cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2073058
title: Coastal Migration and Homing of Roanoke River Striped Bass

description: Anadromy in Roanoke River Striped Bass <i>Morone saxatilis</i> has been documented; however, the specifics of the ocean migration and the degree of homing in this population remain unstudied and would greatly benefit the management of this economically important species. To this end, we telemetered and released 19 large Roanoke River Striped Bass (750–1,146 mm TL) on their spawning grounds during the springs of 2011 and 2012. Data from a large-scale acoustic telemetry array along the U.S. Atlantic coast (480 total receivers, including the Roanoke River) were used to evaluate the seasonal migration and distribution of telemetered fish, their degree of homing and skipped spawning, their migration speeds, and the environmental drivers of migration timing. We found that large Roanoke River Striped Bass (&gt;900 mm TL) rapidly emigrated (˜59 km/d) after spawning to distant (&gt;1,000 km) northern ocean waters (New Jersey to Massachusetts), where they spent their summers. They then migrated southward in the fall to overwintering habitats off Virginia and North Carolina and completed their migration circuit the following spring by returning to the Roanoke River to spawn. Our results showed no evidence of straying or skipped spawning, as all migrants successfully returned (homed) to the Roanoke River the next spring to spawn. Cooler ocean water temperatures in 2013 delayed the spring spawning run by nearly 3 weeks relative to a year of average spring temperatures (2012). Our study provides novel information that aids the management of Striped Bass at both small (e.g., setting of fishing seasons in the Roanoke River) and large spatial scales (e.g., stock identification of Roanoke River fish in the mixed-stock ocean fishery) and more broadly highlights the utility of large-scale cooperative telemetry arrays in studying fish migration. Received February 5, 2015; accepted May 27, 2015
DOI: 10.6084/m9.figshare.2073052
title: Simulating the Trophic Impacts of Fishery Policy Options on the West Florida Shelf Using Ecopath with Ecosim

description: The recovery of several top predators in the Gulf of Mexico is likely to increase predation on and competition with other target and nontarget species, possibly causing the abundance of those species to decline. While changes are taking place at the upper trophic levels, exploitation of prey species and climate change are altering productivity at the lower levels. An Ecopath with Ecosim model was developed to simulate the ecosystem impacts of Reef Fish Fishery Management Plan Amendment 30B (which aims to rebuild Gag <i>Mycteroperca microlepis</i>) and Amendment 31 (which reduces effort in the longline fishery). We also evaluated the impact of a hypothetical increase in the exploitation of baitfish and future changes to phytoplankton productivity. The model predicted that rebuilding Gag will cause the biomass of Black Sea Bass <i>Centropristis striata</i> to be 20% lower than it is now and those of Black Grouper <i>M. bonaci</i>, King Mackerel <i>Scomberomorus cavalla</i>, and other shallow-water groupers to be 5–10% lower. Reducing effort in the longline fishery will lead to biomass declines for Black Sea Bass (13%) and Vermilion Snapper <i>Rhomboplites aurorubens</i> (7%). Harvesting baitfish at historically high levels caused the biomass of Red Snapper <i>Lutjanus campechanus</i>, Vermilion Snapper, Greater Amberjack <i>Seriola dumerili</i>, King Mackerel, and numerous species of dolphins and seabirds to be 5–12% lower after 20 years, while biomass increased for species whose diet consists of benthic-associated prey. This paper demonstrates that ecosystem models can be used to quantify the potential ecological impacts of management goals and that the predictions of such models should be considered alongside stock projections from single-species models that assume a constant environment. We intend for this research effort to lead to a more focused and coherent strategy for ecosystem-based fishery management in the Gulf of Mexico. Received January 30, 2014; accepted September 9, 2014
DOI: 10.6084/m9.figshare.2073058.v1
title: Coastal Migration and Homing of Roanoke River Striped Bass

