cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30969908
title: Additional file 2 of Single-cell RNA-seq analysis of longitudinal CD4+ T cell samples reveals cell-type-specific changes during early stages of type 1 diabetes

description: Supplementary Material 2. Table S1: Metadata table. Table S2: Cell hashing antibody for cell multiplexing used for scRNA-seq. Table S3. Sample staining and pooling scheme used for scRNA-seq Table S4. Marker gene list for all ten clusters annotated. Table S5 – S14: Linear Mixed Effext (LME) modelling analysis for genes affected by status (Case vs Control), age, sex and interaction of status and age in all ten clusters annotated. Table S15: ROTS analysis for genes affected by status at five timepoints. Table S16: GSEA results on T1D status associated genes from LME analysis across seven cell types. Table S17: GSEA results on T1D status associated genes from ROTS analysis across cell types identified five timepoints. Table S18: Regulon specificity score for all 245 regulons identified across ten cell types. Table S19: GO over-representaion results for differentially expressed regulons together with their target genes.
DOI: 10.6084/m9.figshare.30969908.v1
title: Additional file 2 of Single-cell RNA-seq analysis of longitudinal CD4+ T cell samples reveals cell-type-specific changes during early stages of type 1 diabetes

description: Supplementary Material 2. Table S1: Metadata table. Table S2: Cell hashing antibody for cell multiplexing used for scRNA-seq. Table S3. Sample staining and pooling scheme used for scRNA-seq Table S4. Marker gene list for all ten clusters annotated. Table S5 – S14: Linear Mixed Effext (LME) modelling analysis for genes affected by status (Case vs Control), age, sex and interaction of status and age in all ten clusters annotated. Table S15: ROTS analysis for genes affected by status at five timepoints. Table S16: GSEA results on T1D status associated genes from LME analysis across seven cell types. Table S17: GSEA results on T1D status associated genes from ROTS analysis across cell types identified five timepoints. Table S18: Regulon specificity score for all 245 regulons identified across ten cell types. Table S19: GO over-representaion results for differentially expressed regulons together with their target genes.
DOI: 10.15468/dl.6hm6h6
title: Occurrence Download

description: A dataset containing 2097 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is one of (South America, North America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eutoxeres condamini"
 ]
}

 The dataset includes 2097 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068958-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30969951
title: Additional file 1 of New insights into mitochondrial segregation from the Doubly Uniparental Inheritance system in bivalves

description: Additional file 1: Supplementary Tables 1-20. TabS1 - Percentage of female and male developing embryos from each egg sample. TabS2 – Quantification of rRNA-depleted extraction for each sample. TabS3 – Sequencing and mapping results. TabS4 – Expression quantification for each feature in each sample. TabS5 – Differential expression between female- and male-biased samples. TabS6 – GO term enrichment in DE PCGs. TabS7 – annotation of DE PCGs. TabS8 – Network metrics of STRING-inferred PPIs across DE PCGs. TabS9 – LncRNAs annotation and analyses. TabS10 – Evolutionary analyses Dataset. TabS11– Statistics of OrthoGroup assignments. TabS12 – Results of TRACCER analyses. TabS13 – Results of CODEML analyses. TabS14 – Results of Evolutionary Rate Covariation with mitochondrial genes. TabS15 – Statistical test for overrepresentation of genes covarying with mitochondrial genes among CE PCGs. TabS16 – GO term enrichment in CE PCGs. TabS17– Network metrics of STRING-inferred PPIs across CE PCGs. TabS18 – Network metrics of STRING-inferred PPIs across CE and DE PCGs combined. TabS19 - Cluster association for each genes showing protein-protein interactions in network of DE genes and CE genes. TabS20 - Network metrics of the largest PPI subnetwork. TabS21 – GO term enrichment for components of the subnetworks (DE and CE genes separately). TabS22 - Kolmogorov–Smirnov tests evaluating the differential contributions of DE and CE to network metrics distributions.
DOI: 10.6084/m9.figshare.30969951.v1
title: Additional file 1 of New insights into mitochondrial segregation from the Doubly Uniparental Inheritance system in bivalves

