cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.my8hzn
title: Occurrence Download

description: A dataset containing 5698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amynthas agrestis, Branchiura sowerbyi, Limnodrilus cervix, Potamothrix bavaricus, Potamothrix bedoti, Potamothrix heuscheri, Potamothrix moldaviensis, Potamothrix vejdovskyi, Telmatogeton japonicus)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than or equal to 34",
 "DecimalLatitude is less than or equal to 72",
 "DecimalLongitude is greater than or equal to -15",
 "DecimalLongitude is less than or equal to 45",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5698 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002065-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewjw32
title: Occurrence Download

description: A dataset containing 1988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phosichthys argenteus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 1988 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002066-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/28378
title: Chandra X-ray Observatory ObsId 28378

description: AO-25 Calibration Observations of HZ43
DOI: 10.25574/29610
title: Chandra X-ray Observatory ObsId 29610

description: AO-26 Big Dither Observation of Mkn421
DOI: 10.15468/dl.xt6ppt
title: Occurrence Download

description: A dataset containing 64674 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Island Project - Fungal communities in boreal forest soils"
 ]
}

 The dataset includes 64674 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002047-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z3j656
title: Occurrence Download

description: A dataset containing 99682 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Royal Ontario Museum - Mycology"
 ]
}

 The dataset includes 99682 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002050-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.5tb2rbp0v
title: Data from: Neurotrophins induce fission of mitochondria along embryonic sensory axons

description: Neurotrophins are growth factors that have a multitude of roles in the
 nervous system. We report that neurotrophins induce the fission of
 mitochondria along embryonic chick sensory axons driven by combined PI3K
 and Mek-Erk signaling. Following an initial burst of fission a new steady
 state of neurotrophin-dependent mitochondria length is established.
 Mek-Erk controls the activity of the fission mediator Drp1 GTPase, while
 PI3K may contribute to the actin dependent aspect of fission.
 Drp1-mediated fission is required for nerve growth factor (NGF) induced
 collateral branching in vitro and expression of dominant negative Drp1
 impairs the branching of axons in the developing spinal cord in vivo.
 Fission is also required for NGF-induced mitochondria-dependent
 intra-axonal translation of the actin regulatory protein cortactin, a
 previously determined component of NGF-induced branching. Collectively,
 these observations unveil a novel biological function of neurotrophins;
 the regulation of mitochondrial fission and steady state mitochondrial
 length and density in axons.
description: see manuscript Armijo-Weingart et al "Neurotrophins Induce
 Fission of Mitochondria Along Embryonic Sensory axons"
 eLife
description: see manuscript Armijo-Weingart et al "Neurotrophins Induce
 Fission of Mitochondria Along Embryonic Sensory axons"
 eLife
DOI: 10.5061/dryad.n8pk0p2r8
title: Defense against outside competition is linked to cooperation in male-male partnerships

description: Male-male competition is a well-known driver of reproductive success and
 sexually-selected traits in many species. However, in some species, males
 work together to court females or defend territories against male
 competitors. Dominant (nesting) males sire most offspring, but subordinate
 (satellite) males are better able to sneak fertilizations relative to
 unpartnered males. Because satellites only gain reproductive success by
 sneaking, there has been much interest in identifying the mechanisms
 enforcing satellite cooperation (defense) and reducing satellite sneaking.
 One such potential mechanism is outside competition: unpartnered
 satellites can destabilize established male partnerships and may force
 partnered satellites to restrain from cheating to prevent the dominant
 male from replacing them with an unpartnered satellite. Here, we
 manipulated perceived competition in the Mediterranean fish Symphodus
 ocellatus by presenting an “intruding” satellite male to established
 nesting and satellite male pairs. Focal satellite aggression to the
 intruder was higher when satellites were less cooperative, suggesting that
 satellites increase aggression to outside competitors when their social
 position is less stable. In contrast, nesting male aggression to the
 intruder satellite increased as spawning activity increased, suggesting
 that nesting males increase their defense toward outside competitors when
 their current relationship is productive. We found no evidence of altered
 spawning activity or nesting/satellite male interactions before and after
 the presentation. These results collectively suggest that response to
 outside competition is directly linked to behavioral dynamics between
 unrelated male partners and may be linked to conflict and cooperation in
 ways that are similar to group-living species.
description: Field data- behavioral and nest information
DOI: 10.5061/dryad.2jm63xsk2
title: Carbon flux and gross primary production of a scrub of Mexico

