cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yvhmhk
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Folsomia candida V.Willem, 1902",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 188 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078079-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cpq65
title: Occurrence Download

description: A dataset containing 52433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Capra ibex Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 52433 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078077-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13341148
title: Pregnancy-related diagnosis codelist developed for the ConcePTION pregnancy algorithm

description: The IMI ConcePTION project aims to build an ecosystem to generate Real World Evidence to address the information gap in medication safety in pregnancy. 

The ConcePTION pregnancy algorithm was developed as part of the IMI ConcePTION project and aimed at identifying a comprehensive list of pregnancies experienced by the population in European healthcare data sources. To achieve this, the ConcePTION pregnancy algorithm was designed to retrieve any record implying a pregnancy at record date from multiple data provenance, for instance, records of birth registries, congenital anomalies register, hospital admission and discharge, primary care. 

The diagnosis code list named “PrA_Codelist” was developed and integrated into the ConcePTION pregnancy algorithm to identify records with a diagnostic code implying that the person is experiencing an ongoing or an end of pregnancy.
DOI: 10.5281/zenodo.13341149
title: Pregnancy-related diagnosis codelist developed for the ConcePTION pregnancy algorithm

description: The IMI ConcePTION project aims to build an ecosystem to generate Real World Evidence to address the information gap in medication safety in pregnancy. 

The ConcePTION pregnancy algorithm was developed as part of the IMI ConcePTION project and aimed at identifying a comprehensive list of pregnancies experienced by the population in European healthcare data sources. To achieve this, the ConcePTION pregnancy algorithm was designed to retrieve any record implying a pregnancy at record date from multiple data provenance, for instance, records of birth registries, congenital anomalies register, hospital admission and discharge, primary care. 

The diagnosis code list named “PrA_Codelist” was developed and integrated into the ConcePTION pregnancy algorithm to identify records with a diagnostic code implying that the person is experiencing an ongoing or an end of pregnancy.
DOI: 10.15468/dl.gnvnd8
title: Occurrence Download

description: A dataset containing 2758 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Lepidocyrtus cyaneus Tullberg, 1871",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2758 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078080-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34770/f7zg-8n59
title: An extended MHD study of the 16 October 2015 MMS diffusion region crossing

description: The Magnetospheric Multiscale (MMS) mission has given us unprecedented
 access to high cadence particle and field data of magnetic reconnection at
 Earth's magnetopause. MMS first passed very near an X-line on 16
 October 2015, the Burch event, and has since observed multiple X-line
 crossings. Subsequent 3D particle-in-cell (PIC) modeling efforts of and
 comparison with the Burch event have revealed a host of novel physical
 insights concerning magnetic reconnection, turbulence induced particle
 mixing, and secondary instabilities. In this study, we employ the Gkeyll
 simulation framework to study the Burch event with different classes of
 extended, multi-fluid magnetohydrodynamics (MHD), including models that
 incorporate important kinetic effects, such as the electron pressure
 tensor, with physics-based closure relations designed to capture linear
 Landau damping. Such fluid modeling approaches are able to capture
 different levels of kinetic physics in global simulations and are
 generally less costly than fully kinetic PIC. We focus on the additional
 physics one can capture with increasing levels of fluid closure refinement
 via comparison with MMS data and existing PIC simulations. In particular,
 we find that the ten-moment model well captures the agyrotropic structure
 of the pressure tensor in the vicinity of the X-line and the magnitude of
 anisotropic electron heating observed in MMS and PIC simulations. However,
 the ten-moment model has difficulty resolving the lower hybrid drift
 instability, which has been observed to plays a fundamental role in
 heating and mixing electrons in the current layer.
DOI: 10.6084/m9.figshare.26808982
title: Data compilations of the manuscript entitled "Antibacterial potential of Pseudomonas aeruginosa ISP1RL4 isolated from seaweed Eucheuma cottonii against multidrug-resistant bacteria"

