cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.782261
title: Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.

description: TRAMS (Tool for Rapid Annotation of Microbial SNPs) is a program for functional annotation of genomic SNPs which is available to download as a single file executable for WINDOWS users with limited computational experience and as a Python script for Mac OS and Linux users. TRAMS needs only a tab delimited text file containing SNP locations, reference nucleotide and SNPs in different strains along with a reference genome sequence in standard GenBank or EMBL format. TRAMS annotates SNPs as synonymous, non-synonymous or nonsense. Non-synonymous SNPs in start and stop codons are separated as non-start and non-stop SNPs, respectively. SNPs in overlapping features are annotated separately for each feature and multiple nucleotide polymorphisms (MNPs) within a codon are combined prior to annotation. We have also developed a workflow for use in Galaxy to map short reads to a reference genome and extract and annotate the SNPs. TRAMS is a simple program for rapid and accurate annotation of SNPs that will be very useful for microbiologists in analysing genomic diversity in microbial populations. Availability: TRAMS is available here to download as Python script and single file executable for WINDOWS and also in the Galaxy tool shed (http://toolshed.g2.bx.psu.edu/view/rreumerman/snptools). <strong>Please cite</strong> Reumerman, R. A., Tucker, N. P., Herron, P. R., Hoskisson, P. A., & Sangal, V. (2013). Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes. Antonie van Leeuwenhoek, 104, 431-434. doi:10.1007/s10482-013-9953-x The full published manuscript is available http://link.springer.com/article/10.1007%2Fs10482-013-9953-x UPDATED 24th September 2013 see Changelog.txt ==[Version1.0.2]== 130923:Fixed issue where program crashed on absence of certain features in genbank file. ==[Version1.0.1]== 130919:Fixed issue where'Gene'and'Source' were not recognized as'gene'and'source'. 130919:Fixed issue where features' strands were mysteriously no longer recognized if on +1 strand.
DOI: 10.6084/m9.figshare.782261.v1
title: Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.

description: TRAMS (Tool for Rapid Annotation of Microbial SNPs) is a program for functional annotation of genomic SNPs which is available to download as a single file executable for WINDOWS users with limited computational experience and as a Python script for Mac OS and Linux users. TRAMS needs only a tab delimited text file containing SNP locations, reference nucleotide and SNPs in different strains along with a reference genome sequence in standard GenBank or EMBL format. TRAMS annotates SNPs as synonymous, non-synonymous or nonsense. Non-synonymous SNPs in start and stop codons are separated as non-start and non-stop SNPs, respectively. SNPs in overlapping features are annotated separately for each feature and multiple nucleotide polymorphisms (MNPs) within a codon are combined prior to annotation. We have also developed a workflow for use in Galaxy to map short reads to a reference genome and extract and annotate the SNPs. TRAMS is a simple program for rapid and accurate annotation of SNPs that will be very useful for microbiologists in analysing genomic diversity in microbial populations. Availability: TRAMS is available here to download as Python script and single file executable for WINDOWS and also in the Galaxy tool shed (http://toolshed.g2.bx.psu.edu/view/rreumerman/snptools). <strong>Please cite</strong> Reumerman, R. A., Tucker, N. P., Herron, P. R., Hoskisson, P. A., & Sangal, V. (2013). Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes. Antonie van Leeuwenhoek, 104, 431-434. doi:10.1007/s10482-013-9953-x The full published manuscript is available http://link.springer.com/article/10.1007%2Fs10482-013-9953-x
DOI: 10.6084/m9.figshare.782241
title: ACADEMIC REPORT: OBJECT-ORIENTED SOFTWARE DEVELOPMENT AND TESTING

