cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12638831.v1
title: Supplementary Material for: A Rat Model with Multivalve Calcification Induced by Subtotal Nephrectomy and High-Phosphorus Diet

description: <b><i>Background:</i></b> Chronic kidney disease (CKD) with known valve calcification (VC) places individuals at high risk of cardiovascular disease. The study of VC in CKD is challenging due to the lack of a suitable research model. Here, we established a rat model of multivalve calcification induced by subtotal nephrectomy and a high-phosphate (HP) diet and analyzed the valve characteristics. <b><i>Methods:</i></b> We established a CKD model in Sprague-Dawley rats by performing 5/6 nephrectomy (5/6Nx) followed by feeding with chow containing different phosphate concentrations for 8, 12, or 16 weeks. The rats were divided into 4 groups: sham+normal phosphate (NP, 0.9% P), sham+high phosphate (HP, 2.0% P), 5/6Nx+NP, and 5/6Nx+HP. Serum creatinine (Scr), blood urea nitrogen (BUN), parathyroid hormone (PTH), calcium, phosphorus, and 24-h urine protein levels were investigated. Pathological examinations included histological characterization, safranin staining, Alcian blue staining, and von Kossa staining at different time points. Using nanoanalytical electron microscopy, we examined valves from rats in the 5/6Nx+HP and sham+HP groups and detected spherical particles using energy-dispersive spectroscopy (EDS) to observe microscopic changes in the valves. In addition, the calcified tissues were analyzed for phase and crystallization properties using an X-ray powder diffractometer. <b><i>Results:</i></b> The rats in the 5/6Nx+HP and 5/6Nx+NP groups presented with increased levels of Scr, BUN, and 24-h urine protein compared with those of the rats in the sham+HP and sham+NP groups. High levels of PTH were observed, and hematoxylin and eosin staining and immunohistochemistry for proliferating cell nuclear antigen showed parathyroid hyperplasia in rats in the 5/6Nx+HP group but not in the 5/6Nx+NP group. In rats in the 5/6Nx+HP group, extracellular matrix glycosylation was observed in the aortic valve in the 12th week and the mitral valve in the 16th week. In the 16th week, chondrocytes appeared in the aortic valve, as confirmed by immunofluorescence and Western blotting. Calcified particles mainly composed of phosphorus and calcium were observed in both the aortic and mitral valves by transmission electron microscopy and scanning electron microscopy (SEM). The main mineral component of the calcified aortic valve particles was hydroxyapatite [Ca<sub>5</sub>(PO<sub>4</sub>)<sub>3</sub>(OH)], as shown by X-ray diffraction. However, there were no obvious differences in heart function between rats in the 5/6Nx+HP and sham+HP groups. <b><i>Conclusions:</i></b> Our findings demonstrate that multivalve calcification is involved in CKD following 16-week HP and that hydroxyapatite [Ca<sub>5</sub>(PO<sub>4</sub>)<sub>3</sub>(OH)] is the main component of the calcified aortic valve particles of rats in the 5/6Nx+HP group.
DOI: 10.6084/m9.figshare.12638768
title: 30NPCLs_18heteroptera_3outgroups_reference_species.zip

description: These data are used to test the phylogenetics performance of the markers developed by ADMarker. They mainly contain capture recovered data of 30 NPCL markers of 18 heteropteran species and 30 marker sequences of 3 outgroup species as well as sequences of reference species<br><br>
DOI: 10.6084/m9.figshare.12638768.v1
title: 30NPCLs_18heteroptera_3outgroups_reference_species.zip

description: These data are used to test the phylogenetics performance of the markers developed by ADMarker. They mainly contain capture recovered data of 30 NPCL markers of 18 heteropteran species and 30 marker sequences of 3 outgroup species as well as sequences of reference species<br><br>
DOI: 10.6084/m9.figshare.12638801.v1
title: Heteroptera_combined_supermatrix.zip

description: These data are used to test the phylogenetics performance of the markers developed by ADMarker. they are the final DNA contatenated supermatrix of Heteroptera <br>
DOI: 10.6084/m9.figshare.12638738
title: Table S3 Summary of the curve estimations, including linear, exponential, and inverse models, for the potential effects of latitude and temperature during the growing season of rice plant on β-diversity indices of the functional genes, archaea, and bacteria in paddy fields.

