cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13655276.v5
title: Materials informatics platform with three dimensional structures, workflow and thermoelectric applications

description: We present a large dataset of 3D materials. with more than 30,000 entries in the database, which contain the relaxed crystal structures, density of states, and band structures. Calculation of the equations of state and sound velocities is performed for over 12,000 entries. The electrical transport properties for approximately 4,400 entries are also calculated.
DOI: 10.6084/m9.figshare.13655276
title: Materials informatics platform with three dimensional structures (MIP-3d)

description: We present a large dataset of 3D materials. with more than 30,000 entries in the database, which contain the relaxed crystal structures, density of states, and band structures. Calculation of the equations of state and sound velocities is performed for over 12,000 entries. The electrical transport properties for approximately 4,400 entries are also calculated.
DOI: 10.6084/m9.figshare.13655276.v6
title: Materials informatics platform with three dimensional structures, workflow and thermoelectric applications

description: We present a large dataset of 3D materials. with more than 30,000 entries in the database, which contain the relaxed crystal structures, density of states, and band structures. Calculation of the equations of state and sound velocities is performed for over 12,000 entries. The electrical transport properties for approximately 4,400 entries are also calculated.
DOI: 10.6084/m9.figshare.15081264.v1
title: Per-read scores from different nanopore methylation tools in controlled mixture dataset 1

description: It contains per-read scores in each subset (0%, 10%, ..., 90%, 100% methylated reads) of the mixture dataset 1. It includes the following fields: Name of the subset, read ID, ending position, strand, ground truth of the read (yes-methylated, no-unmethylated), prediction made by the tool (yes-methylated, no-unmethylated), per-read score.<br>
DOI: 10.6084/m9.figshare.15081264
title: Per-read scores from different nanopore methylation tools in controlled mixture dataset 1

description: It contains per-read scores in each subset (0%, 10%, ..., 90%, 100% methylated reads) of the mixture dataset 1. It includes the following fields: Name of the subset, read ID, ending position, strand, ground truth of the read (yes-methylated, no-unmethylated), prediction made by the tool (yes-methylated, no-unmethylated), per-read score.<br>
DOI: 10.6084/m9.figshare.15081471.v1
title: Supplementary manuscript.docx

description: Supplementary manuscript
DOI: 10.5281/zenodo.5147890
title: TCGA-HNSC NIFTI Test Data

description: This data is part of the TCGA-HNSC dataset provided by The Cancer Imaging Archive (TCIA) and is<br> released under the Creative Commons Attribution 3.0 Unported License. Citations & Data Usage Policy <br> Users of this data must abide by the TCIA Data Usage Policy and the Creative Commons Attribution <br> 3.0 Unported License under which it has been published. Attribution should include references to <br> the following citations: TCGA Attribution<br> "The results &lt;published or shown&gt; here are in whole or part based upon data generated by the TCGA <br> Research Network: http://cancergenome.nih.gov/." Data Citation<br> Zuley, M. L., Jarosz, R., Kirk, S., Lee, Y., Colen, R., Garcia, K., … Aredes, N. D. (2016). <br> Radiology Data from The Cancer Genome Atlas Head-Neck Squamous Cell Carcinoma [TCGA-HNSC] <br> collection. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2016.LXKQ47MS TCIA Citation<br> Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, <br> Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a <br> Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, <br> pp 1045-1057.
DOI: 10.5281/zenodo.5147889
title: TCGA-HNSC NIFTI Test Data

description: This data is part of the TCGA-HNSC dataset provided by The Cancer Imaging Archive (TCIA) and is<br> released under the Creative Commons Attribution 3.0 Unported License. Citations & Data Usage Policy <br> Users of this data must abide by the TCIA Data Usage Policy and the Creative Commons Attribution <br> 3.0 Unported License under which it has been published. Attribution should include references to <br> the following citations: TCGA Attribution<br> "The results &lt;published or shown&gt; here are in whole or part based upon data generated by the TCGA <br> Research Network: http://cancergenome.nih.gov/." Data Citation<br> Zuley, M. L., Jarosz, R., Kirk, S., Lee, Y., Colen, R., Garcia, K., … Aredes, N. D. (2016). <br> Radiology Data from The Cancer Genome Atlas Head-Neck Squamous Cell Carcinoma [TCGA-HNSC] <br> collection. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2016.LXKQ47MS TCIA Citation<br> Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, <br> Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a <br> Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, <br> pp 1045-1057.
DOI: 10.5281/zenodo.5142178
title: Supplementary material for "AR-assisted timber drilling with smart retrofitted tools"

