cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3812668_d4
title: MOESM2 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 2. Luciferase reporter assay results of G4 DNA sequences cloned in pGL4.23 vector.
DOI: 10.6084/m9.figshare.c.3812668_d5
title: MOESM3 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 3. Luciferase reporter assay results of G4 DNA sequences cloned in pGL4.10 vector.
DOI: 10.6084/m9.figshare.c.3812668_d6
title: MOESM4 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 4. Luciferase reporter assay results of CGI DNA sequences cloned in pGL4.10 vector.
DOI: 10.6084/m9.figshare.c.3812668_d7
title: MOESM5 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 5. Luciferase reporter assay results with or without L1H1-7OTD for G4 DNA sequences cloned in pGL4.23 vector.
DOI: 10.15468/dl.ksvumx
title: Occurrence Download

description: A dataset containing 13360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Piranga bidentata Swainson, 1827"
 ]
}

 The dataset includes 13360 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039429-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3812668_d11.v1
title: MOESM9 of Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands

description: Additional file 9. CD spectra results of Cdc6 G4 DNA wild-type sequence with or without L1H1-7OTD.
DOI: 10.6084/m9.figshare.c.3815584_d2
title: MOESM2 of A practical examination of RNA isolation methods for European pear (Pyrus communis)

description: Additional file 2. Abbreviated database for all isolations done in this study.
DOI: 10.15468/dl.a57j9s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma mavortium stebbinsi Lowe, 1954)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039430-241126133413365/datasets/export for details.
DOI: 10.5281/zenodo.14515544
title: 3D source date
DOI: 10.5281/zenodo.14515545
title: 3D source date
DOI: 10.6084/m9.figshare.c.3816250_d2
title: Additional file 11: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Mouse brain Mov10 clip targets. (XLSX 219Â kb)
DOI: 10.6084/m9.figshare.c.3816250_d3
title: Additional file 12: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Forty-seven brain Mov10/Fmrp/Ago2 cobound mRNAs. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3816250_d10.v1
title: Additional file 5: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Brain RIP-seq-mRNA identities. (XLSX 346Â kb)
DOI: 10.5281/zenodo.13880013
title: CropRot (full dataset)

description: Official repository of the CropRot Dataset 

The dataset is composed of 4 repositories, each corresponding to data collected on a S2 tile. 

T30UXV : https://zenodo.org/uploads/13842625

T32ULU: https://zenodo.org/uploads/13832554

T31TFJ : https://zenodo.org/uploads/13843322

T31TFM : https://zenodo.org/uploads/13847056

The code available to create this dataset is available at : https://src.koda.cnrs.fr/iris.dumeur/modcix. 

This dataset is constructed based on the labels given in https://entrepot.recherche.data.gouv.fr/dataset.xhtml?persistentId=doi:10.57745/W8SQPZ. This latter repository provides sequential RPG labels. 

A jupyter notebook details how the data from CropRot can be exploited: https://src.koda.cnrs.fr/iris.dumeur/modcix/-/blob/master/notebooks/Open_Croprot.ipynb
DOI: 10.5281/zenodo.13880014
title: CropRot (full dataset)

description: Official repository of the CropRot Dataset 

The dataset is composed of 4 repositories, each corresponding to data collected on a S2 tile. 

T30UXV : https://zenodo.org/uploads/13842625

T32ULU: https://zenodo.org/uploads/13832554

T31TFJ : https://zenodo.org/uploads/13843322

T31TFM : https://zenodo.org/uploads/13847056

The code available to create this dataset is available at : https://src.koda.cnrs.fr/iris.dumeur/modcix. 

This dataset is constructed based on the labels given in https://entrepot.recherche.data.gouv.fr/dataset.xhtml?persistentId=doi:10.57745/W8SQPZ. This latter repository provides sequential RPG labels. 

