cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7436r2hmjy.1
title: OR5K1 is the evolutionary conserved sensor for foodborne and semiochemical alkylpyrazines

description: These are the raw luminescence data (RLU, relative luminescence units, mock-substracted) underlying the EC50 values of all pyrazines and other compounds, to be published in a paper with the title "OR5K1 is the evolutionary conserved sensor for foodborne and semiochemical alkylpyrazines".
The data are in Excel files. Each Excel file contains the concentration-response relations of all compounds tested on a particular odorant receptor type or ortholog.
Some files contain the raw data of a single compound screen versus 616 odorant receptors, or a screen of 178 key food odorants versus a particular odorant receptor type.
DOI: 10.17632/6gxj9hkdsz.1
title: RNA-controlled nucleocytoplasmic shuttling of mRNA decay factors regulates mRNA synthesis and initiates a novel mRNA decay pathway

description: CRAC experiment was performed as described previously (Bohnsack et.al. 2009, 2012 and, Granneman et.al. 2009). RNA-protein complexes were captured tandemly on IgG sepharose and Ni-NTA followed by partial RNase digestion using RNase-IT. After ligation of sequencing adaptors, cDNA libraries were prepared by reverse transcription and PCR amplification followed by Illumina deep sequencing. Data were analyzed as described before (Bohnsack et.al. 2009, 2012 and, Granneman et.al. 2009). 
Resultant sequencing files of full-length Xrn1 (FASTQ_CRAC_Xrn1) and Tail of Xrn1 (FASTQ_CRAC_Tail) each having two distinct biological repeats are uploaded here.
DOI: 10.5281/zenodo.5975989
title: Twenty-five metagenome assembled genomes recovered from the gut microbiome of the domestic ferret, Mustela putorius

description: This dataset is composed of 25 unique metagenome assembled genomes (MAGs) recovered from the gut microbiome of three domestic ferrets (<em>Mustela putorius</em>). Details on both MAG and host ferret metadata, as well as information on sample collection, DNA sequencing, and bioinformatic processing can be found in the American Society for Microbiology Resource Announcement by Amundson et al. (in prep).
DOI: 10.5281/zenodo.5975988
title: Twenty-five metagenome assembled genomes recovered from the gut microbiome of the domestic ferret, Mustela putorius

description: This dataset is composed of 25 unique metagenome assembled genomes (MAGs) recovered from the gut microbiome of three domestic ferrets (<em>Mustela putorius</em>). Details on both MAG and host ferret metadata, as well as information on sample collection, DNA sequencing, and bioinformatic processing can be found in the American Society for Microbiology Resource Announcement by Amundson et al. (in prep).
DOI: 10.5281/zenodo.5599091
title: Meteorology, MAIDENiso parameter files and observational data for Tungsten, Caniapiscau, and associated GPP stations

description: This repository contains three datasets: 1) Meteorology files needed to run the ecophysiological model of forest growth MAIDENiso at the dendrological sites of Tungsten and Caniapiscau and the eddy covariance flux stations of Uaf and Chibougamau. 2) Parameter files needed to run the ecophysiological model of forest growth MAIDENiso at the dendrological sites of Tungsten and Caniapiscau and the eddy covariance flux stations of Uaf and Chibougamau. 3) Observational dataset of snow, and d18O concentration at the dendrological sites, and GPP at the eddy covariance flux stations. In addition, observations of river discharge in the Caniapiscau basin (Quebec).
DOI: 10.5281/zenodo.5095717
title: Meteorology, MAIDENiso parameter files and observational data for Tungsten, Caniapiscau, and associated GPP stations

