cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26049703.v5
title: Supporting data for: "Giant transposons promote strain heterogeneity in a major fungal pathogen"

description: Fungal infections are difficult to prevent and treat in large part due to heterogeneity in clinically relevant phenotypes. However, the genetic mechanisms driving pathogen variation remain poorly understood. Here, we determined the extent to which <i>Starships</i>—giant transposons capable of mobilizing numerous fungal genes—generate genetic and phenotypic variability in the human pathogen <i>Aspergillus fumigatus</i>. We analyzed 519 diverse strains, including 12 newly sequenced with long-read technology, to reveal 20 distinct <i>Starships </i>that generate genomic heterogeneity over timescales impacting experimental reproducibility. <i>Starship</i>-mobilized genes encode diverse functions, including biofilm-related virulence factors and biosynthetic gene clusters, and many are differentially expressed during infection and antifungal exposure in a strain-specific manner. These findings support a new model of fungal pathogenesis wherein <i>Starships </i>mediate variation in virulence-related gene content and expression. Together, our results demonstrate that <i>Starships </i>are a foundational mechanism generating disease-relevant genotypic and, in turn, phenotypic heterogeneity in a major human fungal pathogen.
DOI: 10.15468/dl.tb6xfm
title: Occurrence Download

description: A dataset containing 2609 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alopias vulpinus (Bonnaterre, 1788)"
 ]
}

 The dataset includes 2609 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001165-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/serc.28271426
title: Precipitation chemistry at the Smithsonian Environmental Research Center, Maryland, USA 1981-2022

description: This dataset includes event and weekly precipitation depth and chemistry for samples collected at the Smithsonian Environmental Research Center, Edgewater, Maryland, USA from 1981 to 2022.
DOI: 10.25573/serc.28271426.v1
title: Precipitation chemistry at the Smithsonian Environmental Research Center, Maryland, USA 1981-2022

description: This dataset includes event and weekly precipitation depth and chemistry for samples collected at the Smithsonian Environmental Research Center, Edgewater, Maryland, USA from 1981 to 2022.
DOI: 10.15468/dl.7zbzky
title: Occurrence Download

description: A dataset listing the 18405 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herbarium Hamburgense"
 ]
}

 The dataset's 18405 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001153-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bsapwy
title: Occurrence Download

description: A dataset listing the 23 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galeocerdo Müller & Henle, 1837"
 ]
}

 The dataset's 23 records were derived from 246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001152-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pxqyk
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "TaxonKey is Alopias vulpinus (Bonnaterre, 1788)"
 ]
}

 The dataset's 1 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001154-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywracq
title: Occurrence Download

description: A dataset listing the 1798 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is IND.16_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 1798 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001156-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/bd737ca3b0216fce964f53275d6c5306
title: North Temperate Lakes LTER: Pelagic Prey - Sonar Data 2001 - current

description: Total pelagic fish abundance data were collected annually in mid-summer (following stratification) using hydroacoustic surveys along a set of transects in each of eight lakes (Allequash, Big Muskellunge, Crystal, Sparkling, Trout, Mendota, Monona, and Fish), from 1981-1999 (Lakes Monona and Fish from 1995). Hydroacoustic data were not collected in 2000, but collection resumed in 2001 on Crystal, Sparkling, and Trout and continues to the present (with the exception of Crystal in 2004). In 2005, Lake Mendota was included in the annual sampling rotation. This dataset includes data from lakes Crystal, Sparkling, Trout and Mendota from 2001 through present. Lake Mendota was not surveyed in 2020 due to COVID-19. Big Muskellunge lake was included back into the sampling rotation in 2020 and will now be surveyed annually.
 
