cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/252
title: Spoofing and Anti-Spoofing (SAS) corpus v1.0
title: SAS-VCTK v1.0

description: This dataset is associated with the paper "'SAS: A speaker verification spoofing database containing diverse attacks': presents the first version of a speaker verification spoofing and anti-spoofing database, named SAS corpus. The corpus includes nine spoofing techniques, two of which are speech synthesis, and seven are voice conversion. We design two protocols, one for standard speaker verification evaluation, and the other for producing spoofing materials. Hence, they allow the speech synthesis community to produce spoofing materials incrementally without knowledge of speaker verification spoofing and anti-spoofing. To provide a set of preliminary results, we conducted speaker verification experiments using two state-of-the-art systems. Without any anti-spoofing techniques, the two systems are extremely vulnerable to the spoofing attacks implemented in our SAS corpus". N.B. the files in the following fileset should also be taken as part of the same dataset as those provided here: Wu et al. (2017). Key files for Spoofing and Anti-Spoofing (SAS) corpus v1.0, [dataset]. University of Edinburgh. The Centre for Speech Technology Research (CSTR). http://hdl.handle.net/10283/2741
description: This item contains: 14 tar.gz zipped folders containing the core data and 1 README.txt file with details about the dataset and instructions about contacting Zhizheng Wu to get access to the files cm_test.ndx, cm_develop.ndx and cm_train.ndx (note that these three files will be added to the dataset in the near future).
DOI: 10.7488/ds/2896
title: Dense gas flow simulations in ultra-tight confinement
DOI: 10.7488/ds/2883
title: ATEC manuscript 1 - supporting data: "The value of Sentinel-2 spectral bands for the assessment of winter wheat growth and development"
DOI: 10.7488/ds/2329
title: Up or down? Resolving agreement in copular sentences

description: These files contain the anonymised raw data from 7 experiments developed and run for the BA-funded project "Up or Down? Resolving agreement in copular clauses. There are 2 sets of data - one from a production task and one from a grammaticality judgment task - for each of Dutch, German, and Faroese. There is 1 set of data from a grammaticality judgment task for Icelandic. The study investigated possible patterns of agreement in copular sentences in which there were two nominals different in either person or number or both (e.g. "The source of the rumour was/were your neighbours"; "My only hope is/are you"). The particular focus of the study was the possible contrasts between agreement with 3rd person pronouns and non-3rd person pronouns ("The problem is/are they" vs "The problem is/are you"). In all of the languages investigated in the study (Dutch, German, Faroese, Icelandic) prior research indicated that at least some speakers produce agreement for number with the second noun phrase ("The source of the rumour were your neighbours") in contrast to English, where agreement with the first noun phrase is strongly preferred. What this study adds is information about possibilities for person agreement.
description: README.txt A summary of the contents of all the data files FAR01Prod.csv Data from the production (cloze task) study on Faroese agreement FAR01Rating.csv Data from the rating study ("thermometer rating") on Faroese agreement GER02Prod.csv Data from the production (cloze task) study on German agreement GER02Rating.csv Data from the rating study ("thermometer rating") on German agreement ICE01Rating.csv Data from the rating study ("thermometer rating") on Icelandic agreement NL02Prod.csv Data from the production (cloze task) study on Dutch agreement NL02Rating.csv Data from the rating study ("thermometer rating") on Dutch agreement
DOI: 10.7488/ds/2876
title: Birth weight associations with DNA methylation differences in an adult population
title: Birthweight EWAS Summary Statistics: Set 1, Set 2 and meta-analysis

