cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xrr3gxdkjy.3
title: Les étudiants de l'INSPE de Martinique et le confinement (COVID-19)

description: Questionnaire sur les conditions matérielles, sociales et socioéconomiques pour la formation à distance des étudiants de l'Institut national supérieur du professorat et de l'éducation (INSPE) pendant la période de confinement (mars-juin 2020). 22 questions. Questionnaire on material, social and socio-economic conditions for distance education for students of the Institut national supérieur du professorat et de l'éducation during the period of lockdown (March-June 2020). 22 questions.
DOI: 10.5281/zenodo.3572400
title: Tumor growth kinetics of subcutaneously implanted Lewis Lung carcinoma cells

description: <strong>Please cite</strong><br> Benzekry, S., Lamont, C., Beheshti, A., Tracz, A., Ebos, J. M. L., Hlatky, L., & Hahnfeldt, P. (2014). Classical mathematical models for description and prediction of experimental tumor growth. <em>PLoS Computational Biology</em>, <em>10</em>(8), e1003800. http://doi.org/10.1371/journal.pcbi.1003800 <strong>Cell culture</strong><br> Murine Lewis lung carcinoma (LLC) cells, originally derived from a spontaneous tumor in a C57BL/6 mouse [1], were obtained from American Type Culture Collection (Manassas, VA). <strong>Tumor injections</strong><br> For the subcutaneous mouse syngeneic lung tumor model, C57BL/6 male mice with an average lifespan of 878 days were used [2]. At time of injection mice were 6 to 8 weeks old (Jackson Laboratory, Bar Harbor, Maine). Subcutaneous injections of 10<sup>6</sup> LLC cells in 0.2 ml phosphate-buffered saline (PBS) were performed on the caudal half of the back in anesthetized mice. <strong>Tumor measurements</strong><br> Tumor size was measured regularly with calipers to a maximum of 1.5 cm<sup>3</sup> for the lung data set. Largest (L) and smallest (w) diameters were measured subcutaneously using calipers and the formula V = \(\frac{\pi}{6}w^2 L\) was then used to compute the volume (ellipsoid). Volumes ranged 14–1492 mm<sup>3</sup> over time spans from 4 to 22 days for the lung tumor model (two experiments of 10 animals each). [1] Bertram JS, Janik P (1980) Establishment of a cloned line of Lewis Lung Carcinoma cells adapted to cell culture. Cancer Lett 11: 63–73. Available: http://www.ncbi.nlm.nih.gov/pubmed/7226139. Accessed 9 July 2013. [2] Kunstyr I, Leuenberger HG (1975) Gerontological data of C57BL/6J mice. I. Sex differences in survival curves. J Gerontol 30: 157–162. Available: http:// www.ncbi.nlm.nih.gov/pubmed/1123533. Accessed 9 July 2013.
description: {"references": ["Benzekry, S., Lamont, C., Beheshti, A., Tracz, A., Ebos, J. M. L., Hlatky, L., & Hahnfeldt, P. (2014). Classical mathematical models for description and prediction of experimental tumor growth. PLoS Computational Biology, 10(8), e1003800.", "Vaghi, C., Rodallec, A., Fanciullino, R., Ciccolini, J., Mochel, J. P., Mastri, M., Poignar, C., Ebos, J. ML & Benzekry, S. (2020). Population modeling of tumor growth curves and the reduced Gompertz model improve prediction of the age of experimental tumors. PLoS Computational Biology, 16(2), e1007178."]}
DOI: 10.17632/4fgp25nbzm.1
title: Data for: Deuterium retention in tungsten studied by combined in-situ ion beam analysis and thermal desorption spectroscopy

description: in-situ ion beam analysis data of deuterium retention in tungsten during stepwise and continuous annealing.
DOI: 10.17632/kbntsj3fm5.2
title: Tables accompanying the manuscript "Accuracy validation and comparison of DEMs over western Argentina" sent to BCG, June 2020.

