cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12192846
title: Data and scripts for "The role of stochasticity in fungal community assembly – explaining apparent stochasticity with field experiments"

description: The results presented in the manuscript “The role of stochasticity in fungal community assembly – explaining apparent stochasticity by field experiments” can be reproduced by the data and scripts provided in this repository.

Concerning the analysis of observational data:

·        The file ObservationalData.RData includes all data: XData is the dataframe including the predictors, and t is the vector of responses (F. rosea occurrences).

·        The script O1_model_observational_data.R defines the models, fits the models, and computes model fits based on cross-validation. The results are saved into a file.

·        The script O2_show_results_observational_data.R loads the results saved by the previous script, and outputs the results reported in the manuscript.

Concerning the analysis of experimental data:

·        The file ExperimentalData.RData includes all data: the dataframe meta includes the relevant predictors, otu.table the matrix of samples x OTU read counts, and the dataframe taxonomy the taxonomic placement of those OTUs.

·        The script E1_compute_model_based_ordinations.R precomputes the gllvm-ordinations needed both for the colonization success model as well as the community divergence model. The precomputed ordinations are saved into a file.

·        The script E2_model_colonization_success.R defines the colonization success model, fits the model, and computes model fit based on cross-validation. The results are saved into a file.

·        The script E3_show_colonization_model_results.R loads the results saved by the previous script, and outputs the results reported in the manuscript.

·        The script E4_model_community_divergence defines the community divergence model and fits the model. The results are saved into a file.

·        The script E5_show_community_divergence_model_results.R loads the results saved by the previous scripts, and outputs the results reported in the manuscript, including Table 1 and Figure 2.
DOI: 10.5281/zenodo.14505303
title: Crystal structure and absence of magnetic order in single-crystalline RuO2

description: RuO2 was considered for a long time to be a paramagnetic metal withan ideal rutile-type structure down to low temperatures, but recent studies onsingle-crystals claimed evidence for antiferromagnetic order and some symmetrybreaking in the crystal structure. We have grown single-crystals of RuO2 byvapor transport using either O2 or TeCl4 as transport medium. These crystalsexhibit metallic behavior following a T2 low-temperature relation and a smallparamagnetic susceptibility that can be attributed to Pauli paramagnetism.Neither the conductance nor the susceptibility measurements yield any evidencefor a magnetic or a structural transition between 300K and ∼4 K. Comprehensivesingle-crystal diffraction studies with neutron and X-ray radiation reveal the rutilestructure to persist until 2K in our crystals, and show nearly perfect stoichiometry.Previous observations of symmetry forbidden reflections can be attributed tomultiple diffraction. Polarized single-crystal neutron diffraction experiments at1.6K exclude the proposed antiferromagnetic structures with ordered momentslarger than 0.01 Bohr magnetons.
DOI: 10.5281/zenodo.14755401
title: Soil nitrogen trace as fluxes for the US

description: Soil nitrgen fluxes (datasets using in Beerling et al. 2025, nature)
DOI: 10.5281/zenodo.14755423
title: US EW modelling outputs (Beerling et al. 2025, nature)
DOI: 10.5281/zenodo.3460695
title: SH component synthetic seismograms (SE_Supplementary_data)

description: Includes synthetic data files generated with pseudospectral method. See README for file format details.
DOI: 10.5281/zenodo.3817060
title: GRIST-QUVR-Mesh

description: Quasi-uniform (QU) and variable-resolution (VR) mesh files for supporting reviews and documents.
DOI: 10.5281/zenodo.3978269
title: The Regional Ice Ocean Prediction System v2

description: Code, data and scripts for GMD reviewers
DOI: 10.5281/zenodo.4095613
title: MITgcm model setup and output for "Improved representation of river runoff in ECCO simulations: implementation, evaluation, and impacts to coastal plume regions"