description: This repository contains three datasets: 1) Meteorology files needed to run the ecophysiological model of forest growth MAIDENiso at the dendrological sites of Tungsten and Caniapiscau and the eddy covariance flux stations of Uaf and Chibougamau. 2) Parameter files needed to run the ecophysiological model of forest growth MAIDENiso at the dendrological sites of Tungsten and Caniapiscau and the eddy covariance flux stations of Uaf and Chibougamau. 3) Observational dataset of snow, and d18O concentration at the dendrological sites, and GPP at the eddy covariance flux stations. In addition, observations of river discharge in the Caniapiscau basin (Quebec).
DOI: 10.5517/ccdc.csd.cc290yv4
title: CCDC 2116086: Experimental Crystal Structure Determination

description: Related Article: Kun Guo, Qian Zeng, Alba Villar-Yanez, Carles Bo, Arjan W. Kleij|2022|Org.Lett.|24|637|doi:10.1021/acs.orglett.1c04086
DOI: 10.5517/ccdc.csd.cc28xrjh
title: CCDC 2113007: Experimental Crystal Structure Determination

description: Related Article: Charles T Hall Junior, Andrea E. Martin, Glenn P. A. Yap|2021|CSD Communication|||
DOI: 10.5281/zenodo.5976003
title: Casanovo data set and model weights

description: Benchmark multi-species data set with pre-processing and the pre-trained model weights used to generate results in "<em>De Novo</em> Mass Spectrometry Peptide Sequencing with a Transformer Model" Source code is available here.
DOI: 10.5281/zenodo.5915149
title: Large surface-rupture gaps and low surface fault slip of the 2021 Mw 7.4 Maduo earthquake along a low-activity strike-slip fault, Tibetan Plateau

description: In this data set, Text S1 describes methods of (i) field investigation, UAV image collection and interpretation and (ii) horizontal and vertical displacement measurements. Figure S3 shows pre-event topographic expressions of the Maduo earthquake fault. Tables S1 and S2 provide measurement results of horizontal and vertical displacements, respectively. Datasets 1-4 provide the UAV flight swath, interpreted surface ruptures and secondary cracks, horizontal displacements and vertical displacements.
DOI: 10.13023/8dcs-cb78
title: Comparative Studies of Reproductive Diapause in North American Populations of Three Hippodamia Species (Coleoptera: Coccinellidae)

description: Adult Hippodamia parenthesis were collected from McLean County, Illinois (40.34°N, 88.77°W), Johnson County, Iowa (41.67°N, 91.52°N), Onondaga County, New York (43.03°N, 76.00°W) and Jefferson County, New York (43.98°N, 75.91°W) (Supplemental Figure 1). Eggs were collected daily from 4 to 6 females in each population and placed in L:D 16:8, 14:10, 12:12,10:14, at 22°C ± 1.0°C. F1 offspring were individually reared in glass vials at each photoperiod on pea aphids and Ephestia kuehniella eggs to examine the effects of photoperiod on development (Data set: H. parenthesis Development times at LD).

Comparisons of the developmental responses of H. parenthesis, H. variegata and H. convergens were made: [data for H. variegata from Obrycki 2018; (Data set: H. parenthesis and H. convergens from three counties in Iowa)]

Pairs of F1 Hippodamia parenthesis adults from each population were maintained at the same larval photoperiod. Pairs were fed and maintained at each photoperiod for 120 days. The date of first oviposition was recorded for each female. (Data set: Four populations of H. parenthesis response to LD (McLean Cty, IL, Johnson Cty, IA, Jefferson Cty, NY, Onondaga Cty, NY)

Comparisons of the female responses to photoperiod between species collected from the same location or at similar latitudes included:
    H. parenthesis and H. variegata from McLean County, IL, (Data set: H. parenthesis and H. variegata from McLean County, IL)
    H. parenthesis and H. variegata from Jefferson County, NY, (Data set: H. parenthesis and H. variegata from Jefferson County, NY)
    H. parenthesis and H. convergens from Boone, Polk, and Johnson Counties in IA. (Data set: H. parenthesis and H. convergens from three counties in Iowa)

