cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.931zcrjxm
title: Mechanism of Ca2+ in regulating pupation defects of Bombyx mori after exposure to chlorantraniliprole

description: Chlorantraniliprole (CAP) is a novel amide insecticide widely used in
 agriculture. Trace residues of CAP in the environment pose a threat to the
 development and metamorphosis of the silkworm (Bombyx mori). However, the
 mechanisms by which CAP exposure disrupts insect metamorphosis remain
 poorly understood. This study investigated the levels of intracellular
 Ca²⁺ and 20-hydroxyecdysone (20E) following exposure to low concentrations
 of CAP. The results revealed that CAP exposure both directly caused
 increased Ca²⁺ levels and indirectly promoted an increase in Ca²⁺ levels
 by inducing an elevation in 20E levels. Furthermore, increased Ca2+ levels
 inhibited the expression of Ftz-f1, leading to abnormal pupation. Our
 study reveals for the first time the sublethal effects of CAP mediated by
 the Ca2+-Ftz-f1 axis. The findings herein provide a reference for
 evaluating the safety of environmental residues of amide pesticides on
 insects.
description: # Mechanism of Ca2+ in regulating pupation defects of *Bombyx mori* after
 exposure to chlorantraniliprole Dataset DOI:
 [10.5061/dryad.931zcrjxm](10.5061/dryad.931zcrjxm) ## Description of the
 data and file structure ### Files #### File: Ftz-f1\_(merge).tif
 **Description:** This is a composite image of the Ftz-f1 protein band and
 the marker lane from the Western blot experiment. #### File: Ftz-f1.tif
 **Description:** This file shows the Western blot results for FTZ-F1. ####
 File: tubulin\_(merge).tif **Description:** This is a composite image of
 the tubulin protein band and the marker lane from the Western blot
 experiment. #### File: tubulin.tif **Description:** This file shows the
 Western blot results for tubulin. #### File: tubulin.tif
 **Description:** This file shows the Western blot results for tubulin. ##
 Version change log 22 May 2025: new file added #### File: Figure\_4b.png
 **Description:** Analysis of the Ftz-f1 protein level by performing
 western blot analysis.
DOI: 10.5061/dryad.h70rxwdwg
title: Data from: The earliest known fungal-induced biomineralization in fossil bones, and its role in the marine ecosystem

description: Formation of microtubes, defined as small internal borings, in fossil and
 modern bone is a well-attested phenomenon. However, determining whether
 microtubes were created by microbial activity or abiotic processes is
 challenging, particularly in fossils. Here, we report abundant microtubes
 in compact bone from numerous specimens of the marine reptile
 Keichousaurus from the Middle Triassic of southwestern China. Light and
 scanning electron microscope imaging of osteological thin sections, and
 CT-based 3D reconstruction of the microtubes, reveal geometric features
 typical of fungal hyphae, such as bifurcation and tight helical coiling.
 Some microtubes contain what may be the first known fossilized fungal
 vacuoles. The microtubes are thus likely to be of fungal origin, produced
 by saprobic marine fungi during decomposition. Furthermore, fluorine is
 abundant in the compact bone, and even more prevalent in the infillings
 that occur in many microtubes. The fungi evidently released calcium ions
 and took up fluorine from the reptiles’ bodies, and promoted the formation
 of fluorite in the microtubes. The infillings represent the earliest known
 instance of fungal-induced biomineralization within fossil bone,
 demonstrating that some Middle Triassic fungi were capable of impacting
 global biogeochemical cycling by taking up substantial amounts of
 fluorine.
description: # CT scanning of the left partial femur of *Keichousaurus* for microtubes
 reconstruction Dataset DOI:
 [10.5061/dryad.h70rxwdwg](10.5061/dryad.h70rxwdwg) ## Description of the
 data and file structure A small piece of the left femur of CUG VH232 was
 scanned using ZEISS Xradia 620 Versa at Nanjing Institute of Geology and
 Palaeontology, Chinese Academy of Sciences. The bone was broken at the
 middle region, and the resulting sample was scanned over the thickness of
 the compact bone only, from the periphery to the inner cortex, in order to
 maximize resolution. For the scan, the acceleration voltage was set to 100
 KV and current to 140 μA, and the voxel size to 0.8106 μm^3. The exposure
 time for each projection was 2 s, and the number of TIFF images obtained
 was 3201. ### Files and variables #### File:
 Raw\_Tiffs-VH232\_LFP\_4X-LE4-90kv-12w-2s-0.8104-3201-DR.zip
 **Description:** CT Scanning images (TIFF format) of the left partial
 femur of *Keichousaurus* from the Middle Triassic of Southwest China ##
 Code/software Our data can be viewed by the software Spiers 3.0.1.
DOI: 10.15468/dl.v6xcsw
title: Occurrence Download

description: A dataset containing 1322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Astyanax altiparanae"
 ]
}

