cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8971091
title: Stable contacts of naïve CD4 T cells with migratory dendritic cells are ICAM-1-dependent but dispensable for proliferation in vivo

description: It is unclear if naïve T cells require dendritic cell ICAMs to proliferate inside lymph nodes. To check if and when CD4 lymphocytes use ICAMs on migratory DCs, wild-type and ICAM-1 and 2 double knock out bone marrow-derived DCs pulsed with saturating levels of an OT-II transgene-specific ovalbumin-derived peptide were co-transferred into skin-draining lymph nodes. Intravital imaging of OT-II lymphocytes entering these lymph nodes revealed that ICAM-1 and −2 deficient migratory DCs formed fewer stable conjugates with OT-II lymphocytes but promoted normal T cell proliferation. DC ICAMs were also not required for unstable TCR-dependent lymphocyte arrests on antigen presenting migratory DCs. Thus, rare antigen-stimulated ICAM-stabilized T-DC conjugates are dispensable for CD4 lymphocyte proliferation inside lymph nodes.
DOI: 10.6084/m9.figshare.8971091.v1
title: Stable contacts of naïve CD4 T cells with migratory dendritic cells are ICAM-1-dependent but dispensable for proliferation in vivo

description: It is unclear if naïve T cells require dendritic cell ICAMs to proliferate inside lymph nodes. To check if and when CD4 lymphocytes use ICAMs on migratory DCs, wild-type and ICAM-1 and 2 double knock out bone marrow-derived DCs pulsed with saturating levels of an OT-II transgene-specific ovalbumin-derived peptide were co-transferred into skin-draining lymph nodes. Intravital imaging of OT-II lymphocytes entering these lymph nodes revealed that ICAM-1 and −2 deficient migratory DCs formed fewer stable conjugates with OT-II lymphocytes but promoted normal T cell proliferation. DC ICAMs were also not required for unstable TCR-dependent lymphocyte arrests on antigen presenting migratory DCs. Thus, rare antigen-stimulated ICAM-stabilized T-DC conjugates are dispensable for CD4 lymphocyte proliferation inside lymph nodes.
DOI: 10.6084/m9.figshare.8970977
title: Location 10x

description: leukocyte detection
DOI: 10.6084/m9.figshare.8970977.v1
title: Location 10x

description: leukocyte detection
DOI: 10.6084/m9.figshare.8970689
title: Supplementary data for the presence of metabolically relevant genes.

description: Identifications of relevant metabolically relevant genes in other organisms was performed with tblastx against the NCBI NT database (downloaded on 29.04.2020), with an evalue of 0.0001 and the option –max_target_seqs 1000000. For the operons three operons, the whole operon was used for the tblastx search, and presence of an operon was evaluated with a custom script by inspecting the co-occurrence of the genes within a range of 20.000 bp to each other. A gene was considered present if 25% of its basepairs had a match in the target genome. For all other genes, the coding sequence of the gene was used for the tblastx search.<br>This repository contains the result of the blast searches of all these genes/operons, as well as the python code which was used to evalute their presence/absence.<br>
DOI: 10.6084/m9.figshare.8970638
title: Data on volatile compounds in the scent bouquet of fruits of Ficus colubrinae

description: We analyzed volatile composition in the scent bouquet of fruits of <i>Ficus colubrinae</i>. The data contains three samples: unripe fruits during day, ripe fruits during day and ripe fruits during night. The dataset contains relative amounts of 12 individual or co-eluting substances. All samples were analyzed with an HP5890 Series II gas chromatograph (Hewlett-Packard, Palo Alto, CA, USA). GC/MS analyses were carried out on an HP 6890 Series GC connected to an HP 5973 mass selective detector (Hewlett-Packard) fitted with a BPX5 fused-silica column (25 m, 0.22 mm i.d., 0.25 μm film thick, SGE). <br>
DOI: 10.6084/m9.figshare.8970638.v1
title: Data on volatile compounds in the scent bouquet of fruits of Ficus colubrinae

