cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10977919
title: Baseline of the WEAI for East and West African case studies within EWA-BELT Project

description: The Women’s Empowerment in Agriculture Index (WEAI) is a survey-based tool that measures women’s empowerment and inclusion in agricultural activities.

This database contained the baseline "pre-project activities" collected from October 2022 to January 2023 in 40 households per each Country involved (Ethiopia, Kenya, Tanzania, Burkina, Ghana).  A total of 219 households were involved collecting 381 interviews, in 65 households the primary respondent was a woman, so we had not to interview a male secondary respondent. 

There are 3 types of surveys to calculate the WEAI: the original WEAI, the Accelerated WEAI (A – WEAI) and the PRO WEAI. The original WEAI is the first developed by IFPRI, the A-WEAI is a shorter and faster version, while the PRO WEAI is an extended version aimed to cover more areas of empowerment. We chose A-WEAI because it was faster and simpler to administer, considering that it is the first time for most of the partners to work on this survey and that the participants have already answered to many surveys, hence they might answer with more attention to a short and fast survey.
DOI: 10.5281/zenodo.4636039
title: Air parcel trajectories data generated by MIMICA code and simulation results generated by a trajectory box model

description: The dataset includes trajectories of air parcels extracted from the large-eddy simulations of the deep convective clouds from the Amazon based on the soundings retrieved on April 8, 2020, April 23, 2020, and April 27, 2020, over Manaus, as well as the results of the chemical box model simulations quantifying the transport of some atmospheric trace gases abundant in the Amazon.
DOI: 10.5281/zenodo.7813791
title: Towards Fast Region Adaptive Ultrasound Beamformer For Plane Wave Imaging Using Convolutional Neural Networks

description: This dataset is supplementary to the IEEE EMBC 2021 paper titled "Towards Fast Region Adaptive Ultrasound Beamformer for Plane Wave Imaging Using Convolutional Neural Networks"

The dataset is in .mat format and has two variables as below:

tofc: Time of flight corrected (delay compensated) input data

beamformedData: The delay and sum beamformed (pre-envelope) data

The data is in int16 format and may need to be converted to double/float for improved results.

Dataset Access: You need to download the agreement in the link and submit the form along with the agreement in the link
DOI: 10.5281/zenodo.4636038
title: Air parcel trajectories data generated by MIMICA code and simulation results generated by a trajectory box model

description: The dataset includes trajectories of air parcels extracted from the large-eddy simulations of the deep convective clouds from the Amazon based on the soundings retrieved on April 8, 2020, April 23, 2020, and April 27, 2020, over Manaus, as well as the results of the chemical box model simulations quantifying the transport of some atmospheric trace gases abundant in the Amazon.
DOI: 10.5281/zenodo.7813790
title: Towards Fast Region Adaptive Ultrasound Beamformer For Plane Wave Imaging Using Convolutional Neural Networks

description: This dataset is supplementary to the IEEE EMBC 2021 paper titled "Towards Fast Region Adaptive Ultrasound Beamformer for Plane Wave Imaging Using Convolutional Neural Networks"

The dataset is in .mat format and has two variables as below:

tofc: Time of flight corrected (delay compensated) input data

beamformedData: The delay and sum beamformed (pre-envelope) data

The data is in int16 format and may need to be converted to double/float for improved results.

Dataset Access: You need to download the agreement in the link and submit the form along with the agreement in the link
DOI: 10.5281/zenodo.10973092
title: Lost in datification? The journey of data from the primary source to the final interpretation - Evaluation results

description: Results of the evaluation performed for testing the approach proposed in the talk Lost in datification? The journey of data from the primary source to the final interpretation presented at the conference MeTe digitali. Mediterraneo in rete tra testi e contesti (AIUCD2024).
DOI: 10.5281/zenodo.10977856
title: Observed and forecasted pollutant concentrations in the center of Sao Paulo

description: This dataset corresponds to the observed and forecasted pollutant concentrations analyzed in an article submitted to Earth's Future, which is entitled: Air quality forecasts with observation-based scaling of anthropogenic emissions for urban agglomerations. 

The pollutants analyzed are carbon monoxide (CO), nitrogen dioxide (NO2), ozone (O3), sulfur dioxide (SO2) and particulate matter concentrations (PM2.5 and PM10).

