cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17048942.v1
title: Supplementary Material for: Safety and Diagnostic Yield of Radial Probe Endobronchial Ultrasound-Guided Biopsy for Peripheral Lung Lesions in Patients with Idiopathic Pulmonary Fibrosis: A Multicenter Cross-Sectional Study

description: <b><i>Background:</i></b> Radial probe endobronchial ultrasound-guided transbronchial lung biopsy (RP-EBUS-TBLB) is widely used for diagnosis of peripheral lung lesions (PLLs). To date, there have been no reports regarding the clinical outcomes of RP-EBUS-TBLB for PLLs in patients with idiopathic pulmonary fibrosis (IPF). <b><i>Objectives:</i></b> This study was performed between October 2017 and December 2019 to identify the safety and diagnostic performance of RP-EBUS-TBLB in IPF patients. <b><i>Methods:</i></b> Patients were divided into the usual interstitial pneumonia (UIP) group (<i>n</i> = 39, 4%), the probable UIP group (<i>n</i> = 12, 1%), and the noninterstitial lung disease (non-ILD) group (<i>n</i> = 903, 95%). <b><i>Results:</i></b> The diagnostic yield was significantly lower in the UIP group than in the non-ILD group (62% vs. 76%; <i>p</i> = 0.042), but there were no significant differences between the UIP and probable UIP groups (62% vs. 83%; <i>p</i> = 0.293) or the probable UIP and non-ILD groups (83% vs. 76%; <i>p</i> = 0.741). Multivariate logistic analysis showed that the mean diameter of PLLs, positive bronchus sign on CT, and “within the lesion” status on EBUS were independently associated with success of the procedure. Especially, the presence of the UIP pattern on CT (OR, 0.385; 95% CI: 0.172–0.863; <i>p</i> = 0.020) was independently associated with failed diagnosis. Among patients with UIP, “within the lesion” status on EBUS (OR, 25.432; 95% CI: 2.321–278.666; <i>p</i> = 0.008) was shown to be a factor contributing to a successful diagnosis. Overall, there were no significant differences in complication rates among the 3 study groups. <b><i>Conclusion:</i></b> RP-EBUS-TBLB can be performed safely with an acceptable diagnostic yield, even in patients with IPF.
DOI: 10.6084/m9.figshare.24916074.v2
title: Research data

description: This project exclusively utilizes data from the 2023 Global Database on Intergenerational Mobility (GDIM). It is recommended to thoroughly review the GDIM guide for proper usage.
DOI: 10.6084/m9.figshare.25744869.v2
title: <b>Effects of Ericksonian Hypnotherapy Versus Cognitive Behavioral Therapy on Prolonged Grief Among University Students: A Randomized Clinical Trial</b>

description: This study evaluates the comparative effectiveness of Ericksonian Hypnotherapy and Cognitive Behavioral Therapy (CBT) in addressing prolonged grief among university students in Istanbul. Transitioning through critical developmental phases, 39 students who had experienced significant loss and demonstrated symptoms of prolonged grief participated in this randomized controlled trial. They were divided equally into three groups: those receiving Ericksonian Hypnotherapy, those undergoing CBT, and a control group placed on a waiting list. Assessments utilized the Prolonged Grief Scale, Beck Depression Inventory to measure the interventions' impact on grief. Findings revealed significant improvements in both Ericksonian Hypnotherapy and CBT groups compared to the control, with Ericksonian Hypnotherapy showing marginally higher effectiveness in reducing grief symptoms. This research underlines Ericksonian Hypnotherapy's potential as a culturally adaptable and effective treatment for prolonged grief in a diverse academic setting, advocating for its broader application and further exploration across various populations.
DOI: 10.6084/m9.figshare.26381272.v1
title: Azoamicaceae_annotation_files

description: Data files for the genomes described in "Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts".<br><br>Genomes have been uploaded to Genbank, and can be accessed there. The data provided here is to facilitate interpretation of the genomes as described in the manuscript and its supplementary data files. For each of the five genomes, the following data is available:*.db - anvio databasw<br>*.fa - contig fasta<br>*.faa - CDS amino acid fasta<br>*.fna - gene nucleotide fasta<br>*_16S.fasta - 16S fasta<br>*_cog.gff - gff with cog annotations<br>*_kegg.gff - gff with cog annotations <br>*_pfam.gff - gff with cog annotations<br>*_stats - contig statistics calculated using bbmap
DOI: 10.6084/m9.figshare.14582760.v1
title: Budding Epithelial Morphogenesis Driven by Cell-Matrix vs. Cell-Cell Adhesion