description: We analyzed volatile composition in the scent bouquet of fruits of <i>Ficus colubrinae</i>. The data contains three samples: unripe fruits during day, ripe fruits during day and ripe fruits during night. The dataset contains relative amounts of 12 individual or co-eluting substances. All samples were analyzed with an HP5890 Series II gas chromatograph (Hewlett-Packard, Palo Alto, CA, USA). GC/MS analyses were carried out on an HP 6890 Series GC connected to an HP 5973 mass selective detector (Hewlett-Packard) fitted with a BPX5 fused-silica column (25 m, 0.22 mm i.d., 0.25 μm film thick, SGE). <br>
DOI: 10.6084/m9.figshare.8970689.v1
title: Supplementary data for the presence of formate dehydrogenase and related genes

description: Identifications of relevant CO2 fixation genes in other organisms was performed with tblastx against the NCBI NT database (downloaded on 31.05.2017), with an evalue of 0.0001 and the option –max_target_seqs 1000000. For the operons of glycine reductase, glycine dehydrogenase and formate dehydrogenase, the whole operon was used for the tblastx search, and presence of an operon was evaluated with a custom script by inspecting the co-occurrence of the genes within a range of 20.000 bp to each other. A gene was considered present if 25% of its basepairs had a match in the target genome. For all other genes, the coding sequence of the gene was used for the tblastx search.<br>This repository contains the result of the blast searches of all these genes/operons, as well as the python code which was used to evalute their presence/absence.<br>
DOI: 10.6084/m9.figshare.8970689.v2
title: Supplementary data for the presence of metabolically relevant genes.

description: Identifications of relevant metabolically relevant genes in other organisms was performed with tblastx against the NCBI NT database (downloaded on 31.05.2017), with an evalue of 0.0001 and the option –max_target_seqs 1000000. For the operons three operons, the whole operon was used for the tblastx search, and presence of an operon was evaluated with a custom script by inspecting the co-occurrence of the genes within a range of 20.000 bp to each other. A gene was considered present if 25% of its basepairs had a match in the target genome. For all other genes, the coding sequence of the gene was used for the tblastx search.<br>This repository contains the result of the blast searches of all these genes/operons, as well as the python code which was used to evalute their presence/absence.<br>
DOI: 10.6084/m9.figshare.8970602
title: Climate_Israel20162018_V21.06.2019_TableS2.Rdata

description: Rdata file contains the climatic data (temperature and humidity) for meteorological stations across Israel for the period 2016-2018.
DOI: 10.6084/m9.figshare.8970605
title: WNVReports_Israel20162018_V21.06.2019_TableS3.Rdata

description: Rdata file contains the WNV reports per district in Israel for the period 2016-2018.
DOI: 10.6084/m9.figshare.8970602.v1
title: Climate_Israel20162018_V21.06.2019_TableS2.Rdata

description: Rdata file contains the climatic data (temperature and humidity) for meteorological stations across Israel for the period 2016-2018.
DOI: 10.6084/m9.figshare.8970605.v1
title: WNVReports_Israel20162018_V21.06.2019_TableS3.Rdata

description: Rdata file contains the WNV reports per district in Israel for the period 2016-2018.
DOI: 10.6084/m9.figshare.8970596
title: IndexP_Israel20162018_V21.06.2019_TableS1.Rdata

description: Rdata file contains the (daily) estimated index P across various meteorological stations of Israel for the period 2016-2018.
DOI: 10.6084/m9.figshare.8970689.v4
title: Supplementary data for the presence of metabolically relevant genes.

description: Identifications of relevant metabolically relevant genes in other organisms was performed with tblastx against the NCBI NT database (downloaded on 31.05.2017), with an evalue of 0.0001 and the option –max_target_seqs 1000000. For the operons three operons, the whole operon was used for the tblastx search, and presence of an operon was evaluated with a custom script by inspecting the co-occurrence of the genes within a range of 20.000 bp to each other. A gene was considered present if 25% of its basepairs had a match in the target genome. For all other genes, the coding sequence of the gene was used for the tblastx search.<br>This repository contains the result of the blast searches of all these genes/operons, as well as the python code which was used to evalute their presence/absence.<br>
DOI: 10.6084/m9.figshare.8970578
title: IMC y relaciones inicio y finalización.xlsx