description: Vegetation fixes C in its biomass through photosynthesis or might release
 it into the atmosphere through respiration. Measurements of these fluxes
 would help us to understand ecosystem functioning. This data is related to
 carbon flux (NEE) colected with the eddy covariance technique (EC_Data).
 The NEE is the balance between gross primary production (GPP) and
 ecosystem respiration (Reco) both calculated using the recent R package
 Reddyproc (Code Reddyproc). The database also include estimates
 of GPP of MOD17A2H product of MODIS Satellite for four pixels of a site
 with scrub vegetation in Mexico (GPP_MODIS). The programming code include
 the pre-procecing of NEE and the Theil-Sen and Linear model to describe
 the relationship between GPP of EC and GPP of MODIS (Code Theil-Sen).
DOI: 10.25574/30271
title: Chandra X-ray Observatory ObsId 30271

description: AO-26 Big Dither Observation of Mkn421
DOI: 10.5061/dryad.tdz08kpw2
title: Data from: Forest structure and snow depth alter the movement patterns and subsequent expenditures of a forest carnivore, the Pacific marten

description: Energetic balance is central to the survival and persistence of
 free-ranging animals. Quantifying expenditures and identifying factors
 that drive energetics informs our understanding of species’ ecology and
 their responses to shifting environmental conditions. Approaches used to
 estimate energetic expenditures of free-ranging species, such as
 doubly-labelled water (DLW), are precise but difficult to implement.
 Global positioning system (GPS) collars and accelerometers have emerged as
 alternatives for estimating expenditures, but these techniques have few
 applications in terrestrial species and no applications in small-bodied
 (&lt;5kg) terrestrial animals. Here, we estimated movement
 characteristics and field metabolic rates (FMR) of Pacific martens (Martes
 caurina), a small-bodied carnivore with relatively high energetic costs,
 in a heterogeneous landscape to explore the role of movement and landscape
 characteristics on energetics. We concurrently used DLW and GPS collars to
 investigate the relationship between movement characteristics and FMR.
 Movement velocity explained the greatest amount of variation in
 mass-specific FMR and we used this relationship to predict expenditures of
 previously collared martens. We found that predicted mass-specific FMR was
 highest among males and increased in open patches primarily as a result of
 increased velocity and more erratic movements. Additionally, martens
 moving through deep snow also exhibited increased FMR. Our work shows
 movement metrics can effectively explain variation in FMR and identify
 landscape features, like forest structure and snow depth, that influence
 movements with cascading effects on energetics for free-ranging mammals in
 rapidly changing systems.
description: MartenData_Summaries_191121 This spreadsheet
 includes summary data regarding the energetic expenditures, landscape
 characteristics of use areas, and physical characteristics of martens
 monitored for this research.
DOI: 10.25574/30273
title: Chandra X-ray Observatory ObsId 30273

description: AO-26 Big Dither Observation of Mkn421
DOI: 10.5061/dryad.dv41ns1tp
title: Data from: Aridity Drives Spatiotemporal Patterns of Masting Across the Latitudinal Range of a Dryland Conifer

