cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12703845
title: Additional file 2 of Scent dog identification of samples from COVID-19 patients – a pilot study

description: Additional file 2: Additional Table. Characteristics of the dogs. The additional table (Additional file 2) shows the signalment and background of the eight dogs that participated in the study.
DOI: 10.6084/m9.figshare.12703847
title: Additional file 3 of Type 2 diabetes susceptibility genes on mouse chromosome 11 under high sucrose environment

description: Additional file 3. Type 2 diabetes associated SNPs in human GWAS identified on mouse chromosome 11.
DOI: 10.6084/m9.figshare.12703845.v1
title: Additional file 2 of Scent dog identification of samples from COVID-19 patients – a pilot study

description: Additional file 2: Additional Table. Characteristics of the dogs. The additional table (Additional file 2) shows the signalment and background of the eight dogs that participated in the study.
DOI: 10.6084/m9.figshare.12703847.v1
title: Additional file 3 of Type 2 diabetes susceptibility genes on mouse chromosome 11 under high sucrose environment

description: Additional file 3. Type 2 diabetes associated SNPs in human GWAS identified on mouse chromosome 11.
DOI: 10.6084/m9.figshare.12703664
title: Additional file 1 of COVID-19 prevalence estimation by random sampling in population - optimal sample pooling under varying assumptions about true prevalence

description: Additional file 1 : Supplementary Table 1. Table containing prevalence estimates and, the estimated required number of tests, and the expected proportion incorrectly classified patients for all parameter combinations. Se = sensitivity. Sp = specificity. N = number of samples. k = pooling level. P = true prevalence. p 2.5%, p 50.0%, p 97.5% = 2.5, 50 and 97.5 quantile of estimated prevalence. T 2.5%, T 50.0%, T 97.5% = 2.5, 50 and 97.5 quantile of estimated number of tests required to get individual-level diagnoses. E(S) = Expected number of tests saved when compared to testing individually for this N. E(inc) = Expected percentage of patients that are diagnosed incorrectly at this parameter combination. [Excel file].
DOI: 10.6084/m9.figshare.12703658
title: Additional file 1 of Amino acid sequence associated with bacteriophage recombination site helps to reveal genes potentially acquired through horizontal gene transfer

description: Additional file 1: Supplementary Table T1. Results of three iterations of jackhammer search. Proteins containing cysteine-rich repeats.
DOI: 10.6084/m9.figshare.12703664.v1
title: Additional file 1 of COVID-19 prevalence estimation by random sampling in population - optimal sample pooling under varying assumptions about true prevalence

description: Additional file 1 : Supplementary Table 1. Table containing prevalence estimates and, the estimated required number of tests, and the expected proportion incorrectly classified patients for all parameter combinations. Se = sensitivity. Sp = specificity. N = number of samples. k = pooling level. P = true prevalence. p 2.5%, p 50.0%, p 97.5% = 2.5, 50 and 97.5 quantile of estimated prevalence. T 2.5%, T 50.0%, T 97.5% = 2.5, 50 and 97.5 quantile of estimated number of tests required to get individual-level diagnoses. E(S) = Expected number of tests saved when compared to testing individually for this N. E(inc) = Expected percentage of patients that are diagnosed incorrectly at this parameter combination. [Excel file].
DOI: 10.6084/m9.figshare.12703658.v1
title: Additional file 1 of Amino acid sequence associated with bacteriophage recombination site helps to reveal genes potentially acquired through horizontal gene transfer

