cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0157033.10fu
title: SH0157033.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157034.10fu
title: SH0157034.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157035.10fu
title: SH0157035.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/inscriptifact-ouc112042495
title: Cuneiform Tablet 1913.14.1728, Spurlock 1913.14.1728

description: [Text Description:] Administrative tablet ❧ [Text or Publication Number Note:] Spurlock 1913.14.1728; CDLI P421579 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Light Brown (5YR 6.5/4) Yellowish White (10YR 9/2) Dark Gray (N 3.25/ 7.7% R) ❧ [Physical Object Note:] 5 x 3.4 x 1.6 cm (25 g)
DOI: 10.15468/dl.k8xzvd
title: Occurrence Download

description: A dataset containing 3004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, Svalbard and Jan Mayen, Portugal, Spain, France, Germany, Belgium, Netherlands, Switzerland, Austria, Italy, Greece, Cyprus, Poland, Czechia, Slovakia, Hungary, Albania, Serbia, Romania, Bulgaria, Türkiye, Russian Federation, Ukraine)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Elytrigia elongata (Host) Nevski"
 ]
}

 The dataset includes 3004 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065217-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc112042629
title: Cuneiform Tablet 1913.14.1741, Spurlock 1913.14.1741

description: [Text Description:] Popular proverb inscribed by teacher and student: "In the town of the vagrants, the lame is a courier." ❧ [Text or Publication Number Note:] Spurlock 1913.14.1741; CDLI P421592 ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Yellowish White (10YR 9/2) ❧ [Physical Object Note:] 9 x 8.1 x 3.4 cm (179 g)
DOI: 10.15468/dl.kjh2by
title: Occurrence Download

description: A dataset containing 1809920 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Elymus L., Elsholtzia Willd., Elodea Michx., Eleusine Gaertn., Elephantopus L., Eleocharis R.Br., Elatine L.)"
 ]
}

 The dataset includes 1809920 records from 2675 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006932-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15178434
title: Identifying non-coding variant effects at scale via machine learning models of cis-regulatory reporter assays

description: Supplemental data and resources for "Identifying non-coding variant effects at scale via machine learning models of cis-regulatory reporter assays"

Including:

MPAC predictions for:

Siraj 2024 (UKBB/BBJ/GTeX) MPRA 

DNase Allele Specific Effects

ClinVar (20230930)

COSMIC (v98)

gnomAD (v3.1.2 SNPs)

Saturation Mutagenesis of 18,658 Human Promoters

Supplemental Tables for:

Promoter level function x constraint relationships

Functional enrichments for promoter level function x constraint relationships

Model hyperparameters

All MPAC model artifacts
DOI: 10.5281/zenodo.15186315
title: Identifying non-coding variant effects at scale via machine learning models of cis-regulatory reporter assays

description: Supplemental data and resources for "Identifying non-coding variant effects at scale via machine learning models of cis-regulatory reporter assays"

Including:

MPAC predictions for:

Siraj 2024 (UKBB/BBJ/GTeX) MPRA 

DNase Allele Specific Effects

ClinVar (20230930)

COSMIC (v98)

gnomAD (v3.1.2 SNPs)

Saturation Mutagenesis of 18,658 Human Promoters

Supplemental Tables for:

Promoter level function x constraint relationships

Functional enrichments for promoter level function x constraint relationships

Model hyperparameters

All MPAC model artifacts
DOI: 10.15468/dl.xakj9z
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Astragalus shiroumensis Makino",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 136 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207098-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xkimbd
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002020-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cifq8l
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004777-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5har6
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009957-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vlqvhy
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002108-160430102343922/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eku6iw
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010434-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4qnf9
title: Occurrence Download

description: A dataset containing 515 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesaspis gadovii (Boulenger, 1913)"
 ]
}

