cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1593073
title: Great Salt Lake Fortran Model

description: This data set includes the the input files to run the USGS Great Salt Lake (GSL) fortran model. Also included is the model itself, which has been updated since its last iteration by Loving et al. (2000). The input files are designed to run from 1966-2012, and initial conditions begin in 1966. Model parameters can be easily changed within the included fortran code.
DOI: 10.6084/m9.figshare.1593098.v3
title: Polistes dominula genome assembly

description: This data set is part of the <em>Polistes dominula</em> genome project, and details the assembly of the <em>P. dominula</em> genome, as described in (Standage <em>et al.</em>, manuscript in preparation). Included in this data set is the final genome assembly itself, as well as documentation providing complete disclosure of the assembly procedure.
DOI: 10.6084/m9.figshare.1593040
title: Alien index perl script

description: Perl script for calculating alien index for a set of query sequences. See README.
DOI: 10.6084/m9.figshare.1593047
title: Effect of Sunlight Cover and Level of Crowding on Moss Coverage

description: Group members: Gamsayini, Mary, Shaneil, and Prachi The collection of data for this experiment was completed on Wednesday October 14 2015 and Wednesday October 21 2015 at approximately 3:00 pm to 5:00 pm in Danby woodlot at York University. Although seven days apart, the temperature between both days lacked in variation, allowing for data consistency. On both days it was fairly warm, around 14-15 degrees. Although the temperatures were relatively similar on both days, prior to collecting data on Wednesday October 21st, it had rained, making the soil moist and altering the barometric pressure in the woodlot. Overall, both days were fairly consistent and noise pollution in the area was very low. In order to assess the effect of sunlight cover and level of crowding on moss growth, I, along with my group members, utilized 25 metre transects and 1m x 1m quadrats. The transects were laid down in the Danby woodlot for 25 metres, scattered randomly spanning the center and the perimeter of the forest. Every 5 metre mark on the transect was located and a 1m x 1m quadrat was placed around the 5 metre mark on the transect. This quadrated area was then visually observed for the presence of moss, and was recorded. If moss was present, an estimate of how much area the moss took up in the quadrat was observed and recorded in percentage form. If no moss was present, this value would be 0. Next, the level of sunlight was measured by standing close to the moss and making a diamond shape with the fingers and holding it up to the sky to measure sunlight cover. The area of sunlight observed in the diamond was also recorded in percentage form. Lastly, the level of crowding around the moss was visually observed and was assessed on a scale of 0-3, ranging from no crowding at all to highly crowded, many plants around moss in question. All data recorded during this experiment was obtained from visual estimates obtained by the group members. The transects were laid down 20 times in the Danby woodlot and 5 data points were collected for each transect (as every 5m mark was assessed), resulting in a combined total of 100 data points. The purpose of this experiment was to evaluate the effects of sunlight cover and the level of crowding on the growth of moss. The purpose is to recognize and identify the factors that may restrict or promote the activity of another species in the ecosystem. This experiment allows students to make use of the data collecting tools and utilize them to study interactions between species in an ecosystem and observe the ways in which altering one aspect of the environment may consequently impact another area of the ecosystem.
DOI: 10.6084/m9.figshare.1593047.v1
title: Effect of Sunlight Cover and Level of Crowding on Moss Coverage

