cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6505223
title: Additional file 4 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Multiple sequence alignment of Ty4 and Tsu4 elements in Saccharomyces sensu stricto species. Multiple sequence alignment of all full-length Ty4/Tsu4 elements from 12 strains of S. cerevisiae and S. paradoxus with PacBio assemblies from Yue et al. [13] plus all complete or nearly-complete Tsu4 elements identified in Saccharomyces WGS assemblies at NCBI (&gt; 80% coverage and &gt; 80% identity relative to the Tsu4 query sequence from S. uvarum). Fasta files of Ty4/Tsu4 sequences from all strains plus the Ty4 and Tsu4 query sequences were concatenated together and aligned using MAFFT (version 7.273-e; options: –thread 28) [52]. (TXT 335 kb)
DOI: 10.6084/m9.figshare.6505223.v1
title: Additional file 4 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Multiple sequence alignment of Ty4 and Tsu4 elements in Saccharomyces sensu stricto species. Multiple sequence alignment of all full-length Ty4/Tsu4 elements from 12 strains of S. cerevisiae and S. paradoxus with PacBio assemblies from Yue et al. [13] plus all complete or nearly-complete Tsu4 elements identified in Saccharomyces WGS assemblies at NCBI (&gt; 80% coverage and &gt; 80% identity relative to the Tsu4 query sequence from S. uvarum). Fasta files of Ty4/Tsu4 sequences from all strains plus the Ty4 and Tsu4 query sequences were concatenated together and aligned using MAFFT (version 7.273-e; options: –thread 28) [52]. (TXT 335 kb)
DOI: 10.6084/m9.figshare.6505214
title: Additional file 3 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Summary of complete or nearly-complete Tsu4 sequences identified in Saccharomyces whole genome assemblies at NCBI. Accession number and coordinates of 12 complete or nearly-complete Tsu4 elements identified by BLAST in 392 Saccharomyces (taxid: 4930) WGS assemblies at NCBI that had high similarity (&gt;â 80% coverage and &gt;â 80% identity) to the Tsu4 query sequence (Genbank: AJ439550). (CSV 1.77 kb)
DOI: 10.6084/m9.figshare.6505214.v1
title: Additional file 3 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Summary of complete or nearly-complete Tsu4 sequences identified in Saccharomyces whole genome assemblies at NCBI. Accession number and coordinates of 12 complete or nearly-complete Tsu4 elements identified by BLAST in 392 Saccharomyces (taxid: 4930) WGS assemblies at NCBI that had high similarity (&gt;â 80% coverage and &gt;â 80% identity) to the Tsu4 query sequence (Genbank: AJ439550). (CSV 1.77 kb)
DOI: 10.6084/m9.figshare.6505205
title: Additional file 2 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Coordinates of Ty elements in S. cerevisiae and S. paradoxus PacBio assemblies. Zip file of BED-formatted genome annotations for 12 strains of S. cerevisiae and S. paradoxus with PacBio assemblies. Full-length elements (f), truncated elements (t), or solo LTRs (s) were identified using a RepeatMasker (version 4.0.5) based strategy and a custom library of Ty elements from [11] supplemented with S. paradoxusTsu4. (ZIP 91.1 kb)
DOI: 10.6084/m9.figshare.6505205.v1
title: Additional file 2 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Coordinates of Ty elements in S. cerevisiae and S. paradoxus PacBio assemblies. Zip file of BED-formatted genome annotations for 12 strains of S. cerevisiae and S. paradoxus with PacBio assemblies. Full-length elements (f), truncated elements (t), or solo LTRs (s) were identified using a RepeatMasker (version 4.0.5) based strategy and a custom library of Ty elements from [11] supplemented with S. paradoxusTsu4. (ZIP 91.1 kb)
DOI: 10.6084/m9.figshare.6505193
title: Additional file 1 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Ty content in S. cerevisiae and S. paradoxus PacBio assemblies. Numbers of full-length elements (both LTRs and internal region present with &gt;â 95% coverage of canonical internal region), truncated elements (internal region present with
DOI: 10.6084/m9.figshare.6505193.v1
title: Additional file 1 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

description: Ty content in S. cerevisiae and S. paradoxus PacBio assemblies. Numbers of full-length elements (both LTRs and internal region present with &gt;â 95% coverage of canonical internal region), truncated elements (internal region present with
DOI: 10.6084/m9.figshare.6505160
title: Additional file 3: of Glucocorticoid-dependent REDD1 expression reduces muscle metabolism to enable adaptation under energetic stress

