cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0187969.10fu
title: SH0187969.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.858fkf
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (The Lepidopterists' Society Season Summary, The Albert J. Cook Arthropod Research Collection, NatureServe Network Species Occurrence Data, Entomology Division, Yale Peabody Museum, MPM Milwaukee Public Museum Invertebrate Zoology Collection, International Barcode of Life project (iBOL), Academy of Natural Sciences Entomology Collection, Frost Entomological Museum)",
 "TaxonKey is Hemaris gracilis Grote & Robinson, 1865"
 ]
}

 The dataset includes 175 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210865-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvyk7m
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gnaphalium austroafricanum Hilliard"
 ]
}

 The dataset includes 47 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230684-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cek3qv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium ihrowyszczense (Zahn) Schljakov"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244706-230224095556074/datasets/export for details.
DOI: 10.15468/dl.j5npbf
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis dictyocolea S.T.Blake"
 ]
}

 The dataset includes 101 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217335-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yhzcy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium hypastrum Zahn"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244684-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5xa42
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porifera",
 "DatasetKey is CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Philippe GOURDAIN",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222239-230224095556074/datasets/export for details.
DOI: 10.15468/dl.372yvy
title: Occurrence Download

description: A dataset containing 13392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.91442 8.6438,-74.89786 8.6438,-74.89786 9.94231,-75.91442 9.94231,-75.91442 8.6438))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2018-2018"
 ]
}

 The dataset includes 13392 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264725-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsm5nh
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis dura (Zoll. & Moritzi) Merr."
 ]
}

 The dataset includes 221 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217351-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8avvvu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porifera",
 "DatasetKey is Artenvielfalt am Eich-Gimbsheimer Altrhein",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222226-230224095556074/datasets/export for details.
DOI: 10.15468/dl.mxewc2
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registros de especies focales de fauna, Departamento del Quindío"
 ]
}

 The dataset includes 64 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264721-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjm5fk
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myrmecophila thomsoniana (Rchb.f.) Rolfe"
 ]
}

 The dataset includes 51 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044920-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqutja
title: Occurrence Download

description: A dataset containing 765 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chiranthodendron pentadactylon Larreat."
 ]
}

 The dataset includes 765 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256915-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zn3ajm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Porifera",
 "DatasetKey is CardObs : Observations naturalistes issues de l'outil CardObs-Donnée naturalistes de Jean MARMEISSE",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222248-230224095556074/datasets/export for details.
DOI: 10.15468/dl.b4dyb6
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Quillaja saponaria Molina"
 ]
}

 The dataset's 2 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264731-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44r7ad
title: Occurrence Download

description: A dataset containing 3700 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gahnia melanocarpa R.Br."
 ]
}

 The dataset includes 3700 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222252-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25713744
title: Additional file 4 - link for raw sequence data

description: Microbiota analysis was carried out in R using the DADA2 pipeline (Callahan et al., 2016), and taxonomic categories were assigned using the Silva Database (release 138.1) as a reference for the assignment (Quast et al., 2012). Alpha (Shannon, Chao1, and Simpson indices) and Beta diversity (calculated as Bray Curtis distance matrix), as well as the abundance of taxonomic categories, were calculated and analysed with R software 3.6, using the PhyloSeq (McMurdie et al., 2013), Vegan (Dixon, 2003), and microbiomeMarker (Cao et al., 2022) packages. Differences between groups regarding Alpha diversity indices were tested using a linear mixed model that included category (IUGR, NORM), time (T1, T2, T3, T4), and their interaction as fixed factors, with the litter of origin considered as a random factor. Then, a separate model within each time point was performed including only the category as a fixed factor and the litter of origin as a random factor. For Beta diversity, a dissimilarity matrix was constructed using the Bray–Curtis distance matrix as metrics, and the results were plotted using a non-metric multidimensional scaling (NMDS) plot. Furthermore, the betadisper test was conducted to test differences in the samples’ dispersion among the groups. Differences were tested using a PERMANOVA (Adonis) model with 9,999 permutations, including category, time, and their interaction, and litter of origin as factors. A second PERMANOVA model was then performed within each time point, including the category as a factor. For the differential analysis of taxa, the LEfSe algorithm was used at the genus level. Specifically, taxa were considered significant if they possessed a Linear Discriminant Analysis (LDA) score &gt; 4 and a Padj &lt; 0.05 within each time point, including the category as a factor.References: Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP: DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods 2016, 13:581-583.Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 2012, 41:D590-D596.McMurdie PJ, Holmes S: phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS One 2013, 8:e61217.Dixon P: VEGAN, a package of R functions for community ecology. Journal of Vegetation Science 2003, 14:927-930.Cao Y, Dong Q, Wang D, Zhang P, Liu Y, Niu C: microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization. Bioinformatics 2022, 38:4027-4029.<br><br>
DOI: 10.6084/m9.figshare.25713744.v1
title: Additional file 4 - link for raw sequence data