description: Additional file 1: Supplementary Table T1. Results of three iterations of jackhammer search. Proteins containing cysteine-rich repeats.
DOI: 10.6084/m9.figshare.12703635
title: Additional file 9 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 9 Metrics of BiPOm before and after reasoning on the metabolic network of E. coli. Additional Table 6 contains the metrics of BiPOm (i) before and (ii) after instantiation, and finally (iii) after automatic reasoning.
DOI: 10.6084/m9.figshare.12703629
title: Additional file 7 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 7 Quantitative comparison of inferences in BiPOm and in bioPAX. Additional Table 4 contains the number of class/property axioms before and after reasoning in both BiPOm and BioPAX.
DOI: 10.6084/m9.figshare.12703632
title: Additional file 8 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 8 Table of BiPOm instantiation for the metabolic network of Escherichia coli. Additional Table 5 contains the instances of BiPOm classes necessary to describe the metabolic network of E. coli.
DOI: 10.6084/m9.figshare.12703626
title: Additional file 6 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 6 Metrics of BiPOm before and after reasoning on the rPPC of A. thaliana. Additional Table 3 contains the metrics of BiPOm (i) before and (ii) after instantiation, and finally (iii) after automatic reasoning.
DOI: 10.6084/m9.figshare.12703635.v1
title: Additional file 9 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 9 Metrics of BiPOm before and after reasoning on the metabolic network of E. coli. Additional Table 6 contains the metrics of BiPOm (i) before and (ii) after instantiation, and finally (iii) after automatic reasoning.
DOI: 10.6084/m9.figshare.12703626.v1
title: Additional file 6 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 6 Metrics of BiPOm before and after reasoning on the rPPC of A. thaliana. Additional Table 3 contains the metrics of BiPOm (i) before and (ii) after instantiation, and finally (iii) after automatic reasoning.
DOI: 10.6084/m9.figshare.12703629.v1
title: Additional file 7 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 7 Quantitative comparison of inferences in BiPOm and in bioPAX. Additional Table 4 contains the number of class/property axioms before and after reasoning in both BiPOm and BioPAX.
DOI: 10.6084/m9.figshare.12703632.v1
title: Additional file 8 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 8 Table of BiPOm instantiation for the metabolic network of Escherichia coli. Additional Table 5 contains the instances of BiPOm classes necessary to describe the metabolic network of E. coli.
DOI: 10.6084/m9.figshare.12703620
title: Additional file 4 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 4 List of BiPOm properties. Additional Table 1 contains the properties of BiPOm that can be (i) asserted, (ii) defined as the inverse of an asserted property, or (iii) defined by a SWRL rule.
DOI: 10.6084/m9.figshare.12703623
title: Additional file 5 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 5 Table of BiPOm instantiation for the rPPC of Arabidopsis thaliana. Additional Table 2 contains the instances of BiPOm classes necessary to describe the RPPC of A. thaliana.
DOI: 10.6084/m9.figshare.12703620.v1
title: Additional file 4 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 4 List of BiPOm properties. Additional Table 1 contains the properties of BiPOm that can be (i) asserted, (ii) defined as the inverse of an asserted property, or (iii) defined by a SWRL rule.
DOI: 10.6084/m9.figshare.12703623.v1
title: Additional file 5 of BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

description: Additional file 5 Table of BiPOm instantiation for the rPPC of Arabidopsis thaliana. Additional Table 2 contains the instances of BiPOm classes necessary to describe the RPPC of A. thaliana.
DOI: 10.6084/m9.figshare.12703538
title: Additional file 2 of Identification by TCGA database search of five genes that are aberrantly expressed and involved in hepatocellular carcinoma potentially via DNA methylation changes

description: Additional file 2: Table S2. List of up/down regulated genes in HCC tissues compared with normal liver tissues
DOI: 10.6084/m9.figshare.12703538.v1
title: Additional file 2 of Identification by TCGA database search of five genes that are aberrantly expressed and involved in hepatocellular carcinoma potentially via DNA methylation changes

description: Additional file 2: Table S2. List of up/down regulated genes in HCC tissues compared with normal liver tissues
DOI: 10.6084/m9.figshare.12703535
title: Additional file 1 of Identification by TCGA database search of five genes that are aberrantly expressed and involved in hepatocellular carcinoma potentially via DNA methylation changes

description: Additional file 1: Table S1. Sample ID of HCC and normal liver tissues in TCGA database
DOI: 10.6084/m9.figshare.12703535.v1
title: Additional file 1 of Identification by TCGA database search of five genes that are aberrantly expressed and involved in hepatocellular carcinoma potentially via DNA methylation changes

description: Additional file 1: Table S1. Sample ID of HCC and normal liver tissues in TCGA database
DOI: 10.5258/soton/d1484
title: Dataset for wide domain simulations of flow over an unswept laminar wing section undergoing transonic buffet