description: Seven simulations<br> three are conventional ECCO runs with climatology river runoff<br> LLC90-Fekete (aka ECCO-V4R4)<br> LLC270-Fekete (aka ECCO-LLC270)<br> CS510-Stammer (aka ECCO2)<br> four are same as above, except for JRA55-DO daily river runoff<br> LLC90-JRA55DO<br> LLC270-JRA55DO<br> LLC540-JRA55DO<br> CS510-JRA55DO <br> PART 1 MODEL SET-UP ============<br> LLC90-Fekete<br> ============<br> https://ecco.jpl.nasa.gov/drive/files/Version4/Release4/doc/v4r4_reproduction_howto.pdf ==============<br> LLC90-JRA55DO<br> ==============<br> similar to LLC90-Fekete except for JRA55DO runoff<br> #define CHECK_SALINITY_FOR_NEGATIVE_VALUES @CPP_OPTIONS.h<br> river runoff forcing from "LLC90-JRA55DO.tar", pickup from "LLC90-JRA55DO-PICKUP.tar" (each "JRA55DO.tar" contains 2015-2017 daily river runoff and "data.exf" for specification of JRA55DO river runoff; each "PICKUP.tar" contains pickup files for starting from 2015/01/01 and "data" for specification of initial conditions and model parameters) =============<br> LLC270-Fekete<br> =============<br> https://github.com/MITgcm-contrib/ecco_darwin/blob/master/v04/llc270_JAMES_paper/readme/readme_physics.txt ==============<br> LLC270-JRA55DO<br> ==============<br> https://github.com/MITgcm-contrib/ecco_darwin/blob/master/v05/llc270_jra55do/readme.txt<br> river runoff temperature NOT used here:<br> #undef ALLOW_RUNOFTEMP @EXF_OPTIONS.h<br> delete "runoftempfile" @data.exf<br> river runoff forcing from "LLC270-JRA55DO.tar", pickup from "LLC270-JRA55DO-PICKUP.tar" ==============<br> LLC540-JRA55DO<br> ==============<br> https://github.com/MITgcm-contrib/llc_hires/blob/master/llc_540/readme<br> https://github.com/MITgcm-contrib/llc_hires/blob/master/llc_540/readme#L16<br> river runoff forcing from "LLC540-JRA55DO.tar", pickup from "LLC540-JRA55DO-PICKUP.tar" =============<br> CS510-Stammer<br> =============<br> http://wwwcvs.mitgcm.org/viewvc/MITgcm/MITgcm_contrib/high_res_cube/cube92/README.cs510?revision=1.11&view=co =============<br> CS510-JRA55DO<br> =============<br> similar to CS510-Stammer except for JRA55DO runoff<br> #define CHECK_SALINITY_FOR_NEGATIVE_VALUES @CPP_OPTIONS.h<br> #define USE_NO_INTERP_RUNOFF @EXF_OPTIONS.h<br> river runoff forcing from "CS510-JRA55DO.tar", pickup from "CS510-JRA55DO-PICKUP.tar" <br> PART 2 MODEL OUTPUT<br> LLC###_${river}_SSS.mat<br> where ### for 90, 270, or 540<br> and ${river} for eight major rivers in the world.<br> each "mat" file contains the daily mean SSS over 2015-2017 near the corresponding river.<br>
DOI: 10.5285/853dd176-bc7a-48d4-a6be-33bcc0f17eeb
title: Concentration, size distribution and chemical composition of snow particles, sea salt aerosol and snow on sea ice in the Weddell Sea (Antarctica) during austral winter/spring 2013

description: Two consecutive cruises in the Weddell Sea, Antarctica, in winter/spring 2013 provided the first direct observations of sea salt aerosol (SSA) production from blowing snow above sea ice, thereby validating a model hypothesis to account for winter time SSA maxima in polar regions not explained otherwise. Concentration, size distribution and chemical composition of airborne snow particles, sea salt aerosol and snow on sea ice where measured on board RV Polarstern as well as on the sea ice during ice stations. Funding was provided by NERC projects NE/J023051/1 and NE/J020303/1.
description: Two consecutive Antarctic expeditions were carried out in the Weddell Sea aboard the German icebreaker RV Polarstern in 2013, the Antarctic Winter Ecosystem ClimateStudy(AWECS), ANT-XXIX/6 between 8 June and 12 August, and the spring expedition ANT-XXIX/7 between 14 August and 16 October. Methods are described in detail in Frey et al., 2019.
description: Detection limits and data quality are described in detail in Frey et al., 2019.
DOI: 10.5676/dwd_gpcc/fd_m_v2018_025
title: GPCC Full Data Monthly Version 2018.0 at 0.25°: Monthly Land-Surface Precipitation from Rain-Gauges built on GTS-based and Historic Data
title: Gridded Monthly Totals

