cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/b9mmbfrcv6.1
title: Data for: Tracing the Sources and Formation Pathways of Atmospheric Particulate Nitrate over the Pacific Ocean Using Stable Isotopes
DOI: 10.17632/p896bncwbh.3
title: DATA STABILITY OF ATTACHMENT NARRATIVES

description: This data set provides the percentage of stable adjectives and stable autobiographical memories provided in Adult Attachment Interviews conducted seven years apart, together with attachment security assessed as AAI coherence and secure base script knowledge. Additionally, memory stability is examined according to different memory features such as valence and autobiographical memory specificity.
DOI: 10.17632/k659jr9gvv.1
title: Transcriptional dysregulation in postnatal glutamatergic progenitor contributes to closure of the cortical neurogenic period

description: Glutamatergic progenitors persist in the forebrain long after the period of corticogenesis. We performed fate-mapping of pre- and postnatal glutamatergic progenitors to investigate their lineage relationship and neuronal output. Our results show that postnatal glutamatergic progenitors do not accumulate during embryonic development, but are produced by embryonic radial glial cells that persist after birth in the dorsal subventricular zone. Whereas most undergo delayed cell death, some of these progenitors give rise to cortical neurons that express markers of late born neurons, but ectopically migrate to deep cortical layers where they survive for at least several weeks. Single cell RNA-sequencing reveal a downregulation of transcriptional programs, specifically those involved in metabolism, differentiation and migration, which parallels the gradual decline in cortical neurogenesis observed in vivo. Rescuing experiments show that postnatal progenitors remain permissive to genetic and pharmacological manipulation, suggesting that they could be recruited for regenerative purposes. Our study is the first to provide an in depth characterization of postnatal glutamatergic progenitors and identifies novel potential therapeutic targets for promoting brain repair
DOI: 10.17632/y7v9w4z7t2.1
title: Inner Filter Effect Dataset for : Impact study of the wastewater treatment plant effluents on fluorescence of coastal zone water using fluorescence EEM-PARAFAC.

description: This dataset is for the verification of the inexistence of the inner filter effect in the dataset for the article entitled "Impact study of the wastewater treatment plant effluents on fluorescence of coastal zone water using fluorescence EEM-PARAFAC."
DOI: 10.17632/zhw7j4ztnv.1
title: CGPI-OECD Suplementary Data

description: The sumplementary data contains all data analysed in the article "Are Economic Growth and Sustainable Development Converging? Evidence from the Comparable Genuine Progress Indicator for Organisation for Economic Co-operation and Development Countries" published in the International Journal of Energy Economics and Policy. The sumplementary data uses an interactive pivot chart where the reader can choose freely what to analyse. It is recommended for the reader to use this supplement for a better visualization and consequently comprehension of the results discussed in the article.
DOI: 10.18716/nmrshiftdb2/20236671
title: NMR data for Cantharidin
DOI: 10.18716/nmrshiftdb2/60004827/chiuz_cdcl3
title: ChiuZ NMR dataset for (–)-(8α ,9R)-6'-Methoxycinchonan-9-ol; 6'-Methoxycinchonidin; Quinine in Chloroform-D1 (CDCl3)
DOI: 10.5281/zenodo.2648783
title: Land use and land cover data for Northern Coast of São Paulo State (Brazil) from 1985 to  2015

description: Authors: Ana Beatriz Pierri Daunt and Thiago Sanna Freire Silva

Product: Land use and land cover maps for 1985, 1990, 1995, 2000, 2005, 2010, 2015 in raster format.

