cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.np7n3
title: Data from: A single 17D Yellow Fever vaccination provides lifelong immunity; characterization of Yellow-Fever-specific neutralizing antibody and T-cell responses after vaccination

description: Introduction: Prompted by recent amendments of Yellow Fever (YF)
 vaccination guidelines from boost to single vaccination strategy and the
 paucity of clinical data to support this adjustment, we used the profile
 of the YF-specific CD8+ T-cell subset profiles after primary vaccination
 and neutralizing antibodies as a proxy for potentially longer lasting
 immunity. Methods and Findings: PBMCs and serum were collected in six
 individuals on days 0, 3, 5, 12, 28 and 180, and in 99 individuals
 &gt;10 years after YF-vaccination. Phenotypic characteristics of YF-
 tetramer+ CD8+ T-cells were determined using class I tetramers. Antibody
 responses were measured using a standardized plaque reduction
 neutralization test (PRNT). Also, characteristics of YF-tetramer positive
 CD8+ T-cells were compared between individuals who had received a primary-
 and a booster vaccination. YF-tetramer+ CD8+ T-cells were detectable on
 day 12 (median tetramer+ cells as percentage of CD8+ T-cells 0.2%, range
 0.07–3.1%). On day 180, these cells were still present (median 0.06%,
 range 0.02–0.78%). The phenotype of YF-tetramer positive CD8+ T-cells
 shifted from acute phase effector cells on day 12, to late differentiated
 or effector memory phenotype (CD45RA-/+CD27-) on day 28. Two subsets of
 YF-tetramer positive T-cells (CD45RA+CD27- and CD45RA+CD27+) persisted
 until day 180. Within all phenotypic subsets, the T-bet: Eomes ratio
 tended to be high on day 28 after vaccination and shifted towards
 predominant Eomes expression on day 180 (median 6.0 (day 28) vs. 2.2 (day
 180) p = 0.0625), suggestive of imprinting compatible with long-lived
 memory properties. YF-tetramer positive CD8+ T-cells were detectable up to
 18 years post vaccination, YF-specific antibodies were detectable up to 40
 years after single vaccination. Booster vaccination did not increase
 titers of YF-specific antibodies (mean 12.5 vs. 13.1, p = 0.583), nor
 induce frequencies or alter phenotypes of YF-tetramer+ CD8+ T-cells.
 Conclusion: The presence of a functionally competent YF-specific memory
 T-cell pool 18 years and sufficient titers of neutralizing antibodies
 35–40 years after first vaccination suggest that single vaccination may be
 sufficient to provide long-term immunity.
description: DataYETI10The data are percentages of Tetramer+ YFV-specific CD8+ T cells prospectively in primary vaccinated individuals as well as in primo vs. boosted individuals, and the antibodies for all volunteers in IU/mL.
DOI: 10.5061/dryad.61649
title: Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison

description: To fight infectious diseases, host immune defences are employed at
 multiple levels. Sanitary behaviour, such as pathogen avoidance and
 removal, acts as a first line of defence to prevent infection [1] before
 activation of the physiological immune system. Insect societies have
 evolved a wide range of collective hygiene measures and intensive health
 care towards pathogen-exposed group members [2]. One of the most common
 behaviours is allogrooming, in which nestmates remove infectious particles
 from the body surfaces of exposed individuals [3]. Here we show that, in
 invasive garden ants, grooming of fungus-exposed brood is effective beyond
 the sheer mechanical removal of fungal conidiospores as it also includes
 chemical disinfection through the application of poison produced by the
 ants themselves. Formic acid is the main active component of the poison.
 It inhibits fungal growth of conidiospores remaining on the brood surface
 after grooming and also those collected in the mouth of the grooming ant.
 This dual function is achieved by uptake of the poison droplet into the
 mouth through acidopore self-grooming and subsequent application onto the
 infectious brood via brood grooming. This extraordinary behaviour extends
 current understanding of grooming and the establishment of social immunity
 in insect societies.
description: TRAGUST_Behavioural_dataTRAGUST_In-vitroConidiosporeGermination_dataTRAGUST_In-vivoConidiosporeNumberGermination_dataTRAGUST_pHpaper_dataTRAGUST_SPME_data
DOI: 10.5061/dryad.tg706dv
title: Data from: Assessing impact of exogenous features on biotic phenomena in the presence of strong spatial dependence: a lake sturgeon case study in natural stream settings

