cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5987608
title: Raw data from The importance of sampling standardization for comparisons of insect herbivory in deep time: a case study from the late Paleozoic

description: Sampling standardization has not been fully addressed for the study of insect herbivory in the fossil record. The effects of sampling within a single locality were explored almost a decade ago, but the importance of sampling standardization for comparisons of herbivory across space and time has not yet been evaluated. Here, we present a case study from the Permian in which we evaluate the impact of sampling standardization on comparisons of insect herbivory from two localities that are similar in age and floral composition. Comparisons of insect damage type (DT) diversity change dramatically when the number of leaves examined is standardized by surface area. This finding suggests that surface area should always be taken into account for comparisons of DT diversity. In addition, the three most common metrics of herbivory—DT diversity, proportion of leaves herbivorized and proportion of leaf surface area herbivorized—are inherently decoupled from each other. The decoupling of the diversity and intensity of insect herbivory necessitates a reinterpretation of published data because they had been conflated in previous studies. Future studies should examine the divergent ecological factors that underlie these metrics. We conclude with suggestions to guide the sampling and analysis of herbivorized leaves in the fossil record.
DOI: 10.6084/m9.figshare.5987602
title: Raw data from Effects of elevated carbon dioxide on male and female behavioural lateralization in a temperate goby

description: Data to reproduce analyses in the manuscript
DOI: 10.6084/m9.figshare.5987602.v1
title: Raw data from Effects of elevated carbon dioxide on male and female behavioural lateralization in a temperate goby

description: Data to reproduce analyses in the manuscript
DOI: 10.6084/m9.figshare.5987569
title: Supporting Information - Ross and Cheah 2018.xlsx

description: Tables and supplementary information for Ross, S.A. and L. Cheah (2018) Uncertainty quantification in life cycle assessments: Exploring distribution choice and greater data granularity to characterize product use, Journal of Industrial Ecology.
DOI: 10.6084/m9.figshare.5987569.v1
title: Supporting Information - Ross and Cheah 2018.xlsx

description: Tables and supplementary information for Ross, S.A. and L. Cheah (2018) Uncertainty quantification in life cycle assessments: Exploring distribution choice and greater data granularity to characterize product use, Journal of Industrial Ecology.
DOI: 10.6084/m9.figshare.5987521
title: Theoretical ribosomal protein mass fingerprint of Thalassiosira pseudonana

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Thalassiosira pseudonana</i>.<br><br>
DOI: 10.6084/m9.figshare.5987521.v1
title: Theoretical ribosomal protein mass fingerprint of Thalassiosira pseudonana

description: This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of <i>Thalassiosira pseudonana</i>.<br><br>
DOI: 10.6084/m9.figshare.5987341
title: Mycobacterium tuberculosis variations list

description: A merged vcf file of over 100 M. tuberculosis isolates that serves as representation of variation across the pathogen population.
DOI: 10.6084/m9.figshare.5987263
title: 3D data of wood chip heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987263.v1
title: 3D data of wood chip heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987260
title: 3D data of milkpowder heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987260.v1
title: 3D data of milkpowder heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987257
title: 3D data of limestone heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987257.v1
title: 3D data of limestone heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987254
title: 3D data of lignite heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987248
title: 3D data of freshly harvested corn grain heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987248.v1
title: 3D data of freshly harvested corn grain heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987245
title: 3D data of dried corn grain heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987245.v1
title: 3D data of dried corn grain heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987200
title: 3D data of blast furnace coke heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987197
title: 3D data of bituminous coal heaps

description: Contains STL meshes, raw 3D scan data and images
DOI: 10.6084/m9.figshare.5987110
title: 423 individual gene trees using RAxML

description: Gene trees based on supercontigs (exons plus introns) alignments obtained via the RAxML with 200 bootstrap replicates shown as branch label.
DOI: 10.6084/m9.figshare.5987110.v1
title: 423 individual gene trees using RAxML