description: Masting, or the synchronous and irregular production of seed crops, is
 controlled by environmental cues and resource budgets. Increasing
 temperatures and shifting precipitation regimes may alter the frequency
 and magnitude of masting, especially in species that experience chronic
 resource stress. Yet the effects of a changing climate on seed production
 are unlikely to be uniform across populations, particularly those that
 span broad abiotic gradients. In this study, we assessed the
 spatiotemporal patterns of masting across the latitudinal distribution of
 a widely distributed dryland conifer species, piñon pine (Pinus edulis).
 We quantified seed cone production from 2004-2017 using cone abscission
 scars in 187 trees from 28 sites along an 1100 km latitudinal gradient to
 investigate the spatiotemporal drivers of seed cone production and
 synchrony across populations. Populations from chronically hot and dry
 areas (greater climatic water deficits and less monsoonal precipitation)
 tended to have greater interannual variability in seed cone production and
 smaller crop sizes. Mast years generally followed years with low vapor
 pressure deficits and high precipitation during key periods of the
 reproductive process, but the strength of these relationships varied
 across the region. Populations that received greater monsoonal
 precipitation were less sensitive to late summer vapor pressure deficits
 during seed cone initiation yet more sensitive to spring vapor pressure
 deficits during pollination. Spatially correlated patterns of vapor
 pressure deficit better predicted synchrony in seed cone production than
 geographic distance, and these patterns were conserved at distances up to
 500 km. These results demonstrate that water stress drives spatiotemporal
 variability in seed cone production. As a result, projected increases in
 aridity are likely to decrease the frequency and magnitude of masting in
 these dry forests and woodlands. Declines in seed production may compound
 climatic limitations to recruitment and impede tree regeneration, with
 cascading effects for numerous wildlife species.
DOI: 10.5061/dryad.612jm6403
title: Fine‐scale habitat heterogeneity and vole runways influence seed dispersal in Plagiobothrys nothofulvus

description: PREMISE: Seed dispersal allows plants to colonize new sites and
 contributes to gene flow among populations. Despite its fundamental
 importance to ecological and evolutionary processes, our understanding of
 seed dispersal is limited due to the difficulty of directly observing
 dispersal events. This is particularly true for the majority of plant
 species that are considered to have gravity as their primary dispersal
 mechanism. The potential for long-distance movement of gravity-dispersed
 seeds by secondary dispersal vectors is rarely evaluated.  
 METHODS: We employ whole-genome assays of maternally inherited cpDNA in
 Plagiobothrys nothofulvus to resolve patterns of genetic variation due to
 effective (realized) seed dispersal within a 16 hectare prairie that is
 characterized by a mosaic of habitat types. We evaluate the effects of
 microgeographic landscape features extracted from micro-UAV aerial surveys
 on patterns of seed dispersal using landscape genetics methods. RESULTS:
 We found evidence of high resistance to seed-mediated gene flow
 ­(effective dispersal) within patches of P. nothofulvus, and strong
 genetic structure over distances of less than 20 meters. Geographic
 distance was a poor predictor of dispersal distance, while landscape
 features had stronger influences on patterns of dispersal (distance and
 direction of seed movement). Patterns of dispersal were best predicted by
 the combined distribution of flower patches, habitat type, and the network
 of vole runways, with the latter explaining the largest proportion of
 variation in the model. CONCLUSIONS: Our results suggest that primary
 dispersal occurs mostly within microhabitats and infrequent secondary
 dispersal may occur over longer distances due to the activity of small
 mammals and other vertebrates.
DOI: 10.5061/dryad.bvq83bk59
title: Data from: An analysis of mating biases in trees

description: Assortative mating is a deviation from random mating based on phenotypic
 similarity. As it is much better studied in animals than in plants, we
 investigate for trees whether kinship of realized mating pairs deviates
 from what is expected from the set of potential mates and use this
 information to infer mating biases that may result from kin recognition
 and/or assortative mating. Our analysis covers twenty species of trees for
 which microsatellite data is available for adult populations (potential
 mates) as well as seed arrays. We test whether mean relatedness of
 observed mating pairs deviates from null expectations that only take
 pollen dispersal distances into account (estimated from the same dataset).
 This allows to identify elevated as well as reduced kinship among realized
 mating pairs, indicative of positive and negative assortative mating,
 respectively. The test is also able to distinguish elevated biparental
 inbreeding that occurs solely as a result of related pairs growing closer
 to each other from further assortativeness. Assortative mating in trees
 appears potentially common but not ubiquitous: nine data sets show mating
 bias with elevated inbreeding, nine do not deviate significantly from the
 null expectation, and two show mating bias with reduced inbreeding. While
 our datasets lack direct information on phenology, our investigation of
 the phenological literature for each species identifies flowering
 phenology as a potential driver of positive assortative mating (leading to
 elevated inbreeding) in trees. Since active kin recognition provides an
 alternative hypothesis for these patterns, we encourage further
 investigations on the processes and traits that influence mating patterns
 in trees.
description: For all data sets we calculated pairwise kinship coefficients (<i>F<sub>ij</sub></i>, Loiselle <i>et al. </i>1995) and pairwise geographic distances for all adult trees, using software SPAGeDi 1-5a (Hardy and Vekemans 2002). Paternity assignments were conducted with Cervus 3.0.7 (Marshall <i>et al. </i>1998; Kalinowski <i>et al. </i>2007).
DOI: 10.6078/d1km48
title: Intraspecific variation in thermal acclimation and tolerance between populations of the winter ant, Prenolepis imparis

