cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh518055.07fu
title: SH518055.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2785821.08fu
title: SH2785821.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh2785822.08fu
title: SH2785822.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.18739306.v1
title: Additional file 6 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 6: Table S5. Analysis of cis-regulatory elements in the promoter regions of FaUBC genes.
DOI: 10.6084/m9.figshare.18739297.v1
title: Additional file 3 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 3: Table S2. Collinear pairs identified between Arabidopsis and strawberry.
DOI: 10.6084/m9.figshare.18739312.v1
title: Additional file 8 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 8: Table S7. KEGG function classification of FaUBC genes.
DOI: 10.6084/m9.figshare.18739294
title: Additional file 2 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 2: Table S1. The basic information of FaUBC genes in the genome of cultivated strawberry.
DOI: 10.6084/m9.figshare.18739300.v1
title: Additional file 4 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 4: Table S3. Ka, Ks and Ka/Ks of paralogous gene pairs of FaUBC genes.
DOI: 10.6084/m9.figshare.12972138.v1
title: Additional file 1 of Pelvic rotation parameters related to in-brace correction in patients with idiopathic scoliosis

description: Additional file 1. Data of patients with IS included in study.
DOI: 10.6084/m9.figshare.12972138
title: Additional file 1 of Pelvic rotation parameters related to in-brace correction in patients with idiopathic scoliosis

description: Additional file 1. Data of patients with IS included in study.
DOI: 10.6084/m9.figshare.18739309
title: Additional file 7 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 7: Table S6. GO categories and distribution of FaUBC genes.
DOI: 10.6084/m9.figshare.15063301
title: Additional file 2 of Prognosis and treatment of 46 Chinese pediatric cystic fibrosis patients

description: Additional file 2: Table S2. Clinical data of 46 Chinese CF patients.
DOI: 10.6084/m9.figshare.15063553
title: Additional file 1 of Genome of the pincer wasp Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation

description: Additional file 1: Supplementary Table 1. Statistics of Nanopore sequencing. Supplementary Table 2. Statistics of Illumina sequencing. Supplementary Table 3. Statistics of Gonatopus flavifemur genome assembly by Nanopore reads. Supplementary Table 4. Statistics of Gonatopus flavifemur genome assembly after error-corrected by Illumina and Nanopore reads. Supplementary Table 5. Genome size of G. flavifemur estimated by flow cytometry and 17-mer analysis. Supplementary Table 6. The mapping rate with short sequencing reads of Gonatopus flavifemur genome. Supplementary Table 7. Genes in detoxification system and chemoreception system in 13 hymenopterans. Supplementary Table 8. TE sequences in Gonatopus flavifemur and other surveyed species. Supplementary Table 9. Characteristics of DNA TEs in Gonatopus flavifemur. Supplementary Table 10. GO enrichment analysis of Aculeate-specific genes, Biological Process category (padj &lt; 0.05). Supplementary Table 11. GO enrichment analysis of Gonatopus flavifemur special genes. (padj &lt; 0.05). Supplementary Table 12. Genes under positive selection in Gonatopus flavifemur detected by both aBSREL model in HyPhy and branch-site model in PAML. Supplementary Table 13. GO enrichment analysis of Gonatopus flavifemur expanded gene families, Biological Process category (padj &lt; 0.05). Supplementary Table 14. Venom gland-associated genes (VGGs) in Gonatopus flavifemur. Supplementary Table 15. GO enrichment analysis of VGGs in Gonatopus flavifemur, Biological Process category (padj &lt; 0.05). Supplementary Table 16. Chitinase-like genes in Gonatopus flavifemur and other species. Supplementary Table 17. Neprilysin-like genes in Gonatopus flavifemur and other Hymenoptera genomes. Supplementary Table 18. Upregulated genes in the prey-feeding female transcriptomes compared to the sucrose-feeding female transcriptomes. Supplementary Table 19. Yellow genes and expression level in Gonatopus flavifemur. Supplementary Table 20. Downregulated genes in the prey-feeding female transcriptomes compared to the sucrose-feeding female transcriptomes. Supplementary Table 21. GO enrichment analysis of extremely female-biased genes in Gonatopus flavifemur. Biological Process category (padj &lt; 0.05). Supplementary Table 22. GO enrichment analysis of extremely male-biased genes in Gonatopus flavifemur. Biological Process category (padj &lt; 0.05). Supplementary Table 23. Extremely male-biased genes in Gonatopus flavifemur. Supplementary Table 24. Sample information for sequencing used in this study.
DOI: 10.6084/m9.figshare.14545029
title: Additional file 6 of Proteomic analysis of human frontal and temporal cortex using iTRAQ-based 2D LC-MS/MS

