cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0103790.10fu
title: SH0103790.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive112096.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112097.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103791.10fu
title: SH0103791.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive112097.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103792.10fu
title: SH0103792.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.gzqtt6
title: Occurrence Download

description: A dataset containing 526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is International Barcode of Life project (iBOL)",
 "Geometry POLYGON((-123.1477 49.2996,-123.1806 49.26981,-123.12266 49.25764,-123.09025 49.27558,-123.1477 49.2996))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2022-2022"
 ]
}

 The dataset includes 526 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077727-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive112098.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112098.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112099.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112099.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103793.10fu
title: SH0103793.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive112100.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112100.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112101.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112101.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112102.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112102.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.f9meun
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Armeria colorata Pau"
 ]
}

 The dataset includes 88 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019754-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfuv6i
title: Occurrence Download

description: A dataset listing the 391 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "StateProvince is SaO PAULO",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 391 records were derived from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lwnpkj
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Unonopsis aviceps Maas"
 ]
}

 The dataset includes 119 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019754-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25029554
title: Ecomorphotype R code and input files

description: Code and input files for the paper: A quantitative test of the “Ecomorphotype Hypothesis” for fossil true seals (Family Phocidae)Acronyms in files (from Churchill & Uhen, 2019):DDDC: diameter of diaphysis at deltopectoral crest<br>HHH: height of head of humerus<br>HTL: height of capitulum<br>HTS: height of trochlea<br>LDC: length of deltopectoral crest<br>TLH: total length of humerus<br>WDC: width of deltopectoral crest<br>WDEH: maximum width of distal epiphysis<br>WDH: minimum width of diaphysis<br>WHH: width of humeral head<br>WPDH: width of proximal epiphysis head to deltopectoral crest<br>WPEH: width of proximal epiphysis head to lesser tubercle<br>WTA: width of trochlea in anterior view<br>WTD: width of trochlea and capitulum in posterior view<br>GAP: distance between head of humerus and deltopectoral crest<br>PIT: depth of coronoid fossa<br>DCF: distance between condyles<br>DN: diameter of the neck of the femur<br>HHF: height of the head of the femur<br>HPS: height of the patellar surface<br>ITW: intertrochlear width of the femur<br>LGTF: length of the greater trochanter<br>LLF: length of the lateral side of the femur<br>MLF: length of the femur on the medial side<br>LMCF: length of the medial condyle<br>LLCF: length of the lateral condyle<br>WCF: width across condyles<br>WDEF: maximum width of distal diaphysis<br>WDF: minimum width of diaphysis<br>WPEF: maximum width of proximal diaphysis<br>WLCF: width of lateral condyle<br>WMCF: width of medial condyle<br>_S: scaled measurementChurchill M, Uhen MD. 2019. Taxonomic implications of morphometric analysis of earless seal limb bones. Acta Palaeontologica Polonica 64(2).
DOI: 10.15468/dl.7aka26
title: Occurrence Download

description: A dataset containing 84044 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Geometry POLYGON((-99.28585 18.9418,-98.96244 18.94627,-98.96587 18.99639,-98.97549 19.08566,-98.97686 19.12067,-98.99403 19.13818,-99.27761 19.13406,-99.28585 18.9418))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 1970-2021"
 ]
}

 The dataset includes 84044 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003073-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfua42
title: Occurrence Download

description: A dataset containing 767 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Scirpus atrovirens Willd."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 767 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019755-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zw5ccn
title: Occurrence Download

description: A dataset containing 12676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Megascops trichopsis (Wagler, 1832)",
 "HasCoordinate is True",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2021",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 12676 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005489-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pyeo6i
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Armeria colorata Pau"
 ]
}

 The dataset includes 88 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019755-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv43sc
title: Occurrence Download

description: A dataset containing 175060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Year is 2011",
 "Country is Brazil"
 ]
}

 The dataset includes 175060 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178607-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azg62i
title: Occurrence Download

description: A dataset containing 3442 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Stilbaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3442 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019755-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb59ay
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Cervus nippon Temminck, 1838"
 ]
}

 The dataset includes 84 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178602-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f1vikn
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynomys mexicanus Merriam, 1892"
 ]
}

 The dataset includes 414 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019756-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkfb7v
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Athene superciliaris (Vieillot, 1817)",
 "HasCoordinate is True",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2021",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 741 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005491-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jffspq
title: Occurrence Download

description: A dataset containing 2606 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Schlegeliaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2606 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019758-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkgmhj
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "TaxonKey is Galba dalli (F.C.Baker, 1907)"
 ]
}

 The dataset includes 49 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0191691-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtk7vz
title: Occurrence Download

description: A dataset containing 317424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TypeStatus is not null",
 "PublishingCountry is Germany"
 ]
}

 The dataset includes 317424 records from 3466 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019759-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znyf6j
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gynaikothrips ficorum (Marchal, 1908)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 193 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019167-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mm8far
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is EW",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 196 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019168-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qa9xh
title: Occurrence Download

description: A dataset containing 76934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (Papua New Guinea, Australia, Indonesia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Paradisaeidae"
 ]
}

 The dataset includes 76934 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019146-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.73hawt
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sorbus maderensis Decne."
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019169-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wx563n
title: Occurrence Download

description: A dataset containing 2840 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Arabis caucasica Willd."
 ]
}

 The dataset includes 2840 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019170-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f7qdgp
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Botaurus pinnatus (Wagler, 1829))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 4500",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 272 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019171-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15058297
title: Uniform Maximum Projection Designs

description: Maximum Projection Designs (MaxPro) and Uniform Maximum Projection Designs (uMaxPro) constructed via combinatorial optimization using simulated annealing (https://doi.org/10.5281/zenodo.15036025).

The MaxPro designs are located in the "Intersite" folder (based on the intersite metric), while the uMaxPro designs are stored in the "Periodic" folder (criterion defined using the periodic metric).

 

Each .npy file contains ndes optimized designs, each consisting of ns points (levels) within an nv-dimensional unit hypercube (nv is the number of variables/factors).

Individual files can be loaded in Python using NumPy:



import numpy as np

data = np.load(filename)

# data.shape = (ndes, ns, nv)


 

The first dimension of the three-dimensional array data represents the design index (0 to ndes-1), the second dimension corresponds to the sample size (ns), and the third dimension corresponds to the number of variables (nv).