cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21602058.v1
title: Additional file 13 of Molecular intrinsic subtypes, genomic, and immune landscapes of BRCA-proficient but HRD-high ER-positive/HER2-negative early breast cancers

description: Additional file 13: Supplemental file 1: Presentation of the five meta-genes used: IFN-γ, immune checkpoints (ICK), cytotoxicity (CYTOX), Th1 orientation (Th1) and cytotoxic lymphocytes (CTL).
DOI: 10.6084/m9.figshare.21602061
title: Additional file 14 of Molecular intrinsic subtypes, genomic, and immune landscapes of BRCA-proficient but HRD-high ER-positive/HER2-negative early breast cancers

description: Additional file 14: Supplemental file 2: The HRD score and BRCA 1/2 mutation status were used to categorize patients into three groups: patients with a BRCA 1/2 mutation comprised the mutated group, patients wild-type for BRCA 1/2 with a low (≤ 42) (or high &gt; 42) HRD score were respectively classed in the WT HRD-low (WT HRD-high) group.
DOI: 10.6084/m9.figshare.21602061.v1
title: Additional file 14 of Molecular intrinsic subtypes, genomic, and immune landscapes of BRCA-proficient but HRD-high ER-positive/HER2-negative early breast cancers

description: Additional file 14: Supplemental file 2: The HRD score and BRCA 1/2 mutation status were used to categorize patients into three groups: patients with a BRCA 1/2 mutation comprised the mutated group, patients wild-type for BRCA 1/2 with a low (≤ 42) (or high &gt; 42) HRD score were respectively classed in the WT HRD-low (WT HRD-high) group.
DOI: 10.6084/m9.figshare.21602092
title: Additional file 2 of Birth preparedness and complication readiness among husbands and its association with skilled birth attendance in southern Ethiopia

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.21602092.v1
title: Additional file 2 of Birth preparedness and complication readiness among husbands and its association with skilled birth attendance in southern Ethiopia

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.21602095
title: Additional file 3 of Birth preparedness and complication readiness among husbands and its association with skilled birth attendance in southern Ethiopia

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.21602095.v1
title: Additional file 3 of Birth preparedness and complication readiness among husbands and its association with skilled birth attendance in southern Ethiopia

description: Supplementary Material 3
DOI: 10.6069/aad8-s670
title: Multisite proteome provides insights into the biology and prognostic markers for head and neck cancer

description: The poor prognosis of head and neck cancer (HNC) is largely associated with the presence of metastasis in the lymph nodes (LN). Herein, the proteome of 140 multisite samples from a 59-HNC patient cohort, including primary and matched LN tissues, saliva, and blood cells, reveals insights into the biology and potential metastasis biomarkers that may assist in clinical decision making. The protein profiles are strictly associated with immune modulation across datasets, which provided the basis to investigate immune markers associated with metastasis. The proteome of LN metastasis cells quite recapitulates the proteome of primary sites. Conversely, the LN microenvironment proteome highlights candidate markers. By integrating selected markers at peptide, protein, and transcript levels with machine learning models, we indicate a nodal metastasis signature in blood and saliva. In summary, we present the deepest proteome characterization of multiple sampling sites in HNC, providing a promising basis to understand tumoral biology and indicating metastasis-associated biomarkers.
DOI: 10.6084/m9.figshare.21602187.v1
title: Additional file 2 of Protein arginine deiminase 2 (PAD2) modulates the polarization of THP-1 macrophages to the anti-inflammatory M2 phenotype

description: Additional file 2: Supplemental Table 1 A. Differentially expressed proteins in THP-1 macrophages treated with BB-Cl-amidine as compared to control group (q &lt; 0.05, n = 5). Supplemental Table 1 B. Differentially expressed proteins in THP-1 macrophages treated with LPS as compared to control group (q &lt; 0.05, n = 5). Supplemental Table 1 C. Differentially expressed proteins in THP-1 macrophages treated with IL-4 as compared to control group (q &lt; 0.05, n = 5). Supplemental Table 1 D. Differentially expressed proteins in THP-1 macrophages treated with LPS and BB-Cl-amidine as compared to LPS group (q &lt; 0.05, n = 5). Supplemental Table 1 E. Differentially expressed proteins in THP-1 macrophages treated with IL-4 and BB-Cl-amidine as compared to IL-4 group (q &lt; 0.05, n = 5).
DOI: 10.6084/m9.figshare.21602187
title: Additional file 2 of Protein arginine deiminase 2 (PAD2) modulates the polarization of THP-1 macrophages to the anti-inflammatory M2 phenotype