Forecasted concentrations are presented for three regional simulations (F-REF, F-DAY and F-HOUR) and two flobal simulations (WACCM and CAMS) for the next day (day_p1 is d+1) and for the day after the next day (day_p2 is d+2). 

The observed data are interpolated in the center of Sao Paulo, following the methodology presented in https://doi.org/10.1029/2022JD038179
DOI: 10.5281/zenodo.10977949
title: ESP additional datasets

description: ESP additional datasets for https://github.com/AlexanderKroll/ESP
DOI: 10.5281/zenodo.10977950
title: ESP additional datasets

description: ESP additional datasets for https://github.com/AlexanderKroll/ESP
DOI: 10.5281/zenodo.7224760
title: Engineered vasculature induces functional maturation of pluripotent stem cell-derived islet organoids

description: The corresponding preprint can be found on bioRxiv

 

The upload here consists of:



vmo_pancreas_simplified_cjh.rds : The processed Seurat object containing integrated data of SC-ß cells and Endothelial & Fibroblasts cells

SC-Beta_EC_Fib-CellChat.ipynb : The jupyter notebook containing R script to identify cell-cell interactions using CellChat
DOI: 10.5281/zenodo.7224761
title: Engineered vasculature induces functional maturation of pluripotent stem cell-derived islet organoids

description: The corresponding preprint can be found on bioRxiv

 

The upload here consists of:



vmo_pancreas_simplified_cjh.rds : The processed Seurat object containing integrated data of SC-ß cells and Endothelial & Fibroblasts cells

SC-Beta_EC_Fib-CellChat.ipynb : The jupyter notebook containing R script to identify cell-cell interactions using CellChat
DOI: 10.5281/zenodo.10930674
title: TNBC- cisplatin resistance metabolomics study

description: A cisplatin-resistant TNBC cell line was developed and characterized. An untargeted metabolomics study was performed using LC-MS/MS technology. The study was done with biological and technical replicates. QC pools were run in between to check the instrument variation. Primary data analysis and metabolite identification were done using compound discoverer 3.2 and statistical analysis was performed using metaboanalysis 5.0. The target metabolite validation was also done using Parallel Reaction Monitoring (PRM) based analysis.
DOI: 10.5281/zenodo.10930675
title: TNBC- cisplatin resistance metabolomics study

description: A cisplatin-resistant TNBC cell line was developed and characterized. An untargeted metabolomics study was performed using LC-MS/MS technology. The study was done with biological and technical replicates. QC pools were run in between to check the instrument variation. Primary data analysis and metabolite identification were done using compound discoverer 3.2 and statistical analysis was performed using metaboanalysis 5.0. The target metabolite validation was also done using Parallel Reaction Monitoring (PRM) based analysis.
DOI: 10.5281/zenodo.10978207
title: Artificial intelligence-based parametrization of Michaelis–Menten maximal velocity: Toward in silico New Approach Methodologies (NAMs)

description: The development of mechanistic systems biology models necessitates the utilization of numerous kinetic parameters once the enzymatic mode of action has been identified. Moreover, wet lab experimentation is associated with particularly high costs, does not adhere to the principle of reducing the number of animal tests, and is a time-consuming procedure. Alternatively, an artificial intelligence-based method is proposed that utilizes enzyme amino acid structures as input data. This method combines NLP techniques with molecular fingerprints of the catalyzed reaction to determine Michaelis–Menten maximal velocities (Vmax). The molecular fingerprints employed include RCDK standard fingerprints (1024 bits), MACCS keys (166 bits), PubChem fingerprints (881 bits), and E-States fingerprints (79 bits). These were integrated to produce reaction fingerprints. The data were sourced from SABIO RK, providing a concrete framework to support training procedures. After the data preprocessing stage, the dataset was randomly split into a training set (70%), a validation set (10%), and a test set (20%), ensuring unique amino acid sequences for each subset. The data points with structures similar to those used to train the model as well as uncommon reactions were employed to further test the model. The developed models were optimized during the training procedure to predict Vmax values efficiently and reliably. By utilizing a fully connected neural network, these models can be applied to all organisms. The amino acid proportions of enzymes were also tested, which revealed that the amino acid content was an unreliable predictor of the Vmax. During testing, the model demonstrated better performance on known structures than on unseen data. In the given use case, the model trained solely on enzyme representations achieved an R-squared of 0.45 on unseen data and 0.70 on known structures. When enzyme representations were integrated with RCDK fingerprints, the model achieved an R-squared of 0.46 for unseen data and 0.62 for known structures.
DOI: 10.5281/zenodo.10978208
title: Artificial intelligence-based parametrization of Michaelis–Menten maximal velocity: Toward in silico New Approach Methodologies (NAMs)

