cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21950384.v1
title: Equilibrium of DASA-2: 1H NMR in DCM with additives

description: NMR study of equlibrium of DASA-2 in DCM with added acetonitrile, dimethyl sulfoxide, and ethanol (deuterated)
DOI: 10.6084/m9.figshare.1187326.v1
title: Lab 2 - Woodlot Distribution

description: Two different trees were picked in the York University woodlot at random which constituted one pair. Trees in the pair were given a designation, a coefficient that indicated the pair number and the variable "a" or "b" which differentiated the trees in a pair. Using a measuring tape the distance between the two selected trees was measured in meters. Subsequently the diameter at breast height of each tree in the pair was measured using a measuring tape in centimeters. Next the condition of each tree within the pair was determined to be "dead", "living" or "flourishing" and was given a rank "0", "1", or "2" respectfully. The condition was determined by estimating the percent of the tree that was covered in green canopy in respect to the tree size. Trees were given rank "0” if only 0-20% of the tree was covered in green canopy in respect to tree size. Trees were given rank "1" if 20-60% of the tree was covered in green canopy in respect to tree size. Trees were given rank "2" if 60% or more of the tree was covered in green canopy in respect to tree size. This entire process was repeated an additional nine time for a total same size of ten.
DOI: 10.6084/m9.figshare.16823443.v4
title: Consent

description: Consent forms
DOI: 10.6084/m9.figshare.12941786.v1
title: SequencingData

description: "<b>DNA Synthesis for True Random Number Generation"</b><b>Synthesis and sequencing data</b>
DOI: 10.6084/m9.figshare.14936013.v2
title: Whole-Genome Analysis and mutation pattern of SARS-CoV-2 during first and second wave outbreak in Gwangju, Republic of Korea

description: <b>Abstract</b><b>Objective</b>To investigate the specific genomic features and mutation pattern, whole and near-complete SARS-CoV-2 genome sequences were analyzed. <b>Methods</b>Clinical samples were collected from 18 COVID-19–positive patients and subjected to nucleic acid purification. Cell culture analysis was performed to extract various SARS-CoV-2 isolates. Whole-genome analysis was performed using next-generation sequencing, and phylogenetic analyses were conducted to determine genetic diversity of the various SARS-CoV-2 isolates.<b>Results</b>The next-generation sequencing data identified 8 protein-coding regions with 17 mutated proteins. We identified 51 missense point mutations and deletions in 5¢ and 3¢ untranslated regions. The phylogenetic analysis revealed that V and GH are the dominant clades of SARS-CoV-2 circulating in the Gwangju region of South Korea. Moreover, statistical analysis confirmed a significant difference between viral load (P &lt; 0.001) and number of mutations (P &lt; 0.0001) in 2 mutually exclusive SARS-CoV-2 clades which indicates frequent genomic alterations in SARS-CoV-2 in patients with high viral load. <b>Conclusion</b> Our results provide an in-depth analysis of SARS-COV-2 whole genome which we believe, can shed light in the understanding of SARS-COV-2 pathogenesis and mutation pattern which can aid in the development of prevention methods as well as future research into the pathogenesis of SARS-CoV-2 and therapeutic development.
DOI: 10.6084/m9.figshare.28508939.v1
title: Supplemental Table S1

description: Complete ANOVA results
DOI: 10.6084/m9.figshare.14050352.v1
title: The impact of DENV serotype competition and co-infection on viral kinetics in the mosquito Aedes aegypti

description: files
DOI: 10.6084/m9.figshare.27478068.v1
title: Potential of Dip Treatments to Disinfest Cuttings of the Invasive <i>Thrips parvispinus</i> (Thysanoptera: Thripidae)

description: This study aimed to assess the efficacy of dip treatments using four biorational and microbial insecticides (mineral oil and <i>Beauveria bassiana </i>based) in controlling <i>T. parvispinus</i> on bean seedlings.
DOI: 10.6084/m9.figshare.21979643.v1
title: Supplemental file 3b_EC_Biomarkers_LgVSmall

