cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27088576
title: <b>Isolation and characterization of a recombinant porcine epidemic diarrhea virus S-INDEL strain in China</b>

description: Porcine epidemic diarrhea virus (PEDV) is a contagious enteric coronavirus that causes severe diarrhea and dehydration in pigs, with mortality rates reaching up to 100% in piglets. In 2024, the novel S-INDEL PEDV strain (PEDV_CHJSHA2024) was isolated from the intestines of piglets on a pig farm in China. The recombination analysis indicated that the S gene of this strain underwent recombination, resulting from the integration of sequences from the Ch/HNLH/2015 strain and the SQ2014 strain. Compared with strain OH851, this strain exhibited amino acid substitutions and insertions in the S1 region, along with a loss of the N-glycosylation site at amino acid position 114. The pathogenicity of the S-INDEL strain remains controversial. The PEDV_CHJSHA2024 strain was evaluated in pigs of different ages and antibody levels, revealing 100% mortality in 1-day-old neonatal piglets, 50% mortality in 3-day-old piglets without maternal antibodies, and no mortality in 3-day-old piglets with maternal antibodies, with differences in clinical signs of infection. It induces severe diarrhea and reduced feeding in 4-week-old piglets and gilts but is not fatal. High levels of serum IgA antibodies were observed for at least two months post-infection. These findings provide valuable insights into coronavirus recombination and evolution, supporting further investigations into the molecular pathogenesis of S-INDEL strains.
DOI: 10.6084/m9.figshare.27088576.v1
title: <b>Isolation and characterization of a recombinant porcine epidemic diarrhea virus S-INDEL strain in China</b>

description: Porcine epidemic diarrhea virus (PEDV) is a contagious enteric coronavirus that causes severe diarrhea and dehydration in pigs, with mortality rates reaching up to 100% in piglets. In 2024, the novel S-INDEL PEDV strain (PEDV_CHJSHA2024) was isolated from the intestines of piglets on a pig farm in China. The recombination analysis indicated that the S gene of this strain underwent recombination, resulting from the integration of sequences from the Ch/HNLH/2015 strain and the SQ2014 strain. Compared with strain OH851, this strain exhibited amino acid substitutions and insertions in the S1 region, along with a loss of the N-glycosylation site at amino acid position 114. The pathogenicity of the S-INDEL strain remains controversial. The PEDV_CHJSHA2024 strain was evaluated in pigs of different ages and antibody levels, revealing 100% mortality in 1-day-old neonatal piglets, 50% mortality in 3-day-old piglets without maternal antibodies, and no mortality in 3-day-old piglets with maternal antibodies, with differences in clinical signs of infection. It induces severe diarrhea and reduced feeding in 4-week-old piglets and gilts but is not fatal. High levels of serum IgA antibodies were observed for at least two months post-infection. These findings provide valuable insights into coronavirus recombination and evolution, supporting further investigations into the molecular pathogenesis of S-INDEL strains.
DOI: 10.6084/m9.figshare.26823742
title: G protein coupled receptor transcripts in human immune cells and platelets database

description: G-protein coupled receptors (GPCRs) are encoded by nonabundant mRNAs, and it is difficult to detect them reliably with the highly parallel methods that are in general use. Because of this, we developed and validated a sensitive, specific, semi-quantitative method for detecting these transcripts. We have used the method to profile GPCR transcripts in white blood cells (WBCs)--B, CD4, CD8, NK, and dendritic cells; monocytes, and macrophage-like monocytes treated with granulocyte-macrophage colony-stimulating factor--as well as platelets.
On average, the white cells studied expressed 160 receptor mRNAs (range, 123-206). Platelets made 69. Some, but far from all, of the receptors we found have been detected earlier. We believe our data should stimulate studies of receptor function and contribute to drug development.
DOI: 10.6084/m9.figshare.26823742.v1
title: G protein coupled receptor transcripts in human immune cells and platelets database

description: G-protein coupled receptors (GPCRs) are encoded by nonabundant mRNAs, and it is difficult to detect them reliably with the highly parallel methods that are in general use. Because of this, we developed and validated a sensitive, specific, semi-quantitative method for detecting these transcripts. We have used the method to profile GPCR transcripts in white blood cells (WBCs)--B, CD4, CD8, NK, and dendritic cells; monocytes, and macrophage-like monocytes treated with granulocyte-macrophage colony-stimulating factor--as well as platelets.
On average, the white cells studied expressed 160 receptor mRNAs (range, 123-206). Platelets made 69. Some, but far from all, of the receptors we found have been detected earlier. We believe our data should stimulate studies of receptor function and contribute to drug development.
DOI: 10.15468/dl.mjwz7f
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Guatteria dura R.E.Fr."
 ]
}

