cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25452/figshare.plus.25696620.v1
title: Skin sc-RNASeq from seven body sites (face, scalp, axilla, palmoplantar, arm, leg, and back)

description: This sc-RNAseq dataset is composed of samples from 96 skin biopsies from seven body sites (face, scalp, axilla, palmoplantar, arm, leg, and back). The skin biopsies were separated into epidermis and dermis before dissociated and enriched for various cell fractions (keratinocytes, fibroblasts, and endothelial cells) and immune cells (myeloid and lymphoid cells) to up sample rare cell types. In total, across body sites, 274,834 cells were profiled, including 96,194 keratinocytes. <i>Seurat v3.0.</i> was utilized to normalize, scale, and reduce the dimensionality of the data. Low quality cells containing less than 200 genes per cell as well as greater than 5,000 genes per cell were filtered out. Cells containing more mitochondrial genes than the permitted quantile of 0.05 were removed. Ambient RNA was removed using R package <i>SoupX</i> v1.6.2. Doublets were removed using <i>scDblFinder</i> v1.12.0. Principal components (PC) were obtained from the topmost 2,000 variable genes, and the Uniform Manifold Approximation and Projection (UMAP) dimensional reduction technique was applied to the 30 topmost variable PC-reduced dataset. Batch effect correction was performed utilizing <i>harmony</i> v1.0, using donor as batch. After batch correction, cells were clustered using shared nearest neighbor modularity optimization-based clustering. Cluster marker genes were identified with <i>FindAllMarkers</i>; cluster corresponding cell type was identified by comparing marker genes to curated cell-type signature genes. Differential expression by keratinocyte subtype was performed with Seurat (v4.3.0) <i>FindMarkers</i> function by comparing keratinocyte subtype to non-keratinocyte clusters. The log fold-change of the average expression between a keratinocyte subtype cluster compared to the rest of clusters is utilized as keratinocyte-subtype gene expression statistic. Biopsy sample details, curated cell-type signature genes and processed Seurat object are provided herein. Raw data are available in SRA (id PRJNA1054546)
DOI: 10.3535/5pz-6ya-dcs
title: Erettopterus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r6y-w4b-04c
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20227509.v1
title: SwitchFuzz

description: The dataset of SwitchFuzz
DOI: 10.3535/2am-k51-atx
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z40-xbx-x0r
title: Erettopterus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14399441.v1
title: mRNA and DNAm references for breast

description: The data contains a 2907-marker expression reference and a 343-marker DNAm reference for Breast, which can be used to estimate cell type fractions of basal cells, endothelial cells, fat cells, fibroblasts, luminal cells, lymphocytes and macrophages in Breast tissue with EpiSCORE framework.<br>Breast_Expref.csvA scRNAseq expression reference for Breast. Each row is a marker gene (in gene symbol) and each column is a cell type. For each marker gene, the value of the reference matrix is the median expression level for each type of cells in scRNAseq data.<br>Breast_Mref.csvA DNAm reference for Breast. Each row is a marker gene (in entrezID) and each column is a cell type. The last column is the weight for each marker. The value of the matrix is the imputed DNAm level from expression reference.
DOI: 10.6084/m9.figshare.7068305.v1
title: Virtual Observatory Data (CHAMP and Swarm) version 0101

description: Virtual Observatory datasets based on CHAMP and Swarm magnetospheric data. Produced by Chris Finlay and Magnus Hammer from Technical University of Denmark (DTU) and published with their permission.
DOI: 10.3535/fxn-bam-wt7
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kf7-rnk-8q1
title: Erettopterus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2vy-g9r-8zt
title: Gyractis (Bunodes)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20009265.v1
title: Production, composition and processing of milk from ewes fed soybean seeds

