cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.5hqbzkhbx
title: Drivers of partial migration in the reddish egret Egretta rufescens

description: The reddish egret Egretta rufescens is North America’s rarest Ardeidae and
 is listed as ‘Near Threatened’ by the IUCN, as endangered in Mexico, and
 as a species of conservation concern throughout much of their range in the
 United States. Little is known about the migratory behavior of the reddish
 egret. Individuals that were banded during the breeding season in Texas,
 USA, have been resighted away from breeding areas; however, records are
 limited and the extent of migration is unknown. Using GPS transmitters, we
 found reddish egrets breeding in southern Texas exhibited a partial
 migration strategy, with 39% of the marked population migrating from
 breeding sites. We assessed the dominance, body size, and arrival time
 hypotheses to better understand the drivers of partial migration. We did
 not find support for the dominance or body size hypotheses; both males and
 females migrated, and migratory status of individuals did not change
 across the years of study. Long-distance migrants were also larger than
 resident individuals. We did find some support for the arrival time
 hypothesis. Residents began breeding earlier than long-distance migrants
 and had moderately greater nest success. However, within long-distance
 migrants, an earlier arrival to breeding areas did not necessarily equate
 to earlier nesting or greater nest success. This study is the first to
 examine the migratory behavior of adult reddish egrets and assesses the
 dominance, body size, and arrival time hypotheses as explanations for
 partial migration in this species. Further, the results of this study
 emphasize the need for international conservation efforts.
description: Reddish egrets were tracked using satellite transmitters.
DOI: 10.5061/dryad.n02v6wx36
title: Quantifying the complexity of plant reproductive structures reveals a history of morphological and functional integration

description: Vascular plant reproductive structures have become more complex through
 time, evolving differentiated parts that interact in specialized ways. But
 quantifying these patterns at broad scales is challenging because lineages
 produce disparate reproductive structures that cannot readily be compared.
 We develop a novel approach for analyzing interactions within reproductive
 structures using networks, treating component parts as nodes and a suite
 of physical and functional interactions among parts as edges. We apply
 this approach to the plant fossil record, showing that interactions have
 generally increased through time and that the concentration of these
 interactions has shifted towards differentiated surrounding organs,
 resulting in more compact, functionally integrated structures. Such
 transference of function and morphological differentiation are widespread
 across plant lineages, but their extent and timing vary with reproductive
 biology; seed-producing structures show them more strongly than spore or
 pollen-producing structures. More broadly, our results demonstrate that
 major reproductive innovations like the origin of seeds and angiospermy
 were associated with increased integration and interactions among parts.
 However, they also reveal that for certain lineages, such as Mesozoic
 gymnosperms, millions of years elapsed between the origin of a
 reproductive innovation and a measurable increase in the integration and
 interaction among parts within their reproductive structures.
description: R; Python
DOI: 10.6078/d15t50
title: The role of body size and cuticular hydrocarbons in the desiccation resistance of invasive Argentine ants (Linepithema humile)

description: An insect's cuticle is typically covered in a layer of wax
 prominently featuring various hydrocarbons involved in desiccation
 resistance and chemical communication. In Argentine ants (Linepithema
 humile), cuticular hydrocarbons (CHCs) communicate colony identity, but
 also provide waterproofing necessary to survive dry conditions. Theory
 suggests different CHC compound classes have functional trade-offs, such
 that selection for compounds used in communication would compromise
 waterproofing, and vice versa. We sampled sites of invasive L. humile
 populations from across California to test if CHC differences between them
 can explain differences in their desiccation survival. We hypothesized
 that CHCs whose abundance was correlated with environmental factors would
 determine survival during desiccation, but our regression analysis did not
 support this hypothesis. Interestingly, we found the abundance of most
 CHCs had a negative correlation with survival, regardless of compound
 class. We suggest that the CHC differences between L. humile nests in
 California are insufficient to explain their differential survival against
 desiccation, and that body mass is a better predictor of desiccation
 survival at this scale of comparison.
DOI: 10.15468/dl.e464v6
title: Occurrence Download

description: A dataset containing 6509 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Geometry POLYGON((-75.13929 0.93443,-74.2811 0.19605,-73.73444 0.55766,-74.54153 1.41114,-75.13929 0.93443))"
 ]
}

