cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4xgxd25c8
title: Dispersal increases spatial synchrony of populations but has weak effects on population variability: a meta-analysis

description: The effects of dispersal on spatial synchrony and population variability
 have been well documented in theoretical research, and a growing number of
 empirical tests have been performed. Yet a synthesis is still lacking.
 Here, we conducted a meta-analysis of relevant experiments and examined
 how dispersal affected spatial synchrony and temporal population
 variability across scales. Our analyses showed that dispersal generally
 promoted spatial synchrony, and such effects increased with dispersal rate
 and decreased with environmental correlation among patches. The
 synchronizing effect of dispersal, however, was only detected when spatial
 synchrony was measured using the correlation-based index, but not for the
 covariance-based index. In contrast to theoretical predictions, the effect
 of dispersal on local population variability was generally
 non-significant, except when environment correlation among patch was
 negative and/or experimental period was long. At the regional scale, while
 low dispersal stabilized metapopulation dynamics, high dispersal led to
 destabilization. Overall, the sign and strength of dispersal effects on
 spatial synchrony and population variability were modulated by taxa,
 environmental heterogeneity, type of perturbations, patch number,
 and experimental length. Our synthesis demonstrates that dispersal can
 substantially affect the dynamics of spatially distributed populations,
 but its effects are context dependent on abiotic and biotic factors.
DOI: 10.5061/dryad.g79cnp5rz
title: Individual variation explains aging patterns in a cooperatively breeding bird, the long-tailed tit (Aegithalos caudatus)

description: 1. Alloparental care in cooperatively-breeding species may alter breeder
 age-specific survival and reproduction, and subsequently senescence. The
 helping behaviour itself might also undergo age-related change, and
 decisions to help in facultative cooperative breeders are likely to be
 affected by the individual condition. 2. Helpers in
 long-tailed tits (Aegithalos caudatus) assist relatives after
 failing to raise their own brood, with offspring from helped nests being
 more likely to recruit into the breeding population. 3. Using
 data collected over 25 years, we examined the age-trajectories of survival
 and reproduction in adult long-tailed tits to determine how these were
 affected by the presence or absence of helpers, and how helper behaviour
 changed with age. 4. There was evidence for increased
 reproductive performance with breeder age, but no effect of age on the
 probability of survival. We found no evidence of significant senescent
 decline in survival or reproductive performance, although individuals
 accrued less inclusive fitness in their last year of life.
  Lifetime reproductive success was positively related to both
 reproductive lifespan and body mass. Within a season, breeders that were
 assisted by helpers enjoyed greater reproductive success through enhanced
 offspring recruitment in the following year. We found no evidence that age
 affected an individual’s propensity to help, or the amount of indirect
 fitness accrued through helping. 5. We found a positive correlation
 between lifespan and multiple components of reproductive success,
 suggesting that individual variation in quality underpins age-related
 variation in fitness in this species. Helping decisions are driven by
 condition, and the lifetime inclusive fitness of immigrants was predicted
 by body mass. These findings further support individual heterogeneity in
 quality being a major driver for fitness gains across the life course of
 long-tailed tits.
description: Contains data to reproduce all analyses according to Table 1 in
 the manuscript. Please see 'README_for_Roperetal_LTTData' for
 dataset explanations.
DOI: 10.5061/dryad.jm63xsjd6
title: Data from "Evidence of attack deflection suggests adaptive evolution of wing tails in butterflies"

