cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20221554
title: Supplementary Material for: Cytokine Expression in Staphylococcal and Streptococcal Endophthalmitis

description: <b><i>Background:</i></b> Endophthalmitis is an infection of ocular tissues, often with devastating outcomes for vision. Immunomodulation is an emerging avenue for therapeutic intervention in endophthalmitis, with the expression of cytokines central to potential mechanisms. This literature review with a systematic approach characterizes the cytokine expression in both animal and human staphylococcal and streptococcal endophthalmitis. <b><i>Method and Results:</i></b> Four online databases were searched for studies profiling cytokine levels in animal models or human populations with staphylococcal and/or streptococcal endophthalmitis. Of the 1,060 articles identified, 14 studies were included in this review comprising eight animal models and six human populations. Mouse, rat, and rabbit models of <i>Staphylococcus aureus</i>, <i>Staphylococcus epidermidis</i>, and <i>Streptococcus pneumoniae</i> endophthalmitis had elevated levels of IL-1β, IL-6, IFN-γ, TNF-α, and IL-8, with earlier peaks observed in <i>S</i>. <i>epidermidis</i> infection. Human endophthalmitis demonstrated significantly increased mediator levels compared to controls for a range of pro-inflammatory and anti-inflammatory cytokines, chemokines, and growth factors. Several associations were established between cytokine concentrations and both initial visual acuity and visual prognosis, with no consistent correlations across trials. <b><i>Conclusions:</i></b> It may be that virulence factors and the combinations of toll-like receptors activated influence the pathogen-specific visual outcomes observed in endophthalmitis. Furthermore, disease severity and potential therapeutic targets may be dependent on synergistic and compensatory cytokine pathways and the expression of anti-inflammatory mediators. Future research should aim to better characterize the roles of inflammatory mediators and solidify associations between pathogens, inflammation, and endophthalmitis outcomes. This has exciting implications for the prevention and treatment of endophthalmitis in clinical settings.
DOI: 10.21227/f43v-ww19
title: Realistic vehicle trajectories and driving parameters from CARLA autonomous driving simulator

description: This dataset contains realistic trajectories from multiple vehicles moving in the simulated environment of CARLA autonomous driving simulator. Two different maps (Map04 and Map10) have been exploited, corresponding to realistic driving conditions in simulated urban environments. Five sub-datasets have been extracted, corresponding to different number of vehicles, e.g., 50, 100 and 200, spawned in each map for 200 seconds. Every record of the dataset consists of: time stamp, vehicle ID, ground truth position x, y, z in CARLA reference system, ground truth pitch, roll and yaw angles (in degrees), ground truth linear velocity in x, y and z direction (m/s), ground truth linear acceleation in x, y and z direction (m^2/s) and ground truth angular velocity in x, y and z direction (deg/s).
DOI: 10.5281/zenodo.6793170
title: Feature Extraction Using Hidden Markov Model for a Phonetic Process

description: Speech is one of the primary forms of communication among humans. In real life, a dictionary is used to seek the pronunciation of a complex word; but, for computers, this look-up table is called a phonetic dictionary. A speech recognition process tags a word-utterance to its phoneme structure, thereby returning the grapheme representation. However, the speech recognition process is challenging because of the contextual relationship between words and sentences, dependent on speakers’ intentions. Further, factors influencing time, accents, noisy environment, and data security impose accuracy threats. The present research study proposes a new hybrid speech recognition model by considering three significant aspects: sound generation through phonetic representation, sound acoustics for transmission, and sound reception on how the sound is received. These steps are achieved through a speech-to-text model divided into various stages such as noise removal, speech-pause detection, feature extraction through framing, and windowing by adopting Hidden Markov Model (HMM). The implementation is performed on a phonetic tool, Praat. The robustness of the model is estimated using evaluation metrics such as f-measure and accuracy, resulting in 98% and 99% scores, respectively. Thus, the proposed approach efficiently transforms the spoken words into their corresponding text.
DOI: 10.5281/zenodo.6793169
title: Feature Extraction Using Hidden Markov Model for a Phonetic Process

description: Speech is one of the primary forms of communication among humans. In real life, a dictionary is used to seek the pronunciation of a complex word; but, for computers, this look-up table is called a phonetic dictionary. A speech recognition process tags a word-utterance to its phoneme structure, thereby returning the grapheme representation. However, the speech recognition process is challenging because of the contextual relationship between words and sentences, dependent on speakers’ intentions. Further, factors influencing time, accents, noisy environment, and data security impose accuracy threats. The present research study proposes a new hybrid speech recognition model by considering three significant aspects: sound generation through phonetic representation, sound acoustics for transmission, and sound reception on how the sound is received. These steps are achieved through a speech-to-text model divided into various stages such as noise removal, speech-pause detection, feature extraction through framing, and windowing by adopting Hidden Markov Model (HMM). The implementation is performed on a phonetic tool, Praat. The robustness of the model is estimated using evaluation metrics such as f-measure and accuracy, resulting in 98% and 99% scores, respectively. Thus, the proposed approach efficiently transforms the spoken words into their corresponding text.
DOI: 10.5281/zenodo.6785659
title: Mehrabi et al. 2022. Research priorities for global food security under extreme events. Supplementary data and code.

