cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/ellxjf
title: Answers to a survey about perceptions of mobility

description: This dataset contains answers to a survey about mobility perceptions, that was run online (Framaform) during March-July 2023.
DOI: 10.57745/enhw7m
title: High-frequency measurements of 7 major ions concentrations during discharge events in the Kervidy-Naizin and Strengbach catchments (2018-2022)

description: This data set includes sub-hourly measurements of major ions concentrations and discharges for a selection of storm-events in two French critical zone observatories. The variables have been measured at the outlet of Kervidy-Naizin catchment in AgrHyS observatory (Fovet et al., 2018) and the outlet of Strengbach catchment in the “Observatoire Hydro-Geochimique de l’Environnement” (Pierret et al., 2018). Major ion concentrations have been measured using experimental prototypes of field laboratory called “Riverlabs” (Floury et al., 2017; Brekenfeld et al., submitted). The filtered water was analysed by a Dionex ICS-5000 Ion Chromatography system (Thermo Scientific) for the major cations (Na+, Mg2+, K+, Ca2+) and anions (Cl-, NO3-, SO42) every 35 to 45 minutes at Kervidy-Naizin and every 20 to 30 minutes at Strengbach. Stream discharge at both sites was estimated at the catchment outlets every minute (Kervidy-Naizin) and every 2 minutes (Strengbach) based on long-term, well-established rating curves and continuous water level monitoring. The data sets includes all data used in the analysis published in Brekenfeld et al. (2024) which correspond to 62 rainfall-discharge events identified based on discharge variations and for which all concentrations data have been validated (no technical issue, no maintenance operation during the events) between June 2018 and August 2022. Details related to the monitoring protocol are provided in Brekenfeld et al. (2024) in the Material section.
DOI: 10.57745/eoakka
title: Quantitative sodium MRI in carrots

description: The images presented in this dataset are quantitative sodium MRI scans. They allow for a comparison of sodium distribution in a real food product, the carrot, under three different salting methods: salting in water, and surface salting using either fine salt or fleur de sel. These images also enable the quantification of heterogeneities and their evolution over time after salting, across a 4.5-hour period. The data may be useful to anyone interested in salt distribution, whether from a nutritional standpoint or for food product design. In the article in which these data were used, the objective was to demonstrate differences in heterogeneity between the three salting methods. This heterogeneity is particularly important, as it has been shown to modulate the perception of saltiness. These data can be reused to complement other sodium distribution maps, whether in different food products or under different salting conditions. The data were acquired using the AgroResonance platform, as part of the Sal&Mieux project funded by the ANR (ANR-19-CE21-0009). The images are sodium nucleus MRI scans acquired at 9.4T at room temperature. The sequence used is a Spiral, and the protocol implemented included correction for RF field (B1⁺) inhomogeneities. Their spatial resolution is 0.5×0.5×5 mm. All of this information is detailed in the article published in Food Research International: "Impact of salting practices on sodium distribution in carrots assessed by quantitative MRI" https://doi.org/10.1016/j.foodres.2025.116351 .
DOI: 10.57745/eucme2
title: Agro-residues pre-treatment for proteins and peptides content

description: FHNW performed the pretreatment of tomato extracts for the extraction of peptides and proteins of interest which can be further used for nutraceuticals applications as well as cosmetics. For that, alkaline conditions were applied followed by the use of enzymatic cocktails. FHNW developped magnetic immobilized enzymes with trypsin and bromelain that can be used for the extraction rather than enzyme free only.
DOI: 10.57745/ek4ffp
title: Estimation of body and carcass composition of crossbred growing bulls from 11th rib dissection

description: Data were used for the manuscript "Estimation of body and carcass composition of crossbred growing bulls from 11th rib dissection". Authors: S. Lerch, I. Morel, F. Dohme-Meier, Y. Le Cozler, C. Xavier
DOI: 10.57745/enha9p
title: DQI Matrix for AGRIBALYSE

description: Ce fichier présente à la fois la méthodologie de calcul appliquée par AGRIBALYSE® pour la note de qualité DQR (Data Quality Ratio) ainsi que la matrice de notation des DQI (Data Quality Index) pour chaque étape du cycle de vie du produit.
DOI: 10.57745/eraxea
title: données pour Characterisation of phenolic compounds and polysaccharides in strawberry: Cultivar and harvest effects and their correlation with nectar colour stability

description: This data set contains the phenolic compounds and cell wall content and composition and color data used to produce the paper "Characterisation of phenolic compounds and polysaccharides in strawberry: Cultivar and harvest effects and their correlation with nectar colour stability" as a part of the HiStabJuice Project.
DOI: 10.57745/ew6bso
title: Phosphoproteomics data from Baudouin et al. (2022).

