cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7371191.v1
title: Diverse genotypes of the amphibian killing fungus produce distinct phenotypes through plastic responses to temperature

description: Dataset consists of two raw data files, four generated files during analyses, a phylogenetic tree file and two R files (one raw code, one markdown):<br>Raw data files<br>1) Size data. Zoospore and zoosporangium size measurements titled “BdSizeMeasurements.csv”. This file consists of all size measurements taken for each Bd genotype. The area of the measurement was used in linear mixed-effects models to analyze the effect of temperature, genotype and their interaction on size. <br>2) Growth data. Plate read measurements for growth rate titled "GR_data.csv". This file consists of all OD readings for every well for every day that readings were taken. We used R code to correct baseline zoospore OD, remove wells with potential contamination, fit logistic growth models, and then extracted parameter estimates to use in linear mixed-effects models.<br>Four files generated from the raw data files in the R code to test for phylogenetic signal. I chose to make files in excel as opposed to just writing code to create R data frames.<br>1) Linear mixed-effects model estimates titled “parameters_size_gr.csv”. These are the mean model estimates from the linear mixed-effects models conducted on size and growth data. <br>2) Relative distance plasticity index (RDPI) for each trait titled “rdpi_size_gr.csv”. We calculated RDPI (Valladares et al., 2006) for each trait using the function rdpi in the package ‘Plasticity’ (Ameztegui, 2017. <br>3 and 4) A second way to visualize the mean model estimates from the linear mixed effects models. These files were created to generate figures 5 and 6 in the publication.<br>Phylogenetic tree is titled “carly_strains.tre” and is a tree constructed using the neighbor-joining algorithm in PAUP*4.0 based on concatenated multilocus genotypes for 36 loci from multiple chromosomal regions (Schloegel et al., 2012, Jenkinson et al., 2016).<br>R file is titled “PhenoProject_final_submit.Rmd” and the knitted .Rmd file (with all of the code and output run) is titled “PhenoProject_final_submit.html”<br>
DOI: 10.6084/m9.figshare.19209429.v1
title: Certificates and Witnesses for Probabilistic Model Checking -- Examples

description: This repository includes a jupyter notebook in which many of the examples from the thesis "Certificates and Witnesses for Probabilistic Model Checking" are made executable using the tool SWITSS.
DOI: 10.6084/m9.figshare.20013371.v1
title: Paeonia suffruticosa petals full-length isoforms

description: The full-length isoforms of non-blotch and blotch petals in Paeonia suffruticosa performed on the PacBio Sequel Platform in order to study the underlying molecular mechanism of petal botch formation.
DOI: 10.6084/m9.figshare.22221235.v1
title: Research data supporting 'Impact of bare fallow management on soil carbon storage and aggregates across a rock gradient'

description: The peer-reviewed paper can be found at https://doi.org/10.1002/jpln.202300156
DOI: 10.6084/m9.figshare.25244434.v2
title: <b>Survey Response of Respondent from Freelancer in oil and gas industry </b>

description: Research exploring the relationship between work motivation, transformative leadership, absorptive capacity, and innovative behavior reveals important findings that highlight how work motivation and inspirational leadership can enhance the ability of organizations and individuals to absorb and utilize new knowledge, which in turn promotes innovative behavior
DOI: 10.6084/m9.figshare.25886119.v1
title: Germline missense MLH1 Pathogenic variants

description: Molecular dynamics simulation of the pathogenic variants based on the ClinVar database, the simulation is up to 100 ns.
DOI: 10.6084/m9.figshare.3519374.v1
title: Appendix A. Texts summarizing the quality control and quality assurance (QA/QC) procedures and the method of estimating atmospheric Hg deposition.

