cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1103027.10fu
title: SH1103027.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1103029.10fu
title: SH1103029.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1103031.10fu
title: SH1103031.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.5980240.v1
title: Evaluation of the maladaptation of the test base in acrylic resin regarding the technique of preparation, place of measurement and storage time

description: Abstract Introduction The most used material for the preparation of the baseplates is the acrylic resin, but it can present distortions. Objective To evaluate preparation technique, region and storage time that presents less maladaptation of the base when made with self-cured acrylic resin. Material and method Models were created in gypsum type III simulating edentulous maxilla, as divided into 3 groups (n = 10): GC (control group) thermopolymerizable acrylic resin; G1 - manual adaptation technique and G2 - drip technique. For the measurements, silicone by condensation of light consistency that was interposed between base and model was used. With a hydraulic press, 50 kg pressure was applied leading the base of the model. The obtained mold was measured in the palate, canine and molar regions with a digital caliper at the following times: immediately after the base polymerization, at 24, 48, 72, 96 hours and one week. The results were submitted to statistical analysis. Result G1 presented maladaptation of 0.43 mm ± 0.10, while G2 obtained 0.39 mm ± 0.11. The lowest maladaptation occurred in the CG. The palate region presented greater maladaptation (0.52 ± 0.07) and the canine region, the lowest (CD = 0.27 mm ± 0.07 and CE = 0.27 ± 0.09); There was no statistically significant difference for storage times. Conclusion G2 presented lower values than G1, with no statistically significant difference. The palate region presented greater maladaptation, followed by molars and canines. The bases continued to maladaptation the model after the immediate polymerization, with no statistically significant difference.
DOI: 10.3535/r5c-p11-15y
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xnf-fk3-5bb
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7799063.v1
title: ColPortal zoomify image examples

description: Images from hematoxylin eosin histological preparations corresponding to colorectal cancer tissues.
DOI: 10.3535/3wl-fwf-arb
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yle-hqq-djv
title: Coccosteidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1465047.v1
title: Table 3

description: Data for Table 3
DOI: 10.6084/m9.figshare.28636109.v5
title: Towards More Dependable Specifications: An Empirical Study Exploring the Synergy of Traditional and LLM-Based Repair Approaches

description: Declarative specification languages like Alloy are critical for modeling and verifying complex software systems, yet repairing these specifications remains a significant challenge for ensuring software dependability. This study conducts the first comprehensive empirical evaluation comparing traditional systematic repair techniques with emerging Large Language Model (LLM)-based approaches across two established benchmarks, analyzing over 1,900 Alloy specifications.By systematically analyzing repair success rates, ground truth similarity, and repair generation strategies, we reveal nuanced performance characteristics of different repair methodologies. Our findings demonstrate that while traditional tools excel in systematic fault localization and achieving high ground truth similarity, LLM-based techniques—particularly multi-round prompting approaches—offer unique capabilities in addressing complex specification errors, with some hybrid approaches achieving repair rates of up to 85.5\%.Critically, we show that integrating traditional fault localization techniques with LLM-based repair strategies can significantly enhance overall repair effectiveness and specification dependability. This research provides a large-scale empirical evaluation of how various Alloy repair techniques work in synergy, offering valuable insights that chart a promising path for future automated specification repair approaches and contribute to the development of more reliable and secure software systems.
DOI: 10.6084/m9.figshare.5223928.v2
title: Air Traffic Management Case Study SecBPMN2 models

description: The bpmn models that are provided in <em>my.example</em> directory represnts a SecBPMN2 models for our <em>Air Traffic Management System</em> case study. Please note that you can not open or modify these models directly from your Eclipse. These models are designed by using the Socio-Technical-System (STS) tool. To view and modify these bpmn models please follow the provided in the README file.
DOI: 10.3535/4hw-kg1-3ep
title: Coccosteus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7ss-8rw-2x9
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7hs-pr6-pdb
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xlr-njj-eee
title: Coccosteus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28587704.v1
title: Data_files_wildlife_group_size

