cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/5m1csy
title: Protected Areas - Global Register of Introduced and Invasive Species - La Digue island, Seychelles

description: The Protected Areas -Global Register of Introduced and Invasive Species (PA-GRIIS) presents validated checklists of introduced (alien) and invasive alien species at a site level. The primary intention of PA-GRIIS is to provide checklists of introduced (alien) and invasive species present on designated protected areas (such as National Parks, Ramsar sites- Wetlands of International importance, World Heritage Sites (natural and mixed), Marine protected areas etc.) and other areas of biodiversity significance (such as Important Plant Areas (IPA), Important Bird Areas (IBA) etc.), as well as buffer zones around these areas. Areas surrounding protected areas and other areas of high biodiversity significance can serve as an invasion source of alien and invasive species propagules. The establishment of buffer zones and the management of alien and invasive species within these areas is a key management strategy in the prevention of introduction and control/management of biological invasions. In the case of islands buffer zones. Checklists are living entities, especially for biological invasions given the growing nature of the problem. PA -GRIIS checklists are based on the GRIIS published methodology (Pagad et al 2018) and supported by the Integrated Publishing Tool of the Global Biodiversity Information Infrastructure (GBIF) that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the PA -GRIIS project will present close to 100 exemplar checklists of introduced (alien) and invasive species in a selection of protected areas and other areas of biodiversity significance This annotated checklist is of introduced (alien) and invasive alien species known to occur on La Digue island, an Important Bird Area (IBA) in Seychelles
DOI: 10.15468/lquucw
title: New species of the Scarabaeus subgenus Scarabaeolus Balthasar, with a review of the subgenus (Scarabaeidae: Scarabaeinae: Scarabaeini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zidek, Jiri, Pokorný, Svatopluk (2018): New species of the Scarabaeus subgenus Scarabaeolus Balthasar, with a review of the subgenus (Scarabaeidae: Scarabaeinae: Scarabaeini). Insecta Mundi 611: 1-35, DOI: http://doi.org/10.5281/zenodo.3726987
DOI: 10.14457/cu.the.2012.1799
title: การคัดเลือกตัวแปรและการประมาณค่าสัมประสิทธิ์แบบเบย์เชิงประจักษ์สำหรับตัวแบบ Cox’s proportional hazard ที่ข้อมูลมีมิติสูง
DOI: 10.14457/cu.the.2012.1800
title: การพัฒนารูปแบบการมีส่วนร่วมของชุมชนในการจัดการศึกษานอกระบบและการศึกษาตามอัธยาศัยของ กศน.ตำบล : การประยุกต์ใช้การวิเคราะห์องค์ประกอบเชิงยืนยันและการวิจัยปฏิบัติการ
DOI: 10.14457/cu.the.2012.1801
title: การนำเสนอแนวทางพัฒนาทักษะชีวิตของเยาวชนในกรุงเทพมหานคร
DOI: 10.14457/cu.the.2012.1802
title: กลยุทธ์การบริหารสู่ความเป็นเลิศของศูนย์แพทยศาสตรศึกษาชั้นคลินิก กระทรวงสาธารณสุข
DOI: 10.5281/zenodo.3727213
title: Gradients1-KOK1606-HPLC_2020-03-23_v1.0

description: Cruise: Gradients 1, KOK1606 Project Name: Simons Foundation, Gradients NPSG Method: Samples were processed to detect and quantify phytoplankton pigments using a modified version of the high-performance liquid chromatography (HPLC) method of Wright et al. (1991) as described by Bidigare et al. (2005). Sample water was concentrated onto Whatman GF/F filters (0.7 µm nominal pore size) and stored at -80°C until analysis. Filters were extracted in 100% acetone for 24 h at 4°C. Extracts were processed in reverse-phase on a 250 mm C18 column using a Waters separations module and photodiode detector array. Empower chromatography software was used for integration and pigment quantification. The instrument was calibrated using chlorophyll a from Anacystis nidulans (Sigma USA) and mixed pigment standards were obtained from DHI in Denmark.
DOI: 10.5281/zenodo.3726879
title: Dataset supporting "High-energy surf zone currents and headland rips at a geologically-constrained mesotidal beach", by Mouragues et al., submitted to JGR-Oceans

