cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8c5jwvkvsz.4
title: Dataset: Mesoscale assessment of sedentary coastal fish density using vertical underwater cameras.

description: Accurate and precise monitoring of absolute density (i.e., number of fish per area or volume unit) of exploited fish stocks would be strongly advisable for deriving the stock's status and for designing proper management plans. Moreover, monitoring should be achieved at relevant (i.e., large enough) temporal and spatial scales. This objective is particularly challenging for data-poor fisheries, as it uses to be the case of recreational fishing. Therefore, here, as a proof of concept, the feasibility of underwater video monitoring (vertical unbaited cameras) for estimating the absolute density of coastal sedentary fish species is demonstrated. The absolute density of a small serranid (Serranus scriba) has been estimated with suitable accuracy and precision alongside the south coast of Mallorca Island (nearly 100 km). Fish density ranged between 2 ind/km2 and 59,115 ind/km2. These large differences are explained by exposure to fishing, and by minor site-specificities of habitat and depth, all well within the previously reported environmental range of the studied species. Site-specific, seemingly long-term, effects of fishing are negatively correlated with fish density, but short-term effects (assessed by the interaction between exposure to fishing and before/after the season when recreational fishing accumulated at the studied area) were not detected. We suggest that the short-term effects of fishing may remain undetected because highly exploited sites could inhabit fish that are already non-vulnerable to fishing, irrespective of the short-term fishing pressure exerted. Such a process may explain some hyperdepletion patterns and should prevent the use of fisheries-dependent data for monitoring fish density.
DOI: 10.17632/6pk2yyyn6h.1
title: Tanning Secret Shopper Study - Supplement

description: Supplement for manuscript "The paradoxical promotion of ultraviolet tanning by salons offering a sunless tanning option: A cross-sectional secret shopper study"
DOI: 10.17632/jjhpfxz5m7.1
title: Data to Accompany:  Epidemiological Patterns of Cannabis- and Substance- Related Congenital Orofacial Anomalies Across Europe 2010-2019: Space-Time and Causal Inference Study

description: Data accompany paper of the above title.
DOI: 10.17632/smhwct443j.1
title: mRNA vaccination in octogenarian nuns 15 and 20 months after recovery from COVID-19 elicits robust immune and antibody responses that include Omicron

description: Immune transcriptome, antibody repertoire, anti-IgG and neutralizing antibody levels to SARS-CoV-2 spike protein and cytokine levels in 16 nuns (median 81 years) that had received the BNT162b2 mRNA vaccine 15 and 20 months after recovering from COVID-19 and in 5 previously infected nuns (median 86 years) that had received two doses 10 months after their infection in comparison to 14 naïve persons (median 58 years) and 5 naïve nuns (median 73 years) receiving two doses.
DOI: 10.17632/zmxmp42g9p.1
title: Demographic, exposure, clinical, biochemical and diagnostic data of febrile patients recruited for the largest field study on leptospirosis in Sri Lanka

description: This dataset includes data from febrile patients recruited for a large hospital-based study in Sri Lanka from 2016 to 2019. The variables include primary socio-demographic data, exposure data, clinical data, biochemical and investigation data. Some of these data are available as serial data from admission to discharge daily. Microscopic agglutination test, quantitative PCR of whole blood, urine and serum e and blood for culture were performed to diagnose the patients with leptospirosis.
DOI: 10.17036/researchdata.aston.ac.uk.00000539
title: Effects of stimulus naturalness and contralateral interferers on lexical bias in consonant identification
DOI: 10.17632/tpkjf49r6z.2
title: Data for: Grazer regulation of sinking carbon fluxes in a North Pacific cyclonic eddy

description: The following supplementary datasets consist of informations of physical, chemical, phytoplankton pigments, biological productivity, zooplankton and particle organic carbon flux responses to a cyclonic eddy in the high resolution transect and repeatedly sampling station during the eddy evolution in the subtropical Northwest Pacific Gyre.
DOI: 10.17632/64b9hm8zdn.1
title: Data for: Epidemiological Patterns of Cannabis- and Substance- Related General Congenital Anomalies Across Europe 2010-2019: Space-Time and Causal Inference Study.

