cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cch3gr
title: Occurrence Download

description: A dataset listing the 6 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix flabellaris Andersson"
 ]
}

 The dataset's 6 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030615-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26275/qgwu-jqws
title: Antibodies tested in the colon – Human

description: Antibodies tested in the colon
description: List of antibodies that were tested in the human colon.
DOI: 10.26275/puzi-xtm3
title: Antibodies tested in the colon – Human

description: Antibodies tested in the colon
description: List of antibodies that were tested in the human colon.
DOI: 10.26275/h4yk-volr
title: Calcium imaging and tension recording in response to stimulation of the vagus nerve (VNS)

description: Comprehensive Structural and Functional Mapping of Mammalian Colonic Nervous System
description: Effect of electrical stimulation of the vagus nerve on colonic contractions and colonic neuron/ICC calcium activity, in ex vivo preparations lacking the targets of vagal afferent input.
DOI: 10.26275/rake-ohti
title: Scaffold map - Mapping of human gastric enteroendocrine cells

description: Distributions of enteroendocrine cells (EEC), defined by the hormones they contain within the human fundus and corpus are mapped onto the human stomach scaffold.
DOI: 10.26275/yhbc-bq0c
title: Scaffold map - Mapping of human gastric enteroendocrine cells

description: Distributions of enteroendocrine cells (EEC), defined by the hormones they contain within the human fundus and corpus are mapped onto the human stomach scaffold.
DOI: 10.26275/3vqo-xux0
title: Scaffold map - Mapping of human gastric enteroendocrine cells

description: Distributions of enteroendocrine cells (EEC), defined by the hormones they contain within the human fundus and corpus are mapped onto the human stomach scaffold.
DOI: 10.26275/f4p0-d1ic
title: Mouse genetic models to manipulate enterochromaffin cell activity

description: Mouse genetic models to manipulate enterochromaffin cell activity
description: Immunohistochemical validation of mouse genetic strategies used to specifically activate and silence enterochromaffin cells in the intestine
DOI: 10.15468/dl.9bn3a3
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "StateProvince is Sinaloa",
 "TaxonKey is Avicennia germinans (L.) L."
 ]
}

 The dataset includes 182 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030625-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26275/x1ht-tsiz
title: Innervation of enteroendocrine cells in the gastric mucosa in human and pig - including a description of the innervation of mucosal vasculature

description: Detailed analysis of the intrinsic and extrinsic nerves innervating the pig stomach
description: Immunohistochemical analysis of the relationship between enteroendocrine cells and nerve endings in the gastric mucosa of human and pig. The innervation of mucosal vasculature is also revealed and current knowledge of the gastric innervation summarized.
DOI: 10.26275/lck3-f9v0
title: Mapping of the vagal afferent innervation of the mouse lung

description: Functional mapping of peripheral and central circuits for airway protection and breathing
description: Mapping of the vagal afferent innervation of the mouse lung using a combination of viral and genetic approaches to label unique vagal sensory subsets innervating the lung
DOI: 10.26275/tpu4-kvzo
title: Spatial distribution and morphometric characterization of mucosal afferents of the pylorus of the rat stomach

description: Mapping Stomach Autonomic Circuitry and Function for Neuromodulation of Gastric Disorders
description: Spatial distribution and morphometric characterization of mucosal afferents associated with the pylorus, antrum and corpus of the rat stomach
DOI: 10.26275/d3jb-pkzx
title: Sympathetic and parasympathetic effects on action potentials in isolated pig ventricular myocytes

description: Current clamp recordings of action potential responses to norepinephrine, neuropeptide Y, acetylcholine, and vasoactive intestinal peptide.
DOI: 10.25345/c5pn8xs75
title: MassIVE MSV000095955 - Ultra-Fast Multi-Organ Proteomics Unveils Tissue-Specific Mechanisms of Drug Efficacy and Toxicity
title: SI tables for the manuscript of ultra-fast tissue proteomics
DOI: 10.26275/dfk5-6w3z
title: Selective stimulation of the ferret abdominal vagus nerve with multi‐contact nerve cuff electrodes

description: GI vagal pathways for emesis and feeding
description: This dataset contains the effects of abdominal vagus nerve stimulation on nodose ganglion cell activity recorded from multi-electrode arrays and gastrointestinal myoelectric responses recorded with serosal surface electrodes in the ferret.
DOI: 10.26275/kgkj-6vb9
title: Calcium imaging of mouse dorsal root ganglion (DRG) neurons in response to chemical stimuli of distal colon and rectum (colorectum)

description: GCaMP recordings from thoracolumbar (T12 to L2) and lumbosacral (L5 to S1) DRG in responses to two chemical stimuli to the attached colorectum, i.e., acidic hypertonic solution (AHS) and inflammatory soup (IS).
DOI: 10.15468/dl.zzs8u7
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myiarchus tuberculifer (Orbigny & Lafresnaye, 1837)"
 ]
}