description: Microbiota analysis was carried out in R using the DADA2 pipeline (Callahan et al., 2016), and taxonomic categories were assigned using the Silva Database (release 138.1) as a reference for the assignment (Quast et al., 2012). Alpha (Shannon, Chao1, and Simpson indices) and Beta diversity (calculated as Bray Curtis distance matrix), as well as the abundance of taxonomic categories, were calculated and analysed with R software 3.6, using the PhyloSeq (McMurdie et al., 2013), Vegan (Dixon, 2003), and microbiomeMarker (Cao et al., 2022) packages. Differences between groups regarding Alpha diversity indices were tested using a linear mixed model that included category (IUGR, NORM), time (T1, T2, T3, T4), and their interaction as fixed factors, with the litter of origin considered as a random factor. Then, a separate model within each time point was performed including only the category as a fixed factor and the litter of origin as a random factor. For Beta diversity, a dissimilarity matrix was constructed using the Bray–Curtis distance matrix as metrics, and the results were plotted using a non-metric multidimensional scaling (NMDS) plot. Furthermore, the betadisper test was conducted to test differences in the samples’ dispersion among the groups. Differences were tested using a PERMANOVA (Adonis) model with 9,999 permutations, including category, time, and their interaction, and litter of origin as factors. A second PERMANOVA model was then performed within each time point, including the category as a factor. For the differential analysis of taxa, the LEfSe algorithm was used at the genus level. Specifically, taxa were considered significant if they possessed a Linear Discriminant Analysis (LDA) score &gt; 4 and a Padj &lt; 0.05 within each time point, including the category as a factor.References: Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP: DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods 2016, 13:581-583.Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO: The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 2012, 41:D590-D596.McMurdie PJ, Holmes S: phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS One 2013, 8:e61217.Dixon P: VEGAN, a package of R functions for community ecology. Journal of Vegetation Science 2003, 14:927-930.Cao Y, Dong Q, Wang D, Zhang P, Liu Y, Niu C: microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization. Bioinformatics 2022, 38:4027-4029.<br><br>
DOI: 10.15468/dl.rnjtuy
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gnaphalium andicola Phil."
 ]
}

 The dataset includes 58 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230676-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gmhw5
title: Occurrence Download

description: A dataset containing 480 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fimbristylis dipsacea (Rottb.) C.B.Clarke"
 ]
}

 The dataset includes 480 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217344-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6rb7f
title: Occurrence Download

description: A dataset listing the 171 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is South America",
 "Country is Colombia",
 "DatasetKey is one of (Registros de aves del Valle de Aburrá asociados al estudio del análisis de la conectividad ecológica funcional y estructural en el Área Metropolitana del Valle de Aburrá, Biodiversidad asociada a proyectos del Grupo EPM en el Valle de Aburrá en los años 2019 y 2020)",
 "Elevation 1502.0-1604.0m",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2013-2023"
 ]
}

 The dataset's 171 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230677-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5eswj
title: Occurrence Download

description: A dataset containing 2008 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callithrix jacchus (Linnaeus, 1758)"
 ]
}

 The dataset includes 2008 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210866-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyqybd
title: Occurrence Download

description: A dataset containing 897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Galinsoga parviflora Cav."
 ]
}

