cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24435/materialscloud:8h-vq
title: Unveiling the pH-dependent structure-activity relationship of Co-based catalysts toward oxygen evolution reaction

description: Co-based catalysts are promising candidates to replace the Ir/Ru-based oxides for the oxygen evolution reaction (OER) in an acidic environment. However, both the reaction mechanism and the active species in an acidic environment remain unclear. In this study, by combining surface-sensitive soft X-ray adsorption spectroscopy (sXAS) characterization with electrochemical analysis, we unveil the truly active Co species for acidic OER. Surfaces composed of only high-spin CoII are found to be not active due to their unfavorable deprotonation to form CoIII-OH species. In contrast, we show that the presence of low-spin CoIII is essential to promote surface reconstruction and catalysis of OER. The correlation between OER activity and Co oxidation/spin state represents a breakthrough in the structure-activity relationship of Co-based catalysts for acidic OER, which interestingly does not hold in the alkaline and neutral environments. These findings not only help to design efficient acidic OER catalysts, but also deepen the understanding of the reaction mechanism.
DOI: 10.24435/materialscloud:qf-c9
title: Influence of the triangular Mn-O breathing mode on magnetic ordering in multiferroic hexagonal manganites

description: We use a combination of symmetry analysis, phenomenological modeling, and first-principles density functional theory to explore the interplay between the magnetic ground state and the detailed atomic structure in the hexagonal rare-earth manganites. We find that the magnetic ordering is sensitive to a breathing mode distortion of the Mn and O ions in the ab plane, which is described by the K1 mode of the high-symmetry structure. Our density functional calculations of the magnetic interactions indicate that this mode particularly affects the single-ion anisotropy and the interplanar symmetric exchanges. By extracting the parameters of a magnetic model Hamiltonian from our first-principles results, we develop a phase diagram to describe the magnetic structure as a function of the anisotropy and exchange interactions. This in turn allows us to explain the dependence of the magnetic ground state on the identity of the rare-earth ion and on the K1 mode.
The attached files contain VASP input files and bash scripts for running all the DFT calculations in the manuscript.
DOI: 10.24435/materialscloud:gj-s9
title: Influence of the triangular Mn-O breathing mode on magnetic ordering in multiferroic hexagonal manganites

description: We use a combination of symmetry analysis, phenomenological modeling, and first-principles density functional theory to explore the interplay between the magnetic ground state and the detailed atomic structure in the hexagonal rare-earth manganites. We find that the magnetic ordering is sensitive to a breathing mode distortion of the Mn and O ions in the ab plane, which is described by the K1 mode of the high-symmetry structure. Our density functional calculations of the magnetic interactions indicate that this mode particularly affects the single-ion anisotropy and the interplanar symmetric exchanges. By extracting the parameters of a magnetic model Hamiltonian from our first-principles results, we develop a phase diagram to describe the magnetic structure as a function of the anisotropy and exchange interactions. This in turn allows us to explain the dependence of the magnetic ground state on the identity of the rare-earth ion and on the K1 mode.
The attached files contain VASP input files and bash scripts for running all the DFT calculations in the manuscript.
DOI: 10.24435/materialscloud:r1-e1
title: A nanotwinned-alloy strategy enables fast sodium deposition dynamics

