cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.929464
title: Seawater carbonate chemistry and half-time of calcein influx in the coral Stylophora pistillata

description: Coral calcification relies on the transport of ions and molecules to the extracellular calcifying medium (ECM). Little is known about paracellular transport (via intercellular junctions) in corals and other marine calcifiers. Here, we investigated whether the permeability of the paracellular pathway varied in different environmental conditions in the coral Stylophora pistillata. Using the fluorescent dye calcein, we characterised the dynamics of calcein influx from seawater to the ECM and showed that increases in paracellular permeability (leakiness) induced by hyperosmotic treatment could be detected by changes in calcein influx rates. We then used the calcein-imaging approach to investigate the effects of two environmental stressors on paracellular permeability: seawater acidification and temperature change. Under conditions of seawater acidification (pH 7.2) known to depress pH in the ECM and the calcifying cells of S. pistillata, we observed a decrease in half-times of calcein influx, indicating increased paracellular permeability. By contrast, high temperature (31°C) had no effect, whereas low temperature (20°C) caused decreases in paracellular permeability. Overall, our study establishes an approach to conduct further in vivo investigation of paracellular transport and suggests that changes in paracellular permeability could form an uncharacterised aspect of the physiological response of S. pistillata to seawater acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-15.
DOI: 10.1594/pangaea.763348
title: Seawater carbonate chemistry and community calcification near Lizar Island, 2011

description: It is predicted that surface ocean pH will reach 7.9, possibly 7.8 by the end of this century due to increased carbon dioxide (CO2) in the atmosphere and in the surface ocean. While aragonite-rich sediments don't begin to dissolve until a threshold pH of ~ 7.8 is reached, dissolution from high-Mg calcites is evident with any drop in pH. Indeed, it is high-Mg calcite that dominates the reaction of carbonate sediments with increased CO2, which undergoes a rapid neomorphism process to a more stable, low-Mg calcite. This has major implications for the future of the high-Mg calcite producing organisms within coral reef ecosystems. In order to understand any potential buffering system offered by the dissolution of carbonate sediments under a lower oceanic pH, this process of high-Mg calcite dissolution in the reef environment must be further elucidated.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
description: Supplement to: Tynan, Sarah; Opdyke, Bradley N (2011): Effects of lower surface ocean pH upon the stability of shallow water carbonate sediments. Science of the Total Environment, 409(6), 1082-1086
DOI: 10.1594/pangaea.833116
title: (Table 3) δ¹⁸O, B/Ca and Mg/Ca ratios in Globorotalia inflata from sediment core CHAT_16k

description: AGE after I.N. Mc Cave, personal communication, 2006.
DOI: 10.1594/pangaea.839059
title: Vertical profiles of environmental parameters measured on discrete water samples collected with Niskin bottles at station TARA_068 during the Tara Oceans expedition 2009-2013

description: The Tara Oceans Expedition (2009-2013) was a global survey of ocean ecosystems aboard the Sailing Vessel Tara. It carried out extensive measurements of evironmental conditions and collected plankton (viruses, bacteria, protists and metazoans) for later analysis using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set includes properties of seawater, particulate matter and dissolved matter that were measured from discrete water samples collected with Niskin bottles during the 2009-2013 Tara Oceans expedition. Properties include pigment concentrations from HPLC analysis (10 depths per vertical profile, 25 pigments per depth), the carbonate system (Surface and 400m; pH (total scale), CO2, pCO2, fCO2, HCO3, CO3, Total alkalinity, Total carbon, OmegaAragonite, OmegaCalcite, and dosage Flags), nutrients (10 depths per vertical profile; NO2, PO4, N02/NO3, SI, quality Flags), DOC, CDOM, and dissolved oxygen isotopes. The Service National d'Analyse des Paramètres Océaniques du CO2, at the Université Pierre et Marie Curie, determined CT and AT potentiometrically. More than 200 vertical profiles of these properties were made across the world ocean. DOC, CDOM and dissolved oxygen isotopes are available only for the Arctic Ocean and Arctic Seas (2013).
description: marc.picheral@obs-vlfr.fr&gt;2014-10-03T13:23:32&gt;D:\process_ctd_data\Tara_validated_CTD_data_20121011\Tara_Oceans_Data_RVSS-NISKIN_2009-2013_20141003&gt;
DOI: 10.1594/pangaea.854959
title: (Table S1) Bottom water temperature, salinity and carbonate system parameters at CO2 vents in the Columbretes Islands Marine Reserve
DOI: 10.1594/pangaea.860508
title: Assessing the physiological responses of the gastropod Crepidula fornicata to predicted ocean acidification and warming

