cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25903/kf5y-1203
title: Macroalgae and zoanthids require physical contact to harm corals in Southwestern Atlantic

description: <p><strong>Background (extract from related publication): </strong>In coral reefs, sessile competitors can use several mechanisms to outcompete hard corals, most requiring physical contact. Turf algae, macroalgae and zoanthids dominate Southwestern Atlantic (SWA) reefs, however, species-specific responses of corals to competition with these dominant groups are not fully understood, particularly in the Brazilian Province. Here, we assessed the competitive interactions of two coral species, the reef builder <em>S. stellata </em>and the branching <em>M. alcicornis</em>, with two abundant competitors, the macroalga <em>Dictyopteris delicatula </em>and the zoanthid <em>P. caribaeorum</em>.</p>
<p><strong>Methods:</strong> We conducted a 26-day laboratory experiment to investigate coral response to two competitive mechanisms: I) physical contact with competitors and II) proximity to competitors. We monitored coral recovery after ceasing the competitive interaction. Coral response to the competitor and coral recovery were evaluated by measuring coral color and photosynthetic efficiency. We tested whether the two competitive mechanisms negatively impacted corals and whether the coral species responded distinctly to the competitors.</p>
<p><strong>Dataset: </strong>Data used to run the analyzes reported at the research and published paper are included in an Excel file, with two worksheets containing data on photosynthetic efficiency and tissue damage of corals (Siderastrea sp., here "Sid", and Millepora alcicornis, here "Mil") interacting with competitors: macroalgae (here, "Dict" - Dictyopteris delicatula) and zoanthids (here "Paly" - Palythoa caribaeorum).</p>
<p>PAM readings: photosynthetic efficiency values recorded on corals (C1: corals in physical contact with competitors, C1_contact: contacted area by the competitor, C1_overall: area not contacted by the competitor; C2_overall: corals in proximity with competitors) throughout the experiment (days)</p>
<p>Tissue damage: percent damaged area on corals (C1_contact: corals physically contacting the competitors; C2_prox: corals in proximity with competitors)</p>
DOI: 10.25903/1zh0-a862
title: Wallace v2.0: Public biodiversity maps summarized for all taxa levels and climate

description: <p>Wallace 2.0 uses new temperature time-series data for four RCPs provided by the UK Met Office Hadley Centre UK to model the distributions of plants and animals worldwide. Biodiversity summaries were produced at each taxa level (KPCOFGS) of plants and animals in Wallace 2.0. These include areas of concern, refugia, and richness maps. </p>
DOI: 10.25903/cmt0-b449
title: Sulphur isotopes and trace element content of sulphides from the Herberton Mineral Field

description: This dataset contains analyses of sulphide samples from two deposits in the Herberton Mineral Field, North Queensland, Australia. Ore samples from the Baal Gammon and Isabel deposits were analysed for sulphur isotopes through secondary-ion mass spectrometry (SIMS) and trace elements through laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). The minerals analysed include chalcopyrite, pyrrhotite, sphalerite, arsenopyrite, galena, and stannite. SIMS analyses were conducted at the Centre for Microscopy, Characterisation and Analysis at the University of Western Australia, while LA-ICP-MS at the Advanced Analytical Centre of James Cook University.
DOI: 10.25903/5e2541346b21b
title: Utilising novel clinically relevant mouse models to test new therapeutic interventions for peripheral artery diseases: linear mixed effects model statistical outputs for all data