description: Database of the article titled: <b>INTRAPARTUM AND NEONATAL OUTCOMES FOLLOWING PARTICIPATION IN A WATER-BASED EXERCISE PROGRAMME: A RANDOMIZED CLINICAL TRIAL</b><b> </b>
DOI: 10.6084/m9.figshare.8970596.v1
title: IndexP_Israel20162018_V21.06.2019_TableS1.Rdata

description: Rdata file contains the (daily) estimated index P across various meteorological stations of Israel for the period 2016-2018.
DOI: 10.6084/m9.figshare.8970578.v1
title: IMC y relaciones inicio y finalización.xlsx

description: Database of the article titled: <b>INTRAPARTUM AND NEONATAL OUTCOMES FOLLOWING PARTICIPATION IN A WATER-BASED EXERCISE PROGRAMME: A RANDOMIZED CLINICAL TRIAL</b><b> </b>
DOI: 10.6084/m9.figshare.8970335
title: Spatial Composite Impact Assessment Model Data set

description: The data set contains:<br>1. AHP Questionnaire, Estimated criteria weight and method of sensitivity analysis using GIS and one-factor at a time techniques.<br>2. Figures of the study<br>3. Raster data set fas ArcGIS GBD of the impact category maps and composite impact map<br>4. Calculation of composite impact index
DOI: 10.6084/m9.figshare.8970293
title: Primary productivity data

description: Measurements of primary productivity (mgC/m^3/d) at specified light levels.
DOI: 10.6084/m9.figshare.8970293.v1
title: Primary productivity data

description: Measurements of primary productivity (mgC/m^3/d) at specified light levels.
DOI: 10.6084/m9.figshare.8970272
title: Summary of identified phages in Azospirillum brasilense MTCC strains

description: Bacteriophages in Azospirillum brasilense MTCC genomes
DOI: 10.6084/m9.figshare.8970272.v1
title: Summary of identified phages in Azospirillum brasilense MTCC strains

description: Bacteriophages in Azospirillum brasilense MTCC genomes
DOI: 10.6084/m9.figshare.8970050
title: Raw data_A study of postpartum health care provided by community health volunteers in the Philippines.xlsx

description: This is raw data of the paper "Current status and challenges regarding the provision of postpartum healthcare services by community health volunteers in the Philippines: A qualitative content analytic study".
DOI: 10.6084/m9.figshare.8970062
title: Characteristics of Azospirillum brasilense MTCC strains genomes

description: Statistics of replicons of Azospirillum brasilense MTCC strains
DOI: 10.6084/m9.figshare.8970038
title: Project New

description: Final 95 records
DOI: 10.6084/m9.figshare.8970038.v1
title: Project New

description: Final 95 records
DOI: 10.6084/m9.figshare.8969996
title: Additional file 4: of Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana

description: List ofÂ Unique DEGs in specific comparative light conditions. (XLSX 40kb)
DOI: 10.6084/m9.figshare.8969996.v1
title: Additional file 4: of Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana

description: List ofÂ Unique DEGs in specific comparative light conditions. (XLSX 40kb)
DOI: 10.6084/m9.figshare.8969990
title: Additional file 3: of Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana

description: ListÂ of DEGs Common in two, three, four or five comparative light conditions. (xlsx 1970 kb)
DOI: 10.6084/m9.figshare.8969990.v1
title: Additional file 3: of Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana

description: ListÂ of DEGs Common in two, three, four or five comparative light conditions. (xlsx 1970 kb)
DOI: 10.6084/m9.figshare.8969963
title: A global dataset of phosphorus addition experiments in terrestrial ecosystems

description: Phosphorus (P) limitation of aboveground plant production is usually assumed to occur in tropical regions but rarely elsewhere. Here we report that such P limitation is more widespread and much stronger than previously estimated. In our global meta-analysis, almost half (46.2%) of 652 P-addition field experiments reveal a significant P limitation on aboveground plant production. Globally, P additions increase aboveground plant production by 34.9% in natural terrestrial ecosystems, which is 7.0–15.9% higher than previously suggested. In croplands, by contrast, P additions increase aboveground plant production by only 13.9%, probably because of historical fertilizations. The magnitude of P limitation also differs among climate zones and regions, and is driven by climate, ecosystem properties, and fertilization regimes. In addition to confirming that P limitation is widespread in tropical regions, our study demonstrates that P limitation often occurs in other regions. This suggests that previous studies have underestimated the importance of altered P supply on aboveground plant production in natural terrestrial ecosystems.
DOI: 10.6084/m9.figshare.8969963.v1
title: A global dataset of phosphorus addition experiments in terrestrial ecosystems

