cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5931381
title: Avizo reconstruction of Bone-cracking Borophagus coprolite lacm:vp:158706

description: Borophagine canids have long been hypothesized to be North American ecological ‘avatars’ of living hyenas in Africa and Asia, but direct fossil evidence of hyena-like bone consumption is hitherto unknown. We report rare coprolites (fossilized feces) of Borophagus parvus from the late Miocene of California and, for the first time, describe unambiguous evidence that these predatory canids ingested large amounts of bone. Surface morphology, micro-CT analyses, and contextual information reveal (1) droppings in concentrations signifying scent-marking behavior, similar to latrines used by living social carnivorans; (2) routine consumption of skeletons; (3) undissolved bones inside coprolites indicating gastrointestinal similarity to modern striped and brown hyenas; (4) B. parvus body weight of ~24 kg, reaching sizes of obligatory large-prey hunters; and (5) prey size ranging ~35–100 kg. This combination of traits suggests that bone-crushing Borophagus potentially hunted in collaborative social groups and occupied a niche no longer present in North American ecosystems.
description: {"references": ["Wang et al. eLife 2018;7:e34773", "https://doi.org/10.7554/eLife.34773"]}
DOI: 10.5281/zenodo.5931380
title: Avizo reconstruction of Bone-cracking Borophagus coprolite lacm:vp:158706

description: Borophagine canids have long been hypothesized to be North American ecological ‘avatars’ of living hyenas in Africa and Asia, but direct fossil evidence of hyena-like bone consumption is hitherto unknown. We report rare coprolites (fossilized feces) of Borophagus parvus from the late Miocene of California and, for the first time, describe unambiguous evidence that these predatory canids ingested large amounts of bone. Surface morphology, micro-CT analyses, and contextual information reveal (1) droppings in concentrations signifying scent-marking behavior, similar to latrines used by living social carnivorans; (2) routine consumption of skeletons; (3) undissolved bones inside coprolites indicating gastrointestinal similarity to modern striped and brown hyenas; (4) B. parvus body weight of ~24 kg, reaching sizes of obligatory large-prey hunters; and (5) prey size ranging ~35–100 kg. This combination of traits suggests that bone-crushing Borophagus potentially hunted in collaborative social groups and occupied a niche no longer present in North American ecosystems.
description: {"references": ["Wang et al. eLife 2018;7:e34773", "https://doi.org/10.7554/eLife.34773"]}
DOI: 10.17632/nx94z23388.1
title: Data on the association of serum glypican-4 with prevalent and future kidney function

description: The present study included 456 patients who were referred to elective coronary angiography. Serum GPC4 levels were measured with a commercially available ELSIA kit. Glomerular filtration rate (GFR) was estimated (eGFR) using the ‘Chronic Kidney Disease Epidemiology Collaboration’ (CKD-EPI) serum creatinine equation. GFR categories were defined as follows: G1: eGFR≥90 mL/min/1.73 m2; G2: eGFR=60-89 mL/min/1.73 m2; G3a: eGFR=45-59 mL/min/1.73 m2; G3b: eGFR=30-44 mL/min/1.73 m2; G4: eGFR=15-29 mL/min/1.73 m2. Urinary albumin excretion was expressed as ACR in a random morning urine specimen. ACR levels lower than 30 mg/g (category A1) were defined as normal and albuminuria was diagnosed as an ACR of 30 mg/g or greater. CKD was diagnosed in case of eGFR ˂ 60 mL/min/1.73 m2 or albuminuria. After a mean period of 3.5 years, patients were re-invited to undergo a follow-up investigation and kidney function was reassessed. The Table includes baseline characteristics and GPC4 values as well as parameters of kidney function.
DOI: 10.17632/vbk6h8vcyy.1
title: Tissue homeostasis in sponges: quantitative analysis of cell proliferation and apoptosis. Leucosolenia variabilis

