cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dyy8xfvpkf.1
title: Metamorphic proteins at the basis of human autophagy initiation and lipid transfer. Nguyen et al.

description: Autophagy is a conserved intracellular degradation pathway that generates de novo double-membrane autophagosomes to target a wide range of material for lysosomal degradation. In multicellular organisms, autophagy initiation requires the timely assembly of a contact site between the ER and the nascent autophagosome. Here, we report the in vitro reconstitution of a full-length seven-subunit human autophagy initiation super-complex, build on a core complex of ATG13-101 and ATG9. Assembly of this core complex requires the rare ability of ATG13 and ATG101 to switch between distinct folds. The slow spontaneous metamorphic conversion is rate-limiting for the self-assembly of the super-complex. The interaction of the core complex with ATG2-WIPI4 enhances tethering of membrane vesicles and accelerates lipid transfer of ATG2 by both ATG9 and ATG13-101. Our work uncovers the molecular basis of the contact site and its assembly mechanisms imposed by the metamorphosis of ATG13-101 to regulate autophagosome biogenesis in space and time.
DOI: 10.17028/rd.lboro.22657543
title: Supplementary information files for Tracking the solid-state incorporation of Sn into the framework of dealuminated zeolite beta, and consequences for catalyst design

description: Supplementary files for article Tracking the solid-state incorporation of Sn into the framework of dealuminated zeolite beta, and consequences for catalyst design <br> Sn-Beta has emerged as a state-of-the-art catalyst for a range of sustainable chemical transformations. Conventionally prepared by bottom-up hydrothermal synthesis methods, recent research has demonstrated the efficiency of several top-down methods of preparation. One attractive top-down approach is Solid-State Incorporation, where a dealuminated Beta zeolite is physically mixed with a solid Sn precursor, in particular Sn(ii) acetate, prior to heat treatment at 550 °C. This procedure is fast and benign, and metal incorporation requires no solvents and hence produces no aqueous Sn-containing waste streams. Although the performances of these catalysts have been well explored in recent years, the mechanism of heteroatom incorporation remains unknown, and hence, opportunities to improve the synthetic procedure via a molecular approach remain. Herein, we use a range of in situ spectroscopic techniques, alongside kinetic and computational methods, to elucidate the mechanisms that occur during preparation of the catalyst, and then improve the efficacy of the synthetic protocol. Specifically, we find that successful incorporation of Sn into the lattice occurs in several distinct steps, including (i) preliminary coordination of the metal ion to the vacant lattice sites of the zeolite during physical grinding; (ii) partial incorporation of the metal ion into the zeolite framework upon selective decomposition of the acetate ligands, which occurs upon heating the physical mixture in an inert gas flow from room temperature to 550 °C; and (iii) full isomorphous substitution of Sn into the lattice alongside its simultaneous oxidation to Lewis acidic Sn(iv), when the physically mixed material is exposed to air during a short (&lt;1 h) isotherm period. Long isotherm steps are shown to be unnecessary, and fully oxidised Sn(iv) precursors are shown to be unsuitable for successful incorporation into the lattice. We also find that the formation of extra-framework Sn oxides is primarily dependent on the quantity of Sn present in the initial physical mixture. Based on these findings, we demonstrate a faster synthetic protocol for the preparation of Sn-Beta materials via Solid-State Incorporation, and benchmark their catalytic performance for the Meerwein-Ponndorf-Verley transfer hydrogenation reaction and the isomerisation of glucose to fructose. <br>
DOI: 10.5281/zenodo.7827108
title: Brain-inspired multimodal hybrid neural network for robot place recognition

description: Brain-inspired multimodal hybrid neural network for robot place recognition
DOI: 10.5281/zenodo.7825811
title: Brain-inspired multimodal hybrid neural network for robot place recognition

description: Brain-inspired multimodal hybrid neural network for robot place recognition
DOI: 10.5519/qd.71bxbbrg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (121 records)
DOI: 10.5281/zenodo.7845556
title: Dataset of chemicals of emerging concern (CECs) in surface water in the Swedish west coast (Stenungsund)

