cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.960018
title: On growth and form of a heteromorphic terrestrial snail: Plectostoma concinnum (Fulton, 1901) (Mollusca: Gastropoda: Diplommatinidae)

description: Supplemental Information Supplemental Information File S1. Microclimatic variation for Pangi plots. Supplemental Information File S2. Raw image of 65 measured shells for Part 1 and Part 3(b). Supplemental Information File S3. Correlation between 2D and 3D arc length measurement of three specimens. Supplemental Information File S4. Raw data for analysis in Parts 1, 2 and 3, and the R scripts. Supplemental Information File S5. Python scripts for 3D aperture morphometrics and growth trajectory analysis. Supplemental Information File S6. Digitalised aperture outlines (n=33) of 5 specimens used in Part 2(a). Supplemental information File S7. Comparison between raw digitised and Elliptical Fourier reconstructed aperture outlines. Supplemental Information File S8. Data of rotation analysis in Blender format for Part 2(b). Supplemental information File S9. Digitalised 3D ontogeny axis of a shell for torsion and curvature analysis in Blender. Supplemental Information File S10. Absolute shell whorl arc length added during the growth experiments. Supplemental information File S11. PCA results of Elliptical Fourier coefficient for aperture shape analysis in Part 2(a).
DOI: 10.6084/m9.figshare.960033
title: readme for Lunterse beek dataset

description: The readme file explains the structure of the dataset.
DOI: 10.6084/m9.figshare.960006.v1
title: Gaussian Job Archive for C8H6F3NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.960007.v1
title: Gaussian Job Archive for C8H7F3N2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.960038.v3
title: Lunterse beek

description: This dataset consists of morphological and hydrological data obtained in a post-project assessment of a reconstructed lowland stream in the Netherlands. A detailed description of the data is provided in the readme file.
DOI: 10.6084/m9.figshare.960000
title: Gaussian Job Archive for C9H5F3N2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.959999
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.960000.v1
title: Gaussian Job Archive for C9H5F3N2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.960018.v2
title: On growth and form of a heteromorphic terrestrial snail: Plectostoma concinnum (Fulton, 1901) (Mollusca: Gastropoda: Diplommatinidae)

description: Supplemental Information Supplemental Information File S1. Microclimatic variation for Pangi plots. Supplemental Information File S2. Raw image of 65 measured shells for Part 1 and Part 3(b). Supplemental Information File S3. Correlation between 2D and 3D arc length measurement of three specimens. Supplemental Information File S4. Raw data for analysis in Parts 1, 2 and 3, and the R scripts. Supplemental Information File S5. Python scripts for 3D aperture morphometrics and growth trajectory analysis. Supplemental Information File S6. Digitalised aperture outlines (n=33) of 5 specimens used in Part 2(a). Supplemental information File S7. Comparison between raw digitised and Elliptical Fourier reconstructed aperture outlines. Supplemental Information File S8. Data of rotation analysis in Blender format for Part 2(b). Supplemental information File S9. Digitalised 3D ontogeny axis of a shell for torsion and curvature analysis in Blender. Supplemental Information File S10. Absolute shell whorl arc length added during the growth experiments. Supplemental information File S11. PCA results of Elliptical Fourier coefficient for aperture shape analysis in Part 2(a).
DOI: 10.6084/m9.figshare.960033.v1
title: readme for Lunterse beek dataset

description: The readme file explains the structure of the dataset.
DOI: 10.6084/m9.figshare.960018.v1
title: On growth and form of a heteromorphic terrestrial snail: Plectostoma concinnum (Fulton, 1901) (Mollusca: Gastropoda: Diplommatinidae)

