cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14795414.v1
title: Additional file 1 of Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer

description: Additional file 1: Table S1. Absolute quantitative values of 116 compounds.
DOI: 10.6084/m9.figshare.14795408.v1
title: Additional file 2 of Doxorubicin induces an alarmin-like TLR4-dependent autocrine/paracrine action of Nucleophosmin in human cardiac mesenchymal progenitor cells

description: Additional file 2. Raw data relative to all figure graphs.
DOI: 10.6084/m9.figshare.14794971
title: Thrips on Honey Bees Data [17June2021].xlsx

description: Raw data about observations of thrips on honey bees<br>
DOI: 10.5281/zenodo.4965543
title: The X-ray computed tomography of the sandstone sample during hydraulic fracturing experiments

description: Hydraulic fracturing plays a key role in the field of unconventional energy extraction.The real formation stress state and hydraulic fracturing process can be simulated in the laboratory by applying triaxial compression and injection pressure to small-scale rock samples for hydraulic fracturing experiments. X-ray computed tomography (CT) is one of the most effective nondestructive methods for elucidating the internal structure of opaque materials. We carried out in situ X-ray imaging of the rock sample during the hydraulic fracturing experiment process. The data we uploaded can be divided into two main parts. The first part is the confining, axial and water injection pressures recorded during the hydraulic fracturing experiment. The second part is the CT scans of the rock sample during the hydraulic fracturing experiment.
DOI: 10.5281/zenodo.4965542
title: The X-ray computed tomography of the sandstone sample during hydraulic fracturing experiments

description: Hydraulic fracturing plays a key role in the field of unconventional energy extraction.The real formation stress state and hydraulic fracturing process can be simulated in the laboratory by applying triaxial compression and injection pressure to small-scale rock samples for hydraulic fracturing experiments. X-ray computed tomography (CT) is one of the most effective nondestructive methods for elucidating the internal structure of opaque materials. We carried out in situ X-ray imaging of the rock sample during the hydraulic fracturing experiment process. The data we uploaded can be divided into two main parts. The first part is the confining, axial and water injection pressures recorded during the hydraulic fracturing experiment. The second part is the CT scans of the rock sample during the hydraulic fracturing experiment.
DOI: 10.5281/zenodo.4970724
title: Data for 'Phenotypic plasticity and genetic variation in leaf ecophysiological traits of Yushania niitakayamensis (Bambusoideae; Poaceae) in contrasting light environments'

description: This is the Data for the article entitled 'Phenotypic plasticity and genetic variation in leaf ecophysiological traits of Yushania niitakayamensis (Bambusoideae; Poaceae) in contrasting light environments' submitted to 'Journal of Plant Research'
DOI: 10.6084/m9.figshare.14795285.v1
title: Additional file 1 of Microbiological quality of non-sterile pharmaceuticals in Egypt

description: Additional file 1.
DOI: 10.6084/m9.figshare.14795260.v1
title: Additional file 7 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file7. Selected behavioral indicators among women, 15–24 years, grouped by HIV prevalence, in urban and rural residence, national surveys (media percent, countries), xls, 02 tables.
DOI: 10.6084/m9.figshare.14795257.v1
title: Additional file 6 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file6. Urban–rural HIV prevalence trends in adolescents by sex, 15–24 years, xls, 02 tables.
DOI: 10.6084/m9.figshare.14795251.v1
title: Additional file 5 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file5. HIV prevalence at 5–9, 10–14 and 15–19 years, xls.
DOI: 10.6084/m9.figshare.14795248.v1
title: Additional file 4 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file4. HIV Incidence at ages 15–24 by gender, xls, 04 tables and 01 figure.
DOI: 10.6084/m9.figshare.14795245.v1
title: Additional file 3 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file3. HIV prevalence 15–19-year-old girls and boys with confidence intervals, by country.
DOI: 10.6084/m9.figshare.14795242.v1
title: Additional file 2 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file2. Correlation between HIV prevalence at ages 15–19 and 15–24 by gender, xls, 02 figures for females (A) and males (B).
DOI: 10.6084/m9.figshare.14795239.v1
title: Additional file 1 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file1. National surveys with HIV testing with year of completion, xls, 33-countries table checklist.
DOI: 10.6084/m9.figshare.14795631
title: Chronotype and trait self-control distinctively predicted subjective sleep quality via sleep hygiene behaviors and bedtime media use