description: Anadromy in Roanoke River Striped Bass <i>Morone saxatilis</i> has been documented; however, the specifics of the ocean migration and the degree of homing in this population remain unstudied and would greatly benefit the management of this economically important species. To this end, we telemetered and released 19 large Roanoke River Striped Bass (750–1,146 mm TL) on their spawning grounds during the springs of 2011 and 2012. Data from a large-scale acoustic telemetry array along the U.S. Atlantic coast (480 total receivers, including the Roanoke River) were used to evaluate the seasonal migration and distribution of telemetered fish, their degree of homing and skipped spawning, their migration speeds, and the environmental drivers of migration timing. We found that large Roanoke River Striped Bass (&gt;900 mm TL) rapidly emigrated (˜59 km/d) after spawning to distant (&gt;1,000 km) northern ocean waters (New Jersey to Massachusetts), where they spent their summers. They then migrated southward in the fall to overwintering habitats off Virginia and North Carolina and completed their migration circuit the following spring by returning to the Roanoke River to spawn. Our results showed no evidence of straying or skipped spawning, as all migrants successfully returned (homed) to the Roanoke River the next spring to spawn. Cooler ocean water temperatures in 2013 delayed the spring spawning run by nearly 3 weeks relative to a year of average spring temperatures (2012). Our study provides novel information that aids the management of Striped Bass at both small (e.g., setting of fishing seasons in the Roanoke River) and large spatial scales (e.g., stock identification of Roanoke River fish in the mixed-stock ocean fishery) and more broadly highlights the utility of large-scale cooperative telemetry arrays in studying fish migration. Received February 5, 2015; accepted May 27, 2015
DOI: 10.6084/m9.figshare.2951263.v480
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073052.v1
title: Simulating the Trophic Impacts of Fishery Policy Options on the West Florida Shelf Using Ecopath with Ecosim

description: The recovery of several top predators in the Gulf of Mexico is likely to increase predation on and competition with other target and nontarget species, possibly causing the abundance of those species to decline. While changes are taking place at the upper trophic levels, exploitation of prey species and climate change are altering productivity at the lower levels. An Ecopath with Ecosim model was developed to simulate the ecosystem impacts of Reef Fish Fishery Management Plan Amendment 30B (which aims to rebuild Gag <i>Mycteroperca microlepis</i>) and Amendment 31 (which reduces effort in the longline fishery). We also evaluated the impact of a hypothetical increase in the exploitation of baitfish and future changes to phytoplankton productivity. The model predicted that rebuilding Gag will cause the biomass of Black Sea Bass <i>Centropristis striata</i> to be 20% lower than it is now and those of Black Grouper <i>M. bonaci</i>, King Mackerel <i>Scomberomorus cavalla</i>, and other shallow-water groupers to be 5–10% lower. Reducing effort in the longline fishery will lead to biomass declines for Black Sea Bass (13%) and Vermilion Snapper <i>Rhomboplites aurorubens</i> (7%). Harvesting baitfish at historically high levels caused the biomass of Red Snapper <i>Lutjanus campechanus</i>, Vermilion Snapper, Greater Amberjack <i>Seriola dumerili</i>, King Mackerel, and numerous species of dolphins and seabirds to be 5–12% lower after 20 years, while biomass increased for species whose diet consists of benthic-associated prey. This paper demonstrates that ecosystem models can be used to quantify the potential ecological impacts of management goals and that the predictions of such models should be considered alongside stock projections from single-species models that assume a constant environment. We intend for this research effort to lead to a more focused and coherent strategy for ecosystem-based fishery management in the Gulf of Mexico. Received January 30, 2014; accepted September 9, 2014
DOI: 10.6084/m9.figshare.2073043
title: Video Laryngoscopic Techniques Associated with Intubation Success in a Helicopter Emergency Medical Service System

