cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7914920.v1
title: gVCF_HG03705

description: 1000 Genomes gVCF mapped to hs37d5 for HG03705. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/rw3zkkpd9s
title: Extended Integrated laycan and berth allocation model with ship stability and conveyor routing constraints in bulk ports

description: This Excel file contains the data and optimized results from two case studies presented in the article "Extended Integrated Laycan and Berth Allocation Model with Ship Stability and Conveyor Routing Constraints in Bulk Ports." The first case study is based on computational experiments, while the second utilizes a dataset provided by the Jorf Lasfar port team.

Included in the file are detailed Gantt charts, which outline the berthing and loading schedules for each vessel. These schedules consider multiple operational constraints, such as:

Maintenance operations (both on berths and conveyor systems),
High tide requirements for vessel movements,
Nighttime loading restrictions for certain cargoes,
Multiple non-working calendars specific to vessel types and operations,
Vessel stability constraints during bulk loading,
Limitations on the number of vessels simultaneously crossing the channel...

The file also highlights key insights into the solutions obtained, with a focus on minimizing vessel dwell times and optimizing the use of port resources, ensuring efficient port management under these complex constraints.
DOI: 10.6084/m9.figshare.26018062.v1
title: raw dataset

description: Raw dataset of the MET trials
DOI: 10.6084/m9.figshare.7798202.v3
title: vak-test-data

description: Data used to test the vak library: <br>https://github.com/NickleDave/vak
DOI: 10.17632/gmjf2wjkz4
title: Homology donor sequences for organelle IP tagging

description: Multipart GenBank file (text format) containing annotated nucleotide sequence of all HDR homology donors used to generate the cell-wide collection of tagged organelle markers described in doi.org/10.1101/2023.12.18.572249. Can be opened with any DNA sequence viewer (e.g. Benchling).
DOI: 10.17632/tcmmj4t6f4
title: Hourly electricity load (Panama case study)

description: The data is available in hourly records from January 2015 until June 2020. The data composition is the following: 1. Historical electricity load, available on daily post-dispatch reports, from the grid operator (CND). 2. Historical weekly forecasts available on weekly pre-dispatch reports, both from CND. 3. Calendar information related to school periods, from Panama's Ministery of Education. 4. Calendar information related to holidays, from "When on Earth?" website. 5. Weather variables, such as temperature, relative humidity, precipitation, and wind speed, for three main cities in Panama, from Earthdata.
DOI: 10.6084/m9.figshare.12273188.v2
title: Molecular Models of SARS-CoV-2 Spike Protein Glycoforms

description: Here we have generated 3D structures of glycoforms of the spike (S) protein SARS-CoV-2, based on reported 3D structures for the S protein and on reported glycomics data for the protein produced in HEK293 cells. We also report structures for glycoforms that represent those present in the nascent glycoproteins (prior to enzymatic modifications in the Golgi and ER), as well as those that are commonly observed on antigens present in other viruses. These models were subjected to MD simulation to take into account protein and glycan plasticity, and to determine the extent to which glycan microheterogeneity impacts antigenicity. Lastly, we have identified peptides in the S protein that are likely to be presented in human leukocyte antigen (HLA) complexes, and discuss the role of S protein glycosylation in potentially modulating the adaptive immune response to the SARS-CoV-2 virus or to a related vaccine.
DOI: 10.6084/m9.figshare.27992417.v1
title: CMAB-The World's First National-Scale Multi-Attribute Building Dataset