description: Sodium (Na) metal batteries are considered promising solutions for next-generation electrochemical energy storage because of their low costs and high energy densities. However, the slow Na dynamics result in unfavourable Na deposition and dendrite growth, which compromise cycling performance. Here we propose a nanotwinned alloy strategy prepared by high-pressure solid solution followed by Joule-heating treatment to address sluggish Na dynamics, achieving homogeneous Na deposition. By employing cost-effective Al-Si alloys for validation, Si solubility of 10 wt.% is extended through a high-pressure solid solution, and nanotwinned-Si particles, with a volume fraction of 82.7%, are subsequently formed through Joule-heating treatment. The sodiophilic nanotwinned-Si sites exhibit a high diffusion rate, which reduces the nondimensional electrochemical Damköhler number to far below 1, shifting the diffusion-controlled deposition behavior to reaction-controlled deposition. This transition facilitates spherical Na deposition and dendrite-free growth, allowing a symmetric cell to achieve stable Na plating/stripping over 5300 hours at 5 mA cm⁻² with a cumulative capacity of 13.25 Ah cm⁻². This strategy is also demonstrated in another CuAg system with nanotwinned Ag structures.The record contains data that support the findings described in the publication.
DOI: 10.24435/materialscloud:1f-4c
title: A nanotwinned-alloy strategy enables fast sodium deposition dynamics

description: Sodium (Na) metal batteries are considered promising solutions for next-generation electrochemical energy storage because of their low costs and high energy densities. However, the slow Na dynamics result in unfavourable Na deposition and dendrite growth, which compromise cycling performance. Here we propose a nanotwinned alloy strategy prepared by high-pressure solid solution followed by Joule-heating treatment to address sluggish Na dynamics, achieving homogeneous Na deposition. By employing cost-effective Al-Si alloys for validation, Si solubility of 10 wt.% is extended through a high-pressure solid solution, and nanotwinned-Si particles, with a volume fraction of 82.7%, are subsequently formed through Joule-heating treatment. The sodiophilic nanotwinned-Si sites exhibit a high diffusion rate, which reduces the nondimensional electrochemical Damköhler number to far below 1, shifting the diffusion-controlled deposition behavior to reaction-controlled deposition. This transition facilitates spherical Na deposition and dendrite-free growth, allowing a symmetric cell to achieve stable Na plating/stripping over 5300 hours at 5 mA cm⁻² with a cumulative capacity of 13.25 Ah cm⁻². This strategy is also demonstrated in another CuAg system with nanotwinned Ag structures.The record contains data that support the findings described in the publication.
DOI: 10.24435/materialscloud:ps-nw
title: Density functional theory study of silicon nanowires functionalized by grafting organic molecules

description: Functionalizing Silicon Nanowires (SiNWs) through covalent attachment of organic molecules offers diverse advantages, including surface passivation, introduction of new functionalities, and enhanced material performance in applications like electronic devices and biosensors. Given the wide range of available functional molecules, systematic large-scale screening is crucial. Therefore, we developed an automated computational workflow using Python scripts in conjunction with the AiiDa framework to explore structural configurations of functional molecules adsorbed onto silicon surfaces. This workflow generates multiple adhesion configurations corresponding to different binding orientations using surface and functional molecule structures as inputs.  
This dataset contains data related to the structural optimization of molecules with single, double, and triple carbon-carbon bonds attached to the nanowire surface in various adhesion configurations. We describe the chemisorption on SiNWs using the slab models for the Si facets since our reference are samples with diameters of SiNWs around 50 nm, while the quantum confinement effects are important for diameters below 10 nm.  For each configuration, structural characterization was conducted by calculating quantities including the bond distance between the two carbons closest to the surface and their respective bond angle relative to the z-axis, the carbon-silicon bond distance and its respective bond angle relative to the z-axis, along with the molecule's rotation angle in the xy plane. The values obtained are summarized in the main folder. The version v1 of dataset contains data related to the Si(111) surface and alkanes, alkenes, and alkynes with lengths from C2 to C10. This version (v2) extends the dataset to moieties from C12 to C18. The dataset will be extended to characterize the Si(110) surface of the nanowire. For each system the most stable configuration will be identified, and the analysis of the electronic properties will be conducted.
DOI: 10.24435/materialscloud:9b-5n
title: Internal consistency of multi-tier GW+EDMFT

