cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5819317
title: K-Nearest-Neighbor algorithm to predict the survival time and classification of various stages of Oral Cancer: A machine learning approach

description: This project predicts the survival time of a cancer patient in terms of the number of days and also classifies the dataset into various stages of cancer This is executed on the SPYDER platform using Python 3.7 on Anaconda Navigator. The dataset includes the oral cancer patient's record of 4 countries
DOI: 10.5281/zenodo.5806890
title: K-Nearest-Neighbor algorithm to predict the survival time and classification of various stages of Oral Cancer: A machine learning approach

description: This project predicts the survival time of a cancer patient in terms of the number of days and also classifies the dataset into various stages of cancer This is executed on the SPYDER platform using Python 3.7 on Anaconda Navigator. The dataset includes the oral cancer patient's record of 4 countries
DOI: 10.6084/m9.figshare.17869616
title: Seurat object for the spatial transcriptomic data of sample HCM1406C

description: Seurat object for the spatial transcriptomic data of sample HCM1406C
DOI: 10.6084/m9.figshare.17869893.v1
title: Additional file 2 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 2: Table S1. Differentially expressed genes between timepoints in boa constrictor small intestine after feeding (p 1.5).
DOI: 10.6084/m9.figshare.17869893
title: Additional file 2 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 2: Table S1. Differentially expressed genes between timepoints in boa constrictor small intestine after feeding (p 1.5).
DOI: 10.6084/m9.figshare.17869896
title: Additional file 3 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 3: Table S3. Target molecules of NFE2L2 and their directional changes in the RNAseq dataset from fasted vs. 12hrpf.
DOI: 10.6084/m9.figshare.17869896.v1
title: Additional file 3 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 3: Table S3. Target molecules of NFE2L2 and their directional changes in the RNAseq dataset from fasted vs. 12hrpf.
DOI: 10.6084/m9.figshare.17869902
title: Additional file 5 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 5: Table S5. Number of reads per sample in multiple species analysis.
DOI: 10.6084/m9.figshare.17869902.v1
title: Additional file 5 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 5: Table S5. Number of reads per sample in multiple species analysis.
DOI: 10.6084/m9.figshare.17869905.v1
title: Additional file 6 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 6: Table S4. Description of snakes sampled for analyses.
DOI: 10.6084/m9.figshare.17869899
title: Additional file 4 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 4: Table S2. Target molecules of XBP1 and their directional changes in the RNAseq dataset from fasted vs. 12hrpf.
DOI: 10.6084/m9.figshare.17869905
title: Additional file 6 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 6: Table S4. Description of snakes sampled for analyses.
DOI: 10.6084/m9.figshare.17869899.v1
title: Additional file 4 of Identification of an integrated stress and growth response signaling switch that directs vertebrate intestinal regeneration

description: Additional file 4: Table S2. Target molecules of XBP1 and their directional changes in the RNAseq dataset from fasted vs. 12hrpf.
DOI: 10.6084/m9.figshare.17869912
title: Additional file 2 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 2: Symptoms patients want addressed.
DOI: 10.6084/m9.figshare.17869912.v1
title: Additional file 2 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 2: Symptoms patients want addressed.
DOI: 10.6084/m9.figshare.17869915
title: Additional file 3 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 3: Reasons for trial participation.
DOI: 10.6084/m9.figshare.17869915.v1
title: Additional file 3 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 3: Reasons for trial participation.
DOI: 10.6084/m9.figshare.17869918.v1
title: Additional file 4 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 4: Barriers to trial participation.
DOI: 10.6084/m9.figshare.17869918
title: Additional file 4 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 4: Barriers to trial participation.
DOI: 10.6084/m9.figshare.17869921
title: Additional file 5 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 5: Level of evidence.
DOI: 10.6084/m9.figshare.17869921.v1
title: Additional file 5 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 5: Level of evidence.
DOI: 10.6084/m9.figshare.17869924
title: Additional file 6 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 6: Lumbar puncture frequency.
DOI: 10.6084/m9.figshare.17869924.v1
title: Additional file 6 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 6: Lumbar puncture frequency.
DOI: 10.6084/m9.figshare.17869927
title: Additional file 7 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 7: Trial design.
DOI: 10.6084/m9.figshare.17869927.v1
title: Additional file 7 of The attitude of patients with progressive ataxias towards clinical trials

description: Additional file 7: Trial design.
DOI: 10.6084/m9.figshare.17869859
title: Seurat object for the spatial transcriptomic data of sample HCM1267D

