cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/db332ycbb9
title: Public Opinion and Foreign Policy: Sentiment Analysis of Indonesian Public on X Social Media Towards Palestine-Israeli Conflict by Naïve Bayes and Support Vector Machine (SVM) Approach

description: This data underscores the importance of public opinion in shaping foreign policy, with a specific focus on Indonesia's position on the Palestinian-Israeli conflict. Indonesia's steadfast support for Palestine is widely acknowledged. This research is crucial in understanding the significant impact of Indonesian public opinion on the Palestine-Israel conflict and the strength of Indonesia's foreign and energy policy in this context. The research results show that, according to public comments on X platform, the support for Indonesian foreign policy towards Palestine is very strong. The Indonesian public's support aligns with the government's foreign policy, which also strongly supports Palestine.
DOI: 10.6084/m9.figshare.12932666.v1
title: Supplementary Material for: The Association of Introducing a Faecal Calprotectin Testing Pathway for Suspected Inflammatory Bowel Disease in Primary Care and Time to Diagnosis or Treatment

description: <b><i>Background:</i></b> Primary care faecal calprotectin (FC) was introduced in Leeds in 2014 to distinguish inflammatory bowel disease (IBD) from irritable bowel syndrome and with the hope that it may reduce time to IBD diagnosis and treatment. This study examines the association of FC with referral routes, time to diagnosis, and time to treatment. <b><i>Methods:</i></b> All patients newly referred to IBD clinics in 2013 and 2016 were studied. Data on referral routes and dates, FC, date of first treatment, and proxy outcomes for disease severity were collected. <b><i>Results:</i></b> In 248 patients, there were no differences between 2013 and 2016 cohorts regarding baseline data and disease severity. The number of direct referrals to gastroenterology rose from 3% (2013) to 17% (2016), whilst 10% were diagnosed during emergency admissions. Referrals via suspected cancer pathways remained high (38% in 2013, 28% in 2016), whilst many had initial investigations at independent centres (16% in 2013, 24% in 2016). Time from referral to diagnosis was similar between 2013 (0.77 month) and 2016 (1.10 months, <i>p</i> = 0.2). A total of 48 (33.3%) patients had FC checked prior to referral, and 37.5% of these were referred directly to gastroenterology. Time from diagnosis to treatment reduced from 1.37 months (2013) to 0.72 month (2016, <i>p</i> = 0.01). <b><i>Conclusion:</i></b> Patients present via a multitude of referral pathways, but FC was associated with increased direct referrals to gastroenterology. We found a variation in time to diagnosis and treatment depending on referral routes. Further work is required to ensure patients with suspected IBD get referred to IBD services in a timely manner.
DOI: 10.6084/m9.figshare.14368463.v1
title: HPDmobile H1 Image Data - hub RS5

description: Images from hub RS5 in one home, collected over 30 days. Images are grayscale, 32-by-32 pixels, and were taken every second.
DOI: 10.6084/m9.figshare.5234068.v4
title: American Rivers Dam Removal Database

description: American Rivers’ Dam Removal Database includes all dam removals in the United States (of which we have been made aware) in which a significant portion of the dam has been removed for the full height of the dam, such that ecological function, natural river flow and fish passage can be restored at the site. This database is revised and updated annually with information provided by contributors across the country. The database may be used by anyone provided that citation is given to American Rivers and the DOI link is included.
DOI: 10.6084/m9.figshare.17294390.v1
title: Monotonic/tuned numerosity, aggregate Fourier power, and non-numerical cues response model parameters

description: Fit parameters of monotonic and tune numerosity, aggregate Fourier power, and non-numerical cues neural response models to responses of voxels in each visual field map and numerosity map region of interest.
DOI: 10.6084/m9.figshare.24183702.v7
title: At & PN

description: Raw dataset
DOI: 10.6084/m9.figshare.24798855.v3
title: Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

