cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/d04645dbd595e0a92a98a2339f224a90
title: SMR01 Konza Prairie grassland soil microbial responses to long-term management of N availability

description: Anthropogenic actions have significantly increased biological nitrogen (N) availability on a global scale. In tallgrass prairies, this phenomenon is exacerbated by land management changes, such as fire suppression. Historically, tallgrass prairie fire removed N through volatilization, but fire suppression has contributed to increased soil N availability as well as woody encroachment. Because soil microbes respond to N availability and plant growth, these changes may alter microbial composition and important microbially-mediated functions. Grassland management affects the soil environment on multiple time scales including short (fertilization or fire event), seasonal (growing vs. non-growing season), and long-term (decadal plant turnover and nutrient accumulation), therefore my goal was to understand community variability at different time scales affecting the population and community dynamics of soil microbes. I predicted soil microbes would be sensitive to environmental changes at all time scales, seasonal variation would reflect increased plant rhizodeposit-supported populations during summer and decomposers during winter, and long-term fire suppression and chronic fertilization would drive soil microbial community turnover associated with accumulation of plant litter and N. Soil microbial responses to short-term fire/fertilization events were minimal, while microbial population sizes fluctuate seasonally and synchronously, and microbial community composition varied more with management history than at shorter time scales. Bacterial populations increased 10x during growing-season plant rhizodeposition, while fungal populations were less dynamic, but decreased in fall, possibly reflecting a shift to subsistence on soil organic matter. In contrast, microbial community composition was seasonally stable, but distinct between long-term management treatments, which may indicate accumulation of niche-defining plant or soil properties over decades. Prokaryotic communities responded to altered N availability via both fertilization and loss due to fire, with the highest abundance of "copiotrophic" (r-selected) taxa in unburned, fertilized soils. Fungal communities responded to N fertilization with higher abundance of arbuscular mycorrhizal fungi, pathogens, and saprotrophs, possibly due to changes in nutrient stoichiometry and litter availability in fertilized plots. However, fungal response to fire was largely independent of N availability, and plant community differences were correlated with fungal, but not bacterial, community composition, highlighting the likely nutritional codependence of fungi and plants, and fungal competitive advantages for plant litter substrates. The timing of changes in soil microbial communities is critical for plant nutrition and nutrient cycling in prairies, and this novel dataset on the temporal resolution of microbial responses to environmental variability contributes to the broader understanding of ecosystem responses to global change.
DOI: 10.5281/zenodo.10265084
title: Software development output metrics for four industrial projects

description: Data used for the paper "Benchmarking ongoing development output in real-life software projects"
DOI: 10.5281/zenodo.10265085
title: Software development output metrics for four industrial projects

description: Data used for the paper "Benchmarking ongoing development output in real-life software projects"
DOI: 10.3886/e195565
title: Sexual Orientation Based Health Disparities in Chile

description: Numerous studies from Europe and North America have documented sexual orientation-based health disparities, but due to data limitations, very little is known about the health of sexual minorities (i.e., lesbians, gay men, bisexual individuals, and other non-heterosexual populations) in developing countries. This research note uses newly available nationally representative data from the Chilean Socio-Economic Characterization Survey (CASEN) to explore sexual orientation-based disparities in self-rated health, health insurance coverage, and healthcare utilization in Chile. Our findings indicate that sexual minority respondents report worse self-rated health and greater health care utilization, and that sexual minority men are more likely to have private health insurance relative to heterosexual men. These findings are important in facilitating continued efforts to reduce health disparities in Latin America.<b></b>
DOI: 10.3886/e195565v1
title: Sexual Orientation Based Health Disparities in Chile

