cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21524391.v1
title: Weibo sentiment analysis validation dataset

description: Humans spend most of their time in settlements, and the built environment of settlements may affect the residents’ sentiments. Research in this field is interdisciplinary, integrating urban planning and public health. However, it has been limited by the difficulty of quantifying subjective sentiments and the small sample size. This study uses 147,613 Weibo text check-ins in Xiamen from 2017 to quantify residents' sentiments in 1,096 neighborhoods in the city. A multilevel regression model and gradient boosting decision tree (GBDT) model are used to investigate the multilevel and nonlinear effects of the built environment of neighborhoods and subdistricts on residents' sentiments. The results show the following: 1) The multilevel regression model indicates that at the neighborhood level, a high land value, low plot ratio, low population density, more security facilities, and neighborhoods close to water are more likely to improve the residents’ sentiments. At the subdistrict level, more green space and commercial land, less industry, higher building density and road density, and a smaller migrant population are more likely to promote positive sentiments. Approximately 19% of the total variance in the sentiments occurred among subdistricts. 2) The number of security facilities, the proportion of green space and commercial land, and the density of buildings and roads are linearly correlated with residents' sentiments. The land value and the number of security facilities are basic needs and exhibit nonlinear correlations with sentiments. The plot ratio, population density, and the proportions of industrial land and the migrant population are advanced needs and are nonlinearly correlated with sentiments. The quantitative analysis of sentiments enables setting a threshold of the influence of the built environment on residents' sentiments in neighborhoods and surrounding areas. Our results provide data support for urban planning and implementing targeted measures to improve the living environment of residents.
DOI: 10.6084/m9.figshare.26087860.v1
title: HiGTS_2009s3

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2009s3 contains the data from July 1, 2009 to September 30, 2009.
DOI: 10.17632/jzvfrgmjd5
title: Data for "Recommendations for Increasing Sample Diversity in Multisensory Research in Autism: A Systematic Review"

description: Variables extracted from studies used in systematic review
DOI: 10.6084/m9.figshare.16780132.v1
title: Dataset with additional information on the audio recordings from predator presentations

description: Dataset used to run the script (also in the FigShare depository), extracted from the additionnal information recorded from the 58 audio recordings of the vocal reaction of titi monkeys when presented to three stuffed predators (tayra, oncilla and caracara). <br><br>Dataset creation: Additional information was collected by Berthet et al. and Cäsar et al. and entered into different excel files. We've lately included this information in the new dataset (to have all informations in the same format), which is the one we will be using in our script.<br>
DOI: 10.6084/m9.figshare.23550117.v2
title: Fig 3 Raw data

description: Antibody engineering and characterization
DOI: 10.6084/m9.figshare.26524660.v1
title: <b>Evaluation of defense genes expression and the virulence factor </b><b><i>Cac1</i></b><b> in </b><b><i>Phaseolus vulgaris</i></b><b> and </b><b><i>Colletotrichum lindemuthianum</i></b><b> interaction</b>

description: In recent years, there has been great interest in understanding the different virulence factors of <i>Colletotrichum </i>spp. and the plant defense response. In this context, the aim of this study was to evaluate the defense response of Sutagao bean plants to two different isolates of <i>C. lindemuthianum</i> and the expression of the virulence factor <i>Cac1</i>, which is involved in the kinase signaling cascade that regulates the morphogenesis and pathogenesis of this fungus. Morphological, molecular, and pathogenicity characterizations of both isolates were performed, showing differences between them and classifying them into different groups within the <i>Colletotrichum</i> Orbiculare clade. In addition, in interaction with the plant, they differentially expressed the virulence factor <i>Cac1</i> in the early stages of infection, and the plant also differentially expressed some defense genes according to the virulence of the pathogen.Our research contributes to the understanding of the early expression of bean defense genes and the <i>Cac1</i> virulence factor of <i>C. lindemuthianum</i> during the infection process. Additionally, the methodologies and results can be of great help and interest to researchers in the molecular plant microbe interaction area.
DOI: 10.15468/dl.qcpnft
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9919 -21.4718,35.9648 -21.4413,35.9648 -24.1383,36.0558 -23.8719,35.9919 -21.4718))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013433-250525065834625/datasets/export for details.
DOI: 10.17632/yk75sxk6p5
title: Raman Scattering gathering from pure glucose liquid: 14-labels and 10-labels datasets