 The dataset includes 515 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0223407-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqu6eg
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028407-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyclgs
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004807-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7af03e
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010095-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgy7yv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Camellia salicifolia Champ. ex Benth.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207104-220831081235567/datasets/export for details.
DOI: 10.15468/dl.c5bmmz
title: Occurrence Download

description: A dataset containing 65797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lampropeltis triangulum (Lacépède, 1789), Coluber constrictor Linnaeus, 1758, Storeria dekayi (Holbrook, 1839), Nerodia sipedon (Linnaeus, 1758), Elgaria coerulea (Wiegmann, 1828), Diadophis punctatus (Linnaeus, 1766), Regina septemvittata (Say, 1825), Heterodon nasicus Baird & Girard, 1852, Heterodon platirhinos Latreille, 1801, Hypsiglena torquata (Günther, 1860), Pituophis catenifer (Blainville, 1835), Thamnophis ordinoides (Baird & Girard, 1852), Thamnophis radix (Baird & Girard, 1853), Thamnophis saurita (Linnaeus, 1766), Thamnophis butleri (Cope, 1889), Thamnophis elegans (Baird & Girard, 1853), Phrynosoma douglasii (Bell, 1829), Phrynosoma hernandesi Girard, 1858, Plestiodon fasciatus (Linnaeus, 1758), Plestiodon septentrionalis Baird, 1858, Plestiodon skiltonianus Baird & Girard, 1852, Crotalus horridus Linnaeus, 1758, Crotalus oreganus Holbrook, 1840, Crotalus viridis Rafinesque, 1818, Charina bottae (Blainville, 1835), Dermochelys coriacea (Vandelli, 1761), Dermochelys coriacea (Vandelli, 1761), Thamnophis sirtalis (Linnaeus, 1758), Contia tenuis (Baird & Girard, 1852), Hypsiglena chlorophaea Cope, 1860, Pantherophis spiloides (Duméril, Bibron & Duméril, 1854), Pantherophis vulpinus (Baird & Girard, 1853), Opheodrys vernalis (Harlan, 1827), Actinemys marmorata (Baird & Girard, 1852), Sternotherus odoratus (Latreille, 1802), Apalone spinifera (Lesueur, 1827), Chelydra serpentina (Linnaeus, 1758), Chrysemys picta (Schneider, 1783), Clemmys guttata (Schneider, 1792), Glyptemys insculpta (Le Conte, 1830), Graptemys geographica (Lesueur, 1817), Terrapene carolina (Linnaeus, 1758), Trachemys scripta (Thunberg In Schoepff, 1792), Lepidochelys kempii Garman, 1880, Emydoidea blandingii (Holbrook, 1838), Dermochelys coriacea (Vandelli, 1761))",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-111.2485 41.67354, -52.36458 41.67354, -52.36458 59.54304, -111.2485 59.54304, -111.2485 41.67354))",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 65797 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071604-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfljdw
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009773-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9va5nv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene conica L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207099-220831081235567/datasets/export for details.
DOI: 10.15468/dl.smkcxx
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albizia retusa Benth.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0207100-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sunz5
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010302-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwqgko
title: Occurrence Download

description: A dataset containing 880446643 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 880446643 records from 15918 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004773-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnpcz8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenitis pauciflora",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007984-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpyhu9
title: Occurrence Download

description: A dataset containing 4961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((103.24905 -47.17767,191.75095 -47.17767,191.75095 -11.82233,103.24905 -11.82233,103.24905 -47.17767))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hovea linearis"
 ]
}

 The dataset includes 4961 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080711-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxxu4v
title: Occurrence Download

description: A dataset containing 14830642 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Ecuador"
 ]
}

 The dataset includes 14830642 records from 2714 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014717-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhdfsa
title: Occurrence Download

description: A dataset containing 17719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Boletus edulis Bull., Boletus L., Lactarius deliciosus (L.) Gray, Hydnum repandum L., Cantharellus cibarius Fr., Craterellus tubaeformis (Fr.) Quél., Craterellus aurora)",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17719 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267316-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57w7dp
title: Occurrence Download

description: A dataset containing 585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Potamothrix heuscheri (Bretscher, 1900))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 585 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050912-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zuvwz
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Norops barkeri Schmidt, 1939"
 ]
}

 The dataset includes 75 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010120-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dcbkwm
title: Occurrence Download

description: A dataset containing 2067 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Conopsis nasus (Günther, 1858)"
 ]
}

 The dataset includes 2067 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308936-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gv6xxv
title: Occurrence Download

description: A dataset containing 10005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bomarea Mirb."
 ]
}

 The dataset includes 10005 records from 290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299622-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbbm33
title: Occurrence Download

description: A dataset containing 1726 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Country is Luxembourg",
 "Country is Sweden",
 "Country is Netherlands",
 "Country is Belgium",
 "Country is Norway",
 "Country is Denmark",
 "Country is Germany",
 "Country is Finland"
 ]
 },
 "TaxonKey is Empoasca vitis (Göthe, 1875)"
 ]
}

 The dataset includes 1726 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197036-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.