description: Gene trees based on supercontigs (exons plus introns) alignments obtained via the RAxML with 200 bootstrap replicates shown as branch label.
DOI: 10.6084/m9.figshare.5987056
title: 507 targeted nuclear loci across legumes using transcriptomes

description: Sequences of 507 nuclear loci used to develop baits across legumes. Each fasta file includes sequences from 5 or more legume species.
DOI: 10.6084/m9.figshare.12894509
title: Data-Analysis of depinning behavior of drop on chemically heterogeneous surface.rar

description: The depinning behavior of a drop on an inclined heterogeneous surface comprising hydrophilic–hydrophobic stripes is investigated by the multiphase lattice Boltzmann method driven by the chemical potential
DOI: 10.6084/m9.figshare.5987056.v1
title: 507 targeted nuclear loci across legumes using transcriptomes

description: Sequences of 507 nuclear loci used to develop baits across legumes. Each fasta file includes sequences from 5 or more legume species.
DOI: 10.6084/m9.figshare.12894509.v1
title: Data-Analysis of depinning behavior of drop on chemically heterogeneous surface.rar

description: The depinning behavior of a drop on an inclined heterogeneous surface comprising hydrophilic–hydrophobic stripes is investigated by the multiphase lattice Boltzmann method driven by the chemical potential
DOI: 10.6084/m9.figshare.5986912
title: Data_PlosONE_20180315.csv

description: Minimal anonymized data set necessary to replicate your study findings
DOI: 10.6084/m9.figshare.5986912.v1
title: Data_PlosONE_20180315.csv

description: Minimal anonymized data set necessary to replicate your study findings
DOI: 10.6084/m9.figshare.5986867
title: Consort diagram 2

description: consort diagram
DOI: 10.6084/m9.figshare.5986867.v1
title: Consort diagram 2

description: consort diagram
DOI: 10.6084/m9.figshare.5986864
title: 7.Tumor budding WPOI data

description: WPOI data
DOI: 10.6084/m9.figshare.5986864.v2
title: 7.Tumor budding WPOI data

description: WPOI data
DOI: 10.6084/m9.figshare.5986864.v1
title: Tumor budding WPOI data

description: WPOI data
DOI: 10.6084/m9.figshare.5986861
title: 6.Tumor budding data

description: Tumor budding data
DOI: 10.6084/m9.figshare.5986861.v2
title: 6.Tumor budding data

description: Tumor budding data
DOI: 10.6084/m9.figshare.5986861.v1
title: Tumor budding data

description: Tumor budding data
DOI: 10.6084/m9.figshare.5986852
title: 5.Tumor budding pathological data

description: Pathological data
DOI: 10.6084/m9.figshare.5986852.v1
title: Tumor budding pathological data

description: Pathological data
DOI: 10.6084/m9.figshare.5986852.v2
title: Tumor budding pathological data

description: Pathological data
DOI: 10.6084/m9.figshare.5986831
title: 4.Tumor budding mode of invasion data

description: Clinical data
DOI: 10.6084/m9.figshare.5986831.v2
title: 4.Tumor budding mode of invasion data

description: Clinical data
DOI: 10.6084/m9.figshare.5986831.v1
title: Tumor budding mode of invasion data

description: Clinical data
DOI: 10.6084/m9.figshare.5986822
title: 3.Tumor budding depth data

description: Depth data
DOI: 10.6084/m9.figshare.5986822.v2
title: 3.Tumor budding depth data

description: Depth data
DOI: 10.6084/m9.figshare.5986822.v1
title: Tumor budding depth data

description: Depth data
DOI: 10.6084/m9.figshare.5986819
title: 2.Tumor budding clinical data

description: clinical data
DOI: 10.6084/m9.figshare.5986819.v1
title: Tumor budding

description: clinical data
DOI: 10.6084/m9.figshare.5986819.v2
title: Tumor budding clinical data

description: clinical data
DOI: 10.6084/m9.figshare.5986810
title: 1.Consort diagram

