cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28881314.v4
title: Comprehensive Climate, Soil, Agronomic, and Management Dataset for Data-Driven Cotton Irrigation in NW China

description: This unique dataset integrates climate data, real-time soil sensor data, agronomic data, and crop management data, specifically designed to enhance smart irrigation decision-making for cotton in the semi-arid climate of Northwest China. The dataset establishes correlations between cotton yields, soil conditions, and climatic factors, including detailed records of irrigation, fertilization, crop yields, and soil moisture. To demonstrate its utility, the dataset was validated through the application of advanced machine learning techniques, including reinforcement learning (RL) and algorithms such as DNN, XGBoost, MLP, and RF, to optimize irrigation strategies and simulate irrigation-yield relationships. These approaches effectively balanced crop yield maximization with water use efficiency, underscoring the dataset’s potential to advance sustainable agricultural practices. This dataset serves as a valuable resource for data-driven agricultural research, enabling smart decision-making, validating crop models, and improving agricultural sustainability.
DOI: 10.6084/m9.figshare.11413878.v1
title: Proteome database of Staphylococcus aureus NCTC 8325

description: A Gram-positive opportunistic human pathogen of increasing concern, <i>Staphylococcus aureus</i> is also a commensal on many parts of the human body. What remain enigmatic are the molecular switches and environmental conditions that drove a commensal into a pathogenic lifestyle. Specifically, activating pathogenesis mechanisms that harms the host may incur a counter-offensive from the body’s immune system. Thus, microorganisms capable of dual commensal and pathogenic lifestyle are of research interests, particularly from the perspective of developing therapeutic strategies that could quickly ameliorate a nascent infection which help reduce morbidity and mortality. In <i>S. aureus</i> case, increasing resistance to a variety of frontline antibiotics makes this bacterium of increasing medical concern, which motivates the search for a variety of biophysical and biochemical approaches for its eradication or keeping it under control. This work sought to provide some fundamental information of <i>S. aureus</i> NCTC 8325 to help guide experimental strategies seeking to both understand the species pathogenesis mechanisms as well as molecular events that potentiate the switch from commensal to a pathogenic lifestyle. Specifically, the UniProt proteome of <i>S. aureus</i> NCTC 8325 was parsed by an in-house MATLAB software to yield a database comprising protein name, amino acid sequence, number of residues, molecular weight and nucleotide sequence, which could collectively inform the genetic and proteomic repertoire of the organism. Knowledge of the molecular entities available would hopefully help crystallise hypothesis-driven research seeking to unveil the molecular effectors that guide pathogenesis in this otherwise commensal organism. Alternatively, a systems-based approach could also use the proteome complement as guide in designing microarray experiments to unveil differential gene expression of the species in health and disease.<br><br>
DOI: 10.6084/m9.figshare.13517105.v1
title: A Personalized Activity-based Spatiotemporal Risk Mapping Approach to COVID-19 Pandemic

description: The datasets used for this manuscript were derived from multiple sources: Denver Public Health, Esri, Google, and SafeGraph. Any reuse or redistribution of the datasets are subjected to the restrictions of the data providers: Denver Public Health, Esri, Google, and SafeGraph and should consult relevant parties for permissions.<br>1. COVID-19 case dataset were retrieved from Denver Public Health (Link: https://storymaps.arcgis.com/stories/50dbb5e7dfb6495292b71b7d8df56d0a )<br>2. Point of Interests (POIs) data were retrieved from Esri and SafeGraph (Link: https://coronavirus-disasterresponse.hub.arcgis.com/datasets/6c8c635b1ea94001a52bf28179d1e32b/data?selectedAttribute=naics_code) and verified with Google Places Service (Link: https://developers.google.com/maps/documentation/javascript/reference/places-service)<br>3. The activity risk information is accessible from Texas Medical Association (TMA) (Link: https://www.texmed.org/TexasMedicineDetail.aspx?id=54216 )<br>The datasets for risk assessment and mapping are included in a geodatabase. Per SafeGraph data sharing guidelines, raw data cannot be shared publicly. To view the content of the geodatabase, users should have installed ArcGIS Pro 2.7. The geodatabase includes the following:<br>1. POI. Major attributes are locations, name, and daily popularity.<br>2. Denver neighborhood with weekly COVID-19 cases and computed regional risk levels.<br>3. Simulated four travel logs with anchor points provided. Each is a separate point layer.
DOI: 10.6084/m9.figshare.23589747.v2
title: <strong>Norepinephrine release in the cerebellum contributes to aversive learning</strong>

