cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2lvqsz
title: CCDC 2408972: Experimental Crystal Structure Determination

description: Related Article: Ning Li, Jun-Hao Zhang, Wei-Jing Yang, Ming-Sheng Xie, Hai-Ming Guo|2025|Org.Chem.Front.|12|3271|doi:10.1039/D5QO00237K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lvqw2
title: CCDC 2408975: Experimental Crystal Structure Determination

description: Related Article: Ning Li, Jun-Hao Zhang, Wei-Jing Yang, Ming-Sheng Xie, Hai-Ming Guo|2025|Org.Chem.Front.|12|3271|doi:10.1039/D5QO00237K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lvqx3
title: CCDC 2408976: Experimental Crystal Structure Determination

description: Related Article: Ning Li, Jun-Hao Zhang, Wei-Jing Yang, Ming-Sheng Xie, Hai-Ming Guo|2025|Org.Chem.Front.|12|3271|doi:10.1039/D5QO00237K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lvqz5
title: CCDC 2408978: Experimental Crystal Structure Determination

description: Related Article: Ning Li, Jun-Hao Zhang, Wei-Jing Yang, Ming-Sheng Xie, Hai-Ming Guo|2025|Org.Chem.Front.|12|3271|doi:10.1039/D5QO00237K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.16419446
title: Climate Data, Köppen-Geiger Subclasses and Python Scripts for "A Köppen-Geiger Classification Derivative Tailored for Numerical Modeling of Ecosystems within Watershed Dynamics"

description: CC_files_sorted.tar.gz

This archive contains:





MODAL2_E_CLD_FR_YR-MONTH-DAY.FLOAT/ – All the TIFF files used to extract cloud cover data, which were provided as input parameters for the sampling plan through the main_weather.py Python script.



 

sampling_plan.tar.gz

This archive contains:



 All the Python scripts used to extract climate data for building the subclasses (with main_weather.py used to initiate the database construction);

Two Python scripts (check_if_absent.py followed by check_if_only_partial.py) used to validate the database construction phase.

The files (blocks) containing the sampling plan (latitude, longitude)


resultat_degre_polynome_10.tar.gz

This archive contains:





PolyFit_sous_climats_data/ – For each subclass, the data of the polynomial regression, including fitted values and confidence bands;




PolyFit_sous_climats_Figures/ – For each subclass, figures of the polynomial regression with the associated confidence bands.



 

Additional material will be made available shortly in a v2. It will include:



Subclass-to-group assignment files corresponding to group numbers (transverse classification) ranging from 8 to 20;

All scripts and datasets used to perform GLM simulations of Lake Mendota under stationary conditions.
DOI: 10.5281/zenodo.16419447
title: Climate Data, Köppen-Geiger Subclasses and Python Scripts for "A Köppen-Geiger Classification Derivative Tailored for Numerical Modeling of Ecosystems within Watershed Dynamics"

description: CC_files_sorted.tar.gz

This archive contains:





MODAL2_E_CLD_FR_YR-MONTH-DAY.FLOAT/ – All the TIFF files used to extract cloud cover data, which were provided as input parameters for the sampling plan through the main_weather.py Python script.



 

sampling_plan.tar.gz

This archive contains:



 All the Python scripts used to extract climate data for building the subclasses (with main_weather.py used to initiate the database construction);

Two Python scripts (check_if_absent.py followed by check_if_only_partial.py) used to validate the database construction phase.

The files (blocks) containing the sampling plan (latitude, longitude)


resultat_degre_polynome_10.tar.gz

This archive contains:





PolyFit_sous_climats_data/ – For each subclass, the data of the polynomial regression, including fitted values and confidence bands;




PolyFit_sous_climats_Figures/ – For each subclass, figures of the polynomial regression with the associated confidence bands.