description: Predation is a powerful selective force shaping many behavioural and
 morphological traits in prey species. The deflection of predator attacks
 from vital parts of the prey usually involves the coordinated evolution of
 prey body shape and colour. Here, we test the deflection effect of
 hindwing tails in the swallowtail butterfly Iphiclides podalirius. In this
 species, hindwings display long tails associated with a conspicuous colour
 pattern. By surveying the wings within a wild population of I. podalirius,
 we observed that wing damage was much more frequent on the tails. We then
 used a standardised behavioural assay employing dummy butterflies with
 real I. podalirius wings to study the location of attacks by great tits
 Parus major. Wing tails and conspicuous coloration of the hindwings were
 struck more often than the rest of the body by birds. Finally, we
 characterised the mechanical properties of fresh wings and found that the
 tail vein was more fragile than the others, suggesting facilitated escape
 ability of butterflies attacked at this location. Our results clearly
 support the deflective effect of hindwing tails and suggest that predation
 is an important selective driver of the evolution of wing tails and colour
 pattern in butterflies.
DOI: 10.5061/dryad.kd51c5b7v
title: Data from: Loamy sand soil approaches organic carbon saturation after 37 years of conservation tillage

description: This is digital research data corresponding to a published manuscript,
 Loamy sand soil approaches organic carbon saturation after 37 years of
 conservation tillage. Conservation tillage is reported to increase soil
 organic carbon (SOC) and total nitrogen (TN) contents, but long-term
 (&gt;30 yr) field results quantifying the responses in Coastal Plain
 Ultisols are sparse. The distribution, accumulation, and topsoil storage
 of SOC and TN after 37 yr of crop production using conventional (CvT) or
 conservation tillage (CnT) on a Norfolk loamy sand (fine-loamy,
 kaolinitic, thermic, Typic Kandiudults) were quantified. Soil samples were
 collected annually from the 0−5-, 5−10-, and 10−15-cm depth increments
 beneath corn (Zea mays L.), soybean [Glycine max (L.) Merr.], and cotton
 (Gossypium hirsutum L.) crops.
description: Methods are described in the manuscript
 https://doi.org/10.1002/agj2.20184
description: Descriptions corresponding to each data table and figure in the
 manuscript are placed on separate tabs in the Excel file to clarify
 abbreviations and summarize the data headings and units.
DOI: 10.5061/dryad.j0zpc86h4
title: NREM sleep EEG and wake ERP summary: The first wave of the Global Research Initiative on the neurophysiology of schizophrenia (GRINS)

description: Motivated by the potential of objective neurophysiological markers to
 index thalamocortical function in patients with severe psychiatric
 illnesses, we comprehensively characterized key NREM sleep parameters
 across multiple domains, their interdependencies, and their relationship
 to waking event-related potentials and symptom severity. In 72
 schizophrenia (SCZ) patients and 58 controls, we confirmed a marked
 reduction in sleep spindle density in SCZ and extended these findings to
 show that fast and slow spindle properties were largely uncorrelated. We
 also describe a novel measure of slow oscillation and spindle interaction
 that was attenuated in SCZ. The main sleep findings were replicated in a
 demographically distinct sample, and a joint model, based on multiple NREM
 components, statistically predicted disease status in the replication
 cohort. Although also altered in patients, auditory event-related
 potentials elicited during wake were unrelated to NREM metrics. Consistent
 with a growing literature implicating thalamocortical dysfunction in SCZ,
 our characterization identifies independent NREM and wake EEG biomarkers
 that may index distinct aspects of SCZ pathophysiology and point to
 multiple neural mechanisms underlying disease heterogeneity. This study
 lays the groundwork for evaluating these neurophysiological markers,
 individually or in combination, to guide efforts at treatment and
 prevention as well as identifying individuals most likely to benefit from
 specific interventions.
description: Sleep EEG data were preprocessed using an open-source C/C++
 software package Luna http://zzz.bwh.harvard.edu/luna/.
description: This dataset contains anonymized individual-level data for the
 derived sleep EEG metrics (NREM2 stage) and wake auditory ERP for 72
 subjects with schizophrenia and 58 controls.
DOI: 10.5061/dryad.tb2rbp02v
title: Data from: Plant diversity improves resistance of plant biomass and soil microbial communities to drought

