cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11759133.v1
title: Additional file 33 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Alignments of dnmt1, dnmt3, eed, ezh, rbbp4, and suz12.
DOI: 10.6084/m9.figshare.11759127
title: Additional file 31 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: NLR sequences used for Gobiidae tree building.
DOI: 10.6084/m9.figshare.11759124
title: Additional file 30 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: NLR sequences used for vertebrate tree building.
DOI: 10.6084/m9.figshare.11759127.v1
title: Additional file 31 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: NLR sequences used for Gobiidae tree building.
DOI: 10.6084/m9.figshare.11759124.v1
title: Additional file 30 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: NLR sequences used for vertebrate tree building.
DOI: 10.6084/m9.figshare.11759118
title: Additional file 29 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Hmm models used to identify NLRs.
DOI: 10.6084/m9.figshare.11759118.v1
title: Additional file 29 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Hmm models used to identify NLRs.
DOI: 10.6084/m9.figshare.11759106
title: Climatic Data(1961-2015)

description: The data are the five climatic variables with a time period of 1961-2015, including days of temperature ≥ 10℃, accumulated temperature≥10℃, average annual temperature of January (the coldest month), average annual temperature of July (the warmest month), and average annual extremely lowest temperature. The climatic variables with DEM were used to generate a new temperature zone map with a time period of 1961-2015.
DOI: 10.6084/m9.figshare.11759100
title: Additional file 27 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: NLR candidate regions.
DOI: 10.6084/m9.figshare.11759100.v1
title: Additional file 27 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: NLR candidate regions.
DOI: 10.6084/m9.figshare.11759091
title: Additional file 25 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Alignment of CYP sequences.
DOI: 10.6084/m9.figshare.11759091.v1
title: Additional file 25 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Alignment of CYP sequences.
DOI: 10.6084/m9.figshare.11759085
title: Additional file 24 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: CYP sequences used for tree building.
DOI: 10.6084/m9.figshare.11759085.v1
title: Additional file 24 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: CYP sequences used for tree building.
DOI: 10.6084/m9.figshare.11759082
title: Additional file 23 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: CYP sequences used as query.
DOI: 10.6084/m9.figshare.11759079
title: Additional file 1 of Beyond Seek and Destroy: how to Generate Allelic Series Using Genome Editing Tools

description: Additional file 1: Table S1. Primers used for cloning, mutation detection and sequencing
DOI: 10.6084/m9.figshare.11759082.v1
title: Additional file 23 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: CYP sequences used as query.
DOI: 10.6084/m9.figshare.11759076
title: Additional file 22 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Olfactory receptor sequences used for tree building.
DOI: 10.6084/m9.figshare.11759079.v1
title: Additional file 1 of Beyond Seek and Destroy: how to Generate Allelic Series Using Genome Editing Tools

description: Additional file 1: Table S1. Primers used for cloning, mutation detection and sequencing
DOI: 10.6084/m9.figshare.11759073
title: Additional file 21 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Opsin sequences used for tree building.
DOI: 10.6084/m9.figshare.11759076.v1
title: Additional file 22 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Olfactory receptor sequences used for tree building.
DOI: 10.6084/m9.figshare.11759073.v1
title: Additional file 21 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Opsin sequences used for tree building.
DOI: 10.6084/m9.figshare.11759064
title: Additional file 1 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S1. Overview and results for repeat annotation.
DOI: 10.6084/m9.figshare.11759064.v1
title: Additional file 1 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S1. Overview and results for repeat annotation.
DOI: 10.6084/m9.figshare.11759046
title: Additional file 17 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S8. Annotation of NLR genes identified in round goby.
DOI: 10.6084/m9.figshare.11759046.v1
title: Additional file 17 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S8. Annotation of NLR genes identified in round goby.
DOI: 10.6084/m9.figshare.11759037
title: Additional file 15 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S7. Annotation of other immune genes identified in round goby.
DOI: 10.6084/m9.figshare.11759037.v1
title: Additional file 15 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S7. Annotation of other immune genes identified in round goby.
DOI: 10.6084/m9.figshare.11759013
title: Additional file 1 of Falciparum malaria from coastal Tanzania and Zanzibar remains highly connected despite effective control efforts on the archipelago

description: Additional file 1. Additional figures and tables.
DOI: 10.6084/m9.figshare.11759010
title: Additional file 11 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S4. Immune gene sequences used as query.
DOI: 10.6084/m9.figshare.11759013.v1
title: Additional file 1 of Falciparum malaria from coastal Tanzania and Zanzibar remains highly connected despite effective control efforts on the archipelago

