cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fue3gm
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria setigera",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018467-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkdwsz
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Digitaria setigera",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 83 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018469-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqskvp
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Charybdis orientalis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018470-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13176323
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.pw7fnj
title: Occurrence Download

description: A dataset containing 1436704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "GadmGid is ZAF.5.5_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1436704 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018439-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvt6bd
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Himmelmoor"
 ]
}

 The dataset includes 226 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007587-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk4bdz
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 137 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038790-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9vk99
title: Occurrence Download

description: A dataset containing 381458862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 381458862 records from 12275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047206-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13020/kxvq-0720
title: Data for manuscript entitled "The dynamic conformational ensemble of dsDNA-bound Mre11-Rad50 supports a structure-function model of its catalytic cycle"

description: The MRE11-RAD50-NBS1/Xrs2 (MRN/X) protein complex has essential roles in the repair of damaged DNA. The current understanding of the conformational landscape of the core MR complex comes from a multitude of structural studies. However, given the heterogeneous nature of these structures, we suspected that a number of conformational states may still be unaccounted for. Using methyl-based NMR experiments on P. furiosus MR, we determined an ensemble of distinct conformations of MR bound to DNA, consistent with the highly dynamic nature of the MR-DNA complex. Some structural models represented previously solved structures, but others have not been observed before. Interrogation of these structures via in vitro activity assays on MR mutants revealed an unexpected, striking correlation between the nuclease activity of Mre11 and the magnitude of DNA-stimulated ATP hydrolysis by Rad50. The data support a model for MR activity where DNA-stimulated ATP hydrolysis unlocks Rad50 to provide access to the Mre11 active sites and further demonstrate how a heterogeneous ensemble of conformations can be used to coordinate various functions to direct biological outcomes.
description: NMR Spectra and CCPN Analysis Projects, Prism files for activity assay data,
DOI: 10.15468/dl.4gpxmf
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arenicolides branchialis (Audouin & Milne Edwards, 1833)"
 ]
}

 The dataset includes 121 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012633-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17596/0004021
title: The Kuroshio transport time series estimated form satellite altimeter data

description: Detailed time series of transport of Kuroshio and Kuroshio recirculation along subsatellite track of satellite altimeter south of Japan. Horizontal distribution of integrated transport from the coast estimated from a combination of altimeter data, shipboard hydrographic data, and tide gauge data along the track, produced every 10 days for a period of more than 30 years since September 1992.
DOI: 10.17632/2r47yhs5hz.1
title: Italian first league clubs_2009-2018

description: The sample contains the data for 10 seasons in Serie A from 2009/10 to 2018/19. We have used some financial data that are based on the financial statements of the teams at the end of the year. All our variables are related to fiscal year, with the exception of the number of points. All the monetary variables in EUR were reduced to constant 2010 prices by using the implicit GDP deflator. The data are taken from the database AIDA provided by Bureau van Dijk. AIDA collects and classifies data from Italian firms that are legally obliged to submit their annual balance sheet in a public “company register” (according to the art. 2435 of the Italian civil code).
DOI: 10.17632/xt7mtmn393.1
title: Magma ocean viscosity

description: Data Set S1
DOI: 10.5066/p9lpn3yy
title: Estuarine drainage area boundaries for the conterminous United States

description: To quantify the potential for landward migration at the estuary level, we developed a geospatial dataset for the conterminous United States (CONUS) that identifies the boundaries for estuarine drainage areas. Nine estuarine drainage areas in south Florida were delineated using data developed by the South Florida Water Management District (SFWMD 2018). For the rest of CONUS, we used information contained within the National Fish Habitat Action Plan (NFHAP) - Coastal Spatial Framework (CSF) (National Centers for Coastal Ocean Science 2021). The original NFHAP-CSF data included 612 drainage areas, which were too many for our purposes. Therefore, we merged smaller drainage areas with larger, adjacent drainage areas to reduce the number to 166, which includes 62, 39, and 65 estuarine drainage areas along the Pacific, Gulf of Mexico, and Atlantic coasts, respectively. To ensure that all coastal ecosystems were included, the near-coast estuarine drainage area boundaries were expanded oceanward with a 25-km buffer.
DOI: 10.5281/zenodo.12104162
title: AdsMT: Multi-modal Transformer for Predicting Global Minimum Adsorption Energy

description: We built three Global Minimum Adsorption Energy (GMAE) benchmark datasets named OCD-GMAE, Alloy-GMAE and FG-GMAE from OC20-Dense, Catalysis Hub, and `functional groups' (FG)-dataset datasets through strict data cleaning, and each data point represents a unique combination of catalyst surface and adsorbate. These new benchmark datasets can be beneficial for future ML study on GMAE prediction.

