cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/ml5607
title: Increasing the Efficiency of Ensemble Molecular Dynamics Simulations with Termination of Unproductive Trajectories Identified at Runtime

description: The application of Molecular dynamics (MD) simulations to study increasingly
larger and more complex systems is challenged by the required amounts of trajectory
data needed to sample their conformational space appropriately. The analysis and
interpretation phase of such massive data sets that have to be stored and fed to the
various algorithms to reveal the dynamic behaviors of the systems and the underlying
energetics in structural terms related to functional mechanisms are also a significant
challenge. To develop computational means that can address these challenges, we are developing a software framework that can increase the efficiency of this process. We present one component of this framework that can reduce the size of the accumulating data set while maintaining the structural attributes, distribution, and relative probability ranking of the minima in the free energy map for the system. This framework component utilizes early termination of individual trajectories identified as unproductive in the sampling of conformational space. The criteria for termination are derived quantities (DQs) such as collective variables (CVs) and secondary quantities calculated from the time series of CVs. They are computed and applied during the trajectory generation.
The approach is illustrated with simulations of the FS peptide and evaluated from
comparisons between the free energy surfaces calculated from ensembles of complete, unabridged simulations with those obtained from ensembles in which ~5–50% of trajectories were terminated early. Our early termination approach can optimize computational efficiency while achieving a robust representation of conformational space.
DOI: 10.21233/d81z-a506
title: Island Lake diatom surface sample dataset

description: Raw data for the Island Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.7910/dvn/i7emct
title: During a Flight

description: Photos taken during a routine flight.
DOI: 10.7910/dvn/ayqruz
title: Replication Data for: Low-Level Zoonotic Transmission of Clade C MERS-Cov in Africa: Insights from Scooping Review and Cohort Studies in Hospital and Community Settings

description: This is a dataset with variables on zoonotic human transmission of clade C merscov that was collected in Northern Kenya in community and hospital settings
DOI: 10.7910/dvn/aouhgi
title: The multi-dimensional environmental impact of global crop commodities

description: Agriculture is one of the leading causes of detrimental environmental impacts including greenhouse gas emissions, biodiversity loss and depletion of freshwater resources, among others. Such impacts can be assessed by environmental sustainability indices, however, limitations in current indicators necessitate the development of more robust and standardized crop-specific environmental sustainability indices. Here, we developed the crop environmental sustainability index (PLANTdex), a spatially-explicit index (5 arcmin resolution) quantifying crop production's environmental impacts. PLANTdex includes globally standardised indicators of environmental impacts assessing water stress and biodiversity loss via five emission pathways: greenhouse gas emissions, water consumption, land occupation, nitrogen- and phosphorus- fertiliser application. We applied PLANTdex to 16 crops, revealing high variability across production system efficiencies, crop types, and local context environmental sensitivities. Globally and nationally, no clear correlation emerged between PLANTdex scores and crop production, but stronger correlations were evident at finer spatial scales and for individual crops. Sugarcane showed the strongest negative correlation (low impacts in high-production areas), while oil palm had the strongest positive correlation (high impacts in high-production areas), highlighting the importance of sub-national, crop-specific assessments. PLANTdex’s spatial resolution and crop specificity make it valuable for initiatives like the Taskforce on Nature-related Financial Disclosures (TNFD) and corporate sustainability strategies.

Here, PLANTdex datasets are provided for 16 crop commodities for the year 2000 at the five arcmin resolution
DOI: 10.7910/dvn/mkabox
title: Material Science and Artificial Intelligence: Insights from Professor Demircan Canadinc

description: In this interview, Professor Demircan Canadinc of Koç University explains his work at the intersection of material science and artificial intelligence (AI). Professor Canadinc has concentrated on the deformation of metallic substances as his area of expertise in the area of mechanics of materials. His current research, in collaboration with important institutions like Los Alamos National Laboratory, transforms the design of high-strength, smart shape memory alloys, and biomedically compatible metallic materials. His work addresses the challenges of creating alloys with a Young’s modulus akin to human bone for orthopedic implants. Professor Canadinc uses AI to optimize the alloy composition with exceptional speed and efficiency which is a breakthrough that significantly improves upon the traditional, decades-long trial-and-error cycle in material design. This interview with Professor Canadinc explores the utilization of state-of-the-art techniques such as SEM and XPES housed in KUTTAM (Koç University Research Center for Translational Medicine) laboratory for the characterization of newly minted alloys. Professor Canadinc also sheds light on the broader usage of AI in materials science and his anticipation for the future applications of AI in the field.
DOI: 10.7910/dvn/qmzx6s
title: Replication Data for: "Organizational Adaptation, Task Complexity, and Effective Administration of Unemployment Programs in the American States"