description: The multi-tier GW+EDMFT scheme is an ab-initio method for calculating the electronic structure of correlated materials. While the approach is free from ad-hoc parameters, it requires a selection of appropriate energy windows for describing low-energy and strongly correlated physics. In this study, we test the consistency of the multi-tier description by considering different low-energy windows for a series of cubic SrXO₃ (X = V, Cr, Mn) perovskites. Specifically, we compare the 3-orbital t2g model, the 5-orbital t2g + eg model, the 12-orbital t2g + Op model, and (in the case of SrVO₃) the 14-orbital t2g + eg + Op model and compare the results to available photoemission and X-ray absorption measurements. The multi-tier method yields consistent results for the t2g and t2g + eg low-energy windows, while the models with Op states produce stronger correlation effects and mostly agree well with experiment, especially in the unoccupied part of the spectrum. We also discuss the consistency between the fermionic and bosonic spectral functions and the physical origin of satellite features, and present momentum-resolved charge susceptibilities.
DOI: 10.24435/materialscloud:79-j3
title: Internal consistency of multi-tier GW+EDMFT

description: The multi-tier GW+EDMFT scheme is an ab-initio method for calculating the electronic structure of correlated materials. While the approach is free from ad-hoc parameters, it requires a selection of appropriate energy windows for describing low-energy and strongly correlated physics. In this study, we test the consistency of the multi-tier description by considering different low-energy windows for a series of cubic SrXO₃ (X = V, Cr, Mn) perovskites. Specifically, we compare the 3-orbital t2g model, the 5-orbital t2g + eg model, the 12-orbital t2g + Op model, and (in the case of SrVO₃) the 14-orbital t2g + eg + Op model and compare the results to available photoemission and X-ray absorption measurements. The multi-tier method yields consistent results for the t2g and t2g + eg low-energy windows, while the models with Op states produce stronger correlation effects and mostly agree well with experiment, especially in the unoccupied part of the spectrum. We also discuss the consistency between the fermionic and bosonic spectral functions and the physical origin of satellite features, and present momentum-resolved charge susceptibilities.
DOI: 10.24435/materialscloud:a7-r8
title: The optimal resolution level of a protein is an emergent property of its structure and dynamics

description: Molecular dynamics simulations provide a wealth of data whose in-depth analysis can be computationally demanding and, sometimes, even unnecessary. Dimensionality reduction techniques are thus routinely employed to simplify and improve the interpretation of trajectories focusing on specific subsets of the system's atoms; a key issue, in this context, is to determine the optimal resolution level, i.e. the smallest number of atoms needed to preserve the largest information content from the full atomistic trajectory. Here, we introduce the protein optimal resolution identification method (PROPRE), an unsupervised approach built on information theory principles that determines the smallest number of atoms that need to be retained to attain a synthetic yet informative description of a protein. By applying the method to a protein dataset and two particular case studies, we show that this number is typically between 1.5 and 2 times the number of residues in a protein; nonetheless, the degree of conformational variability of the system influences the specific number importantly, in that a broader range of large-scale conformations correlates with fewer retained sites. The PROPRE method is implemented in efficient and user-friendly python scripts, which are made available for download on a github repository.
Here, the raw data employed for the preparation of the associated manuscript are made available.
DOI: 10.24435/materialscloud:qh-gt
title: A bridge between trust and control: Computational workflows meet automated battery cycling

description: Compliance with good research data management practices means trust in the integrity of the data, and it is achievable by a full control of the data gathering process. In this work, we demonstrate tooling which bridges these two aspects, and illustrate its use in a case study of automated battery cycling. We successfully interface off-the-shelf battery cycling hardware with the computational workflow management software AiiDA, allowing us to control experiments, while ensuring trust in the data by tracking its provenance. We design user interfaces compatible with this tooling, which span the inventory, experiment design, and result analysis stages. Other features, including monitoring of workflows and import of externally generated and legacy data are also implemented. Finally, the full software stack required for this work is made available in a set of open-source packages.
DOI: 10.24435/materialscloud:9j-nb
title: A bridge between trust and control: Computational workflows meet automated battery cycling

