cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26112376.v2
title: Impacts of repeated photochemical and microbial processes: Selectively shaping of the dissolved organic matter pool and the microbial community

description: Photochemical and microbial degradation are the two main removal processes of marine dissolved organic matter (DOM). However, the combined and repeated effects of irradiation and biodegradation on DOM remains poorly resolved due to their complex interactions. In this study, we investigated the repeated effects of photodegradation and biodegradation on the molecular composition of DOM and the microbial community in seawater collected off Xiamen Island, China. Our study overall demonstrated the selective impacts on the DOM pool and microbes by photochemical and microbial degradation. Photodegradation resulted in the loss of fluorescent (both protein- and humic-like), the enrichment of aliphatic and nitrogen-containing compounds, and an increase in microbial diversity. However, biodegradation drove changes in key molecules and enhanced the contribution of alicyclic compounds and aromatic compounds containing carboxyl/ester functional groups. Network analysis demonstrated the importance of irradiation adapted (i.e., <i>Methylophagaceae</i>) and<i> </i>non-irradiation adapted (i.e., <i>Alteromonadaceae</i>) microbes in the transformation process among the key molecules through potentially (de)methylation and (de)oxidation, respectively. Our findings distinguish the selective contributions of irradiation and biodegradation processes and clearly emphasize the importance of studying how photochemical and biological processes jointly shape the DOM pool.
DOI: 10.6084/m9.figshare.29094302.v1
title: Table of Article Findings "Employability Skills" in 2020 to 2024

description: Article Findings "Employability Skills" in 2020 to 2024
DOI: 10.6084/m9.figshare.1473092.v4
title: NLR-B30.2 online supplement

description: Online supplementary material for manuscript on the evolutionary history of the NLR-B30.2 gene family in zebrafish.
DOI: 10.6084/m9.figshare.28271135.v1
title: Outputs

description: Outputs
DOI: 10.6084/m9.figshare.18131420.v1
title: Callanna Group detrital zircon dataset (Lloyd et al.)

description: This detrital zircon dataset contains U, and Pb istopes ratios, ages, and trace element concentrations for three samples from the Callanna Group, and one from the equivalent Poolamacca Group, of the Adelaide Superbasin in South Australia.<br>Two variants are available, one with functional formulas for use in Excel 2019 or higher, and one with values only.<br><br>Data was obtained via LA-ICP-MS at the University of Adelaide, full methodology can be found in the accompanying artice/pre-print.<br>
DOI: 10.6084/m9.figshare.19130453.v4
title: The parameters of cases in IEEE 30-bus and Polish 2383-bus systems

description: The parameters of the IEEE-30 and Polish2383 bus system
DOI: 10.6084/m9.figshare.21916419.v1
title: Climate change may unleash the ghost of past species’ ecological niches

description: All analyses presented in the article can be replicated using the different R scripts, functions, data and outputs provided.
DOI: 10.6084/m9.figshare.25659150.v9
title: Replication Package

description: This package contains pre-survey, focus group, questionnaire answers, and follow-up study questions used in "Process Smells in Practice: An Evaluative Case Study".
DOI: 10.6084/m9.figshare.4789867.v1
title: Young Researcher of the Month.docx

description: I was nominated for the University of Glasgow's college of Medical, Veterinary and Life Science's Young Researcher of the Month Award. <br>https://www.uofgcce.org/single-post/2016/02/26/Young-Researcher-of-the-Month<br>
DOI: 10.6084/m9.figshare.25219616.v1
title: Energy Efficiency Experimental Dataset

description: 768 experimental datasets from the literature, with eight input parameters and two output parameters (cooling load (CL) and heating load (HL)).
DOI: 10.17632/6n3xn4wpsj
title: Sustainable Ecotourism Indicators 

description: Sustainable ecotourism has become a strategy to balance tourism growth with environmental and socio-cultural considerations. This paper investigates indicators for sustainable ecotourism using an integrated methodology combining the Fuzzy Delphi technique and the Fuzzy DEMATEL approach. The study covers six dimensions: environmental, social, cultural, economic, political, and intrinsic. The environmental dimension explores indicators of natural resource conservation, biodiversity protection, and environmental impact mitigation.
DOI: 10.6084/m9.figshare.5946814.v1
title: Pterygosomatidae_Pimeliaphilus_Arc183_dors_60x_Leica_TumGU_p4