In addition, a similar data cleaning procedure was employed on the OC20 dataset to create a new dataset named OC20-LMAE, which comprises surface/adsorbate pairings along with their local minimum adsorption energies (LMAE). The OC20-LMAE dataset contains 363,937 data points and serves as an effective resource for model pretraining.
DOI: 10.5281/zenodo.13772527
title: The impact of 11 May 2024 super geomagnetic storm on the plasma distribution over the Indian equatorial/low latitude ionospheric region

description: The  file contains the data set and the software  for the generation the plots used in the manuscript " The impact of 11 May 2024 super geomagnetic storm on the plasma distribution over the Indian equatorial/low latitude ionospheric region".
DOI: 10.5281/zenodo.14016513
title: Dataset for "Induced Polarization of Clay under Freeze-Thaw Cycling and Desiccation Processes: Effect of Surface Cracking Propagation"

description: This dataset supports the research study "Induced Polarization of Clay under Freeze-Thaw Cycling and Desiccation Processes: Effect of Surface Cracking Propagation" by H. L. Luo, A. Jost, J. Thiesson, A. Mendieta, E. Léger, & D. Jougnot.We measured of cracking and electrical properties of the illite sample during freeze-thaw cycling and desiccation processes by controlling the environmental chamber and monitoring the sample temperature. We provide the experimental data of water evaporation and cracking behavior of the illite sample (i.e., Gravimetric water content, water evaporation rate, and surface crack ratio). Additionally, we offer complex conductivity data (i.e., in-phase and quadrature conductivities) for the soil samples at various temperatures and gravimetric water contents.

Each file has its header, describing each column.
DOI: 10.5281/zenodo.14732295
title: Data for "Microsatellite-based real-time quantum key distribution"

description: This dataset is for research article "Microsatellite-based real-time quantum key distribution".
DOI: 10.5281/zenodo.14744033
title: Climate and pedogenesis exert divergent controls on dissolved organic matter during long-term ecosystem development

description: Data for dissolved soil organic matter from Jurien Bay and Warren chronosequences in Western Australia
DOI: 10.5281/zenodo.14779698
title: Data - Effect of counter-phase pump modulation of phase-sensitive amplifiers noise performance and SBS suppression

description: This dataset contains measurement data and processing code for the results published in "Effect of counter-phase pump modulation of phase-sensitive amplifiers noise performance and SBS suppression". Raw measurement batches from the BER-measurement can be made available upon request, at ruwan. udayanga@chalmers.se.

This work was funded by the Swedish Research Council (grant VR-2015-00535).
DOI: 10.5281/zenodo.4555511
title: Impact of Coral Growth on Geochemistry: Lessons from the Galapagos Islands

description: These datasets include trace element (Sr/Ca, Mg/Ca, and partial Ba/Ca) and coral growth metrics (skeletal density, annual extension rate, and annual calcification rate) for four coral records from Wolf Island, Galapagos: WLF03, WLF04, WLF05, and WLF10. Trace metal and coral skeletal density data are given after interpolating to monthly resolution, and, as in the publication, data are not averaged between overlapping transects to produce a single continuous time series. Analytical precisions are given in the metadata for each record. Trace element data were corrected to an internal coral standard, and the inter-laboratory standard JCp-1 was measured for comparison. WLF04 and WLF05 are cored from the same subfossil coral colony and U/Th dated; WLF10 and WLF03 were collected from different live coral colonies. Both monthly data (trace elements, density) and annual data (trace elements, density, extension, and calcification) are given, where “annual” is defined as the time between successive March tie points, determined from Sr/Ca minima (inferred SST maxima). WLF03 and WLF10 Sr/Ca were previously published in Jimenez et al. (2018) (https://doi.org/10.1002/2017GL075323), and the data here differ slightly from the prior publication: these data are presented in monthly resolution (as opposed to bimonthly resolution), are corrected to updated known values of the internal coral standard, and are not averaged between overlapping transects. Additionally, colony growth data (density, extension, and calcification) are new in this study.
DOI: 10.5281/zenodo.7719295
title: TrypTag: Genome-wide subcellular protein localisation in Trypanosoma brucei.

