cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2061414
title: Metagenomic evidence of the prevalence and distribution patterns of antimicrobial resistance genes in dairy agroecosystems

description: Antimicrobial resistance (AR) is a global problem with serious implications for public health. AR genes are frequently detected on animal farms but little is known about their origin and distribution patterns. We hypothesized that AR genes can transfer from animal feces to the environment via manure and to this end we characterized and compared the resistomes (collections of AR genes) of animal feces, manure, and soil samples collected from five dairy farms using a metagenomics approach. Resistomes constituted only up to 1% of the total gene content, but were variable by sector and also farm. Broadly, the identified AR genes were associated with18 antibiotic resistances classes across all samples; however, the most abundant genes were those encoding for multi-drug resistance (MDR) efflux systems (44.75%), followed by resistance to vancomycin (12.48%), tetracycline (10.52%), bacitracin (10.43%), beta-lactam resistance (7.12%) and MLS efflux pump (6.86%) antimicrobials. The AR gene profiles were variable between farms; farm 09 was categorized as a high risk farm as a greater proportion of AR genes were common to at least three sectors, suggesting possible transfer of organism(s)/horizontal transfer of AR genes. Taxonomic characterization of AR genes revealed that a majority of AR genes were associated with the phylum Proteobacteria. Nonetheless, there were several members of Bacteroidetes, particularly Bacteroides genus and several lineages from Firmicutes that carried similar AR genes in different sectors, suggesting a strong potential for horizontal transfer of AR genes between unrelated bacterial hosts in different sectors of the farms. Further studies are required to affirm the horizontal gene transfer mechanisms between microbiomes of different sectors in animal agroecosystems.
DOI: 10.6084/m9.figshare.2061405
title: The openings of the pterygopalatine fossa

description: <i>The openings between the Pterygopalatine fossa (PPF) and other regions and the nerve and vessels passing through.</i><br>
DOI: 10.6084/m9.figshare.2061501.v1
title: Effectiveness and sustainability of household water treatment use in Western Kenya

description: Effectiveness and sustainability of household water treatment use in Western Kenya: a household based cross sectional survey
DOI: 10.6084/m9.figshare.2061414.v2
title: Metagenomic evidence of the prevalence and distribution patterns of antimicrobial resistance genes in dairy agroecosystems

description: Antimicrobial resistance (AR) is a global problem with serious implications for public health. AR genes are frequently detected on animal farms but little is known about their origin and distribution patterns. We hypothesized that AR genes can transfer from animal feces to the environment via manure and to this end we characterized and compared the resistomes (collections of AR genes) of animal feces, manure, and soil samples collected from five dairy farms using a metagenomics approach. Resistomes constituted only up to 1% of the total gene content, but were variable by sector and also farm. Broadly, the identified AR genes were associated with18 antibiotic resistances classes across all samples; however, the most abundant genes were those encoding for multi-drug resistance (MDR) efflux systems (44.75%), followed by resistance to vancomycin (12.48%), tetracycline (10.52%), bacitracin (10.43%), beta-lactam resistance (7.12%) and MLS efflux pump (6.86%) antimicrobials. The AR gene profiles were variable between farms; farm 09 was categorized as a high risk farm as a greater proportion of AR genes were common to at least three sectors, suggesting possible transfer of organism(s)/horizontal transfer of AR genes. Taxonomic characterization of AR genes revealed that a majority of AR genes were associated with the phylum Proteobacteria. Nonetheless, there were several members of Bacteroidetes, particularly Bacteroides genus and several lineages from Firmicutes that carried similar AR genes in different sectors, suggesting a strong potential for horizontal transfer of AR genes between unrelated bacterial hosts in different sectors of the farms. Further studies are required to affirm the horizontal gene transfer mechanisms between microbiomes of different sectors in animal agroecosystems.
DOI: 10.6084/m9.figshare.2061414.v1
title: Metagenomic evidence of the prevalence and distribution patterns of antimicrobial resistance genes in dairy agroecosystems

