cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ys7tj2
title: Occurrence Download

description: A dataset containing 105365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "CoordinateUncertaintyInMeters 0.0-52.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Orchidaceae",
 "Year 2025-2026"
 ]
}

 The dataset includes 105365 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009141-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86c9tu
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present",
 "TaxonKey is Sesamia inferens"
 ]
}

 The dataset includes 31 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009152-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6tqjt
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiliotrichum rosmarinifolium",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 32 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009153-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8zryb
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cotoneaster adpressus",
 "Year 1970-2000"
 ]
}

 The dataset includes 315 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009154-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/k6.auckland.31144051
title: Java codes for code comprehension study

description: A repo of all the codes used for the study. Both refactored and non-refactored
DOI: 10.17608/k6.auckland.31144051.v1
title: Java codes for code comprehension study

description: A repo of all the codes used for the study. Both refactored and non-refactored
DOI: 10.15468/dl.4gp6gm
title: Occurrence Download

description: A dataset containing 3409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chondrilla juncea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 3409 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009156-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asj2pa
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chondropyxis halophila",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 38 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009158-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18348140
title: A Comprehensive Probabilistic Hazard Dataset from Climate to Catastrophe across Europe

description: Developed as part of the Horizon 2020 MYRIAD-EU project, this dataset provides a comprehensive collection of European probabilistic hazard metrics. It includes atmospheric, geological, and hydrological hazards ranging from droughts, wildfires, and heatwaves to earthquakes, tsunamis, and landslides, alongside various current and future projections for some of the hazards across various climate pathways. All data is aggregated at the NUTS3 level, with detailed descriptions available in the accompanying metadata CSV file.Within the project, these metrics are integrated with exposure data (e.g., capital stock, population, and GDP) to assess Exposure-at-Risk. Users can visualize and interact with this data via the Exposure-at-Risk Explorer hosted on the MYRIAD-EU Multi-Risk Toolkit.
DOI: 10.5281/zenodo.18348141
title: A Comprehensive Probabilistic Hazard Dataset from Climate to Catastrophe across Europe

description: Developed as part of the Horizon 2020 MYRIAD-EU project, this dataset provides a comprehensive collection of European probabilistic hazard metrics. It includes atmospheric, geological, and hydrological hazards ranging from droughts, wildfires, and heatwaves to earthquakes, tsunamis, and landslides, alongside various current and future projections for some of the hazards across various climate pathways. All data is aggregated at the NUTS3 level, with detailed descriptions available in the accompanying metadata CSV file.Within the project, these metrics are integrated with exposure data (e.g., capital stock, population, and GDP) to assess Exposure-at-Risk. Users can visualize and interact with this data via the Exposure-at-Risk Explorer hosted on the MYRIAD-EU Multi-Risk Toolkit.
DOI: 10.15468/dl.bt3vds
title: Occurrence Download

description: A dataset containing 9261 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyperoodon ampullatus"
 ]
}

 The dataset includes 9261 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009159-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z45s6g
title: Occurrence Download

description: A dataset containing 23791 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nekemias"
 ]
}

 The dataset includes 23791 records from 240 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009160-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkxmht
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chresta plantaginifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 49 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009162-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mffhs
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cotoneaster dielsianus",
 "Year 1970-2000"
 ]
}

 The dataset includes 331 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009163-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14601740
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.js8mns
title: Occurrence Download

description: A dataset containing 1945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chromolaena laevigata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1945 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009164-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4b2ar
title: Occurrence Download

description: A dataset containing 686 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((34.87176 -1.45282,35.43903 -1.78682,35.52758 -1.65395,35.39214 -1.52028,35.331 -1.45086,35.25328 -1.43715,35.23956 -1.36403,35.17099 -1.35946,35.21797 -1.2743,35.06847 -1.15799,35.06584 -1.20406,35.01098 -1.2132,34.99727 -1.28633,34.87176 -1.45282))",
 "OccurrenceStatus is Present",
 "TaxonKey is Connochaetes taurinus",
 "Year is greater than or equal to 2010"
 ]
}

