cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10477871
title: Data from: On critical dependence of atmospheric circulation response to regional SST biases on background SST

description: Understanding the impact of sea surface temperature (SST) biases on simulated atmospheric circulation is crucial for uncertainty quantification in climate projection. Here, we investigate the impact of regional SST biases on the model atmosphere and how this impact varies with the geographic location of the SST bias. We performed 106 idealized century-long sensitivity simulations with an intermediate complex atmospheric model. Based on these simulations, we assessed the effect of regional SST biases on the global atmospheric circulation using a novel dynamical approach, which enables us to quantify the changes in global spatio-temporal variability. The amplitude of the global atmospheric response to regional SST biases is found to depend strongly on the local background SST. SST biases in warmer tropical oceans have much stronger impacts than those in cooler extratropical oceans. In particular, given an SST bias of +1.5 K, there is a substantial response when the local background SST exceeds approximately 25°C.

 

Seven datasets produced by MATLAB.

"sst_biases.mat" contains 106 SST biases used in the model.

"local_mean_sst.mat" contains local mean background SST within each SST bias area.

"bias_precip_maps.mat" contains horizontal maps of total precipitation biases.

"local_precip_bias.mat" contains local mean precipitation bias within each SST bias area.

"bias_geopotential_height_250hPa_maps.mat" contains horizontal maps of geopotential height biases at 250 hPa

"bias_global_wave_energy.mat" contains changes in the globally integrated wave energy.                "bias_global_wave_interannual_variance.mat" contains changes in the globally integrated interannual variance.
DOI: 10.5281/zenodo.10477872
title: Data from: On critical dependence of atmospheric circulation response to regional SST biases on background SST

description: Understanding the impact of sea surface temperature (SST) biases on simulated atmospheric circulation is crucial for uncertainty quantification in climate projection. Here, we investigate the impact of regional SST biases on the model atmosphere and how this impact varies with the geographic location of the SST bias. We performed 106 idealized century-long sensitivity simulations with an intermediate complex atmospheric model. Based on these simulations, we assessed the effect of regional SST biases on the global atmospheric circulation using a novel dynamical approach, which enables us to quantify the changes in global spatio-temporal variability. The amplitude of the global atmospheric response to regional SST biases is found to depend strongly on the local background SST. SST biases in warmer tropical oceans have much stronger impacts than those in cooler extratropical oceans. In particular, given an SST bias of +1.5 K, there is a substantial response when the local background SST exceeds approximately 25°C.

 

Seven datasets produced by MATLAB.

"sst_biases.mat" contains 106 SST biases used in the model.

"local_mean_sst.mat" contains local mean background SST within each SST bias area.

"bias_precip_maps.mat" contains horizontal maps of total precipitation biases.

"local_precip_bias.mat" contains local mean precipitation bias within each SST bias area.

"bias_geopotential_height_250hPa_maps.mat" contains horizontal maps of geopotential height biases at 250 hPa

"bias_global_wave_energy.mat" contains changes in the globally integrated wave energy.                "bias_global_wave_interannual_variance.mat" contains changes in the globally integrated interannual variance.
DOI: 10.5281/zenodo.10391363
title: Data for Decadal variability of ice-shelf melt in the Amundsen Sea driven by freshwater fluxes

description: Massachusetts Institute of Technology general circulation model (MITgcm, https://github.com/MITgcm/MITgcm) model output used in study 'Decadal variability of ice-shelf melt in the Amundsen Sea driven by freshwater fluxes' by Michael Haigh and Paul R. Holland (2024), Geophysical Research Letters. Also provided are Python scripts for processing the data.

The model uses a 1/10 degree resolution, 50 vertical levels configuration of the Amundsen Sea. The domain spans 140°W to 80°W and 76°S to 62°S. The model includes ocean, ice-shelf and sea-ice thermodynamics. The model is forced by ERA5 atmospheric data during 1979-2019.