description: The Developmental Origins Health and Disease (DOHaD) theory predicts that prenatal and early life events shape adult health outcomes. Birth weight is a useful indicator of the foetal experience, and has been associated with multiple adult health outcomes. DNA methylation (DNAm) is one plausible mechanism behind the relationship of birth weight to adult health. Through data linkage between Generation Scotland and historic Scottish birth cohorts, and birth records held through the NHS Information and Statistics Division, a sample of 1,757 individuals with available birth weight and DNAm data was derived. Epigenome-wide association studies (EWAS) were performed in two independently generated DNAm subgroups (nSet 1=1, 395, nSet2=362), relating adult DNAm from whole blood to birth weight. Meta-analysis yielded one genome-wide significant CpG site (p=5.97x10-9), cg00966482. There was minimal evidence for attenuation of the effect sizes for the lead loci upon adjustment for numerous potential confounder variables (body mass index, educational attainment, and socioeconomic status). Associations between birth weight and epigenetic measures of biological age were also assessed. Associations between lower birth weight and higher Grim Age acceleration (p(FDR)=0.0036) and shorter DNAm-derived telomere length (p(FDR)=0.0017) are described, although results for three other epigenetic clocks were null. Our results provide support for an association between birth weight and DNAm both locally at individual CpG sites and globally via biological ageing estimates.
DOI: 10.7488/ds/2740
title: St Cecilias 1812 Hall

description: A Scan of the 1812 Hall at St. Cecilia's Hall, 8 Scan locations, captured with a BLK 360, registered using Autodesk Recap Pro, exported to .e57 file format.
DOI: 10.7488/ds/2882
title: Quantification of Whisky Congeners by 1H NMR Spectroscopy
title: 1H NMR spectra of whisky

description: The data set contains 1H NMR spectra in four groups: Commercial Samples; Custom Compound Standards; Limit of Quantification and Detection; Model Mixtures.
DOI: 10.7488/ds/2429
title: Manual and automatic labels for version 1.0 of UXTD, UXSSD, and UPX core data -- version 1.0
title: Labels for UXTD-Core-1.0, UXSSD-Core-1.0, and UPX-Core-1.0 - version 1.0

description: UltraSuite is a repository of ultrasound and acoustic data from child speech therapy sessions. The current release includes three data collections, one from typically developing children (UXTD) and two from children with speech sound disorders (UXSSD and UPX). This dataset contains additional materials for version 1.0 of Ultrax Typically Developing Children (UXTD), Ultrax Speech Sound Disorders (UXSSD), and UltraPhonix (UPX). It includes transcriptions, labels provided by speech therapists, reference labels with word boundaries, and automatically-derived speaker labels (therapist or child), phone boundary labels, and word boundary labels.
DOI: 10.7488/ds/2914
title: Bacterial flagellar motor as a multimodal biosensor_data supporting figures

description: Data set supports figures 3, 5 and 6 of the published manuscript "Bacterial flagellar motor as a multimodal biosensor". Folder "Figure 3": "Traces": Contains .txt files with Fourier transform (rotational speed) of bead coordinates for 1 Wild type (WT) cell, and 4 mutant strain (delCheZ) cells. Time is given in seconds, speed in Hz. Folder also contains .txt file with data format explanation. The traces were used to calculate biases plotted in figure 3B. 3B_Biases.xlsx: Points used for plotting figure 3B. Bias was calculated from the traces described above with 5 second sliding window. Biases are given for 4 delCheZ cells and 1 WT cell. Folder "Figure 5": "5C traces": folder contains .txt files (1 file for an individual cell) with rotational speed (in Hz) sampled at 100 points per second rate. Folder also contains .txt file with data format explanation. Individual traces were used for calculating mean trace with the standard deviation plotted in Fig. 5C. 5B and 5C points.xlsx: Points used for plotting figures 5B and 5C (individual traces for 5B were kindly provided by Dr. Ashley Nord). Normalised mean speed is given. Folder "Figure 6": Contains points used for figure 6. CW and CCW speed in Hz is given for different experimental buffers and bead sizes (indicated in left column).
DOI: 10.7488/ds/2916
title: The proteomic landscape of centromeric chromatin reveals an essential role for the Ctf19CCAN complex in meiotic kinetochore assembly (2020)

description: This is supplementary data accompanying a manuscript submission. Recent work on the same topic is described in a pre-print: "The proteomic landscape of centromeric chromatin reveals an essential role for the Ctf19CCAN complex in meiotic kinetochore assembly" Weronika E. Borek, Nadine Vincenten, Eris Duro, Vasso Makrantoni, Christos Spanos, Krishna K. Sarangapani, Flavia de Lima Alves, David A. Kelly, Charles L. Asbury, Juri Rappsilber, Adele L. Marston bioRxiv 2020.06.23.167395; doi: https://doi.org/10.1101/2020.06.23.167395 .
DOI: 10.7488/ds/2920
title: A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data

