cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21218378.v1
title: Factors Contributing to Low Antiretroviral Therapy Enrolment of Children in the Simiyu Region: A Cross-Sectional Creswell’s Mixed-Methods Sequential Explanatory Design

description: <br> The dataset includes children living with HIV aged two to fourteen years whose caregivers were willing to share information regarding their children's medical history. A questionnaire was given to caregivers, and the corresponding answers were recorded. This included the age of the child, marital status of the caregiver, distance to the health facility, education level of the caregiver, source of income, relationship to the child, date of birth, birthplace, time since HIV diagnosis, beliefs about discrimination, history of HIV testing of the child (date tested, ART status, ART start date), and experiences of stigma. For all quantitative data analyses, we utilised Stata™ software. The University of Dodoma and the National Health Research Ethics Sub-Committee (NatHREC) approved the data collection under the National Institute for Medical Research (NIMR). Participation was voluntary and undertaken with written consent. The data were collected cross-sectionally using a mixed-methods sequential explanatory design described by Creswell, 2006.
DOI: 10.6084/m9.figshare.21303294.v1
title: Data from " Chemical Origin of Temperature-Dependent Phase Transition and Conductivity in Hydroxyapatite"

description: This dataset contains data relates to the publication " Chemical Origin of Temperature-Dependent Phase Transition and Conductivity in Hydroxyapatite", by Wang et al., 2022. In this work, we use deep potential molecular dynamics simulation to study Temperature-Dependent Phase Transition and Conductivity in Hydroxyapatite. The deep neural network potential is trained on DFT calculations. This dataset contains the deep potential models and the DFT training data reported in the publication, the input files of vasp, lammps, deepmd-kit, dpgen, and the structures of hydroxyapatite.
DOI: 10.48420/21295788
title: SEM - Zeiss EVO 50

description: Training on microscope by identifying characteristic morphology of dropcast nanoparticles in suspension and practice using energy-dispersive X-ray spectroscopy (EDX)
DOI: 10.48420/21295788.v1
title: SEM - Zeiss EVO 50

description: Training on microscope by identifying characteristic morphology of dropcast nanoparticles in suspension and practice using energy-dispersive X-ray spectroscopy (EDX)
DOI: 10.48420/21295842
title: SEM - Zeiss EVO 50 I

description: Confirmation that morphology of dropcast MXene suspension (product) and sediment components align with XRD findings using EDX
DOI: 10.48420/21295842.v1
title: SEM - Zeiss EVO 50 I

description: Confirmation that morphology of dropcast MXene suspension (product) and sediment components align with XRD findings using EDX
DOI: 10.48420/21295878
title: SEM - Zeiss EVO 50 II

description: Confirmation that morphology of dropcast MXene suspension (product) and sediment components align with XRD findings using EDX
DOI: 10.48420/21295878.v1
title: SEM - Zeiss EVO 50 II

description: Confirmation that morphology of dropcast MXene suspension (product) and sediment components align with XRD findings using EDX
DOI: 10.48420/21296178
title: SEM - Tescan Mira3

description: Explore whether freezing of dropcast suspension during drying process has impeded chance of imaging particles to acquire a size distribution
DOI: 10.48420/21296178.v1
title: SEM - Tescan Mira3

description: Explore whether freezing of dropcast suspension during drying process has impeded chance of imaging particles to acquire a size distribution
DOI: 10.48420/21300891.v1
title: Model outputs 2: mode 2 sensitivity tests

description: This dataset contains the model outputs for all simulations except the mode 2 sensitivity studies. <br> <strong>Data file structure</strong> The model output files are provided in the netCDF file format (.nc). The mode 2 sensitivity test investigated shallower (1.3 km) clouds with updraft speeds of 2 m s<sup>-1</sup>. The model output filename convection is as follows: <br> aerosol_temp_m2_#.nc <br> where aerosol (natural or nearcity) indicates the aerosol size distribution, temp (cold or warm) indicates the cloud base temperature, m2 refers to mode 2, and # is the freezing fraction of the mode 2 simulation.(see details below). <br> <strong># refers to the freezing fraction of mode 2 :</strong> 05 0.5 03 0.3 01 0.1 001 0.01 0001 0.001 0.0001 0.0001 <br> For example, natural_cold_m2_05.nc refers to a simulation of cloud with a depth of 1.3 km, updraft speed of 2 m s-1, with a natural aerosol size distribution and cloud base temperature of 0 °C and a mode 2 freezing fraction of 0.5.
DOI: 10.48420/21300891
title: Model outputs 2: mode 2 sensitivity tests