description: Consort diagram
DOI: 10.6084/m9.figshare.5986810.v1
title: Tumor budding

description: Consort diagram
DOI: 10.6084/m9.figshare.5986810.v3
title: 1.Consort diagram

description: Consort diagram
DOI: 10.6084/m9.figshare.5986810.v2
title: Consort diagram

description: Consort diagram
DOI: 10.17632/r5tfvj35p3.7
title: Data for: Adolescent Aggression and Violent Video Games: The role of moral disengagement and parental rearing patterns

description: Data for: Adolescent Aggression and Violent Video Games: The role of moral disengagement and parental rearing patterns boys=1, girls=2.
DOI: 10.6084/m9.figshare.5986783
title: On the continuity of quantifying floating algae of the Central West Atlantic between MODIS and VIIRS

description: Studying abundance and distributions of floating macroalgae such as pelagic <i>Sargassum</i> calls for long-term continuous and consistent observations from multiple satellite sensors. Previous studies mainly relied on observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) and the Medium Resolution Imaging Spectrometer (MERIS). As a follow-on sensor, the Visible Infrared Imager Radiometer Suite (VIIRS) also has the appropriate spectral bands to detect and quantify floating macroalgae. Based on previous works on MODIS, this study presents an improved procedure to extract floating algae pixels from VIIRS Alternative Floating Algae Index (AFAI) imagery, with image filtering used to suppress noise and adjusted thresholds used to mask sun glint, clouds, and cloud shadows. The overall extraction accuracy is about 85%. Simultaneous daily observations from MODIS and VIIRS over the Central West Atlantic (CWA) show consistent spatial patterns, but VIIRS estimations of the algae coverage (in km<sup>2</sup>) are consistently lower than MODIS (around – 19% mean relative difference or MRD), possibly due to lower sensitivity of the VIIRS near-infrared (NIR) bands than the corresponding MODIS bands. Similarly, at monthly scale VIIRS also shows lower coverage than MODIS, and their difference (around – 29% MRD) is larger than the difference between MODIS-Aqua and MODIS-Terra estimates (around – 14% MRD). Despite these differences, the spatial and temporal patterns between VIIRS and MODIS observed algae distributions match very well at all spatial and temporal scales. These results suggest that VIIRS can provide continuous and consistent observations of floating algae distributions and abundance from MODIS as long as their differences are accounted for, thus assuring continuity in the future. Furthermore, once <i>Sargassum</i> biomass per unit <i>Sargassum</i> area is determined from field measurements, conversion of these area estimates to <i>Sargassum</i> biomass is straightforward.
DOI: 10.6084/m9.figshare.5986783.v1
title: On the continuity of quantifying floating algae of the Central West Atlantic between MODIS and VIIRS

description: Studying abundance and distributions of floating macroalgae such as pelagic <i>Sargassum</i> calls for long-term continuous and consistent observations from multiple satellite sensors. Previous studies mainly relied on observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) and the Medium Resolution Imaging Spectrometer (MERIS). As a follow-on sensor, the Visible Infrared Imager Radiometer Suite (VIIRS) also has the appropriate spectral bands to detect and quantify floating macroalgae. Based on previous works on MODIS, this study presents an improved procedure to extract floating algae pixels from VIIRS Alternative Floating Algae Index (AFAI) imagery, with image filtering used to suppress noise and adjusted thresholds used to mask sun glint, clouds, and cloud shadows. The overall extraction accuracy is about 85%. Simultaneous daily observations from MODIS and VIIRS over the Central West Atlantic (CWA) show consistent spatial patterns, but VIIRS estimations of the algae coverage (in km<sup>2</sup>) are consistently lower than MODIS (around – 19% mean relative difference or MRD), possibly due to lower sensitivity of the VIIRS near-infrared (NIR) bands than the corresponding MODIS bands. Similarly, at monthly scale VIIRS also shows lower coverage than MODIS, and their difference (around – 29% MRD) is larger than the difference between MODIS-Aqua and MODIS-Terra estimates (around – 14% MRD). Despite these differences, the spatial and temporal patterns between VIIRS and MODIS observed algae distributions match very well at all spatial and temporal scales. These results suggest that VIIRS can provide continuous and consistent observations of floating algae distributions and abundance from MODIS as long as their differences are accounted for, thus assuring continuity in the future. Furthermore, once <i>Sargassum</i> biomass per unit <i>Sargassum</i> area is determined from field measurements, conversion of these area estimates to <i>Sargassum</i> biomass is straightforward.
DOI: 10.6084/m9.figshare.5986780
title: Deformation fabrics of glaucophane schists and implications for seismic anisotropy: the importance of lattice preferred orientation of phengite

