cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.924793.v2
title: dsIDR

description: dsIDR legal notes
DOI: 10.6084/m9.figshare.924690
title: Arabuko-Sokoke forest ecological data: Sokoke Pipit abundance, vegetation survey results, floor litter measures and elephant damage in three forest blocks

description: Sokoke Pipit.<br>Data showing sightings for Sokoke Pipits Anthus sokokensis encountered across the transects surveyed. Shows the data on the number of Sokoke Pipit detected in the transects of the study area including specification of the forest block where the transect occurs, the survey number, abundance of Sokoke pipit individuals or clusters detected, and the perpendicular sighting distance (in metres) from the transect centre. Vegetation assessment<br>Data on vegetation survey and assessment in all transects surveyed. Contains data on the transects along which the vegetation was surveyed, including the forest block name, transect number, quadrat number within transect, breast-height size classes of live and cut tree stems that were counted (0 to 30 cm, 31 to 60 cm and over 60 cm), percent forest canopy cover score and tree canopy height, representing height of tallest trees. Canopy cover scores were translated into 0-33 % (open); 34-66 % (moderate) and &gt;66 % (closed). Forest floor litter assessment<br>Data on forest floor assessment across the transects in all forest blocks surveyed. Contains data on floor assessment in each transect surveyed including names of forest blocks, transect and quadrat numbers in the blocks, litter cover scores in three categories (little or no cover; moderately covered and fully covered); and litter depth measurements in three different points in the quadrats. Forest floor litter cover scores were translated into 0-33 % (open/bare ground); 34-66 % (moderate) and &gt;66 % (covered). Elephant damage assessment<br>Data on extent of damage by elephants. Contains data on evaluation of degree of damage of habitat by elephants, roughly assessed by the number of trees felled or bent and observation of ground-digging by elephants. This data is available for Kararacha and Narasha blocks only and thus incomplete for overall analysis.
DOI: 10.6084/m9.figshare.924689
title: Data Set 1

description: Weather station data
DOI: 10.6084/m9.figshare.924690.v1
title: Arabuko-Sokoke forest ecological data: Sokoke Pipit abundance, vegetation survey results, floor litter measures and elephant damage in three forest blocks

description: Sokoke Pipit.<br>Data showing sightings for Sokoke Pipits Anthus sokokensis encountered across the transects surveyed. Shows the data on the number of Sokoke Pipit detected in the transects of the study area including specification of the forest block where the transect occurs, the survey number, abundance of Sokoke pipit individuals or clusters detected, and the perpendicular sighting distance (in metres) from the transect centre. Vegetation assessment<br>Data on vegetation survey and assessment in all transects surveyed. Contains data on the transects along which the vegetation was surveyed, including the forest block name, transect number, quadrat number within transect, breast-height size classes of live and cut tree stems that were counted (0 to 30 cm, 31 to 60 cm and over 60 cm), percent forest canopy cover score and tree canopy height, representing height of tallest trees. Canopy cover scores were translated into 0-33 % (open); 34-66 % (moderate) and &gt;66 % (closed). Forest floor litter assessment<br>Data on forest floor assessment across the transects in all forest blocks surveyed. Contains data on floor assessment in each transect surveyed including names of forest blocks, transect and quadrat numbers in the blocks, litter cover scores in three categories (little or no cover; moderately covered and fully covered); and litter depth measurements in three different points in the quadrats. Forest floor litter cover scores were translated into 0-33 % (open/bare ground); 34-66 % (moderate) and &gt;66 % (covered). Elephant damage assessment<br>Data on extent of damage by elephants. Contains data on evaluation of degree of damage of habitat by elephants, roughly assessed by the number of trees felled or bent and observation of ground-digging by elephants. This data is available for Kararacha and Narasha blocks only and thus incomplete for overall analysis.
DOI: 10.6084/m9.figshare.924740.v2
title: A new compendium of soil respiration data for Africa

description: This dataset is the first most comprehensive dataset on soil respiration in Africa. It present raw data on 52 observations obtained through meta analysis from over 28 different publications. Prior to this dataset, the only other dataset that existed had just 4 observations of soil respiration for the entire African continent.
DOI: 10.6084/m9.figshare.924689.v1
title: Data Set 1