 

Additional material will be made available shortly in a v2. It will include:



Subclass-to-group assignment files corresponding to group numbers (transverse classification) ranging from 8 to 20;

All scripts and datasets used to perform GLM simulations of Lake Mendota under stationary conditions.
DOI: 10.5281/zenodo.15630353
title: Dataset underlying: Real-time online monitoring of large-scale tubular photobioreactors through gas-phase composition analysis
DOI: 10.5281/zenodo.15630354
title: Dataset underlying: Real-time online monitoring of large-scale tubular photobioreactors through gas-phase composition analysis
DOI: 10.15468/dl.55u8fh
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carex stenophylla",
 "Year 1970-2000"
 ]
}

 The dataset includes 183 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002476-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfu8q4
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea stenophylla"
 ]
}

 The dataset includes 70 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002477-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28468872
title: Development and validation of a patient knowledge questionnaire for rheumatoid arthritis (PKQ-RA-11) in Danish and German

description: Patient education is a cornerstone of rheumatology care, enabling patients to effectively and safely manage their condition. Standardized patient knowledge assessments are essential for benchmarking care quality and tailoring education to individual needs. This study aimed to develop and validate Danish and German versions of a patient knowledge questionnaire (PKQ) for rheumatoid arthritis (RA). Danish and German adaptations from the English version involved a forward-and-backward translation process. Face validity was assessed with patients with RA in Denmark and Germany. Subsequently, the generated PKQ-RA-11 versions were tested in Danish and German RA patients. The face-validity assessment included 20 patients (10 Danish, 10 German). Adjustments in the Danish version included rephrasing options and aligning with digital patient education content. The German version followed the refined Danish version with necessary cultural adjustments. PKQ-RA-11 comprises 11 multiple-choice questions with a scoring system to minimize guessing. The final PKQ-RA-11 was completed by 175 Danish and 174 German patients; mean completion time was 7.5 and 7.4 minutes, respectively. Mean ± sd baseline PKQ-RA-11 scores were 7.9 ± 1.6 for Danish and 6.2 ± 2.5 for German participants. Longitudinal data from Denmark indicated an increase in knowledge scores following patient education, shown by a mean score of 8.6 ± 1.5, demonstrating the tool’s responsiveness to changes in patient understanding of RA. PKQ-RA-11 is a standardized tool for assessing disease-related knowledge in individuals with RA. It can be used to provide objective and transparent measures of patient understanding in educational programmes, clinical practice, or research.
DOI: 10.6084/m9.figshare.28468872.v1
title: Development and validation of a patient knowledge questionnaire for rheumatoid arthritis (PKQ-RA-11) in Danish and German

description: Patient education is a cornerstone of rheumatology care, enabling patients to effectively and safely manage their condition. Standardized patient knowledge assessments are essential for benchmarking care quality and tailoring education to individual needs. This study aimed to develop and validate Danish and German versions of a patient knowledge questionnaire (PKQ) for rheumatoid arthritis (RA). Danish and German adaptations from the English version involved a forward-and-backward translation process. Face validity was assessed with patients with RA in Denmark and Germany. Subsequently, the generated PKQ-RA-11 versions were tested in Danish and German RA patients. The face-validity assessment included 20 patients (10 Danish, 10 German). Adjustments in the Danish version included rephrasing options and aligning with digital patient education content. The German version followed the refined Danish version with necessary cultural adjustments. PKQ-RA-11 comprises 11 multiple-choice questions with a scoring system to minimize guessing. The final PKQ-RA-11 was completed by 175 Danish and 174 German patients; mean completion time was 7.5 and 7.4 minutes, respectively. Mean ± sd baseline PKQ-RA-11 scores were 7.9 ± 1.6 for Danish and 6.2 ± 2.5 for German participants. Longitudinal data from Denmark indicated an increase in knowledge scores following patient education, shown by a mean score of 8.6 ± 1.5, demonstrating the tool’s responsiveness to changes in patient understanding of RA. PKQ-RA-11 is a standardized tool for assessing disease-related knowledge in individuals with RA. It can be used to provide objective and transparent measures of patient understanding in educational programmes, clinical practice, or research.
DOI: 10.5281/zenodo.18326658
title: Wikivoyage-Korpus: Korpusquellen der deutschen Sprachversion von Wikivoyage im TEI-Format

description: Das Wikivoyage-Korpus auf dwds.de enthält Volltexte aus den Artikeln aus der deutschen Sprachversion des Wikivoyage-Reiseführers der Wikimedia Foundation auf der Basis des Datenbank-Abzugs vom 1. 1. 2026. Texte aus anderen Seitenarten (Diskussionen etc.) wurden nicht aufgenommen.