description: This dataset comprises three Matlab structure containing drifter raw measurements during the four days of deployment (JGR_Drifters.mat), 5-min time-averaged and depth-averaged of velocity measured by the four ADCPs during the whole field experiment (JGR_Velocities_ADCP.mat) and the offshore wave conditions measured by the wave buoy (JGR_Waves_Offshore.mat).
DOI: 10.5281/zenodo.3726880
title: Dataset supporting "High-energy surf zone currents and headland rips at a geologically-constrained mesotidal beach", by Mouragues et al., submitted to JGR-Oceans

description: This dataset comprises three Matlab structure containing drifter raw measurements during the four days of deployment (JGR_Drifters.mat), 5-min time-averaged and depth-averaged of velocity measured by the four ADCPs during the whole field experiment (JGR_Velocities_ADCP.mat) and the offshore wave conditions measured by the wave buoy (JGR_Waves_Offshore.mat).
DOI: 10.15468/jfruku
title: Protected Areas - Global Register of Introduced and Invasive Species - Mare-Aux-Cochons, Seychelles

description: The Protected Areas -Global Register of Introduced and Invasive Species (PA-GRIIS) presents validated checklists of introduced (alien) and invasive alien species at a site level. The primary intention of PA-GRIIS is to provide checklists of introduced (alien) and invasive species present on designated protected areas (such as National Parks, Ramsar sites- Wetlands of International importance, World Heritage Sites (natural and mixed), Marine protected areas etc.) and other areas of biodiversity significance (such as Important Plant Areas (IPA), Important Bird Areas (IBA) etc.), as well as buffer zones around these areas. Areas surrounding protected areas and other areas of high biodiversity significance can serve as an invasion source of alien and invasive species propagules. The establishment of buffer zones and the management of alien and invasive species within these areas is a key management strategy in the prevention of introduction and control/management of biological invasions. In the case of islands buffer zones. Checklists are living entities, especially for biological invasions given the growing nature of the problem. PA -GRIIS checklists are based on the GRIIS published methodology (Pagad et al 2018) and supported by the Integrated Publishing Tool of the Global Biodiversity Information Infrastructure (GBIF) that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the PA -GRIIS project will present close to 100 exemplar checklists of introduced (alien) and invasive species in a selection of protected areas and other areas of biodiversity significance This annotated checklist is of introduced (alien) and invasive alien species known to occur on Mare-Aux-Cochons, Seychelles a Ramsar Site, Wetland of International Importance
DOI: 10.5281/zenodo.3727033
title: Compendium of Energetic Materials Data

description: A collection of names, elemental formulas, SMILES strings, and CAS numbers for openly published energetic molecules. More entries and types of data may be added to this compendium in future versions. We provide this data so that it may be used for research and cited (with zenodo URL and DOI) in papers.
DOI: 10.5281/zenodo.3725622
title: Raw data relative to: "Distinct Expression of Inflammatory Features in T Helper 17 Cells from Multiple Sclerosis Patients"

description: <strong>Introduction</strong> Multiple sclerosis (MS) is a chronic inflammatory disease of the central nervous system (CNS). T helper (Th) 17 lymphocytes play a role in the pathogenesis of MS. Indeed, Th17 cells are abundant in the cerebrospinal fluid and peripheral blood of MS patients and promote pathogenesis in the mouse model of MS. To gain insight into the function of Th17 cells in MS, we tested whether Th17 cells polarized from naïve CD4 T cells of healthy donors and MS patients display different features <strong>Methods</strong> We analysed several parameters that typify the Th17 profile during the differentiation process of naïve CD4 T cells obtained from relapsing-remitting (RR)-MS patients and healthy donors (HD), such as expression of surface receptors by flow cytometry. <strong>Results</strong> The analysis revealed that expression of IL-1R1 is significantly increased in Th17 cells derived from MS patients compared to healthy donor-derived cells. Interestingly, IL-1R1 expression is also increased in Th17 cells circulating in the blood of MS patients compared to healthy donors. Since IL-1R1 play a crucial role in the activation of immune cells, our data indicate that high expression of these molecules in Th17 cells from MS patients could be related to their high inflammatory status.
DOI: 10.5281/zenodo.3725623
title: Raw data relative to: "Distinct Expression of Inflammatory Features in T Helper 17 Cells from Multiple Sclerosis Patients"

