cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23998014.v1
title: Supplementary Material for: AKAP12 and IGFBP4 are prognostic factors for chronic lymphocytic leukemia

description: Introduction: To develop a prognostic model for chronic lymphocytic leukemia (CLL). Methods: GEO2R was used to retrieve the gene expression data of CLL and normal B cells from the Gene Expression Omnibus (GEO, GSE22529 and GSE50006 datasets) database. Perl (Practical Extraction and Report Language) was used to extract the gene expression and overall survival (OS) data of CLL patients from the CLLE-ES project in the ICGC (International Cancer Genome Consortium) database. Cox regression with Lasso was used to create and validate a prognostic model for CLL. Results: A total of 267 genes exhibited differential expression between CLL and normal B cells. Uni-Cox analysis identified 14 DEGs that correlated with overall survival (OS). Lasso multivariate evaluation demonstrated that AKAP12 and IGFBP4 are independent prognostic factors for CLL. Kaplan-Meier survival analysis revealed a significant association between the estimated risk score and survival. The area under the receiver operating characteristics (ROC) curve (AUC) was calculated to be 0.97, indicating high predictive accuracy. In addition, high AKAP12 and IGFBP4 risk score was associated with the high incidence of trisomy 12q. Conclusion: Taken together, AKAP12 and IGFBP4 are independent prognostic factors for CLL.
DOI: 10.17876/plate/dr.3/envelopes/109_87884
title: Digital object identifier (DOI) for the envelope 87884 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87885
title: Digital object identifier (DOI) for the envelope 87885 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87886
title: Digital object identifier (DOI) for the envelope 87886 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87887
title: Digital object identifier (DOI) for the envelope 87887 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87888
title: Digital object identifier (DOI) for the envelope 87888 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87889
title: Digital object identifier (DOI) for the envelope 87889 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87890
title: Digital object identifier (DOI) for the envelope 87890 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87891
title: Digital object identifier (DOI) for the envelope 87891 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87892
title: Digital object identifier (DOI) for the envelope 87892 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87893
title: Digital object identifier (DOI) for the envelope 87893 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87894
title: Digital object identifier (DOI) for the envelope 87894 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87895
title: Digital object identifier (DOI) for the envelope 87895 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87896
title: Digital object identifier (DOI) for the envelope 87896 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87897
title: Digital object identifier (DOI) for the envelope 87897 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87898
title: Digital object identifier (DOI) for the envelope 87898 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87899
title: Digital object identifier (DOI) for the envelope 87899 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87900
title: Digital object identifier (DOI) for the envelope 87900 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87901
title: Digital object identifier (DOI) for the envelope 87901 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87902
title: Digital object identifier (DOI) for the envelope 87902 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87903
title: Digital object identifier (DOI) for the envelope 87903 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87904
title: Digital object identifier (DOI) for the envelope 87904 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87905
title: Digital object identifier (DOI) for the envelope 87905 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87906
title: Digital object identifier (DOI) for the envelope 87906 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87907
title: Digital object identifier (DOI) for the envelope 87907 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87908
title: Digital object identifier (DOI) for the envelope 87908 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87909
title: Digital object identifier (DOI) for the envelope 87909 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87910
title: Digital object identifier (DOI) for the envelope 87910 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87911
title: Digital object identifier (DOI) for the envelope 87911 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87912
title: Digital object identifier (DOI) for the envelope 87912 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87913
title: Digital object identifier (DOI) for the envelope 87913 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87914
title: Digital object identifier (DOI) for the envelope 87914 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87915
title: Digital object identifier (DOI) for the envelope 87915 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87916
title: Digital object identifier (DOI) for the envelope 87916 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87917
title: Digital object identifier (DOI) for the envelope 87917 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87918
title: Digital object identifier (DOI) for the envelope 87918 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87919
title: Digital object identifier (DOI) for the envelope 87919 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87920
title: Digital object identifier (DOI) for the envelope 87920 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87921
title: Digital object identifier (DOI) for the envelope 87921 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87922
title: Digital object identifier (DOI) for the envelope 87922 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87923
title: Digital object identifier (DOI) for the envelope 87923 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87924
title: Digital object identifier (DOI) for the envelope 87924 in archive 109 from the APPLAUSE DR3
DOI: 10.6084/m9.figshare.23998020
title: Supplementary Material for: AKAP12 and IGFBP4 are prognostic factors for chronic lymphocytic leukemia

