cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gxpjdm3w6x.1
title: Code for: Combined species occurrence and density predictions to improve marine spatial management

description: R code as used for the publication "Combined species occurrence and density predictions to improve marine spatial management" in Ocean and Coastal Management (2021). Code was used to create a species distribution model to predict probability of occurrence and density for two bivalve species in New Zealand estuaries . Code uses boosted regression trees in the dismo package, combined with a bootstrap approach (code provided by FS, Stephenson et al. 2020). This code combines the probability of occurrence and abundance BRT's and spatial predictions. 3rd party data is not made publicly available yet, so randomly generated data is used as an example. See data availability statement in publication for access to original data.
DOI: 10.17632/95jt4wb5zn.1
title: Prevalence of stress urinary incontinence in female farmers with mechanical low back pain owing to prolonged standing: A cross-sectional study.

description: ABSTRACT Background: Stress urinary incontinence is a common disorder, it is an involuntary loss of urine, and occurs because the pressure of the abdominal is increased.1 It is also due to the malfunction of the urethral sphincter or there is a weakness of the urethra2. Around 4%-14% of younger women and 12%, -35% of older women are affected by stress urinary incontinence.3 Mechanical low back pain is also the most common musculoskeletal disability among the population, back pain is due to irregular stress and strain on muscles of the spine, mechanical pain is the pain that arises from the spine, intervertebral disc4. According to the older studies as said that the low back pain is prevalent in adults between 60% -80%.5 Purpose: To evaluate the relationship between prolonged standing and stress urinary incontinence in female farmers with low back pain. x Method: Female farmers 35 years to 55 years of age were recruited using the purposive sampling technique in the present cross-sectional study. Participants signed the consent form. Assessment included the demographic data of each individual. The demographic data included i.e name, age, gender, and occupation of the individual. The assessment was done using the following two scales which are modified Oswestry low back pain disability index (MODI) and Questionnaires for urinary incontinence (QUID). Result: Out of 77 female farmers participants ( mean age- 45.6, height- 162.6, weight- 71.8, and BMI- 27.4) who having stress urinary incontinence with low back pain is 75% and having urge incontinence with low back pain is 25%. Therefore, the result of this present study shows the prevalence of stress urinary incontinence in female farmers with mechanical low back pain owing to prolonged standing is 75%. Conclusion: Stress urinary incontinence is a common disorder, it is an involuntary loss of urine, and occurs because the pressure of the abdominal is increased.1 It had been seen a higher prevalence of stress urinary incontinence in female farmers with mechanical low back pain.
DOI: 10.5281/zenodo.4769741
title: Pyracantha coccinea SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4769740
title: Pyracantha coccinea SPAdes preassembly

description: .
DOI: 10.17632/vmt87cy825.1
title: Original data of "CCL3 in bone marrow microenvironment causes trabecular bone loss and bone marrow adiposity via triggering the imbalance between osteogenic and adipogenic differentiation of BMSCs in aged mice"

description: Original data of "CCL3 in bone marrow microenvironment causes trabecular bone loss and bone marrow adiposity via triggering the imbalance between osteogenic and adipogenic differentiation of BMSCs in aged mice"
DOI: 10.17632/pfh54tp77k.1
title: HA & OLEA Dataset

description: This document contains the data of students' responses about their higher ability information and using online learning environment activities in the format of e-portfolio. The e-portfolio is constructed by using google classroom. The students in this study are the learners in higher education, especially for the students of ESM of class 2019.
DOI: 10.17632/dr6bk5wv5c.2
title: Problem instances for the parallel serial-batch scheduling problem with incompatible job families, sequence-dependent setup times, and arbitrary sizes

