cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vwjnkwxx4z.1
title: The RGD-binding Integrins αvβ6 and αvβ8 are Receptors for Mouse Adenovirus-1 and -3 Infection

description: Mammalian AdVs comprise more than ~350 types including over 100 human adenoviruses (HAdVs) and just three mouse AdV (MAdV). While most HAdVs initiate infection by high affinity/avidity binding of their fiber knob (FK) protein to either coxsackievirus AdV receptor (CAR), CD46 or desmoglein (DSG)-2, MAdV-1 (M1) infection requires arginine-glycine-aspartate (RGD) binding integrins. To identify the receptors mediating MAdV infection we generated five novel reporter viruses for MAdV-1/-2/-3 (M1, M2, M3) transducing permissive murine (m) CMT-93 cells, but not B16 mouse melanoma cells expressing mCAR, human (h) CD46 or hDSG-2. Recombinant M1 or M3 FKs cross-blocked M1 and M3 but not M2 infections. Profiling of murine and human cells expressing RGD-binding integrins suggested that αvβ6 and αvβ8 heterodimers are associated with M1 and M3 infections. Ectopic expression of mβ6 in B16 cells strongly enhanced M1 and M3 binding, infections and progeny productions comparable with mαvβ6-positive CMT-93 cells, whereas mβ8 expressing cells were more permissive to M1 than M3. Anti-integrin antibodies potently blocked M1 and M3 binding and infections of CMT-93 cells and hαvβ8-positive M000216 cells. Soluble integrin αvβ6, and synthetic peptides containing the RGDLXXL sequence derived from FK-M1, FK-M3 and foot and mouth disease virus coat protein potently interfered with M1/M3 infections, in agreement with high affinity interactions of FK-M1/FK-M3 with αvβ6/αvβ8, determined by surface plasmon resonance measurements. Molecular docking simulations of ternary complexes revealed a bent conformation of RGDLXXL-containing FK-M3 peptides on the subunit interface of αvβ6/β8, where the distal leucine residue dips into a hydrophobic pocket of β6/8, the arginine residue ionically engages αv aspartate215, and the aspartate residue coordinates a divalent cation in αvβ6/β8. Together, the RGDLXXL-bearing FKs are part of an essential mechanism for M1/M3 infection engaging murine and human αvβ6/8 integrins, which are also highly conserved in other mammals, and thus may favour cross-species virus transmission.
DOI: 10.17632/39wdhwdhyd.1
title: The Impact of Wind-Wave Coupling with WBLM on Coastal Storm Simulations

description: The data is saved with the python pickle module. One can use the following commend to read the data:
import pickle
f = open('data/exp_lon_lat_z0.pkl','rb')
obj=pickle.load(f)
f.close()
DOI: 10.17632/y6y6cg94dw.3
title: Concentration of the pore water ions and grain size of bottom sediments and subsea permafrost from the Buor-Khaya Bay

description: This set contains a data on ionic composition of the interstitial water of bottom sediments and subsea permafrost as an indicator of the sedimentation and sea water spreading within thawed strata. Based on measurements of concentration of sodium (Na+), potassium (K+), calcium (Ca2+), and magnesium (Mg2+) cations, chlorides (Cl–) and sulphates (SO42–) in water extracts from bottom sediments and subsea permafrost deposits from three boreholes a spatial difference in salinisation dynamics of thawed strata within the Buor-Khaya Bay was shown. A significant difference between permafrost and unfrozen sections was recorded. The vertical pattern of the macroions in the unfrozen segment was formed under the influence of subsea thawing of permafrost, while the permafrost section was formed under freshwater conditions and evolved under the thawing, and consequent sea water spreading. The significant compositional irregularity of ionic compositional patterns in the thawed deposits is caused by differences in the particle size of sediments and hydrodynamics of the Arctic basin, and also can be explained by Quaternary eustatic events on the East Siberian Arctic shelf. Lithology, grain size and hydrological regime were considered to be the most important factors controlling concentration of sea water salt to thawed sediments. Over the roof of subsea permafrost in the Ivashkina Lagoon, the pronounced salinity maximum (50 g/L of Cl–) of interstitial water was observed. Consisting of moss debris, this segment promotes the accumulation of dissolved pore water compounds due to its high porosity and subsequent thawing of frozen rock.
DOI: 10.17632/ws3cdn28n8.1
title: Harvard Forest CNDD seedling experiment 2019

