cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48569/pa-l000013
title: Human Genomic Data for Complex Traits.

description: These data comprise next-generation sequence data, including whole-genome sequence data, exome data, and other genomic data files. The files range in size from 10GB for whole exome data file to up to 200GB for a whole genome file. These data represent genetic data that are analysed by Centre for Genetic Origins of Health and Disease Staff for both national and international collaborators. The collection contains or will contain genetic information for several nationally and internationally recognized studies that are based in Western Australia, including Busselton Health Study, Western Australian Pregnancy Study (Raine), and Western Australia Family Study of Schizophrenia as well as several others. The major type of research that these genomic data support is health related and seeks to identify genes related to complex disease (heart disease, cancer, etc.) and their associated risk factors (blood pressure, lipids, etc.). The major national and international studies we are currently working with include the 1) Busselton Health Study to identify genes associated with heart disease, cancer, etc; 2) the Raine study to identify genes associated with the development of complex diseases in an adolescent population; 3) Western Australia Family Study of Schizophrenia to identify genes and associated risk factors with this psychiatric disorder; 4) a study of Australian families with preeclampsia; 5) The Strong Heart Family Study, a genetic study of American Indians in the United States; and 6) The San Antonio Family Study, a genetic study of Mexican Americans in the United States. We currently analyse raw genetic data on Epic, using makefiles to call a number of routines to align, calibrate, and call genetic variants using supercomputing technology. The current runtime using up to 90 processors concurrently on Epic is 3 to 6 hours for a whole exome sequence and 15- 18 hours for a whole genome sequence. We currently run these in batches of up to 50 samples for exome and 5 samples for whole genome sequences. Based on current and pending funding initiatives we anticipate analysing 200 exome samples and up to 200 whole genome samples within the next 12 months. The data form the basis for a number of future genetic studies and represent the raw data for the identification of genetic risk factors in complex disease..
DOI: 10.48569/pa-l000029
title: Mineral Resources EO Dataset

description: Earth observation datasets collected over Australia including satellite imagery, airborne hyperspectral, DEMS, spectroscopy data etc used for mineral exploration and remote sensing research and environmental monitoring. Mineral exploration research and environmental monitoring.
DOI: 10.48569/pa-l000028
title: GLEAM Data Archive

description: The GaLactic and Extragalactic All-sky MWA (GLEAM) survey has been one of the most profitable science outcomes from the instrument over the last few years. At least 15 refereed astronomy papers have made direct use of GLEAM data products made possible through the resources available at Pawsey. These resources include the long-term storage of calibrated visibility and image data for later use and are proving invaluable for the combination of the older MWA Phase 1 and the newer MWA Phase 2 data. The combination of both results in higher angular resolution and unprecedented sensitivity to extended structure.
DOI: 10.48569/pa-l000017
title: Data storage for high resolution regional climate simulations of current and future climate for Western Australia

description: The wheat-belt of southwest Western Australia contributes almost 50% of Australia’s total cereal crop production; the Margaret river region produces some of Australia’s finest red wines; and the northwest of Western Australia has significant agricultural potential. Additionally, the southwest of Western Australia is internationally recognized as a biodiversity hotspot; and is also one of the most fire-prone regions of Australia. All of this means that the state of Western Australia is highly susceptible to changes in climate. Low rainfall has significant impacts on wheat yields; our wines have very well-defined climatic tolerances; our native fauna and flora are impacted by climate extremes such as heat-waves. This project produces high resolution regional climate projections for the state of Western Australia, such that we can better manage risks caused by future climate change. The high volumes of data produced by our models require significant amounts of data storage, without which none of this critical research would be possible. This project has been directly and indirectly funded over many years via: Australian Research Council Discovery Early Career Researcher Award (DE170100102) WA State Centre for Excellence in Climate Change, Woodland and Forest Health Australian Grains Research and Development Grant (MCV00013) Australian Grains Research and Development Grains Industry Research Scholarships Australian Research Council Centre of Excellence for Climate System Science (CE110001028) National Science Foundation (Grant ATM 0523583) Australian Research Council’s Discovery funding scheme (Project DP0664515)
DOI: 10.48569/pa-l000051
title: MWA high frequency resolution trial observations of Galactic Centre