description: Texts summarizing the quality control and quality assurance (QA/QC) procedures and the method of estimating atmospheric Hg deposition.
DOI: 10.6084/m9.figshare.853788.v1
title: Ness Dissertation Oral Defense Presentation

description: Lawrence (Lonny) R. Ness Dissertation Oral Defense Presentation
DOI: 10.17632/c3pvc272df
title: Raw data on the morphometric measurements of Malaysian Mahseer (Tor tambroides) in captivity

description: Raw data on the morphometric measurements of 27 adult male and 27 female Malaysian Mahseer (Tor tambroides) reared in captivity. Data was measured using digital image analysis. Data is used to study the sexual dimorphism in this species.
DOI: 10.6084/m9.figshare.26408644.v2
title: spontaneous urban plants sampling data

description: Sampling data of urbanization intensity, habitat permeability, vegetation cover, herbivory and plant traits (life form, dispersal symdrome, leaf area, specific leaf area and height) used for analyzes made in the work "Habitat permeability drives community metrics, functional traits, and herbivory in neotropical spontaneous urban flora".
DOI: 10.6084/m9.figshare.26583709.v3
title: Quotes.xlsx

description: Representative quotes from Pokemon games.
DOI: 10.17608/k6.auckland.5483644.v1
title: BFI 10 Amos Analysis Files

description: These files are AMOS v24 input files used to analyse the BFI10 inventory items.
DOI: 10.17632/nvmsbtpn2h
title: Ontology-style relation annotation datasets: Japanese traffic rules of the road and SemEval-2010 Task 8

description: Each dataset is in two different formats: (1) Conventional annotation (Normal-RoR stands for the Japanese traffic Rules of the Road) and (2) Ontology-Style Relation (OSR) annotation (OSR-RoR stands for Normal-RoR in OSR format, and OSR-SemEval stands for SemEval-2010 Task 8 in OSR format). 
--Normal-RoR: Japanese traffic Rules of the Road dataset that are in conventional annotating format using direct links to maintain relationships between entities. 

----Normal-RoR_all.json: Contain the whole dataset.
----Folders (1, 2, 3, 4, 5): Contain the five-crossed validating data created from the Normal-RoR.json:
------train.json: Training dataset
------dev.json: Validating dataset
------test.json: Testing dataset

----OSR-RoR: Japanese traffic Rules of the Road dataset that are in Ontology-Style Relation (OSR) annotating format using relation mentions and some RDF standard properties to maintain relationships between entities. 
----OSR-RoR_all.json: Contain the whole dataset.
----Folders (1, 2, 3, 4, 5): Contain the five-crossed validating data created from the OSR-RoR.json:
------train.json: Training dataset
------dev.json: Validating dataset
------test.json: Testing dataset

----OSR-SemEval.json: SemEval-2010 Task 8 dataset that are in Ontology-Style Relation (OSR) annotating format using relation mentions and some RDF standard properties to maintain relationships between entities. 

The differences between the conventional annotation and the OSR are: (1) In the conventional annotation, a direct link is used to maintain relationship between two entities, and (2) In OSR, a relation mention, which is a word or phrase that can represent relationships, is used to maintain relationship between two entities by using “domain” and “range” connecting from the relation mention to the two entity mentions.
DOI: 10.6084/m9.figshare.21206288.v1
title: Darknet_memes

description: A dataset consisitng of memes (a group of digital items, images), analyzed using social semiotic content analysis.
  
The research is published in the paper "<strong>Darknet Imaginaries in Internet Memes: The Discursive Malleability of the Cultural Status of Digital Technologies"</strong> published in <strong>Journal of Computer-Mediated Communication</strong>.
<br>
<strong>Abstract:</strong>
Dominant discourses on the darknet present it either as a dangerous space with flourishing crime or a place for civic action and political activism. However, these depictions have been challenged in online popular culture, particularly in memes. By utilizing the concepts of double articulation of media and cultural imaginaries, this article reveals how memes shape popular definitions of darknet. Our qualitative, social semiotic content analysis of 505 memes reveals an ambiguous and complex vision of the darknet that both supports and demystifies the mainstream imagery. We introduce the concept of <em>discursive malleability of niche technologies</em>, to describe how cultural practices reshape technologies, especially those with small userbases. Additionally, we present a ‘representational map of the darknet’ and indicate how this contributes to social understanding of digital technologies more generally, and, not least, why the analyzed memes may be read as lens exposing contradictory notions and policies regarding digital technologies nowadays.
DOI: 10.6084/m9.figshare.22999841.v1
title: Data

description: Offshore carbon emission by country; CEPII-Geographical distance between the two countries; Container throughput data; Adjacency matrix of network.
DOI: 10.6084/m9.figshare.27079687.v1
title: Towards LLM-generated explanations for component-based knowledge graph question answering systems

