cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id400247.1
title: StrainInfo SI-ID 400247.1

description: StrainInfo dataset 400247 about a strain of Pseudomonas aeruginosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400071.1
title: StrainInfo SI-ID 400071.1

description: StrainInfo dataset 400071 about a strain of Chitinophaga. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400072.1
title: StrainInfo SI-ID 400072.1

description: StrainInfo dataset 400072 about a strain of Agromyces archimandritae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400073.1
title: StrainInfo SI-ID 400073.1

description: StrainInfo dataset 400073 about a strain of Stenotrophomonas bentonitica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400074.1
title: StrainInfo SI-ID 400074.1

description: StrainInfo dataset 400074 about a strain of Litoreibacter arenae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.4fm1yr
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tangara fastuosa (R.Lesson, 1831)"
 ]
}

 The dataset includes 201 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000264-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id400169.1
title: StrainInfo SI-ID 400169.1

description: StrainInfo dataset 400169 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400170.1
title: StrainInfo SI-ID 400170.1

description: StrainInfo dataset 400170 about a strain of Glycomyces fuscus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.tc05tu
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caiophora contorta (Desr.) Urb. & Gilg"
 ]
}

 The dataset includes 44 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002017-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id400171.1
title: StrainInfo SI-ID 400171.1

description: StrainInfo dataset 400171 about a strain of Streptococcus zalophi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400172.1
title: StrainInfo SI-ID 400172.1

description: StrainInfo dataset 400172 about a strain of Vibrio sinaloensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400248.1
title: StrainInfo SI-ID 400248.1

description: StrainInfo dataset 400248 about a strain of Piskurozyma fildesensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400249.1
title: StrainInfo SI-ID 400249.1

description: StrainInfo dataset 400249 about a strain of Halomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400250.1
title: StrainInfo SI-ID 400250.1

description: StrainInfo dataset 400250 about a strain of Blautia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400251.1
title: StrainInfo SI-ID 400251.1

description: StrainInfo dataset 400251 about a strain of Actinoplanes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id400075.1
title: StrainInfo SI-ID 400075.1

description: StrainInfo dataset 400075 about a strain of Psychrobacter sanguinis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.r4ez5z
title: Occurrence Download

description: A dataset containing 6218 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippoglossus hippoglossus (Linnaeus, 1758)"
 ]
}

 The dataset includes 6218 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003282-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13578373
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.f83ukv
title: Occurrence Download

description: A dataset containing 767425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is April",
 "TaxonKey is Cygnus olor"
 ]
}

 The dataset includes 767425 records from 894 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010798-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vcajng
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clarias leiacanthus",
 "Country is Singapore",
 "OccurrenceStatus is Present",
 "EventDate is 1800,2026"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010809-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17501961
title: Dissolved oxygen concentration of urban lakes in Berlin

description: This dataset contains oxygen and water temperature time series data of 6 different small urban lakes in Berlin. 3 of the lakes were measured in summer 2024 (Ruhwaldteich, Sausuhlensee, Lietzensee) and 3 in summer 2025 (Breitkopfbecken, Karpfenteich, Wilhelmsruher See) as part of the Horizon Europe Project All Data 4 Green Deal (AD4GD) by Kompetenzzentrum Wasser Berlin. The sensors were installed in the center of the lake ca. 20 cm below the water surface. The raw data is provided in ";"-seperated csv files. For each lake the files contain the following columns:



datetime: The timesamp „YYYY-mm-dd hh:mm“ in Central European Summer Time (CEST)

o2_con: Dissolved oxygen concentration in mg/L

o2_sat: Oxygen saturation in %  

wtemp: Water temperature in °C


In some time series there might be gaps due to data transfer issues. The data was collected with different sensors, different temporal resolution  and in different time periods.




Lake
Latitude (EPSG:4326)
Longitude(EPSG:4326)
Time period
Temporal resolution
Sensor type


Breitkopfbecken
52.572875
13.362678
2025-04-15 to 2025-10-22
15 min
AQUATOS web LTX


Wilhelmsruher See
52.584285
13.370100
2025-06-20 to 2025-10-22
30 min
In-Situ RDO Blue


Karpfenteich
52.484261
13.471845
2025-05-28 to 2025-07-20
15 min
In-Situ RDO PRO-X


Ruhwaldteich
52.525753
13.260015
2024-04-29 to 2024-11-11
15 min
AQUATOS web LTX


Lietzensee
52.508569
13.291415
2024-06-19 to 2024-09-30
15 min
In-Situ RDO Blue


Sausuhlensee
52.513775
13.250034
2024-05-25 to 2024-09-30
30 min
In-Situ RDO PRO-X
DOI: 10.5281/zenodo.17501962
title: Dissolved oxygen concentration of urban lakes in Berlin

description: This dataset contains oxygen and water temperature time series data of 6 different small urban lakes in Berlin. 3 of the lakes were measured in summer 2024 (Ruhwaldteich, Sausuhlensee, Lietzensee) and 3 in summer 2025 (Breitkopfbecken, Karpfenteich, Wilhelmsruher See) as part of the Horizon Europe Project All Data 4 Green Deal (AD4GD) by Kompetenzzentrum Wasser Berlin. The sensors were installed in the center of the lake ca. 20 cm below the water surface. The raw data is provided in ";"-seperated csv files. For each lake the files contain the following columns:



datetime: The timesamp „YYYY-mm-dd hh:mm“ in Central European Summer Time (CEST)

o2_con: Dissolved oxygen concentration in mg/L

o2_sat: Oxygen saturation in %  

wtemp: Water temperature in °C


In some time series there might be gaps due to data transfer issues. The data was collected with different sensors, different temporal resolution  and in different time periods.




