cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23826675.v1
title: Parasitoid emergence data

description: Controlling the invasive fruit pest, <i>Drosophila suzukii</i>, relies on a range of complimentary pest management approaches. However, increasing external costs (e.g., labour, exclusion mesh and fuel), are limiting the ability to control the pest via non-chemical means. Extant UK parasitoids could be exploited for the suppression of <i>D. suzukii</i> populations but there is currently a lack of knowledge of the UK species utilizing <i>D. suzukii</i> as a host or their lifecycle requirements. Between 2017 and 2020, we identified parasitoids developing in <i>D. suzukii</i>, in southeast England.Sentinel traps, containing laboratory reared <i>D. suzukii</i> larvae/pupae in fruit, were deployed within the vicinity of commercial crops and semi-natural areas. Six generalist parasitoid species were recovered from <i>D. suzukii</i> sentinel traps. These included two species of larval parasitoids (<i>Leptopilina heterotoma</i> Thomson (Hymenoptera: Figitidae) and <i>Asobara tabida</i> (Nees) (Hymenoptera: Braconidae) and four pupal parasitoids (<i>Pachycrepoideus vindemiae</i> (Rondani) (Hymenoptera: Pteromalidae), <i>Spalangia erythromera</i> (Forster) (Hymenoptera: Pteromalidae), <i>Trichopria modesta</i> (Ratzeburg, 1848) and <i>T. prema</i> Nixon (both Hymenoptera: Diapriidae)).The performance of the first four species as <i>D. suzukii</i> parasitoids was further tested in the laboratory and then in the field to assess rates of parasitism. <i>Pachycrepoideus vindemiae</i> was the most abundant species recovered from field collections and had in increasing rate of population rate in the laboratory. Other species were not successful at parasitising <i>D. suzukii</i>. In the field, adult <i>D. suzukii</i> emergence from sentinel traps was reduced by ~21% where parasitoids could access <i>D. suzukii</i><i> </i>larvae and pupae.Parasitoids of <i>D. suzukii</i> are understudied in the UK and this research indicates where future efforts could be made in understanding the interaction between host and, parasitoid and the opportunities to exploit extant parasitoids for the control of <i>D. suzukii</i>. We also evaluate the prospects for classical and augmented control and discuss how they may fit with current regional integrated pest management options.
DOI: 10.5281/zenodo.8119918
title: Data set for "Neural mechanisms underlying uninstructed orofacial movements during reward-based learning tasks"

description: Data set for Li, Nakano, et al. (2023) Neural mechanisms underlying uninstructed orofacial movements during reward-based learning behaviors. Current Biology, https://doi.org/10.1016/j.cub.2023.07.013 <br> The file "Li_Nakano_et_al_detaset.zip" (~45.4 GB) is a compressed version of the "Li_Nakano_et_al_detaset" folder. The uncompressed folder (~76.4 GB) houses the data and some analytical codes used in the study. Upon extraction, the folder reveals two subfolders, "Raw data" and "Source data," and a 'README' text file providing further instructions or information.
DOI: 10.5281/zenodo.8119917
title: Data set for "Neural mechanisms underlying uninstructed orofacial movements during reward-based learning tasks"

description: Data set for Li, Nakano, et al. (2023) Neural mechanisms underlying uninstructed orofacial movements during reward-based learning behaviors. Current Biology, https://doi.org/10.1016/j.cub.2023.07.013 <br> The file "Li_Nakano_et_al_detaset.zip" (~45.4 GB) is a compressed version of the "Li_Nakano_et_al_detaset" folder. The uncompressed folder (~76.4 GB) houses the data and some analytical codes used in the study. Upon extraction, the folder reveals two subfolders, "Raw data" and "Source data," and a 'README' text file providing further instructions or information.
DOI: 10.6084/m9.figshare.23826795
title: Source data

description: Source data
DOI: 10.6084/m9.figshare.23826795.v1
title: Source data

description: Source data
DOI: 10.6084/m9.figshare.21555165.v1
title: MAG annotations cat fecal microbiome BMC Data Note

