cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v06gr3k
title: Data from: Geographic clines in wing morphology relate to colonization history in New World but not Old World populations of yellow dung flies

description: Geographic clines offer insights about putative targets and agents of
 natural selection as well as tempo and mode of adaptation. However,
 demographic processes can lead to clines that are indistinguishable from
 adaptive divergence. Using the widespread yellow dung fly Scathophaga
 stercoraria (Diptera: Scathophagidae), we examine quantitative genetic
 differentiation (QST) of wing shape across North America, Europe and
 Japan, and compare this differentiation with that of ten microsatellites
 (FST). Morphometric analyses of 28 populations reared at three
 temperatures revealed significant thermal plasticity, sexual dimorphism
 and geographic differentiation in wing shape. In North America
 morphological differentiation followed the decline in microsatellite
 variability along the presumed route of recent colonization from the
 southeast to the northwest. Across Europe, where S. stercoraria presumably
 existed for much longer time and where no molecular pattern of isolation
 by distance was evident, clinal variation was less pronounced despite
 significant morphological differentiation (QST&gt;FST). Shape vector
 comparisons further indicate that thermal plasticity (hot-to-cold) does
 not mirror patterns of latitudinal divergence (south-to-north), as might
 have been expected under a scenario with temperature as the major agent of
 selection. Our findings illustrate the importance of detailed
 phylogeographic information when interpreting geographic clines of
 dispersal traits in an adaptive evolutionary framework.
description: Scathophaga_wings_microsatelitesThe data file contains information on wing shape and size of 28 Scathophaga stercoraria populations from North America, Europe, and Japan, reared at three developmental temperatures (12°C, 18°C and 24°C). Landmark data of 12 x-y coordinates of individual flies are Procrustes transformed and raw centroid sizes are scaled in millimeter. Allelic information on 10 polymorphic microsatellites of 33 populations is provided in an extra sheet.
DOI: 10.5061/dryad.3vb89dj
title: Data from: An inversion supergene in Drosophila underpins latitudinal clines in survival traits

description: Chromosomal inversions often contribute to local adaptation across
 latitudinal clines, but the underlying selective mechanisms remain poorly
 understood. We and others have previously shown that a clinal inversion
 polymorphism in Drosophila melanogaster, In(3R)Payne, underpins body size
 clines along the North American and Australian east coasts. Here we ask
 whether this polymorphism also contributes to clinal variation in other
 fitness-related traits, namely survival traits (lifespan, survival upon
 starvation, and survival upon cold shock). We generated homokaryon lines,
 either carrying the inverted or standard chromosomal arrangement, isolated
 from populations approximating the endpoints of the North American cline
 (Florida, Maine), and phenotyped the flies at two growth temperatures
 (18°C, 25°C). Across both temperatures, high-latitude flies from Maine
 lived longer and were more stress resistant than low-latitude flies from
 Florida, as previously observed. Interestingly, we find that this
 latitudinal pattern is partly explained by the clinal distribution of the
 In(3R)P polymorphism, which is at ~50% frequency in Florida but absent in
 Maine: inverted karyotypes tended to be shorter-lived and less stress
 resistant than uninverted karyotypes. We also detected an interaction
 between karyotype and temperature on survival traits. Since In(3R)P
 influences body size and multiple survival traits, it can be viewed as a
 'supergene', a cluster of tightly linked loci affecting multiple
 complex phenotypes. We conjecture that the inversion cline is maintained
 by fitness trade-offs and balancing selection across geography;
 elucidating the mechanisms whereby this inversion affects alternative,
 locally adapted phenotypes across the cline is an important task for
 future work.
description: Phenotypic raw data for
 In(3R)Payne InversionOur main goal was to
 examine whether the clinally varying In(3R)Payne inversion polymorphism
 affects three major survival traits in North American populations of D.
 melanogaster. We measured adult lifespan (in days), survival upon
 starvation (in hours), and survival upon cold shock (as the proportion
 survival ) for isochromosomal lines of D. melanogaster from Florida and
 Maine, which were either homokaryotypic for the In(3R)Payne inversion or
 for the uninverted (standard) chromosomal arrangement, at growth
 temperatures (18°C and 25°C). We also measured wing area (in mm2). For
 more details see our paper Durmaz et al. 2018, entitled "An inversion
 supergene in Drosophila underpins latitudinal clines in survival
 traits", published in Journal of Evolutionary Biology. For additional
 details please contact the first author, Esra Durmaz
 (esra.durmaz@unifr.ch), or the corresponding author, Thomas Flatt
 (thomas.flatt@unifr.ch).Raw
 data_Durmaz_JEB2018.xls
DOI: 10.5061/dryad.5m1m755
title: Data from: Effect of sensor location on continuous intraperitoneal glucose sensing in an animal model

