cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14504009
title: Dataset - Automated Design Space Exploration of Approximation-Enabled Accelerators: A Systematic Literature Mapping

description: Data collected for systematic literature mapping on design space exploration strategies for approximate computing accelerators.

Abstract— This paper provides a systematic mapping ofthe literature regarding automated Design Space Exploration(DSE) for error-tolerant systems, where Approximate Com-puting (AxC) is employed to provide gains in energy efficiencyor performance. Starting from the Scopus aggregator andIEEE Xplore library, 1302 texts were analyzed, from which 43peer-reviewed research works were selected to map the state-of-the-art in DSE techniques for designing approximate hard-ware accelerators. The selected papers were used to catalogthe most commonly used search strategies, the methods for in-tegrating approximate units and techniques in the design spaceof a given system, and challenges and opportunities for the us-age of automated DSE in AxC-enabled workflows. The resultshighlight the usage of genetic and evolutionary algorithms, andidentify a trend for tree search-based exploration, with a focuson selection of arithmetic units and functional approximation.This study also shows the challenge of integrating a DSE stagein existing workflows, particularly due to the difficulty of an-alyzing error and electrical characteristics with feasible run-times.
DOI: 10.5281/zenodo.14504010
title: Dataset - Automated Design Space Exploration of Approximation-Enabled Accelerators: A Systematic Literature Mapping

description: Data collected for systematic literature mapping on design space exploration strategies for approximate computing accelerators.

Abstract— This paper provides a systematic mapping ofthe literature regarding automated Design Space Exploration(DSE) for error-tolerant systems, where Approximate Com-puting (AxC) is employed to provide gains in energy efficiencyor performance. Starting from the Scopus aggregator andIEEE Xplore library, 1302 texts were analyzed, from which 43peer-reviewed research works were selected to map the state-of-the-art in DSE techniques for designing approximate hard-ware accelerators. The selected papers were used to catalogthe most commonly used search strategies, the methods for in-tegrating approximate units and techniques in the design spaceof a given system, and challenges and opportunities for the us-age of automated DSE in AxC-enabled workflows. The resultshighlight the usage of genetic and evolutionary algorithms, andidentify a trend for tree search-based exploration, with a focuson selection of arithmetic units and functional approximation.This study also shows the challenge of integrating a DSE stagein existing workflows, particularly due to the difficulty of an-alyzing error and electrical characteristics with feasible run-times.
DOI: 10.15468/dl.3xyzpq
title: Occurrence Download

description: A dataset containing 356960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-41.21367 -9.60275,-33.23543 -9.60275,-33.23543 -6.54098,-37.07735 -5.90802,-41.21367 -6.54098,-41.21367 -9.60275))"
 ]
}

 The dataset includes 356960 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037361-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9ynd7
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paracles fusca Walker, 1856"
 ]
}

 The dataset includes 111 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037362-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mp9gjb
title: Occurrence Download

description: A dataset containing 4438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "StateProvince is one of (MARYLAND?, Maryland, Maryland (MD), Maryland (State))",
 "TaxonKey is Pentatomidae"
 ]
}

 The dataset includes 4438 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037363-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.672c72
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Canada",
 "Country is Canada"
 ]
 },
 "TaxonKey is one of (Populus ×berolinensis K.Koch)"
 ]
}

 The dataset includes 9 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037364-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rkbt7
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum brachypodum Diels"
 ]
}

 The dataset includes 186 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037365-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14410214
title: KinomeGCN: A Graph Convolutional Network Framework for Kinase-Molecule Interaction Prediction Using Protein Domain Residuals and Molecular Atomic Features with Uncertainty Estimation
DOI: 10.5281/zenodo.14410215
title: KinomeGCN: A Graph Convolutional Network Framework for Kinase-Molecule Interaction Prediction Using Protein Domain Residuals and Molecular Atomic Features with Uncertainty Estimation
DOI: 10.15468/dl.q5949g
title: Occurrence Download

description: A dataset containing 467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum pendulum N.Busch"
 ]
}

 The dataset includes 467 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037366-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5w2bzr
title: Occurrence Download

description: A dataset containing 636 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aconitum tanguticum (Maxim.) Stapf"
 ]
}

 The dataset includes 636 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037368-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qd6g7
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "OccurrenceStatus is Present",
 "TaxonKey is Gulo gulo (Linnaeus, 1758)"
 ]
}