description: These datasets are derived from Raman spectroscopy collected from the reflection of a laser after passing glucose fluid with different fixed glucose levels. These datasets were produced by a large-size Raman spectrometer at Vietnam National University, Hanoi.
There are 2 datasets, including a dense dataset and a spare dataset.
The glucose levels in the dense dataset include 14 levels. Each level has 5 samples. The total number of sample is 70.
The glucose levels in the spare dataset include 10 levels. Each level has 5 samples. The total number of sample is 50.
The files in each of the two datasets include 2 CSV files: the data file and the label file.
[1] The data file contains all Raman scattering sequences. Each sequence lies in a row and has 2048 numbers.
[2] The label file contains all label code Raman scattering sequences in the data file [1]. Each label code lies in a row, which is the label of the Raman scattering sequence in the same row in the data file [1].
Details:
Tenlabels_RamanData.csv: The data file of the spare dataset.
Tenlabels_labels.csv: The label file of the spare dataset.
Fourteenlabels_RamanData.csv: The data file of the dense dataset.
Fourteenlabels_labels.csv: The label file of the dense dataset.
DOI: 10.6084/m9.figshare.25922524.v1
title: Molecular motor tug-of-war regulates elongasome cell wall synthesis dynamics in <i>Bacillus subtilis</i>

description: Raw data for Middlemiss et al, Nature Communications (2024).
Please note that ghe file names of the ZIP files should be regarded as the definitive reference to the relevant figures in the paper.
As figure ordering has changed since the initial submission, some of the figure names for folders within the ZIP files do not exactly match the current the current figure names.
DOI: 10.6084/m9.figshare.26384140.v2
title: Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation"

description: This repository contains the data and source code used to produce the results presented in:Uieda, L., Souza-Junior, G. F., Uppal, I., Oliveira Jr., V. C. (2025). Euler inversion: Locating sources of potential-field data through inversion of Euler’s homogeneity equation. <i>Geophysical Journal International</i>. doi:10.1093/gji/ggaf114.AbstractEarth scientists can estimate the depth of certain rocks beneath Earth's surface by measuring the small disturbances that they cause in the Earth's gravity and magnetic fields. A popular method for this is <b>Euler deconvolution</b>, which is widely available in geoscience software and can be run quickly on a standard computer. Unfortunately, Euler deconvolution has some shortcomings: 1) the approximate shape of the rocks must be known, for example, a sphere or a wide flat slab, represented by the <b>structural index</b> 2) the depth of the rocks is not well estimated when there is noise in our data, which is a common occurrence. We propose a new method, <b>Euler inversion</b>, which fixes some of the shortcomings of Euler deconvolution by using more adequate (and complex) mathematics. Our method is less sensitive to noise in the data and is also able to determine the approximate shape of the source (the structural index). Euler inversion is also fast to execute on a standard computer, making it a practical alternative to Euler deconvolution on an Earth scientists toolbox.LicenseAll Python source code (including <code>.py</code> and <code>.ipynb</code> files) is made available under the MIT license. You can freely use and modify the code, without warranty, so long as you provide attribution to the authors. See <code>LICENSE-MIT.txt</code> for the full license text.The manuscript text (including all LaTeX files), figures, and data/models produced as part of this research are available under the Creative Commons Attribution 4.0 License (CC-BY). See <code>LICENSE-CC-BY.txt</code> for the full license text.
DOI: 10.6084/m9.figshare.19105049.v2
title: A global dataset to parametrize critical nitrogen dilution curves for major crop species

