cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6hpb635xyf.1
title: Long-term follow-up on morbidity among women with a history of gestational diabetes mellitus: a systematic review

description: Background. Gestational diabetes mellitus (GDM) complicates up to 10% of pregnancies and is a well-known risk factor of type 2 diabetes mellitus (T2DM) and cardiovascular disease later in life, but little is known about the possible long-term risks of other diseases. The aim of this study was to review the literature for evidence of associations with morbidity other than T2DM and cardiovascular disease and with long-term mortality.
Methods. A systematic review based on searches in Medline, Embase and the Cochrane Library until 31st March 2021, using a broad range of keywords. We extracted study characteristics and results on associations between GDM and disease occurrence at least 10 years postpartum, excluding studies on women with DM prior to pregnancy or only DM prior to outcome The results are reported according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA), and the Newcastle-Ottawa Scale (NOS) was used to assess risk of bias.
Results. We screened 3,084 titles, 81 articles were assessed full-text, and 15 were included in the review. The strongest evidence for an association was found for kidney diseases, particularly in black women. We found indication of an association with liver disease, but possibly restricted to women who had developed DM postpartum. The association between GDM and breast cancer had been studied extensively, but in most cases based on self-reported diagnosis and with conflicting results. Only sparse and inconsistent results were found for other cancers. No study on thyroid diseases was found, and no study reported on short-term or long-term mortality in women with a history of GDM.
Conclusion. Given the frequency of GDM, there is a need for better evidence on possible long-term health consequences. In particular, studies based on comprehensive records of diagnosis of both GDM, and long-term health outcomes are warranted.
DOI: 10.17632/24c9mb6pf9.2
title: HEJ 2.1: High-energy resummation with vector bosons and next-to-leading logarithms

description: We present version 2.1 of the High Energy Jets (HEJ) event generator for hadron colliders. HEJ is a Monte Carlo generator for processes at high energies with multiple well-separated jets in the final state. To achieve accurate predictions, conventional fixed-order perturbative QCD is supplemented with an all-order resummation of large high-energy logarithms. The new version 2.1 now supports processes with final-state leptons originating from a charged or neutral vector boson together with multiple jets, in addition to processes available in earlier versions. Furthermore, the all-order resummation is extended to include an additional gauge-invariant class of subdominant logarithmic corrections. HEJ 2.1 can be obtained from https://hej.hepforge.org.
DOI: 10.17632/3v4bkmg92x.1
title: Secondary siRNA screen (5-ethynyl uridine RNA metabolic labelling)

description: Secondary image-based genetic screen targeting 463 genes in human HeLa cells using RNA interference (siRNA), as described in Berry et al, 2021. Cells incubated with 5-ethynyl uridine (5-EU) for 30min before fixation. Nascent RNA detected by click reaction with AlexaFluor488-azide. Other stains: DAPI (DNA), proliferating cell nuclear antigen (PCNA), succinimidyl ester AlexaFluor647 (total protein). Cells fixed 72h after siRNA transfection. Imaged at 20X magnification with two experimental replicates per condition. Further description available in Berry et al., 2022. Single-cell features provided as background-subtracted mean and sum intensity values for the nucleus, cytoplasm, or whole-cell, as appropriate, for each fluorescence channel. Cell-cycle (G1/S/G2) annotation using a classifier trained using PCNA and DAPI features on EdU-incubated cells, as described in the manuscript. Data cleanup and correction applied as described in the manuscript. Summaries provided on a per-well basis.
DOI: 10.17632/bz4jfc2mj4.1
title: Semantic Similarity with Concept Senses

description: This dataset represents the results of the experimentation of a method for evaluating semantic similarity between concepts in a taxonomy.
The method is based on the information-theoretic approach and allows senses of concepts in a given context to be considered.
Relevance of senses is calculated in terms of semantic relatedness with the compared concepts.
In a previous work [9], the adopted semantic relatedness method was the one described in [10], while in this work we adopted the one described in [11]. 
This results in an improvement of the method.
The dataset is composed of two folders, which contain the results of the previous and the new experimentation, respectively. 
In particular, in each folder there is a set of files, each referring to one pair of the well-known Miller and Charles benchmark dataset [1] for assessing semantic similarity.
For each pair of concepts, all the 28 pairs are considered as possible different contexts. 
We applied our proposal by extending 7 methods for computing semantic similarity in a taxonomy, selected from the literature.
The methods considered in the experiment are referred to as (R[2], W&P[3], L[4], J&C[5], P&S[6], A[7], A&M[8]):

