cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/f9ghrnzghx.1
title: Supermatrix analyses reveal insights into the importance of outgroup, gene and taxon sampling in Onosma (Lithospermeae) phylogenetics

description: The dataset is related to Aygoren Uluer, 2023 (In press)

Journal Name: Anales del Jardín Botánico de Madrid

Title: Supermatrix analyses reveal insights into the importance of outgroup, gene and taxon sampling in Onosma (Lithospermeae) phylogenetics

Abstract. Tribe Lithospermeae Dumort (Boraginaceae) consists of ca. 26 genera and 470 species, in which Onosma L. constitutes approximately one third of the species (∼150 species). While the tribe has been strongly supported as monophyletic, within the tribe both generic and species boundaries are ambiguous. Among them, to date, not only the phylogenetic position of Eastern Asian Onosma species, but also the taxonomic limits of the genus remains unclear. Whether Eastern Asian Onosma is monophyletic, or the genus should be widened including Maharanga DC. and maybe Cystostemon are still open questions. For these reasons, I performed 16 phylogenetic analyses with different taxon coverage, alignments, gene regions and outgroups, with up to 746 taxa of tribe Lithospermeae and with five DNA regions, downloaded from GenBank. The results of the present study, with the widest taxon coverage to date, have shown that while genus Onosma was not monophyletic in any of the analyses, the phylogenetic relationships among Onosma s.s., Eastern Asian Onosma, Maharanga and Cystostemon Balf.f. changes from one analysis to another. However, the results of approximately unbiased (AU) test showed that the (((Eastern Asian Onosma+Maharanga) Cystostemon) Onosma s.s.) topology is overwhelmingly supported. Therefore, the current study highlights the importance of taxon, gene and outgroup sampling in Onosma phylogenetics.

Keywords. Boraginaceae, Onosma, outgroup, phylogeny, taxon/gene sampling.

Appendix 1. Alignment of ITS (746 taxa)
Appendix 2. Alignment of total evidence analysis with 350 taxa
Appendix 3. ITS (323 taxa)- RAxML result
Appendix 4. ITS (555 taxa)- RAxML result
Appendix 5. ITS (746 taxa)- RAxML result
Appendix 6. Plastid (339 taxa)- RAxML result
Appendix 7. Total evidence (350 taxa)- RAxML result
Appendix 8. Total evidence (345 taxa)- RAxML result
Appendix 9. Total evidence with distant outgroup (347 taxa)- RAxML result
Appendix 10. Total evidence with closely related outgroup (347 taxa)-RAxML result
DOI: 10.17632/mk279psk2z.1
title: The strain-strain curve of the granite under cyclic compression

description: This data contains the strain-strain curves of the granite under cyclic compression. The mineral composition of the granite is 40% for K-feldspar, 25% for quartz, 30% for plagioclase, and 5% for biotite. It has a grain size that mainly ranges from 1 mm to 8 mm.
DOI: 10.17632/kn3s68t6r4.1
title: To compare the effect of Pelvic PNF with core strengthening on trunk control, balance and gait in patients with paraplegia

description: Individuals suffering from paraplegia have poor trunk and pelvic control which may affect the functional performance and vocational tasks. The interventions on trunk and pelvic control for spinal cord injury individuals was neglected since long. treatment options should be formulated and established to increase trunk and pelvic control for improving gait and balance of the individuals without any side effects. It has been proved as an effective treatment option in improving trunk control, balance and gait among stroke population. This is the first known literature focusing on physiotherapeutic interventions on trunk and pelvic control among spinal cord injury patients. Hence, with this study, it will be used in spinal cord injury (SCI) population as well as it is both cost and time effective.
DOI: 10.17632/tnbzyd68sz.1
title: Modeling of Diurnal Temperatures 

description: Two Excel files supporting diurnal temperature analysis.
DOI: 10.17632/v5bdjc84gp.1
title: Peer Support Improves Infant Nutrition And Growth Among Refugees Mothers In The West- Nile Region, Uganda