description: Data accompany paper of the above title.
DOI: 10.17632/kbcbpnv394.1
title: Community involvement in coastal infrastructure adaptation should balance necessary complexity and perceived effort

description: Sea level rise and growing coastal populations are among the factors creating an urgent need for new and updated coastal infrastructure. Successful adaptation of infrastructure requires public participation, and it is important to elicit accurate feedback from surveys and in-person interactions. But there remains a need for evidence about the efficacy of potential tools. This research compared public responses to a single question about risk with responses to a series of questions based on multidimensional categories of risk. Public evaluations of risk were not practically different. Moreover, the multidimensional system imposed more cognitive strain on participants, which could unintentionally discourage public participation in the climate adaptation process. In this case, the single question provides the same input, with less effort. This finding is a reminder that effective risk communication for managing adaptation processes requires considering both the quality of public input and the effort required to provide it.
DOI: 10.17632/3wkjfswc7g.1
title: An extended mixed finite element method for elliptic interface problems

description: Bibliography files for ''An extended mixed finite element method for elliptic interface problems''
to be published in  Computers and Mathematics with Applications.
DOI: 10.17632/8s3mm9vwpg.1
title: Temporal changes in the stress regime on the seismogenic zone of 2015 Gorkha Earthquake

description: Data collection: 1988/08/20 to 2016/11/27

Contact information: Bishal Maharjan, Central Department of Geology, Tribhuvan University, Kirtipur, Kathmandu, Nepal, bishalmaharjan85@gmail.com

This repository contains the following datasets:
1. COMPILED FOCAL MECHANISM DATASETS (compiled after: see original manuscript)
2. WEIGHTED DATASETS FOR PRE-SEISMIC PERIOD AND POST-SEISMIC PERIOD (for weighting procedure: see original manuscript)
3. RESULTS OF STRESS INVERSION FOR PRE-SEISMIC PERIOD AND POST-SEISMIC PERIOD
DOI: 10.17632/8wpgzrp33s.1
title: Spectral radiative properties of black PMMA

description: Absorbance_50C_FTIR-ATR.xlsx: Absorbance data of black PMMA measured by FTIR-ATR spectrometer using sample thickness of 175 µm at temperature of 50 C
Absorbance_150C_FTIR-ATR.xlsx: Absorbance data of black PMMA measured by FTIR-ATR spectrometer using sample thickness of 175 µm at temperature of 150 C
Absorption coefficient.xlsx: Extracted absorption coefficient of black PMMA for the wavelength range from 0.25 to 25 µm
Absorptive index.xlsx: Absorptive index of black PMMA for the wavelength range from 0.25 to 25 µm
Diffuse reflectivity.xlsx: Diffuse reflectivity of black PMMA measured by UV-Vis-NIR spectrometer for the black PMMA sample with thickness of 6 mm
Effective absorption coefficient.xlsx: Calculated effective absorption coefficient of black PMMA for the gray modeling of radiation as a function of source temperature and depth from the sample surface
Refractive index.xlsx: Extracted refractive index of black PMMA for the wavelength range from 0.25 to 25 µm
Total reflectivity.xlsx: Total reflectivity of black PMMA measured by UV-Vis-NIR spectrometer for the black PMMA sample with thickness of 6 mm
Transmissivity_33um_FTIR.xlsx: Measured transmissivity for the black PMMA sample with thickness of 33 µm using FTIR spectrometer
Transmissivity_50um_FTIR.xlsx: Measured transmissivity for the black PMMA sample with thickness of 50 µm using FTIR spectrometer
Transmissivity_65um_FTIR.xlsx: Measured transmissivity for the black PMMA sample with thickness of 65 µm using FTIR spectrometer
Transmissivity_50um_UV-Vis-NIR.xlsx: Measured transmissivity for the black PMMA sample with thickness of 50 µm using UV-Vis-NIR spectrometer
Transmissivity_73um_UV-Vis-NIR.xlsx: Measured transmissivity for the black PMMA sample with thickness of 73 µm using UV-Vis-NIR spectrometer
DOI: 10.17632/84g8yxw5gh.2
title: Two-Month Individually Supervised Exercise Therapy Improves Walking Speed, Step Length and Temporal Gait Symmetry in Chronic Stroke Patients: A before-after trial