description: 1. Biodiversity is known to affect ecosystem resistance and have
 implications for the maintenance of ecosystem functions and services under
 climate change. Compared to numbers of studies focusing on aboveground
 vegetation, the response of belowground communities to abiotic stresses
 along plant diversity gradients is often ignored and is considered an
 important knowledge gap in ecosystem ecology. Here we conducted an
 integrative research to evaluate the resistance of plant biomass, and soil
 microbial communities and associated functional profiles to drought under
 varying plant diversity. 2. We carried out a three-year manipulation
 experiment by factorially controlling plant diversity gradient (1, 2, 4,
 and 8 species richness) and soil moisture treatment (drought and
 non-drought), and investigated the responses of plant biomass, soil
 bacterial and fungal diversity and community composition, soil glomalin,
 and five key soil enzymes. 3. We found that plant diversity significantly
 improved the resistance of soil fungal communities and microbial
 functional profiles characterized by soil glomalin and five key enzymes,
 which was partly driven by the availability and accessibility of soil
 resources (e.g., soil moisture and organic matter) mediated by plant
 diversity. Further, our results indicated that the enhanced resistance of
 fungal communities was consistent with ecological insurance theory that
 diverse fungal communities at high plant diversity had a higher
 probability of containing taxa that adapt to drought. 4. Synthesis. Our
 study provides novel empirical insights into the mechanism underlying the
 regulatory effect of plant diversity on resistance of aboveground
 vegetation and belowground biota to drought, with implications for
 understanding ecosystem response to climate change and improving
 biodiversity conservation practices.
DOI: 10.5061/dryad.bzkh189c3
title: Age-specific activation patterns and inter-subject similarity during verbal working-memory maintenance and Cognitive Reserve

description: Cognitive Reserve, according to a recent consensus definition of the
 NIH-funded Reserve and Resilience collaboratory
 (https://reserveandresilience.com/), is constituted by any mechanism
 contributing to cognitive performance beyond, or interacting with, brain
 structure in the widest sense. To identity multivariate activation
 patterns fulfilling this postulate, we investigated a verbal Sternberg
 fMRI task and imaged 181 people with age coverage in the ranges 20-30 (44
 participants) and 55-70 (137 participants). Beyond task performance,
 participants were characterized in terms of demographics, and
 neuropsychological assessments of vocabulary, episodic memory, perceptual
 speed, and abstract fluid reasoning. Participants studied an array of
 either 1, 3, or 6 upper-case letters for 3 seconds (=encoding phase), then
 a blank fixation screen was presented for 7 seconds (=maintenance phase),
 to be probed with a lower-case letter to which they responded with a
 differential button press whether the letter was part of the studied array
 or not (=retrieval phase). We focused on identifying maintenance-related
 activation patterns showing memory-load increases in pattern score on an
 individual-participant level for both age groups. We found such a pattern
 that increased with memory load for all but one person in the young
 participants (p&lt;0.001), and such a pattern for all participants in
 the older group (p&lt;0.001). Both patterns showed broad topographic
 similarities; however, relationships to task performance and
 neuropsychological characteristics were markedly different and point to
 individual differences in Cognitive Reserve. Beyond the derivation of
 group-level activation patterns, we also investigated the inter-subject
 spatial similarity of individual working-memory rehearsal patterns in the
 older participants’ group as a function of neuropsychological and task
 performance, education and mean cortical thickness. Higher task accuracy
 and neuropsychological function was reliably associated with higher
 inter-subject similarity of individual-level activation patterns in older
 participants.
description: The data involves functional fMRI for 181 participants.
 Pre-processing and analytic details can be found in the
 manuscript.
description: Usage notes are included and provided in a README.doc file. They
 contain: - an explanation of variables in a Matlab data
 archive - a listing of most important Matlab .m files
 and how to execute them to recreate the main brain-behavioral results of
 the paper - a listing of 4 thresholded and
 sign-weighted voxel-wise Z-images that can be visualized, for instance
 with the package MRIcron
DOI: 10.5061/dryad.kwh70rz60
title: Zapus hudsonius luteus microsatellite and mtDNA datasets

