cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/spkde9
title: Description of a new species of the genus Cultellus Schumacher, 1817 (Bivalvia, Pharidae) from the South China Sea, based on integrative taxonomy

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yu, Yanan, Jiao, Yingyi, Zhang, Junlong (2024): Description of a new species of the genus Cultellus Schumacher, 1817 (Bivalvia, Pharidae) from the South China Sea, based on integrative taxonomy. Zoosystematics and Evolution 100 (2): 425-436, DOI: http://dx.doi.org/10.3897/zse.100.113972, URL: http://dx.doi.org/10.3897/zse.100.113972
DOI: 10.15468/zhva9m
title: A new endemic freshwater mussel (Bivalvia, Unionidae) genus and species, Ligodonta obscura, from the Yadkin-Pee Dee River drainage in North Carolina, USA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Perkins, Michael A., DeVilbiss, Katharine L., Whelan, Nathan V., Hoch, Rachael A., Jones, Brena K., Mays, Jason W., Evans, Heather K., Benfield, Sierra B. (2025): A new endemic freshwater mussel (Bivalvia, Unionidae) genus and species, Ligodonta obscura, from the Yadkin-Pee Dee River drainage in North Carolina, USA. ZooKeys 1248: 245-265, DOI: 10.3897/zookeys.1248.152952AbstractWe describe a new genus and species of freshwater mussel, Ligodonta obscura gen. et sp. nov., using an integrative taxonomic approach consisting of morphological, genetic, biogeographic, and life history information. Specimens of L. obscura are poorly represented in historic collections and were infrequently collected; additionally, the species was originally overlooked as a unique taxon due in part to its small size and superficial morphologic similarities to Lasmigona subviridis (Conrad, 1835) and Alasmidonta spp. Phylogenetic results place the new species sister to, but consistently distinct from, Alasmidonta s. s. We offer a suite of field-ready diagnostics to differentiate L. obscura from similar and co-occurring species and briefly discuss the species’ unique phylogenetic placement, which warrants the recognition of a new genus. Importantly, L. obscura appears to be a “ microendemic ” species with a remarkably limited documented range of approximately 13 km within two small, adjacent watersheds of the Yadkin-Pee Dee River drainage. Despite intensive surveys, the extant population is currently known from an approximately 7 km contiguous reach of one stream, making this newly-discovered species a high conservation priority.
DOI: 10.15468/qcmebk
title: A new species of the genus Amolops (Amphibia: Ranidae) and the first national record of Amolops vitreus from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wu, Yun-He, Yu, Zhong-Bin, Lu, Chen-Qi, Zhang, Yin-Peng, Dong, Wen-Jie, Liu, Xiao-Long, Kilunda, Felista Kasyoka, Xiong, Yun, Jiang, Yun-Fang, Ouyang, Hong, Fu, Zhong-Xiong, He, Yun-Biao, Yuan, Zhi-Yong, Che, Jing (2024): A new species of the genus Amolops (Amphibia: Ranidae) and the first national record of Amolops vitreus from China. Vertebrate Zoology 74: 343-357, DOI: http://dx.doi.org/10.3897/vz.74.e108013, URL: http://dx.doi.org/10.3897/vz.74.e108013
DOI: 10.15468/dl.xf5u2j
title: Occurrence Download

description: A dataset containing 1366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Escarabajos coprófagos, mariposas y hormigas de la Ecoreserva Apiay (Villavicencio, Meta) - Proyecto Ecoreservas"
 ]
}

 The dataset includes 1366 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042748-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rypuv
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siphonops paulensis Boettger, 1892"
 ]
}

 The dataset includes 62 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005137-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dzd5c
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Taxonomic diversity and abundance of enchytraeids (Annelida: Clitellata: Enchytraeida) in the Northern Palaearctic. 1. Asian part",
 "TaxonKey is Cognettia lapponica Nurminen, 1965"
 ]
}

 The dataset includes 131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005903-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b77wtp
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria gollmeri Schltr."
 ]
}

 The dataset includes 86 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005137-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkvyq8
title: Occurrence Download

description: A dataset containing 58347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UWBM Mammalogy Collection (Arctos)"
 ]
}

 The dataset includes 58347 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042765-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wymkr5
title: Occurrence Download

description: A dataset containing 1599 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oryzomys melanotis Thomas, 1893"
 ]
}

 The dataset includes 1599 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005136-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8uyqwx
title: Occurrence Download

description: A dataset containing 1143 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Polypodiales",
 "TaxonKey is Ophioglossales",
 "TaxonKey is Marattiales",
 "TaxonKey is Cyatheales",
 "TaxonKey is Osmundales",
 "TaxonKey is Hymenophyllales",
 "TaxonKey is Selaginellales",
 "TaxonKey is Lycopodiales",
 "TaxonKey is Salviniales",
 "TaxonKey is Isoetales",
 "TaxonKey is Gleicheniales",
 "TaxonKey is Psilotales",
 "TaxonKey is Schizaeales",
 "TaxonKey is Equisetales"
 ]
 },
 "Country is Namibia"
 ]
}

 The dataset includes 1143 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005137-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gm4h6u
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Poospiza hypocondria (d'Orbigny & Lafresnaye, 1837)"
 ]
}

 The dataset includes 176 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052307-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jmcgj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudonezumia flagellicauda (Koefoed, 1927)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080893-200613084148143/datasets/export for details.
DOI: 10.15468/dl.qdu4dg
title: Occurrence Download

description: A dataset containing 7750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-129.94629 20.39063,-62.70996 20.39063,-62.70996 52.11914,-129.94629 52.11914,-129.94629 20.39063))",
 "TaxonKey is Ailanthus altissima (Mill.) Swingle"
 ]
}

