cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13507020.v1
title: Additional file 8 of Transcriptome analysis and differential gene expression profiling of two contrasting quinoa genotypes in response to salt stress

description: Additional file 8: Table S8. List of the core genes set involved in quinoa response to salt stress.
DOI: 10.6084/m9.figshare.13507023
title: Additional file 9 of Transcriptome analysis and differential gene expression profiling of two contrasting quinoa genotypes in response to salt stress

description: Additional file 9: Table S9. GO terms significantly enriched amongst the core DEGs in quinoa.
DOI: 10.6084/m9.figshare.13507029
title: Additional file 1 of Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants

description: Additional file 1: Table S1. Full list of annotated variants found in the GISAID dataset. Table S2. Matrix of variant-country association, counts normalized by mutations per thousand isolates. Table S3. Epitope prediction binding via NetMHC4 analysis. Table S4. Epitope mutation fold-change ranking via IEDB analysis. Table S5. BepiPred results of B-cell epitope prediction for Wild Type, S477N and N439K Spike sequences.
DOI: 10.6084/m9.figshare.13507029.v1
title: Additional file 1 of Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants

description: Additional file 1: Table S1. Full list of annotated variants found in the GISAID dataset. Table S2. Matrix of variant-country association, counts normalized by mutations per thousand isolates. Table S3. Epitope prediction binding via NetMHC4 analysis. Table S4. Epitope mutation fold-change ranking via IEDB analysis. Table S5. BepiPred results of B-cell epitope prediction for Wild Type, S477N and N439K Spike sequences.
DOI: 10.17632/4h6dw2b7sd.1
title: fMRI data for "BOLD differences normally attributed to inhibitory control predict symptoms, not task-directed inhibitory control in ADHD"

description: see README file
DOI: 10.6084/m9.figshare.13232801
title: Supplementary data for "organoid cultures derived from patients with papillary thyroid cancer"

description: Supplementary figures and tables for the paper "organoid cultures derived from patients with papillary thyroid cancer"
DOI: 10.6084/m9.figshare.13232801.v1
title: Extended data sets and supplemental materials for Organoid cultures derived from patients with papillary thyroid cancer

description: Extended data sets and supplemental materials for Organoid cultures derived from patients with papillary thyroid cancer
DOI: 10.25919/cs5b-9f15
title: Parkes observations for project P1061 semester 2020OCTS_06

description: Fast Radio Bursts (FRBs) have extremely high brightness temperature, owing to their short-duration and prominent flux from the distant universe. The studies on emission mechanism of FRBs have met bottleneck for a long time unless a complete spectrum is measured. We propose to observe a new repeating FRB source, FRB 180301, using the Parkes ultra-wide-bandwidth receiver (UWL). This source was initially found by Parkes multibeam receivers and confirmed repetition by the FAST telescope. The source is still active until Jun 2020 from FAST follow-ups. It’s an ideal opportunity to capture comprehensive spectral information using the Parkes UWL. We demonstrate that the beam coverage is feasible and 30-hr observations are required for at least one detection.
DOI: 10.5281/zenodo.4404888
title: Increased sCD163 and sCD14 plasmatic levels and depletion of peripheral blood pro-inflammatory monocytes, myeloid and plasmacytoid dendritic cells in patients with severe COVID-19 pneumonia

