cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/m59fyw5hs4.1
title: TrussMe-Fem: A toolbox for symbolic-numerical analysis and solution of structures

description: Structural mechanics is pivotal in comprehending how structures respond to external forces and imposed displacements. Typically, the analysis of structures is performed numerically using the direct stiffness method, which is an implementation of the finite element method. This method is commonly associated with the numerical solution of large systems of equations. However, the underlying theory can also be conveniently used to perform the analysis of structures either symbolically or in a hybrid symbolic-numerical fashion. This approach is useful to mitigate the computational burden as the obtained partial or full symbolic solution can be simplified and used to generate lean code for efficient simulations. Nonetheless, the symbolic direct stiffness method is also useful for model reduction purposes, as it allows the derivation of small-scale models that can be used for diminishing simulation time. Despite the mentioned advantages, symbolic computation carries intrinsically complex operations. In particular, the symbolic solution of large linear systems of equations is hard to compute, and it may not always be available due to software capabilities. This paper introduces a toolbox named TrussMe-Fem, whose implementation is based on the direct stiffness method. TrussMe-Fem leverages Maple®'s symbolic computation and Matlab®'s numerical capabilities for symbolic and hybrid symbolic-numerical analyses and solutions of structures. Efficient code generation is also possible by exploiting the simplification of the problem's expressions. The challenges posed by symbolic computation on the solution of large linear systems are addressed by introducing novel routines for the symbolic matrix factorization with the hierarchical representation of large expressions. For this purpose, the TrussMe-Fem toolbox optionally uses the Lem and Last Maple® packages, which are also available as open-source software.
DOI: 10.17632/nf35zjvmr2.1
title: EllipsoidalFiberFoam, a novel Eulerian-Lagrangian solver for resolving translational and rotational motion dynamics of ellipsoidal fibers

description: A novel Eulerian-Lagrangian MPI parallelized solver is developed to resolve the dynamics of ellipsoidal fibers in the OpenFOAM platform. Due to the nonspherical shape of the ellipsoidal fibers and the dependence of the drag force on the orientation of the fiber, the solver solves the full conservation of linear and angular momentum equations, in addition to the time evolution equation for Euler's parameters, quaternions. To this end, a new parcel type is introduced to represent ellipsoidal fibers with several new properties, including Euler's parameters, angular velocity, and torque class. Finally, new member functions are defined to solve angular momentum and Euler's parameters time evolution equations. The solver is the first publicly available, robust and reliable computational framework for the numerical analysis of ellipsoidal fibers motion. It promotes the capability of the standard Lagrangian OpenFOAM solvers and libraries to capture the orientation and rotational dynamics of nonspherical particles. As validation cases, the solver was applied to four benchmarks: three-dimensional rotation of an ellipsoid in linear shear flow, two-dimensional rotation of a magnetic ellipsoid in linear shear flow subjected to a uniform magnetic field, motion of an ellipsoid in pipe flow, and ellipsoids deposition in three-dimensional bifurcation flow. Comparison of the results with analytical solutions, experimental data and in-silico results indicates close agreements and high accuracy of the developed numerical model for single- and multi-physics test cases.
DOI: 10.17632/zztc9tscfx.1
title: Mind wandering and employee creativity

description: My research hypotheses are demonstrated followed:
Hypothesis 1a: Unintentional problem-focused mind wandering is positively related to employee radical creativity.
Hypothesis 1b: intentional problem-focused mind wandering is positively related to employee incremental creativity.
Hypothesis 2a: Cognitive flexibility mediates the positive relation between unintentional problem-focused mind wandering and employee radical creativity.
Hypothesis 2b: Cognitive persistence mediates the positive relation between intentional problem-focused mind wandering and employee incremental creativity.
Hypothesis 3a: The positive relationship between unintentional problem-focused mind wandering and cognitive flexibility is stronger when positive emotion-focused mind wandering is high rather than low.
Hypothesis 3b: The positive relationship between intentional problem-focused mind wandering and cognitive persistence is stronger when negative emotion-focused mind wandering is high rather than low.

