cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4650115.v1
title: <sup>40</sup>Ar/<sup>39</sup>Ar details. Palaeomagnetic and geochronological evidence for a major middle Miocene unconformity in Söke Basin (western Anatolia) and its tectonic implications for the Aegean region

description: Details of <sup>40</sup>Ar/<sup>39</sup>Ar analysis including heating steps.
DOI: 10.6084/m9.figshare.4650064
title: Supplementary Material for: Activin Signaling Disruption in the Cochlea Does Not Influence Hearing in Adult Mice

description: Activin, a member of the TGF-F superfamily, was found to play an important role in the development, repair and apoptosis of different tissues and organs. Accordingly, activin signaling is involved in the development of the cochlea. Activin binds to its receptor ActRII, then dimerizes with ActRI and induces a signaling pathway resulting in gene expression. A study reported a case of fibrodysplasia ossificans progressiva with an unusual mutation in the ActRI gene leading to sensorineural hearing loss. This draws attention to the role of activin and its receptors in the developed cochlea. To date, only the expression of ActRII is known in the adult mammalian cochlea. In this study, we present for the first time the presence of activin A and ActRIB in the adult cochlea. Transgenic mice with postnatal dominant-negative ActRIB expression causing disruption of activin signaling in vivo were used for assessing cochlear morphology and hearing ability through the auditory brainstem response (ABR) threshold. Nonfunctioning ActRIB did not affect the ABR thresholds and did not alter the microscopic anatomy of the cochlea. We conclude, therefore, that activin signaling is not necessary for hearing in adult mice under physiological conditions but may be important during and after damaging events in the inner ear.
DOI: 10.6084/m9.figshare.4650040
title: MSFEarchdata.xlsx

description: The file contents the data to three figures, which are included in the manuscript by J. Machacek, J. Seda: Temperature dependent metabolic costs in <i>Daphnia</i> embryogenesis in the context of temperature-size rule. submitted to Functional Ecology. Details of materials, methods, data analysis and interpretation are presented in the manuscript.<br><br>
DOI: 10.6084/m9.figshare.4649980
title: Data supporting Thompson et al. (2017) Animal Behaviour

description: This data supports the following publication:<br>Faye J. Thompson, Harry H. Marshall, Emma I.K. Vitikainen & Michael A. Cant (2017) Causes and consequences of intergroup conflict in cooperative banded mongooses. <i>Animal Behaviour</i><i><br></i>Please read the "Read Me.txt" file for a full description of the data contained in each data set
DOI: 10.6084/m9.figshare.4650040.v1
title: MSFEarchdata.xlsx

description: The file contents the data to three figures, which are included in the manuscript by J. Machacek, J. Seda: Temperature dependent metabolic costs in <i>Daphnia</i> embryogenesis in the context of temperature-size rule. submitted to Functional Ecology. Details of materials, methods, data analysis and interpretation are presented in the manuscript.<br><br>
DOI: 10.6084/m9.figshare.4650064.v1
title: Supplementary Material for: Activin Signaling Disruption in the Cochlea Does Not Influence Hearing in Adult Mice

description: Activin, a member of the TGF-F superfamily, was found to play an important role in the development, repair and apoptosis of different tissues and organs. Accordingly, activin signaling is involved in the development of the cochlea. Activin binds to its receptor ActRII, then dimerizes with ActRI and induces a signaling pathway resulting in gene expression. A study reported a case of fibrodysplasia ossificans progressiva with an unusual mutation in the ActRI gene leading to sensorineural hearing loss. This draws attention to the role of activin and its receptors in the developed cochlea. To date, only the expression of ActRII is known in the adult mammalian cochlea. In this study, we present for the first time the presence of activin A and ActRIB in the adult cochlea. Transgenic mice with postnatal dominant-negative ActRIB expression causing disruption of activin signaling in vivo were used for assessing cochlear morphology and hearing ability through the auditory brainstem response (ABR) threshold. Nonfunctioning ActRIB did not affect the ABR thresholds and did not alter the microscopic anatomy of the cochlea. We conclude, therefore, that activin signaling is not necessary for hearing in adult mice under physiological conditions but may be important during and after damaging events in the inner ear.
DOI: 10.6084/m9.figshare.4649974
title: Marine-life Data and Analysis Team (MDAT) graphics