description: Group members: Gamsayini, Mary, Shaneil, and Prachi The collection of data for this experiment was completed on Wednesday October 14 2015 and Wednesday October 21 2015 at approximately 3:00 pm to 5:00 pm in Danby woodlot at York University. Although seven days apart, the temperature between both days lacked in variation, allowing for data consistency. On both days it was fairly warm, around 14-15 degrees. Although the temperatures were relatively similar on both days, prior to collecting data on Wednesday October 21st, it had rained, making the soil moist and altering the barometric pressure in the woodlot. Overall, both days were fairly consistent and noise pollution in the area was very low. In order to assess the effect of sunlight cover and level of crowding on moss growth, I, along with my group members, utilized 25 metre transects and 1m x 1m quadrats. The transects were laid down in the Danby woodlot for 25 metres, scattered randomly spanning the center and the perimeter of the forest. Every 5 metre mark on the transect was located and a 1m x 1m quadrat was placed around the 5 metre mark on the transect. This quadrated area was then visually observed for the presence of moss, and was recorded. If moss was present, an estimate of how much area the moss took up in the quadrat was observed and recorded in percentage form. If no moss was present, this value would be 0. Next, the level of sunlight was measured by standing close to the moss and making a diamond shape with the fingers and holding it up to the sky to measure sunlight cover. The area of sunlight observed in the diamond was also recorded in percentage form. Lastly, the level of crowding around the moss was visually observed and was assessed on a scale of 0-3, ranging from no crowding at all to highly crowded, many plants around moss in question. All data recorded during this experiment was obtained from visual estimates obtained by the group members. The transects were laid down 20 times in the Danby woodlot and 5 data points were collected for each transect (as every 5m mark was assessed), resulting in a combined total of 100 data points. The purpose of this experiment was to evaluate the effects of sunlight cover and the level of crowding on the growth of moss. The purpose is to recognize and identify the factors that may restrict or promote the activity of another species in the ecosystem. This experiment allows students to make use of the data collecting tools and utilize them to study interactions between species in an ecosystem and observe the ways in which altering one aspect of the environment may consequently impact another area of the ecosystem.
DOI: 10.6084/m9.figshare.1593036
title: The Effects of Buckthorn Invasive Species on Native Maple Leaf Sapling Plants

description: The duration of the collection of these observations was about 2.5 hours. The group of 5 members was split into two smaller groups, to make the task of observing, collecting, and recording data more efficient. One smaller group had 2 individuals, while the other group had 3 individuals. The group members' names are: Ratiba, Huda, Farkhanda, Olivia, and Reena. The weather conditions at the time of the collection of observations as mentioned in the metadata, were as follows: cool, but sunny, involved rustling of leaves, (on a scale of 0-3, an average of 1, with 3 indicative of a great deal of leaf rustle) no rain, warm, partly cloudy, windy, and dispersed seeds. The majority of the quadrat regions contained significantly more Buckthorn invasive plant species than others, while some quadrats contained more maple leaf saplings. This is most likely due to the fact that in those regions, there were more minerals, nutrients, and sunlight in these areas, thus yielding more of one type of species. The observations, (20 stations), were collected over the course of approximately 5 hours, over two weeks (classes), and quite consistently throughout. The trends, although not all of the time, generally and typically show a 2:1 ratio of Buckthorn invasive plant species, to the native Maple leaf sapling plants.
DOI: 10.6084/m9.figshare.1593073.v1
title: Great Salt Lake Fortran Model

description: This data set includes the the input files to run the USGS Great Salt Lake (GSL) fortran model. Also included is the model itself, which has been updated since its last iteration by Loving et al. (2000). The input files are designed to run from 1966-2012, and initial conditions begin in 1966. Model parameters can be easily changed within the included fortran code.
DOI: 10.6084/m9.figshare.1593027
title: The Effect of Plant Abundance and Exposure to Light on the Growth of Adult Maple Trees

description: Group Members: Kamil Adamczewski, Joelle Brooker, Karin Yosefi, Brittney Jorisch. The data was collected at Danby Woodlot near York University on October 15, 2015 and October 22, 2015. Data was collected between 3:00pm and 4:30pm on October 15, and 3:09pm and 3:55pm on October 22. On October 15, the weather was rainy, cloudy, and very windy with a temperature of 11 degrees Celcius. On October 22, the weather was sunny, few clouds, and slightly windy with a temperature of 13 degrees Celcius. Danby's woodlot was slightly muddy from previous rain activity, and covered with leaves that fell from the surrounding trees. For this field experiment, fifty (n=50) adult Maple trees were sampled to determine their diameter breast height in centimetres. A Maple tree was considered to be an adult if it was as tall as or taller than 180 centimetres. After its diameter breast height was measured using a transect, a half-sized quadrat was formed by using two 3 metre by 3 metre transects, which surrounded the adult Maple tree which laid in the middle. The other half of the quadrat was visually estimated. Then, the abundance of plant species surrounding the Maple tree was collected by visually counting them, excluding the Maple tree itself. Then, by forming a square with one's fingers, the percent canopy cover of the Maple tree was calculated by pointing the square quadrat upwards and estimating the amount of space that the canopy of the Maple tree took up. After all this data was recorded, the adult Maple tree was tagged with orange tape, and the experiment continued to the next Maple tree. The purpose of this experiment was to find a correlation in Maple tree growth based off of the amount of plant species surrounding that Maple tree (abundance), as well as its exposure to light. Diameter breast height was used as an indicator for the growth of the adult Maple tree.
DOI: 10.6084/m9.figshare.1593030
title: pendulum