description: <p>Analysis of data investigating clinically relevant animal models of peripheral artery diseases.</p><p>The dataset/document includes linear mixed effects (LME) model raw outputs as per navigation pane/bookmarks:</p><ol><li>LME model analysis of suprarenal aortic diameter as measured by ultrasound in mice receiving control diet or a diet enriched with tree nuts</li><li>Final output: Basic LME of the log of SRA diameters</li><li>LME model analysis of systolic blood pressure in mice receiving control diet or a diet enriched with tree nuts</li><li>Final output: LME allowing for different standard deviations per stratum</li><li>LME model analysis of diastolic blood pressure in mice receiving control diet or a diet enriched with tree nuts</li><li>Final output: LME allowing for different standard deviations per stratum</li><li>LME model analysis of body weight in mice receiving control diet or a diet enriched with tree nuts</li><li>Final output: LME excluding residuals/standard deviation of residuals of >2</li><li>LME model analysis of food consumption in mice receiving control diet or a diet enriched with tree nuts</li><li>Final output: Basic LME of the log of food consumption</li><li>LME model analysis of distance travelled measured by treadmill test in mice receiving control diet or a diet containing quercetin</li><li>Final output: Basic LME of the log of distance travelled</li><li>LME model analysis of blood flow measured by laser Doppler perfusion imaging in mice receiving control diet or a diet containing quercetin</li><li>Final output: Basic LME of blood flow </li><li>LME model analysis of body weight of mice receiving control diet or a diet containing quercetin</li><li>Final output: LME excluding residuals/standard deviation of residuals of >3</li><li>LME model analysis of infrarenal aortic diameter as measured by ultrasound in mice undergoing sham surgery or mice undergoing elastase surgery with oral BAPN</li><li>Final output: LME of the log of IRA diameters</li><li>LME model analysis of infrarenal aortic diameter as measured by ultrasound in mice undergoing elastase surgery with oral BAPN and either vehicle or colchicine gavage</li><li>Final output: LME of the log of IRA diameters</li></ol><p> </p><p> </p><p> </p><p class="Abstractlevel3" style="margin-left: 45.35pt; text-indent: -31.15pt; mso-list: l0 level1 lfo2;"><!-- [if !supportLists]--></p>
DOI: 10.25903/snzx-c059
title: Out of field doses

description: <p>Doses measured out of field for SCE, ESE and HLS. Data collected using film and OSLDs. In house phantoms, solid water and the anterior imaging coil were irradiated and out of field doses were recorded. </p>
<p>[Abstract: Related publication]: With the clinical introduction of MR-linacs, out-of-field dose (OFD) associated with head leakage/scatter (HLS), spiralling contaminant electrons (SCE) and the electron streaming effect (ESE) is of interest. To investigate HLS and SCE, EBT3 film on solid water 5.0 cm beyond each edge of a 10.0&thinsp;&times;&thinsp;10.0 cm<sup>2</sup> field was used to determine depth-dose for 0 T and 1.5 T, in the isocentric plane. Additionally, ESE induced by the anterior imaging coil was quantified and the experimental arrangements to measure SCE and ESE were modelled using Monaco. For a clinical treatment of supraclavicular nodal disease, Monaco OFD was compared to in vivo measurements. For 0 T, depth-dose was isotropic and surface dose was approximately 4.4% of D<sub>max</sub>. With 1.5 T surface doses were approximately 3.8% of D<sub>max</sub> at&thinsp;&plusmn;&thinsp;Y (IEC61217), compared to 2.6% and 0.6% of D<sub>max</sub> at &minus; X and X, respectively. For both field strengths, the TPS depth-dose variation was consistent with experimental trends; however, near surface doses calculated at&thinsp;&plusmn;&thinsp;Y differed significantly from measurements. For the field sizes investigated, measured coil ESE dose was between 9.0 and 28.0% of D<sub>max</sub> and Monaco coil ESE was less than measured by up to 13.0%. OFD in 0 T and 1.5 T are comparable at&thinsp;&plusmn;&thinsp;Y, inconsistent with previous work. Anterior coil ESE should be mitigated during treatment and for the clinical case investigated, in vivo OFD was within 2&sigma; of TPS calculations. Monaco overestimates near surface SCE and underestimates coil ESE.</p>
<p>Software/equipment used to create/collect the data: Software:<br />Verisoft v7.2 (PTW, Freiburg, Germany)<br />FilmQA Pro v5.0 (Ashland ISP Advanced Materials, NJ, USA)<br />ImageJ v1.53a (NIH, Bethesda, MD, USA) </p>
<p>Equipment:<br />Octavius 1500MR array (PTW, Freiburg Germany)<br />PTW 30013 Farmer Ionisation chambers (PTW, Freiburg, Germany)<br />RW3 Solid water (PTW, Freiburg, Germany)<br />Solid Water&reg; HE (Gammex Inc &ndash; A Sun Nuclear Company, Middleton, WI, USA)<br />Gafchromic EBT3/XD/RTQA film (Ashland ISP Advanced Materials, NJ, USA)<br />OSLDs (LANDAUER&reg;, Glenwood, IL, USA)<br />microSTAR&reg;ii Dosimetry Reader (LANDAUER&reg;, Glenwood, IL, USA)</p>
<p>Software/equipment used to manipulate/analyse the data: Excel<br />MATLAB&reg; 2018a (MathWorks, Natick, MA, USA)</p>
DOI: 10.4225/28/5b189660a6746
title: Global conservation planning database: marine proof-of-concept
DOI: 10.4225/28/57983a865286d
title: Dissimilarity matrices between Marxan solutions produced from different levels of planning-unit size, thematic resolution of habitats, and socioeconomic cost data
DOI: 10.25903/5qss-k428
title: Monthly distributions of Cassowary (Casuarius casuarius) in Australia

