cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15330755
title: 3D thermal and rheological model for the western US and East Asia

description: This repository contains netCDF4 datasets of the thermal and rheological model for the western US and East Asia.

ThermalModel_WUS.nc includes the thermal model for the western US and all the temperature proxies used to constrain the thermal model, including surface heat flow (Mordensky et al., 2023), seismogenic thickness dervied from EQ_catalog_WUS.csv, seismogenic thickness uncertainty, crustal thickness (Buehler and Shearer, 2017), and Moho temperature datasets (Schutt et al., 2018). It also contains thermal and rheological modeling results, such as temperature volumes with and without static horizontal diffusion, and a wet quartzite viscosity volume constructed with the diffused temperature volume. Lastly, it also includes the modeled heat flow condition (i.e., crustal, mantle, and surface heat flow), temperature at 20 km depth, crustal-scale geothermal gradient, and maximum geothermal gradient below 250 °C.

ThermalModel_EastAsia.nc includes the thermal model for East Asia and all the temperature proxies used to constrain the thermal structure, including surface heat flow (Wu et al., 2013; Sun et al., 2022), Curie depth (Li et al., 2017), and lithospheric thickness (An and Shi, 2006). It contains the same type of results as the ThermalModel_WUS.nc.

EQ_catalog_WUS.csv contains the merged earthquake catalog in California and Nevada, USA. This catalog is merged from datasets from northern (Waldhauser and Schaff, 2008; Waldhauser, 2009) and southern California (Hauksson et al., 2012), and Nevada (Trugman, 2023, 2024). The hypocenter datum is normalized to surface elevation.

Please refer to our GitHub page (https://github.com/TerryLeeTectonics/ContinentalLithosphereThermalModel) for more details about the thermal model.
DOI: 10.15468/dl.ve36f5
title: Occurrence Download

description: A dataset containing 797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colomesus asellus (Müller & Troschel, 1849)"
 ]
}

 The dataset includes 797 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026859-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9rzct
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tyto manusi Rothschild & Hartert, 1914"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026860-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbyf6r
title: Occurrence Download

description: A dataset containing 681169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "Geometry POLYGON((61.43085 25.5731,62.89696 26.92643,60.78005 30.07917,61.9924 30.67125,61.73865 31.51707,60.61088 32.05276,60.64047 34.34136,61.31714 35.89204,61.06339 36.69045,59.31534 37.50808,56.91883 38.26932,54.6351 37.70544,53.6483 37.33891,48.48875 38.4103,48.08251 39.47651,46.44724 39.0254,44.78379 39.61748,44.16351 39.13818,44.75559 36.5725,46.10891 35.83945,45.57322 34.40154,46.05253 33.66849,46.39086 33.02002,47.7496 32.10081,47.80599 30.86027,48.48265 30.04263,51.44304 26.74391,56.40523 26.68752,57.33564 25.2778,61.53659 24.99586,61.43085 25.5731))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1980-2025"
 ]
}

 The dataset includes 681169 records from 447 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026826-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13242436
title: From Environmental Moisture to Precipitation in Observations and Simulations of Mesoscale Convective Systems

description: Morphological properties, collocated synoptic conditions, and collocated rainfall for mesoscale convective systems in 1) the ISCCP Convective Tracking (CT) dataset with coincident data from the ERA-Interim (ERA-I) reanalysis and the Multi-Source Weighted-Ensemble Precipitation (MSWEP) product and 2) long-channel radiative-convective equilibrium (RCE) simulations in the System for Atmospheric Modeling (SAM).

ISCCP_tracking_colloc.tar.gz - NetCDF files by year from 1983 to 2008 including ISCCP-CT morphological properties of MCSs, a series of collocated synoptic variables from ERAI (including sea surface temperature, winds, specific humidity profiles, cloud condensate profiles, etc.), and collocated precipitation intensity and accumulation from MSWEP.

RCE_colloc_execution1.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by extracting and averaging the variables over grid cells where the precipitation is greater than either its mean (RCE_COL_MEAN_*.nc) or its 99th percentile (RCE_COL_99_*.nc).