description: Dataset supporting "Combinatorial prediction of therapeutic targets using causally-inspired neural networks"<b>Abstract: </b>Phenotype-driven approaches identify disease-counteracting compounds by analyzing the phenotypic signatures that distinguish diseased from healthy states. Here, we introduce PDGrapher, a causally inspired graph neural network (GNN) designed to predict combinatorial perturbagens (sets of therapeutic targets) capable of reversing disease phenotypes. Unlike methods that learn how perturbations alter phenotypes, PDGrapher solves the inverse problem of directly predicting the perturbagens needed to achieve a desired response by embedding disease cell states into networks, learning a latent representation of these states, and identifying optimal combinatorial perturbations. In experiments in nine cell lines with chemical perturbations, PDGrapher identified effective perturbagens in more test samples than competing methods. It also demonstrates competitive performance on ten genetic perturbation datasets. An advantage of PDGrapher is its direct prediction paradigm, in contrast to the indirect and computationally intensive models traditionally employed in phenotype-driven research. This approach accelerates training by up to 25 times compared to existing methods, providing a fast approach for identifying therapeutic perturbations and advancing phenotype-driven drug discovery.
DOI: 10.6084/m9.figshare.28872287.v1
title: Data and code for Weather and leaf age separately contribute to temporal shifts in phyllosphere fungal community structure in sagebrush

description: Data and code for Weather and leaf age separately contribute to temporal shifts in phyllosphere fungal community structure in sagebrush
DOI: 10.6084/m9.figshare.29198843.v1
title: <i>ST4</i><b>:</b> Number of differentially expressed genes for various contrasts

description: Human lung adenocarcinoma cells (A549) and human monocytic cells (THP-1) were infected with H3N23 influenza virus A virus. Transcriptome analysis were performed by next generation RNA sequencing of three replicates each for infected A549 cells at 4, 8 and 24h p.i. and infected THP-1 cells at 4, 8, 12 and 24h p.i., and corresponding set of non-infected controls. Using DESeq2 (version 2.7.9a, (45)) with thresholds log2=1 for log-fold change and adjusted p-value of &gt; 0.05, we identified many differentially expressed genes (DEGs) for various contrasts. The number of differentially expressed genes for various contrasts are shown here.
DOI: 10.6084/m9.figshare.27316002.v3
title: A spectral dataset for typical vegetation in the Qinghai Lake region.zip

description: From July to August, 2023, the author's team conducted extensive field measurements of vegetation spectra in the Qinghai Lake region, resulting in the acquisition of spectral curves for 103 typical ground vegetation species and the establishment of a spectral database for typical vegetation in this region. providing basic data support for subsequent remote sensing monitoring, ecological conservation, and ecological studies. Therefore, the construction of a spectral dataset for typical vegetation in the Qinghai Lake region holds significant scientific and practical value.
DOI: 10.6084/m9.figshare.28203014.v1
title: 2PFM dataset from MaskVSC

description: Two-photon fluorescence microscopy (2PFM) data, which corresponding to our paper "Masked Vascular-structure Segmentation and Completion in Retinal Images".The 2PFM data was acquired from ex-vivo rat retinas, where the rat was perfused with fluorescein-conjugated albumin and gelatin, and the retina was harvested and imaged with a custom-built 2PFM using a 16×, 0.8 numerical aperture objective. The annotation of retinal blood vessels, manually traced by a professional ophthalmologist in the raw images, serves as the ground truth. All 2D images are divided into a training set of 270 images and a testing set of 135 images, with a pixel resolution of 1024×1024. All procedures in this study were conducted in accordance to the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research.
DOI: 10.6084/m9.figshare.24559669.v2
title: Species richness and turnover

description: Data from the article "Elevation modulates the impacts of climate change on the Brazilian Cerrado flora" by Silva et al.
DOI: 10.6084/m9.figshare.25368253.v1
title: The experimental data of the synergy-complement control for transhumeral prostheses.

