cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dbkhmp
title: Occurrence Download

description: A dataset containing 965 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Notothenia coriiceps Richardson, 1844"
 ]
}

 The dataset includes 965 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044712-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60521/331995
title: Multi-Channel Seismic Shot Data (SEG-D raw field format) from Walvis Ridge and Valdivia Bank, South Atlantic Ocean (TN373, 2019)

description: This data set was acquired with the Scripps Institution of Oceanography portable multi-channel seismic system during a survey of Walvis Ridge and Valdivia Bank in the South Atlantic Ocean, as part of R/V Thomas G. Thompson cruise TN373 in late 2019. The data files presented here are in SEG-D format and contain the raw field multi-channel seismic reflection shot data that has not been processed. The files are served as tar bundles, one tar bundle per seismic line. The purpose of cruise TN373 was to collect mutli-channel seismic reflection, magnetic, gravity, and bathymetric data over portions of Walvis Ridge as part of a site survey for International Ocean Discovery Program Expedition 391 and to study the formation of this hotspot trail. Owing to environmental regulations, however, seismic data were collected on one cruise (TN373) and multibeam echo-sounder data, magnetic data, and other geophysical data were collected on the subsequent cruise, TN374. Cruise TN373 started from Montevideo, Uruguay on 5 November 2019 and crossed the south Atlantic to Walvis Ridge. The Scripps portable seismic system used a 96-channel streamer with 2 small G-I airguns as the source. A short 114 km length seismic practice line was shot across southeastern Rio Grande Rise. After arrival in the Walvis Ridge Guyot Province, 13 seismic lines were run over guyots in three survey areas, totaling 717 km of profiles. At Valdivia Bank, an additional 13 seismic lines were run across this plateau feature, totaling 2,229 km of profiles. Altogether, the total number of seismic shots fired was 120,616 and the total length of profiling was 3015 km. Cruise TN373 was finished on 7 December 2019 after arrival at Walvis Bay, Namibia, where technical and science crew changes were made and the seismic gear was removed from the ship. The data set was acquired as part of the project called Tectonic evolution of the Rio Grande Rise - Walvis Ridge hotspot twins inferred from magnetic anomaly and seismic reflection data. Funding was provided by NSF award OCE18-32197.
DOI: 10.60521/331997
title: Processed Seismic Navigation Data (P1 format) from Walvis Ridge and Valdivia Bank, South Atlantic Ocean (TN373, 2019)

description: This data set was acquired with the Scripps Institution of Oceanography portable multi-channel seismic system during a survey of Walvis Ridge and Valdivia Bank in the South Atlantic Ocean, as part of R/V Thomas G. Thompson cruise TN373 in late 2019. The data files presented here are in U.K.O.O.A. P1/90 format and contain Seismic Navigation data that was processed after acquisition. The purpose of cruise TN373 was to collect mutli-channel seismic reflection, magnetic, gravity, and bathymetric data over portions of Walvis Ridge as part of a site survey for International Ocean Discovery Program Expedition 391 and to study the formation of this hotspot trail. Owing to environmental regulations, however, seismic data were collected on one cruise (TN373) and multibeam echo-sounder data, magnetic data, and other geophysical data were collected on the subsequent cruise, TN374. Cruise TN373 started from Montevideo, Uruguay on 5 November 2019 and crossed the south Atlantic to Walvis Ridge. The Scripps portable seismic system used a 96-channel streamer with 2 small G-I airguns as the source. A short 114 km length seismic practice line was shot across southeastern Rio Grande Rise. After arrival in the Walvis Ridge Guyot Province, 13 seismic lines were run over guyots in three survey areas, totaling 717 km of profiles. At Valdivia Bank, an additional 13 seismic lines were run across this plateau feature, totaling 2,229 km of profiles. Altogether, the total number of seismic shots fired was 120,616 and the total length of profiling was 3015 km. Cruise TN373 was finished on 7 December 2019 after arrival at Walvis Bay, Namibia, where technical and science crew changes were made and the seismic gear was removed from the ship. The data set was acquired as part of the project called Tectonic evolution of the Rio Grande Rise - Walvis Ridge hotspot twins inferred from magnetic anomaly and seismic reflection data. Funding was provided by NSF award OCE18-32197.
DOI: 10.6084/m9.figshare.24886953.v1
title: NYC Serosurvey