description: This is the centennial GPCC Full Data Monthly Product of monthly global land-surface precipitation based on ~ 80,000 stations world-wide that feature record durations of 10 years or longer.
			The data coverage per month varies from ~10,000 to more than 50,000 stations.
			This product contains the monthly totals on a regular grid with a spatial resolution of 0.25° 0.5° x 0.5° latitude by longitude.
			Precipitation anomalies at the stations are interpolated and then superimposed on the GPCC Climatology V2018 in the corresponding resolution (DOI: 10.5676/DWD_GPCC/CLIM_M_V2018_025).
			The temporal coverage of the dataset ranges from January 1891 until December 2016.
			The GPCC Full Data Monthly Product is the most accurate in situ precipitation reanalysis data set of GPCC.
			Moreover it supports regional climate monitoring, model validation, climate variability analysis and water resources assessment studies.
description: General user recommendations: Users are referred to following gridded Global Precipitation Climate Centre (GPCC) products: GPCC Climatology 1951-2000 (GPCC_CLIM) with high representativeness,
			for application as a reference, and for utilization of the anomaly interpolation method. GPCC Full Data Reanalysis (GPCC_FD) with high accuracy, for, e.g., verification of models,
			or for analysis of historic global precipitation, or for research concerning the global water cycle, e.g., trend and teleconnection analyses.
			GPCC Monitoring Product (GPCC_MP) with high availability and reasonable timeliness, for applications like calibration of satellite data, or early annual reporting.
			GPCC First Guess Product (GPCC_FG) with high timeliness, to be applied for, e.g., drought monitoring.
DOI: 10.6084/m9.figshare.27102553
title: Comorbidity Networks From Population-Wide Health Data: Aggregated Data of 8.9M Hospital Patients (1997-2014)

description: Comorbidity networks have become a valuable tool to support data-driven biomedical research.Yet, studies often are severely hindered by the availability of the necessary comprehensive data, often due to the sensitivity of health care information.This study presents a population-wide comorbidity network dataset derived from 45 million hospital stays of 8.9 million patients over 17 years in Austria.We present co-occurrence networks of hospital diagnoses, stratified by age, sex, and observation period in a total of $96$ different subgroups.For each of these groups we report a range of association measures (e.g., count data, and odds ratios) for all pairs of diagnoses.The dataset provides the possibility to researchers to create their own, tailor-made comorbidity networks from real patient data that can be used as a starting point in quantitative and machine learning methods. This data platform is intended to lead to deeper insights into a wide range of epidemiological, public health, and biomedical research questions.
DOI: 10.6084/m9.figshare.28324367
title: Supplementary Material for: A challenging case of recurrent cholangitis caused by isolated bile duct metastasis of colorectal adenocarcinoma – rescue therapy through EUS-guided hepaticoesophagostomy.

description: A 64-year-old male was admitted with fever, abdominal pain and jaundice. Medical history was relevant for colorectal adenocarcinoma eleven years before and right hepatectomy due to liver metastasis. MRCP revealed left hepatic duct stenosis without liver nodules. ERCP was performed for biliary drainage with plastic stents. After inconclusive brush cytology, cholangioscopy (Spyglass™DS2) was performed showing villous mucosa surrounded by irregular vessels suggestive of tumor neovascularization. Spybite™ biopsies confirmed biliary metastasis of colorectal origin.
The patient started palliative chemotherapy being readmitted six months later with acute cholangitis. Diffuse infiltrating intrabiliary lesion with 120mm was detected in control MRCP. Given its intraductal extension and gastric compression by the hypertrophied liver leading to duodenoscope mispositioning, transpapilar stents could not be deployed. Multiorgan dysfunction developed despite broad-spectrum antibiotics and EUS-guided biliary drainage was proposed. Although EUS access was limited by gastric bulging, puncture of a dilated intrahepatic duct was accomplished with a 19G needle. PCSEMS (GIOBOR™8x100mm) placement was only possible above the gastroesophageal junction with the proximal flare being incidentally deployed in a 3cm intraparietal esophageal tract. The misplaced stent was immediately recanalized and a stent-in-stent FCSEMS (Wallflex™80x10mm) allowed the hepaticoesophagostomy creation. Since the stent opening was orally oriented in esophageal lumen, parenteral nutrition was started to avoid contamination. Sepsis recovering and liver tests normalization were observed. 
Before hospital discharge stent reposition was planned to resume oral feeding. After placement of a third stent-in-stent NCSEMS (Wallflex™120x10mm) in the hepaticoesophagostomy to prevent migration, the proximal flare was oriented to the stomach gently pushing with the endoscope aiding by an inflated biliary balloon. The patient resumed chemotherapy but died 8 months after due to disease progression. 
Isolated bile duct metastasis is an uncommon complication of colorectal cancer. EUS-guided hepaticoesophagostomy is feasible when puncture through the esophagus was inevitable, especially in patients with liver hypertrophy.
DOI: 10.7289/v5fn144h
title: NOAA Global Surface Temperature Dataset, Version 4.0