6 NetCDF files are included in the dataset:



state2D.nc

stateExf.nc

stateRho.nc

stateTheta.nc

stateUvel.nc

stateVvel.nc


Also provided is a zip file containing: (1) *.data and *.meta files of model grid data, (2) Python scripts for processing model output and (3) *.npy files which are outputs of PROCESS_DATA.py and can be plotted using PLOT_DATA.py.

The provided Python scripts produce figures for 'Haigh & Holland (2024), Decadal variability of ice-shelf melt in the Amundsen Sea driven by freshwater fluxes.'  Sea README.md for details.

This research was funded by the NERC project ``Drivers of Oceanic Change in the Amundsen Sea'', NE/T012803/1.
DOI: 10.5281/zenodo.10391364
title: Data for Decadal variability of ice-shelf melt in the Amundsen Sea driven by freshwater fluxes

description: Massachusetts Institute of Technology general circulation model (MITgcm, https://github.com/MITgcm/MITgcm) model output used in study 'Decadal variability of ice-shelf melt in the Amundsen Sea driven by freshwater fluxes' by Michael Haigh and Paul R. Holland (2024), Geophysical Research Letters. Also provided are Python scripts for processing the data.

The model uses a 1/10 degree resolution, 50 vertical levels configuration of the Amundsen Sea. The domain spans 140°W to 80°W and 76°S to 62°S. The model includes ocean, ice-shelf and sea-ice thermodynamics. The model is forced by ERA5 atmospheric data during 1979-2019.

6 NetCDF files are included in the dataset:



state2D.nc

stateExf.nc

stateRho.nc

stateTheta.nc

stateUvel.nc

stateVvel.nc


Also provided is a zip file containing: (1) *.data and *.meta files of model grid data, (2) Python scripts for processing model output and (3) *.npy files which are outputs of PROCESS_DATA.py and can be plotted using PLOT_DATA.py.

The provided Python scripts produce figures for 'Haigh & Holland (2024), Decadal variability of ice-shelf melt in the Amundsen Sea driven by freshwater fluxes.'  Sea README.md for details.

This research was funded by the NERC project ``Drivers of Oceanic Change in the Amundsen Sea'', NE/T012803/1.
DOI: 10.17630/c62c9350-b027-44f8-b553-b28cd7b4818f
title: Phosphine and Selenoether peri-Substituted Acenaphthenes and their Transition Metal Complexes: Structural and NMR Investigations (dataset)

description: NMR, IR, Raman, DFT calculations, MS and HRMS data
DOI: 10.17630/385fe69b-6192-4604-8c1f-ba68e14b404f
title: Data underpinning "A general one-step synthesis of alkanethiyl-stabilized gold nanoparticles with control over core size and monolayer functionality"
DOI: 10.17630/71f8e2e5-9f57-4160-8c32-de1b37d4c073
title: Spectroscopically orthogonal labelling to disentangle site-specific nitroxide label distributions (dataset)
DOI: 10.17630/769a70cb-e5d5-4078-9b21-96b6e3e887ef
title: Large cross-effect DNP enhancements with kilowatt inverting chirped pulses at 94 GHz (dataset)

description: Dataset of paper "Large cross-effect DNP enhancements with kilowatt inverting chirped pulses at 94 GHz"
DOI: 10.5281/zenodo.10476159
title: Simulations of Synaptotagmin-7, C2A, C2B, and C2AB in PC/PS, PC/PS/PIP2, PC/PIP2, and PC/PS/Chol bilayers

description: All-atom simulations of Synaptotagmin-7 (C2A, C2B, and tandem domains) in four bilayer compositions. Circa 2 microseconds total with AMBER (dcd files are labeled with "amber").
DOI: 10.5281/zenodo.10476160
title: Simulations of Synaptotagmin-7, C2A, C2B, and C2AB in PC/PS, PC/PS/PIP2, PC/PIP2, and PC/PS/Chol bilayers