description: NP and S antibody titer levels in NYC.
DOI: 10.6084/m9.figshare.24886953
title: NYC Serosurvey

description: NP and S antibody titer levels in NYC.
DOI: 10.15468/dl.v4ye46
title: Occurrence Download

description: A dataset containing 4694962 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The New York Botanical Garden Herbarium (NY)"
 ]
}

 The dataset includes 4694962 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044709-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28075193
title: CNASafe Dataset

description: Dataset describing parameters and performance of circulating DNA on proprietary cartridge CNASafe
DOI: 10.17909/xyhn-3z68
title: HST 17068 UVIS
DOI: 10.15468/dl.6wydng
title: Occurrence Download

description: A dataset containing 3487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anairetes reguloides (Orbigny & Lafresnaye, 1837)"
 ]
}

 The dataset includes 3487 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044713-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gygd5y
title: Occurrence Download

description: A dataset containing 43637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phasianus colchicus Linnaeus, 1758",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Machine Observation, Observation, Occurrence evidence)",
 "Year 2008-2024",
 "Country is United States of America",
 "StateProvince is Montana"
 ]
}

 The dataset includes 43637 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044715-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14538339
title: Jagged arrays in ROOT TTree, Parquet, and Avro

description: This is a synthetic dataset of random numbers in variable-length, nested data structures in three file formats: ROOT TTree, Parquet, and Avro. There are four levels of depth:



jagged0: not nested; just a flat array of numbers

jagged1: an array of lists of numbers

jagged2: an array of lists of lists of numbers

jagged3: an array of lists of lists of lists of numbers


The TBasket sizes of the TTree files and the row group sizes of the Parquet files were made to be identical, so that performances can be meaningfully compared. All of the files are compressed with ZLIB level 9.

This dataset was first used in a performance study at CHEP 2019:



presentation page

published proceedings


But it has since been used in other studies, such as this one at CHEP 2021:



presentation page

published proceedings


and this one at ACAT 2022:



presentation page

preprint (will be published)


It has become a standard performance benchmark.

The scripts that were used to create this synthetic dataset are in this repository directory, PR #19.

Just one file, zlib9-jagged0.avro, had to be excluded to fit in this Zenodo record, but it is the easiest one to reconstruct from the others.
DOI: 10.5281/zenodo.14538340
title: Jagged arrays in ROOT TTree, Parquet, and Avro

description: This is a synthetic dataset of random numbers in variable-length, nested data structures in three file formats: ROOT TTree, Parquet, and Avro. There are four levels of depth:



jagged0: not nested; just a flat array of numbers

jagged1: an array of lists of numbers

jagged2: an array of lists of lists of numbers

jagged3: an array of lists of lists of lists of numbers


The TBasket sizes of the TTree files and the row group sizes of the Parquet files were made to be identical, so that performances can be meaningfully compared. All of the files are compressed with ZLIB level 9.

This dataset was first used in a performance study at CHEP 2019:



presentation page

published proceedings


But it has since been used in other studies, such as this one at CHEP 2021:



presentation page

published proceedings


and this one at ACAT 2022:



presentation page

preprint (will be published)


It has become a standard performance benchmark.

The scripts that were used to create this synthetic dataset are in this repository directory, PR #19.

