cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11953734.v1
title: all Dromar hmm file

description: All Dromar hmmer files were merged to a single file to use for nhmmer.
DOI: 10.6084/m9.figshare.11953737
title: matlab files updated from Beyond non-backtracking: non-cycling network centrality measures

description: Walks around a graph are studied in a wide range of fields, from graph theory and stochastic analysis to theoretical computer science and physics. In many cases it is of interest to focus on non-backtracking walks; those that do not immediately revisit their previous location. In the network science context, imposing a non-backtracking constraint on traditional walk-based node centrality measures is known to offer tangible benefits. Here, we use the Hashimoto matrix construction to characterize, generalize and study such non-backtracking centrality measures. We then devise a recursive extension that systematically removes triangles, squares and, generally, all cycles up to a given length. By characterizing the spectral radius of appropriate matrix power series, we explore how the universality results on the limiting behaviour of classical walk-based centrality measures extend to these non-cycling cases. We also demonstrate that the new recursive construction gives rise to practical centrality measures that can be applied to large-scale networks.
DOI: 10.6084/m9.figshare.11953740.v1
title: Supplementary Summary from Beyond non-backtracking: non-cycling network centrality measures

description: Walks around a graph are studied in a wide range of fields, from graph theory and stochastic analysis to theoretical computer science and physics. In many cases it is of interest to focus on non-backtracking walks; those that do not immediately revisit their previous location. In the network science context, imposing a non-backtracking constraint on traditional walk-based node centrality measures is known to offer tangible benefits. Here, we use the Hashimoto matrix construction to characterize, generalize and study such non-backtracking centrality measures. We then devise a recursive extension that systematically removes triangles, squares and, generally, all cycles up to a given length. By characterizing the spectral radius of appropriate matrix power series, we explore how the universality results on the limiting behaviour of classical walk-based centrality measures extend to these non-cycling cases. We also demonstrate that the new recursive construction gives rise to practical centrality measures that can be applied to large-scale networks.
DOI: 10.6084/m9.figshare.11953737.v1
title: matlab files updated from Beyond non-backtracking: non-cycling network centrality measures

description: Walks around a graph are studied in a wide range of fields, from graph theory and stochastic analysis to theoretical computer science and physics. In many cases it is of interest to focus on non-backtracking walks; those that do not immediately revisit their previous location. In the network science context, imposing a non-backtracking constraint on traditional walk-based node centrality measures is known to offer tangible benefits. Here, we use the Hashimoto matrix construction to characterize, generalize and study such non-backtracking centrality measures. We then devise a recursive extension that systematically removes triangles, squares and, generally, all cycles up to a given length. By characterizing the spectral radius of appropriate matrix power series, we explore how the universality results on the limiting behaviour of classical walk-based centrality measures extend to these non-cycling cases. We also demonstrate that the new recursive construction gives rise to practical centrality measures that can be applied to large-scale networks.
DOI: 10.6084/m9.figshare.11953704
title: List of tools, databases and software used in this study.

description: List of tools, databases and software used in this study.
DOI: 10.6084/m9.figshare.11953701
title: The conservation analysis of antigenic proteins C6, TF, F13B, ALB and F2 signifies high similarity with the HLA-A*01:01 of MHC class-I molecule. The conserved analysis was performed using Immune Epitope Database (IEDB) to observe the broad coverage of these epitopes.

description: antigenic proteins C6, TF, F13B, ALB and F2
DOI: 10.6084/m9.figshare.11953689
title: List of liver specific cancer proteins

description: List of liver specific cancer proteins
DOI: 10.6084/m9.figshare.11953689.v1
title: List of liver specific cancer proteins

description: List of liver specific cancer proteins
DOI: 10.6084/m9.figshare.11953674.v1
title: Osteoclast_eQTL_results_colocalised_genes.xlsx

description: This dataset contains osteoclast-specific expression quantitative trait locus (eQTL) data for genetic loci demonstrating co-localisation with osteoporosis genome-wide association study (GWAS) association signals. The results were generated from a study of 158 osteoclast cell cultures (PMID 29473973, 30705363). The data is provided in a single .xlsx file.
DOI: 10.6084/m9.figshare.11953512
title: TMT-IRIS raw science frame subarray