description: This set of data replication file materials contain 18 files (1 READ Me document, 1 Data Codebook document, 2 Stata database files, 7 Stata program files, and 7 Stata output files corresponding to each of the program files) to perform statistical analysis included in both the article manuscript and Online Appendix documents. Please consult READ ME document before proceeding. Please note, the descriptive statistics appearing in Online Appendix A are executed in the "Manuscript" program code and corresponding output files. All statistical graphics (Stata *.gph files) were generated from the code contained in the program files listed below.
DOI: 10.7910/dvn/nkoxyh
title: Replication Data for: Myths of Multipolarity: The Sources of Brazilian Foreign Policy Overstretch

description: Replication files for the in-text application of the Synthetic Control Method
DOI: 10.7910/dvn/b0bgku
title: Methods used in the diagnostics of chronic endometritis and the effectiveness of antibiotic therapy in the context of symptom remission and obstetric outcomes.

description: To examine the methods used in the diagnostics of chronic endometritis and the effectiveness of antibiotic therapy in the context of symptom remission and obstetric outcomes
DOI: 10.21233/ma4w-9f47
title: Colonel's Island Site 357 vertebrate fauna dataset

description: Raw data for the Colonel's Island Site 357 vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.7910/dvn/ws38sa
title: The Rural Household Multiple Indicator Survey (RHoMIS) data of 54,873 farm households in 35 countries

description: Here we release the Rural Household Multi-Indicator Survey (RHoMIS) dataset, derived from the open-source RHoMIS toolkit. RHoMIS is designed to simplify the collection, analysis, and dissemination of interoperable data from farm-household surveys. This release harmonizes 54,873 household observations spanning 35 countries in Latin America, Africa, and Asia into a single dataset, collected between 2015 and 2023. The data supports the investigation of system dynamics relating to food production, food security, and pathways out of poverty for smallholder farmers.
This dataset is an update and revision of the previous RHoMIS dataset, published in 2020. In this new release we present a database quadruple the size, with observations of 54,873 households from 35 countries and 119 unique projects, collected from 2015 until 2023. These data are accompanied with radically improved analytical routines to process the data and calculate common performance indicators. We report 1599 variables and 41 farm household level indicators, as well as crop-level information (production, area planted, use of the produce, and sale value). We also report gendered decision-making information over the consumption of produced foodstuffs and over the incomes derived from on- and off-farm activities.
DOI: 10.7910/dvn/xrvezj
title: Replication Data for: Targeted Undersmoothing - Sensitivity Analysis for Sparse Estimators

description: Data and code for replicating simulation and JTPA example and code for replicating marketing example from "Targeted Undersmoothing - Sensitivity Analysis for Sparse Estimators"
description: Volume XX, Issue X
DOI: 10.21233/9mec-9h17
title: Irwin vertebrate fauna dataset

description: Raw data for the Irwin vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.7910/dvn/oactqg
title: Replication Data for: "Occupational Licensing and Income Inequality in the States"

description: The decades-long rise of economic inequality in the U.S. has led to a growing body of literature examining the role of policy in shaping income differences. We examine one such policy: occupational licensing regulations. Licensing can restrict employment and reduce market competition, which can then inflate wages for those in licensed professions. Existing research demonstrates that occupational licensure does increase wages in specific industries, leading some scholars to argue that licensing makes income inequality worse. We add nuance by arguing that the effect of licensing on inequality is dependent on which occupation classes experience the largest wage premiums. Using a comprehensive over-time database of state licensing regulations, we first demonstrate that medium- and low-wage jobs garner larger wage premiums than high-wage occupations. Second, consistent with this result we then show that the occupational licensing regulations have the overall effect of reducing state income inequality. This research contributes to our understanding of the causes of growing inequality and how public policy can shape economic disparities through sometimes unintended and indirect ways.
DOI: 10.7910/dvn/7z78kn
title: United States Geological Survey: Employee Phonebook

description: Excel spreadsheet of the Employee Phonebook. Last modified Wednesday, January 22, 2014.
DOI: 10.7910/dvn/xxf8s4
title: Replication Data for: Campaign Finance Transparency Affects Legislators’ Election Outcomes and Behavior

description: Data and code to replicate Tables 1-8 and appendix tables and figures, along with other analysis described in the main text.
description: We will update the publication information once we have the DOI.
DOI: 10.7910/dvn/oa2npz
title: Replication Data for: Industrial Water Pollution and Agricultural Production in India

