cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8047120
title: Impaired mitochondrial respiration in REM-sleep behavior disorder as possible biomarker of Parkinson's Disease

description: Background: Idiopathic REM sleep Behavior Disorder (iRBD) is recognized to be associated with prodromal Parkinson disease (PD). However, the mechanisms linking phenoconversion of iRBD to PD have not yet been clarified. Considering the association between mitochondrial dysfunction and sleep disturbances in PD, we aimed to explore mitochondrial activity in fibroblasts derived from iRBD patients to identify a biochemical profile that could mark the presence of impending neurodegeneration.


Methods: The study involved 28 participants, divided into three groups: patients with iRBD, PD patients converted from iRBD (RBD-PD) and healthy subjects. We performed a comprehensive assessment of mitochondrial function, including an examination of mitochondrial morphology, analysis of mitochondrial protein expression levels using western blot analysis, and measurement of mitochondrial respiration using the Seahorse XFe24 analyzer.


Results: Although no differences in mitochondrial respiration between iRBD and control fibroblasts were found in basal conditions, when cells are challenged with a higher energy demand, they exhibit a significant drop in maximal (p=0.006) and spare respiration (p=0.006). RBD patients already converted to PD, RBD-PD, show the same alterations and, in addition, have a reduction in oxygen consumption linked to ATP production (p=0.032).


Conclusions: These findings suggest that the observed mitochondrial alterations in individuals with iRBD may predispose to the worsening of the bioenergetic profile observed in RBD-PD subjects, highlighting these alterations as potential predictors of phenoconversion to PD.
DOI: 10.5281/zenodo.8047121
title: Impaired mitochondrial respiration in REM-sleep behavior disorder as possible biomarker of Parkinson's Disease

description: Background: Idiopathic REM sleep Behavior Disorder (iRBD) is recognized to be associated with prodromal Parkinson disease (PD). However, the mechanisms linking phenoconversion of iRBD to PD have not yet been clarified. Considering the association between mitochondrial dysfunction and sleep disturbances in PD, we aimed to explore mitochondrial activity in fibroblasts derived from iRBD patients to identify a biochemical profile that could mark the presence of impending neurodegeneration.


Methods: The study involved 28 participants, divided into three groups: patients with iRBD, PD patients converted from iRBD (RBD-PD) and healthy subjects. We performed a comprehensive assessment of mitochondrial function, including an examination of mitochondrial morphology, analysis of mitochondrial protein expression levels using western blot analysis, and measurement of mitochondrial respiration using the Seahorse XFe24 analyzer.


Results: Although no differences in mitochondrial respiration between iRBD and control fibroblasts were found in basal conditions, when cells are challenged with a higher energy demand, they exhibit a significant drop in maximal (p=0.006) and spare respiration (p=0.006). RBD patients already converted to PD, RBD-PD, show the same alterations and, in addition, have a reduction in oxygen consumption linked to ATP production (p=0.032).


Conclusions: These findings suggest that the observed mitochondrial alterations in individuals with iRBD may predispose to the worsening of the bioenergetic profile observed in RBD-PD subjects, highlighting these alterations as potential predictors of phenoconversion to PD.
DOI: 10.5281/zenodo.8392607
title: CSF22

description: 1087 French sentences cued by a professional French Cuer with typical hearing


CSF22


- video aspects 1920x1020, 30-60 fps


- audio/ aspects   44.1 kHz


|---→CSF22_test


        |---→test_labels: 108 csv files


        |---→test_videos: 108 webm files


|---→CSF22_train


        |---→train_labels: 949 csv files


        |---→train_videos: 949 webm files


|---→ phonelist.csv: list of the 36 labels used (including start and end tokens) to encode French phonemes at GIPSA-lab.


|---→ prompts.csv: Text prompt of the recorded sentences
DOI: 10.5281/zenodo.8392608
title: CSF22

description: 1087 French sentences cued by a professional French Cuer with typical hearing


CSF22


- video aspects 1920x1020, 30-60 fps


- audio/ aspects   44.1 kHz


|---→CSF22_test


        |---→test_labels: 108 csv files


        |---→test_videos: 108 webm files


|---→CSF22_train


        |---→train_labels: 949 csv files


        |---→train_videos: 949 webm files


|---→ phonelist.csv: list of the 36 labels used (including start and end tokens) to encode French phonemes at GIPSA-lab.