 The dataset includes 204 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030627-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26275/ggj4-agvt
title: Myenteric neuron activity during spontaneous motor complexes in mouse colon

description: This dataset includes GCaMP calcium imaging of myenteric neurons in the mouse proximal colon during spontaneous colon motor complexes (CMCs). Data were used in Nestor-Kalinoski et al, 2022: https://doi.org/10.1016/j.jcmgh.2021.08.016
DOI: 10.26275/z1wa-spub
title: Regional analysis of autonomic nerves in normal and diseased human hearts

description: Fixed samples of human atria and ventricles were sectioned and immunostained for neural markers using the ABC method. Specific targets were tyrosine hydroxylase, vesicular ACh transporter, and PGP9.5. Regional nerve densities were quantified using ImageJ.
DOI: 10.26275/hybx-ggbt
title: Pig-specific computational models of monopolar vagus nerve stimulation with a six-contact cuff electrode

description: Computational models of monopolar pig vagus nerve stimulation with a six-contact cuff, built with ASCENT v1.0.1, using the histology for six pigs in which electrophysiological outputs were recorded in vivo.
DOI: 10.26275/3m1c-mke7
title: Pig-specific computational models of monopolar vagus nerve stimulation with a six-contact cuff electrode

description: Computational models of monopolar pig vagus nerve stimulation with a six-contact cuff, built with ASCENT v1.0.1, using the histology for six pigs in which electrophysiological outputs were recorded in vivo.
DOI: 10.26275/df7j-e48n
title: Pig-specific computational models of monopolar vagus nerve stimulation with a six-contact cuff electrode

description: Computational models of monopolar pig vagus nerve stimulation with a six-contact cuff, built with ASCENT v1.0.1, using the histology for six pigs in which electrophysiological outputs were recorded in vivo.
DOI: 10.26275/an3t-lg5l
title: Computational model of vagus nerve stimulation in mice with bipolar cuff electrode

description: Computational model of vagus nerve stimulation in mice with a bipolar cuff electrode, built with ASCENT v1.1.4, using a generalized nerve morphology.
DOI: 10.26275/mroo-iatc
title: Computational model of vagus nerve stimulation in mice with bipolar cuff electrode

description: Computational model of vagus nerve stimulation in mice with a bipolar cuff electrode, built with ASCENT v1.1.4, using a generalized nerve morphology.
DOI: 10.5281/zenodo.13489378
title: Coopetition as an ecological dynamic: interactions between dense seasonal macroalgal mats and oysters on temperate shellfish reefs

description: We document the proliferation of dense algal mats on intertidal oyster reefs in the Southeastern USA. We also use data from a small field experiment to understand the effects that oysters have on macroalgae. The data and code included here can be used to replicate all analyses and figures in the manuscript.
DOI: 10.26275/3g8i-abjh
title: A 3D human whole-body model with integrated organs vasculature musculoskeletal and nervous systems for mapping nerves

description: The generated body scaffold was fitted to data, and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold. Furthermore, nerve centrelines are added.
DOI: 10.26275/qonw-sqix
title: Computational model of vagus nerve stimulation in mice with bipolar cuff electrode

description: Computational model of vagus nerve stimulation in mice with a bipolar cuff electrode, built with ASCENT v1.1.4, using a generalized nerve morphology.
DOI: 10.26275/6i7a-flkr
title: A 3D human whole-body model with integrated organs vasculature musculoskeletal and nervous systems for mapping nerves

description: The generated body scaffold was fitted to data, and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold. Furthermore, nerve centrelines are added.
DOI: 10.26275/0nio-xric
title: A 3D human whole-body model with integrated organs vasculature musculoskeletal and nervous systems for mapping nerves