description: Compliance with good research data management practices means trust in the integrity of the data, and it is achievable by a full control of the data gathering process. In this work, we demonstrate tooling which bridges these two aspects, and illustrate its use in a case study of automated battery cycling. We successfully interface off-the-shelf battery cycling hardware with the computational workflow management software AiiDA, allowing us to control experiments, while ensuring trust in the data by tracking its provenance. We design user interfaces compatible with this tooling, which span the inventory, experiment design, and result analysis stages. Other features, including monitoring of workflows and import of externally generated and legacy data are also implemented. Finally, the full software stack required for this work is made available in a set of open-source packages.
DOI: 10.24435/materialscloud:hm-xx
title: Phononic origin of the infrared dielectric properties of RE₂O₃ (RE = Y, Gd, Ho, Lu) compounds

description: Understanding the phononic origin of the infrared dielectric properties of yttria (Y₂O₃) and other rare-earth sesquioxides (RE₂O₃) is a fundamental task in the search of appropriate RE₂O₃ materials that serve particular infrared optical applications. We herein investigate the infrared dielectric properties of RE₂O₃ (RE = Y, Gd, Ho, Lu) using DFT-based phonon calculations and Lorentz oscillator model. The abundant IR-active optical phonon modes that are available for effective absorption of photons result in high reflectance of RE₂O₃, among which four IR-active modes originated from large distortions of REO₆ octahedra are found to contribute dominantly to the phonon dielectric constants. Particularly, the present calculation method by considering one-phonon absorption process is demonstrated with good reliability in predicting the infrared dielectric parameters of RE₂O₃ at the far-infrared as well as the vicinity of mid-infrared region, and the potential cutoff frequency/wavelength of its applicability is disclosed as characterized by the maximum frequency of IR-active longitudinal phonon modes. The results deepen the understanding on infrared dielectric properties of RE₂O₃, and aid the computational design of materials with appropriate infrared properties.
DOI: 10.24435/materialscloud:aq-fz
title: Phononic origin of the infrared dielectric properties of RE₂O₃ (RE = Y, Gd, Ho, Lu) compounds

description: Understanding the phononic origin of the infrared dielectric properties of yttria (Y₂O₃) and other rare-earth sesquioxides (RE₂O₃) is a fundamental task in the search of appropriate RE₂O₃ materials that serve particular infrared optical applications. We herein investigate the infrared dielectric properties of RE₂O₃ (RE = Y, Gd, Ho, Lu) using DFT-based phonon calculations and Lorentz oscillator model. The abundant IR-active optical phonon modes that are available for effective absorption of photons result in high reflectance of RE₂O₃, among which four IR-active modes originated from large distortions of REO₆ octahedra are found to contribute dominantly to the phonon dielectric constants. Particularly, the present calculation method by considering one-phonon absorption process is demonstrated with good reliability in predicting the infrared dielectric parameters of RE₂O₃ at the far-infrared as well as the vicinity of mid-infrared region, and the potential cutoff frequency/wavelength of its applicability is disclosed as characterized by the maximum frequency of IR-active longitudinal phonon modes. The results deepen the understanding on infrared dielectric properties of RE₂O₃, and aid the computational design of materials with appropriate infrared properties.
DOI: 10.24435/materialscloud:px-81
title: Locating guest molecules inside metal-organic framework pores with a multiscale computational approach

description: Molecular docking has traditionally mostly been employed in the field of protein-ligand binding. In the publication associated with this data, we extend this method, in combination with DFT-level geometry optimizations, to locate guest molecules inside the pores of metal-organic frameworks. Additional information on the adsorption strength in the studied host-guest systems emerges from the computed interaction energies. This record contains inputs and outputs of the molecular docking and the DFT computations.
DOI: 10.24435/materialscloud:at-th
title: Density functional theory study of silicon nanowires functionalized by grafting organic molecules

