cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/eqdkvy/eagtky
title: liveStage-frame66.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/siycym
title: liveStage-frame77.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/zhretl
title: liveStage-frame132.mat

description: :unav
DOI: 10.7910/dvn/ghcv1g/dkidls
title: ML_300msEM200_MP1-176.mat

description: :unav
DOI: 10.7910/dvn/ghcv1g/gzwn4w
title: ML100xZnS-Mn-cys_1s_EM200_thinCircCvrSlp_SingleMP-1-27.mat

description: :unav
DOI: 10.7910/dvn/ghcv1g/xzlen6
title: ML_300msEM200_MP1-87.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/8bu0jv
title: liveStage-frame2.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/bxtgns
title: liveStage-frame174.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/klqnuz
title: liveStage-frame174.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/mfmmzu
title: liveStage-frame3.mat

description: :unav
DOI: 10.7910/dvn/eqdkvy/qi4fk4
title: liveStage-frame155.mat

description: :unav
DOI: 10.6084/m9.figshare.25037558
title: Research data on attentional bias

description: 注意力偏差
DOI: 10.6084/m9.figshare.25037558.v1
title: Research data on attentional bias

description: 注意力偏差
DOI: 10.6084/m9.figshare.25037561
title: Genome and annotation of Albizia julibrissin

description: We use PacBio HiFi and Hi-C data to assemble a chromosome-level genome for Albizia julibrissin
DOI: 10.6084/m9.figshare.25037573
title: Genome and annotation of Leucaena leucocephala

description: We use PacBio HiFi and Hi-C data to assemble a chromosome-level genome for Leucaena leucocephala
DOI: 10.6084/m9.figshare.25037617.v1
title: Dataset_S6.xlsx from The causes of species richness patterns among clades

description: Two major types of species richness patterns are spatial (e.g. the latitudinal diversity gradient) and clade-based (e.g. the dominance of angiosperms among plants). Studies have debated whether clade-based richness patterns are explained primarily by larger clades having faster rates of species accumulation (speciation minus extinction over time; diversification-rate hypothesis) or by simply being older (clade-age hypothesis). However, these studies typically compared named clades of the same taxonomic rank, such as phyla and families. This study design is potentially biased against the clade-age hypothesis, since clades of the same rank may be more similar in age than randomly selected clades. Here, we analyse the causes of clade-based richness patterns across the tree of life using a large-scale, time-calibrated, species-level phylogeny and random sampling of clades. We find that within major groups of organisms (animals, plants, fungi, bacteria, archaeans), richness patterns are most strongly related to clade age. Nevertheless, weaker relationships with diversification rates are present in animals and plants. These overall results contrast with similar large-scale analyses across life based on named clades, which showed little effect of clade age on richness. More broadly, these results help support the overall importance of time for explaining diverse types of species richness patterns.
DOI: 10.6084/m9.figshare.25037582
title: Genome and annotation of Mimosa bimucronata

description: We use PacBio HiFi and Hi-C data to assemble a chromosome-level genome for Mimosa bimucronata
DOI: 10.22002/8v0dd-nxh68
title: RAW and FTStatistic extracted files for methylphosphonic acid forensics

description: This repository contains instrument .RAW files and data extracted from those .RAW files via FTStatistic.
DOI: 10.6084/m9.figshare.25037651
title: Supplementary Material for: Difelikefalin in Black/African American Hemodialysis Patients with Moderate-to-Severe Pruritus: Post-hoc Analysis of KALM-1 and KALM-2

