cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5639340
title: Intra-cluster summed galaxy colors

description: Inter-cluster summed galaxy colors and other cluster properties for TNG300-1, SDSS NYU VAGC, and Buzzard Flock low redshift galaxies. <pre>'Hmass': log10(Cluster mass/M_sun) TNG: M_200c, BZZ: M_vir, SDSS: M_vir 'N_gal': Number of galaxies in Cluster 'Z': Redshift 'rich_cts','rich_dsc': Richness, continuous and discrete 'mag_gap': Magnitude gap 'g_cen','r_cen','i_cen','z_cen': Magnitudes for central galaxies 'sum_g','sum_r','sum_i','sum_z': Summed Magntiudes for total cluster population 'sum_g_sat', 'sum_r_sat', 'sum_i_sat', 'sum_z_sat': Summed Magntiudes for sattelite cluster population </pre>
DOI: 10.5281/zenodo.5778195
title: Endosperm preferentially expressed genes highlight unique activities in the wheat filling endosperm

description: <strong>Supplementary Table</strong>
DOI: 10.6084/m9.figshare.17161292
title: Supplementary File 4. JBI Critical Appraisal Checklists for Text and Opinion Papers

description: JBI Critical Appraisal Checklists for Text and Opinion Papers.
DOI: 10.6084/m9.figshare.17161292.v2
title: Supplementary File 4. JBI Critical Appraisal Checklists for Text and Opinion Papers

description: JBI Critical Appraisal Checklists for Text and Opinion Papers.
DOI: 10.6084/m9.figshare.17161292.v1
title: Supplementary File 4. JBI Checklists

description: JBI Critical Appraisal Checklists for Text and Opinion Papers.
DOI: 10.5281/zenodo.5778143
title: data for modeling scale of representation of heterogeneity on simulated salinity and saltwater circulation in coastal aquifers

description: This is the modeling data for modeling scale of representation of heterogeneity on simulated salinity and saltwater circulation in coastal aquifers. We setup a series of SEAWAT models to see the scale-dependent heterogeneity in simulations of saltwater circulation and cautions
DOI: 10.5281/zenodo.5778142
title: data for modeling scale of representation of heterogeneity on simulated salinity and saltwater circulation in coastal aquifers

description: This is the modeling data for modeling scale of representation of heterogeneity on simulated salinity and saltwater circulation in coastal aquifers. We setup a series of SEAWAT models to see the scale-dependent heterogeneity in simulations of saltwater circulation and cautions
DOI: 10.4121/16843510
title: Data underlying the paper: "Imaging moiré deformation and dynamics in twisted bilayer graphene".

description: Data underlying the paper: "Imaging moiré deformation and dynamics in twisted bilayer graphene" (T.A. de Jong et al, 2021).<br>Experimental data was obtained using the Low Energy Electron Microscope ESCHER at Leiden University. (Except for the AFM data, which was recorded using the JPK NanoWizard 3 at Leiden University).<br>The LEEM data in this dataset is processed data, i.e. detector corrected, drift corrected and/or stitched together into an overview. The raw sensor data is available from the corresponding authors upon reasonable request.<br><br>Python code to analyse the data and generate the figures as presented in the paper can be found at https://doi.org/10.5281/zenodo.5713908.<br><br>More information in README.md<br>
DOI: 10.34740/kaggle/dsv/2924295
title: Covid-19 in Singapore : Latest Detailed Data
DOI: 10.5281/zenodo.5646625
title: reduced permeability

description: # permeability reduction Matlab scripts to simulate the reduced permeability of porous granular media due to ice or hydrate. The functions are organized in two classes, including:<br> - `soil.m`. Calculate the soil freezing curves using a Monte Carlo method on synthetic soil models.<br> - `frw.m`. Calculate the permeabilities of the synthetic soil models, ice-free or ice-bearing, and compare the results against published models and measurements.<br> - `duct.m`. Examples showing the calculations in straight ducts of simple cross-sections. Parameters and data for calculations are in:<br> - `param.json`. All relevant parameters.<br> - `data/conductivity.xlsx`. Digitized measurements used for validation.<br> - `data/kr_finney.mat`. Simulated permeability reduction of Finney pack.<br> - `data/mc`. Simulated Monte Carlo results to calculate the soil freezing curves.<br> - `data/deposit`. Synthetic soil models, including the mono-dispersed Finney pack, and poly-dispersed synthetic soil. For details of the code, refer to the paper *Estimating permeability of partially frozen soil using floating random walks* published in Water Resources Research. This repository can also be found on GitLab.
DOI: 10.5281/zenodo.5778299
title: Supplementary materials used for the research to predict phase separation in protein chains