 These data represent 1) species-specific whole lake density estimates and average length (target strength (dB)); 2) depth-stratified (1m) species-specific density estimates and average length by 200m transects; and 3) individual depth-specific target length (not assigned to species).
 Dataset names for the aforementioned are below.
 1) North Temperate Lakes LTER: Pelagic Prey Whole Lake Density - Sonar Data
 2) North Temperate Lakes LTER: Pelagic Prey Interval Density - Sonar Data
 3) North Temperate Lakes LTER: Pelagic Prey Single Target - Sonar Data
 
 Although rare, large targets representing predatory species were excluded from the density estimation for pelagic prey species (when n&lt;3 were caught in vertical gillnets) using the proportion of large targets identified during single target analysis on each lake. Pelagic fish densities for lakes Sparkling, Crystal, Big Muskellunge, and Mendota are for the entire basin of each lake. The data shown for Trout Lake represent densities in the south basin only. Number of current sites: 5
DOI: 10.15468/dl.gfyyxj
title: Occurrence Download

description: A dataset containing 52199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 52199 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001168-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53jr7w
title: Occurrence Download

description: A dataset containing 2239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Meles meles (Linnaeus, 1758)"
 ]
}

 The dataset includes 2239 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001170-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mjj82
title: Occurrence Download

description: A dataset containing 2952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Machine Observation)",
 "Country is India",
 "GadmGid is IND.36_1",
 "TaxonKey is Pavo cristatus Linnaeus, 1758",
 "Year 1985-2025"
 ]
}

 The dataset includes 2952 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001171-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a28r7h
title: Occurrence Download

description: A dataset containing 13178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Machine Observation)",
 "Country is India",
 "GadmGid is IND.32_1",
 "TaxonKey is Pavo cristatus Linnaeus, 1758",
 "Year 1985-2025"
 ]
}

 The dataset includes 13178 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001174-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21430/m3vjbrjtm2
title: Site-specific development and progressive maturation of human tissue-resident memory T cells over infancy and childhood

description: Infancy and childhood are critical life stages for generating immune memory to protect against pathogens; however, the timing, location, and pathways for memory development in humans remain elusive. Here, we investigated T cells in mucosal sites, lymphoid tissues, and blood from 96 pediatric donors aged 0-10 years using phenotypic, functional, and transcriptomic profiling. Our results revealed that memory T cells preferentially localized in the intestines and lungs during infancy and accumulated more rapidly in mucosal sites compared with blood and lymphoid organs, consistent with site-specific antigen exposure. Early life mucosal memory T cells exhibit distinct functional capacities and stem-like transcriptional profiles. In later childhood, they progressively adopt proinflammatory functions and tissue-resident signatures, coincident with increased T cell receptor (TCR) clonal expansion in mucosal and lymphoid sites. Together, our findings identify staged development of memory T cells targeted to tissues during the formative years, informing how we might promote and monitor immunity in children.
DOI: 10.21430/m3kdu43lza
title: Mouse Study 102: Effect of RP-1 Microemulsion on Survival After PBI-BM6mm Irradiation with Thick Lead Restrainer Insert

description: Survival data of animals exposed to 16Gy Partial Body irradiation with bone marrow shielding that were either treated with vehicle or RP-1 microemulsion formulation.
DOI: 10.21430/m3e6u41nw0
title: Enhanced placental antibody transfer efficiency with longer interval between maternal respiratory syncytial virus vaccination and birth

description: We conducted a prospective cohort study at 2 academic medical centers between September 20, 2023 and March 21, 2024. Individuals who received the respiratory syncytial virus (RSV) vaccine were enrolled. Maternal and cord blood samples (dyads) were collected at delivery, and capillary blood samples were obtained from a subset of infants at 2 months of age. The study examined how gestational age at vaccination and the time elapsed from vaccination to delivery impacted the transfer of maternal antibodies to the fetus, measured in umbilical cord blood, and their persistence in infants peripheral blood at 2 months of age.
DOI: 10.21430/m36ay0iio6
title: A surrogate ELISA to select high titer human convalescent plasma for treating immunocompromised patients infected with SARS-CoV-2 variants of concern

