cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3854275_d4.v1
title: MOESM4 of Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics

description: Additional file 4: Table S2. Details of the PRISM-SRM assays developed for the SPOP peptides in the mutation and non-mutation regions.
DOI: 10.6084/m9.figshare.c.3854275_d4
title: MOESM4 of Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics

description: Additional file 4: Table S2. Details of the PRISM-SRM assays developed for the SPOP peptides in the mutation and non-mutation regions.
DOI: 10.6084/m9.figshare.c.3852916_d13.v1
title: Additional file 9: Table S3. of Expansion and evolutionary patterns of cysteine-rich peptides in plants

description: Sites of positively selected pear CRP genes as estimated by BEB analysis under the M8 model. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3852916_d13
title: Additional file 9: Table S3. of Expansion and evolutionary patterns of cysteine-rich peptides in plants

description: Sites of positively selected pear CRP genes as estimated by BEB analysis under the M8 model. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3852916_d8.v1
title: Additional file 4: Table S2. of Expansion and evolutionary patterns of cysteine-rich peptides in plants

description: Collinear gene pairs. Collinearity analysis was carried out using MCScanX and screened for E value &lt;0.01. (XLSX 147 kb)
DOI: 10.15468/dl.tdazqq
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vampyroteuthidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036908-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3849523_d1.v1
title: Additional file 1: of Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family

description: Sanger chromatograms of primer products C1-C11 and K1-K8. (ZIP 2226 kb)
DOI: 10.6084/m9.figshare.c.3849523_d1
title: Additional file 1: of Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family

description: Sanger chromatograms of primer products C1-C11 and K1-K8. (ZIP 2226 kb)
DOI: 10.6084/m9.figshare.c.3844417_d1
title: Additional file 10: Table S9. of The first succinylome profile of Trichophyton rubrum reveals lysine succinylation on proteins involved in various key cellular processes

description: The PPI network analysis of the succinylated proteins. (XLSX 185Â kb)
DOI: 10.6084/m9.figshare.c.3845752_d8.v1
title: Additional file 5: Table S4. of Characterization of the peripheral blood transcriptome and adaptive evolution of the MHC I and TLR gene families in the wolf (Canis lupus)

description: KOG functional classification of wolf blood transcriptome. (XLSX 103Â kb)
DOI: 10.6084/m9.figshare.c.3844408_d1.v1
title: MOESM1 of Proteomic analysis of sputum reveals novel biomarkers for various presentations of asthma

description: Additional file 1: Table S1. The proteins were identified in the sputum from patients with CA, CVA, and CTVA.
DOI: 10.6084/m9.figshare.c.3844408_d1
title: MOESM1 of Proteomic analysis of sputum reveals novel biomarkers for various presentations of asthma

description: Additional file 1: Table S1. The proteins were identified in the sputum from patients with CA, CVA, and CTVA.
DOI: 10.6084/m9.figshare.c.3842146_d1
title: Additional file 1: of Comprehensive in silico allergenicity assessment of novel protein engineered chimeric Cry proteins for safe deployment in crops

description: In silico assessment of pepsin digestibility sites in Cry1AcF and Cry1Aabc using Expasy peptide cutter. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3840103_d2.v1
title: Additional file 2: of The three-dimensional genome organization of Drosophila melanogaster through data integration

description: Three supplementary tables, each included as a separate tab. Table S1. Summary of the Pearsonâ  s correlation between contact probability from structure models and Hi-C experiment. Table S2. Summary of chromosomal territory index (TI) for individual arms and pairs of homologous arms. Table S3. The sphere size of structural units of model. (XLS 131Â kb)
DOI: 10.6084/m9.figshare.c.3840103_d2
title: Additional file 2: of The three-dimensional genome organization of Drosophila melanogaster through data integration

description: Three supplementary tables, each included as a separate tab. Table S1. Summary of the Pearsonâ  s correlation between contact probability from structure models and Hi-C experiment. Table S2. Summary of chromosomal territory index (TI) for individual arms and pairs of homologous arms. Table S3. The sphere size of structural units of model. (XLS 131Â kb)
DOI: 10.6084/m9.figshare.c.3839173_d1.v1
title: MOESM1 of Synthetic lethal short hairpin RNA screening reveals that ring finger protein 183 confers resistance to trametinib in colorectal cancer cells