description: This dataset contains the model outputs for all simulations except the mode 2 sensitivity studies. <br> <strong>Data file structure</strong> The model output files are provided in the netCDF file format (.nc). The mode 2 sensitivity test investigated shallower (1.3 km) clouds with updraft speeds of 2 m s<sup>-1</sup>. The model output filename convection is as follows: <br> aerosol_temp_m2_#.nc <br> where aerosol (natural or nearcity) indicates the aerosol size distribution, temp (cold or warm) indicates the cloud base temperature, m2 refers to mode 2, and # is the freezing fraction of the mode 2 simulation.(see details below). <br> <strong># refers to the freezing fraction of mode 2 :</strong> 05 0.5 03 0.3 01 0.1 001 0.01 0001 0.001 0.0001 0.0001 <br> For example, natural_cold_m2_05.nc refers to a simulation of cloud with a depth of 1.3 km, updraft speed of 2 m s-1, with a natural aerosol size distribution and cloud base temperature of 0 °C and a mode 2 freezing fraction of 0.5.
DOI: 10.34740/kaggle/dsv/4306499
title: +5000 Kurdish Songs
DOI: 10.6084/m9.figshare.21303264
title: download.txt.txt

description: All literature on the effects of nitrogen deposition on carbon, nitrogen and phosphorus chemometric characteristics of grassland ecosystems from 1uie1 2000 to 31 December 2021 were searched in the web of science core set database, and a total of 14912 papers were included for visualization and analysis on CiteSpace 6.1.R3 software after de-duplication.
DOI: 10.6084/m9.figshare.21303264.v1
title: download.txt.txt

description: All literature on the effects of nitrogen deposition on carbon, nitrogen and phosphorus chemometric characteristics of grassland ecosystems from 1uie1 2000 to 31 December 2021 were searched in the web of science core set database, and a total of 14912 papers were included for visualization and analysis on CiteSpace 6.1.R3 software after de-duplication.
DOI: 10.5281/zenodo.6360347
title: Data/ codes used in the the Natural Hazards and Earth System Sciences (NHESS) publication titled "Wind-Wave Characteristics and extremes along the Emilia-Romagna coast" by Pranavam Ayyappan Pillai et al. (2022)

description: The archive contains datasets and codes used in the manuscript titled "Wind-Wave Characteristics and extremes along the Emilia-Romagna coast", and published in the journal <em>Natural Hazards and Earth System Sciences</em> (<em>NHESS</em>) by Pranavam Ayyappan Pillai et al., 2022. Pranavam Ayyappan Pillai, U., Pinardi, N., Federico, I., Causio, S., Trotta, F., Unguendoli, S., and Valentini, A.: Wind-Wave Characteristics and extremes along the Emilia-Romagna coast, Nat. Hazards Earth Syst. Sci. Discuss. https://doi.org/10.5194/nhess-2022-103, 2022.
DOI: 10.34740/kaggle/dsv/4306512
title: Suicidal behavior of youth
DOI: 10.21227/c009-a371
title: sample

description: This data is a conversion of remote sensing data into a VOC2012 dataset.
DOI: 10.34740/kaggle/ds/2275519
title: 4D Temperature Monitoring with BEL
DOI: 10.5258/soton/d2361
title: Dataset for hundred-meter-scale, kilowatt peak-power, near-diffraction-limited, mid-infrared pulse delivery via low-loss hollow-core fiber

description: This dataset supports the publication: Qiang Fu et al (2022) Hundred meter-scale, kilowatt peak-power, near-diffraction-limited, mid-infrared pulse delivery via low-loss hollow-core fiber. Optics Letters. Link: https://doi.org/10.1364/OL.473230
DOI: 10.5281/zenodo.7030953
title: CLEC-1 is a death sensor that limits antigen cross-presentation by dendritic cells and represents a target for cancer immunotherapy

description: Tumors exploit numerous immune checkpoints including those deployed by myeloid cells to curtail anti-tumor immunity. Here, we show that the C-type lectin receptor CLEC-1 expressed by myeloid cells senses dead cells killed by programmed necrosis. Moreover, we identified TRIM21 as an endogenous ligand over-expressed in various cancers. Interestingly, we observed that in mice CLEC-1 blockade combined with chemotherapy to prolong survival in tumor models. Loss of CLEC-1 reduced the accumulation of immunosuppressive myeloid cells in tumors and invigorated the activation state of dendritic cells (DCs), thereby increasing T cell responses. Mechanistically, we found that the absence of CLEC-1 increased the cross-presentation of dead-cell associated antigens by conventional type-1 DCs. Importantly, we identified anti-human CLEC-1 antagonist antibodies able to enhance anti-tumor immunity in CLEC-1 humanized mice. Altogether, our results demonstrate that CLEC-1 acts as an immune checkpoint in myeloid cells and support CLEC-1 as a novel target for cancer immunotherapy.
DOI: 10.5281/zenodo.7030954
title: CLEC-1 is a death sensor that limits antigen cross-presentation by dendritic cells and represents a target for cancer immunotherapy