description: <strong>Executive Summary</strong><strong></strong> The purpose of this report is to identify and describe the testing strategies, software tactics, testing techniques and metrics for Object Oriented (OO) software development context. The Object Oriented Programming (OOP) language refers to a programming methodology that is based on objects, instead of just functions and procedures. The OOP allows individual objects to organize and group themselves together into classes. The report explores the differences between the traditional development and the OO development context as well as the appropriate testing strategies, tactics, techniques and metrics for OO systems. The findings revealed that because of the complex structure of the OO development systems, therefore the traditional unit testing approach is ineffective when considering an OO system. Further, the three most used testing strategies are: the class testing strategy which starts immediately once the source code is being created; the two integration testing methods including the thread-based testing and the used-based testing; the cluster testing and the object state test model. Moreover, in the OO development, a variety of software development tactics and techniques can be used appropriately in different areas to help detect coding errors including: the black box, the use case modelling techniques, the object behaviour models and event flow diagrams. The white-box testing method can be applied to the operations defined for a class. Testers can also use the basis path, loop testing, or data flow techniques to check to ensure that every statement in an operation has been tested. Finally, many OO metrics have been proposed to assess the testability of an OO system.
DOI: 10.6084/m9.figshare.782243
title: HCT ORGANISATION NEW INFORMATION SYSTEM TEST PLAN AND IPLEMENTATION – Black Box and White Box Testing

description: The purpose of this assignment is to develop a test plan and test the complete set up HCT Microsoft SQL database. There are two parts to this HCT System: (1) Microsoft SQL Database and (2) the HCT Website. The HCT Website has not been created yet which means that the HCT system is being partially tested. The testing involves developing a test plan and executing it on the given database system, reporting on the results of the tests, and recommending the changes needed to correct the faults found in the system. The testing strategies adopts the basic Black Box Testing (BBT) and White Box Testing (WBT) generic functional and behavioural, administrator accessibility, error spotting and matching of the HCT documents against SQL inputs and outputs.
DOI: 10.6084/m9.figshare.782243.v1
title: HCT ORGANISATION NEW INFORMATION SYSTEM TEST PLAN AND IPLEMENTATION – Black Box and White Box Testing

description: The purpose of this assignment is to develop a test plan and test the complete set up HCT Microsoft SQL database. There are two parts to this HCT System: (1) Microsoft SQL Database and (2) the HCT Website. The HCT Website has not been created yet which means that the HCT system is being partially tested. The testing involves developing a test plan and executing it on the given database system, reporting on the results of the tests, and recommending the changes needed to correct the faults found in the system. The testing strategies adopts the basic Black Box Testing (BBT) and White Box Testing (WBT) generic functional and behavioural, administrator accessibility, error spotting and matching of the HCT documents against SQL inputs and outputs.
DOI: 10.6084/m9.figshare.782244
title: Gaussian Job Archive for C9H9ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.782241.v1
title: ACADEMIC REPORT: OBJECT-ORIENTED SOFTWARE DEVELOPMENT AND TESTING

description: <strong>Executive Summary</strong><strong></strong> The purpose of this report is to identify and describe the testing strategies, software tactics, testing techniques and metrics for Object Oriented (OO) software development context. The Object Oriented Programming (OOP) language refers to a programming methodology that is based on objects, instead of just functions and procedures. The OOP allows individual objects to organize and group themselves together into classes. The report explores the differences between the traditional development and the OO development context as well as the appropriate testing strategies, tactics, techniques and metrics for OO systems. The findings revealed that because of the complex structure of the OO development systems, therefore the traditional unit testing approach is ineffective when considering an OO system. Further, the three most used testing strategies are: the class testing strategy which starts immediately once the source code is being created; the two integration testing methods including the thread-based testing and the used-based testing; the cluster testing and the object state test model. Moreover, in the OO development, a variety of software development tactics and techniques can be used appropriately in different areas to help detect coding errors including: the black box, the use case modelling techniques, the object behaviour models and event flow diagrams. The white-box testing method can be applied to the operations defined for a class. Testers can also use the basis path, loop testing, or data flow techniques to check to ensure that every statement in an operation has been tested. Finally, many OO metrics have been proposed to assess the testability of an OO system.
DOI: 10.6084/m9.figshare.782244.v1
title: Gaussian Job Archive for C9H9ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.782261.v2
title: Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.