description: Here, the authors review a surrogate ELISA to select COVID-19 convalescent plasma samples that will guarantee a protective level of neutralizing antibodies as the main correlate of protection.
DOI: 10.48612/msupe/xkra-prf3-35uu
title: Directional motion sensitivity in people with Visual Snow Syndrome is modulated by the presence of trailing-type palinopsia

description: Using a spatial suppression paradigm, we assessed motion duration discrimination thresholds for small (1°), medium (2.5°), and large (12°) high-contrast gratings in 23 VSS and 27 control participants. Spatial Suppression Index (SSI) quantified size-dependent increases in duration thresholds. Visual Discomfort Questionnaire scores and VSS symptom ratings including TTP, afterimages, photophobia, etc. were also collected.

VSS patients reported higher visual discomfort and perceptual disturbances. However, no group differences were found in duration thresholds or SSI. Notably, higher TTP scores were associated with lower duration thresholds, indicating a facilitatory effect of TTP on motion sensitivity.
DOI: 10.21430/m33ksa5pm2
title: Patient Experiences Navigating Care Coordination For Long COVID: A Qualitative Study

description: To understand the experiences of patients as they navigate care for long COVID.
DOI: 10.21430/m3axdhdc1c
title: COVID-19 vaccination induces distinct T-cell responses in pediatric solid organ transplant recipients and immunocompetent children

description: To investigate whether the COVID-19 mRNA vaccine responses are limited in pediatric SOTRs (pSOTRs) compared to immunocompetent children.
DOI: 10.21430/m30hdwuo6z
title: High Frequency of Prior Severe Acute Respiratory Syndrome Coronavirus 2 Infection by Sensitive Nucleocapsid Assays

description: To evaluate whether Simoa serology assay and T-cell intracellular cytokine staining assay are more sensitive than the clinical Elecsys assay in the detection of nucleocapsid-specific immune responses.
DOI: 10.21430/m3k931z9b7
title: Majority of human circulating IgG plasmablasts stop blasting in a cell-free pro-survival culture

description: To evaluate cell division with simultaneous functional IgG secretion using a novel optofluidic technology.
DOI: 10.21430/m3wlkau6dk
title: Emergency Myelopoiesis Distinguishes Multisystem Inflammatory Syndrome in Children From Pediatric Severe Coronavirus Disease 2019

description: To identify mechanisms of critical illness distinguishing Multisystem inflammatory syndrome (MIS-C) in children from severe acute coronavirus disease 2019.
DOI: 10.15468/dl.v8zq6f
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphyrna mokarran (Rüppell, 1837)"
 ]
}

 The dataset's 3 records were derived from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001164-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21430/m3xnp4wcs0
title: Three SARS-CoV-2 spike protein variants delivered intranasally by measles and mumps vaccines are broadly protective

description: To develop next-generation intranasal SARS-CoV-2 vaccines based on three components of the MMR vaccine to enhance protection of the respiratory tract, the initial/primary site of SARS-CoV-2 infection.
DOI: 10.21430/m3yu1g5k1k
title: SARS-CoV-2 Variants from Long-Term, Persistently Infected Immunocompromised Patients Have Altered Syncytia Formation, Temperature-Dependent Replication, and Serum Neutralizing Antibody Escape

description: To understand the impact of SARS-CoV-2 mutations appearing during prolonged infections in immunocompromised patients.
DOI: 10.21430/m3axzxjn91
title: SeroNet Longitudinal Study v4.2.1

description: A study to understand immune response to COVID-19 vaccination and SARS-CoV-2 infection in healthy/immunocompromised groups over multiple timepoints.
DOI: 10.21430/m3dypq4gbe
title: Co-administration of seasonal quadrivalent influenza and COVID-19 vaccines leads to enhanced immune responses to influenza virus and reduced immune responses to SARS-CoV-2 in naive mice

description: The authors assessed the protective efficacy and humoral immune responses elicited by concomitant administration of a QIV and the Pfizer-BioNTech mRNA COVID-19 vaccine in naive BALB/c mice.
DOI: 10.21430/m3k0ekexk5
title: Induction of stalk-reactive antibodies with ADCC reporter activity by administration of a live-attenuated influenza virus vaccine to children