Just one file, zlib9-jagged0.avro, had to be excluded to fit in this Zenodo record, but it is the easiest one to reconstruct from the others.
DOI: 10.15468/dl.2cm7yg
title: Occurrence Download

description: A dataset containing 50799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Geometry POLYGON((-76.96877 -54.97173,-60.52024 -54.97173,-60.52024 6.59378,-76.96877 6.59378,-82.43481 -2.29576,-76.96877 -54.97173))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Egretta caerulea (Linnaeus, 1758)"
 ]
}

 The dataset includes 50799 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044714-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.advswp
title: Occurrence Download

description: A dataset containing 1776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Peromyscus aztecus (Saussure, 1860)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1776 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023661-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2z6sl5
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perezia pungens (Bonpl.) Less."
 ]
}

 The dataset includes 423 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023662-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w2v3fb
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monarda bradburiana Beck",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 180 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175844-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybbb34
title: Occurrence Download

description: A dataset listing the 67 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pycnogonida"
 ]
}

 The dataset's 67 records were derived from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0182470-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rxf5p
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astyanax argyrimarginatus Garutti, 1999"
 ]
}

 The dataset includes 32 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023663-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tytv3d
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "StateProvince is Puebla",
 "StateProvince is Oaxaca",
 "StateProvince is HIdalgo",
 "StateProvince is Queretaro"
 ]
 },
 "TaxonKey is Pityrogramma trifoliata (L.) R.M.Tryon"
 ]
}

 The dataset includes 30 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186932-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud04kk
title: Occurrence Download

description: A dataset containing 92563 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Hemidactylus frenatus Duméril & Bibron, 1836",
 "TaxonKey is Hemidactylus frenatus Schlegel, 1836",
 "TaxonKey is Rhinella marina (Linnaeus, 1758)",
 "TaxonKey is Gambusia holbrooki Girard, 1859",
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)",
 "TaxonKey is Tilapia mariae Boulenger, 1899"
 ]
}

 The dataset includes 92563 records from 371 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023664-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1es8df
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Begonia hatacoa Buch.-Ham. ex D.Don",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023664-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhs2dn
title: Occurrence Download

description: A dataset containing 5656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Tamarix ramosissima Ledeb."
 ]
}

 The dataset includes 5656 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186937-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gculnr
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiotheretes pernix (Bangs, 1899)"
 ]
}

 The dataset includes 377 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023664-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxctwk
title: Occurrence Download

description: A dataset containing 1380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ZAF",
 "TaxonKey is Cicadellidae"
 ]
}

 The dataset includes 1380 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206170-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyafbx
title: Occurrence Download

description: A dataset containing 1636 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trematodon longicollis Michx."
 ]
}

 The dataset includes 1636 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209785-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xw5xb7
title: Occurrence Download

description: A dataset containing 118545 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Anoplolepis gracilipes (Smith, 1857)",
 "TaxonKey is Apis cerana Fabricius, 1793",
 "TaxonKey is Apis mellifera Linnaeus, 1758",
 "TaxonKey is Locusta migratoria (Linnaeus, 1758)",
 "TaxonKey is Monomorium destructor (Jerdon, 1851)",
 "TaxonKey is Monomorium pharaonis (Linnaeus, 1758)",
 "TaxonKey is Pheidole megacephala (Fabricius, 1793)",
 "TaxonKey is Solenopsis geminata (Fabricius, 1804)",
 "TaxonKey is Tapinoma melanocephalum (Fabricius, 1793)",
 "TaxonKey is Wasmannia auropunctata (Roger, 1863)"
 ]
}

 The dataset includes 118545 records from 572 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023666-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqwffp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philadelphus zelleri S.Y.Hu",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164904-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l04pfv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1970-2019",
 "HasCoordinate is true",
 "TaxonKey is Chamaedorea pringlei S.Watson",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023666-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xrwf8g
title: Occurrence Download

description: A dataset containing 4969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alloteropsis semialata (R.Br.) Hitchc."
 ]
}

 The dataset includes 4969 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151726-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ocssic
title: Occurrence Download

description: A dataset containing 118248 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Candeinidae"
 ]
}

 The dataset includes 118248 records from 1709 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023667-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive143578.20251217.10
title: Clostridioides difficile

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive143579.20241212.9.2
title: Capnocytophaga canimorsus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0131753.10fu
title: SH0131753.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive143579.20251217.10
title: Capnocytophaga canimorsus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0131754.10fu
title: SH0131754.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive143580.20230509.8.1
title: Capnocytophaga canimorsus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive143580.20251217.10
title: Capnocytophaga canimorsus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.