cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3tv1523/10
title: Raw: Blank 400/200/4 Inject 1

description: Raw MS data file for Blank Negative Control Sample, 400/200/4 Fraction AFTER NaOH Pretreatment, Injection 1
DOI: 10.5061/dryad.3tv1523/11
title: Raw: Blank 400/200/4 Inject 2

description: Raw MS data file for Blank Negative Control Sample, 400/200/4 Fraction AFTER NaOH Pretreatment, Injection 2
DOI: 10.5061/dryad.3tv1523/3
title: Raw: Moa NaOH Inject 3

description: Raw MS data file for Moa Fossil Sample, NaOH fraction, Injection 3
DOI: 10.5061/dryad.3tv1523/4
title: Raw: Blank NaOH Inject 1

description: Raw MS data file for Blank Negative Control Sample, NaOH fraction, Injection 1
DOI: 10.5061/dryad.3tv1523/5
title: Raw: Blank NaOH Inject 2

description: Raw MS data file for Blank Negative Control Sample, NaOH fraction, Injection 2
DOI: 10.5061/dryad.3tv1523/6
title: Raw: Blank NaOH Inject 3

description: Raw MS data file for Blank Negative Control Sample, NaOH fraction, Injection 3
DOI: 10.5061/dryad.3tv1523/7
title: Raw: Moa NaOH-400/200/4 Inject 1

description: Raw MS data file for Moa Fossil Sample, 400/200/4 Fraction AFTER NaOH Pretreatment, Injection 1
DOI: 10.5061/dryad.3tv1523/8
title: Raw: Moa NaOH-400/200/4 Inject 2

description: Raw MS data file for Moa Fossil Sample, 400/200/4 Fraction AFTER NaOH Pretreatment, Injection 2
DOI: 10.5061/dryad.3tv1523/9
title: Raw: Moa NaOH-400/200/4 Inject 3

description: Raw MS data file for Moa Fossil Sample, 400/200/4 Fraction AFTER NaOH Pretreatment, Injection 3
DOI: 10.5061/dryad.595718c/1
title: metadata_utf8
DOI: 10.5061/dryad.595718c/2
title: abundances_utf8
DOI: 10.5061/dryad.5d4s2r8/1
title: Results of Huntington's disease onset modifier GWA12345 analysis

description: Results of GWA analysis using residual age-at-onset to identify genetic modifiers of Huntington's disease (HD). This study was based on approximately 9,000 HD subjects with European ancestry (namely, GeM-HD GWA12345).
DOI: 10.5061/dryad.82gn3m6/4
title: Figure A3

description: FIGURE A3 The reconstructed result of the ammonium metabolic pathway in the strain FBKL4.010 based on the KEGG PATHWAY database. Red marked genes represent genes related with tetramethylpyrazine synthesis on FBKL4.010 genome. The locus tags of marked genes and the ANI value with the most similar genes were shown next to the marked genes.
DOI: 10.5061/dryad.9232648/4
title: DAM Summary Statistics

description: Summary statistics taken from 'DAM_total' datasheet summarising this activity data using three values: (1) Total activity, (2) the Proportion of time spent awake and (3) the average activity when awake.
DOI: 10.5061/dryad.9232648/5
title: Dmel Activity and Aggregation

description: R script detailing the R code necessary to analyse and make plots of the data from two experiments on Drosophila activity and social aggregation.
DOI: 10.5061/dryad.dm4t39t/1
title: Matesanz_Dryad

description: Number of DNA sequences obtained for each taxa in a DNA metabarcoding study using root mixture mock communities
DOI: 10.5061/dryad.g6bq21b/1
title: Data for Fig 2 & Fig3a-c

description: Electrophysiological data used for Fig 2 and Fig 3a-c. The file include data for current amplitudes and normalized responses obtained by repeated heat stimulation (five times) from Xenopus laevis oocytes expressing TRPV1 from extant and ancestral clawed frog species. A basal current amplitude was obtained in a five-second duration just before each heat stimulation. If the maximum current amplitude was smaller than 0.5 μA, the current data obtained from such oocytes was excluded from analysis since we could not precisely judge the responses of TRPV1 to repeated heat stimulation.
DOI: 10.5061/dryad.g6bq21b/2
title: Data for Fig 3e

