cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13557398.v1
title: non-redundant.novel.fa

description: Novel sequences identified in PanSoy.
DOI: 10.34740/kaggle/dsv/1837175
title: US counties COVID 19 dataset
DOI: 10.6073/pasta/0bb537798102a3ad2c8cdb7a0412fe2a
title: PIE LTER, year 2018, 15 minute measurements of stage in a small headwater stream draining a highly suburban catchment (72% residential), Saw Mill Brook, Burlington, MA.

description: Year 2018, continuous measurements, every 15 minutes, were made of depth and stream temperature in a small headwater stream, Saw Mill Brook, Burlington, MA, draining a highly suburban catchment (72% residential). Discharge is determined from stage using discharge vs stage regressions.
DOI: 10.25345/c56495
title: MassIVE MSV000086683 - Targeted_LCMS/MS_PRMAnalysis_TMANO_Bz_Carnitine_Efficacy_Study
title: 5-week-old male Swiss Webster mice were infected with 500,000 X10/4 Trypanosoma cruzi parasites or left uninfected. Plasma via the saphenous vein was collected 9 weeks post-infection pre-treatment. 10 weeks post-infection treatment began by the following groups: Benznidazole (gavage) + L-carnitine (oral), Benznidazole (gavage) + L-carnitine (IP injection), Benznidazole only (gavage), and vehicle. In addition, each treatment group had full and half dose treatments. Treatment was continued for 6 weeks and plasma collected at treatment midpoint and endpoint. Mice were euthanized 18 weeks post-infection 2 weeks after carnitine treatment ended. Metabolites were extracted in 74% methanol. Liquid chromatography separation was performed on a Phenomenex C18 LC Column 50 x 2.1 mm, with water+0.1% formic acid and acetonitrile+0.1% formic acid as mobile phases in positive mode. Targeted PRM analysis was done targeting benznidazole and TMANO.
DOI: 10.6084/m9.figshare.13557263
title: Data Repository

description: Collection of scripts and numerically derived data.
DOI: 10.6084/m9.figshare.13557263.v1
title: Data Repository

description: Collection of scripts and numerically derived data.
DOI: 10.6084/m9.figshare.13557245
title: Supplementary Material_Lanferdini et al. 2021_Journal of Sports Sciences

description: All data from the manuscript: EFFECT OF PHOTOBIOMODULATION THERAPY ON PERFORMANCE AND RUNNING ECONOMY IN RUNNERS: A RANDOMIZED DOUBLE-BLINDED PLACEBO-CONTROLLED TRIAL<b></b><br>
DOI: 10.6084/m9.figshare.13557245.v1
title: Supplementary Material_Lanferdini et al. 2021_Journal of Sports Sciences

description: All data from the manuscript: EFFECT OF PHOTOBIOMODULATION THERAPY ON PERFORMANCE AND RUNNING ECONOMY IN RUNNERS: A RANDOMIZED DOUBLE-BLINDED PLACEBO-CONTROLLED TRIAL<b></b><br>
DOI: 10.5281/zenodo.4431745
title: Sensitive mass spectrometric determination of kinin-kallikrein system peptides in light of COVID-19

description: This dataset provides information on the obtained MS/MS data generated during the conducted validation runs. Abstract of the corresponding paper: The outbreak of COVID-19 has raised interest in the kinin–kallikrein system, as symptoms were postulated to be in connection. Viral blockade of the angiotensin-converting-enzyme 2 impedes degradation of the active kinin des-Arg(9)-bradykinin, which thus increasingly activates bradykinin receptors known to promote inflammation, cough, and edema – symptoms that are commonly observed in COVID-19. However, lean and reliable investigation of the postulated alterations is currently hindered by non-specific peptide adsorption, lacking sensitivity, and cross-reactivity of applicable assays. Here, an LC-MS/MS method was established to determine the following kinins in respiratory lavage fluids: kallidin, bradykinin, des-Arg(10)-kallidin, des-Arg(9)-bradykinin, bradykinin 1-7, bradykinin 2-9 and bradykinin 1-5. This method was fully validated according to regulatory bioanalytical guidelines of the European Medicine Agency and the US Food and Drug Administration and has a broad calibration curve range (up to a factor of 10<sup>3</sup>), encompassing low quantification limits of 4.4–22.8 pg/mL (depending on the individual kinin). The application of the developed LC-MS/MS method to nasal lavage fluid allowed for the rapid (~2 hours), comprehensive and low-volume (100 µL) determination of kinins for the first time. Hence, this novel assay may support current efforts to investigate the pathophysiology of COVID-19, but can also be extended to other diseases.
description: Detailed validation data is represented here.
DOI: 10.5281/zenodo.4431744
title: Sensitive mass spectrometric determination of kinin-kallikrein system peptides in light of COVID-19

