cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2n4t9bw3xz.1
title: One-shot entorhinal maps enable flexible navigation in novel environments - part 2

description: Neuropixels 1.0 and 2.0 were used to collect electrophysiological data from head-fixed mice navigating virtual reality linear environments or from freely moving mice randomly foraging in open field environments. This dataset is part 2 of 2 and contains data from two tasks: 1. The Hidden Reward Track; 2. The sessions where animals first ran head-fixed in darkness and then foraged freely in an open field. More details can be found at the preprint here: https://www.biorxiv.org/content/10.1101/2023.09.07.556744v1. A link to a peer-reviewed publication will be provided once available.

This dataset contains the same variables in the .mat files as in dataset part 1 of 2, with the following exceptions. In this dataset, all but four of the VR sessions (Saline Only or Muscimol Only) are associated with Neuropixels data collected while animals ran on VR tracks (see the supplementary data table in the paper above for more details). In the four sessions where Neuropixels data were not collected, trial_starts is of length n_blocks + 1, where the final value is one greater than the total number of trials in that session. Finally, data collected from animal AJ2 on the hidden reward task took place on a 240cm VR track instead of a 200cm track. 

Neuropixels 2.0 probes were chronically implanted in mice that first ran head-fixed in darkness and then freely foraging in an open field. Each session is associated with four files:
1. A .mat file containing the same variables described in dataset part 1 of 2.
2. A "_position.txt" file, which contains behaviorally relevant variables, such as position, heading direction, and speed for each observation. See the header in the file for more information.
3. A "_arena.txt" file, which contains the boundaries of the open field environment needed to run the script "calculate_and_plot_open_field.ipynb" included in the code repository: https://github.com/GiocomoLab/mec-rapid-learning. 
4. A "_spikes.txt" file, which contains the concatenated spikes from the head-fixed run and the open field run. This file can be loaded with the script "VR_and_OF_spikes.py" that is also included in the code repository.
DOI: 10.17632/mvjd7n72sx.1
title: Journal of Islamic Education; No. 31

description: Philosophy of Islamic education;
 Schools and approaches to Islamic education;
 Educational jurisprudence (Fiqh);
 Foundations, principles and methodology of Islamic education;
 History of Islamic education;
 Educational thoughts, views and ideas of Muslim scholars;
 Educational sciences such as educational management, curriculum planning and educational psychology with an Islamic approach;
 Comparative studies;
 The areas and dimensions of education in Islam include religious education, devotional education, moral education, sexual education, political education, and so on;
 Methodology of research in Islamic education;
 Examining different aspects of formal education with Islamic perspective;
DOI: 10.15468/dl.ccna6q
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.577742 -33.065431, 149.577742 -33.067676, 149.584479 -33.067676, 149.584479 -33.072168, 149.586725 -33.072168, 149.586725 -33.074414, 149.593462 -33.074414, 149.593462 -33.072168, 149.595708 -33.072168, 149.595708 -33.067676, 149.586725 -33.067676, 149.586725 -33.065431, 149.577742 -33.065431)), ((149.586725 -33.074414, 149.584479 -33.074414, 149.584479 -33.078905, 149.579987 -33.078905, 149.579987 -33.085643, 149.584479 -33.085643, 149.584479 -33.087889, 149.593462 -33.087889, 149.593462 -33.085643, 149.588971 -33.085643, 149.588971 -33.081151, 149.586725 -33.081151, 149.586725 -33.074414)), ((149.595708 -33.072168, 149.595708 -33.074414, 149.602445 -33.074414, 149.602445 -33.072168, 149.595708 -33.072168)), ((149.602445 -33.072168, 149.604691 -33.072168, 149.604691 -33.067676, 149.602445 -33.067676, 149.602445 -33.072168)))"
 ]
}

 The dataset includes 202 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049641-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/59jswfx2dc.1
title: Mendeley Dta

description: Dataset of Numerical Study of the Impact of Two-Step Injection (Direct and Port) of Hydrogen-Enriched and Natural Gas Mixtures on Engine Efficiency and Exhaust Emissions
DOI: 10.17632/rhk5drfk78.1
title: Social, task and information elements and their interactions in a disaster response

