cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/zfqm2u
title: The Coffee Genome Hub: a resource for coffee genomes

description: The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee. Data available are the complete genome sequence of C. canephora along with gene structure, gene product information, metabolism, gene families, transcriptomics (ESTs, RNA-Seq), genetic markers and genetic maps. The hub provides also tools for easy querying, visualizing and downloading research data. It is being built using the open-source Tripal database infrastructure. It is developed by IRD and Cirad and supported by the South Green Bioinformatics platform.
description: Database can be found here: http://coffee-genome.org
DOI: 10.7910/dvn/osxnzs
title: Symposium: Dyadic Research Designs: Progress or Postmortem?

description: [This is a post-publication review symposium] To what extent are international relations scholars constrained in their ability to answer important questions by what has become the workhorse unit of observation for analyzing relational data: the dyad? Skyler Cranmer and Bruce Desmarais argue that focusing on dyadic data has led scholarship to fail at properly characterizing relationships of interest in international relations data, while Paul Diehl and Thorin Wright (2016)and Paul Poast (2016) offer conditional defenses of using dyadic data. However, all three acknowledge that many of the problems identified in Cranmer and Desmarais (2016) carry with them both inferential and substantive merit. Journal space prevents a fuller exploration of this debate in the pages of International Studies Quarterly. Thus, to facilitate this important discussion, we invited eight scholars to weigh in on the question of dyadic data.
[...]
DOI: 10.7910/dvn/y1nall
title: 4. Summary data set for publication by Harvey et al. 2017

description: This is a summary data set that contains information on the characteristics of 300 smallholder coffee and basic grain farms and the prevalence and characteristics of Ecosystem-based Adaptation (EbA) practices on these farms. 

The data base '4_Summary_Database', was used as a basis for the following publication: Harvey, C.A., M.R. Martínez -Rodríguez, J. M. Cardenas, J. Avelino, B. Rapidel, C.I. Donatti, and Vílchez Mendoza. 2017. The use of Ecosystem-based Adaptation practices by smallholder farmers in Central America. Agriculture, Ecosystems and Environment 246, 279-290.

The accompanying glossary ‘4_Summary_Glossary’ provides a description of all variables in the data set. Sheet 1 is in Spanish, sheet 2 is in English.

The file "Metadata CASCADE WP4 datasets" gives detailed information on the project, methods, data sets and files included in the dataverse 'Characteristics and use of EbA practices by smallholder farmers in Central America'.
DOI: 10.7910/dvn/ycfwmy
title: A13_25983.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/82a0af44-fcae-47ea-bb7d-9fd0b0a5b08b'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/82a0af44-fcae-47ea-bb7d-9fd0b0a5b08b
DOI: 10.7910/dvn/zbgvyx
title: U.S. Military Aid and Recipient State Cooperation
DOI: 10.7910/dvn/ed73ho
title: Wright Casebook Edited; Docketed Case: 81-1029
DOI: 10.7910/dvn/zh4k0s
title: Replication Data for Detecting diverse perspectives: using text analytics to reveal sex differences in congressional debate about defense

description: These is script and file can be used to run the analysis presented in the main text, as well as all supplemental material.
DOI: 10.7910/dvn/gpc4di
title: Replication Data for Article "互联网使用提升了环保参与度吗"

description: Replication Data for: 互联网使用提升了环保参与度吗
DOI: 10.7910/dvn/jqaajl
title: Replication Data for: Out of Sight, Out of Mind? Electoral Responses to Proximity of Health Care

description: Do voters reward incumbents for the provision of public services? In this paper, we study the political economy of catchment areas of public services to answer this question. Rather than examining the binary relationship between health care provision and electoral returns within politically defined borders, we study whether increases in geographic accessibility of health care providers and decreases in congestion in services attract votes for the incumbent. Leveraging a health care reform in Turkey, which substantially impacted the geospatial distribution of public health clinics in Istanbul, we find that decreases in walking time and improvements in congestion levels in the closest clinic from a polling station significantly increase vote share of the AKP, the incumbent party, at that polling station. We also show that poorer communities were more responsive to improvements in spatial accessibility to the local clinics.
DOI: 10.7910/dvn/np9nzo
title: Replication data for: Shirking in the Contemporary Congress: A Reappraisal

