cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19445759
title: Additional file 1 of BarWare: efficient software tools for barcoded single-cell genomics

description: Additional file 1: Table S1. HTO category agreement across wells. Fraction of agreement of cell barcode assignment to each HTO category for each pooled sample well based on BarCounter and CITE-seq-Count processing. Well: Pooled sample well. Frac_singlet: Fraction of singlet calls that agree using BarCounter and CITE-seq-Count. Frac_doublet: Fraction of doublet calls that agree using BarCounter and CITE-seq-Count. Frac_multiplet: Fraction of multiplet calls that agree using BarCounter and CITE-seq-Count. Frac_no-hash: Fraction of no hash detected calls that agree using BarCounter and CITE-seq-Count.
DOI: 10.6084/m9.figshare.19445707
title: Additional file 4 of An 8-gene machine learning model improves clinical prediction of severe dengue progression

description: Additional file 4: Table S2. Clinical data, expression of genes in 8- and 20-gene signatures, and 8-gene XGBoost model predicted probabilities for patients in the Colombia cohort.
DOI: 10.6084/m9.figshare.19445677
title: Additional file 1 of Nationwide comprehensive epidemiological study of rare diseases in Japan using a health insurance claims database

description: Additional file 1. The tabular datasets derived from the National Database of Health Insurance Claims and Specific Health Checkups of Japan.
DOI: 10.6084/m9.figshare.19443284.v2
title: Translated proteins of parasitized host hemocytes

description: We performed proteomic analyses to identify the translated proteins of <i>Spodoptera litura </i>hemocytes triggered by eIF5A hypusination under <i>Microplitis bicoloratus</i> parasitization. iTRAQ was performed using hemocytes to get two proteomes, M and S (M: Parasitized hemocytes; S: Non-parasitized hemocytes).
DOI: 10.6084/m9.figshare.19443284
title: Translated proteins of parasitized host hemocytes

description: We performed proteomic analyses to identify the translated proteins of <i>Spodoptera litura </i>hemocytes triggered by eIF5A hypusination under <i>Microplitis bicoloratus</i> parasitization. iTRAQ was performed using hemocytes to get two proteomes, M and S (M: Parasitized hemocytes; S: Non-parasitized hemocytes).
DOI: 10.6084/m9.figshare.19443284.v1
title: Translated proteins of parasitized host hemocytes

description: We performed proteomic analyses to identify the translated proteins of <i>Spodoptera litura </i>hemocytes triggered by eIF5A hypusination under <i>Microplitis bicoloratus</i> parasitization. iTRAQ was performed using hemocytes to get two proteomes, M and S (M: Parasitized hemocytes; S: Non-parasitized hemocytes).
DOI: 10.6084/m9.figshare.19445639
title: Additional file 5 of Use of novel lab assays to examine the effect of pyrethroid-treated bed nets on blood-feeding success and longevity of highly insecticide-resistant Anopheles gambiae s.l. mosquitoes

description: Additional file 5: Table B. Statistical analysis summaries.
DOI: 10.14457/cu.the.2014.1610
title: Sugar evolution by microbial hydrolysis of corncob and sugarcane bagasse : effect of steam-explosion pretreatment
DOI: 10.14457/cu.the.2014.1611
title: Time based fractionation of asphaltenes
DOI: 10.6084/m9.figshare.19445636
title: Additional file 4 of Use of novel lab assays to examine the effect of pyrethroid-treated bed nets on blood-feeding success and longevity of highly insecticide-resistant Anopheles gambiae s.l. mosquitoes

description: Additional file 4: Table C. Scripts of the statistical analysis in Rstudio.
DOI: 10.14457/cu.the.2014.1612
title: Catalytic pyrolysis of waste tire using Cobalt and Iron modified catalysts
DOI: 10.14457/cu.the.2014.1613
title: Catalytic dehydration of Bio-ethanol to hydrocarbons : oxides of P, Sb, and Bi
DOI: 10.5281/zenodo.6337626
title: AWI-CM3 version 3.0 spinup simulation data