description: The data are derived from a detailed case study of the emergency response to the severe rainstorm and geological disaster that occurred in Longchuan County, China, in 2019. The whole event is extensively documented in the published monograph, ''Comprehensive Response to Emergencies: Lessons from the 2019 Severe Rainstorm and Geological Disaster in Longchuan County''. The data are particularly representative as they encapsulate a comprehensive record of emergency management activities, from the collection of meteorological and hydrological information to the initiation and execution of a Level III flood control emergency response. Moreover, the data details the collaborative interactions among various human and non-human agents and the rich relationships among information and task elements. Therefore, this data set is suitable for the study of distributed situation awareness (DSA) in disaster response.
DOI: 10.15468/dl.kwpw4p
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Opuntia schickendantzii F.A.C.Weber)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 56 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049642-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wvn8x46h68.1
title: Data Sets of ESR1 Expression in HESC cultures and ESR1 and PR levels in Wistar rat's endometrium when treated with Adansonia digitata root bark fractions.

description: Adansonia digitata Linn root bark extract alters oestrogen and progesterone activities in the female Wistar rat. We hypothesized that components of the extract may act through the regulation of oestrogen and progesterone transduction. We obtained fractions from Aqueous methanol extract of Adansonia digitata root bark through Column chromatography with different solvents; acetyl acetate, methanol, and distilled water, to yield acetyl acetate-methanol fraction (AAMF); Aqueous methanol fraction (AQMF); and Aqueous fraction (AQF). The fractions were investigated for their effect on the gene expression of oestrogen receptor alpha (ESR1) in Human endometrial stromal cell (HESC) line (Data 1).
The effect of the acetyl acetate-methanol fraction of the extract on the location and levels of ESR1 and progesterone receptor alpha-beta (PR) in the mature virgin female Wistar rat's uterus was also investigated (Data 2 - 6).
The results revealed that AAMF at 50 – 500 µg /ml downregulates ESR1 gene expression in HESC cultures. In the Wistar rat's uterus, AAMF at 150 - 300 mg/kg bodyweight caused a reduction in membrane-located ESR1 levels in the endometrial glands and epithelium, but increased PR levels in the endometrial stroma.
DOI: 10.15468/dl.4pxvtj
title: Occurrence Download

description: A dataset containing 1369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crotalus durissus Linnaeus, 1758"
 ]
}

 The dataset includes 1369 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049643-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/nnmhhnbf97.1
title: Data for Global Convergence of Molecular Evolution in Root Flora

description: The compressed file RootFlora.zip contains the specified directories and relevant files detailed below:

1. 205species
This folder includes TD-, WGD- and HGT-derived genes, gene families, and Ks values of TD-derived gene pairs in each of 205 studied species.

2. Ancestral_and_specific_TD_events
Ancestral and independent TD events in Arabidopsis thaliana, Schrenkiella parvula, Oryza sativa and Zizania latifolia. The TD events that occurred before and after the divergence of A. thaliana and S. parvula, as well as O. sativa and Z. latifolia, were considered ancestral and specific TD events, respectively.

3. Biotic_stress
List of upregulated genes in Arabidopsis thaliana and Oryza sativa and under biotic stresses, such as Botrytis cinereal, Colletotrichum tofieldiae, flg22, Heterodera schachti nematodes, Heterodera schachtii parasitism, Pseudomonas syringae, Rhizobium sp, and Verticillium dahlia on Arabidopsis thaliana and Meloidogyne incognita, Magnaporthe oryzae, Azospirillum brasilense, Soil microbiome, Hirschmanniella oryzae, Rhizophagus irregularis, Burkholderia vietnamiensis and Paraburkholderia kururiensis on Oryza sativa.

4. GLM_analysis
The details of the species geographical coordinates, climatic, anthropogenic, edaphic, and plant morpho-ecospace variables, and the GLM analysis results of 1000 bootstrap resampling replicates.

5. GO_enrichment
The GO term annotations for 28 representative species and enriched terms of TD- and WGD-derived family genes.

6. MLtree
The original phylogenetic tree files for the ten TD-derived families. The phylogenetic trees were constructed using 17 representative plants, including Rhodophytes (Galdieria sulphuraria and Gracilariopsis chorda), Prasinodermophyta (Prasinoderma coloniale), Chlorophytes (Chlamydomonas reinhardtii and Chloropicon primus), Charophytes (Klebsormidium nitens and Mesotaenium endlicherianum), Bryophytes (Marchantia polymorpha and Anthoceros angustus), Lycophytes (Isoetes taiwanensis and Selaginella moellendorffii), Ferns (Adiantum capillus-veneris and Alsophila spinulosa), Gymnosperms (Torreya grandis and Pinus lambertiana), and Angiosperms (Arabidopsis thaliana and Oryza sativa).