description: TRAMS (Tool for Rapid Annotation of Microbial SNPs) is a program for functional annotation of genomic SNPs which is available to download as a single file executable for WINDOWS users with limited computational experience and as a Python script for Mac OS and Linux users. TRAMS needs only a tab delimited text file containing SNP locations, reference nucleotide and SNPs in different strains along with a reference genome sequence in standard GenBank or EMBL format. TRAMS annotates SNPs as synonymous, non-synonymous or nonsense. Non-synonymous SNPs in start and stop codons are separated as non-start and non-stop SNPs, respectively. SNPs in overlapping features are annotated separately for each feature and multiple nucleotide polymorphisms (MNPs) within a codon are combined prior to annotation. We have also developed a workflow for use in Galaxy to map short reads to a reference genome and extract and annotate the SNPs. TRAMS is a simple program for rapid and accurate annotation of SNPs that will be very useful for microbiologists in analysing genomic diversity in microbial populations. Availability: TRAMS is available here to download as Python script and single file executable for WINDOWS and also in the Galaxy tool shed (http://toolshed.g2.bx.psu.edu/view/rreumerman/snptools). <strong>Please cite</strong> Reumerman, R. A., Tucker, N. P., Herron, P. R., Hoskisson, P. A., & Sangal, V. (2013). Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes. Antonie van Leeuwenhoek, 104, 431-434. doi:10.1007/s10482-013-9953-x The full published manuscript is available http://link.springer.com/article/10.1007%2Fs10482-013-9953-x
DOI: 10.6084/m9.figshare.781344
title: Nectar in Pin Cherry (Prunus pensylvanica)

description: I provide data on the nectar volume and sugar concentrations (in sucrose equivalents) of the nectar of the early-spring shrub Pin Cherry (Prunus pensylvanica). 4 datasets illustrate the importance of quick processing following removal of the flowers from the tree. Both SYSTAT and Excel versions of the raw data are available.
DOI: 10.6084/m9.figshare.782261.v3
title: Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.

description: TRAMS (Tool for Rapid Annotation of Microbial SNPs) is a program for functional annotation of genomic SNPs which is available to download as a single file executable for WINDOWS users with limited computational experience and as a Python script for Mac OS and Linux users. TRAMS needs only a tab delimited text file containing SNP locations, reference nucleotide and SNPs in different strains along with a reference genome sequence in standard GenBank or EMBL format. TRAMS annotates SNPs as synonymous, non-synonymous or nonsense. Non-synonymous SNPs in start and stop codons are separated as non-start and non-stop SNPs, respectively. SNPs in overlapping features are annotated separately for each feature and multiple nucleotide polymorphisms (MNPs) within a codon are combined prior to annotation. We have also developed a workflow for use in Galaxy to map short reads to a reference genome and extract and annotate the SNPs. TRAMS is a simple program for rapid and accurate annotation of SNPs that will be very useful for microbiologists in analysing genomic diversity in microbial populations. Availability: TRAMS is available here to download as Python script and single file executable for WINDOWS and also in the Galaxy tool shed (http://toolshed.g2.bx.psu.edu/view/rreumerman/snptools). <strong>Please cite</strong> Reumerman, R. A., Tucker, N. P., Herron, P. R., Hoskisson, P. A., & Sangal, V. (2013). Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes. Antonie van Leeuwenhoek, 104, 431-434. doi:10.1007/s10482-013-9953-x The full published manuscript is available http://link.springer.com/article/10.1007%2Fs10482-013-9953-x UPDATED 24th September see Changelog.txt ==[Version1.0.2]== 130923:Fixed issue where program crashed on absence of certain features in genbank file. ==[Version1.0.1]== 130919:Fixed issue where'Gene'and'Source' were not recognized as'gene'and'source'. 130919:Fixed issue where features' strands were mysteriously no longer recognized if on +1 strand.
DOI: 10.6084/m9.figshare.781332
title: ESIP People RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the people expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781333
title: ESIP RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This files are the bulk RDF data used to create the Linked Open Data.
DOI: 10.6084/m9.figshare.781330
title: ESIP Meeting RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the meetings expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781331
title: ESIP Organizations RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the organizations expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781331.v1
title: ESIP Organizations RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the organizations expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781326
title: Gaussian Job Archive for C9H9ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.781329
title: ESIP Cluster RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the clusters expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781325
title: The Samoa Savai’i Faasaleleaga (FAASALMESH) – Management Systems Tools and Performance Architecture Analysis