description: Additional file 1: Supplementary Tables 1-20. TabS1 - Percentage of female and male developing embryos from each egg sample. TabS2 – Quantification of rRNA-depleted extraction for each sample. TabS3 – Sequencing and mapping results. TabS4 – Expression quantification for each feature in each sample. TabS5 – Differential expression between female- and male-biased samples. TabS6 – GO term enrichment in DE PCGs. TabS7 – annotation of DE PCGs. TabS8 – Network metrics of STRING-inferred PPIs across DE PCGs. TabS9 – LncRNAs annotation and analyses. TabS10 – Evolutionary analyses Dataset. TabS11– Statistics of OrthoGroup assignments. TabS12 – Results of TRACCER analyses. TabS13 – Results of CODEML analyses. TabS14 – Results of Evolutionary Rate Covariation with mitochondrial genes. TabS15 – Statistical test for overrepresentation of genes covarying with mitochondrial genes among CE PCGs. TabS16 – GO term enrichment in CE PCGs. TabS17– Network metrics of STRING-inferred PPIs across CE PCGs. TabS18 – Network metrics of STRING-inferred PPIs across CE and DE PCGs combined. TabS19 - Cluster association for each genes showing protein-protein interactions in network of DE genes and CE genes. TabS20 - Network metrics of the largest PPI subnetwork. TabS21 – GO term enrichment for components of the subnetworks (DE and CE genes separately). TabS22 - Kolmogorov–Smirnov tests evaluating the differential contributions of DE and CE to network metrics distributions.
DOI: 10.6084/m9.figshare.30969956
title: Additional file 1 of Trends, lag and characteristics of rare disease drug approval in the USA and China, 1983–2022

description: Supplementary Material 1
DOI: 10.57760/sciencedb.34204
title: OSCAR Functions as a Collagen I Receptor to Suppress Hippo Signaling and Reprogram Lipid Metabolism in Clear-Cell Renal Cell Carcinoma
title: OSCAR Functions as a Collagen I Receptor to Suppress Hippo Signaling and Reprogram Lipid Metabolism in Clear-Cell Renal Cell Carcinoma

description: This dataset contains the supplementary data used in the research related to clear-cell renal cell carcinoma titled "OSCAR Functions as a Collagen I Receptor to Suppress Hippo Signaling and Reprogram Lipid Metabolism in Clear-Cell Renal Cell Carcinoma".
description: This dataset contains the supplementary data used in the research related to clear-cell renal cell carcinoma titled "OSCAR Functions as a Collagen I Receptor to Suppress Hippo Signaling and Reprogram Lipid Metabolism in Clear-Cell Renal Cell Carcinoma".
DOI: 10.57760/sciencedb.33559
title: HPRC samples R9.4.1 bam files (7)
title: HPRC samples R9.4.1 bam files (7)

description: Raw basecalled BAM files were downloaded from human pangenome reference consortium https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=working/.BAM files were re-aligned to the GRCh38 reference genome (GenBank assembly ID GCA_000001405.15) using Dorado v0.7.2 with command "dorado aligner -t 80 --mm2-preset "-x map-ont" ${reference.fa} ${input.bam} --output-dir ${outdir}/${output}", followed by catting, sorting , and indexing with Samtools.
description: Raw basecalled BAM files were downloaded from human pangenome reference consortium https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=working/.BAM files were re-aligned to the GRCh38 reference genome (GenBank assembly ID GCA_000001405.15) using Dorado v0.7.2 with command "dorado aligner -t 80 --mm2-preset "-x map-ont" ${reference.fa} ${input.bam} --output-dir ${outdir}/${output}", followed by catting, sorting , and indexing with Samtools.
DOI: 10.6084/m9.figshare.30969956.v1
title: Additional file 1 of Trends, lag and characteristics of rare disease drug approval in the USA and China, 1983–2022

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30969959
title: Additional file 2 of Trends, lag and characteristics of rare disease drug approval in the USA and China, 1983–2022

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30969959.v1
title: Additional file 2 of Trends, lag and characteristics of rare disease drug approval in the USA and China, 1983–2022

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30969965
title: Additional file 4 of Trends, lag and characteristics of rare disease drug approval in the USA and China, 1983–2022

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30969965.v1
title: Additional file 4 of Trends, lag and characteristics of rare disease drug approval in the USA and China, 1983–2022

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.30969963
title: Additional file 2 of Clinical utility of metagenomic next-generation sequencing (mNGS) and a novel PCR-based point-of-care testing (POCT) for pathogen detection in pulmonary infections: a retrospective study

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30969963.v1
title: Additional file 2 of Clinical utility of metagenomic next-generation sequencing (mNGS) and a novel PCR-based point-of-care testing (POCT) for pathogen detection in pulmonary infections: a retrospective study

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30969966
title: Additional file 3 of Clinical utility of metagenomic next-generation sequencing (mNGS) and a novel PCR-based point-of-care testing (POCT) for pathogen detection in pulmonary infections: a retrospective study

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.30969971.v1
title: Additional file 2 of Climate-driven infectious disease risks: a global scoping review of epidemiological patterns, methodological gaps, and policy imperatives