description: Original image stacks of the larval parasitic mite found in Early Cretaceous (Albian) Archingeay-Les Nouillers (= Font-de-Benon quarry) fossil resin locality.<br>Material - Inclusion in opaque, light-brown piece of fossil resin trimmed to an approximate parallelepiped 0.5x0.5x1.5 mm and polished on four sides. Housed in the amber collection of the Geological Institute and Museum of the University of Rennes, France, with collection number IGR.ARC.183. Photographed in temporary glycerol mounts.<br>Imaging: Compound microscopes Nikon E-800, Zeiss AxioImager A2 and Leica DM 2500 with water-immersion (Nikon, 40x and 60x), dry and oil-immersion (Leica, Zeiss) brightfield, polarized and differential interference contrast and incident illumination were used. Stacks of images, comprising multiple focal planes, were obtained with digital cameras Nikon D 7000 on Nikon microscope, Zeiss Axiocam 506 color on Zeiss microscope and Leica DFC 450 on Leica microscope. Stacks were corrected for colour, brightness and noise with Adobe Lightroom, then exported to .jpg.<br><br>Microscope, illumination type and magnification are recorded in the folder title. Scale bars are provided along with images. Note that scale bar image is to be scaled 2x when used with files containing x0.5 in the name.<br>
DOI: 10.6084/m9.figshare.12238049.v1
title: ASV table containing counts and taxonomic identity of all detected ASVs in each sample.

description: This table contains ASV counts and taxonomic identity of all detected ASVs in each sample used in the data descriptor "Soil bacterial community structures in relation to different oil palm management practices". In addition to the taxonomy, the tax id, length of fragment, query percentage identity, query coverage and e-value are shown.
DOI: 10.6084/m9.figshare.19550989.v1
title: Table S11.xlsx

description: Download links for sequence data at the European Nucleotide Archive.
DOI: 10.6084/m9.figshare.23607651.v1
title: patient23.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.23918625.v1
title: Figure3 raw data

description: Figure3 raw data, including mHap format file and index file.
DOI: 10.6084/m9.figshare.28175300.v1
title: Optimising synthetic cystic fibrosis sputum media for growth of non-typeable <i>Haemophilus influenzae</i>: Data supplement & Supplemtary Files 1, 4 and 5

description: Non-typeable Haempophilus influenzae (NTHi) is an early pathogen isolated from the lungs of children with cystic fibrosis (CF). However, its role in the progression of CF lung infection is poorly understood. Additionally, whether it forms biofilms in the lungs of people with CF is an open question. The development of synthetic cystic fibrosis sputum media has given key insights into the microbiology of later CF pathogens, Pseudomonas aeruginosa and Staphylococcus aureus, through replicating the chemical composition of CF sputum. However, growth of NTHi in these media has not previously been reported. We show that NTHi grows poorly in three commonly-used variants of synthetic cystic fibrosis sputum media commonly used to induce in vivo-like growth of P. aeruginosa and S. aureus (SCFM1, SCFM2 and SCFM3). The addition of NAD and hemin to SCFM1 and SCFM2 promoted the planktonic growth and biofilm formation of both laboratory and clinical NTHi isolates, and we were able to develop a modified variant of SCFM2 that allows culture of NTHis. We show that NTHi is unable to be identified in an established ex-vivo model of CF infection, which uses SCFM and porcine bronchiolar tissue. This may in part be due to the presence of endogenous bacteria on the pig lung tissue which outcompete NTHi, but the lack of selective agar to isolate NTHi from endogenous bacteria, and the fact that NTHi is an exclusively human pathogen, make it hard to conclude that this is the case. Through spiking modified SCFM2 with filter sterilized lung homogenate, biofilm growth of clinical NTHi isolates was enhanced. Our results highlight that there are crucial components present in the lung tissue which NTHi require for growth, that are not present in any published variant of SCFM from the Palmer et al. 2007 lineage. Our results may inform future modifications to SCFM recipes to truly mimic the environment of CF lung sputum, and thus, to facilitate study of a wide range of CF pathogens.
DOI: 10.6084/m9.figshare.28730597.v1
title: Figure 4 - FRAP raw data

