cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/2mf-tpb-67z
title: Valerianella Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wj1-adc-byv
title: Cynosurus balansae Coss. & Durieu

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1mk-xk7-n25
title: Echinaria Desf.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/g82-n4e-14b
title: Silene L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5x5-s46-7d5
title: Avena L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/2ym-rvp-y9x
title: Centaurea L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/br0-vf5-541
title: Rumex × exspectatus Rech. fil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.nsr4k4
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gila conspersa)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 82 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062323-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/pwv-86y-2a4
title: Centranthus Neck. ex Lam. & DC.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zlp-f1p-j11
title: Veronica L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.ur3tga
title: Occurrence Download

description: A dataset containing 4666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbus aucuparia",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4666 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062325-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/an7-5cv-541
title: Veronica L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ldd-fh8-lb5
title: Rumex L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vqv-0ne-7fq
title: Plantago afra L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ev0-tn4-0km
title: Ranunculus blepharicarpos Boiss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tve-f44-z8m
title: Valantia hispida L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dbz-blv-ke8
title: Alkanna froedinii Rech. fil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jch-rpj-307
title: Rumex kerneri Borbás

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xlm-er1-kmr
title: Neslia Desv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5dy-gpf-qfh
title: Sonchus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dvf-977-4k8
title: Parapholis incurva (L.) C.E.Hubb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.cp975y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osphronemus goramy",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062327-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/38s-h3x-zjz
title: Euphorbia saratoi Ardoino

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nl6-w14-9bg
title: Mercurialis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.ntthq4
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Inga bracteifera"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062328-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/5vz-27w-ws6
title: Cerastium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8ls-e8d-31b
title: Caryophyllaceae Juss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5hz-2p7-rba
title: Ceratocephala falcata (L.) Pers.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rcl-t10-gda
title: Helianthemum salicifolium (L.) Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ab7-th0-wzr
title: Leontodon L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rxe-qxr-cjc
title: Euphorbia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7dh-am5-3mf
title: Bryonia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/spw-6va-08q
title: Vanilla phaeantha Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ymg-p0r-1ll
title: Euphorbia esula L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/bpf-54t-0a5
title: Cynosurus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/g2j-cg8-0bt
title: Dicksonia brackenridgei Mett.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/cr2-f55-957
title: Dianthus deltoides L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/7gw-15t-3f7
title: Erodium L'Hér.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pq6-t6n-3dg
title: Poterium sanguisorba subsp. polygamum (Waldst. & Kit.) Asch. & Graebn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/5qt-ba0-wn4
title: Cynosurus balansae Coss. & Durieu

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gjp-065-6p6
title: Borago officinalis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/kct-kqd-st0
title: Masdevallia arminii Linden & Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/gt4-749-mtb
title: Huperzia selago (L.) Bernh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ttv-2f3-g4b
title: Erodium cicutarium (L.) L'Hér.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/15v-ctz-594
title: Rumex maritimus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sjb-x91-nwy
title: Agrostis canina L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6tw-q8p-gjv
title: Senecio sylvaticus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t8l-awa-nf8
title: Paronychia Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tve-anh-3vp
title: Echium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x24-51m-ndy
title: Sonchus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/1nb-22x-f4w
title: Asperugo procumbens L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6na-2an-zjj
title: Erodium L'Hér.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/eah-0fx-l9z
title: Rumex elbursensis Boiss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/mja-jkq-pwp
title: Moltkiopsis ciliata (Forssk.) I. M. Johnst.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n6v-lpn-43t
title: Gagea Salisb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/z2r-tev-y1f
title: Taraxacum Weber

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/540-c1m-hv5
title: Anthemis arvensis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/877-nfe-f18
title: Masdevallia campyloglossa Rchb.f.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8e3-cqb-pdw
title: Cerastium L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qsd-zlp-y5g
title: Papaver L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9dl-dez-wek
title: Matthiola W. T. Aiton

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/12j-tnp-1e6
title: Linaria Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/qae-z96-5et
title: Cynosurus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/z68-0mq-1et
title: Callitriche L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/shk-a3q-tjj
title: Ornithogalum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6xf-xxd-af6
title: Microbryum floerkeanum (F. Weber & D. Mohr) Schimp.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/h7w-91d-3q9
title: Alopecurus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8av-bxh-jfv
title: Linaria latifolia Desf.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/khx-the-rrq
title: Salvia L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dzk-b91-ng5
title: Microbryum floerkeanum (F. Weber & D. Mohr) Schimp.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pwa-b2w-6j8
title: Iberis L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/0g0-j3a-yxp
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pcv-s7d-yv3
title: Melica L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/jam-kmm-a6h
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tn9-8d5-mg2
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/t3j-mpv-6h1
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x0w-q5r-sv0
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/xsh-a8p-kbv
title: Salix L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5281/zenodo.18543814
title: CPL-Gold-Entity-Link: annotated entity linking corpus between publications and executable code for Nextflow workflows

description: CPL-Gold-Entity-Link is an annotated entity linking corpus between publications and executable code for Nextflow workflows. These annotations are available in the YAML format.


This corpus is composed of 15 workflows extracted from CPL-Article (https://doi.org/10.5281/zenodo.18526700) and CPL-Code (https://doi.org/10.5281/zenodo.18526760). 190 potentials cross-model links are represented.

