cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24659592
title: Source Data for 'A clinically applicable connectivity signature for glioblastoma includes the tumor network driver <i>CHI3L1</i>'<i> </i>

description: Tumor microtubes (TMs) connect glioma cells to a network with considerable relevance for tumor progression and therapy resistance. However, the determination of TM-interconnectivity in individual tumors is challenging and the impact on patient survival unresolved. Here, we establish a connectivity signature from single-cell RNA-sequenced (scRNA-Seq) xenografted primary glioblastoma (GB) cells using a dye uptake methodology, and validate it with recording of cellular calcium epochs and clinical correlations. Astrocyte-like and mesenchymal-like GB cells have the highest connectivity signature scores in scRNA-sequenced patient-derived xenografts and patient samples. In large GB cohorts, TM-network connectivity correlates with the mesenchymal subtype and dismal patient survival. <i>CHI3L1</i> gene expression serves as a robust molecular marker of connectivity and functionally influences TM networks. The connectivity signature allows insights into brain tumor biology, provides a proof-of-principle that tumor cell TM-connectivity is relevant for patients’ prognosis, and serves as a robust prognostic biomarker. ​
DOI: 10.6084/m9.figshare.24659592.v2
title: Source Data for 'A clinically applicable connectivity signature for glioblastoma includes the tumor network driver <i>CHI3L1</i>'<i> </i>

description: Tumor microtubes (TMs) connect glioma cells to a network with considerable relevance for tumor progression and therapy resistance. However, the determination of TM-interconnectivity in individual tumors is challenging and the impact on patient survival unresolved. Here, we establish a connectivity signature from single-cell RNA-sequenced (scRNA-Seq) xenografted primary glioblastoma (GB) cells using a dye uptake methodology, and validate it with recording of cellular calcium epochs and clinical correlations. Astrocyte-like and mesenchymal-like GB cells have the highest connectivity signature scores in scRNA-sequenced patient-derived xenografts and patient samples. In large GB cohorts, TM-network connectivity correlates with the mesenchymal subtype and dismal patient survival. <i>CHI3L1</i> gene expression serves as a robust molecular marker of connectivity and functionally influences TM networks. The connectivity signature allows insights into brain tumor biology, provides a proof-of-principle that tumor cell TM-connectivity is relevant for patients’ prognosis, and serves as a robust prognostic biomarker. ​
DOI: 10.6084/m9.figshare.24659592.v1
title: Source Data for 'A clinically applicable connectivity signature for glioblastoma includes the tumor network driver <i>CHI3L1</i>'<i> </i>

description: Tumor microtubes (TMs) connect glioma cells to a network with considerable relevance for tumor progression and therapy resistance. However, the determination of TM-interconnectivity in individual tumors is challenging and the impact on patient survival unresolved. Here, we establish a connectivity signature from single-cell RNA-sequenced (scRNA-Seq) xenografted primary glioblastoma (GB) cells using a dye uptake methodology, and validate it with recording of cellular calcium epochs and clinical correlations. Astrocyte-like and mesenchymal-like GB cells have the highest connectivity signature scores in scRNA-sequenced patient-derived xenografts and patient samples. In large GB cohorts, TM-network connectivity correlates with the mesenchymal subtype and dismal patient survival. <i>CHI3L1</i> gene expression serves as a robust molecular marker of connectivity and functionally influences TM networks. The connectivity signature allows insights into brain tumor biology, provides a proof-of-principle that tumor cell TM-connectivity is relevant for patients’ prognosis, and serves as a robust prognostic biomarker. ​
DOI: 10.18112/openneuro.ds001555.v1.0.1
title: Large Single-Subject Functional MRI Datasets at 7T
DOI: 10.3886/e183315
title: Data and Code for: Coming apart? Cultural distances in the United States over time

description: We analyze temporal trends in cultural distances between groups in the US defined by income, education, gender, race, and political ideology. We measure cultural distance between two groups as the ability to infer an individual’s group based on his or her (i) media diet, (ii) consumer behavior, (iii) time use, (iv) social attitudes, or (v) newborn’s name. Gender difference in time use decreased between 1965 and 1995 and has remained constant since. Differences in social attitudes by political ideology, and somewhat by income, have increased over the last four decades. Whites and non-whites have diverged in consumer behavior. For all other demographic divisions and cultural dimensions, cultural distance has been broadly constant over time.
DOI: 10.3886/e183315v1
title: Data and Code for: Coming apart? Cultural distances in the United States over time

