cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/bhhpyw
title: Genomic divergence and introgression between cryptic species of a widespread North American songbird

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Analysis of genomic variation among related populations can sometimes reveal distinct species that were previously undescribed due to similar morphological appearances, and close examination of such cases can provide much insight regarding speciation. Genomic data can also reveal the role of reticulated evolution in differentiation and speciation. White-breasted nuthatches (&lt;em&gt;Sitta carolinensis&lt;/em&gt;) are widely distributed North American songbirds that are currently classified as a single species but have been suspected to represent a case of cryptic speciation. Previous genetic analyses suggested four divergent groups, but it was unclear whether these represented multiple reproductively isolated species. Using extensive genomic sampling of over 350 white-breasted nuthatches from across North America and a new chromosome-level reference genome, we asked if white-breasted nuthatches are comprised of multiple species and whether introgression has occurred between divergent populations. Genomic variation of over 300,000 loci revealed four highly differentiated populations (Pacific, n = 45; Eastern, n = 23; Rocky Mountains North, n = 138; and Rocky Mountains South, n = 150) with geographic ranges that are adjacent. We observed a moderate degree of admixture between Rocky Mountain populations but only a small number of hybrids between the Rockies and the Eastern population. The rarity of hybrids together with high levels of differentiation between populations is supportive of populations having some level of reproductive isolation. Between populations, we show evidence for introgression from a divergent ghost lineage of white-breasted nuthatches into the Rocky Mountains South population, which is otherwise closely related to Rocky Mountains North. We conclude that white-breasted nuthatches are best considered at least 3 species and that ghost lineage introgression has contributed to differentiation between the two Rocky Mountain populations. White-breasted nuthatches provide a dramatic case of morphological similarity despite high genomic differentiation, and the varying levels of reproductive isolation among the four groups provide an example of the speciation continuum. &lt;/p&gt;
description: &lt;b&gt;Methods&lt;/b&gt;&lt;br /&gt;&lt;p&gt;Genetic samples were collected from the field and museum specimens. DNA was extracted from samples and used to prepare GBS (genotyping-by-sequencing; Elshire et al. 2011) libraries for sequencing. Sample information can be found in the supplementary materials of our manuscript. We have also included an example bioinformatic script for data processing along with the initial VCF file of SNPs prior to any filtering. &lt;/p&gt;
description: <b>Dryad version number:</b> 5
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> https://datadryad.org/stash/share/R7KeyZqj5MUhHxmPOkY2SOf-WToboJlf9bP58487gs4
<b>Storage size:</b> 6509283072
<b>Visibility:</b> public
DOI: 10.5683/sp3/fz7cti
title: Canadian Association of Research Libraries Statistics

description: Data submitted to the Canadian Association of Research Libraries (CARL) reporting on Mount Royal University Library's collections, services, and staff.
DOI: 10.5683/sp3/y9vmhc
title: Search for Mental Wellness and Burnout in Health Care Professionals including Health Educators and Students

description: The files in this dataset contain the full MEDLINE (Ovid) search strategies for Mental Wellness and Burnout in Health Care Professionals including Health Educators and students. Original search date: (2023-06-01)
description: Ovid MEDLINE: Epub Ahead of Print, In-Process & Other Non-Indexed Citations, Ovid MEDLINE® Daily and Ovid MEDLINE® &lt;1946-Present&gt;