description: This paper replicates the findings that appeared in the article "Severing the Electoral Connection: Shirking in the Contemporary Congress," published in the American Journal of Political Science (44:316–325), in which Lawrence Rothenberg and Mitchell Sanders incorporated a new research design and, contrary to all previous studies, found evidence of ideological shirking in the U.S. House of Representatives. We investigate the robustness of their results by reestimating their model with Congress-specific fixed effects and find that their results no longer hold.
DOI: 10.7910/dvn/oscjg0
title: Replication files for "Seeberg, HB & Adams, J 2024, 'Citizens’ Issue Priorities Respond to National Conditions, Less So to Parties’ Issue Emphases', European Journal of Political Research."

description: This is the replication files for "Seeberg, HB & Adams, J 2024, 'Citizens’ Issue Priorities Respond to National Conditions, Less So to Parties’ Issue Emphases', European Journal of Political Research."
DOI: 10.7910/dvn/zgday7
title: Activity level

description: This data set contains the data and source code of the activity level calculation
DOI: 10.7910/dvn/dcydhs
title: Replication Data for: `The War Will Come to Your Street': Explaining Geographic Variation in Terrorism by Rebel Groups

description: Geographic variation in rebels’ use of terrorism is not well understood. This article ex- plains the use of terrorism in civil conflict through examining geographic variation in terrorist attacks across first-level administrative regions. Two explanations are tested using data on 47 groups in 21 countries: that terrorism is intended to punish supporters of counterinsur- gency efforts or to destabilize regions of the country that are both outside of rebels’ military reach and have substantial grievances against the regime. Results show that terrorism is most prevalent in national capitals and regions that are more deprived. The findings suggest that rebel groups face multiple incentives for violence beyond zones of direct military confronta- tion with the government, using both highly visible attacks against the center of power and attacks intended to geographically expand the rebellion. The findings imply maximizing pub- lic service provision and minimizing economic inequality may reduce the breadth of rebels’ potential expansion.
DOI: 10.7910/dvn/ejlcni
title: Replication data for: Lusoria Rhenanan - Ein römisches Schiff am Rhein

description: How fast to roman warships sail and how useful is the sail if the wind comes at an angle?

In order to test the sailing and rowing characteristics of Roman warships, a series of experiments was conducted. The bases for this is a roman riverboat of the type "Navis Lusoria" that was reconstructed in Regensburg in full scale. This boat was equipped with a Silva Marine NX2 system to record boat speed, wind speed and direction, boat position and speed over ground and other parameters not a vital for this study. In addition the number of oar strokes per minute was recorded by hand. 

In this study, we release the digital files written by the NX2 system and the digitized noted.

From this data we calibrated the log response and calculated a polar diagram, which shows how fast the boat can go for each wind speed and wind direction.
DOI: 10.15468/dl.5revwv
title: Occurrence Download

description: A dataset containing 4877 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cnaphalocrocis medinalis"
 ]
}

 The dataset includes 4877 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006773-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayt6vq
title: Occurrence Download

description: A dataset containing 2052224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engraulis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2052224 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006728-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21334/npolar.2026.b73c10a9
title: Abundance time-series of Arctic species in coastal ecosystems
DOI: 10.15468/dl.jsvytf
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mugil thoburni",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006775-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkr39k
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudima frutescens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 689 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006774-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17141183
title: Two decades of pHT measurements along the GO-SHIP A25 section - Dataset

description: Dataset for ESSD submitted paper: Two decades of pHT measurements along the GO-SHIP A25 sectionNote: in previous v1 some pH values were inadvertently removed during in-situ conversion
DOI: 10.5281/zenodo.17789895
title: Two decades of pHT measurements along the GO-SHIP A25 section - Dataset

description: Dataset for ESSD submitted paper: Two decades of pHT measurements along the GO-SHIP A25 sectionNote: in previous v1 some pH values were inadvertently removed during in-situ conversion
DOI: 10.15468/dl.dfu9yy
title: Occurrence Download

description: A dataset containing 21959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Engraulis encrasicolus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 21959 records from 106 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006776-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18454815
title: Data and code for: Theoretical constraints on tidal triggering of slow earthquakes

description: This repository contains the data and analysis codes used to produce the results and figures presented in the manuscript:

"Theoretical constraints on tidal triggering of slow earthquakes".