 The dataset includes 1322 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004366-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8fjxq
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Callirhoe scabriuscula"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004365-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.ht97t05x
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1017 records)
DOI: 10.6084/m9.figshare.30483515.v25
title: Forvard step of Logic

description: Logic and more
DOI: 10.15468/dl.83bjg5
title: Occurrence Download

description: A dataset containing 1988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Meccus pallidipennis"
 ]
}

 The dataset includes 1988 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004367-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.wm37pvmzx
title: The weights of PRS for idiopathic pulmonary arterial hypertension

description: This study aimed to develop a comprehensive prediction model integrating
 polygenic risk scores (PRS) and clinical factors to identify individuals
 at high risk for incident idiopathic pulmonary arterial hypertension
 (IPAH). A PRS was constructed using summary statistics derived
 from the largest genome-wide association study for pulmonary arterial
 hypertension in Europeans and validated in the UK Biobank (732 cases,
 458,258 controls). After excluding individuals with IPAH at baseline,
 316,073 participants (316 incident IPAH patients) were split into training
 and testing sets (7:3). Variable selection was performed using least
 absolute shrinkage and selection operator in the training set, and a
 prediction model for incident IPAH was established using the Cox
 proportional hazards model. The dataset here is the Supplementary
 Data for the manuscript titled "Polygenic risk score and clinical
 factors predict incident idiopathic pulmonary arterial hypertension".
 The dataset contains the weight for each single-nucleotide polymorphism
 used for constructing PRS for IPAH. 
description: # The weights of PRS for idiopathic pulmonary arterial hypertension
 Dataset DOI: [10.5061/dryad.wm37pvmzx](10.5061/dryad.wm37pvmzx) #
 Supplementary Data for PRS Construction (Supplementary_Data.zip) ##
 Description of the data and file structure We constructed a genome-wide
 polygenic risk score (PRS) for idiopathic pulmonary arterial hypertension
 (IPAH) using summary statistics from a published pulmonary arterial
 hypertension (PAH) genome-wide association study (GWAS) (doi:
 10.1016/S2213-2600(18)30409-0). The dataset comprises the variant-specific
 weights required for PRS construction. The file contains the assigned
 weight for every single-nucleotide polymorphism (SNP) included in the IPAH
 PRS model. ##
DOI: 10.15468/dl.z5bwxt
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pomphorhynchus tereticollis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 237 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004368-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d6e897
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cisthene conjuncta"
 ]
}

 The dataset includes 108 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004370-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bznhsw
title: Occurrence Download

description: A dataset containing 278 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Synodontis nigriventris",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 278 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004369-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.69p8cz9ff
title: Subjective executive functioning and skill learning during the COVID-19 pandemic associated with perceived loneliness, depressive symptoms, and well-being

description: The present study investigated whether higher subjective executive
 functioning and learning new skills related to better mental health across
 adulthood during the COVID-19 pandemic. Participants (n = 133) were
 recruited from Southern California, USA across two different timepoints. A
 subset of participants over the age of 58 years old, who previously
 participated in a skill learning intervention (n = 52) that increased
 objective executive functioning, also were included in the present study.
 Worse subjective executive functioning (EF) during the COVID-19 pandemic
 predicted worse mental health across adulthood. In addition, learning new
 skills may have helped adults adapt better to changes during the pandemic
 to increase mental health. These findings highlight the importance of
 cognitive abilities and learning new skills on mental health. 
 Our findings provide a more nuanced view of the benefits and costs of
 adaptation via skill learning on adult mental health during the COVID-19
 pandemic. Learning new skills could be associated with better mental
 health outcomes and we see this during the second timepoint of the
 COVID-19 pandemic. In addition, worse subjective cognitive abilities could
 lead to worse mental health outcomes. Our results suggest that better
 cognitive abilities and learning new skills are important for mental
 health.
description: # Subjective executive functioning and skill learning during the COVID-19
 pandemic associated with perceived loneliness, depressive symptoms, and
 well-being Dataset DOI: [10.5061/dryad.69p8cz9ff](10.5061/dryad.69p8cz9ff)
 ## Description of the data and file structure De-identified data collected
 across timepoints for mental health outcomes, subjective executive
 functioning, and intervention status. Empty cells represent data were not
 available/applicable. ### Files and variables #### File: Data.xlsx * PID:
 **Anonymize**d participant ID - Wave: Wave of data collection (timepoint)
 * INT: Intervention 0 = non intervention, 1= intervention group -
 Age_Range: participant's age at the time of data collection *
 Emotional_closeness Of the people living in your household, how
 emotionally close do you feel to them? - LEARN_BEHAV: How many hours a
 week, on average, do you spend on engaging in new behaviors in general? *
 NEWSKILL_tolerable: ‘How tolerable do you think learning a new skill has
 made the social distancing restrictions? - slide the mark’ - PHQ9_Total:
 PHQ- SUM score * UCLA_Lon_Total: UCLA Perceived Loneliness SUM Score
 (range: 20-140) - PERMA_TOTAL: overall wellbeing score * BRIEF_TOTAL:
 BRIEF-A SUM Score range: 65 (better EF) -455 (worse EF) ## Human subjects
 data All participants have provided informed consent and to ensure the
 confidentiality and privacy of the participants, all data collected have
 been de-identified. This was accomplished by randomly assigning unique
 identification numbers to each data point.
DOI: 10.5061/dryad.vdncjsz6m
title: Natural fallow alleviates carbon and nitrogen limitation of microorganisms and plants in paddy fields

