cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24982555.v1
title: Supplementary Materials: Supplementary Tables from Uncovering the mosaic evolution of the carnivoran skeletal system

description: The diversity of vertebrate skeletons is often attributed to adaptations to distinct ecological factors such as diet, locomotion, and sensory environment. Although the adaptive evolution of skull, appendicular skeleton, and vertebral column is well studied in vertebrates, comprehensive investigations of all skeletal components simultaneously are rarely performed. Consequently, we know little of how modes of evolution differ among skeletal components. Here, we tested if ecological and phylogenetic effects led to distinct modes of evolution among the cranial, appendicular and vertebral regions in extant carnivoran skeletons. Using multivariate evolutionary models, we found mosaic evolution in which only the mandible, hindlimb and posterior (i.e. last thoracic and lumbar) vertebrae showed evidence of adaptation towards ecological regimes whereas the remaining skeletal components reflect clade-specific evolutionary shifts. We hypothesize that the decoupled evolution of individual skeletal components may have led to the origination of distinct adaptive zones and morphologies among extant carnivoran families that reflect phylogenetic hierarchies. Overall, our work highlights the importance of examining multiple skeletal components simultaneously in ecomorphological analyses. Ongoing work integrating the fossil and paleoenvironmental record will further clarify deep-time drivers that govern carnivoran diversity we see today and reveal the complexity of evolutionary processes in multicomponent systems.
DOI: 10.6084/m9.figshare.8081582.v1
title: ReN2 experiment#2 3.5 GPa

description: Single-crystal XRD data set for rhenium nitrides collected in a diamond anvil cell at 3.5 GPa at GSECARS (APS, USA)
DOI: 10.15131/shef.data.28645670.v1
title: An Arts-Based Inquiry into Affective Experiences with Music: Priming Experiment Data

description: This dataset contains the data from a priming experiment, aimed at investigating whether listening to different music induces shifts in one's self-construal. In this study, participants completed a pre-test questionnaire regarding their self-construal. Thereafter, participants were randomly assigned to one of three music conditions: Chinese music, Western music, or control condition (no music). Participants then completed the post-test questionnaire regarding their self-construal. Participants also completed a demographic questionnaire about their age, gender, disability, nationality, race/ethnicity, education level, musical identity, and years of musical training.This study received ethical approval by the University of Sheffield's ethics review procedure, as administered by the Department of Music (application reference #061030).
DOI: 10.17632/xrbtd74pfj
title: Image Dataset of Clinical Urine Test Results on Petri Dishes

description: This dataset contains 1500 images of clinical urine cultures in agar plates. The data is structured in three subdirectories corresponding to each exam result: Positive, Negative, and Uncertain. Each subdirectory contains image files in jpeg format and annotations in XLSX files about the respective result of the exams. There are 498 images in the Positive folder, 500 were classified as Negative and 502 as Uncertain.
A specific image acquisition system was developed to support data collection following a standardized process. The system is composed of a tailored hardware chamber integrated with a smartphone providing the camera and a software application. The chamber consists of a white acrylic cubic box made to set a standard environment for the photos, with appropriate conditions of positioning and lighting. The hardware chamber technical drawing is provided in the methods folder. The camera used is embedded in a Samsung Galaxy Note 9 mobile phone with a 4: 3 sensor ratio and 12-megapixel. (The images on the dataset have a 3024-by-3024 pixels resolution each, which is the original camera output resolution considering a square cut to convert the sensor's ratio from 4:3 to 1:1). A mobile software application, using React Native as front-end technology and Firebase as back-end-as-a-service, was developed to support image acquisition.
DOI: 10.6084/m9.figshare.12148359.v1
title: EEG resting state power before, during and after 60 days of bed rest