description: Tumors exploit numerous immune checkpoints including those deployed by myeloid cells to curtail anti-tumor immunity. Here, we show that the C-type lectin receptor CLEC-1 expressed by myeloid cells senses dead cells killed by programmed necrosis. Moreover, we identified TRIM21 as an endogenous ligand over-expressed in various cancers. Interestingly, we observed that in mice CLEC-1 blockade combined with chemotherapy to prolong survival in tumor models. Loss of CLEC-1 reduced the accumulation of immunosuppressive myeloid cells in tumors and invigorated the activation state of dendritic cells (DCs), thereby increasing T cell responses. Mechanistically, we found that the absence of CLEC-1 increased the cross-presentation of dead-cell associated antigens by conventional type-1 DCs. Importantly, we identified anti-human CLEC-1 antagonist antibodies able to enhance anti-tumor immunity in CLEC-1 humanized mice. Altogether, our results demonstrate that CLEC-1 acts as an immune checkpoint in myeloid cells and support CLEC-1 as a novel target for cancer immunotherapy.
DOI: 10.5281/zenodo.7180070
title: CLEC-1 is a death sensor that limits antigen cross-presentation by dendritic cells and represents a target for cancer immunotherapy

description: Tumors exploit numerous immune checkpoints including those deployed by myeloid cells to curtail anti-tumor immunity. Here, we show that the C-type lectin receptor CLEC-1 expressed by myeloid cells senses dead cells killed by programmed necrosis. Moreover, we identified TRIM21 as an endogenous ligand over-expressed in various cancers. Interestingly, we observed that in mice CLEC-1 blockade combined with chemotherapy to prolong survival in tumor models. Loss of CLEC-1 reduced the accumulation of immunosuppressive myeloid cells in tumors and invigorated the activation state of dendritic cells (DCs), thereby increasing T cell responses. Mechanistically, we found that the absence of CLEC-1 increased the cross-presentation of dead-cell associated antigens by conventional type-1 DCs. Importantly, we identified anti-human CLEC-1 antagonist antibodies able to enhance anti-tumor immunity in CLEC-1 humanized mice. Altogether, our results demonstrate that CLEC-1 acts as an immune checkpoint in myeloid cells and support CLEC-1 as a novel target for cancer immunotherapy.
DOI: 10.5281/zenodo.7180093
title: Lipidomic profiling indicate protection of hypoxic-ischemic brain injury on neonatal rats ingesting Acer truncatum Bunge oil

description: Hypoxic ischemic encephalopathy (HIE) has a serious effect on newborn growth and development, and there are currently no effective interventions. In this study, we discovered administering <em>Acer truncatum Bunge seed </em>oil (ASO) for 30 days reduces the damage caused by HIE and improves the learning and memory ability. Using lipidomics approaches to compare metabolite changes in HIE and sham rats, we discovered that glycerophospholipids, plasmalogen, unsaturated fatty acids decreased and lysophospholipids increased in HIE rats' brain. After 30 days of ASO treatment, glycerophospholipids, plasmalogen, and unsaturated fatty acids increased in serum and brain, while lysophospholipids and oxidized glycerophospholipids decreased. Based on cluster, correlation and attribution analysis, we find changes of glycerophospholipids, plasmalogen, w3/6/9 fatty acid, oxidized GP and lysophospholipids contributes to improvement of cognitive ability, indicated by eliminating the oxidative injury by HIE. Our findings suggest that ASO may be a potential special medical food for ischemic hypoxic newborns.
DOI: 10.5281/zenodo.7180092
title: Lipidomic profiling indicate protection of hypoxic-ischemic brain injury on neonatal rats ingesting Acer truncatum Bunge oil

description: Hypoxic ischemic encephalopathy (HIE) has a serious effect on newborn growth and development, and there are currently no effective interventions. In this study, we discovered administering <em>Acer truncatum Bunge seed </em>oil (ASO) for 30 days reduces the damage caused by HIE and improves the learning and memory ability. Using lipidomics approaches to compare metabolite changes in HIE and sham rats, we discovered that glycerophospholipids, plasmalogen, unsaturated fatty acids decreased and lysophospholipids increased in HIE rats' brain. After 30 days of ASO treatment, glycerophospholipids, plasmalogen, and unsaturated fatty acids increased in serum and brain, while lysophospholipids and oxidized glycerophospholipids decreased. Based on cluster, correlation and attribution analysis, we find changes of glycerophospholipids, plasmalogen, w3/6/9 fatty acid, oxidized GP and lysophospholipids contributes to improvement of cognitive ability, indicated by eliminating the oxidative injury by HIE. Our findings suggest that ASO may be a potential special medical food for ischemic hypoxic newborns.
DOI: 10.6084/m9.figshare.21303387
title: The effects of deception on memory in daily life: Does intentionality matter?

