cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/m262xxpgn2
title: A Deep Generative Modeling Architecture for Designing Lattice-Constrained Materials

description: This dataset supports the article: contains all Crystallographic Information Files (CIF) and Quantum Espresso (QE) geometry optimization output files for the 124 perovskite materials that were newly designed using the Lattice-Constrained Materials Generative Model (LCMGM). CIF files were written using the Python Materials Genomics (Pymatgen) software package. For geometrical optimization, QE performs spin-polarized plane-wave calculations using the Perdew-Burke-Ernzerhof (PBE) pseudopotential class. The preprocessed dataset used for deep learning, relevant source codes for developing the LCMGM model, and Crystallographic Information Files (CIF) of newly designed materials are equally made available on GitHub: http://github.com/chenebuah/LCMGM
DOI: 10.6084/m9.figshare.14169491.v1
title: Stevia rebaudiana genome data

description: Stevia rebaudiana genome fasta and gff3 files<br>
DOI: 10.6084/m9.figshare.21959552.v1
title: <strong>A fast chemical reprogramming system promotes cell identity transition through a diapause-like state</strong>

description: Raw data of screening the chemical libraries during mouse chemical reprogramming.
DOI: 10.6084/m9.figshare.23765361.v2
title: Dataset and analyses for "Differences in estimates of extinction risk between occupancy and abundance data"

description: Dataset and scripts used to analyse population trends of four amphibian species in norther Italy to compare estimates of threat status between occupancy and abundance models.
<br>
The files contain:
<br>
1) Dataset used, containing species detections/non-detections, counts, and covariates of detection, in Rdata format. These data were directly collected on the field by the authors.
<br>
2) Bayesian occupancy and abundance models written for the "nimble" R package (BUGS language).
<br>
3 and 4) Scirpts used to run respectively the occupancy and abundance models with nimble.
DOI: 10.6084/m9.figshare.26360689.v1
title: Supplemental Table 1

description: Immunity
DOI: 10.6084/m9.figshare.c.3875800_d1.v1
title: Additional file 1: of Evidence-based gene models for structural and functional annotations of the oil palm genome

description: Includes information of oil palm RNA-seq data, annotation of IG, R genes and FAB genes, GO and GC3. (XLSX 8028Â kb)
DOI: 10.17632/5r89zptx96
title: Bitcoin

description: Bitcoin forecast 2018-2021
DOI: 10.17632/m2swkr2bhx
title: HASSANIYA Dataset

description: The attached file is the first Mauritanian dialect dataset called “HASSANIYA” containing two thousand records classified into three categories: positive, negative and neutral. This dataset was collected using web scraping tools from comments posted on the Facebook platform, and Label Studio was used to annotate each record.
DOI: 10.6084/m9.figshare.3563193.v1
title: Appendix B. Mean annual temperature (MAT), mean annual precipitation (MAP), and the most common habitat for the ant species included in this study.

description: Mean annual temperature (MAT), mean annual precipitation (MAP), and the most common habitat for the ant species included in this study.
DOI: 10.6084/m9.figshare.7563833.v1
title: Additional file 3: of Bacterial and viral pathogen-associated molecular patterns induce divergent early transcriptomic landscapes in a bovine macrophage cell line

description: KEGG pathways generated for poly(I:C)vs Con, CpG DNA vs Con, and poly(I:C) vs CpG DNA (XLSX 98 kb)
DOI: 10.6084/m9.figshare.7871522.v1
title: Ocean acidification does not impair the behaviour of coral reef fishes