description: Phosphoproteomics dataset generated by Baudouin et al. (2022). The experimental design is described in the attached publication.
DOI: 10.57745/eyuhzg
title: If / Taxus baccata /

description: Fichier d'impression 3D d'anatomie du bois d'if file for 3D printer : anatomy of Taxus baccata wood
DOI: 10.57745/fhn46i
title: Shape files LL France

description: Shape files for Living Lab Forêts de Boçage, Les Landes, France
DOI: 10.57745/fncqud
title: 35 ans de suivi individuel de la croissance en circonférence sur un dispositif expérimental de Cedrus atlantica Manetti soumis à différentes intensités et fréquences d’éclaircie

description: Ces données dendrométriques correspondent à une série temporelle de circonférences individuelles mesurées à hauteur de poitrine sur un dispositif expérimental de Cèdre de l’Atlas. Ce dispositif, situé à 1170 m d’altitude, a été installé en 1989 par l’INRAE en Forêt Domaniale du Ventouret, proche d’Avignon (84) en relation avec l’Office National des Forêts gestionnaire de celle-ci. Il se trouve sur une roche mère calcaire du Barrémien (Crétacé) . Ce dispositif vise à étudier l’effet de la sylviculture sur la croissance et la production d’un peuplement de cèdre de l’Atlas, réguliers, purs et équiennes soumis à des intensités et des fréquences d’éclaircie différentes. Ce dispositif s’inscrit dans un réseau plus large, le « Réseau Sylviculture Cèdre INRAE » (RSCI) identifié comme tel dans l'Infrastructure Nationale de Recherche (IR) "In-Sylva France". Les différents traitements d’éclaircie vont de la modalité témoin sans intervention jusqu’à la modalité très forte dont l’intensité va au-delà de ce qui est pratiqué en gestion. En pratique, les arbres de ce dispositif sont identifiés et cartographiés, et font donc l'objet d'un suivi individuel de la croissance en circonférence à 1,30 m lors des inventaires annuels en plein à l’aide de ruban de mesure . Outre le fichier de données lui-même, la publication contient (1) Un fichier « readme » qui contextualise les données : informations générales, informations méthodologiques, aperçus des données et fichiers (2) Des métadonnées d’exploitation : un dictionnaire des données qui explicitent les variables du fichier de données (3) Les métadonnées de découvertes avec des fichiers ou documents associés : mode opératoire, plan du dispositif, publications.
DOI: 10.57745/gjxagj
title: Mitobese_COLON

description: 16S sequence fasta file of the colonic microbiota data and associated metadata of the study by Guerbette et al where mice were fed two different obesogenic diets and control diets.
DOI: 10.57745/grhrzj
title: Dry powders reflectance model based on enhanced backscattering: case of hematite α - Fe_2 O_3

description: Data associated to the paper entitled: Morgane Gerardin, Pauline Martinetto, and Nicolas Holzschuch, "Dry powders reflectance model based on enhanced backscattering: case of hematiteα–Fe2O3," J. Opt. Soc. Am. A 40, 1817-1830 (2023) The appearance of materials is described by a function known as the Bidirectionnal Reflectance Distribution Function (BRDF). This function can be acquired through gonio-spectrophotometry, by measuring the scattering of light by a sample of study for multiple illumination directions and multiple observation directions. When it comes to the scattering of light in the back scattering direction (illumination and observation directions are coincident), a specific instrument allowing such configuration to be measured is required. This dataset provides complete BRDF measurements data acquired on numerous dry hematite powders, with different color and different grain morphology. The main part of the BSDF is measured using the Gonio-spectrophotometer SHADOWS (IPAG), and the back scattering is measured using an instrument designed at Institut Néel. These data were collected in the context of the Cross Disciplinary Program Patrimalp, supported by the French National Research Agency in the framework of the Investissements d’Avenir program (ANR-15-IDEX-02). See README file for a complete description of the available data.
DOI: 10.57745/esqfdb
title: Scripts used for data analyzing in the manuscript: “Unraveling genetic load dynamics during biological invasion: insights from two invasive insect species”

