cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/67jpgxxr4s
title: Kenya Urban Slum Study

description: This data contains responses from a cross-sectional survey among a convenience sample of 506 adults residing in Korogocho slum using the WHO validated Alcohol and Substance Involvement Screening Test (ASSIST). We modified the questionnaire based on our findings from the focus group and semi-structured interviews to reflect the community’s social and cultural context. Systematic and random sampling was impossible in this community because of the lack of clearly defined and structured residences and high population density in a very small area. The team of trained interviewers selected eligible informants based on their accessibility and cultural proximity to the interviewer. The interview was conducted face-to-face without the presence of other people either in the participants’ residence or in secluded public places.
DOI: 10.6084/m9.figshare.22101998.v2
title: Competition between lysogenic and sensitive bacteria is determined by the fitness costs of the different emerging phage-resistance strategies

description: Dataset for manuscript Rendueles et al <br> Abstract: Many bacterial genomes carry prophages whose induction can eliminate competitors. In response, bacteria may become resistant by modifying surface receptors, by lysogenization, or by other poorly known processes. All these mechanisms affect bacterial fitness and population dynamics. To understand the evolution of phage resistance, we co-cultivated a phage-sensitive strain (BJ1) and a poly-lysogenic<em>Klebsiella pneumoniae</em>strain (ST14) under different phage pressures. The population yield remained stable after 30 days. Surprisingly, the initially sensitive strain remained in all populations and its frequency was highest when phage pressure was strongest. Resistance to phages in these populations emerged initially through mutations preventing capsule biosynthesis. Protection through lysogeny was rarely observed because the lysogens haveincreased death rates due toprophage induction. Unexpectedly, the adaptation process changed at longer time scales: the frequency of capsulated cells in BJ1 populations increased again, because the production of capsule was fine-tuned, reducing the ability of phage to absorb. Contrary to the lysogens, these capsulated resistant clones are pan-resistant to a large panel of phages. Intriguingly, some clones exhibited transient non-genetic resistance to phages, suggesting an important role of phenotypic resistance in coevolving populations.Our results show that interactions between lysogens and sensitive strains are shaped by antagonistic co-evolution between phages and bacteria. These processes may involve key physiological traits, such as the capsule, and depend on the time frame of the evolutionary process. At short time scales, simple and costly inactivating mutations are adaptive, but in the long-term, changes drawing more favorable trade-offs between resistance to phages and cell fitness become prevalent.
DOI: 10.6084/m9.figshare.27948756.v1
title: Genotype.xlsx

description: <i>TLR6</i> (rs3796508 and rs5743808) and <i>NFKB1</i> (rs230504 and rs4648052) were genotyped.
DOI: 10.6084/m9.figshare.6152093.v1
title: Effect of water temperature and pH on the concentration and time of ozone saturation

description: Abstract Ozone has been used for many years to disinfect water due to its oxidizing potential. Since it decomposes quickly into molecular oxygen, leaving no residue, it has important advantages for use. The decomposition of ozone is affected by the temperature and pH of the medium, low pH values and temperatures increasing its half-life, which can result in more efficient disinfection. With the objective of increasing the effectiveness of ozonation, this study investigated the effect of temperature (8 ºC and 25 °C) and pH (3.0 and 6.0) of the water on the saturation time and gas concentration, employing two initial gas concentrations (13.3 and 22.3 mg L-1). The concentration of ozone saturation increased as the temperature and pH of the medium decreased, as also with the higher initial gas concentration ( C0). The highest saturation concentrations were obtained at pH 3.0 and 8 °C (4.50 and 8.03 mg L-1 with C0 of 13.3 and 22.3 mg L-1, respectively). This higher ozone content could result in greater decontamination efficiency of the food products washed with this water.
DOI: 10.6084/m9.figshare.14268222.v1
title: Finite Element Analysis of Reinforced Concrete Pile Cap using ATENA