description: Weather station data
DOI: 10.6084/m9.figshare.924740.v3
title: A new compendium of soil respiration data for Africa

description: This dataset is the first most comprehensive dataset on soil respiration in Africa. It present raw data on 52 observations obtained through meta analysis from over 28 different publications. Prior to this dataset, the only other dataset that existed had just 4 observations of soil respiration for the entire African continent.
DOI: 10.6084/m9.figshare.924740.v4
title: hematology

description: This dataset is the first most comprehensive dataset on soil respiration in Africa. It present raw data on 52 observations obtained through meta analysis from over 28 different publications. Prior to this dataset, the only other dataset that existed had just 4 observations of soil respiration for the entire African continent.
DOI: 10.6084/m9.figshare.923561
title: Data from "Physiological plasticity to water flow habitat in the damselfish, Acanthochromis polyacanthus: linking phenotype to performance"

description: Data from Binning et al. In revision. <br>This study tested whether aspects of swimming physiology and fin shape show plastic responses to unsteady, wave-driven water flow in a laboratory experiment using split-broods of a widespread damselfish (<em>Acanthochromis polyacanthus</em>) reared under different flow regimes. We collected fish from 16 broods at Lizard Island, northern Great Barrier Reef, Australia. Eight broods were on the predominantly windward (wave exposed) and eight on the leeward (sheltered) side of the island. We injected individuals from each brood with Visible Implant Elastomer tags to uniquely colour-code siblings.Three individuals from each brood were randomly assigned to a training tank (wave treatment or calm treatment). We measured fin shape (aspect ratio) after 4 and 8 months in the rearing treatment. After 7-8 months, we also measured critical swimming speed (Ucrit), and oxygen consumption rates (ṀO2: mg O2kg-1h-1) in a swimming respirometer. We also took blood samples, and measured blood cortisol (ng/ml) and haematocrit (proportion red blood cells to total blood volume). We compared these results with those found in wild-caught adult individuals of the same species published in another study (Binning et al. 2014 Oecologia: doi:10.1007/s00442-013-2794-5). Please see Binning et al. for more detailed description of the methods.
DOI: 10.6084/m9.figshare.923555
title: The Pediatric Template of Brain Perfusion (PTBP)

description: Magnetic resonance imaging (MRI) captures the dynamics of brain development with high spatial resolu- tion and with complementary modalities that quantify both brain structure and function. These measurements may yield valuable insights into the neural patterns that mark healthy maturation or that identify early risk for psychiatric disorder later in life. The Pediatric Template of Brain Perfusion (PTBP) is a free and public neuroimaging resource that will help accelerate the understanding of childhood brain development as seen through the lens of multiple modality neuroimaging and in relation to cognitive and environmental factors. The PTBP uses MRI to quantify cortex (T1), white matter (DTI), resting state functional connectivity (BOLD) and brain perfusion, as measured by Arterial Spin Labeling (ASL), in &gt;100 children 7—17 years of age. The PTBP captures, within normally developing children and across several modalities, the trajectories that demarcate critical turning points in brain maturation. This novel resource allows a more detailed understanding of the structural and functional landmarks that are obtained during normal adolescent brain development. The full raw nifti dataset is available at the link below. The file jjperf.Rnw is the original knitr version of the article - no guarantee to compile "out of the box" nor to be consistent with the official final version of the manuscript which underwent revision outside of the knitr world. There are also several typos in this version. The PTBP was supported by Danny JJ Wang's R01MH080892 funded by NIMH. The article is in press.
DOI: 10.6084/m9.figshare.923552
title: Growth parameters of Sula leucogaster etesiaca chicks from Gorgona Island, eastern tropical Pacific Ocean.

