cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.966637
title: Radiosonde level2 measurements in NetCDF format gathered during MARIA S. MERIAN cruise MSM114/2 (ARC)

description: The ship campaign MSM114/2 (ARC) with the German research vessel Maria S. Merian took place from 22 January to 23 February, 2023. The campaign started in Mindelo, Cape Verde, and ended in Punta Arenas, Chile. During the campaign, the Intertropical Convergence Zone (ITCZ) was completely crossed three times at an almost constant longitude of 23˚W yielding three profiles of the ITCZ. Afterwards, a storm was passed in the Roaring Forties, in the South Atlantic. Here, we present level 2 radiosonde data as part of a series of standardised data sets of the atmospheric and oceanographic observations gathered during the ARC campaign. The radiosonde level 2 data are interpolated to altitude levels with distance 10 m. They include temperature, dew point temperature, potential temperature, mixing ratio, specific and relative humidity, wind speed and direction as well as the horizontal wind components u and v as function of start time and altitude.
DOI: 10.5281/zenodo.13824822
title: Mathematical Subjective Questions Handwriting Recognition TestSet
DOI: 10.5281/zenodo.13824823
title: Mathematical Subjective Questions Handwriting Recognition TestSet
DOI: 10.5281/zenodo.13824178
title: Generated Metastatic CT 3D Femurs with lesions segmentation 3/3

description: This file regroups the 5675 synthetic femurs used and described in the paper: "Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models" Saillard et al. 

Three repositories are needed to form the full archive. When all are downloaded, they can be deflated with the following bash command : 

cat Generated_3DCT_Metastatic_Femurs.tar.gz* | tar faxv -

see the Generated Metastatic CT 3D Femurs with lesions segmentation 1/3 for information.
DOI: 10.5281/zenodo.13824179
title: Generated Metastatic CT 3D Femurs with lesions segmentation 3/3

description: This file regroups the 5675 synthetic femurs used and described in the paper: "Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models" Saillard et al. 

Three repositories are needed to form the full archive. When all are downloaded, they can be deflated with the following bash command : 

cat Generated_3DCT_Metastatic_Femurs.tar.gz* | tar faxv -

see the Generated Metastatic CT 3D Femurs with lesions segmentation 1/3 for information.
DOI: 10.5281/zenodo.13824176
title: Generated Metastatic CT 3D Femurs with lesions segmentation 2/3

description: This file regroups the 5675 synthetic femurs used and described in the paper: "Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models" Saillard et al. 

Three repositories are needed to form the full archive. When all are downloaded, they can be deflated with the following bash command : 

cat Generated_3DCT_Metastatic_Femurs.tar.gz* | tar faxv -

 

Generated CT Scans are organized in two directories: one for files generated with DDPM this one) and one without DDPM.

├── Generated_3DCT_Metastatic_Femurs_with_DDPM │   ├── img│   ├── lbl│   └── msk

└── Generated_3DCT_Metastatic_Femurs_NO_DDPM    ├── img    ├── lbl    └── msk

The content of each directory is as follows: 



img : the generated 3D CT scan (nii.gz format) from the 26 healthy femurs

lbl : the lesions segmentation (nii.gz format) of the generated 3D CT scan

msk : the segmentations of the 26 healthy femurs (nii.gz)


A given filename corresponds to in img and lbl directories :



./lbl/MEK03les0MEK14.nii.gz is the lesions segmentation of ./img/MEK03les0MEK14.nii.gz.

./lbl/MEK03les197MEK28.nii.gz is the lesions segmentation of  ./img/MEK03les197MEK28.nii.gz


But in msk, the corresponding femur mask for these examples is ./msk/MEK03.nii.gz
DOI: 10.5281/zenodo.13824177
title: Generated Metastatic CT 3D Femurs with lesions segmentation 2/3

description: This file regroups the 5675 synthetic femurs used and described in the paper: "Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models" Saillard et al. 

Three repositories are needed to form the full archive. When all are downloaded, they can be deflated with the following bash command : 

cat Generated_3DCT_Metastatic_Femurs.tar.gz* | tar faxv -

 

Generated CT Scans are organized in two directories: one for files generated with DDPM this one) and one without DDPM.

