cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wmsbzv6kg5
title: CLAP

description: Companion datasets for "Denaturing purifications demonstrate that PRC2 and other widely-reported chromatin proteins do not appear to bind directly to RNA in vivo". The following data are organized by folders, in the Figures that they appear. Tables containing various column metrics of CLIP and CLAP experiments (enrichment value, p-value, expression levels, and number of reads) for each detected 100-nucleotide RNA window. Tables labeled "PlusTag" or "MinusTag" indicate experiments in which a Halo-tagged protein was transfected into a human cell line (PlusTag, +tag) mixed with untransfected mouse cells or transfected into mouse cells and mixed with untransfected human cells (MinusTag, -tag); windows were computed over all annotated human RNAs. "Halo-" or "Spy-" prefixes are designated for proteins in which both HaloCLAP and SpyCLAP were performed (i.e., performed on either Halo-tagged or Spy-tagged proteins, respectively.) Unless otherwise noted, all other experiments were performed with HaloCLAP. Full-length gel images of scanned phosphor screens are provided for all CLIP and CLAP-related experiments involving radiolabeling of RNA-protein complexes by 32P (Phosphorus-32).
DOI: 10.6084/m9.figshare.28771409.v1
title: EC3_paper.pdf

description: In this research, we utilise the capabilities of LLMs to parse the IFC data with Graph Retrieval-Augmented Generation (Graph-RAG) technique to retrieve building object properties and their relations. We will show that, despite limitations due to the complex hierarchy of the IFC data, the Graph-RAG parsing enhances generative LLMs like GPT-4o with graph-based knowledge, enabling natural language query-response retrieval without the need for a complex pipeline.
DOI: 10.17632/3b9bb9vsn8
title: Trichomonads in BALFs

description: "Trichomonads in BALFs" is a gallery of micrographs.
Micrographs of amoeboid trichomonads found in bronchoalveolar lavages are presented.
They will help cytopathologists or parasitologists to familiarize themselves with this deceptive amoeboid appearance observed in deep locations
Pictures can be visualized on computer (MS-Edge, Chrome, Firefox etc.) or on smartphone (under Android only; no iOS version).

Contact: christophe.duboucher@trichomoniasis-pathology.org
DOI: 10.17632/8zhhjhyt35
title: AutoNaVIT-C : Vision-Based Path and Obstacle Segmentation Dataset for Autonomous Driving - XML Compatible

description: AutoNaVIT is a meticulously developed dataset designed to accelerate research in autonomous navigation, semantic scene understanding, and object segmentation through deep learning. This release includes only the annotation labels in XML format, aligned with high-resolution frames extracted from a controlled driving sequence at Vellore Institute of Technology – Chennai Campus (VIT-C). The corresponding images will be included in Version 2 of the dataset.

Class Annotations
The dataset features carefully annotated bounding boxes for the following three essential classes relevant to real-time navigation and path planning in autonomous vehicles:

Kerb – 1,377 instances

Obstacle – 258 instances

Path – 532 instances

All annotations were produced using Roboflow with human-verified precision, ensuring consistent, high-quality data that supports robust model development for urban and semi-urban scenarios.

Data Capture Specifications
The source video was captured using a Sony IMX890 sensor, under stable daylight lighting. Below are the capture parameters:

Sensor Size: 1/1.56", 50 MP

Lens: 6P optical configuration

Aperture: ƒ/1.8

Focal Length: 24mm equivalent

Pixel Size: 1.0 µm

Features: Optical Image Stabilization (OIS), PDAF autofocus

Video Duration: 4 minutes 11 seconds

Frame Rate: 2 FPS

Total Annotated Frames: 504

Format Compatibility and Model Support
AutoNaVIT annotations are provided in Pascal VOC-compatible XML format, making them directly usable with models that support the Pascal VOC standard. The dataset is immediately compatible with:

Pascal VOC

As XML is a structured, extensible format, these annotations can be easily adapted for use with additional object detection frameworks that support XML-based label schemas.

Benchmark Results
To assess dataset utility, a YOLOv8 segmentation model was trained on the full dataset (including images). The model achieved the following results:

Mean Average Precision (mAP): 96.5%

Precision: 92.2%

Recall: 94.4%

These metrics demonstrate the dataset’s effectiveness in training models for autonomous vehicle perception and obstacle detection.