description: Supplemental Information Supplemental Information File S1. Microclimatic variation for Pangi plots. Supplemental Information File S2. Raw image of 65 measured shells for Part 1 and Part 3(b). Supplemental Information File S3. Correlation between 2D and 3D arc length measurement of three specimens. Supplemental Information File S4. Raw data for analysis in Parts 1, 2 and 3, and the R scripts. Supplemental Information File S5. Python scripts for 3D aperture morphometrics and growth trajectory analysis. Supplemental Information File S6. Digitalised aperture outlines (n=33) of 5 specimens used in Part 2(a). Supplemental information File S7. Comparison between raw digitised and Elliptical Fourier reconstructed aperture outlines. Supplemental Information File S8. Data of rotation analysis in Blender format for Part 2(b). Supplemental information File S9. Digitalised 3D ontogeny axis of a shell for torsion and curvature analysis in Blender. Supplemental Information File S10. Absolute shell whorl arc length added during the growth experiments. Supplemental information File S11. PCA results of Elliptical Fourier coefficient for aperture shape analysis in Part 2(a).
DOI: 10.6084/m9.figshare.960038.v4
title: Dataset belonging to the detailed morphological assessment of the Lunterse beek stream restoration project (the Netherlands)

description: This dataset consists of morphological and hydrological data obtained in a post-project assessment of a reconstructed lowland stream in the Netherlands. A detailed description of the data is provided in the readme file.
DOI: 10.6084/m9.figshare.958957
title: XYZUVW predicted positions for J1247-3812 and J1207-3900 vs TWA members.

description: These figures show the expected 3-dimensional XYZ and UVW positions of J1207-3900 and J1247-3812 (see Gagné et al. 2014b, first link below; red points; blue lines point to their projections on the 3 planes), compared to the XYZ positions of bona fide members from Malo et al. 2013 (see third link below; green points; their projections are also shown on the 3 planes, and only vertical lines pointing to their XY-or UV-plane projections are shown for clarity). The orange ellipsoid and its projections on the 3 planes represent the 1.5-sigma contour of the spatial model of the moving group in question. The statistical distance predictions from BANYAN II (see Gagné et al. 2014a, second link below) for RVs and distances were used to compute the XYZ or UVW of the two TWA candidates. Measurements of distance and RVs were used in the case of bona fide members. If you use any of these figures, please cite the 3 papers linked below.
DOI: 10.6084/m9.figshare.958959
title: J1207-3900 and J1247-3812 compared to BASS candidates in color-magnitude diagrams

description: These figures show the positions of J1207 and J1247 (red star symbols; see Gagné et al. 2014b; first link below) in 2MASS/WISE color-magnitude diagrams, compared to the field sequence (black line), its scatter (gray region) and all candidate members to young moving groups from the BASS sample (black dots or purple dots when youth is confirmed; see Gagné et al. 2013; second link below) Please cite the papers below (see related links) when using this figure.
DOI: 10.6084/m9.figshare.958959.v1
title: J1207-3900 and J1247-3812 compared to BASS candidates in color-magnitude diagrams

description: These figures show the positions of J1207 and J1247 (red star symbols; see Gagné et al. 2014b; first link below) in 2MASS/WISE color-magnitude diagrams, compared to the field sequence (black line), its scatter (gray region) and all candidate members to young moving groups from the BASS sample (black dots or purple dots when youth is confirmed; see Gagné et al. 2013; second link below) Please cite the papers below (see related links) when using this figure.
DOI: 10.6084/m9.figshare.958955
title: Proper Motion of J1207-3900 and J1247-3816 vs TWA Members

description: This figure shows map of the position and proper motion of bona fide members to TW Hydrae (green arrows; Malo et al. 2013, second link), compared to those of J1247-3816 and J1207-3900 (red arrows; see Gagné et al. 2014b, first link). Each star's proper motion vector is prolongated into a great circle on the celestial sphere, to show that they converge in two points (the apex and anti-apex, blue circles are 1-sigma and 3-sigma apex calculated from the XYZUVW models; See Gagné et al. 2014a; third link), which are often close to the Solar's apex and anti-apex (black cross and plus signs). Thanks to Adric Riedel for help in the construction of these figures, and see some similar figures that he made in the 4th related link. Please cite the references indicated in the related links below if you use this figure.
DOI: 10.6084/m9.figshare.958957.v1
title: XYZUVW predicted positions for J1247-3812 and J1207-3900 vs TWA members.