description: DEM validation and accuracy assessment with ground control benchmarks
DOI: 10.17632/kbntsj3fm5.3
title: Tables accompanying the manuscript "Accuracy validation and comparison of DEMs over western Argentina" sent to BCG, June 2020.

description: DEM validation and accuracy assessment with ground control benchmarks
DOI: 10.17632/pmk59x4hvc.1
title: Pressure Peaking Phenomena: Unignited hydrogen releases in confined spaces – large-scale experiments

description: The pressure peaking phenomenon was investigated using large-scale experiments. The experimental setup was sealed, assuring a constant ventilation area. The hydrogen inflow and data from a pressure transmitter and hydrogen concentration sensors were measured continuously during the experiments. The data are included in the model described in the paper Pressure Peaking Phenomena: Unignited hydrogen releases in confined spaces – large-scale experiments. In the docx. file: "File's description" the explanation of the raw data is presented.
DOI: 10.5281/zenodo.3903114
title: 基于系统模型的用户评论中非功能需求的自动分类

description: 以下是“基于系统模型的用户评论中非功能需求的自动分类 ”文献提供的数据包.包含本研究使用的数据集(供其他研究人员使用).同时, 我们提供了对数据集进行描述的文件. <strong>1. Dataset文件夹</strong> <em>dataset_user_reviews.xlsx</em>文件包含1278条已经分类的非功能需求用户评论:行为型需求和表示型需求. <em>readme.txt</em> 文件详细描述了<em>dataset_user_reviews.xlsx</em> 中各列数据的含义.
DOI: 10.17632/6xwfm36sg8.1
title: Repository NorthernAfrica-EN (Google KeywordPlanner)

description: This is a list of keywords generated by Keyword Planner set to English and Northern African countries
DOI: 10.17632/6z4fvrspt3.1
title: Striosomes Mediate Value-based Learning Vulnerable in Aging and Huntington’s Disease Model. Friedman, Hueske et al. 1

description: Data set 1/3
DOI: 10.17632/9hmz589r7g.1
title: Utilising CoDA methods for the spatio-temporal geochemical characterisation of groundwater; a case study from Lisheen Mine, south central Ireland (Datasets and Supplementary Materials).

description: This data was used as part of a case study that examines the use of Compositional Data Analysis (CoDA) for spatio-temporal geochemical characterisation. The primary data file (GroundwaterGeochemistryData.csv) describes the results of geochemical analysis of groundwater from 8 wells over a 12 month period in the area of Lisheen Mine, south-central Ireland. The subsequent data treatment process (R_CodeForDataTreatment.R) allows for the original dataset to be compatible with CoDA.
DOI: 10.17632/cwvgxbvw4f.1
title: Data For: Stochastic home health care routing and scheduling problem with multiple synchronized services

description: The test instances have been randomly generated using the benchmark instances from Mankowska et al. (2014). Two sets of instances are generated; single services SS and multiple synchronized services MSS, each one contains 3 subsets with different sizes.
DOI: 10.17632/6r6d39rs7j.1
title: Striosomes Mediate Value-based Learning Vulnerable in Aging and Huntington’s Disease Model. Friedman, Hueske et al. 2

description: Data set 2/3 For a full list of contributors see data set 1/3.
DOI: 10.17632/3xdtk8gdbd.1
title: Striosomes Mediate Value-based Learning Vulnerable in Aging and Huntington’s Disease Model. Friedman, Hueske et al. 3

description: Data set 3/3 For a full list of contributors see data set 1/3.
DOI: 10.17632/ckj5p6tjyk.3
title: TIRF Microscopy Image Sequences of Fluorescent IgE-FcεRI inside a FcεRI-Centric Synapse in RBL-2H3 Cells Dataset

