cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17638/datacat.liverpool.ac.uk/2585
title: Data associated with the manuscript Superiority of chromosomal compared to plasmid-encoded compensatory mutations.

description: Ecological dynamics of plasmid compensatory mutations: raw data.

The abstract submitted with the preprint is pasted below:

Plasmids are important vectors of horizontal gene transfer in microbial communities but can impose a burden on the bacteria that carry them. Such plasmid fitness costs are thought to arise principally from conflicts between chromosomal- and plasmid-encoded molecular machineries, and thus can be ameliorated by compensatory mutations (CMs) that reduce or resolve the underlying causes. CMs can arise on plasmids (i.e. plaCM) or on chromosomes (i.e. chrCM), with contrasting predicted effects upon plasmid success and subsequent gene transfer because plaCM can also reduce fitness costs in plasmid recipients, whereas chrCM can potentially ameliorate multiple distinct plasmids. Here, we develop theory and a novel experimental system to directly compare the ecological effects of plaCM and chrCM that arose during evolution experiments between Pseudomonas fluorescens SBW25 and its sympatric mercury resistance megaplasmid pQBR57. We show that while plaCM was predicted to succeed under a broader range of parameters in mathematical models, chrCM dominated in our experiments, including conditions with numerous recipients, due to a more efficacious mechanism of compensation, and advantages arising from transmission of costly plasmids to competitors (plasmid ‘weaponisation’). We show analytically the presence of a mixed Rock-Paper-Scissors regime for CMs, driven by trade-offs with horizontal transmission, that offers one possible explanation for the observed failure of plaCM to dominate even in competition against an uncompensated plasmid. Our results reveal broader implications of plasmid-bacterial evolution for plasmid ecology, demonstrating the importance of specific compensatory mutations for resistance gene spread. One consequence of the superiority of chrCM over plaCM is the likely emergence in microbial communities of compensated bacteria that can act as ‘hubs’ for plasmid accumulation and dissemination.

Analysis scripts associated with these data are available at https://github.com/jpjh/COMPMUT_dynamics
DOI: 10.15468/dl.9h9q6g
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((47.00536 -19.8461, 47.10185 -19.8461, 47.10185 -19.71365, 47.00536 -19.71365, 47.00536 -19.8461))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 152 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013772-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17638/datacat.liverpool.ac.uk/2834
title: Recovery quality and arterial oxygen tension in horses

description: Arterial oxygen tension values from horses recovering from general anaesthesia
DOI: 10.15468/dl.rvuwxy
title: Occurrence Download

description: A dataset containing 664 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex curaica Kunth"
 ]
}

 The dataset includes 664 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013773-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xz669t
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-1.11073 38.32579,-1.01504 38.10371,-0.8335 37.76241,-0.68101 37.83503,-0.10008 38.37965,0.35739 38.72094,-0.18722 39.51245,-0.12187 39.65041,0.56798 40.39109,0.4881 40.73986,-0.23079 40.81247,-0.50673 40.59441,-0.41959 40.31121,-0.90611 39.99897,-1.18931 40.26038,-1.59596 40.17324,-1.59596 39.37448,-1.19148 38.63323,-1.15158 38.48131,-1.11073 38.32579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Botaurus stellaris (Linnaeus, 1758)"
 ]
}

 The dataset includes 111 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013774-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pujs5
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((51.55014 35.31235, 51.67817 35.31235, 51.67817 35.45219, 51.55014 35.45219, 51.55014 35.31235))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 108 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013775-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eb46e3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((45.48146 2.766398, 45.53177 2.766398, 45.53177 2.790672, 45.48146 2.790672, 45.48146 2.766398))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013776-241024112534372/datasets/export for details.
DOI: 10.15468/dl.bm9zkk
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is 24d131bf-91a6-441a-add7-07c1a7d6e147",
 "TaxonKey is one of (Aethes francillana (Fabricius, 1794))"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013778-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wef6kt
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is 24d131bf-91a6-441a-add7-07c1a7d6e147",
 "TaxonKey is one of (Aethes francillana (Fabricius, 1794))"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013777-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qsnwv
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is 24d131bf-91a6-441a-add7-07c1a7d6e147",
 "TaxonKey is one of (Aethes francillana (Fabricius, 1794))"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013779-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14016872
title: Data and code: Investigating long-term trophic stability in North Atlantic cod (Gadus morhua) through nitrogen stable isotope analysis of amino acids

description: Data and code for replicating the analysis in the paper 'Investigating long-term trophic stability in North Atlantic cod (Gadus morhua) through nitrogen stable isotope analysis of amino acids'
DOI: 10.5281/zenodo.14016873
title: Data and code: Investigating long-term trophic stability in North Atlantic cod (Gadus morhua) through nitrogen stable isotope analysis of amino acids