description: Numerous studies from Europe and North America have documented sexual orientation-based health disparities, but due to data limitations, very little is known about the health of sexual minorities (i.e., lesbians, gay men, bisexual individuals, and other non-heterosexual populations) in developing countries. This research note uses newly available nationally representative data from the Chilean Socio-Economic Characterization Survey (CASEN) to explore sexual orientation-based disparities in self-rated health, health insurance coverage, and healthcare utilization in Chile. Our findings indicate that sexual minority respondents report worse self-rated health and greater health care utilization, and that sexual minority men are more likely to have private health insurance relative to heterosexual men. These findings are important in facilitating continued efforts to reduce health disparities in Latin America.<b></b>
DOI: 10.6073/pasta/caff8cde33a6dca2b007e85b5c4a4000
title: SEA01 Soil extracellular enzyme activity data from the Belowground Plot Experiment

description: Data describe the activity of soil extracellular enzymes collected approximately every month in 2015 from the Belowground Plot Experiment. The measured enzymes depolymerize soil organic matter to release labile carbon, nitrogen, and phosphorus. Soil carbon and nitrogen were measured in July 2015 only, since these soil variables are not expected to change monthly.
DOI: 10.6084/m9.figshare.24749229
title: <b>(paper) A Newly Discovered Circovirus and Its Potential Impact on Human Health and Disease</b>

description: The recent discovery of a new circovirus, named Circovirus parisii (C. parisii), in a French hepatitis patient is a notable development in virology and public health. Typically infecting animals, this finding challenges the existing belief that circoviruses do not infect humans. The virus was identified using advanced techniques like shotgun metagenomics and PCR, and it shares characteristics with other circoviruses, along with a unique gene of undetermined function.This discovery is significant in the context of zoonotic diseases, especially considering the global impact of diseases like COVID-19. Research indicates that circoviruses, such as PCV2, can infect human cells in culture and may interact with the human immune system. Concerns have been raised about circovirus contamination in human vaccines, emphasizing the need for strict safety protocols in vaccine production.Further research involving sequence comparison and in silico analysis of the virus's cap protein revealed significant amino acid mutations that could affect the virus's infectivity and pathogenicity. This analysis identified potential epitopes for vaccine development.The case underscores the need for comprehensive research into viruses, including circoviruses, that could infect humans. It highlights the importance of identifying vulnerable populations, developing effective vaccines and therapies, and continuing surveillance and research on emerging viruses to protect public health.
DOI: 10.6084/m9.figshare.24749229.v1
title: <b>(paper) A Newly Discovered Circovirus and Its Potential Impact on Human Health and Disease</b>

description: The recent discovery of a new circovirus, named Circovirus parisii (C. parisii), in a French hepatitis patient is a notable development in virology and public health. Typically infecting animals, this finding challenges the existing belief that circoviruses do not infect humans. The virus was identified using advanced techniques like shotgun metagenomics and PCR, and it shares characteristics with other circoviruses, along with a unique gene of undetermined function.This discovery is significant in the context of zoonotic diseases, especially considering the global impact of diseases like COVID-19. Research indicates that circoviruses, such as PCV2, can infect human cells in culture and may interact with the human immune system. Concerns have been raised about circovirus contamination in human vaccines, emphasizing the need for strict safety protocols in vaccine production.Further research involving sequence comparison and in silico analysis of the virus's cap protein revealed significant amino acid mutations that could affect the virus's infectivity and pathogenicity. This analysis identified potential epitopes for vaccine development.The case underscores the need for comprehensive research into viruses, including circoviruses, that could infect humans. It highlights the importance of identifying vulnerable populations, developing effective vaccines and therapies, and continuing surveillance and research on emerging viruses to protect public health.
DOI: 10.6073/pasta/41f0e5aa1781e722e7922aaaa6b57143
title: OMS01 Microbial and soil data in the Belowground Plot Experiment at konza prairie since 2017

description: Data describe soil chemistry collected during the 2017-2021 growing seasons at the Belowground Plot Experiment to assess for legacies. Whole plot-scale nitrogen fertilization at the Experiment ceased in 2017. Four subplots within each historically fertilized plot were set up to continue the annual fertilization treatment for soil chemistry.
DOI: 10.5281/zenodo.10031482
title: Distinct value computations support rapid sequential decisions

description: This behavioral and modeling data was used and described in the following paper:Mah, A., Schiereck, S.S., Bossio, V., Constantinople, C.M. (2023). Distinct value computations support rapid sequential decisions. Nature Communications.The dataset comprises 
1) Behavioral data for the value-based decision making task in rats, and 
2) computational models fit to the rat behavioral data. 
All files are Matlab data (.mat) files. The code to analyze this data and generate all figures in Mah et al., 2023 is available at {https://github.com/constantinoplelab/published/tree/main/rat_behavior. Data was analyzed using Matlab 2023a with the following additional toolboxes:Curve FitterOptimizationSignal Analyzer
 
