cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28030838
title: Additional datasets for the effects of nitrogen deposition and biochar application on soil methane uptakes in a subtropical forest

description: We undertook a three-year field trial in a subtropical forest to investigate the impacts of N deposition and biochar application (individually and in combination) on soil methane uptakes. Our objective was to unravel the physicochemical and microbial mechanisms by which biochar mitigates the suppressive effects of nitrogen deposition on soil methane uptakes.
DOI: 10.6084/m9.figshare.c.3821695_d14
title: Additional file 2: Table S2. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response

description: Identification of PF00171, PS00687 and PS00070 domains in soybean ALDHs using HMMER 3.0 software. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3821695_d1.v1
title: Additional file 10: Table S5. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response

description: Detailed information of putative co-functional genes of GmALDHs. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3821695_d1
title: Additional file 10: Table S5. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response

description: Detailed information of putative co-functional genes of GmALDHs. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3820477_d1.v1
title: Additional file 1: Table S1. of Evaluation of the informatician perspective: determining types of research papers preferred by clinicians

description: Country of residence distributions of the clinicians. Table S2. Publication type distributions of the articles read by the clinicians. Table S3. Times of the journals read by the clinicians in each medical specialty group. Table S4. List of major MeSH terms having significant different frequencies between clinicians’ reading libraries and a random sample Table S5. List of minor MeSH terms having significant different frequencies between clinicians’ reading libraries and a random sample. (XLS 313 kb)
DOI: 10.6084/m9.figshare.c.3820459_d5.v1
title: Additional file 5: Table S5. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: Gene families that were found to be different among the SDs regions from the five studied genomes. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3820459_d5
title: Additional file 5: Table S5. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: Gene families that were found to be different among the SDs regions from the five studied genomes. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3820477_d1
title: Additional file 1: Table S1. of Evaluation of the informatician perspective: determining types of research papers preferred by clinicians

description: Country of residence distributions of the clinicians. Table S2. Publication type distributions of the articles read by the clinicians. Table S3. Times of the journals read by the clinicians in each medical specialty group. Table S4. List of major MeSH terms having significant different frequencies between clinicians’ reading libraries and a random sample Table S5. List of minor MeSH terms having significant different frequencies between clinicians’ reading libraries and a random sample. (XLS 313 kb)
DOI: 10.6084/m9.figshare.c.3820459_d3
title: Additional file 3: Table S3. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: Gene duplicates located in the SD intervals. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3820459_d3.v1
title: Additional file 3: Table S3. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: Gene duplicates located in the SD intervals. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3820459_d2.v1
title: Additional file 2: Table S2. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: Genes embedded in the SDs regions. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3820459_d1.v1
title: Additional file 1: Table S1. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: SDs in the five studied genomes. (XLSX 1727Â kb)
DOI: 10.6084/m9.figshare.c.3820459_d2
title: Additional file 2: Table S2. of Segmental duplications: evolution and impact among the current Lepidoptera genomes

description: Genes embedded in the SDs regions. (XLSX 81Â kb)
DOI: 10.15468/dl.myqq5m
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sepioteuthis lessoniana d'Orbigny, 1826",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 113 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035431-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3820330_d9.v1
title: Additional file 5: of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

description: Blastn result showing the ortholog of WOX10 in G. arboreum located on Chr02. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3820330_d9
title: Additional file 5: of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

description: Blastn result showing the ortholog of WOX10 in G. arboreum located on Chr02. (TXT 6 kb)
DOI: 10.6084/m9.figshare.c.3820330_d5
title: Additional file 1: Table S1. of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

description: Information on the gene exons used in this study. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3820330_d5.v1
title: Additional file 1: Table S1. of Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses

description: Information on the gene exons used in this study. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3820321_d7.v1
title: Additional file 7 of Uncovering missing pieces: duplication and deletion history of arrestins in deuterostomes

