cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21166630.v1
title: Targeting PEA3 transcription factors to mitigate small cell lung cancer progression

description: Supplemental data for manuscript on small cell lung cancer relapse mechanisms
DOI: 10.6084/m9.figshare.21166630
title: Targeting PEA3 transcription factors to mitigate small cell lung cancer progression

description: Supplemental data for manuscript on small cell lung cancer relapse mechanisms
DOI: 10.6084/m9.figshare.21716312
title: The number of insects of different orders at each sampling site.csv

description: Insect abundance and diversity in five sampling sites in summer and autumn. <br>
DOI: 10.6084/m9.figshare.21716312.v1
title: The number of insects of different orders at each sampling site.csv

description: Insect abundance and diversity in five sampling sites in summer and autumn. <br>
DOI: 10.34740/kaggle/dsv/4716050
title: AutoXGB
DOI: 10.5519/qd.74rlemfy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8 records)
DOI: 10.6084/m9.figshare.21716318.v1
title: Supplementary Material for: The Efficacy and Safety of Treatment Outcomes for Refractory Benign Esophageal Strictures Using a Novel Combination of Needle-Knife Stricturoplasty, Balloon Dilation, and Steroid Injection (with Video)

description: <b><i>Background and Aims:</i></b> Benign esophageal strictures often present with dysphagia and can significantly impair a patient’s quality of life, especially when refractory to standard endoscopic techniques. When repeat dilations fail to achieve an adequate luminal diameter or resolve dysphagia, further therapy with needle-knife or steroid injections is needed. However, patients can still clinically fail. To manage such strictures, we employed a novel combination of all three techniques. <b><i>Methods:</i></b> Single-center case series of adult patients with benign strictures that were refractory to conventional endoscopic therapy and removable self-expanding metal stenting. Primary clinical success was defined as complete resolution in dysphagia. Secondary outcomes included periodic dilation index (frequency of dilations over the follow-up time), esophageal diameter changes, technical success, and complications. <b><i>Results:</i></b> Four patients (median age 49.7 years old, interquartile range [IQR] 30–59) underwent endoscopic therapy for complex, benign strictures using our triple therapy technique. Etiologies of the strictures included peptic strictures (<i>n</i> = 3) and an anastomotic stricture (<i>n</i> = 1). There was 100% technical success rate with no associated adverse events. There was a 50% clinical success rate, with 1 additional patient having partial improvement in dysphagia. The median diameter of the esophagus before and after triple therapy was 3.2 mm (IQR 3.5–5.5) and 12.8 mm (IQR 11.7–14.2), respectively. The periodic dilation index was 6.3 before and 1.5 after triple therapy. The median length of follow-up was 362.5 days. <b><i>Conclusion:</i></b> Triple combination therapy may be useful in benign strictures that are refractory to standard techniques. Larger studies are needed to validate these findings.
DOI: 10.5281/zenodo.7388694
title: S-DBpedia

description: An open dataset
DOI: 10.34740/kaggle/dsv/4716131
title: 💥📰 Daily Breaking News Twitter Dataset
DOI: 10.5281/zenodo.7431584
title: Vigilance Performance during acute exercise-DATASET

description: Dataset from the paper Gonzalez-Hernandez, F., Etnier, J., Zabala, M., & Sanabria, D. (2017). Vigilance Performance during acute exercise. International Journal of Sport Psychology, doi: 10.7352/IJSP 2017.48.000
DOI: 10.5281/zenodo.7431583
title: Vigilance Performance during acute exercise-DATASET

description: Dataset from the paper Gonzalez-Hernandez, F., Etnier, J., Zabala, M., & Sanabria, D. (2017). Vigilance Performance during acute exercise. International Journal of Sport Psychology, doi: 10.7352/IJSP 2017.48.000
DOI: 10.5281/zenodo.7388701
title: S-DBpedia

description: An open dataset
DOI: 10.5281/zenodo.7388693
title: S-DBpedia

description: An open dataset
DOI: 10.34740/kaggle/dsv/4716148
title: 🇺🇦 Ukraine Conflict Twitter Dataset
DOI: 10.21942/uva.21261885
title: AU + emotion data

description: Stimulus description (AUs and amplitudes) and associated emotion labels given by Western (WC) and East Asian (EA) participants in the basic emotion study (basic_emotion) and conversational emotion study (conversational_emotion).
DOI: 10.21942/uva.21261885.v1
title: AU + emotion data