description: This dataset is supplement to the to-be-published work:Johannes Kühn, Tingli Hu, Alexander Tödtheide, Edmundo Pozo Fortunić, Elisabeth Jensen, and Sami Haddadin:The Synergy-Complement Control Approach for Seamless Limb-Driven Prostheses. Nature Machine Intelligence. 2024.All experimental data collected during the User Study in Virtual Reality. We also include the MATLAB scripts for reproducing Figure 6 in the main manuscript, as well as relevant Figures S6--S7 in the Supplementary Information. Additionally, a Read-me file is provided for additional guidance.
DOI: 10.6084/m9.figshare.7868261.v1
title: Supplementary Material for: Clinical Monitoring of Sacrococcygeal Teratoma

description: <b><i>Background:</i></b> Sacrococcygeal teratomas (SCT) are often highly vascularized and may result in high-output cardiac failure, polyhydramnios, fetal hydrops, and demise. Delivery is guided by the SCT to fetus volume ratio (SCTratio), SCT growth rate, and cardiac output indexed for weight (CCOi). <b><i>Methods:</i></b> We compared measurements and outcome in 12 consecutive fetuses referred with SCT. Adverse outcomes were: fetal surgery, delivery &lt; 32 gestational weeks or neonatal demise. Only SCTratio and CCOi were used to manage the cases. SCT vascularization index (VI%) was derived from the 3D virtual organ computer-aided analysis (VOCAL) software. The SCTModel (modified from acardiac twins) calculated a hypothetical SCT draining vein size and derived a risk line, using diameters of the superior and inferior vena cava, the azygous and umbilical veins. VI% and a model of systemic and umbilical venous volumes (SCTModel) were tested as indicators for outcome in SCT. <b><i>Results:</i></b> Fetuses were monitored from 20.1 to 36.4 gestational weeks and 5/12 had adverse outcomes: 1 had successful open fetal surgery at 23.8 weeks and delivered at term, 4 delivered at &lt; 32 weeks with 3/4 having neonatal demise between 25 and 29 weeks. VI% was significantly higher in cases with adverse outcomes (mean 10.3 [8.9–11.6] vs. 4.4 [3.4–5.3], <i>p</i> &lt; 0.0001). The additional fraction of the fetal cardiac output required to perfuse the SCT-draining vein (XSCO%) (<i>p</i> = 0.46), SCTratio (<i>p</i> = 0.08), and CCOi (<i>p</i> = 0.64) were not significant. All cases with adverse outcome had VI% &gt; 8%. The SCTModel risk line predicted nonadverse outcomes well but lacked data in 2/5 cases with adverse outcomes. <b><i>Conclusions:</i></b> VI% is a significant indicator of SCT cases with adverse outcomes and combined with SCTratio may guide timing of delivery better than current measures.
DOI: 10.6084/m9.figshare.9756428.v1
title: Raw data for periodontitis 2.xlsx

description: Periodontitis patients raw data sheet
DOI: 10.17632/56h8gp94fj
title: Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering

description: Raw deep sequencing data for 4D5 high throughput screen in 'Meta Learning Improves Robustness and Performance in Machine Learning-Guided Protein Engineering' by Minot & Reddy (2024)
DOI: 10.25421/yorksj.26541112.v1
title: Teacher educators interviews

description: Forms of knowledge alluded to in Initial Teacher Education policy papers in England and in ideas of ‘evidence-based practice’, tend to be formulaic and reductionist. They tend to impoverish ideas of teacher education and, therefore, children’s and young people’s education. At the same time, they can render invisible the complex, praxis-based knowledges developed and practised by teacher educators in preparing pre-service teachers for the complexities of teaching. In these interviews, teacher educators are questioned about how they develop knowledge for their practice and about the Core Curriculum Framework for Initial Teacher Education and reflect on what is missing from the Core Curriculum Framework
DOI: 10.17632/gvkddsfgsj
title: জ্যোতিরিন্দ্রনাথ ঠাকুরের নাটকে জাতীয়তার প্রসঙ্গঃ বিশ্লেষণ ও পর্যালোচনা

