cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/g6ngsz/al1j0c
title: 20190503_18-058_129_lait_3_1b.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 3. Technical replicate 4.
DOI: 10.15454/g6ngsz/b8jure
title: 20190503_18-058_129_soja_3_1.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 3. Technical replicate 1.
DOI: 10.15454/g6ngsz/cdsjpl
title: 20190503_18-058_129_soja_2_3.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 2. Technical replicate 3.
DOI: 10.15454/g6ngsz/cyhiau
title: 20190419_18-058_129_lait_2_2.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 2. Technical replicate 2
DOI: 10.15454/g6ngsz/g8vz9d
title: 20190503_18-058_129_lait_4_2.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 4. Technical replicate 2.
DOI: 10.15454/g6ngsz/gw9xhj
title: 20190503_18-058_129_soja_3_2.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 3. Technical replicate 2.
DOI: 10.15454/g6ngsz/h8eq82
title: 20190419_18-058_129_lait_2_3.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 2. Technical replicate 3
DOI: 10.15454/g6ngsz/iohijp
title: 20190503_18-058_129_lait_3_2.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 3. Technical replicate 2.
DOI: 10.15454/g6ngsz/ivn1pg
title: 20190503_18-058_129_soja_2_2.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 2. Technical replicate 2.
DOI: 10.15454/g6ngsz/ms8l9s
title: 20190503_18-058_129_lait_3_3.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 3. Technical replicate 3.
DOI: 10.15454/g6ngsz/n8cxs3
title: 20190503_18-058_129_soja_2_1.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 2. Technical replicate 1.
DOI: 10.15454/g6ngsz/pzfxxc
title: 20190503_18-058_129_soja_4_2.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 4. Technical replicate 2.
DOI: 10.15454/g6ngsz/tr4m2d
title: 20190503_18-058_129_soja_4_1.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 4. Technical replicate 1.
DOI: 10.15454/g6ngsz/um0sru
title: 20190503_18-058_129_lait_4_3.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 4. Technical replicate 3.
DOI: 10.15454/g6ngsz/w07agv
title: 20190419_18-058_129_lait_2_1.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Cow milk ultrafiltrate. Biological replicate 2. Technical replicate 1
DOI: 10.15454/g6ngsz/ybyv9g
title: 20190503_18-058_129_soja_4_3.mzXML

description: Propionibacterium freundenreichii CIRM-BIA 129. Stationary phase. Soymilk ultrafiltrate. Biological replicate 4. Technical replicate 3.
DOI: 10.15454/gaheu0/hxihb6
title: 1_Table_Description_InbredLine_354I.tab

description: This table (354 rows x 10 columns) describes the 354 accessions genotyped by three technologies in genotyping matrix. 10 columns indicates variety name (Variety_ID), accession name (Accession_ID), breeder that obtained inbred lines (Breeder), institution that provided initial seedlot (seeds provider), contact to order accession, lines included in panel Drops (Panel_Drops), Genotyping identifiers for 50K (Genotyping_ID_50K), 600K (Genotyping_ID_600K), GBS (Genotyping_ID_GBS) and kaspar markers ( Genotyping_ID_BGA). "NA" indicates missing data. Variety_ID is the identifier used in genotyping data matrix
DOI: 10.15454/gaheu0/oomkez
title: 3_Genotyping_AmaizingDentPublic_ImputedBeagle_354I_978134L.tsv

description: Genotyping matrix with inbred lines in row and markers in columns (354 rows x 978,135 columns). The first columns indicates the variety name. The header of genotyping matrix indicates names of markers. Genotyping data matrix were coded in allelic dose (0,1,2) and all markers is bi-allelic. Correspondences between genotypes 0 and 2 (homozygous genotypes) and nucleotides of single nucleotide polymorphisms (SNP) or insertion/deletion were provided in "2_Table_Locus_AmaizingDentePublic_978134L.tsv". Missing data were imputed after assembling four sub-matrices genotyping matrix from 50K, 600K, GBS and kaspar markers using Beagle V3.3.2 (Browning and Browning, 2007, Am J Hum Genet 81:210-223). Duplicated loci were removed based on their physical position considering the technologies providing the least missing data for this loci (600K then 50K then GBS).
DOI: 10.15454/gaheu0/z4ro9x
title: 2_Table_Locus_AmaizingDentePublic_978134L.tab

