cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11611002.v1
title: MOESM16 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 16 Table S9. Candidate genes related to lint percentage identified in stable QTLs. (XLSX 11â€‰kb)
DOI: 10.6084/m9.figshare.20521622
title: Additional file 10 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 10. Mitochondrial genes in selective sweep regions.
DOI: 10.6084/m9.figshare.20521625
title: Additional file 11 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 11. Homologous sequence of DEL-D (Pbre-D: 183,739-199,800 bp) in 30 mitogenomes and nuclear genomes.
DOI: 10.6084/m9.figshare.20521649
title: Additional file 3 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 3. Repeat statistics of 38 Rosaceae mitogenomes.
DOI: 10.6084/m9.figshare.20521664
title: Additional file 8 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 8. SNPs annotation of mitogenome.
DOI: 10.6084/m9.figshare.22617596
title: Additional file 6 of Multi-omics analysis identifies drivers of protein phosphorylation

description: Additional file 6: Table S5. Mediation analysis summaries for distant phQTL in three tissues in CC strains.
DOI: 10.6084/m9.figshare.20521634
title: Additional file 14 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 14. Information for the mitochondrial read databases.
DOI: 10.6084/m9.figshare.20521667
title: Additional file 9 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 9. INDELs annotation of mitogenome.
DOI: 10.6084/m9.figshare.20521646
title: Additional file 2 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 2. Mapping depth of 34 newly assembled Rosaceae mitogenomes.
DOI: 10.6084/m9.figshare.7414469.v1
title: Additional file 7: of Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases

description: Table S7. KEGG pathway of hypermethylated and hypomethylated genes in DS versus ES. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.20521655
title: Additional file 5 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 5. Repeat statistics of 88 seed plant mitogenomes.
DOI: 10.6084/m9.figshare.20521661
title: Additional file 7 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 7. 139 wild and cultivated pear accessions and mapping profile.
DOI: 10.6084/m9.figshare.20521661.v1
title: Additional file 7 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 7. 139 wild and cultivated pear accessions and mapping profile.
DOI: 10.6084/m9.figshare.20521667.v1
title: Additional file 9 of Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity

description: Additional file 9. INDELs annotation of mitogenome.
DOI: 10.6084/m9.figshare.11611008
title: MOESM18 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 18 Table S10. Expression pattern of 19 candidate genes related to boll number per plant under salt stress in roots. (XLSX 13â€‰kb)
DOI: 10.6084/m9.figshare.11611008.v1
title: MOESM18 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 18 Table S10. Expression pattern of 19 candidate genes related to boll number per plant under salt stress in roots. (XLSX 13â€‰kb)
DOI: 10.6084/m9.figshare.11611011
title: MOESM19 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 19 Table S11. Expression pattern of 27 candidate genes related to boll number per plant under salt stress in leaves. (XLSX 13â€‰kb)
DOI: 10.6084/m9.figshare.11611011.v1
title: MOESM19 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 19 Table S11. Expression pattern of 27 candidate genes related to boll number per plant under salt stress in leaves. (XLSX 13â€‰kb)
DOI: 10.6084/m9.figshare.22617617.v1
title: Additional file 2 of Seven bacterial response-related genes are biomarkers for colon cancer

description: Additional file 2: Table S1. 276 differentially expressed genes between normal and colon cancer samples in TCGA.
DOI: 10.6084/m9.figshare.22617584
title: Additional file 2 of Multi-omics analysis identifies drivers of protein phosphorylation

description: Additional file 2: Table S1. Information about the 58 CC strains included in this study.
DOI: 10.6084/m9.figshare.11611014
title: MOESM1 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 1 Table S1. Information on 316 cotton accessions used in this study. (XLSX 20â€‰kb)
DOI: 10.6084/m9.figshare.11611014.v1
title: MOESM1 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 1 Table S1. Information on 316 cotton accessions used in this study. (XLSX 20â€‰kb)
DOI: 10.6084/m9.figshare.22617626.v1
title: Additional file 5 of Seven bacterial response-related genes are biomarkers for colon cancer