description: The NOAA Global Surface Temperature Dataset (NOAAGlobalTemp) is derived from two independent analyses: the Extended Reconstructed Sea Surface Temperature (ERSST) analysis and the land surface temperature (LST) analysis using the Global Historical Climatology Network (GHCN) temperature database. The data is merged into a monthly global surface temperature dataset dating back from 1880 to the present, updated monthly, in gridded (5 degree x 5 degree) and time series formats. This data set is used in climate monitoring assessments of near-surface temperatures on a global scale. The changes from version 3.5.4 to version 4.0.0 include an update to the primary input dataset (ERSST) now at version 4.0.0 and GHCN-Monthly now at version 3.3.0. This dataset is formerly known as Merged Land-Ocean Surface Temperature (MLOST).
DOI: 10.5281/zenodo.14740675
title: Data for publication: TRAPPIST-1 d Exo-Venus, Exo-Earth or Exo-Dead?

description: The files in this zip archive are data, scripts (javascript and MatLab) and associated output files in various formats that were used to generate the tables and plots in the paper: Way, M.J. (2025) ApJL "Trappist 1d: Exo-Venus, Exo-Earth or Exo-Dead?"

The DATA directory contains all of the ROCKE-3D NetCDF files that were parsed by the scripts in the top level directory.

The ACC, RSF, SOURCE and RUNDECK directories are explained in the top level README.txt file.

The files ending in pcl are javascript files that work with Panoply (https://www.giss.nasa.gov/tools/panoply/). You will first need to install Panoply, and a suitable java runtime library.

You will then need to unzip the file PanoplyCL-beta.zip and reference PanoplyCL.jar to run the pcl scripts as shown in the first few lines of each script. Of course the paths will have to change, e.g.To run 01_swcrf_toa_in_01_ANN34000-34999.aijTrappist1d_1bar_N2_C400_Arid.pcl you would run it in this manner:java -jar PanoplyCL.jar 01_swcrf_toa_in_01_ANN34000-34999.aijTrappist1d_1bar_N2_C400_Arid.pcl

While making sure that your path to the source NetCDF file in the pcl script is correct. In this case it is currently:var ncfile1 = panoply.openDataset ( "file:/Users/mway/GoogleD/papers/2024-Trappist1d/FIGURES/DATA/01_ANN34000-34999.aijTrappist1d_1bar_N2_C400_Arid.nc" );

So one would need to change this path: /Users/mway/GoogleD/papers/2024-Trappist1d/

In two cases we used PowerPoint to combine multiple figures and to make legible axes, legends, etc.That would be both Figures 2 and 3.

Fig2.pptx was built from the outputs from the pcl scripts discussed above along with the files ending in the name *colorbar.png

Fig3.pptx was built from two MatLab (Fig3A.m and Fig3B.m) generated files (Fig3A.jpg and Fig3B.jpg).

Table1.m is a MatLab script that roughly generates Table 1 from the paper. Some modest modificationswere made by hand in the LaTeX source when entered into the manuscript source LaTeX file.
DOI: 10.60686/t-fsd3433
title: FSD3433 PROMEQ: Health and Well-being of the Long-term Unemployed 2016-2018
DOI: 10.6096/baobab-dacciwa.1656
title: Radiosonde - All sites

description: 1) Radiosonde data from the DACCIWA stations Abidjan, Accra, Cotonou, Lamto, Parakou. External data from Abuja, Douala, Enugu, Kano, Lagos are also provided<br />
2) Please refer to the README file in the directory "Radiosonde_Data" for more information about the data structure and data format.<br />
3) In general: Vertical profile of pressure, temperature, dew point temperature, relative humidity,  wind speed, wind direction. The parameters described in the section below refer to the high resolution soundings (in ftr format) from the campaign.<br />
4) Data is not confined to the DACCIWA period. Soundings from previous years are also included<br />
5) Data for Kumasi will be delivered by ULEEDS. Soundings from Save have already been provided by UPS.<br />
<br />
IMPORTANT NOTE: Some humidity measurements with GRAW-type radiosondes (Accra and Lamto) have shown a dry bias while penetrating clouds, i.e. maximum relative humidity is typically 95% instead of 100%.<br />
<br />
Observing strategy: <br />
In general, six-hourly launches at synoptic times during the DACCIWA period. At times, launches at 0900 UTC in Accra and 0300, 0900 and 2100 UTC in Lamto were executed.
DOI: 10.15468/dl.5gjjf4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cinchona pubescens Vahl)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017667-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/2f3h6nfvww
title: POLDIS A Monte Carlo for POLarized (semi-inclusive) Deep Inelastic Scattering