1 occupational stress/ or burnout, professional/ 20252
2 Resilience, Psychological/ 8435
3 (wellness or wellbeing or well being).tw,kf. 157366
4 (burnout or burn* out).tw,kf. 22542
5 ((emotion* or mental* or psychological*) adj2 (stress* or exhaust* or distress* or health)).tw,kf. 302918
6 ((mental* or psycholog* or emotion*) adj2 resilien*).tw,kf. 3264
7 fatigue/ or mental fatigue/ or alert fatigue, health personnel/ or compassion fatigue/ 37973
8 sleep deprivation/ or sleep hygiene/ or sleep quality/ 13250
9 sleep wake disorders/ or dyssomnias/ or sleep deprivation/ or exp sleep disorders, circadian rhythm/ or exp sleep disorders, intrinsic/ or parasomnias/ or nocturnal myoclonus syndrome/ or nocturnal paroxysmal dystonia/ or exp rem sleep parasomnias/ or restless legs syndrome/ or exp sleep arousal disorders/ or sleep bruxism/ or sleep-wake transition disorders/ 110024
10 (fatigue* or lassitude or insomnia* or parasomnia* or dyssomnia* or (sleep adj3 (disorder* or disturb* or quality or disrupt* or deprivation* or syndrome*))).tw,kf. 235386
11 1 or 2 or 3 or 4 or 5 or 6 or 7 or 8 or 9 or 10 719241
12 faculty, medical/ or health educators/ or exp medical staff/ or occupational therapists/ or physical therapists/ or exp physicians/ 220700
13 clinical clerkship/ or education, medical, graduate/ or "internship and residency"/ or exp education, medical/ 188597
14 students, medical/ 43926
15 ((medic* or orthop* or psychiatr* or occupational therap* or physiotherap* or physical therap* or clinical or surg* or radiolog* or obstetric* or gyn?ecolog* or An?esthesi* or Dermatolog* or Oncolog* or Rheumatolog* or Neurolog* or Patholog* or P?ediatric* or Cardiolog* or Urolog*) adj2 (student* or graduate* or undergraduate* or clerk* or fellow* or internship* or residen* or educat* or train* or novice* or tutor* or facult* or professor* or instructor*)).tw,kf. 241075
16 health educator*.tw,kf. 2608
17 (occupational therap* or physical therap* or physiotherap*).tw,kf. 79740
18 (physician* or an?esthesiologist* or cardiologist* or dermatologist* or endocrinologist* or gastroenterologist* or general practitioner* or geriatrician* or gyn?ecologist* or hospitalist* or nephrologist* or neurologist* obstetrician* or oncologist* or ophthalmologist* or otolaryngologist* or pathologist* or p?ediatrician* or neonatologist* or physiatrist* or pulmonologist* or radiologist* or rheumatologist* or surgeon* or neurosurgeon* or urologist*).tw,kf. 1000858
19 12 or 13 or 14 or 15 or 16 or 17 or 18 1394957
20 11 and 19 57341
21 limit 20 to (english language and yr="2017 -Current") 27842
DOI: 10.5683/sp3/gimspb
title: Enquête sociale générale - La sécurité des Canadiens (Victimisation) (ESG) 2019 (Cycle 34): Fichier incident
title: General Social Survey - Canadians Safety (Victimization) (GSS) 2019 (Cycle 34): Incident File
title: ESG Cycle 34

description: &lt;p&gt;Le fichier de microdonnées à grande diffusion (FMGD) de l’Enquête sociale générale – Sécurité des Canadiens vise à mieux comprendre comment les Canadiens perçoivent la criminalité et le système de justice ainsi qu’à recueillir des renseignements sur leurs expériences de victimisation.&lt;/p&gt;
&lt;p&gt;Cette enquête est la seule enquête nationale sur la victimisation autodéclarée à être menée dans toutes les provinces et tous les territoires. L’enquête permet d’estimer le nombre et les caractéristiques des victimes et des affaires criminelles.&lt;/p&gt;
&lt;p&gt;Les sujets abordés sont les suivants : la sécurité dans le quartier, la prévention de la criminalité, les risques et les perceptions, la violence infligée par le conjoint ou le partenaire actuel, les affaires criminelles, le harcèlement criminel, la confiance en la police, les crimes haineux, la cyberintimidation, les expériences de discrimination, la santé et le bien-être ainsi qu’une variété de mesures sociodémographiques.&lt;/p&gt;
description: Enquête sociale générale
description: Les changements apportés à l'Enquête sociale générale de 2019 - La sécurité des Canadiens sont disponibles dans Résumé des changements.
DOI: 10.5683/sp3/g8vflz
title: National Graduates Survey, 2018 [Canada]: Class of 2015
title: Enquête nationale auprès des diplômés, 2018 [Canada]: promotion de 2015
title: NGS 2018

description: Data from this survey will be used to better understand the experiences and outcomes of graduates, and to improve government programs. The survey is designed to collect details on topics such as: i) the extent to which graduates of postsecondary programs have been successful in obtaining employment since graduation; ii) the relationship between the graduates' program of study and the employment subsequently obtained; iii) the type of employment obtained and qualification requirements; iv) sources of funding for postsecondary education; and v) government-sponsored student loans and other sources of student debt. &lt;BR&gt; &lt;BR&gt; This information will be used by Statistics Canada, Employment and Social Development Canada (ESDC), provincial and territorial ministries of education, researchers and other interested organizations to examine various aspects such as educational pathways, postsecondary funding, mobility, school-to-work transitions, labour market outcomes and pursuit of further postsecondary studies.
description: National Graduates Survey
description: Changes to the 2018 National Graduates Survey are available at Summary of Changes.
DOI: 10.5683/sp3/ketm5z
title: Data for "Measurement Report: Observations of Ground-Level Ozone Concentration Gradients Perpendicular to the Lake Ontario Shoreline"