 The dataset includes 686 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009165-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eytw79
title: Occurrence Download

description: A dataset containing 120683 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias",
 "HasCoordinate is true"
 ]
}

 The dataset includes 120683 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009142-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn7wqb
title: Occurrence Download

description: A dataset containing 233 records in GBIF matching the query:
SELECT
 '279' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 20.3845909579754
 AND decimalLatitude &lt;= 24.552553756517728
 AND decimalLongitude &gt;= -5.290045945230182
 AND decimalLongitude &lt;= 0.0
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 233 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009155-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hztc5b
title: Occurrence Download

description: A dataset containing 507071 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megaptera novaeangliae"
 ]
}

 The dataset includes 507071 records from 647 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009130-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14675795
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.18419/darus-5050
title: Replication Data for: Manipulation of Deformable Linear Objects Using Model Predictive Path Integral Control with Bidirectional Long Short Term Memory Learning

description: This dataset contains all trainingsdata and model weights which are used within the paper "Manipulation of Deformable Linear Objects Using Model Predictive Path Integral Control with Bidirectional Long Short Term Memory Learning".
&lt;br&gt;&lt;br&gt;
The manipulation of Deformable Linear Objects (DLOs) such as cables poses a significant challenge for automation due to their infinite degrees of freedom and non-linear dynamics. In this paper we present a machine learning based optimal control approach for the manipulation of DLOs. This approach is divided into two main components: modeling and control. For modeling the dynamics of the DLO, we propose a learning based approach using a bidirectional Long Short-Term Memory (biLSTM) network. The biLSTM network is trained on synthetic data generated by the MuJoCo physics engine. For manipulating the DLO, a model predictive control strategy that employs Model Predictive Path Integral (MPPI) control is selected. The proposed approach is evaluated through simulation and experiments. The results demonstrate the effectiveness of the proposed method in achieving accurate and efficient manipulation of DLOs.
&lt;br&gt;&lt;br&gt;
The dataset contains the following files:
&lt;ul&gt;
 &lt;li&gt; model weights
 &lt;ul&gt;
 &lt;li&gt; biLSTM_bs128_hs256_lr00001_epochs50_10k.pth
 &lt;li&gt; biLSTM_bs128_hs256_lr00001_epochs50_20k.pth
 &lt;li&gt; biLSTM_bs128_hs256_lr00001_epochs50_30k.pth
 &lt;/ul&gt;
 &lt;li&gt; rollout dataset (rollout.npz)
 &lt;li&gt; trainingdata
 &lt;ul&gt;
 &lt;li&gt; dataset_10k.npz
 &lt;li&gt; dataset_20k.npz
 &lt;li&gt; dataset_30k.npz
 &lt;/ul&gt;
 &lt;li&gt; python file for extracting data from .npz files (getDataset.py)
&lt;/ul&gt;
description: Python, 3.12.3
DOI: 10.15468/dl.9yh86q
title: Occurrence Download

description: A dataset containing 13513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceriops tagal",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "not" : {
 "HasGeospatialIssue" : [
 "is true"
 ]
 }
 }
 ]
}

 The dataset includes 13513 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001860-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6071/m3295p
title: 2009 modeled electricity prices from HiGRID for the California grid