description: Additional file 5: Table S4. Total 611 bacterial response-related genes from 3 GSEA gene sets.
DOI: 10.6084/m9.figshare.11611017
title: MOESM20 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 20 Table S12. GO enrichment of genes associated with boll number per plant under salt condition A and D. (XLSX 12â€‰kb)
DOI: 10.6084/m9.figshare.11611017.v1
title: MOESM20 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 20 Table S12. GO enrichment of genes associated with boll number per plant under salt condition A and D. (XLSX 12â€‰kb)
DOI: 10.6084/m9.figshare.11611023
title: MOESM3 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 3 Table S2. Measurement of total soil salt content in four different environments. (XLSX 11â€‰kb)
DOI: 10.6084/m9.figshare.11611023.v1
title: MOESM3 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 3 Table S2. Measurement of total soil salt content in four different environments. (XLSX 11â€‰kb)
DOI: 10.6084/m9.figshare.11611026
title: MOESM4 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 4 Table S3. Phenotypic data statistics of single boll weight under four salt conditions. (XLSX 10â€‰kb)
DOI: 10.6084/m9.figshare.11611026.v1
title: MOESM4 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 4 Table S3. Phenotypic data statistics of single boll weight under four salt conditions. (XLSX 10â€‰kb)
DOI: 10.6084/m9.figshare.11611029
title: MOESM5 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 5 Table S4. Phenotypic data statistics of lint percentage under four salt conditions. (XLSX 10â€‰kb)
DOI: 10.6084/m9.figshare.11611029.v1
title: MOESM5 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 5 Table S4. Phenotypic data statistics of lint percentage under four salt conditions. (XLSX 10â€‰kb)
DOI: 10.6084/m9.figshare.11611032
title: MOESM6 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 6 Table S5. Phenotypic data statistics of boll number per plant under four salt conditions. (XLSX 10â€‰kb)
DOI: 10.6084/m9.figshare.11611032.v1
title: MOESM6 of Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

description: Additional file 6 Table S5. Phenotypic data statistics of boll number per plant under four salt conditions. (XLSX 10â€‰kb)
DOI: 10.6084/m9.figshare.10038200
title: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome
DOI: 10.6084/m9.figshare.10038200.v1
title: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome
DOI: 10.6084/m9.figshare.10038203
title: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome
DOI: 10.6084/m9.figshare.10038203.v1
title: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome
DOI: 10.6084/m9.figshare.22617659.v1
title: Additional file 4 of Metabolomic analysis of aqueous humor reveals potential metabolite biomarkers for differential detection of macular edema

description: Additional file 4. Differentially expressed pathways between macular edema (ME) groups. Tables S12–S14. Differentially expressed pathways in BRVO-ME compared with AMD-ME, DME compared with AMD-ME and BRVO-ME compared with DME. AMD-ME, macular edema of age-related macular degeneration; BRVO-ME, macular edema of branch retinal vein occlusion; DME, diabetic macular edema.
DOI: 10.6084/m9.figshare.22617635
title: Additional file 7 of Seven bacterial response-related genes are biomarkers for colon cancer

description: Additional file 7. Data or codes for figure 4–7.
DOI: 10.6084/m9.figshare.10038221
title: MOESM1 of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: Additional file 1: A tab-delimited table in which each row is a hotspot-SNP pair in our original dataset, and columns are positions of hotspots and SNPs, rs(reference SNP ID) number of SNPs and LDsplit P-values and q-values. (TXT 5 MB)
DOI: 10.6084/m9.figshare.10038224
title: MOESM2 of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: Additional file 2: Source code for the LDsplit program and simulation along with a user's manual. (ZIP 679 KB)
DOI: 10.6084/m9.figshare.10038224.v1
title: MOESM2 of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: Additional file 2: Source code for the LDsplit program and simulation along with a user's manual. (ZIP 679 KB)
DOI: 10.6084/m9.figshare.7414520
title: Additional file 1: of Abiraterone acetate for chemotherapy-naive metastatic castration-resistant prostate cancer: a single-centre prospective study of efficacy, safety, and prognostic factors

