cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1328838.08fu
title: SH1328838.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1328839.08fu
title: SH1328839.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2007927.08fu
title: SH2007927.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2007928.08fu
title: SH2007928.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1328840.08fu
title: SH1328840.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1328841.08fu
title: SH1328841.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2007929.08fu
title: SH2007929.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2007930.08fu
title: SH2007930.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22607354.v1
title: Additional file 10 of S100A9 plays a key role in Clostridium perfringens beta2 toxin-induced inflammatory damage in porcine IPEC-J2 intestinal epithelial cells

description: Additional file 10: Supplementary Table S7.
DOI: 10.6084/m9.figshare.22607336.v1
title: Additional file 4 of S100A9 plays a key role in Clostridium perfringens beta2 toxin-induced inflammatory damage in porcine IPEC-J2 intestinal epithelial cells

description: Additional file 4: Supplementary Table S1.
DOI: 10.6084/m9.figshare.22607345.v1
title: Additional file 7 of S100A9 plays a key role in Clostridium perfringens beta2 toxin-induced inflammatory damage in porcine IPEC-J2 intestinal epithelial cells

description: Additional file 7: Supplementary Table S4.
DOI: 10.6084/m9.figshare.22607354
title: Additional file 10 of S100A9 plays a key role in Clostridium perfringens beta2 toxin-induced inflammatory damage in porcine IPEC-J2 intestinal epithelial cells

description: Additional file 10: Supplementary Table S7.
DOI: 10.6084/m9.figshare.22607348.v1
title: Additional file 8 of S100A9 plays a key role in Clostridium perfringens beta2 toxin-induced inflammatory damage in porcine IPEC-J2 intestinal epithelial cells

description: Additional file 8: Supplementary Table S5.
DOI: 10.6084/m9.figshare.24186043
title: Additional file 3 of Analysis of differential membrane proteins related to matrix stiffness-mediated metformin resistance in hepatocellular carcinoma cells

description: Additional file 3: Table S2. A list of all identified proteins.
DOI: 10.6084/m9.figshare.24186043.v1
title: Additional file 3 of Analysis of differential membrane proteins related to matrix stiffness-mediated metformin resistance in hepatocellular carcinoma cells

description: Additional file 3: Table S2. A list of all identified proteins.
DOI: 10.6084/m9.figshare.24186046
title: Additional file 4 of Analysis of differential membrane proteins related to matrix stiffness-mediated metformin resistance in hepatocellular carcinoma cells

description: Additional file 4: Table S3. Differential membrane proteins and membrane associated proteins.
DOI: 10.6084/m9.figshare.24186046.v1
title: Additional file 4 of Analysis of differential membrane proteins related to matrix stiffness-mediated metformin resistance in hepatocellular carcinoma cells

description: Additional file 4: Table S3. Differential membrane proteins and membrane associated proteins.
DOI: 10.6084/m9.figshare.22602719.v1
title: Additional file 3 of Clustering pattern and evolution characteristic of microRNAs in grass carp (Ctenopharyngodon idella)

description: Additional file 3: Table S1. miRNA location in the grass carp genome. Table S2. The miRNA family of twelve species analyzed. Table S3. miRNA clusters in the grass carp genome. Table S4. Expression correlation between miRNA duplication of grass crap. Table S5. MiRNA evolution rate. Table S6. The colinearity blocks of protein between grass carp and zebrafish. Table S7. The colinearity blocks of miRNA between grass carp and zebrafish. Table S8. Tissue-specific miRNAs in the grass carp. Table S9. Expression correlation between neighbouring miRNAs of grass carp. Table S10. Expression level of grass carp miRNAs with different genomic context. Table S11. The predicted common miRNA/target pairs.
DOI: 10.6084/m9.figshare.11603271
title: Detrital zircon U–Pb geochronology and Lu–Hf isotopes of the Neoproterozoic Penglai Group and their comparisons with coevally sedimentary strata of the southeastern NCC: Provenance, tectonic affinity and implications

description: <b>Supplementary Table 1.</b> LA–ICP–MS U–Pb dating data for the detrital zircons collected from the Penglai group in the Jiaobei terrane, NCC.
 <b>Supplementary Table 2.</b> Lu–Hf isotopes analytical data for the detrital zircons collected from the Penglai group in the Jiaobei terrane, NCC.
DOI: 10.6084/m9.figshare.11603271.v1
title: Detrital zircon U–Pb geochronology and Lu–Hf isotopes of the Neoproterozoic Penglai Group and their comparisons with coevally sedimentary strata of the southeastern NCC: Provenance, tectonic affinity and implications

