cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.7117c/5
title: Nephila senegalensis SIZE data

description: This is an original dataset providing data on adult size in the study species Nephila senegalensis.
DOI: 10.5061/dryad.7117c/6
title: Nephila senegalensis WEIGHT data

description: This is an original dataset providing data on adult weight in the study species Nephila senegalensis.
DOI: 10.5061/dryad.7k82t/4
title: supplementary video V4 (backward tripod-like coordination)

description: Shown is an ant in backward locomotion. Generally, a detailed analysis of the ants’ inter-leg coordination revealed an irregular locomotion during backward walking. However, in this video we find the tendency that the legs of one tripod group are swinging more or less simultaneously. This indicates that backward tripod coordination is per se possible.
DOI: 10.5061/dryad.84q2t/1
title: bait checks Nov. 5, 2013, May 30, and Oct. 2014 with zeros

description: All plots were baited for ants several times to determine the presence and abundance of fire ants and other ants.
DOI: 10.5061/dryad.84q2t/2
title: NMQsurvival

description: The results of checks for the survival of newly mated fire ant queen planted in all plots.
DOI: 10.5061/dryad.8m201/1
title: Sampling sites with coordinates

description: Description of the sampling sites and their correct GPS coordinates
DOI: 10.5061/dryad.bf74g/1
title: Protein Sequence of Serine Proteases of Purpureocillium_lilacinum_TERI_BC1

description: A total of 44 serine protease sequences present in Purpureocillium lilacinum genome are provided here.
DOI: 10.5061/dryad.gc60p/1
title: wingspot_data

description: This file includes data about age, reproductive performance, survival, and plumage signal traits of common gulls.
DOI: 10.5061/dryad.gd74v/14
title: parse_tree_check_outparalogs

description: Perl script to identify putative instances of paralogy by testing the monophyly of a specified clade on gene trees.
DOI: 10.5061/dryad.gd74v/15
title: Supplementary Information, Tables and Figures
DOI: 10.5061/dryad.kc811/1
title: read me file

description: Description of data files and location of variable descriptions.
DOI: 10.5061/dryad.kc811/2
title: NMDS analyses R script

description: Word document with R scripts for non-metric multidimensional scaling (NMDS) graph of vegetation sample dissimilarities with best correlating environmental variables plotted as vectors.
DOI: 10.5061/dryad.kc811/3
title: NMDS vegetation dataset

description: vegetation data matrix (note: data variables are described on pg 1 in “NMDS analyses R script”)
DOI: 10.5061/dryad.kc811/4
title: NMDS environmental dataset

description: environmental data matrix (note: data variables are described on pg 1 in “NMDS analyses R script”)
DOI: 10.5061/dryad.kc811/5
title: regression analyses R script

description: Word document with R script examples of regressions analyses and spatial autocorrelation tests
DOI: 10.5061/dryad.kc811/6
title: regression (plant and soil property) data file

description: plant and soil properties data (note: data variables are described on pg1 in “regression analyses R script”)
DOI: 10.5061/dryad.mj0sf/1
title: Plant community data from three greenhouse mesocosm experiments (tallgrass prairie, alpine tundra, desert grassland) manipulating nitrogen, competition, and soil microbes

description: Data are from three greenhouse mesocosm experiments representing three different systems: tallgrass prairie, alpine tundra, desert grassland. Treatments were nitrogen fertilization, competition (planting density), and soil microbes (microbes from control or fertilized field plots). Each mesocosm consisted of a mix of 9 species. Data collected were the following: biomass (above + below ground) of each species in each mesocosm, total mesocosm biomass, diversity, evenness, richness.
DOI: 10.5061/dryad.mp745/1
title: Datafile_21SSRs_533ramets

description: Genotype of 533 ramets with 21 nuclear SSRs
DOI: 10.5061/dryad.mp745/2
title: Datafile_52SSRs_137inds

description: Genotype of 137 individuals with 52 nuclear SSRs
DOI: 10.5061/dryad.n8s3c/1
title: Antarctic fur seal data

description: Data was collected on Antarctic fur seal females during the breeding season on Kerguelen Island, Southern Ocean on The Pointe Suzanne colony from a Daily Diary tag from Wildlife Computers. Column headings include "Date", "Time", "Depth", "Temperature", "aX", "aY", "aZ", "Light", "Velocity", "WetDry", "WetDrytxt". aX, Y, Z refer to the acceleration recorded on the 3 body axes.
DOI: 10.5061/dryad.n8s3c/6
title: Northern fur seals data