description: Growth parameters of <em>Sula leucogaster</em> etesiaca chicks. Weight increments (g) for 4 chicks from Juanchincho II colony, Gorgona NNP, Colombia in the reproductive season March–July 2003. More info and analysis: Ospina-Álvarez, A. (2104) Breeding ecology of brown booby (Sula leucogaster) in Gorgona Island, eastern tropical Pacific Ocean. Notornis 61(1):10-18.
DOI: 10.6084/m9.figshare.924740.v5
title: A new compendium of soil respiration data for Africa

description: This dataset is the first most comprehensive dataset on soil respiration in Africa. It presents raw data on 62 observations obtained through meta analysis from over 35 different publications. Prior to this dataset, the only other dataset that existed had just 4 observations of soil respiration for the entire African continent.
DOI: 10.6084/m9.figshare.924740.v7
title: A new compendium of soil respiration data for Africa

description: Soil Respiration, Database, Africa
DOI: 10.6084/m9.figshare.923552.v1
title: Growth parameters of Sula leucogaster etesiaca chicks from Gorgona Island, eastern tropical Pacific Ocean.

description: Growth parameters of <em>Sula leucogaster</em> etesiaca chicks. Weight increments (g) for 4 chicks from Juanchincho II colony, Gorgona NNP, Colombia in the reproductive season March–July 2003. More info and analysis: Ospina-Álvarez, A. (2104) Breeding ecology of brown booby (Sula leucogaster) in Gorgona Island, eastern tropical Pacific Ocean. Notornis 61(1):10-18.
DOI: 10.6084/m9.figshare.923550
title: Alves Bed Jaw

description: This is part of the publication "A large, anatomically primitive tristichopterid (Sarcopterygii: Tetrapodomorpha) from the Late Devonian (Frasnian) Alves Beds, Upper Old Red Sandstone, Moray, Scotland" A .ply file of a nearly complete mandible of a large tetrapodomorph sarcopterygian from the Frasnian Alves Beds.
DOI: 10.6084/m9.figshare.923555.v1
title: The Pediatric Template of Brain Perfusion (PTBP)

description: Magnetic resonance imaging (MRI) captures the dynamics of brain development with high spatial resolu- tion and with complementary modalities that quantify both brain structure and function. These measurements may yield valuable insights into the neural patterns that mark healthy maturation or that identify early risk for psychiatric disorder later in life. The Pediatric Template of Brain Perfusion (PTBP) is a free and public neuroimaging resource that will help accelerate the understanding of childhood brain development as seen through the lens of multiple modality neuroimaging and in relation to cognitive and environmental factors. The PTBP uses MRI to quantify cortex (T1), white matter (DTI), resting state functional connectivity (BOLD) and brain perfusion, as measured by Arterial Spin Labeling (ASL), in &gt;100 children 7—17 years of age. The PTBP captures, within normally developing children and across several modalities, the trajectories that demarcate critical turning points in brain maturation. This novel resource allows a more detailed understanding of the structural and functional landmarks that are obtained during normal adolescent brain development. This is currently a pre-publication example of a single subject. More data will be added in the future. The PTBP was supported by Danny JJ Wang's R01MH080892
DOI: 10.6084/m9.figshare.924740.v6
title: A new compendium of soil respiration data for Africa

description: This dataset is the first most comprehensive dataset on soil respiration in Africa. It presents raw data on 62 observations obtained through meta analysis from over 35 different publications. Prior to this dataset, the only other dataset that existed had just 4 observations of soil respiration for the entire African continent.
DOI: 10.6084/m9.figshare.923546
title: Stenomutilla chinensis Zavattari, 1922

description: <em><strong>Stenomutilla chinensis</strong></em> Zavattari, 1922, syntypes ♂♂ "Süd China, Pingshiang, leg. Kreyenberg". Original description: Entomologische Mitteilungen, Berlin-Dahlem <strong>11</strong>: 192. Complete views, details, and labels of these specimens. Photos were taken at the SDEI with a Leica DFC 495 digital camera and M205 C microscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3.
DOI: 10.6084/m9.figshare.923561.v1
title: Data from Binning et al. In review