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30969971
title: Additional file 2 of Climate-driven infectious disease risks: a global scoping review of epidemiological patterns, methodological gaps, and policy imperatives

description: Supplementary Material 2
DOI: 10.57760/sciencedb.34045
title: Hypervirulent Klebsiella Pneumonia induces Liver Abscess by promoting Neutrophil Extracellular Trap Formation through Activating NLRP3 Inflammasome
title: Hypervirulent Klebsiella Pneumonia induces Liver Abscess by promoting Neutrophil Extracellular Trap Formation through Activating NLRP3 Inflammasome

description: Hypervirulent Klebsiella pneumoniae (hvKP) has spread globally since first described in the Asian Pacific Rim. Neutrophil extracellular trap formation (NETosis) is a crucial anti-infection mechanism of neutrophils. However, the role of hvKP pathogenicity on neutrophil extracellular trap formation remains unclear. Here we show the influence of hvKP strain NTUH-K2044 on NETosis and related mechanisms. We investigate that hvKP significantly lead to liver abscess and a large number of neutrophils infiltration in liver tissues from murine models and had hypermucoviscosity by carried rmpA gene. hvKP enhanced the protein levels of MPO and promoted the chromatin depolymerization of human peripheral blood neutrophils compared with classic Klebsiella pneumonia (cKP) strain HS11286. In addition, hvKP markedly promoted the ROS and cytokines levels in neutrophils. Moreover, hvKP significantly accelerated the activation of NLRP3 inflammatory and the production of NETosis compared with cKP in neutrophils. Therefore, hvKP has a stronger ability to resist neutrophil killing and promote the activation of NLRP3 inflammatory and induce NETosis. Our findings provide a novel mechanism underlying of hvKP innate immune evasion
description: Hypervirulent Klebsiella pneumoniae (hvKP) has spread globally since first described in the Asian Pacific Rim. Neutrophil extracellular trap formation (NETosis) is a crucial anti-infection mechanism of neutrophils. However, the role of hvKP pathogenicity on neutrophil extracellular trap formation remains unclear. Here we show the influence of hvKP strain NTUH-K2044 on NETosis and related mechanisms. We investigate that hvKP significantly lead to liver abscess and a large number of neutrophils infiltration in liver tissues from murine models and had hypermucoviscosity by carried rmpA gene. hvKP enhanced the protein levels of MPO and promoted the chromatin depolymerization of human peripheral blood neutrophils compared with classic Klebsiella pneumonia (cKP) strain HS11286. In addition, hvKP markedly promoted the ROS and cytokines levels in neutrophils. Moreover, hvKP significantly accelerated the activation of NLRP3 inflammatory and the production of NETosis compared with cKP in neutrophils. Therefore, hvKP has a stronger ability to resist neutrophil killing and promote the activation of NLRP3 inflammatory and induce NETosis. Our findings provide a novel mechanism underlying of hvKP innate immune evasion
DOI: 10.15468/dl.sew2u2
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Moschus moschiferus)",
 "HasCoordinate is true",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 58 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068959-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30969998
title: Additional file 7 of How can physical enrichment of school playgrounds improve movement behaviours and developmental outcomes in children and adolescents? A systematic review with meta-analysis

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.30969998.v1
title: Additional file 7 of How can physical enrichment of school playgrounds improve movement behaviours and developmental outcomes in children and adolescents? A systematic review with meta-analysis

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.30970010
title: Additional file 1 of Viral etiology of acute respiratory infections in Sub-Saharan Africa during the pre-COVID-19 period (2006–2019): a systematic review and meta-analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30970010.v1
title: Additional file 1 of Viral etiology of acute respiratory infections in Sub-Saharan Africa during the pre-COVID-19 period (2006–2019): a systematic review and meta-analysis

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30970013
title: Additional file 2 of Viral etiology of acute respiratory infections in Sub-Saharan Africa during the pre-COVID-19 period (2006–2019): a systematic review and meta-analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30970013.v1
title: Additional file 2 of Viral etiology of acute respiratory infections in Sub-Saharan Africa during the pre-COVID-19 period (2006–2019): a systematic review and meta-analysis

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30970016
title: Additional file 1 of Enhancing cardiomyocyte reprogramming efficiency by targeting cellular senescence is mediated via Rb1 gene

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30970016.v1
title: Additional file 1 of Enhancing cardiomyocyte reprogramming efficiency by targeting cellular senescence is mediated via Rb1 gene