description: We analyze temporal trends in cultural distances between groups in the US defined by income, education, gender, race, and political ideology. We measure cultural distance between two groups as the ability to infer an individual’s group based on his or her (i) media diet, (ii) consumer behavior, (iii) time use, (iv) social attitudes, or (v) newborn’s name. Gender difference in time use decreased between 1965 and 1995 and has remained constant since. Differences in social attitudes by political ideology, and somewhat by income, have increased over the last four decades. Whites and non-whites have diverged in consumer behavior. For all other demographic divisions and cultural dimensions, cultural distance has been broadly constant over time.
DOI: 10.5281/zenodo.10257441
title: Investigating news coverage and circulation over time in a quantitative manner: the TARO framework (auxiliary material)

description: Dataset with snapshots of published news in Spiegel, France24, ANSA, ilPost, BBC, ABC (11,12,13,14,15 of March 2023).Used for the analyses presented in case study 1 and 2.
DOI: 10.5281/zenodo.10257442
title: Investigating news coverage and circulation over time in a quantitative manner: the TARO framework (auxiliary material)

description: Dataset with snapshots of published news in Spiegel, France24, ANSA, ilPost, BBC, ABC (11,12,13,14,15 of March 2023).Used for the analyses presented in case study 1 and 2.
DOI: 10.57745/p3bd1z
title: rpg_complete_2021_d64.zip

description: :unav
DOI: 10.57745/1eqoia
title: notice_RPG_complété_v3.pdf

description: :unav
DOI: 10.57745/8yghjk
title: rpg_complete_2021_d47.zip

description: :unav
DOI: 10.57745/jjhk7r
title: rpg_complete_2021_d24.zip

description: :unav
DOI: 10.57745/jjlu86
title: rpg_complete_2021_d40.zip

description: :unav
DOI: 10.57745/2udpyf
title: rpg_complete_2021_d33.zip

description: :unav
DOI: 10.18739/a2vm42z9c
title: Respiration in the water column of the western Arctic Ocean in 2002 and 2004

description: This data set consists of respiration estimated at usually three depths within the water column during summer 2002, spring 2004 and summer 2004 on cruises HLY-02-03, HLY-04-03, and HLY-02-04, respectively, abroad the U.S. Coast Guard Cutter (USCGC) Healy, in the western Arctic Ocean. The cruises were part of the National Science Foundation (NSF)-supported Shelf Basin Interaction (SBI) project. SBI was a multidisciplinary program to investigate the impact of global change on physical, biological and geochemical processes from the Chukchi and Beaufort Sea shelf to the basin of the Western Arctic Ocean. The respiration data were collected as part of an effort to understand heterotrophic processes that impact the flux of carbon from the shelf to the Arctic basin and from the surface ocean to the benthos. In addition to respiration, the data set consists of bacterial production and abundance and basic oceanographic properties, such as temperature, salinity, and nutrient concentrations, measured in water from the same Conductivity-Temperature-Depth (CTD) bottles as used to collect water for the respiration measurements. Collection and analysis of the CTD data were done by Charles Flagg, Lou Codispoti, and Jim Swift.
DOI: 10.5281/zenodo.8020431
title: Data for "Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis"

description: Raw data associated with the publication "Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis". Temperature profile, daily measurements, physiological measurements, elemental analysis, NanoSIMS data, and cell density data are included as individual tabs in the Excel file.
DOI: 10.5281/zenodo.10257495
title: Data for "Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis"

description: Raw data associated with the publication "Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis". Temperature profile, daily measurements, physiological measurements, elemental analysis, NanoSIMS data, and cell density data are included as individual tabs in the Excel file.
DOI: 10.5281/zenodo.8020430
title: Data for "Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis"

description: Raw data associated with the publication "Host starvation and in hospite degradation of algal symbionts shape the heat stress response of the Cassiopea-Symbiodiniaceae symbiosis". Temperature profile, daily measurements, physiological measurements, elemental analysis, NanoSIMS data, and cell density data are included as individual tabs in the Excel file.
DOI: 10.5519/qd.rg471vd1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6073/pasta/d49f10ec87b2b7503a7ee908e94a5dba
title: Long-term Vegetation Dynamics on the Massachusetts Coast from 2000 BP to Present

description: We use a retrospective approach to reconstruct the past distribution of fire in New England and to investigate the important drivers of this pattern across the period of European arrival to North America. Our study sites are in New England, and range from pitch pine and oak forests of coastal Massachusetts, pine and hardwood forests of central Massachusetts, and northern hardwood and spruce fir forests of northern Massachusetts and Vermont. We collected sediment profiles from 18 lakes across the study area to assess fossil charcoal and pollen abundance over the past 1000 years and including the time period of European arrival and settlement. Based on presettlement pollen composition, our study sites are divided into three vegetation types: 1) pitch pine and oak, 2) oak, pine, and hardwood, and 3) northern hardwoods. The abundance of presettlement charcoal in these lakes is closely related to climate and the composition of surrounding vegetation. Charcoal is most abundant in pitch pine forests and least common in northern hardwood and spruce forests. Following the arrival of Europeans, charcoal abundance increases, at most sites substantially, and vegetation composition changed in a direction of either greater dominance by pitch pine or white pine, depending on whether the forests were located in the southern or northern part of New England. The major factor influencing the distribution of fire across New England is climate, which has a direct effect on the physical conditions conducive to fire ignition and spread and an indirect effect on fire through its control on the distribution of vegetation at this spatial scale. We find evidence that other factors exert some control over local fire regimes as well including landforms and their impact on vegetation composition, firebreaks, and prevailing winds. Native Americans likely influenced the local occurrence of fire, but their impact on regional fire regimes in New England is not apparent from this or other studies. However, additional paleoecological, archaeological and historical work needs to be done to better address this question. In contrast, Europeans had a dramatic effect on fire throughout the New England landscape, increasing its occurrence almost everywhere.
DOI: 10.6073/pasta/33231d4df3dd821ac146cf42200175a7
title: Long-term Vegetation Dynamics in Southwestern New Hampshire from 13000 BP to Present