description: This table (978,134 rows x 8 columns) describes the 973,134 loci genotyped by one of three technologies on 354 accessions. Columns indicates the name of SNP (SNP.name), position of each loci on chromosome (Chromosome) and along each chromosomes in base pairs (Position) according to B73 RefGenV2 assembly (AGPv2), technology used to genotype these loci (Origin_SNP), an identifiant of loci (ID_Locus), genotypes corresponding to 0 (Allele0) and 2 (Allele2) according to IUPAC codes in genotyping matrix (A,T,G,C,+,- for genotype homozygous for allele A, T, G, C, insertion, deletion), genotypes of B73 accession in genotyping matrix (Allele B73). Original genotypes in genotyping matrix (A,T,G,C,+,-) were obtained by exporting genotyping data (i) from Tassel-GBS software for GBS using AllZeaGBSv2.7 database for calling (Glaubitz et al., 2014, PLoS ONE 9), (ii) from Axiom Genotyping Console and SNP polisher in "forward" format for 600K Affymetrix Axiom arrays (Unterseer et al., 2014, BMC Genomics, 15,15), and (iii) from Genome studio using official clustering in "forward" format for Illumina infinium HD arrays (Ganal et al., 2011, PLoS ONE 6(12): e28334).
DOI: 10.15454/ganj7j/fy3k0e
title: 2_Train_set_24pools_TF_1000SNP.tab

description: Training set of 1,000 SNPs and 24 controlled pools used to predict allelic frequencies for polymorphic SNPs using a common logistic regression after testing for fixation of alleles. Table have 4 columns with the following headers: "SNP.Name","Sample.ID","RatioObs","Attendu". These columns correspond to the name of the SNP, name of the sample, Fluorescent Intensity Ratio for B allele, expected allelic frequency for B allele. Fluorescent Intensity Ratio for B allele was calculated with the following formula: Y/(X+Y) where X and Y are fluorescent intensities for A and B alleles, respectively. Expected allelic frequencies in controlled pools were estimated from the weights of three parental lines constituting the mix and the genotypes of those three parental lines.
DOI: 10.15454/ganj7j/llf47i
title: 5_PipelinePredictionDNABulk_MethPubli_inrae.R

description: - R scripts (Pipeline) that apply R functions (04_Function_PredAllFreqInDNABulk_Publi.R) to two training datasets corresponding to fluorescence intensity data of 327 lines (1_Train_set_327lines_32788SNP.tsv ) and two series of controlled pools (2_Train_set_24pools_TF_1000SNP.tab), in order to predict allelic frequencies using a two-step approach in DNA bulks of 10 duplicated landraces.(3_FIR_10DuplicatedLandraces_32788SNPs.tab). - Allelic frequencies in new DNA bulks of maize populations genotyped with 50K Illumina array could be easily calculated by replacing the "3_FIR_10DuplicatedLandraces_32788SNPs.tab" dataset by your own fluorescent dataset of populations genotyped with 50K maize Illumina array, providing that the column names of your dataset and SNP names are identical.
DOI: 10.15454/ganj7j/v7rz15
title: 3_FIR_10DuplicatedLandraces_32788SNPs.tab

description: Fluorescence Intensity Ratios for 32,788 SNPs on 20 samples corresponding to 10 duplicated landraces. This table has 5 columns with headers as follows: "SNP.Name","Sample.name","X","Y", "RatioObs". These columns correspond to name of SNP, name of sample, fluorescence intensity of A allele, fluorescence intensity of B allele, fluorescence intensity ratio (FIR) for B allele, respectively. FIR was calculated according to the following formula: Y/(X+Y)
DOI: 10.15454/ganj7j/vozdqn
title: 4_Function_PredAllFreqInDNABulk_Publi.R

description: Functions to predict allelic frequencies using a two-step approache and to visualize prediction: Test of allele fixation, then logistic regression for polymorphic SNPs.
DOI: 10.15454/ganj7j/vwf3ul
title: 1_Train_set_327lines_32788SNP.tsv

description: Training set with fluorescence intensity ratios (FIR) for 327 inbred lines on 32,788 prefixed PZE SNPs from 50K maize Illumina Array, used to test allele fixation in DNA bulks of landraces. Table display 5 columns: "ID.Genotypage", "SNP.Name",""Cas"","Attendu","RatioObs" These 5 columns correspond to sample name, SNP name, genotype produced by Genome Studio software, expected allelic frequency for B allele, fluorescence intensity ratio observed for B allele calculated according to the following formula : Y/(X+Y), where Y and X are fluorescence intensities for B and A alleles respectively. 327 lines were a subset of 337 lines of a diversity panel covering worldwide diversity (Bouchet et al., 2013).
DOI: 10.15454/gcon7e/jiaaa6
title: Otu_enterotypes.fasta