description: This dataset compiles dataset for the manuscript entitled" Antibacterial potential of Pseudomonas aeruginosa ISP1RL4 isolated from seaweed Eucheuma cottonii against multidrug-resistant bacteria"
DOI: 10.6084/m9.figshare.26808982.v1
title: Data compilations of the manuscript entitled "Antibacterial potential of Pseudomonas aeruginosa ISP1RL4 isolated from seaweed Eucheuma cottonii against multidrug-resistant bacteria"

description: This dataset compiles dataset for the manuscript entitled" Antibacterial potential of Pseudomonas aeruginosa ISP1RL4 isolated from seaweed Eucheuma cottonii against multidrug-resistant bacteria"
DOI: 10.5518/26
title: Spin-orbit interaction enhancement in permalloy thin films by Pt-doping

description: Raw data and images used for figures found in "Spin-orbit interaction enhancement in permalloy thin films by Pt-doping". The data files are grouped by technique.
DOI: 10.15468/dl.n77m9f
title: Occurrence Download

description: A dataset containing 8796 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Orchesella cincta (C.Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 8796 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078081-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nggm2w
title: Occurrence Download

description: A dataset containing 1288 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Tomocerus minor (J.Lubbock, 1862)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1288 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078082-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11546021
title: AlphaFold 3 predicted NLR resistosome structures

description: Abstract

In our paper "A disease resistance protein triggers oligomerization of its NLR helper into a hexameric resistosome to mediate innate immunity," we used the NbNRC2 hexamer structure to evaluate the capabilities of the newly introduced AlphaFold 3 in predicting activated CC-NLR oligomers. Our analysis highlights AlphaFold 3 effectiveness in confidently modelling the N-terminal alpha1-helices of NbNRC2 and other CC-NLRs, a structurally elusive region critical for NLR function but challenging to resolve through conventional structural methods. This study not only underscores the utility of AlphaFold 3 in enhancing our understanding of plant immune receptors but also extends its application to complex oligomerization processes in innate immunity. Here, we provide the Supplementary data accompanying the paper which includes metadata and predicted structures for 29 NLR immune receptors, providing valuable resources for further research in plant pathogen resistance.

 

Index:



Metadata:





Metadata, sequence, and model statistics of all modelled NLRs:



Data S1.xlsx






 



Predicted structures:





AlphaFold 2 vs 3 vs 3+lipids comparison for NbNRC2:



AF_benchmark.zip












[AlphaFold 3] NRC2 oliogmoeric type benchmarks (N = 10):



NRC2_tetramers.zip

NRC2_pentamers.zip

NRC2_hexamers.zip

NRC2_heptamers.zip

NRC2_octamers.zip












[AlphaFold 3] Pentamer vs Hexamer comparison for 11 representative NRC proteins:



NRCs.zip



[AlphaFold 3] Pnetamer vs Hexamer comparison for AtZAR1 (PDB:6j5t) and TmSr35 (PDB:7xe0) experimentally validated cryo-EM structure:



Benchmarks.zip



[AlphaFold 3] Pentamer vs Hexamer comparison for a selection of 8 CC, 6 CCG10, and 2 CCR-NLRs:



CC.zip

CCG10.zip

CCR.zip
DOI: 10.5284/1119093
title: Data from a Construction Integrated Recording at Wendover Green Tunnel, Wendover, Buckinghamshire, 2022 (HS2 Phase One)

description: This collection comprises a digital archive of photographs, GIS files, scanned site records, and reports from the archaeological monitoring conducted by INFRA Archaeology at Wendover Green Tunnel between February and June 2022, with both phases of work falling under the 1C21ELRCI site code.

The Construction Integrated Recording (CIR) uncovered the remains of a large Roman lime kiln with courses of faced chalk blocks surviving, which was recorded in 3D using Structure from motion (SfM). Other notable finds were a Neolithic pit with a Langdale polished stone axe head, a Roman pit with a first century military dagger, as well as a pit with a collection of varying types of loomweights.
DOI: 10.15468/dl.za9y9b
title: Occurrence Download

description: A dataset containing 620 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Aglaoctenus lagotis (Holmberg, 1876)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 620 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078083-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34770/jmx2-4219
title: Light Curves from a Search for Variable Stars in the Globular Cluster M4 with K2

