cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-z8b-ub7y
title: PAN-00027913 - coin/coin-related, (maker : anoniem), (rekenpenning)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00027913&lt;/p&gt;
description: Modified: 2021-09-07T11:57:16+02:00
DOI: 10.3535/5wr-6eh-6kw
title: Lasiocampidae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2aq-6l0-82a
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ewv-vx5-ya2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-z8b-uz4b
title: Vindplaats 6: Belegeringswerk. Archeologisch proefsleuvenonderzoek project Ruimte voor de Rivier, Gemeente Deventer

description: &lt;p&gt;Onderzoeksrapport&lt;/p&gt;
description: Date: 2009-08-24 (veldwerk)
DOI: 10.3535/s7s-plt-k92
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r9n-xd0-lqb
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/455-1yw-p9n
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pmz-qvd-y90
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f4h-eyt-fwm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l1z-jxa-936
title: Lepidoptera Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.rdtkng
title: Occurrence Download

description: A dataset listing the 127595 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GbifRegion is Latin America and the Caribbean",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 127595 records were derived from 1343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092649-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17465787
title: Data for the paper  ''Superradiant and Subradiant States: Advancements in Precision Measurement Applications''
DOI: 10.5281/zenodo.17465786
title: Data for the paper  ''Superradiant and Subradiant States: Advancements in Precision Measurement Applications''
DOI: 10.15468/dl.4xw23n
title: Occurrence Download

description: A dataset containing 368 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Harrisia pomanensis"
 ]
}

 The dataset includes 368 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004770-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qb93yc
title: Occurrence Download

description: A dataset containing 34390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus rubra",
 "HasCoordinate is true",
 "Country is Netherlands"
 ]
}

 The dataset includes 34390 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005231-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mu388k
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus rubra",
 "HasCoordinate is true",
 "Country is Luxembourg"
 ]
}

 The dataset includes 159 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005233-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28730888
title: Multicentric PMEX study data

description: The research was conducted to validate the PMEX questionnaire in Indian scenario for undergraduate students
DOI: 10.5281/zenodo.11194298
title: Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants

description: Data from manuscript "Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE) and concatenated matrices, input and output of phylogenetic analyses, custom scripts used.
DOI: 10.5281/zenodo.11194299
title: New phylogeny of the ants

description: Data from manuscript "New phylogeny of the ants". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE) and concatenated matrices, input and output of phylogenetic analyses, custom scripts used.
DOI: 10.5281/zenodo.12173604
title: Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants

description: Data from manuscript "Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE) and concatenated matrices, input and output of phylogenetic analyses, custom scripts used.
DOI: 10.5281/zenodo.14010350
title: Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants

description: Data from manuscript "Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE) and concatenated matrices, input and output of phylogenetic analyses, custom scripts used.
DOI: 10.5281/zenodo.14338504
title: Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants

description: Data from manuscript "Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE) and concatenated matrices, input and output of phylogenetic analyses, custom scripts used.
DOI: 10.5281/zenodo.14503635
title: Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants

description: Data from manuscript "Evaluating UCE data adequacy and integrating uncertainty in a comprehensive phylogeny of ants". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE) and concatenated matrices, input and output of phylogenetic analyses, custom scripts used.
DOI: 10.15468/dl.e6c8eu
title: Occurrence Download

description: A dataset containing 359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Anser erythropus (Linnaeus, 1758)",
 "Year 2010-2024"
 ]
}

 The dataset includes 359 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037857-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629084_d4.v1
title: Additional file 4: of Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

description: Enriched KEGG pathways and corresponding murine differentially expressed genes. (XLS 228Â kb)
DOI: 10.17863/cam.87958
title: Datasets for Diffraction Between the Spots: Scanning Electron Diffraction of Beam-sensitive Disordered Materials

description: Datasets and workbooks for the PhD Thesis of Joonatan E M Laulainen: Diffraction Between the Spots: Scanning Electron Diffraction of Beam-sensitive Disordered Materials. Detail of how data analysis can be repeated is contained within notebooks within the zip files, which are divided by project. The folders are related to chapters within my thesis (that is itself in a separate repository). Raw data files are included where appropriate. Videos of a few figures are also provided.
DOI: 10.6084/m9.figshare.c.3629084_d5.v1
title: Additional file 7: of Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

