cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24158918
title: Differences in <i>δ</i><sup>13</sup>C and <i>δ</i><sup>15</sup>N values for monarch butterflies raised on milkweeds from within and outside of crop fields: implications for inferences about natal origins

description: Stable isotope (<i>δ</i><sup>2</sup>H, <i>δ</i><sup>13</sup>C) measurements of wing tissue have been used to determine the natal geographic origin of migrant monarch butterflies that overwinter in Mexico. This study examines the possibility of using <i>δ</i><sup>13</sup>C and <i>δ</i><sup>15</sup>N to identify the milkweed habitat used by monarchs in their natal region. Milkweeds were common in corn and soybean fields before herbicide use led to their extirpation around 2006, and the loss of those milkweeds has been proposed as a reason for the monarch population decline. If crop-field monarchs can be identified, then historical samples of monarchs could be examined to test that hypothesis. The <i>δ</i><sup>15</sup>N and <i>δ</i><sup>13</sup>C values of leaves from milkweeds growing in corn fields, soybean fields and non-agricultural habitats were examined as well as monarchs that were raised on those leaves. There were no <i>δ</i><sup>15</sup>N values for leaves or monarchs that were distinctive for crop fields. Milkweeds in corn fields, and monarchs that were raised on those milkweeds, were found to have <i>δ</i><sup>13</sup>C values distinctly lower than those of other habitats and unlike those of locations within the summer breeding range. Thus, it should be possible to identify monarchs that came from cornfields in samples of overwintering monarchs made before ca. 2006.
DOI: 10.6084/m9.figshare.24158918.v1
title: Differences in <i>δ</i><sup>13</sup>C and <i>δ</i><sup>15</sup>N values for monarch butterflies raised on milkweeds from within and outside of crop fields: implications for inferences about natal origins

description: Stable isotope (<i>δ</i><sup>2</sup>H, <i>δ</i><sup>13</sup>C) measurements of wing tissue have been used to determine the natal geographic origin of migrant monarch butterflies that overwinter in Mexico. This study examines the possibility of using <i>δ</i><sup>13</sup>C and <i>δ</i><sup>15</sup>N to identify the milkweed habitat used by monarchs in their natal region. Milkweeds were common in corn and soybean fields before herbicide use led to their extirpation around 2006, and the loss of those milkweeds has been proposed as a reason for the monarch population decline. If crop-field monarchs can be identified, then historical samples of monarchs could be examined to test that hypothesis. The <i>δ</i><sup>15</sup>N and <i>δ</i><sup>13</sup>C values of leaves from milkweeds growing in corn fields, soybean fields and non-agricultural habitats were examined as well as monarchs that were raised on those leaves. There were no <i>δ</i><sup>15</sup>N values for leaves or monarchs that were distinctive for crop fields. Milkweeds in corn fields, and monarchs that were raised on those milkweeds, were found to have <i>δ</i><sup>13</sup>C values distinctly lower than those of other habitats and unlike those of locations within the summer breeding range. Thus, it should be possible to identify monarchs that came from cornfields in samples of overwintering monarchs made before ca. 2006.
DOI: 10.6084/m9.figshare.24160723.v1
title: Measurement of plasma protein and whole body protein metabolism using [<sup>15</sup>N]glycine in a young adult man – a pilot study

description: A novel simplified method is presented for the estimation of the metabolism of plasma proteins (albumin, fibrinogen, <i>α</i>, <i>β</i> and <i>γ</i>-globulin, glycoprotein) with regard to the whole body protein metabolism in a young male volunteer (22 years, 81 kg body mass). This method is based on multiple oral administration of [<sup>15</sup>N]glycine followed by measurement of <sup>15</sup>N in plasma proteins, total free amino acids, urea and excreted urinary N. The fractional synthesis rate of albumin was estimated to 6.8 % d<sup>−1</sup> based on amino acids and 3.3 % d<sup>−1</sup> based on urea, respectively. The fractional synthesis rate of the other plasma proteins ranged from 4.3 % d<sup>−1</sup> (<i>γ</i>-globulin) to 26.4 % d<sup>−1</sup> (<i>α</i>-globulin, fibrinogen). We conclude that the simplified approach using [<sup>15</sup>N]glycine provides results which are similar to results based on the simultaneously applied <sup>131</sup>I-human serum albumin technique as ‘gold standard’ and to those reported in literature. The compartmental analysis considering comprehensive tracer kinetic data ensures reliable data treatment and enables statistical evaluation. The analytical effort is minimal because the <sup>15</sup>N enrichment of plasma protein after chemical digestion may be directly used. Therefore, the novel stable isotope <sup>15</sup>N method is suitable for studies in clinical and nutritional research and practice.
DOI: 10.6084/m9.figshare.24160723
title: Measurement of plasma protein and whole body protein metabolism using [<sup>15</sup>N]glycine in a young adult man – a pilot study

