cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2f4ndn
title: CCDC 2238801: Experimental Crystal Structure Determination

description: Related Article: Paweł Pakulski, Michał Magott, Szymon Chorazy, Marcin Sarewicz, Monika Srebro-Hooper, Dominika Tabor, Łukasz Łapok, Dariusz Szczepanik, Selvan Demir, Dawid Pinkowicz|2024|Chem (Cell Press)|10|971|doi:10.1016/j.chempr.2023.12.024
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f4nfp
title: CCDC 2238802: Experimental Crystal Structure Determination

description: Related Article: Paweł Pakulski, Michał Magott, Szymon Chorazy, Marcin Sarewicz, Monika Srebro-Hooper, Dominika Tabor, Łukasz Łapok, Dariusz Szczepanik, Selvan Demir, Dawid Pinkowicz|2024|Chem (Cell Press)|10|971|doi:10.1016/j.chempr.2023.12.024
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.xpkpgr
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bothriospermum chinense Bunge",
 "Country is China",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true"
 ]
}

 The dataset includes 232 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084071-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2fsgvk
title: CCDC 2257849: Experimental Crystal Structure Determination

description: Related Article: Nataliya S. Rukk, Grigorii A. Buzanov, Nikita S. Kabernik, Lyudmila G. Kuzmina, Nikolay N. Efimov, Ravshan S. Shamsiev, Vladimir A. Lazarenko, Taisiya V. Ivanova, Evgeniya I. Kozhukhova, Svetlana K. Belus, Vasilii M. Retivov, Alexandra I. Ivanova|2024|Inorg.Chim.Acta|566|122007|doi:10.1016/j.ica.2024.122007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fsgwl
title: CCDC 2257850: Experimental Crystal Structure Determination

description: Related Article: Nataliya S. Rukk, Grigorii A. Buzanov, Nikita S. Kabernik, Lyudmila G. Kuzmina, Nikolay N. Efimov, Ravshan S. Shamsiev, Vladimir A. Lazarenko, Taisiya V. Ivanova, Evgeniya I. Kozhukhova, Svetlana K. Belus, Vasilii M. Retivov, Alexandra I. Ivanova|2024|Inorg.Chim.Acta|566|122007|doi:10.1016/j.ica.2024.122007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fsh0r
title: CCDC 2257854: Experimental Crystal Structure Determination

description: Related Article: Nataliya S. Rukk, Grigorii A. Buzanov, Nikita S. Kabernik, Lyudmila G. Kuzmina, Nikolay N. Efimov, Ravshan S. Shamsiev, Vladimir A. Lazarenko, Taisiya V. Ivanova, Evgeniya I. Kozhukhova, Svetlana K. Belus, Vasilii M. Retivov, Alexandra I. Ivanova|2024|Inorg.Chim.Acta|566|122007|doi:10.1016/j.ica.2024.122007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.b2ds3m
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psiadia depauperata Humbert"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084070-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpnycf
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psychotria peteri E.M.A.Petit"
 ]
}

 The dataset includes 75 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084072-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvf5rd
title: Occurrence Download

description: A dataset containing 2718379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OrderKey is Odonata"
 ]
}

 The dataset includes 2718379 records from 5352 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083752-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.80ce9r
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "HasCoordinate is true",
 "TaxonKey is Rhodoleia Champ. ex Hook.f.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007969-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngpvgh
title: Occurrence Download

description: A dataset containing 1589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Clangula hyemalis (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 1589 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243888-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8e3ewe
title: Occurrence Download

description: A dataset containing 967 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium pitcheri (Torr. ex Eaton) Torr. & A.Gray"
 ]
}

 The dataset includes 967 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0323344-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqtrpk
title: Occurrence Download

description: A dataset containing 129834 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Henicorhina leucophrys (Tschudi, 1844)"
 ]
}

 The dataset includes 129834 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0312980-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxxwdl
title: Occurrence Download

description: A dataset containing 803 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "TaxonKey is Trombidiformes",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 803 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007969-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjwrd3
title: Occurrence Download

description: A dataset containing 1784 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bryozoa, Echinoidea, Pycnogonida, Bivalvia)",
 "Geometry POLYGON((162 -74.5,170 -74.5,170 -78,162 -78,162 -74.5))",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1784 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036140-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9ttu2
title: Occurrence Download

description: A dataset containing 7849 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Système d'Information sur la Nature et les Paysages d'Ile de France - Données du naturaliste Piolain Julien provenant de la base de donnée du SINP Île-de-France CETTIA"
 ]
}

 The dataset includes 7849 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0232175-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzwnms
title: Occurrence Download

description: A dataset containing 2017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lobaria amplissima (Scop.) Forssell",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 2017 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000755-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfrpl5
title: Occurrence Download

description: A dataset containing 3256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Megascops Kaup, 1848",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3256 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007969-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sz3vw7
title: Occurrence Download

description: A dataset containing 27290 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bird Monitoring Data"
 ]
}

