cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7451357.v4
title: A database of atmospheric nitrogen concentration and deposition from a nationwide monitoring network in China

description: Here we present a dataset for inorganic N concentrations and deposition for the period 2010-2015 in China, compiled from the nationwide deposition monitoring network. The dataset comprises information from 32 monitoring sites on concentrations and bulk deposition (wet plus part of dry deposition) fluxes of NH<sub>4</sub><sup>+</sup>-N and NO<sub>3</sub><sup>-</sup>-N, air concentrations and dry deposition fluxes of the major Nr species NH<sub>3</sub>, NO<sub>2</sub>, HNO<sub>3</sub>, and particulate NH<sub>4</sub><sup>+</sup> and NO<sub>3</sub><sup>-</sup>. This unique database is available inter alia to advance understanding of the spatial patterns of inorganic N concentrations and deposition in China and its associated effects, constrain primary Nr (e.g., NH<sub>3</sub>, NO<i><sub>x</sub></i>) emission inventories, and validate outputs of atmospheric chemistry and transport models. <br>
DOI: 10.6084/m9.figshare.7813571.v1
title: Boundary practices of digital humanities collaborations

description: One of the defining characteristics of digital humanities is the emphasis on interdisciplinary collaboration. To coordinate across disciplinary boundaries, the development of common ground is necessary to negotiate goals and practices. Yet how such common ground can be established, and whether adoption of interdisciplinary practices and vocabularies leads participants to drift apart from their disciplinary culture, is underexplored. In this paper I investigate the boundary practices of digital humanities, referring to the interactions of scholars with cross-disciplinary collaborators and disciplinary peers, and how these are configured by disciplinary diversity and physical distance within collaborations. With an online survey, which received 173 responses, I find that the disciplinary diversity of digital humanities collaborations is often small, with participants and leadership mostly from the humanities. The physical distance is often large, increasingly relying on email. I do not find that these dimensions affect the respondents’ frequency of communication with collaborators or peers. I conclude that physical distance and disciplinary diversity cannot be confirmed to affect the frequency of boundary interactions of digital humanities. I furthermore conclude that digital humanities collaborations are biased towards the humanities, rather than a balancing of the digital and the humanities. This dataset thereby provides empirical grounding for discussions of digital humanities as a meeting between the computational domains and the humanities.
DOI: 10.6084/m9.figshare.6796802.v5
title: supplementary data for manuscript "The neonicotinoid, imidicloprid affects gene expression and methylation in the buff-tailed bumblebee Bombus terrestris"

description: Various datasets related to manuscript "The neonicotinoid, imidicloprid affects gene expression and methylation in the<br>buff-tailed bumblebee Bombus terrestris"<br>
DOI: 10.6084/m9.figshare.6796802.v4
title: supplementary data for manuscript "The neonicotinoid, imidicloprid affects gene expression and methylation in the buff-tailed bumblebee Bombus terrestris"

description: Various datasets related to manuscript "The neonicotinoid, imidicloprid affects gene expression and methylation in the<br>buff-tailed bumblebee Bombus terrestris"<br>
DOI: 10.6084/m9.figshare.7928147.v1
title: Comparative experiments with precipitation waters, synthetic rain and three classical tracers: Results from batch tests und column tracer experiments

description: The fileset includes several observation and model data used for figures in a manuscript about the general suitability of using precipitation waters as semi-artifical groundwater tracers. <br>This includes 1.) observation data from 24h soil batch experiments, 2.) observation data from multiple 1D laboratory column displacement tests (5 tracers including deuteriumoxide and water-18O; 4 columns) as well as corresponding model simulations using CXT-Fit and 3.) observation data from column tracer tests with two rain waters and one snowmelt.
DOI: 10.6084/m9.figshare.7240469.v2
title: Data for publication: WHEN FLUORESCENCE IS NOT A PARTICLE: THE TISSUE TRANSLOCATION OF MICROPLASTICS IN DAPHNIA MAGNA SEEMS AN ARTEFACT

description: We conducted a replication study for Rosenkranz et al. (2009).<br><br>Our data consists of CLSM images of Daphnia exposed to 20 nm and 1000 nm polystyrene particles with a number of conditions and specimen treatments.<br>
DOI: 10.6084/m9.figshare.7240469.v1
title: Daphnia tissue translocation study images

description: We conducted a replication study for Rosenkranz et al. (2009).<br><br>Our data consists of CLSM images of Daphnia exposed to 20 nm and 1000 nm polystyrene particles with a number of conditions and specimen treatments.<br>
DOI: 10.6084/m9.figshare.7271399.v3
title: Supplementary Tables

