cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.k0734
title: Data from: Genetic diversity, breed composition and admixture of Kenyan domestic pigs

description: The genetic diversity of African pigs, whether domestic or wild has not
 been widely studied and there is very limited published information
 available. Available data suggests that African domestic pigs originate
 from different domestication centers as opposed to international
 commercial breeds. We evaluated two domestic pig populations in Western
 Kenya, in order to characterize the genetic diversity, breed composition
 and admixture of the pigs in an area known to be endemic for African swine
 fever (ASF). One of the reasons for characterizing these specific
 populations is the fact that a proportion of indigenous pigs have tested
 ASF virus (ASFv) positive but do not present with clinical symptoms of
 disease indicating some form of tolerance to infection. Pigs were
 genotyped using either the porcine SNP60 or SNP80 chip. Village pigs were
 sourced from Busia and Homabay counties in Kenya. Because bush pigs
 (Potamochoerus larvatus) and warthogs (Phacochoerus spp.) are known to be
 tolerant to ASFv infection (exhibiting no clinical symptoms despite
 infection), they were included in the study to assess whether domestic
 pigs have similar genomic signatures. Additionally, samples representing
 European wild boar and international commercial breeds were included as
 references, given their potential contribution to the genetic make-up of
 the target domestic populations. The data indicate that village pigs in
 Busia are a non-homogenous admixed population with significant
 introgression of genes from international commercial breeds. Pigs from
 Homabay by contrast, represent a homogenous population with a “local
 indigenous’ composition that is distinct from the international breeds,
 and clusters more closely with the European wild boar than African wild
 pigs. Interestingly, village pigs from Busia that tested negative by PCR
 for ASFv genotype IX, had significantly higher local ancestry
 (&gt;54%) compared to those testing positive, which contained more
 commercial breed gene introgression. This may have implication for breed
 selection and utilization in ASF endemic areas. A genome wide scan
 detected several regions under preferential selection with signatures for
 pigs from Busia and Homabay being very distinct. Additionally, there was
 no similarity in specific genes under selection between the wild pigs and
 domestic pigs despite having some broad areas under similar selection
 signatures. These results provide a basis to explore possible genetic
 determinants underlying tolerance to infection by ASFv genotypes and
 suggests multiple pathways for genetically mediated ASFv tolerance given
 the diversity of selection signatures observed among the populations
 studied.
description: Data for Kenyan
 pigsThis Zip file has a
 README file that provides a complete description of the
 data.BusiaPig_PLOS_Data.zip
DOI: 10.5061/dryad.r01h2
title: Data from: Host associated bacterial community succession during amphibian development

description: Amphibians undergo significant developmental changes during their life
 cycle, as they typically move from a primarily aquatic environment to a
 more terrestrial one. Amphibian skin is a mucosal tissue that assembles
 communities of symbiotic microbiota. However, it is currently not well
 understood as to where amphibians acquire their skin symbionts, and
 whether the sources of microbial symbionts change throughout development.
 In this study, we utilized data collected from four wild boreal toad
 populations (Anaxyrus boreas); specifically, we sampled the skin bacterial
 communities during toad development, including eggs, tadpoles, subadults,
 and adults as well as environmental sources of bacteria (water, aquatic
 sediment, and soil). Using 16S rRNA marker gene profiling coupled with
 SourceTracker, we show that while primary environmental sources remained
 constant throughout the life cycle, secondary sources of boreal toad
 symbionts significantly changed with development. We found that toad skin
 communities changed predictably across development, and that two
 developmental disturbance events (egg hatching and metamorphosis) dictated
 major changes. Toad skin communities assembled to alternative stable
 states following each of these developmental disturbances. Using the
 predicted average rRNA operon copy number of the communities at each life
 stage, we showed how the skin bacterial communities undergo a successional
 pattern whereby ‘fast-growing’ (copiotroph) generalist bacteria dominate
 first before ‘slow-growing’ (oligotroph) specialized bacteria take over.
 Our study highlights how host-associated bacterial community assembly is
 tightly coupled to host development and that host-associated communities
 demonstrate successional patterns akin to those observed in free-living
 bacteria as well as macrofaunal communities.
description: OTU_TableOTU Table in a *.txt format used for data processingref_only_OTUs_with_taxa.txtToad MetadataMetadata used for data processing in a *.txt format.toad_map_new.txt
DOI: 10.5061/dryad.mc8v5
title: Data from: Invasion strategies in round goby (Neogobius melanostomus): is bigger really better?

