cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3557400.v1
title: Appendix C. Details of a simulation study to assess the statistical properties of the hierarchical model with multiple random effects and sparse observational sampling.

description: Details of a simulation study to assess the statistical properties of the hierarchical model with multiple random effects and sparse observational sampling.
DOI: 10.6084/m9.figshare.3557397
title: Appendix A. Spatial distributions of juvenile coho salmon in Bear Creek throughout the sockeye salmon spawning season.

description: Spatial distributions of juvenile coho salmon in Bear Creek throughout the sockeye salmon spawning season.
DOI: 10.6084/m9.figshare.3557397.v1
title: Appendix A. Spatial distributions of juvenile coho salmon in Bear Creek throughout the sockeye salmon spawning season.

description: Spatial distributions of juvenile coho salmon in Bear Creek throughout the sockeye salmon spawning season.
DOI: 10.6084/m9.figshare.3557394
title: Appendix B. Summary of model selection for analysis of fish growth.

description: Summary of model selection for analysis of fish growth.
DOI: 10.6084/m9.figshare.3557394.v1
title: Appendix B. Summary of model selection for analysis of fish growth.

description: Summary of model selection for analysis of fish growth.
DOI: 10.6084/m9.figshare.3557391
title: Appendix A. Statistical methods and detailed results of tests for sexual dimorphism in plant traits.

description: Statistical methods and detailed results of tests for sexual dimorphism in plant traits.
DOI: 10.6084/m9.figshare.3557391.v1
title: Appendix A. Statistical methods and detailed results of tests for sexual dimorphism in plant traits.

description: Statistical methods and detailed results of tests for sexual dimorphism in plant traits.
DOI: 10.6084/m9.figshare.3557388
title: Appendix B. Statistical methods and detailed results of tests for direct effects of nectary gluing on aphids.

description: Statistical methods and detailed results of tests for direct effects of nectary gluing on aphids.
DOI: 10.6084/m9.figshare.3557388.v1
title: Appendix B. Statistical methods and detailed results of tests for direct effects of nectary gluing on aphids.

description: Statistical methods and detailed results of tests for direct effects of nectary gluing on aphids.
DOI: 10.6084/m9.figshare.3557385
title: Appendix A. Supporting methods, including detailed descriptions of experimental methods and (supporting) statistical analyses, as well as three tables and six figures.

description: Supporting methods, including detailed descriptions of experimental methods and (supporting) statistical analyses, as well as three tables and six figures.
DOI: 10.6084/m9.figshare.3557385.v1
title: Appendix A. Supporting methods, including detailed descriptions of experimental methods and (supporting) statistical analyses, as well as three tables and six figures.

description: Supporting methods, including detailed descriptions of experimental methods and (supporting) statistical analyses, as well as three tables and six figures.
DOI: 10.6084/m9.figshare.3557382
title: Supplement 1. Simulation source code (R-script text file) underlying Fig. A5 in the Appendix, and example data set (Rdata file) to run with the code. The example data set is based on bee preferences calculated from different sets of cages, illustrating a "niche shift".

description: File List Fruend_Supplement_RSourceCode_SimulationPreferences.r (MD5: 2d88c4b2123f7c3a4282b91084df0f5e) Fruend_Supplement_ExampleData_forRscript.rdata (MD5: f31ceaf9b2de8520b0acb83114169a32) Description Fruend_Supplement_RSourceCode_SimulationPreferences.r Simulation source code (R-script text file) for analyses of preference / niche shifts, used for Figs. 4b and A5 in the article. The code can be run when the .rdata file also provided in this supplement is loaded into R. Simulates visitation data based on bee preferences calculated from different sets of cages, illustrating a ‘niche shift’. It simulates bee - flower visitation networks based on preferences calculated from cages with 1 and cages with &gt;1 bee species, respectively, and calculates plant species coverage for each simulation. See file for further comments and explanations (marked with # in the R language). Fruend_Supplement_ExampleData_forRscript.rdata This file provides example data (a subset of the original data) to run with the .r source code. In order to be loaded, it should be in the current working directory of R. It will be automatically loaded by running the code from the script.
DOI: 10.6084/m9.figshare.3557382.v1
title: Supplement 1. Simulation source code (R-script text file) underlying Fig. A5 in the Appendix, and example data set (Rdata file) to run with the code. The example data set is based on bee preferences calculated from different sets of cages, illustrating a "niche shift".