description: Data for: Clark TD, Raby GD, Roche DG, Binning SA, Speers-Roesch B, Jutfelt F, Sundin J (2020) Ocean acidification does not impair the behaviour of coral reef fishes. https://doi.org/10.1038/s41586-019-1903-y<br>Please see the readme.txt file for metadata.<br>Abstract: The partial pressure of CO2 in the oceans has increased rapidly over the past century, driving ocean acidification and raising concern for the stability of marine ecosystems1–3. Coral reef fishes are predicted to be especially susceptible to end-of century ocean acidification on the basis of several high-profile papers that have reported profound behavioural and sensory impairments—for example, complete attraction to the chemical cues of predators under conditions of ocean acidification. Here, we comprehensively and transparently show that—in contrast to previous studies—end-of-century ocean acidification levels have negligible effects on important behaviours of coral reef fishes, such as the avoidance of chemical cues from predators, fish activity levels and behavioural lateralization (left–right turning preference). Using data simulations, we additionally show that the large effect sizes and small within-group variances that have been reported in several previous studies are highly improbable. Together, our findings indicate that the reported effects of ocean acidification on the behaviour of coral reef fishes are not reproducible, suggesting that behavioural perturbations will not be a major consequence for coral reef fishes in high CO2 oceans.
DOI: 10.6084/m9.figshare.21069763.v1
title: Supplementary Material for: Meta-Analysis of the Use of Head Impulse Test and Head Impulse Test with Direction Changing Nystagmus and Test of Skew Deviation in the Diagnosis of Peripheral Vertigo and Stroke

description: <b><i>Introduction:</i></b> The head impulse test (HIT) and HIT combined with direction-changing Nystagmus-Test of Skew deviation (HINTS) have been proposed as bedside tests to differentiate between peripheral and central causes of vertigo in the emergency department (ED). We conducted a meta-analysis of the HIT and HINTS tests to diagnose peripheral vertigo (PV) and central vertigo. <b><i>Methods:</i></b> Pubmed, Google Scholar, EmBase, and articles references published in English up to July 2021 were searched for keywords “vertigo” or “acute vestibular syndrome” or “dizziness” and “head impulse” and “stroke.” The bivariate method for meta-analysis was used to calculate positive (PLR) and negative likelihood ratios (NLR) and summary receiver operating characteristics area under the curve (AUC). <b><i>Results:</i></b> A total of 11 studies were included analysing both HIT (8 studies, <i>N</i> = 417) and HINTS (6 studies, <i>N</i> = 405). HIT and HINTS were performed within 24 h in 4 of 11 studies. PLR and NLR for HIT in PV was 4.85 (95% CI: 2.83–8.08) and 0.19 (95% CI: 0.12–0.29, <i>I</i><sup>2</sup> 63.25%), respectively. The AUC for HIT the diagnosis of PV and stroke was 0.90 and 0.92, respectively. PLR and NLR for a negative HIT in stroke was 5.85 (95% CI: 3.07–10.6) and 0.17 (95% CI: 0.08–0.30), respectively. PLR and NLR for peripheral HINTS pattern for PV was 17.3 (95% CI: 8.38–32.1) and 0.15 (95% CI: 0.07–0.26), respectively. PLR and NLR for central HINTS pattern for stroke: 5.61 (95% CI: 4.19–7.7) and 0.06 (95% CI: 0.03–0.12). In all included studies, HIT and HINTS exams were administered by neurology residents or neurology specialists with additional neuro-otology or neuro-ophthalmology subspeciality experience, and two studies included ED physicians. Raters reported high degree of bias and high concern regarding applicability in most domains of the quality assessment of diagnostic accuracy studies (QUADAS-2) tool. Meta-regression did not demonstrate a statistically significant effect of publication year, time to test, and type of assessor on sensitivity or false positive rate. <b><i>Conclusion:</i></b> The HIT and HINTS exams appear to be moderately good discriminators of central and PV. However, in most papers, the tests were administered by neurologists and were evaluated beyond 24 h, which may limit utility in the ED setting.
DOI: 10.6084/m9.figshare.25504699.v2
title: Data for A phylogenomic tree of wood-warblers (Aves: Parulidae): dealing with good, bad, and ugly samples