description: Introduction: To develop a prognostic model for chronic lymphocytic leukemia (CLL). Methods: GEO2R was used to retrieve the gene expression data of CLL and normal B cells from the Gene Expression Omnibus (GEO, GSE22529 and GSE50006 datasets) database. Perl (Practical Extraction and Report Language) was used to extract the gene expression and overall survival (OS) data of CLL patients from the CLLE-ES project in the ICGC (International Cancer Genome Consortium) database. Cox regression with Lasso was used to create and validate a prognostic model for CLL. Results: A total of 267 genes exhibited differential expression between CLL and normal B cells. Uni-Cox analysis identified 14 DEGs that correlated with overall survival (OS). Lasso multivariate evaluation demonstrated that AKAP12 and IGFBP4 are independent prognostic factors for CLL. Kaplan-Meier survival analysis revealed a significant association between the estimated risk score and survival. The area under the receiver operating characteristics (ROC) curve (AUC) was calculated to be 0.97, indicating high predictive accuracy. In addition, high AKAP12 and IGFBP4 risk score was associated with the high incidence of trisomy 12q. Conclusion: Taken together, AKAP12 and IGFBP4 are independent prognostic factors for CLL.
DOI: 10.6084/m9.figshare.23998020.v1
title: Supplementary Material for: AKAP12 and IGFBP4 are prognostic factors for chronic lymphocytic leukemia

description: Introduction: To develop a prognostic model for chronic lymphocytic leukemia (CLL). Methods: GEO2R was used to retrieve the gene expression data of CLL and normal B cells from the Gene Expression Omnibus (GEO, GSE22529 and GSE50006 datasets) database. Perl (Practical Extraction and Report Language) was used to extract the gene expression and overall survival (OS) data of CLL patients from the CLLE-ES project in the ICGC (International Cancer Genome Consortium) database. Cox regression with Lasso was used to create and validate a prognostic model for CLL. Results: A total of 267 genes exhibited differential expression between CLL and normal B cells. Uni-Cox analysis identified 14 DEGs that correlated with overall survival (OS). Lasso multivariate evaluation demonstrated that AKAP12 and IGFBP4 are independent prognostic factors for CLL. Kaplan-Meier survival analysis revealed a significant association between the estimated risk score and survival. The area under the receiver operating characteristics (ROC) curve (AUC) was calculated to be 0.97, indicating high predictive accuracy. In addition, high AKAP12 and IGFBP4 risk score was associated with the high incidence of trisomy 12q. Conclusion: Taken together, AKAP12 and IGFBP4 are independent prognostic factors for CLL.
DOI: 10.17876/plate/dr.3/envelopes/109_87925
title: Digital object identifier (DOI) for the envelope 87925 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87926
title: Digital object identifier (DOI) for the envelope 87926 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87927
title: Digital object identifier (DOI) for the envelope 87927 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87928
title: Digital object identifier (DOI) for the envelope 87928 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87929
title: Digital object identifier (DOI) for the envelope 87929 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87930
title: Digital object identifier (DOI) for the envelope 87930 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87931
title: Digital object identifier (DOI) for the envelope 87931 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87932
title: Digital object identifier (DOI) for the envelope 87932 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87933
title: Digital object identifier (DOI) for the envelope 87933 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87934
title: Digital object identifier (DOI) for the envelope 87934 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87935
title: Digital object identifier (DOI) for the envelope 87935 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87936
title: Digital object identifier (DOI) for the envelope 87936 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87937
title: Digital object identifier (DOI) for the envelope 87937 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87938
title: Digital object identifier (DOI) for the envelope 87938 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87939
title: Digital object identifier (DOI) for the envelope 87939 in archive 109 from the APPLAUSE DR3
DOI: 10.15138/39hr-9n34
title: NOAA Global Greenhouse Gas Reference Network Flask-Air PFP Sample Measurements of CO<sub>2</sub>, CH<sub>4</sub>, CO, N<sub>2</sub>O, H<sub>2</sub>, SF<sub>6</sub> and isotopic ratios collected from aircraft vertical profiles
DOI: 10.17876/plate/dr.3/envelopes/109_87940
title: Digital object identifier (DOI) for the envelope 87940 in archive 109 from the APPLAUSE DR3
DOI: 10.25810/2wf1-f075
title: Jang Bogo Dynasonde data on vertical speed for March-September 2015

description: Vertical Incidence Pulsed Ionospheric Radar (VIPIR) equipped with the Dynasonde analysis software was installed at the Antarctic Jang Bogo Station (JBS, 74.62 S, 164.23 E geographic coordinates and 79.87 S geomagnetic latitude) in 2015. This specific dataset that was selected for the study of long-period wave activity in the ocean - Ross Ice Shelf (RIS) - atmosphere system is 5.5-month long, between March 2015 and September 2015. During this time interval periodicity of the sounding sessions was one every 5 minutes. The dataset has been chosen because it overlaps with both seismometric array operation on the RIS and hydrophone deployment on the Ross Sea seafloor periods. The ionospheric sounding system at JBS utilizes the Dynasonde mode of operation and the Dynasonde analysis software to conduct echo recognitions and ionogram inversions to produce ionospheric parameters such as bottom-side ionospheric electron density profiles with error bars, the F-region peak density (NmF2) and the peak height (hmF2), estimates for the ion drifts, and ionospheric tilts. It is also very efficient in detection and characterization of ionospheric wave activity.

