cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p6n8f
title: Data from: Primary care management of headaches and how direct-access MRI fits: a qualitative study of UK general practitioners’ views

description: Objectives To develop a better understanding of General Practitioners’
 (GPs) views and experiences of the management of patients with headaches
 and use of direct access magnetic resonance imaging (MRI) scans, and
 observe outcomes of an educational session offered by a GP with a Special
 Interest (GPwSI) to GPs. Design A qualitative study using semi-structured
 interviews, analysed using thematic analysis. A GPwSI in headaches visited
 practices delivering a talk on headache medication, diagnosis, and
 management. Setting Sixteen (16) primary care family practices in South
 London, United Kingdom. Participants Twenty (20) General Practitioners.
 Results Not all GPs were aware of the availability of direct access MRI,
 but all acknowledged having used referral or direct-scans to manage
 patients’ concern about their headaches. A normal scan result helped
 resolve uncertainty for patient and GP, and helped management towards
 discussion of preventative treatment. However, patients with psychological
 and/or severe headache symptoms could not necessarily be reassured. GPs
 reported difficulty interpreting radiology reports, particularly
 incidental abnormalities. Those who received the educational talk gained
 knowledge in diagnosis and medication, improving their confidence in
 management. Conclusions Increased access to imaging, training in headache
 management, addressing physical and psychological symptoms, and
 standardized reporting of scans, may improve GP use of direct access MRI
 in future.
description: GP Interviews
 14.10.17
DOI: 10.5061/dryad.vg81ns6
title: Data from: Effects of mistletoe (Phoradendron villosum) on California oaks

description: Mistletoes are a widespread group of plants often considered to be
 hemiparasitic, having detrimental effects on growth and survival of their
 hosts. We studied the effects of the Pacific mistletoe Phoradendron
 villosum, a member of a largely autotrophic genus, on three species of
 deciduous California oaks. We found no effects of mistletoe presence on
 radial growth or survivorship and detected a significant positive
 relationship between mistletoe and acorn production. This latter result is
 potentially explained by the tendency of Phoradendron villosum to be
 present on larger trees growing in nitrogen-rich soils or, alternatively,
 by a preference for healthy, acorn-producing trees by birds that
 potentially disperse mistletoe. Our results indicate that the negative
 consequences of Phoradendron presence on their hosts are negligible—this
 species resembles an epiphyte more than a parasite—and outweighed by the
 important ecosystem services mistletoe provides.
description: Koenig_etal1,csvAcorn production, DBH, mean mistletoe abundance, and dendrometer growth by tree and year (one record for each year)Koenig_etal1.csvKoenig_etal2.csvMean acorn production, DBH, mean mistletoe abundance, and survival of trees (one record for each tree)Koenig_etal3.csvMean acorn production, DBH, mean mistletoe abundance, and ecological variables (one record for each tree)
DOI: 10.5061/dryad.dh078
title: Data from: Additive effects of pCO2 and temperature on respiration rates of the Antarctic pteropod Limacina helicina antarctica

description: The Antarctic pteropod, Limacina helicina antarctica, is a dominant member
 of the zooplankton in the Ross Sea and supports the vast diversity of
 marine megafauna that designates this region as an internationally
 protected area. Here, we observed the response of respiration rate to
 abiotic stressors associated with global change – environmentally relevant
 temperature (-0.8˚C, 4˚C) and pH treatments reflecting current-day and
 future modeled extremes. Sampling repeatedly over a 14-day period in
 laboratory experiments and using microplate respirometry techniques, we
 found that the metabolic rate of juvenile pteropods increased in response
 to high pCO2 exposure (920 µatm) at -0.8˚C, a near-ambient temperature.
 Similarly, metabolic rate increased when pteropods were exposed
 simultaneously to multiple stressors, elevated pCO2 conditions (960 µatm)
 and a high temperature (+4˚C). Overall, the results showed that pCO2 and
 temperature interact additively to affect metabolic rates in pteropods.
 Furthermore, we found that L. h. antarctica can tolerate acute exposure to
 temperatures far beyond its maximal habitat temperature. Overall, L. h.
 antarctica appears to be susceptible to pH and temperature stress, two
 abiotic stressors which are expected to be especially deleterious for
 ectothermic marine metazoans in polar seas.
description: Pteropod weight data,
 respirometry data, and experimental treatment dataThe raw data, as well as
 the R scripts used to analyzed them. Refer to publication for
 clarification.dryad.zip
DOI: 10.5061/dryad.k67j5
title: Data from: Introducing resprouters to enhance Mediterranean forest resilience: importance of functional traits to select species according to a gradient of pine density

