cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc8034h
title: CCDC 238425: Experimental Crystal Structure Determination

description: Related Article: K.L.Fujdala, T.D.Tilley|2004|Chem.Mater.|16|1035|doi:10.1021/cm030563k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8035j
title: CCDC 238426: Experimental Crystal Structure Determination

description: Related Article: K.L.Fujdala, T.D.Tilley|2004|Chem.Mater.|16|1035|doi:10.1021/cm030563k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8036k
title: CCDC 238427: Experimental Crystal Structure Determination

description: Related Article: K.L.Fujdala, T.D.Tilley|2004|Chem.Mater.|16|1035|doi:10.1021/cm030563k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.30355810
title: Specimens used in phylogenetic analysis and their GenBank or UNITE accession numbers. Newly generated sequences are shown in bold.

description: We recently collected specimens of <i>Clavulina</i> on the Mediterranean island of Sardinia. Four taxa were recognized based on examination of morphological characters and the results of molecular phylogenetic analyses. In this work, we describe and illustrate <i>Clavulina ilicicola </i>as a new species. The nuclear ribosomal internal transcribed spacer (nrITS) was sequenced from dried basidiomata.
DOI: 10.6084/m9.figshare.30355810.v1
title: Specimens used in phylogenetic analysis and their GenBank or UNITE accession numbers. Newly generated sequences are shown in bold.

description: We recently collected specimens of <i>Clavulina</i> on the Mediterranean island of Sardinia. Four taxa were recognized based on examination of morphological characters and the results of molecular phylogenetic analyses. In this work, we describe and illustrate <i>Clavulina ilicicola </i>as a new species. The nuclear ribosomal internal transcribed spacer (nrITS) was sequenced from dried basidiomata.
DOI: 10.5517/cc7hl8k
title: CCDC 223518: Experimental Crystal Structure Determination

description: Related Article: D.H.Camacho, E.V.Salo, Z.Guan|2004|Org.Lett.|6|865|doi:10.1021/ol036173l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8037l
title: CCDC 238428: Experimental Crystal Structure Determination

description: Related Article: K.L.Fujdala, T.D.Tilley|2004|Chem.Mater.|16|1035|doi:10.1021/cm030563k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7hl9l
title: CCDC 223519: Experimental Crystal Structure Determination

description: Related Article: D.H.Camacho, E.V.Salo, Z.Guan|2004|Org.Lett.|6|865|doi:10.1021/ol036173l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc736cw
title: CCDC 211617: Experimental Crystal Structure Determination

description: Related Article: Tongbu Lu, Xiaomei Zhuang, Yanwu Li, Shi Chen|2004|J.Am.Chem.Soc.|126|4760|doi:10.1021/ja031874z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc804w8
title: CCDC 238479: Experimental Crystal Structure Determination

description: Related Article: M.J.Ingleson, M.F.Mahon, P.R.Raithby, A.S.Weller|2004|J.Am.Chem.Soc.|126|4784|doi:10.1021/ja049402n
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc804x9
title: CCDC 238480: Experimental Crystal Structure Determination

description: Related Article: M.J.Ingleson, M.F.Mahon, P.R.Raithby, A.S.Weller|2004|J.Am.Chem.Soc.|126|4784|doi:10.1021/ja049402n
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc804yb
title: CCDC 238481: Experimental Crystal Structure Determination

description: Related Article: N.Halland, A.Braunton, S.Bachmann, M.Marigo, K.A.Jorgensen|2004|J.Am.Chem.Soc.|126|4790|doi:10.1021/ja049231m
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc804zc
title: CCDC 238482: Experimental Crystal Structure Determination