description: Abstract POLDIS is a Monte Carlo program for polarized (semi-inclusive) deep inelastic scattering (DIS). Unpolarized DIS events are generated with the existing lepto-production event generators LEPTO for DIS and AROMA for Heavy Flavor production. The relevant spin asymmetries are computed at partonic level to first order in α_sfor each generated event, and are then convoluted with the corresponding parton polarization. This procedure provides a polarization weight for each event. The average of thes... Title of program: POLDIS, version 2.0 Catalogue Id: ADGI_v1_0 Nature of problem Deep inelastic scattering (DIS) of polarized charged leptons off polarized nuclear targets allows to access the spin dependent nucleon structure. When interpreted in the framework of the quark-parton model the experimental results show that the quark spins account only for a rather small fraction of the nucleon spin, thus implying an appreciable contribution either of gluons or possibly of orbital angular momentum [1]. The study of semi-inclusive DIS allows, in addition, to distinguish the role ... Versions of this program held in the CPC repository in Mendeley Data ADGI_v1_0; POLDIS, version 2.0; 10.1016/S0010-4655(97)00063-5 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/xswfstsv72
title: Data for: Enchytraeids simultaneously stimulate rice straw degradation and mitigate CO2 release in a paddy soil
DOI: 10.17632/y4wxv5zk3f
title: Data for: Challenging the small vertebrate taphonomy: investigations from modern snowy owl (Bubo scandiacus) accumulations

description: raw data of modern snowy owls (Bubo scandiacus) accumulations
DOI: 10.17632/f5j5ctrfjm
title: Data for: δD and δ18O variations of the magmatic system beneath Deception Island volcano (Antarctica): implications for magma ascent and eruption forecasting

description: D/H and d18O database used in this research (same as Table 1 in the main manuscript) with georef links to the location of our own samples, as well as the ones from the Polar Repository Rock.
DOI: 10.17632/hx5xfv9tpc
title: Eruptions and Related Clinical Course Among 296 Hospitalized Adults with Confirmed COVID-19

description: Supplemental tables and figures for Eruptions and Related Clinical Course Among 296 Hospitalized Adults with Confirmed COVID-19.
DOI: 10.17632/82zsf2dbw5
title: File_S1

description: This document provides variables definitions on behalf of the study entitled "Hepatitis B vaccination uptake rate and predictors in healthcare professionals of Ethiopia"
DOI: 10.17632/fr6g4tgnfh
title: The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features

description: The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features
DOI: 10.17632/snrsztd8b6
title: LINF_100010800

description: GP63 - leishmanolysin; Leishmania infantum
DOI: 10.17632/6ssv35gfgp
title: FOI requests - Chile

description: Dataset for
DOI: 10.17632/fv8bvksrhb
title: Banking Reforms, Efficiency and Competition in Ghana from 2008-2019

description: This paper examines the effect of the ongoing banking reforms on bank efficiency and bank competition within the efficient structure (ES) and the structure-conduct-performance (SCP) framework for the Ghanaian banking industry. Using an annual panel data of 21 Ghanaian banks from 2008-2019, we employed the nonparametric data envelope analysis (DEA) technique to estimate the level of bank pure-technical (PTE) and cost-efficiency (CE) while the Herfindahl-Hirschman Index (HHI) and the market share of lending (MSL) concentration ratios are employed as our proxies for the market power hypotheses. Further, the two-step system generalized method of moments is employed to estimate a panel model where the PTE, CE, HHI and MSL are regressed on bank-level factors while controlling for macroeconomic variables. Despite the remarkable improvements in bank efficiency in Ghana, the findings depict a worrying trend in bank competition resulting from the ongoing reforms. While increasing bank size and bank capital are found to have a positive relationship with bank efficiency and market power, a negative relationship between liquidity and bank efficiency and competition is reflected by the banks' inability to optimally utilize the excess liquidity flowing in from the other vulnerable financial sectors due to the ongoing banking crisis. We also document evidence on the high persistence of market power which suggest a declining bank competition in Ghana. Policy implications for the Ghanaian banking industry regulation are discussed.
DOI: 10.17632/cpsvhmd2cc
title: A Study of Tourists at Kashid Beach and Nagaon Beach

description: This is final data collected with designed and tested instrument. The questionnaire utilized different Likert scales for different constructs. This data is collected with convenience sampling technique with an intention to fulfill the needs of PhD Thesis at Rashtrasant Tukdoji Maharaj Nagpur University, Nagpur
DOI: 10.17632/xr8kpyzzrt
title: CFSPCR

description: data.xls is data for this stuty. Stata code in this study is provided upon request.