cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1387484.10fu
title: SH1387484.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1387489.10fu
title: SH1387489.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1387490.10fu
title: SH1387490.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1387491.10fu
title: SH1387491.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.r79x46
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"MEX.6.34_2","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005911-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1387492.10fu
title: SH1387492.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1387498.10fu
title: SH1387498.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1387499.10fu
title: SH1387499.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1387504.10fu
title: SH1387504.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.15320044
title: Table 1 in Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia

description: Table 1. Isolates of endophytic fungi obtained from mangrove trees in San Pedro Nature Reserve, Buenaventura, Colombia.
Fungal speciesIsolate numberHostGenBank codes ITSBipolaris sp.COLPR-12Pelliciera. rhizophoraeMW029957Bipolaris sp.COLPR-15P. rhizophoraeMW029956Ciboria aestivalis (Pollock) WhetzelCOLLR-3Laguncularia racemosaMW029950Coprinellus radians (Desm.) Vilgalys, Hopple & Jacq. JohnsonCOLRR-11Rhizophorae racemosaMW029960Cylindrobasidium torrendii (Bres.) HjortstamCOLLR-1L. racemosaMW029959C. torrendiiCOLPR-13P. rhizophoraeMW029958Epicoccum nigrum LinkCOLRR-10R. racemosaMW029955Fusarium oxysporum Schltdl.COLLR-2L. racemosaMW029951F. oxysporumCOLPR-14P. rhizophoraeMW029952F.oxysporumCOLMO-16Mora oleiferaMW029953Lasiodiplodia theobromae (Pat.) Griffon & Maubl.COLLR-17L. racemosaMW029949L. venezuelensis T.I. Burgess, P.A. Barber & MohaliCOLRR-9R. racemosaMW029948Neofusicoccum batangarum Begoude, Jol. Roux & SlippersCOLLR-5L. racemosaMW029944N. batangarumCOLRR-8R. racemosaMW029945Neofusicoccum sp.COLRR-6R. racemosaMW029946Neofusicoccum sp.COLRR-7R. racemosaMW029947Neurospora crassa Shear & B.O. DodgeCOLLR-4L. racemosaMW029954
description: Published as part of Vallejo, Sandra Viviana, Rojas, Andrés Mauricio, Linnakoski, Riikka & Osorio, Jhon Alexander, 2024, Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia, pp. 36 in Caldasia 46 (1) on page 36, DOI: 10.15446/caldasia.v46n1.97134, http://zenodo.org/record/15265051
DOI: 10.5281/zenodo.15320045
title: Table 1 in Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia

description: Table 1. Isolates of endophytic fungi obtained from mangrove trees in San Pedro Nature Reserve, Buenaventura, Colombia.
Fungal speciesIsolate numberHostGenBank codes ITSBipolaris sp.COLPR-12Pelliciera. rhizophoraeMW029957Bipolaris sp.COLPR-15P. rhizophoraeMW029956Ciboria aestivalis (Pollock) WhetzelCOLLR-3Laguncularia racemosaMW029950Coprinellus radians (Desm.) Vilgalys, Hopple & Jacq. JohnsonCOLRR-11Rhizophorae racemosaMW029960Cylindrobasidium torrendii (Bres.) HjortstamCOLLR-1L. racemosaMW029959C. torrendiiCOLPR-13P. rhizophoraeMW029958Epicoccum nigrum LinkCOLRR-10R. racemosaMW029955Fusarium oxysporum Schltdl.COLLR-2L. racemosaMW029951F. oxysporumCOLPR-14P. rhizophoraeMW029952F.oxysporumCOLMO-16Mora oleiferaMW029953Lasiodiplodia theobromae (Pat.) Griffon & Maubl.COLLR-17L. racemosaMW029949L. venezuelensis T.I. Burgess, P.A. Barber & MohaliCOLRR-9R. racemosaMW029948Neofusicoccum batangarum Begoude, Jol. Roux & SlippersCOLLR-5L. racemosaMW029944N. batangarumCOLRR-8R. racemosaMW029945Neofusicoccum sp.COLRR-6R. racemosaMW029946Neofusicoccum sp.COLRR-7R. racemosaMW029947Neurospora crassa Shear & B.O. DodgeCOLLR-4L. racemosaMW029954
description: Published as part of Vallejo, Sandra Viviana, Rojas, Andrés Mauricio, Linnakoski, Riikka & Osorio, Jhon Alexander, 2024, Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia, pp. 36 in Caldasia 46 (1) on page 36, DOI: 10.15446/caldasia.v46n1.97134, http://zenodo.org/record/15265051
DOI: 10.5281/zenodo.15320047
title: Table 2 in Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia

description: Table 2. Phytochemical analysis for the detection of secondary metabolites present in extracts of endophytic fungi isolated from mangrove tree branches from the San Pedro Buenaventura Natural Reserve, Valle del Cauca, Colombia. - = Absence of metabolite; + = Presence of metabolite.
Secondary metabolitesEndophytic fungiHostAlkaloidsDiterpenes - steroidsPhenolsFlavonoidsTerpenesBipolaris sp.Pelliciera rhizophorae+++++C. aestivalisLaguncularia racemosa-++++Culture mediaC. radiansRhizophora racemosa-+-++F. oxysporumP. rhizophorae---+-L. venezuelensisR. racemosa++-++Neofusicoccum sp.R. racemosa-+-++N. crassaL. racemosa--+-+Bipolaris sp.P. rhizophorae+++++C. radiansR. racemosa-+-++MyceliumF. oxysporumP. rhizophorae++-++L. venezuelensisR. racemosa-+--+N. crassaL. racemosa-++++
description: Published as part of Vallejo, Sandra Viviana, Rojas, Andrés Mauricio, Linnakoski, Riikka & Osorio, Jhon Alexander, 2024, Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia, pp. 37 in Caldasia 46 (1) on page 37, DOI: 10.15446/caldasia.v46n1.97134, http://zenodo.org/record/15265051
DOI: 10.5281/zenodo.15320046
title: Table 2 in Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia

description: Table 2. Phytochemical analysis for the detection of secondary metabolites present in extracts of endophytic fungi isolated from mangrove tree branches from the San Pedro Buenaventura Natural Reserve, Valle del Cauca, Colombia. - = Absence of metabolite; + = Presence of metabolite.
Secondary metabolitesEndophytic fungiHostAlkaloidsDiterpenes - steroidsPhenolsFlavonoidsTerpenesBipolaris sp.Pelliciera rhizophorae+++++C. aestivalisLaguncularia racemosa-++++Culture mediaC. radiansRhizophora racemosa-+-++F. oxysporumP. rhizophorae---+-L. venezuelensisR. racemosa++-++Neofusicoccum sp.R. racemosa-+-++N. crassaL. racemosa--+-+Bipolaris sp.P. rhizophorae+++++C. radiansR. racemosa-+-++MyceliumF. oxysporumP. rhizophorae++-++L. venezuelensisR. racemosa-+--+N. crassaL. racemosa-++++
description: Published as part of Vallejo, Sandra Viviana, Rojas, Andrés Mauricio, Linnakoski, Riikka & Osorio, Jhon Alexander, 2024, Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia, pp. 37 in Caldasia 46 (1) on page 37, DOI: 10.15446/caldasia.v46n1.97134, http://zenodo.org/record/15265051
DOI: 10.5281/zenodo.15320048
title: Table 3 in Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia

description: Table 3. Presence of 23 compounds from Bipolaris sp., Coprinellus radians and Fusarium oxysporum species identified through gas chromatography coupled to mass spectrometry.
Fungal generaCompoundsRetention time (min)Bipolaris sp.Coprinellus radiansFusarium oxysporum2-aminopyridine11.25XXBornyl acetate29.5XXXCarvone35.46XXXCaryophyllene59.31XCitronelal28.32XXXDecanal32.41XDodecanol40.67XXXEthyl isovalerate5.2XXXEucalyptol27.05XFerulic acid37.55Xg-decalactone39.26XHeptadecane54.34XXXHexanoic acid5.09XXXHydnocarpic acid32.37XXXLauric Acid49.2XXXMacrophomic acid39.79XMenthyl acetate32.57XXXo -phenylphenol38.46XXPinosilvina44.85XPiperonal38.85XStearic Acid57.86XXXSulcatone25.7XXXUnknown Diterpene55.19X
description: Published as part of Vallejo, Sandra Viviana, Rojas, Andrés Mauricio, Linnakoski, Riikka & Osorio, Jhon Alexander, 2024, Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia, pp. 40 in Caldasia 46 (1) on page 40, DOI: 10.15446/caldasia.v46n1.97134, http://zenodo.org/record/15265051
DOI: 10.5281/zenodo.15320049
title: Table 3 in Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia

description: Table 3. Presence of 23 compounds from Bipolaris sp., Coprinellus radians and Fusarium oxysporum species identified through gas chromatography coupled to mass spectrometry.
Fungal generaCompoundsRetention time (min)Bipolaris sp.Coprinellus radiansFusarium oxysporum2-aminopyridine11.25XXBornyl acetate29.5XXXCarvone35.46XXXCaryophyllene59.31XCitronelal28.32XXXDecanal32.41XDodecanol40.67XXXEthyl isovalerate5.2XXXEucalyptol27.05XFerulic acid37.55Xg-decalactone39.26XHeptadecane54.34XXXHexanoic acid5.09XXXHydnocarpic acid32.37XXXLauric Acid49.2XXXMacrophomic acid39.79XMenthyl acetate32.57XXXo -phenylphenol38.46XXPinosilvina44.85XPiperonal38.85XStearic Acid57.86XXXSulcatone25.7XXXUnknown Diterpene55.19X
description: Published as part of Vallejo, Sandra Viviana, Rojas, Andrés Mauricio, Linnakoski, Riikka & Osorio, Jhon Alexander, 2024, Chemical analysis of endophytic fungi isolated from mangrove trees in Playa San Pedro Nature Reserve, Buenaventura, Valle del Cauca, Colombia, pp. 40 in Caldasia 46 (1) on page 40, DOI: 10.15446/caldasia.v46n1.97134, http://zenodo.org/record/15265051
DOI: 10.15468/dl.krj95c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Apus sladeniae (Ogilvie-Grant, 1904))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011729-230224095556074/datasets/export for details.
DOI: 10.15468/dl.8swqh2
title: Occurrence Download

description: A dataset containing 1522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galphimia glauca Cav.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1522 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005034-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k39ys5
title: Occurrence Download

description: A dataset containing 645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Leucopternis kuhli",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 645 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075256-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48n2bu
title: Occurrence Download

description: A dataset containing 8888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sporophila telasco (R.Lesson, 1828))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8888 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004399-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8kmu2
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Apus berliozi Ripley, 1966)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 315 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011732-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbqfg4
title: Occurrence Download

description: A dataset containing 498 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoebanthus grandiflora (Torr. & A.Gray) S.F.Blake"
 ]
}

 The dataset includes 498 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075304-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4beg75
title: Occurrence Download

description: A dataset containing 1329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Specimen, Living Specimen, Occurrence evidence)",
 "TaxonKey is Enallopsammia rostrata (Pourtalès, 1878)"
 ]
}

 The dataset includes 1329 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005629-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78syb3
title: Occurrence Download

description: A dataset containing 6813 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Sistrurus Garman, 1884"
 ]
}

 The dataset includes 6813 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055386-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7cctk
title: Occurrence Download

description: A dataset containing 876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "Country is Pakistan"
 ]
}

 The dataset includes 876 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025474-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.