description: <p>This is the monthly distributions of Cassowary (Casuarius casuarius) in Australia. The monthly times time steps were created using the methods defined in Reside et al (2010).</p>
DOI: 10.25903/n5df-8742
title: Commissioning data

description: <p>Commissioning measurements were performed on an the Townsville Cancer Centre's Elekta Unity MRL. Results for such tests are provided at the locations, and in attachments in the Data Record.</p>
<p>[Extract: Related publication]: MR-guided radiotherapy technology is relatively new and commissioning publications, QA protocols and commercial products are limited. This work provides guidance for implementation measurements that may be performed on the Elekta Unity MR-Linac (Elekta, Stockholm, Sweden). Adaptions of vendor supplied phantoms facilitated determination of gantry angle accuracy and MV isocentre, whereas in-house developed phantoms were used for End-to-End (E2E) testing and anterior coil attenuation measurements. Third-party devices were used for measuring beam quality, reference dosimetry and during IMRT commissioning; however, due to several challenges, variations on standard techniques were required.</p>
<p>The full methodology will be included in the Related publication and made available from a link below.</p>
<p>Software/equipment used to create/collect the data:</p>
<p>Software: Verisoft v7.2 (PTW, Freiburg, Germany) FilmQA Pro v5.0 (Ashland ISP Advanced Materials, NJ, USA) ImageJ v1.53a (NIH, Bethesda, MD, USA)</p>
<p>Equipment: Octavius 1500MR array (PTW, Freiburg Germany) PTW 30013 Farmer Ionisation chambers (PTW, Freiburg, Germany) RW3 Solid water (PTW, Freiburg, Germany) Solid Water&reg; HE (Gammex Inc &ndash; A Sun Nuclear Company, Middleton, WI, USA) Gafchromic EBT3/XD/RTQA film (Ashland ISP Advanced Materials, NJ, USA) OSLDs (LANDAUER&reg;, Glenwood, IL, USA) microSTAR&reg;ii Dosimetry Reader (LANDAUER&reg;, Glenwood, IL, USA)</p>
<p>Software/equipment used to manipulate/analyse the data: Excel MATLAB&reg; 2018a (MathWorks, Natick, MA, USA)</p>
<p>This dataset consists of 3 MS Excel spreadsheets:</p>
<p>&bull; Commissioning 2019.xlsx &ndash; raw commissioning data (28 data sheets)</p>
<p>&bull; Chamber Results.xlsx &ndash; Ionisation chamber results for radiation survey</p>
<p>&bull; Combined Survey Results.xlsx &ndash; All survey results (6 data sheets)</p>
<p>The workbooks have also been saved in OpenDocument (.ods) format for long-term preservation and access.</p>
<p> </p>
DOI: 10.25903/5d2d3d79a6837
title: Vulnerability maps identifying the response of threatened species in Northern Australia to specific threatening processes