description: All-atom simulations of Synaptotagmin-7 (C2A, C2B, and tandem domains) in four bilayer compositions. Circa 2 microseconds total with AMBER (dcd files are labeled with "amber").
DOI: 10.17630/dd5c01d4-8109-4fa5-8c16-9bceb54a7169
title: Highly cooperative CO2 Adsorption via a Cation Crowding Mechanism on a Cesium-Exchanged Phillipsite Zeolite (dataset)
DOI: 10.17630/8603890e-da81-4225-9343-a3f5baba470c
title: Dataset underpinning "Mechanism of Cu-catalyzed iododeboronation: A description of ligand-enabled transmetalation, disproportionation, and turnover in Cu-mediated oxidative coupling reactions"
DOI: 10.6084/m9.figshare.21878706
title: Adverse events table

description: <i>There was no evidence of differences</i><i>307 between groups in the incidence of maternal-reported episodes of diarrhoea, fever, cough, skin</i><i>308 infection, eye infection and nasal discharge.</i><i>Key to variables:</i><i>ID: study identification number;</i><i>treat: intervention group (iron or placebo; groups are separated by a yellow bar);</i><i>N-epi: number of episodes;</i><i>Totd: Total duration (number of days with reported condition);</i><i>obs: total observation time</i><i>Light red/light blue/light green: condition of interest reported to be absent;</i><i>Dark red/dark blue/dark green: condition of interest reported to be present;</i><i>White cells: censored (child not present or no report received).</i><i>Individual episodes (see text for case definitions) are indicated by borders (black or red)</i><br>
DOI: 10.6084/m9.figshare.21878706.v1
title: Adverse events table

description: <em>There was no evidence of differences</em>
<em>307 between groups in the incidence of maternal-reported episodes of diarrhoea, fever, cough, skin</em>
<em>308 infection, eye infection and nasal discharge.</em>
DOI: 10.6084/m9.figshare.21878706.v2
title: Adverse events table

description: <i>There was no evidence of differences</i><i>307 between groups in the incidence of maternal-reported episodes of diarrhoea, fever, cough, skin</i><i>308 infection, eye infection and nasal discharge.</i><i>Key to variables:</i><i>ID: study identification number;</i><i>treat: intervention group (iron or placebo; groups are separated by a yellow bar);</i><i>N-epi: number of episodes;</i><i>Totd: Total duration (number of days with reported condition);</i><i>obs: total observation time</i><i>Light red/light blue/light green: condition of interest reported to be absent;</i><i>Dark red/dark blue/dark green: condition of interest reported to be present;</i><i>White cells: censored (child not present or no report received).</i><i>Individual episodes (see text for case definitions) are indicated by borders (black or red)</i><br>
DOI: 10.17630/dcf8f58e-2ed6-40de-8025-51beeb31e4e7
title: Phase field modelling of crystal growth of NaCl in two dimensions (dataset)

description: Data set for the publication titled "Phase field modelling of crystal growth of NaCl in two dimensions" in CrystEngComm.
DOI: 10.34740/kaggle/dsv/7376521
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.17630/df058940-8cac-4ee2-abf4-da914cbcc446
title: Dataset underpinning "Pd-catalyzed homologation of arylboronic acids as a platform for the diversity-orientated synthesis of benzylic C–X bonds"
DOI: 10.5281/zenodo.10478362
title: 3-D orchards data set

description: The file collects the raw the answers from the three different surveys performed during the project of the project GP/EFSA/ENCO/2020/03: PPP exposure models for 3-D orchards considering spraying technologies in Southern Europe
DOI: 10.5281/zenodo.10478363
title: 3-D orchards data set

description: The file collects the raw the answers from the three different surveys performed during the project of the project GP/EFSA/ENCO/2020/03: PPP exposure models for 3-D orchards considering spraying technologies in Southern Europe
DOI: 10.17630/2c93b181-0a7b-46b0-9b26-5a3d26622d6c
title: Prominences: the phantom menace (thesis data)
DOI: 10.17630/99214eaf-bdbd-431b-98d2-890b25f2c2d6
title: Dataset for Thermoelectric properties and Kondo transition in the pseudo-gap metals TiNiSi and TiNiGe
DOI: 10.17630/9732988f-ed9c-4f03-92ff-5545d779e42d
title: Learning & Interpreting The Galaxy-Halo Connection In Cosmic Simulations (thesis data)

