cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tkdffe
title: Occurrence Download

description: A dataset containing 726513 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygonatum"
 ]
}

 The dataset includes 726513 records from 2540 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011626-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29197193.v1
title: study data_CO2_food security.xlsx

description: Impact of rising CO<sub>2</sub> on food security and human health risks and potential adaptation strategies.Decades of Free Air CO<sub>2</sub> Enrichment (FACE) experiments show that projected atmospheric carbon dioxide (CO<sub>2</sub>) increases significantly influence crop systems, impacting food security. Firstly, elevated CO<sub>2</sub> (eCO<sub>2</sub>) benefits global C<sub>3</sub> crop yields, despite substantial genetic variation. Lower-than-expected rice yield increases highlight the potential to augment the CO<sub>2</sub> fertilization effect (CFE) by enhancing nitrogen (N) uptake to facilitate carbon (C) assimilation. Secondly, CFE consistently correlates with declining nutritional quality. Concomitant CO<sub>2</sub> and temperature increases synergistically elevate toxic arsenic (As) in rice grain, projecting substantial cancer case increases in major rice-consuming countries. This assessment underscores the urgency for strategies mitigating nutrient decline and As exposure from near-term climate change. Thirdly, current estimates suggest long-term eCO<sub>2</sub> minimally impacts soil N availability. However, risks include decreasing soil phosphate (P) availability and intensifying greenhouse gas emissions (methane [CH<sub>4</sub>], nitrous oxide [N<sub>2</sub>O]), challenging food security sustainability. Fourthly, global food security inequity will likely worsen. Poorer regions, often heavily reliant on few cereal crops and affected by climate variability and uneven resource distribution, are more vulnerable to eCO<sub>2</sub>. Thus, implementing diverse, region-specific adaptation strategies—encompassing agronomic management, crop breeding, and policymaking—is crucial for establishing climate-resilient agricultural ecosystems.
DOI: 10.6084/m9.figshare.7692398.v2
title: Comparison of murine steatohepatitis models identifies a dietary intervention with robust fibrosis, ductular reaction and rapid progression to cirrhosis, cancer

description: supplementary figures and tables
DOI: 10.17632/2fzbnpnsdp
title: Data for: Use of public Earth Observation data for tracking progress in sustainable management of coastal forest ecosystems in Belize, Central America

description: This dataset depicts Belize's national mangrove cover for the period November 1980 through February 2017, based on the ~1990 baseline established by Simon Zisman. The dataset was developed by using satellite imagery to detect where how mangrove cover has changed between 1980 and 2017. The source data for this effort include Landsat-3 Multispectral Scanner (MSS) imagery, Landsat-5 Thematic Mapper (Landsat TM) imagery, Landsat-7 Enhanced Thematic Mapper Plus (Landsat ETM+) imagery, and Landsat-8 Operational Land Imager (OLI) imagery. A full description of the process by which the data were generated is provided in “Use of public Earth Observation data for tracking progress in sustainable management of coastal forest ecosystems in Belize, Central America,” by Cherrington et al.
DOI: 10.17632/fx898gcrvy
title: Table 3. From raw data to themes. Blockchain technology for the circular economy within Global Value Chains.

description: Proccess from raw data to condensed meaning units, codes, sub-themes, and themes. Regarding the use of blockchain technology in global value chains for the circular economy.
DOI: 10.6084/m9.figshare.18585539.v1
title: Supplementary Material for: Ammonia Clearance with Different Continuous Renal Replacement Therapy Techniques in Patients with Liver Failure

