cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ksn02v73x
title: Dataset: Host genetic drift and adaptation in the evolution and maintenance of parasite resistance

description: The experiment investigates the survival of Caenorhabditis elegans host
 populations when exposed to a bacterial parasite, Serratia marcescens.
 Exposed host populations were either large (500 individuals) or small (25
 or 50 individuals) and were either susceptible or resistant to the
 disease. Populations of C. elegans were evolved against either heat-killed
 or live bacteria. After 13 generations of host evolution, we exposed the
 worms again to the bacteria to determine whether the worms lost, gained,
 or maintained resistance to the parasite. In this dataset, we counted the
 number of worms still living after 48 hours post-infection. A proportion
 of dead hosts was calculated based on the number of worms still alive
 after 48 hours divided by the number initially infected.
description: The dataset was collected in the laboratory of Levi Morran at
 Emory University. Live worms from each Petri dish replicate were counted
 on dissecting microscopes. The data was processed by JMP Pro 13.0 (SAS) to
 perform a series of generalized linear models for statistical analysis.
 The resulting manuscript was accepted for publication in the Journal of
 Evolutionary Biology.
description: The Readme file contains information on each of the variables in
 the datasets. The EF3 tab refers to the initially resistant worm
 populations, whereas the CF3 tab refers to the susceptible worm
 populations. More information on these populations can be found in White
 et al. 2021 Journal of Evolutionary Biology and Morran et al. 2011
 Science.
DOI: 10.48689/1d9c9de6-97ff-4642-bac4-8dc76912a18e
title: Areal extents of Postelsia palmaeformis algae presence in BC, 2008

description: Observations of an algal species (Postelsia palmaeformis) with a limited distribution in BC
DOI: 10.48689/af6f50e9-62d3-4824-be87-c96100817d45
title: Areal extents of Lithothrix aspergillum (red algae) presence in BC

description: Observations of an algal species Lithothrix aspergillum (red algae) considered rare in BC, 2008.
DOI: 10.5061/dryad.bk3j9kdbp
title: Data from: Ontogenetic trajectories of septal spacing and shell shape in the Late Cretaceous gaudryceratid ammonoids: implications for their post-embryonic palaeoecology

description: In this study, we analysed the ontogenetic trajectories of septal spacing
 between succeeding chambers of the gaudryceratid ammonoid, Gaudryceras
 tenuiliratum, which were excavated in the Tomamae and Mikasa areas of
 Hokkaido, Japan. The ontogenetic trajectories of septal spacing in G.
 tenuiliratum demonstrate a general trend: two cycles of increasing to
 decreasing septal spacing until the ~30th septum, gradually decreasing
 septal spacing until the ~70th septum, and then gradually increasing
 septal spacing at least until the ~110th septum. The ontogenetic
 trajectories of the whorl expansion rate (WER) in our specimens also
 demonstrated that a decreasing trend changed into an increasing trend at a
 shell diameter of ~5–7 mm. This shell diameter corresponds to the end of
 the second cycle of increasing to decreasing septal spacing occurring
 before the ~30th septum, at which point G. tenuiliratum possibly
 transitioned from planktic to nektobenthic habits. No significant
 differences were detected in the ontogenetic trajectories of septal
 spacing and conch shape between the two areas, which suggests that the
 ontogenetic trajectory patterns of septal spacing in the Late Cretaceous
 ammonoids were taxonomy-dependent rather than environment-dependent.
DOI: 10.15468/dl.e5ur5m
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is one of (Amnirana nicobariensis, Hylarana nicobariensis, Indosylvirana nicobariensis, Bijurana nicobariensis)"
 ]
}

 The dataset includes 56 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002844-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48689/734bad15-11c3-45ef-91c1-408d36e52f1e
title: Aquatic Invasive Species of British Columbia

description: Site locations of aquatic invasive species occurrences throughout the province. The aquatic invasive species include species of amphibians, fishes, invertebrates, plants, alga and turtles.
DOI: 10.5061/dryad.h70rxwdj4
title: Local adaptation in thermal tolerance for a tropical butterfly across ecotone and rainforest habitats

