cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7053533
title: Supplementary Material for: Markers Involved in Innate Immunity and Neutrophil Activation are Elevated during Acute Human Anaphylaxis: Validation of a Microarray Study

description: <b><i>Background:</i></b> We have previously identified the upregulation of the innate immune response, neutrophil activation, and apoptosis during anaphylaxis using a microarray approach. This study aimed to validate the differential gene expression and investigate protein concentrations of “hub genes” and upstream regulators during anaphylaxis. <b><i>Methods:</i></b> Samples were collected from patients with anaphylaxis on their arrival at the emergency department, and after 1 and 3 h. mRNA levels of 11 genes (<i>interleukin-6 [IL-6], IL-10, oncostatin M [OSM], S100A8, S100A9, matrix metalloproteinase 9 [MMP9], FASL, toll-like receptor 4 [TLR4], MYD88, triggering receptor expressed on myeloid cells 1 [TREM1]</i>, and <i>cluster of differentiation 64 [CD64]</i>) were measured in peripheral blood leucocytes using qPCR. Serum protein concentrations were measured by ELISA or cytometric bead array for 6 of these candidates. <b><i>Results:</i></b> Of 69 anaphylaxis patients enrolled, 36 (52%) had severe reactions, and 38 (55%) were female. Increases in both mRNA and protein of IL-10, S100A9, MMP9, and TREM1 were observed. <i>OSM</i>, <i>S100A8</i>, <i>TLR4</i>, and <i>CD64</i> were upregulated and IL-6 protein concentrations were increased during anaphylaxis. Both <i>FASL</i> and soluble Fas ligand decreased during anaphylaxis. <b><i>Conclusion:</i></b> These results provide evidence for the involvement of innate immune pathways and myeloid cells during human anaphylaxis, validating previous microarray findings. Elevated <i>S100A8</i>, <i>S100A9</i>, <i>TLR4</i>, and <i>TREM1</i> expression, and increased S100A9 and soluble TREM1 protein concentrations strongly suggest that neutrophils are activated during acute anaphylaxis.
DOI: 10.6084/m9.figshare.7053530
title: Casa del Mobilio Carbonizzato

description: Photo(s) related to my PhD project on ancient Roman sleeping areas
DOI: 10.6084/m9.figshare.7053530.v1
title: Casa del Mobilio Carbonizzato

description: Photo(s) related to my PhD project on ancient Roman sleeping areas
DOI: 10.6084/m9.figshare.7053506
title: Supplementary Material for: Onset to Reperfusion Time Was Not Important in Mechanical Thrombectomy for Elderly Patients: A Retrospective Multicenter Study in Tama Area, Tokyo

description: <b><i>Background:</i></b> Mechanical thrombectomy (MT) has become the standard of care for acute ischemic stroke with large vessel occlusion; however, evidence remains insufficient for MT for elderly patients, especially with respect to factors affecting their outcomes. <b><i>Methods:</i></b> This study was a retrospective analysis of a multicenter registry of MT, called Tama Registry of Acute Endovascular Thrombectomy. Patients were divided by their age into 2 groups: Nonelderly (NE; &lt; 80) and elderly (E; ≥80). Factors related to a good outcome (modified Rankin scale score ≤2) were examined in each group. Onset to reperfusion time (OTR) was stratified into 4 categories: category 1, 0 – ≤180 min; category 2, &gt; 180 – ≤360 min; category 3, &gt; 360 min or onset time not identified; and category 4, effective recanalization not achievable. <b><i>Results:</i></b> 143 NE patients and 78 E patients were included in this study. The E group had less chance of achieving a good outcome (NE group 51%, E group 35%; <i>p</i> = 0.024). In the NE group, lower OTR category was an independent prognostic factor for good outcome (<i>p</i> = 0.037, OR = 1.09). However, in the E group, OTR category was not a significant predictor on multivariate analysis. Instead, effective recanalization (<i>p</i> = 0.0081, OR 1.40) and lower National Institute of Health Stroke Scale score at presentation (<i>p</i> = 0.0032, OR 1.02) were the independent predictors. <b><i>Conclusions:</i></b> In MT for elderly patients, effective recanalization improved the patients’ outcome but OTR affected less. Further studies are warranted to establish the appropriate patient selection and treatment strategies.
DOI: 10.6084/m9.figshare.7053458
title: 16S rRNA sequences with annotated taxonomy and sample site

