cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14932206
title: Electron microscopy (SBF-SEM and TEM) files and TrakEM2 project file for "Neuropeptide repertoire and 3D anatomy of the ctenophore nervous system"

description: Ctenophores are gelatinous marine animals famous for locomotion by ciliary combs. Due to the uncertainties of the phylogenetic placement of ctenophores and the absence of some key bilaterian neuronal genes, it has been hypothesized that their neurons evolved independently. Additionally, recent whole body single cell RNA sequencing (scRNAseq) analysis failed to identify ctenophore neurons using any of the known neuronal molecular markers. To reveal the molecular machinery of ctenophore neurons we have characterized the neuropeptide repertoire of the ctenophore <i>Mnemiopsis leidyi</i>. Using the machine learning NeuroPID tool we predicted 129 new putative neuropeptide precursors. Sixteen of them were localised to the subepithelial nerve net (SNN), sensory aboral organ (AO) and epithelial sensory cells (ESC) providing evidence that they are neuropeptide precursors. Four of these putative neuropeptides had a behavioral effect and increased the animals’ swimming velocity. Intriguingly, these putative neuropeptides finally allowed us to identify neuronal cell types in single cell transcriptomic data and reveal the molecular identity of ctenophore neurons. High resolution electron microscopy and 3D reconstructions of the nerve net underlying the comb plates confirmed a more than 100-year-old hypothesis of anastomoses between neurites of the same cell in ctenophores and revealed that they occur through a continuous membrane. Our work demonstrates the unique ultrastructure of the peptidergic nerve net and a rich neuropeptide repertoire of ctenophores supporting the hypothesis that the first nervous system(s) evolved as nets of peptidergic cells.
DOI: 10.5281/zenodo.5534769
title: Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020"

description: Source data for the model fitting code at https://doi.org/10.5281/zenodo.5525349, accompanying the article "<em>Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020</em>"
DOI: 10.5281/zenodo.5534768
title: Source data for "Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020"

description: Source data for the model fitting code at https://doi.org/10.5281/zenodo.5525349, accompanying the article "<em>Date of introduction and epidemiologic patterns of SARS-CoV-2 in Mogadishu, Somalia: estimates from transmission modelling of satellite-based excess mortality data in 2020</em>"
DOI: 10.6084/m9.figshare.16695571
title: tmp.broad_peaks.bw

description: ATAC
DOI: 10.6084/m9.figshare.16695571.v1
title: tmp.broad_peaks.bw

description: ATAC
DOI: 10.6084/m9.figshare.16688803
title: Bioko_IRS_rounds_mapsectorlevel.csv

description: The data set provides coverage at map-sector level during the last five rounds of IRS on Bioko Island (2017-2021)
DOI: 10.6084/m9.figshare.16688803.v2
title: Bioko_IRS_rounds_mapsectorlevel.csv

description: The data set provides coverage at map-sector level during the last five rounds of IRS on Bioko Island (2017-2021)
DOI: 10.6084/m9.figshare.16688803.v1
title: Bioko_IRS_rounds_mapsectorlevel.csv

description: The data set provides coverage at map-sector level during the last five rounds of IRS on Bioko Island (2017-2021)
DOI: 10.24431/rw1k5b0
title: Data related to the distribution, life history, and reproductive biology of capelin (Mallotus villosus) in northern Norton Sound, Alaska, June 2018

description: Capelin Mallotus villosus is a marine Arctic forage fish that, as an indicator species, responds quickly to environmental fluctuations; however, little is known about Capelin in Alaskan waters. The objective of this study was to better understand the distribution and life history of spawning Capelin in northern Norton Sound, Alaska. The dataset is compiled in 13 separate .csv files, each with clearly defined columns for the data, and one GPS (.kml) file of aerial survey data. Local traditional knowledge (LTK) information of historical capelin spawning areas was collected in November 2017 and aerial surveys were conducted from May through July 2018 to locate and estimate the size of offshore Capelin aggregations prior to spawning, identify the location and timing of spawning events, characterize spawning habitat, and collect actively spawning fish to examine life-history characteristics. Data consisted of 1. LTK of capelin spawning frequency, areas, and behavior in Nome and the villages of Brevig Mission and Elim were collected using semi-structured interviews, 2. spawning aggregation size, location, and timing from aerial surveys along the shoreline from, 3. spawning habitat characteristics and egg density using core samplers, 4. capelin size and age structure by sex, and 5. capelin reproductive biology (e.g., gonadosomatic index by sex and fecundity). Sediment samples were separated from deposited eggs in the laboratory using graded sieves and quantified by size, and eggs were counted and examined for stage of development. Capelin samples were identified by sex, measured for total length and wet mass, and otoliths were removed for aging. Gonads were removed, weighed (ratio of gonad mass to body mass = gonadosomatic index), and eggs were counted for fecundity estimated for females. Capelin samples from this project have been preserved in the Museum of the North and can be found here: http://arctos.database.museum/saved/Ressel_Sutton_Mallotus_villosus_NPRB
DOI: 10.3886/e114495v1-97500
title: Replication data for: Trends and Disparities in Leave Use under California's Paid Family Leave Program: New Evidence from Administrative Data