├── Generated_3DCT_Metastatic_Femurs_with_DDPM │   ├── img│   ├── lbl│   └── msk

└── Generated_3DCT_Metastatic_Femurs_NO_DDPM    ├── img    ├── lbl    └── msk

The content of each directory is as follows: 



img : the generated 3D CT scan (nii.gz format) from the 26 healthy femurs

lbl : the lesions segmentation (nii.gz format) of the generated 3D CT scan

msk : the segmentations of the 26 healthy femurs (nii.gz)


A given filename corresponds to in img and lbl directories :



./lbl/MEK03les0MEK14.nii.gz is the lesions segmentation of ./img/MEK03les0MEK14.nii.gz.

./lbl/MEK03les197MEK28.nii.gz is the lesions segmentation of  ./img/MEK03les197MEK28.nii.gz


But in msk, the corresponding femur mask for these examples is ./msk/MEK03.nii.gz
DOI: 10.15468/dl.q6zxxf
title: Occurrence Download

description: A dataset containing 299 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monochasma savatieri Franch. ex Maxim."
 ]
}

 The dataset includes 299 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025703-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tswzgz
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.03589 41.53610,4.33983 41.53610,4.33983 43.28639,-0.03589 43.28639,-0.03589 41.53610))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sympetrum danae (Sulzer, 1776)"
 ]
}

 The dataset includes 331 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025704-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcwc4u
title: Occurrence Download

description: A dataset containing 2140 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of Buprestidae housed at the natural history museum collection in Nairobi, Kenya"
 ]
}

 The dataset includes 2140 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025705-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyjsmp
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Festuca alatavica (St.-Yves) Roshev.",
 "Year 1970-2024"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025706-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg2rnf
title: Occurrence Download

description: A dataset containing 10646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pelargopsis capensis (Linnaeus, 1766)"
 ]
}

 The dataset includes 10646 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025707-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t8324d
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Dactylorhiza viridis (L.) R.M.Bateman, Pridgeon & M.W.Chase"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025708-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27080908.v1
title: 质粒序列信息.xlsx

description: The table details the plasmids used in the paper.
DOI: 10.6084/m9.figshare.27080908
title: 质粒序列信息.xlsx

description: The table details the plasmids used in the paper.
DOI: 10.6084/m9.figshare.27080896.v2
title: düşük (hapı) düşük (ilacı) 0543 529 72 06 istenmeyen gebeliğe son verebilirsiniz.

description: EVDE GÜVENLİ İŞLEMKürtaj olmak istemeyenler için evde kullanılabilecek Cytotec ilacı, doğru kullanıldığında rahat ve kolay bir düşük işlemi sağlar. İlacın kullanım talimatlarını dikkatlice okumanızı ve bir sağlık profesyonelinin önerdiği şekilde kullanmanızı tavsiye ederiz.DESTEK VE BİLGİLENDİRMEWebsite üzerinde, Cytotec ilacının doğru ve güvenli kullanımı hakkında bilgileri bulabilirsiniz. Olası sorunlar ve yan etkiler konusunda bilgilendirilir, aklınıza takılan sorular için destek alabilirsiniz.
DOI: 10.15468/dl.p8vt76
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Festuca alatavica (St.-Yves) Roshev.",
 "Year 1970-2024"
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025709-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6e7kyx
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is false",
 "TaxonKey is Viscum album var. album"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025710-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cuaym9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is false",
 "TaxonKey is Viscum album var. album"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025711-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10650085
title: Dataset to several methods for assessment of research waste: a scoping review
DOI: 10.5281/zenodo.10650086
title: Dataset to several methods for assessment of research waste: a scoping review
DOI: 10.5281/zenodo.13824997
title: Dataset to several methods for assessment of research waste: a scoping review
DOI: 10.5281/zenodo.10118362
title: Reproduction package for the paper "Transient study using LoTSS – framework development and preliminary results"

description: This is a basic reproduction package for the paper "Transient study using LoTSS – framework development and preliminary results" by de Ruiter et al. (2024). The folders analysis, P164+55, simulations, source_finder and transient_rates have been compressed.

 

Raw Data

The visibilities that are used to create the subtraction images for the LoFAR Two-metre Sky Survey (LoTSS) can be found in the following Surf repository.

