cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2b97sp
title: CCDC 2153842: Experimental Crystal Structure Determination

description: Related Article: Xiang-Bin Han, Hui-Yuan Zu, Chao-Yang Chai, Bei-Dou Liang, Chang-Chun Fan, Wen Zhang|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23255597
title: CNV.final.anno.reults.gz

description: The CNV dataset for whole genome resquencing of 101 geese.
DOI: 10.6084/m9.figshare.23255597.v1
title: CNV.final.anno.reults.gz

description: The CNV dataset for whole genome resquencing of 101 geese.
DOI: 10.5281/zenodo.7935261
title: Experimental Factors Influence Diversity Metrics of the Gut Microbiome in Laboratory Mice

description: Abstract<br> Introduction Gut microbiome studies often overlook experimental factors that could influence gut microbiome diversity and could impact findings. Large-scale studies investigating these experimental factors are lacking. Thus, we aimed to determine which experimental factors influence the gut microbiome diversity in pre-clinical animal model studies. <br> Methods We extracted DNA and sequenced the V4 region of the 16S rRNA gene of a total of 538 samples from various sections of the gastrointestinal tract of 303 young and aged male and female C57BL/6J mice of three different genotypes on five diets from three animal house facilities. As a proof-of-concept in a disease model, some mice were treated with sham or angiotensin II, a commonly studied agent used as a hypertension model. Some samples were sequenced twice as a matched-comparison group. Results Using over 17 million sequencing reads, we found that experimental factors such as animal house facility, genotype, diet, age, sex, sampling site, and technical factor (i.e., sequencing batch) affected both α- and β-diversity (weighted and unweighted UniFrac), and were associated with compositional changes in the microbiome at varying magnitude, with diet and sampling site having the largest effect. After adjustment by these factors, treatment with angiotensin II had no impact on α-diversity and was only significant in unweighted UniFrac (presence/absence of bacteria) analyses. <br> Conclusion Our data identified several key experimental and technical factors that affect the gut microbiome in laboratory mice. Our findings support that not accounting or adjusting for these factors may lead to false-positive discoveries and non-biologically relevant findings in the gut microbiome field.
description: {"references": ["https://doi.org/10.1101/2023.04.08.536089"]}
DOI: 10.5281/zenodo.7935260
title: Experimental Factors Influence Diversity Metrics of the Gut Microbiome in Laboratory Mice

description: Abstract<br> Introduction Gut microbiome studies often overlook experimental factors that could influence gut microbiome diversity and could impact findings. Large-scale studies investigating these experimental factors are lacking. Thus, we aimed to determine which experimental factors influence the gut microbiome diversity in pre-clinical animal model studies. <br> Methods We extracted DNA and sequenced the V4 region of the 16S rRNA gene of a total of 538 samples from various sections of the gastrointestinal tract of 303 young and aged male and female C57BL/6J mice of three different genotypes on five diets from three animal house facilities. As a proof-of-concept in a disease model, some mice were treated with sham or angiotensin II, a commonly studied agent used as a hypertension model. Some samples were sequenced twice as a matched-comparison group. Results Using over 17 million sequencing reads, we found that experimental factors such as animal house facility, genotype, diet, age, sex, sampling site, and technical factor (i.e., sequencing batch) affected both α- and β-diversity (weighted and unweighted UniFrac), and were associated with compositional changes in the microbiome at varying magnitude, with diet and sampling site having the largest effect. After adjustment by these factors, treatment with angiotensin II had no impact on α-diversity and was only significant in unweighted UniFrac (presence/absence of bacteria) analyses. <br> Conclusion Our data identified several key experimental and technical factors that affect the gut microbiome in laboratory mice. Our findings support that not accounting or adjusting for these factors may lead to false-positive discoveries and non-biologically relevant findings in the gut microbiome field.
description: {"references": ["https://doi.org/10.1101/2023.04.08.536089"]}
DOI: 10.5281/zenodo.7979996
title: ZooID Dataset and Model Weights