description: Black and African American (AA) people are over-represented in the kidney failure population; therefore, the safety and efficacy of difelikefalin in Black/AA patients was evaluated. This was a post hoc, pooled exploratory subgroup analysis of the Phase 3 KALM-1 and -2 studies. Patients undergoing hemodialysis (HD) who had moderate-to-severe chronic kidney disease-associated pruritus (CKD-aP) at enrollment were stratified into self-reported Black/AA or White subgroups. Patients were randomized (1:1) to receive intravenous (IV) difelikefalin 0.5 µg/kg or placebo for 12 weeks. Difelikefalin efficacy was assessed with validated patient-reported outcome questionnaires: 24-hour Worst Itch Numerical Rating Scale (WI-NRS), 5-D itch, and Skindex 10. There were 249 (29.3%) patients from the KALM studies that self-identified as Black/AA (n=135 difelikefalin; n=114 placebo). Clinically meaningful (≥3-point) reduction in WI-NRS score was achieved by 47.9% of Black/AA patients with difelikefalin versus 24.6% with placebo (P&lt;0.001). More Black/AA patients achieved a ≥5-point 5-D itch total improvement (54.9% vs 35.7%; P=0.013) and a ≥15-point Skindex-10 score improvement with difelikefalin versus placebo (49.0% vs 28.9%; P=0.006) compared with White patients. Incidence of treatment-emergent adverse events (TEAEs) was higher for Black/AA patients (difelikefalin: 78.5%; placebo: 70.8%) versus White patients (difelikefalin: 64.8%; placebo: 61.8%). In this post hoc analysis, difelikefalin was efficacious in the Black/AA population and had an acceptable safety profile.
DOI: 10.6084/m9.figshare.25037453
title: 折多山-贡嘎山杂岩体晚渐新世退变质过程：来自长英质熔体的记录

description: 锆石U-Pb测试结果和稀土元素分析结果
DOI: 10.6084/m9.figshare.25037453.v1
title: 折多山-贡嘎山杂岩体晚渐新世退变质过程：来自长英质熔体的记录

description: 锆石U-Pb测试结果和稀土元素分析结果
DOI: 10.6084/m9.figshare.25037495
title: Polyploid Tibetan Prunus genome

description: Other Tibetan Prunus genome
DOI: 10.6084/m9.figshare.25037495.v1
title: Polyploid Tibetan Prunus genome

description: Other Tibetan Prunus genome
DOI: 10.6084/m9.figshare.25037618
title: Genome and annotation of Biancaea sappan

description: We use PacBio HiFi and Hi-C data to assemble a chromosome-level genome for Biancaea sappan
DOI: 10.5281/zenodo.10547611
title: VAE extracted latent variables

description: This dataset includes VAE-extracted latent variables from Zhang et al.
DOI: 10.6084/m9.figshare.25037672
title: Serious Video Game to Improve the Learning of Software Design Patterns

description: The general objective of the research was to improve the learning of software design patterns in a private university in Trujillo in the year 2023. The type of research was applied with an experimental design of a pure experimental degree, a sample of 60 students of the 4th semester of the Systems Engineering program was taken, where 30 were assigned to the Control Group (CG) and 30 to the Experimental Group (EG), the latter used a serious video game; by means of questionnaires and observation cards the information was collected; subsequently the data was analyzed and processed with the statistical software Jamovi version 2.4.11. The results were an increase of 5 points, equivalent to 25% in the Level of Knowledge Retention (LKR), an increase of 1 point, equivalent to 5% in the Level of Understanding (LU), an increase of 0.46 points, equivalent to 9.2% in the Level of Motivation (LM) and an increase of 0.50 points, equivalent to 10% in the Level of Satisfaction (LS). It was concluded that the use of a serious video game significantly improved the learning of software design patterns in a private university in Trujillo.
DOI: 10.6084/m9.figshare.25027082
title: Risk of Bias-Favipiravir for covid-19

description: Favipiravir for covid-19
DOI: 10.5281/zenodo.10547660
title: MRSA reference strains Ionic Current Datasets
DOI: 10.5281/zenodo.10547661
title: MRSA reference strains Ionic Current Datasets
DOI: 10.5281/zenodo.10547724
title: penguinscape

description: Data related to the reconstruction of high-resolution spatial information on penguin colonies from low-resolution aerial-view data.
DOI: 10.5281/zenodo.10547725
title: penguinscape

description: Data related to the reconstruction of high-resolution spatial information on penguin colonies from low-resolution aerial-view data.
DOI: 10.6084/m9.figshare.25038242
title: Aridity dependent sensitivity of grassland productivity to dry-wet climate extremes—data for XBS

description: Increasing intensity and frequency of dry-wet extremes (DWEs) under climate change is expected to affect rainfall-constrained ecosystems, particularly grassland ecosystems in arid and semi-arid zones. However, our understanding of DWEs impacts on grassland productivity remains limited, especially under naturally occurring climate extremes. Here, using a long-term (from 26 to 54 years) net primary productivity (NPP) dataset across 13 grasslands, we found that the direct effects of DWEs on NPP are aridity-dependent, with more arid grasslands showing higher vulnerability. Moreover, we revealed a pronounced shift in the relationship between extreme drought-induced legacy effect on NPP and aridity index (precipitation/potential evapotranspiration) when aridity index exceeds a threshold of 0.43. These findings provide compelling evidence for ambient climate-dependent resistance and resilience of grassland NPP to DWEs and highlight the need for considering the role of extreme climate conditions when forecasting the future of grassland productivity and stability in a warmer world.
DOI: 10.5281/zenodo.10257552
title: EnrichKit: a multi-omics tool for livestock research