description: Additional file 1: Table S1. Abundance of genomic short hairpin RNA (shRNA) fragments under different conditions.
DOI: 10.6084/m9.figshare.c.3839173_d1
title: MOESM1 of Synthetic lethal short hairpin RNA screening reveals that ring finger protein 183 confers resistance to trametinib in colorectal cancer cells

description: Additional file 1: Table S1. Abundance of genomic short hairpin RNA (shRNA) fragments under different conditions.
DOI: 10.15468/dl.xu8une
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Munididae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 225 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036909-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3838963_d9
title: Additional file 9: Table S5. of Population and allelic variation of A-to-I RNA editing in human transcriptomes

description: Data sources of 12 RNA-seq replicates of GM12878. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3838963_d9.v1
title: Additional file 9: Table S5. of Population and allelic variation of A-to-I RNA editing in human transcriptomes

description: Data sources of 12 RNA-seq replicates of GM12878. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3838963_d8.v1
title: Additional file 8: of Population and allelic variation of A-to-I RNA editing in human transcriptomes

description: In-house python scripts for the ASED analysis. List of command-line commands and python scripts to generate allele-specific alignments along with R code for paired statistical test. (GZ 12 kb)
DOI: 10.6084/m9.figshare.c.3838963_d8
title: Additional file 8: of Population and allelic variation of A-to-I RNA editing in human transcriptomes

description: In-house python scripts for the ASED analysis. List of command-line commands and python scripts to generate allele-specific alignments along with R code for paired statistical test. (GZ 12 kb)
DOI: 10.6084/m9.figshare.c.3838096_d1
title: Additional file 1: of Proteomic analysis of human follicular fluid associated with successful in vitro fertilization

description: The information of antibodies and secondaries for Western blotting. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3836830_d5.v1
title: Additional file 5: Table S4. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: List of differentially expressed genes annotated as transcription factors. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3836830_d4.v1
title: Additional file 4: Table S3. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: Functional annotation of differentially expressed genes identified by RNA-seq in Pepino hypocotyls 48Â h after waterlogging treatment. â  FCâ   represents fold change of the gene. (XLS 1012 kb)
DOI: 10.6084/m9.figshare.c.3836839_d3.v1
title: Additional file 12: of Culturing and transcriptome profiling of progenitor-like colonies derived from adult mouse pancreas

description: is Table S8 presenting original HTS data sets for mRNAs and lncRNAs. (XLSX 12293 kb)
DOI: 10.6084/m9.figshare.c.3836839_d3
title: Additional file 12: of Culturing and transcriptome profiling of progenitor-like colonies derived from adult mouse pancreas

description: is Table S8 presenting original HTS data sets for mRNAs and lncRNAs. (XLSX 12293 kb)
DOI: 10.6084/m9.figshare.c.3836830_d4
title: Additional file 4: Table S3. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: Functional annotation of differentially expressed genes identified by RNA-seq in Pepino hypocotyls 48Â h after waterlogging treatment. â  FCâ   represents fold change of the gene. (XLS 1012 kb)
DOI: 10.6084/m9.figshare.c.3836830_d3.v1
title: Additional file 3: Table S2. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: Functional annotation of differentially expressed genes identified by RNA-seq in Zaoer-N hypocotyls 48Â h after waterlogging treatment. â  FCâ   represents fold change of the gene. (XLS 852 kb)
DOI: 10.6084/m9.figshare.c.3836839_d2.v1
title: Additional file 11: of Culturing and transcriptome profiling of progenitor-like colonies derived from adult mouse pancreas

description: is Table S7 presenting original HTS data sets for miRNAs. (XLSX 172 kb)
DOI: 10.6084/m9.figshare.c.3836839_d2
title: Additional file 11: of Culturing and transcriptome profiling of progenitor-like colonies derived from adult mouse pancreas