description: Additional file 2: Supplemental Table 1 A. Differentially expressed proteins in THP-1 macrophages treated with BB-Cl-amidine as compared to control group (q &lt; 0.05, n = 5). Supplemental Table 1 B. Differentially expressed proteins in THP-1 macrophages treated with LPS as compared to control group (q &lt; 0.05, n = 5). Supplemental Table 1 C. Differentially expressed proteins in THP-1 macrophages treated with IL-4 as compared to control group (q &lt; 0.05, n = 5). Supplemental Table 1 D. Differentially expressed proteins in THP-1 macrophages treated with LPS and BB-Cl-amidine as compared to LPS group (q &lt; 0.05, n = 5). Supplemental Table 1 E. Differentially expressed proteins in THP-1 macrophages treated with IL-4 and BB-Cl-amidine as compared to IL-4 group (q &lt; 0.05, n = 5).
DOI: 10.6084/m9.figshare.21602190
title: Additional file 3 of Protein arginine deiminase 2 (PAD2) modulates the polarization of THP-1 macrophages to the anti-inflammatory M2 phenotype

description: Additional file 3: Supplemental Table 2 A. Differentially expressed proteins in THP-1 macrophages with silenced PAD2 as compared to scrambled siRNA control group (q &lt; 0.05, n = 6). Supplemental Table 2 B. Differentially expressed proteins in THP-1 macrophages with silenced PAD2 and treated with LPS as compared to scrambled siRNA control group treated with LPS (q &lt; 0.05, n = 6).
DOI: 10.6084/m9.figshare.21602190.v1
title: Additional file 3 of Protein arginine deiminase 2 (PAD2) modulates the polarization of THP-1 macrophages to the anti-inflammatory M2 phenotype

description: Additional file 3: Supplemental Table 2 A. Differentially expressed proteins in THP-1 macrophages with silenced PAD2 as compared to scrambled siRNA control group (q &lt; 0.05, n = 6). Supplemental Table 2 B. Differentially expressed proteins in THP-1 macrophages with silenced PAD2 and treated with LPS as compared to scrambled siRNA control group treated with LPS (q &lt; 0.05, n = 6).
DOI: 10.6084/m9.figshare.21602193
title: Additional file 4 of Protein arginine deiminase 2 (PAD2) modulates the polarization of THP-1 macrophages to the anti-inflammatory M2 phenotype

description: Additional file 4: Supplemental Table 3 A. All citrullinated peptides quantified in THP-1 macrophages polarized to M1 and M2 phenotype in the presence of BB-Cl-amidine. Supplemental Table 3 B. All citrullinated peptides quantified in LPS stimulated THP-1 macrophages with silenced PAD2.
DOI: 10.6084/m9.figshare.21602193.v1
title: Additional file 4 of Protein arginine deiminase 2 (PAD2) modulates the polarization of THP-1 macrophages to the anti-inflammatory M2 phenotype

description: Additional file 4: Supplemental Table 3 A. All citrullinated peptides quantified in THP-1 macrophages polarized to M1 and M2 phenotype in the presence of BB-Cl-amidine. Supplemental Table 3 B. All citrullinated peptides quantified in LPS stimulated THP-1 macrophages with silenced PAD2.
DOI: 10.6084/m9.figshare.21602232
title: Additional file 1 of The Prospective Lynch Syndrome Database: background, design, main results and complete MySQL code

description: Additional file 1.
DOI: 10.6084/m9.figshare.21602232.v1
title: Additional file 1 of The Prospective Lynch Syndrome Database: background, design, main results and complete MySQL code

description: Additional file 1.
DOI: 10.6084/m9.figshare.21602235
title: Additional file 1 of The impact of the COVID-19 pandemic on mortality in people with dementia without COVID-19: a systematic review and meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.21602235.v1
title: Additional file 1 of The impact of the COVID-19 pandemic on mortality in people with dementia without COVID-19: a systematic review and meta-analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.21602238
title: Additional file 2 of The impact of the COVID-19 pandemic on mortality in people with dementia without COVID-19: a systematic review and meta-analysis

description: Additional file 2.
DOI: 10.6084/m9.figshare.21602238.v1
title: Additional file 2 of The impact of the COVID-19 pandemic on mortality in people with dementia without COVID-19: a systematic review and meta-analysis

description: Additional file 2.
DOI: 10.5281/zenodo.6597829
title: Data associated with article "Bulk Transfer Coefficients Estimated from Eddy-Covariance Measurements Over Lakes and Reservoirs" by Guseva et al., 2022