REFERENCES
[1] Miller G.A., Charles W.G. 1991. Contextual correlates of semantic similarity. Language and Cognitive Processes 6(1).
[2] Resnik P. 1995. Using Information Content to Evaluate Semantic Similarity in a Taxonomy. Int. Joint Conf. on Artificial Intelligence, Montreal.
[3] Wu Z., Palmer M. 1994. Verb semantics and lexical selection. 32nd Annual Meeting of the Associations for Computational Linguistics.
[4] Lin D. 1998. An Information-Theoretic Definition of Similarity. Int. Conf. on Machine Learning.
[5] Jiang J.J., Conrath D.W. 1997. Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy. Inter. Conf. Research on Computational Linguistics.
[6] Pirrò G. 2009. A Semantic Similarity Metric Combining Features and Intrinsic Information Content. Data Knowl. Eng, 68(11).
[7] Adhikari A., Dutta B., Dutta A., Mondal D., Singh S. 2018. An intrinsic information content-based semantic similarity measure considering the disjoint common subsumers of concepts of an ontology. J. Assoc. Inf. Sci. Technol. 69(8).
[8] Adhikari A., Singh S., Mondal D., Dutta B., Dutta A. 2016. A Novel Information Theoretic Framework for Finding Semantic Similarity in WordNet.  CoRR, arXiv:1607.05422, abs/1607.05422.
[9] Formica A., Taglino F. 2021. An Enriched Information-Theoretic Definition of Semantic Similarity in a Taxonomy. IEEE Access, vol. 9.
[10] Schuhmacher M., Ponzetto S. P. 2014. Knowledge-based Graph Document Modeling. 7th ACM International Conference on Web Search and Data Mining.
[11] Passant, A., “Measuring Semantic Distance on Linking Data and Using it for Resources Recommendations”, AAAI Spring Symposium Series (2010).  

Finally, in each file, the Pearson's and the Spearman's correlations of our proposal with respect to human judgement is reported.
DOI: 10.17632/s6y4yzssy6.1
title: In situ Soil Fractions (Sand, Silt and Clay Percentage) and pH Data at Sample Sites in Arid Region of India

description: The data presented here consists percentage of sand, silt, clay and pH at surface (~5cm) and subsurface (~5-15cm)  at various sample locations in arid region of Great Indian Thar Desert falling in Rajasthan state of India. Mainly, the samples collected falls in four districts namely, Jaisalmer, Bikaner, Nagaur, and Jodhpur. 

A total of 24 soil samples, each with ~2 kg weight were collected at surface (~ 5 cm depth) and subsurface (between 5-15 cm depth) in the sample locations. The samples were randomly selected but ensured to be well distributed with a rationale that the sample site is having minimum of 5 ha of homogeneous signature with respect to soil texture variation as appeared from satellite imagery. Care was taken while selecting sampling locations such at that it won’t have any litter deposition or weed growth. Locations with excessive moisture content were also avoided. Also, the samples are chosen such that the landscape contains sparse vegetation and avoided sand dunes due to their potential to participate in aeolian process. Predominantly, species like Calligonum polygonoides, Aerva persica, Citrullus colocynthi, Prosopis Juliflora, Ziziphus mauritiana, Prosopis cineraria and Fagonia bruguieri were found in this landscape. Out of 24 samples, in one location we are unable to collect subsurface soil as there is bedrock after at a depth of 6 cm.
DOI: 10.17632/p5n69kcdk2.1
title: High-spatial-resolution surface soil moisture retrieval using the Deep Forest model in the cloud environment over the Tibetan Plateau

description: Part of the study codes and the original retrieval images.
DOI: 10.17632/bkdpt2zpbd.1
title: Stretch and pinch tests to assess the suitable management for acne rolling scars

description: Demonstration of stretch and pinch tests with corresponding ultrasound examination

