cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ym3qfu
title: Occurrence Download

description: A dataset containing 34898 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rudbeckia laciniata"
 ]
}

 The dataset includes 34898 records from 529 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038945-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/e6j5-6s70
title: ICARUS Chamber Experiment: Nizkorodov Lab_20210928_Naphthalene/Nitric oxide_Hydroxyl radical_No Seed

description: Goals: Prepare SOA for ROS measurementsSummary: SOA was prepared and then collected for offline analysisOrganization: Nizkorodov Lab Lab Affiliation: University of California, Irvine Chamber: Nizkorodov ChamberExperiment Category: Aerosol formation Oxidant: Hydroxyl radical Reactants: Naphthalene, Nitric oxide Reaction Type: Photooxidation Relative Humidity: 40 Temperature: 21
DOI: 10.15468/dl.4xy6d3
title: Occurrence Download

description: A dataset containing 972 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helianthus annuus",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 972 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038950-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnbg3e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Convolvulus arvensis",
 "Country is Uganda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038952-250717081556266/datasets/export for details.
DOI: 10.15468/dl.s8xdst
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Convolvulus arvensis",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038951-250717081556266/datasets/export for details.
DOI: 10.15468/dl.eefrtr
title: Occurrence Download

description: A dataset containing 2784 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex pseudonatronatus",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2784 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038953-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10697608
title: Inscriptions of Saltuarii

description: This dataset is a geopackage with a list of geocoded Latin inscriptions with mention of saltuarius,-i.

This list was used in the publication:



Visser, RM. 2010 Growing and Felling? Theory and Evidence Related to the Application of Silvicultural Systems in the Roman Period. In:. Moore, A, Taylor, G, Girdwood, P, Harris, E, and Shipley, L (eds.). TRAC 2009: Proceedings of the Nineteenth Annual Theoretical Roman Archaeology Conference, Ann Arbor (USA) and Southampton (UK) 2009. Oxford: Oxbow Books. pp. 11–22. DOI: https://doi.org/10.16995/TRAC2009_11_22.

 

The table consists of the following fields:

 





Field name
Data type
Description


Lit
String
Published as


AntProv
String
Province name in antiquity


Place
String
Modern place name


AntNaam
String
Antique place name


Text
String
Text of the inscription


Lat
Real
Latitude


Long
Real
Longitude
DOI: 10.5281/zenodo.10697607
title: Inscriptions of Saltuarii

description: This dataset is a geopackage with a list of geocoded Latin inscriptions with mention of saltuarius,-i.

This list was used in the publication:



Visser, RM. 2010 Growing and Felling? Theory and Evidence Related to the Application of Silvicultural Systems in the Roman Period. In:. Moore, A, Taylor, G, Girdwood, P, Harris, E, and Shipley, L (eds.). TRAC 2009: Proceedings of the Nineteenth Annual Theoretical Roman Archaeology Conference, Ann Arbor (USA) and Southampton (UK) 2009. Oxford: Oxbow Books. pp. 11–22. DOI: https://doi.org/10.16995/TRAC2009_11_22.

 

The table consists of the following fields:

 





Field name
Data type
Description


Lit
String
Published as


AntProv
String
Province name in antiquity


Place
String
Modern place name


AntNaam
String
Antique place name


Text
String
Text of the inscription


Lat
Real
Latitude


Long
Real
Longitude
DOI: 10.6084/m9.figshare.29635328
title: Supplementary Material for: Nasopharyngeal Carcinoma Presenting with Extensive Osseous Metastases and Intracranial Involvement: A Case Report

description: Introduction: Nasopharyngeal carcinoma (NPC) rarely presents with extensive osseous metastases and intracranial involvement as initial manifestations, posing diagnostic challenges. This report details an unusual case, highlighting its unique clinical course and the importance of considering NPC in atypical metastatic presentations, particularly when an association with Epstein-Barr virus (EBV) is identified.
Case Presentation: An approximately 60-year-old female presented with a progressively enlarging forehead lesion, headaches, and subsequent findings of calvarial lytic lesions with intracranial extension. Comprehensive imaging (MRI, CT, PET/CT) revealed extensive FDG-avid osseous metastases and identified a hypermetabolic primary mass in the nasopharynx. Histopathology of a calvarial lesion confirmed poorly differentiated squamous cell carcinoma, with EBV in situ hybridization positivity, leading to the diagnosis of metastatic EBV-associated NPC. Treatment involved surgical excision of the symptomatic calvarial lesion, palliative radiation to thoracic spine metastases, and systemic therapy with pembrolizumab and denosumab, chosen by the patient over chemotherapy. Despite initial partial symptomatic relief, the patient's condition deteriorated, and she transitioned to hospice care.
Conclusion: This case underscores the diagnostic complexities of NPC with an atypical metastatic pattern. It emphasizes the critical role of comprehensive diagnostic workup, including EBV testing, and multidisciplinary management. While advanced NPC carries a poor prognosis, this report contributes to understanding its diverse presentations and reinforces the need for patient-centered therapeutic decisions.
DOI: 10.6084/m9.figshare.29635328.v1
title: Supplementary Material for: Nasopharyngeal Carcinoma Presenting with Extensive Osseous Metastases and Intracranial Involvement: A Case Report