Funding: This work was supported by a K99/R00 Pathway to Independence Award (R00MH111926), an Alfred P. Sloan Fellowship, a Klingenstein-Simons Fellowship in Neuroscience, an NIH Director's New Innovator Award (DP2MH126376), an NSF CAREER Award, R01MH125571, and a McKnight Scholars Award to C.M.C. A.M. was supported by 5T90DA043219 and F31MH130121. A.M. and S.S.S. were supported by 5T32MH019524.
DOI: 10.5281/zenodo.10031483
title: Distinct value computations support rapid sequential decisions

description: This behavioral and modeling data was used and described in the following paper:Mah, A., Schiereck, S.S., Bossio, V., Constantinople, C.M. (2023). Distinct value computations support rapid sequential decisions. Nature Communications.The dataset comprises 
1) Behavioral data for the value-based decision making task in rats, and 
2) computational models fit to the rat behavioral data. 
All files are Matlab data (.mat) files. The code to analyze this data and generate all figures in Mah et al., 2023 is available at {https://github.com/constantinoplelab/published/tree/main/rat_behavior. Data was analyzed using Matlab 2023a with the following additional toolboxes:Curve FitterOptimizationSignal Analyzer
 
Funding: This work was supported by a K99/R00 Pathway to Independence Award (R00MH111926), an Alfred P. Sloan Fellowship, a Klingenstein-Simons Fellowship in Neuroscience, an NIH Director's New Innovator Award (DP2MH126376), an NSF CAREER Award, R01MH125571, and a McKnight Scholars Award to C.M.C. A.M. was supported by 5T90DA043219 and F31MH130121. A.M. and S.S.S. were supported by 5T32MH019524.
DOI: 10.34740/kaggle/dsv/7132503
title: Balochi Language to English Translation Dataset
DOI: 10.5281/zenodo.10117405
title: Data for Publication "Deposition of Sodium Metal at the Copper-NaSICON Interface for Reservoir-free Solid-State Sodium Batteries"

description: Description: The data set consists of series of measurements from electrochemical impedance spectroscopy (EIS), optical microscopy, 3D confocal microscopy, focused ion beam - scanning electron microscopy (FIB-SEM), and in situ scanning transmission electron microscpy (STEM) to characterize sodium metal deposition at the Cu|NaSCION interface. The data set presented serves as the basis for the following publication:
Title: Deposition of Sodium Metal at the Copper-NaSICON Interface for Reservoir-free Solid-State Sodium Batteries
Authors: Till Ortmann, Till Fuchs, Janis K. Eckhardt, Ziming Ding, Qianli Ma, Frank Tietz, Christian Kübel, Marcus Rohnke, Jürgen Janek
DOI: https://doi.org/10.1002/aenm.202302729 
description: "Anode‐free" solid‐state battery concepts are explored extensively as they promise a higher energy density with less material consumption and simple anode processing. Here, the homogeneous and uniform electrochemical deposition of alkali metal at the interface between current collector and solid electrolyte plays the central role to form a metal anode within the first cycle. While the cathodic deposition of lithium has been studied intensively, knowledge on sodium deposition is scarce. In this work, dense and uniform sodium layers of several microns thickness are deposited at the Cu|Na3.4Zr2Si2.4P0.6O12 interface with high reproducibility. At current densities of ≈1 mA∙cm−2, relatively uniform coverage is achieved underneath the current collector, as shown by electrochemical impedance spectroscopy and 3D confocal microscopy. In contrast, only slight variations of the coverage are observed at different stack pressures. Early stages of the sodium metal growth are analyzed by in situ transmission electron microscopy revealing oriented growth of sodium. The results demonstrate that reservoir‐free ("anode‐free") sodium‐based batteries are feasible and may stimulate further research efforts in sodium‐based solid‐state batteries. 
Abstract from: https://doi.org/10.1002/aenm.202302729
DOI: 10.5281/zenodo.10117406
title: Data for Publication "Deposition of Sodium Metal at the Copper-NaSICON Interface for Reservoir-free Solid-State Sodium Batteries"

