cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh590278.07fu
title: SH590278.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142175.08fu
title: SH1142175.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142176.08fu
title: SH1142176.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142177.08fu
title: SH1142177.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh590279.07fu
title: SH590279.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh590280.07fu
title: SH590280.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142178.08fu
title: SH1142178.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142179.08fu
title: SH1142179.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.xar7bd
title: Occurrence Download

description: A dataset containing 1299188 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "PublishingOrg is dc8aab12-94a0-47ce-b188-8fe30b91bb23",
 "PublishingOrg is 2d6e0e40-2aee-11d8-aa2d-b8a03c50a862",
 "PublishingOrg is 3ead5cf3-2840-482e-bbd9-76380825be63",
 "PublishingOrg is 0510c602-bf08-4c96-af10-82da8bd3c2a3",
 "PublishingOrg is 7a070ba0-bafb-11d9-8e53-b8a03c50a862",
 "PublishingOrg is b3bf3a83-1f68-4541-a03f-330d30d567f5"
 ]
 },
 "Geometry POLYGON((6.14762 42.5358,9.54144 43.60604,10.4797 42.56732,11.70934 39.43827,10.26094 37.93026,12.90426 36.39719,15.59955 36.41136,17.76739 38.17147,18.95597 39.91466,17.83366 41.44582,16.82594 42.10886,13.12452 45.15608,16.1739 45.97749,17.9247 47.371,15.69812 48.82733,12.13764 48.54224,8.83114 47.98957,5.19273 46.92407,3.97659 43.93777,6.14762 42.5358))",
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Papilionidae",
 "TaxonKey is Lycaenidae",
 "TaxonKey is Hesperiidae",
 "TaxonKey is Pieridae",
 "TaxonKey is Nymphalidae",
 "TaxonKey is Riodinidae"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1299188 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007314-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xygaut
title: Occurrence Download

description: A dataset containing 88733 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 88733 records from 470 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006539-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nypwbf
title: Occurrence Download

description: A dataset containing 2268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Aleuria aurantia (Pers.) Fuckel"
 ]
}

 The dataset includes 2268 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020490-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2m6x4
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cerastes gasperettii Leviton & Anderson, 1967"
 ]
}

 The dataset includes 46 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006539-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw7f2c
title: Occurrence Download

description: A dataset containing 3203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rhyacionia buoliana (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 3203 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031551-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l7qati
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "StateProvince is misiones",
 "TaxonKey is Araceae"
 ]
}

 The dataset includes 183 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006539-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqgfwr
title: Occurrence Download

description: A dataset containing 875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Caracterización biológica de la ventana de biodiversidad Montes de María, Municipio de Colosó, Sucre, Colombia"
 ]
}

 The dataset includes 875 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038523-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zres7g
title: Occurrence Download

description: A dataset containing 96405 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ibaraki Nature Museum, Vascular Plants collection"
 ]
}

 The dataset includes 96405 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005681-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f2mz4f
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassavola flagellaris Barb.Rodr.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006540-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehejrv
title: Occurrence Download

description: A dataset containing 4216 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plant specimens of Toyota City Nature Sanctuary"
 ]
}

 The dataset includes 4216 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005683-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv8m8j
title: Occurrence Download

description: A dataset containing 2776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Geomys breviceps Baird, 1855"
 ]
}

 The dataset includes 2776 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031533-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khtpt9
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Molossidae",
 "Country is Liberia",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-12.67 4.27,-12.67 8.65,-5.75 8.65,-5.75 4.27,-12.67 4.27))"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006540-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kasmpr
title: Occurrence Download

description: A dataset containing 1400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Venezuela (Bolivarian Republic of)",
 "TaxonKey is Zygodontomys brevicauda (J.A.Allen & Chapman, 1893)"
 ]
}

 The dataset includes 1400 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031536-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ushr3v
title: Occurrence Download

description: A dataset containing 1028 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picumnus temminckii Lafresnaye, 1845"
 ]
}

 The dataset includes 1028 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006540-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jd99ey
title: Occurrence Download

description: A dataset containing 142068 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cervus elaphus Linnaeus, 1758"
 ]
}

