cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.2zm2ds
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((54.98405277901992 -21.339716907322046,55.462098104798955 -21.339716907322046,55.462098104798955 -20.861671581543003,54.98405277901992 -20.861671581543003,54.98405277901992 -21.339716907322046))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Scarus ghobban"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053966-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/grtw-hr67
title: Data from Mintz et al. 2026 (UNCOVER + MegaScience PRISM spectra)

description: PRISM spectra used in Mintz et al. 2026 taken as part of the UNCOVER and MegaScience programs.
DOI: 10.6084/m9.figshare.30356281.v3
title: MRI Data and associated sample information

description: Dataset generated with a 7T Bruker system at 40 um resolution. LSQ6 and voted files provided as .mnc files with associated volumes and sample information
DOI: 10.5281/zenodo.17943543
title: A Sign-Locked, Falsifiable Bridge Between Jet Quenching and Near-Threshold J/ψ Photoproduction

description: A Sign-Locked, Falsifiable Bridge Between Jet Quenching and Near-Threshold J/psi Photoproduction (v2)

This record contains the manuscript and reproducibility assets for a falsifiable “sign-locked” link between (i) heavy-ion jet quenching (as a confinement-tension sign prior) and (ii) the near-threshold J/psi photoproduction small-|t| slope parameter B_g, which encodes the proton’s gluonic mass radius.

The paper introduces a weak scalar “strain” field coupled to the gluonic energy density and derives a mechanical sign-locking rule: if the effective confining string tension shift is positive (stiffer effective strings), then the induced shift in B_g must be negative (gluonic mass radius decreases). A statistically significant opposite sign would falsify the interpretation. (See manuscript for the decision rule and extraction protocol.)

Contents:





Manuscript PDF (v2)




Cleaned GlueX differential cross-section tables




Analysis scripts and metadata required for reproducibility



Licenses:





Data: CC-BY-4.0




Code: MIT



Version note:





v2 updates the manuscript PDF only; all data/scripts/metadata are unchanged from v1.
DOI: 10.5281/zenodo.17430789
title: Bibliometric insights from biofertilizer research in dryland Agriculture: Supplementary Materials

description: This repository contains all datasets, screening records, supplementary tables and figures, and VOSviewer Pajek files used on Gephi for modularity analysis for the review article “Systematic Review of Biofertilizer Research in Dryland Agriculture.”  The supplemnetary files ensure full transparency and reproducibility of the bibliometric workflow conducted in Scopus and Dimensions, including search queries, screening steps, cleaned datasets, and network analyses. All analyses were performed between December 2024 and August 2025.

Software and Versions: VOSviewer v1.6.x, Gephi v0.10.x All parameters and thresholds are described in Pajek network files

Reproduction Workflow: Run the Scopus and Dimensions queries using the advanced search interface (the search strings are provided in the main text). Export full metadata (CSV) for “Article” and “Review” types, language = English.

Screening and cleaning: View inclusion/exclusion criteria in the main text. The final cleaned dataset is attached.

Network maps generation:

Upload cleaned data into VOSviewer application and generate the network maps.

Run keywords co-occurrence, co-authorship, and citation network at three thresholds n ≥ 1, 3, and 5 for all network levels. Export pajek files from VOSviewer to Gephi to run the modularity analysis. Use default settings on Gephi: resolution = 1.0; normalization = association strength; attraction = 2, repulsion = –1 (default).
DOI: 10.5281/zenodo.17430790
title: Bibliometric insights from biofertilizer research in dryland Agriculture: Supplementary Materials

description: This repository contains all datasets, screening records, supplementary tables and figures, and VOSviewer Pajek files used on Gephi for modularity analysis for the review article “Systematic Review of Biofertilizer Research in Dryland Agriculture.”  The supplemnetary files ensure full transparency and reproducibility of the bibliometric workflow conducted in Scopus and Dimensions, including search queries, screening steps, cleaned datasets, and network analyses. All analyses were performed between December 2024 and August 2025.