Disclaimer and Attribution Requirement
By downloading or using this dataset, users agree to the terms outlined in the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND 4.0):

This dataset is available solely for academic and non-commercial research purposes.

Proper attribution must be provided as follows:
“Dataset courtesy of Vellore Institute of Technology – Chennai Campus.”
This citation must appear in all research papers, presentations, or any work derived from this dataset.

Redistribution, public hosting, commercial use, or modification is prohibited without prior written permission from VIT-C.

Use of this dataset implies acceptance of these terms. All rights not explicitly granted are retained by VIT-C.
DOI: 10.17632/p3z6y7j2mh
title: Data for: CO2 Sequestration in Cement-Bonded Fiberboards through Carbonation Curing

description: the attached files provide raw data for the CO2 uptake, XRD analysis and thermal analysis.
DOI: 10.17632/3d8stynsb4
title: Journal of Methodology of Social Sciences and Humanities; No.118

description: Study of the relationship between philosophy, philosophy of social sciences and humanities, methodology and research method; 
 The role of philosophy and methodology of social sciences and humanities in the quantitative and qualitative improvement of the social sciences and humanities;
 Comparative study of philosophy and methodology of social sciences and humanities and natural sciences;
 Study of the evolution of philosophy and methodology of social sciences and humanities;
 Comparative examination of quantitative and qualitative research methods;
 Philosophical analysis of concepts used in the social sciences and humanities;
 The study of the philosophical and theological foundations of the production of religious and indigenous social sciences and humanities;
 Methodology of the production of religious and indigenous social sciences and humanities;
 Methodology of using religious texts in social sciences and humanities and social sciences;
 Methodology of Muslim scholars in social studies;
 The deficiencies of the social sciences and humanities in the field of goals, foundations, methods and achievements;
 Philosophical and methodological assessment of studies in the field of humanities and social sciences;
 Philosophical and methodological assessment of studies in the field of Islamic humanities and social sciences;
 Philosophical and methodological assessment of macro policies of the country in the scientific, economic, political, social and cultural fields

To let individual researchers and libraries have access to the most recent research findings in the field, the journal allows open-access to its articles.
DOI: 10.17632/ww6b5n327m
title: Mendeley supplemental table I. ICD-10 diagnosis codes for defining baseline comorbidities

description: Mendeley supplemental table I. for "The risk of COVID-19 infection in patients with atopic dermatitis - a retrospective cohort study"
DOI: 10.6084/m9.figshare.26319070.v1
title: Supplementary Material for: A non-interventional, multicenter study to characterize the socio-demographics, clinical characteristics, and management of Generalized Pustular Psoriasis (GPP) patients in Spain: IMPULSE study

description: Background: Generalized pustular psoriasis (GPP) is a chronic, rare, and potentially life-threatening skin condition characterized by flares comprising widespread sterile pustules and systemic inflammation. Both the rarity and heterogeneity of the disease have made GPP classification and standardization of clinical criteria challenging. Before the approval of spesolimab (IL-36R antibody) in 2022 there were no approved treatments in the USA or Europe for GPP flares. Treatment for GPP has amounted to off-label use of medicines approved to treat plaque psoriasis. 
Our aim was to describe the socio-demographics, clinical characteristics, and treatment patterns of patients with GPP in Spain.
Methods: Non-interventional, descriptive, multi-center, retrospective chart review of patients diagnosed with GPP in Spain. 
Results: 56 patients (50% women) were included, with a mean (SD) age at diagnosis of 53.7 (20.5) and a mean (SD) time of follow-up of 3.7 (3.1) years. In 80% of patients, GPP diagnosis was associated with a flare and 67.3% had known risk factors for GPP [such as previous diagnosis or family history of plaque psoriasis, comorbidities, smoking or stress. Hypertension and plaque psoriasis were the most frequent comorbidities (44.6% each). The number of GPP flares per patient-year was 0.55 with (range 0-4) a mean (SD) body surface area involvement of 21.3% (19.1). The most frequent manifestations of GPP flares were pustules (88.5%), erythema (76.9%) and scaling (76.9%). Additionally, 65.4% of patients had plaque psoriasis, 53.8% had unspecified skin lesions, and 30.8% experienced pain. The treatments used for GPP flares were off-label conventional systemic drugs (75%), mostly corticosteroids, cyclosporine and acitretin. In the periods between flares, off-label biologics were used in 56.5% of patients. During the study period, 9 patients (16.1%) had at least one complication, and 5 of them required hospitalization.
Conclusion: This is the first multi-center study in Spanish GPP patients. Most patients were in their fifties, with personal or family history of plaque psoriasis, stress, smoking and a wide range of comorbidities and complications. Even though the number of flares per patient/year was 0.55, there was variability between patients. Both off-label conventional systemics and off-label biologics were used for flare management without a clear treatment pattern.
DOI: 10.17632/8d6s67bgcw
title: Neutrosophic-Grey Analytic Hierarchy Process (NG-AHP) data and analysis

