cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9gecql
title: Occurrence Download

description: A dataset containing 26032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Phyllitis scolopendrium (L.) Newman",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 26032 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031123-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11307424
title: Source Data for the study of Sen1-dependent transcription termination
DOI: 10.5281/zenodo.11307425
title: Source Data for the study of Sen1-dependent transcription termination
DOI: 10.15468/dl.5gg9t4
title: Occurrence Download

description: A dataset containing 5441 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Geometry POLYGON((-91.49414 -32.51953,-80.24414 -55.37109,-70.04883 -62.40234,-47.72461 -55.72266,-31.9043 -42.53906,-32.7832 4.04297,-47.19727 13.18359,-80.24414 13.53516,-90.79102 -8.26172,-91.49414 -32.51953))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hydrozoa"
 ]
}

 The dataset includes 5441 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148678-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnb7ev
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus funiculosa Corner"
 ]
}

 The dataset includes 93 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007824-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwz9yd
title: Occurrence Download

description: A dataset containing 151501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 151501 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031129-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5hsfr
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaura L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 71 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159917-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t82dqr
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Prionospio paucipinnulata Blake & Kudenov, 1978)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046253-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59x68c
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus gigantifolia Merr."
 ]
}

 The dataset includes 46 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007864-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7xmer
title: Occurrence Download

description: A dataset containing 537 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America"
 ]
 },
 "Year 1990-2018",
 "HasCoordinate is true",
 "TaxonKey is Ruellia nudiflora (Engelm. & A.Gray) Urb.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 537 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031123-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mbh6yv
title: Occurrence Download

description: A dataset containing 1282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nymphaea L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 1282 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159909-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wqkpc
title: Occurrence Download

description: A dataset containing 4598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Balearica regulorum (E.T.Bennett, 1834)"
 ]
}

 The dataset includes 4598 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007885-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqod77
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Papilio daksha Hampson, 1888"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031123-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pavvym
title: Occurrence Download

description: A dataset containing 12525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epilobium L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 12525 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159916-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvu632
title: Occurrence Download

description: A dataset containing 64393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Armenia)",
 "BasisOfRecord is one of (Observation, Human Observation, Material sample, Literature Occurrence, Specimen, Unknown evidence, Machine Observation)",
 "Year is greater than or equal to 2016",
 "Year is less than or equal to 2022",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64393 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046229-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vk55du
title: Occurrence Download

description: A dataset containing 1022 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Haematopus chathamensis E.Hartert, 1927"
 ]
}

 The dataset includes 1022 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007763-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kebyyi
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Cajanus cajan (L.) Huth"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031124-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bc6mw
title: Occurrence Download

description: A dataset containing 3375755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Falco sparverius Linnaeus, 1758",
 "HasCoordinate is True",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2021",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 3375755 records from 264 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010313-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44mmeb
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gladiolus rehmannii Baker"
 ]
}

 The dataset includes 33 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012103-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ft0jvo
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Cajanus cajan (L.) Millsp."
 ]
}

 The dataset includes 217 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031125-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqb3vr
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis proserpens (Lynch, 1979)"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186133-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmpph5
title: Occurrence Download

description: A dataset containing 31589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cortaderia selloana (Schult. & Schult.f.) Asch. & Graebn.",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31589 records from 763 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012252-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqengc
title: Occurrence Download

description: A dataset containing 241 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Festuca coelestis (St.-Yves) V.I.Krecz. & Bobrov"
 ]
}

 The dataset includes 241 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027855-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6axwsq
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron tomentosum (Stokes) Harmaja",
 "Year 1000-2024"
 ]
}

 The dataset includes 225 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027854-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zm4hk
title: Occurrence Download

description: A dataset containing 2535 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atlantoxerus getulus (Linnaeus, 1758)"
 ]
}

 The dataset includes 2535 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035392-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4krrf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((36.655 -1.903128, 36.655 -1.901667, 36.65305 -1.901667, 36.655 -1.903128))",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027856-241126133413365/datasets/export for details.
DOI: 10.15468/dl.yyvc5f
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Salvia discolor Kunth"
 ]
}

 The dataset includes 87 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027857-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14337975
title: IberLit (Lithological map of the Iberian Peninsula for botanical studies)

description: A GIS layer (at 30 arc-second resolution) mapping nine major lithological classes potentially influencing plant distributions across the Iberian Peninsula. It was built using information from lithological maps of continental Spain (IGME, 2006), continental Portugal, Andorra and southern France (http://portal.onegeology.org/; Laxton et al., 2010), and it is provided in ASCII raster format.