description: Full datasets for all ozone measurements undertaken during campaign.
DOI: 10.5683/sp3/tgzrdq
title: One Big Store
title: Source Diversity and Value capture of Digital Games in National App Store Instances

description: This data set is from the One Big Store research project conducted by the App Studies Initiative researchers at the University of Toronto and Manchester Metropolitan University. Have the uneven global flows of capital in the cultural industries changed because of access to distribution platforms like the Apple iOS App Store? Based on a financial analysis of this data set containing three years of game app revenues (2015-2017), our research project asks two questions. First, were game developers and publishers able to generate revenue in their domestic markets in the App Store? Second, to what extent are game app developers from the Global South, historically at the periphery of the global game industry, able to capture value in the US, Canadian, and Dutch instances of the App Store? Our research project advances discussions on the political economy of platform-dependent cultural production by situating this case within broader conversations on cultural imperialism, demonstrating that local app store instances are part of “one big store;” a US-dominated and oriented space of distribution and consumption that effectively captures revenue in regional marketplaces.
(2023-10-06)
DOI: 10.5683/sp3/8npbb9
title: Kootenai Brown Cabin -- Pincher Creek -- Laser Scanning -- 2023

description: This dataset contains sixteen (16) scans of the Kootenai Brown Cabin, located at the Kootenai Brown Pioneer Village, Pincher Creek, collected by the Capture2Preserv team on July 26th 2023. The data was collected with the Z+F 5010X and all data was registered in Z+F Laser Control. The scans were exported and converted in to .las format in CloudCompare.
description: Z+F Laser Control, 9.2
description: CloudCompare, 2.9.1
description: Published under the Creatives Common License CC BY-NC 4.0.
DOI: 10.5683/sp3/fcvw1w
title: Replication Data for: Influence of mountain pine beetle outbreaks on large fires in British Columbia

description: Data deposited to support the forthcoming publication, "Influence of mountain pine beetle outbreaks on large fires in British Columbia"
DOI: 10.5683/sp3/epsy8u
title: Tip 1 Exercise Data and Solution

description: Original dataset for the exercise in Tip 1.
DOI: 10.5683/sp3/cjjvfk
title: Tip 2 Exercise Data and Solution

description: Data for the exercise in Tip 2.
DOI: 10.5683/sp3/kpulrh
title: Tip 3 Exercise Data and Solution

description: Data for the exercise in tip 3.
DOI: 10.5683/sp3/tpiidw
title: Tip 4 Exercise Data and Solution

description: Data for the exercise in tip 4.
DOI: 10.5683/sp3/fdjwts
title: Tip 6 Exercise Data and Solution

description: Data for the exercise in tip 6.
DOI: 10.5683/sp3/ag9i0e
title: Tip 8 Exercise Data and Solution

description: Data for the exercise in tip 8.
DOI: 10.5683/sp3/oezya2
title: Tip 9 Exercise Data and Solution

description: Data for the exercise in tip 9.
DOI: 10.5683/sp3/zjdjwc
title: Kootenai Brown Cabin -- Pincher Creek -- Laser Scanning -- Metadata -- 2023

description: This dataset is the metadata for sixteen (16) scans of the Kootenai Brown Cabin, located at the Kootenai Brown Pioneer Village, Pincher Creek, collected by the Capture2Preserv team on July 26th 2023. The data was collected with the Z+F 5010X and all data was registered in Z+F Laser Control. The scans were exported and converted in to .las format in CloudCompare.
description: Published under the Creatives Common License CC BY-NC 4.0.
DOI: 10.5683/sp3/u40qjb
title: Replication Data for: The Price of Capital Goods, Investment, and Labor: Micro-Evidence from a Trade Liberalization

description: The data and programs replicate tables and figures from "The Price of Capital Goods, Investment, and Labor: Micro-Evidence from a Trade Liberalization", by Melshchuk and Timmer. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/ghd3he
title: Speech and voice production in healthy older adults with or without amateur singing experience

description: The aim of the study was to examine different components of speech production in younger and older adults with or without amateur singing experience using a battery of tests that included a voice production tasks, a standardized passage reading and a maximal performance task (diadochokinetic rates task [DDK]). Data were collected on 38 healthy amateur singers (aged 20–87 years, 23 females) and 40 healthy non-musician controls (aged 23–88 years, 19 females). This dataset contains the aggregated datasets that were used for group-level statistical analysis.
DOI: 10.5683/sp3/zqrujc
title: Verified Incident: Alleged Forced Registration of Voters in Muyuka (February 2020)

description: TO DOWNLOAD: Click on ‘Access Dataset’ and then click on ‘Download’ from the drop-down menu OR to the right of the pdf icon below, click the down-arrow and then click on ‘Download’ from the drop-down menu. 