description: These excel sheets contain raw data required to produce the data in Stanley et al. 2023 "<strong>Norepinephrine release in the cerebellum contributes to aversive learning</strong>".
DOI: 10.6084/m9.figshare.26028790.v1
title: <b>List of electrode materials</b>

description: Clustering of Metal Oxides for Pseudocapacitors using Unsupervised Machine Learning techniques
DOI: 10.6084/m9.figshare.28836392.v1
title: Family Communication dataset and materials

description: Family Communication dataset and materials
DOI: 10.17632/c77sxxms9f
title: Brand Management Research Data

description: The brand management reseach & publication dataset, which was indexed by Scopus from 1968 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.6084/m9.figshare.22114913.v1
title: Data and code for Liang et al. Assessing the illegal hunting of native wildlife within China

description: This repository contains codes and data for Liang et al. Assessing the illegal hunting of native wildlife within China. This includes two analyses. First, the prefecture-level analysis for assessing the relationships between the ecological and socio-economic variables and the illegal hunting convictions (all verdicts, type 1 verdicts, type 2 verdicts, and total number of individual animals taken) of four vertebrate groups (amphibians, reptiles, birds, and mammals) in China. Second, the trait-based analyses (with phylogenetic logistic regression models) for predicting the probability that a species is known to be illegally hunted using the species' traits for the four vertebrate groups.
DOI: 10.6084/m9.figshare.26824222.v1
title: Prism Data

description: Dataset and statistics for all collected behavioral and cell culture experiments
DOI: 10.6084/m9.figshare.9761528.v1
title: LSK109_R10_NBD_EcoliK12MG1655_ZymoMock.tar.gz

description: Raw nanopore reads from EcoliK12MG1655 (demultiplex and look for barcode 13) related to the blogpost (https://albertsenlab.org/ar10e-we-there-yet/)
DOI: 10.17605/osf.io/ra7kg
title: A CNN-BiLSTM-GAT Model for Predicting RNA 3D Structures in the Stanford RNA Folding Challenge 2025
DOI: 10.6084/m9.figshare.12220361.v1
title: Supplementary Material for: Adverse Drug Reactions during Real-Life Use of Direct Oral Anticoagulants in Italy: An Update Based on Data from the Italian National Pharmacovigilance Network

description: <b><i>Background:</i></b> The availability of direct oral anticoagulants (DOAC) in clinical practice has transformed the health care provided to patients for the prevention and treatment of thromboembolism. Safety and efficacy data guide clinicians in the choice of the drug used. To date, no evidence is available from head-to-head trials comparing different DOAC with regard to safety and efficacy; information is mainly derived from several meta-analyses and real-life studies. Conclusions from these studies are inconsistent and unsatisfactory. The evaluation of self-reported adverse drug reactions (ADR) available from databases of drug-regulatory agencies such as the Italian Medicines Agency (AIFA) pharmacovigilance database represents a novel aid to guide decision-making. <b><i>Objective:</i></b> To analyze potential suspected ADR of DOAC using a previously described risk index (RI) in daily clinical practice in Italy. <b><i>Methods:</i></b> The National Pharmacovigilance Network database (from the AIFA website) was searched in order to retrieve information on all ADR related to oral anticoagulants occurring from 2013 to 2018. The ADR RI for each drug was calculated, where an RI = 1 indicates a balance between the percentage of ADR share and the percentage of market share for each DOAC; and an RI &lt;1 indicates a rate of ADR lower than the rate of market share (safer DOAC). The following DOAC molecules were considered: dabigatran, rivaroxaban, apixaban, and edoxaban. <b><i>Results:</i></b> The results showed that rivaroxaban is the DOAC with the lowest RI among the 4 molecules available today in Italy. <b><i>Conclusions:</i></b> Based on the RI, we identified rivaroxaban as the DOAC having the best safety profile.
DOI: 10.6084/m9.figshare.13026530.v2
title: A dataset on wave propagation through vegetation with coexisting currents

