cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.75030/1
title: Houde_heredity

description: Early life-history survival and fitness-related traits. Growing degree days information.
DOI: 10.5061/dryad.8635cs4h/1
title: SNP_Info_HoneyBeeSNPAssay.xlsx

description: The columns in the file "SNP_Info_HoneyBeeSNPAssay.xlsx" are as follows: -lsid:	local SNP ID referring to a file (amel_v3_asm_snps.dbsnps.gz) published by the Honey Bee Genome Project (http://www.hgsc.bcm.tmc.edu/project-species-i-Apis mellifera.hgsc?page Location=Apis mellifera), which is accessible via the URL: "http://www.hgsc.bcm.tmc.edu/ftp-archive/Amellifera/snp/"; -linkage group: Amel assembly version 3.0 linkage group 1~16; -Cooridnate: base position in linkage group containing polymorphism; -allele: polymorphism in format A/G, consensus base on left; -left flanking sequence: linkage group left flanking sequence (250 bases); -right flanking sequence: linkage group right flanking sequence (250 bases)
DOI: 10.5061/dryad.95qc4/1
title: Habitat-, body size-, and nuptial colour-based isolation in benthic and limnetic stickleback

description: Three .csv files with associated .txt readme files and an R script file for replication of statistical analyses. The .csv files contain data from (1) a test of nesting habitat preference in male benthic and limnetic threespine stickleback, (2) a test of mate choice by female benthic and limnetic stickleback based on male nest habitat, and (3) mate choice trials between benthics and limnetics measuring the effects of size difference and male nuptial colour on hybridization rate.
DOI: 10.5061/dryad.bp23483h/1
title: wolf RData

description: Readme file explains the structure of the RData workspace file
DOI: 10.5061/dryad.bp23483h/2
title: simulate and perturb

description: R code to run simulations
DOI: 10.5061/dryad.bs737/1
title: BinaryAFLPdata

description: 0/1 AFLP matrix for 10 individuals of 24 Swiss locations of Chorthippus albomarginatus, scored using RAWGENO default settings
DOI: 10.5061/dryad.c6n53/1
title: Breitkopf_et_al_2013_JEB_Ophrys_sphegodes_AFLP

description: AFLP binary data matrix for 95 individuals from seven populations of Ophrys sphegodes and O. exaltata. Loci in lines, individuals in columns. Identifiers: OSARG: O. sphegodes ssp. argentaria (Tuscany); OSCLA: O. sphegodes ssp. classica (Tuscany); OETUS: O. exaltata (Tuscany); OSGAR: O. sphegodes (Apulia); OEGAR: O. exaltata (Apulia); OSCUM: O. sphegodes (Campania); OECUM: O. exaltata (Campania);
DOI: 10.5061/dryad.d6620/1
title: Raeymaekers et al-MolEcol-2014 Eda

description: See first sheet
DOI: 10.5061/dryad.f710n/1
title: Common Garden field experiment 2010
DOI: 10.5061/dryad.h6t17/1
title: Genital binary data of xystodesmid millipedes

description: The data were collected based on observations of specimens.
DOI: 10.5061/dryad.h6t17/2
title: Continuous data of body and genitalia of xystodesmid millipedes

description: The data were collected based on measurements of specimens.
DOI: 10.5061/dryad.hn104/1
title: Catalase

description: DNA sequences from Callyspongia vaginalis for the Catalase gene (partial coding sequence)
DOI: 10.5061/dryad.hn104/2
title: Cathespsin

description: DNA sequences from Callyspongia vaginalis for the Cathepsin gene (partial coding sequence)
DOI: 10.5061/dryad.hn104/3
title: Cirhin

description: DNA sequences from Callyspongia vaginalis for the Cirhin gene (partial coding sequence)
DOI: 10.5061/dryad.j272c/5
title: Taylor&Hoffman5a-Distance-MODELS-untrans
DOI: 10.5061/dryad.j272c/6
title: Taylor&Hoffman5b-Distance-MODELS-trans
DOI: 10.5061/dryad.j272c/7
title: Taylor&Hoffman5c-FIG-4A-DATA
DOI: 10.5061/dryad.j272c/8
title: Taylor&Hoffman5d-FIG-4B-DATA
DOI: 10.5061/dryad.j272c/9
title: Taylor&Hoffman1-Genotypes-Original_Genepop-ALL_LOCI
DOI: 10.5061/dryad.jh667/1
title: Transcript focus group discussion (step 1) part 1

