cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7875389
title: Orthoptera observations, Pyrenees 2021

description: Observations of Orthoptera and associated metadata, which were collected as part of a project to investigate the relationship between elevation and the elevational range over which Orthoptera are found, in the Pyrenees. Orthoptera were recorded in the Catalan Pyrenees in the summer of 2021 at three different locations. This repository contains the data and metadata resulting from these surveys, as well as human and machine-readable descriptions of the data files.
description: If you use this dataset, please cite it using the metadata from this file.
DOI: 10.3886/mgsk-h353
title: Benin Compact - Access to Land - Rural: Final Analysis Report
DOI: 10.3886/hq0r-2f26
title: Benin Compact - Access to Land - Rural: Final Analysis Report
DOI: 10.7274/24732672
title: Fluorescence Microscopy Image Denoising Dataset: Validation

description: Here is the repository for the validation of Noise2Noise ImageJ plugin model with out-of-distribution samples. Note: These results are using only test (inference) with the pre-trained image denoising models. Main Github files: https://github.com/ND-HowardGroup/Instant-Image-Denoising/tree/master/Plugins
DOI: 10.7274/24732672.v1
title: Fluorescence Microscopy Image Denoising Dataset: Validation

description: Here is the repository for the validation of Noise2Noise ImageJ plugin model with out-of-distribution samples. Note: These results are using only test (inference) with the pre-trained image denoising models. Main Github files: https://github.com/ND-HowardGroup/Instant-Image-Denoising/tree/master/Plugins
DOI: 10.17909/qgt8-e846
title: JWST Imaging of Supernova H0pe

description: These are the JWST imaging observations used to measure photometry, time-delays, and subsequently the Hubble constant using the gravitationally lensed supernova "H0pe".
DOI: 10.6084/m9.figshare.24777177
title: <b>Feasibility of increasing Calcium Content of Drinking Tap Water following Quality Regulations to improve Calcium Intake at Population Level</b>: raw data

description: The aim of the present study was to determine the maximum amount of calcium that can be added to tap water while complying with drinking water local regulations.<b>Methods</b>Tap water samples were collected from the Province of Buenos Aires (Argentina). Physicochemical properties and saturation index were measured. Different incremental concentrations of calcium chloride were added to the experimental aliquots.
DOI: 10.6084/m9.figshare.24777177.v1
title: <b>Feasibility of increasing Calcium Content of Drinking Tap Water following Quality Regulations to improve Calcium Intake at Population Level</b>: raw data

description: The aim of the present study was to determine the maximum amount of calcium that can be added to tap water while complying with drinking water local regulations.<b>Methods</b>Tap water samples were collected from the Province of Buenos Aires (Argentina). Physicochemical properties and saturation index were measured. Different incremental concentrations of calcium chloride were added to the experimental aliquots.
DOI: 10.7294/24773736
title: All code and datasets for, "Differences in urban arthropod communities may not limit the nestling diet of a generalist songbird"

description:  In this study we analyzed how arthropod communities might differ in terms of abundance, biomass, and diversity between urban and rural habitats in Southwest Virginia. We additionally explored how any of these differences might have effects on the diet of a local arthropod predator, the song sparrow (Melospiza melodia). To this end we quantified the mass of stomach contents as well as arthropod abundance in both rural and urban song sparrow nestlings.
DOI: 10.7294/24773736.v1
title: All code and datasets for, "Differences in urban arthropod communities may not limit the nestling diet of a generalist songbird"

description:  In this study we analyzed how arthropod communities might differ in terms of abundance, biomass, and diversity between urban and rural habitats in Southwest Virginia. We additionally explored how any of these differences might have effects on the diet of a local arthropod predator, the song sparrow (Melospiza melodia). To this end we quantified the mass of stomach contents as well as arthropod abundance in both rural and urban song sparrow nestlings.
DOI: 10.6084/m9.figshare.24595515
title: Data for the paper FUNCTION, 2023, 4(3): zqad018

