cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wjtd5r
title: Occurrence Download

description: A dataset containing 83192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.72359 48.54664,2.83683 48.54664,2.83683 49.13724,1.72359 49.13724,1.72359 48.54664))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arthropoda",
 "Year 2015-2022"
 ]
}

 The dataset includes 83192 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0145760-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111330587
title: Wycliffite New Testament, MS.000340

description: [Text Description:] New Testament translation by John Wycliffe ❧ [Text or Publication Number Note:] MS.000340 ❧ [Medium:] Parchment ❧ [Script Note:] Gothic ❧ [Physical Object Description:] 218 folios; 9 x 6.1 x 3.1 in. (22.9 x 15.5 x 8 cm) ❧ [Physical Object Note:] Vellum with ink. Two columns of 36 lines, visible ruler lines. Leather binding with brass corner pieces and center bosses, letters "A C" stamped on either side. ❧ [Physical Object Note:] Illuminated initials in burnished gold at beginning of each book of the New Testament.
DOI: 10.15468/dl.ygu9ge
title: Occurrence Download

description: A dataset containing 9795335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is 2015",
 "Month is April",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 9795335 records from 1359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036294-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dskxfh
title: Occurrence Download

description: A dataset containing 2876 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Phylloscartes oustaleti (P.L.Sclater, 1887)"
 ]
}

 The dataset includes 2876 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057367-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec3zt6
title: Occurrence Download

description: A dataset containing 7542 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera suffrutescens (Ser.) W.L.Wagner & Hoch"
 ]
}

 The dataset includes 7542 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001345-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vuqua7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidophthalmus siriboia Felder & de Almeida Rodrigues, 1993",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057370-240229165702484/datasets/export for details.
DOI: 10.15468/dl.rhjyoe
title: Occurrence Download

description: A dataset containing 21160 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Cirsium vulgare subsp. vulgare"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21160 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039329-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xw3864
title: Occurrence Download

description: A dataset containing 32179822 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 32179822 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001756-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aztnum
title: Occurrence Download

description: A dataset containing 638967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Betula pendula Roth"
 ]
}

 The dataset includes 638967 records from 2141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014092-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17314592
title: (14)-Strobl2025A-DS0026 – SLICE-1 – Tribolium castaneum AGOC{ATub'Lamin°NB-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy – Part 2/2

description: (14)-Strobl2025A-DS0026 – SLICE-1 – Tribolium castaneum AGOC{ATub'Lamin°NB-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy – Part 2/2
DOI: 10.15468/dl.z66qy7
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Andira macrothyrsa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 123 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005643-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zydvm
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Country is Nigeria",
 "TaxonKey is Khaya senegalensis (Desv.) A.Juss."
 ]
}

 The dataset includes 77 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000651-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r9nb8w
title: Occurrence Download

description: A dataset containing 196144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 196144 records from 735 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000640-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9s24cc
title: Occurrence Download

description: A dataset containing 22435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Centaurea calcitrapa L."
 ]
}

 The dataset includes 22435 records from 486 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000654-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wkp3h
title: Occurrence Download

description: A dataset containing 7499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "PublishingCountry is Kenya",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 7499 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000655-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7y5e3
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "TaxonKey is Stygiopontius Humes, 1987"
 ]
}

 The dataset includes 101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000656-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3acmk8
title: Occurrence Download

description: A dataset listing the 283 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.28_2",
 "TaxonKey is Squamata"
 ]
}

 The dataset's 283 records were derived from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000653-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dde9pc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Chrysomallon C.Chen, Linse, Copley & A.D.Rogers, 2015"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000657-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/uul7qh
title: Portfolio Optimization – Code for Master’s Thesis

description: The dataset includes a Jupyter Notebook (Portfolio_Optimization.ipynb) that implements portfolio optimization techniques using Python. The code covers data generation, model implementation, and result visualization. This dataset supports the second chapter of my Master's thesis at the University of Göttingen.
DOI: 10.25625/uul7qh/sh1xrw
title: Portfolio_Optimization.ipynb

description: :unav
DOI: 10.6084/m9.figshare.27961089
title: Pan-genome data files

description: Pan-genome data files generated from gut-derived MAGs and isolate genomes belonging to Klebsiella pneumoniae.
DOI: 10.57967/hf/4940
title: Syi
DOI: 10.6084/m9.figshare.28592705
title: COVID-19 vaccination coverage and acceptability

