cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc26mjgv
title: CCDC 2044557: Experimental Crystal Structure Determination

description: Related Article: Yong‐Gui Zhou, Yi‐Xuan Ding, Mu‐Wang Chen, Chang‐Bin Yu, Lei Sun 
|2023|U.S.Patents|||
description: Related Article: Yi‐Xuan Ding, Zhou‐Hao Zhu, Mu‐Wang Chen, Chang‐Bin Yu, Yong‐Gui Zhou|2022|Angew.Chem.,Int.Ed.|61|e202205623|doi:10.1002/anie.202205623
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27kg7j
title: CCDC 2072357: Experimental Crystal Structure Determination

description: Related Article: Yi‐Xuan Ding, Zhou‐Hao Zhu, Mu‐Wang Chen, Chang‐Bin Yu, Yong‐Gui Zhou|2022|Angew.Chem.,Int.Ed.|61|e202205623|doi:10.1002/anie.202205623
description: Related Article: Yong‐Gui Zhou, Yi‐Xuan Ding, Mu‐Wang Chen, Chang‐Bin Yu, Lei Sun 
|2023|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27v9w9
title: CCDC 2080871: Experimental Crystal Structure Determination

description: Related Article: Yong‐Gui Zhou, Yi‐Xuan Ding, Mu‐Wang Chen, Chang‐Bin Yu, Lei Sun 
|2023|U.S.Patents|||
description: Related Article: Yi‐Xuan Ding, Zhou‐Hao Zhu, Mu‐Wang Chen, Chang‐Bin Yu, Yong‐Gui Zhou|2022|Angew.Chem.,Int.Ed.|61|e202205623|doi:10.1002/anie.202205623
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28b62x
title: CCDC 2095168: Experimental Crystal Structure Determination

description: Related Article: Yong‐Gui Zhou, Yi‐Xuan Ding, Mu‐Wang Chen, Chang‐Bin Yu, Lei Sun 
|2023|U.S.Patents|||
description: Related Article: Yi‐Xuan Ding, Zhou‐Hao Zhu, Mu‐Wang Chen, Chang‐Bin Yu, Yong‐Gui Zhou|2022|Angew.Chem.,Int.Ed.|61|e202205623|doi:10.1002/anie.202205623
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13023/h6da-7054
title:  Diapause in eastern North American populations of Coccinella septempunctata (Coleoptera: Coccinellidae)

description: Experiments examined the effect of photoperiod on the expression of adult diapause in the Palearctic ladybird beetle Coccinella septempunctata, within 10 years of its discovery in North America. The study used beetles from two populations in eastern United States and focused on two aspects of diapause. First, the effects of daylength on the induction and depth (or duration) of diapause were examined by rearing and maintaining adult beetles from Tompkins County, New York,(approx. 42.4°N, 76.5°W) under six constant photoperiods until oviposition, death, or the passage of 125 days. Second, the seasonal progression of diapause maintenance and termination under natural conditions was examined by periodically (between October and April) testing the photoperiodic responses of overwintering adults that had been held out-of-doors; this test used beetles from Bergen County, New Jersey.

Two Data sets are included: (1) Photoperiodic effects on the pattern of reproduction (oviposition versus reproductive diapause) in female Coccinella septempunctata from Tompkins County, New York, USA. and (2) Seasonal effects on the progression of dormancy (diapause and postdiapause development) in Coccinella septempunctata held under natural conditions out-of-doors in Bergen County, New Jersey, USA.
DOI: 10.14459/2024mp1735150
title: Simplified DataCite compliant metadata templates and directory structures to manage research data

description: This dataset contains simplified DataCite compliant metadata templates and file/ folder 
organisation schemes. These standard templates and organisational schemes were defined to organise data of large Collaborative Research Centres (CRC) e.g. TRR277 AMC (a CRC funded by German Research Council) in a uniform logical way. The research workloads in such centres are usually divided in projects, work packages and distributed among various teams and institutions. The participants come from different domains with varying skills and competencies. They form interdisciplinary teams depending on the objectives. In these centres, researchers use and generate heterogeneous, large amount of data. Contrary to unorganised or selforganised form, data is subject to be managed in consistent and organised manners. Apart from maintaining data management plan (DMP), participants also maintain metadata, use specific information infrastructure(s) 
and comply with particular policy. The data and metadata in such centres are maintained using both files and digital form based applications.
The directory structure in this package offers schemes only for higher level hierarchies and allow data generators to freely define subsequent data 
organisation schemes. Metadata templates may be used for manual recording as well as basis for the definition by the software system offering 
custom template creation features for metadata and file like data organisation.
This data package also contains glossaries and description files. The contents of the package are based on the AMC specific policy, information infrastructure and the nature of data etc. Those AMC specific contents may be adopted by the concerned groups as per their own preferences.
DOI: 10.5281/zenodo.7887839
title: MX Raster Data For Compression

description: This data set, contains 6 raster experiment data sets, performed on and around a large lysozyme crystal sample using various beam intensities. These data are used to investigate several compressions (ratio and speed). 


