cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.umwx4q
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptolyngbya carnea (Kütz. ex Lemmerm.) Anagn. & Komárek"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006741-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvggga
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytonema julianum (Kütz.) Menegh."
 ]
}

 The dataset includes 37 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006742-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxzcyq
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pachyphytum viride E.Walther, Pachyphytum viride E.Walther, Pachyphytum viride, Pachyphytum viride, Pachyphytum viride E. Walther, Pachyphytum viride E.Walther, Pachyphytum viride E.Walther, 1937, Pachyphytum viride E.Walther, Pachyphytum viride E.Walther, Pachyphytum compactum Rose)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 50 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006743-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9xp66t
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptolyngbya cebennensis (Gomont) Umezaki & Watanabe"
 ]
}

 The dataset includes 18 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006744-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25z47p
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytonema millei Bornet"
 ]
}

 The dataset includes 93 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006745-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj76k3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptolyngbya crassior (Skuja) Anagn."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006747-241024112534372/datasets/export for details.
DOI: 10.15468/dl.qf2m9t
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoradendron herbert-smithii Trel."
 ]
}

 The dataset includes 141 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006748-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abk8pv
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoradendron leptarthrum Rizzini"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006749-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trgv9x
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytonema milleri Bornet"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006750-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w894zb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phoradendron crenatocallosum Rizzini"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006751-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w6s5br
title: Occurrence Download

description: A dataset containing 168 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptolyngbya crosbyana (Tilden) Anagn. & Komárek"
 ]
}

 The dataset includes 168 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006752-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13939469
title: BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph 2.0

description: BOCK is a knowledge graph integrating oligogenic disease information (originally from the Oligogenic Disease Database (Natchtegael et al. 2022)) together with multiple biological networks and ontologies.

Compared to more generic knowledge graphs, we selected specifically networks relevant to understand the molecular mechanisms of epistasis, placing genes as the central entities, and focused on trusted resources describing a large set of human genes and their interactions.

All entities in the KG are linked to their source database entry via an URI (Uniform Resource Identifier) to facilitate integrations within larger bioinformatics linked data repositories.

BOCK 2.0 integrates recent versions of the used ontologies and databases, as well as additional pathway-specific (The Reactome Pathway Knowledgebase 2024, Milacic et al.) and tissue-specific information (COXPRESdb v8, Obayashi et al.). Additionally the database used for the coexpression relation between genes, has been replaced by COXPRESdb v8.

We provide BOCK 2.0 in three formats:



GraphML (Graph Markup Language): a network format enabling the fast import of the KG by multiple libraries (e.g networkx) and tools (e.g Cytoscape).

XML (Extensible Markup Language): a text-encoding system that is human-readable and compatible with many systems.

Neo4J import files: tab-separated files that can be easily imported into Neo4J using the neo4j-admin utils.
description: This work was supported by the European Regional Development Fund (ERDF) and the Brussels-Capital Region-Innoviris within the framework of the Operational Programme 2014-2020 through the ERDF-2020 project ICITY-RDI.BRU [27.002.53.01.4524], an F.N.R.S-F.R.S CDR [35276964], an Innoviris Joint R\&D project Genome4Brussels [2020 RDIR 55b], a Research Foundation-Flanders (F.W.O.) Infrastructure project associated with ELIXIR Belgium [I002819N], the Imagica2 IRP project by the Vrije Universiteit Brussel [IRP8b] and by TAILOR, a project funded by the EU Horizon 2020 research and innovation program [952215]. The authors also thank Foundation 101 Genomes (f101g.org) for fruitful collaboration, creative exchange and scientific support. This work was supported by the Fonds de la Recherche Scientifique (F.R.S-F.N.R.S) with the Fund for Research Training in Industry and Agriculture [40021542].
DOI: 10.5281/zenodo.13939470
title: BOCK: Biological networks and Oligogenic Combinations as a Knowledge graph 2.0

description: BOCK is a knowledge graph integrating oligogenic disease information (originally from the Oligogenic Disease Database (Natchtegael et al. 2022)) together with multiple biological networks and ontologies.

Compared to more generic knowledge graphs, we selected specifically networks relevant to understand the molecular mechanisms of epistasis, placing genes as the central entities, and focused on trusted resources describing a large set of human genes and their interactions.

All entities in the KG are linked to their source database entry via an URI (Uniform Resource Identifier) to facilitate integrations within larger bioinformatics linked data repositories.

BOCK 2.0 integrates recent versions of the used ontologies and databases, as well as additional pathway-specific (The Reactome Pathway Knowledgebase 2024, Milacic et al.) and tissue-specific information (COXPRESdb v8, Obayashi et al.). Additionally the database used for the coexpression relation between genes, has been replaced by COXPRESdb v8.

We provide BOCK 2.0 in three formats:



GraphML (Graph Markup Language): a network format enabling the fast import of the KG by multiple libraries (e.g networkx) and tools (e.g Cytoscape).

XML (Extensible Markup Language): a text-encoding system that is human-readable and compatible with many systems.