|---→ prompts.csv: Text prompt of the recorded sentences
DOI: 10.5281/zenodo.10609256
title: Metadata - Mirogabalin decreases pain-like behaviors by inhibiting the microglial/macrophage activation, p38MAPK signaling, and pronociceptive CCL2 and CCL5 release in a mouse model of neuropathic pain"
DOI: 10.5281/zenodo.10609257
title: Metadata - Mirogabalin decreases pain-like behaviors by inhibiting the microglial/macrophage activation, p38MAPK signaling, and pronociceptive CCL2 and CCL5 release in a mouse model of neuropathic pain"
DOI: 10.6084/m9.figshare.24456235.v1
title: 应力对碳酸盐岩走滑断层裂缝分布及弹性性质的影响：一种新的岩石物理建模视角.xlsx

description: 该项目包括提交给《地球物理研究杂志：固体地球》的手稿中所需的统计、实验和模型预测数据集。
DOI: 10.5281/zenodo.10609204
title: Rotated MNIST dataset
DOI: 10.5281/zenodo.10609205
title: Rotated MNIST dataset
DOI: 10.5281/zenodo.10609694
title: Rotated MNIST dataset
DOI: 10.5281/zenodo.5845113
title: Environment and density-dependency explain the fine-scale distribution of tree recruits before and after thinning

description: Dataset used in the article "Environment and density-dependency explain the fine-scale distribution of tree recruits before and after thinning" in PeerJ
description: This research was funded by the Spanish Ministry of Economy and Competitiveness (AGL2006-08288 and AGL2009-11287). JRP was was funded from "la Caixa" and "Caja Navarra" Foundation, under agreement LCF/PR PR13/51080004  in the framework of UPNA's "Captación de Talento" program.
DOI: 10.5281/zenodo.5845114
title: Environment and density-dependency explain the fine-scale distribution of tree recruits before and after thinning

description: Dataset used in the article "Environment and density-dependency explain the fine-scale distribution of tree recruits before and after thinning" in PeerJ
description: This research was funded by the Spanish Ministry of Economy and Competitiveness (AGL2006-08288 and AGL2009-11287). JRP was was funded from "la Caixa" and "Caja Navarra" Foundation, under agreement LCF/PR PR13/51080004  in the framework of UPNA's "Captación de Talento" program.
DOI: 10.5281/zenodo.10606443
title: Molecule dataset used in the paper "Electrostatic Discovery Atomic Force Microscopy"

description: Dataset of molecules used for generating the training data for the machine learning models in the paper "Electrostatic Discovery Atomic Force Microscopy".

The molecules are saved in the xyz format containing the atomic coordinates, elements, and partial charges.
DOI: 10.21252/6xgg-pv56
title: Supplementary data to Long-term outcomes of COVID-19 infection in children and young people: a systematic review and meta-analysis
DOI: 10.5281/zenodo.10606442
title: Datasets used in the paper "Electrostatic Discovery Atomic Force Microscopy"

description: Dataset of molecules used for generating the training data for the machine learning models as well as simulated and experimental atomic force microscopy (AFM) data used in the paper "Electrostatic Discovery Atomic Force Microscopy".

The molecules in molecules_rebias.tar.gz are saved in the xyz format containing the atomic coordinates, elements, and partial charges.

The AFM data is in edafm-data.tar.gz, and contains data for six different systems:



1-bromo-3,5-dichlorobenzene (BCB)

N2-(2-chloroethyl)-N-(2,6-dimethylphenyl)-N2-methylglycinamide (NCM)

4-pyridinecarboxylic acid, 2-[(1E)-2-thienylmethylene]-hydrazide (PTH)

tetrathiafulvalene thiadiazole (TTF-TDZ)

perylenetetracarboxylic dianhydride (PTCDA)

a cluster of seven water molecules on Cu(111)


Both simulated and experimental data are provided for BCB, PTCDA, and the water cluster, while the other three only have simulated data.

For each system, there are AFM images obtained both with a CO and a Xe tip, saved in the data_CO.npz and data_Xe.npz numpy files. In each npz file there are three data entries: "data", "lengthX", and "lengthY", which contain the image data, and the physical extent of the scan region in Ånströms in the x and y directions.

