cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11578/1562057
title: Design and simulation of the snowflake divertor control for NSTX-U

description: This paper presents the development of a physics-based multiple-input-multiple-output algorithm for real-time feedback control of snowflake divertor (SFD) configurations on the National Spherical Torus eXperiment Upgrade (NSTX-U). A model of the SFD configuration response to applied voltages on the divertor control coils is first derived and then used, in conjunction with multivariable control synthesis techniques, to design an optimal state feedback controller for the configuration. To demonstrate the capabilities of the controller, a nonlinear simulator for axisymmetric shape control was developed for NSTX-U which simultaneously evolves the currents in poloidal field coils based upon a set of feedback-computed voltage commands, calculates the induced currents in passive conducting structures, and updates the plasma equilibrium by solving the free-boundary Grad-Shafranov problem. Closed-loop simulations demonstrate that the algorithm enables controlled operations in a variety of SFD configurations and provides capabilities for accurate tracking of time-dependent target trajectories for the divertor geometry. In particular, simulation results suggest that a time-varying controller which can properly account for the evolving SFD dynamical response is not only desirable but necessary for achieving acceptable control performance. The algorithm presented in this paper has been implemented in the NSTX-U Plasma Control System in preparation for future control and divertor physics experiments.
DOI: 10.15129/699a004b-fbf3-4f37-b2f3-9c1c97f44f0f
title: Data for "Excitation modes of bright matter-wave solitons"

description: Data set for the publication "Excitation modes of bright matter-wave soliton" in Phys. Rev. Lett. (2019)
DOI: 10.21227/bhcp-ef15
title: Damage Detection and Characterisation in Composites using a Geometric Modification of the RAPID Algorithm

description: The dataset contains some tests which were performed over composite material samples, propagating Lamb waves using PZT transducers.
DOI: 10.5281/zenodo.3416461
title: Dataset related to article "Convolutional Neural Networks Promising in Lung Cancer T-Parameter Assessment on Baseline FDG-PET/CT"

description: This record contains raw data related to article "Convolutional Neural Networks Promising in Lung Cancer T-Parameter Assessment on Baseline FDG-PET/CT" Aim: To develop an algorithm, based on convolutional neural network (CNN), for the classification of lung cancer lesions as T1-T2 or T3-T4 on staging fluorodeoxyglucose positron emission tomography (FDG-PET)/CT images. Methods: We retrospectively selected a cohort of 472 patients (divided in the training, validation, and test sets) submitted to staging FDG-PET/CT within 60 days before biopsy or surgery. TNM system seventh edition was used as reference. Postprocessing was performed to generate an adequate dataset. The input of CNNs was a bounding box on both PET and CT images, cropped around the lesion centre. The results were classified as Correct (concordance between reference and prediction) and Incorrect (discordance between reference and prediction). Accuracy (Correct/[Correct + Incorrect]), recall (Correctly predicted T3-T4/[all T3-T4]), and specificity (Correctly predicted T1-T2/[all T1-T2]), as commonly defined in deep learning models, were used to evaluate CNN performance. The area under the curve (AUC) was calculated for the final model. Results: The algorithm, composed of two networks (a "feature extractor" and a "classifier"), developed and tested achieved an accuracy, recall, specificity, and AUC of 87%, 69%, 69%, and 0.83; 86%, 77%, 70%, and 0.73; and 90%, 47%, 67%, and 0.68 in the training, validation, and test sets, respectively. Conclusion: We obtained proof of concept that CNNs can be used as a tool to assist in the staging of patients affected by lung cancer.
DOI: 10.5281/zenodo.3416462
title: Dataset related to article "Convolutional Neural Networks Promising in Lung Cancer T-Parameter Assessment on Baseline FDG-PET/CT"

