cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13186973
title: Supplementary Material for: Four Actionable Bottlenecks and Potential Solutions to Translating Psychiatric Genetics Research: An Expert Review

description: <b><i>Background:</i></b> Psychiatric genetics has had limited success in translational efforts. A thorough understanding of the present state of translation in this field will be useful in the facilitation and assessment of future translational progress. <b><i>Purpose:</i></b> A narrative literature review was conducted. Combinations of 3 groups of terms were searched in EBSCOhost, Google Scholar, and PubMed. The review occurred in multiple steps, including abstract collection, inclusion/exclusion criteria review, coding, and analysis of included papers. <b><i>Results:</i></b> One hundred and fourteen articles were analyzed for the narrative review. Across those, 4 bottlenecks were noted that, if addressed, may provide insights and help improve and increase translation in the field of psychiatric genetics. These 4 bottlenecks are emphasizing linear translational frameworks, relying on molecular genomic findings, prioritizing certain psychiatric disorders, and publishing more reviews than experiments. <b><i>Conclusions:</i></b> These entwined bottlenecks are examined with one another. Awareness of these bottlenecks can inform stakeholders who work to translate and/or utilize psychiatric genetic information. Potential solutions include utilizing nonlinear translational frameworks as well as a wider array of psychiatric genetic information (e.g., family history and gene-environment interplay) in this area of research, expanding which psychiatric disorders are considered for translation, and when possible, conducting original research. Researchers are urged to consider how their research is translational in the context of the frameworks, genetic information, and psychiatric disorders discussed in this review. At a broader level, these efforts should be supported with translational efforts in funding and policy shifts.
DOI: 10.6084/m9.figshare.13186973.v1
title: Supplementary Material for: Four Actionable Bottlenecks and Potential Solutions to Translating Psychiatric Genetics Research: An Expert Review

description: <b><i>Background:</i></b> Psychiatric genetics has had limited success in translational efforts. A thorough understanding of the present state of translation in this field will be useful in the facilitation and assessment of future translational progress. <b><i>Purpose:</i></b> A narrative literature review was conducted. Combinations of 3 groups of terms were searched in EBSCOhost, Google Scholar, and PubMed. The review occurred in multiple steps, including abstract collection, inclusion/exclusion criteria review, coding, and analysis of included papers. <b><i>Results:</i></b> One hundred and fourteen articles were analyzed for the narrative review. Across those, 4 bottlenecks were noted that, if addressed, may provide insights and help improve and increase translation in the field of psychiatric genetics. These 4 bottlenecks are emphasizing linear translational frameworks, relying on molecular genomic findings, prioritizing certain psychiatric disorders, and publishing more reviews than experiments. <b><i>Conclusions:</i></b> These entwined bottlenecks are examined with one another. Awareness of these bottlenecks can inform stakeholders who work to translate and/or utilize psychiatric genetic information. Potential solutions include utilizing nonlinear translational frameworks as well as a wider array of psychiatric genetic information (e.g., family history and gene-environment interplay) in this area of research, expanding which psychiatric disorders are considered for translation, and when possible, conducting original research. Researchers are urged to consider how their research is translational in the context of the frameworks, genetic information, and psychiatric disorders discussed in this review. At a broader level, these efforts should be supported with translational efforts in funding and policy shifts.
DOI: 10.5281/zenodo.4244136
title: EmERGE - Antwerp data

description: EmERGE - Antwerp data WP3
DOI: 10.5281/zenodo.4244135
title: EmERGE - Antwerp data

description: EmERGE - Antwerp data WP3
DOI: 10.5522/04/13176959
title: Behavioral data from the publication, Cortical State Fluctuations during Sensory Decision Making, by Jacobs et al in Current Biology