description: A novel simplified method is presented for the estimation of the metabolism of plasma proteins (albumin, fibrinogen, <i>α</i>, <i>β</i> and <i>γ</i>-globulin, glycoprotein) with regard to the whole body protein metabolism in a young male volunteer (22 years, 81 kg body mass). This method is based on multiple oral administration of [<sup>15</sup>N]glycine followed by measurement of <sup>15</sup>N in plasma proteins, total free amino acids, urea and excreted urinary N. The fractional synthesis rate of albumin was estimated to 6.8 % d<sup>−1</sup> based on amino acids and 3.3 % d<sup>−1</sup> based on urea, respectively. The fractional synthesis rate of the other plasma proteins ranged from 4.3 % d<sup>−1</sup> (<i>γ</i>-globulin) to 26.4 % d<sup>−1</sup> (<i>α</i>-globulin, fibrinogen). We conclude that the simplified approach using [<sup>15</sup>N]glycine provides results which are similar to results based on the simultaneously applied <sup>131</sup>I-human serum albumin technique as ‘gold standard’ and to those reported in literature. The compartmental analysis considering comprehensive tracer kinetic data ensures reliable data treatment and enables statistical evaluation. The analytical effort is minimal because the <sup>15</sup>N enrichment of plasma protein after chemical digestion may be directly used. Therefore, the novel stable isotope <sup>15</sup>N method is suitable for studies in clinical and nutritional research and practice.
DOI: 10.5281/zenodo.10369295
title: The final acceleration of MAD station

description: The final acceleration of MAD station.
DOI: 10.5281/zenodo.10369296
title: The final acceleration of MAD station

description: The final acceleration of MAD station.
DOI: 10.5281/zenodo.8199764
title: Observational data from 22 stations during the Lushan earthquake

description: Observational data from 22 stations during the Lushan earthquake.  The file includes observation data from 22 stations of the main earthquake of the Lushan earthquake, including small earthquake waveform data from 6 stations. The latitude and longitude of 22 stations.
DOI: 10.5281/zenodo.8199765
title: Observational data from 22 stations during the Lushan earthquake

description: Observational data from 22 stations during the Lushan earthquake.  The file includes observation data from 22 stations of the main earthquake of the Lushan earthquake, including small earthquake waveform data from 6 stations. The latitude and longitude of 22 stations.
DOI: 10.34944/dspace/9221
title: Traumatic Bereavement and Healing Meta-Synthesis Search Strategy

description: To identify studies to include or consider for this meta-synthesis, the review team worked with a librarian (TN) to develop detailed search strategies for each database. The PRISMA-S extension was followed for search reporting. The librarian (TN) developed the search for [database] and translated the search for every database searched. The [database] search strategy was reviewed by the research team to check for accuracy and term relevancy. All final searches were peer-reviewed by another librarian (Jacob Brintzenhoff) following the Peer Review of Electronic Search Strategies (PRESS checklist). The search was limited by date from 1990-01-01 to 2023-10-23 (date of final search) The PubMed search used a Qualitative Research hedge, modified from Schoonade LJ. (1) and is available at https://blocks.bmi-online.nl/catalog/293.
description: The databases included in this search are PubMed (NLM), PsycInfo (EbscoHost), CINAHL (EbscoHost), Academic Search Complete (Ebscohost), and Web of Science (Clarivate Analytics) using a combination of keywords and subject headings. A grey literature search included TRIP Pro medical database (tripdatabase.com) website and BioPreprint (https://www.hsls.pitt.edu/). The search was limited to adults, qualitative studies, and publication date1990-01-01 to 2023-10-23 (date of last search). All final searches were performed on October 23, 2023 by the librarian and were fully reported on October 25, 2023. The full search strategies as reported by the librarian are provided in Appendix(___). They are also archived at [DOI]. A summary of the search results from databases: PubMed (NLM) from inception to 10/23/2023 (1,223 Results) PsycInfo (EbscoHost) from inception to 6/2/2022 (1,225 Results) CINAHL (EbscoHost) from inception to 6/2/2022 (502 Results) Academic Search Complete (EbscoHost) from inception to 6/2/2022 (1,306 Results) Web of Science (Clarivate Analytics) from inception to 6/2/2022 (728 Results) The search resulted in 5,071 studies and 2,048 duplicate studies were found and omitted by the librarian using EndNote 20 and following the Wichor M. Bramer deduplication identification strategy available at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915647/. This resulted in 3,017 records to screen from databases or registers and 6 records to screen from other methods, resulting in a total of 3,023 records. Studies were screened by title and abstract by two blinded and independent reviewers. If a tiebreaker was needed, a third reviewer was called in. This process was repeated for full text article screening and article selection. Reference:  Schoonmade LJ. 2020. Qualitative Research Hedge. https://blocks.bmi-online.nl/catalog/293
DOI: 10.34944/dspace/9222
title: Pelvic Floor Muscle Training Systematic Review Search Strategy

