cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cg6hj
title: Data from: Mutualistic mimicry enhances species diversification through spatial segregation and extension of the ecological niche space

description: Species richness varies among clades, yet the drivers of diversification
 creating this variation remain poorly understood. While abiotic factors
 likely drive some of the variation in species richness, ecological
 interactions may also contribute. Here, we examine one class of potential
 contributors to species richness variation that is particularly poorly
 understood: mutualistic interactions. We aim to elucidate large-scale
 patterns of diversification mediated by mutualistic interactions using a
 spatially-explicit population-based model. We focus on mutualistic
 Müllerian mimicry between conspicuous toxic prey species, where
 convergence in colour patterns emerges from predators' learning
 process. To investigate the effects of Müllerian mimicry on species
 diversification, we assume that some speciation events stem from shifts in
 ecological niches, and can also be associated with shift in mimetic colour
 pattern. Through the emergence of spatial mosaics of mimetic colour
 patterns, Müllerian mimicry constrains the geographical distribution of
 species and allows different species with similar ecological niches to
 exist simultaneously in different regions. Müllerian mimicry and the
 resulting spatial segregation of mimetic colour patterns thus generate
 more balanced phylogenetic trees and increase overall species diversity.
 Our study sheds light on complex effects of Müllerian mimicry on
 ecological, spatial and phylogenetic diversification.
description: Code
 C++Code to run simulations
 and to produce the raw data: species repartition, morph repartition,
 species characteristics
DOI: 10.5061/dryad.8hs46jv
title: Data from: Prey exploitation and dispersal strategies vary among natural populations of a predatory mite

description: When predators commonly overexploit local prey populations, dispersal
 drives the dynamics in local patches, which together form a
 metapopulation. Two extremes in a continuum of dispersal strategies are
 distinguished: the “Killer” strategy, where predators only start
 dispersing when all prey are eliminated, and the “Milker” strategy, in
 which predator dispersal occurs irrespective of prey availability. Theory
 shows that the Milker strategy is not evolutionarily stable if local
 populations are well connected by dispersal. Using strains of the
 predatory mite Phytoseiulus persimilis, collected from 11 native
 populations from coastal areas in Turkey and Sicily, we investigated
 whether these two strategies occur in nature. In small wind tunnels, we
 measured dispersal rates and population dynamics of all populations in a
 system consisting of detached rose leaves, spider mites (Tetranychus
 urticae) as prey, and P. persimilis. We found significant variation in the
 exploitation and dispersal strategies among predator populations, but none
 of the collected strains showed the extreme Killer or Milker strategy. The
 results suggest that there is genetic variation for prey exploitation and
 dispersal strategies. Thus, different dispersal strategies in the
 Milker–Killer continuum may be selected for under natural conditions. This
 may affect the predator–prey dynamics in local populations and is likely
 to determine persistence of predator–prey systems at the metapopulation
 level.
description: Data
DOI: 10.5061/dryad.5k414
title: Data from: Adaptive plasticity and genetic divergence in feeding efficiency during parallel adaptive radiation of whitefish (Coregonus spp.)

description: Parallel phenotypic divergence in replicated adaptive radiations could
 either result from parallel genetic divergence in response to similar
 divergent selection regimes, or from equivalent phenotypically plastic
 response to the repeated occurrence of contrasting environments. In
 postglacial fish replicated divergence in phenotypes along the
 benthic-limnetic habitat axis is commonly observed. Here we use two
 benthic-limnetic species pairs of whitefish from two Swiss lakes, raised
 in a common garden design, with reciprocal food treatments in one species
 pair, to experimentally measure whether feeding efficiency on benthic prey
 has a genetic basis or whether it underlies phenotypic plasticity (or
 both). To do so we offered experimental fish mosquito larvae, partially
 burried in sand, and measured multiple feeding efficiency variables. Our
 results reveal both, genetic divergence as well as phenotypically plastic
 divergence in feeding efficiency, with the phenotypically benthic species
 raised on benthic food being the most efficient forager on benthic prey.
 This indicates that both, divergent natural selection on genetically
 heritable traits and adaptive phenotypic plasticity, are likely important
 mechanisms driving phenotypic divergence in adaptive radiation.
description: data_ms_jeb-2012-00676The data file contains all relevant data for this article. Any description of what the data is can be found in the ReadMe File.
DOI: 10.6084/m9.figshare.28644923
title: Identifying Climate and Environmental Determinants of Spatial Disparities in Wheat Production Using a Geospatial Machine Learning Model

