cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23592312.v1
title: Supplementary Material for: Evaluation of C4 gene copy number in Pediatric Acute Neuropsychiatric Syndrome

description: Pediatric Acute-onset Neuropsychiatric Syndrome (PANS) is an abrupt-onset neuropsychiatric disorder. PANS patients have an increased prevalence of co-morbid autoimmune illness, most commonly arthritis. In addition, an estimated one-third of PANS patients present with low serum C4 protein, suggesting decreased production or increased consumption of C4 protein. To test the possibility that copy number (CN) variation contributes to risk of PANS illness, we compared mean total C4A and total C4B CN in ethnically-matched subjects from PANS DNA samples and controls (192 cases and 182 controls). Longitudinal data from the Stanford PANS cohort (n = 121) was used to assess whether the time to Juvenile Idiopathic Arthritis (JIA) or Autoimmune Disease (AI) onset was a function of total C4A or C4B. Lastly, we performed several hypothesis-generating analyses to explore the correlation between individual C4 gene variants, sex, specific genotypes and age of PANS onset. Although the mean total C4A or C4B CN did not differ in PANS compared to controls, PANS patients with low C4B CN were at increased risk for subsequent JIA diagnosis (Hazard Ratio = 27, p-value = 0004). We also observed a possible increase in risk for AI in PANS patients and a possible correlation between lower C4B and PANS age of onset. An association between rheumatoid arthritis and low C4B CN has been reported previously. However, patients with PANS develop different types of JIA: enthesitis-related arthritis, spondyloarthritis and psoriatic arthritis. This suggests that C4B plays a role that spans these arthritis types.
DOI: 10.6084/m9.figshare.28428953.v1
title: Supplementary Material for: Deep learning and radiomics for gastric cancer lymph node metastasis: Automated segmentation and multi-machine learning study from two centers

description: Objective: The objective of this study is to develop an automated method for segmenting spleen computed tomography (CT) images using a deep learning model. This approach is intended to address the limitations of manual segmentation, which is known to be susceptible to inter-observer variability. Subsequently, a prediction model of gastric cancer (GC) lymph node metastasis was constructed in conjunction with radiomics and deep learning features, and a nomogram was generated to explore the clinical guiding significance.
Methods: This study enrolled 284 patients with pathologically confirmed GC from two centers. we employed a deep learning model, U-Mamba, to obtain fully automatic segmentation of the spleen CT images. Subsequently, radiomics features and deep learning features were extracted from the entire spleen CT images, and significant features were identified through dimensionality reduction. The clinical features, radiomic features, and deep learning features were organized and integrated, and five machine learning methods were employed to develop 15 predictive models. Ultimately, the model exhibiting superior performance was presented in the form of a nomogram. 
Results: A total of 12 radiomics features, 17 deep learning features, and 2 clinical features were deemed valuable. The DRC model demonstrated superior discriminative capacity relative to other models. A nomogram was constructed based on the logistic clinical model to facilitate the usage and verification of the clinical model.
Conclusion: Radiomics and deep learning features derived from automated spleen segmentation to construct a nomogram demonstrate efficacy in predicting LNM in GC. Concurrently, fully automated segmentation provides a novel and reproducible approach for radiomics research.
DOI: 10.6084/m9.figshare.20031017.v1
title: ASL-Sensor-Dataglove-Dataset.zip