description: <b><i>Introduction:</i></b> Continuous renal replacement therapy (CRRT) can be used to treat hyperammonaemia. However, no study has assessed the effect of different CRRT techniques on ammonia clearance. <b><i>Methods:</i></b> We compared 3 different CRRT techniques in adult patients with hyperammonaemia, liver failure, and acute kidney injury. We protocolized CRRT to progressively deliver continuous veno-venous haemofiltration (CVVH), haemodialysis (CVVHD) or haemodiafiltration (CVVHDF). Ammonia was simultaneously sampled from the patient’s arterial blood and effluent fluid for each technique. We applied accepted equations to calculate clearance. <b><i>Results:</i></b> We studied 12 patients with a median age of 47 years (interquartile range [IQR] 25–79). Acute liver failure was present in 4 (25%) and acute-on-chronic liver failure in 8 (75%). There was no significant difference in median ammonia clearance between CRRT technique; CVVH: 27 (IQR 23–32) mL/min versus CVVHD: 21 (IQR 17–28) mL/min versus CVVHDF: 20 (IQR 14–28) mL/min, <i>p</i> = 0.32. Moreover, for all techniques, ammonia clearance was significantly less than urea and creatinine clearance; urea 50 (47–54) mL/min versus creatinine 42 (IQR 38–46) mL/min versus ammonia 25 (IQR 18–29) mL/min, <i>p</i> = 0.0001. <b><i>Conclusion:</i></b> We found no significant difference in ammonia clearance according to CRRT technique and demonstrated that ammonia clearance is significantly less than urea or creatinine clearance.
DOI: 10.6084/m9.figshare.22691071.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.23989398.v1
title: Energy flux couples sulfur isotope fractionation to proteomic and metabolite profiles in <i>Desulfovibrio vulgaris</i>

description: Manuscript Title: Energy flux couples sulfur isotope fractionation to proteomic and metabolite profiles in <i>Desulfovibrio vulgaris</i>Dataframes1: chemostat data, bulk S isotopes, cellular S isotopes, metabolites (as csv);Dataframe 2: DvH lipid abundance and H isotope composition relative to water (as csv);Dataframe 3: reduced proteomic data (as csv)Supplemental Figures (as PDF).
DOI: 10.6084/m9.figshare.26417812.v1
title: Investor sentiment data

description: This raw dataset contains the investor sentiment index, interest rate data, money supply data, exchange rate data, price levels data in South Africa from 2000 to 2023.
DOI: 10.6084/m9.figshare.6981563.v2
title: Dataset for "Similarity in fog and rainfall intermittency"

description: Final data used in the study "Similarity in fog and rainfall intermittency". <br>
DOI: 10.17632/csjmvmzckf
title: Data for: Behavioural variation in the invasive cellar spider Pholcus manueli (Araneae: Pholcidae)

description: Behavioral measurements of an invasive spider across its United States invasive range. 

Sheet 1 (Mating):
Columns includes range (core or leading edge), population (baltimore, college park, new brunswick, south dakota, nebraska, or kansas), subpopulation (where in each population a spider was encountered), female id, female mass (mg), female size (mm), male id, male mass (mg), male size (mm), mate (whether mating occurred: 1 - yes, 0 -no) , whether a male was used twice in mating trials, female mating status, female body condition, male body condition.

Sheet 2 (Puff):
Columns include range (core or leading edge), population (baltimore, college park, new brunswick, south dakota, nebraska, or kansas), subpopulation (where in each population a spider was encountered), sex (female or male), distance (cm).

Sheet 3 (Prod):
Columns include range (core or leading edge), population (baltimore, college park, new brunswick, south dakota, nebraska, or kansas), subpopulation (where in each population a spider was encountered), sex (female or male), distance (cm).

Sheet 4 (Exploration):
Columns includes range (core or leading edge), population (baltimore, college park, new brunswick, south dakota, nebraska, or kansas), subpopulation (where in each population a spider was encountered), id number, mass (mg), size (mm), times in seconds initially exploring, times in seconds spent stationary after initial exploration, times in seconds moving over a 10 minute period following the stationary period, body condition, range as a binomial (1- leading edge, 0 - core), sex binomial (1 - female, 0 - male).
DOI: 10.5522/04/28678592.v1
title: Experiment record for photometry dataset to for all photometry figures except ED Fig 5O-Y and ED Fig 12