description: The data are 4554 light curves derived from images taken of the globular
 cluster M4 by the Kepler space telescope during the K2 portion of its
 mission, specifically during Campaign 2 of that mission, which occurred in
 2014. A total of 3856 images were taken over approximately three months at
 a cadence of approximately half an hour. The purpose of these observations
 was to find stars and other objects that vary in brightness over time ---
 variable stars. Also included is a table with associated information for
 each of the 4554 objects and their light curves. Please consult README.txt
 for file information. In brief, object_information.txt is a table
 containing information on the 4554 objects for which we obtained light
 curves, and wallace_data.tgz is a zipped tarball containing a copy of
 README.txt, object_information.txt, and the 4554 individual light curve
 files (*_lc.csv). LICENSE.txt contains the license under which the data
 are released.
DOI: 10.15468/dl.en79h3
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron pseudociliipes Cullen"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078084-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.educrw
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mustela eversmanii Lesson, 1827",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 79 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078087-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nztpz
title: Occurrence Download

description: A dataset containing 1266 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Tetragnatha versicolor Walckenaer, 1841",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1266 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078088-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13362106
title: Data for PKiKP and PcP phases

description: Data for AGU Publication
DOI: 10.15468/dl.3u7yr9
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Attalea phalerata Mart. ex Spreng."
 ]
}

 The dataset includes 208 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078089-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqp5s4
title: Occurrence Download

description: A dataset containing 1454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-131.33834 -50.17017,147.46446 -50.17017,147.46446 70.95495,-131.33834 70.95495,-131.33834 -50.17017))",
 "TaxonKey is Desmodesmus communis (E.Hegewald) E.Hegewald"
 ]
}

 The dataset includes 1454 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078090-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.natcw5
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Rhizoglyphus robini Claparède, 1869",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078092-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8qune
title: Occurrence Download

description: A dataset containing 41697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinolophus ferrumequinum (Schreber, 1774)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 41697 records from 1277 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078091-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10356399
title: Sweet Briar House Renovations

description: Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356400
title: Sweet Briar House Renovations

description: Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356402
title: Juostinis ietigalis (X-XI a., kapas 13)

description: Juostinis įmovinis ietigalis (degintinis kapas Nr. 13, Viešvilės kapinynas, Jurbarko r. sav.). Ilgis 243 mm, įmovos ilgis 100 mm, plunksna plačiausioje vietoje 13 mm pločio, įmovos skersmuo - 23,5 mm. Inv. Nr. 183.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356401
title: Juostinis ietigalis (X-XI a., kapas 13)

description: Juostinis įmovinis ietigalis (degintinis kapas Nr. 13, Viešvilės kapinynas, Jurbarko r. sav.). Ilgis 243 mm, įmovos ilgis 100 mm, plunksna plačiausioje vietoje 13 mm pločio, įmovos skersmuo - 23,5 mm. Inv. Nr. 183.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356405
title: Skeletal ox foot

description: Surface scan of the skeletal hindfoot of an ox from the D'Arcy Thompson Zoology Museum at the University of Dundee.

DUNUC 2067 - Hindfoot of Ox - Bos taurus. Height=45cm.

In his celebrated book  On Growth and Form, D'Arcy Thompson shows the mathematical relationships between the feet of an Ox, Sheep and Giraffe - "if we reduce the figures to an identical standard of length... the breadth ... will be approximately two-thirds that of the ox in the case of the sheep and one-third that of the ox in the case of the giraffe."

Scanned with an Artec Space Spider surface scanner. The resulting file is exported as an obj. and imported into Zbrush. The texture is captured during the scanning process and converted to Polypaint in Zbrush.

We'd love to hear from you if you download or print our models, especially if you use them in education and outreach.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356406
title: Skeletal ox foot

description: Surface scan of the skeletal hindfoot of an ox from the D'Arcy Thompson Zoology Museum at the University of Dundee.

DUNUC 2067 - Hindfoot of Ox - Bos taurus. Height=45cm.