description: The objective of this study was to evaluate production, chemical composition, and estimates of total solids and fatty acid profile of milk from 1/2 Lacaune × 1/2 Ile de France ewes fed control and soybean seeds-supplemented diets. Additionally, Roquefort type cheese was also produced and subjected to sensory analysis. Twenty four 1/2 Lacaune × 1/2 Ile de France ewes were divided into three groups and fed a control diet and diets containing 70 and 140 g kg-1 soybean as fed, during the lactation period. The remainder milk was used to produce Roquefort cheese. The experimental design was completely randomized, with three treatments (0, 70, and 140 g of soybean kg-1 as fed) and eight repetitions. The diets did not affect significantly the performance (56.72 kg post-birth weight; 62.63 kg weight after 56 lactation days; 2.03 kg day-1 dry matter intake; 0.11 kg average daily weight gain), or milk production (443.61 mL day-1), density (1.035 g mL-1), acidity (19.33 °D), and pH (6.41) of lactating ewes. Milk chemical composition was (per 100 g of milk): 14.86 g total solids, 9.84 g solids not fat, 4.98 g protein, 4.14 g casein, 5.03 g fat, and 4.11 g lactose. Saturated (72.07 g/100 g of fat), monounsaturated (21.48 g/100 g of fat) and polyunsaturated (6.37 g/100 g of fat) fatty acids were not significantly different. However, the polyunsaturated linoleic acid was significantly different in the milk from ewes fed the diet containing 140 g of soybean kg-1 as fed (5.58 g/100 g of fat) compared with those fed the control diet and 70 g of soybean kg-1 as fed (3.82 g/100 g of fat). The Roquefort type cheese had excellent acceptance by the panel. The highest cheese yield was obtained with the milk from ewes fed diets containing 70 g kg-1 soybean as fed. A diet containing 140 g kg-1 soybean as fed is recommended as it leads to greater linoleic acid content in the ewes milk, improving the lipid fractions and nutritional quality of the milk.
DOI: 10.6084/m9.figshare.23850000.v1
title: Data of the influence of underground water on the seismic response of the nuclear power plant soil-structure system

description: These data files are generated during the numerical simulation process.
DOI: 10.6084/m9.figshare.3376117.v1
title: Visualización de una serie de tiempo de temperatura media en la ciudad de Maracaibo, estado Zulia, Venezuela

description: Ejemplo ilustrativo del uso un gráfico radial en R (paquete plotrix) para mostrar las temperaturas a lo largo del año y durante varios años. Basado en datos de la estación climática 804070, serial 1015, ubicada en la ciudad de Maracaibo, estado Zulia, Venezuela para el periodo 1953 al 2012.
DOI: 10.3535/cml-dhk-y2m
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l1p-6p8-6j2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/083-r6j-wpz
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9t1-bpn-wyh
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12319571.v1
title: Phenotypic analysis of tumor-infiltrating lymphocytes from non-small cell lung cancer and their potential application for adoptive cell therapy

description: Adoptive cell therapy (ACT) of tumor-infiltrating lymphocytes (TILs) has demonstrated clinical benefits in metastatic melanoma treatment. However, the clinical application of TILs produced by a widely used standard protocol from non-small cell lung cancer (NSCLC) can be quite challenging because of the limited clinical benefits. A comprehensive phenotypic knowledge of TILs obtained from NSCLC is important for the development and improvement of personalized TIL therapy for NSCLC patients. In this study, we successfully expanded TILs from 141 NSCLC tissues which can be used in clinical ACT after expansion by a rapid expansion protocol (REP). Our study indicates that the clinicopathological characteristics of patients have considerable impacts on the phenotype of <i>in vitro</i> TIL culture products. Different culture conditions are necessary for patients with different clinical features. Specific manipulations before REP expansion are required depending on the different phenotypes of TIL cultures (e.g. depletion of immune-suppressive γδT cells). With these optimizations, next-generation TIL therapy may become a treatment alternative for NSCLC patients in the future.
DOI: 10.3535/28n-ywe-hhw
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7qc-6dq-t11
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3734329_d4.v1
title: Additional file 2: Table S1. of Prediction of reversible disulfide based on features from local structural signatures

description: Physical-chemical properties of amino acids (XLS). (XLSX 9 kb)
DOI: 10.3535/wkc-vaa-4k6
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12236810.v1
title: IVIM.bval

description: IVIM Acquisition: 149x149x84x49
DOI: 10.6084/m9.figshare.13313276.v1
title: The gamma response to colour hue in humans: evidence from MEG

description: Data from the publication: "The gamma response to colour hue in humans: evidence from MEG", Plos One, 2021<br>Each file contains virtual sensor data for an individual participant from one of the two experiments reported in the paper. <br>The first column in each file contains the time (relative to stimulus onset) of the corresponding sample in seconds. Each subsequent column contains data from an individual trial, with the first row giving the stimulus condition for the corresponding trial. (Note that due to the way the data was pre-processed, trials are grouped by condition rather the being stored in their original presentation order.) <br>The virtual sensor data contained in the files is unitless due to the beamformer weights having been normalised. <br>In experiment 1 there are four conditions of colour (red, green, blue, purple) and one condition in which a grating was presented (labeled simply as 'grating').<br>In experiment 2 conditions are labelled first by the level of colour contrast (either high or low) and the colour pair (r = red, b = blue, g = green). The order that the colours were presented in each trial is reflected by the order of the letters in the condition label (e.g. rb = red-blue starting with red as the first colour; br = red-blue starting with blue). There are eight conditions (x 2 orders) in total.<br>Trials excluded due to artefacts are not included in the datasets. This means that the number of trials per participant (and per condition for each participant) are not identical across trials.
DOI: 10.3535/fx3-p9x-05v
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pw4-r2p-mj4
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12909395.v1
title: Dataset MTX - Eryfolate.csv

