cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13635431
title: 30-arc second spatial resolution of urban geometric datasets with global coverage

description: Grid-based building morphological parameters with global coverage at 30-arc second spatial resolution are currently available in GeoTIFF format. Provided datasets contains three-building morphological parameters (the mean building height <i>Have</i>, plan area density <i>PAD</i> and frontal area density <i>FAD</i>) and two-aerodynamic parameters (aerodynamic roughness length <i>z<sub>0</sub></i> and zero-place displacement <i>d</i>) and sky-view factor (<i>svf</i>).The building morphological datasets were estimated from the global databases such as population, nighttime light, impervious surface area and gross domestic products. Two aerodynamic parameters and sky-view factors are calculated using the empirical equations discussed by Kanda et al. (2013) and Kanda et al. (2005), respectively.<br><b>1. Raster files</b>: (parameter name)_2013.tifFormat: GeoTIFFProjection: WGS 1984 World Mercator projectionSpatial resolution: 30-arc second<br>Data list: <i>Have_2013.tif</i>, <i>PAD_2013.tif</i>, <i>FAD_2013.tif</i>, <i>d_2013.tif</i>, <i>z0_2013.tif</i>, <i>svf_2013.tif</i><br><b>2. Building Original Data</b>Format: Microsoft Excel Workbook<i>Original_building_data.xlsx</i> contains observed building morphological parameters calculated from three- and two-dimensional building databases, and global databases (impervious surface area <i>ISA</i> and population density adjusted by nighttime light <i>PopdenVIIRS</i>) at each grid code.<br><i>Validation_analysis.xlsx</i> contains building morphological parameters calculated from three-dimensional building database (observed) and parameters estimated from global databases (predicted) at one-km spatial resolution in Berlin, Singapore and Osaka.<i>Additional_validation_UScities.xlsx</i> contains building morphological parameters at one-km resolution by NUDAPT database (observed) and estimated from global databases (predicted) for 42 US cities. We used this data in the Supplementary Discussion. <i>Megacities_statistic.xlsx</i> contains <i>GDP<sub>city</sub></i>, the maximum, minimum, mean value and standard deviation of each predicted building morphological parameters at 37 megacities. <br><br><b>3. Source Code</b>Programming language 1: Python site package in ArcGIS v10.3.1<i>Calculate_parameters.py</i> contains code for calculating observed building morphological parameters from grid-based two- and three-dimensional building database input. We recommend using this script after using the Split By Attributing Tools to convert a fishnet building footprint map into multiple grids.<i>Modifying_population_by_nightlight.py</i> contains code for adjusted population density by nighttime light at each grid.Programming language 2: Python v2.7<br><i>Converting_grids.py</i> contains code for converting grid-based population density adjusted by nighttime light into a global map. This source code is used after running <i>Modifying_population_by_nightlight.py</i>. <br>
DOI: 10.21227/rp3f-f891
title: VIG-Track Dataset

description: Human intention is an internal, mental characterization for acquiring desired information. Frominteractive interfaces, containing either textual or graphical information, intention to perceive desiredinformation is subjective and strongly connected with eye gaze. In this work, we determine such intention byanalyzing real-time eye gaze data with a low-cost regular webcam. We extracted unique features (e.g.,Fixation Count, Eye Movement Ratio) from the eye gaze data of 31 participants to generate the datasetcontaining 124 samples of visual intention for perceiving textual or graphical information, labeled as eitherTEXT or IMAGE, having 48.39% and 51.61% distribution, respectively. Using this dataset, we analyzed 5classifiers, including Support Vector Machine (SVM) (Accuracy: 90.13%).
DOI: 10.6084/m9.figshare.17067599
title: Supplementary Material for: First-Line Immune Checkpoint Inhibitor-Based Sequential Therapies for Advanced Hepatocellular Carcinoma: Rationale for Future Trials

