cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tmrs92j7pv.36
title: COVID-19: Time Series Datasets India versus World

description: This dataset consists of COVID-19 time series data of India since March 24th, 2020. The data set is for all the States and Union Territories of India and is divided into five parts, including i) Confirmed cases; ii) Death Count; iii) Recovered Cases; iv) Temperature of that place; and v) Percentage humidity in the region. The data set also provides basic details of confirmed cases and death count for all the countries of the world updated daily since 30 January 2020. The end user can contact the corresponding author (Rohit Salgotra : nicresearchgroup@gmail.com) for more details. . The Authors can Refer to and CITE our latest Papers on COVID: 1. Salgotra, Rohit, Mostafa Gandomi, and Amir H. Gandomi. "Time Series Analysis and Forecast of the COVID-19 Pandemic in India using Genetic Programming." Chaos, Solitons & Fractals (2020): 109945. 2. Salgotra, Rohit, Mostafa Gandomi, and Amir H. Gandomi. "Evolutionary modelling of the COVID-19 pandemic in fifteen most affected countries." Chaos, Solitons & Fractals 140 (2020): 110118. 3. Mousavi, Mohsen, et al. "COVID-19 Time Series Forecast Using Transmission Rate and Meteorological Parameters as Features." IEEE Computational Intelligence Magazine 15.4 (2020): 34-50. . [Dataset is updated Once a Week]
DOI: 10.17632/5c66khz22k.1
title: Candidate RNA Aptamers Against T3 Receptor - Supplementary PDB Files

description: The PDB files in this dataset belong to the manuscript authored by Jokar, Pirouzfar, et al. This manuscript indicates an approach to predict candidate RNA aptamers for T3 receptor, which can be synthesized and evaluated experimentally in future studies.
DOI: 10.17632/rkj7y7jfz7.1
title: LINF_050014100

description: CPSF A subunit region containing protein; Leishmania infantum
DOI: 10.17632/jjwsfz9722.1
title: LINF_050014700

description: glutaminyl cyclase; Leishmania infantum
DOI: 10.17632/sb8h3hw84k.2
title: CTSC-NETs

description: Tumor-derived CTSC promotes breast-to-lung metastasis by regulating neutrophil recruitment and Neutrophil Extracellular Trap (NET) Formation in metastasis niches
DOI: 10.17632/96kgvh7yws.1
title: LINF_050014800

description: dipeptidyl-peptidase III | metallo-peptidase - Clan M - Family M49; Leishmania infantum
DOI: 10.17632/5c7cjgm952.1
title: FSW of AMC

description: Welding by Triangular tool
DOI: 10.17632/bnm84ghmvx.1
title: Co-condensation between transcription factor and coactivator p300 modulates transcriptional bursting kinetics. Ma et al.

description: The coactivator p300/CBP regulates genes by facilitating the assembly of transcriptional machinery and by acetylating histones and other factors. However, it remains mostly unclear how both functions of p300 are dynamically coordinated during gene control. Here, we showed that p300 appears to orchestrate two functions through the formation of dynamic co-condensates with certain transcription factors (TFs), which is mediated by the interactions between the TF’s trans-activation domain (TAD) and the intrinsically disordered regions (IDRs) of p300. Co-condensation enables spatially defined, all-or-none activation of p300’s catalytic activity, priming the recruitment of other coactivators including Brd4. We further revealed that co-condensation modulates transcriptional initiation rate and burst duration of target genes, underlying nonlinear and cooperative gene regulatory functions. Intriguingly, such modulation is consistent with how p300 shapes transcriptional bursting kinetics globally. Together, complementary lines of evidence suggest a new p300-meidated gene control mechanism, where TF and p300 co-condensation contributes to transcriptional bursting regulation and cooperative gene control.
DOI: 10.5281/zenodo.4415341
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.17632/wnf5jwzp3c.3
title: Dataset on Helically Coiled Oscillating Heat Pipe (HCOHP)