description: <b>Studies</b>:As part of two ESA sponsored head-down bed rest (HDBR) studies (RSL and COCKTAIL), we acquired resting state EEG data once before, three times during, and once after 60 days of HDBR to identify the time course of electrocortical activity in response to prolonged bed rest with and without exercise as acountermeasure (RSL) and with and without antioxidant supplementation (COCKTAIL).<br>RSL: We performed 3-minute eyes-closed resting state EEG collections seven days prior to bed rest (BDC-7), on the second day of HDBR (HDBR2), on the 28th day of HDBR (HDBR28), on the 56th day of HDBR (HDBR56), and after 11 days of recovery (R+10).On the first day of bed rest, the participants were randomly assigned to either an exercise group (RSL-TRAIN, N = 12) that performed a high-intensity interval training during HDBR or a control group (RSL-CTRL, N = 11) that did not perform any physical training.<br><br>COCKTAIL: We performed 3-minute eyes-closed resting state EEG collections eight days prior to bed rest (BDC-8), on the 7th day of HDBR (HDBR7), on the 31st day of HDBR (HDBR31), on the 60th day of HDBR (HDBR60), and after 8 days of recovery (R+8).On the first day of HDBR, the subjects were randomly allocated to either a treatment group (COCKTAIL-TREAT, N = 10) receiving an antioxidant-cocktail (consisting of 741 mg of a bioactive polyphenol compound mix, 2.1 g omega-3 fatty acids, and 138 mg vitamin E coupled with 80 μg of selenium) or a control group (COCKTAIL-CTRL, N = 10) receiving no supplement.<br><br><b>Data Files:</b><br>Excel files contain mean absolute power values calculated for each electrode for all participants and measurement days.<br>Zip files contain folders for each subject and measurement day. Within each folder, there are txt files. These txt files include all artifact-free 4096-ms resting state EEG epochs which can be used for eLORETA analysis.<br><br>
DOI: 10.6084/m9.figshare.19130036.v1
title: working_data.Rdata

description: data and information that were used in study
DOI: 10.6084/m9.figshare.21617382.v3
title: Fagopyrum genome assembly

description: The genome assembly sequence of <em>Fagopyrum esculentum </em>and <em>Fagopyrum tartaricum</em>.
DOI: 10.6084/m9.figshare.23402360.v4
title: 14,922 SNP markers and genotypes used for genomewide prediction in chile peppers

description: Genotype data (numeric and hapmap) of the 204 chile pepper genotypes for 14,922 single nucleotide polymorphism (SNP) markers used for genomic prediction.
DOI: 10.6084/m9.figshare.26675072.v1
title: Additional file 3 of Links between the three-dimensional movements of whale sharks (Rhincodon typus) and the bio-physical environment off a coral reef

description: Additional file 3. Interactive 3D-UD of whale shark WS51_2018.
DOI: 10.6084/m9.figshare.27050540.v1
title: Supplementary Material from Polarised light detection in bumblebees varies with light intensity and is mediated by both the ocelli and compound eyes

description: Test3.txt
DOI: 10.6084/m9.figshare.28204409.v6
title: Supplementary table, figures and code File

description: Microbiome dysbiosis has been linked to creating a favorable environment for cancer development by disrupting immune responses, altering hormone metabolism, and affecting cell cycle regulation and apoptosis. Notably, studies have explored the connection between the gut microbiome and EC. Our study employs a Mendelian randomization (MR) approach, utilizing genetic variants as instrumental variables, to investigate the causal associations between gut microbiota, plasma metabolites, and EC. Our findings revealed 16 mediation pathways involving 4 microbial species and 14 plasma metabolites, highlighting potential connections between gut microbiota and EC, with some metabolites such as Carboxyethyl-GABA and Glycodeoxycholate 3-sulfate mediating the effects of gut microbiota on EC.Our research provides novel insights into the causal relationship between the gut microbiota, plasma metabolites, and EC, indicating potential targets for intervention in the disease. We are convinced that these discoveries hold substantial relevance for the domain of gynecological oncology research and clinical practice, potentially exerting a significant impact on the prevention and therapeutic strategies for EC.
DOI: 10.6084/m9.figshare.28801394.v1
title: Ethics and Integrity in Forensic Science- A Crime Scene Investigator’s Perspective.docx

description: This article explores the ethical responsibilities of forensic scientists, particularly crime scene investigators (CSIs), through the lens of John Stuart Mill’s utilitarianism. It discusses how ethical principles guide decision-making in forensic investigations and highlights the impact of artificial intelligence (AI) on forensic practices, especially in third-world countries. The paper examines the advantages and limitations of AI in forensic science and emphasizes the importance of maintaining integrity, objectivity, and transparency to ensure justice is upheld in the legal system.
DOI: 10.6084/m9.figshare.5048479.v1
title: Supplementary Material for: Quantitative Proteomics Analysis of Ischemia/Reperfusion Injury-Modulated Proteins in Cardiac Microvascular Endothelial Cells and the Protective Role of Tongxinluo

