cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25422/azu.data.17086889.v1
title: Arctic Amplification Feedbacks in Siberia: case study of the Yenisei River Basin

description: The submission includes 1) tree-ring data and hydrological gauge data used in river discharge and water balance modeling, 2) Environmental Research Letters accepted manuscript and supplemental materials explaining and discussing the data.Abstract<br>The Yenisei River is the largest contributor of freshwater and energy fluxes among all rivers draining to the Arctic Ocean. Modeling long-term variability of Eurasian runoff to the Arctic Ocean is complicated by the considerable variability of river discharge in time and space, and the monitoring constraints imposed by a sparse gauged-flow network and paucity of satellite data. We quantify tree growth response to river discharge at the upper reaches of the Yenisei River in Tuva, South Siberia. Two regression models built from eight tree-ring width chronologies of <i>Larix sibirica </i>are applied to reconstruct winter (Nov–Apr) discharge for the period 1784-1997 (214 years), and annual (Oct–Sept) discharge for the period 1701–2000 (300 years). The Nov–Apr model explains 52% of the discharge variance whereas Oct–Sept explains 26% for the calibration intervals 1927–1997 and 1927-2000, respectively. This new hydrological archive doubles the length of the instrumental discharge record at the Kyzyl gauge and resets the temporal background of discharge variability back to 1784. The reconstruction finds a remarkable 80% upsurge in winter flow over the last 25 years, which is unprecedented in the last 214 years. In contrast, annual discharge fluctuated normally for this system, with only a 7% increase over the last 25 years. Water balance modeling with CRU data manifests a significant discrepancy between decadal variability of the gauged flow and climate data after 1960. We discuss the impact on the baseflow rate change of both the accelerating permafrost warming in the discontinuous zone of South Siberia and widespread forest fires. The winter discharge accounts for only one third of the annual flow, yet the persistent 25-year upsurge is alarming. This trend is likely caused by Arctic Amplification, which can be further magnified by increased winter flow delivering significantly more fresh water to the Kara Sea during the cold season.<br><br><i><br>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</i><br>
DOI: 10.5281/zenodo.5661232
title: Molecular Dynamics Study on the Shock Induced Spallation of Polyethylene

description: This repository contains the LAMMPS models (data files) we used in our recent work. More information and the required LAMMPS files to run shock simulations are available here: https://github.com/nuwan-d/shock_response_pe
DOI: 10.5281/zenodo.5661231
title: Molecular Dynamics Study on the Shock Induced Spallation of Polyethylene

description: This repository contains the LAMMPS models (data files) we used in our recent work. More information and the required LAMMPS files to run shock simulations are available here: https://github.com/nuwan-d/shock_response_pe
DOI: 10.6084/m9.figshare.16528950
title: SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity

description: Supplementary material for "SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity."
DOI: 10.6084/m9.figshare.16528950.v1
title: SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity

description: Supplementary material for "SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity."
DOI: 10.5281/zenodo.5693059
title: Confocal data of Omma forte, holotype, NIGP176634

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for the holotype of <em>Omma forte</em> (NIGP176634) from mid-Cretaceous Burmese amber. Additional confocal data for <em>Omma</em> cf. <em>manukyani</em> (NIGP176635) are also provided. This dataset is associated with the publication "New species of <em>Omma </em>Newman from mid-Cretaceous Burmese amber (Coleoptera: Archostemata: Ommatidae)" (DOI:10.3897/dez.68.74174). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.
DOI: 10.5281/zenodo.5693058
title: Confocal data of Omma forte, holotype, NIGP176634

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for the holotype of <em>Omma forte</em> (NIGP176634) from mid-Cretaceous Burmese amber. Additional confocal data for <em>Omma</em> cf. <em>manukyani</em> (NIGP176635) are also provided. This dataset is associated with the publication "New species of <em>Omma </em>Newman from mid-Cretaceous Burmese amber (Coleoptera: Archostemata: Ommatidae)" (DOI:10.3897/dez.68.74174). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.
DOI: 10.5281/zenodo.5747706
title: Dataset underpinning "A pilot randomised trial of a brief virtual reality scenario in smokers unmotivated to quit: Assessing the feasibility of recruitment"

description: This is the dataset underpinning the manuscript titled "A pilot randomised trial of a brief virtual reality scenario in smokers unmotivated to quit: Assessing the feasibility of recruitment".
DOI: 10.5281/zenodo.5747705
title: Dataset underpinning "A pilot randomised trial of a brief virtual reality scenario in smokers unmotivated to quit: Assessing the feasibility of recruitment"