description: Here we provide data underlying the upcoming publication "Tissue homeostasis in sponges: quantitative analysis of cell proliferation and apoptosis". 
These data provide a quantitative description of cell proliferation and apoptosis in intact tissues of marine sponge, Leucosolenia variabilis (class Calcarea). Tissues of Leucosolenia are highly proliferative, indicating either high rates of cell turnover or body growth. The main fraction of proliferating cells are choanocytes, food-entrapping flagellated cells of the aquiferous system. They also seem to be the main source of new mesohyl and pinacoderm cells. The numbers of apoptotic cells in intact tissues are insignificant; both choanocytes and mesohyl cells undergo apoptosis.
CLSM folder contains Z-stacks obtained via confocal laser scanning microscope. Z-stacks were processed in Bitplane Imaris software
 and saved in .ems format.
Apoptosis subfolder contains Z-stacks obtained during the experiment "Investigation of apoptotic activity in intact tissues". Tissues are stained with DAPI (channel 1; cell nuclei), CellEvent (channel 2; nuclei of apoptotic cells), anti-acetylated alpha-tubulin antibodies (channel 3; choanocyte flagella).
Intact tissues subfolder contains Z-stacks obtained during the experiment "Study of cell proliferation with CLSM". Tissues are stained with DAPI (channel 1; cell nuclei), EdU (channel 3; 12 hours of incubation; nuclei of S-phase cells), anti-phospho-histone 3 antibodies (channel 4; nuclei of M-phase cells), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella).
In vivo apoptosis subfolder contains Z-stacks obtained during the experiment "Investigation of apoptotic activity in intact tissues". Cell suspension is stained with Hoechst (channel 1; cell nuclei), CellEvent (channel 2; nuclei of apoptotic cells), TMRE (channel 3; functional mitochondria).
Flow cytometry folder contains raw .fcs files.
Cell cycle subfolder contains files obtained during the experiment "Evaluation of cell cycle distribution". Cell suspensions are stained with propidium iodide (PE-A channel).
In vivo apoptosis subfolder contains files obtained during the experiment "Investigation of apoptotic activity in intact tissues". Cell suspensions are stained with CellEvent (FITC-A channel) and TMRE (PE-A channel).
Apoptosis fixed contains files obtained during the experiment "Investigation of apoptotic activity in intact tissues". Cell suspensions are stained with CellEvent (FITC-A channel)
DOI: 10.5281/zenodo.5226666
title: SOILCARE_database1_WP2_SICS_aspects

description: This Excel file contains the information gathered from literature searches regarding meta-analysis studies which published results on the impact of soil improving cropping systems. These impacts were considered for 10 crop husbandry management practices and were split in 5 types (see below). Results pertain to the (relative) effect of a specific management practice compared to a reference (conventional) situation; mostly only the main effects were taken. Early results were used in the WP2 deliverable D2.1 (Oenema et al., 2017; see https://www.soilcare-project.eu/resources/deliverables). Later, results were added due to the increase of new information in the literature. All gathered information is available in sheet 'Table', and formed the basis of a scientific paper (in preparation) to be published in a special issue dedicated to SoilCare. Crop Husbandry management practices:<br> 1. Crop type & crop rotations, including intercropping, cover crops and perennial crops<br> 2. Nutrient management<br> 3. Irrigation + fertigation<br> 4. (Controlled) Drainage<br> 5. Tillage<br> 6. Pest management<br> 7. Weed management<br> 8. Crop residue management & mulching<br> 9. Mechanization & technology<br> 10. Landscape management Areas of interest:<br> a) Agronomic effects (typically: yield, crop quality)<br> b) Soil quality & soil health<br> c) Resource use efficiency (mainly: water, nutrients)<br> d) Economic aspects<br> e) Environmental impacts (mainly: losses of greenhouse gases, and leaching)<br> Originally we also had 'Human health' as area of interest, but since hardly any information was available on this subject, this was no longer considered.
description: {"references": ["Oenema, O., M. Heinen, R. Rietra, and R. Hessel. 2017. A review of soil-improving cropping systems (full report). SoilCare Scientific Report 07, Deliverable D2.1, SoilCare Project, Wageningen Environmental Research, the Netherlands. Available at: https://soilcare-project.eu/downloads/soilcare-reports-and-deliverables"]}
DOI: 10.5281/zenodo.5226665
title: SOILCARE_database1_WP2_SICS_aspects

