cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2072929.v5
title: Data for paper: Viral coinfection is shaped by host ecology and virus-virus interactions across diverse microbial taxa and environments (in press at Virus Evolution)

description: Infection of more than one virus in a host, coinfection, is common across taxa and environments. Viral coinfection can enable genetic exchange, alter the dynamics of infections, and change the course of viral evolution. Yet, a systematic test of the factors explaining variation in viral coinfection across different taxa and environments awaits completion. Here I employ three microbial data sets of virus-host interactions covering cross-infectivity, culture coinfection, and single-cell coinfection (total: 6,564 microbial hosts, 13,103 viruses) to provide a broad, comprehensive picture of the ecological and biological factors shaping viral coinfection. I found evidence that ecology and virus-virus interactions are recurrent factors shaping coinfection patterns. Host ecology was a consistent and strong predictor of coinfection across all three datasets: cross-infectivity, culture coinfection, and single-cell coinfection. Host phylogeny or taxonomy was a less consistent predictor, being weak or absent in the cross-infectivity and single-cell coinfection models, yet it was the strongest predictor in the culture coinfection model. Virus-virus interactions strongly affected coinfection. In the largest test of superinfection exclusion to date, prophage sequences reduced culture coinfection by other prophages, with a weaker effect on extrachromosomal virus coinfection. At the single-cell level, prophage sequences eliminated coinfection. Virus-virus interactions also <i>increased</i> culture coinfection with ssDNA-dsDNA coinfections &gt;2x more likely than ssDNA-only coinfections. The presence of CRISPR spacers was associated with a ~50% reduction in single-cell coinfection in a marine bacteria, despite the absence of exact spacer matches in any active infection. Collectively, these results suggest the environment bacteria inhabit and the interactions among surrounding viruses are two factors consistently shaping viral coinfection patterns. These findings highlight the role of virus-virus interactions in coinfection with implications for phage therapy, microbiome dynamics, and viral infection treatments.
DOI: 10.6084/m9.figshare.27229635.v1
title: <b>CGMCC3.3655</b><b> </b><b>genomic transcript and protein sequences and functional annotations</b>

description: CGMCC3.3655 Genomic transcript and protein sequences and functional annotations
DOI: 10.3535/lyb-bz6-l08
title: Chalcedony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y9b-82g-kd6
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24036819.v1
title: Data from: Elevational range limits in naturalized <i>Rumex conglomeratus</i> likely formed by climate and lack of local adaptation

description: Data on lab germination and field survival and reproduction of <i>Rumex conglomeratus</i> from both lowland and upland populations in the introduced range in New Zealand. Seeds were collected from natural populations in the middle of the range and at the high elevation range edge and grown in a reciprocal transplant common garden experiment at mid-range, range edge and beyond range sites. We measured germination of seeds from all populations under lab conditions and measured emergence, survival, biomass and reproduction in individual plants from the field experiment.Data include the rate of germination in the lab (Lab Germination.csv) and data from the field experiment (Common Garden Data.csv). Field experiment data include number of emergents, survival of each plant, final dry weight if the plant survived, and whether the plant reproduced during the experiment. Note that the proportion emerged in the field experiment can be calculated by counting the number of individuals per pot in the field data set and dividing by 36, which is the number of seeds originally planted. Metadata, which describes the content of each column in the datasets, can be found in Elevation Range Limits Data Metadata.csv.These data are associated with the following manuscript:Bufford, JL & Hulme, PE. 2023. Elevational range limits in naturalized <i>Rumex conglomeratus</i> likely formed by climate and lack of local adaptation. Perspectives in Plant Ecology, Evolution and Systematics. DOI: 10.1016/j.ppees.2023.125749
DOI: 10.3535/b3t-n8g-8ft
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n9n-hhk-y2x
title: Pyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0xm-rel-gan
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/st4-0kg-z7p
title: Pyrite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/49f-qyw-c8b
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6ne-jnr-hcn
title: Rock Crystal

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n21-qrg-2lj
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/5wybgfm7bj
title: Theoretical estimations of equilibrium and kinetic uranium isotope fractionations-Research data

description: The research data of “Theoretical estimations of equilibrium and kinetic uranium isotope fractionations”, such as vibrational frequencies for the calculation of conventional mass-dependent fractionation factors and |Ψ(0)2| for the calculation of fractionation factors caused by nuclear volume effects of U-bearing species.
DOI: 10.3535/bgf-yr1-bze
title: Rock Crystal

