cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28606957.v1
title: Biokinetics of inhaled silver, gold, copper oxide, and zinc oxide nanoparticles: a review

description: The understanding of nanomaterial toxicity is aided by biokinetic information pointing to potential target organs. Silver (Ag), copper oxide (CuO), and zinc oxide (ZnO) are often referred to as soluble materials in the literature. In addition, data suggest gold (Au) nanoparticles to be soluble in the mammalian body. We identified inhalation studies on these materials and extracted data on physicochemical properties, organ distribution, and excretion. Silver and gold were retained in the lung for an extended period (&gt;2,000 and &gt;672 hours, respectively); copper initially increased in lung and then returned to baseline at ∼500 hours. Zinc increased in the lungs after short-term exposure to zinc oxide, but not after prolonged exposure. In blood, silver initially increased after inhalation but then gradually declined over ∼200 hours. Gold was elevated in the blood after exposure to 4, 7, 11, and 13 nm particles (but not particles of 20, 34, and 105 nm) and remained elevated for at least 672 hours after exposure to the 4 and 11 nm particles. Silver increased in the liver and spleen and was still present 2,000 hours post exposure. Gold was elevated in several organs, including the spleen and kidney, for more than 600 hours post exposure, indicating persistence in some organs. Both silver and gold were increased in the brain and olfactory bulb. Overall, we found no large differences in the biodistribution of the four nanomaterials but note that silver and gold were still increased in several organs at the last investigated post-exposure time points.
DOI: 10.6084/m9.figshare.29109437.v1
title: Recent advances and future perspectives in small molecule JAK2 inhibitors

description: The Janus kinase (JAK)/Signal Transducer and Activator of Transcription (STAT) signaling pathway is essential for controlling immune function, blood cell formation, and cell growth. Dysregulation of this pathway is implicated in various diseases, including hematologic malignancies, autoimmune disorders, and chronic inflammatory conditions. This review provides a comprehensive overview of the structural and functional aspects of JAK/STAT signaling, with a particular focus on the role of JAK2. This manuscript explores the primary regulators of the JAK/STAT pathway, such as Suppressors Of Cytokine Signaling (SOCS), Protein Inhibitors of Activated STATs (PIAS), and Protein Tyrosine Phosphatases (PTPs), which play a crucial role in maintaining cellular balance and stability. Additionally, the therapeutic landscape of JAK2 inhibitors is explored, covering both approved and investigational drugs, including their mechanisms of action, efficacy, and safety profiles. Emerging strategies such as drug repositioning using computational approaches and experimental validation are also highlighted. By integrating insights from molecular docking studies, machine learning models, and kinase assays, this review emphasizes the potential of JAK2 inhibitors in disease management.
DOI: 10.15468/dl.4gcx6u
title: Occurrence Download

description: A dataset containing 2740 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenostigma pluviosum (DC.) Gagnon & G.P.Lewis"
 ]
}

 The dataset includes 2740 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020038-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/askkcb
title: Morphophysiological adaptations of common buckwheat to silicon application under salt stress

description: This dataset presents experimental data on the effects of foliar silicon application on the growth and photosynthetic efficiency of common buckwheat (Fagopyrum esculentum cv. Smuga) under salt stress. The study was conducted at the Poznań University of Life Sciences, Poland, during the 2024 growing season. Buckwheat plants were subjected to 50 mM NaCl stress, and a foliar spray of a 1 mM sodium metasilicate nonahydrate (Na2SiO3·9H2O) solution was applied at a rate equivalent to 400 L ha⁻¹. The dataset includes the following files: Morphology.xlsx- contains data on growth attributes, including root and shoot length, leaf number, leaf thickness, and fresh and dry weights of roots and shoots. OJIP Curve.xlsx- provides chlorophyll a fluorescence (OJIP) transients of dark-adapted plants, recorded using a FluorPen FP 110/D instrument. OJIP Parameters.xlsx- includes various chlorophyll fluorescence parameters derived from OJIP transients. Photosynq Parameters.xlsx- contains photosynthetic parameters based on fluorescence and electrochromic shifts, measured using a MultispeQ V2.0 device connected to the PhotosynQ platform. Temperature.xlsx and PAR.xlsx- provide temperature and photosynthetic photon flux density (PPFD) data from the growing season during the experiment. This dataset is valuable for researchers studying abiotic stress tolerance mechanisms in plants. For further details on the experiment, refer to ReadMe.pdf.
DOI: 10.15468/dl.7snpjv
title: Occurrence Download

description: A dataset containing 131 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Underwater video and still-image dataset of fishes and other aquatic animals in Lake Biwa, Japan, observed via carp-mounted video loggers."
 ]
}

