cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/styrytrjfv
title: PASCAL programs for identification of lie algebras Part 2: SPLIT — a program to decompose parameter-free and parameter-dependent Lie algebras into direct sums

description: Title of program: SPLIT Catalogue Id: AAXM_v1_0 Nature of problem Given a Lie algebra L with structure constants which are either integers or polynomials with integer coefficients, SPLIT determines whether L can be expressed as a direct sum of Lie algebras of smaller dimension and, if so, calculates the structure constants of its components. Versions of this program held in the CPC repository in Mendeley Data AAXM_v1_0; SPLIT; 10.1016/0010-4655(87)90006-3 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/n62-638-w35
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r18-9cq-6y2
title: †Dalmanelloidea Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19575148.v1
title: HMM reference database for prediction of O-antigen serogroup in V. cholerae genomes

description: To predict the antigenic serogroup, we screened the assemblies against a custom reference database using Hamburger (Williams, 2021). Details of reference sequences and loci are supplied in the 'serogrouping_reference_sequence.xlsx' spreadsheet. In brief, a database was constructed by selecting flanking and marker genes for the operon encoding the <em>V. cholerae</em> O-antigen, with representative genes for both O1 and non-O1 serogroups included. Gene sequences were individually aligned using Clustal Omega (version 1.2.4), prior to HMM construction with HMMER (version 3.2.1) and concatenation of the HMM alignments. Assemblies were screened against this database using Hamburger (version 836a77c) to identify the operon, and genetic structure was compared across the assemblies and references to designate serogroups.
DOI: 10.6084/m9.figshare.25598145.v1
title: Access to Basic services (ABS).csv

description: Access to Basic Services (ABS) or Access to Public Services (APS) is considered one dimension of attaining household resilience to food insecurity. For this, ABS is a latent variable computed from different directly observed variables. Hence, the data file entitled "ABS" includes directly observed types of public services accessed or utilized by respondents. As the service types are in different measures, the variables were transformed into standard measures using optimal scaling for ease of comparison.#You can get file names on the right side with zccc, zmmen, ...z...as the transformed form the data in the left side.
DOI: 10.6084/m9.figshare.27083161.v1
title: consensus sequences drafted from microbial communities that were characterized with ONT 16S rRNA gene sequencing

description: Consensus sequences generated by CONCOMPRA, NGSpeciesID, and amplicon_sorter from (1) a synthetic bacterial community composed of 20 equally abundant bacteria (16S MOCK; https://www.atcc.org/products/msa-1002) or (2) the ZymoGut Microbiome Standard, a microbial community mimicking the human gut microbiome (Gut Microbiome Standard; https://files.zymoresearch.com/datasheets/ds1712_zymobiomics_gut_microbiome_standard_data_sheet.pdf). The first was sequenced twice, on both a R9 and and R10 flow cell (indicated by the folder structure). For CONCOMPRA, all the consensus sequences ('CONCOMPRA.all_consensus') are given as well as the non chimeric sequences only ('CONCOMPRA.noglobal_nolocalchim.consensus.sequences'). The full-length of the 16S rRNA gene was amplified with the primer set 27F and 1492R.Sequencing details as well as the data processing steps are described in: Stock, Willem, et al. "Breaking free from references: a consensus-based approach for community profiling with long amplicon nanopore data." <i>bioRxiv</i> (2024): 2024-07. ( https://www.biorxiv.org/content/10.1101/2024.07.04.602031v1 )<br>
DOI: 10.3535/phf-ppe-ybz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12254030.v1
title: All entities analysis result_betweeness centrality

description: E-mental health entity analysis result of PMC data.
DOI: 10.6084/m9.figshare.22976285.v1
title: mag2d_chem

description: https://archive.materialscloud.org/record/2019.0020/v1
DOI: 10.6084/m9.figshare.786497.v1
title: Behavioural results (% accuracy) and average spine density for all mice

