cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2qnwhs
title: CCDC 2522516: Experimental Crystal Structure Determination

description: Related Article: Yining Lv|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21233/n3gh76
title: Lake Ellensmere pollen dataset

description: Raw data for the Lake Ellensmere pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.tdyyrc
title: Occurrence Download

description: A dataset containing 4838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.6.36_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus"
 ]
}

 The dataset includes 4838 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016136-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dg7ra9
title: Occurrence Download

description: A dataset containing 594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neosuthora davidiana)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 594 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016138-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3bq4w
title: Ely Lake pollen dataset

description: Raw data for the Ely Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.5fv2ay
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Percina aurolineata)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016137-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3713p
title: Emerald Lake pollen dataset

description: Raw data for the Emerald Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.zpv639
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016139-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3370c
title: Encantado pollen dataset

description: Raw data for the Encantado pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n3cg89
title: Enmyvaam River, 2.5-3 m terrace pollen dataset

description: Raw data for the Enmyvaam River, 2.5-3 m terrace pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n37p6c
title: Enmyvaam River, 7-9 m Terrace pollen dataset

description: Raw data for the Enmyvaam River, 7-9 m Terrace pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.yeeqkx
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eichhornia crassipes",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 46 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016141-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3403d
title: Enmynveem River pollen dataset

description: Raw data for the Enmynveem River pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n3061g
title: Ennadai Lake, 1972 Site pollen dataset

description: Raw data for the Ennadai Lake, 1972 Site pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.nbmtbc
title: Occurrence Download

description: A dataset containing 4031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neothraupis fasciata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 4031 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016142-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3muuf
title: Occurrence Download

description: A dataset containing 4150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Betula humilis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4150 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016143-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3fh88
title: Ennadai Lake pollen dataset

description: Raw data for the Ennadai Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.4skgva
title: Occurrence Download

description: A dataset containing 1066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Strix occidentalis)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 1066 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016144-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kkuud
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Strix occidentalis)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016145-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n39t37
title: Entarnoye Peat Exposure pollen dataset

description: Raw data for the Entarnoye Peat Exposure pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n36120
title: Lake Erie pollen dataset

description: Raw data for the Lake Erie pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n3298s
title: Ernst Brother's Pit pollen dataset

description: Raw data for the Ernst Brother's Pit pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/m5dr-hs85
title: East Sooke Fen pollen dataset

description: Raw data for the East Sooke Fen pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/b4r3-b913
title: Lac à la Fourche loss-on-ignition dataset

description: Raw data for the Lac à la Fourche loss-on-ignition dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.cndpep
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Strix occidentalis)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 115 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016146-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/f915-bn91
title: Lac à la Fourche pollen dataset

description: Raw data for the Lac à la Fourche pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n3j99h
title: Etivlik Lake pollen dataset

description: Raw data for the Etivlik Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.rzrhqv
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Paraguay",
 "DatasetKey is EOD – eBird Observation Dataset",
 "IucnRedListCategory is EN",
 "PublishingCountry is Paraguay",
 "TaxonKey is Amazona vinacea"
 ]
}

 The dataset includes 94 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016148-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n3dh66
title: East Twin Lake loss-on-ignition dataset

description: Raw data for the East Twin Lake loss-on-ignition dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.hxug5m
title: Occurrence Download

description: A dataset containing 1450 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Etrumeus teres"
 ]
}

 The dataset includes 1450 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016147-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/n38t5p
title: East Twin Lake pollen dataset

description: Raw data for the East Twin Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.xxag6n
title: Occurrence Download

description: A dataset containing 10407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neotis ludwigii)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 10407 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016149-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28661705
title: Genespace synteny analysis

description: genespace_genomes contains translated cds .faa and genomic gff annotation files for three taxa (B. pensylvanicus, B. affinis, B. huntii) needed for the R code below. Results can be replicated by running the R code for GENESPACE (see https://github.com/jtlovell/GENESPACE for software and other requirements).<b>R-code for running Genespace:</b>library(GENESPACE)<br>genomeRepo&lt;-file.path("genespace/genespace_genomes")workdir&lt;-file.path("genespace/genespace_working")<br>parsedPaths &lt;- parse_annotations( rawGenomeRepo = genomeRepo, genomeDirs = c("affinis", "huntii", "pens"), genomeIDs = c("affinis", "huntii", "pens"), presets = "ncbi",troubleShoot = TRUE, genespaceWd = workdir)<br><br>gpar &lt;- init_genespace( wd = workdir, <br> path2mcscanx ="GenomeSoftware/MCScanX-master")out &lt;- run_genespace(gsParam = gpar) <br>
DOI: 10.6084/m9.figshare.28661705.v1
title: Genespace synteny analysis

