cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57755/5j6c-j530
title: Chromatographic and bioactivity data for sea buckthorn microspheres: Carotenoids, tocopherols and tocotrienols (LC-PDA/FL), ORAC, and antidiabetic enzyme inhibition assays

description: <p>This dataset contains raw data for microsphere and control extracts supporting carotenoid, tocopherol and tocotrienol profiling and bioactivity assessment. The package includes: (i) UPLC-FL chromatographic peak tables for tocopherols and tocotrienols; (ii) LC-PDA-QTOF-ESI(&#43;)-MS chromatographic data for carotenoids; (iii) spectrophotometric bioactivities comprising ORAC and endpoint enzyme inhibition for α-amylase and α-glucosidase; and (iv) statistical outputs with the corresponding input matrix.</p>
DOI: 10.6084/m9.figshare.30195745
title: Unique role of TCs in promoting invasions

description: Climate change induced extreme weathers and invasive species are major threats to global biodiversity and social economy, yet the unique role of extreme weathers in facilitating biological invasions remains uncertain. we found that the richness and relative abundance of nonnative freshwater animals, especially fishes, were greater at TC-frequent sites than at TC-free sites after accounting for effects of water body landscapes, native biodiversity, and anthropogenic factors such as aquaculture and religious release of nonnative animals. Our findings highlight the importance of developing proactive strategies against the combined impacts of extreme weathers and biological invasions under sustained global change.
DOI: 10.6084/m9.figshare.30195745.v1
title: Unique role of TCs in promoting invasions

description: Climate change induced extreme weathers and invasive species are major threats to global biodiversity and social economy, yet the unique role of extreme weathers in facilitating biological invasions remains uncertain. we found that the richness and relative abundance of nonnative freshwater animals, especially fishes, were greater at TC-frequent sites than at TC-free sites after accounting for effects of water body landscapes, native biodiversity, and anthropogenic factors such as aquaculture and religious release of nonnative animals. Our findings highlight the importance of developing proactive strategies against the combined impacts of extreme weathers and biological invasions under sustained global change.
DOI: 10.13127/sd/nn2d4jczt4
title: Campi Flegrei seismic records between January 2022 and March 2025

description: Data-set of waveforms recorded by several the Campi Flegrei seismic stations (V0105, V0102, CRUS, CROS, CMDP, CFB1, CFB3, CREM, CSOC, CLAC, CGAU)  during the earthquakes identified by Artificia Incelligenge trained as described in the article Tan et al. (submitted to Science). Each waveform is cut 5 s before the origin time and ends 55 s after.
DOI: 10.5281/zenodo.17182226
title: Research data for: "SiC-TGAP: A machine learning interatomic potential for radiation damage simulations in 3C-SiC"

description: Attahced are the training dataset and potential files for the publication "SiC-TGAP: A machine learning interatomic potential for radiation damage simulations in 3C-SiC".

The description of the uploaded files is as follows:





dataset-SiC-TGAP.xyz: The reference training dataset, in which the atomic structures are stored in the "extxyz" format. Each structure is tagged with the total energy, atomic force components, and virial stresses, calculated with the VASP code using the PBE functional. Each structure is labeled with the "config_type" keyword, which defines the category to which the structure belongs. An additional "sub_config" keyword provides more information about the structure. The dataset contains 3000 atomic structures and 258543 atomic environments.




SiC-TGAP_LAMMPS: The potential files for LAMMPS.




SiC-TGAP_TurboGAP: The potential files and additional required files to use the potential in the TurboGAP code. To use the potential with TurboGAP, the associated files should be stored in (and called from) the "gap_files" directory.



The unique identifier of the potential is: "GAP_2025_5_5_180_5_9_6_648".
DOI: 10.5281/zenodo.17182227
title: Research data for: "SiC-TGAP: A machine learning interatomic potential for radiation damage simulations in 3C-SiC"

description: Attahced are the training dataset and potential files for the publication "SiC-TGAP: A machine learning interatomic potential for radiation damage simulations in 3C-SiC".

The description of the uploaded files is as follows:





dataset-SiC-TGAP.xyz: The reference training dataset, in which the atomic structures are stored in the "extxyz" format. Each structure is tagged with the total energy, atomic force components, and virial stresses, calculated with the VASP code using the PBE functional. Each structure is labeled with the "config_type" keyword, which defines the category to which the structure belongs. An additional "sub_config" keyword provides more information about the structure. The dataset contains 3000 atomic structures and 258543 atomic environments.




SiC-TGAP_LAMMPS: The potential files for LAMMPS.




SiC-TGAP_TurboGAP: The potential files and additional required files to use the potential in the TurboGAP code. To use the potential with TurboGAP, the associated files should be stored in (and called from) the "gap_files" directory.