description: This dataset contains 10KHz frequency resolution observations of Galactic Centre done with MWA, plus reduced data products of this observations. This data is collected to study the potential of MWA for spectral line observations. 10 KHz resolution is not the main mode of MWA. At this stage the data set will be assessed for the quality and will serve as a testbed and reference. If the data quality is satisfactory, more observations will be planned. Separate application will be thought in such a case. High frequency resolution observations enable studying spectral line emission from galactic and extra galactic sources. Such emission may include various molecular and radio recombination lines. These spectra lines carry important information about physical conditions of the interstellar medium, and therefore allows us to understand better the evolution of stars and barionic matter in Universe.
DOI: 10.48569/pa-l000012
title: Marine data repository for WAMSI and other projects

description: Most of the data is WAMSI (Western Australian Marine Science Institution) funded which is State Government funded with in-kind contributions from major marine organisations such as CSIRO, AIMS, universities, State Government as well as private industry - https://www.wamsi.org.au/. Data includes video, photos, shapefiles, text, and other marine data types.
DOI: 10.48569/pa-l000038
title: AusSRC Image Storage

description: This projects aims to develop visualisation of large radio astronomy datasets from ASKAP and learn how to do it for the SKA. The work is supported by SKAO Australia, CSIRO, Pawsey and AusSRC.
DOI: 10.48569/pa-l000004
title: Seismic Broadband Data

description: This project aims to characterise the seismicity and nature of seismic noise of the South West of Perth Basin and Otway Basin, Victoria. Currently, a sparse seismic network of 14 stations has been operated across the region to monitor seismic wavefield continuously. The high fidelity data at each station is obtained from a combination of broadband seismic sensor and a geophone, which covers a large spectrum in the seismic band. In addition to the current data acquisition, a large N seismic array dataset from Otway Basin is going to be used in characterisation of the region. This dataset has been acquired with the funding from state and federal governments. We will use the continuous noise wavefield to increase the resolution.
DOI: 10.6084/m9.figshare.19743181
title: Rainfall data

description: Rainfall data used in the submitted manuscript.
DOI: 10.48493/tt5b-zs73
title: Schema 1 faunal distributions
DOI: 10.48569/pa-l000042
title: AB1 and Renca RNAseq

description: This project involves pre-processing and analysis of single cell and bulk RNA seq data from AB1 and Renca mouse models to gauge their response to immunotherapy. Multiple public repositories of human data will be used for validation. The initial phase of the project involves processing of approximately 70 -100 Bulk RNA seq samples from mouse models. There will be approximately 20 samples for single cell RNAseq for mouse data. It is planned that at &gt; 150 RNAseq fastQ files will be analysed from publicly availalble datasets, with more data expected to be made available in the next few years. Anaylsis will also incorporate protein specificity data and TF data.
DOI: 10.48569/pa-l000025
title: Pulsar Scintillometry

description: We are performing radio interferometric observations of pulsars with radio telescopes spread around the globe (Very Long Baseline Interferometry, VLBI). Typically, the data is correlated at a central correlation facility (such as JIVE in the Netherlands or the MPIfR in Germany) after which the raw data is being deleted. However, for our project we would like to keep the raw data for later re-correlation by ourselves. This might be necessary because of pulsar parameters being insufficiently accurate at first correlation leading to imperfect correlations. Also, the default correlator setups typically lack in spectral resolution compromising our scientific goals. The project itself aims at performing ultra-high angular resolution observations of pulsars by employing the turbulent interstellar medium as an interstellar interferometer. The phase information contained in VLBI observations allows us to construct an image of the structures scattering pulsar radiation which, in turn, can be used to resolve the pulsar emission region. Ultimately we will be able to constrain the emission hight and, hence, the emission mechanism giving rise to the pulsar phenomenon. This collection will mark the first of its kind for many similar observations to come. On the long term we plan to use this and subsequent similar observations to not only study the pulsars themselves but also the dynamics of the interstellar medium. Furthermore, this collection can serve as a blue-print for future similar projects.
DOI: 10.6084/m9.figshare.19743196
title: FAIR DATA EXPERIMENTAL DATASET