description: Contains calculated halo and galaxy variables and derived mock observable quantities; predictions by the machine learning model and modifications by stochastic amendment, in hdf5 format. The data is divided into six zip files: train.zip: TNG simulation data used to train the neural networks test.zip: TNG simulation data used to assess the predictions of the trained models pred.zip: Outputs of the trained models when applied to the test data. stoch.zip: Predicted data following stochastic modification. dark.zip: Outputs of the trained models when applied to the TNG-Dark simulation data. uchuu.zip: Outputs of the trained models when applied to the Uchuu simulation data.
DOI: 10.57745/opfh8q
title: dataset TransfertN AFE - Biomass and isotopic analyses.tab

description: Dataset of biomass and istopic analyses by species in an alfalfa-tall fescue (A_FE) mixture and correpsponding pure stands (A, FE) for each of 23 harvest dates over 6 years and 4 blocks.

- Treatment: A_FE, A or FE
Species: Alfalfa or Fescue
- Plant parts: ID for harvested shoots (Harvest_shoot), stubble (Stubble_shoot), taproot (taproot) and roots (lateral_roots in A, roots in FE)
- Yesp_m2: Dry mass per unit area for a species (g.m-2)
- Ytot_m2:Total dry mass per unit area for the plot (g.m-2)
- N_pc (%): Nitrogen concentration
- C_pc (%): Carbon concentration
- d15N (delta): delta 15N isotopic ratio for natural abundance labelling treatment
- d13C (delta): delta 13C isotopic ratio for natural abundance labelling treatment
- frac_leaf: leaf mass fraction in the harvested shoots
- frac_stem: stem mass fraction in the harvested shoots
- frac_flower: flower mass fraction in harvested shoots
DOI: 10.17630/5944443f-21ce-4570-95c4-ee55c518f9c1
title: Cobalt-Catalyzed Wagner–Meerwein Rearrangements with Concomitant Nucleophilic Hydrofluorination (dataset)
DOI: 10.5281/zenodo.10478345
title: Development and in vitro Evaluation of Floating Mucoadhesive Tablet of Acebutolol Hydrochloride

description: In this study, it was intended to formulate floating Mucoadhesive tablets containing Acebutolol hydrochloride, an antihypertensive agent, to release the drug for a prolonged period of time in the upper part of the gastrointestinal tract in order to first-pass metabolism for improvement in bioavailability, to decrease the frequency of dosing, and to improve patient compliance. The effects of several polymers, including HPMC K4M and Carbopol 934, on the Mucoadhesive strength and release kinetics of floating Mucoadhesive tablets of Acebutolol hydrochloride were studied. The pre-compression blend of Acebutolol hydrochloride mucoadhesive tablets were characterized with respect to angle of repose, bulk density, tapped density, carr’s index and Hausner’s ratio and all the results indicated that the blend was having good flow property and hence better compression properties. The swelling studies were performed for the formulations and the results depicted that all the formulations have a good swelling index. The drug release studies depicted that the formulations release the drug in first order. So based on the results, formulation F3 was found to be an optimized formulation.
DOI: 10.5281/zenodo.10478346
title: Development and in vitro Evaluation of Floating Mucoadhesive Tablet of Acebutolol Hydrochloride

description: In this study, it was intended to formulate floating Mucoadhesive tablets containing Acebutolol hydrochloride, an antihypertensive agent, to release the drug for a prolonged period of time in the upper part of the gastrointestinal tract in order to first-pass metabolism for improvement in bioavailability, to decrease the frequency of dosing, and to improve patient compliance. The effects of several polymers, including HPMC K4M and Carbopol 934, on the Mucoadhesive strength and release kinetics of floating Mucoadhesive tablets of Acebutolol hydrochloride were studied. The pre-compression blend of Acebutolol hydrochloride mucoadhesive tablets were characterized with respect to angle of repose, bulk density, tapped density, carr’s index and Hausner’s ratio and all the results indicated that the blend was having good flow property and hence better compression properties. The swelling studies were performed for the formulations and the results depicted that all the formulations have a good swelling index. The drug release studies depicted that the formulations release the drug in first order. So based on the results, formulation F3 was found to be an optimized formulation.
DOI: 10.17630/6760d05d-114b-47ee-99bf-c9481cf25a55
title: Order-Disorder and Ionic Conductivity in Calcium Nitride-Hydride (dataset)