description: Organisms inhabiting coastal waters naturally experience diel and seasonal physico-chemical variations. According to various assumptions, coastal species are either considered to be highly tolerant to environmental changes or, conversely, living at the thresholds of their physiological performance. Therefore, these species are either more resistant or more sensitive, respectively, to ocean acidification and warming. Here, we focused on Crepidula fornicata, an invasive gastropod that colonized bays and estuaries on northwestern European coasts during the 20th century. Small (&lt;3 cm in length) and large (&gt;4.5 cm in length), sexually mature individuals of C. fornicata were raised for 6 months in three different pCO2 conditions (390 µatm, 750 µatm, and 1400 µatm) at four successive temperature levels (10°C, 13°C, 16°C, and 19°C). At each temperature level and in each pCO2 condition, we assessed the physiological rates of respiration, ammonia excretion, filtration and calcification on small and large individuals. Results show that, in general, temperature positively influenced respiration, excretion and filtration rates in both small and large individuals. Conversely, increasing pCO2 negatively affected calcification rates, leading to net dissolution in the most drastic pCO2 condition (1400 µatm) but did not affect the other physiological rates. Overall, our results indicate that C. fornicata can tolerate ocean acidification, particularly in the intermediate pCO2 scenario. Moreover, in this eurythermal species, moderate warming may play a buffering role in the future responses of organisms to ocean acidification.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-05-16.
description: Supplement to: Noisette, Fanny; Bordeyne, Francois; Davoult, Dominique; Martin, Sophie (2016): Assessing the physiological responses of the gastropod Crepidula fornicata to predicted ocean acidification and warming. Limnology and Oceanography, 61(2), 430-444
DOI: 10.1594/pangaea.893703
title: Seawater carbonate chemistry and behavioural abnormalities in coral reef fish

description: Elevated CO2 levels associated with ocean acidification (OA) have been shown to alter behavioural responses in coral reef fishes. However, all studies to date have used stable pCO2 treatments, not considering the substantial diel pCO2 variation that occurs in shallow reef habitats. Here, we reared juvenile damselfish, Acanthochromis polyacanthus, and clownfish, Amphiprion percula, at stable and diel cycling pCO2 treatments in two experiments. As expected, absolute lateralization of A. polyacanthus and response to predator cue of Am. percula were negatively affected in fish reared at stable, elevated pCO2 in both experiments. However, diel pCO2 fluctuations reduced the negative effects of OA on behaviour. Importantly, in experiment two, behavioural abnormalities that were present in fish reared at stable 750 µatm CO2 were largely absent in fish reared at 750 ± 300 µatm CO2. Overall, we show that diel pCO2 cycles can substantially reduce the severity of behavioural abnormalities caused by elevated CO2. Thus, past studies may have over-estimated the impacts of OA on the behavioural performance of coral reef fishes. Furthermore, our results suggest that diel pCO2 cycles will delay the onset of behavioural abnormalities in natural populations.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-09-04.
description: Supplement to: Jarrold, Michael; Humphrey, Craig; McCormick, Mark I; Munday, Philip L (2017): Diel CO2 cycles reduce severity of behavioural abnormalities in coral reef fish under ocean acidification. Scientific Reports, 7(1)
DOI: 10.1594/pangaea.919526
title: Seawater carbonate chemistry and load at failure, thread extensibility, and total thread counts of the blue mussel (Mytilus edulis)

