cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.663fb/1
title: microsatellite markers, Koompassia malaccensis in Singapore

description: Microsatellite data (8 loci) for 179 adults and 2,013 recruits of the canopy tree Koompassia malaccensis from three primary forest patches within Singapore.
DOI: 10.5061/dryad.6q16d/1
title: Kurnath et al R script expt 1

description: Code written in R to analyse data from the first experiment, determining the maximum dose of creosote resin in woodrats at two ambient temperatures. Specifically, the maximum dose for each individual was compared across temperatures with an ANOVA.  Intake data was log transformed, averaged across all days in the trial per individual, and then ANOVAs were run with Tukey's post-hoc tests to determine the effect of temperature.
DOI: 10.5061/dryad.6q16d/2
title: Kurnath et al R script expt 2

description: Code written in R to analyze data from the second experiment in the study, investigating the effect of temperature on the ability of woodrats to persist in a feeding trial while ingesting the same daily dose of creosote resin (ie, 0.36 g resin/day).  There are two main parts to the code.  First, we analyzed food intake and body mass data from animals at 25 and 29 degC, to determine if animals had similar energetic costs at these temperatures.  Data was analyzed with ANOVAs.  Second, we analyzed  survival and intake (food and resin) from animals at three temperatures.  Survival data was analyzed with a Kaplan-Meier test, and intake data was analyzed with ANOVAs and Tukey's post-doc tests.
DOI: 10.5061/dryad.6q16d/3
title: Maximum Dose for Creosote Resin

description: Data spreadsheet used with "Kurnath et al Experiment 1" code in R, includes maximum dose for creosote resin of each individual in the study.
DOI: 10.5061/dryad.6q16d/4
title: Daily Intake Data from Maximum Dose Trial

description: Data spreadsheet analyzed by "Kurnath et al Experiment 1" code in R.  Each row represents one day of one animal in the feeding trial; there were 16 animals in the trial that lasted 21 days.  Columns represent treatment groups (temperature, cool or warm), days in the trial, dietary concentration of creosote resin presented to the animals, body mass, food intake, creosote resin intake, and water intake of the animals during this experiment.
DOI: 10.5061/dryad.6q16d/5
title: Comparing energetic costs at two temperatures

description: Data spreadsheet analyzed by "Kurnath et al Experiment 2" code in R.  Includes food intake and body mass data from animals at either 25degC or 29degC during a 6-day feeding trial.
DOI: 10.5061/dryad.77563/1
title: Alignments
DOI: 10.5061/dryad.77563/2
title: Trees
DOI: 10.5061/dryad.80150/4
title: DataReadMe
DOI: 10.5061/dryad.87g80.2
title: Data from: Site-specific group selection drives locally adapted group compositions
DOI: 10.5061/dryad.8j0g0/1
title: Data on inbreeding depression and stress in Silene vulgaris

description: This document contains data on seed set and germination after self- and cross-pollination of Silene vulgaris and on the performance of the resulting seedlings grown under different stress conditions.
DOI: 10.5061/dryad.8r231/1
title: Carnivore and prey observations and covariates, Clare et al. Ecology and Evolution

description: This data includes binomial presence observations for i) wolves, coyotes, gray foxes, and red foxes over weekly intervals, ii) binomial presence observations for white-tailed deer and lagomorphs over daily intervals, and iii) associated site covariates as described in Clare et al. The observations arise from remote camera sampling in central Wisconsin, and rows index specific camera stations.  Note that continuous land-cover covariates (drawn form the 2011 NLCD) have been scaled to have mean 0 and sd 0.5; local trail covariates are all entered as binary variables.
DOI: 10.5061/dryad.b75j7/1
title: Squared displacement and utilization distribution data for Merkle et al. 2016 Oikos

description: The data file is an excel database (.xlsx) with two sheets. Data summarized in both sheets were derived from the movements of 25 adult female bison, GPS collared for one to two years between 2005 and 2013 in Prince Albert National Park (Canada). GPS collars took locations every 3 hours during the monitoring period. Sheet 1 (named “bison_MSD_data”) provides the data for calculating Mean Squared Displacement (MSD) over the course of one year for 41 bison-years. Time is based on a biological year, which starts on 1 April. The units of the squared displacement column is squared kilometers.Sheet 2 (named “bison_UD_data”) provides the data for calculating the Utilization Distribution of bison across meadows within Prince Albert National Park. The database is organized by meadow ID, and includes the X and Y coordinates (projection: CRS("+proj=utm +zone=13 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs")) of the centroid of each meadow. The final column represents an index of bison density, calculated as the total number of unique visits of all 25 individuals to meadows during the monitoring period.
DOI: 10.5061/dryad.c19kb/1
title: Supplementary Materials

