cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.syfxex
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-105.8688 20.24913, -105.7188 20.24913, -105.7188 20.39913, -105.8688 20.39913, -105.8688 20.24913))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 27 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040171-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23637/rothamsted.98ywz
title: universal_grass_peps

description: This dataset is the output from a bioinformatics pipeline developed by Rowan Mitchell during 2018-2024 that seeks to identify all universal protein-coding genes in grasses and to estimate how specific they are to grasses. The dataset has 5 components: (1) universal_grass_peps.xlsx contains summary information on all the universal groups of peps identified. (2) files in genBlastG/* are genome annotation files for each novel gene model generated by the genBlastG files in the pipeline. (3) hmms/*.msa.fa are the multiple alignment sequence fasta files, one for each group. (4) files hmms/final_db.hmms* are for use to search the database with query sequences using the HMMER package. (5) files in lookup/* allow users to find which groups a grass query pep ID is a member of, or associated to, for 16 different grass species.
description: The genomic sequences that were used in the pipeline were taken from Ensembl Plants release 56 (February 2023).
https://feb2023-plants.ensembl.org/index.html
description: A bioinformatics pipeline was developed to identify highly-conserved universal grass genes using 16 grass full genomes in Ensembl Plants release 56. The first steps used existing gene models to generate groups of grass orthologs to rice and maize genes present in most grass species and refined membership of these groups such as to optimise the Hidden Markov Model (HMM) profile score from the HMMER package. These were then supplemented using new gene models found in grass genomes with the genBlastG tool; this step increased the number of universal groups by &gt;2-fold to give 12,609 highly conserved, universal groups. Specificity for these groups was assessed using closest matching gene models from non-monocot species. Possible cut-off values were tested with sets of genes expected to be either of common function for all plants or of commelinid- / grass-specific function. A specificity metric based on HMM score from grass group profiles performed better than % identity as a means of discriminating between the specific and common function sets. Using an appropriate cut-off for this metric, 5,973 of the groups were identified as specific to monocots of which 66% appeared to be grass specific.
DOI: 10.5281/zenodo.14178000
title: Parkinson's Anxiety Network (anxiety-network-pd)

description: An a priori anxiety network, based on previously reported results in structural and microstructural Parkinson’s disease anxiety literature.

This network will be used in a region of interest analysis in a neuroimaging study characterising the microstructural basis of anxiety in early Parkinson's disease. It will be used alongside a High Density Anxiety Network (10.5281/zenodo.14177822).
DOI: 10.5281/zenodo.14177822
title: High density Anxiety Network (anxiety-network-all)

description: An a priori anxiety network, based on a comprehensive review of anxiety literature, combining literature from humans, both Parkinson's Disease and non-Parkinson's disease groups, and animal models.

This network will be used in a region of interest analysis in a neuroimaging study characterising the microstructural basis of anxiety in early Parkinson's disease. It will be used alongside a Parkinson's Anxiety Network (10.5281/zenodo.14178000).
DOI: 10.17632/52xjzpzsp8
title: Rapid increase of soil organic carbon in karst areas in Chongqing compared with non-karst areas: storage volume and driving factors

description: chongqing soil organic carbon density data
DOI: 10.17632/52xjzpzsp8.1
title: Rapid increase of soil organic carbon in karst areas in Chongqing compared with non-karst areas: storage volume and driving factors

description: chongqing soil organic carbon density data
DOI: 10.17632/c9m85vd4zt.1
title: Causes and management of pellagra in the 21st century: A systematic review

description: This systematic review was conducted following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist.5 The study protocol was registered on PROSPERO (CRD42022381416). Relevant case-control studies, case reports, and case series published in English between 2000-2023 were included. Commentaries, editorials, review articles, book chapters, or oral and poster communications were not considered for inclusion. Only papers reporting patients with clinical manifestations consistent with pellagra and who showed improvement after vitamin B3 administration or in whom niacin deficiency was confirmed through serologic and/or urinary tests were included. We searched PubMed and Scopus databases up to 9th January 2023, to identify eligible papers. Results of the systematic review are summarized in the table attached.
DOI: 10.15468/dl.kq2ujm
title: Occurrence Download

description: A dataset containing 158939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is d8d6c888-92e7-4036-9808-fb3812be61e1",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 158939 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040170-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zhmarw
title: Occurrence Download

description: A dataset containing 789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bolitoglossa adspersa"
 ]
}

 The dataset includes 789 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040172-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rn4h6
title: Occurrence Download

description: A dataset containing 9919 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-105.7188 20.24913, -105.5688 20.24913, -105.5688 20.39913, -105.7188 20.39913, -105.7188 20.24913))"
 ]
}

 The dataset includes 9919 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040173-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3czskt
title: Occurrence Download

description: A dataset containing 11207229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru"
 ]
}

