cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/yscvt9yw85.1
title: Iron Oxide-based SERS Bioprobe for Detecting Tumor Cells in Serous Effusion

description: We developed an iron oxide-based surface-enhanced Raman spectroscopy (SERS) bioprobe for detecting tumor cells in serous effusions. First, we characterized the bioprobe. Second, we validated its targeting ability and specificity. We first incubated the bioprobe with its target tumor cells for varying durations to determine the optimal incubation time. Then, we incubated it with different tumor cells to observe its specific targeting capability. Next, we evaluated its performance in detecting lung cancer cells in simulated pleural effusion and ovarian cancer cells in ascites. We incubated the IGR bioprobe with pleural effusion containing lung cancer cells and with pleural effusion without lung cancer cells, respectively; additionally, we incubated the IGR bioprobe (without antibodies) with pleural effusion containing lung cancer cells. We then compared the SERS signals among the three groups. We prepared simulated samples with tumor cells at varying concentrations and measured their average Raman signals. Subsequently, we established a classification model to differentiate tumor cells based on their concentrations. Finally, we validated the model using 105 clinical samples and employed machine learning to enhance the accuracy of the SERS bioprobe in classifying tumor cells according to their concentration.
DOI: 10.15468/dl.6ezddg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus patula",
 "Country is Rwanda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047153-250811113504898/datasets/export for details.
DOI: 10.22002/j26ev-j9090
title: 7.5% PEG CF411V

description: 7.5% PEG CF411V
description: <strong>Tilt Series Date:</strong> 2014-09-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli in vitro</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -5.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lynmarie Thompson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-09-30-4/rawdata/</p>PEGA411V0015_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-09-30-4/rawdata/PEGA411V0015_mcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        PEGA411V0015_mcorr_full.rec,  Reconstruction (Pixel Size 1.28 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-09-30-4/3dimage_46834/PEGA411V0015_mcorr_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8vzyv-xgp59
title: NLBi Fixed 293T

description: NLBi, wild type, WT, fixed, 1% formaldehyde, 293T
description: <strong>Tilt Series Date:</strong> 2014-03-08</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Fixed w/ 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-08-11/rawdata/</p>L012_2_NLBifixed_293t0009.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-08-11/rawdata/L012_2_NLBifixed_293t0009.mrc"
        > <i class="download icon"></i> Download </a></p>

        L012_2_NLBifixed_293t0009_part121_4.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-03-08-11/3dimage_39833/L012_2_NLBifixed_293t0009_part121_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zkdak-tv344
title: B. subtilis minicell lysate

description: B subtilis strain DK 720 minicell lysate
description: <strong>Tilt Series Date:</strong> 2013-09-05</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dan Kearns</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Minicell isolation and Lysozyme lysis</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-1/rawdata/</p>Bacilluslysemini0001.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-1/rawdata/Bacilluslysemini0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bacilluslysemini0001_part121_33.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-1/3dimage_30401/Bacilluslysemini0001_part121_33.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hppf8-79k18
title: NLRP3

description: Lysate from macrophages expressing ASC / Caspase-1-CARD / NLRP3-PYD-NBD
description: <strong>Tilt Series Date:</strong> 2014-03-17</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Macrophage lysate</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Hao Wu</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-17-12/rawdata/</p>NLRP3_34k0012.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-17-12/rawdata/NLRP3_34k0012.mrc"
        > <i class="download icon"></i> Download </a></p>

        NLRP3_34k0012_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-03-17-12/3dimage_40191/NLRP3_34k0012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/a3m7h-k4g55
title: dK 203 0.5h induced

description: dK203 is the dQ167 strain in which dK has also been deactivated. The strain is only inducible for dQ
description: <strong>Tilt Series Date:</strong> 2014-12-25</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum </p>
<strong>Strain:</strong> deltaQ 167</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Arash Komeili</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-25-1/rawdata/</p>dKhalfhinduced_atlas70001.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-25-1/rawdata/dKhalfhinduced_atlas70001.mrc"
        > <i class="download icon"></i> Download </a></p>

        dKhalfhinduced_atlas70001_full.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-25-1/3dimage_49918/dKhalfhinduced_atlas70001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/trcn8-cj466
title: Agrobacterium tumefaciens

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2013-08-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 300uM AS inductant</p>
<strong>Sample Preparation:</strong> Janelia</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-01-38/rawdata/</p>c58_Au_300mM0019.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-01-38/rawdata/c58_Au_300mM0019.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_Au_300mM0019_full.rec,  Reconstruction (Pixel Size 2.24 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-01-38/3dimage_29496/c58_Au_300mM0019_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/v92bx-kxz82
title: arpc3(-/-)