description: Figure 4 - FRAP raw dataElimination of SMC shortens the ParB-HT complex recovery time after photobleaching. Images showing the photobleaching of the ParB-HT complex stained with Janelia Fluor-549 in young vegetative cells of the wild type control and Dsmc strains (DparAB p<sub>nat</sub>parAB-HT, KP006 and DsmcDparAB p<sub>nat</sub>parAB-HT KP007, respectively).
DOI: 10.6084/m9.figshare.8156678.v3
title: Mount Rainier National Park (MORA) | Park and Neighborhood Characteristics

description: This repository contains park and neighborhood data for the Mount Rainier National Park (MORA) in support of the NSF-funded project on Sustainability and Safety in the Pacific West Region National Parks.Internal park data include trail and roads within park boundary as well as yearly data on visitation and staffing for 2003-2013.Neighborhood data include census demographics, county crime, roads, parcel ownership, and land cover.Details provided in NPS PWR Crime Metadata.pdf.
DOI: 10.6084/m9.figshare.8986505.v2
title: Draft genome sequence of the griseofulvin-producing fungus Xylaria flabelliformis strain G536

description: The draft genome of the ascomycete fungus <i>Xylaria flabelliformis</i> (formally known as <i>X. cubensis</i>) was sequenced using Illumina paired-end technology. The assembled genome is 41.2 Mb in length and contains 11,404 genes. This genome will contribute to our understanding of <i>X. flabelliformis </i>secondary metabolism and the organism’s ability to live as a decomposer as well as an endosymbiont.
DOI: 10.6084/m9.figshare.16586234.v1
title: Data of CNN Pulse Classification

description: Real and synthetic data used in the study of "Identification of Near-Fault Impulsive Signals andTheir Initiation and Termination Positions withConvolutional Neural Networks" published in Geosciences (ISSN:20763263).
DOI: 10.6084/m9.figshare.19367051.v1
title: bde-db2.csv.gz

description: This dataset contains bond dissociation energies for 65540 molecules which represent a set of 531244 unique BDEs (enthalpies and free energies). This dataset is broken down into molecule, bond index, fragments and BDEs.
DOI: 10.6084/m9.figshare.874101.v2
title: reddit user posting behavior (mid-2013)

description: This file contains the posting preferences for over 850,000 active reddit users. This sample was taken in mid-2013. This data was used to generate the interactive visualization, "redditviz," and will be analyzed in detail in an upcoming research article. Please cite our paper "Navigating the massive world of reddit" if you use this data in your work. URL: http://arxiv.org/abs/1312.3387 The file is organized as follows: Each line is an entry for an anonymous user. Each user was randomly assigned a unique ID, which is what shows in the first entry of each line. Following the user ID, separated by commas, are the subreddits (i.e., interests) that the user regularly posts in. In order for a user to be considered "active" in that subreddit, they had to post or comment there at least 10 times in their last 1,000 posts and comments.
DOI: 10.6084/m9.figshare.14156408.v3
title: Architectural Design Patterns Images Dataset

description: A comprehensive collection of images classified into various design patterns. It comprises 2,035 architectural design images from fourteen different architectural patterns viz., broker, layered, event-bus, pipe-and-filter, repository, microkernel, microservices, model view controller, peer-to-peer, presentation abstraction controller, client-server, space-based, representational state transfer (REST), and publisher-subscriber. There exist more than 100 design images in each pattern category.<br>
DOI: 10.6084/m9.figshare.12996851.v1
title: Supplementary data for craniometric and genetic analyses of commensal rats in Nusa Tenggara, Indonesia

description: The data presented here comes from a craniometric and genetic study into commensal rodent movements through the Nusa Tenggara island chain, Indonesia. It includes cranial measurements of three rat species - <i>Rattus rattus, Rattus exulans, </i>and <i>Rattus hainaldi,</i> mtDNA haplotypes and nuclear microsatellite genotypes for <i>Rattus rattus, </i>and mtDNA haplotypes for <i>Rattus exulans </i>and <i>Rattus argentiventer </i>from Asia. This dataset is discussed and used in a detailed study published by Louys et al. 2020.
DOI: 10.6084/m9.figshare.14138585.v1
title: Online PBL _combined data