description: Simulation of a small subarray for image
DOI: 10.6084/m9.figshare.11953512.v1
title: TMT-IRIS raw science frame subarray

description: Simulation of a small subarray for image
DOI: 10.6084/m9.figshare.11953287
title: Additional file 5 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 5: Table S5. Overview of homoplasic mutations.
DOI: 10.6084/m9.figshare.11953287.v1
title: Additional file 5 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 5: Table S5. Overview of homoplasic mutations.
DOI: 10.6084/m9.figshare.11953278
title: Additional file 4 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 4: Table S4. MIC results for isolates with ndh R268H, ethA M1R, ethA S266R, ethA G413D, or Rv1979c V52G mutations, or a Rv1978-Rv1979c deletion.
DOI: 10.6084/m9.figshare.11953278.v1
title: Additional file 4 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 4: Table S4. MIC results for isolates with ndh R268H, ethA M1R, ethA S266R, ethA G413D, or Rv1979c V52G mutations, or a Rv1978-Rv1979c deletion.
DOI: 10.6084/m9.figshare.11953269
title: Additional file 3 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 3: Table S3. Catalogue of 547 phylogenetically informative mutations in 92 genes implicated in drug resistance to 21 anti-TB drugs.
DOI: 10.6084/m9.figshare.11953269.v1
title: Additional file 3 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 3: Table S3. Catalogue of 547 phylogenetically informative mutations in 92 genes implicated in drug resistance to 21 anti-TB drugs.
DOI: 10.6084/m9.figshare.11953254
title: Additional file 1 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 1: Table S1. Metadata for 405 MTBC isolates/datasets used in this study.
DOI: 10.6084/m9.figshare.11953260
title: Additional file 2 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 2: Table S2. 92 genes (coding and upstream regions) implicated in antibiotic resistance.
DOI: 10.6084/m9.figshare.11953254.v1
title: Additional file 1 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 1: Table S1. Metadata for 405 MTBC isolates/datasets used in this study.
DOI: 10.6084/m9.figshare.11953260.v1
title: Additional file 2 of Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

description: Additional file 2: Table S2. 92 genes (coding and upstream regions) implicated in antibiotic resistance.
DOI: 10.6084/m9.figshare.11953089
title: Additional file 1 of PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data

description: Additional file 1: Table S1. Verification of potential significant peaks.
DOI: 10.6084/m9.figshare.11953089.v1
title: Additional file 1 of PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data

description: Additional file 1: Table S1. Verification of potential significant peaks.
DOI: 10.25345/c5gr1t
title: MassIVE MSV000086015 - GNPS - SD Zoo - Rhino serum - 2020
title: Small molecule analysis of Rhino serum extracts from Diceros bicornis, Rhinoceros unicornis, and Ceratotherium simum simum. Standard methanol extraction. Data were acquired using a Thermo Impact Maxis MS and C18 RP-UHPLC. Positive polarity acquisition of LC-MS/MS.
DOI: 10.6084/m9.figshare.11952846
title: Additional file 1 of Rabies in Uganda: rabies knowledge, attitude and practice and molecular characterization of circulating virus strains

description: Additional file 1: SM0. Knowledge, Attitude and Practive survey questionnaire of Rabies in Uganda.
DOI: 10.6084/m9.figshare.11952846.v1
title: Additional file 1 of Rabies in Uganda: rabies knowledge, attitude and practice and molecular characterization of circulating virus strains

description: Additional file 1: SM0. Knowledge, Attitude and Practive survey questionnaire of Rabies in Uganda.
DOI: 10.6084/m9.figshare.11952789
title: Additional file 1 of Targeting human epidermal growth factor receptor 2 enhances radiosensitivity and reduces the metastatic potential of Lewis lung carcinoma cells

description: Additional file 1: Figure S1. LLC cells divided into HER2-knockdown group and vector-control group were seeded in the Matrigel-coated inserts of Boyden chambers, and treated with sham radiation (no RT) or radiation 7.5Gy (RT) and with or without zoledronic acid (ZA, 30 μM). After 24 h the invading cells were fixed, stained, and viewed by microscope (200X). Invading cells were counted. The effect of MMP9 inhibition on reducing invasiveness were presented by the ratio of invaded cell counts in groups with ZA to groups without ZA.
DOI: 10.6084/m9.figshare.11952789.v1
title: Additional file 1 of Targeting human epidermal growth factor receptor 2 enhances radiosensitivity and reduces the metastatic potential of Lewis lung carcinoma cells