description: Antimicrobial resistance (AR) is a global problem with serious implications for public health. AR genes are frequently detected on animal farms but little is known about their origin and distribution patterns. We hypothesized that AR genes can transfer from animal feces to the environment via manure and to this end we characterized and compared the resistomes (collections of AR genes) of animal feces, manure, and soil samples collected from five dairy farms using a metagenomics approach. Resistomes constituted only up to 1% of the total gene content, but were variable by sector and also farm. Broadly, the identified AR genes were associated with18 antibiotic resistances classes across all samples; however, the most abundant genes were those encoding for multi-drug resistance (MDR) efflux systems (44.75%), followed by resistance to vancomycin (12.48%), tetracycline (10.52%), bacitracin (10.43%), beta-lactam resistance (7.12%) and MLS efflux pump (6.86%) antimicrobials. The AR gene profiles were variable between farms; farm 09 was categorized as a high risk farm as a greater proportion of AR genes were common to at least three sectors, suggesting possible transfer of organism(s)/horizontal transfer of AR genes. Taxonomic characterization of AR genes revealed that a majority of AR genes were associated with the phylum Proteobacteria. Nonetheless, there were several members of Bacteroidetes, particularly Bacteroides genus and several lineages from Firmicutes that carried similar AR genes in different sectors, suggesting a strong potential for horizontal transfer of AR genes between unrelated bacterial hosts in different sectors of the farms. Further studies are required to affirm the horizontal gene transfer mechanisms between microbiomes of different sectors in animal agroecosystems.
DOI: 10.6084/m9.figshare.2061327
title: Gill et al 2015 Trial II processed subset

description: <br>A processed subset of zebra finch calling data from:<br><br> Gill LF, Goymann W, Ter Maat A, Gahr M.<br> Patterns of call communication between group-housed zebra finches change during the breeding cycle.<br> eLife. 2015;4<br> http://dx.doi.org/10.7554/eLife.07770<br><br>Each of the "gill_rawfile*" CSV files contains timestamped event data in the following format:<br><br> starttime,duration,channel<br><br>Where the start time is in seconds, the duration is not used in this dataset and so it is fixed at 0 so that the data format is compatible with the zf4f dataset. The "channel" simply indexes the individual who calls (for the "*ind" files), or for the "*type" files it combines who calls with which call they produce. See the "key" CSV files for lookup tables that help you to understand what the channels mean.<br><br>Note that the sessions are numbered 1,4,5,6 as given in these CSV filenames. These actually correspond to sessions 1,7,11,18 as given in the Gill et al paper; in other words these data files correspond to the same days as plotted in their Fig 5A for "Trial II".<br><br>
DOI: 10.6084/m9.figshare.2061291
title: RT for processing personally familiar, famous and unfamiliar faces

description: Reaction time data for correct responses.<br>Data are organised as follows:<br>The first part of a column name represents trials that were incongruent (I) or congruent (C).<br>The second part of a column name represents the identity of the target face shown, famous (Fam), personally familiar (Friend) or unfamiliar (Unfam).<br>The third part of a column name represents the target view, frontal (Fr), profile (Pr) or three-quarters view (Q).<br>For example, the column labeled IFamPr refers to RT data in response to a famous target face that was incongruent in identity to the prime face and presented in profile view.
DOI: 10.6084/m9.figshare.2061327.v1
title: Gill et al 2015 Trial II processed subset

description: <br>A processed subset of zebra finch calling data from:<br><br> Gill LF, Goymann W, Ter Maat A, Gahr M.<br> Patterns of call communication between group-housed zebra finches change during the breeding cycle.<br> eLife. 2015;4<br> http://dx.doi.org/10.7554/eLife.07770<br><br>Each of the "gill_rawfile*" CSV files contains timestamped event data in the following format:<br><br> starttime,duration,channel<br><br>Where the start time is in seconds, the duration is not used in this dataset and so it is fixed at 0 so that the data format is compatible with the zf4f dataset. The "channel" simply indexes the individual who calls (for the "*ind" files), or for the "*type" files it combines who calls with which call they produce. See the "key" CSV files for lookup tables that help you to understand what the channels mean.<br><br>Note that the sessions are numbered 1,4,5,6 as given in these CSV filenames. These actually correspond to sessions 1,7,11,18 as given in the Gill et al paper; in other words these data files correspond to the same days as plotted in their Fig 5A for "Trial II".<br><br>
DOI: 10.6084/m9.figshare.2061405.v1
title: The Pterygopalatine fossa