description: This is the dataset underpinning the manuscript titled "A pilot randomised trial of a brief virtual reality scenario in smokers unmotivated to quit: Assessing the feasibility of recruitment".
DOI: 10.5517/ccdc.csd.cc1zb5k1
title: CCDC 1827033: Experimental Crystal Structure Determination

description: Related Article: zhang honggang|2018|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc20h4l8
title: CCDC 1861599: Experimental Crystal Structure Determination

description: Related Article: Zilya Yamaleeva, Olga Kataeva, Ruslan Shekurov, Leysan Gilmanova, Mikhail Khrizanforov, Vasily Milyukov, Tatiana Gerasimova, Timur Burganov, Airat Khamatgalimov, Sergey Katsyuba, Valeri Kovalenko, Yulia Budnikova, Oleg Sinyashin, Yulia Krupskaya, Vladislav Katayev, Bernd Buchner, Volodimir Bon, Irena Senkovska, Stefan Kaskel|2018|CSD Communication|||
description: Related Article: Ruslan Shekurov, Vera Khrizanforova, Leysan Gilmanova, Mikhail Khrizanforov, Vasily Miluykov, Olga Kataeva, Zilya Yamaleeva, Timur Burganov, Tatiana Gerasimova, Airat Khamatgalimov, Sergey Katsyuba, Valeri Kovalenko, Yulia Krupskaya, Vladislav Kataev, Bernd Büchner, Volodymyr Bon, Irena Senkovska, Stefan Kaskel, Aidar Gubaidullin, Oleg Sinyashin, Yulia Budnikova|2019|Dalton Trans.|48|3601|doi:10.1039/C8DT04618B
DOI: 10.5517/ccdc.csd.cc25q143
title: CCDC 2017174: Experimental Crystal Structure Determination

description: Related Article: E. Martsinko, I. Seifullina, E. Chebanenko, V. Dyakonenko, S. Shishkina|2020|Odes'kyi Nat.Univ. imeni II Mechnikova. Visnyk. Khimiya|25|24|doi:10.18524/2304-0947.2020.4(76).216921
DOI: 10.5281/zenodo.4461652
title: Code, data and scripts to study wave dynamics in asymmetric material

description: Supplementary data for [1] Vladislav A. Yastrebov. "Wave propagation through an elastically-asymmetric architected material", 2021, https://arxiv.org/abs/1712.06294v2 See "Readme.md" and indivual "Readme.md" files in folders: "data", "src", "fig"
description: {"references": ["Vladislav A. Yastrebov. \"Wave propagation through an elastically-asymmetric architected material\", 2021, https://arxiv.org/abs/1712.06294v2"]}
DOI: 10.5281/zenodo.4457086
title: Code, data and scripts to study wave dynamics in asymmetric material

description: Supplementary data for [1] Vladislav A. Yastrebov. "Wave propagation through an elastically-asymmetric architected material", 2021, https://arxiv.org/abs/1712.06294v2 See "Readme.md" and indivual "Readme.md" files in folders: "data", "src", "fig"
description: {"references": ["Vladislav A. Yastrebov. \"Wave propagation through an elastically-asymmetric architected material\", 2021, https://arxiv.org/abs/1712.06294v2"]}
DOI: 10.25345/c5sw0m
title: MassIVE MSV000088484 - A CpxA Phosphatase Inhibitor Activates CpxRA and is an Effective Treatment for Uropathogenic Escherichia coli in a Murine Model of Infection
title: For label-free quantitative proteomics, cell pellets from 5 independent experiments were subjected for protein extraction followed by LC-MS/MS. LC-MS/MS analysis was performed on a Dionex UltiMate 3000 (Thermo Fisher Scientific) system connected to a Q-Exactive HF-X mass spectrometer (Thermo Fisher Scientific). Peptide spectrum matching of MS/MS spectra was searched against the UniProt E. coli CFT073-UPEC database (TaxID:199310) using the Sequest algorithm within Proteome Discoverer v 2.4 software (Thermo Fisher Scientific). The Sequest database search was performed with the following parameters: trypsin enzyme cleavage specificity, 2 possible missed cleavages, 10 ppm mass tolerance for precursor ions, 0.02 Da mass tolerance for fragment ions. Search parameters permitted dynamic modification of methionine oxidation (+15.9949 Da) and static modification of carbamidomethylation (+57.0215 Da) on cysteine. Peptide assignments from the database search were filtered to a 1% False Discovery Rate. The relative label-free quantitative and comparative among the samples were performed using the Minora algorithm and Proteome Discoverer 2.4 software. Differential abundance of proteins between conditions was defined as a 1.5-fold change in relative abundance with an adjusted p-value &lt; 0.05.
DOI: 10.22008/fk2/murubn/fzz7mr
title: G100_Agatdal_70V1_N_400dpi.tif