description: To identify studies to include or consider for this systematic review, the review team worked with a health sciences librarian (TN) to develop detailed search strategies for each database. The PRISMA-S extension was followed for search reporting. The librarian (TN) developed the search for PubMed (NLM) and translated the search strategy for every database searched. The PubMed (NLM) search strategy was reviewed by the research team to check for accuracy and term relevancy, and all final searches were peer-reviewed by another librarian following the Peer Review of Electronic Search Strategies (PRESS checklist).
DOI: 10.5281/zenodo.10369317
title: TopasOpt: Simple Collimator Example Files

description: Files required to run the TopasOpt examples, as described here:
https://image-x-institute.github.io/TopasOpt/
DOI: 10.5281/zenodo.10369316
title: TopasOpt: Simple Collimator Example Files

description: Files required to run the TopasOpt examples, as described here:
https://image-x-institute.github.io/TopasOpt/
DOI: 10.5281/zenodo.10369337
title: Data: On the role of water table depth, and urban and vegetation cover on groundwater dry period susceptibility
DOI: 10.5281/zenodo.10369338
title: Data: On the role of water table depth, and urban and vegetation cover on groundwater dry period susceptibility
DOI: 10.5281/zenodo.10369249
title: DeepGO-SE protein function prediction model data

description: Data for training and running DeepGO-SE protein function prediction model
DOI: 10.5281/zenodo.10369248
title: DeepGO-SE protein function prediction model data

description: Data for training and running DeepGO-SE protein function prediction model
DOI: 10.34740/kaggle/dsv/7189544
title: Dataset for Study Diabetic Retinopathy
DOI: 10.34740/kaggle/dsv/6939472
title: Diamond Images Dataset
DOI: 10.6084/m9.figshare.20367882
title: Fish Trade Dataset

description: This dataset relates to the book <em>Ireland’s Sea Fisheries, 1400-1600: Economics, Environment and Ecology</em>, for more information on how it was generated, see Appendix 2 of that volume. The data was collected from a variety of sources to study Ireland’s export of fish in the late medieval and early modern periods. The data is focused on the fifteenth and sixteenth centuries but contains data for the seventeenth century as well. The data presented here was initially part of a relational database constructed in Microsoft Access but has since been extracted and is presented here as a single spreadsheet. For more information on sources and explanations for the column headings, please read the introduction document upload here.
DOI: 10.6084/m9.figshare.20367882.v4
title: Fish Trade Dataset

description: This dataset relates to the book <em>Ireland’s Sea Fisheries, 1400-1600: Economics, Environment and Ecology</em>, for more information on how it was generated, see Appendix 2 of that volume. The data was collected from a variety of sources to study Ireland’s export of fish in the late medieval and early modern periods. The data is focused on the fifteenth and sixteenth centuries but contains data for the seventeenth century as well. The data presented here was initially part of a relational database constructed in Microsoft Access but has since been extracted and is presented here as a single spreadsheet. For more information on sources and explanations for the column headings, please read the introduction document upload here.
DOI: 10.6084/m9.figshare.20367882.v3
title: Fish Trade Dataset