description: This dataset was prepared to explore the effect of currents on wave dissipation by vegetation (hereafter referred as WDV) by conducting flume experiments with stiff plant mimics in combined wave-flow conditions. Two flume experiments with following and adverse currents were carried out respectively in a 40-m-long and 0.8-m-wide wave flume of the Fluid Mechanics Laboratory at Delft University of Technology and in a 26-m-long, 0.6-m-wide, 0.6-m-high wave flume in Sun Yat-sen University. Wave height data, velocity data and force data were obtained in these two flume experiments. Notably, drag coefficient data were calculated using calibration method and direct measurement method. The data sets presented here includes the wave data, velocity data, force data, velocity profile and drag coefficient.
DOI: 10.6084/m9.figshare.16946360.v1
title: Additional file 8 of High throughput sequencing of whole transcriptome and construct of ceRNA regulatory network in RD cells infected with enterovirus D68

description: Additional file 8. KEGG enrichment of DEGs in RD cell
DOI: 10.6084/m9.figshare.19669278.v1
title: Repository_Darnajoux et al_2022_JGR_BGC

description: These files represent the full dataset and the R code to reproduce the Figure and Supplementary Figure from the article "Ammonium sensitivity of biological nitrogen fixation in sulfate-reducing diazotrophs and coastal salt marsh sediments", by Romain Darnajoux, Linta Reji, Xin Rei Zhang, Katja E. Luxem, and Xinning Zhang (Princeton University, Department of Geosciences). <br>
DOI: 10.6084/m9.figshare.22183009.v1
title: Measuring behaviour in hens using an ethogram to assess analgesia during further refinement of a high welfare, on-hen, poultry red mite feeding device.

description: Data for power calcs (mite feeding & mortality) and power calcs, ethogram, ethogram scores, resp scores,
DOI: 10.6084/m9.figshare.7451360.v3
title: Jiaohe-figshare-data

description: The 54.12-ha large-scale observational site (LSOS) is located in the Jiaohe Management Bureau in Jilin Province, China. The area has a mean annual temperature of 3.8 °C and a mean annual precipitation of 695.9 mm. The hottest month is July with the average daily temperature of 21.7 °C, whereas the coldest month is January with the average daily temperature of -18.6 °C. The brown forest soil typical of the area has a rootable depth ranging between 20 and 100 cm. <br>We completely surveyed both sites in two consecutive inventories: the first inventory was conducted in 2010 and the second in 2015. On both sites, each of all free-standing woody stems with a diameter at breast height (dbh) greater than 1 cm was georeferenced and tagged, and the species and dbh were measured on site. A total of 46,458 trees were tallied in 2010, and 44,564 trees were tallied in 2015.
DOI: 10.17605/osf.io/6d23v
title: CoI

description: The file contains screenshots and content analysis data.
DOI: 10.6084/m9.figshare.21222557.v1
title: Forged Images

description: This dataset includes the original GRIP dataset that consists of 80 copy-move forged images with 768 X 1024 pixels and unrecognizable forgery by human eyes. It also includes images that are post-processed by different operations, including JPEG compression, noise additive, blurring, color quantization, contrast adjustment, and brightness adjustment.
DOI: 10.6084/m9.figshare.22691176.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.24047022.v1
title: FINAL REPORT

description: The document contains the final report that student'teachers submitted at the end of the of the process of te teaching practicum.
DOI: 10.17632/rft4ytm4m2
title: Molecular Dynamics Study of Citrullinated Proteins Associated with the Development of Rheumatoid Arthritis

description: Results of the molecular dynamics experiment with the structural blocks of target proteins, the modification of which is associated with rheumatoid arthritis development
DOI: 10.6084/m9.figshare.10047293.v1
title: Placenta Research3 2_4_2019.R from Gestational growth trajectories derived from a dynamic fetal–placental scaling law