description: Total internal reflection fluorescence (TIRF) microscopy was used to image the IgE-FcεRI receptor signaling complex in rat basophilic leukemia (RBL-2H3) cells coming into contact with a supported lipid bilayer, modeling an immunological model synapse. Fluorescent immunoglobulin E (IgE488) concentrations ranged from 10% to 100%, in 10% increments and IgEdark that decreased from 90% to 0% by increments of 10%. To label, the IgE488 and IgEdark were added to the RBL-2H3 cells in suspension the day prior to imaging and allowed to incubate overnight. Immediately before experimental data was taken, cells were removed from the suspension dish and resuspended in Hank’s buffer. Cells of Sample 1 were kept in Hank’s buffer for a few minutes before cells were added to the SLB. Cells from Sample 2 were kept in Hank’s buffer for about half an hour before cells were added to the SLB. Cells from Sample 3 were kept in Hank’s buffer for about one hour before cells were added to the SLB. Multiple image sequenceswere taken for each of these ten conditions with camera exposure of 5 ms per image and pixel size of 107nm. The fluorescent labeling efficiency of IgE488 was 1.02 ± 0.08 mole fluorescent dye per mole protein. The dataset contains corresponding dark images and TIRF illumination profile images. The camera gain g was 0.006 photo electrons/ADU and the readout noise Nread was 0.529 photo electrons. The data are provided as OME-TIFF (.ome.tif), a life sciences file format. Information about the OME-TIFF (.ome.tif) file format information as well as imaging software supporting it can be found here: https://docs.openmicroscopy.org/ome-model/5.6.3/ome-tiff/
DOI: 10.17632/7hwcgcvssw.1
title: Plant species in Sierra de Quilmes (2018)

description: We assessed the patterns of plant species diversity along an altitudinal gradient in Sierra de Quilmes (-66.1130 -26.5042, -65.9421 -26.3293, CRS: WGS84, Argentina Monte Desert - Tucumán Province).
DOI: 10.17632/9xvf3ph6bt.2
title: Landing Signalman gesture recognition dataset

description: These two gesture datasets are from the Computer & Graphics Journal submitted article: "Helicopter visual signaling simulation: Integrating VR and ML into a low-cost solution to optimize Brazilian Navy training". Both files have 17 helicopter visual signals using two hands, and each gesture was performed 25 times. They were created using MiVRy – 3D Gesture Recognition at Unity environment. They contain the raw relative positions of each gesture sample, the neural network itself, and the metadata. File “HVSS_gest_contr.dat” was recorded using VIVE(TM) controllers, for the virtual nighttime environment, and “HVSS_gest_tracker.dat” using VIVETM Tracker wrist-mounted, for the virtual daytime environment. The gestures are illustrated and explained according to "'Landing Signalman dataset.pdf".
DOI: 10.17632/b3n53j747h.1
title: Spatial input data for computing air-taxi flight routes in restricted and protected air spaces in New Yerk City (USA)

description: The data set contains spatial data, which can be used for computing or optimizing flight routes for air taxis in New York City. The input data consists of: 1. Transportation noise map (transport_noise.tif) The transport noise was downloaded from the U.S. transport department, is called "National Transportation Noise Map, 2014". The only adjustment was, that the raster file was clipped to the study area of New York city. 2. 3D restricted and protected air space (restricted_and_protected_airspace_point_boundary.shp and restricted_airspace_point_boundary.shp) Shapefiles from OpenStreetMap containing land usages, shapefiles from Open Data New York containing roof top heights and airport flight corridors combined were used to generate the 3D geofences. Restricted air spaces are protected by law (e.g. areas close to airports) and protected air spaces (e.g. schools, hospitals) are derived by computing buffers with assigned buffer-distances depending on the land use on the ground. 3. Least flight height surface (least_flight_height_surface.tif) This raster file describes the minimal allowed flight height at each position relative to the ground/rootops at the ground. It also includes the rasterized 3D geofences. 4. Example flight route (example_flight_route.shp) This shapefile contains an exemplary flight route, which minimizes the accumulated distance between the two end points. All data can be opened with any Geographical Information System, for example ArcGIS (Esri) or the Open Source Version QGIS . The coordinate system for all data is: NAD 1983 StatePlane New York Long Isl FIPS 3104 (Meters).
DOI: 10.17632/dpkbh2g9hy.1
title: The Global Phosphorylation Landscape of SARS-CoV-2 Infection. Bouhaddou et al., 2020.