description: S1 Data<br>
DOI: 10.6084/m9.figshare.14795631.v1
title: Chronotype and trait self-control distinctively predicted subjective sleep quality via sleep hygiene behaviors and bedtime media use

description: S1 Data<br>
DOI: 10.6084/m9.figshare.14795164.v1
title: Additional file 3 of Intimate partner violence against adolescents and young women in sub-Saharan Africa: who is most vulnerable?

description: Additional file 3: Table S3. Attitudes towards wife beating among AYW by country and stratifiers, SSA.
DOI: 10.6084/m9.figshare.14795158.v1
title: Additional file 1 of Intimate partner violence against adolescents and young women in sub-Saharan Africa: who is most vulnerable?

description: Additional file 1: Table S1. Prevalence of IPV among AYW by country and the stratifiers, SSA.
DOI: 10.6084/m9.figshare.14795083.v1
title: Additional file 3 of Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

description: Additional File 3 Module membership and associated GO-terms for aphid, H. defensa and B. aphidicola genes.
DOI: 10.6084/m9.figshare.14795080.v1
title: Additional file 2 of Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

description: Additional file 2: Supplementary Table 1. Number of reads per organism. Number of reads in each library (‘reads processed’) and number and fraction of reads mapped to each organism by Kallisto. Column ‘tmt’ indicates treatment, i.e. uninfected (H0) or H. defensa-infected aphid hosts (infecting strains H15, H402, H76 or H85). ‘Batch’ indicates which libraries were grouped during RNA extraction and library preparation. The library that was excluded from analysis is marked with **. Read counts marked with * are most likely a result of index hopping. Supplementary Table 2. Read assignment to taxa. Fraction of reads assigned to different taxa by Kraken. Fractions were averaged over all libraries of each treatment, except for treatment H15 for which the strongly contaminated library H15R1 was listed separately from the other three libraries (H15*). Aphid hosts were uninfected (H0) or infected (infecting strains H15, H402, H76 or H85) by H. defensa. As this table contains only taxa of specific interest, the read fractions are not expected to add up to 100%. Fractions below 0.01 were not extracted from the Kraken output, which is indicated by “ 0.5 are indicated by coloured backgrounds. Supplementary Table 6. Differential expression of aphid genes (reduced model). Results of differential expression analysis comparing gene expression of aphids infected with H. defensa H15 to aphids infected with H. defensa H85. P-values adjusted for multiple testing (padj) 0.5 are indicated by coloured backgrounds. Supplementary Table 7. Differential expression of H. defensa genes (full model). Results of differential expression analysis comparing gene expression of H. defensa strains H15, H76 or H402 to H. defensa strain H85 (full model with all strains). P-values adjusted for multiple testing (padj) 0.5 are indicated by coloured backgrounds. Supplementary Table 8. Differential expression of B. aphidicola genes. Results of differential expression analysis comparing gene expression of B. aphidicola in aphid hosts infected with H. defensa (H15, H76, H85 or H402) to uninfected aphid hosts (H0). P-values adjusted for multiple testing (padj) 0.5 are indicated by coloured backgrounds. For each gene, read counts in each replicate are indicated. Supplementary Table 9. Correlation of aphid gene expression. Correlation coefficient and p-values of aphid gene modules with H. defensa titre and toxin type. Coloured: Correlation has a p-value of
DOI: 10.6084/m9.figshare.14795587
title: Additional file 6 of Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

description: Additional file 6: Supplementary Table 6. GO analysis for differentially expressed genes in all experimental groups comparisons.
DOI: 10.6084/m9.figshare.14795584
title: Additional file 5 of Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

description: Additional file 5: Supplementary Table 5. Cummulative Pc and corresponding GO analysis for 5% of transcripts with higher Pc.
DOI: 10.6084/m9.figshare.14795581
title: Additional file 4 of Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

description: Additional file 4: Supplementary Table 4. GO analysis results for genes exhibiting Pc
DOI: 10.6084/m9.figshare.14795578
title: Additional file 3 of Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