description: List of the MAGs obtained from cat fecal microbiomes using Hi-C proximity ligation (Phase Genomics). This spreadsheet includes their taxonomy, NCBI accession, and levels of completeness and contamination. This is part of a dataset that was submitted to BMC Research Notes as a Data Note. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from NCBI.
DOI: 10.6084/m9.figshare.21440850
title: AMR Gene Classes

description: Location source (plasmid or genome) of the AMR (antimicrobial resistance) alleles detected in cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, assembled contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21440850.v2
title: AMR Gene Classes

description: Location source (plasmid or genome) of the AMR (antimicrobial resistance) alleles detected in cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, assembled contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21440850.v1
title: AMR Allele Mapping BMC Data Note

description: Location source (plasmid or genome) of the AMR (antimicrobial resistance) alleles detected in cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet is part of a dataset that was submitted to BMC Research Notes as a Data Note. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from NCBI.
DOI: 10.6084/m9.figshare.21440802
title: Putative Proteins of AMR Genes

description: List of the AMR (antimicrobial resistance) genes and their putative proteins which were detected in cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21440802.v2
title: Putative Proteins of AMR Genes

description: List of the AMR (antimicrobial resistance) genes and their putative proteins which were detected in cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet is part of a dataset that was submitted to Microbiology Resource Announcements. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from the NCBI SRA and GenBank.
DOI: 10.6084/m9.figshare.21440802.v1
title: AMR Allele Annotations BMC Data Note

description: List of the AMR (antimicrobial resistance) alleles detected in cat fecal microbiomes using Hi-C proximity ligation in combination with shotgun sequencing. This spreadsheet is part of a dataset that was submitted to BMC Research Notes as a Data Note. The genomic data (Hi-C sequences, metagenome assembly contigs, and MAGs) is also part of this dataset and is available from NCBI.
DOI: 10.25952/55s9-sn86
title: Warming with Temperature Oscillations Alter the Thermal Responses of Two Aphid Species, Acyrthosiphon pisum and Megoura crassicauda, and Parasitoid, Aphidius ervi

description: <p>Organisms naturally experience diurnal temperature fluctuations and variable extreme environmental events rather than only staticthermal regimes. Therefore, experimental studies that use only static mean daily, monthly or yearly temperatures overlook the possible influence of diurnal temperature fluctuations. Exposure to fluctuating temperatures enables an organism to perform more 'naturally' as they have a period of recovery, whereas under constant temperature, they do not have thermal recovery periods. By applying both fluctuating and constant temperatures, this study compares the impacts of elevated temperature on the fitness and demographic parameters of the aphids Acyrthosiphon pisum and Megoura crassicauda Mordvilko. We use four fluctuating temperature regimes that are increased by +0 °C, +2 °C, +4 °C and +5 °C from field-recorded, fluctuating base temperatures and four constant temperatures of 19 °C, 21 °C, 23 °C and 24 °C as treatments and also use a control temperature of 25 °C. We find that A. pisum and M. crassicauda exhibited faster development, quicker generation time (GT), lower population doubling time (DT), increased intrinsic rate of increase (rm) and a finite rate (λ) under warming conditions. In contrast, adult longevity, survival period, fecundity, net reproductive rate (R0), age-specific survivorship (lx) and age-specific fecundity (mx) were negatively affected by warming. The fluctuating thermal regimes improved overall fitness and all demographic parameters of both aphid species; therefore, we identify that daily fluctuating temperatures play a vital role in monitoring and predicting natural population dynamics. These results have implications for the experimental forecasting of natural population dynamics under climate change and global warming predictions.</p>

<p>Data for the Development and survival of juvenile aphids were observed every day at the nine temperature treatments by detecting their moulting and mortality. Moulting was identified by the occurrence of cast skins of the first to four instars. The number of days after birth to death, moulting of each instar, survival, adult longevity, and birth of first nymphs were recorded every 24 hours.</p>

