cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5cmncz59nx.2
title: Data for: Selecting the Optimal Antenna for Microwave Fracturing of Igneous Rocks

description: The datasets are for the manuscript: Selecting the Optimal Antenna for Microwave Fracturing of Igneous Rocks. They contian the antenna dimenson and the corresponding microwave power density (Table S1 and S2), the rock mineralogies (Table S3) and the heating and damage of the rock specimens when using the four different microwave antennas (Table S4).
DOI: 10.17632/r38mjyvfgr.3
title: Process Development of Polyhydroxyalkanoates Production by Halophiles Valorizing Municipal Food Waste with Spent Salts Recycling: Datasets and Supplemental Materials

description: This is an online dataset of a study entitled 'Process Development of Polyhydroxyalkanoates Production by Halophiles Valorizing Municipal Food Waste with Spent Salts Recycling'.
DOI: 10.17632/v46vwtfzbf.1
title: Effects of radial sand ridges on storm surge under different extreme weather events in the South Yellow Sea

description: 1. Coastline data
The specific data about the coastline of the computational domain in the paper.
2. Computational domain mesh
The mesh of the study area contains the Bohai Sea and the Yellow Sea.
DOI: 10.17632/f38m748pz9.1
title: A knowledge scale about behavioral and psychological symptoms of dementia (KS-BPSD) among Chinese formal caregivers

description: The current study aimed to develop a scale assessing knowledge about behavioral and psychological symptoms of dementia (KS-BPSD) among Chinese formal caregivers and to investigate its psychometric properties and factorial structure.
DOI: 10.17632/hr95zy2kgy.2
title: Mixed-integer linear programming models for the type-II resource-constrained assembly line balancing problem

description: Paper's dataset with benchmark-based instances and obtained results.
DOI: 10.17632/sjm3cytytn.2
title: Data automation of PCR laboratory on Covid-19: Experience from Kazakhstan

description: The purpose of the article is to demonstrate the experience of work on the automation of the PCR laboratory studies on COVID-19. Automation is carried out on the platform of the SmartLAB Kazakhstan laboratory information system, which is fully adapted for the PCR laboratory and covers all laboratory processes from registration to the issuance of results, including integration with information systems of the government. Forms of results issued to patients contain a QR code that allows you to verify the reliability of the result. Furthermore, the information systems of state bodies exercise control and supervision over the regulation of the epidemiological situation in the country. For this, it keeps records of each PCR study within the country. Furthermore, LIS helps to reduce the issuance of PCR results, namely, after the receipt of the biomaterial to the laboratory, the patient receives the result in 4 hours online, and information about the development exported to the information systems of government agencies, activating the patient's status in Ashyq systems, Travel without Covid-19. The presented work results from the complete automation of the PCR laboratories in Kazakhstan (cities Nur-Sultan, Almaty, Karaganda, Ust-Kamenogorsk, Atyrau, Aktau).
DOI: 10.17632/zw3ttj862d.2
title: Involvement of D-Aspartate in releasing GnRH, LH and Stimulation of Testosterone Production

description: This review is focuses on the contribution of D form Aspartic acid in Hypothalamus, Pituitary and Leydig cell of vertebrate’s testis that lead to the production of GnRH, LH and Testosterone respectively
DOI: 10.17632/shvph7b6t3.8
title: Interventions for molluscum contagiosum: a systematic review and network meta-analysis with normalized entropy assessment 

description: Supplementary tables and figures
DOI: 10.21227/ahmq-bh76
title: S21 measurement data inside a mode stirred reverberation chamber

description: Reverberation chamber (RC) is a metal cavity which is often used for EMC measurements. During the last couple of decades, RCs have proved itself to be a useful tool for Over-the-air (OTA) measurements such as antenna efficiency, diversity gain, etc. A well mode stirred RC produces Rayleigh fading environment which is considered as a common test environment for testing wireless devices such as mobile phones in GSM, WCDMA, UMTS and LTE frequency ranges. Studies have shown OTA characterization of wireless devices inside RC in terms of OTA throughput, TIS (Total Isotropic Sensitivity) and TRP (Total Radiated Power) have very good agreement with OTA measurements inside Anechoic chambers.The given dataset is a callibration data, i.e. S-parameters measured using Vector Network Analyzer (VNA). More specifically, the dataset consists of only S21 measured between two antennas inside RC. The RC has several mode stirrers and there is no direct line-of-sight between the two antennas. The measurement is done using stepped stirring configuration meaning that the stirrers were static when VNA was sweeping thru the frequency range. The measurements were divded into 3 parts due to the limited frequency of operation of callibration antennas, i.e. 0.5 - 2.0 GHz, 2.0 - 6.0 GHz and 6.0 - 50.0 GHz. The data set may be extended up to 67 GHz in the future. We have measured 600 samples per frequency point and the measurement resolution is 1 MHz.
DOI: 10.5281/zenodo.6977318
title: Origin and diversification of free-living stick spiders of Sri Lanka including the description of four new species of Rhomphaea L. Koch, 1872 and two new species of Neospintharus Exline, 1950

