cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r9k57.2/2.2
title: wQMC_testPack

description: A test package for wQMC for generating the data that is given in the paper
DOI: 10.5061/dryad.v3n85/2
title: Cat home range data (m2)

description: Free-ranging cat home range data calculated by 95%, 90% and 50% kernel density estimations
DOI: 10.5061/dryad.v3n85/3
title: Cat Home Range (ha) by sex and repro status.xls

description: Free-ranging cat home range data (ha) by sex and reproductive status
DOI: 10.5061/dryad.v3n85/4
title: Cat scat processing data

description: Free-ranging cat scat data with processed components, including bones, teeth, and hair
DOI: 10.5061/dryad.v6t5m/1
title: Late nesting presence or absence data file

description: Field data collected in western Nebraska from 1982 through 2014, showing for each colony whether late nesting by cliff swallows occurred and whether the colony site was fumigated that year.
DOI: 10.5061/dryad.26h7b/1
title: Bliss_bryo_arcticborealbryo.tag

description: The unique P6 loop trnL sequences produced by amplification of DNA with the primers bryo_P6F_1* & bryo_P6R as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. Taxonomic identification of sequences was inferred using a compilation of quality-checked and curated reference libraries for arctic and boreal species constructed at the Natural History Museum in Oslo (arctic vascular plants: Sønstebø et al. 2010; boreal vascular plants: Willerslev et al. 2014; bryophytes: Soininen et al. 2015). Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.26h7b/2
title: Bliss_bryo_embl113.tag

description: The unique P6 loop trnL sequences produced by amplification of DNA with the primers bryo_P6F_1* & bryo_P6R as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targetedregion using ecoPCR (Ficetola et al. 2010).  Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.26h7b/3
title: Bliss_vp1_arcticborealbryo.tag

description: The unique P6 loop trnL sequences produced by amplification of DNA with the primers trnL_g and trnL_h as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. These sequences were recovered in the first round of amplification and sequencing of vascular plant DNA, as detailed in the associated publication (vascular plant dataset 1, "vp1"). Taxonomic identification of sequences was inferred using a compilation of quality-checked and curated reference libraries for arctic and boreal species constructed at the Natural History Museum in Oslo (arctic vascular plants: Sønstebø et al. 2010; boreal vascular plants: Willerslev et al. 2014; bryophytes: Soininen et al. 2015). Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.26h7b/4
title: Bliss_vp1_embl113.tag

description: The unique P6 loop trnL sequences produced by amplification of DNA with the primers trnL_g and trnL_h preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. These sequences were recovered in the first round of amplification and sequencing of vascular plant DNA, as detailed in the associated publication (vascular plant dataset 1, "vp1"). Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targeted region using ecoPCR (Ficetola et al. 2010).  Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.26h7b/5
title: Bliss_vp2_arcticborealbryo.tag

description: The unique P6 loop trnL sequences produced by amplification of DNA with the primers trnL_g and trnL_h as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. These sequences were recovered in the second round of amplification and sequencing of vascular plant DNA, as detailed in the associated publication (vascular plant dataset 2, "vp2"). Taxonomic identification of sequences was inferred using a compilation of quality-checked and curated reference libraries for arctic and boreal species constructed at the Natural History Museum in Oslo (arctic vascular plants: Sønstebø et al. 2010; boreal vascular plants: Willerslev et al. 2014; bryophytes: Soininen et al. 2015). Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.26h7b/6
title: Bliss_vp2_embl113.tag

description: The unique P6 loop trnL sequences produced by amplification of DNA with the primers trnL_g and trnL_h preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. These sequences were recovered in the second round of amplification and sequencing of vascular plant DNA, as detailed in the associated publication (vascular plant dataset 2, "vp2"). Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targeted region using ecoPCR (Ficetola et al. 2010).  Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.306g8/1
title: XRD raw data

description: XRD 2theta (degrees) vs. arbitrary intensity data for the ZnSiHA samples that were mixture of HA+aTCP (Table 1), and higher resolution scans of phase pure HA and substituted HA that were used in Rietveld refinement of the lattice parameters.
DOI: 10.5061/dryad.306g8/2
title: FTIR raw data

description: Raw data from FTIR scans (wavenumber cm^-1 vs arbitrary intensity) of ZnSiHA.
DOI: 10.5061/dryad.306g8/3
title: XRF raw data

description: XRF report from AMG Superalloys Ltd. of elemental oxide weight percentages. Oxides tested for included CaO, ZnO, SiO2, P2O5, Na2O, MgO, Al2O3, K2O, TiO2, Mn3O4, V2O5, Cr2O3, Fe2O3, BaO, ZrO2 and SrO.
DOI: 10.5061/dryad.306g8/4
title: Modelling files