description: Supplementary tables of the following article (currently in preprint in bioRxiv): Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network <br>
DOI: 10.6084/m9.figshare.7271399.v2
title: Supplementary Tables

description: Supplementary tables of the following article (currently in preprint in bioRxiv): Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network <br>
DOI: 10.6084/m9.figshare.7938329.v1
title: Dissonance-Task_Dataset

description: De-identified fMRI dataset for the Dissonance-Task Manuscript.
DOI: 10.6084/m9.figshare.7951181.v2
title: Krause et al. (2019) Earth's Future

description: Output is from three dynamic vegetation models (LPJ-GUESS, LPJ and CABLE-POP) driven by three combinations of climate change and land-use change scenarios (SSP1xRCP26, SSP3xRCP60, SSP5xRCP85). The output also includes simulations in which either land use or climate and CO2 were kept constant from 2014 on to isolate the effects of future land-use change and climate change. Output variables are total carbon pools, NPP, evapotranspiration, surface January and July albedo and total runoff for four different time periods (2015, 2050, 2070, 2090, 20-year averages). Spatial resolution is 0.5° (LPJ-GUESS and LPJ) or 1° (CABLE-POP).<br>
DOI: 10.6084/m9.figshare.7938170.v1
title: Platinum and palladium tetranuclear acetates: the DFT optimised geometries

description: Supporting information for upcoming article.<br><br>The geometries were optimized with the hybrid PBE0 functional and various basis sets using GAMESS-US program. The basis sets were obtained from the EMSL Basis Set Library (https://bse.pnl.gov/bse/portal).
DOI: 10.6084/m9.figshare.1455963.v4
title: Examples data files for phconvert

description: Example data files in different formats that can be converted to Photon-HDF5 format using phconvert.
DOI: 10.6084/m9.figshare.7730627.v2
title: Supplementary Data 1 - ANOVAresults

description: Pan-cancer/cancer-type-specific ANOVA results associating gene fitness-effects to cancer driver-events and microsatellite instability. ANOVA p-values refer to ANOVA tests, T p-values refer to two-sided Student’s t-tests. False discovery rates were calculated within each analysis by collectively correcting p-values with the Storey-Tibshirani method.<br>
DOI: 10.6084/m9.figshare.7730627.v1
title: Supplementary Data 1 - ANOVAresults

description: Pan-cancer/cancer-type-specific ANOVA results associating gene fitness-effects to cancer driver-events and microsatellite instability. ANOVA p-values refer to ANOVA tests, T p-values refer to two-sided Student’s t-tests. False discovery rates were calculated within each analysis by collectively correcting p-values with the Storey-Tibshirani method.<br>
DOI: 10.6084/m9.figshare.7730624.v2
title: Supplementary Data 2 - GPX4diffExp.xlsx

description: Differential expression and single-sample Gene-Set Enrichment Analysis results comparing gene-expression profiles of cell lines sensitive to GPX4 KO (n=113) versus others (n=161). Enrichment p-values were obtained by randomly permuting the gene signature 10,000 times and adjusting for multiple testing using the Benjamini-Hochberg method.<br>
DOI: 10.6084/m9.figshare.7730624.v1
title: Supplementary Data 2 - GPX4diffExp.xlsx

description: Differential expression and single-sample Gene-Set Enrichment Analysis results comparing gene-expression profiles of cell lines sensitive to GPX4 KO (n=113) versus others (n=161). Enrichment p-values were obtained by randomly permuting the gene signature 10,000 times and adjusting for multiple testing using the Benjamini-Hochberg method.<br>
DOI: 10.6084/m9.figshare.7808378.v1
title: Two novel strategies to assess in vivo meiotic protein expression in Arabidopsis thaliana

description: Confocal microscopy images of meiocytes and other tissues collected from <em>Arabidopsis thaliana</em> plants (Col-0 background) expressing 1803F-GFP under control of cloned PCR-amplified promoter elements with putative activities during meiosis.<br>Files names are coded as follows: 'promoter driving 1803F-GFP expression_line number_tissue type (individual image number)'.
DOI: 10.6084/m9.figshare.6126776.v2
title: Codes and Data

description: This folder contains all codes and data necessary to reproduce the analyses and results reported in Lebreton, et al. (2018) Science Advances. <br><br>[M. Lebreton, S. Langdon, M. J. Slieker, J. S. Nooitgedacht, A. E. Goudriaan, D. Denys, R. J. van Holst and J. Luigjes (2018) Two sides of the same coin: monetary incentives concurrently improve and bias confidence judgments, Science Advances (https://doi.org/10.1126/sciadv.aaq0668) ]<br><br>Please note that the codes needs Matlab R2014b or a more resent version, with the Statistics and Machine Learning toolbox.<br><br>
DOI: 10.6084/m9.figshare.7533104.v1
title: Week-Mobility-Network

