cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10288106
title: MOESM16 of Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice

description: Additional file 16: Table S9. Differentially expressed genes (DEGs) associated with phosphatidylinositol phosphate kinase activity, myosin complex, and ATP-binding processes in rice inoculated with Xanthomonas oryzae pv. oryzae (Xoo).
DOI: 10.6084/m9.figshare.10288106.v1
title: MOESM16 of Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice

description: Additional file 16: Table S9. Differentially expressed genes (DEGs) associated with phosphatidylinositol phosphate kinase activity, myosin complex, and ATP-binding processes in rice inoculated with Xanthomonas oryzae pv. oryzae (Xoo).
DOI: 10.6084/m9.figshare.10288148
title: MOESM9 of Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice

description: Additional file 9: Table S2. Details of the primers used in this study. (PDF 76 kb)
DOI: 10.6084/m9.figshare.10288148.v1
title: MOESM9 of Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice

description: Additional file 9: Table S2. Details of the primers used in this study. (PDF 76 kb)
DOI: 10.6084/m9.figshare.7666739
title: Additional file 1: of Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates

description: Table S1. Statistics of the deep sequencing data used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7666742
title: Additional file 1: of Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics

description: Table S1. Results of pathway-based analysis of the 25 traits. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.7666742.v1
title: Additional file 1: of Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics

description: Table S1. Results of pathway-based analysis of the 25 traits. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.7666751
title: Additional file 2: of Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics

description: Table S2. Significantly associated genes in the most significant pathway for each trait. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7666751.v1
title: Additional file 2: of Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics

description: Table S2. Significantly associated genes in the most significant pathway for each trait. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7666754
title: Additional file 3: of Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates

description: Table S3. A-to-I editing events located on polymorphic sites in the macaque population. (XLSX 1879 kb)
DOI: 10.6084/m9.figshare.7666763
title: Additional file 4: of Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates

description: Table S4. 54 randomly selected polyAG sites of targeted DNA sequencing. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7666763.v1
title: Additional file 4: of Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates

description: Table S4. 54 randomly selected polyAG sites of targeted DNA sequencing. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7666766
title: Additional file 4: of Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics

description: Table S3. Results of Fisherâ s Exact Test for 25 traits. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.7666766.v1
title: Additional file 4: of Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics

description: Table S3. Results of Fisherâ s Exact Test for 25 traits. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.17104000
title: Additional file 2 of Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry

description: Additional file 2: TableS1. Translation efficiency of homoeologs of A and B subgenome in tetraploid Kronos.
DOI: 10.6084/m9.figshare.17104000.v1
title: Additional file 2 of Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry

description: Additional file 2: TableS1. Translation efficiency of homoeologs of A and B subgenome in tetraploid Kronos.
DOI: 10.6084/m9.figshare.17104003
title: Additional file 3 of Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry

description: Additional file 3: TableS2. Base-pairing probability of RNA structures of homoeologs of A and B subgenome in tetraploid Kronos.
DOI: 10.15468/2ey998
title: Towards understanding Lepidocyrtus Bourlet, 1839 (Collembola, Entomobryidae) II: new Australian species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mateos, Eduardo, Greenslade, Penelope (2021): Towards understanding Lepidocyrtus Bourlet, 1839 (Collembola, Entomobryidae) II: new Australian species. Zootaxa 4981 (2): 365-387, DOI: https://doi.org/10.11646/zootaxa.4981.2.9
DOI: 10.6073/pasta/3ce77f7fb83fbd31ed29bc4b04c5eda7
title: Estimating Forest Productivity Using Carbon Isotopes in Tree Rings at Harvard Forest 1992-2010

description: We investigated relationships between tree-ring δ13C and growth, and flux tower estimates of gross primary productivity (GPP) at Harvard Forest from 1992 to 2010. Seasonal variations of derived photosynthetic isotope discrimination (Δ13C) and leaf intercellular CO2 concentration (ci) showed significant increasing trends for the dominant deciduous and coniferous species. Δ13C was positively correlated to growing-season GPP and is primarily controlled by precipitation and soil moisture indicating that site conditions maintained high stomatal conductance under increasing atmospheric CO2 levels. Increasing Δ13C over the 1992-2010 period is attributed to increasing annual and summer water availability identified at Harvard Forest and across the region. Higher Δ13C is coincident with an enhancement in growth and ecosystem-level net carbon uptake. This work suggests that tree-ring δ13C could serve as a measure of forest GPP and be used to improve the calibration and predictive skill of ecosystem and carbon cycle models.
DOI: 10.6084/m9.figshare.14885293
title: Data Access from A fast and efficient deep learning procedure for tracking droplet motion in dense microfluidic emulsions