description: <b>Objectives.</b> Video laryngoscopy (VL) is a technical adjunct to facilitate endotracheal intubation (ETI). VL also provides objective data for training and quality improvement, allowing evaluation of the technique and airway conditions during ETI. Previous studies of factors associated with ETI success or failure are limited by insufficient nomenclature, individual recall bias and self-report. We tested whether the covariates in prehospital VL recorded data were associated with ETI success. We also measured association between time and clinical variables. <b>Methods.</b> Retrospective review was conducted in a non-physician staffed helicopter emergency medical service system. ETI was typically performed using sedation and neuromuscular-blockade under protocolized orders. We obtained process and outcome variables from digitally recorded VL data. Patient characteristics data were also obtained from the emergency medical service record and linked to the VL recorded data. The primary outcome was to identify VL covariates associated with successful ETI attempts. <b>Results.</b> Among 304 VL recorded ETI attempts in 268 patients, ETI succeeded for 244 attempts and failed for 60 attempts (first-pass success rate, 82% and overall success rate, 94%). Laryngoscope blade tip usually moved from a shallow position in the oropharynx to the vallecula. In the multivariable logistic regression analysis, attempt time (<i>p</i> = 0.02; odds ratio [OR] 0.99), Cormack-Lehane view (<i>p</i> &lt; 0.001; OR 0.23), bodily fluids obstructing the view (<i>p</i> = 0.01; OR 0.29), and VL equipment failure (<i>p</i> &lt; 0.001; OR 0.14) were negatively associated with successful attempts. Bodily fluids obstructing the view (<i>p</i> &lt; 0.001; hazard ratio [HR] 0.51), VL equipment failure (<i>p</i> = 0.003; HR 0.42), shallow placement of blade tip within 4 seconds (<i>p</i> &lt; 0.001; HR 0.40), number of forward movements (<i>p</i> &lt; 0.001; HR 0.84), trauma (<i>p</i> = 0.04; HR 0.65), and neurological diagnosis (<i>p</i> = 0.04; HR 0.60) were associated with longer ETI attempt time. <b>Conclusions.</b> Bodily fluids obstructing the view, equipment problems, higher Cormack-Lehane view, and longer ETI attempt time were negatively associated with successful ETI attempts. Initially shallow blade tip position may associate with longer ETI time. VL is useful for measuring and describing multiple factors of ETI and can provide valuable data.
DOI: 10.6084/m9.figshare.2951263.v481
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073043.v1
title: Video Laryngoscopic Techniques Associated with Intubation Success in a Helicopter Emergency Medical Service System

description: <b>Objectives.</b> Video laryngoscopy (VL) is a technical adjunct to facilitate endotracheal intubation (ETI). VL also provides objective data for training and quality improvement, allowing evaluation of the technique and airway conditions during ETI. Previous studies of factors associated with ETI success or failure are limited by insufficient nomenclature, individual recall bias and self-report. We tested whether the covariates in prehospital VL recorded data were associated with ETI success. We also measured association between time and clinical variables. <b>Methods.</b> Retrospective review was conducted in a non-physician staffed helicopter emergency medical service system. ETI was typically performed using sedation and neuromuscular-blockade under protocolized orders. We obtained process and outcome variables from digitally recorded VL data. Patient characteristics data were also obtained from the emergency medical service record and linked to the VL recorded data. The primary outcome was to identify VL covariates associated with successful ETI attempts. <b>Results.</b> Among 304 VL recorded ETI attempts in 268 patients, ETI succeeded for 244 attempts and failed for 60 attempts (first-pass success rate, 82% and overall success rate, 94%). Laryngoscope blade tip usually moved from a shallow position in the oropharynx to the vallecula. In the multivariable logistic regression analysis, attempt time (<i>p</i> = 0.02; odds ratio [OR] 0.99), Cormack-Lehane view (<i>p</i> &lt; 0.001; OR 0.23), bodily fluids obstructing the view (<i>p</i> = 0.01; OR 0.29), and VL equipment failure (<i>p</i> &lt; 0.001; OR 0.14) were negatively associated with successful attempts. Bodily fluids obstructing the view (<i>p</i> &lt; 0.001; hazard ratio [HR] 0.51), VL equipment failure (<i>p</i> = 0.003; HR 0.42), shallow placement of blade tip within 4 seconds (<i>p</i> &lt; 0.001; HR 0.40), number of forward movements (<i>p</i> &lt; 0.001; HR 0.84), trauma (<i>p</i> = 0.04; HR 0.65), and neurological diagnosis (<i>p</i> = 0.04; HR 0.60) were associated with longer ETI attempt time. <b>Conclusions.</b> Bodily fluids obstructing the view, equipment problems, higher Cormack-Lehane view, and longer ETI attempt time were negatively associated with successful ETI attempts. Initially shallow blade tip position may associate with longer ETI time. VL is useful for measuring and describing multiple factors of ETI and can provide valuable data.
DOI: 10.6084/m9.figshare.2073028
title: The use of Multi Agent Systems in Cloud e-Learning

