cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7735813
title: Correlation of viral loads in disease transmission could affect early estimates of the reproduction number

description: This dataset accompanies the an article titled, 'Correlation of viral loads in disease transmission could affect early estimates of the reproduction number', by T. Harris et al. which can be found at https://arxiv.org/abs/2211.08673. Abstract: Early estimates of the transmission properties of a newly emerged pathogen are critical to an effective public health response, and are often based on limited outbreak data. Here, we use simulations to investigate how correlations between the viral load of cases in transmission chains can affect estimates of these fundamental transmission properties. Our computational model simulates a disease transmission mechanism in which the viral load of the infector at the time of transmission influences the infectiousness of the infectee. These correlations in transmission pairs produce a population-level convergence process during which the distributions of initial viral loads in each subsequent generation converge to a steady state. We find that outbreaks arising from index cases with low initial viral loads give rise to early estimates of transmission properties that could be misleading. These findings demonstrate the potential for transmission mechanisms to affect estimates of the transmission properties of newly emerged viruses in ways that could be operationally significant to a public health response. Contents of this dataset include: Model code - including experiments (python3) Estimation code (R) Code used for figure production (python3 & R) Raw data produced from Experiments 1-3 and presented in the text (.csv & .Rdata) See 'README.md' in main upload folder for more information
DOI: 10.6084/m9.figshare.22281025
title: Enhancing the interpretability of a GIS method with ordered weighted averaging (GIS-OWA): A case study on ecological constraints on urban sprawl

description: The integrated application of geographic information systems (GIS) and ordered weighted averaging (OWA) has attracted significant attention because it reflects the preference to risk in decision-making and controls the trade-off between indicators. However, the GIS-OWA algorithm still lacks effective indicators to assist evaluators in judging which key inputs affect decision-making scenarios at specific spatial scales. We thus propose location contribution (LOCC) and attribute contribution (ATTRC) to explore the interpretability of the GIS-OWA algorithm at the pixel-to-local scale. Taking the fast developing Golden Triangle urban agglomeration of Southern Fujian Province of China as the study area, the new approach identifies the contribution of ecological factors from GIS-OWA-based ecological constraints. Results show that the aggregation phenomenon of ecological factors in the OWA-ranked layers provides a novel perspective for interpreting the principle of spatial heterogeneity discussed by Anselin and Goodchild. The set of key factors observed at the pixel scale indicates that spatially stratified ordered heterogeneity is ubiquitous. The key LOCCs and ATTRCs for cells in different OWA-equivalence areas differ significantly, and the set of key ATTRCs observed in a specific window suggests that the attribution of the GIS-OWA algorithm is feasible. LOCC and ATTRC efficiently probe key inputs to the GIS-OWA algorithm.
DOI: 10.6084/m9.figshare.22281025.v1
title: Enhancing the interpretability of a GIS method with ordered weighted averaging (GIS-OWA): A case study on ecological constraints on urban sprawl

description: The integrated application of geographic information systems (GIS) and ordered weighted averaging (OWA) has attracted significant attention because it reflects the preference to risk in decision-making and controls the trade-off between indicators. However, the GIS-OWA algorithm still lacks effective indicators to assist evaluators in judging which key inputs affect decision-making scenarios at specific spatial scales. We thus propose location contribution (LOCC) and attribute contribution (ATTRC) to explore the interpretability of the GIS-OWA algorithm at the pixel-to-local scale. Taking the fast developing Golden Triangle urban agglomeration of Southern Fujian Province of China as the study area, the new approach identifies the contribution of ecological factors from GIS-OWA-based ecological constraints. Results show that the aggregation phenomenon of ecological factors in the OWA-ranked layers provides a novel perspective for interpreting the principle of spatial heterogeneity discussed by Anselin and Goodchild. The set of key factors observed at the pixel scale indicates that spatially stratified ordered heterogeneity is ubiquitous. The key LOCCs and ATTRCs for cells in different OWA-equivalence areas differ significantly, and the set of key ATTRCs observed in a specific window suggests that the attribution of the GIS-OWA algorithm is feasible. LOCC and ATTRC efficiently probe key inputs to the GIS-OWA algorithm.
DOI: 10.6084/m9.figshare.22277761
title: Moeller Polani Common Concepts RSIF 2023.zip