description: Figures to support communication and broader understanding of data products developed by the Marine-life Data and Analysis Team (MDAT).
DOI: 10.6084/m9.figshare.4649980.v1
title: Data supporting Thompson et al. (2017) Animal Behaviour

description: This data supports the following publication:<br>Faye J. Thompson, Harry H. Marshall, Emma I.K. Vitikainen & Michael A. Cant (2017) Causes and consequences of intergroup conflict in cooperative banded mongooses. <i>Animal Behaviour</i><i><br></i>Please read the "Read Me.txt" file for a full description of the data contained in each data set
DOI: 10.6084/m9.figshare.4649968
title: Singles Day Forwarding

description: Forwarding data of Marketing topic on A company official microblogging network in Singles Day <br>
DOI: 10.6084/m9.figshare.4649965
title: Protein_Binding_Clozapine_PLOSOne

description: Data for tables and figures for manuscript titled "<i>The Binding Effect of Proteins on Medications and Its Impact on Electrochemical Sensing: Antipsychotic Clozapine as a Case Study</i>"
DOI: 10.6084/m9.figshare.4649965.v1
title: Protein_Binding_Clozapine_PLOSOne

description: Data for tables and figures for manuscript titled "<i>The Binding Effect of Proteins on Medications and Its Impact on Electrochemical Sensing: Antipsychotic Clozapine as a Case Study</i>"
DOI: 10.6084/m9.figshare.4649968.v1
title: Singles Day Forwarding

description: Forwarding data of Marketing topic on A company official microblogging network in Singles Day <br>
DOI: 10.6084/m9.figshare.4649956
title: Microblogging advertising topic

description: Microblogging ad topic response number (comment and forward) data
DOI: 10.6084/m9.figshare.4649956.v1
title: Microblogging advertising topic

description: Microblogging ad topic response number (comment and forward) data
DOI: 10.6084/m9.figshare.4649875
title: Supplementary Material for: The “Golden Age” of Probiotics: A Systematic Review and Meta-Analysis of Randomized and Observational Studies in Preterm Infants

description: <b><i>Background:</i></b> Over the last few years, probiotics have been one of the most studied interventions in neonatal medicine. <b><i>Objectives:</i></b> The aim of this work was to analyse all studies (randomized controlled trials, RCTs, and observational studies) assessing the use of probiotics in very low birth weight (VLBW) preterm infants. <b><i>Search Methods:</i></b> A systematic literature search was conducted using PubMed, Embase, Cochrane Library, and Web of Science. The data from RCTs and observational studies were pooled and analysed separately. <b><i>Selection Criteria:</i></b> RCTs and observational studies that enrolled VLBW infants with enteral administration of probiotics were considered. Extracted study data included probiotic characteristics and at least 1 clinical outcome (necrotizing enterocolitis [NEC], late-onset sepsis or all-cause mortality). <b><i>Data Collection and Analysis:</i></b> Forty-four studies were eligible for our review: 30 RCTs and 14 observational studies. Severe NEC rates (stage II or more) and all-cause mortality were reduced among the probiotic groups in both the RCTs (RR 0.57, 95% CI 0.47-0.70, and RR 0.77, 95% CI 0.65-0.92, respectively) and the observational studies (RR 0.51, 95% CI 0.37-0.70, and RR 0.71, 95% CI 0.62-0.81, respectively). Furthermore, there was a 12% reduction in the risk of sepsis in RCTs and a 19% reduction in observational studies. The meta-analysis of observational studies showed a reduction in the risk of NEC in extremely low birth weight infants. However, this was not statistically significant. <b><i>Conclusions:</i></b> This meta-analysis of RCT and observational studies found that the use of probiotics was beneficial for the prevention of severe NEC, late-onset sepsis, and all-cause mortality in VLBW infants.
DOI: 10.6084/m9.figshare.4649866
title: Supplementary Material for: Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case