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <em>Trypanosoma brucei</em> by endogenous tagging with mNeonGreen (mNG). This master deposition includes a summary of the localisations, scripts, code and primer sequences used to build the TrypTag database, provided in the master directory structure. It does not include any microscopy data, which are spread over multiple Zenodo DOIs. Instead, this deposition and the raw and processed data directories include an index linking gene IDs to each Zenodo DOI. Data can also be browsed at TrypTag.org. If you use this data resource please cite Billington <em>et al.</em> 2023 <em>Nature Microbiology </em>(doi:10.1038/s41564-022-01295-6). We recommend including this citation in the results or methods if TrypTag was used as part of a discovery process. If directly using TrypTag images, please also indicate in the figure legend or similar which images are from TrypTag. If carrying out a large-scale data analysis, please also cite this Zenodo deposition. Data can be mined via the cellular localization imaging or cellular component GO term searches at the genome database TriTrypDB.org (part of VEuPathDB). If you do, please also cite the genome database. You may also find the following papers informative: Dean <em>et al.</em> 2016 <em>Trends in Parasitology</em> (doi:10.1016/j.pt.2016.10.009), which describes the original project aims and workflow. Halliday <em>et al.</em> 2019 <em>Molecular and Biochemical Parasitology</em> (doi:10.1016/j.molbiopara.2018.12.003), which describes the localisation ontology with example images and comparison to <em>Leishmania</em>.
description: Add ontology jsons as files.
DOI: 10.5281/zenodo.7940749
title: Trypanosoma brucei predicted protein structures, part 1 of 2

description: AlphaFold2-predicted protein structures for the Trypanosoma brucei (TREU927) proteome, predicted using  input multiple sequence alignments optimised for the Discoba lineage in which T. brucei sits. The structure prediction methodology was exactly as described in doi:10.1371/journal.pone.0259871.


This deposition contains part 1 of 2. To get the full dataset, also download TbruceiTREU927_part2.zip from 10.5281/zenodo.7948119.


Data are organised with one directory per T. brucei TREU927 gene ID (eg. Tb927.1.3600). Within each directory you will find:


<gene id>_predmap.png A left to right representation of the linear protein sequence with one pixel per amino acid. Each horizontal bar represents one structure prediction, colour coded by pLDDT. For small proteins, there will likely be one prediction of the full-length protein. For large proteins, there may be many overlapping predictions.


<gene id>_<start aa>-<end_aa> A directory containing structure prediction of that gene ID between the start and end amino acid. Within this directory you will find:


<gene id>_<start aa>-<end_aa>.json The full data in a JSON format, including linear protein sequence and metadata, along with 5 predicted protein structures ranked from best to worst overall pAE. For each predicted protein structure, the structure (PDB format), its pLDDT per residue and pairwise pAE.


<gene id>_<start aa>-<end_aa>_1.pdb The PDB file of the highest ranked structure.


<gene id>_<start aa>-<end_aa>_1-pae.png A plot of pAE, for the highest ranked structure, at one pixel per amino acid. Shade of green represents pAE for that amino acid pair, see below.


<gene id>_<start aa>-<end_aa>_1-plddt.png A plot of pLDDT, for the highest ranked structure, at one horizontal pixel per amino acid. Bar height and colour both represent pLDDT for that amino acid, see below.


PDB structure and pAE/pLDDT of lower ranked models are embedded in the JSON file.


All pLDDT and pAE plots use the colour scales used by https://alphafold.ebi.ac.uk/: For pLDDT: > 90 (dark blue), 90 > pLDDT > 70 (light blue), 70 > pLDDT > 50 (orange), < 50 (yellow) discontinuous. For pAE: 0 (white angstrom) to dark green (32 angstrom) continuous.


If you use this resource, please cite this Zenodo deposition and doi:10.1371/journal.pone.0259871.
description: No change to data. Documentation and part 1/2 cross-linking corrections.
DOI: 10.5676/dwd_gpcc/fd_m_v2022_025
title: GPCC Full Data Monthly Version 2022 at 0.25°: Monthly Land-Surface Precipitation from Rain-Gauges built on GTS-based and Historic Data
title: Globally Gridded Monthly Totals

description: This is the centennial GPCC Full Data Monthly Product of monthly global land-surface precipitation based on the ~86,000 stations world-wide that feature record durations of 10 years or longer. The data coverage per month varies from ~20,000 (previous version 15,000) to more than 52,000 stations. The Full Data Monthly Product will be updated at irregular time intervals subsequent to significant data base improvements. This product contains the monthly totals on a regular grid with a spatial resolution of 0.25° x 0.25°, 0.5° x 0.5°, 1.0° x 1.0°, and 2.5° x 2.5° latitude by longitude. Precipitation anomalies at the stations are interpolated and then superimposed on the GPCC Climatology V2022 in the corresponding resolution (DOIs: 10.5676/DWD_GPCC/Clim_M_V2022_025, 10.5676/DWD_GPCC/Clim_M_V2022_050, 10.5676/DWD_GPCC/Clim_M_V2022_100, and 10.5676/DWD_GPCC/Clim_M_V2022_250). The temporal coverage of the dataset ranges from January 1891 until December 2020.