This collection of files contains only data on vertical speed V of ionospheric plasma produced by the Dynasonde software. Format of the file name is

JB57N_<start date and time UT>_<end date and time UT>_<altitude in km>_V.txt

Each file contains data for a single altitude. Format of every record in the file is

<date and time UT><vertical speed value>

with vertical speed values represented in floating point format with 3 decimal units.
DOI: 10.26300/zqvn-fh24
title: Codes for Numerical Thermal Pressurization
DOI: 10.5281/zenodo.7593184
title: Matrix Approach to Accelerate Spin-Up of CLM5

description: The spin-up problem hinders our ability to study some key issues in land carbon cycle modeling, such as sensitivity analysis. This work applies a new semi-analytical spin-up (SASU) framework to accelerate spin-up of Community Land Model matrix version 5. We evaluate the computational efficiency and steady-state consistency of ND, AD and SASU approaches using CLM5 at both one-site (Brazil) and the global scale. In addition, we test SASU in Parameter Perturbation Experiment (PPE) in CLM5.
DOI: 10.5281/zenodo.8043397
title: Data set for the article 'Gold-FISH enables targeted NanoSIMS analysis of plant-associated bacteria'

description: This dataset contains data that support the manuscript Schmidt et al () "Gold-FISH enables targeted NanoSIMS analysis of plant-associated bacteria<em>", </em>The New Phytologist, accepted on 14.06.2023. It contains the following data: NanoSIMS imaging data, which was used for Fig. 2-3, as well as for Fig. S1-4. Data are provided as the original NanoSIMS images (.im) as well as their associated checkfiles (.chk_im).
DOI: 10.58032/agh/li6d1k
title: Supplementary data: geochronological results, quartz in garnet measurements and Zr in rutile measurements for blueschist and eclogite from the Vestgötabreen Complex, Svalbard.

description: The dataset includes: Table S1. Sensitive high-resolution ion microprobe reverse-geometry (SHRIMP-RG) zircon U-Pb data. Table S2. Sensitive high-resolution ion microprobe reverse-geometry (SHRIMP-RG) zircon trace element data. Table S3. Sensitive high-resolution ion microprobe reverse-geometry (SHRIMP-RG) monazite U-Pb data. Table S4. Sensitive high-resolution ion microprobe reverse-geometry (SHRIMP-RG) monazite and allanite trace element data. Table S5. Sensitive high-resolution ion microprobe reverse-geometry (SHRIMP-RG) allanite U-Pb data. Table S6. Quartz-in-garnet data Table S7. Zr-in-Rutile data
DOI: 10.14458/rsu.res.2016.157
title: การพัฒนาหลักสูตรฝึกอบรมทักษะวิชาชีพ โดยใช้กระบวนการเรียนรู้แบบมีส่วนร่วม
DOI: 10.17045/sthlmuni.22193683
title: Data to "Grassland species colonization of a restored grassland on a former forest varies in short-term success but is facilitated by greater functional connectivity" by Kapás et al. 2023

description: This dataset includes vascular plant species lists with abundance values from two time period ( t1 and t2) collected in 275 plots (PlotID) with related environmental variables (meta_data with coordinates and presence/absence of livestock) in a former forest, which has been restored back to a semi-natural grassland. The data is collected on 50 x 50 cm level in a 4.2 ha area in Södermanland, Sweden. Empty values in the plant species lists read as NA´s. <br> <br> "Grassland species colonization of a restored grassland on a former forest varies in short-term success but is facilitated by greater functional connectivity" published in Nordic Journal of Botany DOI: 10.1111/njb.03762 <br> <br> <br> <br>
DOI: 10.17632/76x6zp4j46.1
title: Dog brains are sensitive to infant- and dog-directed prosody, Commun. Biol. 2023

description: Raw data related to manuscipt entitled "Dog brains are sensitive to infant- and dog-directed prosody" submitted to Communications Biology, 2023
DOI: 10.17876/plate/dr.3/envelopes/109_87941
title: Digital object identifier (DOI) for the envelope 87941 in archive 109 from the APPLAUSE DR3
DOI: 10.25392/leicester.data.22700146
title: EDAC data with SEP detections

