cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27989369.v1
title: 鄱阳湖日尺度水数据集

description: 1. 本数据集是鄱阳湖 2016 年日尺度水数据集.2. 整个数据集分为两部分，包括观测数据集和预测数据集。观测数据集的命名格式为 “PYwater_date_uni_eli”，预测数据集的命名格式为 “PYwater_date_pre”。3. 来自光学影像的数据具有用于区分水体和非水体的属性 water，来自微波影像的数据具有用于区分水体和非水体的属性 SWI，预测数据集具有用于区分水体和非水体的属性 water。
DOI: 10.6084/m9.figshare.26764714.v1
title: Multi-frequency steady-state visual evoked potential dataset in the augmented reality environment using a portable stimulation device (raw data)

description: Steady-state visual evoked potential (SSVEP)-based brain-computer interfaces (BCIs) with high transfer rate have demonstrated great promise for practical applications. Existing researches have implemented augmented reality (AR)-based SSVEP-BCIs with single- or dual-frequency stimulation. However, few studies have discussed the stimulation parameters setting of portable stimulation devices systematically. This dataset aims to facilitate the study of single/dual-frequency AR-SSVEP-BCI by making SSVEP signals collected with different stimulation settings publicly available. In this dataset, the stimulation parameters were set with three differences: (1) frequency range, (2) frequency and phase, and (3) different frequency. SSVEPs were collected from 14, 14, and 17 participants through the experiment by single-, dual-frequency stimuli and different variants of frequency and phase.
DOI: 10.6084/m9.figshare.7756583.v5
title: Supp_Lautaoja2019

description: Supplementary material for the article:<b>Muscle and serum metabolomes are dysregulated in colon-26 tumor-bearing mice despite amelioration of cachexia with activin receptor type 2B ligand blockade. </b><b>Lautaoja JH, Lalowski M, Nissinen TA, Hentilä J, Shi Y, Ritvos O,<sup> </sup>Cheng S, Hulmi JJ. </b><i>American Journal of Physiology-Endocrinology and Metabolism</i> (2019).
DOI: 10.6084/m9.figshare.16438908.v1
title: Probes of capture of flanking regions at the S locus and control regions in A. halleri

description: We restricted our study to the entire S locus, i.e. the SCR and SRK genes with the intergenic regions, the flanking regions of the S locus and the control regions. The region of the S locus designed from the entire SRK sequences (n = 21) or partial SRK sequences of the S domain of SRK (n = 102, mean = 56% of the S domain) of different Brassicaceae species (A. halleri, A .lyrata, A. thaliana, A. kamchatica, Capsella grandiflora, C. rubella, Brassica rapa, B. oleracea). The fasta sequences are available on the database. The regions flanking at the S locus represent the 100,000 kb on either side of the S locus on two BAC clones of A. halleri. The control regions represent 25 kb regions having the same density of genes and transposable elements (TEs) as the flanking regions (+/- 10%) drawn at random from the genome of A. halleri. The fasta sequences are available on the database (ARABIDOPSIS-.input-seq.fas).<br>The design and the synthesis of the probes were carried out by Mybaits with K-mers of 120 bp (ARABIDOPSIS-bait-120-60.fas). In order to ensure the specificity of the probes defined, we excluded TE from a set of transposable elements annotated in A. halleri and A. lyrata (Legrand et al., 2019), excluding 100 bp on both sides. of each sequence identified as repeated. We constructed probes with a recovery rate of 1.15, finally for a total of 48,127 probes (lit file). We verified that all target sites in the regions of interest such as the S locus genes were covered by at least one probe. Collectively, our initial goal was to cover at least 4.1MB per region. After excluding sites of low complexity and sites for which probes could not be defined, our sequence capture device covers 3.8 Mb (1.48%) of the genome of A. halleri.<br><b>ARABIDOPSIS-.input-seq.fas=&gt; fasta files with all regions studied in A. halleri and other brassicacees, based on BAC clones and the reference of A. halleri genome </b><b><br></b><b>ARABIDOPSIS-bait-120-60.fas=&gt; fasta file with all probes designed by MyBaits </b><b><br></b><b>ARABIDOPSIS-bait-120-60-stringent_0RM.bed=&gt; bed files with conserved probes</b><br><br>
DOI: 10.6084/m9.figshare.26999251.v1
title: rVSV-SHC014-CoV Rescue Pictures