description: The New World warblers (Parulidae) are a model group for ecological and evolutionary analyses. However, current phylogenetic relationships across this family are based upon few loci. Here we use ultraconserved elements (UCEs) to estimate a rigorous species-level phylogeny for the family. As is true for many groups, high-quality tissues were unavailable for some taxa. Thus, we explored methods for incorporating sequences derived from historical (toe pad) samples to expand the phylogenetic datasets. We recovered an average of 4186 UCE loci and mitochondrial bycatch data (supplemented with published mitochondrial data) from 96% of all currently recognized species. We found that the UCE phylogeny built with alignments with less than 70% of gaps and ambiguities recovered the most robust phylogenetic relationships for this family, representing 102 taxa (101 species). Using this phylogeny as a topological backbone and adding ten low quality samples effectively generated an overall well supported phylogeny, representing 112 taxa (108 species, ~90% of all species). Based on this tree, we then added in seven poor quality samples and six of those were placed within their expected genera. We also explored the phylogenetic positions of the likely extinct <i>Leucopeza semperi</i> and the endangered <i>Catharopeza bishopi</i> where very limited data was obtained.Here, we have included original alignments (zip files), concatenated datasets (in NEXUS format), the best-fit partitioning models estimated by IQ-TREE, individual gene trees, ASTRAL tree, concatenation trees and mitogenome tree.
DOI: 10.6084/m9.figshare.3146257.v1
title: Mid Latitude Time Series

description: These are global averages of atmospheric, land surface and oceanic fields with model output from deforestation experiments with the University of Victoria Earth System Model. Files contain time series covering the 21st century for simulations that removed from 5% to 100% of forests between 20˚ and 45˚ north and 20˚ and 45˚ south (Mid Latitudes)
DOI: 10.6084/m9.figshare.4516772.v2
title: German Migrant Letters Complete Corpus

description: This is a dataset used to visualise the correspondence of German-speaking migrants in the US between 1830 and 1970, . <br> The Forschungsbibliothek Gotha holds most of the letters in hard copy along with some additional information which we have not digitised. We are thankful for having been granted extensive access and helpful advice by Monika Hasenmüller. Wolfgang Helbich started the collection in the 1980s and Ursula Lehmkuhl now administers it.<br><br>More information to follow.<br>
DOI: 10.17632/hbdst9vr2x
title: Matriz unidades de análisis

description: Se realizó una investigación secundaria, con diseño de revisión integrativa de la literatura, siguiendo la propuesta por Sasso, de Campos y Galvão, que sugiere seis fases para este proceso. En la primera, se estableció la pregunta PICO: ¿Cuál es el cuidado de enfermería a mujeres que presentan hemorragia post parto para disminuir el riesgo de shock hipovolémico? En la segunda fase, se formularon ecuaciones de búsqueda con los operadores booleanos AND y OR, utilizando los DeCS: Hemorragia posparto, Postpartum Hemorrhage, Hemorragia Pós-Parto. Nursing Care, Atención de enfermería, Cuidados de Enfermagem. Shock, Choque; y los MeSH: Immediate Postpartum Hemorrhage, Delayed Postpartum Hemorrhage. Nursing Care Management. Circulatory Failure, Circulatory Collapse, Hypovolemic shock.
DOI: 10.17632/mr9pckgmms
title: data_pl

description: Purple rapeseed dataset contains input images with 4 patch sizes： 64 × 64， 128 × 128， 256 × 256，and 512 × 512 pixels. Each included training set and test set with RGB images which were cropped using UAV orthoimage and the corresponding labels. The code for the U-Net model used in this experiment was also assigned to the folder.
DOI: 10.6084/m9.figshare.11866047.v1
title: Optimization outputs

description: Outputs from multi-objective genetic algorithm
DOI: 10.6084/m9.figshare.26089371.v1
title: HiGTS_2022s2

