cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14330011
title: SynapseNet Training Data

description: This dataset contains room-temperature single-axis TEM tomograms from Schaffer collateral and mossy fiber synapses in organotypic hippocampal slices. The tomograms were published in the two studies [1, 2]. The data was re-used for training deep neural networks to segment different synaptic structures in electron micrographs in [3]. For the tomograms, organotypic slices were prepared from the hippocampi of neonatal mice according to the interface protocol55 and vitrified after 28 days in vitro in culture medium supplemented with 20% (w/v) bovine serum albumin using an HPM100 (Leica) high-pressure freezing device. The dataset also contains 23 tomograms resulting from chemically-fixed material, which were also published in (Maus et al., 2020). For these tomograms, wild-type animals at postnatal day 28 were transcardially perfused under deep anesthesia, first with 0.9% sodium chloride solution, and then one of two fixatives (Fixative 1: Ice-cold 4% paraformaldehyde, 2.5% glutaraldehyde in 0.1 M phosphate buffer16; Fixative 2: 37° C 2% paraformaldehyde, 2.5% glutaraldehyde, 2 mM CaCl2, in 0.1 M cacodylate buffer56). Brains were rinsed and sectioned coronally through the dorsal hippocampus in an ice-cold 0.1 M phosphate buffer using a VT 1200S vibratome (Leica) (step size 100 µm; amplitude 1.5 mm, speed 0.1 mm/sec). Hippocampal CA3 subregions were excised using a 1.5 mm diameter biopsy punch and high-pressure frozen on the same day in 20% (w/v) bovine serum albumin using an HPM100 (Leica) high-pressure freezing device. For both sample preparations, automated freeze-substitution was performed. Tomograms were collected using a 200 kV JEM-2100 (JEOL) transmission electron microscope equipped with an 11 MP Orius SC1000 CCD camera (Gatan). Tilt-series (tilt range +/- 60°; 1° angular increments) were acquired at 30 000x magnification using SerialEM58. Tomographic reconstructions were generated using weighted back-projection with etomo.The data is organized into two different subfolders for data with annotations for "vesicles" and "active_zones". Each of these subfolders is further subdivided into "train" and "test" folders, which containtomograms for the two different sample preparations in "chemical_fixation" and "single_axis_tem".Each tomogram and the corresponding annotation is stored as a hdf5 file, containing the following internal datasets:- raw: The tomogram data.- labels/vesicles: Annotations for the synaptic vesicles, annotated with IMOD, further postprocessed and then exported to instance masks. (for tomograms in "vesicles")- labels/AZ: Annotations for the active zone, annotated with IMOD and exported to binary masks.

[1] Imig et al., The Morphological and Molecular Nature of Synaptic Vesicle Priming at Presynaptic Active Zones, Neuron, 2014, DOI:10.1016/j.neuron.2014.10.009[2] Maus et al., Ultrastructural Correlates of Presynaptic Functional Heterogeneity in Hippocampal Synapses, Cell Reports, 2020, DOI: 10.1016/j.celrep.2020.02.083[3] Muth, Moschref et al., 2024, Preprint to be published
DOI: 10.15468/dl.6ncjcx
title: Occurrence Download

description: A dataset containing 70057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-109.85773 11.93558,-25.42782 11.93558,-25.42782 45.72547,-109.85773 45.72547,-109.85773 11.93558))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Liquidambar styraciflua L."
 ]
}

 The dataset includes 70057 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026263-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5e7gpn
title: Occurrence Download

description: A dataset containing 956346 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Watervogels - Wintering waterbirds in Flanders, Belgium"
 ]
}

 The dataset includes 956346 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026253-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hd4trs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomberesox scombroides (Richardson, 1843)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026265-241126133413365/datasets/export for details.
DOI: 10.57745/vgwwwn
title: NG-34457_T4y_agt_lib726382_10324_1_2.fastq.gz

description: T4mut_alpha-gt sequencing reads.
DOI: 10.57745/zyk1p7
title: Escherichia_phage_T4mut_alphagt.gbk

description: Escherichia_phage_T4mut_alpha-gt complete genome sequence.
DOI: 10.57745/dl0fcg
title: NG-34457_T4y_agt_lib726382_10324_1_1.fastq.gz

description: T4mut_alpha-gt sequencing reads.
DOI: 10.57745/m0n24l
title: Escherichia_phage_T4mut_betagt.gbk

description: Escherichia_phage_T4mut_beta-gt complete genome sequence.
DOI: 10.57745/szcu6s
title: NG-34457_T4y_bgt_lib727434_10324_4_1.fastq.gz

description: T4mut_beta-gt sequencing reads.
DOI: 10.57745/upmmtg
title: NG-34457_T4y_bgt_lib727434_10324_4_2.fastq.gz

description: :unav
DOI: 10.5281/zenodo.14333106
title: knowledge about seasonal influenza and practice of ‎influenza vaccination ‎
DOI: 10.5281/zenodo.14333107
title: knowledge about seasonal influenza and practice of ‎influenza vaccination ‎
DOI: 10.15468/dl.u8epte
title: Occurrence Download

description: A dataset containing 9945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "OccurrenceStatus is Present",
 "TaxonKey is Ursus americanus Pallas, 1780",
 "Year 2014-2024"
 ]
}