description: The scripts were used for data analyzing in the manuscript: “Unraveling genetic load dynamics during biological invasion: insights from two invasive insect species” Authors: Eric Lombaert, Aurélie Blin, Barbara Porro, Thomas Guillemaud, Julio S. Bernal, Gary Chang, Natalia Kirichenko, Thomas W. Sappington, Stefan Toepfer and Emeline Deleury The scripts were used on pool-seq data. Raw reads have been deposited in Sequence Read Archive, National Center for Biotechnology Information, under BioProject PRJNA1079689: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1079689 The scripts allow (i) trimming and mapping of raw reads, (ii) calling of SNP polymorphisms across multiple populations, (iii) annotation of SNPs, (iv) polarisation of alleles, and (v) comparison of genetic load between different populations. The scripts were successfully executed on a Debian 9.13 system with a Linux kernel version 4.9.0-7-amd64. The processor used was an Intel(R) Xeon(R) CPU E7540 at 2.00GHz, featuring 24 physical cores and 48 threads across 4 sockets. The machine had 128 GB of RAM and utilized a 2 TB hard drive for storage. Running all the scripts with this configuration takes one to several weeks. The main software used by the various scripts are: FastQC v0.11.5 (Andrews, 2010), Trimmomatic v0.35 (Bolger et al., 2014), bwa-mem v0.7.15 (Li, 2013), SAMtools v1.15.1 (Li et al., 2009), freebayes v1.3.6 (Garrison & Marth, 2012), bcftools v1.13 (Danecek et al., 2021), SnpEff v5.0 (Cingolani et al., 2012), est-sfs v2.03 (Keightley & Jackson, 2018) and R v4.2.2 (R Core Team, 2021). All the provided scripts have been executed for Diabrotica virgifera virgifera. The numbering at the beginning of each script is intended to facilitate chronological use.
DOI: 10.57745/fjflyb
title: Size effects in the toughening of brittle materials by heterogeneities: a non-linear analysis of front deformations

description: This repository regroups the data associated with the preprint Size effects in the toughening of brittle materials by heterogeneities: a non-linear analysis of front deformations by Mathias Lebihain, Manish Vasoya, and Véronique Lazarus. It contains all the script required to generate the data and produce the figures of Sections 3 and 4. Sections 1, 2, and 5 do not use any data set. All comments or questions are welcomed at mathias.lebihain@enpc.fr.
DOI: 10.57745/fjryi1
title: Estimation of contemporary effective population size in plant populations: limitations of genomic datasets - Fagus sylvatica supporting information

description: Effective population size (Ne) is a pivotal evolutionary parameter with crucial implications in conservation practice and policy. Genetic methods to estimate Ne have been preferred over demographic methods because they rely on genetic data rather than time-consuming ecological monitoring. Methods based on linkage disequilibrium, in particular, have become popular in conservation as they require a single sampling and provide estimates that refer to recent generations. A recently developed software based on linkage disequilibrium, GONE, looks particularly promising to estimate contemporary and recent-historical Ne (up to 200 generations in the past). Genomic datasets from non-model species, especially plants, may present some constraints to the use of GONE, as linkage maps and reference genomes are seldom available, and SNPs genotyping is usually based on reduced-representation methods. In this study, we use empirical datasets from four plant species to explore the limitations of plant genomic datasets when estimating Ne using the algorithm implemented in GONE, in addition to exploring some typical biological limitations that may affect Ne estimation using the linkage disequilibrium method, such as the occurrence of population structure. We show how accuracy and precision of Ne estimates potentially change with the following factors: occurrence of missing data, limited number of SNPs/individuals sampled, and lack of information about the location of SNPs on chromosomes, with the latter producing a significant bias, previously unexplored with empirical data.
DOI: 10.57745/fohrhy
title: Literature data compilation of sidestream characteristics in water resource recovery facilities