description: We use novel administrative data to study trends and disparities in usage of California's first-in-the-nation paid family leave (PFL) program. We show that take-up for both bonding with a new child and caring for an ill family member increased over 2005–2014. Most women combine PFL with maternity leave from the State Disability Insurance system, resulting in leaves longer than 6 weeks. Most men take less than the full 6 weeks of PFL. Individuals in the lowest earnings quartile and in small firms are the least likely to take leave. There are important differences in take-up across industries, especially for men.
DOI: 10.6084/m9.figshare.16695589
title: Daily productivity data

description: The file contains daily productivity (dayprod) for all sprayers who worked on the given date, by round.
DOI: 10.15785/sbgrid/846
title: X-Ray Diffraction data from Human thrombin:tsetse thrombin inhibitor complex, source of 7PHX structure

description: Human thrombin:tsetse thrombin inhibitor complex, source of 7PHX structure
DOI: 10.25345/c5fz87
title: MassIVE Reanalysis RMSV000000346.17 - CCMS ProteoCarta Maestro reanalysis of Enterococcus faecalis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Enterococcus faecalis (MSV000083784/PXD013885).
DOI: 10.25345/c5b54v
title: MassIVE Reanalysis RMSV000000346.16 - CCMS ProteoCarta Maestro reanalysis of Citrobacter freundii from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Citrobacter freundii (MSV000083784/PXD013885).
DOI: 10.25345/c56g4q
title: MassIVE Reanalysis RMSV000000346.19 - CCMS ProteoCarta Maestro reanalysis of Escherichia coli from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Escherichia coli (MSV000083784/PXD013885).
DOI: 10.25345/c52p01
title: MassIVE Reanalysis RMSV000000346.15 - CCMS ProteoCarta Maestro reanalysis of Enterobacter cloacae from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Enterobacter cloacae (MSV000083784/PXD013885).
DOI: 10.25345/c5xz8k
title: MassIVE Reanalysis RMSV000000346.18 - CCMS ProteoCarta Maestro reanalysis of Klebsiella aerogenes from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Klebsiella aerogenes (MSV000083784/PXD013885).
DOI: 10.25345/c5t55k
title: MassIVE Reanalysis RMSV000000346.20 - CCMS ProteoCarta Maestro reanalysis of Klebsiella pneumoniae from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Klebsiella pneumoniae (MSV000083784/PXD013885).
DOI: 10.25345/c5pg42
title: MassIVE Reanalysis RMSV000000346.23 - CCMS ProteoCarta Maestro reanalysis of Pseudomonas aeruginosa from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Pseudomonas aeruginosa (MSV000083784/PXD013885).
DOI: 10.25345/c5jp1r
title: MassIVE Reanalysis RMSV000000346.21 - CCMS ProteoCarta Maestro reanalysis of Staphylococcus haemolyticus from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Staphylococcus haemolyticus (MSV000083784/PXD013885).
DOI: 10.25345/c5dz8x
title: MassIVE Reanalysis RMSV000000346.22 - CCMS ProteoCarta Maestro reanalysis of Proteus mirabilis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Proteus mirabilis (MSV000083784/PXD013885).
DOI: 10.25345/c5984k
title: MassIVE Reanalysis RMSV000000346.24 - CCMS ProteoCarta Maestro reanalysis of Klebsiella oxytoca from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Klebsiella oxytoca (MSV000083784/PXD013885).
DOI: 10.25345/c55g2n
title: MassIVE Reanalysis RMSV000000346.26 - CCMS ProteoCarta Maestro reanalysis of Staphylococcus saprophyticus from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Staphylococcus saprophyticus (MSV000083784/PXD013885).
DOI: 10.25345/c51r9t
title: MassIVE Reanalysis RMSV000000346.25 - CCMS ProteoCarta Maestro reanalysis of Staphylococcus epidermidis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Staphylococcus epidermidis (MSV000083784/PXD013885).
DOI: 10.25345/c5wz7w
title: MassIVE Reanalysis RMSV000000346.27 - CCMS ProteoCarta Maestro reanalysis of Staphylococcus aureus from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Staphylococcus aureus (MSV000083784/PXD013885).
DOI: 10.25345/c5s859
title: MassIVE Reanalysis RMSV000000346.29 - CCMS ProteoCarta Maestro reanalysis of Streptococcus mitis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Streptococcus mitis (MSV000083784/PXD013885).
DOI: 10.25345/c5ng20
title: MassIVE Reanalysis RMSV000000346.28 - CCMS ProteoCarta Maestro reanalysis of Streptococcus agalactiae from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset) [launched by 36fc2cf25bb244aba54b548ebc9496b9]
title: CCMS ProteoCarta open modification search for modified peptide variants (Maestro) reanalysis of Streptococcus agalactiae (MSV000083784/PXD013885).
DOI: 10.5281/zenodo.5534983
title: Rockfish Genome Project Data V1

