cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11336168.v4
title: Diverse mobilome of Dichotomius (Luederwaldtinia) schiffleri (Coleoptera: Scarabaeidae) reveals long range horizontal transfer events of DNA transposons

description: Transposable elements (TEs) are mobile DNA sequences that are able to move from one genomic location to another. These selfish elements are known as genomic parasites, since they hijack the host molecular machinery to generate new copies of themselves. The mobilization of TEs can be seem as a natural mutagen because new TE copies can insert into different loci and impact host genomic structure through different mechanisms. Although our knowledge about TEs is improving with new genomes available, there is still very limited data about the mobilome of species from the Coleoptera order, the most specious order of insects, including species from the Scarabeidae family. Therefore, the main goal of this study was to characterize the mobilome of D. (Luederwaldtinia) schiffleri, based on low coverage genome sequencing, and reconstruct their evolutionary history. We used a combination of four different approaches for TEs characterization and maximum likelihood phylogenetic analysis to study their evolution. We found a large and diverse mobilome composed of 43 TE superfamilies, 22 DNA transposon and 21 Retrotransposons, accounting for 21% of the genome. Moreover, we found a number of incongruence between the TE and host phylogenetic trees in three DNA transposon TE superfamilies, which represents 5 TE families, suggesting possible horizontal transfer events between highly divergent taxa. In summary, we found an abundant and diverse mobilome and a number of horizontal transfer events that has shaped the evolutionary history of this species.<br>
DOI: 10.17637/rh.11336075
title: Kew Museum of Economic Botany: Distribution Events, 1847-1990

description: This spreadsheet contains all recorded data on distributions or dispersals of specimens and artefacts from the Kew Museum of Economic Botany between 1847 and 1900, arranged by 'event', ie single records documenting a donation (usually with a specific date) which may include multiple items. (A second spreadsheet on Figshare, arranged by item, includes further details of individual objects and sources). The data is based on information within Kew's 'Specimens Distributed' books for the period 1881-1990, supplemented by archival data from a variety of other sources at Kew and elsewhere. The file includes data on the date of the distribution event, recipient name, institution, location and number of objects, together with links where appropriate to the relevant page of the Specimens Distributed books or Schools Letter books which have been digitised and are available on the Biodiversity Heritage Library website. <br> <br>https://www.royalholloway.ac.uk/mobilemuseum <br>https://www.kew.org/science/collections/economic-botany-collection <br><br>
DOI: 10.17637/rh.11336084.v1
title: Kew Museum of Economic Botany: Items Distributed, 1847-1990

description: This spreadsheet contains all recorded data on distributions or dispersals of specimens and artefacts from the Kew Museum of Economic Botany between 1847 and 1900, arranged by 'item', ie distinguishing each documented object whether distributed individually or as part of a group of objects donated in the same 'event'. (A separate spreadsheet on Figshare, arranged by distribution event, includes further details of recipient name, institution and location). The data is based on information within Kew's 'Specimens Distributed' books for the period 1881-1990, supplemented by archival data from a variety of other sources at Kew and elsewhere. The file includes information on the date of the distribution, event record, description and type of object, place and region of origin, donor name if available and archival source, together with links where appropriate to the relevant page of the Specimens Distributed books which have been digitised and are available on the Biodiversity Heritage Library website. <br> <br>https://www.royalholloway.ac.uk/mobilemuseum <br>https://www.kew.org/science/collections/economic-botany-collection <br><br><br>
DOI: 10.6084/m9.figshare.11336045
title: Group2 Male direct involvement.doc

description: Focus group 4
DOI: 10.6084/m9.figshare.11336042
title: Group1 Male involved through children.doc

description: Focus group 3
DOI: 10.6084/m9.figshare.11336168.v3
title: Diverse mobilome of Dichotomius (Luederwaldtinia) schiffleri (Coleoptera: Scarabaeidae) reveals long range horizontal transfer events of DNA transposons