description: Supplementary figures, tables and references, with the exception of Supplementary Table 2, which is provided as an xls file.
DOI: 10.5061/dryad.c19kb/2
title: Supplementary Table 2

description: Summary statistics for 647 cladograms of animals and plants
DOI: 10.5061/dryad.c19kb/3
title: Ghosts_Scripts

description: Scripts for Ghosts program (calculating indices of stratigraphic congruence and other statistics)
DOI: 10.5061/dryad.c19kb/4
title: Ghosts_data_files_2016_DRYAD

description: Ghosts data files
DOI: 10.5061/dryad.c19kb/5
title: nexus_files

description: Subset of the cladograms for which nexus files were available
DOI: 10.5061/dryad.d6446/1
title: Ephippiger diurnus preference functions

description: Data on female preference and male acoustic signals of 10 populations of the bushcricket Ephippiger diurnus
DOI: 10.5061/dryad.f7q88/1
title: CC_raw_coordinates

description: This file contains the coordinates of landmarks of the skull for the parental and F1 specimens from the Collaborative Cross consortium.
DOI: 10.5061/dryad.f7q88/2
title: landmark_order

description: This file contains the order and abbreviature of the skull landmarks.
DOI: 10.5061/dryad.f7q88/3
title: CC_clasif

description: This file contains the information on sex, age and strain for each specimen in the dataset.
DOI: 10.5061/dryad.k5k3n/1
title: Mineral content in four Neotropical Ficus species fruits

description: Information on specimens of four Ficus species including  herbarium, locality, collector and specimen number, year of collection, distance of collection locality to the nearest effective marine sodium source, nearest effective marine sodium source, georeferenced locality (lat. and long.), and concentration of twelve minerals (Na, Al, Bo, Ca, Cu, Fe, Mg, Mn, P, K, S, Zn) found in each Ficus fruit specimen.
DOI: 10.5061/dryad.n3mj3/6
title: isotope plots

description: R code for plotting wild-caught isotope data.
DOI: 10.5061/dryad.nd1js/10
title: R script to reproduce RNAi phenotype plots (Figures S4 and S5))

description: Annotated R script with code to read and plot raw data from phenotypic measurements of dsRNA treated beetles . Requires files "tcas_RNAi.csv", "otau_RNAi.csv" and  "osag_RNAi.csv".
DOI: 10.5061/dryad.nd1js/3
title: Insect OTD protein sequences and tree (data for Figure S2)

description: Aligned sequence and FastTree generated phylogram of selected insect orthodenticle proteins.
DOI: 10.5061/dryad.nd1js/4
title: R script to reproduce expression plots (Figures S3 and S8)

description: Annotated R script with code to read and plot raw data from qPCR and RNAseq estimations of stage specific and tissue specific levels of six3 and otd transcripts. Requires files "tcas_qPCR_stages.csv", "otau_rnaseq_stages.csv", "osag_rnaseq_stages.csv", "tcas_qpcr_tissues.csv" and "otau_rnaseq_tissues.csv".
DOI: 10.5061/dryad.nd1js/5
title: Tribolium castaneum qPCR by stage

description: Raw data table for T. castaneum stage-specific qPCR estimation of six3 and otd transcript levels. Use R script in "Expression_plots.R" for analysis and plotting.
DOI: 10.5061/dryad.nd1js/6
title: Onthophagus taurus RNAseq by stage

description: Raw data table for O. taurus stage-specific RNAseq estimation of six3 and otd transcript levels. Use R script in "Expression_plots.R" for analysis and plotting.
DOI: 10.5061/dryad.nd1js/7
title: Onthophagus sagittarius RNAseq by stage

description: Raw data table for O. sagittarius stage-specific RNAseq estimation of six3 and otd transcript levels. Use R script in "Expression_plots.R" for analysis and plotting.
DOI: 10.5061/dryad.nd1js/8
title: Tribolium castaneum qPCR by pupal tissue

description: Raw data table for T. castaneum tissue-specific qPCR estimation of six3 and otd transcript levels. Use R script in "Expression_plots.R" for analysis and plotting.
DOI: 10.5061/dryad.nd1js/9
title: Onthophagus taurus RNAseq by pupal tissue