description: The first iteration of the ZooID dataset and model weights. <strong>originalImages</strong>: Contains the images as they were originally taken <strong>manuallyVerified_ExtractedImages</strong>: Contains the images after extraction, and being manually verified to remove artifacts and poorly segmented images <strong>model_weights</strong>: Contains the weights and information associated with the highest performing model as of this datasets publication This deposit is associated with the code at: https://github.com/arickGrootveld/ZooID
DOI: 10.5281/zenodo.7979995
title: ZooID Dataset and Model Weights

description: The first iteration of the ZooID dataset and model weights. <strong>originalImages</strong>: Contains the images as they were originally taken <strong>manuallyVerified_ExtractedImages</strong>: Contains the images after extraction, and being manually verified to remove artifacts and poorly segmented images <strong>model_weights</strong>: Contains the weights and information associated with the highest performing model as of this datasets publication This deposit is associated with the code at: https://github.com/arickGrootveld/ZooID
DOI: 10.34740/kaggle/dsv/5802317
title: Michelin Guide Restaurants
DOI: 10.25446/oxford.23205173.v1
title: Digitised, searchable Holle List in Stokhof (1980)

description: The digitised Holle List in Stokhof (1980). Visit the webpage for details and the interactive version of the list (see Table 1 on that webpage). <strong>References</strong> Rajeg, Gede Primahadi Wijaya. 2023. Digitised, searchable Holle List in Stokhof (1980) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.7972274 Stokhof, W. A. L. (ed.). 1980. <em>Holle lists, vocabularies in languages of Indonesia, vol. 1: Introductory volume</em>. Vol. Materials in Languages of Indonesia. Canberra, A.C.T., Australia: Dept. of Linguistics, Research School of Pacific Studies, The Australian National University. https://core.ac.uk/reader/159464813.
DOI: 10.26179/y7yh-wx26
title: Aerial surveys of Davis station and an area of the Vestfold Hills to the north-east of the station 2017/18
DOI: 10.4225/15/5a7bc9d5d695a
title: Surveys at Heidemann Valley and Davis during the 2015/16 field season
DOI: 10.21227/8qfp-qx18
title: Symmetric degree reduction on random graphs

description: To utilize a quantum annealing system such as D-Wave's to solve a graph coloring problem,
it is necessary to convert the utility polynomial into a quadratic polynomial in binary variables.
This is called QUBO (quadratic unconstrained binary optimization) problem.
In any degree reduction process, we need to introduce auxiliary variables,
and more variables we have in the QUBO problem, less likely a
quantum annealing system can find an optimal solution. 
The current degree reduction methods applies to monomials.
We designed a new degree reduction method that applies to symmetric polynomials.
We simulate the new method on random graphs and compare with the monomial-wise degree reduction methods. 
We created random p-graphs and their utility polynomials for various p and vertex sizes.
Then we applied degree reduction methods to the polynomials.
Each file contains information on numbers of variables and monomials of the reduced polynomials.
DOI: 10.6084/m9.figshare.23171099.v3
title: Supplementary Data

description: ATAC and RNA marker gene list and Peak Matrix
DOI: 10.26036/cnp0004139
title: The genome assembly and annotation of the Naja kaouthia

description: We collected samples from Naja kaouthia from Guilin, Guangxi Province,we present a highly contiguous Naja kaouthia genome with a genome size of 1.67 GB. The repeat content in the genome is 42.81%, and a total of 24402 functional genes have been annotated.
DOI: 10.26036/cnp0004151
title: The genome assembly and annotation of the White-Lipped Tree viper Trimeresurus albolabris

description: We reproted the first whole genome assemble of T. albolabris with high contigious, which was collected in Mengzi, Yunnan, China. After genome sequencing and assembling, the genome of this male T. albolabris individual has 1.51GB in length and consisting of 39.86% repeat element content. From this, 21,695 genes were identified.
DOI: 10.6084/m9.figshare.23171099.v4
title: Supplementary Data