A jupyter notebook details how the data from CropRot can be exploited: https://src.koda.cnrs.fr/iris.dumeur/modcix/-/blob/master/notebooks/Open_Croprot.ipynb
DOI: 10.6084/m9.figshare.c.3816250_d9.v1
title: Additional file 4: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Brain RIP-seq-repeat element identities. (XLSX 454Â kb)
DOI: 10.6084/m9.figshare.c.3816250_d12.v1
title: Additional file 7: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Brain iCLIP mRNA identities. (XLSX 71Â kb)
DOI: 10.6084/m9.figshare.c.3816250_d9
title: Additional file 4: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Brain RIP-seq-repeat element identities. (XLSX 454Â kb)
DOI: 10.6084/m9.figshare.c.3816250_d12
title: Additional file 7: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Brain iCLIP mRNA identities. (XLSX 71Â kb)
DOI: 10.6084/m9.figshare.c.3816250_d10
title: Additional file 5: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: Brain RIP-seq-mRNA identities. (XLSX 346Â kb)
DOI: 10.15468/dl.wjukhm
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Balaena Linnaeus, 1758",
 "Year 2000-2024"
 ]
}

 The dataset includes 394 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039432-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3816250_d14.v1
title: Additional file 9: of Mov10 suppresses retroelements and regulates neuronal development and function in the developing brain

description: RNA-seq of N2a WT undifferentiated versus WT differentiated N2a. (XLSX 5557Â kb)
DOI: 10.3535/5ls-skn-z7t
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816340_d11
title: Additional file 1: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Result of RNA sequencing for A. niger N402 and T. reesei RUT-C30 grown on sugarcane SEB and fructose. (XLSX 12 kb)
DOI: 10.3535/ysk-smh-ksk
title: Hydroides spongicola Benedict, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4jc-g1t-q2q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ae2-fn9-epf
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816340_d12.v1
title: Additional file 20: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Interesting upregulated genes in A. niger N402 and T. reesei RUT-C30 transcriptomes. (XLSX 33 kb)
DOI: 10.3535/8w0-z9k-ms9
title: Hydroides spongicola Benedict, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nke-8s4-djt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yas-3px-7nn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816340_d12
title: Additional file 20: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Interesting upregulated genes in A. niger N402 and T. reesei RUT-C30 transcriptomes. (XLSX 33 kb)
DOI: 10.3535/3y3-tdd-a2z
title: Hydroides alatalateralis (Jones, 1962)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hsa-47a-hv9
title: Hydroides spongicola Benedict, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816340_d13.v1
title: Additional file 21: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Unknown proteins with predicted signal peptide whose genes were upregulated in A. niger N402 and T. reesei RUT-C30 transcriptomes. (XLSX 6133 kb)
DOI: 10.3535/pzn-rqp-9bc
title: Hydroides spongicola Benedict, 1887

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.c.3816340_d13
title: Additional file 21: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Unknown proteins with predicted signal peptide whose genes were upregulated in A. niger N402 and T. reesei RUT-C30 transcriptomes. (XLSX 6133 kb)
DOI: 10.6084/m9.figshare.c.3816340_d14.v1
title: Additional file 22: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Primers used in the RT-qPCR analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3816340_d16.v1
title: Additional file 3: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Gene ontology enrichment analysis. (XLSX 17 kb)
DOI: 10.15468/dl.67tace
title: Occurrence Download

