cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1117964871
title: Munich Crystallography BAG

description: The diverse groups of the Munich Crystallography BAG study a far range of subjects, reaching from structural aspects of fundamental cellular processes - such as RNA processing, protein folding and degradation, DNA repair, chromatin remodelling, enzymes - to the design of foldamers. The research groups are located at the LMU and TUM universities in Munich, at the Max-Planck-Institute of Biochemistry, Martinsried, and the Helmholtz Center, Neuherberg. Out-groups are located at the universities in Darmstadt and Ulm, Germany. The research groups use X-ray crystallography, single-particle cryo-EM, SAXS, NMR, Alphafold and HDX and XL-MS mass-spectrometry for structural studies.
DOI: 10.15151/esrf-es-1118675090
title: Structural Biology of Macromolecules and Macromolecular complexes from India

description: Structural biology research groups located in India constitute the INDIA-BAG and will utilize MX & SAXS to study different biological macromolecules. The non-proprietary agreement signed between ESRF and the Department of Biotechnology (DBT) enables studies that provide fundamental mechanistic insight regarding different biological processes. A brief description of over 50 research groups is provided in the global summary and a summary of their research contributions involving data collected at ESRF is provided in the 2 year BAG report. The ESRF-India partnership is supported by a single grant provided to the RCB by the DBT. Please note that a report listing no. of shifts utilized, details of users and the research output from these visits has to be sent to the DBT to obtain release of funds to pay ESRF membership dues. Consequently, all the structural biologists from India are grouped in a single BAG to enable monitoring of progress to collect the required statistics.
DOI: 10.15151/esrf-es-1120139874
title: IBS BAG

description: The IBS BAG includes in this proposal IBS teams and external groups from CEA-Cadarache (St Paul lez Durance) and IRBA (Brétigny-sur-Orge). We study structure-function relationships of proteins emphasizing in human health, biotechnology and methodology. Most of the projects are a continuation of the MX-2398 proposal and can be grouped into different topics as follows: host-pathogen interaction, new drug targets, fundamental cellular mechanisms, membrane proteins, biotechnological applications and methodology. Some of these projects use integrative approaches (X-ray crystallography, SAXS, NMR (and cryo-EM), together with other biophysical studies) with the aim to fully understand the complexity of the biological macromolecular systems on study.
DOI: 10.15151/esrf-es-1254872334
title: 3DXRD mapping of Cu3P thin films

description: 3DXRD mapping of Cu3P thin films
DOI: 10.5281/zenodo.8104995
title: Dataset on floating micro- and mesoplastics off Boso Peninsular, Japan in 2019

description: We provide two files, an excel file named: "Dataset on floating micro- and mesoplastics in the Kuroshio Extension re-circulation gyre in 2019" and a PDF file named "Metadata-Dataset". The excel file provides the dataset of micro- and mesoplastics collected in the Kuroshio Extension Recirculation gyre (KERG), off Boso Peninsular, Japan in August and September 2019. The PDF file provides a detailed description of the dataset. Please, see details in the file "Metadata-Dataset"
description: Please, see details in the file "Metadata-Dataset"
DOI: 10.5281/zenodo.8104994
title: Dataset on floating micro- and mesoplastics off Boso Peninsular, Japan in 2019

description: We provide two files, an excel file named: "Dataset on floating micro- and mesoplastics in the Kuroshio Extension re-circulation gyre in 2019" and a PDF file named "Metadata-Dataset". The excel file provides the dataset of micro- and mesoplastics collected in the Kuroshio Extension Recirculation gyre (KERG), off Boso Peninsular, Japan in August and September 2019. The PDF file provides a detailed description of the dataset. Please, see details in the file "Metadata-Dataset"
description: Please, see details in the file "Metadata-Dataset"
DOI: 10.6084/m9.figshare.23614428
title: Additional 1.xls

description: Clinical Plasma Cells-related Genes to Aid Therapy in Colon Cancer, additional file.
DOI: 10.6084/m9.figshare.22721188.v1
title: Hyperbolic polaritonic crystals with configurable low-symmetry Bloch modes

description: Near-field imaging of polaritonic crystal
DOI: 10.6084/m9.figshare.22721188
title: Hyperbolic polaritonic crystals with configurable low-symmetry Bloch modes