7. Mangroves
The details of 15 mangrove genomes. You can obtain gene lists of TD-derived genes, gene families, and Ks values of TD-gene pairs in each mangrove species form this folder.

8. Code
The code used in this study, including 'HGTdetector.sh' and other scripts.
DOI: 10.15468/dl.9rk7sw
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Opuntia tortispina Engelm. & J.M.Bigelow)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 216 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049646-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u77pss
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciodaphyllum rivas-martinezii A.Fuentes & Cayola"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049645-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5qprq
title: Occurrence Download

description: A dataset containing 9155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Echimyidae"
 ]
}

 The dataset includes 9155 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049648-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4c2swa
title: Occurrence Download

description: A dataset containing 1758 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pygocentrus nattereri Kner, 1858"
 ]
}

 The dataset includes 1758 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049647-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axy9k9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.329077 -33.085643, 148.329077 -33.090134, 148.335815 -33.090134, 148.335815 -33.087889, 148.342552 -33.087889, 148.342552 -33.085643, 148.329077 -33.085643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049649-240626123714530/datasets/export for details.
DOI: 10.17632/2ckzwfsc8n.1
title: Data for: Characterization and source attribution of PM10 and PM2.5 aerosols via Energy Dispersive X-Ray Fluorescence and Positive Matrix Factorization

description: Raw data for the manuscript: Characterization and source attribution of PM10 and PM2.5 aerosols via Energy Dispersive X-Ray Fluorescence and Positive Matrix Factorization.
This data include elemental composition of PM10 and PM2.5 samples analyzed by Energy Dispersive X-Ray Fluorescence spectrometry. The data was used to identify the main sources of PM10 and PM2.5 in an urban environments in La Habana, Cuba. Using this dataset, a source apportionment study employing PMF 5.0 was performed in order to assess the air quality and identify the main pollution sources.
DOI: 10.15468/dl.57pdu6
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ortegocactus macdougallii Alexander)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049650-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/493rdzy3mm.2
title: Tension Sensors

description: Files regarding a comparison made between two tension sensors:
- Solidworks files for the enclosure necessary to attach the DYMH sensor to the cable
- Solidworks files for the pulley that pull the load cell (pulley-type tension sensor)
- Source files in cpp as part of the project that allows obtaining data from the HX711
- Matlab script with the experiment tension-strain, in order to obtain the coefficient of elasticity
- Matlab script to obtain the poles, zeros and root locus for the actuator dynamics including elasticity
- Kicad files for the connection between a ESP32 Wroom WIFI + Bluetooth
- Calibration files and script in Matlab for the calibration of the sensors
- Resulting data and script in Matlab to show the relationship between the real tension and the commanded tension
DOI: 10.15468/dl.8fedcg
title: Occurrence Download

description: A dataset containing 951 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacaratia mexicana A.DC."
 ]
}

 The dataset includes 951 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049652-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xj5ptm964y.1
title: ISESO-IX_Venkataramana et al

description: A detailed method description and other related parameters for physicochemical and biological properties in the water column of Coastal Antarctica of this dataset is originally a part of the ongoing peer review article "Response of zooplankton to unusual increase in temperature and sea ice melting in coastal Antarctica: Climate change perspective" in JGR-Oceans by V.Venkataramana, R.K.Mishra, Melena A. Soares, P.Sabu, Alvarinho J. Luis, A. Sarkar, T.Jabir, A. Srinivas Rao, Rahul Mohan
DOI: 10.15468/dl.bb273d
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sciodaphyllum rivas-martinezii A.Fuentes & Cayola"
 ]
}

 The dataset includes 66 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049653-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unt2tz
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is Academy of Natural Sciences of Philadelphia Ornithology Collection",
 "TaxonKey is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 33 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049654-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7mxt3
title: Occurrence Download

description: A dataset containing 70254 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mugil curema Valenciennes, 1836)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70254 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049651-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xecm2p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.027521 -33.085643, 149.027521 -33.090134, 149.029767 -33.090134, 149.029767 -33.085643, 149.027521 -33.085643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049655-240626123714530/datasets/export for details.
DOI: 10.17632/ny76bc7j7x.1
title: growth performance, immune response, and rumen/blood parameters of suckling calves when using different fat sources

