cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3850323.v1
title: EIS.mdb

description: <br>Electrochemical impedance spectroscopy（（CoCr and NiCr alloys in the artificial saliva with or without S.mutans））
DOI: 10.7910/dvn/v1rjpf/3xnzuq
title: mea20161116_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/qgchth
title: mea20160722_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3850296.v1
title: OCP.mdb

description: open circuit (CoCr and Nicr in the artificial saliva with or without S.mutans)
DOI: 10.6084/m9.figshare.3850323.v2
title: EIS.mdb

description: <br>Electrochemical impedance spectroscopy（（CoCr and NiCr alloys in the artificial saliva with or without S.mutans））
DOI: 10.7910/dvn/v1rjpf/2mgbzq
title: mea20150711_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848655
title: Identification of functionally key residues in maltose transporter with an elastic network model-based thermodynamic method

description: Periplasmic binding protein-dependent maltose transport system (MBP-MalFGK<sub>2</sub>) of <i>Escherichia coli</i>, an important member of the Adenosine triphosphate-binding cassette transporter superfamily, is in charge of the transportation of maltoses across cellular membrane. Studies have shown that this transport processes are activated by the binding of maltose and are accompanied by large-scale cooperative movements between different domains which are mediated by a network of important residues related to signal transduction and allosteric regulation. In this paper, the functionally crucial residues and long-range allosteric pathway of the regulation of the system by substrate were identified by utilising a coarse-grained thermodynamic method proposed by our group. The residues whose perturbations markedly change the binding free energy between maltoses and MBP-MalFGK<sub>2</sub> were considered to be key residues. In result, the key residues in 62 clusters distributed in different subdomains were identified successfully, and the results from our calculation are highly consistent with experimental and theoretical observations. Furthermore, we explored the long-range cooperation within the transporter. These studies will help us better understand the physical mechanism of the effects of the maltose on MBP-MalFGK<sub>2</sub> by long-range allosteric modulation.
DOI: 10.6084/m9.figshare.3848655.v1
title: Identification of functionally key residues in maltose transporter with an elastic network model-based thermodynamic method

description: Periplasmic binding protein-dependent maltose transport system (MBP-MalFGK<sub>2</sub>) of <i>Escherichia coli</i>, an important member of the Adenosine triphosphate-binding cassette transporter superfamily, is in charge of the transportation of maltoses across cellular membrane. Studies have shown that this transport processes are activated by the binding of maltose and are accompanied by large-scale cooperative movements between different domains which are mediated by a network of important residues related to signal transduction and allosteric regulation. In this paper, the functionally crucial residues and long-range allosteric pathway of the regulation of the system by substrate were identified by utilising a coarse-grained thermodynamic method proposed by our group. The residues whose perturbations markedly change the binding free energy between maltoses and MBP-MalFGK<sub>2</sub> were considered to be key residues. In result, the key residues in 62 clusters distributed in different subdomains were identified successfully, and the results from our calculation are highly consistent with experimental and theoretical observations. Furthermore, we explored the long-range cooperation within the transporter. These studies will help us better understand the physical mechanism of the effects of the maltose on MBP-MalFGK<sub>2</sub> by long-range allosteric modulation.
DOI: 10.7910/dvn/v1rjpf/tplysl
title: mea20161222_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/oma8bi
title: mea20150517_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3849237.v1
title: The Road to Bribery and Corruption

description: Data used for four studies to be published in Psychological Science<br>
DOI: 10.7910/dvn/v1rjpf/5zjuw0
title: mea20160927_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3849237.v2
title: The Road to Bribery and Corruption

description: Data used for four studies to be published in Psychological Science<br>
DOI: 10.7910/dvn/v1rjpf/13mzsd
title: mea20150629_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848547
title: Epidermal cells measurements on Conostigmus longulus Dessart.