description: This site contains the behavioural data from the publication, Cortical State Fluctuations during Sensory Decision Making, by Jacobs et al in Current Biology.<br>The data deposited here is from the behavioural tasks described in the publication. (The widefield and pupil data are deposited separately.) The data is organised by experimental subject; most subjects were recorded from on multiple days, which form subfolders within the subkect folder. Within a day, there may have been several experiments, which are again contained in the subfolders with the day folder. The companion code (https://github.com/eakjacobs/Jacobs_et_al_CurrentBiology) is structured according to this data organisation. The companion code also contains the information about which datasets were used in which analyses.<br><br>The datasets can be in different formats; the companion code can handle all of them and transforms them into a standard format as part of the preprocessing. If there are any problems with this, please raise an issue on GitHub.<br><br>Please also follow this link for more information: https://doi.org/10.6084/m9.figshare.13084805<br>Link to research paper (freely available): https://www.cell.com/current-biology/fulltext/S0960-9822(20)31437-8
DOI: 10.5522/04/13176959.v1
title: Behavioral data from the publication, Cortical State Fluctuations during Sensory Decision Making, by Jacobs et al in Current Biology

description: This site contains the behavioural data from the publication, Cortical State Fluctuations during Sensory Decision Making, by Jacobs et al in Current Biology.<br>The data deposited here is from the behavioural tasks described in the publication. (The widefield and pupil data are deposited separately.) The data is organised by experimental subject; most subjects were recorded from on multiple days, which form subfolders within the subkect folder. Within a day, there may have been several experiments, which are again contained in the subfolders with the day folder. The companion code (https://github.com/eakjacobs/Jacobs_et_al_CurrentBiology) is structured according to this data organisation. The companion code also contains the information about which datasets were used in which analyses.<br><br>The datasets can be in different formats; the companion code can handle all of them and transforms them into a standard format as part of the preprocessing. If there are any problems with this, please raise an issue on GitHub.<br><br>Please also follow this link for more information: https://doi.org/10.6084/m9.figshare.13084805<br>Link to research paper (freely available): https://www.cell.com/current-biology/fulltext/S0960-9822(20)31437-8
DOI: 10.5281/zenodo.4244178
title: EmERGE - Zagreb data

description: EmERGE - Zagreb WP3 data
DOI: 10.5281/zenodo.4244177
title: EmERGE - Zagreb data

description: EmERGE - Zagreb WP3 data
DOI: 10.21421/d2/wu4jfa/lsw76x
title: Pearl millet single-row SNP.zip

description: :unav
DOI: 10.21421/d2/wu4jfa/hyfnmg
title: Pearl millet two-row SNP.zip

description: :unav
DOI: 10.6084/m9.figshare.13187006
title: rations-appendix2.xlsx

description: Appendix 2 for the paper 'Rations: Flour, sugar, tea and tobacco in Australian languages'<br>
DOI: 10.21227/mhbk-j550
title: Model5.3

description: LSTM AE
DOI: 10.6084/m9.figshare.13187024
title: 110420_FBSSLNAVI_raw data.xlsx

description: From a group of patients diagnosed with FBSS, we selected patients who underwent percutaneous adhesiolysis in the pain center of Seoul St.Mary's Hospital using a navigation catheter from January 1, 2013 to June 30, 2020.
DOI: 10.6084/m9.figshare.13187024.v1
title: 110420_FBSSLNAVI_raw data.xlsx

description: From a group of patients diagnosed with FBSS, we selected patients who underwent percutaneous adhesiolysis in the pain center of Seoul St.Mary's Hospital using a navigation catheter from January 1, 2013 to June 30, 2020.
DOI: 10.5281/zenodo.4244183
title: EmERGE - Brighton data

description: EmERGE - WP3 Brighton data
DOI: 10.5281/zenodo.4244182
title: EmERGE - Brighton data

description: EmERGE - WP3 Brighton data
DOI: 10.6084/m9.figshare.13187027
title: Test System Data Used for EGIES Risk Evaluation Considering Compressor Station Multiple Failure Modes

description: Test System Data Used for EGIES Risk Evaluation Considering Compressor Station Multiple Failure Modes
DOI: 10.5517/ccdc.csd.ccq6096
title: CCDC 661177: Experimental Crystal Structure Determination

