cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13083518.v1
title: Supplementary Material for: Liver Regeneration and Recanalization Time Course following Repeated Reversible Portal Vein Embolization in Swine

description: <b><i>Introduction:</i></b> Portal vein embolization (PVE) is an accepted technique to preoperatively increase the volume of the future remnant liver before major hepatectomy. A permanent material is usually preferred since its superiority to induce liver hypertrophy over absorbable material has been demonstrated. Nevertheless, the use of an absorbable material generates a reversible PVE (RPVE) capable of inducing significant liver hypertrophy. In small animal models, the possibility to proceed to a repeated RPVE (RRPVE) has shown to boost liver hypertrophy further. The aim of this preliminary study was to assess the feasibility and the tolerance of RRPVE in a large animal model, in comparison with permanent PVE (PPVE) and single RPVE. <b><i>Methods:</i></b> Six swine (2 per group) were assigned either to single RPVE group (using powdered gelatin sponge), RRPVE group (2 RPVEs separated by 14 days) or PPVE group (using N-butyl-cyanoacrylate). The feasibility and tolerance of the procedures were evaluated using portography, liver function tests and histological analysis. Evolution of liver volumes was assessed with volumetric imaging by computed tomography. <b><i>Results:</i></b> Embolization of portal branches corresponding to 75% of total liver volume was performed successfully in all animals. Procedures were well tolerated, inducing moderate changes in portal pressure and transient aminotransferase increase. None of the animals developed portal vein thrombosis. After RPVE, complete recanalization occurred at day 11. RRPVE showed a trend for higher hypertrophy, the non-embolized liver to total liver ratio reaching 5.2 ± 1.0% in the RPVE group, 6.8 ± 0.1% in the RRPVE group and 5.0 ± 0.3% in the PPVE group. <b><i>Discussion/Conclusion:</i></b> In this preliminary comparative study, RRPVE was as feasible and as well tolerated as the other procedures, and resulted in higher liver hypertrophy.
DOI: 10.6084/m9.figshare.26411605.v1
title: Jatropha curcas (var.CN) assembly

description: We report ~339 Mbp draft whole genome sequence of <i>J. curcas</i> var. Chai Nat using both the PacBio and Illumina sequencing platforms.<br>NCBI Accession PRJNA399212NCBI biosamples SAMN07527287 ­­Organism: Jatropha curcas­Tax ID: 180498­<br>Publications Ha J <i>et al.,</i> "Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits.", <i>Plant Biotechnol J</i>, 2019 Feb;17(2):517-530
DOI: 10.17632/h637nw6kxk
title: LINF_160020500

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.c.3599471_d6.v1
title: Additional file 7: Table S1. of Estimating the accuracy of muscle response testing: two randomised-order blinded studies

description: Demographics of Practitioners - Experiments 1 & 2. Table S2. 2x2 Table for MRT for each Pair (n=48) in Experiment 1. Table S3. Correlations (r) with p-values among MRT. Table S4. 2x2 Tables for MRT for each Pair in Experiment 2 (n=20). Table S5. Correlations (r) among MRT Accuracy and Practitioner haracteristics for Experiments 1 & 2. p(2-tailed)&lt;0.05. (XLS 75 kb)
DOI: 10.17632/rh37cdm9hv
title: Data for: QEMSCAN as a method of semi-automated crystal size distribution analysis: Insights from Apollo 15 mare basalts

description: Data collected for the manuscript 'QEMSCAN as a method of semi-automated crystal size distribution analysis: Insights from Apollo 15 mare basalts'. In this study we investigate the feasibility of using Quantitative Evaluation of Minerals by SCANing electron microscopy (QEMSCAN) for semi-automated crystal size distribution analysis. Presented here are full resolution backscattered electron (BSE) maps, QEMSCAN mineral phase maps and QEMSCAN-derived energy dispersive x-ray (EDS) maps collected as part of this project. Backscattered electron (BSE) maps of each sample were gathered using a FEI QUANTA 650 field emission gun (FEG) scanning electron microscope (SEM) at the University of Manchester. The FEI QEMSCAN at the University of Manchester operates using the same QUANTA 650 FEG SEM, equipped with a single Bruker XFlash energy dispersive X-ray spectrometer (EDS), at an accelerating voltage of 25 kV and a 10 nA beam current. This set-up was used to collect QEMSCAN data in field scan mode, which produces full images of each field of the sample block, giving both qualitative major element chemical maps and a mineral phase map of the full thin section. Mineral phase maps of each sample were acquired using step sizes (i.e. pixel sizes) of 5, 10 and 20 microns (referred to as Q5, Q10 and Q20). The EDS maps were produced using the 5 micron step-size QEMSCAN field scans for each sample. The data are divided into folders based on sample thin section number.
DOI: 10.6084/m9.figshare.11839323.v1
title: Illapel_Tsunami_2015_Road_Dataset.csv

