cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.597wz2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ateles fusciceps fusciceps)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087133-240626123714530/datasets/export for details.
DOI: 10.25582/data.2023-08.2874488/2434721
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874089/2434722
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874037/2434723
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874287/2434724
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874058/2434725
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874558/2434726
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.amtaj8
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus granarius (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087135-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-08.2874878/2434727
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2873790/2434728
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2873838/2434729
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874053/2434730
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2873669/2434731
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2873538/2434732
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874011/2434733
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.wdm7zt
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Icuria Wieringa"
 ]
}

 The dataset includes 59 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087136-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-08.2873797/2434734
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.stpc92
title: Occurrence Download

description: A dataset containing 1198 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Gyrinus marinus Gyllenhal, 1808",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1198 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087137-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-08.2873556/2434735
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874247/2434736
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.kt6wtx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lagothrix flavicauda (Humboldt, 1812))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087138-240626123714530/datasets/export for details.
DOI: 10.25582/data.2023-08.2873473/2434737
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.cfehjd
title: Occurrence Download

description: A dataset containing 63011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Xiphorhynchus erythropygius (P.L.Sclater, 1860)"
 ]
}

 The dataset includes 63011 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087134-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-08.2874199/2434738
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874504/2434739
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2873640/2434740
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874811/2434741
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874099/2434742
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.p8gs9e
title: Occurrence Download

description: A dataset containing 240 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus granarius (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 240 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087139-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2023-08.2874163/2434743
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874581/2434744
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874115/2434745
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874238/2434746
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874313/2434747
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874731/2434748
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874136/2434749
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2874723/2434750
title: Data for EMSL Project 51287 from August 2023
DOI: 10.25582/data.2023-08.2875115/2434751
title: Data for EMSL Project 51287 from August 2023
DOI: 10.15468/dl.b478tf
title: Occurrence Download

description: A dataset containing 3788 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Gyrinus substriatus Stephens, 1829",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 3788 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087140-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.sk81k/19
title: Supplementary Figure S7

description: Ancestral range reconstructions for palms using BioGeoBEARS, the SUPERSMART dated phylogeny, and the bioregions defined in Fig. 5.
DOI: 10.5061/dryad.sk81k/21
title: Supplementary Figure S9

description: The long-term vision of SUPERSMART, including current and planned interactions with other initiatives during different analytical stages. “Global analyses”, when fully implemented, aims at providing continuously updating, dated phylogenies of all species with publicly available molecular sequences, and (in future versions) estimates of diversification and migration rates among and within a set of pre-defined GIS polygons (such as WWF’s realms and biomes). The results may be retrieved by other initiatives and will be deposited in data repositories. “User-defined analyses” are influenced by individual choices, including defined polygons (areas), taxa of interest, and fossil records. The user may also include data that are not yet published or are not public.
DOI: 10.5061/dryad.sk81k/22
title: Supplementary Table S1

description: Palm fossils and morphological justification for their placement in the Arecaceae phylogeny.
DOI: 10.5061/dryad.sk81k/23
title: Supplementary Table S2

description: Estimated mean crown ages in millions of years of major palm clade from SUPERSMART results as compared to previous studies.
DOI: 10.5061/dryad.sk81k/24
title: Supplementary Figure S8

description: Validation of the three-step phylogenetic inference process. Cladograms of the simulated tree (left) matched with the tree that was re-estimated from the synthetic dataset using SUPERSMART (right). Species present in both trees are connected by lines which are colour-coded by the subclades that the backbone tree was decomposed into. Branches in the re-estimated tree that form the backbone are coloured in red. Black lines represent genera that have less than three species. The plot was generated using the R package ‘ape’.
DOI: 10.5061/dryad.sk81k/25
title: Supplementary Figure S5

description: Comparison between the palm phylogeny produced by SUPERSMART (right) and that inferred in a previous study (Faurby, S., Eiserhardt, W.L., et al. 2016a, left), with crosses between phylogenies showing the placement of common species. The plot was generated using the R package ‘ape’.
DOI: 10.5061/dryad.ss553/1
title: C++ simulation program

