cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26305429.v1
title: A new model of endotracheal tube biofilm identifies combinations of matrix-degrading enzymes and antimicrobials able to eradicate biofilms of pathogens that cause ventilator-associated pneumonia

description: <b>Supplementary Material for '</b><b>A new model of endotracheal tube biofilm identifies combinations of matrix-degrading enzymes and antimicrobials able to eradicate biofilms of pathogens that cause ventilator-associated pneumonia' </b><br><b><i>Abstract: </i></b>Defined as a pneumonia occurring after more than 48 hours of mechanical ventilation via an endotracheal tube, ventilator-associated pneumonia results from biofilm formation on the indwelling tube, seeding the patient’s lower airways with pathogenic microbes such as <i>Pseudomonas aeruginosa, Klebsiella pneumoniae, </i>and <i>Candida albicans.</i> Currently there is a lack of accurate <i>in vitro </i>models of ventilator-associated pneumonia development. This greatly limits our understanding of how the in-host environment alters pathogen physiology and the efficacy of ventilator-associated pneumonia prevention or treatment strategies. Here, we showcase a reproducible model that simulates biofilm formation of these pathogens in a host-mimicking environment, and demonstrate that the biofilm matrix produced differs from that observed in standard laboratory growth medium. In our model, pathogens are grown on endotracheal tube segments in the presence of a novel synthetic ventilator airway mucus (SVAM) medium that simulates the in-host environment. Matrix-degrading enzymes and cryo-SEM were employed to characterise the system in terms of biofilm matrix composition and structure, as compared to standard laboratory growth medium. As seen in patients, the biofilms of ventilator-associated pneumonia pathogens in our model either required very high concentrations of antimicrobials for eradication, or could not be eradicated. However, combining matrix-degrading enzymes with antimicrobials greatly improved biofilm eradication of all pathogens. Our <i>in vitro</i> endotracheal tube (IVETT) model informs on fundamental microbiology in the ventilator-associated pneumonia context, and has broad applicability as a screening platform for antibiofilm measures including the use of matrix-degrading enzymes as antimicrobial adjuvants.
DOI: 10.15468/dl.dcsdhw
title: Occurrence Download

description: A dataset containing 401 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Cymbirhynchus macrorhynchos (Gmelin, 1788)"
 ]
}

 The dataset includes 401 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043325-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26412718
title: Latitudinal, elevational, and phenological shifts for North American birds

description: Data and code supporting Neate-Clegg et al., Advances in breeding phenology outpace latitudinal and elevational shifts for North American birds tracking temperature.
DOI: 10.5281/zenodo.12772872
title: Responses of ionospheric radial currents (IRC) to the geomagnetic storm on 10 May 2024
DOI: 10.5281/zenodo.12772871
title: Extreme Responses of the ionospheric radial currents to the main phase of the super geomagnetic storm on 10 May 2024
DOI: 10.6084/m9.figshare.26412766
title: Supplementary_table_S1.xlsx

description: dataset
DOI: 10.6084/m9.figshare.26412766.v1
title: Supplementary_table_S1.xlsx

description: dataset
DOI: 10.6084/m9.figshare.26412763
title: Supplementary_table_S2.xlsx

description: dataset
DOI: 10.6084/m9.figshare.26412763.v1
title: Supplementary_table_S2.xlsx

description: dataset
DOI: 10.15468/dl.zyzqf6
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquitoes (Culicidae) of Ireland"
 ]
}

 The dataset includes 253 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043330-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq5dgn
title: Occurrence Download

description: A dataset containing 77321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Centropus bengalensis (Gmelin, 1788)"
 ]
}

 The dataset includes 77321 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043329-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26412769
title: Supplementary_table_S3.xlsx

description: dataset
DOI: 10.6084/m9.figshare.26412769.v1
title: Supplementary_table_S3.xlsx

description: dataset
DOI: 10.15468/dl.zsqmtj
title: Occurrence Download

description: A dataset containing 844 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arpophyllum giganteum Hartw. ex Lindl."
 ]
}

 The dataset includes 844 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043331-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/9074038
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.15468/dl.nad6vy
title: Occurrence Download

description: A dataset containing 1480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Gypsophila crassa (Sharpe, 1888)"
 ]
}

 The dataset includes 1480 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043335-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83qbf3
title: Occurrence Download

description: A dataset containing 6017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Orthetrum pruinosum (Burmeister, 1839)"
 ]
}