description: The causative agent of the coronavirus disease 2019 (COVID-19) pandemic, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has infected millions and killed hundreds of thousands of people worldwide, highlighting an urgent need to develop antiviral therapies. Here, we present a quantitative mass spectrometry- based phosphoproteomics survey of SARS-CoV-2 infection in Vero E6 cells, revealing dramatic rewiring of phosphorylation on host and viral proteins. SARS-CoV-2 infection promoted casein kinase II (CK2) and p38 MAP kinase activation, production of diverse cytokines, and shutdown of mitotic kinases resulting in cell cycle arrest. Infection also stimulated a marked induction of CK2-containing filopodia protrusions possessing budding viral particles. Eighty-seven drugs and compounds were identified by mapping global phosphorylation profiles to dysregulated kinases and pathways. We found pharmacologic inhibition of p38, CK2, CDKs, AXL and PIKFYVE kinases to possess antiviral efficacy, representing potential COVID-19 therapies.
DOI: 10.17632/2j354jtddx.1
title: Dataset to estimate biomass and carbon stocks in ecotone forests on the eastern of Maracá Island, northern Brazilian Amazon

description: The dataset provides information on biomass / carbon estimates for the ecotone forests dispersed on the eastern region of the Maracá Ecological Station; a Brazilian protected area formed by Maracá Island and islets (hereafter “Maracá”) located on the Rio Uraricoera, State of Roraima, northern Brazilian Amazon. The carbon in above-ground total biomass (AGB) was estimated based on data from the 4th “tree+palm” census (https://data.mendeley.com/datasets/8cdwkhcsy7/2) carried out in 129 permanent plots (50 mx 10 m; 6.45 ha) installed on the six East-West trails in the PPBio research grid installed in Maracá (https://ppbio.inpa.gov.br/sitios/maraca). A general allometric model (Chave et al., 2014) was adopted for estimate AGB for each tree in the database. The palms biomass was performed at the gender level using the allometric models of Goodman et al. (2013). The individual carbon was calculated multiplying the biomass of each tree/palm by a factor of 0.5 (considering 50% of C). The individuals carbon values were used to compose the total carbon stock in each plot taking into account three arboreal classes: (i) P. gracilipes (Leguminosae tree species with higher abundance in the region), (ii) others (all other tree species) and (iii) palms (a set of five arborescent species). The dataset consists of three files: (i) study_site - a figure indicating the geographical location of the study area; (ii) location_plot - identification of the sampling plots (unique code) and their geographical location in (i) lat / long - WGS84 and (ii) UTM / Zone 20 N, WGS 84; (iii) biomass_carbon - biomass and carbon stocks of P. gracilipes, others and palm trees (Mg / 500m² and % of each arboreal class). The current dataset was supported by the projects (i) SavFloRR - Ecologia e manejo dos recursos naturais de ecossistemas de savanas e florestas de Roraima (PPI INPA 015/122), and (ii) Crescimento e mortalidade de árvores em florestas ecotonais de Roraima: efeito das condicionantes ambientais e da variabilidade climática (Proc. CNPq n. 403591 / 2016-3). The Coordination for the Improvement of Higher Education Personnel (CAPES) supported E.H.S. The PELD Program provide a scholarship to W.R.S. (CNPq / CAPES / FAPs / BC-Fundo Newton; Proc. N. 441575 / 2016-1). The National Council Scientific and Technological Development (CNPq) provided a grant to R.I. Barbosa (CNPq 304204 / 2015-3). The Chico Mendes Institute for Biodiversity Conservation (ICMBio) authorized the study (SISBIO nº 52071).
DOI: 10.17632/tg765zz76x.2
title: Data: The Contributions of Childhood Vaccination Misconceptions to the Evaluation and Sharing of Information from Multiple Internet Texts