 The dataset includes 27290 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052094-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gx8r3r
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alloposidae"
 ]
}

 The dataset includes 212 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0246107-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lbcilp
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Priodontes maximus (Kerr, 1792)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000756-150216165555722/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnma4m
title: Occurrence Download

description: A dataset containing 4490 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Rocky reef biodiversity survey: Punta Pardelas, Argentina"
 ]
}

 The dataset includes 4490 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318174-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhevm8
title: Occurrence Download

description: A dataset containing 4293794 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haemorhous mexicanus (P.L.Statius Müller, 1776)"
 ]
}

 The dataset includes 4293794 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007969-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t34wex
title: Occurrence Download

description: A dataset containing 2140211 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Campanula rotundifolia L., Carex flacca Schreb., Conocarpus lancifolius Engl., Lapsana communis L., Lupinus polyphyllus Lindl., Potentilla reptans L., Senecio vulgaris L.)"
 ]
}

 The dataset includes 2140211 records from 1558 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036141-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.13363988
title: Additional file 7 of Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals

description: Additional file 7: Table S6. The primers for IT cloning.
DOI: 10.6084/m9.figshare.21228778.v1
title: Additional file 2 of Identification of effector CEP112 that promotes the infection of necrotrophic Alternaria solani

description: Additional file 2.
DOI: 10.6084/m9.figshare.21228871.v1
title: Additional file 1 of Identification of a hippocampal lncRNA-regulating network in a natural aging rat model

description: Additional file 1: The dramatically differentially expressed mRNAs in the aging and 9-month control groups.
DOI: 10.6084/m9.figshare.13363967.v1
title: Additional file 11 of Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals

description: Additional file 11.
DOI: 10.6084/m9.figshare.13888923.v1
title: Additional file 6 of Genome-wide identification of chitinase genes in Thalassiosira pseudonana and analysis of their expression under abiotic stresses

description: Additional file 6: Table S6. Top 3D models predicted of of the TpChi proteins.
DOI: 10.6084/m9.figshare.13363973.v1
title: Additional file 2 of Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals

description: Additional file 2: Table S1. Taxonomic distribution of ITs.
DOI: 10.6084/m9.figshare.21228874.v1
title: Additional file 2 of Identification of a hippocampal lncRNA-regulating network in a natural aging rat model

description: Additional file 2: The dramatically differentially expressed lncRNAs in the aging and 9-month control groups.
DOI: 10.6084/m9.figshare.13364024
title: Additional file 12 of Prognostic value of Glypican family genes in early-stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy and possible mechanisms

description: Additional file 12: Table 12. Gene Set Enrichment Analysis results of c6 enrichment for low Glypican2 expression in The Cancer Genome Atlas database.
DOI: 10.6084/m9.figshare.13888935
title: Additional file 9 of Genome-wide identification of chitinase genes in Thalassiosira pseudonana and analysis of their expression under abiotic stresses

description: Additional file 9: Table S9. Primers used in qRT-PCR studies.
DOI: 10.6084/m9.figshare.13889305.v1
title: Additional file 4 of Integrated analyses of the transcriptome and small RNA of the hemiparasitic plant Monochasma savatieri before and after establishment of parasite-host association

description: Additional file 4. List of DEmiRs among different comparisons.
DOI: 10.6084/m9.figshare.13363994.v1
title: Additional file 9 of Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals

description: Additional file 9.
DOI: 10.6084/m9.figshare.13889311
title: Additional file 6 of Integrated analyses of the transcriptome and small RNA of the hemiparasitic plant Monochasma savatieri before and after establishment of parasite-host association

description: Additional file 6. Co-differentially expressed miRNAs and targets in the BC/AC and BZ/AZ comparisons.
DOI: 10.6084/m9.figshare.21228784.v1
title: Additional file 4 of Identification of effector CEP112 that promotes the infection of necrotrophic Alternaria solani

description: Additional file 4.
DOI: 10.6084/m9.figshare.21228778
title: Additional file 2 of Identification of effector CEP112 that promotes the infection of necrotrophic Alternaria solani

description: Additional file 2.
DOI: 10.6084/m9.figshare.13363991.v1
title: Additional file 8 of Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals

description: Additional file 8: Table S7. Primers for insertion libraries.
DOI: 10.6084/m9.figshare.13364006.v1
title: Additional file 2 of Expressing a cytosolic pyruvate dehydrogenase complex to increase free fatty acid production in Saccharomyces cerevisiae

description: Additional file 2. Dataset S1. Primers, strains and plasmids used and constructed in this study.
DOI: 10.6084/m9.figshare.13363994
title: Additional file 9 of Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals

description: Additional file 9.
DOI: 10.6084/m9.figshare.13364418
title: Additional file 5 of Combined proteomics, metabolomics and physiological analyses of rice growth and grain yield with heavy nitrogen application before and after drought