description: The data includes <strong>(a)</strong> the general information about the lakes and reservoirs under study (e.g., lake surface area, lake mean and maximum depth); <strong>(b)</strong> the publications and data repository references for each individual lake or reservoir where we took the original datasets from (for details, see the article); <strong>(c)</strong> the number of data points (for the estimated bulk transfer coefficients) and filters applied to each dataset. ('<em>Table_Data_Bulk_Transfer_Coeff.docx</em>') In addition, we attach the derived quantities for each lake and reservoir that we analyzed in our manuscript: the neutral bulk transfer coefficients of <strong>(a)</strong> momentum (the drag coefficient); <strong>(b)</strong> heat (the Stanton number); <strong>(c)</strong> water vapor (the Dalton number). ('<em>Data_Bulk_Transfer_Coeff.xlsx</em>')
DOI: 10.5281/zenodo.7346802
title: Data associated with article "Bulk Transfer Coefficients Estimated from Eddy-Covariance Measurements Over Lakes and Reservoirs" by Guseva et al., 2022

description: The data includes <strong>(a)</strong> the general information about the lakes and reservoirs under study (e.g., lake surface area, lake mean and maximum depth); <strong>(b)</strong> the publications and data repository references for each individual lake or reservoir where we took the original datasets from (for details, see the article); <strong>(c)</strong> the number of data points (for the estimated bulk transfer coefficients) and filters applied to each dataset. ('<em>Table_Data_Bulk_Transfer_Coeff.docx</em>') In addition, we attach the derived quantities for each lake and reservoir that we analyzed in our manuscript: the neutral bulk transfer coefficients of <strong>(a)</strong> momentum (the drag coefficient); <strong>(b)</strong> heat (the Stanton number); <strong>(c)</strong> water vapor (the Dalton number). ('<em>Data_Bulk_Transfer_Coeff.xlsx</em>') <strong><em>Update 22.11.2022</em></strong>: After the first round of revisions we upload the new version of the data since we had to recalculate the transfer coefficients. <strong>(1)</strong> We added the median values of the transfer coefficients; <strong>(2)</strong> we added the transfer coefficients accounting for gustiness. ('<em>Data_Bulk_Transfer_Coeff.xlsx</em>')
DOI: 10.6084/m9.figshare.21435816
title: Output file of the pangenome analysis with Ppanggolin 1.2.74

description: This file is the output of pangenome analysis of the 2302 fully sequenced genomes of E. coli from RefSeq. The analysis was run with Ppanggolin with clustering parameters 90% identity and 90% coverage. The file can be used to retrieve the regions of genome plasticity of interest as described in https://github.com/labgem/PPanGGOLiN/wiki.
DOI: 10.5257/iea/ept/2022
title: Energy Prices and Taxes (2022 Edition)

description: Energy Prices Taxes contains a major international compilation of energy prices of OECD countries: including crude oil and oil product spot prices, import costs by crude stream, industry prices and consumer prices. The end-user prices cover the main petroleum products, gas, coal and electricity. Every issue includes full notes on sources and methods and a description of price mechanisms in each country. Time series availability varies with each data series.
DOI: 10.25430/researchdata.cab.unipd.it.00000769
title: Assessing the optimal setup for continuous water level monitoring in ephemeral streams: experimental evidence

description: Dataset about stage length and water level estimation experiments, as analyzed in the manuscript "Assessing the optimal setup for continuous water level monitoring in ephemeral streams: experimental evidence"
DOI: 10.6084/m9.figshare.21602247
title: Body weight change trajectories following the treatment of hyperthyroidism: a prospective cohort study

description: We attach tables with findings, tables and figures relating to our methods and study design, as well as figures relating to our study findings.
DOI: 10.6084/m9.figshare.21602247.v1
title: Body weight change trajectories following the treatment of hyperthyroidism: a prospective cohort study

description: We attach tables with findings, tables and figures relating to our methods and study design, as well as figures relating to our study findings.
DOI: 10.2908/sts_copi_a
title: Construction producer prices or costs, new residential buildings - annual data
title: Erzeugerpreise im Baugewerbe oder Baukosten, neue Wohngebäude - jährliche Daten
title: Prix à la production dans la construction ou coûts, nouveaux bâtiments résidentiels - données annuelles
DOI: 10.2908/sts_copi_m
title: Prix à la production dans la construction ou coûts, nouveaux bâtiments résidentiels - données mensuelles
title: Construction producer prices or costs, new residential buildings - monthly data
title: Erzeugerpreise im Baugewerbe oder Baukosten, neue Wohngebäude - monatliche Daten
DOI: 10.5281/zenodo.7346828
title: historical_spanish_PhD_computer_scientist

description: Dataset with historical data of all Spanish mathematicians whose doctoral thesis specialised in computer science. It contains data from 1981 to 11 / 2022 and has the following 10 columns: <br> - author <br> - year of publication<br> - university<br> - country<br> - title of the thesis<br> - subjet<br> - number of mentors<br> - name of mentors<br> - number of students<br> - name of students
DOI: 10.5281/zenodo.7346827
title: historical_spanish_PhD_computer_scientist