 The dataset includes 68 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026935-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdbepz
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "NetworkKey is 3aee7756-565e-4dc5-b22c-f997fbd7105c",
 {
 "and" : [
 "Year 1800-2024",
 "Country is one of (Germany)",
 "TaxonKey is one of (Barbarea vulgaris (L.) W.T.Aiton)"
 ]
 }
 ]
}

 The dataset includes 60 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026936-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5x921w76
title: MassIVE MSV000095930 - GCMS Extract Streptomyces sp. PT6 Elicitor 1
title: aper title:Biological Activities and Molecular Networking of Marine Sediment Streptomyces sp. PT6 Extracts Cultivated with Different Elicitors Author list: Rizky, Risa Nofiani*, Rudiyansyah, Muhamad Hanapi, Muhamad Arif Afrizal, Dina Ulayaa Aqilatun Najla, Des Saputro Wibowo, Agus Sukito, Fitri Setyoningrum
DOI: 10.15468/dl.ctd2dv
title: Occurrence Download

description: A dataset containing 1171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "Geometry POLYGON((-75.34375 5.08128,-75.32106 5.10238,-75.33619 5.14758,-75.43754 5.1521,-75.58578 5.14306,-75.5888 5.10087,-75.67503 5.12347,-75.68561 5.08279,-75.60998 5.06019,-75.61603 5.02855,-75.59334 4.97882,-75.52527 5.00444,-75.53737 5.03307,-75.51468 5.05718,-75.49048 5.03759,-75.38006 5.02553,-75.36191 5.01046,-75.33165 5.02252,-75.3377 5.0406,-75.35132 5.05567,-75.34375 5.08128))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 1171 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026941-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnpfww
title: Occurrence Download

description: A dataset containing 15835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Melastoma malabathricum L."
 ]
}

 The dataset includes 15835 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026940-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13749411
title: A Bayesian framework to infer and cluster mutational signatures leveraging prior biological knowledge

description: In the preprint available at https://doi.org/10.1101/2024.09.16.613266 we present BASCULE, a new method to perform Bayesian signatures deconvolution and to cluster patients from the inferred exposures. The method can deconvolve any kind of mutational signature types (SBS, DBS, ID, etc.) including as input a reference catalogue of known signatures (i.e., COSMIC), and cluster the samples joinltly from the exposures of all signature types. BASCULE is available as an R package (https://github.com/caravagnalab/bascule.git). Here we release the data and code to reproduce the analysis on synthetic and real datasets presented in the preprint, in the "synthetic_data_validation.tar.gz" and "real_data_validation.tar.gz", respectively.
DOI: 10.15468/dl.27qxzd
title: Occurrence Download

description: A dataset containing 19755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "TaxonKey is Papaveraceae"
 ]
}

 The dataset includes 19755 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026942-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uev6rr
title: Occurrence Download

description: A dataset containing 6070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "Geometry POLYGON((-78.56245 33.8943,-78.91347 34.29062,-79.71917 34.81739,-81.0035 35.10907,-82.32787 35.25912,-83.08496 35.02495,-83.34705 34.70267,-82.93738 34.43781,-82.63532 33.90617,-82.1384 33.5699,-81.91263 33.23395,-81.34765 32.56544,-80.91119 31.99536,-80.48111 32.33678,-80.13144 32.60842,-79.98379 32.56268,-79.80072 32.75743,-79.65772 32.78853,-79.61031 32.88972,-79.43973 32.95551,-79.19383 33.16739,-79.0458 33.40066,-78.88759 33.47338,-78.56245 33.8943))",
 "OccurrenceStatus is Present",
 "StateProvince is one of (South Carolina, South Carolina (State))",
 "TaxonKey is Perciformes"
 ]
}

 The dataset includes 6070 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026944-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hn845q
title: Occurrence Download

description: A dataset containing 2914177609 species occurrences available in GBIF matching the query:
{
 "Year" : [
 "is greater than or equal to 1249"
 ]
}