description: A sketchup model for a simple force impaction device that uses a simple rigid pendulum to cause the impact
DOI: 10.6084/m9.figshare.1593027.v1
title: The Effect of Plant Abundance and Exposure to Light on the Growth of Adult Maple Trees

description: Group Members: Kamil Adamczewski, Joelle Brooker, Karin Yosefi, Brittney Jorisch. The data was collected at Danby Woodlot near York University on October 15, 2015 and October 22, 2015. Data was collected between 3:00pm and 4:30pm on October 15, and 3:09pm and 3:55pm on October 22. On October 15, the weather was rainy, cloudy, and very windy with a temperature of 11 degrees Celcius. On October 22, the weather was sunny, few clouds, and slightly windy with a temperature of 13 degrees Celcius. Danby's woodlot was slightly muddy from previous rain activity, and covered with leaves that fell from the surrounding trees. For this field experiment, fifty (n=50) adult Maple trees were sampled to determine their diameter breast height in centimetres. A Maple tree was considered to be an adult if it was as tall as or taller than 180 centimetres. After its diameter breast height was measured using a transect, a half-sized quadrat was formed by using two 3 metre by 3 metre transects, which surrounded the adult Maple tree which laid in the middle. The other half of the quadrat was visually estimated. Then, the abundance of plant species surrounding the Maple tree was collected by visually counting them, excluding the Maple tree itself. Then, by forming a square with one's fingers, the percent canopy cover of the Maple tree was calculated by pointing the square quadrat upwards and estimating the amount of space that the canopy of the Maple tree took up. After all this data was recorded, the adult Maple tree was tagged with orange tape, and the experiment continued to the next Maple tree. The purpose of this experiment was to find a correlation in Maple tree growth based off of the amount of plant species surrounding that Maple tree (abundance), as well as its exposure to light. Diameter breast height was used as an indicator for the growth of the adult Maple tree.
DOI: 10.6084/m9.figshare.1593030.v1
title: pendulum

description: A sketchup model for a simple force impaction device that uses a simple rigid pendulum to cause the impact
DOI: 10.6084/m9.figshare.1593036.v1
title: The Effects of Buckthorn Invasive Species on Native Maple Leaf Sapling Plants

description: The duration of the collection of these observations was about 2.5 hours. The group of 5 members was split into two smaller groups, to make the task of observing, collecting, and recording data more efficient. One smaller group had 2 individuals, while the other group had 3 individuals. The group members' names are: Ratiba, Huda, Farkhanda, Olivia, and Reena. The weather conditions at the time of the collection of observations as mentioned in the metadata, were as follows: cool, but sunny, involved rustling of leaves, (on a scale of 0-3, an average of 1, with 3 indicative of a great deal of leaf rustle) no rain, warm, partly cloudy, windy, and dispersed seeds. The majority of the quadrat regions contained significantly more Buckthorn invasive plant species than others, while some quadrats contained more maple leaf saplings. This is most likely due to the fact that in those regions, there were more minerals, nutrients, and sunlight in these areas, thus yielding more of one type of species. The observations, (20 stations), were collected over the course of approximately 5 hours, over two weeks (classes), and quite consistently throughout. The trends, although not all of the time, generally and typically show a 2:1 ratio of Buckthorn invasive plant species, to the native Maple leaf sapling plants.
DOI: 10.6084/m9.figshare.1593023
title: Supplementary Table 4: Specificity of the v2 subtyping matrix on 2114 S. aureus FASTQ files from the NCBI SRA