description: Near-field imaging of polaritonic crystal
DOI: 10.5519/qd.5ksj0952
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.agfvdqcu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.23614446
title: cohort data

description: The general hospital data was detailed in the "hospdata.csv". The ICU data was detailed in the "final_ich_ot2.csv".
DOI: 10.6084/m9.figshare.23614446.v1
title: cohort data

description: The general hospital data was detailed in the "hospdata.csv". The ICU data was detailed in the "final_ich_ot2.csv".
DOI: 10.6084/m9.figshare.23612886.v1
title: Suppl Table 10.docx

description: The role of diet-related bacteria in NCDs: list of references.
DOI: 10.6084/m9.figshare.23612889
title: Suppl Table 2_corr.xlsx

description: Additional characteristics of the Czech study population of vegans and omnivores.
DOI: 10.6084/m9.figshare.23612889.v1
title: Suppl Table 2_corr.xlsx

description: Additional characteristics of the Czech study population of vegans and omnivores.
DOI: 10.6084/m9.figshare.23612889.v2
title: Suppl Table 2_corr.xlsx

description: Additional characteristics of the Czech study population of vegans and omnivores.
DOI: 10.6084/m9.figshare.23612892.v1
title: Suppl Table 1_corr.xlsx

description: Characteristics of the study population of vegans and omnivores.
DOI: 10.6084/m9.figshare.23612922.v1
title: Suppl Table 5 (SCFA).xlsx

description: Short-chain fatty acid spectrum in serum.
DOI: 10.6084/m9.figshare.23612916
title: Suppl Table 9 (ANOVA results)_additional_info.xlsx

description: Variables selected by two-factor ANOVA.
DOI: 10.6084/m9.figshare.23612862
title: Suppl Table 7 (core lipidome).xlsx

description: Core lipidome composition.
DOI: 10.6084/m9.figshare.23612862.v2
title: Suppl Table 7 (core lipidome).xlsx

description: Core lipidome composition.
DOI: 10.6084/m9.figshare.23612862.v1
title: Suppl Table 7 (core lipidome).xlsx

description: Core lipidome composition.
DOI: 10.6084/m9.figshare.23612886.v2
title: Suppl Table 10.docx

description: The role of diet-related bacteria in NCDs: list of references.
DOI: 10.5519/qd.nhtdjx9c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (783 records)
DOI: 10.15151/esrf-es-1118655655
title: The proposal is a continuation of the MX-2367 proposal : CryoEM-BAG France: Structural Biology using Cryo-EM in France

description: This proposal gathers Principal investigators from French Institutions that use cryo-EM to unravel the molecular mechanisms associated with various biological processes. Scientists belong to 8 centres that currently use Cryo-EM and have already used ESRF CM01 beamline. All the PIs in this application have already used CM01 during the past 2 years. Projects include the study of bacterial secretion systems (Bordeaux, Lyon, Paris), viruses and their infection mechanisms (Marseille), translation and its control (Bordeaux, Toulouse, Paris, Strasbourg), transcription (Strasbourg, Paris) and Macromolecular transport (Bordeaux, Lyon, Strasbourg). Note that there is been a change of PI at the Montpelliier center, with G; Labesse replacing P. Bon as a PI.
DOI: 10.14469/hpc/12766
title: Artemisinin: are stereo-electronics at the core of its (re)activity?
DOI: 10.14469/hpc/12767
title: The inner secrets of the DNA structure.
DOI: 10.5281/zenodo.8105389
title: Role Ambiguity and Conflict, Job Satisfaction, and Commitment among Faculty Members -- Data and R Script

description: Raw data file from questionnaires filled by 150 faculty member at an institution of higher education in Lebanon in Fall 2019. R script for analysis as presented in the article "Wait! What’s my job? Role ambiguity and role conflict as predictors of commitment among faculty" also included.
DOI: 10.5281/zenodo.8105388
title: Role Ambiguity and Conflict, Job Satisfaction, and Commitment among Faculty Members -- Data and R Script

description: Raw data file from questionnaires filled by 150 faculty member at an institution of higher education in Lebanon in Fall 2019. R script for analysis as presented in the article "Wait! What’s my job? Role ambiguity and role conflict as predictors of commitment among faculty" also included.
DOI: 10.5517/ccdc.csd.cc2by4s7
title: CCDC 2172969: Experimental Crystal Structure Determination