description: Additional file 1. Additional figures and tables.
DOI: 10.6084/m9.figshare.11759010.v1
title: Additional file 11 of The round goby genome provides insights into mechanisms that may facilitate biological invasions

description: Table S4. Immune gene sequences used as query.
DOI: 10.6084/m9.figshare.11758998
title: Additional file 2 of Exploring the metabolomic diversity of plant species across spatial (leaf and stem) components and phylogenic groups

description: Additional file 2. Tentatively identifiedÂ secondary metabolits in plants based on metabolite profiling with multivariate analysis.
DOI: 10.6084/m9.figshare.11758998.v1
title: Additional file 2 of Exploring the metabolomic diversity of plant species across spatial (leaf and stem) components and phylogenic groups

description: Additional file 2. Tentatively identifiedÂ secondary metabolits in plants based on metabolite profiling with multivariate analysis.
DOI: 10.6084/m9.figshare.11758992
title: Additional file 1 of Exploring the metabolomic diversity of plant species across spatial (leaf and stem) components and phylogenic groups

description: Additional file 1. Tentatively identified primary metabolits inÂ plants based on metabolite profiling with multivariate analysis.
DOI: 10.6084/m9.figshare.11758992.v1
title: Additional file 1 of Exploring the metabolomic diversity of plant species across spatial (leaf and stem) components and phylogenic groups

description: Additional file 1. Tentatively identified primary metabolits inÂ plants based on metabolite profiling with multivariate analysis.
DOI: 10.6084/m9.figshare.11758974
title: Additional file 9 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 9. The oxysterol quantitation data for the 8 selected animals.
DOI: 10.6084/m9.figshare.11758974.v1
title: Additional file 9 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 9. The oxysterol quantitation data for the 8 selected animals.
DOI: 10.6084/m9.figshare.11758968
title: Additional file 8 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 8. The carcass phenotypes for those animals whose plasma was quantitated for oxysterols.
DOI: 10.6084/m9.figshare.11758968.v1
title: Additional file 8 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 8. The carcass phenotypes for those animals whose plasma was quantitated for oxysterols.
DOI: 10.6084/m9.figshare.11758962
title: Additional file 7 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 7. An excel spreadsheet containing the Minus and Average (MA) data to recreate the IMF versus SC MA plot, with values for 14,476 probes (one probe per gene). The extreme 1 and 5% by PIF are also listed here.
DOI: 10.6084/m9.figshare.11758962.v1
title: Additional file 7 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 7. An excel spreadsheet containing the Minus and Average (MA) data to recreate the IMF versus SC MA plot, with values for 14,476 probes (one probe per gene). The extreme 1 and 5% by PIF are also listed here.
DOI: 10.6084/m9.figshare.11758956
title: Additional file 6 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 6. The genome-wide P values associated with the Phenotypic Impact Factor (PIF) values computed for the IMF versus SC depots. Significance was established from z scores processed through an inverse normal distribution to produce 1 tailed P values.
DOI: 10.6084/m9.figshare.11758956.v1
title: Additional file 6 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 6. The genome-wide P values associated with the Phenotypic Impact Factor (PIF) values computed for the IMF versus SC depots. Significance was established from z scores processed through an inverse normal distribution to produce 1 tailed P values.
DOI: 10.6084/m9.figshare.11758947
title: Additional file 5 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 5. The genome-wide P values associated with differential expression between the IMF versus SC depots. Significance was established using t tests assuming equal variance.
DOI: 10.6084/m9.figshare.11758947.v1
title: Additional file 5 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 5. The genome-wide P values associated with differential expression between the IMF versus SC depots. Significance was established using t tests assuming equal variance.
DOI: 10.6084/m9.figshare.11758941
title: Additional file 1 of Estimated cost for cardiovascular disease risk-based management at a primary healthcare center in Nepal

description: Additional file 1. CVD costing tool.
DOI: 10.6084/m9.figshare.11758941.v1
title: Additional file 1 of Estimated cost for cardiovascular disease risk-based management at a primary healthcare center in Nepal

