cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0959ggf
title: CIL:25698, Trichodina, Chlorella, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: A low power view of a median transverse section of a green Trichodina that lives on the surface of a freshwater snail collected in central Illinois. In this view the abundant endosymbiotic zoochlorellae and macronuclear extent are evident. A large food vacuole is present. TEM taken by G. Antipa in 1968 on a Hitachi HU11A operating at 75kV. The raw film was scanned with an Epson Perfection V750 Pro. This image is best used for quantitative analysis. Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 65nm thickness.
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; osmium tetroxide; uranyl salt; lead salt
Processing history: recorded image; film; unprocessed raw data
Data qualification: Raw
DOI: 10.6075/j0z89cd7
title: CIL:32089, Homo sapiens, osteocarcenoma. In Cell Image Library

description: Preparation: formaldehyde fixed tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: plate reader
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein; distribution of DNA
Visualization methods: EGFP
Processing history: unprocessed raw data
description: The images constitute one row of a 348 well plate. The dose curve consists of 11 dose points and one control. Each concentration is duplicated in adjacent wells. Each well has three fields.
description: This image set is of Transfluor assay where an orphan GPCR (G-protein coupled receptor) is stably integrated into a beta-arrestin GFP (green) expressing U2OS cell line also showing nucleus (red). After one hour incubation with a compound, the cells were quenched with fixative (formaldehyde) and the plate was read on Cellomics ArrayScan HCS Reader using the GPCR Bioapplication. Negative results are a more uniform distribution of GFP throughout the cytoplasm and positive results are a peri-nuclear localization.
Recommended attribution: "We used the SBS Roche Transfluor image set provided by Ilya Ravkin and available from the Broad Bioimage Benchmark Collection (www.broad.mit.edu/bbbc)."
Analysis of the data set can be downloaded from http://www.broadinstitute.org/bbbc/sbs_roche_transfluor.html
DOI: 10.6075/j0s46r44
title: CIL:10057, Rana catesbeiana, barrier epithelial cell. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt; osmium tetroxide
Processing history: unprocessed raw data
description: This group of micrographs illustrate the ultrastructural characteristics of the middle layer of the three meningeal layers that cover the central nervous system. The arachnoid cells contain abundant intermediate filaments that occupy a substantial volume of the cytoplasm. In some cells the intermediate filaments are organized into numerous coils of relatively uniform size and orientation. The coils appear to stack in loose hexagonal arrays (CIL:9301). The plasma membrane of these cells has many caveolae, as illustrated in this micrograph, which also shows several large intermediate filament bundles and desmosomes - insertion sites at the plasma membrane for the intermediate filaments. Adjacent arachnoid cells are connected by large desmosomes. Images were recorded using a Philips EM301 TEM at 80 kv. Original glass plates were scanned and digitized using an Epson V750 flatbed scanner with a step size of 15 micrometers. This group of images complement those published in the reference below. Reference: Michaels, JE, Tornheim, PA. Cell Tissue Res. 236:693-697 (1984).
DOI: 10.6075/j0445k3b
title: CIL:47556, Staphylococcus aureus, neutrophil, endothelial cell. In Cell Image Library

description: Relation to intact cell: intact cells-in vivo imaging
Item type: recorded image
Imaging mode: spinning disk confocal microscopy
Source of contrast: antibody labelling
Processing history: Converted from volocity to .avi
description: Visualization of neutrophil recruitment in capillaries proximal to agarose beads. (Figure 3 - Mac1)
description: Mice were anesthetized with ketamine/xylazine, and then subcutaneous tissue on a dorsal flap was exteriorized. GFP staphylococcus aureus beads were inserted. Antibodies were injected into the vasculature to label neutrophils (red) and endothelial cells (blue). Blocking antibodies against the molecule Mac1 were administered after 2 hours of infection.
DOI: 10.6075/j0tb173z
title: CIL:55539, Homo sapiens. In Cell Image Library