description: This Excel file contains the information gathered from literature searches regarding meta-analysis studies which published results on the impact of soil improving cropping systems. These impacts were considered for 10 crop husbandry management practices and were split in 5 types (see below). Results pertain to the (relative) effect of a specific management practice compared to a reference (conventional) situation; mostly only the main effects were taken. Early results were used in the WP2 deliverable D2.1 (Oenema et al., 2017; see https://www.soilcare-project.eu/resources/deliverables). Later, results were added due to the increase of new information in the literature. All gathered information is available in sheet 'Table', and formed the basis of a scientific paper (in preparation) to be published in a special issue dedicated to SoilCare. Crop Husbandry management practices:<br> 1. Crop type & crop rotations, including intercropping, cover crops and perennial crops<br> 2. Nutrient management<br> 3. Irrigation + fertigation<br> 4. (Controlled) Drainage<br> 5. Tillage<br> 6. Pest management<br> 7. Weed management<br> 8. Crop residue management & mulching<br> 9. Mechanization & technology<br> 10. Landscape management Areas of interest:<br> a) Agronomic effects (typically: yield, crop quality)<br> b) Soil quality & soil health<br> c) Resource use efficiency (mainly: water, nutrients)<br> d) Economic aspects<br> e) Environmental impacts (mainly: losses of greenhouse gases, and leaching)<br> Originally we also had 'Human health' as area of interest, but since hardly any information was available on this subject, this was no longer considered.
description: {"references": ["Oenema, O., M. Heinen, R. Rietra, and R. Hessel. 2017. A review of soil-improving cropping systems (full report). SoilCare Scientific Report 07, Deliverable D2.1, SoilCare Project, Wageningen Environmental Research, the Netherlands. Available at: https://soilcare-project.eu/downloads/soilcare-reports-and-deliverables"]}
DOI: 10.17632/r7cppyn3d3.2
title: Data for data-driven decision-making analysis

description: This study describes data on data-driven decision-making that is introduced for the first time in an organization. Data were collected in semi-structured in-depth interviews and emails and are part of the ethnographic research conducted on the base of transportation organization in the North of the UK. This corpus of data was analyzed employing both inductive reasoning and quantitative sentiment analysis. The specificity of data is that interviews and emails played the role of a prolongation of participatory observations and ethnographic research. Data were collected during five months March 2019 – August 2019 pilot project on testing new data technology and introducing data to support decision-making. Five months of data provide an opportunity for micro-temporal dynamics analysis within pilot projects alike.
DOI: 10.17632/s3zt27txfj.1
title: Do Business Records Management affect Business Growth?

description: The implementation of a records management plan is an excellent approach to ensure small and medium-sized enterprises (SMEs) are sustained and continue to expand into huge or multi-national corporations. Maintaining records helps businesses in making better judgments and developing appropriate policies, resulting in enhanced effectiveness and efficiency. This will leverage means for tracking business progress and making appropriate decisions to expand the productive component of the economy. SMEs Business growth will help generate tax revenue for the government while also encouraging poverty reduction through tax transfers
DOI: 10.17632/dfg449h2wt.1
title: Inflammatory potential of gut microbiota from monozygotic twin pair discordant for ulcerative colitis 

description: Gut microbiota perturbations are common in inflammatory bowel disease (IBD), including ulcerative colitis (UC), but it is unclear whether this is a result of the disease or a contributing factor. In twin pairs discordant for IBD, the healthy co-twin is at an increased risk of IBD and has a gut microbiota more similar to IBD patients than healthy individuals. Moreover, appropriate medical treatment may reduce the perturbations. We, therefore, transferred stool from a discordant twin pair, i.e. one healthy and one treated for UC, to germ-free mice by the inoculation of pregnant dams. Dextran sodium sulfate was used to induce colitis in the pups. Offspring of mice inoculated with stool from the UC twin had a lower disease activity index (DAI) and gut inflammation and microbiota with higher alpha diversity and a more anti-inflammatory profile, with the exclusive presence of the anti-inflammatory Akkermansia species, compared to offspring of mice inoculated with stool from the healthy co-twin. These results indicate that the healthy twin had a more inflammatory microbiota than the twin treated for UC. Our study suggests that individuals susceptible to IBD have a more inflammatory gut microbiota. Future studies should assess the potential use of individual gut microbiota inflammatory profiles in personalised medicine.
DOI: 10.17632/tgs5rz874z.1
title: PATIENTS TREATED WITH SUSPECTED STROKE: ANALYSIS OF THE ASSOCIATION BETWEEN DIAGNOSIS AND CLINICAL OUTCOME

description: This is a cross-sectional and observational study, with secondary data and a quantitative approach, carried out on visits to patients with suspected ischemic or hemorrhagic stroke, treated in an emergency department of a high-complexity hospital. The research was carried out in October 2019 at the Hospital do Coração de Natal, a private institution in the city of Natal, State of Rio Grande do Norte, Brazil and comprised the data recorded in electronic medical records from March to August 2019 (period of six months). The hypothesis proposed for the study was that there was an association between the type of stroke diagnosis and its clinical outcomes. The objective of this research was to verify the association between diagnosis and clinical outcomes in suspected cases of stroke, treated in the emergency room of a high complexity hospital. Of the total of 50 consultations, it was observed that among the diagnoses of cerebrovascular accident, the ischemic with 18 cases (36%) and the hemorrhagic with five (10%) stood out, and this represented the highest proportion of deaths, with a total of three (6%). Within the sample, 24 (48%) had no confirmation of stroke, without any occurrence of death (p-value= 0.001). The research showed, in the sample studied, the association between the diagnosis in patients with suspected stroke and its clinical outcome, which had hospital discharge as the main outcome, but with a high percentage of deaths among hospitalizations. In this sense, the hypothesis proposed in the study was accepted.
DOI: 10.17632/yj8gn44vf8.2
title: Google Mobility Index in Indonesia