description: Summary of the curve estimations, including linear, exponential, and inverse models, for the potential effects of latitude and temperature during the growing season of rice plant on β-diversity indices of the functional genes, archaea, and bacteria in paddy fields.The best fit models with lower Akaike’s information criterion (AIC) and higher r2 were marked in bold.
DOI: 10.6084/m9.figshare.12638744
title: Table S4 The slopes (βz) of the taxa-area relationships for the functional genes, archaea, and bacteria in paddy fields from North to South China.

description: The slopes (βz) of the taxa-area relationships for the functional genes, archaea, and bacteria in paddy fields from North to South China.* ln c is the intercept of the log-linear model of taxa-area relationships.
DOI: 10.6084/m9.figshare.12638732
title: Supplementary Material for: Systematic Review of Quality of Life Assessments after Cochlear Implantation in Older Adults

description: Cochlear implants (CI) have increasingly been adopted in older adults with severe to profound sensorineural hearing loss as a result of the growing and aging world population. Consequently, researchers have recently shown great interest in the cost-effectiveness of cochlear implantation and its effect on quality of life (QoL) in older CI users. Therefore, a systematic review and critical evaluation of the available literature on QoL in older adult CI users was performed according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Studies were selected by searching MEDLINE (PubMed) and the Cochrane Library and by checking the reference lists of relevant articles. Inclusion criteria were as follows: (1) the study sample were adults aged 50 years and older with postlingual onset of bilateral severe to profound hearing loss, (2) all subjects received a multi-electrode CI, and (3) QoL was assessed before and after implantation. Out of 1,093 records, 18 articles were accepted for review. Several studies demonstrated significant positive effects of cochlear implantation on QoL in older adults, but high-level evidence-based medicine is lacking. An improvement of QoL was generally reported when using disease-specific instruments, which are designed to detect treatment-specific changes, whereas the outcomes of generic QoL questionnaires, assessing general health states, were rather ambiguous. However, only generic questionnaires would be able to provide calculations of the cost-effectiveness of CI and comparisons across patient populations, diseases, or interventions. Hence, generic and disease-specific QoL instruments are complementary rather than contradictory. In general, older CI users’ QoL was assessed using a variety of methods and instruments, which complicated comparisons between studies. There is a need for a standardized, multidimensional, and comprehensive QoL study protocol including all relevant generic and disease-specific instruments to measure and compare QoL, utility, and/or daily life performance in CI users.
DOI: 10.6084/m9.figshare.12638738.v1
title: Table S3 Summary of the curve estimations, including linear, exponential, and inverse models, for the potential effects of latitude and temperature during the growing season of rice plant on β-diversity indices of the functional genes, archaea, and bacteria in paddy fields.

description: Summary of the curve estimations, including linear, exponential, and inverse models, for the potential effects of latitude and temperature during the growing season of rice plant on β-diversity indices of the functional genes, archaea, and bacteria in paddy fields.The best fit models with lower Akaike’s information criterion (AIC) and higher r2 were marked in bold.
DOI: 10.6084/m9.figshare.12638714
title: Table S2 List of taxonomic groups and references that reported βz values of SARs in the macro- and micro communities.

description: List of taxonomic groups and references that reported βz values of SARs in the macro- and micro communities.
DOI: 10.6084/m9.figshare.12638708
title: Table S1 Information on the 39 paddy fields and the average soil geochemical attributes of 11 samples at each site.