description: <b><i>Introduction:</i></b> Atezolizumab (ATEZO) plus bevacizumab (BEVA) represents the new standard of care for the treatment of advanced hepatocellular carcinoma (HCC). However, the choice of the second-line treatment after the failure of immunotherapy-based first-line remains elusive. Taking into account the weaknesses of the available evidence, we developed a simulation model based on available phase III randomized clinical trials (RCTs) to identify optimal risk/benefit sequential strategies. <b><i>Methods:</i></b> A Markov model was built to estimate the overall survival (OS) of sequential first- and second-line systemic treatments. Sequences starting with first-line ATEZO plus BEVA followed by 5 second-line treatments (sorafenib [SORA], lenvatinib [LENVA], regorafenib, cabozantinib, and ramucirumab) were compared. The probability of transition between states (initial treatment, cancer progression, and death) was derived from RCTs. Life-year gained (LYG) was the main outcome. Rates of severe adverse events (SAEs) (≥ grade 3) were calculated. The incremental safety-effectiveness ratio (ISER) was calculated as the difference in probability of SAEs divided by LYG between the 2 most effective sequences. <b><i>Results:</i></b> ATEZO plus BEVA followed by LENVA (median OS, 24 months) or SORA (median OS, 23 months) was the most effective sequence, producing a LYG of 0.50 and 0.42 year, respectively. ATEZO plus BEVA followed by SORA was the safest sequence (SAEs 63%). At a willingness-to-risk threshold of 10% of SAEs for LYG, ATEZO plus BEVA followed by second-line SORA was favored in 72% of cases, while at a threshold of 30% of SAEs for LYG, ATEZO plus BEVA followed by second-line LENVA was favored in 69% of cases. <b><i>Conclusion:</i></b> Our simulation model provides a strong rationale to support ongoing trials evaluating second-line tyrosine-kinase inhibitors after first-line ATEZO plus BEVA. Future evidence from ongoing RCTs and prospective real-world studies are needed to prove the net health benefit of sequential treatment options for advanced HCC.
DOI: 10.6084/m9.figshare.15141849
title: Supplementary Material for: Functional Active Microbiome in Supragingival Biofilms in Health and Caries

description: Medicine
DOI: 10.3886/e116115v1-102321
title: Replication data for: Why Don't the Poor Save More? Evidence from Health Savings Experiments

description: Using data from a field experiment in Kenya, we document that providing individuals with simple informal savings technologies can substantially increase investment in preventative health and reduce vulnerability to health shocks. Simply providing a safe place to keep money was sufficient to increase health savings by 66 percent. Adding an earmarking feature was only helpful when funds were put toward emergencies, or for individuals that are frequently taxed by friends and relatives. Group-based savings and credit schemes had very large effects.
DOI: 10.5281/zenodo.5720264
title: Graph Data: Hydrological impact of widespread afforestation in Great Britain using a large ensemble of modelled scenarios

description: Data used for creating the figures in the paper: Hydrological impact of widespread afforestation in Great Britain using a large ensemble of modelled scenarios. It contains the flow exceedances (as mm day<sup>-1</sup>), flow duration slope, median elasticity and runoff ratio for the different afforestation scenarios. Also included is the information on the changes of broadleaf afforestation. If you have any questions, please email marcus.buechel@ouce.ox.ac.uk.
DOI: 10.5281/zenodo.5720263
title: Graph Data: Hydrological impact of widespread afforestation in Great Britain using a large ensemble of modelled scenarios

description: Data used for creating the figures in the paper: Hydrological impact of widespread afforestation in Great Britain using a large ensemble of modelled scenarios. It contains the flow exceedances (as mm day<sup>-1</sup>), flow duration slope, median elasticity and runoff ratio for the different afforestation scenarios. Also included is the information on the changes of broadleaf afforestation. If you have any questions, please email marcus.buechel@ouce.ox.ac.uk.
DOI: 10.18112/openneuro.ds003927.v1.0.0
title: Informative neural representations of unseen contents during higher-order processing in human brains and deep artificial networks
DOI: 10.15161/oar.it/74275
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.17067721.v1
title: An exploratory text analysis of the autophagy research field

description: After its discovery in the 1950 s, the autophagy research field has seen its annual number of publications climb from tens to thousands. The ever-growing number of autophagy publications is a wealth of information but presents a challenge to researchers, especially those new to the field, who are looking for a general overview of the field to, for example, determine current topics of the field or formulate new hypotheses. Here, we employed text mining tools to extract research trends in the autophagy field, including those of genes, terms, and topics. The publication trend of the field can be separated into three phases. The exponential rise in publication number began in the last phase and is most likely spurred by a series of highly cited research papers published in previous phases. The exponential increase in papers has resulted in a larger variety of research topics, with the majority involving those that are directly physiologically relevant, such as disease and modulating autophagy. Our findings provide researchers a summary of the history of the autophagy research field and perhaps hints of what is to come. <b>Abbreviations:</b> 5Y-IF: 5-year impact factor; AIS: article influence score; EM: electron microscopy; HGNC: HUGO gene nomenclature committee; LDA: latent Dirichlet allocation; MeSH: medical subject headings; ncRNA: non-coding RNA
DOI: 10.6084/m9.figshare.17067721
title: An exploratory text analysis of the autophagy research field