description: Replication package for the study "Industrial Water Pollution and Agricultural Production in India," containing the raw data, code, and documentation necessary to replicate all results. Unzip all 3 archives into the same directory.
DOI: 10.7910/dvn/y4xfct
title: Replication Data for: Special Interest Trade-Offs: Campaign Finance Reforms and Religious Influence in Politics in Brazil

description: This repository contains all data and R codes to replicate tables and figures in "Special Interest Trade-Offs: Campaign Finance Reforms and Religious Influence in Politics in Brazil"
DOI: 10.7910/dvn/wy3na3
title: Gopherus morafkai reference genome

description: Supporting data files for the Gopherus morafkai reference genome assembly and annotation
DOI: 10.21233/qj95-4465
title: Dyers Lake diatom dataset

description: Raw data for the Dyers Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.7910/dvn/apmkhv
title: Replication Data for: Making the Connection: An Examination of Institutional Repositories and Scholarly Communication Crosslinking Practices

description: Institutional repositories (IRs) remain a powerful tool for opening, sharing, and preserving scholarship. Scholarly communication (SC) services and resources are essential to promoting and supporting IRs. Linking SC services within an IR offers support to users at their point of need. 

This study investigates the prevalence of web linking between IR and SC services in 145 Association of Research Libraries and Carnegie R1 libraries. This quantitative analysis identifies gaps and offers practical recommendations for developing connections between SC and IR websites at academic libraries.
DOI: 10.7910/dvn/i3odnf
title: Executive Agreements Database, Statement Concerning the Air Transport Agreement with Uganda Signed At Atlanta October 27, 2009 Entered Into Force October 27, 2009

description: TIAS 09-1027

cover memo
DOI: 10.7910/dvn/wzvllu
title: Cross-cultural Adaptation of the Body Satisfaction and Global Self Perception Questionnaire for Subjects with Non-specific Musculoskeletal Disorders

description: Abstract
Background: Assessing patient’s cognitions and emotions about their physical body is an important part of rehabilitation planning, as musculoskeletal disorders can lead to a change in bodily perceptions.

Methods: This study explores the validity and reliability of the Body Satisfaction and Global Self-Perception Questionnaire (QSCPGS)] in the Spanish population. In addition to calculating Cronbach’s alpha, we conducted Exploratory Factor Analysis and Confirmatory Factor Analyses to test the scale’s validity. We then conducted a test–retest and longitudinal measurement invariance test to explore our measure’s reliability.

Results: Our final sample consisted of 147 subjects with non-specific musculoskeletal disorders (M = 32 years, SD = 15.06), who provided two data points in a 30-day period. A reduced, four-factor model fit the data better [(χ2 = 92.51*; df = 71; df = χ2/df = 1.30; RMSEA= .04; CFI = .95; TLI = .94; SRMR = .05; WRMR = .84)] than any other model. The re-test validity analyses revealed that the four-factor model was stable over time. Finally, the reduced scale correlated with the SF-36 Quality of Life inventory and participants’ BMI. 

Conclusions: The QSCPGSe (Spanish version QSCPGS) is a reliable and effective tool for measuring body image perceptions that are more accurate than the original scale.

Keywords: Body Satisfaction, Questionnaire, Global Self Perception, Musculoskeletal.
DOI: 10.7910/dvn/dz1aat
title: Replication Data for- A Novel Approach to Reduce Excess Liver Fat and Cardiovascular Disease Risk Factors

description: Data set for AHA AIREA grant 20AIREA35170031
DOI: 10.7910/dvn/as4vuu
title: Reported &lt;5 Child Respiratory Diseases in Barranquilla, Colombia, 2009-2022

description: This dataset is part of the ESCALA (Study of Urban Health and Climate Change in Informal Settlements in Latin America) project that was funded by the Lacuna Fund of the Meridian Institute https://lacunafund.org/. 

Respiratory disease cases in children less than 5 years old reported to surveillance systems. The data were downloaded from the national health database plattform (SIVIGILA). The downloaded data were not validated or verified independently. The original data had duplicate and incomplete records. Duplicate records were removed from the database. There were also records with age values outside of the valid range, those were removed. There were no data for Barranquilla for 2007 and 2008.
DOI: 10.7910/dvn/t7bslp
title: Replication Data for: Integrating Strategic Culture and the Operational Code in Foreign Policy Analysis

description: This dataset includes information about the replication procedure and the supporting files for a forthcoming article in Foreign Policy Analysis, Manuscript ID: FPA-21-Jun-0111
DOI: 10.21233/d422-yb79
title: L.Carnelian Lake water chemistry dataset

description: Raw data for the L.Carnelian Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.7910/dvn/o6l4ux
title: Replication Data for: Early Statehood and Support for Autocratic Rule in Africa

