cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8259203.v1
title: Analysis of the compressive strength of concrete with addition of ash from landfill

description: ABSTRACT The objective of this work is to identify the behavior of some traces of concrete in which there is the partial replacement of the natural sand by the landfill ash. Four traces were proposed, the first one with 100% natural sand, which will be used as reference traces, the second with 5% ash from the landfill, in relation to the natural sand mass, the third with 10% ash, the room with 15% ash. The traces of the concretes were composed of cement, sand / ash, gravel and water, and these were tested for their compressive strength. The results showed that the composite traces with ash showed good performance with respect to the compressive strength. The relevance of this study is due to the fact that landfills, when used the process of burning the garbage, produce ashes, causing an impact on nature that generates an important environmental liability. Therefore, the use of this type of waste makes it possible to reduce this environmental impact.
DOI: 10.6084/m9.figshare.8259218.v1
title: Wood-decay fungi (Agaricomycetes, Basidiomycota) in three physiognomies in the Savannah region in Brazil

description: ABSTRACT This study was carried out aiming at determining whether the following factors are related to the diversity of wood-decay fungi: cerrado physiognomies, vegetation diversity (availability of substrates), preservation status of the area and its management backgrounds, and the existence of rivers nearby (humidity). 796 specimens were collected in four areas: one in the cerrado sensu stricto, one in the semi-deciduous forest and two in the riparian forest (one more preserved and the other less preserved). A total of 92 species of fungi were identified. Eleven species are common in the four areas sampled and 30 species occurred only once during the two-year sampling. Higher richness and abundance were observed in the more preserved area of riparian forest. This study showed that in the same macroclimate, the Agaricomycetes diversity is influenced by the vegetation’s physiognomy and diversity related to the soil characteristics, humidity, and conservation level of the area.
DOI: 10.6084/m9.figshare.8259200
title: Relationship between the normalized difference vegetation index and leaf area in vineyards

description: ABSTRACT In vineyards, the monitoring of leaf area is used to guide management practices in order to produce grapes with quality and enological potential. Remote sensing has been used to estimate leaf area by means of vegetation indices. This work aimed at determining the temporal evolution of the Normalized Difference Vegetation Index (NDVI) while associating it with leaf area of vineyards in the Serra Gaúcha region, Brazil. To this end, between 10 and 20 plants were evaluated monthly (September to May) in three vegetative seasons. NDVI data were obtained using the remote sensor Greenseeker while the following leaf area related parameters were obtained non-destructively: unit leaf area (ULA), average number of leaves per branch (NLB), plant leaf area (PLA), leaf area index (LAI) and chlorophyll index (CI). Data correlation was assessed by joint temporal analysis and Pearson correlations (p &lt; 0.05). The results indicated that NDVI variation over time is coherent with the leaf area dynamics and expresses biomass variations due to phenology and management actions. The NDVI evolution pattern is described by a quadratic regression equation: the index increases rapidly at first (September to November), followed by a relative stabilization (December to February), and decreases in the final stage (March to May). The correlations were higher in the initial and final stages of the cycle, especially for NLB (r = 0.73 and 0.77), PLA (r = 0.60 and 0.61) and CI (r = 0.48 and 0.84), which are promising parameters for characterizing leaf area in vineyards by remote sensing.
DOI: 10.6084/m9.figshare.8259209.v1
title: Evaluation of two point-of-care tests to diagnosis of FIV and FeLV infections

description: ABSTRACT FIV and FeLV are Retrovirus associated mainly with feline neoplasms. Two point-of-care tests are commercially available in Brazil for diagnosis of these infections: a bidirectional flow immunochromatography kit (IDEXX SNAP ® Combo) and a lateral unidirectional flow immunochromatography kit (ALERE/BIONOTE Anigen Rapid). The aim of this study was to compare SNAP ® and ALERE tests. Blood samples obtained from 178 cats were evaluated using both tests. Quantitative real-time polymerase chain reaction (qPCR) was used as confirmatory test for all samples. The sensitivity and specificity of SNAP ® test was 100% for FIV, and for ALERE test was 96.15% and 98.68%, respectively. The sensitivity and specificity for FeLV was 93.02% and 96.30% for SNAP ® test and 90.70% and 97.78% for ALERE test. Three samples with a qPCR positive result for FeLV obtained a false negative result in both SNAP ® and ALERE tests. There was no statistically significant difference between the two methods. Considering qPCR as gold standard method, the SNAP® test showed higher sensitivity and specificity for FIV, and the ALERE test presented higher specificity for FeLV. The results showed good agreement among the tests.
DOI: 10.6084/m9.figshare.8259200.v1
title: Relationship between the normalized difference vegetation index and leaf area in vineyards

