cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pz2wss
title: Occurrence Download

description: A dataset containing 12816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((43.4541164285088 -23.5298435462298,43.4962600495613 -24.4608655949526,43.7701935864027 -24.6716739547928,43.798927873484 -24.8838644221572,43.8659745433403 -24.9568295174876,43.8870463538666 -25.1234444402559,44.0805238868804 -25.1650627614962,44.183967320373 -25.0800769429757,44.0958488399904 -24.9811416164302,43.9636711194166 -24.600282752084,43.814252826594 -24.4155217228812,43.7625311098477 -24.3928436745118,43.7242187270727 -23.6457108451058,43.7874341586515 -23.5544300043574,43.5594754811401 -23.4701144542225,43.4541164285088 -23.5298435462298))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12816 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024063-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fu3mkt
title: Occurrence Download

description: A dataset containing 2076 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Touit dilectissimus (P.L.Sclater & Salvin, 1871)"
 ]
}

 The dataset includes 2076 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050668-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqrjaa
title: Occurrence Download

description: A dataset containing 482 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliotropium petiolare (A.DC.) Govaerts"
 ]
}

 The dataset includes 482 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166750-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fq46we
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otus collari Lambert & Rasmussen, 1998"
 ]
}

 The dataset includes 36 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0397629-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zzrqf4
title: Occurrence Download

description: A dataset containing 380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agave salmiana Otto ex Salm-Dyck",
 "Country is Mexico"
 ]
}

 The dataset includes 380 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018479-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.948s3p
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Guichenotia anota C.F.Wilkins"
 ]
}

 The dataset includes 52 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166751-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tlz7t
title: Occurrence Download

description: A dataset containing 170986 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex aquifolium L."
 ]
}

 The dataset includes 170986 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018480-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uferk
title: Occurrence Download

description: A dataset containing 371 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Continent is North America",
 "Continent is South America",
 "Continent is Africa",
 "Continent is Oceania"
 ]
 },
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Boa constrictor Linnaeus, 1758"
 ]
}

 The dataset includes 371 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078108-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wkdma
title: Occurrence Download

description: A dataset containing 4836 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Scytalopus speluncae (Ménétriés, 1835)"
 ]
}

 The dataset includes 4836 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050686-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6mds3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ansonia khaochangensis Grismer, Wood, Aowphol, Cota, Grismer, Murdoch, Aguilar & Grismer, 2016"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040782-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbjjhk
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Schulhof A.-Lindgren-Schule (Elmshorn)"
 ]
}

 The dataset includes 66 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018480-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnq6m9
title: Occurrence Download

description: A dataset containing 1550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Plebeia frontalis (Friese, 1911)"
 ]
}

 The dataset includes 1550 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078112-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ksxh4
title: Occurrence Download

description: A dataset containing 197893 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 197893 records from 454 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015199-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpkab6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacquemontia cuspidata J.R.I.Wood"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166752-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvplts
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypsiboas albopunctatus (Spix, 1824)",
 "Country is Paraguay",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 57 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018481-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yprztj
title: Occurrence Download

description: A dataset containing 3261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Netherlands",
 "Issue is Occurrence status inferred from individual count",
 "TaxonKey is Bombus pratorum (Linnaeus, 1761)",
 "Year 2010-2020"
 ]
}

 The dataset includes 3261 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078113-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvv4vw
title: Occurrence Download

description: A dataset containing 3708 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Caprimulgus climacurus Vieillot, 1824"
 ]
}

 The dataset includes 3708 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050670-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7i48v
title: Occurrence Download

description: A dataset containing 170986 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex aquifolium L."
 ]
}

 The dataset includes 170986 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018482-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg2ksm
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Prochilodus lineatus (Valenciennes, 1837)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 327 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078116-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw8a27
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anneissia japonica (Müller, 1841)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040812-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypktgc
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Umgebung der Gesamtschule Winterhude (Hamburg)"
 ]
}

 The dataset includes 238 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018483-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a44kwm
title: Occurrence Download

description: A dataset containing 2558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "TaxonKey is Molothrus bonariensis (Gmelin, 1789)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2558 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078122-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdpb4d
title: Occurrence Download

description: A dataset containing 1280 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paenarthrobacter Busse, 2016"
 ]
}

 The dataset includes 1280 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050680-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygsxxf
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kielmeyera rufotomentosa Saddi"
 ]
}

 The dataset includes 39 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0166753-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kouy7e
title: Occurrence Download

description: A dataset containing 13393 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panicum maximum Jacq."
 ]
}

 The dataset includes 13393 records from 257 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018485-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14258808
title: A combined in silico approach to design peptide ligands with increased receptor-subtype selectivity

description: This Dataset has a corresponding publication:

"A combined in silico approach to design peptide ligands with increased receptor-subtype selectivity" ~ Adam Zech, Victoria Most, Anna Mutti, Passainte Ibrahim, Regine Heilbronn, Christoph Schwarzer, Peter W. Hildebrand, René Staritzbichler

Doi: 10.1016/j.jmb.2025.169006

The dataset has the results of the pipeline described in the paper:



md_simulations


includes approximately 7.5 microseconds of simulations in .xtc trajectories for DAMGO-(MOPr/KOPr/DOPr)-GiaCT complexes with their respective .pdb files for analysis. The .pdb files are the first frame of each of the simulations. Each simulation is the concatenation of three separate runs of approximately 2.5 microseconds of simulation. 



final_files 


has the files which are created by the script analyze_refinement.py. The file all_seq_scores.txt (corresponding to Table 1 of the paper) is a concatenation of the other seq*.txt files, while main_seq_scores.txt (corresponding to Fig. 4 of the paper) is a reduction of the files found in all_seq_scores.txt.



analyze_refinement.py


is the script which takes respective rescored_flexpepdock.txt and seq_pdb_score.txt files from corresponding kappa and mu mutations and creates the files found in final_files.



kappa_from_G3A/mu_from_G3A


has all the final design files starting from a DynB G3A mutant in the respective receptors. There are two directories (refinement and refinement_2) containing the .pdb structures of the design and there are the respective rescored_flexpepdock.txt/rescored_flexpepdock_2.txt and seq_pdb_score.txt/seq_pdb_score_2.txt files scoring these designs.



kappa_from_WT/mu_from_WT:


has all the final design files starting from a DynB WT in the respective receptors. There is one directory (relaxed) containing the .pdb structures of the design and there are the respective rescored_flexpepdock.txt and seq_pdb_score.txt files scoring these designs.
DOI: 10.5281/zenodo.14258809
title: A combined in silico approach to design peptide ligands with increased receptor-subtype selectivity

description: This Dataset has a corresponding publication:

"A combined in silico approach to design peptide ligands with increased receptor-subtype selectivity" ~ Adam Zech, Victoria Most, Anna Mutti, Passainte Ibrahim, Regine Heilbronn, Christoph Schwarzer, Peter W. Hildebrand, René Staritzbichler

Doi: 10.1016/j.jmb.2025.169006

The dataset has the results of the pipeline described in the paper:



md_simulations


includes approximately 7.5 microseconds of simulations in .xtc trajectories for DAMGO-(MOPr/KOPr/DOPr)-GiaCT complexes with their respective .pdb files for analysis. The .pdb files are the first frame of each of the simulations. Each simulation is the concatenation of three separate runs of approximately 2.5 microseconds of simulation. 



final_files 


has the files which are created by the script analyze_refinement.py. The file all_seq_scores.txt (corresponding to Table 1 of the paper) is a concatenation of the other seq*.txt files, while main_seq_scores.txt (corresponding to Fig. 4 of the paper) is a reduction of the files found in all_seq_scores.txt.



analyze_refinement.py


is the script which takes respective rescored_flexpepdock.txt and seq_pdb_score.txt files from corresponding kappa and mu mutations and creates the files found in final_files.



kappa_from_G3A/mu_from_G3A


has all the final design files starting from a DynB G3A mutant in the respective receptors. There are two directories (refinement and refinement_2) containing the .pdb structures of the design and there are the respective rescored_flexpepdock.txt/rescored_flexpepdock_2.txt and seq_pdb_score.txt/seq_pdb_score_2.txt files scoring these designs.



kappa_from_WT/mu_from_WT:


has all the final design files starting from a DynB WT in the respective receptors. There is one directory (relaxed) containing the .pdb structures of the design and there are the respective rescored_flexpepdock.txt and seq_pdb_score.txt files scoring these designs.
DOI: 10.15468/dl.nuhwwy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Parnopes grandior (Pallas, 1771)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is Ukraine"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133444-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uy6rzr
title: Occurrence Download

description: A dataset containing 1563963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((17.23 83.40, -47.00 83.40, -47.00 48.50, 17.23 48.50, 17.23 83.40))",
 "Year is less than 1900"
 ]
}

 The dataset includes 1563963 records from 953 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000539-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hjsjc
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nevada N.H.Holmgren"
 ]
}

 The dataset includes 83 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0403299-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9kfsav
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Anthophora fulvipes Eversmann, 1846",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is Ukraine"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133462-230530130749713/datasets/export for details.
DOI: 10.15468/dl.n3jsth
title: Occurrence Download

description: A dataset containing 1009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gyrophanopsis polonensis (Bres.) Stalpers & P.K.Buchanan, Granulobasidium vellereum (Ellis & Cragin) Jülich)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1009 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242903-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8d99hu
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola barroetana W.Schaffn. ex Hemsl."
 ]
}

 The dataset includes 157 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031540-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mckran
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brassica fruticulosa var. mauritanica Coss."
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044834-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.