cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48436/9vtmv-7mg45
title: Data repository for the manuscript  "Analytical expression for π-ton vertex contributions to the optical conductivity"

description: This repository contains the data behind the plots of the manuscript

  Analytical expression for π-ton vertex contributions to the optical conductivity

  https://arxiv.org/abs/2409.11158 to appear in SciPos.

 We derive the analytical expression for these pi-ton vertex corrections to the optical conductivity, partially requiring a numerical integration.

The repository contains the data behind the figures of the manuscript.
DOI: 10.15468/dl.7mxrx4
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euwallacea fornicatus (Eichhoff, 1868) Eichhoff, 1868"
 ]
}

 The dataset includes 165 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012985-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z67zap
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paphiopedilum areeanum"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049156-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25573/serc.31113289
title: SMARTX wetland data for "Are marsh organs suitable for measuring biogeochemical function?"

description: This is a subset of data from the Salt Marsh Accretion Response to Temperature eXperiment (SMARTX; https://serc.si.edu/gcrew/warming). The data included are from Schoenoplectus americanus dominated plots with ambient CO2 concentrations and warming set to 5.1 degrees C above ambient temperature. Data include aboveground biomass (2019-2023), carbon dioxide fluxes (2022-2023), and reduction-oxidation potential (2022-2023). Please see the readme files for more specific metadata for each file.
DOI: 10.25573/serc.31113289.v1
title: SMARTX wetland data for "Are marsh organs suitable for measuring biogeochemical function?"

description: This is a subset of data from the Salt Marsh Accretion Response to Temperature eXperiment (SMARTX; https://serc.si.edu/gcrew/warming). The data included are from Schoenoplectus americanus dominated plots with ambient CO2 concentrations and warming set to 5.1 degrees C above ambient temperature. Data include aboveground biomass (2019-2023), carbon dioxide fluxes (2022-2023), and reduction-oxidation potential (2022-2023). Please see the readme files for more specific metadata for each file.
DOI: 10.15468/dl.yjnex8
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((34.354 -9.701,36.534 -9.701,36.534 -8.086,34.354 -8.086,34.354 -9.701))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Neptis laeta, Cascabela thevetia, Senna siamea, Streptopelia capicola, Poliana buchholzi, Papilio dardanus)",
 "Year 2014-2022"
 ]
}

 The dataset includes 105 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002553-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48331/scielodata.e7vc57/viqbmc
title: Supplementary_File_2.tab

description: Contains the R code and analysis steps performed for data retrieval, quality control, and normalization.
DOI: 10.48331/scielodata.e7vc57/iv8toh
title: Supplementary_File_1.tab

description: Contains the results of the differential expression analysis for the seven GEO datasets analyzed.
DOI: 10.48331/scielodata.e7vc57/c0f5wg
title: Supplementary_File_3.tab

description: Comprehensive supplementary tables containing detailed statistical results.
DOI: 10.48331/scielodata.e7vc57/8tnc05
title: Supplementary_ Figure_1.jpg

description: OTSCC tumoral CCNA2 mRNA expression showed no significant correlation with CCNA2 promotor methylation levels.
DOI: 10.48331/scielodata.e7vc57/hn3j8l
title: Supplementary_ Figure_2.jpg

description: The protein-protein network of the proteins encoded by 1,070 of the 1,117 genes found to be upregulated in OTSCC
DOI: 10.48331/scielodata.e7vc57/pgmdzt
title: README.txt
DOI: 10.48331/scielodata.e7vc57
title: Replication Data for: Integrated Analysis Identifies CCNA2 as a Candidate Diagnostic and Prognostic Biomarker in Oral Tongue Squamous Cell Carcinoma

description: This dataset contains supplementary files and figures supporting the integrative transcriptomic analyses of oral tongue squamous cell carcinoma (OTSCC). It includes differentially expressed gene (DEG) lists with FDR-adjusted p-values, R scripts used for DEG analyses, a curated set of 1,117 consistently upregulated genes, and survival analyses identifying genes associated with overall and disease-free survival. The dataset further provides CCNA2-centered correlation analyses, KEGG Pathway and Gene Ontology enrichment results, and protein–protein interaction (PPI) network analyses identifying hub proteins in both CCNA2 co-expression and global OTSCC networks. Supplementary figures illustrate CCNA2 methylation analysis and PPI network of upregulated genes in OTSCC.
DOI: 10.6084/m9.figshare.31113120
title: Microbiological spectrum, clinical outcomes, and risk factors for bloodstream infections during immune checkpoint inhibitor therapy: a nested case-control study