Software and Versions: VOSviewer v1.6.x, Gephi v0.10.x All parameters and thresholds are described in Pajek network files

Reproduction Workflow: Run the Scopus and Dimensions queries using the advanced search interface (the search strings are provided in the main text). Export full metadata (CSV) for “Article” and “Review” types, language = English.

Screening and cleaning: View inclusion/exclusion criteria in the main text. The final cleaned dataset is attached.

Network maps generation:

Upload cleaned data into VOSviewer application and generate the network maps.

Run keywords co-occurrence, co-authorship, and citation network at three thresholds n ≥ 1, 3, and 5 for all network levels. Export pajek files from VOSviewer to Gephi to run the modularity analysis. Use default settings on Gephi: resolution = 1.0; normalization = association strength; attraction = 2, repulsion = –1 (default).
DOI: 10.60905/kee6is
title: Resistencia

description: &lt;p&gt;��La calle es de quien la habita! Ayer fue terraza y pista de baile la calle Barbacoas del Centro de Medell��n. Las mujeres trans que ejercen el trabajo sexual se tomaron su calle, una que habitan y viven ya de vieja data. Hubo m��sica, conversaci��n, arte y cultura alrededor de una gran Olla del Putas.&lt;/p&gt;
description: Calle de Barbacoas <br>

Inicio y ascenso de la Paro Nacional #28A. 28 de abril al 28 de julio de 2021
DOI: 10.15468/dl.cph8sm
title: Occurrence Download

description: A dataset containing 1585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Xyleus discoideus"
 ]
}

 The dataset includes 1585 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053967-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30356281.v4
title: MRI Data and associated sample information

description: Dataset generated with a 7T Bruker system at 40 um resolution. LSQ6 and voted files provided as .mnc files with associated volumes and sample information
DOI: 10.6084/m9.figshare.30887749
title: Mixed Geographically Weighted XGBoost (M-GWXGB) Model: A New Spatially Explicit Machine Learning Model

description: Analyzing spatially varying relationships constitutes a fundamental pursuit in geography, crucial for comprehending intricate spatial patterns. These relationships can arise from spatial heterogeneity or from nonlinearity. To distinguish these diverse relationships, researchers have developed spatially varying coefficient (SVC) models and machine learning (ML) techniques. When confronted with nonlinear relationships that also exhibit spatial nonstationarity, though, existing models might produce misleading conditional relationships. To address this research gap, this study introduces a mixed geographically weighted extreme gradient boosting (M-GWXGB) model, which integrates a semiparametric generalized additive model with a multiscale ML approach to estimate variable-specific spatial processes while addressing both spatial heterogeneity and nonlinearity. We calculate the marginal contributions to extract spatially varying and nonlinear relationships. We evaluate the efficiency of our proposed approach on three simulated data sets and a real-world data set, showing that M-GWXGB can avoid the misinterpretation of spatial variation as nonlinearity and vice versa. Additionally, our new model outperforms mainstream spatially explicit ML models (e.g., XGB, graph convolutional network [GCN], GWXGB) and SVCs (e.g., multiscale geographically weighted regression) in terms of predictability, interpretability, and the capability to estimate variable-specific spatial processes, particularly when spatial heterogeneity and nonlinearity coexist. Finally, we propose a roadmap to guide the application of the M-GWXGB model. Our empirical analysis yields valuable insights into leveraging M-GWXGB to elucidate complex geographical phenomena, highlighting its potential to understand spatially varying processes in spatial data.
DOI: 10.6084/m9.figshare.30887749.v1
title: Mixed Geographically Weighted XGBoost (M-GWXGB) Model: A New Spatially Explicit Machine Learning Model