description: The dataset contains point clouds from 3D scans, reconstructed 3D data, and statistical data analysis, which are intended as complementary material for the publication "AR-assisted timber drilling with smart retrofitted tools".
DOI: 10.5281/zenodo.5141888
title: Supplementary material for "AR-assisted timber drilling with smart retrofitted tools"

description: The dataset contains point clouds from 3D scans, reconstructed 3D data, and statistical data analysis, which are intended as complementary material for the publication "AR-assisted timber drilling with smart retrofitted tools".
DOI: 10.5281/zenodo.5147892
title: Clinical Course of COVID-19 Infection in Patients Urgently Operated of Cardiac Surgical Procedures

description: Dataset from the article Garatti A, Castelvecchio S, Daprati A, Molfetta R, Volpe M, De Vincentiis C, Parolari A, Menicanti L. Clinical Course of COVID-19 Infection in Patients Urgently Operated of Cardiac Surgical Procedures. Ann Surg. 2020 Oct;272(4):e275-e279. doi: 10.1097/SLA.0000000000004393. PMID: 32932327. Abstract <strong>Objective: </strong>The aim of this study was to describe the clinical course of a consecutive series of patients operated of urgent cardiac surgery during COVID-19 outbreak. <strong>Background: </strong>In Italy, COVID outbreak has mostly occurred in the metropolitan area of Milan, and in the surrounding region of Lombardy, and previously "conventional" hospitals were converted into COVID spokes to increase ICU beds availability, and to allow only urgent CS procedures. <strong>Methods: </strong>Among urgent CS patients (left main stenosis with unstable angina, acute endocarditis, valvular regurgitation with impending heart failure), 10 patients (mean age = 57 ± 9 years), despite a negative admission triage, developed COVID-pneumonia postoperatively, at a median of 7 days after CS. <strong>Results: </strong>Patients showed typical lymphopenia, higher prothrombotic profile, and higher markers of inflammation (ferritin and interleukin-6 values). At the zenith of pulmonary distress, patients presented with severe hypoxia (median PaO2/FIO2 ratio = 116), requiring advanced noninvasive ventilation (Venturi mask and continuous positive airway pressure) in the majority of cases. All patients were treated with hydroxychloroquine, azithromycin, and low-molecular-weight heparin at anticoagulant dose. Overall in-hospital mortality was 10% (1/10), peaking 25% in patients who developed COVID pneumonia immediately after CS. The remaining patients, with late infection, were all discharged home without oxygen support, at a median of 25 days after symptom onset. <strong>Conclusions: </strong>As postoperative mortality in case of COVID pneumonia is not negligible, meticulous rules (precise triage, safe hospital path, high level of protection for health-care teams, prompt diagnosis of suspicious symptoms) should be strictly followed in patients undergoing CS during COVID pandemic. The role of therapies alternative to CS should be further assessed.
DOI: 10.5281/zenodo.5147891
title: Clinical Course of COVID-19 Infection in Patients Urgently Operated of Cardiac Surgical Procedures