description: This record contains raw data related to article "Convolutional Neural Networks Promising in Lung Cancer T-Parameter Assessment on Baseline FDG-PET/CT" Aim: To develop an algorithm, based on convolutional neural network (CNN), for the classification of lung cancer lesions as T1-T2 or T3-T4 on staging fluorodeoxyglucose positron emission tomography (FDG-PET)/CT images. Methods: We retrospectively selected a cohort of 472 patients (divided in the training, validation, and test sets) submitted to staging FDG-PET/CT within 60 days before biopsy or surgery. TNM system seventh edition was used as reference. Postprocessing was performed to generate an adequate dataset. The input of CNNs was a bounding box on both PET and CT images, cropped around the lesion centre. The results were classified as Correct (concordance between reference and prediction) and Incorrect (discordance between reference and prediction). Accuracy (Correct/[Correct + Incorrect]), recall (Correctly predicted T3-T4/[all T3-T4]), and specificity (Correctly predicted T1-T2/[all T1-T2]), as commonly defined in deep learning models, were used to evaluate CNN performance. The area under the curve (AUC) was calculated for the final model. Results: The algorithm, composed of two networks (a "feature extractor" and a "classifier"), developed and tested achieved an accuracy, recall, specificity, and AUC of 87%, 69%, 69%, and 0.83; 86%, 77%, 70%, and 0.73; and 90%, 47%, 67%, and 0.68 in the training, validation, and test sets, respectively. Conclusion: We obtained proof of concept that CNNs can be used as a tool to assist in the staging of patients affected by lung cancer.
DOI: 10.6073/pasta/f1a7db45fc90d318a66040c16bbed2c8
title: Rabbit feces counts on 1m x 1m plots from the long-term Small Mammal Exclosure Study (SMES) at Jornada Basin LTER, 1995-2015

description: This data package contains rabbit feces count data from plots with various levels of herbivore exclusion on Jornada Experimental Range (JER) and Chihuahuan Desert Rangeland Research Center (CDRRC) lands. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at the grassland study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Because grazing cattle are excluded from the entire creosote site, only three replicate experimental blocks were randomly located there including a) all mammalian herbivores, including lagomorphs, and rodents, b) lagomorphs only, and c) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. Each year in spring and fall from 1995-2005, the total number of rabbit feces were counted within each quadrat. After 2005, sampling frequency channged to every 5 years and data collected record only presence or absence of feces. This study is ongoing.
DOI: 10.11578/1562058
title: Fusion Nuclear Science Facilities and Pilot Plants Based on the Spherical Tokamak

description: A Fusion Nuclear Science Facility (FNSF) could play an important role in the development of fusion energy by providing the nuclear environment needed to develop fusion materials and components. The spherical torus/tokamak (ST) is a leading candidate for an FNSF due to its potentially high neutron wall loading and modular configuration. A key consideration for the choice of FNSF configuration is the range of achievable missions as a function of device size. Possible missions include: providing high neutron wall loading and fluence, demonstrating tritium self-sufficiency, and demonstrating electrical self-sufficiency. All of these missions must also be compatible with a viable divertor, first-wall, and blanket solution. ST-FNSF configurations have been developed simultaneously incorporating for the first time: (1) a blanket system capable of tritium breeding ratio TBR approximately 1, (2) a poloidal field coil set supporting high elongation and triangularity for a range of internal inductance and normalized beta values consistent with NSTX/NSTX-U previous/planned operation, (3) a long-legged divertor analogous to the MAST-U divertor which substantially reduces projected peak divertor heat-flux and has all outboard poloidal field coils outside the vacuum chamber and superconducting to reduce power consumption, and (4) a vertical maintenance scheme in which blanket structures and the centerstack can be removed independently. Progress in these ST-FNSF missions vs. configuration studies including dependence on plasma major radius R0 for a range 1m to 2.2m are described. In particular, it is found the threshold major radius for TBR = 1 is R0 greater than or equal to 1.7m, and a smaller R0=1m ST device has TBR approximately 0.9 which is below unity but substantially reduces T consumption relative to not breeding. Calculations of neutral beam heating and current drive for non-inductive ramp-up and sustainment are described. An A=2, R0=3m device incorporating high-temperature superconductor toroidal field coil magnets capable of high neutron fluence and both tritium and electrical self-sufficiency is also presented following systematic aspect ratio studies.
DOI: 10.11578/1562059
title: Large-volume flux closure during plasmoid-mediated reconnection in coaxial helicity injection

description: A large-volume flux closure during transient coaxial helicity injection (CHI) in NSTX-Uis demonstrated through resistive magnetohydrodynamics (MHD) simulations. Severalmajor improvements, including the improved positioning of the divertor poloidal field coils, are projected to improve the CHI start-up phase in NSTX-U. Simulations in the NSTX-U configuration with constant in time coil currents show that with strong flux shaping the injected open field lines (injector flux) rapidly reconnect and form large volume of closed flux surfaces. This is achieved by driving parallel current in the injector flux coil and oppositely directed currents in the flux shaping coils to form a narrow injector flux footprint and push the injector flux into the vessel. As the helicity and plasma are injected into the device, the oppositely directed field lines in the injector region are forced to reconnect through a local Sweet–Parker type reconnection, or to spontaneously reconnect when the elongated current sheet becomes MHD unstable to form plasmoids. In these simulations for the first time, it is found that the closed flux is over 70% of the initial injector flux used to initiate the discharge. These results could work well for the application of transient CHI in devices that employ super conducting coils to generate and sustain the plasma equilibrium.
DOI: 10.11578/1562061
title: Application of Benchmarked Kinetic Resistive Wall Mode Stability Codes to ITER, Including Additional Physics