description: *Numbers in the brackets indicate coefficient of variation (CV) of soil geochemical variables within each plot. TN = total nitrogen; OM = organic matter; NPP = net primary productivity.<br>
DOI: 10.6084/m9.figshare.12638714.v1
title: Table S2 List of taxonomic groups and references that reported βz values of SARs in the macro- and micro communities.

description: List of taxonomic groups and references that reported βz values of SARs in the macro- and micro communities.
DOI: 10.6084/m9.figshare.12638693
title: Table 2 Multiple linear regression by including additional environmental factors or net primary productivity in addition to temperature based on the microbial β-diversity

description: Multiple linear regression by including additional environmental factors or net primary productivity in addition to temperature based on the microbial β-diversity.Temp = temperature during the growing season of rice plant; PGS = precipitation during the growing season; OM = organic matter; TN = total nitrogen; NPP = net primary productivity. For soil pH, OM, and TN, their coefficient of variation within each plot were calculated as soil heterogeneity for Pearson correlation analysis. The best fit models with low Akaike’s information criterion (AIC) scores and high r2 values are presented.
DOI: 10.6084/m9.figshare.12638708.v1
title: Table S1 Information on the 39 paddy fields and the average soil geochemical attributes of 11 samples at each site.

description: *Numbers in the brackets indicate coefficient of variation (CV) of soil geochemical variables within each plot. TN = total nitrogen; OM = organic matter; DOC = dissolved organic carbon; TP = total phosphorus; AP = available phosphorus; NPP = net primary productivity.<br>
DOI: 10.6084/m9.figshare.12638693.v1
title: Table 2 Multiple linear regression by including additional environmental factors or net primary productivity in addition to temperature based on the microbial β-diversity

description: Multiple linear regression by including additional environmental factors or net primary productivity in addition to temperature based on the microbial β-diversity.Temp = temperature during the growing season of rice plant; PGS = precipitation during the growing season; OM = organic matter; TN = total nitrogen; NPP = net primary productivity. For soil pH, OM, and TN, their coefficient of variation within each plot were calculated as soil heterogeneity for Pearson correlation analysis. The best fit models with low Akaike’s information criterion (AIC) scores and high r2 values are presented.
DOI: 10.6084/m9.figshare.12638681
title: Supplementary Material for: Enhanced Percutaneous Delivery of Beta-Blockers Using Thermal Resurfacing Drug Delivery System for Topical Treatment of Infantile Hemangiomas

description: <b><i>Background:</i></b> Infantile hemangiomas (IHs) are the most common vascular tumors in children. In the past few years, topical beta-blockers (bBs) have been reported to be an effective treatment of superficial IHs. <b><i>Objective:</i></b> We sought to evaluate the clinical effectiveness and safety profile of enhanced percutaneous delivery of bBs for the treatment of IH. <b><i>Methods:</i></b> A retrospective study of all cases of IHs treated with enhanced percutaneous delivery of bBs between 2018 and 2019 was performed. Epidemiologic, clinical, and treatment data, including effectiveness score and safety, were reviewed. <b><i>Results:</i></b> The study included 11 patients with a total of 11 IHs. Of the total number of IHs, 7 (63.7%) showed a good response to treatment and 4 (36.3%) had a partial response; thus all patients (100%) had good or partial response to treatment. No systemic or local adverse effects were reported. <b><i>Limitations:</i></b> This is an uncontrolled retrospective study. <b><i>Conclusion:</i></b> Enhanced percutaneous delivery of bBs is a safe and efficient topical therapy for IH.
DOI: 10.6084/m9.figshare.12638684
title: Table 1 Pearson correlation between β-diversity of the soil functional genes and microbial communities and environmental conditions.