 
description: Each tar file contains the hdf5 data related for each collection (master file and data files). All .h5 files are further compressed using bzip2. 
More details will be included. The H5 data files contain diffraction data from a sample in a loop format, for most raster data the area was larger than the loop size and the beam size used was 7x5 um2. H5 data files are compressed using bslz4 compression by default.
DOI: 10.5281/zenodo.7887840
title: MX Raster Data For Compression

description: This data set, contains 6 raster experiment data sets, performed on and around a large lysozyme crystal sample using various beam intensities. These data are used to investigate several compressions (ratio and speed). 


 
description: Each tar file contains the hdf5 data related for each collection (master file and data files). All .h5 files are further compressed using bzip2. 
More details will be included. The H5 data files contain diffraction data from a sample in a loop format, for most raster data the area was larger than the loop size and the beam size used was 7x5 um2. H5 data files are compressed using bslz4 compression by default.
DOI: 10.3886/e198421
title: Happiness Reduces Reported Satisfaction with Life

description: We tested whether influencing participants' affective states using videos would change their reported SWL in a representative sample of US adults (N=788). Those for whom the video improved affect reported 5.9% lower SWL compared to nonresponders (p=.008). This result was driven by young adults, women, individuals with high trait empathy as well as those with low agreeableness, conscientiousness, and neuroticism. These drivers were confirmed by quantifying feature importance using extreme gradient boosting. Estimating a mediation model of the change in affect on SWL showed these results continued to hold when controlling for personality traits and income. Our analyses show the importance of measuring and removing the influence of current affective states when measuring SWL
DOI: 10.6084/m9.figshare.25233676.v1
title: viruse sequences

description: The virus sequence is stored here.
DOI: 10.6084/m9.figshare.25233676
title: viruse sequences

description: The virus sequence is stored here.
DOI: 10.5281/zenodo.10393101
title: Data and R script used in: Artificial light changes visual perception by pollinators in a hawkmoth-plant interaction system

description: Dataset and full R script used in the data analysis of the paper "Artificial light changes visual perception by pollinators in a hawkmoth-plant interaction system".

Summary: Night-flying pollinators, such as hawkmoths, are particularly vulnerable to the global spread of urban artificial lighting which is changing nighttime environments worldwide, impacting organisms and their interactions. Incident light quality can alter flower and leaf color perception by insects, depending on the emission spectra of light sources and the spectral sensitivity of insects. We asked, using Manduca sexta visual models, whether color contrast against natural backgrounds is altered by artificial lights for flowers and leaves of 16 plant species with an estimated long history of coevolution with hawkmoth pollinators. Specifically, we compared the perception of flowers and leaves by hawkmoths under artificial lights, including light-emitting diodes (5000 K LED), mercury vapor (MV), and high-pressure sodium (HPS) artificial lights, with the perception under natural illuminations. The models we implemented estimate that LED and HPS lighting change hawkmoth perception of flowers and leaves, with color loci appearing nearer to each other in hawkmoths perceptual space than they would be under natural nighttime conditions. Receptor Noise Limited models show that under the different lighting conditions hawkmoths would still discriminate flowers from their leaves in most but not all species. Consequently, artificial lights likely alter perception by hawkmoths of floral and leaf signals possibly affecting interactions and fitness of plants and pollinators. Our results emphasize the intricate and insidious ways in which human-made environments impact species interactions. Further studies should confirm whether light pollution represents a novel selective force to nocturnal interacting partners as emerging evidence suggests. Addressing the effects of artificial lighting is crucial for designing infrastructure development strategies that minimize these far-reaching effects on ecosystem functioning.
DOI: 10.5281/zenodo.10393102
title: Data and R script used in: Artificial light changes visual perception by pollinators in a hawkmoth-plant interaction system

description: Dataset and full R script used in the data analysis of the paper "Artificial light changes visual perception by pollinators in a hawkmoth-plant interaction system".