description: Column 1: Mouse ID<br>Column 2: Genotype (0=ephrin-A2-/-; 1=WT)<br>Column 3: Stimulation condition (1=sham; 2=rTMS)<br>Column 4: Gender (0=female; 1=male);<br>Column 5: Stripe orientation (0=horizontal; 1=vertical)<br>Column 6: Learning phase early (% accuracy)<br>Column 7: Learning phase mid (% accuracy)<br>Column 8: Learning phase late (% accuracy)<br>Column 9: Reverse learning phase early (% accuracy)<br>Column 10: Reverse learning phase mid (% accuracy)<br>Column 11: Reverse learning phase late (% accuracy)<br>Column 12: Dentate gyrus molecular layer, mean spine density per 10 micrometer<br>Column 13: CA1 pyramidal layer, mean spine density per 10 micrometer
DOI: 10.3535/hl8-rn4-mqb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xa6-qty-ylt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22003847.v1
title: CESM_1_2_data

description: Please see README in the file for more info. <br> This is the data repository for the manuscript: "Fast and Slow Responses of the Tropical Pacific to Radiative Forcing in Northern High Latitudes", submitted to AMS. <br> Data are designed to be read and plotted via MATLAB. The required data files (.mat) and code (.m) for each figure are located in the corresponding directories. Outputted figures are saved in 'svg' and 'png' directories.
DOI: 10.3535/7zp-z5h-pfj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h4l-snk-n58
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22272022.v1
title: Aligned Amino Acid Sequences for TLR4, 9 and 11

description: Amino acid sequences TLR4, 9, and 11 that were used for our project.
DOI: 10.3535/k4b-q8q-bpl
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q80-fnx-zlf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23825955.v3
title: Anonymized data for the INTELLiSTREAM

description: Baseline variables and outcomes (intellidata_dem_export)Arterial blood gas data (data_abg_intellistream)
DOI: 10.6084/m9.figshare.23899655.v1
title: Daridorexant as a novel pharmacotherapeutic approach in insomnia: a systematic review and meta-analysis

description: Insomnia is a multi-factorial disorder with conventional treatment options that are not satisfactory for many patients. This metaanalysis analyzed the safety and efficacy of daridorexant. An electronic database search for RCTs was conducted on Medline via PubMed, Cochrane, and Clinicaltrials.gov using the terms ‘Daridorexant,’ ‘RCT,’ ‘Insomnia’ trials evaluating the efficacy and/or safety of daridorexant for insomnia were included. The data were synthesized using Cochrane review manager version 5.4.1. Cochrane risk of bias 2.0 tool and GRADEpro-GDT were used to assess the methodological and evidence quality, respectively. Of 109 searched studies, four trials were included. The risk of treatment-emergent adverse events with 25 mg daridorexant [risk ratio (RR) = 1.12 (0.88, 1.43), <i>p</i> = 0.36; I<sup>2</sup> = 0%] and 50 mg daridorexant [RR = 1.25 (0.88, 1.79), <i>p</i> = 0.22; I<sup>2</sup> = 28%] and serious adverse events with 25 mg [RR = 0.86 (0.23, 3.19), <i>p</i> = 0.82, I<sup>2</sup> = 56%] and 50 mg [RR = 1.32 (0.29, 6.08), <i>p</i> = 0.72, I<sup>2</sup> = 52%] was comparable to placebo [Moderate quality evidence]. Risk of nasopharyngitis was also comparable to placebo. The efficacy parameters like wake after sleep onset, latency to persistent sleep, and subjective total sleep time showed significant improvement with daridorexant. The risk of bias is low for three studies and some concern for one. Daridorexant is a safer and efficacious agent for induction and maintenance of sleep for chronic insomnia. The registration number is CRD42022335233. www.clinicaltrials.gov identifiers are NCT03575104, NCT03545191, NCT03679884, and NCT02839200).
DOI: 10.6084/m9.figshare.6973841.v1
title: Merged fungal ITS reads

description: Reads clipped and paired-end reads merged with Clip&Merge<br>
DOI: 10.3535/29k-6wd-t1a
title: †Scenella Billings, 1872