description: The following data is Google Mobility Index (GMI) data in Indonesia and a visualization of the correlation between GMI data and Covid cases in Indonesia.
DOI: 10.17632/m7twyzc4yj.2
title: Development of a Novel Cell-Cell Transmission Assay for SARS-CoV-2

description: We describe herein a novel SARS-CoV-2 cell-cell transmission assay we developed which provides a very rapid and quantitative readout to assess SARS-CoV-2 Spike-hACE2 interaction in the absence of using pseudotyped particles or live virus. We have established two well-behaved stable cell lines which have demonstrated a remarkable correlation with standard cell-free viral pseudotyping for inhibition by convalescent sera, post-vaccine sera, small molecule drugs, and murine anti-spike monoclonal antibodies. The assay is very rapid, reliable, and highly reproducible, without a requirement for any specialized research reagents or laboratory equipment and should be easy to adapt for use in most investigative and clinical settings. It can be effectively used or modified for high throughput screening for compounds and biologics that interfere with virus-cell binding and entry to complement other neutralization assays currently in use.
DOI: 10.17632/x3v2yhjx7c.1
title: LiDiTE - SPM use case experiment

description: Data gathered during the use case implementation for the LiDiTE framework
DOI: 10.17632/6y3hwsz2zz.2
title: Patient outcome non-immobilized spinal fractures

description: 1. The purpose of this set is to answer the question what are the differences in patient outcomes for non-immobilized spinal fractures after a trauma and delivered by an Emergency Medical Service (EMS) on the Emergency Department (ED) between the pre-period (rigid preventive spinal immobilisation protocol) and the post-period (a Dutch selective preventive spinal immobilisation protocol).   
2. One row is one unique patient. 
3. Data exists mainly categorical variables, age is a continu variable. Language is Dutch.
4. #N/B means 'data is not available'.
5. The data comes from 2 databases: 1) the digital record of the EMS and  2) the electronisch patient record of the ED. These data were merged before analysis
6. The periods 2013-2014 and 2017-2018 means: the data of the years 2013 and 2014 were merged and together they form a unit that represents the pre-period. The same usage for de post-period 2017-2018.
7. The main finding: 1) 125 of 1,147 trauma patients had a fracture, of which 54 fractures were not immobilized. However, between the pre- and post-period in percentages there were no statistical significant differences.
DOI: 10.5517/ccdc.csd.cc24ljfq
title: CCDC 1984013: Experimental Crystal Structure Determination

description: Related Article: U. S. Makhmudov, T. T. Toshmurodov, A. A. Ziyaev|2020|Uzb.Khim.Zh.|3|42|
DOI: 10.5517/ccdc.csd.cc24ljlw
title: CCDC 1984018: Experimental Crystal Structure Determination

description: Related Article: U. S. Makhmudov, T. T. Toshmurodov, A. A. Ziyaev|2020|Uzb.Khim.Zh.|3|42|
DOI: 10.5517/ccdc.csd.cc24ljmx
title: CCDC 1984019: Experimental Crystal Structure Determination

description: Related Article: U. S. Makhmudov, T. T. Toshmurodov, A. A. Ziyaev|2020|Uzb.Khim.Zh.|3|42|
DOI: 10.5517/ccdc.csd.cc24ljpz
title: CCDC 1984021: Experimental Crystal Structure Determination

description: Related Article: U. S. Makhmudov, T. T. Toshmurodov, A. A. Ziyaev|2020|Uzb.Khim.Zh.|3|42|
DOI: 10.5517/ccdc.csd.cc25mv6w
title: CCDC 2015068: Experimental Crystal Structure Determination

description: Related Article: Sakineh Parvarinezhad, Mehdi Salehi, Maciej Kubicki, Ali Khaleghian|2021|Appl.Organomet.Chem.|35|e6443|doi:10.1002/aoc.6443
DOI: 10.5517/ccdc.csd.cc294qqx
title: CCDC 2119709: Experimental Crystal Structure Determination