description: Dataset and codes for a geospatial machine learning model.
DOI: 10.6084/m9.figshare.28644923.v3
title: Identifying Climate and Environmental Determinants of Spatial Disparities in Wheat Production Using a Geospatial Machine Learning Model

description: Dataset and codes for a geospatial machine learning model.
DOI: 10.5061/dryad.qg87n
title: Data from: Change in quality of life for patients with Irritable Bowel Syndrome following referral to a gastroenterologist: a cohort study

description: Background: Irritable bowel syndrome (IBS), a chronic functional
 condition, considerably reduces quality of life (QoL) and referral to
 gastroenterology is common. Until now, however, the impact of seeing a
 gastroenterologist for IBS on patients’ QoL and utility has not been
 assessed. Methods: Patients referred with “probable IBS” to the Nottingham
 Treatment Centre between October 2012 and March 2014 were invited to
 complete a QoL questionnaire (EuroQol–5 Dimension) before their first
 appointment. Patients with confirmed IBS who completed this baseline
 assessment were sent follow-up questionnaires three and twelve months
 later. Global QoL and utility were measured at each time point and change
 from baseline calculated. Paired t-tests analysed the significance of any
 change. Results: Of 205 invited patients, 69 were eligible and recruited.
 Response at three and twelve months was 45% and 17% respectively. Median
 global QoL at baseline was 67.5 (Interquartile range [IQR] 50.0 to 80.0),
 with a mean increase of 3.25 (95% confidence interval [CI] -5.38 to 11.88)
 three months later and a mean decrease of -1.82 (95% CI -16.01 to 12.38)
 after one year. The median utility at baseline was 0.76 (IQR 0.69 to
 0.80), with a mean increase of 0.06 (95%CI -0.01 to 0.14) at three months
 and no change, 0.00 (-0.16 to 0.16), after one year. Conclusion: Patients
 experienced a small but not statistically significant increase in QoL and
 utility three months after seeing a gastroenterologist for IBS, which was
 not maintained. Gastroenterology referral does not appear to appreciably
 improve Qol for most people with IBS.
description: anonymised responses of
 those recuitedEQ5D responses over
 three rounds. Sex and age stratification data. All EQ5D scores in raw form
 to be entered into state valuation algorythm
DOI: 10.6084/m9.figshare.28644923.v2
title: Identifying Climate and Environmental Determinants of Spatial Disparities in Wheat Production Using a Geospatial Machine Learning Model

description: Dataset and codes for a geospatial machine learning model.
DOI: 10.5061/dryad.5tt4r
title: Data from: The magnitude of local adaptation under genotype-dependent dispersal