description: Strong seismic anisotropy is observed in many subduction zones. This effect is attributed partly to subducting oceanic crust that is transformed into blueschist facies rocks. Because blueschist facies constituents such as glaucophane, epidote, and phengite show strong anisotropic elasticity, seismic anisotropy in subducting oceanic crust can be attributed to the lattice preferred orientation (LPO) of these minerals. We studied the deformation fabrics and seismic properties of phengite-rich epidote–glaucophane schists from the Franciscan Complex of Ring Mountain, California. The samples are composed mainly of glaucophane, epidote, and phengite. Some samples contain abundant phengite, the maximum being 40%. The LPOs of glaucophane showed that the [001] axes are aligned subparallel to lineation, and both (110) poles and [100] axes are aligned subnormal to foliation. The epidote [001] axes are aligned subnormal to foliation, with both (110) and (010) poles aligned subparallel to lineation. The LPOs of phengite are characterized by the maxima of [001] axes subnormal to foliation, and both (110) and (010) poles and [100] axes are aligned in a girdle subparallel to foliation. The phengite showed substantially strong seismic anisotropy (AV<sub>P</sub> = 42%, max.AV<sub>S</sub> = 37%). The glaucophane schist with abundant phengite showed significantly stronger seismic anisotropy (AV<sub>P</sub> = 30%, max.AV<sub>S</sub> = 23%) than the epidote–glaucophane schist (AV<sub>P</sub> = 13%, max.AV<sub>S</sub> = 9%). When the subduction angle of phengite-rich glaucophane schist is considered, the polarization direction of the fast S-waves for vertically propagating S-waves changed to a nearly trench-parallel direction for the subduction angle of 45‒60°, and the S-wave anisotropy became stronger for vertically propagating S-waves with increasing subduction angles. Our data showed that phengite-rich blueschist facies rock can therefore contribute to the strong trench-parallel seismic anisotropy occurring at the subducting oceanic crust and at the slab–mantle interface in many subduction zones.
DOI: 10.6084/m9.figshare.5986780.v1
title: Deformation fabrics of glaucophane schists and implications for seismic anisotropy: the importance of lattice preferred orientation of phengite

description: Strong seismic anisotropy is observed in many subduction zones. This effect is attributed partly to subducting oceanic crust that is transformed into blueschist facies rocks. Because blueschist facies constituents such as glaucophane, epidote, and phengite show strong anisotropic elasticity, seismic anisotropy in subducting oceanic crust can be attributed to the lattice preferred orientation (LPO) of these minerals. We studied the deformation fabrics and seismic properties of phengite-rich epidote–glaucophane schists from the Franciscan Complex of Ring Mountain, California. The samples are composed mainly of glaucophane, epidote, and phengite. Some samples contain abundant phengite, the maximum being 40%. The LPOs of glaucophane showed that the [001] axes are aligned subparallel to lineation, and both (110) poles and [100] axes are aligned subnormal to foliation. The epidote [001] axes are aligned subnormal to foliation, with both (110) and (010) poles aligned subparallel to lineation. The LPOs of phengite are characterized by the maxima of [001] axes subnormal to foliation, and both (110) and (010) poles and [100] axes are aligned in a girdle subparallel to foliation. The phengite showed substantially strong seismic anisotropy (AV<sub>P</sub> = 42%, max.AV<sub>S</sub> = 37%). The glaucophane schist with abundant phengite showed significantly stronger seismic anisotropy (AV<sub>P</sub> = 30%, max.AV<sub>S</sub> = 23%) than the epidote–glaucophane schist (AV<sub>P</sub> = 13%, max.AV<sub>S</sub> = 9%). When the subduction angle of phengite-rich glaucophane schist is considered, the polarization direction of the fast S-waves for vertically propagating S-waves changed to a nearly trench-parallel direction for the subduction angle of 45‒60°, and the S-wave anisotropy became stronger for vertically propagating S-waves with increasing subduction angles. Our data showed that phengite-rich blueschist facies rock can therefore contribute to the strong trench-parallel seismic anisotropy occurring at the subducting oceanic crust and at the slab–mantle interface in many subduction zones.
DOI: 10.6084/m9.figshare.5986708
title: Data set of Android permissions