 The dataset includes 6017 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043334-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8upxsb
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Hydrornis guajanus (Müller & Pls, 1776)"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043328-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89hvbe
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cypripedium guttatum Sw."
 ]
}

 The dataset includes 167 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043336-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2t3aeq
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Cymbirhynchus macrorhynchos (Gmelin, 1788)"
 ]
}

 The dataset's 4 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043327-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g58ea6
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinocypha anisoptera Selys, 1879"
 ]
}

 The dataset includes 51 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043339-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.av567x
title: Occurrence Download

description: A dataset containing 28799 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SOMBASE BIOCONSTRUCTORS"
 ]
}

 The dataset includes 28799 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043338-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/bulpgp
title: Wpływ powłok HfO2 i Al2O3 na dynamikę sieci nanodrutów GaN. Analiza statystyczna wyników spektroskopii Ramana

description: Zamieszczone wyniki dotyczą badań dotyczących wpływu powłok HfO2 i Al2O3 na dynamikę sieci nanodrutów GaN. Nanodruty GaN były krystalizowane na podłożu krzemowym techniką epitaksji z wiązek molekularnych z plazmowym źródłem azotu (PAMBE). Powłoki tlenku hafnu oraz aluminium zostały naniesione metodą osadzania cienkich warstw (ALD). Ponadto została wykonana analiza statystyczna wyników spektroskopii Ramana. W ramach badań zaproponowano wykorzystanie metod wnioskowania statystycznego w celu zweryfikowania występowania istotnych statystycznie różnic w częstościach wzbudzeń fononowych wyznaczanych na podstawie pomiarów widm Ramana. Pomiary ramanowskie i analizę danych przeprowadzono dla serii próbek nanodrutów typu rdzeń GaN - powłoka Al2O3 lub HfO2, otrzymanych na podłożu krzemowym.Zmierzone częstości wzbudzeń fononowych, w szczególności modu GaN E2high, poddano analizie, wykazując istotne statystycznie różnice pomiędzy próbkami o różnych grubościach powłok. Potwierdzono ich wpływ na właściwości strukturalne i dynamikę sieci krystalicznej nanodrutów. Pokazano również, że wykorzystanie podejścia statystycznego w analizie wyników ramanowskich istotnie zwiększa ich wiarygodność.Opis wyników znajduje się w pliku readme.txt.
DOI: 10.5281/zenodo.13142149
title: Simulation outputs from the Inkomati-Usuthu case study of the NEXOGENESIS project

description: System Dynamic Model outputs for the Inkomati Case Study. For 2 climate and 2 socio-economic scenarios, with and without policy implentation. 8 datasets in total
DOI: 10.5281/zenodo.13142305
title: Simulation outputs from the Inkomati-Usuthu case study of the NEXOGENESIS project

description: System Dynamic Model outputs for the Inkomati Case Study. For 2 climate and 2 socio-economic scenarios, with and without policy implentation. 8 datasets in total
DOI: 10.25345/c51c1ts83
title: MassIVE MSV000095489 - Pilot Study on Differential Urine Proteomic Profile of Subjects with Community Acquired Acute Kidney Injury Who Recover Versus Those Who Do Not Recover Completely at 4 months after Hospital Discharge
title: Community acquired acute kidney injury (CAAKI) is a sudden structural damage and loss of kidney function in otherwise healthy individuals outside of hospital settings having high morbidity and mortality rates worldwide. Long-term sequelae of AKI involve an associated risk of progression to chronic kidney disease (CKD). Serum creatinine (SCr) the currently used clinical parameter for diagnosing AKI varies greatly with age, gender, diet and muscle mass. In the present study, we investigated the difference in urinary proteomic profile of subjects that recovered (R) and incompletely recovered (IR) from CAAKI, 4 months after hospital discharge. This study helped in identifying potential proteins and associated pathways that are either upregulated or downregulated at the time of hospital discharge in incompletely recovered CAAKI patients that can be further investigated to check for their exact role in the disease progression or repair.
DOI: 10.5281/zenodo.12731841
title: Image Data for: Bleaching protection and axial sectioning in fluorescence nanoscopy through two-photon activation at 515 nm

description: Image data of publication
DOI: 10.5281/zenodo.12731842
title: Image Data for: Bleaching protection and axial sectioning in fluorescence nanoscopy through two-photon activation at 515 nm

description: Image data of publication
DOI: 10.5281/zenodo.1312842
title: Lexibank/Bowernpny: Computational Phylogenetics And The Internal Structure Of Pama-Nyungan: Dataset

description: Cite the source dataset as


Bowern, Claire, & Atkinson, Quentin. (2012). Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset [Data set]. Language. http://doi.org/10.1353/lan.2012.0081
DOI: 10.5281/zenodo.1312841
title: CLDF dataset derived from Bowern and Atkinson's "Internal Structure of Pama-Nyungan" from 2012

description: Cite the source of the dataset as:




Bowern, Claire, & Atkinson, Quentin. (2012). Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset [Data set]. Language. http://doi.org/10.1353/lan.2012.0081
DOI: 10.5281/zenodo.13143103
title: CLDF dataset derived from Bowern and Atkinson's "Internal Structure of Pama-Nyungan" from 2012

description: Cite the source of the dataset as:




Bowern, Claire, & Atkinson, Quentin. (2012). Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset [Data set]. Language. http://doi.org/10.1353/lan.2012.0081
DOI: 10.5281/zenodo.2634734
title: lexibank/bowernpny: Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset

description: Cite the source dataset as


Bowern, Claire, & Atkinson, Quentin. (2012). Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset [Data set]. Language. http://doi.org/10.1353/lan.2012.0081
DOI: 10.5281/zenodo.5115983
title: CLDF dataset derived from Bowern and Atkinson's "Internal Structure of Pama-Nyungan" from 2012

description: Cite the source of the dataset as: Bowern, Claire, & Atkinson, Quentin. (2012). Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset [Data set]. Language. http://doi.org/10.1353/lan.2012.0081
DOI: 10.5281/zenodo.5119341
title: CLDF dataset derived from Bowern and Atkinson's "Internal Structure of Pama-Nyungan" from 2012

description: Cite the source of the dataset as: Bowern, Claire, & Atkinson, Quentin. (2012). Computational Phylogenetics and the Internal Structure of Pama-Nyungan: Dataset [Data set]. Language. http://doi.org/10.1353/lan.2012.0081
DOI: 10.15468/dl.ez6zj9
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arnebia guttata Bunge"
 ]
}

 The dataset includes 222 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043341-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5wm14540
title: MassIVE MSV000095490 - Size Exclusion Chromatography Based Proteomic and Degradomic Profiling of Inflammasome-Activated, Murine Bone Marrow-Derived Dendritic Cells
title: This proteomic dataset explores the formation of protein complexes during inflammasome activation in bone marrow-derived dendritic cells (BMDCs) from gasdermin D-deficient mice. The study employs size exclusion chromatography (SEC) linked with mass spectrometry-based proteomics to provide a global overview of protein complexes and their dynamics, with a particular focus on proteolytic enzymes and truncated proteins in higher molecular weight complexes. BMDCs were cultured and differentiated using GM-CSF, then primed with LPS and treated with either nigericin or Val-boroPro (Talabostat). Proteins were separated by SEC, and fractions were labelled with tandem mass tags (TMT). The labelled fractions were analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Raw mass spectrometry data were processed using the FragPipe pipeline (v20.0) with semi-specific tryptic cleavage specificity allowing one missed cleavage. Fixed modifications included carbamidomethylation at cysteines and a TMT mass delta of 229.16293 at lysines, while N-terminal acetylation and N-terminal TMT mass delta were set as variable modifications. Normalization across SEC fractions was performed using the reference channel in R (v4.1.0) within Rstudio, followed by further analysis of the processed data.
DOI: 10.15468/dl.rpc5cy
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydrornis guajanus (Müller & Pls, 1776)"
 ]
}

 The dataset includes 152 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043342-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13142955
title: Host Data from: [O II] as an Effective Indicator of the Dependence Between the Standardised Luminosities of Type Ia Supernovae and the Properties of their Host Galaxies

description: Spectral properties of the Foundation Host Galaxies presented in the paper: [O II] as an Effective Indicator of the Dependence Between the Standardised Luminosities of Type Ia Supernovae and the Properties of their Host Galaxies.

Spectra were taken using the WiFeS instrument on the ANU 2.3m Telescope.
DOI: 10.5281/zenodo.13142956
title: Host Data from: [O II] as an Effective Indicator of the Dependence Between the Standardised Luminosities of Type Ia Supernovae and the Properties of their Host Galaxies

description: Spectral properties of the Foundation Host Galaxies presented in the paper: [O II] as an Effective Indicator of the Dependence Between the Standardised Luminosities of Type Ia Supernovae and the Properties of their Host Galaxies.

