cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wr52r4
title: Occurrence Download

description: A dataset containing 13750 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chelodina longicollis (Shaw, 1794)"
 ]
}

 The dataset includes 13750 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065978-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7hhx95
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1841.96897 -3.02885,-1841.3264 -3.02885,-1841.3264 -0.85418,-1841.96897 -0.85418,-1841.96897 -3.02885))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mollusca"
 ]
}

 The dataset includes 82 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139413-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsmqxd
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloysia hatschbachii Moldenke"
 ]
}

 The dataset includes 75 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004279-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt5yqn
title: Occurrence Download

description: A dataset containing 43287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "HasCoordinate is TRUE",
 "Country is Colombia"
 ]
}

 The dataset includes 43287 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007226-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.exqbpi
title: Occurrence Download

description: A dataset containing 274014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Aves",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 274014 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004279-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jeu4a
title: Occurrence Download

description: A dataset containing 6238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (August, July, June, May, April, March, February, January, December)",
 "TaxonKey is Antigone canadensis (Linnaeus, 1758)",
 "Year 1980-1990"
 ]
}

 The dataset includes 6238 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032133-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yswumg
title: Occurrence Download

description: A dataset containing 1185 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Abies sibirica Ledeb.",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 1185 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023240-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dzrc1j
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave desmettiana Jacobi"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004280-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9x6t7w
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clematis bojeri Hook."
 ]
}

 The dataset includes 101 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0139437-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh9nqv
title: Occurrence Download

description: A dataset containing 143255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asclepias L."
 ]
}

 The dataset includes 143255 records from 580 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007241-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64xqf4
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Propagación de especies leñosas y herbáceas en categoría de conservación. Proyecto Desarrollo Mantoverde (RCA Nº16/2018, MMA)"
 ]
}

 The dataset includes 68 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012273-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ds03ro
title: Occurrence Download

description: A dataset containing 2933 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes d'Alain BERLY"
 ]
}

 The dataset includes 2933 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024514-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ps24z4
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bivalvia",
 "HasCoordinate is true",
 "Country is one of (Luxembourg)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 137 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228387-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzipuv
title: Occurrence Download

description: A dataset containing 859420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway"
 ]
}

 The dataset includes 859420 records from 968 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004411-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xp2jx
title: Occurrence Download

description: A dataset containing 1421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.28_1",
 "TaxonKey is Athene cunicularia (Molina, 1782)"
 ]
}

 The dataset includes 1421 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012274-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynuzmx
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lasioglossum pectinatum (Robertson, 1890)"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0367541-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fshijf
title: Occurrence Download

description: A dataset containing 51628 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is France",
 "Country is Spain",
 "Country is Portugal",
 "Country is Andorra"
 ]
 },
 "TaxonKey is Erica cinerea L."
 ]
}

 The dataset includes 51628 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016700-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qm4nky
title: Occurrence Download

description: A dataset containing 323321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.46748 3.24865,-76.22128 8.76106,-75.91504 14.08971,-81.73369 18.00964,-84.79613 19.17337,-86.32736 23.39955,-94.04472 21.68458,-98.14679 24.73376,-110.76029 29.92158,-118.08427 30.0233,-118.23805 22.78706,-107.64199 7.84232,-79.46748 3.24865))",
 "TaxonKey is Scarabaeidae"
 ]
}

 The dataset includes 323321 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119153-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kw97pu
title: Occurrence Download

description: A dataset containing 3378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acherontia atropos Linnaeus, 1758)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 3378 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228411-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zbpt0
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Convolvulus nodiflorus Desv.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 103 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003080-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c5tpp
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardionema burkartii Subils"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119191-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p53zqk
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "TaxonKey is Bitis gabonica Duméril, Bibron & Duméril, 1854"
 ]
}