description: Pearson correlation between β-diversity of the soil functional genes and microbial communities and environmental conditions. Temp = temperature during the growing season; PGS = precipitation during the growing season; DOC = dissolved organic carbon; OM = organic matter; TN = total nitrogen; NPP = net primary productivity. For soil pH, DOC, OM, NH4+-N, NO3--N, TN, and C/N, their coefficient of variation (CV) within each plot were calculated as soil heterogeneity for Pearson correlation analysis. p &lt; 0.05 indicate significant correlations and are listed in bold font.
DOI: 10.6084/m9.figshare.12638681.v1
title: Supplementary Material for: Enhanced Percutaneous Delivery of Beta-Blockers Using Thermal Resurfacing Drug Delivery System for Topical Treatment of Infantile Hemangiomas

description: <b><i>Background:</i></b> Infantile hemangiomas (IHs) are the most common vascular tumors in children. In the past few years, topical beta-blockers (bBs) have been reported to be an effective treatment of superficial IHs. <b><i>Objective:</i></b> We sought to evaluate the clinical effectiveness and safety profile of enhanced percutaneous delivery of bBs for the treatment of IH. <b><i>Methods:</i></b> A retrospective study of all cases of IHs treated with enhanced percutaneous delivery of bBs between 2018 and 2019 was performed. Epidemiologic, clinical, and treatment data, including effectiveness score and safety, were reviewed. <b><i>Results:</i></b> The study included 11 patients with a total of 11 IHs. Of the total number of IHs, 7 (63.7%) showed a good response to treatment and 4 (36.3%) had a partial response; thus all patients (100%) had good or partial response to treatment. No systemic or local adverse effects were reported. <b><i>Limitations:</i></b> This is an uncontrolled retrospective study. <b><i>Conclusion:</i></b> Enhanced percutaneous delivery of bBs is a safe and efficient topical therapy for IH.
DOI: 10.6084/m9.figshare.12638684.v1
title: Table 1 Pearson correlation between β-diversity of the soil functional genes and microbial communities and environmental conditions.

description: Pearson correlation between β-diversity of the soil functional genes and microbial communities and environmental conditions. Temp = temperature during the growing season; PGS = precipitation during the growing season; DOC = dissolved organic carbon; OM = organic matter; TN = total nitrogen; NPP = net primary productivity. For soil pH, DOC, OM, NH4+-N, NO3--N, TN, and C/N, their coefficient of variation (CV) within each plot were calculated as soil heterogeneity for Pearson correlation analysis. p &lt; 0.05 indicate significant correlations and are listed in bold font.
DOI: 10.6084/m9.figshare.12638534
title: data_anomalous paper

description: Partical taxi trajectory data in Beijing
DOI: 10.6084/m9.figshare.12638534.v1
title: data_anomalous paper

description: Partical taxi trajectory data in Beijing
DOI: 10.6084/m9.figshare.12638513
title: Gene database of Vibrio cholerae

description: Comma-shaped under a microscope, <i>Vibrio cholerae</i> is the aetiological agent for cholera that continues to plague the population in areas with poor sanitation. The bacterium is Gram-negative and facultative anaerobic, which provided it with a range of metabolic options that could be supported by either aerobic respiration or fermentation. Armed with a polar flagellum as well as pili, <i>V. cholerae</i> is a motile bacterium. This work sought to provide fundamental information on the genetic repertoire of <i>V. cholerae</i> by parsing its annotated genome sequence downloaded from Genbank. Comprising gene name, gene function and gene sequence of all genes in the genome of <i>V. cholerae</i>, the resource should be useful in identifying potential genes involved in pathogenesis as well as guiding genome editing effort to construct loss of function mutants for understanding new facets of its pathogenesis mechanisms.
DOI: 10.6084/m9.figshare.12638480
title: PROCEEDİNGS OF THE FIRST INTERNATIONAL SCIENTIFIC PRACTICAL VIRTUAL CONFERENCE HUMAN GENETICS AND GENETIC DISEASES: PROBLEMS AND DEVELOPMENT PERSPECTIVES