description: Enriched GO categories and corresponding L. major differentially expressed genes. (XLS 178Â kb)
DOI: 10.6084/m9.figshare.c.3629099_d5.v1
title: Additional file 6: of A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle

description: Haplotype analysis in Braunvieh, Fleckvieh and Holstein cattle. The BH2 and BH2FV haplotypes were detected using 777Â K and 50Â K genotyping data, respectively. Yellow and red color highlights eight common SNPs in Braunvieh and Fleckvieh cattle and the missense variant in TUBD1, respectively. Note that the BH2 haplotype version in Holstein cattle does not contain the rs383232842 C-allele. (XLSX 62Â kb)
DOI: 10.6084/m9.figshare.c.3629084_d6.v1
title: Additional file 3: of Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

description: Differentially expressed gene lists for uninfected vs. L. major -infected murine macrophages within and across time using limma. (XLS 2631Â kb)
DOI: 10.17863/cam.7565
title: Research data supporting "The effect of underlayers on the reversal of perpendicurlarly magnetized multilayer thin films for magnetic micro- and nanoparticles"

description: This dataset is magnetometry data related to the publication.
DOI: 10.15468/dl.ajbpqy
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Nigeria, India)",
 "Month is January",
 "OccurrenceStatus is Present",
 "TaxonKey is Falco naumanni J.G.Fleischer, 1818"
 ]
}

 The dataset includes 287 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037858-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629084_d7.v1
title: Additional file 5: of Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

description: Comparison of differentially expressed murine gene lists with published literature. (XLS 267Â kb)
DOI: 10.6084/m9.figshare.c.3629099_d7.v1
title: Additional file 5: of A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle

description: Genotype distribution of three variants in LD with BH2. (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3629129_d1.v1
title: Additional file 1: of Scrapie incidence and PRNP polymorphisms: rare small ruminant breeds of Sicily with TSE protecting genetic reservoirs

description: Total number of analysed animals for each Sicilian sheep breed with allele frequencies and percentages. (XLS 56Â kb)
DOI: 10.17863/cam.20842
title: 8q24 COGS fine mapping data

description: Genotype and phenotype data related to Ovarian Cancer Association Consortium COGS project
DOI: 10.17863/cam.69854
title: Research data supporting 'Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy'

description: This file is part of the supporting data for the manuscript 'Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy', and contains scripts and code for running all-atom and coarse-grained simulations of proteins described in the manuscript. The included README file outlines the structure of the archive and contains Lammps installation instructions for running the remaining code supplied. There are five directories in this archive. Four of these correspond to figures in the results section of the manuscript, and each one contains a separate README file detailing its contents. They include Gromacs and Lammps scripts with example simulation set-ups to run simulations corresponding to figures 2 [potentials of mean force of all-atom models], 4 [radius of gyration simulations of coarse-grained models], 5 [direct-coexistence simulations used to determine the phase diagrams] and 6 [multiphase equilibria] of the manuscript. The directories contain input scripts and corresponding parameter and simulation configuration files, as well as example simulation output to benchmark against. The final directory, 'all-model-parameters', contains Lammps parameter files not only for the Mpipi potential, but also for all the other models we have benchmarked in the paper. These parameter files can be used instead of the Mpipi parameters in the simulations provided in the other directories.
DOI: 10.15468/dl.ug34sw
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-74.27772 11.01945,-74.19697 11.07777,-74.25978 11.18993,-74.37194 11.12712,-74.27772 11.01945))",
 "StateProvince is one of (magdalena)",
 "TaxonKey is one of (Chlorophyta)"
 ]
 }
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037859-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629153_d4.v1
title: Additional file 2 of FlexFlux: combining metabolic flux and regulatory network analyses

description: Reconstructed regulatory network of E. coli containing catabolite repression of lactose and maltose in the SBML-qual format. (TXT 35 kb)
DOI: 10.6084/m9.figshare.c.3629153_d5.v1
title: Additional file 3 of FlexFlux: combining metabolic flux and regulatory network analyses