 The dataset includes 2914177609 records from 68760 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026481-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e209282
title: The Synergy of Support and Self-Efficacy: How Ambidextrous Leadership Drives Innovation among Knowledge Workers in China

description: This study employed a random sampling method to distribute 400 online questionnaires to knowledge workers across over 100 cities in China via CREDAMO between January and June 2024, achieving a remarkable response rate of 96% with 385 questionnaires returned. After screening to exclude 28 questionnaires with response times below the average, 372 valid data points remained, representing 93% of the original sample. Among the participants, 26.6% identified as male and 73.4% as female; the age distribution was 23.9% aged 21-30, 66.7% aged 31-40, 5.9% aged 41-50, and 3.5% aged 51-60. Most respondents (92.7%) held a master's degree, while 7.3% held a doctoral degree. By employment sector, 6% worked in state-owned enterprises, 8.9% in institutions, 5.9% in civil service, 56.5% in private enterprises, and 9.1% in foreign-funded companies. In terms of job positions, 24.5% were ordinary employees, 17.7% in grassroots management, 34.9% in middle management, and 22.8% in top management
DOI: 10.3886/e209282v1
title: The Synergy of Support and Self-Efficacy: How Ambidextrous Leadership Drives Innovation among Knowledge Workers in China

description: This study employed a random sampling method to distribute 400 online questionnaires to knowledge workers across over 100 cities in China via CREDAMO between January and June 2024, achieving a remarkable response rate of 96% with 385 questionnaires returned. After screening to exclude 28 questionnaires with response times below the average, 372 valid data points remained, representing 93% of the original sample. Among the participants, 26.6% identified as male and 73.4% as female; the age distribution was 23.9% aged 21-30, 66.7% aged 31-40, 5.9% aged 41-50, and 3.5% aged 51-60. Most respondents (92.7%) held a master's degree, while 7.3% held a doctoral degree. By employment sector, 6% worked in state-owned enterprises, 8.9% in institutions, 5.9% in civil service, 56.5% in private enterprises, and 9.1% in foreign-funded companies. In terms of job positions, 24.5% were ordinary employees, 17.7% in grassroots management, 34.9% in middle management, and 22.8% in top management
DOI: 10.15468/dl.jzghb8
title: Occurrence Download

description: A dataset containing 5217 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scaptotrigona pectoralis (Dalla Torre, 1896)"
 ]
}

 The dataset includes 5217 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026949-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt3ed3
title: Occurrence Download

description: A dataset containing 2539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.93595 45.10946,-76.77497 43.7033,-79.19523 43.7033,-79.84063 42.47793,-77.0654 41.61525,-74.16109 40.22545,-71.25678 41.05798,-73.64477 41.39776,-73.12845 45.08668,-75.93595 45.10946))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is New York",
 "TaxonKey is one of (Ephemeroptera, Trichoptera)"
 ]
}

 The dataset includes 2539 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026948-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hs5gfs
title: Occurrence Download

description: A dataset containing 12076 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoreo de Fauna Silvestre en el Municipio de Envigado"
 ]
}

 The dataset includes 12076 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026947-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6tt2n
title: Occurrence Download

description: A dataset containing 3510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada)",
 "DatasetKey is one of (INSDC Host Organism Sequences, INSDC Sequences, iNaturalist Research-grade Observations)",
 "TaxonKey is Lyssavirus rabies"
 ]
}

 The dataset includes 3510 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026950-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13829768
title: Comparing greenhouse and field biocrust cultivation methods in the Sonoran Desert

description: Summary

1.     Developing methods to use biocrusts in restoration is becoming more important as land use and climate change impact the health and intactness of high-stress ecosystems. Methods of cultivation to maximize production of biocrusts for use in restoration activities is necessary because salvage opportunities are limited. Our objective for this research was to determine an optimal method for scalable biocrust cultivation. 

2.     We tested two Field and one Greenhouse cultivation methods. The Field cultivation methods had a base layer of weed cloth, soil, and irrigation with either 1) shade cloth immediately over the surface (Quesadilla method), or 2) with shade cloth over a 1m tall hoophouse (Hoophouse method). The Greenhouse method had nested basins with water wicking up to the soil surface and biocrust from below, with shade cloth attached to basins. We crossed these methods with the addition of native soil or sand and with and without a base of jute using salvaged biocrusts from the Sonoran Desert. 

3.     All methods led to at least doubling biocrust cover in 11 weeks. The Greenhouse method led to the highest cover of cyanobacteria and mosses, whereas the field Quesadilla method and the addition of native soil in all cultivation methods led to higher abundance of lichens. There were interactions of cultivation method and soil type, with Greenhouse cultivation and native soil promoting the highest cyanobacteria cover and chlorophyll a. We measured exopolysaccharide sheaths (EPS) in native soil and all cultivation conditions, finding no differences for tightly bound sheath fractions, but higher quantities of the loosely bound EPS in the Greenhouse. We also quantified native and non-native plants in cultivation, finding few plants in Greenhouse cultivation, but high abundance in both Field methods, and particularly with native soil and without jute for native plants. 

