cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ztpkpbm43x.1
title: "Magnetic properties of late Holocene Dead Sea sediments as a monitor of regional hydroclimate": G-cubed:manuscript #: 2020GC009176

description: Diagenetic processes in anoxic sedimentary environments influence sediment magnetic properties mainly through dissolution of detrital magnetite and precipitation of authigenic greigite. Recently exposed late Holocene Dead Sea sediments provide an opportunity to study the processes governing greigite formation and preservation, and their relation to different hydrological settings. Magnetic data and pore-fluid compositions were obtained from three Holocene sections along a N-S transect on the western Dead Sea shore: Og, Ein-Feshkha, and Ein-Gedi. The northern sections are closer to the major freshwater source to the Dead Sea - the Jordan River. Detrital titanomagnetite is present at all sections, but greigite is the dominant magnetic phase at Og and Ein-Feshkha. Bulk rock magnetic data varies between and within the sections by over three orders of magnitude, where higher values indicate higher greigite concentrations. At the three sites, pore-fluids have similar or lower salinity than the modern and Holocene (hypolimnion) Dead Sea brine, with variable and dissolved iron (Fe2+) and sulfate (SO42-). Magnetic property changes are reflected by iron and/or sulfate microbial reduction that controlled sedimentary greigite formation. We propose that the N-S greigite decrease suggests that anoxic microbial activity was controlled by labile organic matter and/or reactive iron brought by, or formed as a result of, freshwater influx from the Jordan River. Hence, greigite concentration changes depended on past freshwater input to the hypersaline lake and proximity to the freshwater source. The apparent relationship between hydrological conditions and magnetic properties provides a new method to trace past hydrological changes in the Dead Sea.
DOI: 10.17632/896mg8ntsy.1
title: Contrasting population genetics of co-endemic cattle- and buffalo- derived Theileria annulata

description: The Illumina Mi-Seq post-run processing uses the barcoded indices to split all sequences by sample and generate FASTQ files. These were analysed using Mothur v1.39.5 software (Schloss et al., 2009) with modifications in the standard operating procedures of Illumina Mi-Seq (Kozich et al., 2013) in the Command Prompt pipeline as described by (Rehman et al., 2020) and (Sargison et al., 2019). Briefly, the raw paired-end reads were analysed to combine the two sets of reads for each T. annulata parasite population using make.contigs command, which requires ‘stability.files’ as an input. The ‘make.contigs’ command extracts sequence quality score data from FASTQ files, creating complements of the reverse and forward reads and joins them into contigs. It aligns the pairs of sequence reads and compares the alignments to identify any positions where the two reads disagree. Subsequently, there was a need to remove any sequences with ambiguous bases using the ‘screen.seqs’ command. The resulting dataset was aligned with a T. annulata cytochrome b reference sequence library prepared from the positive controls (fSupplementary Data S1) using the ‘align.seqs’ command. To confirm that these filtered sequences overlap the same region of the reference sequence library, the ‘screen.seqs’ command was run to show the sequences ending at the 517 bp of cytochrome b positions. Once all sequence reads were classified as T. annulata, a count list of the consensus sequences of each population was created using the ‘unique.seqs’ command, followed by the use of the pre.cluster command to look for sequences having up to two differences and to merge them in groups based on their abundance. Chimeras were identified and removed using the chimera.vsearch commands. The count list was further used to create FASTQ files of the consensus sequences of each sample using the ‘split.abund’ command to sort data into groups of rare and abundant based on the cut-off value, followed by the ‘split.groups’ command (Supplementary Data S2). Those samples yielding more than 1000 reads (implying sufficient gDNA for accurate amplification) were included in the cut-off value.
DOI: 10.17632/9t59zjtx3p.1
title: Data for: The Optomotor Response of Aging Zebrafish Reveals a Complex Relationship between Visual Motion Characteristics and Cholinergic System