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e86-jnb-fnz
title: Chalcedony

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/7mncdjvwpb
title: Exploring the Hair Growth-Promoting Effects of Periplaneta americana Extract on Alopecia Areata Mice through Alleviating Skin Inflammation and Modulating Skin Microbiota Based on Systems Pharmacology

description: Alopecia areata (AA), an autoimmune hair-loss disease due to follicular inflammatory cell infiltration, lacks an ideal cure. the Periplaneta Americana (PA) extract PA-011, a traditional Chinese medicine with anti-inflammatory, antioxidant, tissue-repair-promoting, and immune-regulating properties, was studied for its AA-treating effects. Guided by network pharmacology, AA model mice were treated with PA-011. Hair growth, skin tissue, inflammatory factors, and Wnt protein levels were examined. Transcriptomics, metabolomics, and 16S rRNA sequencing explored the hair-growth-promoting mechanisms. Network pharmacology showed PA-011 could regulate AA-related targets and pathways. PA-011 intervention promoted hair follicle cell proliferation and hair growth in AA mice, reduced skin TNF-α, IL-23, and VCAM-1 expression. Transcriptomics and WB analysis indicated PA-011 downregulated inflammatory genes, activated Wnt3a, and modulated the TGF-β pathway. Metabolomics found PA-011 regulated metabolic pathways. 16S rRNA analysis showed it reversed AA-induced skin microbiota changes, inhibiting pathogens and promoting probiotics. Multi-omics analysis revealed PA-011 regulated skin microbiota and metabolic balance for hair growth. In conclusion, PA-011 alleviates AA by reducing skin inflammation and modulating skin microbiota, suggesting its potential as an AA therapeutic.
DOI: 10.17632/t5zfkhhg3n
title: data in biref for Linking oceanographic processes to contourite features

description: Bathymetry data i) associated with the seismic profiles within the MS and ii) obtained from the General Bathymetric Chart of the Oceans dataset, as well as the annual mean simulation results are provided here.
The original high-resolution 3D numerical modeling data for the study area are archived at the German Climate Computing Center and available upon request from the contributors.
DOI: 10.3535/3zq-vb3-5zb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6jc-qtl-j2a
title: †Toxochasmops (Schmidtops) maximus Schmidt, 1881

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/sdp-6d7-h62
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12672863.v1
title: Our World in Data COVID-19 Testing Database

description: This new dataset brings together official data on the extent of PCR testing over time for 92 countries. We provide a time series for the daily number of tests performed, or people tested, together with metadata describing data quality and comparability issues needed for the interpretation of the time series. The dataset is updated regularly through a combination of automated scraping and manual collection and verification, and is entirely replicable, with sources provided for each observation. In providing accessible cross-country data on testing output, it aims to facilitate the incorporation of this crucial information into epidemiological studies, as well as track a key component of countries’ responses to COVID-19.
DOI: 10.3535/3ln-1es-sex
title: †Encrinurus punctatus (Wahlenberg, 1821)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m5l-pd1-tv5
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z1m-r5p-zq0
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13440182.v1
title: Figure 1 + S3

description: At the top, the mutation strategy compared to the wild-type allele of the TRIM5 gene. The mutation strategy consists in 8 introduced substitutions, including 2 non-silent substitutions to mutate Arg332 into Gly (blue), 1 non-silent substitution to mutate Arg335 into Gly (blue), a silent mutation to disrupt the PAM sequence (purple), a silent mutation to create a HaeIII restriction site (green) and 3 silent mutations of the sequence targeted by gRNA1 (grey). The HDR-modified region was amplified by PCR and the PCR products were then analyzed by Illumina Miseq sequencing.
DOI: 10.6084/m9.figshare.13681534.v1
title: public_21q1

description: This dataset contains the results of Avana library CRISPR-Cas9 genome-scale knockout (prefixed with Achilles) as well as mutation, copy number and gene expression data (prefixed with CCLE) for cancer cell lines as part of the Broad Institute’s Cancer Dependency Map project. We have repackaged our fileset to include all quarterly-updating datasets produced by DepMap.<br>The Avana CRISPR-Cas9 genome-scale knockout data has expanded to include 808 cell lines, the RNAseq data includes 1376 cell lines, and the copy number data includes 1740 cell lines. Please see the README files for details regarding data processing pipeline procedures updates.<br>As our screening efforts continue, we will be releasing additional cancer dependency data on a quarterly basis for unrestricted use. For the latest datasets available, further analyses, and to subscribe to our mailing list visit https://depmap.org.<br>Descriptions of the experimental methods and the CERES algorithm are published in http://dx.doi.org/10.1038/ng.3984. Some cell lines were process using copy number data based on the Sanger Institute whole exome sequencing data (COSMIC: http://cancer.sanger.ac.uk.cell_lines, EGA accession number: EGAD00001001039) reprocessed using CCLE pipelines. A detailed description of the pipelines and tool versions for CCLE expression can be found here: https://github.com/broadinstitute/gtex-pipeline/blob/v9/TOPMed_RNAseq_pipeline.md.<br><br>
DOI: 10.6084/m9.figshare.c.3685228_d1.v1
title: Additional file 3: of An approach of identifying differential nucleosome regions in multiple samples

