cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25219706.v1
title: Supplementary Material for: A Case of Closure of Recurrent Full-Thickness Macular Hole by Spontaneous Retinal Detachment around the Macular Hole and Gas Tamponade

description: <b><i>Introduction:</i></b> Here, we present a case of full-thickness macular hole (FTMH) recurrence following two vitrectomies, accompanied by additional internal limiting membrane (ILM) peeling and gas tamponade. Ultimately, FTMH closure was accomplished by spontaneous retinal detachment around the macular hole and gas tamponade alone. <b><i>Case Presentation:</i></b> The patient, a 54-year-old woman with a lamellar macular hole, had a visual acuity of 20/100 in her left eye. The treatment regimen included cataract surgery, a 25-gauge pars plana vitrectomy involving ILM peeling, application of the lamellar hole epiretinal proliferation embedding technique, and subsequent gas tamponade. Closure of the lamellar macular hole was observed a month post-surgery, improving visual acuity to 20/40. However, FTMH developed 3 months after the initial surgery, resulting in visual acuity decline to 20/100. A 25-gauge pars plana vitrectomy was performed with extensive ILM peeling and 20% sulfur hexafluoride gas tamponade. FTMH closure was noted within 19 days after reoperation, enhancing visual acuity to 20/66. Approximately 1.5 months after reoperation, a pinhole-shaped macular hole was identified, and the patient opted for follow-up observation due to her refusal to undergo additional surgery. As the macular hole gradually enlarged resembling retinal detachment, outpatient fluid-gas exchange with 14% perfluoropropane was performed 3.5 months after reoperation. The FTMH closed within a week post-gas injection and remained closed for more than 1 year. Consequently, visual acuity in the left eye was sustained at 20/50. <b><i>Conclusion:</i></b> We encountered a case that might highlight the significance of releasing subretinal adhesions surrounding a FTMH for successful closure.
DOI: 10.3535/z1y-cx1-qlh
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ze4-zaf-vwt
title: Catenipora

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rm6-8rl-gg3
title: Quartz porphyry

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vbz-ydc-46m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k08-nhc-myb
title: Lava

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/er1-9s9-cvh
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rhs-nym-kfc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/sb7bk3985c
title: GIScience & Remote Sensing

description: Decreasing Trend of Kuroshio Intrusion and its Effect on the Chlorophyll-a Concentration in the Luzon Strait
DOI: 10.3535/30c-zk9-yp1
title: Favositida

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a56-tfn-86z
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9va-kp1-r3f
title: Ctenognathodus murchisoni

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rpm-zke-3xw
title: Conglomerate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/frfftcn6mr
title: Supplemental material Off-label use of methotrexate in dermatological practice: Table S1 – S2

description: Supplementary material 1
Table S1. Characteristics of all included studies
Table S2. Efficacy/effectiveness of all included studies
DOI: 10.3535/58g-w5x-g0s
title: Paleofavosites

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pag-66r-sgt
title: Cyathochitina cf. campanulaeformis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dyw-n9j-egz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y4a-ey2-y5k
title: Suursaar quartz porphyry

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/edt-rfe-2v4
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tec-mjq-9z4
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12326411.v1
title: S7 File.zip

description: 6WKP SWISSDOCK results.
DOI: 10.3535/8ax-fm6-t4t
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q42-vqc-ewk
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gf7-eje-9bp
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hsy-asp-9fa
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bsf-xym-8nd
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rds-enh-kkm
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27220797.v1
title: Datasets for models 1-6 in "Reciprocal signalling during approaches relates to close relationships within and between two primate species" Grampp et al.

description: Datasets used in "Reciprocal signalling during approaches relates to close relationships within and between two primate species". Grampp et al.
DOI: 10.6084/m9.figshare.5498248.v1
title: SchemeC.xls

description: Well efficiency Calculation for Scheme C
DOI: 10.3535/r03-srr-btw
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sd7-kgm-yp3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3879409_d1.v1
title: Additional file 1: of A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinIONâ ˘ nanopore sequencer

description: The result of nested-PCR, LAMP method and MinIONTM sequencing of LAMP amplicons. (XLSX 19Â kb)
DOI: 10.17632/ssgpb4wmh9
title: Non-canonical receptive field properties and neuromodulation of feature detecting neurons in flies
DOI: 10.3535/j81-yqx-2yb
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tam-vn2-9av
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.703928.v2
title: Loss and Recovery of Genetic Diversity in Adapting Populations of HIV

description: Sequences and figures with Pleuni Pennings, Sergey Kryazhimskiy, John Wakeley Loss and Recovery of Genetic Diversity in Adapting Populations of HIV (Submitted on 15 Mar 2013) http://arxiv.org/abs/1303.3666
DOI: 10.3535/r1h-vta-dpx
title: Bioerosional trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vqx-ecl-06s
title: Rhynchonellata Williams, Carlson, Brunton, Holmer & Popov, 1996