description: These figures show the expected 3-dimensional XYZ and UVW positions of J1207-3900 and J1247-3812 (see Gagné et al. 2014b, first link below; red points; blue lines point to their projections on the 3 planes), compared to the XYZ positions of bona fide members from Malo et al. 2013 (see third link below; green points; their projections are also shown on the 3 planes, and only vertical lines pointing to their XY-or UV-plane projections are shown for clarity). The orange ellipsoid and its projections on the 3 planes represent the 1.5-sigma contour of the spatial model of the moving group in question. The statistical distance predictions from BANYAN II (see Gagné et al. 2014a, second link below) for RVs and distances were used to compute the XYZ or UVW of the two TWA candidates. Measurements of distance and RVs were used in the case of bona fide members. If you use any of these figures, please cite the 3 papers linked below.
DOI: 10.6084/m9.figshare.959999.v1
title: Previews for Montreal Spectral Library

description: This fileset contains the data and previews for all spectra in the Montreal Spectral Library (see link below).
DOI: 10.6084/m9.figshare.958951
title: Supplementary Information accompanying proteomics manuscript

description: These data files accompany the manuscript titled "From shell deposition to protein expression: An integrative assessment of ocean acidification impacts on a marine invertebrate". Figure S1. Representative indents made during micromechanical testing for the (A) 400 µatm and (B) 2800 µatm treatment. Figure S2. Glycogen content (µg glycogen per mg tissue) for oysters from the pCO2 treatments of 400, 800, and 2800 µatm. There is no difference in glycogen content among treatment groups. Figure S3. Heat maps of differentially expressed proteins annotated with protein names. Protein expression values have been log-transformed. Figure S4. Representation of key metabolic pathways that are significantly affected by ocean acidification (A), mechanical stress at low pCO2 (B), and mechanical stress at high pCO2 (C). This includes input files and instructions for viewing data in iPath2. Table S1. Raw and normalized (proportion) fatty acid data for 8 oysters each from 3 treatments: 400, 800, and 2800 µatm. Table S2. ProteinProphet output for each technical replicate. Table S3. Protein expression values (NSAF) for each oyster for the 1 616 proteins identified. Table S4. C. gigas proteins with associated SwissProt/UniProt-KB, Gene Ontology (GO), and GO Slim annotations. Table S5. Enriched biological processes for proteins &gt;2-fold differentially expressed in the stress responses to elevated pCO2 of 2800 µatm (“OA”), mechanical stress after a one month exposure to 400 µatm (“Mech Stress 400 µatm”), and mechanical stress after a one month exposure to 2800 µtam (“Mech Stress 2800 µatm”).
DOI: 10.6084/m9.figshare.958951.v1
title: Supplementary Information accompanying proteomics manuscript

description: These data files accompany the manuscript titled "From shell deposition to protein expression: An integrative assessment of ocean acidification impacts on a marine invertebrate". Figure S1. Representative indents made during micromechanical testing for the (A) 400 µatm and (B) 2800 µatm treatment. Figure S2. Glycogen content (µg glycogen per mg tissue) for oysters from the pCO2 treatments of 400, 800, and 2800 µatm. There is no difference in glycogen content among treatment groups. Figure S3. Heat maps of differentially expressed proteins annotated with protein names. Protein expression values have been log-transformed. Figure S4. Representation of key metabolic pathways that are significantly affected by ocean acidification (A), mechanical stress at low pCO2 (B), and mechanical stress at high pCO2 (C). This includes input files and instructions for viewing data in iPath2. Table S1. Raw and normalized (proportion) fatty acid data for 8 oysters each from 3 treatments: 400, 800, and 2800 µatm. Table S2. ProteinProphet output for each technical replicate. Table S3. Protein expression values (NSAF) for each oyster for the 1 616 proteins identified. Table S4. C. gigas proteins with associated SwissProt/UniProt-KB, Gene Ontology (GO), and GO Slim annotations. Table S5. Enriched biological processes for proteins &gt;2-fold differentially expressed in the stress responses to elevated pCO2 of 2800 µatm (“OA”), mechanical stress after a one month exposure to 400 µatm (“Mech Stress 400 µatm”), and mechanical stress after a one month exposure to 2800 µtam (“Mech Stress 2800 µatm”).
DOI: 10.6084/m9.figshare.959999.v2
title: Previews for Montreal Spectral Library

