cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6290114.v1
title: Additional file 3: of Differential gene transcription across the life cycle in Daphnia magna using a new all genome custom-made microarray

description: Excel file with specific probes and genes differentially transcribed across life-stages. (XLSX 26161 kb)
DOI: 10.6084/m9.figshare.6290090
title: Additional file 2 of Comparison of software tools for kinetic evaluation of chemical degradation data

description: Additional file 2. Spreadsheet used for selection and overall ranking of the tools.
DOI: 10.6084/m9.figshare.6290090.v2
title: Additional file 2 of Comparison of software tools for kinetic evaluation of chemical degradation data

description: Additional file 2. Spreadsheet used for selection and overall ranking of the tools.
DOI: 10.6084/m9.figshare.6290090.v1
title: MOESM2 of Comparison of software tools for kinetic evaluation of chemical degradation data

description: Additional file 2. Spreadsheet used for selection and overall ranking of the tools.
DOI: 10.6084/m9.figshare.6290084
title: Additional file 2: of Differential gene transcription across the life cycle in Daphnia magna using a new all genome custom-made microarray

description: Excel file with specific genes which were not transcribed (Fluorescence below background) throughout the development stages. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.6290084.v1
title: Additional file 2: of Differential gene transcription across the life cycle in Daphnia magna using a new all genome custom-made microarray

description: Excel file with specific genes which were not transcribed (Fluorescence below background) throughout the development stages. (XLSX 89 kb)
DOI: 10.6084/m9.figshare.6290075
title: Additional file 1: of Evidence of the impact of systemic inflammation on neuroinflammation from a non-bacterial endotoxin animal model

description: Table S1. Analgesia measurement by von Frey filament at postoperative 24Â h. Figure S1. Activation of microglia in the brain from surgical mice. Representative confocal microphotographs presented the activation of Iba1+ microglia in the frontal cortex (M2 region, top boxes; sensory cortex, bottom boxes) and hippocampus induced by laparotomy. Figure S2. Activation of astrocyte in the frontal cortex from surgical mice. (a) Representative confocal microphotographs presented the activation of GFAP+ astrocyte in the motor cortex (M2: secondary motor cortex; AIV: agranular insular cortex, ventral part) on POD 14. (b) Representative confocal microphotographs presented the activation of GFAP+ astrocyte in the sensory cortex (aci: anterior commissure intrabulbar part; OV: olfactory ventricle (olfactory part of lateral ventricle)) induced by laparotomy on POD 14. (ZIP 27129Â kb)
DOI: 10.6084/m9.figshare.6290075.v1
title: Additional file 1: of Evidence of the impact of systemic inflammation on neuroinflammation from a non-bacterial endotoxin animal model

description: Table S1. Analgesia measurement by von Frey filament at postoperative 24Â h. Figure S1. Activation of microglia in the brain from surgical mice. Representative confocal microphotographs presented the activation of Iba1+ microglia in the frontal cortex (M2 region, top boxes; sensory cortex, bottom boxes) and hippocampus induced by laparotomy. Figure S2. Activation of astrocyte in the frontal cortex from surgical mice. (a) Representative confocal microphotographs presented the activation of GFAP+ astrocyte in the motor cortex (M2: secondary motor cortex; AIV: agranular insular cortex, ventral part) on POD 14. (b) Representative confocal microphotographs presented the activation of GFAP+ astrocyte in the sensory cortex (aci: anterior commissure intrabulbar part; OV: olfactory ventricle (olfactory part of lateral ventricle)) induced by laparotomy on POD 14. (ZIP 27129Â kb)
DOI: 10.6084/m9.figshare.6290069
title: Additional file 1: of Use of designed sequences in protein structure recognition

description: Table S1. List of Pfam families and the associated SCOP fold annotations obtained through mapping onto PDB entries. (XLSX 125Â kb)
DOI: 10.6084/m9.figshare.6290069.v1
title: Additional file 1: of Use of designed sequences in protein structure recognition

description: Table S1. List of Pfam families and the associated SCOP fold annotations obtained through mapping onto PDB entries. (XLSX 125Â kb)
DOI: 10.6084/m9.figshare.6290039
title: Additional file 8: of Integrative genomics approaches validate PpYUC11-like as candidate gene for the stony hard trait in peach (P. persica L. Batsch)