 

Citation

Fernández-Mazuecos, M., Glover, B.J. (2024). Climatic and edaphic niche shifts during plant radiation in the Mediterranean biodiversity hotspot. Annals of Botany https://doi.org/10.1093/aob/mcae205.

 

Legend








Code



Lithological class



Dominant materials in the original maps (IGME, 2006; Laxton et al., 2010)





1



Siliceous (igneous)



Granite, phyolite, porphyry, pegmatite, aplite, acid volcanic rocks, granodiorite, dacite





2



Siliceous (metamorphic)



Quartzite, gneiss, slate, schist, phyllite





3



Mafic-intermediate



Basalt, diabase, gabbro, tuff, tephrite, eclogite, andesite, diorite





4



Ultramafic



Amphibolite, lamproite, ophite, serpentinite, metabasite, peridotite, piroxenite





5



Clastic (coarse-grained)



Breccia, conglomerate, gravel, greywacke, sandstone, arkose, sand, turbidite





6



Clastic (fine-grained)



Lutite, silt, clay





7



Calcareous



Limestone, marl, marble, calcarenite, calcareous breccia, calcareous conglomerate





8



Dolomitic



Dolostone





9



Gypsic



Gypsum, gypsiferous marl





10



Water



Water bodies





 

References

IGME (2006). Mapa litoestratigráfico y de permeabilidades de España 1/200.000. Madrid: Instituto Geológico y Minero de España.

Laxton, J., Serrano, J.J., Tellez-Arenas, A. (2010). Geological applications using geospatial standards – an example from OneGeology-Europe and GeoSciML. International Journal of Digital Earth 3: 31–49.
DOI: 10.5281/zenodo.14337976
title: IberLit (Lithological map of the Iberian Peninsula for botanical studies)

description: A GIS layer (at 30 arc-second resolution) mapping nine major lithological classes potentially influencing plant distributions across the Iberian Peninsula. It was built using information from lithological maps of continental Spain (IGME, 2006), continental Portugal, Andorra and southern France (http://portal.onegeology.org/; Laxton et al., 2010), and it is provided in ASCII raster format.

 

Citation

Fernández-Mazuecos, M., Glover, B.J. (2024). Climatic and edaphic niche shifts during plant radiation in the Mediterranean biodiversity hotspot. Annals of Botany https://doi.org/10.1093/aob/mcae205.

 

Legend








Code



Lithological class



Dominant materials in the original maps (IGME, 2006; Laxton et al., 2010)





1



Siliceous (igneous)



Granite, phyolite, porphyry, pegmatite, aplite, acid volcanic rocks, granodiorite, dacite





2



Siliceous (metamorphic)



Quartzite, gneiss, slate, schist, phyllite





3



Mafic-intermediate



Basalt, diabase, gabbro, tuff, tephrite, eclogite, andesite, diorite





4



Ultramafic



Amphibolite, lamproite, ophite, serpentinite, metabasite, peridotite, piroxenite





5



Clastic (coarse-grained)



Breccia, conglomerate, gravel, greywacke, sandstone, arkose, sand, turbidite





6



Clastic (fine-grained)



Lutite, silt, clay





7



Calcareous



Limestone, marl, marble, calcarenite, calcareous breccia, calcareous conglomerate





8



Dolomitic



Dolostone





9



Gypsic



Gypsum, gypsiferous marl





10



Water



Water bodies





 

References

IGME (2006). Mapa litoestratigráfico y de permeabilidades de España 1/200.000. Madrid: Instituto Geológico y Minero de España.