description: The raw data of mCRPC patients in this study. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7414535
title: Additional file 6: of Filtered reproductive long non-coding RNAs by genome-wide analyses of goat ovary at different estrus periods

description: Table S1. The list of reproductive lncRNA, TUCP and related genes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7414610
title: MOESM5 of ADAR3 expression is an independent prognostic factor in lower-grade diffuse gliomas and positively correlated with the editing level of GRIA2Q607R

description: Additional file 5: Table S1. Genes that correlated with ADAR3 expression in CGGA RNAseq dataset.
DOI: 10.6084/m9.figshare.16851696.v1
title: Table S4 from A global assessment of the impact of school closure in reducing COVID-19 spread

description: Table S4
DOI: 10.6084/m9.figshare.22617650.v1
title: Additional file 1 of Metabolomic analysis of aqueous humor reveals potential metabolite biomarkers for differential detection of macular edema

description: Additional file 1. Differentially expressed metabolites in the macular edema (ME) compared with the control group. Table S1–S4. Differentially expressed metabolites in the DME, BRVO-ME, AMD-ME and ME groups compared with the CON group. AMD-ME, macular edema of age-related macular degeneration; BRVO-ME, macular edema of branch retinal vein occlusion; CON, control; DME, diabetic macular edema.
DOI: 10.6084/m9.figshare.8987501
title: Design and evaluation of rhubarb total free anthraquinones oral colon-specific drug delivery granules to improve the purgative effect

description: Rhubarb is commonly used as a cathartic in Asian countries. However, researchers have devotedextensive concerns to the quality control and safety of rhubarb and traditional Chinese preparations composed of rhubarb due to the instable purgative effect and potential nephrotoxicity of anthraquinones. In this study, we aimed to prepare rhubarb total free anthraquinones (RTFA) oral colon-specific drug delivery granules (RTFA-OCDD-GN) to delivery anthraquinones to colon to produce purgative effect. RTFA-OCDD-GN were prepared using chitosan and Eudragit S100 through a double-layer coating process and the formulation was optimized. Continuous release studies were performed in a simulated gastric fluid (pH 1.2), followed by a small-intestinal fluid (pH 6.8) and a colonic fluid (pH 7.4, containing rat cecal contents). The purgative effect test was performed in rats. The dissolution profile of RTFA-OCDD-GN showed that the accumulative dissolution rate of RTFA was about 83.0% in the simulated colonic fluid containing rat cecal contents and only about 9.0% in the simulated gastrointestinal fluids. And the RTFA-OCDD-GN could produce the comparative purgative activity as rhubarb, suggesting it could deliver the free AQs to the colon. The RTFA-OCDD-GN was a useful media to enhance the purgative activity of free anthraquinones after administered orally.
DOI: 10.6084/m9.figshare.22617563
title: Additional file 2 of Plant domestication shapes rhizosphere microbiome assembly and metabolic functions

description: Additional file 2: Table S1. Plant phenotypes of 44 Tetraploid wheat species after nine years cultivation. Table S2. Plant phenotypes of six selected Tetraploid wheat species, involving T. turgidum Espana (labelled “D1”), T. turgidum Mexicanos (labelled “D2”), T. turgidum Kazakhstan (labelled “D3”), T. turgidum Turkey III (labelled “W1”), T. turgidum Syria VI (labelled “W2”), and T. turgidum Jordan III (labelled “W3”). Five replicates of each wheat accessions were randomly chosen to measure the plant attributes, including plant height, ear length, sub-segment length, and tiller. Table S3. Effect of domestication status, genome type and niche compartment on the bacterial and fungal communities based on PERMANOVA analysis. Table S4. Analysis of ANOSIM testing microbial communities from rhizosphere and bulk soils based on the Bray-Curtis across different treatments. Significance levels of each predictor are as follows: *P&lt; 0.05, **P&lt; 0.01, and ***P&lt; 0.001. Table S5. Topological features of microbial interkingdom association networks in different domesticated status and their corresponding random networks. Table S6. Characteristics of metagenomics sequencing of rhizosphere microbiomes in wild and domesticated wheats. Table S7. Relative abundance of the metagenomics microbial function profiling (KEGG Orthology function category) in wild and domesticated wheats. Table S8. Root morphology trait of wild and domesticated wheat grown in Hogland nutrient solution and inoculation with rhizosphere microbiota. Table S9. Characteristics of soil samples in different plots for domesticated and whild wheats. Soil nutrients include total carbon (TC), total nitrogen (TN), total phosphorus (TP), total organic carbon (TOC), dissolved organic carbon (DOC), dissolved organic nitrogen (DON), nitrate (NO3-), ammonium (NH4+), soil available phosphorus (AP), soil available potassium (AK).
DOI: 10.6084/m9.figshare.22617587
title: Additional file 3 of Multi-omics analysis identifies drivers of protein phosphorylation