description: To test the strength of density dependence and whether it affects seedling community diversity in a temperate forest, we experimentally planted 1200 seedlings of four ectomycorrhizal tree species beneath conspecific and heterospecific adults and tracked their survival and changes to the diversity of the planted seedling community. We found that experimental seedling mortality was always higher under conspecific adults, which increased seedling community diversity in one of six treatments.
DOI: 10.17632/zg8k3mchgx.3
title: Predicted distribution of the glass sponge Vazella pourtalesi on the Scotian Shelf and its persistence in the face of climatic variability

description: Emerald Basin on the Scotian Shelf off Nova Scotia, Canada, is home to a globally unique aggregation of the glass sponge Vazella pourtalesi, first documented in the region in 1889.  In 2009, Fisheries and Oceans Canada (DFO) implemented two Sponge Conservation Areas to protect these sponge grounds from bottom fishing activities. Together, the two conservation areas encompass 259 km2. In order to ascertain the degree to which the sponge grounds remain unprotected, we modelled the presence probability and predicted range distribution of V. pourtalesi on the Scotian Shelf using random forest modelling on presence-absence records.  With a high degree of accuracy the random forest model predicted the highest probability of occurrence of V. pourtalesi in the inner basins on the central Scotian Shelf, with lower probabilities at the shelf break and in the Fundian and Northeast Channels.  Bottom temperature was the most important determinant of its distribution in the model.  Although the two DFO Sponge Conservation Areas protect some of the more significant concentrations of V. pourtalesi, much of its predicted distribution remains unprotected (over 99%). Examination of the hydrographic conditions in Emerald Basin revealed that the V. pourtalesi sponge grounds are associated with a warmer and more saline water mass compared to the surrounding shelf. Reconstruction of historical bottom temperature and salinity in Emerald Basin revealed strong multi-decadal variability, with average bottom temperatures varying by 8˚C. We show that this species has persisted in the face of this climatic variability, possibly indicating how it will respond to future climate change.
DOI: 10.17632/vnhtxmc75y.1
title: SAD leaf rust of white oat

description: This dataset was used to validate a set of standard area diagrams for assessment of severity of leaf rust or crown rust (Puccinia coronata f.sp. avenae) of white oat. Ten raters assessed 55 leaves without aid and with a SAD.
DOI: 10.17632/6gvs94p6r2.4
title: R modeling code, high-speed video, sound files and other data from: Long- and short-range bimodal signals mediate mate location and recognition in yellow fever mosquitoes 

description: This data set is supplementary to the manuscript "Long- and short-range bimodal signals mediate mate location and recognition in yellow fever mosquitoes". This publication used high-speed video to demonstrate the wing flash phenomena in both laboratory populations of the yellow fever mosquito, Aedes aegypti, and field populations of dipterans. We also tested the attractiveness of flashing LED arrays as stand-ins for mosquito swarms. Additionally, we used LED arrays coupled with earbud speakers as swarm stand-ins. Using the LED arrays, we exposed Ae. aegypti and males of the northern house mosquito, Culex pipiens, to various frequencies and combinations of flashing lights and acoustic signals. The methods used to produce the data and other files are fully described in the main pulbication. The abstract for the publication is reproduced below.


"Mate location and mate selection behavior in diurnally-active yellow fever mosquitoes, Aedes aegypti, take place in mating swarms but the mechanisms underlying swarm formation and long-range detection of females by males remain largely unexplored. In high-speed video recordings we show that incident light reflects off the wings of swarming males, and in behavioral experiments we demonstrate that swarm formation and mate recognition are mediated, in part, by these wingbeat light flashes and by wingbeat sound signals that operate at long and short range, respectively. To test for range-dependent effects of these signals, we presented ‘mating swarms’ in form of two paired 8-LED assemblies that were fitted with micro-speakers and placed either well separated in a large space or side-by-side in a small space. In the large but not the small space, the LED assembly flashing light at the wingbeat frequency of females (665 Hz), and emitting their wingbeat sound (665 Hz), attracted and prompted 5.8-times more alightings by males than the LED assembly emitting constant light and wingbeat sound. In the small space, the LED assembly flashing light and emitting wingbeat sound induced 5.0-times more alightings by males than the LED assembly flashing light without wingbeat sound. The attractiveness of light flash signals to males increased with increasing numbers of signals but did not vary according to their wavelengths (UV or blue). Females responded to light flash signals of males. As predicted by the sensory drive theory, light flashes had no signal function for crepuscular house mosquitoes, Culex pipiens."