description: Data Supporting the paper de la Fuente, J et al. "A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data" https://doi.org/10.1038/s41562-020-00936-2 . All files are plain text.
DOI: 10.7488/ds/2826
title: Face Coverings, Aerosol Dispersion and Mitigation of Virus Transmission Risk. Dataset 1: videos, images and spirometry results
title: Mask Effectiveness As Part Of COVID-19 Response - BOS Airflow Tests - Dataset 1 of 4

description: "Face Coverings, Aerosol Dispersion and Mitigation of Virus Transmission Risk" Supplementary Information. The information is grouped into four, zipped, datasets, all of which contain the same ReadMe.txt and SupplementaryMaterialIndex.xlsx files: Dataset 1: videos, images and spirometry results (https://doi.org/10.7488/ds/2826); Dataset 2: raw and processed data for tests 1 - 90 (https://doi.org/10.7488/ds/2830); Dataset 3: raw and processed data for tests 97 - 174 (https://doi.org/10.7488/ds/2832); Dataset 4: raw and processed data for tests 175 - 280 (https://doi.org/10.7488/ds/2831). For further detail, please download the ReadMe.txt file from any dataset. The abstract of the pre-print can be found by navigating up one level to the Collection page.
description: see ReadMe.txt
DOI: 10.7488/ds/2864
title: Gap filled informal settlement fire experiment (Test 4)

description: This dataset presents Test 4 (Gap filled experiment). Different from Baseline experiment, the leakages at the walls and roofs were filled, and the other conditions are totally the same with Baseline.
DOI: 10.7488/ds/2878
title: Passively morphing trailing-edges for load alleviation in tidal turbines
title: Morphing blades

description: A rigid and a morphing blade with a flap were tested at heave in uniform flow. The flap was located at x/c=0.75 from the leading-edge of the morphing blade. The water flume, where the experiments were carried, is located at Sanderson fluids lab of the University of Edinburgh. Two linear motors were utilised to heave the blades. The blades had a chord of 0.1 m and a span of 0.4 m. They were manufactured with a NACA 0012 profile and tested at Re=50,000. Flow is two dimensional over the blade. Tested cases include those considered significant for a tidal energy regime. Force measurements were taken at reduced frequencies of k=0.1, 0.3 and 0.5 and heaving amplitudes of 2h_0/c = 0.1, 0.3 and 0.5 were tested. Particle image velocimetry data (PIV) was recorded at ¾ of the span of the blade with a field of view that includes one chord downstream of the blade. The selected cases for PIV were 2h_0/c = 0.3 at k=0.1, 0.3, 0.5 and 2h_0/c=0.5 at k=0.5. Results are in preparation for a journal manuscript.
DOI: 10.7488/ds/2817
title: Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - OSCA EWAS Proteins

description: This dataset represents one of five datasets which correspond to the study: "Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults". These datasets represent association studies on the levels of the same set of 70 inflammatory proteins. Each dataset represents one of five distinct methods used to perform genome-wide and epigenome-wide association studies on these protein levels. These methods are: Linear Regression GWAS, Linear Regression EWAS, OSCA EWAS, BayesR+ GWAS and BayesR+ EWAS. These analyses were performed as part of the Lothian Birth Cohort 1936 Study. This data relates to summary statistics for EWAS of 70 Olink inflammation proteins - performed by OSCA EWAS.
DOI: 10.7488/ds/2915
title: The emergence of word order conventions: improvisation, interaction and transmission

