cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25976434.v3
title: Supplementary Data for "<b>Mapper: fast and accurate sequence alignment via gapped x-mers</b>"

description: Evaluation Results:Suboptimal alignment rates:The folder "alignment_accuracy/" and "alignment_accuracy_ANI" contains the following:Alignment results for the same read compared across different aligners. Files ending with <code>withtag.txt</code> represent all alignment results, while files ending with <code>withtagclean.txt</code> exclude middle soft clips reported by BWA and Minimap2.A summary of suboptimal alignment rates.Potential causes of suboptimal alignments.Code to visualize the results (Figures 4, 5, S1, and S3) is available at https://github.com/caozhichongchong/Mapper_eva (Alignment_accuracy.ipynb and Alignment_accuracy_ANI.ipynb)Alignment inconsistency rate:The folder "alignment_consistency/" contains a summary of alignment inconsistency rates and suboptimal alignment rates.Code to visualize the results (Figures 6 and S4) is available at https://github.com/caozhichongchong/Mapper_eva (Alignment_consistency.ipynb)Speed:The folder "speed_evaluation" contains runtime and memory usage data for all aligners during library indexing and read alignment.Code to visualize the results (Figures 7, S5. and S6) can be found at https://github.com/caozhichongchong/Mapper_eva (Alignment_accuracy.ipynb)Alignment example for Figure S2: The folder "alignment_example" contains the code and SAM files supporting the alignment results for an example read shown in Figure S2.<br>
DOI: 10.15468/dl.4hcu2u
title: Occurrence Download

description: A dataset containing 7734 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hylotrupes bajulus (Linnaeus, 1758)"
 ]
}

 The dataset includes 7734 records from 300 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011699-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3k4qug
title: Occurrence Download

description: A dataset containing 1329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Monitoreo y caracterización de la comunidad hidrobiológica en el área de influencia de la Central Hidroeléctrica Calima"
 ]
}

 The dataset includes 1329 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041928-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzyqqp
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ptilinopus roseicapilla (R.Lesson, 1831)",
 "Country is Guam"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv9w6k
title: Occurrence Download

description: A dataset containing 546306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bonasa umbellus (Linnaeus, 1766)"
 ]
}

 The dataset includes 546306 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012511-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ww9lt3
title: Occurrence Download

description: A dataset containing 1432 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campylorhynchus megalopterus Lafresnaye, 1845"
 ]
}

 The dataset includes 1432 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tybzfa
title: Occurrence Download

description: A dataset containing 951 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria obtusa Lindl."
 ]
}

 The dataset includes 951 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004645-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y86fit
title: Occurrence Download

description: A dataset containing 443 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Schwanheimer Wald"
 ]
}

 The dataset includes 443 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wx8unt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Staphylea ternata (Nakai) Byng & Christenh."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041902-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuqxfh
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macrobenthos in surface sediments off Sylt collected during HEINCKE cruise HE278"
 ]
}

 The dataset includes 478 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krbpgv
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Dicranopteris pedata (Houtt.) Nakaike"
 ]
}

 The dataset includes 686 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028056-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.igcc5i
title: Occurrence Download

description: A dataset containing 9125 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de anfibios del Museo de Historia Natural de la Pontificia Universidad Javeriana"
 ]
}

 The dataset includes 9125 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjtvuj
title: Occurrence Download

description: A dataset containing 43203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is George Mason University, Ted R. Bradley Herbarium"
 ]
}

 The dataset includes 43203 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041906-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.09gqwa
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelydra acutirostris Peters, 1862"
 ]
}

 The dataset includes 79 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005610-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kjt6d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynorkis ochroglossa Schltr."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156868-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsnnad
title: Occurrence Download

description: A dataset containing 3429 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panax quinquefolius L."
 ]
}

 The dataset includes 3429 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbc4f7
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lithocarpus laetus Chun & C.C.Huang ex Y.C.Hsu & H.W.Jen"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041904-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apqc6h
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cactoblastis cactorum (Berg, 1885)"
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdfnl4
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera pardus saxicolor Pocock, 1927"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmsnsy
title: Occurrence Download

description: A dataset containing 1366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Escarabajos coprófagos, mariposas y hormigas de la Ecoreserva Apiay (Villavicencio, Meta) - Proyecto Ecoreservas"
 ]
}