description: Raw data table for O. taurus tissue-specific RNAseq estimation of six3 and otd transcript levels. Use R script in "Expression_plots.R" for analysis and plotting.
DOI: 10.5061/dryad.ps4m1/1
title: Wild boar population, sex, age, weigh, litter size, maximal number of paternal allele, number of father estimated with Gerud, number of father estimated with Cervus, ID of father identified by Cervus
DOI: 10.5061/dryad.ps4m1/2
title: Wild boar genotypes
DOI: 10.5061/dryad.q7c24/1
title: Data used in the paper

description: "Datadryad" is a dataframe with 9 variables: 1) idmother = mother identity, 2) year = year of lamb birth, 3) pws = previous maternal weaning success with 3 modalities (0 = "no lamb weaned", 1 = "a son weaned", 2 = "a daugther weaned"), 4) idfather = father identity, 5) sex = lamb sex (0 = female, 1 = male), 6) env = environmental conditions, 7) condition = maternal condition, 8) age = maternal age, 9) fathersuccess = annual paternal reproductive success. All continuous variables have been centered and divided by two standard deviations.
DOI: 10.5061/dryad.r7c23/1
title: Plant biomass data from the experiment.

description: Plant biomass data in a tab-separated txt-file. Species name abbreviations correspond to the paper.
DOI: 10.5061/dryad.r7c23/2
title: Plant damage data

description: Plant damage data of field plants in a tab-separated txt-file. Species name abbreviations correspond to the paper.
DOI: 10.5061/dryad.rm660/2
title: Protrusion classification

description: This dataset contains all the SEM images used for protrusion classification in Rolo et al., along with a spreadsheet containing information about the embryos used (cross, genotype, somite-stage (ss)). All images were acquired at 2000x magnification with a with a JEOL 7401 FEGSEM (see Materials and Methods for full details).
DOI: 10.5061/dryad.v7r0b/1
title: SNP data

description: The raw SNP data for the 15 genetic loci
DOI: 10.5061/dryad.v7r0b/2
title: Bonsall_Morph_Gen_data

description: A csv file containing the morphological and SNP data for all individuals
DOI: 10.5061/dryad.v7r0b/3
title: CFit Input file

description: An example CFit7 input file for the CFit analyses
DOI: 10.5061/dryad.v7r0b/4
title: Vines et al Evolution R code

description: The R code for the parts of the analysis that were carried out in R, and the code for making the figures.
DOI: 10.5061/dryad.v7r0b/5
title: Vines et al Bonsall Creek Analysis

description: An Excel spreadsheet containing preliminary analysis for the genetic data
DOI: 10.5061/dryad.vh942/1
title: Pecten-Msat-Genotypes

description: File: Pecten-Msat-Genotype.xls
Contain all the data in excel formating, ready to be converted by a software such as CREATE (Coombs et al. 2008)

First sheet ("genotype_raw"): raw data (all individuals genotyped at all microsatellite loci)
Each line is an individual animal.Each columns after population and individual identifier contain one allele. 
Both alleles for a given locus are given consecutively (see header row).

For details on microatellites primers, PCR protocols and marker statistics please see Morvezen et al. 2013 and Morvezen et al. 2016
Population names are abbreviated in the publication for simplicity.

Name equivalences
Hatch=Hatchery=H
Wild=W


Second sheet ("genotypes_cleaned")
Same as the first sheet minus indivudals with &gt;50% missing data. This is the dataset used as input for all analyses in the publication.
DOI: 10.5061/dryad.vh942/2
title: Genotype_clean-GENEPOP

description: This file contain the same data as the sheet "genotypes_clean" of the associated excel file, but in GENEPOP (Raymont & Rousset 1995) format. This is provided for convenience of use.Below are the equivalence of population names between files.POPULATION ID		GENEPOP IDHatch12		CAu001Wild12		NAu001Hatch07		PmE001Hatch09		PmE166Wild07		PmN001Wild09		PmN101
DOI: 10.5061/dryad.2517b/1
title: main data for fasting plasma glucose change
DOI: 10.5061/dryad.2517b/2
title: sub-study sample for fasting plasma change
DOI: 10.5061/dryad.2pf35/1
title: list of the samples used in the phylogeny

description: Gives for each sample used in the phylogeny, its ID number, species, subspecies, country and locality of capture, and the Genbank access number of the sequence used.
DOI: 10.5061/dryad.53g73/1
title: ICI data from Gero et al 2016 Socially segregated sympatric sperm whales clans in RSOS

description: ICI data from analysis in Gero et al (2016) Socially Segregated, Sympatric Sperm Whale Clans in the Atlantic Ocean in RSOS
DOI: 10.5061/dryad.57025/1
title: Data matrix used for the phylogenetic analysis.