description: Thermal activation thresholds estimated by an Arrhenius plot using data obtained from Xenopus laevis oocytes expressing TRPV1 from extant and ancestral clawed frog species. The data for currents and temperatures were obtained at the first heat stimulation from Xenopus laevis oocytes expressing TRPV1 from extant and ancestral clawed frog species. Then, Arrhenius plots were performed as shown in Fig S2.
DOI: 10.5061/dryad.g6bq21b/3
title: Data for Fig 5c

description: Thermal activation thresholds estimated by an Arrhenius plot using data obtained from Xenopus laevis oocytes expressing TRPA1 from Xenopus species. The data for currents and temperatures were obtained at the first heat stimulation from Xenopus laevis oocytes expressing TRPA1 from Xenopus species. Then, Arrhenius plots were performed as shown in Fig S5.
DOI: 10.5061/dryad.g6bq21b/4
title: Data for Fig 5d & 5e

description: Electrophysiological data used for Fig 5d & 5e. The file include data for current amplitudes and normalized responses obtained by heat stimulation, then 0.3 mM cinnamaldehyde stimulation from Xenopus laevis oocytes expressing TRPA1 from Xenopus species. A basal current amplitude was obtained in a five-second duration just before each stimulation. The current amplitude elicited by heat stimulation was normalized to that elicited by 0.3 mM cinnamaldehyde stimulation. 

Dose-dependent responses for Xbo-TRPA1a and Xmu-TRPA1a were obtained by applying different concentrations of cinnamaldehyde (0.01, 0.3, 1, and 2 mM) to Xenopus laevis oocytes expressing TRPA1a from each species. 2 mM cinnamaldehyde was applied to oocytes at the last in all the case to normalize current amplitudes evoked by lower concentrations of cinnamaldehyde.
DOI: 10.5061/dryad.gv0p9n4/15
title: MLTET_MI126
DOI: 10.5061/dryad.gv0p9n4/16
title: MLTET_MI127
DOI: 10.5061/dryad.gv0p9n4/17
title: MLTET_MN117
DOI: 10.5061/dryad.gv0p9n4/18
title: MLTET_MN118
DOI: 10.5061/dryad.gv0p9n4/19
title: MLTET_MO49
DOI: 10.5061/dryad.gv0p9n4/20
title: MLTET_MO57
DOI: 10.5061/dryad.gv0p9n4/21
title: MLTET_MO115
DOI: 10.5061/dryad.gv0p9n4/22
title: MLTET_MO116
DOI: 10.5061/dryad.nc0f501/10
title: snapshots_10_0

description: Contains the Matlab (.mat) file output for each simulation run for rho=10 and transmission type=0
DOI: 10.5061/dryad.nc0f501/11
title: snapshots_10_1

description: Contains the Matlab (.mat) file output for each simulation run for rho=10 and transmission type=1
DOI: 10.5061/dryad.nc0f501/3
title: files_runcode

description: Contains Matlab code (.m files) for running model simulations.
DOI: 10.5061/dryad.nc0f501/4
title: snapshots_0.5_0

description: Contains the Matlab (.mat) file output for each simulation run for rho=0.5 and transmission type=0
DOI: 10.5061/dryad.nc0f501/5
title: snapshots_0.5_1

description: Contains the Matlab (.mat) file output for each simulation run for rho=0.5 and transmission type=1
DOI: 10.5061/dryad.nc0f501/6
title: snapshots_0.5_2

description: Contains the Matlab (.mat) file output for each simulation run for rho=0.5 and transmission type=2
DOI: 10.5061/dryad.nc0f501/7
title: snapshots_2_0

description: Contains the Matlab (.mat) file output for each simulation run for rho=2 and transmission type=0
DOI: 10.5061/dryad.nc0f501/8
title: snapshots_2_1

