cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14124074
title: Supplementary Material for: Ribosome Incorporation Induces EMT-like Phenomenon with Cell Cycle Arrest in Human Breast Cancer Cell

description: Although ribosomes are generally known to be a translational machinery, some ribosomal proteins also have accessory functions involving early development and differentiation. Previously, we reported that ribosome incorporation into human dermal fibroblasts generated embryoid body-like cell clusters, altered cellular fate, and differentiated into cells of all 3 germ layers. However, the molecular phenomena induced by ribosome incorporation in the cell remained unknown. Here, we demonstrate that ribosome incorporation into human breast cancer cell MCF7 leads to ribosome-induced cell clusters (RICs) formation accompanying with epithelial-mesenchymal transition (EMT)-like gene expression. Following ribosome incorporation, MCF7 cells cease proliferation, which is caused by inhibition of cell cycle transition from G0 to G1 phase. Further, MCF7 RICs show induced expression of EMT markers, TGF-β1 and Snail along with autophagy markers and tumor suppressor gene p53. These findings indicate that the incorporation of ribosome into cancer cells induces an EMT-like phenomenon and changes the cancer cell characteristics.
DOI: 10.6084/m9.figshare.14124071
title: Table S1. List of the differential metabolites. .docx

description: Supplemental Table S1 of LC-37
DOI: 10.6084/m9.figshare.14124074.v1
title: Supplementary Material for: Ribosome Incorporation Induces EMT-like Phenomenon with Cell Cycle Arrest in Human Breast Cancer Cell

description: Although ribosomes are generally known to be a translational machinery, some ribosomal proteins also have accessory functions involving early development and differentiation. Previously, we reported that ribosome incorporation into human dermal fibroblasts generated embryoid body-like cell clusters, altered cellular fate, and differentiated into cells of all 3 germ layers. However, the molecular phenomena induced by ribosome incorporation in the cell remained unknown. Here, we demonstrate that ribosome incorporation into human breast cancer cell MCF7 leads to ribosome-induced cell clusters (RICs) formation accompanying with epithelial-mesenchymal transition (EMT)-like gene expression. Following ribosome incorporation, MCF7 cells cease proliferation, which is caused by inhibition of cell cycle transition from G0 to G1 phase. Further, MCF7 RICs show induced expression of EMT markers, TGF-β1 and Snail along with autophagy markers and tumor suppressor gene p53. These findings indicate that the incorporation of ribosome into cancer cells induces an EMT-like phenomenon and changes the cancer cell characteristics.
DOI: 10.5517/ccdc.csd.cc2182gw
title: CCDC 1884597: Experimental Crystal Structure Determination

description: Related Article: L. El Ghayati, Y. Ramli, T. Hökelek, M. Labd Taha, J.T. Mague, E.M. Essassi|2019|Acta Crystallogr.,Sect.E:Cryst.Commun.|75|94|doi:10.1107/S2056989018017565
DOI: 10.5281/zenodo.4095210
title: Measurement data of the response of a Li-glass/multi-anode photomultiplier detector to collimated thermal-neutron beams

description: Neutron data taken at the Institute for Energy Technology (IFE) reactor in Norway 2018 using a prototype SoNDe detector based on a Lithium-6 scintillating glass and Hamamatsu multi-anode photomultiplier tube. See further details in the paper based on this dataset (https://doi.org/10.1016/j.nima.2021.165170). The .csv data is ordered so every event is written as 64 lines. The line number within an event represents the pixel number according to the translation in lines_to_pixel_numbers.txt . The column 'sample' contains the readout ADC channel for that pixel and event.
DOI: 10.5281/zenodo.4095209
title: Measurement data of the response of a Li-glass/multi-anode photomultiplier detector to collimated thermal-neutron beams

