cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24241570.v1
title: Supplementary Material for: Proteomics to metabolomics: A new insight into the pathogenesis of hypertensive nephropathy

description: Abstract Background: Hypertensive nephropathy (HN) is a high burden disorder and a leading cause of end-stage renal disorder. In spite of huge investigations, the underlying mechanisms are yet largely unknown. Systems biology is a promising approach to provide a comprehensive insight towards this complex disorder. Methods: Protein expression profiles of kidney tubule and cortex sub-compartments were retrieved from the PRIDE database and the quality of the datasets were assessed using principal component analysis (PCA) and hierarchical clustering. Differentially expressed proteins (DEPs) were detected and their attributed metabolites were enriched and their interactions were assessed in multi-layer networks. Moreover, considering the DEPs and the predicted metabolites, key biomedical phenomena with a leading role in HN pathogenesis were proposed. Results: Amino acid and purine metabolisms are the most prominent alteration in kidney cortex whereas dysregulation of energy hemostasis is a key pathogenic mechanism in tubule. Besides, actin cytoskeleton disorganization is an enriched pathway in both anatomical areas. Conclusion: The proteomics profiles of kidney sub-compartments were analyzed using a top-down approach to infer the main pathogenic processes. The constructed holistic map of HN can be exploited to propose novel therapeutic strategies. Keywords: Hypertensive nephropathy, Proteomics, Metabolomics, Systems biology
DOI: 10.34740/kaggle/dsv/6607849
title: Egypt Gold Prices | Daily Updated
DOI: 10.57780/esa-1eqk63p
title: Gaia Focused Product Release: Extended radial velocity epoch data for Long Period Variables

description: Radial velocity time series for a list of 9,614 long-period variables. The publication mainly consists of: A table with the epoch radial velocity data points for this sub-set of variable stars. Statistical parameters of the radial velocity time series for these long-period variables.
DOI: 10.57780/esa-q21kq5m
title: Gaia Focused Product Release: Astrometry and photometry from engineering images taken in the Omega Centauri region

description: A list of new sources based on Service Interface Function (SIF) engineering images of very dense regions in the sky (in this case the Omega Centauri globular cluster), building an add-on catalogue to the nominal Gaia catalogue. Nominal and SIF detections were not mixed to create these sources. The new sources are thus obtained from SIF image detections only. Sources already present in the nominal catalogue were removed from the SIF add-on catalogue.
DOI: 10.57780/esa-sfvnhs3
title: Gaia Focused Product Release: The first results of quasars' environment analysis for gravitational lenses search

description: A list of sources around quasar candidates with minimum angular separation of 0.3 arcseconds to be used for gravitational lenses search. The publication mainly consists a table of 4.8 million sources (named components), based on an analysis of the observations in the neighbourhood of a list of 3.8 million quasar candidates. This table provides the mean astrometry and mean onboard photometry of the sources. The analysis of this table by several artificial intelligence algorithms which led to the selection of a list of 381 gravitational lens candidates that are presented in the associated Gaia Collaboration paper. The 4.8 million sources with their scores to be a lens are available at CDS. A table of individual epoch observations linked to their corresponding source (component), with their celestial coordinates and onboard magnitudes. A table of individual epoch observations classified as outliers and rejected by our clustering analysis, with their celestial coordinates and onboard magnitudes.
DOI: 10.57780/esa-t7sftbt
title: Gaia Focused Product Release: Diffuse Interstellar Bands from aggregated RVS spectra

description: Gaia is a European space mission providing astrometry, photometry, and spectroscopy of more than 1000 million stars in the Milky Way. Also data for significant samples of extragalactic and Solar system objects is made available. The Gaia Archive contains deduced positions, parallaxes, proper motions, radial velocities, and brightnesses. Complementary information on multiplicity.
DOI: 10.57780/esa-v4x7xfa
title: Gaia Focused Product Release: Updated astrometry for Solar System Objects

description: The publication concerns epoch astrometry of asteroids and natural satellites of the planets, collected by Gaia over 66 months. All objects in this dataset (156,823, mostly asteroids plus 31 planetary satellites) were already present in Gaia's Data Release 3. In addition, asteroid orbits (156,762) derived from Gaia data are provided. No additional photometric or spectroscopic data are published.
DOI: 10.17632/v7jysndj3m.1
title: A GAPDH serotonylation system couples CD8+ T-cell glycolytic metabolism to antitumor immunity

