cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7339803
title: Data and supplementary files for: Directing Min protein patterns with advective bulk flow

description: Simulation files as well as experiment data and analysis for the paper "Directing Min protein patterns with advective bulk flow".
DOI: 10.5281/zenodo.7351992
title: Topic model of cerme

description: Technical appendix for ESM paper. The list of topic distribution. The topic model visualization. The code that produced the model, for full transparency.
DOI: 10.5519/7qw9vju8
title: Eye‐body allometry across biphasic ontogeny in anuran amphibians

description: Animals with biphasic lifecycles often inhabit different visual environments across ontogeny. Many frogs and toads (Amphibia: Anura) have free-living aquatic larvae (tadpoles) that metamorphose into adults that inhabit a range of aquatic and terrestrial environments. Ecological differences influence eye size across species, however, these relationships have not yet been explored across life stages in an ontogenetic allometric context. We examined eye-body size scaling in a species with aquatic larvae and terrestrial adults, the common frog Rana temporaria, using a well-sampled developmental series. We found a shift in ontogenetic allometric trajectory near metamorphosis indicating prioritized growth in tadpole eyes. To explore the effects of different tadpole and adult ecologies on eye-body scaling, we expanded our taxonomic sampling to include developmental series of eleven additional anuran species. Intraspecific eye-body scaling was variable among species, with 8/12 species exhibiting a significant change in allometric slope between tadpoles and adults. Across species, slopes of tadpoles were found to be more variable than those of their adult counterparts. Traits categorizing both tadpole (tadpole microhabitat, tadpole eye position, tadpole mouth position) and adult (adult habitat, adult activity pattern) ecology across species had significant effects on allometric slopes among tadpoles, but only tadpole eye position had a significant effect among adults. Our study suggests that relative eye growth in the preliminary stages of biphasic anuran ontogenies is somewhat decoupled and may be shaped by both immediate ecological need (i.e. tadpole visual requirements) and what will be advantageous during later adult stages.
DOI: 10.6084/m9.figshare.19137146
title: Data associated with Sauve et al. Journal of Avian Biology

description: Data associated with Sauve et al. Ecological Monographs Submission<br><b>Four growth datasets are included</b>AlphaUnfedDat - Mass and age measurements for first-hatched black-legged kittiwake chicks<br>BetaUnfedDat - Mass and age measurements for second-hatched black-legged kittiwake chicksGullDat - Mass and age measurements for second-hatched glaucous-winged gull chicksMurreDat - Mass and age measurements for murre chicks<br><br><b>Six environmental datasets</b>SST100 - Average sea-surface temperature in 100km radius around Middleton Island for kittiwakes<br>MiddletonTemp - Air temperature from weather station on Middleton Island for kittiwakes and gulls<br>SST50 - Average sea-surface temperature in 50km radius around Middleton Island for gulls<br><br>SST60 - Average sea-surface temperature in 60km radius around Coats Island for murres<br>ICE60 - Average ice-cover in a 60km radius around Coats Island for murres<br>CoralHarbourTemp - Air temperature from weather station on CoralHarbour for murres<br><br><br><br><br>
DOI: 10.14278/rodare.2112
title: Data publication: Ab initio Computation of the Static Exchange--Correlation Kernel of Real Materials: From Ambient Conditions to Warm Dense Matter

description: This repository contains the DFT simulation results presented in the article "Ab Initio Static Exchange-Correlation Kernel across Jacob's Ladder without Functional Derivatives"
DOI: 10.17632/zdpz6m9gzf.1
title: Datasets for ichthyolith detection

description: The following three kinds of dataset are shared.

(1) 01_dataset_for_ai_ichthyolith
A zip file of training and validation dataset for ai_ichthyolith (Mask R-CNN).
A training folder includes 866 images and 1 annotation information in the format of VGG Image Annotator (https://www.robots.ox.ac.uk/~vgg/software/via/).
A validation folder include 92 images and 1 annotation information.

(2) 02_dataset_for_efficientNet-v2
A zip file for training and validation of classification model (efficientnet-v2).
A dataset include 17400 images of tooth, 15036 images of noise. 
These images were randomly split into training and validation dataset in the training code.
Although 36 images of denticle are included, they were not used for classification, because the number is too small.