RCE_colloc_execution2.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by taking either the mean (RCE_COL_MEAN_*.nc) or the 99th percentile (RCE_COL_99_*.nc) value over all grid cells within the MCS.For the NetCDF files from RCE output, the numeric value in the file name is the corresponding sea surface temperature from 280 to 310 K.
DOI: 10.5281/zenodo.14873203
title: Moisture-Precipitation Couplings for Mesoscale Convective Systems in Tracking Data and Idealized Simulations

description: Morphological properties, collocated synoptic conditions, and collocated rainfall for mesoscale convective systems in 1) the ISCCP Convective Tracking (CT) dataset with coincident data from the ERA-Interim (ERA-I) reanalysis and the Multi-Source Weighted-Ensemble Precipitation (MSWEP) product and 2) long-channel radiative-convective equilibrium (RCE) simulations in the System for Atmospheric Modeling (SAM).

ISCCP_tracking_colloc.tar.gz - NetCDF files by year from 2000 to 2004 inclusive including ISCCP-CT morphological properties of MCSs, a series of collocated synoptic variables from ERA-5 (including specific humidity, temperature, vertical velocity, and cloud condensate profiles), and collocated precipitation intensity and accumulation from MSWEP.

RCE_colloc_execution1.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by extracting and averaging the variables over grid cells where the precipitation is greater than either its mean (RCE_COL_MEAN_*.nc) or its 99th percentile (RCE_COL_99_*.nc).

RCE_colloc_execution2.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by taking either the mean (RCE_COL_MEAN_*.nc) or the 99th percentile (RCE_COL_99_*.nc) value over all grid cells within the MCS.For the NetCDF files from RCE output, the numeric value in the file name is the corresponding sea surface temperature from 280 to 310 K.
DOI: 10.5281/zenodo.13242435
title: Moisture-Precipitation Couplings for Mesoscale Convective Systems in Tracking Data and Idealized Simulations

description: Morphological properties, collocated synoptic conditions, and collocated rainfall for mesoscale convective systems in 1) the ISCCP Convective Tracking (CT) dataset with coincident data from the ERA-Interim (ERA-I) reanalysis and the Multi-Source Weighted-Ensemble Precipitation (MSWEP) product and 2) long-channel radiative-convective equilibrium (RCE) simulations in the System for Atmospheric Modeling (SAM).

ISCCP_tracking_colloc.tar.gz - NetCDF files by year from 2000 to 2004 inclusive including ISCCP-CT morphological properties of MCSs, a series of collocated synoptic variables from ERA-5 (including specific humidity, temperature, vertical velocity, and cloud condensate profiles), and collocated precipitation intensity and accumulation from MSWEP.

RCE_colloc_execution1.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by extracting and averaging the variables over grid cells where the precipitation is greater than either its mean (RCE_COL_MEAN_*.nc) or its 99th percentile (RCE_COL_99_*.nc).

RCE_colloc_execution2.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by taking either the mean (RCE_COL_MEAN_*.nc) or the 99th percentile (RCE_COL_99_*.nc) value over all grid cells within the MCS.For the NetCDF files from RCE output, the numeric value in the file name is the corresponding sea surface temperature from 280 to 310 K.
DOI: 10.5281/zenodo.15390568
title: Moisture-Precipitation Couplings for Mesoscale Convective Systems in Tracking Data and Idealized Simulations

description: Morphological properties, collocated synoptic conditions, and collocated rainfall for mesoscale convective systems in 1) the ISCCP Convective Tracking (CT) dataset with coincident data from the ERA-Interim (ERA-I) reanalysis and the Multi-Source Weighted-Ensemble Precipitation (MSWEP) product and 2) long-channel radiative-convective equilibrium (RCE) simulations in the System for Atmospheric Modeling (SAM).

ISCCP_tracking_colloc.tar.gz - NetCDF files by year from 2000 to 2004 inclusive including ISCCP-CT morphological properties of MCSs, a series of collocated synoptic variables from ERA-5 (including specific humidity, temperature, vertical velocity, and cloud condensate profiles), and collocated precipitation intensity and accumulation from MSWEP.

RCE_colloc_execution1.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by extracting and averaging the variables over grid cells where the precipitation is greater than either its mean (RCE_COL_MEAN_*.nc) or its 99th percentile (RCE_COL_99_*.nc).