description: জ্যোতিরিন্দ্রনাথ ঠাকুরের নাটক—উনিশ শতকের লেখকদের প্রায় সবাই বিষয়বস্তুর জন্য দ্বারস্থ হয়েছেন ইতিহাসের। তখন কন্টার, স্টুয়ার্ট, জেমস টেড প্রমুখের ইতিহাস গ্রন্থ বাঙালি লেখক-পাঠক সমাজে বিশেষ জনপ্রিয়। প্রকৃতপক্ষ এইসব ইতিহাস গ্রন্থে ইতিহাসের চেয়েও বেশি ছিল লেখকদের ব্যক্তিগত আবেগ-অনুভূতির প্রকাশ। বাঙালি লেখকবৃন্দ তাদের ব্যক্তিগত মানস-প্রবণতার অনুসরণেই কেউ গ্রহণ করেছেন কন্টার আর কেউ বা জেমস টড। যেমন ভূদেব মুখােপাধ্যায় হিন্দু কলেজের ছাত্র থাকাকালে এক ইংরেজ শিক্ষকের হিন্দুদের স্বদেশানুরাগ নেই এমন উক্তিতে যারপরনাই ব্যথিত হন। এখানেই নিহিত ছিল তাঁর স্বদেশানুরাগের ভিত্তি যার প্রেরণা এই লেখকের পরবর্তীকালের সাহিত্যচর্চায় প্রভাব ফেলে। এজন্যই তিনি কন্টারের ‘দ্য মারহাট্টা চিফ’ গ্রন্থের শিবাজী চরিত্রের একনিষ্ঠ স্বদেশানুরাগের প্রাবল্য দ্বারা আকৃষ্ট হন এবং তাঁর ঐতিহাসিক উপন্যাসের বিষয় হিসেবে বেছে নেন কন্টারের ইতিহাস গ্রন্থ।

অনুরূপভাবে বঙ্কিমচন্দ্রের মানস অভিরুচি তাঁকে টডের ইতিহাস গ্রন্থ অনুসরণের প্রেরণা দিয়েছে। টডের গ্রন্থে আছে রাজপুত জাতির বীরত্ব গাথা। রাজপুত জাতি শুধুমাত্র হিন্দুধর্মাবলম্বী বলেই অন্যান্য স্বাতন্ত্র্য সত্ত্বেও তার কাছে আদৃত। বঙ্কিমচন্দ্রের তীর স্বজাতি প্রেমই হিন্দুদের মহিমা কীর্তনের অনুষঙ্গে মুসলমানদের প্রতিপক্ষ হিসেবে দাঁড় করিয়েছিল। তিনি জাতীয়তার প্রণে বাঙ্গালিত্বের চেয়েও হিন্দুত্বের ধারণাকেই গুরুত্ব দিয়েছেন অধিক—
‘When the creative writers of the country who were Hindus were on the looked for the past glories of the nation they insinetively turned to Rajput Maharatta and Sikh history in which examples of Hindu chivalry and heroism were to be found in abundance… There they learned how Hindus and Muhammadans fought for political supremacy nand retold the stories through their creative imagination.’
DOI: 10.6084/m9.figshare.19947188.v1
title: SourceData.zip

description: <strong>Local features drive identity responses in macaque anterior face patches</strong> <br> <strong>The anterior macaque face patches have been assumed to represent face identity in a holistic manner. Here the authors show that the neural encoding of face identity in face patches AF and AM is instead driven principally by local features.</strong>
DOI: 10.6084/m9.figshare.3552534.v1
title: Supplement 1. R code for fitting the random-walk state-space model using particle filter MCMC.