description: File S1. Full list of variants annotations and effects (as calculated with SNPEff tool) from whole genome sequencing assembly of 19 accessions within the hd locus on chromosome 6. Candidate variant on PpYUC11-like gene is highlighted in black; variants associated to DEGs in yellow; high-impact variants predicted by SNPEff in red. See text for variants filtering criteria. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6290039.v1
title: Additional file 8: of Integrative genomics approaches validate PpYUC11-like as candidate gene for the stony hard trait in peach (P. persica L. Batsch)

description: File S1. Full list of variants annotations and effects (as calculated with SNPEff tool) from whole genome sequencing assembly of 19 accessions within the hd locus on chromosome 6. Candidate variant on PpYUC11-like gene is highlighted in black; variants associated to DEGs in yellow; high-impact variants predicted by SNPEff in red. See text for variants filtering criteria. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.6289994
title: Additional file 1: of Risk factors for esophageal fistula in thoracic esophageal squamous cell carcinoma invading adjacent organs treated with definitive chemoradiotherapy: a monocentric case-control study

description: dataset. This dataset was used for analysis of patientsâ characteristics, calculating survival time by Kaplan-Meier methods, and estimating the odds ratio for the incidence of esophageal fistula in multivariate analysis. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.6289994.v1
title: Additional file 1: of Risk factors for esophageal fistula in thoracic esophageal squamous cell carcinoma invading adjacent organs treated with definitive chemoradiotherapy: a monocentric case-control study

description: dataset. This dataset was used for analysis of patientsâ characteristics, calculating survival time by Kaplan-Meier methods, and estimating the odds ratio for the incidence of esophageal fistula in multivariate analysis. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.6289904
title: Additional file 2: of A systematic review of the risk factors for clinical response to opioids for all-age patients with cancer-related pain and presentation of the paediatric STOP pain study

description: BMC Cancer.doc, Characteristics of the 74 studies included in the review. (RTF 506 kb)
DOI: 10.6084/m9.figshare.6289904.v1
title: Additional file 2: of A systematic review of the risk factors for clinical response to opioids for all-age patients with cancer-related pain and presentation of the paediatric STOP pain study

description: BMC Cancer.doc, Characteristics of the 74 studies included in the review. (RTF 506 kb)
DOI: 10.6084/m9.figshare.6289754
title: Additional file 1: of Rostral cranial fossa as a site for cerebrospinal fluid drainage – volumetric studies in dog breeds of different size and morphotype

description: Individuals value of AP, ZyZy, volRCF, volCC and volRCF/volCC ratio (RCF/CC). (XLS 20 kb)
DOI: 10.6084/m9.figshare.6289754.v1
title: Additional file 1: of Rostral cranial fossa as a site for cerebrospinal fluid drainage – volumetric studies in dog breeds of different size and morphotype

description: Individuals value of AP, ZyZy, volRCF, volCC and volRCF/volCC ratio (RCF/CC). (XLS 20 kb)
DOI: 10.6084/m9.figshare.6289706
title: Additional file 4: of Competence of mosquitoes native to the United Kingdom to support replication and transmission of Rift Valley fever virus

description: Table S1. Viral RNA and infectious viral titres within the bodies, legs and saliva of UK mosquitoes infected with RVFV. Mosquitoes were fed a blood meal containing 106 or 107 PFU/ml RVFV strain Lunyo or ZH501 and maintained at 20 or 25 Â°C. Results are based on the mean log10-transformed qRT-PCR results reported in genome equivalent copies (GEC) and plaque assay results reported in plaque forming units (PFU). Day 0 was excluded from the totals. Abbreviations: nt, not tested; n, number tested; dpi, day post-infection. Dose range based on infectious titres obtained in pre and post feed blood samples. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6289706.v1
title: Additional file 4: of Competence of mosquitoes native to the United Kingdom to support replication and transmission of Rift Valley fever virus

description: Table S1. Viral RNA and infectious viral titres within the bodies, legs and saliva of UK mosquitoes infected with RVFV. Mosquitoes were fed a blood meal containing 106 or 107 PFU/ml RVFV strain Lunyo or ZH501 and maintained at 20 or 25 Â°C. Results are based on the mean log10-transformed qRT-PCR results reported in genome equivalent copies (GEC) and plaque assay results reported in plaque forming units (PFU). Day 0 was excluded from the totals. Abbreviations: nt, not tested; n, number tested; dpi, day post-infection. Dose range based on infectious titres obtained in pre and post feed blood samples. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.6289682
title: Additional file 1: of TelNet - a database for human and yeast genes involved in telomere maintenance