description: Dataset from the article Garatti A, Castelvecchio S, Daprati A, Molfetta R, Volpe M, De Vincentiis C, Parolari A, Menicanti L. Clinical Course of COVID-19 Infection in Patients Urgently Operated of Cardiac Surgical Procedures. Ann Surg. 2020 Oct;272(4):e275-e279. doi: 10.1097/SLA.0000000000004393. PMID: 32932327. Abstract <strong>Objective: </strong>The aim of this study was to describe the clinical course of a consecutive series of patients operated of urgent cardiac surgery during COVID-19 outbreak. <strong>Background: </strong>In Italy, COVID outbreak has mostly occurred in the metropolitan area of Milan, and in the surrounding region of Lombardy, and previously "conventional" hospitals were converted into COVID spokes to increase ICU beds availability, and to allow only urgent CS procedures. <strong>Methods: </strong>Among urgent CS patients (left main stenosis with unstable angina, acute endocarditis, valvular regurgitation with impending heart failure), 10 patients (mean age = 57 ± 9 years), despite a negative admission triage, developed COVID-pneumonia postoperatively, at a median of 7 days after CS. <strong>Results: </strong>Patients showed typical lymphopenia, higher prothrombotic profile, and higher markers of inflammation (ferritin and interleukin-6 values). At the zenith of pulmonary distress, patients presented with severe hypoxia (median PaO2/FIO2 ratio = 116), requiring advanced noninvasive ventilation (Venturi mask and continuous positive airway pressure) in the majority of cases. All patients were treated with hydroxychloroquine, azithromycin, and low-molecular-weight heparin at anticoagulant dose. Overall in-hospital mortality was 10% (1/10), peaking 25% in patients who developed COVID pneumonia immediately after CS. The remaining patients, with late infection, were all discharged home without oxygen support, at a median of 25 days after symptom onset. <strong>Conclusions: </strong>As postoperative mortality in case of COVID pneumonia is not negligible, meticulous rules (precise triage, safe hospital path, high level of protection for health-care teams, prompt diagnosis of suspicious symptoms) should be strictly followed in patients undergoing CS during COVID pandemic. The role of therapies alternative to CS should be further assessed.
DOI: 10.5281/zenodo.5127781
title: CryoBiome-Data

description: Data needed to reproduce the Cryosphere MicroBiome (CryoBiome) study.
DOI: 10.34740/kaggle/dsv/2479087
title: Contrastive Language Image Pretraining by openai
DOI: 10.5281/zenodo.5146091
title: Experimental data for latent thermal storage cooling

description: Datasets contain experimental data for a thermal storage tank. In the datasets provided two experiments are carried out - one where the tank is filled only with water and the second where part of the volume in the top portion of the tank is replaced by containers containing phase change materials. In both cases, the system is firstly heated up to 65 °C. After water and PCM has reached that temperature, the system is being cooled by a direct flow of cold water. Temperature measurements are logged on the side of the tank describing different levels within tank. For the measurement of PCM, temperature sensor is placed inside the PCM container. Data can be used to validate mathematical models of the latent thermal storage systems. More detailed information in added Description.pdf file.
DOI: 10.5281/zenodo.5146090
title: Experimental data for latent thermal storage cooling

description: Datasets contain experimental data for a thermal storage tank. In the datasets provided two experiments are carried out - one where the tank is filled only with water and the second where part of the volume in the top portion of the tank is replaced by containers containing phase change materials. In both cases, the system is firstly heated up to 65 °C. After water and PCM has reached that temperature, the system is being cooled by a direct flow of cold water. Temperature measurements are logged on the side of the tank describing different levels within tank. For the measurement of PCM, temperature sensor is placed inside the PCM container. Data can be used to validate mathematical models of the latent thermal storage systems. More detailed information in added Description.pdf file.
DOI: 10.5281/zenodo.5147905
title: Rare Disease: Cardiac Risk Assessment With MRI in Patients With Myotonic Dystrophy Type 1

description: Dataset from the article Alì M, Monti CB, Melazzini L, Cardani R, Fossati B, Cavalli M, Chow K, Secchi F, Meola G, Sardanelli F. Rare Disease: Cardiac Risk Assessment With MRI in Patients With Myotonic Dystrophy Type 1. Front Neurol. 2020 Mar 19;11:192. doi: 10.3389/fneur.2020.00192. PMID: 32265828; PMCID: PMC7098463. Abstract <strong>Introduction:</strong> To evaluate myocardial strain and extracellular volume in myotonic dystrophy type 1 (DM1) patients as potential imaging biomarkers of subclinical cardiac pathology. <strong>Materials and methods:</strong> We retrospectively analyzed 9 DM1 patients without apparent cardiac disease who had undergone cardiac magnetic resonance at our center. Patients were age- and sex-matched with healthy controls. The Mann-Whitney U test was used to compare cardiac strain between the two groups. The <em>t</em>-test was used to compare the extracellular volume obtained in DM1 patients with that in healthy subject. Spearman's ρ was used for studying the associations among imaging parameters. <strong>Results:</strong> Global cardiac strain (median -19.1%; IQR -20.5%, -16.5%) in DM1 patients was lower (<em>p</em> = 0.011) than that in controls (median-21.7%; IQR-22.7%,-21.3%). Global extracellular volume in DM1 patients (median 32.3%; IQR 29.3%,36.8%) was significantly (<em>p</em> = 0.008) higher than that reported in literature in healthy subjects (median 25.6%; IQR 19.9%,31.9%). Global cardiac strain showed a strong, positive correlation with septal strain (ρ = 0.767, <em>p</em> = 0.016) and with both global (ρ = 0.733 <em>p</em> = 0.025) and septal extracellular volume (ρ = 0.767, <em>p</em> = 0.016). <strong>Discussion:</strong> The increase in cardiac extracellular volume and decrease in strain are signs of early cardiac pathology in DM1. Physicians dealing with DM1 may take into consideration cardiac magnetic resonance as a screening tool to identify early cardiac involvement in this condition.
DOI: 10.5281/zenodo.5147904
title: Rare Disease: Cardiac Risk Assessment With MRI in Patients With Myotonic Dystrophy Type 1

