cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.stqjq2c84
title: Pan-European database for pathogenic microbial taxa in birds and bats

description: The spatially extensive multidimensional database of the prevalence of
 pathogenic microbial taxa for humans and wildlife in birds and bats was
 compiled by systematically reviewing publications for 121 pathogenic taxa.
 It covered pathogenic taxa mostly at the genus level (species level for
 most of the viruses), including sampling from ~450,000 host individuals of
 376 bird species and 39 bat species.  Data S1. Taxonomic details
 of the covered bird and bat species and pathogen prevalence of the most
 studied pathogenic microbial taxa in these host species.  Data
 S2. Taxonomic details and sample sizes of the covered pathogenic microbial
 taxa. Data S3. Pan-European database for pathogenic microbial taxa from
 systematic review. Data S4. Input data for modelling. The filtered dataset
 follows the protocol illustrated in “Database quality control” of Methods
 in the corresponding article. Because the database includes endangered
 species that were listed by the IUCN as anything from Threatened or more
 severe, the geographical coordinates in the datasets were required by the
 platform to be masked as numbers with a scale of 1. The finer resolution
 coordinates (with a scale of 4) can be requested by contacting the
 corresponding author: Yanjie Xu (yanjie.xu5@gmail.com or
 yanjie.xu@helsinki.fi). The comprehensive methods about the data
 collection and database quality control are illustrated in the
 corresponding article. Xu, Y., Poosakkannu, A., Suominen, K.M., Laine
 V.N., Lilley T.M., Pulliainen A.T. & Lehikoinen, A. (2023).
 Continental-scale climatic gradients of pathogenic microbial taxa in birds
 and bats. Ecography. https://doi.org/10.1111/ecog.06783
description: The comprehensive methods
 about the data collection and database quality control was illustrated in
 the corresponding article: Xu, Y., Poosakkannu, A., Suominen, K.M., Laine
 V.N., Lilley T.M., Pulliainen A.T. & Lehikoinen, A. (2023).
 Continental-scale climatic gradients of pathogenic microbial taxa in birds
 and bats. Ecography.
 https://doi.org/10.1111/ecog.06783
DOI: 10.5061/dryad.fbg79cp1d
title: A five-sensor IMU-based Parkinson's disease patient and control dataset including three activities of daily living

description: Parkinson’s disease is an often-debilitating progressive neurological
 condition leading to loss of motor control. This dataset contains
 kinematic sensor data from two groups: one containing 15 patients with
 Parkinson’s disease, and a control group of 19 participants without any
 known neurological condition. Participant ages ranged from 40–85, 21 were
 male, and 13 were female. The participants wore five 9-axis Inertial
 Measurement Units (IMUs) – one on each upper arm, each lower arm, and on
 their head. They were asked to perform a calibration pose, followed by
 three activities: making toast, putting on a cardigan, and unlocking and
 opening a door, with each activity repeated three times. The IMUs recorded
 time-series acceleration and orientation data from the moment where the
 participant was instructed to begin the activity (inception of the idea to
 act), through to the activity’s completion. This dataset is planned for
 use in intent-sensing studies for assistive device control but is also
 applicable for activity recognition.
description: Data in this study came from a set of
 34 volunteers, 15 of whom had Parkinson’s disease and 19 of whom did not.
 21 of the participants were male and 13 female, with ages ranging from 40
 to 85. All volunteers signed an informed consent form and ethical approval
 for the study was obtained from the NRES Committee South West (REC
 reference 13/SW/0287). The data collection was performed by research
 nurses, who supervised the participants throughout the process.
 Initially, the participants stood in
 a calibration pose, with their arms by their sides, with this data
 recorded for standardization. The participants then performed three
 activities of daily living (ADLs) – unlocking and opening a door,
 buttoning and unbuttoning a cardigan, and making toast. Each activity was
 repeated three times, without a break. Data recording began at the moment
 the participant was instructed to begin the task. The participants each wore five Xsens IMU
 three-axis nine-channel IMUs (MTx, Xsens Technologies B. V., Enschede,
 Netherlands). These were secured to the participants' lower and upper
 arms (both left and right), and to their head. See the supplementary
 figure for a photograph of this. During the activities, the participant was
 engaged in conversation by the supervising research nurses but were asked
 not to talk about the activity they were performing. This engagement was
 aimed at making the motor behaviour more natural and to better represent
 activities of daily living in which cognitive loading is increased due to
 the application of multitasking. Each IMU provided magnetometer, gyroscope,
 and accelerometer data, along with a 3x3 rotation matrix provided by the
 XSens software.
description: The data is provided as a separate folder for each participant,
 with each trial saved as a separate .xls file, which can be opened in
 Microsoft Excel or similar, and imported into software such as
 Matlab.
DOI: 10.5061/dryad.44j0zpckp
title: Data for: Expression of trematode-induced zombie-ant behavior is strongly associated with temperature