description: reference data for paper
DOI: 10.17630/36c115ac-4dbb-4a87-a3e9-c042f8f1a91e
title: Manganese Catalysed Dehydrogenative Synthesis of Polyureas from Diformamide and Diamines (dataset)
DOI: 10.5523/bris.phtj9yrbdkrq2t6n53k84evkg
title: Epistasis Arises from Shifting the Rate-Limiting Step during Enzyme Evolution of a β-lactamase

description: Data related to:

"Epistasis Arises from Shifting the Rate-Limiting Step during Enzyme Evolution of a β-lactamase".

Christopher Fröhlich, H. Adrian Bunzel, Karol Buda, Adrian J. Mulholland, Marc W. van der Kamp, Pål J. Johnsen, Hanna-Kirsti S. Leiros, Nobuhiko Tokuriki 

Nature Catalysis 2023. 

This repository contains Jupyter notebooks and input files required to replicate the MD simulations and analyses of the OXA-48 variants, as well as trajectories and MD snapshots. The repository furthermore contains PDB structures of all ensemble refinements presented in this work.
DOI: 10.6084/m9.figshare.24972945
title: The raw data of bacterial, fungal, protist and nematode communtiies

description: The raw data of bacterial, fungal, protist and nematode communtiies
DOI: 10.6084/m9.figshare.24972945.v1
title: The raw data of bacterial, fungal, protist and nematode communtiies

description: The raw data of bacterial, fungal, protist and nematode communtiies
DOI: 10.17630/5c14bb2d-836d-42db-ab6a-4d85afa564cc
title: Merging Boron and Carbonyl based MR-TADF Emitter Designs to Achieve High Performance Deep Blue OLEDs (dataset)
DOI: 10.17630/bbcde7e9-a2e1-4a34-8df9-f7d07937f05e
title: Millimetre wave radar signatures of sea lions (dataset)

description: Raw radar data file of the Sea Lion signatures processed and analysed in the paper.
DOI: 10.5281/zenodo.10477742
title: Underwater images acquired at Obsea-UPC during ANERIS project for the Citizen Observatory MINKA
title: Location: Catalan Coast, western Mediterranean at 20m detph

description: Underwater Image dataset of fishes, macrofauna, acquired at Obsea during ANERIS project integrated into MINKA Citizen Science Platform.
DOI: 10.5281/zenodo.10477743
title: Underwater images acquired at Obsea-UPC during ANERIS project for the Citizen Observatory MINKA
title: Location: Catalan Coast, western Mediterranean at 20m detph

description: Underwater Image dataset of fishes, macrofauna, acquired at Obsea during ANERIS project integrated into MINKA Citizen Science Platform.
DOI: 10.17630/33380f7f-28cd-45b8-b55b-dd6b83651e89
title: Dataset underpinning "A chemoselective polarity-mismatched photocatalytic C(sp3)–C(sp2) cross-coupling enabled by synergistic boron activation"
DOI: 10.17630/0052eb13-a2d1-4d7a-9485-d5b2e247e63d
title: Predicting Ruthenium Catalysed Hydrogenation of Esters Using Machine Learning (dataset)
DOI: 10.17630/cf0c7769-e031-4bb2-8d88-b1636282e4a1
title: Manganese Catalysed Enantioselective Hydrogenation of in-situ-Synthesised Imines: Efficient Asymmetric Synthesis of Amino-indane Derivatives (dataset)
DOI: 10.6084/m9.figshare.24972858
title: Dataset 1

description: A set of data generated by Wordsmith version 7.0 for investigating Eileen Chang's style of translating from Chinese to English.
DOI: 10.6084/m9.figshare.24972858.v1
title: Dataset 1