description: Raw images of recovery attempts of recombinant vesicular stomatitis virus (rVSV) bearing SHC014-CoV spike either WT or A835D.
DOI: 10.6084/m9.figshare.5100619.v4
title: Abies cilicica chorology

description: Distribution map of Cilician fir (<i>Abies cilicica</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.5307364.v1
title: Power Plant Satellite Imagery Dataset

description: This dataset contains satellite imagery of 4,454 power plants within the United States. The imagery is provided at two resolutions: 1m (4-band NAIP iamgery with near-infrared) and 30m (Landsat 8, pansharpened to 15m). The NAIP imagery is available for the U.S. and Landsat 8 is available globally. This dataset may be of value for computer vision work, machine learning, as well as energy and environmental analyses.<br>Additionally, annotations of the specific locations of the spatial extent of the power plants in each image is provided. These annotations were collected via the crowdsourcing platform, Amazon Mechanical Turk, using multiple annotators for each image to ensure quality. Links to the sources of the imagery data, the annotation tool, and the team that created the dataset are included in the "References" section.<br>To read more on these data, please refer to the "Power Plant Satellite Imagery Dataset Overview.pdf" file. To download a sample of the data without downloading the entire dataset, download "sample.zip" which includes two sample powerplants and the NAIP, Landsat 8, and binary annotations for each.<br><br>Note: the NAIP imagery may appear "washed out" when viewed in standard image viewing software because it includes a near-infrared band in addition to the standard RGB data.<br><br><br>
DOI: 10.17605/osf.io/vz5up
title: Pig locomotion

description: Automated image analysis for scoring leg conformation and locomotion in growing pigs
DOI: 10.17632/yhk4tzbcd5
title: EMIRS water-ice cloud optical depth retrievals across the full diurnal cycle at Mars

description: Approximately two million thermal infrared spectra from the Emirates Mars Infrared Spectrometer (EMIRS) were utilized for this dataset [Ls ≈ 49° in Mars Year (MY) 36 through Ls ≈ 347° in MY 37; approx. May 2021–October 2024]. Results are stored as a self describing NetCDF4 file (https://www.unidata.ucar.edu/software/netcdf/).

The root group contains retrieval output for each spectrum. Variable descriptions are included in the file archive. Coordinate variables associated with the observation are latitude, longitude, solar longitude, local true solar time, emission angle of the observation, solar incidence angle of the observation, and the spacecraft clock timestamp when the observation was made. Output from the aerosol retrieval are stored as data variables and include the surface temperature, water-ice optical depth, water-ice optical depth uncertainty, surface anisothermality "slope" correction parameter, surface emissivity correction parameter, and estimated water condensation level. Spectra included in this dataset are those observations which passed quality checks for the water-ice optical depth retrieval.

Additional uncertainty weighted mean values for water-ice optical depth averaged across various coordinate dimensions are included as NetCDF4 groups. These groups correspond to selected figures shown in the accompanying manuscript for this dataset, and can be used to reconstruct the figures or compare against other datasets or results.

As an example, the full dataset can be opened using python and xarray (v2024.10.0 or greater) as an xarray DataTree with the following:
import xarray as xr
emirs_data = xr.open_datatree('EMIRS_tauice_dataset.nc')

Description of the retrieval and data in this archive can be found in the accompanying manuscript for this dataset:
"The Full Diurnal Cycle of Mars Water-Ice Cloud Optical Depth in EMIRS Observations" by Samuel A. Atwood, Michael D. Smith, Michael J. Wolff, and Christopher S. Edwards, submitted to JGR-Planets.
DOI: 10.6084/m9.figshare.11452299.v1
title: Cation Vacancies in NiFe2O4 During Heat Treatments at High Temperatures: Structural, Morphological and Magnetic Characterization

