cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14251122
title: Single-cell transcriptome atlas of lamprey exploring Natterin induced white adipose tissue browning: Code and processed scRNA-seq data

description: This repository contains code and processed scRNA-seq data of lamprey, which constructed a comprehensive cell atlas comprising 604,460 cells/nuclei and 70 cell types from 14 tissues.

 

lamprey_atlas.raw.h5ad:



Python data set (.h5ad) containing raw counts matrix from all tissues and libraries.


lamprey_atlas.scanpy_merge.h5ad:



Python data set (.h5ad) containing scanpy processed matrix, used in projection of cells from all tissues into shared UMAP space. Only highly-variable genes calculated by scanpy are included.


immune.h5ad:



Python data set (.h5ad) containing scanpy processed matrix, used in re-clustering of immune cells. Only highly-variable genes calculated by scanpy are included.


pancreas.evo.rds:



R data set (.rds) containing integrated data of intestine, liver, pancreas from human and mouse, as well as intestine and liver from lamprey. 


lamprey-single-cell-atlas-1.0.0.zip:



Code used in processing of scRNA-seq data.
DOI: 10.5281/zenodo.14338297
title: Single-cell transcriptome atlas of lamprey exploring Natterin induced white adipose tissue browning: Code and processed scRNA-seq data

description: This repository contains code and processed scRNA-seq data of lamprey, which constructed a comprehensive cell atlas comprising 604,460 cells/nuclei and 70 cell types from 14 tissues.

 

lamprey_atlas.raw.h5ad:



Python data set (.h5ad) containing raw counts matrix from all tissues and libraries.


lamprey_atlas.scanpy_merge.h5ad:



Python data set (.h5ad) containing scanpy processed matrix, used in projection of cells from all tissues into shared UMAP space. Only highly-variable genes calculated by scanpy are included.


immune.h5ad:



Python data set (.h5ad) containing scanpy processed matrix, used in re-clustering of immune cells. Only highly-variable genes calculated by scanpy are included.


pancreas.evo.rds:



R data set (.rds) containing integrated data of intestine, liver, pancreas from human and mouse, as well as intestine and liver from lamprey. 


lamprey-single-cell-atlas-1.0.0.zip:



Code used in processing of scRNA-seq data.
DOI: 10.17632/xbn3smxjgr.1
title: Partition analysis data-attitude

description: This dataset is the responding time and results of an implicit attitude measure for adolescents. The purpose is to use partition analysis to identify participants with homogeneity for data analysis.
DOI: 10.15468/dl.j4gnm7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Limanda herzensteini Jordan & Snyder, 1901",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026849-241126133413365/datasets/export for details.
DOI: 10.17632/rthwgtb5d5.1
title: Socio-Demographic Profile

description: The socio-demographic profile refers to a detailed description of the characteristics and attributes of individuals or populations within a specific group or community. It combines both social and demographic factors to create a comprehensive understanding of people's backgrounds, lifestyles, and positions within society. These profiles are often used in research, marketing, policy-making, and various social sciences to analyze trends and patterns within populations.
DOI: 10.15468/dl.r6jstn
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudopleuronectes yokohamae (Günther, 1877)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 320 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026850-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27172974.v3
title: Supplementary Table 1 Estradiol.docx

description: Rat serum estradiol levels at control, hindlimb suspended, reambulation/recovery and reambulation/recovery with mechanotherapy.
DOI: 10.15468/dl.fxaycv
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pleuronectes yokohamae Günther, 1877",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026851-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27917803
title: Origin, pathogenicity, and transmissibility of a human isolated influenza A(H10N3) virus from China

description: Subtype H10 viruses are known to infect humans in Africa, Oceania, and Asia. In 2021, 2022, and recently in April 2024, a novel H10N3 subtype avian influenza virus was found cause human infection with severe pneumonia. Herein, we comprehensively studied the phylogenetic evolution and biological characteristics of the newly emerged influenza A(H10N3) virus. We found that the human isolated H10N3 virus was generated in early 2019 in domestic poultry. The viruses bound to salic acid α2, 3 receptors, indicating their insufficient ability to infect humans. Although a low pathogenic avian influenza virus, the human isolated H10N3 virus exhibited robust pathogenicity in both BALB/c and C57BL/6 mice, with MLD<sub>50</sub> 1000 times higher than a homologous environmental isolate. The human isolated H10N3 also showed respiratory droplet transmissibility in ferrets. Considering the continuous circulation in avian populations and repeated transmission to humans, strengthened surveillance of H10 subtype viruses in poultry should be put into effect.
DOI: 10.6084/m9.figshare.27917803.v1
title: Origin, pathogenicity, and transmissibility of a human isolated influenza A(H10N3) virus from China

