cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11181461
title: An open access dataset of reported Dengue outbreaks in Italy

description: Italian Dengue data

Sito dell'Istituto Superiore di Sanità - Sistema nazionale di sorveglianza delle arbovirosi: i bollettini periodici

Arboviral diseases are caused by viral agents carried by arthropod insects, such as mosquitoes, ticks and phlebotomas, through their bite or sting. Currently, more than 100 viruses associated with arboviruses have been identified that are capable of causing disorders in human health. The majority of these viruses belong to families and groups such as the Togaviridae (Alphavirus), the Flaviridae (Flavivirus) and the Bunyaviridae (Bunyavirus and Phlebovirus). In Italy, arboviral infections may arise from both imported and autochthonous cases and may present with diverse clinical symptoms. Surveillance of arboviruses is coordinated by the Istituto Superiore di Sanità (ISS) and, in the case of West Nile and Usutu virus surveillance, by the Istituto Zooprofilattico dell'Abruzzo e del Molise (Izs-AM), in collaboration with the Ministry of Health, which periodically publishes Surveillance and Response Plans to ensure early detection of cases and to reduce any spread as far as possible. Epidemiological surveillance is regulated by the "National Plan for Prevention, Surveillance and Response to Arboviruses (PNA) 2020-2025".

In order to inform citizens and make the collected data available, which is only useful for communication and information purposes, the following information is made available under the CC-BY-4.0 licence

- National evolution data- Regional data- Summary bulletins

Repository structure```dengue/│├── */│   ├── bulletins/│   │   ├── Dengue_*.pdf│   │   ├── ...│   ├── surveillance/│   │   ├── 2023/│   │   │   ├── dengue-ita-*.csv│   │   │   ├── dengue-ita-age-*.csv│   │   │   ├── dengue-ita-location-exposure-*.csv│   │   │   ├── dengue-ita-regions-*.csv│   │   ├── ...│   │   │   ├── ...│   ├── dengue-ita-summary-cases.csv│   ├── dengue-ita-summary-cases-regions.csv

```

Data structure

- Evoulution data about Dengue Italy (IT)

Example of data use

Direct download (CSV): https://raw.githubusercontent.com/fbranda/dengue/main/surveillance/dengue-ita-2023.csv

Python (requires `pandas`):```pythonimport pandas as pddf = pd.read_csv("https://raw.githubusercontent.com/fbranda/dengue/main/surveillance/dengue-ita-2023.csv")```

R (requires `httr`):```rlibrary(httr)df <- read.csv(text=content(GET("https://raw.githubusercontent.com/fbranda/dengue/main/surveillance/dengue-ita-2023.csv")))```
DOI: 10.6084/m9.figshare.26841535
title: <b>HCCP_2ndWave_3rd(2022)_Data.csv</b>

description: the Human Capital Corporate Panel (HCCP) survey conducted by the Korea Research Institute for Vocational Education and Training (KRIVET), 2nd wave, 3rd year(2022) data.
DOI: 10.15468/dl.jvd842
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Megalepthyphantes collinus (L.Koch, 1872)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 49 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103618-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9xvcg
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Switzerland",
 "Geometry POLYGON((-10.14723 39.74421,26.14723 39.74421,26.14723 54.25579,-10.14723 54.25579,-10.14723 39.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sarcoptiformes"
 ]
}

 The dataset includes 339 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103619-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgz3tg
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salminus brasiliensis (Cuvier, 1816)",
 "Country is Brazil",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 297 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103620-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.11684145.v3
title: Polymorphisms in dipeptidyl peptidase 4 reduce host cell entry of Middle East respiratory syndrome coronavirus

description: Middle East respiratory syndrome (MERS) coronavirus (MERS-CoV) causes a severe respiratory disease in humans. The MERS-CoV spike (S) glycoprotein mediates viral entry into target cells. For this, MERS-CoV S engages the host cell protein dipeptidyl peptidase 4 (DPP4, CD26) and the interface between MERS-CoV S and DPP4 has been resolved on the atomic level. Here, we asked whether naturally-occurring polymorphisms in DPP4, that alter amino acid residues required for MERS-CoV S binding, influence cellular entry of MERS-CoV. By screening of public databases, we identified fourteen such polymorphisms. Introduction of the respective mutations into DPP4 revealed that all except one (Δ346-348) were compatible with robust DPP4 expression. Four polymorphisms (K267E, K267N, A291P and Δ346-348) strongly reduced binding of MERS-CoV S to DPP4 and S protein-driven host cell entry, as determined using soluble S protein and S protein bearing rhabdoviral vectors, respectively. Two polymorphisms (K267E and A291P) were analyzed in the context of authentic MERS-CoV and were found to attenuate viral replication. Collectively, we identified naturally-occurring polymorphisms in DPP4 that negatively impact cellular entry of MERS-CoV and might thus modulate MERS development in infected patients.