 The dataset includes 142068 records from 543 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008981-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oxhxbe
title: Occurrence Download

description: A dataset containing 4244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phytolacca L.",
 {
 "or" : [
 "Country is Uruguay",
 "Country is Chile",
 "Country is Paraguay",
 "Country is Colombia",
 "Country is Bolivia (Plurinational State of)",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Brazil",
 "Country is Argentina",
 "Country is Guyana",
 "Country is Peru",
 "Country is Ecuador",
 "Country is French Guiana",
 "Country is Suriname"
 ]
 }
 ]
}

 The dataset includes 4244 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006540-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tvfupw
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella miniatospora (Dalzell) Baker"
 ]
}

 The dataset includes 12 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105124-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhqxzf
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciaphila corallophyton K.Schum. & Schltr."
 ]
}

 The dataset includes 42 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105123-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25551849
title: DiseaseGene.db

description: Relationship between diseases in the disease ontology with candidate genes.Database adapted to the DisGeNET database
DOI: 10.6084/m9.figshare.25551849.v1
title: DiseaseGene.db

description: Relationship between diseases in the disease ontology with candidate genes.Database adapted to the DisGeNET database
DOI: 10.15468/dl.vy87kr
title: Occurrence Download

description: A dataset containing 3874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carassius cuvieri Temminck & Schlegel, 1846"
 ]
}

 The dataset includes 3874 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105125-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szqjxt
title: Occurrence Download

description: A dataset containing 574 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus rilstonei W.P.C.Barton & Ridd."
 ]
}

 The dataset includes 574 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105127-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65f8m4
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sandersonia aurantiaca Hook."
 ]
}

 The dataset includes 219 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105126-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10602822
title: Tianmouc dataset

description: The 'Fig3_tianmouc_test_data.tar.gz" is the two data used in characterization of Tianmouc, including the lightning capture and robustness to flicker.

The "Fig4_tianmouc_evaluation_data.tar.gz" is the data used in autonomous driving demo.

The reader can use our published code to read and visualize the data.

Please find the code for reading the data at https://github.com/Tianmouc/N_pub_code or doi.org/10.5281/zenodo.10775253

 

-------------------------------------------

update on 2024.3.18

We apologize for our oversight, here are some changes to the "algorithm_sum.xlsx".

The index referring to Figure 4 in the first column "Sample" should be Fig 4a alignment->Fig 4b Flash->Fig 4c Tunnel->Fig 4d OOD->Fig 4e Night; 

The results of "Fig 4b Flash" is modified to the following table:




Fig 4b Flash
13.86s, evaluation gap:0.33s, 42 COP and 1050 AOP
AOP
0.458
0.275
0.372
0.212


 
 
COP
0.784
0.143
0.416
0.305


 
 
CVP
0.711
0.214
0.418
0.241
DOI: 10.5281/zenodo.10602821
title: Tianmouc dataset

description: The 'Fig3_tianmouc_test_data.tar.gz" is the two data used in characterization of Tianmouc, including the lightning capture and robustness to flicker.

The "Fig4_tianmouc_evaluation_data.tar.gz" is the data used in autonomous driving demo.

The reader can use our published code to read and visualize the data.

Please find the code for reading the data at https://github.com/Tianmouc/N_pub_code or doi.org/10.5281/zenodo.10775253

 

-------------------------------------------

update on 2024.3.18

We apologize for our oversight, here are some changes to the "algorithm_sum.xlsx".

The index referring to Figure 4 in the first column "Sample" should be Fig 4a alignment->Fig 4b Flash->Fig 4c Tunnel->Fig 4d OOD->Fig 4e Night; 

The results of "Fig 4b Flash" is modified to the following table:




Fig 4b Flash
13.86s, evaluation gap:0.33s, 42 COP and 1050 AOP
AOP
0.458
0.275
0.372
0.212


 
 
COP
0.784
0.143
0.416
0.305


 
 
CVP
0.711
0.214
0.418
0.241
DOI: 10.15468/dl.xhav3k
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciaphila corniculata Becc."
 ]
}

 The dataset includes 14 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105130-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.