Study area: Northern Coast of São Paulo State (Brazil)

Mapping methods: Land use and land cover were mapped using Landsat images and geographic object-based image analysis (GEOBIA), based on the Random Forests supervised algorithm processing using the “RSGISlib” library, accessible through the Python language. More information at https://www.rsgislib.org. The automated classification was followed by manual correction of the land cover maps at the 1:25.000 scale. See Metadata.docx for more details and land use/cover description,

Financial informations: This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) - Finance Code 001, and by the National Council for Scientific and Technological Development (CNPq), fellowship #163870/2018-7, through the Geography Graduate Program, São Paulo State University. T.S.F. Silva acknowledges research productivity grant #310144/2015-9 from CNPq.
DOI: 10.17632/4yrp8nbm7c.1
title: OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers

description: Scalable and efficient numerical simulations continue to gain importance, as computation is firmly established as the third pillar of discovery, alongside theory and experiment. Meanwhile, the performance of computing hardware grows through increasingly heterogeneous parallelism, enabling simulations of ever more complex models. However, efficiently implementing scalable codes on heterogeneous, distributed hardware systems becomes the bottleneck. This bottleneck can be alleviated by intermediate software layers that provide higher-level abstractions closer to the problem domain, reducing development times and allowing computational scientists to focus. Here, we present OpenFPM, an open and scalable framework that provides an abstraction layer for numerical simulations using particles and/or meshes. OpenFPM provides transparent and scalable infrastructure for shared-memory and distributed-memory implementations of particles-only and hybrid particle-mesh simulations of both discrete and continuous models, as well as non-simulation codes. This infrastructure is complemented with frequently used numerical routines, as well as interfaces to third-party libraries. We present the architecture and design of OpenFPM, detail the underlying abstractions, and benchmark the framework in applications ranging from Smoothed-Particle Hydrodynamics (SPH) to Molecular Dynamics (MD), Discrete Element Methods (DEM), Vortex Methods, stencil codes (finite differences), and high-dimensional Monte Carlo sampling (CMA-ES), comparing it to the current state of the art and to existing software frameworks.
DOI: 10.17632/9yx8c5ztft.1
title: NMUPD among undergraduate students in southern Brazil

description: Cross-sectional survey conducted with a representative sample of undergraduate students of the Federal University of Rio Grande, Rio Grande, RS, Brazil
DOI: 10.17632/cj958d76pf.1
title: xSLHA: An Les Houches Accord reader for Python and Mathematica

description: The format defined by the SUSY Les Houches Accord (SLHA) is widely used in high energy physics to store and exchange information. It is no longer applied only to a few supersymmetric models, but the general structure is adapted to all kind of models. Therefore, it is helpful to have parsers at hand which can import files in the SLHA format into high-level languages as Python and Mathematica in order to further process the data. The focus of the xSLHA package, which exists now for Python and Mathematica, was on a fast read-in of large data samples. Moreover, also some blocks used by different tools, as HiggsBounds for instance, deviate from the standard conventions. These are also supported by xSLHA.
DOI: 10.17632/kybzy5d84t.1
title: A numerical routine for the crossed vertex diagram with a massive-particle loop

description: We present an evaluation of the two master integrals for the crossed vertex diagram with a closed loop of top quarks that allows for an easy numerical implementation. The differential equations obeyed by the master integrals are used to generate power series expansions centered around all the singular points. The different series are then matched numerically with high accuracy in intermediate points. The expansions allow a fast and precise numerical calculation of the two master integrals in all the regions of the phase space. A numerical routine that implements these expansions is presented.
DOI: 10.17632/r9y953dd26.1
title: 'Effects of spatial dimensionality and steric interactions on microtubule-motor self-organization' by Jamie Rickman, François Nédélec & Thomas Surrey

description: Simulation configuration files and documentation for the data presented in 'Effects of spatial dimensionality and steric interactions on microtubule-motor self-organization' by Jamie Rickman, François Nédélec & Thomas Surrey
DOI: 10.18716/nmrshiftdb2/60000002/chiuz_d2o
title: ChiuZ NMR dataset for 7-ß-D-Glucopyranosyl-9,10-dihydro-3,5,6,8-tetrahydroxy-1-methyl-9,10-dioxo-anthracen-2-carbonsure; carminic acid; Karmesinsure in Deuteriumoxide (D2O)
DOI: 10.5281/zenodo.2648782
title: Land use and land cover data for Northern Coast of São Paulo State (Brazil) from 1985 to  2015

description: Authors: Ana Beatriz Pierri Daunt and Thiago Sanna Freire Silva

Product: Land use and land cover maps for 1985, 1990, 1995, 2000, 2005, 2010, 2015 in raster format.