description: ATAC and RNA marker gene list and Peak Matrix
DOI: 10.5067/viirs/aerdb_l2_viirs_noaa20_nrt.002
title: VIIRS/NOAA-20 Deep Blue Aerosol L2 6-Min Swath 6 km (NRT)
DOI: 10.5067/viirs/aerdb_l2_viirs_snpp_nrt.002
title: VIIRS/SNPP Deep Blue Aerosol L2 6-Min Swath 6 km (NRT)
DOI: 10.6084/m9.figshare.23256080
title: Supplementary Material for: The top 100 most cited articles on Acupuncture in the last 20 years: a Bibliometric Analysis

description: Background: Acupuncture has gained increasing international attention in recent decades. The act of incorporating acupuncture treatment into the routine treatment of COVID-19 in China drove us to review the 100 most influential articles of the last 20 years to learn about the current status and trends of acupuncture. Method: Articles related to acupuncture from January 1, 2001 to July 4, 2022 were searched in the Clarivate Analytics Web of Science Core Collection database. The top 100 most cited publications were selected and information were extracted. Software VOSviewer, GraphPad Prism, Scimago Graphica and CiteSpace were used to visualize and analyze the extracted data. Result: The 100 most cited articles were identified, with an average of 218 citations (range: 131-625). The majority of the top 100 articles were from the United States (n = 53). The institution that published the most highly cited papers was Harvard University (n = 16). The most influential team was Klaus Linde's group. Pain was the top ranked journal in terms of number of publications. The largest clusters for co-occurrence keyword analysis focused on acupuncture and electroacupuncture analgesia and brain imaging responses to acupuncture stimulation via functional MRI. The two highest strength burst keywords were "randomized controlled trials" and "osteoarthritis", with "randomized controlled trials" being a consistent burst keyword from 2011 to the present. Conclusion: This study provides insight into articles of historical significance in the field of acupuncture through bibliometric analysis. These data should provide clinicians and researchers with insight into future directions related to acupuncture.
DOI: 10.6084/m9.figshare.23171099.v5
title: Supplementary Data

description: ATAC and RNA marker gene list and Peak Matrix
DOI: 10.6084/m9.figshare.23216471
title: Data and metadata for Kulha et al.: Race to the canopy: the development of tree size hierarchies following a partial disturbance in a boreal old-growth forest. Canadian Journal of Forest Research.

description: The dataset contains the original field and tree ring width data used in the paper. Included are: <br> - <strong>tree_data.txt </strong>is a tab-delimited text file and<strong> </strong> contains field records for each tree in the dataset - <strong>tree_data_key.txt</strong> is a tab-delimited text file and briefly explains the variables in the tree_data.txt.-file - <strong>tree_ring_widths_stem_base.rwl</strong> contains tree ring measurements at the base of the stem. The measurements are in the so-called decadal (or tucson) format, readable e.g., with the functions provided in the dplR package for R (see also opendendro.org) - <strong>tree_ring_widths_13.rwl</strong> contains tree ring measurements at 1.3 m height. The measurements are in the so-called decadal (or tucson) format, readable e.g., with the functions provided in the dplR package for R (see also opendendro.org)
DOI: 10.6084/m9.figshare.23216471.v1
title: Data and metadata for Kulha et al.: Race to the canopy: the development of tree size hierarchies following a partial disturbance in a boreal old-growth forest. Canadian Journal of Forest Research.

description: The dataset contains the original field and tree ring width data used in the paper. Included are: <br> - <strong>tree_data.txt </strong>is a tab-delimited text file and<strong> </strong> contains field records for each tree in the dataset - <strong>tree_data_key.txt</strong> is a tab-delimited text file and briefly explains the variables in the tree_data.txt.-file - <strong>tree_ring_widths_stem_base.rwl</strong> contains tree ring measurements at the base of the stem. The measurements are in the so-called decadal (or tucson) format, readable e.g., with the functions provided in the dplR package for R (see also opendendro.org) - <strong>tree_ring_widths_13.rwl</strong> contains tree ring measurements at 1.3 m height. The measurements are in the so-called decadal (or tucson) format, readable e.g., with the functions provided in the dplR package for R (see also opendendro.org)
DOI: 10.24340/dg5u-gapqxn
title: Longitudinal  metagenome data