description: Modeling spatially explicit data provides a powerful approach to identify
 the effects of exogenous features associated with biological processes,
 including recruitment of stream fishes. However, the complex spatial and
 temporal dynamics of the stream and the species' reproductive and
 early life stage behaviors present challenges to drawing valid inference
 using traditional regression models. In these settings it is often
 difficult to ensure the spatial independence among model residuals---a key
 assumption that must be met to ensure valid inference. We present
 statistical models capable of capturing complex residual anisotropic
 patterns through the addition of spatial random effects within an
 inferential framework that acknowledges uncertainty in the data and
 parameters. Proposed models are used to explore the impact of
 environmental variables on Lake sturgeon (Acipenser fulvescens)
 reproduction, particularly questions about patterns in egg deposition. Our
 results demonstrate the need to apply valid statistical methods to
 identify relationships between response variables, e.g., egg counts,
 across locations, and environmental covariates in the presence of strong
 and anisotropic autocorrelation in stream systems. The models may be
 applied to other settings where gamete distribution or, more generally,
 other biotic phenomena may be associated with spatially dynamic and
 anisotropic processes.
description: site1Site 1 -- lake sturgeon
 population that spawn in the Upper Black River, MI.site2Site 2 -- lake sturgeon
 population that spawn in the Upper Black River, MI.site3Site 3 -- lake sturgeon
 population that spawn in the Upper Black River, MI.site4Site 4 -- lake sturgeon
 population that spawn in the Upper Black River, MI.
DOI: 10.5061/dryad.2873b
title: Data from: Conserved ontogeny of color pattern leads to the misdiagnosis of scincid lizards of the Plestiodon skiltonianus species complex

description: [No abstract entered]
description: Sequence alignment for
 the mitchondrial ND4 geneNexus file containing
 the sequence alignment for the mitochondrial ND4 haplotypes presented in
 this study. Sequence labels are field tag identifiers for individual,
 field-collected specimens. Georeference points for each specimen are
 available upon request to J. Q. Richmond (jrichmond@usgs.gov). Nucleotide
 positions 1-1341 encode the NADH4 gene; 1342 - 1411 encodes tHIS;
 1412-1476 encodes tSER; and 1477-1486 partially encides tLEU. Gene
 assignments were based on an alignment with the full mitochondrial genome
 sequence of Plestiodon egregius.Shedd and Richmond 2013
 datafile.nex
DOI: 10.5061/dryad.bk5s3
title: Data from: Is the enhanced dispersal rate seen at invasion fronts a behaviourally plastic response to encountering novel ecological conditions?