description: The table lists the 1022 genes identified in the pan-cancer analyis described in the context of Fig. 4. These genes have either significant changes of gene expression in tumor over normal cells (p-value
DOI: 10.6084/m9.figshare.6289643
title: Additional file 1: of Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

description: Table S1. Dermacentor variabilis (n = 1053) were obtained from 31 states and provinces. We included a subset (n = 491), which represents all D. variabilis that produced data for â Ľ 1 analysis (cox1 phylogeny, 16S phylogeny, Francisella-like endosymbiont detection and 16S phylogeny, Rickettsia spp. detection and OmpA phylogeny, and Coxiella burnetii detection). A subset were sequenced at cox1 (cox1 D.v. , n = 332), and/or 16S (16S D.v. , n = 32). We also include ticks that were positive and/or sequenced at three species targets: Francisella-like endosymbiont 16S (16SE, n = 257), Rickettsia OmpA ([R], n = 29), and C. burnetii ([C], n = 2). (XLSX 67 kb)
DOI: 10.6084/m9.figshare.6289643.v1
title: Additional file 1: of Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

description: Table S1. Dermacentor variabilis (n = 1053) were obtained from 31 states and provinces. We included a subset (n = 491), which represents all D. variabilis that produced data for â Ľ 1 analysis (cox1 phylogeny, 16S phylogeny, Francisella-like endosymbiont detection and 16S phylogeny, Rickettsia spp. detection and OmpA phylogeny, and Coxiella burnetii detection). A subset were sequenced at cox1 (cox1 D.v. , n = 332), and/or 16S (16S D.v. , n = 32). We also include ticks that were positive and/or sequenced at three species targets: Francisella-like endosymbiont 16S (16SE, n = 257), Rickettsia OmpA ([R], n = 29), and C. burnetii ([C], n = 2). (XLSX 67 kb)
DOI: 10.6084/m9.figshare.6289634
title: Additional file 2: of Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation

description: Table S2. OTU Table. (XLSX 1328Â kb)
DOI: 10.6084/m9.figshare.6289634.v1
title: Additional file 2: of Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation

description: Table S2. OTU Table. (XLSX 1328Â kb)
DOI: 10.6084/m9.figshare.6289619
title: Additional file 1: of Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation

description: Table S1. Sample sequence parameters. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.6289619.v1
title: Additional file 1: of Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation

description: Table S1. Sample sequence parameters. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.6289532
title: Table S2 The genes of the selective regions in Wushen horse.xlsx

description: The genes of the selective regions in Wushen horse
DOI: 10.6084/m9.figshare.6289532.v1
title: Table S2 The genes of the selective regions in Wushen horse.xlsx

description: The genes of the selective regions in Wushen horse
DOI: 10.6084/m9.figshare.6289523
title: Table S1 The genes of the selective regions in Abaga horse.xlsx

description: The genes of the selective regions in Abaga horse
DOI: 10.6084/m9.figshare.6289523.v1
title: Table S1 The genes of the selective regions in Abaga horse.xlsx

description: The genes of the selective regions in Abaga horse
DOI: 10.6084/m9.figshare.6289121
title: Litter decomposition in China.xlsx

description: The feedback between litter and climate is partly determined by litter turnover time (LTT) that is affected by climate, litter and soil properties. However, the earth system models that simulate C-climate feedbacks are largely untested with respect to LTT and the interplay between these variables and LTT are rarely quantified. To investigate the direct and indirect effects of climate variables, litter quality, and soil properties on LTT, we obtained 1378 LTTs and their respective environmental variables from 246 published papers, which spanned forest, grassland, and cropland ecosystems. We analyzed the spatial pattern of LTT and investigated the direct and indirect effects of these variables on LTT. The mean LTT was longest in forest ecosystems, followed by grassland and cropland ecosystems. LLT varied significantly according to litter tissues (root, stem, and leaf), litter species, and climate zones. Mean annual temperature (MAT) and precipitation (MAP) best predicted LTT when we used negative exponential equations. Among these variables, the most influential variable on LTT was MAT for the forest litter and cropland litter, and MAP for grassland litter. Climate (MAT and MAP) accounted for more than half of the relative influence on LTT, followed by litter quality (litter tissues, carbon to nitrogen ratio of litter, and lignin content), and soil properties (soil organic carbon and sand content). Path analysis identified MAT negatively affected LTT both directly and indirectly through decreasing litter quality and soil properties. MAP negatively affected LTT by decreasing lignin content. Lignin content positively affected LTT both directly and indirectly through increasing soil organic carbon. <i>Synthesis</i>. Our results suggest that climate variables has contrasting effects on LTT and could mediate litter quality and soil properties to control LTT. These results highlight important implications for climate-smart soil management and aid the reliable model predictions.
DOI: 10.6084/m9.figshare.6289085.v1
title: Medical Image Segmenter (MIS)