description: Thermal adaptation to habitat variability can determine species
 vulnerability to environmental change. For example, physiological
 tolerance to naturally low thermal variation in tropical forests species
 may alter their vulnerability to climate change impacts, compared with
 open habitat species. However, the extent to which habitat-specific
 differences in tolerance derive from within-generation versus
 across-generation ecological or evolutionary processes are not well
 characterized. Here we studied thermal tolerance limits of a Central
 African butterfly (Bicyclus dorothea) across two habitats in Cameroon: a
 thermally stable tropical forest and the more variable ecotone between
 rainforest and savanna. Second generation individuals originating from the
 ecotone, reared under conditions common to both populations, exhibited
 higher upper thermal limits (CTmax) than individuals originating from
 forest (∼3°C greater). Lower thermal limits (CTmin) were also slightly
 lower for the ecotone populations (∼1°C). Our results are suggestive of
 local adaptation driving habitat-specific differences in thermal tolerance
 (especially CTmax) that hold across generations. Such habitat-specific
 thermal limits may be widespread for tropical ectotherms and could affect
 species vulnerability to environmental change. However, microclimate and
 within-generation developmental processes (e.g. plasticity) will mediate
 these differences, and determining the fitness consequences of thermal
 variation for ecotone and rainforest species will require continued study
 of both within-generation and across-generation eco-evolutionary
 processes.
DOI: 10.48689/af763591-dad2-4a3f-873f-b03c1a710246
title: American Mink Density

description: Spatial distribution and seasonal abundance of American Mink (Neovison vison) in Howe Sound June 2014-May 2015 and September 2015 from a boat-based survey conducted along a transect.
DOI: 10.48689/d6cad47f-b519-4a2c-80f6-01d470ed4694
title: Alouette Watershed Sockeye – Fish Passage Feasibility

description: To assess the fish passage feasibility into the Alouette Watershed to promote the re-establishment of anadromous Alouette Sockeye and assess passage around the Alouette Dam.
DOI: 10.6084/m9.figshare.29126426
title: Tissue specific genes for each location of muscle tissue

description: Specific expression genes of muscles in different sampling locations of sepsis model pigs.
DOI: 10.6084/m9.figshare.26780326
title: <b>Data_used_in_mosquito_study</b>

description: <b>All </b><b>datasets</b><b> used for the, annotations, </b><b>differential</b><b> expression analysis, </b><b>enrichment</b><b> analysis, and DNA binding and lncRNAs identification.</b><br><b>The DE directory contains:</b>count matrices computed using featureCounts of the Subread R package and used for the differential expression analysis for the , <i>WT</i> vs. <i>epox</i><i> </i><sup><em>-/- </em></sup>mutant (featureCounts_counts_matrix_WTvsepox.txt) and WT across timepoints comparisons (featureCounts_counts_matrix_WTacrosstimepoints.txt)complete tables with the DE results for the <i>WT</i> and <i>epox</i><i> </i><sup><em>-/-</em></sup> mutant (DE_lgFC2_FDR0.01_WTvsepox.xlsx), <i>WT</i> across timepoints (DE_lgFC2_FDR0.01_WTacrosstimepoints.xlsx) comparisonsEggNog annotations used for the enrichment analysis (MM_5wcdadnx.emapper.annotations.csv)full table with the outputs of the enrichment analysis for the clusters recovered by the k-means algorithm (KmeansEnrichmentGOterms.xlsx)<b>The DNAbinding_lncRNAs </b><b>directory </b><b>contains:</b>output of the search for the DNA binding proteins with the Zinc-finger domains using ZnF-Prot (ZnF-Prot.txt)output of the CPC2 analysis (result_cpc2_fruitfly.txt)output of the LncDC analysis (lncdc_AA_selftrained_withSSF.csv)output of the search for the motifs in the differentially expressed lncRNAs using MEME-suite (MEME-DEGs_out.txt)the list of lncRNAs that could serve as regulators of genes that mediate juvenile hormone action (lncRNAs_genes_of_intrests.xlsx)The summary of the search for DNA binding proteins, transcription factors and zinc finger domains (DBPs_TFs_DEGs_ZnFs.xlsx)<b>The HPLC_MS_MS_Figure6 </b><b>directory </b><b>contains:</b>Individual data values of ecdysteroids titers used for Figure 6 (Ecdysteroids_titers_sum.xlsx)<b>The delay_genes_Additional_file_8 directory contains:</b>Individual data values of delay genes used for Additional file 8 (delay_genes_data_used_for_Additional_figure_8.xlsx)<b>The VMPs_Figure5_Additional_file_6 </b><b>directory contains:</b>Individual data values of VMPs used for Figure 5 and Additional file 6 (VMPs_data_used_for_Figure5_and_Additional_file6.xlsx)<br>
DOI: 10.6084/m9.figshare.26780326.v1
title: <b>Data_used_in_mosquito_study</b>