description: This is a set of combined data comparing the learning experiences of pre-clinical medical students in virtual problem-based learning (PBL) at the beginning and end of implementation of virtual PBL.
DOI: 10.6084/m9.figshare.1496573.v1
title: Common Metadata Elements for Cataloging Biomedical Datasets

description: This dataset outlines a proposed set of core, minimal metadata elements that can be used to describe biomedical datasets, such as those resulting from research funded by the National Institutes of Health. It can inform efforts to better catalog or index such data to improve discoverability. The proposed metadata elements are based on an analysis of the metadata schemas used in a set of NIH-supported data sharing repositories. Common elements from these data repositories were identified, mapped to existing data-specific metadata standards from to existing multidisciplinary data repositories, DataCite and Dryad, and compared with metadata used in MEDLINE records to establish a sustainable and integrated metadata schema. From the mappings, we developed a preliminary set of minimal metadata elements that can be used to describe NIH-funded datasets. Please see the readme file for more details about the individual sheets within the spreadsheet.
DOI: 10.6084/m9.figshare.22699303.v1
title: Hypothetical Porous Materials (COF, PPN, Zeolite)

description: Hypothetical porous material structures (COF, PPN, Zeolite) Construct using PORMAKE (https://github.com/Sangwon91/PORMAKE/tree/master/pormake) <br> COF : 0.5M PPN : 0.3M Zeolite : 0.1M
DOI: 10.15468/dl.sk3mqz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((26.9648 28.8496,17.9648 28.8496,17.9648 19.8496,26.9648 19.8496,26.9648 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013406-250525065834625/datasets/export for details.
DOI: 10.17632/fpv6742g7d
title: Data for:Zircon U-Pb dating reveals Late Jurassic gold mineralization in the Jidong district of the northern North China Craton

description: These zircon U-Pb data from felsic to mafic dikes\stocks in Jidong district reveal an independent Late Jurassic Au mineralization and magmatism in the northern North China Craton.
DOI: 10.6084/m9.figshare.1568570.v3
title: Bayesian nonparametric dynamic state space modeling with circular latent states

description: State space models are well-known for their versatility in modeling dynamic systems that arise in various scientific disciplines. Although parametric state space models are well studied, nonparametric approaches are much less explored in comparison. In this article we propose a novel Bayesian nonparametric approach to state space modeling, assuming that both the observational and evolutionary functions are unknown and are varying with time; crucially, we assume that the unknown evolutionary equation describes dynamic evolution of some latent circular random variable. Based on appropriate kernel convolution of the standard Weiner process, we model the time-varying observational and evolutionary functions as suitable Gaussian processes that take both linear and circular variables as arguments. Additionally, for the time-varying evolutionary function, we wrap the Gaussian process thus constructed around the unit circle to form an appropriate circular Gaussian process. We show that our process thus created satisfies desirable properties. For the purpose of inference we develop a Markov-chain Monte Carlo (MCMC)-based methodology combining Gibbs sampling and Metropolis–Hastings algorithms. Applications to a simulated data set, a real wind speed data set, and a real ozone data set demonstrated quite encouraging performances of our model and methodologies.
DOI: 10.6084/m9.figshare.25796431.v1
title: TCRs reactive to YeiH

description: List of TCRs reactive to the YeiH.232-240 antigen presented by HLA-B*27
DOI: 10.6084/m9.figshare.28869176.v1
title: Code and Data for 'Fabrication and testing of lensed fiber optic probes for distance sensing using common path low coherence interferometry'