 The dataset includes 6509 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003586-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.x69p8czq3
title: Data from: Transmission line data of different fault instances retrieved through Phasor Measurement Unit (PMU)

description: This study presents a dataset comprising time series data pertaining to
 different electrical grid scenarios, encompassing both fault-free
 instances and occurrences of short circuits. The dataset was meticulously
 created by simulating various fault scenarios using the ePMU DSA tools and
 Matlab Simulink. To capture these scenarios, a Phasor Measurement Unit
 (PMU) was deployed on a transmission line simulation model. Given the
 impracticality and potential risks associated with generating actual
 faults in a real power grid, this approach of simulating faulty scenarios
 through advanced tools has proven to be a reliable and effective
 methodology in the field of electrical grid studies. The resulting dataset
 offers valuable insights into power grid behavior during both normal and
 faulted conditions, thereby serving as a valuable resource for researchers
 and practitioners in the domain of power systems and fault analysis.
description: This dataset contains a collection of time series data related to
 different electrical grid situations, including instances with no faults
 and occurrences of short circuits. To create this dataset, various fault
 scenarios were simulated using ePMU DSA tools and Matlab Simulink. The
 data was gathered by placing a Phasor Measurement Unit (PMU) on a
 simulation model of the transmission line. Given the impracticality and
 potential risks associated with creating actual faults in a real power
 grid, simulating faulty scenarios using these tools has proven to be a
 reliable and effective approach in this field of study.
DOI: 10.5061/dryad.nvx0k6dz6
title: Data from: Haplopteris palustris, a new terrestrial vittarioid fern (Pteridaceae; Polypodiales) from Western Malaysia

description: A new vittarioid fern species, Haplopteris palustris, is here described
 from the swamp forests in western Malesia based on both morphological and
 molecular phylogenetic evidence. This species is unique among all
 recognized congeners with its strongly raised midrib on the adaxial
 lamina. Through phylogenetic analysis, it is resolved as the sister group
 of H. sessilifrons, a species usually found in lowland mixed dipterocarp
 forests. Additionally, we provide chromosome counts for this new species.
 Our finding underscores the significance of Southeastern Asian swamp
 forests, emphasizing the need for conservation endeavors and research to
 ensure the protection of this invaluable ecosystem.
description: # Haplopteris palustris, A New Terrestrial Vittarioid Fern (Pteridaceae;
 Polypodiales) from Western Malesia
 ## Description of the data
 and file structure A DNA sequence alignment including four markers
 (*chlL*, *matK*, and *ndhF* plus *trnL-F*) in fasta format used to conduct
 the phylogenetic analysis.
DOI: 10.5061/dryad.tmpg4f54h
title: Data from: Research Note: Possible influence of thermal selection on patterns of HSP70 and HSP90 gene polymorphisms in Thai indigenous and local chicken breeds and red junglefowls