description: Annotation files and scaffolds for genomes generated for the Rockfish Genome Project
DOI: 10.5281/zenodo.5534982
title: Rockfish Genome Project Data V1

description: Annotation files and scaffolds for genomes generated for the Rockfish Genome Project
DOI: 10.5517/ccdc.csd.cc26s2cg
title: CCDC 2048925: Experimental Crystal Structure Determination

description: Related Article: Takafumi Ide, Kaibo Feng, Charlie F. Dixon, Dawei Teng, Joseph R. Clark, Wei Han, Chloe I. Wendell, Vanessa Koch, M. Christina White|2021|J.Am.Chem.Soc.|143|14969|doi:10.1021/jacs.1c06335
DOI: 10.5517/ccdc.csd.cc26s2dh
title: CCDC 2048926: Experimental Crystal Structure Determination

description: Related Article: Takafumi Ide, Kaibo Feng, Charlie F. Dixon, Dawei Teng, Joseph R. Clark, Wei Han, Chloe I. Wendell, Vanessa Koch, M. Christina White|2021|J.Am.Chem.Soc.|143|14969|doi:10.1021/jacs.1c06335
DOI: 10.5517/ccdc.csd.cc27wwwx
title: CCDC 2082390: Experimental Crystal Structure Determination

description: Related Article: William Foley, Hadi Arman, Ghezai T. Musie|2021|J.Inorg.Biochem.|225|111589|doi:10.1016/j.jinorgbio.2021.111589
DOI: 10.25345/c5hs03
title: MassIVE Reanalysis RMSV000000346.30 - CCMS ProteoCarta MS-GF+ reanalysis of Streptococcus mitis from Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning (DDA dataset)
title: CCMS ProteoCarta database search (MSGF+) reanalysis of Streptococcus mitis (MSV000083784/PXD013885).
DOI: 10.6084/m9.figshare.16676842.v2
title: Copy of Correlations between allocation to foliar phosphorus fractions and maintenance of photosynthetic integrity in six mangrove populations as affected by chilling.csv

description: ●Chilling restrains the distribution of mangroves. We tested whether foliar phosphorus (P) fractions and gene expression are associated with cold tolerance in mangrove species.●We exposed seedlings of six mangrove populations from different latitudes to favorable, chilling and recovery treatments, and measured their foliar P concentrations and fractions, photochemistry, night-time respiration, and gene expression. ●A <i>Kandelia obovata </i>(26.45ºN; KO) population completely and a <i>Bruguiera gymnorhiza</i> (21.50ºN; BGG) population partially (30%) survived chilling. <i>Avicennia marina</i> (24.29ºN), and other <i>B. gymnorhiza</i> (26.66ºN, 24.40ºN and 19.62ºN) populations died after chilling. Photosystems of KO and photosystem I of BGG were least injured. Following chilling, leaf P fractions, except nucleic acid P in three populations declined, and photoinhibition and night-time respiration increased in all populations, with the greatest impact in <i>B. gymnorhiza</i>. Leaf nucleic acid P was positively correlated with photochemical efficiency during recovery and night-time respiration across populations for each treatment.●Relatively high concentrations of nucleic acid P and metabolite P were associated with stronger chilling tolerance in <i>K. obovata</i>. <i>Bruguiera gymnorhiza</i> exhibited relatively low concentrations of organic P in favorable and chilling conditions, but its partially survived population showed stronger compensation in nucleic acid P and Pi concentrations and gene expression during recovery.
DOI: 10.26186/145767
title: Spatial enablement for data and metadata User Guides and Best Practices

description: The pace, with which government agencies, researchers, industry, and the public need to react to national and international challenges of economic, environmental, and social natures, is constantly changing and rapidly increasing. Responses to the global COVID-19 pandemic event, the 2020 Australian bushfire and 2021 flood crisis situations are recent examples of these requirements.

