cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12879899.v1
title: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows
DOI: 10.6084/m9.figshare.12879899.v2
title: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows
DOI: 10.6084/m9.figshare.12879899.v3
title: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows
DOI: 10.6084/m9.figshare.19695635
title: Additional file 4 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 4. All FPKM data for uncrushed (day 0) and crushed (days 3, 5, 7 post-crush) samples. This includes whole nerve and purified Schwann cells. Also included is dissociated sciatic nerve to help identify genes that change from the dissociation process, itself.
DOI: 10.6084/m9.figshare.12879899.v4
title: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows
DOI: 10.6084/m9.figshare.19695635.v1
title: Additional file 4 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 4. All FPKM data for uncrushed (day 0) and crushed (days 3, 5, 7 post-crush) samples. This includes whole nerve and purified Schwann cells. Also included is dissociated sciatic nerve to help identify genes that change from the dissociation process, itself.
DOI: 10.6084/m9.figshare.19695638
title: Additional file 5 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 5. All differentially expressed genes and their p-values (and p-adjusted) in Schwann cells at days 3, 5, and 7 post-crush, as compared to day 0 (uncrushed).
DOI: 10.6084/m9.figshare.19695638.v1
title: Additional file 5 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 5. All differentially expressed genes and their p-values (and p-adjusted) in Schwann cells at days 3, 5, and 7 post-crush, as compared to day 0 (uncrushed).
DOI: 10.6084/m9.figshare.19695641
title: Additional file 6 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 6. Table of enriched gene pathways in purified Schwann cells at days 3, 5, and 7. First two sheets show pathways across all timepoints and the subsequent sheets highlight statistics of each pathway separated by timepoints.
DOI: 10.6084/m9.figshare.19695641.v1
title: Additional file 6 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 6. Table of enriched gene pathways in purified Schwann cells at days 3, 5, and 7. First two sheets show pathways across all timepoints and the subsequent sheets highlight statistics of each pathway separated by timepoints.
DOI: 10.6084/m9.figshare.12879899.v6
title: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows
DOI: 10.6084/m9.figshare.19695644
title: Additional file 7 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 7. Table of downregulated gene pathways in purified Schwann cells at days 3, 5, and 7.
DOI: 10.6084/m9.figshare.12879902
title: Additional file 1 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 1:Ovarian follicle transcriptome analyses using the Affymetrix Porcine Genechip. Data of each probe is from the three Large White sows (1, 2, 3) and three Chinese Taihu (1, 2, 3) sows. Raw data from. CEL files were converted to gene signal files and raw signals were normalized above to 500 on each array by MAS 5.0, and the dChip invariant set was used to normalize the signals of the different arrays. "P", present; "A", absent; "M", marginal; "Count (P)", the number of P flag; select while Count (P) ≥2 in two groups (Chen et al., 2009)*. Totally, 16,066 and 15,477 probesets were detected expression in the Large White and Taihu, respectively. *Chen H, Li C, Fang M, Zhu M, Li X, Zhou R, Li K, Zhao S. Understanding Haemophilus parasuis infection in porcine spleen through a transcriptomics approach. BMC Genomics. 2009, 5, 10:64. (XLS 6 MB)
DOI: 10.6084/m9.figshare.25231544.v1
title: Supplementary Material for: Acromegalic Rat Model Presented Cognitive Impairments and Tau Hyperphosphorylation in Hippocampus

description: Introduction: Acromegaly patients, in addition to the most prominent physical and endocrine changes, also exhibit a higher risk of cognitive dysfunction. However, the reasons and mechanisms underlying cognitive impairments in acromegaly patients remain unknown. Methods: Acromegalic rats were induced by subcutaneous injection of tumor cells, with continuous monitoring of body weight and hormonal to confirm the occurrence of acromegaly. Behavioral assessments, including Open Field Test, Novel Object Recognition Test, and Barnes maze Test, were conducted to evaluate the animals' cognitive function. Western blotting, immunohistochemistry, and immunofluorescence techniques were employed to examine changes in hippocampal tau protein, Aβ, and associated signaling pathways. Results: The tumor cells secreting growth hormone increased the secretion of growth hormone, resulting in changes in body size and endocrine functions, thus causing acromegaly. The acromegaly model showed deficiencies in working memory and spatial memory. Hyperphosphorylation of tau protein was observed in the hippocampus of the acromegaly model, but no Aβ deposition was observed. The acromegaly model exhibits hippocampal growth hormone (GH) resistance, decreased expression of GH receptors, and subsequently reduced expression activity of the PI3K-Akt-GSK3β signaling pathway, which is responsible for the hyperphosphorylation of tau protein. Conclusion: The prolonged elevation of GH and insulin-like growth factor 1 (IGF-1) levels caused by acromegaly may lead to abnormalities in the SD rat's PI3K-Akt-GSK3β signaling pathway, subsequently resulting in hyperphosphorylation of hippocampal tau protein and cognitive impairment.
DOI: 10.6084/m9.figshare.25231544
title: Supplementary Material for: Acromegalic Rat Model Presented Cognitive Impairments and Tau Hyperphosphorylation in Hippocampus