description: <b>Supplementary Table 1.</b> LA–ICP–MS U–Pb dating data for the detrital zircons collected from the Penglai group in the Jiaobei terrane, NCC.
 <b>Supplementary Table 2.</b> Lu–Hf isotopes analytical data for the detrital zircons collected from the Penglai group in the Jiaobei terrane, NCC.
DOI: 10.6084/m9.figshare.24186212
title: Additional file 1 of Sirt6 enhances macrophage lipophagy and improves lipid metabolism disorder by regulating the Wnt1/β-catenin pathway in atherosclerosis

description: Additional file 1.
DOI: 10.6084/m9.figshare.24186212.v1
title: Additional file 1 of Sirt6 enhances macrophage lipophagy and improves lipid metabolism disorder by regulating the Wnt1/β-catenin pathway in atherosclerosis

description: Additional file 1.
DOI: 10.6084/m9.figshare.22607479.v1
title: Additional file 6 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

description: Additional file 6: Table S2. Primers used for relative expression analysis of PgHDZ hub genes in the adventitious roots subjected and not subjected to pH stress by RT-qPCR.
DOI: 10.6084/m9.figshare.14738364
title: Additional file 2 of Water reuse and growth inhibition mechanisms for cultivation of microalga Euglena gracilis

description: Additional file 2. The data of statistical analysis results, different metabolites, and pathway analysis from the group EEG and IEG.
DOI: 10.6084/m9.figshare.14738364.v1
title: Additional file 2 of Water reuse and growth inhibition mechanisms for cultivation of microalga Euglena gracilis

description: Additional file 2. The data of statistical analysis results, different metabolites, and pathway analysis from the group EEG and IEG.
DOI: 10.25411/aru.25048466.v1
title: Virtual influencer presentation strategy coding & analysis

description: Coded dataset and analysis for research into representative virtual influencer self-presentation strategies on social media.
DOI: 10.25411/aru.25048466
title: Virtual influencer presentation strategy coding & analysis

description: Coded dataset and analysis for research into representative virtual influencer self-presentation strategies on social media.
DOI: 10.6084/m9.figshare.22607479
title: Additional file 6 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

description: Additional file 6: Table S2. Primers used for relative expression analysis of PgHDZ hub genes in the adventitious roots subjected and not subjected to pH stress by RT-qPCR.
DOI: 10.6084/m9.figshare.22607419.v1
title: Additional file 1 of Delayed endovascular repair for traumatic aortic pseudoaneurysms: experience from an Asian single center

description: Additional file 1: Table S1. Endovascular repair of traumatic aortic pseudoaneurysms. Description of data: The table includes age (years), gender, the ratio of P/A, mechanism (type of accident), time to procedure (days), device, complications, major associated injury, ISS and duration of follow-up (months).
DOI: 10.6084/m9.figshare.22607476.v1
title: Additional file 5 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

description: Additional file 5: Table S1. The HD-Zip genes of the outgroup species used in the phylogenetic tree of the PgHDZ gene family.
DOI: 10.6084/m9.figshare.22607482.v1
title: Additional file 7 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

description: Additional file 7: Table S3. The nucleotide sequences of the PgHDZ gene transcripts identified from ginseng cv. Damaya and their subfamilies.
DOI: 10.6084/m9.figshare.22607419
title: Additional file 1 of Delayed endovascular repair for traumatic aortic pseudoaneurysms: experience from an Asian single center

description: Additional file 1: Table S1. Endovascular repair of traumatic aortic pseudoaneurysms. Description of data: The table includes age (years), gender, the ratio of P/A, mechanism (type of accident), time to procedure (days), device, complications, major associated injury, ISS and duration of follow-up (months).
DOI: 10.6084/m9.figshare.22607476
title: Additional file 5 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

description: Additional file 5: Table S1. The HD-Zip genes of the outgroup species used in the phylogenetic tree of the PgHDZ gene family.
DOI: 10.6084/m9.figshare.22607482
title: Additional file 7 of Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer

description: Additional file 7: Table S3. The nucleotide sequences of the PgHDZ gene transcripts identified from ginseng cv. Damaya and their subfamilies.
DOI: 10.6084/m9.figshare.22607443
title: Additional file 1 of A variant of RAG1 gene identified in severe combined immunodeficiency: a case report

description: Additional file 1: Supplemental Table 1. References for functional validation of RAG1 variation in SCID patients, Supplemental Table 2. Primer sequence of plasmid construct and q-PCR, Supplemental Table 3. Antibody information for Western Blot.
DOI: 10.6084/m9.figshare.22607443.v1
title: Additional file 1 of A variant of RAG1 gene identified in severe combined immunodeficiency: a case report

description: Additional file 1: Supplemental Table 1. References for functional validation of RAG1 variation in SCID patients, Supplemental Table 2. Primer sequence of plasmid construct and q-PCR, Supplemental Table 3. Antibody information for Western Blot.
DOI: 10.6084/m9.figshare.7409456
title: MOESM1 of The plasma peptidome