description: Supplementary Table 4: Specificity of the v2 subtyping matrix on 2114 S. aureus FASTQ files from the NCBI SRA
DOI: 10.6084/m9.figshare.1593023.v1
title: Supplementary Table 4: Specificity of the v2 subtyping matrix on 2114 S. aureus FASTQ files from the NCBI SRA

description: Supplementary Table 4: Specificity of the v2 subtyping matrix on 2114 S. aureus FASTQ files from the NCBI SRA
DOI: 10.6084/m9.figshare.1593020
title: Political Speech

description: The most 3200 recent Tweets (obtained 4 Nov, 2015) of the following Twitter accounts: "PPopular", "PSOE", "socialistes_cat", "iunida", "ANOVA_irmandade", "ahorapodemos", "UPYD", "UPyDEuropa", "epp", "PES_PSE", "aldeparty", "europeangreens", "AllianceECR", "europeanleft", "PDE_EDP", "EUPARTYEFA", "AEMN_eu", "ECPM_official", "CiudadanosCs", "EuroPrimaveraIB", "vox_es"
DOI: 10.6084/m9.figshare.1593021
title: Data Files for the paper "Compensated Row-Column Ultrasound Imaging System Using Fisher Tippett Multilayered Conditional Random Field Model"

description: .mat files for data used in the paper.
DOI: 10.6084/m9.figshare.1593021.v1
title: Data Files for the paper "Compensated Row-Column Ultrasound Imaging System Using Fisher Tippett Multilayered Conditional Random Field Model"

description: .mat files for data used in the paper.
DOI: 10.6084/m9.figshare.1592959
title: Towards the complete small RNome of Acinetobacter baumannii

description: Data as published in <em>Microbial Genomics</em> in the following article: Towards the complete small RNome of Acinetobacter baumannii
DOI: 10.6084/m9.figshare.1592987
title: Group 5 Experiment

description: On Wednesday 18th and Wednesday 25th of October, Group 5 members including myself, Maya Francetic, Jaspinder Chera, and Dena Hosseini, conducted an experiment that measured the insect abundance and diversity between high human traffic areas and low human traffic areas at York University. There were three locations of high human traffic areas; In front of Vari Hall, Between Lumbers and Lassonde, and in front of Stong College. There were three areas of low human traffic; Osgoode Woodlot, Stong Woodlot, and Danby Woodlot. Ten pan traps were placed at each location containing soapy water to trap the insects. After a period of about two hours, the pan traps were collected and the insects were counted and recorded on both days.
DOI: 10.6084/m9.figshare.1592959.v1
title: Towards the complete small RNome of Acinetobacter baumannii

description: Data as published in <em>Microbial Genomics</em> in the following article: Towards the complete small RNome of Acinetobacter baumannii
DOI: 10.6084/m9.figshare.1592988
title: Benefits for voice learning caused by concurrent faces develop over time

description: This data file contains d-prime, C, correct RTs, ACCs of the behavioural study "Benefits for voice learning caused by concurrent faces develop over time" as covered in the research article. Conditions and abrreviations: learning modality: V - Voice only; FV - face-voice cycles: pair 12; pair 34; pair 56 animation mode: static; dynamic voice novelty: studied; novel
DOI: 10.6084/m9.figshare.1592931
title: Nūbat Ramal al-Māya in Cultural Context: The Pen, the Voice, the Text

description: These audio files present selections from a live performance of <em>Nūbat Ramal al-Māya</em> by the Jawq Brihi orchestra of Fez, under the direction of the late ʿAbd al-Krīm ar-Rāyis. The original recording is of unknown provenance, and was recorded in the early 1980s. In this unique edition, Carl Davila takes an original approach to the texts of the modern Moroccan Andalusian music tradition. This volume offers a literary-critical analysis and English translation of the texts of this <em>nūba</em>, studies their linguistic and thematic features, and compares them with key manuscripts and published anthologies. Four introductory chapters and four appendices discuss the role of orality in the tradition and the manuscripts that lie behind the print anthologies. Two supplements cross-reference key poetic images in English and Arabic, and provide information on known authors of the texts. This groundbreaking contribution will interest scholars and students of pre-modern Arabic poetry, <em>muwashshaḥāt</em>, Andalusian music traditions, Arabic Studies, orality, and sociolinguistics.
DOI: 10.6084/m9.figshare.1592987.v1
title: Group 5 Experiment