description: Spinup simulation output from AWI-CM3 version 3.0 Years: 1850-2549 Frequency: Annual means Variables: SSR: Surface solar radiation STR: Surface thermal radiation TSR: Top solar radiation TTR: Top thermal radiation SLHF: Surface latent heat flux SSHF: Surface sensible heat flux a_ice: sea ice concentration (on ocean mesh) m_ice: sea ice mass per unit area temp: 3D ocean temperature
DOI: 10.6084/m9.figshare.19445612
title: Additional file 1 of Findings from precision oncology in the clinic: rare, novel variants are a significant contributor to scaling molecular diagnostics

description: Additional file 1. Table S1: Excel worksheet of panel attributes.
DOI: 10.6084/m9.figshare.19445497
title: Additional file 4 of Locus specific reduction of L1 expression in the cortices of individuals with amyotrophic lateral sclerosis

description: Additional file 4: Table S4. Coordinates and insertion allele frequencies of polymorphic intact and non-intact L1s identified in the Target ALS cohort.
DOI: 10.6084/m9.figshare.19445491
title: Additional file 2 of Locus specific reduction of L1 expression in the cortices of individuals with amyotrophic lateral sclerosis

description: Additional file 2: Table S2. Coordinates of intact and non-intact expressed L1 loci.
DOI: 10.6084/m9.figshare.19445488
title: Additional file 1 of Locus specific reduction of L1 expression in the cortices of individuals with amyotrophic lateral sclerosis

description: Additional file 1: Table S1. Covariates used in the statistical analysis comparing total intact and non-intact L1 expression for each tissue.
DOI: 10.6084/m9.figshare.19445479
title: Additional file 2 of Whole-genome sequencing as an investigational device for return of hereditary disease risk and pharmacogenomic results as part of the All of Us Research Program

description: Additional file 2. Reportable region in bed format.
DOI: 10.6084/m9.figshare.19367729
title: Supplementary Material for: Effects of using epidural analgesia during delivery on maternal and infant outcomes

description: Objectives: To estimate the impact of epidural analgesia (EA) during delivery on maternal and infant outcomes. Design: This study was a prospective cohort study. Participants: In total, 159 pregnant women in Women and Children’s Hospital, School of Medicine, Xiamen university from Nov. 2019 to May 2020. Patients were randomly divided into EA group (n=80) and no analgesia group (n=79). Methods: The duration of labor, levels of umbilical arterial blood gas [pH and partial pressure oxygen (PaO2)], VAS, adverse events were evaluated to compare differences between EA group and no analgesia group, respectively. Results: The duration of the first stage of labor was shorted in the total stage (P=0.002) and the first stage of labor (P=0.001) in EA group compared with no analgesia group. The second stage of labor and third stage of labor, levels of umbilical arterial blood gas and 1min Apgar score in neonates were similar in EA and no analgesia groups (All P&gt;0.05). After adjusting age, pre-pregnancy BMI, and past and present medical history, the VAS was low in EA group compared with no analgesia group when the uterine orifice was completely open [odds ratio (OR)=0.001, 95% confidence interval (CI):0.001-0.002], 8h post-delivery (OR=0.508, 95%CI:0.264-0.977) and 24h post-delivery (OR=0.321, 95%CI:0.167-0.617). EA increased the proportion of adverse events occurring 5 min post-delivery (χ2=10.137, P=0.001), while decreased the proportion of adverse events occurring 24h post-delivery (χ2=4.750, P=0.029). Limitations: In terms of the effects of EA on neonates, we only measured the 1 min Apgar score of neonates. Conclusions: EA might be a promising pain relief method for pregnant women. The results of our study might give a reference for the use of EA during delivery in clinic.
DOI: 10.5281/zenodo.6384439
title: Ischia cGPS Daily Timeseries (2001-2019)

description: Daily positions time series for the 7 Ischia cGPS stations from January 2001 to December 2019. A full description of cGPS time series analysis is reported in:<br> - De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725. Please cite this when using the dataset.
DOI: 10.5281/zenodo.6384438
title: Ischia cGPS Daily Timeseries (2001-2019)

description: Daily positions time series for the 7 Ischia cGPS stations from January 2001 to December 2019. A full description of cGPS time series analysis is reported in:<br> - De Martino P, Dolce M, Brandi G, Scarpato G, Tammaro U (2021). The Ground Deformation History of the Neapolitan Volcanic Area (Campi Flegrei Caldera, Somma–Vesuvius Volcano, and Ischia Island) from 20 Years of Continuous GPS Observations (2000–2019). Remote Sensing. 13(14):2725. doi:10.3390/rs13142725. Please cite this when using the dataset.
DOI: 10.6084/m9.figshare.19446749
title: Supplementary Material for: The Use of Pan-Tropomyosin Receptor Kinase Immunohistochemistry as a Screening Tool for the Detection of Neurotrophic Tropomyosin-Related Kinase Fusions: Real-World Data from a National Multicentric Retrospective Study