description: <strong>Background: </strong>Emerging evidence argues that monocytes, circulating innate immune cells, are principal players in COVID-19 pneumonia. The study aimed to investigate the role of soluble (s)CD163 and sCD14 plasmatic levels in predicting disease severity and characterize peripheral blood monocytes and dendritic cells (DCs), in patients with COVID-19 pneumonia (COVID-19 subjects). <strong>Methods:</strong> On admission, in COVID-19 subjects sCD163 and sCD14 plasmatic levels, and peripheral blood monocyte and DC subsets were compared to healthy donors (HDs). According to clinical outcome, COVID-19 subjects were divided into ARDS and non-ARDS groups. <strong>Results:</strong> Compared to HDs, COVID-19 subjects showed higher sCD163 (p&lt;0.0001) and sCD14 (p&lt;0.0001) plasmatic levels. We observed higher sCD163 plasmatic levels in the ARDS group compared to the non-ARDS one (p=0.002). The cut-off for sCD163 plasmatic level greater than 2032 ng/ml was predictive of disease severity (AUC: 0.6786, p=0.0022; sensitivity 56.7% [CI: 44.1-68.4] specificity 73.8% [CI: 58.9-84.7]). Positive correlation between plasmatic levels of sCD163, LDH and IL-6 and between plasmatic levels of sCD14, D-dimer and ferritin were found. Compared to HDs, COVID-19 subjects showed lower percentages of non-classical (p=0.0012) and intermediate monocytes (p=0.0447), slanDCs (p&lt;0.0001), myeloid DCs (mDCs, p&lt;0.0001) and plasmacytoid DCs (pDCs, p=0.0014). Compared to the non-ARDS group, the ARDS group showed lower percentages of non-classical monocytes (p=0.0006), mDCs (p=0.0346) and pDCs (p=0.0492). <strong>Conclusions:</strong> The increase in sCD163 and sCD14 plasmatic levels, observed on hospital admission in COVID-19 subjects, especially in those who developed ARDS, and the correlations of these monocyte/macrophage activation markers with typical inflammatory markers of COVID-19 pneumonia, underline their potential use to assess the risk of progression of the disease. In an early stage of the disease, the assessment of sCD163 plasmatic levels could have clinical utility in predicting the severity of COVID-19 pneumonia.
DOI: 10.5281/zenodo.4404887
title: Increased sCD163 and sCD14 plasmatic levels and depletion of peripheral blood pro-inflammatory monocytes, myeloid and plasmacytoid dendritic cells in patients with severe COVID-19 pneumonia

description: <strong>Background: </strong>Emerging evidence argues that monocytes, circulating innate immune cells, are principal players in COVID-19 pneumonia. The study aimed to investigate the role of soluble (s)CD163 and sCD14 plasmatic levels in predicting disease severity and characterize peripheral blood monocytes and dendritic cells (DCs), in patients with COVID-19 pneumonia (COVID-19 subjects). <strong>Methods:</strong> On admission, in COVID-19 subjects sCD163 and sCD14 plasmatic levels, and peripheral blood monocyte and DC subsets were compared to healthy donors (HDs). According to clinical outcome, COVID-19 subjects were divided into ARDS and non-ARDS groups. <strong>Results:</strong> Compared to HDs, COVID-19 subjects showed higher sCD163 (p&lt;0.0001) and sCD14 (p&lt;0.0001) plasmatic levels. We observed higher sCD163 plasmatic levels in the ARDS group compared to the non-ARDS one (p=0.002). The cut-off for sCD163 plasmatic level greater than 2032 ng/ml was predictive of disease severity (AUC: 0.6786, p=0.0022; sensitivity 56.7% [CI: 44.1-68.4] specificity 73.8% [CI: 58.9-84.7]). Positive correlation between plasmatic levels of sCD163, LDH and IL-6 and between plasmatic levels of sCD14, D-dimer and ferritin were found. Compared to HDs, COVID-19 subjects showed lower percentages of non-classical (p=0.0012) and intermediate monocytes (p=0.0447), slanDCs (p&lt;0.0001), myeloid DCs (mDCs, p&lt;0.0001) and plasmacytoid DCs (pDCs, p=0.0014). Compared to the non-ARDS group, the ARDS group showed lower percentages of non-classical monocytes (p=0.0006), mDCs (p=0.0346) and pDCs (p=0.0492). <strong>Conclusions:</strong> The increase in sCD163 and sCD14 plasmatic levels, observed on hospital admission in COVID-19 subjects, especially in those who developed ARDS, and the correlations of these monocyte/macrophage activation markers with typical inflammatory markers of COVID-19 pneumonia, underline their potential use to assess the risk of progression of the disease. In an early stage of the disease, the assessment of sCD163 plasmatic levels could have clinical utility in predicting the severity of COVID-19 pneumonia.
DOI: 10.6084/m9.figshare.13507077
title: INDIAN COIN CURRENCY IMAGES.zip

description: Coin recognition is done by most of the application by considering the physical properties of coin like color, shape, thickness, radius, edge parameters. This automatic identification and recognition of coin is done by slot machine, vending machine, also at various bank’s related machines. Indian currency is of two types coin currency and paper currency. Both of them have various approaches for recognition and identification. Many of the researcher are working on this coin recognition techniques: 1) Fast Fourier Transform 2) Discrete Cosine transformation 3) Edge Detection 4) Gabor Wavelets for image subtraction 5) Tree-Structured Wavelet Transform (TWT) 6) Ant Colony Optimization (ACO) 7) Spiral Decomposition of Image (SDAI) 8) Artificial neural networks 9) Scale-Invariant Feature Transform I have the collection of Indian coins in image .jpg format.
DOI: 10.6084/m9.figshare.13487256
title: data and code