description: File List Fruend_Supplement_RSourceCode_SimulationPreferences.r (MD5: 2d88c4b2123f7c3a4282b91084df0f5e) Fruend_Supplement_ExampleData_forRscript.rdata (MD5: f31ceaf9b2de8520b0acb83114169a32) Description Fruend_Supplement_RSourceCode_SimulationPreferences.r Simulation source code (R-script text file) for analyses of preference / niche shifts, used for Figs. 4b and A5 in the article. The code can be run when the .rdata file also provided in this supplement is loaded into R. Simulates visitation data based on bee preferences calculated from different sets of cages, illustrating a ‘niche shift’. It simulates bee - flower visitation networks based on preferences calculated from cages with 1 and cages with &gt;1 bee species, respectively, and calculates plant species coverage for each simulation. See file for further comments and explanations (marked with # in the R language). Fruend_Supplement_ExampleData_forRscript.rdata This file provides example data (a subset of the original data) to run with the .r source code. In order to be loaded, it should be in the current working directory of R. It will be automatically loaded by running the code from the script.
DOI: 10.6084/m9.figshare.3557379
title: Appendix A. A table describing long-term vegetation measurements.

description: A table describing long-term vegetation measurements.
DOI: 10.6084/m9.figshare.3557379.v1
title: Appendix A. A table describing long-term vegetation measurements.

description: A table describing long-term vegetation measurements.
DOI: 10.6084/m9.figshare.3557376
title: Appendix B. A table presenting ANCOVA results that relate the changes in cover of dominant plant species/functional types and climate variables by data set.

description: A table presenting ANCOVA results that relate the changes in cover of dominant plant species/functional types and climate variables by data set.
DOI: 10.6084/m9.figshare.3557376.v1
title: Appendix B. A table presenting ANCOVA results that relate the changes in cover of dominant plant species/functional types and climate variables by data set.

description: A table presenting ANCOVA results that relate the changes in cover of dominant plant species/functional types and climate variables by data set.
DOI: 10.6084/m9.figshare.3557373
title: Appendix C. A table summarizing hierarchical partitioning results that explain the changes in cover of plant species/functional types with year of measurement and climate variables.

description: A table summarizing hierarchical partitioning results that explain the changes in cover of plant species/functional types with year of measurement and climate variables.
DOI: 10.6084/m9.figshare.3557373.v1
title: Appendix C. A table summarizing hierarchical partitioning results that explain the changes in cover of plant species/functional types with year of measurement and climate variables.

description: A table summarizing hierarchical partitioning results that explain the changes in cover of plant species/functional types with year of measurement and climate variables.
DOI: 10.6084/m9.figshare.3557370
title: Appendix D. A table summarizing the support for linear and nonlinear models that relate the changes in cover of dominant plant species/functional types and climate variables.

description: A table summarizing the support for linear and nonlinear models that relate the changes in cover of dominant plant species/functional types and climate variables.
DOI: 10.6084/m9.figshare.3557370.v1
title: Appendix D. A table summarizing the support for linear and nonlinear models that relate the changes in cover of dominant plant species/functional types and climate variables.

description: A table summarizing the support for linear and nonlinear models that relate the changes in cover of dominant plant species/functional types and climate variables.
DOI: 10.6084/m9.figshare.3557367
title: Appendix E. A table presenting long-term mean annual and seasonal precipitation and temperature of Chihuahuan Desert plant communities.

description: A table presenting long-term mean annual and seasonal precipitation and temperature of Chihuahuan Desert plant communities.
DOI: 10.6084/m9.figshare.3557367.v1
title: Appendix E. A table presenting long-term mean annual and seasonal precipitation and temperature of Chihuahuan Desert plant communities.

description: A table presenting long-term mean annual and seasonal precipitation and temperature of Chihuahuan Desert plant communities.
DOI: 10.6084/m9.figshare.3557364
title: Appendix A. Methodological details of plant propagation/set up, nutrient regime, and hyphal chemical analysis.

description: Methodological details of plant propagation/set up, nutrient regime, and hyphal chemical analysis.
DOI: 10.6084/m9.figshare.3557364.v1
title: Appendix A. Methodological details of plant propagation/set up, nutrient regime, and hyphal chemical analysis.

description: Methodological details of plant propagation/set up, nutrient regime, and hyphal chemical analysis.
DOI: 10.6084/m9.figshare.3557361
title: Appendix B. The qPCR methodology and probe design.

