cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.nvak5p
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Pistacia atlantica"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081035-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7294/28039055
title: Effects of natural aging on hydrophilicity and mechanical properties of PDMS in various storage environments

description: This repository contains the Excel testing data for the polydimethylsiloxane (PDMS) natural aging study described in the article "Effects of natural aging on hydrophilicity and mechanical properties of PDMS in various storage environments" by Shuyu Zhang and Anne Staples.Polydimethylsiloxane (PDMS) is a synthetic elastomer widely used in biomedical and industrial applications. Despite its widespread use, the natural evolution of its mechanical and surface properties over time remains poorly understood. In this study, we fabricated PDMS samples with base-to-curing agent mixing ratios from 5:1 to 30:1 and aged them for up to 8 weeks under six non-harsh conditions at room temperature. Contact angle measurements revealed increasing hydrophobicity with aging, with maximum increases up to 16.5°. Mechanical testing showed up to 130% increases in Young’s modulus and 60% changes in flexibility after 5 weeks. Storage in mineral oil best preserved surface hydrophilicity, while storage in water best maintained mechanical integrity. These results provide a framework for optimizing PDMS storage conditions in microfluidic and biomedical device applications.
DOI: 10.7294/28039055.v2
title: Effects of natural aging on hydrophilicity and mechanical properties of PDMS in various storage environments

description: This repository contains the Excel testing data for the polydimethylsiloxane (PDMS) natural aging study described in the article "Effects of natural aging on hydrophilicity and mechanical properties of PDMS in various storage environments" by Shuyu Zhang and Anne Staples.Polydimethylsiloxane (PDMS) is a synthetic elastomer widely used in biomedical and industrial applications. Despite its widespread use, the natural evolution of its mechanical and surface properties over time remains poorly understood. In this study, we fabricated PDMS samples with base-to-curing agent mixing ratios from 5:1 to 30:1 and aged them for up to 8 weeks under six non-harsh conditions at room temperature. Contact angle measurements revealed increasing hydrophobicity with aging, with maximum increases up to 16.5°. Mechanical testing showed up to 130% increases in Young’s modulus and 60% changes in flexibility after 5 weeks. Storage in mineral oil best preserved surface hydrophilicity, while storage in water best maintained mechanical integrity. These results provide a framework for optimizing PDMS storage conditions in microfluidic and biomedical device applications.
DOI: 10.7294/28039055.v1
title: Effects of natural aging on hydrophilicity and mechanical properties of PDMS in various storage environments

description: This repository contains the Excel testing data for the polydimethylsiloxane (PDMS) natural aging study described in the article "Effects of natural aging on hydrophilicity and mechanical properties of PDMS in various storage environments" by Shuyu Zhang and Anne Staples.Polydimethylsiloxane (PDMS) is a synthetic elastomer widely used in biomedical and industrial applications. Despite its widespread use, the natural evolution of its mechanical and surface properties over time remains poorly understood. In this study, we fabricated PDMS samples with base-to-curing-agent ratios from 5:1 to 30:1 and aged them for 8 weeks under six non-harsh conditions at room temperature. Contact angle measurements revealed increasing hydrophobicity with aging, with maximum increases up to 16.5°. Mechanical testing showed up to 130% increases in Young’s modulus and 60% changes in flexibility after 5 weeks. Storage in air, DI water, and mineral oil best preserved surface hydrophilicity, while DI water best maintained mechanical integrity. These results provide a framework for optimizing PDMS storage conditions in microfluidic and biomedical device applications.
DOI: 10.15468/dl.8gcfdh
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tabebuia roseoalba",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 155 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081036-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7x282
title: Occurrence Download

description: A dataset containing 19027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Ammi L."
 ]
}

 The dataset includes 19027 records from 567 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011287-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/76t-s0r-0f9
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x7y-22c-xs0
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/349-da8-8e2
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h1c-qt6-cg1
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/htc-w8k-pkm
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/d68-sxm-f4w
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kjt-bqv-6ss
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zk5-fwa-mn4
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wf4-hkq-f7b
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ldd-gle-ag2
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r49-v39-l5s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/49c-12q-j22
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x94-r90-qpn
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/re1-jkg-1s8
title: Capulus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.pksjd3
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is one of (396d5f30-dea9-11db-8ab4-b8a03c50a862, 061b4f20-f241-11da-a328-b8a03c50a862, f5fc4e61-b7a0-414b-ab68-b41cb23e7fdc)",
 "TaxonKey is Cycas simplicipinna"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022137-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4lw-cgx-md0
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tmq-e2w-pmx
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1ge-8rk-7jd
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h16-q4t-56v
title: Knipowitschia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/znc-3se-lzq
title: Rhacophyllites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5m1-59z-537
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/502-7c9-aw6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l3x-83f-eqr
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mjs-tvd-pdl
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/91l-vw6-r9n
title: Gazella Blainville, 1816