description: genespace_genomes contains translated cds .faa and genomic gff annotation files for three taxa (B. pensylvanicus, B. affinis, B. huntii) needed for the R code below. Results can be replicated by running the R code for GENESPACE (see https://github.com/jtlovell/GENESPACE for software and other requirements).<b>R-code for running Genespace:</b>library(GENESPACE)<br>genomeRepo&lt;-file.path("genespace/genespace_genomes")workdir&lt;-file.path("genespace/genespace_working")<br>parsedPaths &lt;- parse_annotations( rawGenomeRepo = genomeRepo, genomeDirs = c("affinis", "huntii", "pens"), genomeIDs = c("affinis", "huntii", "pens"), presets = "ncbi",troubleShoot = TRUE, genespaceWd = workdir)<br><br>gpar &lt;- init_genespace( wd = workdir, <br> path2mcscanx ="GenomeSoftware/MCScanX-master")out &lt;- run_genespace(gsParam = gpar) <br>
DOI: 10.21233/n3512p
title: Kinnelon pollen surface sample dataset

description: Raw data for the Kinnelon pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/n31b0s
title: Excelsior Basin pollen dataset

description: Raw data for the Excelsior Basin pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.qr5xhd
title: Occurrence Download

description: A dataset containing 32896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-115.1647 37.65684,-115.378 37.67373,-115.4271 37.50599,-115.4504 37.61634,-115.6779 37.54731,-115.5296 37.24377,-115.7473 37.02409,-116.0185 37.27166,-115.928 36.99763,-115.9906 36.93546,-116.6995 36.9972,-116.8065 37.28315,-116.9092 37.19524,-117.0246 37.43963,-117.1808 37.52838,-117.879 37.40723,-117.9617 37.28309,-117.8731 37.28723,-117.7944 37.07732,-117.9544 37.00084,-117.9515 36.88746,-117.8227 36.66252,-117.5905 36.53221,-117.702 36.54888,-117.7001 36.33985,-117.8002 36.52408,-117.9937 36.60588,-118.0845 36.84138,-118.2462 36.70385,-118.0401 36.46577,-117.8747 35.6612,-118.1077 35.52994,-118.0064 35.30001,-118.067 35.21965,-118.7917 34.78093,-118.4387 34.71956,-117.4643 34.26589,-117.1769 34.41801,-116.4889 34.32896,-116.5167 34.16457,-116.3997 34.13626,-116.4803 34.10575,-116.3148 34.09686,-115.9023 33.67817,-115.4918 33.71225,-115.3721 33.95609,-115.2841 33.87187,-115.5649 34.39096,-115.3579 34.50802,-115.2336 34.50913,-115.1734 34.281,-115.0287 34.49015,-114.9045 34.48742,-114.8483 34.31828,-114.0637 34.52534,-113.7549 34.46349,-113.6928 34.6298,-113.9285 34.76649,-114.0439 35.11463,-113.8177 35.22367,-113.8187 35.40141,-113.7145 35.4153,-113.8815 35.71407,-114.0844 35.81357,-113.816 36.22755,-113.7161 36.52703,-113.7669 36.72443,-113.3502 36.84576,-113.2794 37.29557,-113.8386 37.20913,-113.9632 37.38364,-114.3332 37.26329,-114.575 37.38097,-114.8029 37.22457,-114.8184 37.32927,-114.9423 37.28012,-115.1626 37.47778,-115.1647 37.65684))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Geothlypis trichas"
 ]
}

 The dataset includes 32896 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016151-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28661591
title: Repeat Modeler analysis for B. pensylvanicus

description: Repeatmasker/RepeatModeler Analysis was performed using Singularity dfam-tetools-latest.sif (from https://github.com/Dfam-consortium/TETools).<b>The repeat database was built with Repeatmasker:</b>BuildDatabase -name pens Bombus_pensylvanicus.curatedScaff.clean_sort_rename_nuc.fastaRepeatModeler -database pens -threads 20 -LTRStruct<b>The Hymenoptera dfam database was fetched with</b>wget "https://www.dfam.org/releases/current/families/FamDB/dfam38-1_full.0.h5.gz"wget "https://www.dfam.org/releases/current/families/FamDB/dfam38-1_full.7.h5.gz"wget "https://www.dfam.org/releases/current/families/FamDB/README.txt"famdb.py -i Libraries families --format fasta_name --include-class-in-name --ancestors --descendants 7458 &gt; Apidae-rm.fa<b>The Apidae repeat library was merged with the B pensylvanicus library output (pens_curated-families.fa) to create the </b><b>Apidae_pens-families-rm.fa</b><b> repeatmasker library.</b><b>RepeatMasker was run:</b>RepeatMasker -lib Apidae_pens-families-rm.fa -pa 16 -gff Bombus_pensylvanicus.curatedScaff.clean_sort_rename_nuc.fasta<b>Subdirectory pens_repeatmodeler_figshare</b> contains repeatmodeler libraries, outputs from repeatmasker (masked genome fasta, gff, summary count tables, etc) and logs.<b>Subdirectory OtherSp </b>contains output summaries (.tbl) files for repeats in other Bombus species and their relevant species-specific RepeatModeler + Apidae dfam custom repeat libraries (.fa). <b>Subdirectory RepeatModelerLibsOnly </b>contains output summaries (.tbl) files for repeats for B. pensylvanicus and other Bombus species using ONLY their relevant species-specific RepeatModeler output as the custom repeat library (.fa) (without the Apidae dfam)<br>