description: OTU_sequences
DOI: 10.15454/gcon7e/kpjyl5
title: mathilde_enterotypes_table.tab

description: OTU_table
DOI: 10.15454/gcyurm/1tepz0
title: LEARN_Bioinformatic_Scripts_v2.pdf

description: Bioinformatic scripts used to analyse the metabarcoding datasets
DOI: 10.15454/gcyurm/5smzob
title: tableviz-1.qzv

description: Interactive summary of the ASV table corresponding to the leaf dataset
DOI: 10.15454/gcyurm/ad9itk
title: filtered_dataset_ps.RData

description: Filtered ASV table in the R phyloseq format (contains the ASV table, the taxonomic assignments and the metadata)
DOI: 10.15454/gcyurm/dtdrel
title: filtered_dataset_qiime.qza

description: Filtered ASV table in the QIIME2 format (contains the ASV table, the taxonomic assignments and the metadata)
DOI: 10.15454/gcyurm/fy67na
title: rep-seqs-merged.qza

description: Representative sequences for the merged ASV table
DOI: 10.15454/gcyurm/g0t54u
title: taxa-bar-plots-filtered.qzv

description: Interactive taxonomic barplot for the filtered ASV table
DOI: 10.15454/gcyurm/gs8c5o
title: sequences-2.qza

description: Raw MiSeq sequences for the source dataset
DOI: 10.15454/gcyurm/gwi7gu
title: sample-metadata-2.tab

description: Metadata file for the source dataset
DOI: 10.15454/gcyurm/lgkwfx
title: filtered_dataset_qiime.qzv

description: Interactive summary of the filtered ASV table
DOI: 10.15454/gcyurm/mj0bwk
title: taxonomy-vsearch-top-hit.qzv

description: Interactive summary of the ASV taxonomic assignments performed with Vsearch
DOI: 10.15454/gcyurm/mq7okn
title: tabulated-sample-metadata-1.qzv

description: Interactive metadata file for the leaf dataset
DOI: 10.15454/gcyurm/nzdcxo
title: taxonomy.qza

description: ASV taxonomic assignments performed with the naïve Bayes classifier
DOI: 10.15454/gcyurm/o2d1cr
title: table-merged-viz.qzv

description: Interactive summary of the merged ASV table
DOI: 10.15454/gcyurm/o46xjd
title: taxonomy-vsearch-top-hit.qza

description: ASV taxonomic assignments performed with Vsearch
DOI: 10.15454/gcyurm/oilfho
title: tableviz-2.qzv

description: Interactive summary of the ASV table for the source dataset
DOI: 10.15454/gcyurm/q4dbii
title: sequences-1.qza

description: Raw MiSeq sequences for the leaf dataset
DOI: 10.15454/gcyurm/rv0qsi
title: table-merged.qza

description: Merged ASV table (for both the leaf and source dataset)
DOI: 10.15454/gcyurm/uyg3ue
title: sample-metadata-1.tab

description: Metadata file for the leaf dataset
DOI: 10.15454/gcyurm/vmbsgo
title: taxonomy.qzv

description: Interactive summary of the ASV taxonomic assignments performed with the naïve Bayes classifier
DOI: 10.15454/gcyurm/vqwm1o
title: tabulated-sample-metadata-2.qzv

description: Interactive metadata file for the source dataset
DOI: 10.15454/gcyurm/xlduej
title: taxa-bar-plots.qzv

description: Interactive taxonomic barplot with all samples (before filtration)
DOI: 10.15454/gcyurm/yapmb9
title: sequences-1.qzv

description: Interactive summary of the raw MiSeq dataset (leaf)
DOI: 10.15454/gcyurm/ytt4sb
title: LEARN_decontam.Rmd

description: R script used to filter the ASV table
DOI: 10.15454/gdldbh/algra9
title: Villain et al 2020b_data_acoustics_IsoReu Test_postacp.txt

description: :unav
DOI: 10.15454/gdldbh/hvvsgs
title: Villain et al 2020b_data_IsoReuTest.txt

description: :unav
DOI: 10.15454/gdldbh/vbmcxb
title: VIllain et al 2020b_data_choiceTest.txt

description: :unav
DOI: 10.15454/gec9xx/49gypz
title: typo_vm.tab

description: :unav
DOI: 10.15454/gec9xx/6yqy3a
title: GUERAUT_PIGUET_E&S_Annexe_en_ligne.pdf