Neo4J import files: tab-separated files that can be easily imported into Neo4J using the neo4j-admin utils.
description: This work was supported by the European Regional Development Fund (ERDF) and the Brussels-Capital Region-Innoviris within the framework of the Operational Programme 2014-2020 through the ERDF-2020 project ICITY-RDI.BRU [27.002.53.01.4524], an F.N.R.S-F.R.S CDR [35276964], an Innoviris Joint R\&D project Genome4Brussels [2020 RDIR 55b], a Research Foundation-Flanders (F.W.O.) Infrastructure project associated with ELIXIR Belgium [I002819N], the Imagica2 IRP project by the Vrije Universiteit Brussel [IRP8b] and by TAILOR, a project funded by the EU Horizon 2020 research and innovation program [952215]. The authors also thank Foundation 101 Genomes (f101g.org) for fruitful collaboration, creative exchange and scientific support. This work was supported by the Fonds de la Recherche Scientifique (F.R.S-F.N.R.S) with the Fund for Research Training in Industry and Agriculture [40021542].
DOI: 10.15468/dl.rfdx8c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytonema minus (Schmidle) Lemmermann"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006753-241024112534372/datasets/export for details.
DOI: 10.15468/dl.528hmp
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptolyngbya distincta (Nordstedt) Anagnostidis & Komarek"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006755-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mbwwn
title: Occurrence Download

description: A dataset containing 1332 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scytonema mirabile Bornet"
 ]
}

 The dataset includes 1332 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006756-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qu9ah3
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptolyngbya ectocarpi (Gomont) Anagn. & Komárek"
 ]
}

 The dataset includes 50 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006757-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jamqjq
title: Occurrence Download

description: A dataset containing 13417 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Uapaca Baill."
 ]
}

 The dataset includes 13417 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209683-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qeesz4
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Cordia sagotii I.M.Johnst., Cordia hirta I.M.Johnst.)"
 ]
}

 The dataset includes 546 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003845-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9bwtv
title: Occurrence Download

description: A dataset containing 1280 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physalis grisea (Waterf.) M.Martínez"
 ]
}

 The dataset includes 1280 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001398-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpgqsh
title: Occurrence Download

description: A dataset containing 2370 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ramphotyphlops braminus (Daudin, 1803)"
 ]
}

 The dataset includes 2370 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209690-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vehygd
title: Occurrence Download

description: A dataset containing 102464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ichthyosaura alpestris (Laurenti, 1768)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 102464 records from 615 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015968-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxq9f3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.15_1, CHN.31_1, CHN.24_1, CHN.1_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vitis zhejiang-adstricta P.L.Chiu"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013686-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uf5k4t
title: Occurrence Download

description: A dataset containing 2720 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "PublishingOrg is one of (2a7e3080-28a9-11dd-97cd-b8a03c50a862)",
 "StateProvince is one of (guaviare)"
 ]
 }
 ]
}

 The dataset includes 2720 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0421784-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqhvwy
title: Occurrence Download

description: A dataset containing 47888163 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Denmark"
 ]
}

 The dataset includes 47888163 records from 1159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209681-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ua56ev
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kniphofia caulescens Baker",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052539-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15685834
title: IODP Expedition 339 Alkalinity and pH

description: Alkalinity was determined by Gran titration with an autotitrator (Metrohm 794 basic Titrino) using 0.1 M HCl at 20 degrees C. Report includes alkalinity, correction factor (if applicable), and pH.
DOI: 10.5281/zenodo.15685835
title: IODP Expedition 339 Alkalinity and pH

description: Alkalinity was determined by Gran titration with an autotitrator (Metrohm 794 basic Titrino) using 0.1 M HCl at 20 degrees C. Report includes alkalinity, correction factor (if applicable), and pH.
DOI: 10.15468/dl.sxg3qq
title: Occurrence Download

description: A dataset containing 435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Apalis karamojae (Someren, 1921)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 435 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052541-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7h8v99
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lacustricola kassenjiensis (Ahl, 1924)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((36.6773 -19.208,37.1382 -18.642,37.1382 -15.9401,28.1382 -15.9401,28.1382 -24.9401,35.4247 -24.9401,35.8709 -24.466,36.104 -22.9254,35.9928 -21.5082,35.6186 -21.0464,35.2681 -20.21,36.0896 -19.4412,36.6773 -19.208))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052540-250525065834625/datasets/export for details.
DOI: 10.15468/dl.t4devj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kniphofia caulescens Baker",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052544-250525065834625/datasets/export for details.
DOI: 10.15468/dl.zdbbju
title: Occurrence Download

description: A dataset containing 1150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Peixotoa tomentosa A.Juss."
 ]
}

 The dataset includes 1150 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052542-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxqcmv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lacustricola kassenjiensis (Ahl, 1924)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((37.1382 -6.9401,28.1382 -6.9401,28.1382 -15.9401,37.1382 -15.9401,37.1382 -6.9401))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052545-250525065834625/datasets/export for details.
DOI: 10.15468/dl.hzz3hq
title: Occurrence Download

description: A dataset containing 5438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-77.44252 0.80279,-77.44453 1.46059,-78.20509 1.46629,-78.21622 0.79669,-77.44252 0.80279))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is NT",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5438 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052543-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15131/shef.data.29339444
title: Strategies to support safe wandering in care homes for older adults – what works, for whom, and in which circumstances?: A realist synthesis - Extraction files

description: We undertook a realist review to examine which strategies for supporting safe wandering among care home residents work for whom, in which circumstances. We conducted initial scoping searches to identify relevant literature and theory, and developed context, mechanism, outcome configurations (CMOCs) from the contents of the papers identified. We refined the long list of CMOCs into 11 initial programme theories, 7 of which we prioritised through stakeholder involvement. We searched databases, full texts (via Scite and Litsense), grey literature, and citations of key papers, undertook screening of titles, abstracts and full texts, and synthesised information on links between contexts, mechanisms and outcomes relevant to the 7 prioritised initial programme theories. We synthesised the data into an overarching programme theory and 5 refined programme theories. The realist review findings will be published in an academic journal. The data deposited here detail the data extraction undertaken.