description: Related Article: O.V.Ozerov, Chengyun Guo, V.A.Papkov, B.M.Foxman|2004|J.Am.Chem.Soc.|126|4792|doi:10.1021/ja049659l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13018/bmr15693
title: Solution structure of Human Pax8 Paired Box Domain
DOI: 10.13018/bmr15694
title: Apple Domains 1 and 2 from Toxoplasma gondii microneme protein 4
DOI: 10.13018/bmr15695
title: Solution NMR structure of the chromobox protein homolog 4
DOI: 10.13018/bmr15697
title: Mutational and Structural Analysis of Stem-loop IIId of the Hepatitis C Virus and GB Virus B Internal Ribosome Entry Sites
DOI: 10.13018/bmr15698
title: Solution Structure of the Apo C terminal domain of Lethocerus troponin C isoform F1
DOI: 10.13018/bmr15700
title: solution struture of human N-terminal domain of pirh2/Northeast Structure Genomics Consortium (NESG) target HT2A
DOI: 10.13018/bmr15701
title: solution struture of human C-terminal domain of pirh2/Northeast Structural Genomics Consortium (NESG) target HT2C
DOI: 10.13018/bmr15702
title: Solution NMR Structure of Bordatella pertussis protein BP2786, a Mth938-like domain: Northeast Structural Genomics Consortium target BeR31
DOI: 10.13018/bmr15703
title: Soluble form of human earliest activation antigen of leukocytes CD69
DOI: 10.13018/bmr15704
title: Ca2+-S100A1-RyRP12
DOI: 10.13018/bmr15705
title: Pseudo Contact shifts and RDCs of Galectin-3 with C-terminal LBT tagged at a proton frequency of 600MHz.
DOI: 10.13018/bmr15706
title: Backbone Chemical Shift Assignments for DPF inhibited Mature Subtilisin E
DOI: 10.13018/bmr15707
title: NMR solution structure of the split PH domain from Phospholipase C gamma 2
DOI: 10.13018/bmr15708
title: Structure of the N-terminal domain of the Y4 receptor in SDS and DPC micelles
DOI: 10.13018/bmr15710
title: Structural Basis of PxxDY Motif Recognition in SH3 Binding
DOI: 10.13018/bmr15711
title: Backbone chemical shift assignements for monomeric apoSOD1
DOI: 10.13018/bmr15712
title: Backbone chemical shift assignements for monomeric apoSOD1 - variant A4V
DOI: 10.13018/bmr15713
title: Backbone chemical shift assignements for monomeric apoSOD1 - variant G85R
DOI: 10.13018/bmr15714
title: Backbone chemical shift assignements for monomeric apoSOD1 - variant D90A
DOI: 10.13018/bmr15715
title: NMR Assignments of Methionine Sulfoxide Reductase B2 from Homo sapiens
DOI: 10.13018/bmr15716
title: 1H, 15N, 13C resonance assignment of the AlgE6R1 subunit from the Azotobacter vinelandii Mannuronan C5-epimerase
DOI: 10.13018/bmr15717
title: SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN IN THE RED LIGHT-ABSORBING GROUND STATE
DOI: 10.13018/bmr15718
title: Solution Structure of the inner DysF domain of human myoferlin
DOI: 10.13018/bmr15719
title: Assignment of the central region (131-28) of human h1 calponin
DOI: 10.13018/bmr15720
title: Solution structure of Arabidopsis thaliana protein At1g70830, a member of the major latex protein family
DOI: 10.13018/bmr15721
title: Solution structure of protein ATU1203 from AGROBACTERIUM TUMEFACIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) target ATT10, Ontario Center for Structural Proteomics target ATC1183
DOI: 10.13018/bmr15722
title: 1H, 13C and 15N Resonance Assignments of Ca2+ bound collagen-binding domain derived from a clostridial collagenase
DOI: 10.13018/bmr15723
title: NMR assignment of the nonstructural protein nsp3(1066-1181) from SARS-CoV
DOI: 10.13018/bmr15724
title: 3J coupling constants related to the phi-torsions in oxidised Flavodoxin from Desulfovibrio vulgaris (Hildenborough)
DOI: 10.13018/bmr15725
title: 3J coupling constants related to the chi1-torsions in oxidised Flavodoxin from Desulfovibrio vulgaris (Hildenborough)
DOI: 10.13018/bmr15726
title: Backbone 1H, 13C, and 15N Chemical Shift Assignments for La NTD
DOI: 10.13018/bmr15727
title: Full 1H, 13C, and 15N Chemical Shift Assignments for La NTD complexed with 5'UUUU RNA
DOI: 10.5281/zenodo.18758903
title: Experimental Evaluation Methodology for The Era of No Steady Performance (Artifact)

description: Recent studies of virtual machine warm up have pointed out that even small deterministic microbenchmarks executed in tightly controlled circumstances often do not reach a steady state of peak performance. This impacts performance evaluation methodologies that focus on performance after warm up, because the lack of a steady state may violate common assumptions made when computing metrics such as the average performance or the confidence interval for that average.