description: In the face of accelerated warming and drying, habitat specialists of
 riparian zones could be threatened with genetic erosion if their effective
 population sizes become small due to loss and fragmentation of habitat.
 The New Mexico meadow jumping mouse (Zapus hudsonius luteus) is Endangered
 due to a suite of disturbances to their riparian habitat but the degree of
 functional connectivity within and among the drainages they occupy is
 unknown. Using microsatellite and mtDNA, we examined the hypothesis of
 hydrologically-mediated gene flow (via riparian networks) by assessing
 structure, diversity, and the possibility of overland dispersal among
 disconnected watersheds (White Mountains, AZ). Both a priori and de novo
 structure supported stream-mediated gene flow. However, inferred clusters
 crossed watershed boundaries, and migration rates and dispersers suggest
 infrequent use of overland paths at nearby sub-drainages among each
 watershed. Analysis of mtDNA indicated that this was likely a long-term
 phenomenon, also suggesting that one of the watersheds (LCR) may have been
 more historically diverse than its contemporary snapshot (nuDNA). Our
 analysis led us to suspect fragmentation in its eastern fork, an area most
 impacted by human development. We conclude that the boundaries of
 drainages affect the White Mountains population structure but short,
 cryptic, overland paths among them likely play a role in replenishing
 genetic diversity. We also report an extension to the species longevity
 from 2 to 4 years from genetic recaptures during our six-year study
 period.
description: We generated 101 multi-locus genotypes (diploid) from 8
 microsatellite DNA loci. We collected microsatellite data using multiplex
 PCR reactions and fragment length analysis using an ABI 3130 capillary
 sequencer. We called alleles using GeneMarker software. We also generated
 DNA sequence data (mitochondrial DNA, cytochrome B; 929 bp) for 63 of the
 specimens, whereas 15 of the sequences were mined from NCBI GenBank. The
 DNA sequences were assembled from four amplicons using custom primer sets
 to amplify from degraded DNA sources (e.g., feces, historical). We used
 bi-directional Sanger sequencing on an ABI 3130 capillary sequencer to
 generate the sequence data. We assembled the amplicons for each specimen
 to a reference sequence from NCBI GenBank using Sequencher 5.4.
DOI: 10.5061/dryad.37pvmcvn6
title: Data from: Speciation in Nearctic oak gall wasps is frequently correlated with changes in host plant, host organ, or both

description: Quantifying the frequency of shifts to new host plants within diverse
 clades of specialist herbivorous insects is critically important to
 understand whether and how host shifts contribute to the origin of
 species. Oak gall wasps (Hymenoptera: Cynipidae: Cynipini) comprise a
 tribe of ~1000 species of phytophagous insects that induce gall formation
 on various organs of trees in the family Fagacae —primarily the oaks
 (genus Quercus; ~435 sp). The association of oak gall wasps with oaks is
 ancient (~50 my), and most oak species are galled by one or more gall wasp
 species. Despite the diversity of both gall wasp species and their plant
 associations, previous phylogenetic work has not identified the strong
 signal of host plant shifting among oak gall wasps that has been found in
 other phytophagous insect systems. However, most emphasis has been on the
 Western Palearctic and not the Nearctic where both oaks and oak gall wasps
 are considerably more species rich. We collected 86 species of Nearctic
 oak gall wasps from 10 of the 14 major clades of Nearctic oaks and
 sequenced &gt;1000 Ultra Conserved Elements (UCEs) and flanking
 sequences to infer wasp phylogenies. We assessed the relationships of
 Nearctic gall wasps to one another and, by leveraging previously published
 UCE data, to the Palearctic fauna. We then used phylogenies to infer
 historical patterns of shifts among host tree species and tree organs. Our
 results indicate that oak gall wasps have moved between the Palearctic and
 Nearctic at least four times, that some Palearctic wasp clades have their
 proximate origin in the Nearctic, and that gall wasps have shifted within
 and between oak tree sections, subsections, and organs considerably more
 often than previous data have suggested. Given that host shifts have been
 demonstrated to drive reproductive isolation between host-associated
 populations in other phytophagous insects, our analyses of Nearctic gall
 wasps suggest that host shifts are key drivers of speciation in this
 clade, especially in hotspots of oak diversity. Though formal assessment
 of this hypothesis requires further study, two putatively oligophagous
 gall wasp species in our dataset show signals of host-associated genetic
 differentiation unconfounded by geographic distance, suggestive of
 barriers to gene flow associated with the use of alternative host plants.
DOI: 10.15468/dl.t3tf9h
title: Occurrence Download