description: The mobility network
DOI: 10.6084/m9.figshare.7983062.v1
title: Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen

description: <b>Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen</b>
DOI: 10.6084/m9.figshare.7887308.v1
title: Bibliometrics analysis of publications of China University of Petroleum and Sinopec

description: <b>The aim of this research:</b><br>Scientometric investigation of publication activity of China University of Petroleum and Sinopec during 2016-2019 years. Topic Mining from bibliografic texts by network analysis and clustering.<br><b>Bibliographic Resources: </b> Web of Science Core Collection; <br>Dimensions - https://app.dimensions.ai/discover/publication<br><b>Main query:</b><br>Results: 11,226<br>(from Web of Science Core Collection)You searched for: ORGANIZATION-ENHANCED: (China University of Petroleum OR Sinopec)Timespan: 2016-2019. Indexes: SCI-EXPANDED, ESCIWoS Sort by Times Cited 23 files savedrecs([0-22]).txt<b>Files description:</b><br>list of resources Dimensions.txt<br>list-of-files-0-7-KW-634.txt<br>Workflow-some queries from WoS.txt<br>files-15-22-WoS.txt<br><b>Main tools:</b><br><b>VOSviewer - </b>a software tool for constructing and visualizing bibliometric networks - http://www.vosviewer.com/<br><b>KH Coder </b>- a free software for quantitative content analysis or text mining - http://khcoder.net/en/<br><b>Notepad++</b> - a free source code editor - https://notepad-plus-plus.org/<br><b>SmoothCSV -</b> a powerful CSV file editor - https://smoothcsv.com/2/ <b>The Next To-Do List:</b><br>define the files format for the table of contents and the list of captions for pictures<br>visual comparison of graphical resources hosted on Figshare<br>bibliometrics on define topic refers to funding agencies (based on WoS and Scopus; We have no subscription for the dimensions.ai)Suggestions are welcome<br>
DOI: 10.6084/m9.figshare.8010890.v1
title: Boves2018LM2-6.jpg

description: Boves, Château, US4432, LM2.In situ fragmentation of a heated fishbone.This fishbone has been dropped on a floor made with silty material and limestone sand. Trampling has induced the fragmentation of the bone and the incorporation into the floor of small charcoals. The floor cover a previous refuse layer visible at the bottom (charcoal). Ashes and very fine charcoal are visible on top.<br>
DOI: 10.6084/m9.figshare.8014583.v1
title: Artificial data - Probabilistic age sampling.xlsx

description: Artificial data spreadsheets representing the random sampling of ages from alluvial surfaces.
DOI: 10.6084/m9.figshare.6989453.v1
title: MRI Images, Subject (b) no MC and MotionMRI Images

description: Custom 3D FLASH sequence that can apply prospective MC based on the motion estimates.The 3D FLASH sequence has the following parameters: FOV 256 mm × 256 mm × 56 mm with 1 mm × 1 mm × 2 mm voxels (phase/read/slice directions respectively), bandwidth of 1000 Hz/pixel, TR of 15 ms, TE of 2.68 ms, and flip angle 35 degrees.
DOI: 10.6084/m9.figshare.6989426.v1
title: MRI Images, Subject (a) no MC and MotionMRI Images

description: Custom 3D FLASH sequence that can apply prospective MC based on the motion estimates.The 3D FLASH sequence has the following parameters: FOV 256 mm × 256 mm × 56 mm with 1 mm × 1 mm × 2 mm voxels (phase/read/slice directions respectively), bandwidth of 1000 Hz/pixel, TR of 15 ms, TE of 2.68 ms, and flip angle 35 degrees.
DOI: 10.6084/m9.figshare.3761562.v1079
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1078
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.6911924.v3
title: Reaction times and other skewed distributions: problems with the mean and the median

description: Reproducibility package for the article:<br><b>Reaction times and other skewed distributions: problems with the mean and the median</b>Guillaume A. Rousselet & Rand R. Wilcoxpreprint: bioRxiv 383935; <i>doi: https://doi.org/10.1101/383935</i><i><br></i>Contains all the code and data to reproduce the figures and analyses in the article.<i><br></i>
DOI: 10.6084/m9.figshare.3761562.v1081
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1080
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8052953.v2
title: Subject Raw Data

description: Raw data from subjects in the passive group (001-012) and active group (013-024) in a concurrent TMS-EEG study investigating natural frequencies.
DOI: 10.6084/m9.figshare.8052953.v1
title: Participant Raw Data