description: Data of the published paper for FUNCTION, 2023, 4(3): zqad018
DOI: 10.6084/m9.figshare.24595515.v1
title: Data for the paper FUNCTION, 2023, 4(3): zqad018

description: Data of the published paper for FUNCTION, 2023, 4(3): zqad018
DOI: 10.5281/zenodo.10288229
title: Assessing Challenges to Virtual Education (FACVE) in Emergency Remote Teaching Situations
DOI: 10.5281/zenodo.10288230
title: Assessing Challenges to Virtual Education (FACVE) in Emergency Remote Teaching Situations
DOI: 10.5281/zenodo.7826228
title: Climate-driven spatial and temporal patterns in peatland pool biogeochemistry

description: This archive entry contains the original datasets used in the article "Climate-driven spatial and temporal patterns in peatland pool biogeochemistry" as CSV files. The Global_dataset.csv file is a synthesis of the morphological, biogeochemical and climate properties of peatland pools from eastern Canada, southern Patagonia, and the United Kingdom and comprises a total of 240 observations. The GPB_full_dataset.csv file includes the morphological and biogeochemical properties of nine pools of a peatland of eastern Canada that have been sampled regularly over the 2016 to 2021 summers. The GPB_aggregated_dataset.csv file shows the average pool biogeochemical and climate properties of the same peatland of eastern Canada, for 50-day windows between day of year 150 to 300. Statistical analyses shown in the "Climate-driven spatial and temporal patterns in peatland pool biogeochemistry" article are based on the GPB_aggregated_dataset.csv dataset.
DOI: 10.5281/zenodo.7826229
title: Climate-driven spatial and temporal patterns in peatland pool biogeochemistry

description: This archive entry contains the original datasets used in the article "Climate-driven spatial and temporal patterns in peatland pool biogeochemistry" as CSV files. The Global_dataset.csv file is a synthesis of the morphological, biogeochemical and climate properties of peatland pools from eastern Canada, southern Patagonia, and the United Kingdom and comprises a total of 240 observations. The GPB_full_dataset.csv file includes the morphological and biogeochemical properties of nine pools of a peatland of eastern Canada that have been sampled regularly over the 2016 to 2021 summers. The GPB_aggregated_dataset.csv file shows the average pool biogeochemical and climate properties of the same peatland of eastern Canada, for 50-day windows between day of year 150 to 300. Statistical analyses shown in the "Climate-driven spatial and temporal patterns in peatland pool biogeochemistry" article are based on the GPB_aggregated_dataset.csv dataset.
DOI: 10.5281/zenodo.5619484
title: Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes

description: This archive entry contains the original dataset used in the manuscript "Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes" as a CSV file (Arsenault-et-al_All.csv). The dataset is a global synthesis of the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies. It comprises a total of 12,475 observations (11,357 lakes worldwide, 827 thermokarst waterbodies from the Arctic circumpolar and the Himalaya regions and 291 peatland ponds from North America, Europe and Patagonia, from published and unpublished sources). The entry also includes subsets of the main dataset used to performed statistical analyses to compare and distinguish the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies (see file Tables_Statistical-analyses.pdf for details).


The archive entry also contains the list of references from which we built the dataset, as a TXT file.
DOI: 10.5281/zenodo.5619485
title: Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes

description: This archive entry contains the original dataset used in the manuscript "Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes" as a CSV file. The dataset is a global synthesis of the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies. It comprises a total of 12,230 observations (11,252 lakes worldwide, 692 thermokarst waterbodies from the Arctic circumpolar and the Himalaya regions and 286 peatland ponds from North America, Europe and Patagonia, from published and unpublished sources). The archive entry also contains the list of references from which we built the dataset, as a TXT file.
DOI: 10.5281/zenodo.6226422
title: Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes

description: This archive entry contains the original dataset used in the manuscript "Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes" as a CSV file. The dataset is a global synthesis of the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies. It comprises a total of 12,475 observations (11,357 lakes worldwide, 827 thermokarst waterbodies from the Arctic circumpolar and the Himalaya regions and 291 peatland ponds from North America, Europe and Patagonia, from published and unpublished sources). The archive entry also contains the list of references from which we built the dataset, as a TXT file.
DOI: 10.5281/zenodo.6380018
title: Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes

description: This archive entry contains the original dataset used in the manuscript "Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes" as a CSV file (Arsenault-et-al_All.csv). The dataset is a global synthesis of the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies. It comprises a total of 12,475 observations (11,357 lakes worldwide, 827 thermokarst waterbodies from the Arctic circumpolar and the Himalaya regions and 291 peatland ponds from North America, Europe and Patagonia, from published and unpublished sources). The entry also includes subsets of the main dataset used to performed statistical analyses to compare and distinguish the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies (see file Tables_Statistical-analyses.pdf for details). The archive entry also contains the list of references from which we built the dataset, as a TXT file.
DOI: 10.5281/zenodo.6562465
title: Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes

description: This archive entry contains the original dataset used in the manuscript "Biogeochemical distinctiveness of peatland ponds, thermokarst waterbodies and lakes" as a CSV file (Arsenault-et-al_All.csv). The dataset is a global synthesis of the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies. It comprises a total of 12,475 observations (11,357 lakes worldwide, 827 thermokarst waterbodies from the Arctic circumpolar and the Himalaya regions and 291 peatland ponds from North America, Europe and Patagonia, from published and unpublished sources). The entry also includes subsets of the main dataset used to performed statistical analyses to compare and distinguish the biogeochemical properties of lakes, peatland ponds and thermokarst waterbodies (see file Tables_Statistical-analyses.pdf for details).


The archive entry also contains the list of references from which we built the dataset, as a TXT file.
DOI: 10.25345/c5j09wf8b
title: MassIVE MSV000093612 - Protein Kinase C alpha (PRKCA) CRISPR in HCC827 Phospho-proteomics
title: Cell Line: HCC827 Empty Vector and PKRCA CRISPR Label: Labeled ARG10LYS8 (Kit: Cat# A33973) File Description: P1, P2, P3 are the independent biological replicates.
DOI: 10.34740/kaggle/dsv/7157231
title: economic_Trinidad_Tobago
DOI: 10.13020/6n0x-gk61
title: Data for Thermodynamics and morphology of linear multiblock copolymers at homopolymer interfaces

description: Block copolymers at homopolymer interfaces are poised to play a critical role in the compatibilization of mixed plastic waste, an area of growing importance as the rate of plastic accumulation rapidly increases. Using molecular dynamics simulations of Kremerâ€“Grest polymer chains, we have investigated how the number of blocks and block degree of polymerization in a linear multiblock copolymer impacts the interface thermodynamics of strongly segregated homopolymer blends, which is key to effective compatibilization. The second virial coefficient reveals that interface thermodynamics are more sensitive to block degree of polymerization than to the number of blocks. Moreover, we identify a strong correlation between surface pressure (reduction of interfacial tension) and the spatial uniformity of block junctions on the interface, yielding a morphological framework for interpreting the role of compatibilizer architecture (number of blocks) and block degree of polymerization. These results imply that, especially at high interfacial loading, the choice of architecture of a linear multiblock copolymer compatibilizing surfactant does not greatly affect the modification of interfacial tension.
description: The data archived here includes all results from the post-processing analysis of molecular dynamics simulations referenced in the attached paper.
DOI: 10.6084/m9.figshare.24777321
title: MD simulation files

description: free MD simulation files of atomic coordinates in gromacs format (*.gro) taken from each of systems 1-8 in Supplementary Table 3 at t = 0 (initial) and t = 1 microseconds (final).
DOI: 10.5517/ccdc.csd.cc2fvv27
title: CCDC 2260119: Experimental Crystal Structure Determination