description: This dataset was prepared for the article "The Optomotor Response of Aging Zebrafish Reveals a Complex Relationship between Visual Motion Characteristics and Cholinergic System". The main aim of the article was to investigate age-related changes in the motion detection of aging zebrafish (wild-type/AB-strain and achesb55/+). The dataset contains the optomotor responses of zebrafish to drifting gratings (i.e., first-order motion) with different contrast and spatial frequency levels. These responses were presented in the contour plots of Figure 2 and explained in the main text of the article. Overall, the findings suggested that contrast and spatial frequency has a significant effect on the optomotor responses, and in the contrast domain, the changes in the responses are dependent on the age and genotype of the zebrafish.
DOI: 10.17632/pdhrg3kkxr.1
title: The Face of Emotion

description: This research compared the two models of emotional lateralisation: the right hemisphere hypothesis and the valence hypothesis to ascertain whether the left cheek bias presents consistently for emotions of different valences. By using the left cheek bias paradigm we were able to determine which model was most supported. We assessed people’s perceptions of the five core emotions (happiness, sadness, anger, surprise, fear) expressed by left cheek and right cheek poses and aimed to determine whether perceptions of the emotions were influenced by the cheek shown (left or right cheek poses). It was hypothesised that if the valence hypothesis is correct, there would be higher ratings of positive emotions for right cheek poses and higher ratings of negative emotions for left cheek poses. If the right hemisphere hypothesis is correct, all ratings would be higher for left cheek poses across all emotional valences. We recruited 135 participants to complete an online survey depicting left and right cheek images. We found that the left cheek bias presents consistently for positive and negative emotions and thus, offered support for the right hemisphere hypothesis rather than the valence hypothesis.
DOI: 10.17632/38w3bpjr6w.1
title: Data: Fostering Socio-Emotional Competencies in Children with Autism using a Parent-Assisted Serious Game: A Multicenter Randomized Controlled Trial

description: The data set refers to a multicenter randomized controlled trial that was conducted to test the effectiveness of the parent-assisted serious game "Zirkus Empathico" against an active control group. Eighty-two children aged 5-10 years with ASC were assessed at baseline, after six weeks of treatment, and three-month follow-up. Parent-rated empathy (GEM) and emotion recognition skills (KERMIT) were defined as the primary outcomes. The secondary outcomes included measures of distant emotion recognition (EKMAN), emotional awareness (LEAS-C), emotion regulation (ERC ER; N/L), autism social symptomatology (SRS parent/teacher rating), and subjective therapy goals (GAS). Data from all randomized participants was used for primary and secondary analyses according to the intention-to-treat principle. The training effects were estimated using path analyses with maximum likelihood estimation and robust ‘Huber-White’ standard errors (MLR). We specified three different path models to test our hypotheses. Please see the provided R scripts for a detailed description of the analyses. All the analyses were conducted using the RStudio software version 1.3.1073 (RStudio Team, 2015).
DOI: 10.17632/t5ds33krvz.1
title: Data for: Estimation of genetic parameters for carotenoid traits in Chinese mitten crab, Eriocheir sinensis, females
DOI: 10.5281/zenodo.3899579
title: Data from the "The Psychology of Professional and Student Actors: Creativity, Personality, and Motivation"

description: Data associated with: Dumas, D., Doherty, M., Organisciak, P. (2020) "The Psychology of Professional and Student Actors: Creativity, Personality, and Motivation". PLOS ONE. Description of work associated with this data: As a profession, acting is marked by a high-level of economic and social riskiness concomitantly with the possibility for artistic satisfaction and/or public admiration. Current understanding of the psychological attributes that distinguish professional actors is incomplete. Here, we compare samples of professional actors (n = 104), undergraduate student actors (n = 100), and non-acting adults (n = 92) on 26 psychological dimensions and use machine-learning methods to classify participants based on these attributes. Nearly all of the attributes measured here displayed significant univariate mean differences across the three groups, with the strongest effect sizes being on Creative Activities, Openness, and Extraversion. A cross-validated Least Absolute Shrinkage and Selection Operator (LASSO) classification model was capable of identifying actors (either professional or student) from non-actors with a 92% accuracy and was able to sort professional from student actors with a 96% accuracy when age was included in the model, and a 68% accuracy with only psychological attributes included. In these LASSO models, actors in general were distinguished by high levels of Openness, Assertiveness, and Elaboration, but professional actors were specifically marked by high levels of Originality, Volatility, and Literary Activities.
DOI: 10.5281/zenodo.3899578
title: Data from the "The Psychology of Professional and Student Actors: Creativity, Personality, and Motivation"