description: Neutron data taken at the Institute for Energy Technology (IFE) reactor in Norway 2018 using a prototype SoNDe detector based on a Lithium-6 scintillating glass and Hamamatsu multi-anode photomultiplier tube. See further details in the paper based on this dataset (https://doi.org/10.1016/j.nima.2021.165170). The .csv data is ordered so every event is written as 64 lines. The line number within an event represents the pixel number according to the translation in lines_to_pixel_numbers.txt . The column 'sample' contains the readout ADC channel for that pixel and event.
DOI: 10.14278/rodare.822
title: ASTRID-DYN3D

description: ASTRID-DYN3D: XS generation and full core simulations
DOI: 10.14278/rodare.821
title: ASTRID-DYN3D

description: ASTRID-DYN3D: XS generation and full core simulations
DOI: 10.5519/qd.abiqq2i0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.25625/rcvhdz/k0pct3
title: unders_2_v8_bartref.cfl

description: :unav
DOI: 10.25625/rcvhdz/8u2wes
title: unders_2_v8_bartref.hdr

description: :unav
DOI: 10.25625/rcvhdz/sdmkxn
title: unders_2_v8.cfl

description: :unav
DOI: 10.25625/rcvhdz/ciodj1
title: unders_2_v8.hdr

description: :unav
DOI: 10.25625/rcvhdz
title: ngsolve-bart data

description: Data for the ngsolve-bart example
DOI: 10.5519/qd.wg7ut93w
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8 records)
DOI: 10.5519/qd.rrj1lf4z
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (13 records)
DOI: 10.5063/np22v1
title: Matteo Marchioro. 2021. Improved light traps for early-detection of alien insects travelling worldwide in shipping containers. Knowledge Network for Biocomplexity.

description: The attraction of light of different colors (white, infrared, ultraviolet, red) applied on sticky traps modified adding entomological glue and insecticide was tested on a Lepidoptera (Cadra cautella), a Diptera (Drosophila melanogaster), and two Coleoptera (Sitophilus zeamais and Tribolium castaneum) released inside a shipping container. Overall, insects showed attraction for all the colors except for infrared light. C. cautella showed no preference among white, ultraviolet or red; D. melanogaster preferred ultraviolet and white over red; beetles had a much greater attraction to red. Lastly, the stronger entomological glue improved catches of beetles whereas insecticide has no effect.
DOI: 10.25345/c5z80z
title: MassIVE MSV000086958 - GNPS-FeaturebasedMolecularNetworkingFRDerivativesJNP
title: Both, the soil bacterium Chromobacterium vaccinii and the bacterial endosymbiont Candidatus Burkholderia crenata of the plant Ardisia crenata are producers of FR900359 (FR). This cyclic depsipeptide is a potent and selective Gq protein inhibitor and used extensively to investigate the intracellular signaling of G protein coupled receptors (GPCRs). In this study, the metabolomes of both FR producers were investigated and compared using feature-based molecular networking (FBMN). As a result, 30 to date unknown FR derivatives were identified, one third of which being unique to C. vaccinii. Guided by MS, a novel FR derivative, FR-6 (compound 1), was isolated, and its structure unambiguously established. In a whole cell biosensing assay based on detection of dynamic mass redistribution (DMR) as readout for Gq inhibition, FR-6 suppressed Gq signaling with micromolar potency (pIC50=5.56). This functional activity was confirmed in radioligand binding assays (pKi=7.50). This work demonstrates the power of molecular networking, guiding the way to a novel Gq inhibiting FR derivative, and underlining the potency of FR as Gq inhibitor.
DOI: 10.17632/4whjkw38nz.1
title: Data for: Coupled multi-physics evaluation of an accelerator driven Aqueous Homogeneous Subcritical System for medical isotopes production

description: Data
DOI: 10.5281/zenodo.4560687
title: In Situ Sequencing data used in "ISTDECO: In Situ Transcriptomics Decoding by Deconvolution"