description: Introduction: Nasopharyngeal carcinoma (NPC) rarely presents with extensive osseous metastases and intracranial involvement as initial manifestations, posing diagnostic challenges. This report details an unusual case, highlighting its unique clinical course and the importance of considering NPC in atypical metastatic presentations, particularly when an association with Epstein-Barr virus (EBV) is identified.
Case Presentation: An approximately 60-year-old female presented with a progressively enlarging forehead lesion, headaches, and subsequent findings of calvarial lytic lesions with intracranial extension. Comprehensive imaging (MRI, CT, PET/CT) revealed extensive FDG-avid osseous metastases and identified a hypermetabolic primary mass in the nasopharynx. Histopathology of a calvarial lesion confirmed poorly differentiated squamous cell carcinoma, with EBV in situ hybridization positivity, leading to the diagnosis of metastatic EBV-associated NPC. Treatment involved surgical excision of the symptomatic calvarial lesion, palliative radiation to thoracic spine metastases, and systemic therapy with pembrolizumab and denosumab, chosen by the patient over chemotherapy. Despite initial partial symptomatic relief, the patient's condition deteriorated, and she transitioned to hospice care.
Conclusion: This case underscores the diagnostic complexities of NPC with an atypical metastatic pattern. It emphasizes the critical role of comprehensive diagnostic workup, including EBV testing, and multidisciplinary management. While advanced NPC carries a poor prognosis, this report contributes to understanding its diverse presentations and reinforces the need for patient-centered therapeutic decisions.
DOI: 10.15468/dl.td2pvn
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Watersipora arcuata",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038954-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29635331
title: Supplementary Material for: Interoceptive Neural Circuits Mediating the Progression from Somatic Diseases to Comorbid Depression

description: Introduction: Somatic diseases comorbid with depression exacerbate the health burden. The interoceptive neural circuit (INC) might mediate brain-body connections. We aimed to assess the causal relationship between somatic diseases, the INC, and depression.

Methods: We conducted Mendelian randomization (MR) analysis to determine the following: 1) the causal effect of four categories of systemic somatic diseases (ulcerative colitis, essential hypertension, chronic pain, and type 2 diabetes) on the INC’s morphology; 2) the causal effect of INC morphology on depression; and 3) the INC’s mediating role between somatic diseases and depression. A replication analysis confirmed the results above in other GWAS datasets. An extended analysis further validated the predictive role of the INC for depression in another systemic disease (asthma).

Results: We found all four systemic somatic diseases resulted in morphological changes in the INC, with shared reduced left ventral diencephalon (L-VDC). The morphological alterations of the INC increased depression risk, with the bilateral ventral thalamus most impacted. The L-VDC volume mediated the relationship between somatic diseases and depression, a finding validated across different datasets. The mediating role of the L-VDC in the relationship between somatic diseases and depression remains present in asthma.

Conclusion: The INC, particularly the L-VDC, plays a crucial role in the pathogenesis of depression and the intersection of somatic diseases. The INC mediates the progression from somatic diseases to comorbid depression, suggesting that interventions targeting the INC may prevent and alleviate the burden of comorbid somatic diseases and depression.
DOI: 10.6084/m9.figshare.29635331.v1
title: Supplementary Material for: Interoceptive Neural Circuits Mediating the Progression from Somatic Diseases to Comorbid Depression

description: Introduction: Somatic diseases comorbid with depression exacerbate the health burden. The interoceptive neural circuit (INC) might mediate brain-body connections. We aimed to assess the causal relationship between somatic diseases, the INC, and depression.

Methods: We conducted Mendelian randomization (MR) analysis to determine the following: 1) the causal effect of four categories of systemic somatic diseases (ulcerative colitis, essential hypertension, chronic pain, and type 2 diabetes) on the INC’s morphology; 2) the causal effect of INC morphology on depression; and 3) the INC’s mediating role between somatic diseases and depression. A replication analysis confirmed the results above in other GWAS datasets. An extended analysis further validated the predictive role of the INC for depression in another systemic disease (asthma).

Results: We found all four systemic somatic diseases resulted in morphological changes in the INC, with shared reduced left ventral diencephalon (L-VDC). The morphological alterations of the INC increased depression risk, with the bilateral ventral thalamus most impacted. The L-VDC volume mediated the relationship between somatic diseases and depression, a finding validated across different datasets. The mediating role of the L-VDC in the relationship between somatic diseases and depression remains present in asthma.