description: This is a collection of all the data, codes and metadata that were used for the research titled: 'Sequence based prediction of protein phase separation into disordered condensates using machine learning'.
DOI: 10.5281/zenodo.5778298
title: Supplementary materials used for the research to predict phase separation in protein chains

description: This is a collection of all the data, codes and metadata that were used for the research titled: 'Sequence based prediction of protein phase separation into disordered condensates using machine learning'.
DOI: 10.15121/1776598
title: Utah FORGE: Phase 3 Magnetotelluric (MT) Data

description: New high-quality tensor MT data at 122 sites, including the vertical magnetic field and utilizing ultra-remote referencing, have been acquired over the Utah FORGE project area. The results will be used to delineate the densities of faults and fractures in crystalline basement rocks, to define the heat sources, and to derive baseline 3D resistivity structure for later MT monitoring of temporal changes in resistivity structure following well stimulation in the EGS reservoir. There are three files here related to Utah FORGE magnetotelluric (MT) data acquisition and processing. The FORGE MT EDIs zip file contains the observed MT responses in industry-standard EDI format. For each site, there is an EDI response file that utilized a local independent reference for noise cancellation, and a file that utilized a distant reference cancelling noise associated with the DC transmission line of the Delta IPP passing down the west side of Milford Valley. These two site files could be merged as appropriate. The FORGE Model Cell Center file contains the model volume of the 3D Forge MT inversion for characterizing the resistivity structure in the project area. It was derived using finite element inversion methodology described in Wannamaker et al, in the attached FORGE Phase3 Geophysics paper, from the MT observation EDI files. It is ASCII format (.dat) and entries are defined at top of the file in a simple x-y-z-Rho listing in UTM coordinates. The element layers drape the topography so the Rho value layers are not purely horizontal slices. This greatly simplifies the listing.
DOI: 10.6084/m9.figshare.17193206.v1
title: F1000 - The effect of corporate social responsibility on Malaysian financial institutions' dividend payout

description: The corporate social responsibility (CSR) disclosure was made mandatory in Malaysia in 2007 with the introduction of the CSR Framework by Bursa Malaysia. Since then, the practice of CSR disclosure is growing, as Malaysia joins global efforts towards sustainable development. Despite of increased researches on CSR; there are limited studies to assess the relationship of specific dimensions – environmental, community, workplace and marketplace, towards dividend payout, which is crucial to investment and corporate finance decision making.
DOI: 10.6084/m9.figshare.17193206
title: F1000 - The effect of corporate social responsibility on Malaysian financial institutions' dividend payout

description: The corporate social responsibility (CSR) disclosure was made mandatory in Malaysia in 2007 with the introduction of the CSR Framework by Bursa Malaysia. Since then, the practice of CSR disclosure is growing, as Malaysia joins global efforts towards sustainable development. Despite of increased researches on CSR; there are limited studies to assess the relationship of specific dimensions – environmental, community, workplace and marketplace, towards dividend payout, which is crucial to investment and corporate finance decision making.
DOI: 10.6084/m9.figshare.14870829
title: The Effect of Corporate Social Responsibility on Malaysian Financial Instituions' Dividend Payout

description: The study involved 32 public listed finance companies in Malaysia as of 2017. It deployed data from annual reports and databases. In addition, the survey carried out the content analysis to measure the corporate social responsibility disclosure score, and dividend payout was calculated from the database.
DOI: 10.6084/m9.figshare.14870829.v1
title: The Effect of Corporate Social Responsibility on Malaysian Financial Instituions' Dividend Payout