description: Few studies have systematically investigated mid- or long-term temporal
 changes of biological characteristics in invasive alien species
 considering the different phases of an invasion. We studied the invasion
 performance of one of the most invasive species worldwide, the round goby
 Neogobius melanostomus, from total absence over first occurrence until
 establishment from 2010 to 2015 in the upper Danube River. After an
 upstream movement of the invasion front of about 30 river km within four
 years, the pattern that round goby pioneering populations significantly
 differ from longer established ones has been confirmed: Pioneering
 populations at the invasion front comprised more females than males, and
 adult specimens with a larger body size compared to those at longer
 inhabited areas. On the population-level, the proportion of juveniles
 increased with time since invasion. The results of this study provide
 support for the previously postulated ´bigger is better´ and ´individual
 trait utility´ hypotheses explaining invasion success in round goby.
 Pioneering invaders with their greater exploratory behavior, highly
 adaptive phenotypic plasticity and increased competitive ability seem to
 act as prime emperors of new habitats, strongly following and benefiting
 from man-made river-bank structures.
description: PAS fishing
 dataPoint abundance sampling
 (PAS) at three areas (stages) of the round goby invasion of the upper
 Danube River, i.e. date and season of sampling, river side, river
 kilometre, name of the river stretch, PAS point number of the samplig site
 and the caught fish species at the corresponding PAS. The second table
 gives the total length (TL), sex, weight, conodition factors (CF) and
 estimates of parasite infection rates (ectoparasites) of all sampled round
 gobies.Brandner et al. 2017 - PAS goby
 fishing data.xlsx
DOI: 10.5061/dryad.63821
title: Data from: Study on the optimization of the deposition rate of planetary GaN-MOCVD films based on CFD simulation and the corresponding surface model

description: Metal-organic chemical vapour deposition (MOCVD) is a key technique for
 fabricating GaN thin film structures for light-emitting and semiconductor
 laser diodes. Film uniformity is an important index to measure equipment
 performance and chip processes. This paper introduces a method to improve
 the quality of thin films by optimizing the rotation speed of different
 substrates of a model consisting of a planetary with seven 6-inch wafers
 for the planetary GaN-MOCVD. A numerical solution to the transient state
 at low pressure is obtained using computational fluid dynamics. To
 evaluate the role of the different zone speeds on the growth uniformity,
 single factor analysis is introduced. The results show that the growth
 rate and uniformity are strongly related to the rotational speed. Next, a
 response surface model was constructed by using the variables and the
 corresponding simulation results. The optimized combination of the
 matching of different speeds is also proposed as a useful reference for
 applications in industry, obtained by a response surface model and genetic
 algorithm with a balance between the growth rate and the growth
 uniformity. This method can save time, and the optimization can obtain the
 most uniform and highest thin film quality.
description: Supporting Information
 for Study on the optimization of the deposition rate of planetary
 GaN-MOCVD films based on CFD simulation and the corresponding surface
 modelThe Table S1 is about
 Eight sets of results based on RSM model predictions and CFD simulation;
 The Figures S1-S3 are about temperature profile with different regions and
 different speeds; The Figures S3-S15 are about mass fractions of
 Ga-containing with different regions and different
 speeds.s-1.docx
DOI: 10.5061/dryad.q90rp
title: Data from: Comparative limb proportions reveal differential locomotor morphofunctions of alligatoroids and crocodyloids