description: Blue mussel (Mytilus edulis) produce byssal threads to anchor themselves to the substrate. These threads are always exposed to the surrounding environmental conditions. Understanding how environmental pH affects these threads is crucial in understanding how climate change can affect mussels. This work examines three factors (load at failure, thread extensibility, and total thread counts) that indicate the performance of byssal threads as well as condition index to assess impacts on the physiological condition of mussels held in artificial seawater acidified by the addition of CO2. There was no significant variation between the control (786 μatm CO2 / 7.98 pH/ 2805 μmol/kg total alkalinity) and acidified (2555 μatm CO2 / 7.47 pH/ 2650 μmol/kg total alkalinity) treatment groups in any of these factors. The results of this study suggest that ocean acidification by CO2 addition has no significant effect on the quality and performance of threads produced by M. edulis.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-06-12.
DOI: 10.1594/pangaea.892654
title: Seawater carbonate chemistry and Antarctic macroalgal biochemical composition and amphipod grazer feeding preferences

description: Increased anthropogenic atmospheric CO2 concentrations have resulted in ocean warming and alterations in ocean carbonate chemistry, decreasing seawater pH (ocean acidification). The combination of ocean warming and acidification (OWA) may alter trophic interactions in marine benthic communities along the western Antarctic Peninsula (WAP). Abundant and diverse macroalgae–grazer assemblages, dominated by macroalgae (e.g. chemically defended Desmarestia anceps and D. menziesii) and gammarid amphipods (e.g. Gondogeneia antarctica), occur on the nearshore benthos along the WAP. In the present study, the amphipod G. antarctica and macroalgae D. anceps and D. menziesii were exposed for 39 and 79 d, respectively, to combinations of current and predicted near-future temperature (1.5 and 3.5°C, respectively) and pH (8.0 and 7.6, respectively). Protein and lipid levels of macroalgal tissues were quantified, and 5-way choice amphipod feeding assays were performed with lyophilized macroalgal tissues collected at time zero and following exposure to the 4 temperature-pH treatments. For D. anceps, we found a significant interactive temperature-pH effect on lipid levels and significantly lower protein levels at reduced pH. In contrast, tissues of D. menziesii exhibited significantly greater lipid levels after exposure to reduced pH, but there was no temperature effect on lipid or protein levels. Despite shifts in macroalgal biochemical composition, there were no changes in amphipod feeding preferences. Our results indicate that despite altered macroalgal nutritional quality under OWA, both macroalgae retained their ability to deter amphipod feeding. This deterrent capacity could become an important contributor to net community resistance of macroalgae-mesograzer assemblages of the WAP to predicted OWA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-07-12.
description: Supplement to: Schram, Julie B; Schoenrock, Kathryn M; McClintock, James B; Amsler, Charles D; Angus, Robert A (2017): Ocean warming and acidification alter Antarctic macroalgal biochemical composition but not amphipod grazer feeding preferences. Marine Ecology Progress Series, 581, 45-56
DOI: 10.1594/pangaea.892594
title: Seawater carbonate chemistry and the net calcification and photosynthesis rate of coralline algae

description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-07-20.
DOI: 10.1594/pangaea.892827
title: Seawater carbonate chemistry and community structure of marine biofouling communities

description: Ocean acidification may have far-reaching consequences for marine community and ecosystem dynamics, but its full impacts remain poorly understood due to the difficulty of manipulating pCO2 at the ecosystem level to mimic realistic fluctuations that occur on a number of different timescales. It is especially unclear how quickly communities at various stages of development respond to intermediate-scale pCO2 change and, if high pCO2 is relieved mid-succession, whether past acidification effects persist, are reversed by alleviation of pCO2 stress, or are worsened by departures from prior high pCO2 conditions to which organisms had acclimatized. Here, we used reciprocal transplant experiments along a shallow water volcanic pCO2 gradient to assess the importance of the timing and duration of high pCO2 exposure (i.e. discrete events at different stages of successional development vs. continuous exposure) on patterns of colonization and succession in a benthic fouling community. We show that succession at the acidified site was initially delayed (less community change by eight weeks) but then caught up over the next four weeks. These changes in succession led to homogenization of communities maintained in or transplanted to acidified conditions, and altered community structure in ways that reflected both short- and longer-term acidification history. These community shifts are likely a result of interspecific variability in response to increased pCO2 and changes in species interactions. High pCO2 altered biofilm development, allowing serpulids to do best at the acidified site by the end of the experiment, although early (pre-transplant), negative effects of pCO2 on recruitment of these worms was still detectable. The ascidians Diplosoma sp. and Botryllus sp. settled later and were more tolerant to acidification. Overall, transient and persistent acidification-driven changes in the biofouling community, via both past and more recent exposure, could have important implications for ecosystem function and food web dynamics.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-08-06.
description: Supplement to: Brown, Norah E M; Milazzo, Marco; Rastrick, S P S; Hall-Spencer, Jason M; Therriault, Thomas W; Harley, Christopher D G (2018): Natural acidification changes the timing and rate of succession, alters community structure, and increases homogeneity in marine biofouling communities. Global Change Biology, 24(1), e112-e127
DOI: 10.1594/pangaea.833257
title: Effects of Ocean Acidification and Warming on Sperm Activity and Early Life Stages of the Mediterranean Mussel (Mytilus galloprovincialis)

