cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cct8xvt
title: CCDC 753357: Experimental Crystal Structure Determination

description: Related Article: Jie Yang, Jia-Yin Chen, Yu-Jing Ding, Fan-Sheng Meng, Hui-Min Liu, Xiao-Qing Wang|2022|J.Solid State Chem.|309|122949|doi:10.1016/j.jssc.2022.122949
DOI: 10.5517/ccdc.csd.ccvcmg8
title: CCDC 785740: Experimental Crystal Structure Determination

description: Related Article: Jie Yang, Jia-Yin Chen, Yu-Jing Ding, Fan-Sheng Meng, Hui-Min Liu, Xiao-Qing Wang|2022|J.Solid State Chem.|309|122949|doi:10.1016/j.jssc.2022.122949
DOI: 10.25345/c5q52fd27
title: MassIVE Reanalysis RMSV000000354.3273 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GDI2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5517/ccdc.csd.cc26b3l8
title: CCDC 2035509: Experimental Crystal Structure Determination

description: Related Article: Luann R. D'souza, Sarvesh S. Harmalkar, Nikita N. Harmalkar, Raymond J. Butcher, Ankita S. Pal, Pratik A. Asogekar, Sunder N. Dhuri|2022|J.Mol.Struct.|1257|132572|doi:10.1016/j.molstruc.2022.132572
description: Related Article: Sunder N. Dhuri, Luann D'Souza, R J Butcher, SS Harmalkar, Ankita Pal, Nikita Harmalkar, Pratik Asogekar|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc26pm0k
title: CCDC 2046558: Experimental Crystal Structure Determination

description: Related Article: Di Ke, Lei Zhang, Xiuwen Zhong, Jiaan Shao, Yongping Yu, Wenteng Chen|2022|Org.Lett.|24|1263|doi:10.1021/acs.orglett.1c03833
DOI: 10.25345/c5kd1qk9z
title: MassIVE Reanalysis RMSV000000354.3278 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FABP1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c59z90c5q
title: MassIVE Reanalysis RMSV000000354.3280 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, KIAA0284 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5fq9q580
title: MassIVE Reanalysis RMSV000000354.3283 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZBTB46 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19207206.v1
title: Table S2.xlsx

description: Table S2: Datasets selected for P. vivax.
DOI: 10.6084/m9.figshare.19207206
title: Table S2.xlsx

description: Table S2: Datasets selected for P. vivax.
DOI: 10.15468/43g7-9874
title: GBIF Backbone Taxonomy (2021-11-26)
DOI: 10.25345/c56688k1w
title: MassIVE Reanalysis RMSV000000354.3210 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GLMN [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c52f7jr6n
title: MassIVE Reanalysis RMSV000000354.3281 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, KCNIP2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5xp6v406
title: MassIVE Reanalysis RMSV000000354.3282 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, PHF11 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19207692.v1
title: Table S3.xlsx

description: Table S3::Comparison of nuclear genome features of the two Plasmodium species (Carlton et al. 2008)
DOI: 10.6084/m9.figshare.19207692
title: Table S3.xlsx

description: Table S3::Comparison of nuclear genome features of the two Plasmodium species (Carlton et al. 2008)
DOI: 10.15468/h986-3t05
title: GBIF Backbone Taxonomy (2013-07-01)
DOI: 10.25345/c5sx6496t
title: MassIVE Reanalysis RMSV000000354.3285 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ACADSB [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.15468/1yhg-ae89
title: GBIF Backbone Taxonomy (2016-04-14)
DOI: 10.26036/cnp0000684
title: Lanius collurio WGS sequencing, re-sequencing and assembly

description: Lanius collurio WGS sequencing, re-sequencing and assembly.
DOI: 10.25345/c5p55dh3g
title: MassIVE Reanalysis RMSV000000354.3284 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CHL1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.26036/cnp0001636
title: genome of Hydrogenophaga intermedia ZM11

