cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pcpwbn
title: Occurrence Download

description: A dataset containing 589493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Python molurus, Python regius, Quadrastichus erythrinae, Radix labiata, Radopholus similis, Raillietiella indica, Ramphotyphlops braminus, Rangia cuneata, Raoiella indica, Rapana venosa, Rathkea octopunctata, Rattus exulans, Rattus norvegicus, Rattus rattus, Rattus, Rattus tanezumi, Reesa vespulae, Reticulitermes flavipes, Reticulitermes lucifugus, Reticulitermes urbis)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 589493 records from 1192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000158-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caeq4n
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gladiolus grandiflorus Andrews"
 ]
}

 The dataset includes 199 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023066-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrj9t4
title: Occurrence Download

description: A dataset containing 1118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Specimen, Occurrence evidence, Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Apodemus Kaup, 1829",
 "Year 1045-2025"
 ]
}

 The dataset includes 1118 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023068-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bd7d6p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius amatolicus (Skelton, 1990)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1332 -20.158,25.5395 -23.2724,25.5395 -24.0715,30.5701 -24.0715,30.5701 -20.3186,29.6496 -19.6123,28.947 -19.4003,28.1821 -19.4609,27.6072 -19.7214,27.1332 -20.158))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023069-250525065834625/datasets/export for details.
DOI: 10.15468/dl.c2rk74
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence, Material sample)",
 "Country is one of (Colombia, Brazil, Venezuela (Bolivarian Republic of), French Guiana, Guyana)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Campylocia Needham & Murphy, 1924"
 ]
}

 The dataset includes 64 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023112-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8yn5y
title: Occurrence Download

description: A dataset containing 869 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry MULTIPOLYGON(((-71.00991 -34.53134,-71.00795 -34.53089,-71.00787 -34.52764,-71.00995 -34.5261,-71.01328 -34.5215,-71.01865 -34.52405,-71.02143 -34.53188,-71.02923 -34.5406,-71.02645 -34.54097,-71.01562 -34.53386,-71.00991 -34.53134)),((-71.22309 -34.58277,-71.22609 -34.58552,-71.2244 -34.58636,-71.22294 -34.58978,-71.2243 -34.59205,-71.22439 -34.59529,-71.21897 -34.59577,-71.21417 -34.59868,-71.20377 -34.59295,-71.19432 -34.58892,-71.19183 -34.58858,-71.19481 -34.58487,-71.20799 -34.58352,-71.21483 -34.58545,-71.21864 -34.5836,-71.22309 -34.58277)),((-71.07927 -34.54551,-71.08625 -34.5438,-71.0922 -34.54161,-71.09834 -34.53829,-71.10246 -34.54052,-71.09877 -34.54447,-71.10179 -34.55046,-71.10653 -34.55195,-71.10798 -34.55297,-71.10869 -34.56002,-71.10832 -34.5637,-71.09865 -34.5656,-71.08968 -34.56531,-71.0847 -34.56688,-71.06849 -34.55792,-71.06693 -34.55578,-71.06921 -34.55015,-71.06919 -34.54934,-71.07017 -34.54932,-71.07062 -34.54888,-71.07927 -34.54551)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 869 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023113-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjh7rb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022916-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkvwpa
title: Occurrence Download

description: A dataset containing 1893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juglans mandshurica",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1893 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000242-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.da24vz
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juglans mandshurica",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000240-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6bnxq
title: Occurrence Download

description: A dataset containing 43638 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platanus occidentalis"
 ]
}

 The dataset includes 43638 records from 406 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000236-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/pwua7t
title: Replication Data for: "Is policy more responsive to the affluent because they have better opinions? An empirical test"

description: Replication data and R scripts.
DOI: 10.15468/dl.4k6t9b
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((105.63971 32.89002,93.59812 26.64623,95.31527 8.4944,104.23498 6.82196,120.06745 18.86356,121.7399 29.5672,113.60067 33.46957,105.63971 32.89002))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dalbergia ovata Graham ex Benth."
 ]
}

 The dataset includes 134 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022719-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/102664
title: Supporting data for "Image segmentation of treated and untreated tumor spheroids by Fully Convolutional Networks"

