cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc921ky
title: CCDC 270089: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc921lz
title: CCDC 270090: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc921m0
title: CCDC 270091: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc921n1
title: CCDC 270092: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc921p2
title: CCDC 270093: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc921q3
title: CCDC 270094: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.f6bkw2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenisciformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((80 60,90 60,90 70,80 70,80 60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022745-251009101135966/datasets/export for details.
DOI: 10.5517/cc921r4
title: CCDC 270095: Experimental Crystal Structure Determination

description: Related Article: Jie-Peng Zhang, Yan-Yong Lin, Xiao-Chun Huang, Xiao-Ming Chen|2005|J.Am.Chem.Soc.|127|5495|doi:10.1021/ja042222t
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc921s5
title: CCDC 270096: Experimental Crystal Structure Determination

description: Related Article: T.Nabeshima, T.Saiki, J.Iwabuchi, S.Akine|2005|J.Am.Chem.Soc.|127|5507|doi:10.1021/ja042882y
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9228p
title: CCDC 270111: Experimental Crystal Structure Determination

description: Related Article: Chuanjiang Hu, A.Roth, M.K.Ellison, Jin An, C.M.Ellis, C.E.Schulz, W.R.Scheidt|2005|J.Am.Chem.Soc.|127|5675|doi:10.1021/ja044077p
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9229q
title: CCDC 270112: Experimental Crystal Structure Determination

description: Related Article: Chuanjiang Hu, A.Roth, M.K.Ellison, Jin An, C.M.Ellis, C.E.Schulz, W.R.Scheidt|2005|J.Am.Chem.Soc.|127|5675|doi:10.1021/ja044077p
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc922br
title: CCDC 270113: Experimental Crystal Structure Determination

description: Related Article: Chuanjiang Hu, A.Roth, M.K.Ellison, Jin An, C.M.Ellis, C.E.Schulz, W.R.Scheidt|2005|J.Am.Chem.Soc.|127|5675|doi:10.1021/ja044077p
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc922cs
title: CCDC 270114: Experimental Crystal Structure Determination

description: Related Article: Chuanjiang Hu, A.Roth, M.K.Ellison, Jin An, C.M.Ellis, C.E.Schulz, W.R.Scheidt|2005|J.Am.Chem.Soc.|127|5675|doi:10.1021/ja044077p
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc922fv
title: CCDC 270116: Experimental Crystal Structure Determination

description: Related Article: K.Ray, E.Bill, T.Weyhermuller, K.Wieghardt|2005|J.Am.Chem.Soc.|127|5641|doi:10.1021/ja040237l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gxvgvs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenisciformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((90 60,100 60,100 70,90 70,90 60))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022746-251009101135966/datasets/export for details.
DOI: 10.5281/zenodo.10683210
title: 10 Synthetic Genomics Datasets

description: These are 10 synthetic genomics datasets generated with NEAT v3 (based on TP53 gene of Homo Sapiens) for the use case of benchmarking somatic variant callers. To find more about our generating framework please visit synth4bench GitHub repository.

The datasets explore intrinsic NGS data parameters for the use case of observing their effect on tumor-only somatic variant calling algorithms. From the 10 datasets, there are 5 of them with different coverage (while keeping all other parameters fixed) and 5 with varying read length. The reads in all datasets are paired-end. All ground truth vcf files are also included.

If you find this dataset useful please cite the publication that describes the generation methods: https://doi.org/10.1101/2024.03.07.582313.




Name of File
Coverage
Lenght of Reads


300_30_10
300x
150


700_70_10
700x
150


1000_100_10
1000x
150


3000_300_10
3000x
150


5000_500_10
5000x
150


1000_50
1000x
50


1000_100
1000x
100


1000_170
1000x
170


1000_200
1000x
200


1000_300
1000x
300
DOI: 10.5281/zenodo.17356326
title: 10 Synthetic Genomics Datasets

description: These are 10 synthetic genomics datasets generated with NEAT v3 (based on TP53 gene of Homo Sapiens) for the use case of benchmarking somatic variant callers. To find more about our generating framework please visit synth4bench GitHub repository.

The datasets explore intrinsic NGS data parameters for the use case of observing their effect on tumor-only somatic variant calling algorithms. From the 10 datasets, there are 5 of them with different coverage (while keeping all other parameters fixed) and 5 with varying read length. The reads in all datasets are paired-end. All ground truth vcf files are also included.

