cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9838418.v1
title: Additional file 3: of Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer’s and Parkinson’s disease

description: Table S2. Proteins identified in CSF using tandem mass spectrometry. (XLS 2418 kb)
DOI: 10.6084/m9.figshare.9838439
title: Additional file 6: of Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer’s and Parkinson’s disease

description: Table S3. Demographics and biomarker data. (XLS 259 kb)
DOI: 10.6084/m9.figshare.9838439.v1
title: Additional file 6: of Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer’s and Parkinson’s disease

description: Table S3. Demographics and biomarker data. (XLS 259 kb)
DOI: 10.6084/m9.figshare.19799890.v1
title: Additional file 4 of Transcriptome sequencing reveals the differentially expressed lncRNAs and mRNAs in response to cold acclimation and cold stress in Pomacea canaliculata

description: Additional file 4: Table S4. KEGG pathways with differentially expressed genes and target genes from differentially expressed lncRNAs in different groups
DOI: 10.6073/pasta/e12db56950fd959cbbf5741292d16b92
title: Long-term Plant Biomass Monitoring Data from Altamaha River Plant Transition Sites near the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia

description: The Georgia Coastal Ecosystems LTER program (GCE) monitors plant biomass annually to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in a separate data set (PLT-GCEM-1801c). This data set includes cumulative long-term observations of plant stem count, height and biomass per plot and species at 3 Altamaha River transition sites from 2012 to 2022, and will be updated annually to include the prior year observations.
DOI: 10.6084/m9.figshare.19800034
title: Nitrogen input enhances microbial carbon use efficiency by altering plant-microbe-mineral interactions

description: Plant, geochemical and microbial properties in a multi-level field N addition experiment on the Tibetan Plateau.
DOI: 10.6084/m9.figshare.9838574
title: MOESM1 of Molecular characterization and clinical relevance of m6A regulators across 33 cancer types

description: Additional file 1: Table S1. The 33 cancer types in TCGA pancancer project. Table S2. The mutation frequency of m6A regulators across 33 cancer types. Table S3. The CNV amplification frequency of m6A regulators across 33 cancer types. Table S4. The CNV deletion frequency of m6A regulators across 33 cancer types. Table S5. The correlation of m6A regulations and cancer pathways. Table S6. Literature curation of the function for m6A regulators. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.9838574.v1
title: MOESM1 of Molecular characterization and clinical relevance of m6A regulators across 33 cancer types

description: Additional file 1: Table S1. The 33 cancer types in TCGA pancancer project. Table S2. The mutation frequency of m6A regulators across 33 cancer types. Table S3. The CNV amplification frequency of m6A regulators across 33 cancer types. Table S4. The CNV deletion frequency of m6A regulators across 33 cancer types. Table S5. The correlation of m6A regulations and cancer pathways. Table S6. Literature curation of the function for m6A regulators. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.7581041
title: Additional file 6: of Constructing network topologies for multiple signal-encoding functions

description: The SBML format model for the network N5 in Fig. 4c. (XML 9 kb)
DOI: 10.6084/m9.figshare.7581041.v1
title: Additional file 6: of Constructing network topologies for multiple signal-encoding functions

description: The SBML format model for the network N5 in Fig. 4c. (XML 9 kb)
DOI: 10.48567/91jv-fx55
title: Antarctic synoptic weather charts, 2009-2010.
DOI: 10.17037/data.00003377
title: The Learning Together intervention: study data from three surveys in the INCLUSIVE cluster randomised controlled trial

description: Survey data from the INCLUSIVE study, a cluster-randomised controlled trial to test the Learning Together intervention to reduce bullying and aggression in English secondary schools. Components of the Learning Together intervention included staff training in restorative practice, facilitated school action groups, and a student social and emotional skills curriculum.

Primary outcomes, measured at 36 months, were: self-reported experience of bullying victimisation measured using the Gatehouse Bullying Scale (GBS) and perpetration of aggression measured using the Edinburgh Study of Youth Transitions and Crime (ESYTC) school misbehaviour subscale.

Secondary outcomes were: GBS and ESYTC scores at 24 months; quality of life measured with the Paediatric Quality of Life Inventory, wellbeing measured with the validated Short Warwick-Edinburgh Mental Well-Being Scale, psychological problems measured with the Strengths and Difficulties Questionnaire, bullying perpetration measured with the Modified Aggression Scale bullying subscale, substance use assessed using validated age-appropriate questions about cigarette smoking, alcohol use, and illicit drug use taken from national surveys, sexual risk behaviour (age of sexual debut and use of contraception at first sex), use of NHS health services (self-reported use of primary care, accident and emergency, or other service in the past 12 months), and contact with police (self-report of being stopped, reprimanded, or picked up by the police in the past 12 months), all measured at 36 months.