description: The generated body scaffold was fitted to data, and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold. Furthermore, nerve centrelines are added.
DOI: 10.26275/s3l0-t915
title: A 3D human whole-body model with integrated organs vasculature musculoskeletal and nervous systems for mapping nerves

description: The generated body scaffold was fitted to data, and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold. Furthermore, nerve centrelines are added.
DOI: 10.26275/sbxk-fwbu
title: Kember Cardiac Nerve Model

description: Simulation and viewer for a model of autonomic control of cardiac function contributed by Prof. Guy Kember from Dalhousie University.
DOI: 10.26275/e3n7-vei4
title: Computational model of laryngeal muscle activation in mice during vagus nerve stimulation

description: Model of motor unit activation in laryngeal muscles.
DOI: 10.26275/ncok-1cof
title: Computational model of heart rate modulation in mice during vagus nerve stimulation

description: Network model of parasympathetic innervation of the sinoatrial node.
DOI: 10.26275/epqk-toxj
title: Histology-based computational models of implanted human cervical vagus nerve stimulation with the LivaNova helical cuff electrode

description: Fibers in Smaller Fascicles Have Lower Activation Thresholds with Cuff Electrodes due to Thinner Perineurium and Smaller Cross-Sectional Area
description: Computational models and resulting activation thresholds of vagus nerve stimulation with the LivaNova helical cuff, built with ASCENT v1.1.1, using histology from nine human vagus nerves at the mid-cervical level.
DOI: 10.26275/7mdx-asxc
title: Histology-based computational models of implanted human cervical vagus nerve stimulation with the LivaNova helical cuff electrode

description: Fibers in Smaller Fascicles Have Lower Activation Thresholds with Cuff Electrodes due to Thinner Perineurium and Smaller Cross-Sectional Area
description: Computational models and resulting activation thresholds of vagus nerve stimulation with the LivaNova helical cuff, built with ASCENT v1.1.1, using histology from nine human vagus nerves at the mid-cervical level.
DOI: 10.26275/lk0e-kgrs
title: Population of mock morphological models of vagus nerve stimulation with cuff electrodes for the purpose of studying the effect of fascicle diameter on activation threshold

description: Fibers in Smaller Fascicles Have Lower Activation Thresholds with Cuff Electrodes due to Thinner Perineurium and Smaller Cross-Sectional Area
description: Computational models and resulting activation thresholds of vagus nerve stimulation for simplified nerve morphologies, built with ASCENT v1.0.3. Modeled electrode designs include monopolar and clinical LivaNova helical cuffs.
DOI: 10.26275/53cg-hai1
title: Computational-based mechanical analysis of Fecobionics data

description: Code and computational model associated with the Fecobionics device studies.
DOI: 10.26275/wh9h-tbew
title: Topographical mapping of sympathetic postganglionic innervation of the mouse heart

description: Anatomical mapping of sympathetic efferent projection to the mouse heart
DOI: 10.26275/zsop-bygv
title: Visceromotor responses (VMR) to colorectal distension in mice with silenced or activated enterochromaffin cells

description: Mouse genetic models to manipulate enterochromaffin cell activity
description: Visceromotor responses (VMR) to colorectal distension (CRD) measured by EMG recordings from electrodes implanted in the abdominal musculature.
DOI: 10.26275/do5j-mz5q
title: Decoding vagus nerve activity with carbon nanotube sensors in freely moving rodents

description: Chronic recording in the vagus nerve with carbon nanotube yarn (CNTY) electrodes.
description: A carbon nanotube yarn (CNTY) biosensor was used to chronically record from the vagus nerves of freely moving rats for over 40 continuous hours.
DOI: 10.26275/f5se-ynpk
title: Histology of pig cervical vagus nerve

description: Trichrome stained histology of the pig cervical vagus nerve at the region of vagus nerve stimulation (VNS).
DOI: 10.26275/s00b-gket
title: Multi-scale rabbit cardiac electrophysiology models

description: A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model. 
Caption: Illustration of ion channels and action potential propogation in cardiac tissue.
DOI: 10.26275/tfdf-w3hq
title: Expression Data Visualization tool

description: SPARC FAIR Codeathon 2022
description: Tutorial developed during the SPARC Fair Codeathon 2022
DOI: 10.15468/dl.5gtaam
title: Occurrence Download