description: Hardware The primary hardware is a data glove consisting of three units, namely sensing, processing, and onboard power regulation unit. The sensing unit is comprised of five 2.2" flex sensors (SEN-10264) and an IMU (MPU-6050) which has a triaxial accelerometer and a triaxial gyroscope. Dataset <strong>Overview. </strong>We explored 40 signs from the standard ASL dictionary that including 26 letters and 14 words. Among these signs, 24 require only a certain finger flexion and no hand motion; hence, are addressed as static signs or gestures. Conversely, the remaining 16 signs need hand motion alongside the finger flexion to portray meaningful expression according to the ASL dictionary. Moreover, we collected the signs from 25 subjects (19 Male and 6 Female) in separate data recording sessions with a consistent protocol. Overall, three channels for acceleration in both body and earth axis, three for angular velocity, four for quaternion, and five for flex sensors were recorded in the dataset. The data was recorded by the data glove processing unit which was connected to a laptop for data storage via USB. The sampling frequency is set to 100 Hz and each gesture was repeated 10 times to record the performance variabilities of each subject. However, during a few sessions denoted in the dataset supplementary information, the laptop charger was connected which resulted in AC-induced noise all over those specific recorded data. <br> <strong>Data recording protocol.</strong> Before starting the recording process, each subject signed an approval form for the usage of their data in this research and was briefed about the data recording steps. As the subjects were not familiar with the signs before the study, they were taught each sign before the data recording via online video materials. The data was recorded by the data glove and stored on the laptop at the same time. Hence, a Python script was used on the laptop to make the handshake between the two devices and to store the data in separate folders as per the signs and the subjects. At the beginning of each data recording session, the subjects were prompted to declare their subject id and the gesture name. Afterward, a five-second countdown is prompted on the laptop screen for preparation. Each instance of the gesture data is recorded for a 1.5 seconds window and the subjects can easily perform their gesture once within that window. In a single gesture recording session, this process is repeated 10 times. <br>
DOI: 10.6084/m9.figshare.11702421.v1
title: SoilC_CO2

description: Data and R code for a meta-analysis and upscaling approach to synthesize data from CO2 experiments on the effect of elevated CO2 on soil carbon<br>
DOI: 10.6084/m9.figshare.25470169.v1
title: Supplementary Material for: Type I interferon, induced by adenovirus or adenoviral vector infection, regulates the cytokine response to LPS in a macrophage type-specific manner

description: In mice, adenovirus (Ad)-elicited IFN-ab mediates the overproduction of LPS stimulated cytokines such as TNFa and IL-6. We found that Ad infection also mediates the overproduction of IFN-ab itself and enables its production in splenic marginal zone macrophages, which don’t produce IFN-ab in response to LPS alone. We show the importance of the scavenger receptor MARCO for Ad uptake and cytokine overproduction in vivo, and the differential contribution of infection and rIFN-b to LPS-induced cytokine response in macrophage subsets. TNF-a and IL-6 responses are enhanced in alveolar macrophages and alveolar macrophage-like lines, but downregulated in bone-marrow-derived and peritoneal macrophages, which correlates with the absence and presence of the anti-inflammatory IL-10 response. The IFN-ab response to LPS is enhanced in all four macrophage types. In Ad-infected mice, the rough LPS chemotype-induced TNF-a production partially depends on the LPS co-receptor CD14, while the IL-10 response is independent of CD14. The IFN-ab responses are strictly CD14-dependent, and partly IRF-3-independent. Upregulated TNF-a and IL-6, and downregulated IL-10 responses to LPS were also found in human blood treated ex vivo with SARS-CoV-2 adenovirus vaccine or rIFN-b. The altered reactivity of cytokine-producing cells to the ubiquitously present LPS could promote adverse effects of viral infection or vaccination.
DOI: 10.6084/m9.figshare.c.3607466_d8.v1
title: Additional file 8: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: Phenotype mean and standard deviation for F2_F and F2_L and the T-test p-value for both daily gain and retroperitoneal fat. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.28335020.v1
title: Cuestionario Inicial "El valor de la empatía a través de la expresión plástica: una propuesta de carácter interdisciplinar en el Grado en Maestro/a en Educación Infantil" (Proyecto innovación docente 24-25/25-26).

description: datos de cuestionario de evaluación inicial con el alumnado
DOI: 10.6084/m9.figshare.25012286.v1
title: <b>Bumblebees socially learn behaviours too complex to innovate</b><b> alone : </b>two-step<b> </b>puzzle box data