The archive includes numerical simulation codes, selected processed datasets required to reproduce the figures and analyses, and plotting notebooks.

Access to the files is restricted during peer review.
DOI: 10.5281/zenodo.18454814
title: Data and code for: Theoretical constraints on tidal triggering of slow earthquakes

description: This repository contains the data and analysis codes used to produce the results and figures presented in the manuscript:

"Theoretical constraints on tidal triggering of slow earthquakes".

The archive includes numerical simulation codes, selected processed datasets required to reproduce the figures and analyses, and plotting notebooks.

Access to the files is restricted during peer review.
DOI: 10.21334/npolar.2025.c9306538
title: Sea ice and under-ice biogeochemical data for the BREATHE project: AO-2022 across the Nansen and Amundsen Basins of the Arctic Ocean
DOI: 10.21334/npolar.2025.18d7e643
title: Sea ice biogeochemical data for the BREATHE project: Yermak Plateau 2023
DOI: 10.15468/dl.r65qas
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cetengraulis mysticetus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 149 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006777-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9q2yyw
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudopteris decipiens",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 25 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006778-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqk8zt
title: Occurrence Download

description: A dataset containing 762726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Microcarbo niger"
 ]
}

 The dataset includes 762726 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006731-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.cd726
title: Data from: MicroRNAs Shape Circadian Hepatic Gene Expression on a Transcriptome-Wide Scale

description: A considerable proportion of mammalian gene expression undergoes circadian
 oscillations. Post-transcriptional mechanisms likely make important
 contributions to mRNA abundance rhythms. We have investigated how
 microRNAs (miRNAs) contribute to core clock and clock-controlled gene
 expression using mice in which miRNA biogenesis can be inactivated in the
 liver. While the hepatic core clock was surprisingly resilient to miRNA
 loss, whole transcriptome sequencing uncovered widespread effects on clock
 output gene expression. Cyclic transcription paired with miRNA-mediated
 regulation was thus identified as a frequent phenomenon that affected up
 to 30% of the rhythmic transcriptome and served to post-transcriptionally
 adjust the phases and amplitudes of rhythmic mRNA accumulation. However,
 only few mRNA rhythms were actually generated by miRNAs. Overall, our
 study suggests that miRNAs function to adapt clock-driven gene expression
 to tissue-specific requirements. Finally, we pinpoint several miRNAs
 predicted to act as modulators of rhythmic transcripts, and identify
 rhythmic pathways particularly prone to miRNA regulation.
description: Raw RNA-Seq read counts
 for mRNA and pre-mRNAcount_tables.tar.gzRefined gene annotations for mouse genomeannotations.tar.gzSupplementary File 1 - Transcriptome-wide expression plots.This file contains transcriptome-wide expression plots in control (blue) and Dicer KO animals (red) for mRNA (left panels) and pre-mRNA. The two time series are plotted together in the same graph (vertical lines connect the data points from the two series). Abscissas show Zeitgeber Time, left ordinates RPKM values, right ordinates raw read number only normalised to sequencing depth in the samples. The organisation into folders A-P corresponds to the sectors in the Venn diagram shown in Figure 4A.Supplementary File 1.zipSupplementary File 2 - Primer sequences.This file lists all oligonucleotides used in the study, including the names, sequences, and an explanation of which experiments they were used in.Supplementary File 2.xlsx
DOI: 10.5061/dryad.bc498
title: Data from: Population assignment in autopolyploids

