cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/ovnhou
title: Unitary Qubit Lattice Algorithm for Three-Dimensional Vortex Solitons in Hyperbolic Self-Defocusing Media

description: A qubit unitary lattice algorithm is developed for the 3D generalized Gross-Pitaevskii equation in which dark optical vortices are stabilized by a transverse bright soliton. It is shown how to generalize the unitary collision operator in order to switch the elliptic operator into a hyperbolic one. These unitary algorithms can be run on a quantum computer.
description: PSFC REPORT PSFC/JA-18-52<br><br>A.R was supported by the U.S Department of Energy Grants #DE-FG02-91ER-54109 and DEFC02- 01ER54648.
DOI: 10.7910/dvn/p6k4be
title: Catalog of Cyphophthalmi

description: The suborder Cyphophthalmi includes ca. 170 described species and subspecies of small Opiliones ranging from about 1-6 mm in length, found worldwide, with a rather ancient distribution. The family Sironidae is distributed in Japan, Europe and North America. The family Pettalidae follows a typical temperate Gondwanan distribution. The family Troglosironidae, endemic to New Caledonia, is the sister group to the family Neogoveidae, found in tropical South America, West Africa and the SE USA. The family Ogoveidae is endemic to West Africa where it co-occurs with members of Neogoveidae. The family Stylocellidae is restricted to Sundaland and Wallacea, reaching as far North as China. The low dispersal ability of Cyphophthalmi results in one of the highest degrees of endemism of any animal groups known to me. About 60% of the described species are only known from the type locality, although this number may also reflect the difficulty in finding these cryptic leaf-litter-inhabitants. Another interesting aspect of the cyphophthalmid diversity is their ability to undergo explosive radiations, as represented by the pettalids of New Zealand (with about 20% of the World described diversity!), Afromontane forests of South Africa, and by the sironids from the Balkans. Cyphophthalmi constitute an excellent example for studying aspects of biodiversity, endemism, biogeography, and evolutionary history.
DOI: 10.7910/dvn/t7rdkh
title: Thailand (2005): HIV/AIDS TRaC Study among Transgenders in Pattaya First Round

description: 1) To gain comprehensive and detailed data for informing PSI's interventions with transgenders; 2) To segment the population according to consistent condom use with regular partners, consistent condom use with casual partners, and consistent water-based lubricant use; 3) To identify key determinants (OAM Opportunity, Ability and Motivation) associated with each behavior; and 4) To obtain baseline information for monitoring key indicators, behavior change, OAM determinants, and exposure to PSI Thailand's interventions. Respondent-Driven Sampling (RDS) was used to collect data from 400 transgenders aged 15-35 in Pattaya. For inclusion in the study, transgenders must have been living in Pattaya for at least three months and work or socialize in hot zones, which are in North, Central and South Pattaya, at least three nights a week. The self-administered questionnaire covered demographic information, sexual behavior, condom and lubricant use, OAM determinants, and exposure to PSI's interventions. Multivariate analyses were performed to identify significant determinants of condom and water-based lubricant use. Simple frequencies were run on descriptive data to complete the monitoring table.
DOI: 10.7910/dvn/3okhky
title: Replication code and data for "Clawback Provisions and Firm Risk"

description: This is replication code and data for Clawback Provisions and Firm Risk.
DOI: 10.7910/dvn/674zdj
title: link (data, method, supplement) sharing in arXiv papers by Jun 2022

description: This dataset is associated with paper "The Rise of Open Science: Tracking the Evolution and Perceived Value of Data and Methods Link-Sharing Practices" by Hancheng Cao, Jesse Dodge, Kyle Lo, Daniel A. McFarland, and Lucy Lu Wang.
DOI: 10.7910/dvn/67emus
title: A15_28822.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/063afa0f-85df-4c89-a9f6-5615f06778d3'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/063afa0f-85df-4c89-a9f6-5615f06778d3
DOI: 10.7910/dvn/fxjmmd
title: EarthCube Data