 The dataset includes 122 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037369-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24556769
title: The <i>Erysiphe alphitoides</i> complex (powdery mildews) – unravelling the phylogeny and taxonomy of an intricate assemblage of species

description: Powdery mildews on oaks, caused by <i>Erysiphe</i> species, have serious ecological consequences on a range of <i>Quercus</i> hosts. In addition to <i>Erysiphe quercicola</i>, <i>E. alphitoides</i> is one of the most common and widespread species of <i>Erysiphe</i> having a wide host range among oak species, and a clear economic significance in applied ecology, forestry, and forest pathology. There are many publications addressing these important tree pathogens. Previous phylogenetic examinations have shown that <i>E. alphitoides</i> refers to a complicated species assemblage with insufficient taxonomic resolution in ITS + 28S analyses; the associated sequences form an insufficiently resolved species complex. The majority of species within the <i>E. alphitoides</i> complex cannot be unequivocally identified based solely on ITS + 28S analyses. Most of the additional species of the <i>E. alphitoides</i> complex are distributed in Asia, with a concentration in Japan. The question posed is whether there is a single widespread powdery mildew species, <i>E. alphitoides,</i> or an assemblage of closely allied species. To answer this question, specimens of related recognized species, particularly those from Japan, have been subjected to phylogenetic multilocus examinations, including <i>CAM</i>, <i>GAPDH</i>, <i>GS</i>, ITS + 28S, <i>RPB2</i>, and <i>TUB</i> sequences. An analysis of the concatenated sequences resulted in the confirmation of several distinct species. These species form highly supported clades that include <i>E. alphitoides</i>, <i>E. aucubae</i>, <i>E. euonymicola</i>, <i>E. ipomoeae</i>, <i>E. menispermi</i> var. <i>dahurica</i>, <i>E. orixae</i>, <i>E. pseudolonicerae</i>, <i>E. sinomenii</i> and <i>E. wallrothii</i>. <i>Erysiphe akebiae</i> as well as the relationship between Japanese and North American collections requires further examinations.
DOI: 10.6084/m9.figshare.24556769.v1
title: The <i>Erysiphe alphitoides</i> complex (powdery mildews) – unravelling the phylogeny and taxonomy of an intricate assemblage of species

description: Powdery mildews on oaks, caused by <i>Erysiphe</i> species, have serious ecological consequences on a range of <i>Quercus</i> hosts. In addition to <i>Erysiphe quercicola</i>, <i>E. alphitoides</i> is one of the most common and widespread species of <i>Erysiphe</i> having a wide host range among oak species, and a clear economic significance in applied ecology, forestry, and forest pathology. There are many publications addressing these important tree pathogens. Previous phylogenetic examinations have shown that <i>E. alphitoides</i> refers to a complicated species assemblage with insufficient taxonomic resolution in ITS + 28S analyses; the associated sequences form an insufficiently resolved species complex. The majority of species within the <i>E. alphitoides</i> complex cannot be unequivocally identified based solely on ITS + 28S analyses. Most of the additional species of the <i>E. alphitoides</i> complex are distributed in Asia, with a concentration in Japan. The question posed is whether there is a single widespread powdery mildew species, <i>E. alphitoides,</i> or an assemblage of closely allied species. To answer this question, specimens of related recognized species, particularly those from Japan, have been subjected to phylogenetic multilocus examinations, including <i>CAM</i>, <i>GAPDH</i>, <i>GS</i>, ITS + 28S, <i>RPB2</i>, and <i>TUB</i> sequences. An analysis of the concatenated sequences resulted in the confirmation of several distinct species. These species form highly supported clades that include <i>E. alphitoides</i>, <i>E. aucubae</i>, <i>E. euonymicola</i>, <i>E. ipomoeae</i>, <i>E. menispermi</i> var. <i>dahurica</i>, <i>E. orixae</i>, <i>E. pseudolonicerae</i>, <i>E. sinomenii</i> and <i>E. wallrothii</i>. <i>Erysiphe akebiae</i> as well as the relationship between Japanese and North American collections requires further examinations.
DOI: 10.6084/m9.figshare.20509721
title: Identification of late Holocene kōwhai (<i>Sophora</i>, Leguminosae) seeds from Central Otago dry rock shelters using nuclear DNA markers