description: The current work was conducted to better understand the influences of source presence and individual differences on evaluating and sharing information from multiple conflicting Internet texts about childhood vaccinations. The results indicate that college student readers appeared to be insensitive to a source availability manipulation. However, their preexisting beliefs, specifically in terms of their misconceptions regarding childhood vaccinations, appeared to be detrimental to their online information sharing proclivities. In particular, readers with misconceptions about childhood vaccinations were more likely to include inaccurate concepts when writing an essay to share information with a friend. Additionally, readers with misconceptions were less able to distinguish more from less credible information, as evidenced by their inability to appropriately rank-order the Internet in terms of reliability. The patterns suggest that readers with misconception-based beliefs may be at risk for misinforming others after reading multiple conflicting texts on the Internet. Limitations and future directions of the current work are discussed.These materials are not to be redistributed or repurposed without permission from the author (Erica Kessler: dgrisham@memphis.edu).
DOI: 10.17632/xcggh9cvwv.2
title: Evidence for deep processes from Miocene potassic rock: dynamic subsidence and uplift of India-Asia Suture Zone

description: U-Pb dating results, trace element and Hf isotopic compositions for zorcons of the Saga potassic magmatic rocks within the India-Asia Suture Zone (Table S1, S2, S3, respectively); Compiled zircon U-Pb ages and Hf isotopic compositions in the Southern Tibetan Plateau (Table S4); Major and trace elements for garnets of the Saga potassic magmatic rocks within the India-Asia Suture Zone (Table S5).
DOI: 10.17632/2bk7xdsgg9.1
title: Referential form and particle choice in Korean

description: Data for the paper "Referential form and particle choice in Korean"
DOI: 10.17632/tp48f8tc5j.3
title: Research data for paper titled "Magnetic difference between deep and surface soil within an agricultural area South China: Implications for magnetic mineral transformation during pedogenic process under subtropical climate"

description: This dataset includes all original data used in this paper. It includes several worksheets: Magnetic & geo_Surface soil, Magnetic & geo_Deep soil, k_T curves, IRM and backfield curves, Hysteresis parameters, and IRM parameters. Data within the first two worksheets (Magnetic property_Surface soil and Magnetic property_Deep soil) are used for Figure 2 of the paper. Data in worksheets ( k_T curves, IRM and backfield curves) are used for Figure 3 of the paper. Data in worksheet Hysteresis parameters are used for Figure 4c of the paper. Data in worksheet (IRM parameters) are used for Figure 6 of the paper.
DOI: 10.17632/g83593d5jc.4
title: Relationships between slope gradients and types of deposition on the four guyots

description: custs01.csv for CS;Rock01.csv for exposed rock; sand01 for loose sediment; TS.csv for tansition zone sediments. A detailed description will published as a paper. This show that different deposition on seamount slopes corresponding to different slope gradient.
DOI: 10.17632/tp48f8tc5j.4
title: Research data for paper titled "Magnetic difference between deep and surface soil within an agricultural area South China: Implications for magnetic mineral transformation during pedogenic process under subtropical climate"

description: This dataset includes all original data used in this paper. It includes several worksheets: Magnetic & geo_Surface soil, Magnetic & geo_Deep soil, k_T curves, IRM and backfield curves, Hysteresis parameters, and IRM parameters. Data within the first two worksheets (Magnetic property_Surface soil and Magnetic property_Deep soil) are used for Figure 2 of the paper. Data in worksheets ( k_T curves, IRM and backfield curves) are used for Figure 3 of the paper. Data in worksheet Hysteresis parameters are used for Figure 4c of the paper. Data in worksheet (IRM parameters) are used for Figure 6 of the paper.
DOI: 10.17632/23jzxbnknf.1
title: Kelvin-Helmholtz billow intensity determines effect on pelagic ecosystems in the Kuroshio

