cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5104609.v1
title: Supplementary Material for: Characterising alternate splicing and tissue specific expression in the chicken from ESTs

description: Alternate splicing is believed to produce the greatest diversity in transcriptional complexity and function in eukaryotic species. In this study, we present an analysis of alternative splicing events that occur in the chicken, using the recently sequenced genomic sequence and over 580,000 EST sequences mapped back to the genome. A carefully controlled EST-to-genome mapping pipeline is presented, based around the EXONERATE program using the est2genome model, which also considers several quality control steps to filter out erroneous matches. The data is then used to estimate the level of alternate splicing events with respect to Ensembl predicted transcripts. The EST-genome mappings are characterised at the exon level, in order to classify individual splicing events and provide estimates of novel transcripts not currently annotated by the Ensembl genome database. This is the first large scale analysis of this kind in an avian species, and suggests that chicken displays a similar level of alternate splicing as that found in other higher vertebrates such as human and mouse, both in terms of the number of genes that undergo alternate splicing events, and the average number of transcripts produced per gene. The EST data suggests alternate splicing may occur in some 50–60% of the chicken gene set and with an average of around 2.3 transcripts per gene which undergo this process. The EST data is also used to look at gene and transcript usage in the tissues sequenced in embryonic and adult libraries. Genes which display notable biases were analysed in more detail, including twinfilin-2 and embryonic heavy chain myosin. This also highlights several as yet functionally un-annotated genes which appear to be important in embryonic tissues and also undergo alternate splicing events. The analysis also demonstrates some of the difficulties involved in using EST-based data to annotate transcriptional activity in eukaryotic genes, where a broad spectrum of tissues and a large number of sequenced transcripts are required in order to fully characterise alternate splicing and differential expression.
DOI: 10.6084/m9.figshare.1507477.v1
title: University of Cambridge APCs 2015 (Jan-June)

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Cambridge during the first half of 2015. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/).
DOI: 10.6084/m9.figshare.22313611.v1
title: L2.3 Global Phylogenetic Tree (with bootstrap)

description: L2.3 Global Phylogenetic Tree (with bootstrap)
DOI: 10.6084/m9.figshare.25195850.v1
title: The cochlear hook region detects harmonics beyond the canonical hearing range

description: Figures of experimental data (ABR, CM, and OCT) in the paper entitled the cochlear hook region detects harmonics beyond the canonical hearing range.
DOI: 10.6084/m9.figshare.8987783.v1
title: SYNTHESIS, CHARACTERIZATION AND in vitro CYTOTOXICITY OF Acacia mearnsii PROANTHOCYANIDIN LOADED PLGA MICROPARTICLES

description: ABSTRACT One of the highlighted areas in the development of new materials is the generation of micro- and nanoparticles as drug carriers which allow the progress in formulations with the ability to release active agents in a controlled way. The proanthocyanidins (PAC) extracted from the bark of the Black Wattle have stood out for their biological activities. However, most polyflavonoids have some features which limit their application in the pharmaceutical field, such as light fastness, low bioavailability of active agents, and unpleasant taste. In this context, this study aims to present the synthesis and characterization of PAC-loaded lactic-co-glycolic acid (PLGA) microparticles obtained by the multiple emulsion method. The incorporation of PAC into PLGA was successfully achieved with PAC encapsulation efficiency around 73%. Spherical microparticles were obtained with a size distribution in the range of 0.6 to 2.4 μm. The presence of PAC modified the thermal properties of the PLGA matrix. The results of in vitro assays with Vero and T24 lineage celss showed that PLGA/PAC microparticles did not promote any effect on cell proliferation by MTT assay after 24 h. The novel Acacia mearnsii proanthocyanidin-loaded PLGA microparticles have potential for application in biological systems.
DOI: 10.17632/f4c2b4n755
title: DroneRF dataset: A dataset of drones for RF-based detection, classification, and identification

description: DroneRF dataset: a radio frequency (RF) based dataset of drones functioning in different modes, including off, on and connected, hovering, flying, and video recording. The dataset contains recordings of RF activities, composed of 227 recorded segments collected from 3 different drones, as well as recordings of background RF activities with no drones. The data has been collected by RF receivers that intercepts the drone’s communications with the flight control module. The receivers are connected to two laptops, via PCIe cables, that runs a program responsible for fetching, processing and storing the sensed RF data in a database. The dataset can be used in drone detection, drone identification and drone tracking.
DOI: 10.17632/j5gsfrbhvs
title: Data for: Structure and Ingredient-Based Biomimetic Scaffolds Combining with Autologous Bone Marrow-Derived Mesenchymal Stem Cell Sheets for Bone-Tendon Healing
DOI: 10.6084/m9.figshare.21702137.v1
title: Supplementary Material for: Persistent organic pollutant exposure and thyroid function among 12-year-old children