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e2g-kca-pks
title: †Meristinae Hall & Clarke, 1893

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28604813.v1
title: Ground Truth for Validating Scene Descriptions

description: Ground truth annotations, which include entities, spatial relationships, temporal interactions (states, events), and contextual elements (weather, traffic) to validate AI-driven scene description generation
DOI: 10.6084/m9.figshare.28650476.v1
title: AI_Regression

description: This study used three representative machine learning regression algorithms to perform regression analysis of SSQ-TS scores, namely: K-Nearest Neighbors (KNN) regressor, Extreme Gradient Boosting (XGBoost) regressor, and Random Forest (RF) regressor. The prediction performance of each model is evaluated and compared through three commonly used evaluation indicators: coefficient of determination (R²), mean square error (MSE) and root mean square error (RMSE).
DOI: 10.3535/d5z-s73-nj0
title: Favositiid

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tw3-4yp-8yf
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7006220.v2
title: transcriptome data of Torreya grandis

description: transcriptome data of Torreya grandis generated by Illumina sequencing.
DOI: 10.6084/m9.figshare.7884539.v2
title: ArCo Ontology (ArCo network)

description: The ArCo module is the central node of the network ArCo - Architecture of Knowledge. It imports all the other modules and the ontologies directly reused, and models core information about cultural heritage.
DOI: 10.17632/gh8y7rbmy7
title: EXPERIMENTAL INVESTIGATION IN THE VARIATION OF SOAPSTONE AND GRANITE ROCKS AS THERMAL ENERGY STORAGE MATERIALS

description: To determine the suitability of granite and soapstone rocks as materials for thermal energy storage in solar drying and concentrated solar power generation experimental investigation was conducted. Characterization experiments on thermal chemical, thermophysical and mechanical properties were conducted. Whereby, thermal stability was determined using the thermal gravimetric analyzer (TGA); crystalline phases were studied using the X-ray diffraction (XRD); structural analysis was studied through the petrographic imaging. Moreover, chemical composition was determined using the X-ray fluorescence (XRF) and; high temperature test was done in the high temperature furnace. The thermo-physical properties included density and porosity studied using the displacement method; specific and thermal capacity experimented using the differential scanning calorimetry (DSC) and; thermal diffusivity and conductivities determined through the laser flash apparatus (LFA). The thermo-mechanical properties studied were the Young’s modulus obtained using the nano-indentation method. 

Sample codes depending on rock type and geotectonic setting of origin
- Soapstone from Craton geotectonic setting CS
- Soapstone from Usagaran geotectonic setting US
- Granite from Craton geotectonic setting CG
- Granite from Usagaran geotectonic setting UG
DOI: 10.3535/fv0-5yr-g87
title: Bioturbation trace fossils

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lry-bdp-gsj
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5d8-20w-q3f
title: Favosites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hh1-28h-04f
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24564772.v1
title: HZAU_Ebam_v1_gff3

description: The annotation data(gff3) of Elopichthys bambusa .
DOI: 10.17632/szx3kgpn3k
title: Perl scripts

description: The exact commands used for running the analyses of Perl scripts to filter raw data by removing Smart-seq2 public primer sequences, contaminated adapter reads, low-quality reads, and the reads with over 5% N bases.
DOI: 10.17632/ww6w2dnbr4
title: Dataset of analysis of search engine’s question answering system responses to queries concerning first aid in common adult health emergencies

description: This dataset contains results of evaluation of the Google search engine's question answering system advice on first aid generated in response to queries concerning provision of help in common adult health emergencies.

In December 2022-January 2023, an English-language search was carried out in Google with ten queries based on the following keyword combinations: (what to do OR how to help) AND (bleeding OR chest pain OR choking OR not breathing OR seizure).