description: This folder contains the data files for the project "Human disturbance impacts on wildlife sociality and group sizes."
DOI: 10.3535/vt1-zpq-a3x
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12907433.v1
title: series1_GSE147507 : SARS-CoV-2 (USA-WA1/2020) viral gene expression from infected (MOI 2.0) NHBE Cells

description: RNA-Seq reads (FASTQ) of biological triplicates from NHBE cells infected with SARS-CoV-2 (USA-WA1/2020, MOI 2.0) (series1_GSE147507) were downloaded from NCBI SRA, and data analysis was performed using CLC Genomics workbench (CLC v20). The reads were first aligned to the human genome (hg38) with annotations (Ensemble v91), and then all unmapped reads were aligned to the SARS-Cov-2 reference genome NC_045512. The expression of each virus gene is quantified and reported as total counts and transcripts per million (TPM).<br>
DOI: 10.17632/bb8j5yxj95
title: spatial analysis based on line-of-sight simulation

description: Based on grasshopper and point cloud data, 3D visual simulation is carried out to realize accurate quantification of 3D spatial morphological features, serving the mapping of spatial features
DOI: 10.3535/8mr-s6y-7gj
title: Coccosteus markae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hc4-k5g-ecd
title: Coccosteidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10052696.v1
title: MOESM4 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 4. Summary of enriched pathways for each module.
DOI: 10.6084/m9.figshare.19325870.v1
title: VPA Data.xlsx

description: Data of volumetric estimations of VPA volumes and VPA neuron soma volumes.<br>
DOI: 10.6084/m9.figshare.26866762.v1
title: Efficiency of recurrent genomic selection in panmictic populations

description: SNP (sample.txt) and phenotype (values.txt) files under additive-dominance and additive-dominance with epistasis models.
DOI: 10.3535/ab1-mzk-wf8
title: Eastmanosteus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3819286_d7.v1
title: Additional file 2: of Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses

description: Biochemical parameters obtained from 41 blood samples collected after the 160 km endurance competition. Samples were obtained for ten horses from the experimental set and 31 horses from the validation set. (XLS 34 kb)
DOI: 10.3535/lhm-s5l-d64
title: Urvaspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yb2-93c-jds
title: Livosteus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.4460569
title: Koranic Science by IBN JAZARÎ [IO Islamic 1435]

description: al-Qurʼān القرآن الكريم
	
This manuscript is now IO Islamic 1435 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 48 here with further notations and hyperlinks].



48.


1435. Size 93/4 in. by 6 in. Twelve lines in a page.


Foll. 6-16. IBN JAZARÎ’s (Muḥammad b. Muḥammad, d. A. H. 833) المقدّمة, or Treatise in Verse on the Pronunciation of the Koran. Cf. Ḥ. Kh. vi. 78; Cat. Bodl. ii. 190.


Well written in a large hand, with vowel-points. In narrow columns. The margin is wholly filled up with Persian glosses, written in small Shikasta. Leaves have been frequently inserted on which other glosses are written.


The rest of the volume contains Persian treatise on similar subjects.-See Persian MSS.


[Johnson.]
DOI: 10.5281/zenodo.4460570
title: Koranic Science by IBN JAZARÎ [IO Islamic 1435]

description: al-Qurʼān القرآن الكريم
	
This manuscript is now IO Islamic 1435 in the India Office collections.
	
[metadata: Otto Loth, A Catalogue of the Arabic Manuscripts in the Library of the India Office, (volume 1), no. 48 here with further notations and hyperlinks].



48.


1435. Size 93/4 in. by 6 in. Twelve lines in a page.


Foll. 6-16. IBN JAZARÎ’s (Muḥammad b. Muḥammad, d. A. H. 833) المقدّمة, or Treatise in Verse on the Pronunciation of the Koran. Cf. Ḥ. Kh. vi. 78; Cat. Bodl. ii. 190.


Well written in a large hand, with vowel-points. In narrow columns. The margin is wholly filled up with Persian glosses, written in small Shikasta. Leaves have been frequently inserted on which other glosses are written.


