cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7028828
title: WRF-DART/RTTOV input and (processed) output files for GMD-2022-30

description: The <em><strong>Exp-01.tar.gz ~ Exp-14.tar.gz (including true_processed.tar.gz and ctrl_processed.tar.gz) </strong></em>store the processed output files. Untarrring each of them will generate a list of subdirectories named after UTC time, txt files and netcdf files. (1) The subdirectories named after the UTC time. For example, 202008180200 denotes 02:00 UTC 18 August 2020. The subdirectory 202008180200 includes preassim_mean.nc and postassim_mean.nc files, which denote the prior and posterior estimates of cloud and non-cloud variables (and diagnosed variable). Both preassim_mean.nc and postassim_mean.nc include seven variables: CWP denotes the cloud water path (kg m<sup>-2</sup>). CWC denotes the mixing ratio (kg kg<sup>-1</sup>) of cloud hydrometers, including cloud droplet, rain, snow, ice, and graupel. P denotes the pressure (hPa), Re_CLOUD denotes the effective radius of liquid water clouds, QVAPOR denotes the water vapor mixing ratio, T denotes the perturbation potential temperature, U denotes the u-wind component, and V denotes the v-wind component. (2)Txt files which are the quantitative metrics of cloud and precipitation simulation errors. FSS_pre.txt and FSS_pos.txt store the fraction skill score for the prior and posterior estimates of cloud coverage. MAE_pre.txt and MAE_pos.txt store the Mean Absolute Error for the prior and posterior estimates of CWP. rain_TS_pre.txt and rain_TS_pos.txt store the TS scores for the prior and posterior estimates of precipitation. rain_MAE_pre.txt and rain_MAE_pos.txt store the MAE for the prior and posterior estimates of rain rate. (3) Netcdf files including mpe_mpi.nc, rain_pre.nc, and rain_pos.nc. mpe_mpi.nc includes the Mean Profile Error (MPE) for the prior and posterior estimates of non-cloud variables (Q, T, U, and V). rain_pre.nc and rain_pos.nc store the results for the prior and posterior estimates of rain rate (mm h<sup>-1</sup>). The <em><strong>nature_run.tar.gz</strong></em> file contains the WRF output files for the nature run. The <em><strong>model_codes.tar.gz</strong></em> file includes the source code of WRF-ARW (v4.1.1), WPS (v4.1), RTTOV (v12.3), and DART (Manhattan release v9.8.0). The <em><strong>input_file.tar.gz</strong></em> file includes the input namelist files for the WRF/WPS/DART models (tool) for the nature run, control run, and fourteen cycled data assimilation experiments. In addition, the input observation sequence files for the DART tool at each analysis time are provided. The <em><strong>Figure_script.tar.gz</strong></em> file includes the visualization scripts of Figure 1~Figure 16 in the manuscript.
DOI: 10.5281/zenodo.6012450
title: Determination of protein stoichiometries via dual-color colocalization with single molecule localization microscopy

description: This entry contains the datasets for the manuscript titled as listed.
description: This research was supported by the Deutsche Forschungsgemeinschaft (FA 301/15-1 to Ch.F.) as part of Research Unit FOR 5046, project P4.
DOI: 10.6084/m9.figshare.21293808
title: Supplementary Material for: Transitioning Stable Patients with Pulmonary Arterial Hypertension from Parenteral Prostanoids to Oral Selexipag

description: <b><i>Introduction:</i></b> Parenteral prostanoids are the most potent therapies for pulmonary arterial hypertension (PAH) but are associated with complications and lifestyle limitations. Carefully selected stable patients may be considered for a transition from parenteral prostanoids to a more convenient oral regimen. We present our experience transitioning patients on parenteral prostanoids to selexipag on an outpatient basis. <b><i>Methods:</i></b> This was a retrospective cohort study of all group 1 PAH patients on parenteral prostanoids who transitioned to selexipag using a standardized outpatient-based protocol. Hospitalization and routine prognostic data were recorded. <b><i>Results:</i></b> Fourteen patients were followed for a median of 1,240 (1,052–1,528) days; all were functional class (FC) II (<i>n</i> = 9) or III (<i>n</i> = 5). Thirteen patients completed the transition, including 11 who underwent catheterization 376 (321–735) days after discontinuing parenteral therapy. Three patients had unfavorable transitions requiring reinitiation of parenteral treatment. Overall, pulmonary vascular resistance increased (3.3–4.5 WU, <i>p</i> = 0.01), cardiac index fell (4.0–2.8 L/min/m<sup>2</sup>, <i>p</i> = 0.01), N-terminal pro-hormone of brain natriuretic peptide worsened (111–205 pg/dL, <i>p</i> = 0.03), but PAH-related hospitalizations improved (27–8, <i>p</i> = 0.02). Cardiac imaging, FC, and 6-min walk distance (6MWD) were unchanged. Patients who failed were older (64 vs. 56 years old) with shorter 6MWD (274 vs. 392 m) and higher REVEAL 2.0 scores (11 vs. 3). <b><i>Conclusions:</i></b> Transition from parenteral prostanoids to oral selexipag in carefully selected low-risk patients was well-tolerated in many patients, with up to 5 years of follow-up. Overall, the hemodynamic response to transition is unpredictable and close monitoring, particularly in the first year of follow-up, is recommended. Additional evaluation of potential predictors of success is necessary.
DOI: 10.6084/m9.figshare.21294942
title: Supplementary Material for: Age-Related Association between Multimorbidity and Mortality in US Veterans with Incident Chronic Kidney Disease