description: The neuroimmune signaling axis involving serotonin (5-hydroxytryptamine, 5-HT) has been well acknowledged. Apart from the canonical 5-HT-receptor signaling transduction pattern, 5-HT-involved post-translational serotonylation has recently been noted. However, whether and how serotonylation affects immune cell function remains poorly understood. Using copper click chemistry and an unbiased proteomic approach, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was identified as the substrate for serotonylation in activated CD8+ T cells. Tissue transglutaminase 2 (TGM2) catalyzed the serotonylation reaction of GAPDH by covalently incorporating intracellular 5-HT into GAPDH Gln262 (Q262ser), resulting in enhanced cytoplasmic translocation and glycolytic activity. Glycolytic metabolism induced by GAPDH serotonylation supports the expression of the cytokine interferon γ (IFN-γ) and contributes to the antitumor ability of CD8+ T cells. Activated CD8+ T cells accumulate intracellular 5-HT for serotonylation through both cell-autonomous synthesis by tryptophan hydroxylase 1 (TPH1) and uptake from the extracellular compartment via serotonin transporter (SERT). Genetic ablation of TPH1 or SERT inhibits proliferation and IFN-γ production in CD8+ T cells, which subsequently impairs their antitumor immune activity. Monoamine oxidase A (MAOA) degrades intracellular 5-HT and acts as an intrinsic negative regulator of CD8+ T cells. Adoptive transfer of 5-HT-producing TPH1-overexpressing chimeric antigen receptor T (CAR-T) cells induced a robust antitumor response in mice. These findings reveal a GAPDH serotonylation system that promotes glycolytic metabolism and antitumor immune activity of CD8+ T cells.
DOI: 10.17632/br8gsspwj9.1
title: The nutritional and economic potential of tofu dreg (okara) and its utilization for food products in Indonesia

description: The data set for manuscript entitled "The nutritional and economic potential of tofu dreg (okara) and its utilization for food products in Indonesia" which is submitted to Food Reviews International Journal with Submission ID 236715925
DOI: 10.17632/ns3b3cd8jv.1
title: Endothelial barrier dysfunction in systemic inflammation is mediated by soluble VE-cadherin interfering VE-PTP signalling

description: Original Western Blots for the manuscript
DOI: 10.18119/n96g6r
title: HCT overlap: MERS-CoV vs pathway node (ChIP-Seq) - full
DOI: 10.18119/n9pg63
title: HCT overlap: MERS-CoV vs pathway node family (transcriptomic) – all families
DOI: 10.18119/n9qg7s
title: MERS-CoV transcriptomic consensome - full
DOI: 10.5281/zenodo.7417572
title: Kirchhoff pre-stack depth migration images of the multi-channel seismic data, SO190, RV. SONNE

description: The dataset consists of four newly processed 2-D pre-stack depth migrated multi-channel seismic lines (BGR06_303, BGR06_305, BGR06_311 and BGR06_313) collected by GEOMAR and BGR in 2006. The dataset reveals the subducted oceanic reliefs and detailed accretionary wedge structure offshore eastern Java, Bali, Lombok, and Sumbawa islands, along the Sunda arc. The dataset is saved in standard SEGY format and could be loaded in open-source or commercial software.
DOI: 10.5281/zenodo.7417701
title: Multi-beam bathymetry data offshore eastern Java margin

description: The dataset contains the multi-beam bathymetry map, merged with GEBCO global grid, offshore the eastern Java margin, Sunda arc. The multi-beam data was collected by GEOMAR and BGR in 2006 during Sonne cruise SO190. The merging of the grid file is done by using QGIS 3.16 and saved in NetCDF format.
DOI: 10.17632/4ynxfp3w53.1
title: Open access dataset for machine-generated text detection in Russian

description: Open access dataset for machine-generated text detection in Russian. The dataset consists of a zip-archive with 450k documents from Russian Wikipedia corpus as a real part for detection task and 450k machine-generated documents. Generated documents contains 150k samples for each language model (SberAI-small, SberAI-large, Facebook-XGLM) with 3 sampling methods (top-k, top-p, pure) and 2 priming sequence strategy (word, sentence). We provide you with access both to the data with the combined generated samples and to the individual parts of the documents generated by the different language models.
DOI: 10.17632/4ynxfp3w53.2
title: Open access dataset for machine-generated text detection in Russian

