cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19200076
title: Additional file 9 of Elevated expression of the rhythm gene NFIL3 promotes the progression of TNBC by activating NF-κB signaling through suppression of NFKBIA transcription

description: Additional file 9: Supplementary Table 2.
DOI: 10.6084/m9.figshare.19200076.v1
title: Additional file 9 of Elevated expression of the rhythm gene NFIL3 promotes the progression of TNBC by activating NF-κB signaling through suppression of NFKBIA transcription

description: Additional file 9: Supplementary Table 2.
DOI: 10.6084/m9.figshare.5044300
title: Tracing sources of nitrate using water chemistry, land use and nitrogen isotopes in the Ganjiang River, China

description: In this work, we traced sources of nitrate in the Ganjiang River, a major tributary of Yangtze River, China, by analysing the water chemistry, nitrogen isotopes and land use. Water samples from 20 sites in the main stream and tributaries were collected in the dry and wet seasons. The δ15N- NO3− ranged from 0.97 to 8.60 ‰, and was significantly higher in the wet season than in the dry season, and significantly higher in tributaries than in the main stream. In the dry season, NO3− concentrations and δ15N- NO3− were significantly negatively correlated with forest and grassland areas, and positively correlated with paddy field and residential area. However, most of the correlations were not significant in the wet season. The results showed that fertilizer was the main source of nitrate in the Ganjiang River, and domestic sewage was important in the dry season, but its contribution was lower than that in other rivers in the Yangtze Basin. In the wet season, the intensified nitrogen cycle caused by high temperature and the mixing effect caused by rainfall made it difficult to trace nitrate sources using δ15N- NO3− and land use.
DOI: 10.6084/m9.figshare.5044300.v1
title: Tracing sources of nitrate using water chemistry, land use and nitrogen isotopes in the Ganjiang River, China

description: In this work, we traced sources of nitrate in the Ganjiang River, a major tributary of Yangtze River, China, by analysing the water chemistry, nitrogen isotopes and land use. Water samples from 20 sites in the main stream and tributaries were collected in the dry and wet seasons. The δ15N- NO3− ranged from 0.97 to 8.60 ‰, and was significantly higher in the wet season than in the dry season, and significantly higher in tributaries than in the main stream. In the dry season, NO3− concentrations and δ15N- NO3− were significantly negatively correlated with forest and grassland areas, and positively correlated with paddy field and residential area. However, most of the correlations were not significant in the wet season. The results showed that fertilizer was the main source of nitrate in the Ganjiang River, and domestic sewage was important in the dry season, but its contribution was lower than that in other rivers in the Yangtze Basin. In the wet season, the intensified nitrogen cycle caused by high temperature and the mixing effect caused by rainfall made it difficult to trace nitrate sources using δ15N- NO3− and land use.
DOI: 10.6084/m9.figshare.19200078
title: Additional file 8 of Quantitative multiplexed proteomics analysis reveals reshaping of the lysine 2-hydroxyisobutyrylome in Fusarium graminearum by tebuconazole

description: Additional file 8: Table S8. The protein domain enrichment analysis of tebuconazole-affected Khib proteins (TAKPs) in F. graminearum.
DOI: 10.6084/m9.figshare.19200078.v1
title: Additional file 8 of Quantitative multiplexed proteomics analysis reveals reshaping of the lysine 2-hydroxyisobutyrylome in Fusarium graminearum by tebuconazole

description: Additional file 8: Table S8. The protein domain enrichment analysis of tebuconazole-affected Khib proteins (TAKPs) in F. graminearum.
DOI: 10.6084/m9.figshare.19200081
title: Additional file 9 of Quantitative multiplexed proteomics analysis reveals reshaping of the lysine 2-hydroxyisobutyrylome in Fusarium graminearum by tebuconazole

