cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/3wvtjv7cwb.1
title: Manual Calculation of Pharmaceutical Inventory Logistic

description: This data consisted of detailed drug inventory logistic set at RA Basoeni Hospital, Mojokerto. The research question was to identify the efficient and effective drug inventory planning method taking into consideration the opportunity lost and opportunity cost of stagnant and shortage drugs. EOQ and MMSL had been selected as the methods for comparison with the existing consumption method. We found EOQ produced the lowest opportunity cost for stagnant drugs and the lowest opportunity loss for shortage drugs.
DOI: 10.17632/y7nhhgz7fj.1
title: New Insights of Transcranial Direct Current Stimulation (tDCS) for Preventing Amphetamine Use and Relapse: Results of a 6-month Follow-up
DOI: 10.17632/h3x8hjyxzz.1
title: The RNA-binding protein YBX3 controls amino acid import by regulating SLC mRNA abundance. A Cooke et al 2019

description: Raw Western Blot images for all figures and replicates in the paper.
DOI: 10.17632/mdmz47mg9r.1
title: Add-in: Short Time Series Forecasting Tool

description: This add-in implements five models to forecast short time series and computes their associated performance metrics. It allows users to make comparisons among the five models automatically. Copyrights (c) 2018 Vakaramoko Diaby & Richard K Moussa
DOI: 10.17632/8rv2zvsn2k.2
title: Naming in Frontotemporal Dementia and its neural correlates

description: The study sought to understand the basis for naming problems in the behavioural form of frontotemporal dementia (bvFTD) through direct comparison with semantic dementia (SD) and examination of neural correlates. The data addresses the question whether naming problems in bvFTD arise secondary to patients' frontal executive disorder or occur independently as additional linguistic deficits. The data show test scores for 71 patients with bvFTD and 32 with SD on the Graded Naming test (a published challenging test of naming), the Manchester naming test (a less demanding test of picture naming) and a word-picture matching test that uses the same stimuli as the Manchester naming test (10 pictures of animals, 10 of fruits/vegetables, 10 articles of clothing and 10 household objects). The nature of naming errors is indicated for each test item and are summarised as separate variables. Naming errors are classified in terms of the following types: semantic (e.g. "dog" for rabbit), superordinate category (e.g. "animal" for rabbit), associative (this includes descriptions of an object's function, gestural demonstrations of its use and associated information e.g. "in Australia" for kangaroo), visually related misidentifications, omissions (which includes generic responses that convey insufficient information to convey recognition) and viable alternative responses (e.g. "coat" for jacket). The data also shows independent (blind) visual ratings of magnitude of atrophy based on coronal magnetic resonance scan images. Different regions of the frontal and temporal lobes are rated in accordance with the scheme defined by Davies et al Neuroradiology, 2009, 51, 491-503. Background clinical data includes scores on standard executive tests: verbal fluency, Weigls block sorting and Brixton spatial anticipation test. BvFTD patients, as expected, perform better than the SD group on the language test, but deficits are identified in about half of patients. There are strong inverse correlations between naming scores in both groups and atrophy in temporal lobe structures, particularly the temporal pole and fusiform gyrus, whereas comprehension in SD, measured by word picture matching, correlates more strongly with posterior than anterior temporal lobe atrophy. Error analysis shows a significant relationship in both groups between associative-type responses and temporal pole atrophy, whereas 'don't know' responses, suggestive of a loss of conceptual knowledge, correlates with more posterior temporal regions. There is some correlation in bvFTD between naming and executive performance but not frontal lobe atrophy. The data support the view that naming problems in bvFTD can arise independently of 'frontal' executive deficits and highlight clinical overlap with bvFTD. The findings have implications for the hub-and-spoke model of semantic memory and argue against the notion of the temporal pole as a semantic hub.
DOI: 10.17632/fpf3ywzy6d.1
title: FinolE_submission_rawdata

description: raw DENV genomic data for Finol E. & Ooi EE. Iscience submision
DOI: 10.17632/bc5dgf4xdf.1
title: Molecular descriptors for antimalaria Drug-Decorated Nanoparticles