The rest of the volume contains Persian treatise on similar subjects.-See Persian MSS.


[Johnson.]
DOI: 10.6084/m9.figshare.13348406.v3
title: Psychological Distress and Burden of Care among Family Caregivers of Patients with Mental Illness in a Neuropsychiatric Outpatient Clinic in Nigeria

description: Data include information of participants who were family caregivers of relatives diagnosed with mental illness. Females were 57% and males 43.1%. Majority of participants were aged 15-29 years 43.6%. Other background information such as diagnosis of caregiver’s relatives is also present in dataset. Information in the dataset also include the GHQ12 and Zarit Burden Interview (ZBI) scale that assessed the psychological health and burden of caregiving in the respondent. The total sample is 415. Sample was collected in a psychiatric clinic in Nigeria.
DOI: 10.6084/m9.figshare.23788307.v1
title: Additional file 2 of Diagnostic value and immune infiltration characterization of YTHDF2 as a critical m6A regulator in osteoarthritic synovitis

description: Additional file 2: The list of macrophage-related genes.
DOI: 10.6084/m9.figshare.7697816.v3
title: Differences between the PubMed record and full-text methods section in in-vivo animal research articles

description: Large animal protocols submitted to Institutional Animal Care and Use Committees (IACUCs) are required to include searches for alternatives and address the “3Rs": <br><br>1. Refinement: use methodology and protocols that reduce pain and distress<br>2. Replacement: substitute animals with non-animal models or lower species<br>3. Reduction: minimize the number of animals <br>Locating descriptions of methodology for the refinement concept is challenging since PubMed (and most other databases) do not search full-text. <br>The objectives of this study were to determine how well the title, abstract, and MeSH terms cover the content of the methods section in in-vivo animal research articles, particularly with respect to procedures, drugs, and animal species used, and to describe how this might impact a search.<br>The title/abstract, MeSH terms, and methods section of each article were reviewed and details such as: animal species, number of animals, description of housing, description of experimental procedures used, and analgesia/anesthesia were extracted. <br><br>Articles were screened from April 2017 - September 2017. <br><br>Details for the methodology used and description of uploaded files are provided in the README.txt file. <br>
DOI: 10.3535/gby-2fj-x8g
title: Arthrodira

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qmw-p52-gwj
title: Coccosteus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y78-1ff-l5e
title: Coccosteidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11858046.v1
title: Quantum mechanics and 3D-QSAR studies on Thienopyridine analogues: inhibitors of IKKβ

description: A group of diversified thienopyridine derivatives exhibited a wide range of biological activity was used to investigate its structural requirements by using density functional theory (DFT) and the 3D-quantitative structure activity relationship
DOI: 10.3535/kpj-was-2vl
title: Coccosteidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.15161208.v1
title: processed data

description: This is the processed data for paper "Observation of the Modification of Quantum Statistics of Plasmonic Systems"
DOI: 10.17632/dnrkf5jxzh
title: Numerical scattering amplitudes with pySecDec

description: We present a major update of the program pySecDec, a toolbox for the evaluation of dimensionally regulated parameter integrals. The new version enables the evaluation of multi-loop integrals as well as amplitudes in a highly distributed and flexible way, optionally on GPUs. The program has been optimised and runs up to an order of magnitude faster than the previous release. A new integration procedure that utilises construction-free median Quasi-Monte Carlo rules is implemented. The median lattice rules can outperform our previous component-by-component rules by a factor of 5 and remove the limitation on the maximum number of sampling points. The expansion by regions procedures have been extended to support Feynman integrals with numerators, and functions for automatically determining when and how analytic regulators should be introduced are now available. The new features and performance are illustrated with several examples.
DOI: 10.3535/9sf-cy7-ld4
title: Coccosteidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zbq-frn-mlp
title: Arthrodira