description: Additional file 6: Supplemental Table 4. Functional enrichment analysis of unchanged proteins and DEPs between frontal and temporal cortex in metascape and DAVID website. A. Biological process enrichment of unchanged proteins. B. Biological process enrichment of DEPs. C. KEGG signaling pathway enrichment of unchanged proteins. D. KEGG signaling pathway enrichment of DEPs.
DOI: 10.6084/m9.figshare.14545014
title: Additional file 1 of Proteomic analysis of human frontal and temporal cortex using iTRAQ-based 2D LC-MS/MS

description: Additional file 1: Supplemental Table 1. Identified/quantified proteome, technical and inter-individual variation for frontal and temporal lobes of all identified proteins. A. Protein identification and quantification data for frontal and temporal lobe. B. Protein quantification information, the technical variation and inter-individual variation for frontal lobe. C. Protein quantification information, the technical variation and inter-individual variation for temporal lobe.
DOI: 10.6084/m9.figshare.14545014.v1
title: Additional file 1 of Proteomic analysis of human frontal and temporal cortex using iTRAQ-based 2D LC-MS/MS

description: Additional file 1: Supplemental Table 1. Identified/quantified proteome, technical and inter-individual variation for frontal and temporal lobes of all identified proteins. A. Protein identification and quantification data for frontal and temporal lobe. B. Protein quantification information, the technical variation and inter-individual variation for frontal lobe. C. Protein quantification information, the technical variation and inter-individual variation for temporal lobe.
DOI: 10.5281/zenodo.10680473
title: Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells

description: Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells

Sukhbir Kaur1,*, Bianca Reginauld1, Sam Razjooyan1, Trung Phi 1, Satya P. Singh3, Thomas J. Meyer2, Margaret C. Cam2, David D. Roberts1,*

1                         Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD USA kaurs@mail.nih.gov; droberts@mail.nih.gov; biancareginauld@yahoo.co.uk; sam.razjooyan@aol.com; trunghphi@gmail.com

2                         CCR Collaborative Bioinformatics, Resource, Office of Science and Technology Resources, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA. margaret.cam@nih.gov; thomas.meyer@nih.gov

3                         Inflammation Biology Section, Laboratory of Molecular Immunology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA. spsingh@niaid.nih.gov

* Correspondence: kaurs@mail.nih.gov (SK); droberts@mail.nih.gov (DDR)

ORCID ID:

0000-0002-2481-2981  DR

0000-0003-0513-6225  SK

Datasets corresponding to publication: Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells. In Frontiers in Cell and Developmental Biology

This repository contains data to reproduce each figure contained in the manuscript, ‘Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells.’

Figure 1:  SIRPα-Fc increased Aldefluor activity in MDA-MB-231 cells

Figure S1: A) Expression of CD47 and SIRP alpha using MDA-MB-231 cells via flow cytometry analysis.

Figure S1C: CG disrupts binding between SIRPα and CD47

Figure S1G: Purity of CD24+high and CD24-low Fractions of cells were determined using anti-CD24 antibody via flow cytometry analysis.
DOI: 10.5281/zenodo.10680474
title: Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells

description: Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells

Sukhbir Kaur1,*, Bianca Reginauld1, Sam Razjooyan1, Trung Phi 1, Satya P. Singh3, Thomas J. Meyer2, Margaret C. Cam2, David D. Roberts1,*

1                         Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD USA kaurs@mail.nih.gov; droberts@mail.nih.gov; biancareginauld@yahoo.co.uk; sam.razjooyan@aol.com; trunghphi@gmail.com

2                         CCR Collaborative Bioinformatics, Resource, Office of Science and Technology Resources, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA. margaret.cam@nih.gov; thomas.meyer@nih.gov

3                         Inflammation Biology Section, Laboratory of Molecular Immunology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, USA. spsingh@niaid.nih.gov

* Correspondence: kaurs@mail.nih.gov (SK); droberts@mail.nih.gov (DDR)

ORCID ID:

0000-0002-2481-2981  DR

0000-0003-0513-6225  SK

Datasets corresponding to publication: Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells. In Frontiers in Cell and Developmental Biology

This repository contains data to reproduce each figure contained in the manuscript, ‘Effects of a humanized CD47 antibody and recombinant SIRPα proteins on triple negative breast carcinoma stem cells.’