description: On Wednesday 18th and Wednesday 25th of October, Group 5 members including myself, Maya Francetic, Jaspinder Chera, and Dena Hosseini, conducted an experiment that measured the insect abundance and diversity between high human traffic areas and low human traffic areas at York University. There were three locations of high human traffic areas; In front of Vari Hall, Between Lumbers and Lassonde, and in front of Stong College. There were three areas of low human traffic; Osgoode Woodlot, Stong Woodlot, and Danby Woodlot. Ten pan traps were placed at each location containing soapy water to trap the insects. After a period of about two hours, the pan traps were collected and the insects were counted and recorded on both days.
DOI: 10.6084/m9.figshare.1592942
title: The Synoptic Art Experience

description: At the start of the 20th century, Moritz von Rohr invented the synopter: a device that removes 3D depth cues that arise from binocular disparities and vergence. In the absence of these visual cues, the observer is less aware of the physical flatness of the picture. This results in a surprisingly increased depth impression of pictorial space, historically known as the ‘plastic effect’. In this paper we present a practical design to produce a synopter and explore which elements of a painting influence the plastic effect. In the first experiment we showed 22 different paintings to a total of 35 observers, and found that they rate the synoptic effect rather consistent over the various paintings. Subsequent analyses indicated that at least three pictorial cues were relevant for the synoptic effect: figure–ground con­trast, compositional depth and shadows. In experiment 2, we used manipulated pictures where we tried to strengthen or weaken these cues. In all three cases we found at least one effect that confirmed our hypothesis. We also found substantial individual differences: some observers experience little effect, while others are very surprised by the effect. A stereo acuity test revealed that these differences could not be attributed to how well disparities are detected. Lastly, we informally tested our newly designed synopter in museums and found similar idiosyncratic appraisal. But the device also turned out to facilitate discussions among visitors.
DOI: 10.6084/m9.figshare.1592849
title: Ecology lab 4 - Designed experiment of group 2 (lab 08) in Keele campus on Oct 14 and Oct 21, 2015.

description: The designed experiment of group 2 was to compare the density of organism in tall grassland and short grassland. During the lab time (2:30 - 5:30) Oct 14 and Oct 21 2015, the experiment was conducted and data was collected. The location was the grassland beside the law school, both tall grassland and short grassland located there. The quadrat technique was applied to this experiment. There were 5 people in group 2, 2 person were assigned to one group and 3 person were assigned to the other one. The quadrat were set randomly and 30 spots was sampled in each area (tall grassland and short grassland).<br>One was assigned to the 2 people's group and responsible for setting the quadrat while the partner was responsible for recording data. Once the quadrat was set, the height of the grass was measured and the number of grass was counted. In tall grassland, only the tall grasses were counted and in short grassland, the quadrat was divided into 4 section and the grass in one of the section was counted due to the fact that the short grasses were growing crowded. Then the number of insects was counted and recorded. The quadrat was set randomly but still with the following rules: the adjacent spots for setting quadrats were at least 2 meters away from each other; spots with different height of plants were chosen to set quadrat; no same spot was sampled twice. The whole area was divided into 2 and each group was responsible for one. The reason for this was to avoid the same place being sampling twice. It was a sunny day in the first lab, the temperature was between 12 to 20 Celsius degree. It was colder on the day of the second lab, the temperature was between 6 to 14 Celsius degree and with light rain.<br>Group member of the 2 people's group: Franz Gutierrez, Ming Yang.<br>Group member of the 3 people's group: Danti Cosentino, Davis Arkilander, Dhruvil Patel.