description: <b><i>Introduction:</i></b> Mortality is an important long-term indicator of the public health impact of chronic kidney disease (CKD). We investigated the role of individual comorbidities and multimorbidity on age-specific mortality risk among US veterans with new-onset CKD. <b><i>Methods:</i></b> The cohort included 892,005 veterans aged ≥18 years with incident CKD stage 3 between January 2004 and April 2018 in the US Veterans Health Administration (VHA) system and followed until death, December 2018, or up to 10 years. Incident CKD was defined as the first-time estimated glomerular filtration rate (eGFR) was &lt;60 mL/min/1.73 m<sup>2</sup> for &gt;3 months. Comorbidities were ascertained using inpatient and outpatient clinical records in the VHA system and Medicare claims. We estimated death rates for any cardiovascular disease (CVD, a composite of 6 CVD conditions) and 15 non-CVD comorbidities, and adjusted risks of death (hazard ratio [HR], 95% confidence interval [CI]) overall and by age group at CKD incidence. <b><i>Results:</i></b> At CKD incidence, the mean age was 72 years, and 97% were male; the mean eGFR was 52 mL/min/1.73 m<sup>2</sup>, and 95% had ≥2 comorbidities (median, 4) in addition to CKD. During a median follow-up of 4.5 years, among the 16 comorbidities, CVD was associated with the highest relative risk of death in younger veterans (HR 1.96 [95% CI: 1.61–2.37] in ages 18–44 years and HR 1.66 [1.63–1.70] in ages 45–64 years). Dementia was associated with the highest relative risk of death among older veterans (HR 1.71 [1.68–1.74] in ages 65–84 years and HR 1.69 [1.65–1.73] in ages 85–100 years). The additive effect of multimorbidity on risk of death was stronger in younger than older veterans. Compared to having 1 or no comorbidity at CKD onset, the risk of death with ≥5 comorbidities was &gt;7-fold higher among veterans aged 18–44 years and &gt;2-fold higher among veterans aged 85–100 years. <b><i>Conclusion:</i></b> The large burden of comorbidities in US veterans with newly identified CKD places them at the risk of premature death. Compared with older veterans, younger veterans with multiple comorbidities, particularly with CVD, at CKD onset are at an even higher relative risk of death.
DOI: 10.13026/cqfy-d860
title: BigIdeasLab_STEP: Heart rate measurements captured by smartwatches for differing skin tones

description: This dataset was collected as part of a study on investigating the sources of
inaccuracy in wearable optical heart rate sensors across a variety of
activities (sitting, deep breathing, walking, and typing). The original study
examined covariates including skin tone, signal lag, and device type. The
dataset includes the heart rate given by the ECG and corresponding heart rate
given by each smartwatch used in the study. Activity, skin tone, and subject
ID are also included. This dataset was recorded in July-August 2019 and
includes 53 participants. The data is completely de-identified and
observations are time-synced.
DOI: 10.17632/2rywbdc3rw.1
title: Repercussions of COVID-19 in hemodialysis patients: a systematic review / Repercusiones del COVID-19 en pacientes en hemodiálisis: una revisión sistemática / Repercussões da COVID-19 em pacientes em hemodiálise: uma revisão sistemática