 The dataset includes 121 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228436-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6brcs
title: Occurrence Download

description: A dataset listing the 759 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample"
 ]
 },
 "Geometry POLYGON((-106.89148 30.17362,-106.10046 30.17362,-106.10046 31.73751,-106.89148 31.73751,-106.89148 30.17362))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 759 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003105-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86mu4f
title: Occurrence Download

description: A dataset containing 9695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sabellariidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 9695 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018637-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvba5c
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthozoa",
 "HasCoordinate is true",
 "Country is one of (Luxembourg)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228404-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emclj4
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-10 35,5 35,5 44,-10 44,-10 35))",
 "HasCoordinate is true",
 "TaxonKey is Asplenium trichomanes subsp. trichomanes",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 133 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013192-200127171203522/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/9abd-dd83
title: Coupled Coastal Hazard Prediction System (CCHaPS) Hindcast for Australia

description: CCHaPS, the Coupled Coastal Hazard Prediction System, is a 2D hydrodynamic and wave model (Semi-implicit Cross-scale Hydroscience Integrated System Model and Wind Wave Model III, SCHISM-WWMIII), configured around the Australian coastline including the Great Barrier Reef, and extending out to deep offshore waters or neighbouring landmasses.

The model simulates water levels due to astronomical tides, weather, waves and aspects of wave-flow interaction over multiple decades, allowing for full consideration of the dynamics of extreme sea levels and waves in the Australian region, at high spatial resolution from ~7km off-shore down to ~250m at the coast, and ~100m in major river mouths. The model is run on an unstructured (triangular) grid comprising over 1.4 million nodes, which extends overland up to a 12m elevation contour, to enable modelling of inundation events and sea level rise.

The CCHaPS hindcast covers the 40-year period 1981 to 2020. 
The hindcast is forced with downscaled ERA5 winds produced by BARRA-R2, water levels from ORAS5, tides from TPXOv9.2, and spectral wave forcing from WHACS (see Lineage).
The model used is SCHISM-WWMIII v5.9, using ST4 wave physics, run on NCI's Gadi supercomputer.

The dataset comprises hourly netCDF data on an unstructured grid, compliant with CF, ACDD and UGRID metadata conventions. A notebook demonstrating how to interact with the data will be attached under Supporting Documentation, and also available via GitHub (see Related Links, LINK TBA).
Variables included are: depth (non-time varying), sea surface height, wet-dry node, currents, significant wave height, mean wave direction, peak wave direction, directional spreading, t01 and t02 mean wave period, peak wave period, peak directional spreading, peak direction (rad), and orbital velocity.

The data is also stored on CSIRO infrastructure in the {ev-acs-wp3-cchaps} volume, and at NCI in /g/data/ia39/WP3/release/CCHaPS.
 
A manuscript describing this dataset is in preparation and will be linked to this metadata record in due course.
DOI: 10.5281/zenodo.15232614
title: The effect of enhanced glycolysis on cardiac aging

description: Metabolomics data set for: 

Faakye A, Harold KM, Matsuzaki S, Pranay A, Mendez Garcia MF, Loveland BL, Rigsby SN, Peelor FF 3rd, Eyster C, Miller BF, Griffin TM, Kinter M, Chiao YA, Humphries KM. The effect of enhanced glycolysis on cardiac aging. Geroscience. 2025 May 1. doi: 10.1007/s11357-025-01656-z. Epub ahead of print. PMID: 40310487.