description: This repository contains a few image slices from an in situ sequencing experiment [1]. The data is organized as follows: Each folder corresponds to a staining round. Each .tif image corresponds to a channel. The codebook can be loaded from the .mat file using MATLAB's load function or scipy.io.loadmat in Python. <strong>Acknowledgment:</strong> We kindly thank Qian et al. [1] for sharing their image data. <strong>References</strong> [1] Qian, Xiaoyan, et al. "Probabilistic cell typing enables fine mapping of closely related cell types in situ." Nature methods 17.1 (2020): 101-106.
DOI: 10.5281/zenodo.4560686
title: In Situ Sequencing data used in "ISTDECO: In Situ Transcriptomics Decoding by Deconvolution"

description: This repository contains a few image slices from an in situ sequencing experiment [1]. The data is organized as follows: Each folder corresponds to a staining round. Each .tif image corresponds to a channel. The codebook can be loaded from the .mat file using MATLAB's load function or scipy.io.loadmat in Python. <strong>Acknowledgment:</strong> We kindly thank Qian et al. [1] for sharing their image data. <strong>References</strong> [1] Qian, Xiaoyan, et al. "Probabilistic cell typing enables fine mapping of closely related cell types in situ." Nature methods 17.1 (2020): 101-106.
DOI: 10.5281/zenodo.4564170
title: pointdata

description: Data accompanying the paper: Schobben, M., Kienhuis, M., Polerecky.
DOI: 10.5281/zenodo.4545742
title: PUMA pipeline output

description: Output of the PUMA (PUblications Metadata Augmentation) software pipeline which takes a list of journal articles and augments it with metadata from external sources. This augmented metadata is then processed to generate data files and an explorable/searchable set of HTML pages. The PUMA pipeline is available at: https://github.com/OllyButters/puma and is described at: https://doi.org/10.12688/f1000research.25484.1 These attached files are the result of running the pipeline on the list of publications described at: https://doi.org/10.12688/wellcomeopenres.14986.1 on 2021-01-15. Rerunning the pipeline on this list may result in slightly different outputs due to the changing content of the external metadata sources. <strong>Screenshots of the output HTML pages:</strong> PUMA_home_2021-01-15.png - Summary of all publications. PUMA_2011_2021-01-15.png - All publications from 2011. PUMA_map_2021-01-15.png - Choropleth map of first author's country. PUMA_asthma_2021-01-15.png - All publications with an asthma MeSH. PUMA_metrics_2021-01-15.png - Simple metrics. PUMA_word_cloud_2021-01-15.png - Word cloud of abstract text. PUMA_coverage_2021-01-15.png - Table showing completeness of metadata. <strong>Generated data files</strong> authors.csv - Frequency of authors. first_authors.csv - Frequency of first authors. first_authors_inst.csv - Frequency of first authors' institutes. journals.csv - Frequency of journals published in. abstract_lemmatized.csv - Frequency of lemmatized abstract words. abstract_lemmatized_by_year.csv - Frequency of lemmatized abstract words broken down by year. title_lemmatized.csv - Frequency of lemmatized title words. title_lemmatized_by_year.csv - Frequency of lemmatized title words broken down by year. keywords_lemmatized.csv - Frequency of lemmatized keywords. keywords_lemmatized_by_year.csv - Frequency of lemmatized keywords broken down by year.
DOI: 10.5281/zenodo.4545741
title: PUMA pipeline output

