cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ghx3ffbn0
title: Effect of long-term aging on graphene oxide: structure and thermal decomposition

description: FTIR, XRD, Raman, AFM, XPS were used to characterize graphene oxide aged
 for 2 years. The results showed that after aging, the C/O ratio of
 graphene oxide increased from 1.96 to 2.76, but the type of
 oxygen-containing functional groups did not change. In addition to
 oxygen-containing functional groups, the content of -CH3, -CH2- and
 physically adsorbed water also decreased. The change in the structure is
 manifested by the reduction of the average interlayer distance from 1.320
 nm to 1.134 nm. Moreover, ID/IG increased from 0.95 to 1.03, indicating
 that the defect density in the carbon skeleton increased after aging. The
 thermal decomposition process of graphene oxide and its decomposition
 products were analyzed by thermogravimetric combined with Infrared
 spectroscopy. When the temperature exceeds 60°C, the infrared signal of
 CO2 produced by the decomposition of graphene oxide can be detected. After
 aging, the decomposition peak temperature of graphene oxide decreased from
 216 to 195°C. The amount of CO2 produced in the decomposition products is
 almost unchanged, while the amount of CO and H2O produced decreases, and
 the amount of SO2 produced decreases significantly. The OH radicals and
 heat accumulated during the decomposition process may in turn accelerate
 the decomposition rate, leading to a thermal runaway process at 216°C.
DOI: 10.5061/dryad.w6m905qnw
title: Raw data for: Fannin, L. D., Plavcan, J. M., Daegling, D. J., & McGraw, W. S. (2021); Oral processing, sexual selection, and size variation in the circumorbital region of Colobus and Piliocolobus

description: Objectives: The function of the browridge in primates is a subject of
 enduring debate. Early studies argued for a role in resisting masticatory
 stresses, but recent studies have suggested sexual signaling as a
 biological role. We tested associations between circumorbital form, diet,
 oral processing, and social behavior in two species of colobus monkey–the
 King colobus (Colobus polykomos) and Western red or Bay colobus
 (Piliocolobus badius).   Materials and Methods: We quantified
 circumorbital size and dimorphism in a sample of 98 crania. Controlling
 for age and facial size, we tested whether variation in circumorbital
 morphology can be explained by variation in diet, oral processing
 behavior, masticatory muscle size, and mating system. To contextualize our
 results, we included a broader sample of facial dimorphism for 67
 anthropoid species.   Results: Greater circumorbital thickness is
 unrelated to the stresses of food processing. King colobus engages in
 longer bouts of anterior tooth use, chews more per ingestive event, and
 processes a tougher diet, yet circumorbital thickness of C. polykomos is
 reduced compared to P. badius. Differences in circumorbital development do
 not vary with wear or facial size. Greater sexual dimorphism is present in
 P. badius; comparisons across anthropoids indicated patterns of
 circumorbital dimorphism were decoupled from overall size dimorphism.
     Conclusions: The expanded circumorbits of male red
 colobus monkeys evolved in response to intense male-male competition. This
 hypothesis is consistent with the pattern across anthropoid primates and
 highlights the underappreciated role of sexual selection in shaping the
 primate face.
DOI: 10.15468/dl.3vp4ke
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cytisus nigricans",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 693 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002735-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.q573n5thd
title: Degradation of aniline in water with gaseous streamer corona plasma

description: This paper demonstrated the effects and influencing factors in degrading
 aniline by gaseous streamer corona plasma along water surface under
 different discharging gas atmospheres. For aniline with an initial
 concentration of 100 mg/L, the degradation was fastest when the reactor
 was not ventilated, and degradation rate is 98.5% under 7.5 min
 treatment. While the degradation was slowest when Ar was ventilated, the
 degradation rate is 98.6% after treated for 60 min. Some active
 particles were detected using a multi-channel fibre-optic spectrometer
 during the discharge, such as Ar, OH, N2, N2+ and N. In particular, NO was
 detected during air discharge. The NO and N2+ could produce NO3- then
 generated nitric acid would affect the pH value of the solution. The
 intermediate products by N2 discharge is nitrophenol, and nitrophenol
 would converted to p-benzoquinone. The O2 discharge could produce an
 intermediate product of aminophenol. The intermediate products in Ar
 discharge were in small amounts and the final mineralization effect was
 the best.
DOI: 10.5061/dryad.d51c5b028
title: Data from: Trophic interactions regulate peatland carbon cycling