description: Related Article: Mohd Nazish, Christina M. Legendre, Nico Graw, Regine Herbst-Irmer, Shahila Muhammed, Pattiyil Parameswaran, Dietmar Stalke, Herbert W. Roesky|2023|Inorg.Chem.|62|9306|doi:10.1021/acs.inorgchem.2c03695
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by4t8
title: CCDC 2172970: Experimental Crystal Structure Determination

description: Related Article: Mohd Nazish, Christina M. Legendre, Nico Graw, Regine Herbst-Irmer, Shahila Muhammed, Pattiyil Parameswaran, Dietmar Stalke, Herbert W. Roesky|2023|Inorg.Chem.|62|9306|doi:10.1021/acs.inorgchem.2c03695
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2by4v9
title: CCDC 2172971: Experimental Crystal Structure Determination

description: Related Article: Mohd Nazish, Christina M. Legendre, Nico Graw, Regine Herbst-Irmer, Shahila Muhammed, Pattiyil Parameswaran, Dietmar Stalke, Herbert W. Roesky|2023|Inorg.Chem.|62|9306|doi:10.1021/acs.inorgchem.2c03695
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23614482
title: Impact of Time-to-Treatment Initiation on Survival in Single Primary Non-Small Cell Lung Cancer：a Population-based Study.csv

description: We analyzed NSCLC data from the Surveillance, Epidemiology, and End Results database, focusing on lung adenocarcinoma (LUAD) and lung squamous carcinoma (LUSC).
DOI: 10.6084/m9.figshare.23020052.v2
title: Data Figures

description: Selecting appropriate plant is a key factor for phytoextraction of heavy metals from contaminated soils.
DOI: 10.5519/qd.k6un9jya
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7964 records)
DOI: 10.12686/a16
title: Mars Seismic Catalogue, InSight Mission; V10 2022-04-01

description: The NASA InSight mission installed a single seismic station on the surface of Mars in 2019. The Marsquake Service (MQS) is an official service of the InSight ground services. MQS is tasked with detecting and characterising marsquakes, and curating the catalogue. Waveform data is publicly released on a 3 month schedule. Starting on 2 January, 2020, an updated MQS catalogue is released with each new waveform dataset. This is Data Release 10.
DOI: 10.15138/p646-pa37
title: Earth System Research Laboratory Carbon Cycle and Greenhouse Gases Group Flask-Air Sample Measurements of SF6 at Global and Regional Background Sites, 1967-Present

description: The CCGG cooperative air sampling network effort began in 1967 at Niwot Ridge, Colorado. Today, the network is an international effort which includes regular discrete samples from the NOAA ESRL/GML baseline observatories, cooperative fixed sites, and commercial ships. Air samples are collected approximately weekly from a globally distributed network of sites. Samples are analyzed for Carbon Dioxide (CO2), Methane (CH4), Carbon Monoxide (CO), Hydrogen Gas (H2), Nitrous Oxide (N2O), and Sulfur Hexafluoride (SF6); and by INSTAAR for the stable isotopes of CO2 and CH4 and for many volatile organic compounds (VOC) such as ethane (C2H6), ethylene (C2H4) and propane (C3H8). Measurement data are used to identify long-term trends, seasonal variability, and spatial distribution of carbon cycle gases.
DOI: 10.5281/zenodo.1473126
title: Pmma Mixed Mode Fracture

description: This is a complete dataset of a mixed mode crack propagation experiment on PMMA. In addition to global load and displacement measurements, full displacement fields obtained by DIC are provided. DIC was also used to extract SIF and crack tip position during loading, allowing for validation of computational failure models.

The file PMMA_Mixed_mode_fracture.pdf provides for a detailed description of the experiment as well as of the data available on this platform.
description: {"references": ["R\u00e9thor\u00e9, J. (2015). Automatic crack tip detection and stress intensity factors estimation of curved cracks from digital images. International Journal for Numerical Methods in Engineering, 103(7), 516-534."]}
DOI: 10.5281/zenodo.237116
title: High density genotypes of French Sheep populations

description: Genotypes of 27 French sheep populations on the Illumina Ovine HD SNP chip.