 The dataset includes 131 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020041-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/wdm4gq
title: Geospatial data on land use changes within the Bagno Chlebowo peatland

description: This dataset contains the results of Land Use/Land Cover changes (LULC) analysis within the Bagno Chlebowo peatland (52°43'54''N, 16°44'7''E). Data was created as a result of analysis of archival and contemporary cartographic materials (Ur-messtischblatt maps, sheet 1713 from 1832; Messtischblatt from 1892, Polajewo sheet) and the BDOT10k geospatial database (from 2020).The data was created in GIS software and may be displayed, validated, and edited in an open software, e.g., QGIS.The dataset contains the following LULC classes: wetland, forest, open water, open area, and streams.The shx, dbf, cpg, prj, and qmd are supported by the open QGIS software and are auxiliary files for the correct operation of the shp file. The final results of the spatial analysis are displayed in LULC1823-2020.pdf.
DOI: 10.15468/dl.56ndck
title: Occurrence Download

description: A dataset containing 2855 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenostigma pyramidale (Tul.) Gagnon & G.P.Lewis"
 ]
}

 The dataset includes 2855 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020042-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.28938788.v1
title: Supplementary material

description: Elemental composition analysis, anisotropic magnetoresistance, the determination of the Gilbert damping constant, time-resolved magneto-optical Kerr effect measurements, and calculations of the nonlinearity coefficient.
DOI: 10.60893/figshare.apl.28938788
title: Supplementary material

description: Elemental composition analysis, anisotropic magnetoresistance, the determination of the Gilbert damping constant, time-resolved magneto-optical Kerr effect measurements, and calculations of the nonlinearity coefficient.
DOI: 10.60893/figshare.apl.29098721.v1
title: Supplementary Material

description: Supplementary material for experiment methods of device fabrication and measurements, Raman spectra, capacitance-frequency and phase angle-frequency Measurements, Calculation using the mass action law, TRPL measurements and DFT calculations details.
DOI: 10.60893/figshare.apl.29098721
title: Supplementary Material

description: Supplementary material for experiment methods of device fabrication and measurements, Raman spectra, capacitance-frequency and phase angle-frequency Measurements, Calculation using the mass action law, TRPL measurements and DFT calculations details.
DOI: 10.5281/zenodo.15592724
title: Synthetic RDF Data

description: This dataset contains synthetic RDF data generated as part of my master's thesis research. The data was generated based on SHACL (Shapes Constraint Language) shapes that define the structure and constraints of RDF graphs.

Two different generative models were used:





GAN (Generative Adversarial Network): Used to model and sample property values by learning the distribution of entities and relationships.




VAE (Variational Autoencoder): Used to capture the latent distribution of data features and generate new, realistic RDF instances while preserving SHACL constraints.



The primary objective was to produce high-quality, diverse synthetic knowledge graph data that:





Adheres to SHACL constraints




Represents realistic distributions




Is suitable for testing RDF-based systems and knowledge graph pipelines
DOI: 10.15468/dl.qy3rus
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centaurea tchihatcheffii Fisch. & C.A.Mey."
 ]
}

 The dataset includes 17 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020043-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/bmrnzx
title: script2.sh

description: script for example 2 
run "sh script2.sh" in Unix environment
DOI: 10.57745/c5gpnx
title: renum_ex1.par

description: parameter file for renumf90 (example 1)
DOI: 10.57745/feoqtb
title: parm_renum2

description: :unav
DOI: 10.57745/hkhckz
title: script3.sh

description: script to launch a bivariate gibbsf90+ analysis including the liver class as a categorical trait.
DOI: 10.57745/simfz6
title: script1.sh

description: script for example 1 
run "sh script1.sh" in Unix environment
DOI: 10.57745/uelryb
title: gibbs_samples.R

description: R script to read the output of gibbsf90+
DOI: 10.57745/xmnqdr
title: renum_ex3.par

description: parameter file needed by renumf90
DOI: 10.57745/y9umkv
title: parm_renum3.txt

description: contains the name of the parameter file needed by renumf90
DOI: 10.57745/yadvgi
title: parm_renum1

description: :unav
DOI: 10.57745/yfcxdq
title: parm_reml

description: contains the expected argument for blupf90+
DOI: 10.57745/zyqvbz
title: renum_ex2.par

description: parameter file for renumf90 (example 2)
DOI: 10.15468/dl.dqv4pr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Georgia",
 "TaxonKey is Suncus etruscus (Savi, 1822)"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020046-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8tqhw
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sus philippensis Nehring, 1886"
 ]
}