description: The development of mechanistic systems biology models necessitates the utilization of numerous kinetic parameters once the enzymatic mode of action has been identified. Moreover, wet lab experimentation is associated with particularly high costs, does not adhere to the principle of reducing the number of animal tests, and is a time-consuming procedure. Alternatively, an artificial intelligence-based method is proposed that utilizes enzyme amino acid structures as input data. This method combines NLP techniques with molecular fingerprints of the catalyzed reaction to determine Michaelis–Menten maximal velocities (Vmax). The molecular fingerprints employed include RCDK standard fingerprints (1024 bits), MACCS keys (166 bits), PubChem fingerprints (881 bits), and E-States fingerprints (79 bits). These were integrated to produce reaction fingerprints. The data were sourced from SABIO RK, providing a concrete framework to support training procedures. After the data preprocessing stage, the dataset was randomly split into a training set (70%), a validation set (10%), and a test set (20%), ensuring unique amino acid sequences for each subset. The data points with structures similar to those used to train the model as well as uncommon reactions were employed to further test the model. The developed models were optimized during the training procedure to predict Vmax values efficiently and reliably. By utilizing a fully connected neural network, these models can be applied to all organisms. The amino acid proportions of enzymes were also tested, which revealed that the amino acid content was an unreliable predictor of the Vmax. During testing, the model demonstrated better performance on known structures than on unseen data. In the given use case, the model trained solely on enzyme representations achieved an R-squared of 0.45 on unseen data and 0.70 on known structures. When enzyme representations were integrated with RCDK fingerprints, the model achieved an R-squared of 0.46 for unseen data and 0.62 for known structures.
DOI: 10.5281/zenodo.10978052
title: Diversity of parasitoid wasps (Insecta, Hymenoptera) in oilseed rape fields in Serbia

description: Oilseed rape is an important crop grown worldwide and used for various purposes, including oil extraction and animal feed. In Europe, there are six major pest species and several other minor pests that can significantly affect oilseed rape production, requiring growers to effectively control them in order to ensure crop yield. The host-parasitoid complexes of these pests have been studied in detail and recorded mainly in western, central and northern Europe. As an abundant source of pollen and nectar, oilseed rape may also be attractive to other parasitoids that do not have direct trophic interactions with oilseed rape pest species. The aim of this study is to fill the knowledge gap regarding the wider parasitoid community in oilseed rape fields, particularly in southern Europe.

During the two-year study, a total of 3135 specimens of primary and secondary parasitoids were sampled, of which 2855 were found in oilseed rape fields and 280 in semi-natural habitats. We found 153 taxa, of which 119 were found in oilseed rape fields and 87 in semi-natural habitats. We identified 31 genera (33 species) as parasitoids of oilseed rape pests, 54 genera (97 species) parasitising non-pest species and 10 genera (23 species) as possible parasitoids of oilseed rape pests. This study shows that the parasitoid community in oilseed rape fields is very diverse and that includes parasitoids of both oilseed rape pest and non-pest species.
DOI: 10.5281/zenodo.10978053
title: Diversity of parasitoid wasps (Insecta, Hymenoptera) in oilseed rape fields in Serbia

description: Oilseed rape is an important crop grown worldwide and used for various purposes, including oil extraction and animal feed. In Europe, there are six major pest species and several other minor pests that can significantly affect oilseed rape production, requiring growers to effectively control them in order to ensure crop yield. The host-parasitoid complexes of these pests have been studied in detail and recorded mainly in western, central and northern Europe. As an abundant source of pollen and nectar, oilseed rape may also be attractive to other parasitoids that do not have direct trophic interactions with oilseed rape pest species. The aim of this study is to fill the knowledge gap regarding the wider parasitoid community in oilseed rape fields, particularly in southern Europe.