description: Raw data included in the manuscript "<b>Bumblebees socially learn behaviours too </b><b>complex to </b><b>innovate</b><b> alone</b>" (previously published as a preprint "<b>Social learning of a challenging two-step action sequence fulfils </b><b>key</b><b> criteria of cumulative culture in an insect</b>"; <b>d</b><b>oi:</b> https://doi.org/10.1101/2023.08.29.555358).Dataset includes the raw data for the dyad experiments as two csv files (one showing the overall data for each dyad, one showing data for each joint foraging session for every dyad) and a further five csv files containing the data underlying the figures presented in the manuscript. Details of both can be found below.<b>RAW DATA</b>Contained in two csv files compiling all data obtained during the dyad experiments: one showing the overall data for each dyad, one showing data on following behaviour for each joint foraging session for every dyad.Full methodological details are available in the manuscript. <b>Overall data</b>For each dyad, the following information is provided:DemoID, demonstrator ID; ObsID, observer ID.Class: determined by a combination of demonstrator technique preference and observer learning test outcome. Dyads fell into one of three categories: "squeezing-pass", "squeezing-fail" and "staggered-fail". No. of sessions: number of joint foraging sessions undergone by the dyad.DemoOpenIncidence: the number of times the demonstrator opened a two-step box during the joint foraging sessionsDemoIndex: DemoOpenIncidence / No. of sessions, allowing comparisons between dyads that ran for different lengths of time.SoloForage OpenIncidence: the number of times an observer opened a two-step box during the post-learning test solo foraging sessions.OfWhich"Squeezing": the number of times the observer used the "squeezing" technique to open a two-step box during the post-learning test solo foraging sessions. FollowTotal: the total duration of observer "following" behaviour during the joint foraging sessions, in seconds.FollowIndex: Following / no. of sessions, allowing comparisons between dyads that ran for different lengths of time.<b>Raw following data</b>For each joint foraging session for each dyad, the following information is provided:Session: joint foraging session number.FollowingDur: the duration of "following" behaviour in that joint foraging session.ObsID: Observer ID; DemoID, Demonstrator IDClass: determined by a combination of demonstrator technique preference and observer learning test outcome. Dyads fell into one of three categories: "squeezing-pass", "squeezing-fail" and "staggered-fail". <b>FIGURE DATA</b>A total of 5 csv files show the data underlying the following figure panels: Fig. 2A, 2B and 2C, and the following supplementary figure panels: Fig. S1A-C, S2, and S4. Figure legends in the main paper detail their contents.<br><br><br><br>
DOI: 10.6084/m9.figshare.28735559.v1
title: Study for effects of Role and Goal.xlsx

description: There are two data, “Previous Study for Scene Setting” and “Study for effects of Role and Goal.”<br><b>“</b><b>Previous Study for Scene Setting” </b>is data collected to cmpare the degree of envy felt in the context of privious research (Tado'oka et al., 2016) and the revised version. For the variable name “scene”, data 1 = the context of privious research, and data 2 = revised version.<br><br><b>“Study fo effects of Role and Goal</b><b>” </b>is data collected to clarify the conditions that alleviate envy. When you try to analyze in the same way as this paper, you need to select data that satisfies the condition “Goal-checkOK = 1 & Role-checkOK = 1.”<br>For the variable name “IV1_Goal-condition”, data 1 = groupcentric, and data 2 = egocentric goal. For the variable name “IV2_Role-condition”, data 1 = with role, and data 2 = without role.<br>
DOI: 10.6084/m9.figshare.9724157.v2
title: Raw data: Sensitiviy and Specificity of Commercially Available Rapid Diagnostic Tests for Viral Hepatitis B and C Screening in Serum Samples

description: 19 different rapid diagnostic tests, 9 for Hepatitis B surface antigen and 9 for Hepatitis C antibody, were prospectively tested on 270 participants. Details of the respective study will be published in a peer-reviewed journal.<br>
DOI: 10.6084/m9.figshare.12955019.v3
title: QM datasets for pericyclic reactions

description: Three pericyclic reaction datasets at M06-2X/def2-SVP level of theory obtained via active learning loops described in Ang, Shi Jun; Wang, Wujie; Schwalbe-Koda, Daniel; Axelrod, Simon; Gomez-Bombarelli, Rafael (2020): Active Learning Accelerates Ab Initio Molecular Dynamics on Pericyclic Reactive Energy Surfaces. ChemRxiv. Preprint. https://doi.org/10.26434/chemrxiv.11910948.v2.<br>These datasets consist of coordinates, their associated energies and gradients.<br><br>(i) Claisen rearrangement of allyl vinyl ether (14976 datapoints)(ii) Diels-Alder reaction between acrylaldehyde and cis-butadiene (7927 datapoints)(iii) Trispericyclic reaction between 8,8-dicyanoheptafulvene and 6,6-dimethylfulvene (31397 datapoints) (Ref. Xue, X.-S., Jamieson, C.S., Garcia-Borràs, M., Dong, X., Yang, Z., and Houk, K.N. (2019). Ambimodal Trispericyclic Transition State and Dynamic Control of Periselectivity. J. Am. Chem. Soc. <i>141</i>, 1217–1221.)
DOI: 10.6084/m9.figshare.7891223.v1
title: Change of the tumor size.xlsx