description: Stimulus description (AUs and amplitudes) and associated emotion labels given by Western (WC) and East Asian (EA) participants in the basic emotion study (basic_emotion) and conversational emotion study (conversational_emotion).
DOI: 10.6084/m9.figshare.21323802
title: Korean populations from 97 and 7 Asian cohorts with genotypes designated as Illumina Infinium Asian Screening Array (ASA-24v1)

description: The Korean cohort genome data consisted of circulating free DNA extracted from 97 serum samples and genome DNA extracted from 26 whole blood samples. Whole Genome Amplification (WGA) for each DNA was performed using the REPLI-g Qiagen kit according to the protocol in the manufacturer's manual. DNA was also genotyped as the Illumina Infinium Asian Screening Array (ASA-24v1), and the scan protocol followed standard Illumina procedures using the Illumina iScan.
DOI: 10.6084/m9.figshare.21323802.v1
title: Korean populations from 97 and 7 Asian cohorts with genotypes designated as Illumina Infinium Asian Screening Array (ASA-24v1)

description: The Korean cohort genome data consisted of circulating free DNA extracted from 97 serum samples and genome DNA extracted from 26 whole blood samples. Whole Genome Amplification (WGA) for each DNA was performed using the REPLI-g Qiagen kit according to the protocol in the manufacturer's manual. DNA was also genotyped as the Illumina Infinium Asian Screening Array (ASA-24v1), and the scan protocol followed standard Illumina procedures using the Illumina iScan.
DOI: 10.6084/m9.figshare.21716357.v1
title: Global Human settlements Mapping

description: The clear boundary between urban and rural areas is gradually disappearing, urban and rural areas are two poles of a gradient with many continuous human settlements in between, which is a concept known as the rural-urban continuum. Little is known about the distribution and change trajectories of the various types in the rural-urban continuum across the globe. Therefore, using global land cover data (FROM-GLC Plus) and global population data (Worldpop) based on method of decision-making tree, this study proposed a method and classification system for global rural-urban continuum mapping and produced the mapping results on a global scale in Google Earth Engine platform.
DOI: 10.6084/m9.figshare.20044394
title: Monthly data at 0.1° resolution

description: Monthly data at 0.1 deg resolution
DOI: 10.6084/m9.figshare.20044394.v2
title: Monthly data at 0.1° resolution

description: Monthly data at 0.1 deg resolution
DOI: 10.6084/m9.figshare.21716357.v2
title: Global Human settlements Mapping

description: The clear boundary between urban and rural areas is gradually disappearing, urban and rural areas are two poles of a gradient with many continuous human settlements in between, which is a concept known as the rural-urban continuum. Little is known about the distribution and change trajectories of the various types in the rural-urban continuum across the globe. Therefore, using global land cover data (FROM-GLC Plus) and global population data (Worldpop) based on method of decision-making tree, this study proposed a method and classification system for global rural-urban continuum mapping and produced the mapping results on a global scale in Google Earth Engine platform.
DOI: 10.5067/gpm/dpr/slh/3a-month/07
title: GPM DPR Spectral Latent Heating Profiles L3 1 month 0.5 degree x 0.5 degree V07
DOI: 10.5067/gpm/dprgmi/csh/2h/06
title: GPM DPR and GMI Combined Stratiform Heating L2 1.5 hours 5 km V06
DOI: 10.5281/zenodo.7038366
title: Environmental morphing enables informed dispersal of the dandelion diaspore

description: This repository contains source data for the following preprint: Seale M, Zhdanov O, Soons MB, Cummins C, Kroll E, Blatt MR, Zare-Behtash H, Busse A, Mastropaolo E, Bullock JM, Viola IM, Nakayama N (2022) Environmental morphing enables informed dispersal of the dandelion diaspore, bioRxiv, https://doi.org/10.1101/542696
DOI: 10.6084/m9.figshare.21711005
title: Supplementary Material for: Incidence of Intermittent Hypoxemia Increases during Clinical Care and Parental Touch in Extremely Preterm Infants