description: The study involved 32 public listed finance companies in Malaysia as of 2017. It deployed data from annual reports and databases. In addition, the survey carried out the content analysis to measure the corporate social responsibility disclosure score, and dividend payout was calculated from the database.
DOI: 10.25345/c53k4t
title: MassIVE MSV000088559 - An adipose lncRAP2 - Igf2bp2 complex enhances adipogenesis and energy expenditure by stabilizing target mRNAs
title: lncRAP2 is a conserved cytoplasmic lncRNA enriched in adipose tissue and required for adipogenesis. Using purification and in vivo interactome analyses, we show that lncRAP2 forms complexes with proteins that stabilize mRNAs and modulate translation, among them Igf2bp2. Surveying transcriptome-wide Igf2bp2 client mRNAs in white adipocytes reveals selective binding to mRNAs encoding adipogenic regulators and energy expenditure effectors, including Adiponectin. These same target proteins are downregulated when either Igf2bp2 or lncRAP2 is downregulated, hindering adipocyte lipolysis. Proteomics and ribosome profiling show this occurs predominantly through mRNA accumulation, as lncRAP2-Igf2bp2 complex binding does not impact translation efficiency. Phenome-wide association studies reveal specific associations of genetic variants within both lncRAP2 and Igf2bp2 with body mass and type 2 diabetes, and both lncRAP2 and Igf2bp2 are suppressed in adipose depots of obese and diabetic individuals. Thus, the lncRAP2-Igf2bp2 complex potentiates adipose development and energy expenditure and is associated with susceptibility to obesity-linked diabetes.
DOI: 10.15468/gvecs9
title: A new species of Draconarius Ovtchinnikov, 1999 (Araneae, Agelenidae) from northeastern Pakistan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zamani, Alireza (2021): A new species of Draconarius Ovtchinnikov, 1999 (Araneae, Agelenidae) from northeastern Pakistan. Evolutionary Systematics 5 (2): 359-362, DOI: http://dx.doi.org/10.3897/evolsyst.5.76987, URL: http://dx.doi.org/10.3897/evolsyst.5.76987
DOI: 10.15468/v2ghw7
title: Vicia mingyueshanensis (Fabeae, Papilionoideae, Fabaceae), a new species from western Jiangxi, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xiao, Zhi-Yong, Li, Xiao-Chun, Luo, Ying, Zeng, Chuan-Sheng, Qiu, Bang-Gui, Cao, Fu-Liang (2021): Vicia mingyueshanensis (Fabeae, Papilionoideae, Fabaceae), a new species from western Jiangxi, China. PhytoKeys 187: 71-76, DOI: http://dx.doi.org/10.3897/phytokeys.187.71960, URL: http://dx.doi.org/10.3897/phytokeys.187.71960
DOI: 10.15468/8xt9n3
title: Typification of 14 names in the Dianthus virgineus group (Caryophyllaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Domina, Gianniantonio, Astuti, Giovanni, Bacchetta, Gianluigi, Barone, Giulio, Resetnik, Ivana, Terlevic, Ana, Thiebaut, Melanie, Peruzzi, Lorenzo (2021): Typification of 14 names in the Dianthus virgineus group (Caryophyllaceae). PhytoKeys 187: 1-14, DOI: http://dx.doi.org/10.3897/phytokeys.187.75534, URL: http://dx.doi.org/10.3897/phytokeys.187.75534
DOI: 10.15468/rufry9
title: New and poorly known " araphid " diatom species (Bacillariophyta) from regions near Lake Titicaca, South America and a discussion on the continued use of morphological characters in " araphid " diatom taxonomy

description: This dataset contains the digitized treatments in Plazi based on the original journal article Morales, Eduardo A., Wetzel, Carlos E., Ector, Luc (2021): New and poorly known " araphid " diatom species (Bacillariophyta) from regions near Lake Titicaca, South America and a discussion on the continued use of morphological characters in " araphid " diatom taxonomy. PhytoKeys 187: 23-70, DOI: http://dx.doi.org/10.3897/phytokeys.187.73338, URL: http://dx.doi.org/10.3897/phytokeys.187.73338
DOI: 10.15468/v85ewf
title: Primulina scutellifolia, a new species of Gesneriaceae from southern Vietnam