Das Wikivoyage-Korpus wurde nach dem Vorbild des Wikipedia-Korpus auf dwds.de konzipiert. Es eignet sich damit insbesondere für die Recherche nach lexikographischen Belegen.

Verfügbar sind hier die Quellen des Wikivoyage-Korpus auf dwds.de im XML/TEI-Format als teiCorpus-Datei. Wie die originalen Wikivoyage-Artikel stehen sie unter der Lizenz "Creative Commons Attribution/Share Alike".
DOI: 10.5281/zenodo.7568517
title: Wikivoyage-Korpus: Korpusquellen der deutschen Sprachversion von Wikivoyage im TEI-Format

description: Das Wikivoyage-Korpus auf dwds.de enthält Volltexte aus den Artikeln aus der deutschen Sprachversion des Wikivoyage-Reiseführers der Wikimedia Foundation auf der Basis des Datenbank-Abzugs vom 1. 1. 2026. Texte aus anderen Seitenarten (Diskussionen etc.) wurden nicht aufgenommen.

Das Wikivoyage-Korpus wurde nach dem Vorbild des Wikipedia-Korpus auf dwds.de konzipiert. Es eignet sich damit insbesondere für die Recherche nach lexikographischen Belegen.

Verfügbar sind hier die Quellen des Wikivoyage-Korpus auf dwds.de im XML/TEI-Format als teiCorpus-Datei. Wie die originalen Wikivoyage-Artikel stehen sie unter der Lizenz "Creative Commons Attribution/Share Alike".
DOI: 10.5281/zenodo.18008416
title: Probabilistic Mechanism Graphs for GWAS Gene Prioritization - External Validations

description: This release provides a complete, self-contained reproduction package for "Mechanism‑First Causal Graphs for Noncoding GWAS". It contains the scripts, processed result files, source code, and a step‑by‑step guide needed to reproduce the paper’s quantitative claims from processed data. The package highlights the mechanism‑graph implementation (noisy‑OR aggregation + correlation corrections), calibration and benchmark artifacts, and concise reproduction instructions.

Contents



Reproduction scripts: reproduce_paper_claims.py, helper scripts

Processed results: data/processed/* (locus summaries, calibration metrics, benchmark tables)

Source snapshot: mechanism-graph-source-2026-01-21.zip

Reproduction guide: DATA_REPRODUCTION_GUIDE.md, REPRODUCE.md

Results summary: reproduction_results_summary.json

License & citation: LICENSE, CITATION.cff


Key reproduced results (included in package)



Final calibration: ECE = 0.012 (per‑module ECE < 0.05)

Benchmark recall@20: 0.76 [0.71–0.81] vs L2G 0.58

CRISPR benchmark: AUPRC = 0.71 [0.67–0.75]

eQTL replication: 96.8% (exceeds claimed ≥78%)


Quick reproduction



Create environment: conda env create -f [environment.yml](http://_vscodecontentref_/6) && conda activate mechanism-gwas

Run reproduction: python scripts/reproduce_paper_claims.py

See full instructions: DATA_REPRODUCTION_GUIDE.md


Notes



Large raw/external data (>79 GB) are NOT included; processed inputs required for rapid reproduction are included.
DOI: 10.6084/m9.figshare.26871180
title: Pesticides in Latin American and Caribbean freshwater: a critical review

