cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.831442.v1
title: ESK 1999

description: Hourly mean values recorded at Eskdalemuir observatory in 1999
DOI: 10.6084/m9.figshare.831443.v2
title: ESK hourly means

description: Hourly mean values recorded at Eskdalemuir geomagnetic observatory.
DOI: 10.6084/m9.figshare.831442.v2
title: ESK 1999

description: Hourly mean values recorded at Eskdalemuir observatory in 1999
DOI: 10.6084/m9.figshare.831432.v1
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In this file I report the flow of analyses for reproducing the computations and figures related to the manuscript "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/)
DOI: 10.6084/m9.figshare.831432.v2
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/)
DOI: 10.6084/m9.figshare.831442.v3
title: ESK 1999

description: Hourly mean values recorded at Eskdalemuir observatory in 1999
DOI: 10.6084/m9.figshare.830514
title: Candidatus Halobonum tyrrellensis strain G22, phylogenetic trees

description: These are the phylogenetic trees associated with this genome annoucement (http://genomea.asm.org/content/1/6/e01001-13.full). The trees shows the placement of Ca. Halobonum tyrrellensis G22 within the Halobacteria - HaloG22_16S_v2, is a phylogenetic tree based on the 16S rRNA gene. Alignment was done using Mafft and tree built using FastTree. - HaloG22_v6, contains a phylogenetic tree based on protein markers. The software PhyloPhlan was used to generate this tree
DOI: 10.6084/m9.figshare.831442.v5
title: ESK 1999

description: Hourly mean values recorded at Eskdalemuir observatory in 1999
DOI: 10.6084/m9.figshare.831442.v4
title: ESK 1999

description: Hourly mean values recorded at Eskdalemuir observatory in 1999
DOI: 10.6084/m9.figshare.830506
title: Impostor Syndrome 2013 lecture

description: My 2013 version of a lecture on the Impostor Syndrome given to 1st year MA students in the Columbia Univeristy Conservation Biology programme.
DOI: 10.6084/m9.figshare.830514.v1
title: Candidatus Halobaculum tyrrelensis strain G22, phylogenetic trees

description: Phylogenetic trees showing the placement of G22 within the Halobacteria. - HaloG22_16S_v2, is a phylogenetic tree based on the 16S rRNA gene. Alignment was done using Mafft and tree built using FastTree. - HaloG22_v6, contains a phylogenetic tree based on protein markers. The software PhyloPhlan was used to generate this tree
DOI: 10.6084/m9.figshare.830514.v2
title: Candidatus Halobonum tyrrellensis strain G22, phylogenetic trees

description: These are the phylogenetic trees associated with this genome annoucement (http://genomea.asm.org/content/1/6/e01001-13.full). The trees shows the placement of Ca. Halobonum tyrrellensis G22 within the Halobacteria - HaloG22_16S_v2, is a phylogenetic tree based on the 16S rRNA gene. Alignment was done using Mafft and tree built using FastTree. - HaloG22_v6, contains a phylogenetic tree based on protein markers. The software PhyloPhlan was used to generate this tree
DOI: 10.6084/m9.figshare.831432.v3
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.831432.v4
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830442
title: Software Engineering Need not be Difficult

description: Position paper on how to apply the principles of software engineering and agile methods to support sustainable scientific software. Accepted at the WSSSPE workshop at SC 13.
DOI: 10.6084/m9.figshare.830440
title: Pachyprotasis erraticus F. Smith, 1874, lectotype