description: The available data, and analysis pertain to the article titled "A hybrid neutrosophic-grey analytic hierarchy process method: decision-making modelling in uncertain environments". The proposed NG-AHP method is applied in agility evaluations in the Iranian steel industry. Five agility evaluation criteria are considered as assessment criteria, and are applied to four steel companies. Based on the data collected from the six experts or decision makers (DMs), the aim is to find out the most significant agility criteria. Then, the steel companies are ranked in terms of agility readiness criteria. Four steel manufacturing companies are explored in this study, and their names are anonymised as SC1, SC2, SC3, and SC4. Thus, the decision problem involves four alternatives (SC1, SC2, SC3, and SC4), and five criteria (C1, C2, C3, C4, C5). The descriptions of provided files are as follows: 1. The grey-AHP (G-AHP) method application steps using the proposed rating scale is demonstrated in the provided MS Excel file (i.e.G-AHP Computations.xlsx). 2. The neutrosophic-AHP (N-AHP) method application steps using the proposed rating scale is demonstrated in the provided MS Excel file (i.e.N-AHP Computations.xlsx). 3. The aggregated NG-AHP, final weights calculations, and ranking are illustrated in the provided MS Excel file (i.e.NG-AHP Computations.xlsx). 4. The aggregation computations by Trapezoidal Neutrosophic Weighted Arithmetic Averaging (TNWAA) is shown in the provided MS Excel file.
DOI: 10.17632/gz6trjhdcr
title: Portfolio Optimization of Generic Energy Storage-based Virtual Power Plant under Decision-dependent Uncertainties

description: Decision-dependent uncertainties (DDUs) are generally overlooked in power system operations, which will result in over-greedy decisions.
Market price and wind power scenarios are generated from Nord Pool price data and Inner Mongolia wind farm over one year, representative scenarios reduced via K-means clustering
The dataset contains key parameters of GES and its DIUs.
DOI: 10.6084/m9.figshare.9936929.v3
title: Assessment of cerebral autoregulation indices

description: This study used artificial data from 34 traumatic brain injury patients to study the relationship between various methodologies for cerebral autoregulation (CA) assessment: autoregulation index, ARI, mean flow index, Mx and frequency domain - based method transfer function analysis, TF. <br>
DOI: 10.6084/m9.figshare.3554163.v1
title: Appendix A. Derivation of dλ.

description: Derivation of dλ.
DOI: 10.6084/m9.figshare.13488875.v1
title: 6lu7-2.pdb from Computational analysis of dynamic allostery and control in the SARS-CoV-2 main protease

description: The COVID-19 pandemic caused by the novel coronavirus SARS-CoV-2 has no publicly-available vaccine or antiviral drugs at the time of writing. An attractive coronavirus drug target is the main protease (M<sup>pro</sup>, also known as 3CL<sup>pro</sup>) because of its vital role in the viral cycle. A significant body of work has been focused on finding inhibitors which bind and block the active site of the main protease, but little has been done to address potential non-competitive inhibition, targeting regions other than the active site, partly because the fundamental biophysics of such allosteric control is still poorly understood. In this work, we construct an Elastic Network Model (ENM) of the SARS-CoV-2 M<sup>pro</sup> homodimer protein and analyse its dynamics and thermodynamics. We found a rich and heterogeneous dynamical structure, including allosterically correlated motions between the homodimeric protease's active sites. Exhaustive 1-point and 2-point mutation scans of the ENM and their effect on fluctuation free energies confirm previously experimentally identified bioactive residues, but also suggest several new candidate regions that are distant from the active site, yet control the protease function. Our results suggest new dynamically driven control regions as possible candidates for non-competitive inhibiting binding sites in the protease, which may assist the development of current fragment-based binding screens. The results also provide new insights into the active biophysical research field of protein fluctuation allostery and its underpinning dynamical structure.
DOI: 10.6084/m9.figshare.25125673.v1
title: The first hadrosaurid trackway from the horseshoe canyon formation (campanian/maastrichtian) of Alberta, Canada