description: Carbon (C), nitrogen (N), and phosphorus (P) serve as critical limiting
 factors for plant-microbe colonization and growth in agroecosystems, while
 simultaneously functioning as key regulatory controls for soil C
 emissions. Here, we investigated plant-microbial nutrient limitation under
 two states of paddy fields (cultivation state and fallow state), assessing
 synchronization patterns through combined analysis of plant resorption
 efficiency and microbial ecoenzyme stoichiometry. We found that there was
 a consistent pattern of N (25.00%) and P (44.44%) limitation between
 plant-microbial communities. Plant-microbial communities were mainly
 N-limited in the rice cultivation stage and P-limited in the fallow stage.
 Nutrient limitation of plant-microbial communities was regulated by soil
 C:N:P stoichiometry: the increase in available soil N:P led to P
 limitation in plant communities, which enhanced the secretion of
 organoheterocyclic compounds and organometallic compounds. This change
 increased the relative abundance of Chloroflexi and Ascomycota, thereby
 exacerbating microbial P limitation. Notably, the direct effect of
 available soil N:P on microbial N:P limitation was as important as the
 indirect effect through plant communities. The increased available soil
 C:N exacerbated microbial C limitation primarily through changing
 microbial composition. Overall, variations in stoichiometry of available
 soil nutrients drove a transition from N to P limitation in
 plant-microbial communities during fallow periods. We highlight that
 fallowing is an important compensatory process to alleviate the C and N
 limitation of plant-microbial communities resulting from long-term
 agricultural monoculture patterns.
description: # Natural fallow alleviates carbon and nitrogen limitation of
 microorganisms and plants in paddy fields Dataset DOI:
 [10.5061/dryad.vdncjsz6m](10.5061/dryad.vdncjsz6m) ## Description of the
 data and file structure Relevant data on microbiological and enzymatic
 activities, etc., of rice soils We have submitted our raw data
 (**Data.csv**). ### **DATE.CSV** units: % * *VL*: Vector length,
 representing the microbial C limit * *VA*: Vector angle, representing the
 N or P limit for microorganisms * *Plant limitation*: N/P of plant leaves,
 representing their N or P limitation * *soil C/N*: Soil C and N ratio *
 *soil C/P*: Soil C and P ratio * *soil N/P*: Soil N and P ratio * *BAC
 PC1* and *BAC PC2*: represent the bacterial community structure (first and
 second axes in PC species), respectively * *FUN PC1* and *FUN PC2*:
 represent the fungal community structure (first and second axes in PC
 species), respectively * *root exudates PC1* and *root exudates PC2*:
 represent the root exudates composition (first and second axes in PC
 species), respectively ## Code/software All the analysis and figures were
 done in R version 4.1.2.
DOI: 10.15468/dl.sbesd2
title: Occurrence Download

description: A dataset containing 282866 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amanita muscaria"
 ]
}

 The dataset includes 282866 records from 541 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004324-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7m0cfxq6z
title: Data from: Influence of floral orientation on feeding behavior in Anna's hummingbirds