description: Highly expressed genes in rat mesenteric artery EC between large and small arteries
DOI: 10.6084/m9.figshare.9249020.v2
title: Quantification Figure 6 (GraphPad Prism file)

description: Impairment of [3H] D-aspartate uptake by TNF-α in human iPSC-derived astrocytes.Aspartate uptake was carried out (a) – 1 day or (b) – 5 days after exposing cells to vehicle or 10 ng/mL TNF-α. The competitive inhibitor of glutamate transporters DL-TBOA was added 10 minutes prior to aspartate. Data are presented as means ± SEM of the percentage of counts per minute (cpm). (c) – Cell viability was evaluated by ethidium incorporation. As a positive control for cell death, cells were lysed with Triton 2 %. As a positive control for cell viability, cells grown in DMEM/F12 with 10 % SFB were also evaluated. Data are presented as means ± SEM of the percentage of ethidium incorporation (arbitrary units of fluorescence). Data from 3 cell lines and experiments were performed in duplicates (a), (b) and quadruplicates (c). *P &lt; 0.05; **P &lt; 0.01; ***P &lt; 0.001; One-way ANOVA followed by Tukey post hoc test. ns – Non-significant.
DOI: 10.6084/m9.figshare.20489715.v7
title: Supporting data for "Multivariate divergence in wild microbes: no evidence for evolution along a genetic line of least resistance"

description: All raw images, measurement data, phylogenetic trees and scripts associated with the manuscript "Multivariate divergence in wild microbes: no evidence for evolution along a genetic line of least resistance"
DOI: 10.6084/m9.figshare.13265219.v1
title: Data from - Early predation risk shapes adult learning and cognitive flexibility

description: We reared Trinidadian guppy (<i>Poecilia reticulata</i>) fry in either a no-risk or a simulated predation risk environment. We then kept all fish in similar, no-risk environments and subsequently tested their adult performance in two cognitive assays – associative learning and reversal learning.<br>This depository contains the raw data for the associative learning and reversal learning tasks, and a processed data table containing information on the performance of the fish in both tasks (learning criterion). This dataset is linked to a preprint (https://ecoevorxiv.org/7xyjb/) and manuscript published in Oikos (doi: 10.1111/oik.08481).
DOI: 10.6084/m9.figshare.12674357.v1
title: CNV calling in MUG goats

description: Copy number variation (CNV) mapping in a population of 1036 Murciano-Granadina goats
DOI: 10.6084/m9.figshare.24234859.v1
title: 118 literature review paper data

description: 118 TCM literature review paper
DOI: 10.6084/m9.figshare.28505813.v1
title: Molecular circumscription and historical biogeography of Sladeniaceae <i>sensu lato</i> (Ericales)

description: The dataset includes alignments of Angiosperms353 sequences for <i>Sladenia celastrifolia</i>, <i>Ficalhoa laurifolia</i>, <i>Franklandia fucifolia</i>, and 28 accessions from 25 genera of Ericales, retrieved from the Kew Tree of Life Explorer (https://treeoflife.kew.org/).
DOI: 10.6084/m9.figshare.28509470.v1
title: Code for "Taxonomy bias in metagenome-assembled genome recovery"

description: Code relating to the manuscript entitled "Taxonomy bias in metagenome-assembled genome recovery".
DOI: 10.6084/m9.figshare.14691249.v1
title: Dataset.zip

description: Transportation information, historical places and shopping centers in Tehran, Iran<br>
DOI: 10.6084/m9.figshare.1368272.v1
title: EIT of Electrolysis

description: This dataset has been used to show the feasibility of monitoring electrolytic ablation procedures using EIT
DOI: 10.6084/m9.figshare.1603175.v2
title: The LONI Pipeline workflow inputs

description: Corpora used to calculate commonly occurring workflow fragments from the LONI Pipeline
DOI: 10.15468/dl.6kqzgr
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Sparganium angustifolium Michx."
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001436-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11610156.v1
title: Direct Analysis of Human Hair Before and After Cosmetic Modification Using a Recent Data Fusion Method