description: Gait asymmetry is common after stroke and is a major risk factor for falls. In particular, temporal gait asymmetry often remains in the chronic stage of stroke. However, health insurance does not cover rehabilitation for patients with chronic stroke in many countries. Accordingly, it is undetermined whether individually supervised exercise therapy has beneficial effects on chronic hemiparetic gait. Patients with stroke (n = 25) over 6 months after onset participated. The patients performed 70 min of individually supervised exercise therapy twice weekly for 2 months for 16 sessions with qualified personnel. The intervention significantly reduced the pre-swing phase on the paretic side. In addition, there was a significant improvement in pre-swing phase symmetry in those with great asymmetry prior to the intervention. The step length significantly increased after the intervention on both sides. The walking time at both comfortable and maximum speeds was significantly shortened. Our findings suggest that there remains scope to improve gait ability with individually supervised exercise therapy in patients with chronic stroke whose functional recovery is often considered unlikely. This type of intervention may be a simple and effective option to improve gait parameters, including temporal asymmetry, even in patients with chronic stroke.
DOI: 10.6084/m9.figshare.19307192
title: ReplicationPackage_EmpiricalTD

description: <pre>We provide a .csv file for eight software systems open source, in which you can find all the information related to Technical Debt, extracted through the Sonarqube tool, and software quality metrics collected thanks to CK tools. In the Systems Date folder, it is possible to find for each system, a file containing the list of commits with the relative date, and the integration script.</pre>
DOI: 10.6084/m9.figshare.19307192.v2
title: ReplicationPackage_EmpiricalTD

description: <pre>We provide a .csv file for eight software systems open source, in which you can find all the information related to Technical Debt, extracted through the Sonarqube tool, and software quality metrics collected thanks to CK tools. In the Systems Date folder, it is possible to find for each system, a file containing the list of commits with the relative date, and the integration script.</pre>
DOI: 10.6084/m9.figshare.19307192.v1
title: ReplicationPackage_EmpiricalTD

description: <pre>We provide a .csv file for eight software systems open source, in which you can find all the information related to Technical Debt, extracted through the Sonarqube tool, and software quality metrics collected thanks to CK tools. In the Systems Date folder, it is possible to find for each system, a file containing the list of commits with the relative date.</pre>
DOI: 10.6084/m9.figshare.19354217
title: Dataset for the analyses of newt abundance dynamics in northern Italy

description: Dataset and scripts used to run the analyses for newt abundance dynamics in northern Italy, along relative abundance of selected fish species at 45 locations across the study region between 1998 and 2007.<br>Newt counts and environmental characteristics were directly retreived on the field by the authors.<br>The relative abundance of selected fish species at 45 locations across the study region between 1998 and 2007 were retrieved from Puzzi C.M., Trasforini S., Bardazzi M.A., Polisciano N., Montonati S. & Maggio A. (2007). Carta provinciale delle vocazioni ittiche. Provincia di Milano. Available at:https://www.regione.lombardia.it/wps/portal/istituzionale/HP/DettaglioRedazionale/servizi-e-informazioni/cittadini/agricoltura/pesca/pianificazione-ittica/pianificazione-ittica-provinciale).The 45 locations do not correspond to study sites of newt population dynamics but were used as indicators of the regional-level trend of fish species.<br>
DOI: 10.5281/zenodo.6351553
title: Raw Data for the article: Transjugular Intrahepatic Portosystemic Shunt: A Single-Centre Mid-term Experience Using the Viatorr Controlled-Expansion Stent

description: Authors reported a high incidence of hepatic encephalopathy (HE) using the Viatorr Controlled Expansion stent (VCX) (Gore, Flagstaff AZ) in a cohort of 33 patients underwent transjugular intrahepatic portosystemic shunt (TIPS) creation. In detail 6 and 12 month overall HE rate was 53% and 61%. Those results are different as compared to our preliminary experience, with the same stent, in which the overall HE rate was 22% in a cohort of 75 patients and with a mean follow up of 5.8 months.
DOI: 10.5281/zenodo.6351552
title: Raw Data for the article: Transjugular Intrahepatic Portosystemic Shunt: A Single-Centre Mid-term Experience Using the Viatorr Controlled-Expansion Stent