description: This fileset contains the data and previews for all spectra in the Montreal Spectral Library (see link below).
DOI: 10.6084/m9.figshare.958955.v1
title: Proper Motion of J1207-3900 and J1247-3816 vs TWA Members

description: This figure shows map of the position and proper motion of bona fide members to TW Hydrae (green arrows; Malo et al. 2013, second link), compared to those of J1247-3816 and J1207-3900 (red arrows; see Gagné et al. 2014b, first link). Each star's proper motion vector is prolongated into a great circle on the celestial sphere, to show that they converge in two points (the apex and anti-apex, blue circles are 1-sigma and 3-sigma apex calculated from the XYZUVW models; See Gagné et al. 2014a; third link), which are often close to the Solar's apex and anti-apex (black cross and plus signs). Thanks to Adric Riedel for help in the construction of these figures, and see some similar figures that he made in the 4th related link. Please cite the references indicated in the related links below if you use this figure.
DOI: 10.6084/m9.figshare.959999.v3
title: Previews for Montreal Spectral Library

description: This fileset contains the data and previews for all spectra in the Montreal Spectral Library (see link below).
DOI: 10.6084/m9.figshare.959999.v4
title: Previews for Montreal Spectral Library

description: This fileset contains the data and previews for all spectra in the Montreal Spectral Library (see link below).
DOI: 10.6084/m9.figshare.959999.v5
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v6
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v7
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v8
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v9
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v10
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v11
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v12
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.959999.v13
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.957635
title: Data and code for distal femoral papers (Gould 2014 and Gould in review)

description: Includes raw landmark input data for MorphoJ as well as classifier for 282 fossil and extant mammalian distal femora. Also includes Matlab code that was used to produce landmark data on distal femoral scans initially.
DOI: 10.6084/m9.figshare.959999.v15
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".
DOI: 10.6084/m9.figshare.957633
title: Classifiers for MorphoJ landmark data

description: These are the classifier variables (specimen number, genus, family, order, locomotor mode and age) associated with the landmark data. To be uploaded into MorphoJ after the landmark data.
DOI: 10.6084/m9.figshare.957634
title: Matlab code for landmark placement

description: This is the matlab code used to place landmars on surface models of the distal femur. Provided primarily for reference to deal with other structure.
DOI: 10.6084/m9.figshare.958785.v1
title: Gaussian Job Archive for C6H6Br2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.957632
title: Landmark data for morphoJ

description: These are the post sliding landmark data, formatted for MorphoJ input.
DOI: 10.6084/m9.figshare.957634.v1
title: Matlab code for landmark placement

description: This is the matlab code used to place landmars on surface models of the distal femur. Provided primarily for reference to deal with other structure.
DOI: 10.6084/m9.figshare.957635.v1
title: Data and code for distal femoral papers (Gould 2014 and Gould in review)

description: Includes raw landmark input data for MorphoJ as well as classifier for 282 fossil and extant mammalian distal femora. Also includes Matlab code that was used to produce landmark data on distal femoral scans initially.
DOI: 10.6084/m9.figshare.959999.v14
title: The Montreal Spectral Library

description: This fileset contains the raw and reduced data, as well as previews for all spectra in the Montreal Spectral Library (see link below). Please always cite the references in the "Reference" column when using these spectra. When you use parts or all of this spectral library in a publication, we would appreciate that you acknowledge it in the following way : "This research has benefitted from the Montreal Spectral Library, maintained by Jonathan Gagné at http://sites.google.com/site/mbderg/montreal-spectral-library".