description: :unav
DOI: 10.15454/gec9xx/bu8gzb
title: GUERAUT_PIGUET_E&S_Dictionnaire_des_variables.pdf

description: :unav
DOI: 10.15454/gec9xx/cj5gwi
title: typo_vm.sas7bdat

description: :unav
DOI: 10.15454/gec9xx/nfysju
title: GUERAUT_PIGUET_E&S_Dictionnaire_des_variables.pdf

description: :unav
DOI: 10.15454/gec9xx/vyvbgr
title: GUERAUT_PIGUET_E&S_Annexe_en_ligne.pdf

description: :unav
DOI: 10.15454/gerb6u/7hik4u
title: rpg_complete_2018_d40.zip

description: :unav
DOI: 10.15454/gjg5w5/smwneu
title: rpg_complete_2019_d22.zip

description: :unav
DOI: 10.15454/gjgiah/3zalht
title: FRENCH_PHYTOPLANKTON_TRAITS.csv

description: Dataset of the French phytoplankton traits
DOI: 10.15454/gjgiah/mnljym
title: Laplace-Treyture et al. - 2021 - Data paper Phytoplankton morpho-functional trait dataset-SciData.pdf

description: Corresponding Data Paper on Scientific Data. Laplace-Treyture, C., Derot, J., Prévost, E. et al. Phytoplankton morpho-functional trait dataset from French water-bodies. Sci Data 8, 40 (2021). https://doi.org/10.1038/s41597-021-00814-0
DOI: 10.15454/glauqa/d41axz
title: ajout_jeu_de_donnees.png

description: logigramme indiquant la marche à suivre pour ajouter un jeu de données dans un entrepôt de données institutionnel (CIRAD, IRD, INRAE)
DOI: 10.15454/glauqa/xleg7w
title: creation_jeu_de_donnees.pdf

description: Documentation utilisateur pour déposer un jeu d edonnées dans un entrepôt institutionnel
DOI: 10.15454/gmrgpo/owq3jf
title: Migrate_2012Raisins-4loci

description: File containing microsatellite genotypes of Saccharomyces cerevisiae isolated from grapes in different appellation of the Bordeaux area. This file has been used for migration inference between different regions with Migrate 4.2.14. Pop 1 = Medoc (38 genotypes), Pop 2= Pessac Leognan (89 genotypes), Pop 3= Saint-Emilion (7genotypes) and Pop 4 = Entre deux-Mers (5 genotypes)
DOI: 10.15454/gmrgpo/wgfuo3
title: DTrandommigrate.txt

description: File containing microsatellite genotypes of Saccharomyces cerevisiae isolated from grapes or cellars in the Bordeaux area. This file has been used for evaluation of exchanges between cellars and vineyards with Migrate 4.2.14.
DOI: 10.15454/gmrgpo/x1iyd3
title: Raisinsseuls-2012-13ssLR.mss

description: File containing microsatellite genotypes of Saccharomyces cerevisiae isolated from grapes in different appellation of the Bordeaux area. File used for demographic inference scenario with DIYABC. Pop 1 = Medoc (61 individuals), Pop 2 = Pessac Léognan (164 individuals), Pop 3 = Saint Emilion (71 individuals), Pop 4 = Bergerac (11 individuals)
DOI: 10.15454/gmwb8q/jirpzm
title: Plastic with plastic film consumers' arguments_13_12_19.owl

description: Data associated to the table in owl format
DOI: 10.15454/gmwb8q/kpmj1s
title: Plastic with plastic film consumers' arguments_17_04_20.csv

description: Data associated to the table in csv format
DOI: 10.15454/gmwb8q/tqrmrc
title: Plastic with plastic film consumers' arguments_13_12_19.csv

description: Data associated to the table in csv format
DOI: 10.15454/gnbufh/jatt4a
title: Consumers' answers to poll for Wood packaging _13_12_19.owl

description: Data associated to the table in owl format
DOI: 10.15454/gnbufh/qecz5n
title: Consumers' answers to poll for Wood packaging _13_12_19.csv

description: Data associated to the table in csv format
DOI: 10.15454/gnbufh/qu8ywy
title: Consumers' answers to poll for Wood packaging _17_04_20.csv

description: Data associated to the table in csv format
DOI: 10.15454/gr5efs/6ju2ko
title: datafile_1T_manual_annotation.tab