description: Code to simulate populations with varying size in which self-fertilisation can evolve.
DOI: 10.5061/dryad.v51bv/1
title: Motivation of smallholder farmers to participate in citizen science

description: The data file provides the motivational factors for farmers to participate in citizen science. It is measured in Likert scales with the values 1 (“Not important at all”), 2 (“Not important”), 3 (“Neutral”), 4 (“Important”) and 5 (“Very important”).
DOI: 10.5061/dryad.11vf0/1
title: Docility data

description: Data including docility scores, trial number (scaled), day of the year (scaled), time of the day (0: AM; 1:PM), age (0:juveniles, 1: yearlings; 2:adults), year and individual identity
DOI: 10.5061/dryad.11vf0/2
title: Pedigree

description: Pruned pedigree including only individuals with docility data and their ancestors.
DOI: 10.5061/dryad.12n6v/1
title: Carryover effects supporting data

description: Data file
DOI: 10.5061/dryad.14811/10
title: BSP analyses log file Uo mtDNA

description: BSP analyses log file generated in BEAST for U. ornatus mtDNA sequence data.
DOI: 10.5061/dryad.14811/11
title: Parameter file for BSP U. graciosus

description: Parameter file for Bayesian Skyline Plot analyses of U. graciosus mtDNA sequence data in BEAST developed using BEAUti v1.8.2.
DOI: 10.5061/dryad.14811/12
title: BSP analyses log file U. graciosus

description: BSP analyses log file generated in BEAST for U. graciosus mtDNA sequence data.
DOI: 10.5061/dryad.14811/13
title: Table of BAYESASS output

description: Migration Rates estimated with BAYESASS for U. graciosus and U. ornatus with lowest Bayesian deviances. Each species is a separate tab.
DOI: 10.5061/dryad.14811/14
title: Scale trait descriptions

description: Descriptions of scale morphology traits.
DOI: 10.5061/dryad.14811/15
title: Descriminant Function of Morphology

description: SAS code and data input to develop discriminatory function for scale characters of U. graciosus and U. ornatus. Column labels match Table S8a descriptions.
DOI: 10.5061/dryad.14811/16
title: Lizard body size data

description: Body size data used to compare SVL of parental U. graciosus to heterospecific individuals and to analyze the relations of mass to SVL.
DOI: 10.5061/dryad.14811/8
title: Arlequin input U. graciosus mtDNA sequences

description: Arlequin input file for population genetic analyses of U. graciosus mtDNA sequences. Includes geographic structure.
DOI: 10.5061/dryad.14811/9
title: Parameter file for Bayesian Skyline Plot analyses U. ornatus

description: Parameter file for Bayesian Skyline Plot analyses of U. ornatus mtDNA sequence data in BEAST developed using BEAUti v1.8.2.
DOI: 10.5061/dryad.1b5t7/2
title: Arrhenatherum_elatius_GBS_5026loci_for_spagedi

description: SNP data (5026 loci, SPAGeDI format) for the eight populations of Arrhenatherum elatius included in the experiment.
DOI: 10.5061/dryad.1fp80/3
title: Ingroup Dataset

description: Fasta file as exported from STACKS software. This file includes sequences for all populations of Primula farinosa and was used for all subsequent molecular analysis except for the phylogenomic (RAxML) analysis.
DOI: 10.5061/dryad.1fp80/4
title: Outgroup Dataset

description: Fasta file as exported from STACKS software. This file includes sequences for all populations of Primula farinosa, P. frondosa, and P. exigua  and was used for the phylogenomic (RAxML) analysis.
DOI: 10.5061/dryad.1fp80/5
title: Allelic_Richness_Script

description: The python programm that was used for calculating the allelic richness and private allelic richness for each lineage of P. farinosa
DOI: 10.5061/dryad.1fp80/7
title: Supplementary Material

description: Figures S1-S3, Tables S1-S7
DOI: 10.5061/dryad.1r45h/2
title: Abrahamczyk_et_al_JEB_DataS2

description: Nectar sugar composition and concentration and pollinator group for each species newly analyzed for this study;  *Nectar samples  collected in the wild are highlighted (*);  Literature sources for published data analyzed in this study
DOI: 10.5061/dryad.2bv13/1
title: R script for statistical analyses