description: ChEMBL data for drugs and nanoparticle descriptors with antimalarial activity has been used to create Machine Learning models for antimalarial activity prediction. The scripts to build the models are available at https://github.com/d-bcarrue/NanoDrugsMalaria.
DOI: 10.17632/wgr6fhz4zx.1
title: The number of sexual partners and personality

description: Although personality has been tested as a predictor of sexual behaviors, little is known about the contribution of personality to the number of sexual partners. This study aimed to examine the models of association between personality traits and the number of lifetime sexual partners in various groups of sexual orientation. A web-based questionnaire was administered in Poland to a sample of 768 adults aged between 16 and 42 years old (M = 21.06, SD = 3.57), including 61% women (n = 468). Of the participants, 61% identify themselves as heterosexual, 22% as bisexual and 17% as homosexual. A series of multiple regression analyses were conducted to find the best predictors for the association between personality traits (Extraversion, Agreeableness, Emotional Stability, Intellect/Imagination, Consciousness, and Sensation Seeking) and the number of lifetime sexual partners. Age, gender, and sexual identification were also included in the analysis. Higher level of extraversion and lower level of agreeableness are the best predictors of a great number of sexual partners. Sexual orientation is a moderator of the relation between emotional stability and the number of sexual partners, whereas gender is a moderator of the association between extraversion and number of sexual partners. Keywords: Big-Five personality traits; coming out; sensation-seeking; sexual identity; number of lifetime sexual partners.
DOI: 10.17632/ytx83h5vff.1
title: Resolution-exchanged simulations reveal ribosomal frameshifting via subunit rolling. Chang et al.

description: We are interested in modeling the perturbed dynamics of the ribosome upon encountering a stable mRNA pseudoknot (human telomerase dU177 variant), and how the resulting conformational changes lead to programmed ribosomal frameshifting. First, all of the missing subunits of the non-rotated- and rotated-state ribosomes were modeled (provided here as PDB files). The intrinsic dynamics of these ribosome structures were obtained with anisotropic network model (ANM; codes available on https://github.com/Yuan-Yu/bioStructureM). Second, the pseudoknot structure was pulled into the mRNA entrance of the ribosome with steered molecular dynamics (SMD) simulations (trajectory provided here). The interaction forces between the pseudoknot and the mRNA entrance were calculated from SMD simulations, and combined with intrinsic dynamics from ANM using linear response theory (LRT; codes available on https://github.com/Yuan-Yu/bioStructureM). Interestingly, a rolling motion of 30S was observed. Finally, the tRNAs and their surroundings of the rolled structure were equilibrated with MD simulations. After equilibration, production runs of MD simulations revealed spontaneous tRNA slippage (trajectory provided here), indicating that pseudoknot-induced subunit rolling is the motion that triggers programmed ribosomal frameshifting.
DOI: 10.17632/4b8yx5j876.1
title: PET-PCL blends for long-term controlled-release_Raw data

description: Raw data for PET-PCL blends
DOI: 10.15468/rihyuy
title: A new species of the emesine assassin bug genus Emesopsis (Hemiptera: Heteroptera: Reduviidae) from Vietnam
DOI: 10.17632/tbfn3fzbm8.1
title: Data for "Improved predictability of the Indian Ocean Dipole using seasonally modulated ENSO forcing forecasts"