description: Data and code for replicating the analysis in the paper 'Investigating long-term trophic stability in North Atlantic cod (Gadus morhua) through nitrogen stable isotope analysis of amino acids'
DOI: 10.15468/dl.5yw33v
title: Occurrence Download

description: A dataset containing 411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((51.74565 35.71463, 51.9231 35.71463, 51.9231 35.7584, 51.74565 35.7584, 51.74565 35.71463))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 411 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013780-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3us3u2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((51.68862 35.29488, 51.75392 35.29488, 51.75392 35.37352, 51.68862 35.37352, 51.68862 35.29488))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013781-241024112534372/datasets/export for details.
DOI: 10.5281/zenodo.14013780
title: Raw data for "A proof of concept study in small and large animal models for cCoupling liver normothermic machine perfusion with  mesenchymal stromal cell bioreactors"
DOI: 10.5281/zenodo.14013781
title: Raw data for "A proof of concept study in small and large animal models for cCoupling liver normothermic machine perfusion with  mesenchymal stromal cell bioreactors"
DOI: 10.48420/25914619
title: Magnetophotoselection simulations and fitting of X-band LaserIMD datasets to support publication: I<sub>2</sub>BODIPY as a new photoswitchable spin label for light-induced pulsed EPR dipolar spectroscopy exploiting magnetophotoselection

description: Magnetophotoselection simulations and fitting of X-band LaserIMD datasets to support publication: I<sub>2</sub>BODIPY as a new photoswitchable spin label for light-induced pulsed EPR dipolar spectroscopy exploiting magnetophotoselectionPlease read README.txt for description of what each folder contains.
DOI: 10.48420/25914619.v1
title: Magnetophotoselection simulations and fitting of X-band LaserIMD datasets to support publication: I<sub>2</sub>BODIPY as a new photoswitchable spin label for light-induced pulsed EPR dipolar spectroscopy exploiting magnetophotoselection

description: Magnetophotoselection simulations and fitting of X-band LaserIMD datasets to support publication: I<sub>2</sub>BODIPY as a new photoswitchable spin label for light-induced pulsed EPR dipolar spectroscopy exploiting magnetophotoselectionPlease read README.txt for description of what each folder contains.
DOI: 10.15468/dl.aqseqh
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((51.37499 33.93628, 51.48426 33.93628, 51.48426 34.01444, 51.37499 34.01444, 51.37499 33.93628))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 38 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013782-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12626652
title: MAVIL (Multidimensional Assessment for Visual Data Literacy) Survey Data

description: Survey data set - CSV format - 49 variables - 438 observations - English translation (surveyed country is anonymized)

Reference sheet for survey data set - CSV - 6 variables - 49 observations - English translation (surveyed country is anonymized)

Questionnaire - PDF format - 8 pages - English translation (surveyed country is anonymized)
DOI: 10.15468/dl.xvvtzb
title: Occurrence Download

description: A dataset containing 34807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((47.42959 -19.04378, 47.63295 -19.04378, 47.63295 -18.72162, 47.42959 -18.72162, 47.42959 -19.04378))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 34807 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013783-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14013351
title: Dataset used in the study "Nationwide heat-related workability loss and adaptation measures: development of a geospatial tool to support work management in heat conditions"

description: This directory includes codes, input and output data of the study entitled “Nationwide heat-related workability loss and adaptation measures: development of a geospatial tool to support work management in heat conditions”.

The attached code allows to calculate the workability loss occurred in Italy for workers performing different metabolic rate tasks (moderate and high) in summer (from June to August) during the period 2007-2019.

According to the methodology implemented by Bröde et al. (2018), the workability loss was calculated in shade and sun conditions using hourly Wet Bulb Globe Temperature (WBGT) data obtained from downscaled procedure developed for Italy at 2.5 km spatial resolution (Capecchi et al., 2023).

The average workability loss was obtained within each Italian plain municipality areas filtered by elevation data (under 300 m a.s.l.), combining several information about geographical areas (northern, central, southern and island municipalities) and the distance from the coastline.

The input data are polygonal features (shapefile) of the Italian municipalities from the National Institute of Statistics (ISTAT, source: https://www.istat.it/en/).

The output data are the municipality datasets, including the geographical classification and the workability loss information averaged on a ten-day basis (decade) for various 8-hour working time slots (5am-1pm; 6am-2pm; 7am-3pm; 8am-4pm; 9am-5pm):  

For further information about the output data structure, please read the “description_output_data.pdf” file in the output data folder.

 

This work was funded by INAIL Research Plan 2022–2024 (ID 05), under Project WORKLIMATE 2.0 (Prot. N. 115715, April 18, 2023).

