H5: Social desirability will be higher in pro-system subjects, while scores on the altruism variable will be higher in anti-system subjects.
DOI: 10.17632/fbs9mgmh4y
title: Cybercrime Awareness among Saudi Nationals: Dataset

description: This survey was based on an online platform, namely Google forms. To ensure data confidentiality, anonymous participation was enabled, and the results were stored in a local database for further analysis. During preprocessing, participants were asked if they agreed or disagreed with participating in the survey. If they agreed, they could access the questionnaire by logging in to Google forms using their Google accounts. They were allowed to submit their answers only one time. Following this phase, all responses were stored locally in order to process the data and further analyze the results. To perform these tasks, the software R studio was used. Data Collection Since the aim of the study is Saudi awareness, we used two methods. First, we browsed public and private university websites in Saudi Arabia, then created a list of faculty email addresses to contact and inform faculty members about our project and goals and provide an invitation to participate. The faculty members ranged from lecturers and teaching assistants to professors. Second, we utilized the WhatsApp application to locate people known to meet the requirements and asked them to forward the invitation to their friends, family members and colleagues who also met the requirements. We avoided posting the survey on social media to assure the validity of participants.