Additionally the archive contains for each system the "Electrostatic Map" descriptor in ESMapHartree.npy numpy file, the molecule geometry in mol.xyz, and a png image of the molecule.
DOI: 10.5281/zenodo.10609676
title: Datasets used in the paper "Electrostatic Discovery Atomic Force Microscopy"

description: Dataset of molecules used for generating the training data for the machine learning models as well as simulated and experimental atomic force microscopy (AFM) data used in the paper "Electrostatic Discovery Atomic Force Microscopy".

The molecules in molecules_rebias.tar.gz are saved in the xyz format containing the atomic coordinates, elements, and partial charges.

The AFM data is in edafm-data.tar.gz, and contains data for six different systems:



1-bromo-3,5-dichlorobenzene (BCB)

N2-(2-chloroethyl)-N-(2,6-dimethylphenyl)-N2-methylglycinamide (NCM)

4-pyridinecarboxylic acid, 2-[(1E)-2-thienylmethylene]-hydrazide (PTH)

tetrathiafulvalene thiadiazole (TTF-TDZ)

perylenetetracarboxylic dianhydride (PTCDA)

a cluster of seven water molecules on Cu(111)


Both simulated and experimental data are provided for BCB, PTCDA, and the water cluster, while the other three only have simulated data.

For each system, there are AFM images obtained both with a CO and a Xe tip, saved in the data_CO.npz and data_Xe.npz numpy files. In each npz file there are three data entries: "data", "lengthX", and "lengthY", which contain the image data, and the physical extent of the scan region in Ånströms in the x and y directions.

Additionally the archive contains for each system the "Electrostatic Map" descriptor in ESMapHartree.npy numpy file, the molecule geometry in mol.xyz, and a png image of the molecule.
DOI: 10.5281/zenodo.10405062
title: Diagnostic and clinical implications of MOG-IgG detection in cerebrospinal fluid: the importance of MOG-IgG intrathecal synthesis

description: The database contains information regarding patients with MOG-IgG included in the study, including demographic, clinical presentation and course, neuroradiological data, laboratory data, outcome data.
DOI: 10.5281/zenodo.10405063
title: Diagnostic and clinical implications of MOG-IgG detection in cerebrospinal fluid: the importance of MOG-IgG intrathecal synthesis

description: The database contains information regarding patients with MOG-IgG included in the study, including demographic, clinical presentation and course, neuroradiological data, laboratory data, outcome data.
DOI: 10.17615/tvzd-v624
title: Social media use

description: In progress data set for social media use.
DOI: 10.34808/aajk-fz25
title: Effect of novel bisacridines (IKE16, IKE18, IKE19, IKE21) and IE10 on the biofilm formation of C. albicans ATCC 10231 cells

description: The datasets contain the results of the impact of novel bisacridines (IKE16, IKE18, IKE19, IKE21) and IE10 on the biofilm formation of Candida albicans strain ATCC 10231 cells. Photographic documentation prepared with the TECAN Spark 10M titration plate reader.
DOI: 10.6084/m9.figshare.25133906
title: Supplementary Material for: Left Atrial Appendage Occlusion Versus Direct Oral Anticoagulants in the Prevention of Ischaemic Stroke in Patients with Atrial Fibrillation

description: Introduction Existing randomised controlled trials assessing the safety and efficacy of left atrial appendage occlusion (LAAO) in atrial fibrillation (AF) were of relatively small sample size, or included patients who could receive oral anticoagulant treatment after device implantation. We compared the outcomes of patients with newly diagnosed AF who received percutaneous LAAO or direct oral anticoagulants (DOAC) treatment, in a large population from a global federated health network (TriNetX).

Methods Patients with AF treated with percutaneous LAAO were matched with those treated with DOAC between 1st December 2010 and 1st October 2018. Outcomes were all-cause mortality, ischaemic stroke and intracranial haemorrhage (ICH) at 5 years. 