description: This dataset relates to the book <em>Ireland’s Sea Fisheries, 1400-1600: Economics, Environment and Ecology</em>, for more information on how it was generated, see Appendix 2 of that volume. The data was collected from a variety of sources to study Ireland’s export of fish in the late medieval and early modern periods. The data is focused on the fifteenth and sixteenth centuries but contains data for the seventeenth century as well. The data presented here was initially part of a relational database constructed in Microsoft Access but has since been extracted and is presented here as a single spreadsheet. For more information on sources and explanations for the column headings, please read the introduction document upload here.
DOI: 10.6084/m9.figshare.24785607
title: Target Programs and Properties

description: Target Programs and Properties: object follwer, brobot, elevator simulator (elev), and sv-comp 2022.
DOI: 10.15151/esrf-es-1388133596
title: Preparation for LS-3260: testing the 3D imaging protocols and sample mounting

description: We will conduct microtomography scanning of mock-up samples for LS-3260. We will not conduct any in-situ experiments. We will be working on optimising protocols, and testing different sample mounting as to verify the contrast possibilities that will facilitate the experiments scheduled in February.
DOI: 10.15151/esrf-es-1398661508
title: Zn complexation with SARS-CoV2 Orf8

description: Zn complexation with SARS-CoV2 Orf8
DOI: 10.15151/esrf-es-1369844917
title: Surface X-ray Diffraction for Characterization of Model Ru Catalyst Surfaces

description: We propose studying model interfaces between metal catalysts and polymers with high-energy surface X-ray diffraction (HESXRD) to better understand the structural motifs occurring at an interface critical in efforts to chemically recycle plastic. Our results will significantly improve the atomic level understanding of the catalyst interface, in particular the catalyst surface reconstruction and the arrangement and coordination of various hydrocarbon chain lengths as a function of environment. For polymer hydrogenolysis chain length has been shown to impact reactivity and selectivity toward desired liquid products. Understanding the structure of the catalysts surface and the hydrocarbon chains near the catalyst interface is of utmost importance. Comparing our structural results to simulations from molecular dynamics (MD) and density functional theory (DFT) will allow us a deepen our insight into the adsorbed structure of polymers under reactive conditions.
DOI: 10.15151/esrf-es-1428120317
title: Dynamics of water in nanoconfinement

description: We continue our investigations of water dynamics inside nanochannels made of silica
DOI: 10.6084/m9.figshare.24798456
title: MDAD（微生物药物数据库）

description: MDAD（微生物药物数据库）
DOI: 10.5281/zenodo.10254079
title: Mechano-sensitive super-enhancers regulate genes linked to atherosclerosis in vascular endothelial cells

description: Supplemental Table S1-2 of the manuscript in submission
DOI: 10.5281/zenodo.7392201
title: Integrating multi-omics to identify mechano-sensitive super-enhancers in vascular endothelial cells

description: Supplementary table 1-8 of the manuscript in submission
DOI: 10.5281/zenodo.10369403
title: Mechano-sensitive super-enhancers govern atherosclerosis-linked genes in vascular endothelial cells

description: Supplemental Table S1-2 of the manuscript in submission
DOI: 10.5281/zenodo.7379010
title: Mechano-sensitive super-enhancers govern atherosclerosis-linked genes in vascular endothelial cells

description: Supplemental Table S1-2 of the manuscript in submission
DOI: 10.5281/zenodo.7379011
title: Integrating multi-omics to identify mechano-sensitive super-enhancers in vascular endothelial cells

description: Supplementary table 1-8 of the manuscript in submission
DOI: 10.5281/zenodo.8378554
title: Free Open Source Communities Sustainability: Does It Make a Difference in Software Quality?

description: Free and Open Source Software (FOSS) communities' sustainability is important to maintain and promote access to technology and innovation. While considerable effort has been invested on the topic of FOSS sustainability, limited attention has been given to its impact on community outcomes, e.g., software quality. We conducted an empirical study to examine the influence of FOSS sustainability on software quality. We used projects' data sourced from the Apache Software Foundation Incubator. A total of 236 projects were originally selected. Our final list included a total of 217 projects after applying our exclusion criteria. We used Bayesian data analysis, which incorporates probability distributions to represent the regression coefficients and intercepts. Our findings suggest that our selected sustainability metrics do not significantly affect defect density or code coverage. However, we observed a positive impact of community age on specific code quality metrics, such as risk complexity, number of very large files, and code duplication percentage. Interestingly, our findings show that even when communities are experiencing sustainability, certain code quality metrics are negatively impacted. This implies that code quality practices are not consistently linked to sustainability, and defect management and prevention may be prioritized over the former.
DOI: 10.5281/zenodo.8378553
title: Free Open Source Communities Sustainability: Does It Make a Difference in Software Quality?

