cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21585537.v1
title: ReLERNN results, recombination maps

description: Results of RELERNN to estimate recombination along the genome
DOI: 10.15468/dl.csfnbj
title: Occurrence Download

description: A dataset containing 4497 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchophorus ferrugineus (A.G.Olivier, 1791)"
 ]
}

 The dataset includes 4497 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042742-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5jd4q15p
title: MassIVE MSV000095485 - 2024-0730_S. pactum quad mutant feeding massIVE
title: Feeding experiments of S. pactum quad mutant No conglobatins, pactamycins, NFAT-133, and most piericidins piericidin module five knockout
DOI: 10.6084/m9.figshare.21585561
title: Genetic Diversity Statistics

description: genetic diversity statistics, pi, FST, dXY, tajima's D
DOI: 10.6084/m9.figshare.21585561.v1
title: Genetic Diversity Statistics

description: genetic diversity statistics, pi, FST, dXY, tajima's D
DOI: 10.15468/dl.35x6mm
title: Occurrence Download

description: A dataset containing 84696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phalacrocoracidae"
 ]
}

 The dataset includes 84696 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042743-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ya99c7
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Tropicos Specimens Non-MO",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cucurbitella asperata (Gillies ex Hook. & Arn.) Walp."
 ]
}

 The dataset includes 115 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042744-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xezhxp
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bahamas",
 "DatasetKey is one of (NMNH Extant Specimen Records (USNM, US), UF Invertebrate Zoology, DMNS Marine Invertebrate Collection (Arctos), Museum of Comparative Zoology, Harvard University)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cerionidae",
 "Year 1990-2024"
 ]
}

 The dataset includes 239 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042745-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vu9wr8
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limaria hirasei (Pilsbry, 1901)"
 ]
}

 The dataset includes 84 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042746-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgsvrf
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diapheromera velii Walsh, 1864"
 ]
}

 The dataset includes 249 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042747-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13137330
title: Embedded HuffPost New Category Dataset

description: This dataset was created by embedding the concatenation of title and short description of each entry in the HuffPost news category dataset, ordered by timestamp, using OpenAI's text-embedding-3-small embedding. Usage is subject to Huffington Post's user agreement and OpenAI's term of use.
DOI: 10.5281/zenodo.13137331
title: Embedded HuffPost New Category Dataset

description: This dataset was created by embedding the concatenation of title and short description of each entry in the HuffPost news category dataset, ordered by timestamp, using OpenAI's text-embedding-3-small embedding. Usage is subject to Huffington Post's user agreement and OpenAI's term of use.
DOI: 10.6084/m9.figshare.25641108
title: Mitogenomic profiling of <i>Marcia recens</i> (Holten, 1802): a step towards taxonomic resolution of India's Ashtamudi short-neck clam

description: The Ashtamudi short-neck clam forms a significant fishery resource holding India’s first Marine Stewardship Council Certification. The taxonomic classification of this particular clam has engendered debate regarding its proper nomenclature. The present study aims to provide its first comprehensive mitogenome profile from the type locality to address the existing taxonomic ambiguity. The mitogenome assembled using the genome skimming method had 17,991 base-pair length with 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and control region. Phylogenetic analysis based on the concatenated data set of PCGs and rRNAs from 47 representative species of Veneridae grouped all species including short-neck clams from the subfamily Tapetinae into a single clade. This analysis also revealed the polyphyly of the genus <i>Marcia.</i> Nevertheless, the short-neck clam co-clustered with <i>Marcia recens</i> from Chinese waters. Subsequent mitochondrial gene order, genetic distance and morphological analyses substantiated the closer relationship of this clam to the genus <i>Marcia</i>, analogous to the phylogenetic output. The genomic data from the type locality provides additional molecular and phylogenetic evidence for the classification of short-neck clam in the genus <i>Marcia</i>. This will also help to address long-standing taxonomic uncertainties surrounding this species, offering valuable information critical for management and conservation of the resource.
DOI: 10.6084/m9.figshare.25475277.v1
title: From port to port: the invasive bivalve <i>Mytilopsis</i> cf. <i>sallei</i> (Dreissenidae) is confirmed in southeastern Brazil