description: Pesticides used in food production can contaminate freshwater ecosystems. We present a critical analysis of pesticide use in Latin America and the Caribbean (LAC) from 1990 to 2020 and a systematic review of scientific literature about the presence of pesticides in freshwater, encompassing studies published from 1990 to 2023. Data were collected from FAOStat, PubMed, ScienceDirect, Scopus, and Google Scholar. Brazil was the primary pesticide user, with an annual consumption of 231 621 t, followed by Argentina (132 255 t) and Colombia (52 553 t). In 2020, LAC had the highest rate of pesticide application globally, with Ecuador leading at 13.74 kg/ha. South America dominates the total amount with 90.9% of pesticide use, primarily herbicides (51.5%), while pesticide usage in North and Central America, as well as the Caribbean, varied due to differing agricultural practices. The study examined 221 records for 26 out of 51 countries in the literature, highlighting the significant lack of information from numerous countries. Argentina, Mexico, and Brazil had the highest publication rates. Rivers, streams, and lakes (37%, 20%, and 12%, respectively) were the most studied systems, and research focused mainly on pesticide concentration in water (46%), sediments (27%), and aquatic biota (15%). The imbalance between pesticide usage and monitoring in freshwaters leads to concerns about the awareness of ecological risk. Therefore, the need for environmental monitoring in LAC is urgent to support the research to better understand pesticide impacts on these vital ecosystems.
DOI: 10.6084/m9.figshare.26871180.v2
title: Pesticides in Latin American and Caribbean freshwater: a critical review

description: Pesticides used in food production can contaminate freshwater ecosystems. We present a critical analysis of pesticide use in Latin America and the Caribbean (LAC) from 1990 to 2020 and a systematic review of scientific literature about the presence of pesticides in freshwater, encompassing studies published from 1990 to 2023. Data were collected from FAOStat, PubMed, ScienceDirect, Scopus, and Google Scholar. Brazil was the primary pesticide user, with an annual consumption of 231 621 t, followed by Argentina (132 255 t) and Colombia (52 553 t). In 2020, LAC had the highest rate of pesticide application globally, with Ecuador leading at 13.74 kg/ha. South America dominates the total amount with 90.9% of pesticide use, primarily herbicides (51.5%), while pesticide usage in North and Central America, as well as the Caribbean, varied due to differing agricultural practices. The study examined 221 records for 26 out of 51 countries in the literature, highlighting the significant lack of information from numerous countries. Argentina, Mexico, and Brazil had the highest publication rates. Rivers, streams, and lakes (37%, 20%, and 12%, respectively) were the most studied systems, and research focused mainly on pesticide concentration in water (46%), sediments (27%), and aquatic biota (15%). The imbalance between pesticide usage and monitoring in freshwaters leads to concerns about the awareness of ecological risk. Therefore, the need for environmental monitoring in LAC is urgent to support the research to better understand pesticide impacts on these vital ecosystems.
DOI: 10.6084/m9.figshare.28152230
title: Culture, traditions, and natural resources of Mexican lakes under the influence of anthropogenic pressures and climate change

description: Indigenous peoples and local communities play a vital role in conserving inland water ecosystems and their resources through their cultural and spiritual values embedded in geographic, sociopolitical, and economic contexts. The Central Mexico lakes along the Trans-Mexican Volcanic Belt harbored important pre-Hispanic cultures that hybridized during the Spanish conquest, evolving into modern Mexico and changing how lakes were valued. The terrestrial Spanish ways of life were inimical to the pre-Hispanic indigenous lacustrine culture. After the conquest, various actions were carried out to drain the lakes for urban growth and to provide agricultural land. The result has been a decline (e.g., Lake Cuitzeo, Michoacán) and, in some extreme cases, the near disappearance (e.g., Lake Texcoco, Mexico City) of once extensive waterbodies. Unsustainable use of resources, unsympathetic spatial planning (anthropogenic impacts), and climate change to warmer/drier conditions have all placed additional pressure on the inland ecosystems. Nonetheless, as presented here, the pre-Hispanic lacustrine cultural knowledge and traditions persist locally in some locations, having been perpetuated by Indigenous peoples’ traditions and habits.
DOI: 10.6084/m9.figshare.28152230.v1
title: Culture, traditions, and natural resources of Mexican lakes under the influence of anthropogenic pressures and climate change

