cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17617/3.iqvlow
title: Low Pressure Amide Hydrogenation Enabled by Magnetocatalysis - Data

description: Low Pressure Amide Hydrogenation Enabled by Magneto-Catalysis

Nanoparticles Decorated Pt/Al2O3 Catalyst
DOI: 10.17617/3.vauchf
title: A singularity container for derivation of spatial WMH

description: This singularity file can be used to create WMH parcellation with the Bullseye segmentation approach. Fore more details see https://gitlab.gwdg.de/frauke.beyer/charge_spatialwmh
description: singularity
DOI: 10.21233/nd9r-7z91
title: George (BE) pollen surface sample dataset

description: Raw data for the George (BE) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.q3hwx6
title: PhD thesis Bruewer

description: Supplementary Files for PhD thesis by Jan Brüwer
DOI: 10.17617/3.5bpjup
title: 3D osteocyte lacunar morphometry of human bone biopsies with high resolution microCT: from monoclonal gammopathy to newly diagnosed multiple myeloma

description: Osteocytes are mechanosensitive, bone-embedded cells which are connected via dendrites in a lacuno-canalicular network and regulate bone resorption and formation balance. Alterations in osteocyte lacunar volume, shape and density have been identified in conditions of aging, osteoporosis and osteolytic bone metastasis, indicating patterns of impaired bone remodeling, osteolysis and disease progression. Osteolytic bone disease is a hallmark of the hematologic malignancy multiple myeloma (MM), in which monoclonal plasma cells in the bone marrow disrupt the bone homeostasis and induce excessive resorption at local and distant sites. Qualitative and quantitative changes in the 3D osteocyte lacunar morphometry have not yet been evaluated in MM, nor in the precursor conditions monoclonal gammopathy of undetermined significance (MGUS) and smoldering multiple myeloma (SMM). In this study, we characterized the osteocyte lacunar morphology in trabecular bone of the iliac crest at the ultrastructural level using high resolution microCT in human bone biopsy samples of three MGUS, two SMM and six newly diagnosed MM. In MGUS, SMM and MM we found a trend for lower lacunar density and a shift towards larger lacunae with disease progression (higher 50 % cutoff of the lacunar volume cumulative distribution) in the small osteocyte lacunae 20–900 μm3 range compared to control samples. In the larger lacunae 900–3000 μm3 range, we detected significantly higher lacunar density and microporosity in the MM group compared to the MGUS/SMM group. Regarding the shape distribution, the MGUS/SMM group showed a trend for flatter, more elongated and anisotropic osteocyte lacunae compared to the control group. Altogether, our findings suggest that osteocytes in human MM bone disease undergo changes in their lacunae density, volume and shape, which could be an indicator for osteolysis and disease progression. Future studies are needed to understand whether alterations of the lacunae architecture affect the mechanoresponsiveness of osteocytes, and ultimately bone adaptation and fracture resistance in MM and its precursors conditions.
DOI: 10.17617/3.e6gusa
title: Cutaneous Electrohydraulic (CUTE) Wearable Devices for Pleasant Broad-Bandwidth Haptic Cues

description: Natalia Sanchez-Tamayo, Zachary Yoder, Philipp Rothemund, Giulia Ballardini, Christoph Keplinger, Katherine J. Kuchenbecker. "Cutaneous Electrohydraulic (CUTE) Wearable Devices for Pleasant Broad-Bandwidth Haptic Cues"
DOI: 10.17617/3.n58kmf
title: Test dataset for deTELpy

description: RAW files for testing deTELpy functionalities
description: deTELpy
DOI: 10.5281/zenodo.15363669
title: INCENTIVE Luminex data from HZI
DOI: 10.5281/zenodo.15364687
title: INCENTIVE - HZI - Soluble Factors (Luminex Data)
DOI: 10.5281/zenodo.15364807
title: INCENTIVE - HZI - Soluble Factors (Luminex Data)
DOI: 10.17617/3.tn2xnm
title: Conifer transcriptome assemblies, namely from Abies alba, Abies balsamea and Abies koreana

description: Conifer transcriptome assemblies, namely from Abies alba, Abies balsamea and Abies koreana
description: Trinity, v2.4.0
description: Trimmomatic, v0.36
description: prinseq-lite, v0.20.4
description: pear, v0.9.10
description: mira, v4.9.6
description: MaSuRCA, v3.2.1_08102016
description: cd-hit, v4.6.1
description: subjunc, v1.5.1
description: picard, 2.9.2-SNAPSHOT
description: STAR, STAR_2.5.3a_modified
description: Stringtie, v1.3.3b
description: cufflinks, v2.2.1
description: GATK, 3.8-0-ge9d806836
description: TransDecoder, v5.0.1
description: PlantTFDB, v5.0
description: OrthoFinder, v2.5.5
description: last, v1542
description: MSA2dist, 3.18
description: phytools, v2.1
description: dplyr, v2.4.0
description: tidyr, v1.3.1
description: ape, v5.7
description: mclust, v6.1
description: feature, v1.2.15
description: compleasm, v0.2.5
description: Embryophyta odb10, Embryophyta odb10
DOI: 10.5281/zenodo.15363668
title: INCENTIVE - HZI - Soluble Factors (Luminex Data)
DOI: 10.5281/zenodo.15364810
title: INCENTIVE - HZI - Soluble Factors (Luminex Data)
DOI: 10.17617/3.4ikqag
title: Detection and Annotation of Unique Regions in Mammalian Genomes