 The dataset includes 1366 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041912-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uu28m7
title: Occurrence Download

description: A dataset containing 10047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GenusKey is Tilia L.",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Living Specimen, Fossil, Unknown evidence, Material sample)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED, Introduced, Uncertain)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 "Geometry POLYGON((140 15, 140 60, 68 60,\n 68 15, 140 15))"
 ]
}

 The dataset includes 10047 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016949-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhy7ez
title: Occurrence Download

description: A dataset containing 19886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cerastium pumilum Curtis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19886 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqweas
title: Occurrence Download

description: A dataset containing 27108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museu Paraense Emílio Goeldi - Ophidia Collection"
 ]
}

 The dataset includes 27108 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041922-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cettl5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is (Table 3) Distribution of calcareous nannofossils at DSDP Site 82-563 in the North Atlantic",
 "TaxonKey is Hayaster perplexus (Bramlette & W.R.Riedel) Buckry"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtq8k9
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimulopsis solmsii Schweinf."
 ]
}

 The dataset includes 404 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055704-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.99uqp6
title: Occurrence Download

description: A dataset containing 245 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gnathophis mystax (Delaroche, 1809)"
 ]
}

 The dataset includes 245 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012527-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uftnqr
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyrtophora citricola (Forsskål, 1775)"
 ]
}

 The dataset includes 333 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-171002173027117/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4cj29y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynorkis ×mirabile Hermans & P.J.Cribb"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156859-230224095556074/datasets/export for details.
DOI: 10.15468/dl.lbavo4
title: Occurrence Download

description: A dataset containing 1583555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "PublishingOrg is 4c415e40-1e21-11de-9e40-a0d6ecebb8bf",
 "InstitutionCode is s"
 ]
}

 The dataset includes 1583555 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005611-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bvs5v
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynorkis laxiflora (Blume) T.Durand & Schinz"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156840-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9ui8u
title: Occurrence Download

description: A dataset containing 171529 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum vulgare",
 "Geometry POLYGON((-11.953125 70.844672,-11.953125 36.031331,35.15625 36.031331,35.15625 70.844672,-11.953125 70.844672))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 171529 records from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nydwyb
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Vanellus gregarius (Pallas, 1771)",
 "Year 1990-2022"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156848-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrbrvq
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tuta absoluta (Meyrick, 1917)"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucapz3
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynorkis mellitula Toill.-Gen. & Bosser"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156856-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czisqi
title: Occurrence Download

description: A dataset containing 3942 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actaea rubra (Aiton) Willd."
 ]
}

 The dataset includes 3942 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9t5jz
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Habenaria polycarpa Hoehne"
 ]
}

 The dataset includes 48 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004651-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9sge4
title: Occurrence Download

description: A dataset containing 804 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hirundo atrocaerulea Sundevall, 1850"
 ]
}

 The dataset includes 804 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yag5y4
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptotes unicolor Barb.Rodr."
 ]
}

 The dataset includes 316 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004672-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev8hmm
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campylorhynchus yucatanicus (Hellmayr, 1934)"
 ]
}

 The dataset includes 498 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45z8hv
title: Occurrence Download

description: A dataset containing 48418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Naturalis Biodiversity Center (NL) - Porifera"
 ]
}

 The dataset includes 48418 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041909-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tlwira
title: Occurrence Download

description: A dataset containing 668 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Plantae",
 "TaxonKey is Agavaceae"
 ]
 },
 "Country is Mexico",
 "Geometry POLYGON((-110.742187 28.381735,-97.822265 25.403584,-98.261718 21.698265,-95.009765 17.476432,-96.503906 15.623036,-100.898437 17.476432,-104.326171 19.890723,-108.193359 25.403584,-110.742187 28.381735))",
 "BasisOfRecord is Literature Occurrence",
 "Year 2000-2015"
 ]
}

 The dataset includes 668 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md3uwf
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Betula L.",
 "Year 2010-2023"
 ]
}

 The dataset includes 425 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056725-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp477r
title: Occurrence Download

description: A dataset containing 196637 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Côte d’Ivoire"
 ]
}

 The dataset includes 196637 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005612-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wccgx
title: Occurrence Download

description: A dataset containing 12585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium jambos (L.) Alston"
 ]
}

 The dataset includes 12585 records from 510 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019150-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.