cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15224722
title: Data Quality and Refinement Statistics Table for Microbial Resource Announcement - "Structural Genomics of Bacterial Drug Targets: Application of a High-Throughput Pipeline to Solve 58 Protein Structures from Pathogenic and Related Bacteria"

description: Table of Data Quality and Refinement Statistics for the Microbial Resource Announement Article:

 "Structural Genomics of Bacterial Drug Targets: Application of a High-Throughput Pipeline to Solve 58 Protein Structures from Pathogenic and Related Bacteria"
DOI: 10.5281/zenodo.14163478
title: Assessing the Risk of Internal Loading of Phosphorus from Drinking Reservoir Sediments

description: The natural process of lake and reservoir eutrophication through nutrient accumulation within sediments has been accelerated through anthropogenic sources of nitrogen and, especially, phosphorus (P). Stored nutrients can result in significant internal loading (during periods of low sediment redox potential or elevated pH) which may drive poor water quality despite best practice in catchment management. Internal P loading can promote proliferation of cyanobacterial and algal taxa responsible for Harmful Algal Blooms (HABs) as well as Taste and Odour (T&O) and cyanotoxin events. Here, we investigate the sediment and water column P content of eight reservoirs, by analysing iron-bound (Fe-P), calcium-bound (Ca-P) and labile P fractions.
DOI: 10.5281/zenodo.14604269
title: Pushing the Boundaries of Resolution in Solid-State Nuclear Magnetic Resonance of Biomolecules with 160 kHz Magic-Angle Spinning

description: NMR spectra of 15N,13C GB1 and AQPZ at 160 kHz MAS
DOI: 10.5281/zenodo.15323740
title: Spectral data accompanying the paper "The effect of elevated CO2 on hyperspectral leaf reflectance in mature trees".

description: Spectral database of leaf reflectance taken from the canopy of the BIFoR FACE experiment and accompanying analysis code.
DOI: 10.5281/zenodo.13837706
title: Data linked to the publication "NbS for CO2 emissions offsetting; a case study from Chania city center, Crete".

description: This record contains background data linked to the publication "NbS for CO2 emissions offsetting; a case study from Chania city center, Crete".

The datasets included are ENVI-met output files, spreadsheets with CO2 sequestration and Temperature data, derived from the ENVI-met output files as well as simulation results of the i-tree planting tool.

Please read the README files for explanation of the datasets included in this record.
DOI: 10.5281/zenodo.15566979
title: microCT scan mouse tail (Cell Reports Lacava et al 2025)
DOI: 10.5281/zenodo.15566980
title: microCT scan mouse tail (Cell Reports Lacava et al 2025)
DOI: 10.5281/zenodo.12800563
title: Dataset for "History and dynamics of Fennoscandian Ice Sheet retreat, contemporary ice-dammed lake evolution, and faulting in the Torneträsk area, northwestern Sweden"

description: This dataset contains the GIS shapefiles and the high resolution map for the manuscript "Ice-dammed lakes and contemporary faulting in the Torneträsk region of northern Sweden are key to understanding regional Fennoscandian Ice Sheet deglaciation patterns and dynamics" in preparation for The Cryosphere.
DOI: 10.5281/zenodo.14994640
title: The Effect of GPER1 genetic variants on systolic blood pressure in postmenopausal women in the UK Biobank

description: This dataset contains the summary effect estimates of single nucleotide polymorphisms (SNPs) in the GPER1 gene on systolic blood pressure for postmenopausal women in the UK Biobank. Table S1 shows the SNP effects for each GPER1 variant in all postmenopausal women regardless of parity. Table S2 shows SNP effects for each GPER1 variant in nulliparous women. Table S3 shows SNP effects for each GPER1 variant in multiparous women. Table S4 shows the difference in the SNP effects on mean systolic blood pressure in parous versus nulliparous women.
DOI: 10.5281/zenodo.15075198
title: Comparative Genomics of Cupriavidus necator

