cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.97jfc9
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Morus notabilis C.K.Schneid."
 ]
}

 The dataset includes 71 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001694-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dg36nk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Schizosaccharomyces osmophilus Brysch-Herzb., Tobiás, M.Seidel, R.Wittmann, Reinh.Fischer, Dlauchy & G.Péter"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001695-250214102907787/datasets/export for details.
DOI: 10.15468/dl.xumgr4
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Gossypium arboreum L."
 ]
}

 The dataset includes 483 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001696-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3cwae7
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Scedosporium apiospermum Sacc. ex Castell. & Chalm."
 ]
}

 The dataset includes 144 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001697-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgqmrc
title: Occurrence Download

description: A dataset containing 30424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Motacilla alba Linnaeus, 1758",
 "Year 2020-2024"
 ]
}

 The dataset includes 30424 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001698-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmx2yu
title: Occurrence Download

description: A dataset containing 2350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Fusarium proliferatum (Matsush.) Nirenberg ex Gerlach & Nirenberg"
 ]
}

 The dataset includes 2350 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001699-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69zubj
title: Occurrence Download

description: A dataset listing the 493 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-72.14686 -37.88114,-71.72281 -37.88114,-71.72281 -37.56257,-71.72281 -37.42059,-72.14686 -37.42059,-72.14686 -37.88114))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 493 records were derived from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009426-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25150707
title: Additional file 2 of Pro-inflammatory feedback loops define immune responses to pathogenic Lentivirus infection

description: Additional file 2: Table S6. Differential ligand-receptor pairs in monocyte CCC at the timepoint of maximal perturbation relative to baseline.
DOI: 10.6084/m9.figshare.25150707.v1
title: Additional file 2 of Pro-inflammatory feedback loops define immune responses to pathogenic Lentivirus infection

description: Additional file 2: Table S6. Differential ligand-receptor pairs in monocyte CCC at the timepoint of maximal perturbation relative to baseline.
DOI: 10.6084/m9.figshare.26677157
title: Additional file 5 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 5: Table S1. Antibodies used in the study
DOI: 10.6084/m9.figshare.26677157.v1
title: Additional file 5 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 5: Table S1. Antibodies used in the study
DOI: 10.6084/m9.figshare.26677160
title: Additional file 6 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 6: Table S2. Canonical markers list
DOI: 10.6084/m9.figshare.26677160.v1
title: Additional file 6 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 6: Table S2. Canonical markers list
DOI: 10.6084/m9.figshare.26677163
title: Additional file 7 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 7: Table S3. Information about quality controls for scRNA-seq. This table provides information regarding the quality control in our scRNA-seq for all six samples, and shows the data of Pre-QC (before performing quality control) and Post-QC (after performing quality control)
DOI: 10.6084/m9.figshare.26677163.v1
title: Additional file 7 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 7: Table S3. Information about quality controls for scRNA-seq. This table provides information regarding the quality control in our scRNA-seq for all six samples, and shows the data of Pre-QC (before performing quality control) and Post-QC (after performing quality control)
DOI: 10.6084/m9.figshare.26677166
title: Additional file 8 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 8: Table S4. Marker gene list. A list of marker genes from the cell clusters
DOI: 10.6084/m9.figshare.26677166.v1
title: Additional file 8 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 8: Table S4. Marker gene list. A list of marker genes from the cell clusters
DOI: 10.6084/m9.figshare.26677169
title: Additional file 9 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 9: Table S5. Two differential gene modules and PAM trajectory. A list of genes associated with two co-expression modules of DEGs along the PAM pseudotemporal trajectory (Fig. 4B)
DOI: 10.6084/m9.figshare.26677169.v1
title: Additional file 9 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 9: Table S5. Two differential gene modules and PAM trajectory. A list of genes associated with two co-expression modules of DEGs along the PAM pseudotemporal trajectory (Fig. 4B)
DOI: 10.6084/m9.figshare.26677172
title: Additional file 10 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 10: Table S6. Differentially expressed genes between Trem2l° IM and Trem2hi IM from bulk-seq
DOI: 10.6084/m9.figshare.26677172.v1
title: Additional file 10 of Dynamics of host immune responses and a potential function of Trem2hi interstitial macrophages in Pneumocystis pneumonia

description: Supplementary Material 10: Table S6. Differentially expressed genes between Trem2l° IM and Trem2hi IM from bulk-seq
DOI: 10.6084/m9.figshare.26677232
title: Additional file 10 of Single-cell analysis reveals alterations in cellular composition and cell-cell communication associated with airway inflammation and remodeling in asthma

