cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/2t-b1s4
title: Single cell sequencing of the mouse anterior palate reveals mesenchymal heterogeneity

description: Cleft palate is one of the most prevalent birth defects. Mice are useful for studying palate development because of their morphological and genetic similarities to humans. In mice, palate development occurs between embryonic days (E)11.5 to 15.5. Single cell transcriptional profiles of palate cell populations have been a valuable resource for the craniofacial research community, but we lack a single cell transcriptional profile for anterior palate at E13.5, at the transition from proliferation to shelf elevation. Here, a detailed single cell RNA sequencing analysis reveals heterogeneity in expression profiles of the cell populations of the E13.5 anterior palate. Mesenchymal populations spatially segregate into four domains. One of these mesenchymal populations expresses ligands and receptors distinct from the rest of the mesenchyme, suggesting that these cells have a unique function. RNAVelocity analysis shows two terminal cell states that contribute to either the proximal or distal palatal regions emerge from a single progenitor pool. This single cell resolution expression data and detailed analysis from E13.5 anterior palate provides a powerful resource for mechanistic insight into secondary palate morphogenesis for the craniofacial research community.
DOI: 10.5258/soton/d2553
title: Dataset in support of the Southampton doctoral thesis 'Development of a miniaturised system for the high throughput investigations of biofilm responses to antimicrobial agents'

description: This dataset (47.3GB) is available on request please complete the request form at https://library.soton.ac.uk/datarequest DESCRIPTION OF THE DATA 1. Images of biofilms grown by three different assays: static micro-title plate assay, dynamic assay in drip flow reactor, dynamic biofilms grown by designed and fabricated device. Images include developed biofilms after 24 hours, 48 hours and 72 hours and after exposure to different reagents. 2.Excel file of data obtained from ImageJ software for biological images analysis. 3.Autodesk 123D files of device development steps.
DOI: 10.5281/zenodo.7112455
title: Water depth observed in front of lake-terminating glaciers in Patagonia

description: This is the dataset of water depth observed in front of O'Higgins, Upsala, Viedma, and Tyndall glaciers in southern Patagonia. Data format: Latitude [deg], Longitude [deg], Depth [m]
DOI: 10.5281/zenodo.7112456
title: Water depth observed in front of lake-terminating glaciers in Patagonia

description: This is the dataset of water depth observed in front of O'Higgins, Upsala, Viedma, and Tyndall glaciers in southern Patagonia. Data format: Latitude [deg], Longitude [deg], Depth [m]
DOI: 10.17632/hkgfjbm959.1
title: Revealing microbial diversity of novel misos through metagenomics approaches

description: 19 metagenome-assembled genomes (MAGs) were reconstituted from six novel misos
DOI: 10.17632/y663bvvv9f.1
title: Data sequences

description: Nucleotide sequeces data file from: olecular and phylogenetic analysis of HIV-1 subtype C in Bahia state, northeastern Brazil.
Authros: Rodrigo Cunha Oliveira, Juliana Sacramento Mota de Souza, Luiz Carlos Júnior Alcântara, Monick Lindenmeyer Guimarães, Carlos Brites and Joana Paixão Monteiro Cunha.
DOI: 10.17632/y663bvvv9f.2
title: Data sequences

description: Nucleotide sequeces data file from: molecular and phylogenetic analysis of HIV-1 subtype C in Bahia state, northeastern Brazil.
Authros: Rodrigo Cunha Oliveira, Juliana Sacramento Mota de Souza, Luiz Carlos Júnior Alcântara, Monick Lindenmeyer Guimarães, Carlos Brites and Joana Paixão Monteiro Cunha.
DOI: 10.34740/kaggle/dsv/5134246
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.17632/n8827ssnv7.3
title: A spatio-temporal dataset of forest mensuration for the analysis of tree species structure and diversity in semi-natural mixed floodplain forests

description: We performed replicated, repeated-measures data of height, diameter and vitality at tree level to allow analysis of spatial and temporal structure and diversity in a semi-natural mixed floodplain forest in Italy. Three inventories were performed in 1995, 2005 and 2016 in three ~1 ha plots with varying soil moisture regimes. The use of replicated, repeated-measures data rather than chronosequences allows the examination of true changes in spatial pattern processes through time in this forest type.
DOI: 10.17632/ghc3p5zxh8.1
title: Stability of Cu(InxGa1-x)Se2 Solar Cells Utilizing RbF Post-Deposition Treatment Under a Sulfur Atmosphere