description: Although two major clades of crocodylians (Alligatoroidea and
 Crocodyloidea) were split during the Cretaceous, relatively few
 morphological and functional differences between them have been known. In
 addition, interaction of multiple morphofunctional systems that
 differentiated their ecology has barely been assessed. In this study, we
 examined the limb proportions of crocodylians to infer the differences of
 locomotor functions between alligatoroids and crocodyloids, and tested the
 correlation of locomotor and feeding morphofunctions. Our analyses
 revealed crocodyloids including Gavialis have relatively long stylopodia
 (humerus and femur) than alligatoroids, indicating that two groups may
 differ in locomotor functions. Fossil evidence suggested that
 alligatoroids have retained short stylopodia since the early stage of
 their evolution. Furthermore, rostral shape, an indicator of trophic
 function, is correlated with limb proportions, where slender-snouted
 piscivorous taxa have relatively long stylopodia and short overall limbs.
 In combination, trophic and locomotor functions might differently delimit
 the ecological opportunity of alligatoroids and crocodyloids in the
 evolution of crocodylians.
description: Fig.
 S1electronic supplementary
 material, figure S1Tables
 S1-S6electronic supplementary
 material, table S1-S6Supplementary
 referenceselectronic supplementary
 material, supplementary references
DOI: 10.48331/scielodata.av0how/ljdtvj
title: Audiência de Custodia - Dados da coleta - 2024.tab

description: Audiência de custódia: dados colhidos das audiência de custódias realizadas de julho a dezembro de 2023, no Município de Araraquara/SP.

Os autores iniciaram a análise em janeiro de 2024 e terminaram em dezembro de 2024.
DOI: 10.5061/dryad.96m41
title: Data from: The curious case of Bradypus variegatus sloths: populations in threatened habitats are biodiversity components needing protection

description: Studying Neotropical wild populations is of particular interest. While
 this region is facing an escalating habitat degradation, it also has
 remarkable biodiversity levels, whose origin we are only beginning to
 understand. A myriad of processes might have had idiosyncratic effects on
 its numerous species. Within the hottest Neotropical biodiversity hotspot,
 the Atlantic Forest (AF), species and genetic diversities are organized
 latitudinally, with decreasing diversity levels southwards. Bradypus
 variegatus, the brown-throated three-toed sloth, was one of the first
 species observed to present such pattern. Moreover, within AF, B.
 variegatus populations seem to be geographically isolated and genetically
 differentiated. Whether AF B. variegatus isolation, differentiation, and
 loss of genetic diversity are historical or contemporary
 (anthropogenic-driven), result from species-specific or general historical
 events, and if this is of conservation concern remains unclear. Here, we
 combine micro-evolutionary, multilocus, and high-throughput sequencing
 approaches to detail the processes responsible for the patterns of genetic
 diversity on B. variegatus populations in AF, and further understand AF
 biogeographic history. Few studies made use of similar approaches on
 Neotropical biodiversity. Our results agree with recent re-interpretations
 on the AF refugia model and support a species-specific refugium in
 southern AF, characterized by a metapopulation formation. Finally, we
 present compelling evidences of the need for conservation actions on AF B.
 variegatus populations, by comparing genetic diversity levels between
 populations of different Bradypus species. As far as we know, this is the
 most comprehensive assessment on Bradypus nuclear DNA diversity.
description: Bradypus_microsatellitesMicrosatellite genotypes. Missing data is coded as 0.Bradypus_dryad.xlsx
DOI: 10.48331/scielodata.av0how/thtop2
title: RDBPP_Readme - 23.01.2026.pdf

description: Principais informações dos autores e dos aspectos metodológicos.
DOI: 10.17632/sr6dd6czwd
title: Conhecimentos, atitudes e práticas de profissionais sobre o tratamento preventivo da tuberculose: estudo quase experimental