description: Related Article: G.Brewer|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.ccy6xdf
title: CCDC 870585: Experimental Crystal Structure Determination

description: Related Article: Greg Brewer|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc1zdc2t
title: CCDC 1829126: Experimental Crystal Structure Determination

description: Related Article: Daniel Onunga, Jaganyi Deogratius|2020|CSD Communication|||
description: Related Article: Daniel O. Onunga, Rajesh Bellam, Gershom K. Mutua, Meshack Sitati, Manickam D. BalaKumaran, Deogratius Jaganyi, Allen Mambanda|2020|J.Inorg.Biochem.|213|111261|doi:10.1016/j.jinorgbio.2020.111261
DOI: 10.5517/ccdc.csd.cc2551cs
title: CCDC 2000844: Experimental Crystal Structure Determination

description: Related Article: Pablo Domingo-Legarda, Antonio Casado-Sánchez, Leyre Marzo, José Alemán, Silvia Cabrera|2020|Inorg.Chem.|59|13845|doi:10.1021/acs.inorgchem.0c01326
DOI: 10.5517/ccdc.csd.cc2576tg
title: CCDC 2002935: Experimental Crystal Structure Determination

description: Related Article: Deqiang Wang, Shichun Wang, Guohua Hou, Guofu Zi, Marc D. Walter|2020|Inorg.Chem.|59|14549|doi:10.1021/acs.inorgchem.0c02363
DOI: 10.5517/ccdc.csd.cc2576xk
title: CCDC 2002938: Experimental Crystal Structure Determination

description: Related Article: Deqiang Wang, Shichun Wang, Guohua Hou, Guofu Zi, Marc D. Walter|2020|Inorg.Chem.|59|14549|doi:10.1021/acs.inorgchem.0c02363
DOI: 10.5517/ccdc.csd.cc2576zm
title: CCDC 2002940: Experimental Crystal Structure Determination

description: Related Article: Deqiang Wang, Shichun Wang, Guohua Hou, Guofu Zi, Marc D. Walter|2020|Inorg.Chem.|59|14549|doi:10.1021/acs.inorgchem.0c02363
DOI: 10.5517/ccdc.csd.cc25773s
title: CCDC 2002944: Experimental Crystal Structure Determination

description: Related Article: Deqiang Wang, Shichun Wang, Guohua Hou, Guofu Zi, Marc D. Walter|2020|Inorg.Chem.|59|14549|doi:10.1021/acs.inorgchem.0c02363
DOI: 10.5517/ccdc.csd.cc25772r
title: CCDC 2002943: Experimental Crystal Structure Determination

description: Related Article: Deqiang Wang, Shichun Wang, Guohua Hou, Guofu Zi, Marc D. Walter|2020|Inorg.Chem.|59|14549|doi:10.1021/acs.inorgchem.0c02363
DOI: 10.5517/ccdc.csd.cc25770p
title: CCDC 2002941: Experimental Crystal Structure Determination

description: Related Article: Deqiang Wang, Shichun Wang, Guohua Hou, Guofu Zi, Marc D. Walter|2020|Inorg.Chem.|59|14549|doi:10.1021/acs.inorgchem.0c02363
DOI: 10.5517/ccdc.csd.cc25f4h8
title: CCDC 2008629: Experimental Crystal Structure Determination

description: Related Article: Jasmin Simon, Anja Stammler, Jan Oldengott, Hartmut Bögge, Thorsten Glaser|2020|Inorg.Chem.|59|14615|doi:10.1021/acs.inorgchem.0c02644
DOI: 10.6084/m9.figshare.13175954
title: Deleted

description: Deleted
DOI: 10.6084/m9.figshare.13175954.v2
title: Deleted

description: Deleted
DOI: 10.6084/m9.figshare.13175954.v1
title: Test System Data Used for EGIES Risk Evaluation Considering Compressor Station Multiple Failure Modes

description: Test System Data Used for EGIES Risk Evaluation Considering Compressor Station Multiple Failure Modes
DOI: 10.6084/m9.figshare.12081147
title: Data for research on "Effect of plate length on subduction kinematics and slab geometry: Insights from buoyancy-driven analog subduction models".

