cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pw83mw
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Guatemala",
 "TaxonKey is Holcosus Cope, 1862",
 "Year 2019-2023"
 ]
}

 The dataset includes 26 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005807-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/ppvr-pg94
title: Parkes observations for project P1342 semester 2024OCTS_01

description: We have discovered an eclipsing binary millisecond pulsar in image-plane searches. Follow-up work confirmed that the source has pulsations and a Fermi association, revealing that it is a millisecond pulsar (MSP). The MSP is in a compact binary orbit with an optical companion. The duration of the eclipses suggests that this is a ``spider'' system, with an eclipsing material. The formation and evolution of spider systems are still poorly understood. Timing of this system will allow us to constrain the orbit of the system so that we can explore the eclipse cut-off frequency and change in electron column density of the eclipse. It would also improve predictions of the eclipsing binary pulsar and MSP population detectable by upcoming, highly sensitive image-plane surveys at low frequencies using precursors to, and eventually, the Square Kilometre Array (SKA) itself. The detection of MSPs also provides compelling evidence that the Fermi gamma-ray excess is coming from thousands of MSPs.
DOI: 10.15468/dl.vpv5az
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Halophila baillonis Asch."
 ]
}

 The dataset includes 31 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005810-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srkn8d
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Machine Observation)",
 "TaxonKey is Charitospiza eucosma Oberholser, 1905",
 "Year 1985-2025"
 ]
}

 The dataset includes 62 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005811-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26030/ksgn-e439
title: IMR90 radiation bystander time-course experiment 0.5Gy alpha particle

description: The radiation bystander effect is an important component of the overall biological response of tissues and organisms to ionizing radiation. Little is known about the contribution of genome level changes in neighboring bystander cells to tissue and organ stress after irradiation. The timing of these changes is critical in the physiological context and these questions can only be answered by studying signaling and global transcriptomics in a chronological way. Here, we present a strategy to identify different biologically important signaling modules that act in concert in the radiation and bystander responses. We used time series gene expression analysis of normal human fibroblast cells measured at 0.5 hour, 1 hour, 2 hours, 4 hours, 6 hours and 24 hours after exposure to radiation coupled with a novel clustering method targeted to short time series, Feature Based Partitioning around medoids Algorithm (FBPA), to look for genes that were potentially co-regulated. This method uses biologically meaningful features of the expression profile and dimension augmentation to address the analysis of sparse data sets such as ours. We applied FBPA and Short Time series Expression Miner (STEM) to the same datasets and present the results of our comparisons using computational metrics as well as biological enrichment. Enrichment showed that gene expression in irradiated cells fell into broad categories of signal transduction, cell cycle/cell death and inflammation/immunity; but only FBPA clustered functions well. In bystander cells, the gene expression response was also broadly categorized into functions associated with cell communication and motility, signal transduction and inflammation; but neither STEM nor FBPA separated biological functions as well as in irradiated samples. Network analysis revealed that p53 and NF-kappaB were central players in gene expression in both irradiated and bystander gene clusters. Analysis of individual clusters also suggested new regulators of gene expression in the radiation and bystander response that may act at the epigenetic level such as histone deacetylases (HDAC1 and HDAC2) and methylases (KDM5B) that can act as strong transcription repressors. Based on these results, we propose a novel time series clustering method, FBPA, as a powerful approach that can be applied to sparse data sets (including genomic profiling data), where the choice of features selected for clustering and stringent statistical outcome analysis can augment our knowledge of the underlying cellular mechanisms in biological processes. There are 72 total samples, 4 corresponding biological replicates of IMR90 cells that were not irradiated (control=C), irradiated (alpha=A) and bystander (B), cells were harvested at 0.5 hour, 1 hour, 2 hours, 4 hours, 6 hours and 24 hours after treatment
DOI: 10.5281/zenodo.14775862
title: Arctic Biodiversity Indicators for the Holocene

description: An intial release of the Arctic Biodiversity Indicators data product and the associated tooling and webapp.
DOI: 10.5281/zenodo.14775863
title: Arctic Biodiversity Indicators for the Holocene

description: An intial release of the Arctic Biodiversity Indicators data product and the associated tooling and webapp.
DOI: 10.15468/dl.txqbzu
title: Occurrence Download