description: Resprouter species are important for Mediterranean ecosystem resilience,
 but they are scarce in landscapes dominated by pioneer pines. Sound
 knowledge of resprouter seedling functional responses and establishment
 success across different pine habitats would help guide forest restoration
 efforts. Four broadleaved resprouter species, that is two shrubs – Arbutus
 unedo and Pistacia terebinthus – and two trees – Fraxinus ornus and Sorbus
 domestica – were planted under an experimentally created gradient of pine
 cover from totally open conditions to dense pine cover. Seedling survival
 and growth were monitored for 5 years. Phenological, physiological and
 morphological traits were measured to gain insight into the mechanisms of
 pine–seedling interaction. Interaction outcomes varied according to
 species identity, pine cover treatment and time. Light-to-moderate pine
 cover induced greater height growth and little or no effects on diameter
 and survival of the two trees. Competition was always detected for shrubs,
 whereas competition and facilitation were noted for trees. Within pine
 stands, negative interactions increased with tree cover, making dense
 stands the most limiting. Interactions were only detectable after 2–3
 years, but increased in intensity with time. Functional responses to
 increasing pine cover indicated a seedling strategy of carbon gain
 optimization in the shade (increased specific leaf area and leaf area,
 decreased leaf dry matter content), particularly in tree species
 seedlings. Increasing pine cover induced higher water stress, but lower
 photochemical stress. The deciduous species had a longer vegetation season
 under pine canopies, whereas the evergreen shrub Arbutus unedo showed a
 lower polycyclism rate and flower production. Synthesis and applications.
 Moderate pine cover facilitates the establishment of deciduous trees at
 the expense of shrubs. This pattern can be attributed to a higher shade
 tolerance of the trees than the shrubs combined with a low tolerance of
 trees to photoinhibition. We therefore recommend using evergreen shrubs
 for the restoration of open land and high-specific-leaf-area deciduous
 trees for pine stand diversification. However, in dense forests, thinning
 is needed to increase light availability prior to seedling introduction.
description: Survival and traits
 according to the different species and treatmentsExcel sheet composed of
 5 tables. Table 1: descriptors used. Table 2: Survival data. Table 3:
 Growth data. Table 4. Phenological data. Table 5. Leaf traits
 dataDataset
 JAE.xlsx
DOI: 10.15468/dl.s6mwvz
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Bee Biology and Systematics Laboratory, Wild bees of Grand Staircase-Escalante National Monument, Illinois Natural History Survey Insect Collection, International Barcode of Life project (iBOL), University of Arizona Insect Collection, LACM Entomology Collection, Insect Species Occurrence Data from Multiple Projects Worldwide with Focus on Bees and Wasps in North America, Washington State University Collection, hymenoptera, Snow Entomological Museum Collection)",
 "TaxonKey is Melissodes lutulentus"
 ]
}

 The dataset includes 440 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000547-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.78vr884
title: Data from: Effects of thermal treatment on the properties of defatted soybean flour and its adhesion to plywood