 

Software

A script to perform the sky model subtraction exists within the pipeline for the LoTSS processing. The imaging software WSClean can be downloaded here  and a manual to get started can be found here. The command that was used to create the subtraction images is (as described in Table 1 of the paper):

 



wsclean -name subtract_images_8sec_P164+55_pad/P164+55 -weight briggs -0.25 -padding 2.0 -no-reorder -niter 0 -size 2200 2200 -scale 6asec -pol I -intervalsout 3600 -no-dirty P164+55_object.dysco.sub.shift.avg.weights.ms.archive0


 

The scripts for source finding and filtering of the transient candidates are given in source_finder/ and analysis/. A detailed description of how to use this is given in subtraction images transient pipeline.pdf. Also the required for python packages are described in detail here.

 

 

Figures and Tables

simulations/

The jupyter notebook visualise_simulated_transients.ipynb can be used to visualize the 8 second and 1 hour simulated transient sources.

 

transient_rates/

The jupyter notebook transient_rates.ipynb can be used to recreate the limits on the transient surface density (Figure 13).

 

 

Intermediate data products 

This subtraction images for a single pointing are available in this reproduction package in P164+55/ The subtraction images for all the pointings have a total size of 2.8 TB, therefore, we only include the P164+55 pointing. The subtraction images for the 1hr snapshots, 2 minute snapshots and most of the 8 second snapshots (up to 50 GB) have been included. The subtraction images for other pointings can be requested by sending an email to irisderuiter7@gmail.com

 The subtraction images with simulated transients are included in simulations/
DOI: 10.5281/zenodo.10118363
title: Reproduction package for the paper "Transient study using LoTSS – framework development and preliminary results"

description: This is a basic reproduction package for the paper "Transient study using LoTSS – framework development and preliminary results" by de Ruiter et al. (2024). The folders analysis, P164+55, simulations, source_finder and transient_rates have been compressed.

 

Raw Data

The visibilities that are used to create the subtraction images for the LoFAR Two-metre Sky Survey (LoTSS) can be found in the following Surf repository.

 

Software

A script to perform the sky model subtraction exists within the pipeline for the LoTSS processing. The imaging software WSClean can be downloaded here  and a manual to get started can be found here. The command that was used to create the subtraction images is (as described in Table 1 of the paper):

 



wsclean -name subtract_images_8sec_P164+55_pad/P164+55 -weight briggs -0.25 -padding 2.0 -no-reorder -niter 0 -size 2200 2200 -scale 6asec -pol I -intervalsout 3600 -no-dirty P164+55_object.dysco.sub.shift.avg.weights.ms.archive0


 

The scripts for source finding and filtering of the transient candidates are given in source_finder/ and analysis/. A detailed description of how to use this is given in subtraction images transient pipeline.pdf. Also the required for python packages are described in detail here.

 

 

Figures and Tables

simulations/

The jupyter notebook visualise_simulated_transients.ipynb can be used to visualize the 8 second and 1 hour simulated transient sources.

 

transient_rates/

The jupyter notebook transient_rates.ipynb can be used to recreate the limits on the transient surface density (Figure 13).

 

 

Intermediate data products 

This subtraction images for a single pointing are available in this reproduction package in P164+55/ The subtraction images for all the pointings have a total size of 2.8 TB, therefore, we only include the P164+55 pointing. The subtraction images for the 1hr snapshots, 2 minute snapshots and most of the 8 second snapshots (up to 50 GB) have been included. The subtraction images for other pointings can be requested by sending an email to irisderuiter7@gmail.com

 The subtraction images with simulated transients are included in simulations/
DOI: 10.15468/dl.gf9fvy
title: Occurrence Download

description: A dataset containing 46217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 46217 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025712-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7tgdz
title: Occurrence Download

description: A dataset containing 658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 658 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025713-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ks4wh
title: Occurrence Download

description: A dataset containing 658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 658 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025714-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25745928
title: Nijat Narimanov, Jonna M. Heuschele, Martin H. Entling, Florian Menzel & Laia Mestre (2024). Differential effects of ephemeral and stable predator chemical cues on spider antipredator behaviour. <i>Journal of Chemical Ecology</i>.

