cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r2kr36
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus vestalis (Geoffroy, 1785)",
 "Year 1970-2000"
 ]
}

 The dataset includes 440 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0169272-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y9jar
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hermannia cernua Thunb."
 ]
}

 The dataset includes 22 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240994-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23vbb6
title: Occurrence Download

description: A dataset containing 191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neptis rivularis (Scopoli, 1763)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 191 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196157-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npyqbb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hereroa teretifolia L.Bolus"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240972-230224095556074/datasets/export for details.
DOI: 10.5281/zenodo.10077641
title: PTMoreR: a motif-centric analysis enabling cross-species PTM mapping and comparative phosphoproteomics across mammals

description: Supplementary Table S2-S7 for PTMoreR

Table S2. The 115,179 and 42,997 phosphorylation sites (P-sites) for human and mouse phosphoproteomes obtained from two recent large-scale studies 1,2. Two sheet names here are marked as “Human.identified” and “Mouse.identified” respectively.

Table S3. The information and organism identifies for the 129 mammalian species downloaded from UniProt (http://www.uniprot.org/) 3.

Table S4. The features and the detectability matrix of P-sites in the Human.identified phosphoproteome data across species. Column 1 to 3 are UniProt ID, residue, and P-site position, respectively. Column 4 to 17 are the annotated phosphoproteome features that used in the Figure 2C, Figure 4B, 4E, 4F, Supplementary Figure S4 and S7B-S7C. Column 18 to 146 are the detectability matrix, in which the values are 0 for those sites not mapped in corresponding species and 1 for those mapped. The window similarity scores are >= 8.

Table S5. The GO terms with the BH adjusted P value < 0.01 in one of Q1-Q5 segments and > 0.05 in the other four from the GO enrichment analysis based on corresponding phosphoproteins.

Table S6. The results with BH adjusted P value < 0.01 from the kinase enrichment analysis in each of Q1-Q5 segments.

Table S7. The phosphorylation expression data and statistical results from 10 common mammalian species (Euarchontoglires (i.e., Human, Rat, Rabbit, Monkey) and Laurasiatheria (i.e., Cow, Horse, Pig, Dog, Cat, Sheep)) 4.

 

References

1.     Giansanti, P., Samaras, P., Bian, Y., Meng, C., Coluccio, A., Frejno, M., Jakubowsky, H., Dobiasch, S., Hazarika, R.R., Rechenberger, J. et al. (2022) Mass spectrometry-based draft of the mouse proteome. Nat Methods, 19, 803-811.

2.     Ochoa, D., Jarnuczak, A.F., Vieitez, C., Gehre, M., Soucheray, M., Mateus, A., Kleefeldt, A.A., Hill, A., Garcia-Alonso, L., Stein, F. et al. (2020) The functional landscape of the human phosphoproteome. Nat Biotechnol, 38, 365-373.

3.     UniProt, C. (2021) UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res, 49, D480-D489.

4.     Ba, Q., Hei, Y., Dighe, A., Li, W., Maziarz, J., Pak, I., Wang, S., Wagner, G.P. and Liu, Y. (2022) Proteotype coevolution and quantitative diversity across 11 mammalian species. Sci Adv, 8, eabn0756.
DOI: 10.5281/zenodo.11057546
title: PTMoreR: a motif-centric analysis enabling cross-species PTM mapping and comparative phosphoproteomics across mammals

description: Supplementary Table S2-S7 for PTMoreR

Table S2. The 115,179 and 42,997 phosphorylation sites (P-sites) for human and mouse phosphoproteomes obtained from two recent large-scale studies 1,2. Two sheet names here are marked as “Human.identified” and “Mouse.identified” respectively.

Table S3. The information and organism identifies for the 129 mammalian species downloaded from UniProt (http://www.uniprot.org/) 3.

Table S4. The features and the detectability matrix of P-sites in the Human.identified phosphoproteome data across species. Column 1 to 3 are UniProt ID, residue, and P-site position, respectively. Column 4 to 17 are the annotated phosphoproteome features that used in the Figure 2C, Figure 4B, 4E, 4F, Supplementary Figure S4 and S7B-S7C. Column 18 to 146 are the detectability matrix, in which the values are 0 for those sites not mapped in corresponding species and 1 for those mapped. The window similarity scores are >= 8.

Table S5. The GO terms with the BH adjusted P value < 0.01 in one of Q1-Q5 segments and > 0.05 in the other four from the GO enrichment analysis based on corresponding phosphoproteins.

Table S6. The results with BH adjusted P value < 0.01 from the kinase enrichment analysis in each of Q1-Q5 segments.