description: Thermal phenotypic plasticity, otherwise known as acclimation, plays an
 essential role in how organisms respond to short‐term temperature changes.
 Plasticity buffers the impact of harmful temperature changes; therefore,
 understanding variation in plasticity in natural populations is crucial
 for understanding how species will respond to the changing climate.
 However, very few studies have examined patterns of phenotypic plasticity
 among populations, especially among ant populations. Considering that this
 intraspecies variation can provide insight into adaptive variation in
 populations, the goal of this study was to quantify the short‐term
 acclimation ability and thermal tolerance of several populations of the
 winter ant, Prenolepis imparis. We tested for correlations
 between thermal plasticity and thermal tolerance, elevation, and body
 size. We characterized the thermal environment both above and below ground
 for several populations distributed across different elevations within
 California, USA. In addition, we measured the short‐term acclimation
 ability and thermal tolerance of those populations. To measure thermal
 tolerance, we used chill‐coma recovery time (CCRT) and knockdown time as
 indicators of cold and heat tolerance, respectively. Short‐term phenotypic
 plasticity was assessed by calculating acclimation capacity using CCRT and
 knockdown time after exposure to both high and low temperatures. We found
 that several populations displayed different chill‐coma recovery times and
 a few displayed different heat knockdown times, and that the acclimation
 capacities of cold and heat tolerance differed among most populations. The
 high‐elevation populations displayed increased tolerance to the cold
 (faster CCRT) and greater plasticity. For high‐temperature tolerance, we
 found heat tolerance was not associated with altitude; instead, greater
 tolerance to the heat was correlated with increased plasticity at higher
 temperatures. These current findings provide insight into thermal
 adaptation and factors that contribute to phenotypic diversity by
 revealing physiological variance among populations.
description: This is the unprocessed chill-coma recovery times and knockdown
 times.
DOI: 10.5281/zenodo.17247824
title: Acoustic Data and Radiosonde Measurements Collected During the AtmoSense Campaign (2024)

description: Supporting data for Silber et al. (2026) "Observational Evidence for Wind-Driven Low-Pass Filtering of Infrasound at Short Range", GRL

This dataset contains infrasound and radiosonde measurements collected during the AtmoSense campaigns conducted at the Energetic Materials Research and Testing Center (EMRTC) in Socorro, New Mexico. Two controlled-source experiments were carried out on May 8, 2024 (BB1) and October 16, 2024 (BB2), each featuring a 10-ton TNT-equivalent surface explosion recorded by a dense local network of single-sensor infrasound stations within 23 km of the source. Radiosonde soundings were collected during both campaigns to characterize atmospheric conditions up to 16–17 km altitude. The read-me.txt file describes the files included and the file types.
DOI: 10.5281/zenodo.17247825
title: Acoustic Data and Radiosonde Measurements Collected During the AtmoSense Campaign (2024)

description: Supporting data for Silber et al. (2026) "Observational Evidence for Wind-Driven Low-Pass Filtering of Infrasound at Short Range", GRL