description: Annotated R script for completing statistical analyses as described in the publication (e.g. WGCNA, DAPC, etc).
DOI: 10.5061/dryad.2bv13/2
title: R script for plots

description: Annotated R script for obtaining gene lists from gene ontology enrichement analyses (completed using the GO_MWU package - https://github.com/z0on/GO_MWU) and plotting heatmaps.
DOI: 10.5061/dryad.2bv13/3
title: Coral Host Physiological Trait Data

description: .csv file of physiological trait data for coral host samples, used as input for the WGCNA R script.
DOI: 10.5061/dryad.2bv13/4
title: Gene Ontology Annotations for Porites astreoides transcriptome

description: .tab file of GO term annotations for isogroups in the Porites astreoides transcriptome. Used as input for the statistical and plots R scripts.
DOI: 10.5061/dryad.3019k/1
title: Biophysical Properties of Single Tumour Cells

description: The file is an Excel composed of five sheets which are named after five cell lines of H460, H446, A549, 95D and 95C, respectively. In each sheet of a specific cell type, there are nine columns which are cell number (column A), A1 kHz (column B), A100 kHz (column C), Linstantaneous (column D), Ltransitional (column E), Lelongation (column F), Cspecific membrane (column G), σconductivity (column H) and Einstantaneous (column I). In this file, each row represents the quantified biophysical parameters of a biological cell including A1 kHz, A100 kHz, Linstantaneous, Ltransitional, Lelongation, Cspecific membrane, σconductivity and Einstantaneous.
DOI: 10.5061/dryad.3r1v5/1
title: Supporting info S7: Data and Matlab/R code

description: This folder contains the Matlab files used to run the GMDP and create the figures in the paper. 
It also contains the R code required to parameterise the likelihood function and the R code for drawing the classification trees. Occupancy data for RFBE and Gambusia are contained in the excel file 'Edgbaston Presence Data.xlsx'. See the included readme file for details of the code.
DOI: 10.5061/dryad.3r1v5/2
title: Supplementary information S1-S6

description: This file contains supplementary information S1-S6 referred to in the main text of the manuscript. File format is Microsoft Word (docx).
DOI: 10.5061/dryad.3r8n6/1
title: Data for Jutfelt et al. Figure 7

description: Figure 7.Side preferences (1 min means) of two humbug damselfish (Dascyllus aruanus) over time. The first 38 minutes in the flume are without cue (note the different side preferences in the two individuals), then 20 minutes with a predator cue down one side of the flume (side A), and finally a side switch at 58 minutes before another 20 minutes with the predator cue down the opposite side (side B). The grey shaded areas indicate the side of the flume containing predator cue.
DOI: 10.5061/dryad.4kp7s/1
title: Complete experimental and qPCR data
DOI: 10.5061/dryad.4pr3r/1
title: carp positions

description: The file 'carp positions' contains the telemetry data for all carp recorded by a high resolution whole lake acoustic telemetry system from tags with a burst rate of 5 seconds. The file includes the time stamps of each position, the UTM x and y coordinates for each position, the fish depth and temperature from the sensor in the transmitter, lake depth at the carp's position, and macrophyte height at the carp's position
DOI: 10.5061/dryad.4pr3r/2
title: tench positions

description: The file 'tench positions' contains the telemetry data for all tench recorded by a high resolution whole lake acoustic telemetry system from tags with a burst rate of 35 seconds. The file includes the time stamps of each position, the UTM x and y coordinates for each position, the fish depth and temperature from the sensor in the transmitter, lake depth at the carp's position, and macrophyte height at the carp's position
DOI: 10.5061/dryad.4pr3r/3
title: tench metadata

description: The "tench metadata" file contains size, waterbody source, date of tagging/release and surgery details for each tagged tench used in the experiment.
DOI: 10.5061/dryad.4pr3r/4
title: carp meta data

description: The "carp metadata" file contains size, fat meter readings (three per side), date of tagging/release and surgery details for each tagged tench used in the experiment.
DOI: 10.5061/dryad.4pr3r/5
title: telemetry fish capture data