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5986708.v1
title: Data set of Android permissions

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5986708.v2
title: Data set of Android permissionsPCA

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5986708.v3
title: Data set of Android permissions

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5986708.v4
title: Data set of Android permissions

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5986708.v5
title: Data set of Android permissions

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5986708.v7
title: Data set of Android permissions

description: This dataset contains 18,850 normal android application packages and 10,000 malware android packages which are used to identify the behaviour of malware application on permission they need at run-time.
DOI: 10.6084/m9.figshare.5985946
title: Additional file 4: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

description: DEGs and top TFs among groups and clusters. (XLSX 635 kb)
DOI: 10.6084/m9.figshare.5985946.v1
title: Additional file 4: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

description: DEGs and top TFs among groups and clusters. (XLSX 635 kb)
DOI: 10.6084/m9.figshare.5985940
title: Additional file 3: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

description: Cell information and classification. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.5985940.v1
title: Additional file 3: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

description: Cell information and classification. (XLSX 270 kb)
DOI: 10.6084/m9.figshare.5985931
title: Additional file 4: of The deregulated microRNAome contributes to the cellular response to aneuploidy

description: Table S3. Functional annotation clustering of hsa-miR-10a-5p targets. Complete results of the DAVID analysis of functional annotation clustering of hsa-miR-10a-5p target deregulation. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.5985931.v1
title: Additional file 4: of The deregulated microRNAome contributes to the cellular response to aneuploidy

description: Table S3. Functional annotation clustering of hsa-miR-10a-5p targets. Complete results of the DAVID analysis of functional annotation clustering of hsa-miR-10a-5p target deregulation. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.5985916
title: Additional file 2: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

description: Barcode-RT primer information, cell cycle gene list, and E-, M- and S-score gene list. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5985916.v1
title: Additional file 2: of Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

description: Barcode-RT primer information, cell cycle gene list, and E-, M- and S-score gene list. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5985910
title: Additional file 3: of The deregulated microRNAome contributes to the cellular response to aneuploidy

description: Table S2. Functional annotation clustering. Complete results of the DAVID analysis of functional annotation clustering of microRNAs targets deregulation. (XLSX 114Â kb)
DOI: 10.6084/m9.figshare.5985910.v1
title: Additional file 3: of The deregulated microRNAome contributes to the cellular response to aneuploidy

description: Table S2. Functional annotation clustering. Complete results of the DAVID analysis of functional annotation clustering of microRNAs targets deregulation. (XLSX 114Â kb)
DOI: 10.6084/m9.figshare.5985907
title: Additional file 1: of The negative effect of wood ant presence on tick abundance

description: Table S1. Description of all variables used in the statistical analysis. Table S2. Raw data. (XLSX 38.7 kb)
DOI: 10.6084/m9.figshare.5985907.v1
title: Additional file 1: of The negative effect of wood ant presence on tick abundance

description: Table S1. Description of all variables used in the statistical analysis. Table S2. Raw data. (XLSX 38.7 kb)