description: Seurat object for the spatial transcriptomic data of sample HCM1267D
DOI: 10.6084/m9.figshare.17870026
title: Additional file 3 of Association of genetic variants of oxidative stress responsive kinase 1 (OXSR1) with asthma exacerbations in non-smoking asthmatics

description: Additional file 3. Genomic raw data.
DOI: 10.6084/m9.figshare.17870026.v1
title: Additional file 3 of Association of genetic variants of oxidative stress responsive kinase 1 (OXSR1) with asthma exacerbations in non-smoking asthmatics

description: Additional file 3. Genomic raw data.
DOI: 10.6084/m9.figshare.17870032
title: Additional file 1 of Plasmodium falciparum histidine rich protein 2 (pfhrp2): an additional genetic marker suitable for anti-malarial drug efficacy trials

description: Additional file 1. Description and classification of the pfhrp2 allelic variants classification and their frequencies.
DOI: 10.6084/m9.figshare.17870032.v1
title: Additional file 1 of Plasmodium falciparum histidine rich protein 2 (pfhrp2): an additional genetic marker suitable for anti-malarial drug efficacy trials

description: Additional file 1. Description and classification of the pfhrp2 allelic variants classification and their frequencies.
DOI: 10.6084/m9.figshare.17870035
title: Additional file 1 of Telerehabilitation of acute musculoskeletal multi-disorders: prospective, single-arm, interventional study

description: Additional file 1. Acute dataset.
DOI: 10.6084/m9.figshare.17870035.v1
title: Additional file 1 of Telerehabilitation of acute musculoskeletal multi-disorders: prospective, single-arm, interventional study

description: Additional file 1. Acute dataset.
DOI: 10.6084/m9.figshare.17870077
title: Additional file 2 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 2.
DOI: 10.6084/m9.figshare.17870077.v1
title: Additional file 2 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 2.
DOI: 10.6084/m9.figshare.17870080
title: Additional file 3 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 3.
DOI: 10.6084/m9.figshare.17870080.v1
title: Additional file 3 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 3.
DOI: 10.6084/m9.figshare.17870083
title: Additional file 4 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 4.
DOI: 10.6084/m9.figshare.17870083.v1
title: Additional file 4 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 4.
DOI: 10.6084/m9.figshare.17870086
title: Additional file 5 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 5.
DOI: 10.6084/m9.figshare.17870086.v1
title: Additional file 5 of Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

description: Additional file 5.
DOI: 10.6084/m9.figshare.17870110
title: Additional file 1 of Genomic characteristics and comparative genomics of Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16 isolated from chicken feces

description: Additional file 1: Table S1. Summary in genome features of 45 Schwarzengrund. Table S2. Summary in IS-element and transposon in the S. Schwarzengrund strain S16. Table S3. Unique gene information of S. Schwarzengrund strain S16 obtained by pangenome analysis. Table S4. Genomic islands specific to strain S16. Table S5. List of unique genes present on the genomic islands. Table S6. Putative virulence genes in 46 S. Schwarzengrund genomes predicted by VFDB.
DOI: 10.6084/m9.figshare.17870103
title: Additional file 1 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 1.
DOI: 10.6084/m9.figshare.17870110.v1
title: Additional file 1 of Genomic characteristics and comparative genomics of Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16 isolated from chicken feces

description: Additional file 1: Table S1. Summary in genome features of 45 Schwarzengrund. Table S2. Summary in IS-element and transposon in the S. Schwarzengrund strain S16. Table S3. Unique gene information of S. Schwarzengrund strain S16 obtained by pangenome analysis. Table S4. Genomic islands specific to strain S16. Table S5. List of unique genes present on the genomic islands. Table S6. Putative virulence genes in 46 S. Schwarzengrund genomes predicted by VFDB.
DOI: 10.6084/m9.figshare.17870103.v1
title: Additional file 1 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 1.
DOI: 10.6084/m9.figshare.17870106
title: Additional file 2 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 2.
DOI: 10.6084/m9.figshare.17870106.v1
title: Additional file 2 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 2.
DOI: 10.6084/m9.figshare.17870109
title: Additional file 3 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 3.
DOI: 10.6084/m9.figshare.17870109.v1
title: Additional file 3 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 3.
DOI: 10.6084/m9.figshare.17870112.v1
title: Additional file 4 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 4.
DOI: 10.6084/m9.figshare.17870115
title: Additional file 5 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 5.
DOI: 10.6084/m9.figshare.17870112
title: Additional file 4 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 4.
DOI: 10.6084/m9.figshare.17870115.v1
title: Additional file 5 of Gene expression profiling of trout muscle during flesh quality recovery following spawning