description: The Horseshoe Canyon Formation has provided a wealth of vertebrate skeletal fossils over the past 100 years of collection. Vertebrate trace fossils such as footprints and trackways, however, have been markedly underrepresented. Trackways can provide a wealth of information regarding behaviour and soft tissues reflective of autopodial anatomy. Discovery of several giant, high-fidelity ichnites in series from the Morrin Member represents the first definitive dinosaur trackway reported from the Horseshoe Canyon Formation. The trackway is composed of three footprint casts in series, alongside 22 associated ichnites. The ichnites were formed in soft sediment molds along a non-uniform walking surface. The deep substrates allowed for the preservation of both the plantar surface and dorsal components of the trackmakers’ feet. Some ichnites show soft tissue morphologies like interdigital webbing, toe pads, and skin impressions. Presence of these features and small kidney-shaped forelimb prints allow referral to <i>Hadrosauropodus langstoni</i>. The preservation of the trackway demonstrates asymmetries useful for comparison of the relief and impression surfaces of prints using both discrete and morphometric characteristics, improving confidence in identifying partial or isolated <i>Hadrosauropodus</i> prints of various modes of formation.
DOI: 10.17632/9j27wfdpyt
title: Jet Grout Dataset

description: This dataset includes compilation of jet grout dataset from published case histories and is utilized in the development of a Bayesian deep learning model for the prediction of jet grout diameter.
DOI: 10.6084/m9.figshare.3568731.v1
title: Appendix A. A map illustrating location of 39 stream fragments and 448 fish community samples included in analysis of fish community structure across the Great Plains.

description: A map illustrating location of 39 stream fragments and 448 fish community samples included in analysis of fish community structure across the Great Plains.
DOI: 10.6084/m9.figshare.5127982.v1
title: Supplementary Material for: Early Evolution of Human Respiratory Syncytial Virus ON1 Strains: Analysis of the Diversity in the C-Terminal Hypervariable Region of Glycoprotein Gene within the First 3.5 Years since Their Detection

description: <b><i>Objective:</i></b> Characterization of the phylogeny and diversity of human respiratory syncytial virus (HRSV) genotype ON1 that occurred during its early evolution (within the first 3.5 years since the detection of the first ON1 strains). ON1 strains have a 72-nucleotide-long in-frame duplication within the second hypervariable domain of the glycoprotein gene (HVR2). <b><i>Methods:</i></b> All available HVR2 sequences of strains belonging to the ON1 genotype published prior to June 20, 2014 were collected. Multiple sequence alignments, phylogeny, phylogeography, sequence clustering and putative protein analyses were performed. <b><i>Results:</i></b> The worldwide spread and diversification of ON1 strains are presented. Only in a minority of ON1 strains do the two replicas remain identical, and various ON1 strains possess common differences between the first and the second copy (segments A and B). Mutations of the progenitor sequence were more frequent in segment B, a higher overall diversity on the protein level and more putative glycosylation sites exist in segment B, and, unlike in segment A, positive selection acts on that protein region. <b><i>Conclusions:</i></b> The fast spread of the novel HRSV genotype ON1 has been accompanied by its rapid concurrent diversification. Differences in variability of the two replicas within HVR2 were detected, with C-terminal replica being more variable.
DOI: 10.17632/fkp3nn4tp7
title: bearing and gearbox data for fault diagnostics application

description: An integrated experiment is designed for assessing the effectiveness of applying three different levels of transfer learning into fault diagnostics, and the source codes and original dataset are uploaded here for open-public accessing. Thus the obtained results can be set as the benchmark for assessing the following new transfer learning variant algorithms in fault diagnostics field.
DOI: 10.17632/g4sdvf57mx
title: Data for: Validation of a simplified analysis for the simulation of delamination of CFRP composite laminated materials under pure mode I