description: Data from Binning et al. In review. <br>This study tested whether aspects of swimming physiology and fin shape show plastic responses to unsteady, wave-driven water flow in a laboratory experiment using split-broods of a widespread damselfish (<em>Acanthochromis polyacanthus</em>) reared under different flow regimes. We collected fish from 16 broods at Lizard Island, northern Great Barrier Reef, Australia. Eight broods were on the predominantly windward (wave exposed) and eight on the leeward (sheltered) side of the island. We injected individuals from each brood with Visible Implant Elastomer tags to uniquely colour-code siblings.Three individuals from each brood were randomly assigned to a training tank (wave treatment or calm treatment). We measured fin shape (aspect ratio) after 4 and 8 months in the rearing treatment. After 7-8 months, we also measured gait transition speed (Up-c), critical swimming speed (Ucrit), and oxygen consumption rates (ṀO2: mg O2kg-1h-1) in a swimming respirometer. We also took blood samples, and measured blood cortisol (ng/ml) and haematocrit (proportion red blood cells to total blood volume). Please see Binning et al. for more detailed description of the methods.
DOI: 10.6084/m9.figshare.923538
title: Supplementary Figure 1. Illustration of the metagenome binning signal provided by Hi-C.

description: Two bacterial cells are illustrated, each containing a single circular chromosome. For one genomic region in each of the two species, examples of associations that are likely (green; red is “not likely”) to be derived from Hi-C are illustrated.
DOI: 10.6084/m9.figshare.923546.v1
title: Stenomutilla chinensis Zavattari, 1922

description: <em><strong>Stenomutilla chinensis</strong></em> Zavattari, 1922, syntypes ♂♂ "Süd China, Pingshiang, leg. Kreyenberg". Original description: Entomologische Mitteilungen, Berlin-Dahlem <strong>11</strong>: 192. Complete views, details, and labels of these specimens. Photos were taken at the SDEI with a Leica DFC 495 digital camera and M205 C microscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3.
DOI: 10.6084/m9.figshare.923550.v1
title: Alves Bed Jaw

description: This is part of the publication "A large, anatomically primitive tristichopterid (Sarcopterygii: Tetrapodomorpha) from the Late Devonian (Frasnian) Alves Beds, Upper Old Red Sandstone, Moray, Scotland" A .ply file of a nearly complete mandible of a large tetrapodomorph sarcopterygian from the Frasnian Alves Beds.
DOI: 10.6084/m9.figshare.923555.v2
title: The Pediatric Template of Brain Perfusion (PTBP)

description: Magnetic resonance imaging (MRI) captures the dynamics of brain development with high spatial resolu- tion and with complementary modalities that quantify both brain structure and function. These measurements may yield valuable insights into the neural patterns that mark healthy maturation or that identify early risk for psychiatric disorder later in life. The Pediatric Template of Brain Perfusion (PTBP) is a free and public neuroimaging resource that will help accelerate the understanding of childhood brain development as seen through the lens of multiple modality neuroimaging and in relation to cognitive and environmental factors. The PTBP uses MRI to quantify cortex (T1), white matter (DTI), resting state functional connectivity (BOLD) and brain perfusion, as measured by Arterial Spin Labeling (ASL), in &gt;100 children 7—17 years of age. The PTBP captures, within normally developing children and across several modalities, the trajectories that demarcate critical turning points in brain maturation. This novel resource allows a more detailed understanding of the structural and functional landmarks that are obtained during normal adolescent brain development. This is currently a pre-publication example of a single subject. More data will be added in the future. The PTBP was supported by Danny JJ Wang's R01MH080892
DOI: 10.6084/m9.figshare.923538.v1
title: Supplementary Figure 1. Illustration of the metagenome binning signal provided by Hi-C.

description: Two bacterial cells are illustrated, each containing a single circular chromosome. For one genomic region in each of the two species, examples of associations that are likely (green; red is “not likely”) to be derived from Hi-C are illustrated.
DOI: 10.6084/m9.figshare.923561.v2
title: Data from Physiological plasticity to water flow habitat in the damselfish, Acanthochromis polyacanthus: linking phenotype to performance