description: Additional file 5.
DOI: 10.6084/m9.figshare.17870119
title: Additional file 1 of Intermittent administration of peracetic acid is a mild environmental stressor that elicits mucosal and systemic adaptive responses from Atlantic salmon post-smolts

description: Additional file 1. Summary of welfare scores.
DOI: 10.6084/m9.figshare.17870119.v1
title: Additional file 1 of Intermittent administration of peracetic acid is a mild environmental stressor that elicits mucosal and systemic adaptive responses from Atlantic salmon post-smolts

description: Additional file 1. Summary of welfare scores.
DOI: 10.6084/m9.figshare.17870121
title: Additional file 1 of Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm

description: Additional file 1: Table 1. List of EgHMs in oil palm genome.
DOI: 10.6084/m9.figshare.17870121.v1
title: Additional file 1 of Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm

description: Additional file 1: Table 1. List of EgHMs in oil palm genome.
DOI: 10.6084/m9.figshare.17870124
title: Additional file 2 of Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm

description: Additional file 2: Table 2. Subcellular localaization prediction of 109 EgHM gene family.
DOI: 10.6084/m9.figshare.17870124.v1
title: Additional file 2 of Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm

description: Additional file 2: Table 2. Subcellular localaization prediction of 109 EgHM gene family.
DOI: 10.6084/m9.figshare.17870127
title: Additional file 3 of Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm

description: Additional file 3: Table 3. List of qRT-PCR primer pairs used for realtive expression of EgHM gene family members in oil palm during somatic embryogenesis.
DOI: 10.6084/m9.figshare.17870127.v1
title: Additional file 3 of Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm

description: Additional file 3: Table 3. List of qRT-PCR primer pairs used for realtive expression of EgHM gene family members in oil palm during somatic embryogenesis.
DOI: 10.6084/m9.figshare.17870143
title: Additional file 4 of Health risks and mitigation strategies from occupational exposure to wildland fire: a scoping review

description: Additional file 4. Complete data extraction of included articles
DOI: 10.6084/m9.figshare.17870143.v1
title: Additional file 4 of Health risks and mitigation strategies from occupational exposure to wildland fire: a scoping review

description: Additional file 4. Complete data extraction of included articles
DOI: 10.6084/m9.figshare.17870278
title: Additional file 2 of High throughput phenotyping of cross-sectional morphology to assess stalk lodging resistance

description: Additional file 2. Matlab code.
DOI: 10.6084/m9.figshare.17870278.v1
title: Additional file 2 of High throughput phenotyping of cross-sectional morphology to assess stalk lodging resistance

description: Additional file 2. Matlab code.
DOI: 10.6084/m9.figshare.17870281
title: Additional file 3 of High throughput phenotyping of cross-sectional morphology to assess stalk lodging resistance

description: Additional file 3. Instructions for Matlab code and sample images.
DOI: 10.6084/m9.figshare.17870281.v1
title: Additional file 3 of High throughput phenotyping of cross-sectional morphology to assess stalk lodging resistance

description: Additional file 3. Instructions for Matlab code and sample images.
DOI: 10.6084/m9.figshare.17870299
title: Additional file 1 of Changes in the gut bacterial communities in colon cancer surgery patients: an observational study

description: Additional file 1: Table S1. Heat map showing only bacterial taxa where significant changes in relative abundance were present in at least one of the pairwise comparisons.
DOI: 10.6084/m9.figshare.17870299.v1
title: Additional file 1 of Changes in the gut bacterial communities in colon cancer surgery patients: an observational study

description: Additional file 1: Table S1. Heat map showing only bacterial taxa where significant changes in relative abundance were present in at least one of the pairwise comparisons.
DOI: 10.6084/m9.figshare.17870430
title: Additional file 1 of The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group

description: Additional file 1: Table S1. Amino acid substitutions detected in 2017 DENV1 viruses. Substitutions are indicated on the location of DENV1 standard strain EU848545.
DOI: 10.6084/m9.figshare.17870430.v1
title: Additional file 1 of The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group

description: Additional file 1: Table S1. Amino acid substitutions detected in 2017 DENV1 viruses. Substitutions are indicated on the location of DENV1 standard strain EU848545.
DOI: 10.6084/m9.figshare.17870433
title: Additional file 2 of The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group