Laxton, J., Serrano, J.J., Tellez-Arenas, A. (2010). Geological applications using geospatial standards – an example from OneGeology-Europe and GeoSciML. International Journal of Digital Earth 3: 31–49.
DOI: 10.15468/dl.gckraz
title: Occurrence Download

description: A dataset containing 318 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Month is one of (July, August, September, June, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ciconia boyciana Swinhoe, 1873"
 ]
}

 The dataset includes 318 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027859-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jnvkd
title: Occurrence Download

description: A dataset containing 2817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycium chinense Mill."
 ]
}

 The dataset includes 2817 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027858-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xdr52
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((36.6525 -1.901253, 36.6525 -1.8975, 36.65083 -1.8975, 36.65083 -1.9, 36.6525 -1.901253))",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027861-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27999080
title: Raw data_Submission ID: 248578315

description: The rise of multidrug-resistant (MDR) strains has been seen as an increasing threat to global public health. Among them, carbapenemases-producing strains, mainly Gram-negative bacteria, are particularly concerning the secretion of β-lactamases that inactivate carbapenem antibiotics, often regarded as the last line of defense against MDR infections. Through a high-throughput screen of the U.S. Food and Drug Administration (FDA)-approved compound library, we identified tavaborole (AN2690), as an ultra-broad-spectrum β-lactamase inhibitor with activity against class A, B, and D β-lactamases. Tavaborole exerts its inhibitory effect by forming a transition-state tetrahedral intermediate with the serine residue of β-lactamases through its boron atom electrophilic center. This interaction blocks the deacylation step crucial for β-lactamase activity, effectively neutralizing the enzyme. Transcriptomics analysis revealed that tavaborole acts not only as a reversible covalent inhibitor of serine β-lactamases but also disrupts normal energy metabolism in <i>Klebsiella pneumoniae </i>(<i>K. pneumoniae</i>) via metabolic reprogramming. Specifically, tavaborole inhibits leucyl-tRNA synthetase activity in <i>K. pneumoniae</i>, simulating amino acid starvation and triggering a stringent response. This leads to a transient increase in guanosine tetraphosphate (ppGpp) levels, redirecting the bacterial energy metabolism from the tricarboxylic acid (TCA) cycle to glycolysis. <i>In vivo</i> studies demonstrated the efficacy of combining tavaborole with meropenem, which successfully rescued mice infected intraperitoneally with KPC-2-positive <i>K. pneumoniae</i>, providing significant protection. This dual-function benzoxaborole compound integrates carbapenemase inhibition with antimicrobial activity, offering a promising strategy to combat carbapenem-resistant <i>Enterobacteriaceae</i> (CRE) pathogens and safeguard the efficacy of our current antibiotic arsenal.
DOI: 10.6084/m9.figshare.27999080.v3
title: Raw data_Submission ID: 248578315

description: The rise of multidrug-resistant (MDR) strains has been seen as an increasing threat to global public health. Among them, carbapenemases-producing strains, mainly Gram-negative bacteria, are particularly concerning the secretion of β-lactamases that inactivate carbapenem antibiotics, often regarded as the last line of defense against MDR infections. Through a high-throughput screen of the U.S. Food and Drug Administration (FDA)-approved compound library, we identified tavaborole (AN2690), as an ultra-broad-spectrum β-lactamase inhibitor with activity against class A, B, and D β-lactamases. Tavaborole exerts its inhibitory effect by forming a transition-state tetrahedral intermediate with the serine residue of β-lactamases through its boron atom electrophilic center. This interaction blocks the deacylation step crucial for β-lactamase activity, effectively neutralizing the enzyme. Transcriptomics analysis revealed that tavaborole acts not only as a reversible covalent inhibitor of serine β-lactamases but also disrupts normal energy metabolism in <i>Klebsiella pneumoniae </i>(<i>K. pneumoniae</i>) via metabolic reprogramming. Specifically, tavaborole inhibits leucyl-tRNA synthetase activity in <i>K. pneumoniae</i>, simulating amino acid starvation and triggering a stringent response. This leads to a transient increase in guanosine tetraphosphate (ppGpp) levels, redirecting the bacterial energy metabolism from the tricarboxylic acid (TCA) cycle to glycolysis. <i>In vivo</i> studies demonstrated the efficacy of combining tavaborole with meropenem, which successfully rescued mice infected intraperitoneally with KPC-2-positive <i>K. pneumoniae</i>, providing significant protection. This dual-function benzoxaborole compound integrates carbapenemase inhibition with antimicrobial activity, offering a promising strategy to combat carbapenem-resistant <i>Enterobacteriaceae</i> (CRE) pathogens and safeguard the efficacy of our current antibiotic arsenal.