description: Abstract Reinforced concrete (RC) Pile cap, a thick reinforced concrete block, is constructed to provide a connection between a structure and multiple single piles. In the existing design methods, the behavior of RC pile cap is usually considered as a rigid body and resulting forces or reactions on piles are assumed equal. However, in actual conditions, there is a possibility of bending of pile cap and un-equal reactions or forces on piles. This study represents a detailed finite element analysis of RC eight-pile cap by using a computer program ATENA. ATENA serve as rational tools to explain the behavior of RC structures. Research parameters included different types of loading conditions, analysis types such as linear and non-linear, support conditions, length of pile, strength of concrete and thickness of pile cap. The finite element analysis results indicate that the behavior of RC pile cap is not a rigid body and resulting forces or reactions are unequal. Also, it was observed that, support conditions, analysis type and thickness of RC pile cap had a significant effect on the global behavior of RC pile caps.
DOI: 10.6084/m9.figshare.24431305.v1
title: PRISMA_2020_checklist.pdf

description: In this review we created a protocol following the recommendations of preferred reporting criteria for systematic reviews (PRISMA 2020) for the systematic review protocol checklist. Furthermore, we tried to guide our study rationale and create a systematic review of the literature to answer the question: “In patients with full-term gestation - does combining the Foley balloon with dinoprostone for the artificial induction of labor - offer better perinatal results over time from the application of the labor induction method until birth?”
DOI: 10.6084/m9.figshare.3512402.v1
title: Appendix B. Species of bees sampled at Larrea habitat fragments in Tucson, including total counts of individuals, and each species' dietary and nesting habits.

description: Species of bees sampled at Larrea habitat fragments in Tucson, including total counts of individuals, and each species' dietary and nesting habits.
DOI: 10.6084/m9.figshare.7263602.v1
title: Selfie Trap Bait Holder

description: 3-D Printing Model of the Bait Holder used in selfie traps: <br>Gracanin, A. , Gracanin, V. and Mikac, K. M. (2019), The selfie trap: A novel camera trap design for accurate small mammal identification. Ecol Manag Restor, 20: 156-158. doi:10.1111/emr.12345<br>
DOI: 10.17605/osf.io/sc5v2
title: NeuroPose: A Multimodal EEG-HRV-Pose Dataset for Cognitive and Physiological Analysis

description: NeuroPose is a synchronized synthetic multimodal dataset integrating EEG, HRV, and pose data, designed for cognitive and physiological state analysis.
DOI: 10.17632/xbx2j63xfd
title: Android Mischief Dataset: network dataset of mobile phones infected with Android Remote Access Trojans

description: The Android Mischief Dataset is a dataset of network traffic from mobile phones infected with Android RATs. Its goal is to offer the community a dataset to learn and analyze the network behavior of RATs to propose new detections to protect our devices. The dataset consists of 8 packet captures from 8 executed Android RATs. The Android RATs used in the dataset are: - RAT01 - Android Tester v6.4.6 - RAT02 - DroidJack v4.4 - RAT03 - HawkShaw - RAT04 - SpyMAX v2.0 - RAT05 - AndroRAT - RAT06 - Saefko Attack Systems v4.9 - RAT07 - AhMyth - RAT08 - Command-line AndroRAT The dataset contains a folder and its zip for each of the experiments. Each experiment was conducted manually by controlling the attacker and the victim. Considering that, each folder contains the following files: - README.md - the generic description of the execution, containing the name of the executed RAT, details of the RAT execution environment, details of the pcap (client’s IP and server’s IP, time of start of the infection). - APK - APK file generated by the RAT’s attacker program. - Log - very detailed and specific time log of all the actions performed in the client and the server during the experiment. - Pcap - network traffic of the whole infection. - Screenshots - a folder with screenshots of the mobile device and controller while performing malicious actions. - Zeek logs - a folder with Zeek generated logs after running Zeek on a RAT pcap. The zip files are encrypted with the password ‘infected’.
DOI: 10.6084/m9.figshare.11691024.v2
title: Data from: Testing the diversity-productivity relationship in riverine fish communities

description: Data used to produce the results, with variable definitions
DOI: 10.6084/m9.figshare.16996813.v1
title: Supplementary Material for: Next-Generation Sequencing Gene Panels and “Solo” Clinical Exome Sequencing Applied in Structurally Abnormal Fetuses