description: This dataset contains the macle indexes as well as the abridged gene2go tables constructed for each of the 18 analysed mammalian species.
description: macle, 0.1
description: eggNOG-mapper, emapper-2.1.12
DOI: 10.21233/7b70-dt61
title: Chiguergue ostracode surface sample dataset

description: Raw data for the Chiguergue ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.bu7voy
title: Data and code for "Stress in the social environment: behavioural and social consequences of stress transmission in bird flocks"

description: Dataset and code containing behavioural and hormon data of experiment testing effects of stress and stress transmission in groups of zebra finches
DOI: 10.17617/3.kufqam
title: icon-2.6.6-swbvmix

description: Data set contain code of icon-2.6.6 + code changes related to the publication "Tuning the vertical mixing parameterisation in two different eddy-rich ocean models (ICON-O, v2.6.6 and FESOM, v2.5) only slightly reduces model-specific tropical Atlantic biases" by Swantje Bastein et al. (submitted to journal)
DOI: 10.17617/3.vvajsv
title: Product Distribution of Steady-State and Pulsed Electrochemical Regeneration of 1,4-NADH and Integration with Enzymatic Reaction

description: All the data related to the publication can be found in the dataset including figures and experimental data. Each data file is named corresponding to the original figure from the journal publication.
DOI: 10.17617/3.jbzhn2
title: Figure source data for "Nonthermal phonon dynamics and a quenched exciton condensate probed by surface-sensitive electron diffraction"

description: Figure source data supporting the publication "Nonthermal phonon dynamics and a quenched exciton condensate probed by surface-sensitive electron diffraction". All plots from the manuscript can be replotted using the data sets in the folder and the Jupyter Notebook &lt;code&gt; plot_script.ipynb&lt;/code&gt;. You can use this data repository interactively - click on the icon to launch a Jupyter session with Binder.
DOI: 10.17617/3.jqf9gl
title: Data for publication of 'Ring-shaped odor coding in the antennal lobe of migratory locusts'

description: This document contains both raw data and plot data for the publication
DOI: 10.17617/3.nrffqb
title: The Galactic latitude dependency of Faraday complexity in the S-PASS/ATCA RM catalogue

description: This dataset contains a catalogue for all observed sources in Ranchod et al., (2024). This catalogue is per the RMTable2023 standards presented in Van Eck et al. (2023), and is also available as part of the consolidated RMTable catalogue (v1.2.0). Please see readme.txt for column details.
DOI: 10.17617/3.2qkpkh
title: Dual-color MINFLUX: Kinesin-1 takes Chassé-Inchworm steps

description: Data and Matlab code repository for the article "Dual-color MINFLUX: Kinesin-1 takes Chassé-Inchworm steps"
description: Matlab, 2020b
DOI: 10.17617/3.g5y6hf
title: Correlating Valence and 2p3d RIXS Spectroscopies: A Ligand-Field Study of Spin-Crossover Iron(II)

description: The molecular spin-crossover phenomenon between high-spin (HS) and low-spin (LS) states is a promising route to next-generation information storage, sensing applications, and molecular spintronics. Spin-crossover complexes also provide a unique opportunity to study the ligand field properties of a system in both HS and LS states while maintaining the same ligand environment. Presently, we employ complementing valence and core-level spectroscopic methods to probe the electronic excited state manifolds of the spin-crossover complex [FeII(H2B(pz)2)2phen]0. Light-induced excited spin state trapping (LIESST) at liquid He temperatures is exploited to characterize magnetic and spectroscopic properties of the photo-induced HS state using SQUID and MCD spectroscopy. In parallel, Fe 2p3d RIXS spectroscopy is employed to examine the S = 0, 1 excited ligand-field (LF) states. These experimental studies are combined with state-of-the-art CASSCF/NEVPT2 and CASCI/NEVPT2 calculations characterizing the ground and LF excited states. Analysis of the acquired LF information further supports that the spin-crossover of [FeII(H2B(pz)2)2phen]0 is asymmetric, evidenced by a decrease in e in the LS state. The results demonstrate the power of cross-correlating spectroscopic techniques with high and low LF information content to make accurate excited state assignments as well as the current capabilities of ab initio theory in interpreting these electronic properties.
DOI: 10.17617/3.s3khms
title: Atmospheric flask sampling program of MPI-BGC, version 2024.1