description: Echo sounder images revealed weak and strong Kelvin-Helmholtz (KH) billow conditions produced over a seamount along the Kuroshio in two separate surveys. This dataset includes CTD information, and chlorophyll a and nitrate profiles used for the analyses needed to describe the effects of varying KH billow intensities on pelagic ecosystems in the Kuroshio. Vertical profiles of temperature, nitrates and chlorophyll a were plotted, using Surfer 13, for a time-series survey over K seamount and along two transects surveyed during each cruise. KH billows in the ocean appear to contribute to the vertical transport of nutrients, which promotes chlorophyll a production. Shallow billows, regardless of vertical scale seem to contribute to subsurface chlorophyll production by entrainment of ambient dissolved inorganic nutrients. Deeper billows, on the other hand, have a more direct role in resuspending materials from the seafloor.
DOI: 10.17632/65v6bff7bm.1
title: MOLECULAR-CELL-D-20-00113 "Structural insights into pseudokinase domains of receptor tyrosine kinases" Sheetz et al.

description: Figure 5A: Expression of ROR1 and ROR1∆ICR in BaF3 stable clones by anti-HA Western blot (with beta-tubulin as loading control). Figure 5C: Wnt5a stimulation increases phosphorylation of AKT/ERK and SRC signaling in BaF3-ROR1 cells. BaF3, BaF3-ROR1 and BaF3-ROR1∆ICR cells were serum starved overnight, and then treated with recombinant Wnt5a (50 ng/ml) for the indicated times. Cell lysates were then immunoblotted with the indicated antibodies. ROR1 or ROR1∆ICR protein levels were determined using anti-HA blotting. Figure 5E: Assessment of stable BaF3 clones expressing (HA-tagged) wild-type ROR1, a variant with the YxxxYY motif in the activation loop mutated to FxxxFF (Y641F/Y645F/Y646F), and a K506A-mutated variant by Western blotting with anti-HA and beta-tubulin as loading control. Figure 6D: Cellular thermal shift assay (CETSA) demonstrating stabilization of ROR1 in cells upon addition of ponatinib or GZD824. BaF3-ROR1 cells were treated with 10 uM ponatinib or GZD824, and subjected to the noted temperatures as described in STAR Methods. Cell lysates were blotted with anti-HA to assess ROR1 levels, and with anti-beta-tubulin as a loading control. Figure S5A: BaF3 parental and BaF3-ROR1, BaF3-ROR2 and BaF3-PTK7 stable clones were analyzed for expression of ROR1, ROR2 and PTK7 by Western blotting with the indicated antibodies and beta-tubulin as loading control. Figure S5C: Wnt5a stimulation increases phosphorylation of ERK in BaF3-ROR1, but not BaF3-ROR2 cells. Experiments were performed as described for Fig. 5C, with 50 ng/ml Wnt5a, and determination of ROR1 and ROR2 protein levels using anti-HA blotting. Figure S6A: Representative Western blots showing stabilization of ROR1 expressed in BaF3 cells by increasing doses of ponatinib or GZD824. Cells were incubated at 48˚C as described in STAR Methods prior to immunoblotting to quantitate remaining non-degraded protein. Figure S7D: Adding ponatinib or GZD824 at 1 uM to BaF3 cells expressing full-length ROR1 inhibits the Wnt5a-dependent increases in ERK, AKT, and SRC phosphorylation shown in Fig. 5C. Cells were stimulated with 50 ng/ml Wnt5a for 0, 0.5, 2, or 4 h in the absence or presence of the inhibitors. Cell lysates were then blotted with anti-ROR1 (to assess total ROR1 levels), and with anti-pERK, anti-ERK, anti-pAKT, anti-AKT, and anti-beta-tubulin (as a loading control) as described in STAR Methods.
DOI: 10.17632/f2ydwz75nh.1
title: Dataset for the the manuscript entitled "Impact of problem formulations, pipe selection methods and optimization algorithms on the rehabilitation of large-scale water distribution systems"

description: This dataset includes all the relevant data presented in the manuscript entitled "Impact of problem formulations, pipe selection methods and optimization algorithms on the rehabilitation of large-scale water distribution systems". This manuscript is submitted to the Associate Editor Special Issue in the Journal of Water Supply: Research and Technology – AQUA. Its new name, AQUA – Water Infrastructure, Ecosystems and Society, will take effect from 2021.