description: Abstract of associated article: Despite recent progress in seasonal forecast development, the predictive skill for the Indian Ocean Dipole (IOD) remains typically limited to a lead time of one season or less in both dynamical and empirical models. Here we develop a simple stochastic-dynamical model (SDM) to predict the IOD using seasonally modulated El Niño-Southern Oscillation (ENSO) forcing together with a seasonal modulation of the Indian Ocean coupled ocean-atmosphere feedback. The SDM, with either observed or forecasted ENSO forcing, exhibits generally higher skill and longer lead times for predicting IOD events than the operational Climate Forecast System Version 2 and the SINTEX system. These results affirm our hypothesis that operational IOD predictability beyond persistence is largely controlled by ENSO predictability and the signal-to-noise ratio of the system. Therefore, potential future ENSO improvements in models could also translate to more skillful IOD predictions.
DOI: 10.15468/aokrwo
title: A new species of anole from Parque Nacional Volcán Arenal, Costa Rica (Reptilia, Squamata, Dactyloidae: Norops)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Köhler, Gunther, Vargas, Joseph (2019): A new species of anole from Parque Nacional Volcán Arenal, Costa Rica (Reptilia, Squamata, Dactyloidae: Norops). Zootaxa 4608 (2): 261-278, DOI: https://doi.org/10.11646/zootaxa.4608.2.4
DOI: 10.17632/cgjf78m9hy.2
title: Evolutionary dynamics and fixation probabilities in stirred populations

description: One folder contains the code with which all simulations can be reproduced. The second folder contains all the simulation results necessary for the reproduction of the figures in the research article of the same title.
DOI: 10.17632/6htjnfs78b.1
title: Sandwich Analytics: A Dataset Comprising One Year’s Weekly Sales Data Correlated with Crime, Demographics, and Weather

description: Data collected from a quick-serve sandwich chain over one year provide opportunity for market, sociographic, meteorologic, and other factors impacting sales. The weekly sales table contains over 140,000 rows which each represent summary statistics for the sales of an individual menu item in one store during one week of the year. The data were collected from the point-of-sale system of 19 stores. Secondary data regarding weather patterns, population, location, competition, and crime were gathered and integrated with the original data set.
DOI: 10.17632/727z3vhhf6.1
title: Mitigation of amphibian disease requires a stronger connection between research and management. Supplementary material.

description: Data file 1. Complete list of reviewed publications.
DOI: 10.17632/p69jkxk4y2.1
title: Adaptive management of species recovery programs: a real-world application for an endangered amphibian. Supplementary material.

description: Appendix 1. R code for simulations and data analysis.
DOI: 10.5281/zenodo.2671494
title: Orbitrap data: Arsenolipids are not uniformly distributed within two brown macroalgal species Saccharina latissima and Alaria esculenta.

description: ESI-orbitrap-MS raw data from project SilhouetteOfSeaweed. Possible to look for e.g. other arsenolipid species that had not been discovered at the time of publication. Analysed on Thermo Orbitrap. .raw files. Full scan from 100-1400. Further details in paper: Arsenolipids are not uniformly distributed within two brown macroalgal species <em>Saccharina latissima</em> and <em>Alaria esculenta.</em> Published in Analytical and Bioanalytical Chemistry (2019) - https://doi.org/10.1007/s00216-019-01907-x
DOI: 10.17632/nrcg43224r.1
title: Relationship of Auditory Electrophysiological Responses to Magnetic Resonance Spectroscopy Metabolites in Early Phase Psychosis

description: This project aimed to examine the relationship between the concentrations of various neural metabolites (labeled Cre, mI, NAA, GPCPCH, and GluGln in the attached dataset) measured via magnetic resonance spectroscopy (MRS) and two event related potentials, including amplitude of the mismatch negativity (MMN; labeled FZMMNvoltage in the attached dataset) and power of the auditory steady state response (ASSR; labeled FZ40Hzpower in the attached dataset) to 40 Hz click stimuli in individuals with early phase psychosis (EPP). Group differences in metabolite concentrations, MMN amplitude, and 40 Hz ASSR power were also compared relative to healthy control participants. Demographic (age, sex), cognitive (from the Brief Assessment of Cognition in Schizophrenia, BACS composite), and symptom data (from the Positive and Negative Syndrome Scale, PANSS) is also available. Key findings included elevated concentration of several metabolites in individuals with EPP (i.e., Glx, Cre, Cho) relative to controls, and no difference in MMN amplitude or 40 Hz ASSR power. In individuals with EPP, increased metabolite levels were associated with smaller MMN amplitude. A weaker association between increased metabolite levels and 40 Hz ASSR power was found. Neither the MRS metabolites nor electrophysiological measures were correlated with symptom severity, age, cognitive function, or medication dosage.
DOI: 10.17632/z8rh2jjkmk.1
title: FDI_IC_TW2CN_1999_2014