description: <strong>Introduction</strong> Multiple sclerosis (MS) is a chronic inflammatory disease of the central nervous system (CNS). T helper (Th) 17 lymphocytes play a role in the pathogenesis of MS. Indeed, Th17 cells are abundant in the cerebrospinal fluid and peripheral blood of MS patients and promote pathogenesis in the mouse model of MS. To gain insight into the function of Th17 cells in MS, we tested whether Th17 cells polarized from naïve CD4 T cells of healthy donors and MS patients display different features <strong>Methods</strong> We analysed several parameters that typify the Th17 profile during the differentiation process of naïve CD4 T cells obtained from relapsing-remitting (RR)-MS patients and healthy donors (HD), such as expression of surface receptors by flow cytometry. <strong>Results</strong> The analysis revealed that expression of IL-1R1 is significantly increased in Th17 cells derived from MS patients compared to healthy donor-derived cells. Interestingly, IL-1R1 expression is also increased in Th17 cells circulating in the blood of MS patients compared to healthy donors. Since IL-1R1 play a crucial role in the activation of immune cells, our data indicate that high expression of these molecules in Th17 cells from MS patients could be related to their high inflammatory status.
DOI: 10.5281/zenodo.3727032
title: Compendium of Energetic Materials Data

description: A collection of names, elemental formulas, SMILES strings, and CAS numbers for openly published energetic molecules. More entries and types of data may be added to this compendium in future versions. We provide this data so that it may be used for research and cited (with zenodo URL and DOI) in papers.
DOI: 10.15468/artzy8
title: Protected Areas - Global Register of Introduced and Invasive Species - Morne-Seychellois National Park, Seychelles

description: The Protected Areas -Global Register of Introduced and Invasive Species (PA-GRIIS) presents validated checklists of introduced (alien) and invasive alien species at a site level. The primary intention of PA-GRIIS is to provide checklists of introduced (alien) and invasive species present on designated protected areas (such as National Parks, Ramsar sites- Wetlands of International importance, World Heritage Sites (natural and mixed), Marine protected areas etc.) and other areas of biodiversity significance (such as Important Plant Areas (IPA), Important Bird Areas (IBA) etc.), as well as buffer zones around these areas. Areas surrounding protected areas and other areas of high biodiversity significance can serve as an invasion source of alien and invasive species propagules. The establishment of buffer zones and the management of alien and invasive species within these areas is a key management strategy in the prevention of introduction and control/management of biological invasions. In the case of islands buffer zones. Checklists are living entities, especially for biological invasions given the growing nature of the problem. PA -GRIIS checklists are based on the GRIIS published methodology (Pagad et al 2018) and supported by the Integrated Publishing Tool of the Global Biodiversity Information Infrastructure (GBIF) that jointly enable ongoing improvements and updates to expand their taxonomic coverage and completeness. Phase 1 of the PA -GRIIS project will present close to 100 exemplar checklists of introduced (alien) and invasive species in a selection of protected areas and other areas of biodiversity significance This annotated checklist is of introduced (alien) and invasive alien species known to occur on the nationally designated Morne-Seychellois National Park, Seychelles
DOI: 10.21227/gz79-yt60
title: Deep Xi Training Set

description: Clean speech: Noise: Note that the clean-speech and noise recordings used for this training set are separate from those used in the following test sets: Deep Xi Test Set (), Test Set from (), and the DEMAND Voicebank test set ().
DOI: 10.5281/zenodo.3725642
title: Raw data related to: "Resiquimod-Mediated Activation of Plasmacytoid Dendritic Cells Is Amplified in Multiple Sclerosis"

description: <strong>Introduction</strong> Multiple sclerosis (MS) is a chronic inflammatory autoimmune disease of the central nervous system. The cause of multiple sclerosis is unknown but there are several evidences that associate the genetic basis of the disease with environmental causes. An important association between viral infection and development of MS is clearly demonstrated. Viruses have a strong impact on innate immune cells. In particular, myeloid dendritic cells (mDCs) and plasmacytoid dendritic cells (pDCs), are able to respond to viruses and to activate the adaptive immune response. <strong>Methods</strong> In this study we mimic viral infection using synthetic single-strand RNA, Resiquimod, and we compared the response of both DC subsets derived from healthy donors and MS patients by characterizing the expression of costimulatory molecules on the DC surface. <strong>Results</strong> We found that pDCs from MS patients express higher levels of OX40-L. Moreover, we found that blood cells from MS patients and healthy donors upon Resiquimod-stimulation are enriched in a subpopulation of pDCs, characterized by a high amount of costimulatory molecules. <strong>Conclusion</strong> Overall, these results indicate that activation of pDCs is enhanced in MS, likely due to a latent viral infection, and that costimulatory molecules expressed on pDCs could mediate a protective response against the viral trigger of autoimmunity.
DOI: 10.5281/zenodo.3725643
title: Raw data related to: "Resiquimod-Mediated Activation of Plasmacytoid Dendritic Cells Is Amplified in Multiple Sclerosis"