description: Rapidly acquiring three-dimensional (3D) building data, including geometric attributes like rooftop, height and orientations, as well as indicative attributes like function, quality, and age, is essential for accurate urban analysis, simulations, and policy updates. Current building datasets suffer from incomplete coverage of building multi-attributes. This paper introduces a geospatial artificial intelligence (GeoAI) framework for large-scale building modeling, presenting the first national-scale Multi-Attribute Building dataset (CMAB), covering 3,667 spatial cities, 32million buildings, and 23.6billion m²of rooftops with an F1-Score of 89.93% in OCRNet-based extraction, totaling 368billion m³of building stock. We trained bootstrap aggregated XGBoost models with city administrative classifications, incorporating features such as morphology, location, and function. Using multi-source data, including billions of high-resolution Google Earth images and 60 million street view images (SVIs), we generated rooftop, height, structure, function, style, age, and quality attributes for each building with machine learning and large multimodal models. Accuracy was validated through model benchmarks, existing similar products, and manual SVI validation, mostly above 80%. Our dataset and results are crucial for global SDGs and urban planning.Reference format：Zhang, Y., Zhao, H., Long, Y. “CMAB-The World's First National-Scale Multi-Attribute Building Dataset”, 10.6084/m9.figshare.27992417.Data records: A building dataset with a total rooftop area of 23.6 billion square meters in 3,667 natural cities in China, including the attribute of building rooftop, height, structure, function, age, style, colour and quality, as well as the code files used to calculate these data. The deep learning models used are OCRNet, XGBoost, fine-tuned CLIP and Yolo-v8.Data storage: Due to the large size of the dataset, we provide two versions, one is before post-treatment, which is the original building data for slicing to extract the rooftops of the buildings, including various calculated features and predicted building multi-attributes (see https://doi.org/10.17632/b4t2wxhn2y/2<sup> </sup>for details (CMAB_origin.rar)). The other version is after post-treatment (the building has a complete rooftop and will not be divided by slices), which contains various attributes of buildings we derived (see 10.6084/m9.figshare.27992417 for details (CMAB_postprocess.rar)). In each province, there are shp files of all spatial cities belonging to the province, and the number in the middle is the spatial city number, and the spatial city numbers of all provinces range from 0 to 3666. After the shp file of each spatial city is opened, each line of records is a building instance.Contact: zhangyec23@mails.tsinghua.edu.cn ; Wechat:18013979786<br>
DOI: 10.6084/m9.figshare.3826446.v1
title: Biol2050 Lab07 IntroductoryLab.csv

description: Hypothesis: There is a correlation with the individuals height and shoe size, mainly due the balanced proportions of the human body. Predictions: The taller the height (ft) of the individual the bigger their shoe size (inches) will be. Methods: The data was conducted through a verbal survey. A total of 22 individuals were sampled and surveyed. All of the individuals were in the same room; Lumbers Building Lab room 117. Each individual was asked their height in feet and shoe size in inches. The data was then input into excel. <br> <br>
DOI: 10.17632/4vs6hrns6t
title: ARDL AND NARDL PAPER

description: This is dataset used for calculating ARDL and NARDL model
DOI: 10.6084/m9.figshare.20711617.v1
title: Supplementary Material for: Removal of Subfoveal Massive Hard Exudates through an Intentional Macular Hole in Patients with Diabetic Maculopathy: A Report of Three Cases

description: Recently, good postoperative visual acuity has been reported using surgical removal of hard exudates (HEs) through an intentional macular hole (iMH). We report 3 cases of subfoveal HE secondary to diabetic maculopathy (DM) treated with HE removal via an iMH. Pars plana vitrectomy (PPV) was performed in three eyes of 3 patients with subfoveal HE secondary to DM. In all eyes, after PPV, internal limiting membrane (ILM) peeling of the lower half was performed within the range of papilla diameter 2 centered on the fovea, leaving the upper half for subsequent inverted ILM flap technique. Then, by grabbing the inner layer of the fovea using ILM forceps, an iMH was created. The HE was then flushed from the iMH with a balanced salt solution as much as possible. Finally, the inverted ILM flap technique was performed using the upper half of the ILM that was left during the previous maneuver. At the end of the surgery, the eyes were flushed with 50 mL of 20% sulfur hexafluoride (SF6) after the fluid-air exchange of the vitreous cavity. After surgery, HE was adequately removed, iMH was completely closed, and visual acuity improved in all eyes. This surgical procedure did not cause a central scotoma but rather improved the central sensitivity of the visual field in all eyes. No serious surgery-related complications occurred. In conclusion, HE removal via an iMH hole can be one of the treatment options for patients with subfoveal HE secondary to DM.
DOI: 10.17632/9kpvymt83c
title: Investigating the mechanism of action of aggregation-inducing antimicrobial Pept-ins

description: Raw lipidomics data, the data set is related to figure 3G-3I.
DOI: 10.17632/zgr9bj57r4
title: snRNAseq- Neuroectodermal IL-12R signaling in neuroinflammation/EAE