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11672022.v1
title: Armin Mujkovic Basics of C# programming Certificate

description: Basics of C# programming Certificate "Autumn Coding School 2019"
DOI: 10.6084/m9.figshare.23301455.v1
title: KM and GWOKM

description: Development of a novel approach: Combine Grey Wolf Optimizer with K-means clustering method called (GWOKM) to optimize the multi-element geochemical models.
DOI: 10.6084/m9.figshare.24447394.v2
title: Single Cell Dataset

description: ControlControl groups tumor were processed into single-cell suspensions when the tumor size of the control group reached 100 mm2. After antibody staining , tumor CD45.2+ cells were sorted on a FACS AriaIII.Ten thousand cells were mixed with 10× Genomics Chromium single-cell RNA mastermix, followed by loading onto a 10× Chromium chip according to the manufacturer’s protocol to obtain single-cell cDNA. Libraries were subsequently prepared and sequenced using a NovaSeq sequencer (Illumina).<br>MK-801Hepa1-6BL (5 × 105) tumor cells were injected subcutaneously (s.c.) into C57BL/6 WT, respectively.Tumor-bearing mice were treated with MK-801 (0.2 mg/kg, i.p. daily from day 5). When the tumor size of the control group reached 100 mm2. After antibody staining , tumor CD45.2+ cells were sorted on a FACS AriaIII. Ten thousand cells were mixed with 10× Genomics Chromium single-cell RNA mastermix, followed by loading onto a 10× Chromium chip according to the manufacturer’s protocol to obtain single-cell cDNA. Libraries were subsequently prepared and sequenced using a NovaSeq sequencer (Illumina).<br>all gene expression.xls （RNA-Seq mouse bone marrow）The bone marrow cells were cultured in complete RPMI 1640 media supplemented with 5% L929 cells supernatant, and 0.1% β-mercaptoethanol for 5 days to generate BMDMs.BMDMs were harvested after 6 h stimulation with MK-801 in the presence of tumor conditioned medium, and total RNA was extracted from the treated cells using TRizol.Total RNA was extracted using Trizol reagent following the manufacturer's procedure. The total RNA quantity and purity were analysis of Bioanalyzer 2100 and RNA 6000 Nano LabChip Kit, high-quality RNA samples with RIN number &gt; 7.0 were used to construct sequencing library.
DOI: 10.6084/m9.figshare.7592951.v1
title: Zeta potential analysis (Fig.S6)

description: Zeta potential analysis as a function of pH
DOI: 10.3535/56m-2e1-fs9
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c9c-xak-7xd
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/fzfrjsz3mv
title: Parameterizing the aerodynamic effect of trees in street canyons for the street-network model MUNICH using the CFD model Code_Saturne - Code_Saturne simulation dataset

description: This repository contains examples of Code_Saturne cases used in the study: Parameterizing the aerodynamic effect of trees in street canyons for the street-network model MUNICH using the CFD model Code_Saturne.
The three folders correspond to the three canyons simulated: a large canyon (LC) of aspect ratio 0.3, an intermediate canyon (IC) of aspect ratio 0.5 and a narrow canyon (NC) of aspect ratio 1.0.
Each folder contains the mesh (mesh_canyon.med), the source codes (cs_user*) and the set-up (setup.xml) used to performed the simulations.
DOI: 10.3535/jvn-as4-dgn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cng-cjm-5l6
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wch-1xz-aex
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25008644.v1
title: Forest Fire

description: This is part of the total data set
DOI: 10.3535/mt6-nvk-bfw
title: †Atrypa Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yfx-dka-kkw
title: †Lissatrypidina Copper, in Copper & Gourvennec, 1996