The search engine’s question answering system responses (Featured snippets and People also ask items) were collected (up to 11 per search query). Unique eligible question answering system responses were evaluated for adherence to the International Federation of Red Cross First Aid Guidelines 2020 using the predeveloped checklists. Adherence to the guidelines was rated for each item of respective checklist as complete (checklist item wording satisfied in full), incomplete (checklist item wording satisfied in part) or absent (where the question answering system response omitted corresponding first aid instruction). 

Additionally, source webpages of eligible question answering system responses were categorised as Academic, Charity/Non-profit entity, Commercial, Government or Media outlet, and content of the source webpages was evaluated for quality of first aid instructions using the same checklists with a focus on source article text.
DOI: 10.3535/abc-gsk-rg2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t7s-s4x-blm
title: †Scenella Billings, 1872

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yfh-jkx-ddk
title: Trypanites sozialis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22310170.v1
title: Captus plastome alignments

description: Plastome alignments created by Captus pipeline.
DOI: 10.6084/m9.figshare.26021062.v2
title: <b>Reconciling inconsistent trends of geochemical and environmental magnetic records from East Asian sediments based on modern calibration</b>

description: Elevation, element data, annual mean precipitation (AMP), annual mean temperature (AMT), and sunny/shady slope data of the surface soil sampling sites.
DOI: 10.6084/m9.figshare.26283172.v1
title: Dataset and R code for the paper named "Soil respiration response to decade-long warming modulated by soil moisture in a boreal forest" in Nature Geoscience

description: Data and R code for soil respiration under experimental warming in boreal forests from the project named "The Boreal Forest Warming at an Ecotone in Danger (B4WarmED)".
DOI: 10.3535/669-bfr-cel
title: †Nematopora Ulrich, 1888

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jbj-k4m-8gr
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25370944.v3
title: <b>Structural determinants of co-translational protein complex assembly</b>

description: <b>Data S1</b>. Structure Dataset for Homo sapiens<b>Data S2</b>. Structure Dataset for <i>Escherichia coli</i><b>Data S3</b>. Structure Dataset for <i>Saccharomyces cerevisiae</i><b>Data S4</b>. Human co-complex subunit pairs<b>Data S5</b>. OMICs data matrices matrix for human (includes the matrices for: Delta-Melting-Temperature, Melting-Curve-Dissimilarity, Protein-Abundance-correlation, Delta-Protein-Degradation-Rate, Delta-Transcription-Rate, Gene-Expression-correlation, Delta-Translation-Initiation-Efficiency, Delta-Translation-Elongation-Speed)
DOI: 10.3535/gy9-8cc-aal
title: Cruciana

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gz5-xsy-1ra
title: Saffordophyllum grande (Sokolov, 1951)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1391910.v1
title: Parameter Estimation of Linear Sensorimotor Synchronization Models: Phase Correction, Period Correction, and Ensemble Synchronization

description: Linear models have been used in several contexts to study the mechanisms that underpin sensorimotor synchronization. Given that their parameters are often linked to psychological processes such as phase correction and period correction, the fit of the parameters to experimental data is an important practical question. We present a unified method for parameter estimation of linear sensorimotor synchronization models that extends available techniques and enhances their usability. This method enables reliable and efficient analysis of experimental data for single subject and multi-person synchronization. In a previous paper (Jacoby et al., 2015), we showed how to significantly reduce the estimation error and eliminate the bias of parameter estimation methods by adding a simple and empirically justified constraint on the parameter space. By applying this constraint in conjunction with the tools of matrix algebra, we here develop a novel method for estimating the parameters of most linear models described in the literature. Through extensive simulations, we demonstrate that our method reliably and efficiently recovers the parameters of two influential linear models: Vorberg and Wing (1996), and Schulze et al. (2005), together with their multi-person generalization to ensemble synchronization. We discuss how our method can be applied to include the study of individual differences in sensorimotor synchronization ability, for example, in clinical populations and ensemble musicians. <strong>Implementation of the bGLS Method</strong><br>For more information see in <em>Timing & Time Perception</em>, Special issue on Rhythm Production and Perception (RPPW):<br>Jacoby, N., Tishby, N., Repp, B. H., Ahissar, M., & Keller, P. E. (2015). Parameter estimation of linear<br>sensorimotor synchronization models: Phase correction, period correction and ensemble synchronization. <em>Timing Time Percept.</em>, 3, 52-87.<br>and<br>Jacoby, N., Keller, P. E., Repp, B. H., Ahissar, M., & Tishby, N. (2015). Lower bound on the accuracy<br>of parameter estimation methods for linear sensorimotor synchronization models. <em>Timing Time</em><br><em>Percept.</em>, 3, 32-51. <br>Nori.viola@gmail.com<br>Please cite this paper if you are using this package:<br>Nori Jacoby, Naftali Tishby, Bruno H. Repp, Merav Ahissar and Peter E. Keller (2015) <br>IMPORTANT: This code is currently (12/14) in beta.<br>Critical updates will be forthcoming. <br>ALL CODE BY: Nori Jacoby (nori.viola@gmail.com)
DOI: 10.6084/m9.figshare.14530005.v1
title: absence of a bilingual advantage in cognitive flexibilty