description: Understanding patterns of contemporary gene dispersal within and among
 populations is of critical importance to population genetics and in
 managing populations for conservation. In contrast to diploids, there are
 few studies of gene dispersal in autopolyploids, in part due to complex
 polysomic inheritance and genotype ambiguity. Here we develop a novel
 approach for population assignment for codominant markers for
 autotetraploids and autohexaploids. This method accounts for polysomic
 inheritance, unreduced gametes and unknown allele dosage. It can also
 utilize information regarding the origin and genotype of one parent for
 population assignment of maternal or paternal parents. Using simulations,
 we demonstrate that our approach achieves high levels of accuracy for
 assignment even when population divergence is low (FST ~ 0.06) and with
 only twelve microsatellite loci. We also show that substantially higher
 accuracy is achieved when known maternal information is utilized,
 regardless of whether allele dosage is known. Although this novel method
 exhibited near identical levels of accuracy to Structure when population
 divergence was high, it performed substantially better for most parameters
 at moderate (FST = 0.06) to low levels of divergence (FST = 0.03). These
 methods fill an important gap in the toolset for autopolyploids and pave
 the way for investigating contemporary gene dispersal in a widespread
 group of organisms.
description: Eremophila_mumKnownmicrosatellite data for Eremophila glabra populationsAutoPoly packageAutoPoly R package for population assignment for autopolyploids.AutoPoly_0.1.0.tar.gzmetaPopSim_autoPolybatch scripts for running and evaluating accuracy of metapopulation simulation for autopolyploid population assignmentpowerSimsscripts for running metapopulation simulations
DOI: 10.5061/dryad.d18m1
title: Data from: Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens

description: The New Zealand acanthisittid wrens are the sister-taxon to all other
 “perching birds” (Passeriformes) and – including recently extinct species
 – represent the most diverse endemic passerine family in New Zealand.
 Consequently, they are important for understanding both the early
 evolution of Passeriformes and the New Zealand biota. However, five of the
 seven species have become extinct since the arrival of humans in New
 Zealand, complicating evolutionary analyses. The results of morphological
 analyses have been largely equivocal, and no comprehensive genetic
 analysis of Acanthisittidae has been undertaken. We present novel
 mitochondrial genome sequences from four acanthisittid species (three
 extinct, one extant), allowing us to resolve the phylogeny and revise the
 taxonomy of acanthisittids. Reanalysis of morphological data in light of
 our genetic results confirms a close relationship between the extant
 rifleman (Acanthisitta chloris) and an extinct Miocene wren (Kuiornis
 indicator), making Kuiornis a useful calibration point for molecular
 dating of passerines. Our molecular dating analyses reveal that the
 stout-legged wrens (Pachyplichas) diverged relatively recently from a more
 gracile (Xenicus-like) ancestor. Further, our results suggest a possible
 Early Oligocene origin of the basal Lyall’s wren (Traversia) lineage,
 which would imply that Acanthisittidae survived the Oligocene marine
 inundation of New Zealand and therefore that the inundation was not
 complete.
description: Traversia lyalli
 Sequence DataFASTQ file containing
 filtered, de-mulitplexed and collapsed MiSeq (Illumina) sequencing reads
 corresponding to the Traversia lyalli (S27777) enriched genomic library.
 See main publication for full details on data
 processing.Traversia_lyalli_S27777.fastq.gzPachyplichas yaldwyni Sequence DataFASTQ file containing filtered, de-mulitplexed and collapsed MiSeq (Illumina) sequencing reads corresponding to the Pachyplichas yaldwyni (Av18213) enriched genomic library. See main publication for full details on data processing.Pachyplichas_yaldwyni_Av18213.fastq.gzXenicus longipes Sequence DataFASTQ file containing filtered, de-mulitplexed and collapsed MiSeq (Illumina) sequencing reads corresponding to the Xenicus longipes (Av37320) enriched genomic library. See main publication for full details on data processing.Xenicus_longipes_Av37320.fastq.gzBEAST_filesBEAST files, including input .xml and final maximum clade credibility tree.Morphology_filesFiles for re-analysis of Worthy et al.'s (2010) morphological matrix, including .nex for PAUP* and MrBayes, and final trees.MrBayes_filesMrBayes files, including input .nex and final tree.RAxML_filesRAxML files, including input alignment & partition file and final tree.NGS_pipeline_scriptsScripts for analysis of high-throughput sequencing data.