description: This dataset provides information on the obtained MS/MS data generated during the conducted validation runs. Abstract of the corresponding paper: The outbreak of COVID-19 has raised interest in the kinin–kallikrein system, as symptoms were postulated to be in connection. Viral blockade of the angiotensin-converting-enzyme 2 impedes degradation of the active kinin des-Arg(9)-bradykinin, which thus increasingly activates bradykinin receptors known to promote inflammation, cough, and edema – symptoms that are commonly observed in COVID-19. However, lean and reliable investigation of the postulated alterations is currently hindered by non-specific peptide adsorption, lacking sensitivity, and cross-reactivity of applicable assays. Here, an LC-MS/MS method was established to determine the following kinins in respiratory lavage fluids: kallidin, bradykinin, des-Arg(10)-kallidin, des-Arg(9)-bradykinin, bradykinin 1-7, bradykinin 2-9 and bradykinin 1-5. This method was fully validated according to regulatory bioanalytical guidelines of the European Medicine Agency and the US Food and Drug Administration and has a broad calibration curve range (up to a factor of 10<sup>3</sup>), encompassing low quantification limits of 4.4–22.8 pg/mL (depending on the individual kinin). The application of the developed LC-MS/MS method to nasal lavage fluid allowed for the rapid (~2 hours), comprehensive and low-volume (100 µL) determination of kinins for the first time. Hence, this novel assay may support current efforts to investigate the pathophysiology of COVID-19, but can also be extended to other diseases.
description: Detailed validation data is represented here.
DOI: 10.25919/rv3j-as41
title: Parkes observations for project P1050 semester 2020OCTS_04

description: This is a request for observing time for the timing campaign of new pulsar discoveries and follow-up of expected new potential pulsars from the re-processing of the low-latitude Galactic plane section of the HTRU survey (P630). We have now completed the first pass re-processing of the 62 % of the survey with GPU based coherent acceleration search and template bank search pipelines, and have discovered 51 previously unknown pulsars. Interesting science can usually only be derived from a new pulsar after confirmation and a follow-up timing campaign is carried out. One year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, spin-down rate, as well as to detect any unexpected behaviour of the pulsar which might result from emission instabilities. This timing project is necessary for following up on any interesting pulsar systems discovered from the HTRU Galactic plane survey. Since all of the pulsars on the observing list here have been confirmed in the current 2020APRS semester, the follow-up timing will produce completely new and exciting results. In addition, this timing project will enable a large-scale examination of the Galactic plane pulsar population, exploring the true boundaries of pulsar parameter space in the galactic plane.
DOI: 10.7303/syn18488020
title: Machine Learning Identifies Candidates for Drug Repurposing in Alzheimer’s Disease
DOI: 10.5281/zenodo.4432995
title: Data for National interest may require distributing COVID-19 vaccines to other countries

description: Countries Groups contains information on which countries are considered as part of COVAX. Population contains information on population.
DOI: 10.5281/zenodo.4432994
title: Data for National interest may require distributing COVID-19 vaccines to other countries

description: Countries Groups contains information on which countries are considered as part of COVAX. Population contains information on population.
DOI: 10.5066/p9ed5aik
title: Copper River and Knik River Bathymetric Surveys at Select Alaska Highway Bridges near Flag Point and Butte, Alaska, 2020

description: In 2020, the Alaska Science Center and the Idaho Water Science Center conducted bathymetric surveys at three highway bridge structures. The bridge structures (NBI 331 and 1187) at Flag Point near Cordova, AK are located on Alaska State Route 10 (commonly referred to as the Copper River Highway). Bridge structure NBI 539 on the Knik River is located on the Old Glenn Hwy near Butte, AK. These bathymetry data generally include complete coverage for upstream and downstream channels, except for extreme shallow areas along banks, where structures limited boat access, or where data was removed during post-processing. Bridges 1187, 331, and 539 are scour-critical bridges, and 1187 and 539 are part of the Alaska Science Center's real-time bridge scour monitoring program. High-resolution bathymetric data were requested to provide representation of streambed elevations near the bridge foundations to better evaluate scour and sediment transport in each reach.
DOI: 10.15468/wgfxtq
title: Hybridization patterns in two contact zones of grass snakes reveal a new Central European snake species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kindler, Carolin, Ch?vre, Maxime, Ursenbacher, Sylvain, B?hme, Wolfgang, Hille, Axel, Jablonski, Daniel, Vamberger, Melita, Fritz, Uwe (2017): Hybridization patterns in two contact zones of grass snakes reveal a new Central European snake species. Scientific Reports 7 (1): 73-78, DOI: 10.1038/s41598-017-07847-9, URL: http://dx.doi.org/10.1038/s41598-017-07847-9
DOI: 10.6069/mca3-pw91
title: Global Burden of Disease Study 2019 (GBD 2019) Under-5 Mortality by Detailed Age Groups 1950-2019

description: The Global Burden of Disease Study 2019 (GBD 2019), coordinated by the Institute for Health Metrics and Evaluation (IHME), estimated the burden of diseases, injuries, and risk factors for 204 countries and territories and selected subnational locations.