description: Contains the Matlab (.mat) file output for each simulation run for rho=2 and transmission type=1
DOI: 10.5061/dryad.nc0f501/9
title: snapshots_2_2

description: Contains the Matlab (.mat) file output for each simulation run for rho=2 and transmission type=2
DOI: 10.5061/dryad.r1r839d/1
title: Data and analysis scripts, zip archive

description: The zip archive includes the original data collected for this paper, as well as supporting analysis files. Each script used in the analysis is included here. Scripts include line commenting. Software packages are listed in the README, but must be downloaded separately to run. The zip archive also includes a README file, specifying input and output and purpose of each script. Scripts also available via https://github.com/amob/GenoPheno, although github scripts could possibly become altered from the manuscript versions in the future. Please see Figshare for sequences generated as part of this work https://doi.org/10.6084/m9.figshare.4714030.v1. Please see cited sources in manuscript for publicly available data that are required to repeat analysis, sources are listed in the README.
DOI: 10.5061/dryad.v69f3mq/1
title: ASSAY_1

description: Data from Experiment 1: Characterization of feeding clusters. This dataset contains measurements made on the number, size and membership of feeding clusters in vials of D. melanogaster where the degree of relatedness had been experimentally manipulated.
DOI: 10.5061/dryad.v69f3mq/2
title: ASSAY_2_SURVIVORSHIP

description: Data from Experiment 2: Assessing consequences of larval co-operative behaviour on survivorship and development. This dataset contains measurements made of the egg-to-adult survivorship of D. melanogaster where the degree of relatedness had been experimentally manipulated.
DOI: 10.5061/dryad.v69f3mq/3
title: ASSAY_2_WEIGHTS

description: Data from Experiment 2: Assessing consequences of larval co-operative behaviour on survivorship and development. This dataset contains measurements made of the weight of male and female of D. melanogaster that developed in vials where the degree of relatedness had been experimentally manipulated.
DOI: 10.5061/dryad.v69f3mq/4
title: ASSAY_3

description: Data from Experiment 3: Measuring feeding cluster membership as it relates to kinship. This dataset contains the number of target (wild-type) and competitor (bw-eyed) adults eclosing from a sampled feeding cluster that was collected from a vial where the degree of relatedness between target larvae had been experimentally manipulated.
DOI: 10.5441/001/1.403h24q5/1
title: ThermochronTracking Elephants Kruger 2007

description: Thaker M, Gupte PR, Prins HHT, Slotow R, Vanak AT (2019) Fine-scale tracking of ambient temperature and movement reveals shuttling behavior of elephants to water. Frontiers in Ecology and Evolution 7:4. doi:10.3389/fevo.2019.00004
description: Movement strategies of animals have been well studied as a function of ecological drivers (e.g., forage selection and avoiding predation) rather than physiological requirements (e.g., thermoregulation). Thermal stress is a major concern for large mammals, especially for savanna elephants (Loxodonta africana), which have amongst the greatest challenge for heat dissipation in hot and arid environments. Therefore, elephants must make decisions about where and how fast to move to reduce thermal stress. We tracked 14 herds of elephant in Kruger National Park (KNP), South Africa, for 2 years, using GPS collars with inbuilt temperature sensors to examine the influence of temperature on movement strategies, particularly when accessing water. We first confirmed that collar-mounted temperature loggers captured hourly variation in relative ambient temperatures across the landscape, and, thus, could be used to predict elephant movement strategies at fine spatio-temporal scales. We found that elephants moved slower in more densely wooded areas, but, unexpectedly, moved faster at higher temperatures, especially in the wet season compared to the dry season. Notably, this speed of movement was highest when elephants were approaching and leaving water sources. Visits to water showed a periodic shuttling pattern, with a peak return rate of 10–30 h, wherein elephants were closest to water during the hotter times of the day, and spent longer at water sources in the dry season compared to the wet season. When elephants left water, they showed low fidelity to the same water source, and traveled farther in the dry season than in the wet season. In KNP, where water is easily accessible, and the risk of poaching is low, we found that elephants use short, high-speed bursts of movement to get to water at hotter times of day. This strategy not only provides the benefit of predation risk avoidance, but also allows them to use water to thermoregulate. We demonstrate that ambient temperature is an important predictor of movement and water use across the landscape, with elephants responding facultatively to a "landscape of thermal stress."
DOI: 10.5441/001/1.403h24q5/2
title: ThermochronTracking Elephants Kruger 2007-reference-data