Table S7. The phosphorylation expression data and statistical results from 10 common mammalian species (Euarchontoglires (i.e., Human, Rat, Rabbit, Monkey) and Laurasiatheria (i.e., Cow, Horse, Pig, Dog, Cat, Sheep)) 4.

 

References

1.     Giansanti, P., Samaras, P., Bian, Y., Meng, C., Coluccio, A., Frejno, M., Jakubowsky, H., Dobiasch, S., Hazarika, R.R., Rechenberger, J. et al. (2022) Mass spectrometry-based draft of the mouse proteome. Nat Methods, 19, 803-811.

2.     Ochoa, D., Jarnuczak, A.F., Vieitez, C., Gehre, M., Soucheray, M., Mateus, A., Kleefeldt, A.A., Hill, A., Garcia-Alonso, L., Stein, F. et al. (2020) The functional landscape of the human phosphoproteome. Nat Biotechnol, 38, 365-373.

3.     UniProt, C. (2021) UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res, 49, D480-D489.

4.     Ba, Q., Hei, Y., Dighe, A., Li, W., Maziarz, J., Pak, I., Wang, S., Wagner, G.P. and Liu, Y. (2022) Proteotype coevolution and quantitative diversity across 11 mammalian species. Sci Adv, 8, eabn0756.
DOI: 10.15468/dl.t36nbt
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens cernua L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206957-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rn3ax
title: Occurrence Download

description: A dataset containing 1988 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ipomoea pes-tigridis L."
 ]
}

 The dataset includes 1988 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254024-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqkvz4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Byctiscus congener Voss, 1930",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196183-220831081235567/datasets/export for details.
DOI: 10.15468/dl.tsfe7c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hermannia citrusdalensis Pillans"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240997-230224095556074/datasets/export for details.
DOI: 10.15468/dl.2g8pjd
title: Occurrence Download

description: A dataset containing 655 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Entandrophragma utile (Dawe & Sprague) Sprague, Entandrophragma cylindricum (Sprague) Sprague)"
 ]
}

 The dataset includes 655 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262958-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kaz5k
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callicilix abraxata Butler, 1885",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196199-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3bzhr
title: Occurrence Download

description: A dataset containing 788969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthoxanthum odoratum L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 788969 records from 2204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262926-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17155790
title: Deterministic soliton microcombs in Cu-free photonic integrated circuits

description: Data and code used to produce the figures in "Deterministic soliton microcombs in Cu-free photonic integrated circuits".
DOI: 10.15468/dl.q4v2ne
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anemone hybrida",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016375-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgf83h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microcardium panamense",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016374-250914085247600/datasets/export for details.
DOI: 10.5281/zenodo.17155803
title: Crash Report Sampling System (CRSS) Processed Data – rfars

description: The General Estimates System (GES), redesigned as the Crash Report Sampling System (CRSS) in 2016, is a nationally representative sample of police-reported motor vehicle crashes in the U.S., maintained by the National Highway Traffic Safety Administration (NHTSA). While the raw GES/CRSS data are publicly available, they are distributed in formats that require significant preprocessing before analysis. This dataset provides a processed version of the GES/CRSS database (2014-2023), optimized for immediate use in R, Python, Excel, and other modern data tools. It was prepared by the rfars R package, enabling researchers, policymakers, and educators to access and analyze crash data more efficiently and reproducibly.

This dataset is provided in three different file formats to support a wide range of users and analysis environments:



CSV (.csv) - a plain text format, with each of the five tables saved separately. These files are the most universally compatible and can be opened directly in Excel, though they are larger.

Parquet (.parquet) - a modern, compressed, cross-platform columnar format. Each of the five tables is provided separately (fars_accident.parquet, fars_vehicle.parquet, etc.). This version is recommended for Python, SQL, and advanced R users, as it is smaller than CSV and loads quickly in most data science environments.

RDS (.rds) - a native R format containing the full dataset as a list of five related tables (accident, vehicle, person, drugs, distract). This version is recommended for R users, since it can be loaded in one step with readRDS() and preserves all variable types exactly as processed.
DOI: 10.5517/ccdc.csd.cc2h11g2
title: CSD 2294913: Experimental Crystal Structure Determination

description: Related Article: Yulia S. Gokhfeld, Natalia V. Kazak, Anastasia S. Tarasova, Aleksandr S. Sukhikh, Dmitry A. Velikanov, Evgeniy V. Eremin, Oleg A. Kondratev, Anna O. Belyaeva, Sergey Yu. Gavrilkin, Alexander D. Vasilieva, Sergey G. Ovchinnikov|2025|Dalton Trans.|54|13271|doi:10.1039/D5DT01230A
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxgg6
title: CCDC 2172308: Experimental Crystal Structure Determination