description: Authors reported a high incidence of hepatic encephalopathy (HE) using the Viatorr Controlled Expansion stent (VCX) (Gore, Flagstaff AZ) in a cohort of 33 patients underwent transjugular intrahepatic portosystemic shunt (TIPS) creation. In detail 6 and 12 month overall HE rate was 53% and 61%. Those results are different as compared to our preliminary experience, with the same stent, in which the overall HE rate was 22% in a cohort of 75 patients and with a mean follow up of 5.8 months.
DOI: 10.5281/zenodo.6351420
title: Proteomics data of mitochondrial fraction of CRL-2097 cancer cell line model

description: The cancer cell line model developed using human dermal fibroblasts CRL-2097 was used in these experiments: Sample 1 - CRL2097 + hTERT Sample 2 - CRL2097 + hTERT + LT Sample 2 - CRL2097 + hTERT + LT + Ras The mitochondrial fraction was prepared from each of these cell lines and analysed via mass spec for their proteomics. The experiment was done in duplicates.
DOI: 10.5281/zenodo.6351419
title: Proteomics data of mitochondrial fraction of CRL-2097 cancer cell line model

description: The cancer cell line model developed using human dermal fibroblasts CRL-2097 was used in these experiments: Sample 1 - CRL2097 + hTERT Sample 2 - CRL2097 + hTERT + LT Sample 2 - CRL2097 + hTERT + LT + Ras The mitochondrial fraction was prepared from each of these cell lines and analysed via mass spec for their proteomics. The experiment was done in duplicates.
DOI: 10.5281/zenodo.6351600
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.5281/zenodo.6351619
title: Gaussian files SU-8 chemical removal study

description: Gaussian 16 input and output files (logs) for calculations of the Gibbs free energy of various model compouds of interest to study the reaction of dimethylamine with SU-8 and its effect on ether cleavage in concentrated sulfuric acid.
DOI: 10.5281/zenodo.6351618
title: Gaussian files SU-8 chemical removal study

description: Gaussian 16 input and output files (logs) for calculations of the Gibbs free energy of various model compouds of interest to study the reaction of dimethylamine with SU-8 and its effect on ether cleavage in concentrated sulfuric acid.
DOI: 10.5281/zenodo.6351585
title: Supplementary files - Evaluation of MALDI-TOF MS technology in small ruminant milk adulteration using raw bovine milk

description: The dataset is a part of Supplementary file for the manuscript: <strong>Evaluation of MALDI-TOF MS technology in small ruminant milk adulteration using raw bovine milk</strong> by L. Rysova, P. Cejnar, O. Hanus, V. Legarova, J. Havlik, H. Nejeschlebova, I. Nemeckova, R. Jedelska, M. Bozik, submitted to <em>Journal of Dairy Science</em> (Manuscript ID JDS.2021-21396), Received October 8, 2021, Accepted January 31, 2022, Corresponding author: bozik@af.czu.cz, https://doi.org/10.3168/jds.2021-21396 <strong>File 1:</strong> Detailed MALDI-TOF method description <strong>File 2: </strong>Quantification of milk adulteration – calibration of the model Quantification of milk adulteration – calibration of the model <strong>Table S1: </strong>Baseline characteristics of pure bovine milk which was used as an adulterant of caprine milk<strong> </strong> <strong>Table S2: </strong>Baseline characteristics of pure bovine milk which was used as an adulterant of ovine milk <strong>Table S3: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using set A as the training set and set B as the test set. <strong>Table S4: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using both, set A and set B , as the one training set and set C as the test set. <strong>Table S5: </strong>Root mean squared error (RMSE) of predicted caprine and ovine adulterated milk samples using set AB as the training set and set C as the test set. The authors thank the <strong>Ministry of Agriculture of the Czech Republic (grant NAZV QK1920222 in the program ZEMĚ)</strong> for the financial support and <strong>METROFOOD-CZ research infrastructure</strong> (Prague,Czech Republic; <strong>MEYS Grant No: LM2018100</strong>) for access to its facilities. P. C. acknowledges support by the <strong>Ministry of Education, Youth and Sports of the Czech Republic (Prague, Czech Republic; grant LTAIN19007</strong> Development of Advanced Computational Algorithms for Evaluating Post-surgery Rehabilitation) for data analysis.
DOI: 10.5281/zenodo.6351630
title: Raw Data for the article: Portal vein puncture-related complications during transjugular intrahepatic portosystemic shunt creation: Colapinto needle set vs Rösch-Uchida needle set