description: This dataset includes all raw data of Wang et al., 2021, Budding Epithelial Morphogenesis Driven by Cell-Matrix vs. Cell-Cell Adhesion, except for the scRNA-seq data that is available on GEO (GSE159780). Data organization follows the figures and videos of the paper (see data-layout.png). Paper abstract: Many embryonic organs undergo epithelial morphogenesis to form tree-like hierarchical structures. However, it remains unclear what drives the budding and branching of stratified epithelia, such as in embryonic salivary gland and pancreas. Here, we performed live-organ imaging of mouse embryonic salivary glands at single-cell resolution to reveal that budding morphogenesis is driven by expansion and folding of a distinct epithelial surface cell sheet characterized by strong cell-matrix adhesions and weak cell-cell adhesions. Profiling of single-cell transcriptomes of this epithelium revealed spatial patterns of transcription underlying these cell adhesion differences. We then synthetically reconstituted budding morphogenesis by experimentally suppressing E-cadherin expression and inducing basement membrane formation in 3D spheroid cultures of engineered cells, which required β1 integrin-mediated cell-matrix adhesion for successful budding. Thus, stratified epithelial budding, the key first step of branching morphogenesis, is driven by an overall combination of strong cell-matrix adhesion and weak cell-cell adhesion by peripheral epithelial cells.
DOI: 10.6084/m9.figshare.26526487.v2
title: Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements

description: This repository contain the DefenseFinder software and models used for the study "Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements" as well as the results and the code used to make the different figures of the paper.
DOI: 10.6084/m9.figshare.28005941.v1
title: Supplementary material

description: Contextualization of questions has been suggested to deal with the capabilities of generative AI in an online environment. For this paper we experimented with contextualization to observe how generative AI (in this instance ChatGPT) deals with different elements of contextualization. The experiment used a hypothetical case study for a tailored course in Enterprise Architecture at postgraduate level and looked at contextualization along two axes: (1) Contextualized questioning, and (2) providing different learner contexts in the form of personas to ChatGPT and seeing whether ChatGPT adapted its responses. The contextualized questioning aspects used three different assessments. For the first assessment, individual questions on Enterprise Architecture were asked. For the second and third assessments the case study was used. In the second assessment a general essay that addresses certain elements of Enterprise Architecture was requested, while in the third assessment structured questions on the case study were asked. Responses for each of the assessments were independently marked by the authors, with marking results compared and discussed. The experiment found differences in the quality of responses generated by ChatGPT related to contextualization and degree of structuring in the questions, and in the responses provided to the different personas. Differences in responses to the personas were however not contextualized. It was observed that ChatGPT produced higher quality answers to individually structured questions but fared poorly when prompted for an essay. Educators should therefore contextualize and structure questions in the form of case studies which stimulate learner creativity and critical thinking skills.
DOI: 10.6084/m9.figshare.7542770.v2
title: 2019-01-05 IABD.csv

description: This dataset is to find the relationship between recurrent stroke and inter-arm blood pressure difference in noncardioembolic ischemic stroke patients.
DOI: 10.17632/3w2x9jkvg5
title: Dataset related to Environmental Sustainability factors used by Higher Education Institutions

description: This research aims to develop a hybrid environmental sustainability assessment model capable of assessing the degree of essentiality of environmental sustainability factors in Higher Education Institutions. The dataset was collected online using Google Forms. The survey items were constructed based on the factors found using the content analysis of 47 scientific articles selected systematically in the SCOPUS and ISI Web of Science databases. The questionnaire was prepared based on Lawshe´s Method, so that a sample of 105 participants evaluated each one of them as indispensable, important, unnecessary or I did not understand. Analysis of the articles resulted in 40 factors of environmental sustainability and the highest frequency for assessing the sustainability of Higher Education Institutions. The result of the study allows identifying items covered in the Literature Review and listed in GRI model that are not present in the evaluated models.
DOI: 10.17632/y36ft6wjnn
title: Data for: Petrology of the enriched poikilitic shergottite Northwest Africa 10169: Insight into the martian interior