description: The study aimed 1)  To determine the effects of a peer-led integrated nutrition education intervention on maternal social support among refugees in Uganda. 2) To analyze the relationship of the intervention using the Care Group model on IYCF practices of infants 3) To investigate the effects of a peer-led integrated nutrition education intervention using the Care Group model on infant growth among refugees in Uganda. A community-based cluster randomized controlled trial was conducted among refugee post-emergency settlements in the West Nile region in Uganda. The Adjumani district was randomly selected from among the 10 districts hosting refugees in the region. Four of 19 settlements in the Adjumani district were randomly selected and assigned to three arms of the study. Each study arm had a total of ten peer groups. Ayilo-I settlement was assigned as a Mothers-only study arm, Pagirinya and Ayilo II settlements were the Parents-combined (both Mothers and Fathers) study arm while Nyumanzi settlement was the Control arm. These settlements were at least 6 kilometers apart to reduce the possibility of spillover effects of the intervention. The intervention was conducted in the Mothers-only and Parents-combined arms. The village health team (VHT) members and health center midwife assistants supported the identification of pregnant women in their third trimester to be included in the study. 
Sample size
The introduction of complementary foods as recommended by WHO and UNICEF was used as the primary outcome because of its reliability as an indicator of child feeding practices. The desired sample size of 317 pregnant women was calculated using GPower 3.1 software, a type I error of 0.05, a power of 0.90, and an effect size of 0.2 (14, 17) to detect differences in the proportions of infants introduced to complementary foods at 6-8 months among the 3 study arms. A 23 percent loss during follow-up was estimated; thus, 390 women (15-49 years of age) in their third trimester of pregnancy comprised the study sample and were enrolled at baseline. Husbands were eligible to participate with their wives in the Parents-combined treatment arm. Eighty-two percent (n=321) of the mother-infant dyads completed the study. The mother-infant dyads comprised the experimental unit for assessing the practices of complementary feeding of infants while infant growth was measured as an average of three indicator measures. By the end of the study, the mother-infant dyads were 119 for the Mothers-only study arm, 111 for the  Parents-combined arm, and 91 for the Control arm. Baseline data was collected before the start of the intervention. Midline I, II, and Endline data was collected over the year-long study. At the end of the study, infant complementary feeding improved significantly in both Mothers-only and Parents-combined arms when compared to the Control. Also, The intervention delivered through Care Groups significantly improved infant stunting and underweight but not wasting
DOI: 10.17632/z3hvg9wtvg.1
title: Chaperone-Facilitated Aggregation of Thermo-Sensitive Proteins Shields Them from Degradation during Heat Stress

description: Manuscript dataset
DOI: 10.17632/z3hvg9wtvg.2
title: Chaperone-Facilitated Aggregation of Thermo-Sensitive Proteins Shields Them from Degradation during Heat Stress

description: Dataset of the article "Chaperone-Facilitated Aggregation of Thermo-Sensitive Proteins Shields Them from Degradation during Heat Stress" published in Cell Reports, Vol. 30,  Issue 7, p2430–2443.e4, 2020.
DOI: 10.17632/jtzcv2m4rm.1
title: data on financial inclusion and health outcomes

description: This are the dataset use for the paper on financial inclusion and health outcomes
DOI: 10.17632/23p4t653z3.1
title: Sleep Disorders, School Jet Lag and Anxiety associated with Traumatic Dental Injury in students eight to ten years of age

description: These data were part of a larger study that evaluated biopsychosocial factors associated with the oral health of children aged 8 to 10 years in a city in the interior of northeastern Brazil
DOI: 10.17632/csg67znstr.1
title: Gabal Oman

description: Fission Track data for the North Eastern Desert, Egypt
DOI: 10.17632/92g8n7pjp2.1
title: Electricity Energy Consumption in the Gran Buenos Aires (metropolitan area) from 2012 to 2018 --- CAMMESA data 

description: The Electricity Energy Consumption in the Gran Buenos Aires (EECGBA) dataset contains nine variables reported hourly from the beginning of January 1st, 2012, until 11 pm on December 31st, 2018 (61,368 rows). The data was collected by the Compañía Administradora del Mercado Mayorista Eléctrico Sociedad Anónima (CAMMESA). The data was generously offered to researchers at Universidad Nacional del Sur (UNS) (Argentina) to be used in research projects involving UNS and Dalhousie University (Canada). 

The dataset describes weather data (temperature, humidity, and so on) and electricity consumption (in MWh) for the Gran Buenos Aires (GBA) (Buenos Aires city metropolitan area) geographical area. Additionally, we also included in the dataset two variables related to the economic activity status of that day. First, we included the Argentinian monthly estimator of economic activity (EMAE in Spanish) produced by the INDEC (National Institute of Statistics and Census of Argentina). Second, we also included a boolean variable that indicates if that day was a holiday in Argentina (which means a large part of the population didn't work that day).

In summary, the dataset includes ten columns. The first column is the date and time of each data entry (format YYYY-MM-DD HH:MM:SS), and the following nine columns describe the following information:
- The first variable, DemGBA, describes the electrical consumption of the GBA measured in megawatt hours (MWh).
- The second variable, Temp, measures the hourly ambient temperature in GBA in degrees Celsius.
- The third variable, Holiday, is a boolean variable that indicates if on that day there was a holiday in Argentina (meaning it was a non-workable day). 
- The fourth variable, EMAE, is the Argentinian monthly estimator of economic activity produced by the INDEC.
- The fifth variable, vy, is the south-north wind component in km/h.
- The sixth variable, vx, is the west-est wind component in km/h.
- The seventh variable, GHI, is the Global Horizontal Irradiance (the total solar radiation incident on a horizontal surface) measured in watts per square meter (W/m2).
- The eighth variable, Hum, describes the ambient relative humidity measured as a percentage.
- The ninth variable, Pres, measures the atmospheric pressure in hectopascals (hPa).