description: Additional file 9: Table S9. The KEGG pathway enrichment analysis of tebuconazole-affected Khib proteins (TAKPs) in F. graminearum.
DOI: 10.6084/m9.figshare.19200081.v1
title: Additional file 9 of Quantitative multiplexed proteomics analysis reveals reshaping of the lysine 2-hydroxyisobutyrylome in Fusarium graminearum by tebuconazole

description: Additional file 9: Table S9. The KEGG pathway enrichment analysis of tebuconazole-affected Khib proteins (TAKPs) in F. graminearum.
DOI: 10.6084/m9.figshare.19200082
title: Additional file 1 of Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics

description: Additional file 1: Table S1. Glioblastoma sample cohort with clinical monitoring data (blue), MSP (orange), PyroMark (yellow) and local deep sequencing (green) results; For MSP results, 1 equals the presence and 0 the absence of a methylated PCR product, respectively. Missing results are indicated with “-”. Discordant MSP results (Esteller vs. Felsberg primer pair; proposed primer pair vs. pyrosequencing or LDBS) are highlighted in light orange. Results obtained from the same tumor but two different DNA isolations are highlighted in grey. ø=average methylation.
DOI: 10.6084/m9.figshare.19200082.v1
title: Additional file 1 of Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics

description: Additional file 1: Table S1. Glioblastoma sample cohort with clinical monitoring data (blue), MSP (orange), PyroMark (yellow) and local deep sequencing (green) results; For MSP results, 1 equals the presence and 0 the absence of a methylated PCR product, respectively. Missing results are indicated with “-”. Discordant MSP results (Esteller vs. Felsberg primer pair; proposed primer pair vs. pyrosequencing or LDBS) are highlighted in light orange. Results obtained from the same tumor but two different DNA isolations are highlighted in grey. ø=average methylation.
DOI: 10.6084/m9.figshare.19200085
title: Additional file 2 of Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics

description: Additional file 2: Table S2. Average DNA methylation values, variances and p values for single CpGs and combinations of CpGs based on a logistic regression model; CpGs were analyzed methylation domain-wise, most significant neighboring CpGs, PyroMark and MSP-covered CpGs are highlighted in yellow, blue and red, respectively.
DOI: 10.6084/m9.figshare.19200085.v1
title: Additional file 2 of Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics

description: Additional file 2: Table S2. Average DNA methylation values, variances and p values for single CpGs and combinations of CpGs based on a logistic regression model; CpGs were analyzed methylation domain-wise, most significant neighboring CpGs, PyroMark and MSP-covered CpGs are highlighted in yellow, blue and red, respectively.
DOI: 10.6084/m9.figshare.19200094
title: Additional file 5 of Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics

description: Additional file 5: Table S3. P values obtained for Cox regression survival analysis for each CpG in MGMTup, MGMTe1 and MGMTi1; 1st sheet: all samples; 2nd sheet: statistical outliers #18 and #23 were excluded from analysis.
DOI: 10.6084/m9.figshare.19200094.v1
title: Additional file 5 of Bisulfite profiling of the MGMT promoter and comparison with routine testing in glioblastoma diagnostics

description: Additional file 5: Table S3. P values obtained for Cox regression survival analysis for each CpG in MGMTup, MGMTe1 and MGMTi1; 1st sheet: all samples; 2nd sheet: statistical outliers #18 and #23 were excluded from analysis.
DOI: 10.6084/m9.figshare.19200102
title: Additional file 1 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 1: Table S1. List of 425 targeted sequencing genes.
DOI: 10.6084/m9.figshare.19200102.v1
title: Additional file 1 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 1: Table S1. List of 425 targeted sequencing genes.
DOI: 10.6084/m9.figshare.11335784
title: Appendix A: Stability of boundary fixed points when the feedback control function f is in quadratic forms.;Appendix B: Constructive proof for the existence of control laws in the general framework. from Steering eco-evolutionary game dynamics with manifold control

description: Analyze the stability of boundary fixed points when the control function is in quadratic forms.;Given any initial and final states, we prove the existence of control laws in our general framework.
DOI: 10.6084/m9.figshare.11335784.v1
title: Appendix A: Stability of boundary fixed points when the feedback control function f is in quadratic forms.;Appendix B: Constructive proof for the existence of control laws in the general framework. from Steering eco-evolutionary game dynamics with manifold control