description: Raw data files of arpc3(-/-)
description: <strong>Tilt Series Date:</strong> 2013-08-23</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -14.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dorit Hanein, Sanford Burnham Medical Research Inst. provided plunge-freeze sample grids</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-28/rawdata/</p>atlas3n0006.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-28/rawdata/atlas3n0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas3n0006_full.rec,  Reconstruction (Pixel Size 2.4 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-28/3dimage_30073/atlas3n0006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.e6ztnq
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (90fd6680-349f-11d8-aa2d-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862, 33d232b5-5cc2-4521-8bd6-121c5bb41c32, ae447c50-b8a8-11d8-92a4-b8a03c50a862, 8e1a97a0-3ca8-11d9-8439-b8a03c50a862, cccff716-2694-4209-9f9e-2f7a484465a0, 7b8aff00-a9f8-11d8-944b-b8a03c50a862, d6bd7c74-ff29-48f8-b5f5-e9dc1afff3db, 9661d20d-86b6-4485-8948-f3c86b022fa7)",
 "TaxonKey is Piper umbellatum"
 ]
}

 The dataset includes 121 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047155-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/v6ban-7pr37
title: V. harveyi LuxQ OE

description: Vibrio harveyi strain BB120 + pFED368 (LuxQ overexpression)
description: <strong>Tilt Series Date:</strong> 2014-04-11</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio harveyi</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Nicola Lorenz</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-30/rawdata/</p>VibrioharveyiOEApril0032.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-30/rawdata/VibrioharveyiOEApril0032.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibrioharveyiOEApril0032_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-30/3dimage_41357/VibrioharveyiOEApril0032_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.k8nvud
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus patula",
 "Country is Tanzania, United Republic of",
 "HasCoordinate is true"
 ]
}

 The dataset includes 120 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047156-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qeuavr
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus patula",
 "Country is Uganda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047157-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5fghf-90636
title: Brucella WT

description: Brucella abortus WT
description: <strong>Tilt Series Date:</strong> 2014-04-10</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Brucella abortus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sean Crosson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-10-1/rawdata/</p>BrucellaWT0023.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-10-1/rawdata/BrucellaWT0023.mrc"
        > <i class="download icon"></i> Download </a></p>

        BrucellaWT0023_part121_7.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-10-1/3dimage_41229/BrucellaWT0023_part121_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/bss9gy3hwg
title: Risk Factors for Acne Relapse and Isotretinoin Retreatment after Initial Treatment of Acne Vulgaris with High-dose Isotretinoin: A Retrospective Cohort Study Supplementary Material

description: Risk Factors for Acne Relapse and Isotretinoin Retreatment after Initial Treatment of Acne Vulgaris with High-dose Isotretinoin: A Retrospective Cohort Study Baseline Characteristics and Study Design
DOI: 10.17632/bss9gy3hwg.1
title: Risk Factors for Acne Relapse and Isotretinoin Retreatment after Initial Treatment of Acne Vulgaris with High-dose Isotretinoin: A Retrospective Cohort Study Supplementary Material

description: Risk Factors for Acne Relapse and Isotretinoin Retreatment after Initial Treatment of Acne Vulgaris with High-dose Isotretinoin: A Retrospective Cohort Study Baseline Characteristics and Study Design
DOI: 10.22002/5hy2p-ng115
title: LD 4Q

description: low density TarCF-4Q on vesicles
description: <strong>Tilt Series Date:</strong> 2014-02-20</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli in vitro</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lynmarie Thompson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-20-20/rawdata/</p>LD4Qmanualblot0020.mrc,  Tilt Series (Pixel Size 0.35 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-20-20/rawdata/LD4Qmanualblot0020.mrc"
        > <i class="download icon"></i> Download </a></p>

        LD4Qmanualblot0020_full.rec,  Reconstruction (Pixel Size 1.4 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-02-20-20/3dimage_39190/LD4Qmanualblot0020_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k9txn-qth52
title: P41 + P41/P24 cat

description: Raw data files of P41 + P41/P24 cat
description: <strong>Tilt Series Date:</strong> 2014-01-09</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  scy2014-01-09-6_slicer18069.jpg: terminal organelle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-01-09-6/rawdata/</p>atlas20006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-01-09-6/rawdata/atlas20006.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20006_part131_7.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2014-01-09-6/3dimage_37588/atlas20006_part131_7.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dk5b3-pc617
title: R. sphaeroides Cryosections

description: Strain JPA 543 cryosections
description: <strong>Tilt Series Date:</strong> 2013-07-26</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Mark Ladinsky, Judy Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-25/rawdata/</p>rhodobactertestb0050.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
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        rhodobactertestb0050_full.rec,  Reconstruction (Pixel Size 0.52 nm), 2.8 GB  
        
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DOI: 10.17632/nwx7xgfnxp
title: Sequences of Mycobacterium avium subsp. paratuberculosis isolated from patients in in the Sudan

description: This dataset contains raw data of DNA sequence of Mycobacterium avium subsp. paratuberculosis (MAP) isolates recovered from human patients in Sudan presenting with gastrointestinal complaints. It includes MAP sequences of human samples (from tissue samples and stool samples) and MAP sequences of animal samples. DNA was extracted from MAP cultures, and a fragment of the IS1311 gene was amplified using nested PCR, followed by sequencing.