description: raw results of experiment
DOI: 10.17632/z7v9ws4338
title: Inputs and results for "Establishing best practices for modeling multi-day energy storage in deeply decarbonized energy systems" (revised paper)

description: Inputs and results for the forthcoming paper "Establishing best practices for modeling multi-day energy storage in deeply decarbonized energy systems". This is a dataset for the revised version of the paper following peer review; the dataset for the originally submitted paper is available at 10.17632/nkz3mgr9kp.1. The folders started with "results_" contain the input data for the GenX cases run, for each zonal aggregation. GenX is an open source model available at https://github.com/GenXProject/GenX.jl . The file "results.csv" contains the raw data used to make the plots in the paper.
DOI: 10.6084/m9.figshare.14547354.v1
title: Gene duplications and genomic conflict underlie major pulses of phenotypic evolution in gymnosperms

description: Data deposit for Stull et al. 2021. Gene duplications and genomic conflict underlie major pulses of phenotypic evolution in gymnosperms.<br><b></b>
DOI: 10.6084/m9.figshare.25100360.v4
title: Data and codes for the paper Drought Propagation and Recovery Behaviours Across 407 Australian Catchments

description: This research investigates the characteristics of drought propagation and recovery time lags for droughts of four timescales and a combination of drought onset and cessation criteria in 407 unregulated catchments within six major precipitation zones across Australia. This helps understand the linkages between meteorological, hydrological and agricultural droughts which is crucial to building resilience and planning for future climate changes.The following files contain catchment properties and R scripts for lag calculation and generating the figures. It also contains generated data files in .csv format.Uploaded files:Catchments_407_Properties.csv -- List of catchments used in the research and their attributes SPI_##m_sorted.csv - Calculated SPI values of ##-month timescaleSSI_##m_sorted.csv - Calculated SSI values of ##-month timescaleSSMI_##m_sorted.csv - Calculated SSMI values of ##-month timescale<br>
DOI: 10.6084/m9.figshare.26210945.v1
title: ERA5 daily Soil moisture

description: ERA5 daily datasets
DOI: 10.6084/m9.figshare.28378514.v1
title: <b>Framing the European Green Deal: Political and media energy discourses in Czechia and Sweden</b>

description: The European Green Deal (EGD) has become a key reform process in the European Union with a major impact on energy reforms in the Member States (MS). At the national level, the discourse around EGD and the Fit for 55 package plays a crucial role in shaping perceptions and potentially influencing behaviour. While scholars have examined particularly the EU discourse on the EGD, this paper focuses on Czechia and Sweden, two MS with contrasting attitudes towards renewable energy deployment and climate protection. Using the methodological framework of the Discourse-Historical Approach, the comparative analysis examines how EGD is framed within political and media discourses in these countries during the first phase of reform implementation (2019-2022). The main findings suggest that despite contextual differences, EGD appears to be universally accepted and shows resilience even in the midst of external and internal changes. Notably, although the argumentative strategies differ, the overarching acceptance of EGD remains consistent.
DOI: 10.17632/jrtjw734r3
title: Dataset: Decoding social decisions from movement kinematics

description: The following dataset contains kinematic data of the Ultimatum Game (UG) task. All info about columns are available in the sheet named "CulumnInfo".

Brief description of the task: Participants played as responders in two experimental sessions of a motor version of the UG. They were told that they would play  the game in real-time with another person connected via a computer interface. The offer could be 1, 2, 3, 4, or 5 out of €10. 

Brief description of the procedure: Each trial started with a green fixation cross for 1 s presented at the center of the screen, followed by a silhouette of the proposer's face with the message ‘[Name of proposer] is thinking...’ (e.g., ‘Laura is thinking...’). This screen could last 2, 3, 4, or 5 s. The offer then appeared (e.g., ‘Laura’s offer is €4’), remaining visible for 3 s. Participants were instructed to make their choice within this time window by reaching out, grasping, and moving one of two cylinders placed in front of them at a comfortable reaching distance (44 cm from the table edge to object), 18 cm to the left and right from body midline.  The cylinders were labeled ‘accept’ and ‘reject'. The ‘accept’ and ‘reject’ labels assigned to cylinders were counterbalanced across sessions.
DOI: 10.6084/m9.figshare.11342720.v1
title: The utility of Covariance Assumption Test – ANOVA approach and relative error of Cell Number Estimation by simulation