description: The cosmetic modification of hair is a very common procedure used to mask or cover evidence at a crime scene. Deoxyribonucleic acid (DNA) tests are expensive and require good-quality collection of samples and a database profile. To overcome these challenges, direct analysis was performed on a large set of hair strands collected from individuals, denoted original samples, and the data were compared with those of the same samples after cosmetic modification performed by bleaching the samples in the laboratory. A total of 127 samples were evaluated in this study using two analytical techniques, wavelength-dispersive X-ray fluorescence (WDXRF) and laser-induced breakdown spectroscopy (LIBS). Instead of testing many algorithms to develop classification models for the original and bleached samples, a recent method was applied that combines information from 17 classifiers. Data fusion was also evaluated to improve the accuracy of the classification model, which was higher than 99.2%, with no requirements to select eigenvectors or thresholds.
DOI: 10.6084/m9.figshare.28027850.v1
title: locationallabormarket_table

description: Data and Dofile for the Locational Labor Market Table.
DOI: 10.6084/m9.figshare.28447337.v1
title: README_Fadiga de compaixão, presenteísmo e transtornos mentais comuns em profissionais de saude.pdf

description: Trata-se do banco de dados de um estudo de avaliou a presença de fadiga de compaixão e as associações desta com variáveis sociodemográficas, de trabalho e de saúde.
DOI: 10.6084/m9.figshare.13198709.v1
title: DNA Sequencing Data 2020 PLOS One 2

description: This data set is composed of sequencing data used in a PLOS One manuscript submitted in 2020
DOI: 10.6084/m9.figshare.14984793.v1
title: Source data for Main Figures and Supplementary Figures

description: Source data for main figure and extended data
DOI: 10.6084/m9.figshare.10010537.v1
title: Appendix table 1a & 1b.xlsx

description: Appendix Table 1a and 1b<br>
DOI: 10.6084/m9.figshare.27083056.v1
title: LUT_HST_FIRI_DMDrotor

description: Just the 2nd file creation in the project
DOI: 10.6084/m9.figshare.27203769.v1
title: Test data for vertical regridding

description: This is a small test dataset which contains data at fixed depth levels. The goal is to regrid the data vertically to terrain-following coordinates.
DOI: 10.6084/m9.figshare.28505585.v2
title: Dataset - Natural Language Processing for BPMN Model Generation: A Systematic Literature Review

description: A dataset that contains the relevant tables and the references to all relevant works of an SLR on Natural Language Processing for BPMN Model Generation.
DOI: 10.6084/m9.figshare.23108354.v1
title: Data from Shi & Zhang et al, 'Vector-mediated viral exchange between crops and weedy plants'

description: Data underlying figures 1-7 in the paper 'Vector-mediated viral exchange between crops and weedy plants', with lead authors Xiao-bin Shi and Zhuo Zhang, submitted for publication in the Journal of Pest Science.<strong> </strong>
DOI: 10.6084/m9.figshare.18185477.v1
title: HMC_variant_list.xlsx

description: List of variants identified by Hamad Medical Corporation to be of interest for inclusion in QChip
DOI: 10.6084/m9.figshare.17153378.v1
title: Supplemental table 3 | Beta coefficient matrix

description: Supplemental data: beta coefficients and corresponding p-values presented in article Figure 3.
DOI: 10.6084/m9.figshare.1557860.v2
title: Abundance and Distribution of plants on York University

description: The purpose of this experiment was to sample plant population and communities by using quadrats and transects. The experiment was conducted at Grassland and Woodlot on York University’s campus and was performed by a group of four people. Four dataset were collected, two from grassland and two from woodlot. The time was 15:00 on Monday September 21,2015 and the weather was sunny at 21 Degree Celsius, slightly windy. This dataset covers the plants abundance and identification collected from 25 sampled quadrats placing on ground in the grassland.
DOI: 10.6084/m9.figshare.19085645.v1
title: Dataset for Mathematical Model of in vitro Hepatocellular Cholesterol and Lipoprotein Metabolism, fig. 8

description: Combined therapy with statins and anti-PCSK9 agents might demonstrate additive effects on LDL and VLDL levels.
DOI: 10.6084/m9.figshare.8292698.v1
title: Flour and byproducts of mombuca blood orange: chemical characterization and application in ice cream