description: Field survey data of impacted roads for the 2015 Illapel Tsunami, Coquimbo and La Serena, Chile.
DOI: 10.6084/m9.figshare.28760363.v3
title: LUSC

description: LUSC,SCC
DOI: 10.25387/g3.25724259.v1
title: Assembly and Annotation for Albuja-Quintana et al., 2024

description: Genone assembly and annotation of <em>Vaccinium floribundum </em>Kunth, an emblematic Andean species. Assembly was performed with Flye (ONT long-reads) and polished with Medaka (ONT long-reads) and Polca (Illumina short-reads). Genome annotation was performed with Maker.
DOI: 10.6084/m9.figshare.25024817.v1
title: Replication Package: Quantum vs. Classical Machine Learning Algorithms for Software Defect Prediction

description: To replicate this study following steps needed to be completed. Install a python virtual environmentActivate the virtual environmentinstall the following python packages into the environment: pip <b>install </b>numpy<br>pip <b>install </b>pandas<br>pip <b>install </b>qiskit_algorithms<br>pip <b>install </b>scikit-learn<br>pip <b>install </b>qiskit_machine_learning<br>pip <b>install </b>libsvm<br>packages can also be installed from the <b>requirements.txt</b> fileAfter installing all the required packages, you can replicate the experiment by downloading the content of the archive: <b>qml_cml_replication.zip </b>and running the Python file <b>r</b><b>un_replication.py</b>
DOI: 10.6084/m9.figshare.27135003.v1
title: Supplementary Material for: Syringotropic Lichen Planus an Unusual Presentation of a Common Dermatosis: A report of 2 cases

description: Abstract:
Introduction: Lichen planus (LP) is a chronic inflammatory dermatosis that causes plaques and itchy papules on the skin, as well as erosion and ulcers in the mucous membranes. LP is characterized by a dense dermal T-cell infiltration. Perieccrine inflammation can be seen in a variety of dermatoses, but genuine lymphocyte permeation of the secretory coil or lymphocytic syringotropism is a rare sign that is typically seen in mycosis fungoides.
Case Presentation: In this study, we present two uncommon instances of lymphocytic syringotropism in lichen planus. Histopathological examination revealed dense T-cell infiltration and lymphocytic involvement of eccrine glands, confirming syringotropism.
Conclusion: Lymphocytic syringotropism is an uncommon finding in lichen planus. Its presence broadens the histopathological spectrum of LP and highlights the need to differentiate it from lymphoproliferative disorders like mycosis fungoides.
DOI: 10.6084/m9.figshare.3529961.v1
title: Appendix A. The MaxEnt machinery.

description: The MaxEnt machinery.
DOI: 10.6084/m9.figshare.28072160.v1
title: Data of Manuscript_Morphological and mechanical symmetry of the quadriceps and hamstrings in athletes

description: Data of Manuscript_Morphological and mechanical symmetry of the quadriceps and hamstrings in athletes<br>
DOI: 10.6084/m9.figshare.20316945.v1
title: Table 1

description: Details of primer pairs used in the manuscript
DOI: 10.17632/8f435gyybb
title: Traced Retinal Ganglion Cells - RGCtypes.org

description: Traces of retinal ganglion cells included in our published Cell Reports paper, Goetz et al., 2022.
DOI: 10.6084/m9.figshare.24905154.v1
title: Effect of topically-applied milrinone or nitroglycerin on internal mammary artery free flow

description: Surgical mobilization of the internal mammary artery (IMA) can induce graft vasospasm, which is commonly managed by wrapping the IMA in a vasodilator-soaked swab before grafting. However, the choice of the most effective topical vasodilator remains the subject of continued investigation. We carried out a prospective randomized controlled trial to compare the effect of topically-applied milrinone, nitroglycerin and normal saline on IMA free flow.<b><i>Methods </i></b>Forty-six consecutive patients undergoing elective primary coronary artery bypass grafting were enrolled. After the left IMA was harvested, free flow was measured under controlled hemodynamic conditions before any intervention (flow 1) and at a mean of 12.5 minutes after the topical application of one of three agents (milrinone, nitroglycerin or normal saline) on the IMA (flow 2).<b><i>Results </i></b>All agents induced a significant increase in IMA flow, and flow 2 was significantly higher in the nitroglycerin and milrinone groups compared to the normal saline group, even while controlling for flow 1 as a centered continuous variable. Nevertheless, there was no statistically significant difference in flow 2 between the nitroglycerin and milrinone groups.<b><i>Conclusions</i></b>Topically-applied milrinone and nitroglycerin can increase blood flow of the IMA significantly in the early period after surgical mobilization. IMA blood flow was greater after the topical application of milrinone compared to nitroglycerin, but this has failed to reach statistical significance in the present study setting.
DOI: 10.6084/m9.figshare.25942699.v3
title: Dataset_1