description: Output of the PUMA (PUblications Metadata Augmentation) software pipeline which takes a list of journal articles and augments it with metadata from external sources. This augmented metadata is then processed to generate data files and an explorable/searchable set of HTML pages. The PUMA pipeline is available at: https://github.com/OllyButters/puma and is described at: https://doi.org/10.12688/f1000research.25484.1 These attached files are the result of running the pipeline on the list of publications described at: https://doi.org/10.12688/wellcomeopenres.14986.1 on 2021-01-15. Rerunning the pipeline on this list may result in slightly different outputs due to the changing content of the external metadata sources. <strong>Screenshots of the output HTML pages:</strong> PUMA_home_2021-01-15.png - Summary of all publications. PUMA_2011_2021-01-15.png - All publications from 2011. PUMA_map_2021-01-15.png - Choropleth map of first author's country. PUMA_asthma_2021-01-15.png - All publications with an asthma MeSH. PUMA_metrics_2021-01-15.png - Simple metrics. PUMA_word_cloud_2021-01-15.png - Word cloud of abstract text. PUMA_coverage_2021-01-15.png - Table showing completeness of metadata. <strong>Generated data files</strong> authors.csv - Frequency of authors. first_authors.csv - Frequency of first authors. first_authors_inst.csv - Frequency of first authors' institutes. journals.csv - Frequency of journals published in. abstract_lemmatized.csv - Frequency of lemmatized abstract words. abstract_lemmatized_by_year.csv - Frequency of lemmatized abstract words broken down by year. title_lemmatized.csv - Frequency of lemmatized title words. title_lemmatized_by_year.csv - Frequency of lemmatized title words broken down by year. keywords_lemmatized.csv - Frequency of lemmatized keywords. keywords_lemmatized_by_year.csv - Frequency of lemmatized keywords broken down by year.
DOI: 10.15128/r2qv33rw65q
title: The magnetic field, temperature, strain and angular dependence of the critical current density for Nb-Ti [dataset]

description: A scaling law for J c in commercial Nb-Ti wire is proposed that describes its magnetic field, temperature and strain dependence. The scaling law is used to fit extensive measurements of the total strand critical current density, J c,TS(B, T, ε), with the applied field orthogonal to the axis of the wire. We present critical current density, heat capacity and resistivity measurements to obtain ${B}_{{\rm{c}}2}^{* }(\theta )$, which shows clear angular anisotropy. At 4.2 K, the resistivity data show ${B}_{{\rm{c}}2}^{* }(B\parallel J)-{B}_{{\rm{c}}2}^{* }(B\perp J)\approx 1\,{\rm{T}}$. We also discuss whether the fusion community should consider re-optimising standard commercial Nb-Ti wires that were developed for MRI applications at ~ 5 T, to produce higher J c at say 10T, and higher upper critical fields, perhaps using quaternary Nb-Ti alloys with artificial pinning centres.
DOI: 10.5281/zenodo.4564189
title: Supporting information for "Thermal alteration history of Fenghuoshan Group, Hoh Xil Basins, northern Tibetan Plateau: Insights from clumped isotope thermometry"

description: The supporting information includes raw isotopic analysis data for "Thermal alteration history of Fenghuoshan Group, Hoh Xil Basins, northern Tibetan Plateau: Insights from clumped isotope thermometry" by Kong et al.
DOI: 10.6084/m9.figshare.14124160
title: Matlab source code - Figure 1;Matlab source code - Figure 2;Matlab auxiliary file from Sparsity induced by covariance transformation: some deterministic and probabilistic results. 2 October 2020 3 February 2021

description: Matlab source code for generating Figure 1;Matlab source code for generating Figure 2;Matlab source code called by both other Matlab scripts above
DOI: 10.6084/m9.figshare.14124160.v1
title: Matlab source code - Figure 1;Matlab source code - Figure 2;Matlab auxiliary file from Sparsity induced by covariance transformation: some deterministic and probabilistic results. 2 October 2020 3 February 2021

description: Matlab source code for generating Figure 1;Matlab source code for generating Figure 2;Matlab source code called by both other Matlab scripts above
DOI: 10.6084/m9.figshare.14124166
title: Supplementary Material 3 from The oldest Devonian circumpolar ray-finned fish?

description: Data and commands for Bayesian analysis using MrBayes
DOI: 10.6084/m9.figshare.14124169
title: Supplementary Material 2 from The oldest Devonian circumpolar ray-finned fish?