description: This repository encompasses the environmental concentrations of emerging chemical contaminants (CECs) present in surface water samples obtained from the west coast of Sweden, specifically Stenungsund.
DOI: 10.5281/zenodo.7845557
title: Dataset of chemicals of emerging concern (CECs) in surface water in the Swedish west coast (Stenungsund)

description: This repository encompasses the environmental concentrations of emerging chemical contaminants (CECs) present in surface water samples obtained from the west coast of Sweden, specifically Stenungsund.
DOI: 10.6084/m9.figshare.22128443.v1
title: Supplementary Material for: One heartbeat away from a prediction model for cardiovascular diseases in patients with chronic kidney disease: a systematic review

description: Background: Patients with chronic kidney disease (CKD) have a high risk of cardiovascular disease (CVD). Prediction models, combining clinical and laboratory characteristics, are commonly used to estimate an individual’s CVD risk. However, these models are not specifically developed for patients with CKD and may therefore be less accurate. In this review we aim to give an overview of CVD prognostic studies available, and their methodological quality, specifically for patients with CKD. Methods: MEDLINE was searched for papers reporting CVD prognostic studies in patients with CKD published between 2012 and 2021. Characteristics regarding patients, study design, outcome measurement, and prediction models were compared between included studies. The risk of bias of studies reporting on prognostic factors or the development/validation of a prediction model were assessed with, respectively, the QUIPS and PROBAST tool. Results: In total, 134 studies were included, of which 123 studies tested the incremental value of one or more predictors to existing models or common risk factors, while only 11 studies reported on the development or validation of a prediction model. Substantial heterogeneity in cohort and study characteristics, such as sample size, event rate, and definition of outcome measurements, was observed across studies. The most common predictors were age (87%), sex (75%), diabetes (70%), and estimated glomerular filtration rate (eGFR) (69%). Most of the studies on prognostic factors have methodological shortcomings, mostly due to a lack of reporting on clinical and methodological information. Of the 11 studies on prediction models, six developed and internally validated a model and four externally validated existing or developed models. Only one study on prognostic models showed a low risk of bias and high applicability. Discussion: A large quantity of prognostic studies has been published, yet their usefulness remains unclear due to incomplete presentation, and lack of external validation of prognostic models. Our review can be used to select the most appropriate prognostic model depending on the patient population, outcome, and risk of bias. Future collaborative efforts should aim at improving existing models by externally validating them, evaluate the addition of new predictors, and assessment of the clinical impact.
DOI: 10.5281/zenodo.7843517
title: Genetic diversity patterns of lionfish in the Southwestern Atlantic Ocean

description: <strong>The present study applied genetic markers to describe the early stages of the lionfish bioinvasion of the equatorial Southwestern Atlantic and the Brazilian coast, to determine the origin and diversity of the invading fish, and potential dispersal routes, as well as to help in the management of this ongoing bioinvasion. Mitochondrial and nuclear DNA markers were sequenced in invasive lionfish specimens from the Brazilian coast and compared with <em>Pterois</em> spp. sequences available from the public NCBI and BOLD databases for identification purposes and to better elucidate the invasion and establishment of lionfish in the Southwestern Atlantic.</strong>
DOI: 10.5281/zenodo.7843516
title: Genetic diversity patterns of lionfish in the Southwestern Atlantic Ocean