description: Este conjunto de dados reúne as informações que fundamentam o estudo “Atividade educativa sobre tratamento preventivo da tuberculose em pessoas com HIV para profissionais prescritores: estudo quase-experimental”, cujo objetivo foi avaliar o efeito de uma intervenção educativa sobre os conhecimentos, as atitudes e as práticas (CAP) de profissionais de saúde habilitados à prescrição do tratamento preventivo da tuberculose (TPT) em pessoas vivendo com HIV, no contexto brasileiro.
DOI: 10.48331/scielodata.av0how
title: Audiência de Custódia: análise dos dados de julho a dezembro de 2023 colhidos no Município de Araraquara/SP

description: Os autores analisaram as audiências de custódia realizadas no Município de Araraquara/SP. Dois recortes foram adotados: (a) temporal: apenas audiências de custódia realizadas durante o período de julho a dezembro de 2023; (b) natureza do crime: apenas crimes, em tese, praticados no âmbito da violência doméstica. 

O início da coleta dos dados foi em janeiro de 2024 e o término foi em dezembro de 2024. 

Para a coleta de dados, os autores encaminharam um ofício à Delegacia de Defesa da Mulher de Araraquara/SP (DDM) solicitando a relação dos casos em que houve prisão em flagrante por crimes supostamente praticados no contexto de violência doméstica, somente no período de julho a dezembro de 2023.

Em resposta, a DDM identificou os números dos respectivos processos — protegidos por sigilo de justiça — os quais foram extraídos em formato PDF por meio do sistema interno da própria instituição e posteriormente disponibilizados aos pesquisadores.
A partir disso, foram encontrados 55 (cinquenta e cinco) processos que atendiam aos seguintes critérios: (1) temporal: recorte no período de julho a dezembro de 2023; (2) espacial: crimes, em tese, cometidos no município de Araraquara/SP; (3) natureza do delito: violência doméstica; (4) área: realizado com dados fornecidos após levantamento na DDM de Araraquara/SP.

Na sequência, os autores criaram uma base de dados com a separação por: (1) número de ordem; (2) número do processo; (3) vara de origem; (4) e data da audiência de custódia para dar início às observações de cada processo. Após a sistematização dos dados, os autores iniciaram as observações dos autos de cada processo. Ao longo da análise, os autores separaram sistematizaram 13 (treze) resultados identificados.

Para identificar os reincidentes e aqueles com maus antecedentes, os autores apenas se pautaram pela própria descrição do juízo quando fundamentou a sua decisão na audiência de custódia. 

Com relação aos tipos penais, os autores analisaram, inicialmente, a descrição do boletim de ocorrência e, em momento posterior, a tipificação descrita na decisão do juízo ao realizar a audiência de custódia. 

Em todos os casos localizados não houve alteração do tipo penal entre o boletim de ocorrência e a decisão. Por fim, o relato de violência policial foi aferido com base no depoimento dos custodiados na própria audiência de custódia.
DOI: 10.17632/sr6dd6czwd.1
title: Conhecimentos, atitudes e práticas de profissionais sobre o tratamento preventivo da tuberculose: estudo quase experimental

description: Este conjunto de dados reúne as informações que fundamentam o estudo “Atividade educativa sobre tratamento preventivo da tuberculose em pessoas com HIV para profissionais prescritores: estudo quase-experimental”, cujo objetivo foi avaliar o efeito de uma intervenção educativa sobre os conhecimentos, as atitudes e as práticas (CAP) de profissionais de saúde habilitados à prescrição do tratamento preventivo da tuberculose (TPT) em pessoas vivendo com HIV, no contexto brasileiro.
DOI: 10.5061/dryad.4b60f
title: Data from: Discrepancies in the spiking threshold and frequency sensitivity in nocturnal moths explainable by biases in the 3222 auditory stimulation method45

