cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.24373/pdsp-494
title: Value Set Violation Results, PEDSnet Database (2025-07)

description: This analysis reported 5 total value set violations from 4 sites, all of which were small (&gt; 0.05) proportionally to the total number of records and did not violate any thresholds. The controlled fields violated include `imm_route_concept_id`, `observation_concept_id`, and `value_as_concept_id`. The expected values for these fields are provided in the PEDSnet Common Data Model, v5.8.
description: This network analysis indicates the presence any data that fall outside of the range of permissible values defined by PEDSnet conventions for controlled fields with respect to the 5.8 data cycle. All PEDSnet sites as of July 2025 were analyzed, but site names have been anonymized in this report.
description: There were no threshold violations warranting follow-up with any individual site.
DOI: 10.24373/pdsp-495
title: Vocabulary Conformance Results, PEDSnet Database (2025-07)

description: The acceptable ontologies for all fields are listed on the latest version of the DQ dashboard analysis and outlined in the PEDSnet Common Data Model, v5.8. Three threshold violations were flagged for this data cycle: 1. The usage of vocabularies in the `dose_unit_concept_id` field in Drug Exposure that are not in compliance with CDM specifications. The violating vocabularies are CDISC, SNOMED. These make up 8.1% of rows, which is greater than the maximum acceptable value of 0%. 2. The usage of vocabularies in the `measurement_concept_id` field in Measurement Labs that are not in compliance with CDM specifications. The violating vocabularies are CPT4. These make up 7.1% of rows, which is greater than the maximum acceptable value of 5%. 3. The usage of vocabularies in the `immunization_concept_id` field in Immunization that are not in compliance with CDM specifications. The violating vocabularies are CPT4, HCPCS. These make up 2.3% of rows, which is greater than the maximum acceptable value of 0%.
description: This network analysis indicates whether values for a particular field fall outside of the required vocabulary. An example of a vocabulary violation is if an RxNorm code was found in the Immunizations table, which can only take on values from the CVX vocabulary. This is distinct from the Value Set Violations check which identifies conformance to local PEDSnet vocabularies, or value sets. All PEDSnet sites as of July 2025 were analyzed, but site names have been anonymized in this report.
description: The coordinating center has followed up with the flagged sites to remediate the threshold violations for the next data cycle.
DOI: 10.24373/pdsp-496
title: Concept Set Distribution Study Results: CHOP-Geisinger Grant Submission

description: These results display the most commonly used concepts, which is analogous to the most commonly used drug ingredients, for GLP-1RA and SGLT-2I drugs in a cohort of PEDSnet patients. Our key takeaways were: - For GLP-1RA drugs, the most commonly used ingredient was liraglutide (11%) with demaglutide also being well represented (7-8%). The distribution of concepts used is more evenly distributed than the SGLT-2I class. - For SGLT-2I drugs, the most commonly used ingredients were dapagliflozin and empagliflozin, with other codes only representing 2% or less of rows for this cohort. - GLP-1RA drugs are more frequently occurring on the whole within the cohort, which aligns with expectations as SGLT-2I drugs were only recently approved for use in pediatrics.
description: The results of a Concept Set Distribution check using the Single Site, Exploratory, Cross-Sectional parameters. This check investigates concept utilization for a codeset with GLP-1RA and SGLT-2I drugs, facetted by class. This check was run as part of exploratory data analysis to ensure the feasibility of a study being proposed in a joint grant submission between CHOP and Geisinger.
DOI: 10.24373/pdsp-497
title: Source and Concept Vocabularies Study Results: ARPKD