description: Related Article: Hiroki Ishikawa, Yasushi Yoshida, Takashi Mino, Masami Sakamoto*|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294qt0
title: CCDC 2119712: Experimental Crystal Structure Determination

description: Related Article: Hiroki Ishikawa, Yasushi Yoshida, Takashi Mino, Masami Sakamoto*|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294qv1
title: CCDC 2119713: Experimental Crystal Structure Determination

description: Related Article: Hiroki Ishikawa, Yasushi Yoshida, Takashi Mino, Masami Sakamoto*|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294qy4
title: CCDC 2119716: Experimental Crystal Structure Determination

description: Related Article: Hiroki Ishikawa, Yasushi Yoshida, Takashi Mino, Masami Sakamoto*|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294qz5
title: CCDC 2119717: Experimental Crystal Structure Determination

description: Related Article: Hiroki Ishikawa, Yasushi Yoshida, Takashi Mino, Masami Sakamoto*|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294rhq
title: CCDC 2119733: Experimental Crystal Structure Determination

description: Related Article: Hiroki Ishikawa, Yasushi Yoshida, Takashi Mino, Masami Sakamoto*|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc294v1c
title: CCDC 2119812: Experimental Crystal Structure Determination

description: Related Article: Sarah E. Farmiloe, Izar Capel Berdiell, Malcolm A. Halcrow|2021|CSD Communication|||
DOI: 10.17632/5k6nybdy92.2
title: Brightness Temperature Variances from On-Planet Views in the A1–A3 Channels by the Mars Climate Sounder

description: This dataset contains significant data analysis products related to a manuscript entitled, “A Multiannual Record of Gravity Wave Activity in Mars's Lower Atmosphere from the Mars Climate Sounder,” which was accepted The Planetary Science Journal on 4 February 2022 as:

"Mars Climate Sounder observations of gravity wave activity throughout Mars's lower atmosphere" 

These fall into three broad categories: diagnoses of detrended brightness temperature variance in three channels in individual views in the nadir or off-nadir by Mars Climate Sounder on board Mars Reconnaissance Orbiter; averages and other statistics of those diagnoses in space and time; and estimated gravity wave visibility functions for nadir and off-nadir views. This document presumes the manuscript is available to the dataset user.

See MCS_OP_A13_GW_Analysis_Dataset_Documentation.pdf for more detailed documentation.
DOI: 10.17632/cjcvw3b4dw.2
title: Urbanization accentuates hand use in the foraging activities of primates

description: Objectives: How a species uses its anatomical manipulators is determined by anatomy and physiology at a proximate level and by phylogeny and ecology at an ultimate level. Primates are often distinguished by their prehensile capabilities and manual dexterity. Theoretical explanations for intraspecific variation in the use of mouth and hands by nonhuman animals is non-existent. In the context of intense pressures of urbanization on natural habitats, we examined if hand and mouth use differed across the rural-urban gradient in food retrieval and food processing under experimental conditions and under naturalistic conditions in cercopithecids. 
Results: The use of hands in acquisition and processing food increased with urbanization and the converse was true for mouth use under experimental conditions. Even under naturalistic settings, all examined species of urban primates showed a bias in hand use during food acquisition. 
Discussion: Thus, it appears that the adaptive pressures of urbanization, like the manual constraints of extracting packaged food and perhaps the need for visual-haptic exploration of novel objects accentuates hand use in even simple tasks among synanthropic groups of nonhuman primates. Additional research is needed to determine specific factors of urbanization influencing the trend observed and to ascertain similar patterns in other primates occupying forest-urban niches.
Materials and Methods: We observed acquisition and processing of peanuts under standardized conditions across groups of bonnet monkey (Macaca radiata) differing in their dietary dependence on packed food items. Next, we coded acquisition and processing behaviors in bonnet macaques, Japanese monkey and vervet monkey in a similar habitat gradient.  The supplementary materials (Folder: Supplementary information) presents supplemental figures and supplemental table. The data file for each primate species is included in 'Mined Info-R data files'. These data files have been used for analyses in R. The excel file contains all the data used in the study and data description is provided in the text file titled,'Data usage details'.
DOI: 10.25345/c50p3j
title: MassIVE MSV000088821 - GNPS - Soil isolated Actinomycetes interaction
title: LC-MS/MS untargeted metabolomics of bacterial exo-metabolomes extracted by soil isolated actinomycetes, interacting experiments were realized in solid growth media.