description: Dataset of the study: "Differential effects of ephemeral and stable predator chemical cues on spider antipredator behaviour" in <i>Journal of Chemical Ecology</i>.
DOI: 10.6084/m9.figshare.25745928.v2
title: Nijat Narimanov, Jonna M. Heuschele, Martin H. Entling, Florian Menzel & Laia Mestre (2024). Differential effects of ephemeral and stable predator chemical cues on spider antipredator behaviour. <i>Journal of Chemical Ecology</i>.

description: Dataset of the study: "Differential effects of ephemeral and stable predator chemical cues on spider antipredator behaviour" in <i>Journal of Chemical Ecology</i>.
DOI: 10.6084/m9.figshare.25745928.v1
title: Nijat Narimanov, Jonna M. Heuschele, Martin H. Entling, Florian Menzel & Laia Mestre (2024). Differential effects of ephemeral and stable predator chemical cues on spider antipredator behaviour.

description: Dataset of the study: "Differential effects of ephemeral and stable predator chemical cues on spider antipredator behaviour".
DOI: 10.34740/kaggle/dsv/9453744
title: ⏳ endoflife.date database (duckdb)
DOI: 10.5281/zenodo.11576097
title: The data for "Entrapment risk precedes and is more fatal than instability risk in mountainous flash floods"

description: The DEM and inundation depth data of the central area of Liulin Town were obtained by field measurement after the “8.12” flood event.
DOI: 10.5281/zenodo.13824984
title: Data set: Evidence for the validity of the Attitudes toward Sexual Behaviours Scale (ASBS) with Canadian young people
DOI: 10.5281/zenodo.13824985
title: Data set: Evidence for the validity of the Attitudes toward Sexual Behaviours Scale (ASBS) with Canadian young people
DOI: 10.15468/dl.st8bzb
title: Occurrence Download

description: A dataset containing 38268 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viscum album subsp. album"
 ]
}

 The dataset includes 38268 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025716-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11571771
title: The data for "Entrapment risk precedes and is more fatal than instability risk in mountainous flash floods"

description: The DEM and inundation depth data of the central area of Liulin Town were obtained by field measurement after the “8.12” flood event.
DOI: 10.5281/zenodo.11571772
title: The data for "Entrapment risk precedes and is more fatal than instability risk in mountainous flash floods"

description: The DEM and inundation depth data of the central area of Liulin Town were obtained by field measurement after the “8.12” flood event.
DOI: 10.15468/dl.6a7f7n
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Limonium malacitanum B.Diez"
 ]
}

 The dataset includes 66 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025717-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3zcwp
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Limonium malacitanum B.Diez"
 ]
}

 The dataset includes 66 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025718-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qv6sdn
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Betula celtiberica Rothm. & Vasc."
 ]
}

 The dataset includes 407 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025719-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqsksd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "StateProvince is XiZang",
 "TaxonKey is Ligularia virgaurea (Maxim.) Mattf. ex Rehder & Kobuski"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025720-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13796144
title: Applications of Fast Iterative Filtering in NMR spectroscopy [NMR DATASETS]

description: Employed NMR spectra for the application of denoising and baseline correction method described in the manuscript.
DOI: 10.5281/zenodo.13796145
title: Applications of Fast Iterative Filtering in NMR spectroscopy [NMR DATASETS]

description: Employed NMR spectra for the application of denoising and baseline correction method described in the manuscript.
DOI: 10.6084/m9.figshare.27020290
title: <b>Highly Efficient </b><b>Construction of Monkey </b><b>Blastoid Capsules from Aged Somatic Cells</b>

description: This study reports the highly efficient generation of blastoids from induced pluripotent stem cells (iPSCs) and somatic cell nuclear transfer ESCs (nt-ESCs) obtained from aged monkeys.
DOI: 10.6084/m9.figshare.27020290.v1
title: <b>Highly Efficient </b><b>Construction of Monkey </b><b>Blastoid Capsules from Aged Somatic Cells</b>

description: This study reports the highly efficient generation of blastoids from induced pluripotent stem cells (iPSCs) and somatic cell nuclear transfer ESCs (nt-ESCs) obtained from aged monkeys.