description: <strong><em>ABSTRACT</em></strong> <strong><em>This paper provides a description of the FAASAL Wireless Mesh Network (WMN) management systems tools, performance architecture and analysis. Firstly, it introduces the developed architectural engineering design of the FAASAL IEEE.802 a/b/g/n indoor and outdoor test-bed deployment for testing simulation and physical operation. The test-bed developed design includes its management infrastructure tools specification for operational control, performance architectural and analysis. The main task of the FAASAL WMN is to satisfy four conflicting requirements from different user groups including: the Systems Administrator, Systems Research and Development, Ubiquity Broadband Internet Users and Organisational Strategic and Operational Management. The FAASALMESH introduces a complete management infrastructure and components including: (1) Configuration Tools; </em></strong><strong><em> (2) GHz Spectrum Management </em></strong><strong><em>hardwarearchitectures:ARM,MIPSandx86; (3) the BackTrack Linux architectural Operation System,</em></strong><strong><em></em></strong><strong><em>(4) The Spectrum Analyzer Wi-Spy 2.4i entry-level 2.4 GHz; (5) A FAASALMESH unique Authentication Infrastructure which uses the </em></strong><strong><em>FreeRADIUS tool; and finally </em></strong><strong><em>(6) the FAASALMESH introduces a unique internetwork aspect by realising the importance of the network as a</em></strong><em> <strong>business. The FAASALAMESH uses the two SAP Business Intelligence (BI) software platforms including: the</strong></em><strong><em>BusinessObjects and the BusinessObjects</em></strong><strong><em> RDS.</em></strong><strong></strong> <strong><em> </em></strong><strong></strong>
DOI: 10.6084/m9.figshare.781326.v1
title: Gaussian Job Archive for C9H9ClO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.781329.v1
title: ESIP Cluster RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the clusters expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781332.v2
title: ESIP People RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the people expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781318
title: Report: Impacts of the Mobile Telephone on Emerging Markets

description: <strong>Report on Impacts of the Mobile Telephone on Emerging Markets</strong> <strong> </strong> <strong>ABSTRACT</strong> The mobile telephone have increasingly become a dominant service that is accessible to many people irrespective of their physical location. This report describes the impact of the mobile telephone on emerging markets. It was found that the mobile telephone have increasingly become a desired device that it has reached planetary levels of penetration. According to figures released in July 2012 by the World Bank, there are 6 billion mobile subscriptions worldwide and 77% of these are from developing nations. Overall, the mobile telephone impact positively on the economic and social welfare worldwide by generating Gross Domestic Purposes (GDP) and job opportunities, maximise productivity and taxation revenues. However, mobile telephones impact on other institutions and human domains such as non-government organisations, e-learning and preventative health as well as natural disaster emergencies. Finally, in the most simplicity form, it has been suggested that the mobile telephone is the most preferred means of distant communication because of its ease of use, flexibility, affordability and capability to reach out to rural and remote areas.
DOI: 10.6084/m9.figshare.781332.v1
title: ESIP RDF Data

description: We are working to create Linked Open Data from the people, meetings, and clusters within the Earth Science Information Partnership (ESIP). This file represents the people expressed as RDF. Note that the URIs are likely to change as this data begins to be served publicly as Linked Open Data. The files will be updated at that time.
DOI: 10.6084/m9.figshare.781316
title: Essay in Ethics in Patients’ Security Privacy and Confidentiality in an Electronic Environment

description: <strong>All ethical questions arise initially out of the human agency and technology due to its capability to augment the human mental and physical powers is the co-conspirator .On July 25, 2011, an Accretive Corporation employee lost an unencrypted laptop containing sensitive information on numerous patients of the Fairview and North Memorial Healthcare providers in Minneapolis. The purpose of this essay is to discuss ethics involving patients’ security, privacy and confidentiality in a healthcare electronic environment. It was found that an ethical issue may arise whenever one party in pursuit of its goals engages in a behaviour that materially affects the ability of another party to pursue its goals. The guiding principle, is that an agent should choose an act resulting in the greatest common good for the greatest number. Also pursuit of justice should come from fair dealing and right action which are usually based on rules made by the society that should be the same and applied equally for all.</strong>