description: Peatlands are the most efficient natural ecosystems for long-term storage
 of atmospheric carbon. Our understanding of peatland carbon cycling is
 based entirely on bottom-up controls regulated by low nutrient
 availability. Recent studies have shown that top-down controls through
 predator-prey dynamics can influence ecosystem function, yet this has not
 been evaluated in peatlands to date. Here, we used a combination of
 nutrient enrichment and trophic-level manipulation to test the hypothesis
 that interactions between nutrient availability (bottom-up) and predation
 (top-down) influence peatland carbon fluxes. Elevated nutrients stimulated
 bacterial biomass and organic matter decomposition. In the absence of
 top-down regulation, carbon dioxide (CO2) respiration driven by greater
 decomposition was offset by elevated algal productivity. Herbivores
 accelerated CO2 emissions by removing algal biomass, while predators
 indirectly reduced CO2 emissions by muting herbivory in a trophic cascade.
 This study demonstrates that trophic interactions can mitigate CO2
 emissions associated with elevated nutrient levels in northern peatlands.
DOI: 10.5281/zenodo.18396367
title: Non-cascade Random Walks in Solid-state High Harmonic Generation

description: The data supports the mainfigures in the manuscript "Non-cascade Random Walks in Solid-state High Harmonic Generation".
DOI: 10.5281/zenodo.18396368
title: Non-cascade Random Walks in Solid-state High Harmonic Generation

description: The data supports the mainfigures in the manuscript "Non-cascade Random Walks in Solid-state High Harmonic Generation".
DOI: 10.5061/dryad.280gb5mp6
title: Influence of videolaryngoscopy using McGrath Mac™ on the need for a helper to perform intubation during general anaesthesia: A multicentre randomised video - no-video trial

description: Objective: We hypothesized was that use of a videolaryngoscope modifies
 the practice of tracheal intubation. Design: Randomized single-blinded
 study. Setting: Three institutions: one academic, one non-profit and one
 profit. Participants: Inclusion criteria were patients aged 18 years
 minimum, requiring orotracheal intubation, without a predicted difficult
 intubation (Arne score &lt;11). Non-inclusion criteria was patients
 requiring a rapid-sequence intubation. 300 patients were included, 271
 randomised, 256 analysed: 123 in the No-Video group and 133 in the Video
 group. Intervention: Tracheal intubation uses a McGrath Mac™
 videolaryngoscope. Patients were randomised into two groups: a Video group
 (screen activated) and a No-Video group (screen hidden). Primary and
 secondary outcome measures: The main outcome was the need for help for the
 anaesthesiologist or the nurse anaesthetist in performing tracheal
 intubation, the sequence being video recorded. Secondary outcomes included
 the ease of intubation (intubation difficulty scale, Cormack and Lehane
 grade, percentage of glottic opening scale score, use of alternative
 techniques, duration, oxygen desaturation, especially). Other outcomes
 included the cooperation between members of the anaesthesiology team, the
 proportion of patients suffering from postoperative hoarseness or sore
 throat, and other adverse events. Results:. Requirement for assistance was
 not decreased in the Video group: 36.1% [95% CI 27.9 to 44.9] versus 45.5%
 [95% 36.5 to 54.7] in the No-Video group (p=0.124). Intubation difficulty
 scale was lower in the Video group (p=0.009); glottis visualization
 (Cormack and Lehane score and glottic opening score) was better in the
 Video group (p&lt;0.001). Duration of intubation was similar between
 groups. Oxygen desaturation or hypotension requiring treatment during the
 intubation period and postoperative complications (hoarseness or sore
 throat) were observed similarly in both groups. No other adverse event
 occurred. Conclusion: In patients without risk of difficulty in airway
 management, videolaryngoscopy did not decrease the requirement for
 assistance to perform intubation. Trial registration: Clinicaltrials.gov
 identifier: NCT02926144
description: eCRF
description: There is 4 tables : - a dictionary of the
 variables - patients characterictics
 - intubation characterictics -
 anesthesia characterictics postoperative
 period characterictics
DOI: 10.5061/dryad.5hqbzkh50
title: Assessing the importance of reproductive modes for the evaluation of altitudinal distribution patterns in tropical frogs