description: The paleoecological record allows contemporary ecologists to put current phenomena into the context of a longer time-frame, thereby providing the opportunity to evaluate the importance of slowly operating processes, past cyclic or unusual events, disturbance regimes, and historically constrained phenomena. We briefly outline the environmental history of the Quaternary, discuss the spatial and temporal resolution of the paleoecological evidence for biotic change, and summarize data relevant to such current issues as the nature of the biotic community, the role of disturbance, stability versus rapid change, evolutionary theory, explanations of species diversity, and refugia theory. Finally, we offer examples of the utility of paleoecological techniques for ecologists and environmental scientists.
DOI: 10.5066/p990uk3v
title: Stream cross-section, benthic macroinvertebrate and fish taxa counts and abundance, and water chemistry data for the Clarksburg study area in Montgomery County, Maryland, 1992 - 2020

description: Montgomery County, Maryland Department of Environmental Protection has collected datasets to assess the health of streams since the early 1990s. Datasets include geomorphic stream cross-sectional surveys, fish and benthic macroinvertebrate counts and taxa abundance, and water chemistry data collected at the time of benthic and fish sampling (dissolved oxygen, pH, specific conductance, air temperature, and water temperature). Data span years 1992 to 2020 at five watersheds within the Clarksburg study area. Watersheds include a forested reference site (Soper), an urban site with centralized stormwater management (Crystal Rock), and three treatment watersheds (TR104, TR109, and Cabin Branch) within the Clarksburg Special Protection Area that transitioned from agriculture to suburban development with distributed stormwater management. These data were used to assess the impacts of distributed stormwater management on stream ecosystem function. All datasets were collected by Montgomery County, Maryland Department of Environmental Protection.
DOI: 10.57830/2301647
title: A Dataset of Amphibian Species in U.S. National Parks, Version 1.3

description: National parks and other protected areas are important for preserving landscapes and biodiversity worldwide. An essential component of the mission of the United States (U.S.) National Park Service (NPS) requires understanding and maintaining accurate inventories of species on protected lands. We describe a new, national-scale synthesis of amphibian species occurrence in the NPS system. Many park units have a list of amphibian species observed within their borders compiled from various sources and available publicly through the NPSpecies platform. However, many of the observations in NPSpecies remain unverified and the lists are often outdated. We updated the amphibian dataset for each park unit by collating old and new park-level records and had them verified by regional experts. The new dataset contains occurrence records for 292 of the 424 NPS units and includes updated taxonomy, international and state conservation rankings, hyperlinks to a supporting reference for each record, specific notes, and related fields which can be used to better understand and manage amphibian biodiversity within a single park or group of parks.
DOI: 10.6073/pasta/c2d6760fccc7c9a2310b742ae9491c7f
title: Influence of Little Ice Age on New England Vegetation from 2000 BP to Present

description: This multi-proxy study uses paleoecological, paleolimnological, and historical approaches to reconstruct climate, vegetation, and cultural dynamics over the past 1500 years at sites arrayed across the climatic and forest gradients of New England and to place these results in a regional framework through analysis of pollen records from the North American Pollen Database. High resolution records were obtained using pollen to interpret vegetation history; chironomids, stable isotopes, geochemistry, and diatoms, supplemented by historical reconstructions, to interpret climate history; charcoal and land-use data to document the human impacts; and Pb-210 and C-14 for chronological control. Results will provide: (1) an objective characterization of the Little Ice Age and climate history in New England, (2) comparison of pre- and post-European forest dynamics in relationship to independent environmental and land-use histories, (3) a reexamination of historical vegetation dynamics in light of prior climate an vegetation change, and (4) widespread availability of data and results through publications, symposium presentation, and the Harvard Forest Archives and web pages.
DOI: 10.5517/ccdc.csd.cc2byjzt
title: CCDC 2173347: Experimental Crystal Structure Determination