description: Transposable elements (TEs) are mobile DNA sequences that are able to move from one genomic location to another. These selfish elements are known as genomic parasites, since they hijack the host molecular machinery to generate new copies of themselves. The mobilization of TEs can be seem as a natural mutagen because new TE copies can insert into different loci and impact host genomic structure through different mechanisms. Although our knowledge about TEs is improving with new genomes available, there is still very limited data about the mobilome of species from the Coleoptera order, the most specious order of insects, including species from the Scarabeidae family. Therefore, the main goal of this study was to characterize the mobilome of D. (Luederwaldtinia) schiffleri, based on low coverage genome sequencing, and reconstruct their evolutionary history. We used a combination of four different approaches for TEs characterization and maximum likelihood phylogenetic analysis to study their evolution. We found a large and diverse mobilome composed of 43 TE superfamilies, 22 DNA transposon and 21 Retrotransposons, accounting for 21% of the genome. Moreover, we found a number of incongruence between the TE and host phylogenetic trees in three DNA transposon TE superfamilies, which represents 5 TE families, suggesting possible horizontal transfer events between highly divergent taxa. In summary, we found an abundant and diverse mobilome and a number of horizontal transfer events that has shaped the evolutionary history of this species.<br>
DOI: 10.6084/m9.figshare.11336033
title: Female Group 2 direct involvement.doc

description: Focus Group 1
DOI: 10.6084/m9.figshare.11336036
title: Female Group1 involved through children.doc

description: Focus group 2
DOI: 10.6084/m9.figshare.11336036.v1
title: Female Group1 involved through children.doc

description: Focus group 2
DOI: 10.6084/m9.figshare.11336033.v1
title: Female Group 2 direct involvement.doc

description: Focus Group 1
DOI: 10.6084/m9.figshare.11335814
title: Museum Specimens included in study from Integrating phylogeography and high-resolution X-ray CT reveals five new cryptic species and multiple hybrid zones among Australian earless dragons

description: Cryptic lineages, comprising species complexes with deep genetic structuring across the landscape but without distinct morphological differences, impose substantial difficulties for systematists and taxonomists in determining true species diversity. Here, we present an integrative approach that combines data from phylogeography and geometric morphometric analyses of three-dimensional cranial models to revisit the uncertain taxonomy of earless dragons from southern and central Australia that at one time or another have been included under the name <i>Tympanocryptis lineata</i>. Our approach finds strong support for seven previously described species, and more importantly, five undescribed <i>Tympanocryptis</i> taxa for which we provide a taxonomic treatment. We also find evidence of introgression and hybridization in three discrete contact zones between lineages, supported by mitochondrial and nuclear genes, as well as morphological analyses. With a sampling design that includes at least five individuals for each genetic lineage with corresponding X-ray microcomputed tomography scans, we perform comparative evolutionary analyses to show that there is a significant phylogenetic signal in <i>Tympanocryptis</i> cranial shape. Our results demonstrate the importance of using multiple specimens in each genetic lineage, particularly in cases of potential hybridization, and that geometric morphometrics, when used in an integrative framework, is a powerful tool in species delimitation across cryptic lineages. Our results lay the groundwork for future evolutionary studies in this widespread group across multiple environmental types and identify several species of immediate conservation concern with a focus on <i>T. petersi sp. nov.</i> We suggest that this species has undergone significant population declines and warrants a full conservation assessment.
DOI: 10.6084/m9.figshare.11335808
title: Museum Specimens included in study from Integrating phylogeography and high-resolution X-ray CT reveals five new cryptic species and multiple hybrid zones among Australian earless dragons

description: Cryptic lineages, comprising species complexes with deep genetic structuring across the landscape but without distinct morphological differences, impose substantial difficulties for systematists and taxonomists in determining true species diversity. Here, we present an integrative approach that combines data from phylogeography and geometric morphometric analyses of three-dimensional cranial models to revisit the uncertain taxonomy of earless dragons from southern and central Australia that at one time or another have been included under the name <i>Tympanocryptis lineata</i>. Our approach finds strong support for seven previously described species, and more importantly, five undescribed <i>Tympanocryptis</i> taxa for which we provide a taxonomic treatment. We also find evidence of introgression and hybridization in three discrete contact zones between lineages, supported by mitochondrial and nuclear genes, as well as morphological analyses. With a sampling design that includes at least five individuals for each genetic lineage with corresponding X-ray microcomputed tomography scans, we perform comparative evolutionary analyses to show that there is a significant phylogenetic signal in <i>Tympanocryptis</i> cranial shape. Our results demonstrate the importance of using multiple specimens in each genetic lineage, particularly in cases of potential hybridization, and that geometric morphometrics, when used in an integrative framework, is a powerful tool in species delimitation across cryptic lineages. Our results lay the groundwork for future evolutionary studies in this widespread group across multiple environmental types and identify several species of immediate conservation concern with a focus on <i>T. petersi sp. nov.</i> We suggest that this species has undergone significant population declines and warrants a full conservation assessment.
DOI: 10.6084/m9.figshare.11335808.v1
title: Museum Specimens included in study from Integrating phylogeography and high-resolution X-ray CT reveals five new cryptic species and multiple hybrid zones among Australian earless dragons