description: Related Article: Biswarup Dutta, Ibtesham Tarannum, Zvonko Jaglicic, Saurabh Kumar Singh, Debashis Ray|2025|Dalton Trans.|54|13166|doi:10.1039/D4DT03529A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxgd4
title: CCDC 2172306: Experimental Crystal Structure Determination

description: Related Article: Biswarup Dutta, Ibtesham Tarannum, Zvonko Jaglicic, Saurabh Kumar Singh, Debashis Ray|2025|Dalton Trans.|54|13166|doi:10.1039/D4DT03529A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxgh7
title: CCDC 2172309: Experimental Crystal Structure Determination

description: Related Article: Biswarup Dutta, Ibtesham Tarannum, Zvonko Jaglicic, Saurabh Kumar Singh, Debashis Ray|2025|Dalton Trans.|54|13166|doi:10.1039/D4DT03529A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxgj8
title: CCDC 2172310: Experimental Crystal Structure Determination

description: Related Article: Biswarup Dutta, Ibtesham Tarannum, Zvonko Jaglicic, Saurabh Kumar Singh, Debashis Ray|2025|Dalton Trans.|54|13166|doi:10.1039/D4DT03529A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxgf5
title: CCDC 2172307: Experimental Crystal Structure Determination

description: Related Article: Biswarup Dutta, Ibtesham Tarannum, Zvonko Jaglicic, Saurabh Kumar Singh, Debashis Ray|2025|Dalton Trans.|54|13166|doi:10.1039/D4DT03529A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltd50
title: CCDC 2407682: Experimental Crystal Structure Determination

description: Related Article: Deepak Sharma, Vijesh Kumar Joshi Tomar, Raj Kumar Joshi|2025|Chem.Commun.|61|13964|doi:10.1039/D5CC03270A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m2v1m
title: CCDC 2415800: Experimental Crystal Structure Determination

description: Related Article: Hua Tong, Jiali Fan, Haibo Li, Wei Liu, Gangfeng Ouyang|2025|Inorg.Chem.|64|17771|doi:10.1021/acs.inorgchem.5c02184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m3xh5
title: CCDC 2416837: Experimental Crystal Structure Determination

description: Related Article: Cheng Gao, Yuan Li, Gen Luo, Qijian Ni|2025|Org.Lett.|27|9576|doi:10.1021/acs.orglett.5c02276
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ky1td
title: CCDC 2381414: Experimental Crystal Structure Determination

description: Related Article: Beyhan Yiğit, Muhittin Önderci, Merve İzmirli, Selami Günal, Hande Karabıyık, Murat Yiğit, İsmail Özdemir|2025|Polyhedron|281|117754|doi:10.1016/j.poly.2025.117754
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n8y0x
title: CSD 2451449: Experimental Crystal Structure Determination

description: Related Article: Yulia S. Gokhfeld, Natalia V. Kazak, Anastasia S. Tarasova, Aleksandr S. Sukhikh, Dmitry A. Velikanov, Evgeniy V. Eremin, Oleg A. Kondratev, Anna O. Belyaeva, Sergey Yu. Gavrilkin, Alexander D. Vasilieva, Sergey G. Ovchinnikov|2025|Dalton Trans.|54|13271|doi:10.1039/D5DT01230A
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.5awraz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nemocardium enigmaticum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016376-250914085247600/datasets/export for details.
DOI: 10.5517/ccdc.csd.cc2n8y1y
title: CSD 2451450: Experimental Crystal Structure Determination

description: Related Article: Yulia S. Gokhfeld, Natalia V. Kazak, Anastasia S. Tarasova, Aleksandr S. Sukhikh, Dmitry A. Velikanov, Evgeniy V. Eremin, Oleg A. Kondratev, Anna O. Belyaeva, Sergey Yu. Gavrilkin, Alexander D. Vasilieva, Sergey G. Ovchinnikov|2025|Dalton Trans.|54|13271|doi:10.1039/D5DT01230A
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nbqmc
title: CCDC 2453173: Experimental Crystal Structure Determination

description: Related Article: Yingchao Wang, Xiaohe Miao, Lei Sun|2025|CSD Communication|||
description: Related Article: Yingchao Wang, Xiaohe Miao, Lei Sun|2025|CrystEngComm|27|5848|doi:10.1039/D5CE00534E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2nbqnd
title: CCDC 2453174: Experimental Crystal Structure Determination

description: Related Article: Yingchao Wang, Xiaohe Miao, Lei Sun|2025|CSD Communication|||
description: Related Article: Yingchao Wang, Xiaohe Miao, Lei Sun|2025|CrystEngComm|27|5848|doi:10.1039/D5CE00534E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.