description: Subtype H10 viruses are known to infect humans in Africa, Oceania, and Asia. In 2021, 2022, and recently in April 2024, a novel H10N3 subtype avian influenza virus was found cause human infection with severe pneumonia. Herein, we comprehensively studied the phylogenetic evolution and biological characteristics of the newly emerged influenza A(H10N3) virus. We found that the human isolated H10N3 virus was generated in early 2019 in domestic poultry. The viruses bound to salic acid α2, 3 receptors, indicating their insufficient ability to infect humans. Although a low pathogenic avian influenza virus, the human isolated H10N3 virus exhibited robust pathogenicity in both BALB/c and C57BL/6 mice, with MLD<sub>50</sub> 1000 times higher than a homologous environmental isolate. The human isolated H10N3 also showed respiratory droplet transmissibility in ferrets. Considering the continuous circulation in avian populations and repeated transmission to humans, strengthened surveillance of H10 subtype viruses in poultry should be put into effect.
DOI: 10.6084/m9.figshare.27994094
title: Optimal Multitask Linear Regression and Contextual Bandits under Sparse Heterogeneity

description: Large and complex datasets are often collected from several, possibly heterogeneous sources. Multitask learning methods improve efficiency by leveraging commonalities across datasets while accounting for possible differences among them. Here, we study multitask linear regression and contextual bandits under <i>sparse heterogeneity</i>, where the source/task-associated parameters are equal to a global parameter plus a sparse task-specific term. We propose a novel two-stage estimator called MOLAR that leverages this structure by first constructing a covariate-wise weighted median of the task-wise linear regression estimates and then shrinking the task-wise estimates towards the weighted median. Compared to task-wise least squares estimates, MOLAR improves the dependence of the estimation error on the data dimension. Extensions of MOLAR to generalized linear models and constructing confidence intervals are discussed in the paper. We then apply MOLAR to develop methods for sparsely heterogeneous multitask contextual bandits, obtaining improved regret guarantees over single-task bandit methods. We further show that our methods are minimax optimal by providing a number of lower bounds. Finally, we support the efficiency of our methods by performing experiments on both synthetic data and the PISA dataset on student educational outcomes from heterogeneous countries.
DOI: 10.15468/dl.saegey
title: Occurrence Download

description: A dataset containing 14505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Buteo swainsoni Bonaparte, 1838"
 ]
}

 The dataset includes 14505 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026852-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.km9mjd
title: Occurrence Download

description: A dataset containing 646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomber japonicus Houttuyn, 1782",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 646 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026854-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.875jnz
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Russian Federation, Ukraine, Japan, Korea, Republic of, China, South Africa)",
 "TaxonKey is Agrilus planipennis Fairmaire, 1888"
 ]
}

 The dataset includes 73 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026856-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpfx5z
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scomber colias Gmelin, 1789",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026857-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14332706
title: Dataset for manuscript "Prominent grazing rates and feeding preferences of an abundant exotic benthic herbivore in the Mediterranean Sea"

description: Dataset associated to manuscript "Prominent grazing rates and feeding preferences of an abundant exotic benthic herbivore in the Mediterranean Sea"

One excel file with 6 sheets as follows:

Abundance of individuals in the field * Data on consumption used for the Hotelling´s t-test * Additional data on consumption based on several ecological variables * Individual measurements * Inorganic carbon content on blades * Organic carbon and nitrogen content  on blades * Phosphorous content  on blades
DOI: 10.5281/zenodo.14332707
title: Dataset for manuscript "Prominent grazing rates and feeding preferences of an abundant exotic benthic herbivore in the Mediterranean Sea"

description: Dataset associated to manuscript "Prominent grazing rates and feeding preferences of an abundant exotic benthic herbivore in the Mediterranean Sea"

One excel file with 6 sheets as follows:

Abundance of individuals in the field * Data on consumption used for the Hotelling´s t-test * Additional data on consumption based on several ecological variables * Individual measurements * Inorganic carbon content on blades * Organic carbon and nitrogen content  on blades * Phosphorous content  on blades
DOI: 10.15468/dl.suytwj
title: Occurrence Download

description: A dataset containing 60588 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is one of (CAN.2.14.4_1)"
 ]
}

 The dataset includes 60588 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026855-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8r2dt
title: Occurrence Download

description: A dataset containing 1842 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Revealing migratory behaviour of South African leatherback turtles"
 ]
}

 The dataset includes 1842 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026858-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zc6qr9
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pagrus major (Temminck & Schlegel, 1843)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 645 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026859-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxe3kh
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Acacia auriculiformis A.Cunn. ex Benth."
 ]
}

 The dataset includes 292 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026861-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vv272n
title: Occurrence Download

description: A dataset containing 1591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is one of (ff90b050-c256-11db-b71b-b8a03c50a862, 2b8e48b0-812d-11de-86fe-b8a03c50a862, 8a471700-4ce8-11db-b80e-b8a03c50a862, c0dc3c80-23f9-11dc-98d1-b8a03c50a862, 8edbbde0-055e-11d8-b850-b8a03c50a862, b459e790-0d3c-11d9-8431-b8a03c50a862, ccd1ddc0-6c21-11de-8224-b8a03c50a862, b554c320-0560-11d8-b851-b8a03c50a862, bc092ff0-02e4-11dc-991f-b8a03c50a862)",
 "TaxonKey is Mephitis macroura Lichtenstein, 1832"
 ]
}

