cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7684898
title: Characterization of signal and transit peptides based on motif composition and taxon-specific patterns

description: These files contain data, sequences and supplementary information for the article entitled '<em>Characterization of signal and transit peptides based on motif composition and taxon-specific patterns</em>'. <strong>Contents</strong> <strong>Raw_data.zip</strong> - contains raw data and sequences downloaded from UniProt and other databases. These files were used to create datasets used for described analyses. <strong>Datasets.zip</strong> - presequence and peptide datasets obtained from raw data and used for all subsequent analyses. <strong>Motif_analysis_reports_presequences_AMP.zip</strong> - HTML reports with detailed analyses of motif composition of presequences and AMPs <strong>Motif_analysis_reports_presequences_encoded.zip</strong> - HTML reports with detailed analyses of motif composition of presequences using reduced alphabets <strong>Motif_analysis_reports_presequences_taxonomy.zip</strong> - HTML reports with detailed analyses of motif composition of presequences for different taxons <strong>Motif_analysis_reports_SP_taxonomy.zip</strong> - HTML reports with detailed analyses of motif composition of signal peptides on different taxonomic levels <strong>Motif_analysis_reports_presequences_counts.zip </strong> - HTML reports with detailed analyses of motifs occuring more than once in presequences and AMPs <strong>Abstract</strong> Targeting peptides or presequences are N-terminal extensions of proteins that encode information about their cellular localization. They include signal peptides (SP), which target proteins to the endoplasmic reticulum (ER), and transit peptides (TP) directing proteins to the organelles of endosymbiotic origin: chloroplasts and mitochondria. TPs were hypothesized to have evolved from antimicrobial peptides (AMPs), which are responsible for the host defence against microorganisms, including bacteria, fungi and viruses. In this study, we performed a comprehensive bioinformatic analyses of amino acid motifs of targeting peptides and AMPs using a curated set of experimentally verified proteins. We identified motifs frequently occurring in each type of presequence showing specific patterns associated with their amino acid composition, and investigated their position within the presequence. We also compared motif patterns among different taxonomic groups and identified taxon-specific features, providing some evolutionary insights. Considering the functional relevance and many practical applications of targeting peptides and AMPs, we believe that our analyses will prove useful for their design, and better understanding of protein import mechanism and presequence evolution.
DOI: 10.5281/zenodo.8281293
title: Characterization of signal and transit peptides based on motif composition and taxon-specific patterns

description: These files contain data, sequences and supplementary information for the article entitled '<em>Characterization of signal and transit peptides based on motif composition and taxon-specific patterns</em>'. <strong>Contents</strong> <strong>Raw_data.zip</strong> - contains raw data and sequences downloaded from UniProt and other databases. These files were used to create datasets used for described analyses. <strong>Datasets.zip</strong> - presequence and peptide datasets obtained from raw data and used for all subsequent analyses. <strong>Motif_analysis_reports_presequences_AMP.zip</strong> - HTML reports with detailed analyses of motif composition of presequences and AMPs <strong>Motif_analysis_reports_presequences_encoded.zip</strong> - HTML reports with detailed analyses of motif composition of presequences using reduced alphabets <strong>Motif_analysis_reports_presequences_taxonomy.zip</strong> - HTML reports with detailed analyses of motif composition of presequences for different taxons <strong>Motif_analysis_reports_SP_taxonomy.zip</strong> - HTML reports with detailed analyses of motif composition of signal peptides on different taxonomic levels <strong>Motif_analysis_reports_presequences_counts.zip </strong> - HTML reports with detailed analyses of motifs occuring more than once in presequences and AMPs <strong>Abstract</strong> Targeting peptides or presequences are N-terminal extensions of proteins that encode information about their cellular localization. They include signal peptides (SP), which target proteins to the endoplasmic reticulum (ER), and transit peptides (TP) directing proteins to the organelles of endosymbiotic origin: chloroplasts and mitochondria. TPs were hypothesized to have evolved from antimicrobial peptides (AMPs), which are responsible for the host defence against microorganisms, including bacteria, fungi and viruses. In this study, we performed a comprehensive bioinformatic analyses of amino acid motifs of targeting peptides and AMPs using a curated set of experimentally verified proteins. We identified motifs frequently occurring in each type of presequence showing specific patterns associated with their amino acid composition, and investigated their position within the presequence. We also compared motif patterns among different taxonomic groups and identified taxon-specific features, providing some evolutionary insights. Considering the functional relevance and many practical applications of targeting peptides and AMPs, we believe that our analyses will prove useful for their design, and better understanding of protein import mechanism and presequence evolution.
DOI: 10.17632/23m3mz3nkc.1
title: A comprehensive dataset for bibliometric analysis of trends in sustainable urban streets

description: Contains the list of publications and all details on the subject of trends in sustainable urban streets.
DOI: 10.17632/znstwrpwkx.1
title: LINF_360006650