description: With an attempt to economically and efficiently improve the water
 resistance of defatted soybean flour (DSF)-based wood adhesives, DSF was
 subjected to thermal treatment at various temperatures (65, 80, 95, 110,
 and 125 °C) for 30 minutes. The effects of thermal treatment temperature
 onto the chemical structure, crystalline degree, water-insoluble content,
 and acetaldehyde value of the thermally-treated DSF (T-DSF) was
 investigated. The thermal stabilities and bonding properties of soybean
 adhesives prepared from T-DSF and crosslinker epichlorohydrin-modified
 polyamide (EMPA) were also investigated. Test results indicated that both
 the water insoluble content and acetaldehyde value of T-DSF increased
 after thermal treatment, reaching the highest values of 27.28% and 26.81
 mmol/g, respectively. All plywood bonded with the T-DSF-based adhesive
 withstood a 28 h boiling–dry–boiling accelerated aging treatment, while
 plywood bonded with the DSF-based adhesive delaminated after 4 h of water
 boing, demonstrating the significantly improved water resistance of the
 T-DSF-based adhesives. Related analyses also confirmed that this
 improvement was due to: (i) the formation of insoluble crosslinked
 structures of T-DSF resulting from protein–protein self-crosslinking
 reactions and the protein–carbohydrate Maillard reaction, and (ii)
 increased crosslinking efficiency between T-DSF and crosslinker EMPA owing
 to more T-DSF reactive groups being released after thermal treatment.
description: Original date for
 figures in the manuscriptoriginal date for figures in
 the manuscript.rar
DOI: 10.5061/dryad.758tv
title: Data from: The effect of virus-blocking Wolbachia on male competitiveness of the dengue vector mosquito, Aedes aegypti

description: Background: The bacterial endosymbiont Wolbachia blocks the transmission
 of dengue virus by its vector mosquito Aedes aegypti, and is currently
 being evaluated for control of dengue outbreaks. Wolbachia induces
 cytoplasmic incompatibility (CI) that results in the developmental failure
 of offspring in the cross between Wolbachia-infected males and uninfected
 females. This increases the relative success of infected females in the
 population, thereby enhancing the spread of the beneficial bacterium.
 However, Wolbachia spread via CI will only be feasible if infected males
 are sufficiently competitive in obtaining a mate under field conditions.
 We tested the effect of Wolbachia on the competitiveness of A. aegypti
 males under semi-field conditions. Methodology/Principal Findings: In a
 series of experiments we exposed uninfected females to Wolbachia-infected
 and uninfected males simultaneously. We scored the competitiveness of
 infected males according to the proportion of females producing non-viable
 eggs due to incompatibility. We found that infected males were equally
 successful to uninfected males in securing a mate within experimental
 tents and semi-field cages. This was true for males infected by the benign
 wMel Wolbachia strain, but also for males infected by the virulent wMelPop
 (popcorn) strain. By manipulating male size we found that larger males had
 a higher success than smaller underfed males in the semi-field cages,
 regardless of their infection status. Conclusions/Significance: The
 results indicate that Wolbachia infection does not reduce the
 competitiveness of A. aegypti males. Moreover, the body size effect
 suggests a potential advantage for lab-reared Wolbachia-males during a
 field release episode, due to their better nutrition and larger size. This
 may promote Wolbachia spread via CI in wild mosquito populations and
 underscores its potential use for disease control.
description: Results from
 competitiveness and survival experimentsEgg and females
 viability for experiments 1-3. Females were exposed to uninfected males
 and Wolbachia infected males in tents and semi-field cages. Experiment 1:
 Wolbachia males infected by srtain wMel. Experiment 2: Wolbachia males
 infected by strain wMelPop. Experiment 3: Wolbachia males infected by wMel
 and are larger or smaller than uninfected males. Experiment 4: survival of
 infected/uninfected, small/large males with or without exposure to females
 in small insect cages.Segoli et al.
 NTD.xls
DOI: 10.5061/dryad.44jk0
title: Data from: Acute, delayed and chronic remote ischemic conditioning is associated with downregulation of mTOR and enhanced autophagy signaling