description: Thaker M, Gupte PR, Prins HHT, Slotow R, Vanak AT (2019) Fine-scale tracking of ambient temperature and movement reveals shuttling behavior of elephants to water. Frontiers in Ecology and Evolution 7:4. doi:10.3389/fevo.2019.00004
description: Movement strategies of animals have been well studied as a function of ecological drivers (e.g., forage selection and avoiding predation) rather than physiological requirements (e.g., thermoregulation). Thermal stress is a major concern for large mammals, especially for savanna elephants (Loxodonta africana), which have amongst the greatest challenge for heat dissipation in hot and arid environments. Therefore, elephants must make decisions about where and how fast to move to reduce thermal stress. We tracked 14 herds of elephant in Kruger National Park (KNP), South Africa, for 2 years, using GPS collars with inbuilt temperature sensors to examine the influence of temperature on movement strategies, particularly when accessing water. We first confirmed that collar-mounted temperature loggers captured hourly variation in relative ambient temperatures across the landscape, and, thus, could be used to predict elephant movement strategies at fine spatio-temporal scales. We found that elephants moved slower in more densely wooded areas, but, unexpectedly, moved faster at higher temperatures, especially in the wet season compared to the dry season. Notably, this speed of movement was highest when elephants were approaching and leaving water sources. Visits to water showed a periodic shuttling pattern, with a peak return rate of 10–30 h, wherein elephants were closest to water during the hotter times of the day, and spent longer at water sources in the dry season compared to the wet season. When elephants left water, they showed low fidelity to the same water source, and traveled farther in the dry season than in the wet season. In KNP, where water is easily accessible, and the risk of poaching is low, we found that elephants use short, high-speed bursts of movement to get to water at hotter times of day. This strategy not only provides the benefit of predation risk avoidance, but also allows them to use water to thermoregulate. We demonstrate that ambient temperature is an important predictor of movement and water use across the landscape, with elephants responding facultatively to a "landscape of thermal stress."
DOI: 10.17632/2t82x74zgk.1
title: Data for: Recruitment maneuver leads to alveolar injury in acute respiratory distress syndrome
DOI: 10.17632/69kstx65pf.1
title: Data for: Decarbonizing policies, strategies and building solutions of the retail sector following the Paris Agreement

description: This data set contains sustainability/CSR reports of the highest revenue retailers based upon the Deloitte and Stores Media’s rank (Deloitte & Stores Media, 2016), regarding the reporting periods of 2014-2015 and of 2016-2017. The selected sample comprised half of the total sales revenue presented in this rank, which corresponded to the 27 highest revenue retailers, out of 250 retailers. Amazon, which was part of the initial sample, was excluded from the study since it operated as an exclusively online retailer. Retailers’ CSR reported topics were analysed, as to infer which areas were more addressed by them in social media. A detailed content analysis of the information presented in retailers’ sustainability/CSR reports was conducted, according to the variables “policy”, “strategy” and “energy-related building solutions”, and following the methodology of Sullivan & Gouldson (2013).
DOI: 10.17632/9d6jhgnr2x.1
title: Data for: Dynamical phase transition in spike neuronal firing patterns of hippocampal cells

description: To determine the dynamical state of the neurons, we have focused on the statistics of the distributions of inter-spike intervals. In particular, we identify two states. The first is the basal state, in which cell spiking follows non-correlated (memory-less) random statistics, usually with a Poisson-like distribution of intervals. The second state is obtained by the activation of the phospholipase C (PLC) signaling cascade with oxotremorine-M (Oxo-M), a M1 receptor agonist, which introduces temporal correlations in the spiking intervals. We interpret these correlations as a shift of the neuronal dynamics towards a critical state. We corroborate that this shift in dynamics is due to a change in the M-channel by applying the specific channel blocker XE991, as well as by blocking the phospholipase C (PLC) with U73122.
DOI: 10.17632/dt88ypjgdw.1
title: Data for: Observational Analyses of Topographic Effects on Convective Systems in an Extreme Rainfall Case