description: the "telemetry fish capture data" file contains information about all telemetry fish that were captured during the angling phase of the experiment. The file includes size at capture, location of capture, time of capture, the angler who captured the fish and the bait the fish was captured with.
DOI: 10.5061/dryad.6bg56/1
title: points

description: The CO2 compensation points for each genotype at each temperature and generation of the experiment. Any genotype with an n is from Nicosia and genotypes with s are from Folsom Lake
DOI: 10.5061/dryad.7c57r/6
title: Ruaha dry season 2014 camera trap location covariates

description: Variables recorded for each camera location and used to model species co-occurrence in Ruaha NP during the dry season of 2014. The file includes the camera trap location name (Station), the elevation (Altitude), an index of vegetation density (VegDens), an encounter rate for lion prey (LionPrey), and encounter rate for spotted hyaena prey (HyenaPrey), and the distance to the Great Ruaha River (Dist2Water).
DOI: 10.5061/dryad.831g1/3
title: Control Region (mtDNA) sequence alignment

description: Aligned sequences of the mtDNA Control Region, including indels, for 84 individuals of Acropora from Western Australia. Sequence length ~1255 bp. File is in FASTA format.
DOI: 10.5061/dryad.85096/1
title: Data pest and biological control
DOI: 10.5061/dryad.8976q/1
title: Genotypic Data
DOI: 10.5061/dryad.8976q/2
title: Phenotypic Data
DOI: 10.5061/dryad.8mv2j/1
title: Chipping sparrow song means
DOI: 10.5061/dryad.9kp7d/7
title: Supplemental Data Set 7

description: Multiple alignment of AG/STK used for ancestral protein reconstruction.
DOI: 10.5061/dryad.9kp7d/8
title: Supplemental Data Set 8

description: Multiple alignment of SEP3/SEP1 used for ancestral protein reconstruction.
DOI: 10.5061/dryad.d4j55.1
title: Data from: An integrated model of phenotypic trait changes and site-specific sequence evolution
DOI: 10.5061/dryad.d4j55.1/7.1
title: SuppMaterial_TraitRateProp
DOI: 10.5061/dryad.d4j55.2
title: Data from: An integrated model of phenotypic trait changes and site-specific sequence evolution
DOI: 10.5061/dryad.d4j55.2/2.2
title: SuppTable_S1
DOI: 10.5061/dryad.d4j55.2/4.2
title: TRP_on_orchid_genes
DOI: 10.5061/dryad.d4j55.2/5.2
title: TRP_on_OM_genes
DOI: 10.5061/dryad.d4j55.2/6.2
title: SuppTable_S2
DOI: 10.5061/dryad.d4j55.2/7.2
title: SuppMaterial_TraitRateProp
DOI: 10.5061/dryad.dv413.1
title: Data from: Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis
DOI: 10.5061/dryad.dv413.2
title: Data from: Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis
DOI: 10.5061/dryad.dv413.2/1.2
title: Phenotype data

description: Phenotype data for 274 half-sib families used in association analysis (except entries 137,161,196; see Gibbs sampler file). Includes the following columns:
    a. TREE: identifier for individual mother trees
    b. METLA: alternative identifier
    c. POP: population identifier
    d. BUDSET: BLUP-estimate of breeding value of TREE (from mixed model)
    e. LATITUDE: latitude of origin
    f. POPMEAN: estimate of population mean (from mixed model).
DOI: 10.5061/dryad.dv413.2/2.2
title: Genotype scores

description: Corrected genotype scores (see manuscript for details) for 271 half-sib families in 351 SNPs. 271 entries are in same order as in phenotype data file (with entries 137, 161 and 196 missing).
DOI: 10.5061/dryad.dv413.2/3.2
title: R script for MCMC simulation

description: R script to run MCMC simulation for the association analysis.
DOI: 10.5061/dryad.dv413.2/4.2
title: Gibbs sampler

description: Gibbs sampler in a C-language module implemented as an extension to R.
DOI: 10.5061/dryad.dv413.2/5.2
title: Dynamic link library

description: The module above (Gibbs sampler) compiled as a dynamic link library (As this is platform-specific, the above module may have to be compiled again. See R documentation for how to do this).
DOI: 10.5061/dryad.dv413.2/6.2
title: R script for permutation