description: Individual data values for all experiments in an Excel file. Data sets are sorted by figure. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.6505160.v1
title: Additional file 3: of Glucocorticoid-dependent REDD1 expression reduces muscle metabolism to enable adaptation under energetic stress

description: Individual data values for all experiments in an Excel file. Data sets are sorted by figure. (XLSX 35 kb)
DOI: 10.5281/zenodo.4006016
title: Genome sequencing of P. tricornutum mother and daughter cultures derived from single cell and separated by 30 days of proliferation - processed datasets

description: <strong>Genome sequencing of <em>P. tricornutum</em> mother and daughter cultures derived from single cell and separated by 30 days of proliferation - processed datasets.</strong> Raw data for this experiment are available at https://www.ncbi.nlm.nih.gov/bioproject/PRJNA658224. <strong>Please note that the naming of files differs from the general description on /www.ncbi.nlm.nih.gov/bioproject website and in related publication:</strong> Instead of MC1-3, the processed datasets are labelled Sc1-3 Instead of DC1.1; DC1.2 and DC1.3, the processed datasets are labelled Sc11, Sc12 and Sc14 respectively Instead of DC2.1; DC2.2 and DC2.3, the processed datasets are labelled Sc21, Sc22 and Sc24 respectively Instead of DC3.1; DC3.2 and DC3.3, the processed datasets are labelled Sc31, Sc32 and Sc33 respectively <strong>Available datasets: </strong> <em>.bam</em> files with ILLUMINA reads aligned to the reference P. tricornutum v2 genome used for SNP calling <em>.vcf</em> files for individual samples with SNPs called using GATK3.7.0 <em>joint_genotyping_cohort.vcf</em> file with SNPs called jointly for all samples using GATK4.2.1 <strong>Description of the experiment:</strong> Whole-genome Illumina sequencing of mother and daughter cultures derived from single cell to reveal genomic changes occurring within 30 day time frame. Three independent single cells were isolated from CCAP 1055/1 culture (sample label: Pt1) to start mother cultures (MC1; MC2; MC3 . On day 30 after mother culture isolation (T1 time point), three daughter cells were isolated from each mother culture forming cultures DC11-DC33. Part of mother cultures and CCAP 1055/1 culture were harvested at T1 (Samples: Pt1T1; MC1T1; MC2T1; MC3T1) . After another 30 days (T2 time point), all cultures were harvested (Samples: Pt1T2; mother culture MC1T2 and respective daughter cultures DC11, DC12 and DC13 ; mother culture MC2T2 and respective daughter cultures DC21, DC22 and DC23; mother culture MC3T1 and respective daughter cultures DC31, DC32, DC33).
DOI: 10.5281/zenodo.4006015
title: Genome sequencing of P. tricornutum mother and daughter cultures derived from single cell and separated by 30 days of proliferation - processed datasets

description: <strong>Genome sequencing of <em>P. tricornutum</em> mother and daughter cultures derived from single cell and separated by 30 days of proliferation - processed datasets.</strong> Raw data for this experiment are available at https://www.ncbi.nlm.nih.gov/bioproject/PRJNA658224. <strong>Please note that the naming of files differs from the general description on /www.ncbi.nlm.nih.gov/bioproject website and in related publication:</strong> Instead of MC1-3, the processed datasets are labelled Sc1-3 Instead of DC1.1; DC1.2 and DC1.3, the processed datasets are labelled Sc11, Sc12 and Sc14 respectively Instead of DC2.1; DC2.2 and DC2.3, the processed datasets are labelled Sc21, Sc22 and Sc24 respectively Instead of DC3.1; DC3.2 and DC3.3, the processed datasets are labelled Sc31, Sc32 and Sc33 respectively <strong>Available datasets: </strong> <em>.bam</em> files with ILLUMINA reads aligned to the reference P. tricornutum v2 genome used for SNP calling <em>.vcf</em> files for individual samples with SNPs called using GATK3.7.0 <em>joint_genotyping_cohort.vcf</em> file with SNPs called jointly for all samples using GATK4.2.1 <strong>Description of the experiment:</strong> Whole-genome Illumina sequencing of mother and daughter cultures derived from single cell to reveal genomic changes occurring within 30 day time frame. Three independent single cells were isolated from CCAP 1055/1 culture (sample label: Pt1) to start mother cultures (MC1; MC2; MC3 . On day 30 after mother culture isolation (T1 time point), three daughter cells were isolated from each mother culture forming cultures DC11-DC33. Part of mother cultures and CCAP 1055/1 culture were harvested at T1 (Samples: Pt1T1; MC1T1; MC2T1; MC3T1) . After another 30 days (T2 time point), all cultures were harvested (Samples: Pt1T2; mother culture MC1T2 and respective daughter cultures DC11, DC12 and DC13 ; mother culture MC2T2 and respective daughter cultures DC21, DC22 and DC23; mother culture MC3T1 and respective daughter cultures DC31, DC32, DC33).
DOI: 10.6084/m9.figshare.6505013
title: Additional file 2: of PAPP-A2 deficiency does not exacerbate the phenotype of a mouse model of intrauterine growth restriction