description: Data was collected on northern fur seal females during the breeding season on St Paul island, Bering Sea, Alaska from a daily Diary tag from Wildlife Computers. Column headings include "Date", "Time","Depth", "External Temperature", "int mX", "int mY", "int mZ", "int aX", "int aY", "int aZ", "Light Level", "Velocity", "Wet/Dry", "Wet/Dry", "Hour", "Battery Voltage", "Protocol". int mX, Y, Z refer to magnetic field recorded on the 3 body axes, and int aX, Y, Z to the acceleration recorded on the same axes.
DOI: 10.5061/dryad.qb87r/1
title: Taxidea taxus microsatellite genotypes

description: Microsatellite genotypes at 20 loci for 236 samples from eight regions of the American badger. Storage data format: genepop. See publication for details of sampled regions.
DOI: 10.5061/dryad.qt745/1
title: pedigree file

description: Pedigree file for quantitative genetic analyses. Contains 3 columns: ID, Sire and Dam.
DOI: 10.5061/dryad.qt745/2
title: Phenotypic and environmental data for quantitative genetic analyses

description: Phenotypic and environmental data for quantitative genetic analyses. See readme file for description of columns.
DOI: 10.5061/dryad.qt745/3
title: Phenotypic and fitness data for selection analyses

description: Phenotypic and fitness data for selection analyses. columns are: ID: Animal ID, sex: sex of individual, wing: wing length, tars: tarsus length, bd: bill depth, bl: bill length, LRS: Lifetime reproductive success, longevity: Longevity, MRS: Mean annual reproductive success. See article for details.
DOI: 10.5061/dryad.s3015/1
title: Data files and Rscripts - part4

description: Rates of shrubland/forest expansion, temporal and spatial ecotone beta-diversity and changes in Community soil moisture values + R scripts - part4. See README file for further details
DOI: 10.5061/dryad.s3015/2
title: Data files and Rscripts - part1

description: Rates of shrubland/forest expansion, temporal and spatial ecotone beta-diversity and changes in Community soil moisture values + R scripts - part1. See README file for further details
DOI: 10.5061/dryad.s3015/3
title: Data files and Rscripts - part2

description: Rates of shrubland/forest expansion, temporal and spatial ecotone beta-diversity and changes in Community soil moisture values + R scripts - part2. See README file for further details
DOI: 10.5061/dryad.s3015/4
title: Data files and Rscripts - part3

description: Rates of shrubland/forest expansion, temporal and spatial ecotone beta-diversity and changes in Community soil moisture values + R scripts - part3. See README file for further details
DOI: 10.5061/dryad.tq0g0/1
title: anolis target capture phylogeography dryad

description: Directory 1: Sequence alignments; Directory 2: Species trees, multilocus bootstraps, gene tree bootstraps; Directory 3: concatenated RAxML analysis output; Directory 4: Treemix output and bootstraps; Directory 5: SVDquartets input and output files; Directory 6: Genealogical sorting index output; Directory 7: extended Bayesian skyline plots input (xml) and output (txt) files; Directory 8: GPhoCS input, control, output, and log files
DOI: 10.5061/dryad.1ms70/1
title: Simulation Scripts

description: Python scripts used for simulation and analysis.
DOI: 10.5061/dryad.20ck4/1
title: Microsatellite data

description: This MSExcel file contains the microsatellite data used to run the clustering analyses.
DOI: 10.5061/dryad.2kd28/19
title: Table_S7

description: Results for 60 species based on Tree 2 of Spriggs et al. [2] for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12), including estimated node ages, future rates of climate change projected for the year 2070 within their geographic range (for the maximum, median, and minimum estimated rate among projections: max med, min), past rates of climatic niche change based on the best-fitting model of trait evolution, absolute differences in mean values (among localities) for the climatic variables for each species pair, and differences between projected rates of climate change and the past rates of niche change.
DOI: 10.5061/dryad.2kd28/20
title: Table_S8

description: Results of tests of the relationship between species age and rates of niche change for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12). Species ages and niche rates for all climatic variables initially failed the Shapiro-Wilk test for normality. Therefore results presented here are either ordinary-least squares (OLS) regressions after ln-transforming ages and nich rates, or (when one or both variables were still non-normal after ln-transformation), from a non-parametric test (Spearman’s rank correlation; SR).  All OLS relationships are negative.  Shapiro-Wilk test results are for the ln-transformed variables.
DOI: 10.5061/dryad.2kd28/21
title: Table_S9