description: None
DOI: 10.6084/m9.figshare.21303387.v1
title: The effects of deception on memory in daily life: Does intentionality matter?

description: None
DOI: 10.6084/m9.figshare.21303021
title: Supplementary Data

description: Supplementary Data
DOI: 10.6084/m9.figshare.21303021.v1
title: Supplementary Data

description: Supplementary Data
DOI: 10.25375/uct.20239611
title: Curriculum Decolonization in the University of Cape Town: Research, Policy, and Practice - Qualitative Interview data

description: This dataset captures the semi-structured qualitative interviews for the study - <strong>Curriculum Decolonization in the University of Cape Town: Research, Policy, and Practice</strong>. The study’s broad question is what does curriculum decolonization entail at UCT concerning research, policy, and practice? The title page and abstract of the thesis are included to provide foundational background and understanding of the dataset. The metadata captures information from eleven interviews, while the seven transcript data capture data from participants that consented to publish their data and knowledge. Average interview duration is around 60-minutes and average number of words in the transcript is 8,000. The study was supervised by Nomkhosi Xulu-Gama, domiciling at Sociology Department, University of Cape Town.
DOI: 10.25375/uct.20239611.v1
title: Curriculum Decolonization in the University of Cape Town: Research, Policy, and Practice - Qualitative Interview data

description: This dataset captures the semi-structured qualitative interviews for the study - <strong>Curriculum Decolonization in the University of Cape Town: Research, Policy, and Practice</strong>. The study’s broad question is what does curriculum decolonization entail at UCT concerning research, policy, and practice? The title page and abstract of the thesis are included to provide foundational background and understanding of the dataset. The metadata captures information from eleven interviews, while the seven transcript data capture data from participants that consented to publish their data and knowledge. Average interview duration is around 60-minutes and average number of words in the transcript is 8,000. The study was supervised by Nomkhosi Xulu-Gama, domiciling at Sociology Department, University of Cape Town.
DOI: 10.6084/m9.figshare.17057624
title: Microclimatic data

description: Air temperature (T), relative humidity (RH), photosynthetically active radiation (PAR) and light intensity (L) recorded hourly by dataloggers.<br>
DOI: 10.5281/zenodo.7180160
title: miRNAture v.1.1: updated dataset with curated metazoan miRBase v.22.1 and Rfam-14.4 miRNA families.

description: This folder contains the updated data to annotate miRNAs using miRNAture v.1.1. As usual, it includes CMs, HMMs and required pre-calculated data to validate mature miRNAs (corrected hairpins, mature files and miRBase genomes). It contains a 1034 and 1124 metazoan miRNA families curated from miRBase v.22.1 and Rfam 14.4, respectively. To use this dataset, refer the path of this uncompressed folder with the -dataF/-datadir flag in miRNature v.1.1.
DOI: 10.5281/zenodo.7180159
title: miRNAture v.1.1: updated dataset with curated metazoan miRBase v.22.1 and Rfam-14.4 miRNA families.

description: This folder contains the updated data to annotate miRNAs using miRNAture v.1.1. As usual, it includes CMs, HMMs and required pre-calculated data to validate mature miRNAs (corrected hairpins, mature files and miRBase genomes). It contains a 1034 and 1124 metazoan miRNA families curated from miRBase v.22.1 and Rfam 14.4, respectively. To use this dataset, refer the path of this uncompressed folder with the -dataF/-datadir flag in miRNature v.1.1.
DOI: 10.5281/zenodo.7180168
title: All routines to reproduce the figures from "Evanescent Inertial Waves", JFM 2021

description: The two Zip files contain all the routines and data sets to reproduce the figures presented in the paper: Evanescent Inertial waves, JFM, 2021: https://doi.org/10.1017/jfm.2021.343 The Matlab routine is used to reproduce figure 1, the PIV vector field have been obtained using the open source software DPIVsoft (download from https://www.irphe.fr/~meunier/). All other figures are generated from the Python notebook.
DOI: 10.5281/zenodo.7180169
title: All routines to reproduce the figures from "Evanescent Inertial Waves", JFM 2021