Figure 1:  SIRPα-Fc increased Aldefluor activity in MDA-MB-231 cells

Figure S1: A) Expression of CD47 and SIRP alpha using MDA-MB-231 cells via flow cytometry analysis.

Figure S1C: CG disrupts binding between SIRPα and CD47

Figure S1G: Purity of CD24+high and CD24-low Fractions of cells were determined using anti-CD24 antibody via flow cytometry analysis.
DOI: 10.6084/m9.figshare.14545029.v1
title: Additional file 6 of Proteomic analysis of human frontal and temporal cortex using iTRAQ-based 2D LC-MS/MS

description: Additional file 6: Supplemental Table 4. Functional enrichment analysis of unchanged proteins and DEPs between frontal and temporal cortex in metascape and DAVID website. A. Biological process enrichment of unchanged proteins. B. Biological process enrichment of DEPs. C. KEGG signaling pathway enrichment of unchanged proteins. D. KEGG signaling pathway enrichment of DEPs.
DOI: 10.6084/m9.figshare.18739362
title: Additional file 1 of Penfluridol targets acid sphingomyelinase to inhibit TNF signaling and is therapeutic against inflammatory autoimmune diseases

description: Additional file 1.
DOI: 10.6084/m9.figshare.12972210.v1
title: Additional file 1 of Genetic profiling of primary and secondary tumors from patients with lung adenocarcinoma and bone metastases reveals targeted therapy options

description: Additional file 1.
DOI: 10.25545/xwgrbp/58m9k2
title: UnknownIndividuals_4populations_genepop

description: Individuals withheld from testing and training datasets in assignment tests, using the package assignPOP. Individuals were assigned to one of four populations, corresponding to their breeding colony. Data is in genepop format. This dataset was used to test the accuracy of the model built using the 'known individuals' dataset.
DOI: 10.25545/xwgrbp
title: Atlantic Puffin (Fratercula arctica) single-nucleotide polymorphism (SNP) datasets

description: Blood samples were collected from Atlantic Puffins breeding at five colonies in Atlantic Canada. DNA was extracted using a DNeasy Blood and Tissue DNA Kit from Qiagen. Triple digest genotype-by-sequencing (3D-GbS) library preparation was performed using three restriction enzymes (PstI/NsiI/MspI). Samples were sequenced on one lane using 150 bp, paired-end sequencing with an Illumina NovaSeq 6000. Data were assembled with Stacks v.2.6.1, see publication for full methodological details. Filtered SNP datasets used in genetic analyses are included here.
DOI: 10.25545/xwgrbp/ienrod
title: KnownIndividuals_2Clusters_genepop

description: Individuals used in testing and training datasets in assignment tests, using the package assignPOP. Individuals were assigned to one of two genetic clusters (MSI vs. 'Northern' colonies). Data is in genepop format.
DOI: 10.6084/m9.figshare.14545026.v1
title: Additional file 5 of Proteomic analysis of human frontal and temporal cortex using iTRAQ-based 2D LC-MS/MS

description: Additional file 5: Supplemental Table 3. Proteins involved in neurological disease. The function annotation, p value and molecules were displayed.
DOI: 10.6084/m9.figshare.18739354.v1
title: Additional file 2 of Gut microbiome alterations and gut barrier dysfunction are associated with host immune homeostasis in COVID-19 patients