description: Additional file 5: Dataset S1. Information on DEPs identified of ‘Wufengyou 286’ under heavy nitrogen application before and after drought.
DOI: 10.6084/m9.figshare.13889040
title: Additional file 3 of Identification of a prognostic and therapeutic immune signature associated with hepatocellular carcinoma

description: Additional file 3: TIDE-LIHC.
DOI: 10.6084/m9.figshare.13889292.v1
title: Additional file 6 of Consensus module analysis of abdominal fat deposition across multiple broiler lines

description: Additional file 6: Table S3. Functional enrichment correlated with genes within eight consensus modules.
DOI: 10.6084/m9.figshare.13888926
title: Additional file 7 of Genome-wide identification of chitinase genes in Thalassiosira pseudonana and analysis of their expression under abiotic stresses

description: Additional file 7: Table S7. Keywords used for searching T. pseudonana chitinase genes on JGI.
DOI: 10.5281/zenodo.10144805
title: Estimating vegetation water content from Sentinel-1 C-band SAR data over savanna and grassland ecosystems

description: Data made available from the research article "Estimating vegetation water content from Sentinel-1 C-band SAR data over savanna and grassland ecosystems", published at XXX. A metadata file describing the dataset is available and a full description of how the data was generated can be found in the research article.
DOI: 10.5281/zenodo.10419237
title: Estimating vegetation water content from Sentinel-1 C-band SAR data over savanna and grassland ecosystems

description: Data made available from the research article "Estimating vegetation water content from Sentinel-1 C-band SAR data over savanna and grassland ecosystems", published at Environmental Research Letters. A metadata file describing the dataset is available and a full description of how the data was generated can be found in the research article.
DOI: 10.5281/zenodo.8071766
title: Estimating vegetation water content from Sentinel-1 C-band SAR data over savanna and grassland ecosystems

description: Data made available from the research article "Estimating vegetation water content from Sentinel-1 C-band SAR data over savanna and grassland ecosystems", published at <strong>XXX</strong>. A metadata file describing the dataset is available and a full description of how the data was generated can be found in the research article.
DOI: 10.6084/m9.figshare.21228784
title: Additional file 4 of Identification of effector CEP112 that promotes the infection of necrotrophic Alternaria solani

description: Additional file 4.
DOI: 10.6084/m9.figshare.21228781
title: Additional file 3 of Identification of effector CEP112 that promotes the infection of necrotrophic Alternaria solani

description: Additional file 3.
DOI: 10.5281/zenodo.10659649
title: Preeclampsia Dataset

description: The first dataset is the preeclampsia dataset, in which 19 profiles of blood samples were collected from 9.7 million. The data are from 45 women throughout their pregnancies, which include 33 features measured per cell. The clinical outcome of the covariate for this dataset was cell gestational age, which ranged from 8 to 28 weeks. The dataset is applied in CytoCo-set evaluation.

Here is the file structure that fits in CytoCo-set input format (symbol "X(____)X" defined as file name describe):

data folder



fcs_info.csv

filenames_X(trials_number)X.json

pree_fcs



all



X(sample_file_name)X.fcs

test_labels_X(trials_number)X.csv

train_labels_X(trials_number)X.csv



marker.csv



tripletlists_X(covariate)X_X(trials_number)X



X(covariate)X_tripletlist_subpick_test_rffX(medianpooling_or_maxpooling)X_sameX(same_threhold_percange)X_diffX(diff_threhold_percange)X.txt

X(covariate)X_tripletlist_subpick_trainval_rffX(medianpooling_or_maxpooling)X_sameX(same_threhold_percange)X_diffX(diff_threhold_percange)X.txt




 

The dataset uploaded all the sample's raw features data (fcs file) and some file examples. fcs_info.csv records all sample's true labels and covariates.
DOI: 10.5281/zenodo.10659650
title: Preeclampsia Dataset

description: The first dataset is the preeclampsia dataset, in which 19 profiles of blood samples were collected from 9.7 million. The data are from 45 women throughout their pregnancies, which include 33 features measured per cell. The clinical outcome of the covariate for this dataset was cell gestational age, which ranged from 8 to 28 weeks. The dataset is applied in CytoCo-set evaluation.

Here is the file structure that fits in CytoCo-set input format (symbol "X(____)X" defined as file name describe):

data folder



fcs_info.csv

filenames_X(trials_number)X.json

pree_fcs



all



X(sample_file_name)X.fcs

test_labels_X(trials_number)X.csv

train_labels_X(trials_number)X.csv



marker.csv



tripletlists_X(covariate)X_X(trials_number)X



X(covariate)X_tripletlist_subpick_test_rffX(medianpooling_or_maxpooling)X_sameX(same_threhold_percange)X_diffX(diff_threhold_percange)X.txt

X(covariate)X_tripletlist_subpick_trainval_rffX(medianpooling_or_maxpooling)X_sameX(same_threhold_percange)X_diffX(diff_threhold_percange)X.txt




 

The dataset uploaded all the sample's raw features data (fcs file) and some file examples. fcs_info.csv records all sample's true labels and covariates.