description: zip file with training data
DOI: 10.6084/m9.figshare.14885293.v1
title: Data Access from A fast and efficient deep learning procedure for tracking droplet motion in dense microfluidic emulsions

description: zip file with training data
DOI: 10.25345/c56r7m
title: MassIVE MSV000087721 - Probing light-dependent regulation of the Calvin cycle using a multi-omics approach
title: Photoautotrophic microorganisms are increasingly explored for the conversion of atmospheric carbon dioxide into biomass and valuable products. The Calvin-Benson-Bassham (CBB) cycle is the primary metabolic pathway for net CO2 fixation within oxygenic photosynthetic organisms. The cyanobacteria, Synechocystis sp. PCC 6803, is a model organism for the study of photosynthesis and a platform for many metabolic engineering efforts. The CBB cycle is regulated by complex mechanisms including enzymatic abundance, intracellular metabolite concentrations, energetic cofactors and post-translational enzymatic modifications that depend on the external conditions such as the intensity and quality of light. However, the extent to which each of these mechanisms play a role under different light intensities remains unclear. In this work, we conducted non-targeted proteomics in tandem with isotopically non-stationary metabolic flux analysis (INST-MFA) at four different light intensities to determine the extent to which fluxes within the CBB cycle are controlled by enzymatic abundance. The correlation between specific enzyme abundances and their corresponding reaction fluxes is examined, revealing several enzymes with uncorrelated enzyme abundance and their corresponding flux, suggesting flux regulation by mechanisms other than enzyme abundance. Additionally, the kinetics of 13C labeling of CBB cycle intermediates and estimated inactive pool sizes varied significantly as a function of light intensity suggesting the presence of metabolite channeling, an additional method of flux regulation. These results highlight the importance of the diverse methods of regulation of CBB enzyme activity as a function of light intensity, and highlights the importance of considering these effects in future kinetic models.
DOI: 10.6084/m9.figshare.14885115
title: 基于TMT定量蛋白质组学筛选胸主动脉瘤_夹层蛋白质标志物_张煜.pdf

description: date
DOI: 10.6084/m9.figshare.14885115.v3
title: 基于TMT定量蛋白质组学筛选胸主动脉瘤_夹层蛋白质标志物_张煜.pdf

description: date
DOI: 10.6084/m9.figshare.14885115.v2
title: 基于TMT定量蛋白质组学筛选胸主动脉瘤_夹层蛋白质标志物_张煜.pdf

description: date
DOI: 10.5281/zenodo.5042650
title: Brazilian academic network monitoring data

description: The Ipê Network is an academic network connecting several education, research, and health institutes across Brazil. This dataset is composed of a collection of JSON files made available by the monitoring tool Via Ipê. Each file contains information related to a specific minute. The period covers November 2020, with 55 minutes missing from the dataset. The folder hierarchy defines each file's corresponding time. For instance, the file 11/10/8/20/1d.json.gz corresponds to the JSON file for the monitoring information at 8:20 am on November 10th, 2020.<br> More details and useful code can be found on GitHub.
DOI: 10.5281/zenodo.5042649
title: Brazilian academic network monitoring data

description: The Ipê Network is an academic network connecting several education, research, and health institutes across Brazil. This dataset is composed of a collection of JSON files made available by the monitoring tool Via Ipê. Each file contains information related to a specific minute. The period covers November 2020, with 55 minutes missing from the dataset. The folder hierarchy defines each file's corresponding time. For instance, the file 11/10/8/20/1d.json.gz corresponds to the JSON file for the monitoring information at 8:20 am on November 10th, 2020.<br> More details and useful code can be found on GitHub.
DOI: 10.6084/m9.figshare.14885301
title: CHGCAR-set1