description: <i>Background:</i> The protection of endothelial cells (ECs) against reperfusion injury has received little attention. In this study, we used Tandem Mass Tag (TMT) labeling proteomics to investigate the modulated proteins in an <i>in vitro</i> model of cardiac microvascular endothelial cells (CMECs) subjected to ischemia/reperfusion (I/R) injury and their alteration by traditional Chinese medicine Tongxinluo (TXL). <i>Methods:</i> Human CMECs were subjected to 2 h of hypoxia followed by 2 h of reoxygenation with different concentrations of TXL Protein expression profiles of CMECs were determined using tandem mass spectrometry. We evaluated several proteins with altered expression in I/R injury and summarized some reported proteins related to I/R injury. <i>Results:</i> TXL dose-dependently decreased CMEC apoptosis, and the optimal concentration was 800 µg/mL. I/R significantly altered proteins in CMECs, and 30 different proteins were detected between a normal group and a hypoxia and serum deprivation group. In I/R injury, TXL treatment up-regulated 6 types of proteins including acyl-coenzyme A synthetase ACSM2B mitochondrial (ACSM2B), cyclin-dependent kinase inhibitor 1B (CDKN1B), heme oxygenase 1 (HMOX1), transcription factor SOX-17 (SOX17), sequestosome-1 isoform 1 (SQSTM1), and TBC1 domain family member 10B (TBC1D10B). Also, TXL down-regulated 5 proteins including angiopoietin-2 isoform c precursor (ANGPT2), cytochrome c oxidase assembly factor 5 (COA5), connective tissue growth factor precursor (CTGF), cathepsin L1 isoform 2 (CTSL), and eukaryotic elongation factor 2 kinase (LOC101930123). These types of proteins mainly had vital functions, including cell proliferation, stress response, and regulation of metabolic process. <i>Conclusions:</i> The study presented differential proteins upon I/R injury through a proteomic analysis. TXL modulated the expression of proteins in CMECs and has a protective role in response to I/R.
DOI: 10.17632/3xrwsp5893
title: Ground-level, hyperspectral and thermal remote data from wheat genotypes grow under various combinations of water and nitrogen availability

description: In this data we provide different agronomic variables and sensor readings (reflectance spectra and canopy temperature) from an agricultural crop rotation under Mediterranean conditions. The data were obtained in Central Spain after collecting plant samples in a field experiment during two growing seasons: 2018-2020 and 2019-2021. These variables represent the crop response of two wheat (Triticum aestivum L.) genotypes to different precedent crops (legume versus non-legume), nitrogen fertilization and water levels, as well as the readings of leaf-clip and proximal sensors in different growth stages.
+ Value of the data:
Data relating agronomic and sensor information from different wheat genotypes under nitrogen and water interactions will be useful for understanding crop performance and optimizing irrigation and nitrogen fertilization. 
The present dataset could help researchers and farmers to identify suitable genotypes and their responses to nitrogen and water stress.
+ Detailed description:
The file ‘Grain yield, GNC and N output of wheat.xlsx’ contains the specific year in which each sample was taken is indicated in the database, the dry biomass (kg ha-1), carbon and nitrogen concentration (% C and %N), C/N ratio and N uptake (kg N ha-1) measured in wheat at flowering in the different treatments every year (Wheat Biomass.xlsx). In addition, the dataset contains the wheat grain yield (kg ha-1), % C, % N, C/N ratio and N output (kg N ha-1) at harvest in the two years were recorded. 
The files ‘Dualex readings.xlsx’ and ‘Greeseeker readings.xlsx’ contains the chlorophyll (Chl), flavonoid (Flav), anthocyanin (Anth) content and the nitrogen balance index (NBI, calculated as the ratio Chl/Flav) measured with the leaf-clip sensor Dualex®, and the normalized difference vegetation index (NDVI) taken with the proximal sensor GreenSeeker® at three different growth stages (GS) for all genotypes and treatments.
The file ‘Reflectance of wheat.xlsx’ contains the hyperspectral wheat reflectance measured at five GS in all treatments.
The file ‘Thermal data of wheat.xlsx’ contains the canopy temperature acquired at three GS in all treatments. Additionally, dry and wet bare soil temperature was measured as well as the air temperature. 
Suplementary material for the article is also available as a pdf file.
DOI: 10.6084/m9.figshare.21770624.v1
title: Global fire CO2 emissions 2000-2021

description: We use MOPITT satellite retrievals of CO and a global atmospheric inversion system to estimate global monthly fire CO2 emissions at a horizontal resolution of 3.75° × 1.9°.
DOI: 10.6084/m9.figshare.25326322.v2
title: Data collected from each cat in the sample