Spectra were taken using the WiFeS instrument on the ANU 2.3m Telescope.
DOI: 10.15468/dl.tfy6bz
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arnebia euchroma (Royle ex Benth.) I.M.Johnst."
 ]
}

 The dataset includes 26 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043343-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.1295833
title: CLDF dataset derived from Greenhill and Gray's "Bantu Basic Vocabulary Database" from 2015

description: Cite the source dataset as Simon Greenhill and Russell Gray, 2015. Bantu Basic Vocabulary Database
DOI: 10.5281/zenodo.13143126
title: CLDF dataset derived from Greenhill and Gray's "Bantu Basic Vocabulary Database" from 2015

description: Cite the source of the dataset as:




Simon Greenhill and Russell Gray, 2015. Bantu Basic Vocabulary Database
DOI: 10.5281/zenodo.2630833
title: CLDF dataset derived from Greenhill and Gray's "Bantu Basic Vocabulary Database" from 2015

description: Cite the source dataset as Simon Greenhill and Russell Gray, 2015. Bantu Basic Vocabulary Database
DOI: 10.5281/zenodo.3265696
title: CLDF dataset derived from Greenhill and Gray's "Bantu Basic Vocabulary Database" from 2015

description: Cite the source dataset as Simon Greenhill and Russell Gray, 2015. Bantu Basic Vocabulary Database
DOI: 10.5281/zenodo.5115982
title: CLDF dataset derived from Greenhill and Gray's "Bantu Basic Vocabulary Database" from 2015

description: Cite the source of the dataset as: Simon Greenhill and Russell Gray, 2015. Bantu Basic Vocabulary Database
DOI: 10.5281/zenodo.1295832
title: CLDF dataset derived from Greenhill and Gray's "Bantu Basic Vocabulary Database" from 2015

description: Cite the source of the dataset as:




Simon Greenhill and Russell Gray, 2015. Bantu Basic Vocabulary Database
DOI: 10.15468/dl.wan5c5
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Hydrophasianus chirurgus (Scopoli, 1786)"
 ]
}

 The dataset includes 140 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043344-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t2cjp4
title: Occurrence Download

description: A dataset containing 213430 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Parus cinereus Vieillot, 1818"
 ]
}

 The dataset includes 213430 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043340-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5121540
title: CLDF dataset derived from Hale's "Wordlists in Selected Languages of Nepal" from 1973

description: Cite the source of the dataset as: Hale, Austin (1973): Clause, sentences, and discourse patterns in selected languages of Nepal. Kathmandu: Institute of Nepal and Asiatic Studies.
DOI: 10.5281/zenodo.13143140
title: CLDF dataset derived from Hale's "Wordlists in Selected Languages of Nepal" from 1973

description: Cite the source of the dataset as:




Hale, Austin (1973): Clause, sentences, and discourse patterns in selected languages of Nepal. Kathmandu: Institute of Nepal and Asiatic Studies.
DOI: 10.5281/zenodo.2633936
title: CLDF dataset derived from Hale's "Wordlists in Selected Languages of Nepal" from 1973

description: Cite the source of the dataset as:




Hale, Austin (1973): Clause, sentences, and discourse patterns in selected languages of Nepal. Kathmandu: Institute of Nepal and Asiatic Studies.
DOI: 10.5281/zenodo.2633937
title: CLDF dataset derived from Hale's "Wordlists in Selected Languages of Nepal" from 1973

description: Cite the source dataset as Hale, Austin. 1973. Clause, sentence, and discourse patterns in selected languages of Nepal IV: word lists. SIL and Tribhuvan University Press
DOI: 10.5281/zenodo.3268446
title: lexibank/halenepal: A. Hale's «Selected Languages of Nepal», 1973

description: Cite the source dataset as Hale, Austin. 1973. Clause, sentence, and discourse patterns in selected languages of Nepal IV: word lists. SIL and Tribhuvan University Press
DOI: 10.15468/dl.fwm5mg
title: Occurrence Download

description: A dataset containing 6079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.5758 36.87071,-3.38671 36.87071,-3.38671 37.02908,-3.5758 37.02908,-3.5758 36.87071))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1000-2004"
 ]
}

 The dataset includes 6079 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043346-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.