description: Additional file 3: Supplementary Table 3. Pc values for each gene derived from the comparison of NS and S groups.
DOI: 10.6084/m9.figshare.14795575
title: Additional file 2 of Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

description: Additional file 2: Supplementary Table 2. Pc values for each gene derived from the comparison of S and C groups.
DOI: 10.6084/m9.figshare.14795572
title: Additional file 1 of Transcriptomic coordination at hepatic steatosis indicates robust immune cell engagement prior to inflammation

description: Additional file 1: Supplementary Table 1. Pc values for each gene derived from the comparison of NS and C groups.
DOI: 10.5281/zenodo.4954673
title: Forensic dataset

description: This dataset is used to train/test/validate different deep learning models in the paper entitled "High-Performance Deep Learning Pipeline Predicts Individuals in Mixtures of DNA Using Sequencing Data" submitted to Briefing in Bioinformatics journal.
DOI: 10.5281/zenodo.4954672
title: Forensic dataset

description: This dataset is used to train/test/validate different deep learning models in the paper entitled "High-Performance Deep Learning Pipeline Predicts Individuals in Mixtures of DNA Using Sequencing Data" submitted to Briefing in Bioinformatics journal.
DOI: 10.6084/m9.figshare.14795557
title: Additional file 1 of Wealth-related inequalities in demand for family planning satisfied among married and unmarried adolescent girls and young women in sub-Saharan Africa

description: Additional file 1: FigureS1. Absolute difference in DFPSm between AGYW from richest and poorest households.
DOI: 10.6084/m9.figshare.14795519
title: Additional file 7 of Vertically transmitted microbiome protects eggs from fungal infection and egg failure

description: Additional file 7. Community composition data for cloacal and eggshell samples.
DOI: 10.6084/m9.figshare.14795516
title: Additional file 6 of Vertically transmitted microbiome protects eggs from fungal infection and egg failure

description: Additional file 6. Taxonomy assignments for all ASV’s.
DOI: 10.5281/zenodo.4954655
title: Breast cancer - TNBC-1st set

description: The first set of TNBC dataset used for breast cancer model training in the paper entitled "High-Performance Deep Learning Pipeline Predicts Individuals in Mixtures of DNA Using Sequencing Data" which is submitted to Briefing in Bioinformatics journal.
DOI: 10.5281/zenodo.4954654
title: Breast cancer - TNBC-1st set

description: The first set of TNBC dataset used for breast cancer model training in the paper entitled "High-Performance Deep Learning Pipeline Predicts Individuals in Mixtures of DNA Using Sequencing Data" which is submitted to Briefing in Bioinformatics journal.
DOI: 10.6084/m9.figshare.14795417
title: Additional file 2 of Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer

description: Additional file 2: Table S2. Metabolic parameters based on the 116 compounds.
DOI: 10.6084/m9.figshare.14795414
title: Additional file 1 of Metabolome analysis reveals a diversity of cancer tissues in advanced epithelial ovarian cancer

description: Additional file 1: Table S1. Absolute quantitative values of 116 compounds.
DOI: 10.6084/m9.figshare.14795408
title: Additional file 2 of Doxorubicin induces an alarmin-like TLR4-dependent autocrine/paracrine action of Nucleophosmin in human cardiac mesenchymal progenitor cells

description: Additional file 2. Raw data relative to all figure graphs.
DOI: 10.5281/zenodo.4957101
title: Breast cancer - Luminal A subtype dataset

description: This breast cancer luminal A subtype is used to train the deep learning model in the paper entitled "High-Performance Deep Learning Pipeline Predicts Individuals in Mixtures of DNA Using Sequencing Data" which is submitted to Briefing in Bioinformatics journal.
DOI: 10.5281/zenodo.4957100
title: Breast cancer - Luminal A subtype dataset

description: This breast cancer luminal A subtype is used to train the deep learning model in the paper entitled "High-Performance Deep Learning Pipeline Predicts Individuals in Mixtures of DNA Using Sequencing Data" which is submitted to Briefing in Bioinformatics journal.
DOI: 10.6084/m9.figshare.14795285
title: Additional file 1 of Microbiological quality of non-sterile pharmaceuticals in Egypt