description: Medical Image Segmenter (MIS) is a software tool for semi-manual segmentation of 3D medical images in the DICOM format. The image should be acquired along the axial direction. <br>MIS facilitates the manual segmentation of medical images by using a segmentation algorithm based on thresholding and connected-component analysis.<br>
DOI: 10.6084/m9.figshare.6289085.v2
title: Medical Image Segmenter (MIS)

description: Medical Image Segmenter (MIS) is a software tool for semi-manual segmentation of 3D medical images in the DICOM format. The image should be acquired along the axial direction. <br>MIS facilitates the manual segmentation of medical images by using a segmentation algorithm based on thresholding and connected-component analysis.<br>
DOI: 10.6084/m9.figshare.6289076
title: predictionFeatures.mat

description: This dataset has features of some subjects for prediction AMD.
DOI: 10.6084/m9.figshare.6289076.v1
title: predictionFeatures.mat

description: This dataset has features of some subjects for prediction AMD.
DOI: 10.6084/m9.figshare.6289037
title: Metadata file for combined microbiota in pups and dams

description: Metadata of combined pup and dam microbiota from two experiments
DOI: 10.6084/m9.figshare.6289037.v1
title: Metadata file for combined microbiota in pups and dams

description: Metadata of combined pup and dam microbiota from two experiments
DOI: 10.6084/m9.figshare.6289034
title: OTU table Expt 1 and 2 Pups and Dams

description: Biom table from Expt 1 and 2 containing both pups and dams
DOI: 10.6084/m9.figshare.6289028
title: Metadata Combined dams stool microbiota

description: Metadata of stool microbiota in dams for two experiments
DOI: 10.6084/m9.figshare.6289028.v1
title: Metadata Combined dams stool microbiota

description: Metadata of stool microbiota in dams for two experiments
DOI: 10.6084/m9.figshare.6289025
title: Combined dams OTU table

description: OTU table of dams across experiments
DOI: 10.6084/m9.figshare.6289025.v1
title: Combined dams OTU table

description: OTU table of dams across experiments
DOI: 10.6084/m9.figshare.6289022
title: Metadata pups combined stool microbiota

description: Metadata for combined stool microbiota in pups
DOI: 10.6084/m9.figshare.6289022.v1
title: Metadata pups combined stool microbiota

description: Metadata for combined stool microbiota in pups
DOI: 10.6084/m9.figshare.6289019
title: OTU table of Combined Pups stool microbiota

description: Pups stool microbiota combined across repeat experiments
DOI: 10.6084/m9.figshare.6289019.v1
title: OTU table of Combined Pups stool microbiota

description: Pups stool microbiota combined across repeat experiments
DOI: 10.6084/m9.figshare.6289016
title: The role of bipedal mechanical loading history on relative changes in hindlimb length

description: Body mass, limb length, and percentage change in limb length in a bipedal rat model under different mechanical loading regimes over a 12-week experiment
DOI: 10.6084/m9.figshare.6289016.v1
title: The role of bipedal mechanical loading history on relative changes in hindlimb length

description: Body mass, limb length, and percentage change in limb length in a bipedal rat model under different mechanical loading regimes over a 12-week experiment
DOI: 10.6084/m9.figshare.6289010
title: OTU table Pups only Combined Expts

description: Combining pups stool microbiota across experiment to control cage effect
DOI: 10.6084/m9.figshare.6289010.v1
title: OTU table Pups only Combined Expts

description: Combining pups stool microbiota across experiment to control cage effect
DOI: 10.6084/m9.figshare.6288974
title: Anolis Sagrei SDMN