description: <b>All </b><b>datasets</b><b> used for the, annotations, </b><b>differential</b><b> expression analysis, </b><b>enrichment</b><b> analysis, and DNA binding and lncRNAs identification.</b><br><b>The DE directory contains:</b>count matrices computed using featureCounts of the Subread R package and used for the differential expression analysis for the , <i>WT</i> vs. <i>epox</i><i> </i><sup><em>-/- </em></sup>mutant (featureCounts_counts_matrix_WTvsepox.txt) and WT across timepoints comparisons (featureCounts_counts_matrix_WTacrosstimepoints.txt)complete tables with the DE results for the <i>WT</i> and <i>epox</i><i> </i><sup><em>-/-</em></sup> mutant (DE_lgFC2_FDR0.01_WTvsepox.xlsx), <i>WT</i> across timepoints (DE_lgFC2_FDR0.01_WTacrosstimepoints.xlsx) comparisonsEggNog annotations used for the enrichment analysis (MM_5wcdadnx.emapper.annotations.csv)full table with the outputs of the enrichment analysis for the clusters recovered by the k-means algorithm (KmeansEnrichmentGOterms.xlsx)<b>The DNAbinding_lncRNAs </b><b>directory </b><b>contains:</b>output of the search for the DNA binding proteins with the Zinc-finger domains using ZnF-Prot (ZnF-Prot.txt)output of the CPC2 analysis (result_cpc2_fruitfly.txt)output of the LncDC analysis (lncdc_AA_selftrained_withSSF.csv)output of the search for the motifs in the differentially expressed lncRNAs using MEME-suite (MEME-DEGs_out.txt)the list of lncRNAs that could serve as regulators of genes that mediate juvenile hormone action (lncRNAs_genes_of_intrests.xlsx)The summary of the search for DNA binding proteins, transcription factors and zinc finger domains (DBPs_TFs_DEGs_ZnFs.xlsx)<b>The HPLC_MS_MS </b><b>directory </b><b>contains:</b>Ecdysteroids titers used for plotting (Ecdysteroids_titers_sum.xlsx)<br>
DOI: 10.48472/datapb/ys8qto
title: Biodiversidade de moscas da Paraíba, Brasil

description: Este dataset foi criado a partir das informações dos exemplares de Diptera necrófagos depositados na Coleção Entomológica da Universidade Federal da Paraíba (DSEC), João Pessoa, Paraíba, Brasil. A coleção de Diptera da DSEC teve início com o Prof. Dr. Vitor Py-Daniel, em 1976, com a família Simuliidae. Posteriormente o Prof. Dr. Dalton de Souza Amaorim esteve à frente da coleção de Diptera (1985-1990), expandido os grupos depositados e a coleção. Para esta primeira versão do repositório DATAPB foi realizada uma seleção de registros de moscas necrófagas da Paraíba, que conta atualmente com 5.535 exemplares pertencentes a 31 espécies. A coleção de Diptera reúne atualmente cerca de 10 mil exemplares, com representantes focados no Nordeste Brasileiro, mas também com alguns exemplares de outros estados e inclusive outros países. Estes dados em sua primeira versão fornecem informações básicas sobre a ocorrência e distribuição geográfica de diferentes espécies de moscas necrófagas para o estado da Paraíba.
DOI: 10.15468/dl.v7h43j
title: Occurrence Download

description: A dataset containing 5478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is one of (Benin, Nigeria)",
 "TaxonKey is Afzelia africana Sm. ex Pers."
 ]
}