description: Data for research on "Effect of plate length on subduction kinematics and slab geometry: Insights from buoyancy-driven analog subduction models".
DOI: 10.6084/m9.figshare.12081147.v24
title: Data for research on "Effect of plate length on subduction kinematics and slab geometry: Insights from buoyancy-driven analog subduction models".

description: Data for research on "Effect of plate length on subduction kinematics and slab geometry: Insights from buoyancy-driven analog subduction models".
DOI: 10.6084/m9.figshare.12081147.v23
title: Data for research on "Effect of plate length on subduction kinematics and slab geometry: Insights from buoyancy-driven analog subduction models".

description: Data for research on "Effect of plate length on subduction kinematics and slab geometry: Insights from buoyancy-driven analog subduction models".
DOI: 10.21421/d2/dsylhb/najk5x
title: Sorghum DArTSeq metadata.docx

description: :unav
DOI: 10.21421/d2/dsylhb/jpsoha
title: Sorghum single row SNP.zip

description: :unav
DOI: 10.21421/d2/dsylhb/1kotg4
title: Sorghum two row SNP.zip

description: :unav
DOI: 10.21421/d2/dsylhb
title: DArTSeq data on within accessions diversity of sorghum germplasm

description: This data set contains DArTSeq data of sorghum landraces (31) and wild (5) accessions, and 15 individuals within each accession were genotyped. The main objectives of this experiment were (i) to investigate the extent of diversity within and among accessions using DArTSeq derived SNPs, and (ii) to assess the minimum sample (population) size required to capture 95% of the alleles with an expected probability of 95%, from the least frequent allele or the frequency of the rarest allele for each accession. Data is in the DArT format as provided by Diversity Arrays Technology (DArT), Australia. The scope of this study aims to benefit genebank curators in understanding the dynamics of the population within and among accessions and devising proper sampling strategies (sample size) while regeneration, for effective genebank management and their utilization in crop improvement.
DOI: 10.5281/zenodo.4244203
title: Comparativa de l'evolució de la incidència de la Covid19-Sars2 a l'Estat Espanyol respecte del conjunt d'Europa

description: <strong>Amb la finalitat de poder fer una comparativa temporal de la incidència de la Covid19-Sars2 a l’Estat Espanyol respecte del conjunt dels països d’Europa, hem recollit les dades diàries del 20 d’Octubre reportades a ambdós territoris pel que fa a:</strong> <strong>Total cases (Número total de casos): sumatori de casos de positius acumulats.</strong> <strong>New Cases (Casos nous): número diari de casos positius reportats.</strong> <strong>Total Deaths (Número total de morts): sumatori de defuncions per Covid19 acumulades.</strong> <strong>New Deaths (Morts noves): número diari de defuncions per Covid19 reportats.</strong> <strong>Total Recovered (Número total de recuperats): sumatori de casos de pacients recuperats.</strong> <strong>New Recovered (Recuperats nous): número diari de casos de pacients recuperats.</strong> <strong>Active Cases (Casos actius): sumatori del número total de casos actius de Covid19.</strong> <strong>Serious, Critical (Casos crítics): sumatori del total de malalts de Covid19 en UCIs.</strong>
DOI: 10.5281/zenodo.4244197
title: EmERGE - Barcelona data

description: EmERGE - WP3 Barcelona data
DOI: 10.5281/zenodo.4244196
title: EmERGE - Barcelona data

description: EmERGE - WP3 Barcelona data
DOI: 10.18728/556.0
title: Trace organics and dissolved organic matter - study at "Rechter Randgraben"