description: <b><i>Introduction:</i></b> The neurotrophic tropomyosin-related kinase (<i>NTRK</i>) genes encode the tropomyosin receptor kinases (TRKs). Patients with solid tumors harboring an oncogenic <i>NTRK</i> fusion are eligible for treatment with TRK inhibitors. <i>NTRK</i> fusion is often associated with TRK overexpression. Pan-TRK immunohistochemistry (IHC) is used to screen for <i>NTRK</i> fusions, but immunoreactivity patterns are poorly defined. <b><i>Methods:</i></b> Data on pan-TRK immunoreactivity patterns in 2,669 solid tumors (comprising carcinomas, sarcomas, and melanocytic lesions) were retrospectively collected by nine laboratories and comprised tumor type, percentage of pan-TRK-positive tumor cells, staining intensity, cytoplasmic, membrane and/or nuclear staining pattern, and the presence or absence of <i>NTRK</i> fusion. <b><i>Results:</i></b> Overall, 2,457 tumors (92%) were pan-TRK negative and 212 neoplasms (8%) were pan-TRK positive. Twenty-two pan-TRK-positive tumors (0.8%) harbored an <i>NTRK</i> fusion, representing 10% of all pan-TRK-positive tumors. Cytoplasmic immunoreactivity was most often observed, followed by membrane immunoreactivity. Nuclear pan-TRK positivity was least frequent, but was most often (33%) associated with <i>NTRK</i> fusion. <b><i>Conclusion:</i></b> Pan-TRK IHC can be used to screen for <i>NTRK</i> fusions, especially in commonly diagnosed solid tumors with low <i>NTRK</i> fusion prevalence. In case of pan-TRK immunoreactivity, regardless of its intensity and tumor cell percentage, subsequent molecular tests should be performed to formally confirm the presence or absence of <i>NTRK</i> fusions.
DOI: 10.6084/m9.figshare.19446749.v1
title: Supplementary Material for: The Use of Pan-Tropomyosin Receptor Kinase Immunohistochemistry as a Screening Tool for the Detection of Neurotrophic Tropomyosin-Related Kinase Fusions: Real-World Data from a National Multicentric Retrospective Study

description: <b><i>Introduction:</i></b> The neurotrophic tropomyosin-related kinase (<i>NTRK</i>) genes encode the tropomyosin receptor kinases (TRKs). Patients with solid tumors harboring an oncogenic <i>NTRK</i> fusion are eligible for treatment with TRK inhibitors. <i>NTRK</i> fusion is often associated with TRK overexpression. Pan-TRK immunohistochemistry (IHC) is used to screen for <i>NTRK</i> fusions, but immunoreactivity patterns are poorly defined. <b><i>Methods:</i></b> Data on pan-TRK immunoreactivity patterns in 2,669 solid tumors (comprising carcinomas, sarcomas, and melanocytic lesions) were retrospectively collected by nine laboratories and comprised tumor type, percentage of pan-TRK-positive tumor cells, staining intensity, cytoplasmic, membrane and/or nuclear staining pattern, and the presence or absence of <i>NTRK</i> fusion. <b><i>Results:</i></b> Overall, 2,457 tumors (92%) were pan-TRK negative and 212 neoplasms (8%) were pan-TRK positive. Twenty-two pan-TRK-positive tumors (0.8%) harbored an <i>NTRK</i> fusion, representing 10% of all pan-TRK-positive tumors. Cytoplasmic immunoreactivity was most often observed, followed by membrane immunoreactivity. Nuclear pan-TRK positivity was least frequent, but was most often (33%) associated with <i>NTRK</i> fusion. <b><i>Conclusion:</i></b> Pan-TRK IHC can be used to screen for <i>NTRK</i> fusions, especially in commonly diagnosed solid tumors with low <i>NTRK</i> fusion prevalence. In case of pan-TRK immunoreactivity, regardless of its intensity and tumor cell percentage, subsequent molecular tests should be performed to formally confirm the presence or absence of <i>NTRK</i> fusions.
DOI: 10.6084/m9.figshare.19445461
title: Additional file 2 of Composition and short-term stability of gut microbiota in lean and spontaneously overweight healthy Labrador retriever dogs

