cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29974717
title: Large-scale dataset for BiMA-DTI

description: This dataset is the TTD dataset that we have processed ourselves, containing all the TTD-related data used in BiMA-DTI.
DOI: 10.6084/m9.figshare.29974717.v1
title: Large-scale dataset for BiMA-DTI

description: This dataset is the TTD dataset that we have processed ourselves, containing all the TTD-related data used in BiMA-DTI.
DOI: 10.15468/dl.7hhb6u
title: Occurrence Download

description: A dataset containing 2846 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carpinus turczaninowii"
 ]
}

 The dataset includes 2846 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038447-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7hw-5c1-5rw
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a8k-61w-gsf
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c3q-p03-mf9
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/eyt-65c-pg0
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wmy-s3w-czw
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/45c-1se-mxa
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e13-2rg-64z
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c3c-pta-pyc
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z98-mqw-mbf
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1ww-q4z-ls0
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v8l-w9x-vg3
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1yv-f5a-374
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ypw-dc2-elt
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/2ze-3x6-vln
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mp6-fb3-nnv
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/16s-mny-s6e
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pe8-zkx-4ml
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d5e-y0e-svf
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0tb-rls-gv9
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3rm-gdf-r6f
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.nw87q2
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "Geometry POLYGON ((-73.173752 45.53377, -73.124313 45.53377, -73.124313 45.569832, -73.173752 45.569832, -73.173752 45.53377))",
 "TaxonKey is Tracheophyta",
 "Year is greater than 2010",
 "GadmGid is CAN.11_1",
 "DatasetKey is one of (Herbier Louis-Marie (QFA) - Collection de plantes vasculaires, Herbier du Québec (QUE) - Collection de plantes vasculaires, Jardin botanique de Montréal (JBM), Marie-Victorin Herbarium (MT) - Plantes vasculaires, National Collection of Vascular Plants (DAO), UQTR-herbarium (Herbier Estelle-Lacoursière))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 41 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039479-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/r7h-55m-qp0
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/r7q-8bl-r29
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5w0-27e-df9
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ra5-qns-81l
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gey-b7e-hye
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zny-5ak-6be
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bm8-sb5-zj7
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vv9-t4q-zea
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/654-nk6-8d4
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d1f-5xl-fbl
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m8x-2mz-lns
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mb5-asg-bxj
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pft-ept-ang
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gxf-8ra-n3w
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t1b-ywy-x62
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kyr-rv7-btw
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qge-fd0-ljd
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/22w-nak-nds
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cty-p7b-e80
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wbt-nts-x1g
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g2p-qw9-a6e
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p1h-n0p-vww
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/902-23x-ee0
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v9q-v64-0mv
title: †Platyostoma Conrad, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6kh-nvs-l5w
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/v0h-n9y-y39
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.pg8s4e
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "Geometry POLYGON ((-73.173752 45.53377, -73.124313 45.53377, -73.124313 45.569832, -73.173752 45.569832, -73.173752 45.53377))",
 "TaxonKey is Tracheophyta",
 "Year is greater than 2010",
 "GadmGid is CAN.11_1",
 "DatasetKey is one of (Herbier Louis-Marie (QFA) - Collection de plantes vasculaires, Herbier du Québec (QUE) - Collection de plantes vasculaires, Jardin botanique de Montréal (JBM), Marie-Victorin Herbarium (MT) - Plantes vasculaires, National Collection of Vascular Plants (DAO), UQTR-herbarium (Herbier Estelle-Lacoursière))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 41 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039480-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pfba6
title: Occurrence Download

description: A dataset containing 108569 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendrobatidae"
 ]
}

 The dataset includes 108569 records from 448 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039423-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4gaue
title: Occurrence Download

description: A dataset containing 19554 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-103 -40,-31 -40,-31 17,-103 17,-103 -40))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Accipiter striatus",
 "Year 1000-2020"
 ]
}

 The dataset includes 19554 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039481-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30621167
title: Critical tipping points in dung beetle communities: environmental, functional traits, and species occurrence data from the Atlantic Forest Biome - datasets

