cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.y49ybm
title: Occurrence Download

description: A dataset containing 1282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dovyalis caffra (Hook.fil. & Harv.) Warb.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1282 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001265-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w36nzr
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "TaxonKey is Glaucomys volans (Linnaeus, 1758)"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127164-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpz89j
title: Occurrence Download

description: A dataset containing 9388 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odontadenia Benth."
 ]
}

 The dataset includes 9388 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0200544-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwkgnz
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material citation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Agave filifera Salm-Dyck"
 ]
}

 The dataset includes 171 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014728-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xk99q5
title: Occurrence Download

description: A dataset containing 1191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sarocladium W.Gams & D.Hawksw."
 ]
}

 The dataset includes 1191 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0434571-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qsqpz
title: Occurrence Download

description: A dataset containing 13086499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((69.000 83.000, -31.000 83.000, -31.000 57.000, 69.000 57.000, 69.000 83.000))",
 "Year 2000-2004"
 ]
}

 The dataset includes 13086499 records from 1048 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019044-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3qf48
title: Occurrence Download

description: A dataset containing 237 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Continent derived from coordinates, Occurrence status inferred from individual count)",
 "TaxonKey is Anolis wattsii"
 ]
}

 The dataset includes 237 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059985-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30918881
title: Supplementary Material for: Soyasaponin Aa prevents obesity-related precocious puberty by inhibiting hypothalamic-pituitary-gonadal axis in female Sprague-Dawley rats

description: Objective: Early-onset puberty is a major reason for pediatric endocrinology clinics, particularly among girls. Obesity is linked to disruptions in the hypothalamic-pituitary-gonadal (HPG) axis, thereby leading to early-onset puberty. This study was designed to investigate the regulatory effects of soyasaponin Aa in an animal model of obesity-associated precocious puberty.
Study design: A rat model of obesity-induced precocious puberty was established through high-fat diet (HFD) feeding, which closely mimics the condition in children caused by excessive caloric intake. Obesity was assessed through body weight, serum lipid levels, and gonadal fat mass. Western blotting was performed to assess key adipogenesis regulators (PPARγ and C/EBPα) in gonadal white adipose tissues. ELISA was used to analyze serum levels of hormones (LH, FSH, and GnRH). The mRNA expression of HPG axis-related genes in the hypothalamus, pituitary gland, and ovary were detected by RT-qPCR. Histopathological changes in ovarian and uterine tissues were examined using hematoxylin and eosin staining.
Results: Soyasaponin Aa significantly reduced body weight gain in HFD-fed rats and suppressed increases in serum lipid levels and gonadal white adipose tissue mass. It inhibited HFD-induced lipogenesis, as indicated by reduced expression of PPARγ and C/EBPα. Soyasaponin Aa effectively delayed puberty onset in female rats, as evidenced by prolonged vaginal opening and first estrous cycle, reduced endometrium thickness, and lower uterine and ovarian weights, along with suppressed follicular maturation. The HFD group showed elevated serum LH and FSH levels and increased hypothalamic GnRH secretion, all of which were significantly counteracted by soyasaponin Aa. Moreover, soyasaponin Aa downregulated HPG axis-related gene expression.
Conclusion: Soyasaponin Aa protects against obesity-induced precocious puberty by suppressing the activation of HPG axis.
DOI: 10.6084/m9.figshare.30918881.v1
title: Supplementary Material for: Soyasaponin Aa prevents obesity-related precocious puberty by inhibiting hypothalamic-pituitary-gonadal axis in female Sprague-Dawley rats