description: The whole genome sequence of Hydrogenophaga intermedia ZM11
DOI: 10.6084/m9.figshare.19207545
title: Chan_et_al_2022_Data.xlsx

description: Underlying data for Figures 2D, 3C, 3D, 4D and 5D of the paper "Sarcoplasmic reticulum calcium handling in unbranched, immediately post-necrotic fast-twitch <i>mdx</i> fibres is similar to wild-type littermates" by Chan et al. (2022).
DOI: 10.6084/m9.figshare.19207545.v1
title: Chan_et_al_2022_Data.xlsx

description: Underlying data for Figures 2D, 3C, 3D, 4D and 5D of the paper "Sarcoplasmic reticulum calcium handling in unbranched, immediately post-necrotic fast-twitch <i>mdx</i> fibres is similar to wild-type littermates" by Chan et al. (2022).
DOI: 10.26036/cnp0001633
title: genome of Microbacterium paraoxydans ZM08

description: The whole genome sequence of Microbacterium paraoxydans ZM08
DOI: 10.26036/cnp0001702
title: DNA Sequencing of a hybrid maize

description: DNA Sequencing of a hybrid maize
DOI: 10.6084/m9.figshare.19207695
title: Table S4.xlsx

description: Table S4: Number of orthologue pairs present in corresponding strains of the Global dataset.
DOI: 10.6084/m9.figshare.19207695.v1
title: Table S4.xlsx

description: Table S4: Number of orthologue pairs present in corresponding strains of the Global dataset.
DOI: 10.26036/cnp0001654
title: 华南虎和东北虎基因组的组装

description: 两个亚种 (P. t. amoyensis.CU-Tech 和 P. t. altaica.CU-Tech) 老虎的三代基因组组装
DOI: 10.15468/2j77-gj59
title: GBIF Backbone Taxonomy (2012-07-03)
DOI: 10.25345/c5jh3d322
title: MassIVE Reanalysis RMSV000000354.3286 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MTM1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.26036/cnp0001792
title: 胭脂鱼全基因组测序

description: 通过Nanopore测序，对胭脂鱼的全基因组进行从头组装，注释，以及比较基因组学分析。
DOI: 10.26036/cnp0000424
title: Long-term phosphorus fertilization and microbiomes

description: The changes of microbiomes (richness, diversity and functions) under long-term phosphorus fertilization in a winter wheat filed on the Loess Plateau of China.
DOI: 10.25345/c5dr2p89s
title: MassIVE Reanalysis RMSV000000354.3290 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ANKRD26P1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.26036/cnp0001846
title: Genome sequencing of Sea Buckthorn

description: The genome of Hippophae rhamnoides provides Insights into Symbiotic Nitrogen Fixation by Actinomycetes.
DOI: 10.25345/c5901zg5z
title: MassIVE Reanalysis RMSV000000354.3288 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ATP6V0E2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.26036/cnp0001900
title: 榼藤基因组

description: 榼藤的三代测序数据、二代测序数据、Hi-C数据以及RNA测序数据
DOI: 10.26036/cnp0001927
title: Convulvolaceae organelle genomes

description: Convulvolaceae organelle genomes
DOI: 10.26036/cnp0001906
title: 两种虎的小群体数据

description: 群体数据进行call 变异分析
DOI: 10.25345/c55717p0q
title: MassIVE Reanalysis RMSV000000354.3287 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, MOGAT3 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.26036/cnp0001995
title: m6A-seq and RNA-seq in pear

description: 30samples
DOI: 10.6084/m9.figshare.19207704
title: Table S5.xlsx

description: Table S5: Number of in-paralog pairs present in corresponding strains of the Global dataset.
DOI: 10.6084/m9.figshare.19207704.v1
title: Table S5.xlsx

description: Table S5: Number of in-paralog pairs present in corresponding strains of the Global dataset.
DOI: 10.26036/cnp0002086
title: 水稻野生型（日本晴）和Osphr2-1突变体在接种和不接种丛枝菌根真菌时的转录组数据

