cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5504532
title: Code and data for "KGML-ag: A Modeling Framework of Knowledge-Guided Machine Learning to Simulate Agroecosystems: A Case Study of Estimating N2O Emission using Data from Mesocosm Experiments "

description: This is code and data for manuscript: <br> "KGML-ag: A Modeling Framework of Knowledge-Guided Machine Learning to Simulate Agroecosystems: <br> A Case Study of Estimating N<sub>2</sub>O Emission using Data from Mesocosm Experiments"<br> Licheng Liu, Shaoming Xu, Zhenong Jin*, Jinyun Tang, Kaiyu Guan, Timothy J. Griffis, <br> Matt D. Erickson, Alexander L. Frie, Xiaowei Jia, Taegon Kim, Lee T. Miller, Bin Peng, Shaowei Wu, Yufeng Yang, Wang Zhou, Vipin Kumar All the files belong to Prof. Zhenong Jin, University of Minnesota, UA. jinzn@umn.edu<br> "code" foler includes code for data processing, model training, and results plotting.<br> "trained_model_saved" includes all trained model so you can use to reproduce the results showed in the study;<br> "data" includes all data presented in the study. Finetuning data is refering to Miller, L.T. , Griffis, T. J., Erickson, M. D., Turner, P. A., Deventer, M. J., Chen, Z., Yu, Z., Venterea, R.T., Baker, J. M., and Frie, A. L. (2021). Response of nitrous oxide emissions to future changes in precipitation and individual rain events. Journal of Environmental Quality, In review
description: {"references": ["Miller, L.T. , Griffis, T. J., Erickson, M. D., Turner, P. A., Deventer, M. J., Chen, Z., Yu, Z., Venterea, R.T., Baker, J. M., and Frie, A. L. (2021). Response of nitrous oxide emissions to future changes in precipitation and individual rain events. Journal of Environmental Quality, In review"]}
DOI: 10.3886/e120321v9-96200
title: Global Reactions to COVID-19 on Twitter: A Labelled Dataset with Latent Topic, Sentiment and Emotion Attributes

description: This project aims to present a large dataset for researchers to discover public conversation on Twitter surrounding the COVID-19 pandemic. As strong concerns and emotions are expressed in the publicly available tweets, we annotated seventeen latent semantic attributes for each public tweet using natural language processing techniques and machine-learning based algorithms. The latent semantic attributes include: 1) ten attributes indicating the tweet’s relevance to ten detected topics, 2) five quantitative attributes indicating the degree of intensity in the valence (i.e., unpleasantness/pleasantness) and emotional intensities across four primary emotions of fear, anger, sadness and joy, and 3) two qualitative attributes indicating the sentiment category and the most dominant emotion category, respectively.
description: Twitter posts.
DOI: 10.15468/dl.vcgbka
title: Occurrence Download

description: A dataset containing 356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Anaxyrus microscaphus (Cope, 1867)"
 ]
}

 The dataset includes 356 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286019-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsfmz4
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ambystoma leorae (Taylor, 1943)"
 ]
}

 The dataset includes 77 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036873-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfajx7
title: Occurrence Download

description: A dataset containing 1706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Varanus varius (Shaw, 1790)"
 ]
}

 The dataset includes 1706 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220442-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fk9p9s
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Geometry POLYGON ((-130.7383528944533 -59.46314024951374, -130.7383528944533 32.71876227804215, -26.26729810228821 32.71876227804215, -26.26729810228821 -59.46314024951374, -130.7383528944533 -59.46314024951374))",
 "OccurrenceStatus is Present",
 "TaxonKey is Hylonympha macrocerca Gould, 1873"
 ]
}

 The dataset includes 56 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051455-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvr7uz
title: Occurrence Download

description: A dataset containing 976 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dialium pachyphyllum Harms"
 ]
}

 The dataset includes 976 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0317985-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddjmuf
title: Occurrence Download

description: A dataset containing 11507 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phylloscopus orientalis (C.L.Brehm, 1855)"
 ]
}

 The dataset includes 11507 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0398776-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.833838
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "DatasetKey is Edinburgh (E) Herbarium Specimens",
 "DatasetKey is The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)",
 "DatasetKey is 500,000 plant Specimens from PE Herbarium in China from 1950 to 1999",
 "DatasetKey is Royal Botanic Garden Edinburgh Living Plant Collections (E)",
 "DatasetKey is Naturalis Biodiversity Center (NL) - Botany",
 "DatasetKey is NMNH Extant Specimen Records (USNM, US)",
 "DatasetKey is University of Copenhagen Arboretum",
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is Tropicos MO Specimen Data",
 "DatasetKey is The Himalayan Uplands Plant database (HUP Version 1)"
 ]
 },
 "TaxonKey is Rhododendron anthopogon D.Don"
 ]
}

 The dataset includes 314 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255102-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.934yys
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Algeria",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oenanthe hispanica (Linnaeus, 1758)"
 ]
}

 The dataset includes 108 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220418-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74jkqf
title: Occurrence Download

description: A dataset containing 1246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.36154 40.09813,5.05448 40.09813,5.05448 42.66344,-1.36154 42.66344,-1.36154 40.09813))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orobanche latisquama (F.W.Schultz) Batt."
 ]
}

 The dataset includes 1246 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286021-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4m3kh
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Barbacenia purpurea Hook."
 ]
}