description: This is a compilation of three stakeholder surveys conducted for the NSF EarthCube initiative looking at data sharing and reuse in the geosciences.
DOI: 10.7910/dvn/o3wnfh
title: Togo (2005): VIH/SIDA Enquete TRaC pour Evaluer l'Utilisation Consistante du Preservatif chez les Routiers en Union avec les Partenaires Regulieres Premier Passage

description: Cette enquete vise a mieux orienter les activites de PSI/Togo contre le VIH/IST/SIDA en determiner le niveau d'utilisation systematique du preservatif et les determinants de ce comportement parmi 1848 routiers sur l'axe Kodjoviakope-Sanvee Condji et Lome-cinkasse. Les analyses ont plus specifiquement porte sur ceux en union et ayant eu au cours des 12 derniers mois precedent l'enquete au moins une partenaire sexuelle reguliere en dehors de leurs epouses.
DOI: 10.7910/dvn/sdop0
title: House Unpassed Legislation 1849, Docket 2318A, SC1/series 230, Petition of James S. Fay

description: &lt;p&gt;Petition subject: Abolition of capital punishment &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:13481472"&gt;http://nrs.harvard.edu/urn-3:FHCL:13481472&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Athol &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: Mr. John M. Spear, Boston; Christopher C. Tilden, Hanson; committee on the subject &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;James S. Fay&lt;/li&gt;&lt;li&gt;John H. Humphreys&lt;/li&gt;&lt;li&gt;Catharine Cutlin&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1849-03-09,1849-03-12 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on March 9, 1849 and referred to the committee on the subject and sent for concurrence and received in the Senate on March 12, 1849 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 105 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 78 &lt;/p&gt; &lt;p&gt;Female signatures: 27 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: inhabitants, legal voters, women and others, women, [females], ["others"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Signatory column format: column separated &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: [payment] &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: House Unpassed 1849, Docket 2318A &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/ef9i1w
title: Replication Data for: Can Electronic Monitoring Reduce Reoffending

description: Williams, Jenny, and Weatherburn, Don, (2022) “Can Electronic Monitoring Reduce Reoffending?.” Review of Economics and Statistics 104:2, 232–245.
description: Volume XX, Issue X
DOI: 10.7910/dvn/ehddbr
title: The relationship of fetuin-A with coronary calcification, carotid atherosclerosis and mortality risk in non-dialysis chronic kidney disease

description: The raw data for confirmation of the accuracy of the analysis but also the results of the trial.
DOI: 10.7910/dvn/zon2rj
title: L1451-MMS

description: VLA Ka-band data for L1451-MMS
DOI: 10.15468/dl.xhrdg2
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017757-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57765/2003419
title: Thermodynamic dataset of Aso key basalts

description: This is a back data of Miyagi et al., (2023), which summarizes a series of thermodynamic analyses performed using the Rhyolite-MELTS software on the magma compositions of Aso volcano.
DOI: 10.5061/dryad.1cd96t8p
title: Data from: Can interbreeding of wild and artificially propagated animals be prevented by using broodstock selected for a divergent life history?

description: Two strategies have been proposed to avoid negative genetic effects of
 artificially propagated individuals on wild populations: (i) integration
 of wild and captive populations to minimize domestication selection, and
 (ii) segregation of released individuals from the wild population to
 minimize interbreeding. We tested the efficacy of the strategy of
 segregation by divergent life history in a steelhead trout, Oncorhynchus
 mykiss system, where hatchery fish were selected to spawn months earlier
 than the indigenous wild population. Up to 80% of the naturally produced
 steelhead in any given year were hatchery-wild hybrids. The proportion of
 wild ancestry smolts and adults declined by 10 to 20% over the three
 generations since the beginning of the program, due to an increase in
 hybrids. Regression model selection analysis suggested that proportions of
 hybrid smolts and adults were positively correlated with the number of
 naturally spawning hatchery-produced adults. Furthermore, the proportion
 of smolt hybrids was higher in years with high stream discharge allowing
 hatchery fish to bypass the weir protecting wild spawning habitat.
 Divergent life history failed to prevent interbreeding when physical
 isolation was compromised following changes in environmental conditions,
 an inadequacy of the segregation strategy that is likely to prevail in
 many other situations.
description: Seamons_ForksCreek_steelhead_Evol_Apps_DRYAD
DOI: 10.5061/dryad.8g713
title: Data from: Host behavior drives parasite genetics at multiple geographic scales: population genetics of the chewing louse, Thomomydoecus minor