description: This data includes temperature-dependent current-voltage data and external quantum efficiency data. Data is available for fresh and aged conditions of two samples: a reference CIGS solar cell and a RbF+S treated CIGS solar cell.
DOI: 10.17632/spvxfsmkps.1
title: PPK of FSH

description: Data for FSH PPK model building
DOI: 10.17632/c3v9jvtckx.1
title: Survey Data on Factors Affecting Parents' Decisions in Choosing an Integrated Islamic Primary School

description: This data is the result of being processed statistically about the factors that affecting parents' decisions in choosing an integrated Islamic elementary school in Indonesia. The type of variable given is in accordance with the decision to choose a school. There are 8 variables given, namely Religion, Facilities, School Culture, Learning Quality, School Programs, Teacher Quality, School Image, and School Location. Data obtained by questionnaire conversion to 100 parents of students who have just been accepted by the integrated Islamic elementary school.
DOI: 10.17632/c3v9jvtckx.2
title: Survey Data on Factors Affecting Parents' Decisions in Choosing an Integrated Islamic Elementary School

description: This data is the result of being processed statistically about the factors that affecting parents' decisions in choosing an integrated Islamic elementary school in Indonesia. The type of variable given is in accordance with the decision to choose a school. There are 8 variables given, namely Religion, Facilities, School Culture, Learning Quality, School Programs, Teacher Quality, School Image, and School Location. Data obtained by questionnaire conversion to 100 parents of students who have just been accepted by the integrated Islamic elementary school.
DOI: 10.17632/c3v9jvtckx.3
title: Survey Data on Factors Affecting Parents' Decisions in Choosing an Integrated Islamic Elementary School

description: This data is the result of being processed statistically about the factors that affecting parents' decisions in choosing an integrated Islamic elementary school in Indonesia. The type of variable given is in accordance with the decision to choose a school. There are 8 variables given, namely Religion, Facilities, School Culture, Learning Quality, School Programs, Teacher Quality, School Image, and School Location. Data obtained by questionnaire conversion to 100 parents of students who have just been accepted by the integrated Islamic elementary school.
DOI: 10.17632/628j8mhszb.1
title: IPMDSP Supplementary Data

description: Integrated production, maintenance, and distribution scheduling problem
DOI: 10.17632/5ydbc82mjr.1
title: Materials GAN

description: GAN to 'reconstruct' sthocastic heterogeneous materials
DOI: 10.17632/h8szt4hdyw.1
title: Visual reaction time scores (on the Batak Pro)

description: Hypothesis: In the world of sport reaction times are an important contributor to the success of an athlete. Some sports are more reactive than others and athletes may be required to react to multiple stimuli (team sports) or an opponent (tennis, combat sports, etc). These sports are classified as "open skill" sports. Other sports like swimming, rowing or athletic requires the athlete to only react to the start gun and they perform a very repetitive, cyclic motion. These sports are defined as "closed skill". Due to what seems like clear reactivity demands differing between sports we hypothesised that open skill athletes would perform better than the closed skill athletes on the Batak Pro (a LED light frame used for testing visual motor reaction times). We were also interested in the impact of height, wingspan and ape index (ratio or height and wingspan) on one's ability to score highly on the Batak Pro. The Batak Pro frame is large (height of 2m) so we hypothesised that taller athletes who posses a larger wingspan will perform better than their shorter counterparts on the Batak Pro protocols.
Methods: Each participant had one trial run and three testing trials. The averages and their top score scores are tracked in the data set attached. 
Results:  Our data on trained athletes (competing for more than 5 years) showed no significant difference in reaction times on 4 protocols on the Batak Pro. This data also shows no significant correlations between physical characteristics and performance on any of the Batak protocols.
Interpretations of this dataset: Accounting for the level of athletes being tested (not elite, national or international calibre) it suggests that no difference exists between open and closed skill athletes in reference to visual reaction times. This may be explained as either reactive ability is a trait that is developed and transferable through participation in sport and/or these athletes have yet not experienced reactive sport specific training in which elite calibre athletes may experience. It would be interesting to replicate this study on national/international level athletes.
Data Set Legend:
Classification: 1 = Closed Skill, 2 = Open Skill
Sport: 1 = Rowing, 2 = Swimming, 3 = Field Sports, 4 = Combat Sports
Batak Protocols: Accumulator, Evasion, 4 Corner Stretch-25 target, Mirror Race. See the Batak Pro manual for full descriptions of these protocols.
DOI: 10.5281/zenodo.7712068
title: Dataset for 3-Bromotetrazine