description: Cryptic lineages, comprising species complexes with deep genetic structuring across the landscape but without distinct morphological differences, impose substantial difficulties for systematists and taxonomists in determining true species diversity. Here, we present an integrative approach that combines data from phylogeography and geometric morphometric analyses of three-dimensional cranial models to revisit the uncertain taxonomy of earless dragons from southern and central Australia that at one time or another have been included under the name <i>Tympanocryptis lineata</i>. Our approach finds strong support for seven previously described species, and more importantly, five undescribed <i>Tympanocryptis</i> taxa for which we provide a taxonomic treatment. We also find evidence of introgression and hybridization in three discrete contact zones between lineages, supported by mitochondrial and nuclear genes, as well as morphological analyses. With a sampling design that includes at least five individuals for each genetic lineage with corresponding X-ray microcomputed tomography scans, we perform comparative evolutionary analyses to show that there is a significant phylogenetic signal in <i>Tympanocryptis</i> cranial shape. Our results demonstrate the importance of using multiple specimens in each genetic lineage, particularly in cases of potential hybridization, and that geometric morphometrics, when used in an integrative framework, is a powerful tool in species delimitation across cryptic lineages. Our results lay the groundwork for future evolutionary studies in this widespread group across multiple environmental types and identify several species of immediate conservation concern with a focus on <i>T. petersi sp. nov.</i> We suggest that this species has undergone significant population declines and warrants a full conservation assessment.
DOI: 10.6084/m9.figshare.11335814.v1
title: Museum Specimens included in study from Integrating phylogeography and high-resolution X-ray CT reveals five new cryptic species and multiple hybrid zones among Australian earless dragons

description: Cryptic lineages, comprising species complexes with deep genetic structuring across the landscape but without distinct morphological differences, impose substantial difficulties for systematists and taxonomists in determining true species diversity. Here, we present an integrative approach that combines data from phylogeography and geometric morphometric analyses of three-dimensional cranial models to revisit the uncertain taxonomy of earless dragons from southern and central Australia that at one time or another have been included under the name <i>Tympanocryptis lineata</i>. Our approach finds strong support for seven previously described species, and more importantly, five undescribed <i>Tympanocryptis</i> taxa for which we provide a taxonomic treatment. We also find evidence of introgression and hybridization in three discrete contact zones between lineages, supported by mitochondrial and nuclear genes, as well as morphological analyses. With a sampling design that includes at least five individuals for each genetic lineage with corresponding X-ray microcomputed tomography scans, we perform comparative evolutionary analyses to show that there is a significant phylogenetic signal in <i>Tympanocryptis</i> cranial shape. Our results demonstrate the importance of using multiple specimens in each genetic lineage, particularly in cases of potential hybridization, and that geometric morphometrics, when used in an integrative framework, is a powerful tool in species delimitation across cryptic lineages. Our results lay the groundwork for future evolutionary studies in this widespread group across multiple environmental types and identify several species of immediate conservation concern with a focus on <i>T. petersi sp. nov.</i> We suggest that this species has undergone significant population declines and warrants a full conservation assessment.
DOI: 10.6084/m9.figshare.11335775
title: Supplementary Data from Micro-structured medium with large isotropic negative thermal expansion

description: Finite element simulations and analytical derivation of the effective coefficient of thermal expansion.
DOI: 10.6084/m9.figshare.11335727
title: Corkwing South unfiltered