description: :unav
DOI: 10.22008/fk2/murubn/h6wqle
title: G100_Agatdal_70V1_N_400dpi.pdf

description: :unav
DOI: 10.6084/m9.figshare.17089280
title: Master Spread Sheets

description: The main dataset for <i>iPFlakies: A Framework for Detecting and Fixing Python Order-Dependent Flaky Tests</i>
DOI: 10.6084/m9.figshare.17089280.v2
title: Master Spread Sheets

description: The main dataset for <i>iPFlakies: A Framework for Detecting and Fixing Python Order-Dependent Flaky Tests</i>
DOI: 10.6084/m9.figshare.17089280.v1
title: Master Spread Sheets

description: The main dataset for <i>iPFlakies: A Framework for Detecting and Fixing Python Order-Dependent Flaky Tests</i>
DOI: 10.5281/zenodo.5534703
title: Living room environment

description: An audio-visual model for virtual reality of the living room laboratory at the CvO university Oldenburg. The model has been created for a highly accurate acoustic rendering over loudspeaker arrays and headphones and for visual representation in virtual reality. The package encompasses an accurate spatial geometric model of the living room and adjacent kitchen, which can be used for acoustic simulations, and a visual model for virtual reality. It further includes a definition of two acoustic scenes for the purpose of audiology and hearing research together with the associated measurements of the acoustic impulse responses using a binaural recording system (binaural room impulse responses), a spherical microphone array, and omnidirectional microphones.
description: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – Projektnummer 352015383 – SFB 1330, Project C4 and C5.
DOI: 10.6084/m9.figshare.16685293
title: Monitoring the Effect of Transdermal Drug Delivery Patches on the Skin using Terahertz Sensing

description: THz measurements of the skin of 5 subjects before and after the application of partially and fully occlusive patches for transdermal drug delivery. The patches were applied for 24 hours, the skin regions were then measured immediately after patch removal and 30 minutes and 4hours after the patches were removed. In addition to changing the backing material of the patch we also varied the propylene glycol content of the patch to observe the effects on the skin.<br>Regions on the left arm were treated with the partially occlusive patches while the right arm was treated with fully occlusive patches. Regions are numbered 1-4 where 1=3% propylene glycol, 2= control, 3= 6% propylene glycol, 4=0% propylene glycol.<br>The txt files are structured so the top two rows are the voltages measured by the pressure sensors at each time point. The first column is the time in ps and the following columns are the measured THz pulses for each of the 240 measurements, acquired every 0.25 seconds.
DOI: 10.6084/m9.figshare.16685293.v1
title: Monitoring the Effect of Transdermal Drug Delivery Patches on the Skin using Terahertz Sensing

description: THz measurements of the skin of 5 subjects before and after the application of partially and fully occlusive patches for transdermal drug delivery. The patches were applied for 24 hours, the skin regions were then measured immediately after patch removal and 30 minutes and 4hours after the patches were removed. In addition to changing the backing material of the patch we also varied the propylene glycol content of the patch to observe the effects on the skin.<br>Regions on the left arm were treated with the partially occlusive patches while the right arm was treated with fully occlusive patches. Regions are numbered 1-4 where 1=3% propylene glycol, 2= control, 3= 6% propylene glycol, 4=0% propylene glycol.<br>The txt files are structured so the top two rows are the voltages measured by the pressure sensors at each time point. The first column is the time in ps and the following columns are the measured THz pulses for each of the 240 measurements, acquired every 0.25 seconds.
DOI: 10.34808/2vvd-9b19
title: Sea surface temperature in the Baltic Sea derived from Landsat 8 satellite data - path 193