The acne rolling scar on the right medial zygoma showing a dimple sign in a pinch test and an uneven sign in a stretch test. The ultrasound examination of the acne rolling scar at rest showed a homogenous band (red box) disrupting and blurring the clear dermoepidermal junction and the junction between the dermis and the subcutaneous fascia. The irregularity of the skin surface was more evident after pinching and the homogenous blurring persisted after stretching, corresponding to a dimple sign and an uneven sign, respectively.
Red line, dermoepidermal junction; Yellow line, junction between the dermis and the subcutaneous fascia
DOI: 10.17632/7245rfpw2g.1
title: LINF_270024400

description: Tubulin cofactor C domain-containing protein 1 | TBCCD1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/gf6xnkb5tw.1
title: Ecoefficency-and-Climate-data

description: It is a CSV file containing the data of 32 municipalities of Puebla related to the variables used for the Eco-efficiency and climate determinants exercise.
DOI: 10.17632/m3rgr436g6.1
title: LINF_270025000

description: glycosomal phosphoenolpyruvate carboxykinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/66wd3n7f3v.1
title: LINF_270024800

description: protein kinase-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mbhhsbzscg.1
title: LINF_270024900

description: glycosomal phosphoenolpyruvate carboxykinase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2jkrgwrtft.1
title: Comparative transcriptome analysis on heart of Eriocheir sinensis under different molting stages

description: Comparative transcriptome analysis on heart of Eriocheir sinensis under different molting stages
DOI: 10.17632/6hw3vm8ngr.1
title: LINF_270024600

description: casein kinase I-like protein | CK1.4
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5c74mnmdb3.1
title: The Bovine Salivary Proteome

description: This file contains information on analysis of the bovine salivary proteome. The excel sheets include and summary describing the laboratory analysis and database search, ID of technical replicates, information of analysis for each technical replicate, and the summarized/compiled raw abundance data measured for samples from all cows.
DOI: 10.17632/xgwb62nznh.2
title: Identification of nuclear partners of STING

description: Human HEK293T cells were transfected with a STING-GFP or a NLS-GFP (referred to as 'mock' control) expression plasmid, and the nuclear envelope protein fraction isolated and analysed by mass spectrometry to identify the nuclear pool of STING interactors. Two runs were performed for each condition.
These data are described in Dixon et al. (2021) iScience (PMID: 34541469).
DOI: 10.17632/dkcfwxzc4d.2
title: Supporting Information to Oligocene/early Miocene E/W-shortening in the Oman Mountains related to oblique Arabia-India convergence

description: This data set contains information about field measurements and U-Pb on calcite measurements of "Oligocene/early Miocene E/W-shortening in the Oman Mountains related to oblique Arabia-India convergence"
DOI: 10.6084/m9.figshare.19733290.v1
title: GSE130020

description: 3 Ewing sarcoma patient-derived xenografts (PDXs) samples.
DOI: 10.17632/pg9fz3vrm4.1
title: wave_data_transformer_3

description: Trinity Smart Grid. You will need Python 3.7 environment with these supporting libraries

colorama        0.4.4 
cycler          0.10.0
h5py            3.3.0
intel-openmp    2021.3.0
kiwisolver      1.3.1
matplotlib      3.4.3
mkl             2021.3.0
mkl-service     2.4.0
numexpr         2.8.1
numpy           1.21.2+mkl
packaging       21.3
pandas          1.3.2
Pillow          8.3.1
pip             21.3
psycopg2        2.9.1
pyparsing       2.4.7
pyserial        3.5
python-dateutil 2.8.2
pytz            2021.1
PyWavelets      1.1.1
scipy           1.7.1
setuptools      56.0.0
six             1.16.0
tables          3.7.0
tbb             2021.3.0
tqdm            4.62.2
DOI: 10.17632/pzkxkzp2nd.2
title: A Study of Induced phase separation of mutant NF2 imprisons cGAS-STING machinery to abrogate antitumor immunity. Fansen Meng et al.

description: Unprocessed and uncompressed imaging data for manuscript "Induced phase separation of mutant NF2 imprisons cGAS-STING machinery to abrogate antitumor immunity".
DOI: 10.17632/r9s6bkmmyg.1
title: Data from: Interprofessional Education at a Brazilian public university - a document analysis 