description: Introduction: Acromegaly patients, in addition to the most prominent physical and endocrine changes, also exhibit a higher risk of cognitive dysfunction. However, the reasons and mechanisms underlying cognitive impairments in acromegaly patients remain unknown. Methods: Acromegalic rats were induced by subcutaneous injection of tumor cells, with continuous monitoring of body weight and hormonal to confirm the occurrence of acromegaly. Behavioral assessments, including Open Field Test, Novel Object Recognition Test, and Barnes maze Test, were conducted to evaluate the animals' cognitive function. Western blotting, immunohistochemistry, and immunofluorescence techniques were employed to examine changes in hippocampal tau protein, Aβ, and associated signaling pathways. Results: The tumor cells secreting growth hormone increased the secretion of growth hormone, resulting in changes in body size and endocrine functions, thus causing acromegaly. The acromegaly model showed deficiencies in working memory and spatial memory. Hyperphosphorylation of tau protein was observed in the hippocampus of the acromegaly model, but no Aβ deposition was observed. The acromegaly model exhibits hippocampal growth hormone (GH) resistance, decreased expression of GH receptors, and subsequently reduced expression activity of the PI3K-Akt-GSK3β signaling pathway, which is responsible for the hyperphosphorylation of tau protein. Conclusion: The prolonged elevation of GH and insulin-like growth factor 1 (IGF-1) levels caused by acromegaly may lead to abnormalities in the SD rat's PI3K-Akt-GSK3β signaling pathway, subsequently resulting in hyperphosphorylation of hippocampal tau protein and cognitive impairment.
DOI: 10.6084/m9.figshare.12879902.v1
title: Additional file 1 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 1:Ovarian follicle transcriptome analyses using the Affymetrix Porcine Genechip. Data of each probe is from the three Large White sows (1, 2, 3) and three Chinese Taihu (1, 2, 3) sows. Raw data from. CEL files were converted to gene signal files and raw signals were normalized above to 500 on each array by MAS 5.0, and the dChip invariant set was used to normalize the signals of the different arrays. "P", present; "A", absent; "M", marginal; "Count (P)", the number of P flag; select while Count (P) ≥2 in two groups (Chen et al., 2009)*. Totally, 16,066 and 15,477 probesets were detected expression in the Large White and Taihu, respectively. *Chen H, Li C, Fang M, Zhu M, Li X, Zhou R, Li K, Zhao S. Understanding Haemophilus parasuis infection in porcine spleen through a transcriptomics approach. BMC Genomics. 2009, 5, 10:64. (XLS 6 MB)
DOI: 10.6084/m9.figshare.19695644.v1
title: Additional file 7 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 7. Table of downregulated gene pathways in purified Schwann cells at days 3, 5, and 7.
DOI: 10.6084/m9.figshare.12879905
title: Additional file 2 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 2:1476 transcripts that are differentially expressed in porcine ovary between Large White sows and Chinese Taihu sows (p ≤ 0.05). Totally 105 (row 5-109) transcripts have been annotated based on BLASTX searches. "FC", Fold change, gene expression level (normalized signal intensity) of Chinese Taihu sows compared to Large White sows, "&gt;1" represents up regulation, "&lt;1" represents down regulation. "p-value", significance level of differential expression for a particular gene by comparing their log 2 (normalized signal). "Gene name", top informative BLASTX hit. (XLS 806 KB)
DOI: 10.6084/m9.figshare.19695647
title: Additional file 8 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 8. Module assignments (from the WGCNA) for each gene.
DOI: 10.6084/m9.figshare.12879905.v1
title: Additional file 2 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 2:1476 transcripts that are differentially expressed in porcine ovary between Large White sows and Chinese Taihu sows (p ≤ 0.05). Totally 105 (row 5-109) transcripts have been annotated based on BLASTX searches. "FC", Fold change, gene expression level (normalized signal intensity) of Chinese Taihu sows compared to Large White sows, "&gt;1" represents up regulation, "&lt;1" represents down regulation. "p-value", significance level of differential expression for a particular gene by comparing their log 2 (normalized signal). "Gene name", top informative BLASTX hit. (XLS 806 KB)
DOI: 10.6084/m9.figshare.19695647.v1
title: Additional file 8 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 8. Module assignments (from the WGCNA) for each gene.
DOI: 10.6084/m9.figshare.12879908
title: Additional file 3 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 3:Pig unique genes (row 4-15), unique genes with BLSATX identity but no annotation (row 16-98) and unique genes with no BLASTX identity (row 99-136) (p ≤ 0.05, FC ≥ 2 or ≤ 0.5). "FC", Fold change, gene expression level (normalized signal intensity) of Chinese Taihu sows compared to Large White sows, "≥2" represents up regulation, "≤0.5" represents down regulation. "p-value", significance level of differential expression for a particular gene by comparing their log 2 (normalized signal). "Gene name", top informative BLASTX hit. (XLS 272 KB)
DOI: 10.6084/m9.figshare.12879908.v1
title: Additional file 3 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 3:Pig unique genes (row 4-15), unique genes with BLSATX identity but no annotation (row 16-98) and unique genes with no BLASTX identity (row 99-136) (p ≤ 0.05, FC ≥ 2 or ≤ 0.5). "FC", Fold change, gene expression level (normalized signal intensity) of Chinese Taihu sows compared to Large White sows, "≥2" represents up regulation, "≤0.5" represents down regulation. "p-value", significance level of differential expression for a particular gene by comparing their log 2 (normalized signal). "Gene name", top informative BLASTX hit. (XLS 272 KB)
DOI: 10.6084/m9.figshare.19695650
title: Additional file 9 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 9. Analysis of markers of different S100-expressing cell populations.
DOI: 10.6084/m9.figshare.17598503
title: Additional file 2 of Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival

description: Additional file 2: Ko pathways of cluster A.
DOI: 10.6084/m9.figshare.19695650.v1
title: Additional file 9 of An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury

description: Additional file 9. Analysis of markers of different S100-expressing cell populations.
DOI: 10.6084/m9.figshare.17598503.v1
title: Additional file 2 of Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival

description: Additional file 2: Ko pathways of cluster A.
DOI: 10.6084/m9.figshare.25231538
title: clip structure analysis

description: endoscope clip structure analysis raw data
DOI: 10.6084/m9.figshare.25231538.v1
title: clip structure analysis

description: endoscope clip structure analysis raw data
DOI: 10.6084/m9.figshare.12879911
title: Additional file 4 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 4:Genes that distributed in the intervals of the known pig QTLs for reproduction traits. All the genes listed here are from 133 transcripts that are significantly up/down-regulated between Large White and Taihu sows. GenBank IDs represent annotated genes. (XLS 460 KB)
DOI: 10.6084/m9.figshare.12879911.v1
title: Additional file 4 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 4:Genes that distributed in the intervals of the known pig QTLs for reproduction traits. All the genes listed here are from 133 transcripts that are significantly up/down-regulated between Large White and Taihu sows. GenBank IDs represent annotated genes. (XLS 460 KB)
DOI: 10.6084/m9.figshare.12879917
title: Additional file 6 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 6:Primer pairs designed for genes selected for validation by real time RT-PCR and SNP detection. (XLS 28 KB)
DOI: 10.6084/m9.figshare.12879917.v1
title: Additional file 6 of Microarray profiling for differential gene expression in PMSG-hCG stimulated preovulatory ovarian follicles of Chinese Taihu and Large White sows

description: Additional file 6:Primer pairs designed for genes selected for validation by real time RT-PCR and SNP detection. (XLS 28 KB)
DOI: 10.6084/m9.figshare.17598512
title: Additional file 3 of Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival

description: Additional file 3: OTUs from major modules.
DOI: 10.6084/m9.figshare.17598512.v1
title: Additional file 3 of Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival

description: Additional file 3: OTUs from major modules.
DOI: 10.6084/m9.figshare.17598518
title: Additional file 4 of Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival

description: Additional file 4: Relevant OTUs.
DOI: 10.6084/m9.figshare.17598518.v1
title: Additional file 4 of Enterococcus faecium are associated with the modification of gut microbiota and shrimp post-larvae survival

description: Additional file 4: Relevant OTUs.
DOI: 10.6084/m9.figshare.25222976
title: clip design

description: clip design for Tumor localization using radio-frequency identification clip marker
DOI: 10.6084/m9.figshare.25222976.v2
title: clip design