description: <strong>The present study applied genetic markers to describe the early stages of the lionfish bioinvasion of the equatorial Southwestern Atlantic and the Brazilian coast, to determine the origin and diversity of the invading fish, and potential dispersal routes, as well as to help in the management of this ongoing bioinvasion. Mitochondrial and nuclear DNA markers were sequenced in invasive lionfish specimens from the Brazilian coast and compared with <em>Pterois</em> spp. sequences available from the public NCBI and BOLD databases for identification purposes and to better elucidate the invasion and establishment of lionfish in the Southwestern Atlantic.</strong>
DOI: 10.25824/redu/mhjkk7
title: Association of Behavioral Risk Factors for Chronic Diseases With Physical and Mental Health in European Adults Aged 50 Years or Older, 2004–2005.pdf
DOI: 10.25824/redu/e9sqhj
title: _JOANNA BRIGGS INSTITUTE.pdf
DOI: 10.25824/redu/9bokth
title: _ESTRATEGIA DE BUSCA.pdf
DOI: 10.25824/redu/0zty7h
title: Chronic conditions, disability, and quality of life in older adults with multimorbidity in Spain.pdf
DOI: 10.25824/redu/5g9o22
title: _PRISMA_2020.pdf
DOI: 10.25824/redu/widdez
title: Treatment adherence as a mediator of blood pressure control in Chinese older adults with depression.pdf
DOI: 10.25824/redu/r8yozy
title: Integration of Depression and Hypertension.pdf
DOI: 10.25824/redu/0tgjkr
title: Depressão em idosos inscritos no Programa de Controle de hipertensão arterial e diabetes mellitus.pdf
DOI: 10.25824/redu/yhai7r
title: Implementing Collaborative Care for Older People with Comorbid Hypertension and Depression in Rural China.pdf
DOI: 10.25824/redu/sbdibb
title: Saúde mental de idosos hipertensos na atenção primária à saúde: revisão integrativa

description: Objetivo: sistematizar o conhecimento produzido sobre o cuidado em saúde mental ao idoso hipertenso na atenção primária à saúde. Método: trata-se de um estudo de revisão integrativa de literatura, seguindo as recomendações do Joanna Briggs Institute. Resultados: Os estudos incluídos na amostra possuem amplitude global e os achados foram agrupados em eixos em duas categorias temáticas: cuidados integrados e qualidade de vida relacionada à saúde. Conclusão: estas estratégias ainda apresentam alguns entraves, no entanto, este estudo vem para corroborar a importância da consolidação desse cuidado, que acontece na APS e tem desfechos em todos os níveis de atenção
DOI: 10.5066/p9bxkoi2
title: White-tailed deer necropsy data from Wisconsin, 2017-2021

description: Necropsy data collected from naturally-occurring white-tailed deer mortalities in southwestern Wisconsin from 2017-2021. Hunter-harvest mortalities are not included.
DOI: 10.6084/m9.figshare.22240717.v1
title: Supplementary Material for: High Preoperative Platelet to Lymphocyte Ratio is Associated with a Greater Risk of Postoperative Complications and Hematogenous Recurrences in Esophageal Squamous Cell Carcinoma Patients Receiving Neoadjuvant Treatment

description: Background. Neoadjuvant treatment is currently the gold standard for advanced esophageal squamous cell carcinoma (ESCC). Several studies have examined the value of blood count-based indexes for predicting short- and long-term outcomes after esophagectomy for ESCC, but the relative predictive value of pretreatment, preoperative, and postoperative indexes has not yet been examined. Methods. This study included 320 patients with thoracic ESCC who underwent subtotal esophagectomy after neoadjuvant chemotherapy or chemoradiotherapy at our institution. A total of 19 candidate blood parameters were measured before neoadjuvant treatment as well as preoperatively and postoperatively. The ability of the parameters to predict postoperative complications, overall survival (OS), and relapse-free survival (RFS) were assessed using receiver operating characteristic (ROC) curve analysis and Cox regression analysis. Results. ROC curve analysis indicated that the preoperative platelet to lymphocyte ratio (PLR) had the best predictive value with an optimal cutoff value of 166. Patients with high preoperative PLR (≥166) had significantly shorter OS and RFS and significantly higher incidences of hematogenous recurrence and postoperative pneumonia compared with patients with low preoperative PLR (&lt;166). In multivariate analysis, high preoperative PLR and high preoperative serum carcinoembryonic antigen level were independent predictors of poor prognosis. Conclusions. Preoperative PLR is a good predictor of short- and long-term prognosis in patients with advanced ESCC who receive neoadjuvant treatment followed by radical resection.
DOI: 10.35078/zf93jo
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Diamantina | Município: Cachoeira da Prata