description: Twitter data manually annotated from corpus 1
DOI: 10.15454/gr5efs/avlea3
title: datafile_2Y_automatic_annotation.tab

description: YouTube transcription data automatically annotated from corpus 2
DOI: 10.15454/gr5efs/brbaly
title: datafile_1T_manual_annotation.xlsx

description: :unav
DOI: 10.15454/gr5efs/ch44zv
title: datafile_3T_automatic_annotation.tab

description: :unav
DOI: 10.15454/gr5efs/cnada4
title: datafile_1Y_manual_annotation.xlsx

description: :unav
DOI: 10.15454/gr5efs/hpd6tf
title: datafile_1Y_manual_annotation.tab

description: YouTube transcription data manually annotated from corpus 1
DOI: 10.15454/gr5efs/kvy2ck
title: datafile_3Y_automatic_annotation.tab

description: YouTube transcription data automatically annotated from corpus 3
DOI: 10.15454/gr5efs/lkcric
title: datafile_2T_automatic_annotation.tab

description: Twitter data automatically annotated from corpus 2
DOI: 10.15454/gr5efs/lofbyl
title: annotation_guide_spatial_thematic_entities.pdf

description: The annotation guide for spacial and thematic entities
DOI: 10.15454/gr5efs/wlosob
title: datafile_2Y_automatic_annotation.xlsx

description: :unav
DOI: 10.15454/gr5efs/y6k7ex
title: datafile_2T_automatic_annotation.xlsx

description: :unav
DOI: 10.15454/gr5efs/zd4dqi
title: datafile_3Y_automatic_annotation.tab

description: :unav
DOI: 10.17632/3932bwnyz4.1
title: Risk factors for aggravated angiographic outcomes in Takayasu arteritis: a multi-center study of 235 patients- 2020.05.02

description: The vascular aggravation in Takayasu arteritis. The information of patients were deleted, and the file could be open with SPSS software.
DOI: 10.17632/8hv5grr49s.4
title: ACI FRP databases - Machine learning assessment of frp-strengthened and reinforced concrete members

description: ACI FRP databases - a database to accompany, "Machine learning assessment of frp-strengthened and reinforced concrete members"
DOI: 10.17632/9f2j8hybxj.1
title: Mendeley supplemental figure 1

description: Randomization and follow-up of the patients. 
Nineteen patients with 112 alopecic patches were recruited at the beginning, 3 patients with 13 patches lost to follow-up, while 16 patients with 99 alopecic patches completed the trial.
DOI: 10.17632/z8c4mrrbrf.1
title: Covid-19 EMV and return of stock markets relationship

description: Relationship between EMV-ID (Infectious Disease Equity Market Volatility Tracker) and return of stock markets which belong the highest number of Covid-19 cases and deaths.
DOI: 10.17632/52rbsgb6by.1
title: JAZF1-SUZ12 dysregulates PRC2 function and gene expression during cell differentiation

description: Polycomb repressive complex 2 (PRC2) methylates histone H3 lysine 27 (H3K27me3) to maintain gene repression and is essential for cell differentiation. In low-grade endometrial stromal sarcoma (LG-ESS), the PRC2 subunit SUZ12 is often fused with the NuA4/TIP60 subunit JAZF1. We show that JAZF1-SUZ12 dysregulates PRC2 composition, genome occupancy, histone modification, gene expression and cell differentiation. Loss of the SUZ12 N-terminus in the fusion protein abrogated interaction with specific PRC2 accessory factors, reduced occupancy at PRC2 target genes, and diminished H3K27me3. Fusion to JAZF1 increased H4Kac at PRC2 target genes and triggered recruitment to JAZF1 binding sites during cell differentiation. In human endometrial stromal cells, JAZF1-SUZ12 upregulated PRC2 target genes normally activated during decidualization while repressing genes associated with immune clearance, and JAZF1-SUZ12-induced genes were also overexpressed in LG-ESS. These results reveal defects in chromatin regulation, gene expression and cell differentiation caused by JAZF1-SUZ12, which may underlie its role in oncogenesis.
DOI: 10.17632/gspw8w9wt6.2
title: Neonatal dairy calf gut microbiota-derived ursodeoxycholic acid improves intestinal homeostasis and colitis to attenuate extended-spectrum β-lactamase producing enteroaggregative Escherichia coli infection

description: Metabolomics preprocessed data, the data set is related to figure 2, Extended Data figure S3.
DOI: 10.15454/gtaoww/rtfay7
title: rpg_complete_2019_d40.zip