description: Additional file 1.
DOI: 10.6084/m9.figshare.14795260
title: Additional file 7 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file7. Selected behavioral indicators among women, 15–24 years, grouped by HIV prevalence, in urban and rural residence, national surveys (media percent, countries), xls, 02 tables.
DOI: 10.6084/m9.figshare.14795257
title: Additional file 6 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file6. Urban–rural HIV prevalence trends in adolescents by sex, 15–24 years, xls, 02 tables.
DOI: 10.6084/m9.figshare.14795251
title: Additional file 5 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file5. HIV prevalence at 5–9, 10–14 and 15–19 years, xls.
DOI: 10.6084/m9.figshare.14795248
title: Additional file 4 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file4. HIV Incidence at ages 15–24 by gender, xls, 04 tables and 01 figure.
DOI: 10.6084/m9.figshare.14795245
title: Additional file 3 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file3. HIV prevalence 15–19-year-old girls and boys with confidence intervals, by country.
DOI: 10.6084/m9.figshare.14795242
title: Additional file 2 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file2. Correlation between HIV prevalence at ages 15–19 and 15–24 by gender, xls, 02 figures for females (A) and males (B).
DOI: 10.6084/m9.figshare.14795239
title: Additional file 1 of HIV trends and disparities by gender and urban–rural residence among adolescents in sub-Saharan Africa

description: Additional file1. National surveys with HIV testing with year of completion, xls, 33-countries table checklist.
DOI: 10.6084/m9.figshare.14795164
title: Additional file 3 of Intimate partner violence against adolescents and young women in sub-Saharan Africa: who is most vulnerable?

description: Additional file 3: Table S3. Attitudes towards wife beating among AYW by country and stratifiers, SSA.
DOI: 10.6084/m9.figshare.14795158
title: Additional file 1 of Intimate partner violence against adolescents and young women in sub-Saharan Africa: who is most vulnerable?

description: Additional file 1: Table S1. Prevalence of IPV among AYW by country and the stratifiers, SSA.
DOI: 10.6084/m9.figshare.14795083
title: Additional file 3 of Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

description: Additional File 3 Module membership and associated GO-terms for aphid, H. defensa and B. aphidicola genes.
DOI: 10.6084/m9.figshare.14795080
title: Additional file 2 of Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

description: Additional file 2: Supplementary Table 1. Number of reads per organism. Number of reads in each library (‘reads processed’) and number and fraction of reads mapped to each organism by Kallisto. Column ‘tmt’ indicates treatment, i.e. uninfected (H0) or H. defensa-infected aphid hosts (infecting strains H15, H402, H76 or H85). ‘Batch’ indicates which libraries were grouped during RNA extraction and library preparation. The library that was excluded from analysis is marked with **. Read counts marked with * are most likely a result of index hopping. Supplementary Table 2. Read assignment to taxa. Fraction of reads assigned to different taxa by Kraken. Fractions were averaged over all libraries of each treatment, except for treatment H15 for which the strongly contaminated library H15R1 was listed separately from the other three libraries (H15*). Aphid hosts were uninfected (H0) or infected (infecting strains H15, H402, H76 or H85) by H. defensa. As this table contains only taxa of specific interest, the read fractions are not expected to add up to 100%. Fractions below 0.01 were not extracted from the Kraken output, which is indicated by “ 0.5 are indicated by coloured backgrounds. Supplementary Table 6. Differential expression of aphid genes (reduced model). Results of differential expression analysis comparing gene expression of aphids infected with H. defensa H15 to aphids infected with H. defensa H85. P-values adjusted for multiple testing (padj) 0.5 are indicated by coloured backgrounds. Supplementary Table 7. Differential expression of H. defensa genes (full model). Results of differential expression analysis comparing gene expression of H. defensa strains H15, H76 or H402 to H. defensa strain H85 (full model with all strains). P-values adjusted for multiple testing (padj) 0.5 are indicated by coloured backgrounds. Supplementary Table 8. Differential expression of B. aphidicola genes. Results of differential expression analysis comparing gene expression of B. aphidicola in aphid hosts infected with H. defensa (H15, H76, H85 or H402) to uninfected aphid hosts (H0). P-values adjusted for multiple testing (padj) 0.5 are indicated by coloured backgrounds. For each gene, read counts in each replicate are indicated. Supplementary Table 9. Correlation of aphid gene expression. Correlation coefficient and p-values of aphid gene modules with H. defensa titre and toxin type. Coloured: Correlation has a p-value of
DOI: 10.5281/zenodo.4971313
title: An artificial intelligence nanopore platform for SARS-CoV-2 virus detection