description: Introduction Polychlorobiphenyls (PCBs), organochlorine pesticides (OCPs) and per- and polyfluoroalkyl substances (PFASs) are persistent organic pollutants (POPs) having numerous toxicological properties, including thyroid endocrine disruption. Our aim was to assess the impact of POPs on thyroid hormones among 12-years children, while taking puberty into consideration Methods Exposure to 7 PCBs, 4 OCPs and 6 PFASs (in µg/L), and free triiodothyronine (fT3, pg/mL), free thyroxine (fT4, ng/dL) and thyroid-stimulating hormones (TSH, mIU/L) were assessed through blood-serum measurements at age 12 in 249 boys and 227 girls of the PELAGIE mother-child cohort (France). Pubertal status was clinically rated using the Tanner stages. For each POP, associations were estimated using linear regression, adjusted for potential confounders. Results Among boys, hexachlorobenzene and perfluorodecanoic acid were associated with decreased fT3 (log-scale; β (95% Confidence Interval) =-0.07 (-0.12,-0.02) and β=-0.03 (-0.06,-0.00) respectively). Intermediate levels of perfluorohexanesulfonic acid (PFHxS) and PCB180 were associated, respectively, with increased and decreased fT4. After stratification on pubertal status, PCBs and OCPs were associated with decreased TSH only in the more advanced Tanner stages (3, 4 and 5) and with decreased fT3 among early Tanner stages (1-2). Among girls, PFHxS was associated with decreased TSH (log-scale; β=-0.15 (-0.29,-0.00)), and perfluorooctanoic acid was associated with decreased fT3 (β2nd_tercile=-0.06 (-0.10,-0.03) and β3rd_tercile=-0.04 (-0.08,-0.00), vs 1st tercile). Discussion / Conclusion This cross-sectional study highlights associations between some POPs and thyroid function disruption, which appears consistent with the literature. Considering that the associations were sex-specific and moderated by pubertal status in boys, complex endocrine interactions are likely involved.
DOI: 10.6084/m9.figshare.24164154.v1
title: Plasmids for P450 engineering

description: A collection of plasmids for cytochrome P450 engineering in E. coli used in a publication: https://doi.org/10.1101/2022.12.13.520134.
DOI: 10.6084/m9.figshare.5250457.v1
title: Sinusoid Data

description: Data should be locate within subfolder named 'sinwave' within main script folder (also found within this project folder)<br>Contains function-generated pure-tone sinusoid data for analysis of the frequency-recording capabilities of the OpenBCI device (see project description for file details)
DOI: 10.17632/8tc398xgw9
title: Comparison of Effectiveness and Safety between ARNI and ACEI/ARB in HFrEF patients with moderate to severe chronic kidney disease in China

description: Exploring the efficacy and safety of under target dose of Sacubitril/valsartan (ARNI)  (Angiotensin Converting Enzyme Inhibitors/Angiotensin Receptor Blockers) in HFrEF (heart failure with reduced ejection fraction) patients with moderate to severe chronic kidney disease (CKD) in China,compared with ACEI/ARB group. 
The inverse probability of treatment weighting analysis (IPTW) was performed to compare the baseline and the clinical outcomes between the two groups.The incidence of death caused by cardiovascular disease and the rehospitalization caused by heart failure after treatments, the rate of leading to ESKD, the improvement of cardiac function (New York Heart Association) were collected after 12 months` follow up.The improvement of ejection fraction(EF), troponin N terminal of prohormone brain natriuretic peptide (NT-ProBNP), left ventricular end systolic diameter?(LVESD),left ventricular end diastolic diameter (LVEDD) were compared between baseline and follow up.The safety outcomes such as the change of potassium level and blood pressure after 12 months` follow up were also collected. 
Patients in the ARNI group showed lower rate of death caused by cardiovascular disease,lower incidence of rehospitalization.The New York Heart Association (NYHA)class function, the level of eGFR, EF and NT-ProBNP, LVEDD, LVESD got better improved in the ARNI group.the increased of blood potassium level and the decreased of blood pressure were similar between the two groups.
DOI: 10.17632/b29wyhhr3t
title: Pleistocene Subaerial and Holocene marine mud deposits on the inner continental shelf of the Sao Paulo Bight (Southeast Brazil)