description: Recent work highlights the importance of pre-modern political practices for explaining persistent institutional features, including representative democracy. Typically, this argument is institutional in nature - pre-industrial practices are hypothesized to either bolster or retard the transmission of democratic institutions. This article proposes a separate channel through which legacies of early statehood continue to impact the prospects of democratic governance. Using survey data from Africa, we document a positive relationship between early statehood development and support for autocratic rule among ordinary Africans. This finding is robust to a wide range of pre- and post-treatment covariates, country and survey round fixed effects, as well as an instrumental-variable design. The identified relationship is particularly identifiable in respondents from precolonially centralized ethnic groups in former British colonies, suggesting the importance of locally surviving traditional institutions for propagation of norms that owe their origins to precolonial autocratic socialization.
DOI: 10.7910/dvn/oaurjz
title: Replication Data for: Do discurso antipolítica a uma retórica de adesão ao establishment: as estratégias de Alexandre Kalil e Romeu Zema nas eleições de 2016 a 2022

description: Banco de dados do artigo Do discurso antipolítica a uma retórica de adesão ao establishment: as estratégias de Alexandre Kalil e Romeu Zema nas eleições de 2016 a 2022
DOI: 10.7910/dvn/ql5j3w
title: Supporting data for "Longitudinal Monitoring of Circulating Tumor DNA in Aggressive Large B-cell Lymphoma: A Prospective Correlative Study of ctDNA Kinetics and PET-CT Metrics"

description: Positron emission tomography-computed tomography (PET-CT) is recommended for response evaluation in aggressive large B-cell lymphoma (LBCL) but cannot detect minimal residual disease (MRD). Circulating tumor DNA (ctDNA) has emerged as a promising biomarker for real-time disease monitoring. This study evaluated the longitudinal monitoring of ctDNA as an MRD marker in LBCL.

In this prospective, single-center study, 14 newly diagnosed LBCL patients receiving first-line immunochemotherapy underwent frequent longitudinal blood sampling. A 53-gene targeted sequencing panel quantified ctDNA and evaluated its kinetics, correlating it with clinical parameters, PET-CT response, and total metabolic tumor volume (TMTV) calculated via AI-based RECOMIA analysis.

Baseline ctDNA was detected in 11 out of 14 patients (79%), with a median variant allele frequency of 6.88% (interquartile range: 1.19–10.20%). ctDNA levels significantly correlated with TMTV (ρ = 0.91, p &lt; 0.0001) and tumor burden markers. In responders, ctDNA declined by 2-log-fold after one cycle. In responders, the 1–2 log10-fold reduction in ctDNA levels after one cycle of treatment mirrored the PET-CT metabolic changes. Concurrently with PET-CT, ctDNA levels identified all relapse or refractory disease cases. 

This study demonstrates ctDNA-based MRD monitoring in LBCL using a clinically applicable targeted assay with a minimum analytical sensitivity of 10-3. The kinetics of ctDNA reflected the clinical course and PET-CT response, correlating strongly with AI-based TMTV, underscoring its complementary potential to PET-CT.
DOI: 10.7910/dvn/7yhnyc
title: The Impact of Using an Infographic-based Training Program on Improving Visual Motor Memory Among EFL Students

description: Abstract
Objectives: This study aimed at investigating the impact of an infographic-based training program on improving the visual motor memory among EFL students.

Methods/statistical analysis: The study used a semi-experimental approach and the program was applied on 60 EFL students enrolled in the schools of the Directorate of Education in Asir region, Saudi Arabia. The students were divided into two groups: an experimental and control groups. The researcher applied the training program on students after training the teachers on how to better utilize all the elements of the training program effectively.

Findings: The results showed statistically significant differences in the post-test of visual motor memory skills between the experimental and control groups, which were in favor of the experimental group. The results also revealed that there were no statistically significant differences in the visual motor memory posttest due to the variables of gender and interaction between group and gender. The study concluded that using infographics enhanced the participants’ visual motor memory skills in learning English as a second language regardless of their gender, which indicates the appropriateness of the training program for such students.

Application/improvements: The study recommended this training program to be used by EFL teachers and EFL curricula designers to consider integrating infographics in the design of these courses.

Keywords: Infographics, VIsual Motor Memory, EFL students.
DOI: 10.7910/dvn/b2eaul
title: AI Perception vs Reality: Exploring the perceptual boundaries of ‘AI-generated content’ in modern content marketing

description: The Survey Link: https://docs.google.com/forms/d/1Yz93BqhLOcbV-8gZuLP2zsp8jfWLpgjDxZh-HiR4UZI/edit