description: The present study deals with a systematic review (SR) that allows the investigation of a specific topic that aims at a critical analysis and a synthesis of relevance, a broad understanding with a broad understanding for the taking of a critical analysis and a potential analysis in view to make a critical analysis and a scientific potential analysis. SR was performed according to the guidelines of the Preferred Reporting Items for Meta-Analyse and Meta-A-Alyse (PRISMA) checklist.
Objective: To identify the scientific evidence in the literature regarding the repercussions of COVID-19 in patients undergoing hemodialysis treatment.
Research question: what are the repercussions of COVID-19 on patients undergoing hemodialysis treatment?
Literature search: journal portal of the Coordination for the Improvement of Higher Education Personnel (CAPES), through the Federated Academic Community (CAFe) or through direct access to the websites of the U.S. National Library of Medicine (PubMed); Virtual Health Library (BVS); Cochrane Library; Web of Science and Science Direct.
Search strategy: to carry out the search for scientific productions, search strategies were applied using the descriptors according to DeCS and MESH terminology, with the terms: “SARS-CoV-2”, “hemodialysis”. This crossing was carried out together with the keyword “complications”. The crossing between descriptors/search terms was performed using the Boolean operator “AND”.
Evaluation of articles: the evaluation of the risks of bias of the articles included in this systematic review was analyzed using the Downs and Black checklist. For the evaluation of case-control and cohort studies, the Newcastle-Ottawa Case-Control Study Quality Rating Scale and the Newcastle-Otawwa Cohort Study Quality Rating Scale were used.
DOI: 10.17632/t76nm3yfzh.3
title: Multi-omic phenotyping reveals host-microbe responses to bariatric surgery, glycaemic control and obesity

description: Background: Resolution of type-2 diabetes (T2D) is common following bariatric surgery, particularly Roux-en-Y gastric bypass. However, the underlying mechanisms have not been fully elucidated.

Methods: To address this we compare the integrated serum, urine and faecal metabolic profiles of participants with obesity +/- T2D (n=80, T2D=42) with participants who underwent Roux-en-Y gastric bypass or sleeve gastrectomy (pre and 3-months post-surgery; n=27), taking diet into account. We co-model these data with shotgun metagenomic profiles of the gut microbiota to provide a comprehensive atlas of host-gut microbe responses to bariatric surgery, weight-loss and glycaemic control at the systems level.

Results: Here we show that bariatric surgery reverses several disrupted pathways characteristic of T2D. The differential metabolite set representative of bariatric surgery overlaps with both diabetes (19.3% commonality) and body mass index (18.6% commonality). However, the percentage overlap between diabetes and body mass index is minimal (4.0% commonality), consistent with weight-independent mechanisms of T2D resolution. The gut microbiota is more strongly correlated to body mass index than T2D, although we identify some pathways such as amino acid metabolism that correlate with changes to the gut microbiota and which influence glycaemic control.

Conclusion: We identify multi-omic signatures associated with responses to surgery, body mass index, and glycaemic control. Improved understanding of gut microbiota - host co-metabolism may lead to novel therapies for weight-loss or diabetes. However, further experiments are required to provide mechanistic insight into the role of the gut microbiota in host metabolism and establish proof of causality.
DOI: 10.5281/zenodo.6341859
title: Compiled sinking POC flux data collected by particle traps used to evaluate the MSPACMAM

description: A compilation of 22 vertical profiles of sinking particulate organic carbon (POC) fluxes measured with either free-drifting sediment traps (i.e., surface tethered and neutrally buoyant sediment traps) or Marine Snow Catchers. The compiled raw data were processed as follows: (1) all POC flux observations were binned to the model grid and (2) individual POC flux profiles were normalized by their shallowest flux.
DOI: 10.5281/zenodo.6342033
title: Global 1° × 1° map of vertical POC flux profiles simulated by the MSPACMAM

description: Model output data generated by two different configurations of the MSPACMAM: (1) the standard model configuration (so-called <em>std</em> configuration) and (2) the model configuration including large particle fragmentation (so-called <em>frag</em> configuration). The MSPACMAM simulates the climatological annual mean state of sinking particulate organic carbon (POC) fluxes in the contemporary global ocean. Model variables include small particle POC concentration, large particle POC concentration, small particle sinking speed, large particle sinking speed, sinking POC flux, and POC transfer efficiency at 1000 m (so-called \(T_{eff}\)).
DOI: 10.5281/zenodo.6534223
title: Supporting data for "Multipartite entangled states in dipolar quantum simulators"