description: Abstract In this study, the chemical components of flavedo, albedo, seed, bagasse and flours obtained from the orange Citrus sinensis L. Blood Osbeck of Mombuca were characterized, and the flours were used to replace fat in ice cream. Four chocolate ice cream formulations were developed, with different flour concentrations, besides the elaboration of a control formulation. Analysis of centesimal composition and sensory acceptability were carried out, and results were evaluated by ANOVA and Tukey mean test (p ≤ 0.05). The moisture content of all flours obtained is within the limits established by the National Health Surveillance Agency, which determines a maximum of 15% moisture on flour and the amount of fibers is higher than that found in other studies with different fruits, what characterizes it as high fiber content (greater than 6%). The results of sensory evaluation indicated that there is greater acceptance of the use of albedo flour in the formulation of ice cream than seed and Orange flavedo flour. The use of albedo flour as a fat substitute promoted significant reduction of lipids (33.3%) and a fiber increase (59.2%) in the ice cream. The fractions and flours obtained from blood orange have a great potential for use in food products formulations, given its favorable chemical composition, as well as for fiber extraction.
DOI: 10.4121/uuid:607a19d6-32c0-4b33-a8c1-95293637c2ac
title: Heavy particles in turbulent flows RM-2007-GRAD-EULER-2048

description: Parent item: Heavy particles in turbulent flows RM-2007-GRAD-2048 Heavy point-wise Lagrangian particle evolution in homogeneous and isotropic turbulent velocity field from a 2048 cubed DNS. Trajectory length: 4720 LAGR_DT Total number of particles per subset: 3184 * 64 [ Subset : Stokes number ] [ St0..2 : 0.0 ][ St3..5 : 0.16 ][ St6..8 : 0.6 ][ St9..11 : 1.0 ][ St12 : 2.0 ][ St13 : 3.0 ][ St14 : 5.0 ] [ St15 : 10.0 ][ St16 : 20.0 ][ St17 : 30.0 ][ St18 : 40.0 ][ St19 : 50.0 ][ St20 : 70.0 ]
DOI: 10.6084/m9.figshare.11418300.v1
title: Hansen_et_al - Figure 3, Nanobody-directed targeting of optogenetic tools to study signaling in the primary cilium

description: Data set presented in Figure 3 of the publication "Nanobody-directed targeting of optogenetic tools to study signaling in the primary cilium", https://doi.org/10.7554/eLife.57907
DOI: 10.6084/m9.figshare.1140439.v3
title: A simple extension to the CMASA method for the prediction of catalytic residues in the presence of single point mutations

description: The automatic identification of catalytic residues still remains an important challenge in<br>structural bioinformatics. Sequence-based methods are good alternatives when the<br>query shares a high percentage of identity with a well-annotated enzyme. However,<br>when the homology is not apparent, which occurs with many structures from the<br>structural genome initiative, structural information should be exploited. A local<br>structural comparison is preferred to a global structural comparison when predicting<br>functional residues. CMASA is a recently proposed method for predicting catalytic<br>residues based on a local structure comparison. The method achieves high accuracy<br>and a high value for the Matthews correlation coefficient. However, point substitutions<br>or a lack of relevant data strongly affect the performance of the method. In the present<br>study, we propose a simple extension to the CMASA method to overcome this<br>difficulty. Extensive computational experiments are shown as proof of concept<br>instances, as well as for a few real cases. The results show that the extension<br>performs well when the catalytic site contains mutated residues or when some<br>residues are missing. The proposed modification could correctly predict the catalytic<br>residues of a mutant transferase of the kinase family, 1EVF. It also successfully<br>predicted the catalytic residues for 3HRC despite the lack of information for a relevant<br>side chain atom in the PDB file.
DOI: 10.6084/m9.figshare.27186516.v3
title: WEBA_dataset