description: Altitudinal patterns in species richness vary among taxa and are shaped by
 the intrinsic traits of different organisms and their response to
 environmental variables. We evaluated the relationship between anuran
 richness and elevation along local and regional altitudinal gradients
 within the Brazilian Atlantic Forest based on data from fieldwork (local
 dataset; 100-1,900 m a.s.l.) and on compiled secondary information
 (regional dataset; 0-2,300 m a.s.l.). We also tested whether frog
 distribution patterns were consistent with the predictions of the
 mid-domain (MDE) and Rapoport effects. In each analysis, we also
 considered the impact of reproductive mode, classified here as either
 water-dependent or water-independent, on species richness patterns.
 Considering the local dataset, species richness decreased with increasing
 altitude for all species pooled and (more strongly) for the species with
 water-dependent reproductive mode, whereas the water-independent species
 presented increased richness at intermediate altitudes. For the regional
 dataset, richness peaked at intermediate altitudes in all three cases. At
 the local scale, the observed patterns (except for the water-dependent
 species) fit the MDE model, whereas at the regional scale, there was no
 fit in any case. Neither local nor regional data were consistent with the
 predictions of the Rapoport rule. Our findings indicate a strong influence
 of reproductive mode on the altitudinal distribution of tropical frogs,
 and that distribution patterns may vary according to the spatial scale
 considered. This highlights the importance of taking life-history traits
 into consideration when assessing the distribution patterns of tropical
 frog species along environmental gradients.
DOI: 10.5061/dryad.g1jwstqq4
title: Testing the niche differentiation hypothesis in wild capuchin monkeys with polymorphic color vision

description: The polymorphic color vision system of most North, Central, and South
 American monkeys is a textbook case of balancing selection, yet the
 mechanism behind it is poorly understood. Previous work has established
 task-specific foraging advantages to different color vision phenotypes:
 dichromats (red-green colorblind) are more efficient foraging for
 invertebrates, while trichromats (color “normal” relative to humans) are
 more efficient foraging for “reddish” ripe fruit, suggesting that niche
 differentiation may underlie the maintenance of color vision variation. We
 explore a prediction of the niche differentiation hypothesis by asking
 whether dichromatic and trichromatic capuchin monkeys (Cebus imitator)
 diverge in their foraging activity budget, specifically testing whether
 dichromats forage more frequently for invertebrates and trichromats forage
 more frequently for “reddish” ripe fruit. To assess this, we analyze a
 large dataset of behavioral scan samples (n = 21,984) from 48 wild adult
 female capuchins of known color vision genotype, dominance rank and
 reproductive status, together with models of food conspicuity. We find no
 significant differences between dichromats and trichromats in the
 frequency of scans spent foraging for different food types but do find
 that nursing females forage less overall than cycling females. Our results
 suggest that the potential for color vision-based niche differentiation in
 foraging time may be curtailed by the energetic requirements of
 reproduction, behavioral synchrony caused by group-living, and/or
 individual preferences. While niche differentiation in activity budgets by
 color vision type is not apparent, fine-scale niche differentiation may be
 occurring. This research enhances our understanding of the evolutionary
 processes maintaining sensory polymorphisms.
description: The data here represent behavioral scan samples collected from
 2007-2018 on 48 adult female white-faced capuchins in Sector Santa Rosa,
 Costa Rica. Detailed data collection methodology can be found in our
 corresponding manuscript of the same name.
DOI: 10.15468/dl.jtx7e5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eumops hansae"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002736-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8931zcrpw
title: Evolutionary sample size and consilience in phylogenetic comparative analysis