If you find this dataset useful please cite the publication that describes the generation methods: https://doi.org/10.1101/2024.03.07.582313.




Name of File
Coverage
Lenght of Reads


300_30_10
300x
150


700_70_10
700x
150


1000_100_10
1000x
150


3000_300_10
3000x
150


5000_500_10
5000x
150


1000_50
1000x
50


1000_100
1000x
100


1000_170
1000x
170


1000_200
1000x
200


1000_300
1000x
300
DOI: 10.5517/cc922gw
title: CCDC 270117: Experimental Crystal Structure Determination

description: Related Article: K.Ray, E.Bill, T.Weyhermuller, K.Wieghardt|2005|J.Am.Chem.Soc.|127|5641|doi:10.1021/ja040237l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc922hx
title: CCDC 270118: Experimental Crystal Structure Determination

description: Related Article: K.Ray, E.Bill, T.Weyhermuller, K.Wieghardt|2005|J.Am.Chem.Soc.|127|5641|doi:10.1021/ja040237l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc922kz
title: CCDC 270120: Experimental Crystal Structure Determination

description: Related Article: K.Ray, E.Bill, T.Weyhermuller, K.Wieghardt|2005|J.Am.Chem.Soc.|127|5641|doi:10.1021/ja040237l
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8dd01
title: CCDC 250232: Experimental Crystal Structure Determination

description: Related Article: T.Alaviuhkola, J.Bobacka, M.Nissinen, K.Rissanen, A.Ivaska, J.Pursiainen|2005|Chem.-Eur.J.|11|2071|doi:10.1002/chem.200400992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8dd12
title: CCDC 250233: Experimental Crystal Structure Determination

description: Related Article: T.Alaviuhkola, J.Bobacka, M.Nissinen, K.Rissanen, A.Ivaska, J.Pursiainen|2005|Chem.-Eur.J.|11|2071|doi:10.1002/chem.200400992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8dd23
title: CCDC 250234: Experimental Crystal Structure Determination

description: Related Article: T.Alaviuhkola, J.Bobacka, M.Nissinen, K.Rissanen, A.Ivaska, J.Pursiainen|2005|Chem.-Eur.J.|11|2071|doi:10.1002/chem.200400992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8dd34
title: CCDC 250235: Experimental Crystal Structure Determination

description: Related Article: T.Alaviuhkola, J.Bobacka, M.Nissinen, K.Rissanen, A.Ivaska, J.Pursiainen|2005|Chem.-Eur.J.|11|2071|doi:10.1002/chem.200400992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8dd45
title: CCDC 250236: Experimental Crystal Structure Determination

description: Related Article: T.Alaviuhkola, J.Bobacka, M.Nissinen, K.Rissanen, A.Ivaska, J.Pursiainen|2005|Chem.-Eur.J.|11|2071|doi:10.1002/chem.200400992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8dd56
title: CCDC 250237: Experimental Crystal Structure Determination

description: Related Article: T.Alaviuhkola, J.Bobacka, M.Nissinen, K.Rissanen, A.Ivaska, J.Pursiainen|2005|Chem.-Eur.J.|11|2071|doi:10.1002/chem.200400992
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8ln5n
title: CCDC 256251: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8ln6p
title: CCDC 256252: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8ln7q
title: CCDC 256253: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8ln8r
title: CCDC 256254: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8ln9s
title: CCDC 256255: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8lnbt
title: CCDC 256256: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8lncv
title: CCDC 256257: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8lndw
title: CCDC 256258: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8lnfx
title: CCDC 256259: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8hbnq
title: CCDC 253073: Experimental Crystal Structure Determination

description: Related Article: I.Gautier-Luneau, C.Merle, D.Phanon, C.Lebrun, F.Biaso, G.Serratrice, J.-L.Pierre|2005|Chem.-Eur.J.|11|2207|doi:10.1002/chem.200401087
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8lngy
title: CCDC 256260: Experimental Crystal Structure Determination

description: Related Article: Xiao-Li Zhao, Quan-Ming Wang, T.C.W.Mak|2005|Chem.-Eur.J.|11|2094|doi:10.1002/chem.200401182
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8hbpr
title: CCDC 253074: Experimental Crystal Structure Determination

description: Related Article: I.Gautier-Luneau, C.Merle, D.Phanon, C.Lebrun, F.Biaso, G.Serratrice, J.-L.Pierre|2005|Chem.-Eur.J.|11|2207|doi:10.1002/chem.200401087
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.