The unique identifier of the potential is: "GAP_2025_5_5_180_5_9_6_648".
DOI: 10.15468/dl.ddg2sr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is India",
 "DatasetKey is Documentation of various Moth species during National Moth Week 2022 across Kolkata, West Bengal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphrageidus similis",
 "Year 1978-2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011103-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/4345b34c-e924-4314-848a-b62b2f195457
title: Data and code underlying the MSc thesis: Dynamic Diameter Dialysis Needle

description: This dataset includes the data and code for data analysis regarding the operating force-, insertion force-, and tissue damage analysis of a novel dialysis needle. Added to this, data and code for the operating movement user test is in included. The dataset also contains all SOLIDWORKS models used for prototyping, experiments and the final design.
DOI: 10.5281/zenodo.15119622
title: Supplementary Files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen"

description: Supplementary files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen" by Baril, Puccetti, and Croll, 2025. 

 

Abstract:

Transposable elements (TEs) shape host-pathogen interactions and contribute to antimicrobial resistance, but how adaptive TEs arise in populations and how historical contingencies affect TE dynamics remains unclear. Fungal crop pathogens provide unique frameworks to address such questions due to spatially explicit sampling and well-characterized niches. We characterise TE evolutionary dynamics in 1,953 publicly available genomes across the global distribution range of the major wheat pathogen Zymoseptoria tritici. We characterise genomic diversity, benchmark methods to infer TE insertion polymorphism, and assess TEs as a source of adaptive variation. Across ~3.2 million annotated TE loci, we find substantial variation in TE content within and across populations. TE activity surged during the pathogen's expansion from the Middle East, with distinct activity profiles in derived populations. TE-mediated adaptation emerged from waves of TE mobilization, with the highest TE activity observed over as little as 25 years. 45 TE loci within 1kb of 49 host genes show local adaptation signatures, likely related to adaptation to antifungals and the plant host environment. This work highlights the power of vast genomic datasets to unravel intraspecies TE invasion histories and pinpoint factors driving recent adaptation and argues for deep population-level TE surveys to uncover molecular drivers of adaptive evolution.

README contains description of files contained in this repository. All supplementary materials related to this manuscript are supplied in this repository.
DOI: 10.5281/zenodo.17189961
title: Supplementary Files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen"

description: Supplementary files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen" by Baril, Puccetti, and Croll, 2025. 

 

Abstract:

Transposable elements (TEs) shape host-pathogen interactions and contribute to antimicrobial resistance, but how adaptive TEs arise in populations and how historical contingencies affect TE dynamics remains unclear. Fungal crop pathogens provide unique frameworks to address such questions due to spatially explicit sampling and well-characterized niches. We characterise TE evolutionary dynamics in 1,953 publicly available genomes across the global distribution range of the major wheat pathogen Zymoseptoria tritici. We characterise genomic diversity, benchmark methods to infer TE insertion polymorphism, and assess TEs as a source of adaptive variation. Across ~3.2 million annotated TE loci, we find substantial variation in TE content within and across populations. TE activity surged during the pathogen's expansion from the Middle East, with distinct activity profiles in derived populations. TE-mediated adaptation emerged from waves of TE mobilization, with the highest TE activity observed over as little as 25 years. 45 TE loci within 1kb of 49 host genes show local adaptation signatures, likely related to adaptation to antifungals and the plant host environment. This work highlights the power of vast genomic datasets to unravel intraspecies TE invasion histories and pinpoint factors driving recent adaptation and argues for deep population-level TE surveys to uncover molecular drivers of adaptive evolution.

README contains description of files contained in this repository. All supplementary materials related to this manuscript are supplied in this repository.
DOI: 10.4121/4345b34c-e924-4314-848a-b62b2f195457.v1
title: Data and code underlying the MSc thesis: Dynamic Diameter Dialysis Needle

description: This dataset includes the data and code for data analysis regarding the operating force-, insertion force-, and tissue damage analysis of a novel dialysis needle. Added to this, data and code for the operating movement user test is in included. The dataset also contains all SOLIDWORKS models used for prototyping, experiments and the final design.
DOI: 10.5281/zenodo.17189991
title: Temperature and Humidity Profiles in Beijing, China: MWR 1D-var Retrieval Results

description: The file OE_MWR.nc represents the temperature and humidity profiles during 202007-202207, derived from microwave radiometer brightness temperatures using the 1-D var method.

The file OE_MWR_02m.nc presents the temperature and humidity profile results, obtained by integrating surface temperature and humidity observations (TQ02) into ground-based microwave radiometer retrievals using a one-dimensional variational framework.

