cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/f4ydex
title: Horned and spiky: Tegotettix derijei sp. n. (Orthoptera: Tetrigidae) is a peculiar new pygmy grasshopper species from Mindanao

description: This dataset contains the digitized treatments in Plazi based on the original journal article Patano, Romeo R., Mohagan, Alma B., Tumbrinck, Josef, Amoroso, Victor B., Skejo, Josip (2021): Horned and spiky: Tegotettix derijei sp. n. (Orthoptera: Tetrigidae) is a peculiar new pygmy grasshopper species from Mindanao. Zootaxa 4933 (2): 198-210, DOI: https://doi.org/10.11646/zootaxa.4933.2.2
DOI: 10.6084/m9.figshare.14075372
title: RNAseq_Goodwin et al_Feb2021

description: RNAseq data supporting the Goodwin et al manuscript
DOI: 10.6084/m9.figshare.14075372.v11
title: RNAseq_Goodwin et al_Feb2021

description: RNAseq data supporting the Goodwin et al manuscript
DOI: 10.6084/m9.figshare.13489323.v1
title: Development of a 6-gene model for COVID-19 diagnosis and treatment based on the blood leukocytes sequencing dataset of patients with SARS-CoV-2 infection

description: The coronavirus disease 2019 (COVID-19) is a global epidemic disease caused by a novel virus, SARS-CoV-2, causing serious adverse effects on human health. The development of more effective methods for the diagnosis and treatment of COVID-19 is of great significance to control the spread of the epidemic. In this study, we collected the blood leukocyte sequencing dataset of COVID-19 patients from the GEO database and obtained differentially expressed genes (DEGs). We further analyzed these DEGs by protein-protein interaction (PPI) analysis and gene ontology (GO) enrichment analysis and obtained the DEGs closely related to SARS-CoV-2 infection. Then, we constructed a 6-gene model, composed of 6 genes (IFIT3, OASL, USP18, XAF1, IFI27, and EPSTI1) by logistic regression analysis, and the area under the ROC curve (AUC) was calculated. The AUC of the training group, testing group, and entire group was 0.930, 0.914, and 0.921, respectively, and this model combined with ferritin and fibrinogen in the diagnosis of COVID-19 can achieve better diagnostic efficiency (AUC=0.976). The results of expression analysis showed that these six genes were highly expressed in patients with COVID-19 and positively correlated with the expression of SARS-CoV-2 invasion related genes (ACE2, TMPRSS2, CTSB, and CTSL). The risk score calculated by this model was also positively correlated with the expression of TMPRSS2, CTSB, and CTSL, indicating that the six genes were closely related to SARS-CoV-2 infection. In conclusion, our study comprehensively analyzed the functions of DEGs in blood leukocytes of COVID-19 patients and constructed a 6-gene model that may contribute to the diagnosis of COVID-19, which contributes to the development of new diagnostic and therapeutic ideas for COVID-19. Also, these six genes may be therapeutic targets for COVID-19.
DOI: 10.15468/qjfj3b
title: Revision of the Litoria watjulumensis (Anura: Pelodryadidae) group from the Australian monsoonal tropics, including the resurrection of L. spaldingi

description: This dataset contains the digitized treatments in Plazi based on the original journal article Donnellan, Stephen C., Catalano, Sarah R., Pederson, Stephen, Mitchell, Kieren J., Suhendran, Aidan, Price, Luke C., Doughty, Paul, Richards, Stephen J. (2021): Revision of the Litoria watjulumensis (Anura: Pelodryadidae) group from the Australian monsoonal tropics, including the resurrection of L. spaldingi. Zootaxa 4933 (2): 211-240, DOI: https://doi.org/10.11646/zootaxa.4933.2.3
DOI: 10.5517/ccdc.csd.cc236jhc
title: CCDC 1942692: Experimental Crystal Structure Determination

description: Related Article: Gonçalo Lopes, Vasco Gama, Dulce Simão, Isabel C. Santos, Elsa B. Lopes, Laura C. J. Pereira, Manuel Almeida, Sandra Rabaça|2019|CrystEngComm|21|7489|doi:10.1039/C9CE01214A
DOI: 10.5517/ccdc.csd.cc236jjd
title: CCDC 1942693: Experimental Crystal Structure Determination

description: Related Article: Gonçalo Lopes, Vasco Gama, Dulce Simão, Isabel C. Santos, Elsa B. Lopes, Laura C. J. Pereira, Manuel Almeida, Sandra Rabaça|2019|CrystEngComm|21|7489|doi:10.1039/C9CE01214A
DOI: 10.5281/zenodo.4487072
title: AURSAD: Universal Robot Screwdriving Anomaly Detection Dataset