(3) 03_dataset_for_practical_test
6 Zip files that include whole the observation regions of the slide.
A file include ~1000 images and annotation information in the format of labelImg (https://github.com/tzutalin/labelImg).

Sample codes are available at https://github.com/KazuhideMimura/ai_ichthyolith and https://github.com/KazuhideMimura/eNetV2_for_ai_ichthyolith
DOI: 10.5281/zenodo.6851220
title: Integration of an event-driven Timepix3 hybrid pixel detector into a cryo-EM workflow

description: <strong>Abstract</strong> The development of direct electron detectors has played a key role in low-dose electron microscopy imaging applications. Monolithic active-pixel sensor (MAPS) detectors are currently widely applied for cryogenic electron microscopy (cryo-EM); however, they have best performance at 300~kV, have relatively low read-out speed and only work in imaging mode. Hybrid pixel detectors (HPDs) can operate at any energy, have a higher DQE at lower voltage, have unprecedented high time resolution, and can operate in both imaging and diffraction modes. This could make them well-suited for novel low-dose life-science applications, such as cryo-ptychography, iDPC, and liquid cell imaging. Timepix3 is not frame-based, but truly event-based, and can record individual hits with 1.56~ns time resolution. Here, we present the integration of such a detector into a cryo-EM workflow and demonstrate that it can be used for automated data collection on biological specimens. The performance of the detector in terms of MTF and DQE has been investigated at 200~kV and we studied the effect of deterministic blur. We describe a single-particle analysis structure of \SI{3}{\angstrom} resolution and compare it with Falcon3 data collected under the same microscope. These studies could pave the way toward more efficient low-dose single-particle techniques. <strong>Data description</strong> Data has been split up in several different directories. In general: each directory contains individual READMEs <strong>Flat fields</strong> Collected on both TImepix3 and Falcon3 at 200 kV using a Tecnai Arctica microscope. These data have been used for calculating NPS, ToT correction and gain correction. <strong>Knife edge</strong> Collected on both TImepix3 and Falcon3 at 200 kV using a Tecnai Arctica microscope. These data have been used for calculating MTF. <strong>ToT correction calibration file</strong> This calibration file has been used to correct all raw Timepix3 data. Including micrographs deposited in EMPIAR. <strong>Gain correction</strong> Gain correction files calculated from flat field data for several different image formation methods of the Timepix3. The Python script for calculating the gain has been included. <strong>Software</strong> The software tpx3HitParser, tpx3EventViewer and the MTF-NPS-DQE scripts have listed as related identifiers to this entry.
DOI: 10.5281/zenodo.7276364
title: Interpersonal lending network

description: The dataset of this paper originated from quantitative surveys from May 2014 to June 2014. The data collection was embedded in a Participatory Action Research (PAR) which aim was to investigate the financial survival strategies of low-income households, in a Hungarian village in a disadvantaged region. The directed networks of lending and borrowing households is a unique dataset that empirically captures a hidden and informal finical activity between households. The network contains 158 households and 281 ties between them. A unique feature of the networks is that it indicates the social relations and the spatial distance between the households and also their financial situations. Therefore, the data describes not only the informal, interpersonal credit relations between the households but also the socioeconomic factors of the actors as well.
DOI: 10.6084/m9.figshare.18125381.v2
title: Genetic Distance Data set

description: Genetic distance modeling data sets for the Yazoo darter and goldstripe darter<br>
DOI: 10.1285/i22390359v40p45
title: A corpus-based approach to the analysis of the video abstract. A phase-based model

description: Academics constantly strive to gain greater visibility for their research, in particular through digital platforms that allow their research to be communicated to a wider public. Alongside old and well-established academic genres (e.g. the Research Article, the Abstract, and the Conference Presentation), new genres have emerged including the Blog, the TED Talk Lecture, and the Video Abstract. While the first two of these genres have received considerable attention in the discourse analysis community, research into the Video Abstract genre has only recently been undertaken despite the fact that scientific publishers (e.g. Taylor and Francis, Elsevier and SAGE) urge authors to present their articles in this way in order to enhance article visibility and improve the chances of an article being cited. The present study, grounded in ESP genre analysis and multimodal discourse analysis, investigates the strategies used in video abstracts by researchers to share their research using a small corpus of video abstracts taken from international journals of three different academic fields, namely Medicine, Biology, and Chemistry. In particular, the study attempts to understand the changes brought about by the shift from the written to the video channel of communication vis-à-vis the dissemination of research findings.
DOI: 10.48529/475c-n477
title: Enterprise Survey 2018
title: KEN_2018_ES_v01_M
DOI: 10.5281/zenodo.7404707
title: The role of mineral dust aerosol particles in aviation soot-cirrus interactions