description: Alignment of deuterostome arrestins with functional annotation known from experimental studies of arrestins in mammals. Note that the naming differs from the naming used throughout the manuscript with ARR1, ARR2, ARR3 and ARR4 used instead of SAG, ARRB1, ARRB2 and ARR3, respectively. Please load alignment with annotation file (provided at http://dx.doi.org/10.5281/zenodo.820866 ) in Jalview alignment viewer. (FA 44.5 kb)
DOI: 10.6084/m9.figshare.c.3820324_d2
title: Additional file 2: Table S2. of VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

description: NCBI accession numbers for prokaryotic host and viral genomes used in the training and evaluation of VirFinder.Â (XLSX 2752Â kb)
DOI: 10.6084/m9.figshare.c.3820324_d2.v1
title: Additional file 2: Table S2. of VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

description: NCBI accession numbers for prokaryotic host and viral genomes used in the training and evaluation of VirFinder.Â (XLSX 2752Â kb)
DOI: 10.6084/m9.figshare.c.3820327_d2.v1
title: Additional file 2 of TnseqDiff: identification of conditionally essential genes in transposon sequencing studies

description: Analysis results from ESSENTIALS and TnseqDiff for the S. marcescens study. (XLSX 1040 kb)
DOI: 10.6084/m9.figshare.c.3820327_d2
title: Additional file 2 of TnseqDiff: identification of conditionally essential genes in transposon sequencing studies

description: Analysis results from ESSENTIALS and TnseqDiff for the S. marcescens study. (XLSX 1040 kb)
DOI: 10.6084/m9.figshare.c.3819364_d7
title: Additional file 7: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq

description: Translational efficiency changes under Methionine Restriction and the codon frequency of Lysine(K), Glutamine(Q), Glutamic acid(E) and Methionine(M). This file shows the translational efficiency change for each gene and its codon frequency of Lysine(K), Glutamine(Q), Glutamic acid(E) and Methionine(M). In addition, the length of the gene and the 3â ˛UTR and 5â ˛UTR length are also listed. (XLSX 599 kb)
DOI: 10.6084/m9.figshare.c.3819364_d7.v1
title: Additional file 7: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq

description: Translational efficiency changes under Methionine Restriction and the codon frequency of Lysine(K), Glutamine(Q), Glutamic acid(E) and Methionine(M). This file shows the translational efficiency change for each gene and its codon frequency of Lysine(K), Glutamine(Q), Glutamic acid(E) and Methionine(M). In addition, the length of the gene and the 3â ˛UTR and 5â ˛UTR length are also listed. (XLSX 599 kb)
DOI: 10.6084/m9.figshare.c.3819364_d6.v1
title: Additional file 6: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq

description: Module scores and KEGG pathway scores under Methionine Restriction and amino acids starvation. There are two spread sheets: 1. Module_scores: Transcription factor module scores and corresponding p-values from the fold change data under Methionine Restriction or amino acids starvation. 2. KEGG pathway_scores: KEGG pathway scores and corresponding p-values from the fold change data under Methionine Restriction or amino acids starvation. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3819364_d6
title: Additional file 6: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq

description: Module scores and KEGG pathway scores under Methionine Restriction and amino acids starvation. There are two spread sheets: 1. Module_scores: Transcription factor module scores and corresponding p-values from the fold change data under Methionine Restriction or amino acids starvation. 2. KEGG pathway_scores: KEGG pathway scores and corresponding p-values from the fold change data under Methionine Restriction or amino acids starvation. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3819364_d4
title: Additional file 4: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq

description: Gene ontology enrichment analysis of the genes with high footprint changes or translational efficiency changes. There are 4 spread sheets in this file: 1. MetR footprint UP 4 fold: Enriched GO biological process categories in the genes up-regulated under methionine restriction by more than four-fold in footprint level. 2. MetR footprint Down 4 fold: Enriched GO biological process categories in the genes down-regulated under methionine restriction by more than four-fold in footprint level. 3. MetR efficiency UP 2 fold: Enriched GO biological process categories in the genes with increased translational efficiency by at least two-fold. 4. MetR efficiency Down 2 fold: Enriched GO biological process categories in the genes with decreased translational efficiency by at least two-fold. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3819364_d4.v1
title: Additional file 4: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq

description: Gene ontology enrichment analysis of the genes with high footprint changes or translational efficiency changes. There are 4 spread sheets in this file: 1. MetR footprint UP 4 fold: Enriched GO biological process categories in the genes up-regulated under methionine restriction by more than four-fold in footprint level. 2. MetR footprint Down 4 fold: Enriched GO biological process categories in the genes down-regulated under methionine restriction by more than four-fold in footprint level. 3. MetR efficiency UP 2 fold: Enriched GO biological process categories in the genes with increased translational efficiency by at least two-fold. 4. MetR efficiency Down 2 fold: Enriched GO biological process categories in the genes with decreased translational efficiency by at least two-fold. (XLSX 20 kb)
DOI: 10.15468/dl.aru7pv
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Decapterus akaadsi Abe, 1958",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035432-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3818044_d2
title: Additional file 2: Table S2. of Genetic diversity of Plasmodium falciparum populations in southeast and western Myanmar

description: Allele sizes and types of Msp1, Msp2 and Glurp genes. (XLS 83 kb)
DOI: 10.6084/m9.figshare.c.3818044_d1.v1
title: Additional file 1: Table S1. of Genetic diversity of Plasmodium falciparum populations in southeast and western Myanmar

description: TheÂ information of all samples. (XLS 376Â kb)
DOI: 10.6084/m9.figshare.c.3818044_d1
title: Additional file 1: Table S1. of Genetic diversity of Plasmodium falciparum populations in southeast and western Myanmar

description: TheÂ information of all samples. (XLS 376Â kb)
DOI: 10.15468/dl.gg9532
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Puffinus carneipes Gould, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 605 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035435-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3817693_d8
title: Additional file 8: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: Primer sequences used for SNPs validation between ‘NAU-YH’, ‘NAU-LB’ and ‘NAU-RG’ by Sanger sequencing. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3817693_d8.v1
title: Additional file 8: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: Primer sequences used for SNPs validation between ‘NAU-YH’, ‘NAU-LB’ and ‘NAU-RG’ by Sanger sequencing. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3817693_d7.v1
title: Additional file 7: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: The detailed information of putative SSR markers identified in radish. (XLSX 2112 kb)
DOI: 10.6084/m9.figshare.c.3817693_d7
title: Additional file 7: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: The detailed information of putative SSR markers identified in radish. (XLSX 2112 kb)
DOI: 10.6084/m9.figshare.c.3817693_d6.v1
title: Additional file 6: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: Putative insertion/deletion (InDel) in the genotypes ‘NAU-YH’, ‘NAU-LB’ and ‘NAU-RG’. (XLSX 517 kb)
DOI: 10.6084/m9.figshare.c.3817693_d6
title: Additional file 6: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: Putative insertion/deletion (InDel) in the genotypes ‘NAU-YH’, ‘NAU-LB’ and ‘NAU-RG’. (XLSX 517 kb)
DOI: 10.15468/dl.k6d7ax
title: Occurrence Download

description: A dataset containing 113102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anairetes parulus (Kittlitz, 1830)"
 ]
}

 The dataset includes 113102 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035429-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3817693_d2.v1
title: Additional file 2: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: The information of detected alternative splicing (AS) events in radish. (XLSX 5752 kb)
DOI: 10.6084/m9.figshare.c.3817693_d2
title: Additional file 2: of Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.)