description: Summary of the number of species in which niche divergence between sister species differs by less than the magnitude of expected change under different climate scenarios representing the minimum, median, and maximum levels of change for each climatic variable (MAT = mean annual temperature, Bio1; TMAX = maximum temperature of the warmest month, Bio5; TMIN = minimum temperature of the coldest month, Bio6; MAP = mean annual precipitation, Bio12).  Species number indicates the total number of species in our analysis from each tree.
DOI: 10.5061/dryad.2kd28/22
title: Table_S10

description: Summary of the impact of excluding species with one or more non-native localities on the difference in rates between past niche change among species and future climate change. Results shown are mean differences in rates among species for the intermediate model of future climate change, n is the number of species included in the comparison. “All species” are the original analyses, including species with some non-native localities. “Native only” indicates results after removing all species with any non-native localities. In the “Mostly native” comparisons, species with non-native localities were retained if they had similar mean values for climatic variables after the non-native localities were removed (i.e. all temperature variables differed by no more than 1°C when non-natives were removed).
DOI: 10.5061/dryad.2kd28/23
title: Table_S11

description: Same as Table S5 (Tree 2010), but excluding species with any non-native localities.
DOI: 10.5061/dryad.2kd28/24
title: Table_S12

description: Same as Table S5 (Tree 2010), but excluding only species with substantial differences in mean values for one or more temperature variables after removing non-native localities (difference &gt;1°C). Species with one or more non-native localities are highlighed in yellow.
DOI: 10.5061/dryad.2kd28/25
title: Table_S13

description: Same as Table S6 (Tree 2014-1), but excluding species with any non-native localities.
DOI: 10.5061/dryad.2kd28/26
title: Table_S14

description: Same as Table S6 (Tree 2014-1), but excluding only species with substantial differences in mean values for one or more temperature variables after removing non-native localities (difference &gt;1°C). Species with one or more non-native localities are highlighed in yellow.
DOI: 10.5061/dryad.2kd28/27
title: Table_S15

description: Same as Table S7 (Tree 2014-2), but excluding species with any non-native localities.
DOI: 10.5061/dryad.2kd28/28
title: Table_S16

description: Same as Table S7 (Tree 2014-2), but excluding only species with substantial differences in mean values for one or more temperature variables after removing non-native localities (difference &gt;1°C). Species with one or more non-native localities are highlighed in yellow.
DOI: 10.5061/dryad.2rs41/10
title: Normalized RNA-seq fpkm values

description: Tab-delimited file containing normalized fpkm values obtained from the RNA-seq experiments in 3 brain tissues, after normalization across samples. The fpkm values for the 3 brain tissues have been combined into a single file. Each row corresponds to a sample, and each column corresponds to a gene. The brain tissue for each measurement is indicated by  column header. A suffix of .HIP is added to the gene names for hippocampus measurements, .STR for the striatum, and .PFC for the prefrontal cortex. This file only includes data for genes with mean fpkm &gt; 1 prior to normalization.
DOI: 10.5061/dryad.2rs41/8
title: Genotype calls from prefrontal cortex RNA-seq data

description: VCF file containing the genotypes at SNPs identified from RNA-seq data in the prefrontal cortex. Genotypes and allele counts in this VCF file are used for analyzing allele-specific expression in the prefrontal cortex.
DOI: 10.5061/dryad.2rs41/9
title: Genotype calls from striatum RNA-seq data

description: VCF file containing the genotypes at SNPs identified from RNA-seq data in the striatum. Genotypes and allele counts in this VCF file are used for analyzing allele-specific expression in the striatum.
DOI: 10.5061/dryad.2sh53/1
title: Microsatellite data for Gambusia spp.

description: Microsatellite data for Gambusia spp. "N/A" refers to missing data.
DOI: 10.5061/dryad.2sh53/2
title: Dryad_Gambusia and Poecilia LHs

description: Llife-history data used for the analyses in the publication. Data codes are explained on the last spreadsheet.
DOI: 10.5061/dryad.2sh53/3
title: Dryad_Gambusia and Poecilia Landmarks

description: Landmark data used for geometric morphometric analyses in the publication. Data codes are explained on the last spreadsheet.
DOI: 10.5061/dryad.34s63/1
title: Genpop on the Web data file - Microsatellite genotypes

description: Genpop on the Web data file - Microsatellite genotypic data of wild and colony mosquitoes.
DOI: 10.5061/dryad.34s63/2
title: JavaScript for Nested donut (pie) charts

description: Replace JS in the example chrt at: http://codepen.io/amcharts/pen/787aea8ba37ca13fe749093282a9fbf3?editors=001 with the script in this file to obtain one of the pie charts in the paper.
DOI: 10.5061/dryad.3574r/6
title: Pairwise matrix of MHC dissimilarity for female-female dyads