 The dataset includes 7750 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071607-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tt5bnv
title: Occurrence Download

description: A dataset containing 25250 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence"
 ]
 },
 "Country is Bolivia (Plurinational State of)",
 "Geometry POLYGON((-62.52418 -16.6236,-59.51078 -16.6236,-59.51078 -13.06413,-62.52418 -13.06413,-62.52418 -16.6236))",
 "HasGeospatialIssue is false",
 "TaxonKey is Magnoliopsida"
 ]
}

 The dataset includes 25250 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016786-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/bg92x53rk4.1
title: Naive pluripotent stem cell-based models capture FGF-dependent human hypoblast lineage specification.

description: 10X processed scRNA-seq matrices and H5 files from Cell Ranger pipeline for Dattani et al. (2024), Cell Stem Cell: "Naive pluripotent stem cell-based models capture FGF-dependent human hypoblast lineage specification".

Sequencing was performed on Novaseq 6000, generating paired end reads (28x10x10x90 bases). Sample demultiplexing, alignment, and quantification of barcode counts was performed using Cell Ranger Multi. Cell Ranger .h5 files from individual samples are attached in this dataset together with a .xls containing sample information. 

Scanpy was used to read and analyse raw read counts from the Cell Ranger output. Cells expressing fewer than 15,000 counts, more than 100,0000 counts, or more than 15% mitochondrial reads were filtered out. The resultant count matrix was normalised and log-transformed using reciple_zheng_17. The top 1000 highly variable genes were identified for initial dimensionality reduction with PCA prior to non-linear dimensionality reduction using UMAP. Cells visualised in UMAP plots were coloured according to individual marker gene expression values, and the Leiden algorithm (resolution 0.8) was used to identify cell clusters. Outlier clusters were discarded that likely corresponded to Mouse Embryonic Fibroblasts (DR4 MEFs) or contained dying cells with &gt;~12% mitochondrial reads. 

Attached are two .h5ad.gz files contain normalised counts matrices used for producing UMAPs in Fig1 and Fig5 of doi: https://doi.org/10.1101/2023.11.30.569161. Also included are H5 files from Cell Ranger output. 

For any questions regarding this data, please email: a.dattani@exeter.ac.uk or g.guo@exeter.ac.uk.
DOI: 10.15468/dl.avqgrr
title: Occurrence Download

description: A dataset containing 672968 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corylus avellana L."
 ]
}

 The dataset includes 672968 records from 1034 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088157-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34cgqp
title: Occurrence Download

description: A dataset containing 4628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus molossus Baird & Girard, 1853"
 ]
}

 The dataset includes 4628 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065686-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvwumw
title: Occurrence Download

description: A dataset containing 7893 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Kazakhstan",
 "Country is Kyrgyzstan",
 "Country is Uzbekistan",
 "Country is Tajikistan"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Malus sieversii (Ledeb.) Roem."
 ]
}

 The dataset includes 7893 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066542-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpkhmm
title: Occurrence Download

description: A dataset containing 3237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pittosporum tenuifolium Gaertn."
 ]
}

 The dataset includes 3237 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008016-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btztqc
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Phenological Center - Plants (Kaliningrad)"
 ]
}

 The dataset includes 190 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006748-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrfoml
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiropterotriton terrestris (Taylor, 1941)"
 ]
}

 The dataset includes 159 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007805-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uydy3i
title: Occurrence Download

description: A dataset containing 768 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panicum maximum Nees, 1841"
 ]
}

 The dataset includes 768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008016-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4iejdz
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Astragalus gummifer Labill.",
 "TaxonKey is Acacia nilotica subsp. indica (Benth.) Brenan"
 ]
}

 The dataset includes 306 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009458-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9bsx5c
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Nelumbo nucifera subsp. lutea (Willd.) Borsch & Barthlott"
 ]
}

 The dataset includes 122 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012550-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ifjh7r
title: Occurrence Download

description: A dataset containing 412973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Pinus sylvestris L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 412973 records from 617 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008016-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sa3gf5
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Senecio integrifolius Kern., 1871)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014324-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebbxja
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Georgia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025829-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.l78cwih9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (26 records)
DOI: 10.15468/dl.xqdmd5
title: Occurrence Download

description: A dataset containing 101259586 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chordata",
 "Country is Sweden",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 101259586 records from 285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025787-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhgwc6
title: Occurrence Download

description: A dataset containing 10866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10866 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025832-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3wgak
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025833-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfd6j9
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Hungary",
 "HasCoordinate is true"
 ]
}

 The dataset includes 210 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025834-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmgzgw
title: Occurrence Download

description: A dataset containing 836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ludwigia hyssopifolia",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 836 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025831-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8r4gt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025835-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqqhb4
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 40 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025836-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3nbxt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oxalis corniculata",
 "Country is Korea (Democratic People’s Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025837-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.896kyc
title: Occurrence Download

description: A dataset containing 25132418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Geometry POLYGON((-180 -58,180 -58,180 84,-180 84,-180 -58))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "Month is one of (April, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year is 2018"
 ]
}

 The dataset includes 25132418 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025748-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfpdhx
title: Occurrence Download

description: A dataset containing 92404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schedonorus arundinaceus",
 "Year 1975-2024"
 ]
}

 The dataset includes 92404 records from 1135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025723-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qx8ek
title: Occurrence Download

description: A dataset containing 2417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ludwigia octovalvis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2417 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025838-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.