description: Functionalizing Silicon Nanowires (SiNWs) through covalent attachment of organic molecules offers diverse advantages, including surface passivation, introduction of new functionalities, and enhanced material performance in applications like electronic devices and biosensors. Given the wide range of available functional molecules, systematic large-scale screening is crucial. Therefore, we developed an automated computational workflow using Python scripts in conjunction with the AiiDa framework to explore structural configurations of functional molecules adsorbed onto silicon surfaces. This workflow generates multiple adhesion configurations corresponding to different binding orientations using surface and functional molecule structures as inputs.  
This dataset contains data related to the structural optimization of molecules with single, double, and triple carbon-carbon bonds attached to the nanowire surface in various adhesion configurations. We describe the chemisorption on SiNWs using the slab models for the Si facets since our reference are samples with diameters of SiNWs around 50 nm, while the quantum confinement effects are important for diameters below 10 nm.  For each configuration, structural characterization was conducted by calculating quantities including the bond distance between the two carbons closest to the surface and their respective bond angle relative to the z-axis, the carbon-silicon bond distance and its respective bond angle relative to the z-axis, along with the molecule's rotation angle in the xy plane. The values obtained are summarized in the main folder. The version v1 of dataset contains data related to the Si(111) surface and alkanes, alkenes, and alkynes with lengths from C2 to C10. The version v2 extends the dataset to moieties from C12 to C18. This version (v3) extends the dataset with new configurations for moieties from C2 to C18. The dataset will be extended to characterize the Si(110) surface of the nanowire. For each system the most stable configuration will be identified, and the analysis of the electronic properties will be conducted.
DOI: 10.24435/materialscloud:yn-vz
title: Inverse design of singlet fission materials with uncertainty-controlled genetic optimization

description: Singlet fission has shown potential for boosting the power conversion efficiency of solar cells, but the scarcity of suitable molecular materials hinders its implementation. We introduce an uncertainty-controlled genetic algorithm (ucGA) based on ensemble machine learning predictions from different molecular representations that concurrently optimizes excited state energies, synthesizability, and singlet exciton size for the discovery of singlet fission materials. We show that uncertainty in the model predictions can control how far the genetic optimization moves away from previously known molecules.
Running the ucGA in an exploitative setup performs local optimization on variations of known singlet fission scaffolds, such as acenes. In an explorative mode, hitherto unknown candidates displaying excellent excited state properties for singlet fission are generated. We suggest a class of heteroatom-rich mesoionic compounds as acceptors for charge-transfer mediated singlet fission. When included in larger conjugated donor-acceptor systems, these units exhibit strong localization of the triplet state, favorable diradicaloid character and suitable triplet energies for exciton injection into semiconductor solar cells. As the proposed candidates are composed of fragments from synthesized molecules, they are likely synthetically accessible.
DOI: 10.24435/materialscloud:vz-5h
title: Inverse design of singlet fission materials with uncertainty-controlled genetic optimization

description: Singlet fission has shown potential for boosting the power conversion efficiency of solar cells, but the scarcity of suitable molecular materials hinders its implementation. We introduce an uncertainty-controlled genetic algorithm (ucGA) based on ensemble machine learning predictions from different molecular representations that concurrently optimizes excited state energies, synthesizability, and singlet exciton size for the discovery of singlet fission materials. We show that uncertainty in the model predictions can control how far the genetic optimization moves away from previously known molecules.
Running the ucGA in an exploitative setup performs local optimization on variations of known singlet fission scaffolds, such as acenes. In an explorative mode, hitherto unknown candidates displaying excellent excited state properties for singlet fission are generated. We suggest a class of heteroatom-rich mesoionic compounds as acceptors for charge-transfer mediated singlet fission. When included in larger conjugated donor-acceptor systems, these units exhibit strong localization of the triplet state, favorable diradicaloid character and suitable triplet energies for exciton injection into semiconductor solar cells. As the proposed candidates are composed of fragments from synthesized molecules, they are likely synthetically accessible.