description: Central Otago is one of the driest regions of New Zealand, with much of the natural vegetation lost to fires dating from the thirteenth century AD and agricultural land clearance in the nineteenth and twentieth centuries. Plant macrofossil records provide insights into the prehuman vegetation communities. Kōwhai (<i>Sophora</i> spp.) has been recognised as an important historical component of the natural vegetation of the Kawarau, Cromwell and Roxburgh Gorges of Central Otago. However, plant macrofossils are usually incomplete and this has created some uncertainty in identification of the <i>Sophora</i> species present. In different studies, leaflet and seed macrofossils have been identified as <i>S. microphylla</i>, <i>S. prostrata</i> and indeterminate <i>Sophora</i> species. <i>Sophora prostrata</i> has been recognised from Gibraltar Rock (Cromwell Gorge) based on macrofossil seeds having a brown-black testa, not the yellow testa characteristic of <i>S. microphylla</i> seeds. Late Holocene kōwhai seeds from other Central Otago locations are also brown-black. We extracted and sequenced nuclear DNA from four brown-black macrofossil <i>Sophora</i> seeds collected from Cairnmuir Gully rock shelter B (Cromwell Gorge) and Devils Creek rock shelter (Lake Dunstan), Central Otago. None of the seeds had SNP variants that are unique to <i>S. prostrata</i>, meaning they are most likely to be <i>S. microphylla</i>, the only other <i>Sophora</i> species that occurs in southern South Island and the only species persisting in Central Otago today. Furthermore, seeds of <i>S. prostrata</i> and <i>S. microphylla</i> have a different sized hilum. Seeds from Cairnmuir Gully rock shelter B, Devils Creek and Firewood Creek rock shelters have a hilum length consistent with <i>S. microphylla</i> and outside the range of <i>S. prostrata</i>. We conclude <i>S. microphylla</i> is historically and currently the only species of kōwhai in Central Otago and that the testa colour of its seeds can change from yellow to brown-black over long time periods.
DOI: 10.6084/m9.figshare.20509721.v1
title: Identification of late Holocene kōwhai (<i>Sophora</i>, Leguminosae) seeds from Central Otago dry rock shelters using nuclear DNA markers

description: Central Otago is one of the driest regions of New Zealand, with much of the natural vegetation lost to fires dating from the thirteenth century AD and agricultural land clearance in the nineteenth and twentieth centuries. Plant macrofossil records provide insights into the prehuman vegetation communities. Kōwhai (<i>Sophora</i> spp.) has been recognised as an important historical component of the natural vegetation of the Kawarau, Cromwell and Roxburgh Gorges of Central Otago. However, plant macrofossils are usually incomplete and this has created some uncertainty in identification of the <i>Sophora</i> species present. In different studies, leaflet and seed macrofossils have been identified as <i>S. microphylla</i>, <i>S. prostrata</i> and indeterminate <i>Sophora</i> species. <i>Sophora prostrata</i> has been recognised from Gibraltar Rock (Cromwell Gorge) based on macrofossil seeds having a brown-black testa, not the yellow testa characteristic of <i>S. microphylla</i> seeds. Late Holocene kōwhai seeds from other Central Otago locations are also brown-black. We extracted and sequenced nuclear DNA from four brown-black macrofossil <i>Sophora</i> seeds collected from Cairnmuir Gully rock shelter B (Cromwell Gorge) and Devils Creek rock shelter (Lake Dunstan), Central Otago. None of the seeds had SNP variants that are unique to <i>S. prostrata</i>, meaning they are most likely to be <i>S. microphylla</i>, the only other <i>Sophora</i> species that occurs in southern South Island and the only species persisting in Central Otago today. Furthermore, seeds of <i>S. prostrata</i> and <i>S. microphylla</i> have a different sized hilum. Seeds from Cairnmuir Gully rock shelter B, Devils Creek and Firewood Creek rock shelters have a hilum length consistent with <i>S. microphylla</i> and outside the range of <i>S. prostrata</i>. We conclude <i>S. microphylla</i> is historically and currently the only species of kōwhai in Central Otago and that the testa colour of its seeds can change from yellow to brown-black over long time periods.
DOI: 10.6084/m9.figshare.22494334
title: Adonis mongolica.fas

description: <i>Cerastium davuricum</i> chloroplast, complete genome
DOI: 10.6084/m9.figshare.22494334.v1
title: Adonis mongolica.fas

description: <i>Cerastium davuricum</i> chloroplast, complete genome
DOI: 10.6084/m9.figshare.28021724.v6
title: <b>A comparision of single-cell RNA velocity methods</b>

description: In this study, we presented a framework to systematically benchmark 15 RNA velocity methods from the perspective of accuracy, scalability and stability. To ensure the comprehensiveness and reliability of the comparison, 72 simulated datasets and 189 real datasets under various scenarios are included in our framework. Moreover, we proposed an integrated tool, VeloGIF, allowing users to obtain results from 15 RNA velocity calculation tools simultaneously.
DOI: 10.15468/dl.bxjf6u
title: Occurrence Download

description: A dataset containing 784 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad de Veracruz: Oligochaeta. Annelida"
 ]
}