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/00f-fxs-gdk
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4v8-elm-rcr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m3d-lp1-14l
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zjt-jht-ydz
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3q7-wdy-md7
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hmd-hyy-mt3
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/47s-mep-93z
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/94f-5hf-5cr
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fjv-whg-7yw
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zpy-m09-0gh
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zzm-t68-r9l
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9s6-m7c-dds
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jtq-7jp-ywx
title: Anatomites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5b6-a6n-whx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ywq-sxp-8ng
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.2jyu8v
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "TaxonKey is Avena clauda"
 ]
}

 The dataset includes 55 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027279-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4nwk8
title: Occurrence Download

description: A dataset containing 36817 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36817 records from 429 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004649-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48612/msupe/88ku-fhte-vunb
title: Разработка оригинального опросника механизмов ассимиляции-элиминации

description: Механизмы ассимиляции (включение существенного) и элиминации (удаление лишнего) играют ключевую роль в психическом здоровье и субъективной удовлетворенности жизнью, однако существующие инструменты их оценки недостаточно разработаны. Теоретической основой исследования выступили концепции психологической адаптации, ассертивности и суверенности психологического пространства. Представлены данные первой и второй апробации при разработке нового оригинального опросника механизмов ассимиляции и элиминации.
DOI: 10.15468/dl.652d7v
title: Occurrence Download

description: A dataset containing 735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.38116 51.15809,7.0353 51.15809,7.0353 53.97814,3.38116 53.97814,3.38116 51.15809))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Porifera",
 "Year 2018-2023"
 ]
}

 The dataset includes 735 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004652-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsvpty
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Cuba, Mexico)",
 "Geometry POLYGON((-84.54692 21.00668,-81.3295 21.00668,-81.3295 23.26436,-84.54692 23.26436,-84.54692 21.00668))",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Eleutherodactylus planirostris (Cope, 1862)"
 ]
}

 The dataset includes 107 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008603-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/28566413
title: Data from: Response of beetles (Coleoptera) to repeated applications of prescribed fire and other fuel reduction techniques in the southern Appalachian Mountains

description: Coleoptera are important components of forest ecosystems and can be affected by forest management schemes aimed at limiting fuel build-up. Our research objective was to determine if repeated applications of fuel reduction treatments resulted in changes in abundance or diversity of beetle (Coleoptera) families, genera, and species within upland mixed hardwood forests in the southern Appalachians Mountains, North Carolina, USA. We established three replicate blocks (∼56 ha) and split each block into four fuel reduction treatments. Treatments included prescribed burning, mechanical felling, a combination of prescribed burning and mechanical felling, and a control (i.e., no fuel reduction techniques applied). We implemented treatments multiple times (2 mechanical thinnings and 4 prescribed burns) over the course of a 15-year period. Using pitfall and colored pan traps, we captured 7037 coleopterans comprised of 62 families over a three-year period. Total coleopteran abundance and diversity were similar across all treatments; however, some beetle families, genera, and species responded to treatments. Nitidulidae were significantly more abundant within controls compared to all other treatments in 2015, whereas Mordellidae generally had higher abundances in mechanical and burns compared to mechanical in 2015 and mechanical and controls in 2016. Chrysomelidae was significantly more abundant in mechanical and burns compared to all other treatments over the entire duration of the study. However, Staphylinidae abundance was significantly lower in mechanical and burns compared to the other treatments. Numerous genera and species also showed variable treatment-level responses. Burn treatments killed some mature trees and reduced forest canopy cover, resulting in higher light availability and thereby greater herbaceous cover and diversity on the forest floor. This vegetation in the understory of burned treatment units may be partially responsible for many of the treatment-level responses of beetle taxa we documented. This study took place after several rounds of fuel reduction techniques were applied over a 15 year period. Some beetle abundance responses were immediate; whereas other groups seemed to be influenced by the application of treatments over time, highlighting the need to examine long-term responses to forest management practices.This research was funded by a USDA-Joint Fire Science Program (JFSP Project Number: 09-1-10-1).
DOI: 10.15482/usda.adc/28566413.v1
title: Data from: Response of beetles (Coleoptera) to repeated applications of prescribed fire and other fuel reduction techniques in the southern Appalachian Mountains