description: ABSTRACT In vineyards, the monitoring of leaf area is used to guide management practices in order to produce grapes with quality and enological potential. Remote sensing has been used to estimate leaf area by means of vegetation indices. This work aimed at determining the temporal evolution of the Normalized Difference Vegetation Index (NDVI) while associating it with leaf area of vineyards in the Serra Gaúcha region, Brazil. To this end, between 10 and 20 plants were evaluated monthly (September to May) in three vegetative seasons. NDVI data were obtained using the remote sensor Greenseeker while the following leaf area related parameters were obtained non-destructively: unit leaf area (ULA), average number of leaves per branch (NLB), plant leaf area (PLA), leaf area index (LAI) and chlorophyll index (CI). Data correlation was assessed by joint temporal analysis and Pearson correlations (p &lt; 0.05). The results indicated that NDVI variation over time is coherent with the leaf area dynamics and expresses biomass variations due to phenology and management actions. The NDVI evolution pattern is described by a quadratic regression equation: the index increases rapidly at first (September to November), followed by a relative stabilization (December to February), and decreases in the final stage (March to May). The correlations were higher in the initial and final stages of the cycle, especially for NLB (r = 0.73 and 0.77), PLA (r = 0.60 and 0.61) and CI (r = 0.48 and 0.84), which are promising parameters for characterizing leaf area in vineyards by remote sensing.
DOI: 10.6084/m9.figshare.8259179
title: Result of Molecular Docking

description: The data upload in this repository is the data get from the in silico experiment
DOI: 10.6084/m9.figshare.8259197
title: Organizational donation in the face of organ market: an analysis of Brazilian transplant model

description: Abstract Organizational donation is the model of economic coordination of organ transplantation in Brazil. The objective of this study is to evaluate the performance of the National Transplant System to increase the number of donors and, consequently, to reduce the moral challenge imputed due to the existence of the waiting list. The methodology followed the qualitative approach with documentary analysis of laws, ordinances, available technical standards. The analysis showed that the System operates with three strategies: a) creation of an "incentive economy"; b) legal and managerial structuring of the system in an organizational continuum; c) stimulus to altruism as the basis of the model of social solidarity. In the critical balance of these strategies, the study suggests the change of the legislation regarding informed consent and the reorganization of the system to promote the action of the in-hospital commissions and optimization of the transport logistics of the organs.
DOI: 10.6084/m9.figshare.8259197.v1
title: Organizational donation in the face of organ market: an analysis of Brazilian transplant model

description: Abstract Organizational donation is the model of economic coordination of organ transplantation in Brazil. The objective of this study is to evaluate the performance of the National Transplant System to increase the number of donors and, consequently, to reduce the moral challenge imputed due to the existence of the waiting list. The methodology followed the qualitative approach with documentary analysis of laws, ordinances, available technical standards. The analysis showed that the System operates with three strategies: a) creation of an "incentive economy"; b) legal and managerial structuring of the system in an organizational continuum; c) stimulus to altruism as the basis of the model of social solidarity. In the critical balance of these strategies, the study suggests the change of the legislation regarding informed consent and the reorganization of the system to promote the action of the in-hospital commissions and optimization of the transport logistics of the organs.
DOI: 10.6084/m9.figshare.8259134
title: SMSNet's predictions for HLA peptidome and human phosphoproteome datasets

description: SMSNet's predicted amino acid sequences for a public HLA peptidome dataset (MassIVE accession MSV000080527) and human phosphoproteome dataset (PRIDE accession PXD009227). For the human phosphoproteome dataset, both SMSNet's original output and the evidence output from MaxQuant after re-searching with additional peptides from SMSNet are provided.
DOI: 10.6084/m9.figshare.8259122
title: SMSNet's trained models