description: Additional file 1. CVD costing tool.
DOI: 10.6084/m9.figshare.11758938
title: Additional file 4 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 4. An HTM file containing the SAS correlation output for the metabolites and carcass phenotypes. (HTM 232 kb)
DOI: 10.6084/m9.figshare.11758938.v1
title: Additional file 4 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 4. An HTM file containing the SAS correlation output for the metabolites and carcass phenotypes. (HTM 232 kb)
DOI: 10.6084/m9.figshare.11758923
title: Additional file 2 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 2. A CSV file containing the log 2 normalised mean expression for all 96 individual tissue samples (3 genotypes, 2 diets for intact LD muscle only, 6 tissues and 4 individual replicates per treatment cell) used in this analysis. (CSV 25668 kb)
DOI: 10.6084/m9.figshare.11758923.v1
title: Additional file 2 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 2. A CSV file containing the log 2 normalised mean expression for all 96 individual tissue samples (3 genotypes, 2 diets for intact LD muscle only, 6 tissues and 4 individual replicates per treatment cell) used in this analysis. (CSV 25668 kb)
DOI: 10.6084/m9.figshare.11758917
title: Additional file 1 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 1. A multitab Excel spreadsheet containing the lists of genes satisfying sets of criteria indicative of their likely cell type (e.g. IMF adipocyte) of origin.
DOI: 10.6084/m9.figshare.11758917.v1
title: Additional file 1 of Gene expression identifies metabolic and functional differences between intramuscular and subcutaneous adipocytes in cattle

description: Additional file 1. A multitab Excel spreadsheet containing the lists of genes satisfying sets of criteria indicative of their likely cell type (e.g. IMF adipocyte) of origin.
DOI: 10.6084/m9.figshare.12860816
title: R0191_20170919a_videos

description: Rat 0191, skilled reaching data collected on 9/19/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12860816.v1
title: R0191_20170919a_videos

description: Rat 0191, skilled reaching data collected on 9/19/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.11758704
title: List of the V. vulnificus strains analyzed in this study

description: 总共<b> </b>分析了260 <i>株V. vulnificus</i>基因组，包括该研究中新排名的139条基因和公开发表的121个<i> </i>基因组。
DOI: 10.6084/m9.figshare.11757381
title: HIV prevalence in recently incarcerated adult males in the Federal District, Brasilia, Brazil

description: Abstract INTRODUCTION: This study intends to describe a HIV intake screening strategy in recently incarcerated adults in Distrito Federal, Brasilia, Brazil. METHODS: We tested 455 recently incarcerated adults in Distrito Federal in 2016 using rapid tests (RT) applied to oral samples (OS). RESULTS: The estimated frequency of positive tests was 0.88% (95% confidence interval [CI] 0.34% to 2.24%). CONCLUSIONS: The present findings reveal the potential significance of detecting new HIV infection cases in a vulnerable population using point-of-care rapid diagnostic tests.
DOI: 10.6084/m9.figshare.11757342
title: Standardized Precipitation Index Applied to the Identification of the Rainfall Pattern in the Paraná Slope of the Itararé Watershed

description: Abstract This paper aims to evaluate the application of the Standardized Precipitation Index (SPI) for the monthly (SPI-1), quarterly (SPI-3) and annual (SPI-12) scales for Paraná slope of the Itararé watershed (PSIW). Were used the rainfall data from fourteen pluviometric stations obtained from the Paraná Water Institute and the Paraná Agronomic Institute for the period between 1976 to 2012 in the spatiotemporal evaluation of SPI developed by McKee et al. (1993). The interannual variability of SPI-12 and the relative frequency of SPI-3 and SPI-1 categories were evaluated. It was verified that 71.1% of the years were classified as close to normal and however, from July to September there was a significant increase in droughts in the PSIW according to SPI-3 and SPI-1. In the autumn and winter the highest frequency was observed in the categories of drought, whereas in the spring normality prevailed and in the summer the humid categories were more expressive. The use of the SPI index for different scales showed that although the SPI-12 scale prevailed in the normality category, the SPI-3 and SPI-1 scales showed more accurately the quarters and months of greater susceptibility to droughts in the PSIW.
DOI: 10.6084/m9.figshare.11757381.v1
title: HIV prevalence in recently incarcerated adult males in the Federal District, Brasilia, Brazil

description: Abstract INTRODUCTION: This study intends to describe a HIV intake screening strategy in recently incarcerated adults in Distrito Federal, Brasilia, Brazil. METHODS: We tested 455 recently incarcerated adults in Distrito Federal in 2016 using rapid tests (RT) applied to oral samples (OS). RESULTS: The estimated frequency of positive tests was 0.88% (95% confidence interval [CI] 0.34% to 2.24%). CONCLUSIONS: The present findings reveal the potential significance of detecting new HIV infection cases in a vulnerable population using point-of-care rapid diagnostic tests.
DOI: 10.6084/m9.figshare.11757339
title: Hybrid Hydrological Model for Water Flow Prediction in the Piracicaba River Basin-MG, Brazil