description: :unav
DOI: 10.15454/gujbzb/0idp6d
title: Submit_Synteny_Rosaceae_V1.xlsx

description: Submission file of Rosaceae botanic family (9 proto-chromosomes) in PlantSyntenyViewer
DOI: 10.15454/gwdpin/b0amep
title: LIB2_CATAATAC-CGTTAGAA-AH2C7TDRXY_L001_R2.fastq.gz

description: MLRSV LC1210G
DOI: 10.15454/gwdpin/p9jaxz
title: LIB3_GATCTATC-AGCCTCAT-AH2C7TDRXY_L001_R1.fastq.gz

description: ALRV LC128A
DOI: 10.15454/gwdpin/pvgmjo
title: LIB1_TGCGGCGT-TACCGAGG-AH2C7TDRXY_L001_R1.fastq.gz

description: StPV LC1220I
DOI: 10.15454/gwdpin/rzmv4q
title: LIB3_GATCTATC-AGCCTCAT-AH2C7TDRXY_L001_R2.fastq.gz

description: ALRV LC128A
DOI: 10.15454/gwdpin/tinip2
title: LIB2_CATAATAC-CGTTAGAA-AH2C7TDRXY_L001_R1.fastq.gz

description: MLRSV LC1210G
DOI: 10.15454/gwdpin/xna5ux
title: LIB1_TGCGGCGT-TACCGAGG-AH2C7TDRXY_L001_R2.fastq.gz

description: StPV LC1220I
DOI: 10.15454/gwkrky/0l7qpm
title: Snakemake_Config_SNP4OrphanSpecies.yaml

description: File of configuration for running the pipeline with the target species
DOI: 10.15454/gwkrky/6cx87y
title: Snakemake_Pipeline_SNP4OrphanSpecies.smk

description: Script for running the pipeline
DOI: 10.15454/gwkrky/dteie3
title: ForBuildingContainer.tar.xz

description: All the scripts of the workflow analysis and for building the container
DOI: 10.15454/gwkrky/fbbgkc
title: Nematoda.tar.xz

description: Pools of primers obtained for Bursaphelenchus xylophilus
DOI: 10.15454/gwkrky/fmewln
title: 01_HOMEDNoticePipeline_Vers20210920.odt

description: Notice for using the pipeline
DOI: 10.15454/gwkrky/kq30ve
title: container_SNP4OrphanSpecies.sif

description: Container of the pipeline
DOI: 10.15454/gwkrky/nfuvki
title: Oidium.tar.xz

description: Pools of primers obtained for Erysiphe alphitoides
DOI: 10.15454/gwkrky/oig4kq
title: Diplodia.tar.xz

description: Genomic data and all the results obtained by the pipeline for Diplodia sapinea
DOI: 10.15454/gwkrky/phlyxy
title: Thaumetopoea.tar.xz

description: Pools of primers obtained for Thaumetopoea pityocampa
DOI: 10.15454/gwkrky/r22bgc
title: RunningOnCluster_Files.tar.xz

description: Scripts for running the pipeline on a cluster
DOI: 10.15454/gwkrky/zmnf3c
title: Armilaria.tar.xz

description: :unav
DOI: 10.15454/gwl0gp/25x8m5
title: Albula_goreensis.AGOR1.0.CDS.fa.gz

description: Fasta format of the annotated CDS features.
DOI: 10.15454/gwl0gp/2fiani
title: Gymnothorax_javanicus.GJAV1.1.cds.fa.gz

description: Fasta format of the annotated CDS features.
DOI: 10.15454/gwl0gp/3evkmr
title: Synaphobranchus_kaupii.SKAU1.1.proteins.fa.gz

description: Fasta format of the annotated protein products.
DOI: 10.15454/gwl0gp/4aljao
title: Anguilla_anguilla.AANG1.1.gff3.gz

description: Annotation of the genomic sequences in Generic Feature Format Version 3 (GFF3).
DOI: 10.15454/gwl0gp/4ubhkp
title: Conger_conger.CCON1.1.transcripts.fa.gz

description: Fasta format of the annotated transcript models.
DOI: 10.15454/gwl0gp/7i2ibs
title: Anguilla_anguilla.AANG1.1.proteins.fa.gz

description: Fasta format of the annotated protein products.
DOI: 10.15454/gwl0gp/9tqwhj
title: Hiodon_alosoides.HALO1.0.transcripts.fa.gz

description: Fasta format of the annotated transcript models.