The GPCC Full Data Monthly Product is the most accurate in situ precipitation reanalysis data set of GPCC. Moreover it supports regional climate monitoring, model validation, climate variability analysis and water resources assessment studies.
description: General user recommendations:
Users are referred to following gridded Global Precipitation Climate Centre (GPCC) products:

GPCC Climatology 1951-2000 (GPCC_Clim) with high representativeness, for application as a reference, and for utilization of the anomaly interpolation method.

GPCC Full Data Monthly Product (GPCC_FD) with high accuracy, for, e.g., verification of models, or for analysis of historical global precipitation, or for research concerning the global water cycle, e.g., teleconnection analyses.

GPCC Full Data Daily Product (GPCC_FD_D) is recommended to be used when the daily precipitation information is of highest importance, e.g. for analyses of extreme events and related statistics at daily resolution.

GPCC HOMPRA-Europe (HOMPRA-Europe) with homogenized precipitation data, suitable for trend analyses.

GPCC Monitoring Product (GPCC_MP) with high availability and reasonable timeliness, for applications like calibration of satellite data, or early annual reporting.

GPCC First Guess Monthly Product (GPCC_FG) with high timeliness, to be applied for, e.g., drought monitoring.

GPCC First Guess Daily Product (GPCC_FG_D) with high timeliness, to be applied for, e.g., drought monitoring.

GPCC Drought Index Product (GPCC_DI_M) with high timeliness, to be applied for, e.g., drought monitoring.

Please notice also the (GPCC Download Gate) with the current versions of all GPCC datasets and additional informations.
DOI: 10.6069/cfcy-wa51
title: Global Burden of Disease Study 2019 (GBD 2019) Covariates 1980-2019

description: "The Global Burden of Disease Study 2019 (GBD 2019), coordinated by the Institute for Health Metrics and Evaluation (IHME), estimated the burden of diseases, injuries, and risk factors for 204 countries and territories and selected subnational locations.

Covariates, which are independent variables with a positive or negative relationship to GBD diseases and conditions, are used to inform the estimation process in models in all components and stages of the GBD study. Types of covariates used include socioeconomic, demographic, health system access, climate, and food consumption. This dataset contains data for 771 covariates for 1980-2019 used in the GBD 2019 study.

Get Data Files

For additional GBD results and resources, visit the GBD 2019 Data Resources page."
DOI: 10.6084/m9.figshare.27964467
title: Source data of NCOMMS-23-31502

description: Date of NCOMMS-23-31502
DOI: 10.6084/m9.figshare.28398374
title: Impact of a national AI technology programme on patient clinical outcomes and the health system: A population based observational cohort study of CT coronary angiography and FFR-CT.

description: SQL code and flow algorithms with logic for defining clinical events and demographics from NHS digitals hospital episode statistics databases.
DOI: 10.6084/m9.figshare.28451051
title: Supplementary Material for: Benign recurrent intrahepatic cholestasis type 1 with novel gene mutation complicated by distal renal tubular acidosis: a case report

description: Introduction: Benign recurrent intrahepatic cholestasis (BRIC) is a rare autosomal recessive inherited disorder characterized by intermittent jaundice episodes. Case presentation: We report a 25-year-old male patient with numerous hospitalizations for jaundice. The diagnosis of BRIC type 1 was established by liver biopsy, genetic analysis, and the exclusion of alternative etiologies of cholestasis. A novel missense heterozygous variant was identified in the ATP8B1 gene (c.2081T&gt;A). The acute cholestatic attack, along with associated complications such as distal renal tubular acidosis and acute pancreatitis, were successfully managed with plasmapheresis and rifampicin. Conclusion: Novel mutations that differ from those documented in the literature in combination with renal tubular acidosis may enhance our comprehension of this topic.
DOI: 10.6084/m9.figshare.28466042
title: Chromosome-level genome assembly and annotation of the sharpsnout seabream (<i>Diplodus puntazzo</i>)

description: Summary Nuclear and mitochondrion genome annotations
DOI: 10.6084/m9.figshare.28603286
title: Extreme rainfall increased soil nitrous oxide emissions

description: During two experimental years, indices of meteorological conditions (air temperature and precipitation) during the experimental periods and soil carbon and nitrogen contents and properties. More importantly, the fluxes of soil nitrous oxide and carbon dioxide from two croplands with different carbon availability were included. The abundance of the marker genes of soil nitrification and denitrification in soil during the growing season and the waterlogging period were also measured. The results of the gross nitrification and mineralization of two croplands were determined with laboratory 15N tracing experiment. In addition, we compiled data of nitrous oxide emissions from the black soils of the studied region.