description: data and code
DOI: 10.6084/m9.figshare.13487256.v10
title: data and code

description: data and code
DOI: 10.6084/m9.figshare.13487256.v9
title: data and code

description: data and code
DOI: 10.6084/m9.figshare.13507131
title: Figures for "A method to simulate the migration and accumulation of petroleum with analogue modeling”

description: The process of migration and accumulation of oil and gas under the ground is a research hotpot for a long time. This process has a very long geological period and is difficult to observe directly. Therefore, it is necessary to simulate the migration and accumulation of oil and gas by means of experiments. This paper developed an experimental method for modelling the petroleum migration in the formation and structure, combined the fluid migration, analogue modeling and industrial CT scanning. We have used the NaI solution and the white oil to simulate the underground water and the petroleum, the fine quartz sand, glass bead, silica powder and brown corundum to simulate the brittle crust formation. We have measured some parameters of the materials to verify their suitability. We conducted a sandbox model of saturated NaI solution and an along-strike basal velocity discontinuity, then a simple anticline was formed. Oil was released continuously at a slow rate from an orifice under one limb of the anticline. The experimental result showed that the oil first migrated vertically through the fault zone until it reached the top of the fault zone and then the oil migrated laterally along the core of the anticline, forming a reservoir in buoyancy and capillary force. The experimental results are similar to the accumulation law of the Anjihai anticline and Santai anticline. This gives the reliability of our experiment setup and materials, also, gives the hope for future study in more complex geological structures and syntectonic petroleum migration. The high-resolution figures for this paper has been presented here.
DOI: 10.6084/m9.figshare.13507131.v1
title: Figures for "A method to simulate the migration and accumulation of petroleum with analogue modeling”

description: The process of migration and accumulation of oil and gas under the ground is a research hotpot for a long time. This process has a very long geological period and is difficult to observe directly. Therefore, it is necessary to simulate the migration and accumulation of oil and gas by means of experiments. This paper developed an experimental method for modelling the petroleum migration in the formation and structure, combined the fluid migration, analogue modeling and industrial CT scanning. We have used the NaI solution and the white oil to simulate the underground water and the petroleum, the fine quartz sand, glass bead, silica powder and brown corundum to simulate the brittle crust formation. We have measured some parameters of the materials to verify their suitability. We conducted a sandbox model of saturated NaI solution and an along-strike basal velocity discontinuity, then a simple anticline was formed. Oil was released continuously at a slow rate from an orifice under one limb of the anticline. The experimental result showed that the oil first migrated vertically through the fault zone until it reached the top of the fault zone and then the oil migrated laterally along the core of the anticline, forming a reservoir in buoyancy and capillary force. The experimental results are similar to the accumulation law of the Anjihai anticline and Santai anticline. This gives the reliability of our experiment setup and materials, also, gives the hope for future study in more complex geological structures and syntectonic petroleum migration. The high-resolution figures for this paper has been presented here.
DOI: 10.6084/m9.figshare.13507140
title: Raw dataset

description: Raw data from experiments
DOI: 10.5281/zenodo.4405135
title: Proceedings of The International Research Education & Training Center

description: JOURNAL OF SOCIAL RESEARCH & BEHAVIORAL SCIENCES
DOI: 10.6084/m9.figshare.13507152
title: Co-evolution of the Eastern Paleo-Tethys since the Late Devonian along a ~4000 km belt: Implications from the magmatism in Eastern Myanmar

description: This dataset comprises of analytical data of zircon U-Pb-Hf-O isotope, zircon trace elements, whole-rock major and trace elements, whole-rock Sr-Nd isotope, and mineral chemical compositions. This dataset also includes parameters for geochemical modeling and compiled geochronological data of Eastern Paleo-Tethys belt.
DOI: 10.6084/m9.figshare.13507152.v1
title: Co-evolution of the Eastern Paleo-Tethys since the Late Devonian along a ~4000 km belt: Implications from the magmatism in Eastern Myanmar

description: This dataset comprises of analytical data of zircon U-Pb-Hf-O isotope, zircon trace elements, whole-rock major and trace elements, whole-rock Sr-Nd isotope, and mineral chemical compositions. This dataset also includes parameters for geochemical modeling and compiled geochronological data of Eastern Paleo-Tethys belt.
DOI: 10.5517/ccdc.csd.cc26xcn5
title: CCDC 2053057: Experimental Crystal Structure Determination