description: This dataset is a suporting information for the manuscript: Mikó et al. (in press) Malagasy <i>Conostigmus</i> (Hymenoptera: Ceraphronoidea) and the secret of scutes.<br><br>Environmental factors impact development and determine final adult body size by altering different cellular processes. Temperature and oxygen level usually impact cell size, while nutrition mostly regulates cell division.<br><br><i>Conostigmus</i> species are relatively large ceraphronoids (0.8--2.2 mm) making it feasible to observe and examine, elements of the aforementioned leather like sculpture. Scutes likely have a one to one correspondence to epidermal cells in arthropods and thus should provide information about the cellular basis of body size polyphenism.<br><br>For the morphometric analysis on scute patterns, extended focal images of the frons and the mesocutellar-axillar complex of 14 <i>Conostigmus longulus</i> Dessart 1997 specimens were taken using an Olympus BX43 compound microscope equipped with an Olympus DP73 digital camera on 200× magnification. Extended focal images were generated using the online ``extended focal imaging'' (efi) tool of an Olympus CellsensTM software. <br><br>Measurements were taken using the same software. First, a 9636 µm rectangular area was assigned on the extended focal images for recording scute pattern. The lateral vertices of the medially-positioned rectangle were adjacent with the scutoscutellar sulcus on the mesonotum, while the rectangle was positioned medially on the frons with equal distance from the anterior ocellus and the intertorular carina. Scutes overlapping this area (including scutes adjacent to the margin of the rectangle) were counted and the longest diameter of each scute was measured. Measurements (were taken on the images while constantly checking their accuracy on live view at 200–500× magnification. Body length largely depends on the relative orientations of the tagmata. The head of most species is flattened dorsoventrally and attached at its posterior end to the thorax. We used the IOS (interorbital distance (IOS, \url{http://purl.obolibrary.org/obo/HAO_0000432}) to infer body size in our statistical analysis. <br>
DOI: 10.6084/m9.figshare.3848547.v1
title: Epidermal cells measurements on Conostigmus longulus Dessart.

description: This dataset is a suporting information for the manuscript: Mikó et al. (in press) Malagasy <i>Conostigmus</i> (Hymenoptera: Ceraphronoidea) and the secret of scutes.<br><br>Environmental factors impact development and determine final adult body size by altering different cellular processes. Temperature and oxygen level usually impact cell size, while nutrition mostly regulates cell division.<br><br><i>Conostigmus</i> species are relatively large ceraphronoids (0.8--2.2 mm) making it feasible to observe and examine, elements of the aforementioned leather like sculpture. Scutes likely have a one to one correspondence to epidermal cells in arthropods and thus should provide information about the cellular basis of body size polyphenism.<br><br>For the morphometric analysis on scute patterns, extended focal images of the frons and the mesocutellar-axillar complex of 14 <i>Conostigmus longulus</i> Dessart 1997 specimens were taken using an Olympus BX43 compound microscope equipped with an Olympus DP73 digital camera on 200× magnification. Extended focal images were generated using the online ``extended focal imaging'' (efi) tool of an Olympus CellsensTM software. <br><br>Measurements were taken using the same software. First, a 9636 µm rectangular area was assigned on the extended focal images for recording scute pattern. The lateral vertices of the medially-positioned rectangle were adjacent with the scutoscutellar sulcus on the mesonotum, while the rectangle was positioned medially on the frons with equal distance from the anterior ocellus and the intertorular carina. Scutes overlapping this area (including scutes adjacent to the margin of the rectangle) were counted and the longest diameter of each scute was measured. Measurements (were taken on the images while constantly checking their accuracy on live view at 200–500× magnification. Body length largely depends on the relative orientations of the tagmata. The head of most species is flattened dorsoventrally and attached at its posterior end to the thorax. We used the IOS (interorbital distance (IOS, \url{http://purl.obolibrary.org/obo/HAO_0000432}) to infer body size in our statistical analysis. <br>
DOI: 10.7910/dvn/v1rjpf/endxmb
title: mea20160607_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848583.v1
title: Augmented Reality with Hololens - 3D models and supplementary files