description: In recent years, personalization and customization in cloud services are more than evident. Cloud e-Learning (CeL) is an upgraded model of traditional e-Learning which aims to offer personalization, collaboration through interaction and structured customized learning content. Cloud e- Learners will express their preferences and be offered courses as a result of a multi-agent system (MAS) interaction which will match learners’ profiles and preferences with content of the learning cloud. The level of intelligence of the multi-agent system will continually increase as more learners interact with the system. Actual learning will be evaluated by agents and learners, thus providing opportunities to change preferences, domain interests and desired level of knowledge. Agents will be semantically assisted by ontologies. In this paper, we define a scenario for CeL and demonstrate the need for MAS and semantic annotation. We also present a tentative abstract architecture and speculate on future work.
DOI: 10.6084/m9.figshare.2951263.v482
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2073007
title: Blackhead Remover

description: Use Glow blackhead remover tools to easily remove the blackheads. We recommend to steam you face before using the blackhead remover tools, as this will help soften the comedones and you can remove them with ease.
DOI: 10.6084/m9.figshare.2073001
title: data and souce code.rar

description: AUTOMATIC MULTIPLE-NEEDLE SURGICAL PLANNING of ROBOTIC-ASSISTED MICROWAVE COAGULATION in LARGE LIVER TUMOR THERAPY<br><br>
DOI: 10.6084/m9.figshare.2073007.v1
title: Blackhead Remover

description: Use Glow blackhead remover tools to easily remove the blackheads. We recommend to steam you face before using the blackhead remover tools, as this will help soften the comedones and you can remove them with ease.
DOI: 10.6084/m9.figshare.2951263.v483
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2072944
title: Optimized microhydrated calcium fluoride clusters at MP2/6-311++G** and HF/6-31G* levels of theory

description: Structures optimized at the HF/6-31G* and MP2/6-311++G** levels of theory.
DOI: 10.6084/m9.figshare.2073001.v1
title: data and souce code.rar

description: AUTOMATIC MULTIPLE-NEEDLE SURGICAL PLANNING of ROBOTIC-ASSISTED MICROWAVE COAGULATION in LARGE LIVER TUMOR THERAPY<br><br>
DOI: 10.6084/m9.figshare.2951263.v484
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2072944.v1
title: Optimized microhydrated calcium fluoride clusters at MP2/6-311++G** and HF/6-31G* levels of theory

description: Structures optimized at the HF/6-31G* and MP2/6-311++G** levels of theory.
DOI: 10.6084/m9.figshare.2073001.v3
title: data and souce code.rar

description: AUTOMATIC MULTIPLE-NEEDLE SURGICAL PLANNING of ROBOTIC-ASSISTED MICROWAVE COAGULATION in LARGE LIVER TUMOR THERAPY<br><br>
DOI: 10.6084/m9.figshare.2072941
title: Optimized microhydrated fluoride ion clusters at the MP2/6-311++G** level of theory

description: This are the structures of microhydrated fluoride ion clusters, optimized at the MP2/6-31++G** and HF/6-31G* levels of theory.
DOI: 10.6084/m9.figshare.2072983.v1
title: 25 May 2015 Field Notes

description: Field notes including image and/or video records.
DOI: 10.6084/m9.figshare.2072938
title: Optimized microhydrated Ca(II) clusters Ca(H2O)n at the HF/6-31G* level of theory

