cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30329908
title: Code, Dataset Source, Collected Papers

description: This dataset provides the full collection of code, data, and results to ensure the transparency and reproducibility of our research. It consists of two Jupyter notebooks for helping to automatically screen research articles and benchmark statistics generation; two data worksheets containing the list of screened articles and a list of benchmark datasets and links to find them; and a folder with the complete statistical summaries for each benchmark analyzed in our study.
DOI: 10.6084/m9.figshare.30329908.v1
title: Code, Dataset Source, Collected Papers

description: This dataset provides the full collection of code, data, and results to ensure the transparency and reproducibility of our research. It consists of two Jupyter notebooks for helping to automatically screen research articles and benchmark statistics generation; two data worksheets containing the list of screened articles and a list of benchmark datasets and links to find them; and a folder with the complete statistical summaries for each benchmark analyzed in our study.
DOI: 10.15468/dl.jxt5h3
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cassiope ericoides (Pall.) D.Don"
 ]
}

 The dataset includes 705 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046457-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng978b
title: Occurrence Download

description: A dataset containing 20669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eichhornia crassipes (Mart.) Solms"
 ]
}

 The dataset includes 20669 records from 614 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046458-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14535046
title: Cultivation of Arthrospira platensis (ULC 0444) in varying concentrations of brewery influent wastewater_biochar analysis

description: This dataset presents the results of hydrothermal carbonization (HTC) performed on residual microalgal biomass obtained after anaerobic digestion. The microalgal biomass, grown in 90% brewery wastewater (WW) and processed for pigment extraction, underwent HTC at three different temperatures (180°C, 210°C, and 240°C) to assess its potential for biochar production and liquid phase valorization.

Experimental Details:



Hydrothermal Carbonization (HTC):



Solid-to-liquid ratio: 1.5 g biomass per 32 mL anaerobically digested effluent.

HTC reactors: Small stainless-steel reactors (40 mL capacity) operated in a convection oven (Carbolite AX 30).

Reaction conditions: 180°C, 210°C, and 240°C for 3 hours.

Cooling method: Submerged in cold water post-reaction.



Biochar Recovery:



Separation: Filtration using Whatman filter paper.

Measurement: Dried biochar mass used to calculate yield.




Biochar Characterization:



Thermal Stability:



Evaluated through Thermogravimetric Analysis (TGA).



Elemental Analysis:



C, H, N, S measured using a Flash 2000 Elemental Analyzer.

Samples processed in duplicate for accuracy.



ICP Analysis (ICP-OES; iCap 7000 Series Thermo Scientific, USA):



Biochar digested in concentrated HNO₃ and analyzed via ICP for elemental composition.



FTIR Spectroscopy (Nicolet, USA):



Functional group analysis for potential applications in adsorption and soil amendments.




Liquid Phase Characterization:







Bio-oil extracted from the aqueous phase using ethyl acetate.




Data Analysis:



One-way ANOVA in Microsoft Excel was followed by a post hoc Tukey test to compare group means.


Data processing:FTIR data was smooshed using available code from "https://github.com/cran/signal/blob/master/R/sgolayfilt.R"

The FTIR data were smoothed using the Savitzky-Golay algorithm in RStudio to enhance signal clarity while preserving peak features. The code was already existed in "https://github.com/cran/signal/blob/master/R/sgolayfilt.R"The smoothing process involved the following steps:



The raw FTIR data, consisting of wavenumber and intensity values, were imported into RStudio.

The Savitzky-Golay filter was applied using the sgolayfilt() function from the signal package.

The filter was configured with a polynomial order of 3 and a window size of 201 points, ensuring an odd-length window for accurate filtering.

This method effectively reduced noise while retaining the integrity of spectral features, making the data suitable for further analysis.


Dataset Includes:



Biochar yield and thermal stability data.

Elemental composition results (C, H, N, S, and ICP analysis).

FTIR spectroscopy results for functional group identification.

Wastewater characteristics.


Purpose:The dataset aims to evaluate the potential of HTC as a valorization pathway for residual microalgal biomass, supporting sustainable biochar production and the circular bioeconomy.
DOI: 10.15468/dl.gwyt7v
title: Occurrence Download

description: A dataset containing 435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Human Observation, Occurrence evidence)",
 "TaxonKey is Medicago archiducis-nicolai Širj."
 ]
}

 The dataset includes 435 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046459-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mrcss
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Androsace vitaliana subsp. flosjugorum Kress"
 ]
}

 The dataset includes 87 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046460-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pj2pb7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Two new ant species (Formicidae: Dorylinae, Ponerinae) from New Caledonia"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046462-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14535127
title: Metagenomic Sequencing and Functional Analysis of Arthrospira platensis Cultures Grown in Brewery Wastewater

description: Description:This dataset contains metagenomic sequencing data and annotations derived from Arthrospira platensis cultures grown in 90% brewery wastewater (BWW). Samples were collected at three key time points—day 0 (inoculation), day 2 (maximum microbial activity), and day 10 (stationary growth phase)—and analyzed to explore microbial diversity, functional gene composition, and metabolic pathways under these conditions.