description: Cif files and CASTEP files for ZnSiHA with Zn at an interstitial position and on a Ca site, and ZnHA with Zn at an interstitial position.
DOI: 10.5061/dryad.4q67s/1
title: Data and scripts for niche models and other analyses

description: Zip file with several folders. Please see README file.
DOI: 10.5061/dryad.566h9/10
title: Shattering S 2013

description: Shattering S 2013
DOI: 10.5061/dryad.566h9/11
title: Shattering B 2012

description: Shattering B 2012
DOI: 10.5061/dryad.566h9/12
title: Shattering B 2012

description: Shattering B 2012
DOI: 10.5061/dryad.566h9/13
title: Hull color S

description: Hull color S
DOI: 10.5061/dryad.566h9/5
title: heading date B 2012

description: heading date B 2012
DOI: 10.5061/dryad.566h9/6
title: heading date B 2013

description: heading date B 2013
DOI: 10.5061/dryad.566h9/7
title: panicle length S 2012

description: panicle length S 2012
DOI: 10.5061/dryad.566h9/8
title: panicle length S 2013

description: panicle length S 2013
DOI: 10.5061/dryad.566h9/9
title: Shattering S 2012

description: Shattering S 2012
DOI: 10.5061/dryad.5rm6d/8
title: Trebouxia clade 'S' ITS alignment

description: Alignment of all Trebouxia ITS sequences belonging to the T. simplex/’letharii’/jamesii clade
DOI: 10.5061/dryad.6171j/12
title: Unfiltered sequencing data (fasta format)

description: This fasta file contains unfiltered sequencing data (i.e. merged reads assigned to their original sample). Amplicons were amplified using the universal primers “g” (5’-GGGCAATCCTGAGCCAA-3’) and “h” (5’-CCATTGAGTCTCTGCACCTATC-3’) (Taberlet et al. 2007). Sequences were obtained by a 2 x 100 bp paired-end sequencing on Illumina HiSeq 2500 platform. First processing steps were performed using the OBITOOLS software (http://metabarcoding.org/obitools) as follows: (i) Direct and reverse reads corresponding to the same sequence were aligned and merged thanks to the IlluminaPairEnd program. Only merged sequences with a high alignment quality score were retained (&gt;=40) (ii) Each merged sequence was assigned to its original sample using the tags information previously added to primers thanks to the ngsfilter program. For this step, only sequences containing both primers (with a maximum of 3 mismatches per primer) and exact tag sequences were selected. (iii) To reduce the file size, strictly identical sequences were merged together while keeping information about the origin of sequences.
DOI: 10.5061/dryad.6171j/13
title: Unfiltered sequencing data (table format)

description: This table contains pre-filtered sequencing data (i.e. usable merged reads assigned to their original sample). Amplicons were amplified using the universal primers “g” (5’-GGGCAATCCTGAGCCAA-3’) and “h” (5’-CCATTGAGTCTCTGCACCTATC-3’) (Taberlet et al. 2007). Sequences were obtained by a 2 x 100 bp paired-end sequencing on Illumina HiSeq 2500 platform. First processing steps were performed using the OBITOOLS software (http://metabarcoding.org/obitools) as follows: (i) Direct and reverse reads corresponding to the same sequence were aligned and merged thanks to the IlluminaPairEnd program. Only merged sequences with a high alignment quality score were retained (&gt;=40). (ii) Each merged sequence was assigned to its original sample using the tags information previously added to primers thanks to the ngsfilter program. For this step, only sequences containing both primers (with a maximum of 3 mismatches per primer) and exact tag sequences were selected. (iii) To reduce the file size, strictly identical sequences were merged together while keeping information about the origin of sequences. (iv) Sequences containing ambiguous nucleotides or shorter than 7 bp were discarded. (v) Pure singleton (sequences with 1 read among the whole dataset) were removed.
DOI: 10.5061/dryad.6171j/14
title: Filtered sequencing data

description: This table contains filtered sequences. Amplicons were amplified using the universal primers “g” (5’-GGGCAATCCTGAGCCAA-3’) and “h” (5’-CCATTGAGTCTCTGCACCTATC-3’) (Taberlet et al. 2007). Sequences were obtained by a 2 x 100 bp paired-end sequencing on Illumina HiSeq 2500 platform. Data were filtered according to the filterering procedure described in Pansu et al. (2014) :'Reconstructing long-term human impacts on plant communities : an ecological approach based on  lake sediment DNA'.
DOI: 10.5061/dryad.6171j/15
title: Alpine reference database EMBL (gh)