description: This study records a new introduction of the estuarine, invasive bivalve <i>Mytilopsis</i> cf. <i>sallei</i> in southeastern Brazil. The new record lies close to the largest port of the country (the Port of Santos, in São Paulo state), raising serious concerns related to the probable expansion of this bivalve in future years. Two out of five sampling stations showed live specimens of <i>M</i>. cf. <i>sallei</i> in the soft sediment, in sites with polluted waters and salinity below 20 ppt, reaching a maximum abundance of 1983 specimens/m<sup>2</sup>. According to COI evidence, two lineages of <i>M</i>. cf. <i>sallei</i> are present in the region, one of which was previously recorded from northeastern Brazil (where it is probably exotic), and another previously recorded from Florida (native) and Asia (exotic). Potential sources for the introduction are discussed, as well as the role of ballast water <i>vs</i>. biofouling as vectors. Because adults of <i>M</i>. cf. <i>sallei</i> are tolerant to long periods in marine waters, it is possible that biofouling from distant sources contributed to this introduction. In order to enable a robust mitigation plan, a complete spatial evaluation for the presence of this bivalve should be conducted in the Santos Estuary.
DOI: 10.6084/m9.figshare.25641108.v1
title: Mitogenomic profiling of <i>Marcia recens</i> (Holten, 1802): a step towards taxonomic resolution of India's Ashtamudi short-neck clam

description: The Ashtamudi short-neck clam forms a significant fishery resource holding India’s first Marine Stewardship Council Certification. The taxonomic classification of this particular clam has engendered debate regarding its proper nomenclature. The present study aims to provide its first comprehensive mitogenome profile from the type locality to address the existing taxonomic ambiguity. The mitogenome assembled using the genome skimming method had 17,991 base-pair length with 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and control region. Phylogenetic analysis based on the concatenated data set of PCGs and rRNAs from 47 representative species of Veneridae grouped all species including short-neck clams from the subfamily Tapetinae into a single clade. This analysis also revealed the polyphyly of the genus <i>Marcia.</i> Nevertheless, the short-neck clam co-clustered with <i>Marcia recens</i> from Chinese waters. Subsequent mitochondrial gene order, genetic distance and morphological analyses substantiated the closer relationship of this clam to the genus <i>Marcia</i>, analogous to the phylogenetic output. The genomic data from the type locality provides additional molecular and phylogenetic evidence for the classification of short-neck clam in the genus <i>Marcia</i>. This will also help to address long-standing taxonomic uncertainties surrounding this species, offering valuable information critical for management and conservation of the resource.
DOI: 10.6084/m9.figshare.25475277
title: From port to port: the invasive bivalve <i>Mytilopsis</i> cf. <i>sallei</i> (Dreissenidae) is confirmed in southeastern Brazil

description: This study records a new introduction of the estuarine, invasive bivalve <i>Mytilopsis</i> cf. <i>sallei</i> in southeastern Brazil. The new record lies close to the largest port of the country (the Port of Santos, in São Paulo state), raising serious concerns related to the probable expansion of this bivalve in future years. Two out of five sampling stations showed live specimens of <i>M</i>. cf. <i>sallei</i> in the soft sediment, in sites with polluted waters and salinity below 20 ppt, reaching a maximum abundance of 1983 specimens/m<sup>2</sup>. According to COI evidence, two lineages of <i>M</i>. cf. <i>sallei</i> are present in the region, one of which was previously recorded from northeastern Brazil (where it is probably exotic), and another previously recorded from Florida (native) and Asia (exotic). Potential sources for the introduction are discussed, as well as the role of ballast water <i>vs</i>. biofouling as vectors. Because adults of <i>M</i>. cf. <i>sallei</i> are tolerant to long periods in marine waters, it is possible that biofouling from distant sources contributed to this introduction. In order to enable a robust mitigation plan, a complete spatial evaluation for the presence of this bivalve should be conducted in the Santos Estuary.
DOI: 10.7266/n7sq8xs9
title: CTD data on Alabama shelf, April 2016
DOI: 10.15468/dl.z965mc
title: Occurrence Download

description: A dataset containing 3238 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Abronia maritima Nutt. ex S.Watson)"
 ]
}