description: ZIP file containing the collected data some of which were used to generate the images for the paper: "Emergence of Common Concepts, Symmetries, and Conformity in Agent Groups ? an Information-Theoretic Model". <br> The ZIP file is split into parts. On a Unix machine, these can be recombined together with <br> 'cat [partaa partbb ...] &gt; RCIF.zip' <br> (where the quotes just delimit the command and the square brackets indicate the files to be concatenated). <br> The unzipped file expands into a directory structure which is explained in more detail the top-level file 'readme.md'. The figures correspond to the one in the paper. Additional figures not in the paper are included, and they follow the same naming pattern. <br> Each image has its original data set, plotting script and generation pipeline. <br> (Note that the collection contains additional data)
DOI: 10.6084/m9.figshare.22277761.v1
title: Moeller Polani Common Concepts RSIF 2023.zip

description: ZIP file containing the collected data some of which were used to generate the images for the paper: "Emergence of Common Concepts, Symmetries, and Conformity in Agent Groups ? an Information-Theoretic Model". <br> The ZIP file is split into parts. On a Unix machine, these can be recombined together with <br> 'cat [partaa partbb ...] &gt; RCIF.zip' <br> (where the quotes just delimit the command and the square brackets indicate the files to be concatenated). <br> The unzipped file expands into a directory structure which is explained in more detail the top-level file 'readme.md'. The figures correspond to the one in the paper. Additional figures not in the paper are included, and they follow the same naming pattern. <br> Each image has its original data set, plotting script and generation pipeline. <br> (Note that the collection contains additional data)
DOI: 10.34740/kaggle/dsv/5181176
title: NSE-Scripts-Data
DOI: 10.5281/zenodo.7742942
title: CHHIM Microbiome fastqs

description: Fastq files for the 16S microbiome analysis
DOI: 10.5281/zenodo.7742941
title: CHHIM Microbiome fastqs

description: Fastq files for the 16S microbiome analysis
DOI: 10.5281/zenodo.7743290
title: CHHIM R files

description: R code for analysis of microbiome data
DOI: 10.5281/zenodo.7743289
title: CHHIM R files

description: R code for analysis of microbiome data
DOI: 10.5281/zenodo.7743294
title: CHHIM metadata

description: Metadata file for analysis of CHHIM microbiome dataset
DOI: 10.5281/zenodo.7743293
title: CHHIM metadata

description: Metadata file for analysis of CHHIM microbiome dataset
DOI: 10.6084/m9.figshare.22292686
title: scRNA

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292683
title: scRNAdata2

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292674
title: scRNAdata1

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.5281/zenodo.7743332
title: CHHIM Metabolomics raw data & metadata

description: Raw metabolomics data for CHHIM & corresponding meta data
DOI: 10.5281/zenodo.7743331
title: CHHIM Metabolomics raw data & metadata

description: Raw metabolomics data for CHHIM & corresponding meta data
DOI: 10.6084/m9.figshare.22292665
title: scRNAcluster

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292665.v1
title: scRNAcluster

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292659
title: scRNA data3

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292650
title: TCGA data

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292716
title: Dataset_Zhao et al, PNAS Nexus, pgad070.xlsx

description: This is the dataset for the paper '<strong>Pelagic microplastics in the North Pacific subtropical gyre: a prevalent anthropogenic component of the particulate organic carbon pool' </strong><em>PNAS Nexus</em>, pgad070, https://doi.org/10.1093/pnasnexus/pgad070
DOI: 10.5281/zenodo.7668518
title: Data for "Femtosecond Symmetry Breaking and Coherent Relaxation of Methane Cations via X-ray Spectroscopy"

description: This repository contains all the data and scripts needed to obtain the figures reported in the manuscript. The experimental data are processed using Matlab R2022a.
DOI: 10.5281/zenodo.7668519
title: Experimental data for "Femtosecond Symmetry Breaking and Coherent Relaxation of Methane Cations via X-ray Spectroscopy"

description: This repository contains all the data and scripts needed to obtain the figures reported in the manuscript (see title). The experimental data are processed using Matlab R2022a.
DOI: 10.5281/zenodo.7743367
title: Data for "Femtosecond Symmetry Breaking and Coherent Relaxation of Methane Cations via X-ray Spectroscopy"

description: This repository contains all the data and scripts needed to obtain the figures reported in the manuscript. The experimental data are processed using Matlab R2022a.
DOI: 10.6084/m9.figshare.22292749
title: identifiers of GDC data