description: Dataset of 45 patients with their pathology
DOI: 10.6084/m9.figshare.19743196.v1
title: FAIR DATA EXPERIMENTAL DATASET

description: Dataset of 45 patients with their pathology
DOI: 10.5281/zenodo.6537542
title: Data: Thorax Vibration and Force Generation During Non-Flight Behaviors in Carpenter Bees (Xylocopa: Apidae): Implications for Floral Buzzing

description: Interval data from the manuscript "Thorax Vibration and Force Generation During Non-Flight Behaviors in Carpenter Bees (<em>Xylocopa</em>: Apidae): Implications for Floral Buzzing "
DOI: 10.5281/zenodo.5533015
title: Data: Thorax Vibration and Force Generation During Non-Flight Behaviors in Carpenter Bees (Xylocopa: Apidae): Implications for Floral Buzzing

description: Interval data from the manuscript "Thorax Vibration and Force Generation During Non-Flight Behaviors in Carpenter Bees (<em>Xylocopa</em>: Apidae): Implications for Floral Buzzing "
DOI: 10.5281/zenodo.5525348
title: Dataset and Code for "A case study of space-time performance comparison of wind turbines on a wind farm"

description: This is the computer code and partial dataset for producing the results in the paper, Ding, Kumar, Prakash, Kio, Liu, Liu, and Li, 2021, “A case study of space-time performance comparison of wind turbines on a wind farm,” <em>Renewable Energy</em>, Vol. 171, pp. 735-746 . [<strong>Note 1</strong>: In the Reproducibility Report, The table numbers are off by one, namely that Table 2 should be Table 3, and Table 3 should be Table 4.] [<strong>Note 2:</strong> The results in Table 4 included in the paper were produced by the DSWE version 1.3.4. Those results are still reproducible if using the same version of DSWE. Since then, DSWE went through some changes and updates. When using DSWE 1.5.1 version (the latest version as of May 10, 2022) and setting the optimization method to 'L-BFGS-B' (because version 1.3.4’s default optimization setting was 'L-BFGS-B'), the results corresponding to the second row in Table 4 are somewhat different. For the specific results using DSWE 1.5.1, please see the note section at the end of the updated Reproducibility Report.]
description: {"references": ["Ding, Kumar, Prakash, Kio, Liu, Liu, and Li, 2021, \"A case study of space-time performance comparison of wind turbines on a wind farm,\" Renewable Energy, Vol. 171, pp. 735-746 .", "https://arxiv.org/abs/2005.08652"]}
DOI: 10.5281/zenodo.5525347
title: Dataset and Code for "A case study of space-time performance comparison of wind turbines on a wind farm"

description: This is the computer code and partial dataset for producing the results in the paper, Ding, Kumar, Prakash, Kio, Liu, Liu, and Li, 2021, “A case study of space-time performance comparison of wind turbines on a wind farm,” <em>Renewable Energy</em>, Vol. 171, pp. 735-746 . [<strong>Note 1</strong>: In the Reproducibility Report, The table numbers are off by one, namely that Table 2 should be Table 3, and Table 3 should be Table 4.] [<strong>Note 2:</strong> The results in Table 4 included in the paper were produced by the DSWE version 1.3.4. Those results are still reproducible if using the same version of DSWE. Since then, DSWE went through some changes and updates. When using DSWE 1.5.1 version (the latest version as of May 10, 2022) and setting the optimization method to 'L-BFGS-B' (because version 1.3.4’s default optimization setting was 'L-BFGS-B'), the results corresponding to the second row in Table 4 are somewhat different. For the specific results using DSWE 1.5.1, please see the note section at the end of the updated Reproducibility Report.]
description: {"references": ["Ding, Kumar, Prakash, Kio, Liu, Liu, and Li, 2021, \"A case study of space-time performance comparison of wind turbines on a wind farm,\" Renewable Energy, Vol. 171, pp. 735-746 .", "https://arxiv.org/abs/2005.08652"]}
DOI: 10.6084/m9.figshare.19743184
title: 2Aligned.out_sorted.bw