description: The WEBA dataset is generated to reflect the effect of work content on perceived workload, acute stress, emotion, and performance of workers in real-life working conditions. By in-depth analysis of the work characteristics from a multi-disciplinary approach, and utilizing a specific condition of a coffeeshop with event-driven sensors and wearable technology, a controlled environment is created in the closest way to a laboratory experiment. The work-content factors are emphasized in the position of baristas, and become the main stressors that impose their effect on the participants, with each factor having a different impact on the workload perception, thus creating different stress and mental status during a work shift. The WEBA dataset contributes to further developing an understanding of the work content effect on labor performance and well-being.
DOI: 10.6084/m9.figshare.28425350.v1
title: Koriyama MtWave

description: Outputs of the numerical simulation for "Clear-air Turbulence Upstream of a Hydraulic Jump Leading to a Helicopter Accident - A Large Eddy Simulation".
DOI: 10.15468/dl.wpxwhu
title: Occurrence Download

description: A dataset containing 4502 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litoria chloris (Boulenger, 1892)"
 ]
}

 The dataset includes 4502 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001446-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.8959499.v3
title: Motives behind Facebook usage: a study of 11587 users worldwide

description: <b>Marta Kowal<sup>1*</sup>, Piotr Sorokowski<sup>1</sup>, Agnieszka Sorokowska<sup>1</sup>, Małgorzata Dobrowolska<sup>2</sup>, Katarzyna Pisanski<sup>1</sup>, Anna Oleszkiewicz<sup>1, 51</sup>, Toivo Aavik<sup>3</sup>, Grace Akello<sup>5</sup>, Charlotte Alm<sup>6</sup>, Naumana Amjad<sup>7</sup>, Afifa Anjum<sup>7</sup>, Kelly Asao<sup>8</sup>, Chiemezie S. Atama<sup>9</sup>, Derya Atamtürk Duyar<sup>10</sup>, Richard Ayebare<sup>11</sup>, Mons Bendixen<sup>12</sup>, Aicha Bensafia<sup>15</sup>, Boris Bizumic<sup>14</sup>, Mahmoud Boussena<sup>15</sup>, David M. Buss<sup>8</sup>, Marina Butovskaya<sup>16</sup>, Seda Can<sup>17</sup>, Katarzyna Cantarero<sup>18</sup>, Antonin Carrier<sup>19</sup>, Hakan Cetinkaya<sup>17</sup>, Daniel Conroy-Beam<sup>20</sup>, Marco A. Correa Varella<sup>21</sup>, Rosa M. Cueto<sup>22</sup>, Marcin Czub<sup>1</sup>, Daria Dronova<sup>16</sup>, Seda Dural<sup>17</sup>, Izzet Duyar<sup>10</sup>, Berna Ertugrul<sup>10</sup>, Agustín Espinosa<sup>22</sup>, Ignacio Estevan<sup>23</sup>, Carla S. Esteves<sup>24</sup>, Tomasz Frąckowiak<sup>1</sup>, Jorge Contreras-Graduño<sup>25</sup>, Farida Guemaz<sup>13</sup>, Ivana Hromatko<sup>28</sup>, Chin-Ming Hui<sup>29</sup>, Herak Iskra<sup>19</sup>, Jas L. Jaafar<sup>30</sup>, Feng Jiang<sup>31</sup>, Konstantinos Kafetsios<sup>32</sup>, Tina Kavcic<sup>33</sup>, Leif Edward Ottesen Kennair<sup>12</sup>, Nicolas Kervyn<sup>19</sup>, Nils C. Köbis<sup>34</sup>, András Láng<sup>36</sup>, Georgina R. Lennard<sup>14</sup>, Ernesto León<sup>22</sup>, Torun Lindholm<sup>6</sup>, Giulia Lopez<sup>37</sup>, Mohammad Madallh Alhabahba<sup>38</sup>, Alvaro Mailhos<sup>23</sup>, Zoi Manesi<sup>34</sup>, Rocio Martinez<sup>39</sup>, Sarah L. McKerchar<sup>14</sup>, Norbert Meskó<sup>36</sup>, Girishwar Misra<sup>40</sup>, Hoang Moc Lan<sup>41</sup>, Conal Monaghan<sup>14</sup>, Emanuel C. Mora<sup>42</sup>, Alba Moya-Garofano<sup>39</sup>, Bojan Musil<sup>27</sup>, Jean C. Natividade<sup>43</sup>, George Nizharadze<sup>44</sup>, Elisabeth Oberzaucher<sup>45</sup>, Mohd S. Omar Fauzee<sup>46</sup>, Ernest Onyishi<sup>9</sup>, Baris Özener<sup>10</sup>, Ariela F. Pagani<sup>37</sup>, Vilmante Pakalniskiene<sup>47</sup>, Miriam Parise<sup>37</sup>, Farid Pazhoohi<sup>48</sup>, Mariia Perun<sup>49</sup>, Annette Pisanski<sup>42, 50</sup>, Nejc Plohl<sup>27</sup>, Camelia Popa<sup>21</sup>, Pavol Prokop<sup>52, 53</sup>, Muhammad Rizwan<sup>54</sup>, Mario Sainz<sup>4</sup>, Svjetlana Salkičević<sup>28</sup>, Ruta Sargautyte<sup>47</sup>, Susanne Schmehl<sup>45</sup>, Oksana Senyk<sup>49</sup>, Rizwana Shaikh<sup>55</sup>, Shivantika Sharad<sup>56</sup>, Franco Simonetti<sup>57</sup>, Meri Tadinac<sup>28</sup>, Truong Thi Khanh Ha<sup>41</sup>, Trinh Thi Linh<sup>41</sup>, Karina Ugalde González<sup>58</sup>, Nguyen Van Luot<sup>41</sup>, Christin-</b> <b>Melanie Vauclair<sup>24</sup>, Luis D. Vega Araya<sup>58</sup>, Gyesook Yoo<sup>60</sup>, Stanislava Yordanova Stoyanova<sup>26</sup>, Zainab F. Zadeh<sup>59</sup>, Maja Zupančič<sup>35</sup>.</b>
DOI: 10.6084/m9.figshare.25127564.v1
title: Train and test sets