description: Word transcript of qualitative focus group discussions with German office-based physicians part 1 (n=5)
DOI: 10.5061/dryad.jh667/2
title: Transcript focus group discussion (step 1) part 2

description: Word transcript of qualitative focus group discussions with German office-based physicians part 2 (n=4)
DOI: 10.5061/dryad.jh667/3
title: Transcript focus group discussion (step 1) part 3

description: Word transcript of qualitative focus group discussions with German office-based physicians part 3 (n=4)
DOI: 10.5061/dryad.k6s7h/4
title: Data from Experiment 2
DOI: 10.5061/dryad.k6s7h/5
title: Shell thickness of experimental eggs
DOI: 10.5061/dryad.k94p3/1
title: KaryotypeCounts

description: Field data. Number of Anopheles funestus collected in populations of Cameroon, by the type of arrangement in3Ra. Columns are: The name of the village, Longitude and Latitude (in WGS84 UTM  Zone 33 North), the distance in km from the start of the transect, the counts of Standard homozygotes (SS), Heterozygotes (SI), and Inverted Homozygotes (II), and the total of individuals collected
DOI: 10.5061/dryad.k94p3/2
title: Source Code
DOI: 10.5061/dryad.kj4n8/1
title: Apostichopus_SNP
DOI: 10.5061/dryad.kj4n8/2
title: Apostichopus_SSR
DOI: 10.5061/dryad.kj4n8/3
title: Apostichopus-Unigenes
DOI: 10.5061/dryad.pm885/1
title: Individual data

description: Raw data used in analyses: individual capture histories, biometry and contamination levels of glaucous gulls on Bjørnøya
DOI: 10.5061/dryad.pm885/2
title: Population viability analyses

description: Methods, data and results of population viability analysis of glaucous gulls on Bjørnøya
DOI: 10.5061/dryad.pt384/2
title: genotypes

description: Microsatellite genotypes
DOI: 10.5061/dryad.rd465/1
title: Mapping data: two point linkage estimates and standard errors.

description: Composite two point linkage estimates and standard errors for each linkage group in the Culex pipiens genetic map.
DOI: 10.5061/dryad.rp3pc/1
title: Fitness data at the family and individual level. Genotypic data for each family.
DOI: 10.5061/dryad.sv33f/38
title: simpson_diversity_L3

description: Class level Simpson's diversity calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/39
title: simpson_diversity_L4

description: Order level Simpson's diversity calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/40
title: simpson_diversity_L5

description: Family level Simpson's diversity calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/41
title: simpson_diversity_L6

description: Genus level Simpson's diversity calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/42
title: simpson_diversity_L7

description: OTU level Simpson's diversity calculated for 100 rarefaction plots (there are 6 tables for 6 taxonomic levels, species through phylum. L7=species, L2=phylum)
DOI: 10.5061/dryad.sv33f/43
title: READ ME

description: file explaining sample ID codes, and contents of each data and code file uploaded to Dryad
DOI: 10.5061/dryad.t2k1b/1
title: AFLPdata and GenBank accession numbers

description: This Excel file provides AFLP genotype data and genbank accession numbers from individuals of a Alpine endemic jumping bristletail. The file shows individual numbers, the corresponding mtDNA haplotypes , and the AFLP genotypes (72 loci). Fragment analysis was done on an ABI 3130 sequencer (Applied Biosystems, USA), data were analysed with Peakscanner v1.0, and the binary matrix was created with tinyFLP.
DOI: 10.5061/dryad.t2k1b/2
title: mtDNA Alignment

description: This sequence file provides the final 840 bp Alignment of 144 individuals from three populations. Sequences were edited manually and aligned by Clustal W.
DOI: 10.5061/dryad.36ng4/1
title: Tabla 2006 Behav Ecol
DOI: 10.5061/dryad.48f62/1
title: cichlidCONCAT