description: After its discovery in the 1950 s, the autophagy research field has seen its annual number of publications climb from tens to thousands. The ever-growing number of autophagy publications is a wealth of information but presents a challenge to researchers, especially those new to the field, who are looking for a general overview of the field to, for example, determine current topics of the field or formulate new hypotheses. Here, we employed text mining tools to extract research trends in the autophagy field, including those of genes, terms, and topics. The publication trend of the field can be separated into three phases. The exponential rise in publication number began in the last phase and is most likely spurred by a series of highly cited research papers published in previous phases. The exponential increase in papers has resulted in a larger variety of research topics, with the majority involving those that are directly physiologically relevant, such as disease and modulating autophagy. Our findings provide researchers a summary of the history of the autophagy research field and perhaps hints of what is to come. <b>Abbreviations:</b> 5Y-IF: 5-year impact factor; AIS: article influence score; EM: electron microscopy; HGNC: HUGO gene nomenclature committee; LDA: latent Dirichlet allocation; MeSH: medical subject headings; ncRNA: non-coding RNA
DOI: 10.5517/ccdc.csd.cc1z0c4h
title: CCDC 1817596: Experimental Crystal Structure Determination

description: Related Article: Ouahida Zeghouan, Mahesha, Seifeddine Sellami, Imad Kashi, Chahra Bouchameni, N.K. Lokanath|2021|J.Mol.Struct.|1250|131658|doi:10.1016/j.molstruc.2021.131658
DOI: 10.5519/qd.5j7ub3hn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (798 records)
DOI: 10.25721/nvdx-dt42
title: Passage d'un troupeau de bovins transhumants
DOI: 10.14768/2d7688ba-2e5f-473c-8e03-763e93f4bd6b
title: NOMAD-LNO calibration - temperature correction

description: NOMAD LNO calibration coefficient from the article Cruz Mermy et al., Planetary and Space Science, 2021 A1, B1 : calibration coefficients for nominal temperature sensor A2, B2 : calibration coefficients for redondant temperature sensor Diffraction_Order : diffraction order
DOI: 10.6084/m9.figshare.17067773
title: Supplementary Material for: Inverse Association of Serum Adipsin with the Remission of Nonalcoholic Fatty-Liver Disease: A 3-Year Community-Based Cohort Study

description: <b><i>Purposes:</i></b> Adipokine alterations contribute to the development and remission of nonalcoholic fatty-liver disease (NAFLD). Adipsin is one of the most abundant adipokines and is almost exclusively produced by adipocytes. However, data on adipsin in human NAFLD are limited and controversial. We performed this study to investigate the association between adipsin and the remission of NAFLD in middle-aged and elderly Chinese adults. <b><i>Methods:</i></b> Whether adipsin is associated with the remission of NAFLD in a 3-year community-based prospective cohort study was investigated. Baseline levels of adipsin were measured in serum samples collected from 908 NAFLD participants. NAFLD was diagnosed using abdominal ultrasonography. Logistic regression analysis and a multiple stepwise logistic regression model including different variables were conducted to evaluate the association between serum adipsin levels and the remission of NAFLD. <b><i>Results:</i></b> During a mean follow-up of 3.14 ± 0.36 years, 247 (27.20%) participants with NAFLD at baseline were in remission. At baseline, serum adipsin concentration was positively correlated with body mass index (<i>r</i>: 0.39, <i>p</i> &lt; 0.001), insulin (<i>r</i>: 0.31, <i>p</i> &lt; 0.001), and homeostasis model assessment of insulin resistance (<i>r</i>: 0.31, <i>p</i> &lt; 0.001) and was inversely associated with NAFLD remission with a fully adjusted odds ratio (OR) of 0.28 (0.16–0.48) (<i>p</i> trend &lt; 0.001). In a multiple stepwise logistic regression model, circulating adipsin independently predicted NAFLD remission (OR: 0.284, 95% confidence interval [CI]: 0.172–0.471, <i>p</i> for trend &lt;0.001). The area under the receiver operating characteristic curve was 0.751 (95% CI: 0.717–0.785) (<i>p</i> &lt; 0.001) for the prediction model of NAFLD remission. <b><i>Conclusions:</i></b> We provide evidence for an association between serum adipsin levels and the remission of NAFLD in a community-based prospective cohort study. Serum adipsin can be a potential biomarker for predicting NAFLD remission.
DOI: 10.6084/m9.figshare.17067773.v1
title: Supplementary Material for: Inverse Association of Serum Adipsin with the Remission of Nonalcoholic Fatty-Liver Disease: A 3-Year Community-Based Cohort Study