description: This taxon/character matrix was built with Mesquite (3.04). It was used to perform a phylogenetic analysis aiming at resolving the position of the specimen MUN STRI 36643, an edentulous partial horizontal ramus of dentary coming from the Ware Formation (Cocinetas Basin, La Guajira peninsula, Colombia). The characters are from Gaudin [2004, Phylogenetic relationships among sloths (Mammalia, Xenarthra, Tardigrada): the craniodental evidence. Zoological Journal of the Linnean Society, 140, 255–305].
DOI: 10.5061/dryad.58sn8/3
title: Uroctonus SNAPP data set all samples

description: SNAPP input file of unlinked SNPs from 191 samples. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.58sn8/4
title: Uroctonus SNAPP input file northern clade

description: SNAPP input file of unlinked SNPs from all samples in the northern clade. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.58sn8/5
title: Uroctonus SNAPP input file southern clade

description: SNAPP input file of unlinked SNPs from all samples in the southern clade. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.58sn8/6
title: Uroctonus STRUCTURE file northern clade

description: STRUCTURE input file of unlinked SNPs from all samples in the northern clade. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.58sn8/7
title: Uroctonus STRUCTURE file southern clade

description: STRUCTURE input file of unlinked SNPs from all samples in the southern clade. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.5mm01/2
title: Empirical data

description: Empirical data used to  produce observed boldness distributions (Figure 4) and calculate persistence based on 90 and 24 days (appendix, Figure 1A).
DOI: 10.5061/dryad.5mm01/3
title: R code for the simulation of keystone effects on collective outcomes

description: This is an R script of the simulation code used in the preparation of the manuscript "The effect of keystone individuals on collective outcomes can be mediated through interactions or behavioral persistence".
DOI: 10.5061/dryad.6q16d/6
title: Survivalship Analysis

description: Data spreadsheet analyzed by "Kurnath et al Experiment 2" code in R, includes animals at three temperatures and the number of days they persisted in a 10-day feeding trial.
DOI: 10.22008/fk2/bovbvr/h1zpw0
title: Unknown_SE_D283.csv

description: :unav
DOI: 10.34934/dvn/pqq3w7
title: Collectieve acties tijdens de algemene werkstakingen van 1902 en 1913 in Gent

description: Datasets opgesteld ter ondersteuning van mijn masterproef. Hierin maak ik een ruimtelijke vergelijking tussen de algemene werkstakingen van 1902 en 1913 in Gent. De data is afkomstig uit de Vooruit en Het Volk tussen 10 en 22 april 1902 en tussen 14 en 24 april 1913. Drie datasets zijn opgesteld: de verzameling van collectieve acties in de kranten van 1902, de verzameling van collectieve acties in de kranten van 1913 en de verzameling van plaatsen waar acties plaatsvonden, aangevuld met belangrijke locaties in de handen van Gentse socialistische en christelijke arbeidersbewegingen (aangeduid als socialistisch of antisocialistisch territorium). De datasets met collectieve acties bevatten de velden actievorm, deelnemende groep, ideologie, plaats, startuur, duur, startdatum, einddatum, toelichting, opmerkingen en bronnen. De dataset met plaatsen bevat de plaatsnaam, alternatieve namen, tot welk territorium het eventueel behoort, het locatietype, start- en einddatum, de coördinaten in GeoJSON formaat, opmerkingen en bronnen. Meer toelichting over de gegevenstypes is in de bijhorende documentatie te vinden.
DOI: 10.5281/zenodo.8300663
title: Simulation data for HIVE experiment generated using VirtualLab