description: Open access dataset for machine-generated text detection in Russian. The dataset consists of a zip-archive with 450k documents from Russian Wikipedia corpus as a real part for detection task and 450k machine-generated documents. Generated documents contains 150k samples for each language model (SberAI-small, SberAI-large, Facebook-XGLM) with 3 sampling methods (top-k, top-p, pure) and 2 priming sequence strategy (word, sentence). We provide you with access both to the data with the combined generated samples and to the individual parts of the documents generated by the different language models.
DOI: 10.5281/zenodo.8398538
title: MediaFutures Open Calls Data-Set

description: The Data-Set includes the data collected through the cascade funding open calls carried out during the H2020 MediaFutures project with the title “MediaFutures, Data-driven innovation hub for the media value chain”. The responsible and innovative use of data is instrumental in today's digitalised media industry. The EU-funded MediaFutures project has addressed this challenge by reshaping the media value chain. It has set up a virtual European data innovation hub to support entrepreneurial and innovative projects. It has also established a participatory inclusive innovation program encouraging synergies between businesses and creators and organised a competition to identify innovative digital entrepreneurs, creatives and data-empowered solutions. By delivering data and experimentation facilities to the winners, the project has showcased and improved their ideas. It has also facilitated the technical, legal, business and sustainability mentoring of businesses and artists and helped them achieve further access to funding. The virtual European data innovation hub has been supported by an international network of European organisations. The project has received funding from the European Union’s Horizon2020 research and innovation programme under grant agreement 951962. The file contains data from the open calls, webinars, matchmaking events and help-desk activities carried out during the MediaFutures project. It includes data such as the number of applications received, data regarding eligibility and in-eligibility of applications, from which country the applications came, how many projects were evaluated and funded, data on the gender and ethnicity of applicants, etc. For more information and context related to the data, see also the following deliverables published on the MediaFutures website (https://mediafutures.eu/resources/): D1.4: Summary of Calls v1, D1.5: Summary of Open Calls v2, D1.6: Summary of Calls v3.
description: Document related to the MediaFutures project: https://doi.org/10.5281/zenodo.6491214
DOI: 10.5281/zenodo.8398537
title: MediaFutures Open Calls Data-Set

description: The Data-Set includes the data collected through the cascade funding open calls carried out during the H2020 MediaFutures project with the title “MediaFutures, Data-driven innovation hub for the media value chain”. The responsible and innovative use of data is instrumental in today's digitalised media industry. The EU-funded MediaFutures project has addressed this challenge by reshaping the media value chain. It has set up a virtual European data innovation hub to support entrepreneurial and innovative projects. It has also established a participatory inclusive innovation program encouraging synergies between businesses and creators and organised a competition to identify innovative digital entrepreneurs, creatives and data-empowered solutions. By delivering data and experimentation facilities to the winners, the project has showcased and improved their ideas. It has also facilitated the technical, legal, business and sustainability mentoring of businesses and artists and helped them achieve further access to funding. The virtual European data innovation hub has been supported by an international network of European organisations. The project has received funding from the European Union’s Horizon2020 research and innovation programme under grant agreement 951962. The file contains data from the open calls, webinars, matchmaking events and help-desk activities carried out during the MediaFutures project. It includes data such as the number of applications received, data regarding eligibility and in-eligibility of applications, from which country the applications came, how many projects were evaluated and funded, data on the gender and ethnicity of applicants, etc. For more information and context related to the data, see also the following deliverables published on the MediaFutures website (https://mediafutures.eu/resources/): D1.4: Summary of Calls v1, D1.5: Summary of Open Calls v2, D1.6: Summary of Calls v3.
description: Document related to the MediaFutures project: https://doi.org/10.5281/zenodo.6491214
DOI: 10.17632/bzr2rxttvz.1
title: Credit scoring with class imbalance data: An out-of-sample and out-of-time perspective.

description: Data for predicting default risk in the next 12, 36, and 60 months. A training sample is provided for each outcome window, as well as out-of-sample (OOS) and out-of-time (OOT) testing samples. OOS is generated using the same timeline as the training sample, whereas OOT is created from a future timeline. The samples are all generated using the same characteristics/features.
DOI: 10.25345/c58k7569m
title: MassIVE MSV000093024 - GNPS - Nocardia mangyaensis NH1
title: A combination of iron scavenging metabolites produced by N. mangyaensis NH1 showed antifungal activity against several plant pathogenic fungi.
DOI: 10.17632/2dwrjkyc2w.1
title: obese-high frequency audiometry