In his celebrated book  On Growth and Form, D'Arcy Thompson shows the mathematical relationships between the feet of an Ox, Sheep and Giraffe - "if we reduce the figures to an identical standard of length... the breadth ... will be approximately two-thirds that of the ox in the case of the sheep and one-third that of the ox in the case of the giraffe."

Scanned with an Artec Space Spider surface scanner. The resulting file is exported as an obj. and imported into Zbrush. The texture is captured during the scanning process and converted to Polypaint in Zbrush.

We'd love to hear from you if you download or print our models, especially if you use them in education and outreach.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356407
title: Candlestick of the so-called "Swan Set"

description: ID no.: ZKWawel 8981

Museum: Wawel Royal Castle – State Art Collection

http://muzea.malopolska.pl/en/obiekty/-/a/4869610/4877669

Digitalisation: RDW MIC, Małopolska's Virtual Museums Plus project

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356408
title: Candlestick of the so-called "Swan Set"

description: ID no.: ZKWawel 8981

Museum: Wawel Royal Castle – State Art Collection

http://muzea.malopolska.pl/en/obiekty/-/a/4869610/4877669

Digitalisation: RDW MIC, Małopolska's Virtual Museums Plus project

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356409
title: Beechwood Boulevard Bridge Sign (1922)

description: The Beechwood Boulevard Bridge, also known as the [Greenfield Bridge](https://en.wikipedia.org/wiki/Greenfield_Bridge) was first built in the early 1920s. It was destroyed in 2015 and a replacement bridge was completed in 2017. Nearby the bridge is a small grassy area in which rests some of the old decorative elements of the old bridge.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356410
title: Beechwood Boulevard Bridge Sign (1922)

description: The Beechwood Boulevard Bridge, also known as the [Greenfield Bridge](https://en.wikipedia.org/wiki/Greenfield_Bridge) was first built in the early 1920s. It was destroyed in 2015 and a replacement bridge was completed in 2017. Nearby the bridge is a small grassy area in which rests some of the old decorative elements of the old bridge.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356411
title: Homo erectus (Trinil 2) (433rp1)

description: ***Homo erectus*** 
  
Location: Trinil Hill, Java, Indonesia. 
  
Age: 0.7-1.6 million years ago (?). 
  
Material: plaster cast. 

Dimensions: length, 180 mm; width, 135 mm; height, 82 mm.
  
Notes: RLA catalog no. 433rp1 (cast).  Skull cap discovered by Eugene Dubois in 1891.  Also classified as *Pithecanthropus I* or Java Man.  Cast made between 1930 and 1952 by Mr. F. O. Barlow of the R. F. Damon & Co., London.  From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill.  Model by Aidan Paul.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356412
title: Homo erectus (Trinil 2) (433rp1)

description: ***Homo erectus*** 
  
Location: Trinil Hill, Java, Indonesia. 
  
Age: 0.7-1.6 million years ago (?). 
  
Material: plaster cast. 

Dimensions: length, 180 mm; width, 135 mm; height, 82 mm.
  
Notes: RLA catalog no. 433rp1 (cast).  Skull cap discovered by Eugene Dubois in 1891.  Also classified as *Pithecanthropus I* or Java Man.  Cast made between 1930 and 1952 by Mr. F. O. Barlow of the R. F. Damon & Co., London.  From the teaching collection of the Research Laboratories of Archaeology, University of North Carolina at Chapel Hill.  Model by Aidan Paul.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356416
title: Balkemadonnaen (replika)

description: Created in RealityCapture by Gaute Gunleiksrud from 739 images in 01h:11m:17s.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356415
title: Balkemadonnaen (replika)

description: Created in RealityCapture by Gaute Gunleiksrud from 739 images in 01h:11m:17s.

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356418
title: Joseph Palmer gravestone

description: Leominster MA: https://www.atlasobscura.com/places/grave-of-joseph-palmer

Source: Objaverse 1.0 / Sketchfab
DOI: 10.5281/zenodo.10356417
title: Joseph Palmer gravestone

description: Leominster MA: https://www.atlasobscura.com/places/grave-of-joseph-palmer

Source: Objaverse 1.0 / Sketchfab