description: A dataset containing 52633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acrogenospora, Apiosporaceae, Apiosporaceae, Brachydesmiella G.Arnaud ex S.Hughes, Chaetomium Kunze, 1817, Cladosporium Link, 1816, Gliomastix Guég., 1905)",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2024",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 52633 records from 227 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030626-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26275/dhe4-zh53
title: Multi-scale human cardiac electrophysiology models

description: A multi-scale model of cardiac electrophysiology
description: A computational workflow for integration and implementation of a reusable and reproducible human cardiac multi-scale electrophysiology model. 
Caption: Illustration of ion channels and action potential propogation in cardiac tissue
DOI: 10.26275/59t4-jlnz
title: Human cervical vagus nerve fascicle imaging with MicroCT

description: MicroCT imaging of the human cervical vagus nerve: slices at 0.5 cm spacing are provided across a 5 cm window representing the surgical window typical of vagus nerve stimulation. Derived data include fascicle morphometry, splitting and merging events.
DOI: 10.26275/cdjq-pjlb
title: A multiscale predictive digital twin for neurocardiac modulation in rabbits

description: A digital twin for predicting neuromodulation
DOI: 10.26275/1phd-nw4a
title: Fecobionics study in fecal incontinence (FI) subjects

description: Fecobionics studies in human participants
description: We are developing a novel wireless device named Fecobionics for mapping colonic and anorectal neuromuscular function. The current dataset contains results from the Fecobionics test in the anorectal of human subjects with fecal incontinence.
DOI: 10.26275/uz3t-mppx
title: Fecobionics study in fecal incontinence (FI) human subjects

description: Fecobionics studies in human participants
description: We are developing a novel wireless device named Fecobionics for mapping colonic and anorectal neuromuscular function. The current dataset contains results from the Fecobionics test in the anorectal of human subjects with fecal incontinence.
DOI: 10.26275/pg50-j9eu
title: Validated computational models predict vagus nerve stimulation thresholds in preclinical animals and humans

description: Validated computational models of rat (Micro-Leads Neuro, n=1), pig (LivaNova, n=20), and human (LivaNova, n=9) vagus nerve stimulation, built with ASCENT v1.1.1, using histology to define nerve morphologies, and using the cuff electrodes and waveforms
DOI: 10.26275/vdpw-rjqu
title: Validated computational models predict vagus nerve stimulation thresholds in preclinical animals and humans

description: Validated computational models of rat (Micro-Leads Neuro, n=1), pig (LivaNova, n=20), and human (LivaNova, n=9) vagus nerve stimulation, built with ASCENT v1.1.1, using histology to define nerve morphologies, and using the cuff electrodes and waveforms
DOI: 10.26275/wglu-jiud
title: Validated computational models predict vagus nerve stimulation thresholds in preclinical animals and humans

description: Validated computational models of rat (Micro-Leads Neuro, n=1), pig (LivaNova, n=20), and human (LivaNova, n=9) vagus nerve stimulation, built with ASCENT v1.1.1, using histology to define nerve morphologies, and using the cuff electrodes and waveforms
DOI: 10.26275/wabs-qul8
title: Closed-loop modeling of central and intrinsic cardiac nervous system circuits underlying cardiovascular control

description: Data and plotting code to produce figures and tables published in the manuscript (https://doi.org/10.1002/aic.18033)
DOI: 10.26275/zpxh-rqlw
title: BIOS Health Vagus Nerve Stimulation Calibrator

description: A tool to target nerve fibre responses to VNS and combine data across pre-clinical cohorts to enhance the tool’s efficiency during intra-operative use in neuromodulation studies
DOI: 10.26275/qjpu-t0sy
title: Scaffold map - Quantitative analysis of enteric neurons containing choline acetyltransferase and nitric oxide synthase immunoreactivities in the submucosal and myenteric plexuses of the porcine colon

description: Choline acetyltransferase and nitric oxide synthase immunoreactivities in the inner submucosal plexus of the ascending porcine colon are mapped onto the pig colon scaffold.
DOI: 10.26275/3q5o-leo5
title: Effect of chronic gastric electrical stimulation on the feeding behavior of diet-induced obese male Sprague-Dawley rats consuming a 45% high-fat diet