Summary: Night-flying pollinators, such as hawkmoths, are particularly vulnerable to the global spread of urban artificial lighting which is changing nighttime environments worldwide, impacting organisms and their interactions. Incident light quality can alter flower and leaf color perception by insects, depending on the emission spectra of light sources and the spectral sensitivity of insects. We asked, using Manduca sexta visual models, whether color contrast against natural backgrounds is altered by artificial lights for flowers and leaves of 16 plant species with an estimated long history of coevolution with hawkmoth pollinators. Specifically, we compared the perception of flowers and leaves by hawkmoths under artificial lights, including light-emitting diodes (5000 K LED), mercury vapor (MV), and high-pressure sodium (HPS) artificial lights, with the perception under natural illuminations. The models we implemented estimate that LED and HPS lighting change hawkmoth perception of flowers and leaves, with color loci appearing nearer to each other in hawkmoths perceptual space than they would be under natural nighttime conditions. Receptor Noise Limited models show that under the different lighting conditions hawkmoths would still discriminate flowers from their leaves in most but not all species. Consequently, artificial lights likely alter perception by hawkmoths of floral and leaf signals possibly affecting interactions and fitness of plants and pollinators. Our results emphasize the intricate and insidious ways in which human-made environments impact species interactions. Further studies should confirm whether light pollution represents a novel selective force to nocturnal interacting partners as emerging evidence suggests. Addressing the effects of artificial lighting is crucial for designing infrastructure development strategies that minimize these far-reaching effects on ecosystem functioning.
DOI: 10.14459/2024mp1735401
title: Considerations to conclude research work in line with FAIR principles and Open Science practices

description: At the end of a modern research work, researchers are also supposed to take a good care of concluding process of their research work. This data package consists of a document which provides guidelines and a checklist for self-review to ensure the highest standard of Research Data Management (RDM) and the alignment of the activities with FAIR principles and Open Science practices while concluding research work.
These guidelines and checklist were created for large Collaborative Research Centres (CRC) e.g. TRR277 AMC (a CRC funded by German Research Council). The data generated in such centres is considered big, broad and heterogeneous. It may range from surveys, lab experiments, simulations, data models to software code and hardware design as well as real world objects etc.
This document assumes that researchers are complying with research data management policy defined for TRR277 AMC available at https://doi.org/10.14459/2024mp1734393. And they are using official IT infrastructure e.g. TUM Workbench, Globus/DSS, mediaTUM and are
maintaining Data Management Plans (DMPs) available at https://doi.org/10.14459/2023mp1709465.
AMC specific policy and infrastructure assumptions as well as contents may be altered by the concerned groups as per their own policy, infrastructure etc. The contents of the document may also be conveniently adopted for Web/digital form applications.
DOI: 10.6084/m9.figshare.25233796
title: Supplementary Material for: Hydroxychloroquine-Induced Renal Phospholipidosis: Case Report and Review of Differential Diagnoses

description: <b><i>Introduction:</i></b> Renal phospholipidosis describes the accumulation of phospholipids in the lysosomes of kidney cells, in particular podocytes. Originally, this was described primarily in the context of the lysosomal storage disorder Fabry disease. It is now known that a variety of drugs can lead to the accumulation of lysosomal phospholipids. <b><i>Case Presentation:</i></b> We present the case of a 69-year-old female patient suffering chronic kidney disease and systemic lupus erythematosus who underwent a kidney biopsy because of a further increase in serum creatinine levels. There was no evidence of lupus nephritis, but electron microscopy showed zebra bodies as a morphological sign of phospholipidosis. This was most likely drug-induced after 25 years of continuous medication with hydroxychloroquine. A renal biopsy 2 years and 6 months earlier, when the renal function of the patient was distinctively better, showed no signs of renal phospholipidosis. Afterward, medication with hydroxychloroquine was discontinued, and renal function parameters remained stable in the 1-year course. <b><i>Conclusion:</i></b> This case raises the question of how severely impaired renal function affects the risk of hydroxychloroquine-induced renal phospholipidosis and underlines that hydroxychloroquine should be administered with caution in patients with kidney insufficiency. Moreover, we provide a review of the causes of renal phospholipidosis, which have been described in the literature and give an overview of possible differential diagnoses in cases with histologically proven phospholipidosis in renal biopsies.
DOI: 10.6084/m9.figshare.25233760
title: 20240217_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.25233760.v1
title: 20240217_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.3886/e198421v1
title: Happiness Reduces Reported Satisfaction with Life

description: We tested whether influencing participants' affective states using videos would change their reported SWL in a representative sample of US adults (N=788). Those for whom the video improved affect reported 5.9% lower SWL compared to nonresponders (p=.008). This result was driven by young adults, women, individuals with high trait empathy as well as those with low agreeableness, conscientiousness, and neuroticism. These drivers were confirmed by quantifying feature importance using extreme gradient boosting. Estimating a mediation model of the change in affect on SWL showed these results continued to hold when controlling for personality traits and income. Our analyses show the importance of measuring and removing the influence of current affective states when measuring SWL
DOI: 10.14459/2024mp1735412
title: Data models for data audit reports and their communication and support strategies