description: A dataset containing 24645 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 24645 records from 403 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005812-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24396/ordar-168
title: AppendixD-ResultsFlux-The_extraterrestrial_dust_accretion_rate_on_Earth_at_ Dome C, Antarctica: a_fresh_look_with_3He-Fénisse_EPSL

description: Table results giving the He isotopic compositions and total masses deduced by size range of cosmic dust from the CONCORDIA snow
DOI: 10.26030/7r5a-ym74
title: Human skin fibroblast mitochondrial depletion, 0.5 Gy alpha-particle

description: Mitochondrial DNA-depleted human skin fibroblasts (HSF rho0) with suppressed oxidative phosphorylation were characterized by significant changes in the expression of 2100 nuclear genes, encoding numerous protein classes, in NF-kappaB and STAT3 signaling pathways and by decreased activity of the mitochondrial death pathway, compared to the parent rho+ HSF. In contrast, the extrinsic TRAIL/TRAIL-Receptor-mediated death pathway remained highly active, and exogenous TRAIL induced higher levels of apoptosis in rho0 cells compared to rho+ HSF. Global gene expression analysis using microarray and quantitative RT-PCR demonstrated that expression levels of many growth factors and their adaptor proteins (FGF13, HGF, IGFBP4, IGFBP6, IGFL2), cytokines (IL6, IL17B, IL18, IL19, IL28B) and cytokine receptors (IL1R1, IL21R, IL31RA) were substantially decreased after mitochondrial depletion. Some of these genes were targets of NF-kappaB and STAT3, and their protein products could regulate the STAT3 signaling pathway. Alpha-irradiation induced expression of several NF-kappaB/STAT3 target genes, including IL1A, IL1B, IL6, PTGS2/COX2 and MMP12, in rho+ HSF, but this response was substantially decreased in rho0 HSF. Suppression of the IKK-NF-kappaB pathway by the small molecular inhibitor BMS-345541 and of the JAK2-STAT3 pathway by AG490 dramatically increased TRAIL-induced apoptosis in the control and irradiated rho+ HSF. Inhibitory antibodies against IL6, the main activator of JAK2-STAT3 pathway, added into the cell media, also increased TRAIL-induced apoptosis in rho+ HSF. However, NF-kappaB activation was partially lost in mitochondrial DNA-depleted HSF resulting in downregulation of the basal or radiation-induced expression of numerous NF-kappaB targets, further suppressing IL6-JAK2-STAT3, that in concert with NF-kappaB, regulated protection against TRAIL-induced apoptosis. There are 12 total samples, 3 biological replicates each of HSF rho+ and rho0 cells that were not irradiated (control=C) or irradiated (alpha=A). Cells were harvested at 4 hours after treatment.
DOI: 10.15468/dl.hrrh5f
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Pakistan, India)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (DD, NT, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Elattoneura Cowley, 1935"
 ]
}

 The dataset includes 84 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005814-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53rywx
title: Occurrence Download

description: A dataset containing 22116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Bromus tectorum L."
 ]
}

 The dataset includes 22116 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005815-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26030/w6hw-st76
title: Bystander response to 0.5 Gy of alpha-particles in a human 3-dimensional skin model in 16h after exposure to ionizing radiation

description: Ionizing radiation (IR) not only affects cells that are directly irradiated but also their non-irradiated neighbors, which show responses known as bystander effects. While bystander and direct responses have several common end points including apoptosis and micronucleation, chromatin remodeling and altered levels or activities of regulatory proteins, they can be quantitatively and qualitatively different. The majority of studies of radiation bystander effects have utilized 2-dimensional in vitro systems, but we have recently demonstrated such effects in EPI-200 (Mat-Tek, Ashland, MA), a 3-dimensional tissue model that precisely imitates the structure and function of human epidermis. Global gene expression is a powerful tool for uncovering both fundamental signaling processes and the mechanistic basis of cellular or physiological effects. By exposing only a thin strip across the center of the EPI-200 tissue, we have been able to measure global gene expression responses in bystander cells located at 0.125 and 0.625 um from the irradiation line, in 16h after irradiation. The data were analyzed using BRB-Array Tools (NIH), and further network analysis was performed with IPA (Ingenuity). Significantly responding genes were identified at the both distances. For instance, all sets demonstrated upregulation of two key enzymes of the lipid biosynthesis, UGT1 and PITPNB, and downregulation of proapoptotic proteins: BAX and ARHGEF5. In contrast, several proteins involved in transcriptional repression (CHD6, CHD8 andWRNIP1) were strongly upregulated suggesting a rearrangement in the gene transcription. These changes suggest an activation of bystander mechanisms different from those observed in 2-dimensional cell cultures. Radiation induced gene expression in 3-dimensional tissue model, Epi-200, was measured in 16 hours after exposure to 0.5 Gy of alpha-particles. Three independent experiments were performed for the samples collected at different distances from the irradiation line (125-625 and 625-1125 um) using three tissue fragments per a data point.
DOI: 10.15468/dl.22mmm3
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Pakistan, India)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (DD, NT, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Elattoneura Cowley, 1935"
 ]
}

