cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3mrmfy
title: Occurrence Download

description: A dataset containing 18421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prestoea acuminata (Willd.) H.E.Moore",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18421 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127904-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mzl32s
title: Occurrence Download

description: A dataset containing 2625772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 {
 "or" : [
 "PublishingOrg is b8323864-602a-4a7d-9127-bb903054e97d",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "PublishingOrg is 6ba9a8cc-513a-4a51-bf93-6f5de8040a96",
 "PublishingOrg is 92f51af1-e917-49bc-a8ed-014ed3a77bec",
 "PublishingOrg is f314b0b0-e3dc-11d9-8d81-b8a03c50a862"
 ]
 },
 "Year 2000-2018",
 "Geometry POLYGON((10.55786 59.23218,10.55786 58.90465,11.15112 57.75108,11.8103 57.24339,11.94214 56.58369,12.68921 55.31664,14.35913 55.20395,15.08423 55.70236,16.73218 55.82597,17.45728 57.36209,18.11646 58.47072,18.84155 59.29955,10.55786 59.23218))",
 "HasCoordinate is true",
 "TaxonKey is Tracheophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2625772 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007729-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8e2rxm
title: Occurrence Download

description: A dataset containing 7805 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alchemilla glaucescens Wallr., Alchemilla glomerulans Buser, Alchemilla gorcensis Pawl., Alchemilla grossidens Buser, Alchemilla hebescens Juz., Alchemilla helvetica Brügger, Alchemilla heptagona Juz., Alchemilla heteropoda Buser, Alchemilla hirsuticaulis H.Lindb., Alchemilla hirsutissima Juz.)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "DatasetKey is one of (Pl@ntNet automatically identified occurrences, Pl@ntNet observations, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, naturgucker, Artportalen (Swedish Species Observation System), Norwegian Species Observation Service, Programme d'observation naturaliste participative avec l'application mobile INPN Espèces - Application INPN Espèces: Observations naturalistes, participatives et opportunistes, fondées sur des photographies, Species recordings from the Danish National portal Arter.dk, Lajitietokeskus/FinBIF - Notebook, general observations, Vascular plant records verified via iRecord, iRecord Surveys)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 7805 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068431-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhd8vk
title: Occurrence Download

description: A dataset containing 3986 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Testudo graeca Linnaeus, 1758"
 ]
}

 The dataset includes 3986 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132929-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqegmy
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheiracanthium furculatum Karsch, 1879"
 ]
}

 The dataset includes 120 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011091-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g9vtuq
title: Occurrence Download

description: A dataset containing 16048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "TaxonKey is Capra pyrenaica Schinz, 1838",
 "Year 1000-2024"
 ]
}

 The dataset includes 16048 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068470-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.irjgxl
title: Occurrence Download

description: A dataset containing 8328 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Actualización de las bases de datos de las colecciones de plantas vasculares y macromicetos del herbario de la UJAT (Plantas)"
 ]
}

 The dataset includes 8328 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027666-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zpk2c
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria gamwelliae Baker f."
 ]
}

 The dataset includes 13 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011623-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auxw2l
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gasteracantha sanguinolenta C.L.Koch, 1844"
 ]
}

 The dataset includes 67 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011093-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gm9n9h
title: Occurrence Download

description: A dataset containing 557069 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus spinosa L."
 ]
}

 The dataset includes 557069 records from 633 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110797-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7zhjz
title: Occurrence Download

description: A dataset containing 335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agrilus ribesi Schaefer, 1946)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 335 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042486-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u1e2g5
title: Occurrence Download

description: A dataset containing 7787 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheiracanthium C.L.Koch, 1839"
 ]
}

 The dataset includes 7787 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011096-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2ymz9
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Eleutherodactylus glandulifer Cochran, 1935"
 ]
}

 The dataset includes 178 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020669-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em5zcj
title: Occurrence Download

description: A dataset containing 633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sao Tome and Principe",
 "Geometry POLYGON((7.33246 1.90212,6.75018 1.53973,6.69159 0.78916,7.39471 0.71226,7.73163 1.62759,7.58148 1.89846,7.47894 2.03021,7.33246 1.90212))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anura"
 ]
}