description: Sedimentological data of the inner shelf of Sao Paulo
DOI: 10.6084/m9.figshare.25390759.v3
title: Source data for "Redox-neutral electrochemical decontamination of hypersaline wastewater with high technology readiness level"

description: Source data for "Redox-neutral electrochemical decontamination of hypersaline wastewater with high technology readiness level"
DOI: 10.6084/m9.figshare.28553126.v1
title: Soil data.xlsx

description: Effects of distance from (D) and size of exposed rocks (S) on surrounding plant litter and soil physico-chemical properties.
DOI: 10.6084/m9.figshare.28938377.v1
title: <b>联合国教科文组织世界遗产地气候数据集</b>

description: 该数据集包含全球联合国教科文组织世界遗产地的特定地点气候记录，提取自 ERA5 再分析和 CMIP6 气候预测。对于每个遗产地，通过将遗址的地理坐标与空间分辨率为 0.1° × 0.1° 的网格气候数据进行匹配，获得每小时的温度和湿度数据。包括三个时间段：<b>历史基线 （1961–1991）：</b>用于长期比较的基于 ERA5 的气候条件<b>当代气候（2000-2024 年）：</b>反映近期变暖趋势的 ERA5 观测<b>未来预测（2070-2100 年）：</b>根据两个共享社会经济途径（SSP1-2.6 和 SSP2-4.5）从 CMIP6 得出，代表减缓和中间情景这些数据支持对复合气候事件 （CE） 的分析和对气候相关对遗产保护威胁的评估。该数据集支持对历史、当前和合理的未来条件下的气候变化风险进行比较研究。
DOI: 10.17632/mmzb4hhptc
title: A fully-annotated imagery dataset of sublittoral benthic species in Svalbard, Arctic

description: We present visual data of bottom macrofauna filmed in sublittoral of European Arctic – Svalbard. Some of the areas (Burgerbukta, Borebukta, Dahlbrebukta, St. Johnsfjorden, Trygghamna) are in the vicinity of melting glaciers, others are in ice-free areas (Adriabukta, Eidembukta, Gipsvika). The dataset consists of three types of data: video samples, 2D mosaics and annotations of objects found. In total, 22 min 51 s of video footage was collected and split into 10-30 s segments, resulting in 47 video samples. he labels of samples indicate site, transect, a part of raw video from which video sample was cropped and duration of video sample. E.g., file named B1_0332_30s.bmp, where B stands for Borebukta bay (AD – Adriabukta, B – Borebukta, D - Dahlbrebukta, E - Eidembukta, G - Gipsvika, HB - Burgerbukta, SJ - St. Johnsfjorden, T - Trygghamna), 1 – transect number, 0332 – 3 min 32 s start time from a raw video, 30s – length of video sample from which this mosaic file was made. All video samples were converted into still images (video mosaics), that were manually analysed by marine biologists - specialists in Arctic biota, who identified visible biological objects at the lowest possible taxonomic level. Twelve taxons were targeted for annotation: brown alga – kelp Laminaria, spider crab Hyas sp., brittlestars Ophiuroidea, burrowing anemone Halcampa sp., sea squirts Tunicata, tube anemone Ceriantharia sp., sea star Urasterias lincki, tube dwelling Polychaeta, snailfishes Liparidae, flatfishes Pleuronectiformes, Shrimps, and benthic trachymedusa Ptychogastria polaris. Annotation process, where 4 experts performed manual pixel-wise segmentation (with Labelbox tool) and mask refinement survey (on SurveyJS platform), resulted in 2242 annotated objects with the most popular category – Ophiuroidea. Dataset consists of three directories: video samples (3-5 fps, .AVI format), video mosaics (.JPG format) and annotated categories with/without background (.PNG format). 47 video samples and 47 resulting 2D mosaics with corresponding annotations (masks and mask overlays) for 2242 objects in 12 categories. Geographic information. The following bays of Svalbard archipelago: Adriabukta (77.000100, 16.192216), Burgerbukta (77.057108, 16.007882), Borebukta (78.38859, 14.28120), Dahlbrebukta (78.566666, 12.368533), Eidembukta (78.360133, 12.779950), Gipsvika (78.42591, 16.52873), St. Johnsfjord (78.506766, 12.931066), Trygghamna (78.254050, 13.761500) .
DOI: 10.6084/m9.figshare.22593298.v4
title: Multi-user activity recognition database (First part)