<p>Thesis dataset summaries<br>Chapter 2<br>
<ul><li>Life table data of Pea aphid</li>
<li>Life table data of Megoura</li></ul></p>

<p>Chapter 3<ul><li>
Ctmax </li>
<li>Merabolism</li></ul></p>

<p>Chapter 4<ul><li>
Pea aphid</li>
<li>Parasitoids</li></ul></p>
description: Please contact rune@une.edu.au if you require access to this thesis for the purpose of research or study.
DOI: 10.6084/m9.figshare.23826834
title: Linear Regression model

description: imt of femoral artery
DOI: 10.5519/qd.q2mcf4cz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (376 records)
DOI: 10.17632/v8yy56w3m2.1
title: The thermal conductivity properties of porous materials based on TPMS Schwarz P

description: The results of CAE modeling of thermal conductivity properties of porous materials based on TPMS Schwarz P are presented. The data can be used for creating materials with pre-defined thermal conductivity characteristics. The parameter "a" represents the size of the cube in which one elementary cell is inscribed. The wall thickness characterizes the thickness of the solid layer limited by symmetrical equidistant surfaces from the original TPMS. The results are presented for porous materials with air inside the inter-pore space as well as for the structure in a vacuum (without considering air in the inter-pore space).
DOI: 10.17632/znh6r79yv6.1
title: Benthic Megafaunal Assemblages on Scallop Fishing Grounds in the Bay of Fundy (1997 and 2007)

description: The annual summer scallop surveys on the principal grounds in the Bay of Fundy follow stratified-random designs. The gear comprises a ‘Digby scallop drag’ with four ‘buckets’, each of 760 mm inside width, their bags being made of 74 mm steel-wire rings linked by rubber washers. A comparative data set of three scallop grounds (Digby, Lurcher Shoal and Grand Manan) was produced comprised of 190 stations sampled in 1997 and 213 from 2007–08. Presence/absence of a common suite of 68 benthic invertebrate taxa were recorded: 43 individual species, 20 additional genera and five higher taxa, all drawn from nine phyla. Each taxon was coded for each of seven biological traits (each with associated modalities), selected for their assumed relevance to environmental drivers. A score between 0 and 3 was assigned based on the literature for the taxon’s affinity to each modality, using ‘fuzzy coding’. Non-zero scores were assigned to as many modalities as required to represent the traits of the taxon’s adult stage. The resulting taxa x traits matrix, of 68 taxa by 27 modalities, is provided here along with the metadata for each station sampled. In addition, fourteen environmental variables, deemed relevant to benthic epifauna and representing both seabed sediments and the water column, were quantified for each survey station. Seabed depth, mean grain size, mean significant wave height, mean seabed shear stress, root mean square tidal current speed 1 m above the seabed and combined averaged wave-current shear velocity were each extracted from a sediment transport model for the Bay of Fundy prepared by Li et al. (2015). Mean values for current velocities, salinity and temperature for both surface and bottom layers, plus maximum mixed layer depth and bottom shear were each drawn from the Bedford Institute of Oceanography North Atlantic Model (BNAM: Wang et al., 2018). BNAM values averaged across 1990–2015 were used when examining faunal differences among survey areas, but explorations of temporal change used annual values for 1997 and 2007 individually. The variable nomenclature in the attached spreadsheet follows those of Li et al. (2015) and Wang et al. (2018). Results of the spatial and temporal analyses of these data are found in Staniforth et al. (2023). The values for each of the environmental variables are provided in the spreadsheet below. Their interpolated surfaces are also provided.
DOI: 10.17632/hktr65bp95.1
title: Determinants of Meditation Practice

description: Data associated with the manuscript Hunt, C. A., Hoffman, M. A., Mohr, J. J., & Williams, A. L. (2020). Assessing perceived barriers to meditation: The determinants of meditation practice inventory-revised (DMPI-R). Mindfulness, 11, 1139-1149. The full sample (621 cases) is included.
DOI: 10.17632/znh6r79yv6.2
title: Benthic Megafaunal Assemblages on Scallop Fishing Grounds in the Bay of Fundy (1997 and 2007)