description: Nexus files of the combined matrix and the single gene matrices.
DOI: 10.5281/zenodo.6977317
title: Origin and diversification of free-living stick spiders of Sri Lanka including the description of four new species of Rhomphaea L. Koch, 1872 and two new species of Neospintharus Exline, 1950

description: Nexus files of the combined matrix and the single gene matrices.
DOI: 10.5281/zenodo.6977306
title: Dataset for publication 'Automated computed tomography based parasitoid detection in mason bee rearings'

description: Dataset corresponding to the publication <strong>Automated computed tomography based parasitoid detection in mason bee rearings </strong>published at PLOS One. This repository contains the training, validation and test data.
DOI: 10.5281/zenodo.6977305
title: Dataset for publication 'Automated computed tomography based parasitoid detection in mason bee rearings'

description: Dataset corresponding to the publication <strong>Automated computed tomography based parasitoid detection in mason bee rearings </strong>published at PLOS One. This repository contains the training, validation and test data.
DOI: 10.5066/p94ul1z1
title: Brook trout imagery data for individual recognition with deep learning

description: This Data Release provides imagery data for the development of deep-learning models to recognize individual brook trout (n=435). Images were collected at the Paint Bank State Fish Hatchery (Paint Bank, VA) on August 9, 2021 using a GoPro Hero 9 camera mounted approximately 50 cm above a fish board. The Paint Bank State Fish Hatchery is operated by the Virginia Department of Wildlife Resources.
DOI: 10.6084/m9.figshare.20383014
title: Complete assembly, annotation of virulence genes and CRISPR editing of the genome of Leishmania amazonensis PH8 strain

description: <em>Leishmania amazonensis</em> is one of the etiological agents of tegumentary and visceral leishmaniasis. Genome studies focusing on genes encoding virulence factors that play crucial roles in the establishment of the infection constitute an essential step towards the molecular characterization of a protozoan parasite that is being increasingly recognized as a significant human pathogen. Here, we report the <sub>sequencing</sub> <sub>and</sub> <sub>assembly</sub> <sub>of</sub> <sub>the</sub> <sub><em>L</em></sub><em>. amazonensis </em>PH8 strain combining data from long Pacbio reads, short Illumina reads and synteny with the <em>Leishmania mexicana</em> genome. The final assembly, composed of 34 chromosomes, represents a genome of ~32 Mb with 8317 annotated genes. Several multigene families encoding virulence factors, such as A2, amastins, metalloproteins GP63 and cysteine proteases, were identified and compared to their annotation in the genomes of other <em>Leishmania</em> species. The <em>L. amazonensis </em>PH8 strain genome has 29 genes encoding all four subclasses of amastins (α, β, γ and δ), 5 genes encoding A2 antigens, 9 genes encoding the metalloprotease GP63 and 76 genes encoding cysteine proteases. For all gene families analysed, we identified a larger number of copies and presented a more complete gene repertoire associated with the virulence of <em>L. amazonensis</em>, compared to previously published genomes. As they have been recently recognized as virulence factors essential for disease establishment and progression of the infection, we have also identified 14 genes encoding proteins involved in the parasite iron and heme metabolism and compared them to this gene repertoire in other Trypanosomatids. To follow these studies with a genetic approach that allows to directly address the role of these virulence factors, we tested two CRISPR-Cas9 protocols to generate <em>L. amazonensis</em> knockout cell lines. Using the Miltefosine transporter (MT) gene as a proof of concept, we transfected promastigotes expressing the <em>Streptococcus pyogenes</em> Cas9 with <em>in vitro</em> transcribed sgRNA targeting this gene. As an alternative protocol, promastigotes were transfected with recombinant <em>S. aureus </em>Cas9 complexed with sgRNAs. With both strategies, we were able to disrupt the MT gene with high efficiency, as shown by the development of miltefosine-resistant parasites well as by PCR and restriction digestion analysis of the edited gene.
DOI: 10.6084/m9.figshare.20383014.v17
title: Complete assembly, annotation of virulence genes and CRISPR editing of the genome of Leishmania amazonensis PH8 strain

