cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m2z47g
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Pteronura brasiliensis [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 148 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015676-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x0udkq
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008292-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zuwuda
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072613-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21963/13251
title: Hydroacoustic data EK60 Greenland Sea August-September 2017

description: Hydroacoustic data were collected in the Greenland Sea from 22 August to 12 September 2017, onboard RV Dana. The Simrad® EK60 split-beam echosounder with hull-mounted transducers at 18kHz, 38 kHz and 120 kHz recorded data continuously during the cruise, except during the deployment of the WBAT. Acoustic data from the EK60 were analyzed following Bouchard et al. (2017). CTD (conductivity-temperature-depth) profiles were used to determine sound speed in water and the coefficient of sound absorption for the acoustic analysis. Echograms were scrutinized to discard noise. The difference in mean volume backscattering strength (ΔMVBS) at 38 and 120 kHz (ΔMVBS120–38) was then used to isolate the signal of fish in echo-integration cells of 5 minutes long by 5 m deep between 14.5 m and 100 m. Only cells with ΔMVBS120–38 ranging from -10 to 5 dB re 1 m-1 were kept for further analyses. Backscatter profiles of fish were then converted into density profiles (ind. m-3) and we assumed that most of the fish signal originated from ichthyoplankton because older stages of the fish species present remain close to the bottom at this time of the year. Bouchard, C, Geoffroy, M, LeBlanc, M, Majewski, A, Gauthier, S, Walkusz, W, Reist, JD and Fortier, L. 2017. Climate warming enhances polar cod recruitment, at least transiently. Prog Oceanogr 156(Supplement C): 121-129. DOI:https://10.1016/j.pocean.2017.06.008.
description: Data used to document vertical profiles of ichthyoplankton in the Greenland Sea in August-September 2017, for inclusion in the following scientific article: Caroline Bouchard, Julek Chawarski, Maxime Geoffroy, Apasiri Klasmeier, Eva Friis Møller, Christian Mohn, Mette Dalgaard Agersted (accepted for publication) Interspecific competition and recruitment of age-0 fish in the Greenland Sea: the role of transport and preferred prey availability. Elementa: Science of the Anthropocene.
DOI: 10.15468/dl.usmrwf
title: Occurrence Download

description: A dataset containing 1775538000 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1775538000 records from 31817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082332-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dxvap
title: Occurrence Download

description: A dataset containing 30719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Automeris Hübner, 1819"
 ]
}

 The dataset includes 30719 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258917-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqjrzw
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Typhaceae",
 "GadmGid is USA.47_1",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 11 records were derived from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258928-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yg9mqj
title: Occurrence Download

description: A dataset containing 267379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "OccurrenceStatus is Present",
 "Year 2015-2023"
 ]
}

 The dataset includes 267379 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258937-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48pf6p
title: Occurrence Download

description: A dataset containing 1660161237 species occurrences available in GBIF matching the query:
{ }

 The dataset includes 1660161237 records from 18644 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010578-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e238937
title: HIFLD Open Census Block Groups

description: Block Groups (BGs) are statistical divisions of census tracts, are generally defined to contain between 600 and 3,000 people, and are used to present sample data and control block numbering. A block group consists of clusters of blocks within the same census tract that have the same first digit of their four-digit census block number. For example, blocks 3001, 3002, 3003 . . . 3999 in census tract 1210.02 belong to BG 3 in that census tract. Most BGs were delineated by local participants in the Census Bureau's Participant Statistical Areas Program. The Census Bureau delineated BGs only where a local or tribal government declined to participate and a regional organization or State Data Center was not available to participate. A BG usually covers a contiguous area. Each census tract contains at least one BG and BGs are uniquely numbered within census tract. Within the standard census geographic hierarchy, BGs never cross county or census tract boundaries but may cross the boundaries of areas any other geographic entity. Tribal census tracts and tribal BGs are separate and unique geographic areas defined within federally recognized American Indian reservations and can cross state and county boundaries. The tribal census tracts and tribal block groups may be completely different from the census tracts and block groups defined by state and county.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025
DOI: 10.3535/a94-f0f-dj8
title: Apodytes dimidiata E. Mey. ex Arn.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/2kr-2zy-34k
title: Draba eriopoda Turcz.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/rtp-ml4-7wr
title: Alkanna sieberi A. DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.3msj4p
title: Occurrence Download

description: A dataset containing 9034 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Viola pinetorum, Viola purpurea)"
 ]
}