description: dummy upload
DOI: 10.6084/m9.figshare.19743184.v1
title: 2Aligned.out_sorted.bw

description: dummy upload
DOI: 10.25442/hku.19596124
title: Supporting data for “Data-driven strategies for soft sensing, robot modelling and control”

description: Soft/continuum robots are developed with high dexterity, flexibility and adaptability, as inspired by biologies like octopus, elephant trunk and vines. This high compliance<br> endows them with the advantage of safe interaction with their surroundings or humans, which indicates a wide spectrum of applications. However, unlike conventional rigid-link robots with identified kinematics/dynamics, high flexibility also brings great challenges for their sensing, modelling and control. The infinite degree-of-freedoms (DoFs) and high non-linearity make it hard to find solutions with conventional analytical methods. In such situations, data-driven strategies using learning algorithms are a promising way out to solve these concerns for soft/continuum robots. <br>
DOI: 10.25442/hku.19596124.v1
title: Supporting data for “Data-driven strategies for soft sensing, robot modelling and control”

description: Soft/continuum robots are developed with high dexterity, flexibility and adaptability, as inspired by biologies like octopus, elephant trunk and vines. This high compliance<br> endows them with the advantage of safe interaction with their surroundings or humans, which indicates a wide spectrum of applications. However, unlike conventional rigid-link robots with identified kinematics/dynamics, high flexibility also brings great challenges for their sensing, modelling and control. The infinite degree-of-freedoms (DoFs) and high non-linearity make it hard to find solutions with conventional analytical methods. In such situations, data-driven strategies using learning algorithms are a promising way out to solve these concerns for soft/continuum robots. <br>
DOI: 10.25442/hku.19614297
title: Supporting data for Functional Analysis of the Wnt-Irx Regulatory Axis in the Chondrocyte-Osteoblast Lineage and Metabolic Homeostasis

description: The dataset includes pictures and data files for Mingpeng Kong's PhD thesis. My PhD thesis is a functional analysis of Wnt-Irx regulatory axis on osteoblast-chondrocyte lineage and whole-body metabolism homeostasis. Hypertrophic chondrocytes were recently found to be able to become osteoblasts, but the underlying mechanism is not fully revealed. My work demonstrated that Wnt-Irx regulatory axis can control the fate of hypertrophic chondrocyte descendants to become either osteoblasts or adipocytes. Altered bone-fat balance is associated with whole-body metabolism. Given that Wnt-Irx regulatory axis controls the differentiation towards bone/fat cells, we further examined and characterized the effect of Wnt-Irx regulatory axis by performing a wide range of metabolic tests. In conclusion, the my PhD thesis presents a comprehensive study on the role of Wnt-Irx regulatory axis in chondrocyte lineage and metabolism, which may have long-term implications of the understanding of skeletal and metabolic disorders.
DOI: 10.25442/hku.19614297.v1
title: Supporting data for Functional Analysis of the Wnt-Irx Regulatory Axis in the Chondrocyte-Osteoblast Lineage and Metabolic Homeostasis

description: The dataset includes pictures and data files for Mingpeng Kong's PhD thesis. My PhD thesis is a functional analysis of Wnt-Irx regulatory axis on osteoblast-chondrocyte lineage and whole-body metabolism homeostasis. Hypertrophic chondrocytes were recently found to be able to become osteoblasts, but the underlying mechanism is not fully revealed. My work demonstrated that Wnt-Irx regulatory axis can control the fate of hypertrophic chondrocyte descendants to become either osteoblasts or adipocytes. Altered bone-fat balance is associated with whole-body metabolism. Given that Wnt-Irx regulatory axis controls the differentiation towards bone/fat cells, we further examined and characterized the effect of Wnt-Irx regulatory axis by performing a wide range of metabolic tests. In conclusion, the my PhD thesis presents a comprehensive study on the role of Wnt-Irx regulatory axis in chondrocyte lineage and metabolism, which may have long-term implications of the understanding of skeletal and metabolic disorders.
DOI: 10.25442/hku.19635756
title: Supporting data for "Cone-Beam Computed Tomography Imaging Analysis of Anatomical Landmarks and Variations with Surgical Relevance in the Craniofacial Region"