This dataset provides annual estimates for 1950–2019 for numbers of deaths, mortality rate, and probability of death by sex for 6 age groups under 5 years: 0–6 days (early neonatal), 7–27 days (late neonatal), 1–5 months, 6–11 months, 12–23 months, and 2–4 years. There were 7417 sources used to produce these estimates. These included 28,016 location-years of vital registration data, 481 surveys with complete birth histories, and 1081 sources on summary birth histories.
DOI: 10.6069/z4k3-2n12
title: Latin American Country HIV Mortality Geospatial Estimates by Age and Sex 2000-2017

description: Annual estimates were produced for the HIV mortality rate and number of deaths due to HIV by sex and age group in the 0-80+ year range at the municipality level in six countries in Latin America: Brazil, Mexico, Guatemala, Costa Rica, Colombia, and Ecuador. The estimates cover from 2000 to 2017 in Brazil, Colombia, and Mexico; from 2009 to 2017 in Guatemala; from 2004 to 2014 in Ecuador; and from 2014 to 2016 in Costa Rica. Input data sources consisted of vital registration (VR) mortality data — anonymized individual-level records from all deaths reported in each country’s VR system occurring between the years of study.

This dataset includes the following:

- CSV files of estimates of the HIV mortality rate and the number of HIV deaths by age group and sex for each country at zero, first, and second administrative divisions
- Code files used to generate the estimates
- The shapefile used to inform the estimates
DOI: 10.6084/m9.figshare.3761562.v1742
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5066/p9r1o71m
title: Nimz Ranch Tie Channel Velocity Mapping and Discharge Measurements, Kootenai River near Bonners Ferry, ID

description: Discharge measurements and velocity mapping surveys were completed at select tie channels located at Nimz Ranch, on the main-stem Kootenai River. Tie channels convey water and sediments between the main river channel and river floodplain waterbodies. The velocity mapping surveys are used to document how the tie channels interact with the main-stem Kootenai River. Similar surveys will be conducted following project construction completion (after 2021). Velocity mapping provides data to support the flow split estimates in the tie channel reconnection. These mapping efforts are a quantitative assessment of the the tie channels role in altering drift, temperature, and floodplain storage. An acoustic Doppler current profiler (ADCP) or acoustic Doppler velocimeter can survey select hydraulic characteristics of a flow field including: velocity magnitude and direction, turbulence, backscatter, and/or discharge. For channel discharge measurements, six transects were collected at pre-determined cross-sections to obtain an average velocity cross-sectional profile and corresponding discharge for the section. For general velocity mapping, the specified study area was discretized into representative zones which are measured a minimum of six times along multiple closely spaced sections to establish the dominant trend of velocity magnitude and direction within the zone. Data were processed using the Velocity Mapping Toolbox (Parsons and other, 2013) and smoothed using a neighboring nodes algorithm. These data are located in the zipped file below (KootenaiR_NimzRanch_Vmapping.zip). Data collected with an acoustic Doppler velocimeter are published in the summary spreadsheet (KootenaiR_NimzRanch_Vmapping_Qmsmt_Summary.xlsx). Naming convention for each cross-section corresponds to the measurement location. Main-stem cross sections are denoted as KR_NR_USMC_1 or KR_DR_DSMC_1 for upstream and downstream cross sections on the Kootenai River, respectively. Tie-channel cross sections connecting the Kootenai River to Nimz Ranch are denoted as KR_NR_USTC_1 (farthest upstream), KR_NR_USTC_2, KR_NR_USTC_3, and KR_NR_DSTC_1 (farthest downstream).
DOI: 10.25505/fiz.icsd.cc21cnjm
title: CSD 1888040: Experimental Crystal Structure Determination

description: Related Article: Michael Langenmaier, Julian Brantl, Caroline Röhr|2020|J.Solid State Chem.|294|121455|doi:10.1016/j.jssc.2020.121455
DOI: 10.25505/fiz.icsd.cc21cnqt
title: CSD 1888046: Experimental Crystal Structure Determination