description: Dispersal moves individuals from patches where their immediate ancestors
 were successful to sites where their genotypes are untested. As a result,
 dispersal generally reduces fitness, a phenomenon known as “migration
 load.” The strength of migration load depends on the pattern of dispersal
 and can be dramatically lessened or reversed when individuals move
 preferentially toward patches conferring higher fitness. Evolutionary
 ecologists have long modeled nonrandom dispersal, focusing primarily on
 its effects on population density over space, the maintenance of genetic
 variation, and reproductive isolation. Here, we build upon previous work
 by calculating how the extent of local adaptation and the migration load
 are affected when individuals differ in their dispersal rate in a
 genotype-dependent manner that alters their match to their environment.
 Examining a one-locus, two-patch model, we show that local adaptation
 occurs through a combination of natural selection and adaptive dispersal.
 For a substantial portion of parameter space, adaptive dispersal can be
 the predominant force generating local adaptation. Furthermore, genetic
 load may be largely averted with adaptive dispersal whenever individuals
 move before selective deaths occur. Thus, to understand the mechanisms
 driving local adaptation, biologists must account for the extent and
 nature of nonrandom, genotype-dependent dispersal, and the potential for
 adaptation via spatial sorting of genotypes.
description: blackwater lake stream
 morphologyHere we provide the data
 table required to recreate Figure 1 from Bolnick and Otto, "The
 magnitude of local adaptation under genotype-dependent dispersal,"
 published in Ecology and Evolution. The data table presents clinical data
 of threespine stickleback across a lake-stream interface, demonstrating
 remarkably abrupt transition in phenotype between these habitats. The data
 comes from samples collected and measured as described in Bolnick,D.I. L.
 Snowberg, C. Patenia, O. L. Lau, W. E. Stutz, and T. Ingram. 2009.
 Phenotype-dependent native habitat preference facilitates divergence
 between parapatric lake and stream stickleback. Evolution 63:2004-2016.
 However, the analyses in the present figure 1 of Bolnick and Otto are a
 novel reanalysis of that prior data.
DOI: 10.5061/dryad.c92k731
title: Data from: Identifying native plants for coordinated habitat management of arthropod pollinators, herbivores and natural enemies

description: 1. Providing non-crop flowering resources in agricultural landscapes is
 widely promoted as a strategy to support arthropods that deliver
 pollination and pest control services. However, management options have
 largely been developed separately for pollinators and natural enemies,
 whereas possible effects on insect herbivores, such as crop pests, have
 often been overlooked. A first critical step for design and implementation
 of multifunctional plantings that promote beneficial arthropods while
 controlling insect pests is to identify suitable plant species to use. 2.
 We aimed to identify California native plants and, more generally, plant
 traits suitable for the coordinated management of pollinators (wild bees
 and honey bees), insect herbivores and arthropod natural enemies
 (predators and parasitic wasps). We established 43 plant species in a
 common garden experiment and sampled arthropods by weekly netting (wild
 bees), observations (honey bees) or vacuum sampling (insect herbivores,
 arthropod predators and parasitic wasps) during peak bloom of each plant
 species over two years. 3. Plant species differed in attractiveness for
 each arthropod functional group. Floral area of the focal plant species
 positively affected honey bee, predator and parasitic wasp attractiveness.
 Later bloom period was associated with lower numbers of parasitic wasps.
 Flower type (actinomorphic, composite or zygomorphic) predicted
 attractiveness for honey bees, which preferred actinomorphic over
 composite flowers and for parasitic wasps, which preferred composite
 flowers over actinomorphic flowers. 4. Across plant species, herbivore,
 predator and parasitic wasp abundances were positively correlated, and
 honey bee abundance correlated negatively to herbivore abundance. 5.
 Synthesis and applications. We use data from our common garden experiment
 to inform evidence-based selection of plants that support pollinators and
 natural enemies without enhancing potential pests. We recommend selecting
 plant species with a high floral area per ground area unit, as this metric
 predicts the abundances of several groups of beneficial arthropods.
 Multiple correlations between functionally important arthropod groups
 across plant species stress the importance of a multifunctional approach
 to arthropod habitat management.
description: Number of arthropods
 collected in each plot and year.Dataset with number of
 arthropods collected in each plot and year.LundinEtAlJAEdata.csv
DOI: 10.5061/dryad.mq2jr
title: Data from: Silicone wristbands detect individuals' pesticide exposures in West Africa