 The dataset includes 633 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110800-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kuxjem
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cinara cupressi (Buckton, 1881))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 87 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042487-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqsdfo
title: Occurrence Download

description: A dataset containing 831 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deinopis MacLeay, 1839"
 ]
}

 The dataset includes 831 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011097-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3vzgk
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptocarya malayana de Kok"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011636-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz92ej
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Paroaria coronata (J.F.Miller, 1776)"
 ]
}

 The dataset includes 136 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0124595-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9bxr0
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nilus O.Pickard-Cambridge, 1876"
 ]
}

 The dataset includes 109 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011107-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gnywvr
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria glaucifolia Baker"
 ]
}

 The dataset includes 83 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011645-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qw3f2b
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.3_1",
 "Geometry POLYGON((13.31647 52.49933,13.35127 52.49933,13.35127 52.52868,13.31647 52.52868,13.31647 52.49933))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chiroptera",
 "Year 2013-2020"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127917-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmokmn
title: Occurrence Download

description: A dataset containing 880 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nemesia Audouin, 1826"
 ]
}

 The dataset includes 880 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011102-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vsnck
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cremanthodium nervosum S.W.Liu"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011649-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sm2d8j
title: Occurrence Download

description: A dataset containing 2353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera onca (Linnaeus, 1758)",
 "Year 1901-2020"
 ]
}

 The dataset includes 2353 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118735-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwnfog
title: Occurrence Download

description: A dataset containing 11648 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dolomedes Latreille, 1804"
 ]
}

 The dataset includes 11648 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011106-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33stvg
title: Occurrence Download

description: A dataset containing 223906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)",
 "Year 2019-2024"
 ]
}

 The dataset includes 223906 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068783-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc2xza
title: Occurrence Download

description: A dataset containing 14161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Rubus chamaemorus L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 14161 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018669-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1060345.10fu
title: SH1060345.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1060347.10fu
title: SH1060347.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1060348.10fu
title: SH1060348.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1060349.10fu
title: SH1060349.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18204135
title: Replication package: Improved diffusive approximation of Markov jump processes

description: Abstract This repository contains the source code, Jupyter notebooks, and precomputed simulation datasets required to reproduce the results and figures presented in the paper:





Title: Improved diffusive approximation of Markov jump processes




Authors: David Roberts, et al.




Preprint: arXiv:2512.14088




Journal: Accepted in Physical Review Research



⚠️ Note on Data To ensure reproducibility while maintaining a manageable file size, this repository includes the processed numerical exports (extracted from the raw ~100GB simulation logs) required to generate Figures 3–7. No external data downloads are required.

Repository Structure





figures/: Jupyter notebooks (.ipynb) for generating each figure in the manuscript.




data/: Contains the precomputed .npz and .npy data files loaded by the notebooks.




requirements.txt: Python dependencies required to run the environment.



Installation & Usage





Download and extract the zip file from this record.




Install dependencies: pip install -r requirements.txt.




Run the notebooks in the figures/ directory (e.g., jupyter notebook figures/fig03_make.ipynb).
DOI: 10.5281/zenodo.18204136
title: Replication package: Improved diffusive approximation of Markov jump processes

description: Abstract This repository contains the source code, Jupyter notebooks, and precomputed simulation datasets required to reproduce the results and figures presented in the paper:





Title: Improved diffusive approximation of Markov jump processes




Authors: David Roberts, et al.




Preprint: arXiv:2512.14088




Journal: Accepted in Physical Review Research



⚠️ Note on Data To ensure reproducibility while maintaining a manageable file size, this repository includes the processed numerical exports (extracted from the raw ~100GB simulation logs) required to generate Figures 3–7. No external data downloads are required.

Repository Structure





figures/: Jupyter notebooks (.ipynb) for generating each figure in the manuscript.




data/: Contains the precomputed .npz and .npy data files loaded by the notebooks.




requirements.txt: Python dependencies required to run the environment.



Installation & Usage





Download and extract the zip file from this record.




Install dependencies: pip install -r requirements.txt.




Run the notebooks in the figures/ directory (e.g., jupyter notebook figures/fig03_make.ipynb).