description: The files contain the datasets shown in the publication "The role of mineral dust aerosol particles in aviation soot-cirrus interactions" to appear in J. Geophys. Res. Atmos. (revised manuscript submitted) The files are xmgrace plot files containing the research data (ASCII) shown in all figures that appear in the main text (4) and appendix (2).
DOI: 10.5281/zenodo.7471194
title: Atoll Island Change Datasets

description: Atoll island change datasets. Atoll Island Change Data.xlsx contains a global dataset of aggregated atoll island changes. Kandahalagalaa DSAS Results.xlsx contains the results of DSAS analysis of the island Kandahalagalaa in Huvadhoo atoll, Maldives.
DOI: 10.6073/pasta/c703a61ec22260d83ad855039a8f03af
title: Multi-locus DNA metabarcoding of western spotted skunk diet in the McKenzie River Ranger District of the Willamette National Forest from 2017-2019

description: There are increasing concerns about the declining population trends of small mammalian carnivores around the world. Their conservation and management is often challenging due to limited knowledge about their ecology and natural history. To address one of these deficiencies for western spotted skunks (Spilogale gracilis), we investigated their diet in the Oregon Cascades of the Pacific Northwest during 2017 –2019. We collected 130 spotted skunk scats opportunistically and with detection dog teams and identified prey items using DNA metabarcoding and mechanical sorting. Western spotted skunk diet consisted of invertebrates such as wasps, millipedes, and gastropods, vertebrates such as small mammals, amphibians, and birds, and plants such as Gaultheria, Rubus, and Vaccinium. Diet also consisted of items such as black-tailed deer that were likely scavenged. Comparison in diet by season revealed that spotted skunks consumed more insects during the dry season (June –August), particularly wasps (75% of scats in the dry season), and marginally more mammals during the wet season(September –May). We observed similar diet in areas with no record of human disturbance and areas with a history of logging at most spatial scales, but scats collected in areas with older forest within a skunk’s home range (1 km buffer) were more likely to contain insects. Western spotted skunks provide food web linkages between aquatic, terrestrial, and arboreal systems and serve functional roles of seed dispersal and scavenging. Due to their diverse diet and prey-switching, western spotted skunks may dampen the effects of irruptions of prey, such as wasps during dry springs and summers. By studying the natural history of western spotted skunks in the Pacific Northwest forests while they are still abundant, we provide key information necessary to achieve the conservation goal of keeping this common species common.
DOI: 10.6084/m9.figshare.12712814
title: TPW and Zenith Sky Temperature Data for Socorro, NM

description: Data collected at New Mexico Tech to study the relationship between sky temperature and precipitable water in the Socorro, NM climate zone.
DOI: 10.1285/i22390359v47p5
title: Introduction

description: "The Languages and Anti-Languages of Health Communication in the Age of Conspiracy Theories, Mis/Disinformation and Hate Speech" aims at analysing the languages of discourse of health communication, specifically health message design, addressing COVID-19 in both institutional and non-institutional media settings. The purpose of this special issue is to explore the "anti-languages" and counter-discourses endorsing (mis/dis-)information, and conspiracy theories which are in direct opposition to official discourses and challenge social and political hegemony. The discourse approach to health communication featured in the papers of this special issue will help understanding social responses to sickness and belief related to health.
DOI: 10.21227/eqk7-wa46
title: hyperspectral Dataset

description: Hyperspectral data set includesIndian Pines and Salinas A
DOI: 10.5066/p9ruoeh5
title: Topographic LiDAR surveys of rivers in Alaska, July 24-26, 2019