description: Objective: Early-onset puberty is a major reason for pediatric endocrinology clinics, particularly among girls. Obesity is linked to disruptions in the hypothalamic-pituitary-gonadal (HPG) axis, thereby leading to early-onset puberty. This study was designed to investigate the regulatory effects of soyasaponin Aa in an animal model of obesity-associated precocious puberty.
Study design: A rat model of obesity-induced precocious puberty was established through high-fat diet (HFD) feeding, which closely mimics the condition in children caused by excessive caloric intake. Obesity was assessed through body weight, serum lipid levels, and gonadal fat mass. Western blotting was performed to assess key adipogenesis regulators (PPARγ and C/EBPα) in gonadal white adipose tissues. ELISA was used to analyze serum levels of hormones (LH, FSH, and GnRH). The mRNA expression of HPG axis-related genes in the hypothalamus, pituitary gland, and ovary were detected by RT-qPCR. Histopathological changes in ovarian and uterine tissues were examined using hematoxylin and eosin staining.
Results: Soyasaponin Aa significantly reduced body weight gain in HFD-fed rats and suppressed increases in serum lipid levels and gonadal white adipose tissue mass. It inhibited HFD-induced lipogenesis, as indicated by reduced expression of PPARγ and C/EBPα. Soyasaponin Aa effectively delayed puberty onset in female rats, as evidenced by prolonged vaginal opening and first estrous cycle, reduced endometrium thickness, and lower uterine and ovarian weights, along with suppressed follicular maturation. The HFD group showed elevated serum LH and FSH levels and increased hypothalamic GnRH secretion, all of which were significantly counteracted by soyasaponin Aa. Moreover, soyasaponin Aa downregulated HPG axis-related gene expression.
Conclusion: Soyasaponin Aa protects against obesity-induced precocious puberty by suppressing the activation of HPG axis.
DOI: 10.6084/m9.figshare.30918884
title: Supplementary Material for: A genetic atlas of rheumatoid arthritis integrating immune traits and plasma proteins identifies genetically-supported candidate effectors along the coagulation-inflammation axis

description: Background: The upstream immunological drivers of rheumatoid arthritis (RA) and their downstream proteomic effectors remain incompletely characterized. We employed an integrated genetic approach to identify causal immune and protein biomarkers for RA.
Methods: We performed a two-phase Mendelian randomization (MR) study. In Phase 1, we assessed the causal effects of 731 immune cell phenotypes on RA risk using two-sample MR with strict instrument validity criteria and multiple testing control. Phase 2 integrated cis-protein quantitative trait loci (pQTLs) from a large-scale proteomic GWAS (4,907 proteins) with RA through MR and Bayesian colocalization. Replication was conducted in the UK Biobank, followed by reverse MR and computational druggability assessment (DGIdb, molecular docking, dynamics simulations).
Results: Phase 1 MR identified 35 immune traits significantly associated with RA after false discovery rate (FDR) correction, including risk-associated myeloid dendritic cells and protective CD39⁺CD4⁺ T cells. Phase 2 revealed nine plasma proteins genetically associated with RA risk after Bonferroni correction, including F2 (prothrombin), thrombin, GP100, and sRAGE (AGER). Colocalization analysis supported shared genetic signals for GP100 and thrombin/prothrombin. Replication partially validated sRAGE, SCGN, and GP100. Reverse MR suggested minimal reverse causality. Docking and molecular dynamics suggested plausible binding of bortezomib (BTZ) and thrombin (binding energy: −5.53 kcal·mol⁻¹). 
Conclusions: Our genetics-anchored proteomic screen nominates a coagulation–inflammation axis—notably F2—as a therapeutic avenue in RA. Findings are hypothesis-generating and warrant mechanistic and preclinical validation, including safety profiling of anticoagulation-adjacent strategies.
DOI: 10.6084/m9.figshare.30918884.v1
title: Supplementary Material for: A genetic atlas of rheumatoid arthritis integrating immune traits and plasma proteins identifies genetically-supported candidate effectors along the coagulation-inflammation axis