description: We present an experimental paradigm in which initially-improvised silent gesture is both used for communication and culturally transmitted through artificial generations of lab participants. In experiments 1 and 2 we investigate the respective contributions of communicative interaction and cultural transmission on natural word order behaviour. We show that both interaction and iterated learning lead to a simplification of the word order regime, and the way in which this unfolds over time is surprisingly similar under the two mechanisms. The resulting dominant word order is mostly SVO, the order of the native language of our participants. In experiment 3, we manipulate the frequency of different semantic event types, and show that this can allow SOV order, rather than SVO order, to conventionalise.
description: The video data stored in this repository are from a lab-based experiment in which hearing English speaking participants were asked to communicate with a partner using only gesture and no speech. Participants took part in pairs, in either an interaction+transmission (exp. 1 and exp 3a) or an interaction-only setup (exp 2 and exp3b). In both designs, 6 generations were recorded for each session (in 6x2 separate videos, one for each communicating participant). The session numbers correspond to the ID tags in the data files. The session numbers are unique, and are organised as follows: exp1: ID 25--32 exp2: ID 1--12 exp3a: ID 33--40 exp3b: ID 13--24 For instance, to find the first generation of the first session of exp 2, you would navigate to the folder for exp2, and for the corresponding ID (1). In that folder you will find two videos labeled '01A' and 01B'. All participants included here gave consent for their video data to be shared publicly. For two full sessions (IDs 22 and 23) as well as four generations (gens 1 and 2 of ID 37, and gen 5 and 6 of ID 38), participants did not and so their data is not included in this dataset. The corresponding analysis data and linked manuscript reporting the study can be found at https://osf.io/4jk32/.
DOI: 10.7488/ds/2859
title: LIVE-PAINT Supporting Datasets

description: We present LIVE-PAINT, a new approach to super-resolution fluorescent imaging inside live cells. In LIVE-PAINT only a short peptide sequence is fused to the protein being studied, unlike conventional super-resolution methods, which rely on directly fusing the biomolecule of interest to a large fluorescent protein, organic fluorophore, or oligonucleotide. LIVE-PAINT works by observing the blinking of localized fluorescence as this peptide is reversibly bound by a protein that is fused to a fluorescent protein. We have demonstrated the effectiveness of LIVE-PAINT by imaging a number of different proteins inside live S. cerevisiae. Not only is LIVE-PAINT widely applicable, easily implemented, and the modifications minimally perturbing, but we also anticipate it will extend data acquisition times compared to those previously possible with methods that involve direct fusion to a fluorescent protein.
description: Please refer to README file for information about the data contained in each file.
DOI: 10.7488/ds/2834
title: Genome-wide association studies identify 137 loci for DNA methylation biomarkers of aging

description: These files contain summary statistics for meta-analysis GWAS of six traits in European, African and Trans-Ancestry. There are 18 files in total - 6 for each ancestry by 3 for each trait. The traits are DNA methylation proxies for granulocyte proportions (gran) and plasminogen activator inhibitor-1 (PAI1), and four epigenetic age acceleration measures of: PhenoAge, GrimAge, HannumAge, and Intrinsic Epigenetic Age Acceleration (IEAA).
DOI: 10.7488/ds/2941
title: Disease burden estimates of RSV associated with acute respiratory infections in adults with comorbidity
title: RSV-ARI burden in adults with comorbidity

description: Respiratory syncytial virus associated acute respiratory infection (RSV-ARI) constitutes a substantial disease burden in adults, especially in those with comorbidities. We aimed to identify all studies worldwide investigating the disease burden of RSV-ARI in adults with comorbidities. We estimated the community incidence, hospitalisation rate and in-hospital case fatality ratio (hCFR) of RSV-ARI in adults with comorbidities based on a systematic review of studies published between January 1996 and March 2020. We also investigated the strength of the association between RSV-ARI and any comorbidity in adults. Meta-analyses based on random effects model were carried out to generate the estimates. The disease burden of RSV-ARI among adults with comorbidity is substantial with limited data available, especially for developing countries; appropriate prevention and management strategies are needed to reduce this burden.
DOI: 10.7488/ds/2829
title: Imaging Moving Targets for a Forward Scanning SAR without Radar Motion Compensation
DOI: 10.7488/ds/2815
title: SUPERSEDED - Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults - BayesR+ GWAS Proteins

description: ## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/2854 ## This dataset represents one of five datasets which correspond to the study: "Multi-method genome and epigenome wide studies of inflammatory protein levels in healthy older adults". These datasets represent association studies on the levels of the same set of 70 inflammatory proteins. Each dataset represents one of five distinct methods used to perform genome-wide and epigenome-wide association studies on these protein levels. These methods are: Linear Regression GWAS, Linear Regression EWAS, OSCA EWAS, BayesR+ GWAS and BayesR+ EWAS. These analyses were performed as part of the Lothian Birth Cohort 1936 Study. This data relates to summary statistics for GWAS of 70 Olink inflammation proteins - performed by BayesR+.
DOI: 10.7488/ds/2924
title: Bursting equilibria and travelling waves in Kolmogorov flow