description: A dataset containing 759488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Alnus glutinosa",
 "Year 1973-2026"
 ]
}

 The dataset includes 759488 records from 2337 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003073-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcnah6
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Homalopteroides tweediei)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025401-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pmau2
title: Occurrence Download

description: A dataset containing 18594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Larix laricina"
 ]
}

 The dataset includes 18594 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024871-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k935yd
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 458 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024875-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hn886g
title: Occurrence Download

description: A dataset containing 1852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lamproptera curius"
 ]
}

 The dataset includes 1852 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002081-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbguhw
title: Occurrence Download

description: A dataset containing 1416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Collection Crustacea SMF",
 {
 "or" : [
 "Geometry POLYGON((-12.43203 27.04865,39.9613 27.04865,39.9613 47.99701,-12.43203 47.99701,-12.43203 27.04865))",
 "Geometry POLYGON((-6.45183 35.66593,-5.17553 34.74171,-3.67919 34.56567,-1.65472 34.56567,0.1497 35.35786,2.74631 36.50212,9.91997 36.72217,8.64368 34.43364,12.95668 31.92506,16.78557 30.47272,19.0741 29.32846,20.96654 31.61699,21.6707 32.45318,26.99594 30.56074,30.78081 31.00085,32.98132 30.51673,35.22585 31.35293,36.28209 33.20136,36.76621 35.62192,35.62194 36.89822,33.24539 36.98624,29.46051 37.33832,28.00817 37.82243,26.99594 40.02294,29.46051 41.03518,26.95193 41.60731,22.37486 41.34325,22.28684 39.4068,21.36263 38.5706,19.77826 41.87137,16.0814 44.77605,13.44078 45.83229,11.94444 45.61224,13.22073 43.41173,16.34546 39.80289,14.89312 40.63908,11.10824 42.97163,9.30382 44.46797,6.1791 43.2797,3.62651 43.54376,2.79031 41.95939,-0.20238 40.33101,-1.21462 38.35055,-6.45183 35.66593))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Decapoda"
 ]
}

 The dataset includes 1416 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002082-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18385202
title: Data and plotting code for "Quantum Cellular Automata on a Dual-Species Rydberg Processor"

description: Data and plotting code for "Quantum Cellular Automata on a Dual-Species Rydberg Processor", R. White, V. Ramesh, A. Impertro, S. Anand, F. Cesa, G. Giudici, T. Iadecola, H. Pichler, H. Bernien. (2026)

This directory contains:-  "QCA_figure_plotting.ipynb": a jupyter notebook which produces the plots and images from this paper-  "Data analysis.zip": a zip file containing the SPAM-corrected data as used for plotting, in .npy format

Tested using Python 3.8.10, using LuaLaTex backend for PDF compiling
DOI: 10.5281/zenodo.18385201
title: Data and plotting code for "Quantum Cellular Automata on a Dual-Species Rydberg Processor"

description: Data and plotting code for "Quantum Cellular Automata on a Dual-Species Rydberg Processor", R. White, V. Ramesh, A. Impertro, S. Anand, F. Cesa, G. Giudici, T. Iadecola, H. Pichler, H. Bernien. (2026)

This directory contains:-  "QCA_figure_plotting.ipynb": a jupyter notebook which produces the plots and images from this paper-  "Data analysis.zip": a zip file containing the SPAM-corrected data as used for plotting, in .npy format

Tested using Python 3.8.10, using LuaLaTex backend for PDF compiling