description: This dataset presents the characteristics of sidestreams that result from the settling, thickening and dewatering of sewage sludge. These data have been collected from the scientific literature and all available characteristics (volume and concentrations of different components) have been included. The origin of the data is systematically presented. The collected dataset is organised by source of sidestreams: thickening of primary sludge, thickening of biological sludge, dewatering of digested sludge, dewatering of digested sludge pretreated through a thermal hydrolysis process. More information about the configuration of the water resource recovery facilities (WRRFs) are provided when available: secondary treatment type, specific phosphorus treatment type and dewatering or thickening equipment. This dataset allows the calculation of statistical information for each observed characteristic. These data can be useful to researchers, engineers and WRRF operators because they are scarce at full-scale. This dataset can be an easy-to-use resource for improving knowledge about sidestream characteristics.
DOI: 10.57745/fp7rpi
title: CLIMAE bibliometric dataset 2010-2021

description: 4230 WOS scientific articles and reviews matching the CLIMAE bibliometric query (see https://hal.science/hal-04762738) , identified with the following fields : DOI, Authors, Title, date, journal, authors affiliation, authors keywords, abstract… Articles dealing both with climate adaptation and climate mitigation in the fields of forest, agriculture, food, and water management, agro-ecology, food and global health, biodiversity, bioeconomy, climate change and risks, societies and territories. These areas correspond to the research fields of the French National Research Institute for Agriculture, Food and the Environment (INRAE).
DOI: 10.57745/fthdn2
title: RPG complété 2021 Région Auvergne

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de l’ancienne région Auvergne (03, 15, 43, 63). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023
DOI: 10.57745/fzm6vy
title: Video results of low-level systemc model of growing neural gas (GNG)

description: MP4 30 seconds video results of a low-level SystemC model of Growing Neural Gas using a NoC-based scalable framework. To keep the 30 seconds time length with varying number of images, varying framerates are used. Feel free to slow/speed up/pause the video.
DOI: 10.57745/gz1ms7
title: RPG complété 2018 département 22

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 22. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/h2jvkz
title: RPG complété 2021 Régions Alsace et Lorraine

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements des (anciennes) régions Alsace et Lorraine (54, 55, 57, 67, 68, 88). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023
DOI: 10.57745/h6wpus
title: Genomic prediction in a multi-generation Eucalyptus globulus breeding population.

description: This dataset contains data used in the article "Genomic prediction in a multi-generation Eucalyptus globulus breeding population." Haristoy et al. 2022
DOI: 10.57745/iau0uk
title: Data associated with the article "Mode-locked waveguide polariton laser"

description: This archive contains all raw datasets corresponding to each figure of the article "Mode-locked waveguide polariton laser", by H. Souissi et al. The arxiv version of the article is available here: https://arxiv.org/abs/2310.18661 A sub-folder is associated to each figure (including the figures of the Supplemental Document), with the .csv files for each panel of the figure.
DOI: 10.57745/fpsh2t
title: Feeding and growth dataset of Gilthead Seabream (Sparus aurata) fed with local shellfish in diets of juvenile

description: The data were collected from an experiment carried out on juveniles of Gilthead Seabream (Sparus aurata), reared in a Recirculating Aquaculture System composed of three fish tanks. Gilthead seabream were fed three treatments, one per tank: a control commercial feed (with fishmeal and fish oil) (C), a plant-based feed (P), or P + fresh mussel flesh (M). The dataset presented is composed of: 1. Individual fish growth parameters (live weight, length at fork, Fulton’s condition factor (K)), at stocking (S, May 9th 2019) and harvest (June 24th 2019) for each treatment (C, P and M). 2. Overall fish performances measured in group (batch weight, mean weight). 3. Daily quantities of feed delivered for each treatment.
DOI: 10.57745/fvw8sy
title: Xenorhabdus kozodoii FR74 epigenetic data