description: Additional data and code for paper on Comparative genomic assessment of the Cupriavidus necator species for one-carbon based biomanufacturing
DOI: 10.5281/zenodo.14187948
title: Volumetric and morphological analysis of the clades based on the in vivo confetti imaging

description: This dataset contains a script in programming language that describes the analytical pipeline for image processing of the in vivo data from the Confetti mice skin. The algorithm describes volumetric analysis, 3D reconstruction, density analysis, as well multiple other morphological parameters.
DOI: 10.5281/zenodo.14190468
title: Microscopic pairing in fission dynamics

description: Related to the work "Microscopic pairing in fission dynamics" by: A. Zdeb, M. Warda, L.M. Robledo, A. Baran

There are 11 directories, each of them contains the collection of data of the studied dynamically isotopes: 262Rf,242Fm, 244Fm, 246Fm, 248Fm, 250Fm, 252Fm, 254Fm, 256Fm, 258Fm, 260Fm. Inside of each directory devoted to a specific isotope, one can find 2 sub-directories related to the dynamic calculations with delta and delta n square dynamic coordinates:

- The pes.txt text files contain the results of the HFB calculations with the constraints on the q_20 and one of the mentioned above dynamic coordinate. 

- The minpaths text file contains the results of the least-action paths for all existing exit points of each isotope on the corresponding 2-dimensional potential energy surface.

- The inp1.txt text file contains the q_20, one of the considered dynamic coordinate, related to them and a relative (to the ground state) energy and the collective inertias tensor elements as described in the header of the file.

The research work of A.Z. and M.W. is a part of the project No.2021/43/P/ST2/03036 co-funded by the National Science Centre and the European Union Framework Programme for Research and Innovation Horizon 2020 under the Marie Skłodowska-Curie grant agreement no. 945339.
DOI: 10.5281/zenodo.14850973
title: Raw data and code for CSP

description: Raw data and code for manuscript entitled "The impact of boat activities associated with an acoustic fish telemetry study on waterbird populations in a Special Protection Area", submitted to Conservation Science and Practice
DOI: 10.5281/zenodo.13869576
title: Coaggregation of oral pathogens by postbiotic lactobacilli
DOI: 10.5281/zenodo.14041532
title: Microcrustaceans structure determined by the type and trophic state of lakes - Upper Paranapanema River, Brazil

description: The study was conducted in a segment of the Paranapanema River basin, in southeastern Brazil, focusing on five lakes spanning an eight-kilometer stretch, to understand the different organisms' responses to distinct conditions of aquatic environments. Sampling was carried out bimonthly over the course of a year.
DOI: 10.5281/zenodo.14041533
title: Microcrustaceans structure determined by the type and trophic state of lakes - Upper Paranapanema River, Brazil

description: The study was conducted in a segment of the Paranapanema River basin, in southeastern Brazil, focusing on five lakes spanning an eight-kilometer stretch, to understand the different organisms' responses to distinct conditions of aquatic environments. Sampling was carried out bimonthly over the course of a year.
DOI: 10.5281/zenodo.14192107
title: Critical Zone Observatory in Pianosa Island: Accumulation chambers n.1 and n.2 (27/03/2023-03/04/2024)

description: The installed instrumentation allows CO2 flux measurements from soil (emission and absorption/uptake) by non steady state closed dynamic accumulation Chambers.

The aim is to understand if the NEE (Net Ecosystem Exchange) is increasing or decreasing and which parameters most affect this important index. More over, the NEE parameter is extremely useful in climate models.

In particular chamber n.1 is a dark chamber and measures the ecosystem respiration while chamber n.2 is a transparent chamber and measures the NEE. The difference between the flux measured by chamber n.2 and that measured by chamber n.1 allows to calculate the GPP (Gross Primary Production).