description: The data set provides instances for the parallel serial-batch scheduling problem with incompatible job families, sequence-dependent setup times, and arbitrary sizes. The instances are classified by the following characteristics: - number of machines (m= 1, 3, 4, 5, or 10) - number of jobs (n= 15, 30, 60, 100, 200, or 400) - number of incompatible job families (q= 3, 5, 10, or 20) - distribution of jobs to families (jtfam= uniform distribution (UD) or normal distribution (ND)) - capacity requirement scenarios defining job sizes (crs=CRS1 with [1, 12], CRS2 with [1, 25], CRS3 with [1, 50], or CRS4 with [13, 38]) - setup time severity factor (eta= 0.25 or 0.75) - tardiness factor (tf= 0.3 or 0.6) - due date range factor (rdd= 0.5 or 2.5) The maximum batch capacity (bc) is set to 50 for all instances. Job processing times and weights are drawn from discrete uniform distributions with the parameters [1, 100] and [1, 10]. All the scheduling relevant data is given within the files, whereby each file represents one problem instance. A unique identifier is given by the filename and also in the text file itself. In addition, best known objective values for several solution methods are included. The set S1 contains small instances with up to 60 jobs, whereas set S2 contains large instances with up to 400 jobs. Because not all instance characteristics combinations are reasonable with regard to batch capacity requirement scenarios, instance sets are restricted to those combinations with a sufficiently large approximated number of batches per machine. The last value of the folder names indicates the number of instances with the corresponding characteristics). More details about the problem instances and solution methods are given in the research paper "Scheduling parallel serial-batch processing machines with incompatible job families, sequence-dependent setup times and arbitrary sizes".
DOI: 10.23729/e50963c2-c40c-4001-8185-a5f3173b65d7
title: Matlab codes to implement the DeepVQCS method proposed in "Low-Complexity Vector Quantized Compressed Sensing via Deep Neural Networks" (M. Leinonen and M. Codreanu)

description: Matlab codes to realize the DeepVQCS architecture and its training proposed in the journal paper by M. Leinonen and M. Codreanu, "Low-Complexity Vector Quantized Compressed Sensing via Deep Neural Networks", IEEE Open Journal of the Communications Society, Vol. 1, pp. 1278 - 1294, Aug. 2020. DOI: 10.1109/OJCOMS.2020.3020131
DOI: 10.17632/d79hs4m47y.1
title: Programs for "Formal registration and informal firms in Cambodia" by Kiyoyasu Tanaka

description: Codes for summary statistics and estimation results; Codes1 for DID estimation, Codes2 for DID-PSM estimation, and Codes for PSW estimation.
DOI: 10.17632/rsvkv43b5r.1
title: Replication Data for "Class Warfare: Political Exclusion of the Poor and the Roots of Social-Revolutionary Terrorism, 1860-1950"

description: Replication data and do-file for the article "Class Warfare: Political Exclusion of the Poor and the Roots of Social-Revolutionary Terrorism, 1860-1950"
DOI: 10.17632/s993d86xvm.1
title: Factors related to teaching quality

description: Data repository of Factors related to teaching quality investigation
DOI: 10.17632/rvs6gf4sn2.2
title: Multichannel pulse high-current driver of magnetic actuator

description: Magnetic linear actuators are useful in many areas. Their significant advantage is the ease of control by regulating the current, but on the other hand, high electrical power is required to obtain a large continuous force, acceleration and stroke from a device with small dimensions. In this article, we present a complete open-source system consisting of simple movable iron magnetic actuators, a four-channel controller and dedicated software. The graphical user interface makes it easy to design the sequence of piston strokes, including time of the start, duration of the movement and force for each stroke separately. The controller supplies high intensity impulses, thanks to which it is possible to obtain high force, acceleration and stroke from small-sized coils with a voltage that is safe for use. The system was originally developed as a reagent syringe driver to control the rapid mixing process to study the kinetics of enzymatic reactions. However, this driver may also be useful in a number of other scientific and non-scientific applications.
DOI: 10.17632/m2wm6xhjj5.2
title: Data for different plastic category soils mixed with waste plastic materials for soil reinforcement

description: Waste plastic materials have been causing environmental pollution problems. Soil reinforcement using waste plastic materials can improve the strength of the soil. Hence, it will be beneficial for different civil engineering structures like earth retaining structures, embankment, foundations, road construction, etc. The data on geotechnical properties of soils having medium plastic, high plastic and low plastic category were generated for the different locations of Kanpur city, India. Waste plastics like polythene bags and plastic bottles cut into uniform small pieces, made perforated, mixed in different proportions with these soils and analyzed for different geotechnical properties. The researcher can use these data to find out the bearing capacity and California bearing ratio for the different proportions of the reinforced soils. In addition, these data can help for carrying out study for other locations of the Kanpur city.
DOI: 10.17632/hgskyckxb7.2
title: Gut microbiome alterations in high-fat-diet-fed mice are associated with antibiotic tolerance