description: Data of differential nucleosome regions (DNRs) identified by Dimnp for yeast chromosome 1 in two sets of multiple-cell type comparison. One is for H4WT, H4R3A and H4K20A; the other is H4K5A, H4K20A, H4K91A and H4K16A. (XLS 86Â kb)
DOI: 10.3535/6xb-y2m-zfm
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/84d-vbj-rkj
title: †Dicoelosia King, 1850

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/yknjyk9tfz
title: Supplementary material to paper entitled "Prognosis for people with multiple primary melanomas compared with a single primary melanoma" .

description: Supplementary material
DOI: 10.3535/0hh-7cs-nhl
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dh3-yd2-n2r
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26885629.v1
title: Social anxiety and helping behavior when being envied: The role of fear of positive evaluation

description: Data sharing for manuscript submission.
DOI: 10.6084/m9.figshare.28183889.v1
title: DATA COVID STUDIO

description: Datos brutos del estudio sobre la opinión de la familias en la tele-escuela en el periodo de confinamiento
DOI: 10.3535/6dw-gqk-p84
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cl0-y1k-esz
title: Kodonophyllum sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25927204.v1
title: H11_W

description: Power related data for House 11
DOI: 10.17632/k9vfmdtbxm
title: CGAN Assists the Styles & Features Renovation of Street Facade—A case study of Wuyi area in Fujian, China(Training set for machine learning)

description: This dataset is about the paper "CGAN Assists the Styles & Features Renovation of Street Fa-cade—A case study of Wuyi area in Fujian, China".In the course of the research, we used a large number of vector maps of residential renovation in the Wuyishan area of China for training.Our study proposes a CGAN-based approach. The main purpose is to realize the style migration from local architectural style to village and town building facades, and to provide new design, decoration and restoration of building facades for the village and town architectural style. It has important practical value for the unified style and appearance management of large-scale and multi-building villages and towns.Our sample training images are divided into 3 types: building outline (BEP), functional zoning (FSL), and building facade (BE).Divided into 164 pictures, a total of 492 pictures. The BEP sample uses a grayscale image, and the color is black (R0, G0, B0). In the processing of FSL samples, in order to simplify the data, various elements in the building facade are represented by different colors and presented in the form of color pictures. In this study, 5 colors are used to represent the elements in the facade, that is, the door is red (R255, G99, B128), the window is green (R123, G132, B61), the wall is yellow (R243, G219, B181), and the guardrail is Blue (R3, G172, B213), brown roof (R171, G73, B64).
DOI: 10.3535/plc-ct2-fp7
title: †Spirifer Sowerby, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w56-z1q-8s5
title: †Leptaena Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16900324.v1
title: DATA TABLE AMPLITUDE .xlsx

description: In this study, the students underwent otoscopic inspection and audiological examination using DPOAE in a quiet, acoustically isolated room before and immediately after the exposure to laboratory noise to evaluate even temporary auditory threshold changes. The data refers to the amplitude of the signal and signal noise ratio, acquired by the DPOAE, and used for statistical comparisons in all individual frequency ranges analyzed.
DOI: 10.6084/m9.figshare.28250669.v1
title: Supplementary Table 7

description: Transcript counts corrected by limma (used to create Figure 4)
DOI: 10.3535/vne-q6s-xg8
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14107331.v3
title: intermediate_output_data_files_effect_verification_of_deep_knowledge_representation

description: These intermediate files are used to visually evaluate the effect of the representation learning models.<br><br>
DOI: 10.3535/n2c-80w-lf6
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zrp-aax-d2f
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0nf-l7t-vcd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mrr-95b-3w9
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23614899.v1
title: Dataset

description: Dataset of paper Investigating Developer Contributions to Test Smell Survivability: A Study of Open-Source Projects
DOI: 10.6084/m9.figshare.26608692.v1
title: Additional file 2 of Medication overdose data analysis: a review of medication error reports in the FDA adverse event reporting system (FAERS)