description: Data and script for reproducing the final results shown in Mehrabi et al., Research priorities for global food security under extreme events, One Earth (2022), https://doi.org/10.1016/j.oneear.2022.06.008. Simply download and read the Mehrabi2022_EEGFS.pdf or the Mehrabi2022_EEGFS.Rmd file from which it was created.
DOI: 10.5281/zenodo.6785658
title: Mehrabi et al. 2022. Research priorities for global food security under extreme events. Supplementary data and code.

description: Data and script for reproducing the final results shown in Mehrabi et al., Research priorities for global food security under extreme events, One Earth (2022), https://doi.org/10.1016/j.oneear.2022.06.008. Simply download and read the Mehrabi2022_EEGFS.pdf or the Mehrabi2022_EEGFS.Rmd file from which it was created.
DOI: 10.6084/m9.figshare.20221963.v1
title: Additional file 3 of Spermidine reduces neuroinflammation and soluble amyloid beta in an Alzheimer’s disease mouse model

description: Additional file 3. Supplementary Table 1.
DOI: 10.6084/m9.figshare.20221963
title: Additional file 3 of Spermidine reduces neuroinflammation and soluble amyloid beta in an Alzheimer’s disease mouse model

description: Additional file 3. Supplementary Table 1.
DOI: 10.48370/ofd/1wej5e/yklcs6
title: FMW_Peniophora incarnata_M_2186.JPG

description: :unav
DOI: 10.48370/ofd/1wej5e/gat4ma
title: FMW_Peniophora incarnata_M_2186 (2).JPG

description: :unav
DOI: 10.48370/ofd/1wej5e/2yz9jl
title: FMW_Peniophora incarnata_M_2186 (3).JPG

description: :unav
DOI: 10.48370/ofd/tlnh4y/mico9s
title: FMW_Peniophora incarnata_M_1952 (2).JPG

description: :unav
DOI: 10.48370/ofd/1wej5e
title: Peniophora incarnata (Pers.) P. Karst, 2186

description: Fungarium Makromycetes
DOI: 10.48370/ofd/tlnh4y/rtnogb
title: FMW_Peniophora incarnata_M_1952.JPG

description: :unav
DOI: 10.48370/ofd/tlnh4y
title: Peniophora incarnata (Pers.) P. Karst, 1952

description: Fungarium Makromycetes
DOI: 10.48370/ofd/5niqla/ndjyb3
title: FMW_Peniophora incarnata_M_1907.JPG

description: :unav
DOI: 10.48370/ofd/5niqla/alw2n8
title: FMW_Peniophora incarnata_M_1907 (2).JPG

description: :unav
DOI: 10.48370/ofd/5niqla
title: Peniophora incarnata (Pers.) P. Karst, 1907

description: Fungarium Makromycetes
DOI: 10.48370/ofd/cvckei/ioluln
title: FMW_Peniophora incarnata_M_3068 (2).JPG

description: :unav
DOI: 10.48370/ofd/cvckei/cx1gtp
title: FMW_Peniophora incarnata_M_3068.JPG

description: :unav
DOI: 10.48370/ofd/cvckei
title: Peniophora incarnata (Pers.) P. Karst, 3068

description: Fungarium Makromycetes
DOI: 10.48370/ofd/jbqwp4/o0cywb
title: FMW_Peniophora incarnata_M_1196 (2).JPG

description: :unav
DOI: 10.48370/ofd/jbqwp4/ymbl4b
title: FMW_Peniophora incarnata_M_1196.JPG

description: :unav
DOI: 10.48370/ofd/jbqwp4
title: Peniophora incarnata (Pers.) P. Karst, 1196

description: Fungarium Makromycetes
DOI: 10.48370/ofd/02nutp/zzknky
title: FMW_Peniophora incarnata_M_0645.jpg

description: :unav
DOI: 10.48370/ofd/02nutp
title: Peniophora incarnata (Pers.) P. Karst, 645