description: Mineral major and trace element compositions, Bulk rock major and trace element compositions, and melt inclusion compositions of the enriched poikilitic martian meteorite Northwest Africa 10169.
DOI: 10.6084/m9.figshare.12409646.v1
title: Data.sav

description: Data in IBM SPSS. The .sav archive includes all the analyzed data, related to sociodemographic variables and the PICCOLO.
DOI: 10.6084/m9.figshare.16895005.v2
title: Simulation-based analysis of the Postharvest Supply Chain of Tomato for better performance

description: The models used to simulate the scenarios of the postharvest tomato Supply Chain have been attached with the actual variables used.
DOI: 10.6084/m9.figshare.21534594.v2
title: Neratinib binding affinity prediction with HER2 wt and the mutants

description: These are the trajectory files from the MD simulation for HER2 with neratinib bound. After 1 us of MD simulation for three times, for each of the mutant markov modeling was applied and the most probable states from the markov modeling was used for the MMPBSA simulation. This trajectory included here were taken from the markov modeling and then used for the binding affinity and per residue decomposition analysis using MMPBSA.py module in amber.
DOI: 10.6084/m9.figshare.26166976.v2
title: Robust Matrix Completion with Heavy-Tailed Noise

description: This article studies noisy low-rank matrix completion in the presence of heavy-tailed and possibly asymmetric noise, where we aim to estimate an underlying low-rank matrix given a set of highly incomplete noisy entries. Though the matrix completion problem has attracted much attention in the past decade, there is still lack of theoretical understanding when the observations are contaminated by heavy-tailed noises. Prior theory falls short of explaining the empirical results and is unable to capture the optimal dependence of the estimation error on the noise level. In this article, we adopt an adaptive Huber loss to accommodate heavy-tailed noise, which is robust against large and possibly asymmetric errors when the parameter in the Huber loss function is carefully designed to balance the Huberization biases and robustness to outliers. Then, we propose an efficient nonconvex algorithm via a balanced low-rank Burer-Monteiro matrix factorization and gradient descent with robust spectral initialization. We prove that under merely a bounded second-moment condition on the error distributions, rather than the sub-Gaussian assumption, the Euclidean errors of the iterates generated by the proposed algorithm decrease geometrically fast until achieving a minimax-optimal statistical estimation error, which has the same order as that in the sub-Gaussian case. The key technique behind this significant advancement is a powerful leave-one-out analysis framework. The theoretical results are corroborated by our numerical studies. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.27366249.v1
title: ROB2_IRPG_beta_v9_MucolyticRv_final.xlsm

description: Online risk of bias tool of cochrane review
DOI: 10.6084/m9.figshare.11561802.v1
title: Code and data to reproduce "Spatial variation in species roles in host-helminth networks"

description: Code and data to reproduce <br>&gt; Dallas, TA and P Jordano. 2021 "Spatial variation in species roles in host-helminth networks" <br>If using the data from this project, please cite the original data owners<br>&gt; Gibson, D. et al. 2005. Host–parasite database of the natural history museum, London. – &lt; www.nhm.ac.uk/research‐curation/scientific‐resources/taxonomy‐systematics/host‐parasites/database/index.jsp &gt;
DOI: 10.6084/m9.figshare.13292174.v2
title: Digitisation of Trzhaskovskaya Dirac-Fock Photoionisation Parameters for HAXPES Applications, Part II

description: This document provides a digitised version of the tabulated Dirac-Fock photoionisation parameters for HAXPES applications, Part II: Inner atomic shells (2019), calculated by M.B. Trzhaskovskaya and V.G. Yarzhemsky. The data from the original paper was mined, checked and deposited into a Microsoft Excel spreadsheet for easy access.
DOI: 10.6084/m9.figshare.14370908.v1
title: Data Analysis from: Research about low birth weight in Cuba: analysis in Cuban medical journals, 2015-2020.