description: Additional file 1. Supplemental Table I. The tryptic peptidome of human EDTA plasma.
DOI: 10.21223/n00mnu/pr956e
title: 06_Layout-HERLB_PER_2022_LateBlight_Oxa.xlsx

description: :unav
DOI: 10.21223/n00mnu/uulfyf
title: 02_Material_List_HERLB_PER_2022_LateBlight_Oxa.xlsx

description: :unav
DOI: 10.21223/n00mnu/maehq9
title: 03_RRC_G2_serp-HERLB_PER_2022_LateBlight_Oxa.xlsx

description: :unav
DOI: 10.6084/m9.figshare.24711125
title: WGBS of embryonic gonads revealed that long non-coding RNAs in the MHM region might be involved in cell autonomous sex identity and female gonadal development in chickens

description: DNA methylation plays a key role in sex determination and differentiation in vertebrates. However, there are few studies on DNA methylation involved in chicken gonad development, and most focused on male hypermethylated regions (MHM). It is unclear whether there are specific differentially methylated regions (DMRs) in chicken embryonic gonads regulating sex determination and differentiation. Here, the DNA methylation maps showed that the difference of DNA methylation level between sexes was much higher at embryonic day 10 (E10) than that at embryonic day 6 (E6), and the significant differentially methylated regions at both stages were mainly distributed on the Z chromosome, including MHM1 and MHM2. The results of bisulphite sequencing PCR (BSP) and qRT-PCR showed hypomethylation of female MHM and upregulation of long non-coding RNAs (lncRNAs) whose promoter in the MHM region was consistent with the sequencing results, and similar results were in brain and muscle. In female sex-reversed gonads, the methylation pattern of MHM remained unchanged, and the expression levels of the three candidate lncRNAs were significantly decreased compared with those in females, but were significantly increased compared to males. The fluorescence in situ hybridization (FISH) results also showed that these lncRNAs were highly expressed in female embryonic gonads. The results of methyltransferase inhibitor and dual-luciferase reporter assay suggest that lncRNA expression may be regulated by DNA methylation within their promoters. Therefore, we speculated that MHM may be involved in cell-autonomous sex identity in chickens, and that lncRNAs regulated by MHM may be involved in female sexual differentiation.
DOI: 10.6084/m9.figshare.24711125.v1
title: WGBS of embryonic gonads revealed that long non-coding RNAs in the MHM region might be involved in cell autonomous sex identity and female gonadal development in chickens

description: DNA methylation plays a key role in sex determination and differentiation in vertebrates. However, there are few studies on DNA methylation involved in chicken gonad development, and most focused on male hypermethylated regions (MHM). It is unclear whether there are specific differentially methylated regions (DMRs) in chicken embryonic gonads regulating sex determination and differentiation. Here, the DNA methylation maps showed that the difference of DNA methylation level between sexes was much higher at embryonic day 10 (E10) than that at embryonic day 6 (E6), and the significant differentially methylated regions at both stages were mainly distributed on the Z chromosome, including MHM1 and MHM2. The results of bisulphite sequencing PCR (BSP) and qRT-PCR showed hypomethylation of female MHM and upregulation of long non-coding RNAs (lncRNAs) whose promoter in the MHM region was consistent with the sequencing results, and similar results were in brain and muscle. In female sex-reversed gonads, the methylation pattern of MHM remained unchanged, and the expression levels of the three candidate lncRNAs were significantly decreased compared with those in females, but were significantly increased compared to males. The fluorescence in situ hybridization (FISH) results also showed that these lncRNAs were highly expressed in female embryonic gonads. The results of methyltransferase inhibitor and dual-luciferase reporter assay suggest that lncRNA expression may be regulated by DNA methylation within their promoters. Therefore, we speculated that MHM may be involved in cell-autonomous sex identity in chickens, and that lncRNAs regulated by MHM may be involved in female sexual differentiation.
DOI: 10.5281/zenodo.10629590
title: 20240205 screening from serratia extract
DOI: 10.5281/zenodo.10629591
title: 20240205 screening from serratia extract
DOI: 10.6084/m9.figshare.14738508.v1
title: Additional file 4 of BMSC-derived extracellular vesicles intervened the pathogenic changes of scleroderma in mice through miRNAs

description: Additional file 4.
DOI: 10.6084/m9.figshare.14738508
title: Additional file 4 of BMSC-derived extracellular vesicles intervened the pathogenic changes of scleroderma in mice through miRNAs

description: Additional file 4.
DOI: 10.6084/m9.figshare.17895506
title: Dataset for Salvia miltiorrhiza and bioactive compound Tanshinone IIA alleviates cisplatin-induced acute kidney injury through regulating PXR/NF-κB signaling

description: <b>Supplementary
Data-</b><b>Network
pharmacology analysis of <i>Salvia miltiorrhiza</i> in treating AKI</b>