We collected data from Chinese employees in the information transmission industry, software and IT services, and scientific research and technology services sectors through the Credamo online platform. Participants came from the R&D, marketing/functional, design, product, and other departments. A survey data set of 269 employees indicated that unintentional problem-focused mind wandering is related to enhancing radical creativity through cognitive flexibility, and intentional problem-focused mind wandering is related to fostering incremental creativity via cognitive persistence. Moreover, positive emotion-focused mind wandering strengthened the link between unintentional problem-focused mind wandering and cognitive flexibility, and negative emotion-focused mind wandering reinforced the relationship between intentional problem-focused mind wandering and cognitive persistence.

The full name of the variable abbreviation：
UPMW, unintentional problem-focused mind wandering; IPMW, intentional problem-focused mind wandering; PEMW, positive emotion-focused mind wandering; NEMW, negative emotion-focused mind wandering; CF, cognitive flexibility; CP, cognitive persistence; IC, incremental creativity; RC, radical creativity.
DOI: 10.17632/gsgdrjm2md.1
title: An unstructured geometrical un-split VOF method for viscoelastic two-phase flows

description: Since viscoelastic two-phase flows arise in various industrial and natural processes, developing accurate and efficient software for their detailed numerical simulation is a highly relevant and challenging research task. We present a geometrical unstructured Volume-of-Fluid (VOF) method for handling two-phase flows with viscoelastic liquid phase, where the latter is modeled via generic rate-type constitutive equations and a one-field description is derived by conditional volume averaging of the local instantaneous bulk equations and interface jump conditions. The method builds on the plicRDF-isoAdvector geometrical VOF solver that is extended and combined with the modular framework DeboRheo for viscoelastic computational fluid dynamics (CFD). A piecewise-linear geometrical interface reconstruction technique on general unstructured meshes is employed for discretizing the viscoelastic stresses across the fluid interface. DeboRheo facilitates a flexible combination of different rheological models with appropriate stabilization methods to address the high Weissenberg number problem.
DOI: 10.17632/zc7pn23g5r.1
title: AMEP: The active matter evaluation package for Python

description: The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and visualizing a broad variety of observables that are relevant to active matter systems. Examples range from the mean-square displacement and the structure factor to cluster-size distributions, binder cumulants, and growth exponents. AMEP is written in pure Python and is based on powerful libraries such as NumPy, SciPy, Matplotlib, and scikit-image. Computationally expensive methods are parallelized and optimized to run efficiently on workstations, laptops, and high-performance computing architectures, and an HDF5-based data format is used in the backend to store and handle simulation data as well as analysis results. AMEP provides the first comprehensive framework for analyzing simulation results of both particle-based and continuum simulations (as well as experimental data) of active matter systems. In particular, AMEP also allows it to analyze simulations that combine particle-based and continuum techniques such as used to study the motion of bacteria in chemical fields or for modeling particle motion in a flow field for example.
DOI: 10.17632/rndmcpsvbz.1
title: Genetic Purity, Polymorphic Marker survey and Evaluation of Cowpea parent lines

description: This is a data set use for the analysis in the paper titled "Genetic Purity, Polymorphic Marker survey and Evaluation of Cowpea parent lines". The data consists of quantitative and qualitative dataset of the lines.
DOI: 10.17632/swkr5w3kx4.1
title: Numerical analysis and integration of dynamical systems and the fractal dimension of boundaries

description: The set of Maple routines that comprises the package Ndynamics has been improved. Apart one of the main motivations for its creation, namely, the routines to calculate the fractal dimension of boundaries (via box counting), the package deals with the numerical evolution of dynamical systems and provide flexible plotting of the results. The package also brings an initial conditions generator, a numerical solver manager, and a focusing set of routines that allow for better analysis of the graphical display of the results. Many new Maple-in-built numerical solvers are now programmed and available for the user of the package. The novelty that the package presented at the time of its release, an optional numerical interface, is maintained and updated.
DOI: 10.17632/tdd78ttwkd.1
title: Dataset Green IT Adoption in Sector Indonesian Higher Education