description: PROCEEDİNGS OF THE FIRST INTERNATIONAL SCIENTIFIC PRACTICAL VIRTUAL CONFERENCE HUMAN GENETICS AND GENETIC DISEASES: PROBLEMS AND DEVELOPMENT PERSPECTIVES
DOI: 10.6084/m9.figshare.12638480.v1
title: PROCEEDİNGS OF THE FIRST INTERNATIONAL SCIENTIFIC PRACTICAL VIRTUAL CONFERENCE HUMAN GENETICS AND GENETIC DISEASES: PROBLEMS AND DEVELOPMENT PERSPECTIVES

description: PROCEEDİNGS OF THE FIRST INTERNATIONAL SCIENTIFIC PRACTICAL VIRTUAL CONFERENCE HUMAN GENETICS AND GENETIC DISEASES: PROBLEMS AND DEVELOPMENT PERSPECTIVES
DOI: 10.6084/m9.figshare.12638214
title: Additional file 4 of LncRNA OIP5-AS1 promotes the malignancy of pancreatic ductal adenocarcinoma via regulating miR-429/FOXD1/ERK pathway

description: Additional file 4: Table S1. Data of 62 miRNAs potentially bind with OIP5-AS1, from starBase 3.0.
DOI: 10.6084/m9.figshare.12638217
title: Additional file 5 of LncRNA OIP5-AS1 promotes the malignancy of pancreatic ductal adenocarcinoma via regulating miR-429/FOXD1/ERK pathway

description: Additional file 5: Table S2. Potential targets of miR-429 were predicted by starBase 3.0.
DOI: 10.6084/m9.figshare.12638214.v1
title: Additional file 4 of LncRNA OIP5-AS1 promotes the malignancy of pancreatic ductal adenocarcinoma via regulating miR-429/FOXD1/ERK pathway

description: Additional file 4: Table S1. Data of 62 miRNAs potentially bind with OIP5-AS1, from starBase 3.0.
DOI: 10.6084/m9.figshare.12638217.v1
title: Additional file 5 of LncRNA OIP5-AS1 promotes the malignancy of pancreatic ductal adenocarcinoma via regulating miR-429/FOXD1/ERK pathway

description: Additional file 5: Table S2. Potential targets of miR-429 were predicted by starBase 3.0.
DOI: 10.6084/m9.figshare.12638136
title: Additional file 1 of A two-step registration-classification approach to automated segmentation of multimodal images for high-throughput greenhouse plant phenotyping

description: Additional file 1: Table S1. Summary of evaluation of 288 case-scenario models for plant image segmentation against ground truth data. 288 case-scenarios result from training of eight classification models (i.e. bayes, da, glm, gpr, linmod, svm, svmreg, net) for three different plant types (arabidopsis, wheat and maize), two different camera views (top/side view), three image modalities (FLU, VIS and FLU+VIS) and three plant developmental stages including: I—juvenile/small, II—mid-stage and III—adult/large shoots, as well as their combinations, i.e. I + II, I + III, II + III, I + II + III.
DOI: 10.6084/m9.figshare.12638136.v1
title: Additional file 1 of A two-step registration-classification approach to automated segmentation of multimodal images for high-throughput greenhouse plant phenotyping

description: Additional file 1: Table S1. Summary of evaluation of 288 case-scenario models for plant image segmentation against ground truth data. 288 case-scenarios result from training of eight classification models (i.e. bayes, da, glm, gpr, linmod, svm, svmreg, net) for three different plant types (arabidopsis, wheat and maize), two different camera views (top/side view), three image modalities (FLU, VIS and FLU+VIS) and three plant developmental stages including: I—juvenile/small, II—mid-stage and III—adult/large shoots, as well as their combinations, i.e. I + II, I + III, II + III, I + II + III.
DOI: 10.6084/m9.figshare.12638113
title: Additional file 1 of Global analysis of expression profile of members of DnaJ gene families involved in capsaicinoids synthesis in pepper (Capsicum annuum L)