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7294295.v3
title: FB13nball.zip

description: derived from Freebase13 dataset<br>
DOI: 10.6084/m9.figshare.7510961.v1
title: Bilingual speech production: evaluating linguistic similarity, language switching costs and attentional system

description: Abstract: This article presents a study which aimed at analyzing both linguistic similarity and switching cost effects on the attentional network task and picture-naming task, within the language-switching paradigm. Reaction time and accuracy of responses in these tasks were observed in bilingual Portuguese-English and Portuguese-Spanish participants’ performances. The results did not show any significant differences in the means between the groups. On the other hand, in the within-subjects comparison, statistically significant differences were observed when the participants switched from the L2 to the L1, evidencing an asymmetrical switching cost. Some correlations were also found between the two tasks in the Portuguese-Spanish bilingual group. These results are interpreted as indications of linguistic similarity effects in both naming and attention tasks.
DOI: 10.3535/c94-ymd-73b
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yyj-10z-d4w
title: Dayia J. M. Porter

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/h2fvj7x3vt
title: Supplementary material - individual-based network of Noctilio albiventris and streblid bat fly

description: We provide four files, a txt file, an R script, and two csv files containing results. The txt file contains a matrix of interactions between Streblidae species (Noctiliostrebla morena, N. pantaneira and Paradyschiria parvula) and Noctilio albiventris individuals, captured along two sites of riparian forest in the Southern Pantanal, from 25 February to 3 March 2013. The R script contains a series of commands to run network analysis. The "traits_pca.csv" file contains the results from the pca analysis and the modules resulting from the modularity analysis. The "individual_level_indices.csv" file contains the results from the different species/individual-level indices calculated.
DOI: 10.3535/74k-32b-925
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pvl-3vk-dvc
title: †Pentamerida Schuchert & Cooper, 1931

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25153328.v1
title: beijing_aq-2018.csv

description: 数据正在整理中，我们首先发布了北京的空气污染物数据。
DOI: 10.6084/m9.figshare.28689302
title: Riloff Data

description: Riloff data set is a classical data set for subjective recognition and sentiment analysis, which is often used to train or evaluate the recognition system of subjective sentences in text, especially for unsupervised or weakly supervised information extraction tasks.
DOI: 10.6084/m9.figshare.c.3641837_d1.v1
title: Additional file 4 of GenAp: a distributed SQL interface for genomic data

description: The SAM equivalent of the Additional File 3. (SAM 3 kb)
DOI: 10.17632/cc2hgr9kvh
title: Three-dimensional material microstructures dataset displaying extreme isotropic elastic properties

description: A dataset with .stl files of three-dimensional material microstructures displaying extreme isotropic properties designed using a topology design methodology and crystallographic symmetries.
DOI: 10.17632/t973hzzyd5
title: A tool for pattern information extraction and defect quantification from crystal structures

description: Abstract In this paper, we present a revised version of BilKristal 2.0 tool. We added defect quantification functionality to assess crystalline defects. We improved visualization capabilities by adding transparency support and runtime visibility sorting. Discovered bugs are fixed and small performance optimizations are made. Title of program: BilKristal 3.0 Catalogue Id: ADYU_v3_0 Nature of problem Determining the crystal structure parameters of a material is a very important issue in crystallography. Knowing the crystal structure parameters helps the understanding of the physical behavior of material. For complex structures, particularly for materials which also contain local symmetry as well as global symmetry, obtaining crystal parameters can be very hard. Versions of this program held in the CPC repository in Mendeley Data ADYU_v1_0; BilKristal; 10.1016/j.cpc.2007.01.002 ADYU_v2_0; BilKristal 2.0.; 10.1016/j.cpc.2013.09.020 ADYU_v3_0; BilKristal 3.0; 10.1016/j.cpc.2014.09.017 ADYU_v4_0; BilKristal 4.0; 10.1016/j.cpc.2015.04.013 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/8c4-che-6m0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n16-a6q-lhf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28531124.v1
title: Induction of SOX17 with stimulation of WNT, TGF-beta and FGF signaling drives embryonal carcinomas into the yolk-sac tumor lineage resulting in increased cisplatin resistance