description: Parasite-induced modification of host behavior increasing transmission to
 a next host is a common phenomenon. However, field-based studies are rare
 and the role of environmental factors in eliciting host behavioral
 modification is often not considered. We examined the effects of
 temperature, relative humidity (RH), time of day, date, and an
 irradiation-proxy on behavioral modification of the ant Formica
 polyctena (Förster, 1850) by the brain-encysting lancet liver
 fluke Dicrocoelium dendriticum (Rudolphi, 1819). This fluke
 induces ants to climb, and bite to vegetation by the mandibles in a state
 of temporary tetany. A total of 1,264 individual ants expressing the
 modified behavior were observed over 13 non-consecutive days during one
 year in the Bidstrup Forests, Denmark. A sub-set of those ants (N=172) was
 individually marked to track attachment and release of infected ants in
 relation to variation in temperature.
DOI: 10.5061/dryad.d7wm37q6b
title: Data for: Assessment of genetic diversity and protein content of Scandinavian peas (Pisum sativum)

description: We produced homogeneous lines of 227 pea accessions from the Nordic
 Genetic Resource Center by single seed descent. The genetic diversity
 among these, mostly Scandinavian accessions, was investigated using three
 microsatellite markers, A9, AC58 and AA5. The microsatellites were highly
 informative and separated 153 of 194 accessions on a Neighbor Joining
 topology. The high polymorphism information content (PIC) values between
 0.87 and 0.91 indicated that the gene bank material contains a large
 number of pea accessions with different breeding. The peas were grown in
 the field for two years and seed protein content showed variation between
 9.3% and 34.1% over years and accessions. Mean thousand seed weight was
 152.05 g. More than 10 accessions had protein content above 28% showing
 that the collection has potential as a breeding nursery for high-protein
 pea.
description: # Data for: Assessment of genetic diversity and protein content of
 Scandinavian peas (*Pisum* *sativum*) *** Authors: Louise Winther, Søren
 Kjærsgaard Rasmussen, Gert Poulsen and Conny Bruun Asmussen Lange ##
 Description of the Data and file structure This dataset contains two Excel
 sheets providing information about SSR-results of the pea accessions as
 well as protein data. #### File: Binary microsatellite.xlsx A provides
 accession names. The name is split in 3; the first part is accession
 number, the second is the name in Nordgen and the third is the name of
 cultivar. Row 1 provides length of fragments, with first letter
 corresponding to color of microsatellite. Results in cells are binary.
 0=No fragment, 1=fragment. The results are color-coded according to color
 of microsatellite. Darker rows indicate no fragment present of the
 accession for the given microsatellite (Blue, Green or Yellow). <br>
 <br> #### File: Overview of Data.xlsx A: Accession name/number B:
 Nordgen name C: Cultivar name. Empty cells represent that no cultivar name
 is available. D-F: Microsatellite results. x indicates a microsatellite
 result, Empty cells represent no result from given microsatellite. G:
 Thousand seed Weight in gram, weighed in 2017. Empty cells indicate that
 TSW is not applicable. H-J: Protein content calculated for 2017, 2018 and
 2019. Empty cells indicate that the protein content has not been
 calculated for the given accession the given year. Yellow highlights mark
 accessions which has no microsatellite result (No x in Column D-F), and is
 thus not included in the genetic analysis, only in protein content. ##
 Sharing/access Information Article available:
 [https://doi.org/10.3390/agronomy13092307](https://doi.org/10.3390/agronomy13092307) Data is original, from no other source.
DOI: 10.5061/dryad.zpc866tdn
title: Data from: Leaf metabolic traits reveal hidden dimensions of plant form and function