 The dataset includes 9945 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026266-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3ucjw
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrocophias hyoprora (Amaral, 1935)"
 ]
}

 The dataset includes 138 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026267-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25403/upresearchdata.27980558
title: Historical load shedding data for the City of Tshwane, 2015 to 2023

description: The historical, hourly, load shedding outage stages from 2015 to 2023 in the City of Tshwane, Gauteng in South Africa. This data is specifically for the following arears in Pretoria: 1) Hatfield, 2) Hillcrest, 3) Mamelodi, 4) Menlyn, 5) Onderstepoort, 6) Silver Lakes, and 7) Soshanguve. These regions represent a good balance between the affluent and historically disadvantaged communities in the municipality.
DOI: 10.15468/dl.ywf54r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Catoptrus iejima Fujita & Naruse, 2011",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026268-241126133413365/datasets/export for details.
DOI: 10.15468/dl.fsbyjn
title: Occurrence Download

description: A dataset containing 24730 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((129.51979 -2.63496,128.18663 -2.76609,127.4727 -3.13763,127.42899 -3.57473,127.64754 -3.77871,128.42704 -3.87342,128.77672 -3.76414,129.51979 -3.5893,130.02974 -3.56016,130.65625 -3.84428,130.88938 -3.94627,131.03508 -3.52374,130.85295 -3.10849,130.35757 -2.87537,129.51979 -2.63496))"
 ]
}

 The dataset includes 24730 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026269-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xks6fr
title: Occurrence Download

description: A dataset containing 356931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-22.32894 27.71045,50.66386 27.71045,50.66386 56.92307,-22.32894 56.92307,-22.32894 27.71045))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Olea europaea L."
 ]
}

 The dataset includes 356931 records from 389 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026258-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34777/qx4z-mb36
title: RealDigiFace

description: DigiFace1M(https://github.com/microsoft/DigiFace1M) originally created by the 3D rendering engines. When this dataset is used to train Face Recognition systems there is OOD problem by evaluating the trained models against real dataset like LFW, IJB-B and IJB-C. In our paper we tried to address this problem by post processing the original images.
DOI: 10.15468/dl.tfwung
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomberesox saira Brevoort, 1856",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026270-241126133413365/datasets/export for details.
DOI: 10.23668/psycharchives.15749
title: Datasets for: Between applause and arm crossing: Public reception of within-group apologies and the role of system justification

description: Within-group apologies restore important values and afford victims their dignity; however, the system justification motive may cause group authorities to hesitate in apologizing or to include system-justifying expressions to soothe the general public. Two studies are conducted, both on-campus (Study 1) and off-campus (Study 2), to empirically illustrate the public reception of within-group apologies (victim-focused and system-challenging apology) and silence. The results indicate that higher levels of system justification correlate with more favorable attitudes toward responses from authority. For the general public (Study 2), high-level justifiers supported the government's silence while maintaining trust despite perceiving unfairness. The average majority favored the government's apology over silence, with low-level justifiers remaining negative regardless. Additionally, the general public in Study 2 favored the victim-focused apology over the system-challenging one, rendering system-justifying expressions unnecessary. We propose that authorities focus on the average majority, considering the potential ineffectiveness of apologies for those with low levels of system justification.
DOI: 10.15468/dl.4thhu2
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is ABV - Common breeding birds in Flanders, Belgium",
 "TaxonKey is Athene noctua (Scopoli, 1769)"
 ]
}

 The dataset includes 108 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026271-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qb3bw
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coryphaena hippurus Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 333 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026272-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14229377
title: Data and code used in: Non-detection during excursions by citizen scientists...

description: DATA

repo_identities.csv

Identities of observations from the NDFF (https://www.ndff.nl/) that were used in the analyses: All observations without protocol (Losse waarnemingen) in the province of Zeeland between 2017-01-01 and 2023-12-31, having a known observer. A total of 150 species were selected from the 10 most observed groups, by taking the most common species within each group: 30 birds, 20 plants, 20 moths, 20 butterflies, 10 mammals, 10 dragonflies, 10 Diptera, 10 Hymenoptera, 10 Orthoptera and 10 mushrooms. This file lists all 1,477,585 identities of the observations of these species that were selected. The following fields were used in the analyses: identity, osn_id, Dutch and scientific name, x and y coordinates, start date and observer.

knmi_weather_vlissingen.txt

Weather data that were used in the analyses, downloaded from https://daggegevens.knmi.nl/klimatologie/daggegevens

20230114_species.csv

Species metadata including species group and species rarity, downloaded from waarneming.nl

CODE

_selected_model.py

Python code to rerun the analyses and reproduce the results

_summarizing_figs.py

Python code to generate the summarizing figures

OUTPUT

_selected_model.html

Export of jupyter notebook that ran the python code, containing both input code and output text/ figures

species_results_selected_model.csv

Output file after running _selected_model.py, suitable as input for _summarizing_figs.py
DOI: 10.5281/zenodo.14229378
title: Data and code used in: Non-detection during excursions by citizen scientists...