description: The thermal stress caused by global climate change adversely affects the
 welfare, productivity, and reproductive performance of farm animals,
 including chickens, and causes substantial economic losses. However, the
 understanding of the genetic basis of the indigenous chicken adaptation to
 high ambient temperatures is limited. Hence, to reveal the genetic basis
 of thermal stress adaptation in chickens, this study investigated
 polymorphisms in the heat shock protein 70 (HSP70) and HSP90 genes, known
 mechanisms of cellular defense against thermal stress in indigenous and
 local chicken breeds and red junglefowls in Thailand. The result revealed
 seven alleles of the HSP70 gene. One allele exhibited a missense mutation,
 where an amino acid changed from Asn to His in the substrate-binding and
 peptide-binding domains, which is exclusive to the Lao Pa Koi chicken
 breed. Twenty new alleles with silent mutations in the HSP90 gene
 highlighted its greater complexity. Despite this diversity, distinct
 population structures were not found for either HSP70 or HSP90, which
 suggests incomplete impact on the domestication process and selection. The
 low genetic diversity, shown by the sharing of alleles between red
 junglefowls and Thai indigenous and local chicken breeds, aligns with the
 hypothesis that these alleles have undergone selection in tropical
 regions, such as Thailand. Selection signature analysis suggests the
 purifying selection of HSP70 for thermotolerance. This study provides
 valuable insights for enhancing the conservation of genetic resources with
 thermotolerant traits, which are essential for developing breeding
 programs to increase poultry production in the context of global climate
 change.
description: This data has been collected from the Illumina paired-end
 short-read sequencing. The raw sequences were then demultiplexed and
 processed by the AMPLISAS website to allele genotyping purposes. 
 <strong> </strong>
description: # Data from: Research Note: Possible influence of thermal selection on
 patterns of HSP70 and HSP90 gene polymorphisms in Thai indigenous and
 local chicken breeds and red junglefowls
 [https://doi.org/10.5061/dryad.tmpg4f54h](https://doi.org/10.5061/dryad.tmpg4f54h)  ## Description of the data and file structure This is a genotyping data of the HSP70 and HSP90 alleles in the Thai indigenous chicken breeds and red junglefowl. (HSP70_data.csv, HSP90_data.csv) This dataset also contained figures, tables, and supplementary tables and figures uploaded to Zenodo as Supplemental Information.  ## Sharing/Access information Allele sequences found in this study were deposited in the DNA Data Bank of Japan ([https://www.ddbj.nig.ac.jp/](https://www.ddbj.nig.ac.jp/), accessed on August 19, 2023) (accession numbers: LC775531– LC775537 and LC775538– LC775557). ## Code/Software N/a
DOI: 10.5061/dryad.brv15dvfn
title: Data from: The Phoridae of NE-Westphalia: A field study over five years, Part I. Genera except Megaselia Rondani

description: Contributing reliable data sets to support conservation efforts is
 currently the most important target of taxonomy and faunistics, yet the
 lack of statistically significant data makes unambiguous recommendations
 based on actual biodiversity mostly elusive. In particular, the abundance
 distribution of large and ecologically diverse groups as a prerequisite to
 assess regional differences is in general not available. In this study, a
 comprehensive faunistic record of Phoridae comprising about 290 species
 and more than 62000 specimens from a single location in NE-Westphalia
 caught over five years in a Malaise trap and occasionally by further
 methods is presented. The study will be distributed among two titles: I)
 Genera except Megaselia. II) Megaselia. This first part is devoted to 71
 species of Phoridae except Megaselia: their sex ratio, abundance
 distribution, rarefaction and a thorough presentation of rare species and
 species new to the area of investigation including annotations concerning
 morphology, ecology, distribution and used literature. Where feasible, a
 photo showing important characters has been added.
description: A Malaise trap has been operated for 5 years and Phoridae
 (Diptera) have been identified.
description: The Data are simple .csv files to be opened with every data sheet
 program. To run the script you'll need an R
 installation.
DOI: 10.5061/dryad.bzkh189g1
title: Morus Hyb-Seq data for: Phylogeny and biogeography of Morus (Moraceae)

description: The mulberry genus, Morus L. (Moraceae), has long been taxonomically
 difficult, and its species circumscription has only been defined recently.
 This genus comprises ca. 16 species distributed across Asia and the
 Americas, yet its biogeographic history remains poorly understood. In this
 study, we reconstructed the phylogeny and explored the biogeographic
 history of Morus using a combination of newly generated and previously
 published Hyb-Seq data. Our nuclear phylogeny recovered three
 well-supported geographic clades of Morus and showed that M. notabilis
 (China) is sister to the American clade plus the Asian clade. Multiple
 reticulation events among species of Morus and extensive incomplete
 lineage sorting (ILS) likely explain the difficulties in inferring
 phylogenetic relationships within the genus. Divergence time estimation
 indicated that Morus originated at the Eocene–Oligocene boundary, and
 current lineages started to diverge during the early Miocene, there is
 ambiguity surrounding the ancestral area with the two most likely regions
 being Sino-Himalaya or the Americas. Biogeographic inference and the
 fossil record suggest that Morus might have experienced extensive local
 extinction events during the Tertiary. Morus has expanded its
 distributional range through two dispersals from the Sino-Himalayan and
 Sino-Japanese regions to Southeast Asia. In summary, our new phylogenetic
 scheme and the biogeographic history presented here provide an essential
 foundation for understanding species relationships and the evolutionary
 history of Morus.
description: Phylogenetic data set based on Hyb-Seq.
DOI: 10.5061/dryad.s7h44j1cq
title: Periprandial changes in brain serotonergic system and food intake related neuropeptides