description: With each new microarray or RNA-seq experiment, massive quantities of transcriptomic information are generated with the purpose to produce a list of candidate genes for functional analyses. Yet an effective strategy remains elusive to prioritize the genes on these candidate lists. In this review, we outline a prioritizing strategy by taking a step back from the bench and leveraging the rich range of public databases. This in silico approach provides an economical, less biased, and more effective solution. We discuss the publicly available online resources that can be used to answer a range of questions about a gene. Is the gene of interest expressed in the system of interest (using expression databases)? Where else is this gene expressed (using added-value transcriptomic resources)? What pathways and processes is the gene involved in (using enriched gene pathway analysis and mouse knockout databases)? Is this gene correlated with human diseases (using human disease variant databases)? Using mouse fetal testis as an example, our strategies identified 298 genes annotated as expressed in the fetal testis. We cross-referenced these genes to existing microarray data and narrowed the list down to cell-type-specific candidates (35 for Sertoli cells, 11 for Leydig cells, and 25 for germ cells). Our strategies can be customized so that they allow researchers to effectively and confidently prioritize genes for functional analysis.
DOI: 10.6084/m9.figshare.4649866.v1
title: Supplementary Material for: Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case

description: With each new microarray or RNA-seq experiment, massive quantities of transcriptomic information are generated with the purpose to produce a list of candidate genes for functional analyses. Yet an effective strategy remains elusive to prioritize the genes on these candidate lists. In this review, we outline a prioritizing strategy by taking a step back from the bench and leveraging the rich range of public databases. This in silico approach provides an economical, less biased, and more effective solution. We discuss the publicly available online resources that can be used to answer a range of questions about a gene. Is the gene of interest expressed in the system of interest (using expression databases)? Where else is this gene expressed (using added-value transcriptomic resources)? What pathways and processes is the gene involved in (using enriched gene pathway analysis and mouse knockout databases)? Is this gene correlated with human diseases (using human disease variant databases)? Using mouse fetal testis as an example, our strategies identified 298 genes annotated as expressed in the fetal testis. We cross-referenced these genes to existing microarray data and narrowed the list down to cell-type-specific candidates (35 for Sertoli cells, 11 for Leydig cells, and 25 for germ cells). Our strategies can be customized so that they allow researchers to effectively and confidently prioritize genes for functional analysis.
DOI: 10.6084/m9.figshare.4649848
title: Appendix - Ten Lectures on Quantitative Approaches in Cognitive Linguistics

description: This series of lectures provides an overview of the author's work on quantitative applications in cognitive linguistics by discussing a wide range of studies involving corpus-linguistic as well as experimental work. After a discussion of how corpus linguistics, cognitive linguistics, and psycholinguistics relate to each other, the author discusses empirical and statistical studies of a wide variety of phenomena including morphophonology (morphological blends and alliteration effects), corpus-based cognitive semantics, frequency and association at the syntax-lexis interface. The book concludes with chapters exemplifying the role that bottom-up approaches can take, the role of statistical methods more generally, and the role of converging evidence from corpus and experimental data.The lectures for this book were given at the <i>The China International Forum on Cognitive Linguistics</i> in May 2013.
DOI: 10.17045/sthlmuni.4649854.v1
title: Data from: HistMapR: Rapid digitization of historical land-use maps in R

description: <b>Method</b><br>This dataset includes a detailed example for using our method (described in paper linked to below) to digitize historical land-use maps in R.<br><br><b>Maps</b><br>We also release all of the Swedish land-use maps that we digitized for this project. This includes the Economic Map of Sweden (Ekonomiska kartan) over Sweden's 15 southernmost counties (7069 25 km<sup>2</sup> sheets), plus 11 sheets of the District Economic Map (Häradsekonomiska kartan - but see http://bolin.su.se/data/Cousins-2015 for more accurate manual digitization).<br><br>--<br>For more information, please see the readme file. For help or collaboration, please contact alistair.auffret@natgeo.su.se. If you use the data here in your work or research, please cite the publication appropriately.<br>
DOI: 10.6084/m9.figshare.4649848.v1
title: Appendix - Ten Lectures on Quantitative Approaches in Cognitive Linguistics

description: This series of lectures provides an overview of the author's work on quantitative applications in cognitive linguistics by discussing a wide range of studies involving corpus-linguistic as well as experimental work. After a discussion of how corpus linguistics, cognitive linguistics, and psycholinguistics relate to each other, the author discusses empirical and statistical studies of a wide variety of phenomena including morphophonology (morphological blends and alliteration effects), corpus-based cognitive semantics, frequency and association at the syntax-lexis interface. The book concludes with chapters exemplifying the role that bottom-up approaches can take, the role of statistical methods more generally, and the role of converging evidence from corpus and experimental data.The lectures for this book were given at the <i>The China International Forum on Cognitive Linguistics</i> in May 2013.
DOI: 10.6084/m9.figshare.4649830
title: Supplementary Material for: Clinical Relevance of Pleural Effusion in Patients with Pulmonary Embolism