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pp22kv8rn9.1
title: EOBMGO algorithm MATLAB Code

description: Here, the MATLAB code of the EOBMGO algorithm has been shared.
DOI: 10.17632/jgvdz8jp3m.1
title: Online Information on Quercetin - First 100 Websites on Google Search

description: On July 10th, 2023, a Google search was initiated using the keyword "Quercetin". The examination focused on the first 100 search results. To ensure methodological consistency, sponsored links were excluded unless they were part of the initial 100 results.  
JAMA benchmark scores, HON Code certificate presence, Flesch Reading Ease Score, Flesch-Kincaid Grade Level, Fog Scale (Gunning Fog Index), and SMOG Index (Simple Measure of Gobbledygook) scores were noted for each web site.
DOI: 10.57841/casdc.0001957
title: 石墨烯的功能化改性及其作为水基润滑添加剂的应用进展
DOI: 10.6084/m9.figshare.24032037.v1
title: Data used for figure and table

description: This Data used for figure and table in the study.
DOI: 10.18419/darus-1815
title: Replication data of Lotsch group for: "Sustained Solar H2 Evolution from a Thiazolo[5,4-d]thiazole-Bridged Covalent Organic Framework and Nickel-Thiolate Cluster in Water"

description: All primary data files of measurements and processed data of the journal article mentioned under related publications from Lotsch group can be found here. This dataset contains all data from analytical measurements including BET plots, elemental analysis, CO2 adsorption, crystal structure of DTz, cyclic voltammetry, mass spectra, FT-IR, NMR, PL spectra, PXRD, SEM, TEM, solid state NMR, TGA, UV-vis absorption, water adsorption, XPS data and photocatalysis of the journal article mentioned under the related publication.
DOI: 10.5517/ccdc.csd.cc222kd4
title: CCDC 1909085: Experimental Crystal Structure Determination

description: Related Article: Ya-Li Sang, Xin-Hao Zhang, Xue-Song Lin, Yan-Hua Liu, Xiao-Yin Liu|2019|J.Coord.Chem.|72|3144|doi:10.1080/00958972.2019.1674292
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc222kf5
title: CCDC 1909086: Experimental Crystal Structure Determination

description: Related Article: Ya-Li Sang, Xin-Hao Zhang, Xue-Song Lin, Yan-Hua Liu, Xiao-Yin Liu|2019|J.Coord.Chem.|72|3144|doi:10.1080/00958972.2019.1674292
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc222kg6
title: CCDC 1909087: Experimental Crystal Structure Determination

description: Related Article: Ya-Li Sang, Xin-Hao Zhang, Xue-Song Lin, Yan-Hua Liu, Xiao-Yin Liu|2019|J.Coord.Chem.|72|3144|doi:10.1080/00958972.2019.1674292
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc229rw1
title: CCDC 1916013: Experimental Crystal Structure Determination

description: Related Article: Qi-An Peng, Xiang-Peng Tan, Yi-Di Wang, Si-Huan Wang, You-Xin Jiang, Yongming Cui|2020|Acta Chim.Slov.|67|644|doi:10.17344/acsi.2019.5650
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24rjjz
title: CCDC 1988821: Experimental Crystal Structure Determination

description: Related Article: Anthony Wong, Jiaxiang Chu, Guang Wu, Joshua Telser, Roman Dobrovetsky, Gabriel Ménard|2020|Inorg.Chem.|59|10343|doi:10.1021/acs.inorgchem.0c01464
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24rjk0
title: CCDC 1988822: Experimental Crystal Structure Determination

description: Related Article: Anthony Wong, Jiaxiang Chu, Guang Wu, Joshua Telser, Roman Dobrovetsky, Gabriel Ménard|2020|Inorg.Chem.|59|10343|doi:10.1021/acs.inorgchem.0c01464
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24rjq5
title: CCDC 1988827: Experimental Crystal Structure Determination

description: Related Article: Anthony Wong, Jiaxiang Chu, Guang Wu, Joshua Telser, Roman Dobrovetsky, Gabriel Ménard|2020|Inorg.Chem.|59|10343|doi:10.1021/acs.inorgchem.0c01464
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc291ty4
title: CCDC 2116926: Experimental Crystal Structure Determination

description: Related Article: Anders Reinholdt, Seongyeon Kwon, Mehrafshan G. Jafari, Michael R. Gau, Patrick J. Caroll, Chad Lawrence, Jun Gu, Mu-Hyun Baik, Daniel J. Mindiola|2021|J.Am.Chem.Soc.|144|527|doi:10.1021/jacs.1c11215
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.8281290
title: Supplementary Material for "How Students Plagiarize Modeling Assignments"