description: <b><i>Objectives:</i></b> An increased frequency of intermittent hypoxemia (IH) is associated with a higher risk for poor developmental outcomes, disability, or death in extremely preterm infants. The objective of the prFesent study is to quantify the effect of hands-on medical and parental interventions on the incidence of IH in extremely preterm infants. <b><i>Methods:</i></b> An observational design with intraindividual comparisons was used. Blood oxygen saturation levels (SpO<sub>2</sub>) and time-lapse video were recorded. Frequency, duration, and time to occurrence of IH (SpO<sub>2</sub> &lt;80% for ≥10 s) were compared between nursing and medical care (NMC), health care by parents, skin-to-skin contact (SSC), touch in incubator, physiotherapy, and rest. Each infant was observed for six consecutive 24-h periods. Inclusion criteria were as follows: gestational age ≤28 weeks, birth weight &lt;1500 g, postnatal age 0–6 weeks, gavage feeding, no severe illnesses or invasive procedures, no mechanical ventilation. <b><i>Results:</i></b> The highest proportion of time with IH occurred during NMC (2.49%) and incubator touch (1.32%), the lowest during SSC (0.74%) and health care by parents (0.67%). IH frequency per hour was highest during NMC (2.95, IQR 1.19–4.01) and lowest during SSC (0.88, IQR 0.37–2.32, <i>p</i> &lt; 0.001). While an increase in IH during NMC was expected, the high incidence during incubator touch was surprising. Parental touch in the incubator is intended to be soothing, not stressful. <b><i>Conclusions:</i></b> Future studies need to clarify how preterm infants process touch, which attributes of touch are fundamental trigger mechanisms of IH, and which handling strategies are most effective in lowering the incidence of IH during hands-on medical care.
DOI: 10.5067/gpm/dprgmi/csh/3b-month/06
title: GPM DPR and GMI Combined Convective Stratiform Heating L3 1 month 0.5 degree x 0.5 degree V06
DOI: 10.6084/m9.figshare.21711212
title: Supplementary Material for: Detection of Acute Traumatic Coagulopathy by Viscoelastic Haemostatic Assays Compared to Standard Laboratory Tests: A Systematic Review

description: <b><i>Introduction:</i></b> The aim of this systematic review was to investigate whether viscoelastic haemostatic assays (VHAs) offer comparative diagnostic ability of acute traumatic coagulopathy (ATC) compared to the standard laboratory coagulation tests (SLCT). ATC is a complication of major trauma characterized by dysfunctional blood clotting, leading to an increased bleeding risk. Additionally, we aimed to analyse the association of VHA with blood product use and health outcomes. <b><i>Methods:</i></b> The search protocol was pre-published and completed on December 2, 2020, assessing manuscripts from 2000 until the present. We searched MEDLINE, Embase, Cochrane Central, BIOSIS, Emcare, CINAHL, and additional online resources and referenced lists. Included were manuscripts that quantitatively reported the detection of ATC using VHAs and SLCTs. A meta-analysis was undertaken including observational studies that reported on patients with injuries to all body regions and results analysed using a random-effects model and reported using pooled odds ratio with 95% confidence intervals (CI). <b><i>Results:</i></b> There were 14 observational studies and one randomized control trial involving 2,715 participants that satisfied inclusion criteria. We observed significant heterogeneity in the definitions of ATC, study design, setting, and patient population. Among observational studies that reported on patients with injuries to all body regions, VHAs were associated with higher odds of diagnosing ATC compared to SLCT (pooled OR 2.4; 95% CI: 1.4–4.1). There was inadequate evidence to suggest VHAs were associated with reduced blood product usage or lower mortality. <b><i>Conclusion:</i></b> VHAs detected more patients with ATC compared to SLCTs. However, the clinical significance and applicability of this finding remains unknown as translation to management was not adequately reported.
DOI: 10.5281/zenodo.3575024
title: Classified runoff events

description: Runoff events of 392 German catchments classified according to the framework proposed in the paper "Process-based framework to characterize and classidy runoff event - the event typology of Germany" by Tarasova L., Basso, S., Wendi, D., Viglione, A., Kumar, R., and R. Merz (2020) published in the Water Resources Research. The data set contains catchment boundaries of 392 German catchments and txt files with classified runoff events corresponding to each catchment.
DOI: 10.5281/zenodo.6818373
title: Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model : Model Ouput Data

description: This upload includes data associated with the manuscript "Global agricultural ammonia emissions simulated with the ORCHIDEE land surface model : )" submitted to Geoscientific Model Development. The dataset includes an output file with the simulated ammonia emissions for the agricultural sector. The emissions (manure management and soil), manure production and soil ammonium concentrations are monthly fields from the simulation for 2007-2015. Additional information is given in the readme file
DOI: 10.17632/dcmtygbpyj.1
title: The Shape of Porphyrins - Normal Structural Decomposition