description: FDI amount of IC design companies from Taiwan to China, from 1999 to 2014
DOI: 10.5281/zenodo.2659735
title: Data for: Increasing plant group productivity through latent genetic variation for cooperation

description: Technologies for crop breeding have become increasingly sophisticated, yet it remains unclear whether these advances are sufficient to meet future demands. A major challenge with current crop selection regimes is that they are often based on individual performance. This tends to select for plants with “selfish” traits, which leads to a yield loss when they compete in high-density stands. In traditional breeding, this well-known “tragedy of the commons” has been addressed by anticipating ideotypes with presumably preferential characteristics. However, this approach is limited to obvious architectural and physiological traits, and it depends on a mechanistic understanding of how these modulate growth and competition. Here, we developed a general and simple method for the discovery of alleles promoting cooperation of plants in stands; it is based on the game-theoretical premise that alleles increasing cooperation incur a cost to the individual but benefit the monoculture group. Testing the approach using the model plant <em>Arabidopsis thaliana, </em>we found a single major effect locus where the rarer allele was associated with increased levels of cooperation and superior monoculture productivity. We show that the allele likely affects a pleiotropic regulator of growth and defense, since it is also associated with reduced root competition but higher race-specific resistance against a specialized parasite. Even though cooperation is considered evolutionarily unstable, conflicting selective forces acting on a pleiotropic gene might thus maintain latent genetic variation for it in nature. Such variation, once identified in a crop, could be rapidly leveraged in modern breeding programs and provide efficient routes to increase yields.
description: Data from https://www.biorxiv.org/content/10.1101/641449v1
description: {"references": ["https://www.biorxiv.org/content/10.1101/641449v1"]}
DOI: 10.5281/zenodo.2671493
title: Orbitrap data: Arsenolipids are not uniformly distributed within two brown macroalgal species Saccharina latissima and Alaria esculenta.

description: ESI-orbitrap-MS raw data from project SilhouetteOfSeaweed. Possible to look for e.g. other arsenolipid species that had not been discovered at the time of publication. Analysed on Thermo Orbitrap. .raw files. Full scan from 100-1400. Further details in paper: Arsenolipids are not uniformly distributed within two brown macroalgal species <em>Saccharina latissima</em> and <em>Alaria esculenta.</em> Published in Analytical and Bioanalytical Chemistry (2019) - https://doi.org/10.1007/s00216-019-01907-x
DOI: 10.17632/g4yc9wpvff.1
title: Influence of changes in electronic structure on magnetocrystalline anisotropy of YCo5 and related compounds

description: Calculation steps (general): non spin-polarized (+optimization and relaxation), spin-polarized and spin-orbit coupling (+optimization and relaxation). If the structure has been optimized before, optimization can be omitted. For some cases spin-polarization and SOC are better carried out separately. For PrCo5, non spin-polarized makes little sense, since the magnetic structure is canted. Some times the optimization and relaxation calculations are carried out simultaneously. The the final calculations are for two crystallographic directions (to calculate magnetocrystalline anisotropy energy). CHGCAR has the converged densities and charges (contour plots), DOS plots are calculated from vasprun.xml and energies are read from OUTCAR. File 1) 1_hcp_Co - total energy calculations and the optimized and relaxed structures. File 2) 2_Co5 - total energy calculations and the optimized and relaxed structures. File 3) 3_Co6 - the total energy calculations and the optimized and relaxed structures. File 4) 4_YCo5 - total energy calculations and the optimized and relaxed structures, but as many calculations were carried out for YCo5, not all results are taken from this calculation. But the optimized structure from this calculation was used as a starting point for other YCo5 calculations. File 5) 5_YCo5_d(c) - total energy calculation with lattice parameter "c" varied. File 6) 6_YCo5_d(a) - total energy calculation with lattice parameter "a" varied. File 7) 7_YCo4Fe_2c - total energy calculation of substituted compound with Fe at T(2c) site, optimized, relaxed. File 8) 8_YCo4Fe_3g - total energy calculation of substituted compound with Fe at T(3g) site, optimized, relaxed. File 9) 9_YCo4Cu_2c - total energy calculation of substituted compound with Cu at T(2c) site, optimized, relaxed. File 10) 10_YCo4Cu_3g - total energy calculation of substituted compound with Cu at T(3g) site, optimized, relaxed. File 11) 11_PrCo5 - total energy calculation. File 12) 12_SmCo5 - total energy calculation, no optimization or relaxation. File 13) 13_SmCo5_opt - total energy calculation, optimized and relaxed. File 14) 14_SmCo4Fe_3g - total energy calculation of substituted compound with Fe at T(3g) site, optimized, relaxed. File 15) 15_SmCo4Cu_2c - total energy calculation of substituted compound with Cu at T(2c) site, optimized, relaxed.
DOI: 10.17632/k957gctr9d.1
title: Introductory Guide: Calculating a deprivation index using census data