description: Imaging mode: Static digital pathology tissue scans
Visualization methods: Hematoxylin and eosin
description: Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
description: Scan 14_B_ST_A -- The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide​​, TiffSlide, and QuPath​​.
DOI: 10.6075/j0xw4j1c
title: CIL:1596, Caenorhabditis elegans. In Cell Image Library

description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 0 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.6075/j0k64hfb
title: CIL:39309, Paramecium multimicronucleatum, cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Cross sections of striated bands and infraciliary lattice arms. Filaments of the striated bands are less densely packed than the infraciliary lattice. Kinetodesmal fibers and postciliary microtubules are also cross sectioned and are seen to come to lie near each other in the lateral ridges. A linkage would provide additional strength to the kineties. The observer is looking at a cross section of the cell from the posterior toward the anterior of the cell. TEM taken on 6/28/69 by R. Allen with Philips 300 operating at 60kV. Neg. 36,500X.
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in epoxy resin embedment; microtome-sectioned tissue
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM); illumination by electrons
Imaging mode: detection of electrons; film
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: stain with broad specificity; uranyl salt; osmium tetroxide; lead
Processing history: recorded image; film
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Standard glutaraldehyde fixation followed by osmium tetroxide, dehydrated in alcohol and embedded in an epoxy resin. Microtome sections prepared at approximately 75nm thickness. The raw negative was scanned with an Epson Perfection V750 Pro and this high resolution image is best used for quantitative analysis. Additional information available at (http://www5.pbrc.hawaii.edu/allen/).
DOI: 10.15468/dl.waqrf7
title: Occurrence Download

description: A dataset containing 56631385 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((83.50235 23.56362,88.50236 23.56362,93.50236 23.56362,93.50236 18.56362,98.50236 18.56362,103.50236 18.56362,103.50236 13.56362,103.50236 8.56362,103.50236 3.56362,103.50236 -1.43638,108.50236 -1.43638,113.50236 -1.43638,113.50236 3.56362,118.50236 3.56362,118.50236 8.56362,123.50236 8.56362,123.50236 13.56362,123.50236 18.56362,128.50236 18.56362,128.50236 23.56362,133.50236 23.56362,133.50236 28.56362,133.50236 33.56362,128.50236 33.56362,128.50236 38.56362,133.50236 38.56362,133.50236 43.56362,138.50236 43.56362,138.50236 48.56362,138.50236 53.56362,133.50236 53.56362,128.50236 53.56362,128.50236 58.56362,123.50236 58.56362,118.50236 58.56362,118.50236 53.56362,113.50236 53.56362,113.50236 48.56362,108.50236 48.56362,108.50236 43.56362,103.50236 43.56362,98.50236 43.56362,98.50236 48.56362,93.50236 48.56362,93.50236 53.56362,88.50236 53.56362,83.50235 53.56362,83.50235 48.56362,78.50235 48.56362,78.50235 43.56362,73.50235 43.56362,68.50235 43.56362,68.50235 38.56362,68.50235 33.56362,73.50235 33.56362,73.50235 28.56362,78.50235 28.56362,78.50235 23.56362,83.50235 23.56362)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "LastInterpreted is greater than or equal to 2025-10-08",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 56631385 records from 6216 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009337-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc60jk8
title: CCDC 179259: Experimental Crystal Structure Determination

description: Related Article: E.Freire, S.Baggio, M.T.Garland, R.Baggio|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1403|doi:10.1107/S0108270101016481
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jnc
title: CCDC 179262: Experimental Crystal Structure Determination

description: Related Article: K.A.Abboud, P.N.Nickias, E.Y.-X.Chen|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1408|doi:10.1107/S010827010101592X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jpd
title: CCDC 179263: Experimental Crystal Structure Determination

description: Related Article: J.F.Gallagher, K.Hanlon, J.Howarth|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1410|doi:10.1107/S0108270101015591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jqf
title: CCDC 179264: Experimental Crystal Structure Determination