description: Additional file 2. Raw data of all dogs: BCS, OTU, IndVal, Similarity index, Diversity, Phyla, Families and Genera.
DOI: 10.5281/zenodo.6392555
title: Uralic Typological database - UraTyp

description: Miina Norvik, Yingqi Jing, Michael Dunn, Robert Forkel, Terhi Honkola, Gerson Klumpp, Richard Kowalik, Helle Metslang, Karl Pajusalu, Minerva Piha, Eva Saar, Sirkka Saarinen and Outi Vesakoski (ms. 2021) Uralic typology in the light of new comprehensive data sets (submitted to Journal of Uralic Linguistics)The status of the manuscript will be updated here and at https://bedlan.net/.
DOI: 10.5281/zenodo.5236365
title: Uralic Typological database - UraTyp

description: Miina Norvik, Yingqi Jing, Michael Dunn, Robert Forkel, Terhi Honkola, Gerson Klumpp, Richard Kowalik, Helle Metslang, Karl Pajusalu, Minerva Piha, Eva Saar, Sirkka Saarinen and Outi Vesakoski (ms. 2021) Uralic typology in the light of new comprehensive data sets (submitted to Journal of Uralic Linguistics)The status of the manuscript will be updated here and at https://bedlan.net/.
DOI: 10.6084/m9.figshare.19445314
title: Additional file 2 of Usability evaluation of the Computer-Based Health Evaluation System (CHES) eDiary for patients with faecal incontinence: a pilot study

description: Additional file 2: Appendix 3. Anonymized dataset used in the publication.
DOI: 10.6084/m9.figshare.19445288
title: Additional file 3 of Novel biallelic USH2A variants in a patient with usher syndrome type IIA- a case report

description: Additional file 3.
DOI: 10.6084/m9.figshare.19445285
title: Additional file 2 of Novel biallelic USH2A variants in a patient with usher syndrome type IIA- a case report

description: Additional file 2.
DOI: 10.6084/m9.figshare.19445282
title: Additional file 1 of Novel biallelic USH2A variants in a patient with usher syndrome type IIA- a case report

description: Additional file 1.
DOI: 10.6084/m9.figshare.19445275
title: Additional file 3 of Risk factors for progression of Urolith Associated with Obstructive Urosepsis to severe sepsis or septic shock

description: Additional file 3. Original data.
DOI: 10.6084/m9.figshare.19445272
title: Additional file 2 of Risk factors for progression of Urolith Associated with Obstructive Urosepsis to severe sepsis or septic shock

description: Additional file 2. Table legend.
DOI: 10.6084/m9.figshare.17193089
title: Psychological Flow Scale - Data

description: Psychological Flow Scale - Data from 900+ people regarding a new flow instrument
DOI: 10.6084/m9.figshare.17193089.v2
title: Psychological Flow Scale - Data

description: Psychological Flow Scale - Data from 900+ people regarding a new flow instrument
DOI: 10.6084/m9.figshare.17193089.v1
title: Psychological Flow Scale - DataUntitled Item

description: Psychological Flow Scale - Data from 900+ people regarding a new flow instrument
DOI: 10.6084/m9.figshare.17213276.v1
title: Current-day distribution of the rinkhals (<i>Hemachatus haemachatus</i>) in central South Africa and Lesotho: An evaluation based mainly on photographic and videographic records from social media