DOI: 10.6084/m9.figshare.11686608
title: MOESM6 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 6: Table S1. TCGA Data Summary and Cancer Acronyms.
DOI: 10.6084/m9.figshare.11686608.v1
title: MOESM6 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 6: Table S1. TCGA Data Summary and Cancer Acronyms.
DOI: 10.6084/m9.figshare.7489928.v1
title: Additional file 12: of Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development

description: Table S8. Paralogs of PPR genes that are located on different chromosomes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.11686611
title: MOESM3 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 3 Table S2. Swiss-Prot annotation of linearly related DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.11686611.v1
title: MOESM3 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 3 Table S2. Swiss-Prot annotation of linearly related DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.11686614
title: MOESM4 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 4 Table S3. Swiss-Prot annotation of pressure-sensitive DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.7489934.v1
title: Additional file 14: of Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development

description: Table S9. List of PPR genes associated with qualitative variation in different genetic backgrounds. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.11686617
title: MOESM7 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 7: Table S2. BIRC5 Determines Sensitivity to IAP inhibition.
DOI: 10.6084/m9.figshare.11686617.v1
title: MOESM7 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 7: Table S2. BIRC5 Determines Sensitivity to IAP inhibition.
DOI: 10.6084/m9.figshare.11686620
title: MOESM5 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 5 Table S4. Swiss-Prot annotation of high-pressure-induced DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.11686620.v1
title: MOESM5 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 5 Table S4. Swiss-Prot annotation of high-pressure-induced DEGs. DEGs: differentially expressed genes.
DOI: 10.5281/zenodo.10245829
title: Binary Field of Research Classification Data

description: The zip file includes the following data:



Class category list (for categorical baseline),

Document text: containing the title + abstract of each dataset instance.

Class ORKG texts only: containing the dataset's ORKG label for each instance.

Class DBpedia texts only: containing texts extracted from the linked DBpedia entity for each instance (the text is derived from rdfs:label + rdfs:comment)

Class KGEs: containing DBpedia entity embeddings for each instance. The embeddings are pre-trained and extracted from https://zenodo.org/records/6384728.

Author embedding per instance.

Publisher embedding per instance. 

Labels: containing binary labels indicating whether an instance is a positive or negative sample.
DOI: 10.5281/zenodo.10245830
title: Binary Field of Research Classification Data

description: The zip file includes the following data:



Class category list (for categorical baseline),

Document text: containing the title + abstract of each dataset instance.

Class ORKG texts only: containing the dataset's ORKG label for each instance.

Class DBpedia texts only: containing texts extracted from the linked DBpedia entity for each instance (the text is derived from rdfs:label + rdfs:comment)

Class KGEs: containing DBpedia entity embeddings for each instance. The embeddings are pre-trained and extracted from https://zenodo.org/records/6384728.

Author embedding per instance.

Publisher embedding per instance. 

Labels: containing binary labels indicating whether an instance is a positive or negative sample.
DOI: 10.6084/m9.figshare.11686623
title: MOESM8 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 8: Table S3. Apoptosis pathway genes.
DOI: 10.6084/m9.figshare.11686623.v1
title: MOESM8 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 8: Table S3. Apoptosis pathway genes.