Data for H. variegata are from Obrycki (2018); data for H. convergens are from Obrycki et al. (2018).
DOI: 10.6084/m9.figshare.19126109
title: Transcriptions of television news reports on the murder of Brendin Horner broadcast on eTV and SABC in October 2020

description: This study considered news reports aired on two of South Africa’s most widely viewed free-to-air English news channels: SABC 3 and eTV. The reports considered were those pertaining to a specific case where a 21-year-old Farm manager, Brendin Horner, was murdered on 1 October 2020. The murder itself did not receive coverage and it was only from 6 October 2020, when two men accused of his murder appeared in court, that the media reporting began. For this study, the news reports aired during the month of October on SABC 3 and eTV’s prime-time news bulletins were considered. Between 6 October 2020, when the story broke, and 20 October 2020, when the last report was filed on related developments, twenty-eight news items were aired on the case and it was included in the headlines five times.
DOI: 10.5517/ccdc.csd.cc25ppf0
title: CCDC 2016842: Experimental Crystal Structure Determination

description: Related Article: Ashwini K. Nakate, Sagar S. Thorat, Shailja Jain, Gamidi Rama Krishna, Kumar Vanka, Ravindar Kontham|2022|Org.Chem.Front.|9|802|doi:10.1039/D1QO01643A
DOI: 10.5517/ccdc.csd.cc25ppg1
title: CCDC 2016843: Experimental Crystal Structure Determination

description: Related Article: Ashwini K. Nakate, Sagar S. Thorat, Shailja Jain, Gamidi Rama Krishna, Kumar Vanka, Ravindar Kontham|2022|Org.Chem.Front.|9|802|doi:10.1039/D1QO01643A
DOI: 10.5517/ccdc.csd.cc25pph2
title: CCDC 2016844: Experimental Crystal Structure Determination

description: Related Article: Ashwini K. Nakate, Sagar S. Thorat, Shailja Jain, Gamidi Rama Krishna, Kumar Vanka, Ravindar Kontham|2022|Org.Chem.Front.|9|802|doi:10.1039/D1QO01643A
DOI: 10.5517/ccdc.csd.cc26zpgc
title: CCDC 2055283: Experimental Crystal Structure Determination

description: Related Article: Konstantin N. Gavrilov, Ilya V. Chuchelkin, Vladislav K. Gavrilov, Sergey V. Zheglov, Ilya D. Firsin, Valeria M. Trunina, Ilya A. Zamilatskov, Vladimir S. Tyurin, Victor A. Tafeenko, Vladimir V. Chernyshev, Vladislav S. Zimarev, Nataliya S. Goulioukina|2022|New J.Chem.|46|1751|doi:10.1039/D1NJ05143A
DOI: 10.5517/ccdc.csd.cc26zphd
title: CCDC 2055284: Experimental Crystal Structure Determination

description: Related Article: Konstantin N. Gavrilov, Ilya V. Chuchelkin, Vladislav K. Gavrilov, Sergey V. Zheglov, Ilya D. Firsin, Valeria M. Trunina, Ilya A. Zamilatskov, Vladimir S. Tyurin, Victor A. Tafeenko, Vladimir V. Chernyshev, Vladislav S. Zimarev, Nataliya S. Goulioukina|2022|New J.Chem.|46|1751|doi:10.1039/D1NJ05143A
DOI: 10.5517/ccdc.csd.cc27112f
title: CCDC 2056573: Experimental Crystal Structure Determination

description: Related Article: Konstantin N. Gavrilov, Ilya V. Chuchelkin, Vladislav K. Gavrilov, Sergey V. Zheglov, Ilya D. Firsin, Valeria M. Trunina, Ilya A. Zamilatskov, Vladimir S. Tyurin, Victor A. Tafeenko, Vladimir V. Chernyshev, Vladislav S. Zimarev, Nataliya S. Goulioukina|2022|New J.Chem.|46|1751|doi:10.1039/D1NJ05143A
DOI: 10.5517/ccdc.csd.cc27113g
title: CCDC 2056574: Experimental Crystal Structure Determination