description: Dataset from the article Alì M, Monti CB, Melazzini L, Cardani R, Fossati B, Cavalli M, Chow K, Secchi F, Meola G, Sardanelli F. Rare Disease: Cardiac Risk Assessment With MRI in Patients With Myotonic Dystrophy Type 1. Front Neurol. 2020 Mar 19;11:192. doi: 10.3389/fneur.2020.00192. PMID: 32265828; PMCID: PMC7098463. Abstract <strong>Introduction:</strong> To evaluate myocardial strain and extracellular volume in myotonic dystrophy type 1 (DM1) patients as potential imaging biomarkers of subclinical cardiac pathology. <strong>Materials and methods:</strong> We retrospectively analyzed 9 DM1 patients without apparent cardiac disease who had undergone cardiac magnetic resonance at our center. Patients were age- and sex-matched with healthy controls. The Mann-Whitney U test was used to compare cardiac strain between the two groups. The <em>t</em>-test was used to compare the extracellular volume obtained in DM1 patients with that in healthy subject. Spearman's ρ was used for studying the associations among imaging parameters. <strong>Results:</strong> Global cardiac strain (median -19.1%; IQR -20.5%, -16.5%) in DM1 patients was lower (<em>p</em> = 0.011) than that in controls (median-21.7%; IQR-22.7%,-21.3%). Global extracellular volume in DM1 patients (median 32.3%; IQR 29.3%,36.8%) was significantly (<em>p</em> = 0.008) higher than that reported in literature in healthy subjects (median 25.6%; IQR 19.9%,31.9%). Global cardiac strain showed a strong, positive correlation with septal strain (ρ = 0.767, <em>p</em> = 0.016) and with both global (ρ = 0.733 <em>p</em> = 0.025) and septal extracellular volume (ρ = 0.767, <em>p</em> = 0.016). <strong>Discussion:</strong> The increase in cardiac extracellular volume and decrease in strain are signs of early cardiac pathology in DM1. Physicians dealing with DM1 may take into consideration cardiac magnetic resonance as a screening tool to identify early cardiac involvement in this condition.
DOI: 10.5281/zenodo.5147922
title: Diagnosis of left atrial appendage thrombus in patients with atrial fibrillation: delayed contrast-enhanced cardiac CT