 The dataset includes 11207229 records from 2861 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040148-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29184182
title: <b>Effects of Dietary Supplementation with Different Levels of Rose Pomace on Rumen Bacterial Diversity and Fermentation, and Longissimus Dorsi Fatty Acids in Hu Sheep</b>

description: To address the underutilization of rose processing byproducts and meet the demand for antibiotic-free meat production, this study examined the effects of dietary supplementation with rose pomace (RP) on growth performance, rumen fermentation, bacterial diversity, and longissimus dorsi amino acid and fatty acid profiles in Hu sheep. Forty male Hu sheep were randomly assigned to four groups (n=10): a control group (RP0) with a basal diet and three treatment groups supplemented with 2%, 4%, or 8% RP (RP2, RP4, RP8). Results showed that RP8 had significantly higher dry matter intake (DMI) than RP2 (P≤0.05). Rumen fermentation analysis indicated higher acetate in RP4 than RP0 (P≤0.05), while propionate and total volatile fatty acids (TVFA) were lower in RP0 than in all RP groups (P≤0.05). RP8 exhibited significantly elevated isobutyrate (P≤0.05) and isovalerate (P≤0.01), with valerate levels higher in RP4 and RP8 than RP0 (P≤0.05). Microbial analysis revealed increased Bacteroidota and reduced Patescibacteria in RP8 (P≤0.05). RP8 also showed higher Rikenellaceae_RC9_gut_group abundance (P≤0.05). In longissimus dorsi muscle, RP4 had significantly higher C18:3N3, N-3 PUFAs, and C20:2N6 than RP0 and RP8 (P≤0.05). These findings suggest RP modulates rumen microbiota and fermentation, enhancing beneficial fatty acid deposition in lamb meat. An RP supplementation level of 2%-4% yielded optimal results, providing valuable insights for sheep farmers seeking functional feed additives.
DOI: 10.15468/dl.99qrwu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dolichopteroides Parin, Belyanina & Evseenko, 2009",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 1.2321,45.9851 1.8496,44.9648 1.8496,44.9648 1.2321))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008618-250525065834625/datasets/export for details.
DOI: 10.25549/inscriptifact-ouc110830873
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110830801
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.5281/zenodo.16624262
title: Rhonegletscher DAS Cryoseismic Training Dataset, Features, and Comprehensive Catalog

description: This dataset supports the analysis and classification of cryoseismic events recorded on the Rhonegletscher glacier using Distributed Acoustic Sensing (DAS). It includes features, cable layout information, and the training dataset used for developing machine learning models in the associated study as well as the comprehensive catalog of cryoseismic activity recorded on the glacier.
DOI: 10.5281/zenodo.17555409
title: Rhonegletscher DAS Cryoseismic Training Dataset, Features, and Comprehensive Catalog

description: This dataset supports the analysis and classification of cryoseismic events recorded on the Rhonegletscher glacier using Distributed Acoustic Sensing (DAS). It includes features, cable layout information, and the training dataset used for developing machine learning models in the associated study as well as the comprehensive catalog of cryoseismic activity recorded on the glacier.
DOI: 10.25549/inscriptifact-ouc110830793
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110830787
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.6084/m9.figshare.30601064
title: <b>Présence et diversité des phlébotomes en région Bourgogne-Franche-Comté – Étude de terrain, été 2024</b>

description: <b>[Presence and diversity of sand flies in the region</b> <b>Bourgogne-Franche-Comté</b><b> – Field study, summer 2024]</b>Phlebotomine sand flies are vectors of <i>Leishmania</i> protozoans and phleboviruses in the Mediterranean region. Sand flies are common in that context, but rarer north of the Alps. Few sand fly occurrence data exist in the northern half of France, and almost none are recent. To better assess the risk to human and animal health, we suggested performing a transversal field study to assess presence and diversity of sand flies in the French region Bourgogne-Franche-Comté. This study follows and extends a field study that was achieved in 2023, searching for sand flies at many locations along a transect from the Alps to southern Netherlands. In July–August 2024, light traps, interception sticky traps, resting catches and human landing captures were performed at 26 localities distributed across the region, with at least one locality in each ‘arrondissement’ administrative unit (except those surveyed in 2023). A total of 144 samples were collected, resulting it detecting sand fly presence at 16 localities, yielding 74 specimens. Two species were captured: <i>Phlebotomus mascittii</i> and <i>Ph. perniciosus</i>. Both species were detected for the first time in several ‘département’ administrative units. While <i>Ph. mascittii</i> was found distributed all over the region except the Jura Mountain, <i>Ph. perniciosus</i> was restricted to the south and the west of the region. Site categories at which sand flies were the more frequently detected were barns or shelters with beaten earth floor, closed or open, as well as rocky areas. Based on both studies achieved in 2023 and 2024, we now have a first but decent overview of the sand fly fauna in Bourgogne-Franche-Comté. Results suggest a low risk of sand fly vectorial transmission in the region, but slightly higher in the southern part. Further studies are suggested to enhance and deepen the sand fly entomological understanding and the related vectorial risk. It remains crucial to collect data on canine and human leishmaniosis and possibly Tosana virus infections, for both imported cases and possible locally acquired ones, to refine the risk assessment.This FigShare item consists of:a study report [In French]a data set [Excel file]
DOI: 10.6084/m9.figshare.30601064.v1
title: <b>Présence et diversité des phlébotomes en région Bourgogne-Franche-Comté – Étude de terrain, été 2024</b>