description: These data are only part of all the data.Others are too big to upload.
DOI: 10.17632/m54bst8vsj.1
title: Data for: Pharmacokinetics of two Bis-pyridinium Aldoximes

description: Aims: K117 and K127 are bis-pyridinium aldoximes. Both K117 and K127 are developed as potential antidotes in the case of poisoning both acetylcholinesterase and butyrylcholinesterese in terrorist attacks or intoxication with other organophosphorous compounds. Their distribution has been scouted in the body of rats. Main methods: White male Wistar rats were intramuscularly injected. The animals were sacrificed, tissue samples were homogenized, and either K117 or K127 concentrartions were determined using reversed-phase high-performance liquid chromatography. Key findings: Both K117 and K127 were present in all tissues that were analyzed including blood (serum), the brains, cerebrospinal fluid, the eyes, livers, kidneys, lungs and testes. Two novel proper names should be conceptualized in the practice of these antidotes, t1/10 (instead of t1/2) and maximal blood-brain penetration cmaxBBP.(instead of the individual cmax values for blood and also for the brain). Significance: Either K117 or K127 meets the essential requirements for antidotes. Dose dependence and kinetics of their distribution were compared to that of other pyridinium aldoximes.
DOI: 10.17632/m54bst8vsj.2
title: Data for: Pharmacokinetics of two Bis-pyridinium Aldoximes

description: Aims: K117 and K127 are bis-pyridinium aldoximes. Both K117 and K127 are developed as potential antidotes in the case of poisoning both acetylcholinesterase and butyrylcholinesterese in terrorist attacks or intoxication with other organophosphorous compounds. Their distribution has been scouted in the body of rats. Main methods: White male Wistar rats were intramuscularly injected. The animals were sacrificed, tissue samples were homogenized, and either K117 or K127 concentrartions were determined using reversed-phase high-performance liquid chromatography. Key findings: Both K117 and K127 were present in all tissues that were analyzed including blood (serum), the brains, cerebrospinal fluid, the eyes, livers, kidneys, lungs and testes. Two novel proper names should be conceptualized in the practice of these antidotes, t1/10 (instead of t1/2) and maximal blood-brain penetration cmaxBBP.(instead of the individual cmax values for blood and also for the brain). Significance: Either K117 or K127 meets the essential requirements for antidotes. Dose dependence and kinetics of their distribution were compared to that of other pyridinium aldoximes.
DOI: 10.17632/y3b7hvpsfp.1
title: Data for: Multi-objective Optimization on Structural Parameters of Torsional Flow Heat Exchanger

description: The zip file contains project files, screenshots of research results, chart data, experimental data, simulation data, and grid independence verification data.
DOI: 10.5061/dryad.04vk390/3
title: Rawls_Supplementary_data3

description: Raw and normalized metabolomics data from the research study.
DOI: 10.5061/dryad.04vk390/4
title: Rawls_Supplementary_data4

description: TIMBR production scores for metabolites in each of the treatment conditions.
DOI: 10.5061/dryad.04vk390/5
title: Rawls_Supplementary_data5

description: Human Metabolome DataBase classifications for select TIMBR metabolites.
DOI: 10.5061/dryad.04vk390/6
title: Hepatocyte_Toxicology_Data_Supplement_081219

description: Supplemental Information file containing figures and methods relevant to the manuscript, but not included in the main text.
DOI: 10.5061/dryad.04vk390/7
title: Rawls_Supplementary_data6

description: Reaction ID numbers for metabolic reactions used to calculate TIMBR production scores.
DOI: 10.5061/dryad.3tv1523/12
title: Raw: Blank NaOH-400/200/4 Inject 3

