cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.a6qfme
title: Occurrence Download

description: A dataset containing 13433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Linum uninerve (Rchb.) Jáv., Linum usitatissimum L., Linum virgultorum Planch., Linum viscosum L., Lipandra polysperma (L.) S.Fuentes, Uotila & Borsch, Liparis loeselii subsp. loeselii, Liquidambar orientalis Mill., Liriodendron tulipifera L., Lithodora fruticosa (L.) Griseb., Lithodora hispidula (Sm.) Griseb.)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "DatasetKey is one of (Pl@ntNet automatically identified occurrences, Pl@ntNet observations, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, naturgucker, Artportalen (Swedish Species Observation System), Norwegian Species Observation Service, Programme d'observation naturaliste participative avec l'application mobile INPN Espèces - Application INPN Espèces: Observations naturalistes, participatives et opportunistes, fondées sur des photographies, Species recordings from the Danish National portal Arter.dk, Lajitietokeskus/FinBIF - Notebook, general observations, Vascular plant records verified via iRecord, iRecord Surveys)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 13433 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069956-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ozvssn
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1970-2019",
 "HasCoordinate is true",
 "TaxonKey is Bactris major Jacq.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 228 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009071-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xe5hyb
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 },
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America",
 "Country is Colombia",
 "Country is Ecuador"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pusula solandri (J.E.Gray, 1832)"
 ]
}

 The dataset includes 197 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134659-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cv58m
title: Occurrence Download

description: A dataset containing 10769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sylvilagus audubonii (Baird, 1858)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10769 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009079-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pezam6
title: Occurrence Download

description: A dataset containing 20783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lindernia dubia (L.) Pennell, Lindernia dubia (L.) Pennell, Lindernia procumbens (Krock.) Borbás, Linnaea borealis L., Linum alpinum Jacq., Linum alpinum subsp. alpinum, Linum alpinum subsp. laeve (Scop.) Nyman, Linum appressum Caball., Linum appressum subsp. appressum, Linum appressum subsp. commutatum Mart.Labarga & Muñoz Garm.)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "DatasetKey is one of (Pl@ntNet automatically identified occurrences, Pl@ntNet observations, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, naturgucker, Artportalen (Swedish Species Observation System), Norwegian Species Observation Service, Programme d'observation naturaliste participative avec l'application mobile INPN Espèces - Application INPN Espèces: Observations naturalistes, participatives et opportunistes, fondées sur des photographies, Species recordings from the Danish National portal Arter.dk, Lajitietokeskus/FinBIF - Notebook, general observations, Vascular plant records verified via iRecord, iRecord Surveys)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 20783 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069947-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxat3s
title: Occurrence Download

description: A dataset containing 1027799 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données ONF faune-flore-fonge"
 ]
}

 The dataset includes 1027799 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133262-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nxqiws
title: Occurrence Download

description: A dataset containing 44983 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sylvilagus Gray, 1867",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44983 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009076-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bc7tgb
title: Occurrence Download

description: A dataset containing 1015 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Spain",
 "DatasetKey is one of (FloraCAT: Banco de datos de los cormófitos de Cataluña, iNaturalist Research-grade Observations, DIBA-Parc Natural del Montseny, CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España, CeDoc de Biodiversitat Vegetal: BCN-Cormophyta, Pl@ntNet observations, Observation.org, Nature data from around the World, CSIC-Real Jardín Botánico-Colección de Plantas Vasculares (MA), Sistema de Información de la vegetación Ibérica y Macaronésica)",
 "Geometry POLYGON((0.5204 43.13344,0.22526 41.46359,0.40235 40.6289,0.80079 40.41576,3.29474 41.13098,3.47182 42.42944,0.5204 43.13344))",
 "HasGeospatialIssue is false",
 "TaxonKey is Senecio inaequidens DC."
 ]
}

 The dataset includes 1015 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070517-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szcapy
title: Occurrence Download

description: A dataset containing 9435714 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Anillamiento SEO_Bird ringing"
 ]
}