description: Numeric processing on analysis and diagnostic dataset of relationship between spectrum light and cell particles of <i>S cerevisiae</i> was performed to analyze the covariance on regression assumption and relative error of cell number estimation to a model. The one model should be chosen and the relationship of that i.e. the model for standard curve on turbidimetry. Under Windows 10 OS the application with using DosBox 0.74 were used for Biology system. This document consists of utility of covariance assumption test, simulation, and the computation proof by Excel in Windows OS.
DOI: 10.6084/m9.figshare.23585301.v2
title: <b>An urban cellular automata model based on a spatiotemporal non-stationary neighborhood</b>

description: This project is intended to publicly disclose the data and code of this study after the publication of the paper.
DOI: 10.6084/m9.figshare.3557031.v1
title: Data Paper. Data Paper

description: File List Indo-Pacific Coral Range Boundaries.RData (MD5: 5a64b3116aeda4a828ed16fa1e5e3d02)Description Information on geographic ranges and the location of range boundaries of individual species is key to studies of biogeography, evolution, macroecology, and conservation biology. Traditionally, marine biogeography has emphasized patterns in contours of species or generic richness, based on counts of species collected from different locations. To understand more fully why these and other patterns occur requires data on the geographic extent of individual species, and how their ranges overlap. We compiled a spatial database of geographic range boundaries from the primary literature and from our own records for Indo-Pacific reef-building scleractinian corals (726 species in 17 families: Acroporidae, Agariciidae, Astrocoeniidae, Caryophylliidae, Dendrophylliidae, Euphyllidae, Faviidae, Fungiidae, Meandrinidae, Merulinidae, Oculinidae, Pocilloporidae, Poritidae, Mussidae, Pectiniidae, Siderastreidae, and Trachyphylliidae). Corals have strongly skewed range distributions, with many species being pandemics. The data show little support for Rapoport’s Rule (smaller ranges near the equator), or for the more general hypothesis that range sizes are smaller, on average, where species richness peaks. The unusual disparity between species richness and endemicity in locations such as the Coral Triangle hotspot challenges conservation priorities that tend to focus on hotspots and neglect depauperate locations. The empirically observed locations of ranges diverge from predictions of mid-domain models in ways that are consistent with the hypothesis that westward-flowing equatorial currents influence the species distributions of Indo-Pacific corals. The spatial database also can be used to examine species turnover at faunal boundaries, facilitating new studies that can explore barriers to dispersal and the evolution of geographic range size. <i>Key words</i>: <i>coral triangle hotspot; corals; endemics; geographic range; Indo-Pacific; pandemics; range boundaries; species richness.</i>
DOI: 10.6084/m9.figshare.9759260.v4
title: The time series data of each participant showing the coupling angles at lumbar/pelvic and pelvic/thigh segments.

description: S1 File.XLSX
DOI: 10.17632/4sw5hr2yz7
title: Dataset for QSAR Modeling of DPP-4 Inhibitors

description: The data that used for DPP-4 inhibitors QSAR modeling with machine learning methods were raw data from ChEMBL, initial processing data, and data partitioning for modeling which is divided into 3 parts i.e. training data, validation data (internal validation) and data test (external validation). This dataset also contained an explanation of the methods and tools used for modeling, and the predicted results of pIC50 values from the best model (from external validation data).
DOI: 10.17632/xxr7pxwmcm
title: 3D-printed beads with ABS and PLA: characterization and biotechnological prospecting in cell immobilization
DOI: 10.6084/m9.figshare.16965220.v1
title: consumption.csv

description: Consumption data<br>
DOI: 10.6084/m9.figshare.19428752.v1
title: Synthetic migration model evaluation input data

description: This zip file contains the input data used in the evaluation of the synthetic migration cohort-component model reported in the paper "Preparing local area population forecasts using a bi-regional cohort-component model without the need for local migration data"
DOI: 10.6084/m9.figshare.26087839.v1
title: HiGTS_2008s2