description: Data for this study were gathered using an online questionnaire distributed among academics familiar with Green IT practices in higher education. The questionnaire was created based on a comprehensive literature review about Green IT implementation in universities, ensuring relevance and thoroughness in the topic coverage. The questions were designed to be specific, and clear, and used verbal labels for response options to reduce ambiguity and improve response quality. Each item focused on a single idea to avoid confusion and increase the accuracy of responses. Random sampling methods enhanced the sample's representativeness within the academic community. This methodological approach aims to capture a diverse array of insights into the adoption and challenges of Green IT across Indonesian higher education institutions
DOI: 10.15472/vob0bz
title: Registros de Congrio (Acosmium nitens) en los departamentos de Arauca, Casanare y Vichada

description: El congrio (Acosmium nitens) es una especie arbórea conocida en la Orinoquia por la calidad de su madera, aunque no ha sido evaluada y asignada a alguna categoría de amenaza, en estudios locales se ha considerado como amenazada por la explotación insostenible de su madera (Alcázar-Caicedo & Ramírez-Hernández, 2011). Por este motivo Corporinoquia identificó la necesidad de contar con un estudio básico de caracterización del congrio, con el propósito de continuar aportando estrategias tangibles frente a los retos de la conservación de especies altamente usadas por la comunidad. Esto se realizó el estudio básico de caracterización del congrio (Acosmium nitens) en los departamentos de Arauca, Casanare y Vichada a través de la Unión temporal congriales de la Orinoquia (UT Congriales). Este proyecto se enmarca en el Plan de acción 2016-2019, en la Línea estratégica 2 conocer para conservar nuestra biodiversidad, programa de implementación de estrategias de conservación para disminuir los impactos sobre la biodiversidad (programa IV), proyecto de CONSOLIDACIÓN DE LAS ESTRATEGIAS DE CONSERVACIÓN PARA DISMINUIR LOS IMPACTOS SOBRE LA BIODIVERSIDAD.
description: Se identificaron las poblaciones naturales de la especie en tres departamentos en el 2018, con un total de 566 registros biológicos de la especie.
DOI: 10.17632/tdd78ttwkd.2
title: Dataset Green IT Adoption in Sector Indonesian Higher Education

description: Data for this study were gathered using an online questionnaire distributed among academics familiar with Green IT practices in higher education. The questionnaire was created based on a comprehensive literature review about Green IT implementation in universities, ensuring relevance and thoroughness in the topic coverage. The questions were designed to be specific, and clear, and used verbal labels for response options to reduce ambiguity and improve response quality. Each item focused on a single idea to avoid confusion and increase the accuracy of responses. Random sampling methods enhanced the sample's representativeness within the academic community. This methodological approach aims to capture a diverse array of insights into the adoption and challenges of Green IT across Indonesian higher education institutions
DOI: 10.17632/9vgv5bfcry.1
title: Phytase-mediated hydrolysis of different soil phytate species: Kinetics and interfacial mechanisms

description: Phytates adsorption and hydrolysis kinetics; In-situ ATR-FTIR data; P K-edge XANES data; P NMR data; Characterization of minerals and phytase; Linear fit of phytates hydrolysis; CD spectra data
DOI: 10.17632/shmmpv69rt.1
title: Uncovering the therapeutic potentials of marine-derived natural compounds with small amounts for neurological disorders

description: The dataset contains all of the raw data used to generate the figures: western blots, immunoflourescence, open-field test data, and RNA-seq on new compounds, including NBU-1, NBU-2, and NBU-3.
DOI: 10.17632/9vgv5bfcry.2
title: Phytase-mediated hydrolysis of different soil phytate species: Kinetics and mineral interfacial mechanisms

description: Phytates adsorption and hydrolysis kinetics; In-situ ATR-FTIR data; P K-edge XANES data; P NMR data; Characterization of minerals and phytase; Linear fit of phytates hydrolysis; CD spectra data
DOI: 10.17632/fx3vd2tgcf.1
title: Data for: Past, present, and future spatial distributions of deep-sea coral and sponge microbiomes revealed by predictive models