description: Related Article: Lei Huang, Yan Wang, Xin Liu, Shi-Kai Tian|2023|Org.Biomol.Chem.|21|9321|doi:10.1039/D3OB01835K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fvv7d
title: CCDC 2260124: Experimental Crystal Structure Determination

description: Related Article: Lei Huang, Yan Wang, Xin Liu, Shi-Kai Tian|2023|Org.Biomol.Chem.|21|9321|doi:10.1039/D3OB01835K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g7m2f
title: CCDC 2271434: Experimental Crystal Structure Determination

description: Related Article: Abhijit Chatterjee, Joy Chatterjee, Subrahmanyam Sappati, Riteeka Tanwar, Madan D. Ambhore, Habibul Arfin, Rintu M. Umesh, Mayurika Lahiri, Pankaj Mandal, Partha Hazra|2023|Chemical Science|14|13832|doi:10.1039/D3SC04280D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10206839
title: Dereplicated vOTUs recovered from a viromics extraction buffer chemistry experiment

description: Database of de-replicated viral operational taxonomic units recovered from a viromics (viral-size fraction metagenomics) buffer chemistry experiment.
DOI: 10.5281/zenodo.10206840
title: Dereplicated vOTUs recovered from a viromics extraction buffer chemistry experiment

description: Database of de-replicated viral operational taxonomic units recovered from a viromics (viral-size fraction metagenomics) buffer chemistry experiment.
DOI: 10.22003/xfel.eu-data-004556-00
title: Ultrasound-activatable droplets for brain tumor therapy
DOI: 10.22003/xfel.eu-data-006718-00
title: Bragg magnifier as dark field imaging detector
DOI: 10.5281/zenodo.10308791
title: Directed percolation and puff jamming near the transition to pipe turbulence

description: The onset of turbulence in pipe flow has defied detailed understanding ever since Reynolds' first observations revealed the spatially-heterogeneous nature of the transition. While recent theoretical studies and experiments in simpler, shear-driven flows suggest that the onset of turbulence is a directed percolation non-equilibrium phase transition, whether these findings are generic and apply also to open or pressure-driven flows is unknown. In pipe flow, the extremely long time scales near the transition make direct observations of critical behavior virtually impossible. Here, we circumvent these limitations by experimentally characterizing all pairwise interactions between localized patches of turbulence ("puffs"), and using these interactions as input to renormalization group and computer simulations of minimal models that extrapolate to long length and time scales. We show that the universality class of the transition is directed percolation, from which emerges a jammed phase of puffs above the critical point. The stronger interactions in the jamming regime enable us to explicitly measure the turbulent fraction and confirm model predictions. Our work shows that directed percolation scaling applies beyond simple closed shear flows, and underscores how statistical mechanics can lead to profound, quantitative and predictive insights on turbulent flows and their phases.
DOI: 10.5281/zenodo.10308914
title: Supplementary information to "ScRNA-IMM: Single-cell RNA-Seq Imputation method using Mean/Median Imputation"
DOI: 10.5281/zenodo.10308915
title: Supplementary information to "ScRNA-IMM: Single-cell RNA-Seq Imputation method using Mean/Median Imputation"
DOI: 10.22002/17qbh-75s62
title: Data for: Exploring uranium isotopes in shark teeth as a paleo-redox proxy
DOI: 10.5281/zenodo.10308884
title: Supporting data sets for "Evolutionary analyses of IDRs reveal widespread signals of conservation"

description: S1: Disorder and order regions of alignments computed from AUCPreD scores which passed the 30 residue minimum length and phylogenetic diversity filters. The "ppids" column indicates the sequences in each alignment which were not excluded due these and other filtering criteria. See the main text methods for more details.S2: Substitution model parameters fit to meta-alignments derived from disorder and order filtered regions.S3: Features of segments in all regions.S4: Contrasts and root estimates of disorder scores in filtered regions computed with Felsenstein's contrasts algorithm.S5: Contrasts and root estimates of features in filtered regions computed with Felsenstein's contrasts algorithm.S6: Estimated BM and OU model parameters of simulated data.S7: Estimated BM and OU model parameters of features in filtered regions computed with maximum likelihood.
DOI: 10.5281/zenodo.10308885
title: Supporting data sets for "Evolutionary analyses of IDRs reveal widespread signals of conservation"