description: The qPCR methodology and probe design.
DOI: 10.6084/m9.figshare.3557361.v1
title: Appendix B. The qPCR methodology and probe design.

description: The qPCR methodology and probe design.
DOI: 10.6084/m9.figshare.3557358
title: Appendix C. Summary table of results and statistics.

description: Summary table of results and statistics.
DOI: 10.6084/m9.figshare.3557358.v1
title: Appendix C. Summary table of results and statistics.

description: Summary table of results and statistics.
DOI: 10.6084/m9.figshare.3557355
title: Appendix D. Comparison of ANOVA and GLM analyses for biomass measurements and secondary metabolites in roots and shoots.

description: Comparison of ANOVA and GLM analyses for biomass measurements and secondary metabolites in roots and shoots.
DOI: 10.6084/m9.figshare.3557355.v1
title: Appendix D. Comparison of ANOVA and GLM analyses for biomass measurements and secondary metabolites in roots and shoots.

description: Comparison of ANOVA and GLM analyses for biomass measurements and secondary metabolites in roots and shoots.
DOI: 10.6084/m9.figshare.3557352
title: Appendix E. Dry mass of fungal hyphae from "mixed" fungal treatment.

description: Dry mass of fungal hyphae from "mixed" fungal treatment.
DOI: 10.6084/m9.figshare.3557352.v1
title: Appendix E. Dry mass of fungal hyphae from "mixed" fungal treatment.

description: Dry mass of fungal hyphae from "mixed" fungal treatment.
DOI: 10.6084/m9.figshare.3557349
title: Appendix F. Choice experiment data testing catalpol palatability on Folsomia candida.

description: Choice experiment data testing catalpol palatability on Folsomia candida.
DOI: 10.6084/m9.figshare.3557349.v1
title: Appendix F. Choice experiment data testing catalpol palatability on Folsomia candida.

description: Choice experiment data testing catalpol palatability on Folsomia candida.
DOI: 10.6084/m9.figshare.3557346
title: Appendix A. Supplementary figures, including path diagrams and correlations between soil variables and precipitation.

description: Supplementary figures, including path diagrams and correlations between soil variables and precipitation.
DOI: 10.6084/m9.figshare.3557346.v1
title: Appendix A. Supplementary figures, including path diagrams and correlations between soil variables and precipitation.

description: Supplementary figures, including path diagrams and correlations between soil variables and precipitation.
DOI: 10.6084/m9.figshare.3557343
title: Appendix B. Supplementary tables, including correlations, means, and standard deviations of soil variables and plant functional traits.

description: Supplementary tables, including correlations, means, and standard deviations of soil variables and plant functional traits.
DOI: 10.6084/m9.figshare.3557343.v1
title: Appendix B. Supplementary tables, including correlations, means, and standard deviations of soil variables and plant functional traits.

description: Supplementary tables, including correlations, means, and standard deviations of soil variables and plant functional traits.
DOI: 10.6084/m9.figshare.3557340
title: Appendix A. Convergent succession in habitat variables.

description: Convergent succession in habitat variables.
DOI: 10.6084/m9.figshare.3557340.v1
title: Appendix A. Convergent succession in habitat variables.

description: Convergent succession in habitat variables.
DOI: 10.6084/m9.figshare.3557337
title: Appendix B. Species classifications by guild.

description: Species classifications by guild.
DOI: 10.6084/m9.figshare.3557337.v1
title: Appendix B. Species classifications by guild.

description: Species classifications by guild.
DOI: 10.6084/m9.figshare.3557334
title: Appendix A. A list of studies containing data sets used to assess local–regional richness relationships.

description: A list of studies containing data sets used to assess local–regional richness relationships.
DOI: 10.6084/m9.figshare.3557331
title: Appendix A. Potential biogeochemical pathways and mechanisms through which the four ecosystem processes could be directly and/or indirectly affected by bioturbator species and/or their interactions in this study.

description: Potential biogeochemical pathways and mechanisms through which the four ecosystem processes could be directly and/or indirectly affected by bioturbator species and/or their interactions in this study.
DOI: 10.6084/m9.figshare.3557331.v1
title: Appendix A. Potential biogeochemical pathways and mechanisms through which the four ecosystem processes could be directly and/or indirectly affected by bioturbator species and/or their interactions in this study.