description: Microstructural analysis of food intake as a behavioral endpoint to determine the effect of chronic gastric electrical stimulation on the consumption of a 45% high-fat diet by diet-induced obese male Sprague-Dawley rats
DOI: 10.26275/pa9i-likc
title: Ussing chamber experiments for distension evoked secretion in human colon

description: Distention evoked secretion in human colon
DOI: 10.26275/rhda-nblc
title: CLARITY and 3D imaging with high resolution and deep scanning of innervation in the pig colon by using SP8 DIVE fully tunable spectral multiphoton microscope

description: Deep scanning of innervation in the pig colon by using SP8 DIVE multiphoton microscope
DOI: 10.5066/p1xfkkyh
title: Sample details and near-real-time ED-XRF data collected during the 2020-2023 Halema‘uma‘u eruptions of Kīlauea volcano, Island of Hawaiʻi

description: A limited suite of samples for the 2020–2023 Kīlauea eruptions within Kaluapele (the summit caldera) were collected by the U.S. Geological Survey’s Hawaiian Volcano Observatory (HVO) field teams from within a publicly closed area of Hawai‘i Volcanoes National Park in cooperation with the National Park Service. This data release presents sample metadata, whole rock ED-XRF, whole rock WD-XRF, whole rock LA-ICP-MS, glass EPMA, glass LA-ICP-MS, leachate, and isotope data for these samples.
DOI: 10.26275/efbj-8evl
title: Stimulation of the pig vagus nerve to modulate target effect versus side effect

description: This dataset contains the electroneurography, electromyography, and histology of pig vagus nerve, following vagus nerve stimulation with the ImThera stimulating cuff.
DOI: 10.26275/g9qv-rl2d
title: QuiltedTutorials 1 – Mapping 2D Data to 3D Organ Scaffold

description: SPARC FAIR Codeathon 2022
description: This tutorials shows how to project 2D anatomical data to 3D organ scaffolds available on the SPARC Portal
DOI: 10.26275/t4pn-ss3z
title: Cardiovascular system model for comprehending the acute cardiac effects of vagus nerve stimulation

description: This model represents an evolved iteration of the original Simulink model that emulates the acute cardiac outcomes resulting from vagus nerve stimulation, as initially proposed by Haberbusch et al (see associated publications)
DOI: 10.26275/5yvu-tr0d
title: Cardiovascular system model for comprehending the acute cardiac effects of vagus nerve stimulation

description: This model represents an evolved iteration of the original Simulink model that emulates the acute cardiac outcomes resulting from vagus nerve stimulation, as initially proposed by Haberbusch et al (see associated publications)
DOI: 10.26275/swkm-bzmg
title: Calcium imaging tension recording and pellet transit in mouse colon in response to stimulation of the pelvic nerve (PNS)

description: Comprehensive Structural and Functional Mapping of Mammalian Colonic Nervous System
description: Effect of electrical stimulation of the vagus nerve on colonic contractions, colonic pellet transit, and colonic neuron/ICC calcium activity
DOI: 10.26275/8zuc-gst1
title: Mid-lumbar (L3) epidural stimulation effects on bladder and external urethral sphincter in non-injured and chronically transected urethane-anesthetized rats

description: In the current pre-clinical study, the L3 was targeted with scES to examine whether the EUS could be modulated under intact and chronic complete SCI conditions.
DOI: 10.26275/gfwu-pi0p
title: MicroCT imaging of the fascicular structure in the porcine right and left cervical vagus nerve

description: A neuroprosthesis to restore the vagal-cardiac closed-loop connection after heart transplantation
description: This dataset provides a collection of microCT scans of the left and right vagus nerves from domestic pigs. Scans were captured, spanning a 15-20 cm window from the nodose ganglion to the superior cardiac branch, with a precision of 20 um slice intervals.
DOI: 10.26275/f1pu-do9y
title: SPARC Metadata Editor – Tutorials

description: SPARC FAIR Codeathon 2022
description: Series of Jupyter notebook tutorials showing how to use sparc-me, a python tool to explore, enhance, and expand SPARC datasets and their descriptions in accordance with FAIR principles.
DOI: 10.26275/nuwh-mtsd
title: SPARClet - Interactive flatmaps

description: SPARC FAIR Codeathon 2022
description: A python library to generate and interact with flatmaps in a jupyter notebook using the ipyleaflet library