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2022s2 contains the data from April 1, 2022 to June 30, 2022.
DOI: 10.6084/m9.figshare.27887943.v1
title: Actual data.sav

description: This data is related to construction sector
DOI: 10.6084/m9.figshare.28311884.v1
title: Atorvastatin neuronal morphology data_CP.xlsxData set: neuronal morphology

description: Birds received either 40 mg/kg of atorvastatin in water or water vehicle once daily for 2 - 3 months until they reached adulthood. We labeled newborn cells using systemic injections of bromodeoxyuridine (BrdU) and quantified cells double-labeled with antibodies for BrdU and the neuron-specific protein Hu 30 - 32 days post mitosis. We also quantified a younger cohort of new neurons in the same birds using antibody to the neuronal protein doublecortin (DCX). We then compared numbers of new neurons and soma morphology of BrdU+/Hu+ neurons between statin-treated and control birds. We did not find an effect of statins on the density of newly formed neurons in either brain region, suggesting that statin treatment did not impact neurogenesis or young neuron survival in our paradigm. However, we found that neuronal soma morphology differed significantly between statin-treated and control birds. Somata of BrdU+/Hu+ (30 – 32 day old) neurons were flatter and had more furrowed contours in statin-treated birds relative to controls. In a larger, heterogeneous cohort of non-birthdated BrdU-/Hu+ neurons, largely born prior to statin treatment, somata were smaller in statin-treated birds than in controls. Our findings indicate that atorvastatin may affect neural cytoarchitecture in both newly formed and mature neurons, perhaps as a consequence of decreased cholesterol availability in the brain.
DOI: 10.6084/m9.figshare.29067536.v1
title: Breast cancer screening programmes and breast cancer mortality: An observational study of 194 countries: Supplementary materials

description: <b>Supplementary content:</b><b>Table S1:</b> GATHER statement checklist, with a description of compliance and location of information for "Breast Cancer Screening Programs and Breast Cancer Mortality: An Observational Study of 194 Countries”<b>Table S2:</b> Countries with regular breast cancer screening programs at the national level, 2015–2021<b>Table S3:</b> Countries with inconsistent breast cancer screening programs at the national level, 2015–21<b>Table S4:</b> Countries without any breast cancer screening programs at the national level, 2015–2021<b>Table S5:</b> Annualized changes in age-standardized breast cancer mortality across the countries from 2015–2021
DOI: 10.15468/dl.cpdtq2
title: Occurrence Download

description: A dataset containing 13484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Poa alpina L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 13484 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013212-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13834478.v1
title: Ribosomal protein database of Listeria floridensis

description: This work presents the ribosomal protein database of <i>Listeria floridensis. </i>Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.
DOI: 10.6084/m9.figshare.14273576.v1
title: Global snowmelt onset dataset from spaceborne radiometer observations

description: A 40-year integrated global snowmelt onset dataset (1979–2018) is produced by combining the estimates over sea ice, ice sheets and the terrestrial snow from spaceborne microwave radiometers. <br>The melt onset dataset is produced over the Northern Hemisphere (NH) and Southern Hemisphere (SH) for each year, with a spatial resolution of 25 km. Note that NH_1987 is not included due to the continuous missing of satellite observations. <br>The globally integrated snowmelt onset (MO) dataset brings new insights into the climate dynamics in the cryosphere and the associated atmospheric controls.<br>
DOI: 10.6084/m9.figshare.1587086.v1
title: Dataset Resin infiltration in fluorotic teeth

description: Original dataset of resin infiltration in fluorotic teeth
DOI: 10.6084/m9.figshare.19114847.v1
title: GPP estimates from DGVM

description: GPP model mean of six DGVMs output for the “temperate broadleaf deciduous” plant functional type.
DOI: 10.6084/m9.figshare.19453580.v2
title: Full data for temperature post-processing

description: Full dataset for the multivariate post-processing of 2 m temperature, data in the feather format, forecast data from ECMWF.
DOI: 10.6084/m9.figshare.22574206.v1
title: The genome of Decapterus maruadsi

description: The genome of <em>Decapterus maruadsi </em>
DOI: 10.17632/9k5763jp8j
title: Raw interior temperature time series