description: A dataset containing 8394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (BRA.5.215_2, BRA.5.271_2, BRA.5.396_2, BRA.5.416_2, BRA.5.113_2, BRA.5.10_2, BRA.5.341_2)",
 "IucnRedListCategory is one of (EX, EW, CR, EN, VU, NT, LC, DD, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 8394 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039433-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3816340_d15.v1
title: Additional file 2: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: All DEGs found in the transcriptomes of A. niger N402 and T. reesei RUT-C30 grown on sugarcane SEB. (XLSX 1286 kb)
DOI: 10.6084/m9.figshare.c.3816340_d15
title: Additional file 2: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: All DEGs found in the transcriptomes of A. niger N402 and T. reesei RUT-C30 grown on sugarcane SEB. (XLSX 1286 kb)
DOI: 10.6084/m9.figshare.c.3816340_d17.v1
title: Additional file 4: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Differentially expressed CAZymes upregulated in the A. niger N402 transcriptome. (XLSX 1000 kb)
DOI: 10.6084/m9.figshare.c.3816340_d16
title: Additional file 3: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Gene ontology enrichment analysis. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3816340_d14
title: Additional file 22: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Primers used in the RT-qPCR analysis. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3816340_d18.v1
title: Additional file 5: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Differentially expressed CAZymes upregulated in the T. reesei RUT-C30 transcriptome. (XLSX 1074 kb)
DOI: 10.6084/m9.figshare.c.3816340_d19.v1
title: Additional file 6: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Predicted orthologues of genes coding CAZymes upregulated in both A. niger N402 and T. reesei RUT-C30 transcriptomes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3816340_d17
title: Additional file 4: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Differentially expressed CAZymes upregulated in the A. niger N402 transcriptome. (XLSX 1000 kb)
DOI: 10.6084/m9.figshare.c.3816340_d18
title: Additional file 5: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Differentially expressed CAZymes upregulated in the T. reesei RUT-C30 transcriptome. (XLSX 1074 kb)
DOI: 10.6084/m9.figshare.c.3816349_d1.v1
title: Additional file 1: of Identifying differential miR and gene consensus patterns in peripheral blood of patients with cardiovascular diseases from literature data

description: Supplementary Information 1: Structure of the Analysis Excel sheet. (ZIP 3155 kb)
DOI: 10.6084/m9.figshare.c.3816340_d19
title: Additional file 6: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Predicted orthologues of genes coding CAZymes upregulated in both A. niger N402 and T. reesei RUT-C30 transcriptomes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3816340_d20.v1
title: Additional file 7: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Transcriptional profile of main CAZy families related to lignocellulose degradation. (XLSX 444 kb)
DOI: 10.6084/m9.figshare.c.3816349_d1
title: Additional file 1: of Identifying differential miR and gene consensus patterns in peripheral blood of patients with cardiovascular diseases from literature data

description: Supplementary Information 1: Structure of the Analysis Excel sheet. (ZIP 3155 kb)
DOI: 10.6084/m9.figshare.c.3816340_d20
title: Additional file 7: of Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

description: Transcriptional profile of main CAZy families related to lignocellulose degradation. (XLSX 444 kb)
DOI: 10.15468/dl.8nkcjy
title: Occurrence Download

description: A dataset containing 12043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma opacum (Gravenhorst, 1807))"
 ]
}

 The dataset includes 12043 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039434-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3817633_d4
title: Additional file 4: Table S4. of Comparative muscle transcriptome associated with carcass traits of Nellore cattle

description: Functional enrichment analysis performed by DAVID (p value &lt;0.1) comparing high and low genomic breeding value groups for backfat thickness. The table contains Gene Ontology category, identification and description, p value, p value adjusted for a false discovery rate of 10% and the DE genes for each category. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3817642_d3.v1
title: Additional file 3: of Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface

description: Full list of gene transcription levels ordered by different functional groups. (XLSX 766 kb)
DOI: 10.6084/m9.figshare.c.3817633_d5.v1
title: Additional file 5: Table S5. of Comparative muscle transcriptome associated with carcass traits of Nellore cattle

description: Correspondence between sample names and European Nucleotide Archive (ENA) identifier (accession PRJEB13188 and PRJEB19421). (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3817642_d3
title: Additional file 3: of Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface

description: Full list of gene transcription levels ordered by different functional groups. (XLSX 766 kb)
DOI: 10.6084/m9.figshare.c.3817633_d5
title: Additional file 5: Table S5. of Comparative muscle transcriptome associated with carcass traits of Nellore cattle

description: Correspondence between sample names and European Nucleotide Archive (ENA) identifier (accession PRJEB13188 and PRJEB19421). (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3817654_d2.v1
title: MOESM4 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures

description: Additional file 2: Table S4. Mascot results.
DOI: 10.6084/m9.figshare.c.3817654_d2
title: MOESM4 of From grass to gas: microbiome dynamics of grass biomass acidification under mesophilic and thermophilic temperatures

description: Additional file 2: Table S4. Mascot results.
DOI: 10.15468/dl.v92x3j
title: Occurrence Download

description: A dataset containing 185788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Rugulopteryx okamurae (E.Y.Dawson) I.K.Hwang, W.J.Lee & H.S.Kim, 2009, Callinectes sapidus Rathbun, 1896)"
 ]
}

 The dataset includes 185788 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039422-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3818020_d1
title: Additional file 1: of Limited cutaneous systemic sclerosis skin demonstrates distinct molecular subsets separated by a cardiovascular development gene expression signature

description: Genes significantly differentially expressed between lcSSc and control groups. Green cells: genes with increased expression in controls. Yellow cells: genes with increased expression in lcSSc samples. (XLSX 16 kb)
DOI: 10.15468/dl.u9f7bn
title: Occurrence Download

description: A dataset containing 1377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax plancyi (Lataste, 1880)"
 ]
}

 The dataset includes 1377 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039436-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3818020_d2.v1
title: Additional file 2: of Limited cutaneous systemic sclerosis skin demonstrates distinct molecular subsets separated by a cardiovascular development gene expression signature

description: Genes significantly differentially expressed between the limited-1, limited-2 and control groups. Orange cells: genes with increased expression in limited 1 group. Green cells: genes with increased expression in controls. Grey cells: genes with increased expression in limited 2 group. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3818020_d3.v1
title: Additional file 3: of Limited cutaneous systemic sclerosis skin demonstrates distinct molecular subsets separated by a cardiovascular development gene expression signature

description: g:Profiler output for 475 genes with increased expression in the limited-1 group (multiclass SAM, FDR &lt;10%). Additional files 3 contain the following column headers. Descriptions are as follows: p value: significance of enrichment in a given term corrected for multiple hypothesis testing using default g:GOSt method g:SCS. Q&T: overlap between genes in the query (Q) and genes in the genome annotated to a given term (T). t type: term category - Gene Ontology: Biological Process (BP), Molecular Function (MF), Cellular Component (CC); KEGG (keg); Reactome (rea). t name: term name. Q&T list: list of genes forming the overlap between query (Q) and genome lists for a given term (T). (XLSX 25 kb)
DOI: 10.15468/dl.ssfpwa
title: Occurrence Download

description: A dataset containing 26555 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sargassum muticum (Yendo) Fensholt"
 ]
}

 The dataset includes 26555 records from 216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039435-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3818020_d2
title: Additional file 2: of Limited cutaneous systemic sclerosis skin demonstrates distinct molecular subsets separated by a cardiovascular development gene expression signature

description: Genes significantly differentially expressed between the limited-1, limited-2 and control groups. Orange cells: genes with increased expression in limited 1 group. Green cells: genes with increased expression in controls. Grey cells: genes with increased expression in limited 2 group. (XLSX 38 kb)
DOI: 10.25549/inscriptifact-ouc111133663
title: Daniel (Second Exemplaire), 1Q72 Daniel b:Alternate Text Title,1Q Daniel b:Alternate Text Title,

description: [Text Description:] Parts of Daniel 3:22-28, 27-30 ❧ [Text or Publication Number Note:] 1Q72 Dan b ❧ [Excavation Description:] Found in Qumran Cave 1 by George Isha'ya in 1949 and delivered to Mar Athanasius Samuel, Metropolitan of St. Mark's Monastery in Jerusalem. ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] One fragment is adhering to the back of a fragment of 1Q71 Dan a; the second fragment is adhering to the back of 1Q34bis LitPr b. ❧ [Physical Object Note:] Significant blackening of parchment. Rule lines can be clearly seen where the skin is not blackened.