Results We included 200 patients with AF, who received either LAAO or DOAC. The risk of all-cause mortality, ischaemic stroke and ICH at 5 years was not significantly different between the two groups (Risk Ratio [RR] for all-cause mortality: 1.52, 95% confidence interval (CI): 0.97- 2.38, RR for ischaemic stroke: 1.09, 95% CI: 0.51- 2.36, and RR for ICH: 1.0, 95% CI: 0.44- 2.30). 

Conclusion 
Patients newly diagnosed with AF, eligible for DOAC, showed similar 5-year risk of death, ischemic stroke, and ICH when comparing those who underwent percutaneous LAAO to those receiving DOAC. Future randomised controlled trials are needed to confirm the findings and advise changes in guidelines.
DOI: 10.17615/b97q-4053
title: Young adult cancer support via social media

description: Purpose. Social media can facilitate peer support among young adults with cancer; however, more information is needed about what social media are used, by whom, and how.
Methods. In December 2021, we conducted an online survey with 396 young adults with cancer, ages 18-39 with any diagnosis ages 15-39. Participants reported their social media use to connect with other young adults with cancer, including frequency of use, type of support, and affect (positive to negative) when using to connect with cancer peers. 
Results. Participants were on average 31 years old (SD = 5.2), with an average age of 27 at diagnosis (63.4% male, 62.1% non-Hispanic white). Almost all (97.5%) reported using social media to connect with other young adults with cancer. Many (48.0%) used three or more social media platforms for cancer support, including Facebook (44.4%), YouTube (43.6%), Instagram (43.4%), Snapchat (36.9%), and Twitter (36.9%). Daily use for cancer support was common (32.9-60.9%) among those who used social media, particularly among those who were younger; are not transgender; live in urban areas; or had brain, gynecologic, or testicular cancers. Across social media platforms, young adults with cancer reported seeking and sharing emotional support (88.9%), informational support (84.1%), and making connections (81.3%).  
Conclusion. Many young adults with cancer use social media to connect with peers with cancer, albeit differently across platforms and for different types of support. Commonly used social media should be incorporated in intervention designs to reach young adults who desire more age-appropriate resources to improve their psychosocial health.
DOI: 10.6084/m9.figshare.21022081
title: do not trust your ears - DATA

description: Anonymised data from five Experiments investigating the effects of voice similarity on trustworthiness and likeability.
DOI: 10.6084/m9.figshare.21022081.v2
title: do not trust your ears - DATA

description: Anonymised data from five Experiments investigating the effects of voice similarity on trustworthiness and likeability.
DOI: 10.6084/m9.figshare.21022081.v1
title: do not trust your ears - DATA

description: Anonymised data from five Experiments investigating the effects of voice similarity on trustworthiness and likeability.
DOI: 10.5281/zenodo.10609742
title: Experimental dataset of the article:  "Improving the precision of time synchronization protocols in ultra-wideband networks estimating the time of flight of the radio signal"

description: Files containing the timestamps collected in the experiments carried out during the evaluation of the algorithm presented in the article: "Improving the precision of time synchronization protocols in ultra-wideband networks estimating the time of flight of the radio signal"
DOI: 10.5281/zenodo.10609743
title: Experimental dataset of the article:  "Improving the precision of time synchronization protocols in ultra-wideband networks estimating the time of flight of the radio signal"

description: Files containing the timestamps collected in the experiments carried out during the evaluation of the algorithm presented in the article: "Improving the precision of time synchronization protocols in ultra-wideband networks estimating the time of flight of the radio signal"
DOI: 10.17031/65bcdb208d4db
title: Gelatinous zooplankton CPR North Atlantic 1958 to 2021

description: Excel file containing CPR data for area 40N to 66N, -71W to 11E, 1958 to 2021, sample level data (each sample being 1 row, equating to approx. 10 nautical miles of tow, 3m3 of filtered seawater), grouped into Standard CPR Areas, for Thaliacea, Salpidae, Doliolidae and Cnidaria tissue. For each taxa, values indicate abundance (according to standard CPR methodology, see Richardson et al. 2006, Prog in Oceanog 68. 27-74), values of 0.001 indicate presence only, zero values are absence of taxon. The excel file consists of samples in rows, with the following information in columns - A: Standard Area B: sample id C:midpoint of sample latitude in decimal degrees D:midpoint of sample longitude in decimal degrees E:midpoint of sample local date and time F:sample year G: sample month H-K: taxa abundance. NOTE due to a change in methodology (effort), Cnidaria should be considered as two separate time series, 1958 to 2007, 2007 to 2021.
DOI: 10.17031/65afd01b4e0e2.1
title: 2020, Glen Wheeler, The Marine Biological Association of the UK (MBA) Coccolithus braarudii life cycle protein mass spectrometry