description: Phosphorus (P) limitation of aboveground plant production is usually assumed to occur in tropical regions but rarely elsewhere. Here we report that P limitation of aboveground plant production is more widespread and much stronger than previously estimated. In our meta-analysis of 652 P-addition field experiments described in 285 published studies, almost half (46.2%) of the experiments reveal a significant P limitation on aboveground plant production. Globally, P additions increase aboveground plant production by 34.9% in natural terrestrial ecosystems, which is 7.0–15.9% higher than that previously suggested. In croplands, in contrast, P additions increase aboveground plant production by only 13.9%; this increase is less than in natural terrestrial ecosystems probably because of historical fertilizations of croplands. The magnitude of P limitation also differs among climate zones and regions, and is evidently driven by climate, ecosystem properties, and fertilization regimes. In addition to confirming that P limitation is widespread in tropical regions, our study also demonstrates that P limitation often occurs in other regions. Our results suggest that previous studies have underestimated the importance of altered P supply on aboveground plant production in natural terrestrial ecosystems.<br>
DOI: 10.6084/m9.figshare.8969963.v2
title: A global dataset of phosphorus addition experiments in terrestrial ecosystems

description: Phosphorus (P) limitation of aboveground plant production is usually assumed to occur in tropical regions but rarely elsewhere. Here we report that P limitation of aboveground plant production is more widespread and much stronger than previously estimated. In our meta-analysis of 652 P-addition field experiments described in 285 published studies, almost half (46.2%) of the experiments reveal a significant P limitation on aboveground plant production. Globally, P additions increase aboveground plant production by 34.9% in natural terrestrial ecosystems, which is 7.0–15.9% higher than that previously suggested. In croplands, in contrast, P additions increase aboveground plant production by only 13.9%; this increase is less than in natural terrestrial ecosystems probably because of historical fertilizations of croplands. The magnitude of P limitation also differs among climate zones and regions, and is evidently driven by climate, ecosystem properties, and fertilization regimes. In addition to confirming that P limitation is widespread in tropical regions, our study also demonstrates that P limitation often occurs in other regions. Our results suggest that previous studies have underestimated the importance of altered P supply on aboveground plant production in natural terrestrial ecosystems. Paper on this dataset is, in principle,accepted for publication in Nature Communications (updated 18th December, 2019).<br>
DOI: 10.6084/m9.figshare.8969963.v3
title: A global dataset of phosphorus addition experiments in terrestrial ecosystems

description: Phosphorus (P) limitation of aboveground plant production is usually assumed to occur in tropical regions but rarely elsewhere. Here we report that P limitation of aboveground plant production is more widespread and much stronger than previously estimated. In our meta-analysis of 652 P-addition field experiments described in 285 published studies, almost half (46.2%) of the experiments reveal a significant P limitation on aboveground plant production. Globally, P additions increase aboveground plant production by 34.9% in natural terrestrial ecosystems, which is 7.0–15.9% higher than that previously suggested. In croplands, in contrast, P additions increase aboveground plant production by only 13.9%; this increase is less than in natural terrestrial ecosystems probably because of historical fertilizations of croplands. The magnitude of P limitation also differs among climate zones and regions, and is evidently driven by climate, ecosystem properties, and fertilization regimes. In addition to confirming that P limitation is widespread in tropical regions, our study also demonstrates that P limitation often occurs in other regions. Our results suggest that previous studies have underestimated the importance of altered P supply on aboveground plant production in natural terrestrial ecosystems. Paper on this dataset is, in principle,accepted for publication in Nature Communications (updated 18th December, 2019).<br>
DOI: 10.5517/ccdc.csd.cc24w2kp
title: CCDC 1992232: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176
DOI: 10.6084/m9.figshare.8969903
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Molecular Dynamics Analysis