description: 16S rRNA amplicons were sequenced by GATC-Biotech (Eurofins Genomics), Sanger sequencing (ABI 3730xl DNA analysis systems). Excel file supplement sequences with their taxonomy and respective sample site (water treatment plant).
DOI: 10.6084/m9.figshare.7053458.v1
title: 16S rRNA sequences with annotated taxonomy and sample site

description: 16S rRNA amplicons were sequenced by GATC-Biotech (Eurofins Genomics), Sanger sequencing (ABI 3730xl DNA analysis systems). Excel file supplement sequences with their taxonomy and respective sample site (water treatment plant).
DOI: 10.6084/m9.figshare.7053413
title: BarkBeetleCommunityDataFromKauai_BernardEtAl.xlsx

description: Here we present raw data collected from surveying two coffee estates on the Hawaiian island of Kauai, one in a tropical wet climate (for 1 growing season) and the other in a tropical dry savanna (for 2 growing seasons). We identified 20 species of bark beetles (Scolytinae), which yielded a species richness of 17 at each site.<br>
DOI: 10.6084/m9.figshare.7053413.v1
title: BarkBeetleCommunityDataFromKauai_BernardEtAl.xlsx

description: Here we present raw data collected from surveying two coffee estates on the Hawaiian island of Kauai, one in a tropical wet climate (for 1 growing season) and the other in a tropical dry savanna (for 2 growing seasons). We identified 20 species of bark beetles (Scolytinae), which yielded a species richness of 17 at each site.<br>
DOI: 10.6084/m9.figshare.7053416
title: Assessment of 22 inorganic elements in human amniotic fluid: a cross-sectional study conducted in Canary Islands (Spain)

description: We conducted a cross-sectional study in the Hospital Universitario de Canarias (Tenerife, Canary Islands, Spain) measuring 22 inorganic elements in amniotic fluid (AF) samples obtained from 65 pregnant women. ICP-MS was used for quantification of inorganic elements. Newborn parameters at delivery were all within the normal range. Concentrations of all elements were detected in measurable amounts in AF. The concentration of elements was similar to those reported in the literature. The concentrations of the most dangerous heavy metals – Cd, Cr, Ni, Hg and Pb – were lower than those reported by other authors. This study demonstrates that toxic inorganic elements pass into and accumulate in AF. The presence of such pollutants in contact with developing embryos from the intrauterine period could exert adverse health effects that deserve future investigations.
DOI: 10.6084/m9.figshare.7053392
title: Iris Webpage

description: A simple web page containing Fisher's Iris Dataset.
DOI: 10.6084/m9.figshare.7053392.v1
title: Iris Webpage

description: A simple web page containing Fisher's Iris Dataset.
DOI: 10.6084/m9.figshare.7053392.v2
title: Iris Webpage

description: A simple web page containing Fisher's Iris Dataset.
DOI: 10.26180/5b9614c84773f
title: molecular Operational Taxonomic Units (mOTUs)

description: mOTU library for "Molecular analysis of predator scats reveals role of salps in temperate inshore foodwebs" under review in Frontiers in Marine Science (Manuscript ID: 407577). Full methods will be in the published manuscript.<br>Ethics approval statement: This research was conducted under an ethics permit No. 2.2014 approved by Phillip Island Nature Parks Animal Ethics Committee number and Research Permit No. 10006148 from the Department of Environment, Land, Water and Planning.<br>
DOI: 10.6084/m9.figshare.7053392.v3
title: Iris Webpage

description: A simple web page containing Fisher's Iris Dataset.
DOI: 10.26180/5b96151bc3f3a
title: Frequency of occurrence used in analyses

description: Frequency of occurrence data for "Molecular analysis of predator scats reveals role of salps in temperate inshore foodwebs" under review in Frontiers in Marine Science (Manuscript ID: 407577). Full methods will be in the published manuscript.<br>The frequency of occurrence data used to analyse the differences in the presence of prey taxa in faecal DNA from little penguin scats over months and breeding stages. These samples were collected from Phillip Island in southeastern Australia under ethics permit No. 2.2014 approved by Phillip Island Nature Parks Animal Ethics Committee number and Research Permit No. 10006148 from the Department of Environment, Land, Water and Planning.
DOI: 10.26180/5b961569647e1
title: Relative Read Abundance used in analyses