description: We performed single-nucleus RNA sequencing (Chromium Next GEM Single Cell 3’ Reagent Kits v3.1 protocol, 10X Genomics) of FANS-isolated Hoechst+ nuclei from the cerebellum, brainstem and cervical spinal cord of NestinCre/+Il12rb2fl/fl mice and their Il12rb2fl/fl littermates at the onset of clinical EAE symptoms (10 dpi) . 
We performed two independent sequencing experiments and successfully sequenced 8 samples. The first experiment included two samples: Il12rb2fl, NestinCre_Il12rb2fl.  The second experiment included six samples: three Il12rb2fl mice and three NestinCre_Il12rb2fl mice. After quality control and doublet exclusion, snRNA-seq yielded a total of 133,151 single-nucleus transcriptomic profiles, among which 21,552 distinct genes were detected. Batches were integrated using SCVI. Unsupervised clustering of these data identified clusters that were assigned to diverse neuronal, glial and other cell types on the basis of known lineage marker genes. This allowed us to assess how the transcriptional profile of the neuroectoderm differed in the presence or absence of IL-12 receptor signaling by interrogating differentially expressed genes (DEGs). This revealed pronounced alterations particularly in excitatory neurons, granule cells, mature oligodendrocytes (MOLs) and myelin forming oligodendrocytes (MOLs1) suggesting a specific/concentrated action of IL-12 on these populations in the inflamed CNS. 
Our data suggest IL-12 to be critically involved in neuroprotection and shaping the trophic factor milieu within the inflamed CNS. Conversely, dysregulation or loss of trophic factor release by neurons in the absence of IL-12 may further propagate the degeneration of neurons, oligodendrocytes and possibly other cell types. 

Sequencing raw data and processed gene expression data will be deposited into the GEO repository upon publication. Code for analyses will be available upon contacting the corresponding authors: becher@immunology.uzh.ch and mundt@immunology.uzh.ch
DOI: 10.6084/m9.figshare.21221630.v1
title: Dataset

description: The dataset of "Untrained deep learning-based phase retrieval for fringe projection profilometry"
DOI: 10.6084/m9.figshare.24233167.v2
title: paingen_placebo_data.nii.gz_encrypted

description: Single trial contrast maps (event vs. baseline) of thermal and pressure pain delivered to the glabrous skin of the fingers under placebo and control cream treatment conditions. Participants are part of the University of Colorado Boulder twins dataset, and many participants are included as sibling pairs (~250 independent families).Analysis is identical to 12-contrast analysis described in https://doi.org/10.1101/2023.09.21.558825, Methods: Data analysis \ Participant-level analysis. Except instead of modeling events jointly each stimulus trial was modeled independently.
DOI: 10.6084/m9.figshare.27301686.v2
title: Photovoltaic dataset of China from 2013 to 2023 for ten years

description: The Photovoltaic Dataset of China from 2013 to 2023 for ten years is a comprehensive and high-quality resource. It encompasses the photovoltaic boundary datasets within the territorial scope of China over the decade-long period.<br>To produce this dataset, an advanced approach was employed. Firstly, machine learning techniques were utilized in conjunction with Landsat - 8 images with a resolution of 30m. These images underwent morphological restoration to enhance their quality. Subsequently, the processed data was converted into vector format, facilitating further analysis and manipulation. Finally, a crucial step of manual verification was carried out. This involved careful human checking to ensure the accuracy and reliability of the dataset. Through this meticulous process, a high-quality dataset was generated, which can serve as a valuable tool for various research and application scenarios related to photovoltaic studies in China, such as analyzing the spatial distribution and temporal changes of photovoltaic installations, assessing the impact of photovoltaic development on the environment and energy landscape, and supporting the planning and management of photovoltaic projects.
DOI: 10.6084/m9.figshare.3513752.v1
title: Appendix B. A table of regression parameters and upper and lower 95% confidence intervals for equations used in calculating rates of C and N accrual and time to reach 50% and 95% of remnant prairie levels.

description: A table of regression parameters and upper and lower 95% confidence intervals for equations used in calculating rates of C and N accrual and time to reach 50% and 95% of remnant prairie levels.
DOI: 10.6084/m9.figshare.12645758.v1
title: Supplementary Material for: Quality of Life during Treatment with Lenvatinib for Thyroid Cancer: The Patients’ Perspective beyond the Medical Evaluation