description: Augmented Reality with Hololens: Experiential Architectures Embedded in the Real World<br>3D models (.fbx) and supplementary files for manuscript.<br>More details and content to follow pending completion of the manuscript.<br><br><br>
DOI: 10.7910/dvn/v1rjpf/farxvd
title: mea20161022_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848583.v2
title: Augmented Reality with Hololens - 3D models and supplementary files

description: Augmented Reality with Hololens: Experiential Architectures Embedded in the Real World<br>3D models (.fbx) and supplementary files for manuscript.
DOI: 10.7910/dvn/v1rjpf/cji2xj
title: mea20160121_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/isjcoe
title: mea20150721_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848457
title: Table 1. The Donkerhuk batholith, Namibia: A giant S-type granite emplaced in the mid crust, in a fore-arc setting

description: Partial chemical analyses for rocks of the main Donkerhuk batholith.
DOI: 10.7910/dvn/v1rjpf/8ielyt
title: mea20150516_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848445
title: Age estimates of <i>Frullania</i> (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

description: <i>Frullania</i> Raddi is an extant genus of liverworts (Bryophytes) widespread around the world. It belongs to the family Frullaniaceae Lorch., with a large number of species distributed into several subgenera, sections and subsections according with different morphological classifications. As shown in previous studies, most <i>Frullania</i> sub-generic classifications are supported by molecular data, indicating that morphological characters appear well suitable to discriminate species. However, deep among-clade relationships remain unclear, probably due to the rapid diversification of main clades, paralleling other plant lineages. In this study, we reconstruct <i>Frullania</i> phylogeny based on available molecular data used in previous studies, and we present time estimates for the origin of its main branches. Results supported the monophyly of most subgenera as demonstrated in previous studies and supported a rapid diversification of these main lineages. Time estimates under a relaxed molecular clock and with integrated fossil evidence and nucleotide mutation rates further suggested a Jurassic origin of the genus and a rapid diversification during Palaeogene and Neogene. This may have been influenced by geographical and climate changes during these periods as predicted for most leafy liverworts.
DOI: 10.7910/dvn/v1rjpf/qslmqu
title: mea20151205_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848445.v1
title: Age estimates of <i>Frullania</i> (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution

description: <i>Frullania</i> Raddi is an extant genus of liverworts (Bryophytes) widespread around the world. It belongs to the family Frullaniaceae Lorch., with a large number of species distributed into several subgenera, sections and subsections according with different morphological classifications. As shown in previous studies, most <i>Frullania</i> sub-generic classifications are supported by molecular data, indicating that morphological characters appear well suitable to discriminate species. However, deep among-clade relationships remain unclear, probably due to the rapid diversification of main clades, paralleling other plant lineages. In this study, we reconstruct <i>Frullania</i> phylogeny based on available molecular data used in previous studies, and we present time estimates for the origin of its main branches. Results supported the monophyly of most subgenera as demonstrated in previous studies and supported a rapid diversification of these main lineages. Time estimates under a relaxed molecular clock and with integrated fossil evidence and nucleotide mutation rates further suggested a Jurassic origin of the genus and a rapid diversification during Palaeogene and Neogene. This may have been influenced by geographical and climate changes during these periods as predicted for most leafy liverworts.
DOI: 10.6084/m9.figshare.3848439
title: Ecotoxicity interspecies QAAR models from <i>Daphnia</i> toxicity of pharmaceuticals and personal care products<sup>$</sup>