description: Additional file 2: Table S2. List of sequence data used for phylogenetic analysis. The accession numbers of the 28 newly sequenced DENV1 are also provided in the Table.
DOI: 10.6084/m9.figshare.17870433.v1
title: Additional file 2 of The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group

description: Additional file 2: Table S2. List of sequence data used for phylogenetic analysis. The accession numbers of the 28 newly sequenced DENV1 are also provided in the Table.
DOI: 10.6084/m9.figshare.17870436
title: Additional file 3 of The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group

description: Additional file 3: Table S3. The results of IgG and IgM detection by ELISA kit.
DOI: 10.6084/m9.figshare.17870436.v1
title: Additional file 3 of The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group

description: Additional file 3: Table S3. The results of IgG and IgM detection by ELISA kit.
DOI: 10.6084/m9.figshare.17870467.v1
title: Additional file 6 of The genomic structure of isolation across breed, country and strain for important South African and Australian sheep populations

description: Additional file 6: Table S1 Mean relatedness across breed groups according to the genomic relationship matrix (G). Estimates in bold are the internal relatedness for a breed group calculated without the diagonal of (G).
DOI: 10.6084/m9.figshare.17870470
title: Additional file 7 of The genomic structure of isolation across breed, country and strain for important South African and Australian sheep populations

description: Additional file 7: Table S2 Mean relatedness across Merino bloodline groups according to the subset genomic relationship matrix (GM). Estimates in bold are the internal relatedness for a bloodline group calculated without the diagonal of (GM).
DOI: 10.6084/m9.figshare.17870470.v1
title: Additional file 7 of The genomic structure of isolation across breed, country and strain for important South African and Australian sheep populations

description: Additional file 7: Table S2 Mean relatedness across Merino bloodline groups according to the subset genomic relationship matrix (GM). Estimates in bold are the internal relatedness for a bloodline group calculated without the diagonal of (GM).
DOI: 10.6084/m9.figshare.17870467
title: Additional file 6 of The genomic structure of isolation across breed, country and strain for important South African and Australian sheep populations

description: Additional file 6: Table S1 Mean relatedness across breed groups according to the genomic relationship matrix (G). Estimates in bold are the internal relatedness for a breed group calculated without the diagonal of (G).
DOI: 10.6084/m9.figshare.17870487
title: Additional file 1 of Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

description: Additional file 1: Figure S1. Phylogenetic tree of selected species and MLST subtype distributions. a) Phylogenetic tree constructed for representative genomes of each species using PATRIC’s Codon Tree service. Genomes are labeled by their name and PATRIC Genome ID. b) Distribution of MLST subtypes for each species’ genome collection. The relative abundance of the top 5 MLST subtypes, all other subtypes, and untyped genomes are shown per species. Figure S2. Evaluation of accuracy of Heaps’ Law at predicting pangenome size, with or without controlling from MLST. a) Example fit of Heaps’ Law to first half of genomes (unbalanced) or MLSTs (MLST balanced) and extrapolation to second half to evaluate pangenome size projection. b-c) Median mean absolute error (MAE) across Heaps’ Law fits for 100 random genome orderings, with or without MLST balancing, for each species in the fitting and extrapolation regions. Dotted lines indicate equal performance between the two methods. Figure S3. Gene frequency distributions by species. Figure S4. Fitted cumulative gene frequency distributions and corresponding core and unique gene frequency thresholds, by species. Observed distributions (solid blue), fitted functions (dashed orange), and the R2 and mean absolute errors (MAE) of the fits are shown. Fitted inflection points (black dot, dashed gray) and frequency thresholds corresponding to core and unique genes (dashed black) are also shown. Figure S5. COG functional group enrichment in the core, accessory, and unique genomes of 12 species. Heatmaps are colored by the log2 odds ratio (LOR) between each COG and the a) core, b) accessory, c) unique genome of each species. COGs are sorted by mean LOR across all species. LOR color scales are symmetric and identical for all plots; four values are outside of the color range: F x E. cloacae (LOR = − 7.5), Q x C. coli (LOR = − 6.0), and K x C. coli (LOR = − 6.9) for accessory genomes; F x E. faecium (LOR = − 5.3) for unique genomes. Starred cells correspond to statistically significant enrichments under Fisher’s Exact test with FWER
DOI: 10.6084/m9.figshare.17870532
title: Additional file 1 of Expression of immune response genes in human corneal epithelial cells interacting with Aspergillus flavus conidia

description: Additional file 1: Table S1. RNA transcript data for 595 genes profiled using NanoString’s Immunological Panel for RCB2280 cells infected with clinical isolates of A. flavus.