description: 水稻野生型（日本晴）和Osphr2-1突变体植株接种丛枝菌根真菌 6周和同时期的不接种丛枝菌根真菌的根部转录组数据。
DOI: 10.26036/cnp0002084
title: Long reads assembly of cynomolgus macaque genome

description: we generated a de novo cynomolgus macaque genome assembly(MaFaC) using long-reads sequencing technology(Pacbio,Bionano,HI-C) and multiple scaffolding strategies. Compared to most frequently used NGS cynomolgus macaque reference genome(MF 5.0), in our assembly, N50 reaches 6.03Mbp which improved 75 folds in terms of length, 76119 gaps(137.6 Mbp) were closed and Y chromosome was included. Also, we provided gRNA and wild mutant spectrum of cynomolgus macaque to facilitate its usage as an non-human primate model in Cas9–gRNA gene editing . Furthermore, taking advantage of MaFaC long reads data, we identified much more novel structure variations to be a genetic resources for future studies of primate genetics, evolution and diseases.
DOI: 10.26036/cnp0002097
title: The genome of mangrove plant, Avicennia marina

description: Mangrove plants grow in a complex habitat of coastal intertidal zones with high salinity, hypoxia, etc. Therefore, it is an interesting question how mangroves adapt to the unique intertidal environment. Our findings shed light on the acclimation mechanisms of A. marina to coastal intertidal environments and the evolution of mangrove plants as a whole.
DOI: 10.26036/cnp0002356
title: missing proteins

description: Chromosome-Centric Human Proteome Project (C-HPP) was initiated in 2012, which aims at discovery of all the proteins encoded by human genome in all the individual chromosomes. The primary goal of C-HPP is to ensure whether all the gene annotations in the human genome could be identified at protein level. If some proteins encoded by certain genes are lack of any experimental evidence, they are termed as missing protein (MP). With fast development of proteomic technology, the scale of MPs has been shrinking continuously, and approximately 1,470 MPs have remained to be explored. It is a key question in this field how to discover the remaining MPs with new technology or analytical strategy. The previous reports have unraveled that in aneuploidy cell lines, the changes of chromosomes, more or less, proportionally matched with the abundance alternations in the transcriptome and proteome of the corresponding genes in the aneuploid chromosome(s). Herein, we hypothesize that a stable aneuploid cell line with increasing chromosomes was a useful material that assists the MPs discovery.
DOI: 10.6084/m9.figshare.19207596
title: unidentifiable Data

description: Contains raw data for both the groups
DOI: 10.26036/cnp0002150
title: 16株副猪嗜血杆菌基因组

description: 16株副猪嗜血杆菌基因组完成图ONT测序
DOI: 10.26036/cnp0002308
title: PDGFR/FYN/c-MYC axis confers dual resistance to MEKi and PI3K/mTORi in colorectal cancer

description: Target therapy is a fundamental treatment for colorectal cancer (CRC), while drug resistance dramatically limited the clinical application. Combination of MEKi and PI3K/mTORi was a promising strategy for single agent resistant CRC, however, dual drug resistance was inevitably occur from the long term experience. In this study, we prospectively explore the mechanism underlying dual resistance to MEKi and PI3K/mTORi in CRC. We established dual-polyclonal resistant (DPR) cells to MEKi and PI3K/mTORi and validated compensatory pathways involved in the process of acquired resistance. We performed transcriptome profiling and identified focal adhesion pathways were significantly enriched during dual resistance. c-MYC was significantly upregulated in DPR cells. Knockdown c-MYC arrested cell cycle and downregulated cell cycle related proteins, such as CDK4, CDK8, and cyclin D1. Overexpression of c-MYC significantly promoted proliferation of DPR cells. FYN functioned as upstream target of c-MYC, knockdown of FYN downregulated expression of c-MYC. Knockdown of FYN and family member small molecule inhibitor administration significantly inhibited proliferation of HCT116 and HT29 DPR cells. Co-IP confirmed the directly interaction of FYN and c-MYC. PDGFR downregulated phosphonate of FYN and c-MYC. Our results identified PDGFR/FYN/c-MYC axis mediated dual resistance to MEKi and PI3K/mTORi, which may be applied in explore novel druggable targets for CRC treatment. Moreover, our results provided novel combinational strategy for relapsed CRC, which may improve the survival outcome of patient with CRC.
DOI: 10.6084/m9.figshare.19207743
title: Table S6.xlsx