description: Related Article: Konstantin N. Gavrilov, Ilya V. Chuchelkin, Vladislav K. Gavrilov, Sergey V. Zheglov, Ilya D. Firsin, Valeria M. Trunina, Ilya A. Zamilatskov, Vladimir S. Tyurin, Victor A. Tafeenko, Vladimir V. Chernyshev, Vladislav S. Zimarev, Nataliya S. Goulioukina|2022|New J.Chem.|46|1751|doi:10.1039/D1NJ05143A
DOI: 10.34740/kaggle/dsv/3140716
title: Omicron daily cases by country (COVID-19 variant)
DOI: 10.5281/zenodo.5976063
title: Sample graphs and sequences for testing sequence-to-graph alignment

description: File descriptions: HLA-61.agc: 61 complete HLA sequences, including GRCh38, CHM13 and 59 haplotypes extracted from HPRC year-1 assemblies. Use AGC to extract individual haplotype sequences. HLA-57.gfa.gz: sequence graph constructed by minigraph-r434, excluding sample HG002 and HG005 C4-96.agc: 96 complete C4 sequences obtained from HPRC C4-90.gfa.gz: sequence graph extracted from the full HPRC year-1 minigraph graph around the C4A/C4B genes. The graph takes GRCh38 as the reference and excludes sample HG002, HG005 and NA19240.
DOI: 10.5517/ccdc.csd.cc288wxc
title: CCDC 2093923: Experimental Crystal Structure Determination

description: Related Article: Yutaro Yamashita, Shohei Tashiro, Yoshiki Ishii, Takayuki Uchihashi, Nobuyuki Matsushita, Ryou Kubota, Mitsuhiko Shionoya|2022|Dalton Trans.|51|1318|doi:10.1039/D1DT03973C
DOI: 10.5517/ccdc.csd.cc28j184
title: CCDC 2100785: Experimental Crystal Structure Determination

description: Related Article: Zhiqiang Lu, Yanzhi Li, Yi Ru, Shujian Yang, Chu Hao, Mengke Zuo, Rongkai Jiao, Weilong Wu, Yan Zhou, Hui Yao, Nianyu Huang, Yuqin Fu|2022|Chem.Commun.|58|1215|doi:10.1039/D1CC06110K
DOI: 10.5517/ccdc.csd.cc28j195
title: CCDC 2100786: Experimental Crystal Structure Determination

description: Related Article: Zhiqiang Lu, Yanzhi Li, Yi Ru, Shujian Yang, Chu Hao, Mengke Zuo, Rongkai Jiao, Weilong Wu, Yan Zhou, Hui Yao, Nianyu Huang, Yuqin Fu|2022|Chem.Commun.|58|1215|doi:10.1039/D1CC06110K
DOI: 10.5517/ccdc.csd.cc28j397
title: CCDC 2100848: Experimental Crystal Structure Determination

description: Related Article: Zhiqiang Lu, Yanzhi Li, Yi Ru, Shujian Yang, Chu Hao, Mengke Zuo, Rongkai Jiao, Weilong Wu, Yan Zhou, Hui Yao, Nianyu Huang, Yuqin Fu|2022|Chem.Commun.|58|1215|doi:10.1039/D1CC06110K
DOI: 10.5517/ccdc.csd.cc28mzxt
title: CCDC 2104587: Experimental Crystal Structure Determination

description: Related Article: Dong Li, Shuaibo Zhang, Bangzhong Wang, Wuding Sun, Jinfeng Zhao, Jingping Qu, Yuhan Zhou|2022|Org.Chem.Front.|9|810|doi:10.1039/D1QO01597D
DOI: 10.5517/ccdc.csd.cc28rz56
title: CCDC 2108408: Experimental Crystal Structure Determination

description: Related Article: Antônio Junio Araujo Dias, Hiroto Takahashi, Juntaro Nogami, Yuki Nagashima, Ken Tanaka|2022|Org.Biomol.Chem.|20|1008|doi:10.1039/D1OB02181H
DOI: 10.6084/m9.figshare.19126139
title: eGWAS_SNP_AllChr.hmp