description: Data from Binning et al. In review. <br>This study tested whether aspects of swimming physiology and fin shape show plastic responses to unsteady, wave-driven water flow in a laboratory experiment using split-broods of a widespread damselfish (<em>Acanthochromis polyacanthus</em>) reared under different flow regimes. We collected fish from 16 broods at Lizard Island, northern Great Barrier Reef, Australia. Eight broods were on the predominantly windward (wave exposed) and eight on the leeward (sheltered) side of the island. We injected individuals from each brood with Visible Implant Elastomer tags to uniquely colour-code siblings.Three individuals from each brood were randomly assigned to a training tank (wave treatment or calm treatment). We measured fin shape (aspect ratio) after 4 and 8 months in the rearing treatment. After 7-8 months, we also measured gait transition speed (Up-c), critical swimming speed (Ucrit), and oxygen consumption rates (ṀO2: mg O2kg-1h-1) in a swimming respirometer. We also took blood samples, and measured blood cortisol (ng/ml) and haematocrit (proportion red blood cells to total blood volume). Please see Binning et al. for more detailed description of the methods.
DOI: 10.6084/m9.figshare.923523
title: Location of data citations in traditional scholarly publications

description: This dataset contains the location of 40 citations to figshare content in traditional scholarly articles. This is not meant to be a comprehensive dataset, just a small testing sample to identify whether academic researchers are citing non traditional outputs in a standardised manner. eg. http://www.force11.org/datacitation As can be seen, only 10 out of the 40 are cited in the reference list, as is the recommendation. The fact that bibliometric companies that are involved in citation counting only look at reference lists suggests this approach may be problematic as academics change their thinking towards non-pdf based research outputs. The citations were taken from a random selection of google scholar notification emails. All articles in the dataset have the citation in front of the paywall.
DOI: 10.6084/m9.figshare.923534
title: Figure 2. Metagenomic Hi-C associations.

description: The log-scaled, normalized number of Hi-C read pairs associating each genomic replicon in the synthetic community is shown as a heat map (see color scale, blue to yellow: low to high normalized, log scaled association rates). Bur1: B. thailandensis chromosome 1. Bur2: B. thailandensis chromosome 2. Lac0: L. brevis chromosome, Lac1: L. brevis plasmid 1, Lac2: L. brevis plasmid 2, Ped: P. pentosaceus, K12: E. coli K12 DH10B, BL21: E. coli BL21.
DOI: 10.6084/m9.figshare.923534.v1
title: Figure 2. Metagenomic Hi-C associations.

description: The log-scaled, normalized number of Hi-C read pairs associating each genomic replicon in the synthetic community is shown as a heat map (see color scale, blue to yellow: low to high normalized, log scaled association rates). Bur1: B. thailandensis chromosome 1. Bur2: B. thailandensis chromosome 2. Lac0: L. brevis chromosome, Lac1: L. brevis plasmid 1, Lac2: L. brevis plasmid 2, Ped: P. pentosaceus, K12: E. coli K12 DH10B, BL21: E. coli BL21.
DOI: 10.6084/m9.figshare.923561.v3
title: Data from "Physiological plasticity to water flow habitat in the damselfish, Acanthochromis polyacanthus: linking phenotype to performance"

description: Data from Binning et al. In review. <br>This study tested whether aspects of swimming physiology and fin shape show plastic responses to unsteady, wave-driven water flow in a laboratory experiment using split-broods of a widespread damselfish (<em>Acanthochromis polyacanthus</em>) reared under different flow regimes. We collected fish from 16 broods at Lizard Island, northern Great Barrier Reef, Australia. Eight broods were on the predominantly windward (wave exposed) and eight on the leeward (sheltered) side of the island. We injected individuals from each brood with Visible Implant Elastomer tags to uniquely colour-code siblings.Three individuals from each brood were randomly assigned to a training tank (wave treatment or calm treatment). We measured fin shape (aspect ratio) after 4 and 8 months in the rearing treatment. After 7-8 months, we also measured critical swimming speed (Ucrit), and oxygen consumption rates (ṀO2: mg O2kg-1h-1) in a swimming respirometer. We also took blood samples, and measured blood cortisol (ng/ml) and haematocrit (proportion red blood cells to total blood volume). We compared these results with those found in wild-caught adult individuals of the same species published in another study (Binning et al. 2014 Oecologia: doi:10.1007/s00442-013-2794-5). Please see Binning et al. for more detailed description of the methods.