cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.s6ejj3
title: Occurrence Download

description: A dataset containing 568822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is one of (Acer platanoides L., Adelges tsugae Annand, 1924, Agrilus planipennis Fairmaire, 1888, Alliaria petiolata (M.Bieb.) Cavara & Grande, Channa argus (Cantor, 1842), Crocodylus niloticus Laurenti, 1768, Dreissena polymorpha (Pallas, 1771), Faxonius rusticus (Girard, 1852), Frangula alnus Mill., Heracleum mantegazzianum Sommier & Levier, Heracleum sphondylium L., Hydrocharis morsus-ranae L., Impatiens glandulifera Royle, Kali tragus (L.) Scop., Lissachatina fulica (Bowdich, 1822), Lycorma delicatula (White, 1845), Myriophyllum spicatum L., Phragmites australis subsp. australis, Potamogeton crispus L., Pterois volitans (Linnaeus, 1758), Pueraria lobata (Willd.) Ohwi, Python bivittatus Kuhl, 1820, Reynoutria japonica Houtt., Reynoutria sachalinensis (F.Schmidt) Nakai, Reynoutria ×bohemica Chrtek & Chrtková, Rhamnus cathartica L., Rhinella marina (Linnaeus, 1758), Stratiotes aloides L., Trapa natans L., Vincetoxicum nigrum (L.) Moench, Vincetoxicum rossicum (Kleopow) Barbar.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 568822 records from 566 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016665-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtljz8
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium deliciosum Piper"
 ]
}

 The dataset includes 270 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003919-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jv8qj
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "EventDate is less than or equal to 2023-10-25",
 "EventDate is greater than or equal to 2023-10-18",
 "DecimalLatitude is greater than or equal to 35",
 "DecimalLatitude is less than or equal to 72",
 "DecimalLongitude is greater than or equal to -86",
 "DecimalLongitude is less than or equal to -47"
 ]
}

 The dataset includes 44 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027218-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmrb3l
title: Occurrence Download

description: A dataset containing 1404 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Flemingia strobilifera (L.) W.T.Aiton"
 ]
}

 The dataset includes 1404 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003919-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gwc55
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample)",
 "DatasetKey is LACM Vertebrate Collection",
 "TaxonKey is Urocyon littoralis (Baird, 1858)"
 ]
}

 The dataset includes 153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053833-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmsktq
title: Occurrence Download

description: A dataset containing 495 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agkistrodon bilineatus Günther, 1863"
 ]
}

 The dataset includes 495 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003919-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbz9ud
title: Occurrence Download

description: A dataset containing 1453 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliotropium strigosum Willd."
 ]
}

 The dataset includes 1453 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005739-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l7mdza
title: Occurrence Download

description: A dataset containing 762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ursus maritimus Phipps, 1774",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 762 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003920-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhhsxg
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample)",
 "DatasetKey is LACM Vertebrate Collection",
 "TaxonKey is Urocyon littoralis (Baird, 1858)"
 ]
}

 The dataset includes 153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053831-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1ylo9a
title: Occurrence Download

description: A dataset containing 8124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthonomus"
 ]
}

 The dataset includes 8124 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003920-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az6u5a
title: Occurrence Download

description: A dataset containing 1325620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((17.89542 59.25845,18.21632 59.25845,18.21632 59.40178,17.89542 59.40178,17.89542 59.25845))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "Year 1000-2023"
 ]
}

 The dataset includes 1325620 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005745-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mfeex
title: Occurrence Download

description: A dataset containing 49270 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus coccifera L."
 ]
}

 The dataset includes 49270 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003920-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vx7wmv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chile",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Month is March",
 "VerbatimScientificName is craspedacusta sowerbii",
 "Year 2020-2020"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148507-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsxa59
title: Occurrence Download

description: A dataset containing 40962 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cosmos bipinnatus Cav.)"
 ]
}

 The dataset includes 40962 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016672-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87ska4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schoenoplectus chuanus (Tang & F.T.Wang) S.Yun Liang & S.R.Zhang"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004197-241107131044228/datasets/export for details.
DOI: 10.15468/dl.cjv3wx
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "TaxonKey is Kengyilia grandiglumis (Keng & S.L.Chen) J.L.Yang, C.Yen & B.R.Baum"
 ]
}