description: This dataset includes output rasters of the spatio-temporal model presented in Busch et al. 2024 (Data folder 1) giving cumulative microbial richnesses in deep-sea sponges and corals for the present, and two future scenarios. We also provide point data on the environmental variables used in our predictions (Data file 2): Depth, Slope, Bottom Stress (“BtmStress”), Bottom Current Speed (“BtmCur”), Mixed Layer Depth (“MLD”), Bottom Salinity (“BtmSal”), Sea Surface Salinity (“SSS”), Sea Surface Temperature (“SST”), and Bottom Temperature (“BtmTmp”) averaged for each of the seven time periods (extracted from the Simple Ocean Data Assimilation, SODA, for the past periods 1871-1900, 1901-1930, 1931-1960, 1961-1989; extracted from the BNAM Ocean Model for the present period 1990-2015 and for the future periods 2046-2065 and 2066-2085 under a RCP8.5 scenario). This dataset also contains raw occurrence data compiled from different indicated sources (Data file 3), and presence/absence data (true absences as well as pseudo absences) gridded to be used as model input (Data file 4) of the analysed host species Weberella bursa, Stryphnus fortis, Lophelia pertusa, Desmophyllum dianthus, and Vazella pourtalesii. Another data file (Data file 5) contains an overview of the ENA (European Nucleotide Archive) accession numbers, the original literature sources, and some basic ecological metadata of the used microbial data (16S amplicon data) drawn from the host species. After assigning the microbial abundance status (HMA – high microbial abundance, and LMA – low microbial abundance) to ten key sponge species in the Flemish Cap area area (Asconema foliatum, Geodia barretti, Geodia macandrewii, Geodia parva-phlegraei, Mycale lingua, Stelletta normani, Stryphnus fortis, Stylocordyla borealis, Tentorium semisuberites, and Weberella bursa) we correlated our spatial predictions of status occurrence with predictions of overall ecosystem function, i.e. here nutrient cycling and habitat provision (derived from Murillo et al. 2020, Diversity and Distributions). For our study the original rasters (created by Murillo et al. 2020) were resampled to a 0.088 cell size using Bilinear interpolation as the resampling technique in ArcGIS Pro. Data 6 contains the resampled predictions of overall ecosystem function, as well as our predicted occurrences of the HMA and LMA status, and the respective summed biomasses. In our article (above) we show a biomass network, integrating the generated information on HMA and LMA sponge biomasses with biomass measurements of other sessile filter feeding invertebrates, which occur in high abundances at the Flemish Cap (data taken from Murillo et al. 2020, Diversity and Distributions). Data file 7 contains the underlying biomass data used for the network, covering 116 different species, which are classified according to size (small, medium, medium large, large), functional (passive “PFF”, and active “AFF” filter feeders) and taxonomic (8 phyla) groups.
DOI: 10.17632/zxdy8ngfks
title: Carbonate parameters in Sansha Bay

description: Dataset contain temperature, salinity, DIC, TA, pCO2 in water and pCO2 in atmosphere during the spring cruise in 2024, fall cruise in 2022, and winter cruise in 2021.
DOI: 10.17632/zxdy8ngfks.1
title: Carbonate parameters in Sansha Bay

description: Dataset contain temperature, salinity, DIC, TA, pCO2 in water and pCO2 in atmosphere during the spring cruise in 2024, fall cruise in 2022, and winter cruise in 2021.
DOI: 10.17632/fx3vd2tgcf.2
title: Data for: Putative past, present, and future spatial distributions of deep-sea coral and sponge microbiomes revealed by predictive models