description: Dopaminergic action prediction errors serve as a value-free teaching signal<br>Animals’ choice behavior is characterized by two main tendencies: taking actions that led to rewards and repeating past actions. Theory suggests these strategies may be reinforced by different types of dopaminergic teaching signals: reward prediction error to reinforce value-based associations and movement-based action prediction errors to reinforce value-free repetitive associations. Here we use an auditory-discrimination task in mice to show that movement-related dopamine activity in the tail of the striatum encodes the hypothesized action prediction error signal. Causal manipulations reveal that this prediction error serves as a value-free teaching signal that supports learning by reinforcing repeated associations. Computational modelling and experiments demonstrate that action prediction errors alone cannot support reward-guided learning but when paired with the reward prediction error circuitry they serve to consolidate stable sound-action associations in a value-free manner. Together we show that there are two types of dopaminergic prediction errors that work in tandem to support learning, each reinforcing different types of association in different striatal areas.This is the record of all fiber photometry recording experiments (except those in ED Fig 5O-Y and ED FIg 12). It contains mouse ID, date, experiment type as well as any annotated notes. It should be used in conjunction with 'Processed striatal dopamine fiber photometry data, required to reproduce all photometry figures (except EDfig5pqrstwvxy and EDfig12dfg)'.
DOI: 10.6084/m9.figshare.26065345.v1
title: Annotation-free prediction of microbial dioxygen utilization

description: Aerobes require dioxygen to grow; anaerobes do not. But nearly all microbes -- aerobes, anaerobes, and facultative organisms alike -- express enzymes whose substrates include oxygen, if only for detoxification. This presents a challenge when trying to assess which organisms are aerobic from genomic data alone. This challenge can be overcome by noting that oxygen utilization has wide-ranging effects on microbes: aerobes typically have larger genomes encoding distinctive oxygen-utilizing enzymes, for example. These effects permit high-quality prediction of oxygen utilization from annotated genome sequences, with several models displaying ~80% accuracy on a ternary classification task wherein blind guessing is only 33% accurate. Since genome annotation is compute-intensive and relies on many assumptions, we asked if annotation-free methods also perform well. We discovered that simple and efficient models based entirely on genome sequence content -- e.g. triplets of amino acids -- perform as well as intensive annotation-based classifiers, enabling rapid processing of genomes. We further show that amino acid trimers are useful because they encode information about protein composition and phylogeny. To showcase the utility of rapid prediction, we estimated the prevalence of aerobes and anaerobes in diverse natural environments cataloged in the Earth Microbiome Project.Focusing on a well-studied oxygen gradient in the Black Sea, we found quantitative correspondence between local chemistry (oxygen sulfide concentration ratio) and the composition of microbial communities. We therefore suggest that statistical methods like ours might be used to estimate, or "sense,'' pivotal features of the chemical environment using DNA sequencing data.<br>
DOI: 10.6084/m9.figshare.8479502.v1
title: Representative Genomes

description: Decontaminated, final representative genomes used for each population.<br>
DOI: 10.17632/yrgc2yntyc
title: Enhancement of gold enrichment by H2O in magmas

description: Raw data for all figures in the manuscript by Liu et al. to be submitted to Geochimica et Cosmochimica Acta
DOI: 10.6084/m9.figshare.19407242.v1
title: Data 2 Category

description: ToN IoT Category
DOI: 10.6084/m9.figshare.21647771.v1
title: full_protein_datasets.tar

description: full translated transcriptomic datasets for Karenia mikimotoi, Karenia papilionacea, Karlodinium micrum RCC3446, Karlodinium armiger, and Takayama helix; the raw sequence data are deposited at NCBI under BioProject ID PRJNA788341
DOI: 10.6084/m9.figshare.22302619.v1
title: Handelsman & Dotan 2013 number reading supplementary