description: Nickel ferrite (NiFe2O4) was synthesized by mixing stoichiometric amounts of α-Fe2O3 and NiO using mechanical milling and heat treatments at high temperatures. The physical characterization of the samples was carried out using X-ray diffraction, infrared and Raman spectroscopies, Mössbauer spectrometry, magnetization measurements, scanning electron microscopy and energy dispersive X-ray spectroscopy. We found that NiFe2O4 production increases from 81 to 100 wt. % with increasing temperature. Additionally, the lattice parameter and the saturation magnetization increase with increasing temperature. On the other hand, Mössbauer spectrometry showed that there is a decrease in the subspectral areas ratio for Fe3+ cations at tetrahedral (A) and octahedral [B] sites, AA/AB, with the increase of the temperature. In the SEM micrographs it was observed that the samples consisted of particles with irregular shapes and micrometric sizes. From IR spectra, the intensity of the 411 cm-1 band (vibrations at octahedral sites) increases relative to the intensity of the 599 cm-1 band (vibrations at tetrahedral sites) with increasing temperature. From the results obtained in the magnetization curves, it was possible to confirm the synthesis of NiFe2O4. As the heat treatment temperature increases, hysteresis loops with S-type geometric forms were obtained. All the results suggest that a defective spinel NiFe2O4 is formed at 1000 °C, and that as the temperature increases, the defects gradually disappear. Neither cation reordering phenomena nor possible evaporation of chemical elements were the dominant effects to account for the results. The results can be explained if it is assumed that [B]-sites cation vacancies are gradually filled with cations as the temperature of the heat treatment increases.
DOI: 10.6084/m9.figshare.28068029.v1
title: Community development in Ekiti

description: Data on how informal user fees affect community development
DOI: 10.6084/m9.figshare.28443032.v2
title: Sleep Deprivation and the Gut Microbiome: A Systematic Review and Meta-Analysis for Gut microbes review

description: Sleep Deprivation and the Gut Microbiome: A Systematic Review and Meta-Analysis for Gut microbes review
DOI: 10.17632/bnf3mgrbjc
title: Data for: Polyhydroxybutyrate and glycogen production in photobioreactors inoculated with wastewater borne cyanobacteria monocultures

description: This file contains all the experimental data obtained related with the manuscript "Polyhydroxybutyrate and glycogen production in photobioreactors inoculated with wastewater borne cyanobacteria monocultures". The file is divided in different spreadsheets. Spreadsheets are grouped in colours depending at which photobioreactor they correspond to. Orange correspond to Synechocystis sp. results, purple to Synechococcus sp results and blue to mixed culture. Each reactor has three spread sheets where the results corresponding to the concentrations of different forms of carbon, nutrients and the total suspended solids can be found. Finally, there is a general spreadsheet with the PHB and Glycogen results from all PBRs.
DOI: 10.6084/m9.figshare.12867305.v1
title: Brain mass, body mass and population density in mammals

description: Datasets and R scripts from González-Suárez, M; Gonzalez-Voyer, A; von Hardenberg, A; Santini, L (2021) The role of brain size on mammalian population densities Journal of Animal Ecology, 90: 653– 661. DOI: 10.1111/1365-2656.13397<br>Additional details in the README.pdf file<br> SUMMARY OF FILES INCLUDED - CSV datasets: total 21 files representing · 12 csv datasets from other sources (described below) with brain and body mass data in the zip file Brain and Mass data. · Six csv datasets from other sources and compilations (described below) with population density and diet information · Two csv files (Complete_dataset_published.csv, Brain_data_compilation_published.csv) produced during this study. Details of the files and the compilation protocol are provided in the README file. - R scripts: three scripts that describe the protocols to: combine brain and body mass data (brain_data_compilation_published.Rmd), combine all sources (Joining_all_data_published.Rmd), and analyse and produce tables and figures presented in the manuscript (Data_analysesPPA_published.Rmd). <br>
DOI: 10.6084/m9.figshare.12927545.v1
title: Metabolomics - Raw metabolites datasets

description: Raw datasets of abundances of identified metabolites. "raw data long_cleaned" is the dataset in a long format, with each column representing a different variable. "raw full data_no duplo" is the dataset in a wide format, where each column is an individual bird, while metabolites are on different rows.
DOI: 10.6084/m9.figshare.14068892.v2
title: Online Supplementary Material of "Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution"

description: 78-individual-plastid-gene alignments of 264 orchid species (fasta formatted alignments, compressed into a zip file) and supplementary tables S1-S5 (xlsx format).
DOI: 10.6084/m9.figshare.15052296.v1
title: Supplementary Material for: Proposal for Standardization of Primary and Secondary Outcomes in Patients with Active, Moderate-to-Severe Graves’ Orbitopathy