description: Phylogenetic comparative methods (PCMs) are commonly used to study
 evolution and adaptation. However, frequently used PCMs for discrete
 traits mishandle single evolutionary transitions. They erroneously detect
 correlated evolution in these situations. For example, hair and mammary
 glands cannot be said to have evolved in a correlated fashion because each
 evolved only once in mammals, but a commonly used model (Pagel’s Discrete)
 statistically supports correlated (dependent) evolution. Using
 simulations, we find that rate parameter estimation, which is central for
 model selection, is poor in these scenarios due to small effective
 (evolutionary) sample sizes of independent character state change. Pagel’s
 Discrete model also tends to favor dependent evolution in these scenarios,
 in part, because it forces evolution through state combinations unobserved
 in the tip data. This model prohibits simultaneous dual transitions along
 branches. Models with underlying continuous data distributions (e.g.,
 Threshold and GLMM) are less prone to favor correlated evolution, but are
 still susceptible when evolutionary sample sizes are small. We provide
 three general recommendations for researchers who encounter these common
 situations: 1) Create study designs that evaluate a priori hypotheses and
 maximize evolutionary sample sizes; 2) assess the suitability of
 evolutionary models—for discrete traits, we introduce the phylogenetic
 imbalance ratio; and 3) evaluate evolutionary hypotheses with a
 consilience of evidence from disparate fields, like biogeography and
 developmental biology. These recommendations are useful for investigations
 that employ any type of PCM.
DOI: 10.5061/dryad.np5hqbzrx
title: Data from: Distinct body-size responses to warming climate in three rodent species

description: In mammals, body-size responses to warming climates are diverse, and the
 mechanisms underlying these differentresponses have been little
 investigated. Using temporal and spatial datasets of three rodent species
 distributed across different climatic zones in China, we investigated
 temporal and spatial trends of body size (length and mass), identified the
 critical drivers of these trends, and inferred the potential causes
 underlying the distinct body-size responses to the critical drivers. We
 found that body mass of all species remained stable over time and across
 space. Body length, however, increased in one species over time and in two
 species across space. Generally, body-length variation was predicted best
 by minimum ambient temperature. Moreover, in two species, body length
 changed linearly with temperature differences between ancestral and
 colonisation areas. These distinct temperature–length patterns may jointly
 be caused by species-specific temperature sensitivities and experienced
 magnitudes of warming. We hypothesise that species or populations
 distributed across distinct temperature gradients evolved different
 intrinsic temperature sensitivities, which affect how their body sizes
 respond to warming climates. Our results suggest that size trends
 associated with climate change should be explored at higher temporal and
 spatial resolutions and include clades of species with similar
 distributions.
description: See details
 in manuscript.
DOI: 10.5061/dryad.tqjq2bvxv
title: RNA-seq analysis reveals the role of Omp16 during Brucella infected RAW264.7 cells

description: Brucellosis is an endemic zoonotic infectious disease in the majority
 developing country that causes huge economic losses. As immunogenic and
 protective antigens at the surface of Brucella spp, outer membrance
 proteins (Omps) are particularly attractive for developing vaccine and
 could have more relevant role in host-pathogen interactions. Omp16, a
 homologue to peptidoglycan-associated lipoproteins (pals), is essential
 for Brucella survival in vitro. At present, the functions of Omp16 has
 been poorly studies. Here, the gene expression profile of RAW264.7 cells
 infected with Brucella. suis vaccine strain 2 (B. suis S2) and Omp16
 mutant was analyzed by RNA-seq to investigate the cellular response
 immediately after Brucella entry. The RNA-sequence analysis revealed that
 a total 303 genes were significantly regulated by B. suis S2 24 h
 postinfection. Of these, 273 differential expressed genes (DEGs) were
 up-regulated and 30 DEGs were down-regulated. These DEGs was mainly
 involved in innate immune signaling pathways, including pattern
 recognition receptors (PRRs), proinflammatory cytokines and chemokines by
 KEGG analysis. In Omp16 mutant infected cells, the expression of 52 total
 cells genes were significantly upregulated and that of 9 total cells genes
 were down-regulated compared to B. suis S2 infected RAW264.7 cells. The
 KEGG pathway analysis showed that several upregulated genes were
 proinflammatory cytokines and chemokines, such as interleukin-6 (IL-6),
 IL-11, IL-12β, CCL2 (C-C motif chemokine), and CCL22. All together, we
 clearly demonstrate that Brucella Omp16 can alter macrophage
 immune-related pathways to increase proinflammatory cytokines and
 chemokines to against Brucella infection, which provide insights into
 illuminating the Brucella pathogenic strategies.
description: <strong>All gene Expression in RNA-seq (three biological
 repetitions)</strong>. All reads.xls
 <strong>Compared to <i>control</i>, the DGEs
 expression in <em>B. suis</em> S2-inmfected RAW 264.7
 cells</strong> Con vs S2.xls
 <strong>Compared to <em>B. suis</em>
 S2-inmfected RAW 264.7 cells, the DGEs expression in ΔOmp16
 &lt;Omp16&gt;-inmfected RAW 264.7 cells</strong>
 S2 vs Omp16.xls <strong>The raw data
 of  control (three biological repetitions)</strong>
 Con_1.dedup.R1.fastq/Con_1.dedup.R2.fastq; Con_2.dedup.R1.fastq/Con_2.dedup.R2.fastq, Con_3.dedup.R1.fastq/Con_3.dedup.R2.fastq. <strong>The raw data of  <em>B. suis </em>S2 (three biological repetitions)</strong> S_1.dedup.R1.fastq/S_1.dedup.R2.fastq; S_2.dedup.R1.fastq/S_2.dedup.R2.fastq, S_3.dedup.R1.fastq/S_3.dedup.R2.fastq. <strong>The raw data of  </strong>ΔOmp16<strong> (three biological repetitions)</strong> Omp16_1.dedup.R1.fastq/Omp16_1.dedup.R2.fastq; Omp16_2.dedup.R1.fastq/Omp16_2.dedup.R2.fastq, Omp16_3.dedup.R1.fastq/Omp16_3.dedup.R2.fastq.
DOI: 10.5061/dryad.r4xgxd2bc
title: Source–sink dynamics assists the maintenance of a pollinating wasp