description: This is the backend database for the web application EnrichKit.
This EnrichKitDB.sqlite object is created following this repo - https://github.com/liulihe954/EnrichKitDB
The main EnrichKit repo can be found there - https://github.com/liulihe954/EnrichKitWeb
DOI: 10.5281/zenodo.10257551
title: EnrichKit: a multi-omics tool for livestock research

description: This is the backend database for the web application EnrichKit.

This EnrichKitDB.sqlite object is created following this repo - https://github.com/liulihe954/EnrichKitDB

The main EnrichKit repo can be found there - https://github.com/liulihe954/EnrichKitWeb
DOI: 10.5281/zenodo.10535657
title: EnrichKit: a multi-omics tool for livestock research

description: This is the backend database for the web application EnrichKit.

This EnrichKitDB.sqlite object is created following this repo - https://github.com/liulihe954/EnrichKitDB

The main EnrichKit repo can be found there - https://github.com/liulihe954/EnrichKitWeb
DOI: 10.5281/zenodo.10547748
title: The new constitution of the Republic of Uzbekistan
DOI: 10.5281/zenodo.10547749
title: The new constitution of the Republic of Uzbekistan
DOI: 10.5281/zenodo.10547769
title: Efektifitas Penggunaan Media ICT Berbasis Android Terhadap Hasil Belajar Fisika Pada Konsep Pengukuran di Kelas X SMK Negeri 5 Tidore Kepulauan
DOI: 10.5281/zenodo.10547770
title: Efektifitas Penggunaan Media ICT Berbasis Android Terhadap Hasil Belajar Fisika Pada Konsep Pengukuran di Kelas X SMK Negeri 5 Tidore Kepulauan
DOI: 10.5281/zenodo.10531849
title: Results of the First Intl. Competition on Automated Program Repair (APR-COMP 2024)

description: APR-COMP 2024 - Competition ResultsMore information at https://apr-comp.github.io

 

File Content

--Overall results sheet for all Tracks
--AI Java Track
------Results sheet for AI Java Track
------Artifacts of repair tool APRER
------Artifacts of repair tool ARJA
------Artifacts of repair tool ARJA-E
------Artifacts of repair tool ET
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool RepairLLAMA
------Artifacts of repair tool TBAR
------Artifacts of validation tool Valkyrie

--AI Python Track
------Results sheet for AI Python Track
------Artifacts of repair tool Darjeeling
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool RepairCatPython
------Artifacts of validation tool Valkyrie


--Education C Track
------Results sheet for Education C Track
------Artifacts of repair tool F1X
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool VeriFix
------Artifacts of validation tool Valkyrie

--Education Python Track
------Results sheet for Education Python Track
------Artifacts of repair tool Brafar
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool Refactory
------Artifacts of validation tool Valkyrie


--Functional Java Track
------Results sheet for Functional Java Track
------Artifacts of repair tool APRER
------Artifacts of repair tool ARJA
------Artifacts of repair tool ARJA-E
------Artifacts of repair tool ET
------Artifacts of repair tool GRT5
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool RepairCatJava
------Artifacts of repair tool RepairLLAMA
------Artifacts of repair tool TBAR
------Artifacts of validation tool Valkyrie

--Functional C Track
------Results sheet for Functional C Track
------Artifacts of repair tool F1X
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool Darjeeling
------Artifacts of validation tool Valkyrie
DOI: 10.5281/zenodo.10531850
title: Results of the First Intl. Competition on Automated Program Repair (APR-COMP 2024)

description: APR-COMP 2024 - Competition ResultsMore information at https://apr-comp.github.io

 

File Content

--Overall results sheet for all Tracks
--AI Java Track
------Results sheet for AI Java Track
------Artifacts of repair tool APRER
------Artifacts of repair tool ARJA
------Artifacts of repair tool ARJA-E
------Artifacts of repair tool ET
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool RepairLLAMA
------Artifacts of repair tool TBAR
------Artifacts of validation tool Valkyrie