description: Abstract The association of conceptual hydrological models and artificial neural networks (ANNs) characterizes a hybrid conformation that represents simultaneously conceptual and non-linear processes related to water flow. This study aimed to evaluate the use of ANNs combined with the conceptual hydrological models IPH II and SAC-SMA to obtain a hybrid model for the estimation of watercourse flows in the Piracicaba River basin, located in the state of Minas Gerais - Brazil. The water flow rates estimated by IPH II and SAC-SMA models were used as input data for the ANN, and a multi-layered perceptron was employed as a neural paradigm. Data from pluviometric, fluviometric, and meteorological stations located in the studied basin and surrounding areas were used for the ANN training and validation. To verify the performance of the hybrid models in estimating water flow, the estimated flow rates were compared with those measured in the fluviometric stations using mean absolute error (MAE), root mean square error (RMSE), bias, Willmott’s concordance index, and Nash-Sutcliffe efficiency index (Ef). The results showed that the use of IPH II model as input data for an ANN increased the accuracy of flow prediction as the hybrid model error decreased. Conversely, if compared to the results from its isolated application, when associated with the ANN, SAC-SMA-model did not improve water flow estimates. Lastly, the hybrid conformation using the IPH II hydrological model improved daily flow estimates of the Piracicaba River basin; therefore, the quality of estimates in a hybrid model depends on the conceptual model used. In addition, the hybrid models had better performance when estimating water flows in larger drainage areas within the Piracicaba River basin.
DOI: 10.6084/m9.figshare.11757342.v1
title: Standardized Precipitation Index Applied to the Identification of the Rainfall Pattern in the Paraná Slope of the Itararé Watershed

description: Abstract This paper aims to evaluate the application of the Standardized Precipitation Index (SPI) for the monthly (SPI-1), quarterly (SPI-3) and annual (SPI-12) scales for Paraná slope of the Itararé watershed (PSIW). Were used the rainfall data from fourteen pluviometric stations obtained from the Paraná Water Institute and the Paraná Agronomic Institute for the period between 1976 to 2012 in the spatiotemporal evaluation of SPI developed by McKee et al. (1993). The interannual variability of SPI-12 and the relative frequency of SPI-3 and SPI-1 categories were evaluated. It was verified that 71.1% of the years were classified as close to normal and however, from July to September there was a significant increase in droughts in the PSIW according to SPI-3 and SPI-1. In the autumn and winter the highest frequency was observed in the categories of drought, whereas in the spring normality prevailed and in the summer the humid categories were more expressive. The use of the SPI index for different scales showed that although the SPI-12 scale prevailed in the normality category, the SPI-3 and SPI-1 scales showed more accurately the quarters and months of greater susceptibility to droughts in the PSIW.
DOI: 10.6084/m9.figshare.11757339.v1
title: Hybrid Hydrological Model for Water Flow Prediction in the Piracicaba River Basin-MG, Brazil

description: Abstract The association of conceptual hydrological models and artificial neural networks (ANNs) characterizes a hybrid conformation that represents simultaneously conceptual and non-linear processes related to water flow. This study aimed to evaluate the use of ANNs combined with the conceptual hydrological models IPH II and SAC-SMA to obtain a hybrid model for the estimation of watercourse flows in the Piracicaba River basin, located in the state of Minas Gerais - Brazil. The water flow rates estimated by IPH II and SAC-SMA models were used as input data for the ANN, and a multi-layered perceptron was employed as a neural paradigm. Data from pluviometric, fluviometric, and meteorological stations located in the studied basin and surrounding areas were used for the ANN training and validation. To verify the performance of the hybrid models in estimating water flow, the estimated flow rates were compared with those measured in the fluviometric stations using mean absolute error (MAE), root mean square error (RMSE), bias, Willmott’s concordance index, and Nash-Sutcliffe efficiency index (Ef). The results showed that the use of IPH II model as input data for an ANN increased the accuracy of flow prediction as the hybrid model error decreased. Conversely, if compared to the results from its isolated application, when associated with the ANN, SAC-SMA-model did not improve water flow estimates. Lastly, the hybrid conformation using the IPH II hydrological model improved daily flow estimates of the Piracicaba River basin; therefore, the quality of estimates in a hybrid model depends on the conceptual model used. In addition, the hybrid models had better performance when estimating water flows in larger drainage areas within the Piracicaba River basin.