description: Leading resistive wall mode (RWM) stability codes MARS-K [Y. Liu, et al., Phys. Plasmas 15, 112503 (2008)] and MISK [B. Hu, et al., Phys. Plasmas 12, 057301 (2005)] have been previously benchmarked. The benchmarking has now been extended to include additional physics, and used to project the stability of ITER in a realistic operating space. Due to ITER's relatively low plasma rotation and collisionality, collisions and non-resonance rotational effects were both found to have little impact on stability, and these non-resonance rotational effects also will not self-consistently affect the ITER RWM eigenfunction. Resonances between thermal ions and electrons and the expected level of ITER toroidal rotation were found to be important to stability, as were alpha particles, which are not in rotational resonance. MISK calculations show that without alpha particles, ITER is projected to be unstable to the RWM, but the expected level of alphas is calculated to provide a sufficient level of stability.
DOI: 10.11578/1562062
title: Exploration of magnetic perturbation effects on advanced divertor configurations in NSTX-U

description: The control of divertor heat loads - both steady state and transient - remains a key challenge for the successful operation of ITER and FNSF. Magnetic perturbations provide a promising technique to control ELMs (transients), but understanding their detailed impact is difficult due to their symmetry breaking nature. One approach for reducing steady state heat loads are so called 'advanced divertors' which aim at optimizing the magnetic field configuration: the snowflake and the (super-)X-divertor. It is likely that both concepts - magnetic perturbations and advanced divertors - will have to work together, and we explore their interaction based on the NSTX-U setup. An overview of different divertor configurations under the impact of magnetic perturbations is presented, and the resulting impact on plasma edge transport is investigated with the EMC3-EIRENE code.Variations in size of the magnetic footprint of the perturbed separatrix are found, which is related to the level of flux expansion on the divertor target. Non-axisymmetric peaking of the heat flux related to the perturbed separatrix is found at the outer strike point, but only in locations where flux expansion is not too large.
DOI: 10.11578/1562064
title: ELM elimination with Li powder injection in EAST discharges using the tungsten upper divertor

description: We report the first successful use of lithium (Li) to eliminate edge-localized modes (ELMs) with tungsten divertor plasma-facing components in the EAST device. Li powder injected into the scrape-off layer of the tungsten upper divertor successfully eliminated ELMs for 3-5 sec in EAST. The ELM elimination became progressively more effective in consecutive discharges at constant lithium delivery rates, and the divertor D-alpha baseline emission was reduced, both signatures of improved wall conditioning. A modest decrease in stored energy and normalized energy confinement was also observed, but the confinement relative to H98 remained well above 1, extending the previous ELM elimination results via Li injection into the lower carbon divertor in EAST [J.S. Hu et al., Phys. Rev. Lett. 114 (2015) 055001]. These results can be compared with recent observations with lithium pellets in ASDEX-Upgrade that failed to mitigate ELMs [P.T. Lang et al., Nucl. Fusion 57 (2017) 016030], highlighting one comparative advantage of continuous powder injection for real-time ELM elimination.
DOI: 10.21227/4egy-9q82
title: Damage Detection and Characterisation in Composites using a Geometric Modification of the RAPID Algorithm

description: The dataset contains some tests which were performed over composite material samples, propagating Lamb waves using PZT transducers.
DOI: 10.6073/pasta/16a20fcbe6e1f6c53981407eab5812af
title: Soil disturbance cover data on 1m x 1m plots from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2015

description: This data package contains soil disturbance data from plots with various levels of herbivore exclusion on the Jornada Experimental Range. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at the grassland study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Because grazing cattle are excluded from the entire creosote site, only three replicate experimental blocks were randomly located there including a) all mammalian herbivores, including lagomorphs, and rodents, b) lagomorphs only, and c) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. Each year in spring and fall from 1995-2005, various forms of disturbances (human, rabbit, cow, antelope, rodent, etc) were measured by depth . After 2005, sampling frequency changed to every 5 years. This study is ongoing.
DOI: 10.6073/pasta/b22a6bdd36f6490f6732b18c2fa1362f
title: Leaf litter cover data on 1m x 1m plots from the long-term Small Mammal Exclusion Study (SMES) at Jornada Basin LTER, 1995-2015