description: In this study, we interpreted leaf metabolome variation among 457 tropical
 and 339 temperate plant species to understand how the metabolome
 contributes to macroecological variation in plant functioning. Metabolome
 data were generated using liquid chromatography mass spectrometry,
 annotated with compound names (where possible), and cross-referenced
 against chemoinformatics databases to derive metabolite chemical
 properties. We then compared variation in leaf metabolite chemical
 properties among species with variation in classical plant functional
 traits.
DOI: 10.5061/dryad.05qfttf8c
title: The effects of N-addition on litter mixture effects depend on decomposition time: a case from mixed-litter decomposition in the Gurbantunggut Desert

description: Changes in nitrogen (N) deposition and litter mixtures have been shown to
 influence ecosystem processes such as litter decomposition. However, the
 interactive effects of litter mixing and N-deposition on decomposition
 process in desert regions remain poorly identified. We assessed the
 simultaneous effects of both N addition and litter mixture on mass loss in
 a litterbag decomposition experiment using six native plants in
 single-species samples with diverse quality and 14 species-combinations in
 the Gurbantunggut Desert under two N addition treatments (control and N
 addition). The N addition had no significant effect on decomposition rate
 of single-species litter (except Haloxylon ammodendron), whereas litter
 mass loss and decomposition rate differed significantly among species,
 with variations positively correlated with initial phosphorus
 concentration and negatively correlated with initial lignin concentration.
 After 18 months, the average mass loss across litter mixtures did not
 overall differ from those predicted from single-species either in control
 or N addition treatments, that is, mixing of different species had no
 non-additive effects on decomposition. The N addition, however, did modify
 the direction of mixture effects, and interacted with incubation time.
 Added N transformed synergistic effects of litter mixtures to antagonistic
 effects on mass loss after 1 month of decomposition, while transforming
 neutral effects of litter mixture to synergistic effects after 6 months of
 decomposition. Our results demonstrated that initial chemical properties
 played an important role in litter decomposition, while no effects of
 litter mixture on decomposition process in this desert region. The N
 addition altered the litter mixture effects on mass loss with incubation
 time, implying that increased N deposition in the future may have profound
 effects on carbon turnover to a greater extent than previously thought in
 desert ecosystems.
DOI: 10.82294/dvnxoiiyv
title: Replication Data for: Citas testimoniales: Identificación de currículos existentes Territorio: Todos. Sector: Todos. Año: 2023

description: Esta agrupación está diseñada para identificar según el valor de sus palabras, si los educadores artísticos identifican, transforman, proponen una práctica basada en la reproducción curricular o, por el contrario, valoran si sus prácticas giran en torno a proponer currículos por interpretación, según lo propuesto por el académico William Pinar. En dicha dicotomía, los educadores discutieron sobre lo que se espera que el estudiante realice y lo que consideran hacer ellos mismos en su práctica cotidiana.
DOI: 10.5061/dryad.kd51c5bc4
title: Tropical forests are mainly unstratified especially in Amazonia and regions with lower fertility or higher temperatures

description: The stratified nature of tropical forest structure had been noted by early
 explorers, but until recent use of satellite-based LiDAR (GEDI, or Global
 Ecosystems Dynamics Investigation LiDAR), it was not possible to quantify
 stratification across all tropical forests. Understanding stratification
 is important because by some estimates, a majority of the world’s species
 inhabit tropical forest canopies. Stratification can modify vertical
 microenvironment, and thus can affect a species’ susceptibility to
 anthropogenic climate change. Here we find that, based on analyzing each
 GEDI 25m diameter footprint in tropical forests (after screening for human
 impact), most footprints (60-90%) do not have multiple layers of
 vegetation. The most common forest structure has a minimum plant area
 index (PAI) at ~40m followed by an increase in PAI until ~15m followed by
 a decline in PAI to the ground layer (described hereafter as a one peak
 footprint). There are large geographic patterns to forest structure within
 the Amazon basin (ranging between 60–90% one peak) and between the Amazon
 (79 ± 9 % sd) and SE Asia or Africa (72 ± 14 % v 73 ±11 %). The number of
 canopy layers is significantly correlated with tree height (r2=0.12) and
 forest biomass (r2=0.14). Environmental variables such as maximum
 temperature (Tmax) (r2=0.05), vapor pressure deficit (VPD) (r2=0.03) and
 soil fertility proxies (e.g. total cation exchange capacity - r2=0.01)
 were also statistically significant but less strongly correlated given the
 complex and heterogeneous local structural to regional climatic
 interactions. Certain boundaries, like the Pebas Formation and Ecoregions,
 clearly delineate continental scale structural changes. More broadly,
 deviation from more ideal conditions (e.g. lower fertility or higher
 temperatures) leads to shorter, less stratified forests with lower
 biomass.
DOI: 10.5061/dryad.fbg79cp1f
title: Coursing the mottled mosaic: generalist predators track pulses in availability of neonatal ungulates