description: Data associated with: Dumas, D., Doherty, M., Organisciak, P. (2020) "The Psychology of Professional and Student Actors: Creativity, Personality, and Motivation". PLOS ONE. Description of work associated with this data: As a profession, acting is marked by a high-level of economic and social riskiness concomitantly with the possibility for artistic satisfaction and/or public admiration. Current understanding of the psychological attributes that distinguish professional actors is incomplete. Here, we compare samples of professional actors (n = 104), undergraduate student actors (n = 100), and non-acting adults (n = 92) on 26 psychological dimensions and use machine-learning methods to classify participants based on these attributes. Nearly all of the attributes measured here displayed significant univariate mean differences across the three groups, with the strongest effect sizes being on Creative Activities, Openness, and Extraversion. A cross-validated Least Absolute Shrinkage and Selection Operator (LASSO) classification model was capable of identifying actors (either professional or student) from non-actors with a 92% accuracy and was able to sort professional from student actors with a 96% accuracy when age was included in the model, and a 68% accuracy with only psychological attributes included. In these LASSO models, actors in general were distinguished by high levels of Openness, Assertiveness, and Elaboration, but professional actors were specifically marked by high levels of Originality, Volatility, and Literary Activities.
DOI: 10.21227/jp5b-sk12
title: Data for paper 'Integrated Simulation of Electromechanical and Thermal Dynamics of Voltage Source Converters'

description: This dataset contains python / jupyter notebooks with thermal magnitude data and loss simulations from IGBT-based converters. It also has implemented the proposed model and the results of the validations that compare the model with the simulations of three IGBT manufacturers.
DOI: 10.21227/95a8-qs30
title: Data for paper 'Integrated Simulation of Electromechanical and Thermal Dynamics of Voltage Source Converters'

description: This dataset contains python / jupyter notebooks with thermal magnitude data and loss simulations from IGBT-based converters. It also has implemented the proposed model and the results of the validations that compare the model with the simulations of three IGBT manufacturers.
DOI: 10.17632/4m7z3gy5yc.1
title: The nuclear pore primes recombination-dependent DNA synthesis at arrested forks by promoting SUMO removal

description: Raw pictures published in Kramarz et al. submitted to nature communications
DOI: 10.17632/p8p6z4sxbz.1
title: Data for: Simple synthesis of layered H-octosilicate in situ surface-modified with lecithin

description: The XRD, IR and TG data of the samples
DOI: 10.17632/gc4knh2rt5.1
title: Child Lung Health Study

description: We conducted a cross-sectional study of children aged 6-8 years, in Chikhwawa, rural Malawi, including households from communities participating in the Cooking and Pneumonia Study (CAPS), a trial of cleaner-burning biomass-fuelled cookstoves. We assessed; chronic respiratory symptoms, anthropometry, spirometric abnormalities (using Global Lung Initiative 2012 African-American reference equations), and personal carbon monoxide (CO) exposure. Full manuscript, including data collection methods, is available at http://dx.doi.org/10.1136/thoraxjnl-2018-212945 This dataset includes; questionnaire data (n=803): age, sex, anthropometry, respiratory symptoms, CAPS allocation; spirometry (pre-bronchodilator spirometry attempted by 802 children: grade A-C quality for 522 children), carboxyhaemoglobin (CoHb) measurement (n=798) and 24-hour CO monitoring (n=738).
DOI: 10.17632/89xh5zp6zr.1
title: Dasycladales phylogeny
DOI: 10.21227/ktfx-6421
title: Data for paper 'Integrated Simulation of Electromechanical and Thermal Dynamics of Voltage Source Converters'

description: This dataset contains python / jupyter notebooks with thermal magnitude data and loss simulations from IGBT-based converters. It also has implemented the proposed model and the results of the validations that compare the model with the simulations of three IGBT manufacturers.
DOI: 10.17632/29yv8pmr56.2
title: Skin responses in newly diagnosed polyneuropathy, organomegaly, endocrinopathy, monoclonal, gammopathy, and skin changes (POEMS) syndrome after therapy with low-dose lenalidomide plus dexamethasone: A single-arm prospective phase II study

