cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dns3p4
title: Occurrence Download

description: A dataset containing 1234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mustelus mustelus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 1234 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004499-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8vnet
title: Occurrence Download

description: A dataset containing 183081 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centaurea nigra L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 183081 records from 953 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008040-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/2gjtzv
title: Replication Data for: Tourism Growth, Education Decline: Evidence from China’s 5A Attraction Expansion

description: The programs replicate tables and figures from "Tourism Growth, Education Decline: Evidence from China’s 5A Attraction Expansion," by He, Zeyi, Hu, Zhi-An, Huang, Wei and Kang, Yankun. Please see the readme file for additional details. (2025-09-24)
DOI: 10.15468/dl.49td93
title: Occurrence Download

description: A dataset containing 2140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((94.12044 6.22745,155.84785 6.22745,155.84785 43.50916,94.12044 43.50916,94.12044 6.22745))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cymbopogon goeringii"
 ]
}

 The dataset includes 2140 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019346-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zewx52
title: Occurrence Download

description: A dataset containing 11801 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Claytonia caroliniana)"
 ]
}

 The dataset includes 11801 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019345-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajgbvk
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ampittia dioscorides",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 89 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019347-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/3bzkwt
title: Thrips (Thysanoptera) in Norway

description: Thrips in Norway.
DOI: 10.21227/7hxv-y160
title: "Supplementary Material for Mutagenesis Screen of Large Language Model"

description: "Large Language Models (LLMs) have driven major advances in artificial intelligence, demonstrating remarkable proficiency across diverse tasks. However, despite the fact that functionality is ultimately realized through parameter interactions, a systematic framework to map parameter\u2013function relationships remains undeveloped. Inspired by biological mutagenesis, we introduce a mutagenesis screen approach for LLMs: a scalable method to systematically perturb model parameters and analyze the resulting functional changes. By replacing matrix elements with their maximum or minimum values and identifying which mutations produce outputs that differ from those of the unaltered standard model\u2014referred to hereafter, in biological terminology, as \u201cphenotypes\u201d\u2014this method enables controlled exploration of parameter contributions across benchmarks and models. Applying this approach to Llama2-7B and Zephyr, we uncover structured patterns at multiple levels. Many matrices exhibit mixed sensitivity to perturbations, while others show a strong bias toward a single mutation type. Output-altering mutations, particularly those with severe effects, tend to cluster along axes, with maximum and minimum mutations forming complementary distributions. Notably, the Gate matrix reveals a distinct two-dimensional asymmetry. In Zephyr, specific mutations consistently yielded poetic or conversational outputs rather than descriptive ones. These \"writer\" mutations were characterized by recurring initial words and shared row coordinates across matrices. Beyond these, the mutagenesis screen reveals marked structural and functional differences between Llama2-7B and Zephyr, providing a comparative map of their parameter landscapes. Collectively, these results highlight mutagenesis screens as a powerful tool for dissecting LLM mechanisms, offering granular insights into model organization, and guiding future refinement."
DOI: 10.15468/dl.qm85t3
title: Occurrence Download

description: A dataset containing 2643 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Boana faber"
 ]
}

 The dataset includes 2643 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019348-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gk9gvw
title: Occurrence Download

description: A dataset containing 54253 records in GBIF matching the query:
SELECT "year", GBIF_EQDGCode(2, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 27000)) AS qdgcCode,speciesKey,species, family,COUNT(*) AS n,MIN(COALESCE(coordinateUncertaintyInMeters, 27000)) AS minCoordinateUncertaintyInMeters, IF(ISNULL(family), NULL, SUM(COUNT(*)) OVER (PARTITION BY family)) AS familyCount FROM occurrence WHERE class = 'Aves' AND occurrenceStatus = 'PRESENT'AND (coordinateUncertaintyInMeters &lt;= 27000) AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN') AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND level1Gid = 'ZAF.9_1' AND speciesKey IS NOT NULL AND decimalLatitude IS NOT NULL AND decimalLongitude IS NOT NULL AND collectionCode != 'SABAP2' GROUP BY "year", qdgcCode, speciesKey, family, species ORDER BY "year" ASC, qdgcCode ASC, speciesKey ASC