description: Fungarium Makromycetes
DOI: 10.6084/m9.figshare.20221713.v1
title: Global hotspots for soil nature conservation - survey dataset + supporting code

description: We used composite topsoil samples from global field surveys which were conducted between 2016-2019 following standardized field protocols. This global field survey includes 151 locations from all continents and 23 countries, from which 615 composite topsoil samples were collected, providing a large representation of all climatic and vegetation biomes in the planet (Supplementary Fig. 1). Between three and five composite soil (top ~0-10cm) samples (from 5-10 soil cores) were collected in these locations (ranging between 0.09-0.25 ha) following the protocol described in Maestre et al. (2012). Environmental predictors were collected from publicly available datasets. Elevation and climatic information for each location was obtained from WorldClim v2 (1 km2 resolution; https://www.worldclim.org/data/bioclim.html), including information on climatologies and on the seasonality of temperature and precipitation. Soil pH was determined with a soil pH-meter from a soil-water mix 71. Texture was determined as in Maestre et al. 71 and, in the case of missing information, this was filled using Soilgrid v2 (https://soilgrids.org; as in 16). Information on dominant vegetation (forest, shrublands or grasslands) was obtained as part of the field survey.
DOI: 10.6084/m9.figshare.20222007
title: Healthcare access Tokyp Japan

description: Overall healthcare accessibility index in Tokyo Metropolis across three demographic groups: the young (age 0-18), adult (age 18-65) and elderly (age +65)
DOI: 10.48370/ofd/qzxdga/tp8kgi
title: FMW_Peniophora incarnata_M_5106.jpg

description: :unav
DOI: 10.48370/ofd/qzxdga
title: Peniophora incarnata (Pers.) P. Karst, 5106

description: Fungarium Makromycetes
DOI: 10.48370/ofd/equtaf/9vsqbg
title: FMW_Peniophora incarnata_M_4894.JPG

description: :unav
DOI: 10.48370/ofd/equtaf/lzyz1y
title: FMW_Peniophora incarnata_M_4894 (2).JPG

description: :unav
DOI: 10.48370/ofd/equtaf
title: Peniophora incarnata (Pers.) P. Karst, 4894

description: Fungarium Makromycetes
DOI: 10.48370/ofd/90kt3b/el6sdn
title: FMW_Peniophora incarnata_M_4874.JPG

description: :unav
DOI: 10.48370/ofd/90kt3b/vuxefs
title: FMW_Peniophora incarnata_M_4874 (2).JPG

description: :unav
DOI: 10.48370/ofd/90kt3b/jdi7wg
title: FMW_Peniophora incarnata_M_4874 (3).JPG

description: :unav
DOI: 10.48370/ofd/90kt3b
title: Peniophora incarnata (Pers.) P. Karst, 4874

description: Fungarium Makromycetes
DOI: 10.48370/ofd/vdxlru/giaqak
title: FMW_Peniophora incarnata_M_4139 (2).JPG

description: :unav
DOI: 10.48370/ofd/vdxlru/ixpzyt
title: FMW_Peniophora incarnata_M_4139.JPG

description: :unav
DOI: 10.48370/ofd/vdxlru/qkwiec
title: FMW_Peniophora incarnata_M_30684139.JPG

description: :unav
DOI: 10.48370/ofd/vdxlru
title: Peniophora incarnata (Pers.) P. Karst, 4139

description: Fungarium Makromycetes
DOI: 10.48370/ofd/trcbtj/g2qk71
title: FMW_Peniophora incarnata_M_5039.JPG

description: :unav
DOI: 10.48370/ofd/trcbtj/odr8yi
title: FMW_Peniophora incarnata_M_5039 (2).JPG

description: :unav
DOI: 10.48370/ofd/trcbtj/ok3k5w
title: FMW_Peniophora incarnata_M_5039 (3).JPG

description: :unav
DOI: 10.48370/ofd/trcbtj
title: Peniophora incarnata (Pers.) P. Karst, 5039

description: Fungarium Makromycetes
DOI: 10.48370/ofd/53wr4o/4rqzts
title: FMW_Peniophora incarnata_M_5034.JPG

description: :unav
DOI: 10.48370/ofd/53wr4o/pknhbg
title: FMW_Peniophora incarnata_M_5034 (3).JPG

description: :unav
DOI: 10.48370/ofd/53wr4o/uf8mpf
title: FMW_Peniophora incarnata_M_5034 (2).JPG

description: :unav
DOI: 10.48370/ofd/z1dzzt/yrocjq
title: FMW_Peniophora incarnata_M_4737 (3).JPG

description: :unav
DOI: 10.48370/ofd/53wr4o
title: Peniophora incarnata (Pers.) P. Karst, 5034