description: The U.S. Geological Survey in collaboration with the U.S. Army Corps of Engineers Cold Regions Research and Engineering Laboratory (CRREL) collected topographic LiDAR surveys of four rivers in Alaska from July 24-26, 2019 to support research related to remote sensing of river discharge. Data were acquired for the Matanuska, Chena, Salcha, and Tanana Rivers using a Riegl VQ-580 LiDAR. The LiDAR was installed on a Robinson R44 Raven helicopter in a HeliPod that was designed and operated by CRREL. The LiDAR data included as part of this release include: a bare earth digital elevation model (DEM) in GeoTiff format and lidar point files in laz format for each river surveyed. Additionally, CRREL reports for each river surveyed are included as part of this data release. Several imagery data sets were collected coincident with the lidar surveys but will be part of a separate data release.
DOI: 10.5281/zenodo.1289169
title: Supplementary Data For "Heterometallic Perovskite-Type Metal-Organic Framework With An Ammonium Cation: Structure, Phonons, And Optical Response"

description: Optimised structures of [NH<sub>4</sub>][Na<sub>0.5</sub>M<sub>0.5</sub>(COOH)<sub>3</sub>] (M = Al, Cr)

Phonon output for [NH<sub>4</sub>][Na<sub>0.5</sub>Cr<sub>0.5</sub>(COOH)<sub>3</sub>]

Gif of the T’(NH<sub>4</sub><sup>+</sup>) mode (no. 23). The c-axis is the vertical direction.

For further information please see the associated publication.
description: The authors acknowledge computing support from the UK national supercomputing service (Archer), via membership of the UK Materials Chemistry Consortium which is funded by EPSRC (EP/L000202).
DOI: 10.5281/zenodo.7254536
title: Southern High Latitude Temperature Proxies from the Late Eocene and Early Oligocene

description: Dataset of proxy records utilized in Comparison of Southern High Latitude Temperature Proxies to Model Outputs from the Eocene-Oligocene Transition by Tibbett et al., 2022
description: This research was funded by the U.S. National Science Foundation AGS-1844380 and OPP-1908548
DOI: 10.6073/pasta/1538ccf520d89c7a11c2c489d973b232
title: Infilled climate data for C1, Saddle, and D1, 1990 - 2013, hourly.

description: This serially complete dataset includes hourly, quality-controlled, infilled meteorological data for three sites at the Niwot Ridge LTER: C1, Saddle, and D1, representing subalpine, alpine, and high-alpine environments, respectively. Raw observations of air temperature, relative humidity, wind speed, and incoming shortwave radiation were subjected to a rigorous hierarchical quality control and infilling protocol to make a robust, continuous dataset. Incoming longwave radiation was estimated using air temperature, relative humidity, and incoming shortwave radiation. Precipitation data were accessed from the Niwot Ridge LTER quality controlled datasets and Kittel et al. (2015). Precipitation values from C1 and Saddle were then corrected for gage undercatch (C1) and overcatch (Saddle) based on observations of snow accumulation at the Niwot SNOTEL station and snow pits located near the met stations (D1 precipitation data were not corrected as there were no available observation of snow accumulation). Daily precipitation values were temporally disaggregated to the hourly time step of the dataset. This dataset was originally created to force a physics-base snow model and is suitable for use in other research models that require hourly forcing data. Please contact the dataset's creators or the LTER data manager if you have any questions regarding the data or its applicability/suitability to your project. Disclaimer: These data come as-is with no warranty. The user must decide whether or not to use different variables and time periods within the dataset and whether further processing is warranted. In general, the data quality is higher and there are fewer infilled values from 2000 to 2013. The higher number of infilled entries before 2000 may preclude the 1990–1999 period from being used in a given analysis. This is particularly true for relative humidity and incoming solar radiation. The Niwot Ridge LTER is not responsible for the methodological choices made by those using the data. For cross-validation statistics on the infilling procedure and further information on the protocol, please see Jennings et al. (2017) in The Cryosphere: Observations and simulations of the seasonal evolution of snowpack cold content and its relation to snowmelt and the snowpack energy budget. (https://doi.org/10.5194/tc-12-1595-2018)
DOI: 10.6084/m9.figshare.13599764.v4
title: Genetic Factors contributing to Late Adverse Musculoskeletal Effects in Childhood Acute Lymphoblastic Leukemia Survivors (Supplemental material).