 The dataset includes 9034 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029080-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/v9k-7b8-1aw
title: Acacia sieberiana var. sieberiana DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3886/e238937v1
title: HIFLD Open Census Block Groups

description: Block Groups (BGs) are statistical divisions of census tracts, are generally defined to contain between 600 and 3,000 people, and are used to present sample data and control block numbering. A block group consists of clusters of blocks within the same census tract that have the same first digit of their four-digit census block number. For example, blocks 3001, 3002, 3003 . . . 3999 in census tract 1210.02 belong to BG 3 in that census tract. Most BGs were delineated by local participants in the Census Bureau's Participant Statistical Areas Program. The Census Bureau delineated BGs only where a local or tribal government declined to participate and a regional organization or State Data Center was not available to participate. A BG usually covers a contiguous area. Each census tract contains at least one BG and BGs are uniquely numbered within census tract. Within the standard census geographic hierarchy, BGs never cross county or census tract boundaries but may cross the boundaries of areas any other geographic entity. Tribal census tracts and tribal BGs are separate and unique geographic areas defined within federally recognized American Indian reservations and can cross state and county boundaries. The tribal census tracts and tribal block groups may be completely different from the census tracts and block groups defined by state and county.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025
DOI: 10.3886/e238938
title: HIFLD Open Census Designated Places

description: Census Designated Places (CDPs) are the statistical counterparts of incorporated places and are delineated to provide data for settled concentrations of population that are identifiable by name but are not legally incorporated under the laws of the state in which they are located. The boundaries usually are defined in cooperation with local or tribal officials and generally updated prior to each decennial census. These boundaries, which usually coincide with visible features or the boundary of an adjacent incorporated place or another legal entity boundary, have no legal status, nor do these places have officials elected to serve traditional municipal functions. CDP boundaries may change from one decennial census to the next with changes in the settlement pattern; a CDP with the same name as in an earlier census does not necessarily have the same boundary. CDPs must be contained within a single state and may not extend into an incorporated place. There are no population size requirements for CDPs. Hawaii is the only state that has no incorporated places recognized by the Census Bureau. All places shown in decennial census data products for Hawaii are CDPs. By agreement with the State of Hawaii, the Census Bureau does not show data separately for the city of Honolulu, which is coextensive with Honolulu County. In Puerto Rico, which also does not have incorporated places, the Census Bureau recognizes only CDPs and refers to them as comunidades or zonas urbanas. Guam also has only CDPs.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025
DOI: 10.3535/7j6-9mb-d29
title: Aristida oligantha Michx.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.amurum
title: Occurrence Download

description: A dataset containing 703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Vulpes velox"
 ]
}

 The dataset includes 703 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029082-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e238938v1
title: HIFLD Open Census Designated Places

description: Census Designated Places (CDPs) are the statistical counterparts of incorporated places and are delineated to provide data for settled concentrations of population that are identifiable by name but are not legally incorporated under the laws of the state in which they are located. The boundaries usually are defined in cooperation with local or tribal officials and generally updated prior to each decennial census. These boundaries, which usually coincide with visible features or the boundary of an adjacent incorporated place or another legal entity boundary, have no legal status, nor do these places have officials elected to serve traditional municipal functions. CDP boundaries may change from one decennial census to the next with changes in the settlement pattern; a CDP with the same name as in an earlier census does not necessarily have the same boundary. CDPs must be contained within a single state and may not extend into an incorporated place. There are no population size requirements for CDPs. Hawaii is the only state that has no incorporated places recognized by the Census Bureau. All places shown in decennial census data products for Hawaii are CDPs. By agreement with the State of Hawaii, the Census Bureau does not show data separately for the city of Honolulu, which is coextensive with Honolulu County. In Puerto Rico, which also does not have incorporated places, the Census Bureau recognizes only CDPs and refers to them as comunidades or zonas urbanas. Guam also has only CDPs.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025
DOI: 10.6084/m9.figshare.30316051
title: Early gall bladder and liver disease in the <i>CFTR</i><sup><em>-/-</em></sup> sheep

description: The initiating cellular events in cystic fibrosis (CF) hepatobiliary disease are not well characterized, in part due to lack of accessibility of primary tissues. However, enhanced longevity due to highly effective modulator therapies has generated renewed interest in key aspects of liver and gallbladder disease, and how these might be treated in people with CF (pwCF). To extend the CF hepatobiliary knowledgebase, we performed a transcriptomic analysis of liver and gallbladder development in the wild type (WT) and <i>CFTR</i><sup><em>-/-</em></sup> sheep. Bulk RNA was extracted from each tissue at specific timepoints through gestation (from 50 days to term) and used for RNA-seq. Differentially expressed genes between the timepoints within each genotype and between WT and <i>CFTR</i><sup><em>-/-</em></sup> sheep at each timepoint were identified, and then used in gene ontology process enrichment analysis to reveal altered biological processes. We find that at the molecular level, the gallbladder in the <i>CFTR</i><sup><em>-/-</em></sup> animals is both structurally and functionally compromised by mid-gestation, consistent with the observed microgallbladder phenotype. In the liver, many aspects of differentiation are apparently well-established early in gestation. However, we find functional immaturity in the <i>CFTR</i><sup><em>-/-</em></sup> liver at term, where genes associated with many key metabolic processes do not show the upregulation seen at term in WT liver. We also show that the regulatory mechanisms for the <i>CFTR</i> gene in ovine gallbladder cells are highly conserved with those elucidated at the human <i>CFTR</i>locus, further enhancing the relevance of these data to advance understanding of hepatobiliary disease in pwCF.
DOI: 10.6084/m9.figshare.30316051.v1
title: Early gall bladder and liver disease in the <i>CFTR</i><sup><em>-/-</em></sup> sheep