description: <em><strong>Pachyprotasis erraticus</strong> </em>F. Smith, 1874, lectotype Current status: a valid species, <em>Pachyprotasis erratica</em> F. Smith, 1874. Original description: " 1. <em>Pachyprotasis erraticus.</em><br>Male.— Length 4 lines. Black, pale yellow beneath. Head : antennæ pale testaceous beneath, and as long as the body ; the face, as high as the insertion of the antennæ, the mandibles, cheeks, and an interrupted narrow line on the vertex, testaceous. Thorax : two longitudinal oblique lines on the mesothorax, the tegulæ, scutellum and two minute spots behind it, testaceous ; wings hyaline and iridescent, the nervures black ; the legs with a black line above, the pectus with two ovate spots, and a longitudinal line beneath the wings (which unites with two perpendicular lines), testaceous. Abdomen : a triangular spot on the first segment, and a short transverse line in the middle of the apical margins of the third and fourth segments, white. <em>Hab.</em>—Hakodadi.<br>This species is extremely like the European <em>P. simulans."</em> Smith, F. 1874: Descriptions of new species of Tenthredinidae, Ichneumonidae, Chrysididae, Formicidae &c. of Japan. - Transactions of the Entomological Society of London for the Year 1874, (3): 373-409, p. 377. Redescription: Kirby, W. F. 1882: List of Hymenoptera with Descriptions and Figures of the Typical Specimens in the British Museum. 1. Tenthredinidae and Siricidae. - London, by order of the Trustees 1: 1-450, p. 278, Plate X. fig. 16.
DOI: 10.6084/m9.figshare.831432.v5
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830440.v1
title: Pachyprotasis erraticus F. Smith, 1874, lectotype

description: <em><strong>Pachyprotasis erraticus</strong> </em>F. Smith, 1874, lectotype Current status: a valid species, <em>Pachyprotasis erratica</em> F. Smith, 1874. Original description: " 1. <em>Pachyprotasis erraticus.</em><br>Male.— Length 4 lines. Black, pale yellow beneath. Head : antennæ pale testaceous beneath, and as long as the body ; the face, as high as the insertion of the antennæ, the mandibles, cheeks, and an interrupted narrow line on the vertex, testaceous. Thorax : two longitudinal oblique lines on the mesothorax, the tegulæ, scutellum and two minute spots behind it, testaceous ; wings hyaline and iridescent, the nervures black ; the legs with a black line above, the pectus with two ovate spots, and a longitudinal line beneath the wings (which unites with two perpendicular lines), testaceous. Abdomen : a triangular spot on the first segment, and a short transverse line in the middle of the apical margins of the third and fourth segments, white. <em>Hab.</em>—Hakodadi.<br>This species is extremely like the European <em>P. simulans."</em> Smith, F. 1874: Descriptions of new species of Tenthredinidae, Ichneumonidae, Chrysididae, Formicidae &c. of Japan. - Transactions of the Entomological Society of London for the Year 1874, (3): 373-409, p. 377. Redescription: Kirby, W. F. 1882: List of Hymenoptera with Descriptions and Figures of the Typical Specimens in the British Museum. 1. Tenthredinidae and Siricidae. - London, by order of the Trustees 1: 1-450, p. 278, Plate X. fig. 16.
DOI: 10.6084/m9.figshare.830439
title: Total Recoverable Petroleum Hydrocarbons from Coastal Dunes in the Northern Gulf of Mexico 2010-2011

description: Soil samples were obtained from foredune, interdune, and backdune plots from seven locations around the northern Gulf of Mexico. The locations include Trinity Island (LA), Horn Island (MS), Santa Rosa Island (FL), Crooked Island (FL), St. George Island (FL), Anclote Key (FL), and La Costa Island (FL). Samples were processed by Test America for TRPH and can be paired with vegetation samples from the same areas.
DOI: 10.6084/m9.figshare.830442.v1
title: WSSSPE

description: Position paper on how to apply the principles of software engineering and agile methods to support sustainable scientific software. Accepted at the WSSSPE workshop at SC 13.
DOI: 10.6084/m9.figshare.831432.v6
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830439.v2
title: Total Recoverable Petroleum Hydrocarbons from Coastal Dunes in the Northern Gulf of Mexico 2010-2011

description: Soil samples were obtained from foredune, interdune, and backdune plots from seven locations around the northern Gulf of Mexico. The locations include Trinity Island (LA), Horn Island (MS), Santa Rosa Island (FL), Crooked Island (FL), St. George Island (FL), Anclote Key (FL), and La Costa Island (FL). Samples were processed by Test America for TRPH and can be paired with vegetation samples from the same areas.
DOI: 10.6084/m9.figshare.830439.v1
title: Total Recoverable Petroleum Hydrocarbons from Coastal Dunes in the Northern Gulf of California 2010-2011