description: Supporting file 1: Summary of the surgically treated cases.<br>Supporting file 2: Chenge of the tumor size from initial presentation
DOI: 10.6084/m9.figshare.8796899.v1
title: Word2vec Convolutional Neural Networks for Classification of News Articles and Tweets

description: This data is intended to reproduce the performance evaluation of the word2vec CNN classification model.<br>It consists of news+CBOW, news+Skipgram, news+random vector, Twitter+CBOW, Twitter+Skipgram, Twitter+random vector.<br>Each file contains values of acuracy, determination, recall, f1 score, and training volume is 4K for the random vector and 10K for the rest.<br><br>
DOI: 10.6084/m9.figshare.3600504.v3
title: Public data archiving of our Marine Biology study: Do the abundance and diversity of fishes vary with the size and the type of coral?

description: R script used for our analysis during our marine study. Learn more about our project on our site, the link to it is written below.
DOI: 10.6084/m9.figshare.12514172.v1
title: R-Code and data for "Directional turnover toward larger-ranged plants over time and across habitats"

description: This project includes (1) an html file ("cross-habitat-comparison.html") containing the R code for statistical analyses and data visualization (double-click the downloaded file for viewing), and (2) the data ("cross-habitat-data.csv") to reproduce the analyses. Metadata explaining the data structure can be found in the first section of the html file.
DOI: 10.6084/m9.figshare.22178210.v1
title: Supplementary Material for: Coping Patterns in Advanced Old Age: Findings from the Fordham Centenarian Study

description: Introduction. Research on coping in advanced old age is scarce. In the present study, we explored coping patterns in near-centenarians and centenarians, and characteristics associated to using a specific coping pattern. Methods. We analyzed the frequency with which participants (N=87, MAge = 99.05; SDage = 2.6; age range 95-107) reported using specific coping strategies (i.e., coping strategy use) and the relative preference for specific strategies (i.e., relative coping preferences) in data from the Fordham Centenarian Study. Moreover, we applied cluster analysis to detect coping patterns, and we compared cluster characteristics. Results. Very old individuals reported using emotion control and acceptance the most. Cluster analysis further revealed two distinct groups: The high coping group reported significantly higher coping strategy use than the low coping group (p &lt; .001). The two groups also favored different strategies (p &lt; .001), with the high coping group showing significantly higher relative preferences than the low coping group for active problem-solving, proactive prevention, and strategic planning (all ps &lt; .05). The groups furthermore differed significantly in psychological strengths (i.e., personality, self-efficacy, ps &lt; .001) and well-being outcomes (i.e., life satisfaction, p = .05). Discussion. This study provides evidence for a general preference for acceptance and emotion control, supporting theories of a developmental coping shift in old age, yet our findings also document the existence of groups with different coping patterns. More frequent coping use, and particularly continued use of active problem-solving and proactive prevention, may enable well-being in very old age.
DOI: 10.6084/m9.figshare.12278684.v5
title: ChinaET1km10days: an improved high resolution dataset on terrestrial evapotranspiration across China during 2000-2018

description: We integrate five process-based ET models using machine learning methods to produce ChinaET1km10days. The related manuscripts titled "Improving terrestrial evapotranspiration estimation across China during 2000-2018 with machine learning methods" is under review. The data in distinct Geotiff file are named as ‘GPR_yy_dd_ET.tif’, where ‘yy’ and ‘dd’ denote year, order. The order is from 1 to 36. There are 3 issues per month. Assuming there are N days in a month, the unit of the first 2 issues is mm/10day, and the unit of the third issue is mm/(N-20) day. The scale factor is 0.01.
DOI: 10.6084/m9.figshare.19469663.v1
title: Termos com tratamento - qualidade dos títulos

description: Lista de termos com tratamento extraído do corpus de documentos
DOI: 10.6084/m9.figshare.3563778.v1
title: Supplement 1. Coordinates for sampled municipalities and the dates of tap water sample collection.