 The dataset includes 5478 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007311-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ttfa5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Barbodes bunau)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024841-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyf7a3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corydoras paleatus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033871-251025141854904/datasets/export for details.
DOI: 10.17632/4dnvv92trn
title: Spider4SSC - A semantically equivalent text-to-SQL/SPARQL/Cypher dataset

description: Spider4SSC is a composite and extension of Spider (Yu et al., 2018), Spider4SPARQL (Kosten et. al., 2023) and our own Spider4Cypher data. Spider4SSC is a multi-domain text-to-query language dataset with 4525 unique (question, sql, sparql, cypher) samples where semantically matching queries are provided in SQL, SPARQL and Cypher. The dataset contains 159 distinct domain relational databases from Spider \cite{yu-etal-2018-spider} and 159 equivalent graph databases. This allows cross-query-language benchmarking and fine-tunning of neural networks on text-to-query task.
DOI: 10.17632/4dnvv92trn.2
title: Spider4SSC - A semantically equivalent text-to-SQL/SPARQL/Cypher dataset

description: Spider4SSC is a composite and extension of Spider (Yu et al., 2018), Spider4SPARQL (Kosten et. al., 2023) and our own Spider4Cypher data. Spider4SSC is a multi-domain text-to-query language dataset with 4525 unique (question, sql, sparql, cypher) samples where semantically matching queries are provided in SQL, SPARQL and Cypher. The dataset contains 159 distinct domain relational databases from Spider \cite{yu-etal-2018-spider} and 159 equivalent graph databases. This allows cross-query-language benchmarking and fine-tunning of neural networks on text-to-query task.
DOI: 10.17632/3pdn4c3gph
title: ItemSight: A Shiny Application for Item Analysis

description: This document contains R codes for a Shiny application - ItemSight. It is an R-based Shiny application designed to streamline item analysis through an intuitive interface. Educators can upload student responses along with the answer key, and the tool quickly produces detailed item-level and overall test statistics. Developed using R and Shiny, it is compatible with both Windows and macOS systems.
DOI: 10.17632/3pdn4c3gph.1
title: ItemSight: A Shiny Application for Item Analysis

description: This document contains R codes for a Shiny application - ItemSight. It is an R-based Shiny application designed to streamline item analysis through an intuitive interface. Educators can upload student responses along with the answer key, and the tool quickly produces detailed item-level and overall test statistics. Developed using R and Shiny, it is compatible with both Windows and macOS systems.
DOI: 10.15468/dl.6c85xz
title: Occurrence Download

description: A dataset containing 23203 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Myotis lucifugus"
 ]
}

 The dataset includes 23203 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033872-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/s8298dcfvd
title: MOR activity of a B-doped Pd-based electrocatalyst with abundant heterojunctions

description: This Mendeley Data correspons the following paper: Wu, Zifan; Yan, Shaohui; Fang, Jiye; Yan, Dezhi; Xing, Yalan; Ye, Cuiping; Zhang, Qianfan; Zhang, Shichao (2025), “MOR activity of a B-doped Pd-based electrocatalyst with abundant heterojunctions”. All the data and result can be reproduced through these data.
DOI: 10.17632/s8298dcfvd.1
title: MOR activity of a B-doped Pd-based electrocatalyst with abundant heterojunctions

description: This Mendeley Data correspons the following paper: Wu, Zifan; Yan, Shaohui; Fang, Jiye; Yan, Dezhi; Xing, Yalan; Ye, Cuiping; Zhang, Qianfan; Zhang, Shichao (2025), “MOR activity of a B-doped Pd-based electrocatalyst with abundant heterojunctions”. All the data and result can be reproduced through these data.
DOI: 10.17632/jyv7vk9pzc
title: Environmental Regulation and Compensation Gap Within Enterprises：Evidence from China

description: This dataset is primarily intended to replicate the research findings reported in our manuscript [Environmental Regulation and Compensation Gap Within Enterprises：Evidence from China ].
DOI: 10.17632/jyv7vk9pzc.1
title: Environmental Regulation and Compensation Gap Within Enterprises：Evidence from China

description: This dataset is primarily intended to replicate the research findings reported in our manuscript [Environmental Regulation and Compensation Gap Within Enterprises：Evidence from China ].
DOI: 10.17632/fdh234cpwd
title: Convolvulus pluricaulis confers antidepressant and antioxidant effects through conserved metabolic and molecular pathways in Drosophila Mitra et al.