description: All three datasets described below are part of the publication:<br><b><i>“Critical tipping points in dung beetle communities: implications for conservation in the Atlantic Forest Biome.”</i></b>A <b>README.md file</b> is included in the dataset to provide detailed guidance, usage notes, and a <b>data dictionary</b> describing all variables for each file.<b>1. Sites × Environmental Variables Matrix</b>Contains environmental characteristics of the <b>30 Atlantic Forest landscapes</b> where dung beetles were sampled. Each row corresponds to a sampling site, including geographic coordinates and the proportion (%) of major land-use classes.Detailed variable definitions are in README.md.Columns: Longitude, Latitude, Forest (%), Pioneer Vegetation (%), Bare Soil (%), Eucalyptus (%), Urban Areas (%), Bodies of Water (%), Agriculture (%).<b>Purpose:</b> Predictor dataset for Gradient Forest analyses of environmental drivers of dung beetle community turnover.<b>2. Species × Functional Traits Matrix</b>Comprehensive functional trait dataset for all dung beetle species included in the study. Each species is assigned a functional group (FG) and phylogenetic group (PG). Species are ordered by functional group and taxonomic hierarchy.Detailed trait definitions, coding, and units are in README.md.Columns: Body Size, Biomass, Diel, Wing Aspect Ratio, Wing Area, Relocation Behavior, Functional Group, Phylogenetic Group, Codes.<b>Purpose:</b> Supports functional diversity analyses and interpretation of community shifts.<b>3. Sites × Species Records Matrix</b>Presence/absence data for all dung beetle species across 30 sampling sites.Detailed notes on formatting, coding, and species information are in README.md.Rows: sampling sites × Columns: species names (columns, 1 = presence, 0 = absence).<b>Purpose:</b> Response variable for Gradient Forest modeling underpinning the publication’s analyses.<b>Summary:</b><br>All files and the README.md with <b>data dictionary</b> are included in a <b>single Figshare Dataset item</b>. The README.md provides guidance for variable definitions, units, and formatting conventions, ensuring reproducible use of the dataset.<b>Keywords:</b> Dung beetles, Atlantic Forest, community turnover, environmental gradients, functional traits, biodiversity tipping points, conservation, Gradient Forest, land-use change.<b>Citation:</b> Anunciação, P.R.; Tavares, A.L.B.; Vaz-de-Mello, F.Z.; Ribeiro, M.C.; Ernst, R. (2025). Critical tipping points in dung beetle communities: implications for conservation in the Atlantic Forest Biome. Insect Conservation and Diversity, xx.<br>
DOI: 10.6084/m9.figshare.30621167.v1
title: Critical tipping points in dung beetle communities: environmental, functional traits, and species occurrence data from the Atlantic Forest Biome - datasets

description: All three datasets described below are part of the publication:<br><b><i>“Critical tipping points in dung beetle communities: implications for conservation in the Atlantic Forest Biome.”</i></b>A <b>README.md file</b> is included in the dataset to provide detailed guidance, usage notes, and a <b>data dictionary</b> describing all variables for each file.<b>1. Sites × Environmental Variables Matrix</b>Contains environmental characteristics of the <b>30 Atlantic Forest landscapes</b> where dung beetles were sampled. Each row corresponds to a sampling site, including geographic coordinates and the proportion (%) of major land-use classes.Detailed variable definitions are in README.md.Columns: Longitude, Latitude, Forest (%), Pioneer Vegetation (%), Bare Soil (%), Eucalyptus (%), Urban Areas (%), Bodies of Water (%), Agriculture (%).<b>Purpose:</b> Predictor dataset for Gradient Forest analyses of environmental drivers of dung beetle community turnover.<b>2. Species × Functional Traits Matrix</b>Comprehensive functional trait dataset for all dung beetle species included in the study. Each species is assigned a functional group (FG) and phylogenetic group (PG). Species are ordered by functional group and taxonomic hierarchy.Detailed trait definitions, coding, and units are in README.md.Columns: Body Size, Biomass, Diel, Wing Aspect Ratio, Wing Area, Relocation Behavior, Functional Group, Phylogenetic Group, Codes.<b>Purpose:</b> Supports functional diversity analyses and interpretation of community shifts.<b>3. Sites × Species Records Matrix</b>Presence/absence data for all dung beetle species across 30 sampling sites.Detailed notes on formatting, coding, and species information are in README.md.Rows: sampling sites × Columns: species names (columns, 1 = presence, 0 = absence).<b>Purpose:</b> Response variable for Gradient Forest modeling underpinning the publication’s analyses.<b>Summary:</b><br>All files and the README.md with <b>data dictionary</b> are included in a <b>single Figshare Dataset item</b>. The README.md provides guidance for variable definitions, units, and formatting conventions, ensuring reproducible use of the dataset.<b>Keywords:</b> Dung beetles, Atlantic Forest, community turnover, environmental gradients, functional traits, biodiversity tipping points, conservation, Gradient Forest, land-use change.<b>Citation:</b> Anunciação, P.R.; Tavares, A.L.B.; Vaz-de-Mello, F.Z.; Ribeiro, M.C.; Ernst, R. (2025). Critical tipping points in dung beetle communities: implications for conservation in the Atlantic Forest Biome. Insect Conservation and Diversity, xx.<br>
DOI: 10.5281/zenodo.17631032
title: Femur vesseltree (Young mouse)

description: This repository is one part of three zenodo entries belonging to the same project, dealing with the vessel tree of femur bones.

Complete femur bones were extracted, stained, and imaged on light-sheet fluorescence microscope in small tiles as described in the accompanying publication (REF).

The individual tiles were stitched in Fiji using the BigStitcher and build the foundation of all analysis results shown here. Individual tiles can be obtained upon request (too large file size for a single zenodo entry).