description: SNP dataset generated via a combination of maize hapmap3 and RNAseq library derived SNPs used for the eGWAS paper<br>
DOI: 10.5281/zenodo.5153939
title: Dark matter and Z' masses preferred by muon g-2 and thermal freeze-out

description: Companion data for the paper "The Simplest and Most Predictive Model of Muon g−2 and Thermal Dark Matter" [https://arxiv.org/abs/2107.09067]. The data provides constraints on the masses of DM and Z' which solve the muon g-2 anomaly and generate sufficient thermal dark matter. Two such bands are given (on either side of the resonance), each of which has a 'min', 'mid', and 'max' value based on current 1 sigma constraints on the muon g-2 anomaly. All masses are in MeV.
DOI: 10.5281/zenodo.5153938
title: Dark matter and Z' masses preferred by muon g-2 and thermal freeze-out

description: Companion data for the paper "The Simplest and Most Predictive Model of Muon g−2 and Thermal Dark Matter" [https://arxiv.org/abs/2107.09067]. The data provides constraints on the masses of DM and Z' which solve the muon g-2 anomaly and generate sufficient thermal dark matter. Two such bands are given (on either side of the resonance), each of which has a 'min', 'mid', and 'max' value based on current 1 sigma constraints on the muon g-2 anomaly. All masses are in MeV.
DOI: 10.21227/s9cp-1e39
title: Data of enterprise alliances

description: This dataset includes the types of enteprise alliances, patent related to digitalization, market capitalization, research expense, profit margin, digitalization keywords searching index, shared platform, shared resources, governing mechanism, alliance stability, rewarding mechanism in ten industries
DOI: 10.6084/m9.figshare.19126220
title: Additional file 11 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 11. Quantitative synthesis database. Contains the coding (extracted data) for all articles/studies/datasets included in the quantitative synthesis. Includes the actual coding of all articles/studies/datasets, the calculations of effect sizes, calculations for aggregating effect sizes and a list of articles/studies/datasets not considered during quantitative meta-analysis.
DOI: 10.6084/m9.figshare.19126220.v1
title: Additional file 11 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 11. Quantitative synthesis database. Contains the coding (extracted data) for all articles/studies/datasets included in the quantitative synthesis. Includes the actual coding of all articles/studies/datasets, the calculations of effect sizes, calculations for aggregating effect sizes and a list of articles/studies/datasets not considered during quantitative meta-analysis.
DOI: 10.6084/m9.figshare.19126235
title: Additional file 3 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 3. Excluded articles. List of articles excluded on the basis of full-text assessment or data extraction and reasons for exclusion. Separate lists of articles excluded on the basis of full-text assessment, assessment during data-extraction, articles that were unobtainable and relevant reviews.
DOI: 10.6084/m9.figshare.19126235.v1
title: Additional file 3 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 3. Excluded articles. List of articles excluded on the basis of full-text assessment or data extraction and reasons for exclusion. Separate lists of articles excluded on the basis of full-text assessment, assessment during data-extraction, articles that were unobtainable and relevant reviews.
DOI: 10.6084/m9.figshare.19126241
title: Additional file 5 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 5. Data-extraction sheet. Contains the coding (extracted data) for all articles/studies included in the narrative synthesis. Includes a description of the coding form, the actual coding of all articles/studies, and a list of supplementary articles.
DOI: 10.6084/m9.figshare.19126241.v1
title: Additional file 5 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 5. Data-extraction sheet. Contains the coding (extracted data) for all articles/studies included in the narrative synthesis. Includes a description of the coding form, the actual coding of all articles/studies, and a list of supplementary articles.
DOI: 10.6084/m9.figshare.19126256
title: Additional file 9 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 9. Study validity assessment results. Contains results of assessments for each article/study included in the narrative synthesis.
DOI: 10.6084/m9.figshare.19126256.v1
title: Additional file 9 of How do changes in flow magnitude due to hydropower operations affect fish abundance and biomass in temperate regions? A systematic review