description: Relative read abundance data for "Molecular analysis of predator scats reveals role of salps in temperate inshore foodwebs" under review in Frontiers in Marine Science (Manuscript ID: 407577). Full methods will be in the published manuscript.<br>This is the dataset used directly by our R code to analyse the differences in the relative read abundance (a proxy for relative abundance) of different prey taxa in DNA taken from little penguin DNA. This DNA was collected at Phillip Island in southe-eastern Australia under ethics permit No. 2.2014 approved by Phillip Island Nature Parks Animal Ethics Committee number and Research Permit No. 10006148 from the Department of Environment, Land, Water and Planning.
DOI: 10.6084/m9.figshare.7053284
title: PNTD-D-18-00902_Carrasco-Escobar2018_training_test_sets

description: Training and test sets for GEE random forest classification.
DOI: 10.6084/m9.figshare.7053284.v1
title: PNTD-D-18-00902_Carrasco-Escobar2018_training_test_sets

description: Training and test sets for GEE random forest classification.
DOI: 10.6084/m9.figshare.7052807
title: Additional file 2: of Serum progesterone distribution in normal pregnancies compared to pregnancies complicated by threatened miscarriage from 5 to 13 weeks gestation: a prospective cohort study

description: Figure S1A. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women with low risk pregnancy [NP]. Figure S1B. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women with threatened miscarriage [TM]. Figure S1C. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women who presented with threatened miscarriage and had ongoing pregnancy at 16 weeks [TMO]. Figure S1D. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women who presented with threatened miscarriage and had a spontaneous miscarriage at or before 16 weeks [TMM]. (ZIP 141 kb)
DOI: 10.6084/m9.figshare.7052807.v1
title: Additional file 2: of Serum progesterone distribution in normal pregnancies compared to pregnancies complicated by threatened miscarriage from 5 to 13 weeks gestation: a prospective cohort study

description: Figure S1A. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women with low risk pregnancy [NP]. Figure S1B. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women with threatened miscarriage [TM]. Figure S1C. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women who presented with threatened miscarriage and had ongoing pregnancy at 16 weeks [TMO]. Figure S1D. Distribution of serum progesterone across gestation weeks 5 – 13 amongst women who presented with threatened miscarriage and had a spontaneous miscarriage at or before 16 weeks [TMM]. (ZIP 141 kb)
DOI: 10.6084/m9.figshare.7052768
title: Additional file 1: of Renal cancer: new models and approach for personalizing therapy

description: Table S1. (A) Clinical features of 57 collected ccRCCs patients including: 3 G1; 15 G2; 27 G3 and 12 G4. B. Clinical features of 10 collected ccRCCs patients used for sorting experiments. (ZIP 880 kb)
DOI: 10.6084/m9.figshare.7052765
title: Additional file 9: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S9. The RNA-Seq analysis of DEGs associated with the functional category â DNA replicationâ . (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.7052765.v1
title: Additional file 9: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S9. The RNA-Seq analysis of DEGs associated with the functional category â DNA replicationâ . (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.7052768.v1
title: Additional file 1: of Renal cancer: new models and approach for personalizing therapy

description: Table S1. (A) Clinical features of 57 collected ccRCCs patients including: 3 G1; 15 G2; 27 G3 and 12 G4. B. Clinical features of 10 collected ccRCCs patients used for sorting experiments. (ZIP 880 kb)
DOI: 10.6084/m9.figshare.7052762
title: Additional file 8: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S8. The RNA-Seq analysis of DEGs associated with the functional category â Differentiationâ . (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.7052762.v1
title: Additional file 8: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S8. The RNA-Seq analysis of DEGs associated with the functional category â Differentiationâ . (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.7052756
title: Additional file 7: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S7. The RNA-Seq analysis of DEGs associated with the functional category â Cell adhesionâ . (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.7052756.v1
title: Additional file 7: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S7. The RNA-Seq analysis of DEGs associated with the functional category â Cell adhesionâ . (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.7052747
title: Additional file 6: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S6. The RNA-Seq analysis of DEGs associated with the functional category â Apoptosisâ . (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.7052747.v1
title: Additional file 6: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S6. The RNA-Seq analysis of DEGs associated with the functional category â Apoptosisâ . (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.7052738
title: Additional file 5: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S5. The RNA-Seq analysis of DEGs associated with the functional category â Adaptive immunityâ . (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.7052738.v1
title: Additional file 5: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S5. The RNA-Seq analysis of DEGs associated with the functional category â Adaptive immunityâ . (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.7052729
title: Additional file 4: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S4. Analysis of the functional categories of the proteins encoded by DEGs. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.7052729.v1
title: Additional file 4: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S4. Analysis of the functional categories of the proteins encoded by DEGs. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.7052708
title: Additional file 2: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S2. DEGs that exhibited a reversed direction of expression in IR4.5 vs. SH4.5 and IR24 vs. SH24. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.7052702
title: Additional file 21: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S21. The characterization of the primers for real-time RT-PCR. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7052708.v1
title: Additional file 2: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S2. DEGs that exhibited a reversed direction of expression in IR4.5 vs. SH4.5 and IR24 vs. SH24. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.7052702.v1
title: Additional file 21: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S21. The characterization of the primers for real-time RT-PCR. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7052681
title: Additional file 20: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S20. Analysis of the signaling pathways associated with DEGs in the condition of the tMCAO model. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.7052681.v1
title: Additional file 20: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S20. Analysis of the signaling pathways associated with DEGs in the condition of the tMCAO model. (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.7052678
title: Additional file 1: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S1. Characterization of ischemia at 4.5 after tMCAO using DWI mode of MRI. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.7052678.v1
title: Additional file 1: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S1. Characterization of ischemia at 4.5 after tMCAO using DWI mode of MRI. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.7052669
title: Additional file 2: of The genome of Naegleria lovaniensis, the basis for a comparative approach to unravel pathogenicity factors of the human pathogenic amoeba N. fowleri