description: <b><i>Background:</i></b> Lenvatinib (LEN) has shown great efficacy but important toxicity in patients with advanced radioactive iodine-refractory (RAI-R) thyroid cancer (TC); a focused evaluation of its impact on patients’ quality of life (QoL) is still lacking. Our prospective study investigated the impact of this drug on QoL in a group of RAI-R TC patients treated at our centre. <b><i>Methods:</i></b> All patients filled in two questionnaires before and during treatment: (1) the Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events adapted questionnaire, assessing prevalence, severity, and/or interference on daily activities of the most frequent symptomatic adverse events (AEs) reported in previous clinical trials during therapy with LEN, and (2) the European Quality of Life 5 Dimensions 3 Levels (EQ-5D-3L) questionnaire, providing the EQ-5D index and the EQ visual analogue scale (EQ-VAS). Data from baseline questionnaires were compared with those obtained 3, 6, and 12 months after the start of treatment. <b><i>Results:</i></b> In our population (<i>n</i> = 20), an overall increased perception of symptomatic AEs emerged during treatment (statistically significant for abdominal pain, asthenia/fatigue, decreased appetite, and xerostomia). The median EQ-5D index and EQ-VAS scores after 3 months of treatment were lower than at baseline, almost returning to initial values after 12 months. <b><i>Conclusion:</i></b> RAI-R TC patients reported a general increase in prevalence and interference on daily activities of symptomatic AEs during therapy with LEN. Self-perceived QoL initially decreased during therapy. However, our data suggest that QoL could be restored after 12 months; this trend might partly reflect the impact of therapy optimisation.
DOI: 10.6084/m9.figshare.13571084.v2
title: Voter Fraud 2020

description: VoterFraud2020 is a multi-modal Twitter dataset with 7.6M tweets and 25.6M retweets related to voter fraud claims.<br>See the Github repository for a detailed data description.
DOI: 10.6084/m9.figshare.16902766.v1
title: Supplementary Material for: Exome-Wide Pan-Cancer Analysis of Germline Variants in 8,719 Individuals Finds Little Evidence of Rare Variant Associations

description: <b><i>Background:</i></b> Many cancer types show considerable heritability, and extensive research has been done to identify germline susceptibility variants. Linkage studies have discovered many rare high-risk variants, and genome-wide association studies (GWAS) have discovered many common low-risk variants. However, it is believed that a considerable proportion of the heritability of cancer remains unexplained by known susceptibility variants. The “rare variant hypothesis” proposes that much of the missing heritability lies in rare variants that cannot reliably be detected by linkage analysis or GWAS. Until recently, high sequencing costs have precluded extensive surveys of rare variants, but technological advances have now made it possible to analyze rare variants on a much greater scale. <b><i>Objectives:</i></b> In this study, we investigated associations between rare variants and 14 cancer types. <b><i>Methods:</i></b> We ran association tests using whole-exome sequencing data from The Cancer Genome Atlas (TCGA) and validated the findings using data from the Pan-Cancer Analysis of Whole Genomes Consortium (PCAWG). <b><i>Results:</i></b> We identified four significant associations in TCGA, only one of which was replicated in PCAWG (BRCA1 and ovarian cancer). <b><i>Conclusions:</i></b> Our results provide little evidence in favor of the rare variant hypothesis. Much larger sample sizes may be needed to detect undiscovered rare cancer variants.
DOI: 10.6084/m9.figshare.27087271.v1
title: 补充图 1.tif

description: 物 实验引<br>
DOI: 10.6084/m9.figshare.4635310.v2
title: Data: Age- and environment-dependent changes in chemical defences of larval and post-metamorphic toads