description: Here, the authors sought to determine if certain responses could be induced through administration of LAIV to influenza vaccine naive young children, with different influenza virus exposure histories.
DOI: 10.21430/m3bylwxjny
title: CpG ACE-Dextran MP

description: CpG MP expressing COBRA
DOI: 10.21430/m36rlssi99
title: Treg Adoptive Therapy in Subclinical Inflammation in Kidney Transplantation

description: This is a multi-center, open-label, randomized, controlled trial with 2 cohorts: 1. Maintenance CNI based immunosuppression therapy and 2. PolyTregs.
DOI: 10.21430/m3llnprdy9
title: Regulatory T Cell Modulation in Kidney Transplantation with Biologic Blockade of Dual Effector Pathways, CD28 and IL-6

description: Multi-center, non-randomized, single arm, prospective trial with an investigational product (lulizumab pegol (BMS-931699) in the context of a novel immunosuppression regimen
DOI: 10.21430/m3bjeti5yu
title: Systems immunology analysis of human tonsil organoids identifies host-specific correlates of protection to different influenza vaccines

description: Due to the empirical nature of most vaccine development and design, few correlates of protection (beyond neutralizing antibodies) have been identified in humans following immunization. In particular, lymphoid tissues, which are the sites of the evolving response, have been understudied due to logistical and ethical issues. Thus, most prior work on vaccine correlates of protection have been unable to identify the mechanisms involved in potentiating vaccine responses. To address this gap, in this study we used an immune organoid model to identify novel correlates and predictors of the human influenza response.
DOI: 10.15468/dl.3ugrfz
title: Occurrence Download

description: A dataset containing 4692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ZMH Ichthyology collection",
 "TaxonKey is Stomiiformes"
 ]
}

 The dataset includes 4692 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001176-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vubpn7
title: Occurrence Download

description: A dataset containing 52199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 52199 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001177-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yznrjk
title: Occurrence Download

description: A dataset containing 13577 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Machine Observation)",
 "Country is India",
 "GadmGid is IND.34_1",
 "TaxonKey is Pavo cristatus Linnaeus, 1758",
 "Year 1985-2025"
 ]
}

 The dataset includes 13577 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001178-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krj26m
title: Occurrence Download

description: A dataset containing 2295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Pulsatrix perspicillata (Latham, 1790)"
 ]
}

 The dataset includes 2295 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001179-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3carhh
title: Occurrence Download

description: A dataset containing 913 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Exorista larvarum (Linnaeus, 1758)"
 ]
}

 The dataset includes 913 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001180-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q294ka
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Berberis chinduensis Y.K.Li, Harber, Y.W.Xing & C.C.Yu)",
 "Year is greater than or equal to 2008",
 "Year is less than or equal to 2024",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Living Specimen, Human Observation, Observation, Occurrence evidence, Machine Observation)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001181-250123221155621/datasets/export for details.
DOI: 10.15468/dl.6yf6yx
title: Occurrence Download

description: A dataset containing 130516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "Geometry POLYGON((-102.25555 20.03896,-100.5934 20.03896,-100.5934 21.14687,-102.25555 21.14687,-102.25555 20.03896))",
 "HasGeospatialIssue is false",
 "TaxonKey is Passeriformes"
 ]
}

 The dataset includes 130516 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001169-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78xqgp
title: Occurrence Download

description: A dataset containing 740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lynx pardinus (Temminck, 1827)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 740 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001182-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74bf4e
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pulsatrix perspicillata pulsatrix (zu Wied-Neuwied, 1820)"
 ]
}

 The dataset includes 13 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001183-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6hz3v6
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.67783 39.39762,-0.55712 39.39762,-0.55712 42.24468,-7.67783 42.24468,-7.67783 39.39762))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Campylopus introflexus (Hedw.) Brid."
 ]
}

 The dataset's 1 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001173-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.