description: The density and distribution of resources shape animal movement and
 behavior and have direct implications for population dynamics. Resource
 availability often is “pulsed” in space and time, and individuals should
 cue in on resource pulses when the energetic gain of doing so exceeds that
 of stable resources. Birth pulses of prey represent a profitable but
 ephemeral resource and should thereby result in shifting functional
 responses by predators. We evaluated movements and resource selection of
 coyotes (Canis latrans) across a gradient of reproductive stages ranging
 from late gestation to peak lactation of female mule deer (Odocoileus
 hemionus) in southwest Wyoming, USA to test whether coyotes exhibited
 shifts in selection and movement behavior relative to the availability and
 vulnerability of neonatal mule deer. We expected coyotes to track pulses
 in availability of neonatal mule deer, and such behavior would be
 represented by shifts in resource selection and search behavior of coyotes
 that would be strongest during peak parturition of mule deer. Coyotes
 selected areas of high relative probability of use by female mule deer and
 did so most strongly during peak parturition. Further, searching behavior
 of coyotes intensified during pulses of availability of deer neonates. Our
 findings support the notion that coyotes exploit pulses of neonatal deer,
 presumably as an attempt to capitalize on a vulnerable, energy-rich
 resource. Our work quantifies the behavioral mechanisms by which coyotes
 consume ungulate neonates and provides one of the first examples of a
 mammalian predator-prey system centered on a pulsed resource.
DOI: 10.5061/dryad.0rxwdbs5k
title: Data for: The effects of embryonic incubation temperature on subsequent growth and thermal tolerance in white sturgeon throughout onset of exogenous feeding to early juveniles

description: An organism’s phenotypic characteristics can be altered by environmental
 variation experienced during embryonic development, potentially leading to
 changes that persist into adulthood. Increasing global temperatures are a
 current concern that may be particularly acute for species already
 threatened or endangered, such as the white sturgeon, Acipenser
 transmontanus. Given the limited information on the effects of embryonic
 temperatures on subsequent physiological parameters such as thermal
 tolerance and growth in this species, the effects of global climate change
 on the future of white sturgeon populations are uncertain. To investigate
 carryover effects resulting from early rearing temperatures, white
 sturgeon embryos were incubated at different environmental temperatures
 (Te­) of 12, 15, and 18 °C until hatch, after which fish were reared at a
 common 15 °C for 80 days post-hatch (dph). Individuals from each
 temperature treatment were tested for thermal tolerance using the critical
 thermal maximum method (CTmax) at regular intervals from 13 to 80 dph,
 which bridged the time from the start of exogenous feeding through the
 transition into early juveniles. In addition, body length measures were
 taken to determine the effects of embryonic Te­ on growth through
 these life stages. We found that embryonic Te­ affected both
 thermal tolerance and growth; fish that developed at 18 °C had the lowest
 thermal tolerance, while those that developed at 12 °C grew largest over
 the observation period. This research represents a window into a critical
 period of development during which organisms are particularly vulnerable
 to climatic variation. The results can inform environmental managers on
 the best strategies to help conserve current white sturgeon populations
 across their range.
description: The data is an MS Excel file.
DOI: 10.5061/dryad.wm37pvmt6
title: The risk of brood parasitism does not affect levels of extra-pair paternity in a cuckoo host