description: <p>This collection contains maps of the vulnerability of threatened species in Northern Australia to specific threatening processes across their distribution as well as summary maps describing cumulative vulnerability across different threats and groups of species.</p><p> </p>
DOI: 10.4225/28/59f7ae655a579
title: Connectivity of seagrass meadows in the central Great Barrier Reef
DOI: 10.4225/28/588ff98adab35
title: In solution digestion and mass spectrometry identification of major proteins in various mollusc species
DOI: 10.4225/28/56c671268cf73
title: Dataset describing the biting profile, seasonality and feeding cycle of Anopheles farauti in Haleta village, Solomon Islands
DOI: 10.4225/28/595c67786ff52
title: Female partners of male sex addicts - PTSD and depression, positive and negative social support, cognitive world assumptions
DOI: 10.25903/bf6q-1q13
title: Russell Mulgrave surface drain lines

description: <p>The surface drain network (drain line) GIS dataset is key to understanding the nature and magnitude of runoff contributions of palaeochannels to surface drainage in flat agricultural areas such as Babinda. This project titled &lsquo;Modelling unseen flow pathways of water and contaminants in the Wet Tropics: the role of alluvial palaeochannels&rsquo; was funded by the Queensland Government Department of Environment and Science, Queensland Water Modelling Network. The drain lines were obtained from 1x1 m LiDAR topographic data, drone imagery and analysis of the LiDAR topographic data (DEM analysis using commands such as flow direction, flow accumulation in standard GIS software). Because the study area was very flat, some drain lines were digitised after checking against high resolution drone imagery provided by QLD Government Department of Agriculture and Fisheries.</p>
<p>Software/equipment used to create/collect the data: ArcGIS Pro</p>
<p>Software/equipment used to manipulate/analyse the data: ArcGIS (ArcMap) and ArcGIS Pro</p>
DOI: 10.25903/c38z-ry19
title: RCP6 future climate layers for Australia - 5km resolution

description: <p>RCP6 bioclimatic variable spatial layers developed for Australia (5km grid). The RCP6 emission pathway is a stabilization scenario : stabilization without overshoot pathway to 6 W/m2 at stabilization after 2100. Download 4GB zip file containing layers for 18 Global Circulation Models (GCMs) for decadal timesteps from 2010 to 2100 (30 year average).</p>
DOI: 10.4225/28/5642abfa98e14
title: Neurogenic Heterotopic Ossification: Prevalence , Risk Factors, Management /Treatment
DOI: 10.5281/zenodo.13346469
title: Kinematic and Paleoseismic Investigation of an Upper-Plate Fault on Chirikof Island: A Potential Tsunami-Seismic Hazard Source within the Alaska Subduction Zone
DOI: 10.5281/zenodo.13346470
title: Kinematic and Paleoseismic Investigation of an Upper-Plate Fault on Chirikof Island: A Potential Tsunami-Seismic Hazard Source within the Alaska Subduction Zone
DOI: 10.15468/dl.5d8tda
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((143.850954 -36.838373, 143.850954 -36.842865, 143.841971 -36.842865, 143.841971 -36.84511, 143.837479 -36.84511, 143.837479 -36.851848, 143.841971 -36.851848, 143.841971 -36.847356, 143.848708 -36.847356, 143.848708 -36.851848, 143.8532 -36.851848, 143.8532 -36.84511, 143.855446 -36.84511, 143.855446 -36.842865, 143.8532 -36.842865, 143.8532 -36.838373, 143.850954 -36.838373)), ((143.8532 -36.851848, 143.8532 -36.858585, 143.855446 -36.858585, 143.855446 -36.854094, 143.857692 -36.854094, 143.857692 -36.851848, 143.8532 -36.851848)))"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075357-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25903/pb1v-r198
title: Coral Sea - Coral Reef Health Project: In Situ measurements of water temperature and current flow