description: Considering the need to prepare health care students for interprofessional collaborative work, Interprofessional Education (IPE) should be incorporated into course curricula. For this, it is not necessary to create new curricula, but to restructure what is already being done. This dataset refers to the research that aimed to analyze the curricula of undergraduate health courses from the perspective of Interprofessional Education in a Brazilian public university. 
The curricula were accessed through the university's academic system. Thirteen curricula were analyzed, and the data were collected by two researchers together in the year 2021. The data were analyzed using content analysis, in the thematic modality (Minayo et al., 2016).
Data extraction was based on an adapted quality assessment guide for IPE in the educational context (Barr, 2003). Data organization was done in tables in Microsoft Excel and Word programs.  The "highligth" feature was used to color similar themes and categories. 
Each curriculum was analyzed individually, following the steps of: extraction of significant themes (literal excerpts), grouping of themes with similarity and establishment of initial categories by grouping excerpts, establishment of intermediate categories and, finally, final categories. A total of 37 categories emerged from the individual curriculum analysis.
The categories of each analyzed curriculum were grouped by similarity, emerging it big final categories. From the 37 categories, three final categories composed the research emerged: "Curricular organization and interprofessionalism", Education guided by social reality and health needs", and "Learning for interprofessional action". In the category "Curricular organization and interprofessionalism" the courses do not present free periods in the curriculum, with space for optional subjects in different periods. In the category "Education guided by social reality and health needs", the courses propose an education based on patients' health needs in the Brazilian public health system. In the category "Learning for interprofessional action" the term "multiprofessional" characterizes learning to work in teams, with a discrete number of interprofessional disciplines.
DOI: 10.6084/m9.figshare.19733290
title: GSE130025

description: 3 Ewing sarcoma patient-derived xenografts (PDXs) samples.
DOI: 10.6084/m9.figshare.19733290.v2
title: GSE130020

description: 3 Ewing sarcoma patient-derived xenografts (PDXs) samples.
DOI: 10.17632/vyppm28y5p.1
title: LINF_270025100

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ssf3xs26vz.1
title: LINF_270025400

description: paraflagellar rod protein 5 | PFR5
Leishmania infantum (strain JPCM5)
DOI: 10.17632/tnythm53rz.1
title: LINF_270025600

description: trypanothione synthetase (TRYS)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/ckhxbtd5rg.1
title: LINF_270025800

description: endo/exonuclease Mre11
Leishmania infantum (strain JPCM5)
DOI: 10.17632/9285s7vpch.1
title: LINF_270025900

description: mitoribosomal protein mS49
Leishmania infantum (strain JPCM5)
DOI: 10.17632/2zg8nty84b.1
title: Officer et al_Application of the double-difference relocation method to acoustic emission events in high-pressure deformation experiments_waveforms

description: Found here are the raw waveforms for Officer et al. "Application of the double-difference relocation method to acoustic emission events in high-pressure deformation experiments"
Acoustic emissions were collected using piezoelectric sensors during a high pressure/high temperature deformation experiment in the D-DIA. Acoustic emissions were generated from transformational faulting of a Mg2GeO4 sample at high pressure and temperature.
The waveforms are in .atf (ascii) format or SAC format
DOI: 10.17632/dfhdfm8gmy.1
title: Broadly recognized, cross-reactive SARS-CoV-2 CD4 T cell epitopes are highly conserved across human coronaviruses and presented by common HLA alleles. Becerra-Artiles et al.

description: Sequence homology between SARS-CoV-2 and common-cold human coronaviruses (HCoVs) raises the possibility that memory T cells elicited to prior HCoV infection can impact response in COVID-19. We studied T cell cross-reactivity between SARS-CoV-2 and HCoVs by measuring responses to SARS-CoV-2 S protein in convalescent COVID-19 donors, mRNA COVID-19 vaccine recipients, and individuals not exposed to SARS-CoV-2. We expanded T cell lines from SARS-CoV-2 donors in vitro by stimulation with HCoV S peptides, which enriches for cross-reactive T cells. We found that SARS-CoV-2 spike sequence S811-831 dominated the cross-reactive response. S811-831 is highly conserved across SARS-CoV-2 variants, and human and animal coronaviruses. Most donors tested recognized S811-831, including severe and mild COVID-19 donors, individuals receiving mRNA vaccines, and previously unexposed donors, although most unexposed donors required in vitro expansion to detect these cross-reactive cells.
We defined minimal epitopes within S811-831 as well as the presenting HLA alleles. We identified two major reactivity patterns, with an N-terminal epitope RSFIEDLLF S815-823 presented by DQ5 (DQA1*01:01/DQB1*05:01), and a partially overlapping C-terminal epitope IEDLLFNKV S818-826 presented by DP2 (DPA1*01:03 DPB1*02:01) and DP4 (DPA1*01:03/DPB1*04:01). The broad recognition of these epitopes is driven in part by the prevalence of the presenting HLA alleles, particularly DP4, which is the most common allele worldwide.
T cells recognizing S811-831 were cross-reactive for HCoV homologous sequences. The key to this cross-reactive recognition seems to be the remarkable conservation across coronaviruses of amino acids at expected T cell contact positions for both the DQ5 and DP4 binding frames. The selection for DP4 and DQ5 as preferred presenting elements for cross-reactive recognition may be related to their binding motifs, which accommodate peptide sequence variability while still presenting identical residues for TCR recognition. 
T cells cross-reactive for both SARS-CoV-2 and HCoVs comprise a small fraction of the overall response in both pre-pandemic and COVID-19 donors. The responses were characterized by a highly diverse TCR repertoire, mainly specific to individual donors with a few public clonotypes. 
Table S1 shows the demographic, clinical, serological, and HLA typing of the donors used in the study. Table S2 shows a summary of immunological assays performed on T cell clones. Table S3 summarizes the MHC binding prediction on 3 candidate cross-reactive epitopes. Table S4 lists the selected coronaviruses used for the conservation analysis. Table S5 provides information on the TCR clonotypes identified in different samples and the analysis of sequence sharing among samples. Table S6 provides the results from the GLIPH algorithm applied to our data. Table S7 lists sequences of synthetic peptides used throughout the study.
DOI: 10.17632/bdn453nyyv.1
title: eggplant : SCOG : data