description: Calf rearing from birth to weaning is a critical and sensitive period in dairy farming, as it determines the future of a herd. The objective of this research was to examine the impact of various fat sources on growth performance, immune response, and both ruminal and blood parameters in suckling calves. To achieve this goal, 40 female Holstein calves with an average weight of 40 kg and a body score of 3 were studied from birth to weaning (at 3 to 75 days of age) in a completely randomized design with four treatments and 10 replicates. Experimental treatments were i) a starter diet with no fat source (control), ii) a starter diet with coconut oil containing saturated fatty acids (2% of the diet), iii) a starter diet with flaxseed oil containing linoleic acid (2% of the diet), and iv) a starter diet plus safflower oil containing linoleic acid (2% of the diet). Calf performance was evaluated weekly and feces were examined daily. Rumen parameters (volatile fatty acids and pH), blood parameters (glucose, protein, urea and cholesterol) and immune response (white and red blood cells and immunoglobulin G) were assessed at the end of the trial. The findings indicate that the safflower oil treatment exhibited the highest feed intake after a duration of 10 weeks, with a statistically significant difference observed when compared to the control treatment (p &lt; 0.05). The highest weight gain of calves fed diets containing unsaturated fats was observed in the 8th, 9th and 10th weeks, which was significantly higher than in the control and treatment containing coconut oil (p &lt; 0.05). The height of experimental calves was affected by fats, except in the 1st and 2nd weeks. The experimental treatments did not yield statistically significant differences in fecal scores throughout the duration of the study (p &gt; 0.05). Additionally, the influence of the experimental treatments was not significantly correlated with the pH levels of the calves' rumen fluid during the experimental period. However, the total volatile fatty acid concentration was significantly influenced by the treatment at the conclusion of the experimental period (p &lt; 0.01). Furthermore, the blood parameters, including glucose, protein, and urea levels, as well as the counts of red blood cells and immunoglobulin G in the calves, were significantly affected by the treatment (p &lt; 0.05). The findings of this study indicate that the incorporation of various fat sources, particularly those rich in unsaturated fatty acids such as linoleic and linolenic acid, in the starter diet of female Holstein calves significantly enhanced growth performance, immune response, and rumen/blood parameters when compared to the other experimental groups.
DOI: 10.4231/r7930r4c
title: Ortho-Rectified UAS Mosaic Air Photo of Staged Crash Scene at S-BRITE

description: &lt;p&gt;The image archived in this record was constructed from 189 images recorded on a GoPro Hero 3+ Black Edition camera mounted on a Phantom 2 (FA3E9FY4HA) on February 11, 2017. The red scale bar in this image is 15 ft, with three 5 ft divisions. These images were taken at the Purdue Center for Aging Infrastructure (&lt;a href="https://engineering.purdue.edu/CAI/SBRITE/Facilities"&gt;CAI&lt;/a&gt;) facilities just south of the Purdue Airport (KLAF) at approximately latitude 40.408709, longitude -86.949142. A NOTAM was filed and operations were coordinated with the Purdue Airport Tower. A PDF of that NOTAM is attached. The procedures for constructing the mosaic image are documented in the following publications:&lt;/p&gt;

&lt;ul&gt;
 &lt;li&gt;He, F., &amp; Habib, A. (2016). Automated relative orientation of UAV-based imagery in the presence of prior information for the flight trajectory. &lt;em&gt;Photogrammetric Engineering &amp; Remote Sensing&lt;/em&gt;, &lt;em&gt;82&lt;/em&gt;(11), 879&ndash;891. &lt;a href="http://dx.doi.org/10.14358/PERS.82.11.879"&gt;http://dx.doi.org/10.14358/PERS.82.11.879&lt;/a&gt;&lt;/li&gt;
 &lt;li&gt;Al-Rawabdeh, A., He, F., Mousaa, A., El-Sheimy, N., &amp; Habib, A. (2016). Using an unmanned aerial vehicle-based digital imaging system to derive a 3D point cloud for landslide scarp recognition. &lt;em&gt;Remote Sensing&lt;/em&gt;, &lt;em&gt;8&lt;/em&gt;(2), 95. &lt;a href="http://dx.doi.org/10.3390/rs8020095"&gt;http://dx.doi.org/10.3390/rs8020095&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
description: UAS images collected on February 11, 2017, adjacent to the Purdue Campus. Additional details are provided in the description below.
DOI: 10.5067/icfvi7dkhzjv
title: MEaSUREs ITS_LIVE Greenland Ice Sheet Elevation and Mass Change, Version 1