description: <p>The Coral Sea is a critically important and environmentally significant ecosystem, which (like coral reefs globally) is increasingly threatened by changing environmental conditions, and especially, ocean warming. Extensive surveys were conducted throughout 2018 and 2019 across 18 reefs in the Coral Sea Marine Park (CSMP), extending from Boot Reef in the north (9.9o latitude) to Cato Reef in the south (23.2oS). This is the most extensive survey ever undertaken of shallow reef environments in the Coral Sea. Importantly, surveys were conducted at Ashmore and Boot Reefs in the far northern CSMP and at Mellish Reef, located east of the central CSMP, where there has been very limited prior research or monitoring of coral reef assemblages. These highly isolated reefs were notable standouts in terms of reef health. In particular, sharks were observed much more frequently and coral cover was generally higher at Ashmore, Boot and Mellish Reefs compared to other reefs throughout the CSMP.</p>
<p>Project summary: The principal output of this project will be providing spatial and temporal analyses of hydrodynamic patterns in the Coral Sea Marine Park (CSMP) to facilitate planning and establishment and/or revisions of existing management plans. This project will inform patterns of connectivity and circulation flow across the broader CSMP, and between CSMP and Great Barrier Reef Marine Park using existing modelling platforms.</p>
DOI: 10.4225/28/55b58fdb5613e
title: Acclimation of cold tolerance in Carlia longipes
DOI: 10.25903/5df182c2f5350
title: Elevated CO2 and food ration affect growth but not the size-based hierarchy of a reef fish

description: <p>Abstract [Related Publication]: Under projected levels of ocean acidification, shifts in energetic demands and food availability could interact to effect the growth and development of marine organisms. Changes to individual growth rates could then flow on to influence emergent properties of social groups, particularly in species that form size-based hierarchies. To test the potential interactive effects of (1) food availability, (2) elevated CO<sub>2</sub> during juvenile development, and (3) parental experience of elevated CO<sub>2</sub> on the growth, condition and size-based hierarchy of juvenile fish, we reared orange clownfish (<span class="Italic">Amphiprion percula</span>) for 50 days post-hatching in a fully orthogonal design. Development in elevated CO<sub>2</sub> reduced standard length and weight of juveniles, by 9% and 13% respectively, compared to ambient. While development under low food availability reduced length and weight of juveniles by 8% and 16% respectively, compared to high food. Parental exposure to elevated CO<sub>2</sub> restored the length of juveniles to that of controls, but it did not restore weight, resulting in juveniles from elevated CO<sub>2</sub> parents exhibiting 33% lower body condition when reared in elevated CO<sub>2</sub>. The body size ratios (relative size of a fish from the rank above) within juvenile groups were not affected by any treatment, suggesting relative robustness of group-level structure despite alterations in individual size and condition. This study demonstrates that both food availability and elevated CO<sub>2</sub> can influence the physical attributes of juvenile reef fish, but these changes may not disrupt the emergent group structure of this social species, at least amongst juveniles.</p><p>The full methodology is available in the Open Access publication from the Related Publications link below.</p>
DOI: 10.25903/5d087d483eacf
title: Interactions between ecological state and fishing practices on coral reefs in South Buton, Indonesia

description: <p>Raw and summary data from a Masters study on “Interactions between ecological state and fishing practices on coral reefs in South Buton, Indonesia</p>
DOI: 10.4225/28/575e4ada2fff0
title: Plantar pressures are higher in cases with diabetic foot ulcers compared to controls despite a longer stance phase duration
DOI: 10.25903/5c2ea9492dc44
title: Streetfighter controlled trial - Follow-up test I