description: Analyze the stability of boundary fixed points when the control function is in quadratic forms.;Given any initial and final states, we prove the existence of control laws in our general framework.
DOI: 10.6084/m9.figshare.19200105
title: Additional file 2 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 2: Table S2. List of 91 TCGA patients' barcode.
DOI: 10.6084/m9.figshare.19200105.v1
title: Additional file 2 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 2: Table S2. List of 91 TCGA patients' barcode.
DOI: 10.6084/m9.figshare.19200108
title: Additional file 3 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 3: Table S3. List of all detected alterations and TMB in Chinese cohort.
DOI: 10.6084/m9.figshare.19200108.v1
title: Additional file 3 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 3: Table S3. List of all detected alterations and TMB in Chinese cohort.
DOI: 10.6084/m9.figshare.11335796
title: Table S1 from Mariana serpentinite mud volcanism exhumes subducted seamount materials: implications for the origin of life.

description: The subduction of seamounts and ridge features at convergent plate boundaries plays an important role in the deformation of the overriding plate and influences geochemical cycling and associated biological processes. Active serpentinization of forearc mantle and serpentinite mud volcanism on the Mariana forearc (between the trench and active volcanic arc) provides windows on subduction processes. Here, we present: (1) the first observation of an extensive exposure of an undeformed Cretaceous seamount currently being subducted at the Mariana Trench inner slope; (2) vertical deformation of the forearc region related to subduction of Pacific Plate seamounts and thickened crust; (3) recovered Ocean Drilling Program and International Ocean Discovery Program cores of serpentinite mudflows that confirm exhumation of various Pacific Plate lithologies, including subducted reef limestone; (4) petrologic, geochemical and paleontological data from the cores that show that Pacific Plate seamount exhumation covers greater spatial and temporal extents; (5) the inference that microbial communities associated with serpentinite mud volcanism may also be exhumed from the subducted plate seafloor and/or seamounts; and (6) the implications for effects of these processes with regard to evolution of life.This article is part of a discussion meeting issue ‘Serpentine in the Earth System’.
DOI: 10.6084/m9.figshare.11335796.v1
title: Table S1 from Mariana serpentinite mud volcanism exhumes subducted seamount materials: implications for the origin of life

description: The subduction of seamounts and ridge features at convergent plate boundaries plays an important role in the deformation of the overriding plate and influences geochemical cycling and associated biological processes. Active serpentinization of forearc mantle and serpentinite mud volcanism on the Mariana forearc (between the trench and active volcanic arc) provides windows on subduction processes. Here, we present: (1) the first observation of an extensive exposure of an undeformed Cretaceous seamount currently being subducted at the Mariana Trench inner slope; (2) vertical deformation of the forearc region related to subduction of Pacific Plate seamounts and thickened crust; (3) recovered Ocean Drilling Program and International Ocean Discovery Program cores of serpentinite mudflows that confirm exhumation of various Pacific Plate lithologies, including subducted reef limestone; (4) petrologic, geochemical and paleontological data from the cores that show that Pacific Plate seamount exhumation covers greater spatial and temporal extents; (5) the inference that microbial communities associated with serpentinite mud volcanism may also be exhumed from the subducted plate seafloor and/or seamounts; and (6) the implications for effects of these processes with regard to evolution of life.This article is part of a discussion meeting issue ‘Serpentine in the Earth System’.
DOI: 10.6084/m9.figshare.19200123
title: Additional file 8 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 8: Table S4. Clinical and pathological data of Chinese cohort.
DOI: 10.6084/m9.figshare.19200123.v1
title: Additional file 8 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 8: Table S4. Clinical and pathological data of Chinese cohort.
DOI: 10.6084/m9.figshare.19200126
title: Additional file 9 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 9: Table S5. FFPE DNA concentrations of Chinese cohort.
DOI: 10.6084/m9.figshare.19200126.v1
title: Additional file 9 of The genetic landscape of pancreatic head ductal adenocarcinoma in China and prognosis stratification