description: The rinkhals (<i>Hemachatus haemachatus</i>) is a well-known venomous elapid found in greater South Africa and the eastern highlands of Zimbabwe. To evaluate its current-day (mostly 2012–2021) distribution in central South Africa and Lesotho, we examined various media sources, including Facebook, for photographic and videographic records. Records were posted or shared to a Facebook group <i>Free State Reptiles and Amphibians (including adjacent areas and Lesotho)</i> and saved electronically for future reference. In total we accumulated 208 Facebook records for 152 unique localities. Several localities were vague or broad, and therefore most of the original submitters of records were contacted in an attempt to confirm or refine them. Of the 139 individuals contacted, 68 (49%) responded regarding 96 records and they either confirmed the given locality names, could not add to the information, or refined them. In total, 131 (63%) of the 208 Facebook records were confirmed/verified and were thus usable for plotting on maps. The 131 records represent 86% of all verified media records, whereas only 14% (21 records) are from platforms such as iNaturalist, iSpot and ReptileMAP. All verified media records, together with literature and unpublished museum records, were plotted on a map. Our evaluation, based on verified records, showed that the rinkhals still occurs widely in the northern, central and eastern Free State Province, and several new records extend its known range westwards in central South Africa. New records indicate that it still occurs in western Lesotho, as well as the Maluti Mountains in the north of this country. Our study is the first to make extensive use of Facebook records for evaluating the distribution of a southern African reptile. We contend that a large body of photographic and videographic records for reptiles and amphibians exists on social networking sites, such as Facebook, and proper evaluation and documentation of these records can contribute significantly to knowledge of present-day species distributions.
DOI: 10.6084/m9.figshare.17213276
title: Current-day distribution of the rinkhals (<i>Hemachatus haemachatus</i>) in central South Africa and Lesotho: An evaluation based mainly on photographic and videographic records from social media

description: The rinkhals (<i>Hemachatus haemachatus</i>) is a well-known venomous elapid found in greater South Africa and the eastern highlands of Zimbabwe. To evaluate its current-day (mostly 2012–2021) distribution in central South Africa and Lesotho, we examined various media sources, including Facebook, for photographic and videographic records. Records were posted or shared to a Facebook group <i>Free State Reptiles and Amphibians (including adjacent areas and Lesotho)</i> and saved electronically for future reference. In total we accumulated 208 Facebook records for 152 unique localities. Several localities were vague or broad, and therefore most of the original submitters of records were contacted in an attempt to confirm or refine them. Of the 139 individuals contacted, 68 (49%) responded regarding 96 records and they either confirmed the given locality names, could not add to the information, or refined them. In total, 131 (63%) of the 208 Facebook records were confirmed/verified and were thus usable for plotting on maps. The 131 records represent 86% of all verified media records, whereas only 14% (21 records) are from platforms such as iNaturalist, iSpot and ReptileMAP. All verified media records, together with literature and unpublished museum records, were plotted on a map. Our evaluation, based on verified records, showed that the rinkhals still occurs widely in the northern, central and eastern Free State Province, and several new records extend its known range westwards in central South Africa. New records indicate that it still occurs in western Lesotho, as well as the Maluti Mountains in the north of this country. Our study is the first to make extensive use of Facebook records for evaluating the distribution of a southern African reptile. We contend that a large body of photographic and videographic records for reptiles and amphibians exists on social networking sites, such as Facebook, and proper evaluation and documentation of these records can contribute significantly to knowledge of present-day species distributions.
DOI: 10.6084/m9.figshare.15183495.v7
title: Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease

description: Summary statistic data of eGFRcrea GWAS, kidney eQTL and kidney mQTL data<br>Kidney mQTL mapping was performed based on genotype and DNA methylation data of kidney samples from 443 trans-ancestry individuals (79% are of European ancestry). The significance of the top associated variants per CpG was estimated by adaptive permutation in FastQTL using the covariates above and the setting “--permute 1000”. Beta distribution-adjusted empirical p-values from FastQTL were used to calculate q-values using Storey’s q method, and a false discovery rate (FDR) threshold of ≤0.01 was applied to identify CpGs with a significant mQTL. Totally, we identified 139,313 mCpGs and 13,771,378 significant SNP-mCpG pairs<br>eGFRcrea GWAS meta-analysis was performed in 1,508,659 trans-ancestry individuals (80% are of European ancestry) by integrating five GWAS studies. We identified 90,950 variants showing genome wide significant (p &lt; 5E-8) association with eGFRcrea.<br>Kidney eQTL meta-analysis was performed in 686 trans-ancestry individuals (72% are of European ancestry) by integrating four eQTL studies. To define eGenes, we used the Storey approach to calculate q values for all associations for each gene. With significant q value (&lt; 0.01), we identified 10,430 eGenes and 1,222,250 significant SNP-gene pairs.<br><br>
DOI: 10.34820/fk2/uyhskd/sbbnpz
title: AJTM (Astri & Ina, 2021).pdf

description: :unav