Our work examines the reported lack of steady state in the context of comparatively larger virtual machine workloads. We document and analyze similar lack of steady state and argue that it should be considered an inherent property of these workloads rather than a fault. We introduce an updated performance evaluation methodology for workloads whose execution exhibits segments of steady state performance separated by sudden performance changes. Using the Renaissance benchmark suite for the Java Virtual Machine, we show that the methodology can produce confidence intervals that miss the true performance over 20% less often than the existing methodologies.



The main artifact archive



long-runs-artifact.tar.gz

12GB, requires Podman or Docker

SHA256 f6c23dde7661304d3bc0230f9a618629b66c89f29624c38796aa42b3fe217fcf



Optional data for anomaly investigation



Complete archive



data-four-hour-vm-log-external.tar.gz

70GB

SHA256 247df8ec5727c5ec7b3453aaf0c5701dd06eacc3895987cc9d0b5bd082b825d6



Minimal subset



data-four-hour-vm-log-minimal.tar.gz

992KB

SHA256 eb46e57c6b33cca09309b28dcf06b485932674d8ce5a3d31d11827db8b7dc67b





Optional data for code warm up profiling



Complete archive



data-warm-up-profile-external.tar.gz

85GB

SHA256 f9fa7a79b9ecf44e30f530b614a0a8c0808a101e24618839fcdf9a6bcd2b8cd3



Minimal subset



data-warm-up-profile-minimal.tar.gz

56MB

SHA256 523fcd841a48d2945aa950bdf1ac6505ea5b2b438356b4e2082c95d732d05c23





The standalone computation library



9kB, requires R

Library README longruns_README.md

Library tarball longruns_0.0.0.tar.gz




This version of the record contains only the minimal subset of the two optional data archives.
DOI: 10.13018/bmr15728
title: NMR structures of dimeric transmembrane domain of the receptor tyrosine kinase EphA1 in lipid bicelles at pH 4.3
DOI: 10.5281/zenodo.18758902
title: Experimental Evaluation Methodology for The Era of No Steady Performance (Artifact)

description: Recent studies of virtual machine warm up have pointed out that even small deterministic microbenchmarks executed in tightly controlled circumstances often do not reach a steady state of peak performance. This impacts performance evaluation methodologies that focus on performance after warm up, because the lack of a steady state may violate common assumptions made when computing metrics such as the average performance or the confidence interval for that average.

Our work examines the reported lack of steady state in the context of comparatively larger virtual machine workloads. We document and analyze similar lack of steady state and argue that it should be considered an inherent property of these workloads rather than a fault. We introduce an updated performance evaluation methodology for workloads whose execution exhibits segments of steady state performance separated by sudden performance changes. Using the Renaissance benchmark suite for the Java Virtual Machine, we show that the methodology can produce confidence intervals that miss the true performance over 20% less often than the existing methodologies.