Experimental and Analytical Workflow:





Sample Collection and Sequencing:



Samples shipped on dry ice to Novogene for sequencing.

DNA extracted and fragmented (~350 bp) for library construction and PE150 sequencing.





Bioinformatics Pipeline:



Quality Control: Removal of low-quality reads and host contamination.

Assembly: Performed using MEGAHIT to generate scaftigs for gene prediction.

Gene Prediction and Annotation:



ORFs predicted using MetaGeneMark and redundancy reduced via CD-HIT.

Annotated against functional databases (e.g., KEGG, eggNOG, CAZy, VFDB, CARD).



Taxonomic Profiling:



Species annotation using DIAMOND and the Micro_NR database.

Diversity analysis: PCA, PCoA, NMDS, and heatmaps.







Functional Analysis:



Abundance tables for genes, taxa, and functional categories.

Pathway-level metabolic comparisons using KEGG and other databases.

Resistance gene identification via the CARD database.





Statistical Analysis:



MetaGenomeSeq, LEfSe, and RandomForest models used to detect intergroup differences and key species.




Dataset Includes:



Raw sequencing data (FASTQ files).

Gene and species abundance tables.

Functional annotation results (KEGG pathways, CAZy enzymes, resistance genes).

PCA, PCoA, and heatmaps for diversity and functional analysis.

QC and bioinformatics reports.


Purpose:The dataset aims to uncover microbial community dynamics and functional potential of microalgal cultures in brewery wastewater, supporting research on wastewater valorization, microbial ecology, and bioresource applications.
DOI: 10.15468/dl.atbthx
title: Occurrence Download

description: A dataset containing 2128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acomys cahirinus (É.Geoffroy, 1803)"
 ]
}

 The dataset includes 2128 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046463-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7bb6n
title: Occurrence Download

description: A dataset containing 907 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cassiope hypnoides (L.) D.Don"
 ]
}

 The dataset includes 907 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046464-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14546039
title: Meteorological and Pollutant  Data used in Geophysical Research Letters 2024
DOI: 10.5281/zenodo.14546040
title: Meteorological and Pollutant  Data used in Geophysical Research Letters 2024
DOI: 10.4121/81e5d2b0-bcf6-405e-90e7-6750257de3c1
title: Code for analyzing AquaCrop outputs, underlying the publication: Optimal Sowing Windows under Rainfall Variability in Rainfed Agriculture in West Africa

description: This research aims to identify safe sowing windows for smallholder farmers in West Africa. While existing approaches focus on sowing early in the season after the first rain events, we analyzed crop response to water availability for a wide range of sowing dates, covering the entire rainfall season (May to November). AquaCrop, the FAO crop simulation model was used. The model takes as input weather information (rainfall, evapotranspiration, min, and max temperature, all at a daily scale), soil profile and texture, and management practices (no application of fertilizer, rainfed agriculture, etc.). 9 output files are generated after the simulation with different data but 3 are mainly used for the analysis. The Crop file (Crop.out) contains information about crop phenology and most importantly yield and biomass build-up and water stress levels reducing leaf expansion or inducing stomatal closure. The Run file (Run.out) contains the main summary and aggregated variables (yield, water, runoff, transpiration, etc.) of the simulations. The Prof file (Prof.out) contains the water content in the effective root zone, at the field capacity, and the permanent wilting point. The Python codes to analyze Prof and Run outputs of the AquaCrop simulations are in the file AquaCrop_v6.1_Tahmo_Maize_Water Bal.ipynb. The file AquaCrop_v6.1_Tahmo_Maize_Phenology.ipynb contains the codes to analyze the Crop files. Optimal Window.ipynb combines all the different onset approaches together. ET0_analysis - Tahmo.ipynb contains the codes to analyze the weather data, and dry spells and also plot these variables.
DOI: 10.4121/81e5d2b0-bcf6-405e-90e7-6750257de3c1.v1
title: Code for analyzing AquaCrop outputs, underlying the publication: Optimal Sowing Windows under Rainfall Variability in Rainfed Agriculture in West Africa

description: This research aims to identify safe sowing windows for smallholder farmers in West Africa. While existing approaches focus on sowing early in the season after the first rain events, we analyzed crop response to water availability for a wide range of sowing dates, covering the entire rainfall season (May to November). AquaCrop, the FAO crop simulation model was used. The model takes as input weather information (rainfall, evapotranspiration, min, and max temperature, all at a daily scale), soil profile and texture, and management practices (no application of fertilizer, rainfed agriculture, etc.). 9 output files are generated after the simulation with different data but 3 are mainly used for the analysis. The Crop file (Crop.out) contains information about crop phenology and most importantly yield and biomass build-up and water stress levels reducing leaf expansion or inducing stomatal closure. The Run file (Run.out) contains the main summary and aggregated variables (yield, water, runoff, transpiration, etc.) of the simulations. The Prof file (Prof.out) contains the water content in the effective root zone, at the field capacity, and the permanent wilting point. The Python codes to analyze Prof and Run outputs of the AquaCrop simulations are in the file AquaCrop_v6.1_Tahmo_Maize_Water Bal.ipynb. The file AquaCrop_v6.1_Tahmo_Maize_Phenology.ipynb contains the codes to analyze the Crop files. Optimal Window.ipynb combines all the different onset approaches together. ET0_analysis - Tahmo.ipynb contains the codes to analyze the weather data, and dry spells and also plot these variables.
DOI: 10.15468/dl.ardmf8
title: Occurrence Download

description: A dataset containing 5706 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cassiope mertensiana (Bong.) D.Don"
 ]
}