description: In diabetes research, the development of the artificial pancreas has been
 a major topic since continuous glucose monitoring became available in the
 early 2000's. A prerequisite for an artificial pancreas is fast and
 reliable glucose sensing. However, subcutaneous continuous glucose
 monitoring carries the disadvantage of slow dynamics. As an alternative,
 we explored continuous glucose sensing in the peritoneal space, and
 investigated potential spatial differences in glucose dynamics within the
 peritoneal cavity. As a secondary outcome, we compared the glucose
 dynamics in the peritoneal space to the subcutaneous tissue. Eight-hour
 experiments were conducted on 12 anesthetised non-diabetic pigs. Four
 commercially available amperometric glucose sensors (FreeStyle Libre,
 Abbott Diabetes Care Ltd., Witney, UK) were inserted in four different
 locations of the peritoneal cavity and two sensors were inserted in the
 subcutaneous tissue. Meals were simulated by intravenous infusions of
 glucose, and frequent arterial blood and intraperitoneal fluid samples
 were collected for glucose reference. No significant differences were
 discovered in glucose dynamics between the four quadrants of the
 peritoneal cavity. The intraperitoneal sensors responded faster to the
 glucose excursions than the subcutaneous sensors, and the time delay was
 significantly smaller for the intraperitoneal sensors, but we did not find
 significant results when comparing the other dynamic parameters.
description: Data from
 intraperitoneal glucose sensing in pigsData_Dryad.xlsraw_data
DOI: 10.5061/dryad.44v9r82
title: Data from: State-space modelling of the flight behaviour of a soaring bird provides new insights to migratory strategies

description: 1. Characterizing the spatiotemporal variation of animal behaviour can
 elucidate the way individuals interact with their environment and allocate
 energy. Increasing sophistication of tracking technologies paired with
 novel analytical approaches allows the characterisation of movement
 dynamics even when an individual is not directly observable. 2. In this
 study, high-resolution movement data collected via global positioning
 system (GPS) tracking in three dimensions were paired with topographical
 information and used in a Bayesian state-space model to describe the
 flight modes of migrating golden eagles (Aquila chrysaetos) in eastern
 North America. 3. Our model identified five functional behavioural states,
 two of which were previously undescribed variations on thermal soaring.
 The other states comprised gliding, perching and orographic soaring.
 States were discriminated by movement features in the horizontal (step
 length and turning angle) and vertical (change in altitude) planes, and by
 the association with ridgelines promoting wind deflection. Tracked eagles
 spent 2%, 31%, 38%, 9% and 20% of their day time in directed thermal
 soaring, gliding, convoluted thermal soaring, perching and orographic
 soaring, respectively. The analysis of the relative occurrence of these
 flight modes highlighted yearly, seasonal, age, individual and sex
 differences in flight strategy and performance. Particularly, less
 energy-efficient orographic soaring was more frequent in autumn, when
 thermals were less available. Adult birds were also better at optimising
 energy efficiency than sub-adults. 4. Our approach represents the first
 example of a state-space model for bird flight mode using altitude data in
 conjunction with horizontal locations, and is applicable to other flying
 organisms where similar data are available. The ability to describe animal
 movements in a three-dimensional habitat is critical to advance our
 understanding of the functional processes driving animals’ decisions.
description: Golden eagle movement
 dataThe file includes the
 time series of the four variables required to fit the state-space model
 for the classification of eagle behaviour. Altitude (in meters), step
 length (in meters) and turning angle (in radians) were derived from GPS
 data, while hierarchical slope position was computed using package
 spatialEco in R and based on ground elevation data obtained from the
 Global Multi-resolution Terrain Elevation Data 2010 at 30-arc-second
 spatial resolution (data available from the U.S. Geological Survey:
 https://earthexplorer.usgs.gov/). Measurements are reported for each
 minute, together with the ID of the corresponding track
 segment.GoldenEagle_FinalData_Dryad_FE.csv
DOI: 10.5061/dryad.g183842
title: Data from: Changes in Eocene plant diversity and composition of the vegetation: the lacustrine archive of Messel (Germany)