description: Dataset containing normal and anomalous operation measurments from UR-3e robot and OnRobot Screwdriver. The dataset contains 2045 samples in total. The robot was sampled with frequency of 100 Hz. <pre>| Type | Label | Samples | % | |--------------------------|-------|---------|-------| | Normal operation | 0 | 1420 | 69.44 | | Damaged screw | 1 | 221 | 10.81 | | Extra assembly component | 2 | 183 | 8.95 | | Missing screw | 3 | 218 | 10.65 | | Damaged thread samples | 4 | 3 | 0.15 | </pre> Additionally, there are 2049 supplementary samples describing the loosening/screw picking motion, labeled 5. The data is in continuous form with every event having its own label. Events are grouped in samples. For more detail please look into the technical report: https://arxiv.org/abs/2102.01409. The dataset has an accompanying Python library for easier data loading and manipulation: https://pypi.org/project/aursad/.
DOI: 10.6084/m9.figshare.14102567
title: PICS_dataset.xls

description: Dataset of the original and after multiple imputation.
DOI: 10.15468/yaehpf
title: Mangelia (Gastropoda, Conoidea) species of the Turkish coasts with description of Mangelia vanaartseni sp. nov.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Öztürk, Bilal (2021): Mangelia (Gastropoda, Conoidea) species of the Turkish coasts with description of Mangelia vanaartseni sp. nov. Zootaxa 4933 (2): 241-262, DOI: https://doi.org/10.11646/zootaxa.4933.2.4
DOI: 10.23700/3724-2q62
title: SITES AquaNet - Test Experiment 2017

description: The 2017 test experiment was conducted in the SITES AquaNet mesocosm facilities in five different lakes located near a SITES research station in Sweden: Feresjön (Asa Research Station), Bolmen (Bolmen Research Station, a SITES associated station with Southern Sweden Water Supply and Sweden Water Research as funding bodies), Erken (Erken Laboratory), Erssjön  (Skogaryd Research Catchment), Stortjärn (Svartberget Research Station). The experiment was performed in two different periods (early and late summer), each consisting of a 4x4 factorial design of pulse and press disturbances ("C" = controls, "F" = fish pulse, "L" = light reduction press, "FL" = fish pulse and light reduction press combined) with four replicates per treatment.
DOI: 10.15468/aawzyy
title: A new macromedusa from the coast of Mozambique: Aurelia mozambica sp. nov (Scyphozoa: Ulmaridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Brown, Michael, Scorrano, Simonetta, Kuplik, Zafrir, Kuyper, Drikus, Ras, Verena, Thibault, Delphine, Engelbrecht, Adriaan (2021): A new macromedusa from the coast of Mozambique: Aurelia mozambica sp. nov (Scyphozoa: Ulmaridae). Zootaxa 4933 (2): 263-276, DOI: https://doi.org/10.11646/zootaxa.4933.2.5
DOI: 10.14459/2020mp1596617
title: Experimental Investigation of Shock-Induced Tandem Droplet Breakup

description: This dataset is related to the publication "Experimental Investigation of Shock-Induced Tandem Droplet Breakup" and contains images, videos and figure data files. For deeper insights into the dynamics of dense sprays, the present experimental work investigates the shock-induced breakup of two identically-sized water droplets in tandem formation. The breakup process is visualized in a shadowgraph system and captured by an ultra-high-speed camera. The experimental Weber number ranges from 13 to 180 and the separation distance between droplets is varied between 1.2 and 10.5 times of the droplet diameter. While the tandem formation exerts marginal influence on the lead droplet, the breakup intensity of the trailing droplet is consistently attenuated as the separation distance falls below critical levels. The time of initial deformation is postponed, the maximum cross-stream diameter is reduced, and the mean drag coefficient is lowered. These effects are more profound at lower Weber numbers and closer separation distances. The attenuation of the breakup intensity is also reflected by the formation of smaller bags in bag and bag-and-stamen morphologies and by the narrower cross-stream dispersion of fragments in multibag and shear stripping morphologies. When positioned in close proximity to the lead droplet, the trailing droplet fails to follow the conventional breakup morphologies. Instead, it either punctures or coalesces with the lead droplet.
DOI: 10.15468/cyw942
title: ‘ Nemacheilus’ argyrogaster, a new species of loach from southern Laos (Teleostei: Nemacheilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kottelat, Maurice (2021): ‘ Nemacheilus’ argyrogaster, a new species of loach from southern Laos (Teleostei: Nemacheilidae). Zootaxa 4933 (2): 277-288, DOI: https://doi.org/10.11646/zootaxa.4933.2.6
DOI: 10.5281/zenodo.3553692
title: Zea mays biparental RIL population - growth chamber phenotyping data