description: DATA

repo_identities.csv

Identities of observations from the NDFF (https://www.ndff.nl/) that were used in the analyses: All observations without protocol (Losse waarnemingen) in the province of Zeeland between 2017-01-01 and 2023-12-31, having a known observer. A total of 150 species were selected from the 10 most observed groups, by taking the most common species within each group: 30 birds, 20 plants, 20 moths, 20 butterflies, 10 mammals, 10 dragonflies, 10 Diptera, 10 Hymenoptera, 10 Orthoptera and 10 mushrooms. This file lists all 1,477,585 identities of the observations of these species that were selected. The following fields were used in the analyses: identity, osn_id, Dutch and scientific name, x and y coordinates, start date and observer.

knmi_weather_vlissingen.txt

Weather data that were used in the analyses, downloaded from https://daggegevens.knmi.nl/klimatologie/daggegevens

20230114_species.csv

Species metadata including species group and species rarity, downloaded from waarneming.nl

CODE

_selected_model.py

Python code to rerun the analyses and reproduce the results

_summarizing_figs.py

Python code to generate the summarizing figures

OUTPUT

_selected_model.html

Export of jupyter notebook that ran the python code, containing both input code and output text/ figures

species_results_selected_model.csv

Output file after running _selected_model.py, suitable as input for _summarizing_figs.py
DOI: 10.15468/dl.66u4gm
title: Occurrence Download

description: A dataset containing 17551748 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 17551748 records from 3465 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236143-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfg66b
title: Occurrence Download

description: A dataset containing 182534 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus nigra J.F.Arnold"
 ]
}

 The dataset includes 182534 records from 919 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077238-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cg4vo5
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vigna yadavii (Leguminosae: Papilionoideae), a new species from Western Ghats, India"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019130-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tzpbve
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cortinarius ohlone Bojantchev, Cortinarius caesiobrunneus Kytöv., Niskanen & Liimat.)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 283 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043759-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujjkm7
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "Geometry POLYGON((-65.83008 -60.19616,-16.34766 -60.67318,-15.11719 -42.81152,-13.71094 -12.89749,-31.28906 10.83331,-43.24219 24.84657,-38.32031 36.87962,-25.83984 65.58572,-36.38672 67.54217,-47.63672 67.54217,-68.68652 67.25506,-69.16992 65.54937,-77.21191 64.68032,-78.00293 63.33241,-77.3877 62.20651,-72.68555 59.04055,-70.13672 53.85253,-76.24512 48.95137,-78.83789 41.83683,-82.44141 37.30028,-95.80078 33.57801,-101.77734 27.21556,-98.10791 18.16673,-94.81201 17.28771,-90.06592 14.96601,-87.60498 15.00846,-85.18799 13.94473,-84.35303 10.2933,-82.33154 8.68964,-81.10107 8.47237,-80.52979 8.6462,-79.29932 9.25394,-78.46436 8.9936,-77.03613 7.4932,-69.60937 2.1089,-50.97656 -14.26438,-68.99414 -40.5138,-72.1582 -51.01375,-68.4668 -54.41893,-65.83008 -60.19616))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptosynapta crassipatina Clark, 1924"
 ]
}

 The dataset includes 40 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197506-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjywcy
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tanystylum rehderi Child, 1970)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043760-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpqkjj
title: Occurrence Download

description: A dataset containing 36015 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "CoordinateUncertaintyInMeters 0.0-99.0",
 "TaxonKey is Quercus pubescens Willd.",
 "Year 1980-2024"
 ]
}

 The dataset includes 36015 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015281-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o75ut4
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dioscorea membranacea Pierre ex Prain & Burkill",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050453-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrmb6v
title: Occurrence Download

description: A dataset containing 2925 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SMNS Palaeontological collection - Fossil mammals"
 ]
}

 The dataset includes 2925 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094256-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duqxa5
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetrapilus parvilimbus (Merr. & Chun) de Juana"
 ]
}

 The dataset includes 40 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077206-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dl8yt6
title: Occurrence Download

description: A dataset containing 3104212 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-81.68994 1.32923,-81.51416 1.32923,-81.51416 1.35119,-81.68994 1.35119,-81.68994 1.32923))",
 "Geometry POLYGON((-81.82617 -4.86767,-75.01465 -4.86767,-75.01465 2.15721,-81.82617 2.15721,-81.82617 -4.86767))"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3104212 records from 628 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050454-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/xtw-c2e-73a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22710619.v1
title: ExtData_Figure_9_images_for_paper

description: <em>(A-B) Xrn1 knock out A549 cells were infected with WT PR8 or PR8-PA(∆X) (A), or WT H1N1pdm09 or H1N1pdm09-PA(∆X) (B), or mock infected. RNA was extracted to run 5’ RACE using primers ~150-200 nt downstream of GCUG sites that are predicted to be in a hairpin loop in the indicated viral mRNAs. Gel images used in paper are representative of 3 experiments. </em> <em>R# --&gt; replicate number; LG### --&gt; experiment number</em> <em>.sgd files are the original source files acquired with the Syngene imager</em>