description: Standardization of treatment outcomes in randomized clinical trials (RCTs) for active, moderate-to-severe Graves’ orbitopathy (GO) is needed to make results of different RCTs comparable and to draw sound conclusions on the efficacy of a given treatment. Both subjective patient-reported outcome (PRO) and objective clinician-reported outcome (CRO) are important in this regard. In this paper, it is proposed that primary PRO should be the evaluation of treatment-related changes in the quality of life by the use of a validated and disease-specific questionnaire (GO-QoL). The proposed primary CRO is a revised composite index, which includes only objective items and provides an overall assessment of the effects of treatment. Secondary outcomes should also be provided in RCTs to show the effects of treatment on individual features of GO, as well on persistence of activity (by the 7-item Clinical Activity Score), safety, relapses of GO, need for subsequent medical and/or surgical treatments, and other indicators (orbital volume, cytokines, TSH receptor antibody levels). Assessment of the overall response to treatment by primary and secondary outcomes should be made 3 months after treatment completion.
DOI: 10.6084/m9.figshare.7285019.v1
title: Istanbul data.rar

description: This folder contains the data associated with simplified and southwestern Istanbul, including nodes, traversal and clearing times and set of blocked edges. For more information, please read this paper: https://doi.org/10.1016/j.ejor.2019.03.024
DOI: 10.17632/7nnvbr35np
title: Retrospective analysis of sepsis in cutaneous T-cell lymphoma reveals significantly greater risk for Black patients

description: Supplementary files for retrospective cohort study investigating sepsis in cutaneous T-cell lymphoma (CTCL) and non-CTCL non-Hodgkin lymphoma patients at a single large academic medical center
DOI: 10.17632/zz7r5y4dc6
title: AI-MedLeafX: A Large-Scale Computer Vision Dataset for Medicinal Plant Diagnosis

description: The AI-MedLeafX dataset is a curated collection of 10,858 original images and 65,178 augmented images of medicinal plant leaves, categorized into healthy and diseased conditions. The dataset primarily focuses on four medicinal plant species—Cinnamomum camphora, Terminalia Chebula, Moringa Oleifera, and Azadirachta Indica—and covers common leaf diseases such as Bacterial Spot, Shot Hole, Powdery Mildew, and Yellow Leaf Disease.

Category:
1. Cinnamomum Camphora Healthy Leaf: 800
2. Cinnamomum Camphora Bacterial Spot: 801
3. Cinnamomum Camphora Shot Hole: 795
4. Terminalia Chebula Bacterial Spot: 803
5. Terminalia Chebula Healthy Leaf: 816
6. Terminalia Chebula Shot Hole: 802
7. Moringa Oleifera Healthy Leaf: 860
8. Moringa Oleifera Bacterial Spot: 804 
9. Moringa Oleifera Yellow Leaf: 814 
10. Azadirachta Indica Healthy Leaf: 1021
11. Azadirachta Indica Shot Hole: 834
12. Azadirachta indica Powdery Mildew: 854
13. Azadirachta indica Yellow Leaf: 854

Total: 10,858

This dataset is designed to facilitate machine learning (ML), deep learning (DL), and computer vision (CV) applications in plant disease recognition, aiding automated medicinal plant health monitoring and disease classification systems.

The images were collected from the following locations in Dhaka, Bangladesh:

- National Botanical Garden (Latitude: 23.8110° N, Longitude: 90.3563° E)
- Daffodil Smart City (Latitude: 23.8720° N, Longitude: 90.2686° E)

The AI-MedLeafX dataset contributes to the advancement of computer vision in plant pathology and can be extended for research in precision agriculture, herbal medicine authentication, and disease diagnosis.
DOI: 10.6084/m9.figshare.21346041.v1
title: Brazil Data S1 from Genomic evidence for ancient human migration routes along South America's Atlantic coast