description: <b><i>Purposes:</i></b> Adipokine alterations contribute to the development and remission of nonalcoholic fatty-liver disease (NAFLD). Adipsin is one of the most abundant adipokines and is almost exclusively produced by adipocytes. However, data on adipsin in human NAFLD are limited and controversial. We performed this study to investigate the association between adipsin and the remission of NAFLD in middle-aged and elderly Chinese adults. <b><i>Methods:</i></b> Whether adipsin is associated with the remission of NAFLD in a 3-year community-based prospective cohort study was investigated. Baseline levels of adipsin were measured in serum samples collected from 908 NAFLD participants. NAFLD was diagnosed using abdominal ultrasonography. Logistic regression analysis and a multiple stepwise logistic regression model including different variables were conducted to evaluate the association between serum adipsin levels and the remission of NAFLD. <b><i>Results:</i></b> During a mean follow-up of 3.14 ± 0.36 years, 247 (27.20%) participants with NAFLD at baseline were in remission. At baseline, serum adipsin concentration was positively correlated with body mass index (<i>r</i>: 0.39, <i>p</i> &lt; 0.001), insulin (<i>r</i>: 0.31, <i>p</i> &lt; 0.001), and homeostasis model assessment of insulin resistance (<i>r</i>: 0.31, <i>p</i> &lt; 0.001) and was inversely associated with NAFLD remission with a fully adjusted odds ratio (OR) of 0.28 (0.16–0.48) (<i>p</i> trend &lt; 0.001). In a multiple stepwise logistic regression model, circulating adipsin independently predicted NAFLD remission (OR: 0.284, 95% confidence interval [CI]: 0.172–0.471, <i>p</i> for trend &lt;0.001). The area under the receiver operating characteristic curve was 0.751 (95% CI: 0.717–0.785) (<i>p</i> &lt; 0.001) for the prediction model of NAFLD remission. <b><i>Conclusions:</i></b> We provide evidence for an association between serum adipsin levels and the remission of NAFLD in a community-based prospective cohort study. Serum adipsin can be a potential biomarker for predicting NAFLD remission.
DOI: 10.6084/m9.figshare.14958117
title: Machine learning prediction of novel pectinolytic enzymes in Aspergillus niger through integrating heterogeneous (post-) genomics data

description: Supplementary material for 'Machine learning prediction of novel pectinolytic enzymes in Aspergillus niger through integrating heterogeneous (post-) genomics data' as published in <i>Microbial Genomics.</i><br>
DOI: 10.6084/m9.figshare.14958117.v1
title: Machine learning prediction of novel pectinolytic enzymes in Aspergillus niger through integrating heterogeneous (post-) genomics data

description: Supplementary material for 'Machine learning prediction of novel pectinolytic enzymes in Aspergillus niger through integrating heterogeneous (post-) genomics data' as published in <i>Microbial Genomics.</i><br>
DOI: 10.6084/m9.figshare.17067674
title: BTCH-GPP

description: An improved global gross primary production dataset covering 1980–2018
DOI: 10.6084/m9.figshare.17067674.v1
title: BTCH-GPP

description: An improved global gross primary production dataset covering 1980–2018
DOI: 10.6084/m9.figshare.17067713
title: Supplementary file Evaluation of Congo red dye decolorization.docx