description: Pocket gophers and their symbiotic chewing lice form a host–parasite
 assemblage known for a high degree of cophylogeny, thought to be driven by
 life history parameters of both host and parasite that make host switching
 difficult. However, little work to date has focused on determining whether
 these life histories actually impact louse populations at the very fine
 scale of louse infrapopulations (individuals on a single host) at the same
 or at nearby host localities. We used microsatellite and mtDNA sequence
 data to make comparisons of chewing-louse (Thomomydoecus minor) population
 subdivision over time and over geographic space where there are different
 potential amounts of host interaction surrounding a zone of contact
 between two hybridizing pocket-gopher subspecies. We found that chewing
 lice had high levels of population isolation consistent with a paucity of
 horizontal transmission even at the very fine geographic scale of a single
 alfalfa field. We also found marked genetic discontinuity in louse
 populations corresponding with host subspecies and little, if any,
 admixture in the louse genetic groups even though the lice are closely
 related. The correlation of louse infrapopulation differentiation with
 host interaction at multiple scales, including across a discontinuity in
 pocket-gopher habitat, suggests that host behaviour is the primary driver
 of parasite genetics. This observation makes sense in light of the life
 histories of both chewing lice and pocket gophers and provides a powerful
 explanation for the well-documented pattern of parallel cladogenesis in
 pocket gophers and chewing lice.
description: Gopher Rag1 all alleles
 fasta fileHeterozygous sequences
 are treated as individual alleles.Gopher Rag all
 alleles.fastaGopher IRBP alleles
 fasta fileHeterozygous sequences
 are treated as individual alleles.Gopher IRBP
 alleles.fastaGopher Bfib multiple
 alleles fasta fileHeterozygous sequences
 are treated as individual alleles.Gopher Bfib multiple
 alleles.fastaGopher CO1 fasta
 fileGopher
 CO1.fastaGopher Rag NJ
 treeGopher IRBP NJ
 treeGopher Bfib NJ
 treeGopher CO1 NJ
 treeThomomydoecus minor msat
 Genotypes Ready For ConvertThomomydoecus minor 7 loci msat
 Genotypes Ready For Convert.xlsxThomomydoecus minor 7
 loci 15 infrapopulations input for StructureThomomydoecus minor 7
 loci Southern pops only input for StructureThomomydoecus minor 7
 loci Northern pops only input for StructureThomomydoecus minor 7
 loci input for FSTAT13BigPops7lociBayesAss.inThomomydoecus7Loci15pops input for ArlequinThomomydoecus 275 specimens COI dataThomomydoecus 275 specimens COI treeThomomydoecusmtDNA input for Arlequin.275
DOI: 10.5061/dryad.db561
title: Data from: Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts

description: Estimates of diversification rates are invaluable for many
 macroevolutionary studies. Recently, an approach called BAMM (Bayesian
 Analysis of Macro-evolutionary Mixtures) has become widely used for
 estimating diversification rates and rate shifts. At the same time,
 several papers have concluded that estimates of net diversification rates
 from the method-of-moments (MS) estimators are inaccurate. Yet, no studies
 have compared the ability of these two methods to accurately estimate
 clade diversification rates. Here, we use simulations to compare their
 performance. We found that BAMM yielded relatively weak relationships
 between true and estimated diversification rates. This occurred because
 BAMM underestimated the number of rates shifts across each tree, and
 assigned high rates to small clades with low rates. Errors in both
 speciation and extinction rates contributed to these errors, showing that
 using BAMM to estimate only speciation rates is also problematic. In
 contrast, the MS estimators (particularly using stem group ages), yielded
 stronger relationships between true and estimated diversification rates,
 by roughly twofold. Furthermore, the MS approach remained relatively
 accurate when diversification rates were heterogeneous within clades,
 despite the widespread assumption that it requires constant rates within
 clades. Overall, we caution that BAMM may be problematic for estimating
 diversification rates and rate shifts.
description: BAMM Control
 FilesSnake Tree
 Files
DOI: 10.5061/dryad.71mn5
title: Data from: Tempo does not correlate with mode in the fossil record