 The dataset includes 784 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037370-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qw6hdt
title: Occurrence Download

description: A dataset containing 701 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dracocephalum tanguticum Maxim."
 ]
}

 The dataset includes 701 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037371-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byrndj
title: Occurrence Download

description: A dataset containing 29282 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Drosera peltata Thunb."
 ]
}

 The dataset includes 29282 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037372-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28039394
title: heat urban project data

description: urban heat project data
DOI: 10.6084/m9.figshare.28039394.v1
title: heat urban project data

description: urban heat project data
DOI: 10.5281/zenodo.10911584
title: MTClass: Identification and annotation of multi-phenotype cis-eQTLs using machine learning

description: This dataset contains the aggregated results from three iterations of MTClass. Brief descriptions of the file names are below:



multi-tissue.zip: Multi-tissue study containing the 9-tissue, 13 brain tissue, and 48-tissue results from MTClass, MultiPhen, and MANOVA

multi-exon.zip: Multi-exon study containing the multi-exon results from the 13 individual brain tissues (MTClass, MultiPhen, and MANOVA for each tissue)

2D_exon_tissue.zip: Multi-tissue/multi-exon combined eQTL study, done in 9 tissues using multi-layer perceptron. MTClass was only run once on this dataset due to the relatively higher computational burden.

PsychENCODE_isoQTL.zip: Multi-isoform eQTL study, done in human prefrontal cortex using PsychENCODE data.

OneK1K_scRNAseq.zip: Multi-cell-type eQTL study, done using scRNA-seq data from the OneK1K cohort.
DOI: 10.5281/zenodo.8169100
title: MTClass: Identification and annotation of multi-phenotype cis-eQTLs using machine learning

description: This dataset contains the aggregated results from three iterations of MTClass. Brief descriptions of the file names are below:



multi-tissue.zip: Multi-tissue study containing the 9-tissue, 13 brain tissue, and 48-tissue results from MTClass, MultiPhen, and MANOVA

multi-exon.zip: Multi-exon study containing the multi-exon results from the 13 individual brain tissues (MTClass, MultiPhen, and MANOVA for each tissue)

2D_exon_tissue.zip: Multi-tissue/multi-exon combined eQTL study, done in 9 tissues using multi-layer perceptron. MTClass was only run once on this dataset due to the relatively higher computational burden.

PsychENCODE_isoQTL.zip: Multi-isoform eQTL study, done in human prefrontal cortex using PsychENCODE data.

OneK1K_scRNAseq.zip: Multi-cell-type eQTL study, done using scRNA-seq data from the OneK1K cohort.
DOI: 10.15468/dl.g6h82v
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isodon macrocalyx (Dunn) Kudô"
 ]
}

 The dataset includes 170 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037373-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dacgd3
title: Occurrence Download

description: A dataset containing 194 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia foenum-graecum Hance"
 ]
}

 The dataset includes 194 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037374-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14504025
title: Artificial Intelligence Techniques for Diagnosing and Quantifying Vitiligo: A Systematic Review
DOI: 10.5281/zenodo.14504024
title: Artificial Intelligence Techniques for Diagnosing and Quantifying Vitiligo: A Systematic Review
DOI: 10.6084/m9.figshare.28021724.v7
title: <b>A comparision of single-cell RNA velocity methods</b>

description: In this study, we presented a framework to systematically benchmark 15 RNA velocity methods from the perspective of accuracy, scalability and stability. To ensure the comprehensiveness and reliability of the comparison, 72 simulated datasets and 189 real datasets under various scenarios are included in our framework. Moreover, we proposed an integrated tool, VeloGIF, allowing users to obtain results from 15 RNA velocity calculation tools simultaneously.
DOI: 10.25345/c5wp9tk0f
title: MassIVE MSV000096671 - Dynamic Expression of the Zebrafish (Danio rerio) Proteome Across Early Larval Development
title: Here, we characterize proteome expression patterns in larval zebrafish at 4-, 7- and 10 dpf using bottom-up shotgun proteomics
DOI: 10.15468/dl.8nrtd6
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxytropis falcata Bunge"
 ]
}

 The dataset includes 226 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037375-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4ju2h
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia mussotii Franch."
 ]
}

 The dataset includes 176 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037376-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3djfq
title: Occurrence Download

description: A dataset containing 941 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trollius chinensis Bunge"
 ]
}

 The dataset includes 941 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037377-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.