description: This data set is related to the manuscript "Simultaneous attenuation of trace organic compounds and organic matter in streams: Comparison of surface water and the hyporheic zone", currently under review at Scientific Reports. For further information, contact Birgit M. Mueller (b.mueller@igb-berlin.de). Data from a field sampling campaign at two study sites at the "Rechter Randgraben", a side channel of the River Erpe (also called Neuenhagener Mühlenfließ) in September-October 2018. Upstream site located at: 52.479659 N, 13.635827 E Downstream site located at: 52.476437 N, 13.625765 E baro = ambient air SWup = surface water at upstream site SWdown = surface water at downstream site PWdown = pore water ini 25 cm sediment depth at downstream site (three measuring spots 1,2 and 3 with horizontal distance of 2 m along flow direction) File Parameter Where Description TrOCs_DOM_hydrology_data.csv air / water pressure, <br>air / water temperature, electrical conductivity in surface and pore water SWdown<br>SWup, SWdown, PWdown<br>SWup, SWdown, PWdown<br><br> measured with CTD divers (Van Essen Instruments B.V., Netherlands) TrOCs_DOM_chemistry_data.csv NH4+, NO3-, DOC, SO42-, FE2+, Mn4+, 17 pharmaceuticals, 7 dissolved organic matter compound classes SWup, SWdown, PWdown surface water samples taken with automatic water sampler (SWup), with tube fixed in water column (SWdown) or with steel sampling rods (PWdown) TrOCs_DOM_runoff_data.csv channel width, depth and total area, mean flow velocity, discharge SWdown Measured with MF pro, OTT Hydromet, Loveland, USA TrOCs_DOM_sediment_data.csv Sediment characterization: hydraulic conductivity, grain size distribution, thermal properties Sediment of river bed at downstream site Three sediment cores were taken, hydraulic conductivity measured with KSAT device (Meter Group, United States), thermal properties with KD2 Pro (Decagon Devices Inc., Pullman, WA, USA)
DOI: 10.21421/d2/ccsoz8/zsto1n
title: Pigeonpea DArTSeq metadata.docx

description: :unav
DOI: 10.21421/d2/ccsoz8/l66ohq
title: Pigeonpea single row SNP.zip

description: :unav
DOI: 10.21421/d2/ccsoz8/zwrzty
title: Pigeonpea two row SNP.zip

description: :unav
DOI: 10.21421/d2/ccsoz8
title: DArTSeq data on within accessions diversity of pigeonpea germplasm

description: This data set contains DArTSeq data of pigeonpea landraces (36), and 15 individuals within each accession were genotyped. The main objectives of this experiment were (i) to investigate the extent of diversity within and among accessions using DArTSeq derived SNPs, and (ii) to assess the minimum sample (population) size required to capture 95% of the alleles with an expected probability of 95%, from the least frequent allele or the frequency of the rarest allele for each accession. Data is in the DArT format as provided by Diversity Arrays Technology (DArT), Australia. The scope of this study aims to benefit genebank curators in understanding the dynamics of the population within and among accessions and devising proper sampling strategies (sample size) while regeneration, for effective genebank management and their utilization in crop improvement.
DOI: 10.6084/m9.figshare.13186532
title: Mapping Suitable Great Ape habitat in and around the Lobéké National Park, South-East Cameroon

description: The data contains great apes (chimpanzee and gorilla) occurrence points (csv file) from the Lobeke National Park and its surrounding forest management units. The data were prepared using detailed survey data obtainable from the IUCN APES database (http://apes.eva.mpg.de/). However, the raw data has been added to the folder: detail_survey_data. In addition to the survey data, GIS layers (predictor variables) used for modeling the occurrence data have been equally attached as Tiff files and Ascii grid files (.asc). The Tiff, ascii and csv files are in the folder: modeling_data<br>
DOI: 10.6084/m9.figshare.13180244
title: R0220_20180317a_videos

description: Rat 0220, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.13180244.v1
title: R0220_20180317a_videos

description: Rat 0220, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4141692
title: BAFF 60-mer and BAFF 60-mer-dissociating activities in serum, cord blood and cerebrospinal fluid