description: Immune checkpoint inhibitors (ICIs) modulate host immunity and may increase infection risk. The pathogen profile, outcomes, and predictors of bloodstream infections (BSIs) in ICI recipients are not well defined; we aimed to characterise these features and identify independent risk factors. We performed a retrospective nested case–control study within a cohort of 2,584 adult cancer patients who received ICIs at a tertiary centre from January 2018 to December 2023. We identified 185 BSI cases occurring during or within 90 days after the last ICI dose and matched each case 1:2 to infection-free controls by cancer type, ICI agent, and time at risk. Demographics, comorbidities, cancer and treatment details, laboratory values, concomitant medications, and outcomes were extracted and analysed using conditional logistic regression. Cases (median age 62 years; 65.4% male) had predominance of gram-positive organisms (54.1%), led by Staphylococcus aureus (18.4%) and Enterococcus spp. (12.4%); gram-negatives comprised 37.8% with Escherichia coli being the most frequent (15.1%), and opportunistic pathogens (Listeria, Candida) made up 8.1%. Multivariable analysis identified prior corticosteroid use ≥14 days (prednisone equivalent ≥10 mg/day for ≥14 days; adjusted odds ratio [aOR], 4.12; 95% CI, 2.58–6.59; <i>p</i> &lt; 0.001), proton pump inhibitor use (aOR 2.05; 95% CI 1.31–3.22), and baseline absolute lymphocyte count &lt;1.0 × 10^9/L (aOR 2.33; 95% CI 1.48–3.68) as independent predictors. All-cause 30-day mortality among cases was 24.9%. BSIs in ICI-treated patients involve a broad pathogen spectrum, including opportunists and are associated with substantial mortality; corticosteroid exposure, PPI use, and lymphopenia identify high-risk patients who may benefit from targeted surveillance and preventive strategies.
DOI: 10.6084/m9.figshare.31113120.v1
title: Microbiological spectrum, clinical outcomes, and risk factors for bloodstream infections during immune checkpoint inhibitor therapy: a nested case-control study

description: Immune checkpoint inhibitors (ICIs) modulate host immunity and may increase infection risk. The pathogen profile, outcomes, and predictors of bloodstream infections (BSIs) in ICI recipients are not well defined; we aimed to characterise these features and identify independent risk factors. We performed a retrospective nested case–control study within a cohort of 2,584 adult cancer patients who received ICIs at a tertiary centre from January 2018 to December 2023. We identified 185 BSI cases occurring during or within 90 days after the last ICI dose and matched each case 1:2 to infection-free controls by cancer type, ICI agent, and time at risk. Demographics, comorbidities, cancer and treatment details, laboratory values, concomitant medications, and outcomes were extracted and analysed using conditional logistic regression. Cases (median age 62 years; 65.4% male) had predominance of gram-positive organisms (54.1%), led by Staphylococcus aureus (18.4%) and Enterococcus spp. (12.4%); gram-negatives comprised 37.8% with Escherichia coli being the most frequent (15.1%), and opportunistic pathogens (Listeria, Candida) made up 8.1%. Multivariable analysis identified prior corticosteroid use ≥14 days (prednisone equivalent ≥10 mg/day for ≥14 days; adjusted odds ratio [aOR], 4.12; 95% CI, 2.58–6.59; <i>p</i> &lt; 0.001), proton pump inhibitor use (aOR 2.05; 95% CI 1.31–3.22), and baseline absolute lymphocyte count &lt;1.0 × 10^9/L (aOR 2.33; 95% CI 1.48–3.68) as independent predictors. All-cause 30-day mortality among cases was 24.9%. BSIs in ICI-treated patients involve a broad pathogen spectrum, including opportunists and are associated with substantial mortality; corticosteroid exposure, PPI use, and lymphopenia identify high-risk patients who may benefit from targeted surveillance and preventive strategies.
DOI: 10.6084/m9.figshare.31113123
title: Efficacy of 0.5% Voriconazole Subpalpebral Lavage as Adjunctive Therapy: A Multicenter Prospective Study in Fungal Keratitis Management