description: Hover-feeding by hummingbirds from pendent flowers relative to horizontal
 flowers increases the metabolic cost of flight, but in nature a large
 proportion of hummingbird-pollinated flowers are nonetheless oriented
 near-vertically downward. We used binary-choice tests to assess behavioral
 preference of captive Anna's Hummingbirds for these two particular
 floral orientations. The extent of nectar consumption from artificial
 flowers differed significantly over a 2-hour exposure period, with birds
 showing greater extraction from the horizontal configuration. We also
 found that time spent hovering at the feeder immediately prior to nectar
 extraction did not vary by feeder orientation, whereas feeding duration
 tended to be greater at horizontal feeders. Opportunistic measurements of
 wild hummingbirds were also consistent with a preference for horizontal
 feeders. In aggregate, these observations suggest that the increased
 metabolic cost of hover-feeding from pendent flowers is matched by an
 associated behavioral aversion, at least under the conditions examined
 here. However, pendent hummingbird-specialized flowers are common,
 suggesting that additional behavioral or ecological factors underpin
 evolutionary persistence of this floral presentation.
description: # Influence of floral orientation on feeding behavior in Anna's
 hummingbirds Dataset DOI:
 [10.5061/dryad.7m0cfxq6z](10.5061/dryad.7m0cfxq6z) ## Description of the
 data and file structure **Datasheet 1**. Mass depletion of artificial
 nectar from horizontal and vertical feeders by four hummingbirds.
 Variables: hummingbird identity: ID of the individual hummingbird,
 depletion from horizontal feeder (grams):nectar solution depleted from the
 horizontally oriented feeder, depletion from vertical feeder (grams):
 nectar solution depleted from the vertically oriented feeder **Datasheet
 2**. Hang durations at horizontal and vertical feeders for two different
 hummingbirds. Variables: hummingbird identity: ID of the individual
 hummingbird, feeder orientation: either vertical or horizontal
 orientation, hang duration (seconds): hummingbird hung at the feeder.
 **Datasheet 3**. Feeding durations at horizontal and vertical feeders for
 two different hummingbirds. Variables: hummingbird identity: ID of the
 individual hummingbird, feeder orientation: either vertical or horizontal
 orientation, feeding duration (seconds): time spent on feeding **Datasheet
 4**. Observational feeding durations at horizontal and vertical feeders
 for unidentified hummingbirds in the wild. Variables: feeder orientation:
 either vertical or horizontal orientation, feeding duration (seconds):time
 spent on feeding
DOI: 10.15468/k9r75d
title: A new species of Tyttocharax (Characiformes: Characidae: Stevardiinae) from the Güejar River, Orinoco River Basin, Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Román-Valencia, César, García-Alzate, Carlos A., Ruiz-C., Raquel I., Taphorn B, Donald C. (2012): A new species of Tyttocharax (Characiformes: Characidae: Stevardiinae) from the Güejar River, Orinoco River Basin, Colombia. Neotropical Ichthyology 10 (3): 519-525, DOI: 10.1590/S1679-62252012000300004, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000300004&lng=en&tlng=enA new Tyttocharax species from the Güejar River system, near the Macarena Mountains in Colombia is described. This is the first record for the genus from the Orinoco basin. The combination of the following characters distinguish Tyttocharax metae from its congeners: presence of bony hooks on the pectoral and caudal-fin rays; bony hooks on the anal-fin rays larger than those on the pelvic-fin rays; pectoral-fin rays i, 5-6,i; presence of three unbranched dorsal-fin rays; absence of an adipose fin; four scales rows between the anal-fin origin and the lateral line; and four scale rows between the pelvic-fin and the lateral line. Ecological characteristics of the habitat of the new species are also presented.Una nueva especie de Tyttocharax se describe para la cuenca del río Güejar, Serranía de La Macarena en Colombia. Tyttocharax metae es un nuevo registro del género para la cuenca del río Orinoco. La combinación de los siguientes caracteres distingue a Tyttocharax metae de sus congéneres: presencia de ganchos óseos en los radios de las aletas pectorales y caudal; ganchos óseos en los radios de la aleta anal de mayor tamaño que los de las aletas pélvicas; radios de las aletas pectorales i, 5-6,i; tres radios simples en la aleta dorsal; ausencia de una aleta adiposa; cuatro escamas entre la línea lateral y el origen de la aleta anal, y cuatro escamas entre la línea lateral y las aletas pélvicas. Se incluyen datos ecológicos del hábitat propio del nuevo taxón.
DOI: 10.15468/dl.rsbsx6
title: Occurrence Download

description: A dataset containing 210431 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xanthoria parietina"
 ]
}

 The dataset includes 210431 records from 665 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004325-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16908266
title: IKOA-SVM Identification Data
DOI: 10.5281/zenodo.16908267
title: IKOA-SVM Identification Data
DOI: 10.15468/dl.46rsqc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is ",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024986-250811113504898/datasets/export for details.
DOI: 10.15468/dl.h7t2s4
title: Occurrence Download

description: A dataset containing 5863 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coreopsis grandiflora Hogg ex Sweet"
 ]
}

 The dataset includes 5863 records from 260 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010065-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m64dta
title: Occurrence Download

description: A dataset containing 932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Armadillidiidae",
 "Year 2005-2007",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Observation)"
 ]
}

 The dataset includes 932 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049797-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.