description: Trajectory analysis of molecular-dynamics simulations from th publication "Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE"
DOI: 10.5517/ccdc.csd.cc24w2lq
title: CCDC 1992233: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176
DOI: 10.6084/m9.figshare.8969900
title: Time data for humpback whale song occurrence and associated full recording time series

description: This dataset contains the time information for occurrence of humpback whale song, as well as the full period of recording, for the first three years of recordings at the MARS hydrophone off central California. Times are discretized to 1 minute intervals to enable analyses at all relevant time scales: diel, seasonal, and interannual.
DOI: 10.6084/m9.figshare.8969963.v4
title: A global dataset of phosphorus addition experiments in terrestrial ecosystems

description: Phosphorus (P) limitation of aboveground plant production is usually assumed to occur in tropical regions but rarely elsewhere. Here we report that P limitation of aboveground plant production is more widespread and much stronger than previously estimated. In our meta-analysis of 652 P-addition field experiments described in 285 published studies, almost half (46.2%) of the experiments reveal a significant P limitation on aboveground plant production. Globally, P additions increase aboveground plant production by 34.9% in natural terrestrial ecosystems, which is 7.0–15.9% higher than that previously suggested. In croplands, in contrast, P additions increase aboveground plant production by only 13.9%; this increase is less than in natural terrestrial ecosystems probably because of historical fertilizations of croplands. The magnitude of P limitation also differs among climate zones and regions, and is evidently driven by climate, ecosystem properties, and fertilization regimes. In addition to confirming that P limitation is widespread in tropical regions, our study also demonstrates that P limitation often occurs in other regions. Our results suggest that previous studies have underestimated the importance of altered P supply on aboveground plant production in natural terrestrial ecosystems. <br>Paper on this dataset is, in principle,accepted for publication in Nature Communications (updated 18th December, 2019).<br>
DOI: 10.5517/ccdc.csd.cc24w2mr
title: CCDC 1992234: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176
DOI: 10.6084/m9.figshare.8969903.v2
title: SI: Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE: Molecular Dynamics Analysis

description: Trajectory analysis of molecular-dynamics simulations from th publication "Radical Stabilization Energies for Enzyme Engineering – Tackling the Substrate Scope of the Radical Enzyme QueE"
DOI: 10.5517/ccdc.csd.cc24w2ns
title: CCDC 1992235: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176
DOI: 10.6084/m9.figshare.8969888
title: Humpback whale sighting data

description: Time-series of daily mean sightings of humpback whales per 1/2 day trip in southern Monterey Bay, California. Data from Monterey Bay Whale Watch, processed by Karin Forney of NOAA.
DOI: 10.6084/m9.figshare.8969891
title: Humpback whale song length (duration) data

description: Measurements of humpback whale song duration from analysis of recordings in Monterey Bay, California
DOI: 10.6084/m9.figshare.8969897
title: Modeled received levels for humpback song at hydrophone recording location

description: This file contains a 2-D grid of modeled received levels at the location of a hydrophone, for a sound source having attributes of humpback whale song.
DOI: 10.5517/ccdc.csd.cc24w2pt
title: CCDC 1992236: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176
DOI: 10.6084/m9.figshare.8969888.v1
title: Humpback whale sighting data

description: Time-series of daily mean sightings of humpback whales per 1/2 day trip in southern Monterey Bay, California. Data from Monterey Bay Whale Watch, processed by Karin Forney of NOAA.
DOI: 10.6084/m9.figshare.8969897.v1
title: Modeled received levels for humpback song at hydrophone recording location

description: This file contains a 2-D grid of modeled received levels at the location of a hydrophone, for a sound source having attributes of humpback whale song.
DOI: 10.5517/ccdc.csd.cc24w2qv
title: CCDC 1992237: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176
DOI: 10.6084/m9.figshare.8969891.v1
title: Humpback whale song length (duration) data

description: Measurements of humpback whale song duration from analysis of recordings in Monterey Bay, California
DOI: 10.5517/ccdc.csd.cc24w2rw
title: CCDC 1992238: Experimental Crystal Structure Determination

description: Related Article: Laura Köttner, Monika Schildhauer, Sandra Wiedbrauk, Peter Mayer, Henry Dube|2020|Chem.-Eur.J.|26|10712|doi:10.1002/chem.202002176