description: Aligned DNA sequences from 10 nuclear genes for 158 percomorph species
DOI: 10.5061/dryad.48f62/2
title: cichlidRAxML

description: Tree file resulting from RAxML analysis of the 10 nuclear gene dataset.
DOI: 10.5061/dryad.48f62/3
title: cichlidRLC_LGNa

description: xml file used in relaxed molecular clock analyses in BEAST.
DOI: 10.5061/dryad.48f62/4
title: cichlidRLC_SUM

description: Time calibrated phylogenetic tree summarized from the posterior set of trees resulting from the BEAST analyses.
DOI: 10.5061/dryad.48f62/5
title: R_scripts_data

description: Zipped folder containing analytical scripts and data for estimating the age of cichlid fishes using paleontological data.
DOI: 10.5061/dryad.66mc094q/12
title: BEST input file HKY model
DOI: 10.5061/dryad.66mc094q/13
title: BEST input file GTR model
DOI: 10.5061/dryad.6d2ps7s7/1
title: Francis_etal_2012ProcB_pollination_data
DOI: 10.5061/dryad.6d2ps7s7/2
title: Francis_etal_2012ProcB_SeedRemoval_data
DOI: 10.5061/dryad.6d2ps7s7/3
title: Francis_etal_2012ProcB_Seedling_data
DOI: 10.5061/dryad.6jk30/1
title: Survival_genetic
DOI: 10.5061/dryad.6jk30/2
title: Survival_social
DOI: 10.5061/dryad.6jk30/3
title: LRS_genetic
DOI: 10.5061/dryad.6jk30/4
title: LRS_social
DOI: 10.5061/dryad.812t1/1
title: Raw data, processing code, processed data and analysis code + repeatability files
DOI: 10.5061/dryad.9hh83/1
title: Transgenerational experiment - germination and growth data
DOI: 10.5061/dryad.bg006/1
title: Wielstra_Triturus_taxonomy_Online_appendix1
DOI: 10.5061/dryad.bg006/2
title: Wielstra_Triturus_taxonomy_Online_appendix2

description: Online Appendix 2 – Number of rib-bearing vertebrae (NRBV) for newts from Vrtovać, Serbia.
DOI: 10.5061/dryad.bg006/3
title: Wielstra_Triturus_taxonomy_Online_appendix3

description: Online Appendix 3 – Genome size data from Litvinchuk et al. (1999) for individual newts.
DOI: 10.5061/dryad.bg006/4
title: Wielstra_Triturus_taxonomy_Online_appendix4

description: Online Appendix 4 – Allozyme data from Litvinchuk et al. (1999) for individual newts and the BAPS group they were assigned to.
DOI: 10.5061/dryad.bg006/5
title: Wielstra_Triturus_taxonomy_Online_appendix5

description: Online Appendix 5 – Pictures of the ventral side of the holotype and paratypes of Triturus ivanbureschi sp. nov.
DOI: 10.5061/dryad.bg006/6
title: Wielstra_Triturus_taxonomy_Online_appendix6

description: Online Appendix 6 – X-ray photographs of the holotype and paratypes of Triturus ivanbureschi sp. nov.
DOI: 10.5061/dryad.f710n/2
title: Common Garden field experiment 2011
DOI: 10.5061/dryad.f710n/3
title: Pollinator Observation summary
DOI: 10.5061/dryad.f710n/4
title: Pollinator Constancy
DOI: 10.5061/dryad.h5t68/1
title: Agave deserti transcriptome profiling (RPKM values)

description: A table of the normalized RPKM values for Agave deserti transcripts in various tissues.
DOI: 10.5061/dryad.h5t68/2
title: Sequences of Agave deserti commensal organisms and contaminants

description: FASTA file of assembled contigs that DO NOT appear to be Agave deserti sequences. Possible sources are commensal microbes, lab contaminants, and mis-assemblies.
DOI: 10.5061/dryad.h5t68/3
title: Pfam and InterPro annotations of Agave deserti proteins