The dataset includes the Net Ecosystem Exchange (NEE), Ecosystem Respiration (ER), air temperature and atmospheric pressure inside the chamber, soil temperature and soil humidity next to the chamber. It is also available the R2 of the regression line of the CO2 concentration versus time, of each chamber.

The data was collected thanks to EU - Next Generation EU Mission 4 "Education and Research - Component 2: "From research to business" - Investment 3.1: "Fund for the realisation of an integrated system of research and innovation infrastructures" - Project IR0000032 - ITINERIS - Italian Integrated Environmental Research Infrastructures System - CUP B53C22002150006.
DOI: 10.5281/zenodo.15226078
title: Simulations Associated With "The Spin Zone: Synchronously and Asynchronously Rotating Land Planets Have Spectral Differences in Transmission"

description: The ROCKE-3D simulation files associated with the manuscript "The Spin Zone: Synchronously and Asynchronously Rotating Land Planets Have Spectral Differences in Transmission". Because of the file size and quantity, they have been divided into zip files. The directory structure of these files are as follows: 



simulations.tgz: This zipped file contains subdirectories for each instellation and rotation case (spanning the entire parameter space described in the manuscipt). Inside each folder are the 3 scaleacc diagnostics required to generate transmission spectra through the globes scripts (https://github.com/nasapsg/globes): the aij (2D latitude-longitude maps), aijk (3D latitude-longitude-pressure maps), and aijl (3D latitude-longitude-model level maps) files, for each 25-year average. 

rundecks.tgz: This zipped file contains the rundecks used to initialize the ROCKE-3D simulation runs. 

rsf_files.tgz: This zipped file contains the .rsf files that can be used to resume the simulations.
DOI: 10.5281/zenodo.14005643
title: Relationship between baroreflex function and cerebral autoregulation during controlled breathing in healthy subjects - dataset

description: Funding

SONATA 18 UMO-2022/47/D/ST7/00229 National Science Center (database 2)

SONATA-BIS UMO-2013/10/E/ST7/00117 National Science Center (database1)

General information

Two datasets were used in this study.

The dataset 1 includes 49 healthy volunteers (28 females, 21 males, median age: 23 years, range: 18-31 years) who were measured at the Neuroengineering Laboratory at Wroclaw University of Science and Technology (WUST) between October 2014 and June 2015 (Biomedical Committee Agreement number: KB-170/2014).

The dataset  2 includes 21 healthy volunteers (14 females, 7 males, median age: 22 years, range: 18-31 years) who were prospectively measured at WUST between October 2023 and January 2024 (Biomedical Committee Agreement number: KB-179/2023/N).

Signal recordings description



ABP was measured non-invasively by a servo-controlled plethysmograph (Finometer MIDI, FMS Medical Systems, Amsterdam, The Netherlands in all subjects in dataset 1; CNAP, CNSystems Medizintechnik GmbH, Graz, Austria and Finapres Nova, FMS Medical Systems in dataset 2). The cuff was placed on the middle finger of the left hand and held at the level of the heart.

CBFV was measured in the MCA using transcranial Doppler ultrasonography (Doppler BoxX, DWL, Compumedics Germany GmbH, Singen, Germany in database 1; EMS-9PB, Delica, Shenzhen, China in database 2).

Expired end-tidal CO2 (EtCO2), carbon dioxide (CO2) concentration and respiratory rate (RR) were measured via a nasal cannula using a portable capnography monitor (RespSense™, NONIN, Plymouth, USA)

Protocol: after a resting epoch lasted at least 5 minutes, a controlled breathing session was initiated with 5-minute recordings at each of the respiratory rate: 6, 10 or 15 breaths/min (0.1 Hz, 0.17 Hz, and 0.25 Hz, respectively), guided by a digital metronome.