description: A set of data generated by Wordsmith version 7.0 for investigating Eileen Chang's style of translating from Chinese to English.
DOI: 10.17630/1863d9da-1fe8-468c-a5fe-fcbe74bdaf32
title: Anal lesions (AIN + cancers) collected in Scotland from 2009 to 2018 (thesis data)
DOI: 10.17630/6ef7cb9e-c429-4932-92e9-d3227dc09dec
title: Benchmarking DFT functionals for excited-state calculations of Donor Acceptor TADF emitters: Insights on the key parameters determining Reverse Inter System Crossing (dataset)
DOI: 10.17630/1f1d9f50-ded0-4944-811d-496dfdbef38f
title: Lanthanide and yttrium substitution in natural fluorite (dataset)
DOI: 10.17630/7310cff9-f312-4bcf-81c5-000ef10205e1
title: Exploring the Properties of Selectively Fluorinated Janus Cyclohexane Rings (thesis data)

description: Research oringin data and supporting informations
DOI: 10.6084/m9.figshare.24973026
title: Fig. 2b

description: This data is used to plot the simulated and calculated results for the 9-seg loop antenna radiation patterns.
DOI: 10.6084/m9.figshare.24973026.v1
title: Fig. 2b

description: This data is used to plot the simulated and calculated results for the 9-seg loop antenna radiation patterns.
DOI: 10.17630/5e966cd7-4390-49bc-807b-4b6dc57cdec0
title: New Investigations of Monsoon Depressions Using Observational Data, Theory and Numerical Experiments (thesis data)

description: Graphs and schematics used in the thesis. Graphs in Chapters 1 and 2 are analyses of ERA5 data, and a schematic. Graphs in Chapters 3 and 4 are a mixture of analysis of numerical experiments, with a model of the author's own creation, and ERA5 and CMIP6 data, and a schematic. Graphs in Chapter 5 are analysis of experiments with the Isca GCM, with the author's own configuration and implementation, and analysis of ERA5 data and the model from the previous chapters.
DOI: 10.21227/2gxq-nz15
title: WEIGHT DATASET FOR FUSION RESULTS IN EDGE-CLOUD COLLABORATIVE INFERENCE

description: Our released fusion weights dataset contains the corresponding weighted summation weights under 20,000 edge-cloud collaborative DNN inference tasks, listing the five heterogeneous NVIDIA edge devices they use (NVIDIA Jetson Nano, TX2, NX, Orin NX, and AGX Orin), computing power (1.9~275TOPS), DNN model type (EfficientNet-B0, ViT-B16), and network bandwidth (0.5~8Mbps). We use a workstation with an NVIDIA GTX 3080 GPU as the cloud server and leverage Linux trickle to adjust the network bandwidth between the edge device and the cloud server. The computing power of edge devices is derived from the hardware manual. Two DNN models are implemented based on PyTorch.
DOI: 10.6084/m9.figshare.24968601
title: Crithidia kDNA annotations

description: This dataset describes the kDNA of Crithidia fasciculata.Cf.minicircles.fasta and Cf.maxicircles.fasta contain the assembled minicircle classes and maxicircle sequences.Cf_gRNAs lists the identified gRNAs. The fields specify: gRNA start position on minicircle, gRNA end position on minicircle, the minicircle class that encodes the gRNA, the mRNA edited by the gRNA, gRNA editing start position on mRNA, gRNA editing end position on mRNA.Cf.unedited.mRNAs.fasta contains unedited maxicircle genes, in which each heading indicates the gene location on the maxicircle contig and strand orientation.ND7_gRNA_alignment, A6_gRNA_alignment, and RPS12_gRNA_alignment visualizes the coverage of editing sites by predicted gRNAs on the edited mRNAs.kDNA annotation was performed with a custom version of the python package deposited on https://github.com/nicksavill/kDNA-annotation.restriction_site_presence shows the presence of restriction enzyme cutting sites on 18 minicircle classes and maxicircle.