description: <strong>Dataset</strong> <strong>Preparation of 3-Bromotetrazine</strong> 3-Bromo-1,2,4,5-tetrazine: InChI=1S/C2HBrN4/c3-2-6-4-1-5-7-2/h1H Canonical SMILES: C1=NN=C(N=N1)Br EN300-27145343 CAS: 2396594-00-4 EC Number: 874-375-1 PubChem CID: 129875427 https://pubchem.ncbi.nlm.nih.gov/compound/129875427 This dataset is based on the original publication and data: Simon D. Schnell, Lukas V. Hoff, Advaita Panchagnula, Maximilian H. H. Wurzenberger, Thomas M. Klapötke, Simon Sieber, Anthony Linden, Karl Gademann*<br> Chem. Sci., 2020, 11, 3042, DOI: 10.1039/c9sc06169j <br> This dataset can be of use for the publication: <br> Lukas Vincent Hoff, Simon Schnell, Elie Benchimol, FabioPereira Foutinho, Andrea Tomio, Michel Rickhaus, and Karl Gademann*<br> Department of Chemistry, University of Zurich, Winterthurer Strasse 190, 8057 Zurich, Switzerland <br> Helv. Chim. Acta 2023, e202200198, DOI: 10.1002/hlca.202200198
DOI: 10.5281/zenodo.7712067
title: Dataset for 3-Bromotetrazine

description: <strong>Dataset</strong> <strong>Preparation of 3-Bromotetrazine</strong> 3-Bromo-1,2,4,5-tetrazine: InChI=1S/C2HBrN4/c3-2-6-4-1-5-7-2/h1H Canonical SMILES: C1=NN=C(N=N1)Br EN300-27145343 CAS: 2396594-00-4 EC Number: 874-375-1 PubChem CID: 129875427 https://pubchem.ncbi.nlm.nih.gov/compound/129875427 This dataset is based on the original publication and data: Simon D. Schnell, Lukas V. Hoff, Advaita Panchagnula, Maximilian H. H. Wurzenberger, Thomas M. Klapötke, Simon Sieber, Anthony Linden, Karl Gademann*<br> Chem. Sci., 2020, 11, 3042, DOI: 10.1039/c9sc06169j <br> This dataset can be of use for the publication: <br> Lukas Vincent Hoff, Simon Schnell, Elie Benchimol, FabioPereira Foutinho, Andrea Tomio, Michel Rickhaus, and Karl Gademann*<br> Department of Chemistry, University of Zurich, Winterthurer Strasse 190, 8057 Zurich, Switzerland <br> Helv. Chim. Acta 2023, e202200198, DOI: 10.1002/hlca.202200198
DOI: 10.5258/soton/d2546
title: Data for thesis entitled 'Blue Biotechnology:exploring and exploiting the reactions of marine photosynthesis'

description: Supporting data accompanying thesis The dataset consists of 6 excel files, 5 with the prefix 'Appendix' which form the ancillary data for Chapter 3. These include the read counts generated from the sequencing analysis, along with the results of the statistical analysis performed on them. The other file contains the raw physiological data used to create the graphs in Chapters 3,4 & 5. This data does not require specialist software to access. The data was generated over the course of the DY111 CUSTARD cruise (2019) to the Southern Ocean and at the NOC Southampton between 2018-2022. The data contained in Chapter 5 was published as: Alejandro Torrado, Hannah M Connabeer, Annika Röttig, Nicola Pratt, Alison J Baylay, Matthew J Terry, C Mark Moore, Thomas S Bibby, Directing cyanobacterial photosynthesis in a cytochrome c oxidase mutant using a heterologous electron sink, Plant Physiology, Volume 189, Issue 4, August 2022, Pages 2554–2566, https://doi.org/10.1093/plphys/kiac203
DOI: 10.5281/zenodo.7712047
title: PopulationGrowthDataset_Kigali

description: This dataset contains annual Sentinel-2 MSI composites (wet and dry season) for Kigali for the period 2016-2020. In addition, a metadata file containing population count at the grid level (100 x 100 m) for 2020 and at the census level (administrative units) for 2016 and 2020 is provided. Ancillary data such as the administrative boundaries of Kigali are also available.
DOI: 10.5281/zenodo.7712046
title: PopulationGrowthDataset_Kigali