description: Empirical dataset of the homogenous corkwing wrasse population
DOI: 10.6084/m9.figshare.11335775.v1
title: Supplementary Data from Micro-structured medium with large isotropic negative thermal expansion

description: Finite element simulations and analytical derivation of the effective coefficient of thermal expansion.
DOI: 10.6084/m9.figshare.11335727.v1
title: Corkwing South unfiltered

description: Empirical dataset of the homogenous corkwing wrasse population
DOI: 10.6084/m9.figshare.11335655
title: Supplementary Material for: Massive Gastrointestinal Bleeding from a Jejunal Dieulafoy Lesion: An Extraordinary Presentation

description: We present an atypical and rare case of a previously healthy 27-year-old male who presented with acute onset of abdominal pain, bloody diarrhea, and syncope. At the Emergency Department, vital signs were stable with no signs of shock. Physical examination revealed diffuse tenderness of the abdomen and cherry red blood was noted upon rectal examination. Blood tests showed marked leukocytosis without anemia. Sigmoidoscopy was performed which revealed hematochezia with no obvious site of bleeding. The patient was admitted to the hospital with a working diagnosis of dysentery and received supportive care. During the following days, blood tests revealed an ongoing decline of hemoglobin levels which necessitated a new workup of gastrointestinal bleeding. Investigation modalities including upper and lower endoscopies as well as angiography failed to demonstrate a bleeding site. Scintigraphy, which was performed next, demonstrated an increased radiotracer activity in the right abdomen consistent with small bowel bleeding. Following these results, the patient underwent urgent laparotomy and surgical resection was performed. The histopathological findings were consistent with a Dieulafoy lesion. This case illustrates the importance of the complementary role of various modalities in locating the bleeding site along the gastrointestinal tract.
DOI: 10.6084/m9.figshare.11335658
title: Chytridiomycota fungi distribution and co-occurerence with diatoms in the Arctic Ocean is correlated with sea ice melt

description: Datasets of main figures in manuscript including Excel and sequence files.<br>
DOI: 10.6084/m9.figshare.11335655.v1
title: Supplementary Material for: Massive Gastrointestinal Bleeding from a Jejunal Dieulafoy Lesion: An Extraordinary Presentation

description: We present an atypical and rare case of a previously healthy 27-year-old male who presented with acute onset of abdominal pain, bloody diarrhea, and syncope. At the Emergency Department, vital signs were stable with no signs of shock. Physical examination revealed diffuse tenderness of the abdomen and cherry red blood was noted upon rectal examination. Blood tests showed marked leukocytosis without anemia. Sigmoidoscopy was performed which revealed hematochezia with no obvious site of bleeding. The patient was admitted to the hospital with a working diagnosis of dysentery and received supportive care. During the following days, blood tests revealed an ongoing decline of hemoglobin levels which necessitated a new workup of gastrointestinal bleeding. Investigation modalities including upper and lower endoscopies as well as angiography failed to demonstrate a bleeding site. Scintigraphy, which was performed next, demonstrated an increased radiotracer activity in the right abdomen consistent with small bowel bleeding. Following these results, the patient underwent urgent laparotomy and surgical resection was performed. The histopathological findings were consistent with a Dieulafoy lesion. This case illustrates the importance of the complementary role of various modalities in locating the bleeding site along the gastrointestinal tract.
DOI: 10.6084/m9.figshare.11331395
title: Supplementary Material for: Impact of Cardio-Renal-Metabolic Comorbidities on Cardiovascular Outcomes and Mortality in Type 2 Diabetes Mellitus

