cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vnsb8x
title: Occurrence Download

description: A dataset containing 999 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caleana minor R.Br."
 ]
}

 The dataset includes 999 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067611-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.625x47
title: Occurrence Download

description: A dataset containing 1237 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paspalum blodgettii Chapm."
 ]
}

 The dataset includes 1237 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061587-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dln9dm
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyla siopela Duellman, 1968"
 ]
}

 The dataset includes 112 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002509-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2p94d
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-102.76385 18.83489,-102.78908 18.83489,-102.80419 18.83326,-102.83653 18.77945,-102.84051 18.72682,-102.65866 18.37684,-102.40872 18.44094,-102.35173 18.54427,-102.53122 18.73172,-102.76385 18.83489))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Reptilia"
 ]
}

 The dataset includes 76 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0410936-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhe7yr
title: Occurrence Download

description: A dataset containing 6328 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macrosiphum euphorbiae (Thomas, 1878)"
 ]
}

 The dataset includes 6328 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003560-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uiek8d
title: Occurrence Download

description: A dataset containing 7112112 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is NMNH Extant Specimen Records (USNM, US)"
 ]
}

 The dataset includes 7112112 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002509-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mbzvz
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventarios de flora y fauna en bosques de niebla del municipio de Chámeza, Casanare"
 ]
}

 The dataset includes 281 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053669-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwfvnp
title: Occurrence Download

description: A dataset containing 10234 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is France",
 "Country is Germany",
 "Country is Sweden"
 ]
 },
 "TaxonKey is Agrotis exclamationis (Linnaeus, 1758)",
 "Year 1980-2021"
 ]
}

 The dataset includes 10234 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184801-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyixnw
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Goodyera R. Br. ex Ait. f."
 ]
}

 The dataset includes 67 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076589-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.slpnjh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Juniperus jarkendensis Kom.",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028163-191105090559680/datasets/export for details.
DOI: 10.15468/dl.y77qdy
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cleistopholis glauca Pierre ex Engl. & Diels"
 ]
}

 The dataset includes 277 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035157-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4752p
title: Occurrence Download

description: A dataset containing 4098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agalychnis Cope, 1864"
 ]
}

 The dataset includes 4098 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080966-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9e9271
title: Occurrence Download

description: A dataset containing 5090094 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Squamata"
 ]
}

 The dataset includes 5090094 records from 1342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003914-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vem7dx
title: Occurrence Download

description: A dataset containing 7403 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Spain",
 "Country is France",
 "Country is Germany",
 "Country is Sweden"
 ]
 },
 "TaxonKey is Peribatodes rhomboidaria (Denis & Schiffermüller), 1775",
 "Year 1980-2021"
 ]
}

 The dataset includes 7403 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184812-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfd4nq
title: Occurrence Download

description: A dataset containing 2726428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pitangus sulphuratus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2726428 records from 672 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013209-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13903108
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.17744835
title: AFB1 and asthma
DOI: 10.6084/m9.figshare.30736481
title: RNA-seq data from human umbilical vein endothelial cells (HUVECs)