The file OE_MWR_30m.nc presents the temperature and humidity profile results, obtained by integrating tower-based temperature and humidity observations at 30 m (TQ30) into ground-based microwave radiometer retrievals using a one-dimensional variational framework.
DOI: 10.15468/dl.wgzexw
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.39706030276592 18.152374872229334,-92.28133853736911 18.152374872229334,-92.28133853736911 19.268096637626147,-93.39706030276592 19.268096637626147,-93.39706030276592 18.152374872229334))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Archosargus probatocephalus"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011106-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94qcja
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.01257345134908 18.147169539657405,-91.73746286232415 18.147169539657405,-91.73746286232415 19.42228012868234,-93.01257345134908 19.42228012868234,-93.01257345134908 18.147169539657405))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anchoa hepsetus"
 ]
}

 The dataset includes 23 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011104-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2f8r9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipistrellus maderensis",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "Country is Spain",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 },
 "DistanceFromCentroidInMeters is greater than or equal to 1000",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015",
 "Month is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011107-250920141307145/datasets/export for details.
DOI: 10.15468/dl.73tdac
title: Occurrence Download

description: A dataset containing 18469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-84.81484 19.11264,-73.84412 19.11264,-73.84412 23.75829,-84.81484 23.75829,-84.81484 19.11264))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Porites astreoides, Montastraea cavernosa, Siderastrea siderea, Siderastrea radians, Agaricia agaricites, Stephanocoenia intersepta, Manicina areolata, Colpophyllia natans, Pseudodiploria strigosa, Diploria labyrinthiformis, Meandrina meandrites, Eusmilia fastigiata, Dichocoenia stokesii, Porites porites, Porites furcata, Orbicella annularis, Orbicella faveolata, Orbicella franksi, Pseudodiploria clivosa, Isophyllia sinuosa, Isophyllia rigida, Mycetophyllia aliciae, Mycetophyllia ferox, Mycetophyllia lamarckiana, Scolymia cubensis, Scolymia lacera, Agaricia tenuifolia, Agaricia lamarcki, Agaricia humilis, Porites divaricata, Madracis auretenra, Madracis decactis, Porites colonensis, Acropora palmata, Acropora cervicornis, Dendrogyra cylindrus, Meandrina jacksoni, Solenastrea bournoni, Solenastrea hyades, Favia fragum, Agaricia grahamae, Helioseris cucullata, Madracis carmabi, Porites branneri, Oculina diffusa)"
 ]
}

 The dataset includes 18469 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011108-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp2s3e
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Agave stricta)"
 ]
}

 The dataset includes 84 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011109-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggmgj9
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-96.8725664966922 17.5949445089375,-94.5043854009414 17.5949445089375,-94.5043854009414 19.963125604688297,-96.8725664966922 19.963125604688297,-96.8725664966922 17.5949445089375))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Astroscopus y-graecum"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011110-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17190001
title: Data and code of article "34° N shift and inland extension: The trend of tropical cyclones landfall and influence regions in China in recent 75 years"
DOI: 10.5281/zenodo.17190000
title: Data and code of article "34° N shift and inland extension: The trend of tropical cyclones landfall and influence regions in China in recent 75 years"
DOI: 10.15468/dl.y4xxx6
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Avena sativa"
 ]
}

 The dataset includes 860 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011111-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvt9yy
title: Occurrence Download

description: A dataset containing 4815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Exocoetidae",
 "Year 2005-2025"
 ]
}

 The dataset includes 4815 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011113-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4fre3
title: Occurrence Download

description: A dataset containing 4537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bougainvillea glabra"
 ]
}

 The dataset includes 4537 records from 403 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011079-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/sinhk1
title: GENITEC - Solutions Naturelles sans Structures Rigides (guide technique)

description: Ce guide technique, fruit d’une collaboration entre l’INRAE et l’OFB, présente des solutions fondées sur la nature pour la stabilisation et la restauration des berges, en excluant les structures rigides au profit de la seule végétation. Il détaille les principales techniques de génie végétal, leurs conditions d’application, les prescriptions techniques ainsi que les modalités concrètes de mise en œuvre sur le terrain.
DOI: 10.15468/dl.sd4ezb
title: Occurrence Download

description: A dataset containing 4537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bougainvillea glabra"
 ]
}

 The dataset includes 4537 records from 398 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011081-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26bf2p
title: Occurrence Download

description: A dataset containing 38963662 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Mexico"
 ]
}

 The dataset includes 38963662 records from 4010 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011031-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqvkk7
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinodaphne mushaensis (Hayata) Hayata"
 ]
}

 The dataset includes 450 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015662-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v0ptnc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leopardus geoffroyi (d'Orbigny & Gervais, 1844)",
 "Country is Brazil"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008580-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9ekkv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ilex nubicola C.Y.Wu ex Y.R.Li"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029420-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwtveg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pristimantis ornatus (Lehr, Lundberg, Aguilar & von May, 2006)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041421-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk3wig
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus trojana Webb"
 ]
}

 The dataset includes 171 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008580-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c92wdt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.03707 35.50644,-6.08592 35.54515,-6.38096 36.82232,-8.42456 36.87911,-10.02864 36.46133,-9.03707 35.50644))",
 "OccurrenceStatus is Present",
 "TaxonKey is Sardina pilchardus (Walbaum, 1792)"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029491-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su7jys
title: Occurrence Download

description: A dataset containing 1855908 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sturnella magna (Linnaeus, 1758)"
 ]
}

 The dataset includes 1855908 records from 317 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041448-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.