Each femur was imaged on four different channels:ch0: Megakaryocytes (Anti-GPIX labeled with Alexa750)ch1: Blood vessels (CD31-high, Anti-CD31 labeled with Alexa647)ch2: Blood vessels (CD31-low, Anti-CD105 labeled with  Alexa546)ch3: (residual) Autofluorescence, captured at 488 nm

Five samples are provided:

1) Young naive mouse: VK-AA501 (10.5281/zenodo.14752863)

2) Aged mouse: VK-AA760 (10.5281/zenodo.14753479)

3) Blood-let mouse: VK-AA764 (10.5281/zenodo.14753578)

4) Young naive female mouse: DS-AA464

5) Aged female mouse: DS-AA470
DOI: 10.5281/zenodo.14752862
title: Femur vesseltree (Young mouse)

description: This repository is one part of three zenodo entries belonging to the same project, dealing with the vessel tree of femur bones.

Complete femur bones were extracted, stained, and imaged on light-sheet fluorescence microscope in small tiles as described in the accompanying publication (REF).

The individual tiles were stitched in Fiji using the BigStitcher and build the foundation of all analysis results shown here. Individual tiles can be obtained upon request (too large file size for a single zenodo entry).

Each femur was imaged on four different channels:ch0: Megakaryocytes (Anti-GPIX labeled with Alexa750)ch1: Blood vessels (CD31-high, Anti-CD31 labeled with Alexa647)ch2: Blood vessels (CD31-low, Anti-CD105 labeled with  Alexa546)ch3: (residual) Autofluorescence, captured at 488 nm

Five samples are provided:

1) Young naive mouse: VK-AA501 (10.5281/zenodo.14752863)

2) Aged mouse: VK-AA760 (10.5281/zenodo.14753479)

3) Blood-let mouse: VK-AA764 (10.5281/zenodo.14753578)

4) Young naive female mouse: DS-AA464

5) Aged female mouse: DS-AA470
DOI: 10.21227/je43-ds10
title: "Surface EMG and Synthetic Signal Dataset for High-Resolution Spectrum and Fractional Frequency Analysis"

description: "High-resolution frequency analysis, including mixed integer and fractional frequency characterization, is essential in biomedical signal processing for extracting clinically meaningful diagnostic information. The validation of such advanced spectral analysis methods requires datasets containing both controlled synthetic signals and real biosignal recordings.This dataset provides 40 synthetically generated discrete-time signals and 10 surface electromyography signals (sEMG) recordings collected during dynamic lower-limb activities, including normal walking and cycling. The synthetic signals were generated across ten frequency bands (1\u201325 Hz, 1\u201350 Hz, 1\u201375 Hz, 1\u2013100 Hz, 1\u2013150 Hz, 1\u2013200 Hz, 1\u2013250 Hz, 1\u2013300 Hz, 1\u2013400 Hz, and 1\u2013500 Hz) using fractional frequency resolution of 0.5 Hz and integer frequency resolution of 1 Hz, synthesized at 2fmax and 4fmax sampling rates. These signals enable detailed benchmarking of spectral analysis techniques that aim to capture mixed integer and fractional frequency components.The real-world dataset includes the gastrocnemius sEMG signals recorded at 2148 Hz during normal walking, cycling, and post-cycling walking segments. The normal walking before cycling, cycling and normal walking after cycling segments are time-annotated to support accurate validation of biomechanical and neuromuscular analysis algorithms.This dataset is intended to support researchers working on high-resolution spectral analysis, graph-based signal processing, neuromuscular modelling, and advanced biomedical signal processing methodologies."
DOI: 10.15468/dl.vjk8ac
title: Occurrence Download

description: A dataset containing 23984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia californica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23984 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039483-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17603341
title: Filtered Mapped NCIT Ontology Terms for AnnotatedBCGEData

description: These are the files that AnnotatedBCGEData pulls when searching datasets, called by the searchForDatasets function. This removed the comments column, added a code column, and read the data into a tsv. 

Newest version changed format, split lines based on values. Includes one line per field and value.
DOI: 10.5281/zenodo.17583904
title: Filtered Mapped NCIT Ontology Terms for AnnotatedBCGEData

description: These are the files that AnnotatedBCGEData pulls when searching datasets, called by the searchForDatasets function. This removed the comments column, added a code column, and read the data into a tsv. 

Newest version changed format, split lines based on values. Includes one line per field and value.
DOI: 10.15468/dl.fnxyjd
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chloridea nubigera",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039484-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2rne6j
title: Occurrence Download

description: A dataset containing 115900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Quercus rubra)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Geometry POLYGON ((-20 20, 45 20, 45 75, -20 75, -20 20))"
 ]
}

 The dataset includes 115900 records from 859 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039468-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7914/pp5m-az79
title: Campanani, northern Chile. AMTC - Temporary seismic deployment

description: Temporary seismic network of 4.5Hz 3C-geophones and SARA electronics recorders.

The network operated between 02.Aug.2022 - 17.Dec.2022 around the town of Putre, in the Chilean Altiplano.