description: Description: The data set consists of series of measurements from electrochemical impedance spectroscopy (EIS), optical microscopy, 3D confocal microscopy, focused ion beam - scanning electron microscopy (FIB-SEM), and in situ scanning transmission electron microscpy (STEM) to characterize sodium metal deposition at the Cu|NaSCION interface. The data set presented serves as the basis for the following publication:
Title: Deposition of Sodium Metal at the Copper-NaSICON Interface for Reservoir-free Solid-State Sodium Batteries
Authors: Till Ortmann, Till Fuchs, Janis K. Eckhardt, Ziming Ding, Qianli Ma, Frank Tietz, Christian Kübel, Marcus Rohnke, Jürgen Janek
DOI: https://doi.org/10.1002/aenm.202302729 
description: "Anode‐free" solid‐state battery concepts are explored extensively as they promise a higher energy density with less material consumption and simple anode processing. Here, the homogeneous and uniform electrochemical deposition of alkali metal at the interface between current collector and solid electrolyte plays the central role to form a metal anode within the first cycle. While the cathodic deposition of lithium has been studied intensively, knowledge on sodium deposition is scarce. In this work, dense and uniform sodium layers of several microns thickness are deposited at the Cu|Na3.4Zr2Si2.4P0.6O12 interface with high reproducibility. At current densities of ≈1 mA∙cm−2, relatively uniform coverage is achieved underneath the current collector, as shown by electrochemical impedance spectroscopy and 3D confocal microscopy. In contrast, only slight variations of the coverage are observed at different stack pressures. Early stages of the sodium metal growth are analyzed by in situ transmission electron microscopy revealing oriented growth of sodium. The results demonstrate that reservoir‐free ("anode‐free") sodium‐based batteries are feasible and may stimulate further research efforts in sodium‐based solid‐state batteries. 
Abstract from: https://doi.org/10.1002/aenm.202302729
DOI: 10.6084/m9.figshare.13357142
title: Ann-o-mate dataset

description: Ann-o-mate example dataset.
DOI: 10.6084/m9.figshare.13357142.v5
title: Ann-o-mate dataset

description: Ann-o-mate example dataset.
DOI: 10.6084/m9.figshare.13357142.v4
title: Ann-o-mate dataset

description: Ann-o-mate example dataset.
DOI: 10.21227/sreb-z955
title: ASCC Activities of Daily Living Dataset

description: Activities of daily living (ADLs) monitoring is essenitial in elderly field as it provides daily activities information for caregivers. In human daily life, different activities occur in various locations and generate distinct sounds and body movement. We can combine this kind of information to recognize the activities.This dataset includes activities as long as the corresponding data: image, audio, motion. The data was collected from ASCCLab smarthome testbed, as shown in Figure 1. We mounted the wearable device shown in Figure 2 on the chest to collect image, audio and motion data.The dataset follows the daily patterns of Milan in date 12/11/2009 from Casas project [1], which contains 14 activities. And the activities are between 08:46:27 to 22:48:49.
DOI: 10.6084/m9.figshare.24749322
title: Data Repository: Personality of dairy calves influences response to disease, pain, and nutrition challenges

description: Data utilized for analysis in "Personality of dairy calves influences response to disease, pain, and nutrition challenges".
DOI: 10.6073/pasta/453da18612741eb24e3bc900ceee908c
title: 1830 Map of Land Cover and Cultural Features in Massachusetts