description: <em>Leishmania amazonensis</em> is one of the etiological agents of tegumentary and visceral leishmaniasis. Genome studies focusing on genes encoding virulence factors that play crucial roles in the establishment of the infection constitute an essential step towards the molecular characterization of a protozoan parasite that is being increasingly recognized as a significant human pathogen. Here, we report the <sub>sequencing</sub> <sub>and</sub> <sub>assembly</sub> <sub>of</sub> <sub>the</sub> <sub><em>L</em></sub><em>. amazonensis </em>PH8 strain combining data from long Pacbio reads, short Illumina reads and synteny with the <em>Leishmania mexicana</em> genome. The final assembly, composed of 34 chromosomes, represents a genome of ~32 Mb with 8317 annotated genes. Several multigene families encoding virulence factors, such as A2, amastins, metalloproteins GP63 and cysteine proteases, were identified and compared to their annotation in the genomes of other <em>Leishmania</em> species. The <em>L. amazonensis </em>PH8 strain genome has 29 genes encoding all four subclasses of amastins (α, β, γ and δ), 5 genes encoding A2 antigens, 9 genes encoding the metalloprotease GP63 and 76 genes encoding cysteine proteases. For all gene families analysed, we identified a larger number of copies and presented a more complete gene repertoire associated with the virulence of <em>L. amazonensis</em>, compared to previously published genomes. As they have been recently recognized as virulence factors essential for disease establishment and progression of the infection, we have also identified 14 genes encoding proteins involved in the parasite iron and heme metabolism and compared them to this gene repertoire in other Trypanosomatids. To follow these studies with a genetic approach that allows to directly address the role of these virulence factors, we tested two CRISPR-Cas9 protocols to generate <em>L. amazonensis</em> knockout cell lines. Using the Miltefosine transporter (MT) gene as a proof of concept, we transfected promastigotes expressing the <em>Streptococcus pyogenes</em> Cas9 with <em>in vitro</em> transcribed sgRNA targeting this gene. As an alternative protocol, promastigotes were transfected with recombinant <em>S. aureus </em>Cas9 complexed with sgRNAs. With both strategies, we were able to disrupt the MT gene with high efficiency, as shown by the development of miltefosine-resistant parasites well as by PCR and restriction digestion analysis of the edited gene.
DOI: 10.6084/m9.figshare.20383014.v16
title: Complete assembly, annotation of virulence genes and CRISPR editing of the genome of Leishmania amazonensis PH8 strain

description: <em>Leishmania amazonensis</em> is one of the etiological agents of tegumentary and visceral leishmaniasis. Genome studies focusing on genes encoding virulence factors that play crucial roles in the establishment of the infection constitute an essential step towards the molecular characterization of a protozoan parasite that is being increasingly recognized as a significant human pathogen. Here, w<sub>e</sub> <sub>report</sub> the <sub>sequencing</sub> <sub>and</sub> <sub>assembly</sub> <sub>of</sub> <sub>the</sub> <sub><em>L</em></sub><em>. amazonensis </em>PH8 strain combining data from long PacBio reads, short Illumina reads and synteny with the <em>Leishmania mexicana</em> genome. The final assembly, composed of 34 chromosomes, represents a genome of ~32 Mb with 8317 annotated genes. Several multigene families encoding virulence factors, such as A2, amastins, metalloproteins GP63 and cysteine proteases, were identified and compared to their annotation in the genomes of other <em>Leishmania</em> species. The <em>L. amazonensis </em>PH8 strain genome has 27 genes encoding all four sub-classes of amastins (α, β, γ and δ), 5 genes encoding A2 antigens, 9 genes encoding the metalloprotease GP63 and 76 genes encoding cysteine proteases. For all gene families analysed, we identified a larger number of copies and presented a more complete gene repertoire associated with <em>L. amazonensis </em>virulence factors, compared to previously published genomes. As they have been recently recognized as virulence factors essential for disease establishment and progression of the infection, we have also identified 14 genes encoding proteins involved in the parasite iron and heme metabolism and compared them to this gene repertoire in other Trypanosomatids. To follow these studies with a genetic approach that would allow us to directly address the role of these virulence factors, we tested two CRISPR-Cas9 protocols to generate <em>L. amazonensis</em> knockout cell lines. Using the Miltefosine Transporter (MT) gene as a proof of concept, we transfected promastigotes expressing the <em>Streptococcus pyogenes</em> Cas9 with <em>in vitro</em> transcribed sgRNA targeting this gene. As an alternative protocol, promastigotes were transfected with recombinant <em>Staphylococcus aureus </em>Cas9 complexed with sgRNAs. With both strategies, we were able to disrupt the MT gene with high efficiency, as shown by PCR and restriction digestion analysis as well as the development of miltefosine-resistant parasites.
DOI: 10.5281/zenodo.6977341
title: PhD Dataset for Television Mental Emotional & Social Health 500+ cases