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.26677232.v1
title: Additional file 10 of Single-cell analysis reveals alterations in cellular composition and cell-cell communication associated with airway inflammation and remodeling in asthma

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.25150606
title: Additional file 1 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 1. Excel-file with information on the Lombardy poplar trees samples used for whole genome bisulfite sequencing (WGBS) in the two methylome experiments.
DOI: 10.6084/m9.figshare.25150606.v1
title: Additional file 1 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 1. Excel-file with information on the Lombardy poplar trees samples used for whole genome bisulfite sequencing (WGBS) in the two methylome experiments.
DOI: 10.6084/m9.figshare.25150718
title: Additional file 2 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 2. CSV-file with mapping statistics, bisulfite conversion rate and percentages of cytosine methylation for each DNA-sample analyzed by whole genome bisulfite sequencing (WGBS). (processed data).
DOI: 10.6084/m9.figshare.25150718.v1
title: Additional file 2 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 2. CSV-file with mapping statistics, bisulfite conversion rate and percentages of cytosine methylation for each DNA-sample analyzed by whole genome bisulfite sequencing (WGBS). (processed data).
DOI: 10.6084/m9.figshare.26677256
title: Additional file 3 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 3. CSV-file with the total list of GO terms that were enriched in DMRs. DMRs were identified between groups by grouping the WGBS data from 16 individual Lombardy poplar ramets by their corresponding parent-of-origin (ortet ‘HUN4’ located in Hungary, ‘ITS3’ in Italy, ‘SPC1’ in Spain and ‘UKD2’ in the UK).
DOI: 10.6084/m9.figshare.26677256.v1
title: Additional file 3 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 3. CSV-file with the total list of GO terms that were enriched in DMRs. DMRs were identified between groups by grouping the WGBS data from 16 individual Lombardy poplar ramets by their corresponding parent-of-origin (ortet ‘HUN4’ located in Hungary, ‘ITS3’ in Italy, ‘SPC1’ in Spain and ‘UKD2’ in the UK).
DOI: 10.6084/m9.figshare.26677262
title: Additional file 5 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 5. CSV-file with the raw data of the bud set observations in the common garden experiment.
DOI: 10.6084/m9.figshare.26677262.v1
title: Additional file 5 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 5. CSV-file with the raw data of the bud set observations in the common garden experiment.
DOI: 10.6084/m9.figshare.26677265
title: Additional file 6 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 6. HTML-file with the R source codes to reproduce the results of the bud set analysis.
DOI: 10.6084/m9.figshare.26677265.v1
title: Additional file 6 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 6. HTML-file with the R source codes to reproduce the results of the bud set analysis.
DOI: 10.6084/m9.figshare.26677268
title: Additional file 7 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 7. A text-file representing the Snakefile (i.e., a readable Python-based workflow) including the different steps and rules of the bioinformatics of the WGBS data analyses.
DOI: 10.6084/m9.figshare.26677268.v1
title: Additional file 7 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 7. A text-file representing the Snakefile (i.e., a readable Python-based workflow) including the different steps and rules of the bioinformatics of the WGBS data analyses.
DOI: 10.6084/m9.figshare.26677271
title: Additional file 8 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 8. RMD-file with the code to reproduce the analyses to identify differential methylated predefined regions.
DOI: 10.6084/m9.figshare.26677271.v1
title: Additional file 8 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 8. RMD-file with the code to reproduce the analyses to identify differential methylated predefined regions.
DOI: 10.6084/m9.figshare.26677274
title: Additional file 9 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 9. R-script with the code to reproduce the clustering and visualizing of the GO enrichment results.
DOI: 10.6084/m9.figshare.26677274.v1
title: Additional file 9 of Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

description: Additional file 9. R-script with the code to reproduce the clustering and visualizing of the GO enrichment results.
DOI: 10.6084/m9.figshare.25150719
title: Additional file 2 of Fever-like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

description: Additional file 2: Table S1. Differentially expressed genes in S. aureus.
DOI: 10.6084/m9.figshare.25150719.v1
title: Additional file 2 of Fever-like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

description: Additional file 2: Table S1. Differentially expressed genes in S. aureus.
DOI: 10.6084/m9.figshare.26677277.v1
title: Additional file 3 of Fever-like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

description: Additional file 3: Table S2. Differentially expressed genes in P. aeruginosa.
DOI: 10.6084/m9.figshare.26677277
title: Additional file 3 of Fever-like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

description: Additional file 3: Table S2. Differentially expressed genes in P. aeruginosa.
DOI: 10.25573/data.22782470
title: Chapter 11 - Thirty years of pollen rain sampling in the BCI 50-ha plot - Table S2 - Pollen and spore counts by taxa and year