description: Potential biogeochemical pathways and mechanisms through which the four ecosystem processes could be directly and/or indirectly affected by bioturbator species and/or their interactions in this study.
DOI: 10.6084/m9.figshare.3557328
title: Appendix B. Pearson’s correlations between the coefficients of determination (R²) of the species richness–ecosystem processes regressions and the F values for the nested effects of species composition with the nontransgressive overyielding (Dmax) and transgressive overyielding (DT) values for the four ecosystem processes analyzed in this study.

description: Pearson’s correlations between the coefficients of determination (R²) of the species richness–ecosystem processes regressions and the F values for the nested effects of species composition with the nontransgressive overyielding (Dmax) and transgressive overyielding (DT) values for the four ecosystem processes analyzed in this study.
DOI: 10.6084/m9.figshare.3557328.v1
title: Appendix B. Pearson’s correlations between the coefficients of determination (R²) of the species richness–ecosystem processes regressions and the F values for the nested effects of species composition with the nontransgressive overyielding (Dmax) and transgressive overyielding (DT) values for the four ecosystem processes analyzed in this study.

description: Pearson’s correlations between the coefficients of determination (R²) of the species richness–ecosystem processes regressions and the F values for the nested effects of species composition with the nontransgressive overyielding (Dmax) and transgressive overyielding (DT) values for the four ecosystem processes analyzed in this study.
DOI: 10.6084/m9.figshare.3557325
title: Appendix A. Parameter estimations and maximum-likelihood values for experiments depicted in Figs. 1–3.

description: Parameter estimations and maximum-likelihood values for experiments depicted in Figs. 1–3.
DOI: 10.6084/m9.figshare.3557322
title: Appendix A. PCR reaction conditions and analysis.

description: PCR reaction conditions and analysis.
DOI: 10.6084/m9.figshare.3557319
title: Appendix B. Methodology for measuring genetic diversity of Macrocystis pyrifera.

description: Methodology for measuring genetic diversity of Macrocystis pyrifera.
DOI: 10.6084/m9.figshare.3557319.v1
title: Appendix B. Methodology for measuring genetic diversity of Macrocystis pyrifera.

description: Methodology for measuring genetic diversity of Macrocystis pyrifera.
DOI: 10.6084/m9.figshare.3557316
title: Appendix C. Kelp recruitment results.

description: Kelp recruitment results.
DOI: 10.6084/m9.figshare.3557316.v1
title: Appendix C. Kelp recruitment results.

description: Kelp recruitment results.
DOI: 10.6084/m9.figshare.3557313
title: Appendix D. Genetic diversity in Macrocystis pyrifera.

description: Genetic diversity in Macrocystis pyrifera.
DOI: 10.6084/m9.figshare.3557313.v1
title: Appendix D. Genetic diversity in Macrocystis pyrifera.

description: Genetic diversity in Macrocystis pyrifera.
DOI: 10.6084/m9.figshare.3557310
title: Appendix A. Tables showing richness and biomass (grams wet tissue mass) of species in each experimental assemblage.

description: Tables showing richness and biomass (grams wet tissue mass) of species in each experimental assemblage.
DOI: 10.6084/m9.figshare.3557307
title: Appendix A. Photographs of the study organisms and experimental plots.

description: Photographs of the study organisms and experimental plots.
DOI: 10.6084/m9.figshare.3557307.v1
title: Appendix A. Photographs of the study organisms and experimental plots.

description: Photographs of the study organisms and experimental plots.
DOI: 10.6084/m9.figshare.3557304
title: Appendix B. ANOVAs examining interacting effects of pneumatophore density and height on algal and epifaunal colonization.

description: ANOVAs examining interacting effects of pneumatophore density and height on algal and epifaunal colonization.
DOI: 10.6084/m9.figshare.3557304.v1
title: Appendix B. ANOVAs examining interacting effects of pneumatophore density and height on algal and epifaunal colonization.

description: ANOVAs examining interacting effects of pneumatophore density and height on algal and epifaunal colonization.
DOI: 10.6084/m9.figshare.3557301
title: Appendix C. ANOVAs examining interacting effects of pneumatophore density and algal morphology on algal retention by experimental plots, and the colonization of plots by epifaunal mollusks.