description: Based on high resolution palynological analysis of 680 samples from a
 core, short-term changes in plant diversity and floristic composition
 within the Paleogene greenhouse have been detected in the lacustrine
 succession of a Lower to Middle Eocene maar lake at Messel (Federal State
 of Hesse, Germany). The microfloristic data show that taxonomic diversity
 increased rapidly within some decades during recolonization of a
 volcanically devastated area around the lake. With the establishment of a
 climax vegetation at the end of recolonization the maximum in
 palynological diversity was reached in the crater area. During the
 following 640 Kyr the composition of the palynospectrum changed only
 gradually. However, different richness and evenness estimations show that
 alpha and gamma diversity decreased up to 35% which can be related to the
 establishment of an equilibrium stage within the climax vegetation that
 led to the dominance of an assemblage of self-replacing species.
 Nevertheless, time series analysis of alpha diversity changes within the
 climax vegetation reveals that orbitally controlled climate change of
 Milankovitch and Sub-Milanovitch order influenced the diversity of the
 vegetation resulting in a rise of beta diversity. Based on the composition
 of the vegetation and comparison to modern analogues our analysis now
 proves that Eocene paratropical plant diversity increased during periods
 of slightly higher temperature and precipitation. Therefore, both
 composition and diversity of the vegetation was highly susceptible to
 minor-scale short-term changes in climate even during equable greenhouse
 conditions.
description: Raw
 dataRaw data table with
 palynological countings of 715 samples from the maar lake of Messel,
 Germany (core Messel2001).Supplementary
 MaterialIncludes Supplementary
 Table 1: Complete list of palynomorphs from the maar lake of Messel
 including their systematic affinities; description for calculation of
 phase shifts and phase wheels; Supplementary Table 2: List of five
 clusters taken from Lenz et al. (2011, 2015) and their palynomorph
 content; Supplementary Figures 1 and 2: Alpha diversity eccentricity and
 precession modulations; Supplementary Tables 3 - 6: Phase shift
 calculations between the amplitude modulations of alpha diversity and
 palynomorph clusters for short eccentricity and
 precession.
DOI: 10.60893/figshare.pof.30969766
title: Supplementary Information

description: The document provides additional material that supports the systematic review. Specifically, it contains detailed information extracted from the selected articles according section 2.3.
DOI: 10.60893/figshare.pof.30969766.v1
title: Supplementary Information

description: The document provides additional material that supports the systematic review. Specifically, it contains detailed information extracted from the selected articles according section 2.3.
DOI: 10.5061/dryad.cq2862k
title: Data from: Recalibrating timing behavior via expected covariance between temporal cues