description: Values calculated from UniFrac amino acid distances.
DOI: 10.5061/dryad.3574r/7
title: Pairwise matrix of MHC dissimilarity for male-male dyads

description: Values calculated from UniFrac amino acid distances.
DOI: 10.5061/dryad.3574r/8
title: Pairwise matrix of MHC dissimilarity for male-female dyads

description: Values are calculated from UniFrac amino acid distances.
DOI: 10.5061/dryad.492b8/7
title: Microsatellite genotypes for Mastomys natalensis (full dataset)

description: The full microsatellite dataset used in this study for the statistical and STRUCTURE analyses. Multilocus genotypes (nine microsatellite loci) for 260 Mastomys natalensis samples collected from the Hluhluwe-iMfolozi Park.
DOI: 10.5061/dryad.5g129/2
title: Pearl millet SSR

description: Dataset of the 286 pearl millet samples and the 10 SSRs. The variety, site and farm where the plant was collected are provided.
DOI: 10.5061/dryad.6j018/1
title: Conjugate Characterization - Data and Graphs

description: This file contains HPLC chromatograms and compiled numerical data concerning the characterization (drug:ab and fluorophore:ab ratios) of conjugates synthesized in this study (Fig 1 and Table 1).
DOI: 10.5061/dryad.6j018/2
title: Conjugate Characterization - Linker Stability

description: This file contains all HPLC chromatograms, graphs and computations for determining antibody-drug linker stability of the fluorescent antibody drug conjugate as described in the paper (Fig 2).
DOI: 10.5061/dryad.6j018/3
title: In Vitro Fluorescent Evalution - Quantitation

description: This file contains all of the raw and analyzed fluorescent quantitation data for assessing localization of conjugates with various cell lines (Fig. 3).
DOI: 10.5061/dryad.6j018/4
title: Immunofluorescence Sample Image BxPC-3 CEA 680 PTX

description: This file is a raw jpeg of an immunofluorescent image used in Fig 3, panel A.
DOI: 10.5061/dryad.6m3n9/1
title: Character descriptions

description: Descriptions of characters from the phylogenetic analysis
DOI: 10.5061/dryad.6m3n9/2
title: Gabbott_et_al_2016_mtx

description: Data matrix in NEXUS format
DOI: 10.5061/dryad.6n9h6/5
title: FIG. S2-Tetraglochin-trnL-F-Bayesian majority rule consensus tree

description: FIG. S2. Bayesian 50% majority rule consensus tree obtained from 15002 trees generated by Bayesian inference with MrBayes in the phylogenetic analysis of Tetraglochin species  using the trnL-F dataset. The values above/ below branches correspond to the Bayesian posterior probability (PP)/ parsimony bootstrap (PB). Only PP values &gt; 0.50 and PB &gt; 75% are showed. The specimens with voucher collection number were sequenced in our work.  Scale bar = 0.02 substitutions per site.
DOI: 10.5061/dryad.6n9h6/6
title: FIG. S1-Tetraglochin-MCCT-ITS

description: FIG. S1. Bayesian Maximum Clade Credibility Tree obtained from 15002 trees generated by Bayesian inference with MrBayes in the phylogenetic analysis of Tetraglochin species  using the ITS dataset. The values above/ below branches correspond to the Bayesian posterior probability (PP)/ parsimony bootstrap (PB). Only PP values &gt; 0.50 and PB &gt; 75% are showed. The specimens with voucher collection number were sequenced in our work.  Scale bar = 0.06 substitutions per site.
DOI: 10.5061/dryad.6n9h6/7
title: 7-StarBEASTLog(tetrag-ITS&trnL-19taxa_1)

description: xml file for species tree analyses using BEAST under the  hypothesis that all individuals of Tetraglochin ameghinoi  represent the same species
DOI: 10.5061/dryad.6n9h6/8
title: 8-StarBEASTLog(tetrag-ITS&trnL-19taxa_2)

description: xml for species tree analyses using BEAST under the hypothesis that Tetraglochin ameghinoi  specimens represent two different species, according to the clades obtained in the phylogenetic analyses and the morphological differentiation exhibited.
DOI: 10.5061/dryad.78vd3/1
title: Data on repeated anhydrobiosis in the tardigrade Richtersius coronifer

description: These data refer to an experiment on repeated anhydrobiosis in the tardigrade Richtersius coronifer. Specimens used in the study originate from a population at Öland, southern Sweden. The report from the analysis of these data has been submitted to PLOS ONE.
DOI: 10.5061/dryad.7k8q7/1
title: Data: Early reprod success in D. m. males is dependent on maturity of the accessory gland

