DOI: 10.18150/cnrodw
title: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic data

description: Title of Dataset: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic dataThe datasets contain data from RNA-seq analysis of 9 libraries obtained from narrow-leafed lupin (Lupinus angustifolius) roots grown under physiological conditions, 15-hour hypoxia and 6-hour reoxygenation, described in publication 'Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules'.Authors:Dawid Jakub Kubiak, 1 (dawidk@doktorant.umk.pl)Michal Wojciech Szczesniak, 2 Institutions:1. Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100, Torun, Poland2. Institute of Human Biology and Evolution, Faculty of Biology, Adam Mickiewicz University, Poznan 61-614, PolandDate of data collection: 2023Geographic location of data collection: PolandKeywords: stress granules, hypoxia, lupinus, transcriptomeLanguage information: EnglishInformation about funding sources that supported the collection of the data: National Science Center Poland, grant PRELUDIUM; 2022/45/N/NZ9/04015SHARING/ACCESS INFORMATIONLicenses/restrictions placed on the data: CC0DATA & FILE OVERVIEWFile List:1_H_vs_K_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in control versus hypoxia samples in .txt format)2_H_vs_K_down_genes (The file contains the results of the gene ontology analysis performed for dwon-regulated genes in control versus hypoxia samples in .txt format)3_R_vs_H_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in reoxygenation versus hypoxia samples in .txt format)4_R_vs_H_down_genes (The file contains the results of the gene ontology analysis performed for down-regulated genes in reoxygenation versus hypoxia samples in .txt format)5_R_vs_K_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in reoxygenation versus control samples in .txt format)6_R_vs_K_down_genes (The file contains the results of the gene ontology analysis performed for down-regulated genes in reoxygenation versus control samples in .txt format)7_A.thaliana orthologs (File contains orthologues of lupinus angustifolius genes in the model plant A.thaliana in .txt format)8_K-1 (File contains reports summarizing the results of sequencing for control sample in .pdf format)9_H-1 (File contains reports summarizing the results of sequencing for hypoxia sample in .pdf format)10_R-1 (File contains reports summarizing the results of sequencing for reoxygenation sample in .pdf format)METHODOLOGICAL INFORMATIONDescription of methods used for collection/generation of data: All methods are described in the article: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules Dawid Jakub Kubiak, Michal Wojciech Szczesniak, Karolina Ostrowska, Dawid Bielewicz, Susheel Sagar Bhat, Katarzyna Niedojadlo, Zofia Szweykowska-Kulinska, Artur Jarmolowski, Rupert George Fray, Janusz Niedojadlo bioRxiv 2023.12.14.569339; doi: https://doi.org/10.1101/2023.12.14.569339Abbreviation list: K - control condition, H - 15h hypoxia, R - 15h hypoxia followed by 6h reoxygenation