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vu, Ngoc Long, Nguyen, Tran Quoc Trung, Tran, Gioi, Nguyen, Quoc Dat, Luu, Hong Truong (2021): Primulina scutellifolia, a new species of Gesneriaceae from southern Vietnam. PhytoKeys 187: 15-21, DOI: http://dx.doi.org/10.3897/phytokeys.187.77856, URL: http://dx.doi.org/10.3897/phytokeys.187.77856
DOI: 10.6084/m9.figshare.17193877
title: Additional file 1 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 1. Excel files ROSES protocol filed.
DOI: 10.6084/m9.figshare.17193877.v1
title: Additional file 1 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 1. Excel files ROSES protocol filed.
DOI: 10.6084/m9.figshare.17193880
title: Additional file 2 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 2. Search string evolution and estimating comprehensiveness of the search.
DOI: 10.6084/m9.figshare.17193880.v1
title: Additional file 2 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 2. Search string evolution and estimating comprehensiveness of the search.
DOI: 10.6084/m9.figshare.17193883
title: Additional file 3 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 3. Test list of articles for assessing comprehensiveness.
DOI: 10.6084/m9.figshare.17193883.v1
title: Additional file 3 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 3. Test list of articles for assessing comprehensiveness.
DOI: 10.6084/m9.figshare.17193886
title: Additional file 4 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 4. Spreadsheet outlining the meta-data extraction methods.
DOI: 10.6084/m9.figshare.17193886.v1
title: Additional file 4 of What evidence exists on how changes in marine ecosystem structure and functioning affect ecosystem services delivery? A systematic map protocol

description: Additional file 4. Spreadsheet outlining the meta-data extraction methods.
DOI: 10.6084/m9.figshare.17193940
title: Additional file 2 of Transcriptomic analysis of resistance and short-term induction response to pyrethroids, in Anopheles coluzzii legs

description: Additional file 2 : Table S1. Overview of differentially expressed (up-regulated and down-regulated) genes in mosquito leg compared to whole body. Table S2. Overview of differentially expressed (up-regulated and down-regulated) genes in VK7-HR (resistant) compared to both susceptible strains, VK7-LR and N’Gousso. Table S3. Overview of differentially expressed (up-regulated and down-regulated) genes in VK7-HR after 1-h deltamethrin exposure (VK7-IN). Table S4. Overview of commonly differentially expressed genes in constitutive (VK7 HR) and Induced state (VK7 IN).
DOI: 10.6084/m9.figshare.17193940.v1
title: Additional file 2 of Transcriptomic analysis of resistance and short-term induction response to pyrethroids, in Anopheles coluzzii legs

description: Additional file 2 : Table S1. Overview of differentially expressed (up-regulated and down-regulated) genes in mosquito leg compared to whole body. Table S2. Overview of differentially expressed (up-regulated and down-regulated) genes in VK7-HR (resistant) compared to both susceptible strains, VK7-LR and N’Gousso. Table S3. Overview of differentially expressed (up-regulated and down-regulated) genes in VK7-HR after 1-h deltamethrin exposure (VK7-IN). Table S4. Overview of commonly differentially expressed genes in constitutive (VK7 HR) and Induced state (VK7 IN).
DOI: 10.6084/m9.figshare.8279948
title: Additional file 5 of USP13 functions as a tumor suppressor by blocking the NF-kB-mediated PTEN downregulation in human bladder cancer

description: Table S1. qPCR primers and shRNA sequences used in the study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8279948.v2
title: Additional file 5 of USP13 functions as a tumor suppressor by blocking the NF-kB-mediated PTEN downregulation in human bladder cancer

description: Table S1. qPCR primers and shRNA sequences used in the study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8279948.v1
title: Additional file 5: of USP13 functions as a tumor suppressor by blocking the NF-kB-mediated PTEN downregulation in human bladder cancer