description: Table S2. Pollen and spore counts by taxa and year.Online Supplementary Material forMoreno, J. E., and C. Jaramillo. 2024. Thirty Years of Pollen Rain Sampling in the BCI 50-ha Plot. In The First 100 Years of Research on Barro Colorado Island: Plant and Ecosystem Science, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880694The data are provided in the form of both an Excel file and a tab-delimited text file.Citation for dataset:Moreno, J. E., and C. Jaramillo. 2024. Chapter 11 - Thirty years of pollen rain sampling in the BCI 50-ha plot - Table S2 - Pollen and spore counts by taxa and year. Smithsonian Figshare. https://doi.org/10.25573/data.22782470
DOI: 10.25573/data.22782470.v1
title: Chapter 11 - Thirty years of pollen rain sampling in the BCI 50-ha plot - Table S2 - Pollen and spore counts by taxa and year

description: Table S2. Pollen and spore counts by taxa and year.Online Supplementary Material forMoreno, J. E., and C. Jaramillo. 2024. Thirty Years of Pollen Rain Sampling in the BCI 50-ha Plot. In The First 100 Years of Research on Barro Colorado Island: Plant and Ecosystem Science, ed. H. C. Muller-Landau and S. J. Wright: Smithsonian Institution Scholarly Press. https://doi.org/10.5479/si.26880694The data are provided in the form of both an Excel file and a tab-delimited text file.Citation for dataset:Moreno, J. E., and C. Jaramillo. 2024. Chapter 11 - Thirty years of pollen rain sampling in the BCI 50-ha plot - Table S2 - Pollen and spore counts by taxa and year. Smithsonian Figshare. https://doi.org/10.25573/data.22782470
DOI: 10.15468/dl.nbgw7m
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is one of (T. L. Hankinson Vertebrate Museum (EMU) Mammal Collection, Mammalogy Collection - Royal Ontario Museum, NMNH Extant Specimen Records (USNM, US), The mammals collection (ZM) of the Muséum national d'Histoire naturelle (MNHN - Paris), RBINS Mammal collection, RBINS DaRWIN, Registro de Fauna Silvestre en el Inventario Nacional Forestal y de Fauna Silvestre-SERFOR, Perú, Observation.org, Nature data from around the World)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lagidium viscacia (Molina, 1782)"
 ]
}

 The dataset includes 38 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026817-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwkprc
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Allobates zaparo (Silverstone, 1976)"
 ]
}

 The dataset includes 71 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026818-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcgmnd
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is Registro de Fauna Silvestre en el Inventario Nacional Forestal y de Fauna Silvestre-SERFOR, Perú",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Saimiri sciureus (Linnaeus, 1758)"
 ]
}

 The dataset includes 34 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026819-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrp4uh
title: Occurrence Download

description: A dataset containing 65059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "Geometry POLYGON((-55.92592 -27.21172,-56.0331 -27.3725,-55.95654 -27.57156,-55.82639 -27.82421,-55.76514 -27.98499,-55.68858 -28.11514,-55.56608 -28.28358,-55.07609 -28.05389,-54.31048 -27.69405,-53.49127 -27.05094,-53.57549 -26.67579,-53.49893 -26.23939,-53.62908 -25.81831,-53.80518 -25.53503,-53.99658 -25.40488,-54.50954 -25.45847,-54.73922 -25.54269,-54.74688 -25.88721,-54.92297 -26.23174,-55.00719 -26.53798,-55.29046 -26.83657,-55.92592 -27.21172))",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 65059 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026812-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afntan
title: Occurrence Download

description: A dataset containing 60145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is Field Museum of Natural History (Botany) Seed Plant Collection",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 60145 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026816-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2cdsv
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Coccoloba ruiziana Lindau"
 ]
}

 The dataset includes 154 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026820-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8w9aq
title: Occurrence Download

description: A dataset containing 73349 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((8.70185 59.29993,12.7999 59.29993,12.7999 61.71947,8.70185 61.71947,8.70185 59.29993))",
 "HasGeospatialIssue is false",
 "Year 2023-2024"
 ]
}

 The dataset includes 73349 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026821-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zaers3
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Allobates zaparo (Silverstone, 1976)"
 ]
}

 The dataset includes 71 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026822-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvspme
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "DatasetKey is Observation.org, Nature data from around the World",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lagidium viscacia (Molina, 1782)"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026823-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dr4evj
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amazilia fimbriata (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 20 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026824-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.