TO READ ONLINE: Click on the file name below.
DOI: 10.5683/sp3/ors5bq
title: Verified Incident: Burning of Ikata Village (April 2020)

description: TO DOWNLOAD: Click on ‘Access Dataset’ and then click on ‘Download’ from the drop-down menu OR to the right of the pdf icon below, click the down-arrow and then click on ‘Download’ from the drop-down menu. TO READ ONLINE: Click on the file name below.
DOI: 10.5683/sp3/tzflbx
title: Verified Incident: Burnings and Killings in Ikata Village (February 2020)

description: TO DOWNLOAD: Click on ‘Access Dataset’ and then click on ‘Download’ from the drop-down menu OR to the right of the pdf icon below, click the down-arrow and then click on ‘Download’ from the drop-down menu. 

TO READ ONLINE: Click on the file name below.
DOI: 10.5683/sp3/htk1e5
title: Verified Incident: Beheading of Comfort Tumassang, Followed by Mass Arrest (August 2020)

description: TO DOWNLOAD: Click on ‘Access Dataset’ and then click on ‘Download’ from the drop-down menu OR to the right of the pdf icon below, click the down-arrow and then click on ‘Download’ from the drop-down menu. TO READ ONLINE: Click on the file name below.
DOI: 10.5683/sp3/dxd2o6
title: Herd-level prevalence and risk factors associated with respiratory and entero-pathogens from dairy calves in Ontario: A cross-sectional study

description: Supplemental files for 'Herd-level prevalence and risk factors associated with respiratory and entero-pathogens from dairy calves in Ontario: A cross-sectional study'.
DOI: 10.5683/sp3/xomxvc
title: Replication Data for: Unemployment Volatility in a Generalised Staggered Nash Wage Bargaining Framework

description: The data and programs replicate tables and figures from "Unemployment Volatility in a Generalised Staggered Nash Wage Bargaining Framework", by Kara. Please see the ReadMe file for additional details. The code includes the necessary scripts to reproduce the model simulation results presented in the paper. The folder also contains a ReadMe.pdf document that describes the code.
DOI: 10.5683/sp3/7bdpde
title: The Effect of Trunk Position and Pain Location on Lumbar Extensor Muscle Recruitment Strategies

description: Healthy participants performed isometric contractions in three positions: neutral, 45° trunk flexion, and 90° trunk flexion; under three conditions: no pain (NP), caudal pain (CrP), and cranial pain (CaP). During each contraction, myoelectric activity of the right and left lumbar extensor muscle was recorded with two HDsEMG of 64 electrodes arranged in 8 columns and 8 rows spaced by 10 mm (semidisposable adhesive matrix; model ELSCH064, OTBioelettronica, Torino, Italy). Furthermore, the force signal generated during the isometric contractions was recorded using the load cell.
Dependent variables were calculated for each pain condition (No pain, CrP, CaP) and for each position (neutral, 45° trunk flexion, 90° trunk flexion). Specifically, pain intensity, HDsEMG variables and force were analyzed. With regards to the HDsEMG dependent variable, the ‘Muscle activity amplitude’ corresponded to the mean of the root mean square (RMS) across all filtered channels. This amplitude was subsequently normalized using the mean MVIC amplitude calculated over a 1-second epoch in the corresponding position for each task. In addition, as a complementary analysis to further investigate the effect of trunk position on LEM activation strategies, the muscle activity amplitude normalized to the force produced was computed. 
To determine the spatial distribution of muscle activity of LEM, the medio-lateral (x) and cranio-caudal (y) coordinates of the centroid were calculated. To facilitate in the interpretation of the spatial coordinates, the right array was flipped along the x-axis, so higher x coordinates indicate a more medial location of the centroid on both sides. The centroid represents the average position of the channels that had absolute RMS values greater than 70% of the maximum absolute RMS value across all channels during the contractions. Specifically, channels with values exceeding 70% of the maximum RMS value were selected, and their estimates were averaged to generate a single estimate for each side, encompassing both x- and y-axis coordinates. For the force generation variables, ‘Force production' corresponds to the mean force exerted in Newton while ‘Force steadiness’ is determined by the CoV of force.
As a complementary analysis, the variability in individual pain responses under both CrP and CaP conditions was illustrated by comparing them to the baseline score (no pain condition) for metrics such as muscle activity amplitude, centroid coordinates, and CoV, for each participant. Variability in muscle activity amplitude was determined by calculating the difference between each pain condition and the baseline, and then multiplying it by 100 to represent a percentage of change. For the centroid coordinates and force steadiness, only the differences between each pain conditions and baseline are presented.
description: Matlab, v.2022b; TheMathWorks, Natick, MA
DOI: 10.5683/sp3/wszbas
title: Replication Data for: Maternal fed flaxseed diets influence offspring brain size and omega-3 fatty acid composition in chickens