description: Supporting data for "Multipartite entangled states in dipolar quantum simulators" (https://arxiv.org/abs/2205.03910.), by Tommaso Comparin, Fabio Mezzacapo and Tommaso Roscilde. If you use these data in a scientific work, please cite the corresponding article. This dataset includes tVMC and exact results for the two-dimensional dipolar XX model, on square or triangular (periodic) lattices. These results are directly shown in Figures 1-5 of the main text, with the following organization:<br> - See Fig_collective_spin_dynamics for Fig. 1(b); see Fig_GHZ_fidelity for Fig. 1(d).<br> - See Fig_spin_squeezing for Fig. 2.<br> - See Fig_full_counting_statistics_N20 for Fig. 3.<br> - See Fig_Fisher_information_inequality for Fig. 4.<br> - See Fig_GHZ_fidelity for Fig. 5. We also include the exact-diagonalization results shown in Fig. 7 of the Supplementary Material -- see Fig_tower_of_states.
DOI: 10.5284/1000025
title: Submerged Palaeo-Arun and Solent Rivers: Reconstruction of Prehistoric Landscapes

description: The Submerged Palaeo-Arun and Solent Rivers project was undertaken by the Seafloor Imaging and Processes group at the Department of Earth Science and Engineering, Imperial College London and funded through the Aggregates Levy Sustainability Fund as distributed by English Heritage. The project reconstructed the palaeogeomorphology of the extension of the River Arun on the northern English Channel shelf using high-resolution geophysical imaging sonars and assessed the potential for preservation of prehistoric archaeological resources on relict palaeo-landsurfaces and within valley-fill sedimentary deposits
DOI: 10.6084/m9.figshare.11967765.v1
title: Hyperfluidity of dry grain-crushing dense granular flow

description: The puzzle of the unexpectedly high mobility of large geophysical flows has been reported as solved many times since Albert Heim drew attention to it after a disastrous landslide at Elm, Switzerland.
DOI: 10.6084/m9.figshare.21293784
title: Supplementary Material for: Prognostic Impact of Landiolol in Patients with Acute Heart Failure and Atrial Fibrillation with Rapid Ventricular Rates: A Pilot Observational Study

description: <b><i>Introduction:</i></b> Guidelines recommend ventricular rate control to &lt;130 bpm during atrial fibrillation (AF) in patients with acute decompensated heart failure (ADHF) to avoid aggravating deteriorations in cardiac outputs. We aimed to evaluate the prognostic impact of landiolol in patients with ADHF and AF. <b><i>Methods:</i></b> This observational study included 60 patients who were urgently hospitalized with ADHF and presented with AF and a heart rate (HR) ≥130 bpm at admission. The patients were assigned to the landiolol group (<i>n</i> = 37) or the reference group (<i>n</i> = 23) based on their intravenous landiolol use within 24 h after admission. The primary endpoint was death from any cause. <b><i>Results:</i></b> The groups’ baseline characteristics were similar. A significant HR reduction occurred in the landiolol group at 2 h after admission. Compared with the reference group, the HR was significantly lower (111.6 vs. 97.9 bpm, <i>p</i> = 0.02) and the absolute HR reduction was greater (−32.2 vs. −50.0 bpm, <i>p</i> = 0.006) in the landiolol group at 48 h after admission. The landiolol group’s mortality rate was significantly lower than that in the reference group (log-rank test, <i>p</i> = 0.032). landiolol use within 24 h after admission was independently associated with lower all-cause mortality (adjusted hazard ratio: 0.15, 95% confidence interval: 0.02–0.92). <b><i>Conclusion:</i></b> Patients with ADHF and AF who received landiolol for rate control during the acute phase had better prognoses than those who did not receive landiolol.
DOI: 10.17632/4d78cwxkg2.1
title: PyPLATE - Python module

description: The PyPLATE software draws the mode shapes of a rectangular plate for various vibration modes. PyPLATE software Vers. 1.0 - @ September 2020 @ September 2020 - Dorian Nedelcu* & Gilbert-Rainer Gillich* * “Eftimie Murgu” University of Resita, Romania, Faculty of Engineering and Management, Department of Mechanical Engineering and Management, Traian Vuia square, no.1-4, 320085, Resita. d.nedelcu@uem.ro gr.gillich@uem.ro
DOI: 10.5066/f7z31wrb
title: Snake dermatitis data

description: Snake fungal disease (SFD) is an emerging disease of wild snakes in eastern North America caused by the fungus Ophidiomyces ophiodiicola. The data presented here describe: 1) the types of fungi recovered in culture from the skin of snakes with and without fungal skin infections, 2) the presence or absence of skin lesions in populations of snakes surveyed at several sites in Wisconsin and Minnesota, and 3) the various species of snakes that have been found to harbor O. ophiodiicola.
DOI: 10.17632/4286rg7dps.1
title: High-Speed High-Energy X-ray Imaging of Friction Stir Welding 6061-T6 Aluminum - Mfg Letters 2022