description: The annual summer scallop surveys on the principal grounds in the Bay of Fundy follow stratified-random designs. The gear comprises a ‘Digby scallop drag’ with four ‘buckets’, each of 760 mm inside width, their bags being made of 74 mm steel-wire rings linked by rubber washers. A comparative data set of three scallop grounds (Digby, Lurcher Shoal and Grand Manan) was produced comprised of 190 stations sampled in 1997 and 213 from 2007–08. Presence/absence of a common suite of 68 benthic invertebrate taxa were recorded: 43 individual species, 20 additional genera and five higher taxa, all drawn from nine phyla. Each taxon was coded for each of seven biological traits (each with associated modalities), selected for their assumed relevance to environmental drivers. A score between 0 and 3 was assigned based on the literature for the taxon’s affinity to each modality, using ‘fuzzy coding’. Non-zero scores were assigned to as many modalities as required to represent the traits of the taxon’s adult stage. The resulting taxa x traits matrix, of 68 taxa by 27 modalities, is provided here along with the metadata for each station sampled. In addition, fourteen environmental variables, deemed relevant to benthic epifauna and representing both seabed sediments and the water column, were quantified for each survey station. Seabed depth, mean grain size, mean significant wave height, mean seabed shear stress, root mean square tidal current speed 1 m above the seabed and combined averaged wave-current shear velocity were each extracted from a sediment transport model for the Bay of Fundy prepared by Li et al. (2015). Mean values for current velocities, salinity and temperature for both surface and bottom layers, plus maximum mixed layer depth and bottom shear were each drawn from the Bedford Institute of Oceanography North Atlantic Model (BNAM: Wang et al., 2018). BNAM values averaged across 1990–2015 were used when examining faunal differences among survey areas, but explorations of temporal change used annual values for 1997 and 2007 individually. The variable nomenclature in the attached spreadsheet follows those of Li et al. (2015) and Wang et al. (2018). Results of the spatial and temporal analyses of these data are found in Staniforth et al. (2023). The values for each of the environmental variables are provided in the spreadsheet below. Their interpolated surfaces are also provided.
DOI: 10.17632/ds2n9xwkh9.1
title: NITIRSOIL: a model for site-specific nitrogen management of Mediterranean vegetable crops. The batch mode version and associated database used in the validation

description: The datasets for running the NITIRSOIL model in the batch mode are arranged in the MS Access® database “nitirsoil_batch.mdb”. 
This database was used to run the model in the batch mode with input data for the 107 simulations that made up the NITIRSOIL model validation. The database has seven tables to store the model parameters: “parameters_gener”, “parameters_desni”, “annual_crops_growth”, “tree_crops_growth”, “Kvol_ferti”, “Manure”, “Fertilizer”; other seven tables to store the model input data: “input_table_main”, “Batch_crop_irrigat”, “batch_crops_N”, “water_nitrate”, “soil_gen”, “soil_parameters”, “climate_year_month”, and two tables to store the output data: “output_table_Wbal” and “output_table_Nbal”. An additional “output_N_balance query” was included in the database to summarize the data of each simulation with the main terms of the nitrogen balance for the crop duration in a way that can be easily copied and pasted in the table “Validation_NITIRSOIL_batch.xls” to ease comparison of simulated and observed data for the validation.
In the table “Validation_nitirsoil_batch.xls” the observed data used in the NITIRSOIL validation were included. The data from 107 experimental treatments of 35 experimental fields and 11 vegetables crops (artichoke, onion, potato, carrot, spinach, leek, cauliflower, Chinese cabbage, red cabbage, lettuce, romanesco broccoli) were organized in this table to allow the comparison with the simulated model output. All the experiments for the model validation were carried out in several locations of the Valencian Community (Spain).
The batch version of the model “NITIRSOIL_BATCH” was also included to perform all the simulations of the validation.
DOI: 10.17632/nbprtsrt5f.1
title: Associations between minority stress, perceived social support and depression in people of single and dual minority status