description: This data package contains leaf litter cover data from plots with various levels of herbivore exclusion on the Jornada Experimental Range. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at the grassland study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Because grazing cattle are excluded from the entire creosote site, only three replicate experimental blocks were randomly located there including a) all mammalian herbivores, including lagomorphs, and rodents, b) lagomorphs only, and c) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. Each year in spring and fall from 1995-2005, the total percent cover of leaf litter in each quadrat was estimated by summing the percent of each 10 cm square within a quadrat (including 100 10-cm squares) containing leaf litter (See methods for a detailed explanation). After 2005, sampling frequency changed to every 5 years. This study is ongoing.
DOI: 10.11578/1562066
title: Time dependent analysis of visible helium line-ratios for electron temperature and density diagnostic using synthetic simulations on NSTX-U

description: Helium line-ratios for electron temperature (Te) and density (ne) plasma diagnostic in the Scrape-Off-Layer (SOL) and Edge regions of tokamaks are widely used. Due to their intensities and proximity of wavelengths, the singlet 667.8 and 728.1 nm, and triplet 706.5 nm visible lines have been typically preferred. Time- dependency of the triplet line (706.5 nm) has been previously analyzed in detail by including transient effects on line-ratios during gas-puff diagnostic applications. In this work, several line-ratio combinations within each of the two spin systems are analyzed with the purpose of eliminating transient effects to extend the application of this powerful diagnostic to high temporal resolution characterization of plasmas. The analysis is done using synthetic emission modeling and diagnostic for low electron density NSTX SOL plasma conditions for several visible lines. This analysis employs both quasi-static equilibrium and time-dependent models in order to evaluate transient effects of the atomic population levels that may affect the derived electron temperatures and densities as a helium gas-puff penetrates the plasma. Ratios between the most intense lines are usually preferred due to their higher signal to noise ratio. The analysis of a wider range of spectral lines will help to extend this powerful diagnostic to experiments where the wavelength range of the measured spectra may be constrained either by limitations of the spectrometer, or by other conflicting lines from different ions.
DOI: 10.11578/1562071
title: Initial operation of the NSTX-Upgrade real-time velocity diagnostic

description: A real-time velocity (RTV) diagnostic based on active charge-exchange recombination spectroscopy is now operational on the National Spherical Torus Experiment-Upgrade (NSTX-U) spherical torus (Menard et al 2012 Nucl. Fusion 52 083015). The system has been designed to supply plasma velocity data in real time to the NSTX-U plasma control system, as required for the implementation of toroidal rotation control. Measurements are available from four radii at a maximum sampling frequency of 5 kHz. Post-discharge analysis of RTV data provides additional information on ion temperature, toroidal velocity and density of carbon impurities. Examples of physics studies enabled by RTV measurements from initial operations of NSTX-U are discussed.
DOI: 10.11578/1562072
title: Massive Gas Injection Valve Development for NSTX-U

description: NSTX-U research will offer new insight by studying gas assimilation efficiencies for MGI injection from different poloidal locations using identical gas injection systems. In support of this activity, an electromagnetic MGI valve has been built and tested. The valve operates by repelling two conductive disks due to eddy currents induced on them by a rapidly changing magnetic field created by a pancake disk solenoid positioned beneath the circular disk attached to a piston. The current is driven in opposite directions in the two solenoids, which creates a cancelling torque when the valve is operated in an ambient magnetic field, as would be required in a tokamak installation. The valve does not use ferromagnetic materials. Results from the operation of the valve, including tests conducted in 1 T external magnetic fields, are described. The pressure rise in the test chamber is measured directly using a fast time response baratron gauge. At a plenum pressure of just 1.38 MPa (~200 psig), the valve injects 27 Pa.m^3 (~200 Torr.L) of nitrogen with a pressure rise time of 3 ms.
DOI: 10.11578/1562073
title: Compact steady-state tokamak performance dependence on magnet and core physics limits

description: Compact tokamak fusion reactors utilizing advanced high-temperature superconducting magnets for the toroidal field coils have received considerable recent attention due to the promise of more compact devices and more economical fusion energy development. Facilities with combined Fusion Nuclear Science (FNS) and Pilot Plant missions to provide both the nuclear environment needed to develop fusion materials and components while also potentially achieving sufficient fusion performance to generate modest net electrical power are considered. The performance of the tokamak fusion system is assessed using a range of core physics and toroidal field magnet performance constraints to better understand which parameters most strongly influence the achievable fusion performance.