description: Temporal Raw sensor data series of the interior temperature in a home environment. The sensor was placed near a window and shows daily shift depending on whether the sun was hitting the sensor not. The temperature data is in °C. The data was taken using the internal temperature sensor from a MPU6050, with a sampling period of 10 s. The data collection was started on 04/03/2021 @ 18:08, until 09/03/2021 @ 18:10. The total data series contains 43233 individual data points.
DOI: 10.6084/m9.figshare.14583213.v2
title: Nonlinear fracture flow datasets

description: Correction coefficient in the equation (9) and Pressure-flux curves
DOI: 10.6084/m9.figshare.25219526.v1
title: Data from: "Single-cell analyses identify monocyte gene expression profiles that influence HIV-1 reservoir size in acutely treated cohorts"

description: <b>Abstract</b>Eliminating latent HIV-1 is a major goal of AIDS research but host factors determining the size of these reservoirs are poorly understood. Here, we investigate the role of host gene expression on HIV-1 reservoir size during suppressive antiretroviral therapy (ART). Peripheral blood cells of fourteen males initiating ART during acute infection and demonstrating effective viral suppression but varying magnitudes of total HIV-1 DNA were characterized by single-cell RNA sequencing. Differential expression analysis demonstrates increased CD14+ monocyte activity in participants having undetectable HIV-1 reservoirs, with <i>IL1B</i> expression inversely associating with reservoir size.<i> </i>This is validated in another cohort of 38 males comprised of different ancestry and HIV-1 subtypes, and with intact proviral DNA assay (IPDA®) measurements. Modeling interactions show monocyte <i>IL1B </i>expression associates inversely with reservoir size at higher frequencies of central memory CD4+ T cells, linking monocyte <i>IL1B</i> expression to cell types known to be reservoirs for persistent HIV-1. Functional analyses reveal that IL1B activates NF-κB, thereby promoting productive HIV-1 infection while simultaneously suppressing viral spread, suggesting a natural latency reversing activity to deplete the reservoir in ART-treated individuals. Altogether, scRNA-seq analyses reveal that monocyte <i>IL1B</i> expression could decrease HIV-1 proviral reservoirs in individuals initiating ART during acute infection.
DOI: 10.17632/swk27btvgd
title: Updating ”Medical Radar Signal Dataset for Non-Contact Respiration and Heart Rate Measurement” with Expanded Data on Laboratory Rats under Isoflurane Anesthesia

description: The data were collected using a noncontact vital sign monitoring system. The system includes: (1) a Raspberry Pi 4 Model B with a 64-bit quad-core Cortex-A72 processor and 8 GB RAM; (2) a 24.05-24.25 GHz I/Q channel microwave radar with an 8-element TX/RX antenna (SHARP, model DC6M4JN3000); (3) a CMOS multi-function analog laser sensor (Keyence, models IL-1000 & IL-S065) with a 2 μm repeatability accuracy; and (4) an Arduino data acquisition board converting I/Q and laser signals to digital at 1092 Hz, 10-bit resolution. Tests were performed on four spontaneously breathing rats under isoflurane anesthesia (2.5% to 1.0% over 32 minutes), measuring respiratory rate variations to evaluate anesthesia depth. 
This dataset includes data files and MATLAB code. The data folder contains four data files: RatA.csv, RatB.csv, RatC.csv, and RatD.csv, which correspond to the raw data from radar and laser measurements. The columns in these files are structured as follows: Column 1: Time; Column 2: Radar I channel; Column 3: Radar Q channel; Column 4: Laser. The MATLAB code (estRespRate_rat.m) scripts can be used for signal visualization and FFT (fast Fourier transform) based respiration rate estimation.
DOI: 10.25386/genetics.6275915.v1
title: Supplemental Material for Keightley and Jackson, 2018

description: Supplementary figures and table.<br>
DOI: 10.6084/m9.figshare.11643408.v1
title: MOESM1 of Molecular characteristics of odorant-binding protein 1 in Anopheles maculipennis

description: Additional file 1: Appendix 1. Nucleotide polymorphism and schematic structure of amplified fragment of Amacobp1 gene in 25 samples of studied populations of An. maculipennis s. s.