The trial is registered with ISRCTN (ISRCTN10751359).
DOI: 10.6084/m9.figshare.25267420
title: Raw data

description: Clinical data and bile acids raw data file presents clinical data information and raw data from bile acid tests for 200 participantsGut microbiota Raw Data file displays raw data from gut microbiota sequencing results
DOI: 10.5281/zenodo.10665344
title: Dataset for Master Thesis: 'Modelling of climate neutral energy systems based on sufficiency measures for Germany'

description: This zenodo archive contains data and code that was used to conduct the master thesis.

Overview:



Code



Demand Data Matching



Scripts that were used to match the demand data from the Pathway Explorer data Format the the format that is needed as input by PyPSA EUR

demand_data_matching.zip



Result analysis



Scripts that were used to extract the result data from the PyPSA EUR [1] network result files

result_analysis_code.zip





 Data



Demand Input Data



Data that was generated with the Pathway Explorer by CLIMACT [2]

Files:



pwe_files.zip





Result data



Output Files from the PyPSA EUR Model including the model config files

Files: 



mainResults+network_Sensitivity.zip

CC_sensitivity.zip

CarbonSeq+fossil_Sensitivity.zip





Postprocessing Output Data



data files that were generated by the scripts in result_analysis_code

Files:



post_processing_data_output.zip








Licensing

The code that was written in this thesis is published under the MIT License, see file license.txt

All PyPSA EUR datasets are licensed under CC-BY-4.0,  see also [3]

CLIMACT's Pathway Explorer is licensed under CC-BY-NC-SA, see also [4]

 

 

 

References:

[1] Brown, T., Victoria, M., Zeyen, E., Hofmann, F., Neumann, F., Frysztacki, M., Hampp, J., Schlachtberger, D., & Hörsch, J. PyPSA-Eur: An open sector-coupled optimisation model of the European energy system (Version 0.9.0) [Computer software]

[2] https://pathwaysexplorer.climact.com/model-resources

[3] https://pypsa-eur.readthedocs.io/en/latest/licenses.html

[4] https://pathwaysexplorer.climact.com/legal
DOI: 10.5281/zenodo.10665345
title: Dataset for Master Thesis: 'Modelling of climate neutral energy systems based on sufficiency measures for Germany'

description: This zenodo archive contains data and code that was used to conduct the master thesis.

Overview:



Code



Demand Data Matching



Scripts that were used to match the demand data from the Pathway Explorer data Format the the format that is needed as input by PyPSA EUR

demand_data_matching.zip



Result analysis



Scripts that were used to extract the result data from the PyPSA EUR [1] network result files

result_analysis_code.zip





 Data



Demand Input Data



Data that was generated with the Pathway Explorer by CLIMACT [2]

Files:



pwe_files.zip





Result data



Output Files from the PyPSA EUR Model including the model config files

Files: 



mainResults+network_Sensitivity.zip

CC_sensitivity.zip

CarbonSeq+fossil_Sensitivity.zip








Licensing

The code that was written in this thesis is published under the MIT License, see file license.txt

All PyPSA EUR datasets are licensed under CC-BY-4.0,  see also [3]

CLIMACT's Pathway Explorer is licensed under CC-BY-NC-SA, see also [4]

 

 

 

References:

[1] Brown, T., Victoria, M., Zeyen, E., Hofmann, F., Neumann, F., Frysztacki, M., Hampp, J., Schlachtberger, D., & Hörsch, J. PyPSA-Eur: An open sector-coupled optimisation model of the European energy system (Version 0.9.0) [Computer software]

[2] https://pathwaysexplorer.climact.com/model-resources

[3] https://pypsa-eur.readthedocs.io/en/latest/licenses.html

[4] https://pathwaysexplorer.climact.com/legal
DOI: 10.5281/zenodo.10694527
title: Dataset for Master Thesis: 'Modelling of climate neutral energy systems based on sufficiency measures for Germany'

description: This zenodo archive contains data and code that was used to conduct the master thesis.