description: S1: Disorder and order regions of alignments computed from AUCPreD scores which passed the 30 residue minimum length and phylogenetic diversity filters. The "ppids" column indicates the sequences in each alignment which were not excluded due these and other filtering criteria. See the main text methods for more details.S2: Substitution model parameters fit to meta-alignments derived from disorder and order filtered regions.S3: Features of segments in all regions.S4: Contrasts and root estimates of disorder scores in filtered regions computed with Felsenstein's contrasts algorithm.S5: Contrasts and root estimates of features in filtered regions computed with Felsenstein's contrasts algorithm.S6: Estimated BM and OU model parameters of simulated data.S7: Estimated BM and OU model parameters of features in filtered regions computed with maximum likelihood.
DOI: 10.5281/zenodo.10309134
title: The impact of cognitive distraction on gustatory perception in volunteers with obesity
DOI: 10.5281/zenodo.10309135
title: The impact of cognitive distraction on gustatory perception in volunteers with obesity
DOI: 10.6084/m9.figshare.24777396
title: CT simulation of MR-Linac patients without the use of a CT table overlay

description: While current MR-Linac (MRL) treatment workflows utilize a large table overlay during CT simulation to convert indexing between the two machines, we developed a look-up-table (LUT) as an alternative approach. After populating the LUT, index conversion factors were verified at three separate table locations. The resultant root-mean-square isocenter shifts on the MRL were 0.04/0.08 cm, 0.08/0.07 cm, and 0.09/0.08 cm with/without using the table overlay during simulation in the lateral, longitudinal, and vertical directions, respectively, which is within registration tolerance. Clinical implementation of the LUT has resulted in a more efficient MRL treatment workflow while maintaining accurate patient setup.
DOI: 10.6084/m9.figshare.24777396.v1
title: CT simulation of MR-Linac patients without the use of a CT table overlay

description: While current MR-Linac (MRL) treatment workflows utilize a large table overlay during CT simulation to convert indexing between the two machines, we developed a look-up-table (LUT) as an alternative approach. After populating the LUT, index conversion factors were verified at three separate table locations. The resultant root-mean-square isocenter shifts on the MRL were 0.04/0.08 cm, 0.08/0.07 cm, and 0.09/0.08 cm with/without using the table overlay during simulation in the lateral, longitudinal, and vertical directions, respectively, which is within registration tolerance. Clinical implementation of the LUT has resulted in a more efficient MRL treatment workflow while maintaining accurate patient setup.
DOI: 10.5281/zenodo.10231877
title: Dynamics of activation in the voltage-sensing domain of Ci-VSP

description: This dataset contains unbiased molecular dynamics trajectories, stripped of water and lipid coordinates due to size constraints. It also contains full initial and final structures for all trajectories.
Description of the data and file structure
The data are deposited as a .tar.gz file: it can be unpacked by running tar -xzvf traj-data.tar.gz.
The trajectories are organized into two groups (group1 and group2), each containing a folder with stripped_trajs as .xtc files, as well as the full starting and ending coordinates (with waters and lipids) as intial_structs and final_structs. The models for the down--, down, up, and up+ states are in models.
The parameter file is civsd-amber-top.parm7 and the topology files with and withoutthe waters/lipids are civsd.psf and civsd-pro.psf
Sharing/Access information
Derived data (collective variables computed from the raw trajectories) are available as supplementary information to the accompanying publication.
Code/Software
Analysis of the trajectories can be performed using the MDAnalysis, MDTraj, PyEMMA, scikit-learn, and VMD, softwares along with custom codes written in Python/Jupyter notebooks and tcl. Custom codes are available at https://github.com/dinner-group/ci-vsd.