description: CHGCARS from JARVIS-DFT
DOI: 10.6084/m9.figshare.14885301.v1
title: CHGCAR-set1

description: CHGCARS from JARVIS-DFT
DOI: 10.6084/m9.figshare.14885256.v1
title: TABLE 4.xlsx

description: This dataset is the conceptual and empirical study on industries in Malaysia
DOI: 10.6084/m9.figshare.14885256
title: TABLE 4.xlsx

description: This dataset is the conceptual and empirical study on industries in Malaysia
DOI: 10.6084/m9.figshare.14884452.v1
title: Questionnaire, Pre-test and Post-test for the ASD Children

description: The questionnaire is given to get general reaction after playing the VR game <br>The pre-test is to measure the children performance before exposure to the game<br>The post-test is to measure the children performance after exposure to the game
DOI: 10.6084/m9.figshare.14884452
title: Final Autism Dataset

description: Final Autism Dataset
DOI: 10.6084/m9.figshare.14884452.v2
title: Questionnaire, Pre-test and Post-test for the ASD Children

description: Final Autism Dataset
DOI: 10.6073/pasta/b66f7e97147a5336546904c327094d56
title: Vascular Flora of the Harvard Farm at Harvard Forest 2014

description: The objectives of this study were to: (1) Inventory the vascular flora of the former Petersham Country Club (now the Harvard Farm). (2) Collect voucher specimens for the HF Herbarium of species that were not previously documented from Harvard Forest, or that were found historically at HF but were not recorded in 2004–2007 by Jenkins et al. (2008). (3) Establish and sample a series of permanent plots to characterize current vegetation composition, and to enable evaluation of vegetation change over time. (4) Sample soils within permanent plots to document initial conditions and to facilitate future work on soil dynamics and ecosystem processes.
DOI: 10.6084/m9.figshare.14884437
title: Questionnaire, Pre-test and Post-test data

description: Questionnaire is to measure reaction of ASD children after playing the gamePre-test is dataset before exposure to the VR gamePost-test is dataset after exposure to the VR game
DOI: 10.6084/m9.figshare.14884437.v2
title: Questionnaire, Pre-test and Post-test data

description: Questionnaire is to measure reaction of ASD children after playing the gamePre-test is dataset before exposure to the VR gamePost-test is dataset after exposure to the VR game
DOI: 10.6084/m9.figshare.14040185
title: Figures 6 and 7: MGE insertion site data

description: Source data for Figures 6 and 7, and the associated supplementary figures, for the elife submission: The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
DOI: 10.6084/m9.figshare.14040185.v2
title: Figures 6 and 7: MGE insertion site data

description: Source data for Figures 6 and 7, and the associated supplementary figures, for the elife submission: The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
DOI: 10.6084/m9.figshare.14040185.v1
title: Figures 7 and 8: MGE insertion site data

description: Source data for Figures 7 and 8, and the associated supplementary figures, for the elife submission: The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
DOI: 10.15468/tu3ske
title: Integrative taxonomy reveals a new but common Neotropical treefrog, hidden under the name Boana xerophylla

description: This dataset contains the digitized treatments in Plazi based on the original journal article Escalona, Moisés, Marca, Enrique La, Castellanos, Michelle, Fouquet, Antoine, Crawford, Andrew J., Rojas-Runjaic, Fernando J. M., Giaretta, Ariovaldo A., Señaris, J. Celsa, Castroviejo-Fisher, Santiago (2021): Integrative taxonomy reveals a new but common Neotropical treefrog, hidden under the name Boana xerophylla. Zootaxa 4981 (1): 401-448, DOI: https://doi.org/10.11646/zootaxa.4981.3.1
DOI: 10.6073/pasta/782188d2ab4c8ea8ce93e5ad6ab07357
title: Snowpack in Hemlock, Hardwood, and Open Sites at Harvard Forest 2008-2014