description: <p>Live traffic test of the Streetfighter prototype traffic detection system using controlled traffic.<br /><br />This dataset involves controlled passes of vehicular traffic with a sensor platform located six metres above the road surface.<br /><br />Included in the platform were the following sensors:<br />- 2 * HC-SR501 Wide angle PIR motion detectors<br />- 1 * Panasonic AMN33111J Narrow angle PIR motion detector<br />- 1 * LidarLite v1 lidar<br />- 2 * Melexis MLX90621 thermopile array<br /><br />Tests were conducted with single or multiple vehicles travelling at 30-40 km/h, and with following times ranging from 2 - 10 seconds in both directions of travel, directly underneath the sensor platform.</p>
<p>This dataset consists of the following folders/files:</p>
<ul>
<li>Follow-up test 1 Results: 1 data file in OpenDocument (.ods) format (79 KB)  - analysis of collected results</li>
<li>Vehicle Events.zip: contains 170 compressed image files in JPEG (.jpg) format - video detections of counted by computer vision (4.6 MB) and an events log in .csv format</li>
</ul>
<p>The linked version includes the files listed above as well as:</p>
<ul>
<li>Data folder: contains 13 files in comma-separated values (.csv) format and 1 file in Markdown (.md) format (205 KB). The markdown file (sensor data metadata) is also saved in PDF format and attached.</li>
<li>Raw folder: contains 14 log files (1.2 MB)</li>
<li>Video folder: contains 4 video files in MOV (.mov) format - 1 for the initial test and 3 for the main test (2.8 GB)</li>
</ul>
DOI: 10.4225/28/5add60af3a267
title: Raw data for olfactory response of Acanthochromis polyacanthus in a Y-maze flume
DOI: 10.25903/5e5f126817ab5
title: Sounding the Reef: Comparative Acoustemologies of Underwater Noise Pollution—Album

description: <p>This album collects 13 audio tracks published in <em>Sounding the Reef: Comparative Acoustemologies of Underwater Noise</em> thesis for PhD by Matthew Buttacavoli. These tracks illustrate a variety of underwater acoustic phenomenon or associated data. The tracks consist of seven (7) hydrophone recordings, four (4) monologues, and one (1) sound art piece.</p>
<p>Tracks 1-4, 13 consist of hydrophone recordings made by the author. They were collected during the fieldwork season from July 2017-January 2018 at various reefs within the Great Barrier Reef Marine Park, Cairns/Cooktown Management Area. These recordings were collected via hydrophone dropped from the deck of a commercial dive vessel while the vessel was moored. The recording was then edited in Adobe Audition.</p>
<p>Tracks 6, 8-10 are monologue stories collected from experts in Seattle (US), Friday Harbor (US), and Victoria (Canada). Each speaker was prompted to tell one story about sound and the Salish Sea. Stories were recorded using a Zoom H4 audio recorder and then edited in Adobe Audition.</p>
<p>Track 12 is a sound installation piece which collects four composed sound art pieces commissioned by the author and one field recording by the author (consistent with the methods used in tracks 1-4, 13). The artists were prompted to use the field recording to produce a sound art piece addressing the possible future state of the Great Barrier Reef. The pieces were then combined into one track.</p>
<p>Tracks 5, 7, 11 are hydrophone recordings produced by Orcasound and used in this dataset and thesis under Creative Commons license (CC BY-NC-SA 4.0). All recordings were made via hydrophone in the Salish Sea, in or around the San Juan Islands archipelago.</p>
DOI: 10.25903/h4t6-6z85
title: The public perception of seagrass in the GBR

description: <p>Raw data and script relevant to the article: &lsquo;The public perception of the role, importance and vulnerability of seagrass. A case study from the Great Barrier Reef&rsquo;</p>
<p>Software/equipment used to create/collect the data: Survey Monkey for data collection</p>
<p>Software/equipment used to manipulate/analyse the data: R for statistical analysis Leximancer for content analysis</p>