description: - We used ICD codes provided by the investigator specific to ARPKD as input to the check - We noticed that some unexpected source to concept codes occur, often due to post-coordination, i.e. one code in one vocabulary being broken out into more than one in a related vocabulary - In the image, the columns represent each of the 3 ICD codes and the tiles represent each of the associated SNOMED codes. The only SNOMED code specific to ARPKD is the one that shows up on the image with concept_id of 201675 - We used the union of both ICD and SNOMED codesets to identify the pool of patients from which to sample for chart review
description: The results of a Source and Concept Vocabularies check using the Single Site (where all of PEDSnet is considered one site), exploratory, cross-sectional parameters. This check investigates whether ICD codes for ARPKD are always associated with SNOMED codes specific to ARPKD. The check was run to help inform cohort selection for chart review validation.
description: To be fully inclusive of patients of patients with at least one diagnosis for ARPKD for the initial chart review cohort exploration, we included patients in the chart review sample with either an ICD source or a SNOMED standard concept for ARPKD, as we saw that there were some with only an ICD diagnosis for ARPKD without an associated SNOMED diagnosis code. Our intention in the chart review is to explore a broad spectrum of ARPKD presentations in the data, so we value the insight we could gather from false positives to inform the computable phenotype that we plan to build over trying to optimize the APPKD code list at this point in the study to have the highest accuracy.
DOI: 10.15468/dl.8fr6pg
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cajanus grandiflorus",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033680-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17611762
title: İncil'de Bahsedilen Şehirlerin Deprem Riski: Kapsamlı Sismotektonik Analiz ve Olasılıksal Risk Değerlendirmesi

description: Bu çalışma, İncil'de adı geçen dokuz stratejik şehrin (Kudüs, Filippi, Efes, Smyrna, Bergama, Thyatira, Sardis, Philadelphia ve Laodikeia) sismik risk profillerini tarihsel deprem kayıtları, paleosismik veriler ve nicel istatistiksel modellemeler kullanarak değerlendirmektedir. Tarihsel katalogların analizi, Gutenberg-Richter ilişkisi, tekrar periyodu hesaplamaları ve olasılıksal sismik tehlike analizleri (PSHA) ile her şehir için 30, 50 ve 100 yıllık zaman dilimlerinde Mw≥6.5 ve Mw≥7.0 deprem olasılıkları hesaplanmıştır. Sonuçlar, Batı Anadolu graben sistemindeki şehirlerin (İzmir, Akhisar, Alaşehir, Denizli) en yüksek risk grubunda olduğunu göstermektedir.
DOI: 10.5281/zenodo.17611761
title: İncil'de Bahsedilen Şehirlerin Deprem Riski: Kapsamlı Sismotektonik Analiz ve Olasılıksal Risk Değerlendirmesi

description: Bu çalışma, İncil'de adı geçen dokuz stratejik şehrin (Kudüs, Filippi, Efes, Smyrna, Bergama, Thyatira, Sardis, Philadelphia ve Laodikeia) sismik risk profillerini tarihsel deprem kayıtları, paleosismik veriler ve nicel istatistiksel modellemeler kullanarak değerlendirmektedir. Tarihsel katalogların analizi, Gutenberg-Richter ilişkisi, tekrar periyodu hesaplamaları ve olasılıksal sismik tehlike analizleri (PSHA) ile her şehir için 30, 50 ve 100 yıllık zaman dilimlerinde Mw≥6.5 ve Mw≥7.0 deprem olasılıkları hesaplanmıştır. Sonuçlar, Batı Anadolu graben sistemindeki şehirlerin (İzmir, Akhisar, Alaşehir, Denizli) en yüksek risk grubunda olduğunu göstermektedir.
DOI: 10.5281/zenodo.17611663
title: Dataset for drevalpy

description: All preprocessing details can be found in https://github.com/daisybio/preprocess_drp_dataor at https://github.com/daisybio/drevalpy

News:



The pEC50s were shifted by -6 because of the code update -> now corrected.

Meta now contains the gene lists, so they don't have to be duplicated

2 new datasets: BeatAML2 and PDX_Bruna

Corrected wrong original AUC values of CTRPv2

Added MolGNet model to meta

Updated gene lists: intersection gene lists now also intersect BeatAML2 and PDX_Bruna. Reduced gene lists only contain genes contained in all datasets.
DOI: 10.5281/zenodo.12633909
title: Dataset for drevalpy

description: All preprocessing details can be found in https://github.com/daisybio/preprocess_drp_dataor at https://github.com/daisybio/drevalpy

News:



The pEC50s were shifted by -6 because of the code update -> now corrected.