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5066/p90s15lr
title: In-vitro Propagation and Fish Assessments to Inform Restoration of Dwarf Wedgemussel (Alasmidonta Heterodon)

description: The dwarf wedgemussel (Alasmidonta heterodon) is a federally endangered freshwater mussel that once ranged from New Brunswick to North Carolina, but now only exists in isolated populations throughout its diminished range. Laboratory propagation in conjunction with augmentation or reintroduction is considered a critical component of dwarf wedgemussel restoration. The presented data aimed to I) develop in-vitro propagation techniques including methods to minimize microbial contamination for two Alasmidonta species and II) compile and assess critical fish assemblage information at existing dwarf wedgemussel presence and absence locations to inform future restoration activities. Results from this project will be used in conjunction with habitat and genetic information to inform future restoration plans in the northeast and add to the growing body of literature on in-vitro propagation of freshwater mussels.
DOI: 10.5066/p9aexw1z
title: American alligator demographic and harvest data from Georgetown County, South Carolina, 1979-2017

description: The American alligator (Alligator mississippiensis) is a species of ecological and economic importance in the southeastern United States. Within South Carolina, alligators are subject to private and public harvest programs, as well as nuisance removal. These management activities can have different impacts across alligator size classes that may not be apparent through widely-used monitoring techniques such as nightlight surveys. We synthesized multiple datasets within an integrated population model (IPM) to estimate size class-specific survival and abundance estimates, that would not be estimable through separate, non-integrated modeling frameworks. The IPM framework included a multistate mark-recapture-recovery model that used mark-recapture-recovery data from the Tom Yawkey Wildlife Center and growth transition probabilities that were estimated outside of the IPM framework. The IPM also included a state-space count model, which used nightlight survey counts of alligtaors from two survey routes: 1) Great Pee Dee and Waccamaw Rivers; and 2) South Santee Rivers. The IPM modeling framework also used mean clutch size data from the Tom Yawkey Wildlife Center and public and private harvest data within the state model. Lastly, we evaluated the effects of capture effort on capture probability, as well as the effects of water temperature and relative water level on count detection probability, and provide all covariate datasets. Our IPM framework determined that size class-specific survival rates were relatively high for all non-hatchling size classes, and abundance trends differed between the two nightlight survey sites.
DOI: 10.5066/p97dj8e6
title: Distribution Models Predicting Groundwater Influenced Ecosystems in the Northeastern United States

description: Globally, groundwater dependent ecosystems (GDEs) are increasingly vulnerable to groundwater extraction and land use practices. Groundwater supports these ecosystems by providing inflow, which can maintain water levels, water temperature, and chemistry necessary to sustain the biodiversity that they support. Many aquatic systems receive groundwater as a portion of base flow, and in some systems (e.g., springs, seeps, fens) the connection with groundwater is significant and important to the system’s integrity and persistence. Groundwater management decisions for human use may not consider ecological effects of those actions on GDEs, which rely on groundwater to maintain ecological function. This disconnect between management and ecological needs can affect groundwater resources that have repercussions for both the GDEs and human populations that rely on them. This disparity can be attributed in part to a lack of information about where these systems are found and relationships with the surrounding landscape that may influence the environmental conditions and associated biodiversity. Knowledge of occurrence of GDEs in the northeastern United States is incomplete. As expanding urban areas alter the regional hydrology, threats to groundwater resources may increase. An objective of our research is to predict the occurrence of groundwater influenced ecosystems (GIEs) across the northeastern United States. We are applying geographically referenced information about known GIEs across two ecologically distinct EPA Level II Ecoregions (Atlantic Highlands, Mixed Woods Plains) in the northeastern United States using correlative distribution modeling methods [Generalized Linear Models (GLM), Generalized Additive Models (GAM), Maximum Entropy (MaxEnt), Random Forest] to produce a landscape scale habitat suitability maps for GIEs. We then evaluated the predictive outputs and ensemble model predictions to create consensus models for each Ecoregion. Knowledge of GIE locations and their contributing watersheds across this region can inform land management decisions, which can enhance conservation of these systems.
DOI: 10.5066/p90a4ugj
title: Daily ages of young-of-year Silver Chub from western Lake Erie, 2017-2018