description: This dataset was developed to be used in
 the CenSierraPywr model, created for the
 project "Optimizing Hydropower Operations While Sustaining Ecosystem
 Functions in a Changing Climate", for the California Energy
 Commission. The model that includes hydroeconomic optimization
 for hydropower production in the Stanislaus and Upper San Joaquin River
 basins in the Central Sierra Nevada, California. The two basins have high
 elevation reservoirs that are typically operated to maximize revenue from
 hydropower production. Therefore, to better represent real-world
 operations, the hydroeconomic optimization component incorporates
 wholesale electricity prices from the day-ahead market. Wholesale hourly
 electricity prices in the day ahead market drive much of the
 decision-making process in releasing water from reservoirs for hydropower
 production. These are hourly energy prices used to develop piecewise
 linear price curves that are used by the CenSierraPywr routine.
description: Electricity prices were derived from
 the energy pricing prediction output produced by an independent energy
 model (Holistic Grid Resource Integration and Deployment - HiGRID),
 developed by Tarroja et al. (2016; 2019). HiGRID is an hourly-resolved
 electric resource dispatch model that determines the response of electric
 grid resources to satisfy the temporal electric load demand profile and
 ancillary service requirements while maximizing the uptake of renewable
 and zero-carbon resources over an entire year (Tarroja and Hittinger,
 2021). Tarroja, Brian, Amir AghaKouchak, and Scott Samuelsen. 2016. “Quantifying Climate Change Impacts on Hydropower Generation and Implications on Electric Grid Greenhouse Gas Emissions and Operation.” <em>Energy</em> 111. Elsevier Ltd: 295–305. doi:10.1016/j.energy.2016.05.131. Tarroja, Brian, Kate Forrest, Felicia Chiang, Amir AghaKouchak, and Scott Samuelsen. 2019. “Implications of Hydropower Variability from Climate Change for a Future, Highly-Renewable Electric Grid in California.” <em>Applied Energy</em> 237 (December 2018). Elsevier: 353–66. doi:10.1016/j.apenergy.2018.12.079. Tarroja, B., & Hittinger, E. 2021. The value of consumer acceptance of controlled electric vehicle charging in a decarbonizing grid: The case of California. <em>Energy</em>, <em>229</em>, 120691. doi:10.1016/j.energy.2021.120691.
DOI: 10.5061/dryad.wstqjq2nk
title: Mitochondria as environments for the nuclear genome in Drosophila: Mitonuclear GxGxE

description: Mitochondria evolved from a union of microbial cells belonging to distinct
 lineages that were likely anaerobic. The evolution of eukaryotes required
 a massive reorganization of the two genomes and eventual adaptation to
 aerobic environments. The nutrients and oxygen that sustain eukaryotic
 metabolism today are processed in mitochondria through coordinated
 expression of 37 mitochondrial genes and over 1000 nuclear genes. This
 puts mitochondria at the nexus of gene-by-gene (GxG) and
 gene-by-environment (GxE) interactions that sustain life. Here we use a
 Drosophila model of mitonuclear genetic interactions to explore the notion
 that mitochondria are environments for the nuclear genome, and vice versa.
 We construct factorial combinations of mtDNA and nuclear chromosomes to
 test for epistatic interactions (GxG), and expose these mitonuclear
 genotypes to altered dietary environments to examine GxE interactions. We
 use development time and genome wide RNAseq analyses to assess the
 relative contributions of mtDNA, nuclear chromosomes, and environmental
 effects on these traits (mitonuclear GxGxE). We show that the nuclear
 transcriptional response to alternative mitochondrial ‘environments’ (GXG)
 has significant overlap with the transcriptional response of mitonuclear
 genotypes to altered dietary environments. These analyses point to
 specific transcription factors (e.g., giant) that mediated these
 interactions, and identified co-expressed modules of genes that may
 account for the overlap in differentially expressed genes. Roughly 20% of
 the transcriptome includes GxG genes that are concordant with GxE genes,
 suggesting that mitonuclear interactions are part of an organism’s
 environment.
description: Drosophila genotypes were exposed to alternative environments,
 their RNA was extracted and sequenced and analyses of these data were used
 to infer the effect of genotype and environment on gene expression
 profiles.
description: Supplementary files with output from these analyses.
DOI: 10.5061/dryad.xd2547dhx
title: Data from: Dynamics in brain activation and behaviour in acute and repeated social defensive behaviour