description: Soil samples were obtained from foredune, interdune, and backdune plots from seven locations around the northern Gulf of Mexico. The locations include Trinity Island (LA), Horn Island (MS), Santa Rosa Island (FL), Crooked Island (FL), St. George Island (FL), Anclote Key (FL), and La Costa Island (FL). Samples were processed by Test America for TRPH and can be paired with vegetation samples from the same areas.
DOI: 10.6084/m9.figshare.831432.v7
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830419
title: stepping stone analyses estimating marginal likelihoods for Bayes Factor tests

description: stepping stone analyses estimating marginal likelihoods for Bayes Factor tests. Input file names ending with ss correspond to the normal MrBayes analyses in Appendix S2, but run under the Stepping Stone approach. The Excel file includes mean and standard deviation estimates of the marginal log likelihood values for all Bayes Factor Tests.
DOI: 10.6084/m9.figshare.830423
title: Learning data in flight simulator -result

description: This file countains the computed data of learning experiments done in the torque meter. It mainly correspond to self-learning experiments performed by Dr. Julien Colomb during his post doc. You can access the raw data for each experiment: the figshareid leads you to figshare fileset article, and rawfile_name corresponds to the name of the file uploaded in that article. Note that pretest values may be different in the computed data file than in the raw file, because the 0 torque was sometimes changed at the end of the pretest and a new score was then manually computed.
DOI: 10.6084/m9.figshare.830418
title: Ancestral state reconstruction batch, tree and output files from BayesTraits

description: Ancestral state reconstruction batch, tree and output files from BayesTraits. Output files have been modified for viewing in Tracer 1.5, so that all settings and inputs for each run are approximately halfway down the file. Trees with branch lengths free to vary are found in file play6.tre, whilst ultrametric trees are in file play11.tre
DOI: 10.6084/m9.figshare.830416
title: Appendix S1 Species newly sequenced for this study

description: Appendix S1 Species newly sequenced for this study, presented as follows: Species Project reference number [Section-Subsection] Voucher specimen and Provincial locality: trnSG Genbank accession. Taxonomic information for Oxalis is presented sensu Salter (1944). Species described since Salter (1944) or undescribed species are assigned a placement in inverted commas, based on the original description or on a presumed placement according to morphology. Equivalent information for previously sequenced taxa is found in Oberlander, K.C., Dreyer, L.L. & Bellstedt, D.U. (2011) Molecular phylogenetics and origins of southern African Oxalis. Taxon, 60, 1667–1677.
DOI: 10.6084/m9.figshare.831432.v8
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830416.v1
title: Appendix S1 Species newly sequenced for this study

description: Appendix S1 Species newly sequenced for this study, presented as follows: Species Project reference number [Section-Subsection] Voucher specimen and Provincial locality: trnSG Genbank accession. Taxonomic information for Oxalis is presented sensu Salter (1944). Species described since Salter (1944) or undescribed species are assigned a placement in inverted commas, based on the original description or on a presumed placement according to morphology. Equivalent information for previously sequenced taxa is found in Oberlander, K.C., Dreyer, L.L. & Bellstedt, D.U. (2011) Molecular phylogenetics and origins of southern African Oxalis. Taxon, 60, 1667–1677.
DOI: 10.6084/m9.figshare.830423.v2
title: Learning data in flight simulator -result

description: This file countains the computed data of learning experiments done in the torque meter. It mainly correspond to self-learning experiments performed by Dr. Julien Colomb during his post doc. You can access the raw data for each experiment: the figshareid leads you to figshare fileset article, and rawfile_name corresponds to the name of the file uploaded in that article. (not yet available) Note that pretest values may be different in the computed data file than in the raw file, because the 0 torque was sometimes changed at the end of the pretest and a new score was then manually computed.
DOI: 10.6084/m9.figshare.830407
title: Planowanie przychodów ze sprzedaży na przykładzie przedsiębiorstwa z branży 51