description: Brown anoles were placed into Reproductive, Agonistic, and Control conditions. Behaviors were scored. Neural activation (Fos imunoreactivity) in social decision-making network was assessed. Neurotransmitter- and neuropeptide-producing neurons were examined for colocalization with Fos.
DOI: 10.6084/m9.figshare.6288968
title: Data_for_figures_and_stats_V2.xlsx

description: This excel spreadsheet has 4 sheets for the figures and statistical analysis generated for this paper.<br>Version 2 changes:Corrected Pennsylvania county NME count and NME_rate data which was inadvertently doubled.Version 3 changes:Removed <br><br><br>Publication title:<b>The state of the anti-vaccine movement in the United States: A focused examination of nonmedical exemptions in states and counties</b>
DOI: 10.6084/m9.figshare.6288968.v1
title: Data_for_figures_and_stats.xlsx

description: This excel spreadsheet has 4 sheets for the figures and statistical analysis generated for this paper.<br><br>Publication title:<b>The state of the anti-vaccine movement in the United States: A focused examination of nonmedical exemptions in states and counties</b>
DOI: 10.6084/m9.figshare.6288968.v2
title: Data_for_figures_and_stats.xlsx

description: This excel spreadsheet has 4 sheets for the figures and statistical analysis generated for this paper.<br><br>Publication title:<b>The state of the anti-vaccine movement in the United States: A focused examination of nonmedical exemptions in states and counties</b>
DOI: 10.6084/m9.figshare.6288947
title: Old principles, persisting challenges: Maternal health care market alignment in Mexico in the search for UHC

description: Important Notice<br> Under request of PlosONE and in order to contribute to transparency and replicability of research, the authors of the study entitled “Old principles, persisting challenges: Maternal health care market alignment in Mexico in the search for UHC”, made the data available. Any other use than exploring or replicating the results of the above-mentioned paper is not authorized and shall not be used without previous authorization of the investigators. If you are interested in analyzing this database for original research purposes please contact Edson Serván Mori (corresponding author eservan@insp.mx).
DOI: 10.6084/m9.figshare.6288947.v1
title: Old principles, persisting challenges: Maternal health care market alignment in Mexico in the search for UHC

description: Important Notice<br> Under request of PlosONE and in order to contribute to transparency and replicability of research, the authors of the study entitled “Old principles, persisting challenges: Maternal health care market alignment in Mexico in the search for UHC”, made the data available. Any other use than exploring or replicating the results of the above-mentioned paper is not authorized and shall not be used without previous authorization of the investigators. If you are interested in analyzing this database for original research purposes please contact Edson Serván Mori (corresponding author eservan@insp.mx).
DOI: 10.6084/m9.figshare.6288788
title: Bioinformatic pipeline and perl scripts

description: Contains the commands process paired end Illumina reads generated by our strategy, and the perl scripts that process some of the data.<br><br>
DOI: 10.6084/m9.figshare.6287759
title: Mass spectrometric data from a preliminary processing try

description: These are the results of a first preliminary bioinformatic processing of mass spectrometric data from peptide extracts of three acoel species. These results belong to the project "Thiel, Daniel; Hejnol, Andreas (2018): Supporting Material: Neuropeptides in Xenacoelomorpha. figshare. Collection."
DOI: 10.6084/m9.figshare.6287708.v1
title: Determination of fipronil and its metabolites in chicken egg, muscle and cake by a modified QuEChERS method coupled with LC-MS/MS

description: An easy-to-use method for determining the levels of fipronil and its metabolites (fipronil-desulfinyl, fipronil-sulfone and fipronil-sulfide) in chicken egg, muscle and cake was developed and validated using a modified quick, easy, cheap, effective, rugged, and safe (QuEChERS) approach coupled with liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis. The samples were extracted using acetonitrile, salted out with sodium chloride at -20 °C, and then purified by combined PSA and C18 phases and anhydrous magnesium sulfate. The recoveries were 80.4–119% with relative standard deviations (RSDs) &lt; 10% for the different matrixes. The validated method was used to analyze the target compounds in 214 real samples collected in Beijing. The metabolite fipronil-sulfone was detected in most of the samples and was identified as the main residue in the egg and cake. The method was validated using a proficiency test for fipronil in products of animal origin published by Wageningen University & Research in 2017.