 

Repository organisation

This repository contains YAML files. For each workflow, two files are associated: one corresponding to the article and one to the code.

Each file includes a list of the bioinformatics tools mentioned, along with their potential links in the associated code and possible alternative tool formulations within the same source.


Contact






Clémence Sebe, clemence.sebe@universite-paris-saclay.fr




Funding


This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.
DOI: 10.5281/zenodo.18543813
title: CPL-Gold-Entity-Link: annotated entity linking corpus between publications and executable code for Nextflow workflows

description: CPL-Gold-Entity-Link is an annotated entity linking corpus between publications and executable code for Nextflow workflows. These annotations are available in the YAML format.


This corpus is composed of 15 workflows extracted from CPL-Article (https://doi.org/10.5281/zenodo.18526700) and CPL-Code (https://doi.org/10.5281/zenodo.18526760). 190 potentials cross-model links are represented.

 

Repository organisation

This repository contains YAML files. For each workflow, two files are associated: one corresponding to the article and one to the code.

Each file includes a list of the bioinformatics tools mentioned, along with their potential links in the associated code and possible alternative tool formulations within the same source.


Contact






Clémence Sebe, clemence.sebe@universite-paris-saclay.fr




Funding


This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.
DOI: 10.15468/dl.vhhmcr
title: Occurrence Download

description: A dataset containing 1142621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cuculus canorus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is Human Observation",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "Geometry POLYGON ((-180 -89.99893, 180 -89.99893, 180 83.59961, -180 83.59961, -180 -89.99893))"
 ]
}

 The dataset includes 1142621 records from 2014 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023808-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkn2qx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Monoplacophora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-180 -30,-150 -30,-150 0,-180 0,-180 -30))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012383-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ekj5tq
title: Occurrence Download

description: A dataset containing 1189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "TaxonKey is Aconitum carmichaelii"
 ]
}

 The dataset includes 1189 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012385-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.894e6g
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ateleia cubensis"
 ]
}

 The dataset includes 88 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012384-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.ccr6zfb
title: CSD 691902: Experimental Crystal Structure Determination

description: Related Article: Norbert Ponweiser, Piotr Warczok, Christian L. Lengauer, Klaus W. Richter|2009|Solid State Sciences|11|395|doi:10.1016/j.solidstatesciences.2008.09.001
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs8k2n
title: CCDC 723201: Experimental Crystal Structure Determination

description: Related Article: Michael Andrews, Benjamin D. Ward, Rebecca H. Laye, Benson M. Kariuki, Simon J. A. Pope|2009|Helv.Chim.Acta|92|2159|doi:10.1002/hlca.200900108
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs8k3p
title: CCDC 723202: Experimental Crystal Structure Determination

description: Related Article: Michael Andrews, Benjamin D. Ward, Rebecca H. Laye, Benson M. Kariuki, Simon J. A. Pope|2009|Helv.Chim.Acta|92|2159|doi:10.1002/hlca.200900108
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs8k5r
title: CCDC 723204: Experimental Crystal Structure Determination

description: Related Article: Michael Andrews, Benjamin D. Ward, Rebecca H. Laye, Benson M. Kariuki, Simon J. A. Pope|2009|Helv.Chim.Acta|92|2159|doi:10.1002/hlca.200900108
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccs8k4q
title: CCDC 723203: Experimental Crystal Structure Determination

description: Related Article: Michael Andrews, Benjamin D. Ward, Rebecca H. Laye, Benson M. Kariuki, Simon J. A. Pope|2009|Helv.Chim.Acta|92|2159|doi:10.1002/hlca.200900108
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccstsp1
title: CCDC 739774: Experimental Crystal Structure Determination

description: Related Article: Wendy A. Sears, Craig D. MacKinnon, Robert C. Mawhinney, Lauren C. Sinnemaki, Matthew J. Johnson, A. John Winter, Craig M. Robertson|2010|Can.J.Chem.|88|309|doi:10.1139/V09-165
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccstsn0
title: CCDC 739773: Experimental Crystal Structure Determination

description: Related Article: Wendy A. Sears, Craig D. MacKinnon, Robert C. Mawhinney, Lauren C. Sinnemaki, Matthew J. Johnson, A. John Winter, Craig M. Robertson|2010|Can.J.Chem.|88|309|doi:10.1139/V09-165
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccsxxn7
title: CCDC 742780: Experimental Crystal Structure Determination

description: Related Article: L. Bonin, D. Guillaumont, A. Jeanson, C. Den Auwer, M. Grigoriev, J.-C. Berthet, C. Hennig, A. Scheinost, Ph. Moisy|2009|Inorg.Chem.|48|3943|doi:10.1021/ic801453w
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cctbh3q
title: CCDC 754853: Experimental Crystal Structure Determination

description: Related Article: Miao-Ling Huang, Wen-Ting Weng|2015|Synth.React.Inorg.,Met.-Org.,Nano-Met.Chem.|45|678|doi:10.1080/15533174.2013.841224
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cctjy6g
title: CCDC 761056: Experimental Crystal Structure Determination

description: Related Article: Sergey I. Troyanov, Erhard Kemnitz|2012|Curr.Org.Chem.|16|1060|doi:10.2174/138527212800564367
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.