description: The data set contains high resolution sea surface temperature (SST) maps estimated from Landsat 8 Level 1 Thermal Infrared Sensor (TIRS) data using NLSST algorithm.  SST was calculated only for granules (185 x 180 km) from satellite path number 193, that covered at least 2000 km2 of the cloud-free area of the Baltic Sea.
The Landsat mission is run by the Earth Observation Program of the National Aeronautics and Space Administration (NASA). Launched in 2013, Landsat 8 carries two instruments: a Thermal Infrared Sensor (TIRS) collecting infrared data of 100-m resolution and an Operational Land Imager (OLI) which collects data of 30-m resolution in the visible (VIS), near-infrared (NIR) and short-wave infrared (SWIR) portions of the spectrum. Data from both instruments are provided by the USGS in a common grid in UTM projection with a resolution of 30 m. Each satellite path is revisited every 16 days. Of the path 193, nine granules cover the Baltic Sea area (Figure 1).
The NLSST algorithm is an empirical formula utilising split-window approach to atmospheric correction (Walton et al. 1998). To calculate SST, Level 1 satellite data form the Collection 2 (USGS/NASA Landsat Program) and NLSST coefficients derived for the Baltic Sea in reference to in situ bulk temperatures from buoys and platforms were used (Bradtke 2021). Clouded areas were masked (fill value -999). The validation of the results for the period 2013-2019 showed a root mean square error (RMSE) 0.65 °C and bias 0.02 °C.
The SST maps are provided in GeoTIFF format using the naming convention: LC08_SST_YYYYMMDD_HHmmSS_PPPRRR_UTMZZZwhere:
    YYYYMMDD – date of granule data acquisition: year, month, day    HHmmSS – granule center time (UTC): hour, minutes, seconds    PPPRRR – WRS path and row    ZZZ – UTM zone Figure 1. Granules of the Landsat 8 path number 193, which cover the Baltic Sea area. Numbers identify row of the path.
DOI: 10.25387/g3.14489004.v1
title: Supplemental Material for Iwanicki et al., 2021

description: <b>Additional file 1. </b>R script used to generate the phylogenetic tree. ; <b>Additional file 2. </b>Table S1.<b> </b>Main assembly summary assessed with QUAST tool in four de novo assemblers used to reconstruct the genome of <i>Metarhizium humberi</i> ESALQ1638.Table S2. The Geographical origin and host/substrate from each <i>Metarhizium </i>strain; <b>Additional file 3. </b>Table S2. List of repetitive elements in the genome of <i>Metarhizium humberi</i> ESALQ1638; <b>Additional file 4. </b>Table S3. List of repetitive elements in <i>Metarhizium</i> genomes; <b>Additional file 5. </b>Table S4. InterPro categories related to transcription factors; <b>Additional file 6. </b>Table S5. InterProScan analysis and comparison of <i>Metarhizium humberi</i> ESALQ1638 with other 10 <i>Metarhizium</i> genomes and outgroups. ; <b>Additional file 7. </b>Figure S1. Pipeline for analysis of <i>M. humberi </i>ESALQ1638. ; <b>Additional file 8. </b>tRNAscan analyses. ; <b>Additional file 9.</b> Orthologous genes 1.; <b>Additional file 10. </b>Orthologous genes 2. ; <b>Additional file 11.</b> InterPro category.; <b>Additional file 12.</b> Unique proteins <i>Metarhizium humberi</i> ESALQ1638.; <b>Additional file 13.</b> Enriched molecular function in <i>Metarhizium humberi</i> ESALQ1638 without orthologs in another genome sequenced of <i>Metarhizium</i>.; <b>Additional file 14.</b> Figure S1. Pipeline for analysis of <i>Metarhizium humberi</i> ESALQ1638 secretome. <b>Additional file 15. </b>Secretome.; <b>Additional file 16.</b> Pathogen-host interaction (PHI) dataset.
DOI: 10.25387/g3.14489004
title: Supplemental Material for Iwanicki et al., 2021

description: <b>Additional file 1. </b>R script used to generate the phylogenetic tree. ; <b>Additional file 2. </b>Table S1.<b> </b>Main assembly summary assessed with QUAST tool in four de novo assemblers used to reconstruct the genome of <i>Metarhizium humberi</i> ESALQ1638.Table S2. The Geographical origin and host/substrate from each <i>Metarhizium </i>strain; <b>Additional file 3. </b>Table S2. List of repetitive elements in the genome of <i>Metarhizium humberi</i> ESALQ1638; <b>Additional file 4. </b>Table S3. List of repetitive elements in <i>Metarhizium</i> genomes; <b>Additional file 5. </b>Table S4. InterPro categories related to transcription factors; <b>Additional file 6. </b>Table S5. InterProScan analysis and comparison of <i>Metarhizium humberi</i> ESALQ1638 with other 10 <i>Metarhizium</i> genomes and outgroups. ; <b>Additional file 7. </b>Figure S1. Pipeline for analysis of <i>M. humberi </i>ESALQ1638. ; <b>Additional file 8. </b>tRNAscan analyses. ; <b>Additional file 9.</b> Orthologous genes 1.; <b>Additional file 10. </b>Orthologous genes 2. ; <b>Additional file 11.</b> InterPro category.; <b>Additional file 12.</b> Unique proteins <i>Metarhizium humberi</i> ESALQ1638.; <b>Additional file 13.</b> Enriched molecular function in <i>Metarhizium humberi</i> ESALQ1638 without orthologs in another genome sequenced of <i>Metarhizium</i>.; <b>Additional file 14.</b> Figure S1. Pipeline for analysis of <i>Metarhizium humberi</i> ESALQ1638 secretome. <b>Additional file 15. </b>Secretome.; <b>Additional file 16.</b> Pathogen-host interaction (PHI) dataset.
DOI: 10.34740/kaggle/dsv/2875013
title: Gasoline Prices in Italy - 20211201
DOI: 10.7294/17020022
title: Campylobacter in aquatic and terrestrial mammals is driven by life history traits: A systematic review and meta-analysis