Abstract:Cardiac aging is associated with metabolic changes, including an increased reliance on glycolysis, and an increased susceptibility to cardiovascular diseases. This study explores the relationship between enhanced cardiac glycolysis and aging using the GlycoHi mouse model, characterized by constitutively elevated glycolysis. We compared cardiac function, metabolism, mitochondrial performance, and hallmarks of aging between aged (21 and 24 months) GlycoHi and wild-type (WT) mice across sexes. Our findings reveal modest reductions in cardiac function in aged GlycoHi mice compared to WT mice, with sex-specific differences in heart size and collagen concentration. Female GlycoHi hearts exhibited hypertrophy without fibrosis, while males showed elevated collagen levels. Whole-body metabolic assessments revealed similar energy expenditure and respiratory patterns across genotypes, with females displaying less circadian-associated variation in metabolism. Mitochondrial analyses showed that aged GlycoHi hearts maintained metabolic adaptations favoring glycolysis but did not exhibit significant bioenergetic dysfunction or oxidative stress. Pyruvate dehydrogenase activity, initially elevated in younger GlycoHi hearts, normalized to WT levels with age. Proteomic and metabolomic analyses highlighted distinct profiles between genotypes, with GlycoHi hearts exhibiting increased glycolytic enzyme levels and reduced abundance of fatty acid oxidation proteins. Despite these differences, indicators of oxidative stress, proteostasis, and cellular senescence were comparable between genotypes, suggesting no acceleration of aging-related dysfunction. This study demonstrates that increased cardiac glycolysis alone does not suffice to drive accelerated cardiac aging. Instead, metabolic and functional changes in aged GlycoHi hearts reflect adaptations rather than pathological declines, providing insights into potential metabolic targets for interventions against cardiac aging.

Data is from an Agilent 6546 LC/Q-TOF coupled to an Agilent 1290 Infinity II LC

See 10.5281/zenodo.15605976 for remaining files.
DOI: 10.5281/zenodo.15232615
title: The effect of enhanced glycolysis on cardiac aging

description: Metabolomics data set for: 

Faakye A, Harold KM, Matsuzaki S, Pranay A, Mendez Garcia MF, Loveland BL, Rigsby SN, Peelor FF 3rd, Eyster C, Miller BF, Griffin TM, Kinter M, Chiao YA, Humphries KM. The effect of enhanced glycolysis on cardiac aging. Geroscience. 2025 May 1. doi: 10.1007/s11357-025-01656-z. Epub ahead of print. PMID: 40310487.

Abstract:Cardiac aging is associated with metabolic changes, including an increased reliance on glycolysis, and an increased susceptibility to cardiovascular diseases. This study explores the relationship between enhanced cardiac glycolysis and aging using the GlycoHi mouse model, characterized by constitutively elevated glycolysis. We compared cardiac function, metabolism, mitochondrial performance, and hallmarks of aging between aged (21 and 24 months) GlycoHi and wild-type (WT) mice across sexes. Our findings reveal modest reductions in cardiac function in aged GlycoHi mice compared to WT mice, with sex-specific differences in heart size and collagen concentration. Female GlycoHi hearts exhibited hypertrophy without fibrosis, while males showed elevated collagen levels. Whole-body metabolic assessments revealed similar energy expenditure and respiratory patterns across genotypes, with females displaying less circadian-associated variation in metabolism. Mitochondrial analyses showed that aged GlycoHi hearts maintained metabolic adaptations favoring glycolysis but did not exhibit significant bioenergetic dysfunction or oxidative stress. Pyruvate dehydrogenase activity, initially elevated in younger GlycoHi hearts, normalized to WT levels with age. Proteomic and metabolomic analyses highlighted distinct profiles between genotypes, with GlycoHi hearts exhibiting increased glycolytic enzyme levels and reduced abundance of fatty acid oxidation proteins. Despite these differences, indicators of oxidative stress, proteostasis, and cellular senescence were comparable between genotypes, suggesting no acceleration of aging-related dysfunction. This study demonstrates that increased cardiac glycolysis alone does not suffice to drive accelerated cardiac aging. Instead, metabolic and functional changes in aged GlycoHi hearts reflect adaptations rather than pathological declines, providing insights into potential metabolic targets for interventions against cardiac aging.

Data is from an Agilent 6546 LC/Q-TOF coupled to an Agilent 1290 Infinity II LC

See 10.5281/zenodo.15605976 for remaining files.
DOI: 10.15468/dl.i82v3t
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloscartes roquettei E.Snethlage, 1928"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024312-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erqv8z
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphenarium Charpentier, 1845"
 ]
}

 The dataset includes 93 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001038-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.