description: EMGs and Kinematics from Dataset 1 (see Fig.5) of the following manuscript:https://www.biorxiv.org/content/10.1101/2023.11.30.569159v2.
DOI: 10.6084/m9.figshare.28760363.v2
title: LUSC

description: LUSC,SCC
DOI: 10.6084/m9.figshare.12937013.v1
title: Distinct response of gross primary productivity in five terrestrial biomes to precipitation variability

description: Code and datasets used in the article "Distinct response of gross primary productivity in five terrestrial biomes to precipitation variability"
DOI: 10.6084/m9.figshare.28004150.v1
title: Oshea_etal_CellRep_2025_data

description: Data to recreate figures from O'Shea et al., 2025 "Luminance invariant encoding in mouse visual cortex".
DOI: 10.6084/m9.figshare.26356171.v1
title: Supplementary Tables.xlsx

description: Supplementary Table I: Summary of samples, site number (where applicable), their colour pattern, predicted traditional and geometric subspecies (colour pattern codes; 1: 100% black, 2: 70-90% black, 3: 40-60% black/yellow, 4: 70-90% yellow & 5: 100% yellow).<br><br>Supplementary Table II: Discriminant functions for classification of samples to honey bee subspecies using traditional morphometry data.<br>Supplementary Table III: Discriminant functions for classification of samples to honey bee subspecies using geometric morphometry data.
DOI: 10.6084/m9.figshare.5388085.v3
title: Fake News Game Data

description: Raw data accompanying Roozenbeek & van der Linden (2017).<br>
DOI: 10.6084/m9.figshare.25678434.v1
title: Supplementary Material for: Blood profiles of community-dwelling people with sarcopenia: analysis based on the China Health and Retirement Longitudinal Study

description: Introduction
Routine blood factors can be economic and easily accessible candidates for sarcopenia screening and monitoring. The associations between sarcopenia and routine blood factors remain unclear. This study aimed to examine sarcopenia and blood factor associations based on a nation-wide cohort in China.
Methods
1307 participants and 17 routine blood indices were selected from two waves (Year 2011 and Year 2015) of the China Health and Retirement Longitudinal Study (CHARLS). The diagnosis of sarcopenia was based on the criteria proposed by Asian Working Group for Sarcopenia (AWGS 2019). Generalized mixed-effects models were performed for association analyses. A logistic regression (LR) model was conducted to examine the predictive power of identified significant blood factors for sarcopenia.
Results
A higher sarcopenia risk was cross-sectionally associated with elevated blood concentrations of high-sensitivity C-reactive protein (hsCRP) (OR = 1.030, 95%CI [1.007, 1.053]), glycated hemoglobin (HbA1c) (OR = 1.407, 95%CI [1.126, 1.758]) and blood urea nitrogen (BUN) (OR = 1.044, 95%CI [1.002, 1.089]), and a decreased level of glucose (OR = 0.988, 95%CI [0.979, 0.997]). A higher baseline hsCRP value (OR = 1.034, 95%CI [1.029, 1.039]) and a greater over time change in hsCRP within four years (OR = 1.034, 95%CI [1.029, 1.039]) were associated with a higher sarcopenia risk. A higher BUN baseline value was related to a decreased sarcopenia risk over time (OR = 0.981, 95%CI [0.976,0.986]), while a greater over time changes in BUN (OR = 1.034, 95%CI [1.029,1.040]) and a smaller over time change in glucose (OR = 0.992, 95%CI [0.984, 0.999]) within four years were also related to a higher sarcopenia risk. LR based on significant blood factors (i.e., hsCRP, HbA1c, BUN, and glucose), and sarcopenia status in Year 2015 yielded an area under the curve (AUC) of 0.859 (95% CI 0.836-0.882).
Conclusion
Routine blood factors involved in inflammation, protein metabolism, and glucose metabolism are significantly associated with sarcopenia. In clinical practice, plasma hsCRP, BUN, blood sugar levels, sex, age, marital status, height, and weight might be helpful for sarcopenia evaluation and monitoring.
DOI: 10.6084/m9.figshare.28801937.v1
title: Additional file 1 of Germany’s established non-native species: a comprehensive breakdown

description: Additional file 1.
DOI: 10.6084/m9.figshare.27823726.v1
title: Additional file 1 of Serum microRNA qPCR profiling and validation indicate upregulation of circulating miR-145-5p and miR-26a-5p in migraineurs