DOI: 10.6084/m9.figshare.11686626
title: MOESM6 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 6 Table S5. DEGs involved in the pathway clathrin-dependent endocytosis. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.11686626.v1
title: MOESM6 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 6 Table S5. DEGs involved in the pathway clathrin-dependent endocytosis. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.19619097
title: Additional file 2 of Gene expression profiles provide insights into the survival strategies in deep-sea mussel (Bathymodiolus platifrons) of different developmental stages

description: Additional file 2: Table S1. Pairwise sequence identity and genetic distance of the concatenated dataset (atp6 + COI) between individuals used in the study and other B. spp. Table S2. Summary of transcriptome data before and after quality control. Table S3. Mapping rates. Table S4. Summary of unigenes and transcripts. Table S5. DEGs in the inter-individual comparision groups with the highest fold changes. Table S6. Annotations from each database. Table S7. Expression level matrix of genes in the line charts of Fig. 4. Table S8. Unigenes related to stress response expressed predominantly in the gills. Table S9. Primers of the candidate genes used in qRT-PCR validation.
DOI: 10.6084/m9.figshare.7489934
title: Additional file 14: of Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development

description: Table S9. List of PPR genes associated with qualitative variation in different genetic backgrounds. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.7489961.v1
title: Additional file 5: of Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development

description: Table S4. PPR genes from the B73 genome with multiple copies in the PH207 genome. (XLSX 84 kb)
DOI: 10.6084/m9.figshare.11686629
title: MOESM9 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 9: Table S4. Sample size for TCGA tumor vs adjacent normal comparisons.
DOI: 10.6084/m9.figshare.11686629.v1
title: MOESM9 of Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer

description: Additional file 9: Table S4. Sample size for TCGA tumor vs adjacent normal comparisons.
DOI: 10.6084/m9.figshare.11686632
title: MOESM7 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 7 Table S6. Gene family analysis results of linearly related DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.11686635
title: MOESM8 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 8 Table S7. Gene family analysis results of pressure-sensitive DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.11686635.v1
title: MOESM8 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 8 Table S7. Gene family analysis results of pressure-sensitive DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.14305902
title: Influence of different Processing Parameter on distortion and Residual Stress of Inconel 718 Alloys Fabricated by Selective Laser Melting (SLM)

description: Anstract Selective Laser Melting (SLM) is one of additive manufacturing techniques which enable to build a complex structure model layer by layer with 3D CAD software. However, a higher research cost makes it hardly carry out by a traditional methodology, the best way to solve the problem is using simulation software. This paper aims to find an optimal processing parameters combination for a specimen with the smallest distortion and lowest residual stress through Simufact Additive (SA) software. Simulation results under an optimal processing parameters, which led to a smallest value of distortion and residual stress, was the combination of scan power with 300W, scan speed with 1.3m/s, scan interval with one spot diameter (0.12mm) and heat treatment holding time with 4h. In addition, the calculation results provide a novel study method to verify the influence of different processing parameters on Inconel 718 alloys fabricated by SLM.
DOI: 10.6084/m9.figshare.7489940.v1
title: Additional file 16: of Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development

description: Table S10. FPKM statistics for PPR genes in developing kernels. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7490201
title: Additional file 1: of Genomic alterations in gastric cancers discovered via whole-exome sequencing

description: Table S1. The complete list of all data with detailed information. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7490207
title: Additional file 2: of Genomic alterations in gastric cancers discovered via whole-exome sequencing

description: Table S2. Summary of all SNVs in primary tumor and metastasis tissues from 5 patients. (XLSX 307 kb)
DOI: 10.6084/m9.figshare.11686638
title: MOESM9 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 9 Table S8. Gene family analysis results of high-pressure-induced DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.23218610
title: Supplementary Material for: Sedation Prior to Intubation at Birth in Infants with Congenital Diaphragmatic Hernia: An International Survey on Current Practices

description: <b><i>Introduction:</i></b> Infants with congenital diaphragmatic hernia (CDH) are commonly intubated immediately after birth. Consensus on whether to provide sedation prior to intubation in the delivery room is lacking, although avoidance of stress is especially important in this population with high risk of pulmonary hypertension. We aimed at obtaining an overview of local pharmacological interventions and at providing guidance on delivery room management. <b><i>Methods:</i></b> An electronic survey was sent to international clinicians in referral centres for prenatal and postnatally diagnosed infants with CDH. This survey addressed demographic information, use of sedation and/or muscle relaxant prior to intubation, and use of pain scales in the delivery room. <b><i>Results:</i></b> We received 93 relevant responses from 59 centres. Most centres were from Europe (<i>n</i> = 33, 56%), followed by North America (<i>n</i> = 16, 27%), Asia (<i>n</i> = 6, 10%), Australia (<i>n</i> = 2, 3%), and South America (<i>n</i> = 2, 3%). A total of 19% (11/59) of the centres routinely provided sedation prior to intubation in the delivery room, with midazolam and fentanyl being most often used. Methods of administration varied for all medications provided. Only 5 of 11 centres using sedation reported an adequate sedative effect prior to intubation. Muscle relaxants prior to intubation were used in 12% (7/59) of the centres, although not always in combination with sedation. <b><i>Conclusion:</i></b> This international survey shows a substantial variation in sedation practices in the delivery room and scarce use of both sedative agents and muscle relaxants prior to intubation of CDH infants. We provide guidance on developing protocols for pre-intubation medication in this population.