description: File List adaptiveMH.r (md5: 1c7f3697e28dca0aceda63360930e29f)<br> adaptiveMHfuns.r (md5: cabc33a60ab779b954d853816c9e3cce)<br> PF.r (md5: eff6f6611833c86c1d1a8e8135af7e04) Description adaptiveMH.r – Contains a script for fitting a random-walk model with drift for Kangaroo population dynamics on the log-scale using particle filtering Metropolis Hastings with an initial adaptive phase. adaptiveMHfuns.r – Contains functions that are used for estimating and handling the normal mixture proposals. PF.r – Contains functions that perform the particle filtering and define the model.
DOI: 10.17632/7y76bwpbxx
title: AUTORECYCLER: AUTOMATIC WASTE CLASSIFICATION SYSTEM (PLASTIC, GLASS, CARDBOARD AND METAL) THROUGH ARTIFICIAL VISION.

description: Environmental protection has gained greater importance over time due to the negative impact and irreversible consequences that have occurred worldwide and stem from pollution. One of the great challenges faced in different parts of the world is the inadequate management and classification of solid waste. In order to contribute to tackling this issue, this paper proposes an automated sorting system based on artificial vision which allows recognition and separation of recyclable materials (Plastic, Glass, Cardboard and Metal) through a webcam connected in real time to the Nvidia® Jetson Nano™ 2GB programming board, which has a convolutional neural network (CNN) trained for the proper classification of waste. The system had a 95% accuracy in separating plastic, 96% in glass and metal, and 94% in cardboard. With this in mind, we conclude it contributes to the recycling effort, which has an impact on the reduction of environmental pollution worldwide.
DOI: 10.6084/m9.figshare.21509343.v3
title: Hydrophobicity of arginine leads to reentrant liquid-liquid phase separation behaviors of arginine-rich proteins

description: Intrinsically disordered proteins rich in cationic amino acid groups can undergo Liquid-Liquid Phase Separation (LLPS) in the presence of charge-balancing anionic counterparts. Arginine and Lysine are the two most prevalent cationic amino acids in proteins that undergo LLPS, with arginine-rich proteins observed to undergo LLPS more readily than lysine-rich proteins, a feature commonly attributed to arginine’s ability to form stronger cation-pi interactions with aromatic groups. Here, we show that arginine’s ability to promote LLPS is independent of the presence of aromatic partners, and that arginine-rich peptides, but not lysine-rich peptides, display re-entrant phase behavior at high salt concentrations. We further demonstrate that the hydrophobicity of arginine is the determining factor giving rise to the reentrant phase behavior and tunable viscoelastic properties of the dense LLPS phase. Controlling arginine-induced reentrant LLPS behavior using temperature and salt concentration opens avenues for the bioengineering of stress-triggered biological phenomena and drug delivery systems.
DOI: 10.6084/m9.figshare.24452380.v1
title: Trend estimation: Trend bound (Trend<sub>UB/LB</sub>), GRACE trend (Trend<sub>G</sub>), PI trend (Trend<sub>PI</sub>), and NPI trend (Trend<sub>NPI</sub>)

description: These data evaluate the range of TWS trend variations under natural conditions (Trend<sub>UB/LB</sub>, 1901-2014), GRACE trend (Trend<sub>G</sub>, 2003-2016), precipitation-induced trend (Trend<sub>PI</sub>, 2003-2016), and non-precipitation-induced trend (Trend<sub>NPI</sub>, 2003-2016) for global 266 basins. The range of TWS trend variations is also estimated for the overlap period (1979-2014) by JPL-GSWP3 and JPL-MSWEP, respectively.
DOI: 10.6084/m9.figshare.28451039.v1
title: COL data.xlsx

description: Genetic data from <i>COL2A1</i>
DOI: 10.6084/m9.figshare.29082527.v2
title: <b>Supplementary Table S2: </b>List of primers used for LAMP-based detection of sweetpotato viruses.