Data description



Type of database (database 1/database 2)

Type of device used for ABP measurement

Metadata including: sex (male M, female F), and age

Physiological parameters measured during controlled breathing, including:



 end-tidal carbon dioxide: ETCO2

Respiratory rate: RR

Carbon dioxide concentration: CO2

Heart rate: HR

Arterial blood pressure: ABP

Cerebral blood flow velocity: CBFV


Baroreflex function metrics, including:



Joint symbolical dynamics, estimated as the relative frequency of baroreflex-like word types (JSDsym) and the relative frequency of patterns that are opposed to baroreflex behaviour (JSDdiam) (Baumert et al., 2015)

Low component of Heart Rate Variability (HRV_LF; 0.04-0.15 Hz)

Baroreflex sensitivity estimated using a cross-correlation method (xBRS)


Cerebral autoregulation metrics, including TFA metrics:



coherence,

phase shift (PS)

gain



were provided for two frequency ranges: the very low-frequency range (VLF; 0.02-0.07 Hz) and the breathing frequency (BF; 0.08-0.12 Hz for 6 breaths/min; 0.15-0.19 Hz for 10 breaths/min; 0.23-0.27 Hz for 15 breaths/min). The mean values of the TFA metrics were analysed within these ranges.
DOI: 10.5281/zenodo.14185445
title: Next-Generation Sequencing Dataset of Adult Pilocytic Astrocytomas

description: Next-Generation Sequencing Dataset of Adult Pilocytic Astrocytomas

Pilocytic astrocytoma (PA) is a benign grade 1 glioma according to the World Health Organization (WHO), common in children but rare in adults, where it may have a worse prognosis. Pediatric PA is usually associated with dysregulation of the MAPK pathway, often involving BRAF alterations such as the KIAA1549::BRAF (K-B) fusion or the V600E mutation. This dataset contains molecular data of 28 cases of adult PA obtained by using gene-targeted next-generation sequencing (NGS).
DOI: 10.5281/zenodo.14185446
title: Next-Generation Sequencing Dataset of Adult Pilocytic Astrocytomas

description: Next-Generation Sequencing Dataset of Adult Pilocytic Astrocytomas

Pilocytic astrocytoma (PA) is a benign grade 1 glioma according to the World Health Organization (WHO), common in children but rare in adults, where it may have a worse prognosis. Pediatric PA is usually associated with dysregulation of the MAPK pathway, often involving BRAF alterations such as the KIAA1549::BRAF (K-B) fusion or the V600E mutation. This dataset contains molecular data of 28 cases of adult PA obtained by using gene-targeted next-generation sequencing (NGS).
DOI: 10.5281/zenodo.14626361
title: BIONANO-MSCA4U. Biological effects of AgNPs from Pseudomonas N5.12 on plants and soil microbial communities

description: These data correspond to characterization of the effects of silver nanoparticles coated with metabolites from the beneficial bacterium Pseudomonas N5.12 on plants and soil microbial communities. All data were obtained within the MSCA4Ukraine project (ID:101101923), funded by the European Union. The majority of the data are in comma-separated values (.csv) format and plain excel (.xls) and portable document format (.pdf).

Abbreviation of sample names: NP-roots – tomato seedlings inoculated via soil drench; NP-leaves – tomato seedlings sprayed on the leaves; silver – seedlings treated with 1 mM AgNO₃; control – without treatments.
DOI: 10.15468/dl.3p57za
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((9.2698 2.0276,9.1702 1.8496,17.9648 1.8496,17.9648 10.8496,8.9648 10.8496,8.9648 2.8113,8.9984 2.8234,9.2654 3.2175,9.4253 3.0783,9.2698 2.0276))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012764-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.14961752
title: Current and future distributions of main dermatitis-causing insects and risks of dermatitis across China

description: Occurrence records of Dendrolimus houi, Dendrolimus kikuchii, Dendrolimus punctatus, Dendrolimus spectabilis, Dendrolimus superans, Dendrolimus tabulaeformis, Euproctis similis, and Paederus fuscipes.
DOI: 10.5281/zenodo.15373659
title: SynthRAD2025 Grand Challenge dataset: Validation Input

description: Validation Input dataset for the SynthRAD2025 challenge

A detailed description of the SynhtRAD2025 challenge dataset is available here: 10.5281/zenodo.14918089 Each patient folder in the validation input dataset contains:



mr.mha or cbct.mha (depending on the task): preprocessed MR or CBCT image

mask.mha: Binary mask of the patient outline (dilated)


An overview folder within each anatomical region subfolder contains:



[task]_[anatomy]_parameters.xlsx: Imaging protocol details for each patient.