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.22292749.v1
title: identifiers of GDC data

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.5281/zenodo.6806459
title: Virome diversity of Hyalomma dromedarii ticks collected from camels in the United Arab Emirates

description: Viruses are important components of the microbiome of ticks. Ticks are capable of transmitting several serious viral diseases to humans and animals. Hitherto, the composition of viral communities in <em>Hyalomma dromedarii</em> ticks associated with camels in the United Arab Emirates (UAE) remains unexplored. The purpose of this study was to characterize the RNA virome diversity in male and female <em>H. dromedarii</em> ticks collected from camels in Al Ain, UAE.<strong> </strong>We collected ticks, extracted and sequenced RNA, using Illumina (NovaSeq 6000) and Oxford Nanopore (MinION).<strong> </strong>From the total generated sequencing reads, 180,559 (~0.35 %) and 197,801 (~0.34 %) reads were identified as virus-related reads in male and female tick samples respectively. Taxonomic assignment of the viral sequencing reads was accomplished based on bioinformatic analyses. Further, viral reads were classified into 39 viral families. Poxiviridae, Phycodnaviridae, Phenuiviridae, Mimiviridae, and Polydnaviridae were the most abundant families in the tick viromes. Notably, we assembled the genomes of three RNA viruses, which were placed by phylogenetic analyses in clades that included the Bole tick virus.<strong> </strong>Overall, this study attempts to elucidate the RNA virome of ticks associated with camels in the UAE and the results obtained from this study improve the knowledge of the diversity of viruses in <em>H. dromedarii</em> ticks.
description: This data is supplementary to the following published research paper: www.doi.org/10.14202/vetworld.2023.439-448, Perveen N, Kundu B, Sudalaimuthuasari N, Al-Maskari RS, Muzaffar SB, and Al-Deeb MA (2023) Virome diversity of Hyalomma dromedarii ticks collected from camels in the United Arab Emirates, Veterinary World, 16(3): 439–448.
DOI: 10.5281/zenodo.6806458
title: Virome diversity of Hyalomma dromedarii ticks collected from camels in the United Arab Emirates

description: Viruses are important components of the microbiome of ticks. Ticks are capable of transmitting several serious viral diseases to humans and animals. Hitherto, the composition of viral communities in <em>Hyalomma dromedarii</em> ticks associated with camels in the United Arab Emirates (UAE) remains unexplored. The purpose of this study was to characterize the RNA virome diversity in male and female <em>H. dromedarii</em> ticks collected from camels in Al Ain, UAE.<strong> </strong>We collected ticks, extracted and sequenced RNA, using Illumina (NovaSeq 6000) and Oxford Nanopore (MinION).<strong> </strong>From the total generated sequencing reads, 180,559 (~0.35 %) and 197,801 (~0.34 %) reads were identified as virus-related reads in male and female tick samples respectively. Taxonomic assignment of the viral sequencing reads was accomplished based on bioinformatic analyses. Further, viral reads were classified into 39 viral families. Poxiviridae, Phycodnaviridae, Phenuiviridae, Mimiviridae, and Polydnaviridae were the most abundant families in the tick viromes. Notably, we assembled the genomes of three RNA viruses, which were placed by phylogenetic analyses in clades that included the Bole tick virus.<strong> </strong>Overall, this study attempts to elucidate the RNA virome of ticks associated with camels in the UAE and the results obtained from this study improve the knowledge of the diversity of viruses in <em>H. dromedarii</em> ticks.
description: This data is supplementary to the following published research paper: www.doi.org/10.14202/vetworld.2023.439-448, Perveen N, Kundu B, Sudalaimuthuasari N, Al-Maskari RS, Muzaffar SB, and Al-Deeb MA (2023) Virome diversity of Hyalomma dromedarii ticks collected from camels in the United Arab Emirates, Veterinary World, 16(3): 439–448.
DOI: 10.17909/12rr-2a67
title: SMACSJ0723 IMAGE and GRISM