description: Mexico faced significant obstacles in achieving COVID-19 vaccination coverage for migrants, particularly irregular migrants, asylum seekers, and refugees. In other contexts, migrant vaccination coverage has been influenced by prioritization policies, identification requirements, and various sociodemographic, migratory, and health factors, though these had not been fully explored in Mexico.This study analyzed factors associated with COVID-19 vaccine coverage among migrants in transit through Mexico. From November 2021 to May 2022, a convenience sample of 2,355 migrants across six shelters was surveyed on vaccination history and acceptance, as well as sociodemographic, migration, and health characteristics. To complement the survey, semi-structured interviews with migrants and key informants explored access barriers and attitudes toward COVID-19 vaccination.Of respondents, 61.1% reported receiving at least one COVID-19 vaccine dose, with 67.6% vaccinated prior to arriving in Mexico. Factors associated with vaccination included education level, country of prior residence, history of COVID-19 infection (OR = 1.370 [95% CI, 1.081–1.737]), and COVID-19 testing history (OR = 4.790 [95% CI, 3.825–5.999]). Among unvaccinated respondents, 81.4% expressed willingness to vaccinate, often viewing it as “protection against complications or death” and a “requirement for movement between countries.” Among respondents, 7.2% expressed concerns related to misinformation.Findings suggest that while many migrants were vaccinated before arrival, inconsistent ID requirements and age-based restrictions impeded coverage within Mexico. Addressing misinformation and aligning local practices with national policies could improve vaccine access for this population.
DOI: 10.6084/m9.figshare.28592705.v1
title: COVID-19 vaccination coverage and acceptability

description: Mexico faced significant obstacles in achieving COVID-19 vaccination coverage for migrants, particularly irregular migrants, asylum seekers, and refugees. In other contexts, migrant vaccination coverage has been influenced by prioritization policies, identification requirements, and various sociodemographic, migratory, and health factors, though these had not been fully explored in Mexico.This study analyzed factors associated with COVID-19 vaccine coverage among migrants in transit through Mexico. From November 2021 to May 2022, a convenience sample of 2,355 migrants across six shelters was surveyed on vaccination history and acceptance, as well as sociodemographic, migration, and health characteristics. To complement the survey, semi-structured interviews with migrants and key informants explored access barriers and attitudes toward COVID-19 vaccination.Of respondents, 61.1% reported receiving at least one COVID-19 vaccine dose, with 67.6% vaccinated prior to arriving in Mexico. Factors associated with vaccination included education level, country of prior residence, history of COVID-19 infection (OR = 1.370 [95% CI, 1.081–1.737]), and COVID-19 testing history (OR = 4.790 [95% CI, 3.825–5.999]). Among unvaccinated respondents, 81.4% expressed willingness to vaccinate, often viewing it as “protection against complications or death” and a “requirement for movement between countries.” Among respondents, 7.2% expressed concerns related to misinformation.Findings suggest that while many migrants were vaccinated before arrival, inconsistent ID requirements and age-based restrictions impeded coverage within Mexico. Addressing misinformation and aligning local practices with national policies could improve vaccine access for this population.
DOI: 10.5281/zenodo.15081923
title: HaploC resource data

description: This repository contains the phased HiC and related data reported in Liu et al. (submitted).Please refer to the Supplementary methods of the paper for an extensive description.Decompress the .tar.gz archive to find 4 main subfolders including:Supp1: Haplotypes calls (.haps format)Supp2: phased .hic maps (.maternal and .paternal, .hic format)Supp3: CNV callsSupp4: Calder subcompartment calls (unphased, maternal, paternal)
DOI: 10.15468/dl.rryry2
title: Occurrence Download

description: A dataset containing 796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.28_2",
 "TaxonKey is Crocodylia"
 ]
}

 The dataset includes 796 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000658-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28562855
title: Raw data gross Pi fluxes and soil analyses

description: Phosphorus (P) is crucial for ecosystem functioning, yet primary productivity in many tropical regrowth forests on highly weathered soils is assumed to be limited by P availability. Here, we used an isotope pool dilution (IPD) technique to quantify gross inorganic P (Pi) transformation rates along secondary forest succession trajectories in the central Congo Basin to assess land-use change effects on soil P cycling.We considered gross Pi desorption and gross organic P (P<sub>O</sub>) mineralization together as a joint influx of Pi into the bicarbonate-extractable Pi pool (BIC-extractable Pi; P<sub>BIC</sub>), termed “gross mobilization”, while gross Pi sorption and gross microbial Pi uptake were treated as a joint efflux of Pi from the P<sub>BIC</sub> pool, referred to as “gross immobilization”. Average gross fluxes ranged between 0.11 and 0.26 µg P g<sup>-1</sup> d<sup>-1</sup>, which is at the lower end of globally observed soil gross P cycling rates. No significant trends in soil BIC-extractable Pi or Pi fluxes were found along secondary forest succession trajectories, and P<sub>BIC</sub> showed a rapid turnover time (ca. 2 days). Environmental controls on gross Pi transformation rates varied between sites with the highest gross rates noted for sandy soils, while heavier, clayey soils resulted in lower rates, as well as lower P<sub>BIC</sub>. Significant predictors for gross Pi fluxes included variables related to microbial activity (tracer recovery in microbial biomass and microbial biomass carbon), as well as the P<sub>BIC</sub> pool size and dissolved organic carbon, reflecting both biotic and abiotic controls.These findings highlight the importance of microbial and physicochemical characteristics for P cycling in tropical forests soils, especially in landscapes impacted by slash-and-burn agriculture. Furthermore, enhancing representation of soil P cycling in global dynamic vegetation models can improve predictions of resilience of tropical forest.
DOI: 10.6084/m9.figshare.28661588
title: <b>Single-dose VSV-Sudan virus vaccine protects macaques from lethal Sudan virus infection within one week</b>