description: This file contains dereplicated sequences of alpine taxa extracted from the EMBL nucleic database release 117 using the ecopcr program (http://metabarcoding.org/obitools). Sequences have been extracted using the primers “g” (5’-GGGCAATCCTGAGCCAA-3’) and “h” (5’-CCATTGAGTCTCTGCACCTATC-3’) (Taberlet et al. 2007). Then, only alpine taxa were selected.
DOI: 10.5061/dryad.6171j/5
title: Sample_Age

description: This file contains the age of each sample based on 14C measurements.
DOI: 10.5061/dryad.728b4.1
title: Data from: The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing
DOI: 10.5061/dryad.cs4h8/3
title: Fig. S3 Neighbor-joining phylogenetic tree based on the nucleotide sequence of ITS1-5.8S-ITS2 showing the evolutionary relationships of the novel yeast isolates

description: The aligned sequences in FASTA file format (.fas)
DOI: 10.5061/dryad.cs4h8/4
title: Fig. S3 Neighbor-joining phylogenetic tree based on the nucleotide sequence of ITS1-5.8S-ITS2 showing the evolutionary relationships of the novel yeast isolates -tree file

description: phylogenetic tree file in NEWICK format (.nwk)
DOI: 10.5061/dryad.cs4h8/5
title: Table S3 Molecular grouping and identification of culturable bacteria isolated from the stage-wise collected samples of the indigenous fermentation of S. munroi meristem for production of soidon by ARDRA and rRNA sequencing

description: The aligned sequences in FASTA file format (.fas)
DOI: 10.5061/dryad.cs4h8/6
title: Table S3 Molecular grouping and identification of culturable yeasts from the stage-wise collected samples of the indigenous fermentation of S. munroi meristem for production of soidon by ARDRA and 26S rRNA D1/D2 region sequencing

description: The aligned sequences in FASTA file format (.fas)
DOI: 10.5061/dryad.cs4h8/7
title: Table S3 Molecular grouping and identification ofculturable yeasts isolated from the stage-wise collected samples of the indigenous fermentation of S. munroi meristem for production of soidon by ARDRA and ITS sequencing

description: The aligned sequences in FASTA file format (.fas)
DOI: 10.5061/dryad.dr491/1
title: data_Chen_et_al_Funct_Ecol

description: Biomass components of pea plants collected from a greenhouse experiment
DOI: 10.5061/dryad.j5h92/1
title: Cactus Wren Clusters and Geographic Coordinates-GENALEX

description: This is a GENALEX format file with the data split into groups as detected in clustering analyses.  Geographic coordinates are indicated on the second sheet.
DOI: 10.5061/dryad.j5h92/2
title: Cactus Wren Populations and Geographic Coordinates-GENALEX

description: This is genetic data from cactus wrens divided into populations as determined following Waples & Gaggiotti (2006) and is in GENALEX format.  Geographic data can be obtained in the associated "clusters" data file.
DOI: 10.5061/dryad.j5h92/3
title: cacws_genalex_clusters

description: This file contains microsatellite data and geographic coordinates for all of the individuals analyzed in the study.  The format is GENALEX and samples are arranged according to clustering results.
DOI: 10.5061/dryad.j5h92/4
title: IBD_FinalDatasets_Dryad

description: Data used for IBD and landscape analyses.
DOI: 10.5061/dryad.j5h92/5
title: Dispersal_Habitat_Model

description: Georeferenced dispersal habitat model output  in .img format with associated metadata
DOI: 10.5061/dryad.nb5pq/1
title: Data on ace1 genotypes

description: variations of on ace1 genotypes as affected by temperatures.
DOI: 10.5061/dryad.nb5pq/2
title: Data on ki

description: the variations of ki values corresponding to different generations and strains
DOI: 10.5061/dryad.nb5pq/3
title: Data on longevity and fortility

description: longevity and fortility in R and S insect strains under different temperature
DOI: 10.5061/dryad.nb5pq/4
title: Data on mortality

description: mortality in R and S insect strains under different temperatures
DOI: 10.5061/dryad.r9k57.2/3.2
title: wQMC packages overview

description: Guidelines for running wQMC and the simulation tests.
DOI: 10.5061/dryad.0qk7f/1
title: All variants of five known STGD genes in 33 patients by WES
DOI: 10.5061/dryad.16pj5/1
title: barcode keyfile