description: Multicellular tumor spheroids (MCTS) are advanced cell culture systems for assessing the impact of combinatorial radio(chemo) therapy as they exhibit therapeutically relevant in-vivo-like characteristics from 3D cell-cell and cell-matrix interactions to radial pathophysiological gradients. State-of-the-art assays quantify long-term curative endpoints based on collected brightfield image time series from large treated spheroid populations per irradiation dose and treatment arm. This analyses require laborious spheroid segmentation of up to 100.000 images per treatment arm to extract relevant structural information from the images, e.g., diameter, area, volume and circularity. While several image analysis algorithms are available for spheroid segmentation, they all focus on compact MCTS with clearly distinguishable outer rim throughout growth. However, they often fail for the common case of treated MCTS, which may partly be detached and destroyed and are usually obscured by dead cell debris. <br>To address these issues, we successfully train two Fully Convolutional Networks, UNet and HRNet, and optimize their hyperparameters to develop an automatic segmentation for both untreated and treated MCTS. We extensively test the automatic segmentation on larger, independent datasets and observe high accuracy for most images with Jaccard indices around 90%. For cases with lower accuracy, we demonstrate that the deviation is comparable to the inter-observer variability. We also test against previously published datasets and spheroid segmentations. <br>The developed automatic segmentation cannot only be used directly but also integrated into existing spheroid analysis pipelines and tools. This facilitates the analysis of 3D spheroid assay experiments and contributes to the reproducibility and standardization of this preclinical <i>in vitro</i> model.
DOI: 10.25574/28848
title: Chandra X-ray Observatory ObsId 28848

description: Mapping Nuclear Activity in a Massive Large Scale Structure (protocluster) at z~2.24
DOI: 10.25574/28850
title: Chandra X-ray Observatory ObsId 28850

description: Mapping Nuclear Activity in a Massive Large Scale Structure (protocluster) at z~2.24
DOI: 10.15468/dl.padjbd
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Edmundoa lindenii (Regel) Leme"
 ]
}

 The dataset includes 517 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023011-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6naz4
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphecodes lautipennis Cockerell, 1908"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023012-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr6ej6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UWBM Ornithology Collection",
 "Preparations is tissue",
 "PublishingOrg is 06fcbbf0-0562-11d8-b851-b8a03c50a862",
 "TaxonKey is Strix varia Barton, 1799"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023010-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35qupx
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heliconia sclerotricha Abalo & G.Morales"
 ]
}

 The dataset includes 32 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023170-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15603378
title: Bioethanol manufacturing from industrial olive pomace slurry through integrated hydrothermal carbonisation and non-conventional yeast-based fermentation processes
DOI: 10.5281/zenodo.15603379
title: Bioethanol manufacturing from industrial olive pomace slurry through integrated hydrothermal carbonisation and non-conventional yeast-based fermentation processes
DOI: 10.5281/zenodo.15588125
title: GenBank Accession Numbers of Survivors and colonizers: contrasting biogeographic histories reconciled in the Antarctic freshwater copepod Boeckella poppei

description: This dataset contains GenBnak accession numbers for 75 COX1, 6 ITS and 2 28S sequences obtained from Boeckella poppei. Locality, latitude and longitude, and isolate code are also included.
description: Two main hypotheses have been proposed to explain the contemporary distribution of Antarctic terrestrial biota. We assess whether the current distribution of maritime Antarctic populations of the freshwater copepod Boeckella poppei is the result of (1) a post-Last Glacial Maximum (LGM) colonization, or whether (2) the species survived in regional glacial refugia throughout the LGM and earlier glaciations. Using 438 specimens from 34 different sampling sites across Southern South America, South Georgia, South Orkney Islands, South Shetland Islands, and the Antarctic Peninsula, we analyzed mitochondrial and nuclear sequences to uncover patterns of genetic diversity and population structure. We also performed median-joining haplotype network, phylogenetic reconstruction, and divergence time analyses. Finally, we evaluated past demographic changes and historical scenarios using the Approximate Bayesian Computation (ABC) method. Our data support the existence of two clades with different and contrasting biogeographic histories. The first clade has been present in maritime Antarctica since at least the mid-Pleistocene, with the South Orkney Islands the most likely refugial area. The second clade has a broader distribution including southern South America, South Georgia, South Shetland Islands, and the Antarctic Peninsula. The ABC method identified long-distance dispersal (LDD) colonization event(s) from southern South America to South Georgia and the maritime Antarctic after the LGM deglaciation, supporting more recent colonization of Antarctic locations. The current Antarctic and sub-Antarctic distribution of B. poppei is likely derived from two independent biogeographic events. The combination of both (1) post-LGM colonization from southern South America and (2) longer-term persistence in in situ regional refugia throughout glacial periods challenges current understanding of the biogeographic history of Antarctic freshwater biota. Re-colonization of ice-impacted Antarctic areas would have occurred following a LDD and Establishment model, pointing to the existence of possible post-dispersal barriers, despite widely assumed high passive dispersal capacity in freshwater invertebrates.
DOI: 10.5281/zenodo.15588126
title: GenBank Accession Numbers of Survivors and colonizers: contrasting biogeographic histories reconciled in the Antarctic freshwater copepod Boeckella poppei