 The dataset includes 1591 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026860-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tuy7k
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthopagrus taiwanensis Iwatsuki & Carpenter, 2006",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026862-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjsdgy
title: Occurrence Download

description: A dataset containing 7318499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Chile",
 "DatasetKey is one of (EOD – eBird Observation Dataset, Programa de fotomonitoreo de objetos de conservación y amenazas en el Sistema Nacional de Áreas Protegidas (SNAP), Base de datos biogeográfica del Fondo de Investigación Pesquera y de Acuicultura (1999-2019), Subsecretaría de Pesca y Acuicultura, iNaturalist Research-grade Observations, Objetos de conservación del Área Marina Costera Protegida de Múltiples Usos, Pitipalena-Añihue, NMNH Extant Specimen Records (USNM, US), Wild bees of Chile - The PUCV collection, Global soil organisms, MICROBIS database, Proyecto fortalecimiento y desarrollo de instrumentos para el manejo, prevención y control del Castor (Castor canadensis), una especie exótica invasora en la Patagonia Chilena.)"
 ]
}

 The dataset includes 7318499 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026853-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mj7ttb
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.97048 14.13672,-86.49266 14.13672,-86.49266 15.52911,-89.97048 15.52911,-89.97048 14.13672))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chironectes minimus (Zimmermann, 1780)"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026863-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jvn3s8
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chrysophrys major Temminck & Schlegel, 1843",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026864-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27994085
title: 3mm Untreated Quad VML Time Course Lipidomics Raw Data

description: Lipidomics raw data for assessing pro-inflammatory and pro-resolving lipid mediators in response to critical-sized VML injury in murine quadriceps muscle.
DOI: 10.6084/m9.figshare.27994085.v1
title: 3mm Untreated Quad VML Time Course Lipidomics Raw Data

description: Lipidomics raw data for assessing pro-inflammatory and pro-resolving lipid mediators in response to critical-sized VML injury in murine quadriceps muscle.
DOI: 10.15468/dl.gqvh9g
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pagrus auratus (Forster, 1801)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026865-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2d6yxh
title: CCDC 2211227: Experimental Crystal Structure Determination

description: Related Article: Subhradeep Dutta, Jae Hyun Kim, Kamal Bhatt, Dillon R. L. Rickertsen, Khalil A. Abboud, Ion Ghiviriga, Daniel Seidel|2024|Angew.Chem.,Int.Ed.|63|e202313247|doi:10.1002/anie.202313247
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gttpt
title: CCDC 2288937: Experimental Crystal Structure Determination

description: Related Article: Takashi Harimoto, Tomoki Tadokoro, Soichiro Sugiyama, Takanori Suzuki, Yusuke Ishigaki|2024|Angew.Chem.,Int.Ed.|63|e202316753|doi:10.1002/anie.202316753
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gttqv
title: CCDC 2288938: Experimental Crystal Structure Determination

description: Related Article: Takashi Harimoto, Tomoki Tadokoro, Soichiro Sugiyama, Takanori Suzuki, Yusuke Ishigaki|2024|Angew.Chem.,Int.Ed.|63|e202316753|doi:10.1002/anie.202316753
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gttrw
title: CCDC 2288939: Experimental Crystal Structure Determination

description: Related Article: Takashi Harimoto, Tomoki Tadokoro, Soichiro Sugiyama, Takanori Suzuki, Yusuke Ishigaki|2024|Angew.Chem.,Int.Ed.|63|e202316753|doi:10.1002/anie.202316753
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gttsx
title: CCDC 2288940: Experimental Crystal Structure Determination

description: Related Article: Takashi Harimoto, Tomoki Tadokoro, Soichiro Sugiyama, Takanori Suzuki, Yusuke Ishigaki|2024|Angew.Chem.,Int.Ed.|63|e202316753|doi:10.1002/anie.202316753
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gxtt1
title: CCDC 2291824: Experimental Crystal Structure Determination

description: Related Article: Anton Kudashev, Stefania Vergura, Marco Zuccarello, Thomas Bürgi, Olivier Baudoin|2024|Angew.Chem.,Int.Ed.|63|e202316103|doi:10.1002/anie.202316103
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gyhsq
title: CCDC 2292474: Experimental Crystal Structure Determination

description: Related Article: Junjie Meng, Hui He, Qianru Liu, Hanhong Xu, Huicai Huang, Shao-Fei Ni, Zhaodong Li|2024|Angew.Chem.,Int.Ed.|63|e202315092|doi:10.1002/anie.202315092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.