description: To evaluate the efficacy of subpalpebral ocular continuous lavage (SOCL) with 0.5% voriconazole combined with systemic antifungals (SOCL+M) versus systemic antifungals alone (M) in fungal keratitis. This was a multicenter, prospective, non-randomized trial with masked outcome assessment. Treatment allocation—to either subpalpebral 0.5% voriconazole lavage combined with systemic antifungals or systemic antifungals monotherapy—was determined by patient preference and physician recommendation. The study protocol was standardized across sites through centralized training and adherence was monitored with monthly audits. The primary outcome was 3-month cure rate; secondary outcomes included penetrating keratoplasty (PKP) rate, hypopyon resolution time, and corneal parameter changes over one month. Compared to the M group, the SOCL+M group exhibited a significantly higher cure rate (69.0% vs. 40.7%; OR = 3.23, 95% CI: 1.49–7.03, <i>p</i> = 0.003) and a lower rate of penetrating keratoplasty (0% vs. 10%, <i>p</i> = 0.027) at the 3-month follow-up. The hypopyon resolution time occurred more rapidly in the SOCL+M group (6.79 ± 3.36 days vs. 10.06 ± 3.62 days, <i>p</i> = 0.009). Furthermore, the SOCL+M group showed significantly greater reductions in corneal infiltration, epithelial defect, and fungal density at 1 month compared to the M group (all <i>p</i> &lt; 0.05). SOCL represents an innovative adjunctive therapy for fungal keratitis, offering significant clinical advantages including accelerated corneal healing, higher cure rates, and reduced need for therapeutic keratoplasty, with strong translational potential.
DOI: 10.6084/m9.figshare.31113123.v1
title: Efficacy of 0.5% Voriconazole Subpalpebral Lavage as Adjunctive Therapy: A Multicenter Prospective Study in Fungal Keratitis Management

description: To evaluate the efficacy of subpalpebral ocular continuous lavage (SOCL) with 0.5% voriconazole combined with systemic antifungals (SOCL+M) versus systemic antifungals alone (M) in fungal keratitis. This was a multicenter, prospective, non-randomized trial with masked outcome assessment. Treatment allocation—to either subpalpebral 0.5% voriconazole lavage combined with systemic antifungals or systemic antifungals monotherapy—was determined by patient preference and physician recommendation. The study protocol was standardized across sites through centralized training and adherence was monitored with monthly audits. The primary outcome was 3-month cure rate; secondary outcomes included penetrating keratoplasty (PKP) rate, hypopyon resolution time, and corneal parameter changes over one month. Compared to the M group, the SOCL+M group exhibited a significantly higher cure rate (69.0% vs. 40.7%; OR = 3.23, 95% CI: 1.49–7.03, <i>p</i> = 0.003) and a lower rate of penetrating keratoplasty (0% vs. 10%, <i>p</i> = 0.027) at the 3-month follow-up. The hypopyon resolution time occurred more rapidly in the SOCL+M group (6.79 ± 3.36 days vs. 10.06 ± 3.62 days, <i>p</i> = 0.009). Furthermore, the SOCL+M group showed significantly greater reductions in corneal infiltration, epithelial defect, and fungal density at 1 month compared to the M group (all <i>p</i> &lt; 0.05). SOCL represents an innovative adjunctive therapy for fungal keratitis, offering significant clinical advantages including accelerated corneal healing, higher cure rates, and reduced need for therapeutic keratoplasty, with strong translational potential.
DOI: 10.6084/m9.figshare.31113336
title: Design of an oral vaccine against <i>Salmonella pullorum</i> using protein surface display on bioengineered <i>Saccharomyces cerevisiae</i>

description: <i>Salmonella enterica</i> subsp. <i>Salmonella Pullorum</i> is a concerned pathogenic microorganism that poses a serious threat to the global poultry industry due to high mortality in chicken. Acquired immunity is considered the most effective means to prevent and control <i>Salmonella pullorum</i>. However, safe and effective vaccines are still lacking worldwide. In this study, <i>Saccharomyces cerevisiae</i> was used as a chassis to design an oral vaccine for pullorum by displaying <i>Salmonella</i> fimbriae and outer membrane proteins on its surface. The results demonstrated that the engineered yeast EY-01 exhibited strong antigenicity as identification and capture by specific antibodies. In addition, oral administration of EY-01 significantly stimulated a 1.4- to 2.7-fold increase in antibody (IgG/A) and immune factors levels (IL-1β/2/4, IFN-γ) in chicks without affecting the growth performance. The ratios of CD4<sup>+</sup>/CD3<sup>+</sup> and CD8<sup>+</sup>/CD3<sup>+</sup> T cell subsets in peripheral blood were significantly increased by 2.1-fold. Importantly, 37.5% of chicks were protected from challenge with <i>Salmonella pullorum</i> after oral administration of EY-01. And the <i>Salmonella</i> load in various tissues, especially muscle, was significantly reduced by 7.2%–22.4%. Collectively, EY-01 is a safe and effective oral vaccine to against <i>Salmonella</i> infection in chicks and such surface display-based vaccine is potential to be used for decreasing the poultry diseases.
DOI: 10.6084/m9.figshare.31113336.v1
title: Design of an oral vaccine against <i>Salmonella pullorum</i> using protein surface display on bioengineered <i>Saccharomyces cerevisiae</i>