description: This dataset contains bulk RNA-seq data generated from primary human umbilical vein endothelial cells (HUVECs) from Homo sapiens. Cells were allocated to three experimental groups: a control group (CK), a model group exposed to oxidised low-density lipoprotein (ox-LDL), and a treatment group (ox-LDLx). Each group contains three independent biological replicates, giving a total of nine RNA-seq libraries.<br>Total RNA was extracted from cultured HUVECs, and sequencing libraries were prepared with an approximate insert size of 380 bp. Libraries were sequenced on an Illumina NovaSeq platform in paired-end mode (2 × 150 bp), yielding around 15 Gb of clean data per sample after quality filtering. Reads were aligned to the human reference genome (GRCh38) and gene-level raw read counts were generated using standard tools. Gene-level expression values are provided as both raw counts and FPKM.<br>The following files are included in this figshare record:<br>1) HUVEC_RNAseq_counts_FPKM_with_annotation.xlsx- Gene-level expression matrix with functional annotation.- Rows correspond to genes. Columns include Ensembl gene identifiers, raw read counts and FPKM values for each of the nine samples (Control1–3, Model1–3, Treat1–3), together with gene name, description and external database identifiers (for example GO, KEGG and eggNOG, where available). Raw counts are suitable for downstream differential expression analyses, whereas FPKM values are provided for exploratory analyses and visualisation.<br>2) HUVEC_sample_metadata.tsv- Minimal sample-level metadata for the nine RNA-seq libraries.- Each row represents one sample. Columns include the sample identifier (matching the expression matrix), experimental group (Control, Model, Treatment), biological replicate number, cell type, species, treatment label (CK, ox-LDL, ox-LDLx), library identifier, approximate library insert size, sequencing platform and read type.<br>3) README_HUVEC_RNAseq.txt- A detailed description of the experimental design, sequencing and bioinformatic processing, together with guidance on file structure, typical usage and citation.<br>All experiments involving HUVECs were conducted under institutional ethics approval. The dataset does not contain any personally identifiable information and consists solely of aggregated gene expression measurements from cultured human endothelial cells.<br>Researchers can use the raw count columns for differential expression analysis with tools such as DESeq2 or edgeR, and the associated sample metadata to define the experimental design. The FPKM columns are useful for clustering, visualisation and exploratory transcriptomic profiling.<br>
DOI: 10.6084/m9.figshare.30736481.v1
title: RNA-seq data from human umbilical vein endothelial cells (HUVECs)

description: This dataset contains bulk RNA-seq data generated from primary human umbilical vein endothelial cells (HUVECs) from Homo sapiens. Cells were allocated to three experimental groups: a control group (CK), a model group exposed to oxidised low-density lipoprotein (ox-LDL), and a treatment group (ox-LDLx). Each group contains three independent biological replicates, giving a total of nine RNA-seq libraries.<br>Total RNA was extracted from cultured HUVECs, and sequencing libraries were prepared with an approximate insert size of 380 bp. Libraries were sequenced on an Illumina NovaSeq platform in paired-end mode (2 × 150 bp), yielding around 15 Gb of clean data per sample after quality filtering. Reads were aligned to the human reference genome (GRCh38) and gene-level raw read counts were generated using standard tools. Gene-level expression values are provided as both raw counts and FPKM.<br>The following files are included in this figshare record:<br>1) HUVEC_RNAseq_counts_FPKM_with_annotation.xlsx- Gene-level expression matrix with functional annotation.- Rows correspond to genes. Columns include Ensembl gene identifiers, raw read counts and FPKM values for each of the nine samples (Control1–3, Model1–3, Treat1–3), together with gene name, description and external database identifiers (for example GO, KEGG and eggNOG, where available). Raw counts are suitable for downstream differential expression analyses, whereas FPKM values are provided for exploratory analyses and visualisation.<br>2) HUVEC_sample_metadata.tsv- Minimal sample-level metadata for the nine RNA-seq libraries.- Each row represents one sample. Columns include the sample identifier (matching the expression matrix), experimental group (Control, Model, Treatment), biological replicate number, cell type, species, treatment label (CK, ox-LDL, ox-LDLx), library identifier, approximate library insert size, sequencing platform and read type.<br>3) README_HUVEC_RNAseq.txt- A detailed description of the experimental design, sequencing and bioinformatic processing, together with guidance on file structure, typical usage and citation.<br>All experiments involving HUVECs were conducted under institutional ethics approval. The dataset does not contain any personally identifiable information and consists solely of aggregated gene expression measurements from cultured human endothelial cells.<br>Researchers can use the raw count columns for differential expression analysis with tools such as DESeq2 or edgeR, and the associated sample metadata to define the experimental design. The FPKM columns are useful for clustering, visualisation and exploratory transcriptomic profiling.<br>
DOI: 10.7910/dvn/pcngsk
title: PDB:1AFV, Crystal structure of HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3 (312K, 39°C, 100 ns)