description: Additional file 3: Table S2. Sex effect for proteins and phosphorylation sites in three tissues in CC strains.
DOI: 10.6084/m9.figshare.22617590
title: Additional file 4 of Multi-omics analysis identifies drivers of protein phosphorylation

description: Additional file 4: Table S3. Heritability of proteins and phosphorylation sites in three tissues in CC strains.
DOI: 10.6084/m9.figshare.22617587.v1
title: Additional file 3 of Multi-omics analysis identifies drivers of protein phosphorylation

description: Additional file 3: Table S2. Sex effect for proteins and phosphorylation sites in three tissues in CC strains.
DOI: 10.6084/m9.figshare.155876
title: Journals on Twitter

description: Number of followers, following, and tweets from public Twitter accounts for several scientific journals and some societies, publishers, and blog networks. Collected between October 2011 and January 2013. When plotted, there seem to be a few very fast-growing Twitter account, and a few slow ones, but the majority of accounts in this set (selected mainly based on initial follower number - see below) grows with the same rate. Sample set was originally chosen to compare the performance of the @Dev_journal Twitter account, so the initial selection contains mostly accounts within that same range, with some smaller accounts for sibling journals (from the same publisher) added without control for their size. (In other words: this is only useful to compare accounts that fall within the bulk of the graph.) New accounts were added later - those lack data for the first months. Over the course of data collection, two Twitter accounts were abandoned - those lack data for the last months. Data were collected in the middle of the month. The exact collection date is listed at the top of each column. Within each month, numbers for all Twitter accounts were collected on the same date.
DOI: 10.6084/m9.figshare.155879.v1
title: clinminer ontology browser screenshot

description: Screenshot of ClinMiner ontology browser.
DOI: 10.6084/m9.figshare.156395.v36
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Life Sciences at The University of Manchester in 2014. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is given to: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. An e-assessment has been developed and successfully applied to assess larger numbers of students for their skills in applied fly genetics. This assessment and its principal strategies will be made available in due course. Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the genetics manual.
DOI: 10.6084/m9.figshare.155887.v2
title: Conceptions of Intellectual Giftedness among Elementary and Secondary School Teachers of Fast-Learner Education Programs

description: This is an abstract of the master's thesis which I completed in 2010, leading to the conferment of my degree in Master of Arts in Teaching, major in Special Education.
DOI: 10.6084/m9.figshare.155879.v2
title: Screenshot of ClinMiner ontology browser.

description: Screenshot of ClinMiner ontology browser.
DOI: 10.6084/m9.figshare.156395.v37
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Life Sciences at The University of Manchester in 2014. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is given to: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. An e-assessment has been developed and successfully applied to assess larger numbers of students for their skills in applied fly genetics. This assessment and its principal strategies will be made available in due course. Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the genetics manual.
DOI: 10.6084/m9.figshare.155887.v3
title: Conceptions of Intellectual Giftedness among Elementary and Secondary School Teachers of Fast Learners

description: This is an abstract of the master's thesis which I completed in 2010, leading to the conferment of my degree in Master of Arts in Teaching, major in Special Education.