During the two-year study, a total of 3135 specimens of primary and secondary parasitoids were sampled, of which 2855 were found in oilseed rape fields and 280 in semi-natural habitats. We found 153 taxa, of which 119 were found in oilseed rape fields and 87 in semi-natural habitats. We identified 31 genera (33 species) as parasitoids of oilseed rape pests, 54 genera (97 species) parasitising non-pest species and 10 genera (23 species) as possible parasitoids of oilseed rape pests. This study shows that the parasitoid community in oilseed rape fields is very diverse and that includes parasitoids of both oilseed rape pest and non-pest species.
DOI: 10.5281/zenodo.10978781
title: Dataset for "Reconfigurable spin-wave platform based on interplay between nanodots and waveguide in hybrid magnonic crystal"

description: The dataset consist of the data used to prepare the figures for the manuscript: 

Krzysztof Szulc, Mateusz Zelent, Maciej KrawczykReconfigurable spin-wave platform based on interplay between nanodots and waveguide in hybrid magnonic crystal.

together with animated version of two figures: Figure 4 and Figure S1.

Please read README.txt file to see the description of the data in the files.
description: K.S. and M.K. acknowledge the financial support from National Science Centre, Poland, grants no. UMO-2020/39/I/ST3/02413 and UMO-2021/41/N/ST3/04478. K.S. acknowledges the financial support from the Foundation for Polish Science.
DOI: 10.5281/zenodo.10964849
title: Dataset for "Reconfigurable spin-wave platform based on interplay between nanodots and waveguide in hybrid magnonic crystal"

description: The dataset consist of the data used to prepare the figures for the manuscript: 

Krzysztof Szulc, Mateusz Zelent, Maciej KrawczykReconfigurable spin-wave platform based on interplay between nanodots and waveguide in hybrid magnonic crystal.

together with animated version of two figures: Figure 4 and Figure S1.

Please read README.txt file to see the description of the data in the files.
description: K.S. and M.K. acknowledge the financial support from National Science Centre, Poland, grants no. UMO-2020/39/I/ST3/02413 and UMO-2021/41/N/ST3/04478. K.S. acknowledges the financial support from the Foundation for Polish Science.
DOI: 10.5281/zenodo.10978212
title: The Results of Amery Ice Shelf Supraglacial Lake Dection and Surveying Using ICESat-2 and Sentinel-2

description: This is the first release of the results and verification used for the submitted paper:

Zhang et al., 2024: Automatically Detection and Surveying Supraglacial Lakes Using Machine Learning from ICESat-2 and Sentinel-2 Data
DOI: 10.5281/zenodo.10978211
title: The Results of Amery Ice Shelf Supraglacial Lake Dection and Surveying Using ICESat-2 and Sentinel-2

description: This is the first release of the results and verification used for the submitted paper:

Zhang et al., 2024: Automatically Detection and Surveying Supraglacial Lakes Using Machine Learning from ICESat-2 and Sentinel-2 Data
DOI: 10.5281/zenodo.10979052
title: Tomogram of T. kivui FIB-milled cells with HDCR filaments

description: This entry contains the T. kivui tomogram (MRC format) and associated reconstruction files used in the ICE-TIDE manuscript and tutorial.

For the raw data and more details, please see the EMPIAR-11058 deposition.

These data were originally published in:Dietrich, H.M., Righetto, R.D., Kumar, A. et al. Membrane-anchored HDCR nanowires drive hydrogen-powered CO2 fixation. Nature 607, 823–830 (2022). https://doi.org/10.1038/s41586-022-04971-z
DOI: 10.5281/zenodo.10979053
title: Tomogram of T. kivui FIB-milled cells with HDCR filaments

description: This entry contains the T. kivui tomogram (MRC format) and associated reconstruction files used in the ICE-TIDE manuscript and tutorial.

For the raw data and more details, please see the EMPIAR-11058 deposition.