description: Sub-forest canopy meteorological forcing and snowpack properties can profoundly influence the winter ecology. 3/4 inch graduated PVC snow stakes and web cams were installed at three Harvard Forest (HF) sites including: mixed-hardwood at the Little Prospect Hill (LPH) Eddy Flux Tower, near the Hemlock walk-up tower, and at the open area behind Shaler Hall. Web cameras connected to a laptop at the three sites provided daily images of snowpack surface depth. Snow density profiles were recorded during weekly to monthly site visits from December 2008 to April 2014. Gaps in the datasets were primarily caused by laptop malfunctions and lack of site visits necessary to maintain equipment and to obtain density measurements of the snowpack. There were no site visits to record snowpack properties during the 2011-2012 snow season, a year of unusually low snowfall. These datasets would prove useful for research related to snow ecology and hydrology projects at Harvard Forest.
DOI: 10.25387/g3.14114234
title: Supplemental Material for Sorgini et al., 2021

description: Supplemental Tables S1-S5.Table S1: Recombinant Inbred Lines used for single family QTL mapping of leaf δ13C, SLA, and ionomics.Table S2: Recombinant Inbred Lines used for leaf δ13C joint linkage mapping.Table S3: Lines used for leaf δ13C GWAS.Table S4: Significant QTL identified in ionomics analyses.Table S5: Weather data for field sites.<br><b>Supplemental Figure 1 NAM RIL Transgressive Segregation. </b>NAM RIL families CML103 (<b>A</b>), CML333 (<b>B</b>), NC358 (<b>C</b>), and Tx303 (<b>D</b>) were sorted by δ<sup>13</sup>C and plotted. Parental lines are shown in red. <b>Supplemental Figure 2 Element and δ<sup>13</sup>C Full Correlation Matrix.</b> A full correlation matrix of element and δ<sup>13</sup>C mean values is show. The diagonal displays histograms of each dataset. Pearson’s r is shown in the upper panel. Scatter plots and best fit line are shown in the lower panel. <b>Supplemental Figure 3 Element QTL Mapping by Chromosome. </b>Significant element QTL are shown by maize chromosomes 1 through 10 on the x-axis (in cM). Each NAM RIL family is represented by a symbol; CML103 (○), CML333 (x), NC358 (□), and Tx303 (Δ). Each element is designated by color. Significance thresholds (dashed horizontal line) were determined using 200 permutations, alpha=0.05 for each QTL independently. <b>Supplemental Figure 4 Genome Wide Association Study for δ<sup>13</sup>C. </b>Manhattan plot showing significance of SNPs derived from a mixed linear model using the Bayesian information criterion to select the optimal number of principal components. The significance threshold represents the Bonferroni correction of familywise error rate.<br>
DOI: 10.25387/g3.14114234.v1
title: Supplemental Material for Sorgini et al., 2021

description: Supplemental Tables S1-S5.Table S1: Recombinant Inbred Lines used for single family QTL mapping of leaf δ13C, SLA, and ionomics.Table S2: Recombinant Inbred Lines used for leaf δ13C joint linkage mapping.Table S3: Lines used for leaf δ13C GWAS.Table S4: Significant QTL identified in ionomics analyses.Table S5: Weather data for field sites.<br><b>Supplemental Figure 1 NAM RIL Transgressive Segregation. </b>NAM RIL families CML103 (<b>A</b>), CML333 (<b>B</b>), NC358 (<b>C</b>), and Tx303 (<b>D</b>) were sorted by δ<sup>13</sup>C and plotted. Parental lines are shown in red. <b>Supplemental Figure 2 Element and δ<sup>13</sup>C Full Correlation Matrix.</b> A full correlation matrix of element and δ<sup>13</sup>C mean values is show. The diagonal displays histograms of each dataset. Pearson’s r is shown in the upper panel. Scatter plots and best fit line are shown in the lower panel. <b>Supplemental Figure 3 Element QTL Mapping by Chromosome. </b>Significant element QTL are shown by maize chromosomes 1 through 10 on the x-axis (in cM). Each NAM RIL family is represented by a symbol; CML103 (○), CML333 (x), NC358 (□), and Tx303 (Δ). Each element is designated by color. Significance thresholds (dashed horizontal line) were determined using 200 permutations, alpha=0.05 for each QTL independently. <b>Supplemental Figure 4 Genome Wide Association Study for δ<sup>13</sup>C. </b>Manhattan plot showing significance of SNPs derived from a mixed linear model using the Bayesian information criterion to select the optimal number of principal components. The significance threshold represents the Bonferroni correction of familywise error rate.<br>
DOI: 10.6084/m9.figshare.14885325
title: Data Availability