description: This dataset contains GenBnak accession numbers for 75 COX1, 6 ITS and 2 28S sequences obtained from Boeckella poppei. Locality, latitude and longitude, and isolate code are also included.
description: Two main hypotheses have been proposed to explain the contemporary distribution of Antarctic terrestrial biota. We assess whether the current distribution of maritime Antarctic populations of the freshwater copepod Boeckella poppei is the result of (1) a post-Last Glacial Maximum (LGM) colonization, or whether (2) the species survived in regional glacial refugia throughout the LGM and earlier glaciations. Using 438 specimens from 34 different sampling sites across Southern South America, South Georgia, South Orkney Islands, South Shetland Islands, and the Antarctic Peninsula, we analyzed mitochondrial and nuclear sequences to uncover patterns of genetic diversity and population structure. We also performed median-joining haplotype network, phylogenetic reconstruction, and divergence time analyses. Finally, we evaluated past demographic changes and historical scenarios using the Approximate Bayesian Computation (ABC) method. Our data support the existence of two clades with different and contrasting biogeographic histories. The first clade has been present in maritime Antarctica since at least the mid-Pleistocene, with the South Orkney Islands the most likely refugial area. The second clade has a broader distribution including southern South America, South Georgia, South Shetland Islands, and the Antarctic Peninsula. The ABC method identified long-distance dispersal (LDD) colonization event(s) from southern South America to South Georgia and the maritime Antarctic after the LGM deglaciation, supporting more recent colonization of Antarctic locations. The current Antarctic and sub-Antarctic distribution of B. poppei is likely derived from two independent biogeographic events. The combination of both (1) post-LGM colonization from southern South America and (2) longer-term persistence in in situ regional refugia throughout glacial periods challenges current understanding of the biogeographic history of Antarctic freshwater biota. Re-colonization of ice-impacted Antarctic areas would have occurred following a LDD and Establishment model, pointing to the existence of possible post-dispersal barriers, despite widely assumed high passive dispersal capacity in freshwater invertebrates.
DOI: 10.6084/m9.figshare.29092604
title: EC 5612 Proposal

description: There are two documents available here. First, the text of my EC5612 Research Proposal. Second a slideshow that gives a step by step guide of how to access the data described in the proposal.
DOI: 10.6084/m9.figshare.29092604.v2
title: EC 5612 Proposal

description: This slideshow gives a step by step guide of how to access the data described in the EC5612 research proposal by Sebastian Dooley
DOI: 10.6084/m9.figshare.29092604.v3
title: EC 5612 Proposal

description: There are two documents available here. First, the text of my EC5612 Research Proposal. Second a slideshow that gives a step by step guide of how to access the data described in the proposal.
DOI: 10.15468/dl.v396ha
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cephalocereus euphorbioides (Haw.) Britton & Rose"
 ]
}

 The dataset includes 103 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022800-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ae63ux
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engraulicypris brevianalis (Boulenger, 1908)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((32.064 -28.9416,32.4847 -28.5786,30.5701 -28.5786,30.5701 -30.7329,30.6252 -30.6659,31.4179 -29.4257,31.8178 -29.0299,32.064 -28.9416))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022961-250525065834625/datasets/export for details.
DOI: 10.15468/dl.u2ffss
title: Occurrence Download

description: A dataset containing 3911 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iochroma arborescens (L.) J.M.H.Shaw"
 ]
}

 The dataset includes 3911 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023211-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5b8tg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius argenteus (Günther, 1868)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023213-250525065834625/datasets/export for details.
DOI: 10.15468/dl.qk5zky
title: Occurrence Download

description: A dataset containing 5100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asimina parviflora"
 ]
}

 The dataset includes 5100 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000198-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwy36s
title: Occurrence Download

description: A dataset containing 824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Michelia figo"
 ]
}

 The dataset includes 824 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000200-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16966299
title: Isotope data for split-root study
DOI: 10.57833/cidacs/emd2ls
title: Sistema de informações sobre mortalidade vinculado a extração da coorte de cem milhões de brasileiros e ao sistema de informações de nascidos vivos

description: Conjunto de dados produzido e utilizado com a finalidade de alcance dos objetivos de “Estimar o efeito de fatores socioeconômicos, de pré-natal e características maternas no peso ao nascer, prematuridade, morte fetal, data/causa da morte nos cinco anos de vida e crescimento durante os primeiros cinco anos de vida” e “Estimar o impacto do programa Bolsa Família no peso ao nascer, prematuridade, morte fetal, mortalidade por idade e suas causas no crescimento infantil durante os primeiros cinco anos de vida em subpopulações e períodos.”, ambos componentes do projeto intitulado “Avaliando o impacto de fatores e intervenções sociais no crescimento e desenvolvimento saudáveis: coorte de 100 milhões de brasileiros”.