description: Related Article: Adam J. Zoll, Jenna C. Molas, Brandon Q. Mercado, Jonathan A. Ellman|2023|Angew.Chem.,Int.Ed.|62|e202210822|doi:10.1002/anie.202210822
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt8zf
title: CCDC 2169255: Experimental Crystal Structure Determination

description: Related Article: Fumihiro Kawagoe, Sayuri Mototani, Kaori Yasuda, Akiko Takeuchi, Hiroki Mano, Shinji Kakuda, Hiroshi Saitoh, Toshiyuki Sakaki, Atsushi Kittaka|2023|J.Org.Chem.|88|12394|doi:10.1021/acs.joc.3c01134
description: Related Article: Fumihiro Kawagoe, Sayuri Mototani, Kaori Yasuda, Akiko Takeuchi, Hiroki Mano, Shinji Kakuda, Hiroshi Saitoh, Toshiyuki Sakaki, Atsushi Kittaka|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d1n26
title: CCDC 2206117: Experimental Crystal Structure Determination

description: Related Article: Fu Wensheng, Ning Guibin, Zhou Qi, Luo Jianyu, Zhong Zhengrong|2018|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f8zpd
title: CCDC 2242964: Experimental Crystal Structure Determination

description: Related Article: Qing-Feng Luo, Hao-Fei Ni, Pei-Zhi Huang, Ming Zhu, Chang-Feng Wang, Qian-Hao Zhuo, Da-Wei Fu, Yi Zhang, Zhi-Xu Zhang|2023|Mater. Chem. Front.|7|6247|doi:10.1039/D3QM00800B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bzcmb
title: CCDC 2174142: Experimental Crystal Structure Determination

description: Related Article: Qing-Feng Luo, Hao-Fei Ni, Pei-Zhi Huang, Ming Zhu, Chang-Feng Wang, Qian-Hao Zhuo, Da-Wei Fu, Yi Zhang, Zhi-Xu Zhang|2023|Mater. Chem. Front.|7|6247|doi:10.1039/D3QM00800B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fwdyp
title: CCDC 2260673: Experimental Crystal Structure Determination

description: Related Article: Harindu Rajapaksha, Grant C. Benthin, Dmytro V. Kravchuk, Haley Lightfoot, Sara E. Mason, Tori Z. Forbes|2023|Inorg.Chem.|62|17265|doi:10.1021/acs.inorgchem.3c02502
description: Related Article: Harindu Rajapaksha, Grant Benthin, Dmytro V. Kravchuk, Haley Lightfoot, Sara E. Mason, Tori Z. Forbes|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5730
title: CCDC 2269141: Experimental Crystal Structure Determination

description: Related Article: Abdul Ajees Abdul Salam|2023|CSD Communication|||
description: Related Article: Kashmitha Muthamma, Sudarshan Acharya, Dhanya Sunil, Prakasha Shetty, Abdul Ajees Abdul Salam, Suresh D Kulkarni, Anand P J|2023|J.Colloid Interface Sci.|653|209|doi:10.1016/j.jcis.2023.09.033
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fsznw
title: CCDC 2258339: Experimental Crystal Structure Determination

description: Related Article: Jing-Li Qi, Jiajing Wu, Shu-Fang Yan, Jun-Jie Xu, Wenlong Liu, Sheng-Ping Guo|2023|Inorg.Chem.|62|18825|doi:10.1021/acs.inorgchem.3c03608
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10257481
title: Material adicional de Ex cenobio Sancti Ysidori Lengionensis usque ad Bibliothecam Regiam Belgicam: De partidas, cronicones y sermones romances

description: Material adicional al artículo publicado en Incipit 43 (2023).
DOI: 10.5281/zenodo.10257480
title: Material adicional de Ex cenobio Sancti Ysidori Lengionensis usque ad Bibliothecam Regiam Belgicam: De partidas, cronicones y sermones romances

description: Material adicional al artículo publicado en Incipit 43 (2023).
DOI: 10.6084/m9.figshare.24725103
title: Supplementary Data (Part II).xlsx

description: Data of Generation of late Permian Fe-rich mafic intrusions through subducted sediment-derived melt-pyroxenite interaction in Yunkai Massif, South China (Part II): Constraints from bulk-rock geochemistry
DOI: 10.6084/m9.figshare.24725103.v2
title: Supplementary Data (Part II).xlsx

description: Data of Generation of late Permian Fe-rich mafic intrusions through subducted sediment-derived melt-pyroxenite interaction in Yunkai Massif, South China (Part II): Constraints from bulk-rock geochemistry
DOI: 10.6084/m9.figshare.24725103.v1
title: Supplementary Data.xlsx

description: Data of Generation of late Permian Fe-rich mafic intrusions through subducted sediment-derived melt-pyroxenite interaction in Yunkai Massif, South China (Part II): Constraints from bulk-rock geochemistry