description: <b>Supplementary Table S2.</b> List of primers used for LAMP-based detection of sweetpotato viruses.Each primer set includes two external primers (F3 and B3), two internal primers (FIP and BIP), and two loop primers (LF and LB). FIP and BIP primers should preferably be HPLC-purified.
DOI: 10.6084/m9.figshare.7811963.v1
title: Data for "Extreme midsummer rainfall event drives early onset cyanobacterial bloom"

description: The prevalence and increasing global distribution of cyanobacteria-dominated harmful algal blooms is strongly associated with changing climatic patterns and local biogeochemical and hydrological processes. Changes to precipitation frequency and intensity, as predicted by current climate models, are likely to alter bloom development and composition due to nutrient fluxes and water column mixing. However, few studies have directly documented the effects of precipitation events on cyanobacterial composition, biomass, and toxin production. In this study, we describe an early-initiated cyanobacterial bloom in Conestogo Lake, a eutrophic flood control reservoir located in southwestern Ontario, following heavy rainfall and subsequent flooding within the catchment. A surge in bioavailable phosphorus resulted in biomass increases of <i>Aphanizomenon flos-aquae</i> throughout the reservoir approximately 2 weeks post-flooding. Anabaenopeptin-A and three microcystin congeners (microcystin-LR, -YR, and -RR) were detected at varying levels across sites during the bloom period, which lasted between 3 - 5 weeks. In addition, each of the three sampled sites varied in physical and chemical properties throughout the sampling campaign suggesting different eco-zones within the reservoir that may be influenced by flow. Together, these findings indicate that water column mixing and phosphorus concentrations were the key drivers for the early cyanobacterial bloom in Conestogo Lake and further highlight the complex relationship and variability within reservoir systems. Therefore, effective management goals and mitigation strategies for bloom-related water quality impairment must be both responsive and adaptive to the complexity of drivers affecting blooms.
DOI: 10.17632/5jfdb25jwr
title: Data for: Rheology and Stability of Nanoparticle-stabilized CO2 Foam for Fracturing Application

description: The raw data of different factors on nanoparticle-stabilized CO2 foam stability and foam rheology were included.
DOI: 10.17632/g62cp4dzk3
title: Excel SAMR and Creativity (Elaboration)

description: Excel data of SAMR framework and Creativity (elaboration)
DOI: 10.17632/w3cbnh3xdf
title: Monetary Policy Expectations Errors - Schmeling Schrimpf Steffensen - JFE

description: Data and code to reproduce main results in the paper Monetary Policy Expectation Errors
DOI: 10.6084/m9.figshare.24779091.v2
title: A Four-Dimension Gold Standard Dataset for Opinion Mining in Software Engineering

description: The authors have unveiled a gold standard dataset that aims to advance the realm of opinion mining within the software engineering domain. They've accomplished this by carefully selecting and annotating 2,000 Stack Overflow posts, employing the expertise of multiple human annotators. These posts have been meticulously categorized across four dimensions: sentiment analysis, identification of polar facts, categorization of aspects, and recognition of named entities.
DOI: 10.6084/m9.figshare.27984443.v2
title: NYOS_Barcoding_CTD_Data.xlsx

description: Dataset to accompany Hadjiargyrou et al., 2024, a DNA barcoding study of marine fish embryos and larvae collected in NY offshore waters between 2021-2023.Barcoding_results tab has all results, sampling sites, and indicates whether species determination was concluded via BOLD, BLAST, or visual ID. CTD_data tab shows surface temperature and salinity measurements from all sampled locations.Sequence data and specimen images are available on BOLD Systems as a public dataset, DS-NYOS.
DOI: 10.6084/m9.figshare.4772086.v4
title: Water depletion and curves around roots and soil

description: To the left of the root, water is depleted from films around soil particles where pore space water is first pulled from large pore spaces and water in thin films is strong adsorbed to the soil particles and scarcely available to the plant. Mucilage helps stabilize the water gradient as it has been observed water content can increase near the root surface when mucilage is available. Water curves on right side show the water content in soil near the root surface without (top) and with (bottom) mucilage.