description: The data analyzed during a study
DOI: 10.6084/m9.figshare.14885325.v1
title: Data Availability

description: The data analyzed during a study
DOI: 10.5281/zenodo.5046425
title: EPSRC HEED Data Repository: Nepal Household Appliance Survey

description: The dataset deposited here was prepared under the EPSRC-funded Humanitarian Engineering and Energy for Displacement research project (EP/P029531/1). The project aimed to understand the energy needs of displaced communities, create an evidence base on the usage of different energy interventions and provide recommendations for improved design of future energy interventions to better meet the needs of people. As part of the project, three Appliance surveys were conducted in the Uttargaya settlement in Nepal. Appliance surveys are designed to assess the energy needs of a community based on the devices they use. The surveys span three instances across 18 months, starting in October 2018 and ending in April 2020. The survey splits the participants into four categories, organised into sheets, based on the type of metering participants have: 'bulk meter'; 'sub meter'; 'do not possess meter' and 'do not have electrical connection'. The survey anonymises the name of participants and assigns them a unique id as a household number. Information is recorded on the gender of the household owner, the number of people in the household, the type of their electricity connection and the payment type for the electricity connection. The survey collects information on how many of the following appliances have: Electric Bulb; Mobile charger; Refrigerator; Television; Electric Radio; Table Fan; Electric Iron.
DOI: 10.24396/ordar-19
title: 2017 - Water Global Parameters _ Orne River_ Moselle watershed, France

description: pH, Eh, Dissolved Oxygen, temperature, electrical conductivity, turbidity, total suspended solid concentration, particle size distribution
DOI: 10.5281/zenodo.5046424
title: EPSRC HEED Data Repository: Nepal Household Appliance Survey

description: The dataset deposited here was prepared under the EPSRC-funded Humanitarian Engineering and Energy for Displacement research project (EP/P029531/1). The project aimed to understand the energy needs of displaced communities, create an evidence base on the usage of different energy interventions and provide recommendations for improved design of future energy interventions to better meet the needs of people. As part of the project, three Appliance surveys were conducted in the Uttargaya settlement in Nepal. Appliance surveys are designed to assess the energy needs of a community based on the devices they use. The surveys span three instances across 18 months, starting in October 2018 and ending in April 2020. The survey splits the participants into four categories, organised into sheets, based on the type of metering participants have: 'bulk meter'; 'sub meter'; 'do not possess meter' and 'do not have electrical connection'. The survey anonymises the name of participants and assigns them a unique id as a household number. Information is recorded on the gender of the household owner, the number of people in the household, the type of their electricity connection and the payment type for the electricity connection. The survey collects information on how many of the following appliances have: Electric Bulb; Mobile charger; Refrigerator; Television; Electric Radio; Table Fan; Electric Iron.
DOI: 10.24396/ordar-79
title: 2014 - Water Global Parameters _ Orne River _ Moselle watershed, France

description: pH
DOI: 10.6084/m9.figshare.14885235
title: Emotion regulation paradoxes among borderline adolescent: influence of parental care, stressful life events and attachment

description: Code and Data used in the article.<br><br>
DOI: 10.6084/m9.figshare.14885235.v1
title: Emotion regulation paradoxes among borderline adolescent: influence of parental care, stressful life events and attachment

description: Code and Data used in the article.<br><br>
DOI: 10.6084/m9.figshare.14040269
title: Figure 8: GPS MGE recombinations

description: Source data for Figure 8 in the elife submission: The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
DOI: 10.6084/m9.figshare.14040269.v2
title: Figure 8: GPS MGE recombinations

description: Source data for Figure 8 in the elife submission: The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
DOI: 10.6084/m9.figshare.14040269.v1
title: Figure 9: GPS MGE recombinations

description: Source data for Figure 9 in the elife submission: The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.
DOI: 10.5517/ccdc.csd.cc253q67
title: CCDC 1999568: Experimental Crystal Structure Determination

description: Related Article: Xingxing Wu, Reto M. Witzig, Rodolphe Beaud, Christian Fischer, Daniel Häussinger, Christof Sparr|2021|Nat. Catal.|4|457|doi:10.1038/s41929-021-00615-z