description: This dataset includes output rasters of the spatio-temporal model presented in Busch et al. 2024 (Data folder 1) giving cumulative microbial richnesses in deep-sea sponges and corals for the present, and two future scenarios. We also provide point data on the environmental variables used in our predictions (Data file 2): Depth, Slope, Bottom Stress (“BtmStress”), Bottom Current Speed (“BtmCur”), Mixed Layer Depth (“MLD”), Bottom Salinity (“BtmSal”), Sea Surface Salinity (“SSS”), Sea Surface Temperature (“SST”), and Bottom Temperature (“BtmTmp”) averaged for each of the seven time periods (extracted from the Simple Ocean Data Assimilation, SODA, for the past periods 1871-1900, 1901-1930, 1931-1960, 1961-1989; extracted from the BNAM Ocean Model for the present period 1990-2015 and for the future periods 2046-2065 and 2066-2085 under a RCP8.5 scenario). This dataset also contains raw occurrence data compiled from different indicated sources (Data file 3), and presence/absence data (true absences as well as pseudo absences) gridded to be used as model input (Data file 4) of the analysed host species Weberella bursa, Stryphnus fortis, Lophelia pertusa, Desmophyllum dianthus, and Vazella pourtalesii. Another data file (Data file 5) contains an overview of the ENA (European Nucleotide Archive) accession numbers, the original literature sources, and some basic ecological metadata of the used microbial data (16S amplicon data) drawn from the host species. After assigning the microbial abundance status (HMA – high microbial abundance, and LMA – low microbial abundance) to ten key sponge species in the Flemish Cap area area (Asconema foliatum, Geodia barretti, Geodia macandrewii, Geodia parva-phlegraei, Mycale lingua, Stelletta normani, Stryphnus fortis, Stylocordyla borealis, Tentorium semisuberites, and Weberella bursa) we correlated our spatial predictions of status occurrence with predictions of overall ecosystem function, i.e. here nutrient cycling and habitat provision (derived from Murillo et al. 2020, Diversity and Distributions). For our study the original rasters (created by Murillo et al. 2020) were resampled to a 0.088 cell size using Bilinear interpolation as the resampling technique in ArcGIS Pro. Data 6 contains the resampled predictions of overall ecosystem function, as well as our predicted occurrences of the HMA and LMA status, and the respective summed biomasses. In our article (above) we show a biomass network, integrating the generated information on HMA and LMA sponge biomasses with biomass measurements of other sessile filter feeding invertebrates, which occur in high abundances at the Flemish Cap (data taken from Murillo et al. 2020, Diversity and Distributions). Data file 7 contains the underlying biomass data used for the network, covering 116 different species, which are classified according to size (small, medium, medium large, large), functional (passive “PFF”, and active “AFF” filter feeders) and taxonomic (8 phyla) groups.
DOI: 10.15468/dl.25v6zf
title: Occurrence Download

description: A dataset containing 2884 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor couguar (Kerr, 1792)"
 ]
}

 The dataset includes 2884 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062639-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8dcjt4k9pf
title: HE staining image

description: To observe the effects of CIP on rat hippocampal tissues, we performed HE staining on samples from each group. In the sham group, the cytoplasm and nuclei of the neuronal cells in the CA1 region of the hippocampus of the SD rats exhibited uniform staining, and the cells were neatly arranged without any evident pathological alterations. In the I/R group, the neuronal cells in the CA1 region of the hippocampus of the SD rats were disorganized with a decreased number of neuronal cells, the microstructure was loose, with obvious edema, and ghost cells were visible. In the CIP group, the arrangement of neuronal cells in the CA1 area of the hippocampus was significantly more ordered and compact than that in the I/R group; the degree of cell damage was improved, but local edema was still present, and the number of ghost cells was significantly reduced. Thus, the results suggest that CIP can ameliorate MCAO-induced neuronal cell damage in rats.
DOI: 10.17632/8dcjt4k9pf.1
title: HE staining image

description: To observe the effects of CIP on rat hippocampal tissues, we performed HE staining on samples from each group. In the sham group, the cytoplasm and nuclei of the neuronal cells in the CA1 region of the hippocampus of the SD rats exhibited uniform staining, and the cells were neatly arranged without any evident pathological alterations. In the I/R group, the neuronal cells in the CA1 region of the hippocampus of the SD rats were disorganized with a decreased number of neuronal cells, the microstructure was loose, with obvious edema, and ghost cells were visible. In the CIP group, the arrangement of neuronal cells in the CA1 area of the hippocampus was significantly more ordered and compact than that in the I/R group; the degree of cell damage was improved, but local edema was still present, and the number of ghost cells was significantly reduced. Thus, the results suggest that CIP can ameliorate MCAO-induced neuronal cell damage in rats.
DOI: 10.17632/pn9msny47t.1
title: Zn partitioning in arc systems

description: Data for "Zinc partitioning between minerals and melts in arc systems: Implications for the iron-depleting evolution of continental magmas"