description: Raw Metabolomics data, the data set is related to figure 3d, Extended Data Fig. 5 and 6.
DOI: 10.17632/hgskyckxb7.1
title: Gut microbiome alterations in high-fat-diet-fed mice are associated with antibiotic tolerance

description: Raw Metabolomics data, the data set is related to figure 3d, Extended Data Fig. 5 and 6.
DOI: 10.17632/w6yskg3ffy.3
title: Hornet 7: Network Dataset of Geographically Placed Honeypots

description: Hornet 7 is a dataset of seven days of network traffic attacks captured in cloud servers used as honeypots to help understand how geography may impact the inflow of network attacks. The honeypots were placed in eight different geographical locations: Amsterdam, London, Frankfurt, San Francisco, New York, Singapore, Toronto, Bangalore. The data was captured in April 2021. The eight cloud servers were created and configured simultaneously following identical instructions. The network capture was performed using the Argus network monitoring tool in each cloud server. The cloud servers had only one service running (SSH on a non-standard port) and was fully dedicated to be used as a honeypot. No honeypot software was used in this dataset. The dataset consists of eight scenarios, one for each geographically located cloud server. Each scenario contains bidirectional NetFlow files in the following format: - hornet7-biargus.tar.gz: all scenarios with bidirectional NetFlow files in Argus binary format; - hornet7-netflow-v5.tar.gz: all scenarios with bidirectional NetFlow v5 files in CSV format; - hornet7-netflow-extended.tar.gz: all scenarios with bidirectional NetFlows files in CSV format containing all features provided by Argus. - hornet7-full.tar.gz: download all the data (biargus, netflow v5 and extended netflows)
DOI: 10.17632/t59dxscfyj.1
title: English and Persian versions of CAQs

description: Persian versions of Contrast avoidance questionnaires are provided below to research the contrast avoidance model (CAM) on Persian-speaking samples.
DOI: 10.17632/h6xbt6hmf6.1
title: LINF_120009000

description: protein of unknown function - conserved; Leishmania infantum
DOI: 10.17632/rry7bhc2f2.2
title: Hornet 15: Network Dataset of Geographically Placed Honeypots

description: Hornet 15 is a dataset of fifteen days of network traffic attacks captured in cloud servers used as honeypots to help understand how geography may impact the inflow of network attacks. The honeypots are located in eight different cities: Amsterdam, London, Frankfurt, San Francisco, New York, Singapore, Toronto, Bangalore. The data was captured in April and May 2021. The eight cloud servers were created and configured simultaneously, following identical instructions. The network capture was performed using the Argus network monitoring tool in each cloud server. The cloud servers had only one service running (SSH on a non-standard port) and were fully dedicated as a honeypot. No honeypot software was used in this dataset. The dataset consists of eight scenarios, one for each geographically located cloud server. Each scenario contains bidirectional NetFlow files in the following format: - hornet15-biargus.tar.gz: all scenarios with bidirectional NetFlow files in Argus binary format; - hornet15-netflow-v5.tar.gz: all scenarios with bidirectional NetFlow v5 files in CSV format; - hornet15-netflow-extended.tar.gz: all scenarios with bidirectional NetFlows files in CSV format containing all features provided by Argus. - hornet15-full.tar.gz: download all the data (biargus, NetFlow v5, and extended NetFlows)
DOI: 10.17632/kdz74j79vz.1
title: LINF_120009100

description: 3'-nucleotidase/nuclease; Leishmania infantum
DOI: 10.17632/bp5fmwvwvx.1
title: LINF_120009300

description: Eukaryotic protein of unknown function (DUF866); Leishmania infantum
DOI: 10.17632/9t8xc8wz6h.1
title: LINF_120009400

description: protein of unknown function - conserved; Leishmania infantum
DOI: 10.17632/bmfn3ynt46.1
title: LINF_120009700

description: protein of unknown function - conserved; Leishmania infantum
DOI: 10.17632/vgrmnd33bd.1
title: Persian Versions of Contrast Avoidance Questionnaires (CAQs)

description: Persian versions of Contrast avoidance questionnaires are provided below to research the contrast avoidance model (CAM) on Persian-speaking samples.
DOI: 10.17632/34g8vwc7zb.1
title: Comprehensive validation of a diagnostic strategy for sequencing genes with one or multiple pseudogenes, using pseudoxanthoma elasticum as a model