description: The primary data used in research related to the characterization of the scientific domain on low birth weight in Cuba are presented. Cuban medical journals certified by the Cuban Ministry of Science, Technology and Environment (CITMA) were used during the 2015-2020 period.
DOI: 10.6084/m9.figshare.19457842.v1
title: CSF/plasma levels, transthyretin stabilisation and safety of multiple doses of tolcapone in subjects with hereditary ATTR amyloidosis

description: To investigate the effect of tolcapone on cerebrospinal fluid (CSF) transthyretin (TTR) tetramer stability in patients with hereditary transthyretin (ATTRv) amyloidosis. A total of 9 patients were enrolled in the study (3 men, 50.3 ± 14.4 years old). Three patients had central nervous system (CNS) involvement. Patients were assigned to receive tolcapone 300 mg/day or 600 mg/day for 7 days. Plasma and CSF were collected at baseline and 2 h after the final tolcapone dose. The mean CSF tolcapone and 3-O-Methyltolcapone (3-OMT) concentration were 39.4 ± 36.3 ng/mL and 26.0 ± 4.9 ng/mL, respectively, after 7 days of tolcapone dosing. Tolcapone and 3-OMT were detected in the CSF of patients with or without CNS symptoms. The mean total study drug (tolcapone + 3-OMT) to TTR molar ratio in CSF was 1.15 ± 0.59. Orally administered tolcapone significantly increased CSF TTR concentration and decreased monomer content under semi-denaturing conditions. Eight adverse events (AEs) were reported in 6 patients. All AEs were mild in severity and resolved. Tolcapone was able to cross the blood brain-barrier, highlighting its potential to decrease CNS manifestations of ATTRv amyloidosis. Tolcapone was well tolerated by patients with ATTRv amyloidosis.
DOI: 10.17632/hzmzt2p7yb
title: IBAR: Interacting boson model calculations for large system sizes

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract Scaling the system size of the interacting boson model-1 (IBM-1) into the realm of hundreds of bosons has many interesting applications in the field of nuclear structure, most notably quantum phase transitions in nuclei. We introduce IBAR, a new software package for calculating the eigenvalues and eigenvectors of the IBM-1 Hamiltonian, for large numbers of bosons. Energies and wavefunctions of the nuclear states, as well as transition strengths between them, are calculated using these values.... Title of program: IBAR Catalogue Id: AELI_v1_0 Nature of problem Construction and diagonalization of large Hamiltonian matrices, using reduced matrix elements of the d-boson creation operator. Versions of this program held in the CPC repository in Mendeley Data AELI_v1_0; IBAR; 10.1016/j.cpc.2011.12.024
DOI: 10.6084/m9.figshare.13827530.v1
title: Stochastic Photometric Variability of WR Stars - Online Material

description: De-trended photometric data of 50 Wolf-Rayet stars with 122 datasets ; 7 from BRITE-Constellation satellites, 6 from MOST and 109 from TESS. The TESS datasets are separated between the three time-sampling cadences of the telescope. We also include images in .eps format of these light-curves, as well as images in .eps format of all the periodograms of the stars in our sample fitted with the semi-Lorentzian model described in the article.
DOI: 10.6084/m9.figshare.25282459.v3
title: Global Disparities in CKD clinical trials data

description: This data were utilized to conduct a systematic review of pharmacological chronic kidney disease (CKD) randomized controlled trials (RCTs) published between 2003-2023. The primary aim of the review was to describe the global distribution of CKD RCTs, as well as an in-depth description of potential disparities.<br>v3: addition of language and funding data.
DOI: 10.6084/m9.figshare.26391427.v1
title: <b>The Income Redistribution Effect of the Korean Bend Points Scheme: An Analysis of South Korea's 5th National Pension Comprehensive Plan (Draft)</b>

description: In this paper, we elucidate the income redistribution effects of the Korean Bend Points Scheme (KBPS) through micro-simulation analysis using individual data from the Korean Labor & Income Panel Study (KLIPS). In addition to examining the effects of introducing the KBPS into the current National Pension Scheme (NPS), we also consider the impact when this scheme is combined with the 5th National Pension Comprehensive Plan (Draft), announced by the Korea’s Ministry of Health and Welfare on October 30, 2023.
DOI: 10.17632/t5sc5pw6xj
title: Financial capability and satisfaction