description: The auditory stimulation method used in experiments on moth A cell(s) is
 generally believed to be adequate to characterize the encoding of bat
 echolocation signals. The stimulation method hosts, though, several
 biases. Their compounded effects can explain a range of discrepancies
 between the reported electrophysiological recordings and significantly
 alter the current interpretation. To test the hypothesis that the bias may
 significantly alter our current understanding of the moth’s auditory
 transducer characteristics, papers using the same auditory stimulation
 method and reporting on either spiking threshold or spiking activity of
 the moth’s A cells were analysed. The consistency of the reported data was
 assessed. A range of corrections issued from best practices and
 theoretical background were applied to the data in an attempt to
 re-interpret the data. We found that it is not possible to apply a
 posteriori corrections to all data and bias. However the corrected data
 indicates that the A cell’s spiking may be (i) independent of the
 repetition rate, (ii) maximum when detecting long and low intensity
 pulses, and (iii) steadily reduce as the bat closes on the moth. These
 observations raise the possibility that a fixed action pattern drives the
 moths’ erratic evasive manoeuvres until the final moment. In depth
 investigation of the potential bias also suggest that the auditory
 transducer’s response may be constant for a larger frequency range than
 thought so far, and provide clues to explain the negative taxis in
 response to the searching bats’ calls detection.
description: 2017_SPL
 meteroutput from the SPL
 meter trajectory2017_meta moth
 paperre-calculated values for
 A cell spikingSPL meter
 trajectorycode in C to recalculate
 the SPL metermain.c
DOI: 10.17632/s3rxkh3vkv
title: Vitamin D serum concentration, atopic dermatitis and geographical factors - review

description: The data represents a review of studies on vitamin D and atopic dermatitis. The data include geographic factors (related to the latitude and standard of living of the places where the studies were conducted) that may affect the association between the serum concentration of vitamin D and the symptoms of atopic dermatitis.
DOI: 10.5061/dryad.66v6k
title: Data from: Community assembly of the ferns of Florida

description: Premise of the study: Many ecological and evolutionary processes shape the
 assembly of organisms into local communities from a regional pool of
 species. We analyzed phylogenetic and functional diversity to understand
 community assembly of the ferns of Florida at two spatial scales. Methods:
 We built a phylogeny for 125 of the 141 species of ferns in Florida using
 five chloroplast markers. We calculated mean pairwise dissimilarity (MPD)
 and mean nearest taxon distance (MNTD) from phylogenetic distances and
 functional trait data for both spatial scales, and compared the results to
 null models to assess significance. Key results: Our results for over vs.
 underdispersion in functional and phylogenetic diversity differed
 depending on spatial scale and metric considered. At the county scale, MPD
 found evidence for phylogenetic overdispersion while MNTD found
 phylogenetic and functional underdispersion, and at the conservation area
 scale, MPD found phylogenetic and functional underdispersion while MNTD
 found evidence only of functional underdispersion. Conclusions: Our
 results are consistent with environmental filtering playing a larger role
 at the smaller, conservation area scale. The smaller spatial units are
 likely composed of fewer local habitat types that are selecting for
 closely related species, with the larger-scale units more likely to be
 composed of multiple habitat types that bring together a larger pool of
 species from across the phylogeny. There are several aspects of fern
 biology, including their unique physiology and water relations and the
 importance of the independent gametophyte stage of the life cycle, which
 would make ferns highly sensitive to local, microhabitat conditions.
description: Florida fern chloroplast
 dataNexus file of aligned
 sequence data from five plastid markers: coding regions atpA, atpB, and
 rbcL, and the spacers rps4-trnS and trnL-trnF125species.nexTree file from BEAST analysisTree file from BEAST analysis of five plastid markers for 125 species of Florida ferns, plus one outgroup (Amborella trichopoda)125species.tre
DOI: 10.17632/s3rxkh3vkv.2
title: Vitamin D serum concentration, atopic dermatitis and geographical factors - review

description: The data represents a review of studies on vitamin D and atopic dermatitis. The data include geographic factors (related to the latitude and standard of living of the places where the studies were conducted) that may affect the association between the serum concentration of vitamin D and the symptoms of atopic dermatitis.
DOI: 10.17632/sbh6m2yw23
title: Hematopoietic stem cells activate a latent differentiation pathway to facilitate recovery after 5-fluorouracil-induced myeloablation

description: Mendeley Data Figures and Tables for Zhang et al., 2025.