DOI: 10.6084/m9.figshare.11686638.v1
title: MOESM9 of Insights into high-pressure acclimation: comparative transcriptome analysis of sea cucumber Apostichopus japonicus at different hydrostatic pressure exposures

description: Additional file 9 Table S8. Gene family analysis results of high-pressure-induced DEGs. DEGs: differentially expressed genes.
DOI: 10.6084/m9.figshare.23218610.v1
title: Supplementary Material for: Sedation Prior to Intubation at Birth in Infants with Congenital Diaphragmatic Hernia: An International Survey on Current Practices

description: <b><i>Introduction:</i></b> Infants with congenital diaphragmatic hernia (CDH) are commonly intubated immediately after birth. Consensus on whether to provide sedation prior to intubation in the delivery room is lacking, although avoidance of stress is especially important in this population with high risk of pulmonary hypertension. We aimed at obtaining an overview of local pharmacological interventions and at providing guidance on delivery room management. <b><i>Methods:</i></b> An electronic survey was sent to international clinicians in referral centres for prenatal and postnatally diagnosed infants with CDH. This survey addressed demographic information, use of sedation and/or muscle relaxant prior to intubation, and use of pain scales in the delivery room. <b><i>Results:</i></b> We received 93 relevant responses from 59 centres. Most centres were from Europe (<i>n</i> = 33, 56%), followed by North America (<i>n</i> = 16, 27%), Asia (<i>n</i> = 6, 10%), Australia (<i>n</i> = 2, 3%), and South America (<i>n</i> = 2, 3%). A total of 19% (11/59) of the centres routinely provided sedation prior to intubation in the delivery room, with midazolam and fentanyl being most often used. Methods of administration varied for all medications provided. Only 5 of 11 centres using sedation reported an adequate sedative effect prior to intubation. Muscle relaxants prior to intubation were used in 12% (7/59) of the centres, although not always in combination with sedation. <b><i>Conclusion:</i></b> This international survey shows a substantial variation in sedation practices in the delivery room and scarce use of both sedative agents and muscle relaxants prior to intubation of CDH infants. We provide guidance on developing protocols for pre-intubation medication in this population.
DOI: 10.6084/m9.figshare.14305859.v1
title: Effects of Oxygen Flow Rates on the Physical Characteristics of Magnetron Sputtered Single-Phase Polycrystalline Cu2O Films

description: The single-phase polycrystalline copper oxide (Cu2O) films were prepared on sapphire substrates by radio frequency (RF) magnetron sputtering technology which was characterized by low cost and high efficiency. The influences of oxygen flow rate on physical characteristics of the prepared films were investigated. The XRD results showed that the single-phase Cu2O film exhibited a (110) preferred orientation through the analysis of texture coefficient. The AFM images exhibited that the prepared Cu2O film had the highest surface roughness with a distinctive quadrangular surface morphology. The optical transmittance of the single-phase Cu2O film was under 35% and the band gap energy was calculated to be 2.30 eV, the absorption spectra included the peak wavelength of solar radiation and the high absorptivity made it to be a suitable absorbing material. The Hall measurement indicated that all the samples exhibited p-type conductivity. The resistivity, mobility and carrier concentration of the single-phase Cu2O film was 4625 Ω·cm, 1.87 cm2/v·s and 7.227×1014 cm−3, respectively.
DOI: 10.6084/m9.figshare.20064943
title: Additional file 2 of Transcriptomic and proteomic analyses of Cucurbita ficifolia Bouché (Cucurbitaceae) response to Fusarium oxysporum f.sp. cucumerium

description: Additional file 2. DEGs in C. ficifolia leaf after infection by FOC at 4 dpi compared with control.