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.5878264.v3
title: Pan-European landslide susceptibility mapping: ELSUS Version 2

description: We present an updated version of the European landslide susceptibility map ELSUS 1000 released through the European Soil Data Centre in 2013. The ELSUS V2 map shows the landslide susceptibility zonation for individual climate-physiographic zones across Europe. ELSUS V2 covers a larger area of Europe than ELSUS 1000 at a higher spatial resolution (200 × 200 m). The updated map was prepared using the same semi-quantitative method as for ELSUS 1000, combining landslide frequency ratios information with a spatial multi-criteria evaluation model of three thematic predictors: slope angle, shallow subsurface lithology and land cover. However, the new map was prepared using also: (i) an extended landslide inventory, containing 30% of additional locations for model calibration, map validation and classification and (ii) a new lithological data set derived from the International Hydrogeological Map of Europe (IHME). The new version of the map increases the overall predictive performance of ELSUS by 8 %.
DOI: 10.3535/05p-q50-dz5
title: †Orthis Dalman, 1828

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3jn-g5t-jv1
title: Omphyma turbinata (Linnaeus)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24592038.v1
title: empathy anxiety dp

description: This study explores the relationships among empathy, anxiety, and the tendency of defensive-pessimism-strategy usage (DP tendency) in Japanese university students within academic and friendship contexts. Utilizing a scenario-based method, a survey was conducted with 70 students, and data from 43 with high DP tendencies were analyzed. Results reveal that empathetic fantasy significantly influences DP tendencies. Additionally, trait anxiety impacts DP tendencies, while the effect of state anxiety varies across situations. A moderate correlation is found for DP tendencies between the two settings. The discussion delves into the cognitive aspects of empathy and cultural influences on DP tendencies among participants.
DOI: 10.3535/3f8-d16-4lk
title: Acidaspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e8r-4fe-19x
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3921880_d1.v1
title: Additional file 1: of Expression of adiponectin in the subchondral bone of lumbar facet joints with different degrees of degeneration

description: The dataset supporting the conclusions of this article. (XLSX 27Â kb)
DOI: 10.3535/lyd-3g2-77x
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27173127.v2
title: Synthesizing a preliminary framework of climate change acceptance

description: We used thematic analysis to identify and describe constructs, or content areas, of climate change acceptance in existing items. We also enumerated the frequency of each construct and their co-occurrence in items.
DOI: 10.3535/fqk-7ag-mb4
title: †Dicoelosia King, 1850

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nc7-89a-f2v
title: Platycladus Spach

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5373370.v1
title: Lipid 2010 summary data

description: The Original data were downloaded from http://csg.sph.umich.edu/abecasis/public/lipids2010/.<br>We pre-processed the data to be compatible with TWAS related software. Please cite the following manuscript for using the data:<br>Xu, Z., Wu, C., Peng, W., & Pan, W. (2017). A powerful framework for integrating eQTL and GWAS summary data. Submitted to Genetics.<br><br>
DOI: 10.3535/rwk-kdg-26w
title: †Retzia King, 1850

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24845043.v1
title: Male proboscis monkey cranionasal size and shape is associated with visual and acoustic signaling

description: The large nose adorned by adult male proboscis monkeys is hypothesised to serve as an audiovisual signal of sexual selection. It serves as a visual signal of male quality and social status, and as an acoustic signal, through the expression of loud, low-formant nasalised calls in dense rainforests, where visibility is poor. However, it is unclear how the male proboscis monkey nasal complex, including the internal structure of the nose, plays a role in visual or acoustic signalling. Here, we use cranionasal data to assess whether large noses found in male proboscis monkeys serve visual and/or acoustic signalling functions. Our findings support a visual signalling function for male nasal enlargement through a relatively high degree of nasal aperture sexual size dimorphism, the craniofacial region to which nasal soft tissue attaches. We additionally find nasal aperture size increases beyond dental maturity among male proboscis monkeys, consistent with the visual signalling hypothesis. We show that the cranionasal region has an acoustic signalling role through pronounced nasal cavity sexual shape dimorphism, wherein male nasal cavity shape allows the expression of loud, low-formant nasalised calls. Our findings provide robust support for the male proboscis monkey nasal complex serving both visual and acoustic functions.
DOI: 10.3535/1jz-82q-r1h
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.