description: These are the structures of microhydrated Ca(II), optimized at the HF/6-31G* level of theory and explicit water. The clusters have the general formula Ca(H<sub>2</sub>O)<sub>n</sub>, where n = 0 to 14. These results correspond to the previously published paper DOI: 10.1007/s00894-012-1707-6
DOI: 10.6084/m9.figshare.2073001.v2
title: data and souce code.rar

description: AUTOMATIC MULTIPLE-NEEDLE SURGICAL PLANNING of ROBOTIC-ASSISTED MICROWAVE COAGULATION in LARGE LIVER TUMOR THERAPY<br><br>
DOI: 10.6084/m9.figshare.2951263.v485
title: UNH-RVAT 3-D Spalart--Allmaras RANS simulation results

description: Results from simulating the UNH-RVAT cross-flow turbine in three dimensions with the Spalart--Allmaras RANS model in OpenFOAM 2.3.x (590d57f32fed). See link below for case files (note: use the `SpalartAllmaras` branch), which include a script for downloading and extracting, as well as scripts for post-processing.
DOI: 10.6084/m9.figshare.2072935
title: Behavioural data

description: Behavioural data (RT and correct) from 54 individuals, including demographics.
DOI: 10.6084/m9.figshare.2072935.v1
title: Behavioural data

description: Behavioural data (RT and correct) from 54 individuals, including demographics.
DOI: 10.6084/m9.figshare.2072938.v1
title: Optimized microhydrated Ca(II) clusters Ca(H2O)n at the HF/6-31G* level of theory

description: These are the structures of microhydrated Ca(II), optimized at the HF/6-31G* level of theory and explicit water. The clusters have the general formula Ca(H<sub>2</sub>O)<sub>n</sub>, where n = 0 to 14. These results correspond to the previously published paper DOI: 10.1007/s00894-012-1707-6
DOI: 10.6084/m9.figshare.2072941.v1
title: Optimized microhydrated fluoride ion clusters at the MP2/6-311++G** level of theory

description: This are the structures of microhydrated fluoride ion clusters, optimized at the MP2/6-31++G** and HF/6-31G* levels of theory.
DOI: 10.6084/m9.figshare.2072929
title: Data for paper: Viral coinfection is shaped by host ecology and virus-virus interactions across diverse microbial taxa and environments (in press at Virus Evolution)

description: Infection of more than one virus in a host, coinfection, is common across taxa and environments. Viral coinfection can enable genetic exchange, alter the dynamics of infections, and change the course of viral evolution. Yet, a systematic test of the factors explaining variation in viral coinfection across different taxa and environments awaits completion. Here I employ three microbial data sets of virus-host interactions covering cross-infectivity, culture coinfection, and single-cell coinfection (total: 6,564 microbial hosts, 13,103 viruses) to provide a broad, comprehensive picture of the ecological and biological factors shaping viral coinfection. I found evidence that ecology and virus-virus interactions are recurrent factors shaping coinfection patterns. Host ecology was a consistent and strong predictor of coinfection across all three datasets: cross-infectivity, culture coinfection, and single-cell coinfection. Host phylogeny or taxonomy was a less consistent predictor, being weak or absent in the cross-infectivity and single-cell coinfection models, yet it was the strongest predictor in the culture coinfection model. Virus-virus interactions strongly affected coinfection. In the largest test of superinfection exclusion to date, prophage sequences reduced culture coinfection by other prophages, with a weaker effect on extrachromosomal virus coinfection. At the single-cell level, prophage sequences eliminated coinfection. Virus-virus interactions also <i>increased</i> culture coinfection with ssDNA-dsDNA coinfections &gt;2x more likely than ssDNA-only coinfections. The presence of CRISPR spacers was associated with a ~50% reduction in single-cell coinfection in a marine bacteria, despite the absence of exact spacer matches in any active infection. Collectively, these results suggest the environment bacteria inhabit and the interactions among surrounding viruses are two factors consistently shaping viral coinfection patterns. These findings highlight the role of virus-virus interactions in coinfection with implications for phage therapy, microbiome dynamics, and viral infection treatments.