Lake
Latitude (EPSG:4326)
Longitude(EPSG:4326)
Time period
Temporal resolution
Sensor type


Breitkopfbecken
52.572875
13.362678
2025-04-15 to 2025-10-22
15 min
AQUATOS web LTX


Wilhelmsruher See
52.584285
13.370100
2025-06-20 to 2025-10-22
30 min
In-Situ RDO Blue


Karpfenteich
52.484261
13.471845
2025-05-28 to 2025-07-20
15 min
In-Situ RDO PRO-X


Ruhwaldteich
52.525753
13.260015
2024-04-29 to 2024-11-11
15 min
AQUATOS web LTX


Lietzensee
52.508569
13.291415
2024-06-19 to 2024-09-30
15 min
In-Situ RDO Blue


Sausuhlensee
52.513775
13.250034
2024-05-25 to 2024-09-30
30 min
In-Situ RDO PRO-X
DOI: 10.15468/dl.2a8cwx
title: Occurrence Download

description: A dataset containing 555658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "TaxonKey is Alopochen aegyptiaca"
 ]
}

 The dataset includes 555658 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010803-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmbf75
title: Occurrence Download

description: A dataset listing the 637 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Insecta [GBIF Backbone Taxonomy])",
 "GadmGid is one of (COL.19.1_2)",
 {
 "and" : [
 "Elevation is less than or equal to 500m"
 ]
 }
 ]
 }
 ]
}

 The dataset's 637 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010807-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17493900
title: Response Adaptive Clinical Trials

description: In this GitHub repository, we provide a collection of response-adaptive trials. Our goal is to continuously update and expand this collection. We encourage contributions from the community.
DOI: 10.5281/zenodo.8208502
title: MDSINE2 Dataset Inference Analysis

description: MDSINE2 Inference Analysis files. This archive contains the output from the inference stage of the dataset (MCMC samples) using ten different seeds. Each ZIP archive has been split due to technical limitations while uploading large files through Zenodo's web API.

For the full project/source pipeline, refer to https://github.com/gerberlab/MDSINE2_Paper.

1) To download the files, we recommend either our in-house tool (https://github.com/gibsonlab/zenodo_download) or Zenodo's endorsed tool (https://github.com/dvolgyes/zenodo_get).

2) The multi-part ZIP files were created using 7-zip. To unzip it, you should use the "7z x" command. For example, to unpack seed 10 from the command line:

7z x healthy-seed10.zip

3) In the MDSINE2 installation, we provide a command-line interface "mdsine2 extract-posterior" for extracting the MCMC samples from the output of the unpacked ZIP archives (python pickle files). For instance, `mdsine2 extract-posterior -i healthy-seed10/mcmc.pkl -i healthy-seed11/mcmc.pkl ...`

--------

Related zenodo records:

https://doi.org/10.5281/zenodo.16915311 -- MDSINE2 Semisynthetic Dataset

https://doi.org/10.5281/zenodo.16905647 -- MDSINE2 Cross-Validation run (Healthy cohort)

https://doi.org/10.5281/zenodo.16915340 -- MDSINE2 Cross-Validation run (Dysbiotic cohort)
DOI: 10.5281/zenodo.8208503
title: MDSINE2 Dataset Inference Analysis

description: MDSINE2 Inference Analysis files. This archive contains the output from the inference stage of the dataset (MCMC samples) using ten different seeds. Each ZIP archive has been split due to technical limitations while uploading large files through Zenodo's web API.

For the full project/source pipeline, refer to https://github.com/gerberlab/MDSINE2_Paper.

1) To download the files, we recommend either our in-house tool (https://github.com/gibsonlab/zenodo_download) or Zenodo's endorsed tool (https://github.com/dvolgyes/zenodo_get).

2) The multi-part ZIP files were created using 7-zip. To unzip it, you should use the "7z x" command. For example, to unpack seed 10 from the command line:

7z x healthy-seed10.zip

3) In the MDSINE2 installation, we provide a command-line interface "mdsine2 extract-posterior" for extracting the MCMC samples from the output of the unpacked ZIP archives (python pickle files). For instance, `mdsine2 extract-posterior -i healthy-seed10/mcmc.pkl -i healthy-seed11/mcmc.pkl ...`