description: Related Article: Ferdinand Belaj, Martina E. Judmaier, Nadia C. Mösch-Zanetti|2020|CSD Communication|||
DOI: 10.5281/zenodo.4405132
title: Compound extremes WRF simulations

description: All the data are available in the daily timestep. The extension with irrigation-on and irrigation-off represent two different simulations.<br> All variable details;<br> SLP- Sea Level Pressure<br> SKINTEMP- Land Surface Temperature<br> T2- Air Temperature<br> LHF - Latent Heat Flux<br> SHF - Sensible Heat Flux<br> LHFSHF - Latent Heat Flux + Sensible Heat Flux<br> SH - Specific Humidity<br> PBLH - Planetary Boundary Layer Height<br> SMOIS - Soil Moisture (0-60 cm)<br> VPD - Vapour Pressure Deficit<br> vq_Integrated uq_Integrated - u and v Component of Vertically Integrated Moisture
DOI: 10.5281/zenodo.4405131
title: Compound extremes WRF simulations

description: All the data are available in the daily timestep. The extension with irrigation-on and irrigation-off represent two different simulations.<br> All variable details;<br> SLP- Sea Level Pressure<br> SKINTEMP- Land Surface Temperature<br> T2- Air Temperature<br> LHF - Latent Heat Flux<br> SHF - Sensible Heat Flux<br> LHFSHF - Latent Heat Flux + Sensible Heat Flux<br> SH - Specific Humidity<br> PBLH - Planetary Boundary Layer Height<br> SMOIS - Soil Moisture (0-60 cm)<br> VPD - Vapour Pressure Deficit<br> vq_Integrated uq_Integrated - u and v Component of Vertically Integrated Moisture
DOI: 10.6084/m9.figshare.13507197.v1
title: Rdata_Weight_Fitness_LastAnalyses.new.txt

description: This is the dataset for Gerber et al. 2021. Population Density and Temperature Influence the Return on MaternalInvestment in Wild House Mice. Frontiers in Ecology and Evolution.
DOI: 10.6084/m9.figshare.13507197.v2
title: LifehistoryDataHouseMice

description: This is the dataset for Gerber et al. 2021. Population Density and Temperature Influence the Return on MaternalInvestment in Wild House Mice. Frontiers in Ecology and Evolution.
DOI: 10.5281/zenodo.4395040
title: HeliPaD: the Heliand Parsed Database

description: This corpus contains all 5,968 lines of the C manuscript of the Old Saxon <em>Heliand</em>, a gospel harmony written in alliterative verse, using the Sievers (1878) edition. Compared to the standard Behaghel critical edition, this one has the advantages for linguistic research that a) it does not conflate the different forms found in different manuscripts, b) it is not as heavily emended, and c) it is now in the public domain. The corpus is a UTF-8 plain text file designed to be searched using the program CorpusSearch 2, with the standard extension .psd, broadly following the format of the Penn Corpora of Historical English and related projects (IcePaHC, Early New High German Parsed Corpus, MCVF). It is annotated on a number of levels: Textual and metrical (page in manuscript, page in edition, line number, caesura) Lemmatization Parts of speech and morphology Syntactic parsing The total size of the corpus is 46,067 words (not including punctuation and code).
description: Full manual online at http://www.chlg.ac.uk/helipad/.
DOI: 10.5281/zenodo.4395039
title: HeliPaD: the Heliand Parsed Database

description: This corpus contains all 5,968 lines of the C manuscript of the Old Saxon <em>Heliand</em>, a gospel harmony written in alliterative verse, using the Sievers (1878) edition. Compared to the standard Behaghel critical edition, this one has the advantages for linguistic research that a) it does not conflate the different forms found in different manuscripts, b) it is not as heavily emended, and c) it is now in the public domain. The corpus is a UTF-8 plain text file designed to be searched using the program CorpusSearch 2, with the standard extension .psd, broadly following the format of the Penn Corpora of Historical English and related projects (IcePaHC, Early New High German Parsed Corpus, MCVF). It is annotated on a number of levels: Textual and metrical (page in manuscript, page in edition, line number, caesura) Lemmatization Parts of speech and morphology Syntactic parsing The total size of the corpus is 46,067 words (not including punctuation and code).
description: Full manual online at http://www.chlg.ac.uk/helipad/.
DOI: 10.5281/zenodo.4314415
title: Large flux-mediated coupling in hybrid electromechanical system with a transmon qubit