description: This dataset contains equilibrium and travelling wave solutions for 2D Kolmogorov flow (monochromatically forced with wavenumber n=4) at a Reynolds number Re=40. These solutions are also documented in the manuscript “Revealing the state space of turbulence using machine learning” (in review) and have all been obtained from within intermittent bursting events. Each solution is stored in a binary file containing a single record (a scalar vorticity field of dimension 128x128). Example python scripts are included which demonstrate how the files can be read and visualised.
DOI: 10.7488/ds/2875
title: Turning a yield-stress calcite suspension into a shear-thickening one by tuning inter-particle friction

description: We show that a suspension of non-Brownian calcite particles in glycerol-water mixtures can be tuned continuously from being a yield-stress suspension to a shear-thickening suspension without a measurable yield stress by the addition of various surfactants. We interpret our results within a recent theoretical framework that models the rheological effects of stress-dependent constraints on inter-particle motion. Bare calcite particle suspensions are found to have finite yield stresses. In these suspensions, frictional contacts that constrain inter-particle sliding form at an infinitesimal applied stress and remain thereafter, while adhesive bonds that constrain inter-particle rotation are broken as the applied stress increases. Adding surfactants reduces the yield stress of such suspensions. We show that, contrary to the case of surfactant added to colloidal suspensions, this effect in non-Brownian suspensions is attributable to the emergence of a finite onset stress for the formation of frictional contacts. Our data suggest that the magnitude of this onset stress is set by the strength of surfactant adsorption to the particle surfaces, which therefore constitutes a new design principle for using surfactants to tune the rheology of formulations consisting of suspensions of adhesive non-Brownian particulates.
description: Data and plotting scripts for figures in "Turning a yield-stress calcite suspension into a shear-thickening one by tuning inter-particle friction". For details see documentation included, e.g., "about_Fig1.txt"
DOI: 10.7488/ds/2860
title: GenomeArtiFinder variant include list
title: Detecting oncogenic selection through biased allele retention in The Cancer Genome Atlas

description: Background: The loss of genetic diversity in segments over a genome (loss-of-heterozygosity, LOH) is a common occurrence in many types of cancer. By analysing patterns of preferential allelic retention during LOH in approximately 10,000 cancer samples from The Cancer Genome Atlas (TCGA), we sought to systematically identify genetic polymorphisms currently segregating in the human population that are preferentially selected for, or against during cancer development. Results: Experimental batch effects and cross-sample contamination were found to be substantial confounders in this widely used and well studied dataset. To mitigate these we developed a generally applicable classifier to quantify contamination and other abnormalities. We provide these results as a resource to aid further analysis of TCGA whole exome sequencing data. In total, 1,678 pairs of samples (14.7%) were found to be contaminated or affected by systematic experimental error. After filtering, our analysis of LOH revealed an overall trend for biased retention of cancer-associated risk alleles previously identified by genome wide association studies. Analysis of predicted damaging germline variants identified highly significant oncogenic selection for recessive tumour suppressor alleles. These are enriched for biological pathways involved in genome maintenance and stability. Conclusions: Our results identified predicted damaging germline variants in genes responsible for the repair of DNA strand breaks and homologous repair as the most common targets of allele biased LOH. This suggests a ratchet-like process where heterozygous germline mutations in these genes reduce the efficacy of DNA double-strand break repair, increasing the likelihood of a second hit at the locus removing the wild-type allele and triggering an oncogenic mutator phenotype.
description: GRCh38.variant.inclist.tsv is a tab delimited file with single line header. chr - chromosome identifier pos - chromosome coordinate position ref - nucleotide in the reference genome alt - polymorphism alternate nucleotide rare - boolean 1=rare 0=not rare GRCh38.variant.inclist.tsv.md5sum contains the md5 checksum for the GRCh38.variant.inclist.tsv file
DOI: 10.7488/ds/2922
title: Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life

description: Genome-wide summary data for the publication of "Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life".