description: Background - Remote ischemic conditioning (RIC), induced by brief periods
 of limb ischemia has been shown to decrease acute myocardial injury and
 chronic responses after acute coronary syndromes. While several signaling
 pathways have been implicated, our understanding of the cardioprotection
 and its underlying mediators and mechanisms remains incomplete. In this
 study we examine the effect of RIC on pro- autophagy signaling as a
 possible mechanism of benefit. Methods and Results - We examined the role
 of autophagy in the acute/first window (15 minutes after RIC),
 delayed/second window (24 hours after RIC) and chronic (24 hours after 9
 days of repeated RIC) phases of cardioprotection. C57BL/6 mice (N=69) were
 allocated to each treatment phase and further stratified to receive RIC,
 induced by four cycles of 5 minutes of limb ischemia followed by 5 minutes
 of reperfusion, or control treatment consisting solely of handling without
 transient ischemia. The groups included, group 1 (1W control), group 2 (1W
 RIC), group 3 (2W control), group 4 (2W RIC), group 5 (3W control) and
 group 6 (3W RIC). Hearts were isolated for assessment of cardiac function
 and infarct size after global ischemia using a Langendorff preparation.
 Infarct size was reduced in all three phases of cardioprotection, in
 association with improvements in post-ischemic left ventricular end
 diastolic pressure (LVEDP) and developed pressure (LVDP) (P&lt;0.05).
 The pattern of autophagy signaling varied; 1W RIC increased AMPK levels
 and decreased the activation of mammalian target of rapamycin (mTOR),
 whereas chronic RIC was associated with persistent mTOR suppression and
 increased levels of autophagosome proteins, LC3II/I and Atg5. Conclusions
 - Cardioprotection following transient ischemia exists in both the acute
 and delayed/chronic phases of conditioning. RIC induces pro-autophagy
 signaling but the pattern of responses varies depending on the phase, with
 the most complete portfolio of responses observed when RIC is administered
 chronically.
description: Autophagy Infarct size
 dataInfarct Size Raw
 DataAutophagy Langendorff
 DataCardiac function
 dataAutophagy Western blot
 data for manuscript
DOI: 10.5061/dryad.td18m
title: Data from: Curves as traits: genetic and environmental variation in mate preference functions

description: Study of the genetic and developmental architecture of mate preferences
 lags behind the study of sexual ornaments. This is in part because of the
 challenges involved in describing mate preferences, which are expressed as
 a function of variation in ornaments. We used the function–valued approach
 to test for genetic and environmental components of variation in female
 mate preferences in Enchenopa treehoppers (Hemiptera: Membracidae). These
 insects communicate with plant–bourne vibrational signals, and offer a
 case study of speciation involving sexual selection and environmental
 change. We focused on female preferences for male signal frequency, the
 most divergent signal trait in Enchenopa. Obtaining complete,
 individual–level descriptions of mate preferences in a full–sib,
 split–family rearing experiment, we document substantial genetic variation
 in mate preference functions. Focusing on traits describing variation in
 the shape of the preference functions, we further document considerable
 broad–sense heritability and evidence of weak genotype × environment
 interaction in most traits. Against the background of recent and rapid
 divergence in Enchenopa, these results indicate potent mechanisms that
 maintain variation and sustain the involvement of mate preferences in
 sexual selection.
description: Eb'Vlent'
 H22011_PrefFunctionsMate preference function
 data used in the analysis. Each female has multiple data points, one for
 each playback stimulus.Eb'Vlent'
 H2_PrefFunctionTraitsTraits describing
 variation in the shape of mate preference functions used in the
 analysis
DOI: 10.5061/dryad.c3j42
title: Data from: Cruising the rain forest floor: butterfly wing shape evolution and gliding in ground effect

description: Flight is a key innovation in the evolutionary success of insects and
 essential to dispersal, territoriality, courtship and oviposition. Wing
 shape influences flight performance and selection likely acts to maximize
 performance for conducting essential behaviours that in turn results in
 evolution of wing shape. As wing shape also contributes to fitness,
 optimal shapes for particular flight behaviours can be assessed with
 aerodynamic predictions and placed in an ecomorphological context.
 Butterflies in the tribe Haeterini (Nymphalidae) are conspicuous members
 of understory faunas in lowland Neotropical forests. Field observations
 indicate that the five genera in this clade differ in flight height and
 behaviour: four use gliding flight at the forest floor level, and one
 utilizes flapping flight above the forest floor. Nonetheless, the
 association of ground level gliding flight behaviour and wing shape has
 never been investigated in this or any other butterfly group. We used
 landmark-based geometric morphometrics to test whether wing shapes in
 Haeterini and their close relatives reflected observed flight behaviours.
 Four genera of Haeterini and some distantly related Satyrinae showed
 significant correspondence between wing shape and theoretical expectations
 in performance tradeoffs that we attribute to selection for gliding in
 ground effect. Forewing shape differed between sexes for all taxa, and
 male wing shapes were aerodynamically more efficient for gliding flight
 than corresponding females. This suggests selection acts differentially on
 male and female wing shapes, reinforcing the idea that sex-specific flight
 behaviours contribute to the evolution of sexual dimorphism. Our study
 indicates that wing shapes in Haeterini butterflies evolved in response to
 habitat-specific flight behaviors, namely gliding in ground effect along
 the forest floor, resulting in ecomorphological partitions of taxa in
 morphospace. The convergent flight behaviour and wing morphology between
 tribes of Satyrinae suggests that the flight environment may offset
 phylogenetic constraints. Overall, this study provides a basis for
 exploring similar patterns of wing shape evolution in other taxa that
 glide in ground effect.
description: Landmark
 coordinateslandmark coordinates and
 voucher numbersLandmark_coordinates_and_voucher_numbers.txt
DOI: 10.15468/dl.9v8kmt
title: Occurrence Download