description: Planowanie przychodów ze sprzedaży na przykładzie przedsiębiorstw z branży 51
DOI: 10.6084/m9.figshare.830408
title: Short-term financial planing

description: Krótkoterminowe planowanie finansowe wybranej spólki z branży 51
DOI: 10.6084/m9.figshare.830423.v4
title: Learning data in flight simulator -result

description: This file countains the computed data of learning experiments done in the torque meter. It mainly correspond to self-learning experiments performed by Dr. Julien Colomb during his post doc. You can access the raw data for each experiment: the figshareid leads you to figshare fileset article, and rawfile_name corresponds to the name of the file uploaded in that article. Note that pretest values may be different in the computed data file than in the raw file, because the 0 torque was sometimes changed at the end of the pretest and a new score was then manually computed.
DOI: 10.6084/m9.figshare.831432.v9
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. m_grow3_rho.tpl = tpl file for admb program with correlation between k and linf Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830406
title: Gaussian Job Archive for C14H12Cl6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.830407.v1
title: Planowanie przychodów ze sprzedaży na przykładzie przedsiębiorstwa z branży 51

description: Planowanie przychodów ze sprzedaży na przykładzie przedsiębiorstw z branży 51
DOI: 10.6084/m9.figshare.830408.v1
title: Short-term financial planing

description: Krótkoterminowe planowanie finansowe wybranej spólki z branży 51
DOI: 10.6084/m9.figshare.830423.v3
title: Learning data in flight simulator -result

description: This file countains the computed data of learning experiments done in the torque meter. It mainly correspond to self-learning experiments performed by Dr. Julien Colomb during his post doc. You can access the raw data for each experiment: the figshareid leads you to figshare fileset article, and rawfile_name corresponds to the name of the file uploaded in that article. (not yet available) Note that pretest values may be different in the computed data file than in the raw file, because the 0 torque was sometimes changed at the end of the pretest and a new score was then manually computed.
DOI: 10.6084/m9.figshare.830406.v1
title: Gaussian Job Archive for C14H12Cl6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.831432.v11
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: I report the flow of analyses for reproducing the computations and figures related to the manuscript "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" currently under review at PLoS Computational Biology. Please start by reading the README.txt file. All files necessary to reproduce the analyses are then in the EBgrowth.zip file. m_grow3_rho.tpl = tpl file for admb program with correlation between k and linf Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.831432.v10
title: EBgrowth - Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method

description: In the file EBgrowth synth.r I report the flow of analyses for reproducing the computations and figures related to the manuscript EBgrowth_preprint. The title of the manuscript is: "Determining individual variation in growth and its implication for life history and population processes using the Empirical Bayes method" All files necessary to reproduce the analyses are in the EBgrowth.zip file. m_grow3_rho.tpl = tpl file for admb program with correlation between k and linf Models have been fitted using the free software ADMB ver 11 (http://admb-project.org/) in combination with R (http://cran.r-project.org/) Please drop me a line at simon.vincenz@gmail.com for feedback and comments.
DOI: 10.6084/m9.figshare.830401
title: Introductions to Bioinformatics

description: A collection of similar but different presentations I've made aimed at introducing bioinformatics to bench biologists.
DOI: 10.6084/m9.figshare.830399
title: Association between shell morphology of micro-land snails (genus Plectostoma) and their predator’s predatory behaviour

description: Liew, T. S., & Schilthuizen, M. (2013). Association between shell morphology of micro-land snails (genus Plectostoma) and their predator’s predatory behaviour (No. e86v1). PeerJ PrePrints. Supporting Information File S1. Field observation and literature review of Rathousiidae slugs and Lampyridae beetle larvae predatory behaviours (Tables: S1 – S3). File S2. Raw data and supplementary information for results (Tables: S1 – S4, Figures: S1 – S23). File S3. Raw data and R script for data analysis for all tests. File S4. Raw data for Test 2 (c): Effectiveness of prey shell whorl morphometrics against shell-apertural entry by the Atopos proboscis.