--AI Python Track
------Results sheet for AI Python Track
------Artifacts of repair tool Darjeeling
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool RepairCatPython
------Artifacts of validation tool Valkyrie


--Education C Track
------Results sheet for Education C Track
------Artifacts of repair tool F1X
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool VeriFix
------Artifacts of validation tool Valkyrie

--Education Python Track
------Results sheet for Education Python Track
------Artifacts of repair tool Brafar
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool Refactory
------Artifacts of validation tool Valkyrie


--Functional Java Track
------Results sheet for Functional Java Track
------Artifacts of repair tool APRER
------Artifacts of repair tool ARJA
------Artifacts of repair tool ARJA-E
------Artifacts of repair tool ET
------Artifacts of repair tool GRT5
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool RepairCatJava
------Artifacts of repair tool RepairLLAMA
------Artifacts of repair tool TBAR
------Artifacts of validation tool Valkyrie

--Functional C Track
------Results sheet for Functional C Track
------Artifacts of repair tool F1X
------Artifacts of repair tool LLMR (GPT4 based)
------Artifacts of repair tool Darjeeling
------Artifacts of validation tool Valkyrie
DOI: 10.25946/25037576
title: "Management Information Systems for Tree Fruit" Database of Literature Search Metadata

description: Literature database created from the review (published in Horticulturae 2024) conducted on "Management Information Systems for Tree Fruit" with adoption of a multivocal approach, a combined systematic and grey literature review)
DOI: 10.25946/25037576.v1
title: "Management Information Systems for Tree Fruit" Database of Literature Search Metadata

description: Literature database created from the review (published in Horticulturae 2024) conducted on "Management Information Systems for Tree Fruit" with adoption of a multivocal approach, a combined systematic and grey literature review)
DOI: 10.25919/h22y-ec46
title: CMIP6 global wind-wave 21st century climate projections phase 2

description: This dataset contains archived 3-hourly outputs from wave climate simulations at 0.5-degree global grid resolution carried out using an Irregular-Regular-Irregular (IRI) three-grid system to model the polar regions, and implemented in WaveWatch III (v6.07).
The model configuration is outlined in manuscripts:
- Meucci A., Young I. R., Hemer M., Trenham C., and Watterson I. 2023. 140 Years of Global Ocean Wind-wave Climate Derived from CMIP6 ACCESS-CM2 and EC-Earth3 GCMs. Global Trends, Regional Changes, and Future Projections. Journal of Climate, 1-56. DOI: https://doi.org/10.1175/JCLI-D-21-0929.1
- Meucci A., Young I.R., Trenham C. and Hemer M., (in prep). CMIP6-derived wave climate observation-based model ensemble.

Wave model forcing consisted of surface wind and sea-ice concentration fields from 6 CMIP6 models. The model is run with the latest observation-based source term parametrization ST6, using wind-drag coefficient "CDFAC" parameter value of 1.

Archived variables, in monthly netCDF files for all simulations, include wind speed, significant wave height, second order mean wave period, peak frequency, mean and peak wave direction, wave energy, and 3 partitions of significant wave height.

In phase 2, each model is simulated in three 30-year time slices: historical (1985-2014), SSP1-2.6 (2071-2100) and SSP5-8.5 (2071-2100).
In total, this dataset contains over 500 simulated model years of data.

Gridded field data are provided in this collection. Directional spectra output points are available on request.

Directory Structure:
UniMelb-CSIRO_CMIP6_projections_phase2
CMIP6 historical (spans 1985-2014)
-historical
-- AWI-CM-1-1-MR
-- CMCC-CM2-SR5
-- IPSL-CM6A-LR
-- KIOST-ESM
-- MPI-ESM1-2-LR
-- MRI-ESM2-0
CMIP6 projections (spans 2071-2100)
-ssp126
-- AWI-CM-1-1-MR
-- CMCC-CM2-SR5
-- IPSL-CM6A-LR
-- KIOST-ESM
-- MPI-ESM1-2-LR
-- MRI-ESM2-0
-ssp585
-- AWI-CM-1-1-MR
-- CMCC-CM2-SR5
-- IPSL-CM6A-LR
-- KIOST-ESM
-- MPI-ESM1-2-LR
-- MRI-ESM2-0
DOI: 10.6084/m9.figshare.25038349
title: Dataset used for analysis from Anti-predator defenses are linked with high levels of genetic differentiation in frogs