Conclusion: The INC, particularly the L-VDC, plays a crucial role in the pathogenesis of depression and the intersection of somatic diseases. The INC mediates the progression from somatic diseases to comorbid depression, suggesting that interventions targeting the INC may prevent and alleviate the burden of comorbid somatic diseases and depression.
DOI: 10.6084/m9.figshare.27998552
title: Global fire emissions derived from FireMIP models and machine learning approaches

description: This dataset includes CO₂ and BC emissions of fires from FireMIP models outputs and C emissions of fires from ISIMIP models outputs, all revised by multiple machine learning algorithms (MLA).
DOI: 10.6084/m9.figshare.27998552.v2
title: Global fire emissions derived from FireMIP models and machine learning approaches

description: This dataset includes CO₂ and BC emissions of fires from FireMIP models outputs and C emissions of fires from ISIMIP models outputs, all revised by multiple machine learning algorithms (MLA).
DOI: 10.6084/m9.figshare.27998552.v1
title: Global fire emissions derived from FireMIP models and machine learning approaches

description: This dataset includes CO<sub>2</sub> and BC emissions of fires from FireMIP models outputs revised by multiple machine learning algorithms(MLA).
DOI: 10.6084/m9.figshare.29635334
title: Supplementary Material for: HOOK1 gene expression and DNA methylation in obesity and related cardiometabolic traits

description: Background: Accumulation of fat in omental visceral adipose tissue is strongly linked to metabolic diseases. Our recent findings show a distinct and more accessible chromatin landscape of the visceral depot compared to its subcutaneous counterpart. Based on integrated analysis of chromatin accessibility and transcriptomics, we identified previously unrecognized genes linked with obesity. Here, we performed in-depth analyses of one of the candidates, HOOK1, and tested for depot-specific gene expression, correlation with clinical traits and regulatory mechanisms including DNA methylation. 
Methods: We utilised intra-individually paired adipose tissue samples of human omental visceral (OVAT) and subcutaneous adipose tissue (SAT) from our in-house cohort (N=78). Gene expression was measured using RT-qPCR and pyrosequencing was used to determine DNA methylation levels. Data were analysed for differential gene expression and DNA methylation differences between SAT and OVAT, along with correlation analyses with clinical variables related to obesity. Results were validated in adipose tissue samples from 1,618 donors of the Leipzig Obesity Biobank. 
Results: We observed consistently higher HOOK1 gene expression in OVAT compared to SAT and successfully confirmed this effect direction in several validation cohorts. We further identified that HOOK1 gene expression correlated with BMI and hip circumference. We discovered a relationship between DNA methylation of the HOOK1 promoter with clinical variables important for liver function. 
Conclusions: Our data show that HOOK1 gene expression is adipose tissue depot-specific. We observed that gene expression and DNA methylation are correlated to clinical variables of obesity, suggesting that HOOK1 may play a role in obesity and its sequelae
DOI: 10.6084/m9.figshare.29635334.v1
title: Supplementary Material for: HOOK1 gene expression and DNA methylation in obesity and related cardiometabolic traits

description: Background: Accumulation of fat in omental visceral adipose tissue is strongly linked to metabolic diseases. Our recent findings show a distinct and more accessible chromatin landscape of the visceral depot compared to its subcutaneous counterpart. Based on integrated analysis of chromatin accessibility and transcriptomics, we identified previously unrecognized genes linked with obesity. Here, we performed in-depth analyses of one of the candidates, HOOK1, and tested for depot-specific gene expression, correlation with clinical traits and regulatory mechanisms including DNA methylation. 
Methods: We utilised intra-individually paired adipose tissue samples of human omental visceral (OVAT) and subcutaneous adipose tissue (SAT) from our in-house cohort (N=78). Gene expression was measured using RT-qPCR and pyrosequencing was used to determine DNA methylation levels. Data were analysed for differential gene expression and DNA methylation differences between SAT and OVAT, along with correlation analyses with clinical variables related to obesity. Results were validated in adipose tissue samples from 1,618 donors of the Leipzig Obesity Biobank. 
Results: We observed consistently higher HOOK1 gene expression in OVAT compared to SAT and successfully confirmed this effect direction in several validation cohorts. We further identified that HOOK1 gene expression correlated with BMI and hip circumference. We discovered a relationship between DNA methylation of the HOOK1 promoter with clinical variables important for liver function. 
Conclusions: Our data show that HOOK1 gene expression is adipose tissue depot-specific. We observed that gene expression and DNA methylation are correlated to clinical variables of obesity, suggesting that HOOK1 may play a role in obesity and its sequelae
DOI: 10.15468/dl.4pn94y
title: Occurrence Download