description: The dataset used in Li et al. 2023 to measure mass-metallicity relation of dwarf galaxis at the cosmic noon.  DOI created by Xiaojing Lin in Mar 17, 2023.
DOI: 10.6084/m9.figshare.22232875
title: N-terminal region of Drosophila melanogaster Argonaute2 forms amyloid-like aggregates

description: Supporting data.
DOI: 10.6084/m9.figshare.22232875.v1
title: N-terminal region of Drosophila melanogaster Argonaute2 forms amyloid-like aggregates

description: Supporting data.
DOI: 10.5519/qd.up7t5ck2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.t730goaz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7743531
title: CeeMI Data

description: Signaling network data used to better understand single cell signaling capabilities. To be used in conjunction with https://github.com/adgoetz186/Cell_signalling_information.
DOI: 10.5281/zenodo.7743530
title: CeeMI Data

description: Signaling network data used to better understand single cell signaling capabilities. To be used in conjunction with https://github.com/adgoetz186/Cell_signalling_information.
DOI: 10.6084/m9.figshare.21398964
title: Frugivorous bird foraging is related to pericarp color and ultraviolet reflectance in fruiting shrub species

description: Seed dispersal by birds is critical for regeneration and maintenance of plant populations. Birds likely rely on both visible light of human’s eyes and ultraviolet (UV) reflectance when foraging for fruit. Fruit color is suggested to be an honest signal that allows birds to assess nutrient status. We assessed UV reflectance and pericarp color as honest indicators of fruit maturity in three fruiting shrubs in Osaka, Japan. We measured sugar content and light spectra in the fruits of <i>Eurya japonica</i>, <i>Ligustrum obtusifolium</i> and <i>Ligustrum japonicum</i> and observed birds foraging on target individuals. We found that a model including fruit color and UV reflection as explanatory variables best explained variation in fruit sugar content in <i>E. japonica</i> and <i>L. obtusifolium</i>, whereas UV reflection alone best explained variation in <i>L. japonicum</i>. Next, we assessed relationships between fruit color and bird foraging behavior and found strong temporal correlation between active foraging and peak sugar content. Bird foraging behavior differed among the three shrub species. This is probably because fruit consumption by birds is not entirely dependent on fruit color or sugar content of the fruits. It must depend on various factors such as the presence of fruiting neighbors of conspecific or heterospecific plants and seasonal variation of population-level or community-level fruit abundance.
DOI: 10.6084/m9.figshare.21398964.v1
title: Frugivorous bird foraging is related to pericarp color and ultraviolet reflectance in fruiting shrub species

description: Seed dispersal by birds is critical for regeneration and maintenance of plant populations. Birds likely rely on both visible light of human’s eyes and ultraviolet (UV) reflectance when foraging for fruit. Fruit color is suggested to be an honest signal that allows birds to assess nutrient status. We assessed UV reflectance and pericarp color as honest indicators of fruit maturity in three fruiting shrubs in Osaka, Japan. We measured sugar content and light spectra in the fruits of <i>Eurya japonica</i>, <i>Ligustrum obtusifolium</i> and <i>Ligustrum japonicum</i> and observed birds foraging on target individuals. We found that a model including fruit color and UV reflection as explanatory variables best explained variation in fruit sugar content in <i>E. japonica</i> and <i>L. obtusifolium</i>, whereas UV reflection alone best explained variation in <i>L. japonicum</i>. Next, we assessed relationships between fruit color and bird foraging behavior and found strong temporal correlation between active foraging and peak sugar content. Bird foraging behavior differed among the three shrub species. This is probably because fruit consumption by birds is not entirely dependent on fruit color or sugar content of the fruits. It must depend on various factors such as the presence of fruiting neighbors of conspecific or heterospecific plants and seasonal variation of population-level or community-level fruit abundance.
DOI: 10.6084/m9.figshare.21407319.v4
title: A Prolonged Wait: The Impact of COVID-19 on Elective surgeries in India