description: Larval stages are among those most vulnerable to ocean acidification (OA). Projected atmospheric CO2 levels for the end of this century may lead to negative impacts on communities dominated by calcifying taxa with planktonic life stages. We exposed Mediterranean mussel (Mytilus galloprovincialis) sperm and early life stages to pHT levels of 8.0 (current pH) and 7.6 (2100 level) by manipulating pCO2 level (380 and 1000 ppm). Sperm activity was examined at ambient temperatures (16-17 °C) using individual males as replicates. We also assessed the effects of temperature (ambient and = 20 °C) and pH on larval size, survival, respiration and calcification of late trochophore/early D-veliger stages using a cross-factorial design. Increased pCO2 had a negative effect on the percentage of motile sperm (mean response ratio R= 71%) and sperm swimming speed (R= 74%), possibly indicating reduced fertilization capacity of sperm in low concentrations. Increased temperature had a more prominent effect on larval stages than pCO2, reducing performance (RSize = 90% and RSurvival = 70%) and increasing energy demand (RRespiration = 429%). We observed no significant interactions between pCO2 and temperature. Our results suggest that increasing temperature might have a larger impact on very early larval stages of M. galloprovincialis than OA at levels predicted for the end of the century.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-06-05.
description: Supplement to: Vihtakari, Mikko; Hendriks, Iris; Holding, Johnna; Renaud, Paul E; Duarte, Carlos Manuel; Havenhand, Jonathan N (2013): Effects of Ocean Acidification and Warming on Sperm Activity and Early Life Stages of the Mediterranean Mussel (Mytilus galloprovincialis). Water, 5(4), 1890-1915
DOI: 10.1594/pangaea.834309
title: CO2-induced ocean acidification increases anxiety in Rockfish via alteration of GABAA receptor functioning

description: The average surface pH of the ocean is dropping at a rapid rate due to the dissolution of anthropogenic CO2, raising concerns for marine life. Additionally, some coastal areas periodically experience upwelling of CO2-enriched water with reduced pH. Previous research has demonstrated ocean acidification (OA)-induced changes in behavioural and sensory systems including olfaction, which is due to altered function of neural gamma-aminobutyric acid type A (GABAA) receptors. Here, we used a camera-based tracking software system to examine whether OA-dependent changes in GABAA receptors affect anxiety in juvenile Californian rockfish (Sebastes diploproa). Anxiety was estimated using behavioural tests that measure light/dark preference (scototaxis) and proximity to an object. After one week in OA conditions projected for the next century in the California shore (1125 ± 100 µatm, pH 7.75), anxiety was significantly increased relative to controls (483 ± 40 µatm CO2, pH 8.1). The GABAA-receptor agonist muscimol, but not the antagonist gabazine, caused a significant increase in anxiety consistent with altered Cl- flux in OA-exposed fish. OA-exposed fish remained more anxious even after 7 days back in control seawater; however, they resumed their normal behaviour by day 12. These results show that OA could severely alter rockfish behaviour; however, this effect is reversible.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-25.
description: Supplement to: Hamilton, Trevor James; Holcombe, Adam; Tresguerres, Martin (2013): CO2-induced ocean acidification increases anxiety in Rockfish via alteration of GABAA receptor functioning. Proceedings of the Royal Society B-Biological Sciences, 281(1775), 20132509