cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26736684
title: Additional file 5 of Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage

description: Additional file 5. DTU Functional enrichment results. This supplementary file is a Microsoft Excel file with gprofiler results of all DTU genes with a sheet for each comparison. Columns are as follows: Query - all results were processed as individual queries. Significant - all terms in this table were kept if they had a significance of below 0.05. P_value - p-value from Fisher’s one-tailed test. Term_size - number of genes in this term size. Query_size - number of genes for this specific query. Intersection_size - number of genes in the intersection between term and query. Precision - statistical precision for this term. Recall - statistical recall for this term. Term_id - Identification number for this term. Source - Data source for this term. Term_name - Name for this term. Effective_domain_size - Domain size for this term. Source_order - Order for this term. Parents - Any parent terms for this term.
DOI: 10.6084/m9.figshare.26736684.v1
title: Additional file 5 of Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage

description: Additional file 5. DTU Functional enrichment results. This supplementary file is a Microsoft Excel file with gprofiler results of all DTU genes with a sheet for each comparison. Columns are as follows: Query - all results were processed as individual queries. Significant - all terms in this table were kept if they had a significance of below 0.05. P_value - p-value from Fisher’s one-tailed test. Term_size - number of genes in this term size. Query_size - number of genes for this specific query. Intersection_size - number of genes in the intersection between term and query. Precision - statistical precision for this term. Recall - statistical recall for this term. Term_id - Identification number for this term. Source - Data source for this term. Term_name - Name for this term. Effective_domain_size - Domain size for this term. Source_order - Order for this term. Parents - Any parent terms for this term.
DOI: 10.6084/m9.figshare.26736687
title: Additional file 6 of Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage

description: Additional file 6. DTU-specific Functional enrichment results. This supplementary file is a Microsoft Excel file with gprofiler results of DTU-specifc genes with a sheet for each comparison. Columns are as follows: Query - all results were processed as individual queries. Significant - all terms in this table were kept if they had a significance of below 0.05. P_value - p-value from Fisher’s one-tailed test. Term_size - number of genes in this term size. Query_size - number of genes for this specific query. Intersection_size - number of genes in the intersection between term and query. Precision - statistical precision for this term. Recall - statistical recall for this term. Term_id - Identification number for this term. Source - Data source for this term. Term_name - Name for this term. Effective_domain_size - Domain size for this term. Source_order - Order for this term. Parents - Any parent terms for this term.
DOI: 10.6084/m9.figshare.26736687.v1
title: Additional file 6 of Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage

description: Additional file 6. DTU-specific Functional enrichment results. This supplementary file is a Microsoft Excel file with gprofiler results of DTU-specifc genes with a sheet for each comparison. Columns are as follows: Query - all results were processed as individual queries. Significant - all terms in this table were kept if they had a significance of below 0.05. P_value - p-value from Fisher’s one-tailed test. Term_size - number of genes in this term size. Query_size - number of genes for this specific query. Intersection_size - number of genes in the intersection between term and query. Precision - statistical precision for this term. Recall - statistical recall for this term. Term_id - Identification number for this term. Source - Data source for this term. Term_name - Name for this term. Effective_domain_size - Domain size for this term. Source_order - Order for this term. Parents - Any parent terms for this term.
DOI: 10.6084/m9.figshare.26736690
title: Additional file 7 of Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage

description: Additional file 7. DTU genes that are known neurological disease risk genes. This supplementary file is an Excel file of neurological disease risk genes and which DTU design we used to identify them. We compared significant DTU genes to lists of AD, cross-psychiatric disorder, and UAB’s Center for Precision Animal Modeling case genes (C-PAM) to identify disease genes.
DOI: 10.6084/m9.figshare.26736690.v1
title: Additional file 7 of Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage

description: Additional file 7. DTU genes that are known neurological disease risk genes. This supplementary file is an Excel file of neurological disease risk genes and which DTU design we used to identify them. We compared significant DTU genes to lists of AD, cross-psychiatric disorder, and UAB’s Center for Precision Animal Modeling case genes (C-PAM) to identify disease genes.
DOI: 10.15468/dl.xh99mp
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Ficus gigantosyce Dugand"
 ]
}