description: <b><i>Background:</i></b> We evaluated the incremental contribution of chronic kidney disease (CKD) to the risk of major adverse cardiovascular (CV) events (MACE), heart failure (HF), and all-cause mortality (ACM) in type 2 diabetes mellitus (T2DM) patients and its importance relative to the presence of other cardio-renal-metabolic (CaReMe) comorbidities. <b><i>Methods:</i></b> Patients (≥40 years) were identified at the time of T2DM diagnosis from US (Humedica/Optum) and UK (Clinical Practice Research Datalink) databases. Patients were monitored post-diagnosis for modified MACE (myocardial infarction, stroke, ACM), HF, and ACM. Adjusted hazard ratios were obtained using Cox proportional-hazards regression to evaluate the relative risk of modified MACE, HF, and ACM due to CKD. Patients were stratified by the presence or absence of atherosclerotic CV disease (ASCVD) and age. <b><i>Results:</i></b> Between 2011 and 2015, of 227,224 patients identified with incident T2DM, 40,063 (17.64%) had CKD. Regardless of prior ASCVD, CKD was associated with higher risk of modified MACE, HF, and ACM; this excess hazard was more pronounced in older patients with prior ASCVD. In time-to-event analyses in the overall cohort, patients with T2DM + CKD or T2DM + CKD + hypertension + hyperlipidemia had increased risks for modified MACE, HF, and ACM versus patients with T2DM and no CaReMe comorbidities. Patients with CKD had higher risks for and shorter times to modified MACE, HF, and ACM than those without CKD. <b><i>Conclusion:</i></b> In T2DM patients, CKD presence was associated with higher risk of modified MACE, HF, and ACM. This may have risk-stratification implications for T2DM patients based on background CKD and highlights the potential importance of novel renoprotective strategies.
DOI: 10.6084/m9.figshare.11335472
title: Microbial binning of Almeida et al dataset using VAMB, p4

description: Part four of VAMB binning on Almeida et al benchmark dataset<br>
DOI: 10.6084/m9.figshare.11335472.v1
title: Microbial binning of Almeida et al dataset using VAMB, p4

description: Part four of VAMB binning on Almeida et al benchmark dataset<br>
DOI: 10.6084/m9.figshare.11330645
title: Educing AI-Thinking in Global Sustainability Development Education: Dataset

description: Dataset of sustainability indicators from 180 countries
DOI: 10.6084/m9.figshare.11330402
title: Fault diagnosis of the train communication network based on multi hop edge approaching method and weighted support vector machine

description: Datasets including: MVB waveform feature datasets; 15 UCI datasets from the University of California at Irvine(UCI) machine learning repository; 2 artificial synthetic datasets
DOI: 10.6084/m9.figshare.11330564.v2
title: Doc2Vec Classifier Model

description: Acknowledgements classification model
DOI: 10.6084/m9.figshare.11330564
title: Doc2Vec Classifier Model

description: Acknowledgements classification model
DOI: 10.6084/m9.figshare.11330054
title: MOESM2 of The relationship between social capital and self-rated health: a multilevel analysis based on a poverty alleviation program in the Philippines

description: Additional file 2. Multilevel mixed-effects linear regression testing the impact of social capital on self-rated health, post-Transform. Supplementary table showing model building with social capital interaction terms
DOI: 10.6084/m9.figshare.11330054.v1
title: MOESM2 of The relationship between social capital and self-rated health: a multilevel analysis based on a poverty alleviation program in the Philippines

description: Additional file 2. Multilevel mixed-effects linear regression testing the impact of social capital on self-rated health, post-Transform. Supplementary table showing model building with social capital interaction terms
DOI: 10.6084/m9.figshare.11330030
title: MOESM9 of Evolutionarily novel genes are expressed in transgenic fish tumors and their orthologs are involved in development of progressive traits in humans

description: Additional file 9. GO annotation with all evidence codes for 870 fish genes from the sample.
DOI: 10.6084/m9.figshare.11330033
title: MOESM8 of Transcriptomic and proteomic analysis reveals mechanisms of low pollen-pistil compatibility during water lily cross breeding

description: Additional file 8. Detailed protein quantitative information and significant difference analysis results.
DOI: 10.6084/m9.figshare.11330030.v1
title: MOESM9 of Evolutionarily novel genes are expressed in transgenic fish tumors and their orthologs are involved in development of progressive traits in humans

description: Additional file 9. GO annotation with all evidence codes for 870 fish genes from the sample.
DOI: 10.6084/m9.figshare.11330021
title: MOESM6 of Transcriptomic and proteomic analysis reveals mechanisms of low pollen-pistil compatibility during water lily cross breeding

description: Additional file 6. GO enrichment analysis of the cor-DEGs-DEPs genes.