Study area: Northern Coast of São Paulo State (Brazil)

Mapping methods: Land use and land cover were mapped using Landsat images and geographic object-based image analysis (GEOBIA), based on the Random Forests supervised algorithm processing using the “RSGISlib” library, accessible through the Python language. More information at https://www.rsgislib.org. The automated classification was followed by manual correction of the land cover maps at the 1:25.000 scale. See Metadata.docx for more details and land use/cover description,

Financial informations: This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) - Finance Code 001, and by the National Council for Scientific and Technological Development (CNPq), fellowship #163870/2018-7, through the Geography Graduate Program, São Paulo State University. T.S.F. Silva acknowledges research productivity grant #310144/2015-9 from CNPq.
DOI: 10.17632/5kgz4bmt2h.1
title: Efficient hybrid algorithm for the dynamic creation of wormlike chains in solutions, brushes, melts and glasses

description: We present an updated version of a program that had been published earlier in this journal. The program executes an algorithm for the creation and relaxation of large, dense or diluted homogeneous many particle systems made of wormlike, finite extendable, semiflexible multibead chains and – optionally – solvent particles, which repulse each other. The key feature is its efficiency, its output has been proven to serve as an excellent basis for any subsequent off-lattice computer simulation. The application allows to choose (i) the bead number density or packing fraction, temperature, chain length, system size, concentration, (ii) the interaction potentials, hence the local features such as bond length and bending rigidity of the chains, and (iii) the degree of pre-relaxation, parametrized and expressed through a minimum intermolecular distance. The monodisperse polymers are represented by chains of monomer coordinates in 3D space. During the dynamical two-step process of sample creation the initially (Monte Carlo step 1) predicted global characteristics of the molecular conformations remain as unaffected as possible (during molecular dynamics step 2) and the potential energy and the entropy production are relaxing towards their minima. The potentials, the distribution of bond lengths, the integration time step and temperature are smoothly controlled during the creation/relaxation process until they finally approach their prescribed or physical values. The quality of the algorithm is by its nature independent of concentration, system size or degree of polymerization; the CPU speed is quite independent of the latter quantity and linear in the system size. Chains tethered to a surface (dry polymer brushes) can be generated as well. The previous version of this program (ADJU_v1_0) may be found at http://dx.doi.org/10.1016/S0010-4655(98)00160-X.
DOI: 10.17632/gtvbc8b7sw.1
title: Transport coefficients in the Fourier shape parametrization

description: An innovative parametrization of nuclear shapes, based on a Fourier expansion of the square distance from the surface of the nucleus to the symmetry axis is introduced. Surface, curvature and Coulomb energy coefficients of a charged liquid drop, that determine the semiclassical nuclear energy, are evaluated within this shape parametrization, together with the wall-friction and the irrotational-flow mass tensors. These transport coefficients are important ingredients of many nuclear models describing nuclear structure and dynamics. A numerical code allowing for the determination of all these quantities for a huge variety of nuclear shapes is made available to the interested user.
DOI: 10.17632/whk6wdy3nn.1
title: PNADIS: An automated Peierls–Nabarro analyzer for dislocation core structure and slip resistance

description: Dislocation is one of the most critical and fundamental crystal defects that dominate the mechanical behavior of crystalline solids, however, a quantitative determination of its character and property in experiments is quite challenging and limited so far. In this paper, a fully automated Peierls-Nabarro (P-N) analyzer named PNADIS is presented; a complete set of the character and property of dislocation can be automatically derived, including the dislocation core structure, Peierls energy and stress, pressure field around dislocation core, solute/dislocation interaction energy, as well as the energy barrier and increase in critical-resolved shear stress at 0K for solid solution strengthening. Furthermore, both one-dimensional (1D) and two-dimensional (2D) P-N models are implemented to meet the demand to analyze the character and property of dislocation for not only simple FCC and HCP structures but also complex crystals. The implementation of this code has been critically validated by a lot of evaluations and tests including 1D P-N model for complex crystals, 2D P-N model for FCC and HCP metals, pressure field around dislocation core, and solid solution strengthening for alloys. We expect that the automated feature of this code would provide a high-efficiency solution for determining the character and property of dislocation.
DOI: 10.17632/ym5kscj9sz.1
title: The victory project v1.0: An efficient parquet equations solver