description: Microbial metagenome data of young women followed for 12 years.
DOI: 10.5517/ccdc.csd.cc28nzqn
title: CCDC 2105542: Experimental Crystal Structure Determination

description: Related Article: De Wang, Xinyu Liu, Manjaly J. Ajitha, Zhixin Liu, Yongyi Hu, Kuo-Wei Huang|2023|Org.Lett.|25|3249|doi:10.1021/acs.orglett.3c00984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28zyhq
title: CCDC 2115114: Experimental Crystal Structure Determination

description: Related Article: De Wang, Xinyu Liu, Manjaly J. Ajitha, Zhixin Liu, Yongyi Hu, Kuo-Wei Huang|2023|Org.Lett.|25|3249|doi:10.1021/acs.orglett.3c00984
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bf2wr
title: CCDC 2157534: Experimental Crystal Structure Determination

description: Related Article: Estefanía Tiburcio, Yongkun Zheng, Cristina Bilanin, Juan Carlos Hernández-Garrido, Alejandro Vidal-Moya, Judit Oliver-Meseguer, Nuria Martín, Marta Mon, Jesús Ferrando-Soria, Donatella Armentano, Antonio Leyva-Pérez, Emilio Pardo|2023|J.Am.Chem.Soc.|145|10342|doi:10.1021/jacs.3c02155
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c10l1
title: CCDC 2175722: Experimental Crystal Structure Determination

description: Related Article: Carles Fuertes Espinosa, Tanya K. Ronson, Jonathan R. Nitschke|2023|J.Am.Chem.Soc.|145|9965|doi:10.1021/jacs.3c00661
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c10m2
title: CCDC 2175723: Experimental Crystal Structure Determination

description: Related Article: Carles Fuertes Espinosa, Tanya K. Ronson, Jonathan R. Nitschke|2023|J.Am.Chem.Soc.|145|9965|doi:10.1021/jacs.3c00661
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fr3y8
title: CCDC 2256550: Experimental Crystal Structure Determination

description: Related Article: Yang Li, Shangbiao Zhang, Yanan Wang, Yan Gao, Chao Chen, Zheliang Yuan|2023|Org.Lett.|25|3210|doi:10.1021/acs.orglett.3c00846
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.4225/15/5a5419388af2c
title: Surveys at Davis and surrounds during the 2016/17 field season
DOI: 10.6084/m9.figshare.23256149
title: Mutant Human Neural Stem Cells Undergo Sequential Fate Switches to Generate Malignant Heterogeneity during Gliomagenesis

description: We reupload a new url of seurat object which was used in our article.
DOI: 10.6084/m9.figshare.23256149.v1
title: Mutant Human Neural Stem Cells Undergo Sequential Fate Switches to Generate Malignant Heterogeneity during Gliomagenesis

description: We reupload a new url of seurat object which was used in our article.
DOI: 10.6084/m9.figshare.11610870
title: Mutant Human Neural Stem Cells Undergo Sequential Fate Switches to Generate Malignant Heterogeneity during Gliomagenesis

description: bulk (TN and TNP samples) and single-cell RNAseq (TNP samples) datasets. <br> Please note that <strong>M0</strong>, <strong>M1</strong> and <strong>M2</strong> correspond to <strong>T0</strong>, <strong>T1</strong> and <strong>T2</strong> in text, respectively. <br> - 2023-0529, we uploaded a tiny version of `seurat.v3.Rds` at here (https://figshare.com/ndownloader/files/40982687), which didn't include the normalized and scaled matrix.
DOI: 10.6084/m9.figshare.11610870.v1
title: seurat object

description: URD object (10.6084/m9.figshare.11610870)Bulk gene expression(10.6084/m9.figshare.11880564)Seurat object(10.6084/m9.figshare.11880582)
DOI: 10.26179/es2w-am07
title: Surveys at Davis for the Australian Antarctic Division's Station Infrastructure Project 5135 January, February 2019
DOI: 10.5281/zenodo.7298432
title: Oxygen ion batteries