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5665912.v1
title: Additional file 1: Table S1. of Genetic diversity and association mapping of mineral element concentrations in spinach leaves

description: Spinach PI accession number, name, origin/country, cluster assigned in this study, taxon name, and 14 mineral element concentrations in 292 germplasm accessions. Table S2. Spinach PI accession number, taxon name, origin country, cluster assigned in this study, mineral element, mineral ID ranked in top three, and 14 mineral element concentrations in 292 germplasm accessions. (XLSX 105 kb)
DOI: 10.3535/963-kg9-jd3
title: Ephedra Tourn. ex L.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5501773.v2
title: Vitamin D supplementation and non-alcoholic fatty liver disease: A critical and systematic review of clinical trials

description: Previous observational studies have found a relationship between vitamin D deficiency and non-alcoholic fatty liver disease (NAFLD). However, this type of study could not show the causal relationship between these two conditions. Therefore, we systematically and critically reviewed the available clinical trials to elucidate such relationship. We searched databases such as Medline, Scopus and Cochrane to identify the clinical trials that assessed the effects of vitamin D supplementation in adults with NAFLD. The outcome variables of interest were indicators of hepatic steatosis, liver enzymes, insulin resistance, inflammation and oxidative stress. A total of 6 studies were included in the qualitative analysis. Only in two studies the grade of hepatic steatosis decreased significantly after vitamin D supplementation. The changes in insulin resistance parameters were reported significant only in one. Of the 3 included studies that measured biomarkers of inflammation and oxidative stress, one revealed a significant decrease in these biomarkers after vitamin D supplementation. Findings from current review study provided new insight into the factors that could affect the therapeutic role of vitamin D in NAFLD. Factors such as gender differences, baseline serum status of vitamin D, co-supplementation with calcium and gene polymorphism should be considered when designing future clinical trials.
DOI: 10.17632/ds2bxttpf8
title: Data for: Job Polarization and the Natural Rate of Unemployment in the United States

description: The data used for figures in Tuzemen (2018).
DOI: 10.3535/51y-d40-y7v
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5ja-ah6-j7b
title: Barite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.25902694.v2
title: S1Dataset.xlsx

description: Existing studies have explored the impact of venture capital shareholding on the GEM-listed companies before and after listing from multiple perspectives. However, there has been limited research on the influence of venture capital shareholding on these companies’ mergers and acquisitions(M&A)activities and performance. Additionally, two conflicting research findings have been presented in limited relevant studies. In order to clarify the mechanism by which venture capital shareholding affects M&A activities and performance of GEM-listed companies and verify existing research conclusions, this paper takes 468 M&A events completed by the acquirer of China’s GEM-listed companies between 2014 and 2016 as samples to explore venture capital shareholding’s effects on the M&A performance of GEM-listed enterprises. The empirical findings demonstrate that GEM-listed enterprises with venture capital shareholding perform significantly better in terms of short-term and long-term M&A performance than those without; with the increase in venture capital shareholding ratio, the short-term M&A performance of GEM-listed enterprises has remarkably improved, but the long-term M&A performance does not show obvious correlation; joint investment of venture capital can significantly improve the short-term M&A performance of GEM-listed enterprises, but it has no substantial influence on long-term M&A performance. Based on further analysis of the empirical study, it is concluded that the common one-share ownership structure of GEM-listed enterprises is not conducive to the play of the monitoring function of venture capital, and the insufficient incentives and free-riding thinking also weaken the motivation and input of some venture capital shareholders to provide value-added services. This study systematically elucidates the mechanism and impact of venture capital shareholding on the M&A performance of GEM-listed companies, addressing the shortcomings in existing research. It is conducive for GEM-listed companies to gain a rational understanding and effectively leverage the active role of venture capital shareholders in M&A activities.
DOI: 10.3535/dnh-zf0-zry
title: Barite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jz3-djt-jdj
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13242494.v1
title: Data for Tables 1 3 S4 and S5

description: Dataset to recreate results shown in Tables 1 3 S4, and S5 as well as Figures 1, 2, and S1
DOI: 10.3535/qzj-p9q-8fk
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.