description: The cat identification, sex [male (1) and female (2)], age (yrs), weight (kgs), neurotic personality score (shown as a percentage), number of GPS points (total after filtering), road density (m), presence of a major road, participation date, and the 100% MCP, 95% KDE, and 50% KDE home ranges (ha) for each cat sampled in the study. All cats were desexed. Personality scores were obtained from a survey based on the "Feline Five" (Litchfield et al., 2017). Bold cats are considered to have a low neurotic score. Road density was estimated by summing road lengths within a fixed boundary, centred on each cat's mean latitude and longitude coordinates. The variable "major road" indicated the presence (1) or absence (0) of a major road within the boundary. Roads were labelled as "major" based on traffic rates. The ordinal date represents the first day of GPS data collection.
DOI: 10.6084/m9.figshare.9894398.v1
title: Figshare File 1

description: Calculations used to derive the amount of 13C-labeled leucine incorporated into cells. File is in .docx format.
DOI: 10.6084/m9.figshare.3560892.v1
title: Appendix A. Detailed supplementary information on the methods describing data collection, transformation and analysis, including a model justification table, lists of plant and pollinator species, a floral complexity scoring table, goodness-of-fit indices table, path diagrams (model B and C) and bivariate correlation plots.

description: Detailed supplementary information on the methods describing data collection, transformation and analysis, including a model justification table, lists of plant and pollinator species, a floral complexity scoring table, goodness-of-fit indices table, path diagrams (model B and C) and bivariate correlation plots.
DOI: 10.6084/m9.figshare.5125684.v1
title: Supplementary Material for: Current Concepts in the Diagnosis and Classification of Renal Dysfunction in Cirrhosis

description: <b><i>Background:</i></b> Renal dysfunction is one of the most common complications of cirrhosis with high morbidity and mortality. <b><i>Summary:</i></b> In subjects with cirrhosis, renal dysfunction can present either as a direct consequence of cirrhosis (e.g. hepatorenal syndrome type I and type II) or secondary to etiologies other than cirrhosis (chronic kidney disease due to diabetic nephropathy, prerenal azotemia), or patients with cirrhosis may have renal dysfunction resulting directly from cirrhosis and an underlying chronic kidney disease. <b><i>Key Messages:</i></b> Given the challenges in the differential diagnosis of renal dysfunction and insufficient accuracy of serum creatinine and creatinine-based glomerular filtration rate estimating equations in cirrhosis, there is an urgent need for more accurate biomarkers of renal dysfunction in this population. This review will discuss novel concepts for the diagnosis and classification of renal dysfunction in cirrhosis to overcome at least some of the diagnostic and therapeutic challenges. Additionally, a new classification will be proposed for renal dysfunction in cirrhosis.
DOI: 10.6084/m9.figshare.5234068.v2
title: American Rivers Dam Removal Database

description: American Rivers’ Dam Removal Database includes all dam removals in the United States (of which we have been made aware) in which a significant portion of the dam has been removed for the full height of the dam, such that ecological function, natural river flow and fish passage can be restored at the site. This database is revised and updated annually with information provided by contributors across the country. The database may be used by anyone provided that citation is given to American Rivers and the DOI link is included.
DOI: 10.17632/hh6x2fjkvd
title: Effects of H3.3G34V Mutation on Genomic H3K36 and H3K27 Methylation Patterns in Isogenic Pediatric Glioma Cell Lines
DOI: 10.6084/m9.figshare.21995555.v1
title: Insect data.xlsx

description: Insects collected in a wetlands using malaise traps
DOI: 10.6084/m9.figshare.22774967.v2
title: TiP

description: The replication package of TiP.
DOI: 10.6084/m9.figshare.23573409.v1
title: SunSolve_Reflectance_EQE_J

description: Factors influencing photon management in a silicon solar cell were investigated. Elaborations: JSC : short-circuit current density, JR−f : loss in current density due to front reflectance, JR−esc: loss in current density due to escape reflectance, Jloss−f : loss in current density (absorption) at the front side, and Jloss−r : loss in current density (absorption) at the rear side.
DOI: 10.6084/m9.figshare.24071256.v1
title: China's provincial CPU index

description: CPU dataset of 32 provinces in China (excluding data from Hong Kong, Macao, andTaiwan; 2000-2022), including monthly and annual indices (“China's provincial climate policy uncertainty index,2000-2022")
DOI: 10.17632/zysvgmxcyz
title: Comprehensive Dataset on Ripening Stages of Strawberries and Avocados: From Unripe to Rotten