description: <b><i>Background:</i></b> Data regarding pleural effusion due to pulmonary embolism (PE) are limited. <b><i>Objectives:</i></b> The aim of this study was to investigate the clinical characteristics of PE patients with pleural effusion caused by PE. <b><i>Methods:</i></b> Patients with PE were retrospectively analyzed and divided into 2 groups based on computed tomography: a group with pleural effusion due to PE (effusion group) and a group without pleural effusion (control group). Clinical characteristics were compared between the 2 groups. <b><i>Results:</i></b> The study population consisted of the effusion group (<i>n</i> = 127) and the control group (<i>n</i> = 651). Serum C-reactive protein (CRP) level was significantly higher in the effusion group than in the control group. The percentages of high-risk Simplified PE Severity Index (57 vs. 47%, <i>p</i> = 0.008), central PE (84 vs. 73%, <i>p</i> = 0.013), right ventricular dilation (45 vs. 36%, <i>p</i> = 0.053), and pulmonary infarction (40 vs. 8%, <i>p</i> &lt; 0.001) were higher in the effusion group than in the control group. Multivariate analysis demonstrated that pulmonary infarction (odds ratio [OR] 6.20, 95% confidence interval [CI] 3.49-10.91, <i>p</i> &lt; 0.001) and CRP level (OR 1.05, 95% CI 1.101-1.09, <i>p</i> = 0.023) were independent predictors of pleural effusion due to PE. The presence of pleural effusion was not a predictor of short-term outcomes or length of hospital stay. <b><i>Conclusions:</i></b> Patients with more severe PE are likely to have pleural effusion caused by PE. However, pleural effusion was not a proven predictor of short-term outcome or length of hospital stay. Pulmonary infarction and CRP levels were independent risk factors for the development of pleural effusion.
DOI: 10.6084/m9.figshare.4649800
title: Code from: Multitrait successional forest dynamics enable diverse competitive coexistence

description: This repository contains all the code used to produce figures in the paper:Falster, D.S., Brännström, Å., Westoby, M. & Dieckmann, U. (2017) Multitrait successional forest dynamics enable diverse competitive coexistence. Proceedings of the National Academy of Sciences USA: doi: 10.1073/pnas.1610206114<br>also available as a preprint atFalster, D.S., Brännström, Å., Westoby, M. & Dieckmann, U. (2015) Multi-trait eco-evolutionary dynamics explain niche diversity and evolved neutrality in forests. bioRxiv, 014605. doi: 10.1101/014605.The code based was also used to generate results ofFalster, D.S., Brännström, Å., Dieckmann, U. & Westoby, M. (2011) Influence of four major plant traits on average height, leaf-area cover, net primary productivity, and biomass density in single-species forests: a theoretical investigation. Journal of Ecology, 99, 148–164. doi: 10.1111/j.1365-2745.2010.01735.xThe main simulation tool is written in C++ while figures are generated using R. All code is released under the GNU GENERAL PUBLIC LICENSE (a requirement of using the GNU Scientific Library).Please note, this code is supplied so that readers can reproduce the results of the published analysis, if that is desired. But it is not intended for use by others. If you are interested in running this type of analysis, please note that no support is given for use of this code. Instead checkout the plant package for an improved implementation of trait evolution in size- and patch-structured metacommuntiies.This repository contains two zip files:- `multi_trait_succession-c1.1.zip` contains code to fully reproduce figures from the 2017 paper, including running simulations.<br>- `output.zip` contains the simulation results used to generate figures from the 2017 paper.For further information please see the file `README.md`.
DOI: 10.6084/m9.figshare.4649791
title: Supplementary Material for: Androgen Insensitivity Syndrome in a Family of Warmblood Horses Caused by a 25-bp Deletion of the DNA-Binding Domain of the Androgen Receptor Gene