description: Datasets analysed in this study. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.6505013.v1
title: Additional file 2: of PAPP-A2 deficiency does not exacerbate the phenotype of a mouse model of intrauterine growth restriction

description: Datasets analysed in this study. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.6504992
title: MOESM2 of Genetic screen identifies a requirement for SMN in mRNA localisation within the Drosophila oocyte

description: Additional file 2: Table S2. Most frequent Gene Ontology (GO) terms for ‘biological process’ of genes covered by SMN 73Ao enhancing chromosome deficiencies. GO terms are ranked in descending order with #1 = most frequent and #14 = least frequent.
DOI: 10.6084/m9.figshare.6504992.v1
title: MOESM2 of Genetic screen identifies a requirement for SMN in mRNA localisation within the Drosophila oocyte

description: Additional file 2: Table S2. Most frequent Gene Ontology (GO) terms for ‘biological process’ of genes covered by SMN 73Ao enhancing chromosome deficiencies. GO terms are ranked in descending order with #1 = most frequent and #14 = least frequent.
DOI: 10.6084/m9.figshare.6504977
title: MOESM1 of Genetic screen identifies a requirement for SMN in mRNA localisation within the Drosophila oocyte

description: Additional file 1: Table S1. Chromosome deficiency lines evaluated in the SMN enhancing screen.
DOI: 10.6084/m9.figshare.6504977.v1
title: MOESM1 of Genetic screen identifies a requirement for SMN in mRNA localisation within the Drosophila oocyte

description: Additional file 1: Table S1. Chromosome deficiency lines evaluated in the SMN enhancing screen.
DOI: 10.6084/m9.figshare.6504788
title: RAW_DATA.rar

description: Here are three datasets of fundus images,which contains the raw retinal fundus image and groundtruth of the corresponding optic disk segmentation.
DOI: 10.6084/m9.figshare.6504755
title: X-ray computed microtomography in the evaluation of the porous system of soils

description: ABSTRACT Analysis of shapes, sizes, continuity, orientation and irregularities of pores can help in the study of soil structural modifications induced by soil management. The study of the inter- and intra-aggregate porous space of urban and rural soils by tomographic images is the objective of this work. A morphometric characterization of the pores was carried out with the analysis of distribution of their size, shape and inclination in these two types of soil. The urban soil showed smaller percentage of inter-aggregate voids and more intra-aggregate voids compared with the rural soil. The cumulative distribution of void volumes showed little pore diversity in the urban soil and great presence of large pores (48%), almost twice the voids with same size in the rural soil. The urban soil, compared to rural soil, also had a higher percentage of flattened pores (29.41%) and a smaller percentage of rounded voids (6.97%), as well as a greater percentage of horizontal voids (44.49%). Hence, the urban soil proved to be more compacted than the rural soil.
DOI: 10.6084/m9.figshare.6504755.v1
title: X-ray computed microtomography in the evaluation of the porous system of soils

description: ABSTRACT Analysis of shapes, sizes, continuity, orientation and irregularities of pores can help in the study of soil structural modifications induced by soil management. The study of the inter- and intra-aggregate porous space of urban and rural soils by tomographic images is the objective of this work. A morphometric characterization of the pores was carried out with the analysis of distribution of their size, shape and inclination in these two types of soil. The urban soil showed smaller percentage of inter-aggregate voids and more intra-aggregate voids compared with the rural soil. The cumulative distribution of void volumes showed little pore diversity in the urban soil and great presence of large pores (48%), almost twice the voids with same size in the rural soil. The urban soil, compared to rural soil, also had a higher percentage of flattened pores (29.41%) and a smaller percentage of rounded voids (6.97%), as well as a greater percentage of horizontal voids (44.49%). Hence, the urban soil proved to be more compacted than the rural soil.
DOI: 10.6084/m9.figshare.6504749
title: The United States, Britain and the Marshall Plan: oil and finance in the early postwar era*