description: In this work, we assessed periprandial serotonin and 5-hydroxyindolacetic
 acid abundance in several brain areas of rainbow trout, in parallel with
 the evaluation of gene expression of tryptophan hydroxilase 1 and 2,
 neuropeptides involved in the central control of food intake, and the
 quantification of plasma glucose and cortisol. The results showed severe
 changes in serotonergic systems around mealtime, the most prominent being
 the increase in their activity just after food intake, suggesting that
 serotonin has a relevant role in relation to the daily timing of food
 intake, probably triggering satiety signals. In addition, a temporal
 adjustment of neuropeptide expression and plasma cortisol was found in
 relation to food intake, supporting its role in the regulation of feeding
 behaviour.
description: The data used in this work were obtained by HPLC coupled with
 coulochem detector, qPCR, ELISA and commercial spectrophotometric
 kits.
DOI: 10.5061/dryad.b5mkkwhjp
title: Identification and characterization of Western Province reef fisheries; Developing management and conservation protocols using traditional ecological knowledge, underwater monitoring and catch assessments

description: Solomon Islands has highly biodiverse coral reef ecosystems critically
 important to cultural identity and socio-economic security. Because
 Solomon Islanders maintain among the highest global fish consumption rates
 largely from inshore fisheries valued at USD$65 million yr-1, maintaining
 these resources is critical to livelihoods and health. Among these
 resources are coral reef fish that form (fish) spawning aggregations
 (FSA). For these species, FSAs are the primary means of population
 replenishment and form the basis of a trophic web ranging from
 detritivores to marine megafauna. FSAs are highly vulnerable to
 overfishing and in Solomon Islands have experienced increasing fishing
 pressure from a changing economy and a domestic export fishery. Recent
 estimates show Western Province exporting at least 6 mt mo-1 to Honiara
 markets, with an unknown but substantial quantity of this supply derived
 from FSAs. In Solomon Islands, marine tenure remains a core element of
 coral reef management, but its effectiveness relies on community awareness
 and participation in monitoring. The project seeks to improve
 site-based  and national scale enabling conditions for FSA
 management through: (1) evaluating FSA sites known to be experiencing
 fishing; (2) providing awareness presentations to traditional reef owners;
 (3) training local communities and dive operator staff in developing
 appropriate monitoring protocols; (3) implementing these protocols at
 known FSA sites; (4) co-developing EAFM plans with traditional reef owners
 and dive operators; (5) providing information sharing from successful
 regional LMMAs; (6) working to improve enforcement of existing FSA
 regulations and local and provincial scales; and (7) building consensus to
 adapt existing regulations to improve management effectiveness.
description: The datasets provided were collected by a team of Wildlife
 Conservation Society staff using standard techniques for underwater visual
 census, traditional ecological knowledge, and fish market monitoring, as
 catch assessments. The latter two activities were conducted using approved
 human subjects interview techniques with structured and semi-structured
 surveys. All interviews were conducted in a village setting. The combined
 datasets will be used for constructing one or more peer-reviewed
 scientific articles. Analyses are in their infancy, i.e. initial stages of
 analysis. 
description: The datasets can be opened and analyzed using Microsoft Excel or
 Numbers for Mac. Data can otherwise be coded for use in other analytical
 programs, such as R.
DOI: 10.5281/zenodo.18258297
title: Supplementary Material for 'Global land futures under values-based scenarios of the Kunming-Montreal Global Biodiversity Framework' (2020-2100)

description: This archive contains land system outputs from the PLUM module of LandSyMM (see here for the PLUM code; LandSyMM) that were generated for the paper 'Global land futures under values-based scenarios of the Kunming-Montreal Global Biodiversity Framework.' Future projections are provided for nine scenarios; these comprise a reference scenario (BAU), two sets of four NFF-aligned scenario variants (NfN, NFNl, NfS, NaC): Policy-Only (*_SSP2) scenarios apply nature-focused management constraints, and while Full scenarios extend the Policy-Only set by incorporating broader socioeconomic changes about, for example, trade policy and dietary transitions. All scenarios include consistent background conditions (e.g., GDP, population growth and climate trajectories). See paper for full scenario descriptions.