description: Additional file 1: Figure S1. LLC cells divided into HER2-knockdown group and vector-control group were seeded in the Matrigel-coated inserts of Boyden chambers, and treated with sham radiation (no RT) or radiation 7.5Gy (RT) and with or without zoledronic acid (ZA, 30 μM). After 24 h the invading cells were fixed, stained, and viewed by microscope (200X). Invading cells were counted. The effect of MMP9 inhibition on reducing invasiveness were presented by the ratio of invaded cell counts in groups with ZA to groups without ZA.
DOI: 10.6084/m9.figshare.11952678
title: Additional file 1 of Molecular typing of Cyclospora cayetanensis in produce and clinical samples using targeted enrichment of complete mitochondrial genomes and next-generation sequencing

description: Additional file 1: Table S1. The distance matrix used for cluster analysis.
DOI: 10.6084/m9.figshare.11952678.v1
title: Additional file 1 of Molecular typing of Cyclospora cayetanensis in produce and clinical samples using targeted enrichment of complete mitochondrial genomes and next-generation sequencing

description: Additional file 1: Table S1. The distance matrix used for cluster analysis.
DOI: 10.6084/m9.figshare.11952585
title: MVCC2_data_version1

description: Data set for Modified Vienna Canine Cognitive Battery version 1 ( after one year of feeding diet)
DOI: 10.6084/m9.figshare.11952576
title: MS1-Matrix-NEG

description: MS1 negative Matrix data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952579
title: MS1-NIST1950-NEG

description: MS1 negative NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952585.v2
title: MVCC2_data_version1

description: Data set for Modified Vienna Canine Cognitive Battery version 1 ( after one year of feeding diet)
DOI: 10.6084/m9.figshare.11952585.v1
title: Cogbat_afterdiet_data_Durga.xlsx

description: Data set for behavioural analysis
DOI: 10.6084/m9.figshare.11952570
title: PMDDA-NEG

description: PMDDA negative NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952573
title: DDA-NEG

description: DDA negative NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952579.v1
title: MS1-NIST1950-NEG

description: MS1 negative NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952567
title: Data from "Urban Vegetation Types are not Perceived Equally in Providing Ecosystem Services and Disservices"

description: Data used in Figures 2, 3, and 4 of the publication;<br>Drillet Z<sup>#</sup>, Fung TK<sup>#</sup>, Leong RAT, Sachidhanandam U, Edwards PJ, Richards DR (2020). Urban vegetation types are not perceived equally in the provision of ecosystem services and disservices. Sustainability 12: 2076. <sup>#</sup>Indicates equal contribution.<br><br>Available open access:<br>https://www.mdpi.com/2071-1050/12/5/2076<br>
DOI: 10.6084/m9.figshare.11952573.v1
title: DDA-NEG

description: DDA negative NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952567.v1
title: Data from "Urban Vegetation Types are not Perceived Equally in Providing Ecosystem Services and Disservices"

description: Data used in Figures 2, 3, and 4 of the publication;<br>Drillet Z<sup>#</sup>, Fung TK<sup>#</sup>, Leong RAT, Sachidhanandam U, Edwards PJ, Richards DR (2020). Urban vegetation types are not perceived equally in the provision of ecosystem services and disservices. Sustainability 12: 2076. <sup>#</sup>Indicates equal contribution.<br><br>Available open access:<br>https://www.mdpi.com/2071-1050/12/5/2076<br>
DOI: 10.6084/m9.figshare.11952558
title: MS1-NIST1950-POS

description: MS1 positive NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952561
title: MS1-Matrix-POS

description: MS1 positive matrix data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952564
title: huaxi heart dataset

description: Data set for heart segmentation
DOI: 10.6084/m9.figshare.11952555
title: DDA-POS

description: DDA positive NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952552
title: Arquivo CSV para scriptLattes com a proposta de Novo Qualis único para todas as áreas