description: Relapsing germ cell tumor (GCT) patients often harbour components of the aggressive subtype yolk-sac tumor (YST), suggesting that YST formation is an escape mechanism under therapy. Nevertheless, the molecular mechanisms inducing YST development from its stem cell-like precursor embryonal carcinoma (EC) are largely unexplored.We demonstrated that induction of the transcription factor SOX17 together with stimulation of WNT, TGF-beta/Activin and FGF signalling drives EC cells to into the YST lineage. Single-cell-RNA-sequencing revealed that this cell fate switch was accompanied by upregulation of the typical YST factors <i>AFP</i>, <i>ANKRD1</i>, <i>APOA1</i>, <i>CST1</i>, <i>FOXA2</i>, <i>GATA6</i> and <i>GPC3</i><i> </i>and microRNAs, while pluripotency-related genes <i>NANOG</i>, <i>POU5F1</i>, and<i>SOX2</i> were downregulated. Chromatin-immunoprecipitation followed by sequencing analysis revealed that SOX17 may act in concert with FOXA2 and GATA factors to initiate YST formation. Xenografting of the YST-like cells into nude mice led to growth of mixed GCT with YST components, confirming that these cells are able to form a YST <i>in vivo</i>. Moreover, expression of cisplatin resistance factors was induced in a subpopulation of YST-like cells, suggesting that formation of a YST is accompanied by acquisition of cisplatin resistance. Indeed, the YST-like cells presented as less sensitive towards cisplatin than their parental cells.Our study deciphered the molecular mechanisms forcing EC to differentiate into the YST lineage, which is accompanied by acquisition of cisplatin resistance, confirming that YST formation is an escape mechanism for GCT under therapy. Thus, GCT patients should be screened for YST elements under therapy to identify patients in risk of developing therapy resistance.
DOI: 10.17632/6hj6t5jgnc
title: Stem cell-derived mesoderm and pancreatic progenitor 3D culture mimics mouse embryonic pancreas and its endocrine compartment

description: The developing mouse pancreas is surrounded by mesoderm compartments providing signals that induce pancreas formation. Most pancreatic organoid protocols lack this mesoderm niche and only partially capture the pancreatic cell repertoire. This work aimed to generate pancreatic aggregates by differentiating mouse embryonic stem cells (mESCs) into mesoderm progenitors (MPS) and pancreas progenitors (PPs), without using extracellular matrix substitutes. First, mESCs were differentiated into epiblast stem cells (EpiSCs) to enhance the PP differentiation rate. Next, PPs and MPs aggregated together giving rise to various pancreatic cell types, including endocrine, acinar, and ductal cells, and to endothelial cells. Single-cell RNA sequencing analysis revealed a larger endocrine population within the PP+MP aggregates, as compared to PPs alone or PPs in Matrigel aggregates. The PP+MP aggregate gene expression signatures and its endocrine population percentage closely resembled those of the endocrine population found in the mouse embryonic pancreas, which holds promise for studying pancreas development.
DOI: 10.25377/sussex.7614197.v1
title: External objects and computer code abstractions

description: —Digital Appendix / Documentation of the PhD Study: IM-Medea: Posthumanism and Remediation in Music Theatre.—<br>This is a collection of external Max/MSP objects and code abstractions that are used in many of the experiments of this PhD study. They will have to be installed separately from the experiment-specific computer code that can be found in each one of the 9 experiments.
DOI: 10.3535/ewt-wbj-cdw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23284967.v1
title: Data for AMA vs KMD (time from injection to sedation endpoints, adverse events, propofol doses, weights, injection volumes

description: Raw data sheet for "Comparison of sedation endpoints and propofol requirements in two sedation protocols in pigs: non-analgesic versus analgesic" that includes all data analyzed in manuscript
DOI: 10.3535/174-y7h-e9a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sj7-9we-fxe
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11604201.v3
title: Quantitation of human and murine Fc gamma receptors

description: Here, data sets on human or murine Fc gamma receptor expression in steady state are provided . <br>They refer to the manuscript <i>"There is (Scientific) Strength in Numbers: A Comprehensive Quantitation of Fc Gamma Receptor Numbers on Human and Murine Peripheral Blood Leukocytes"</i> by Kerntke, Nimmerjahn and Biburger. <br>(Frontiers in Immunology)<br><br>(in 10/2021 some data points for murine FcgRIIb were restored which had been lacking in version1)
DOI: 10.3535/56l-9lc-asv
title: †Isorthis Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t3e-qr0-dah
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bqn-b1b-fgh
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t50-vbd-xq1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3567555.v1
title: Appendix C. Supplemental information on tree-ring reconstruction of pre-outbreak basal area and outbreak severity.

description: Supplemental information on tree-ring reconstruction of pre-outbreak basal area and outbreak severity.
DOI: 10.3535/e4h-x4v-vc3
title: †Glassia Davidson, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xzk-1bd-vb2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21304830.v1
title: Table 1

description: Demographic characteristics of study subjects