Dataset and results are presented in the preprint:

<strong>High density genome scan for selection signatures in French sheep reveals allelic heterogeneity and introgression at adaptive loci. </strong>Christina Marie Rochus, Flavie Tortereau, Florence Plisson-Petit, Gwendal Restoux, Carole Moreno-Romieux, Gwenola Tosser-Klopp, Bertrand Servin. bioRxiv 103010; doi: https://doi.org/10.1101/103010
description: These data were collected thanks to the support of France Génétique Elevage and dedicated funding from the Animal Genetics Division of INRA.
description: {"references": ["Preprint: Rochus et al. bioRxiv 103010 https://doi.org/10.1101/103010", "Rochus et al. BMC Genomics (2018) https://doi.org/10.1186/s12864-018-4447-x"]}
DOI: 10.6084/m9.figshare.1026131
title: MD trajectories of ALA2 (fileset)

description: Ten 10ns trajectories of of alanine dipeptide, simulated using OpenMM 6.0.1 (CUDA platform, NVNDIA GTX660) with the AMBER99SB-ILDN force field at 300K (langevin dynamics, friction coefficient of 91/ps, timestep of 2fs) with GBSA implicit solvent. The coodrinates are saved every 1ps. Each trajectory file contains 9,999 snapshots. The dataset was generated by running the simulate-ala2.py script (included). The total size of this dataset is 30MB.
DOI: 10.34740/kaggle/dsv/6065985
title: Health Workforce Shortage Areas
DOI: 10.34740/kaggle/dsv/6065993
title: AutoXGB
DOI: 10.6084/m9.figshare.23153927
title: GenoSysFat smoltification - sample meta

description: Meta data for Atlantic salmon fish samples from smoltification and photoperiod length experiment. For each sample given is the sample name, the week sampled at during the experiment, tank number fish was raised, individual fish number, and experiment (short photoperiod exposure between weeks 1 and 10) or control (only long photoperiod exposure) treatment.
DOI: 10.6084/m9.figshare.23153927.v1
title: GenoSysFat smoltification - sample meta

description: Meta data for Atlantic salmon fish samples from smoltification and photoperiod length experiment. For each sample given is the sample name, the week sampled at during the experiment, tank number fish was raised, individual fish number, and experiment (short photoperiod exposure between weeks 1 and 10) or control (only long photoperiod exposure) treatment.
DOI: 10.6084/m9.figshare.23154029
title: GenoSysFat smoltification - gene annotations

description: A table of gene IDs, gene names, and description of associated protein product, from the NCBI refseq annotation of Atlantic salmon (<em>Salmo salar</em>; version ICSASG_v2, GCF_000233375.1) used in the analysis.
DOI: 10.6084/m9.figshare.23154029.v1
title: GenoSysFat smoltification - gene annotations

description: A table of gene IDs, gene names, and description of associated protein product, from the NCBI refseq annotation of Atlantic salmon (<em>Salmo salar</em>; version ICSASG_v2, GCF_000233375.1) used in the analysis.
DOI: 10.6084/m9.figshare.23154572
title: GenoSysFat smoltification - gene counts

description: Gene count data from aligning RNA-seq data from the experiment to the genome of Atlantic salmon (NCBI refseq 100: GCF_000233375.1_ICSASG_v2) and estimation of read counts, through the nf-core pipeline rnaseq (version 3.9).
DOI: 10.6084/m9.figshare.23154572.v1
title: GenoSysFat smoltification - gene counts

description: Gene count data from aligning RNA-seq data from the experiment to the genome of Atlantic salmon (NCBI refseq 100: GCF_000233375.1_ICSASG_v2) and estimation of read counts, through the nf-core pipeline rnaseq (version 3.9).
DOI: 10.6084/m9.figshare.23154575
title: GenoSysFat smoltification - gene TPM

description: Gene count data, in TPM (transcripts per million reads) values, from aligning RNA-seq data from the experiment to the genome of Atlantic salmon (NCBI refseq 100: GCF_000233375.1_ICSASG_v2) and estimation of read counts, through the nf-core pipeline rnaseq (version 3.9).
DOI: 10.6084/m9.figshare.23154575.v1
title: GenoSysFat smoltification - gene TPM

description: Gene count data, in TPM (transcripts per million reads) values, from aligning RNA-seq data from the experiment to the genome of Atlantic salmon (NCBI refseq 100: GCF_000233375.1_ICSASG_v2) and estimation of read counts, through the nf-core pipeline rnaseq (version 3.9).
DOI: 10.6084/m9.figshare.23154821
title: GenoSysFat smoltification - photoperiod DEGs week 19