description: Supplementary Material for the Paper "How Students Plagiarize Modeling Assignments" at the Educators Symposium at MODELS'23.
DOI: 10.5281/zenodo.8281291
title: Supplementary Material for "How Students Plagiarize Modeling Assignments"

description: Supplementary Material for the Paper "How Students Plagiarize Modeling Assignments" at the Educators Symposium at MODELS'23.
DOI: 10.6084/m9.figshare.20067254
title: Data of tamarisk nebkhas in different stage.xlsx

description: Comparison of fertile island effects and soil stoichiometry characteristics in tamarisk nebkhas in different desertification stage in 2009 and 2018.
DOI: 10.6084/m9.figshare.20067254.v1
title: Data of tamarisk nebkhas in different stage.xlsx

description: Comparison of fertile island effects and soil stoichiometry characteristics in tamarisk nebkhas in different desertification stage in 2009 and 2018.
DOI: 10.57841/casdc.0001958
title: 卷积神经网络在装备磨损颗粒识别中的研究综述
DOI: 10.57841/casdc.0001959
title: 干燥环境下表面黏附性能调控研究进展
DOI: 10.21227/6fnd-tj28
title: DaMIM_Data

description: This study proposes and validates a data mining-based interface development method (DaMIM) to optimize menu-driven user interfaces. DaMIM comprises six steps—target task definition, user selection, data collection, application of data mining techniques, analysis and evaluation, and determination of alternatives. Cluster analysis is used as the data mining technique. The proposed method is validated using a program developed to measure the reaction times of menu selection. Two types of experiments are performed—name-matching experiments, in which menu names are displayed, and definition-guessing experiments, in which definitions are displayed. In addition, the experiments are classified as low density (9) or high density (14) depending on the number of menus, and alphabetical method, object-oriented method, process-oriented method, or data mining-based method (DM) are used for menu organization. The results reveal that statistically significant differences are not observed between the menu selection response times of the different menu organization methods at low density in both the name-matching and definition-guessing experiments, However, the response time of DM is the shortest in the high density case. Therefore, the effectiveness of DM is verified. The conclusions of this study are expected to contribute toward the objectification and productivity improvement of user-based interface design.
DOI: 10.20393/afe7b86a-cd0d-4390-b83d-af05b877fec8
title: Fish lengths of juvenile Atlantic salmon from the Burrishoole catchment, Co. Mayo, Ireland (1997-2019)

description: Juvenile Atlantic salmon in the Burrishoole catchment collected as part of the long-term monitoring programme. Fish were captured using electrofishing throughout the Burrishoole river system, the Srahrevagh downstream trap and the Mill Race and Salmon Leap traps.
DOI: 10.57967/hf/1019
title: emotion_chinese_english
DOI: 10.57841/casdc.0001960
title: 碳酸钙纳米颗粒复合超分子凝胶润滑剂的摩擦学性能研究
DOI: 10.6084/m9.figshare.24032145
title: 1.5 stage revision data

description: data for 1.5 stage rev
DOI: 10.6084/m9.figshare.24032145.v1
title: 1.5 stage revision data

description: data for 1.5 stage rev
DOI: 10.6084/m9.figshare.24032157
title: Subparts of LSDV genomes aligned

description: The LSDV is separated in three parts : A core genome bounded by 2 accessory genomes.Here is an alignment of these parts for the genomes available in GenBank in June 2023Clade 1 has 62 genomes, clade 2 has 4 genomes and is maybe misannotated as LSDV
DOI: 10.6084/m9.figshare.24032157.v1
title: Subparts of LSDV genomes aligned

description: The LSDV is separated in three parts : A core genome bounded by 2 accessory genomes.Here is an alignment of these parts for the genomes available in GenBank in June 2023Clade 1 has 62 genomes, clade 2 has 4 genomes and is maybe misannotated as LSDV
DOI: 10.6084/m9.figshare.24032178
title: Subparts of LSDV genomes aligned

description: The LSDV is separated in three parts : A core genome bounded by 2 accessory genomes.Here is an alignment of these parts for the genomes available in GenBank in June 2023Clade 1 has 62 genomes, clade 2 has 4 genomes and is maybe misannotated as LSDV
DOI: 10.6084/m9.figshare.24032178.v1
title: Subparts of LSDV genomes aligned

description: The LSDV is separated in three parts : A core genome bounded by 2 accessory genomes.Here is an alignment of these parts for the genomes available in GenBank in June 2023Clade 1 has 62 genomes, clade 2 has 4 genomes and is maybe misannotated as LSDV
DOI: 10.57841/casdc.0001961
title: 全氟聚醚羧酸铵离子液体的润滑性能及润滑机理研究
DOI: 10.4121/21428517
title: Data supporting the paper: Beating ringdowns of near-degenerate mechanical resonances