description: Analyzing spatially varying relationships constitutes a fundamental pursuit in geography, crucial for comprehending intricate spatial patterns. These relationships can arise from spatial heterogeneity or from nonlinearity. To distinguish these diverse relationships, researchers have developed spatially varying coefficient (SVC) models and machine learning (ML) techniques. When confronted with nonlinear relationships that also exhibit spatial nonstationarity, though, existing models might produce misleading conditional relationships. To address this research gap, this study introduces a mixed geographically weighted extreme gradient boosting (M-GWXGB) model, which integrates a semiparametric generalized additive model with a multiscale ML approach to estimate variable-specific spatial processes while addressing both spatial heterogeneity and nonlinearity. We calculate the marginal contributions to extract spatially varying and nonlinear relationships. We evaluate the efficiency of our proposed approach on three simulated data sets and a real-world data set, showing that M-GWXGB can avoid the misinterpretation of spatial variation as nonlinearity and vice versa. Additionally, our new model outperforms mainstream spatially explicit ML models (e.g., XGB, graph convolutional network [GCN], GWXGB) and SVCs (e.g., multiscale geographically weighted regression) in terms of predictability, interpretability, and the capability to estimate variable-specific spatial processes, particularly when spatial heterogeneity and nonlinearity coexist. Finally, we propose a roadmap to guide the application of the M-GWXGB model. Our empirical analysis yields valuable insights into leveraging M-GWXGB to elucidate complex geographical phenomena, highlighting its potential to understand spatially varying processes in spatial data.
DOI: 10.25574/26933
title: Chandra X-ray Observatory ObsId 26933

description: Constraining the X-ray Features of the Double Radio Relic Cluster ZWCL1856+6616 with High-Resolution Chandra Observation
DOI: 10.15468/dl.zmg58a
title: Occurrence Download

description: A dataset containing 4695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is USA.5.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanerpes formicivorus",
 "Year 2020-2025"
 ]
}

 The dataset includes 4695 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053968-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17943626
title: GWAS for β acid BLUPs in the F1 ApolloXPubM_740 population phase 1

description: GWAS for β acid BLUPs in the F1 ApolloXPubM_740 population. Manhattan plots show association results for β acid content using the Phase 1
DOI: 10.5281/zenodo.17943625
title: GWAS for β acid BLUPs in the F1 ApolloXPubM_740 population phase 1

description: GWAS for β acid BLUPs in the F1 ApolloXPubM_740 population. Manhattan plots show association results for β acid content using the Phase 1
DOI: 10.6084/m9.figshare.30887729
title: Custom ABRicate database adapted from Long, 2021

description: Custom ABRicate database adapted from Long, 2021 to identify APEC-associated virulence genes as well as genes described in the Liu <i>et al., </i>(2018) criteria, defining ColV plasmids.
DOI: 10.6084/m9.figshare.30887729.v1
title: Custom ABRicate database adapted from Long, 2021

description: Custom ABRicate database adapted from Long, 2021 to identify APEC-associated virulence genes as well as genes described in the Liu <i>et al., </i>(2018) criteria, defining ColV plasmids.
DOI: 10.6084/m9.figshare.30887744
title: Patagioenas-habitat use

description: Urbanization transforms natural habitats into heterogeneous and highly modified landscapes that create strong ecological filters for wildlife. Understanding how native species colonize and persist in cities is essential for identifying the mechanisms that facilitate urban adaptation. Here, we investigated habitat use and nesting-site selection of two native South American pigeons, the Spot-winged Pigeon (<i>Patagioenas maculosa</i>) and the Picazuro Pigeon (<i>P. picazuro</i>), across urban environments of the southwestern Pampas region, Argentina. Although both species were frequent in cities, they exhibited distinct responses to urban habitat structure. At the transect scale, both pigeons selected vegetated areas characterized by greater tree cover and reduced bare soil, yet Spot-winged Pigeon tolerated slightly more built-up settings, whereas Picazuro Pigeon was more strongly associated with arboreal structure. At finer spatial scales, both species preferentially used open microhabitats with lower tree and shrub cover than expected from availability, suggesting a convergence toward structurally open sites for foraging or vigilance. Abundance models revealed contrasting environmental drivers, with Spot-winged Pigeon slightly positively associated with herbaceous cover and Picazuro Pigeon dependent on tree cover. Nest-site characteristics further highlighted species-level differences: Picazuro Pigeon nested in trees with denser canopies, whereas Spot-winged Pigeon showed greater tolerance for open nesting substrates. Together, these findings indicate that closely related species can follow different ecological pathways to urban colonization, shaped by their natural-history affinities. Our study underscores the role of cities as heterogeneous mosaics that enable the coexistence of species with distinct habitat requirements and provides new insights into the mechanisms underlying the expansion of native pigeons into human-modified landscapes.
DOI: 10.6084/m9.figshare.30887744.v1
title: Patagioenas-habitat use