description: This dataset contains the raw files and experimental details for the manuscript "Material Flow Visualization during Friction Stir Welding using High-Speed X-Ray Imaging". This study employs high-speed X-ray imaging to capture the process dynamics during FSW in-situ , using a high-intensity X-ray beam to image a 2 mm x 2 mm area at 20,000 frames per second. The friction stir (FS) tool made of H13 tool steel with threads and 3-flats on the probe was used in an aluminum 6061-T6 workpiece. The process parameters employed result in a fully consolidated weldment without any observable sub-surface voids. The density changes captured by the high-intensity X-ray beam show the formation and filling of cavities in the wake of the tool three times per rotation.
This shared data contains the following files and folders:
1) Cross-sections: Contains traverse and lateral cross-sectional views of frictions stir welded specimen.
2) X-ray stills: Contains 3000 frames of X-ray still images taken during the friction stir weld.
3) Experimental settings file: Information on friction stir tool, welding parameters and imaging parameters.
4) Supplementary video file
The video file was processed using ImageJ software. The 3000 frames were imported as an image sequence using a virtual stacked mode. 
The data was collected on 6/10/22 by Hemant Agiwal, Mohammad Ali Ansari, Daniel Franke, Patrick Faue, and Frank E. Pfefferkorn.
Advanced Photon Source contacts: Samuel J. Clark, Alex Deriy, and Kamel Fezzaa
This research used resources of the Advanced Photon Source, a US Department of Energy (DOE) Office of Science user facility operated for the DOE Office of Science by Argonne National Laboratory under Contract No. DE-AC02-06CH11357. The study was funded through the National Science Foundation (grant 1826104).
Accepted manuscript: Agiwal, Hemant, Mohammad Ali Ansari, Daniel Franke, Patrick Faue, Samuel J. Clark, Kamel Fezzaa, Shiva Rudraraju, Michael Zinn, and Frank E. Pfefferkorn. "Material Flow Visualization during Friction Stir Welding using High-Speed X-Ray Imaging." Manufacturing Letters (2022).
DOI: 10.17632/c5t6gjf6b5.1
title: Design of a mobile application for home monitoring of babies with complex congenital heart disease

description: Introduction: Congenital heart diseases are related to heart defects that develop during pregnancy and are present at birth. Children must regularly attend specialized clinical centers for treatment, which includes medical check-ups, hemodynamic procedures, and surgery. Nevertheless, the success of interventions largely depends on the education of parents and caregivers about the symptoms and warning signs that babies with complex congenital heart disease may present during the period between stages. Likewise, it is necessary for caregivers to have tools to face the barriers of the health system, such as, obstacles or delays in obtaining healthcare services. This facilitates timely health care for patients and avoids fatal outcomes or deterioration in quality of life. Materials and Methods: This document presents a system that provides support to patients with complex congenital heart disease in follow-up by a home monitoring program. The system consists of a mobile application that allows parents/caregivers to monitor physiological variables of the patients (weight, intake, and oximetry). The information registered in the application is sent for real-time evaluation by the medical team. Results: The application provides an effective means for sending data and communicating with the medical control center, in addition to offering educational and informative material. In this way, parents/caregivers get constant help and feedback about their baby's condition. Conclusions: The mobile application could help mitigate the costs of medical care and overcome the limitations of follow-up at home, giving doctors the possibility to see the patient's evolution and give timely recommendations.
DOI: 10.5067/gpm/pr/trmm/slh/3a-month/06
title: GPM PR on TRMM Spectral Latent Heating L3 1 month 0.5 degree x 0.5 degree V06
DOI: 10.5281/zenodo.7035926
title: Wolf pup sex ratios and covariates, Idaho, USA 2008-2018

description: Wolf pup sex ratio data and associated covariates in Idaho USA (2008-2018).
DOI: 10.18739/a2r785q4v
title: Profiles of temperature, salinity, and turbidity from Sermilik Fjord during August 2009

description: Fifty-two temperature, salinity, and turbidity profiles from Sermilik Fjord in Southeast Greenland. The profiles were collected with an RBR conductivity-temperature-depth (CTD) (#18859) during August 2009 from the Arctic Sunrise. The profiles were manually examined and are provided as 1-meter (m) bin averages. The survey was comprised of five cross-fjord sections collected at various locations along the fjord and a section spanning the mouth of the fjord. These data were collected as part of a long-term project to monitor Sermilik Fjord to determine what water masses flow into the fjord; in particular, if warm, Atlantic water from the Irminger Sea is able to penetrate into the fjord. Observations have been collected in the fjord since 2008.