description: This dataset corresponds to the publication: Wide domain simulations of flow over an unswept laminar wing section undergoing transonic buffet by M. Zauner & N.D. Sandham in Physical Review Fluids, 2020. This data-set contains the source code to compile the SE-ILES grid (it was not possible to include DassaultAviation’s V2C profile), a python code for two-point correlation, data corresponding to figures 2, 3, 4, 5, 6, 8, 9, 13, and animations. The latter includes histories of aerodynamic coefficients, unsteady data to generate x-t plots for surface pressure or at a monitor curve outside the boundary layers. Note: .dat files are written in ASCII format and can be read by tecplot.
DOI: 10.6084/m9.figshare.12703479
title: Additional file 1 of Drug-target interactions prediction using marginalized denoising model on heterogeneous networks

description: Additional file 1. Compound-Protein Interaction pairs selected for large-scale CPIs prediction. This file records the detailed compound-protein interaction pairs selected for large-scale CPIs prediction. These data were extracted from STITCH database (Version 5.0) with combined scores greater than 900 in Homo sapiens and contains 13,286 drugs, 5313 targets, and 116,199 interactions. In this file, compounds are derived from PubChem with the prefix “CID”, proteins are derived from Ensembl with the prefix “ENSP”, scores are the combined scores in STITCH database. The scores indicate the interaction probability of corresponding compound protein interaction pair. All detailed information about these interactions can be found in STITCH database.
DOI: 10.6084/m9.figshare.12703479.v1
title: Additional file 1 of Drug-target interactions prediction using marginalized denoising model on heterogeneous networks

description: Additional file 1. Compound-Protein Interaction pairs selected for large-scale CPIs prediction. This file records the detailed compound-protein interaction pairs selected for large-scale CPIs prediction. These data were extracted from STITCH database (Version 5.0) with combined scores greater than 900 in Homo sapiens and contains 13,286 drugs, 5313 targets, and 116,199 interactions. In this file, compounds are derived from PubChem with the prefix “CID”, proteins are derived from Ensembl with the prefix “ENSP”, scores are the combined scores in STITCH database. The scores indicate the interaction probability of corresponding compound protein interaction pair. All detailed information about these interactions can be found in STITCH database.
DOI: 10.6084/m9.figshare.12703425
title: Additional file 3 of Patient-reported outcomes in major depressive disorder with suicidal ideation: a real-world data analysis using PatientsLikeMe platform

description: Additional file 3: Supplementary Table 1. Exclusion criteria
DOI: 10.6084/m9.figshare.12703422
title: Additional file 2 of Patient-reported outcomes in major depressive disorder with suicidal ideation: a real-world data analysis using PatientsLikeMe platform

description: Additional file 2: Supplementary Figure 2. Receiver operating characteristic curve of the random forest model
DOI: 10.6084/m9.figshare.12703419
title: Additional file 1 of Patient-reported outcomes in major depressive disorder with suicidal ideation: a real-world data analysis using PatientsLikeMe platform

description: Additional file 1: Supplementary Figure 1. Mood Map analysis of reported symptoms. (A) Mood map average over time (B) Mood map highest ever severity
DOI: 10.6084/m9.figshare.12703425.v1
title: Additional file 3 of Patient-reported outcomes in major depressive disorder with suicidal ideation: a real-world data analysis using PatientsLikeMe platform

description: Additional file 3: Supplementary Table 1. Exclusion criteria
DOI: 10.6084/m9.figshare.12703422.v1
title: Additional file 2 of Patient-reported outcomes in major depressive disorder with suicidal ideation: a real-world data analysis using PatientsLikeMe platform

description: Additional file 2: Supplementary Figure 2. Receiver operating characteristic curve of the random forest model
DOI: 10.6084/m9.figshare.12703419.v1
title: Additional file 1 of Patient-reported outcomes in major depressive disorder with suicidal ideation: a real-world data analysis using PatientsLikeMe platform

description: Additional file 1: Supplementary Figure 1. Mood Map analysis of reported symptoms. (A) Mood map average over time (B) Mood map highest ever severity
DOI: 10.6084/m9.figshare.12703121
title: Extrapolation and uncertainty evaluation of carbon dioxide and methane emissions in the Qinghai-Tibetan Plateau wetlands since the 1960s

description: Data was collected from alpine wetlands on the Qinghai-Tibetan Plateau.<br>
DOI: 10.6084/m9.figshare.12703124
title: fig-6.xlsx

description: Permeability change for no-flow boundary vs infinite boundary conditions
DOI: 10.6084/m9.figshare.12703124.v1
title: fig-6.xlsx

