cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7308869
title: EnergyGrid_legAmazon_WGS84.prj

description: The electrical grid in the Legal Amazon of Brazil was hand-digitized in ArcGIS by tracing the path of transmission lines detected using 2017 ESRI World Imagery (pixel size varying from 10-30 m resolution, depending on the location). We visually inspected images covering the entire Legal Amazon, starting from publicly available datasets of transmission lines and power generation plants. Once a line was located, it was traced to its origin at a substation or power source. From there, we located and traced other lines that originated at the same source. Since all lines originate at a substation or generation plant, this was an effective way to ensure the entire region was searched. All visible transmission and distribution lines were recorded, regardless of size or voltage, including instances where the lines themselves were visible or only the posts or towers that support the transmission lines were detected. Distribution lines within cities were not typically included, as they were extremely difficult to detect. This dataset is in WGS84.<br>Contact me at jacyhyde@gmail.com with inquiries!
DOI: 10.7284/128297
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1718 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128309
title: Expendable Probe data collected during research cruise RR1718 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128298
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1718 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7308785
title: RRM domain multiple sequence alignments

description: Multiple sequence alignments of 415 RRM families.<br>
DOI: 10.6084/m9.figshare.7308797
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Topologies and MD parameter files

description: Topologies and MD parameter files for MD simulations described in the paper "Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE"
DOI: 10.6084/m9.figshare.7308797.v1
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Topologies and MD parameter files

description: Topologies and MD parameter files for MD simulations described in the paper "Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE"
DOI: 10.6084/m9.figshare.7308779
title: Supplementary Material for: A Pilot Study to Assess the Feasibility of Collecting and Transmitting Clinical Trial Data with Mobile Technologies

description: <b><i>Background:</i></b> The use of mobile technologies for data capture and transmission has the potential to streamline clinical trials, but researchers lack methods for collecting, processing, and interpreting data from these tools. <b><i>Objectives:</i></b> To assess the performance of a technical platform for collecting and transmitting data from six mobile technologies in the clinic and at home, to apply methods for comparing them to clinical standard devices, and to measure their usability, including how willing subjects were to use them on a regular basis. <b><i>Methods:</i></b> In part 1 of the study, conducted over 3 weeks in the clinic, we tested two device pairs (mobile vs. clinical standard blood pressure monitor and mobile vs. clinical standard spirometer) on 25 healthy volunteers. In part 2 of the study, conducted over 3 days both in the clinic and at home, we tested the same two device pairs as in part 1, plus four additional pairs (mobile vs. clinical standard pulse oximeter, glucose meter, weight scale, and activity monitor), on 22 healthy volunteers. <b><i>Results:</i></b> Data collection reliability was 98.1% in part 1 of the study and 95.8% in part 2 (the percentages exclude the wearable activity monitor, which collects data continuously). In part 1, 20 of 1,049 overall expected measurements were missing (1.9%), and in part 2, 45 of 1,083 were missing (4.2%). The most common reason for missing data was a single malfunctioning spirometer (13 of 20 total missed readings) in part 1, and that the subject did not take the measurement (22 of 45 total missed readings) in part 2. Also in part 2, a higher proportion of at-home measurements than in-clinic readings were missing (12.6 vs. 2.7%). The data from this experimental study were unable to establish repeatability or agreement for every mobile technology; only the pulse oximeter demonstrated repeatability, and only the weight scale demonstrated agreement with the clinical standard device. Most mobile technologies received high “willingness to use” ratings from the patients on the questionnaires. <b><i>Conclusions:</i></b> This study demonstrated that the wireless data transmission and processing platform was dependable. It also identified three critical areas of study for advancing the use of mobile technologies in clinical research: (1) if a mobile technology captures more than one type of endpoint (such as blood pressure and pulse), repeatability and agreement may need to be established for each endpoint to be included in a clinical trial; (2) researchers need to develop criteria for excluding invalid device readings (to be identified by algorithms in real time) for the population studied using ranges based on accumulated subject data and established norms; and (3) careful examination of a mobile technology’s performance (reliability, repeatability, and agreement with accepted reference devices) during pilot testing is essential, even for medical devices approved by regulators.
DOI: 10.6084/m9.figshare.7308785.v1
title: RRM domain multiple sequence alignments