description: Constraint file used to run FlexFlux simulations of the lactose operon. (TXT 484 bytes)
DOI: 10.6084/m9.figshare.c.3629150_d5.v1
title: Additional file 5 of Functional networks inference from rule-based machine learning models

description: Enrichment Score. Complete list of Enrichment Score values for each dataset and network. (XZ 4 kb)
DOI: 10.6084/m9.figshare.c.3629177_d1.v1
title: Additional file 3: of Transcriptome sequencing, annotation and polymorphism detection in the hop bush, Dodonaea viscosa

description: Gene Ontology terms assigned to the contigs with significant BLAST hits to plant genes,listed under the categories 'biological processes', 'cellular components', and 'molecular functions'. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3629177_d2.v1
title: Additional file 1: of Transcriptome sequencing, annotation and polymorphism detection in the hop bush, Dodonaea viscosa

description: Lists of contigs with significant BLAST hits (e-value &lt; 1e-5) to abscisic acid andaquaporin related genes. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.c.3629177_d3.v1
title: Additional file 2: of Transcriptome sequencing, annotation and polymorphism detection in the hop bush, Dodonaea viscosa

description: Output from KEGG analysis of contigs, listing identified pathways that gene products areinvolved in. (XLSX 120Â kb)
DOI: 10.6084/m9.figshare.c.3629183_d2.v1
title: Additional file 1: Table S1. of Nano-risk Science: application of toxicogenomics in an adverse outcome pathway framework for risk assessment of multi-walled carbon nanotubes

description: Particle physicochemical properties and exposure information. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3629180_d2.v1
title: Additional file 6 of Meta-analytic estimation of measurement variability and assessment of its impact on decision-making: the case of perioperative haemoglobin concentration monitoring

description: noweb (knitr) source of this paper. Includes data, R and Stan code, bibliographic database. (RNW 182 kb)
DOI: 10.6084/m9.figshare.c.3629180_d3.v1
title: Additional file 2 of Meta-analytic estimation of measurement variability and assessment of its impact on decision-making: the case of perioperative haemoglobin concentration monitoring

description: (Unix) text file: how to reproduce this paper (incl.software requirements). (TXT 1.70 kb)
DOI: 10.6084/m9.figshare.c.3629183_d3.v1
title: Additional file 2: Table S2. of Nano-risk Science: application of toxicogenomics in an adverse outcome pathway framework for risk assessment of multi-walled carbon nanotubes

description: List of all significant pathways associated with the molecular initiating event (MIE), each key event (KE), and each associative event (AE) including the benchmark dose (BMD) value (BMDL values included in parentheses) for each MWCNT investigated at each time-point. n.a. indicates the BMD(L) could not be calculated due to poor model fit. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3629180_d5.v1
title: Additional file 1 of Meta-analytic estimation of measurement variability and assessment of its impact on decision-making: the case of perioperative haemoglobin concentration monitoring

description: Stan implementation of the meta-analytic model. (STAN 7.66 kb)
DOI: 10.6084/m9.figshare.c.3629243_d1.v1
title: MOESM1 of Simple SNP-based minimal marker genotyping for Humulus lupulus L. identification and variety validation

description: Additional file 1. Supplementary data file consisting of the hapmap flat file of the 32,206 SNP markers used to identify the minimal set of seven SNP markers
DOI: 10.6084/m9.figshare.c.3629246_d1.v1
title: Additional file 2: Table S1. of Transposable element detection from whole genome sequence data

description: List of known or predicted germline insertions derived from several publications. (BED 1239 kb)
DOI: 10.6084/m9.figshare.c.3629255_d1.v1
title: Additional file 1: Dataset S1. of The intracellular bacterium Anaplasma phagocytophilum selectively manipulates the levels of vertebrate host proteins in the tick vector Ixodes scapularis

description: Digestion of sheep host hemoglobin in tick midguts and salivary glands. (XLS 55 kb)
DOI: 10.6084/m9.figshare.c.3629258_d1.v1
title: Additional file 5: Table S10. of Eligibility of real-life patients with COPD for inclusion in trials of inhaled long-acting bronchodilator therapy