description: This dataset contains housekeeping data Error Detection and Correction (EDAC) memory counters from 7 different missions of the European Space Agency with clear detections of Solar Energetic Particles. The missions are Venus Express, Mars Express, ExoMars-Trace Gas Orbiter, Rosetta, BepiColombo, Solar Orbiter and Gaia. <br> EDACs are pieces of code that protect memories in a spacecraft computer from bit-flips caused by single event upsets. <br> Data shown here are part of the paper entilted: "Solar energetic particle events detected in the housekeeping data of the European Space Agency’s spacecraft flotilla in the Solar System" in the journal <em>Space Weather.</em> <br> If this dataset is used, please contact: Dr Beatriz Sanchez-Cano, bscmdr1@leicester.ac.uk <br>
DOI: 10.5066/p9zr7bwl
title: Dataset from the Upper Mississippi River Restoration Program (1993-2019) to reconstruct missing data by comparing interpolation techniques

description: The dataset accompanies the scientific article, "Reconstructing missing data by comparing interpolation techniques: applications for long-term water quality data." Missingness is typical in large datasets, but intercomparisons of interpolation methods can alleviate data gaps and common problems associated with missing data. We compared seven popular interpolation methods for predicting missing values in a long-term water quality data set from the upper Mississippi River, USA.
DOI: 10.5067/srb/rel3.0_sw_monthly_utc_nc_l3
title: SRB Level 3 REL3.0 SW MONTHLY UTC NC NetCDF file
DOI: 10.5067/srb/rel3.1_lw_monthly_nc_l2
title: SRB Level 2 REL3.1 LW MONTHLY NC NetCDF file
DOI: 10.5281/zenodo.6963255
title: Field margins and cropping system influence natural enemies of bean aphids

description: The data presents beneficial effects of field margin vegetation on natural enemies with reduced aphid infestation in lablab field plots and higher grain yield. The data further shows that cropping system have some influence on natural enemy diversity and abundance.
DOI: 10.5281/zenodo.7607098
title: AFRP22 Tomographic Model & MTZ Receiver Functions: Data, Software, Plotting

description: AFRP22 (Boyce et al., 2023), is an adaptively parameterized, absolute P-wave tomographic model for Africa provided with and without crustal correction. Also provided is mantle transition zone Receiver Functions for new stations in the Turkana Depression (data embargo lifted 2024-05-24). Citation: Boyce, A., Kounoudis, R., Bastow, I. D., Cottaar, S., Ebinger, C. J., Ogden, C. S. Mantle Wavespeed and Discontinuity Structure below East Africa: Implications for Cenozoic Hotspot Tectonism and the Development of the Turkana Depression (under revision) Geochemistry, Geophysics, Geosystems. This repository accompanies the publication of the tomographic model on the IRIS-EMC that can be found here: https://ds.iris.edu/ds/products/emc-afrp22/ or with the following doi: https://doi.org/10.17611/dp/emc.2023.afrp22.1. Please find AFRP22 and its related files for a detailed description of the distributed model. The AFRP22_RFs_SHARE.tar repository contains: Plotting: Codes and necessary files to reproduce figures in main manuscript. tomography Tomography_AFRP22: Implementation of MIT inversion algorithm used to produce AFRP22 including formatted data. Raw_data: Hand-picked and processed seismic data (.SAC) from new African seismic networks. Original_documentation: Documentation for original distribution of inversion code from MIT global seismology group receiver_functions Processing codes (SMURFPy) already available at doi: 10.5281/zenodo.4337257 Raw_data - Data files for P, PP and PKP RFs, CCP stacked volumes produced by SMURFPy code and picked discontinuity files The following authors contributed to this work: A. Boyce: University of Cambridge, Department of Earth Science, Bullard Laboratories, Madingley Road, Cambridge, UK.<br> R. Kounoudis: Department of Earth Science and Engineering, Royal School of Mines, Prince Consort Road, Imperial College London, London, UK.<br> I. D. Bastow: Department of Earth Science and Engineering, Royal School of Mines, Prince Consort Road, Imperial College London, London, UK.<br> S. Cottaar: University of Cambridge, Department of Earth Science, Bullard Laboratories, Madingley Road, Cambridge, UK.<br> C. J. Ebinger: Department of Earth and Environmental Sciences, Tulane University, New Orleans, LA 70118, USA.<br> C. S. Ogden: School of Geography and Geology, University of Leicester, Leicester, LE1 7RH, UK.<br>
DOI: 10.17876/plate/dr.3/envelopes/109_87942
title: Digital object identifier (DOI) for the envelope 87942 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87943
title: Digital object identifier (DOI) for the envelope 87943 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87944
title: Digital object identifier (DOI) for the envelope 87944 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87945
title: Digital object identifier (DOI) for the envelope 87945 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87946
title: Digital object identifier (DOI) for the envelope 87946 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87947
title: Digital object identifier (DOI) for the envelope 87947 in archive 109 from the APPLAUSE DR3
DOI: 10.17876/plate/dr.3/envelopes/109_87948
title: Digital object identifier (DOI) for the envelope 87948 in archive 109 from the APPLAUSE DR3