description: Dysnumeria, a learning disorder that disrupts number reading and writing, hinders numerical literacy and thus disturbs everyday life. However, little is known about its prevalence or its origins. Here, we provide data on the number-reading performance of typical readers (n=143) and readers with dysnumeria (n=50), who read aloud 120 multi-digit numbers. The typical readers made 6.4% errors on average, and 6.2% of them turned out to have dysnumeria – similar to the reported prevalence of dyslexia and dyscalculia. We also analyzed the types of errors, as specific error types can be traced back to specific number-reading processes. Both typical readers and those with dysnumeria exhibited a high rate of syntactic errors, indicating that the main challenge in reading numbers is the need to handle the number’s syntactic structure.
DOI: 10.6084/m9.figshare.24589212.v1
title: Results for climate risk factor analysis

description: Climate risk factor analysis and data
DOI: 10.6084/m9.figshare.26232710.v1
title: phishing.arff

description: This folder contains the data from the Phishing Website dataset provided in [1]. All the features are categorical and were preprocessed in integer values. The data can be downloaded from https://archive.ics.uci.edu/dataset/327/phishing+websites. There are 11055 samples with 30 features. Websites belong to 2 domains: websites that use the IP address used instead of the domain name in the URL and websites that use the domain name in the URL. For reference, please refer to: [1] R. Mohammad, F. Thabtah, L. Mccluskey. An assessment of features related to phishing websites using an automated technique In International Conference for Internet Technology and Secured Transactions, 2012
DOI: 10.17632/59m69xdx2r
title: Intervenciones de prevención sobre el consumo de alcohol en jóvenes universitarios

description: Introducción: La ingesta de alcohol está condicionada por aspectos individuales y culturales. Objetivo: Identificar el efecto de intervenciones realizadas en el contexto latinoamericano sobre pautas de consumo o factores de riesgo asociados al consumo de alcohol en jóvenes universitarios. Materiales y Métodos: Revisión sistemática a partir de la pregunta PICO, Se realizó búsqueda desde abril a agosto del 2020 en las bases de PubMed, CUIDEN, BVS, Scielo, Google Scholar y Repositorios Gubernamentales. Se utilizaron descriptores DeCS y MeSH, en español, inglés y portugués con los operadores AND y OR. Criterios de elegibilidad: estudios experimentales y cuasi experimentales publicados entre 2014 y 2020. Se obtuvieron 49 artículos, la lectura crítica permitió seleccionar 8 a los cuales se les aplicaron las escalas AMSTAR2, TREND y CONSORT quedando 6 artículos para análisis. Según la Resolución 008430/93, Artículo 10, se consideró como investigación sin riesgo. Resultados: Intervenciones unicomponente reportaron efectos sobre creencias conductuales, actitudes, conocimiento de la sustancia, rendimiento académico, menor frecuencia de consumo y no conducir bajo efectos del alcohol. Las intervenciones multicomponente disminuyen en 3.03% el riesgo de consumo y reportan percepción positiva respecto a la utilidad de las actividades desarrolladas, satisfacción de expectativas, satisfacción general, calidad de materiales empleados, asistencia y puntualidad. Discusión:  Los estudios sugieren implementar nuevas intervenciones, estrategias y políticas en salud primaria para promover una transformación social, educativa y sanitaria que generen un impacto favorable para mitigar la problemática actual de consumo de alcohol en jóvenes universitarios.  Conclusiones: Esta revisión sistemática permitió sintetizar y valorar la evidencia disponible frente a intervenciones unicomponente y multicomponente realizadas en el contexto latinoamericano y del caribe que modifican positivamente factores de riesgo y pautas de consumo en jóvenes universitarios.
DOI: 10.6084/m9.figshare.11881440.v1
title: DRE diversity data

description: These data are diversity responses to three treatments over four years of vegetation sampling. Note SLA and height were only measured in 2014.
DOI: 10.6084/m9.figshare.21218462.v1
title: 0.75cm Tumour data.zip