description: Background and Data Limitations The Massachusetts 1830 map series represents a unique data source that depicts land cover and cultural features during the historical period of widespread land clearing for agricultural. To our knowledge, Massachusetts is the only state in the US where detailed land cover information was comprehensively mapped at such an early date. As a result, these maps provide unusual insight into land cover and cultural patterns in 19th century New England. However, as with any historical data, the limitations and appropriate uses of these data must be recognized: (1) These maps were originally developed by many different surveyors across the state, with varying levels of effort and accuracy. (2) It is apparent that original mapping did not follow consistent surveying or drafting protocols; for instance, no consistent minimum mapping unit was identified or used by different surveyors; as a result, whereas some maps depict only large forest blocks, others also depict small wooded areas, suggesting that numerous smaller woodlands may have gone unmapped in many towns. Surveyors also were apparently not consistent in what they mapped as ‘woodlands’: comparison with independently collected tax valuation data from the same time period indicates substantial lack of consistency among towns in the relative amounts of ‘woodlands’, ‘unimproved’ lands, and ‘unimproveable’ lands that were mapped as ‘woodlands’ on the 1830 maps. In some instances, the lack of consistent mapping protocols resulted in substantially different patterns of forest cover being depicted on maps from adjoining towns that may in fact have had relatively similar forest patterns or in woodlands that ‘end’ at a town boundary. (3) The degree to which these maps represent approximations of ‘primary’ woodlands (i.e., areas that were never cleared for agriculture during the historical period, but were generally logged for wood products) varies considerably from town to town, depending on whether agricultural land clearing peaked prior to, during, or substantially after 1830. (4) Despite our efforts to accurately geo-reference and digitize these maps, a variety of additional sources of error were introduced in converting the mapped information to electronic data files (see detailed methods below). Thus, we urge considerable caution in interpreting these maps. Despite these limitations, the 1830 maps present an incredible wealth of information about land cover patterns and cultural features during the early 19th century, a period that continues to exert strong influence on the natural and cultural landscapes of the region. Acknowledgements Financial support for this project was provided by the BioMap Project of the Massachusetts Natural Heritage and Endangered Species Program, the National Science Foundation, and the Andrew Mellon Foundation. This project is a contribution of the Harvard Forest Long Term Ecological Research Program.
DOI: 10.15139/s3/x7kxqb
title: A*CENSUS II All Archivists Survey, 2022

description: The second comprehensive Archival Census and Education Needs Survey in the United States (A*CENSUS II) was funded by a grant from the Institute of Museum and Library Services. Working with research firm ITHAKA S+R, SAA surveyed every self-identified archivist/archives worker in the U.S. to gather information about their demographics, educational background and needs, job placement and status, and salaries, as well as their perspectives on key issues in the field.
DOI: 10.5517/ccdc.csd.cc1n75sv
title: CCDC 1526247: Experimental Crystal Structure Determination

description: Related Article: Maryam Mohamadi, S. Yousef Ebrahimipour, Jesus Castro, Sabine Foro|2023|J.Mol.Struct.|1299|137057|doi:10.1016/j.molstruc.2023.137057
description: Related Article: Jesus Castro, S. Yousef Ebrahimipour, Maryam Mohamadi, Jesus Castro, Sabine Foro, Wolfgang Haase|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10267061
title: Supplementary Material for the paper entitled The maternity challenges in the software industry and academia: a survey with mothers from the Software Engineering field
DOI: 10.5281/zenodo.10267060
title: Supplementary Material for the paper entitled The maternity challenges in the software industry and academia: a survey with mothers from the Software Engineering field
DOI: 10.5281/zenodo.10266248
title: SQUID manuscript workflow with outputs

description: This repository reproduces the analysis performed in for our method SQUID (Surrogate Quantitative Interpretability for Deepnets; Seitz, McCandlish, Kinney and Koo). It contains tools to apply SQUID on several previously-published genomic models, and compare its results to existing attribution methods.
The scripts contained in this release are a replica of those found in the current release of our GitHub repository (https://github.com/evanseitz/squid-manuscript as of commit 5b47a7d), with the addition that all intermediate and final outputs are provided here.