description: MIAPPE compliant ISA-tab files of the Zea mays B73xH99 RIL population. This includes final leaf size and whole shoot traits at the seedling stage, complemented with measurements capturing growth dynamics, and cellular measurements.
DOI: 10.5281/zenodo.3553691
title: Zea mays biparental RIL population - growth chamber phenotyping data

description: MIAPPE compliant ISA-tab files of the Zea mays B73xH99 RIL population. This includes final leaf size and whole shoot traits at the seedling stage, complemented with measurements capturing growth dynamics, and cellular measurements.
DOI: 10.15468/pwxe5f
title: A new species of Adelius Haliday (Hymenoptera, Braconidae, Cheloninae) from the Afrotropical Region

description: This dataset contains the digitized treatments in Plazi based on the original journal article Timóteo, Ferreira Manuel, Shimbori, Eduardo Mitio, Ferreira, João Pascoal Da Silva, José, Almeida Francisco, Almeida, Luis Felipe Ventura De, Penteado-Dias, Angélica Maria (2021): A new species of Adelius Haliday (Hymenoptera, Braconidae, Cheloninae) from the Afrotropical Region. Zootaxa 4933 (2): 289-294, DOI: https://doi.org/10.11646/zootaxa.4933.2.7
DOI: 10.6084/m9.figshare.14102564
title: Anxiety/Fear, Media Usage and Physician–Patient Trust During the COVID-19

description: Dataset of demographic information of public's anxiety/fear, media usage time and attention, and physician-patient trust during COVID-19
DOI: 10.5281/zenodo.3553749
title: Zea mays MAGIC RIL population - field trial phenotyping data

description: MIAPPE compliant ISA-tab files of the Zea mays MAGIC RIL population derived from eight genetically diverse founder lines.
DOI: 10.5281/zenodo.3553748
title: Zea mays MAGIC RIL population - field trial phenotyping data

description: MIAPPE compliant ISA-tab files of the Zea mays MAGIC RIL population derived from eight genetically diverse founder lines.
DOI: 10.5281/zenodo.3553768
title: Zea mays MAGIC RIL population - growth chamber phenotyping data

description: MIAPPE compliant ISA-tab files of 197 recombinant inbred lines of two different maize (Zea mays) populations including indepth phenotyping of the fourth leaf at later stages of development.
DOI: 10.5281/zenodo.3553767
title: Zea mays MAGIC RIL population - growth chamber phenotyping data

description: MIAPPE compliant ISA-tab files of 197 recombinant inbred lines of two different maize (Zea mays) populations including indepth phenotyping of the fourth leaf at later stages of development.
DOI: 10.6084/m9.figshare.14102615.v1
title: Heerlen-Aachen Steel Microstructure Labels

description: This collection extends the referenced dataset with deep learning labels of M/A islands. The images can be accessed via the following reference: <br>https://figshare.com/s/99499b4ea943cae6e11e<br>
DOI: 10.6084/m9.figshare.14102615
title: Heerlen-Aachen Steel Microstructure Labels

description: This collection extends the referenced dataset with deep learning labels of M/A islands. The images can be accessed via the following reference: <br>https://figshare.com/s/99499b4ea943cae6e11e<br>
DOI: 10.7277/bn52-0411
title: A New Perspective on the Tensile Strength of Lap Splices in Reinforced Concrete Members