description: Comprehensive MATLAB-based file (CERR) for DVHs analysis, dose distributions, dose wash demonstrations, and full dose values for PLOS ONE publication.
DOI: 10.6084/m9.figshare.21550428.v2
title: Covid.rda

description: Predictors for Covid-19 death
DOI: 10.17632/cwgswk84wv
title: Factors related to healthcare costs of road traffic accidents in Bucaramanga, Colombia

description: Diseño del estudio y población 
Estudio descriptivo, transversal, con análisis de datos secundarios provenientes de los registros de accidentes de tránsito de Bucaramanga en 2019, proporcionados por la Dirección de Tránsito y el Observatorio Digital municipal de Bucaramanga, muestreo tipo censo.

Recolección de datos
Con base en los 7,038 registros de personas involucrados de un total de 3,150 siniestros de tránsito ocurridos en Bucaramanga en 2019 reportados por la Dirección de Tránsito y la información de atención en salud del Observatorio Digital Municipal a partir de las diferentes Instituciones Prestadoras de Salud (IPS), se obtuvo información de costos de 812 personas atendidas en las IPS de la ciudad; posteriormente, se realizó la extracción, depuración y cruzamiento de las bases de datos. Ver Figura 1. 

La variable dependiente fue costos directos derivados de la atención en salud (urgencias, hospitalización, quirófanos), que las IPS reportaron a la Secretaria de Salud de Bucaramanga que incluyen la valoración/atención (médico general, especialista y atención de enfermería), las ayudas diagnosticas (laboratorios, rayos X, tomografías, Resonancias, etc.) y tratamientos instaurados (medicamentos, procedimientos quirúrgicos). 

Además, se tuvieron en cuenta las siguientes covariables: identificador, genero(femenino, masculino), edad (en años y en categorías de <18 años, 18-25, 26-35, 36-45, 46-60 y >60 años), tipo de vehículo involucrado (automóvil, motocicleta, camioneta, camión, bus), hipótesis del accidente (desobedecer señales y normas de tránsito, no mantener la distancia segura, girar bruscamente, impericia en el manejo, exceso de velocidad, adelantar invadiendo el carril), lugar de ocurrencia, porte de licencia, porte del seguro obligatorio de accidente de tránsito, sitio de atención en salud, gravedad, fecha de ocurrencia, día de la semana (lunes, martes, miércoles, jueves,. Viernes, sábado o domingo), comuna, instituciones prestadoras de servicios de salud, requerimiento de cirugía, muerte, parte del cuerpo afectada (cabeza, cuello, tórax, abdomen, miembros superiores, miembros inferiores, diferentes partes del cuerpo, tejidos blandos, genitales, esta variable organizada en base a los códigos CIE-10) diagnóstico, actor vial y costo general de la atención en salud en pesos colombianos. 
 
Continua en Step for reproduction
DOI: 10.6084/m9.figshare.22543456.v1
title: Above Ground Storage Tank Aerial Imagery Dataset

description: The above-ground storage tank aerial imagery dataset provides a ready-to-use training dataset for deep-learning models. This data citation is comprised of two folders which contain 512-by-512 pixel images stored in jpg format ("images" folder) and the corresponding annotations in PASCAL Visual Object Classes (VOC) 2007 format as Extensible Markup Language (XML) files ("xmls" folder).
DOI: 10.6084/m9.figshare.26303791.v3
title: Data of soil gross protein depolymerization rates

description: Depolymerization, the initial step in converting high-molecular-weight organic N (such as proteins) into amino acids and inorganic N, is a crucial driver of soil N availability and plant productivity. Despite its importance, the patterns and controlling factors of this process have remained largely unexplored. We constructed a global dataset of SON depolymerization, synthesizing 275 observations from 27 published papers.
DOI: 10.6084/m9.figshare.8080664.v1
title: Lake McConaughy Lake Dynamic Tracking Data

description: This data is long-term lake dynamic (surface elevation, area, and volume) derived from topographic datasets and Landsat imagery in Google Earth Engine.