description: Background: The upstream immunological drivers of rheumatoid arthritis (RA) and their downstream proteomic effectors remain incompletely characterized. We employed an integrated genetic approach to identify causal immune and protein biomarkers for RA.
Methods: We performed a two-phase Mendelian randomization (MR) study. In Phase 1, we assessed the causal effects of 731 immune cell phenotypes on RA risk using two-sample MR with strict instrument validity criteria and multiple testing control. Phase 2 integrated cis-protein quantitative trait loci (pQTLs) from a large-scale proteomic GWAS (4,907 proteins) with RA through MR and Bayesian colocalization. Replication was conducted in the UK Biobank, followed by reverse MR and computational druggability assessment (DGIdb, molecular docking, dynamics simulations).
Results: Phase 1 MR identified 35 immune traits significantly associated with RA after false discovery rate (FDR) correction, including risk-associated myeloid dendritic cells and protective CD39⁺CD4⁺ T cells. Phase 2 revealed nine plasma proteins genetically associated with RA risk after Bonferroni correction, including F2 (prothrombin), thrombin, GP100, and sRAGE (AGER). Colocalization analysis supported shared genetic signals for GP100 and thrombin/prothrombin. Replication partially validated sRAGE, SCGN, and GP100. Reverse MR suggested minimal reverse causality. Docking and molecular dynamics suggested plausible binding of bortezomib (BTZ) and thrombin (binding energy: −5.53 kcal·mol⁻¹). 
Conclusions: Our genetics-anchored proteomic screen nominates a coagulation–inflammation axis—notably F2—as a therapeutic avenue in RA. Findings are hypothesis-generating and warrant mechanistic and preclinical validation, including safety profiling of anticoagulation-adjacent strategies.
DOI: 10.6084/m9.figshare.30918887
title: Supplementary Material for: Histopathological Analysis of an Acquired Vitreous Cyst with Pigmented Epiretinal Membrane Following Vitrectomy: A Case Report

description: Introduction: In this study, we report a case of an acquired fixed vitreous cyst associated with a pigmented epiretinal membrane (ERM) that developed approximately 10 years after vitrectomy for vitreous hemorrhage (VH) secondary to branch retinal vein occlusion (BRVO). Case Presentation: In this study involved an 85-year-old male who had previously undergone a vitrectomy in November 2014 for a VH caused by BRVO. The patient's postoperative recovery was favorable, however, at a follow-up visit in January 2023 a pigmented ERM was observed, along with an adjacent cyst approximately one-third optic-disc diameter. Initially, the lesion presented as cystoid macular edema (CME) with multiple cystoid spaces, one of which that had gradually enlarged and eventually formed into a pigmented vitreous cyst of approximately two optic-disc diameters in size by January 2025. The cyst was surgically excised, and histological analysis revealed that the cyst wall demonstrated a bilayered structure; i.e., the outer layer consisting of retinal pigment epithelial (RPE), while the inner layer being composed of glial lineage cells. Conclusion: Based on our findings, we hypothesize that the wall of a cystoid space in CME formed a protrusion from the retina into the vitreous cavity, which subsequently developed into a vitreous cyst through migration and proliferation of reactive Müller cells and RPE cells due to structural compromise of the retina.
DOI: 10.6084/m9.figshare.30918887.v1
title: Supplementary Material for: Histopathological Analysis of an Acquired Vitreous Cyst with Pigmented Epiretinal Membrane Following Vitrectomy: A Case Report

description: Introduction: In this study, we report a case of an acquired fixed vitreous cyst associated with a pigmented epiretinal membrane (ERM) that developed approximately 10 years after vitrectomy for vitreous hemorrhage (VH) secondary to branch retinal vein occlusion (BRVO). Case Presentation: In this study involved an 85-year-old male who had previously undergone a vitrectomy in November 2014 for a VH caused by BRVO. The patient's postoperative recovery was favorable, however, at a follow-up visit in January 2023 a pigmented ERM was observed, along with an adjacent cyst approximately one-third optic-disc diameter. Initially, the lesion presented as cystoid macular edema (CME) with multiple cystoid spaces, one of which that had gradually enlarged and eventually formed into a pigmented vitreous cyst of approximately two optic-disc diameters in size by January 2025. The cyst was surgically excised, and histological analysis revealed that the cyst wall demonstrated a bilayered structure; i.e., the outer layer consisting of retinal pigment epithelial (RPE), while the inner layer being composed of glial lineage cells. Conclusion: Based on our findings, we hypothesize that the wall of a cystoid space in CME formed a protrusion from the retina into the vitreous cavity, which subsequently developed into a vitreous cyst through migration and proliferation of reactive Müller cells and RPE cells due to structural compromise of the retina.
DOI: 10.6084/m9.figshare.30918893
title: Supplementary Material for: Multiple Onychomatricomas as a Rare Clinical Presentation with BAP1 mutation: A case report