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at week 19 of the experiment between the short photoperiod exposed experimental group and the control group. Higher fold change relates to higher expression after short photoperiod exposure.
DOI: 10.6084/m9.figshare.23154821.v1
title: GenoSysFat smoltification - photoperiod DEGs week 19

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at week 19 of the experiment between the short photoperiod exposed experimental group and the control group. Higher fold change relates to higher expression after short photoperiod exposure.
DOI: 10.6084/m9.figshare.23154833
title: GenoSysFat smoltification - photoperiod degs week 10

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at week 10 of the experiment between the short photoperiod exposed experimental group and the control group. Higher fold change relates to higher expression after short photoperiod exposure.
DOI: 10.6084/m9.figshare.23154833.v1
title: GenoSysFat smoltification - photoperiod degs week 10

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at week 10 of the experiment between the short photoperiod exposed experimental group and the control group. Higher fold change relates to higher expression after short photoperiod exposure.
DOI: 10.6084/m9.figshare.23614629
title: Raw data and calculations in Excel format.

description: This work uses projected population data from 2022 World Population Prospects published by UN DESA.
DOI: 10.6084/m9.figshare.23154851
title: GenoSysFat smoltification - salinity degs week 25

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at week 25 of the experiment between the fish from the experimental group transfered to seawater and those remaining in freshwater conditions. Higher fold change relates to higher expression in seawater.
DOI: 10.6084/m9.figshare.23154851.v1
title: GenoSysFat smoltification - salinity degs week 25

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at week 25 of the experiment between the fish from the experimental group transfered to seawater and those remaining in freshwater conditions. Higher fold change relates to higher expression in seawater.
DOI: 10.6084/m9.figshare.23155181
title: GenoSysFat smoltification - kegg hierarchy

description: Table of KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways for Atlantic salmon genome (version ICSASG_v2) from KEGG database, and an assoicated slim term for the pathway.
DOI: 10.6084/m9.figshare.23155181.v1
title: GenoSysFat smoltification - kegg hierarchy

description: Table of KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways for Atlantic salmon genome (version ICSASG_v2) from KEGG database, and an assoicated slim term for the pathway.
DOI: 10.6084/m9.figshare.23155193
title: GenoSysFat smoltification - smoltification degs

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at any week of the experiment for the short photoperiod exposed experimental group, using an ANOVA-like test for differentially expressed genes.
DOI: 10.6084/m9.figshare.23155193.v1
title: GenoSysFat smoltification - smoltification degs

description: Atlantic salmon genes detected to be significantlly (FDR&lt;0.05) differentially expressed at any week of the experiment for the short photoperiod exposed experimental group, using an ANOVA-like test for differentially expressed genes.
DOI: 10.6084/m9.figshare.23155286
title: GenoSysFat smoltification - kegg enrichment

description: Enrichment results for KEGG pathways in clusters of genes differentally expressed at points across smoltification.
DOI: 10.6084/m9.figshare.23155286.v1
title: GenoSysFat smoltification - kegg enrichment

description: Enrichment results for KEGG pathways in clusters of genes differentally expressed at points across smoltification.
DOI: 10.5517/ccdc.csd.cc2fft7y
title: CCDC 2247600: Experimental Crystal Structure Determination

description: Related Article: Hakan Bülbül, Şehriman Atalay, Aliye Gedİz Ertürk|2023|J.Mol.Struct.|1291|136002|doi:10.1016/j.molstruc.2023.136002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23614776
title: Supplementary Material

description: This dataset provides extended data supporting claims of a systematic review (PRISMA 2020 guidelines) about the process of integration of Media and Information Literacy (MIL) into the curriculum: a) research process; b) studies included; c) data.
DOI: 10.6084/m9.figshare.23614776.v1
title: Supplementary Material

description: This dataset provides extended data supporting claims of a systematic review (PRISMA 2020 guidelines) about the process of integration of Media and Information Literacy (MIL) into the curriculum: a) research process; b) studies included; c) data.