Meta now contains the gene lists, so they don't have to be duplicated

2 new datasets: BeatAML2 and PDX_Bruna

Corrected wrong original AUC values of CTRPv2

Added MolGNet model to meta

Updated gene lists: intersection gene lists now also intersect BeatAML2 and PDX_Bruna. Reduced gene lists only contain genes contained in all datasets.
DOI: 10.15468/dl.5pvrej
title: Occurrence Download

description: A dataset containing 1289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "TaxonKey is Salmo salar"
 ]
}

 The dataset includes 1289 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033682-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3m9z44
title: Occurrence Download

description: A dataset containing 63614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ethiopia, Eritrea)",
 "OccurrenceStatus is Present",
 "PublishingOrg is 061b4f20-f241-11da-a328-b8a03c50a862"
 ]
}

 The dataset includes 63614 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033677-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wzu56
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.2_2",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetragonisca angustula"
 ]
}

 The dataset includes 161 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033683-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17611772
title: Water and sediment
DOI: 10.5281/zenodo.17611771
title: Water and sediment
DOI: 10.5281/zenodo.17611760
title: Technomancer v1.0
DOI: 10.5281/zenodo.17611759
title: Technomancer v1.0
DOI: 10.5281/zenodo.15120540
title: Iberian atmospheric river detection catalogue based on ERA5 reanalysis data

description: This dataset contains an atmospheric river (AR) catalogue created for the publication Luís et al. (2025), "Atmospheric Rivers in the Iberian Peninsula: Connection with Extratropical Fronts and Precipitation", Journal of Geophysical Research: Atmospheres, 130, e2025JD043891 (https://doi.org/10.1029/2025JD043891). The associated methodology is described in this publication.

The dataset provides information on the persistent ARs that affected the Iberian Peninsula, in the period 1979-2020, based on ERA5 reanalysis data with 6-hour time resolution and 0.25° x 0.25° spatial resolution.
DOI: 10.5281/zenodo.15120539
title: Iberian atmospheric river detection catalogue based on ERA5 reanalysis data

description: This dataset contains an atmospheric river (AR) catalogue created for the publication Luís et al. (2025), "Atmospheric Rivers in the Iberian Peninsula: Connection with Extratropical Fronts and Precipitation", Journal of Geophysical Research: Atmospheres, 130, e2025JD043891 (https://doi.org/10.1029/2025JD043891). The associated methodology is described in this publication.

The dataset provides information on the persistent ARs that affected the Iberian Peninsula, in the period 1979-2020, based on ERA5 reanalysis data with 6-hour time resolution and 0.25° x 0.25° spatial resolution.
DOI: 10.15468/dl.8z3hpm
title: Occurrence Download

description: A dataset containing 2376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "StateProvince is Antioquia",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 2376 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033684-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17611764
title: Modelo möbiusiano espectral-soliton de cronopercepción
DOI: 10.5281/zenodo.17611763
title: Modelo möbiusiano espectral-soliton de cronopercepción
DOI: 10.15468/dl.cdz9rw
title: Occurrence Download

description: A dataset containing 3836184 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "Geometry POLYGON((-95.03135 13.8122,-89.58993 13.8122,-89.58993 18.46501,-95.03135 18.46501,-95.03135 13.8122))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3836184 records from 1166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033656-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9ks6w
title: Occurrence Download

description: A dataset containing 2334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Leopardus guttulus, Herpailurus yagouaroundi)"
 ]
}

 The dataset includes 2334 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008311-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9bcaev
title: Occurrence Download

description: A dataset containing 73569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gobiomorphus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 73569 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008277-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ea5utw
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spondylurus lineolatus"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008312-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18294156
title: Supporting data for 'A data-driven approach to identifying and evaluating connectivity-based neural correlates of conscious visual perception'

description: This Zenodo repository contains all intermediate empirical data needed to reproduce analyses in our manuscript, 'A data-driven approach to identifying and evaluating connectivity-based neural correlates of conscious visual perception'. All analysis code can be found in the corresponding GitHub repository. To use our analysis code with this data, after cloning the repo, please be sure to unzip the compressed folders 'empirical.zip' and 'model.zip' within the 'data/' folder in your cloned repository (such that they become MEG_functional_connectivity/data/empirical/ and MEG_functional_connectivity/data/model/).