description: Individuals must predict future events to proactively guide their
 behavior. Predicting when events will occur is a critical component of
 these expectations. Temporal expectations are often generated based on
 individual cue-duration relationships. However, the durations associated
 with different environmental cues will often co-vary due to a common
 cause. We show that timing behavior may be calibrated based on this
 expected covariance, which we refer to as the 'common cause
 hypothesis'. In five experiments using rats, we found that when the
 duration associated with one temporal cue changes, timed-responding to
 other cues shift in the same direction. Furthermore, training subjects
 that expecting covariance is not appropriate in a given situation blocks
 this effect. Finally, we confirmed that this transfer is
 context-dependent. These results reveal a novel principle that modulates
 timing behavior, which we predict will apply across a variety of
 magnitude-expectations.
description: data
 zipContains all data
 (pre-processed and in raw format) as well as scripts (matlab) used to
 analyze the data. A main readme file is contained in the main folder and
 individualized readme files are provided in each sub-folder for different
 experiments/codes.
DOI: 10.5061/dryad.sv43650
title: Data from: Early arrival and climatically-linked geographic expansion of New World monkeys from tiny African ancestors

description: New World monkeys (platyrrhines) are one of the most diverse groups of
 primates, occupying today a wide range of ecosystems in the American
 tropics and exhibiting large variations in ecology, morphology, and
 behavior. Although the relationships among the almost 200 living species
 are relatively well understood, we lack robust estimates of the timing of
 origin, ancestral morphology, and geographic range evolution of the clade.
 Here we integrate paleontological and molecular evidence to assess the
 evolutionary dynamics of extinct and extant platyrrhines. We develop novel
 analytical frameworks to infer the evolution of body mass, changes in
 latitudinal ranges through time, and species diversification rates using a
 phylogenetic tree of living and fossil taxa. Our results show that
 platyrrhines originated 5–10 million years earlier than previously
 assumed, dating back to the Middle Eocene. The estimated ancestral
 platyrrhine was small – weighing 0.4 kg – and matched the size of their
 presumed African ancestors. As the three platyrrhine families diverged, we
 recover a rapid change in body mass range. During the Miocene Climatic
 Optimum, fossil diversity peaked and platyrrhines reached their widest
 latitudinal range, expanding as far South as Patagonia, favored by warm
 and humid climate and the lower elevation of the Andes. Finally, global
 cooling and aridification after the middle Miocene triggered a geographic
 contraction of New World monkeys and increased their extinction rates.
 These results unveil the full evolutionary trajectory of an iconic and
 ecologically important radiation of monkeys and showcase the necessity of
 integrating fossil and molecular data for reliably estimating evolutionary
 rates and trends.
description: Silvestro_et_al_FBMSupplementary informationSilvestro_Tejedor_et_al_SI.pdf
DOI: 10.15468/dl.847scr
title: Occurrence Download

description: A dataset containing 38351848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anas platyrhynchos domesticus, Anas poecilorhyncha, Anas superciliosa, Anas undulata, Anser anser, Anser anser domesticus, Anser brachyrhynchus, Anser caerulescens, Anser caerulescens caerulescens, Anser canagicus, Anser cygnoides, Anser cygnoides domesticus, Anser fabalis, Anser indicus, Anser rossii, Anseranas semipalmata, Aythya baeri, Aythya collaris, Aythya nyroca, Aythya valisineria, Branta bernicla, Branta canadensis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38351848 records from 2606 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001487-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxjeu9
title: Occurrence Download

description: A dataset containing 128716 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acer rubrum L."
 ]
}

 The dataset includes 128716 records from 432 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009891-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg3776
title: Occurrence Download

description: A dataset containing 15471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Footprint WKT mismatch, Country derived from coordinates, Continent derived from coordinates, Recorded date invalid, Recorded date mismatch, The taxon ID was not found in the checklist, The taxon concept ID was not found in the checklist, Identified date invalid, Modified date invalid, References URI invalid, Occurrence status unparsable, Occurrence status inferred from individual count)",
 "OccurrenceStatus is Present",
 "TaxonKey is Artemisia annua",
 "Year 1950-2025"
 ]
}

 The dataset includes 15471 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005176-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usbqjg
title: Occurrence Download

description: A dataset containing 1617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bidens pilosa"
 ]
}