description: We propose a diagnostic strategy for the molecular diagnosis of genes with one or more known pseudogene(s) with next-generation sequencing (NGS), using pseudoxanthoma elasticum and ABCC6 as an example. Indeed, the use of NGS for analysis of such genes can be complicated by false positive and negative results. We show in this paper that in contrast to whole exome sequencing, a combined approach of PCR-based targeted enrichment with an adapted mapping algorithm circumvents aspecificities due to pseudogenes in a reliable way.
DOI: 10.5281/zenodo.4769762
title: Hippocampus babouri SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4769761
title: Hippocampus babouri SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14573739
title: Municipal migration networks – Brazil, 1991, 2000, 2010

description: Collection of files with intermunicipal migration data (all municipalities in Brazil) according to the Demographic Censuses of 1991, 2000 and 2010. The migratory matrices were processed to enable them to be visualized and analyzed based on a network analysis.
DOI: 10.6084/m9.figshare.14454261
title: Metadata record for the article: The temporal mutational and immune tumour microenvironment remodelling of HER2-negative primary breast cancers

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “The temporal mutational and immune tumour microenvironment remodelling of HER2-negative primary breast cancers”. The related study characterised the mutational, gene expression, pathway enrichment and tumour-infiltrating lymphocytes (TILs) dynamics across different timepoints of 35 HER2-negative primary breast cancer patients receiving neoadjuvant eribulin therapy (SOLTI-1007 NEOERIBULIN -NCT01669252). Subject of data: <i>Homo sapiens</i> Sample size: 35 Population characteristics: The stage I-II HER2-negative breast cancer patients were treated at the Vall Hebron Institute of Oncology, Barcelona during the years 2012 and 2013 in the open-label, single-arm SOLTI-1007 NEOERIBULIN phase II clinical trial (NCT01669252). <b>Data access</b> The whole exome sequencing bam files have been deposited at the <i>European Genome-phenome Archive</i> (<i>EGA</i>), which is hosted by the EBI and the CRG, under the study accession number https://identifiers.org/ega.study:EGAS00001004953 and dataset accession number https://identifiers.org/ega.dataset:EGAD00001006980. The decreased and increased pathway enrichment analyses are available in the files ‘decreased_pathway_enrichment_analysis.xlsx’ and ‘increased_pathway_enrichment_analysis.xlsx’, which can be accessed via GitHub at https://github.com/NeoVaCan/NPJBCANCER_DeMattos_2021/tree/main/Data_Supp_Table2.The supplementary tables of the related article are also available in Excel format as part of this figshare data record. The patient metadata are contained in the file ‘Patient metadata.xlsx’. Patient tumour-infiltrating lymphocytes data are contained in the file ‘Patient_TILsMeans_PAM50_ORR_HR_status_Neoprep_Maf.csv’. These files are not publicly available for the following reason: data contain information that could compromise research participant privacy. However, the data can be made available upon reasonable request to the corresponding author. <b>Corresponding author(s) for this study</b> Dr. Leticia De Mattos Arruda, IrsiCaixa, Germans Trias i Pujol University Hospital Germans Trias i Pujol Research Institute, Badalona, Spain, 08916. Phone: T +34 934 656 374 (ext - 127) e-mail: ldemattos@irsicaixa.es.<br> <br> <b></b> <b>Study approval </b> The Ethics Committee of the Vall Hebron University Hospital, Barcelona, Spain approved the study.
DOI: 10.6084/m9.figshare.14454261.v1
title: Metadata record for the article: The temporal mutational and immune tumour microenvironment remodelling of HER2-negative primary breast cancers