description: PDB:1AFV, Crystal structure of HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3 (312K, 39°C, 100 ns): random seed #1. PDBs obtained at every 50 ns.
DOI: 10.6084/m9.figshare.30736502.v1
title: The complete genome sequence of the ghost bat, <i>Macroderma gigas</i>

description: The ghost bat (<i>Macroderma gigas)</i> is a large carnivorous bat inhabiting monsoonal tropics and arid habitat across northern Australia and is currently listed as Vulnerable on the IUCN Red List. We sequenced long-reads of DNA using PacBio HiFi to generate a 2.00 Gb genome consisting of 313 scaffolds, and accompany this with short-read transcriptomes from five tissues to aid in genome annotation using Fgenesh++. The generation of a reference genome will assist in conservation of the species, particularly in relation to understanding the genomic basis of arid adaptation and ongoing development of non-invasive genetic monitoring techniques.
DOI: 10.6084/m9.figshare.30736502
title: The complete genome sequence of the ghost bat, <i>Macroderma gigas</i>

description: The ghost bat (<i>Macroderma gigas)</i> is a large carnivorous bat inhabiting monsoonal tropics and arid habitat across northern Australia and is currently listed as Vulnerable on the IUCN Red List. We sequenced long-reads of DNA using PacBio HiFi to generate a 2.00 Gb genome consisting of 313 scaffolds, and accompany this with short-read transcriptomes from five tissues to aid in genome annotation using Fgenesh++. The generation of a reference genome will assist in conservation of the species, particularly in relation to understanding the genomic basis of arid adaptation and ongoing development of non-invasive genetic monitoring techniques.
DOI: 10.7910/dvn/ykswtq
title: PDB:1AFV, Crystal structure of HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3 (313K, 40°C, 100 ns)

description: PDB:1AFV, Crystal structure of HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3 (313K, 40°C, 100 ns): random seed #1. PDBs obtained at every 50 ns.
DOI: 10.5281/zenodo.17535646
title: GPP Xenium
DOI: 10.5281/zenodo.17535647
title: GPP Xenium
DOI: 10.15468/dl.jaqzcg
title: Occurrence Download

description: A dataset containing 15471 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Casiornis rufus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15471 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013218-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/p2nj6
title: Permutation Distancing Test

description: We developed and validated the Permutation Distancing Test to analyze longitudinal dependent single-case observational AB-phase design data without linear trends. In this project, you will find the Monte Carlo simulation data used to validate the test.
DOI: 10.17605/osf.io/pb3af
title: Dart-QDa Data

description: Full scan data and calibration curve data for Amphetamine, Ketamine, Cocaine, THC, Leucine, Phenylalanine, HMTD, PETN, TNT, Tetryl and RDX. Collected using a Waters QDa mass spectrometer coupled with an Direct analysis in real time (DART) ion source. The DART was operated with helium, nitrogen and argon as the ionisaiton gas.
DOI: 10.15468/dl.8xfsqj
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cypripedium amesianum"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013220-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17744907
title: Janus Mn single atoms for triggering efficient photothermal catalytic CO2 methanation through spin polarization effect

description: The raw data of "Janus Mn single atoms for triggering efficient photothermal catalytic CO2 methanation through spin polarization effect".
DOI: 10.5281/zenodo.17744908
title: Janus Mn single atoms for triggering efficient photothermal catalytic CO2 methanation through spin polarization effect

description: The raw data of "Janus Mn single atoms for triggering efficient photothermal catalytic CO2 methanation through spin polarization effect".
DOI: 10.15468/dl.eh4ghs
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cypripedium froschii"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013222-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17744942
title: FIShBOT Archive 2025-11-28