description: Testicular feminization, an earlier term coined for describing a syndrome resulting from failure of masculinization of target organs by androgen secretions during embryo development, has been well documented not only in humans but also in the domestic horse. The pathology, actually referred to as androgen insensitivity syndrome (AIS), has been proposed to follow an X-linked recessive pattern of inheritance in some horse breeds already investigated. Affected individuals are characterized by a female phenotype but with a stallion genotype of 64,XY SRY+ constitution. We identified a Warmblood horse pedigree segregating AIS, where the molecular analyses of the androgen receptor gene in the family provided evidences that a 25-bp deletion of the DNA-binding domain is causative of this equine syndrome.
DOI: 10.6084/m9.figshare.4649791.v1
title: Supplementary Material for: Androgen Insensitivity Syndrome in a Family of Warmblood Horses Caused by a 25-bp Deletion of the DNA-Binding Domain of the Androgen Receptor Gene

description: Testicular feminization, an earlier term coined for describing a syndrome resulting from failure of masculinization of target organs by androgen secretions during embryo development, has been well documented not only in humans but also in the domestic horse. The pathology, actually referred to as androgen insensitivity syndrome (AIS), has been proposed to follow an X-linked recessive pattern of inheritance in some horse breeds already investigated. Affected individuals are characterized by a female phenotype but with a stallion genotype of 64,XY SRY+ constitution. We identified a Warmblood horse pedigree segregating AIS, where the molecular analyses of the androgen receptor gene in the family provided evidences that a 25-bp deletion of the DNA-binding domain is causative of this equine syndrome.
DOI: 10.6084/m9.figshare.4649800.v2
title: Code from: Multitrait successional forest dynamics enable diverse competitive coexistence

description: This repository contains all the code used to produce figures in the paper:Falster, D.S., Brännström, Å., Westoby, M. & Dieckmann, U. (2017) Multitrait successional forest dynamics enable diverse competitive coexistence. Proceedings of the National Academy of Sciences USA: doi: 10.1073/pnas.1610206114<br>also available as a preprint atFalster, D.S., Brännström, Å., Westoby, M. & Dieckmann, U. (2015) Multi-trait eco-evolutionary dynamics explain niche diversity and evolved neutrality in forests. bioRxiv, 014605. doi: 10.1101/014605.The code based was also used to generate results ofFalster, D.S., Brännström, Å., Dieckmann, U. & Westoby, M. (2011) Influence of four major plant traits on average height, leaf-area cover, net primary productivity, and biomass density in single-species forests: a theoretical investigation. Journal of Ecology, 99, 148–164. doi: 10.1111/j.1365-2745.2010.01735.xThe main simulation tool is written in C++ while figures are generated using R. All code is released under the GNU GENERAL PUBLIC LICENSE (a requirement of using the GNU Scientific Library).Please note, this code is supplied so that readers can reproduce the results of the published analysis, if that is desired. But it is not intended for use by others. If you are interested in running this type of analysis, please note that no support is given for use of this code. Instead checkout the plant package for an improved implementation of trait evolution in size- and patch-structured metacommuntiies.This repository contains two zip files:- `multi_trait_succession-c1.1.zip` contains code to fully reproduce figures from the 2017 paper, including running simulations.<br>- `output.zip` contains the simulation results used to generate figures from the 2017 paper.For further information please see the file `README.md`.
DOI: 10.6084/m9.figshare.4649277
title: The Drosophilidae (Diptera) of western Victoria, Australia

description: The Drosophilidae (Diptera) fauna of Australia is largely restricted to rainforests, moist temperate forests, and ecological niches that afford some relief from desiccation stress. Tropical Queensland has 255 described species in 35 genera, subtropical NSW 138 species in 21 genera, temperate Victoria 42 species in 8 genera, cold-temperate Tasmania 21 species in 5 genera, and dry-temperate South Australia 17 species in 4 genera. Western Victoria has 19 species in 5 genera (Table 1); only <i>Drosophila prodispar</i> (in the <i>D. setifemur</i> species group, subgenus <i>Sophophora</i>) is endemic to this region. About half of the species known from western Victoria are drawn to fruit baits (e.g., rotting-banana bait), the remainder, including <i>D. prodispar</i>, may only be collected using a sweep net or Malaise trap (Table 1). Table 2 gives the detailed results of collecting in western Victoria in February 2016. Voucher specimens are held in the Australian Museum, Sydney. <i>Drosophila prodispar</i> remains rare (only 11 specimens are known, all in AMS and ANIC, see Table 3), no further material was collected during the present survey. The author acknowledges the State Government of Victoria, Department of Environment, Land, Water & Planning for permission to collect and the Australian Museum Research Institute, Sydney.