description: These data include supplementary interactive plots for the paper entitled “The Shape of Porphyrins”, as well as the precalculated databases for the generation of said plots. The NSD program, written in python, is included as source code, which allows for the regeneration of these databases from the CCDC CSD porphyrin subset, available from the Cambridge Crystallographic Data Centre ([ccdc.cam.ac.uk/]ccdc.cam.ac.uk/) or Protein Data Bank (www.rcsb.org). Instructions for the generation of databases are included with an example in a iPython notebooks in the /notebooks/ directory. This program runs with python 3.8, and requires the libraries enumerated in requirements.txt. Additionally, this program is available in an online form at https://www.sengegroup.eu/nsd, offering a simple method to compare measured structures with the precomputed data-set, as well as data reduction, analysis of clustering behavior and plotting.
DOI: 10.48364/isimip.482153
title: ISIMIP3b atmospheric composition input data

description: The Inter-Sectoral Impact Model Intercomparison Project (ISIMIP) provides a framework for the collation of a consistent set of climate impact data across sectors and scales. It also provides a unique opportunity for considering interactions between climate change impacts across sectors through consistent scenarios.<br>The ISIMIP3b part of the third simulation round is dedicated to a quantification of climate-related risks at different levels of global warming and socio-economic change. ISIMIP3b group I simulations are based on historical climate change as simulated in CMIP6 combined with observed historical socio-economic forcing. ISIMIP3b group II simulations are based on climate change according to the CMIP6 future projections combined with socio-economic forcings fixed at 2015 levels. ISIMIP3b group III simulations additionally account for future changes in socio-economic forcing.<br>This dataset contains globally averaged marine surface annual mean CO₂ time series in ppm for driving climate impact model simulations within ISIMIP3b. On the basis of the ISIMIP3b simulation protocol experiments five time series are provided: a) picontrol and historical (1850-2014), b) ssp126, ssp370 and ssp585 (2015-2100).
description: For the historical time series CO₂ concentrations were taken from two different sources. 1850-2005 values were extracted from Meinshausen et al. (2011) while the years 2006-2014 were filled with data from the ESRL Global Monitoring Laboratory website (Dlugokencky & Tans, 2019). The picontrol time series holds the historical 1850 value of 284.73ppm for the full period. For future simulations the concentrations were extracted from Meinshausen et al. (2020) where ssp126 relates to RCP2.6, ssp370 to RCP7.0 and ssp585 to RCP8.5, respectively.
DOI: 10.5281/zenodo.2653707
title: DiSSCo Partner Capabilities Survey 2017

description: Survey carried out among the DiSSCo consortium partners to have insight in the partner capabilities, in preparation for the ESFRI Hearing held early 2018. Contains raw plus corrected data.
DOI: 10.5281/zenodo.3515934
title: Written and spoken digits database for multimodal learning

description: <strong>Database description:</strong> The written and spoken digits database is not a new database but a constructed database from existing ones, in order to provide a ready-to-use database for multimodal fusion [1]. The written digits database is the original MNIST handwritten digits database [2] with no additional processing. It consists of 70000 images (60000 for training and 10000 for test) of 28 x 28 = 784 dimensions. The spoken digits database was extracted from Google Speech Commands [3], an audio dataset of spoken words that was proposed to train and evaluate keyword spotting systems. It consists of 105829 utterances of 35 words, amongst which 38908 utterances of the ten digits (34801 for training and 4107 for test). A pre-processing was done via the extraction of the Mel Frequency Cepstral Coefficients (MFCC) with a framing window size of 50 ms and frame shift size of 25 ms. Since the speech samples are approximately 1 s long, we end up with 39 time slots. For each one, we extract 12 MFCC coefficients with an additional energy coefficient. Thus, we have a final vector of 39 x 13 = 507 dimensions. Standardization and normalization were applied on the MFCC features. To construct the multimodal digits dataset, we associated written and spoken digits of the same class respecting the initial partitioning in [2] and [3] for the training and test subsets. Since we have less samples for the spoken digits, we duplicated some random samples to match the number of written digits and have a multimodal digits database of 70000 samples (60000 for training and 10000 for test). The dataset is provided in six files as described below. Therefore, if a shuffle is performed on the training or test subsets, it must be performed in unison with the same order for the written digits, spoken digits and labels. <strong>Files:</strong> data_wr_train.npy: 60000 samples of 784-dimentional written digits for training; data_sp_train.npy: 60000 samples of 507-dimentional spoken digits for training; labels_train.npy: 60000 labels for the training subset; data_wr_test.npy: 10000 samples of 784-dimentional written digits for test; data_sp_test.npy: 10000 samples of 507-dimentional spoken digits for test; labels_test.npy: 10000 labels for the test subset. <strong>References:</strong> Khacef, L. et al. (2020), "Brain-Inspired Self-Organization with Cellular Neuromorphic Computing for Multimodal Unsupervised Learning". LeCun, Y. & Cortes, C. (1998), “MNIST handwritten digit database”. Warden, P. (2018), “Speech Commands: A Dataset for Limited-Vocabulary Speech Recognition”.
description: {"references": ["LeCun, Y. & Cortes, C. (1998), \"MNIST handwritten digit database\".", "Warden, P. (2018), \"Speech Commands: A Dataset for Limited-Vocabulary Speech Recognition\"."]}
DOI: 10.5281/zenodo.4297574
title: BridgeDb: Human and SARS-related corona virus gene/protein mapping database derived from Wikidata