 The dataset includes 42 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004198-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.972622
title: Pollen data of sediment core GeoB20628-1

description: To better understand the vegetation evolution since the last deglaciation in southwestern Africa, we present pollen and spores data of 70 samples from marine sediment core GeoB20628-1 which was retrieved from the southern coast of South Africa, east of the Breede River mouth, during RV METEOR cruise M123 (34°33.880′ S, 21°05.670′ E) in 71 m water depth. The pollen and spores assemblage exhibits a vegetation shift among various fynbos throughout the record, including restioid fynbos, ericaceous fynbos, asteraceous fynbos and renosterveld during different periods. The neophyte taxa (Pinus spp.) which occurred regularly during the last 1300 years, together with a vegetation shift from restioid fynbos to renosterveld suggest an influence of both climate and human activities on the landscape.
DOI: 10.15468/dl.tm2bf8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schoenoplectus chuanus (Tang & F.T.Wang) S.Yun Liang & S.R.Zhang"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004199-241107131044228/datasets/export for details.
DOI: 10.1594/pangaea.972888
title: Digital elevation model and orthophoto of Freya Glacier 2021

description: In July 2021 we surveyed the surface of Freya Glacier (Northeast Greenland). On 29th and 31st July 2021, we used a UAV (DJI Phantom 4 RTK) to obtain overlapping image series of the glacier surface. On 29th July, we photographed 80% of the glacier surface (lower part) and finished the drone flights on 31st of July. On 28th and 29th of July 2021, we surveyed ~100 mainly artificial GCPs on the glacier surface using a differential GNSS receiver and a base station. During the survey, surface ablation between 28th and 31st July was less than 0.2 m. Using a structure from motion approach, we could reconstruct 95% of the glacier surface with a very high level of detail and vertical accuracy. The DEM of the glacier has a horizontal resolution of 1m and the elevation has an RMSE at the check points of 0.18 m. The DEM and the orthofoto are projected to UTM (zone 27N, epsg:32627) and to orthometric heights (egm96). The data also contain the glacier outline of Freya Glacier in 2021 as a shapefile.
DOI: 10.15468/dl.7fxs9c
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Kengyilia kokonorica (Keng) J.L.Yang, C.Yen & B.R.Baum"
 ]
}

 The dataset includes 45 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004200-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27641592
title: viral contig.fasta

description: This file includes the viral contigs.
DOI: 10.6084/m9.figshare.27641592.v1
title: viral contig.fasta

description: This file includes the viral contigs.
DOI: 10.6084/m9.figshare.24494584.v1
title: Klf9 is essential for cardiac mitochondrial homeostasis

description: Mitochondrial dynamics and mitophagy are intimately linked physiological processes that are essential for cardiac homeostasis. Here we show that cardiac Klf9 is dysregulated in human and rodent cardiomyopathy. Young adult global and cardiac-specific Klf9-deficient mice displayed hypertrophic cardiomyopathy, and exhibited mitochondrial disarray and fragmentation in cardiomyocytes. Besides, mitochondrial respiratory function was impaired in Klf9-knockout cardiomyocytes, with reduced myocardial ATP levels and elevated ROS. Furthermore, cardiac Klf9 deficiency inhibited mitophagy, thereby leading to accumulation of dysfunctional mitochondria and acceleration of heart failure in response to angiotensin II (ANGII) treatment. In contrast, cardiac-specific Klf9 transgene improved cardiac systolic function via promoting mitophagy in response to ANGII treatment. Molecular mechanism studies indicated that Klf9 knockout decreased the expression of PGC-1α and its target genes involved in mitochondrial energy metabolism. Moreover, Klf9 directly controlled the expression of Mfn2, thereby regulating mitochondrial dynamics and mitophagy. Finally, we found that AAV-mediated Mfn2 rescue in Klf9-CKO heart improved cardiac mitochondrial and systolic function. Thus, Klf9 integrates cardiac energy metabolism, mitochondrial dynamics and mitophagy. Modulating Klf9 activity may have therapeutic potential in the treatment of heart failure.
DOI: 10.6084/m9.figshare.24494584
title: Klf9 is essential for cardiac mitochondrial homeostasis