description: We detected between 2 and 10 pesticides per person with novel sampling
 devices worn by 35 participants who were actively engaged in farming in
 Diender, Senegal. Participants were recruited to wear silicone wristbands
 for each of two separate periods of up to 5 days. Pesticide exposure
 profiles were highly individualized with only limited associations with
 demographic data. Using a 63-pesticide dual-column gas
 chromatography–electron capture detector (GC-ECD) method, we detected
 pyrethoid insecticides most frequently, followed by organophosphate
 pesticides which have been linked to adverse health outcomes. This work
 provides the first report of individualized exposure profiles among
 smallholder farmers in West Africa, where logistical and practical
 constraints have prevented the use of more traditional approaches to
 exposure assessment in the past. The wristbands and associated analytical
 method enabled detection of a broad range of agricultural, domestic,
 legacy and current-use pesticides, including esfenvalerate, cypermethrin,
 lindane, DDT and chlorpyrifos. Participants reported the use of 13
 pesticide active ingredients while wearing wristbands. All six of the
 pesticides that were both reportedly used and included in the analytical
 method were detected in at least one wristband. An additional 19 pesticide
 compounds were detected beyond those that were reported to be in use,
 highlighting the importance of measuring exposure in addition to
 collecting surveys and self-reported use records. The wristband method is
 a candidate for more widespread use in pesticide exposure and health
 monitoring, and in the development of evidence-based policies for human
 health protection in an area where food security concerns are likely to
 intensify agricultural production and pesticide use in the near future.
description: SI_2Concentrations are ng/g
 wristband. Compounds below the detection limit were assigned a value equal
 to 1/2 detection limit. Compounds between detection and quantitation
 limits were assigned a value of 1/2 quantitation limit. Gender and age
 data are removed to maintain participant anonymity.
DOI: 10.5061/dryad.cm736
title: Data from: Relatedness within and between leks of golden-collared manakin differ between sexes and age classes

description: Several hypotheses have been advanced to explain the evolution of leks, a
 mating system in which males aggregate at display sites where females
 choose their mates. Only a small proportion of males obtain copulations,
 and why other males join the lek remains unexplained. One hypothesis has
 called kin selection into play: if juvenile males join leks where their
 relatives display and contribute to attract females to the lek, they can
 gain indirect fitness benefits. We investigated the genetic structure of
 eight leks of golden-collared manakin, a tropical Passerine. Adult
 court-holder males, females, and immature males were caught within lek
 boundaries and the geographical location of the courts was recorded. For
 court-holding males, within-lek relatedness among four leks was
 significantly higher than average across-lek relatedness. Courts of more
 closely related males were not spatially associated within leks.
 Relatedness among immature males was relatively lower, yet higher within
 than between leks. Values of relatedness and genetic differentiation among
 leks were even lower for females. Thus, leks were composed of males that
 were more related to each other than to other males of the population, and
 the degree of relatedness decreased from court holding males to immature
 males to females. This suggests that immature males explore several leks
 and eventually join those where their relatives display, whereas females
 appear to visit leks randomly with respect to relatedness. Our results
 provide support for the hypothesis that kin selection influences the
 evolution of lekking behavior in this species.
description: Fusani et al - Manacus
 vitellinus microsatellite allele frequenciesAllele frequencies at 8
 microsatellite loci in adult male, females and juvenile male Manacus
 vitellinusFusani_et_al_Manacus_vitellinus_microsat_frequencies.xlsx
DOI: 10.5061/dryad.02rg3
title: Data from: Alloparenting is associated with reduced maternal lactation effort and faster weaning in wild chimpanzees

description: Alloparenting, when individuals other than the mother assist with infant
 care, can vary between and within populations and has potential fitness
 costs and benefits for individuals involved. We investigated the effects
 of alloparenting on the speed with which infants were weaned, a potential
 component of maternal fitness because of how it can affect inter-birth
 intervals, in wild chimpanzees (Pan troglodytes schweinfurthii) at Ngogo,
 Uganda. We also provide, to our knowledge, the first description of
 alloparenting in this population and present a novel measure of the
 contribution of milk to infant diets through faecal stable nitrogen
 isotopes (δ15N). Using 42 mother–infant pairs, we tested associations of
 two alloparenting dimensions, natal attraction (interest in infants) and
 infant handling (holding, carrying), to the proportion of time mothers
 spent feeding and to maternal lactation effort (mean nursing rates and
 mother–infant δ15N differences). Neither natal attraction nor infant
 handling was significantly associated with feeding time. Infant handling
 was inversely associated with both measures of lactation effort, although
 natal attraction showed no association. Alloparenting may benefit mothers
 by enabling females to invest in their next offspring sooner through
 accelerated weaning. Our findings emphasize the significance of
 alloparenting as a flexible component of female reproductive strategies in
 some species.
description: Badescuetal-GEE-SpreadsheetThese are the data on which we ran all of the Generalized Estimating Equations analyses, to see how natal attraction and infant handling correlated with nursing rates, maternal feeding time, stable nitrogen isotope difference, maternal parity, infant age, and infant sex.RSOS-Dryad-Badescuetal-GEE-Spreadsheet.xlsx
DOI: 10.5061/dryad.54tv7
title: Data from: Mutual plumage ornamentation and biparental care: consequences for success in different environments