description: This package of dataset contains two data models and a template for data audit reports 
as well as communication and support strategy created for large Collaborative Research Centres (CRC) e.g. TRR277 AMC (a CRC funded by German Research Council). The research workloads in such centres are usually distributed in projects and work packages. The data generated in these research projects may range from surveys, lab experiments, simulations, data models to software code and hardware design as well as real world objects etc. Apart from maintaining data management plan (DMP), maintenance of metadata, compliance with particular research data policy and the use of specific information infrastructure e.g. in this case TUM Workbench, DSS/ Globus, mediaTUM are considered mandatory. Reports about data are 
generated for various reasons and in different forms in these centres.
The report template is in tabular form which is also suitable for spreadsheet formats, Web/digital form. Data models, one for project leaf and one for project node, are in JSON format. These are suitable for generating reports programmatically. The data types of values in data models have been represented using dummy corresponding values e.g. 1 for Number, true for Boolean etc. for easy understanding of the recipients.
Some of the contents of this package are based on AMC specific policy, infrastructure and the distribution of projects. Those contents may be modified by target groups as per their own policy, infrastructure and the distribution of workloads etc. The charts and diagrams representing statistics based on these reports may also be adopted as per preferences.
DOI: 10.5281/zenodo.7618896
title: Sensitivity analysis for an effective transfer of estimated material properties from cone calorimeter to horizontal flame spread simulations -- Dataset

description: This dataset is a supplementary resource for the article "Sensitivity analysis for an effective transfer of estimated material properties from cone calorimeter to horizontal flame spread simulations", published in the Fire Safety Journal.

This collection contains mostly Python and bash scripts used to create multiple FDS input files, run the simulations on a computer cluster, and post-process the simulation results for the global sensitivity analysis. 



Article_dataset.zip : contains all figures presented in the article, as well as the script files to generate them. The processed simulation outputs, and the complete simulations of the reference cases of the cone calorimeter and the horizontal flame spread are presented in this file.

SA_complete.zip : contains the general structure of directories and scripts used to run the fds simulations for the sensitivity analysis.

-----------------------------------------------

Article on the Fire Safety Journal: https://doi.org/10.1016/j.firesaf.2024.104116

Preprint on arXiv: https://doi.org/10.48550/arXiv.2310.02680

-----------------------------------------------

Acknowledgements:

We gratefully acknowledge the computing time granted through the project on the CoBra-system, funded by the German Federal Ministry of Education and Research with the grant number 13N15497. This research was partially funded by the German Federal Ministry of Education and Research with the grant number 13N15497.
DOI: 10.5281/zenodo.7618897
title: Sensitivity analysis for an effective transfer of estimated material properties from cone calorimeter to horizontal flame spread simulations -- Dataset

description: This dataset is a supplementary resource for the article "Sensitivity analysis for an effective transfer of estimated material properties from cone calorimeter to horizontal flame spread simulations", published in the Fire Safety Journal.

This collection contains mostly Python and bash scripts used to create multiple FDS input files, run the simulations on a computer cluster, and post-process the simulation results for the global sensitivity analysis. 



Article_dataset.zip : contains all figures presented in the article, as well as the script files to generate them. The processed simulation outputs, and the complete simulations of the reference cases of the cone calorimeter and the horizontal flame spread are presented in this file.

SA_complete.zip : contains the general structure of directories and scripts used to run the fds simulations for the sensitivity analysis.

-----------------------------------------------

Article on the Fire Safety Journal: https://doi.org/10.1016/j.firesaf.2024.104116

Preprint on arXiv: https://doi.org/10.48550/arXiv.2310.02680

-----------------------------------------------

Acknowledgements:

We gratefully acknowledge the computing time granted through the project on the CoBra-system, funded by the German Federal Ministry of Education and Research with the grant number 13N15497. This research was partially funded by the German Federal Ministry of Education and Research with the grant number 13N15497.
DOI: 10.5281/zenodo.10671535
title: Dataset related to article: IMMUNOLOGICAL RESPONSE AFTER SARS-COV-2 INFECTION AND MRNA VACCINES IN PATIENTS WITH MYASTHENIA GRAVIS TREATED WITH RITUXIMAB

description: Cytokines, chemokines and growth factor concentrations (pg/mL) obtained from a multiplex immunoassay performed by Bio-Plex Immunoassay using ProTM Human Cytokine 27-plex kit. The assay was performed in serum samples.
DOI: 10.5281/zenodo.10671536
title: Dataset related to article: IMMUNOLOGICAL RESPONSE AFTER SARS-COV-2 INFECTION AND MRNA VACCINES IN PATIENTS WITH MYASTHENIA GRAVIS TREATED WITH RITUXIMAB

description: Cytokines, chemokines and growth factor concentrations (pg/mL) obtained from a multiplex immunoassay performed by Bio-Plex Immunoassay using ProTM Human Cytokine 27-plex kit. The assay was performed in serum samples.