description: Additional file 1 Table S1 Primers used for qRT-PCR in this study. Table S2 Fragments per kilobase of exon model per million mapped (FPKM) values of all the CaDnaJs in different pepper tissues. Supplemental Fig. S1 The relative expressions of 8 CaDnaJ genes in placenta from CM334 (pungent) and ECW (non-pungent) based on RNA-seq data. 6DPA, 6 days post-anthesis; 16 DPA, 16 days post-anthesis; 25 DPA, 25 days post-anthesis; MG, mature green; B5, 5 days post-breaker; B10, 10 days post-breaker. Supplemental Fig. S2 The RNA-Seq data of nine capsaicinoid-biosynthetic genes during the different stage of placenta from CM334 (pungent) and ECW (non-pungent). IG (6DPA), immature green fruit (5 days post-anthesis); IG (16DPA), immature green fruit (16 days post-anthesis); IG (25DPA), immature green fruit (25 days post-anthesis); MG, mature green fruit; B, breaker fruits; B5, breaker+ 5 fruits; R, mature red fruits.
DOI: 10.6084/m9.figshare.12638113.v1
title: Additional file 1 of Global analysis of expression profile of members of DnaJ gene families involved in capsaicinoids synthesis in pepper (Capsicum annuum L)

description: Additional file 1 Table S1 Primers used for qRT-PCR in this study. Table S2 Fragments per kilobase of exon model per million mapped (FPKM) values of all the CaDnaJs in different pepper tissues. Supplemental Fig. S1 The relative expressions of 8 CaDnaJ genes in placenta from CM334 (pungent) and ECW (non-pungent) based on RNA-seq data. 6DPA, 6 days post-anthesis; 16 DPA, 16 days post-anthesis; 25 DPA, 25 days post-anthesis; MG, mature green; B5, 5 days post-breaker; B10, 10 days post-breaker. Supplemental Fig. S2 The RNA-Seq data of nine capsaicinoid-biosynthetic genes during the different stage of placenta from CM334 (pungent) and ECW (non-pungent). IG (6DPA), immature green fruit (5 days post-anthesis); IG (16DPA), immature green fruit (16 days post-anthesis); IG (25DPA), immature green fruit (25 days post-anthesis); MG, mature green fruit; B, breaker fruits; B5, breaker+ 5 fruits; R, mature red fruits.
DOI: 10.6084/m9.figshare.12638059
title: Additional file 1 of Reduction of Salmonella contamination on the surface of chicken skin using bacteriophage

description: Additional file 1: Supplementary Table 1. Lytic spectra of Salmonella bacteriophage Tφ11 determined on 35 Salmonella strains. Results were recorded as follows: +++, confluent lysis; ++, semiconfluent lysis; +, individual plaques, −, no lysis.
DOI: 10.6084/m9.figshare.12638049
title: Additional file 2 of Transcriptional responses in Parascaris univalens after in vitro exposure to ivermectin, pyrantel citrate and thiabendazole

description: Additional file 2: Table S2.Parascaris univalens in vitro incubation experiment. Differentially expressed genes (fold change ≥ 2 or and adjusted P-value (Walds test and Benjamini-Hochberg procedure) &lt; 0.05) and their corresponding orthologues according to Swiss-Prot database after 24 h in vitro incubation in media (control 24 h-DMSO). Gene expression was normalized to non-incubated worms (control 0 h).
DOI: 10.6084/m9.figshare.12638059.v1
title: Additional file 1 of Reduction of Salmonella contamination on the surface of chicken skin using bacteriophage

description: Additional file 1: Supplementary Table 1. Lytic spectra of Salmonella bacteriophage Tφ11 determined on 35 Salmonella strains. Results were recorded as follows: +++, confluent lysis; ++, semiconfluent lysis; +, individual plaques, −, no lysis.
DOI: 10.6084/m9.figshare.12638046
title: Additional file 1 of Transcriptional responses in Parascaris univalens after in vitro exposure to ivermectin, pyrantel citrate and thiabendazole

description: Additional file 1: Table S1. Log2 fold change and adjusted P-values for the differentially expressed genes discussed in this article.