 The dataset includes 51 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072980-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26074264
title: Additional file 2 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 2. Table S1. Key functions of currently available mRNA isoform/AS-NMD analysis programs.
DOI: 10.6084/m9.figshare.26074264.v1
title: Additional file 2 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 2. Table S1. Key functions of currently available mRNA isoform/AS-NMD analysis programs.
DOI: 10.6084/m9.figshare.26736714.v1
title: Additional file 3 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 3. Table S2. CHX-responsive AS-NMD events.
DOI: 10.6084/m9.figshare.26736714
title: Additional file 3 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 3. Table S2. CHX-responsive AS-NMD events.
DOI: 10.6084/m9.figshare.26736717
title: Additional file 4 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 4. Table S3. Ranked gene trajectory clusters.
DOI: 10.6084/m9.figshare.26736717.v1
title: Additional file 4 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 4. Table S3. Ranked gene trajectory clusters.
DOI: 10.6084/m9.figshare.26736720
title: Additional file 5 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 5. Table S4. Facilitating AS-NMD events in the TRE-Ngn2 differentiation dataset showing significant positive correlation between NMD-protective splicing patterns and gene expression with P &lt; 0.05 and FDR &lt; 0.1.
DOI: 10.6084/m9.figshare.26736720.v1
title: Additional file 5 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 5. Table S4. Facilitating AS-NMD events in the TRE-Ngn2 differentiation dataset showing significant positive correlation between NMD-protective splicing patterns and gene expression with P &lt; 0.05 and FDR &lt; 0.1.
DOI: 10.6084/m9.figshare.26736723
title: Additional file 6 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 6. Table S5. Metascape results.
DOI: 10.6084/m9.figshare.26736723.v1
title: Additional file 6 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 6. Table S5. Metascape results.
DOI: 10.6084/m9.figshare.26736729
title: Additional file 8 of Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons

description: Additional file 8. Table S6. Facilitating AS-NMD events in developing dentate gyrus granule cells.
DOI: 10.15468/dl.2cj8fb
title: Occurrence Download

description: A dataset containing 7985 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neobisium carcinoides (Hermann, 1804)"
 ]
}

 The dataset includes 7985 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005144-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6pzuu
title: Occurrence Download

description: A dataset containing 410029 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myiopsitta monachus (Boddaert, 1783)"
 ]
}

 The dataset includes 410029 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078894-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23rkcx
title: Occurrence Download

description: A dataset containing 1210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND",
 "TaxonKey is Talicada nyseus (Guérin-Méneville, 1843)"
 ]
}

 The dataset includes 1210 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038801-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmfwtc
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-76.0819962000000061 43.0402944000000005, -76.0819962000000061 43.0409823099999969, -76.0819962000000061 43.0412689400000019, -76.0819962000000061 43.0420141800000025, -76.0819962000000061 43.0425301100000013, -76.0819962000000061 43.0429027300000016, -76.0819962000000061 43.0434473299999993, -76.0819962000000061 43.0439346000000000, -76.0819962000000061 43.0441639000000009, -76.0819962000000061 43.0446798299999998, -76.0819962000000061 43.0449377999999996, -76.0812204900000069 43.0449377999999996, -76.0807608100000010 43.0449377999999996, -76.0803585900000030 43.0449377999999996, -76.0798414500000035 43.0449377999999996, -76.0791231999999980 43.0449377999999996, -76.0791231999999980 43.0443932000000018, -76.0791231999999980 43.0437339599999973, -76.0791231999999980 43.0430747099999991, -76.0791231999999980 43.0425301100000013, -76.0791231999999980 43.0418421999999978, -76.0791231999999980 43.0415269100000017, -76.0791231999999980 43.0408963200000017, -76.0791231999999980 43.0402944000000005, -76.0799276399999940 43.0402944000000005, -76.0805884300000059 43.0402944000000005, -76.0811630299999990 43.0402944000000005, -76.0819962000000061 43.0402944000000005))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101542-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3w4bmx
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mantidactylus ambohimitombi Boulenger, 1919"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008511-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgjfxs
title: Occurrence Download