This dataset contains (1) sound files utilized in experiments, (2) spectra of LEDs and illumination sources used in bioassays, (3) files associated with measurements of mosquito wing spectra, (4) Raw data from each experiment, alongside R code used in statistical analysis, and (5) high-speed video and analysis. Further details can be found in the description or "read me.txt" files associated with each subfolder.
DOI: 10.17632/bfnw4pvp35.1
title: R-codes IL-32 promotes proliferation and oxidative phosphorylation and is expressed in a subgroup of myeloma patients with poor prognosis and an immature plasma cell profile

description: R-studio scripts for bioinformatic analysis in "IL-32 promotes proliferation and oxidative phosphorylation and is expressed in a subgroup of myeloma patients with poor prognosis and an immature plasma cell profile"
DOI: 10.17632/rwsvgmpr7y.1
title: Species Level Count matrix and Sample Data

description: This was a pilot study to evaluate the gut microbial signature in PAH. This is data from 28 pairs of patients (PAH and non-PAH control) who underwent shotgun metagenomics microbiome sequencing. We identified a significant relative deficiency of Lachnospiracea in PAH as compared to non-PAH control patients. This dataset contains species count matrix and sample metadata.
DOI: 10.17632/4hjt9dzcvd.1
title: Training dataset

description: Training data to train predictive models for electrical impedance tomography. The goal is to detect gas bubbles and crystals in liquid-filled tanks. The data contains 35,000 cases and is in Matlab variable format.
DOI: 10.17632/ndr92grbwv.1
title: Guidelines by the Department for the Treatment of Substance Abuse, Israeli Ministry of Health

description: Hebrew Language guidelines for inpatient and MAT in the context of COVID-19
DOI: 10.17632/gys44534bn.1
title: P63 expression and its relation to odontogenic epithelial cell proliferation in radicular cysts

description: P63 expression and its relation to odontogenic epithelial cell proliferation in radicular cysts
DOI: 10.17632/sv95c7ydpy.1
title: Dataset for Social and Psychological Effects of the COVID-19 Pandemic in Turkey

description: This data was collected to investigate how intolerance to distress and anxiety affects some of the behaviors that can be changed in response to the Covid-19 pandemic. This dataset comes from a survey of 2,868 people in Turkey about the effects of the Covid -19 pandemic. The dataset is ideal for studying how the Covid -19 pandemic shaped people's intolerance to distress and anxiety. The survey looked at personal cleaning habits, bank/credit card usage, online shopping, personal security, and stockpiling. The data also included whether an individual or a household member had been officially diagnosed with Covid-19 and socio-demographic data.
DOI: 10.17632/t359pdpcxy.1
title: Sharma_GCA_2021_Nitrous oxide and Cu_Data

description: Research Data for Cu role in denitrification in natural aquatic systems
DOI: 10.17632/22hpw2xn3x.1
title: JARE61 Waves in Ice Observations 

description: The 61st Japanese Antarctic Research Expedition (JARE61) departed from Narita, Japan on November 27 2019 and set sail on the Japanese Icebreaker, the Shirase, from the port of Fremantle in Australia, their destination Syowa Station, Antarctica. One of the key research projects of JARE61 was to study the Ocean-ice Boundary Interaction and Change around Antarctica. In support of this project and in collaboration with the University of Tasmania, Australia and National Institute of Water and Atmospheric Research, New Zealand, five wave ice sensors were deployed off the Sabrina coast during the inbound leg to the Syomwa Station. 

The aim of this project was to observe wave propagation in the marginal ice zone (MIZ). Each sensor performed on-board spectral analysis and data quality control. The data was returned via Iridium data packets. The instrumentation development, construction and deployment was funded through the Australian Research Council Discovery Project DP170103774. The science development and analysis was funded through New Zealand's National Institute of Water and Atmospheric Research Core Funding. The wave sensors were manufactured by P.A.S. Consultants P/L, Melbourne, Australia.

