cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15322324
title: A cfChIP-seq liquid biopsy for the diagnosis of autoimmune hepatitis

description: Autoimmune hepatitis (AIH) is a chronic inflammatory liver disorder characterized by immune-mediated hepatocyte injury, associated with significant morbidity and mortality. Patients undergo liver biopsy to confirm diagnosis and affirm subsequent remission. Although liquid biopsies have emerged as promising non-invasive alternatives in oncology, their applicability in liver diseases remains largely unexplored. Here, we use plasma chromatin immunoprecipitation and sequencing (cfChIP-seq) to analyze cell-free nucleosomes carrying an active histone modification, which reports on gene transcription in the dying cells. Comparing cfChIP-seq profiles of plasma samples from AIH patients (46 pediatric and 34 adult) with those of a control group (79/10 adult and pediatric patients, respectively), we identify immune-related transcriptional processes activated in the hepatocytes of AIH patients and verify these using RNA-seq on matched liver biopsies. We develop a classifier that distinguishes plasma cfChIP-seq profiles of AIH from other conditions involving liver injury. This classifier achieves a high level of performance, with an area under the ROC curve (AUC) of 0.92.  Our work demonstrates the potential of plasma cfChIP-seq as a non-invasive diagnostic tool for AIH, offering opportunities to reduce the need for liver biopsies, enhance diagnostic precision, and advance our understanding of AIH pathogenesis.
description: cfChIP-seq_AIH_geneCounts.csv contains the table of Genes X plasma cfChIP-seq samples.  The value in cfChIP-seq_AIH_geneCounts.csv[i,j] is the normalized promoter coverage of gene j in sample i. 

Detailed information can be found in the manuscripts methods.
DOI: 10.21233/c3ps-w968
title: Lower Lake pollen dataset

description: Raw data for the Lower Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/8sy1-mp41
title: Capatana pollen dataset

description: Raw data for the Capatana pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/nh57-sh95
title: The Noads Bog pollen dataset

description: Raw data for the The Noads Bog pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wyxz-v468
title: Grand Traverse Bay testate amoebae surface sample dataset

description: Raw data for the Grand Traverse Bay testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bdx0-p936
title: Pike Lake water chemistry dataset

description: Raw data for the Pike Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.34csxf
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Tripsacum maizar Hern.-Xol. & Randolph"
 ]
}

 The dataset includes 149 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023610-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/rz58-ds51
title: LDDsite261 ostracode surface sample dataset

description: Raw data for the LDDsite261 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wngk-gx28
title: LDDsite5288 water chemistry dataset

description: Raw data for the LDDsite5288 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.36m7hk
title: Occurrence Download

description: A dataset containing 4735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Bibio johannis (Linnaeus, 1767)",
 "Year 1973-2025"
 ]
}

 The dataset includes 4735 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023611-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/32ra-x270
title: Five Island Lake water chemistry dataset

description: Raw data for the Five Island Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/b9fn-0029
title: Brown Lake water chemistry dataset

description: Raw data for the Brown Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1aq4-d143
title: LDDsite538 ostracode surface sample dataset

description: Raw data for the LDDsite538 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.h6rb6n
title: Occurrence Download

description: A dataset containing 1775310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON (((-105.1974 21.102, -105.3414 21.16368, -105.5729 21.1813, -105.8847 21.1769, -106.1917 21.05351, -106.3429 20.91458, -106.4681 20.65402, -106.5484 20.44613, -106.52 20.27784, -106.3287 19.98068, -106.0217 19.71409, -105.7099 19.7052, -105.384 19.74522, -105.0226 19.96737, -105.1974 21.102)), ((-115.4715 20.01176, -115.4621 17.65133, -110.0912 17.66933, -110.0817 20.01176, -115.4715 20.01176)), ((-112.1106 25.76592, -112.2476 25.68507, -112.3539 25.49121, -112.557 24.58175, -112.5617 24.41411, -112.4365 24.17731, -112.257 24.06522, -112.0067 23.96382, -111.787 23.94871, -111.3949 23.95518, -111.1564 23.97892, -111.0407 24.24194, -112.061 25.75103, -112.1106 25.76592)), ((-110.7123 24.77705, -110.7525 24.69124, -110.7525 24.54308, -110.7147 24.4012, -110.632 24.24409, -110.4714 24.13205, -110.3793 24.06522, -109.5999 23.31472, -109.8762 22.99984, -109.9943 22.87803, -109.9707 22.74087, -109.8668 22.72998, -109.7865 22.7474, -109.4606 22.81709, -109.2787 22.89544, -109.1937 23.04114, -109.0661 23.35809, -109.1653 23.55742, -109.2409 23.79104, -109.4039 24.10619, -109.8503 24.44851, -109.9896 24.57316, -110.1266 24.90136, -110.2164 24.98274, -110.4148 25.10044, -110.4738 25.11541, -110.5187 25.0876, -110.5328 25.05979, -110.5399 24.98703, -110.514 24.93349, -110.5069 24.87351, -110.5281 24.81993, -110.6344 24.81779, -110.7123 24.77705)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 1775310 records from 789 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023604-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29119433
title: Gene predictions for <i>Flaccisagitta enflata</i>

description: Gene predictions for <i>Flaccisagitta enflata</i> generated using Funannotate
DOI: 10.6084/m9.figshare.29119433.v1
title: Gene predictions for <i>Flaccisagitta enflata</i>

description: Gene predictions for <i>Flaccisagitta enflata</i> generated using Funannotate
DOI: 10.15468/dl.j9zb5f
title: Occurrence Download

description: A dataset containing 52067 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus pyrenaica"
 ]
}