description: Raw data from participants in the passive group (001-012) and active group (013-024) in a concurrent TMS-EEG study investigating natural frequencies.
DOI: 10.6084/m9.figshare.3761562.v1084
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1083
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8052953.v8
title: Subject Raw Data

description: Raw data from subjects in the passive group (001-012) and active group (013-024) in a concurrent TMS-EEG study investigating natural frequencies.
DOI: 10.6084/m9.figshare.8082644.v1
title: Untitled Item

description: Fastq files used to generate all figures
DOI: 10.6084/m9.figshare.7258922.v2
title: Experiment A. Weekly FMT

description: Weekly fecal transplantation into mice prone to chronic ileitis.
DOI: 10.6084/m9.figshare.7258922.v1
title: FMT

description: fecal transplantation into mice prone to chronic ileitis.
DOI: 10.6084/m9.figshare.3761562.v1092
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1091
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.8127212.v1
title: Untitled Item

description: Aspergillus fumigatus strain assemblies from paired-end reads. These are rough assemblies with known misassemblies in them. Use with caution.
DOI: 10.6084/m9.figshare.3761562.v1098
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1097
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1101
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1100
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1103
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1102
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.7963478.v1
title: Ontogenetic changes in the body plan of the sauropodomorph dinosaur Mussaurus patagonicus reveal shifts of locomotor stance during growth

description: Three-dimensional models of the sauropodomorph Mussaurus patagonicus (includes bones with spline models inside Blender files; requires free software to view; and convex-hull models as 3D objects in .ply format).<br>From Otero, Cuff et al., 2019:https://www.nature.com/articles/s41598-019-44037-1
DOI: 10.6084/m9.figshare.7738901.v2
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Parsed http link status

description: Using a web scrapper, we checked the status of http links detected from scientific papers.<br>The data schema is detailed below:* Type - In which part of the manusript the link was found.* Journal - Title of the journal where the paper was published.* Id - Pubmed's primary identifier for the paper.* Year - When the paper was published.* link - URL parsed from the manuscript text.* code - HTTP code returned when trying to access the webpage.* status - Parsed HTTP code.<br>For status, we followed the convention below.* -1 = Access timed out.* 1 = Accessed succesfully.* 3 = Link was redirected, but still accessible.* 4 = Error, content not found.
DOI: 10.6084/m9.figshare.7738901.v1
title: Dataset: Analysis of the installability and archival stability of omics computational tools - Parsed http link status

description: Using a web scrapper, we checked the status of http links detected from scientific papers.<br>The data schema is detailed below:* Type - In which part of the manusript the link was found.* Journal - Title of the journal where the paper was published.* Id - Pubmed's primary identifier for the paper.* Year - When the paper was published.* link - URL parsed from the manuscript text.* code - HTTP code returned when trying to access the webpage.* status - Parsed HTTP code.<br>For status, we followed the convention below.* -1 = Access timed out.* 1 = Accessed succesfully.* 3 = Link was redirected, but still accessible.* 4 = Error, content not found.
DOI: 10.6084/m9.figshare.5017019.v1
title: New draft itemInvolvement in surface antigen expression by a moonlighting FG-repeat nucleoporin in trypanosomes

description: RNAseq plots for entire dataset discussed in MS.
DOI: 10.6084/m9.figshare.3761562.v1106
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1105
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1111
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.3761562.v1110
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.7685645.v4
title: A dataset of 30-meter annual vegetation phenology indicators (1985-2015) in urban areas of the conterminous United States

description: Data description：<br>This product provides annual (1985-2015) 30-m vegetation phenology (i.e., start of season-SOS; end of season-EOS) in urban areas of the conterminous United States, including: <br>(1) Information about urban clusters *** uCluster_USA_gt500.zip (format: ESRI shapefile): bounding box of each urban cluster with the cluster ID and cityName. The ESRI file can be opened by many opensource softwares (e.g., QGIS)*** US_uCluster_UrbanRuralExtents.zip: spatial extent of urban clusters (‘US_uCluster_label.tif’) and urban and surrounding rural clusters (‘US_uCluster_label_withRural.tif’).<br>(2) Phenology dataset In each zipped folder, it includes three phenology datasets:<br>*** annual SOS from 1985-2015 for each urban cluster *** annual EOS from 1985-2015 for each urban cluster *** COR: correlation of fitted double logistic curve to the observed EVIS for each pixel. The COR should be divided by 10000, and it serves as an uncertainty layer to indicate the fitting performance of the double logistic model.<br>