description: This dataset contains raw primary temperature data obtained from the three HCOHPs charged with ethanol, methanol, and deionized water respectively and tested in the laboratory using three different heat inputs. The maximum heat input element temperatures were 100°C, 125°C and 192°C, for test Run 1, 2 and 3, respectively. The temperature data were obtained from three Omega K-type thermocouples attached to each condenser and evaporator of the HCOHP respectively, two attached to the adiabatic sections, and two attached to the inner and outer surfaces of the cylindrical copper vessel for the heat transfer. The other dataset is derived from the average temperatures from the raw primary temperature data. Here, relevant equations for the determination of the heat flux, power input, thermal contact resistance and overall thermal resistance was used. The data are presented on six separate Excel files. The first three files are captioned HCOHP Primary Data – Run 1, HCOHP Primary Data – Run 2, and HCOHP Primary Data – Run 3 representing raw primary temperature data for the three HCOHPs for each test run. The second three Excel files are captioned HCOHP Derived Data – Run 1, HCOHP Derived Data – Run 2, and HCOHP Derived Data – Run 3 represent the derived data obtained from the average raw primary temperature data for each test run. In the Excel files EOHP, MOHP and WOHP represents the ethanol charged HCOHP, methanol charged HCOHP and deionized water charged HCOHP, respectively.
DOI: 10.17632/w764p2jwkn.1
title: Penang Island Mangrove Benthic Foraminifera

description: Data of environmental parameters and benthic foraminifera species recorded in Penang Island mangroves: Teluk Tempoyak mangrove (TT), Pulau Betong mangrove (PB) and Kuala Sungai Pinang mangrove (KSP). Table A.1. Details of each sampling points at each mangrove forests. Table A.2. Census data for live benthic foraminiferal assemblages Table A.3. Census data for dead benthic foraminiferal assemblages Table A.4. Environmental parameters measured at each mangrove locations. Table A.5. Relative abundance of benthic foraminiferal species at each mangrove locations.
DOI: 10.17632/vw5f8vz9gh.1
title: Characterization of the complete mitochondrial genome of the estuarine benthic ribbon worm, Yininemertes pratensis (Sun and Lu, 1998) (Nemertea: Lineidae)

description: The complete mitochondrial genome sequence of estuarine ribbon worm, Yininemertes pratensis (Nemertea: Lineidae) is firstly determined in this study. A total length of newly determined mitogenome was 15,616 bp including 13 protein-coding genes, two rRNA genes, 24 tRNA genes, and a non-coding region of 571 bp. The phylogenetic position of Y. pratensis was examined by Neighbor-joining analysis using concatenated 13 protein-coding genes with nine selected nemertean species. Yininemertes pratensis was nested into family Lineidae and closely related to Notospermus geniculatus among selected species. The newly determined mitogenome sequence will be useful for better understanding not only for further phylogenetic study but also ecological study of this species.
DOI: 10.17632/7jvdd7jwks.1
title: Parasite presence induces gene expression changes in an ant host related to immunity and longevity

description: Most species are either parasites or exploited by parasites, making parasite-host interactions a driver of evolution. Parasites with complex life cycles often evolve strategies to facilitate transmission to the definitive host by manipulating their intermediate host. Such manipulations could explain phenotypic changes in the ant Temnothorax nylanderi, the intermediate host of the cestode Anomotaenia brevis. In addition to behavioral and morphological alterations, infected workers exhibit increased survival, comparable to that of queens, which live up to two decades. We used transcriptomic data from cestodes and ants of different castes and infection status to investigate the molecular underpinnings of phenotypic alterations in infected workers, and whether the extended lifespan of queens and infected workers has a common molecular basis. To this end we sequenced the abdominal RNA of infected and uninfected ants of parasitized nests and queens and workers from unparasitized nests and assembled a transcriptome using StringTie. After filtering the transcriptome for those transcripts with an ORF greater or equal than 150 bp and filtering the gene count matrix for only those genes that had at least 5 counts in at least 3 samples, we first conducted a Principal Component Analysis. We tested each PC for its association with infection status and for the significant PCs we extracted the loadings of each gene (dataset S1). Moreover, we analyzed gene expression using DESeq2, comparing infected workers with their uninfected nestmates and on the other hand queens and their workers from unparasitized nests. The significant upregulated genes in each group can be found in the dataset S2. GO enrichment was performed using topGO on both the genes and their loadings on PC2 using a Kolomogorov-Smirnov test and the upregulated genes compared to the whole transcriptome using Fisher's exact tests (dataset S3). Afterward, we analyzed the overlap between genes upregulated in infected workers and in queens. Infected workers and queens commonly upregulated only six genes, one of them with a known anti-aging function. Our text-mining approach revealed that both groups overexpressed immune genes, although not the same ones. Our findings suggest that the lifespan extension of infected workers is not achieved via the expression of queen-specific genes. To be able to filter the abdominal RNA sequences of infected workers from cestode RNA, we additionally sequenced RNA of 320 cysticercoids and de novo assembled a transcriptome of A. brevis. The analysis of the cestodes’ transcriptome revealed dominant expression of genes of the mitochondrial respiratory transport chain indicating an active metabolism and shedding light on the physiology of the parasite in its cysticercoid stage (dataset S4).
DOI: 10.17632/6sfs79ffc7.1
title: Health-related quality of life, depression, and self-esteem in patients with androgenetic alopecia