description: The initiating cellular events in cystic fibrosis (CF) hepatobiliary disease are not well characterized, in part due to lack of accessibility of primary tissues. However, enhanced longevity due to highly effective modulator therapies has generated renewed interest in key aspects of liver and gallbladder disease, and how these might be treated in people with CF (pwCF). To extend the CF hepatobiliary knowledgebase, we performed a transcriptomic analysis of liver and gallbladder development in the wild type (WT) and <i>CFTR</i><sup><em>-/-</em></sup> sheep. Bulk RNA was extracted from each tissue at specific timepoints through gestation (from 50 days to term) and used for RNA-seq. Differentially expressed genes between the timepoints within each genotype and between WT and <i>CFTR</i><sup><em>-/-</em></sup> sheep at each timepoint were identified, and then used in gene ontology process enrichment analysis to reveal altered biological processes. We find that at the molecular level, the gallbladder in the <i>CFTR</i><sup><em>-/-</em></sup> animals is both structurally and functionally compromised by mid-gestation, consistent with the observed microgallbladder phenotype. In the liver, many aspects of differentiation are apparently well-established early in gestation. However, we find functional immaturity in the <i>CFTR</i><sup><em>-/-</em></sup> liver at term, where genes associated with many key metabolic processes do not show the upregulation seen at term in WT liver. We also show that the regulatory mechanisms for the <i>CFTR</i> gene in ovine gallbladder cells are highly conserved with those elucidated at the human <i>CFTR</i>locus, further enhancing the relevance of these data to advance understanding of hepatobiliary disease in pwCF.
DOI: 10.3535/r0j-6l3-tq8
title: Calliandra stipulacea Benth.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.azk56j
title: Occurrence Download

description: A dataset containing 1299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Luetzelburgia auriculata"
 ]
}

 The dataset includes 1299 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029083-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17341211
title: Ebbert_lab_PBMC_long_read_single_cell_project

description: Long-read single-cell RNA sequencing provides an opportunity to understand human health and disease at a level difficult to resolve with bulk or short-read methods. This approach enables isoform-level investigation of cellular diversity and disease mechanisms and definition of cell-types, rather than using genes alone. Using a modified, microfluidic-free PIPseq workflow and computational pipeline adapted for Oxford Nanopore long-read sequencing, we generated the largest long-read single-cell dataset of human peripheral blood mononuclear cells (PBMCs) to date. This study profiled isoform usage across immune cells, integrating marker expression and isoform discovery. We identified 128 novel isoforms from known and new genes, several with distinct cell-type-specific patterns, and characterized marker gene isoform expression across cell-types. Non-canonical protein-coding variants of GZMB and CD3G were enriched in unexpected cell-types, including megakaryocytes and monocyte-derived populations. We also discovered novel transcripts from CMC1 and LYAR with cell-type-specific signatures that were the predominantly expressed transcript within the gene. This study expands versatility of long-read single-cell studies to not only relay changes in isoform signatures, but to position them within the functional context of the biology they impact. These results demonstrate the power of long-read single-cell sequencing for mapping the isoform landscape—the isonome—across tissues and disease contexts.

 

University of Kentucky Sanders-Brown Center on Aging, AG078110 to Doyle; R01AG068331 to Ebbert; GM138626 to Ebbert; NS088555 to Stowe]; Alzheimer’s Association [2019-AARG-644082 to Ebbert]; the Bright Focus Foundation [A2020161S to Ebbert]; and PhRMA Foundation Predoctoral Drug Discovery Fellowship to Heberle.
DOI: 10.5281/zenodo.17371750
title: EV Lac and HD 29697: Stellar Flare Observations

description: Hα images of EV Lacertae and HD 29697 taken with PRISM on the Perkins Telescope
DOI: 10.3535/p9e-lnj-h34
title: Acacia tortilis var. spirocarpa (Hochst. ex A. Rich.) Brenan

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.13140/rg.2.2.33441.92000
title: The fatigue-crack growth rates diagram for describing the time- & cycle-dependent crack behavior in both cortical & cancellous bone tissue.
DOI: 10.3535/es7-jvp-v10
title: Acacia polyacantha subsp. campylacantha (Hochst. ex A. Rich.) Brenan

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/qc1-n5c-nr0
title: Albizia amara subsp. sericocephala (Benth.) Brenan

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.u97nay
title: Occurrence Download

description: A dataset containing 1026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.30615 -53.87821,-67.57469 -53.87291,-67.5723 -52.09692,-69.59082 -52.09692,-69.58436 -53.87565,-69.00996 -53.88374,-68.8733 -53.88881,-68.30615 -53.87821))",
 "TaxonKey is Chloephaga rubidiceps"
 ]
}

 The dataset includes 1026 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029084-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1c0-h26-y2m
title: Rapanea Aubl.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.