description: Multiple sequence alignments of 415 RRM families.<br>
DOI: 10.7284/128300
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1718 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7308695
title: Dataset - Inferential false memory for emotional events in older adults

description: Dataset and R code for the analysis on "Inferential False Memory for Emotional Events in Older Adults"<br>The analysis in R employs MCMC estimation methods that may take long (from a few minutes for fitting a single model to serveral hours--or days--for cycles computing sensitivity analyses).<br>The dataset reports observations on 76 healthy older adults.<br>The dataset is presented in the long form, i.e., there is one row per single response (each participant gave 90 responses). This allows to fit mixed-effects logistic regressions on recognition data. If any statistics is to be computed at the participant level, averaging data by participant (column "ID") is recommended first.<br><br>Recognition responses are reported in column "Response" (1 refers to "yes", 0 refers to "no"). CWMS is Verbal Working Memory. GDS is Geriatric Depression Scale. In column "Type", "trg_inco" and "fa_inco" refers to items presented at the very beginning and end of the encoding procedure only to avoid primacy or recency effects; "gapfilling" refers to gap-filling distractors, "causal" refers to causal antecedent distractors, "target" refers to target (or "hit") items.
DOI: 10.7284/128307
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1718 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128301
title: Gravimeter data collected during research cruise RR1718 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128304
title: INS (Inertial Navigation System) data collected during research cruise RR1718 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7308518
title: GOL21-bonafide-piRNAs-24-29nt.txt

description: <i>An. coluzzii </i>bonafide piRNAs from the GOL21 library prepared from ovaries. the The GOL21 library is described in https://www.ncbi.nlm.nih.gov/pubmed/26617674
DOI: 10.6084/m9.figshare.7308518.v1
title: GOL21-bonafide-piRNAs-24-29nt.txt

description: <i>An. coluzzii </i>bonafide piRNAs from the GOL21 library prepared from ovaries. the The GOL21 library is described in https://www.ncbi.nlm.nih.gov/pubmed/26617674
DOI: 10.7284/128308
title: INS (Inertial Navigation System) data collected during research cruise RR1718 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7308467
title: Supplementary Material for: Effect of Hawthorn Leaf Flavonoids in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome in Rats

description: <b><i>Objective:</i></b> To evaluate the potential beneficial effects of hawthorn leaf flavonoids (HLF) against polycystic ovary syndrome (PCOS) in a rat model of disease and elucidate the underlying molecular mechanism. <b><i>Methods:</i></b> The PCOS model was established by subcutaneous injection of dehydroepiandrosterone (DHEA, 60 mg/kg/day) for 21 consecutive days. HLF (200 mg/kg/day) were orally administered simultaneously or after the injection. The body weight was regularly monitored and recorded. The ovaries were weighed and histologically examined via hematoxylin and eosin staining. The number of follicular cysts was counted under a light microscope. The serous hormones were measured using enzyme-linked immunosorbent assay kits. Insulin resistance (IR) was calculated as HOMA-IR = fasting insulin (µU/L) × fasting glucose (mM)/22.5. The estrous cycle was determined by vaginal smear. The relative expression of tumor necrosis factor-α and interleukin-6 was measured by real-time polymerase chain reaction. The superoxide dismutase activity and malondialdehyde content was determined using commercially available kits. <b><i>Results:</i></b> DHEA induced a significant increase of body weight, ovary weight, number of follicular cysts, serous hormones, IR, inflammatory cytokines, and oxidative stress, and it also impaired the estrous cycle. Oral administration of HLF greatly alleviated these complications. Little toxicity of HLF was observed in our rat model. <b><i>Conclusion:</i></b> HLF manifest protective effects against PCOS progression in the animal model, which may hold great promise for future clinical applications.
DOI: 10.17608/k6.auckland.7308455
title: eQTL associations on Chromosome 22