description: This repository contains code and data to support the paper:Fabrication and testing of lensed fiber optic probes for distance sensing using common path low coherence interferometryRadu-Florin Stancu,<sup>1</sup> Michael Hughes,<sup>1</sup><sup> </sup>Taylor Sanderson,<sup>1 </sup>Manuel Marques,<sup>1</sup> Lyndon da Cruz,<sup>2</sup> Christos Bergeles,<sup>3</sup> and Adrian Podoleanu<sup>1</sup>Applied Optics Group, University of KentMoorfields Eye Hospital, LondonKing’s College London, Robotics and Vision in Medicine Lab, School of Biomedical Engineering & Imaging SciencesContents--------1. ModellingPython code to demonstrate use of Eqn 1 from paper to model fiber probes using coreless and GRIN fiber. 'model.py' contains the function 'grin_model' which models the working distance and focused spot FWHM base on the length of NCF and GRIN fibre. 'model_example_1.py' and 'mode_example_2.py' provide examples of how to use the function to model a particular probe and to explore the parameter space, respectively.2. SputteringRaw data and code to produce Fig. 2 from paper, showing effect of sputtering time on reflectivity.3. Spot AnalysisCode and example data for analysis of focal spots from fiber probes. 'Spot_utilities.py' contains several functions that are useful to help with the analysis, and 'spot_analysis.py' provides an example of how to use them, generating Fig 4 from the paper. The 'data' folder contains a set of spot images as the tip of the probe was moved either side of focus in steps of 50 microns. File names are the distance from the estimated focus in microns.4. A ScansExample A-scans in the 'data' folder were used to generate Fig 6. from the paper. Code to generate the figure is in 'plot_a_scans.py'.5. Distance SensingCode and data to demonstrate extracting distance sensing data from A-scans and to generate Fig. 8 using the algorithm described in Fig. 7. Functions to generate distance measurements are in 'distance_sensing_utilities.py' and an example of how to use this on data in the 'data' folder is in 'distance_sensing_example.py', which generates Fig 8. Code to check axial resolution, as reported in the paper, is also included in this folder in 'resolution_measurement.py'.Running the code----------------Code was tested with Python 3.10.14Packages requirements (tested version shown):numpy 1.26.4matplotlib 3.8.4scipy 1.13.1opencv-python 4.9.0.80PIL 10.3.0
DOI: 10.17632/3jsh4y2bw4
title: Datasets of harmonized risk assessment of grapevine downy mildew and phenological observations in eight Italian regions (2012-2017) 

description: Phytosanitary bulletins released at weekly interval by eight Italian regional plant protection services in the growing seasons 2012-2017 were used to derive an harmonized dataset of grapevine downy mildew infection risk and phenological observations. The downy mildew infection risk (n = 8816) was classified using a 5-point Likert response item ranging from ‘very low’ (1) to ‘very high’ (5) by six independent evaluators with domain expertise in agronomy, phytopathology and agrometeorology. Common criteria were used in the risk assessment, considering i) the presence of disease symptoms in field surveys, ii) the host phenological susceptibility, iii) the weather forecasts in the next week from the bulletin release date, iv) the advice to apply a fungicide treatment and v) the outputs of epidemiological models. The phenological observations are provided as BBCH codes (n = 1689), which were either transcribed from the phytosanitary bulletins or derived from the narrative description of the visual observation. Phenological data refer to the main early and late grapevine varieties in the eight regions (NUTS-2 administrative unit). Each record is associated with the NUTS-2 and NUTS-3 (31 provinces) administrative unit of reference, to the growing season (2012-2017), and refers to the individual risk assessment by the six evaluators. The dataset is hosted by the Centre for Agriculture and Environment of the Italian Council for Agricultural Research and Economics. These data could be helpful to researchers who develop either grapevine phenological models or process-based epidemiological predictive algorithms in order to refine their calibration and evaluation, as well as being a valuable resource for stakeholders in charge of evaluating the effective implementation of Integrated Pest Management in the decision-making process of public plant protection services in Italy.
DOI: 10.6084/m9.figshare.25259572.v1
title: Yang et al. Data (Significant accrual of soil organic carbon through long-term rice cultivation in paddy fields in China)

description: Significant accrual of soil organic carbon through long-term rice cultivation in paddy fields in China
DOI: 10.6084/m9.figshare.28581131.v1
title: <i>Hypocrella </i><i>khonsanitii</i>

description: Phylogenetically, <i>Hypocrella </i><i>khonsanitii</i> is closely related to <i>H. </i><i>siamensis</i> (Mongkolsamrit et al. 2009).
DOI: 10.17632/3r3zsmx34k
title: Direct Lenders in the U.S. Middle Market