description: DNA methylation was determined using the ds_modification_motif_analysis protocol within SMRT Link 5.1.0 which uses an in silico kinetic reference and a Welch’s t-test based kinetic score detection of modified base positions with parameters set as follow: subread/polymerase read length &gt;= 500, polymerase read quality &gt;= 80 and modification QV &gt;= 30. A score of 30 for the “Modification QV” is the default threshold for calling a position as modified, and corresponds to a p-value of 0.001.
DOI: 10.57745/gcuycf
title: Targeted metabolomics data

description: The chemicals, standards and extraction protocol used as the same as given in Loupit et al. (2022) The analysis protocol was the same as described by Loupit et al. (2020) with some modifications and a different column (Agilent ZORBAX RRHD SB-C18 (2.1 mm x 100 mm, 1.8 μm)). Loupit G, Prigent S, Franc C, De Revel G, Richard T, Cookson SJ, Fonayet JV. 2020. Polyphenol Profiles of Just Pruned Grapevine Canes from Wild Vitis Accessions and Vitis vinifera Cultivars. Journal of Agricultural and Food Chemistry 68, 13397-13407. Loupit G, Prigent S, Prodhomme D, Spilmont AS, Hilbert G, Franc C, de Revel G, Ollat N, Valls Fonayet J, Cookson SJ. 2022. Identifying early metabolite markers of successful graft union formation in grapevine Horticultural Research 9, uhab070.
DOI: 10.57745/gpyx7i
title: Dataset for studying the stability of various odorants in canisters and Nalophan® bags

description: This data set describes the quantitative stability of a certain number of chemical products, in a vapor state, in different gas containers: Nalophan bags (PET bags) and canisters. Odorants were vaporized in canisters under a vacuum. The concentrations of each compound were determined using gas chromatography coupled with a flame ionization detector. The evolution of the recovery rates was traced over 96 hours. The stability of the odorants was also examined in Nalophan bags similar to the study done in canisters. However, instead of vaporizing the compounds directly in the bags, a specific volume of the already vaporized compound was taken from the respective canister and then introduced and diluted in a bag. The evolution of the recovery rates in the bags was traced over 4 hours. The results are diagrams representing the evolution of the recovery rate over time for each compound.
DOI: 10.57745/gykf3f
title: Replication Data for : Species richness enhances the stability of arthropod biomass by decreasing their temporal turnover in agricultural landscapes

description: Data on carabids, farming practices and landscape context from 3 areas in France (close to Rennes, Dijon and Toulouse). Samplings were performed during the 2014-2019 period.
DOI: 10.57745/eibep8
title: Bioinformatics scripts

description: Bioinformatics scripts used for the EpiRADseq analyses
DOI: 10.57745/eyprsu
title: Supplemental data for 'Allele mining of eukaryotic translation initiation factor genes in Prunus species for the identification of new sources of resistance to sharka'

description: Background: Members of the eukaryotic translation initiation complex are co-opted in viral infection, leading to susceptibility in many crop species, including stone fruit trees (Prunus spp). Therefore, modification of one of those eukaryotic translation initiation factors or changes in their gene expression may result in resistance. Objective: We searched the crop and wild Prunus germplasm from the Armeniaca and Amygdalus taxonomic sections for variants in the eIF4E and eIFiso4E genes, to identify alleles potentially linked to resistance to the Plum Pox Virus (PPV). Methodology/Results: Over one thousand stone fruit accessions (1,397) were screened for variation in eIF4E and eIFiso4E transcript sequences which are in single copy within the diploid Prunus genome. We identified new alleles for both genes that are not evident in haplotypes associated with PPV susceptible individuals. Overall, analyses showed that eIFiso4E is genetically more constrained since it displayed less polymorphism than eIF4E. We also demonstrated more variation at both loci in the related wild species than in crop species. As the eIFiso4E translation initiation factor was identified as indispensable for PPV infection in Prunus species, a selection of ten different eIFiso4E haplotypes along 13 individuals were tested by infection with PPV and eight of them displayed a range of reduced susceptibility to resistance, indicating new potential sources of resistance to sharka.
DOI: 10.57745/f0xzp8
title: Dataset for publication: Autophagy modulation in primary culture of porcine satellite cells

description: Molecular data and Western blot images for autophagy investigation in pig satellite cells during myogenic differentiation