description: Additional file 9. Study validity assessment results. Contains results of assessments for each article/study included in the narrative synthesis.
DOI: 10.6084/m9.figshare.19126268.v1
title: Additional file 2 of Cross-species transcriptomic analyses reveals common and opposite responses in Arabidopsis, rice and barley following oxidative stress and hormone treatment

description: Additional file 2: Supplemental Table 1. Gene expression of marker genes to validate stress treatments. Supplemental Table 2. Log2 FC of all differentially expressed genes in response to different stress treatments. Supplemental Table 3. Functional categories of differentially expressed genes in all species. Supplemental Table 4. Orthogroup inference in Arabidopsis, rice and barley and expression responses of DEGs within these. Supplemental Table 5. Conserved stress responses across species. Supplemental Table 6. Gene ontology (GO) analysis of differentially expressed Arabidopsis genes in response to stress. Supplemental Table 7. Gene expression pattern and the functional role of Arabidopsis genes. Supplemental Table 8. MDM enrichment analysis and identification of MDS candidate genes. Supplemental Table 9. Oppositely responsive genes in Arabidopsis, rice and barley following stress treatments. Supplemental Table 10. List of transcription factors in Arabidopsis, rice and barley. Supplemental Table 11. Enrichment analysis of all transcription factor families in response to stress in Arabidopsis, rice and barley. Supplemental Table 12. Oppositely responsive transcription factor families in different stress treatments. Supplemental Table 13. List of all qRT-PCR primer used in this study.
DOI: 10.6084/m9.figshare.19126268
title: Additional file 2 of Cross-species transcriptomic analyses reveals common and opposite responses in Arabidopsis, rice and barley following oxidative stress and hormone treatment

description: Additional file 2: Supplemental Table 1. Gene expression of marker genes to validate stress treatments. Supplemental Table 2. Log2 FC of all differentially expressed genes in response to different stress treatments. Supplemental Table 3. Functional categories of differentially expressed genes in all species. Supplemental Table 4. Orthogroup inference in Arabidopsis, rice and barley and expression responses of DEGs within these. Supplemental Table 5. Conserved stress responses across species. Supplemental Table 6. Gene ontology (GO) analysis of differentially expressed Arabidopsis genes in response to stress. Supplemental Table 7. Gene expression pattern and the functional role of Arabidopsis genes. Supplemental Table 8. MDM enrichment analysis and identification of MDS candidate genes. Supplemental Table 9. Oppositely responsive genes in Arabidopsis, rice and barley following stress treatments. Supplemental Table 10. List of transcription factors in Arabidopsis, rice and barley. Supplemental Table 11. Enrichment analysis of all transcription factor families in response to stress in Arabidopsis, rice and barley. Supplemental Table 12. Oppositely responsive transcription factor families in different stress treatments. Supplemental Table 13. List of all qRT-PCR primer used in this study.
DOI: 10.6084/m9.figshare.19126281.v1
title: Additional file 5 of What are the outcomes of marine site protection on poverty of coastal communities in Southeast Asia? A systematic review protocol

description: Additional file 5: Data extraction sheet.
DOI: 10.6084/m9.figshare.19126281
title: Additional file 5 of What are the outcomes of marine site protection on poverty of coastal communities in Southeast Asia? A systematic review protocol

description: Additional file 5: Data extraction sheet.
DOI: 10.6084/m9.figshare.19126341
title: Additional file 6 of TAL Effectors with Avirulence Activity in African Strains of Xanthomonas oryzae pv. oryzae

description: Additional file 6. Supplemental Tables
DOI: 10.6084/m9.figshare.19126341.v1
title: Additional file 6 of TAL Effectors with Avirulence Activity in African Strains of Xanthomonas oryzae pv. oryzae

description: Additional file 6. Supplemental Tables