description: <i>The openings between the Pterygopalatine fossa (PPF) and other regions and the nerve and vessels passing through.</i><i>DOI: </i>10.6084/m9.figshare.2061405
DOI: 10.6084/m9.figshare.2061219
title: Psychological differences toward pedestrian red light crossing between university students and their peers

description: Abstract Based on our site investigation conducted in 2013, we found that the pedestrian red light crossing at the midblock connecting the campus of Southwest University and living area was low, where most of pedestrians are university students and staff. This paper reports a supplementary work applying the Theory of Planned Behaviour (TPB) to identify any psychological differences toward pedestrian red light crossing between university students and their peers. Three social groups participated in the investigation. The first group is the university students in Grade one (Group 1), the other two groups are their previous senior middle school classmates who are now working full time (Group 2) or who are now out of work and school (Group 3). The statistical results indicated The TPB components accounted for 42.9%, 55.3% and 55.4% of the variance of red signal crossing intention for Group 1, Group 2 and Group 3 in the depicted road crossing scenario. The data also showed that there are obvious differences among the participants’ responses to “refrain from crossing” between university students and others, and the subsequent regression analysis revealed the ability to “refrain from crossing” played the most important role in the intention of red light crossing in the depicted scenario. <br>
DOI: 10.6084/m9.figshare.2061303
title: Lefevre and Cox: Delayed instructional feedback may be more effective, but is this contrary to learners’ preferences?

description: This file contains the quantitative data that forms the basis of the paper "Delayed instructional feedback may be more effective, but is this contrary to learners’ preferences?". <br>Note that permission was not obtained from research subjects to share the qualitative data gathered during the research.
DOI: 10.6084/m9.figshare.2061303.v1
title: Lefevre and Cox: Delayed instructional feedback may be more effective, but is this contrary to learners’ preferences?

description: This file contains the quantitative data that forms the basis of the paper "Delayed instructional feedback may be more effective, but is this contrary to learners’ preferences?". <br>Note that permission was not obtained from research subjects to share the qualitative data gathered during the research.
DOI: 10.6084/m9.figshare.2061156
title: Data from: Discharge patterning in rat olfactory bulb mitral cells in vivo

description: Here we present a detailed statistical analysis of the discharge characteristics of mitral cells of the main olfactory bulb of urethane-anesthetized rats. Neurons were recorded from the mitral cell layer, and antidromically identified by stimuli applied to the lateral olfactory tract. All mitral cells displayed repeated, prolonged bursts of action potentials typically lasting &gt;100s and separated by similarly long intervals; about half were completely silent between bursts. No such bursting was observed in non-mitral cells recorded in close proximity to mitral cells. Bursts were asynchronous amongst even adjacent mitral cells. The intraburst activity of most mitral cells showed strong entrainment to the spontaneous respiratory rhythm; similar entrainment was seen in some, but not all non-mitral cells. All mitral cells displayed a peak of excitability at ~25 ms after spikes, as reflected by a peak in the interspike interval distribution and in the corresponding hazard function. About half also showed a peak at about 6 ms, reflecting the common occurrence of doublet spikes. Non-mitral cells showed no such doublet spikes. Bursts typically increased in intensity over the first 20-30 s of a burst, during which time doublets were rare or absent. After 20-30s (in cells that exhibited doublets) doublets occurred frequently for as long as the burst persisted, in trains of up to 10 doublets. The last doublet was followed by an extended relative refractory period the duration of which was independent of train length. In cells that were excited by application of a particular odor, responsiveness was apparently greater during silent periods between bursts than during bursts. Conversely in cells that were inhibited by a particular odor, responsiveness was only apparent when cells were active. Extensive raw (event timing) data from the cells, together with details of those analyses, are provided as supplementary material, freely available for secondary use by others. <br>
DOI: 10.6084/m9.figshare.2061216
title: UBA5 mutations cause a new form of autosomal recessive cerebellar ataxia