description: Data and commands for Parsimony analysis using PAUP
DOI: 10.6084/m9.figshare.14124169.v1
title: Supplementary Material 2 from The oldest Devonian circumpolar ray-finned fish?

description: Data and commands for Parsimony analysis using PAUP
DOI: 10.6084/m9.figshare.14124166.v1
title: Supplementary Material 3 from The oldest Devonian circumpolar ray-finned fish?

description: Data and commands for Bayesian analysis using MrBayes
DOI: 10.25430/researchdata.cab.unipd.it.00000440
title: Matteo Marchioro. 2021. Improved light traps for early-detection of alien insects travelling worldwide in shipping containers.

description: The attraction of light of different colors (white, infrared, ultraviolet, red) applied on sticky traps modified adding entomological glue and insecticide was tested on a Lepidoptera (Cadra cautella), a Diptera (Drosophila melanogaster), and two Coleoptera (Sitophilus zeamais and Tribolium castaneum) released inside a shipping container. Overall, insects showed attraction for all the colors except for infrared light. C. cautella showed no preference among white, ultraviolet or red; D. melanogaster preferred ultraviolet and white over red; beetles had a much greater attraction to red. Lastly, the stronger entomological glue improved catches of beetles whereas insecticide has no effect.
DOI: 10.25828/7er4-cz67
title: Integrated Business Establishment Survey 2014, Phase II
DOI: 10.6084/m9.figshare.14124208
title: Table S2 from Where the wild things were: intrinsic and extrinsic extinction predictors in the world's most depleted mammal fauna

description: Caribbean mammal body masses
DOI: 10.6084/m9.figshare.14124208.v1
title: Table S2 from Where the wild things were: intrinsic and extrinsic extinction predictors in the world's most depleted mammal fauna

description: Caribbean mammal body masses
DOI: 10.6084/m9.figshare.14124211
title: Table S1 from Where the wild things were: intrinsic and extrinsic extinction predictors in the world's most depleted mammal fauna

description: Caribbean mammal population and island data
DOI: 10.6084/m9.figshare.14124211.v1
title: Table S1 from Where the wild things were: intrinsic and extrinsic extinction predictors in the world's most depleted mammal fauna

description: Caribbean mammal population and island data
DOI: 10.6084/m9.figshare.14124152
title: Three-Dimensional Mapping of Shear Wave Velocity in Hu-man Tendon: A Proof of Concept Study

description: This is the publicly archived data set pertaining to the publication with the title: Three-Dimensional Mapping of Shear Wave Velocity in Hu-man Tendon: A Proof of Concept Study
DOI: 10.6084/m9.figshare.14124152.v2
title: Three-Dimensional Mapping of Shear Wave Velocity in Hu-man Tendon: A Proof of Concept Study

description: This is the publicly archived data set pertaining to the publication with the title: Three-Dimensional Mapping of Shear Wave Velocity in Hu-man Tendon: A Proof of Concept Study
DOI: 10.6084/m9.figshare.14124152.v1
title: Three-Dimensional Mapping of Shear Wave Velocity in Hu-man Tendon: A Proof of Concept Study

description: Ultrasound-based
DOI: 10.5281/zenodo.4284592
title: Dublin Postcode Boundaries - Shane McGuinness

description: This zipped folder contains a shapefile of Dublin postcodes created by Shane Mc Guinness of Trinity College Dublin
DOI: 10.5281/zenodo.4284591
title: Dublin Postcode Boundaries - Shane McGuinness

description: This zipped folder contains a shapefile of Dublin postcodes created by Shane Mc Guinness of Trinity College Dublin
DOI: 10.5281/zenodo.4564248
title: Dublin Postcode Boundaries - autoaddress.ie

description: Derived from Small Area boundaries from DATA.GOV.IE and Eircode Routing Key data and published as open, free and reusable. Further processing: Dublin postcodes extracted 'Co. Dublin' postcodes marked Linked to Dublin Local Authorities
DOI: 10.5281/zenodo.4564256
title: Dublin Postcode Boundaries - autoaddress.ie