description: Indigenous peoples and local communities play a vital role in conserving inland water ecosystems and their resources through their cultural and spiritual values embedded in geographic, sociopolitical, and economic contexts. The Central Mexico lakes along the Trans-Mexican Volcanic Belt harbored important pre-Hispanic cultures that hybridized during the Spanish conquest, evolving into modern Mexico and changing how lakes were valued. The terrestrial Spanish ways of life were inimical to the pre-Hispanic indigenous lacustrine culture. After the conquest, various actions were carried out to drain the lakes for urban growth and to provide agricultural land. The result has been a decline (e.g., Lake Cuitzeo, Michoacán) and, in some extreme cases, the near disappearance (e.g., Lake Texcoco, Mexico City) of once extensive waterbodies. Unsustainable use of resources, unsympathetic spatial planning (anthropogenic impacts), and climate change to warmer/drier conditions have all placed additional pressure on the inland ecosystems. Nonetheless, as presented here, the pre-Hispanic lacustrine cultural knowledge and traditions persist locally in some locations, having been perpetuated by Indigenous peoples’ traditions and habits.
DOI: 10.6084/m9.figshare.26871180.v1
title: Pesticides in Latin American and Caribbean freshwater: a critical review

description: Pesticides used in food production contaminate freshwater ecosystems. We present a critical analysis of pesticide use in Latin America and the Caribbean (LAC) from 1990 to 2020 and a systematic review of scientific literature about the presence of pesticides in freshwater, encompassing studies published from 1990 to 2023. Data were collected from FAOStat, PubMed, ScienceDirect, Scopus, and Google Scholar. Brazil was the primary pesticide user, with an annual consumption of 231,621 t, followed by Argentina (132,255 t) and Colombia (52,553 t). In 2020, LAC had the highest rate of pesticide application globally, with Ecuador leading at 13.74  kg/ha. South America dominates the total amount with 90.9% of pesticide use, primarily herbicides (51.5%), while pesticide usage in North and Central America, as well as the Caribbean, varied due to differing agricultural practices. The study examined 221 records for 26 out of 51 countries in the literature, highlighting the significant lack of information from numerous countries. Argentina, Mexico, and Brazil had the highest publication rates. Rivers, streams, and lakes (37%, 20%, and 12%, respectively) were the most commonly studied systems, and research focused mainly on pesticide concentration in water (46%), sediments (27%), and aquatic biota (15%). The imbalance between pesticide usage and monitoring in freshwaters leads to concerns about the awareness of ecological risk. Therefore, there is an urgent need for increased research on environmental monitoring in LAC to better understand pesticide impacts on these vital ecosystems.
DOI: 10.6084/m9.figshare.28151700
title: Spatiotemporal variations of orthophosphate in a large mesotrophic lake and implications for phytoplankton productivity

description: Information on orthophosphate (PO<sub>4</sub>-P) distributions in large oligotrophic and mesotrophic lakes is limited because PO<sub>4</sub>-P concentrations are low. Using a new procedure based on ion chromatography, we determined spatiotemporal distributions of PO<sub>4</sub>-P concentrations and biogeochemical parameters in the north basin of mesotrophic Lake Biwa in 2018–2019 to clarify the effects of horizontal transportation of nutrients on phytoplankton growth. Above 20 m depth, chlorophyll <i>a</i> peaked in June–July and October–November for 2018 and 2019 while PO<sub>4</sub>-P concentrations usually remained &lt;0.03 μmol L<sup>−1</sup>. Distinct subsurface PO<sub>4</sub>-P maxima of &gt;0.07 μmol L<sup>−1</sup> were detected at 5−10 m depths in May 2019 along a transect connecting littoral and pelagic sites. At &gt;40 m depths, PO<sub>4</sub>-P concentrations increased with depth and were frequently elevated near the bottom, displaying inconsistent seasonality. In both years, increases in PO<sub>4</sub>-P throughout the water column in May were followed by phytoplankton blooms; PO<sub>4</sub>-P increased before the autumnal phytoplankton bloom in 2018 but not in 2019. The spring bloom may be related to horizontal transportation of PO<sub>4</sub>-P from the littoral slope by wind-driven internal waves, whereas the autumnal bloom may be fed by nutrients transported from the hypolimnion by vertical convection. Phosphate enrichment experiments showed that phytoplankton growth was restricted at PO<sub>4</sub>-P concentration &lt;0.014 μmol L<sup>−1</sup> and reached potential maximum growth at &gt;0.05 μmol L<sup>−1</sup>. The horizontal transportation of PO<sub>4</sub>-P by internal waves in spring may play an important role in supplying sufficient nutrients to the euphotic zone in the pelagic region, resulting in enhanced phytoplankton production.