description: These are the datasets used for our statistical analyses, synthesized from the primary literature. Included are the spreadsheets used to create our graphs, conduct chi-squared tests for association between variables, and examine metadata about the studies.
DOI: 10.5281/zenodo.5422339
title: Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control - associated datasets

description: These datasets include raw data output and associated files from ScanFold and CMbuilder analyses of human cancer driver gene mRNA. ScanFold was used to predict RNA regions of unusual thermodynamic stability, and CMbuilder was used to evaluate covariation of the predicted structures in those regions. Please view the file <em>README_general_description_Zenodo_files.txt</em> for brief descriptions of the content. These data are associated with the manuscript entitled <em>Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control</em>. The manuscript has currently been submitted for review in PLOS ONE.
description: Thank you to NIH-NIGMS R01GM133810 for funding.
DOI: 10.34808/tkt8-m428
title: Bibliographic data on datasets affiliated to Most Wiedzy and indexed in Data Citation Index (retrieved  by Web of Science service in December 2021)

description: The file contains the number of datasetes published by the reserchers affiliated to Most Wiedzy and indexed in Data Citation Index provided by Web of Science. The Search was performed using the name of institution in the  'address' filed or 'group author' filed . Data retrieved and published during the '5th Open Science Conference (1-3.12.2021).
DOI: 10.6073/pasta/5adc884142cee1c856dfacd32858a3ab
title: Foundation Species in Forest Dynamics Plots of China 2004-2014

description: Foundation species structure forest communities and ecosystems but are difficult to identify without long-term observations or experiments. We used statistical criteria---outliers from size-frequency distributions and scale-dependent negative effects on alpha diversity and positive effects on beta diversity---to identify candidate foundation woody plant species in 12 large forest-dynamics plots spanning 26 degrees of latitude in China. We used these data to: [1] identify candidate foundation species in Chinese forests; [2] test the hypothesis---based on observations of a mid-latitude peak in functional trait diversity and high local species richness but few numerically dominant species in tropical forests---that foundation woody plant species are more frequent in temperate than tropical or boreal forests; and [3] compare these results with data from the Americas to suggest candidate foundation genera in Northern Hemisphere forests. Using the most stringent criteria, only two species of Acer, the canopy tree Acer ukurunduense and the shrubby treelet Acer barbinerve, were identified in temperate plots as candidate foundation species. Using more relaxed criteria, we identified four times more candidate foundation species in temperate plots (including species of Acer, Pinus, Juglans, Padus, Tilia, Fraxinus, Prunus, Taxus, Ulmus, and Corlyus) than in (sub)tropical plots (the shrubs or treelets Aporosa yunnanensis, Ficus hispida, Brassaiopsis glomerulata, and Orophea laui). Species diversity of co-occurring woody species was negatively associated with basal area of candidate foundation species more frequently at 5- and 10-m spatial grains (scale) than at a 20-m grain. Conversely, Bray-Curtis dissimilarity was positively associated with basal area of candidate foundation species more frequently at 5-m than at 10- or 20-m grains. Using either stringent or relaxed criteria supported the hypothesis that foundation species are more common in mid-latitude temperate forests. Comparisons of candidate foundation species in Chinese and North American forests suggest that Acer be investigated further as a foundation tree genus.
DOI: 10.5281/zenodo.5747803
title: Random Sample of Open Source Ventilators

description: This is a random sample of references to open source ventilators based on the data published by the PubInv project (https://github.com/PubInv/covid19-vent-list CC0-1.0). It was used to verify technology and documentation readiness scales introduced in a CIRP design conference paper. This upload shall make the data set used for the conference paper publicly accessible.