RCE_colloc_execution2.tar.gz - NetCDF files including RCE-SAM extent of MCSs (RCE_COL_cluster-sizes_*.nc), as well as collocated synoptic variables. Collocation of synoptic variables is performed for these files by taking either the mean (RCE_COL_MEAN_*.nc) or the 99th percentile (RCE_COL_99_*.nc) value over all grid cells within the MCS.For the NetCDF files from RCE output, the numeric value in the file name is the corresponding sea surface temperature from 280 to 310 K.
DOI: 10.5066/p14nqpvq
title: Data for Assessing the Utility of eDNA Approaches for Determining the Impacts of Metal Mobilization from Thawing Permafrost on Fish Communities in Arctic Streams

description: This data set describes results for laboratory experiments to determine the efficacy of environmental DNA quantitative PCR assays for four fish species when applied to filtered water samples containing metals mobilized from thawing permafrost.
DOI: 10.6084/m9.figshare.28696849
title: The genus <i>Artomyces</i> (Auriscalpiaceae, Basidiomycota) from the Gaoligong Mountains and adjacent areas, southwestern China

description: Three new species of <i>Artomyces</i> from the Gaoligong Mountains and adjacent areas of southwestern China, namely, <i>A. brunneoalbus, A. hirtipes</i>, and <i>A. pteruloides</i>, are described based on morphological characteristics, molecular phylogenetic evidence, and ecological traits. Two other species described recently, <i>A. niveus</i> and <i>A. yunnanensis</i>, have also been identified in the same area. In addition, the occurrence of <i>A. pyxidatus</i> in southwestern China and North Macedonia was confirmed. Our study indicated that the species diversity of <i>Artomyces</i> is relatively high in East Asia. To date, seven species of <i>Artomyces</i> have been reported from the region, including the aforementioned species and <i>A. microsporus</i>. Given the diversity of forest ecosystems, from tropical to temperate areas in China, additional species of the genus could be revealed in the future.
DOI: 10.6084/m9.figshare.28706006
title: The genus <i>Volvariella</i> from southwestern China

description: In this study, morphological characteristics, ecological features, and phylogenetic analyses based on nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS), partial nuc rDNA 28S (28S), and the translation elongation factor 1-α (<i>TEF1</i>) were employed to investigate the species diversity of the genus <i>Volvariella</i> in southwestern China. Eight species are recognized, among which are five known species, namely, <i>V. bombycina, V. hypopithys, V. morozovae, V. pulla</i>, and <i>V. volvacea</i>, and three new species described here, namely, <i>V. parvirimosa, V. pilosa</i>, and <i>V. rimosa. Volvariella pulla</i> represents a species new to China. For species delimitation, the size of the basidiomes, the morphology of the pileus, the size of basidiospores, and the morphology of hymenial cystidia are informative. Taxonomic descriptions of the new species are presented, and a key to the eight species from southwestern China is provided.
DOI: 10.6084/m9.figshare.28706006.v1
title: The genus <i>Volvariella</i> from southwestern China

description: In this study, morphological characteristics, ecological features, and phylogenetic analyses based on nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS), partial nuc rDNA 28S (28S), and the translation elongation factor 1-α (<i>TEF1</i>) were employed to investigate the species diversity of the genus <i>Volvariella</i> in southwestern China. Eight species are recognized, among which are five known species, namely, <i>V. bombycina, V. hypopithys, V. morozovae, V. pulla</i>, and <i>V. volvacea</i>, and three new species described here, namely, <i>V. parvirimosa, V. pilosa</i>, and <i>V. rimosa. Volvariella pulla</i> represents a species new to China. For species delimitation, the size of the basidiomes, the morphology of the pileus, the size of basidiospores, and the morphology of hymenial cystidia are informative. Taxonomic descriptions of the new species are presented, and a key to the eight species from southwestern China is provided.
DOI: 10.6084/m9.figshare.28578197
title: Multilocus phylogeny contributes to fungal taxonomy with three novel species of <i>Conocybe</i> (Bolbitiaceae) from southern Punjab, Pakistan