description: Permeability change for no-flow boundary vs infinite boundary conditions
DOI: 10.6084/m9.figshare.12703121.v1
title: Extrapolation and uncertainty evaluation of carbon dioxide and methane emissions in the Qinghai-Tibetan Plateau wetlands since the 1960s

description: Data was collected from alpine wetlands on the Qinghai-Tibetan Plateau.<br>
DOI: 10.6084/m9.figshare.12703121.v3
title: Extrapolation and uncertainty evaluation of carbon dioxide and methane emissions in the Qinghai-Tibetan Plateau wetlands since the 1960s

description: Data was collected from alpine wetlands on the Qinghai-Tibetan Plateau.<br>
DOI: 10.6084/m9.figshare.12703121.v2
title: Extrapolation and uncertainty evaluation of carbon dioxide and methane emissions in the Qinghai-Tibetan Plateau wetlands since the 1960s

description: Data was collected from alpine wetlands on the Qinghai-Tibetan Plateau.<br>
DOI: 10.6084/m9.figshare.12703004
title: Gene database of Methylorubrum extorquens strain TK 0001

description: Formerly known as <i>Methylobacterium extorquens</i>, <i>Methylorubrum extorquens</i> is a methylotrophic bacterium capable of a versatile lifestyle. Able to use acetate, succinate and methanol as carbon sources, the bacterium offers a platform for producing useful products from unconventional substrate in metabolic engineering. This work sought to provide fundamental information about the genetic repertoire of <i>M. extorquens</i> TK0001 through parsing the annotated genome sequence of the bacterium downloaded from Genbank. The resulting gene database comprises gene name, gene function, and gene sequence, and should inform molecular cloning work for deploying interesting genes from <i>M. extorquens</i> in established biotechnology chassis such as <i>Escherichia coli</i> to overcome challenges with the use of <i>M. extorquens</i> in biotechnology.
DOI: 10.26180/5f1a443b19b2f
title: S. sonnei 53G (NC016822) repeat regions

description: Table of repeated regions within the S. sonnei 53G genome that were excluding during mapping
DOI: 10.6084/m9.figshare.12702872
title: Dataset: Vast amounts of encoded items nullify but do not reverse the effect of sleep on declarative memory

description: 80 participants learned a very large number of 640 word-pairs over the course of an entire day and then either slept or stayed awake during the night. Recall was tested after another night of regular sleep. <br>Multiple control measures have been taken: working memory (OSPAN; Unsworth et al., 2005), word generation task (RWT; Aschenbrenner et al., 2000), reaction speed (PVT; Dinges & Kribbs, 1991), subjective sleepiness (SSS; Hoddes et al., 1973), actimetry data. <br>Participants received adequate monetary compensation for their contribution and provided written informed consent prior to the experiment. The study was approved by the local ethics committee.<br>
DOI: 10.6084/m9.figshare.12702872.v1
title: Dataset: Vast amounts of encoded items nullify but do not reverse the effect of sleep on declarative memory

description: 80 participants learned a very large number of 640 word-pairs over the course of an entire day and then either slept or stayed awake during the night. Recall was tested after another night of regular sleep. <br>Multiple control measures have been taken: working memory (OSPAN; Unsworth et al., 2005), word generation task (RWT; Aschenbrenner et al., 2000), reaction speed (PVT; Dinges & Kribbs, 1991), subjective sleepiness (SSS; Hoddes et al., 1973), actimetry data. <br>Participants received adequate monetary compensation for their contribution and provided written informed consent prior to the experiment. The study was approved by the local ethics committee.<br>
DOI: 10.6084/m9.figshare.12702455
title: Gridded CO₂ Emissions and Population for Cambodia, Laos, and Vietnam (2000,2005,2010)

description: Emissions data in this archive are the non-point source estimates from the ODIAC (Open-source Data Inventory for Anthropogenic CO₂) product. ODIAC is a global high-resolution emission data product for fossil fuel carbon dioxide (CO₂) emissions. The ODIAC is based on spatial disaggregation of CO₂ emission estimates made by the Carbon Dioxide Information Analysis Center (CDIAC) at the Oak Ridge National Lab (ORNL). The years and region of the data uploaded here match the spatial extent of the gridded, population estimates, presented as people per pixel, also included in the archive. The gridded population data are based on methods described in Stevens, et al., 2015. and are derived from the WorldPop global mosaics (2000-2020), but produced using a model that excludes nighttime lights covariates as input into the model. Both data products are provided at the 1 x 1 km grid cell for the years 2000, 2005, and 2010.<br>More about the ODIAC data and associated products can be found here: http://odiac.org<br>More about WorldPop data and associated products can be found here: https://www.worldpop.org
DOI: 10.6084/m9.figshare.12702449
title: counts_for_sim.txt from Ran