description: As a population expands into novel areas (as occurs in biological
 invasions), the range edge becomes dominated by rapidly dispersing
 individuals—thereby accelerating the rate of population spread. That
 acceleration has been attributed to evolutionary processes (natural
 selection and spatial sorting), to which we add a third complementary
 process: behavioural plasticity. Encountering environmental novelty may
 directly elicit an increased rate of dispersal. When we reciprocally
 translocated cane toads (Rhinella marina) among study sites in southern
 Australia, the transported animals massively increased dispersal rates
 relative to residents (to an extent similar to the evolved increase
 between range-core versus invasion-front toad populations in Australia).
 The responses of these translocated toads show that even range-core toads
 are capable of the long-distance dispersal rates of invasion-front
 conspecifics and suggest that rapid dispersal (rather than evolving de
 novo) has simply been expanded from facultative to constitutive
 expression.
description: Cane toad dispersal
 rateDispersal data of cane
 toads radio-tracked in Australia. Toads are grouped in four categories;
 core (Northern QLD) toads tracked in 1992-1993 and front (NT) toads
 tracked in 2006, while resident and translocated (Northern NSW) toads were
 tracked in 2015-2016. Toads in the resident and translocated categories
 are additionally grouped by transport stress treatment (low or high),
 collection site and release site. Three dispersal-relevant parameters are
 calculated for each toad: (1) mean distance per move (cumulative distances
 travelled divided by the number of times a toad changed diurnal shelter
 site); (2) mean displacement per day (total linear distance between the
 release point and final position divided by the number of days; such that
 a toad that returned to its initial release point by the end of the
 five-day period would receive a score of zero); and (3) daily rate of
 changes in shelter-sites (the number of shelter sites divided by number of
 observations).Cane toad
 dispersal.xlsx
DOI: 10.15468/dl.w8fmge
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salpiglossis sinuata",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000993-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.v2g5n
title: Data from: Resource partitioning facilitates coexistence in sympatric cetaceans in the California Current

description: 1. Resource partitioning is an important process driving habitat use and
 foraging strategies in sympatric species that potentially compete.
 Differences in foraging behavior are hypothesized to contribute to species
 coexistence by facilitating resource partitioning, but little is known on
 the multiple mechanisms for partitioning that may occur simultaneously.
 Studies are further limited in the marine environment, where the spatial
 and temporal distribution of resources is highly dynamic and subsequently
 difficult to quantify. 2. We investigated potential pathways that foraging
 behavior may facilitate resource partitioning in two of the largest
 co-occurring and closely related species on Earth, blue (Balaenoptera
 musculus) and humpback (Megaptera novaeangliae) whales. 3. We integrated
 multiple long-term datasets (line-transect surveys, whale-watching
 records, net sampling, stable isotope analysis, and remote-sensing of
 oceanographic parameters) to compare the diet, phenology, and distribution
 of the two species during their foraging periods in the highly productive
 waters of Monterey Bay, California, USA within the California Current
 Ecosystem. 4. Our long-term study reveals that blue and humpback whales
 likely facilitate sympatry by partitioning their foraging along three
 axes: trophic, temporal, and spatial. Blue whales were specialists
 foraging on krill, predictably targeting a seasonal peak in krill
 abundance, were present in the bay for an average of 4.7 months, and were
 spatially restricted at the continental shelf break. In contrast, humpback
 whales were generalists apparently feeding on a mixed diet of krill and
 fishes depending on relative abundances, were present in the bay for a
 more extended period (average of 6.6 months), and had a broader spatial
 distribution at the shelf break and inshore. 5. Ultimately, competition
 for common resources can lead to behavioral, morphological, and
 physiological character displacement between sympatric species.
 Understanding the mechanisms for species coexistence is both fundamental
 to maintaining biodiverse ecosystems, and provides insight into the
 evolutionary drivers of morphological differences in closely related
 species.
description: Fossette_Whale_Environment_Data_2017Monthly values of environmental variables and whale densities used in the manuscript.
DOI: 10.5061/dryad.r9k5f
title: Data from: The nature and distribution of affiliative behaviour during exposure to mild threat