description: Additional file 9: Table S5. FFPE DNA concentrations of Chinese cohort.
DOI: 10.6084/m9.figshare.19200130
title: Additional file 2 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 2: Data S1. Genetic relationship of maize and teosinte inferred by ADMIXTURE.
DOI: 10.6084/m9.figshare.19200130.v1
title: Additional file 2 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 2: Data S1. Genetic relationship of maize and teosinte inferred by ADMIXTURE.
DOI: 10.6084/m9.figshare.19200133
title: Additional file 3 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 3: Data S2. Summary of selection sweeps with domestication and adaptation features.
DOI: 10.6084/m9.figshare.19200133.v1
title: Additional file 3 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 3: Data S2. Summary of selection sweeps with domestication and adaptation features.
DOI: 10.6084/m9.figshare.19200136
title: Additional file 4 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 4: Data S3. Summary of SNPs significantly associated with flowering-time traits detected by GWAS.
DOI: 10.6084/m9.figshare.19200136.v1
title: Additional file 4 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 4: Data S3. Summary of SNPs significantly associated with flowering-time traits detected by GWAS.
DOI: 10.6084/m9.figshare.19200139
title: Additional file 5 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 5: Data S4. List of plant materials used in this study.
DOI: 10.6084/m9.figshare.22359986
title: Territorial patterns of open e-government: evidence from Chilean municipalities

description: This article analyses the development of open e-government between 2019 and 2021 in Chile’s 345 municipalities. We aggregated an e-government index (EGi) to measure the provision of local digital services for citizens. We then combined this with indicators of transparency and access to public information to create an open e-government index (OEGi). Our empirical strategy is based on geospatial econometric analysis in two stages: first, we describe and georeference our index, estimating the level of spatial autocorrelation and then fit different econometric models to measure the impact of the degree of Internet use, socioeconomic dynamism and management capacity on the municipalities’ development of open e-government. Our main findings indicate that monetary poverty has a negative effect on the index, while the municipal government’s budget has a positive effect.
DOI: 10.6084/m9.figshare.22359986.v1
title: Territorial patterns of open e-government: evidence from Chilean municipalities

description: This article analyses the development of open e-government between 2019 and 2021 in Chile’s 345 municipalities. We aggregated an e-government index (EGi) to measure the provision of local digital services for citizens. We then combined this with indicators of transparency and access to public information to create an open e-government index (OEGi). Our empirical strategy is based on geospatial econometric analysis in two stages: first, we describe and georeference our index, estimating the level of spatial autocorrelation and then fit different econometric models to measure the impact of the degree of Internet use, socioeconomic dynamism and management capacity on the municipalities’ development of open e-government. Our main findings indicate that monetary poverty has a negative effect on the index, while the municipal government’s budget has a positive effect.
DOI: 10.6084/m9.figshare.19200139.v1
title: Additional file 5 of Population genomics of Zea species identifies selection signatures during maize domestication and adaptation

description: Additional file 5: Data S4. List of plant materials used in this study.
DOI: 10.6084/m9.figshare.22058783
title: Acceptability of mandatory vaccination: a survey experiment on the effects of thresholds and justifications