4.     Synthesis and applications: Together, these results demonstrate that all three cultivation methods are successful for bulking biocrust materials for restoration, and preference should be given to the method that is the easiest and most accessible for practitioners.
DOI: 10.5281/zenodo.13829769
title: Comparing greenhouse and field biocrust cultivation methods in the Sonoran Desert

description: Summary

1.     Developing methods to use biocrusts in restoration is becoming more important as land use and climate change impact the health and intactness of high-stress ecosystems. Methods of cultivation to maximize production of biocrusts for use in restoration activities is necessary because salvage opportunities are limited. Our objective for this research was to determine an optimal method for scalable biocrust cultivation. 

2.     We tested two Field and one Greenhouse cultivation methods. The Field cultivation methods had a base layer of weed cloth, soil, and irrigation with either 1) shade cloth immediately over the surface (Quesadilla method), or 2) with shade cloth over a 1m tall hoophouse (Hoophouse method). The Greenhouse method had nested basins with water wicking up to the soil surface and biocrust from below, with shade cloth attached to basins. We crossed these methods with the addition of native soil or sand and with and without a base of jute using salvaged biocrusts from the Sonoran Desert. 

3.     All methods led to at least doubling biocrust cover in 11 weeks. The Greenhouse method led to the highest cover of cyanobacteria and mosses, whereas the field Quesadilla method and the addition of native soil in all cultivation methods led to higher abundance of lichens. There were interactions of cultivation method and soil type, with Greenhouse cultivation and native soil promoting the highest cyanobacteria cover and chlorophyll a. We measured exopolysaccharide sheaths (EPS) in native soil and all cultivation conditions, finding no differences for tightly bound sheath fractions, but higher quantities of the loosely bound EPS in the Greenhouse. We also quantified native and non-native plants in cultivation, finding few plants in Greenhouse cultivation, but high abundance in both Field methods, and particularly with native soil and without jute for native plants. 

4.     Synthesis and applications: Together, these results demonstrate that all three cultivation methods are successful for bulking biocrust materials for restoration, and preference should be given to the method that is the easiest and most accessible for practitioners.
DOI: 10.15468/dl.kbp59t
title: Occurrence Download

description: A dataset containing 847897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GbifRegion is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 847897 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026931-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27078271
title: XRF Maps, XRD Patterns, and Ca and Mn XANES Spectra for Soudan Core and Associated Thin Sections

description: These data were used to characterize borehole cores from the Soudan Underground Mine State Park, Soudan, MN, USA. The purpose of the study was to better understand how alteration processes affect the habitability of the crustal deep biosphere. The data contained herein consist of bulk powder XRD collected from crushed bulk core fragments and XRF maps and point XANES spectra collected from thin sections prepared from the core. These data accompany a manuscript titled "Low- and High-temperature Alteration in Fractured Rock Impacts the Habitability of the Continental Deep Biosphere", submitted to the journal <i>ACS Earth and Space Chemistry</i>.
DOI: 10.6084/m9.figshare.27078271.v1
title: XRF Maps, XRD Patterns, and Ca and Mn XANES Spectra for Soudan Core and Associated Thin Sections

description: These data were used to characterize borehole cores from the Soudan Underground Mine State Park, Soudan, MN, USA. The purpose of the study was to better understand how alteration processes affect the habitability of the crustal deep biosphere. The data contained herein consist of bulk powder XRD collected from crushed bulk core fragments and XRF maps and point XANES spectra collected from thin sections prepared from the core. These data accompany a manuscript titled "Low- and High-temperature Alteration in Fractured Rock Impacts the Habitability of the Continental Deep Biosphere", submitted to the journal <i>ACS Earth and Space Chemistry</i>.
DOI: 10.15468/dl.etw2xp
title: Occurrence Download

description: A dataset containing 18659225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Artportalen",
 "Issue is one of (Institution match none, The taxon ID was not used in backbone matching, Taxon match higher rank, Taxon match fuzzy)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 18659225 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026932-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtw4bm
title: Occurrence Download

description: A dataset containing 1717349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Canopidae, Megarididae, Lestoniidae, Thaumastellidae, Phloeidae, Parastrachiidae, Urostylididae, Dinidoridae, Thyreocoridae, Plataspididae, Acanthosomatidae, Tessaratomidae, Scutelleridae, Cydnidae, Pentatomidae)",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "Issue" : [
 "is Taxon match higher rank"
 ]
 }
 }
 ]
}

 The dataset includes 1717349 records from 2870 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026937-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.