description: is Table S7 presenting original HTS data sets for miRNAs. (XLSX 172 kb)
DOI: 10.6084/m9.figshare.c.3836830_d3
title: Additional file 3: Table S2. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: Functional annotation of differentially expressed genes identified by RNA-seq in Zaoer-N hypocotyls 48Â h after waterlogging treatment. â  FCâ   represents fold change of the gene. (XLS 852 kb)
DOI: 10.6084/m9.figshare.c.3836830_d1.v1
title: Additional file 1: Table S1. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: Detailed primer sequences for qPCR confirmation. (XLS 9 kb)
DOI: 10.6084/m9.figshare.c.3836830_d1
title: Additional file 1: Table S1. of Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

description: Detailed primer sequences for qPCR confirmation. (XLS 9 kb)
DOI: 10.15468/dl.pza5q9
title: Occurrence Download

description: A dataset containing 94323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes vexans (Meigen, 1830)",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2000"
 ]
}

 The dataset includes 94323 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036907-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3835822_d8
title: Additional file 8: Table S4. of Distribution and current infection status of Biomphalaria straminea in Hong Kong

description: Genetic distance table for concatenated cox1, ITS1-5.8S-ITS2 and 16S rDNA sequences used in Fig. 8. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3835822_d7.v1
title: Additional file 7: Table S3. of Distribution and current infection status of Biomphalaria straminea in Hong Kong

description: Genetic distance table for 16S rDNA sequences used in Fig. 7. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3835822_d8.v1
title: Additional file 8: Table S4. of Distribution and current infection status of Biomphalaria straminea in Hong Kong

description: Genetic distance table for concatenated cox1, ITS1-5.8S-ITS2 and 16S rDNA sequences used in Fig. 8. (XLS 37 kb)
DOI: 10.5281/zenodo.14502285
title: LINGUISTIC FEATURES OF THE SYMBOLISTS' CREATIVITY
DOI: 10.5281/zenodo.14502286
title: LINGUISTIC FEATURES OF THE SYMBOLISTS' CREATIVITY
DOI: 10.5281/zenodo.14502295
title: INDEPENDENT LEARNING: FACTORS INFLUENCING LANGUAGE STUDY.
DOI: 10.5281/zenodo.14502296
title: INDEPENDENT LEARNING: FACTORS INFLUENCING LANGUAGE STUDY.
DOI: 10.5281/zenodo.14502291
title: THE MAIN CONCEPTS OF PRAGMALINGUISTICS
DOI: 10.5281/zenodo.14502292
title: THE MAIN CONCEPTS OF PRAGMALINGUISTICS
DOI: 10.6084/m9.figshare.c.3831283_d19
title: Additional file 8: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Medicago repeat statistics. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d18
title: Additional file 7: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Medicago alignment statistics from Nucmer. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d17
title: Additional file 6: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Medicago assembly size statistics. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d16
title: Additional file 5: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice tandem repeat statistics. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d16.v1
title: Additional file 5: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice tandem repeat statistics. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d15.v1
title: Additional file 4: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice alignment statistics from Quast. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d15
title: Additional file 4: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice alignment statistics from Quast. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d14
title: Additional file 3: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice alignment statistics from ATAC. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d14.v1
title: Additional file 3: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice alignment statistics from ATAC. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d13.v1
title: Additional file 2: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice alignment statistics from Nucmer. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.c.3831283_d13
title: Additional file 2: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice alignment statistics from Nucmer. (XLSX 43Â kb)
DOI: 10.15468/dl.skzmf9
title: Occurrence Download

description: A dataset containing 659385 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "StateProvince is one of (chocó)"
 ]
}

 The dataset includes 659385 records from 482 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036906-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3831283_d11
title: Additional file 1: of Hybrid assembly with long and short reads improves discovery of gene family expansions

description: Rice assembly size statistics. (XLSX 42Â kb)
DOI: 10.15468/dl.qtr7cp
title: Occurrence Download

description: A dataset containing 1150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucosiidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1150 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036910-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6tc2e
title: Occurrence Download

description: A dataset containing 233 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Glaucidium brasilianum cactorum van Rossem, 1937"
 ]
}