description: A substantial number of survivors of childhood acute lymphoblastic leukemia (ALL) suffer from treatment-related late adverse effects. While multiple studies have identified the effects of chemotherapeutics and radiation therapy on musculoskeletal outcomes, few have investigated their associations with genetic factors.<br> Here<b> </b>we analyzed musculoskeletal complications in relation to common and rare genetic variants derived through whole-exome sequencing of the PETALE cohort. Top-ranking associations were further assessed through stratified and multivariate analyses. This study identified novel genetic variants associated with long-term musculoskeletal impairments in childhood ALL survivors that might lead to personalized prophylactic or therapeutic strategies.<br>
DOI: 10.5281/zenodo.4446609
title: GUV total ozone column and effective cloud transmittance from three Norwegian sites 1995-2019

description: Total ozone column (TOC) and effective cloud transmittance (eCLT) from GUV-511 in Oslo (Norway), GUV-541 from Andøya/Tromsø (Norway), and GUV-541 from Ny-Ålesund (Svalbard, Norway). Responsible institute: NILU - Norwegian Institute for Air Research<br> Collaborative institute: Norwegian Radiation and Nuclear Safety Authority, DSA Method described in: Dahlback, A. (1996), Measurements of biologically effective UV doses, total ozone abundances, and cloud effects with multichannel, moderate bandwidth filter instruments, Appl. Opt. 35, 6514–6521 1h average noon-time values, based on data with 1-minute time resolution. TOC retrievals from 305/320 nm channel ratio<br> eCLT retrievals from 340 nm channel Calibrations based on the FARIN2005-campaign and annual site visits with a travelling reference GUV instrument from DSA (https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2007JD009731) Funding: NILU - Norwegian Institute for Air Research, Norwegian Environment Agency, Norwegian Ministry of health and Care Services
DOI: 10.21227/mewp-g646
title: Denial of Service attacks in Programmable Logic Controllers

description: Dataset with diverse type of attacks in Programmable Logic Controllers:1- Denial of Service FloodingAmplification/Volumetric2- Man in the Middle
DOI: 10.3886/e125063v1
title: Data and Code for: Optimal Currency Areas with Labor Market Frictions

description: Data and codes to replicate results in "Optimal Currency Areas with Labor Market Frictions". Paper abstract: I study efficiency and optimal monetary policy in a two-country monetary union with frictional labor markets. With heterogeneity in labor market frictions, the constrained efficient allocation generically cannot be achieved even if productivity shocks affecting each country are the same. The second-best optimal policy targets smaller inflation and output gaps in the more sclerotic labor market. A quantitative calibration to the Eurozone implies welfare gains from redefining the union's inflation target to put more weight on its sclerotic members.
DOI: 10.25326/31
title: Sky Imager - P2OA-CRA station

description: Time series of L1A CRA Sky Imager of the Centre de Recherche Atmospheriques de Lannemezan (65) station.
DOI: 10.1285/i22390359v52p229
title: Case Communication at the European Court of Human Rights: Genre-based and Translation Perspectives

description: This study contributes to research on the discursive practices at the European Court of Human Rights (ECtHR), as descriptions of ECtHR language and translation policies are scant. The study combines genre-based and translation perspectives to outline the system of procedural genres, with a specific focus on a hitherto unresearched and semi-"occluded" (Swales 1996) genre of case communication. This genre takes on an important role in the procedural flow of documents as it marks the case acceptance by the Court, orients the following written procedure and represents the first instance of institutional legal translation in cases when the initial application is lodged in a language other than English or French, the ECtHR official languages. The findings identify two alternative generic templates and hypothesize that the template choice could derive from a potential reliance on the so-called situated cognition and could correlate with a different set of translational competences required, when transposing knowledge from the initial applications. The study supplements previous research on institutional legal translation at the ECtHR, casting light on its "hidden" dimension, as well as uncovering its imaginative and creative side through an overview of case communications dealing with Article 10 provisions – freedom of expression – that exact the highest level of translational expertise on the lawyers dealing with these texts as they frequently feature creative, profane and even taboo language.