Overview:



Code



Demand Data Matching



Scripts that were used to match the demand data from the Pathway Explorer data Format the the format that is needed as input by PyPSA EUR

demand_data_matching.zip



Result analysis



Scripts that were used to extract the result data from the PyPSA EUR [1] network result files

result_analysis_code.zip





 Data



Demand Input Data



Data that was generated with the Pathway Explorer by CLIMACT [2]

Files:



pwe_files.zip





Result data



Output Files from the PyPSA EUR Model including the model config files

Files: 



mainResults+network_Sensitivity.zip

CC_sensitivity.zip

CarbonSeq+fossil_Sensitivity.zip





Postprocessing Output Data



data files that were generated by the scripts in result_analysis_code

Files:



post_processing_data_output.zip








Licensing

The code that was written in this thesis is published under the MIT License, see file license.txt

All PyPSA EUR datasets are licensed under CC-BY-4.0,  see also [3]

CLIMACT's Pathway Explorer is licensed under CC-BY-NC-SA, see also [4]

 

 

 

References:

[1] Brown, T., Victoria, M., Zeyen, E., Hofmann, F., Neumann, F., Frysztacki, M., Hampp, J., Schlachtberger, D., & Hörsch, J. PyPSA-Eur: An open sector-coupled optimisation model of the European energy system (Version 0.9.0) [Computer software]

[2] https://pathwaysexplorer.climact.com/model-resources

[3] https://pypsa-eur.readthedocs.io/en/latest/licenses.html

[4] https://pathwaysexplorer.climact.com/legal
DOI: 10.48567/1pvy-vk59
title: USAP Antarctic Field Camp Observations, 1999-present (ongoing).
DOI: 10.25387/g3.6853244
title: Supplemental Material for Huang et al., 2018

description: Supplementary tables contain genotype and phenotype of Oryza accessions included in the study, and genomic regions sequenced by target capture. Figure S1 contains phylogeny tree based on SNPs.<br><br>A series of in-house Perl scripts to convert the polymorphisms from variant call format (VCF) to FASTA format; estimate of nucleotide diversity including Nei’s average pairwise nucleotide diversity (π) and Watterson’s estimator of theta (θw)<br>Fasta format files of gene fragments (~1500 base pair) upstream and downstream of the five candidate genes. These fragments were captured following the Agilent (Agilent, Santa Clara, CA) SureSelect Target Enrichment method (Gnirke et al., 2009). A total of 123 loci close to the five candidate genes were targeted and sequenced (Table S2)<br>
DOI: 10.25387/g3.6853244.v1
title: Supplemental Material for Huang et al., 2018

description: Supplementary tables contain genotype and phenotype of Oryza accessions included in the study, and genomic regions sequenced by target capture. Figure S1 contains phylogeny tree based on SNPs.<br><br>A series of in-house Perl scripts to convert the polymorphisms from variant call format (VCF) to FASTA format; estimate of nucleotide diversity including Nei’s average pairwise nucleotide diversity (π) and Watterson’s estimator of theta (θw)<br>Fasta format files of gene fragments (~1500 base pair) upstream and downstream of the five candidate genes. These fragments were captured following the Agilent (Agilent, Santa Clara, CA) SureSelect Target Enrichment method (Gnirke et al., 2009). A total of 123 loci close to the five candidate genes were targeted and sequenced (Table S2)<br>
DOI: 10.5281/zenodo.6453064
title: VOSOME

description: The dataset contains features and labels of 1000 audios from real social media conversations. The platform used was WhatsApp and they are Spanish speakers.



	
Labels_using_audios: File with the labelling of 5 expert based on audio.
	
Labels_using_text: File with the labelling of 3 expert based on text (audio manual transcription).
	
Speech_features: Features obtained without applying any filter. The features are the eGeMAPSv02 set of opensmile.
	
Speech2text: Transcription of the audios. It includes a manual transcription, and automatic transcription using amazon and google API.
	
User_questionnaire: Metadata of the subjects.
DOI: 10.6084/m9.figshare.15081831
title: Emerging highly pathogenic avian influenza (H5N8) virus in migratory birds in Central China, 2020

description: Eleven highly pathogenic avian influenza H5N8 viruses (clade 2.3.4.4b) were detected in migratory birds in Central China between November and December 2020, which were highly homologous to strains isolated in Europe from October to December 2020. Phylogenetic analysis indicated that the strains in the study possibly spread from Siberia by migratory birds. In this study, we found H5N8 virus infection in migratory birds could cause severe pathological damage and high viral load in multiple organs.
DOI: 10.6084/m9.figshare.15081831.v1
title: Emerging highly pathogenic avian influenza (H5N8) virus in migratory birds in Central China, 2020

description: Eleven highly pathogenic avian influenza H5N8 viruses (clade 2.3.4.4b) were detected in migratory birds in Central China between November and December 2020, which were highly homologous to strains isolated in Europe from October to December 2020. Phylogenetic analysis indicated that the strains in the study possibly spread from Siberia by migratory birds. In this study, we found H5N8 virus infection in migratory birds could cause severe pathological damage and high viral load in multiple organs.
DOI: 10.6084/m9.figshare.15081894
title: Structural evolution of the Kanggur tectonic belt: implications for the latest carboniferous to Permian orogeny in the Eastern Tianshan, NW China