description: Arquivo para ScriptLattes da Proposta de Novo Qualis único para todas as áreas. <br>O arquivo único deve ser colocado na pasta exemplo do scriptLattes e ser indicado no arquivo de configuração trocando a linha:"<i>global-arquivo_qualis_de_periodicos = ./exemplo/qualis_computacao_periodicos_2013.csv</i>"por"<i>global-arquivo_qualis_de_periodicos = ./exemplo/novoqualis.csv</i>"<br><b>ATENÇÃO!!! </b><br>É necessário também apagar o arquivo <b>qualis.pyc</b> e <b>qualis.py</b> e substituir os dois pelos arquivos em <b>qualis.zip</b> disponível em: https://github.com/fcgouveia/scriptLattes-addons [link direto: https://github.com/fcgouveia/scriptLattes-addons/raw/master/qualis.zip] a menos que sua versão de scriptLattes já suporte os novos índices A3, A4 e NP (de Não Pontuado).<br>Para que o relatório some corretamente os novos índices, troque também os arquivos <b>geradorDePaginasWeb.py</b> e <b>geradorDePaginasWeb.pyc</b> baixando os arquivos do link [https://github.com/fcgouveia/scriptLattes-addons/raw/master/geradorDePaginasWeb.pyc.zip]<br>Para usar os Qualis de 2013-2016 veja os arquivos por área em: https://doi.org/10.6084/m9.figshare.5177185.v2
DOI: 10.6084/m9.figshare.11952555.v1
title: DDA-POS

description: DDA positive NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952561.v1
title: MS1-Matrix-POS

description: MS1 positive matrix data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952549
title: PMDDA-POS

description: PMDDA positive NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952552.v1
title: Arquivo CSV para scriptLattes com a proposta de Novo Qualis único para todas as áreas

description: Arquivo para ScriptLattes da Proposta de Novo Qualis único para todas as áreas. <br>O arquivo único deve ser colocado na pasta exemplo do scriptLattes e ser indicado no arquivo de configuração trocando a linha:"<i>global-arquivo_qualis_de_periodicos = ./exemplo/qualis_computacao_periodicos_2013.csv</i>"por"<i>global-arquivo_qualis_de_periodicos = ./exemplo/novoqualis.csv</i>"<br><b>ATENÇÃO!!! </b><br>É necessário também apagar o arquivo <b>qualis.pyc</b> e <b>qualis.py</b> e substituir os dois pelos arquivos em <b>qualis.zip</b> disponível em: https://github.com/fcgouveia/scriptLattes-addons [link direto: https://github.com/fcgouveia/scriptLattes-addons/raw/master/qualis.zip] a menos que sua versão de scriptLattes já suporte os novos índices A3, A4 e NP (de Não Pontuado).<br>Para que o relatório some corretamente os novos índices, troque também os arquivos <b>geradorDePaginasWeb.py</b> e <b>geradorDePaginasWeb.pyc</b> baixando os arquivos do link [https://github.com/fcgouveia/scriptLattes-addons/raw/master/geradorDePaginasWeb.pyc.zip]<br>Para usar os Qualis de 2013-2016 veja os arquivos por área em: https://doi.org/10.6084/m9.figshare.5177185.v2
DOI: 10.6084/m9.figshare.11952549.v1
title: PMDDA-POS

description: PMDDA positive NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.11952531
title: Dataset for Stochastic Planning of Distribution System Considering ESS Regulation Services and Degradation

description: With historical data of load demand, LMP, regulation signals and prices, the Gaussian mixture model (GMM) is adopted to characterize their uncertainties and then typical scenarios with the number of 4, 20, 40, 100 are generated. Both the data and the tool code are shared here.<br>The parameters of the distribution facilities in the 33-bus distribution system are also included in the excel named "Appen_parameters".<br><br>
DOI: 10.6084/m9.figshare.11952531.v1
title: Dataset for Stochastic Planning of Distribution System Considering ESS Regulation Services and Degradation

description: With historical data of load demand, LMP, regulation signals and prices, the Gaussian mixture model (GMM) is adopted to characterize their uncertainties and then typical scenarios with the number of 4, 20, 40, 100 are generated. Both the data and the tool code are shared here.<br>The parameters of the distribution facilities in the 33-bus distribution system are also included in the excel named "Appen_parameters".<br><br>
DOI: 10.6084/m9.figshare.11952534
title: Raw Data