description: <i>Salmonella enterica</i> subsp. <i>Salmonella Pullorum</i> is a concerned pathogenic microorganism that poses a serious threat to the global poultry industry due to high mortality in chicken. Acquired immunity is considered the most effective means to prevent and control <i>Salmonella pullorum</i>. However, safe and effective vaccines are still lacking worldwide. In this study, <i>Saccharomyces cerevisiae</i> was used as a chassis to design an oral vaccine for pullorum by displaying <i>Salmonella</i> fimbriae and outer membrane proteins on its surface. The results demonstrated that the engineered yeast EY-01 exhibited strong antigenicity as identification and capture by specific antibodies. In addition, oral administration of EY-01 significantly stimulated a 1.4- to 2.7-fold increase in antibody (IgG/A) and immune factors levels (IL-1β/2/4, IFN-γ) in chicks without affecting the growth performance. The ratios of CD4<sup>+</sup>/CD3<sup>+</sup> and CD8<sup>+</sup>/CD3<sup>+</sup> T cell subsets in peripheral blood were significantly increased by 2.1-fold. Importantly, 37.5% of chicks were protected from challenge with <i>Salmonella pullorum</i> after oral administration of EY-01. And the <i>Salmonella</i> load in various tissues, especially muscle, was significantly reduced by 7.2%–22.4%. Collectively, EY-01 is a safe and effective oral vaccine to against <i>Salmonella</i> infection in chicks and such surface display-based vaccine is potential to be used for decreasing the poultry diseases.
DOI: 10.6084/m9.figshare.31113381
title: Genomic characterization of <i>Legionella pneumophila</i> serogroup 1 ST901 isolates responsible for recurrent travel-associated Legionnaires’ disease cases and clusters

description: Cases of travel-associated Legionnaires’ disease (TALD) are frequently reported in Italy. From 1987 to 2021, 61 cases of TALD were linked to 22 hotels in a municipality in northern Italy. <i>Legionella pneumophila</i> serogroup 1 (Lp1) strains isolated from both patients and hotel water systems were identified as sequence type (ST) 901, a genotype rarely associated with travel-related infections in Italy or elsewhere. Whole-genome sequencing was used to analyze 41 isolates, and phylogenetic relationships were inferred by core genome multilocus sequence typing (cgMLST), single nucleotide polymorphisms (SNP) and pangenome analyses. The Lp ST901 isolates were found to form a clade characterized by some accessory genomic islands (AGI) already described in other epidemic strains, such as Alcoy, Corby, Paris and Philadelphia; other islands, containing either transposase/recombinase or transcriptional regulator factors or Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-cas systems, were specific to Lp ST901. Lp ST901 also appears to have undergone possible recombination with other strains, such as Lp ST47 (Lorraine strain). Additionally, CRISPR-Cas systems may have contributed to the protection of Lp ST901 from external dangers, while the colonized hotel water systems may have provided an ideal environmental protective niche. Our findings highlight that Lp ST901 has public health significance and deserves attention in Legionnaires’ disease surveillance and risk assessment.
DOI: 10.6084/m9.figshare.31113381.v1
title: Genomic characterization of <i>Legionella pneumophila</i> serogroup 1 ST901 isolates responsible for recurrent travel-associated Legionnaires’ disease cases and clusters

description: Cases of travel-associated Legionnaires’ disease (TALD) are frequently reported in Italy. From 1987 to 2021, 61 cases of TALD were linked to 22 hotels in a municipality in northern Italy. <i>Legionella pneumophila</i> serogroup 1 (Lp1) strains isolated from both patients and hotel water systems were identified as sequence type (ST) 901, a genotype rarely associated with travel-related infections in Italy or elsewhere. Whole-genome sequencing was used to analyze 41 isolates, and phylogenetic relationships were inferred by core genome multilocus sequence typing (cgMLST), single nucleotide polymorphisms (SNP) and pangenome analyses. The Lp ST901 isolates were found to form a clade characterized by some accessory genomic islands (AGI) already described in other epidemic strains, such as Alcoy, Corby, Paris and Philadelphia; other islands, containing either transposase/recombinase or transcriptional regulator factors or Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-cas systems, were specific to Lp ST901. Lp ST901 also appears to have undergone possible recombination with other strains, such as Lp ST47 (Lorraine strain). Additionally, CRISPR-Cas systems may have contributed to the protection of Lp ST901 from external dangers, while the colonized hotel water systems may have provided an ideal environmental protective niche. Our findings highlight that Lp ST901 has public health significance and deserves attention in Legionnaires’ disease surveillance and risk assessment.
DOI: 10.5284/1139138
title: Digital Archive from an Archaeological Excavation at Lakeside Avenue, Lydney, Gloucestershire, January 2011-October 2012