description: Fungarium Makromycetes
DOI: 10.48370/ofd/z1dzzt/usuv0t
title: FMW_Peniophora incarnata_M_4737.JPG

description: :unav
DOI: 10.48370/ofd/z1dzzt/bxcqhc
title: FMW_Peniophora incarnata_M_4737 (2).JPG

description: :unav
DOI: 10.48370/ofd/z1dzzt
title: Peniophora incarnata (Pers.) P. Karst, 4737

description: Fungarium Makromycetes
DOI: 10.15151/esrf-es-817605317
title: SAXS enabled advanced flow reactors allowing high resolution characterisation of polymerisation induced self assembly

description: We wish to use SAXS to follow the formation of block copolymer nanoparticles using a bespoke continuous-flow reactor equipped with a SAXS compatible flow-cell. By tuning residence times, we will analyse specific timepoints for a prolonged duration, unlike traditional in-situ studies where one instantaneous measurement provides data. Furthermore, we intend to optimise the flow cell so observed timepoints can be monitored by characterising different locations on the cell. We will also use the cell to conduct accelerated kinetic studies using a transient technique in which rapid screening of residence times generated by a flow rate switch is performed. This technique requires high intensity x-rays afforded by synchrotron sources enabling short acquisition times. By identification of particle properties such as core diameter at various residence times the synthetic conditions can be altered to allow for tailoring of the produced product.
DOI: 10.15151/esrf-es-840115305
title: Arsenic contamination in sediments, plant and animal species from a WWF reserve

description: The WWF reserve "Oasi di Alviano" in Central Italy includes most of the wetland habitats and hosts numerous plant and animal species. However, metals and metalloids contamination has been detected in this area, suggesting that the plants and animals living there have adapted to tolerate this contamination. This synchrotron experiment will shed light on species-specific detoxification mechanisms enacted by both plants (arboreal and herbaceous) and animals (aquatic and terrestrial) to tolerate arsenic by analysing As speciation and accumulation in various organs of the plant/animal. Moreover, the comparison between various matrices (sediment, plant, animal) will allow to investigate the fate of arsenic in the environment and ultimately on the food chain.
DOI: 10.15151/esrf-es-816052788
title: Dynamical processes in out-of-equilibrium materials at extreme conditions

description: The principle aim of this project is to perform new ground breaking experiments in glass formers at extreme conditions and in a previously unexplored dynamical range by using X-ray Photon Correlation Spectroscopy (XPCS) at high energy and in combination with in-situ high pressure and high temperature devices. This takes benefits from the current EBS upgrade of ESRF which has revolutionized the XPCS technique thanks to a 100 times higher coherent flux with the extension into hard x-rays up to 25 keV. The knowledge of the relaxation processes occurring in glass formers and their evolution under applied constraints like pressure and temperature is important not only from the theoretical point of view, but also for technological applications as it may provide important receipes for improving their stability and properties during processing and operation. The extension of XPCS to studies at extreme conditions will be of interest of many scientist working in different fields.
DOI: 10.15151/esrf-es-816536591
title: Characterization of tropical soil P species and their susceptibility to labile C compounds

description: Tropical soils are often highly weathered, presenting poor nutritional conditions for plant growth. In these soils, phosphorus (P) is not only depleted, but the remaining P is often not bioavailable as most of the soil P is strongly adsorbed to mineral phases. Under such low accessibility, the productivity of tropical plants is strained, and they need to compete or cooperate with soil microorganisms at the microscale to acquire P from the soil. This acquisition is almost exclusively dependent on the exudation of organic compounds into the soil, that liberate P for the plants. To investigate the effect of different organic compounds on soil P microspatial patterns and speciation, we have conducted a 13C-enrichment microdialysis experiment, which simulates root exudation into the soil. To unravel the correlative relationship between exudates, microorganisms and P we propose the combination of fluorescence microscopy with synchrotron SXM and NanoSIMS.
DOI: 10.6092/9f75ad8a-ca32-4a72-bf69-167119b2cc12
title: EMODnet Thematic Lot n° 4 – Chemistry - Methodology for data QA/QC and DIVA products. V8

description: Updated Guidelines for standard procedures for quality control (QC) of marine chemical data and for the generation of DIVA data products required in the framework of EMODnet Chemistry.
DOI: 10.6084/m9.figshare.20221794
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 108)

description: There are 17 files in this dataset. This is the 108th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20221794.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 108)

description: There are 17 files in this dataset. This is the 108th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20221797.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 109)

description: There are 17 files in this dataset. This is the 109th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20221797
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 109)

description: There are 17 files in this dataset. This is the 109th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.