description: Disease-associated SNPs on chromosome 22 were tested for eQTL associations using GTEx analysis (v7) and the CODeS3D pipeline. This dataset contains significant associations (FDR  0.05) from both methods.
DOI: 10.7284/128302
title: Magnetometer data collected during research cruise RR1718 using a Marine Magnetics SeaSPY instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17608/k6.auckland.7308455.v1
title: eQTL associations on Chromosome 22

description: Disease-associated SNPs on chromosome 22 were tested for eQTL associations using GTEx analysis (v7) and the CODeS3D pipeline. This dataset contains significant associations (FDR  0.05) from both methods.
DOI: 10.7284/128296
title: Meteorological Station data collected during research cruise RR1718 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128299
title: Multibeam Echosounder data collected during research cruise RR1718 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128410
title: Multibeam Echosounder data collected during research cruise RR1718 using a Kongsberg EM122 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7308356
title: Supplementary files for the manuscript "Phonocardiography and photoplethysmography with simple Arduino setups to support interdisciplinary STEM education"

description: We show and analyze several ways how heart function can be monitored by studying photoplethysmograph and phonocardiograph signals with very simple Arduino-based setups in high-school or university education. We have carefully analyzed and demonstrated the problems of widely used solutions and we show the technically correct ways which are surprisingly rare and particularly important in high quality STEM education. See the references for additional information and videos.Published in IEEE Access (http://doi.org/10.1109/ACCESS.2019.2926519)<br>
DOI: 10.7284/128303
title: Winch data collected during research cruise RR1718 using a Markey DUTW-9-11 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/128306
title: Winch data collected during research cruise RR1718 using a Markey DUSH-5 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127027
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise RR1719 using a Hawaii UHDAS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127039
title: Expendable Probe data collected during research cruise RR1719 using a Turo Quoll instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7306817
title: Additional file 5_Wastewater_Evidence base

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains a searchable systematic map database of ecotechnologies for recovery and reuse of carbon and nutrients in wastewater sector
DOI: 10.6084/m9.figshare.7306817.v1
title: Additional file 5_Wastewater_Evidence base

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains a searchable systematic map database of ecotechnologies for recovery and reuse of carbon and nutrients in wastewater sector
DOI: 10.7284/127028
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1719 using a Furuno GP-150 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7306811
title: Additional file 4_Wastewater_List of articles excluded at full text

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains list of articles excluded at full text.
DOI: 10.6084/m9.figshare.7306820.v1
title: An Ecopath with Ecosim model of Lake Victoria to simulate ecosystem dynamics between 1960-2015

description: This is an Ecopath with Ecosim model of Lake Victoria (East Africa) parameterised to represent ecosystem state in 1960, and calibrated with historical time series data to reproduce biomass dynamics observed between 1960 and 2015.
DOI: 10.6084/m9.figshare.7306811.v1
title: Additional file 4_Wastewater_List of articles excluded at full text

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains list of articles excluded at full text.
DOI: 10.6084/m9.figshare.7306820.v2
title: An Ecopath with Ecosim model of Lake Victoria to simulate ecosystem dynamics between 1960 and 2015

description: This is an Ecopath with Ecosim model of Lake Victoria (East Africa) parameterised to represent ecosystem state in 1960, and calibrated with historical time series data to reproduce biomass dynamics observed between 1960 and 2015.
DOI: 10.7284/127030
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1719 using a Ashtech ADU2 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7306805
title: Additional file 3_Wastewater_List of unretrievable articles

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains a list of unretrievable articles.
DOI: 10.7284/127037
title: GNSS (Global Navigation Satellite System) data collected during research cruise RR1719 using a Trimble SPS351 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127031
title: Gravimeter data collected during research cruise RR1719 using a Bell BGM-3 instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127035
title: HDSS (Hydrographic Doppler Sonar System) data collected during research cruise RR1719 using a SIO HDSS instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127034
title: INS (Inertial Navigation System) data collected during research cruise RR1719 using a iXSea Phins instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7306784
title: C. PIPIENS MINION RAW SEQUENCES

description: <b>minION long-read sequences for C. pipiens mosquitoes</b>.<br>Details of the study and a reproducible bioinformatics workflow:<br>http://merenlab.org/data/wolbachia-plasmid/<br><br>All public data files in this collection:<br>https://figshare.com/projects/A_Wolbachia_Plasmid_by_Reveillaud_and_Bordenstein_et_al_2018_/32069
DOI: 10.6084/m9.figshare.7306772
title: Additional file 2_Wastewater_List of benchmark studies