--------

Related zenodo records:

https://doi.org/10.5281/zenodo.16915311 -- MDSINE2 Semisynthetic Dataset

https://doi.org/10.5281/zenodo.16905647 -- MDSINE2 Cross-Validation run (Healthy cohort)

https://doi.org/10.5281/zenodo.16915340 -- MDSINE2 Cross-Validation run (Dysbiotic cohort)
DOI: 10.15468/dl.xz27dh
title: Occurrence Download

description: A dataset containing 340872 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((2.69368 51.49185,3.34361 51.37609,3.34361 51.26003,3.86974 51.19542,4.59189 51.41471,5.34498 51.25357,5.81954 51.15015,5.63384 50.76676,6.02586 50.74718,6.06713 50.9231,5.9227 51.05298,6.23219 51.15662,6.06713 51.22774,6.26314 51.45972,6.02586 51.74167,6.17029 51.85013,6.76864 51.90109,7.07256 52.27107,7.04209 52.46331,6.7171 52.48805,6.77804 52.63622,7.08271 52.63622,7.22489 53.23606,6.84913 53.47247,6.99191 54.23491,2.77327 54.14543,2.69368 51.49185))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Rhodophyta, Phaeophyceae, Xanthophyta, Chlorophyta)"
 ]
}

 The dataset includes 340872 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010808-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28879733.v3
title: 3D-GloBFP: the first global three-dimensional building footprint dataset (PART Ⅰ, grid ID: 0-400)

description: The 3D Global Building Footprints (3D-GloBFP) dataset is the first global-scale building height dataset at the individual building footprint level for the year 2020, generated through the integration of multisource Earth Observation (EO) data and the extreme gradient boosting (XGBoost) model. The reliability and accuracy of 3D-GloBFP have been validated across 33 subregions, achieving R² values ranging from 0.66 to 0.96 and root-mean-square errors (RMSEs) between 1.9 m and 14.6 m. The dataset is divided into spatial grid-based tiles, each stored as an individual ShapeFile (.shp) containing estimated building heights (in meters) in attribute tables. See world_grid.shp and readme.txt at https://doi.org/10.5281/zenodo.11319912 for grid partitioning and naming details.
DOI: 10.15468/dl.ztupex
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clarias meladerma",
 "Country is Singapore",
 "OccurrenceStatus is Present",
 "EventDate is 1800,2026"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010813-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30508388
title: Supplementary Material for: Dermatofibrosarcoma Protuberans of the Breast: A Rare Case Report

description: Introduction: Dermatofibrosarcoma protuberans (DFSP) is a rare soft tissue sarcoma that grows from the dermis and is most commonly found in the trunk and proximal extremities. It is characterized by frequent local recurrences and invasive growth. Despite its rarity, DFSP can occur in the breast. In this report, we describe the successful treatment of a rare case of DFSP of the breast that resulted in long-term disease-free survival.
Case presentation: A 43-year-old Syrian woman diagnosed with a right breast mass and underwent a lumpectomy, which revealed DFSP. Subsequent imaging studies and biopsies excluded metastatic disease. Over the following years, the patient developed several benign breast, axillary, uterine, and flank lesions. At 6-year follow-up, she had no signs of local recurrence or metastasis.
Conclusion: This case report highlights the importance of early diagnosis and appropriate management of DFSP, even in unusual locations such as the breast. 6 years follow-up remains essential to monitor for any recurrences.
DOI: 10.6084/m9.figshare.30508388.v1
title: Supplementary Material for: Dermatofibrosarcoma Protuberans of the Breast: A Rare Case Report

description: Introduction: Dermatofibrosarcoma protuberans (DFSP) is a rare soft tissue sarcoma that grows from the dermis and is most commonly found in the trunk and proximal extremities. It is characterized by frequent local recurrences and invasive growth. Despite its rarity, DFSP can occur in the breast. In this report, we describe the successful treatment of a rare case of DFSP of the breast that resulted in long-term disease-free survival.
Case presentation: A 43-year-old Syrian woman diagnosed with a right breast mass and underwent a lumpectomy, which revealed DFSP. Subsequent imaging studies and biopsies excluded metastatic disease. Over the following years, the patient developed several benign breast, axillary, uterine, and flank lesions. At 6-year follow-up, she had no signs of local recurrence or metastasis.
Conclusion: This case report highlights the importance of early diagnosis and appropriate management of DFSP, even in unusual locations such as the breast. 6 years follow-up remains essential to monitor for any recurrences.
DOI: 10.15468/dl.gcgdgj
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphisbaena occidentalis"
 ]
}

 The dataset includes 54 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010818-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17502140
title: The Consciousness State Factor: A Phenomenological Model for the Subjective Relativity of Time
DOI: 10.5281/zenodo.17502141
title: The Consciousness State Factor: A Phenomenological Model for the Subjective Relativity of Time
DOI: 10.15468/dl.s9g6xx
title: Occurrence Download

description: A dataset containing 1514 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Formicoxenus nitidulus"
 ]
}

 The dataset includes 1514 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010819-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zg3ch
title: Occurrence Download

description: A dataset containing 69925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "TaxonKey is Dothideomycetes"
 ]
}

 The dataset includes 69925 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010804-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ud9k2g
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clarias nieuhofii",
 "Country is Singapore",
 "OccurrenceStatus is Present",
 "EventDate is 1800,2026"
 ]
}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010820-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.448gd3
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthoscurria suina"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010821-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.