description: Authors:<br>Ignacio Ciampitti1, Emmanuela van Versendaal1, Juan Francisco Rybecky1, Josefina Lacasa1, Javier Fernandez1, David Makowski2, and Gilles Lemaire3<br>1 Department of Agronomy, Kansas State University2 University Paris-Saclay, INRAE, AgroParisTech3 INRAE<br><br>This dataset contains the result of extracting data of plant biomass and plant N concentration from 36 papers with a total of 4454 observations for 19 major crop species from 16 countries around the globe. This dataset is relevant to develop more universal critical N dilution curves, help to pinpoint factors limiting plant N status (and N nutrition index, NNI), and lead to refine N recommendation for major crop species under broad scenarios of different genotypes, environment, and management (GxExM).<br><br>For more information related to this dataset or codes, please contact the corresponding author at: ciampitti@ksu.edu<br>For cite the dataset, please use:<br>Ciampitti, I., van Versendaal, E., Rybecky, J.F., Lacasa, J., Fernandez, J., Makowski, D., & Lemaire, G. A global dataset to parametrize critical nitrogen dilution curves for major crop species. figshare https://figshare.com/s/3e3f60fe55c1ef6ff62a (2022).
DOI: 10.17632/2kn5ymgwvg
title: CDF Lecture Notes on Membrane Excitability

description: These Mathematica® dynamic lecture notes (CDF, computational document format) focus on principles governing the generation of cellular electricity in general, and the "action potential", a pulse-like voltage wave across membranes of excitable cells (e.g. nervous system, muscles, heart, endocrine system), in particular. Cellular electrical phenomena are supported by ionic currents across membranes; so we start by describing the behaviour of ions in solution and ways by which ionic currents across membranes are realised. These include diffusion, osmosis-related ionic fluxes, and fluxes down electrochemical gradients. We then continue with dynamics of macroscopic and microscopic membrane ionic conductances and their relation to electricity. The lectures then focus on introduction to different classes of mathematical models that capture the phenomenon and mechanism of action potential generation at various timescales. A partial list of sources used: [1] B. Hille. Ion channels of excitable membranes. Sinauer, Sunderland, Mass., 3rd ed edition, 2001. [2] D. Murray. Mathematical Biology. Springer, Berlin, 1993. [3] J. J. B. Jack, D. Noble, and R. W. Tsien. Electric current flow in excitable cells. Oxford: Clarendon Press, 1975. [4] E. M. Izhikevich. Dynamical systems in neuroscience. MIT press, 2007. [5] B. Sakmann and E. Neher. Single-Channel Recording. Springer, 2009. [6] Various physiological and biophysical articles in professional journals
DOI: 10.6084/m9.figshare.28175300.v2
title: Optimising synthetic cystic fibrosis sputum media for growth of non-typeable <i>Haemophilus influenzae</i>: Data supplement & Supplemtary Files 1, 4 and 5

description: Non-typeable Haempophilus influenzae (NTHi) is an early pathogen isolated from the lungs of children with cystic fibrosis (CF). However, its role in the progression of CF lung infection is poorly understood. Additionally, whether it forms biofilms in the lungs of people with CF is an open question. The development of synthetic cystic fibrosis sputum media has given key insights into the microbiology of later CF pathogens, Pseudomonas aeruginosa and Staphylococcus aureus, through replicating the chemical composition of CF sputum. However, growth of NTHi in these media has not previously been reported. We show that NTHi grows poorly in three commonly-used variants of synthetic cystic fibrosis sputum media commonly used to induce in vivo-like growth of P. aeruginosa and S. aureus (SCFM1, SCFM2 and SCFM3). The addition of NAD and hemin to SCFM1 and SCFM2 promoted the planktonic growth and biofilm formation of both laboratory and clinical NTHi isolates, and we were able to develop a modified variant of SCFM2 that allows culture of NTHis. We show that NTHi is unable to be identified in an established ex-vivo model of CF infection, which uses SCFM and porcine bronchiolar tissue. This may in part be due to the presence of endogenous bacteria on the pig lung tissue which outcompete NTHi, but the lack of selective agar to isolate NTHi from endogenous bacteria, and the fact that NTHi is an exclusively human pathogen, make it hard to conclude that this is the case. Through spiking modified SCFM2 with filter sterilized lung homogenate, biofilm growth of clinical NTHi isolates was enhanced. Our results highlight that there are crucial components present in the lung tissue which NTHi require for growth, that are not present in any published variant of SCFM from the Palmer et al. 2007 lineage. Our results may inform future modifications to SCFM recipes to truly mimic the environment of CF lung sputum, and thus, to facilitate study of a wide range of CF pathogens.
DOI: 10.6084/m9.figshare.19295132.v1
title: Data for "Garnet growth and diffusion zoning in the Late Paleoproterozoic metamorphism, North Altyn, southeastern Tarim Craton: Implication for a long-lived hot orogen"