description: In socially monogamous bird species, extra-pair paternity is common, but
 its level varies considerably within and among species. For hosts of brood
 parasites, the risk of brood parasitism may influence the costs of
 engaging in extra-pair copulations (e.g., leaving the nest undefended) and
 the benefits of having extra-pair young (e.g., spreading the risk of nest
 predation). However, whether brood parasitism risk affects extra-pair
 behavior in host species has rarely been tested. We investigated whether
 variation in the risk of brood parasitism affected levels of extra-pair
 paternity in Daurian redstarts, a socially monogamous passerine. As a
 common host of the common cuckoo, the redstart is unique in that its first
 clutch of the year takes place before the arrival of cuckoos. As a
 consequence, redstarts experience large seasonal variation in cuckoo
 parasitism risk, with no parasitism in the first egg-laying period and a
 high risk in the second period. We genotyped 995 nestlings (and unhatched
 eggs) from 181 broods and found moderate levels of extra-pair paternity,
 with 34.8% of broods containing at least one extra-pair young and 11.7% of
 all offspring being sired by an extra-pair male. However, levels of
 extra-pair paternity did not differ between the first and the second
 egg-laying period. Also, experimentally simulating parasitism risk during
 the first egg-laying period by broadcasting cuckoo vocalizations and
 presenting taxidermic models of cuckoos did not affect levels of
 extra-pair paternity in redstarts. Our results, therefore, suggest that
 the risk of brood parasitism does not affect host extra-pair paternity.
description: README The key columns for dataset year = study year nest_id = nest
 identity clutch = egg-laying period (first/second) plot = subplot of the
 study site treatment = manipulation of perceived brood parasitism risk
 (cuckoo/control); 'NA' indicates nest from 2018, when we did not
 conduct the manipulation clutch_size = clutch size; 'NA' means
 the clutch size is unknown typed_young = number of offspring genotyped
 epy_yn = whether the brood includes extra-pair young or not epp_loss =
 number of extra-pair young in the brood prop_epy = proportion of
 extra-pair young in the brood
DOI: 10.6076/d1pw2v
title: Turbulent velocity profiles for dissipation rate of 1e-6 W/kg

description: Fundamental marine ecosystem dynamics such as mating, predation, and
 infection require individual plankton to move relative to one another.
 Ambient turbulence is often invoked as a mechanism to facilitate such
 interactions. The local intensity of turbulence is quantified as the
 dissipation rate of turbulent kinetic energy. While the dissipation rate
 is central to understanding large-scale fluxes of heat, salt, and
 nutrients in the ocean, we show that it can be a poor descriptor of the
 turbulent environment experienced by individual plankton. A dissipation
 rate is a single integrated quantity representing all the complex motions
 in a turbulent region; the instantaneous turbulent environment of plankton
 may bear little resemblance to that predicted by the dissipation rate or
 quantities derived from it. Most importantly, the statistics
 (probabilities) of the relative motions of plankton in turbulence cannot
 be recovered from the dissipation rate or its spectrum: the probabilities
 of the plankton experiencing any given turbulent shear are lost in the
 calculation. This presents a fundamental barrier to our understanding of
 the effects of ambient turbulence on planktonic ecosystem dynamics in the
 ocean. Rather than relying on dissipation rates, we show that quantifying
 the probability distributions of the microscale turbulent motions can
 provide much richer insights into the turbulent environment of individual
 plankton. Expanding such statistical analyses, and improving our
 understanding of the Lagrangian properties of ocean turbulence as
 experienced by plankton in the ocean will lead to significant increases in
 our ability to understand and quantify the effects of turbulence on
 plankton.
description: Data were acquired with the Modular
 Microstructure Profiler (MMP, MacKinnon and Gregg, 2003; Mickett et al.,
 2004) deployed during the FLEAT (FLow Encountering Abrupt Topography)
 experiment around Palau (Johnston et al., 2019; MacKinnon et al., 2019).
 The 440 vertical velocity profiles gave data from ~20 m to as deep as 500
 m, with ~1.7 mm spatial resolution; turbulent velocities were low-pass
 filtered to remove noise created by the instrument
 vibrations.
description: Data are in ASCII format, readable by most software.