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2008s2 contains the data from April 1, 2008 to June 30, 2008.
DOI: 10.6084/m9.figshare.5662312.v4
title: Jerash Interpretation

description: Vectorised interpretations of possible archaeological features identified in airborne remote sensing (airborne laser scanning and aerial photographs dating back to 1917).<br>Used in the following article:<br>Stott, D., Kristiansen, S.M., Lichtenberger, A. and Raja, R., 2018. Mapping an ancient city with a century of remotely sensed data. <i>Proceedings of the National Academy of Sciences</i>, <i>115</i>(24), pp.E5450-E5458.<br><br>
DOI: 10.17632/rfkxk455mx
title: Twelve Years of Unconventional Development - Results of Cash flow Sensitivity Analysis on Price and Cost

description: This dataset was generated for research on twelve years of unconventional development. Five major unconventional formations in the US were studied: the Bakken, Eagleford, Haynesville, Marcellus, and Wolfcamp formations. The Bakken, Eagleford, and Wolfcamp produce oil as the major fluid phase while the Marcellus and Haynesville are gas plays. We developed 16 type curves per formation for wells completed in 2008 - 2019 (one curve per year excluding 2019 due to insufficient data) and identified four developmental phases of unconventional development over the past 12 years during which D&C technology, initial investment, and commodity prices were similar: Early development phase (Phase 1), Pre-downturn phase (Phase 2), Downturn phase (Phase 3), and Post downturn phase (Phase 4) - four additional curves. One overall type curve for each formation was also generated. The data shown below are the result of a financial performance analysis carried out. Using historical investment data and the generated type curves from historical production data, the financial performance of the wells for the next 15 years was studied using the following variable scenarios: Variable Value Min Max Oil Price ($/bbl) 60 20 100 Gas Price ($/Mcf) 3 1 6 Oil Opex ($/bbl) 5 2.5 10 Gas Opex ($/Mcf) 2 1 4 Water Opex ($/bbl) 3 - - Fixed cost ($/month) 2000 1000 4000 Working Interest 100% - - Royalty Burden 12.5% - - Discount Rate 10% 0% 100% Economic analysis was performed using the discounted cash flow model. At the end of each run, we extract some economic measures (explained in the introduction section) like the net cash flow (NCF), discounted net cash flow or net present value (NPV) at different investment opportunity (or discount) rates (𝑖𝑜𝑝), rate of return (ROR), payout, discounted and undiscounted return on investment (ROI) and the estimated oil and gas recoveries (EURs) at the economic limit. In addition, the type curve parameters used for each case were reported. NA value means that the case was uneconomic and hence those parameters evaluated to NA.
DOI: 10.4121/uuid:e4987a7b-04dd-4c89-9b18-883aad30ba9a
title: Autonomous Greenhouse Challenge, First Edition (2018)

description: The dataset contains data on greenhouse climate, irrigation, outside weather, greenhouse climate set points, harvest and crop management, resource consumption. Data were collected during a 4-month cucumber production (cv. Hi Power) in 6 glasshouse compartments (96 m2), located in Bleiswijk (The Netherlands). The dataset contains raw and processed data. Raw data were collected via climate measuring boxes, climate and irrigation process computer, manual registrations, outside weather station. The dataset was produced during the first edition of Autonomous Greenhouse Challenge, an international competition aiming at using Artificial Intelligence algorithms for the remote control of greenhouse horticulture production. Five international teams consisting of scientists, professionals and students participated in this experiment. The teams' names are: iGrow, deep_greens, AiCU, Sonoma, Croperators. They developed AI algorithms to remotely determine the Climate control set points and they additionally sent instructions for the crop pruning strategy. They had to realize the highest yield with minimal use of resources (e.g. water, CO2). The achievements in AI-controlled compartments were compared with a reference compartment, operated manually by three Dutch commercial growers (named Reference).
DOI: 10.6084/m9.figshare.21271137.v2
title: Seroprevalence of exposure to SARS-CoV-2 in domestic dogs and cats and its relationship with COVID-19 cases in the city of Villavicencio, Colombia

description: Raw data from the article "Seroprevalence of exposure to SARS-CoV-2 in domestic dogs and cats and its relationship with COVID-19 cases in the city of Villavicencio, Colombia". It includes the consent form and questionnaire used during the study, and information collected like the consecutive number, sex, age, species, commune, spectrophotometry results and Sample to Positive <em>Ratio</em> from the ELISA test performed from each dog and cat included in the study (435 tested animals). <br>