description: A dataset containing 71731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Anthracothorax nigricollis (Vieillot, 1817))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 71731 records from 197 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038800-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kevh2c
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-122.1538785000000047 37.7268066000000033, -122.1538785000000047 37.7280928699999976, -122.1538785000000047 37.7296817900000008, -122.1538785000000047 37.7314977099999993, -122.1538785000000047 37.7327083099999996, -122.1538785000000047 37.7343728999999968, -122.1525189299999994 37.7343728999999968, -122.1510084599999999 37.7343728999999968, -122.1491958900000014 37.7343728999999968, -122.1470056999999940 37.7343728999999968, -122.1454197000000050 37.7343728999999968, -122.1439092300000056 37.7343728999999968, -122.1420966600000071 37.7343728999999968, -122.1410393200000044 37.7343728999999968, -122.1399064699999997 37.7343728999999968, -122.1385468999999944 37.7343728999999968, -122.1385468999999944 37.7334649399999975, -122.1385468999999944 37.7322543399999972, -122.1385468999999944 37.7309680700000030, -122.1385468999999944 37.7296817900000008, -122.1385468999999944 37.7280928699999976, -122.1385468999999944 37.7268066000000033, -122.1405106600000039 37.7268066000000033, -122.1418700800000039 37.7268066000000033, -122.1435316099999966 37.7268066000000033, -122.1445889400000056 37.7268066000000033, -122.1461749399999945 37.7268066000000033, -122.1473833200000030 37.7268066000000033, -122.1493469400000009 37.7268066000000033, -122.1507818900000046 37.7268066000000033, -122.1524434100000036 37.7268066000000033, -122.1538785000000047 37.7268066000000033))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 425 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078861-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4j5bk
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phacelia patuliflora (Engelm. & A.Gray) A.Gray"
 ]
}

 The dataset includes 711 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072221-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15744563
title: A large European diversity panel reveals complex azole fungicide resistance gains of a major wheat pathogen

description: Supplementary datasets

Supplementary Tables S1-S14

Supplementary Data S1-S3

 

Abstract: Fungicide resistance in crop pathogens poses severe challenges to sustainable agriculture. Demethylation inhibitors (DMIs) are critical for controlling crop diseases but face rapid resistance gains in the field. Even though the main molecular basis of resistance is well established, field surveys have repeatedly revealed alternative resistance mechanisms. The European continent in particular has seen rapid and heterogeneous gains in azole resistance in the past decades. Here, we establish a large genome panel to dissect the genetic architecture of emerging resistance in the major wheat pathogen Zymoseptoria tritici. The European diversity panel spans 15 sampling years and 27 countries for a total of 1394 analyzed strains. Using two complementary assays to quantify resistance levels of each strain, we captured fine-grained shifts in DMI resistance over space and time. We conducted genome-wide association studies based on a comprehensive set of genotyping approaches for six DMIs. We mapped a total of 21,220 genetic variants and 158 genes linked to resistance. The substantial scope in genetic mechanisms underpinning DMI resistance significantly expands our understanding how continent-wide resistance arises in fungal pathogens. Diversification of the Cyp51 coding sequence was particularly striking with distinct geographic patterns emerging. This study provides expansive new insights into fungicide resistance gains of crop pathogens relevant for future resistance management strategies.
DOI: 10.15468/dl.d24bez
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caragana potaninii Kom."
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030147-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.maturq
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.00453 -2.70532,144.16429 -2.70532,144.16429 56.07808,70.00453 56.07808,70.00453 -2.70532))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gulo gulo (Linnaeus, 1758)"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030146-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jd3f2w
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caragana polourensis Franch."
 ]
}

 The dataset includes 73 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030148-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sfqgv
title: Occurrence Download

description: A dataset containing 252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti (Linnaeus, 1762)",
 "Country is Puerto Rico",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 252 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030149-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77m7sx
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.00453 -2.70532,144.16429 -2.70532,144.16429 56.07808,70.00453 56.07808,70.00453 -2.70532))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alces alces (Linnaeus, 1758)"
 ]
}

 The dataset includes 207 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030150-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybbmtq
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.00453 -2.70532,144.16429 -2.70532,144.16429 56.07808,70.00453 56.07808,70.00453 -2.70532))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Martes zibellina (Linnaeus, 1758)"
 ]
}

 The dataset includes 84 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030151-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qx4bdz
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.00453 -2.70532,144.16429 -2.70532,144.16429 56.07808,70.00453 56.07808,70.00453 -2.70532))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Moschus moschiferus Linnaeus, 1758"
 ]
}

 The dataset includes 35 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030153-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4bcny
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((70.00453 -2.70532,144.16429 -2.70532,144.16429 56.07808,70.00453 56.07808,70.00453 -2.70532))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)"
 ]
}

 The dataset includes 87 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030155-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nynxqq
title: Occurrence Download

description: A dataset containing 24112110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year 2018-2023"
 ]
}

 The dataset includes 24112110 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030143-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.