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28365482.v1
title: Cohort called vcf of 421 yeasts

description: Cohort called vcf containing 421 yeast genomes
DOI: 10.6084/m9.figshare.5902945.v1
title: TrewinThesis_HistoricalMarginalDetections.xlsx

description: Database of <i>Aedes aegypti </i>historical presence at cold range margins across all continents where present. Database was constructed for modelling by Brendan Trewin for his PhD thesis.
DOI: 10.6084/m9.figshare.21674543.v1
title: spinach

description: spinach, downy mildew, disease resistance,molecular marker; breeding
DOI: 10.6084/m9.figshare.28910849
title: public content in 202505

description: public content in 202505
DOI: 10.17632/gjdd5r4ywf
title: sea spray aerosol number size distribution study

description: This dataset reports the results of in situ measurements of aerosol hygroscopic kappa probability density function, aerosol chemical composition, aerosol number size distribution from 2010 to 2014 at Mace Head Research Station(53.33° N, 9.90 °W; 21m a.m.s.l; 300m from the waterline).
DOI: 10.17632/j64r72zyz2
title: OSM worship data Pakistan

description: This is a worship data from OSM of Pakistan. It is in SQL format for postgresql with postgis extension enabled.
DOI: 10.6084/m9.figshare.28843001.v1
title: Table S2 - subset cluster markers.xlsx

description: single cell RNA sequencing data of mouse ovary with and without gonadotropin stimulation
DOI: 10.6084/m9.figshare.1294983.v3
title: Breast cancer data from TCGA for machine learning exercise

description: I accessed the data used in this publication (https://tcga-data.nci.nih.gov/docs/publications/brca_2012/) and parsed the clinical data to determine which patients were HER2 positive. I then extracted gene-expression data for these patients and created a matrix that indicates expression levels for all genes with no missing values. The first row indicates HER2 status (1 = positive, -1 = negative)
DOI: 10.6084/m9.figshare.28789940.v2
title: Cortical_Patches_of_Space_Fig6_Sleep

description: Large processed data that could not be uploaded to Github.
DOI: 10.6084/m9.figshare.1394662.v1
title: Summary list of data tables

description: List summarizing the 14 data tables used in our molecular study of bison diet and gut microbiome at Konza Biological Station in 2011.
DOI: 10.6084/m9.figshare.28776056.v1
title: knees data.zip

description: Knee Osteoporotisi Data
DOI: 10.6084/m9.figshare.19596643.v1
title: Supplementary Material for: Development and external validation of the Munich Sorafenib Evaluation Score for hepatocellular carcinoma

description: Introduction: In recent years increasing options for systemic HCC treatment have become available. The development of therapy-specific prognostic scores has been encouraged. Tailoring therapy to individual patients requires prognostic scores for treatment success in addition to the Barcelona-Clinic-Liver-Cancer (BCLC) classification. We have developed and validated a prognostic score for patients treated with sorafenib. Methods: Prognostic factors identified in a multivariate analysis of 108 sorafenib patients were used to construct the Munich-Sorafenib-Evaluation score (M-SE). M-SE and 9 established HCC prognostic systems were ranked according to concordance-index and AIC. External M-SE-validation was performed in an independent HCC sorafenib cohort (n=101) derived from the prospective multicentre randomized controlled SORAMIC trial. Results: Ascites (p&lt;0.0001; HR 2.923), tumor burden ≥50% of the liver (p=0.0033; HR 1.946) and GOT (p&lt;0.0001; HR 1.716) were identified as independent prognostic parameters. All three M-SE stages were characterized by significantly different survival times (p&lt;0.0001). M-SE stage A patients had a median OS of 18.7 months (95% CI 15.6-21.8), patients in stage B and C showed a significantly shorter survival of 5.7 (2.7-8.7) and 2.0 months (1.6-2.4), respectively. M-SE (c-index 0.70; AIC 621) outperformed all other prognostic systems. External validation in a prospective cohort confirmed its superior prognostic performance. Conclusion: The M-SE score allows classification of sorafenib-patients in three distinct prognostic stages. Provided that M-SE successfully passes prospective validation, it can help to predict the outcome of patients evaluated for sorafenib treatment.
DOI: 10.6084/m9.figshare.14428331.v4
title: Fig. 2b