description: A dataset containing 2005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helianthus annuus",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2005 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038955-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc95sp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helianthus annuus",
 "Country is Rwanda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038956-250717081556266/datasets/export for details.
DOI: 10.15468/dl.z94368
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Convolvulus arvensis",
 "Country is Uzbekistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 100 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038958-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjyd5w
title: Occurrence Download

description: A dataset containing 24704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Convolvulus arvensis",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24704 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038957-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.sf7m0cgmq
title: The ant genus <em>Hypoponera</em> (Hymenoptera: Formicidae) in Dominican amber

description: Hypoponera is a genus of ponerine ants, well known for its simplified
 morphology, lacking any clear autopomorphy, and its cosmopolitan
 distribution. Here we describe the first Hypoponera in Dominican amber.
 The discovery of Hypoponera electrocacica sp. nov. confirms the
 long-expected presence of the genus in the Caribbean Miocene. The modern
 diversity of Hypoponera in the Greater Antilles now stands at five species
 and two putative subspecies. The dataset here corresponds to reconstructed
 Micro-CT scan data for the Holotype specimen (MNHNSD FOS 18.126) of
 Hypoponera electrocacica sp. nov.
description: # The ant genus *Hypoponera* (Hymenoptera: Formicidae) in Dominican amber
 Dataset DOI:
 [10.5061/dryad.sf7m0cgmq](https://doi.org/10.5061/dryad.sf7m0cgmq) ##
 Description of the data and file structure Supplementary files contain
 MicroCT data for holotype MNHNSD FOS 18.126. We obtained X-ray-based
 computed tomographic (CT) images of the holotype specimen at the New
 Jersey Institute of Technology Otto H. York Center for Environmental
 Engineering and Science, using a Bruker SkyScan 1275 micro-CT scanner. We
 scanned the specimen at a voltage of 25 kV and a current of 175 μA for 400
 ms exposure times averaged over 5 frames per rotation with a voxel size of
 5.96 μm. Z-stacks were generated using NRecon (Micro Photonics, Allentown,
 PA) and reconstructed using 3D Slicer v5.9 (Fedorov et al. 2012).  Data
 correspond to: 3D Segmentation of void space corresponding to the Holotype
 specimen.  Zip file containing all Micro-CT data, including a log of scan
 metadata (003MNHNSD_FOS_18126.log), raw scan data, and a TIFF stack of
 reconstructed scan.
DOI: 10.5061/dryad.2fqz61328
title: When the natal den is not safe: First evidence of infanticide in the northern raccoon (<em>Procyon lotor</em>)

description: Between 8 and 15 May 2025, an adult female northern raccoon (Hermína) with
 three cubs was monitored in the natal cavity using a Reolink camera. The
 data includes video footage taken throughout this period, broken down into
 individual days. Additionally, an Excel file has been uploaded which
 records the most significant events (e.g. arrivals and departures from the
 cavity, cub relocation attempts, and fighting with a foreign raccoon).
description: # When the natal den is not safe: First evidence of infanticide in the
 northern raccoon (*Procyon lotor*) Dataset DOI:
 [10.5061/dryad.2fqz61328](10.5061/dryad.2fqz61328) ## Description of the
 data and file structure An adult female northern raccoon with three cubs
 was monitored in the natal cavity using a reolink camera between May 8 and
 May 15, 2025. The data includes video footage taken throughout the
 monitoring period and is broken down into individual days. In addition, an
 excel file is uploaded where the most important events are recorded
 (arrivals and departures from the cavity, cub relocation attempts, and
 fighting with a foreign raccoon named killer). ### Files and variables
 #### File: Hermina_monitoring.xlsx **Description:** An Excel file
 containing the most important events from the monitored period. #####
 Variables * Column A: Name of the raccoon to which the given row refers (A
 Hermina is a female that has had young. A killer is a strange male that
 has gradually killed and eaten all the young). * Column B: Date the
 raccoon was present in the cavity (M/D/YY) * Column C: Time of departure
 from the cavity * Column D: Date of return to the cavity (M/D/YY) * Column
 E: Time of arrival in the cavity  * Column F: Total time the raccoon was
 outside the cavity (Hours.Minutes) * Column G: Time the killer was in the
 cavity (Hours.Minutes) * Column H: Notes #### File: Hermina.zip
 **Description:** Video recordings from the entire monitoring period. The
 video recordings are organised into folders, each containing the videos
 taken on a specific day during the monitoring period (8–15 May 2025). Each
 subfolder contains all the videos taken on that day. Specific events (e.g.
 departure or entry to the cavity or the presence of the killer) are
 recorded in an Excel file and can be searched for by date and time in the
 Hermina ZIP file. Video recordings are organised by date and time. ##
 Code/software No codes or software were used.