The sensors were deployed on the 9th and 10th of December 2019 along the longitude 120ºE. Three sensors were deployed along the ice edge, one was deployed in low sea ice concentration and another in high sea ice concentration. For all deployments, the sea ice primarily consisted of pancakes with gaps generally filled with frazil or brash ice. Wave spectra and spectral moments were captured over 11 minutes and returned via IRIDIUM Satellite. In total, 4402 wave records were captured over 6 months (from 10th December 2019 to 12th June 2020).
DOI: 10.17632/jhws2wyds5.1
title: Dataset of the 2019 Indonesian general election

description: This dataset contains all DPR Candidates for the 2019 Indonesian People's Representative Council election.
For the national level it contains almost 8000 candidates.

This is Indonesian government data and thus in the public domain.
DOI: 10.17632/2shgkwz6v3.1
title: Supplemental Table for: DESCRIBE-AD: A Novel Classification Framework for Atopic Dermatitis

description: Supplemental Table for: DESCRIBE-AD: A Novel Classification Framework for Atopic Dermatitis
DOI: 10.17632/jc5xp7dgtf.1
title: The supplementary data of the paper “Astragaloside IV alleviates Schwann cell injury in diabetic peripheral neuropathy by regulating microRNA-155-mediated autophagy”

description: The supplementary data of the paper “Astragaloside IV alleviates Schwann cell injury in diabetic peripheral neuropathy by regulating microRNA-155-mediated autophagy”.
DOI: 10.17632/7r4y4xwgkr.1
title: Meaning in Life of Chinese College Students: A Mixed-Methods Study（quantitative data ）

description: Meaning in Life of Chinese College Students: A Mixed-Methods Study（quantitative data ）
DOI: 10.17632/x6nhfzm9kw.3
title: Study on anti-cavitation performance of waterborne elastomer composite coating in 3.5%NaCl solution

description: The raw data for study on anti-cavitation performance of waterborne elastomer composite coating in 3.5%NaCl solution
DOI: 10.17632/hwssc4vvhn.2
title: The data for Wu et al. (2021)

description: The data for the Reply to comments by Muñoz-Carpena et al. on "Modeling slope rainfall-infiltration-runoff process with shallow water table during complex rainfall patterns"
DOI: 10.17632/s733mm3njb.1
title: Fatigue life prediction of aluminum alloy materials based on surface damage and internal defects

description: The effects of internal defects and surface damage on fatigue life of periodically damaged specimens are analyzed by means of microscopic computed tomography and microscopic observation. A three-dimensional reconstruction model based on surface damage and internal defects was established, which was confirmed by the experimental data of fatigue damage accumulation during the stages of damage, and a statistical regression model was established by using surface roughness and stress concentration coefficient of the specimens to predict fatigue life.
DOI: 10.17632/xrb5b2642r.3
title: Results of GC–MS analysis of volatiles extracted by mechanical shock crushing from minerals in MAR 

description: The data represent the results of the study of the composition of fluid inclusions in sulfides, anhydrites, and carbonates from sulfide and carbonate structures of hydrothermal fields of the Atlantic Ocean (Ashadze-1, Semenov-2, Krasnov, Rainbow, and Lost City), using pyrolysis-free gas chromatography-mass spectrometry.
DOI: 10.17632/ngntc2944b.1
title: Modeling the Dynamics of a Gyroscopic Rigid Rotor with Linear and Nonlinear Damping and Nonlinear Stiffness of the Elastic Support

description: This study analytically and numerically modeled the dynamics of a gyroscopic rigid rotor with linear and nonlinear cubic damping and nonlinear cubic stiffness of an elastic support. It has been shown that (i) joint linear and nonlinear cubic damping significantly suppresses the vibration amplitude (including the maximum) in the resonant velocity region and beyond it and (ii) joint linear and nonlinear cubic damping more effectively affects the boundaries of the bistability region by its narrowing than linear damping. A methodology is proposed for determining and identification the coefficients of nonlinear stiffness, linear damping, and nonlinear cubic damping of the support material, at which jump-like effects are eliminated. Damping also affects the stability of motion; if linear damping shifts the left boundary of the instability region towards large amplitudes and speeds of rotation of the shaft, then nonlinear cubic damping can completely eliminate it. The varying amplitude (VAM) method used to determine the nature of the system response, supplemented with the concept of "slow" time, which allows us to investigate and analyze the effect of nonlinear cubic damping and nonlinear rigidity of cubic order on the frequency response at a nonstationary resonant transition.
DOI: 10.17632/cd4f7j2hbh.2
title: Polyamines Control eIF5A Hypusination, TFEB Translation and Autophagy to Reverse B Cell Senescence