description: This dataset accompanies the paper: "Beating ringdowns of near-degenerate mechanical resonances", by M.H.J. de Jong, A. Cupertino, D. Shin, S. Gröblacher, F. Alijani, P.G. Steeneken and R.A. Norte, Physical Review Applied 20, 024053.<br>The zipped file contains the raw and analyzed data, as well as the measurement and analysis scripts used to obtain this data. Additionally, numerical and finite element simulations are included, as well as the figures of the paper and its supplementary.<br>
DOI: 10.4121/21428517.v2
title: Data supporting the paper: Beating ringdowns of near-degenerate mechanical resonances

description: This dataset accompanies the paper: "Beating ringdowns of near-degenerate mechanical resonances", by M.H.J. de Jong, A. Cupertino, D. Shin, S. Gröblacher, F. Alijani, P.G. Steeneken and R.A. Norte, Physical Review Applied 20, 024053.<br>The zipped file contains the raw and analyzed data, as well as the measurement and analysis scripts used to obtain this data. Additionally, numerical and finite element simulations are included, as well as the figures of the paper and its supplementary.<br>
DOI: 10.48329/c17d-4x87
title: CPRD Aurum July 2023

description: The CPRD Aurum database contains longitudinal routinely-collected electronic health records (EHR data) from UK primary care practices using EMIS Web® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care. Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval. Further information is available at https://www.cprd.com/data-access.
DOI: 10.6084/m9.figshare.24025491
title: Korean News Corpus for Changes in Child Abuse before and after COVID-19 Outbreak

description: During the COVID-19 pandemic, the issue of child abuse surged to the forefront of societal concerns in Korea. The public became increasingly attentive to child welfare issues, and every major Korean newspaper covered instances of child abuse, delving into the details of each case and the backgrounds of both victims and perpetrators. To trace the origin of this heightened awareness, we analyzed Korean news articles from the period before and after the pandemic's onset. We sourced articles from July 2017 to June 2022 (spanning two and a half years before and after the outbreak) using six search terms: "child abuse," "child neglect," "corporal punishment," "emotional abuse," "physical abuse," and "sexual abuse" on Naver News, a leading Korean news portal. Our methodology involved Part-Of-Speech (POS) tagging and stop-word removal to assess keyword frequency. Our objective was to determine if the COVID-19 pandemic was a direct catalyst for the uptick in child abuse reports or if the issue had been previously underreported. Additionally, we built dynamic semantic networks from the articles to chart monthly shifts in the narratives around child abuse in Korea and the society's evolving response to it. The gathered news data was archived in Pickle files, categorized by various dictionary keys such as publication date and time, publisher, title, URL, and article content.
DOI: 10.5281/zenodo.8282366
title: Endo_TS1_G16_PCM_chloroform_def2tzvpp_v_01_solvated

description: Gaussian 16 (C01) calculation
DOI: 10.5281/zenodo.8282365
title: Endo_TS1_G16_PCM_chloroform_def2tzvpp_v_01_solvated

description: Gaussian 16 (C01) calculation
DOI: 10.34740/kaggle/dsv/6362573
title: AutoXGB
DOI: 10.5517/ccdc.csd.cc20j75z
title: CCDC 1862640: Experimental Crystal Structure Determination

description: Related Article: Jiaxiang Chu,  Timothy G. Carroll,  Guang Wu,  Joshua Telser,  Roman Dobrovetsky,  Gabriel Ménard|2018|J.Am.Chem.Soc.|140|15375|doi:10.1021/jacs.8b09063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20j760
title: CCDC 1862641: Experimental Crystal Structure Determination

description: Related Article: Jiaxiang Chu,  Timothy G. Carroll,  Guang Wu,  Joshua Telser,  Roman Dobrovetsky,  Gabriel Ménard|2018|J.Am.Chem.Soc.|140|15375|doi:10.1021/jacs.8b09063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20j782
title: CCDC 1862643: Experimental Crystal Structure Determination

description: Related Article: Jiaxiang Chu,  Timothy G. Carroll,  Guang Wu,  Joshua Telser,  Roman Dobrovetsky,  Gabriel Ménard|2018|J.Am.Chem.Soc.|140|15375|doi:10.1021/jacs.8b09063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20j793
title: CCDC 1862644: Experimental Crystal Structure Determination

description: Related Article: Jiaxiang Chu,  Timothy G. Carroll,  Guang Wu,  Joshua Telser,  Roman Dobrovetsky,  Gabriel Ménard|2018|J.Am.Chem.Soc.|140|15375|doi:10.1021/jacs.8b09063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.