These data were originally published in:Dietrich, H.M., Righetto, R.D., Kumar, A. et al. Membrane-anchored HDCR nanowires drive hydrogen-powered CO2 fixation. Nature 607, 823–830 (2022). https://doi.org/10.1038/s41586-022-04971-z
DOI: 10.15468/dl.rxcp88
title: Occurrence Download

description: A dataset listing the 3863828 species recorded in GBIF matching the query:
{ }

 The dataset's 3863828 records were derived from 57428 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137877-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/chs-m11615
title: Zuni Indian making wampum, ca.1898

description: Photograph of a Zuni Indian making wampum, ca.1898. He is seen using some type of primitive drilling device to drill a hole into an object he placed on the stool. The stool is held together with metallic wires. The man is sitting on a short square crate. He is wearing a buttoned up collar shirt and has turban-like headband wrapped around his head. He stares off to his left while using his right leg to hold the stool and his arms to do the drilling. Behind him is an adobe house with several large slabs of stone(?) leaned against it.
DOI: 10.25549/chs-m15605
title: Zuni Indian man worshipping in front of the Old Zuni stone idols, ca.1900

description: Photograph of a Zuni Indian man worshiping in front of the Old Zuni stone idols, ca.1900. A lone Zuni Indian stands in front of five stone idols in the middle of a desert-like area. Shrubs, bushes and flat rocks are scattered throughout the landscape. Flat mountains are visible in the distance. The man is standing straight, holding his hat to his side, has his right arm extended. His right hand appears to be pinching something (soil?). Behind him are remnants of an adobe structure.
DOI: 10.25549/chs-m3840
title: Two Zuni Indian men making wampum, ca.1900

description: Photograph of two Zuni Indian men making wampum, ca.1900. Both men are wearing buttoned up collar shirts and have turban-like headbands wrapped around their heads. The man on the left is measuring a piece of wood, while the man on the right is using a primitive drilling tool to drill into a small object situated on top of a wooden crate. The man on the right is wearing three necklaces of wampum. The man on the left is laying down silver(?) and preparing it for his associate to drill. Around them lie slabs of stones(?).
DOI: 10.25549/chs-m1436
title: Exterior view of the Fischer Vaudeville Theater (now City Hall), between Main Street and Spring Street, ca.1905

description: Photograph of the exterior view of the Fischer Vaudeville Theater (now City Hall), north side of 1st Street, between Main Street and Spring Street, ca.1905. The theatre is about two-stories tall. Just above the first floor is the name "Fischer's Theatre" in lights. Above the roof is the name "Vaudeville, 10 & 20" in lights. The second floor has four windows with a decorative multifoils arch above them. The first floor has two doorways flanking the center booth. A set of stairs leading to the second floor can be found to the right of the building. A lamppost on the sidewalk prominently displays the theater's name and current showing.; Legible signs include: "Vaudeville, 10 & 20", "Fischer's Theatre", "[...]na, [...]ery, [...]rant", "[...]icolas", "$10, 3 for $25", "[spe]cialty", "A [...] moral family"..., "produced by our all star Stock Co.", "Woods & Woods", "Alat Carr", "new moving pictures", "next [week] [...]", "[...]ins, pippens", "Opti[...], Havana, for 25¢, 10¢ st[...]", "clam chowder, baked fish, broiled beef horsera[dish]", "lamb curry & rice", "codfish & cream", "lamb curry & rice", "maccaroni & cheese", "roast beef & mutton", "First Street bet. Main and Spring, E.A. Fischer, proprietor, Harry James, director, commencing Monday, Sep. 11, 'A Warm Reception', everything new!, new songs!, a screaming farce in one act, 3, new Vaudeville act, matinees, Tuesday, Thursday, Saturday, Sunday, prices 10¢, 20¢, reserved seats 25¢, better than the best!".
DOI: 10.25549/chs-m949
title: Exterior view of Saint Mary's church in Boyle Heights, Los Angeles, between 1880-1915

description: Photograph (streetscape, horizontal photography) of the exterior view of Saint Mary's church in Boyle Heights, Los Angeles, between 1880-1915. The church, designed by R.B. Young, stands about three-stories tall and is situated on the corner of the street. A set of stairs leads to the bell tower. There is a cross on the peaks of each gable and on top of the spire of the bell tower. At left, a cross stands on each of the two windowless dormers. Above these dormers is a pair of vented dormers. The two windowless dormers flank a stained glass window with the figure portraying Jesus(?). Utility poles, palms, and trees line the sidewalks along the dirt roads.