description: This file associates sequencing barcodes with samples.
DOI: 10.5061/dryad.16pj5/2
title: Solidago_TASSEL_options

description: This file details variable options used during the TASSEL alignment and SNP calling pipeline.
DOI: 10.5061/dryad.16pj5/3
title: Junceae_30percent_hapmap.hmp

description: Hapmap file for Solidago subsection Junceae filtered for SNPs present in at least 30% of samples.
DOI: 10.5061/dryad.16pj5/4
title: Junceae_70percent_hapmap.hmp

description: Hapmap file for Solidago subsection Junceae filtered for SNPs present in at least 70% of samples.
DOI: 10.5061/dryad.16pj5/5
title: Squarrosae_30percent_hapmap.hmp

description: Hapmap file for Solidago subsection Squarrosae filtered for SNPs present in at least 30% of samples.
DOI: 10.5061/dryad.16pj5/6
title: Squarrosae_70percent_hapmap.hmp

description: Hapmap file for Solidago subsection Squarrosae filtered for SNPs present in at least 70% of samples.
DOI: 10.5061/dryad.16pj5/7
title: Triplinerviae_30percent_hapmap.hmp

description: Hapmap file for Solidago subsection Triplinerviae filtered for SNPs present in at least 30% of samples.
DOI: 10.5061/dryad.16pj5/8
title: Triplinerviae_70percent_hapmap.hmp

description: Hapmap file for Solidago subsection Triplinerviae filtered for SNPs present in at least 70% of samples.
DOI: 10.5061/dryad.16pj5/9
title: FastqToTagCountPlugin

description: FastqToTagCountPlugin XML file
DOI: 10.5061/dryad.26h7b/7
title: Bliss_diat_embl113.tag

description: The unique rbcL sequences produced by amplification of DNA with the primers rbcL_705f & rbcl_808r as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targeted region using ecoPCR (Ficetola et al. 2010).  Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.26h7b/8
title: Bliss_cop_embl113.tag

description: The unique sequences produced by amplification of DNA with the primers CopF2 & CopR1 as detailed in the associated publication. The data was recovered from DNA preserved in a sediment core spanning the Holocene from Bliss Lake, Peary Land, North Greenland. Taxonomic identification of sequences was inferred using a reference library formatted from the EMBL Nucleotide Database standard release 113 by extracting sequences of the targetedregion using ecoPCR (Ficetola et al. 2010).  Further details can be found in the ReadMe file.
DOI: 10.5061/dryad.4736q/1
title: Bacterial Isolate data

description: This file includes information for each bacterial isolate assayed in the study. Isolate ID, 16s rRNA sequence, the source and site the isolate was collected from, mean Bd inhibition, and taxonomic identification are listed for each isolate.
DOI: 10.5061/dryad.4736q/2
title: Isolate Sequence Alignment

description: Alignment of 16s rRNA sequences.
DOI: 10.5061/dryad.4736q/3
title: Co-culture experiment inhibition data

description: Co-culture experiment inhibition data.
DOI: 10.5061/dryad.4736q/4
title: Co-culture experiment metabolite data

description: Number of metabolites detected for each bacterial isolate.
DOI: 10.5061/dryad.4736q/5
title: Acinetobacter Isolate Sequence Alignment
DOI: 10.5061/dryad.4736q/6
title: Pseudomonas Isolate Sequence Alignment
DOI: 10.5061/dryad.566h9/14
title: Hull color B

description: Hull color B
DOI: 10.5061/dryad.566h9/15
title: awn length B 2012

description: awn length B 2012
DOI: 10.5061/dryad.566h9/16
title: awn length B 2013

description: awn length B 2013
DOI: 10.5061/dryad.566h9/17
title: Pericarp S

description: Pericarp S
DOI: 10.5061/dryad.566h9/18
title: Pericarp B

description: Pericarp B
DOI: 10.5061/dryad.566h9/19
title: hetfilt_ricegbs2_Yf_sd

description: S mapping population SNP raw data
DOI: 10.5061/dryad.566h9/20
title: hetfilt_ricegbs2_Wf_sd

description: B mapping population raw SNP data
DOI: 10.5061/dryad.566h9/21
title: An1
DOI: 10.5061/dryad.5k927/1
title: PROBIT_RAW_DATA_PREY_T.URTICAE

description: Raw data corresponding to the probit curves multiplex PCR detection of the tetranychid prey Tetranychus urticae in three different predators: Euseius stipulatus, Phytoseiulus persimilis and Neouseiulus californicus
DOI: 10.5061/dryad.5k927/2
title: PROBIT_RAW_DATA_PREY_P.CITRI