description: Supplementary Appendix
DOI: 10.17632/74htrzz89v.1
title: Apocynum venetum Full-length Transcriptome

description: Apocynum venetum Full-length Transcriptome raw assembly and annotation files
DOI: 10.17632/zwd3w29n6y.1
title: LINF_010007600

description: Thioredoxin
DOI: 10.17632/xg6sknjx5h.1
title: TexatualAnalysisShunBao

description: - The PaperData.xlsx file contains the frequencies of narratives extracted from the Shanghai ShunBao. - The PaperLasso.Rmd file contain R code for Ridge, LASSO and ElasticNets.
DOI: 10.17632/gjj6vjvh82.1
title: LINF_010007800

description: Cytochrome c-oxidase biogenesis protein Cmc1 like protein
DOI: 10.17632/rxt33b7sn6.1
title: Noise Pollution and Effectiveness of Policy Interventions for its Control in the Capital City of Nepal

description: This datasets contains the data of the study "Noise Pollution and Effectiveness of Policy Interventions for its Control in the Capital City of Nepal". This data contains noise level measurement data at different locations of Kathmandu.
DOI: 10.17632/t4sm9dsdkx.1
title: wujing-msit

description: Eighteen subjects (mean age: 29.3 years, range: 20–49 years) participated in the experiment. All subjects were healthy without a history of neurological or psychiatric episodes. The participants gave written informed consent, and the protocol was approved by the ethics committee of the First Affiliated Hospital of Xi'an Jiaotong University, China. This data contains the fMRI, DTI and structural MRI.
DOI: 10.17632/fvdjt6nrzw.2
title: Supplemental Online Material_Analysis of insecticide residues in honey

description: Supplemental online material of article entitled: Analysis of insecticide residues in honey by liquid chromatography-tandem mass spectrometry using QuEChERS optimized by the Plackett Burman design
DOI: 10.17632/9tv8cbg5kc.2
title: Supplementary: Utility of confocal microscopy in the management of lentigo maligna and lentigo maligna melanoma

description: Supplementary figures and tables for systematic review of confocal microscopy used for lentigo maligna and lentigo maligna melanoma management published in Journal of the American Academy of Dermatology
DOI: 10.17632/26t3yx3c5c.1
title: Modulation of anticipatory visuospatial attention in sustained and transient tasks

description: Data for the study entitled: "Modulation of anticipatory visuospatial attention in sustained and transient tasks"
DOI: 10.17632/tj2jx97yr4.1
title: The Tension Between Cognitive and Regulatory Flexibility: Cognitive Flexibility is More Strongly Associated with Current PTSD Symptoms

description: In recent years, researchers have tried to unpack the meaning of the term flexibility and test how different constructs of flexibility are associated with various psychopathologies. For example, it is apparent that high levels of flexibility allow individuals to adaptively cope and avoid psychopathology following traumatic events, but the precise nature of this flexibility is ambiguous. In this study, we focus on two central constructs: cognitive flexibility – the ability to recognize and implement possible responses to a situation– and regulatory flexibility – the ability to modulate emotional expression and experience across situations. We aim to explore the connection between cognitive and regulatory flexibility and evaluate their relative effect on PTSD symptoms. Trauma-exposed college students (N = 109, M = 25.31, SD = 4.59) were assessed for cognitive and regulatory flexibility and current and lifetime PTSD symptoms. We predicted and found a relatively weak, yet significant, overlap between participants’ cognitive and regulatory flexibility. Importantly, while both cognitive and regulatory flexibility were associated with lifetime PTSD symptoms, only cognitive flexibility was associated with current PTSD symptoms. The findings illuminate the possible value of differentiating between constructs of flexibility in predicting PTSD symptoms, hinting at their mitigating effects on current versus lifetime PTSD symptoms.
DOI: 10.17632/mx3j8ncb5y.2
title: Thinking out of the box: on the abiity of Zea mays L. to biotrasform aflatoxin B1 into its modified forms