description: &lt;p&gt; &lt;/p&gt; &lt;table&gt; &lt;tbody&gt; &lt;tr&gt; &lt;td width="35%"&gt;&lt;a href="/app/site/resources/2014/10/00056/No5.jpg"&gt;&lt;img alt="image" src="/app/site/resources/2014/10/00056/No5.jpg" style="width:550px" /&gt;&lt;/a&gt; &lt;p&gt; &lt;/p&gt; &lt;/td&gt; &lt;td width="65%"&gt;Current U.S. design provisions for lap splices of deformed bars in tension were developed primarily from tests conducted on beams with lap lengths not exceeding 40 bar diameters. But the provisions often require splices to be longer than 40 bar diameters. Recent structural failures have indicated the vulnerability of lap splices with length-to-bar-diameter ratios equal to or exceeding 40. In this study, the tensile strength of unconfined deformed-bar lap splices with different lengths is reexamined. The focus is on lap splices with length-to-bar-diameter ratios of 40 or more. The tensile strength of lap splices in configurations resembling those observed to have splice failures in the field is also examined. &lt;p&gt; &lt;/p&gt; Three series of tests (with a total of forty-five specimens) were conducted on specimens with lap lengths varying from 20 to 85 bar diameters. In series one, twenty-seven prismatic coupons were tested monotonically to failure in tension. In the second and third series, a total of eighteen beams were tested to failure. The beam lap splices were located in a region of constant moment. &lt;p&gt; &lt;/p&gt; The results in this study indicated that increasing the length of a lap splice beyond 45 bar diameters was an inefficient way to increase the strength of the splice. The results also indicated that a mean unit bond strength of 5&radic;f&#39;c (in psi) is not a lower bound, as suggested by current design provisions, to the strength of unconfined deformed-bar lap splices with a minimum clear cover of 1 bar diameter and a minimum clear spacing between bars of 2 bar diameters. &lt;p&gt; &lt;/p&gt; To address these issues, a new perspective on the tensile strength of unconfined lap splices is explored. It is suggested that, rather than setting a lower bound to the mean unit bond strength for design, an upper bound of 900&radic;f&#39;c (in psi) should be set for the maximum steel stress that can be developed in unconfined deformed-bar lap splices&lt;/td&gt; &lt;/tr&gt; &lt;/tbody&gt; &lt;/table&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.5281/zenodo.4317480
title: Absolute and arbitrary orientation of single molecule shapes

description: All software for the kinetic, thermodynamic, and EM simulations associated with the journal paper are presented here. Additionally the AFM images and codes for analyzing the orientation of right triangles as well as e-beam and DNA origami design files associated with the paper is included.
DOI: 10.5281/zenodo.4317479
title: Absolute and arbitrary orientation of single molecule shapes

description: All software for the kinetic, thermodynamic, and EM simulations associated with the journal paper are presented here. Additionally the AFM images and codes for analyzing the orientation of right triangles as well as e-beam and DNA origami design files associated with the paper is included.
DOI: 10.6084/m9.figshare.8075834
title: Variations in microbiome composition of sewer biofilms due to ferrous and ferric iron dosing

description: During transport of wastewater in force mains, sulphide and possibly methane formation take place due to prokaryotic activity. Sulphide has several detrimental effects and addition of ferrous or ferric iron for abatement by precipitation is commonly applied. Precipitation stoichiometry and efficiency of this process have been investigated in detail. However, it is largely unknown how ferrous and ferric iron influence prokaryotic populations of sewer biofilms. The microbiomes of iron-treated force main biofilms were, together with an untreated control, examined by sequencing of the 16S rDNA V3+ V4 regions. Differences in distribution and abundance of several bacterial and archaeal genera were observed, indicating that treatment with ferrous and ferric iron for sulphide abatement differentially changed sewer force main microbiomes. Furthermore, differences at the functional level (KEGG orthologs, KOs) indicate that ferrous and ferric iron treatment possibly can decrease methane formation, whereas functions related to dissimilatory sulphate reduction seemed unaffected.
DOI: 10.6084/m9.figshare.8075834.v1
title: Variations in microbiome composition of sewer biofilms due to ferrous and ferric iron dosing

description: During transport of wastewater in force mains, sulphide and possibly methane formation take place due to prokaryotic activity. Sulphide has several detrimental effects and addition of ferrous or ferric iron for abatement by precipitation is commonly applied. Precipitation stoichiometry and efficiency of this process have been investigated in detail. However, it is largely unknown how ferrous and ferric iron influence prokaryotic populations of sewer biofilms. The microbiomes of iron-treated force main biofilms were, together with an untreated control, examined by sequencing of the 16S rDNA V3+ V4 regions. Differences in distribution and abundance of several bacterial and archaeal genera were observed, indicating that treatment with ferrous and ferric iron for sulphide abatement differentially changed sewer force main microbiomes. Furthermore, differences at the functional level (KEGG orthologs, KOs) indicate that ferrous and ferric iron treatment possibly can decrease methane formation, whereas functions related to dissimilatory sulphate reduction seemed unaffected.
DOI: 10.6084/m9.figshare.5472322.v1
title: A case study of life cycle impacts of small-scale fishing techniques in Thailand