description: Individual reactions to danger in humans are often characterized as
 antisocial and self-preservative. Yet, more than fifty years of research
 have showed that humans often seek social partners and behave pro-socially
 when confronted by danger.Yet, more than fifty years of research have
 showed that humans seek social partners and behave pro-socially when
 confronted by danger. This research has relied on post-hoc verbal reports,
 which fall short of capturing the more spontaneous reactions to danger and
 determine their social nature. Real-world responses to danger are
 difficult to observe, due to their evanescent nature. Here, we took
 advantage of a series of photographs freely accessible online and provided
 by a haunted house attraction, which enabled us to examine the more
 immediate reactions to mild threat. Regarding the nature and structure of
 affiliative behaviour and their motivational correlates, we were able to
 analyse the distribution of gripping, a behaviour that could either be
 linked to self- or other-oriented protection. We found that gripping, an
 affiliative behaviour, was common, suggestive of the social nature of
 human immediate reactions to danger. We also found that, while gripping
 behaviour is quite stable across group sizes, mutual gripping dropped
 dramatically as group size increases. The fact that mutual gripping
 disappears when the number of available partners increases suggests that
 gripping behaviour most probably reflects a self-preservative motivation.
 We also found age class differences, with younger individuals showing more
 gripping but receiving little reciprocation. Also, the most exposed
 individuals received little mutual gripping. Altogether, these results
 suggest that primary reactions to threat in humans are driven by
 affiliative tendencies serving self-preservative motives.
description: Raw
 dataRaw
 dataESM.csv
DOI: 10.5061/dryad.rr138
title: Data from: Reference data for the Ruff Figural Fluency Test stratified by age and educational level

description: The Ruff Figural Fluency Test (RFFT) was developed to avoid the
 difficulties that were encountered in earlier tests of figural fluency.
 Although the test characteristics of the RFFT seem to be good and it is a
 valuable addition to neuropsychological assessments, reference data are
 still scarce. To this aim, we required 2,404 community dwelling persons in
 Groningen, The Netherlands to perform the RFFT. All 1,651 persons with a
 complete RFFT and known educational level formed the reference sample.
 Their age ranged from 35 to 82 years and their educational level from
 primary school to university grade. Ninety-six percent of the persons were
 of Western European descent. All tests were analyzed by two independent
 examiners and subsequently three measures were calculated: number of
 unique designs, number of perseverative errors and error ratio. The main
 finding was that performance on the RFFT was dependent on age and
 educational level. This was not only observed in older persons but also in
 young and middle-aged persons. Reference data for the three RFFT measures
 are presented in groups of five years of age ranging from 35-39 years to
 75 years or older.
description: RFFT reference sample
 Groningen the NetherlandsIBM SPSS Statistics
 version 22 file including the individual data on performance on the Ruff
 Figural Fluency Test (RFFT) of 4,135 participants of the third survey of
 the Prevention of Renal and Vascular ENd-stage Disease (PREVEND) study,
 city of Groningen, the Netherlands (2003-2006). The file includes the data
 of all participants who agreed to perform the RFFT and the data of the
 Groningen Random Sample (GRS). The GRS was created because, due to its
 design, the total PREVEND cohort comprised a relatively high number of
 persons with microalbuminuria which is possibly negatively associated with
 cognitive function. The prevalence of microalbuminuria in the GRS was
 similar to the prevalence in the general population.
DOI: 10.15468/dl.yeae9g
title: Occurrence Download

description: A dataset containing 729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.18.2_1",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 729 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000994-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ss553
title: Data from: The double edged sword: the demographic consequences of the evolution of self-fertilisation

description: Phylogenies indicate that the transition from outcrossing to selfing is
 frequent, with selfing populations being more prone to extinction. The
 rates of transition to selfing and extinction, acting on different
 timescales, could explain the observed distributions of extant selfing
 species among taxa. However, phylogenetic and theoretical studies consider
 these mechanisms independently, i.e. transitions do not cause extinction.
 Here, we theoretically explore the demographic consequences of the
 evolution of self-fertilization. Deleterious mutations and mutations
 modifying the selfing rate are recurrently introduced and the number of
 offspring depends on individual fitness, allowing for a demographic
 feedback. We show that mutational meltdowns can be triggered in
 populations evolving near strict selfing. Populations having survived the
 demographic crash are more stable than ancestral outcrossing populations
 once deleterious mutations are purged. The relatively rapid time-scales in
 which extinctions occur indicate that during evolutionary transitions the
 accumulation of deleterious mutations may not be the cause of extinctions
 observed on longer time scales, which in turn could lead to the
 underestimation of transition rates from outcrossing to selfing.
description: C++ simulation
 programCode to simulate
 populations with varying size in which self-fertilisation can
 evolve.cycle.tar
DOI: 10.5061/dryad.p2q78
title: Data from: The role of morbidly obesity in the promotion of metabolic disruptions and non-alcoholic steatohepatitis by Helicobacter Pylori