description: Raw files acquired using UHPLC-Q-Exactive mass spectrometer. Roots (R_) and leaves (L_) examples file are available.
DOI: 10.17632/gj577x5dtd.1
title: Ecosystem consequences of multi-trait response to environmental changes in Japanese medaka, Oryzias latipes

description: Fish (growth, excretion, boldness, feeding, nutrient body content) and mesocosms (zooplankton, zoobenthos, GPP, etc) variables
DOI: 10.17632/7kx38d9h2v.3
title: Application of 3D Reflectance Confocal Microscopy: Melanocytic Proliferations as 3D Models; JAAD Supplemental Material

description: Melanoma on chronically sun-damaged skin (MSDS) is challenging to detect. Reflectance confocal microscopy (RCM) increases diagnostic accuracy, but relies upon interpretation of 2D horizontal sections. Our objective was to determine whether existing technology could be used to create 3D models, which would expand on data available for discriminating skin biology. Supplemental Document: Expanded manuscript describing the background and process. Supplemental Figure 1. Object files. 3D Model from confocal image stack of a selected large atypical cell showing multiple dendrites extending from the body of the cell and nuclear abnormalities. The opacity of the cell body is reduced, such that the nucleus can be seen internally. The object can be rotated freely and examined from any angle using a 3D viewer. NOTE: In order to view the 3D object file interactively and with transparency using Windows 10 3D Viewer, please unzip file containing the .mtl and .obj to the DESKTOP (not a network drive or server). Once both files are on the desktop, double clicking on the .obj file will allow the native 3D viewer to open the model. Supplemental Figure 2. 3D reconstruction of fields of melanoma cells sampled from confocal stacks. The left panel reveals marked pleomorphism while the right panel reveals a relatively uniform, although atypical, collection of cells. Scale bar is 50µm. Supplemental Figure 3. Volume rendering of a stack of confocal images of melanoma on sun-damaged skin viewed along the z axis. Most refractile melanocytic cells are located in the basal layer at approx. 38µm from stratum corneum (yellow arrow), while rare pagetoid cells are present higher in the epidermis (green arrow). This image also reveals marked flattening of the DEJ (orange bracket). Scale Bar is 50µm. Supplemental Figure 4. Movie (.AVI) of a 3D reconstruction of a confocal image stack examining the DEJ by showing the dermal papillae, the blood vessels inside the DP and an adjacent hair follicle.
DOI: 10.17632/c7r7dw9p42.1
title: Pan-cancer analysis of human endogenous retroviruses and KRAB zinc-finger proteins

description: Summary: Gene expression aberration is a hallmark of cancers, but the mechanisms underlying such aberrations remain unclear. Human endogenous retroviruses (HERVs) are genomic repetitive elements that potentially function as enhancers. Since numerous HERVs are epigenetically activated in tumors, their activation could cause global gene expression aberrations in tumors. To understand the roles of HERV-derived enhancers in cancers, we performed a pan-cancer analysis focusing on the enhancer activity of HERVs using The Cancer Genome Atlas (TCGA) and Cancer Cell Line Encyclopedia (CCLE) datasets. We show that HERV activation in tumors leads to the upregulation of hundreds of transcriptional suppressors, namely Krüppel-associated box domain-containing zinc-finger family proteins (KZFPs). KZFP genes are preferentially encoded nearby the activated HERVs in tumors and transcriptionally regulated by these adjacent HERVs. Increased HERV and KZFP expression in tumors was associated with better disease conditions. Increased KZFP expression in cancer cells altered the expression of genes related to the cell cycle and cell-matrix adhesion and suppressed cellular growth, migration, and invasion abilities. Our data suggest that HERV activation in tumors drives the synchronized elevation of KZFP expression, presumably leading to tumor suppression. The related computer codes are available via the GitHub repository (https://github.com/TheSatoLab/HERV_Pan-cancer_analysis). Reference: Endogenous retroviruses drive KRAB zinc-finger protein family expression for tumor suppression. Jumpei Ito†, Izumi Kimura†, Andrew Soper, Alexandre Coudray, Yoshio Koyanagi, Hirofumi Nakaoka, Ituro Inoue, Priscilla Turelli, Didier Trono, and Kei Sato (2020) Science Advances.