description: Raw MS data file for Blank Negative Control Sample, 400/200/4 Fraction AFTER NaOH Pretreatment, Injection 3
DOI: 10.5061/dryad.3tv1523/13
title: Raw: Moa 400/200/4 Inject 1

description: Raw MS data file for Moa Fossil Sample, 400/200/4 Fraction, Injection 1
DOI: 10.5061/dryad.3tv1523/14
title: Raw: Moa 400/200/4 Inject 2

description: Raw MS data file for Moa Fossil Sample, 400/200/4 Fraction, Injection 2
DOI: 10.5061/dryad.3tv1523/15
title: Raw: Moa 400/200/4 Inject 3

description: Raw MS data file for Moa Fossil Sample, 400/200/4 Fraction, Injection 3
DOI: 10.5061/dryad.3tv1523/16
title: Raw: Blank 400/200/4 Inject 1

description: Raw MS data file for Blank Negative Control Sample, 400/200/4 Fraction, Injection 1
DOI: 10.5061/dryad.3tv1523/17
title: Raw: Blank 400/200/4 Inject 2

description: Raw MS data file for Blank Negative Control Sample, 400/200/4 Fraction, Injection 2
DOI: 10.5061/dryad.600vs50/1
title: Data and R code for running IFM simulations

description: Zip folder containing raw data and R code for running Incidence Function Model (IFM) simulations. The 'LoopedIFM_SetupScript.R' script runs the IFM simulations in a loop for the 70 New Planting Procedure (NPP) plantation landscapes. Model parameters (e.g., dispersal distance and population density) can be changed in this script. The set-up script also loads the raw data (raster) files ('FinalRaster70NPPsBuffer.tif' and 'FinalRaster70NPPsCurrentBuffer.tif'), which are converted into a dataframe before the IFM simulations are run. The set-up script calls three functions: the 'IFM2_Function.R' script, which is the IFM simulation code, as well as two 'Cardinal Points function' scripts ('CardinalPoints_WithHCVFunctionParallel.R' and 'CardinalPoints_WithNoHCVFunctionParallel.R'), which set up the modeled landscapes over which to run the simulations. Finally, the 'NPP70Centroids.csv' file is required to run the loop and provides NPP plantation IDs and X/Y coordinates of each plantation centroid.
DOI: 10.5061/dryad.b883mf8/1
title: Python script for D-statistics

description: A source code that we applied for D-statistics (.py file)
DOI: 10.5061/dryad.b883mf8/3
title: Supporting Information

description: Supporting information: Material and Methods, Figs S1-S7, Tables S1-S8.
DOI: 10.5061/dryad.bd4486s/1
title: Data files and script

description: Data files required to run analyses and produce figures. Script included
DOI: 10.5061/dryad.bd4486s/2
title: Photos

description: Photos of copepods from various blue holes on Andros Island. Pigmentation information was extracted from these photos.
DOI: 10.5061/dryad.g6bq21b/5
title: Data for Fig 6

description: Electrophysiological data used for Fig 6. The file include data for current amplitudes and normalized responses obtained by heat stimulation, then 0.3 mM cinnamaldehyde stimulation from Xenopus laevis oocytes expressing TRPA1a or TRPA1b from Xenopus laevis. Basal current amplitudes were obtained in a five-second duration just before each stimulation. The current amplitude elicited by heat stimulation was normalized to that elicited by 0.3 mM cinnamaldehyde stimulation. 

Dose-dependent responses for TRPA1a or TRPA1b from Xenopus laevis were obtained by applying different concentrations of cinnamaldehyde (0.01, 0.3, 1, and 2 mM) to Xenopus laevis oocytes expressing TRPA1a or TRPA1b. 2 mM cinnamaldehyde was applied to oocytes at the last in all the case to normalize current amplitudes evoked by lower concentrations of cinnamaldehyde.
DOI: 10.5061/dryad.g6bq21b/6
title: Nucleotide sequences for Xenopus TRPV1

description: Aligned nucleotide sequences for TRPV1 from extant and ancestral clawed frog species.