description: This dataset contains annual Sentinel-2 MSI composites (wet and dry season) for Kigali for the period 2016-2020. In addition, a metadata file containing population count at the grid level (100 x 100 m) for 2020 and at the census level (administrative units) for 2016 and 2020 is provided. Ancillary data such as the administrative boundaries of Kigali are also available.
DOI: 10.6084/m9.figshare.22147916
title: Mechanism of MTO1 regulation of related gene expression in hypertrophic cardiomyopathy

description: This study was designed to examine the gene expression profile of MTO1-overexpressing rat cardiomyocytes. Here, RNA extraction and sequencing after lentivirus transfection of H9C2 cell lines was used to investigate whether MTO1 overexpression affects cardiomyocyte proliferation and apoptosis. <br> <br>
DOI: 10.6084/m9.figshare.22147916.v1
title: Mechanism of MTO1 regulation of related gene expression in hypertrophic cardiomyopathy

description: This study was designed to examine the gene expression profile of MTO1-overexpressing rat cardiomyocytes. Here, RNA extraction and sequencing after lentivirus transfection of H9C2 cell lines was used to investigate whether MTO1 overexpression affects cardiomyocyte proliferation and apoptosis. <br> <br>
DOI: 10.6084/m9.figshare.22241053.v1
title: Supplementary Material for: Predicting Individual Patient Platelet Demand in a Large Tertiary Care Hospital Using Machine Learning

description: <b><i>Introduction:</i></b> An increasing shortage of donor blood is expected, considering the demographic change in Germany. Due to the short shelf life and varying daily fluctuations in consumption, the storage of platelet concentrates (PCs) becomes challenging. This emphasizes the need for reliable prediction of needed PCs for the blood bank inventories. Therefore, the objective of this study was to evaluate multimodal data from multiple source systems within a hospital to predict the number of platelet transfusions in 3 days on a per-patient level. <b><i>Methods:</i></b> Data were collected from 25,190 (42% female and 58% male) patients between 2017 and 2021. For each patient, the number of received PCs, platelet count blood tests, drugs causing thrombocytopenia, acute platelet diseases, procedures, age, gender, and the period of a patient’s hospital stay were collected. Two models were trained on samples using a sliding window of 7 days as input and a day 3 target. The model predicts whether a patient will be transfused 3 days in the future. The model was trained with an excessive hyperparameter search using patient-level repeated 5-fold cross-validation to optimize the average macro F2-score. <b><i>Results:</i></b> The trained models were tested on 5,022 unique patients. The best-performing model has a specificity of 0.99, a sensitivity of 0.37, an area under the precision-recall curve score of 0.45, an MCC score of 0.43, and an F1-score of 0.43. However, the model does not generalize well for cases when the need for a platelet transfusion is recognized. <b><i>Conclusion:</i></b> A patient AI-based platelet forecast could improve logistics management and reduce blood product waste. In this study, we build the first model to predict patient individual platelet demand. To the best of our knowledge, we are the first to introduce this approach. Our model predicts the need for platelet units for 3 days in the future. While sensitivity underperforms, specificity performs reliably. The model may be of clinical use as a pretest for potential patients needing a platelet transfusion within the next 3 days. As sensitivity needs to be improved, further studies should introduce deep learning and wider patient characterization to the methodological multimodal, multisource data approach. Furthermore, a hospital-wide consumption of PCs could be derived from individual predictions.
DOI: 10.5281/zenodo.7454250
title: Dataset for modeling of binding modes of xanthine derivatives as allosteric inhibitors of MTHFD2

description: Dataset with structures from docking and MD simulation trajectories, and exploration of selectivity, of xanthine derived compounds targeting the allosteric site of MTHFD2 versus the isoform MTHFD1.
DOI: 10.5281/zenodo.7454249
title: Dataset for modeling of binding modes of xanthine derivatives as allosteric inhibitors of MTHFD2

description: Dataset with structures from docking and MD simulation trajectories, and exploration of selectivity, of xanthine derived compounds targeting the allosteric site of MTHFD2 versus the isoform MTHFD1.
DOI: 10.5517/ccdc.csd.cc2bcm3g
title: CCDC 2156115: Experimental Crystal Structure Determination