 The dataset includes 84 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005816-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jn385d
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Pakistan, India)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (DD, NT, NE)",
 "OccurrenceStatus is Present",
 "TaxonKey is Elattoneura Cowley, 1935"
 ]
}

 The dataset includes 84 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005818-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s45jaq
title: Occurrence Download

description: A dataset containing 2181 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Xenotriccus callizonus Dwight & Griscom, 1927"
 ]
}

 The dataset includes 2181 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005819-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng4jbu
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vampyrum spectrum (Linnaeus, 1758)"
 ]
}

 The dataset includes 338 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005821-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14775886
title: Elemental Nd Bottom-up approach model data

description: bottomupNddata.xlsx list all inculded file along with what data is in them. This file contains the output from 1D and 3D model runs
DOI: 10.5281/zenodo.14775887
title: Elemental Nd Bottom-up approach model data

description: bottomupNddata.xlsx list all inculded file along with what data is in them. This file contains the output from 1D and 3D model runs
DOI: 10.5281/zenodo.14774623
title: Prepared sample datasets for use by the benchcompress project

description: These are some data files that are used by the benchcompress project
DOI: 10.5281/zenodo.14774624
title: Prepared sample datasets for use by the benchcompress project

description: These are some data files that are used by the benchcompress project

 

lim_et_al_2024.01.concat.npy is a portion of the data found at 



https://zenodo.org/records/10457508
DOI: 10.5281/zenodo.14775916
title: Prepared sample datasets for use by the benchcompress project

description: These are some data files that are used by the benchcompress project
DOI: 10.15468/dl.y3d5kg
title: Occurrence Download

description: A dataset containing 219743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 219743 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005809-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10621974
title: Daftar Pengadilan Indonesia
DOI: 10.15468/dl.hwn6c5
title: Occurrence Download

description: A dataset containing 125029 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sceloporus occidentalis Baird & Girard, 1852"
 ]
}

 The dataset includes 125029 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005817-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eazg56
title: Occurrence Download

description: A dataset containing 812871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Motacilla flava Linnaeus, 1758)",
 "OccurrenceStatus is one of (Present)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is Europe",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 812871 records from 1912 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005820-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55svyy
title: Occurrence Download

description: A dataset containing 370 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thlypopsis pectoralis (Taczanowski, 1884)"
 ]
}

 The dataset includes 370 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039349-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tu8rjx
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is Nepal",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Saxicola ferreus J.E.Gray & G.R.Gray, 1847",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 160 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006507-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afpdxz
title: Occurrence Download

description: A dataset containing 8394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alectoris barbara (Bonnaterre, 1790)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 8394 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016405-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9baxwq
title: Occurrence Download

description: A dataset containing 1581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Thryophilus nicefori (Meyer de Schauensee, 1946)"
 ]
}

 The dataset includes 1581 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025800-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbeedl
title: Occurrence Download

description: A dataset containing 148807 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canis Linnaeus, 1758"
 ]
}

 The dataset includes 148807 records from 414 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006507-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pd9pcn
title: Occurrence Download

description: A dataset containing 1243702 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((35.924964333333335 48.58410666666667, 35.924964333333335 65.67073733333334, 1.8796086666666671 65.67073733333334, 1.8796086666666671 48.58410666666667, 35.924964333333335 48.58410666666667))",
 "EventDate is 2019-01-01,2019-01-31"
 ]
}

 The dataset includes 1243702 records from 289 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025799-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdjow5
title: Occurrence Download

description: A dataset containing 7253 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Agave L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7253 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006507-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.