description: Deprivation indexes have widespread use in academic research and in local and national government applications. It is useful for people to understand their construction and to be able to calculate their own measures. We provide an overview of the background to area based deprivation measures. We detail and explain a series of steps taken to calculate a deprivation index for small areas in Australia. We use data from Australia’s 2016 Census of Population and Housing for the SA2 level of geography. After defining the set of variables used as inputs, we emulate the steps taken to calculate other census based deprivation indexes. The resulting scheme correlates closely with an official, but more sophisticated deprivation measure, suggesting that simple schemes have utility. There are choices to be made for input variables and for some of the detail of the calculations. Researchers can follow the steps we describe to develop their own measures. The files we provide here will enable people to reproduce the deprivation measures in SPSS, R and Stata.
DOI: 10.17632/yt4553jcbs.1
title: Results of FEM simulation

description: The data set contains simulation results for the inverse estimation of thermal conductivity, specific heat capacity and absorptivity of the material.
DOI: 10.17632/93726brcbw.1
title: Clinical study of the innervation of the anterior hard palate

description: The conventional nasopalatine nerve block (NPNB) is commonly used to obtain anaesthesia in the anterior portion of the palate. Unfortunately, NPNB cannot always yield a satisfied anesthesia effect at the palatal gingiva of anterior teeth, which reflects the controversy about the innervation of this area and the distribution of nasopalatine nerve. The present research was designed to study the innervation of the anterior part of hard palate (AHP) in patients of different ages. 182 children with mixed dentition and 219 patients with permanent dentition who were indicated to local anesthesia during treatment were included into this study. Patients in mixed dentition were randomly divided into group A1 and group A2, and received NPNB or bilateral greater palatine nerve block (BGPNB) respectively. Patients in permanent dentition were divided into adolescent group (range 13-18 years) and adult group (over the age of 19 years), and all accepted BGPNB. Using Von Frey hairs, the anesthetic efficiency were examined by testing the pain sensation of the palatal mucosa pre- and post-anesthetically. All the data were analyzed by Student's t tests and Pearson's chi-square tests. For children with mixed dentition, BGPNB was likely to result better anesthesia at the AHP than NPNB did (p&lt;0.05), except the incisive papilla, in which the anesthetic effect of the NPNB was significantly superior to that of the BGPNB. Meanwhile, BGPNB was found more effective for anesthesia of AHP in children than that in people with permanent dentition, i.e., adolescents and adults (p&lt;0.05). However, there was no significant difference in anesthetic effect of AHP between adolescent and adult. The results of present study indicated that the sensation of anterior hard palate is mainly dominated by the greater palatine nerve in childhood and gradually shifts to nasopalatine nerve accompanied with the development of maxilla and tooth replacement. It seemed that the nasopalatine nerve undergoes a process of secondary development through adolescence. Such converting of innervation should be accounted in local anesthesia of AHP area.