description: No difference between bilinguals and monolinguals was found in cognitive flexibility using DCCS.
DOI: 10.6084/m9.figshare.17151902.v1
title: Edge effects on the soil seed bank of temperate European forests

description: Data on soil seed bank and herb layer diversity and composition at the forest edge vs interior along latitudinal, elevational and forest management gradients and in relation to edaphic, climatic and landscape conditions in temperate European forests.<br>
DOI: 10.3535/6f1-zw2-557
title: Asterolepis Razowski, 1964

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14707194.v1
title: cydrasil-v3-ssu-align.bacteria.mask

description: This is the alignment mask file generated from SSU-Align 0.1.1 when the Cydrasil 3.0 alignments were masked using per-alignment generated masks. This file can be used when aligning query sequences to the SSU-Align 0.1.1 16S rRNA gene model to having identical masks to the Cydrasil 3.0 reference alignment.
DOI: 10.6084/m9.figshare.26983174.v1
title: Emission intensity

description: Inventory of methane and nitrous oxide emissions from freshwater aquaculture in China
DOI: 10.3535/72l-rd5-d8h
title: †Volborthella tenuis Schmidt, 1888

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/tx4-9k8-tht
title: Tremataspis schmidti Rohon

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6sdhr5y5cy
title: Programs for the coupling of spherical harmonics

description: Title of program: YLM-COUPLING Catalogue Id: AARL_v1_0 Nature of problem The subroutines GAUNT and RECYLM allow the linearization of the product of two spherical harmonics. The summation limits are determined by certain selection rules for the GAUNT coefficients. Versions of this program held in the CPC repository in Mendeley Data AARL_v1_0; YLM-COUPLING; 10.1016/0010-4655(82)90031-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.3535/2fr-mf4-bhm
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xek-m0s-9hy
title: Streptelasma corniculum Hall

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xyzt9gjzhj
title: In-situ reduction of Fe(Ⅲ) (hydr)oxides-adsorbed As(Ⅴ) via electron shuttling in the presence of organic matter

description: OM can promote microbial As(V) reduction in high As groundwater systems. As a result, we explored how As(V) adsorbed on FeOOH minerals could be in-situ reduced via electron shuttling between AsRB and different OM. Our findings showed that AQDS was more effective than other two natural organic matter (NOM, i.e., SRHA and SRFA) in reducing both As(V) and Fe(III), due to its high content of quinone moieties. The results of kinetic analysis demonstrated in-situ reduction of As(V), and As(V) bound to ferrihydrite was more readily reduced than As(V) bound to goethite. In addition, the transcriptional activities of three As metabolic genes initially increased but later declined due to high As concentrations, which further slowed the As(V) reduction process. Therefore, we studied As and Fe species at four locations in our designed anaerobic agar electron shuttle device, and changes in relative expression levels of three As metabolic genes (arsC, arrA and arsB).
DOI: 10.3535/546-jfk-0qq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.