description: Raw data corresponding to the probit curves multiplex PCR detection of the tetranychid prey Panonychus citri in three different predators: Euseius stipulatus, Phytoseiulus persimilis and Neouseiulus californicus
DOI: 10.5061/dryad.5k927/3
title: RAW_DATA_FIELD_SAMPLING

description: Raw data corresponding to the multiplex PCR identification of the target phytoseiid predators and their tetranychid preys in field samples
DOI: 10.5061/dryad.5k927/4
title: FIG_1_PROBIT_DATA

description: Data corresponding to the probit curves of Figure 1
DOI: 10.5061/dryad.5k927/5
title: FIG_2_RELATIVE_QUANTIFICATION_OF_PREY_DNA_BY_QPCR

description: Data corresponding to the relative quantification of prey (Tetranychus urticae) and predator (Phytoseiulus persimilis) DNA by qPCR from Figure 2.
DOI: 10.5061/dryad.5k927/6
title: FIG_3_MOLECULAR_DETECTION_OF_TETRANYCHID_PREY_IN_FIELD_PREDATORS

description: Summary of the molecular detection data of tetranychid prey on phytoseiid predators in field samples for the Figure 3.
DOI: 10.5061/dryad.5rm6d/9
title: Concatenated ITS, COXII, rbcL, and psbJ matrix for representatives of the T. arboricola/gigantea group

description: Concatenated ITS, COXII, rbcL, and psbJ matrix for representatives of the T. arboricola/gigantea group
DOI: 10.5061/dryad.6171j/16
title: Global reference database EMBL (gh)

description: This file contains all dereplicated sequences of alpine taxa extracted from the EMBL nucleic database release 117 using the ecopcr program (http://metabarcoding.org/obitools). Sequences have been extracted using the primers “g” (5’-GGGCAATCCTGAGCCAA-3’) and “h” (5’-CCATTGAGTCTCTGCACCTATC-3’) (Taberlet et al. 2007).
DOI: 10.5061/dryad.6vb73/1
title: Table A1. Sex and maturation status of adult workers.

description: Sex and maturation status of adult workers from five S. elizabethae colonies from the demosponge Lissodendoryx colombiensis collected from Bocas del Toro, Panama.
DOI: 10.5061/dryad.6vb73/2
title: Table A2. Gonadal development of  workers

description: Gonadal development of the worker that had the most advanced development in each group under three experimental treatments. 1Q/6W: one queen and six workers; 0Q/6W: queenless with six workers (0Q/6W); and 0Q/1W: one worker only. Numbers in the table represent counts of groups. We have excluded 10, 10 and 4 groups from treatments 0Q/1W, 1Q/6W and 0Q/6W respectively, because either workers had initial gonadal development, the queen died, the group had only male workers, or the group had only female workers.
DOI: 10.5061/dryad.75n5q/1
title: HC.auto.2pops

description: This file is a text file in Arelquin input format. It could easily be manipulated into other formats. The 2 groups represent autosome data for 2 species C. urophasianus and C. minimus.
DOI: 10.5061/dryad.75n5q/2
title: HC.auto.3pops

description: This file is a text file in Arelquin input format.  It contains autosome SNP genotypes for three groups. Two groups of C. urophasianus (one is GRSG which represents the southern part of the range and the other is BiState which represents the diverged population on the border between California and Nevada).  The third group is the Gunnison Sage-grouse data.
DOI: 10.5061/dryad.7nb71/1
title: DataJacobsonetal2015

description: This file contains the mass and growth metrics as well as length and size variables and pre- and post-trial partial warps for all individuals, with the treatment, week and channel in which they participated indicated. Also present is the information garnered from feeding videos, spatial resource patch use and number of observed chases.
DOI: 10.5061/dryad.g23f6/1
title: pec_et_al_understory_diversity_environment
DOI: 10.5061/dryad.g3gj1/1
title: Data from: Umbilical vein oxytocin for the treatment of retained placenta (Release Study).

description: This is a fully labelled SPSS dataset from the clinical trial of umbilical oxytocin for the treatment of human retained placentas. Ethical approval for its publication was obtained from the Central NRES Committee (London) on 24th March 2015. All except 2 indirect identifiers have been removed so as to fully anonymise it in line with recommendations from Hrynaszkiewicz et al (BMJ 2010;340:c181).
DOI: 10.5061/dryad.g6311/1
title: WGS_S1toS3.xlsx

description: Analyses-ready data for Fig. 3 (a pre-processed file that contains 18 accessions and nucleotide sequence within S1, S2, & S3 region).