description: Mitochondrial dynamics and mitophagy are intimately linked physiological processes that are essential for cardiac homeostasis. Here we show that cardiac Klf9 is dysregulated in human and rodent cardiomyopathy. Young adult global and cardiac-specific Klf9-deficient mice displayed hypertrophic cardiomyopathy, and exhibited mitochondrial disarray and fragmentation in cardiomyocytes. Besides, mitochondrial respiratory function was impaired in Klf9-knockout cardiomyocytes, with reduced myocardial ATP levels and elevated ROS. Furthermore, cardiac Klf9 deficiency inhibited mitophagy, thereby leading to accumulation of dysfunctional mitochondria and acceleration of heart failure in response to angiotensin II (ANGII) treatment. In contrast, cardiac-specific Klf9 transgene improved cardiac systolic function via promoting mitophagy in response to ANGII treatment. Molecular mechanism studies indicated that Klf9 knockout decreased the expression of PGC-1α and its target genes involved in mitochondrial energy metabolism. Moreover, Klf9 directly controlled the expression of Mfn2, thereby regulating mitochondrial dynamics and mitophagy. Finally, we found that AAV-mediated Mfn2 rescue in Klf9-CKO heart improved cardiac mitochondrial and systolic function. Thus, Klf9 integrates cardiac energy metabolism, mitochondrial dynamics and mitophagy. Modulating Klf9 activity may have therapeutic potential in the treatment of heart failure.
DOI: 10.6084/m9.figshare.25283710.v1
title: High-Purity Carbon Monoxide Production via Photothermal Formic Acid Decomposition over Fluorite ZrO2

description: DATA
DOI: 10.6084/m9.figshare.25283710
title: High-Purity Carbon Monoxide Production via Photothermal Formic Acid Decomposition over Fluorite ZrO2

description: DATA
DOI: 10.15468/dl.djhd37
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schoenoplectus chuanus (Tang & F.T.Wang) S.Yun Liang & S.R.Zhang"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004201-241107131044228/datasets/export for details.
DOI: 10.6084/m9.figshare.25011044.v1
title: PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic Leukemia

description: The epigenetic landscape plays a critical role in the onset and evolution of various malignancies, but its therapeutic utility remains underutilized. Glucocorticoids are an essential part of many multi-agent treatment regimens for lymphoid malignancies. However, the emergence of glucocorticoid resistance is a significant barrier to cure, which is in part due to epigenetic alterations, including aberrant chromatin accessibility and hypermethylation at lymphocyte-specific glucocorticoid-response elements (GREs). To gain a deeper understanding of regulatory mechanisms leading to these epigenetic alterations, we conducted a multi-omics study, including chromosome conformation capture sequencing (HiC), to examine changes in the 3D genome structure following the in vivo treatment of acute lymphoblastic leukemia (ALL) patient-derived xenografts (PDXs) with glucocorticoid. We found that glucocorticoid treatment led to distinct patterns of topologically associated domains (TADs) in glucocorticoid sensitive compared to resistant PDXs. Furthermore, we show that these TADs were primed by the development-related pioneer transcription factor PU.1, which extensively interacts with the glucocorticoid receptor (GR) exclusively in glucocorticoid-sensitive ALL PDXs. An integrative analysis of rapid immunoprecipitation mass spectrometry of endogenous protein (RIME) and ChIP-seq revealed that PU.1 binding was associated with lymphocyte-specific activation of GREs and GRE-interacting super-enhancers. The PU.1-associated TADs modulated epigenetic marks, and particularly the eviction of PU.1 promoted GR binding and the expression of signature genes, including BIM, ZBTB16 and RASA1, mediating glucocorticoid-induced apoptosis in ALL. These findings were phenocopied using a PU.1 inhibitor DB2313 to restore glucocorticoid sensitivity in ALL. Taken together, this study identified a new epigenetic pathway integrating PU.1 priming and PU.1-GR interaction which ultimately leads to PU.1 eviction in ALL. This pathway provides the first link between the activity of a lineage-specific transcription factor and epigenetic modulators mediating the response to glucocorticoids and thus offers a new avenue to translate fundamental epigenetic research into the clinic.
DOI: 10.6084/m9.figshare.25011044
title: PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic Leukemia