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.5281/zenodo.17744943
title: FIShBOT Archive 2025-11-28

description: This dataset is a static snapshot of the FIShBOT data product before new data are aggregated. This version of fishbot is archived for reproducibility and is not updated. The data are aggregated from the FIShBOT system, which collects and processes oceanographic from fishery dependent and independent sources.
DOI: 10.21227/y1bg-6014
title: "The data of \"Following the Diagnostic Trace: Visual Cognition-guided Cooperative Network for Chest X-Ray Diagnosis\""

description: "The SIIM-ACR dataset includes 1,170 chest X-ray images, with corresponding gaze data; 268 of these images are of pneumothorax. The EGD-CXR dataset comprises 1,083 chest X-ray images sourced from the MIMIC-CXR dataset, categorized into three classes: normal, congestive heart failure, and pneumonia. Each image includes gaze data. The TB-Mouse dataset contains 1,000 training images and corresponding mouse trajectories, collected as radiologists read the images, along with 2,200 test images."
DOI: 10.21227/43fg-m343
title: "The data of \"Following the Diagnostic Trace: Visual Cognition-guided Cooperative Network for Chest X-Ray Diagnosis\""

description: "The SIIM-ACR dataset includes 1,170 chest X-ray images, with corresponding gaze data; 268 of these images are of pneumothorax. The EGD-CXR dataset comprises 1,083 chest X-ray images sourced from the MIMIC-CXR dataset, categorized into three classes: normal, congestive heart failure, and pneumonia. Each image includes gaze data. The TB-Mouse dataset contains 1,000 training images and corresponding mouse trajectories, collected as radiologists read the images, along with 2,200 test images."
DOI: 10.15468/dl.pyu8s3
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Cleisostoma fuerstenbergianum"
 ]
}

 The dataset includes 95 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013226-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnqwx7
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "TaxonKey is Cleisostoma paniculatum"
 ]
}

 The dataset includes 287 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013228-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55bmx6
title: Occurrence Download

description: A dataset containing 56647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhincodontidae, Rhinidae, Rhinobatidae, Rhinochimaeridae, Rhinopteridae, Rhombosoleidae, Rhyacichthyidae, Ritidae, Rivulidae, Rondeletiidae, Saccopharyngidae, Salangidae, Salmonidae, Samaridae, Scatophagidae, Schilbeidae, Sciaenidae, Scoloplacidae, Scomberesocidae, Scombridae, Scombrolabracidae, Scombropidae, Scopelarchidae, Scophthalmidae, Scorpaenidae, Scorpididae, Scyliorhinidae, Scytalinidae, Serpenticobitidae, Serranidae, Serrasalmidae, Serrivomeridae, Siganidae, Sillaginidae, Siluridae, Sinipercidae, Sisoridae, Soleidae, Solenostomidae, Somniosidae, Sparidae, Sphyraenidae, Sphyrnidae, Spratelloididae, Squalidae, Squatinidae, Stegostomatidae, Steindachneriidae, Stephanoberycidae, Sternoptychidae, Sternopygidae, Stichaeidae, Stomiidae, Stromateidae, Stylephoridae, Sundadanionidae, Symphysanodontidae, Synagropidae, Synanceiidae, Synaphobranchidae, Synbranchidae, Syngnathidae, Synodontidae, Tanichthyidae, Tarumaniidae, Telmatherinidae, Terapontidae, Tetragonuridae, Tetraodontidae, Thalasseleotrididae, Thaumatichthyidae, Tincidae, Torpedinidae, Toxotidae, Trachichthyidae, Trachinidae, Trachipteridae, Trachyrincidae, Triacanthidae, Triacanthodidae, Triakidae, Trichiuridae, Trichodontidae, Trichomycteridae, Trichonotidae, Triglidae, Triodontidae, Triportheidae, Tripterygiidae, Trygonorrhinidae, Umbridae, Uranoscopidae, Urolophidae, Urotrygonidae, Vaillantellidae, Valenciidae, Veliferidae, Xenisthmidae, Xenocyprididae, Xiphiidae, Zanclidae, Zanclorhynchidae, Zaniolepididae, Zanobatidae, Zaproridae, Zeidae, Zenarchopteridae, Zeniontidae, Zoarcidae)",
 "Geometry POLYGON((-73.99045 -18.0415982, -41.7960691 -18.0415982, -41.7960691 5.2718411, -73.99045 5.2718411, -73.99045 -18.0415982))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56647 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013217-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.