description: Complete dataset for genetic differentiation and topographic distances
DOI: 10.6084/m9.figshare.25038349.v1
title: Dataset used for analysis from Anti-predator defenses are linked with high levels of genetic differentiation in frogs

description: Complete dataset for genetic differentiation and topographic distances
DOI: 10.6084/m9.figshare.25038352
title: Ref-species.xlsx from Anti-predator defenses are linked with high levels of genetic differentiation in frogs

description: Predator–prey interactions have been suggested as drivers of diversity in different lineages, and the presence of anti-predator defences in some clades is linked to higher rates of diversification. Warning signals are some of the most widespread defences in the animal world, and there is evidence of higher diversification rates in aposematic lineages. The mechanisms behind such species richness, however, are still unclear. Here, we test whether lineages that use aposematism as anti-predator defense exhibit higher levels of genetic differentiation between populations, leading to increased opportunities for divergence. We collated from the literature more than 3000 pairwise genetic differentiation values across more than 700 populations from over 60 amphibian species. We find evidence that over short geographical distances, populations of species of aposematic lineages exhibit greater genetic divergence relative to species that are not aposematic. Our results support a scenario where the use of warning signals could restrict gene flow, and suggest that anti-predator defences could impact divergence between populations and potentially have effects at a macro-evolutionary scale.
DOI: 10.6084/m9.figshare.25038352.v1
title: Ref-species.xlsx from Anti-predator defenses are linked with high levels of genetic differentiation in frogs

description: Predator–prey interactions have been suggested as drivers of diversity in different lineages, and the presence of anti-predator defences in some clades is linked to higher rates of diversification. Warning signals are some of the most widespread defences in the animal world, and there is evidence of higher diversification rates in aposematic lineages. The mechanisms behind such species richness, however, are still unclear. Here, we test whether lineages that use aposematism as anti-predator defense exhibit higher levels of genetic differentiation between populations, leading to increased opportunities for divergence. We collated from the literature more than 3000 pairwise genetic differentiation values across more than 700 populations from over 60 amphibian species. We find evidence that over short geographical distances, populations of species of aposematic lineages exhibit greater genetic divergence relative to species that are not aposematic. Our results support a scenario where the use of warning signals could restrict gene flow, and suggest that anti-predator defences could impact divergence between populations and potentially have effects at a macro-evolutionary scale.
DOI: 10.5281/zenodo.10547537
title: data from: Genomic architecture controls multivariate adaptation to climate change

description: All data used for the 2024 study "Genomic architecture controls multivariate adaptation to climate change" by Drew E. Terasaki Hart and Ian J. Wang.

The study presents simulation results (created using [Geonomics](https://geonomics.readthedocs.io/)) across 18 simulation scenarios of interest, defined by the complete cross of 3 values of linkage (strong, weak, independent), 3 values of polygenicity (low, moderate, high) and 2 values of genotypic redundancy (low and high).

The archived data is a single zipfile comprising two subdirectories:



`output_100_final_for_analysis`, which contains all simulation outputs from each of the 100 main and null (i.e., control) iterations run for the high-genotypic-redundancy scenarios, and all identical outputs for the lo1-genotypic-redundancy scenarios:



3 CSV files:



a table of directional gene flow data, for all 9 main and 9 null scenarios for the given iteration's redundancy level (filename formatted as 'output_PID-<COMPUTE_PROCESS_ID>_DIR.csv')

 a table of summary statistic time series, for all 9 main and 9 null scenarios for the given iteration's redundancy level (filename formatted as 'output_PID-<COMPUTE_PROCESS_ID>_TS_DATA.csv'

a table of summary statistics (single values per iteration, rather than time series), for all 9 main and 9 null scenarios for the given iteration's redundancy level (filename formatted as 'output_PID-<COMPUTE_PROCESS_ID>_TS_DATA.csv'



a set of 180 directories (with names formatted as 'GNX_mod-<ITERATION_NULLNESS>_L<LINKAGE>_G<POLYGENICITY>_its0_randID<RANDOM_ID>_<COMPUTE_PROCESS_ID>'), generated by Geonomics, containing the automated CSV and VCF outputs produced by Geonomics.



`analysis` contains all analysis outputs (processed and summarized data, statistical tests, and figures) derived from that data and used to produce the results presented in the paper.