description: Pfam and InterPro annotations of Agave deserti proteins.
DOI: 10.5061/dryad.h5t68/4
title: Sequences of Agave deserti proteins

description: FASTA file of Agave deserti proteins
DOI: 10.5061/dryad.h5t68/5
title: Sequences of Agave deserti transcript contigs

description: FASTA of Agave deserti transcript contigs.
DOI: 10.5061/dryad.hn104/10
title: Simualted Data for ILS Null Fast Rate

description: This file contains the simulated data used to create the null distributions for the test of incomplete lineage sorting in Callyspongia vaginalis based on the fast substitution rate
DOI: 10.5061/dryad.hn104/11
title: Simualted Data for ILS Null Slow Rate

description: This file contains the simulated data used to create the null distributions for the test of incomplete lineage sorting in Callyspongia vaginalis based on the slow substitution rate
DOI: 10.5061/dryad.hn104/12
title: Simulated Data For SumStat Test

description: This file contains the data simulated to test the performance of different summary statistics to detect incomplete lineage sorting. The name of each file indicates the age of the population divergence under which the data were simulated.
DOI: 10.5061/dryad.hn104/4
title: Elongation_factor1a

description: DNA sequences from Callyspongia vaginalis for the Elongation factor 1 alpha gene (partial coding sequence)
DOI: 10.5061/dryad.hn104/5
title: Filamin

description: DNA sequences from Callyspongia vaginalis for the Filamin gene (partial coding sequence)
DOI: 10.5061/dryad.hn104/6
title: Macrophage_expressed_protein

description: DNA sequences from Callyspongia vaginalis for the Macrophage expressed protein gene (partial coding sequence)
DOI: 10.5061/dryad.hn104/7
title: R script Summary Statistics

description: This R script was used to calculates the summary statistics theta, nucleotide diversity, and PhiST for simulated and empirical data
DOI: 10.5061/dryad.hn104/8
title: Script_to_split_infiles

description: This python script was used to split one file with 1000 simulated datasets into 1000 files with one dataset each. This script was used after simulating data in ms and seqgen and before summary statistics were calculated using the R script.
DOI: 10.5061/dryad.hn104/9
title: Scripts_null_distributions

description: This file contains the ms and seqgen commands used to simulate the data used to create the null distributions in the hypothesis testing for incomplete lineage sorting in Callyspongia vaginalis
DOI: 10.5061/dryad.jh667/4
title: Transcript focus group discussion (step 1) part 4

description: Word transcript of qualitative focus group discussions with German office-based physicians (part 4) n=5
DOI: 10.5061/dryad.jh667/5
title: Fachinfo on-line survey data part 1

description: Top-line general information on time and duration on-line survey
DOI: 10.5061/dryad.jh667/6
title: Fachinfo online survey charts and responses to questions

description: Excel file with individual responses to the questions in the on-line survey and summary data and charts of the validated data sets. Questions have been detailed in Appendix III to the publication. Code book is included in file.
DOI: 10.5061/dryad.mg76th0n/1
title: Alignment files

description: This .rar file contains all the alignments used to create Table 1, including 51 alignments in total. The files are organized in sub-folders firstly by taxonomic group: sub-order Charadrii, suborder Scolopaci, or shorebirds (which includes Charadrii, Scolopaci and Lari). Within taxonomic group files are organized by locus: Mt exon, RAG1 exon, beta-fib intron 7, and beta-fib intron 7 gap data. Note that the first three are sequence alignments but the last is a coding of the gaps in beta-fib intron 7. Within each of these folders are alignments for each of the methods: clustal, mafft, muscle, sate and t-coffee.
DOI: 10.5061/dryad.mg76th0n/2
title: Supplementary data

description: Includes extra details on the datasets used and supplementary figure 1
DOI: 10.5061/dryad.p7c8s/1
title: raw data Wallinger et al MER-12-0242

description: Molecular detection rates of different Agriotes larvae feeding on different plant species - feeding experiments with fresh plants and decaying tissue
DOI: 10.5061/dryad.pk93r/1
title: Marsilea comb Aug2011