[task][anatomy][center][PatientID]_overview.png: A visualization of axial, coronal, and sagittal slices of CBCT/MR, CT, mask, and difference images.


 
description: Update 11.05.2025 (v2)

All CT and CBCT datasets are now properly clipped (-1024,3071).
DOI: 10.5281/zenodo.13983257
title: Structural insights into distinct mechanisms of RNA polymerase II and III recruitment to snRNA promoters - segmented EM density used in integrative modeling

description: segmented cryoEM map and derived gaussian mixture model used in the integrative modeling of the human SNAPc complex
DOI: 10.5281/zenodo.14697310
title: Direct device integration of single 1D nanoparticle assemblies; A magnetization reversal and magnetotransport study

description: Datasets used in the published paper (DOI:10.1088/1361-6528/adc1d0)
DOI: 10.5281/zenodo.14918505
title: SynthRAD2025 Grand Challenge dataset: Validation Input

description: Validation Input dataset for the SynthRAD2025 challenge

A detailed description of the SynhtRAD2025 challenge dataset is available here: 10.5281/zenodo.14918089 Each patient folder in the validation input dataset contains:



mr.mha or cbct.mha (depending on the task): preprocessed MR or CBCT image

mask.mha: Binary mask of the patient outline (dilated)


An overview folder within each anatomical region subfolder contains:



[task]_[anatomy]_parameters.xlsx: Imaging protocol details for each patient.

[task][anatomy][center][PatientID]_overview.png: A visualization of axial, coronal, and sagittal slices of CBCT/MR, CT, mask, and difference images.
DOI: 10.5281/zenodo.13983288
title: Structural insights into distinct mechanisms of RNA polymerase II and III recruitment to snRNA promoters - segmented EM density used in integrative modeling

description: segmented cryoEM map and derived gaussian mixture model used in the integrative modeling of the human SNAPc complex
DOI: 10.5281/zenodo.15133047
title: Shrivastava_et_al_2025
DOI: 10.15468/dl.rpyec3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynara cardunculus L.",
 "Country is Albania"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012765-250525065834625/datasets/export for details.
DOI: 10.15468/dl.5xue64
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lomatogonium carinthiacum (Wulfen) Rchb.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 175 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012766-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.actxrq
title: Occurrence Download

description: A dataset containing 1025 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Curtobacterium flaccumfaciens_B"
 ]
}

 The dataset includes 1025 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012767-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.27ncyx
title: Occurrence Download

description: A dataset containing 93428 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum tuberosum L."
 ]
}

 The dataset includes 93428 records from 681 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012747-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqma6n
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((9.7509 37.8496,8.9648 37.5879,8.9648 28.8496,17.9648 28.8496,17.9648 31.4107,15.9933 31.8399,15.7087 32.5876,15.3783 32.8575,13.447 33.3951,12.448 33.3201,11.5958 33.6971,11.3566 34.2292,11.7126 34.4306,11.838 34.8337,11.4958 36.0284,11.2722 36.2509,11.6203 36.7533,11.5006 37.3226,11.1934 37.5676,10.5795 37.5806,9.7509 37.8496))"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012768-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnjwcr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.9648 28.8496,8.9648 28.8496,8.9648 19.8496,17.9648 19.8496,17.9648 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012770-250525065834625/datasets/export for details.
DOI: 10.15468/dl.e7vggy
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynara cardunculus L.",
 "Country is Croatia"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012771-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.