description: Table S1. Search strategy
DOI: 10.17632/9cv9s78tg4.1
title: Supplementary material for the manuscript "Association between atopic dermatitis and nasal polyposis: what is the evidence?"

description: Supplementary material including online-only text, Table E1 and Figure E1 on the association between atopic dermatitis and nasal polyposis
DOI: 10.17632/gncg57p5x9.2
title: Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution: Supplementary Data

description: Supplementary data for the study "Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution" which utilises single cell RNA-sequencing (scRNA-seq) and spatial transcriptomics (ST) to characterise the origins of human intestinal development between 8 and 22 post conceptual weeks. This supplementary data contains analysed sequencing data that was too large for main publications and details data that was used for comparisons of: cell type marker genes; ST varying genes; Transcription factor (TF) module nodes; Human Phenotype Ontology (HPO) disease comparisons across time and cell clusters; cell cluster comparisons and Gene Ontology Analysis. Specific content: A) An excel file with tabs of supplementary data (overview in first tab) including: 1 Sample overview 2 Endothelial Markers 3 Epithelial Markers 4 Fibroblast Markers 5 Immune Markers 6 Muscle Markers 7 Myofibroblast & Mesothelium markers 8 Neural markers 9 Pericyte Markers 10 Secretory epithelium markers 11 Compartment Markers 12 ST Distance varying genes 13 TF Tree Node Markers 14 TF Location Time Compartment 15 HPO Genes Time Varying 16 HPO Genes Cluster Specific 17 S2 Colon vs TI 18 S2 Time Course 19 Stem Cells TI vs Colon 20 Stem cells vs Stem progenitor 21 Stromal 4 differences 22 CITE-Seq Antibody Sequences 23 Neural GO BP 24 Morphogen modules 25 GO Terms ST dist genes B)Images of ST segments (n=8 tissue segments with low resolution and high resolution images of each)
DOI: 10.15161/oar.it/73383
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.3712807
title: Fuji-SfM dataset

description: The Fuji-SfM dataset includes: (1) a set of 288 colour images and the corresponding annotations (apples segmentation masks) for training instance segmentation neural networks such as Mask-RCNN; (2) a set of 582 images defining a motion sequence of the scene which was used to generate the 3D model of 11 Fuji apple trees containing 1455 apples by using SfM; (3) the 3D point cloud of the scanned scene with the corresponding apple positions ground truth in global coordinates.<br> This data allows the development, training, and test of fruit detection algorithms either based on RGB images, on coloured point clouds or on the combination of both types of data.
description: This work was partly funded by the Secretaria d'Universitats i Recerca del Departament d'Empresa i Coneixement de la Generalitat de Catalunya (grant 2017 SGR 646), the Spanish Ministry of Economy and Competitiveness (project AGL2013-48297-C2-2-R) and the Spanish Ministry of Science, Innovation and Universities (project RTI2018-094222-B-I00). Part of the work was also developed within the framework of the project TEC2016-75976-R, financed by the Spanish Ministry of Economy, Industry and Competitiveness and the European Regional Development Fund (ERDF). The Spanish Ministry of Education is thanked for Mr. J. Gené's pre-doctoral fellowships (FPU15/03355). We would also like to thank Nufri (especially Santiago Salamero and Oriol Morreres) and Vicens Maquinària Agrícola S.A. for their support during data acquisition, and Ernesto Membrillo and Roberto Maturino for their support in dataset labelling.
DOI: 10.17632/rtj27kd79v.1
title: Supplement: Stuttering and incident type 2 diabetes