description: The dominating view of evolution based on the fossil record is that
 established species remain more or less unaltered during their existence.
 Substantial evolution is on the other hand routinely reported for
 contemporary populations, and most quantitative traits show high potential
 for evolution. These contrasting observations on long and short time
 scales are often referred to as the paradox of stasis, which rests on the
 fundamental assumption that periods of morphological stasis in the fossil
 record represent minimal evolutionary change. Investigating 450 fossil
 time series, I demonstrate that the non-accumulating morphological
 fluctuations during stasis travel similar distances in morphospace space
 compared to lineages showing directional change. Hence, lineages showing
 stasis are commonly undergoing considerable amounts of evolution, but this
 evolution does not accumulate to produce large net evolutionary changes
 over time. Rates of evolutionary change across modes in the fossil record
 may be more homogenous than previously assumed and advocated, supporting
 the claim that substantial evolution is not exclusively or causally linked
 to the process of speciation. Instead of exemplifying minimal evolution,
 stasis likely represents information on the dynamics of the adaptive
 landscape on macroevolutionary time scales, including the persistence of
 adaptive zones and ecological niches over millions of years.
description: Fossil time
 seriesZip file containing 450
 fossil time series.Time
 series.zipR script Tempo and
 modeR
 script for analyzing the data file
 'tempo_and_mode.csv'.tempo_and_modeFile containing the results of the analyses of the 450 time series, e.g., maximum likelihood estimates of model parameters for the modes Stasis, Random walk and Directional change, Akaike weights, estimates of net evolution, distance traveled in morphospace etc.dist.in.morphospaceR function that calculates the measures of evolution used in the paper 'Tempo does not correlate with mode in the fossil record'.
DOI: 10.5061/dryad.gr0p7
title: Data from: Tree, sex and size: ecological determinants of male versus female fecundity in three Fagus sylvatica stands

description: Inter-individual variation in fecundities has major consequences on
 population evolutionary potential, through genetic drift and selection.
 Using two spatially explicit mating models that analyze the genotypes of
 seeds and seedlings, we investigated the variation of male and female
 fecundities within and among three European beech (Fagus sylvatica) stands
 situated along an elevational gradient. Female and male individual
 fecundity distributions were both skewed in this monoecious species, and
 we found a higher variance in female as compared to male fecundities. Both
 female and male fecundities increased with tree size and decreased with
 density and competition in the neighborhood, the details of these effects
 suggesting sex-specific strategies to deal with the impact of limited
 resource on fecundity. The studied populations were functionally
 male-biased. Among-individual variations in functional gender were not
 driven by tree size but by density and competition in the neighborhood,
 consistently with the expectation of a decreasing femaleness under limited
 resource availability due to higher cost of female reproduction.
 Considering the variation of gene flow and genetic drift across elevation,
 our results suggest that the adaptive potential could be enhanced by low
 genetic drift at low elevation, and by high pollen-mediated gene flow at
 high elevation. Finally, this study predicts a more efficient response to
 selection for traits related to male versus female fitness, for a given
 selection intensity.
description: Genotypes and
 coordinates of adult trees, seedlings and seeds at plot
 N1see
 ReadMe.txtN1_Genotypes.csvGenotypes and coordinates of adult trees, seedlings and seeds at plot N4see Readme.txtN4_Genotypes.csvGenotypes and coordinates of adult trees and seeds at plot N2see readme.txtN2_Genotypes_AdultSeed.csvGenotypes and coordinates of adult trees and seedlings at plot N2see ReadMe.txtN2_Genotypes_AdultSeedlings.csvEcological and fecundity data for all the adult trees from the three plotssee readme.csvEcologicalData.csv
DOI: 10.5061/dryad.h544560
title: Data from: Observational study of clinical characteristics of dome-shaped macula in Chinese Han with high myopia at Zhongshan Ophthalmic Center