 The dataset includes 122 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072299-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gdkzf9
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bolandra californica A.Gray",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315721-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7uqzv
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de anfibios - Museo de Herpetología de la Universidad de Antioquia",
 "TaxonKey is Pristimantis dorsopictus (Rivero & Serna, 1988)"
 ]
}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0364458-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xtpgo
title: Occurrence Download

description: A dataset containing 5735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Amanita excelsa (Fr.) Bertill., 1866",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5735 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004180-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9e985
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon creaseri Hartweg, 1934"
 ]
}

 The dataset includes 162 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086268-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kenqrv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cuscuta L.",
 "TaxonKey is Striga Lour.",
 "Year is greater than 2015",
 "Country is one of (Russian Federation)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220446-200613084148143/datasets/export for details.
DOI: 10.15468/dl.s5w3gv
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atractus punctiventris Amaral, 1933"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301884-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qf32e
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.775 53.275,4.825 53.275,4.825 53.325,4.775 53.325,4.775 53.275))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305309-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqgkua
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Benin",
 "TaxonKey is Ricinodendron heudelotii (Baill.) Heckel"
 ]
}

 The dataset includes 136 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008866-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8qj9h
title: Occurrence Download

description: A dataset containing 1850 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 {
 "or" : [
 "Country is Kenya",
 "Country is Tanzania, United Republic of"
 ]
 },
 "DatasetKey is Occurrence records of Lepidoptera Pollinator specimens in the National Museum of Tanzania"
 ]
}

 The dataset includes 1850 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220429-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rtyk4t
title: Occurrence Download

description: A dataset containing 2055 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus tricolor L."
 ]
}

 The dataset includes 2055 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0177777-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9yp9dg
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Phanaeus adonis Harold, 1863",
 "Year 2000-2022"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107046-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8rzp8
title: Occurrence Download

description: A dataset containing 10697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "Geometry POLYGON((77.42285 7.98926,75.4541 13.43848,73.62598 18.14941,72.74707 21.80566,72.78223 19.13379,73.2041 16.98926,73.16895 16.25098,74.39941 14.52832,75.03223 12.17285,76.29785 9.95801,76.47363 8.86816,77.42285 7.98926))"
 ]
}

 The dataset includes 10697 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262871-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7a5r9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-60.28418 2.08301,-54.2373 2.08301,-54.2373 8.09473,-60.28418 8.09473,-60.28418 2.08301))",
 "HasCoordinate is true",
 "TaxonKey is Hemiancistrus medians (Kner, 1854)"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082215-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rmep7
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave shawii subsp. shawii"
 ]
}

 The dataset includes 302 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301886-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqzw8r
title: Occurrence Download

description: A dataset containing 3296 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Akymichneumon Gauld, 1984",
 "TaxonKey is Aiura Onody & Penteado-Dias, 2006",
 "TaxonKey is Agrothereutes Förster, 1850",
 "TaxonKey is Adelognathus Holmgren, 1857"
 ]
}

 The dataset includes 3296 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0409795-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7khek
title: Occurrence Download

description: A dataset containing 299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chromodoris quadricolor (Rüppell & Leuckart, 1830))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 299 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051456-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpwgng
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vibrio coralliilyticus Ben-Haim et al., 2003"
 ]
}

 The dataset includes 43 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229981-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zshs7e
title: Occurrence Download

description: A dataset containing 35156 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis carolinensis Voigt, 1832"
 ]
}

 The dataset includes 35156 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055052-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggnf58
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asteropeia densiflora Baker"
 ]
}

 The dataset includes 144 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042806-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzdmk2
title: Occurrence Download

description: A dataset containing 14113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Chironius scurrulus (Wagler, 1824)",
 "TaxonKey is Chionactis Cope, 1860",
 "TaxonKey is Cemophora Cope, 1860",
 "TaxonKey is Anilius Oken, 1816",
 "TaxonKey is Clelia Fitzinger, 1826",
 "TaxonKey is Apostolepis Cope, 1862",
 "TaxonKey is Atractus Wagler, 1828"
 ]
 }
 ]
}

 The dataset includes 14113 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036018-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7c5h7
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Tetragonotheca repanda (Buckley) Small"
 ]
}

 The dataset includes 44 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047874-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sozpin
title: Occurrence Download

description: A dataset containing 698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1990-2018",
 "TaxonKey is Crotalus molossus Baird & Girard, 1853"
 ]
}

 The dataset includes 698 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008867-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbzqcd
title: Occurrence Download

description: A dataset listing the 183910 species recorded in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset's 183910 records were derived from 3554 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034379-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.22621409.v1
title: Additional file 9 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 9: Table S6. GO terms of the differentially expressed lncRNAs in the liver of puppies at three stages of infection.
DOI: 10.6084/m9.figshare.22621394
title: Additional file 4 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 4: Table S3. Immune- or inflammation-related GO terms of the differentially expressed mRNAs at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621403
title: Additional file 7 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 7: Table S5. The co-localization of the mRNAs of the differentially expressed lncRNAs at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621400.v1
title: Additional file 6 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 6: Table S4. KEGG pathways of the differentially expressed mRNAs at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621391.v1
title: Additional file 3 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 3: Table S2. GO terms of the differentially expressed mRNAs in the liver of puppies at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621400
title: Additional file 6 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 6: Table S4. KEGG pathways of the differentially expressed mRNAs at three stages post Toxocara canis infection.
DOI: 10.6084/m9.figshare.22621391
title: Additional file 3 of Modulation of long noncoding RNA (lncRNA) and messenger RNA (mRNA) expression in the liver of Beagle dogs by Toxocara canis infection

description: Additional file 3: Table S2. GO terms of the differentially expressed mRNAs in the liver of puppies at three stages post Toxocara canis infection.