description: File List Coordinates.txt Description The Coordinates.txt file is a tab-separated file. It contains the city, state, latitude, and longitude of sampled municipalities as well as the month and year of tap water collection.
DOI: 10.6084/m9.figshare.5808408.v1
title: Figure 7c.xlsx

description: Data for Figure 7c.
DOI: 10.6084/m9.figshare.4750801.v1
title: Supplementary Material for: Prospective Evaluation of a Prenatal Sonographic Clubfoot Classification System

description: <strong><em>Background:</em></strong> The purpose of this study was to prospectively evaluate our recently described fetal sonographic classification system for prenatal diagnosis of clubfoot. <b><i>Methods:</i></b> Over 18 months, we prospectively enrolled consecutive pregnant patients evaluated for a prenatally diagnosed clubfoot. Prenatal sonographic scores assigned by a radiologist were compared to final clinical diagnosis and severity given by a pediatric orthopedic surgeon. Pearson's χ<sup>2</sup> test and logistic regression were used in statistical analyses on the subject level. Generalized estimating equations were used in analyses on the foot level to account for intrasubject correlation. <b><i>Results:</i></b> There were 50 subjects, with 26 unilateral and 24 bilateral clubfeet, according to the prenatal ultrasound (US). A total of 51 (69%) of 74 feet and 36 (72%) of 50 subjects had a postnatal diagnosis of clubfoot. The accuracy of diagnosis in cases of a severe, moderate, and mild US score was 94, 70, and 25%, respectively (p = 0.003 comparing moderate-severe vs. mild). US severity correlated with the Dimeglio classification scoring system (Spearman's correlation 0.30). <b><i>Conclusion:</i></b> The fetal sonographic scoring system is predictive of clinical severity after birth, and improves the ability to counsel families with a prenatal diagnosis of clubfoot.
DOI: 10.6084/m9.figshare.797484.v1
title: Mechanistic and chiroptical studies on the desulfurization of epidithiodioxopiperazines reveal universal retention of configuration at the bridgehead carbon atoms.

description: The stereochemistry of the desulfurization products of chiral natural and synthetic 3,6-epidithiodiketopiperazines (ETPs) is specified inconsistently in the literature. Qualitative mechanisms have been put forward to explain apparently divergent stereochemical pathways, however the quantitative feasibility of such mechanistic pathways has not been assessed. We report a computational study which reveals that desulfurization of ETPs should occur universally with retention of configuration. While the majority of stereochemically assigned and reassigned cases fit this model, until now desulfurization of a synthetic gliotoxin analogue (7) has remained assigned as proceeding via inversion of configuration. Through detailed chiroptical studies, comparing experimentally obtained optical rotation values, electronic circular dichroism spectra, and vibrational circular dichroism spectra to their computationally simulated counterparts, as well as using chemical derivatization studies, we have unambiguously demonstrated that, contrary to its current assignment in the literature, the desulfurization of a synthetic ETP (7) also proceeds with retention of configuration.
DOI: 10.6084/m9.figshare.8025326.v1
title: Supplementary Material for: Characterization of Initial Stages of Diabetic Macular Edema

description: <b><i>Purpose:</i></b> This study is aimed at characterizing the type of retinal edema in the initial stages of retinopathy in type 2 diabetes. <b><i>Methods:</i></b> In this retrospective cross-sectional study, spectral domain optical coherence tomography (OCT) layer by layer analysis of the retina in association with OCT-Leakage, an algorithm to detect sites of low optical reflectivity, were used to examine eyes with minimal, mild, and moderate diabetic retinopathy (DR). <b><i>Results:</i></b> A total of 142 eyes from 142 patients (28% women) aged 52–88 years were imaged. Macular edema, either subclinical (SCME) or central-involved macular edema (CIME), was present in 43% of eyes in group 10–20, 41% of eyes in group 35, and 38% of eyes in group 43–47. The inner nuclear layer (INL) was the layer showing higher and most frequent increases in retinal thickness (79%). The edema was predominantly intracellular in group 10–20 (65%) and extracellular in groups 35 (77%) and 43–47 (69%). <b><i>Conclusions:</i></b> Eyes from diabetic patients in the initial stages of DR with different Early Treatment Diabetic Retinopathy Study gradings show similar prevalence of SCME and CIME, independent of the severity of the retinopathy. Retinal edema is located mainly in the INL and appears to be mostly extracellular except in the earliest stages of diabetic retinal disease where intracellular edema predominates.