description: Coleoptera are important components of forest ecosystems and can be affected by forest management schemes aimed at limiting fuel build-up. Our research objective was to determine if repeated applications of fuel reduction treatments resulted in changes in abundance or diversity of beetle (Coleoptera) families, genera, and species within upland mixed hardwood forests in the southern Appalachians Mountains, North Carolina, USA. We established three replicate blocks (∼56 ha) and split each block into four fuel reduction treatments. Treatments included prescribed burning, mechanical felling, a combination of prescribed burning and mechanical felling, and a control (i.e., no fuel reduction techniques applied). We implemented treatments multiple times (2 mechanical thinnings and 4 prescribed burns) over the course of a 15-year period. Using pitfall and colored pan traps, we captured 7037 coleopterans comprised of 62 families over a three-year period. Total coleopteran abundance and diversity were similar across all treatments; however, some beetle families, genera, and species responded to treatments. Nitidulidae were significantly more abundant within controls compared to all other treatments in 2015, whereas Mordellidae generally had higher abundances in mechanical and burns compared to mechanical in 2015 and mechanical and controls in 2016. Chrysomelidae was significantly more abundant in mechanical and burns compared to all other treatments over the entire duration of the study. However, Staphylinidae abundance was significantly lower in mechanical and burns compared to the other treatments. Numerous genera and species also showed variable treatment-level responses. Burn treatments killed some mature trees and reduced forest canopy cover, resulting in higher light availability and thereby greater herbaceous cover and diversity on the forest floor. This vegetation in the understory of burned treatment units may be partially responsible for many of the treatment-level responses of beetle taxa we documented. This study took place after several rounds of fuel reduction techniques were applied over a 15 year period. Some beetle abundance responses were immediate; whereas other groups seemed to be influenced by the application of treatments over time, highlighting the need to examine long-term responses to forest management practices.This research was funded by a USDA-Joint Fire Science Program (JFSP Project Number: 09-1-10-1).
DOI: 10.15468/dl.nganyb
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nanophyton erinaceum",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 199 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025367-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xp3fd7
title: Occurrence Download

description: A dataset containing 12585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Erythronium albidum"
 ]
}

 The dataset includes 12585 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025365-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10716953
title: CS-IAAS_v1.1

description: A complete bread wheat telomere-to-telomere genome provides insights into the evolution, transcriptome, and proteome of a hexaploid genome

Peking University Institute of Advanced Agricultural Sciences,

 

 

Complete assemblies of huge and complex plant genomes remain a challenge, and the hexaploid wheat genome stands as the most difficult one among staple food crop genomes. Here, we present CS-IAAS, a comprehensive telomere-to-telomere (T2T) gap-free Triticum aestivumL. reference genome, encompassing 14.51 billion base pairs and featuring all 21 centromeres and 42 telomeres.

## The genome sequence of Triticum aestivum cv. Chinese Spring

        CS-IAAS_v1.1.zip

## Annotation of CS-IAAS_v1.1

All gene structure are in GFF format for both High Confidence and Low Confidence genes.

CS-IAAS_v1.1_annotation.zip

All gene function are for both High Confidence and Low Confidence genes.

CS-IAAS_v1.1_function_annotation.zip

## TE Annotation of CS-IAAS_v1.1

        TE_v1.1.gff3

        TE_v1.1.class.gff3 ((Include TE (Transposable Element) Classification))

Code/Software

Packages involved in data analysis pipelines are listed in the Methods. The code used for assembly and evaluation is available on GitHub at:





https://github.com/liushoucheng/SPART.
DOI: 10.5281/zenodo.16761345
title: CS-IAAS_v1.1

description: A complete bread wheat telomere-to-telomere genome provides insights into the evolution, transcriptome, and proteome of a hexaploid genome

Peking University Institute of Advanced Agricultural Sciences,

 

 

Complete assemblies of huge and complex plant genomes remain a challenge, and the hexaploid wheat genome stands as the most difficult one among staple food crop genomes. Here, we present CS-IAAS, a comprehensive telomere-to-telomere (T2T) gap-free Triticum aestivumL. reference genome, encompassing 14.51 billion base pairs and featuring all 21 centromeres and 42 telomeres.

## The genome sequence of Triticum aestivum cv. Chinese Spring

        CS-IAAS_v1.1.zip

## Annotation of CS-IAAS_v1.1

All gene structure are in GFF format for both High Confidence and Low Confidence genes.

CS-IAAS_v1.1_annotation.zip

All gene function are for both High Confidence and Low Confidence genes.

CS-IAAS_v1.1_function_annotation.zip

## TE Annotation of CS-IAAS_v1.1

        TE_v1.1.gff3

        TE_v1.1.class.gff3 ((Include TE (Transposable Element) Classification))

Code/Software

Packages involved in data analysis pipelines are listed in the Methods. The code used for assembly and evaluation is available on GitHub at:





https://github.com/liushoucheng/SPART.