description: 125 Hz-16kHz audiometric findings of obese(bmı&gt;30) and non obese participants.
DOI: 10.5281/zenodo.8060227
title: DiscFine_Subvolumes_Porous_Fatigue_Viet_Tomo

description: Contains, for 45 subvolumes (camemberts with defects), nominal stress ranging from 40 to 80 MPa: a) Neuber-corrected stresses, b) volumes c) cumulated plasticity in the 20th cycle (stabilized) <strong>Mesh type:</strong> Fine mesh
DOI: 10.5281/zenodo.8060228
title: DiscFine_Subvolumes_Porous_Fatigue_Viet_Tomo

description: Contains, for 45 subvolumes (camemberts with defects), nominal stress ranging from 40 to 80 MPa: a) stresses, b) volumes c) cumulated plasticity in the second cycle <strong>Mesh type:</strong> Fine mesh
DOI: 10.5281/zenodo.8405603
title: DiscFine_Subvolumes_Porous_Fatigue_Viet_Tomo

description: Contains, for 45 subvolumes (camemberts with defects), nominal stress ranging from 40 to 80 MPa: a) Neuber-corrected stresses, b) volumes c) cumulated plasticity in the 20th cycle (stabilized) <strong>Mesh type:</strong> Fine mesh
DOI: 10.17632/smhjcchk78.1
title: Dataset Plataforma Ludominga

description: Base de datos de la accesibilidad en la plataforma Ludominga
DOI: 10.17632/kk7c4f6473.1
title: Concentrations of anthropogenic carbon dioxide in the Prydz Bay in 2015

description: This is a dataset of concentrations of anthropogenic CO2 and associated parameters in the Prydz Bay, Antarctic in 2015.
DOI: 10.17632/gwk54j8b92.1
title: Overtrading of widespread generalist amphibians is a global biodiversity time-bomb

description: The datasets used to construct Figure 1 in the manuscript "Overtrading of widespread generalist amphibians is a global biodiversity time-bomb" written by Amael Borzee and me. The raw datasets composed of three tables, by which Table 1 and 2 provided here included the datasets of international amphibians trade between China and other countries were retrieved from CITES (https://trade.cites.org/). The data collected the record of international amphibians trade between 1986 and 2019. There is also a dataset of domestic illegal amphibians trade that was collected from court cases in China related with poaching of amphibians, retrieved from “China judgement online” (https://wenshu.court.gov.cn). The court cases were all reported between 2014 and 2022.
DOI: 10.17632/jx6hw8rryf.1
title: Appendix of marine geology

description: Appendix Fig. A1 PXRD pattern of L1-2 in the nodule E-DY54. Appendix Fig. A2 TEM inserted with the corresponding selected area electron diﬀraction (SAED) patterns (a, c) and FFT patterns (b, d) of L2 in nodules C-DY50 (a, b) and E-DY54 (c, d). Appendix Table A1 Individual microlayer geochemical data of the nodules analyzed.
DOI: 10.17632/jync67vtct.1
title: Treml2 manuscript

description: These data set include supplement data and raw data for the manuscript
DOI: 10.57780/esa-ijxy6m2
title: BepiColombo MPO-MAG Raw Data

description: This collection contains raw magnetic field vector data and housekeeping raw data obtained by the MPO-MAG magnetometer aboard the BepiColombo MPO s/c. All field values and housekeeping data are given in counts. The magnetic field is given in unit reference frame (urf). No calibration has bee applied. Files are separated by mission phases, housekeeping and science data, and sensors. For proper scientific research calibrated or derived data should be used once available. Raw data are intended to be used for diagnosis purpose only.
DOI: 10.57780/esa-j6orf17
title: BepiColombo MPO-MAG Derived Data

description: This collection contains derived magnetic field vector data obtained by the MPO-MAG magnetometer aboard the BepiColombo MPO s/c. All field values are calibrated data in nanotesla. Files are separated by type and mission phases. The magnetic field is given in indicated celestial coordinates (e.g. ECLIPJ2000: e2k) only
DOI: 10.17632/tdrbcyj6pm.1
title: Compositional data of the studied tourmaline from the Eastern Alps

description: Data S1 and S2 list detailed major element and B isotope composition data for the studied tourmalines from the Eastern Alps, respectively.
DOI: 10.57780/esa-oh695k6
title: BepiColombo MPO-MAG Partially Processed Data