description: This dataset contains the quality controlled, calibrated measurements of atmospheric greenhouse gas concentration and isotopic composition from air flask samples collected at a global network of stations. Version 2023.4 contains the observations from 2004 until early 2023. Sampling and measurement procedures, quality control, data screening and data format are described in the included report "The atmospheric flask sampling program of MPI-BGC, version 13", https://edmond.mpg.de/file.xhtml?fileId=108234&version=1.0.
DOI: 10.21233/kpg5-3649
title: Bílé Karpaty 11 pollen surface sample dataset

description: Raw data for the Bílé Karpaty 11 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.h7opib
title: A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.

description: Ribofilio is a software package that estimates the drop-off rate of ribosomes. 
It is a python package that takes as a required input the reference genome and the footprint. If the mRNA reads are available, this can be used as an optional parameter for normalization. The tool uses as well several other optional parameters like the bin size, plotting features, etc. The tool github page is: https://github.com/SherineAwad/Ribofilio.git
description: Ribofilio, 1.0.0
DOI: 10.17617/3.uyfds3
title: Data, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency"

description: Repository for the datasets, code, and images underlying figures in the manuscript "Combined expansion and STED microscopy reveals altered fingerprints of postsynaptic nanostructure across brain regions in ASD-related SHANK3-deficiency".
The folder structure is organized according to associated figures: Figure_NHSE-EF (Figures 1/S1), Figure_SYNLOC (Figure 2/S2-S3), Figure_REGSHAPE-SH3SHAPE (Figure 3/S4-S8), Figure_SH3STED (Figure 4-5/S9-S14), Figure_S15. In each folder all images, which were used in the figures are also included.
DOI: 10.17617/3.joqfan
title: Code and scripts for "The new plant functional diversity model JeDi-BACH (version 1.0) in the ICON Earth System Model (version 1.0)"

description: This dataset provides the model source code described and the scripts used in the publication "The new plant functional diversity model JeDi-BACH (version 1.0) in the ICON Earth System Model (version 1.0) " submitted to Geoscientific Model Development (GMD).
DOI: 10.17617/3.hsvmvc
title: Real-space detection and manipulation of topological edge modes with ultracold atoms

description: Data presented in the publication.
DOI: 10.17617/3.b0t72y
title: Source data for the manuscript: "Pre-zygotic mate selection is only partially correlated with the expression of NaS-like RNases and affects offspring phenotypes

description: This dataset contains post-pollination ethylene burst measurements and offspring phenotyping data after single pollination experiments of N. attenuata with favored, non-favored or neutral pollen donor.
DOI: 10.17617/3.4scujn
title: Supplemental data for "Interactions between U and V sex chromosomes during the life cycle of Ectocarpus"

description: In many animals and flowering plants, sex determination occurs in the diploid phase of the life cycle with XX/XY or ZW/ZZ sex chromosomes. However, in early diverging plants and most macroalgae, sex is determined by female (U) or male (V) sex chromosomes in a haploid phase called the gametophyte. Once the U and V chromosomes unite at fertilization to produce a diploid sporophyte, sex determination no longer occurs, raising key questions about the fate of the U and V sex chromosomes in the sporophyte phase. Here, we investigate genetic and molecular interactions of the UV sex chromosomes in both the haploid and diploid phases of the brown alga Ectocarpus. We reveal extensive developmental regulation of sex chromosome genes across its life cycle and implicate the TALE-HD transcription factor OUROBOROS in suppressing sex determination in the diploid phase. Small RNAs may also play a role in the repression of a female sex-linked gene while transition to the diploid sporophyte coincides with major reconfiguration of histone H3K79me2, suggesting a more intricate role for this histone mark in Ectocarpus development than previously appreciated.
DOI: 10.17617/3.jwsrrc
title: Nature_figures

description: Python codes for data processing and plotting
DOI: 10.17617/3.tgoqyo
title: SHARK-capture supporting data

description: Supporting datasets for publication: SHARK-capture identifies functional motifs in intrinsically disordered protein regions
description: SHARK-capture
DOI: 10.17617/3.brukuo
title: Supporting_Data_Ramming_and_Stukenberg_et_al

description: Supporting data for Ramming and Stukenberg et al. 2024. Raw microscope and pulsed-field gel electrophoresis data.
DOI: 10.21233/0bfh-vw33
title: LDDsite3718 water chemistry dataset

description: Raw data for the LDDsite3718 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.a4ljeb
title: Towards the direct simulation of the quasi-biennial oscillation in a global storm-resolving model