 The dataset includes 233 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036912-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3829105_d2
title: Additional file 2: of Short DNA sequence patterns accurately identify broadly active human enhancers

description: Supplementary table S1. (TXT 54 kb)
DOI: 10.6084/m9.figshare.c.3829105_d2.v1
title: Additional file 2: of Short DNA sequence patterns accurately identify broadly active human enhancers

description: Supplementary table S1. (TXT 54 kb)
DOI: 10.6084/m9.figshare.c.3823171_d11.v1
title: Additional file 6: Table S10, 11 and 12. of Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton

description: The CESA/CSL gene count data from HTseq-count in cotton. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3823147_d1
title: Additional file 1: Table S1. of Evaluation of the relationship between MARCO and CD36 single-nucleotide polymorphisms and susceptibility to pulmonary tuberculosis in a Chinese Han population

description: PTB patients information. Some laboratory examination results and clinical findings were listed. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d6
title: Additional file 6: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Results lists for network communities of correlated genes and metabolic masses. The graph structure of each network community shown in Fig. 5b and c is given in dot format readable by Graphviz ( http://www.graphviz.org ), and significantly enriched GO terms for each community are provided as lists. (XLSX 1518Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d6.v1
title: Additional file 6: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Results lists for network communities of correlated genes and metabolic masses. The graph structure of each network community shown in Fig. 5b and c is given in dot format readable by Graphviz ( http://www.graphviz.org ), and significantly enriched GO terms for each community are provided as lists. (XLSX 1518Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d5.v1
title: Additional file 5: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Correlations of targeted metabolites from GC-MS dataset used for evaluation. Pearson correlations between GC-MS-measured metabolites and variables of the main study datasets are given. The first sheet contains correlations of the sucrose inversion variables from Fig. 5a. The second sheet contains correlations between GC-MS metabolites and the network genes from Fig. 5b, including metabolite-gene, gene-gene and metabolite-metabolite correlations. The third sheet contains correlations between GC-MS metabolites and FT-ICR-MS mass variables. (XLSX 15496Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d5
title: Additional file 5: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Correlations of targeted metabolites from GC-MS dataset used for evaluation. Pearson correlations between GC-MS-measured metabolites and variables of the main study datasets are given. The first sheet contains correlations of the sucrose inversion variables from Fig. 5a. The second sheet contains correlations between GC-MS metabolites and the network genes from Fig. 5b, including metabolite-gene, gene-gene and metabolite-metabolite correlations. The third sheet contains correlations between GC-MS metabolites and FT-ICR-MS mass variables. (XLSX 15496Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d4.v1
title: Additional file 4: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Result lists for air humidity analysis. Mass and gene lists as well as enriched GO terms are given for the Venn groups in Fig. 3a and b, distinguishing low air humidity-specific variables (LrH only), high air humidity-specific variables (HrH only) and overlapping variables (overlap) for the heat stress setting (H) or the combined drought-heat stress setting (DH). Up-regulated and down-regulated subgroups are shown in separate sheets. (XLSX 409Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d4
title: Additional file 4: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Result lists for air humidity analysis. Mass and gene lists as well as enriched GO terms are given for the Venn groups in Fig. 3a and b, distinguishing low air humidity-specific variables (LrH only), high air humidity-specific variables (HrH only) and overlapping variables (overlap) for the heat stress setting (H) or the combined drought-heat stress setting (DH). Up-regulated and down-regulated subgroups are shown in separate sheets. (XLSX 409Â kb)
DOI: 10.6084/m9.figshare.c.3823051_d3.v1
title: Additional file 3: of Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

description: Result lists of condition-specific gene expression and metabolomic mass levels estimated by linear modeling across the whole dataset. Tables show mean log2 gene expression values and log2metabolomic mass levels for each of the six environmental conditions: control, drought (D), heat with low relative air humidity (H_LrH), heat with high relative air humidity (H_HrH), drought stress combined with low air humidity heat stress (DH_LrH) and drought stress combined with high air humidity heat stress (DH_HrH). Values of all individual samples are available in the processed data file deposited at the ArrayExpress and MetaboLights databases, respectively (Availability of data and materials). (XLSX 2264Â kb)