description: Pharmaceutical and Personal Care Products (PPCPs) became a class of contaminants of emerging concern because are ubiquitously detected in surface water and soil, where they can affect wildlife. Ecotoxicological data are only available for a few PPCPs, thus modelling approaches are essential tools to maximize the information contained in the existing data. <i>In silico</i> methods may be helpful in filling data gaps for the toxicity of PPCPs towards various ecological indicator organisms. The good correlation between toxicity toward <i>Daphnia magna</i> and those on two fish species (<i>Pimephales promelas</i> and <i>Oncorhynchus mykiss</i>), improved by the addition of one theoretical molecular descriptor, allowed us to develop predictive models to investigate the relationship between toxicities in different species. The aim of this work is to propose quantitative activity–activity relationship (QAAR) models, developed in QSARINS and validated for their external predictivity. Such models can be used to predict the toxicity of PPCPs to a particular species using available experimental toxicity data from a different species, thus reducing the tests on organisms of higher trophic level. Similarly, good QAAR models, implemented by molecular descriptors to improve the quality, are proposed here for fish interspecies. We also comment on the relevance of autocorrelation descriptors in improving all studied interspecies correlations.
DOI: 10.6084/m9.figshare.3848439.v1
title: Ecotoxicity interspecies QAAR models from <i>Daphnia</i> toxicity of pharmaceuticals and personal care products<sup>$</sup>

description: Pharmaceutical and Personal Care Products (PPCPs) became a class of contaminants of emerging concern because are ubiquitously detected in surface water and soil, where they can affect wildlife. Ecotoxicological data are only available for a few PPCPs, thus modelling approaches are essential tools to maximize the information contained in the existing data. <i>In silico</i> methods may be helpful in filling data gaps for the toxicity of PPCPs towards various ecological indicator organisms. The good correlation between toxicity toward <i>Daphnia magna</i> and those on two fish species (<i>Pimephales promelas</i> and <i>Oncorhynchus mykiss</i>), improved by the addition of one theoretical molecular descriptor, allowed us to develop predictive models to investigate the relationship between toxicities in different species. The aim of this work is to propose quantitative activity–activity relationship (QAAR) models, developed in QSARINS and validated for their external predictivity. Such models can be used to predict the toxicity of PPCPs to a particular species using available experimental toxicity data from a different species, thus reducing the tests on organisms of higher trophic level. Similarly, good QAAR models, implemented by molecular descriptors to improve the quality, are proposed here for fish interspecies. We also comment on the relevance of autocorrelation descriptors in improving all studied interspecies correlations.
DOI: 10.7910/dvn/v1rjpf/v0dult
title: mea20150121_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/3eq2ta
title: mea20150410_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/butuoo
title: mea20150820_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848322
title: Digital appendix to Claire Villette's PhD thesis

description: Digital appendix to Claire Villette's PhD thesis entitled 'Structural Meso and Microscale Finite Element Based Approaches for the Prediction of Bone Architecture and Fracture'
DOI: 10.6084/m9.figshare.3848322.v1
title: Digital appendix to Claire Villette's PhD thesis

description: Digital appendix to Claire Villette's PhD thesis entitled 'Structural Meso and Microscale Finite Element Based Approaches for the Prediction of Bone Architecture and Fracture'
DOI: 10.7910/dvn/v1rjpf/nz0prc
title: mea20160813_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/fsup1w
title: mea20160101_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848310
title: Introduction to parallel R

description: Slides from an introduction to parallel R talk on Sep 22, 2016 to the University of Colorado Boulder Computational Sciences and Engineering meetup.<br>
DOI: 10.7910/dvn/v1rjpf/8zqp9v
title: mea20160617_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848310.v1
title: Introduction to parallel R

description: Slides from an introduction to parallel R talk on Sep 22, 2016 to the University of Colorado Boulder Computational Sciences and Engineering meetup.<br>
DOI: 10.6084/m9.figshare.3848310.v3
title: Introduction to parallel R

description: Slides from an introduction to parallel R talk on Sep 22, 2016 to the University of Colorado Boulder Computational Sciences and Engineering meetup.<br>
DOI: 10.7910/dvn/v1rjpf/lshoek
title: mea20150621_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848310.v2
title: Introduction to parallel R

description: Slides from an introduction to parallel R talk on Sep 22, 2016 to the University of Colorado Boulder Computational Sciences and Engineering meetup.<br>
DOI: 10.7910/dvn/v1rjpf/xb2g8d
title: mea20151005_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/xqjqms
title: mea20150202_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3848280.v1
title: MSc thesis papers .xls