description: Raw data of all behavioral experiments and size measurements of the accessory gland described in the manuscript ("Early reproductive success in Drosophila males is dependent on maturity of the accessory gland", by H. Ruhmann, K. U. Wensing, N. J.-H. and Dr. C. Fricke
DOI: 10.5061/dryad.7t457/1
title: Analysis script for Dryad Package

description: This is the analysis script that generates the figures for the publication.  It is an R script that can be copied and pasted into R, or run from the command line if the file format is changed.
DOI: 10.5061/dryad.7t457/2
title: Ex.1.pos

description: This shows how many mutations occurred at each genome position for Example 1.
DOI: 10.5061/dryad.b0846/1
title: Fish and Tank data

description: Data including the raw values of the parasite load, prey items, condition indexes, and mortality data.
DOI: 10.5061/dryad.d19j0/1
title: Single-cell genomic scaffolds from 10 'wild-caught' marine diplonemids

description: FASTA format single-cell genomic scaffolds of 10 marine diplonemid (protist) cells are presented. Scaffolds were generated with the SPAdes assembler; contaminating sequences were removed, as described in the publication. Each FASTA file is derived from a single cell. Cells are referred to by the numbers used in the publication (i.e., cells 3, 13, 21, 27, 37, 47, 1sb, 4sb, 9sb, 21sb) as no species names exist.
DOI: 10.5061/dryad.d19j0/2
title: Figure S1 (related to Figure 1). Taxon-annotated GC plots demonstrate the effectiveness of our decontamination procedure.

description: Plots were generated using blobtools (https://github.com/DRL/blobtools) for each SCG assembly before and after decontamination using the megablast/blastx protocol described in Experimental Procedures. Plots are based on megablast queries of the NCBI nt database according to taxonomic Order.
DOI: 10.5061/dryad.g81c8/10
title: Bullfrog diversity and differentiation input files

description: This folder contains the Arlequin v3.5 input files used to estimate diversity within and differentiation between introduced American Bullfrog (Lithobates catesbeianus) populations in Montana and Wyoming.  AMOVA input files used to evaluate differentiation between the introduced and native range are also provided. Results from these analyses are shown in Tables 1-3.
DOI: 10.5061/dryad.g81c8/9
title: Bullfrog cytb haplotype data

description: This file contains data on cytochrome b (cyt b) haplotypes of invasive American Bullfrogs (Lithobates catesbeianus) sampled at sites in Montana and Wyoming, with associated metadata (collection year, population/river, state, latitude, longitude, and sample size).  It also contains bullfrog native range data extracted from the text of Austin et al. 2004, including haplotype composition, region, and location (description, town, state, latitude, longitude) of each sampling site. Two data files compiling native range and introduced haplotype data are prodvided, which were used to create haplotype distribution maps (Figures 3 and S1 of Kamath et al. 2016).
DOI: 10.5061/dryad.gn4hh/2
title: Reciprocal best BLAST hits between Arabidopsis halleri and Arabidopsis thaliana

description: Reciprocal best BLAST hits between Arabidopsis halleri ssp. gemmifera Tada mine and Arabidopsis thaliana TAIR10.
DOI: 10.5061/dryad.gn4hh/3
title: Reciprocal best BLAST hits between Arabidopsis halleri and Arabidopsis lyrata

description: Reciprocal best BLAST hits between Arabidopsis halleri ssp. gemmifera Tada mine and Arabidopsis lyrata.
DOI: 10.5061/dryad.kd5s9/1
title: Silica induction in response to vole grazing in field and glasshouse

description: Data on silica concentrations in Deschampsia cespitosa in response to varying intensities of field vole grazing pressure in outdoor field enclosures at Kielder Forest England between March 2009 and April 2010 and in glasshouse experiments.
DOI: 10.5061/dryad.kg26j/1
title: Phenotype data

description: Eight traits of all the hybrids and their inbred parents
DOI: 10.5061/dryad.kg26j/2
title: SNP data

description: SNP data of 120 rice inbred lines
DOI: 10.5061/dryad.mp745/3
title: Population map files for STACKS

description: Very simple text file needed to run 'populations' command of STACKS
DOI: 10.5061/dryad.mp745/4
title: Barcodes files for STACKS

description: Very simple text files needed to run 'process_radtags' command of STACKS
DOI: 10.5061/dryad.mp745/5
title: GBS fastq files (1/2)

description: Raw GBS compressed fastq files (n=10), to process with STACKS
DOI: 10.5061/dryad.mp745/6
title: Scripts compressed

description: Includes ones bash script to run STACKS and trimmomatic and six R scripts to process the info from STACKS and calculate age of the genets