description: Dataset for research of Mental, Emotional and Social Health barriers and issues Self image Poverty finances Work Related. Chicagoland and radius. Televisied help and support with cases identified and categorized.
DOI: 10.5281/zenodo.6977340
title: PhD Dataset for Television Mental Emotional & Social Health 500+ cases

description: Dataset for research of Mental, Emotional and Social Health barriers and issues Self image Poverty finances Work Related. Chicagoland and radius. Televisied help and support with cases identified and categorized.
DOI: 10.21227/fqws-9g10
title:  Automated measurement of fetal head circumference using 2D ultrasound images

description: The data is divided into a training set of 999 images and a test set of 335 images. The size of each 2D ultrasound image is 800 by 540 pixels with a pixel size ranging from 0.052 to 0.326 mm. The pixel size for each image can be found in the csv files: ‘training_set_pixel_size_and_HC.csv’ and ‘test_set_pixel_size.csv’. The training set also includes an image with the manual annotation of the head circumference for each HC, which was made by a trained sonographer.
DOI: 10.34740/kaggle/ds/2299484
title: Referees income level in Madrid
DOI: 10.5066/p9x86y66
title: Cole's Bayou Marsh Restoration (TV-63): 2018 land-water classification

description: The Louisiana State Legislature created the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in order to conserve, restore, create and enhance Louisiana's coastal wetlands. The wetland restoration plans developed pursuant to these acts specifically require an evaluation of the effectiveness of each coastal wetlands restoration project in achieving long-term solutions to arresting coastal wetlands loss. This data set includes mosaicked aerial photographs for the Cole's Bayou Marsh Restoration (TV-63) project for 2018. This data is used as a basemap land-water classification. It also serves as a visual tool for project managers to help them identify any obvious problems or land loss within their project boundary. To [...]
DOI: 10.5281/zenodo.6977339
title: Enterobacter cloacae complex (E. bugandensis species, ST599) strain associated with a catheter-related bloodstream infection (CRBSI) (genome assembly and annotation dataset)

description: This dataset includes the assembled contigs (.fasta and .gbk files), the nucleotide sequences of the prediction transcripts (.ffn files) and the respective amino acid sequences of the translated CDS sequences (.faa files) of a <em><strong>Enterobacter cloacae </strong></em><strong>complex</strong><em><strong> (E. bugandensis </strong></em><strong>species</strong><em><strong>, </strong></em><strong>ST599</strong><em><strong>) </strong></em>strain associated with a catheter-related bloodstream infection (CRBSI) (genome anotation was performed using Prokka v1.14.5; https://github.com/tseemann/prokka) The raw sequence reads were deposited in the European Nucleotide Archive (ENA) (BioProject PRJEB45360; Run Accession: ERR10044433).
DOI: 10.5281/zenodo.6977338
title: Enterobacter cloacae complex (E. bugandensis species, ST599) strain associated with a catheter-related bloodstream infection (CRBSI) (genome assembly and annotation dataset)