All variables present an hourly frequency (updated every hour) except "Holiday," which changes daily, and the EMAE, which changes monthly. 

How to read the data in python:
import pandas as pd
df = pd.read_csv('cammesa_db_2012_2018.csv',index_col=0)

Acknowledgments:
We greatly thank the Compañía Administradora del Mercado Mayorista Eléctrico Sociedad Anónima (CAMMESA) for providing the data.
DOI: 10.17632/tn4dx739ks.1
title: Understanding the outcomes of associational involvement in football fan clubs

description: Monological data set
DOI: 10.17632/wjg957xtn7.1
title: Short pAgos Jun-Tao Zhang

description: NADase assay
DOI: 10.25345/c58c9rd8j
title: MassIVE MSV000091518 - Mar21 chilies data no Feature detection
title: Initial attempts at MN of DDMS2 data associated with chili peppers. This trial does not include feature detection.
DOI: 10.5281/zenodo.7756862
title: Base de datos de Uso de Petiveria alliacea Linn como tratamiento paliativo del dolor pulpar

description: Base de datos que recopila las variables analizadas en Uso de Petiveria alliacea Linn como tratamiento paliativo del dolor pulpar: edad, tiempo de refracción del dolor y efecto terapéutico.
DOI: 10.5281/zenodo.7756861
title: Base de datos de Uso de Petiveria alliacea Linn como tratamiento paliativo del dolor pulpar

description: Base de datos que recopila las variables analizadas en Uso de Petiveria alliacea Linn como tratamiento paliativo del dolor pulpar: edad, tiempo de refracción del dolor y efecto terapéutico.
DOI: 10.25430/datarepository-statisticalsciences_27
title: Electus

description: The study is based on a survey carried out on 250 entrepreneurs of manufacturing companies and of industrial services of the Veneto region, Italy. The  entrepreneurs expressed their preferences in relation to the hypothetical profiles of candidates for five job position in the administrative, human resources, marketing, information system and commercial offices of firms. For each position, the entrepreneurs were asked to choose among four profiles of possible candidates qualified by six attributes. A study of the perspectives of entrepreneurs who are selecting candidates for job vacancies and of the possibly inadequate competencies of graduates who apply for these vacancies may help bridge the gap between higher education and labour. This research was aimed at examining these aspects by surveying entrepreneurs through a "conjoint" measurement approach, which is a data collection method based on the choice of one or more multifaceted alternatives within a given scenario.
DOI: 10.5281/zenodo.7067733
title: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"

description: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"
DOI: 10.5281/zenodo.7743031
title: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"

description: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"
DOI: 10.5281/zenodo.7067732
title: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"

description: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"
DOI: 10.5281/zenodo.7756889
title: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"

description: Code for paper named "Effects of fluid pressure development on hydrothermal mineralization via cellular automaton simulation"
DOI: 10.48432/iuatsj
title: LiDAR survey on 1007 hectares in Nova Ubiratã II, Mato Grosso, Brasil in 2018.

description: The LiDAR data Nova Ubiratã municipality - II (FNE_A01_2018_LiDAR) refers to the survey carried out in Nova Ubiratã municipality, Mato Grosso state, Brazil. The data were collected under the project Sustainable Landscapes, a project supported by the United States Agency for International Development (USAID) and US Department of State. The United States Forest Service working in collaboration with the Brazilian Agricultural Research Corporation (Embrapa) have made possible the provision of high accuracy LiDAR data aiming at developing new methods and generating knowledge in the field This dataset contains: a. Classified LAS formatted point cloud data (vendor delivered); b. Digital Terrain Model (vendor delivered); c. Map of LiDAR coverage area and block boundaries; “Data were acquired by the Sustainable Landscapes Brazil project supported by the Brazilian Agricultural Research Corporation (Embrapa), the US Forest Service, USAID and the US Department of State."
DOI: 10.48432/cn6hng
title: LiDAR survey on 995 hectares in Feliz Natal and União do Sul, Mato Grosso, Brasil in 2018