description: This dataset was utilized in a study that examined the effects of financial capability as a direct predictor of financial satisfaction. The study also investigated the role of saving behaviour as a mediator. The purpose of this paper is to empirically test the effects of financial capability (i.e., financial risk tolerance, financial literacy, planned time horizon, delayed gratification, and financial situation) as a predictor of financial satisfaction. It also examines the mediation effects of saving behaviour on the relationship between financial capability and satisfaction. The conceptual framework depicting a series of relationships was formulated based on insights from the Behavioural Life Cycle Theory. A sample of 621 working adults completed a self-administered questionnaire. The results from Multiple Regression Analysis indicated that the most influential predictor of financial satisfaction is financial situation, which had a negative effect. Delayed gratification, financial risk tolerance and financial literacy registered positive and significant effects on financial satisfaction while planned time horizon did not. The results on mediation showed that the relationship between delayed gratification and financial satisfaction is significantly mediated by saving rate. However, saving intentions significantly mediated the relationship between financial risk tolerance and satisfaction as well as between planned time horizon and financial satisfaction. This study is one of the few in the literature that attempts to examine both direct and indirect effects of predictors of financial satisfaction, by focussing on the mediating effects of saving behaviour. Findings contribute to the body of knowledge in the field of personal finance. Additionally, they will guide financial planning efforts and policies that are designed to enhance quality of life through financial satisfaction.
DOI: 10.17632/vr86wvd3k3
title: Aluminium Beverage Can 330ml Sleek Size Production Quality Data set for different Production Stages

description: Data were collected from a controlled aluminium can manufacturing environment over the course of one week during regular production shifts. A systematic random sampling technique was employed to ensure that the data were representative of typical process conditions.
For each batch produced, samples were taken at predetermined intervals, capturing real-time production conditions. A total of 10 samples were collected for each of the six critical quality parameters:

Bright Can Axial Load
Finished Can Height
Flange Width
Groove Diameter after Reformer
Dome Depth with Reformer
Finished Can Buckle Pressure
DOI: 10.6084/m9.figshare.12816437.v1
title: Data for "Machine Learning Predictions of Irradiation Embrittlement in Reactor Pressure Vessel Steels"

description: To ensure all publicly available data used in this paper are easily accessible and adequately archived, we have placed the following files in the SI and on Figshare with DOI 10.6084/m9.figshare.12816437. The IVAR+ database is not publicly available and therefore this data is not included in any of the shared files. Requests for the IVAR+ data should be sent to G. R. Odette at odette@engineering.ucsb.edu. The databases used in this study are still under development. The part analyzed here is available upon request to evaluate the correctness of our results but based on an agreement that there would not be further dissemination.1. Figures Data: Fig X.csv and Fig SX.csv contain all the data used to make Figure X and Figure SX in the manuscript and the SI, respectively, except for the data that may directly revealed the experimentally determined of a given alloy composition.2. Tables Data: Table X.csv and Table SX.csv contain all the data used to make Table X and Table SX in the manuscript and the SI, respectively.3. Model parameters: Model_coef_X.csv and Model_kernel_X.csv contain the coefficient and the Gaussian kernel matrix that we used in creating the model at the full-fit prediction, where X is CD or Expt, accounting for using CD-IVAR+ and IVAR+ as the training data set.
DOI: 10.6084/m9.figshare.13221674.v1
title: Near Complete Bins Almeida dataset part A

description: Near Complete bacterial genomes produced by VAMB from the Almeida et al., (Nature, 2019) benchmark dataset (1,000 human gut microbiome samples). This is part 1 of 5
DOI: 10.6084/m9.figshare.24501241.v1
title: Dynamic resonance fluorescence in solid-state cavity quantum electrodynamics

description: Source date in .mat format and matlab scripts for preparing the figures in the main text and Extended data section.
DOI: 10.17632/5vd9hgh3pv
title: Data for: Comparing hydraulic and GIS-based Height Above the Nearest Drainage model for fluvial flood hazard mapping: a case study

description: Input and resulting data for flood extent and flow depth modeling via MIKE+ and HAND models.