description: Abstract This paper discusses United States foreign economic policy in the early post-World War II period, focusing on Anglo-American relations and the international oil industry. Contrary to popular opinion, these relations were not friendly, as one of the goals of US policymakers was to force the former power to relinquish key areas of strategic and commercial influence, such as the trading networks of the British Commonwealth and, more importantly, the oil regions of the Middle East. In particular, the paper analyzes US oil policy during the Marshall Plan. Though not questioning the Plan’s overall positive impact on European economic growth, the paper argues that, with regard to the oil industry, its primary objective was not to stimulate recovery but to secure a dominant role for US producers in the Middle East.
DOI: 10.6084/m9.figshare.6504749.v1
title: The United States, Britain and the Marshall Plan: oil and finance in the early postwar era*

description: Abstract This paper discusses United States foreign economic policy in the early post-World War II period, focusing on Anglo-American relations and the international oil industry. Contrary to popular opinion, these relations were not friendly, as one of the goals of US policymakers was to force the former power to relinquish key areas of strategic and commercial influence, such as the trading networks of the British Commonwealth and, more importantly, the oil regions of the Middle East. In particular, the paper analyzes US oil policy during the Marshall Plan. Though not questioning the Plan’s overall positive impact on European economic growth, the paper argues that, with regard to the oil industry, its primary objective was not to stimulate recovery but to secure a dominant role for US producers in the Middle East.
DOI: 10.6084/m9.figshare.6504743
title: Relationships between residual feed intake and feedlot performance, profitability, and carcass traits in Brahman cattle

description: ABSTRACT The present study aimed to evaluate the feedlot performance, profitability and carcass traits of Brahman bulls classified according to the residual feed intake (RFI). Twenty-four bulls (19-month old, 370±34kg live weight) were housed in individual pens for 54 days and had the daily feed intake (observed dry matter intake, DMIobs; DMI % live weight, LW) and average daily gain (ADG) measured. Ultrasound carcass evaluations were performed at the initial and final weighings, when measurements were taken of Longissimus dorsi area, ratio, Longissimus and Biceps femoris fat thickness. The animals were ranked and divided into high (&gt;+0.5 standard deviation; SD), medium (between ±0.5 SD from the mean), and low (0.05). Low-RFI animals showed lower weight gain cost and higher daily profit (P&lt;0.05). Carcass traits were similar between groups, regardless of evaluation date (P&gt;0.05). Selection for RFI lead to animals with lower feed intake without affecting weight gain or carcass traits, thereby providing increased profitability for beef cattle farming.
DOI: 10.6084/m9.figshare.6504743.v1
title: Relationships between residual feed intake and feedlot performance, profitability, and carcass traits in Brahman cattle

description: ABSTRACT The present study aimed to evaluate the feedlot performance, profitability and carcass traits of Brahman bulls classified according to the residual feed intake (RFI). Twenty-four bulls (19-month old, 370±34kg live weight) were housed in individual pens for 54 days and had the daily feed intake (observed dry matter intake, DMIobs; DMI % live weight, LW) and average daily gain (ADG) measured. Ultrasound carcass evaluations were performed at the initial and final weighings, when measurements were taken of Longissimus dorsi area, ratio, Longissimus and Biceps femoris fat thickness. The animals were ranked and divided into high (&gt;+0.5 standard deviation; SD), medium (between ±0.5 SD from the mean), and low (0.05). Low-RFI animals showed lower weight gain cost and higher daily profit (P&lt;0.05). Carcass traits were similar between groups, regardless of evaluation date (P&gt;0.05). Selection for RFI lead to animals with lower feed intake without affecting weight gain or carcass traits, thereby providing increased profitability for beef cattle farming.
DOI: 10.6084/m9.figshare.6504737
title: Comparative study of oral and salivary parameters in patients with and without loss of bone mass