description: Helicobacter pylori (HP) infection has been associated to an increased
 rate of type 2 diabetes (T2D) and liver disease through its effect on
 insulin resistance and systemic inflammation. However, results are
 inconstant and no studies exist in morbidly obese patients, in which both
 insulin resistance and inflammation coexist. Material and Methods:
 Cross-sectional study to evaluate the relationship between HP infection
 and alterations in carbohydrate metabolism, lipid profile, inflammation
 markers, and liver disease in patients awaiting for bariatric surgery. HP
 infection was histologically assessed in gastric antrum biopsy from 416
 subjects. Liver biopsy was also available in 93 subjects. Results: Both
 impaired fasting glucose and T2D were similar when comparing subjects with
 and without HP infection (24.2% vs. 22%, p=0.290 and 29.4% vs. 29.1%,
 p=0.916, respectively), with no differences between groups in the HOMA-IR,
 lipid profile neither inflammatory parameters. However, HP infection was
 higher among subjects with a BMI ? 40.0 kg/m2 in comparison with lower
 degrees of obesity (71.7% vs. 60.0%, p=0.041). In addition, subjects
 without HP infection showed higher degrees of steatosis (44.1±26.4% vs.
 32.0±20.7%, p=0.038), as well as a lower prevalence of non-alcoholic
 steatohepatitis (9.3% vs. 30.7%, p=0.023). Conclusions: In patients with
 morbid obesity, HP infection does not seem to be associated with abnormal
 carbohydrate metabolism. In addition, less advanced degrees of
 non-alcoholic fatty disease were observed. We suggest that low-grade
 inflammation that accompanies obesity mitigates the diabetogenic effect of
 HP, so the presence of obesity should be considered in studies that
 evaluate the HP metabolic effects.
description: Hpyori and
 CB
DOI: 10.5061/dryad.5qb78
title: Data from: Mate choice and the operational sex ratio: an experimental test with robotic crabs

description: The operational sex ratio (OSR) (sexually active males: receptive females)
 predicts the intensity of competition for mates. It is less clear,
 however, under what circumstances the OSR predicts the strength of sexual
 selection – that is, the extent to which variation in mating success is
 attributable to traits that increase the bearer's attractiveness
 and/or fighting ability. To establish causality experiments are required
 that manipulate OSR. Furthermore, if it is possible to control for any
 OSR-dependent changes in the chosen sex (e.g. changes in male courtship),
 we can directly test whether the OSR affects the behaviour of the choosing
 sex (e.g. female choice decisions). We conducted female mate choice
 experiments in the field using robotic models of male fiddler crabs (Uca
 mjoebergi). We used a novel design with two females tested sequentially
 per trial. As in nature, the choice of the first female to mate therefore
 affected the mates available to the next female. In general we detected
 significant sexual selection due to female choice for ‘males’ with larger
 claws. Importantly, the strength of sexual selection did not vary across
 five different OSR/density treatments. However, as the OSR decreased
 (hence the number of available males declined), females chose the ‘males’
 with the largest claws available significantly more often than expected by
 chance. Possible reasons for this mismatch between the expected and
 observed effects of the OSR on the strength of sexual selection are
 discussed.
description: Claw size choice by
 femalesdata on the OSR
 treatment, female size and chosen male claw size for all 400 two choice
 tests. Variables names are explained in the worksheet titled
 'information'.Hayes OSR paper Data For Dryad
 Submitted.xlsx