description: Autosomal recessive cerebellar ataxia (ARCA) comprises a large and heterogeneous group of neurodegenerative disorders. Through whole-exome sequencing, we identified compound heterozygous mutations in ubiquitin-like modifier activating enzyme 5 gene (<i>UBA5</i>) in two Chinese siblings presenting with ARCA.
DOI: 10.6084/m9.figshare.2061219.v1
title: Psychological differences toward pedestrian red light crossing between university students and their peers

description: Abstract Based on our site investigation conducted in 2013, we found that the pedestrian red light crossing at the midblock connecting the campus of Southwest University and living area was low, where most of pedestrians are university students and staff. This paper reports a supplementary work applying the Theory of Planned Behaviour (TPB) to identify any psychological differences toward pedestrian red light crossing between university students and their peers. Three social groups participated in the investigation. The first group is the university students in Grade one (Group 1), the other two groups are their previous senior middle school classmates who are now working full time (Group 2) or who are now out of work and school (Group 3). The statistical results indicated The TPB components accounted for 42.9%, 55.3% and 55.4% of the variance of red signal crossing intention for Group 1, Group 2 and Group 3 in the depicted road crossing scenario. The data also showed that there are obvious differences among the participants’ responses to “refrain from crossing” between university students and others, and the subsequent regression analysis revealed the ability to “refrain from crossing” played the most important role in the intention of red light crossing in the depicted scenario. <br>
DOI: 10.6084/m9.figshare.2061405.v2
title: The openings of the pterygopalatine fossa

description: <i>The openings between the Pterygopalatine fossa (PPF) and other regions and the nerve and vessels passing through.</i><i>DOI: </i>10.6084/m9.figshare.2061405
DOI: 10.6084/m9.figshare.2061150
title: Australian house sparrow introduction: facts from newspaper articles

description: These PDF's give details about the house sparrows introduction to Australia. the key points are highlighted in yellow. <br>
DOI: 10.6084/m9.figshare.2061156.v1
title: Data from: Discharge patterning in rat olfactory bulb mitral cells in vivo

description: Here we present a detailed statistical analysis of the discharge characteristics of mitral cells of the main olfactory bulb of urethane-anesthetized rats. Neurons were recorded from the mitral cell layer, and antidromically identified by stimuli applied to the lateral olfactory tract. All mitral cells displayed repeated, prolonged bursts of action potentials typically lasting &gt;100s and separated by similarly long intervals; about half were completely silent between bursts. No such bursting was observed in non-mitral cells recorded in close proximity to mitral cells. Bursts were asynchronous amongst even adjacent mitral cells. The intraburst activity of most mitral cells showed strong entrainment to the spontaneous respiratory rhythm; similar entrainment was seen in some, but not all non-mitral cells. All mitral cells displayed a peak of excitability at ~25 ms after spikes, as reflected by a peak in the interspike interval distribution and in the corresponding hazard function. About half also showed a peak at about 6 ms, reflecting the common occurrence of doublet spikes. Non-mitral cells showed no such doublet spikes. Bursts typically increased in intensity over the first 20-30 s of a burst, during which time doublets were rare or absent. After 20-30s (in cells that exhibited doublets) doublets occurred frequently for as long as the burst persisted, in trains of up to 10 doublets. The last doublet was followed by an extended relative refractory period the duration of which was independent of train length. In cells that were excited by application of a particular odor, responsiveness was apparently greater during silent periods between bursts than during bursts. Conversely in cells that were inhibited by a particular odor, responsiveness was only apparent when cells were active. Extensive raw (event timing) data from the cells, together with details of those analyses, are provided as supplementary material, freely available for secondary use by others. <br>
DOI: 10.6084/m9.figshare.2061216.v1
title: UBA5 mutations cause a new form of autosomal recessive cerebellar ataxia

description: Autosomal recessive cerebellar ataxia (ARCA) comprises a large and heterogeneous group of neurodegenerative disorders. Through whole-exome sequencing, we identified compound heterozygous mutations in ubiquitin-like modifier activating enzyme 5 gene (<i>UBA5</i>) in two Chinese siblings presenting with ARCA.
DOI: 10.6084/m9.figshare.2061405.v4
title: The openings of the pterygopalatine fossa

description: <i>The openings between the Pterygopalatine fossa (PPF) and other regions and the nerve and vessels passing through.</i><br>
DOI: 10.6084/m9.figshare.2061132
title: Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus

description: In Staphylococcus aureus, hundreds of small regulatory or small RNAs (sRNAs) have been identified, yet this class of molecule remains poorly understood and severely understudied. sRNA genes are typically absent from genome annotation files, and as a consequence, their existence is often overlooked, particularly in global transcriptomic studies. To facilitate improved detection and analysis of sRNAs in S. aureus, we generated updated GenBank files for three commonly used S. aureus strains (MRSA252, NCTC 8325, and USA300), in which we added annotations for &gt;260 previously identified sRNAs. These files, the first to include genome-wide annotation of sRNAs in S. aureus, were then used as a foundation to identify novel sRNAs in the community-associated methicillin-resistant strain USA300. This analysis led to the discovery of 39 previously unidentified sRNAs. Investigating the genomic loci of the newly identified sRNAs revealed a surprising degree of inconsistency in genome anno- tation in S. aureus, which may be hindering the analysis and functional exploration of these elements. Finally, using our newly created annotation files as a reference, we perform a global analysis of sRNA gene expression in S. aureus and demonstrate that the newly identified tsr25 is the most highly upregulated sRNA in human serum. This study provides an invaluable resource to the S. aureus research community in the form of our newly generated annotation files, while at the same time presenting the first examination of differential sRNA expression in pathophysiologically relevant conditions.
DOI: 10.6084/m9.figshare.2061150.v1
title: Australian house sparrow introduction: facts from newspaper articles

description: These PDF's give details about the house sparrows introduction to Australia. the key points are highlighted in yellow. <br>
DOI: 10.6084/m9.figshare.2061405.v3
title: The openings of the pterygopalatine fossa

description: <i>The openings between the Pterygopalatine fossa (PPF) and other regions and the nerve and vessels passing through.</i><i>DOI: </i>10.6084/m9.figshare.2061405
DOI: 10.6084/m9.figshare.2061291.v1
title: Data

description: Reaction time data for correct responses.<br>Data are organised as follows:<br>The first part of a column name represents trials that were incongruent (I) or congruent (C).<br>The second part of a column name represents the identity of the target face shown, famous (Fam), personally familiar (Friend) or unfamiliar (Unfam).<br>The third part of a column name represents the target view, frontal (Fr), profile (Pr) or three-quarters view (Q).<br>For example, the column labeled IFamPr refers to RT data in response to a famous target face that was incongruent in identity to the prime face and presented in profile view.
DOI: 10.6084/m9.figshare.2061117
title: McAnally&MartinData.zip

description: Raw data for McAnally & Martin "Modelling change detection and identification under free viewing conditions." <br>Refer to ReadMe.doc for details.<br>
DOI: 10.6084/m9.figshare.2061090
title: Evaporative cooler use influences indoor humidity but not dust mite allergen levels

description: Data for "Evaporative Cooler Use Influences Temporal Indoor Relative Humidity but not Dust Mite Allergen Levels in Homes in a Semi-arid Climate"<br>
DOI: 10.6084/m9.figshare.2061117.v1
title: McAnally&MartinData.zip

description: Raw data for McAnally & Martin "Modelling change detection and identification under free viewing conditions." <br>Refer to ReadMe.doc for details.<br>
DOI: 10.6084/m9.figshare.2061078
title: Supplimentary_dataset_2.zip

description: The index.html file included in this directory will allow exploration of the MED analyses used in our manuscript.
DOI: 10.6084/m9.figshare.2061090.v1
title: Evaporative cooler use influences indoor humidity but not dust mite allergen levels

description: Data for "Evaporative Cooler Use Influences Temporal Indoor Relative Humidity but not Dust Mite Allergen Levels in Homes in a Semi-arid Climate"<br>
DOI: 10.6084/m9.figshare.2061057
title: Coat color Study.xlsx

description: the data contained here in the excel file, is all the data analysis and figures related to the research project entitled: <b>Relationship between the Melanocortin 1-Receptor (MC1R) variant R306ter and physiological responses to thermal or mechanical stimuli in Labrador retriever dogs</b>
DOI: 10.6084/m9.figshare.2061078.v1
title: Supplimentary_dataset_2.zip

description: The index.html file included in this directory will allow exploration of the MED analyses used in our manuscript.