description: Two models for SMSNet are provided here. The "m" model was trained on WCU-MS-M dataset which contains 22.6 million MS/MS spectra acquired on Q Exactive mass spectrometers at the Proteomics and Metabolomics Core Facility, The Wistar Institute. This model allows SMSNet to predict 20 unmodified amino acids and oxidized form of Methionine. The "p" model was trained on WCU-MS-P dataset which contains 24.5 million MS/MS spectra (22.6 million in WCU-MS-M plus additional spectra of phosphorylated peptides). This model allows SMSNet to predict 20 unmodified amino acids, oxidized Methionine, and phosphorylated Serine, Threonine, and Tyrosine.
DOI: 10.6084/m9.figshare.8259098
title: EarthPy Vignette Data | DEM from the Boulder Flood Teaching Subset

description: A digital elevation model for the earthpy vignette datasets<br>
DOI: 10.6084/m9.figshare.8259098.v2
title: EarthPy Vignette Data | DEM from the Boulder Flood Teaching Subset

description: A digital elevation model for the earthpy vignette datasets<br>
DOI: 10.6084/m9.figshare.8259098.v1
title: EarthPy Vignette Data | DEM from the Boulder Flood Teaching Subset

description: A digital elevation model for the earthpy vignette datasets<br>
DOI: 10.6084/m9.figshare.8259017
title: Raw data for SutA analysis

description: Raw gel image files (source_data.zip) and NMR data for full length (SutA_700_20180531.zip) and truncated (truncated_SutA...) SutA supporting <br><em>"</em>The dormancy-specific regulator SutA is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa"<br><em></em><b> </b>
DOI: 10.6084/m9.figshare.8259017.v1
title: Raw data for SutA analysis

description: Raw gel image files (source_data.zip) and NMR data for full length (SutA_700_20180531.zip) and truncated (truncated_SutA...) SutA supporting <br><em>"</em>The dormancy-specific regulator SutA is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa"<br><em></em><b> </b>
DOI: 10.6084/m9.figshare.8258810
title: ___

description: Is attached the Enviromics dataset:<b>- File S1</b>: ENV markers, containing 10,000 pixels and 100 climate and landscape-based environmental attributes;<b>- File S2</b>: phenotypes of 5,000 experimental plots. Addressing 100 unrelated genotypes and 50 experimental trials.
DOI: 10.6084/m9.figshare.8258861
title: CCDB_7306.jpg

description: Coronal slice of a mouse brain stained with Fluoromyelin(green), DiI(red), and TO-PRO3(blue) which stain for myelin, blood vessels, and cells respectively
DOI: 10.6084/m9.figshare.8258810.v1
title: Enviromics_data

description: Is attached the Enviromics dataset:<b>- File S1</b>: ENV markers, containing 10,000 pixels and 100 climate and landscape-based environmental attributes;<b>- File S2</b>: phenotypes of 5,000 experimental plots. Addressing 100 unrelated genotypes and 50 experimental trials.
DOI: 10.6084/m9.figshare.8258795
title: Swartz and Miller_2019_Managing farm ponds as breeding sites for amphibians_Ecological Applications

description: Metadata for raw data used for analyses in: T. M. Swartz and J. R. Miller. 2019. Managing farm ponds as breeding sites for amphibians: key trade-offs in agricultural function and habitat conservation. Ecological Applications.Files:1. DataS1_unmarkedAnalyses.csv2. DataS2_Chronosequence_Analysis.csvDescriptions:File 1: DataS1_unmarkedAnalyses.csv • contains all data used to perform the single season ocucpancy analyses described in the manuscript: Swartz and Miller (2019) Managing farm ponds • PondID: represents the coded name given to each pond (site)• Amphibian species: names are abbreviated as follows:  HYLA: Hyla chrysoscelis/versicolor (Cope's/Eastern gray treefrog)  ACBL: Acris blanchardi (Blanchard's cricket frog)  LIBL: Lithobates blairi (Plains leopard frog)  LICA: Lithobates catesbeianus (American bullfrog) o In all cases, the year being analyzed is denoted as either "16" or "17", and the number of sites included is denoted with "51" o For each species, there are 8 columns containing a "1", "0", or "NA", to signify whether the species was present, absent, or no surveys were performed during the 8 sampling occasions (four in each year). o The sampling occasions are denoted as the 3rd number in the column headings for the amphibian species.• Habitat variables, the following abbreviations are used in the column headings: o FL= Floating vegetation percent cover o EM= Emergent vegetation percent cover o AQ= submerged/aquatic vegetation percent cover o LogArea= log-transformed area of each pond (in meteres^2) o cattle= presence or absence of cattle around the pond o Fish= presence or absence of fish in the pond• Detection Covariates: o Columns containing "J", "Temp", or "T", represent Julian date, Mean daily temperature, or sampling occasion number, respectively, followed by the year ("16" or "17", where applicable) and the sampling occasion number.<br>File 2: DataS2_Chronosequence_Analysis.csv• contains all data used to perform the chronosequence analyses described in the manuscript. o PondID: represents the coded name given to each pond (site)• Habitat variables, the following abbreviations are used in the column headings:  FL= Floating vegetation percent cover  EM= Emergent vegetation percent cover  AQ= submerged/aquatic vegetation percent cover  LogArea= log-transformed area of each pond (in meteres^2)  cattle= presence or absence of cattle around the pond o For each variable, the year of the measurement was taken is noted as either a "1617" to indicate that measurements from 2016 and 2017 were averaged for this comparison. pH, was only measured in 2017 so no year is listed.<br>
DOI: 10.6084/m9.figshare.8258792
title: 1 Raw data