The main artifact archive



long-runs-artifact.tar.gz

12GB, requires Podman or Docker

SHA256 f6c23dde7661304d3bc0230f9a618629b66c89f29624c38796aa42b3fe217fcf



Optional data for anomaly investigation



Complete archive



data-four-hour-vm-log-external.tar.gz

70GB

SHA256 247df8ec5727c5ec7b3453aaf0c5701dd06eacc3895987cc9d0b5bd082b825d6



Minimal subset



data-four-hour-vm-log-minimal.tar.gz

992KB

SHA256 eb46e57c6b33cca09309b28dcf06b485932674d8ce5a3d31d11827db8b7dc67b





Optional data for code warm up profiling



Complete archive



data-warm-up-profile-external.tar.gz

85GB

SHA256 f9fa7a79b9ecf44e30f530b614a0a8c0808a101e24618839fcdf9a6bcd2b8cd3



Minimal subset



data-warm-up-profile-minimal.tar.gz

56MB

SHA256 523fcd841a48d2945aa950bdf1ac6505ea5b2b438356b4e2082c95d732d05c23





The standalone computation library



9kB, requires R

Library README longruns_README.md

Library tarball longruns_0.0.0.tar.gz




This version of the record contains only the minimal subset of the two optional data archives.
DOI: 10.13018/bmr15729
title: Solution Structure of Tick Carboxypeptidase Inhibitor at pH 3.5
DOI: 10.13018/bmr15730
title: Solution structure of the folded domain of intermediate IIIa of Tick Carboxypeptidase Inhibitor
DOI: 10.13018/bmr15731
title: Solution structure of the folded domain of intermediate IIIb of Tick Carboxypeptidase Inhibitor
DOI: 10.13018/bmr15732
title: 1H, 13C, and 15N backbone resonance assignments of the bright domain of the histone demethylase JARID 1B
DOI: 10.13018/bmr15733
title: Solution structure of Lamin B Receptor Tudor domain
DOI: 10.13018/bmr15734
title: Solution Structure of cGMP-binding GAF domain of Phosphodiesterase 5
DOI: 10.13018/bmr15735
title: truncated AcrA from Campylobacter jejuni for glycosylation studies
DOI: 10.13018/bmr15736
title: Full length human frataxin
DOI: 10.13018/bmr15737
title: Solution structure of an N-glycosylated protein using in vitro glycosylation
DOI: 10.13018/bmr15738
title: Carbon storage regulator from Helicobacter pylori
DOI: 10.13018/bmr15739
title: Hydramacin-1: Structure and antibacterial activity of a peptide from the basal metazoan Hydra
DOI: 10.13018/bmr15740
title: Structure ensemble Backbone and side-chain 1H, 13C, and 15N Chemical Shift Assignments, 1H-15N RDCs and 1H-1H nOe restraints for protein K7 from the Vaccinia virus
DOI: 10.13018/bmr15741
title: 1H, 15N and 13C resonance assignment of imidazole glycerol phosphate (IGP) synthase protein HisF from Thermotoga maritima
DOI: 10.13018/bmr15742
title: CsmA
DOI: 10.13018/bmr15743
title: Sequence specific 1H, 13C and 15N resonance assignment of Hahellin from Hahella chejuensis, a putative member of the bg-crystallin superfamily
DOI: 10.13018/bmr15744
title: Backbone assignment of lipid-free human apolipoprotein E (apoE)
DOI: 10.13018/bmr15745
title: Solution structure of stem-loop alpha; of the hepatitis B virus post-transcriptional regulatory element
DOI: 10.13018/bmr15746
title: Bpp3783_115-220
DOI: 10.13018/bmr15747
title: Structural and Functional Characterization of TM IX of the NHE1 Isoform of the Na+/H+ Exchanger
DOI: 10.13018/bmr15748
title: D,L-Peptide Foldamers: A Beta-Hairpin/Beta-Helical Structure in Methanol
DOI: 10.13018/bmr15749
title: D,L-Peptide Foldamers: A Curved Structure in PBS
DOI: 10.13018/bmr15750
title: Solution NMR structure of the folded 79 residue fragment of Lin0334 fromListeria innocua. Northeast Structural Genomics Consortium target LkR15.
DOI: 10.13018/bmr15751
title: SYNTHESIS, STRUCTURE AND ACTIVITIES OF AN ORAL MUCOSAL ALPHA-DEFENSIN FROM RHESUS MACAQUE
DOI: 10.13018/bmr15752
title: Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein
DOI: 10.15468/dl.sru9qt
title: Occurrence Download

description: A dataset containing 849636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Limosa lapponica"
 ]
}

