cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0154107.10fu
title: SH0154107.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154108.10fu
title: SH0154108.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154109.10fu
title: SH0154109.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154110.10fu
title: SH0154110.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154111.10fu
title: SH0154111.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154112.10fu
title: SH0154112.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154113.10fu
title: SH0154113.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0154114.10fu
title: SH0154114.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.26022/ieda/112947
title: Isotope compositions of mid-ocean ridge basalts from the Kane-Atlantis segment, Mid-Atlantic Ridge

description: This data set includes newly measured Sr-Nd-Pb-Hf and U-Th isotope compositions for fresh axial basalts from the Mid-Atlantic Ridge, 24-30 ºN. The samples were collected during leg 207/2 (2012) of the R/V Knorr (C. Langmuir, J. Escartin chief scientists), by seafloor dredge and wax core. All samples were handpicked for fresh, unaltered glass and dissolved at the University of Nebraska-Lincoln and analyzed by NeptunePlus MC-ICP-MS at the University of Wyoming. Preliminary results indicate both a gradual along-axis geochemical variation and additional local variations in basalt isotope compositions.
DOI: 10.3535/m1v-r1l-2lx
title: Gnetum gnemonoides Brongn.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zy3-hwn-d5n
title: Gnetum parvifolium (Warb.) W.C.Cheng

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/c81-b30-s4a
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/40d-250-jh7
title: Euphrasia pectinata Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vsc-bke-8qg
title: Euphrasia pectinata Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.ukawbx
title: Occurrence Download

description: A dataset containing 709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 709 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106411-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2re-h6r-aj9
title: Gnetum latifolium var. latifolium

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zcm-20f-ds4
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15793708
title: QC Torsiondrive Dataset: OpenFF Rowley Biaryl v1.0

description: This is a TorsionDrive dataset consisting of biaryl torsions provided by Christopher Rowley. Originally used to benchmark OpenFF SMIRNOFF Parsley, but could also be useful for fitting.

 

Additional details can be found in the OpenFF QCA Dataset Submission page for this dataset.

 

General Information



* Description: A torsiondrive dataset of biaryl molecules.

* Purpose: Torsiondrives of biaryl molecules.

* Name: OpenFF Rowley Biaryl v1.0

* Dataset ID: 283

* Submitter: joshuahorton

* Number of unique molecules: 87 

* Number of torsion drives: 87


* Molecular weight (min, mean, max): 143.07, 167.02, 234.09

* Charges: 0.0, 1.0

* Elements: C, H, N, O, S

 
description: Manifest





OpenFF-Rowley-Biaryl-v1.0_torsiondrive_view.sqlite : QCFractal view of optimization dataset 283

docker_handle_dataset_views.tar.gz : Compressed docker image providing a notebook ready to view and handle the data

README.txt on how to launch the docker image and access the data





Instructions for Dataset Handling

This data is stored a an sqlite file the is directly readable with QCFractal as a dataset view. Because sqlite is a general format, this data may also be accessed in that way, where compressed contents are python picked json strings. To make viewing and handling the data straighforward, a docker image wiith a jupyter notebook entry has been provided.

Load the docker image with:

$ docker load -i docker_handle_dataset_views.tar.gz

A user can run the docker image to spawn the jupyter notebook.



$ mkdir views; mv *sqlite views/$ mkdir outputs$ docker run -p 8888:8888 -v ./views:/workspace/views -v ./outputs:/workspace/outputs docker_handle_dataset_views


The -p flag exposed the port 8888 inside the docker image to the port by the same name externally.The -v flag exposes a directory (in this case ./views, so put your dataset views there) to a directory inside the docker image so that the jupyter notebook and access them. The ./outputs directory provides another shared directory that can be useful to pass output files.If using a M* MAC, the flag --platform=linux/amd64 could be required.

Entering the URL that starts with http://127.0.0.1:8888... in a internet browser should lead to a jupyterlab instance.
DOI: 10.5281/zenodo.15793709
title: QC Torsiondrive Dataset: OpenFF Rowley Biaryl v1.0

description: This is a TorsionDrive dataset consisting of biaryl torsions provided by Christopher Rowley. Originally used to benchmark OpenFF SMIRNOFF Parsley, but could also be useful for fitting.

 

Additional details can be found in the OpenFF QCA Dataset Submission page for this dataset.

 

General Information



* Description: A torsiondrive dataset of biaryl molecules.

* Purpose: Torsiondrives of biaryl molecules.