description: Decolorization and degradation of textile dye by endophytic fungi stand to be profitable and viable alternative over conventional methods in respect to eco-friendliness, cost-effectiveness and non-hazardous in nature. One of the active fungal endophytes <i>Colletotrichum gloeosporioides</i> isolated from plant <i>Thevetia peruviana </i>(Pers.) K. Schum.<i> </i>was screened for laccase production and Congo red dye decolorization. Various physicochemical parameters like dye concentration, carbon sources, nitrogen sources, temperature and pH were optimized and maximum decolorization rate was achieved at 100 mg/l of dye concentration (82%), glucose (79%), yeast extract (80%), 30°C (80%), and 7 pH (78%). SEM image and fungal biomass changes represent that fungus actively participated in the dye decolorization and had less/or no effect on biomass. An impressive regenerative ability of <i>C. gloeosporioides</i> after dye decolorization indicated the tolerance against dye which is found to be more advantageous over previous reports of dye decolorization by endophytic fungi. UV-Vis spectra, TLC, FTIR and HPLC results confirmed the decolorization and degradation process due to absorption and biodegradation. Phytotoxicity assay depicted that degraded products are less toxic to <i>Phaseolus mungo</i> compared to Congo red. Overall findings showed that <i>C. gloeosporioides </i>had a good decolorization ability against Congo red and had well the potential for application in dye wastewater treatment.
DOI: 10.6084/m9.figshare.17067713.v1
title: Supplementary file Evaluation of Congo red dye decolorization.docx

description: Decolorization and degradation of textile dye by endophytic fungi stand to be profitable and viable alternative over conventional methods in respect to eco-friendliness, cost-effectiveness and non-hazardous in nature. One of the active fungal endophytes <i>Colletotrichum gloeosporioides</i> isolated from plant <i>Thevetia peruviana </i>(Pers.) K. Schum.<i> </i>was screened for laccase production and Congo red dye decolorization. Various physicochemical parameters like dye concentration, carbon sources, nitrogen sources, temperature and pH were optimized and maximum decolorization rate was achieved at 100 mg/l of dye concentration (82%), glucose (79%), yeast extract (80%), 30°C (80%), and 7 pH (78%). SEM image and fungal biomass changes represent that fungus actively participated in the dye decolorization and had less/or no effect on biomass. An impressive regenerative ability of <i>C. gloeosporioides</i> after dye decolorization indicated the tolerance against dye which is found to be more advantageous over previous reports of dye decolorization by endophytic fungi. UV-Vis spectra, TLC, FTIR and HPLC results confirmed the decolorization and degradation process due to absorption and biodegradation. Phytotoxicity assay depicted that degraded products are less toxic to <i>Phaseolus mungo</i> compared to Congo red. Overall findings showed that <i>C. gloeosporioides </i>had a good decolorization ability against Congo red and had well the potential for application in dye wastewater treatment.
DOI: 10.6084/m9.figshare.17067851
title: Supplementary Material for: Kawasaki Disease and Atopic Diseases: A Systematic Review and Meta-Analysis of Observational Studies

description: <b><i>Introduction:</i></b> The etiology of Kawasaki disease (KD), an inflammatory and cardiovascular disorder, remains largely unexplained after more than 50 years of intensive research. In recent years, the association between KD and atopic diseases had been explored by some observational studies. We systematically reviewed and summarized the literature on the relationship between KD and atopic diseases. <b><i>Methods:</i></b> MEDLINE and EMBASE were searched to identify observational studies on the association between KD and atopic diseases from inception to May 2021. Odds ratio (OR) was pooled using random-effects models. Heterogeneity was assessed using the <i>I</i><sup>2</sup> and Cochran Q statistics. Primary outcomes were to compare the prevalence of KD among individuals with atopic diseases to nonatopic disease controls and the prevalence of atopic diseases among individuals with KD to non-KD controls. <b><i>Results:</i></b> Thirteen studies, including 12,651 cases and 170,708 controls, were included in this meta-analysis. In cross-sectional studies, KD was associated with allergic rhinitis (<i>n</i> = 6; OR, 1.69; 95% CI, 1.52–1.87), asthma (<i>n</i> = 3; OR, 1.72; 95% CI, 1.38–2.14), allergic conjunctivitis (<i>n</i> = 2; OR, 1.95; 95% CI, 1.68–2.27), and atopic dermatitis (<i>n</i> = 3; OR, 1.35; 95% CI, 1.22–1.49). In case-control and cohort studies, KD was associated with allergic rhinitis (<i>n</i> = 3; OR, 1.35; 95% CI, 1.28–1.43), asthma (<i>n</i> = 8; OR, 1.40; 95% CI, 1.19–1.65), allergic conjunctivitis (<i>n</i> = 1; OR, 1.74; 95% CI, 1.45–2.09), and atopic dermatitis (<i>n</i> = 3; OR, 1.39; 95% CI, 1.26–1.53). <b><i>Conclusion:</i></b> KD diagnosed was associated with four common atopic diseases. Among the four allergic diseases, allergic conjunctivitis and asthma have the highest correlation with KD, which may provide a direction for exploring the etiology of KD.