description: The information of detected alternative splicing (AS) events in radish. (XLSX 5752 kb)
DOI: 10.6084/m9.figshare.c.3817651_d3.v1
title: Additional file 3: of Abnormal circadian oscillation of hippocampal MAPK activity and power spectrums in NF1 mutant mice

description: Supplementary tables were shown as the spike firing rates of pyramidal cells in mice. (ZIP 106Â kb)
DOI: 10.6084/m9.figshare.c.3817651_d3
title: Additional file 3: of Abnormal circadian oscillation of hippocampal MAPK activity and power spectrums in NF1 mutant mice

description: Supplementary tables were shown as the spike firing rates of pyramidal cells in mice. (ZIP 106Â kb)
DOI: 10.15468/dl.jt66gg
title: Occurrence Download

description: A dataset containing 603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ardenna carneipes (Gould, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 603 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035436-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3816343_d4.v1
title: MOESM3 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

description: Additional file 3. The reactions and metabolites of iCW773.
DOI: 10.6084/m9.figshare.c.3816343_d4
title: MOESM3 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

description: Additional file 3. The reactions and metabolites of iCW773.
DOI: 10.6084/m9.figshare.c.3816343_d3.v1
title: MOESM2 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

description: Additional file 2. The lumped reactions of ModelCg 2.
DOI: 10.6084/m9.figshare.c.3816343_d3
title: MOESM2 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

description: Additional file 2. The lumped reactions of ModelCg 2.
DOI: 10.6084/m9.figshare.c.3816343_d1.v1
title: MOESM10 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

description: Additional file 10. The upper and lower bounds of the 13C-tracer experimental fluxes used by OptForceMUST and the added reactions used in this study.
DOI: 10.6084/m9.figshare.c.3816343_d1
title: MOESM10 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

description: Additional file 10. The upper and lower bounds of the 13C-tracer experimental fluxes used by OptForceMUST and the added reactions used in this study.
DOI: 10.6084/m9.figshare.c.3815593_d2
title: Additional file 2: Dataset S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

description: RNA-seq assembly results and expression analysis from various tissues. (XLSX 38411Â kb)
DOI: 10.6084/m9.figshare.c.3815593_d2.v1
title: Additional file 2: Dataset S1. of Integrated transcriptomics and metabolomics analysis to characterize cold stress responses in Nicotiana tabacum

description: RNA-seq assembly results and expression analysis from various tissues. (XLSX 38411Â kb)
DOI: 10.15468/dl.7qqvkh
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Branchiostegus japonicus (Houttuyn, 1782)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 221 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035437-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3814021_d7
title: Additional file 5: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for SRR388228. (XLS 384Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d6.v1
title: Additional file 4: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for SRR388227. (XLS 362Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d6
title: Additional file 4: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for SRR388227. (XLS 362Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d5
title: Additional file 3: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for SRR388226. (XLS 365Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d5.v1
title: Additional file 3: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for SRR388226. (XLS 365Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d4
title: Additional file 2: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for PVAAS test data. (XLS 17Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d4.v1
title: Additional file 2: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: ISVASE result for PVAAS test data. (XLS 17Â kb)
DOI: 10.6084/m9.figshare.c.3814021_d3.v1
title: Additional file 1: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: PVAAS result for its test data. (XLS 753 bytes)
DOI: 10.6084/m9.figshare.c.3814021_d3
title: Additional file 1: of ISVASE: identification of sequence variant associated with splicing event using RNA-seq data

description: PVAAS result for its test data. (XLS 753 bytes)
DOI: 10.6084/m9.figshare.c.3814018_d4
title: MOESM4 of Deep-learning: investigating deep neural networks hyper-parameters and comparison of performance to shallow methods for modeling bioactivity data

description: Additional file 4. Results of parameter selection.
DOI: 10.6084/m9.figshare.c.3812704_d3.v1
title: Additional file 3: Table S3. of The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes

description: Skewness and AÂ +Â T content (%) of the protein-coding genes (PCGs), tRNAs, rRNA genes, each codon position of PCGs and non-coding region of the mitochondrial genome of the cestodes Atractolytocestus huronensis, Khawia sinensis, Breviscolex orientalis and Schyzocotyle acheilognathi (CN). (XLSX 16Â kb)