description: Raw and processed images analyzed in LUMoS spectral unmixing paper.<br><br>
DOI: 10.6084/m9.figshare.8258783
title: CCDB_7303.jpg

description: Coronal mouse brain slice containing stains of Fluoromyelin(green), DiI(red), and TO-PRO3(blue) which stain for myelin, blood vessels, and cells respectively
DOI: 10.6084/m9.figshare.8258792.v1
title: Raw image data for LUMoS paper

description: Raw and processed images analyzed in LUMoS spectral unmixing paper.
DOI: 10.6084/m9.figshare.8258747
title: vary tm

description: Simulated gene trees and alignments used to explore effects of the timing of introgression on the D3 statistic.
DOI: 10.6084/m9.figshare.8258747.v1
title: vary tm

description: Simulated gene trees and alignments used to explore effects of the timing of introgression on the D3 statistic.
DOI: 10.6084/m9.figshare.8258792.v2
title: Raw data

description: Raw and processed images analyzed in LUMoS spectral unmixing paper.
DOI: 10.6084/m9.figshare.8258726
title: vary t1

description: Simulated gene trees and alignments with different values of t1, to explore the effects on the D3 statistic.
DOI: 10.6084/m9.figshare.8258792.v3
title: 1 Raw data

description: Raw and processed images analyzed in LUMoS spectral unmixing paper.<br><br>
DOI: 10.6084/m9.figshare.8258702
title: vary_Ne

description: Simulated gene trees and alignments, with inter-locus variation in theta.
DOI: 10.6084/m9.figshare.8258726.v1
title: vary t1

description: Simulated gene trees and alignments with different values of t1, to explore the effects on the D3 statistic.
DOI: 10.6084/m9.figshare.8258693
title: fewer sites

description: Simulated gene trees and alignments with 100kb of sequence rather than 1 MB, for investing the effect of the # of sites on the power of D3.
DOI: 10.6084/m9.figshare.8258636
title: Predicted habitat use within a home range for an endangered lizard species at Carrizo Plain National Monument

description: The 95% maximum convex polygon (MCP) for all points was calculate using the R package 'adehabitat'. Resource selection function models were applied to these data. Individual telemetry relocations that fell within the 95% MCP were classified as 'used' locations and 'unused' habitat was randomly selected also within the home range for subsequent resource selection models. Models were iterated 99 times, and mean probabilities for the model set were then converted to binary data using a 0.5 threshold. All models were also retested using the R package 'ResourceSelection' to ensure estimate probabilities were robust. All analyses were done in R version 3.6.0, and the code is publicly archived at zenodo (DOI: 10.5281/zenodo.3240619).
DOI: 10.6084/m9.figshare.8258693.v1
title: fewer sites

description: Simulated gene trees and alignments with 100kb of sequence rather than 1 MB, for investing the effect of the # of sites on the power of D3.
DOI: 10.6084/m9.figshare.8258702.v1
title: vary_Ne

description: Simulated gene trees and alignments, with inter-locus variation in theta.
DOI: 10.6084/m9.figshare.8258615
title: main

description: Simulated gene trees and alignments used for the main results figure comparing D to D3.
DOI: 10.6084/m9.figshare.8258627
title: big_theta