 

Contacts

Scientific coordinator, PhD Marco Morabito, e-mail: marco.morabito@cnr.it

 

References

Bröde, P., Fiala, D., Lemke, B., Kjellstrom, T. Estimated work ability in warm outdoor environments depends on the chosen heat stress assessment metric. Int J Biometeorol. 62(3):331-345 (2018). https://doi.org/10.1007/s00484-017-1346-9

 

Capecchi, V., Pasi, F., Gozzini, B., Brandini, C. A convection-permitting and limited area model hindcast driven by ERA5 data: precipitation performances in Italy. Climate Dynamics 61, 1411-1437 (2023). https://doi.org/10.1007/s00382-022-06633-2
DOI: 10.5281/zenodo.14013352
title: Dataset used in the study "Nationwide heat-related workability loss and adaptation measures: development of a geospatial tool to support work management in heat conditions"

description: This directory includes codes, input and output data of the study entitled “Nationwide heat-related workability loss and adaptation measures: development of a geospatial tool to support work management in heat conditions”.

The attached code allows to calculate the workability loss occurred in Italy for workers performing different metabolic rate tasks (moderate and high) in summer (from June to August) during the period 2007-2019.

According to the methodology implemented by Bröde et al. (2018), the workability loss was calculated in shade and sun conditions using hourly Wet Bulb Globe Temperature (WBGT) data obtained from downscaled procedure developed for Italy at 2.5 km spatial resolution (Capecchi et al., 2023).

The average workability loss was obtained within each Italian plain municipality areas filtered by elevation data (under 300 m a.s.l.), combining several information about geographical areas (northern, central, southern and island municipalities) and the distance from the coastline.

The input data are polygonal features (shapefile) of the Italian municipalities from the National Institute of Statistics (ISTAT, source: https://www.istat.it/en/).

The output data are the municipality datasets, including the geographical classification and the workability loss information averaged on a ten-day basis (decade) for various 8-hour working time slots (5am-1pm; 6am-2pm; 7am-3pm; 8am-4pm; 9am-5pm):  

For further information about the output data structure, please read the “description_output_data.pdf” file in the output data folder.

 

This work was funded by INAIL Research Plan 2022–2024 (ID 05), under Project WORKLIMATE 2.0 (Prot. N. 115715, April 18, 2023).

 

Contacts

Scientific coordinator, PhD Marco Morabito, e-mail: marco.morabito@cnr.it

 

References

Bröde, P., Fiala, D., Lemke, B., Kjellstrom, T. Estimated work ability in warm outdoor environments depends on the chosen heat stress assessment metric. Int J Biometeorol. 62(3):331-345 (2018). https://doi.org/10.1007/s00484-017-1346-9

 

Capecchi, V., Pasi, F., Gozzini, B., Brandini, C. A convection-permitting and limited area model hindcast driven by ERA5 data: precipitation performances in Italy. Climate Dynamics 61, 1411-1437 (2023). https://doi.org/10.1007/s00382-022-06633-2
DOI: 10.34740/kaggle/dsv/9771268
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.15468/dl.qxux23
title: Occurrence Download

description: A dataset containing 303 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Triticum aestivum var. lutescens (Alef.) Hayek",
 "Year 1950-2024"
 ]
}

 The dataset includes 303 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013784-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ns2jzf
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((52.63798 36.5039, 52.71863 36.5039, 52.71863 36.61816, 52.63798 36.61816, 52.63798 36.5039))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 259 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013785-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5290/1220049
title: Small punch creep test data for AISI 316L ar material at 600 °C and a load of 500 N (specimen identifier FK-01)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.
DOI: 10.5290/1220050
title: Small punch creep test data for AISI 316L ar material at 600 °C and a load of 500 N (specimen identifier FK-02)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.
DOI: 10.5290/1220051
title: Small punch creep test data for AISI 316L ar material at 602 °C and a load of 500 N (specimen identifier FK-11)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.
DOI: 10.5290/1220052
title: Small punch creep test data for AISI 316L ar material at 602 °C and a load of 500 N (specimen identifier FK-12)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.
DOI: 10.5290/1220053
title: Small punch creep test data for AISI 316L ar material at 600 °C and a load of 500 N (specimen identifier FK-15)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.
DOI: 10.5290/1220054
title: Small punch creep test data for AISI 316L ar material at 600 °C and a load of 500 N (specimen identifier FK-16)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.
DOI: 10.5290/1220055
title: Small punch creep test data for AISI 316L ar material at 600 °C and a load of 450 N (specimen identifier FI-24)

description: Data created at JRC, Netherlands during the Horizon 2020 NUCOBAM project aiming to develop the qualification process and evaluate the in-service behaviour of AM materials, allowing the use of additively manufactured components in nuclear installations. The project has received funding from the Euratom research and training programme 2014-2018 under Grant Agreement No. 945313.