cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/9w7-8b6-xek
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080028/2543858
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/ab3-cy2-kch
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dnr-jkg-frf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/acn-ca7-xrz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tnn-2et-jc5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h8l-kp0-5nm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qxz-aha-nvg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080029/2543859
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/167-y8c-2wk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/73z-0tc-9h3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2lt-d01-rc5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hc8-w6q-qqn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/exe-70z-r6m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/llc-q64-h3g
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080031/2543860
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/t1k-9wv-hfm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t6m-nhy-chc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8dr-0wf-0ke
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dc6-nbq-f0r
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zzf-bwk-dgz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5yq-07g-cb4
title: Dendrinidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qpy-hpy-71c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080032/2543861
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/8as-yz9-vwm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w3s-3b9-0p1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8wj-ddj-48e
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e6r-w30-9dy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0tk-hsq-bmy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xq4-wpp-rf8
title: Holoptychiidae gen. nov.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080034/2543862
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/53x-gp0-epc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yqp-azd-6ve
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0ks-ba4-ks2
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y7t-z6c-asy
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dcw-mzf-s27
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p23-zw5-d57
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080036/2543863
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/1qh-jmn-q2p
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vrw-650-el0
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8ke-eat-z83
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/95j-cle-36h
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e4p-4je-n6d
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xn2-6d1-6rs
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080040/2543864
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/4tp-gzk-1de
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/74v-873-b67
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/byz-8f4-b5h
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a8w-mdx-ffb
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cjt-0p8-qgq
title: †Plectambonitidae Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080041/2543865
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/6sh-en2-m3m
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/76p-raq-p23
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1p8-xwm-b3x
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5cd-23y-2l8
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zcy-lcx-tfz
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e6t-9fn-d2k
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zgq-jz9-qnk
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0gk-p7k-et9
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080042/2543866
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/112-qel-cj8
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yzw-l9h-34m
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/61g-03f-8d7
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pw1-tf5-hr1
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q9m-hka-5jv
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wqb-hnq-4jt
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080043/2543867
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/hrz-dvb-4t7
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q87-vr4-r1d
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1sn-h5w-hjt
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hga-sx4-zqa
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/9ds-n7p-akj
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/snt-pcs-x3l
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080045/2543868
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/10f-tlr-b0h
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jzm-8pl-5za
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/89l-vzz-zds
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cjg-vlv-fk3
title: †Dalmanellidae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ck8-rfa-ebt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kr4-m8f-jvq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3x4-8nk-ngy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ynh-1ed-jxd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080050/2543869
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/ahc-l23-h41
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z68-we2-tt4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3cz-s78-4k9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tdf-363-slh
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.gxk35z
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Angelica polymorpha Maxim.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "CoordinateUncertaintyInMeters is less than 1e+05",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 345 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011446-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9y3-bjc-f1v
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/heh-pv8-l2h
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080052/2543870
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/9d2-6cf-a17
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pjh-gh7-x9x
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bht-7m6-p1c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gdy-gbw-ztx
title: †Orthoidea Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/64y-9yg-ahw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gvt-81b-f5l
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080053/2543871
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/qf7-jxy-t4p
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y63-hqg-n94
title: †Orthoidea Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wc7-wd4-d4c
title: †Orthoidea Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y0r-a0p-x84
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/17a-bgy-4hp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080054/2543872
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/epk-k48-7z7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p58-1mh-d26
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/53e-s54-alp
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fcb-qp2-6eg
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ajg-n7y-l6g
title: †Orthoidea Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rvk-wk8-8ae
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mpn-xeg-bhf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zjg-8rl-a6x
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080055/2543873
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/b6k-9tj-bh2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kh1-9wx-rlx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c3v-0vq-288
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w1a-92t-psk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ggn-j3v-stb
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.25582/data.2024-03.3080056/2543874
title: Data for EMSL Project 51287 from March 2024
DOI: 10.3535/40h-nd0-ep1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/knm-g6g-jfl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mdd-x8h-jwb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q8k-w61-kns
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/x65-nmr-1vv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.15088929
title: Bed Surface Profiling (BSP) data used for calculating pickup probability

description: Bed Surface Profiling (BSP) data

The Bed Surface Profiling (BSP) data scanned by an underwater 3D laser scanner for different flow conditions (Case Nos. 1-12). The sampling rate was 10 Hz. Each line of data corresponds to the xyz point cloud data, where x-direction corresponds to streamwise direction, y-direction to trnasverse dirction, and z-dirction to vertical direction. 

Code

A python code is included to process the BSP data for calculating sediment pickup probability for each case. This code analyzes 12 case files (Case1.txt to Case12.txt) containing measurement data, processes them using dynamic denoising filters, and calculates a derived metric (p_value) for each case. The results are saved in an Excel file.

Key Components





Dynamic Denoising Filter (dynamic_denoise_filter):



Implements two filtering schemes based on parameter d:



3-Window Rule (d=0.00185): Checks immediate neighbors (previous and next columns) to correct 0, 1, or -1 values.

11-Window Rule (d=0.00380): Uses a larger window (11 columns) with different criteria:



For zeros: Requires immediate neighbors (columns 4 and 6) to be zero.

For ±1: Requires all non-center columns (first 5 and last 5) to match the target value.









Case Processing (process_case):



Data Loading: Reads CSV-like files, extracts y (2nd column) and z (3rd column) values.

Derivative Calculation: Computes dz as the finite difference of z values scaled by d.

Marker Matrix: Creates a matrix m marking regions where dz exceeds ±0.

Denoising: Applies dynamic_denoise_filter to clean the marker matrix.

p-value Calculation:



Computes y_diff as half the absolute difference between adjacent y values.

Identifies valid transitions (1 → -1) in the denoised matrix.

Aggregates weighted counts and normalizes by the total y range.







Parameter Settings:



**d Values**:



0.00185 for Cases 1–6

0.00380 for Cases 7–12



Critical Value (cr): Set to 0 for thresholding dz.

Data Directory: Configured as D:/data_ana_ca.





Output:



Results are saved in analysis_result_ca_cr.xlsx with columns Case and p_value.




Usage



Input: 12 text files (Case1.txt to Case12.txt) with comma-separated data.

Output: Excel file containing calculated p-values.

Runtime Monitoring: Prints processing time for each case during execution.


The code efficiently handles large datasets using vectorized operations and sliding window techniques, ensuring scalability for similar analytical tasks.