description: In nature, confrontations between conspecifics are recurrent and related,
 in general, due to the lack of resources such as food and territory.
 Adequate defences against a conspecific aggressor are essential for the
 individual’s survival and the group integrity. However, repeated social
 defeat is a significant stressor promoting several behavioural changes
 including social defence per se. What would be the neural basis of these
 behavioural changes? To build new hypotheses about this, we here
 investigate the effects of repeated social stress on the neural circuitry
 underlying motivated social defence behaviour in male mice. We observed
 that animals re-exposed to the aggressor three times spent more time in
 passive defence during the last exposure than in the first one. These
 animals also show less activation of the amygdalar and hypothalamic nuclei
 related to the processing of conspecific cues. In turn, we found no
 changes in the activation of the hypothalamic dorsal pre-mammillary
 nucleus (PMD) that is essential for passive defence. Therefore, our data
 suggest that the balance between the activity of circuits related to
 conspecific processing and the PMD determines the pattern of social
 defence behaviour. Changes in this balance may be the basis of the
 adaptations in social defence after repeated social defeat.
description: Behavioural and neural activation data from each male mouse used
 during the experiments: "Effects of reexposure to the
 resident-intruder paradigm in social defence" and "Comparison of
 neural activity after social defeat and restraint stress".
 <strong>Behaviour Analysis - Intruder - Experiment
 01: </strong>Behavioural data from intruder animals during the
 resident-intruder paradigm of experiment 01 (analysis of the effects of
 re-exposure to the intruder-resident paradigm).
 <strong>Behaviour Analysis - Resident - Experiment
 01:</strong> Behavioural data from resident animals during the
 resident-intruder paradigm of experiment 01 (analysis of the effects of
 re-exposure to the intruder-resident paradigm).
 <strong>Neural Activation - Experiment
 01: </strong>Fos density from different brain regions of intruder
 male mice - experiment 01 (analysis of the effects of re-exposure to the
 resident intruder paradigm). <strong>Neural
 Activation - Experiment 01: </strong>Fos density from different
 brain regions of male mice - experiment 02 (comparing the activation
 pattern under social and restraint stress).
 <strong>Tracking Analysis - Intruder - Experiment
 01: </strong>Tracking analyzes of intruder animals during the
 paradigm - experiment 01 (analysis of the effects of re-exposure to the
 resident intruder paradigm). <strong>Tracking
 Analysis - Resident - Experiment 01: </strong>Tracking analyzes of
 resident animals during the paradigm - experiment 01 (analysis of the
 effects of re-exposure to the resident intruder paradigm).
DOI: 10.5061/dryad.ngf1vhhvp
title: Behavioral responses in an object segmentation task and neural responses during passive viewing

description: The rodent visual system has attracted great interest in recent years due
 to its experimental tractability, but the fundamental mechanisms used by
 the mouse to represent the visual world remain unclear. In the primate,
 researchers have argued from both behavioral and neural evidence that a
 key step in visual representation is “figure-ground segmentation,” the
 delineation of figures as distinct from backgrounds [1–4]. To determine if
 mice also show behavioral and neural signatures of figure-ground
 segmentation, we trained mice on a figure-ground segmentation task where
 figures were defined by gratings and naturalistic textures moving
 counterphase to the background. Unlike primates, mice were severely
 limited in their ability to segment figure from ground using the opponent
 motion cue, with segmentation behavior strongly dependent on the specific
 carrier pattern. Remarkably, when mice were forced to localize
 naturalistic patterns defined by opponent motion, they adopted a strategy
 of brute force memorization of texture patterns. In contrast, primates,
 including humans, macaques, and mouse lemurs, could readily segment
 figures independent of carrier pattern using the opponent motion cue.
 Consistent with mouse behavior, neural responses to the same stimuli
 recorded in mouse visual areas V1, RL, and LM also did not support
 texture-invariant segmentation of figures using opponent motion. Modeling
 revealed that the texture dependence of both the mouse’s behavior and
 neural responses could be explained by a feedforward neural network
 lacking explicit segmentation capabilities. These findings reveal a
 fundamental limitation in the ability of mice to segment visual objects
 compared to primates.
description: Datasets were collected per methods
 in https://www.biorxiv.org/content/10.1101/2021.07.04.451059v1. 
description: Instructions for loading data are included in README.MD