description: Raw data and analyzed data of oxygen ion battery full and half cells. Half cells are ones with one mixed conducting storage electrode and one reversible electrode in contact with the atmosphere. Full cells feature two MIEC storage electrodes. Raw data are constant current charge/discharge cycles (i.e. voltage and current vs. time) at different temperatures and with different currents. Integrated voltage vs. charge curves are stored in the AltInteg directory. Analyzed data are charge and discharge capacities, cutoff-voltages, energy densities, etc. extracted from those integrated data. The scripts to analyze and plot the data are also included. This data shown here are also available in this github repository: https://github.com/AlexSchmid22191/OxygenIonBattery
DOI: 10.5281/zenodo.7298433
title: Oxygen ion batteries

description: Raw data and analyzed data of oxygen ion battery full and half cells. Half cells are ones with one mixed conducting storage electrode and one reversible electrode in contact with the atmosphere. Full cells feature two MIEC storage electrodes. Raw data are constant current charge/discharge cycles (i.e. voltage and current vs. time) at different temperatures and with different currents. Integrated voltage vs. charge curves are stored in the AltInteg directory. Analyzed data are charge and discharge capacities, cutoff-voltages, energy densities, etc. extracted from those integrated data. The scripts to analyze and plot the data are also included. This data shown here are also available in this github repository: https://github.com/AlexSchmid22191/OxygenIonBattery
DOI: 10.5281/zenodo.5564456
title: Tailored nano-columnar La2NiO4 cathodes for improved electrode performance

description: La<sub>2</sub>NiO<sub>4</sub> is a promising cathode material for intermediate and low temperature solid oxide cell applications, due to good electronic and ionic conductivity and high oxygen exchange activity with a low activation energy. Oxygen incorporation and transport in La<sub>2</sub>NiO<sub>4 </sub>(LNO) thin films is limited by surface reactions. Hence, tailoring the morphology is expected to lead to an overall improvement of electrode performance. We report on the growth of to nano-architectured La<sub>2</sub>NiO<sub>4</sub> thin film electrodes by PI-MOCVD, achieving vertically gapped columns with multi-fold active surface area, leading to faster oxygen exchange. This nano-rod structure is rooted in a dense bottom layer serving as good electronic and ionic conduction pathway. The microstructure is tuned by modification of the growth temperature and characterised by SEM, TEM and XRD. We studied the effect of surface activity by electrical conductivity relaxation measurements in fully dense and columnar-structured La<sub>2</sub>NiO<sub>4</sub> thin films of various thicknesses on single crystal substrates. Our results indicate that the increased surface area, in combination with the opening of different surface terminations, leads to a significant enhancment of the total exchange activity in columnar structured films.
DOI: 10.5281/zenodo.5564457
title: Tailored nano-columnar La2NiO4 cathodes for improved electrode performance

description: La<sub>2</sub>NiO<sub>4</sub> is a promising cathode material for intermediate and low temperature solid oxide cell applications, due to good electronic and ionic conductivity and high oxygen exchange activity with a low activation energy. Oxygen incorporation and transport in La<sub>2</sub>NiO<sub>4 </sub>(LNO) thin films is limited by surface reactions. Hence, tailoring the morphology is expected to lead to an overall improvement of electrode performance. We report on the growth of to nano-architectured La<sub>2</sub>NiO<sub>4</sub> thin film electrodes by PI-MOCVD, achieving vertically gapped columns with multi-fold active surface area, leading to faster oxygen exchange. This nano-rod structure is rooted in a dense bottom layer serving as good electronic and ionic conduction pathway. The microstructure is tuned by modification of the growth temperature and characterised by SEM, TEM and XRD. We studied the effect of surface activity by electrical conductivity relaxation measurements in fully dense and columnar-structured La<sub>2</sub>NiO<sub>4</sub> thin films of various thicknesses on single crystal substrates. Our results indicate that the increased surface area, in combination with the opening of different surface terminations, leads to a significant enhancment of the total exchange activity in columnar structured films.
DOI: 10.6084/m9.figshare.23256065
title: UPR (Wang and Dai)

description: The replication data for "The Politics of Human Rights: Understanding How Regime Similarity Affects Naming and Shaming at the Universal Periodic Review"