 The dataset includes 3238 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042749-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn2etg
title: Occurrence Download

description: A dataset containing 6203 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Abronia latifolia Eschsch.)"
 ]
}

 The dataset includes 6203 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042750-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5x53k
title: Occurrence Download

description: A dataset containing 2907921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 2907921 records from 693 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042748-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.peavpm
title: Occurrence Download

description: A dataset containing 4905 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "Year 2017-2024"
 ]
}

 The dataset includes 4905 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042751-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10400223
title: Dataset for "X-ray near-field ptychographic nanoimaging of cement pastes" paper

description: Dataset for paper (doi:) with the abstract: "The hydration processes of Portland cements (PC) and blends are complicated as there are many components with great heterogeneity at different length scales. Thus, 3D nanoimaging techniques with high spatial resolution and scanning large fields of view are needed. Here, synchrotron X-ray near-field ptychographic tomography is used to investigate four pastes within 0.2 mm thick capillaries: PC with CaCl2, PC hydration enhanced by C-S-H nucleation seeding, PC partly substituted with metakaolin, and PC partly substituted with metakaolin and limestone. Data analysis emphasis has been placed on the characterisation of amorphous components: (i) C-S-H and C-A-S-H gels; (ii) iron aluminium siliceous hydrogarnets; (iii) metakaolin; and (iv) aluminium carboaluminate, AFm-like. Synchrotron ptychotomography yields electron density and absorption coefficient tomograms and the resulting bivariate plots are instrumental for characterising these amorphous components. The attained spatial resolution, ~220 nm, with very good contrast allowed us to determine nanofeatures including mass densities and spatial distributions of amorphous components. For instance, the C-S-H gel mass density differences between the two type of accelerated pastes are detailed."
description: Acknowledgement: This research has been partly supported by the research grant PID2019-104378RJ-I00 which is co-funded by ERDF. We acknowledge the Paul Scherrer Institut, Villigen, Switzerland for provision of synchrotron radiation beamtime at cSAXS beamline of the SLS, proposal number 20210147.
DOI: 10.5281/zenodo.10400224
title: Dataset for "X-ray near-field ptychographic nanoimaging of cement pastes" paper

description: Dataset for paper (doi:) with the abstract: "The hydration processes of Portland cements (PC) and blends are complicated as there are many components with great heterogeneity at different length scales. Thus, 3D nanoimaging techniques with high spatial resolution and scanning large fields of view are needed. Here, synchrotron X-ray near-field ptychographic tomography is used to investigate four pastes within 0.2 mm thick capillaries: PC with CaCl2, PC hydration enhanced by C-S-H nucleation seeding, PC partly substituted with metakaolin, and PC partly substituted with metakaolin and limestone. Data analysis emphasis has been placed on the characterisation of amorphous components: (i) C-S-H and C-A-S-H gels; (ii) iron aluminium siliceous hydrogarnets; (iii) metakaolin; and (iv) aluminium carboaluminate, AFm-like. Synchrotron ptychotomography yields electron density and absorption coefficient tomograms and the resulting bivariate plots are instrumental for characterising these amorphous components. The attained spatial resolution, ~220 nm, with very good contrast allowed us to determine nanofeatures including mass densities and spatial distributions of amorphous components. For instance, the C-S-H gel mass density differences between the two type of accelerated pastes are detailed."
description: Acknowledgement: This research has been partly supported by the research grant PID2019-104378RJ-I00 which is co-funded by ERDF. We acknowledge the Paul Scherrer Institut, Villigen, Switzerland for provision of synchrotron radiation beamtime at cSAXS beamline of the SLS, proposal number 20210147.
DOI: 10.5281/zenodo.13137373
title: Genomic signature for malignant tumour progression in cervical cancer