* Name: OpenFF Rowley Biaryl v1.0

* Dataset ID: 283

* Submitter: joshuahorton

* Number of unique molecules: 87 

* Number of torsion drives: 87


* Molecular weight (min, mean, max): 143.07, 167.02, 234.09

* Charges: 0.0, 1.0

* Elements: C, H, N, O, S

 
description: Manifest





OpenFF-Rowley-Biaryl-v1.0_torsiondrive_view.sqlite : QCFractal view of optimization dataset 283

docker_handle_dataset_views.tar.gz : Compressed docker image providing a notebook ready to view and handle the data

README.txt on how to launch the docker image and access the data





Instructions for Dataset Handling

This data is stored a an sqlite file the is directly readable with QCFractal as a dataset view. Because sqlite is a general format, this data may also be accessed in that way, where compressed contents are python picked json strings. To make viewing and handling the data straighforward, a docker image wiith a jupyter notebook entry has been provided.

Load the docker image with:

$ docker load -i docker_handle_dataset_views.tar.gz

A user can run the docker image to spawn the jupyter notebook.



$ mkdir views; mv *sqlite views/$ mkdir outputs$ docker run -p 8888:8888 -v ./views:/workspace/views -v ./outputs:/workspace/outputs docker_handle_dataset_views


The -p flag exposed the port 8888 inside the docker image to the port by the same name externally.The -v flag exposes a directory (in this case ./views, so put your dataset views there) to a directory inside the docker image so that the jupyter notebook and access them. The ./outputs directory provides another shared directory that can be useful to pass output files.If using a M* MAC, the flag --platform=linux/amd64 could be required.

Entering the URL that starts with http://127.0.0.1:8888... in a internet browser should lead to a jupyterlab instance.
DOI: 10.3535/llz-9ra-zhr
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/wbn-ek6-mem
title: Gnetum ridleyi Gamble ex Markgr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/4rn-zpq-8mf
title: Gnetum ridleyi Gamble ex Markgr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/z5c-5m8-k1s
title: Euphrasia pectinata Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ln0-9eb-8p1
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.kwryru
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106410-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0fe-l8j-96e
title: Euphrasia pectinata Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xvr-ze0-tmj
title: Ocotea floribunda (Sw.) Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rc2-qy1-1tq
title: Ocotea floribunda (Sw.) Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/00q-7s5-xj1
title: Ocotea floribunda (Sw.) Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mrm-b1d-ke1
title: Ocotea floribunda (Sw.) Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/24y-y09-mcc
title: Erysimum leucanthemum (Stephan ex Willd.) B. Fedtsch.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nlc-7he-lwn
title: Erysimum leucanthemum (Stephan ex Willd.) B. Fedtsch.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/599-1nh-hnt
title: Erysimum leucanthemum (Stephan ex Willd.) B. Fedtsch.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/v9s-68c-7cw
title: Ocotea floribunda (Sw.) Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vdg-4sj-t76
title: Ocotea endresiana Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/0mf-23k-vdl
title: Erysimum leucanthemum (Stephan ex Willd.) B. Fedtsch.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j0v-0wa-g0w
title: Ocotea ekmanii O. C. Schmidt

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/3p4-b13-d9y
title: Ocotea foeniculacea Mez

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j2t-yhf-09y
title: Erysimum elbrusense Boiss.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/2vt-vtp-4tn
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rkr-kla-rgg
title: Euphrasia subexserta Benth.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/l82-g6r-1k2
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nth-qle-ehp
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/y4c-j5y-wq2
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.4wbpx5
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carassius auratus (Linnaeus, 1758)",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106412-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/0vx-1rj-a7q
title: Euphrasia portae subsp. italica (Wettst.) Yeo

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cnc-wyx-b05
title: Euphrasia trifida Poepp. ex Benth.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/267-e52-8cf
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/h4p-ed5-f7q
title: Euphrasia trifida Poepp. ex Benth.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xhx-pk8-grd
title: Euphrasia portae subsp. italica (Wettst.) Yeo

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/14d-xc8-ya4
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/aqx-ra6-spc
title: Euphrasia trifida Poepp. ex Benth.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/t4s-mm1-myk
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xqy-9ae-g3z
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/a0k-e9f-b2z
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j2z-yr3-1e6
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/9w8-rza-btl
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hf8-8yf-ta3
title: Euphrasia meiantha Clos

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hgv-dje-bk9
title: Myrsine coriacea subsp. coriacea

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kqb-zvc-hyb
title: Euphrasia cuspidata Host

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xrm-f87-2cn
title: Euphrasia philippii Wettst.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.