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30970040
title: Additional file 2 of Identification, pathogenicity, and virulence of the causal agent of bacterial scab disease on mango in China

description: Additional file 2: Supplementary Information Additional file 2: Table S1. Primers used in this study. Table S2. GenBank accession number of strains used in this study. Table S3. The media used in this study. Table S4. Concentrations of substances used for fungicide sensitivity assays. Table S5. Isolation rates of three types of colonies in infected fruits.
DOI: 10.6084/m9.figshare.30970040.v1
title: Additional file 2 of Identification, pathogenicity, and virulence of the causal agent of bacterial scab disease on mango in China

description: Additional file 2: Supplementary Information Additional file 2: Table S1. Primers used in this study. Table S2. GenBank accession number of strains used in this study. Table S3. The media used in this study. Table S4. Concentrations of substances used for fungicide sensitivity assays. Table S5. Isolation rates of three types of colonies in infected fruits.
DOI: 10.6084/m9.figshare.30970055
title: Additional file 1 of Multiomics analysis revealed the temporally common and specific molecular changes in Arabidopsis thaliana (L.) under salt stress

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30970055.v1
title: Additional file 1 of Multiomics analysis revealed the temporally common and specific molecular changes in Arabidopsis thaliana (L.) under salt stress

description: Supplementary Material 1.
DOI: 10.57760/sciencedb.34247
title: Genome alignment SNP Data
title: Genome alignment SNP Data

description: Single Nucleotide Polymorphisms (SNPs) of three desert fish species, including Triplophysa tenuis, Triplophysa bombifrons, and Hedinichthys yarkandensis were obtained via Genotyping-by-Sequencing (GBS).
description: Single Nucleotide Polymorphisms (SNPs) of three desert fish species, including Triplophysa tenuis, Triplophysa bombifrons, and Hedinichthys yarkandensis were obtained via Genotyping-by-Sequencing (GBS).
DOI: 10.6084/m9.figshare.30970053
title: Additional file 1 of Fusobacterium nucleatum-reprogrammed adipocytes promote tumor cisplatin resistance through the CCL2-CCR2 axis in the necrotic metastatic neck nodes of head and neck carcinoma

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30970053.v1
title: Additional file 1 of Fusobacterium nucleatum-reprogrammed adipocytes promote tumor cisplatin resistance through the CCL2-CCR2 axis in the necrotic metastatic neck nodes of head and neck carcinoma

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30970074
title: Additional file 2 of Parasagittal subdural space: a novel quantitative marker of spontaneous intracranial hypotension syndrome-induced chronic subdural hematoma

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30970074.v1
title: Additional file 2 of Parasagittal subdural space: a novel quantitative marker of spontaneous intracranial hypotension syndrome-induced chronic subdural hematoma

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30970080
title: Additional file 1 of Genomic ancestry and adaptive signatures in the indigenous Hetian cattle from Xinjiang Province of China revealed by whole-genome sequencing

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30970080.v1
title: Additional file 1 of Genomic ancestry and adaptive signatures in the indigenous Hetian cattle from Xinjiang Province of China revealed by whole-genome sequencing

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.30970086
title: Additional file 2 of Longitudinal analysis of electronic health records reveals medical conditions associated with subsequent Alzheimer’s disease development

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30970086.v1
title: Additional file 2 of Longitudinal analysis of electronic health records reveals medical conditions associated with subsequent Alzheimer’s disease development

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.30970118.v1
title: Additional file 1 of Urea functions as a risk signal driving astrocyte-mediated neuroinflammation following stroke

description: Supplementary Material 1.
DOI: 10.15468/dl.43bp99
title: Occurrence Download

description: A dataset containing 248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus acrodonta"
 ]
}

 The dataset includes 248 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068960-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4q4h5
title: Occurrence Download

description: A dataset containing 20389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Alces alces (Linnaeus, 1758)"
 ]
}

 The dataset includes 20389 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041331-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wga6m7
title: Occurrence Download

description: A dataset containing 57797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton pusillus L."
 ]
}

 The dataset includes 57797 records from 563 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107851-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t82hrs
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloscopus hainanus Olsson, Alstrom & Colston, 1993"
 ]
}

 The dataset includes 262 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041299-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hpenq
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton sibiricus A.Benn."
 ]
}

 The dataset includes 228 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107867-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtrvr7
title: Occurrence Download

description: A dataset containing 43189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Parus minor Temminck & Schlegel, 1848"
 ]
}

 The dataset includes 43189 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008584-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hynjwm
title: Occurrence Download

description: A dataset containing 714 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Salmo salar Linnaeus, 1758"
 ]
}

 The dataset includes 714 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041305-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.