description: <strong>Introduction</strong> Multiple sclerosis (MS) is a chronic inflammatory autoimmune disease of the central nervous system. The cause of multiple sclerosis is unknown but there are several evidences that associate the genetic basis of the disease with environmental causes. An important association between viral infection and development of MS is clearly demonstrated. Viruses have a strong impact on innate immune cells. In particular, myeloid dendritic cells (mDCs) and plasmacytoid dendritic cells (pDCs), are able to respond to viruses and to activate the adaptive immune response. <strong>Methods</strong> In this study we mimic viral infection using synthetic single-strand RNA, Resiquimod, and we compared the response of both DC subsets derived from healthy donors and MS patients by characterizing the expression of costimulatory molecules on the DC surface. <strong>Results</strong> We found that pDCs from MS patients express higher levels of OX40-L. Moreover, we found that blood cells from MS patients and healthy donors upon Resiquimod-stimulation are enriched in a subpopulation of pDCs, characterized by a high amount of costimulatory molecules. <strong>Conclusion</strong> Overall, these results indicate that activation of pDCs is enhanced in MS, likely due to a latent viral infection, and that costimulatory molecules expressed on pDCs could mediate a protective response against the viral trigger of autoimmunity.
DOI: 10.15468/j0bk66
title: The Diptera of Panama. I. Annotated catalog of the Tipulomorpha of Panama

description: This dataset contains the digitized treatments in Plazi based on the original journal article Armitage, Brian J., Ríos González, Tomás A. (2019): The Diptera of Panama. I. Annotated catalog of the Tipulomorpha of Panama. Insecta Mundi 712: 1-30, DOI: http://doi.org/10.5281/zenodo.3727017
DOI: 10.5281/zenodo.3727316
title: Yeast 1-hybrid screens for upstream regulators of A. thaliana AGO1, AGO7, and AGO10: raw data and R code

description: These files document a yeast 1-hybrid experiments and associated analyses described in a paper by Hoyer et al. (2019): https://doi.org/10.1002/pld3.102 This release corresponds to the fourth version of the Zenodo record. None of the code or data files changed from record 1472704 (the version linked in the paper); I simply added a link to the Plant Direct paper to the ReadMe file.
DOI: 10.17632/t4wsg6n2jv.1
title: Chain code compression results using PMTFT

description: Data used in the manuscript (INS-D-18-3241) entitled Can Burrows-Wheeler Transform be replaced in chain code compression?, which was submitted to journal Information Sciences.
DOI: 10.21227/474k-2t65
title: Deep Xi Training Set

description: The clean-speech and noise recordings used to train Deep Xi (https://github.com/anicolson/DeepXi). A validation set is also included. Clean speech:The clean-speech recordings are from the test-clean-100 set of Librispeech (http://www.openslr.org/12/) and from the CSTR VCTK corpus (https://homepages.inf.ed.ac.uk/jyamagis/page3/page58/page58.html). Noise:The noise recordings are from the Environmental Background Noise dataset (https://personal.utdallas.edu/~nxk019000/VAD-dataset/), the Nonspeech dataset (http://web.cse.ohio-state.edu/pnl/corpus/HuNonspeech/HuCorpus.html), the QUT-NOISE dataset (https://research.qut.edu.au/saivt/databases/qut-noise-databases-and-protocols/), multiple Freesound packs (https://freesound.org/), the noise set of the MUSAN corpus (https://www.openslr.org/17/), the RSG-10 noise database (http://www.steeneken.nl/wp-content/uploads/2014/04/RSG-10_Noise-data-base.pdf) and the Urban Sound dataset (http://www.justinsalamon.com/uploads/4/3/9/4/4394963/salamon_urbansound_acmmm14.pdf). Note that the clean-speech and noise recordings used for this training set are separate from those used in the following test sets: Deep Xi Test Set (), Test Set from (), and the DEMAND Voicebank test set ().
DOI: 10.17632/9xtrmf4ngh.1
title: Evolution of microdischarges

description: This is a video clip of the microdischarges status in the entire plasma electrolytic oxidation process
DOI: 10.17632/w8zr6bgpsz.1
title: 5α-reductase inhibitors in men aged 50 years or older with androgenetic alopecia: a retrospective study