 The dataset includes 96 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020044-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.apl.29040785
title: Interface cif files

description: Atomistic structure of 2D-amorphous Ta2O5 interfaces
DOI: 10.60893/figshare.apl.29040785.v1
title: Interface cif files

description: Atomistic structure of 2D-amorphous Ta2O5 interfaces
DOI: 10.15468/dl.gzvyyh
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sus philippensis Nehring, 1886"
 ]
}

 The dataset includes 96 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020045-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9vest
title: Occurrence Download

description: A dataset containing 164893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Sterna paradisaea Pontoppidan, 1763)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 164893 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020031-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12684223
title: Dataset related to the article "A Minimal Mutation Trajectory Separates Inverting and Retaining Mechanisms on the Same Sialidase Structural Scaffold"

description: This dataset contains files related to the article "Two mutations alter the inverting mechanism of a specific sialidase to retaining" by Michael Jakob Pichler, Marina Corbella, Sebastian Meier, Tine Sofie Neilsen, Sanchari Banerjee, Jens Preben Morth, Carme Rovira and Maher Abou Hachem.

Description of the files:

Simulation data:

- classical_md_simulations: includes the inputs, topologies, starting coordinates and starting pdb structures of the classical MD simulation of AmGH181 unliganded and wild-type and H349A/Q350Y in complex with sialyl T-antigen, as well as the restart files of each of the three replicates every 100 ns of simulation.

- qmmm_simulations: includes the inputs for equilibration and metadynamics, topologies and the starting structures extracted from the classical MD simulations for the Inverting (wild-type liganded) and Retaining (H349A/Q350Y) reaction mechanisms, as well as the restart files every 10 ps of simulation and HILLS files.

Relevant structures for the reactant states (RS.pdb), transition states (TS.pdb), product states (PS.pdb) and relaxed product states (PS_relax.pdb) along each path, are  included in thei corresponding directories.
DOI: 10.5281/zenodo.12684224
title: Dataset related to the article "A Minimal Mutation Trajectory Separates Inverting and Retaining Mechanisms on the Same Sialidase Structural Scaffold"

description: This dataset contains files related to the article "Two mutations alter the inverting mechanism of a specific sialidase to retaining" by Michael Jakob Pichler, Marina Corbella, Sebastian Meier, Tine Sofie Neilsen, Sanchari Banerjee, Jens Preben Morth, Carme Rovira and Maher Abou Hachem.

Description of the files:

Simulation data:

- classical_md_simulations: includes the inputs, topologies, starting coordinates and starting pdb structures of the classical MD simulation of AmGH181 unliganded and wild-type and H349A/Q350Y in complex with sialyl T-antigen, as well as the restart files of each of the three replicates every 100 ns of simulation.

- qmmm_simulations: includes the inputs for equilibration and metadynamics, topologies and the starting structures extracted from the classical MD simulations for the Inverting (wild-type liganded) and Retaining (H349A/Q350Y) reaction mechanisms, as well as the restart files every 10 ps of simulation and HILLS files.

Relevant structures for the reactant states (RS.pdb), transition states (TS.pdb), product states (PS.pdb) and relaxed product states (PS_relax.pdb) along each path, are  included in thei corresponding directories.
DOI: 10.15468/dl.yhvdug
title: Occurrence Download

description: A dataset containing 138369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Coenonympha arcania Linnaeus, 1761"
 ]
}

 The dataset includes 138369 records from 1351 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020040-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29244734
title: Ontology Element Knowledge Graph(OEKG) and a Case Study of Planting-OEKG

description: This project is aimed at the research requirements of ontology reuse. A ontology standardization organization idea for ontology element knowledge graph (OEKG) has been proposed, which can organize reusable elements of domain ontology resources in a fine-grained manner. The main documents of the project are as follows:A OWL files of element ontology;A dump files for Planting OEKG in the agricultural planting field that have been built can be directly imported into Neo4j.Some downloaded open-source ontology filesThe project related code includes three Python files: OWL file parsing, ontology element storage, and ontology basic information storage, which can support the basic construction process of OEKG.
DOI: 10.6084/m9.figshare.29244734.v2
title: Ontology Element Knowledge Graph(OEKG) and a Case Study of Planting-OEKG

description: This project is aimed at the research requirements of ontology reuse. A ontology standardization organization idea for ontology element knowledge graph (OEKG) has been proposed, which can organize reusable elements of domain ontology resources in a fine-grained manner. The main documents of the project are as follows:A OWL files of element ontology;A dump files for Planting OEKG in the agricultural planting field that have been built can be directly imported into Neo4j.Some downloaded open-source ontology filesThe project related code includes three Python files: OWL file parsing, ontology element storage, and ontology basic information storage, which can support the basic construction process of OEKG.
DOI: 10.6084/m9.figshare.29244734.v1
title: 本体要素知识图谱（OEKG）及种植案例研究-OEKG