description: Urbanization transforms natural habitats into heterogeneous and highly modified landscapes that create strong ecological filters for wildlife. Understanding how native species colonize and persist in cities is essential for identifying the mechanisms that facilitate urban adaptation. Here, we investigated habitat use and nesting-site selection of two native South American pigeons, the Spot-winged Pigeon (<i>Patagioenas maculosa</i>) and the Picazuro Pigeon (<i>P. picazuro</i>), across urban environments of the southwestern Pampas region, Argentina. Although both species were frequent in cities, they exhibited distinct responses to urban habitat structure. At the transect scale, both pigeons selected vegetated areas characterized by greater tree cover and reduced bare soil, yet Spot-winged Pigeon tolerated slightly more built-up settings, whereas Picazuro Pigeon was more strongly associated with arboreal structure. At finer spatial scales, both species preferentially used open microhabitats with lower tree and shrub cover than expected from availability, suggesting a convergence toward structurally open sites for foraging or vigilance. Abundance models revealed contrasting environmental drivers, with Spot-winged Pigeon slightly positively associated with herbaceous cover and Picazuro Pigeon dependent on tree cover. Nest-site characteristics further highlighted species-level differences: Picazuro Pigeon nested in trees with denser canopies, whereas Spot-winged Pigeon showed greater tolerance for open nesting substrates. Together, these findings indicate that closely related species can follow different ecological pathways to urban colonization, shaped by their natural-history affinities. Our study underscores the role of cities as heterogeneous mosaics that enable the coexistence of species with distinct habitat requirements and provides new insights into the mechanisms underlying the expansion of native pigeons into human-modified landscapes.
DOI: 10.5281/zenodo.17943211
title: Raw luminescence, absorption, and mass spectrometry data for cyanine dye–based determination of iron(III) and oxalate

description: This dataset contains raw and processed luminescence and absorption spectra, mass spectrometric data, calibration curves, and Origin project files used for the determination of iron(III) and oxalate using the indocyanine dye Ind2. The data support the findings reported in the associated manuscript submitted to Analyst.
DOI: 10.15468/dl.6pkg2f
title: Occurrence Download

description: A dataset containing 356122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Castanea sativa",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 356122 records from 1748 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053951-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7gm7g7
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Pseudoplatystoma metaense Buitrago-Suárez & Burr, 2007"
 ]
}

 The dataset includes 25 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0428820-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t7xfrf
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea heteropappa Pruski & Urbatsch"
 ]
}

 The dataset includes 78 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115060-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzxdrm
title: Occurrence Download

description: A dataset listing the 125 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 {
 "or" : [
 "Country is Norway",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Ireland",
 "Country is Sweden"
 ]
 },
 "TaxonKey is Monogenea"
 ]
}

 The dataset's 125 records were derived from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231204-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c55ag4
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabrotica undecimpunctata undecimpunctata"
 ]
}

 The dataset includes 142 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115061-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zp6ana
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Klebsormidiophyceae",
 "HasCoordinate is true",
 "Country is one of (Norway)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 203 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231211-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evr56h
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea kunhardtii Maguire"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115071-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xn29z
title: Occurrence Download

description: A dataset containing 1967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna uniflora (Mill.) H.S.Irwin & Barneby",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1967 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014099-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7kc7t
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea linearifolia Maguire & Wurdack"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115075-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8un4v
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulakanthura marlee Poore, 1981"
 ]
}

 The dataset includes 161 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134096-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ead4qu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bachia beebei Murphy, Salvi, Santos, Braswell, Charles, Borzée & Jowers, 2019"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284552-210914110416597/datasets/export for details.
DOI: 10.15468/dl.ndxt4m
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calea longipedicellata B.L.Rob. & Greenm."
 ]
}

 The dataset includes 186 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0115076-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.