description: Table S6: Number of co-orthologue pairs present in corresponding strains of the Global dataset.
DOI: 10.6084/m9.figshare.19207743.v1
title: Table S6.xlsx

description: Table S6: Number of co-orthologue pairs present in corresponding strains of the Global dataset.
DOI: 10.26036/cnp0002325
title: Distinct supragingival plaque microbiota composition in cerebral palsy children with caries

description: Children with cerebral palsy (CP) have been shown with a higher prevalence and severity of caries. Although multiple risk factors for caries in CP children have been studied. The function of microorganisms as a necessary condition for caries in CP should be further investigated. The supragingival plaque samples were collected from 55 CP children and 23 non-CP children to detect the supragingival plaque microbiota (SPM) in CP children by 16S rDNA sequencing. The difference of SPM was checked between CP children(CPCS) and non-CP one (NCPCS) with high severity of caries. Also, the SPM was analyzed in CP children with different degrees including caries-free (CPCF), mild to moderate (CPCM), and severe caries (CPCS). We found the top 15 most abundant species in all groups, significant enrichment of Fusobacterium nucleatum, Prevotella intermedia, Campylobacter rectus, Porphyromonas endodontalis, Catonella morbi, Alloprevotella tannerae, Parvimonas micra, Streptobacillus moniliformis, Porphyromonas canoris were found in CPCS. The suspected core cariogenic microbiota of CP children included Prevotella, Alloprevotella, Actinomyces, Catonella and Streptobacillus, while Capnocytophaga and Campylobacter are dental health-associated microbiota of CP children. The core correlation network of SPM in each group was also constructed. Our results showed that there was no significant difference in bacterial diversity between NCPCS and CPCS, but CPCS had a much simpler correlation network than NCPCS. In CP children, lower bacterial diversity in CPCM and CPCF showed simple correlation networks. Overall, the study showed the specific SPM characteristics of CP children with severe caries compared to non-CP control and revealed the correlation network of core SPM in CP children with different severity of caries.
DOI: 10.5281/zenodo.6199789
title: Dataset for Figure 2 in Zoccolotti, De Luca & Marinelli 2021 Brain Sciences_concept paper

description: Dataset for Zoccolotti, P.; De Luca, M.; Marinelli, C.V. Interpreting Developmental Surface Dyslexia within a Comorbidity Perspective. Brain Sci. 2021, 11, 1568. https:// doi.org/10.3390/brainsci11121568 Figure 2. Reading times (in s/word) in the reading of a list of 30 high-frequency words. Data (redrawn from [Pontillo, M.; De Luca, M.; Ellis, A.W.; Marinelli, C.V.; Spinelli, D.; Zoccolotti, P. Failure to learn a new format in developmental dyslexia. Sci. Rep. 2014, 4, 4869.]) refer to a cross-sectional study on a group of 1st to 8th grade typically developing children. Power functions indicate performance at the 10th, 30th, 50th, 70th, and 90th percentiles (curves from top to bottom). Vertical red bars mark the difference between the 90th and the 50th percentile foreach grade; note that the difference becomes quantitatively smaller at progressively higher grades (as indicated by shorter red bars). Horizontal blue bars link the performance corresponding to the 90th percentile with the corresponding performance at the level of the 50th percentile; this indicates the distance (in years) between the two levels of performance. Note that the distance (in years) increases at progressively higher grades (as indicated by longer blue bars).