description: Simulated gene trees and alignments, using a much larger value of theta (2 vs. 0.01 in main).
DOI: 10.6084/m9.figshare.8258636.v1
title: Predicted habitat use within a home range for an endangered lizard species at Carrizo Plain National Monument

description: The 95% maximum convex polygon (MCP) for all points was calculate using the R package 'adehabitat'. Resource selection function models were applied to these data. Individual telemetry relocations that fell within the 95% MCP were classified as 'used' locations and 'unused' habitat was randomly selected also within the home range for subsequent resource selection models. Models were iterated 99 times, and mean probabilities for the model set were then converted to binary data using a 0.5 threshold. All models were also retested using the R package 'ResourceSelection' to ensure estimate probabilities were robust. All analyses were done in R version 3.6.0, and the code is publicly archived at zenodo (DOI: 10.5281/zenodo.3240619).
DOI: 10.6084/m9.figshare.8258627.v1
title: big_theta

description: Simulated gene trees and alignments, using a much larger value of theta (2 vs. 0.01 in main).
DOI: 10.6084/m9.figshare.8257166
title: “I'm not the anti-smoker now. I just don't smoke anymore”: social obstacles to quitting smoking among emerging adults

description: <b>Background:</b> Emerging adulthood presents unique challenges to smoking cessation that are not well understood. During this phase, smoking identities can develop that become obstacles for quitting, particularly in social situations where smoking is accepted and expected. Using a social identity approach, this study explores how social relationships and normative group behaviours can be barriers to transitioning from a smoker to non-smoker identity. <b>Method:</b> Six focus groups of five participants (<i>N</i> = 30) were conducted with participants aged 18-25 years (57% male). Participants’ smoking status was ascertained to construct six groups, two each of daily smokers, occasional (non-daily) smokers, and ex-smokers. <b>Results:</b> Salient in-group identities invoked out-group comparisons that could create barriers to change including feeling conflicted about becoming a “non-smoker”, and maintenance of pro-smoking group norms. Three subthemes were identified: 1) Managing the division between smoker and non-smoker groups; 2) The isolation associated with navigating others’ expectations about quitting when attempting to quit; and 3) Encountering normative in-group smoking-related behaviours when attempting to quit. <b>Conclusions:</b> The transition from smoker to non-smoker, when understood from a social identity approach, is not straightforward. Identifying as a smoker can invoke negative judgements from non-smokers while, conversely, attempting to quit may lead to perceived rejection among smokers. Further research is needed to explore whether perceptions of social risk can be reduced by increasing the salience of a transitional “quitter” identity that helps to reduce the perceived gap between “smoker” and “non-smoker”.
DOI: 10.6084/m9.figshare.8257166.v1
title: “I'm not the anti-smoker now. I just don't smoke anymore”: social obstacles to quitting smoking among emerging adults

description: <b>Background:</b> Emerging adulthood presents unique challenges to smoking cessation that are not well understood. During this phase, smoking identities can develop that become obstacles for quitting, particularly in social situations where smoking is accepted and expected. Using a social identity approach, this study explores how social relationships and normative group behaviours can be barriers to transitioning from a smoker to non-smoker identity. <b>Method:</b> Six focus groups of five participants (<i>N</i> = 30) were conducted with participants aged 18-25 years (57% male). Participants’ smoking status was ascertained to construct six groups, two each of daily smokers, occasional (non-daily) smokers, and ex-smokers. <b>Results:</b> Salient in-group identities invoked out-group comparisons that could create barriers to change including feeling conflicted about becoming a “non-smoker”, and maintenance of pro-smoking group norms. Three subthemes were identified: 1) Managing the division between smoker and non-smoker groups; 2) The isolation associated with navigating others’ expectations about quitting when attempting to quit; and 3) Encountering normative in-group smoking-related behaviours when attempting to quit. <b>Conclusions:</b> The transition from smoker to non-smoker, when understood from a social identity approach, is not straightforward. Identifying as a smoker can invoke negative judgements from non-smokers while, conversely, attempting to quit may lead to perceived rejection among smokers. Further research is needed to explore whether perceptions of social risk can be reduced by increasing the salience of a transitional “quitter” identity that helps to reduce the perceived gap between “smoker” and “non-smoker”.
DOI: 10.6084/m9.figshare.8257097
title: Anger in Lineup Identification and Creation Data

description: Data used in the anger in lineup identification and creation experiments.