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains a list of bechmark studies used to test the comprehensiveness of the search.
DOI: 10.7284/127038
title: INS (Inertial Navigation System) data collected during research cruise RR1719 using a Kongsberg Seapath 320+ instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7306769
title: Supplementary Material for: Lesions Mimicking Melanoma at Dermoscopy Confirmed Basal Cell Carcinoma: Evaluation with Reflectance Confocal Microscopy

description: <b><i>Background:</i></b> Atypical basal cell carcinoma (BCC), characterized by equivocal dermoscopic features typical of malignant melanoma (MM), can be difficult to diagnose. Reflectance confocal microscopy (RCM) enables in vivo<i></i> imaging at nearly histological resolution. <b><i>Objectives:</i></b> To evaluate with RCM atypical melanocytic lesions identified in dermoscopy, according to common RCM criteria for the differential diagnosis of BCC, and to identify representative RCM parameters for superficial (sBCCs) and nonsuperficial (nsBCCs) basal cell carcinomas (BCCs). <b><i>Methods:</i></b><i></i> A retrospective analysis of consecutive patients evaluated with RCM, selecting excised lesions classified at dermoscopy with ≥1 score from the re visited 7-point checklist, mimicking melanoma, registered between 2010 and 2016. Cluster analysis identified BCC subclassifications. <b><i>Results:</i></b> Of 178 atypical lesions, 34 lesions were diagnosed as BCCs with RCM. Lesions were confirmed BCCs with histopathology. Dermoscopic features included atypical network (55.9%) and regression structures (35.5%) associated with sBCCs, and an atypical vascular pattern (58.8%) and irregular blotches (58.8%) with nsBCCs. Hierarchical cluster analysis identified 2 clusters: cluster 1 (100% sBCCs) was characterized by the presence of cords connected to the epidermis (90%, p &lt; 0.001), tumor islands located in the epidermis (100%, <i>p</i> &lt; 0.001), smaller vascular diameter (100%, <i>p</i> &lt; 0.001) and solar elastosis (90%, <i>p</i> = 0.017), and cluster 2 (nsBCCs 85%) was defined by the dermic location of tumor islands (87.5%, <i>p</i> &lt; 0.001) with branch-like structures (70.8%, <i>p</i> = 0.007) and surrounding collagen (83.3%, <i>p</i> = 0.012), peripheral palisading (83.3%, <i>p</i> = 0.012) and coiled vascular morphology (79.2%, <i>p</i> &lt; 0.001) with a larger vascular diameter (50%, <i>p</i> &lt; 0.001). <b><i>Conclusions:</i></b> RCM is able to diagnose BCCs mimicking melanoma at dermoscopy and seems able to identify sBCCs and nsBCCs.
DOI: 10.6084/m9.figshare.7306772.v1
title: Additional file 2_Wastewater_List of benchmark studies

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map” The file contains a list of bechmark studies used to test the comprehensiveness of the search.
DOI: 10.6084/m9.figshare.7306763
title: Additional file 1_Wastewater_ROSES for Systematic Map Reports

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map”<br>The file contains ROSES form for systematic maps.
DOI: 10.7284/127032
title: Magnetometer data collected during research cruise RR1719 using a Marine Magnetics SeaSPY instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7306763.v1
title: Additional file 1_Wastewater_ROSES for Systematic Map Reports

description: This file belongs to a following manuscript: “What evidence exists relating to potential ecotechnologies for the recycling of carbon and nutrients from wastewater? A systematic map”<br>The file contains ROSES form for systematic maps.
DOI: 10.7284/127026
title: Meteorological Station data collected during research cruise RR1719 using a SIO MET-System instrument system onboard the platform RV Roger Revelle

description: Original (unprocessed) data collected during a Field_expedition