Decisions are no longer made on information or data coming from a single source or discipline or a solitary aspect of life: the issues of today are too complex. Solving complex issues requires seamless integration of data across multiple domains and understanding and consideration of potential impacts on businesses, the economy, and the environment.

Modern technologies, easy access to information on the web, abundance of openly available data shifts is not enough to overcome previous limitations of dealing with data and information. Data and software have to be Findable, Accessible, Interoperable and Reusable (FAIR), processes have to be transparent, verifiable and trusted.

The approaches toward data integration, analysis, evaluation, and access require rethinking to:
- Support building flexible re-usable and re-purposeful data and information solutions serving multiple domains and communities.
- Enable timely and effective delivery of complex solutions to enable effective decision and policy making.

The unifying factor for these events is location: everything is happening somewhere at some time. Inconsistent representation of location (e.g. coordinates, statistical aggregations, and descriptions) and the use of multiple techniques to represent the same data creates difficulty in spatially integrating multiple data streams often from independent sources and providers. To use location for integration, location information needs to be embedded within the datasets and metadata, describing those datasets, so those datasets and metadata would become ‘spatially enabled’.
DOI: 10.6084/m9.figshare.16676842.v4
title: Correlations between allocation to foliar phosphorus fractions and maintenance of photosynthetic integrity in six mangrove populations as affected by chilling.csv

description: ●Chilling restrains the distribution of mangroves. We tested whether foliar phosphorus (P) fractions and gene expression are associated with cold tolerance in mangrove species.●We exposed seedlings of six mangrove populations from different latitudes to favorable, chilling and recovery treatments, and measured their foliar P concentrations and fractions, photochemistry, night-time respiration, and gene expression. ●A <i>Kandelia obovata </i>(26.45ºN; KO) population completely and a <i>Bruguiera gymnorhiza</i> (21.50ºN; BGG) population partially (30%) survived chilling. <i>Avicennia marina</i> (24.29ºN), and other <i>B. gymnorhiza</i> (26.66ºN, 24.40ºN and 19.62ºN) populations died after chilling. Photosystems of KO and photosystem I of BGG were least injured. Following chilling, leaf P fractions, except nucleic acid P in three populations declined, and photoinhibition and night-time respiration increased in all populations, with the greatest impact in <i>B. gymnorhiza</i>. Leaf nucleic acid P was positively correlated with photochemical efficiency during recovery and night-time respiration across populations for each treatment.●Relatively high concentrations of nucleic acid P and metabolite P were associated with stronger chilling tolerance in <i>K. obovata</i>. <i>Bruguiera gymnorhiza</i> exhibited relatively low concentrations of organic P in favorable and chilling conditions, but its partially survived population showed stronger compensation in nucleic acid P and Pi concentrations and gene expression during recovery.
DOI: 10.6084/m9.figshare.16676842.v3
title: Copy of Correlations between allocation to foliar phosphorus fractions and maintenance of photosynthetic integrity in six mangrove populations as affected by chilling.csv

description: ●Chilling restrains the distribution of mangroves. We tested whether foliar phosphorus (P) fractions and gene expression are associated with cold tolerance in mangrove species.●We exposed seedlings of six mangrove populations from different latitudes to favorable, chilling and recovery treatments, and measured their foliar P concentrations and fractions, photochemistry, night-time respiration, and gene expression. ●A <i>Kandelia obovata </i>(26.45ºN; KO) population completely and a <i>Bruguiera gymnorhiza</i> (21.50ºN; BGG) population partially (30%) survived chilling. <i>Avicennia marina</i> (24.29ºN), and other <i>B. gymnorhiza</i> (26.66ºN, 24.40ºN and 19.62ºN) populations died after chilling. Photosystems of KO and photosystem I of BGG were least injured. Following chilling, leaf P fractions, except nucleic acid P in three populations declined, and photoinhibition and night-time respiration increased in all populations, with the greatest impact in <i>B. gymnorhiza</i>. Leaf nucleic acid P was positively correlated with photochemical efficiency during recovery and night-time respiration across populations for each treatment.●Relatively high concentrations of nucleic acid P and metabolite P were associated with stronger chilling tolerance in <i>K. obovata</i>. <i>Bruguiera gymnorhiza</i> exhibited relatively low concentrations of organic P in favorable and chilling conditions, but its partially survived population showed stronger compensation in nucleic acid P and Pi concentrations and gene expression during recovery.