 The dataset includes 5706 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046466-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyf9j9
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The genus Oedichirus in New Caledonia (Staphylinidae: Paederinae: Pinophilini)"
 ]
}

 The dataset includes 160 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046467-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/f0fd8497-0622-460b-92e2-721001f5aecf
title: Data underlying the VIOLA model for potato stress classification using NDVI

description: This data were generated in the context of the Kennis Basis 38 Program on Data Driven and High Tech - use case on AI on arable and animal farms.The objective of the experiment was to evaluate the effect of various potato stress factors on canopy reflectance.This data have been collected to validate a model trained on a synthetic dataset.The experiment has been conducted for two growing seasons: 2023 and 2024.  The experiment was a factorial combination of 2 cultivars (Frieslander early cultivar and Avenger late cultivar) x 5 treatments. In 2023 we had no replicates whereas in 2024 we had 3 replicates.<br>The treatments applied to this experiment were:* No stress* Nitrogen stress* Poor potato emergence* Phytophtora (only in 2024)* Weeds                                                                                                                     The original experiment was supposed to inclide also a water stress treatment by irrigating all fields except for the water stress treatment, however 2023 and 2024 were two wet years and thus irrigation was not needed, this implies that we have two controls treatments instead of one. We measured reflectance using hyperspectral point sensor (TEC5) and drone. For the drone here we report the average reflectance by plot, date and band, drone images can be made available upon request.
DOI: 10.4121/f0fd8497-0622-460b-92e2-721001f5aecf.v1
title: Data underlying the VIOLA model for potato stress classification using NDVI

description: This data were generated in the context of the Kennis Basis 38 Program on Data Driven and High Tech - use case on AI on arable and animal farms.The objective of the experiment was to evaluate the effect of various potato stress factors on canopy reflectance.This data have been collected to validate a model trained on a synthetic dataset.The experiment has been conducted for two growing seasons: 2023 and 2024.  The experiment was a factorial combination of 2 cultivars (Frieslander early cultivar and Avenger late cultivar) x 5 treatments. In 2023 we had no replicates whereas in 2024 we had 3 replicates.<br>The treatments applied to this experiment were:* No stress* Nitrogen stress* Poor potato emergence* Phytophtora (only in 2024)* Weeds                                                                                                                     The original experiment was supposed to inclide also a water stress treatment by irrigating all fields except for the water stress treatment, however 2023 and 2024 were two wet years and thus irrigation was not needed, this implies that we have two controls treatments instead of one. We measured reflectance using hyperspectral point sensor (TEC5) and drone. For the drone here we report the average reflectance by plot, date and band, drone images can be made available upon request.
DOI: 10.15468/dl.8eehu2
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chlamydomonas reinhardtii P.A.Dang."
 ]
}

 The dataset includes 135 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046469-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8t5ecx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Valvata O.F.Müller, 1773",
 "Country is Japan",
 "Year is 1854,2023",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046471-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6sm9bq
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Three new species of Oxyethira Eaton, 1873 (Trichoptera: Hydroptilidae) from New Caledonia"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046470-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28081448
title: <b>Carbon Emission Trading Policy and Corporate Debt Maturity Structure: Evidence from China</b>

description: 利用 2008—2020 年上市公司的数据构建了双重差分模型，实证发现碳排放交易政策对企业债务期限结构的显著负向影响，并通过了一系列稳健性检验。
DOI: 10.15468/dl.nrkb3w
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cassiope redowskii (Cham. & Schltdl.) G.Don"
 ]
}

 The dataset includes 138 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046472-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.njnx36
title: Occurrence Download

description: A dataset containing 51919517 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is India"
 ]
}

 The dataset includes 51919517 records from 2979 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046436-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.igjwfh
title: Occurrence Download

description: A dataset containing 13750 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Estudios bióticos: Plantas, anfibios, mamíferos, aves y edafofauna epígea (coleópteros y arácnidos), en el complejo de páramo Los Nevados"
 ]
}

 The dataset includes 13750 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023141-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87t3gg
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphyllon fasciculatum (Nutt.) Torr. & A.Gray",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 289 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176405-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmrd6x
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microtus guatemalensis Merriam, 1898"
 ]
}

 The dataset includes 186 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023139-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppgfpf
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lysimachia quadrifolia L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 225 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166285-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8qwo4
title: Occurrence Download

description: A dataset listing the 25825 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lynx lynx (Linnaeus, 1758)"
 ]
}

 The dataset's 25825 records were derived from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023141-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t5t54r
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lysimachia radicans Hook.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166288-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.