description: First part of the data repository related to the publication "Towards Multi-User Activity Recognition through Facilitated Training Data and Deep Learning for Human-Robot Collaboration Applications". The remaining part of the dataset is present at another repository with the same name on Figshare.The data is composed by .csv files with the datastream from the Azure Kinect camera used in the experiment. The files starting with "s##_a##" have 3 columns each, referring to the spatial coordinates of the body frames. In the file name, "s##" identifies the subject, "a##" the activity (01: working, 02: requesting, 03: preparing), "t##" the task (not used for this work) and "r##" the repetition.If you are interested in the raw rosbag2 files, please contact the developer Francesco Semeraro at francesco.semeraro@manchester.ac.uk
DOI: 10.6084/m9.figshare.22787633.v1
title: Amino-acids and Chla concentrations

description: This dataset contains the concentrations of Chlorophyll a and Amino-acids in lake Zurich from May, July and October 2018
DOI: 10.6084/m9.figshare.26548378.v1
title: Resultados Encuesta Laboral de Antropología y Arqueología en Colombia (2024)

description: ESP: Esta bases de datos cuenta con el total de las respuestas recibidas en el marco de la encuesta laboral de antropología y arqueología en Colombia, realizada durante el primer semestre del 2024 por el grupo de interés Profesionalización y contextos laborales de los y las antropólogas en Colombia de la ACANT, Antropolab y otros expertos en temas laborales y de profesionalización.ENG: This database contains all the answers received in the framework of the labor survey on anthropology and archaeology in Colombia, carried out during the first semester of 2024 by the interest group Professionalization and labor contexts of anthropologists in Colombia of ACANT, Antropolab and other experts on labor and professionalization
DOI: 10.6084/m9.figshare.6469547.v1
title: Value of peripheral blood count for dengue severity prediction.

description: <b>Additional File 1</b> <b>Fig 1</b>: Discriminatory function of day 3 platelet count and haemoglobin concentration in predicting progression into dengue haemorrhagic fever among female dengue patients. <i>Area under the curve was 0.71 for platelets and 0.50 for haemoglobin. A cut off value with high sensitivity and specificity to predict DHF could be obtained from our sample<b>.</b></i> <b>Additional File 2</b> <b>Fig 2:</b> Discriminatory function of day 3 platelet count and haemoglobin concentration in predicting progression into dengue haemorrhagic fever among male dengue patients <i>Area under the curve was 0.70 for platelets and 0.40 for haemoglobin. A cut off value with high sensitivity and specificity to predict DHF could be obtained from our sample.</i>
DOI: 10.4225/49/5959d3d9b5d38
title: Neisseria gonorrhoeae SAMN04875541 reads

description: This is a sample read set for use in Unicycler. It is linked to in the Unicycler README so people who install Unicycler can get a small read set to make sure the program works.<br>The files contain Illumina and PacBio reads from <i>Neisseria gonorrhoeae</i> biosample SAMN04875541. The SRA run accessions are SRR4272052 and SRR4272053. These files do not contain the full set of reads from these run. Rather, they have been subsampled down to create smaller files, easier to download. The PacBio reads were subsampled based on quality and are a high-quality subset of the original reads.<br>While the <i>Neisseria gonorrhoeae</i> genome is small, it is a difficult one to assemble, with many copies of IS<i>1016</i>, IS<i>Ngo2</i> and other repeats.
DOI: 10.6084/m9.figshare.29052149.v1
title: Supplementary Tables 1 & 2

description: List of RT-PCR primers (Table S1) and antibodies used in the manuscript (Table S2)
DOI: 10.6084/m9.figshare.29109668.v1
title: Interview Umar.docx

description: In-depth interview transcription
DOI: 10.17632/hhy82g7chj
title: Support for nuclear energy development in Germany and Poland

description: Data for the article:
Support for nuclear power and proenvironmental attitudes: The cases of Germany and Poland.