description: The LiDAR data Feliz Natal (FN2_A01_2018_LiDAR) refers to the survey carried out in Feliz Natal municipality, Mato Grosso state, Brazil. The data were collected under the project Sustainable Landscapes, a project supported by the United States Agency for International Development (USAID) and US Department of State. The United States Forest Service working in collaboration with the Brazilian Agricultural Research Corporation (Embrapa) have made possible the provision of high accuracy LiDAR data aiming at developing new methods and generating knowledge in the field. This dataset contains: a. Classified LAS formatted point cloud data (vendor delivered); b. Digital Terrain Model (vendor delivered); c. Map of LiDAR coverage area and block boundaries; “Data were acquired by the Sustainable Landscapes Brazil project supported by the Brazilian Agricultural Research Corporation (Embrapa), the US Forest Service, USAID and the US Department of State."
DOI: 10.4121/dbd0c89c-027d-4604-9db0-afb694869b80
title: Raw data and analysis codes underlying the dissertation "A Framework for Optimal Reservoir Operation to Improve Downstream Aquatic Environment: Application to Nakdong River Basin in South Korea"

description: These raw data and analysis codes were produced as parts of a PhD thesis. The research objective is to establish a framework for optimal reservoir operation to reduce the frequency of harmful cyanobacterial blooms downstream and to demonstrate the applicability of the framework using observation data for a study area. The raw data was collected from websites that are open to the public. The sources of raw data have been indicated in the papers published and the thesis.
DOI: 10.4121/dbd0c89c-027d-4604-9db0-afb694869b80.v1
title: Raw data and analysis codes underlying the dissertation "A Framework for Optimal Reservoir Operation to Improve Downstream Aquatic Environment: Application to Nakdong River Basin in South Korea"

description: These raw data and analysis codes were produced as parts of a PhD thesis. The research objective is to establish a framework for optimal reservoir operation to reduce the frequency of harmful cyanobacterial blooms downstream and to demonstrate the applicability of the framework using observation data for a study area. The raw data was collected from websites that are open to the public. The sources of raw data have been indicated in the papers published and the thesis.
DOI: 10.6084/m9.figshare.22094727
title: Application of surrogate safety measures in higher levels of automated vehicles simulation studies: A review of the state of the practice

description: Surrogate safety measures (SSMs) are developed and applied as alternatives or complements of safety analyses mainly due to important road crash data availability and reliability limitations. Automated vehicles (AVs) have recently emerged as a prominent solution to mitigate transport externalities and increase road traffic safety. Due to the novelty of the technology and the lack of real-world data, traffic simulation combined with SSMs is the most common approach to quantify their impact. This study aims to provide an overview of the state of the practice and, more specifically, examine the applicability of applied SSMs on higher levels of AVs (HAVs). The methodological approach consists of a comprehensive literature search, which aims to provide an overview of the applied SSMs, followed by a critical assessment of the findings. In total, 17 studies and 11 different SSMs were identified and reviewed. Findings suggest that available SSMs are suitable measures to appropriately estimate the relative safety performance of HAVs and indicate their potential implications due to their expected rule-based driving behavior. However, in some cases, it was noticed that they could not efficiently capture the technological capabilities of HAVs, e.g., shorter headways and faster reaction times, which may lead to false alarms. Despite the available evidence, there are still significant gaps and certain limitations, as no comparisons between different measures exist, or the validity of the applied measures could not be assessed based on historical road crash data. This work aims to help researchers and practitioners choose the most appropriate SSMs to evaluate HAVs’ safety performance. Finally, several research gaps are identified, and recommendations for potential future research directions are presented.
DOI: 10.6084/m9.figshare.22094727.v1
title: Application of surrogate safety measures in higher levels of automated vehicles simulation studies: A review of the state of the practice

description: Surrogate safety measures (SSMs) are developed and applied as alternatives or complements of safety analyses mainly due to important road crash data availability and reliability limitations. Automated vehicles (AVs) have recently emerged as a prominent solution to mitigate transport externalities and increase road traffic safety. Due to the novelty of the technology and the lack of real-world data, traffic simulation combined with SSMs is the most common approach to quantify their impact. This study aims to provide an overview of the state of the practice and, more specifically, examine the applicability of applied SSMs on higher levels of AVs (HAVs). The methodological approach consists of a comprehensive literature search, which aims to provide an overview of the applied SSMs, followed by a critical assessment of the findings. In total, 17 studies and 11 different SSMs were identified and reviewed. Findings suggest that available SSMs are suitable measures to appropriately estimate the relative safety performance of HAVs and indicate their potential implications due to their expected rule-based driving behavior. However, in some cases, it was noticed that they could not efficiently capture the technological capabilities of HAVs, e.g., shorter headways and faster reaction times, which may lead to false alarms. Despite the available evidence, there are still significant gaps and certain limitations, as no comparisons between different measures exist, or the validity of the applied measures could not be assessed based on historical road crash data. This work aims to help researchers and practitioners choose the most appropriate SSMs to evaluate HAVs’ safety performance. Finally, several research gaps are identified, and recommendations for potential future research directions are presented.