description: Derived from Small Area boundaries from DATA.GOV.IE and Eircode Routing Key data and published as open, free and reusable. Further processing: Dublin postcodes extracted Postcodes standardised to same format as BER Public Search by marking 'Co. Dublin' postcodes Linked to Dublin Local Authorities
DOI: 10.6084/m9.figshare.14124266
title: Data supplement 2021-02-09.docx

description: Supplemental Data
DOI: 10.6084/m9.figshare.14124266.v1
title: Data supplement 2021-02-09.docx

description: Supplemental Data
DOI: 10.5281/zenodo.4564293
title: Dublin Boundary

description: A simple boundary of Dublin was extracted from Dublin Postcode Boundaries - Shane McGuinness via GeoPandas - specifically geopandas.GeoDataFrame.dissolve()
DOI: 10.5281/zenodo.4564302
title: Dublin Boundary

description: A simple boundary of Dublin was extracted from Dublin Postcode Boundaries - Shane McGuinness via GeoPandas - specifically geopandas.GeoDataFrame.dissolve()
DOI: 10.5281/zenodo.4564243
title: Introducing a data availability policy for journals at IOP Publishing: Measuring the impact on authors and editorial teams

description: An investigation was undertaken using an automated workflow monitoring tool to understand the impact of this change on authors and the editorial staff. Changes in revised submission processing times and how often manuscripts were returned to the author were measured. This is the anonymised data used for the analysis contained in the paper with the same title to be published in Learned Publishing.
DOI: 10.5281/zenodo.4564242
title: Introducing a data availability policy for journals at IOP Publishing: Measuring the impact on authors and editorial teams

description: An investigation was undertaken using an automated workflow monitoring tool to understand the impact of this change on authors and the editorial staff. Changes in revised submission processing times and how often manuscripts were returned to the author were measured. This is the anonymised data used for the analysis contained in the paper with the same title to be published in Learned Publishing.
DOI: 10.6084/m9.figshare.14102627.v1
title: data and codes

description: Instruction to reproduce the SPLSR model results:<br>Download the zip file to you local computer.Copy and paste the R code block into R studio to run the codes.
DOI: 10.5281/zenodo.4564290
title: ETHNA System Project: Interviews on RRI and Best Practices

description: Summary of Interviews on RRI and Best Practices
DOI: 10.5281/zenodo.4564289
title: ETHNA System Project: Interviews on RRI and Best Practices

description: Summary of Interviews on RRI and Best Practices
DOI: 10.6084/m9.figshare.14115563
title: Pupal developmental time of cold stored Eristalinus aeneus and Eristalis tenax (Diptera, Syrphidae)

description: The present files correspond to the pupal developmental time of different specimens cold stored at 5 ºC for different period of time and at two ages. <br><b>-TE</b> corresponds to <i>Eristalis tenax</i><b>-AE</b> corresponds to E<i>ristalinus aeneus</i>-The different numbers (<b>5</b>, <b>10</b>, <b>15</b>, <b>20</b> and <b>30</b>) correspond to the period that pupae were cold stored at 5ºC<b>-CONT</b> corresponds to the "control" treatments, pupae which were not cold stored. These were kept under controled conditions (25 ºC) until the emergence of the adults.<br>Inside of each file there are three colums:<b>-Treatment </b>corresponds to the age group, the age in which pupae were cold stored. "E" means "Early treatments", these pupae were cold stored when they were two days old. "L" means "Late treatments", these pupae were cold stored at the end of their development, six days old in the case of <i>E. aeneus</i> and seven days old in the case of <i>E. tenax.</i><b>-Gender</b> corresponds to the sex of the resultant adult. "F" means "Female" and "M" means "Male".<b>-Dev. time</b> corresponds to the total developmental time of the pupae (in days) after being cold stored.