description: Androgenetic alopecia global photographs pre- and post-treatment of with 5α-reductase inhibitors (5ARI). The images compared patients before and after 5ARI treatment. Patient 1(M/55): greatly increased improvement(seven-point score: 3) after 10 months of dutasteride treatment (0.5 mg/d); patient 2(M/61): moderately increased improvement(seven-point score: 2) after 1 year of finasteride treatment (1 mg/d); patient 3(M/65): slightly increased improvement(seven-point score: 1) after 6 months of dutasteride treatment (0.5 mg/d); patient 4(M/77): slightly increased improvement(seven-point score: 1) after 9 months of finasteride treatment (1 mg/d).
DOI: 10.25345/c5bq30
title: MassIVE MSV000085158 - Salinispora metabolomics analysis _ compound screening
title: 27 strains from Salinispora genus including different species were grown in A1 media and extracted with Amberlite XAD-7 with acetone and ethyl acetate.
DOI: 10.25345/c50d8p
title: MassIVE MSV000085153 - GNPS - Amycolatopsis sp AA4 - small dataset
title: Amycolatopsis sp. AA4 strain obtained from Kolter Lab, Harvard Medical School. Original strain from Gerard D Wright. Genome available via [https://www.ncbi.nlm.nih.gov/nuccore/CP024894]. Culture of Amycolatops sp. AA4 on ISP2 agar media for 4 days and extracted with 50% MeOH:water. Extract were freeze-dried and resuspended for LC-MS/MS performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 mm C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source. Data was acquired in positive ion modes.
DOI: 10.6084/m9.figshare.8948075.v1
title: Additional file 4: of A positive feedback between IDO1 metabolite and COL12A1 via MAPK pathway to promote gastric cancer metastasis

description: Supplementary data. (XLSX 1337 kb)
DOI: 10.6084/m9.figshare.14715140
title: Additional file 22 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 22: Table S21. Gene expression analysis of Cbs+/+ vs. Cbs-/- mice.
DOI: 10.6084/m9.figshare.8948075
title: Additional file 4: of A positive feedback between IDO1 metabolite and COL12A1 via MAPK pathway to promote gastric cancer metastasis

description: Supplementary data. (XLSX 1337 kb)
DOI: 10.6084/m9.figshare.14715110.v1
title: Additional file 13 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 13: Table S12. List of differentially methylated (β-value difference ≥ 0.2) conserved CpG probes in HFE145 CBS-deficient clones.
DOI: 10.6084/m9.figshare.14715122
title: Additional file 17 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 17: Table S16. Overlap of genes in GES1 CBS-deficient clones with MSigDB hallmark gene sets (q-value &lt; 0.01).
DOI: 10.6084/m9.figshare.14715128.v1
title: Additional file 19 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 19: Table S18. Overlap of negatively and positively correlated genes to CBS in gastric TCGA (q-value &lt; 0.05) with MSigDB hallmark gene sets (q-value &lt; 0.01).
DOI: 10.6084/m9.figshare.14715137.v1
title: Additional file 21 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 21: Table S20. Overlap of negatively correlated genes to CBS in CCLE (q-value &lt; 0.05) with MSigDB hallmark gene sets (q-value &lt; 0.01).
DOI: 10.6084/m9.figshare.14715110.v2
title: Additional file 13 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 13: Table S12. List of differentially methylated (β-value difference ≥ 0.2) conserved CpG probes in HFE145 CBS-deficient clones.
DOI: 10.6084/m9.figshare.14715146.v1
title: Additional file 24 of Highly recurrent CBS epimutations in gastric cancer CpG island methylator phenotypes and inflammation

description: Additional file 24: Table S23. Top 20 pathways in the MSigDB overlap (q-value &lt; 0.01) of differentially expressed genes in CBS-deficient mouse gastric tissue.
DOI: 10.6084/m9.figshare.7375181
title: Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

description: Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details of markers localized in the integrated pear consensus MH-YM-BD map. (XLS 1695 kb)
DOI: 10.6084/m9.figshare.8948003.v1
title: Additional file 1: of NR6A1 regulates lipid metabolism through mammalian target of rapamycin complex 1 in HepG2 cells

description: Table S1. The sequences of primers and siRNAs. (XLS 29 kb)
DOI: 10.6084/m9.figshare.14715194
title: Additional file 3 of Single cell transcriptome revealed tumor associated antigen (TAA) profile in lung adenocarcinoma (LUAD)

description: Tumor-associated antigens (TAAs) expression profiles.