description: The E-W Kanggur tectonic belt, a major tectonic belt in the Eastern Tianshan (ETS) of the Central Asian Orogenic Belt (CAOB), records the amalgamation history between the ETS and the Tarim Craton. Two generations of structural deformation (D1 and D2) are recognized by field observations in the Jingerquan, Huangshan-Jingxia, Yamansu North Mountain, and Nanbeidagou-Kanggurtag areas. Early deformation is exhibited by vertical ‘A’ type (asymmetrical and symmetrical) S0 folds, lenticular symmetrical boudins, S-C fabric, and nearly vertical S1 foliation, demonstrating an ~N-S compressional setting. Late deformation is characterized by ~E-W-trending dextral shearing and local S1 folding. Transpressional deformation explains the kinematic compatibility of these fold and shear structures. The new U-Pb zircon and Ar/Ar age data in this study provide constraints on the timing of deformation, suggesting that D1 occurred in the late Carboniferous-early Permian (300–286 Ma) and that dextral shearing (D2) likely occurred in the middle-late Permian (262–233 Ma). The ~N-S contraction was driven by orogenic thickening during the convergence of the North Tianshan (NTS) island arc system, the Central Tianshan (CTS), and the Tarim Craton. Dextral transpression is related to the oblique convergence between the Eastern Tianshan (ETS) and Tarim Craton. On a larger scale, dextral kinematics along the Main Tianshan Shear Zone in the Eastern and Western Tianshan, together with sinistral shearing in northeastern Kazakhstan and the Chinese Altai, accommodated the eastward escape of central orogenic materials, which were possibly affected by the convergence of the Siberian, Baltic, and Tarim Cratons.
DOI: 10.6084/m9.figshare.15081894.v1
title: Structural evolution of the Kanggur tectonic belt: implications for the latest carboniferous to Permian orogeny in the Eastern Tianshan, NW China

description: The E-W Kanggur tectonic belt, a major tectonic belt in the Eastern Tianshan (ETS) of the Central Asian Orogenic Belt (CAOB), records the amalgamation history between the ETS and the Tarim Craton. Two generations of structural deformation (D1 and D2) are recognized by field observations in the Jingerquan, Huangshan-Jingxia, Yamansu North Mountain, and Nanbeidagou-Kanggurtag areas. Early deformation is exhibited by vertical ‘A’ type (asymmetrical and symmetrical) S0 folds, lenticular symmetrical boudins, S-C fabric, and nearly vertical S1 foliation, demonstrating an ~N-S compressional setting. Late deformation is characterized by ~E-W-trending dextral shearing and local S1 folding. Transpressional deformation explains the kinematic compatibility of these fold and shear structures. The new U-Pb zircon and Ar/Ar age data in this study provide constraints on the timing of deformation, suggesting that D1 occurred in the late Carboniferous-early Permian (300–286 Ma) and that dextral shearing (D2) likely occurred in the middle-late Permian (262–233 Ma). The ~N-S contraction was driven by orogenic thickening during the convergence of the North Tianshan (NTS) island arc system, the Central Tianshan (CTS), and the Tarim Craton. Dextral transpression is related to the oblique convergence between the Eastern Tianshan (ETS) and Tarim Craton. On a larger scale, dextral kinematics along the Main Tianshan Shear Zone in the Eastern and Western Tianshan, together with sinistral shearing in northeastern Kazakhstan and the Chinese Altai, accommodated the eastward escape of central orogenic materials, which were possibly affected by the convergence of the Siberian, Baltic, and Tarim Cratons.
DOI: 10.6084/m9.figshare.11936373
title: LPO data and delay time calculation of amphibolites from Eastern Himalaya

description: LPO data of amphibolites from southern Tibet;Data of delay time vs. thickness for Tibetan amphibolites, experimental granulites and natural eclogites.<br>
DOI: 10.6084/m9.figshare.20324764.v1
title: Additional file 2 of The small GTPase BcSec4 is involved in conidiophore development, membrane integrity, and autophagy in Botrytis cinerea

description: Additional file 2. Table S1. Conidiation-associated genes in B. cinerea
DOI: 10.5281/zenodo.10694589
title: "The speed of sight: individual variation in critical flicker fusion thresholds" Raw data and analysis

description: Raw data files and R analysis script for the study "The speed of sight: individual variation in critical flicker fusion thresholds"
DOI: 10.5281/zenodo.10694588
title: "The speed of sight: individual variation in critical flicker fusion thresholds" Raw data and analysis

description: Raw data files and R analysis script for the study "The speed of sight: individual variation in critical flicker fusion thresholds"
DOI: 10.15156/bio/sh2798801.08fu
title: SH2798801.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh530657.07fu
title: SH530657.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh530658.07fu
title: SH530658.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.