description: The cross-sectional online study was performed in Poland among 509 sexual and gender minority (SGM) people, with an average age of 22 years (M = 22.39, SD = 4.78). Minority stress was assessed using the Daily Heterosexist Experiences Questionnaire (DHEQ), perceived social support was measured by the Multidimensional Scale of Perceived Social Support (MSPSS), and depression symptoms were evaluated using the Center for Epidemiologic Studies Depression Scale – Revised (CESD-R).
DOI: 10.17632/kpx5pbwkvz.1
title: The link between Fullerton Fitness Test and psychological well being in older adults

description: Physical fitness and functioning are related to better mental health in older age. However, which fitness components (body composition, strength, flexibility, coordination, and endurance) are more closely related to psychological well-being (PWB) is unclear. This research examined how body mass index (BMI) and six indices of functional fitness (i.e., lower and upper body strength, lower and upper body flexibility, coordination [based on agility and balance], and aerobic endurance) relate to five psychological measures that could mirror PWB (i.e., resilience, mental well-being, optimism, life satisfaction, and happiness). Thirty-nine older adults (60-94 years; two-thirds female) were examined with the Fullerton Functional Fitness Test (FFFT) after completing five psychometric instruments. Data were analyzed with ordinary least squares regression and then with elastic net regression, calculating the Lindeman, Merenda, and Gold (LMG) indices of the relative importance of the six FFFT components separately for the five psychological measures. Results revealed that BMI, upper body strength, and upper body flexibility were the least significant predictors of PWB. In contrast, lower body flexibility emerged as the most significant predictor, while endurance and, to a lesser extent, coordination were also predictors in some of the PWB measures. These findings should stimulate research on the mechanism connecting lower body flexibility with PWB. Further, apart from their novelty, the findings could be valuable in designing physical fitness programs targeting mental and physical health for older people.
DOI: 10.17632/2fr2zkmr28.1
title: Celerodendrum Solendens (Glory Blossom): Activate a Regulatory Effect on Lipid Peroxidation in  Cerebral Tissue of Aluminum Induced Alzheimer Disease in Adult Male Wister Rat, An Invivo study model.

description: This work is serve as a lunching pad into the use of plant as a medicaments in Alzheimer Disease
DOI: 10.17632/6msmhr9vrs.1
title: Inflammasome-mediated glucose limitation induces antibiotic tolerance in Staphylococcus aureus 

description: Interactions with the host immune system alters S. aureus response to therapeutic antibiotics. We find that S. aureus α-toxin, a pore-forming toxin, interacts with macrophages to alter the microenvironment of the pathogen and influence its susceptibility to antibiotics. α-toxin-mediated activation of the NLRP3 inflammasome induces antibiotic tolerance through increased glycolysis in the host cells, resulting in glucose limitation and ATP depletion in S. aureus. Additionally, inhibition of NLRP3 activation improves antibiotic efficacy in vitro and in vivo. Our findings identify interactions between S. aureus and the host that result in metabolic crosstalk that can determine the outcome of antimicrobial therapy. This data contains GraphPad Prism files containing data from the main and supplemental figures of J.E.Beam. et al., 2023.
DOI: 10.17632/6msmhr9vrs.2
title: Inflammasome-mediated glucose limitation induces antibiotic tolerance in Staphylococcus aureus 

description: Interactions with the host immune system alters S. aureus response to therapeutic antibiotics. We find that S. aureus α-toxin, a pore-forming toxin, interacts with macrophages to alter the microenvironment of the pathogen and influence its susceptibility to antibiotics. α-toxin-mediated activation of the NLRP3 inflammasome induces antibiotic tolerance through increased glycolysis in the host cells, resulting in glucose limitation and ATP depletion in S. aureus. Additionally, inhibition of NLRP3 activation improves antibiotic efficacy in vitro and in vivo. Our findings identify interactions between S. aureus and the host that result in metabolic crosstalk that can determine the outcome of antimicrobial therapy. This data contains GraphPad Prism files containing data from the main and supplemental figures of J.E.Beam. et al., 2023.