description: Related Article: Michael Langenmaier, Julian Brantl, Caroline Röhr|2020|J.Solid State Chem.|294|121455|doi:10.1016/j.jssc.2020.121455
DOI: 10.5517/ccdc.csd.cc23ty1y
title: CCDC 1961340: Experimental Crystal Structure Determination

description: Related Article: Azizolla Beheshti, Kimia Nozarian, Elham Sadat Mousavifard, Carmel T. Abrahams, Peter Mayer, Roman Gajda, Krzysztof Woźniak, Hossein Motamedi|2020|J.Solid State Chem.|294|121874|doi:10.1016/j.jssc.2020.121874
DOI: 10.5517/ccdc.csd.cc24h1wl
title: CCDC 1980679: Experimental Crystal Structure Determination

description: Related Article: Azizolla Beheshti, Kimia Nozarian, Elham Sadat Mousavifard, Carmel T. Abrahams, Peter Mayer, Roman Gajda, Krzysztof Woźniak, Hossein Motamedi|2020|J.Solid State Chem.|294|121874|doi:10.1016/j.jssc.2020.121874
DOI: 10.5517/ccdc.csd.cc24h1tj
title: CCDC 1980677: Experimental Crystal Structure Determination

description: Related Article: Azizolla Beheshti, Kimia Nozarian, Elham Sadat Mousavifard, Carmel T. Abrahams, Peter Mayer, Roman Gajda, Krzysztof Woźniak, Hossein Motamedi|2020|J.Solid State Chem.|294|121874|doi:10.1016/j.jssc.2020.121874
DOI: 10.5517/ccdc.csd.cc24j2nf
title: CCDC 1981664: Experimental Crystal Structure Determination

description: Related Article: Azizolla Beheshti, Kimia Nozarian, Elham Sadat Mousavifard, Carmel T. Abrahams, Peter Mayer, Roman Gajda, Krzysztof Woźniak, Hossein Motamedi|2020|J.Solid State Chem.|294|121874|doi:10.1016/j.jssc.2020.121874
DOI: 10.5281/zenodo.4383318
title: Data for "A Phaseless Auxiliary-Field Quantum Monte Carlo Perspective on the UniformElectron Gas at Finite Temperatures: Issues, Observations, and Benchmark Study"

description: Phaseless AFQMC data (input and output) for "A Phaseless Auxiliary-Field Quantum Monte Carlo Perspective on the UniformElectron Gas at Finite Temperatures: Issues, Observations, and Benchmark Study" data: contains raw qmc data figures: contains analysed data + plotting scripts.
DOI: 10.5281/zenodo.4383317
title: Data for "A Phaseless Auxiliary-Field Quantum Monte Carlo Perspective on the UniformElectron Gas at Finite Temperatures: Issues, Observations, and Benchmark Study"

description: Phaseless AFQMC data (input and output) for "A Phaseless Auxiliary-Field Quantum Monte Carlo Perspective on the UniformElectron Gas at Finite Temperatures: Issues, Observations, and Benchmark Study" data: contains raw qmc data figures: contains analysed data + plotting scripts.
DOI: 10.5519/qd.lokqd9pg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3001 records)
DOI: 10.5281/zenodo.4067119
title: Human Brain MRI Template and Myelin Atlas

description: The structural template, quantitative myelin water imaging atlases, tissue segmentations, and regions of interest (ROIs) generated and analyzed for <em>An atlas for human brain myelin content throughout the adult life span</em> https://www.nature.com/articles/s41598-020-79540-3
DOI: 10.5281/zenodo.4067118
title: Human Brain MRI Template and Myelin Atlas

description: The structural template, quantitative myelin water imaging atlases, tissue segmentations, and regions of interest (ROIs) generated and analyzed for <em>An atlas for human brain myelin content throughout the adult life span</em> https://www.nature.com/articles/s41598-020-79540-3
DOI: 10.17632/6c4pnyjs3t.1
title: Data for: In the Mind of the Beholder: Narcissism Relates to a Distorted and Enhanced Self-Image

description: In the Mind of the Beholder Dataset.
DOI: 10.6084/m9.figshare.13557482
title: Summit Algorithm Images Analyzed

description: Electrophoretic cytometry images of GFP, GAPDH and simulated images that have been analyzed by the Summit algorithm
DOI: 10.6084/m9.figshare.13557482.v1
title: Summit Algorithm Images Analyzed

description: Electrophoretic cytometry images of GFP, GAPDH and simulated images that have been analyzed by the Summit algorithm
DOI: 10.6084/m9.figshare.13557770.v1
title: PHANOTOME June 2017 Backup