description: The dataset contains the script and measured data to reproduce the figures shown in the publication titled "Large flux-mediated coupling in hybrid electromechanical system with a transmon qubit" written by Tanmoy Bera, Sourav Majumder, Sudhir Kumar Sahu and Vibhor Singh
DOI: 10.5281/zenodo.4314414
title: Large flux-mediated coupling in hybrid electromechanical system with a transmon qubit

description: The dataset contains the script and measured data to reproduce the figures shown in the publication titled "Large flux-mediated coupling in hybrid electromechanical system with a transmon qubit" written by Tanmoy Bera, Sourav Majumder, Sudhir Kumar Sahu and Vibhor Singh
DOI: 10.5281/zenodo.4405106
title: Dataset of the WP7 Cranfeld

description: C-scan dataset of impact damages on final demonstrator panel. This dataset contains ultrasonic full-waveform Phased Array (PA) data that was acquired during the experimental assessment of impact damages on final demonstrator panel conducted by Cranfield at Upatras AML lab in the context of project CompInnova: An Advanced Methodology for the Inspection and Quantification of Damage on Aerospace Composites and Metals using an Innovative Approach (H2020 FET OPEN, Grant Agreement No. 665238). The C-scan data are in raw CSV format and processed C-scan images in Tiff image format using algorithms developed at Cranfield for processing the raw CSV format. Also, a document on how to visualise raw data files in MS excel is also included. This C-scan data is acquired on the curved stiffened composite panel by using 10 MHz Phased Array (PA) transducer which is a part of PA module developed at Cranfield involving a novel elastomer wedge and novel mist couplant delivery for uniform distribution of couplant. The data were used in the deliverable D7.3.
DOI: 10.6084/m9.figshare.13507224
title: S1 Table.pdf

description: S1 Table
DOI: 10.5281/zenodo.4405105
title: Dataset of the WP7 Cranfeld

description: C-scan dataset of impact damages on final demonstrator panel. This dataset contains ultrasonic full-waveform Phased Array (PA) data that was acquired during the experimental assessment of impact damages on final demonstrator panel conducted by Cranfield at Upatras AML lab in the context of project CompInnova: An Advanced Methodology for the Inspection and Quantification of Damage on Aerospace Composites and Metals using an Innovative Approach (H2020 FET OPEN, Grant Agreement No. 665238). The C-scan data are in raw CSV format and processed C-scan images in Tiff image format using algorithms developed at Cranfield for processing the raw CSV format. Also, a document on how to visualise raw data files in MS excel is also included. This C-scan data is acquired on the curved stiffened composite panel by using 10 MHz Phased Array (PA) transducer which is a part of PA module developed at Cranfield involving a novel elastomer wedge and novel mist couplant delivery for uniform distribution of couplant. The data were used in the deliverable D7.3.
DOI: 10.6084/m9.figshare.13507224.v1
title: S1 Table.pdf

description: S1 Table
DOI: 10.5519/qd.lvg9hmz4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (18 records)
DOI: 10.5281/zenodo.4166780
title: Data accompanying the book review "A new general dictionary of Ume Saami"

description: This is a set of tables illustrating the differences between two dictionaries of Ume Saami (Schlachter 1958 and Barruk 2018). Headwords with the initial <em>v</em> from both dictionaries have been aligned to show the common and differing shares of vocabulary. A further analysis is published in the book review (Kuokkala 2020) in Finnisch-Ugrische Forschungen (doi.org/10.33339/fuf.99934). The data from Schlachter 1958 has been converted into the modern orthography with a script found at doi.org/10.5281/zenodo.4162535 and published in its entirety at doi.org/10.5281/zenodo.4163676.
description: {"references": ["Barruk, Henrik 2018: B\u00e1hkuogirjjie. Ubmejes\u00e1mien\u2013d\u00e1ruon, D\u00e1ruon\u2013ubmejes\u00e1mien = Ordbok. Umesamisk\u2013svensk, Svensk\u2013umesamisk. Ume\u00e5.", "Schlachter, Wolfgang 1958: W\u00f6rterbuch des Waldlappendialekts von Mal\u00e5 und Texte zur Ethnographie. Lexica Societatis Fenno-Ugricae XIV. Helsinki: Suomalais-Ugrilainen Seura.", "Kuokkala, Juha 2020: \"A New General Dictionary of Ume Saami\". Finnisch-Ugrische Forschungen 2020 (65), 195\u2013201. https://doi.org/10.33339/fuf.99934."]}