description: Victory, i.e. vienna computational tool depository, is a collection of numerical tools for solving the parquet equations for the Hubbard model and similar many body problems. In the current release, we focus on the single-band 2D Hubbard model, based on which generalizations to non-local interactions, multi orbitals and other lattices are straightforward. The parquet formalism is a self-consistent theory at both the single- and two-particle levels, and can thus describe individual fermions as well as their collective behavior on equal footing. This is essential for the understanding of various emergent phases and their transitions in many-body systems, in particular for cases in which a single-particle description fails. Our implementation of victory is in modern Fortran and it fully respects the structure of various vertex functions in both momentum and Matsubara frequency space. We found the latter to be crucial for the convergence of the parquet equations, as well as for the correct determination of various physical observables. In this release, we thoroughly explain the program structure and the controlled approximations to efficiently solve the parquet equations, i.e. the two-level kernel approximation and the high-frequency regulation.
DOI: 10.17632/3jfwsdkryy.2
title: Urban Dictionary definitions dataset for misogyny speech detection

description: The data set is composed of 2,285 definitions gathered from the Urban Dictionary platform from 1999 to 2006. The data was classified as misogynistic and non- misogynistic by three independent researchers with domain knowledge. The data set is available in public repository in a table containing two columns: the text-based definition from Urban Dictionary and its respective classification (1 for misogynistic and 0 for non- misogynistic). Content warning: sexual violence, extreme misogyny, scatology, ‘scat porn’
DOI: 10.17632/9y85hbtp3b.1
title: Consistency in Efficiency Benchmarking: Urban Water Utility Regulation with Performance Improvement

description: This dataset is applicable for an article titled "Consistency in Efficiency Benchmarking: Urban Water Utility Regulation with Performance Improvement"
DOI: 10.17632/cw7tkn22v2.1
title: C and Fortran OpenMP programs for rotating Bose-Einstein condensates

description: We present OpenMP versions of C and Fortran programs for solving the Gross–Pitaevskii equation for a rotating trapped Bose–Einstein condensate (BEC) in two (2D) and three (3D) spatial dimensions. The programs can be used to generate vortex lattices and study dynamics of rotating BECs. We use the split-step Crank–Nicolson algorithm for imaginary- and real-time propagation to calculate stationary states and BEC dynamics, respectively. The simulation input parameters for the C programs are provided via input files, while for the Fortran programs they are given at the beginning of each program and therefore their change requires recompilation of the corresponding program. The programs propagate the condensate wave function and calculate several relevant physical quantities, such as the energy, the chemical potential, and the root-mean-square sizes. The imaginary-time propagation starts with an analytic wave function with one vortex at the trap center, modulated by a random phase at different space points. Nevertheless, the converged wave function for a rapidly rotating BEC with a large number of vortices is most efficiently calculated using the pre-calculated converged wave function of a rotating BEC containing a smaller number of vortices as the initial state rather than using an analytic wave function with one vortex as the initial state. These pre-calculated initial states exhibit rapid convergence for fast-rotating condensates to states containing multiple vortices with an appropriate phase structure. This is illustrated here by calculating vortex lattices with up to 61 vortices in 2D and 3D. Outputs of the programs include calculated physical quantities, as well as the wave function and different density profiles (full density, integrated densities in lower dimensions, and density cross-sections). The provided real-time propagation programs can be used to study the dynamics of a rotating BEC using the imaginary-time stationary wave function as the initial state. We also study the efficiency of parallelization of the present OpenMP C and Fortran programs with different compilers.
DOI: 10.17632/h8n474wvf5.1
title: Code O-SUKI: Simulation of direct-drive fuel target implosion in heavy ion inertial fusion