description: ANOVAs examining interacting effects of pneumatophore density and algal morphology on algal retention by experimental plots, and the colonization of plots by epifaunal mollusks.
DOI: 10.6084/m9.figshare.3557298
title: Appendix A. Analysis of detritus remaining at the end of the experiment.

description: Analysis of detritus remaining at the end of the experiment.
DOI: 10.6084/m9.figshare.3557298.v1
title: Appendix A. Analysis of detritus remaining at the end of the experiment.

description: Analysis of detritus remaining at the end of the experiment.
DOI: 10.6084/m9.figshare.3557295
title: Appendix B. Length–mass regression equations used to calculate invertebrate biomass.

description: Length–mass regression equations used to calculate invertebrate biomass.
DOI: 10.6084/m9.figshare.3557295.v1
title: Appendix B. Length–mass regression equations used to calculate invertebrate biomass.

description: Length–mass regression equations used to calculate invertebrate biomass.
DOI: 10.6084/m9.figshare.3557292
title: Appendix C. Analysis of sticklebacks found in cages at the end of the experiment.

description: Analysis of sticklebacks found in cages at the end of the experiment.
DOI: 10.6084/m9.figshare.3557292.v1
title: Appendix C. Analysis of sticklebacks found in cages at the end of the experiment.

description: Analysis of sticklebacks found in cages at the end of the experiment.
DOI: 10.6084/m9.figshare.3557289
title: Appendix D. Redundancy analysis (RDA) on community composition in experimental cages.

description: Redundancy analysis (RDA) on community composition in experimental cages.
DOI: 10.6084/m9.figshare.3557289.v1
title: Appendix D. Redundancy analysis (RDA) on community composition in experimental cages.

description: Redundancy analysis (RDA) on community composition in experimental cages.
DOI: 10.6084/m9.figshare.3557286
title: Appendix A. Imputation of the response for the NWS data set.

description: Imputation of the response for the NWS data set.
DOI: 10.6084/m9.figshare.3557286.v1
title: Appendix A. Imputation of the response for the NWS data set.

description: Imputation of the response for the NWS data set.
DOI: 10.6084/m9.figshare.3557283
title: Appendix B. Additional results for comparison between species archetype models (SAMs) and separate species distribution models (SDMs).

description: Additional results for comparison between species archetype models (SAMs) and separate species distribution models (SDMs).
DOI: 10.6084/m9.figshare.3557283.v1
title: Appendix B. Additional results for comparison between species archetype models (SAMs) and separate species distribution models (SDMs).

description: Additional results for comparison between species archetype models (SAMs) and separate species distribution models (SDMs).
DOI: 10.6084/m9.figshare.3557280
title: Appendix C. Comparing the performance of SAMs and separate species generalized additive models (GAMs).

description: Comparing the performance of SAMs and separate species generalized additive models (GAMs).
DOI: 10.6084/m9.figshare.3557280.v1
title: Appendix C. Comparing the performance of SAMs and separate species generalized additive models (GAMs).

description: Comparing the performance of SAMs and separate species generalized additive models (GAMs).
DOI: 10.6084/m9.figshare.3557277
title: Supplement 1. The R codes that were used for simulating random, moderately aggregated, and highly aggregated distributions of tree species shown in Fig. 2.

description: File List PointPattern.r (MD5: d2d4e64959a48dff9d7e6e0d538384bc) Description The R codes that were used for simulating random, moderately aggregated, and highly aggregated distributions of tree species shown in Fig. 2. The Thomas point process in function “rThomas” in R package spatstat was used to generate the spatial distributions. The abundance of each species in the three simulated forests was the same as the observed abundance in the Pasoh forest in Malaysia. There were 814 species and total of 323 262 stems. The Pasoh abundance data is enclosed below at the end of the program.
DOI: 10.6084/m9.figshare.3557277.v1
title: Supplement 1. The R codes that were used for simulating random, moderately aggregated, and highly aggregated distributions of tree species shown in Fig. 2.

description: File List PointPattern.r (MD5: d2d4e64959a48dff9d7e6e0d538384bc) Description The R codes that were used for simulating random, moderately aggregated, and highly aggregated distributions of tree species shown in Fig. 2. The Thomas point process in function “rThomas” in R package spatstat was used to generate the spatial distributions. The abundance of each species in the three simulated forests was the same as the observed abundance in the Pasoh forest in Malaysia. There were 814 species and total of 323 262 stems. The Pasoh abundance data is enclosed below at the end of the program.