description: Abstract Osteoporosis is an insidious and increasingly prevalent disease that can cause fractures and affect patients’ quality of life. The current study comparatively evaluates patients with and without loss of bone mass in terms of salivary calcium, viscosity, and pH. A controlled cross-sectional study was conducted in two groups of 32 postmenopausal women subjected to a bone densitometry scan and later referred for dental management at the Federal University of Minas Gerais, Brazil. The patients were assigned to two groups: Group 1 - patients with low bone mineral density (BMD) and Group 2 - patients without bone mineral changes. The following salivary parameters were evaluated: calcium concentration, flow rate, viscosity, pH, and average total protein. An oral examination was performed for assessment of DMFT variables and tongue coating. Data were analyzed using descriptive and inferential statistics, adopting a p-value &lt; 0.05. The patients’ mean age was 60 years (± 7.35). Salivary flow, pH, and viscosity were similar among the groups. Average total protein was 14.8 mg/mL and 19.0 mg/mL in Groups 1 and 2, respectively. Tongue coating and salivary calcium levels were significantly higher in Group 1 (p &lt; 0.001). Salivary calcium is an important screening tool and may eventually be used for the diagnosis of bone mineral changes.
DOI: 10.6084/m9.figshare.6504737.v1
title: Comparative study of oral and salivary parameters in patients with and without loss of bone mass

description: Abstract Osteoporosis is an insidious and increasingly prevalent disease that can cause fractures and affect patients’ quality of life. The current study comparatively evaluates patients with and without loss of bone mass in terms of salivary calcium, viscosity, and pH. A controlled cross-sectional study was conducted in two groups of 32 postmenopausal women subjected to a bone densitometry scan and later referred for dental management at the Federal University of Minas Gerais, Brazil. The patients were assigned to two groups: Group 1 - patients with low bone mineral density (BMD) and Group 2 - patients without bone mineral changes. The following salivary parameters were evaluated: calcium concentration, flow rate, viscosity, pH, and average total protein. An oral examination was performed for assessment of DMFT variables and tongue coating. Data were analyzed using descriptive and inferential statistics, adopting a p-value &lt; 0.05. The patients’ mean age was 60 years (± 7.35). Salivary flow, pH, and viscosity were similar among the groups. Average total protein was 14.8 mg/mL and 19.0 mg/mL in Groups 1 and 2, respectively. Tongue coating and salivary calcium levels were significantly higher in Group 1 (p &lt; 0.001). Salivary calcium is an important screening tool and may eventually be used for the diagnosis of bone mineral changes.
DOI: 10.6084/m9.figshare.6504734
title: Mammary Hibernoma: A Case Report of a Rare Disease

description: Abstract Mammary hibernomas are extremely rare benign tumors composed of brown fat cells, with only five cases previously reported in the literature. We report the case of a 42- year-old female patient with a painless growing mass in her right breast. A partial mastectomy was performed, and the diagnosis of hibernoma was confirmed by the histological features and the immunohistochemical profile. Although hibernoma is a benign tumor, its main differential diagnoses include aggressive lesions, making the accurate diagnosis essential to provide adequate care to the patient.
DOI: 10.6084/m9.figshare.6504734.v1
title: Mammary Hibernoma: A Case Report of a Rare Disease

description: Abstract Mammary hibernomas are extremely rare benign tumors composed of brown fat cells, with only five cases previously reported in the literature. We report the case of a 42- year-old female patient with a painless growing mass in her right breast. A partial mastectomy was performed, and the diagnosis of hibernoma was confirmed by the histological features and the immunohistochemical profile. Although hibernoma is a benign tumor, its main differential diagnoses include aggressive lesions, making the accurate diagnosis essential to provide adequate care to the patient.
DOI: 10.6084/m9.figshare.6504731
title: Lack of Impairment of Facial Expression Recognition among Individuals with Parkinson Disease

description: ABSTRACT: Among the non-motor symptoms of Parkinson’s disease, impairment in the recognition of emotional facial expressions has been widely discussed, as the disease may affect brain areas related to this skill. The current study has investigated, among elderly people, the recognition of the six emotional face expressions considered universal using the instrument Test of Emotional Perception of Faces, where participants performed an emotional facial recognition task. Forty-one participants with an average age of 64.9 years were enrolled to this study, 27 men and 14 women. No significant impairment in the recognition of emotional face expression was observed among the parkinsonians. This result may indicate the need to develop more adequate tools and techniques able to investigate this issue in the Brazilian population.