description: <b><i>Objective:</i></b> The aim of the study was to assess the diagnostic yield of 2 different next-generation sequencing (NGS) approaches: gene panel and “solo” clinical exome sequencing (solo-CES), in fetuses with structural anomalies and normal chromosomal microarray analysis (CMA), in the absence of a known familial mutation. <b><i>Methodology:</i></b> Gene panels encompassing from 2 to 140 genes, were applied mainly in persistent nuchal fold/fetal hydrops and in large hyperechogenic kidneys. Solo-CES, which entails sequencing the fetus alone and only interpreting the Online Mendelian Inheritance in Man genes, was performed in multisystem or recurrent structural anomalies. <b><i>Results:</i></b> During the study period (2015–2020), 153 NGS studies were performed in 148 structurally abnormal fetuses with a normal CMA. The overall diagnostic yield accounted for 35% (53/153) of samples and 36% (53/148) of the fetuses. Diagnostic yield with the gene panels was 31% (15/49), similar to 37% (38/104) in solo-CES. <b><i>Conclusions:</i></b> A monogenic disease was established as the underlying cause in 35% of selected fetal structural anomalies by gene panels and solo-CES.
DOI: 10.6084/m9.figshare.21900762.v5
title: A bioclimatic evaluation of sustainable tourist activities in western Romania

description: The dataset related to the article <i>A bioclimatic evaluation of sustainable tourist activities in western Romania</i><i>.</i>
DOI: 10.6084/m9.figshare.28886669.v5
title: Breaking the Riemann Hypothesis: A Quantum-Mechanical Proof Unveiled

description: In this groundbreaking paper, we present a novel quantum-mechanical approach to prove the Riemann Hypothesis, one of mathematics' most enduring mysteries. By mapping prime numbers to quantum states and using a Hermitian Hamiltonian with arithmetic weights, we demonstrate that all non-trivial zeros of the zeta function lie on the critical line (Re(s) = 1/2). This analytical proof leverages Fourier-tuned frequencies and offers a fresh perspective on number theory. Join us in exploring this potential milestone in mathematical history
DOI: 10.25377/sussex.20052056.v1
title: Dataset for the paper 'Sown wildflowers between vines increase beneficial insect abundance and richness in a British vineyard'

description: Data for paper published in Agricultural and Forest Entomology (2022). <br> This dataset includes the abundance of beneficial insects, list of flowering plants, a species list of pollinators and a species list of solitary wasps, collected at a vineyard in East Sussex in 2016 and 2017. <br> Abstract: <em>1.</em> <em>Traditional vineyards are generally intensive monocultures with high pesticide usage. Viticulture is one of the fastest-growing sectors of English agriculture, although there is currently limited research on habitat management practices.</em> <em>2.</em> <em>In a vineyard in East Sussex, England, we tested five inter-row ground cover treatments on their potential in supporting beneficial insects: two commercially available seed mixes (meadow mix and pollen and nectar mix), a wild bee seed mix (formulated based on pollinator foraging preferences), natural regeneration, and regularly mown grass.</em> <em>3.</em> <em>Over two years, from May to August, we conducted monthly floral surveys and insect surveys using transect walks and pan traps.</em> <em>4.</em> <em>The abundance and richness of flowers in the natural regeneration treatment were twice that of the regularly mown inter-row treatment. By year 2 the abundance of ‘total insects’ sampled was significantly higher in the wild bee mix compared to mown. Likewise, there was a significant effect of treatment type on pollinator richness, with higher mean richness found in wild bee mix.</em> <em>Solitary wasp family richness was highest in the natural regeneration treatment and lowest in the mown treatment</em>. <em>5.</em> <em>Given the rapid growth and lack of specific environmental recommendations for British viticulture, we demonstrate a simple and effective approach for supporting beneficial insects and ecosystem services. Promotion of perennial wildflowers through sowing or allowing natural regeneration in inter-row ground cover in vineyards has the potential to boost biodiversity in vineyards on a large scale if widely adopted.</em>
DOI: 10.25573/data.21514182.v1
title: Data for Atmospheric pressure predicts probability of departure for migratory songbirds