description: An increasing body of archaeological and genomic evidence has hinted to a complex settlement process of the Americas by humans. This is especially true for South America, where unexpected ancestral signals have raised perplexing scenarios for the early migrations into different regions of the continent. Here, we present ancient human genomes from the archaeologically rich Northeast Brazil and compare them to ancient and present-day genomic data. We find a distinct relationship between ancient genomes from Northeast Brazil, Lagoa Santa, Uruguay and Panama, representing evidence for ancient migration routes along South America's Atlantic coast. To further add to the existing complexity, we also detect greater Denisovan than Neanderthal ancestry in ancient Uruguay and Panama individuals. Moreover, we find a strong Australasian signal in an ancient genome from Panama. This work sheds light on the deep demographic history of eastern South America and presents a starting point for future fine-scale investigations on the regional level.
DOI: 10.6084/m9.figshare.22491274.v1
title: Evaluating Factors Influencing Customers’ Intention to Eat Korean Cuisine “Samgyeopsal” in the Philippines

description: This is the raw data of research entitled "<strong>Evaluating Factors Influencing Customers’ Intention to Eat Korean Cuisine “Samgyeopsal” in the Philippines: A Structural Equation Model Forest Classifier Approach</strong>"
DOI: 10.6084/m9.figshare.28373245.v1
title: Prevalence and Risk Factors of Age-Related Macular Degeneration in South Korea: Korea National Health and Nutrition Examination Survey

description: To evaluate the prevalence and risk factors of age-related macular degeneration (AMD) in the Korean population. In this cross-sectional study based on the Korea National Health and Nutrition Examination Survey (2017–2020) data 13,737 participants aged ≥ 40 years with assessable fundus images were included. The prevalence and risk factors of AMD were evaluated. The prevalence of early AMD, geographic atrophy (GA), and neovascular AMD were also assessed. Logistic regression analyses were used to identify risk factors. The prevalence (95% confidence interval [CI]) of AMD was 13.94% (13.15–14.72). The prevalence (95% CI) of early AMD, GA, and neovascular AMD was 13.07% (12.29–13.85), 0.26% (0.17–0.35), and 0.61% (0.47–0.75), respectively. The prevalence increased with age; it was 3.61%, 11.33%, 20.31%, 31.37%, and 33.98% in participants in their 40s, 50s, 60s, 70s, and ≥ 80 years, respectively. In multivariate analysis, AMD was positively associated with older age (<i>p</i> &lt; 0.001; odds ratio [OR], 1.08; 95% CI, 1.07–1.09), male sex (<i>p</i> = 0.014; OR, 1.27; 95% CI, 1.05–1.53), and lower degree of education (<i>p</i> &lt; 0.001; OR, 1.36 (for junior high school graduates); 95% CI, 1.12–1.65). AMD was detected in approximately one-third of individuals aged ≥ 70 years, thus indicating that AMD is a common disease among older Koreans. Regular fundus examinations in populations with risk factors for AMD as well as education on methods to prevent or delay AMD progression, such as the Mediterranean diet, are necessary.
DOI: 10.6084/m9.figshare.3555759.v1
title: Data Paper. Data Paper

description: File List Three data sets and associated metadata are presented in the following files. <b>Small mammals:</b> <i> Data files --</i>Fray_Jorge_Small_Mammals_198903-200512.txt <i>Metadata --</i>Fray_Jorge_Small_Mammal_Metadata.php <b>Vegetation:</b> <i> Data files --</i> Fray_Jorge_Annuals_1989-2005.txt Fray_Jorge_Perennials_1989-2005.txt Fray_Jorge_Seeds_1989-2002.txt Fray_Jorge_Seeds_2003-2005 I.txt Fray_Jorge_Seeds_2003-2005 II.txt <i>Metadata --</i>Fray_Jorge_Plant_Metadata.php <b>Precipitation:</b> <i> Data files --</i> Fray_Jorge_Precipitation_1989-2005.csv <i>Metadata --</i> Fray_Jorge_Precipitation_Metadata.php Description The data set covers a 16-year period (1989–2005) of monthly small-mammal surveys and associated habitat and environmental data. Small mammals are trapped every month on all experimental plots, and both ephemeral and perennial plant cover and soil seed bank composition are measured at regular intervals. Rainfall is recorded and compiled annually (through 1998) or monthly; information on captured small mammals and on all vegetative and rainfall data are contained in associated files. These data have been applied to diverse population- and community-level analyses and remain useful for investigations of population dynamics, species interactions, and the relative influence of biotic and abiotic factors. Sampling is ongoing and data will be added over time. <i>Key words: biotic vs. abiotic interactions; climate; competition; ENSO; ephemeral plant cover; LTREB data; predation; semiarid ecosystem; shrub cover; small mammals.</i>