description: To investigate the clinical genomic signatures associated with tumor progression, we performed genomic sequencing on patients with cervical cancer, including primary, recurrent, and metastatic tumor tissues, and obtained their somatic mutation and copy number alteration profiles.
DOI: 10.5281/zenodo.13137371
title: Database of Study SARS-CoV-2 Antibody Level after Homologous and Heterologous Booster Vaccines an 18-month Longitudinal Observational Cohort Study in Indonesia (Ardyanto et el., 2024)
title: Data of Ardyanto et al. 2024
DOI: 10.5281/zenodo.13137372
title: Database of Study SARS-CoV-2 Antibody Level after Homologous and Heterologous Booster Vaccines an 18-month Longitudinal Observational Cohort Study in Indonesia (Ardyanto et el., 2024)
title: Data of Ardyanto et al. 2024
DOI: 10.15468/dl.6b4vjg
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Harvard University Herbaria: All Records",
 "TaxonKey is Aquilegia chaplinei Standl. ex Payson"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042754-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tf95rh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Harvard University Herbaria: All Records",
 "TaxonKey is one of (Aquilegia desertorum (M.E.Jones) Cockerell ex A.Heller, Aquilegia desertorum (M.E.Jones) Cockerell)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042756-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z8jqrx
title: Occurrence Download

description: A dataset containing 15510 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceriops tagal (Perr.) C.B.Rob."
 ]
}

 The dataset includes 15510 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042755-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ryms3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Harvard University Herbaria: All Records",
 "TaxonKey is Aquilegia einseleana F.W.Schultz"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042757-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25843528
title: Anexo - DINÂMICAS DE INTERAÇÃO NA SÉRIE FRIENDS.pdf

description: The file is an attachment to the manuscript Piccolo Abel & Kivistö de Souza (2024). <i>Interaction Dynamics on the TV series Friends: A pragmatic dialogue between face threatening acts and humor</i>. Revista do Gelne, v.26, 2.
DOI: 10.6084/m9.figshare.25843528.v1
title: Anexo - DINÂMICAS DE INTERAÇÃO NA SÉRIE FRIENDS.pdf

description: The file is an attachment to the manuscript Piccolo Abel & Kivistö de Souza (2024). <i>Interaction Dynamics on the TV series Friends: A pragmatic dialogue between face threatening acts and humor</i>. Revista do Gelne, v.26, 2.
DOI: 10.15468/dl.shu6dj
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oophaga lehmanni (Myers & Daly, 1976)"
 ]
}

 The dataset includes 856 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042758-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3as2s
title: Occurrence Download

description: A dataset containing 695910 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus suber L."
 ]
}

 The dataset includes 695910 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042753-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17104656
title: ETV4 mediated lncRNA C2CD4D-AS1 overexpression contributes to the malignant phenotype of lung adenocarcinoma cells via miR-3681-3p/NEK2 axis

description: Lung adenocarcinoma (LUAD) is originated from the mucus-producing glands of the lungs. The involvement of long noncoding RNAs (lncRNAs) has been discovered in multiple diseases. In the present research, we aimed to unmask the role of C2CD4D and THEM5 antisense RNA 1 (C2CD4D-AS1) in LUAD. RT-qPCR or western blot analysis was respectively applied in the detection of RNA or protein expressions. The function of C2CD4D-AS1 in LUAD was assessed by functional assays. Through ChIP, RNA pull down, DNA pull down, RIP and luciferase reporter assays, the in-depth regulatory mechanism of C2CD4D-AS1 in LUAD was explored. C2CD4D-AS1 was dramatically overexpressed in LUAD tissues and cell lines. As a result, depletion of C2CD4D-AS1 significantly repressed cell proliferation, migration, invasion and stimulated cell apoptosis in LUAD. Mechanistically, ETS variant transcription factor 4 (ETV4) activated the transcription of C2CD4D-AS1 and stimulated its up-regulation in LUAD cells, thus affecting LUAD cell biological functions. Furthermore, C2CD4D-AS1 sponged microRNA-3681-3p (miR-3681-3p) and regulated NIMA-related kinase 2 (NEK2), thus participating in modulating LUAD cell biological behaviors. To conclude, C2CD4D-AS1 up-regulation induced by ETV4 enhanced NEK2 expression by sequestering miR-3681-3p to contribute to the malignant behaviors of LUAD cells.