description: Purpose: To evaluate the prevalence of dome-shaped macula (DSM) in highly
 myopic eyes among Chinese Han and to detect the correlation with myopic
 maculopathy and macular complications. Methods: A total of 736 Chinese Han
 patients (1384 eyes) with high myopia (refractive error &lt;-6.0
 diopters or axial length ≥26.5mm) are reviewed based on information
 entered into a high myopia database at Zhongshan Ophthalmic Center.
 Subfoveal choroidal thickness (SFCT) and parafoveal choroidal thickness
 (PFCT) are measured. The prevalence of DSM in patients with myopic
 maculopathy categorized from C0 to C4. Clinical features, including
 macular complications, SFCT and PFCT, are compared between myopic eyes
 with and without DSM. Results: Among the 1384 eyes, 149 (10.77%) show DSM.
 In highly myopic eyes without macular complications, the best corrected
 visual acuity is significantly worse in patients with DSM (P=0.002), and
 the ratio between subfoveal and parafoveal choroidal thickness (S/PCT) is
 significantly elevated in patients with DSM (P=0.021). The proportion of
 foveal schisis (17.24% vs. 62.86%) is much lower in eyes with DSM compared
 to those without DSM. However, the proportions of extrafoveal schisis
 (39.66% vs. 5.37%), foveal serous retinal detachment (SRD) (5.17% vs. 0)
 and epiretinal membrane (ERM) (24.14% vs. 10.74%) are much higher in eyes
 with DSM. The proportion of DSM was lower in C0 and C1, but higher
 proportion of DSM was found in C3 and C4. Conclusions: DSM is found in
 10.77% of highly myopic eyes among Chinese Han. DSM might be a protective
 mechanism for foveal schisis and a risk factor for extrafoveal schisis,
 SRD and ERM.
description: high myopia
 database
DOI: 10.5061/dryad.416nn63
title: Data from: Inclusive fitness benefits mitigate costs of cuckoldry to socially paired males

description: Background: In socially monogamous species, reproduction is not always
 confined to paired males and females. Extra-pair males commonly also
 reproduce with paired females, which is traditionally thought to be costly
 to the females’ social partners. However, we suggest that when the
 relatedness between reproducing individuals is considered, cuckolded males
 can suffer lower fitness losses than otherwise expected, especially when
 the rate of cuckoldry is high. We combine theoretical modeling with a
 detailed genetic study on a socially monogamous wild fish,
 Variabilichromis moorii, which displays biparental care despite
 exceptionally high rates of extra-pair paternity. Results: We measured the
 relatedness between all parties involved in V. moorii spawning events
 (i.e. between males and females in social pairs, females and their
 extra-pair partners, and paired males and their cuckolders), and we reveal
 that males are on average more related to their cuckolders than expected
 by chance. Queller–Goodnight estimates of relatedness between males and
 their cuckolders are on average r = 0.038 but can range up to r = 0.64.
 This also increases the relatedness between males and the extra-pair
 offspring under their care. These intriguing results are consistent with
 the predictions of our mathematical model, which shows that elevated
 relatedness between paired males and their cuckolders can be adaptive for
 both parties when competition for fertilizations is strong. Conclusions:
 Our results show how cuckoldry by relatives can offset males’ direct
 fitness losses with inclusive fitness gains, which can be substantial in
 systems where males face almost certain paternity losses.
description: Data from: Inclusive
 fitness benefits mitigate costs of cuckoldry to socially paired
 malesVariabilichromis
 moorii.zip