 The dataset includes 9435714 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111415-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xrlxf
title: Occurrence Download

description: A dataset containing 842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 {
 "or" : [
 "Month is January",
 "Month is February",
 "Month is March",
 "Month is April",
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is September",
 "Month is November",
 "Month is December"
 ]
 },
 "Year 2009-2013",
 "TaxonKey is Liliopsida"
 ]
}

 The dataset includes 842 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002940-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq2522
title: Occurrence Download

description: A dataset containing 509 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact"
 ]
}

 The dataset includes 509 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070526-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78aaq8
title: Occurrence Download

description: A dataset containing 650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Celtis brasiliensis (Gardner) Planch."
 ]
}

 The dataset includes 650 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092382-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpjvty
title: Occurrence Download

description: A dataset containing 631 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Linum narbonense subsp. barrasii (Pau) Mart.Labarga & Muñoz Garm., Linum nervosum Waldst. & Kit., Linum nervosum subsp. jailicola (Juz.) T.V.Egorova, Linum nervosum subsp. nervosum, Linum nodiflorum L., Linum ockendonii Greuter & Burdet, Linum pallasianum Schult., Linum pallasianum subsp. pallasianum, Linum perenne L., Linum perenne subsp. perenne)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "DatasetKey is one of (Pl@ntNet automatically identified occurrences, Pl@ntNet observations, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, naturgucker, Artportalen (Swedish Species Observation System), Norwegian Species Observation Service, Programme d'observation naturaliste participative avec l'application mobile INPN Espèces - Application INPN Espèces: Observations naturalistes, participatives et opportunistes, fondées sur des photographies, Species recordings from the Danish National portal Arter.dk, Lajitietokeskus/FinBIF - Notebook, general observations, Vascular plant records verified via iRecord, iRecord Surveys)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 631 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069953-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwntka
title: Occurrence Download

description: A dataset containing 10273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lynx rufus (Schreber, 1777)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10273 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009081-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gk8sbs
title: Occurrence Download

description: A dataset containing 17529946 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Portugal"
 ]
}

 The dataset includes 17529946 records from 1599 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0390589-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive6762.20251217.10
title: Legionella nautarum Dennis et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6763.20250331.9.3
title: Legionella londiniensis Dennis et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074815.10fu
title: SH0074815.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive6763.20251217.10
title: Legionella londiniensis Dennis et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6764.20250331.9.3
title: Legionella worsleiensis Dennis et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6764.20251217.10
title: Legionella worsleiensis Dennis et al. 1993

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6765.20250331.9.3
title: Legionella lansingensis Thacker et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074816.10fu
title: SH0074816.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive6765.20251217.10
title: Legionella lansingensis Thacker et al. 1994

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0074817.10fu
title: SH0074817.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.17896230
title: DNA Damage Induction After Exposure to Ferrite Nanoparticles for biomedical applications (MxFe3-xO4, M = Fe, Zn, Mn) in an Advanced 3D Human Hepatic in vitro Model

description: Nanosized spinel-type ferrites have gained recognition as a unique class of engineered nanomaterials with promising applications, but their safety profiles remain insufficiently explored. Although iron (Fe), zinc (Zn), and manganese (Mn) are biologically relevant elements, the use of Zn- and Mn-containing ferrite nanoparticles in biomedical contexts demands careful (geno)toxicity evaluation. In this study, three ferrite nanoparticles – γFe2O3 (FeNPs), Zn0.7Fe2.3O4 (ZnNPs), and Mn0.4Fe2.6O4 (MnNPs) – synthesised through a microwave-assisted polyol route, functionalized with citric acid to improve colloidal stability, were evaluated for their potential (geno)toxic effects in an advanced in vitro 3D cell model, HepG2 spheroids.

DNA damage induction was studied using the alkaline comet assay. After 24 and 96 hours of exposure, spheroids were dissociated into a single-cell suspension by collagenase treatment. Each spheroid was incubated in 0.25% trypsin–EDTA for 3 minutes and then gently dissociated into a single-cell suspension using cut pipette tips. After this the comet assay was conducted under conditions described in the Supplement material (Table 1). The cell suspension was combined with 1% low-melting-point (LMP) agarose and layered onto fully frosted slides pre-coated with 1% normal-melting-point (NMP) agarose. Slides were lysed, the nucleoids unwound and electrophoresis preformed, followed by neutralisation of the gells.