 The dataset includes 849636 records from 668 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003043-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18783306
title: Sensitivity Analysis of the Penteract Constants Framework: Evidence Against Numerology

description: Rigorous perturbation analysis of 7 framework constants across 6 testable predictions. Key findings: (1) Only 3 of 7 constants are effective (Fisher information ranking), reducing framework from 7-parameter to 3-parameter. (2) χ_PC is most fragile — 5% change causes fatal 6σ deviation. (3) Geometric hypothesis χ_PC = θ_lock/θ_tet improves ALL predictions by 12.9%. (4) Hidden relationships discovered: sin(θ_lock) ≈ π/4 and χ_PC/γ ≈ π. Framework passes robustness test: predictions are fragile to perturbation (opposite of curve-fitting). Related predictions paper: DOI 10.5281/zenodo.18779407.
DOI: 10.5281/zenodo.18783307
title: Sensitivity Analysis of the Penteract Constants Framework: Evidence Against Numerology

description: Rigorous perturbation analysis of 7 framework constants across 6 testable predictions. Key findings: (1) Only 3 of 7 constants are effective (Fisher information ranking), reducing framework from 7-parameter to 3-parameter. (2) χ_PC is most fragile — 5% change causes fatal 6σ deviation. (3) Geometric hypothesis χ_PC = θ_lock/θ_tet improves ALL predictions by 12.9%. (4) Hidden relationships discovered: sin(θ_lock) ≈ π/4 and χ_PC/γ ≈ π. Framework passes robustness test: predictions are fragile to perturbation (opposite of curve-fitting). Related predictions paper: DOI 10.5281/zenodo.18779407.
DOI: 10.13018/bmr15753
title: Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein
DOI: 10.13018/bmr15755
title: NMR Solution structure of the C-terminal domain (T94-Y172) of the human centrin 2 in complex with a repeat sequence of human Sfi1 (R641-T660)
DOI: 10.13018/bmr15756
title: 1H, 13C and 15N backbone chemical shift assignments of the 2FNI-3FNI module pair from human fibronectin
DOI: 10.13018/bmr15757
title: 1H, 13C and 15N assignment for eosinophil cationic protein
DOI: 10.13018/bmr15758
title: 1H, 13C and 15N backbone chemical shift assignments of the 4FNI-5FNI module pair from human fibronectin
DOI: 10.13140/rg.2.2.21031.20647
title: INFRARED SPECTROSCOPY
DOI: 10.13018/bmr15759
title: 1H, 13C and 15N backbone chemical shift assignments of the 3FNIII module from human fibronectin
DOI: 10.13018/bmr15760
title: Solution structure of a cytoskeletal protein complex
DOI: 10.13018/bmr15761
title: Chemical shift assignments for JHP0511 (HP0564) from Helicobacter pylori.
DOI: 10.13018/bmr15762
title: NMR Structure of Protein yiiS from Shigella flexneri: Northeast Structural Genomics Consortium Target SfR90
DOI: 10.13018/bmr15763
title: The solution structure of human Mia40
DOI: 10.13018/bmr15764
title: Backbone 1H, 13C, and 15N Chemical Shift Assignments for Ca2+-Binding Domain 1 of the Na+/Ca2+ Exchanger in the Absence of Ca2+
DOI: 10.5281/zenodo.18783221
title: IntelliMan_WP5_Grasping, Manipulation and Arm-Hand Coordination_T5.1_Data fusion and sensing technology_IEEEICECS2024_Data

description: The dataset was collected using a wearable sensing glove while grasping 28 daily-life objects. Five subjects participated in the experiment. For each trial, a subject grasped an object for 1 second and then released it. Each subject performed 10 trials per object, resulting in 50 trials per class and 1400 total recordings (28 objects × 50 trials).

Each sample is a multichannel time series recorded at 200 Hz, with 200 time steps per trial (1 s × 200 samples/s) and 35 input channels in total, combining 5 FSR sensors and 5 IMUs (30 IMU channels). To evaluate the contribution of each sensing modality, the data were also split into two subsets: an IMU-only dataset (30 channels) and an FSR-only dataset (5 channels), enabling comparison of sensor configurations for object shape recognition.
DOI: 10.13018/bmr15765
title: Solution Structure of a Tetrahaem Cytochrome from Shewanella Frigidimarina