description: Related Article: J.F.Gallagher, K.Hanlon, J.Howarth|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1410|doi:10.1107/S0108270101015591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jrg
title: CCDC 179265: Experimental Crystal Structure Determination

description: Related Article: M.Rolland, T.Kassem, V.Rolland, J.Martinez|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1415|doi:10.1107/S0108270101014597
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jsh
title: CCDC 179266: Experimental Crystal Structure Determination

description: Related Article: M.Rolland, T.Kassem, V.Rolland, J.Martinez|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1415|doi:10.1107/S0108270101014597
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jtj
title: CCDC 179267: Experimental Crystal Structure Determination

description: Related Article: A.Linden, Xianfeng Li, C.Kuan Lee|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1418|doi:10.1107/S0108270101014974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jvk
title: CCDC 179268: Experimental Crystal Structure Determination

description: Related Article: A.Linden, Xianfeng Li, C.Kuan Lee|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1418|doi:10.1107/S0108270101014974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jwl
title: CCDC 179269: Experimental Crystal Structure Determination

description: Related Article: N.S.Kumar, K.C.Kumara Swamy|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1421|doi:10.1107/S0108270101015359
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jyn
title: CCDC 179271: Experimental Crystal Structure Determination

description: Related Article: V.M.Lynch, P.A.Gale, J.L.Sessler, D.Madeiros|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1426|doi:10.1107/S0108270101015931
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60jzp
title: CCDC 179272: Experimental Crystal Structure Determination

description: Related Article: V.M.Lynch, P.A.Gale, J.L.Sessler, D.Madeiros|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1426|doi:10.1107/S0108270101015931
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k0r
title: CCDC 179273: Experimental Crystal Structure Determination

description: Related Article: C.A.Bayse, B.K.Carpenter, R.L.Luck|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1429|doi:10.1107/S0108270101015918
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k1s
title: CCDC 179274: Experimental Crystal Structure Determination

description: Related Article: J.Janczak, G.J.Perpetuo|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1431|doi:10.1107/S0108270101016031
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k2t
title: CCDC 179275: Experimental Crystal Structure Determination

description: Related Article: R.A.Lalancette, H.W.Thompson|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1434|doi:10.1107/S0108270101015943
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k3v
title: CCDC 179276: Experimental Crystal Structure Determination

description: Related Article: A.S.Lyakhov, P.N.Gaponik, S.V.Voitekhovich, L.S.Ivashkevich, A.A.Kulak, O.A.Ivashkevich|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1436|doi:10.1107/S0108270101016006
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k4w
title: CCDC 179277: Experimental Crystal Structure Determination

description: Related Article: A.Usman, I.A.Razak, Hoong-Kun Fun, S.Chantrapromma, Yan Zhang, Jian-Hua Xu|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1438|doi:10.1107/S0108270101016304
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k5x
title: CCDC 179278: Experimental Crystal Structure Determination

description: Related Article: A.Usman, I.A.Razak, S.Chantrapromma, Hoong-Kun Fun, J.K.Ray, S.Das Adhikari, B.P.Datta|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1441|doi:10.1107/S010827010101681X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k6y
title: CCDC 179279: Experimental Crystal Structure Determination

description: Related Article: A.Usman, S.Chantrapromma, Hoong-Kun Fun|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1443|doi:10.1107/S0108270101016742
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k7z
title: CCDC 179280: Experimental Crystal Structure Determination

description: Related Article: A.Usman, S.Chantrapromma, Hoong-Kun Fun|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1443|doi:10.1107/S0108270101016742
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc60k80
title: CCDC 179281: Experimental Crystal Structure Determination

description: Related Article: R.Puliti, C.A.Mattia, A.De Fazio, M.R.Ghiara, L.Mazzarella|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|1447|doi:10.1107/S0108270101016365
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.