description: This collection contains partially_processed magnetic field vector data and housekeeping data obtained by the MPO-MAG magnetometer aboard the BepiColombo MPO s/c. All field values and housekeeping data are given in counts. The magnetic field is given in unit reference frame (urf). No calibration has bee applied. Files are separated by mission phases, housekeeping and science data, and sensors. In contrast to the raw data, partially processed science data combine the magnetic field science data with housekeeping temperature data, clipping information and field compensation values in a common file. This preparation guarantees an easy and proper generation of calibrated data in a following step. Furhtermore, partially processed data contain flags for each vector indication any TM errors or instrument effects. For proper scientific research calibrated or derived data should be used once available. Partially processed Raw data are intended to be used for diagnosis purpose only. See EAICD for structure, filename conventions and further details.
DOI: 10.57780/esa-zjjzl72
title: BepiColombo MPO-MAG Calibrated Data

description: This collection contains calibrated magnetic field vector data and housekeeping data obtained by the MPO-MAG magnetometer aboard the BepiColombo MPO s/c. All field values are ground calibrated data in nanotesla and all housekeeping data are transformed to physical units. Files are separated by mission phases, housekeeping and science data, and sensors. The magnetic field is given in unit reference frame (urf), spacecraft coordinates (scf), or indicated celestial coordinates (e.g. ECLIPJ2000: e2k). These data were calculated using the results of the ground calibration only. This means that temperature dependent sensitivities, misalignment, and offsets of the instrument are taken into account. However, all s/c effects like time dependent disturbances by the s/c magnetic field are not eliminated yet. Only a stepwise constant estimate of the s/c field is subtracted using the static_offset calibration files. For proper scientific research derived data should be used once available. See EAICD for structure, filename conventions and further details. See Calibration_Report for questions concerning the calibration.
DOI: 10.17632/5znvshxhff.1
title: Mendeley Supplemental Table: Reimbursement Rates for Nail Biopsy vs Skin Shave Biopsy Procedure

description: Mendeley Supplemental Table: Reimbursement Rates for Nail Biopsy vs Skin Shave Biopsy Procedure
DOI: 10.6084/m9.figshare.24241621
title: Supplementary Material for: Two distinct characteristics of immune microenvironment in human hepatocellular carcinoma with Wnt/β-catenin mutations

description: Introduction Immunotherapy is becoming a promising approach for unresectable-hepatocellular carcinoma (HCC); the anti-tumor response is affected by the tumor microenvironment (TME). Although Wnt/β-catenin mutations are reported to cause non-inflamed phenotype, their role on TME remains controversial. We aimed to clarify the heterogeneity of immunophenotype in HCC with Wnt/β-catenin mutations. Methods This study includes 152 resected HCCs; mutations in the catenin beta-1, adenomatous polyposis coli, or AXIN1, or AXIN2 genes were defined as Wnt/β-catenin mutations. With hierarchical cluster analyses, TME were classified into inflamed or non-inflamed classes based on the gene expressions associated with T-cell activation. Expression profiles of molecules related to cell differentiation and biliary-stem cell markers were compared between the TME classes to investigate whether differences in tumor traits were associated with TME. Results Forty of 152 (26.3%) HCCs carried the Wnt/β-catenin mutations. Of these, 33 were classified as non-inflamed (33/40, 82.5%) and 7 as inflamed (7/40, 17.5%). Non-inflamed class was characterized by low number of CD3+, CD4+, and CD8+ cells on immunostaining, and high mRNA expressions of AXIN2 and GLUL, which are involved in the canonical Wnt/β-catenin signaling and hepatocyte differentiation, respectively. Non-inflamed tumors showed higher enhancement on the hepatobiliary-phase of gadolinium-ethoxybenzyl-diethylenetriamine (Gd-EOB-DTPA)-enhanced magnetic resonance imaging (MRI) compared to inflamed tumors. HCCs classified as inflamed class are revealed to have high numbers of CD3+, CD4+, and CD8+ tumor infiltrating lymphocytes on immunostaining. This class is associated with increased expression of anti-epithelial cell adhesion molecule (EpCAM) and FOXM1 accompanied by upregulation of genes related to interferon-gamma signaling, dendritic cell migration, regulatory T cells and MDSC activation and recognized as low enhancement nodule on Gd-EOB-DTPA-enhanced MRI. Conclusion Heterogeneity of tumor traits and TME was observed in HCC with Wnt/β-catenin mutation. The potential was indicated that tumor traits and TME are determined not only by the activation of the HNF4A but also by FOXM1, both of which are downstream transcription factor of the Wnt/β-catenin signaling pathway.