description: Advancements in fungal taxonomy have been significantly enhanced by multilocus phylogenetic analyses, which improve the precision of species identification. This study also employs such methods to investigate the genus <i>Conocybe</i>, resulting in the description of three novel species, viz. <i>C. hasiluprensis</i> and <i>C. sultanii</i> belonging to the section <i>Pilosellae</i> and <i>C. ferruginae</i> of section <i>Conocybe</i>, from southern Punjab, Pakistan. Field collections yielded specimens that were examined morphologically and genetically, using a multilocus phylogenetic analysis utilizing sequences from the ITS, 28S, and <i>TEF1-α</i> regions. A combined phylogenetic tree was constructed through maximum likelihood and Bayesian inference methods, revealing three novel taxa occupying their respective distinct branches. Further, morphological analysis complemented the genetic data, with each species displaying unique characteristics. This study not only adds to the fungal biodiversity of Pakistan but also provides a robust framework for future taxonomic and ecological research in the region. In addition, we provide a key to the known species of <i>Conocybe</i> in Pakistan.
DOI: 10.6084/m9.figshare.28578197.v1
title: Multilocus phylogeny contributes to fungal taxonomy with three novel species of <i>Conocybe</i> (Bolbitiaceae) from southern Punjab, Pakistan

description: Advancements in fungal taxonomy have been significantly enhanced by multilocus phylogenetic analyses, which improve the precision of species identification. This study also employs such methods to investigate the genus <i>Conocybe</i>, resulting in the description of three novel species, viz. <i>C. hasiluprensis</i> and <i>C. sultanii</i> belonging to the section <i>Pilosellae</i> and <i>C. ferruginae</i> of section <i>Conocybe</i>, from southern Punjab, Pakistan. Field collections yielded specimens that were examined morphologically and genetically, using a multilocus phylogenetic analysis utilizing sequences from the ITS, 28S, and <i>TEF1-α</i> regions. A combined phylogenetic tree was constructed through maximum likelihood and Bayesian inference methods, revealing three novel taxa occupying their respective distinct branches. Further, morphological analysis complemented the genetic data, with each species displaying unique characteristics. This study not only adds to the fungal biodiversity of Pakistan but also provides a robust framework for future taxonomic and ecological research in the region. In addition, we provide a key to the known species of <i>Conocybe</i> in Pakistan.
DOI: 10.6084/m9.figshare.28569231
title: The <i>Pluteus leoninus</i> clade in the Holarctic region: existing names evaluated and seven new species described

description: <i>Pluteus leoninus</i> is a commonly reported species, characterized by a yellow pileus, yellow colors on the stipe, pleurocystidia provided with digitiform excrescences, and a pileipellis composed of long, fusiform elements. Several species related to <i>P. leoninus</i> have been described from the temperate and boreal areas of the Northern Hemisphere, and previous phylogenetic studies have shown that more than one species can be recognized around <i>P. leoninus</i>, but it was unclear how many, or which names, would be correct for them. We studied 141 holarctic collections in the /leoninus clade and available type collections of species in this group. Taking into account the morphological, molecular (ITS, <i>tef1</i>), ecological, and geographic variation in our data set, we recognize 12 holarctic species, six in Eurasia (<i>P. favrei, P. leoninus, P. roseipes, P. ochraceoleoninus</i>, sp. nov. <i>P. ussuriensis</i>, sp. nov. <i>P. variabilicolor</i>) and six in North America (<i>P. aureus</i>, sp. nov. <i>P. croceus</i>, sp. nov. <i>P. flavofuligineus, P. hesperius</i>, sp. nov. <i>P. insularis</i>, sp. nov. <i>P. pumae</i>, sp. nov.). Tropical species included by Singer in stirps <i>Leoninus</i> are briefly discussed: <i>P. chrysaegis</i>, originally described from Srik Lanka, is confirmed to occur in North America (Florida, Puerto Rico); we provide the first modern description and molecular data for <i>P. conizatus</i>, originally described from Sri Lanka, which is confirmed to be part of <i>Pluteus</i> sect. <i>Hispidoderma</i> but does not belong in the /leoninus clade.
DOI: 10.6084/m9.figshare.28569231.v1
title: The <i>Pluteus leoninus</i> clade in the Holarctic region: existing names evaluated and seven new species described