description: Dataset with historical data of all Spanish mathematicians whose doctoral thesis specialised in computer science. It contains data from 1981 to 11 / 2022 and has the following 10 columns: <br> - author <br> - year of publication<br> - university<br> - country<br> - title of the thesis<br> - subjet<br> - number of mentors<br> - name of mentors<br> - number of students<br> - name of students
DOI: 10.5517/ccdc.csd.cc29372r
title: CCDC 2118263: Experimental Crystal Structure Determination

description: Related Article: Brian Koronkiewicz, Elvira R. Sayfutyarova, Scott C. Coste, Brandon Q. Mercado, Sharon Hammes-Schiffer, James M. Mayer|2022|J.Org.Chem.|87|2997|doi:10.1021/acs.joc.1c02834
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29373s
title: CCDC 2118264: Experimental Crystal Structure Determination

description: Related Article: Brian Koronkiewicz, Elvira R. Sayfutyarova, Scott C. Coste, Brandon Q. Mercado, Sharon Hammes-Schiffer, James M. Mayer|2022|J.Org.Chem.|87|2997|doi:10.1021/acs.joc.1c02834
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6dts
title: CCDC 2151115: Experimental Crystal Structure Determination

description: Related Article: Bonwoo Koo, Dopil Kim, Da Yong Song, Woo Joo Han, Dongwook Kim, Jae Woo Park, Min Kim, Cheoljae Kim|2022|Polym.Chem.|13|6268|doi:10.1039/D2PY00684G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6dvt
title: CCDC 2151116: Experimental Crystal Structure Determination

description: Related Article: Bonwoo Koo, Dopil Kim, Da Yong Song, Woo Joo Han, Dongwook Kim, Jae Woo Park, Min Kim, Cheoljae Kim|2022|Polym.Chem.|13|6268|doi:10.1039/D2PY00684G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6dwv
title: CCDC 2151117: Experimental Crystal Structure Determination

description: Related Article: Bonwoo Koo, Dopil Kim, Da Yong Song, Woo Joo Han, Dongwook Kim, Jae Woo Park, Min Kim, Cheoljae Kim|2022|Polym.Chem.|13|6268|doi:10.1039/D2PY00684G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6dxw
title: CCDC 2151118: Experimental Crystal Structure Determination

description: Related Article: Bonwoo Koo, Dopil Kim, Da Yong Song, Woo Joo Han, Dongwook Kim, Jae Woo Park, Min Kim, Cheoljae Kim|2022|Polym.Chem.|13|6268|doi:10.1039/D2PY00684G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6dyx
title: CCDC 2151119: Experimental Crystal Structure Determination

description: Related Article: Bonwoo Koo, Dopil Kim, Da Yong Song, Woo Joo Han, Dongwook Kim, Jae Woo Park, Min Kim, Cheoljae Kim|2022|Polym.Chem.|13|6268|doi:10.1039/D2PY00684G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b6dzy
title: CCDC 2151120: Experimental Crystal Structure Determination

description: Related Article: Bonwoo Koo, Dopil Kim, Da Yong Song, Woo Joo Han, Dongwook Kim, Jae Woo Park, Min Kim, Cheoljae Kim|2022|Polym.Chem.|13|6268|doi:10.1039/D2PY00684G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7345252
title: FDTD simulation of various thickness PAAO covered with Ag NPs and DLC in different mediums (AoI 45 deg., p-polarization)

description: FDTD software: Lumerical (Ansys, version 2021 R2.3). Structure: aluminum (Palik) substrate; 230/260/290/320/350 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>AgRNP</em>) silver (Palik) nanoparticles (Ag NPs) placed directly above each pore; 60 nm thickness (<em>DLC</em>) layer with experimentally obtained optical properties of diamond-like carbon (DLC). Ag nanoparticles are encapsulated in DLC. DLC optical properties are averaged result of the matrix properties in DLC:Ag nanocomposite obtained by fitting spectroscopic ellipsometry data, which is available here: https://doi.org/10.5281/zenodo.7341684 The file used in the simulations is provided in this data set. Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1; 1.2; 1.3. Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure. Mesh override region: from 50 nm below the PAAO to 50 nm above DLC:Ag; 2 nm step size in each direction. Light source: BFAST plane wave light source; 500 nm above PAAO; 45° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; p-polarization (<em>pol</em>). Monitor (frequency domain field and power): 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. Information in the file name: <em>h</em> - thickness of PAAO; <em>AgRNP</em> - diameter of silver nanoparticles; <em>DLC</em> - thickness of DLC; <em>pol</em> - polarization; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium. Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.jpg</em>" - a schematic of modeled structure. (6) "<em>.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files. (7) "<em>DLC_SE_nk_average.txt</em>" - contains DLC optical properties (first column - wavelength in nanometers; second column - refractive index; third column - extinction coefficient).
description: The research was carried out under postdoctoral project "Patterned hybrid multilayer films for optical sensors", No. 1.1.1.2/VIAA/4/20/615.