description: Nexus file of DNA sequence data
DOI: 10.5061/dryad.q56p6r1b/1
title: Data
DOI: 10.5061/dryad.r6c36/1
title: assortative flocking

description: These are the data that were analyzed in this manuscript. They were collected using playbacks to free-flying (responding) crossbills in the field. The columns from left to right are: the identity (call type) of the crossbills flying over or responding call type; the identity of the calls (call type) on the playback tape to which the free-flying call types were responding; the mean probability that the free-flying crossbills landed in response to the playbacks; the difference in bill depth between the call types (free-flying and playback); the call similarity of the two groups of crossbills; whether the responding and playback crossbills were the same call type (homotypic) or not (heterotypic); whether the free-flying call types were familiar with the playback call type; and whether the comparison involved call type 4.
DOI: 10.5061/dryad.s672t4gh/2
title: Ugelvig&al_GeographicDistanceMatrix

description: The file contains pairwise geographic distances between individual samples, based on unique coordinates generated in the clustering program TESS.
DOI: 10.5061/dryad.tf5f3/1
title: Supplementary Table S1

description: Uniola paniculata populations, their geographical locations, haplotype group and the restoration status of the site.
DOI: 10.5061/dryad.2t8r1/1
title: Individual data

description: For each sampled Dolichovespula saxonica indvidual (queens and workers), its colony affiliation, level of ovary development, classification of reproductive caste, and CHC raw peak areas.
DOI: 10.5061/dryad.2t8r1/2
title: Data for linear regression models

description: For each reproductive individual (queens and workers), its colony affiliation (Colony), its repoductive caste (Caste), its score on the first principal component of CHC data (PC1), the percentage of worker-produced males in its colony (WPM), the percentage of reproductive workers in its colony (RW), its ovary development (OvaryScore), and the level of development of its colony (ColonyStage).
DOI: 10.5061/dryad.3gq01/1
title: Conservation Genetics of Taxus contorta_Pakistan
DOI: 10.5061/dryad.4n9b4/1
title: 2789_alignments.tar

description: 2789 multiple sequence alignment of protein-coding genes from 7 Neurospora species
DOI: 10.5061/dryad.7c730/1
title: FullDataset

description: This file is a tab-delimited text file of genotype information formatted in the CONVERT file format (1). The marker ATP1 is not diploid, but rather is formatted in a manner that allows for direct import, along with the actually diploid microsatellites, into a number of population genetics softwares, including the utilized GenoDive (2). FullDataset.txt contains genotype information deriving from 14 microsatellites and one mtDNA SNP, deriving from 135 and 170 individuals deriving from a metapopulation of the flowering plant, Silene latifolia, located in Giles County, VA, USA, in 1993 and 2008, respectively. References: 1). Glaubitz JC (2004). convert: A user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Mol Ecol Notes 4(2): 309-310. 2). Meirmans PG, Van Tienderen PH (2004). GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms. Mol Ecol Notes 4(4): 792-794.
DOI: 10.5061/dryad.93pj0/2
title: file 1

description: .fas file of assembled isotigs. Isotig number correspond to isotig numbers in Table 1
DOI: 10.5061/dryad.93pj0/4
title: Table 1
DOI: 10.5061/dryad.93pj0/5
title: Table 2
DOI: 10.5061/dryad.951j9/1
title: metabolism

description: These measurements were taken at Lough Hyne, Co. Cork, Ireland during August 2009.  Column headings are explained in the attached Excel file
DOI: 10.5061/dryad.951j9/2
title: consumption

description: All consumption measurements were taken at Lough Hyne, Co. Cork, Ireland during August 2009.  Column headings are explained in the attached Excel file.
DOI: 10.5061/dryad.951j9/3
title: consumption efficiency

description: All measurements from which the consumption efficiency values were calculated were taken at Lough Hyne, Co. Cork, Ireland during August 2009.  Column headings are explained in the attached Excel file.
DOI: 10.5061/dryad.9hh83/2
title: Transgenerational experiment - % Rhynchosporium infection
DOI: 10.5061/dryad.bj17r/1
title: Morphological and isotope data of the vinous-throated parrotbills in Taiwan