description: This dataset presents introduces a unique and innovative fruit images dataset of 14,630, including 1,333 original images and the rest of the augmented images for the fruits of strawberries and avocados. The dataset captures the development of strawberries and avocados through four distinct stages: unripe, partially ripe, ripe, and rotten. The fruits were sourced from farms in Mahabaleshwar, Maharashtra, India, and local markets in Pune and Maharashtra. The fruits were regularly monitored from the harvesting stage, with all noticeable changes carefully documented.
DOI: 10.6084/m9.figshare.14381837.v2
title: Supplementary data repository for 'Bacteriophage deficiency characterizes respiratory virome dysbiosis in childhood asthma'

description: Assembly contigs, contig metrics, samplewise read recruitment, and accompanying Jupyter notebooks.<br>
DOI: 10.6084/m9.figshare.27612852.v1
title: 黑神话悟空研究数据

description: 本研究旨在通过在线评论探讨《黑神话：悟空》玩家社区的情感表达和互动模式。通过将社交网络和情感评估理论与社交网络分析和自然语言处理等技术相结合，采用了定量和定性数据分析方法。研究结果表明，玩家的情绪主要从中性到积极不等，游戏机制和文化叙事受到广泛赞赏。此外，该研究还确定了以极端情绪表达和特定集群内异常高的交互率为特征的 astroturfing 实例。意见领袖在社区互动中也发挥了重要作用。这项研究的一个新颖方面是将社交网络理论应用于对游戏评论数据的深入分析，为理解和管理游戏社区提供了新的视角。
DOI: 10.6084/m9.figshare.3557793.v1
title: Appendix D. Soil variables, leaf toughness and diversity indices along the community closure index gradient (CCI) and their breakpoints.

description: Soil variables, leaf toughness and diversity indices along the community closure index gradient (CCI) and their breakpoints.
DOI: 10.6084/m9.figshare.6173957.v1
title: Population allele frequency of 1000G five superpopulations with LD-based SNP pruning ( hg19 )

description: Population allele frequency of 1000G five superpopulations with LD-based SNP pruning ( hg19 ).<br>.gz was created by bgzip on the tab-delimited input text file
DOI: 10.17632/gxf5sy24kg
title: The influence of in-channel obstacles on river sound

description: The sound of a river can change from a babbling brook to a thunderous torrent, and we have previously shown that there is the potential to predict river stage from the river's sub-aerial sound. We examined how alterations in channel configuration can change the relationship between stage and sound pressure level using a white water course to simulate a real world scale channel. By using blocks as roughness elements (RE) we were able to customise the courses obstacles, creating towers of different heights and placements. With running a varied flow discharge of up to 10 cumecs through. We used data collected from microphones, a hydrophone and cameras to monitor the flow and to understand the processes occurring. Further to sound processing, we used image analysis to calculate the area of white water on the surface of the water to determine the mechanism for sound production. Our analysis showed the likeliest source of sub-aerial sound is from white water being produced from the flow's interaction with the REs, with an R2 range of 0.35 to 0.82 from our white water value and sound relationship. In terms of influence on sound, we found that the height of the REs is more important than their spatial distribution, with the taller the RE, the better the logarithmic relationship between sound and stage. We suggest that monitoring in a natural setting will work best in the places with the tallest obstacles and that the quality of the sound-stage relationship is dependent on height.
DOI: 10.17632/mxzh4dxybb
title: KAP Questionnaire on MTS 2022 triage_raw data

description: Hypothesis: There is a strong correlation between triage knowledge and the execution of triage skills, as well as between triage knowledge and attitudes toward the revised MTS version.
Results: The median MTS scores for knowledge, attitudes, and practice were 69.6% (IQR = 60.9% - 73.9%), 40 (IQR = 34-42), and 70.0% (IQR = 60% - 80%), respectively. Significant differences in knowledge scores observed across socio-demographic variables, including age groups (p = 0.005), designation (p = 0.001), educational levels (p = 0.001), types of hospital (p = 0.008), awareness of MTS (p = 0.002), and participation in triage training (p = 0.018). Practice scores varied significantly with gender (p = 0.003), designation (p = 0.001), educational levels (p = 0.001), hospital type (p = 0.001), usage of MTS (p = 0.008), and MyTriage application (p = 0.02) . Post-Bonferroni correction analysis revealed significant knowledge, and practices score differences between nurses and EPs, as well as between AMO and EPs. Furthermore, respondents with doctoral degrees (91.3%, IQR = 91.3) and master's degrees (78.3%, IQR = 69.6 – 82.6) achieved higher median knowledge scores than those with lower qualifications.
DOI: 10.6084/m9.figshare.27079687.v2
title: Towards LLM-generated explanations for component-based knowledge graph question answering systems

description: raw results of experiment