All original data was obtained from the COGITATE Consortium as part of their open data release from their adversarial collaboration initiative. Relevant links for the Consortium and their works:



Data publication link: https://doi.org/10.17617/1.WQA3-WK71

Adversarial collaboration publication: https://www.nature.com/articles/s41586-025-08888-1
DOI: 10.5281/zenodo.15315237
title: Supporting data for 'A data-driven approach to identifying and evaluating connectivity-based neural correlates of conscious visual perception'

description: This Zenodo repository contains all intermediate empirical data needed to reproduce analyses in our manuscript, 'A data-driven approach to identifying and evaluating connectivity-based neural correlates of conscious visual perception'. All analysis code can be found in the corresponding GitHub repository. To use our analysis code with this data, after cloning the repo, please be sure to unzip the compressed folders 'empirical.zip' and 'model.zip' within the 'data/' folder in your cloned repository (such that they become MEG_functional_connectivity/data/empirical/ and MEG_functional_connectivity/data/model/).

All original data was obtained from the COGITATE Consortium as part of their open data release from their adversarial collaboration initiative. Relevant links for the Consortium and their works:



Data publication link: https://doi.org/10.17617/1.WQA3-WK71

Adversarial collaboration publication: https://www.nature.com/articles/s41586-025-08888-1
DOI: 10.15468/dl.d29wqd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nirarathamnos asarifolius",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008315-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jd242v
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 1954"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008314-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14597516
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18356429
title: weecology/EvergladesWadingBird: 3.1.1

description: v3.1.1
DOI: 10.5281/zenodo.18344136
title: SINAPI Dataset

description: This dataset is composed of a set of SINAPI spreadsheets.

Each spreadsheet contains a set of inputs, compositions, and composition prices, by state, with and without tax exemptions. Each spreadsheet refers to a specific month and year.

The naming pattern is as follows: SINAPI_Reference_YEAR_MONTH.xlsx

where:

YEAR = reference year of the spreadsheetMONTH = reference month

For more details, please read:

IEEE Access article (in review process)
DOI: 10.5281/zenodo.18344137
title: SINAPI Dataset

description: This dataset is composed of a set of SINAPI spreadsheets.

Each spreadsheet contains a set of inputs, compositions, and composition prices, by state, with and without tax exemptions. Each spreadsheet refers to a specific month and year.

The naming pattern is as follows: SINAPI_Reference_YEAR_MONTH.xlsx

where:

YEAR = reference year of the spreadsheetMONTH = reference month

For more details, please read:

IEEE Access article (in review process)
DOI: 10.15468/dl.uepvbw
title: Occurrence Download

description: A dataset containing 348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Niger",
 "OccurrenceStatus is Present",
 "TaxonKey is Calotropis"
 ]
}

 The dataset includes 348 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008316-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckj3kx
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "DatasetKey is International Barcode of Life project (iBOL)",
 "IsSequenced is true",
 "TaxonKey is Kappaphycus alvarezii"
 ]
}

 The dataset includes 20 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008317-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tytvfw
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nothosmyrnium japonicum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 287 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008318-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.28sdya
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbus barbus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1955",
 "Year is less than or equal to 1959"
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008319-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpu3us
title: Occurrence Download

description: A dataset containing 688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Niger",
 "OccurrenceStatus is Present",
 "TaxonKey is Maerua"
 ]
}

 The dataset includes 688 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008320-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk48yj
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Niger",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia ehrenbergiana"
 ]
}

 The dataset includes 232 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008321-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stjpx7
title: Occurrence Download

description: A dataset containing 33011 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus pardalis"
 ]
}

 The dataset includes 33011 records from 471 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008322-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.