Table 1: Comet assay conditions.






Phase



Buffer composition



Conditions





Cell lysis



0.1 M EDTA, 2.5 M NaOH, 0.01 M Tris, 1% Triton X-100



 pH 10, 4 °C, 60 min





Unwinding



300 mM NaOH, 1 mM EDTA



pH 13, 4 °C, 20 min





Electrophoresis



300 mM NaOH, 1 mM EDTA



25 V and 300 mA (0.5–1 V/cm),

4 °C, 20 min





Neutralization



0.4 M Tris 



pH 7.5, 4 °C, 15 min





For comet scoring, gells were stained using the GelRed nucleic acid stain (Biotium, USA) according to the manufacturer's instructions. Analysis and scoring were performed using a fluorescent microscope and Comet Assay IV software (Instem, Philadelphia, USA). A positive (30 and 5 µM benzo[a]pyrene; BaP for 24 and 96 hours, respectively) control was included. Each experiment was conducted independently three times, analysing 50 nuclei per experimental point from a poled sample of 3-4 spheroids. The datasets represent the exported analysis performed in Comet Assay IV.
DOI: 10.5281/zenodo.17896231
title: DNA Damage Induction After Exposure to Ferrite Nanoparticles for biomedical applications (MxFe3-xO4, M = Fe, Zn, Mn) in an Advanced 3D Human Hepatic in vitro Model

description: Nanosized spinel-type ferrites have gained recognition as a unique class of engineered nanomaterials with promising applications, but their safety profiles remain insufficiently explored. Although iron (Fe), zinc (Zn), and manganese (Mn) are biologically relevant elements, the use of Zn- and Mn-containing ferrite nanoparticles in biomedical contexts demands careful (geno)toxicity evaluation. In this study, three ferrite nanoparticles – γFe2O3 (FeNPs), Zn0.7Fe2.3O4 (ZnNPs), and Mn0.4Fe2.6O4 (MnNPs) – synthesised through a microwave-assisted polyol route, functionalized with citric acid to improve colloidal stability, were evaluated for their potential (geno)toxic effects in an advanced in vitro 3D cell model, HepG2 spheroids.

DNA damage induction was studied using the alkaline comet assay. After 24 and 96 hours of exposure, spheroids were dissociated into a single-cell suspension by collagenase treatment. Each spheroid was incubated in 0.25% trypsin–EDTA for 3 minutes and then gently dissociated into a single-cell suspension using cut pipette tips. After this the comet assay was conducted under conditions described in the Supplement material (Table 1). The cell suspension was combined with 1% low-melting-point (LMP) agarose and layered onto fully frosted slides pre-coated with 1% normal-melting-point (NMP) agarose. Slides were lysed, the nucleoids unwound and electrophoresis preformed, followed by neutralisation of the gells.

Table 1: Comet assay conditions.






Phase



Buffer composition



Conditions





Cell lysis



0.1 M EDTA, 2.5 M NaOH, 0.01 M Tris, 1% Triton X-100



 pH 10, 4 °C, 60 min





Unwinding



300 mM NaOH, 1 mM EDTA



pH 13, 4 °C, 20 min





Electrophoresis



300 mM NaOH, 1 mM EDTA



25 V and 300 mA (0.5–1 V/cm),

4 °C, 20 min





Neutralization



0.4 M Tris 



pH 7.5, 4 °C, 15 min





For comet scoring, gells were stained using the GelRed nucleic acid stain (Biotium, USA) according to the manufacturer's instructions. Analysis and scoring were performed using a fluorescent microscope and Comet Assay IV software (Instem, Philadelphia, USA). A positive (30 and 5 µM benzo[a]pyrene; BaP for 24 and 96 hours, respectively) control was included. Each experiment was conducted independently three times, analysing 50 nuclei per experimental point from a poled sample of 3-4 spheroids. The datasets represent the exported analysis performed in Comet Assay IV.
DOI: 10.13145/bacdive6766.20250331.9.3
title: Legionella waltersii Benson et al. 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive6766.20251217.10
title: Legionella waltersii Benson et al. 1996

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.