description: test<br>
DOI: 10.7910/dvn/v1rjpf/oezhq2
title: mea20151217_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/2jtsvf
title: mea20150131_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/dkdx8h
title: mea20160520_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ktdpf4
title: mea20150406_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/sdivee
title: mea20160326_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/ounho8
title: mea20150203_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/eeqoge
title: mea20160219_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/jpzgv9
title: mea20150623_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3847812
title: Attention and interpretation processes and trait anger experience, expression, and control

description: This study explored attention and interpretation biases in processing facial expressions as correlates of theoretically distinct self-reported anger experience, expression, and control. Non-selected undergraduate students (<i>N</i> = 101) completed cognitive tasks measuring attention bias, interpretation bias, and Spielberger’s State-Trait Anger Expression Inventory (STAXI-2). Attention bias toward angry faces was associated with higher trait anger and anger expression and with lower anger control-in and anger control-out. The propensity to quickly interpret ambiguous faces as angry was associated with greater anger expression and its subcomponent of anger expression-out and with lower anger control-out. Interactions between attention and interpretation biases did not contribute to the prediction of any anger component suggesting that attention and interpretation biases may function as distinct mechanisms. Theoretical and possible clinical implications are discussed.
DOI: 10.7910/dvn/v1rjpf/paz8k2
title: mea20160124_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3847812.v1
title: Attention and interpretation processes and trait anger experience, expression, and control

description: This study explored attention and interpretation biases in processing facial expressions as correlates of theoretically distinct self-reported anger experience, expression, and control. Non-selected undergraduate students (<i>N</i> = 101) completed cognitive tasks measuring attention bias, interpretation bias, and Spielberger’s State-Trait Anger Expression Inventory (STAXI-2). Attention bias toward angry faces was associated with higher trait anger and anger expression and with lower anger control-in and anger control-out. The propensity to quickly interpret ambiguous faces as angry was associated with greater anger expression and its subcomponent of anger expression-out and with lower anger control-out. Interactions between attention and interpretation biases did not contribute to the prediction of any anger component suggesting that attention and interpretation biases may function as distinct mechanisms. Theoretical and possible clinical implications are discussed.
DOI: 10.6084/m9.figshare.3847776
title: Family Policies Dataset UK

description: The database provides information on the policies for families in the UK which have existed since 1997. The database includes data on the structure, functioning, eligibility criteria and legislative basis of cash and tax allowance policies, leave and pay policies and childcare policies. The database is the first of its kind to provide such extensive and detailed information on family policies in the UK and it can be of use for researchers and policy makers alike.
DOI: 10.7910/dvn/v1rjpf/nrzn9a
title: mea20150418_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3847776.v1
title: Family Policies Dataset UK

description: The database provides information on the policies for families in the UK which have existed since 1997. The database includes data on the structure, functioning, eligibility criteria and legislative basis of cash and tax allowance policies, leave and pay policies and childcare policies. The database is the first of its kind to provide such extensive and detailed information on family policies in the UK and it can be of use for researchers and policy makers alike.
DOI: 10.7910/dvn/v1rjpf/zv1r0y
title: mea20160306_03.txt.gz

description: :unav
DOI: 10.7910/dvn/v1rjpf/oibj0a
title: mea20150831_03.txt.gz

description: :unav
DOI: 10.6084/m9.figshare.3847494
title: BMC interprofessional agreement data (raw).xlsx

description: This file contains the outcomes from two parallel electronic surveys to CPs and GPs in Slovakia addressed to identify the key factors about their current teamwork. The results found in this file represent each participants answers to questions about: teamwork experience, attitudes to collaborative practice, preferred method of communication, preferred tasks done by CPs, anticipated areas of future collaboration and perceived barriers to collaborative practice. Ethical approval No. 5/2016 was granted by the Ethics Committee for biomedical research, Faculty of Pharmacy, Comenius University in Bratislava, Slovakia.
DOI: 10.7910/dvn/v1rjpf/szvxco
title: mea20161003_03.txt.gz

description: :unav