description: This dataset provides additional information for the related publication (see below). Details for the content are given in the README.pdf file.
DOI: 10.17617/3.v8kjfv
title: Flux balance analysis for comparison of CORE with other pathways

description: Models and python scripts for flux balance analysis (FBA) of a new-to-nature CO&lt;sub&gt;2&lt;/sub&gt; reduction module, the CORE cycle.
DOI: 10.18419/darus-4454
title: Replication Data for: "Modeling Load-, Velocity-, and Temperature-Dependent Transmission Errors of Cycloidal Drives for Industrial Robots Using Fourier Series"

description: This dataset contains all identification and validation data used in the conference paper "Modeling Load-, Velocity-, and Temperature-Dependent Transmission Errors of Cycloidal Drives for Industrial Robots Using Fourier Series".
The experimental data was recorded using an experimental setup to identify the transmission error of cycloidal drives as described in the paper.
The data is divided into the two folders, "identification" and "validation" containing one file per measurement. The file names contain the parameter combination of load torque 
tau_load in N m, input-side velocity theta_dot in rad/s and lubricant temperature T in °C. Each measurement file contains a table with the input-side position theta in rad in the first column and the transmission error theta_TE in rad in the second column.
The MATLAB script "&lt;a href="https://darus.uni-stuttgart.de/file.xhtml?fileId=365895"&gt;plot_figures.m&lt;/a&gt;" can be used to plot the position domain data from the figures 3 to 6 in the publication.&lt;br/&gt;
The function "&lt;a href="https://darus.uni-stuttgart.de/file.xhtml?fileId=366140&version=1.0"&gt;read_data.m&lt;/a&gt;" is applied to import all measurement data into two MATLAB structure arrays "identification" and "validation".
description: MATLAB, 2024b
description: Minor description update
DOI: 10.34810/data51/1
title: Data_from_Martinez-Subira_et_al_2021_Plants_2021_10.tab

description: :unav
DOI: 10.34810/data51/2
title: Readme.txt

description: :unav
DOI: 10.21233/escn-v885
title: Tocqueboeuf pollen dataset

description: Raw data for the Tocqueboeuf pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6kx3-hp47
title: Beyshir MS2 pollen surface sample dataset

description: Raw data for the Beyshir MS2 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17617/3.m60t6g
title: Water-vapor based bias correction for CO2 airborne vertical profiles

description: This dataset is associated with the following publication: https://doi.org/10.5194/egusphere-2024-1735. It contains the water vapor mole fractions and bias correction magnitude (2010-2018) to the CO2 mole fractions measured at each airborne vertical profile site in the Amazon. The vertical profile data is freely available at: https://doi.pangaea.de/10.1594/PANGAEA.926834. The flags used to select the best quality data were: ALF: '...' and '..&gt;' , TAB: '...' , TEF: '...' , SAN: '...' and '..&gt;' , 'RBA: '...' . 

The water vapor was extracted from ECMWF-IFS using the STILT model (Lin et al., 2003). The water vapor mole fraction (wv_extr) is reported in % and the CO2 bias correction (bcorr) is in ppm. The bias correction has a systematic and a random component. The column bcorr_std provides the standard deviation of the bias for a given water vapor mole fraction bin of 1% (from 0 to 3%). Note that the standard deviation corresponds to the random component of the error, which is associated with the spread for each 1% bin. For the site RBA, there are 6 flights in which the water vapor correction was not applied because there was a drier installed. Those flights are not included in this dataset and the dates are (DDMMYYYY):

1. 16022018 / 
2. 09032018 /
3. 06042018 /
4. 08052018 /
5. 15072018 /
6. 19092018
DOI: 10.21233/g8mf-sr11
title: Russell diatom surface sample dataset

description: Raw data for the Russell diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rwdw-1852
title: Le Vernay pollen dataset

description: Raw data for the Le Vernay pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ccp9-wk43
title: Lake Kegonsa diatom bottom sample dataset

description: Raw data for the Lake Kegonsa diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.2a4k3z
title: Occurrence Download

description: A dataset containing 374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chrysosplenium ramosum Maxim.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 374 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021496-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/gvw9-6w72
title: Lac du Bonnet ostracode surface sample dataset

description: Raw data for the Lac du Bonnet ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5y9m-4136
title: LDDsite118 water chemistry dataset

description: Raw data for the LDDsite118 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5519/qd.lqa5lbdq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2600 records)
DOI: 10.5281/zenodo.15364827
title: Physicochemical Characterisation of Olive Mill Wastewaters based on Extraction Methods and Filtration Levels
DOI: 10.5281/zenodo.15364828
title: Physicochemical Characterisation of Olive Mill Wastewaters based on Extraction Methods and Filtration Levels
DOI: 10.21233/xb2m-ma36
title: Dual Pond pollen surface sample dataset

description: Raw data for the Dual Pond pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.