description: Uganda’s most recent Sudan virus (SUDV) outbreak created a public health emergency in Uganda and the Eastern Africa region. Currently, there are licensed countermeasures for Ebola virus (EBOV); however, there are no licensed vaccines or therapeutics against SUDV.We developed a vesicular stomatitis virus (VSV)-based vaccine expressing the SUDV glycoprotein as the viral antigen. Cynomolgus macaques were vaccinated with a single intramuscular (IM) dose of VSV-SUDV either one month or one week prior to SUDV challenge. A third group was vaccinated with a single IM dose of VSV-EBOV one month prior to SUDV challenge to assess its cross-protective potential since SUDV and EBOV are related filoviruses. All vaccinated nonhuman primates (NHPs) developed antigen-specific IgG within 2 weeks of vaccination, including cross-reactive responses as demonstrated by ELISA. After IM challenge with a lethal dose of SUDV, all VSV-SUDV-vaccinated NHPs were uniformly protected from disease. In contrast, the VSV-EBOV-vaccinated and control NHPs succumbed to disease between day 5 and 7 after challenge presenting with classical signs of Sudan virus disease associated with high titer viremia, high viral organ load, dysregulated cytokine profiles and typical pathological changes. The humoral immune response in the NHPs vaccinated with VSV-SUDV one month before challenge resulted in a profound and sustained antibody response with a diverse functionality profile which was not observed to the same extend in NHPs vaccinated one week before challenge.Taken together, we demonstrated that VSV-EBOV provided no relevant protection against SUDV infection in NHPs highlighting the need for species-specific vaccines against filoviruses. Furthermore, our data show that VSV-SUDV is a fast-acting single-dose vaccine ideal for use in future outbreaks.
DOI: 10.6084/m9.figshare.28661588.v1
title: <b>Single-dose VSV-Sudan virus vaccine protects macaques from lethal Sudan virus infection within one week</b>

description: Uganda’s most recent Sudan virus (SUDV) outbreak created a public health emergency in Uganda and the Eastern Africa region. Currently, there are licensed countermeasures for Ebola virus (EBOV); however, there are no licensed vaccines or therapeutics against SUDV.We developed a vesicular stomatitis virus (VSV)-based vaccine expressing the SUDV glycoprotein as the viral antigen. Cynomolgus macaques were vaccinated with a single intramuscular (IM) dose of VSV-SUDV either one month or one week prior to SUDV challenge. A third group was vaccinated with a single IM dose of VSV-EBOV one month prior to SUDV challenge to assess its cross-protective potential since SUDV and EBOV are related filoviruses. All vaccinated nonhuman primates (NHPs) developed antigen-specific IgG within 2 weeks of vaccination, including cross-reactive responses as demonstrated by ELISA. After IM challenge with a lethal dose of SUDV, all VSV-SUDV-vaccinated NHPs were uniformly protected from disease. In contrast, the VSV-EBOV-vaccinated and control NHPs succumbed to disease between day 5 and 7 after challenge presenting with classical signs of Sudan virus disease associated with high titer viremia, high viral organ load, dysregulated cytokine profiles and typical pathological changes. The humoral immune response in the NHPs vaccinated with VSV-SUDV one month before challenge resulted in a profound and sustained antibody response with a diverse functionality profile which was not observed to the same extend in NHPs vaccinated one week before challenge.Taken together, we demonstrated that VSV-EBOV provided no relevant protection against SUDV infection in NHPs highlighting the need for species-specific vaccines against filoviruses. Furthermore, our data show that VSV-SUDV is a fast-acting single-dose vaccine ideal for use in future outbreaks.
DOI: 10.5281/zenodo.15084543
title: Replication data for: "Color and near-infrared reflectance covary in distinct ways across taxa and time" by Goldenberg et al.

description: This repository contains the data and code used to produce the manuscrpit "Color and near-infrared reflectance covary in distinct ways across taxa and time" by Goldenberg et al.

The article is under review

It contains:



1) "Comparative_RScript.Rmd": R-script to reproduce our work

2) "total_dataset.csv": Our full dataset

3) "crocodylia_species.nwk": crocodyl phylogeny from TimeTree.org

4) "insect_species_jon.nwk": insect phylogeny from TimeTree.org

5) "mammals.tree": mammal phylogeny from Alvarez et al. 2022

6) "AppendixS3.txt": squamates phylogeny from Zheng and Wiens (2016)

7) "Phasar.nwk": phasmid and spider phylogeny from TImeTree.org

8) "testudines_species.nwk": testudines phylogeny from TimeTree.org
DOI: 10.57967/hf/4941
title: Syi
DOI: 10.15468/dl.rpdhy3
title: Occurrence Download

description: A dataset containing 663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is CAS Invertebrate Zoology (IZ)",
 "TaxonKey is Pycnogonida"
 ]
}

 The dataset includes 663 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000660-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3kf7y
title: Occurrence Download

description: A dataset containing 1994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 396d5f30-dea9-11db-8ab4-b8a03c50a862",
 "TaxonKey is Pycnogonida"
 ]
}

 The dataset includes 1994 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000661-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.