description: Dispersal that unites spatially subdivided populations into a
 metapopulation with source–sink dynamics is crucial for species
 persistence in fragmented landscapes. Understanding such dynamics for
 pollinators is particularly urgent owing to the ongoing global pollination
 crisis. Here, we investigated the population structure and source–sink
 dynamics of a pollinating wasp (Wiebesia sp. 3) of Ficus pumila in the
 Zhoushan Archipelago of China. We found significant asymmetry in the
 pairwise migrant numbers for 22 of 28 cases on the historical timescale,
 but only 2 on the contemporary timescale. Despite a small population size,
 the sole island not colonized by a superior competitor wasp (Wiebesia sp.
 1) consistently behaved as a net exporter of migrants, supplying large
 sinks. Comparable levels of genetic diversity, with few private alleles
 and low genetic differentiation (total FST: 0.03; pairwise FST:
 0.0005–0.0791), were revealed among all the islands. There was a
 significant isolation-by-distance pattern caused mainly by migration
 between the competition-free island and other islands, otherwise the
 pattern was negligible. The clustering analysis failed to detect multiple
 gene pools for the whole region. Thus, the sinks were most likely
 organized into a patchy population. Moreover, the estimates of effective
 population sizes were comparable between the two timescales. Thus the
 source–sink dynamics embedded within a well-connected population network
 may allow Wiebesia sp. 3 to persist at a competitive disadvantage. This
 study provides evidence that metapopulations in the real world may be
 complicated and changeable over time, highlighting the necessity to study
 such metapopulations in detail.
DOI: 10.5061/dryad.r7sqv9sb9
title: A meta-analysis of tropical land-use change effects on the soil microbiome: emerging patterns and knowledge gaps

description: Modifications to vegetation and soil due to changes in land use have the
 potential to alter the soil microbiome, with consequences for carbon and
 nutrient cycling. Despite the important function of soil microorganisms,
 little is known about their response to land-use change, especially in
 tropical regions where current rates of land conversion are greatest. The
 aim of this meta-analysis was to examine how land-use change influences
 soil microbial properties in tropical ecosystems and to identify current
 trends and knowledge gaps in the literature. We identified 83 published
 paired studies that reported data on microbial biomass, abundance,
 composition, and enzyme activity under representative land-use changes in
 the tropics. We calculated response ratios for studies that compared the
 following: reference forests to (a) agriculture, (b) pastures, (c)
 plantations, and (d) secondary forests. Here you will find all the raw and
 clean data used for the meta-analysis.