description: This repository contains the observed and analyzed data used in the tutorial on eggplant given at the SCOG workshop 2022-05-24 (www.singlecell.de/index.php/events/scog-virtual-workshop-spatial-transcriptomics-data-analysis-in-python/).

All data is contained within the data.zip folder. The zip file is password-protected. The password is distributed to all the workshop participants.

The password will be shared with other individuals upon reasonable request.
DOI: 10.17632/44mrcz7n7p.1
title: Evaluation of mass transfer in packed column for competitive adsorption of Tartrazine and Brilliant Blue FCF: A statistical analysis

description: Results obtained for the response variables (qt, qu, MTZ, SAS) of the competitive adsorption process in a fixed-bed column of dyes B1 and Y5 on the RH, calculated from the data relating to the breakthrough curves
DOI: 10.17632/58984z3dr3.1
title: Ren, Jinfeng(2022)

description: 1. Synthetic seismogram using the Logging-While-Drilling (LWD) P-wave velocity and bulk density logs at Site Well A and a seismic wavelet extracted from the 3-D near-well seismic data volume.
2. Internal deformation within the MTD_3 from statistical graph of true dip and azimuth. Four subunits were identified from different change of dip and azimuth extracted from static (left) and dynamic (right) resistivity-at-bit (RAB) images around borehole.
3. Core images from the selected intervals of Well A for the unconsolidated sandy substrate and semi-consolidated block. 
4.Morphology of peel-back scours
DOI: 10.6084/m9.figshare.19734022
title: GSE146771

description: 18 colorectal cancer patients. All patients except 5 had paired tumor and adjacent normal samples obtained.
DOI: 10.17632/34ngdmc5yn.1
title: Data for: Detection and quantification of prostaglandin E2 in saliva utilizing microextraction by packed sorbent and liquid chromatography-tandem mass spectrometry

description: Analysis method conditions for detection in saliva samples for PGE2 by LCMS/MS_“Online Resource 1”
Calibration curve with known standard concentrations for analyzing PGE2 concentrations in saliva samples_“Online Resource 2”
DOI: 10.17632/hh42swfh9w.2
title: Dataset of pollination traits in Fabales

description:  This the largest morphological dataset constructed for Fabales to date, and the data presented  can be used for morphology, biogeography, ancestral state, ancestral area analyses of any Fabales clades. The dataset is related to Aygoren Uluer et al. 2022 (https://bmcecolevol.biomedcentral.com/articles/10.1186/s12862-022-02003-y)
DOI: 10.17632/wb9gs6khzf.1
title: Knowledge Management System Development in a Logistics Company

description: In this paper, the question of the formation of a knowledge management system in a logistics company is investigated. Knowledge management allows companies to achieve their strategic goals, such as: increasing competitiveness and performance, increasing market share, increasing revenue and profitability. To enable the organization to achieve its objectives in the current market conditions. To do this, the company should create a management system in which knowledge becomes the main resource. Recommendations have been developed for the implementation of a knowledge management system for the company in question, and the result is that after the introduction of the system into the existing business model, according to the forecast, the productivity of employees will increase. Thus, the proposed knowledge management system through the formation and accumulation of competencies will lead to an increase in the efficiency of the company.
DOI: 10.34740/kaggle/dsv/3652433
title: Character