description: Fetal trajectories characterizing growth rates <i>in utero</i> have relied primarily on goodness of fit rather than mechanistic properties exhibited <i>in utero</i>. Here, we use a validated fetal–placental allometric scaling law and a first principles differential equations model of placental volume growth to generate biologically meaningful fetal–placental growth curves. The growth curves form the foundation for understanding healthy versus at-risk fetal growth and for identifying the timing of key events <i>in utero</i>.
DOI: 10.6084/m9.figshare.19306946.v1
title: Zehra Betul Turel_PhD Thesis Datasets for each empirical chapter

description: Planarians' Conditioned Place Preference scores were recorded. In this dataset, time spent in their less preferred side of the petri dish is presented over the experimental sessions.
DOI: 10.6084/m9.figshare.28784114.v1
title: Classification of Hyper B-Algebra of Order 3 up to Isomorphism.txt

description: This file contains the complete classification of all hyper B-algebras of order 3, up to isomorphism.
DOI: 10.6084/m9.figshare.29189531.v1
title: Supplementary material

description: We have demonstrated previously (AJP-lung, 2024) that the collagen crosslinking enzyme LOXL2 is integral in the development and progression of pulmonary hypertension (PH). Here we are testing the translational potential of targeting this enzyme in humans, by evaluating if serum LOXL2 level could be used as a biomarker for PH.
DOI: 10.6084/m9.figshare.5718769.v1
title: Accuracy of linear measurements performed with two imaging software in cone-beam computed tomography scans of dry human mandibles

description: ABSTRACT The present study aimed to assess the accuracy of linear measurements performed with two software packages in multislice (MSCT) and cone beam (CBCT) computed tomography (CT) images. The sample consisted of 10 human mandibles marked standardly 8 times with metallic orthodontic wires. The mandibles underwent both MSCT and CBCT scanning and were measured linearly and digitally with two software packages, namely Studio 3.1® (Anne Solutions®, SP, Brazil) (ST) and Implant Viewer 2.817® (Anne Solutions®, SP, Brazil) (IV). The linear measurements were the mandibular height (MH) and width (MW), and the distance from the alveolar ridge to the mandibular canal (AC). To validate the measurements, the mandibles were sectioned in the marked regions and measured with a digital caliper. Statistically significant differences were not observed between the measurements (MH, MW, and AC) taken digitally with the two software packages from images obtained from the two scanning modalities (MSCT and CBCT) and the measurements taken manually with a digital caliper (p&gt;0.05). MSCT and CBCT images measured digitally with ST and IV software packages resulted in reliable outcomes when compared to measurements obtained manually. Both software and imaging modalities are reliably useful for planning surgical procedure in the dental practice.
DOI: 10.17632/fnxy8z8894
title: IVL-SYNTHSFM-v2: a dataset for the evaluation of 3D reconstruction pipelines

description: This dataset contains images of five 3D models that can be used to evaluate pipelines for 3D reconstruction from images. Each model is placed in a reference scene and is rendered under different lighting and camera conditions. For each of the five models, 8 scenes are created and for each scene 100 images are taken from different points of view.
DOI: 10.17632/hgx5742cd8
title: TEA CO2 Laser Simulator: A software tool to predict the output pulse characteristics of TEA CO2 laser

description: Abstract "TEA CO_2Laser Simulator" has been designed to simulate the dynamic emission processes of the TEA CO_2laser based on the six-temperature model. The program predicts the behavior of the laser output pulse (power, energy, pulse duration, delay time, FWHM, etc.) depending on the physical and geometrical input parameters (pressure ratio of gas mixture, reflecting area of the output mirror, media length, losses, filling and decay factors, etc.). Title of program: TEA _CO2 Catalogue Id: ADVW_v1_0 Nature of problem "TEA CO 2 Laser Simulator" is a program that predicts the behavior of the laser output pulse by studying the effect of the physical and geometrical input parameters on the characteristics of the output laser pulse. The laser active medium consists of a CO 2 -N 2 -He gas mixture. Versions of this program held in the CPC repository in Mendeley Data ADVW_v1_0; TEA _CO2; 10.1016/j.cpc.2005.05.007 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.25099952.v1
title: raw_data

description: Raw data files for he Nacob Project
DOI: 10.6084/m9.figshare.25796392.v2
title: Artifact for "On Understanding and Forecasting Fuzzers Performance with Static Analysis"