description: Transjugular portal vein puncture is considered the riskiest step in TIPS creation with possible incidence of portal vein puncture-related complications (PVPC). The Colapinto and the Rösch-Uchida needle sets are two different needle sets currently available. To date, there have been no randomized control trials or systematic reviews which compare the incidence of PVPC when using the two different needle sets. The aim of this literature review is to assess the rate of PVPC associated with the different needle sets used in the creation of TIPS. From the described search, 1500 articles were identified and 34 met the inclusion criteria. Outcome measured was the prevalence of PVPC using the different needle sets. Overall 212 (3.6%) PVPC were reported in 5865 patients; 142 (3.5%) reported in 4000 cases using the Rösch-Uchida set and 70 (3.7%) in 1865 patients using the Colapinto set (p = 0.69). PVPC in TIPS creation are not related to the choice of needle set used in the procedure. To our knowledge, this is the first review of its kind, the results of which support the theory that while the rate of PVPC is influenced by many factors, choice of needle set does not seem to be one of them.
DOI: 10.5281/zenodo.6351629
title: Raw Data for the article: Portal vein puncture-related complications during transjugular intrahepatic portosystemic shunt creation: Colapinto needle set vs Rösch-Uchida needle set

description: Transjugular portal vein puncture is considered the riskiest step in TIPS creation with possible incidence of portal vein puncture-related complications (PVPC). The Colapinto and the Rösch-Uchida needle sets are two different needle sets currently available. To date, there have been no randomized control trials or systematic reviews which compare the incidence of PVPC when using the two different needle sets. The aim of this literature review is to assess the rate of PVPC associated with the different needle sets used in the creation of TIPS. From the described search, 1500 articles were identified and 34 met the inclusion criteria. Outcome measured was the prevalence of PVPC using the different needle sets. Overall 212 (3.6%) PVPC were reported in 5865 patients; 142 (3.5%) reported in 4000 cases using the Rösch-Uchida set and 70 (3.7%) in 1865 patients using the Colapinto set (p = 0.69). PVPC in TIPS creation are not related to the choice of needle set used in the procedure. To our knowledge, this is the first review of its kind, the results of which support the theory that while the rate of PVPC is influenced by many factors, choice of needle set does not seem to be one of them.
DOI: 10.5281/zenodo.5742718
title: MALDI-TOF spectra of bovine, caprine and ovine milk and their mixtures

description: In this dataset we provide MALDI-TOF spectra of bovine milk in caprine and ovine milk. The dataset contains normalized spectra of pure milk samples and their mixtures. <strong>Different level of adulteration (0.5%, 1%, 5%, 10%, 20%, 40%, 60%, 80%)</strong> were analyzed throughout the lactation period of goat and sheep. Two different ranges of peptide-protein spectra <strong>(500–4000 Da; 4–20 kDa)</strong> were used. Exported spectra are in TXT files (<em>m/z</em> and intensity) for processing in other software (ex. mMass). Acquisition methods are included. MALDI-TOF MS analysis was performed using an Autoflex Speed (Bruker Daltonics, Germany) equipped with a SmartBeam<sup>TM</sup> II laser (355 nm) and flexControl software (version 3.4 Build 135, Bruker Daltonics, Germany). The dataset is a part of Supplementary file for the manuscript: <em><strong>Evaluation of MALDI‐TOF MS technology in small ruminants’ milk adulteration using raw bovine milk</strong></em> by L. Rysova, P. Cejnar, O. Hanus, V. Legarova, J. Havlik, H. Nejeschlebova, I. Nemeckova, R. Jedelska, M. Bozik, submitted to <em>Journal of Dairy Science</em> (Manuscript ID JDS.2021-21396) on 08-Oct-2021.
description: The authors thank the Ministry of Agriculture of the Czech Republic (grant NAZV QK1920222 in the program ZEMĚ) for the financial support and METROFOOD‑CZ research infrastructure (MEYS Grant No: LM2018100) for access to its facilities. P.C. acknowledges support by the Ministry of Education, Youth and Sports of the Czech Republic (grant LTAIN19007 Development of Advanced Computational Algorithms for Evaluating Post-surgery Rehabilitation) for data analysis.