 The dataset includes 1617 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005177-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.31494
title: Heterologous expression and metabolite analysis of three biosynthetic genes in Arthrobotrys oligospora
title: 少孢节丛孢中三个生物合成基因的异源表达及代谢产物分析

description: Figure S1 Secondary Mass Spectrometry of Compounds Predicted by UHPLC-MS in [M-H] - Mode of Fermentation Liquid of Heterologous Expression Strain of Aspergillus oryzae Figure S2 UV absorption of differential peaks in PDA pattern of Asor-276-277-278 heterologous expression strain Figure S3: First order mass spectrum of differential peaks under the [M+H]+pattern of Asor-276-277-278 heterologous expression strain Figure S4: First order mass spectrum of differential peaks under the [M-H] - mode diagram of the heterologous expression strain Asor-276-277-278 Figure S5 Heterologous expression plasmid vector image Table S1 UV absorption of differential peaks of Asor-276-277-278 expression strains 
description: Figure S1 Secondary Mass Spectrometry of Compounds Predicted by UHPLC-MS in [M-H] - Mode of Fermentation Liquid of Heterologous Expression Strain of Aspergillus oryzae Figure S2 UV absorption of differential peaks in PDA pattern of Asor-276-277-278 heterologous expression strain Figure S3: First order mass spectrum of differential peaks under the [M+H]+pattern of Asor-276-277-278 heterologous expression strain Figure S4: First order mass spectrum of differential peaks under the [M-H] - mode diagram of the heterologous expression strain Asor-276-277-278 Figure S5 Heterologous expression plasmid vector image Table S1 UV absorption of differential peaks of Asor-276-277-278 expression strains
DOI: 10.5281/zenodo.17696528
title: A sympathetic-eosinophil axis orchestrates psychological stress to exacerbate skin inflammation
DOI: 10.5281/zenodo.17696527
title: A sympathetic-eosinophil axis orchestrates psychological stress to exacerbate skin inflammation
DOI: 10.57760/sciencedb.30830
title: Whole genome INDEL mutation rate maps for multiple species
title: Whole genome INDEL mutation rate maps for multiple species

description: We developed a deep learning framework 'MuRaL-INDEL' to estimate insertion and deletion (INDEL) mutation rates using genomic sequnence as input. This Dataset provides the whole genome mutation rate maps for multiple species described in the paper.
description: We developed a deep learning framework 'MuRaL-INDEL' to estimate insertion and deletion (INDEL) mutation rates using genomic sequnence as input. This Dataset provides the whole genome mutation rate maps for multiple species described in the paper.
DOI: 10.57760/sciencedb.31520
title: Sea surface temperature data from 15 CMIP6 climate models
title: Sea surface temperature data from 15 CMIP6 climate models

description: This dataset includes Sea surface temperature data from 15 CMIP6 climate models. To maintain consistency between the observational data and the historical results of CMIP6, the study period is selected from 1982 to 2014, and time resolution is daily. The spatial selection covers the Bay of Bengal region (5°S to 35°N, 70°E to 110°E). Due to the varying horizontal resolutions across models, all model outputs are uniformly interpolated onto 0.25°×0.25° grid using nearest-neighbor interpolation.
description: This dataset includes Sea surface temperature data from 15 CMIP6 climate models. To maintain consistency between the observational data and the historical results of CMIP6, the study period is selected from 1982 to 2014, and time resolution is daily. The spatial selection covers the Bay of Bengal region (5°S to 35°N, 70°E to 110°E). Due to the varying horizontal resolutions across models, all model outputs are uniformly interpolated onto 0.25°×0.25° grid using nearest-neighbor interpolation.
DOI: 10.15468/dl.tjh6ks
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-78.43865 -7.25081,-77.83904 -7.25081,-77.83904 -6.51528,-78.43865 -6.51528,-78.43865 -7.25081))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Turdus chiguanco",
 "Year 2022-2025"
 ]
}

 The dataset includes 552 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005178-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.31385
title: Financial Phrase Bank for financial sentiment analysis
title: Financial Phrase Bank for financial sentiment analysis

description: It is a human-annotated phrase bank for financial and economic texts, labels as “positive”, “neutral”, and “negative”. 
description: It is a human-annotated phrase bank for financial and economic texts, labels as “positive”, “neutral”, and “negative”.