description: counts_for_sim.txt from Ran, corresponding to this page: https://hackmd.io/@astrobiomike/simulating-illumina-reads
DOI: 10.6084/m9.figshare.12702449.v1
title: counts_for_sim.txt from Ran

description: counts_for_sim.txt from Ran, corresponding to this page: https://hackmd.io/@astrobiomike/simulating-illumina-reads
DOI: 10.6084/m9.figshare.12702401
title: CompiledPlasticityData.xlsx

description: Compiled plasticity data for laboratory behavioral plasticity study.
DOI: 10.6084/m9.figshare.12702401.v1
title: CompiledPlasticityData.xlsx

description: Compiled plasticity data for laboratory behavioral plasticity study.
DOI: 10.6084/m9.figshare.12702143
title: Supplemental Table 4 - Inclusion Criteria for Coded Themes

description: This table shows the inclusion criteria for coded themes generated from the survey results.
DOI: 10.6084/m9.figshare.12702125
title: Supplemental Table 3 - Word Frequency

description: This table shows participant comparative physiology open-ended definitions word frequency
DOI: 10.6084/m9.figshare.12701795
title: Supplemental Table 2 - Participant Demographics

description: This table shows the demographics of the participants that took the survey.
DOI: 10.6084/m9.figshare.12702125.v1
title: Supplemental Table 3 - Word Frequency

description: This table shows participant comparative physiology open-ended definitions word frequency
DOI: 10.6084/m9.figshare.12701273
title: Supplemental Table 1 - Contacted Societies

description: This table shows the societies that were contacted to recruit participants for the survey.
DOI: 10.6084/m9.figshare.12702143.v1
title: Supplemental Table 4 - Inclusion Criteria for Coded Themes

description: This table shows the inclusion criteria for coded themes generated from the survey results.
DOI: 10.6084/m9.figshare.12700634
title: Supplemental Text 2 - Emails

description: This is the recruitment email sent to professional societies and their members.<br>
DOI: 10.6084/m9.figshare.12701273.v1
title: Supplemental Table 1 - Contacted Societies

description: This table shows the societies that were contacted to recruit participants for the survey.
DOI: 10.6084/m9.figshare.12699602
title: Supplemental Text 1 - Consent form and survey questions

description: This text shows the consent and survey questions.
DOI: 10.6084/m9.figshare.12699602.v1
title: Supplemental Text 1 - Consent form and survey questions

description: This text shows the consent and survey questions.
DOI: 10.6084/m9.figshare.12698900
title: DNA sequence data from Mondajem et al. (2020) A revision of pipistrelle-like bats (Mammalia: Chiroptera: Vespertilionidae) in East Africa with the description of new genera and species.

description: Cytochrome-b sequence alignment used in phylogenetic analyses in this study<br>
DOI: 10.6084/m9.figshare.12698765
title: Bland Altman data.dta

description: Data were used to check for agreement between the two measurements, that is self reports and accelerometer MVPA
DOI: 10.6084/m9.figshare.12698768
title: Box plots data.dta

description: The box and whisker plots were used to check for the variability between self reports activities and accelerometer blocks of activities
DOI: 10.6084/m9.figshare.12698900.v1
title: DNA sequence data from Mondajem et al. (2020) A revision of pipistrelle-like bats (Mammalia: Chiroptera: Vespertilionidae) in East Africa with the description of new genera and species.

description: Cytochrome-b sequence alignment used in phylogenetic analyses in this study<br>
DOI: 10.6084/m9.figshare.12698762
title: Regression data.dta

description: Data were used to explore the associations between weekday accelerometer MVPA and different child variables
DOI: 10.6084/m9.figshare.12698768.v1
title: Box plots data.dta

description: The box and whisker plots were used to check for the variability between self reports activities and accelerometer blocks of activities