description: HIVE is a high heat flux experimental facility at the UK Atomic Energy Authority designed to test plasma facing components for fusion devices. This data has been generated to train machine learning models to maximise the impact of the facility. There are 4 datasets; PowerVariation.hdf - This is for training models to predict the amount of power delivered to a component by the induction heating system, and the variation (non-uniformity) of the heating profile. JouleHeating.hdf - Values for the Joule heating on the coil adjacent surface. This is used to train a 2D surrogate model of the heating profile. Values are in W/m^3. TempNodal.hdf - Temperature at each node of the component. This is used to train a 3D surrogate model of the temperature field throughout the component. Values are in Celcius. VMNodal.hdf - Von Mises stress at each node within the component. This is used to train a 3D surrogate model of the Von Mises tress field throughout the component. Values are in MPa. HIVE_component.med - Mesh file which is required for constructing surrogate models.
DOI: 10.5281/zenodo.8300662
title: Simulation data for HIVE experiment generated using VirtualLab

description: HIVE is a high heat flux experimental facility at the UK Atomic Energy Authority designed to test plasma facing components for fusion devices. This data has been generated to train machine learning models to maximise the impact of the facility. There are 4 datasets; PowerVariation.hdf - This is for training models to predict the amount of power delivered to a component by the induction heating system, and the variation (non-uniformity) of the heating profile. JouleHeating.hdf - Values for the Joule heating on the coil adjacent surface. This is used to train a 2D surrogate model of the heating profile. Values are in W/m^3. TempNodal.hdf - Temperature at each node of the component. This is used to train a 3D surrogate model of the temperature field throughout the component. Values are in Celcius. VMNodal.hdf - Von Mises stress at each node within the component. This is used to train a 3D surrogate model of the Von Mises tress field throughout the component. Values are in MPa. HIVE_component.med - Mesh file which is required for constructing surrogate models.
DOI: 10.17031/64ef3fe893938
title: North Sea additional CPR taxa
DOI: 10.5281/zenodo.8301514
title: Suppl. File S1 - OGM plants approved by CTNBio until 2023 in Brazil

description: Suppl. File S1 - OGM plants approved by CTNBio until 2023 in Brazil.
DOI: 10.5281/zenodo.8301513
title: Suppl. File S1 - OGM plants approved by CTNBio until 2023 in Brazil

description: Suppl. File S1 - OGM plants approved by CTNBio until 2023 in Brazil.
DOI: 10.6084/m9.figshare.24004281
title: Supplementary Material for: Development of an Oral Immunotherapy-related Parental Burden Scale

description: Introduction: Oral immunotherapy (OIT) imposes a burden on parents and their children with food allergies (FA). We already developed a questionnaire for OIT-related Parental Burden Scale (OIT-PB). However, the previous questionnaire had some problems. This study modified OIT-PB and verified its reliability and validity. Methods: A 20-item draft covering the physical and mental burdens caused by OIT was prepared jointly with multiple allergists. The Food Allergy Quality of Life Questionnaire-Parental Burden (FAQLQ-PB) and Stress Response Scale-18 (SRS-18) were used to verify concurrent validity. A questionnaire survey was administered during treatment to parents of FA children who had started OIT for the first time. An additional OIT-PB survey was performed at one specific institution one week after the posttreatment survey. Results: The responses of 64 of the 76 recruited parents were analyzed. Of the 20 questions, 1 item was excluded owing to the floor effect, 1 was excluded because its commonality was less than 0.2, and 2 were excluded because their factor loading values were less than 0.4. Factor analysis was used to classify the OIT-PB into the following 4 subscales: "burden caused by adherence to treatment plan," "anxiety about symptom-induced risk," "burden due to patient's eating behavior," and "anxiety about treatment effect." The Cronbach's α for all 16 items of the OIT-PB was 0.893; Cronbach's α for each subscale was 0.876, 0.898, 0.874, and 0.717. The re-test reliability coefficient was 0.864 (95% CI: 0.720−0.937, P &lt; 0.001). A significant positive correlation was found between the OIT-PB and FAQLQ-PB (R = 0.610 (95% CI: 0.422−0.747), p &lt; 0.001) and the SRS-18 (R = 0.522 (95% CI: 0.306-0.687), p &lt; 0.001). A significant negative correlation was found between the rate of increase in OIT food intake and the “anxiety about treatment effect” score (R = -0.355 (95% CI: -0.558—0.112), p &lt; 0.001). Parents of children on the hen’s egg OIT treatment scored higher on the “burden due to patient’s eating behavior” subscale than did parents of children on the milk and wheat OIT treatment. Conclusion: The burden of OIT experienced by parents can be broadly classified into four categories. The modified OIT-PB was able to evaluate them individually and was shown to have reliability and validity. This scale is expected to be useful in the development of OIT that considers not only therapeutic effect but also the burden experienced by FA children and their parents.