description: We used high-performance liquid chromatography with diode-array detection and mass spectrometry (HPLC-DAD-MS) to identify and quantify bufadienolide compounds. We homogenized specimens of the common toad <i>(Bufo bufo)</i> using a VWR VDI 12 homogenizer with an IKA S12N-7S dispersing tool. After drying samples <i>in vacuo</i> at 45 °C using a Büchi Rotavapor R-134 rotary evaporator, we measured dry weight of samples using an Ohaus Pioneer PA-114 analytical balance to the nearest 0.1 mg and subsequently re-dissolved samples in 1 ml HPLC-grade absolute methanol, which was further aided by exposing the samples briefly to ultrasound in a Tesla UC005AJ1 bath sonicator. We filtered the samples using FilterBio nylon syringe filters (pore size = 0.22 μm). We identified compounds as bufadienolides by inspecting the UV spectrum of peaks (Hagman et al. 2009, Hayes et al. 2009, Bókony et al. 2016) and by using commercially acquired bufalin, bufotalin, resibufogenin, gamabufotalin, areno- and telocinobufagin (Biopurify Phytochemicals, Chengdu, China), cinobufagin (Chembest, Shanghai, China), cinobufotalin (Quality Phytochemicals, New Jersey, USA) and digitoxigenin (Santa Cruz Biotechnology, Dallas, TX, USA) as standards. Identification of compounds present in low quantities was further aided by the analysis of a sample obtained from an adult male common toad by gently massaging the parotoid glands. <br>A single-quadrupole HPLC-MS system (Model: LC-MS-2020, Shimadzu, Kyoto, Japan) equipped with a binary gradient solvent pump, a vacuum degasser, a thermostated autosampler, a column oven, a diode array detector and a mass analyser with electrospray ionization (ESI-MS) was used. Chromatographic separations were carried out at 35 °C on a Kinetex C18 2.6 µm column (100 mm x 3 mm i.d.) in series with a C18 guard column (4 mm × 3 mm i.d.) using 10 µL injections. The mobile phase consisted of water containing 0.05% formic acid (solvent A) and acetonitrile containing 0.05% formic acid (solvent B). The flow rate was 0.8 mL/min and the gradient was as follows: 0-2 min, 15-25% B; 2-15 min, 25-35% B; 15-24 min, 30-50% B; 24-25 min, 50-90% B; 25-30 min 90% B; 30-35 min 15% B. ESI worked under the following conditions: desolvation line (DL) temperature, 250 °C; heat block temperature, 400 °C; drying N2 gas flow, 15 L/min; nebulizer N2 gas flow, 1.5 L/min; positive ionization mode. Data was acquired and processed using the programme LabSolutions 5.42v (Shimadzu, Kyoto, Japan).
DOI: 10.17632/n5z7mshhg6
title: Global Inequalities in the Burden of Melanoma

description: Cover letter and supplemental tables and figures for "Global Inequalities in the Burden of Melanoma From 1990 to 2021: Findings From the Global Burden of Disease Study 2021"
DOI: 10.17632/p26vr5tjt4
title: Small proteins modulate ion channel-like ACD6 to regulate immunity in Arabidopsis thaliana

description: The ankyrin-repeat transmembrane protein ACD6 was identified two decades ago, but its exact biochemical function has remained enigmatic. Chen et al. show that ACD6 is a bona fide regulator of calcium influx using heterologous systems and calcium reporters in plants, and that this activity can be further enhanced by a MHA1L peptide ligand.
DOI: 10.6084/m9.figshare.7725272.v1
title: Gene annotation of S. suberectus genome

description: Gene annotation of S. suberectus genome combine with denovo, homolog and RNA-seq three methods
DOI: 10.17632/7gbkxgngpm
title: CartoCell, a high-content pipeline for accurate 3D image analysis, unveils cell morphology patterns in epithelial cysts.

description: CartoCell is a deep learning-based image processing pipeline for the high-content segmentation of whole epithelial cysts acquired at low resolution with minimal human intervention. This pipeline enables high-precision cell segmentation that allows a single cell cartography study of major interest for the search of cellular patterns.

All the pipeline code, feature extraction, and the various single-cell cartography analysis tools are linked below.

The image dataset used can be found in this repository.

All directories mentioned in "steps to reproduce" refer to the release from ComplexOrganizationOfLivingMatter repository named:
Andrés San-Román et al.  NaturalVariation-CartoCell_SingleCellCartographyTools_1.0.0CartoCell
https://github.com/ComplexOrganizationOfLivingMatter/NaturalVariation/releases/tag/CartoCell_SingleCellCartographyTools_1.0.0
DOI: 10.6084/m9.figshare.28119683.v1
title: IEEE123DataSD

description: This is the data for IEEE 123-bus test system.
DOI: 10.6084/m9.figshare.7883222.v1
title: gVCF_HG00607

description: 1000 Genomes gVCF mapped to hs37d5 for HG00607. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/tth9vyvyvc
title: Data for: Thermal preferences of subtropical Aedes aegypti and temperate Ae. japonicus mosquitoes
DOI: 10.17632/vzfkj8d86c
title: Material Suplementar - Pesquisa sobre o governo digital brasileiro - 2024

description: Material suplementar da pesquisa sobre o governo digital brasileiro realizada em 2024. 
Quadro analítico com as legislações e normativas sobre interoperabilidade e compartilhamento de dados no Brasil, analisadas entre janeiro e março de 2024.
DOI: 10.6084/m9.figshare.3517643.v1
title: Appendix A. Results on mean and 95% confidence interval of regression coefficients for environmental and host abundance variables in relation to tick and chigger loads on Apodemus agrarius.

description: Results on mean and 95% confidence interval of regression coefficients for environmental and host abundance variables in relation to tick and chigger loads on Apodemus agrarius.