 The dataset's 54253 records were derived from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019332-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e228584
title: Data and Code for: "Apart but Connected: Online Tutoring, Cognitive Outcomes, and Soft Skills"

description: We study the Tutoring Online Program (TOP), where tutoring is entirely online
and tutors are volunteer university students, matched with underprivileged middle
school students. We leverage random assignment to estimate effects during and
after the pandemic (2020 and 2022), investigating channels of impact. Three hours
of individual tutoring per week increased math performance by 0.22 SD in 2020
and 0.20 SD in 2022. Higher-dosage yielded stronger effects, while group tutoring
smaller effects. TOP enhanced students’ aspirations, socio-emotional skills and
psychological well-being, but only during school closures. We also estimate the
impact of TOP on tutors, finding an increase in empathy.
DOI: 10.3886/e228584v1
title: Data and Code for: "Apart but Connected: Online Tutoring, Cognitive Outcomes, and Soft Skills"

description: We study the Tutoring Online Program (TOP), where tutoring is entirely online
and tutors are volunteer university students, matched with underprivileged middle
school students. We leverage random assignment to estimate effects during and
after the pandemic (2020 and 2022), investigating channels of impact. Three hours
of individual tutoring per week increased math performance by 0.22 SD in 2020
and 0.20 SD in 2022. Higher-dosage yielded stronger effects, while group tutoring
smaller effects. TOP enhanced students’ aspirations, socio-emotional skills and
psychological well-being, but only during school closures. We also estimate the
impact of TOP on tutors, finding an increase in empathy.
DOI: 10.5517/ccdc.csd.cc2mkq97
title: CCDC 2430099: Experimental Crystal Structure Determination

description: Related Article: Andrei V. Zaitsev, Alina A. Markova, Minh Tuan Nguyen, Anton V. Makarenkov, Anna V. Shibaeva, Ivan D. Burtsev, Anton E. Egorov, Alexander F. Smol'yakov, Elena G. Kononova, Vladimir A. Kuzmin, Alexander A. Shtil, Valentina A. Ol'shevskaya|2025|Org.Biomol.Chem.|23|8553|doi:10.1039/d5ob01238d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mkqb8
title: CCDC 2430100: Experimental Crystal Structure Determination

description: Related Article: Andrei V. Zaitsev, Alina A. Markova, Minh Tuan Nguyen, Anton V. Makarenkov, Anna V. Shibaeva, Ivan D. Burtsev, Anton E. Egorov, Alexander F. Smol'yakov, Elena G. Kononova, Vladimir A. Kuzmin, Alexander A. Shtil, Valentina A. Ol'shevskaya|2025|Org.Biomol.Chem.|23|8553|doi:10.1039/d5ob01238d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.3455pa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaillardia pulchella",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019349-250920141307145/datasets/export for details.
DOI: 10.15468/dl.9897xr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaillardia pulchella",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019350-250920141307145/datasets/export for details.
DOI: 10.15468/dl.h3ec53
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaillardia pulchella",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019351-250920141307145/datasets/export for details.
DOI: 10.15468/dl.j2erdk
title: Occurrence Download

description: A dataset containing 10576 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Adenomera andreae, Boana faber)"
 ]
}

 The dataset includes 10576 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019353-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4suxcv
title: Occurrence Download

description: A dataset containing 27752 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Clematis alpina)"
 ]
}

 The dataset includes 27752 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019352-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59hpd3
title: Occurrence Download

description: A dataset containing 6520 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fish collection NTNU University Museum"
 ]
}

 The dataset includes 6520 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019354-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data1541
title: Replication data for: "An easy-to-use pipeline to analyze amplicon-based Next Generation Sequencing results of human mitochondrial DNA from degraded samples"

description: The dataset contains the raw data, in FastQ format, of the sequences used to optimize the script "NCR-mtDNA_ampliconbasedngs", available in the GitHub repository named "DanielRCA/NCR-mtDNA_ampliconbasedngs". The dataset includes 163 samples (15 present-day samples and 148 ancient samples from before the 20th century). For each sample, there are two FastQ files, as the sequencing was performed in a paired-end format.
DOI: 10.15468/dl.x3y2hd
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ampittia virgata",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 473 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019355-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqry7j
title: Occurrence Download

description: A dataset containing 5610 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Norwegian specimens stored in Herb. Klepsland (pre 2022)"
 ]
}

 The dataset includes 5610 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019356-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dtkuj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaillardia pulchella",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019359-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data1546
title: Replication data for "Scheduled sampling training framework for ANN-based PID control"

description: This data repository supports the ETFA24 publication titled "Scheduled Sampling Training Framework for ANN-Based PID Control," part of the E-TROTLE project. This project is funded under MCIN/AEI/10.13039 /501100011033 project TED2021-129134B-I00 co-funded with the European Union ‘‘NextGenerationEU’’/PRTR funds. ETROTLE aims to develop data-driven control systems using transfer learning and optimization methods to enhance the operation of wastewater treatment plants (WWTPs), focusing on environmental impact and sustainability. To run the ETFA24 simulations, please combine the data in this repository with the code available in the associated "ETFA24_SS" GitHub repository in https://github.com/ilChapo/ETFA24_SS
description: METHODOLOGICAL INFORMATION

1. Description of methods used for collection-generation of data: 
SIMULINK simulation jointly with our tuning functions allowed for selection of the PID parameters and obtention of the simulation vectors.