description: The Code O-SUKI is an integrated 2-dimensional (2D) simulation program system for a fuel implosion, ignition and burning of a direct-drive nuclear-fusion pellet in heavy ion beam (HIB) inertial confinement fusion (HIF). The Code O-SUKI consists of the four programs of the HIB illumination and energy deposition program of OK3 (Comput. Phys. Commun. 181, 1332 (2010)), a Lagrangian fluid implosion program, a data conversion program, and an Euler fluid implosion, ignition and burning program. The OK3 computes the multi-HIBs irradiation onto a spherical fuel target. One HIB is divided into many beamlets in OK3. Each heavy ion beamlet deposits its energy along the trajectory in a deposition layer depending on the particle energy. The OK3 also has a function of a wobbling motion of the HIB axis oscillation, and the HIBs energy deposition spatial detail profile is obtained inside the energy absorber of the fuel target. The spherical target implosion 2D behavior is computed by the 2D Lagrangian fluid code coupled with OK3, until just before the void closure time of the fuel implosion. After that, all the data by the Lagrangian implosion code are converted to them for the Eulerian code. The fusion Deuterium (D)-Tritium (T) fuel and the inward moving heavy tamping material are imploded and deformed seriously at the stagnation phase. The Euler fluid code is appropriate to simulate the fusion fuel compression, ignition and burning. The Code O-SUKI 2D simulation system provides a capability to compute and to study the HIF target implosion dynamics.
DOI: 10.17632/t5xb48z959.2
title: MHC Ligandomes of Reovirus-Treated Tumors

description: Using a mass spectrometry (MS)-based MHC-I ligandome discovery platform, we determined differential tumor MHC-I ligand expression following treatment with oncolytic reovirus in a murine ovarian cancer model. We then tested the immunogenicity and antitumor immune effects of CD8 T cells specific to these reovirus-induced ligands.
DOI: 10.17632/xdyt8k4mt6.1
title: EEG source dataset

description: Sample dataset for EEG source connectivity analysis.
DOI: 10.5281/zenodo.2649597
title: Replication Data for: Replication for: How Much Do Startups Impact Employment Growth in the U.S.?

description: These are data files to support the replication of the blog post "How Much Do Startups Impact Employment Growth in the U.S.?" The replication is not a complete replication attempt. Files were downloaded from the U.S. Census Bureau at https://www.census.gov/ces/dataproducts/bds/data_firm.html on 2019-04-23. A codebook, as provided by the U.S. Census Bureau on the same date, is provided.
DOI: 10.5281/zenodo.2649598
title: Replication Data for: Replication for: How Much Do Startups Impact Employment Growth in the U.S.?

description: These are data files to support the replication of the blog post "How Much Do Startups Impact Employment Growth in the U.S.?" The replication is not a complete replication attempt. Files were downloaded from the U.S. Census Bureau at https://www.census.gov/ces/dataproducts/bds/data_firm.html on 2019-04-23. A codebook, as provided by the U.S. Census Bureau on the same date, is provided.
DOI: 10.17632/gj9gmnymxk.2
title: Supplementary Data - Change & Grow® Therapeutic Model for Addiction: Preliminary Results of a Longitudinal Study

description: This dataset pertains to the first preliminary results of a longitudinal study relating to the impact of a new integrative therapeutic model for addictive disorders and psychological correlates. This first small study had the goal of understanding if the programme has a significant impact on certain psychological complaints that often appear in comorbidity with an addictive disorder, more specifically depressive symptomatology, suicide ideation and anxiety (state and trait as measured by STAI). MoCA was also used to screen for cognitive function at the beginning of treatment and was repeated at the end to evaluate possible changes. Preliminary results indicate a positive impact of the model in study regarding all the relevant variables. The sample is still small and further research needs to be made to confirm the results. Available are: the raw data, the statistical analyses output, information pertaining to the therapeutic model in study.
DOI: 10.17632/n8yy72yx2k.1
title: Data for: Neanderthals and the cult of the Sun Bird

description: Analysis of birds with taphonomic marks.
DOI: 10.5517/ccdc.csd.cc1lpxgn
title: CCDC 1480822: Experimental Crystal Structure Determination

description: Related Article: Zhensheng Li, Yang Liu, Xufeng Hou, Zhihong Xu, Chunhui Liu, Fangzhen Zhang, Zhigang Xie|2019|J.Lumin.|212|306|doi:10.1016/j.jlumin.2019.04.030
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.