description: Original images of the published manuscript.
DOI: 10.17632/b33zrddfdh.1
title: Modeling the Dynamics of a Gyroscopic Rigid Rotor with Linear and Nonlinear Damping and Nonlinear Stiffness of the Elastic Support

description: This study analytically and numerically modeled the dynamics of a gyroscopic rigid rotor with linear and nonlinear cubic damping and nonlinear cubic stiffness of an elastic support. It has been shown that (i) joint linear and nonlinear cubic damping significantly suppresses the vibration amplitude (including the maximum) in the resonant velocity region and beyond it and (ii) joint linear and nonlinear cubic damping more effectively affects the boundaries of the bistability region by its narrowing than linear damping. A methodology is proposed for determining and identification the coefficients of nonlinear stiffness, linear damping, and nonlinear cubic damping of the support material, at which jump-like effects are eliminated. Damping also affects the stability of motion; if linear damping shifts the left boundary of the instability region towards large amplitudes and speeds of rotation of the shaft, then nonlinear cubic damping can completely eliminate it. The varying amplitude (VAM) method used to determine the nature of the system response, supplemented with the concept of "slow" time, which allows us to investigate and analyze the effect of nonlinear cubic damping and nonlinear rigidity of cubic order on the frequency response at a nonstationary resonant transition.
DOI: 10.17632/kcgzh2s5kx.1
title: Modeling the Dynamics of a Gyroscopic Rigid Rotor with Linear and Nonlinear Damping and Nonlinear Stiffness of the Elastic Support

description: This study analytically and numerically modeled the dynamics of a gyroscopic rigid rotor with linear and nonlinear cubic damping and nonlinear cubic stiffness of an elastic support. It has been shown that (i) joint linear and nonlinear cubic damping significantly suppresses the vibration amplitude (including the maximum) in the resonant velocity region and beyond it and (ii) joint linear and nonlinear cubic damping more effectively affects the boundaries of the bistability region by its narrowing than linear damping. A methodology is proposed for determining and identification the coefficients of nonlinear stiffness, linear damping, and nonlinear cubic damping of the support material, at which jump-like effects are eliminated. Damping also affects the stability of motion; if linear damping shifts the left boundary of the instability region towards large amplitudes and speeds of rotation of the shaft, then nonlinear cubic damping can completely eliminate it. The varying amplitude (VAM) method used to determine the nature of the system response, supplemented with the concept of "slow" time, which allows us to investigate and analyze the effect of nonlinear cubic damping and nonlinear rigidity of cubic order on the frequency response at a nonstationary resonant transition.
DOI: 10.17632/v38nbb9rtp.3
title: Dataset for characterization data of palladium alumina on activated biochar catalyst for hydrogenolysis reactions

description: Raw profiles and images were collected for the biochar, activated biochar, and metal-loaded activated biochar. The catalysts were characterized using XRD (Bruker D8 Discover), TGA (SDT Q600, T.A. Instruments), NH3–TPD (Micromeritics Autochem-2920), Pyridine diffuse reflectance infrared Fourier transform spectroscopy (DRIFT, Thermofisher Scientific NICOLET iS50 FTIR spectrometer), XPS (PHI5000 Version Probe III (ULVAC-PHI)), HRSEM (Hitachi S-4800) and HRTEM (JEM-2100 Plus, JEOL, Japan). 
The aim of this dataset is to provide open-source collection data on which characterization analysis was performed on the catalysts to develop innovative methods.
DOI: 10.17632/hs4r96vydz.1
title: Data for: A spectral element method for modelling streamer discharges in low-temperature atmospheric-pressure plasmas

description: This dataset contains the results of numerical experiments on the application of the spectral element method 
to modelling of streamer discharges in low-temperature atmospheric-pressure plasmas.