description: This is a dataset of 43 pediatric acute lymphoblastic leukemia patients in which we analysed consecutive methotrexate and folate levels. <b><br></b><b>Background </b>After High-Dose Methotrexate (HD-MTX), folinic acid rescue therapy (Leucovorin) is administered to reduce side effects in pediatric acute lymphoblastic leukemia (ALL) patients. Leucovorin and MTX are structural analogues, possibly competing for cellular transport and intracellular metabolism. We hypothesize that Leucovorin accumulates during consecutive courses, which might result in a lower MTX uptake. <b>Methods </b>We prospectively measured red blood cell (RBC) folate and MTX levels during four HD-MTX and Leucovorin courses in 43 patients treated according the DCOG ALL-11 protocol with 2-weekly HD-MTX (5 g/m<sup>2</sup>/dose) and Leucovorin (15 mg/m<sup>2</sup>/dose) using LC-MS/MS. We estimated a linear mixed model to assess the relationship between these variables over time. <b>Results </b>Both RBC MTX-PG and folate levels increased significantly during protocol M. MTX-PG<sub>2-5</sub> levels increased most substantially after the first two HD-MTX courses (until median 113.0 nmol/L, IQR 76.8-165.2) after which levels plateaued during the 3<sup>d</sup> and 4<sup>th</sup> course (until median 141.3 nmol/L, IQR 100.2-190.2). In parallel, folate levels increased most substantially after the first two HD-MTX courses (until median 401.6 nmol/L, IQR 163.3-594.2) after which levels plateaued during the 3<sup>d</sup> and 4<sup>th</sup> course (until median 411.5 nmol/L, IQR 240.3-665.6). The ratio folate/MTX-PG decreased significantly over time, which was mostly due to the relatively higher increase (delta) of MTX-PG. <b>Conclusion </b>These results suggest that the increase in RBC folate levels does not seem to have a large effect on RBC MTX levels. Future studies, assessing competition of Leucovorin and MTX on other cellular mechanisms which might negatively affect treatment efficacy, are necessary.
DOI: 10.6084/m9.figshare.22301110.v1
title: Food intake data.xlsx

description: The is the raw data for the ms " <strong>Context-dependent effects of thermal acclimation on physiological correlates of animal personality in Asiatic toads</strong>"
DOI: 10.3535/ads-c8x-2gq
title: Aethilla Hewitson, 1868

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/js4-pn5-lr6
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23267852.v2
title: m3gnet_mpf

description: m3gnet dataset
<br>
https://github.com/materialsvirtuallab/m3gnet
<br>
168917 samples to train, 9378 samples to evaluate, and 9389 samples to test
DOI: 10.3535/ek8-ebk-766
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rqa-tz8-8g5
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hz9-hqj-0ql
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w9h-1kd-7f2
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5398537.v3
title: Comparison chart of Vai script

description: This dataset is a comprehensive diachronic comparison of the Vai script of Liberia, as derived from sixteen sources dated between 1834 and 2005. It can be viewed as a webpage at https://ftp.shh.mpg.de/kelly/Vai.html.<br><br>Please note that a subset of these graphemes have been traced as svg vector images. You can download them here: https://doi.org/10.6084/m9.figshare.5897158.v1<br>The same graphemes with a black background can be found here: https://doi.org/10.6084/m9.figshare.5901337.v1
DOI: 10.3535/ppd-c4t-c7j
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3zz-5x1-hx3
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a4v-71v-tr3
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14864904.v1
title: Brexit.xls

description: data
DOI: 10.3535/dhh-z8g-1s2
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tcd-lj4-e7h
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20347383.v1
title: Table 4. Post hoc analysis of bowing ROM means across three groups of prayer quality changes.

description: Post hoc analysis of bowing ROM means across three groups of prayer quality changes.
DOI: 10.3535/9sz-007-9qz
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l66-fjz-fb7
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28500854.v1
title: Experimental data supporting "Environmental photosensitizers can exhibit enhanced actinic absorption in microhydrated clusters compared to solution," DOI: 10.1016/j.ijms.2025.117431.