description: This is the supplement for the manuscript titled: "Stuttering and incident type 2 diabetes: a population-based study of 2.2 million adolescents"
DOI: 10.17632/96xg3wmppf.1
title: Data on SiC-based bundle lifetime variability: the insufficiency of external phenomena affecting the flaw size

description: The data presented here correspond to a comprehensive analysis on lifetime variability for SiC-based bundle. These data are associated to the supplementary communication to https://doi.org/10.1016/j.ijfatigue.2020.106072
DOI: 10.21258/1742262
title: Swiss national forest inventory - Result table No. 897460
DOI: 10.17632/rtnwsjgtr9.1
title: Data for: Using soil hydromorphic degree for adjusting steady-state water table simulations along catenas in semiarid Russia

description: This a analytical derivation of the equation for the hillslope water storage for the steady state case
DOI: 10.21258/1753503
title: Swiss national forest inventory - Result table No. 897872
DOI: 10.17632/23yrzbzr3m.1
title: Optimized airfoils based on different flight missions

description: Optimization results of the 216 airfoil design problems in Paper: On Deep-learning-based Geometric Filtering in Aerodynamic Shape Optimization.
DOI: 10.17632/rt2gmzbvmz.1
title: Tetraploidwheat_220Indx21347SNPs

description: Filtered SNP variants of 220 tetraploid wheat accessions in VCF format.
DOI: 10.17632/s5m2hc7bzf.1
title: File stl for mobile incubator

description: this stl for adaptor of flask lid
DOI: 10.21258/1767692
title: Swiss national forest inventory - Result table No. 899194
DOI: 10.21258/1761898
title: Swiss national forest inventory - Result table No. 892830
DOI: 10.5281/zenodo.4411989
title: Revisiting the impact of rapid releases on software development activities

description: This repository contains the data used in our work entitled ["Revisiting the impact of rapid releases on software development activities"]
DOI: 10.21258/1724347
title: Swiss national forest inventory - Result table No. 899418
DOI: 10.17632/xbvcsdp86v.1
title: Intratumoral IL-12 delivery empowers CAR-T cell immunotherapy in a pre-clinical model of glioblastoma

description: Giulia Agliardi*, Anna Rita Liuzzi*, Alastair Hotblack, Donatella De Feo, Nicolás Núñez, Cassandra L. Stowe, Ekaterina Friebel, Francesco Nannini, Lukas Rindlisbacher, Thomas A. Roberts, Rajiv Ramasawmy, Iwan P. Williams, Bernard M. Siow, Mark F. Lythgoe, Tammy L. Kalber, Sergio A. Quezada, Martin A. Pule, Sonia Tugues, Karin Straathof§ and Burkhard Becher§. *These authors contributed equally § These authors contributed equally Corresponding authors: Burkhard Becher. E-Mail: becher@immunology.uzh.ch Karin Straathof. E-Mail: k.straathof@ucl.ac.uk Glioblastoma multiforme (GBM) is the most common and aggressive form of primary brain cancer, for which effective therapies are urgently needed. Chimeric antigen receptor (CAR)- based immunotherapy represents a promising therapeutic approach, but it is often impeded by highly immunosuppressive tumor microenvironments (TME). Here, in an immunocompetent, orthotopic GBM mouse model, we show that CAR-T cells targeting tumorspecific epidermal growth factor variant III (EGFRvIII) alone fail to control fully established tumors but, when combined with a single, locally delivered dose of IL-12, achieve durable antitumor responses. IL-12 not only boosts cytotoxicity of CAR-T cells, but also reshapes the TME, driving increased infiltration of proinflammatory CD4+ T cells, decreased numbers of regulatory T cells (Treg), and activation of the myeloid compartment. Importantly, the immunotherapy-enabling benefits of IL-12 are achieved with minimal systemic effects. Our findings thus show that local delivery of IL-12 may be an effective adjuvant for CAR-T cell therapy for GBM.
DOI: 10.17632/ctz4vgk9d7.1
title: Quiñones et al. EARLY VISUAL PROCESSING AND PERCEPTION PROCESSES IN OBJECT DISCRIMINATION LEARNING