description: Gene/Protein mappings for human and SARS-related coronaviruses. Data is derived from Wikidata. Mappings from Wikidata to NCBI Gene, RefSeq, UniProt, and Guide to Pharmacology Target are provided in the .bridge file. 171 Wikidata (Wd) identifiers 71 Uniprot-TrEMBL (S) identifiers 70 NCBI Gene (L) identifiers 58 RefSeq (Q) identifiers 10 Guide to Pharmacology Target (Gpt) identifiers Virus name was added as attribute ("virus") to Wikidata Xrefs.
description: License: Creative Commons CC0
DOI: 10.5281/zenodo.4311854
title: Highly time-resolved measurements of element concentrations in PM10 and PM2.5: Comparison of Delhi, Beijing, London, and Krakow

description: Data presented in the manuscript "Highly time-resolved measurements of element concentrations in PM10 and PM2.5: Comparison of Delhi, Beijing, London, and Krakow" (https://doi.org/10.5194/acp-2020-618) by Rai et al. (2020).
DOI: 10.5281/zenodo.6623244
title: Mass spectrometry-based aerosolomics: a new approach to resolve sources, composition, and partitioning of secondary organic aerosol

description: Dataset of Thoma et al. published at Atmospheric Measurements and Techniques: Mass spectrometry-based aerosolomics: a new approach to resolve sources, composition, and partitioning of secondary organic aerosol
DOI: 10.5281/zenodo.7377802
title: Oral Squamous Cell Carcinoma - Mass Spectrometry Imaging

description: The dataset was first featured in Widlak, Piotr, et al. "Detection of molecular signatures of oral squamous cell carcinoma and normal epithelium–application of a novel methodology for unsupervised segmentation of imaging mass spectrometry data." <em>Proteomics</em> 16.11-12 (2016): 1613-1621. For the tissue sample's biochemical preparation details, please refer to the original publication. The biological material was collected from five patients who underwent surgery due to Oral Squamous Cell Carcinoma (OSCC). Tissue samples contained both tumor and surrounding healthy tissue. Each specimen was cut into 10 µm sections in a cryostat. During the sample preparation for the MS imaging, a high-resolution optical scan of each section was captured. Tissue sections were subjected to peptide imaging with the use of a MALDI ToF mass spectrometer. Spectra were recorded within <em>m/z</em> range of 800-4,000. A raster width of 100 µm was applied, and 400 shots were collected from each ablation point. The obtained dataset consisted of 45,738 raw spectra with 109,568 mass channels. An experienced pathologist analyzed the optical scan obtained during the data acquisition process, and tissue regions were annotated. For the highest confidence of the results obtained in this work, we will focus on the two tissue samples out of the entire dataset (8,005 and 11,869 spectra), which have the highest confidence labels, as explained by the pathologist. The preprocessing of the spectra was conducted in MATLAB. Standard preprocessing steps were applied to the spectra. Spectra were resampled to unify the <em>m/z</em> axis across the dataset. The baseline was removed with MATLAB procedure <em>msbackadj()</em> from the Bioinformatics Toolbox. Peaks were aligned using Fast Fourier Transform-based spectral alignment. The TIC normalization ensured a similar intensity level for all spectra. Finally, a GMM approach was used to model the spectra. GMM locates the peak but also estimates the peak area instead of a raw magnitude provided by most methods. Note that the peaks in MSI spectra are right-skewed, so the neighboring GMM components resulting from that phenomenon were identified and merged to better correspond to actual chemical compounds. The resulting dataset is characterized by 3,714 GMM components corresponding to MSI spectrum peaks.
description: {"references": ["Widlak, Piotr, et al. \"Detection of molecular signatures of oral squamous cell carcinoma and normal epithelium\u2013application of a novel methodology for unsupervised segmentation of imaging mass spectrometry data.\" Proteomics 16.11-12 (2016): 1613-1621."]}
DOI: 10.6084/m9.figshare.19210188.v1
title: Mexican hospitality sector inidcators 1992-2018

description: This dataset inlcudes monthly tourism indicators of the Mexican hospitality sector from 1992 to 2018.