description: Related Article: Zhu Wu, Nikolai Hippchen, Jie Han, Lei Ji, Alexandra Friedrich, Ivo Krummenacher, Holger Braunschweig, Johannes Krebs, Michael Moos, Philipp Biegger, Olena Tverskoy, Steffen Maier, Christoph Lambert, Andreas Dreuw, Todd B. Marder, Jan Freudenberg, Uwe H. F. Bunz|2023|J.Org.Chem.|88|2742|doi:10.1021/acs.joc.2c02279
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bcyg4
title: CCDC 2156436: Experimental Crystal Structure Determination

description: Related Article: Bo Yang, Zhong-Duo Yang, Ke-Zhen Ma, Wen-Lin Guo, Tian-Hao Zhang, Tian-Kun Zhao|2023|Phytochemistry|209|113613|doi:10.1016/j.phytochem.2023.113613
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c7qq2
title: CCDC 2182174: Experimental Crystal Structure Determination

description: Related Article: Sinuo Geng, Huihui Li, Ziqiu Shen, Ziting Zhong, Xin Jiang Feng, Hua Lu|2023|Dyes Pigm.|213|111177|doi:10.1016/j.dyepig.2023.111177
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22241059
title: Niesslia parviseta [Genbank accession numbers]

description: Voucher data and GenBank accession numbers of sequences included in this study.
DOI: 10.6084/m9.figshare.22241059.v1
title: Niesslia parviseta [Genbank accession numbers]

description: Voucher data and GenBank accession numbers of sequences included in this study.
DOI: 10.57745/blvedq
title: Master_in vitro_exp2.tab

description: :unav
DOI: 10.57745/mhwj0m
title: Master_in vitro_exp1.tab

description: :unav
DOI: 10.57745/i477gi
title: Master_in vitro_exp3.tab

description: :unav
DOI: 10.6084/m9.figshare.22240897
title: Niesslia parviseta [combined nrIT, LSU and tef1]

description: Alignment of combined nrITS, LSU and <em>tef1</em> data set which was used for analyze the phylogenetic placement of <em>Niesslia parviseta </em>within the genus <em>Niesslia.</em>
DOI: 10.6084/m9.figshare.22240897.v1
title: Niesslia parviseta [combined nrIT, LSU and tef1]

description: Alignment of combined nrITS, LSU and <em>tef1</em> data set which was used for analyze the phylogenetic placement of <em>Niesslia parviseta </em>within the genus <em>Niesslia.</em>
DOI: 10.6084/m9.figshare.22043516.v1
title: Supplementary Material for: Circulating glypican-4 is a predictor of 24-month overall survival in metastatic breast cancer

description: Background & objective: Endocrine treatment combined with CDK4/6 inhibitors is the preferred treatment strategy in patients presenting with ER-positive/HER2-negative breast cancer, but the clinical course remains highly variable among individual patients. There is an unmet need for prognostic or predictive biomarkers in this important group of patients. Recently, we have identified circulating glypican-4 (GPC4) as a new biomarker of inferior outcomes in patients with metastatic colorectal cancer. The impact of plasma GPC4 levels on the survival of breast cancer patients is unknown and has been addressed in the present study. Methods: Our study included 47 patients with ER-positive/HER2-negative metastatic breast cancer prior to treatment with CDK4/6 inhibitors combined with endocrine therapy. The endpoint was overall survival (OS) at 24 months. GPC4 levels were measured in plasma using an enzyme-linked immunosorbent assay. Results: Increased circulating GPC4 levels were significantly linked to advanced age, postmenopausal state, visceral metastases, and invasive lobular carcinoma. During the two-year observational follow-up period, 25.5 % of patients died. The area under the receiver operating characteristic curve (ROC-AUC) analysis revealed an AUC of 0.713 [0.555-0.871]; P=0.029 for OS and an optimal cut-off value of GPC4 for predicting OS of 4.77 ng/mL. No patient showing GPC4 values below this cut-off died during the observational period. Cox regression analysis showed a hazard ratio of 2.14 [95% confidence interval: 1.24-3.67]; P=0.006 for one standard deviation change of plasma GPC4. Conclusions: In conclusion, our study suggests circulating GPC4 as a significant predictor of poor survival in metastatic breast cancer patients.
DOI: 10.34740/kaggle/dsv/5134414
title: 2021 World Population (updated daily)