description: Table S1 EMPA data for garnet and other mineralsTable S2 LA-ICPMS zircon U-Pb and trace element result<br>
DOI: 10.6084/m9.figshare.22137563.v1
title: Soil P crop requirements (wasted, maintenance and deficit) for each country and continent

description: Dataset summarizes areas above and below crop-specific thresholds for each crop and country/continent. Calculations for fertiliser requirements are also given.
<br>
GEO referenced TIFF files are als given for individual crops and for crop grouped by Olsen P threshold.
DOI: 10.6084/m9.figshare.10279454.v1
title: Global gridded maps of crop root distributions

description: We constructed geographically gridded data global maps of maximum<i> </i>and mean root depth in agricultural land based upon the crop and pasture distribution maps in Monfreda et al. (2008) and Ramankutty et al. (2008). The maps are relative to year 2000 and have a resolution of 5 arc-min (i.e., approximately 10 km at the equator). <br><b>Recommended Citation</b>Maggi, F., la Cecilia, D., Tang, F. H.M, and McBratney, A. (2020). The global environmental hazard of glyphosate use, Science of the Total Environment,https://doi.org/10.1016/j.scitotenv.2020.137167<br><b>References</b><br> Monfreda, C., N. Ramankutty, and J. A. Foley (2008), Farming the planet: 2. Geographic distribution of crop areas, yields, physiological types, and net primary production in the year 2000, Global Biogeochem. Cycles, 22, GB1022, doi:10.1029/2007GB002947 <br>Ramankutty, Navin, Evan, Amato T, Monfreda, Chad, & Foley, Jonathan A. 2008. Farming the planet: 1. Geographic distribution of global agricultural lands in the year 2000. Global Biogeochemical Cycles, 22(1). <br><br><br>
DOI: 10.6084/m9.figshare.13456382.v1
title: Ruebel et al. Oocyte Maturation Failure

description: Study of transcriptome changes shared between human and monkey oocytes that fail to mature.<br>
DOI: 10.6084/m9.figshare.24408037.v1
title: ERR5021550.bam

description: ///////
DOI: 10.6084/m9.figshare.22637380.v1
title: Distance Learning: Russian Experience

description: The article discusses innovative approaches to education on the example of the introduction of distance learning in Russia, the main forms of its organization, the necessary means, areas of application, advantages, and disadvantages. The authors note that distance learning is becoming more in demand, has many advantages, and therefore, will develop. For its development, the modern education system in Russia has all the possibilities, both technically and intellectually. But we must not forget about the shortcomings of distance learning, which must be eliminated in the process of its development and improvement. Particular attention is paid to the legal regulation of distance education.
DOI: 10.6084/m9.figshare.3544121.v1
title: Appendix B. Simulation results with presence–absence data.

description: Simulation results with presence–absence data.
DOI: 10.6084/m9.figshare.7803101.v1
title: Adrenomedullin insufficiency alters tubal macrophage activity: a pathophysiologic explanation of tubal ectopic pregnancy

description: The figures includes: 1. Flow cytometry identification of isolated human fallopian tube macrophages; 2. Flow cytometry identification of M1 macrophages derived from human blood; 3. In vitro tubal implantation model demonstration; 4. Immunofluorescent staining of the fallopian tube frozen sections to identify the tubal macrophage phenotype;5. Immunofluorescence identification of RAMP3 expression in tubal macrophages.The tables includes:1.Antibodies used for immunohistochemistry, immunofluorescent staining and western-blotting; 2. Primers for RT-qPCR; 3.H-SCORE of ADM and implantation-associated molecules in fallopian tubes of control, salpingitis and TEP.<b> </b>
DOI: 10.6084/m9.figshare.22650964.v6
title: Seven day, free-living pedometry data from a rural, African setting

description: The data consists of individual-level (anonymised) 7-day, free-living pedometry data for 789 participants (female = 516, males = 273) between the ages 14-96 years, from a rural African setting (Dikgale Health and Demographic Surveillance System site, Limpopo Province, South Africa). A number of additional variables are included (age, sex, village, month/season, anthropometric, resting heart rate & blood pressure, activity energy expenditure).
DOI: 10.6084/m9.figshare.27263496.v1
title: Leveraging LLM-Respondents for Item Evaluation: a Psychometric Analysis