description: This code allows for the simulation of delamnination or debonding of DCB specimens. It is based on the macro-element technique.
DOI: 10.17632/ngtbrr7smn
title: Data for: Characterization of PM2.5-bound polycyclic aromatic hydrocarbons and their derivatives (nitro-and oxy-PAHs) emissions from two ship engines under different operating conditions

description: Data for: Characterization of PM2.5-bound polycyclic aromatic hydrocarbons and their derivatives (nitro-and oxy-PAHs) emissions from two ship engines under different operating conditions
DOI: 10.6084/m9.figshare.3546822.v1
title: Appendix D. Individual species climate-change projections.

description: Individual species climate-change projections.
DOI: 10.17632/mgbhhmr3dd
title: Global Trends in Atopic Dermatitis Burden

description: Supplemental material for "The Global Burden of Atopic Dermatitis in Children and Adolescents, and Projections to 2036: Findings from the Global Burden of Disease Study, 1990-2021"
DOI: 10.17632/tm8bt526hw
title: Beverage challenge study with natural glycolipids

description: Commercially available lemon iced tea ('still beverage') and sparkling water containing grapefruit juice ('carbonated beverage') were inoculated with three groups of spoilage microorganisms. Three species were co-inoculated for each group. Only one group of microorganisms was inoculated in a sample.  The inoculum for each species had a final concentration of 100 CFU/mL in the beverage.  The still beverage had 6 treatments: negative control, 250 ppm sodium benzoate (SB250), 10 ppm natural glycolipids (NG10), 15 ppm natural glycolipids (NG15), 10 ppm natural glycolipids + 90 ppm dimethyldicarbonate (NG10VE90) and 5 ppm natural glycolipids + 238 ppm dimethyldicarbonate (NG5VE238). The carbonated beverage had 4 treatments: negative control, SB250, 5 ppm natural glycolipids (NG5) and NG15. Beverage samples were maintained for 12 weeks at ambient temperature. The sample from each treatment was enumerated biweekly. The microbial count was recorded as CFU/mL. For data visualization and statistical analysis, the data was log (base 10) transformed. A sample was considered spoiled when its plate count reached 1 million CFU/mL (equivalent to 6 log CFU/mL). This study was conducted using biological triplicates. Geometric mean and standard deviation of plate counts can be found in this data set. The data showed that the natural glycolipids could effectively inhibit the growth of spoilage yeasts and lactic acid bacteria in the beverages. The natural glycolipids was not lethal to filamentous molds.
DOI: 10.17632/wwnb9x9xdx
title: Data for: A New Fracture Model of Reservoir Ice Layer in Northeast Cold Region of China
DOI: 10.6084/m9.figshare.22087286.v1
title: Research data for paper: Why petals? Naïve, but not experienced bees, preferentially visit flowers with larger visual signals dataset

description: Dataset for paper published in Insects (2023). <br> Abstract: Flower evolution includes a range of questions concerning the function of showy morphological features such as petals. Despite extensive research on the role of petals in attracting pollinators, there has been little experimental testing of their importance in attracting naïve versus experienced flower-visitors. In an exploratory field study, we manipulated the ray petals of inflorescences of two garden flowers, <em>Rudbeckia hirta</em> and <em>Helenium autumnale, </em>to test the hypothesis that these showy structures primarily function to attract first-time, naïve, visitors. On their first inflorescence visit to both species, naïve honey bees and bumble bees were more likely to visit intact inflorescences, than those with ray petals removed. However, by the tenth consecutive inflorescence on the same visit to the flower patch, test insects showed no preference. A positive correlation was observed between the visitation of inflorescences with zero petals and inflorescence number on both study plants, for both bees. These results suggest that a key function of showy petals is to attract naïve, first-time visitors. Like a restaurant attracting diners with a large sign, showy signals may be vital to enticing first-time visitors when competing with other establishments or plants for customers or pollinators. We hope the findings of this exploratory study will stimulate further work in this area.
DOI: 10.6084/m9.figshare.27600606.v3
title: genome and annotation of <b><i>Macrobrachium hainanense</i></b>

description: <b>A chromosome-level genome assembly</b><b> of </b><b><i>Macrobrachium hainanense</i></b>