 The dataset includes 52067 records from 573 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084015-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytd2bs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphelinoidea anatolica",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084048-250717081556266/datasets/export for details.
DOI: 10.15468/dl.r9nycm
title: Occurrence Download

description: A dataset containing 1171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "GadmGid is one of (BRA.11_1, BRA.12_1)",
 "TaxonKey is Alismataceae"
 ]
}

 The dataset includes 1171 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076894-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x54g72
title: Occurrence Download

description: A dataset containing 11566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plumbago auriculata Lam.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11566 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076892-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tftu2n
title: Occurrence Download

description: A dataset containing 6382 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Thymus pannonicus All.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6382 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076893-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kjhav3
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plumbago indica L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 146 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076896-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f342em
title: Occurrence Download

description: A dataset containing 4735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Limonium sinuatum (L.) Mill.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4735 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076897-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r59qe5
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Limonium otolepis (Schrenk) Kuntze)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 122 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076899-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqzfx9
title: Occurrence Download

description: A dataset containing 2585 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haemaphysalis longicornis Neumann, 1901"
 ]
}

 The dataset includes 2585 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076901-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhkffm
title: Occurrence Download

description: A dataset containing 34843 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Limonium vulgare Mill.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34843 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076900-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9g4nk
title: Occurrence Download

description: A dataset containing 920 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dermacentor andersoni Stiles, 1908"
 ]
}

 The dataset includes 920 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076902-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d5tfdj
title: Occurrence Download

description: A dataset listing the 58 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Brazil",
 "GadmGid is one of (BRA.11_1, BRA.12_1)",
 "TaxonKey is Alismataceae"
 ]
}

 The dataset's 58 records were derived from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076898-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnwtud
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Grias cauliflora L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 284 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076903-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e205401v2
title: Silent Covenants and Structural Barriers: State Standards Committees and the Maintenance of Race-Evasive Social Studies Standards

description: In this qualitative study,
researchers used critical race theory to examine the experiences of social
studies standards committee members in 18 states and the District of Columbia.
They found that while many participants articulated goals of increasing the
teaching of race and racism in their state’s social studies standards, at least
in part, numerous silent covenants and structural barriers existed to maintain
the status quo through race-evasive standards. A smaller group of participants
generally avoided advocating for race and racism topics altogether due to their
perceived controversial or political status, while others did not mention race
or racism as a priority. Recommendations are made for both the policy and
practice related to state standards creation, and questions are raised about
the ability of social studies standards to foster racially-just social studies
curriculum.<br>
DOI: 10.3886/e205401v1
title: Silent Covenants and Structural Barriers: State Standards Committees and the Maintenance of Race-Evasive Social Studies Standards

description: In this qualitative study,
researchers used critical race theory to examine the experiences of social
studies standards committee members in 18 states and the District of Columbia.
They found that while many participants articulated goals of increasing the
teaching of race and racism in their state’s social studies standards, at least
in part, numerous silent covenants and structural barriers existed to maintain
the status quo through race-evasive standards. A smaller group of participants
generally avoided advocating for race and racism topics altogether due to their
perceived controversial or political status, while others did not mention race
or racism as a priority. Recommendations are made for both the policy and
practice related to state standards creation, and questions are raised about
the ability of social studies standards to foster racially-just social studies
curriculum. 





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DOI: 10.3886/e205401
title: Silent Covenants and Structural Barriers: State Standards Committees and the Maintenance of Race-Evasive Social Studies Standards

description: In this qualitative study,
researchers used critical race theory to examine the experiences of social
studies standards committee members in 18 states and the District of Columbia.
They found that while many participants articulated goals of increasing the
teaching of race and racism in their state’s social studies standards, at least
in part, numerous silent covenants and structural barriers existed to maintain
the status quo through race-evasive standards. A smaller group of participants
generally avoided advocating for race and racism topics altogether due to their
perceived controversial or political status, while others did not mention race
or racism as a priority. Recommendations are made for both the policy and
practice related to state standards creation, and questions are raised about
the ability of social studies standards to foster racially-just social studies
curriculum.<br>
DOI: 10.3886/e205401v3
title: Silent Covenants and Structural Barriers: State Standards Committees and the Maintenance of Race-Evasive Social Studies Standards

description: In this qualitative study,
researchers used critical race theory to examine the experiences of social
studies standards committee members in 18 states and the District of Columbia.
They found that while many participants articulated goals of increasing the
teaching of race and racism in their state’s social studies standards, at least
in part, numerous silent covenants and structural barriers existed to maintain
the status quo through race-evasive standards. A smaller group of participants
generally avoided advocating for race and racism topics altogether due to their
perceived controversial or political status, while others did not mention race
or racism as a priority. Recommendations are made for both the policy and
practice related to state standards creation, and questions are raised about
the ability of social studies standards to foster racially-just social studies
curriculum.<br>
DOI: 10.15468/dl.g76mad
title: Occurrence Download

description: A dataset containing 934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lecythis pisonis Cambess.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 934 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076904-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3uawq
title: Occurrence Download

description: A dataset containing 1690 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dermacentor occidentalis Marx, 1892"
 ]
}

 The dataset includes 1690 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076905-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucqrua
title: Occurrence Download

description: A dataset containing 3572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Perciformes",
 "Year 1980-2024"
 ]
}

 The dataset includes 3572 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076906-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gx4jp
title: Occurrence Download

description: A dataset containing 2242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Couroupita guianensis Aubl.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2242 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076907-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y6khq
title: Occurrence Download

description: A dataset containing 328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zoarces gillii Jordan & Starks, 1905"
 ]
}

 The dataset includes 328 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076908-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.