description: This collection comprises images (including photographs of cremation burials), text, spreadsheets, databases, and vector data from an archaeological excavation on land south of Lakeside Avenue, Lydney, Gloucestershire. This work was undertaken by Cotswold Archaeology between January 2011 and October 2012. The earliest identified remains were several dispersed pits containing Beaker period pottery and a Middle Bronze Age cremation cemetery comprising 29 cremation burials. The main occupation of the site began in the Late Iron Age when an enclosure was established on a ridge of higher ground. The enclosure underwent several episodes of alterations throughout the Late Iron Age/Early Roman period, and in the 2nd or 3rd century AD, it was replaced by a series of smaller enclosures. A number of probable post-built structures were identified within the internal area of the earlier enclosure and a further possible post-built structure was focused on a contemporary boundary ditch to the south-west. The enclosures appeared to have fallen out of use by the 3rd or 4th centuries AD. Activity of this date was primarily agricultural, comprising elements of a field system, a possible post-line, and several curvilinear gullies.
DOI: 10.5281/zenodo.18326746
title: Wikipedia-Korpus: Korpusquellen der deutschsprachigen Wikipedia im TEI-Format

description: Das Wikipedia-Korpus auf dwds.de enthält Volltexte aus den Artikeln aus der deutschsprachigen Wikipedia auf der Basis des Datenbank-Abzugs vom 1.1. 2026. Texte aus anderen Seitenarten (Diskussionen etc.) wurden nicht aufgenommen.

Das Korpus wurde so konzipiert, dass es sich insbesondere für die Recherche nach (fach)sprachlichen lexikographischen Belegen eignet. Deshalb wurden bei der automatischen Korpuskuration die Artikeltexte so weit wie möglich um Textteile bereinigt, die nicht satzförmig oder nicht deutschsprachig sind. Dies betrifft unter anderem Überschriften, Tabellen, Literaturangaben und fremdsprachliche Zitate, soweit diese in den Wikipedia-Quellen als solche ausgezeichnet sind.

Verfügbar sind hier die Quellen des Wikipedia-Korpus auf dwds.de im XML/TEI-Format als teiCorpus-Datei. Wie die originalen Wikipedia-Artikel stehen sie unter der Lizenz "Creative Commons Attribution/Share Alike".
DOI: 10.5281/zenodo.7568490
title: Wikipedia-Korpus: Korpusquellen der deutschsprachigen Wikipedia im TEI-Format

description: Das Wikipedia-Korpus auf dwds.de enthält Volltexte aus den Artikeln aus der deutschsprachigen Wikipedia auf der Basis des Datenbank-Abzugs vom 1.1. 2026. Texte aus anderen Seitenarten (Diskussionen etc.) wurden nicht aufgenommen.

Das Korpus wurde so konzipiert, dass es sich insbesondere für die Recherche nach (fach)sprachlichen lexikographischen Belegen eignet. Deshalb wurden bei der automatischen Korpuskuration die Artikeltexte so weit wie möglich um Textteile bereinigt, die nicht satzförmig oder nicht deutschsprachig sind. Dies betrifft unter anderem Überschriften, Tabellen, Literaturangaben und fremdsprachliche Zitate, soweit diese in den Wikipedia-Quellen als solche ausgezeichnet sind.

Verfügbar sind hier die Quellen des Wikipedia-Korpus auf dwds.de im XML/TEI-Format als teiCorpus-Datei. Wie die originalen Wikipedia-Artikel stehen sie unter der Lizenz "Creative Commons Attribution/Share Alike".
DOI: 10.5281/zenodo.18327477
title: LINF_310032300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18327478
title: LINF_310032300

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18327455
title: Matriz de resultados de rinitis alérgica asociada a síntomas oculares
DOI: 10.5281/zenodo.18327456
title: Matriz de resultados de rinitis alérgica asociada a síntomas oculares
DOI: 10.5281/zenodo.18327376
title: Online repository for surface roughnesses of Chang'E-5 and Chang'E-6 lunar samples