description: This data consiste of two files: 1. DiscriminationPractice that contains the d prime values from two groups of participants across 6 sessions of same/different discrimination practice. Brief (100 ms presentation time) and long (1000 ms presentation time) 2. Evaluation that contains the responses of two groups of participants in the evaluation sessions: memory (OLD/NEW task) and perceptual(SAME/DIFFERENT task).
DOI: 10.17632/rxx4nty5kg.1
title: Dermoscopy-assisted hair pull test: a helpful adjunct to trichoscopy in diagnosis and management of alopecias

description: Supplementary material for the research letter "Dermoscopy-assisted hair pull test: a helpful adjunct to trichoscopy in diagnosis and management of alopecias"
DOI: 10.17632/z9bm2ds8nv.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 1

description: Part 1/10 Description provided in dataset linked below.
DOI: 10.17632/wrmnj7n57d.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 2

description: Part 2/10 Description provided in the dataset linked below.
DOI: 10.17632/vjd63gz9wf.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 3

description: Part 3/10 Description provided in the dataset linked below.
DOI: 10.17632/p5yvtms2yx.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 4

description: Part 4/10 Description provided in the dataset linked below.
DOI: 10.17632/5j5s7bd2kb.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 5

description: Part 5/10 Description provided in the dataset linked below.
DOI: 10.21258/1767041
title: Swiss national forest inventory - Result table No. 891975
DOI: 10.17632/j5d2bfp4dc.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 6

description: Part 6/10 Description provided in the dataset linked below.
DOI: 10.17632/cscvh2xv2z.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 7

description: Part 7/10 Description provided in the dataset linked below.
DOI: 10.17632/89c7xbxj6x.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data 8

description: Part 8/10 Description provided in dataset linked below.
DOI: 10.17632/zkhbzxt78j.1
title: Infiltrating Lymphocytes in Follicular Lymphoma - additional data 9

description: Part 9/10 Description provided in the dataset linked below.
DOI: 10.17632/nb46s9trx3.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma -Nuclear annotations

description: Annotations ------------- In a follicular lymphoma dataset, annotations are provided for nuclear segmentation. In a set of 41 small patches the outlines have been drawn manually for 69780 nuclei. A patch from the DAPI channel and corresponding label are given as .tif images. Labels are 16-bit integer mask arrays where all pixels belonging to each nucleus are randomly assigned an integer number. Some patches contain no stained nuclei, as negative controls. Additional information on preparation of this data is provided in the dataset linked below.
DOI: 10.17632/sxxfr3hf78.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - additional data H&E

description: Additional data H&E ---------------------- A single section of the follicular lymphoma tissue microarray, stained with Hematoxylin and Eosin (H&E) . Scanned at 40x and presented with a .scn file format (compatible with QuPath open source software). Additional information is provided on the dataset linked below.
DOI: 10.17632/2fz5gndzzf.1
title: Tumour Infiltrating Lymphocytes in Follicular Lymphoma - Spectral library

description: Spectral library ---------------- Contains the raw .im3 images files necessary to build a spectral library, using inForm 2.4 (Akoya Biosciences) software. Each file contains the spectrum of a single fluorophore: • DAPI (nuclear) • 650 fluorophore signal for CD68 marker (membrane) • 570 fluorophore signal for CD21 marker (membrane) • 540 fluorophore signal for CD8 marker (membrane) • 690 fluorophore signal for PD1 marker (membrane) • 620 fluorophore signal for CD4 marker (membrane) • 520 fluorophore signal for FOXP3 (nuclear) • Auto-fluorescence Additional information provided in the dataset linked below.