Each scenario folder contains comprehensive data about land cover and land use (gridded), food/timber demand and associated trade and prices (country-level). Full details can be found in README.

We also provide land cover projection downscaled from 0.5° to 0.01° using the LandScaleR algorithm (LandScaleR). Downscaled projections are provided for five Full scenarios: BAU, NfN_NfN, NfNl_NfNl, NfS_NfS, NaC_NaC, where LandScaleR was parameterised using the global-scale optimum parameter values. These are provided as GeoTiff files. Each file is named according to the corresponding future scenario and contains land cover at 2020 from HILDA+ version 2b, and downscaled future LULC projections from 2021 to 2100 for the given scenarios. The downscaled maps include seven land cover categories: urban, cropland, pasture/rangeland, managed forest, unmanaged forest, unmanaged grass/shrubland, and sparse/no vegetation.

We also provide spatial prioritisation maps for restored and conserved areas for each scenario value perspective (NfN, NfNl, NfS, NaC) aligned with KMGBF Targets 2 and 3 (T2 and T3). The union of T2 and T3 maps formed part of the parameterisation for the modelled scenarios. Full methodological description for the prioritisation procedure can be found in the paper. Full details of the files can be found in README.

This research was conducted as part of the Biofutures project (funded by DEFRA [International Biodiversity & Climate] under project C23386 – Development of biodiversity modelling and scenarios for the goals and targets of the Kunming-Montreal Global Biodiversity Framework; KMGBF).
DOI: 10.5281/zenodo.18258298
title: Supplementary Material for 'Global land futures under values-based scenarios of the Kunming-Montreal Global Biodiversity Framework' (2020-2100)

description: This archive contains land system outputs from the PLUM module of LandSyMM (see here for the PLUM code; LandSyMM) that were generated for the paper 'Global land futures under values-based scenarios of the Kunming-Montreal Global Biodiversity Framework.' Future projections are provided for nine scenarios; these comprise a reference scenario (BAU), two sets of four NFF-aligned scenario variants (NfN, NFNl, NfS, NaC): Policy-Only (*_SSP2) scenarios apply nature-focused management constraints, and while Full scenarios extend the Policy-Only set by incorporating broader socioeconomic changes about, for example, trade policy and dietary transitions. All scenarios include consistent background conditions (e.g., GDP, population growth and climate trajectories). See paper for full scenario descriptions.

Each scenario folder contains comprehensive data about land cover and land use (gridded), food/timber demand and associated trade and prices (country-level). Full details can be found in README.

We also provide land cover projection downscaled from 0.5° to 0.01° using the LandScaleR algorithm (LandScaleR). Downscaled projections are provided for five Full scenarios: BAU, NfN_NfN, NfNl_NfNl, NfS_NfS, NaC_NaC, where LandScaleR was parameterised using the global-scale optimum parameter values. These are provided as GeoTiff files. Each file is named according to the corresponding future scenario and contains land cover at 2020 from HILDA+ version 2b, and downscaled future LULC projections from 2021 to 2100 for the given scenarios. The downscaled maps include seven land cover categories: urban, cropland, pasture/rangeland, managed forest, unmanaged forest, unmanaged grass/shrubland, and sparse/no vegetation.

We also provide spatial prioritisation maps for restored and conserved areas for each scenario value perspective (NfN, NfNl, NfS, NaC) aligned with KMGBF Targets 2 and 3 (T2 and T3). The union of T2 and T3 maps formed part of the parameterisation for the modelled scenarios. Full methodological description for the prioritisation procedure can be found in the paper. Full details of the files can be found in README.

This research was conducted as part of the Biofutures project (funded by DEFRA [International Biodiversity & Climate] under project C23386 – Development of biodiversity modelling and scenarios for the goals and targets of the Kunming-Montreal Global Biodiversity Framework; KMGBF).