description: This file contains data on 170 individual adult Paradoxornis webbianus captured between 2009 and 2012 from eight sites in Taiwan. The columns include, from left to right: sampling data (short date format: yyyy/mm/dd), species scientific name, latitude of the site, longitude of the site, site full name in English, site short name used in the associated manuscript, tag showing the band number of the bird (a number without a beginning letter "K" indicates the bird died during handling), sex of the bird, stable carbon isotope values of the bird's feather tissue, stable nitrogen isotope values of the bird's feather tissue, altitude of the site, the bird's bill length in mm, the bird's bill width in mm, the bird's bill depth in mm, the bird's wing length in mm, and the name of the technician who performed the morphological measurements. Sex of the bird was determined by molecular sexing. Stable carbon and nitrogen isotope values were meausured on a ThermoFinnigan Delta Plus Advantage Isotope Ratio Mass Spectrometer (Bremen, Germany).
DOI: 10.5061/dryad.bj17r/2
title: Isotope data of plant foliar samples in Taiwan

description: This file contains stable carbon and nitrogen isotope data of foliar samples from 69 plants (50 unique taxa at species or genus level) collected at six sites in Taiwan. These are used to calculate baseline isotope values for the consumer species, Paradoxornis webbianus, in the associated publication. The columns are: plant species scientific name, stable carbon isotope value of the foliar tissue, stable nitrogen isotope value of the foliar tissue, elevation, latitude and longitude of the site, full name of the site and short name of the site.
DOI: 10.5061/dryad.cd65p/1
title: Hatchling morphology and performance

description: These data are the direct morphological measures and locomotor performance (sprinting and climbing) of hatchling Carlia longipes from two egg clutches randomly allocated to either the forest-high or rocky outcrop-low temperature incubation treatment.
DOI: 10.5061/dryad.cd65p/2
title: Nest Temperature Logger Data

description: These are the nest temperatures of eleven nest of Carlia longipes from a site near Cooktown, QLD, Australia. The nests were located in rock outcrop (n = 5) and forest habitat (n = 6) sites.
DOI: 10.5061/dryad.cd65p/3
title: Microhabitat enclosure trials-Hatchling Carlia longipes

description: These data are based on video footage of the duration that hatchling Carlia longipes lizards used various microhabitat types available within an enclosure. The hatchlings where from the two nest temperature environments.
DOI: 10.5061/dryad.fv21r/1
title: Pryke et al. FE-2013-00301

description: Following concerns raised by the authors of the above article, a review carried out by Macquarie University revealed that there were inconsistencies between the available dataset and the results reported in the article. The dataset archived with Dryad is incomplete, and it has not been possible to review original data files. Hence, the validity of the results could not be verified, and the article has been retracted.
DOI: 10.5061/dryad.h5t68/10
title: Sequences of Agave tequilana transcript contigs

description: FASTA file of Agave tequilana assembled transcript contigs.
DOI: 10.5061/dryad.h5t68/11
title: Pacific Biosciences long-read sequences, unaltered

description: Pacific Biosciences sequencing of Agave tequilana transcriptome. These are unassembled subreads directly output from a Pacific Biosciences RS.
DOI: 10.5061/dryad.h5t68/12
title: Illumina-corrected Pacific Biosciences long-read data

description: FASTA of Pacific Biosciences subreads of file 17618_filtered_subreads.fasta.gz after correction by Agave tequilana Illumina data. Only subreads passing filtering metrics are reported.
DOI: 10.5061/dryad.h5t68/13
title: OrthoMCL clustering

description: OrthoMCL grouping of proteins within the Phytozome Tester Set. #OrthoMCL clusters with Agave high confidence proteins and the Phytozome Tester Set. Abbreviations are as follows:ateq - A. tequilana, ades - A. deserti, atha - A. thaliana, bdis - B. distachyon, crei - C. reinhardtii, gmax - G. max, mtru - M. truncatula, osat - O. sativa, ptri - P. trichocarpa, rcom - R. communis, sbic - S. bicolor, sita - S. italica, zmay - Z. mays