description: Ionic current-time profiles of nanoparticles, corona viruses, and clinical specimens
DOI: 10.5281/zenodo.4529370
title: An artificial intelligence nanopore platform for SARS-CoV-2 virus detection

description: Ionic current-time profiles of nanoparticles, corona viruses, and clinical specimens
DOI: 10.3886/e113365v1-89440
title: Replication data for: I Take Care of My Own: A Field Study on How Leadership Handles Conflict between Individual and Collective Incentives

description: In most collective actions, individuals' incentives are not perfectly aligned with the goals of the group/team they are part of. We investigate how individual specific incentives affect both individuals and team leaders' strategies in a natural setting. We use a discontinuity in individual rewards in batsmen scoring in cricket to identify the causal effect of such incentives on behavior. We find that batsmen react to the presence of individual-specific incentives by adopting strategies that may be suboptimal at the team level. More surprisingly, we also find that team captains react to these individual incentives by adopting suboptimal strategies at the team level, which may bring large benefits to the individual players. These results suggest a complex interplay of individual and team incentives which we conjecture may arise in repeated team interactions.
DOI: 10.6084/m9.figshare.14796306
title: Supplementary Material for: Transcutaneous versus Total Serum Bilirubin Measurements in Preterm Infants

description: <b><i>Introduction:</i></b> Transcutaneous bilirubin (TcB) measurement offers a noninvasive approach for bilirubin screening; however, its accuracy in preterm infants is unclear. This study determined the agreement between TcB and total serum bilirubin (TSB) among preterm infants. <b><i>Methods:</i></b> A multisite prospective cohort study was conducted at 3 NICUs in Ontario, Canada, September 2016 to June 2018. Among 296 preterm infants born at 24<sup>0/7</sup> to 35<sup>6/7</sup> weeks, 856 TcB levels were taken at the forehead, sternum, and before and after the initiation of phototherapy with TSB measurements. Bland-Altman plots and 95% limits of agreement (LOA) expressed agreement between TcB and TSB. <b><i>Results:</i></b> The overall mean TcB-TSB difference was −24.5 μmol/L (95% LOA −103.3 to 54.3), 1.6 μmol/L (95% LOA −73.4 to 76.5) before phototherapy, and −31.1 μmol/L (95% LOA −105.5 to 43.4) after the initiation of phototherapy. The overall mean TcB-TSB difference was −15.2 μmol/L (95% LOA −86.8 to 56.3) at the forehead and −24.4 μmol/L (95% LOA −112.9 to 64.0) at the sternum. The mean TcB-TSB difference was −31.4 μmol/L (95% LOA −95.3 to 32.4) among infants born 24–28 weeks, −25.5 μmol/L (95% LOA −102.7 to 51.8) at 29–32 weeks, and −15.9 μmol/L (95% LOA −107.4 to 75.6) at 33–35 weeks. Measures did not differ by maternal ethnicity. <b><i>Conclusion:</i></b> Among preterm infants, TcB may offer a noninvasive, immediate approach to screening for hyperbilirubinemia with more careful use in preterm infants born at &lt;33 weeks’ gestation, as TcB approaches treatment thresholds. Its underestimation of TSB after the initiation of phototherapy warrants the use of TSB for clinical decision-making after the initiation of phototherapy.
DOI: 10.6084/m9.figshare.14796339
title: abstracts-preds.zip

description: 776070 computer science abstracts extracted from the Semantic Scholar Open Research Corpus (S2ORC) based on which the faceted Query by Example test collection CSFCube was built. Dataset release accompanying: https://github.com/iesl/CSFCube/<br>