2. Instrument- or software- specific information needed to interpret the data:
We used MATLAB_2023a for the simulations and the usort2 tuning rules for the PID.

ETROTLE_Dataset_ETFA24_model_weights: Contains sample model weights in .h5 format for one iteration of the SS (Scheduled Sampling) and NS (Non-Scheduled) training simulations across all first-order processes.
ETROTLE_Dataset_ETFA24_Scalers: Includes the scalers for the ANN data inputs and outputs used in training for all first-order processes. The scaling values are based on historical data, located in ETROTLE_Dataset_MAT_files under the 1st_order directory.
ETROTLE_Dataset_MAT_files: Houses the .mat files of historical data for first-order processes, including the control actuations of all reference PIDs and the process outputs ("mesura") for each process. Inside we find the reference folder: Contains the variable setpoint signals used in all simulations.
PID_tuning_params_1stO_processes.mat: Provides the tuned parameters for all PIDs, jointly with the dynamics of 10 different first-order processes.
description: MATLAB_2023a, null
description: usort2 tuning rules, null
DOI: 10.25607/t2smha
title: Marine impactful cryptogenic and alien species in the Greek Seas: A georeferenced dataset (1893-2020)

description: The GreekMarineICAS geodataset was created as part of the project ALAS: Aliens in the Aegean – A Sea Under Siege project (https://alas.edu.gr/), with the aim to assess the spatial extent and potential impacts of alien species in the Aegean Sea, and to improve our understanding of the mechanisms driving the impacts of invasive alien species on native marine ecosystems.
Methodology of data compilation: Initially, an ICAS catalogue was created, including species classified as of high impact in the European Alien Species Information Network (EASIN), or as invasive or of high impact in recent review papers. A thorough search was conducted to look for information on the presence of these species in the Greek Seas. Georeferenced data, along with information on the reported date / year of sighting, depth range, abundance and habitat type were compiled using all available types of data sources, including published scientific literature, grey literature (e.g., theses, technical reports, and newspaper reports), offline databases (including records from past projects of universities, research institutes, the ELNAIS database, and citizen science initiatives), online scientific or citizen science databases (Algaebase, GBIF, OBIS, iNaturalist - only research-grade data), social networks (e.g., Instagram and Facebook), as well as through field work involving scientific diving and interviews with marine scientists, fishers and divers that were carried out during the ALAS project. In situ underwater sampling during the ALAS project was carried out in 2020 at 156 sites, and all sampling was conducted using non-destructive visual sampling techniques via SCUBA or free diving, down to a maximum of 20 m depth. Moreover, an unstructured interview approach was applied during the respective interviews with marine scientists, fishers and divers, while a photographic guide of the targeted ICAS was produced and provided during the interviews to enhance the species verification process. Information from social networks was specifically retrieved from the websites of diving centers, which were thoroughly checked for images of ICAS, and once relevant images were found the corresponding information was further validated through direct communication. All data were organized within an Excel spreadsheet and all duplicate records were deleted.
DOI: 10.15468/dl.4ya87p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gaillardia pulchella",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019360-250920141307145/datasets/export for details.
DOI: 10.15468/dl.qq6av6
title: Occurrence Download

description: A dataset containing 1492 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Clematis armandii)"
 ]
}

 The dataset includes 1492 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019361-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7xuds
title: Occurrence Download

description: A dataset containing 5043385 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Botany"
 ]
}

 The dataset includes 5043385 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019337-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25392/leicester.data.30217723
title: <b>Split-APEX implicates splicing factor SRSF1 and splicing helicases in ribosomal biogenesis</b>

description: Scaffold files following mass spectrometry of proteins isolated on streptavidin beads following proximity biotinylation. This was done using (1 file) full-length APEX2 fused to the N-terminus of SRSF1 and (1 file) split-APEX, with complementary portions of APEX2 fused to the N-terminus of SRSF1 and to the N-terminus of helicases involved in pre-mRNA splicing. Experiments were done in triplicate.
DOI: 10.25392/leicester.data.30217723.v1
title: <b>Split-APEX implicates splicing factor SRSF1 and splicing helicases in ribosomal biogenesis</b>

description: Scaffold files following mass spectrometry of proteins isolated on streptavidin beads following proximity biotinylation. This was done using (1 file) full-length APEX2 fused to the N-terminus of SRSF1 and (1 file) split-APEX, with complementary portions of APEX2 fused to the N-terminus of SRSF1 and to the N-terminus of helicases involved in pre-mRNA splicing. Experiments were done in triplicate.