description: Raw Data Availability
DOI: 10.6084/m9.figshare.11952534.v1
title: Raw Data

description: Raw Data Availability
DOI: 10.17633/rd.brunel.11952318
title: Loneliness in the 6 major ethnic minority groups in England and Wales

description: The dataset consists of the variables used in the analysis of our paper published in the European Journal on Ageing:-Victor, C.R., Dobbs, C., Gilhooly, K. <i>et al.</i> Loneliness in mid-life and older adults from ethnic minority communities in England and Wales: measure validation and prevalence estimates. <i>Eur J Ageing</i> (2020). https://doi.org/10.1007/s10433-020-00564-9
DOI: 10.17633/rd.brunel.11952318.v1
title: Loneliness in the 6 major ethnic minority groups in England and Wales

description: The dataset consists of the variables used in the analysis of our paper published in the European Journal on Ageing:-Victor, C.R., Dobbs, C., Gilhooly, K. <i>et al.</i> Loneliness in mid-life and older adults from ethnic minority communities in England and Wales: measure validation and prevalence estimates. <i>Eur J Ageing</i> (2020). https://doi.org/10.1007/s10433-020-00564-9
DOI: 10.6084/m9.figshare.11950662
title: Table S1.xlsx

description: Table S1: Final subsampled OTU table showing the total of sequences within each OTU along the time-series, the percentage of identity (%ID) of each OTU reference sequence to the closest Genebank reference and its taxonomic assignment.
DOI: 10.6084/m9.figshare.11950707.v1
title: final_data_delogu.xlsx

description: dataset on the influence of musicality on productive phonology in L2
DOI: 10.6084/m9.figshare.11950596
title: Metadata record for: A platinum standard pan-genome resource that represents the population structure of Asian rice

description: This dataset contains key characteristics about the data described in the Data Descriptor A platinum standard pan-genome resource that represents the population structure of Asian rice. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11950596.v1
title: Metadata record for: A platinum standard pan-genome resource that represents the population structure of Asian rice

description: This dataset contains key characteristics about the data described in the Data Descriptor A platinum standard pan-genome resource that represents the population structure of Asian rice. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11950593
title: Observed vs modeled data

description: Modeled versus observed salinity and water level from Yabusaki et al 2020<br>
DOI: 10.6084/m9.figshare.11950593.v1
title: Observed vs modeled data

description: Modeled versus observed salinity and water level from Yabusaki et al 2020<br>
DOI: 10.6084/m9.figshare.11950518
title: Falster_et_al_2018_Lake_Surprise.xlsx

description: Geochemical data for Lake Surprise, a crater lake located in western Victoria, southern Australia.<br>Scanning XRF data (Si, Ti, Fe, Mn, Ca, S), calibrated to percentages.<br>Carbon isotope composition of bulk sediment organic matter.<br>Chronology derived from radiocarbon dates from concentrated pollen samples.
DOI: 10.6084/m9.figshare.11950521
title: Supplementary Tables - Taskent et al 2020

description: Supplementary tables for Taskent et al. 2020 - Genetics
DOI: 10.6084/m9.figshare.11950518.v1
title: Falster_et_al_2018_Lake_Surprise.xlsx

description: Geochemical data for Lake Surprise, a crater lake located in western Victoria, southern Australia.<br>Scanning XRF data (Si, Ti, Fe, Mn, Ca, S), calibrated to percentages.<br>Carbon isotope composition of bulk sediment organic matter.<br>Chronology derived from radiocarbon dates from concentrated pollen samples.
DOI: 10.6084/m9.figshare.11950521.v1
title: Supplementary Tables - Taskent et al 2020

description: Supplementary tables for Taskent et al. 2020 - Genetics
DOI: 10.6084/m9.figshare.11950461
title: Data for Modlmeier_et_al_2014_BES.xlsx

description: Data for Modlmeier et al. 2014 in Behavioral Ecology and Sociobiology. File includes raw data for T. curvispinosus repeatability in individual aggressiveness and the collective behavioral data used for analyses.<br>
DOI: 10.6084/m9.figshare.11950488
title: Pathway similarity scores

description: Pair-wise pathway similarity scores targeted by of all small-molecule drugs in Drugbank database, empowered by PPI information