description: Coccolithophores are crucial for marine biogeochemical cycling. However, much of their physiology remains poorly understood, particularly their elusive haplo-diplontic life cycle. We aimed to characterise differences between HET and HOL Coccolithus braarudii by carrying out protein mass spectrometry of both life phases. We found that the proteome was substantially different and characterized novel physiological mechanisms.
description: Version - updated download link no changes made to dataset
DOI: 10.5281/zenodo.10609868
title: Scientific survey data in the Developing Inclusive and Sustainable Creative Economies

description: Data:

Individual-level survey data collected in Finland and Latvia 

Data description: 

These survey data comprise 456 Finnish and 200 Latvian creative professionals who are working in creative sectors (such as audiovisuals, performing arts, design, and media). Data were collected via Internet-aided survey tool during May-June 2021. Due to the lack of publicly available registers, data were collected by applying convenience sampling, and the sample population creative professionals whose contact information was available on various websites. As a sample, these data are not generalizable to larger population of creative professionals.

Usage conditions:

Restricted use due to personal information protection. Data are available upon reasonable request. Anonymized partial data of the DISCE scientific survey may be shared on a case-by-case basis upon request for bona fide researchers with an established scientific record and bona fide organizations. Researchers can submit an expression of interest to contact researcher pekka.stenholm(a)utu.fi
DOI: 10.5281/zenodo.10609867
title: Scientific survey data in the Developing Inclusive and Sustainable Creative Economies

description: Data:

Individual-level survey data collected in Finland and Latvia 

Data description: 

These survey data comprise 456 Finnish and 200 Latvian creative professionals who are working in creative sectors (such as audiovisuals, performing arts, design, and media). Data were collected via Internet-aided survey tool during May-June 2021. Due to the lack of publicly available registers, data were collected by applying convenience sampling, and the sample population creative professionals whose contact information was available on various websites. As a sample, these data are not generalizable to larger population of creative professionals.

Usage conditions:

Restricted use due to personal information protection. Data are available upon reasonable request. Anonymized partial data of the DISCE scientific survey may be shared on a case-by-case basis upon request for bona fide researchers with an established scientific record and bona fide organizations. Researchers can submit an expression of interest to contact researcher pekka.stenholm(a)utu.fi
DOI: 10.5519/qd.14ldd9p7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17615/28cs-kn12
title: US adult cancer misinfo Dec 2021

description: We conducted an online survey about cancer treatment misinformation among US adults in December 2021. Participants were a convenience sample of US adults recruited through the Qualtrics Online Panel platform.
DOI: 10.34740/kaggle/dsv/7539544
title: 2021 World Population (updated daily)
DOI: 10.5517/ccdc.csd.cc2fyz6l
title: CCDC 2263130: Experimental Crystal Structure Determination

description: Related Article: Alexander Röther, Helmar Görls, Robert Kretschmer|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gg3xz
title: CCDC 2277691: Experimental Crystal Structure Determination

description: Related Article: Liam M. Pascoe, Li Feng Lim, Fabian Kallmeier, Nicholas Cox, Penelope J. Brothers, Jamie Hicks|2023|Dalton Trans.|52|15348|doi:10.1039/D3DT02048G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gg3y0
title: CCDC 2277692: Experimental Crystal Structure Determination

description: Related Article: Liam M. Pascoe, Li Feng Lim, Fabian Kallmeier, Nicholas Cox, Penelope J. Brothers, Jamie Hicks|2023|Dalton Trans.|52|15348|doi:10.1039/D3DT02048G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gg403
title: CCDC 2277694: Experimental Crystal Structure Determination

description: Related Article: Liam M. Pascoe, Li Feng Lim, Fabian Kallmeier, Nicholas Cox, Penelope J. Brothers, Jamie Hicks|2023|Dalton Trans.|52|15348|doi:10.1039/D3DT02048G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.