description: 1. Figure 2A: Raw Data (Metabolomics)(Head Tissue)
2. Figure 2A: Metaboanalyst Input (Head Tissue)
3. Figure 2A: Normalized_Scaled_ C.p_Ctrl (Head Tissue)
4. Figure 2B: (PCA)(Head Tissue)
5. Figure 2C: (Volcano plot)(Head Tissue)
6. Figure S2A: (Raw Data) (Body w/o Head tissue)
7. Figure S2A: (MetaboAnalyst input) (Body w/o Head tissue)
8. Figure S2A: Normalized_Scaled_ C.p_Ctrl (Body w/o Head tissue)
9. Figure S2E: (PCA)(Body w/o Head tissue)
DOI: 10.5281/zenodo.13788268
title: ERL-118550 Data: Rebates and Grid Decarbonization from the Inflation Reduction Act Promote Equitable Adoption of Energy Efficiency Retrofits

description: The authors have self-reported an issue in how they used RSMeans 2019 City Cost Index (CCI) data to adjust for regional cost differences. The publicly available webpage stated these data could be used to “adjust for cost differences when compared to the national average, show cost differences between cities, compare cost differences between quarters of the same year, or adjust costs to Canadian cities.” However, the RSMeans Data and Engineering Department later clarified that these values “were intended to show how much CCI values changed for each city at the start of 2019 compared to the values in our 2019 book.” Nevertheless, our capital cost estimates closely align with several peer-reviewed studies and publicly available data sources. Based on our review, we do not believe our method significantly affected the study’s overall findings or conclusions. Further discussion is provided in the manuscript’s Limitations section and Appendix S5 of the Supplementary Materials.

Peer-reviewed article available here: https://iopscience.iop.org/article/10.1088/1748-9326/adb765

Article DOI: 10.1088/1748-9326/adb765
DOI: 10.5281/zenodo.11459690
title: ERL-118550 Data: Rebates and Grid Decarbonization from the Inflation Reduction Act Promote Equitable Adoption of Energy Efficiency Retrofits

description: The authors have self-reported an issue in how they used RSMeans 2019 City Cost Index (CCI) data to adjust for regional cost differences. The publicly available webpage stated these data could be used to “adjust for cost differences when compared to the national average, show cost differences between cities, compare cost differences between quarters of the same year, or adjust costs to Canadian cities.” However, the RSMeans Data and Engineering Department later clarified that these values “were intended to show how much CCI values changed for each city at the start of 2019 compared to the values in our 2019 book.” Nevertheless, our capital cost estimates closely align with several peer-reviewed studies and publicly available data sources. Based on our review, we do not believe our method significantly affected the study’s overall findings or conclusions. Further discussion is provided in the manuscript’s Limitations section and Appendix S5 of the Supplementary Materials.

Peer-reviewed article available here: https://iopscience.iop.org/article/10.1088/1748-9326/adb765

Article DOI: 10.1088/1748-9326/adb765
DOI: 10.17632/fdh234cpwd.2
title: Convolvulus pluricaulis confers antidepressant and antioxidant effects through conserved metabolic and molecular pathways in Drosophila Mitra et al.

description: 1. Figure 2A: Raw Data (Metabolomics)(Head Tissue)
2. Figure 2A: Metaboanalyst Input (Head Tissue)
3. Figure 2A: Normalized_Scaled_ C.p_Ctrl (Head Tissue)
4. Figure 2B: (PCA)(Head Tissue)
5. Figure 2C: (Volcano plot)(Head Tissue)
6. Figure S2A: (Raw Data) (Body w/o Head tissue)
7. Figure S2A: (MetaboAnalyst input) (Body w/o Head tissue)
8. Figure S2A: Normalized_Scaled_ C.p_Ctrl (Body w/o Head tissue)
9. Figure S2E: (PCA)(Body w/o Head tissue)
DOI: 10.17632/3jwkwmjj9v
title: Quantitative Research Data

description: The study hypothesized that quantitative MRI parameters, specifically Ktrans and ADC can non-invasively differentiate osteosarcoma histologic subtypes by reflecting underlying differences in vascular permeability and tumor cellularity. Multiparametric MRI data were collected from 43 patients using 3T DWI and DCE-MRI protocols.

The data demonstrated that K^trans and ADC significantly varied across subtypes, with chondroblastic osteosarcoma showing higher Ktrans compared to osteoblastic forms, suggesting greater microvascular permeability within the chondroid stroma. These findings indicate that perfusion and diffusion metrics can serve as imaging biomarkers of osteosarcoma heterogeneity.

Clinically, the results highlight the role of radiology as a quantitative diagnostic tool in precision oncology, enhancing subtype differentiation, guiding treatment monitoring, and potentially reducing dependence on invasive biopsy. The dataset enables replication of this workflow for validation or radiomics-based prognostic modeling in future studies.