description: Additional file 2: Table S1. The basic information of COVID-19 patients. Table S2. The basic information of fecal samples collected from COVID-19 patients. Table S3. The microbial species identified from all participants. Table S4. The associations between microbial species and clinical traits. Table S5. The abundance of microbial species in COVID-19 severe patients. Table S6. The abundance of microbial species in participants without using antibiotics. Table S7. The associations between microbial pathways and clinical traits. Table S8. The correlation between microbial virulence factors and clinical traits. Table S9. The associations between circulating level of lipopolysaccharide-binding protein and clinical traits. Table S10. The microbial taxa identified from all plasma samples of COVID-19 patients.
DOI: 10.6084/m9.figshare.12972229.v1
title: Additional file 2 of Five gene signatures were identified in the prediction of overall survival in resectable pancreatic cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.7205153.v1
title: Zircon U–Pb geochronology and Hf isotopic constraints on the petrogenesis of the Late Silurian Shidonggou granite from the Wulonggou area in the Eastern Kunlun Orogen, Northwest China

description: The Wulonggou area in the Eastern Kunlun Orogen (EKO) in Northwest China is characterized by extensive granitic magmatism, ductile faulting, and orogenic gold mineralizations. The Shidonggou granite is located in the central part of the Wulonggou area. This study investigated the major as well as trace-element compositions, zircon U–Pb dates, and zircon Hf isotopic compositions of the Shidonggou granite. Three Shidonggou granite samples yielded an average U–Pb zircon age of 416 Ma (Late Silurian). The Late Silurian Shidonggou granite is peraluminous, with high alkali contents, high Ga/Al ratios, high (K<sub>2</sub>O + Na<sub>2</sub>O)/CaO ratios, and high Fe<sub>2</sub>O<sub>3</sub><sup>T</sup>/MgO ratios, suggesting an A-type granite. The Shidonggou granite samples have zircon <i>ε</i><sub>Hf</sub>(<i>t</i>) values ranging from −7.1 to +4.4. The Hf isotopic data suggest that the Late Silurian granite was derived from the partial melting of Palaeo- to Mesoproterozoic juvenile mantle-derived mafic lower crust. Detailed geochronological and geochemical data suggest that the Late Silurian granite was emplaced in a post-collisional environment following the closure of the Proto-Tethys Ocean. Combining data of other A-type granitic rocks with ages of Late Early Silurian to Middle Devonian, such post-collisional setting related to the Proto-Tethys Ocean commenced at least as early as ~430 Ma (Late Early Silurian), and sustained up to ~389 Ma (Middle Devonian) in the EKO.
DOI: 10.6084/m9.figshare.12972232.v1
title: Additional file 3 of Five gene signatures were identified in the prediction of overall survival in resectable pancreatic cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.18739362.v1
title: Additional file 1 of Penfluridol targets acid sphingomyelinase to inhibit TNF signaling and is therapeutic against inflammatory autoimmune diseases

description: Additional file 1.
DOI: 10.6084/m9.figshare.14545017.v1
title: Additional file 2 of Proteomic analysis of human frontal and temporal cortex using iTRAQ-based 2D LC-MS/MS

description: Additional file 2: Supplemental Table 2. Protein identification and quantification data in both frontal and temporal lobe. A. Protein identification and quantification data in both frontal and temporal lobe. B. Quantified proteins with calculation of p-value and fold change. C. Unchanged proteins. D. Differentially expressed proteins. E. up-regulated and down-regulated proteins.
DOI: 10.6084/m9.figshare.12972210
title: Additional file 1 of Genetic profiling of primary and secondary tumors from patients with lung adenocarcinoma and bone metastases reveals targeted therapy options

description: Additional file 1.
DOI: 10.6084/m9.figshare.18739306
title: Additional file 6 of Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening

description: Additional file 6: Table S5. Analysis of cis-regulatory elements in the promoter regions of FaUBC genes.
DOI: 10.15468/dl.f4zr38
title: Occurrence Download

description: A dataset containing 386 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala triflora L."
 ]
}

 The dataset includes 386 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0091939-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9q2dhs
title: Occurrence Download

description: A dataset containing 419629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 419629 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075191-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-57869
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.5qa5sy
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is KiEco Freshwater Ecology: River Macroinvertebrates",
 "Geometry POLYGON((-5.1302 51.83671,-5.10489 51.84542,-5.10347 51.85722,-5.10965 51.86886,-5.13334 51.86303,-5.1302 51.83671))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0324466-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqvw62
title: Occurrence Download

description: A dataset containing 114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesembryanthemum dinteri Engl."
 ]
}

 The dataset includes 114 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097067-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.