 The dataset includes 897 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244685-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsvtzs
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Schulhof und Anlagensee in Nellingen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217390-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hywwhs
title: Occurrence Download

description: A dataset containing 1200 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutia buxifolia Reissek"
 ]
}

 The dataset includes 1200 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003001-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4hvkx
title: Occurrence Download

description: A dataset containing 2771 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthropoda",
 "DatasetKey is Données piscicoles et astacicoles des cours d'eau de France métropolitaine bancarisées dans ASPE (OFB) - Données acquises selon le protocole de pêche par ambiance - ASPE - OFB",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-25.03991 31.75, 41.65954 31.75, 41.65954 71.53037, -25.03991 71.53037, -25.03991 31.75))"
 ]
}

 The dataset includes 2771 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217342-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7f63w
title: Occurrence Download

description: A dataset containing 2298 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoconyza viscosa (Mill.) D' Arcy"
 ]
}

 The dataset includes 2298 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003012-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgv5j9
title: Occurrence Download

description: A dataset containing 27437 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cyanoramphus novaezelandiae cookii (G.R.Gray, 1859), Gallirallus philippensis andrewsi (Mathews, 1911), Petroica multicolor (Gmelin, 1789), Pezoporus wallicus flaviventris North, 1911, Galaxias truttaceus Valenciennes, 1846, Nyctimystes dayi (Günther, 1897), Advena campbellii (J.E.Gray, 1834), Chaeraps tenuimanus Smith, 1912, Gudeoconcha magnifica Iredale, 1944, Patiriella vivipara Dartnall, 1969, Oligosoma lichenigerum (O'Shaughnessy, 1874), Wollumbinia bellii (Gray, 1844), Wollumbinia georgesi (Cann, 1997), Rheodytes leukops Legler, 1980, Pseudemydura umbrina Siebenrock, 1901, Nangura spinosa Covacevich, Couper & James, 1993, Liopholis montana (Donnellan, Hutchinson, Dempsey & Osborne, 2002), Liopholis kintorei (Stirling & Zietz, 1893), Liopholis guthega (Donnellan, Hutchinson, Dempsey & Osborne, 2002), Lepidodactylus listeri (Boulenger, 1889), Elusor macrurus Cann & Legler, 1994, Elseya lavarackorum (White & Archer, 1994), Elseya albagula Thomson, Georges & Limpus, 2006, Cryptoblepharus egeriae (Boulenger, 1888), Christinus guentheri Boulenger, 1885, Acanthophis hawkei Wells & Wellington, 1985, Trioza barrettae Taylor & Moir, 2014, Thaumatoperla alpina Burns & Neboiss, 1957, Sinumelon bednalli (Ponsonby, 1904), Semotrachia euzyga (Tate, 1894), Quintalia stoddartii (J.E.Gray, 1834), Pseudococcus markharveyi Gullan, 2013, Pseudocharopa whiteleggei (Brazier, 1889), Pseudocharopa ledgbirdi (Brazier, 1889), Placostylus bivaricosus (Gaskoin, 1855), Parvulastra vivipara (Dartnall, 1969), Oreixenica ptunarra Couchman, 1953, Mystivagor mastersi (Brazier, 1872), Moggridgea rainbowi (Pulleine, 1919), Mathewsoconcha suteri (Sykes, 1900), Mathewsoconcha phillipii (J.E.Gray, 1834), Marginaster littoralis Dartnall, 1970, Gudeoconcha sophiae magnifica Iredale, 1944, Dryococelus australis (Montrouzier, 1855), Cherax tenuimanus Smith, 1912, Taudactylus rheophilus Liem & Hosmer, 1973, Taudactylus pleione Czechura, 1986, Taudactylus eungellensis Liem & Hosmer, 1973, Pseudophryne pengilleyi Wells & Wellington, 1985, Pseudophryne corroboree Moore, 1953, Philoria kundagungan (Ingram & Corben, 1975), Philoria frosti Spencer, 1901, Mixophyes fleayi Corben & Ingram, 1987)"
 ]
}

 The dataset includes 27437 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010001-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.