description: Abstract: Brown carbon chromophores at environmental air-water interfaces often act as photosensitizers that absorb sunlight and subsequently transfer energy to nearby molecules, initiating a wide variety of chemical reactions. Despite their importance to understanding daytime chemistry at these air-water interfaces, little is known about the role of the solvation environment on the photophysical properties of these photosensitizers. In this work, we present a joint experimental-theoretical studyof the vibrational and photophysical properties of microhydrated protonated and deprotonated 4-benzoylbenzoic acid (4-BBA), a key model system for environmental photosensitizers. We find that for protonated 4-BBAH+∙(H2O)0-1, representing photosensitizers in very acidic conditions, a single bright state dominates the UV–Vis spectrum between 280 and 400 nm. Comparing the experimental UV–Vis spectra and quantum chemistry-predicted spectra of 4-BBAH+∙(H2O)0-2, we find that the degree of microhydration has little effect on the UV–Vis spectra or the orbitals of the dominant feature. For deprotonated 4-BBA‒, representing photosensitizers in basic conditions, quantum chemistry calculations predict that the UV–Vis spectra are ∼3x weaker in intensity than the brightest 4-BBAH+∙(H2O)0-1 features and were not observed experimentally. Quantum chemistry calculations predict one dominant UV–Vis feature is present in the spectra of 4-BBA‒∙(H2O)0-2, which exhibit minor shifts with degree of microhydration. While 4-BBA in bulk solution over a range of pH values has relatively weak absorption within the solar actinic region, we show that microhydrated 4-BBA has bright transitions within the actinic region. This indicates that the complex structure of environmental air-water interfaces can shift the absorption maximum of photosensitizers into the actinic region for enhanced absorption of sunlight and subsequent enhancement of photosensitizer-driven reactions.
DOI: 10.6084/m9.figshare.5016350.v2
title: Revistas latinoamericanas de comunicación

description: Base de datos asociada al artículo: "Revistas Científicas de comunicación de América Latina incluidas en bases de datos bibliográficas comprensivas y de acceso abierto". En prensa: Revista<i> Comunicación y Sociedad</i>.
DOI: 10.3535/rw5-7dx-eag
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vrm-tbl-95p
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fcc-nx3-y7f
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kg1-4mr-5hd
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21317439.v1
title: Differentially expressed genes of C. semilaevis F_muscle-vs-M_muscle

description: Differentially expressed genes between female and male muscles of half-smooth tongue sole
DOI: 10.3535/xye-lxk-fr4
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zhs-pxj-qrm
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d99
title: Ex3R43C3 GluR2-6 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.25458916.v1
title: Data Chemotherapy

description: Skin, hair, and nail (SHN) manifestations are a relatively common adverse effect of chemotherapy that affects the quality of life of cancer patients. However, little is known about their incidence among cancer patients who received anthracycline-based chemotherapy and their associated risk factors.
DOI: 10.3535/l1h-baj-2en
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ttg-07v-zd8
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7987292.v2
title: Dataset S1 from Convergent evolution in <i>Arabidopsis halleri</i> and <i>Arabidopsis arenosa</i> on calamine metalliferous soils.

description: It is a plausible hypothesis that parallel adaptation events to the same environmental challenge should result in genetic changes of similar or identical effects, depending on the underlying fitness landscapes. However, systematic testing of this is scarce. Here we examine this hypothesis in two closely related plant species, <i>Arabidopsis halleri</i> and <i>Arabidopsis arenosa</i>, which co-occur at two calamine metalliferous (M) sites harbouring toxic levels of the heavy metals zinc and cadmium. We conduct individual genome resequencing alongside soil elemental analysis for 64 plants from eight populations on M and non-metalliferous (NM) soils, and identify genomic footprints of selection and local adaptation. Selective sweep and environmental association analyses indicate a modest degree of gene as well as functional network convergence, whereby the proximal molecular factors mediating this convergence mostly differ between site pairs and species. Notably, we observe repeated selection on identical single nucleotide poly-morphisms in several <i>A. halleri</i> genes at two independently colonized M sites. Our data suggest that species-specific metal handling and other biological features could explain a low degree of convergence between species. The parallel establishment of plant populations on calamine M soils involves convergent evolution, which will probably be more pervasive across sites purposely chosen for maximal similarity in soil composition.This article is part of the theme issue ‘Convergent evolution in the genomics era: new insights and directions’.
DOI: 10.3535/9ew-07c-03g
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.