description: This dataset includes the assembled contigs (.fasta and .gbk files), the nucleotide sequences of the prediction transcripts (.ffn files) and the respective amino acid sequences of the translated CDS sequences (.faa files) of a <em><strong>Enterobacter cloacae </strong></em><strong>complex</strong><em><strong> (E. bugandensis </strong></em><strong>species</strong><em><strong>, </strong></em><strong>ST599</strong><em><strong>) </strong></em>strain associated with a catheter-related bloodstream infection (CRBSI) (genome anotation was performed using Prokka v1.14.5; https://github.com/tseemann/prokka) The raw sequence reads were deposited in the European Nucleotide Archive (ENA) (BioProject PRJEB45360; Run Accession: ERR10044433).
DOI: 10.34740/kaggle/dsv/4049104
title: CIC-DDoS2019
DOI: 10.5281/zenodo.6977326
title: PyKEEN Reproducibility Experiment Model Files

description: This repository provides weights of the models from the reproducibility study conducted in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework" which have been upgraded to compatible with PyKEEN 1.9.
description: {"references": ["Ali, Mehdi et al. (2020). Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework. arXiv: 2006.13365"]}
DOI: 10.5281/zenodo.6977325
title: PyKEEN Reproducibility Experiment Model Files

description: This repository provides weights of the models from the reproducibility study conducted in "Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework" which have been upgraded to compatible with PyKEEN 1.9.
description: {"references": ["Ali, Mehdi et al. (2020). Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework. arXiv: 2006.13365"]}
DOI: 10.6084/m9.figshare.20457435
title: Low impact of randomized controlled trials published in Latin American journals indexed in MEDLINE over a 6-year periodLow impact of randomized controlled trials published in Latin American journals indexed in MEDLINE over a 6-year period

description: <strong>Objective</strong> The prevalence of inclusion of randomised controlled trials (RCTs) published in Latin American journals has not been evaluated yet. This study aims to assess the extent to which RCTs published in Latin American medical journals are cited and used in systematic reviews. <strong>Study design and setting</strong> We did a descriptive observational study on RCTs published in MEDLINE-indexed Latin American journals from 2010 to 2015. The primary outcome was the inclusion of these trials in systematic reviews. The secondary outcome was the total number of citations that each RCT received as reported by Google Scholar. <strong>Results</strong> Twenty-nine journals were selected. After searching these journals, we found 135 RCTs that fulfilled the inclusion criteria. These RCTs accounted for 2% of all research articles published in these journals. Of these, 55 (41%) were included by 202 systematic reviews. Of the nine most-cited RCTs by systematic reviews and meta-analyses, only two were published in Spanish. Nine RCTs received zero citations by any article type. Most RCTs had small sample sizes. <strong>Conclusions</strong> The overall impact of RCTs published in Latin American journals is low. Efforts are needed to improve the methodological quality, pertinence and dissemination of trials, particularly if published in Spanish.
DOI: 10.6084/m9.figshare.20457435.v1
title: Low impact of randomized controlled trials published in Latin American journals indexed in MEDLINE over a 6-year periodLow impact of randomized controlled trials published in Latin American journals indexed in MEDLINE over a 6-year period

description: <strong>Objective</strong> The prevalence of inclusion of randomised controlled trials (RCTs) published in Latin American journals has not been evaluated yet. This study aims to assess the extent to which RCTs published in Latin American medical journals are cited and used in systematic reviews. <strong>Study design and setting</strong> We did a descriptive observational study on RCTs published in MEDLINE-indexed Latin American journals from 2010 to 2015. The primary outcome was the inclusion of these trials in systematic reviews. The secondary outcome was the total number of citations that each RCT received as reported by Google Scholar. <strong>Results</strong> Twenty-nine journals were selected. After searching these journals, we found 135 RCTs that fulfilled the inclusion criteria. These RCTs accounted for 2% of all research articles published in these journals. Of these, 55 (41%) were included by 202 systematic reviews. Of the nine most-cited RCTs by systematic reviews and meta-analyses, only two were published in Spanish. Nine RCTs received zero citations by any article type. Most RCTs had small sample sizes. <strong>Conclusions</strong> The overall impact of RCTs published in Latin American journals is low. Efforts are needed to improve the methodological quality, pertinence and dissemination of trials, particularly if published in Spanish.
DOI: 10.6084/m9.figshare.20449911.v1
title: Walleye Fecundity Analysis

description: Data file and R code used in analysis of Red Lakes Walleye fecundity
DOI: 10.6084/m9.figshare.20457396.v2
title: [SBES 22] Perceptions of Technical Debt and its Management Activities - A Survey of Software Practitioners

description: Supplementary material of the paper "Perceptions of Technical Debt and its Management Activities - A Survey of Software Practitioners". XXXVI Brazilian Symposium on Software Engineering.