description: This data set contains the CV and job description dataset used during the training of a Siamese network. Each dataset includes its table schema.
DOI: 10.6084/m9.figshare.21431814.v1
title: Tedsim_lineage

description: This dataset is based on TedSim simulated data :cite:<code>pan:22</code>. TedSim simulates cell division events from root cell to present-day cells, simultaneously generating two data modalities for each cell, gene expression and a lineage barcode. The :attr:<code>anndata.AnnData.X</code> entry is based on pre-processing of the counts data consisting of :meth:<code>scanpy.pp.normalize_total</code> and :meth:<code>scanpy.pp.log1p</code>. The simulation provides us with the <code>.obsm["barcodes"]' and the following metadata fields</code>parent<code>,</code>cluster<code>,</code>depth<code>, and</code>cellID<code>stored in</code> :attr:<code>anndata.AnnData.obs</code>. The <code>.obs["time"]</code> is assigned only to cells at depth 8 and 12, presenting an early and late time-point respectively. Similarly `.obsp["barcodes_cost"]' contains a the pre-computed barcodes distance cost matrix only for the 8 and 12 depth cells.
DOI: 10.6084/m9.figshare.6169016.v1
title: NCommunications-4-21-2018.xlsx

description: Original data used in Nature Communications (2018).
DOI: 10.6084/m9.figshare.1174638.v1
title: survey for ecology lab

description: Three researcher were gathered in front of the student center on Wednesday, 17 of September. In this 15 minutes survey, the student who were out of the student centre were observed and investigated by these researchers.Students were observed whether they were female or male, whether they were using their cell phone (talking or playing on the phone) or not and moreover the number of their siblings were asked.
DOI: 10.6084/m9.figshare.27952317.v1
title: IEMOCAP Dataset.zip

description: We are conducting research on speech emotion recognition. The established Neural Controlled Differential Equations (NCDEs) model was tested using the IEMOCAP dataset.The IEMOCAP dataset, produced by the University of Southern California, is an interactive emotional motion capture (USC-IEMOCAP) database. The IEMOCAP dataset is divided into scripted dialogues and improvised dialogues. We used all the speech files for training.