description: PBMCs from healthy donors were incubated with <sup>51</sup>chromium-loaded C1R tumor cell line expressing MICA*001 or MICB*002 in the presence of a range of doses of MICAB1 Fc-engineered or isotype control mAb. After four hours, <sup>51</sup>chromium levels in the supernatants were determined. The data shown are representative of three independent experiments
DOI: 10.17632/fvdjc6d9vm
title: Data for: Performance improvement of nitrogen dioxide gas sensors based on novel p-n heterojunction gold black/VOx bi-sensing membranes

description: Raw data.
DOI: 10.6084/m9.figshare.20311821.v1
title: Using chemical genomics to study environmental toxins and mycoparasitic interaction

description: The attached data file is a list of yeast <em>Saccharomyces cerevisiae</em> sensitive/resistant deletion mutant strains in chemical genomics screens (homozygous profiling). Here, the following compounds were screened: 1. N-nitrosodimethylamine (NDMA). 2. N-nitrosodiethylamine (NDEA). 3. N-nitroso-N-methyl-4-aminobutyric acid (NMBA). 4. N,N-dimethylformamide (DMF). 5. Methylamine. 6. Ethylamine. 7. Formamide. 8. Formaldehyde. 9. 4-nitroquinoline-1-oxide (4NQO). 10. Ammonium sulfate. 11. Ascorbic acid*. 12. Ferulic acid*. *Added in cells treated with NDMA or NDEA; there is also control having only ascorbic and/or ferulic acid. Some compounds were screened more than once, and the dose and date for each analysis were included. This repository is created for my thesis (“Understanding cellular response to drugs and toxins with yeast genomics tools” by Joseph Uchechukwu Ogbede) though the data is already published in “Ogbede, J.U., Giaever, G. & Nislow, C. A genome-wide portrait of pervasive drug contaminants. Sci Rep 11, 12487 (2021). https://doi.org/10.1038/s41598-021-917”. In the file name ‘Yeast-predation-screens’, the deletion mutants of <em>Saccharomyces cerevisiae</em> were competitively grown with <em>Saccharomycopsis schoenii</em> for 12 and 24 hrs. The data revealed several deletion mutants (hits) of <em>S. cerevisiae</em> that are sensitive or resistant when exposed to <em>S. schoenii</em> predation (mycoparasitic interaction). The data is being prepared (alongside wildtype <em>S. cerevisiae </em>vs<em> S. schoenii</em> interaction transcriptomics data) for publication.
DOI: 10.6084/m9.figshare.27303969.v1
title: Insight into Greenhouse Gas Emission Characteristics of Light-Duty Vehicles in China Driven by Technological Innovation

description: Greenhouse gas (GHG) emissions represent a pivotal driver of global climate change, with vehicular emissions, particularly from light-duty vehicles, emerging as a prominent source of GHGs. Despite extensive research on gaseous pollutants, studies on GHG emissions within the framework of carbon neutrality remain scarce. This study delves into the emission characteristics of three primary GHGs (CO<sub>2</sub>, CH<sub>4</sub>, and N<sub>2</sub>O) from various light-duty vehicles, encompassing conventional gasoline and hybrid vehicles, and bi-fuel taxis. As anticipated, with advancements in emission standards and powertrains, vehicular GHG emissions have significantly decreased. However, our findings also revealed surprising trends. While engine technology upgrades reduced CO<sub>2</sub>, they unexpectedly increased CH<sub>4</sub> and N<sub>2</sub>O emissions. Additionally, hot starts, beneficial for reducing CO<sub>2</sub> and CH<sub>4</sub> emissions, caused heightened N<sub>2</sub>O emissions, which is noteworthy under operating conditions with frequent start-stop events. Intriguingly, compressed natural gas (CNG), generally perceived as cleaner, increased CH<sub>4</sub> emissions. Under “TWC failed” conditions, N<sub>2</sub>O emissions from CNG-powered vehicles were approximately three times higher than those under “TWC worked” conditions, attributed to the significant increase in NOx. Considering the global warming potential (GWP), the "TWC failure" scenario paradoxically decreased GWP values, highlighting the complex interaction between emission control technologies and their environmental impacts. This study provides crucial insights into vehicular GHG emissions, which are essential for developing effective strategies aimed at mitigating emissions and enhancing the efficiency of emission control systems.