description: A dataset containing 5120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-83.9322 8.94976,-81.98116 8.94976,-81.98116 13.01562,-83.22724 15.58169,-87.1649 22.22879,-89.35888 21.67235,-102.29733 29.73572,-104.43683 28.62841,-103.66537 22.88264,-91.86224 15.0466,-88.50693 14.54486,-83.9322 8.94976))",
 "TaxonKey is Poecilia mexicana"
 ]
}

 The dataset includes 5120 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000549-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.p57d0
title: Data from: Basic reversal-learning capacity in flies suggests rudiments of complex cognition

description: The most basic models of learning are reinforcement learning models (for
 instance, classical and operant conditioning) that posit a constant
 learning rate; however many animals change their learning rates with
 experience. This process is sometimes studied by reversing an existing
 association between cues and rewards, and measuring the rate of
 relearning. Augmented reversal-learning, where learning rates increase
 with practice, can be an important component of behavioral flexibility;
 and may provide insight into higher cognition. Previous studies of
 reversal-learning in Drosophila have not measured learning rates, but have
 tended to focus on measuring gross deficits in reversal-learning, as the
 ratio of two timepoints. These studies have uncovered a diversity of
 mechanisms underlying reversal-learning, but natural genetic variation in
 this trait has yet to be assessed. We conducted a reversal-learning regime
 on a diverse panel of Drosophila melanogaster genotypes. We found highly
 significant genetic variation in their baseline ability to learn. We also
 found that they have a consistent, and strong (1.3×), increase in their
 learning speed with reversal. We found no evidence, however, that there
 was genetic variation in their ability to increase their learning rates
 with experience. This may suggest that Drosophila have a hitherto
 unrecognized ability to integrate acquired information, and improve their
 decision making; but that their mechanisms for doing so are under strong
 constraints.
description: code_for_foley_et_alAll the code necessary to reproduce the analysis of Foley et al.fly_reversalThe data for Foley et al.
DOI: 10.5061/dryad.qm44d
title: Data from: Antagonistic relationships between intron content and codon usage bias of genes in three mosquito species: functional and evolutionary implications

description: Genome biology of mosquitoes holds potential in developing knowledge-based
 control strategies against vector-borne diseases such as malaria, dengue,
 West Nile Virus and others. Although the genomes of three major vector
 mosquitoes have been sequenced, attempts to elucidate the relationship
 between intron and codon usage bias across species in phylogenetic
 contexts are limited. In this study, we investigated the relationship
 between intron content and codon bias of orthologous genes among three
 vector mosquito species. We found an antagonistic relationship between
 codon usage bias and the intron number of genes in each mosquito species.
 The pattern is further evident among the intronless and the
 intron-containing orthologous genes associated with either low or high
 codon bias among the three species. Furthermore, the co-variance between
 codon bias and intron number has a directional component associated with
 the species phylogeny when compared with other non-mosquito insects. By
 applying a maximum likelihood based continuous regression method, we show
 that codon bias and intron content of genes vary among the insects in a
 phylogeny dependent manner but with no evidence of adaptive radiation or
 species-specific adaptation. We discuss the functional and evolutionary
 significance of antagonistic relationships between intron content and
 codon bias.
description: Number of introns and
 synonymous codon usage order (SCUO) of the 1:1:1 orthologous (n = 6,189)
 genes among Aedes aegypti, Anopheles gambiae and Culex
 quinquefasciatus.DATA.xlsx