description: Data from Movement Ecology article: Atmospheric pressure predicts probability of departure for migratory songbirds <br> This dataset includes all data necessary to reproduce the departure date and weather analysis in the above paper. For full weather analysis using Cox proportional hazards models, leave dataset as is. To carry out basic descriptive statistics or ANOVA on departure date data, you must first filter the data to include only Departure_Event = 1 (n = 280). These are the actual departure date events. All other rows are weather data from dates prior to the departure event. <br> <strong>Variable explanation:</strong> <br> Motus_Tag_ID = Unique identifiers in Motus Wildlife Tracking System databases <br> Species_Name = Common and scientific species names <br> Species_Season = Species abbreviation, season of departure, and location of departure <br> Spring_or_Fall_Departure = Variable defining season of departure <br> Age = Age class of individual where HY = Hatch Year, AHY = After Hatch Year, SY = Second Year, ASY = After Second Year <br> Sex = Sex of individual where F = female and M = male <br> Departure_Lat = Latitude of departure location in decimal degrees <br> Departure_Lon = Longitude of departure location in decimal degrees <br> Departure_DateTime_UTC = Estimated departure date and time in UTC timezone <br> Start_Time = First day of departure window for weather analysis <br> End_Time = Last day of departure window for weather analysis <br> Departure_Event = Variable signifying on which day the departure event occured for weather analysis <br> Wind_Profit = signed magnitude of wind speed relative to movement direction (m/s) for the hour of departure <br> Pressure_Trend = slope of relationship between atmospheric pressure and time over the 24 hours previous to departure <br> Total_Precipitation = Total precipitation (mm) over the three hours leading up to departure <br> Total_Cloud_Cover = Total cloud cover (0-1) in the hour of departure <br> Departure_Day_of_Year = Departure date converted to day of year (1-365 for non-leap years) <br> Throughout dataset NA = missing and U = Unknown
DOI: 10.6084/m9.figshare.28243412.v1
title: Data and scripts of "A new gecko (Phyllodactylidae: Homonota whitii group) from the Diaguita highlands, Argentina, with an updated phylogeny for the genus"

description: The objectives of this study are to explore the biodiversity and evolutionary relationships within the genus Homonota in the South American Transition Zone (SATZ), particularly in the Diaguita District of northwestern Argentina. By combining genetic data from two mitochondrial and 12 autosomal loci with a detailed morphological dataset, the study aims to describe a new species of Homonota, assess its phylogenetic placement as the northernmost member of the H. whitii group, and highlight the region's status as a biodiversity hotspot. Additionally, the research seeks to update the molecular phylogenetic hypothesis for the genus, providing insights into the evolutionary and ecological dynamics of the SATZ.<br>Refer to the readme file to more information<br>
DOI: 10.6084/m9.figshare.6726065.v2
title: Public FA Data.xlsx

description: This database contains all variables used in the analysis of the association between symptoms of food addiction and various metabolic characteristics including insulin resistance and lipid profiles in the general Newfoundland population<br>
DOI: 10.6084/m9.figshare.25465390.v2
title: Geographical Variations in Virulence Factors and Antimicrobial Resistance Amongst Staphylococci Isolated From Dogs From the United Kingdom and Romania

description: Geographical Variations in Virulence Factors and Antimicrobial Resistance Amongst Staphylococci Isolated From Dogs From the United Kingdom and Romania
DOI: 10.6084/m9.figshare.28068017.v1
title: Effects of different types of milk consumption on Crohn’s disease and the mediating effects of amino acids: A Mendelian randomization study

description: This is the supplementary material of the article which named as Effects of different types of milk consumption on Crohn’s disease and the mediating effects of amino acids: A Mendelian randomization study, the doi of this article is https://doi.org/10.3168/jds.2024-25954
DOI: 10.15468/dl.87fs5w
title: Occurrence Download

description: A dataset containing 4477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Danaus plexippus (Linnaeus, 1758), Ammopelmatus muwu Rentz & Weissman, 1981, Haliotis cracherodii Leach, 1814, Actinemys marmorata (Baird & Girard, 1852), Rana draytonii Baird & Girard, 1852, Thamnophis hammondii (Kennicott, 1860))",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-121.3464 33.21473, -118.6325 33.21473, -118.6325 35.79518, -121.3464 35.79518, -121.3464 33.21473))"
 ]
}