This dataset contains infrasound and radiosonde measurements collected during the AtmoSense campaigns conducted at the Energetic Materials Research and Testing Center (EMRTC) in Socorro, New Mexico. Two controlled-source experiments were carried out on May 8, 2024 (BB1) and October 16, 2024 (BB2), each featuring a 10-ton TNT-equivalent surface explosion recorded by a dense local network of single-sensor infrasound stations within 23 km of the source. Radiosonde soundings were collected during both campaigns to characterize atmospheric conditions up to 16–17 km altitude. The read-me.txt file describes the files included and the file types.
DOI: 10.5061/dryad.4f4qrfj7m
title: Direct and indirect effects of environmental factors, spatial constraints, and functional traits on shaping the plant diversity of montane forests

description: Understanding the relative importance of the factors driving the patterns
 of biodiversity is a key research topic in community ecology and
 biogeography. However, the main drivers of plant species diversity in
 montane forests are still not clear. In addition, most existing studies
 make no distinction between direct and indirect effects of environmental
 factors, spatial constraints on plant biodiversity. Using data from 107
 montane forest plots in Sichuan Giant Panda habitat, China, we quantified
 the direct and indirect effects of abiotic environmental factors, spatial
 constraints, and plant functional traits on plant community diversity. Our
 results showed significant correlations between abiotic environmental
 factors and trees (r = 0.10, P value = 0.001), shrubs (r = 0.19, P value =
 0.001), or overall plant diversity (r = 0.18, P value = 0.001) in montane
 forests. Spatial constraints also showed significant correlations with
 trees, and shrubs. However, no significant correlations were found between
 functional traits and plant community diversity. Moreover, the diversity
 (richness and abundance) of shrubs, trees, and plant communities was
 directly affected by precipitation, latitude, and altitude. Mean annual
 temperature (MAT) had no direct effect on the richness of tree and plant
 communities. Further, MAT and precipitation indirectly affected plant
 communities via the tree canopy. The results revealed a stronger direct
 effect on montane plant diversity than indirect effect, suggesting that
 single-species models may be adequate for forecasting the impacts of
 climate factors in these communities. The shifting of tree canopy coverage
 might be a potential indicator for trends of plant diversity under climate
 change.
DOI: 10.5061/dryad.stqjq2c03
title: Altered Gut Microbiome Profile in Patients with Pulmonary Arterial Hypertension

description: Pulmonary arterial hypertension (PAH) is considered a disease of the
 pulmonary vasculature. Limited progress has been made in preventing or
 arresting progression of PAH despite extensive efforts. Our previous
 studies indicated that PAH could be considered a systemic disease since
 its pathology involves interplay of multiple organs. This, coupled with
 increasing implication of the gut and its microbiome in chronic diseases,
 led us to hypothesize that PAH patients exhibit a distinct gut microbiome
 that contributes to, and predicts, the disease. Fecal microbiome of 18
 type 1 PAH patients (mean pulmonary arterial pressure [mPAP] 57.4,
 standard deviation 16.7 mmHg) and 13 reference subjects (REF) were
 compared by shotgun metagenomics to evaluate this hypothesis. Significant
 taxonomic and functional changes in microbial communities in the PAH
 cohort were observed. Pathways for the synthesis of arginine, proline and
 ornithine were increased in PAH cohort compared with REF cohort.
 Additionally, groups of bacterial communities associated with
 trimethylamine/ trimethylamine N-oxide and purine metabolism, were
 increased in PAH cohort. In contrast, butyrate-and propionate-producing
 bacteria such as Coprococcus, Butyrivibrio, Lachnospiraceae, Eubacterium,
 Akkermansia and Bacteroides were increased in REF cohort. A random forest
 model predicted PAH from the composition of the gut microbiome with 83%
 accuracy. Finally, virome analysis showed enrichment of Enterococcal and
 relative depletion of Lactococcal phages in the PAH cohort. In conclusion,
 PAH patients exhibit a unique microbiome profile that has high predictive
 potential for PAH. This highlights previously unknown roles of gut
 bacteria in this disease and could lead to new therapeutic, diagnostic or
 management paradigms for PAH.