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “The temporal mutational and immune tumour microenvironment remodelling of HER2-negative primary breast cancers”. The related study characterised the mutational, gene expression, pathway enrichment and tumour-infiltrating lymphocytes (TILs) dynamics across different timepoints of 35 HER2-negative primary breast cancer patients receiving neoadjuvant eribulin therapy (SOLTI-1007 NEOERIBULIN -NCT01669252). Subject of data: <i>Homo sapiens</i> Sample size: 35 Population characteristics: The stage I-II HER2-negative breast cancer patients were treated at the Vall Hebron Institute of Oncology, Barcelona during the years 2012 and 2013 in the open-label, single-arm SOLTI-1007 NEOERIBULIN phase II clinical trial (NCT01669252). <b>Data access</b> The whole exome sequencing bam files have been deposited at the <i>European Genome-phenome Archive</i> (<i>EGA</i>), which is hosted by the EBI and the CRG, under the study accession number https://identifiers.org/ega.study:EGAS00001004953 and dataset accession number https://identifiers.org/ega.dataset:EGAD00001006980. The decreased and increased pathway enrichment analyses are available in the files ‘decreased_pathway_enrichment_analysis.xlsx’ and ‘increased_pathway_enrichment_analysis.xlsx’, which can be accessed via GitHub at https://github.com/NeoVaCan/NPJBCANCER_DeMattos_2021/tree/main/Data_Supp_Table2.The supplementary tables of the related article are also available in Excel format as part of this figshare data record. The patient metadata are contained in the file ‘Patient metadata.xlsx’. Patient tumour-infiltrating lymphocytes data are contained in the file ‘Patient_TILsMeans_PAM50_ORR_HR_status_Neoprep_Maf.csv’. These files are not publicly available for the following reason: data contain information that could compromise research participant privacy. However, the data can be made available upon reasonable request to the corresponding author. <b>Corresponding author(s) for this study</b> Dr. Leticia De Mattos Arruda, IrsiCaixa, Germans Trias i Pujol University Hospital Germans Trias i Pujol Research Institute, Badalona, Spain, 08916. Phone: T +34 934 656 374 (ext - 127) e-mail: ldemattos@irsicaixa.es.<br> <br> <b></b> <b>Study approval </b> The Ethics Committee of the Vall Hebron University Hospital, Barcelona, Spain approved the study.
DOI: 10.25919/0p3x-qd97
title: Parkes observations for project P737 semester 2021APRS_01

description: The aim of this proposal is to carry out tests of the new backend instruments which cannot be carried out during standard maintenance periods. The scheduled time is used to measure beam shapes, determine polarisation calibration solutions and commission the National Facility observing modes for the new wide-band receiver.
DOI: 10.6084/m9.figshare.14538252
title: Metadata record for the article: Whole-exome sequencing identifies somatic mutations and intratumor heterogeneity in inflammatory breast cancer

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “Whole-exome sequencing identifies somatic mutations and intratumor heterogeneity in inflammatory breast cancer”. The related study aimed to obtain a better understanding of the genomic landscape and intratumour heterogeneity (ITH) in inflammatory breast cancer (IBC) by conducting whole-exome sequencing of 16 tissue samples (12 tumour and four normal) from six hormone-receptor positive IBC patients, analysing somatic mutations and copy number aberrations, and inferring subclonal structures to demonstrate ITH. Type of data: whole exome sequencing Subject of data: <i>Homo sapiens</i> Sample size: 6 Population characteristics: The participants' demographic and clinical characteristics including age, gender, hormone receptors status, HER2 status, tumour grade were collected. Recruitment: Patients in the discovery cohort were recruited from Thomas Jefferson University Hospital from 1993 to 2012. All the patients were IBC patients. <b>Data access</b> Release of full genetic sequencing data was not included in the IRB protocol. Thus, only sequencing data related to the related article have been released, and these data have been deposited in NCBI <i>Sequence Read Archive</i> (SRA) with the accession code https://identifiers.org/ncbi/bioproject:PRJNA713359. Additional files underlying the figures and supplementary figures of the related article are available as part of this <i>figshare </i>data record, and a list of which file underlies which figure/supplementary figure is included in the file ‘Luo_et_al_2021_underlying_data_files_list.xlsx’. <b>Corresponding author(s) for this study</b> Hushan Yang, PhD, Department of Medical Oncology, Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107, USA. Tel: 215-503-6521; Fax: 215-503-9506; Email: hushan.yang@jefferson.edu. <br> <b>Study approval </b> This study was approved by the Institutional Review Board of Thomas Jefferson University.
DOI: 10.5281/zenodo.4769808
title: CS1_Tamaño y composición de la muestra

description: Base de dato Cañada Seca-1 (CS-1)
DOI: 10.5281/zenodo.4439186
title: CS1_Tamaño y composición de la muestra

description: Base de dato Cañada Seca-1 (CS-1)
DOI: 10.5281/zenodo.4769775
title: QReCC - Question Rewriting in Conversational Context

description: QReCC contains 14K conversations with 81K question-answer pairs. See the README for more information.