description: The two Zip files contain all the routines and data sets to reproduce the figures presented in the paper: Evanescent Inertial waves, JFM, 2021: https://doi.org/10.1017/jfm.2021.343 The Matlab routine is used to reproduce figure 1, the PIV vector field have been obtained using the open source software DPIVsoft (download from https://www.irphe.fr/~meunier/). All other figures are generated from the Python notebook.
DOI: 10.5281/zenodo.7180246
title: All routines to reproduce the figures from "Evanescent Inertial Waves", JFM 2021

description: The two Zip files contain all the routines and data sets to reproduce the figures presented in the paper: Evanescent Inertial waves, JFM, 2021: https://doi.org/10.1017/jfm.2021.343 The Matlab routine is used to reproduce figure 1, the PIV vector field have been obtained using the open source software DPIVsoft (download from https://www.irphe.fr/~meunier/). All other figures are generated from the Python notebook.
DOI: 10.6084/m9.figshare.21303478
title: Additional file 1 of Prevalence of co-infection and genetic diversity of avian haemosporidian parasites in two rehabilitation facilities in Iran: implications for the conservation of captive raptors

description: Additional file 1. The general information of the sequences retrieved from the MalAvi dataset. This table includes the lineages’ names, genus, host family, host species, host statues, continent, country, and references.
DOI: 10.6084/m9.figshare.21303478.v1
title: Additional file 1 of Prevalence of co-infection and genetic diversity of avian haemosporidian parasites in two rehabilitation facilities in Iran: implications for the conservation of captive raptors

description: Additional file 1. The general information of the sequences retrieved from the MalAvi dataset. This table includes the lineages’ names, genus, host family, host species, host statues, continent, country, and references.
DOI: 10.6084/m9.figshare.21303484.v1
title: Additional file 3 of Prevalence of co-infection and genetic diversity of avian haemosporidian parasites in two rehabilitation facilities in Iran: implications for the conservation of captive raptors

description: Additional file 3. More detailed information about the number sequences for each genus analysis, the number of partitions, and the frequency of groups dedicated to each partition are given.
DOI: 10.6084/m9.figshare.21303484
title: Additional file 3 of Prevalence of co-infection and genetic diversity of avian haemosporidian parasites in two rehabilitation facilities in Iran: implications for the conservation of captive raptors

description: Additional file 3. More detailed information about the number sequences for each genus analysis, the number of partitions, and the frequency of groups dedicated to each partition are given.
DOI: 10.6084/m9.figshare.21303502
title: Additional file 2 of A graph-based approach for the visualisation and analysis of bacterial pangenomes

description: Additional file 2: Table S1. Metadata for the Legionella genomes used in the study.
DOI: 10.6084/m9.figshare.21303502.v1
title: Additional file 2 of A graph-based approach for the visualisation and analysis of bacterial pangenomes

description: Additional file 2: Table S1. Metadata for the Legionella genomes used in the study.
DOI: 10.6084/m9.figshare.21303505
title: Additional file 3 of A graph-based approach for the visualisation and analysis of bacterial pangenomes

description: Additional file 3: Data 1. Graphia file for the S. aureus genome-genome similarity network, as in Figure 2. Data 2. Graphia file for the S. aureus gene-gene similarity network, as in Figure 3. Data 3. Graphia file for the S. aureus gene synteny network, as in Figure 4. Data 4. Graphia file for the L. pneumophila genome-genome similarity network, as in Figure 5. Data 5. Graphia file for the L. pneumophila gene-gene similarity network, as in Figure 5. Data 6. Graphia file for the L. pneumophila gene synteny network, as in Figure 5.
DOI: 10.6084/m9.figshare.21303505.v1
title: Additional file 3 of A graph-based approach for the visualisation and analysis of bacterial pangenomes

description: Additional file 3: Data 1. Graphia file for the S. aureus genome-genome similarity network, as in Figure 2. Data 2. Graphia file for the S. aureus gene-gene similarity network, as in Figure 3. Data 3. Graphia file for the S. aureus gene synteny network, as in Figure 4. Data 4. Graphia file for the L. pneumophila genome-genome similarity network, as in Figure 5. Data 5. Graphia file for the L. pneumophila gene-gene similarity network, as in Figure 5. Data 6. Graphia file for the L. pneumophila gene synteny network, as in Figure 5.
DOI: 10.6084/m9.figshare.21303526
title: Additional file 1 of MRI adipose tissue segmentation and quantification in R (RAdipoSeg)

description: Additional file 1: can be viewed in RStudio ( https://www.rstudio.com/ ) Complete code for performing adipose tissue segmentation with RAdiposeg. This format allows for convenient and direct use of the code in RStudio.