description: The objective of this study was to investigate the effects of feeding Ross 708 broiler breeder hens and ISA Brown and Shaver White layer breeder hens a diet supplemented with n-3 FA on their offspring's brain size and brain FA composition.
DOI: 10.5683/sp3/adanor
title: Foot biomechanics during outdoor walking on varied terrain

description: These data were collected from ten healthy adults who walked on flat ground, slopes, and stairs while wearing two wearable sensors in their shoes.
DOI: 10.5683/sp3/hwxpv3
title: PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification

description: Characterizing microbial communities at high-resolution is crucial to unravel the complexity and functional diversity of microbial ecosystems, providing valuable insights into human health and ecology. Over the last decades, advances in bulk sequencing assays, such as 16S rRNA and shotgun sequencing, have enabled unparalleled qualitative and quantitative investigations of microbial communities. However, these methods generally do not provide resolution beyond the genus- or species-level, only measure relative abundance, and do not account for spatial organization, overlooking intricate details and functional insights on the real gut microbial heterogeneity. PUPpy (Phylogenetically Unique Primers in python) is a fully automated pipeline to design taxon-specific primers for any defined bacterial community. PUPpy-designed primers can be used to detect individual microbes and quantify absolute microbial abundance, providing more resolved and accurate quantification in gnotobiotic communities than 16S and shotgun sequencing.
description: Python, 3.10.6
description: MMseqs2, V14.7e284
description: pandas, 1.5
description: biopython, 1.80
description: dask, 0.15.2
description: seaborn, 0.13.0
description: matplotlib, 3.8.2
description: R, 4.1.2
description: r-tidyverse, 1.3.1
description: Guppy, 4.5.3
description: Bonito, 3.1
description: Flye, 2.7
description: Racon, 1.4.22
description: Medaka, 1.4.3
description: colorama, 0.4.1
description: primer3-py, 0.6.1
description: ggplot2, 3.3.5
description: tidyverse, 1.3.1
description: FastQC, 0.11.9
description: MultiQC, 1.10.1
description: fastp, 0.23.2
description: Bowtie2, 2.4.2
description: CoverM, 0.6.1
description: Kraken2, 2.1.2
description: InSilicoSeq, 1.5.4
description: QIIME2, 2023.2
description: DADA2, 1.20
description: SILVA database, 138.1
description: QX Manager 2, 2.0
description: pyani, 0.2.9
description: checkM, 1.0.18
description: Prokka, 1.14.5
DOI: 10.5683/sp3/21tpse
title: Calculation files for paper "Ab initio study of the processes of nitrogen functionalisation in graphene"

description: This archive contains all calculation files, both inputs and outputs, generated for and from the Ab Initio electronic structure code BigDFT, that were used for the numerical results presented in the paper "Ab initio study of the processes of nitrogen functionalisation in graphene".

Cette archive contient tous les fichiers de calculs, autant les fichiers d'entrée que les fichiers de sortie, qui ont servi à créer les résultats numériques présentés dans l'article "Ab initio study of the processes of nitrogen functionalisation in graphene". Ces fichiers ont été écrits pour ou générés par le code de structure électronique Ab Initio BigDFT.
DOI: 10.5683/sp3/qwghel
title: Mineralogy of the Soft-Shell Clam (Mya arenaria) from Port Joli, Nova Scotia

description: Transmission and Attenuated Total Reflectance Fourier Transform infrared spectroscopy data on samples of the marine soft-shell clam Mya arenaria from archaeological shell midden sites (AlDf-24 area A and C) in Port Joli Harbour, Nova Scotia
description: OPUS, 8
description: All files are tab-delimited. The first column of each file is the wavenumber in cm^-1, and the second column is the absorbance intensity.
DOI: 10.5683/sp3/k1ztzo
title: Replication Data for: Transferability of a Mask R-CNN model for the delineation and classification of two species of regenerating tree crowns to untrained sites

description: This dataset contains image and label pairs used to train a Mask R-CNN model to delineate and classify individual regenerating tree crowns as well as code to replicate experiments from the associated publication, titled "Transferability of a Mask R-CNN model for the delineation and classification of two species of regenerating tree crowns to untrained sites".