description: Genome Similarity Network: Number of shared gene families between unicellular eukaryotic species within the Genome Similarity Network. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7052669.v1
title: Additional file 2: of The genome of Naegleria lovaniensis, the basis for a comparative approach to unravel pathogenicity factors of the human pathogenic amoeba N. fowleri

description: Genome Similarity Network: Number of shared gene families between unicellular eukaryotic species within the Genome Similarity Network. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7052663
title: Additional file 19: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S19. The RNA-Seq analysis of DEGs associated with the functional category â Translation regulationâ . (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7052663.v1
title: Additional file 19: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S19. The RNA-Seq analysis of DEGs associated with the functional category â Translation regulationâ . (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.7052660
title: Additional file 1: of The genome of Naegleria lovaniensis, the basis for a comparative approach to unravel pathogenicity factors of the human pathogenic amoeba N. fowleri

description: N. fowleri specific Proteins associated with the GO Term “Membrane”. Results of PFAM domain analysis and BLAST search against SwissProt of N. fowleri specific proteins associated with the GO Term “Membrane”. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7052660.v1
title: Additional file 1: of The genome of Naegleria lovaniensis, the basis for a comparative approach to unravel pathogenicity factors of the human pathogenic amoeba N. fowleri

description: N. fowleri specific Proteins associated with the GO Term “Membrane”. Results of PFAM domain analysis and BLAST search against SwissProt of N. fowleri specific proteins associated with the GO Term “Membrane”. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7052654
title: Additional file 7: of Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

description: Mann-Kendall Test to detect trend in alpha diversity. (HTML 785 kb)
DOI: 10.6084/m9.figshare.7052648
title: Additional file 18: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S18. The RNA-Seq analysis of DEGs associated with the functional category â Transcription regulationâ . (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.7052654.v1
title: Additional file 7: of Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

description: Mann-Kendall Test to detect trend in alpha diversity. (HTML 785 kb)
DOI: 10.6084/m9.figshare.7052642
title: Additional file 6: of Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

description: OTU table summarized to species level used for correlation analysis. (CSV 295 kb)
DOI: 10.6084/m9.figshare.7052648.v1
title: Additional file 18: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S18. The RNA-Seq analysis of DEGs associated with the functional category â Transcription regulationâ . (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.7052642.v1
title: Additional file 6: of Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

description: OTU table summarized to species level used for correlation analysis. (CSV 295 kb)
DOI: 10.6084/m9.figshare.7052633
title: Additional file 17: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S17. The RNA-Seq analysis of DEGs associated with the functional category â Synapseâ . (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.7052633.v1
title: Additional file 17: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S17. The RNA-Seq analysis of DEGs associated with the functional category â Synapseâ . (XLSX 29Â kb)
DOI: 10.6084/m9.figshare.7052621
title: Additional file 5: of Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

description: OTU table summarized to genus level used for correlation analysis. (CSV 1031 kb)
DOI: 10.6084/m9.figshare.7052621.v1
title: Additional file 5: of Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization

description: OTU table summarized to genus level used for correlation analysis. (CSV 1031 kb)
DOI: 10.6084/m9.figshare.7052615
title: Additional file 16: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S16. The RNA-Seq analysis of DEGs associated with the functional category â Stress responseâ . (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.7052615.v1
title: Additional file 16: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

description: Table S16. The RNA-Seq analysis of DEGs associated with the functional category â Stress responseâ . (XLSX 17Â kb)