Article abstract:
Europe's energy system faces significant challenges in reducing its dependence on imports and decarbonising itself. In this context, a resurgence of discussion has occurred in recent years about the future role of nuclear power, which currently supplies one-quarter of the European Union’s electricity. Key obstacles that limit the development of this technology are low public support and the perception that this type of energy is particularly harmful to the environment. 
We investigate the relationship between support for the development of nuclear power and environmental values, knowledge, cognitive abilities, and assessment of the effectiveness of mitigation measures using data from random-quota surveys in Germany (n=933) and Poland (n=878). Using a logistic regression model, we demonstrate that support for nuclear power is significantly higher in Poland than in Germany, and that—contrary to the results of previous studies—in Poland, support for nuclear power relates less negatively to environmental values. It also relates positively to the degree of public knowledge—both about nuclear energy and the causes of climate change. Our findings contribute to understanding of the mechanisms that shape attitudes towards nuclear power and to assessing its potential for public support in the European Union. 

Study highlights:
1. Support for nuclear power is twice as high in Poland as in Germany.
2. No fixed link exists between environmental attitudes and support for nuclear power.
3. Negative views of nuclear power coincide with low knowledge of the causes of climate change.
4. Those who lack knowledge of climate change hold the most varied attitudes towards nuclear energy. 
5. In Poland, those who understand the causes of climate change demonstrate both environmental values and high support for nuclear power.

Information about a dataset:
The data was collected as part of the original survey, conducted in June 2019, using random stratified samples in Germany and Poland. The participants were adults (18–55 years old), with at least a secondary education. These sample selection criteria were imposed to reduce potential difficulties with computer use among older people or with understanding the questions among those who lack secondary education.

Hypothesis that were verified using the dataset:
H1. Pro-environmental and pro-climate attitudes are paired with low support for nuclear energy.
H2. In Poland, pro-environmental and pro-climate attitudes have less of a negative impact on support for nuclear energy development than in Germany.
H3. Knowledge about nuclear power and the causes of climate change is linked to greater support for the development of nuclear power.
DOI: 10.6084/m9.figshare.1597719.v1
title: Improving the Network Scale-Up Estimator: Incorporating Means of Sums, Recursive Back Estimation, and Sampling Weights Data File

description: In the spring of 2014 the Nebraska Community Survey was sent to a random sample of 2,000 households in Nebraska. The sample was obtained from the United States Postal Service delivery sequence file (DSF) through the Bureau of Sociological Research at the University of Nebraska-Lincoln. Seasonal and vacant households were removed from the sample by the provider. The DSF covers approximately 97 percent of U.S. Households and provides a reasonable frame for the Nebraska population. The Institutional Review Board at the University of Nebraska-Lincoln approved the research protocol and granted the project an exempt status (IRB# 20140314288 EX). Each household in the sample was sent a packet which included a letter introducing the survey, a one dollar incentive, a copy of the survey questionnaire, and a pre-paid return envelope. The person in the household to take the survey was selected using the next-birthday method, a quasi-probability selection design. Eligible respondents had to be at least 19 years old, the age of majority in Nebraska, and be the next person in the household to have a birthday after April 14, 2014. A week after the initial mailing a reminder postcard was sent to any households that had not responded to the initial mailing. Three weeks later, a second survey packet was sent to non-responding households. If at any time a respondent asked to be removed from the address list all further mailings were stopped. After the third mailing data was collected for approximately another six weeks, allowing respondents ample time to complete and return their survey. More information can be found in the complete publication.
DOI: 10.6084/m9.figshare.19085880.v1
title: Direct feature extraction from two-dimensional X-ray diffraction images of semiconductor thin films for fabrication analysis

description: We built a workflow for the fabrication analysis of thin films by applying machine-learning (ML) techniques directly to the measurement data. This will lower the problem in cost of synthesizing and analyzing samples to improve the fabrication conditions. The workflow combines two ML techniques: non-negative matrix factorization (NMF) and variational autoencoder (VAE). The measurement data were two-dimensional X-ray diffraction of indium-gallium oxide system thin films. The thin films were fabricated by physical vapor techniques under multiple conditions. First, the workflow was applied to the data of the thin films fabricated through pulsed laser deposition as a proof of concept. We found that our workflow extracted features that represented crystallinity differences in addition to substrate differences. Second, VAE was analyzed to determine whether it could generate new data from its latent space. The latent space of the VAE, which learned the extracted features, represented the relationship between the fabrication conditions such as laser intensities and crystallinity. Third, the inference ability of the new data fabricated through sputtering was evaluated. The capability of the workflow we confirmed will support researchers in improving fabrication conditions by visually comparing various fabricated samples.
DOI: 10.6084/m9.figshare.28477913.v4
title: ChinaCP-Wheat10m

description: ChinaCP-Wheat10m: 10-m national-scale wheat Cropping Patterns distribution map in China