description: Dataset from the article Spagnolo P, Giglio M, Di Marco D, Cannaò PM, Agricola E, Della Bella PE, Monti CB, Sardanelli F. Diagnosis of left atrial appendage thrombus in patients with atrial fibrillation: delayed contrast-enhanced cardiac CT. Eur Radiol. 2021 Mar;31(3):1236-1244. doi: 10.1007/s00330-020-07172-2. Epub 2020 Sep 4. PMID: 32886202; PMCID: PMC7880950. <strong>Abstract</strong> <strong>Objectives: </strong>The current reference standard for diagnosing LAA thrombi is transesophageal echocardiography (TEE), a semi-invasive technique. We aimed to devise an optimal protocol for cardiac computed tomography (CCT) in diagnosing left atrial appendage (LAA) thrombus in patients with atrial fibrillation (AF), using TEE as reference standard. <strong>Methods: </strong>Two hundred sixty consecutive patients referred for radiofrequency ablation for AF were prospectively enrolled. All patients underwent CCT and TEE within 2 hours. The CCT protocol included one standard angiographic phase and three delayed acquisitions at 1-, 3-, and 6-min after contrast injection. Thrombi were defined as persisting defects at 6-min delayed acquisition. <strong>Results: </strong>TEE demonstrated spontaneous contrast in 52 (20%) patients and thrombus in 10 (4%). In 63 patients (24%), CCT demonstrated LAA early filling defects at angiographic phase. Among them, 15 (6%) had a persistent defect at 1-min, 12 (5%) at 3-min, and 10 (4%) at 6-min. All 10 thrombi diagnosed on TEE were correctly identified by delayed CCT, without any false positives. For all phases, sensitivity and negative predictive were 100%. Specificity increased from 79% for the angiographic phase to 100% at 6-min. Positive predictive value increased from 16% to 100%. Estimated radiation exposure was 2.08 ± 0.76 mSv (mean ± standard deviation) for the angiographic phase and 0.45 ± 0.23 mSv for each delayed phase. <strong>Conclusion: </strong>A CCT protocol adding a 6-min delayed phase to the angiographic phase can be considered optimized for the diagnosis of LAA thrombi, with a low radiation dose.
DOI: 10.5281/zenodo.5147921
title: Diagnosis of left atrial appendage thrombus in patients with atrial fibrillation: delayed contrast-enhanced cardiac CT

description: Dataset from the article Spagnolo P, Giglio M, Di Marco D, Cannaò PM, Agricola E, Della Bella PE, Monti CB, Sardanelli F. Diagnosis of left atrial appendage thrombus in patients with atrial fibrillation: delayed contrast-enhanced cardiac CT. Eur Radiol. 2021 Mar;31(3):1236-1244. doi: 10.1007/s00330-020-07172-2. Epub 2020 Sep 4. PMID: 32886202; PMCID: PMC7880950. <strong>Abstract</strong> <strong>Objectives: </strong>The current reference standard for diagnosing LAA thrombi is transesophageal echocardiography (TEE), a semi-invasive technique. We aimed to devise an optimal protocol for cardiac computed tomography (CCT) in diagnosing left atrial appendage (LAA) thrombus in patients with atrial fibrillation (AF), using TEE as reference standard. <strong>Methods: </strong>Two hundred sixty consecutive patients referred for radiofrequency ablation for AF were prospectively enrolled. All patients underwent CCT and TEE within 2 hours. The CCT protocol included one standard angiographic phase and three delayed acquisitions at 1-, 3-, and 6-min after contrast injection. Thrombi were defined as persisting defects at 6-min delayed acquisition. <strong>Results: </strong>TEE demonstrated spontaneous contrast in 52 (20%) patients and thrombus in 10 (4%). In 63 patients (24%), CCT demonstrated LAA early filling defects at angiographic phase. Among them, 15 (6%) had a persistent defect at 1-min, 12 (5%) at 3-min, and 10 (4%) at 6-min. All 10 thrombi diagnosed on TEE were correctly identified by delayed CCT, without any false positives. For all phases, sensitivity and negative predictive were 100%. Specificity increased from 79% for the angiographic phase to 100% at 6-min. Positive predictive value increased from 16% to 100%. Estimated radiation exposure was 2.08 ± 0.76 mSv (mean ± standard deviation) for the angiographic phase and 0.45 ± 0.23 mSv for each delayed phase. <strong>Conclusion: </strong>A CCT protocol adding a 6-min delayed phase to the angiographic phase can be considered optimized for the diagnosis of LAA thrombi, with a low radiation dose.
DOI: 10.6084/m9.figshare.15081504.v1
title: Amazon_NEE_multi_years_1980-2016.nc

description: ORCHIDEE-AP, Amazon NEE, 1deg
DOI: 10.6084/m9.figshare.15081504
title: Amazon_NEE_multi_years_1980-2016.nc

description: ORCHIDEE-AP, Amazon NEE, 1deg
DOI: 10.25345/c5wg25
title: MassIVE MSV000087922 - Proteome dynamics of rice with inoculation of ACC deaminase producing endophytic bacteria
title: The data presented here are related to the proteins detected in rice plants inoculated with ACC deaminase producing Methylobacterium oryzae CBMB20 and imposed with salt stress.
DOI: 10.25919/2exc-dk18
title: Parkes observations for project PX500 semester 2021APRS_18

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.