description: This dataset contains 1,165 rows, each corresponding to a respondent (including LLM-generated respondents) in our study. It contains 21 columns. The first column, "Generating Model," specifies the model or source (e.g., "Human") that generated the responses. The remaining 20 columns (Q1 to Q20) indicate the correctness of answers to 20 college algebra questions for each respondent. <b>"TRUE"</b> means the respondent answered correctly, <b>"FALSE"</b> indicates an incorrect answer, and <b>N/A</b> represents missing data (i.e., no response). The dataset includes responses from seven different generating models:<b>Human</b>: 265 responses<b>GPT-4</b>: 150 responses<b>GPT-3.5</b>: 150 responses<b>Llama 3</b>: 150 responses<b>Llama 2</b>: 150 responses<b>Gemini</b>: 150 responses<b>Cohere</b>: 150 responses
DOI: 10.6084/m9.figshare.21946187.v2
title: Ecological dynamics of moa extinctions reveal convergent refugia that today harbourflightless birds - Supplementary Materials

description: This repository provides detailed methods on how we used spatially-explicit population models and pattern-oriented modelling techniques to reconstruct the extinction dynamics of six species of moa following Polynesian colonisation of New Zealand. The example scripts and data recapitulate a subset of the thousands of moa/climate/harvest simulation models that we developed. The scripts are numbered and need to be followed in order to generate the appropriate data and simulations.
DOI: 10.6084/m9.figshare.25062866.v2
title: Open Access Books Publisher Info.xlsx

description: Open book publishers should provide to prospective authors easily findable information on cost, licensing, reproduction, and other specifics. While some publishers readily provide this information, others do not. The data presented here lists open books publishers and the specifics they provide. In most cases, information was found at the publisher's author-facing webpages. In other cases, this project's authors emailed for further details or clarification. Transparency has been color-coded as: green (information is findable on publisher webpages), yellow (information was obtained via personal communication with publisher), and red (information is not findable on publisher webpages).
DOI: 10.6084/m9.figshare.6359318.v1
title: Prevalence and risk factors of occult Hepatitis C infections in blood donors from Mexico City

description: The circulatory system is the main mechanism for transmission of the Hepatitis C Virus (HCV). A new class of HCV infections, Occult HCV infection (OCI), is defined as the presence of HCV-RNA in hepatocytes with the absence of HCV in the serum/plasma utilizing current laboratory assays. Different groups have reported the prevalence of OCI; however, its associated risk factors have not been established. In Mexico, there are no reports about OCI, so the objective of our study was to determine the prevalence of OCI in total blood donors in Mexico City, as well as its associated risk factors.
DOI: 10.6084/m9.figshare.24076680.v1
title: Data and analysis for tropical cyclone track forecast errors using PPVI

description: This repository contains the following:Piecewise Potential Vorticity Inversion (PPVI) codePost-processed analyzed filesPlotting scriptsFiguresThe original PPVI code was provided by Professor Chun-Chieh Wu's group at National Taiwan University which was used in the publicationWu, C., T. Huang, W. Huang, and K. Chou, 2003: A New Look at the Binary Interaction: Potential Vorticity Diagnosis of the Unusual Southward Movement of Tropical Storm Bopha (2000) and Its Interaction with Supertyphoon Saomai (2000). Mon. Wea. Rev., 131, 1289–1300, https://doi.org/10.1175/1520-0493(2003)131&lt;1289:ANLATB&gt;2.0.CO;2The PPVI code is written in Fortran 90, Python, and C-Shell and has been modified by Jan-Huey Chen and Tyler Barbero. See "Documentation.md" for a detailed guide of the PPVI code. Post-processed files are in .nc and .txt formats. Python scripts are provided to reproduce each figure in the current publication.<br>How to cite the current publication:Barbero, T. W., Bell, M. M., Chen, J.-H., & Klotzbach, P. J. (2024). A potential vorticity diagnosis of tropical cyclone<br>track forecast errors. <i>Journal of Advances in Modeling Earth Systems</i>, 16 , e2023MS004008. https://doi.org/10.1029/2023MS004008