description: Mandatory vaccination mightseem like a straightforward solution for reaching a sufficient vaccine coverage during a pandemic. However, the effectiveness of mandatory vaccination is undermined if the public does not perceive such a compulsory policy as acceptable. We report a population-based survey experiment (<i>n</i> = 1,131), conducted in Finland, that addresses the effects that different ways of framing a mandatory vaccination program have on three outcome variables: (1) the perceived acceptability of the program, (2) the willingness to take the vaccine voluntarily, and (3) the preparedness to refuse the mandatory vaccine. In the 2 × 3 factorial experiment, the respondents were presented with one of three justification alternatives that stressed the benefits of the program for either the economy, health, or basic rights. The justification was accompanied with one of two thresholds for herd immunity (70 or 90 percent). We found that the justification and the threshold for herd immunity interact when it comes to the acceptability of the program and the willingness to take the vaccine voluntarily. Importantly, justifications drawing on health were ineffective at the lower threshold level but very effective when the threshold was high. The preparedness to refuse a mandatory vaccine was low and reacted weakly with the experimental treatments.
DOI: 10.6084/m9.figshare.22058783.v1
title: Acceptability of mandatory vaccination: a survey experiment on the effects of thresholds and justifications

description: Mandatory vaccination mightseem like a straightforward solution for reaching a sufficient vaccine coverage during a pandemic. However, the effectiveness of mandatory vaccination is undermined if the public does not perceive such a compulsory policy as acceptable. We report a population-based survey experiment (<i>n</i> = 1,131), conducted in Finland, that addresses the effects that different ways of framing a mandatory vaccination program have on three outcome variables: (1) the perceived acceptability of the program, (2) the willingness to take the vaccine voluntarily, and (3) the preparedness to refuse the mandatory vaccine. In the 2 × 3 factorial experiment, the respondents were presented with one of three justification alternatives that stressed the benefits of the program for either the economy, health, or basic rights. The justification was accompanied with one of two thresholds for herd immunity (70 or 90 percent). We found that the justification and the threshold for herd immunity interact when it comes to the acceptability of the program and the willingness to take the vaccine voluntarily. Importantly, justifications drawing on health were ineffective at the lower threshold level but very effective when the threshold was high. The preparedness to refuse a mandatory vaccine was low and reacted weakly with the experimental treatments.
DOI: 10.6084/m9.figshare.19200141
title: Additional file 2 of Human placental exosomes induce maternal systemic immune tolerance by reprogramming circulating monocytes

description: Additional file 2. DEGs between control and pEXO-educated monocytes.
DOI: 10.6084/m9.figshare.19200141.v1
title: Additional file 2 of Human placental exosomes induce maternal systemic immune tolerance by reprogramming circulating monocytes

description: Additional file 2. DEGs between control and pEXO-educated monocytes.
DOI: 10.6084/m9.figshare.19200144
title: Additional file 3 of Human placental exosomes induce maternal systemic immune tolerance by reprogramming circulating monocytes

description: Additional file 3. DEGs between control and pEXO-polarized macrophages.
DOI: 10.6084/m9.figshare.19200144.v1
title: Additional file 3 of Human placental exosomes induce maternal systemic immune tolerance by reprogramming circulating monocytes

description: Additional file 3. DEGs between control and pEXO-polarized macrophages.
DOI: 10.6084/m9.figshare.19200147
title: Additional file 4 of Human placental exosomes induce maternal systemic immune tolerance by reprogramming circulating monocytes

description: Additional file 4. MiRNA content of the pEXOs.
DOI: 10.6084/m9.figshare.19200147.v1
title: Additional file 4 of Human placental exosomes induce maternal systemic immune tolerance by reprogramming circulating monocytes

description: Additional file 4. MiRNA content of the pEXOs.
DOI: 10.5281/zenodo.10677398
title: Bacteriological Water testing in different regions of Ludhiana district, Punjab, India
DOI: 10.5281/zenodo.10677399
title: Bacteriological Water testing in different regions of Ludhiana district, Punjab, India
DOI: 10.6084/m9.figshare.19200199
title: Additional file 4 of Two-year immune effect differences between the 0–1–2-month and 0–1–6-month HBV vaccination schedule in adults

description: Additional file 4. Additional data: raw data (2021.01.13) (englished version).
DOI: 10.6084/m9.figshare.19200199.v1
title: Additional file 4 of Two-year immune effect differences between the 0–1–2-month and 0–1–6-month HBV vaccination schedule in adults

description: Additional file 4. Additional data: raw data (2021.01.13) (englished version).