description: This is the supporting Dataset and README.txt file for the thesis "Cone-Beam Computed Tomography Imaging Analysis of Anatomical Landmarks and Variations with Surgical Relevance in the Craniofacial Region". The folder comprises nine spreadsheets for the three main studies documented in the thesis. These studies were to evaluate the diagnostic accuracy of cone-beam computed tomography (CBCT) for the detection of accessory mental foramina, to investigate linear and angular measurements to enhance safety in Le Fort I osteotomy, and to investigate the anatomical variations of the ethmoid sinus. Each spreadsheet is anonymized to protect patients' confidentiality and contains variables relating to their demography as well as values for the imaging measurements performed on the CBCT scans. Also, the CBCT analysis in two of the three studies (for accessory mental foramina detection and ethmoid sinus variations) involved duplicate measurements or multiple observers which are identified in the names of the spreadsheet file. Observers are denoted as "Observer 1/2/3" while measurements were denoted as "1st/2nd/3rd".
DOI: 10.25442/hku.19635756.v1
title: Supporting data for "Cone-Beam Computed Tomography Imaging Analysis of Anatomical Landmarks and Variations with Surgical Relevance in the Craniofacial Region"

description: This is the supporting Dataset and README.txt file for the thesis "Cone-Beam Computed Tomography Imaging Analysis of Anatomical Landmarks and Variations with Surgical Relevance in the Craniofacial Region". The folder comprises nine spreadsheets for the three main studies documented in the thesis. These studies were to evaluate the diagnostic accuracy of cone-beam computed tomography (CBCT) for the detection of accessory mental foramina, to investigate linear and angular measurements to enhance safety in Le Fort I osteotomy, and to investigate the anatomical variations of the ethmoid sinus. Each spreadsheet is anonymized to protect patients' confidentiality and contains variables relating to their demography as well as values for the imaging measurements performed on the CBCT scans. Also, the CBCT analysis in two of the three studies (for accessory mental foramina detection and ethmoid sinus variations) involved duplicate measurements or multiple observers which are identified in the names of the spreadsheet file. Observers are denoted as "Observer 1/2/3" while measurements were denoted as "1st/2nd/3rd".
DOI: 10.25442/hku.19539061
title: Supporting data for “Monitoring and Regulation in Reading Comprehension among Chinese children: Exploring the Role of Comprehension Monitoring, Lexical Ambiguity Resolution and Reading Strategy"

description: Datasets for the thesis titled "Monitoring and Regulation in Reading Comprehension among Chinese children: Exploring the Role of Comprehension Monitoring, Lexical Ambiguity Resolution and Reading Strategy". The thesis contained three studies and aimed to provide a more comprehensive view on monitoring and regulation in reading and examine its contributions on reading comprehension. Dataset for Study 1 contained cross-sectional and longitudinal data from junior primary school children on their general cognitive abilities, reading comrpehesion performance and cognitive-linguistic skills. Dataset for Study 2 and 3 contained eye-movement data and data on general cognitive abilities and reading-related cogntive-linguistic skills of grade 3 children. <br> Please refer to the README file for details of the datasets.
DOI: 10.25442/hku.19539061.v1
title: Supporting data for “Monitoring and Regulation in Reading Comprehension among Chinese children: Exploring the Role of Comprehension Monitoring, Lexical Ambiguity Resolution and Reading Strategy"

description: Datasets for the thesis titled "Monitoring and Regulation in Reading Comprehension among Chinese children: Exploring the Role of Comprehension Monitoring, Lexical Ambiguity Resolution and Reading Strategy". The thesis contained three studies and aimed to provide a more comprehensive view on monitoring and regulation in reading and examine its contributions on reading comprehension. Dataset for Study 1 contained cross-sectional and longitudinal data from junior primary school children on their general cognitive abilities, reading comrpehesion performance and cognitive-linguistic skills. Dataset for Study 2 and 3 contained eye-movement data and data on general cognitive abilities and reading-related cogntive-linguistic skills of grade 3 children. <br> Please refer to the README file for details of the datasets.