description: This dataset is related to "BAFF 60-mer, and differential BAFF 60-mer dissociating activities in human serum, cord blood and cerebrospinal fluid" (Eslami M, Meinl E, Eibel H, Willen L, Donzé O, Distl O, Schneider H, Speiser DE, Tsiantoulas D, Yalkinoglu Ö, Samy E, Schneider P).
DOI: 10.5281/zenodo.4141691
title: BAFF 60-mer and BAFF 60-mer-dissociating activities in serum, cord blood and cerebrospinal fluid

description: This dataset is related to "BAFF 60-mer, and differential BAFF 60-mer dissociating activities in human serum, cord blood and cerebrospinal fluid" (Eslami M, Meinl E, Eibel H, Willen L, Donzé O, Distl O, Schneider H, Speiser DE, Tsiantoulas D, Yalkinoglu Ö, Samy E, Schneider P).
DOI: 10.5285/2f98e806-1713-4ac9-8c91-bbf8e1a5ee7d
title: UKGEOS Glasgow Geothermal Ground Gas, 2018 and 2019 Surveys.

description: Data produced during three BGS ground gas surveys (August 2018, and May and October 2019) of up to 83 point measurements across four pre-determined locations within the UK Geoenergy Observatories (UKGEOS) Glasgow site, located to the south of the Cuningar Loop Woodland Park. The dataset includes measurements of CH4 and CO2 flux between the ground surface and lower atmosphere, along with concentrations of CO2, O2, H2, H2S and ‘residual balance’ in near surface ground gas measured at c.70 cm below ground level. Further details about the dataset can be found in the accompanying report. http://nora.nerc.ac.uk/id/eprint/528737/
DOI: 10.6084/m9.figshare.13187096
title: Supplementary Material for: Effect of Vasopressin on the Hypothalamic-Pituitary-Adrenal Axis in ADPKD Patients during V2 Receptor Antagonism

description: <b><i>Background:</i></b> Patients with autosomal dominant polycystic kidney disease (ADPKD) are treated with a vasopressin V2 receptor antagonist (V2RA) to slow disease progression. This drug increases vasopressin considerably in these patients with already elevated baseline levels. Vasopressin is known to stimulate the hypothalamic-pituitary-adrenal (HPA) axis through V1 and V3 receptor activation. It is unknown whether this increase in vasopressin during V2RA treatment affects glucocorticoid production. <b><i>Methods:</i></b> Twenty-seven ADPKD patients were studied on and off treatment with a V2RA and compared to age- and sex-matched healthy controls and IgA nephropathy patients, the latter also matched for kidney function. Vasopressin was measured by its surrogate copeptin. Twenty-four-hour urinary excretions of cortisol, cortisone, tetrahydrocortisone, tetrahydrocortisol, allotetrahydrocortisol, and the total glucocorticoid pool were measured. <b><i>Results:</i></b> At baseline, ADPKD patients demonstrated a higher copeptin concentration in comparison with healthy controls, while urinary excretion of cortisol and cortisone was lower (medians of 0.23 vs. 0.34 μmol/24 h, <i>p</i> = 0.007, and 0.29 vs. 0.53 μmol/24 h, <i>p</i> &lt; 0.001, respectively). There were no differences in cortisol and cortisone excretion compared to IgA nephropathy patients. Cortisol, cortisone, and total glucocorticoid excretions correlated with kidney function (<i>R</i> = 0.37, 0.58, and 0.19, respectively; all <i>p</i> &lt; 0.05). Despite that V2RA treatment resulted in a 3-fold increase in copeptin, only cortisone excretion increased (median of 0.44 vs. baseline 0.29 μmol/24 h, <i>p</i> &lt; 0.001), whereas no changes in cortisol or total glucocorticoid excretion were observed. <b><i>Conclusions:</i></b> Increased concentration of vasopressin in ADPKD patients at baseline and during V2RA treatment does not result in activation of the HPA axis. The impaired glucocorticoid production in these patients is related to their degree of kidney function impairment.