description: <i>Pluteus leoninus</i> is a commonly reported species, characterized by a yellow pileus, yellow colors on the stipe, pleurocystidia provided with digitiform excrescences, and a pileipellis composed of long, fusiform elements. Several species related to <i>P. leoninus</i> have been described from the temperate and boreal areas of the Northern Hemisphere, and previous phylogenetic studies have shown that more than one species can be recognized around <i>P. leoninus</i>, but it was unclear how many, or which names, would be correct for them. We studied 141 holarctic collections in the /leoninus clade and available type collections of species in this group. Taking into account the morphological, molecular (ITS, <i>tef1</i>), ecological, and geographic variation in our data set, we recognize 12 holarctic species, six in Eurasia (<i>P. favrei, P. leoninus, P. roseipes, P. ochraceoleoninus</i>, sp. nov. <i>P. ussuriensis</i>, sp. nov. <i>P. variabilicolor</i>) and six in North America (<i>P. aureus</i>, sp. nov. <i>P. croceus</i>, sp. nov. <i>P. flavofuligineus, P. hesperius</i>, sp. nov. <i>P. insularis</i>, sp. nov. <i>P. pumae</i>, sp. nov.). Tropical species included by Singer in stirps <i>Leoninus</i> are briefly discussed: <i>P. chrysaegis</i>, originally described from Srik Lanka, is confirmed to occur in North America (Florida, Puerto Rico); we provide the first modern description and molecular data for <i>P. conizatus</i>, originally described from Sri Lanka, which is confirmed to be part of <i>Pluteus</i> sect. <i>Hispidoderma</i> but does not belong in the /leoninus clade.
DOI: 10.6084/m9.figshare.28676684
title: Identification and fungicide sensitivity of <i>Brunneomyces pennisetum</i>, a new species causing wilt disease of <i>Pennisetum purpureum × P. americanum</i> in southern China

description: <i>Pennisetum purpureum</i> × <i>P. americanum</i> is an important forage in southwest China. In recent years, a considerable number of wilting plants have occurred in forage-growing regions located in Yunnan Province. The typical symptoms were that the surface of the wilted stems turned brown with a covering of white powder. Six isolates were identified as a new <i>Brunneomyces</i> species based on morphological characteristics and combined phylogenetic analysis of partial 28S nuc rDNA region (28S), internal transcribed spacer (ITS), translation elongation factor 1-alpha (<i>TEF1-α</i>), and the RNA polymerase II second largest subunit (<i>RPB2</i>) sequence data. The Koch’s postulates test confirmed <i>Brunneomyces pennisetum</i>, sp. nov. as a pathogen causing wilt disease in <i>Pennisetum purpureum</i> × <i>P. americanum</i>. The colony diameter of <i>B. pennisetum</i>, sp. nov. exhibited different sensitivity to the six fungicides. Carbendazol (50%) was demonstrated to be the most effective in slowing the growth rate of the pathogen. The pathogen exhibited a higher growth rate at pH 7.0 but could not grow when the pH was greater than 9. The pathogen growth peaked at 25 C, but it could not grow at 5, 10, and 35 C.
DOI: 10.6084/m9.figshare.28676684.v1
title: Identification and fungicide sensitivity of <i>Brunneomyces pennisetum</i>, a new species causing wilt disease of <i>Pennisetum purpureum × P. americanum</i> in southern China

description: <i>Pennisetum purpureum</i> × <i>P. americanum</i> is an important forage in southwest China. In recent years, a considerable number of wilting plants have occurred in forage-growing regions located in Yunnan Province. The typical symptoms were that the surface of the wilted stems turned brown with a covering of white powder. Six isolates were identified as a new <i>Brunneomyces</i> species based on morphological characteristics and combined phylogenetic analysis of partial 28S nuc rDNA region (28S), internal transcribed spacer (ITS), translation elongation factor 1-alpha (<i>TEF1-α</i>), and the RNA polymerase II second largest subunit (<i>RPB2</i>) sequence data. The Koch’s postulates test confirmed <i>Brunneomyces pennisetum</i>, sp. nov. as a pathogen causing wilt disease in <i>Pennisetum purpureum</i> × <i>P. americanum</i>. The colony diameter of <i>B. pennisetum</i>, sp. nov. exhibited different sensitivity to the six fungicides. Carbendazol (50%) was demonstrated to be the most effective in slowing the growth rate of the pathogen. The pathogen exhibited a higher growth rate at pH 7.0 but could not grow when the pH was greater than 9. The pathogen growth peaked at 25 C, but it could not grow at 5, 10, and 35 C.