description: <b>[Presence and diversity of sand flies in the region</b> <b>Bourgogne-Franche-Comté</b><b> – Field study, summer 2024]</b>Phlebotomine sand flies are vectors of <i>Leishmania</i> protozoans and phleboviruses in the Mediterranean region. Sand flies are common in that context, but rarer north of the Alps. Few sand fly occurrence data exist in the northern half of France, and almost none are recent. To better assess the risk to human and animal health, we suggested performing a transversal field study to assess presence and diversity of sand flies in the French region Bourgogne-Franche-Comté. This study follows and extends a field study that was achieved in 2023, searching for sand flies at many locations along a transect from the Alps to southern Netherlands. In July–August 2024, light traps, interception sticky traps, resting catches and human landing captures were performed at 26 localities distributed across the region, with at least one locality in each ‘arrondissement’ administrative unit (except those surveyed in 2023). A total of 144 samples were collected, resulting it detecting sand fly presence at 16 localities, yielding 74 specimens. Two species were captured: <i>Phlebotomus mascittii</i> and <i>Ph. perniciosus</i>. Both species were detected for the first time in several ‘département’ administrative units. While <i>Ph. mascittii</i> was found distributed all over the region except the Jura Mountain, <i>Ph. perniciosus</i> was restricted to the south and the west of the region. Site categories at which sand flies were the more frequently detected were barns or shelters with beaten earth floor, closed or open, as well as rocky areas. Based on both studies achieved in 2023 and 2024, we now have a first but decent overview of the sand fly fauna in Bourgogne-Franche-Comté. Results suggest a low risk of sand fly vectorial transmission in the region, but slightly higher in the southern part. Further studies are suggested to enhance and deepen the sand fly entomological understanding and the related vectorial risk. It remains crucial to collect data on canine and human leishmaniosis and possibly Tosana virus infections, for both imported cases and possible locally acquired ones, to refine the risk assessment.This FigShare item consists of:a study report [In French]a data set [Excel file]
DOI: 10.48796/20240306-000
title: Digital Library of Northern Thai Manuscripts (Lanna)
DOI: 10.48796/20240306-002
title: Turfan Sammlung: Akten, Fotos, Zeichnungen
DOI: 10.25549/inscriptifact-ouc110830708
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110830404
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110830402
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110830366
title: Persepolis Fortification Elamite Tablet 1226, PF 1226

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF 1226 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Cracks on left edge, obverse, reverse.
DOI: 10.5281/zenodo.14984727
title: Morphological study of plasma bubbles using all-sky Airglow images and numerical simulations: Brazilian sector
DOI: 10.5281/zenodo.14984726
title: Morphological study of plasma bubbles using all-sky Airglow images and numerical simulations: Brazilian sector
DOI: 10.5281/zenodo.15485993
title: Morphological study of plasma bubbles using all-sky Airglow images and numerical simulations: Brazilian sector
DOI: 10.20350/digitalcsic/17249
title: RNA-Sequencing data from Vestibular Schwannoma samples and Schwann cells RNA

description: Vestibular Schwannoma fragments kept in RNAlater at -80°C were treated with Qiazol lysis reagent for RNA extraction using RNeasy mini kit (Qiagen, 50974106) following the instructions recommended by the manufacturer. Human Schwann Cell RNA (#1705, ScienCell, Carlsbad, CA, USA) was used as control condition.
description: [EN]: Fragments of human vestibular schwannomas (VS) were obtained after surgery at the Hospital Universitario de la Paz, Madrid, Spain. They were stored under specific conditions to obtain RNA. A commercial Schwann cell (SC) RNA was analysed together with these samples. The bioinformatic analysis began by mapping the sequencing reads to a reference transcriptome, then quantifying the expression levels of individual genes, and finally identifying specific genes that were differentially expressed between VS samples and SC.
description: [ES]: Se obtuvieron fragmentos de schwannomas vestibulares (EV) humanos tras una intervención quirúrgica en el Hospital Universitario de la Paz, Madrid, España. Se almacenaron en condiciones específicas para obtener ARN. Junto con estas muestras se analizó un ARN comercial de células de Schwann (SC). El análisis bioinformático comenzó con el mapeo de las lecturas de secuenciación a un transcriptoma de referencia, luego se cuantificaron los niveles de expresión de genes individuales y, finalmente, se identificaron genes específicos que se expresaban diferencialmente entre las muestras de VS y SC.
description: Genes_expresados_05_Tumor_SC.xlsl
DOI: 10.20350/digitalcsic/17250
title: Role of Inter-Particle Connectivity in the Photo-Carrier Cooling Dynamics in Perovskite Quantum Dot Solids
DOI: 10.15468/dl.xj8p2e
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-79.84292 -2.64357,-79.55375 -2.64327,-79.55409 -2.33059,-79.8432 -2.33086,-79.84292 -2.64357))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 105 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011227-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.