description: Table S1. qPCR primers and shRNA sequences used in the study. (XLSX 9 kb)
DOI: 10.5281/zenodo.5778324
title: AA-Score: a New Scoring Function Based on Amino Acid Specific Interaction for Molecular Docking

description: The protein-ligand scoring function plays an important role in computer-aided drug discovery, which is heavily used in virtual screening and lead optimization. In this study, we developed a new empirical protein-ligand scoring function, which is a linear combination of empirical energy components, including hydrogen bond, van der Waals, electrostatic, hydrophobic, π-stacking, π-cation, and metal-ligand interaction. Different from previous empirical scoring functions, AA-Score uses several amino acid-specific empirical interaction components. We tested AA-Score on several test sets. The resulting performance shows AA-Score performs well on scoring, docking, and ranking compared with other widely used traditional scoring functions. Our results suggest that AA-Score gains substantial improvements from using detailed protein-ligand interaction components. Besides, we developed an easy-to-use tool to analyze protein-ligand interaction fingerprint and predict binding affinity using AA-Score.
DOI: 10.5281/zenodo.5778304
title: AA-Score: a New Scoring Function Based on Amino Acid Specific Interaction for Molecular Docking

description: The protein-ligand scoring function plays an important role in computer-aided drug discovery, which is heavily used in virtual screening and lead optimization. In this study, we developed a new empirical protein-ligand scoring function, which is a linear combination of empirical energy components, including hydrogen bond, van der Waals, electrostatic, hydrophobic, π-stacking, π-cation, and metal-ligand interaction. Different from previous empirical scoring functions, AA-Score uses several amino acid-specific empirical interaction components. We tested AA-Score on several test sets. The resulting performance shows AA-Score performs well on scoring, docking, and ranking compared with other widely used traditional scoring functions. Our results suggest that AA-Score gains substantial improvements from using detailed protein-ligand interaction components. Besides, we developed an easy-to-use tool to analyze protein-ligand interaction fingerprint and predict binding affinity using AA-Score.
DOI: 10.6084/m9.figshare.17193970
title: Additional file 14 of Estimating prevalence of human traits among populations from polygenic risk scores

description: Additional file 14: Script used for SNP pruning method.
DOI: 10.6084/m9.figshare.17193970.v1
title: Additional file 14 of Estimating prevalence of human traits among populations from polygenic risk scores

description: Additional file 14: Script used for SNP pruning method.
DOI: 10.6084/m9.figshare.17193973
title: Additional file 15 of Estimating prevalence of human traits among populations from polygenic risk scores

description: Additional file 15: Table S1. Lactase persistence full data set. SNP rs number and minor allele are included, as well as the r2 values from the sensitivity analysis. The columns headed with the 1000 Genomes population codes are the allele frequencies for each SNP in those populations. The SNPs are listed in order of removal in the sensitivity analysis. Table S2. Melanoma full data set. SNP rs number and minor allele are included, as well as the r2 values from the sensitivity analysis. The columns headed with the 1000 Genomes population codes are the allele frequencies for each SNP in those populations. The SNPs are listed in order of removal in the sensitivity analysis. Table S3. Multiple sclerosis full data set. SNP rs number and minor allele are included, as well as the r2 values from the sensitivity analysis. The columns headed with the 1000 Genomes population codes are the allele frequencies for each SNP in those populations. The SNPs are listed in order of removal in the sensitivity analysis. Table S4. Height full data set. SNP rs number and minor allele are included, as well as the r2 values from the sensitivity analysis. The columns headed with the 1000 Genomes population codes are the allele frequencies for each SNP in those populations. The SNPs are listed in order of removal in the sensitivity analysis. Table S5. 1000 Genomes superpopulations, populations and population description. Table S6. PRS values for each population, before and after maximization. Table S7. Female height r2 values from the maximization analysis. Table S8. Lactase persistence filtered data set. Table S9. Melanoma filtered allele frequency data. Table S10. Multiple sclerosis filtered allele frequency data. Table S11. Male Height filtered allele frequency data. Table S12. Female Height filtered allele frequency data.