description: This file contains the experiment data for our paper "On Understanding and Forecasting Fuzzers Performance with Static Analysis"<br>feature.zip is the file that contains the artifact for the extracted program features.lto_experiment.zip is the file that contains the lto-compiled program binaries for function signature comparison.coverage_experiment_data.zip is the file that contains the program binaries for extracting llvm coverage.fuzzbench_data.zip contains all the coverage experiments data from fuzzbench.<br>
DOI: 10.6084/m9.figshare.5379583.v1
title: Efficiency of subaquatic light traps

description: Subaquatic light traps are often used for sampling of the aquatic insects; however, their efficiency has not been tested yet. Here, we describe the use of such traps, illustrate the design of a simple trap allowing standardised sampling, and present results of assessment of the light trap efficiency according to the different turbidity levels, as well as model insects’ escape rates. The effect of turbidity on the capture efficiency was not significant for <i>Sigara lateralis</i> (Leach, 1817), <i>Notonecta glauca</i> Linnaeus, 1758 and <i>Corixa punctata</i> (Illiger, 1807) and was marginally significant for <i>Chaoborus</i> sp. Escape rates were affected by the entrance size and daylight exposure time. Although subaquatic light traps are helpful for standardised sampling, their entrance should be adequate for the target species, and the traps should be removed soon after the dawn or the resulting specimen counts should be corrected for the daylight exposure time before the trap removal.
DOI: 10.6084/m9.figshare.16736728.v1
title: Supplementary Material for: Normal Values for Cerebrospinal Fluid in Neonates: A Systematic Review

description: <b><i>Background:</i></b> The diagnosis of neonatal meningitis often rests on microscopic and biochemical findings in the cerebrospinal fluid (CSF). There is ongoing uncertainty about age-related normal values for CSF findings in neonates, and many previous studies have included infants in whom antibiotics were administered before lumbar puncture or in whom viral meningitis was not excluded. <b><i>Methods:</i></b> A systematic search was done using MEDLINE and EMBASE to identify original studies which investigated CSF normal values in either healthy neonates or febrile neonates in whom bacterial and viral meningitis were reliably excluded. <b><i>Results:</i></b> We identified seven studies investigating 270 term and 96 preterm neonates. There were minimal differences between preterm and term neonates in the CSF white blood cell (WBC) count and glucose concentration. In contrast, the CSF neutrophil count and protein concentration were influenced by gestational and chronological age. In the four studies that reported individual patient data, in 95% of cases the CSF WBC count was &lt;12 cells/μL in preterm and &lt;10 cells/μL in term neonates, the neutrophil count was &lt;16 and 8 cells/μL, and the protein concentration was &lt;210 and 110 mg/dL, respectively. <b><i>Conclusion:</i></b> The normal range for CSF parameters in neonates is different to that in older infants, and some parameters are influenced by gestational and chronological age. CSF parameters alone are not sufficiently reliable to exclude meningitis.
DOI: 10.6084/m9.figshare.19134722.v1
title: MIDORI2 database of CO1 sequences formatted to compare the performance of five taxonomic assignment programs

description: A test of the accuracy of taxonomic assignments of some <i>CO1</i> sequences was built into the technical validation process of MIDORI2. We removed 186 complete mitochondrial <i>CO1 </i>gene sequences, one from each of the 186 taxonomic classes represented in MIDORI2, from the LONGEST_GB242 <i>CO1</i> database to use as queries.Accuracy tests were conducted for three regions of the query sequences: 1) the complete mitochondrial <i>CO1</i>, 2) the ~658 bp <i>COI </i>“barcode region” (Folmer et al., 1994), and 3) a ~313 bp fragment (Leray et al., 2013) within the barcode region.<br>The files contains <i>CO1</i> sequences of the MIDORI2 database. The 186 mitochondrial <i>CO1 </i>gene sequences, that were used as query to compare the performance of five taxonomic assignment programs (Qiime2, Mothur, RDP classifier, Sintax and BLAST+), were removed from these files.
DOI: 10.6084/m9.figshare.19719202.v1
title: Hot topics in ecology

description: See README in .xlsx file.