description: The June 2017 phage genome database file downloaded from phantome.org<br>It contains 2,996 phage genomes in GenBank format.<br>
DOI: 10.6084/m9.figshare.13557770
title: PHANOTOME June 2017 Backup

description: The June 2017 phage genome database file downloaded from phantome.org<br>It contains 2,996 phage genomes in GenBank format.<br>
DOI: 10.25345/c5xn5b
title: MassIVE MSV000086685 - MITOMICS: defining mitochondrial protein functions through deep multi-omic profiling
title: Mitochondria are epicenters of eukaryotic metabolism and bioenergetics. Pioneering efforts in recent decades have established the core protein componentry of these organelles and have linked their dysfunction to over 150 distinct disorders. However, hundreds of mitochondrial proteins still lack clear functions, and ~40% of mitochondrial disorders remain unresolved. To establish a more complete functional compendium of human mitochondrial proteins, we profiled 203 CRISPR-mediated HAP1 cell knockout lines using mass spectrometry-based multi-omics analyses. This effort generated ~8.2 million distinct biomolecule measurements, providing a deep survey of the cellular responses to mitochondrial perturbations, and laying a foundation for mechanistic investigations into protein function. Guided by these data, we discovered that PYURF is a SAM-dependent methyltransferase chaperone that supports both complex I assembly and coenzyme Q biosynthesis, and that is disrupted in a previously unresolved multisystemic mitochondrial disorder. We further linked the putative zinc transporter SLC30A9 to mitoribosome and OxPhos integrity and established RAB5IF as the second gene harboring pathogenic variants causing cerebrofaciothoracic dysplasia. Our data - which can be explored through an interactive online resource - suggest biological roles for many other orphan mitochondrial proteins still lacking robust functional characterization, and define a rich cell signature of mitochondrial dysfunction that can support the genetic diagnosis of mitochondrial diseases.
DOI: 10.5517/ccdc.csd.cc2597qg
title: CCDC 2004885: Experimental Crystal Structure Determination

description: Related Article: Yan Zhang, Zhipeng Lin, Lutz Ackermann|2020|Chem.-Eur.J.|27|242|doi:10.1002/chem.202004229
DOI: 10.25919/4n33-dj58
title: Parkes observations for project P1041 semester 2020OCTS_01

description: We propose to start a long-term timing campaign of millisecond pulsars (MSPs) discovered in the Globular Cluster Omega Centauri. So far, we have discovered seven MSPs and obtained coherent timing solutions for five of them. Monthly observations with the Parkes Ultra-Wideband Low (UWL) receiver system are requested to time known pulsars and search for new pulsars. Long-term timing and polarisation observations of these MSPs will provide us a new way to (1) study the dynamics of the core and constrain the existence of any intermediate-mass black holes; (2) reveal the origin of Gamma-ray emission from the core and put stringent constraints on dark matter parameters; (3) study the ionised medium and magnetic fields in the cluster core.
DOI: 10.3886/e123601v1-73420
title: Risk and protective factors for psychological distress during Covid-19 in Israel

description: This folder contains the data and all necessary files to replicate all results from the article “ <br>"Risk and protective factors for psychological distress during Covid-19 in Israel”
description: Response Rates: 655 participants took part in the study, after excluding 200 participants who did not complete the questionnaires
description: Presence of Common Scales: PHQ-9 - 0 (not at all) to 3 (nearly every day).<br>Gratitude- 1 (do not agree at all) to 7 (very much agree) <br>life orientation test (LOT)- 0 (do not agree at all) 4 (very much agree)<br>COPE - 0 (not at all) to 5 (very much).<br>MSPSS - 0 (not at all) to 7 (very much)<br>GAD-7- s 0 (not at all to) 3 (almost every day).<br>
description: web-based survey;
description: Persons aged 18 and over, living in Israel with fluent Hebrow.<br>. Smallest Geographic Unit: Israel
description: Participants were recruited by snowball sampling, selected to represent the adult population in isreal.
DOI: 10.3886/e113773v1-73421
title: Replication data for: Are Restaurants Really Supersizing America?

description: While many researchers and policymakers infer from correlations between eating out and body weight that restaurants are a leading cause of obesity, a basic identification problem challenges these conclusions. We exploit the placement of Interstate Highways in rural areas to obtain exogenous variation in the effective price of restaurants and examine the impact on body mass. We find no causal link between restaurant consumption and obesity. Analysis of food-intake micro-data suggests that consumers offset calories from restaurant meals by eating less at other times. We conclude that regulation targeting restaurants is unlikely to reduce obesity but could decrease consumer welfare. (JEL I12, I18, L51, L66)