description: According to the good parent and differential allocation models, parental
 behavior could depend on the individual’s own quality, and it could be
 adjusted to the coinvestor’s parental care and sexual ornamentation. These
 investment patterns may interact with environmental conditions and
 offspring quality in determining reproductive success. Few studies have
 considered ornament-related own and partner care of both parents and their
 consequences in relation to environmental conditions. In a brood size
 manipulation experiment on collared flycatchers (Ficedula albicollis), we
 measured nestling feeding rates, white patch sizes and plumage reflectance
 properties of both parents, and quantified nestling growth and
 reproductive success. We found little relationship between ornamentation
 and own feeding rate irrespective of manipulation. Parental quality,
 measured as nestling biomass production per unit feeding effort, was
 related to male structural plumage brightness in a manipulation-dependent
 manner. Male wing patch size and the female’s structural plumage
 brightness were linked to the partner’s feeding rate, and this did not
 vary with experimental environment. Finally, relationship of prefledging
 nestling size with male forehead patch size was environment-dependent, and
 this pattern was apparently due to intrinsic nestling characteristics.
 Reproductive success only partly reflected these findings. Our results
 indicate how integrated studies of mutual ornamentation and mutual care
 with environmental and offspring quality may help us better grasp the
 selection forces shaping sexual ornaments.
description: Single tabulated data
 setContains all data used
 in the analyses published in the paper.trBEdata.csv
DOI: 10.15468/dl.nvbf89
title: Occurrence Download

description: A dataset containing 1076 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sparganothis pilleriana"
 ]
}

 The dataset includes 1076 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001365-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.8p97m88
title: Data from: A non-coding region near Follistatin controls head colour polymorphism in the Gouldian finch

description: Discrete color morphs coexisting within a single population are common in
 nature. In a broad range of organisms, sympatric color morphs often
 display major differences in other traits, including morphology,
 physiology, or behavior. Despite the repeated occurrence of this
 phenomenon, our understanding of the genetics that underlie multi-trait
 differences and the factors that promote the long-term maintenance of
 phenotypic variability within a freely interbreeding population are
 incomplete. Here, we investigated the genetic basis of red and black head
 color in the Gouldian finch (Erythrura gouldiae), a classic polymorphic
 system in which naturally occurring color morphs also display differences
 in aggressivity and reproductive success. We show that the candidate locus
 is a small (~70 Kb) non-coding region mapping to the Z-chromosome near the
 Follistatin (FST) gene. Unlike recent findings in other systems where
 phenotypic morphs are explained by large inversions containing hundreds of
 genes (so-called ‘supergenes’), we did not identify any structural
 rearrangements between the two haplotypes using linked-read sequencing
 technology. Nucleotide divergence between the red and black alleles was
 high when compared to the remainder of the Z-chromosome, consistent with
 their maintenance as balanced polymorphisms over several million years.
 Our results illustrate how pleiotropic phenotypes can arise from simple
 genetic variation, likely regulatory in nature.
description: raw qPCR results from
 skinqPCR values per
 individual from skin of black and red color morphsToomey_et_al_2018_skin_qPCR.csvraw qPCR results from testesqPCR values per individual from testes of black and red color morphsToomey_et_al_2018_testes_qPCR.csvtranscript isoformsAlternative transcript isoforms of MOCS2 and FST expressed in the regenerating mask skin.isoforms.seq