description: clip design for Tumor localization using radio-frequency identification clip marker
DOI: 10.6084/m9.figshare.25222976.v1
title: clip design

description: clip design for Tumor localization using radio-frequency identification clip marker
DOI: 10.6084/m9.figshare.21268549
title: Experimental study on the seismic behavior of RC columns improved with central large-diameter butted steel rods

description: Abstract A reinforced concrete (RC) column improved with central large-diameter butted steel rods (CLBSR column) has been proposed to increase the limit value of the axial compression ratio. This paper presents the seismic behavior analysis of CLBSR columns subjected to low-cycle reciprocating loading. The CLBSR columns were also compared with the RC column improved with central large-diameter steel rods (CLSR column) and the RC column improved with central reinforcement bars (CRB column) under the same experimental conditions. The typical failure modes, hysteretic curves, skeleton curves, stiffness degradation, and energy dissipation capacity were all investigated. The improved PARK damage model obtained the corresponding relationships between the damage indices and the damage state of each column. The test results indicated that the CLBSR columns and CLSR columns had similar seismic behavior, but were slightly inferior to the CRB columns. Overall, the butt joint of large-diameter steel rods had little effect on the seismic behavior.
DOI: 10.17632/z7pbcvw5hd.1
title: Design Floater98 with Fix-MRP in Towing Tank

description: Dataset of design catamaran floater 9.8 meters with Fix-Moment Reference Point in Towing Tank
DOI: 10.17632/gyygtntm48.1
title: Figures 2-5 for the paper "Analytical solution of l-i SEIR model – Comparison of l-i SEIR model with conventional SEIR model in simulation of epidemic curves"

description: The author has calculated and plotted all epidemic curves in Excel for the paper "Analytical solution of l-i SEIR model – Comparison of l-i SEIR model with conventional SEIR model in simulation of epidemic curves". All these calculated curves are shown in Figures 2-5, which are separately placed in 4 sheets in the Excel file.
DOI: 10.17632/jtp6dcyp78.2
title: GHG Mitigation beyond the NDC in Chile: An assessment of alternatives - Pyplan Models

description: Models of Chilean GHG emissions of the transportation, industry and mining, buildings, IPPU, forestry, agriculture and waste sectors, used to explore mitigation opportunities beyond Chile's NDC . Data includes projection of emisions and mitigation actions.  We considered a baseline scenario where the Chilean NDC commitments are met. The mitigation actions considered in this scenario are what the team considered to be more plausible of occurring given the current policies in Chile, regardless of their cost.
The modelling was carried out based on the combination of scenarios and futures, where these two concepts are defined as follows:
● 	Futures: They represent a trajectory of exogenous parameters that represent a possible set of conditions that could facilitate (or difficult) the mitigation strategies.
●	Mitigation Scenarios: They represent different mitigation strategies implemented at a national level. Each scenario considers a set of mitigation actions and their specific level of implementation. 
 We analyse two mitigation scenarios:
●	NDC Mitigation Scenario (NDC): Considers the achievement of all the mitigation commitments for 2030 done by Chile in its last NDC.
●	Beyond NDC Mitigation (NDC+): Considers enhanced mitigation actions to overachieve Chile's NDC commitments for 2030.
DOI: 10.17632/jtp6dcyp78.3
title: GHG Mitigation beyond the NDC in Chile: An assessment of alternatives - Pyplan Models

description: Models of Chilean GHG emissions of the transportation, industry and mining, buildings, IPPU, forestry, agriculture and waste sectors, used to explore mitigation opportunities beyond Chile's NDC . Data includes projection of emisions and mitigation actions.  We considered a baseline scenario where the Chilean NDC commitments are met. The mitigation actions considered in this scenario are what the team considered to be more plausible of occurring given the current policies in Chile, regardless of their cost.
The modelling was carried out based on the combination of scenarios and futures, where these two concepts are defined as follows:
● 	Futures: They represent a trajectory of exogenous parameters that represent a possible set of conditions that could facilitate (or difficult) the mitigation strategies.
●	Mitigation Scenarios: They represent different mitigation strategies implemented at a national level. Each scenario considers a set of mitigation actions and their specific level of implementation. 
 We analyse two mitigation scenarios:
●	NDC Mitigation Scenario (NDC): Considers the achievement of all the mitigation commitments for 2030 done by Chile in its last NDC.
●	Beyond NDC Mitigation (NDC+): Considers enhanced mitigation actions to overachieve Chile's NDC commitments for 2030.