description: The epigenetic landscape plays a critical role in the onset and evolution of various malignancies, but its therapeutic utility remains underutilized. Glucocorticoids are an essential part of many multi-agent treatment regimens for lymphoid malignancies. However, the emergence of glucocorticoid resistance is a significant barrier to cure, which is in part due to epigenetic alterations, including aberrant chromatin accessibility and hypermethylation at lymphocyte-specific glucocorticoid-response elements (GREs). To gain a deeper understanding of regulatory mechanisms leading to these epigenetic alterations, we conducted a multi-omics study, including chromosome conformation capture sequencing (HiC), to examine changes in the 3D genome structure following the in vivo treatment of acute lymphoblastic leukemia (ALL) patient-derived xenografts (PDXs) with glucocorticoid. We found that glucocorticoid treatment led to distinct patterns of topologically associated domains (TADs) in glucocorticoid sensitive compared to resistant PDXs. Furthermore, we show that these TADs were primed by the development-related pioneer transcription factor PU.1, which extensively interacts with the glucocorticoid receptor (GR) exclusively in glucocorticoid-sensitive ALL PDXs. An integrative analysis of rapid immunoprecipitation mass spectrometry of endogenous protein (RIME) and ChIP-seq revealed that PU.1 binding was associated with lymphocyte-specific activation of GREs and GRE-interacting super-enhancers. The PU.1-associated TADs modulated epigenetic marks, and particularly the eviction of PU.1 promoted GR binding and the expression of signature genes, including BIM, ZBTB16 and RASA1, mediating glucocorticoid-induced apoptosis in ALL. These findings were phenocopied using a PU.1 inhibitor DB2313 to restore glucocorticoid sensitivity in ALL. Taken together, this study identified a new epigenetic pathway integrating PU.1 priming and PU.1-GR interaction which ultimately leads to PU.1 eviction in ALL. This pathway provides the first link between the activity of a lineage-specific transcription factor and epigenetic modulators mediating the response to glucocorticoids and thus offers a new avenue to translate fundamental epigenetic research into the clinic.
DOI: 10.6084/m9.figshare.26763253
title: A tripartite synergistic optimization strategy for zinc-iodine batteries

description: The data for the Figures in this paper is attached as excel format.
DOI: 10.6084/m9.figshare.26763253.v1
title: A tripartite synergistic optimization strategy for zinc-iodine batteries

description: The data for the Figures in this paper is attached as excel format.
DOI: 10.6084/m9.figshare.25584597.v1
title: A stealthy neural recorder for the study of behaviour in primates

description: The source data for the paper titled 'A stealthy neural recorder for the study of behaviour in primates' comprises all the data presented in the figures within the paper.
DOI: 10.6084/m9.figshare.25757580
title: Physical confinement selectively favours bacterial growth based on cell shape

description: Data for Figures
DOI: 10.6084/m9.figshare.25757580.v1
title: Physical confinement selectively favours bacterial growth based on cell shape

description: Data for Figures
DOI: 10.6084/m9.figshare.26820589.v1
title: High orientated Bi2Te3-based film leads to high performance planar thermoelectric cooling device for hot spot elimination

description: High orientated Bi2Te3-based film leads to high performance planar thermoelectric cooling device for hot spot elimination
DOI: 10.6084/m9.figshare.26820589
title: High orientated Bi2Te3-based film leads to high performance planar thermoelectric cooling device for hot spot elimination

description: High orientated Bi2Te3-based film leads to high performance planar thermoelectric cooling device for hot spot elimination
DOI: 10.6084/m9.figshare.27165984
title: Mapping the global variation in the efficiency of ocean alkalinity enhancement for carbon dioxide removal

description: Here we provide the link (https://beta.source.coop/repositories/cworthy/oae-efficiency-atlas/) to the repository that contains the results from a large number of simulated Ocean Alkalinity Enhancement (OAE) experiments using the Community Earth System Model (CESM). These experiments are intended to explore the temporal and spatial impact of regionally confined alkalinity perturbations on the biogeochemical carbon system in the global ocean. The details of these simulations are available in Zhou et al. (2024).