description: This is the database of sudy conducted to analyse the impact of COVID 19 on elective surgeries.
DOI: 10.23729/c2d0ade1-cb3d-4dea-a48b-dbb5654bb662
title: Stable Water 18O and 2H Isotope Data of Snowfall, Snowpack and Snowmelt Water

description: The folder associated to this file contains datasets of snowfall, snowpack and snowmelt water 18O and 2H isotopes for 2019 and 2020. All data were collected for the Pallas Research Catchment, Finland. These datasets were used in the research article, published in 'Water Resources Research' journal. The tile of the article is 'The Spatiotemporal Variability of Snowpack and Snowmelt Water 18O and 2H Isotopes in a Subarctic Catchment'. It is accessible from the DOI: 10.1029/2022WR033101. The folder contains 6 excel files and each excel file consists of several sheets
DOI: 10.34740/kaggle/dsv/5181695
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.22269604.v2
title: ASSOCIATION OF ELEVATED IL-6 WITH POOR GLYCEMIC CONTROL IN PERIODONTITIS PATIENTS

description: This data depository includes a ethical clearance letter and the tabulated raw data collected during the course of the study which was later statistically analyzed to derive results and draft the article.
DOI: 10.6084/m9.figshare.22283719
title: GEX.RAW.h5ad

description: GEX dataset with raw gene expression count of 6000 selected HVGs. (excluding two studies with controlled access of sequencing data)
DOI: 10.6084/m9.figshare.22292866
title: E ICPMS Data Warm and Cold.xlsx

description: The raw data classified between periods needed for analysis
DOI: 10.6084/m9.figshare.22292866.v1
title: E ICPMS Data Warm and Cold.xlsx

description: The raw data classified between periods needed for analysis
DOI: 10.6084/m9.figshare.22292875
title: ROS DATA Warm.xlsx

description: The outcome of the imputed data for the period stated
DOI: 10.6084/m9.figshare.22292875.v1
title: ROS DATA Warm.xlsx

description: The outcome of the imputed data for the period stated
DOI: 10.6084/m9.figshare.22292869
title: ROS DATA Cold.xlsx

description: Data imputation results for the cold period
DOI: 10.6084/m9.figshare.22292869.v1
title: ROS DATA Cold.xlsx

description: Data imputation results for the cold period
DOI: 10.6084/m9.figshare.22292884
title: Raw data and Imputed Data

description: The Raw data and the imputed data is presented for all metals analysed
DOI: 10.6084/m9.figshare.22292884.v1
title: Raw data and Imputed Data

description: The Raw data and the imputed data is presented for all metals analysed
DOI: 10.6084/m9.figshare.20653908
title: Share dataset about Tumor

description: The share dataset about gene and isoforms.
DOI: 10.23670/irj.2023.129.70.1
title: Гематологические показатели коров

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.77.1
title: Сравнительные показатели морфофункционального состояния у испытуемых контрольной (кг) (n = 14) и экспериментальной (кг) (n = 18) групп до эксперимента

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.69.1
title: The simple list of enterprise groups with the multi-divisional structure

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.70.2
title: Биохимические и иммунологические показатели коров

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.71.1
title: Метрологическая характеристика определения суммы дубильных веществ в корнях Rhéum palmátum в пересчете на катехин

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.72.1
title: Обработка семян католитом при силе тока 5, 10 и 35 А

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.73.1
title: Параметры линейных регрессионных уравнений оценки состояния деревьев в ЗЛН юга Сибири

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.71.2
title: Метрологическая характеристика определения антраценпроизводных в корнях Rhéum palmátum в пересчете на франгула-эмодин

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.73.2
title: Уравнения прогноза состояния деревьев в ЗЛН

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.72.3
title: Результаты исследования проростков после 5 суток проращивания

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023
DOI: 10.23670/irj.2023.129.71.3
title: Метрологическая характеристика определения органических кислот в корнях Rhéum palmátum в пересчете на яблочную кислоту

description: Международный научно-исследовательский журнал, Выпуск 3 (129) 2023