description: Daily ages of young-of-year Silver Chub were estimated from counts of rings in lapilli otoliths. Lapilli were mounted to glass slides with thermoplastic cement and sanded to the core with 2000 grit sandpaper to expose daily rings. To improve clarity, sanded otoliths were polished with 0.3 μm alumina powder and a polishing cloth prior to viewing. To estimate daily age, counts of rings in otoliths were made under 100-200 magnification three times by one biologist with more than two decades of experience analyzing daily rings in otoliths. For each round of counts, lapilli were viewed in random order and without knowledge of fish length. For each otolith, we calculated the mean ring count and all pairwise differences. We used the average (rounded up) of the two ring counts that were closest to each other and within 10% of the mean count as the estimated age. If all pairwise differences were greater than 10% of the mean ring count, we estimated ring count a fourth time and calculated the new pairwise differences. If there were no pairs within 10% of the mean ring count after a fourth count, we eliminated the otolith from further analyses.
DOI: 10.5066/p9bz5tl9
title: Interannual Breeding Movements of Brown Pelicans in the South Atlantic Bight

description: This dataset contains locations acquired from GPS-tagged Brown Pelicans in the South Atlantic Bight. Locations correspond to the movements of pelicans tracked for greater than 1 reproductive attempt, and include only locations from May - July of each year, with the goal of identifying likely nest locations using GPS data.
DOI: 10.5066/p9fek4n6
title: Wyoming crayfish assemblages 1969 - 2020

description: Crayfish have experienced extensive community reorganization as a result of global change, with some species becoming globally invasive while others have become rare or extinct. We combined historical and contemporary sampling data to determine temporal trends of crayfish assemblages of Wyoming, United States (1969–2020). The dataset includes previous statewide surveys and more narrow studies focusing on locations like Yellowstone National Park, individual native species, or newly discovered populations of invasive Faxonius rusticus. It also includes data from a 2020 statewide sampling effort of crayfish assemblages at 289 sites between April and November 2020.
DOI: 10.5066/p92sl92p
title: Point locations and species and behavioral identifications of colonial nesting seabirds on Maine's coastal islands interpreted from 2019 plane-based imagery

description: This dataset includes XY coordinates and species and behavioral observations of birds detected in aerial imagery captured over coastal islands along Maine's coast during 30 May. - 3 June 2019. The Partenavia P.68 Observer plane flew over 268 islands within the Gulf of Maine (GOM). The plane flew at an altitude of 310 m above ground level and was equipped with a PhaseOne iXU-RS1000 (100 megapixel) multispectral camera and 70 mm lens to capture 4-band (red, green, blue, (RGB) and near-infrared (NIR) light) imagery with a ground sampling distance of 2 cm/px. Timing for the aerial image collection was selected to reflect peak nesting periods for the focal species (Herring Gull, Great Black-backed Gull, Double-crested Cormorant, Common Eider, and Tern spp.), during which one parent is typically present on the nest. Imagery was captured during daylight in clear weather (i.e., no rain or high winds) for ten separate surveys beginning at different times and with various flight path extents. Although the target was colonial nesting seabirds, any birds that could be identified were noted in the dataset. All images were orthorectified, georeferenced, and mosaicked into images spanning one or more islands. Three observers reviewed the images, identified detected birds to species and behavior, and reconciled any differences. The dataset includes the detections recorded by each observer and the reconciled species and behavior identification. Summaries of the methods and final counts are presented in two theses: Kline, Logan R. 2022. Characteristics contributing to uncertainty in image-based artificial intelligence classifications of colonial nesting birds. M.S. Thesis, Ecology and Environmental Sciences, University of Maine, Orono. 118 pp. Lewis, Meredith A. 2022. A bird's eye view: observer uncertainty in aerial image counts of colonial seabirds and an assessment of the status of coastal island gull and cormorant populations. M.S. Thesis, Ecology and Environmental Sciences, University of Maine, Orono. 113 pp.