description: Introduction: Onychomatricoma is a rare benign fibroepithelial tumor of nail that originated from nail matrix and nail bed. It presents as a soliter lesion and leads tothickening of nail plate, yellowish longitudinal bands, leukoxanthonchia, transverse overcurvature and splinter hemorrhages. 
Case Presentation: We report a 50-year- old woman with complaint of some changes in the shape and colour of her thumb nails. On her dermatologic examination, leukoxanthonchia extending from the distal nail to the lunula, irregularity on the lunula, and erythematous and whitish bands on the lunula were found on her both left and right thumb nail. Both lesions were treated by surgically. The histopathological evaluation of both lesions were consistent with OM. The BAP1 gene was reported as likely pathogenic.
Conclusion: Onychomatricoma commonly affects a single nail, the involvement of multiple nails should not be considered a reason to exclude the diagnosis of OM. Multi-nail dystrophies should be consider in case of presence of multiple lesions. In cases with multipl OM, evaluation for a BAP1 mutation should be considered.
DOI: 10.6084/m9.figshare.30918893.v1
title: Supplementary Material for: Multiple Onychomatricomas as a Rare Clinical Presentation with BAP1 mutation: A case report

description: Introduction: Onychomatricoma is a rare benign fibroepithelial tumor of nail that originated from nail matrix and nail bed. It presents as a soliter lesion and leads tothickening of nail plate, yellowish longitudinal bands, leukoxanthonchia, transverse overcurvature and splinter hemorrhages. 
Case Presentation: We report a 50-year- old woman with complaint of some changes in the shape and colour of her thumb nails. On her dermatologic examination, leukoxanthonchia extending from the distal nail to the lunula, irregularity on the lunula, and erythematous and whitish bands on the lunula were found on her both left and right thumb nail. Both lesions were treated by surgically. The histopathological evaluation of both lesions were consistent with OM. The BAP1 gene was reported as likely pathogenic.
Conclusion: Onychomatricoma commonly affects a single nail, the involvement of multiple nails should not be considered a reason to exclude the diagnosis of OM. Multi-nail dystrophies should be consider in case of presence of multiple lesions. In cases with multipl OM, evaluation for a BAP1 mutation should be considered.
DOI: 10.15468/dl.3vmjn7
title: Occurrence Download

description: A dataset containing 13798 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus chrysolepis"
 ]
}

 The dataset includes 13798 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059986-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uta2k
title: Occurrence Download

description: A dataset containing 2375 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 75.0",
 "DecimalLatitude is less than or equal to 80.0",
 "DecimalLongitude is greater than or equal to -85.0",
 "DecimalLongitude is less than or equal to -80.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2375 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059987-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zc6n6t
title: Occurrence Download

description: A dataset containing 3555 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Geodetic datum assumed WGS84, Continent derived from coordinates, Occurrence status inferred from individual count, Coordinate rounded)",
 "TaxonKey is Boa constrictor"
 ]
}

 The dataset includes 3555 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059989-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14220862
title: e-IPO Indonesia Data - Investment
DOI: 10.15468/dl.v2x9tt
title: Occurrence Download

description: A dataset containing 253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 80.0",
 "DecimalLatitude is less than or equal to 83.639083",
 "DecimalLongitude is greater than or equal to -85.0",
 "DecimalLongitude is less than or equal to -80.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 253 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059990-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqlbua
title: Occurrence Download

description: A dataset containing 14069 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 {
 "or" : [
 "Continent is Africa",
 "Continent is Asia",
 "Continent is Oceania",
 "Continent is North America",
 "Continent is Europe",
 "Continent is South America"
 ]
 },
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Country derived from coordinates"
 ]
 },
 "TaxonKey is Siphonaptera"
 ]
}

 The dataset includes 14069 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001980-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usdj47
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Country is Indonesia",
 "GadmGid is one of (IDN.30_1, IDN.31_1, IDN.32_1, IDN.1_1, IDN.16_1, IDN.24_1, IDN.5_1, IDN.3_1, IDN.17_1, IDN.8_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Macaca fascicularis (Raffles, 1821)"
 ]
}

 The dataset includes 147 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056608-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsrof1
title: Occurrence Download

description: A dataset containing 1276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nesoselandria Rohwer, 1910"
 ]
}

 The dataset includes 1276 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032812-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2fp92
title: Occurrence Download

description: A dataset containing 7505 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Trogon Brisson, 1760"
 ]
}

 The dataset includes 7505 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190561-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.