description: Fish provides an important source of protein, especially in developing countries, and the amounts of fish consumed are increasing worldwide (mostly from aquaculture). More than half of all marine fish are caught by small-scale fishery operations. However, no life cycle assessment (LCA) of small-scale fisheries and no LCA of marine fishery operations in Asia (Thailand) exists today. We perform LCAs to compare the impacts of three different fishing techniques: crab gill-nets, squid traps, and fish traps. Primary data sourced from four different fishers were used. We distinguished the life cycle inventories for three different seasons (northeast monsoon, southwest monsoon and pre-monsoon), since the time spent on the water and catch varied significantly between the seasons. Our results showed the largest impacts from artisanal fishing operations affect climate change, human toxicity, and fossil and metal depletion. Our results are, in terms of global warming potential, comparable with other artisanal fisheries. Between different fishing operations, impacts vary between a factor of 2 (for land transformation impacts) and up to a factor of more than 20 (fossil fuel depletion and marine eutrophication). This shows that the way in which operations are performed have a very strong influence on results. Seasonality plays a relevant role for the assessment. Our results highlight that it is important to account for seasonal aspects in LCAs. We encourage a continual effort for collecting and modeling inventory processes, as well as making them available, in order to guarantee that LCA studies outside of Europe can be performed more easily.
DOI: 10.6084/m9.figshare.5472322
title: A case study of life cycle impacts of small-scale fishing techniques in Thailand

description: Fish provides an important source of protein, especially in developing countries, and the amounts of fish consumed are increasing worldwide (mostly from aquaculture). More than half of all marine fish are caught by small-scale fishery operations. However, no life cycle assessment (LCA) of small-scale fisheries and no LCA of marine fishery operations in Asia (Thailand) exists today. We perform LCAs to compare the impacts of three different fishing techniques: crab gill-nets, squid traps, and fish traps. Primary data sourced from four different fishers were used. We distinguished the life cycle inventories for three different seasons (northeast monsoon, southwest monsoon and pre-monsoon), since the time spent on the water and catch varied significantly between the seasons. Our results showed the largest impacts from artisanal fishing operations affect climate change, human toxicity, and fossil and metal depletion. Our results are, in terms of global warming potential, comparable with other artisanal fisheries. Between different fishing operations, impacts vary between a factor of 2 (for land transformation impacts) and up to a factor of more than 20 (fossil fuel depletion and marine eutrophication). This shows that the way in which operations are performed have a very strong influence on results. Seasonality plays a relevant role for the assessment. Our results highlight that it is important to account for seasonal aspects in LCAs. We encourage a continual effort for collecting and modeling inventory processes, as well as making them available, in order to guarantee that LCA studies outside of Europe can be performed more easily.
DOI: 10.6084/m9.figshare.4720954
title: Influences of horizontal and vertical aspects of land cover and their interactions with regional factors on patterns of avian species-richness

description: We examined how both horizontal and vertical aspects of land-cover diversity influence patterns of avian species-richness across North America. Using count data from Breeding Bird Survey routes within the conterminous USA and land-cover data from the National Land Cover Data-set, we analyzed relationships between species-richness estimates, vegetative strata, landscape diversity and elevation and geographic position using both linear-regression models and a classification and regression tree. We found that latitude, the diversity of land-cover classes present, and the proportion of the landscape containing cover-classes representing 3 vegetative strata had the strongest influence on species richness. This illustrates that, while broad-scale biodiversity trends are strongly influenced by dominant regional factors, they are also sensitive to the structure of the intermediate-level landscape. Thus, factors at multiple scales must be considered when modeling spatial patterns of biodiversity such as avian species-richness.
DOI: 10.6084/m9.figshare.4720954.v1
title: Influences of horizontal and vertical aspects of land cover and their interactions with regional factors on patterns of avian species-richness

description: We examined how both horizontal and vertical aspects of land-cover diversity influence patterns of avian species-richness across North America. Using count data from Breeding Bird Survey routes within the conterminous USA and land-cover data from the National Land Cover Data-set, we analyzed relationships between species-richness estimates, vegetative strata, landscape diversity and elevation and geographic position using both linear-regression models and a classification and regression tree. We found that latitude, the diversity of land-cover classes present, and the proportion of the landscape containing cover-classes representing 3 vegetative strata had the strongest influence on species richness. This illustrates that, while broad-scale biodiversity trends are strongly influenced by dominant regional factors, they are also sensitive to the structure of the intermediate-level landscape. Thus, factors at multiple scales must be considered when modeling spatial patterns of biodiversity such as avian species-richness.