description: 本项目针对本体复用的研究需求。提出了本体元素知识图谱（OEKG）的本体标准化组织思路，可以细粒度地组织领域本体资源的可复用元素。项目主要文档如下：元素本体的 OWL 文件;a 已构建的农业种植场种植 OEKG 的 dump 文件可以直接导入到 Neo4j 中。一些下载的开源本体文件相关代码包括 OWL 文件解析、本体元素存储和本体基本信息存储三个 Python 文件，可以支持 OEKG 的基本构建过程。
DOI: 10.15468/dl.mey63q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobarbus capensis (Smith, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021739-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29231741
title: Mortalidade materna associada à COVID-19 no Brasil em 2020-2021: estudo transversal

description: A pandemia de COVID -19 impactou o ciclo gravídico-puerperal, onde gestantes e puérperas foram consideradas grupo de risco porque suas respostas imunológicas podem estar alteradas. Com isso objetivamos analisar através do Sistema de Informação para a Vigilância Epidemiológica da Gripe os registros de hospitalização e óbito de gestantes e puérperas com COVID-19 no Brasil. Trata-se de um estudo transversal, realizado entre 27 de fevereiro de 2020 a 20 de dezembro de 2021. As variáveis ​​​​​foram: internação em UTI e óbito por COVID-19; entre as covariáveis: ​​sociodemografia, trimestre de gestação, pós-parto, sinais, sintomas e comorbidades. Foi realizada análise descritiva, em seguida análise univariada entre as covariáveis ​​de interesse e o desfecho, calculando-se o risco relativo e intervalo de confiança de 95%, as variáveis ​​que na análise univariada mais fortemente se associaram aos avanços (p&lt;0,20) foram consideradas. Houve 1.858 mortes (12,3%) para uma taxa de mortalidade materna de 7,5 (95% IC 7,1–7,8) por 1.000 pacientes-dia, com a incidência cumulativa aumentando ao longo do tempo. A mortalidade foi maior entre mulheres com comorbidades, mulheres negras apresentaram maior risco de óbito, apontando desigualdades no acesso e qualidade dos cuidados. Este estudo avaliou uma grande amostra de gestantes e puérperas com COVID-19, permitindo uma análise abrangente das características clínicas e fatores de risco associados a óbitos. No entanto, nossos resultados devem ser interpretados com cautela, necessitando de outros estudos nessa população.
DOI: 10.6084/m9.figshare.29231741.v1
title: Mortalidade materna associada à COVID-19 no Brasil em 2020-2021: estudo transversal

description: A pandemia de COVID -19 impactou o ciclo gravídico-puerperal, onde gestantes e puérperas foram consideradas grupo de risco porque suas respostas imunológicas podem estar alteradas. Com isso objetivamos analisar através do Sistema de Informação para a Vigilância Epidemiológica da Gripe os registros de hospitalização e óbito de gestantes e puérperas com COVID-19 no Brasil. Trata-se de um estudo transversal, realizado entre 27 de fevereiro de 2020 a 20 de dezembro de 2021. As variáveis ​​​​​foram: internação em UTI e óbito por COVID-19; entre as covariáveis: ​​sociodemografia, trimestre de gestação, pós-parto, sinais, sintomas e comorbidades. Foi realizada análise descritiva, em seguida análise univariada entre as covariáveis ​​de interesse e o desfecho, calculando-se o risco relativo e intervalo de confiança de 95%, as variáveis ​​que na análise univariada mais fortemente se associaram aos avanços (p&lt;0,20) foram consideradas. Houve 1.858 mortes (12,3%) para uma taxa de mortalidade materna de 7,5 (95% IC 7,1–7,8) por 1.000 pacientes-dia, com a incidência cumulativa aumentando ao longo do tempo. A mortalidade foi maior entre mulheres com comorbidades, mulheres negras apresentaram maior risco de óbito, apontando desigualdades no acesso e qualidade dos cuidados. Este estudo avaliou uma grande amostra de gestantes e puérperas com COVID-19, permitindo uma análise abrangente das características clínicas e fatores de risco associados a óbitos. No entanto, nossos resultados devem ser interpretados com cautela, necessitando de outros estudos nessa população.
DOI: 10.15468/dl.j8bbnt
title: Occurrence Download

description: A dataset containing 416256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Calidris alba (Pallas, 1764))",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 416256 records from 494 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019187-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7266/n7fn14rw
title: Red Snapper (Lutjanus campechanus) Otolith Δ14C Bomb Radiocarbon Chronometer in the northern Gulf of Mexico