 The dataset includes 4477 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009365-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/s8jc7g93rr
title: RNA PolII is involved in ribosomal RNA transcriptio

description: Currently, the accepted mechanism of production of 18S, 5.8S and 25S ribosomal RNA components in yeast, is polycistronic transcription by RNA Polymerase I, followed by processing. We show here that Candida albicans, during nutritional limitations produces some of these molecules in a second way, leaving them resistant to a 5’-phosphate requiring exonuclease digestion, as they have more than one 5’ phosphate. This suggested new transcription. Applying Pol I and Pol II inhibitors BMH-21 and DRB, anti-RNA cap antibody, EIF4F subunit of cap-binding protein, chromatin immune-precipitation and nucleolar immune fluorescent microscopy, we show them to be products of Pol II. We also show that rapamycin inhibition of TOR also leads to their production. Oligo ligation/primer extension shows their 5’ ends to be at the processing sites. This appears to be a system to maintain protein production during nutritional limitation. The mechanism allowing Pol II to produce them remains to be elucidated.
DOI: 10.6084/m9.figshare.25029815.v2
title: Separate untrimmed ortholog alignments for phylogenomic tree of Midichloriaceae (with Anaplasmataceae and Rickettsiaceae root) (179 genes).

description: Separate untrimmed alignments of 179 orthologs for Midichloriaceae phylogenomic tree, based on dataset by Gianotti et al. 2022 (DOI: 10.1128/aem.02432-21).
DOI: 10.6084/m9.figshare.27936462.v1
title: ROSE output in Ross Sea [Dataset]

description: ROSE output in Ross Sea
DOI: 10.6084/m9.figshare.11717361.v2
title: Community rescue in experimental phytoplankton communities facing severe herbicide pollution

description: Data for:<br><br>Fugère V, Hébert MP, Costa NB, Xu CCY, Barrett RDH, Beisner BE, Bell G, Fussmann GF, Shapiro BJ, Yargeau V, Gonzalez A. (2020) Community rescue in experimental phytoplankton communities facing severe herbicide pollution.<br><br>Abstract: Community rescue occurs when ecological or evolutionary processes restore positive growth in a highly stressful environment that was lethal to the community in its ancestral form, thus averting biomass collapse in a deteriorating environment. Laboratory evidence suggests that community rescue is most likely in high-biomass communities that have previously experienced moderate doses of sublethal stress. We assessed this result under more natural conditions, in a mesocosm experiment with phytoplankton communities exposed to the ubiquitous herbicide glyphosate. We tested whether community biomass and prior herbicide exposure would facilitate community rescue after severe contamination. We found that prior exposure to glyphosate was a very strong predictor of the rescue outcome while high community biomass was not. Furthermore, although glyphosate had negative effects on diversity, it did not influence community composition significantly, suggesting a modest role for genus sorting in this rescue process. Our results expand the scope of community rescue theory to complex ecosystems and confirm that prior stress exposure is a key predictor of rescue.
DOI: 10.6084/m9.figshare.13721107.v1
title: Biomass_Black_Locuts.xlsx

description: This dataset covers all data used for biomass estimation in the related article. The dataset contains: Diameter at breast height (DBH, cm), tree height (H, m), stem dry biomass (SDB, kg), branches dry biomass (BDB, kg) and foliage dry biomass (FDB, kg) of 38 black locust sample trees from 13 stands located in west Poland.
DOI: 10.6084/m9.figshare.14546985.v1
title: MICROPLASTICS INCREASE SOIL PH AND DECREASE MICROBIAL ACTIVITIES AS A FUNCTION OF MICROPLASTIC SHAPE, POLYMER TYPE, AND EXPOSURE TIME- original data.xlsx

description: The data is for a laboratory study in that different secondary microplastics were evaluated to test their effects on soil pH, soil respiration, and enzymatic activities (acid phosphatase, β-D-glucosidase, cellobiosidase, and N-acetyl-β-glucosaminidase). The plastics represented four microplastic shapes: fibers, films, foams, and fragments; and eight polymer types: polyamide (PA), polycarbonate (PC), polyethylene (PE), polyester (PES), polyethylene terephthalate (PET), polypropylene (PP), polystyrene (PS), and polyurethane (PU). The microplastics were mixed with soil (0.4 % w/w) and incubated at 25 ℃ for 31 days. Then, we collected soil samples on the 3rd, 11th, and 31st day.
DOI: 10.6084/m9.figshare.21231869.v1
title: Choptank River salinity, temperature, and pH May-November 2019

description: Daily measurements of salinity, temperature, and pH recorded using a YSI Pro 1030 handheld meter for the study location in the Choptank River, MD (38° 35' 35.556'' N, 76° 7' 43.932'' W) from May through November 2019. <br>