description:  Free and Open Source Software (FOSS) communities' sustainability is important to maintain and promote access to technology and innovation. While considerable effort has been invested on the topic of FOSS sustainability, limited attention has been given to its impact on community outcomes, e.g., software quality. We conducted an empirical study to examine the influence of FOSS sustainability on software quality. We used projects' data sourced from the Apache Software Foundation Incubator. A total of 236 projects were originally selected. Our final list included a total of 217 projects after applying our exclusion criteria. We used Bayesian data analysis, which incorporates probability distributions to represent the regression coefficients and intercepts. Our findings suggest that our selected sustainability metrics do not significantly affect defect density or code coverage. However, we observed a positive impact of community age on specific code quality metrics, such as risk complexity, number of very large files, and code duplication percentage. Interestingly, our findings show that even when communities are experiencing sustainability, certain code quality metrics are negatively impacted. This implies that code quality practices are not consistently linked to sustainability, and defect management and prevention may be prioritized over the former.
DOI: 10.5281/zenodo.8383454
title: Free Open Source Communities Sustainability: Does It Make a Difference in Software Quality?

description:  Free and Open Source Software (FOSS) communities' sustainability is important to maintain and promote access to technology and innovation. While considerable effort has been invested on the topic of FOSS sustainability, limited attention has been given to its impact on community outcomes, e.g., software quality. We conducted an empirical study to examine the influence of FOSS sustainability on software quality. We used projects' data sourced from the Apache Software Foundation Incubator. A total of 236 projects were originally selected. Our final list included a total of 217 projects after applying our exclusion criteria. We used Bayesian data analysis, which incorporates probability distributions to represent the regression coefficients and intercepts. Our findings suggest that our selected sustainability metrics do not significantly affect defect density or code coverage. However, we observed a positive impact of community age on specific code quality metrics, such as risk complexity, number of very large files, and code duplication percentage. Interestingly, our findings show that even when communities are experiencing sustainability, certain code quality metrics are negatively impacted. This implies that code quality practices are not consistently linked to sustainability, and defect management and prevention may be prioritized over the former.
DOI: 10.5281/zenodo.10369423
title: ınsidental parathyroidectomy
DOI: 10.5281/zenodo.10369422
title: ınsidental parathyroidectomy
DOI: 10.6084/m9.figshare.24798345
title: Additional file 5 Table S1.pdf

description: Table S1. Records of the birthdates and litter sizes of the mice.
DOI: 10.6084/m9.figshare.24798345.v1
title: Additional file 5 Table S1.pdf

description: Table S1. Records of the birthdates and litter sizes of the mice.
DOI: 10.6084/m9.figshare.24798360.v1
title: Additional file 6 Table S2.pdf

description: Table S2. Records of the water and feed intake of the mice.
DOI: 10.6084/m9.figshare.24798360
title: Additional file 6 Table S2.pdf

description: Table S2. Records of the water and feed intake of the mice.
DOI: 10.4121/2a5313eb-bce4-47ab-b757-1e3435a84506
title: Matlab files used to produce the figures in the publication: On the Derivation of Closed-Form Expressions for Displacements, Strains and Stresses Inside Poroelastic Reservoirs

description: MATLAB code to recreate figures from the paper:<br><em>Cornelissen, P., Meulenbroek, B.J., Jansen, J.D., (2023). On the Derivation of Closed-Form Expressions for Displacements, Strains and Stresses Inside Poroelastic Reservoirs. Submitted to JGR Solid Earth.</em><br>The MATLAB scripts are used to compute the analytical solution for the poroelastic strain and stress field for rectangular and triangular reservoirs. The analytical solutions have been derived using inclusion theory (Equations 40-42 and 45-47 of the associated manuscript). The purpose of these scripts is to verify the analytical solutions by computing the strain discontinuity across the inclusion boundary and computing the volumetric strain in and outside the inclusion, and to show an example of an application of inclusion theory to reservoir depletion. These scripts produce Figures 5, 6, and 9 of the associated manuscript.<br><br><br>