description: Overview of inclusion and exclusion criteria of RCTs testing combined treatments. (XLSX 16Â kb)
DOI: 10.17863/cam.7448
title: Numerical verification of Beilinson's conjecture on Fermat quotients

description: As described in my PhD thesis K-Theory of Fermat Curves I give PARI/GP scripts and programs written in C that numerically verify Beilinson's conjecture on certain quotients of Fermat curves.
DOI: 10.6084/m9.figshare.c.3629252_d2.v1
title: Additional file 3 of Pooling across cells to normalize single-cell RNA sequencing data with many zero counts

description: Enriched GO terms for library size normalization. This file is in a tab-separated format and contains the top 200 GO terms that were enriched in the set of DE genes unique to library size normalization. The fields are the same as described for Additional file 2. (13 KB PDF)
DOI: 10.6084/m9.figshare.c.3629255_d3.v1
title: Additional file 3: Dataset S2. of The intracellular bacterium Anaplasma phagocytophilum selectively manipulates the levels of vertebrate host proteins in the tick vector Ixodes scapularis

description: Proteomics results for sheep host proteins in tick tissues. (XLSX 208 kb)
DOI: 10.17863/cam.75215
title: Research data supporting "Energetics of lipid transport by the ABC transporter MsbA is lipid dependent"

description: The ABC multidrug exporter MsbA mediates the translocation of lipopolysaccharides and phospholipids across the plasma membrane in Gram-negative bacteria. Although MsbA is structurally well characterised, the energetic requirements of lipid transport remain unknown. Here, we report that, similar to the transport of small-molecule antibiotics and cytotoxic agents, the flopping of physiologically relevant long-acyl-chain 1,2-dioleoyl (C18)-phosphatidylethanolamine in proteoliposomes requires the simultaneous input of ATP binding and hydrolysis and the chemical proton gradient as sources of metabolic energy. In contrast, the flopping of the large hexa-acylated (C12-C14) Lipid-A anchor of lipopolysaccharides is only ATP dependent. This study demonstrates that the energetics of lipid transport by MsbA is lipid dependent. As our mutational analyses indicate lipid and drug transport via the central binding chamber in MsbA, the lipid availability in the membrane can affect the drug transport activity and vice versa. The research data in this dataset record support a manuscript Guo et al. accepted for publication by Communications Biology and refer to the figures that are incorporated in the paper, and the msbA gene and amino acid sequences under study. Descriptions of the experimental details and statistical analyses are included in the Materials and Methods and figure legends of the paper.
DOI: 10.6084/m9.figshare.c.3629297_d3.v1
title: Additional file 9: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: Sampling information and GenBank accession numbers of the six Acanthus species and the outgroup Avicennia marina used in this study. The sequences of the three nuclear genes of Av. marina were obtained from the unpublished genomic data set of Av. marina and were not deposited in Genbank. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629297_d4.v1
title: Additional file 3: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: Pairwise Kimura two-parameter distances of nrITS for the six Acanthus species. The abbreviations were listed in Additional file 9. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629297_d5.v1
title: Additional file 5: of Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones

description: List of the 13 pairs of orthologs between Acanthus ilicifolius and A. leucostachyus with Ka/Ks ratios significantly larger than 1. â   indicates that the orthologs cannot find their orthologous genes in Arabidopsis. (XLSX 10Â kb)
DOI: 10.25810/gyv-zg57.80
title: North American Newspaper Coverage of Climate Change or Global Warming, 2000-2024 - November 2024

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.15468/dl.3ce8nz
title: Occurrence Download

description: A dataset containing 875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHE",
 "OccurrenceStatus is Present",
 "TaxonKey is Psilocybe (Fr.) P.Kumm."
 ]
}

 The dataset includes 875 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037861-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629339_d3.v1
title: Additional file 1: Table S1. of Midgut proteome of an argasid tick, Ornithodoros erraticus: a comparison between unfed and engorged females

description: Non-redundant tick proteins identified in the midgut of unfed ticks. (XLSX 78 kb)