cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wz5g24
title: Occurrence Download

description: A dataset containing 378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((15.62849 37.7004,15.62849 38.09375,15.87773 38.61493,15.29619 39.66732,14.1608 39.62467,12.88695 39.43244,11.69617 38.72304,11.36386 37.89734,11.28079 37.19475,11.55771 36.32954,11.86233 35.54481,12.16694 34.57009,12.94233 34.18154,13.33003 34.54728,13.21926 36.21792,14.05003 36.26259,15.32388 36.35185,15.62849 37.7004))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Unio, Cerambyx cerdo, Hirudo, Morimus asper, Osmoderma, Rosalia, Rosalia, Euplagia, Euplagia quadripunctaria tkatshukovi, Callimorpha, Parnassius, Proserpinus, Proserpinus proserpina, Zerynthia, Zerynthia, Cordulegaster trinacriae, Lindenia, Brachytrupes, Myrmecophilus baronii, Saga pedo)"
 ]
}

 The dataset includes 378 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007634-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v2anyg
title: Occurrence Download

description: A dataset containing 5705890 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sudan, South Sudan, Madagascar, Chad, Central African Republic, Congo, Democratic Republic of the, Congo)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5705890 records from 2956 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007578-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.575e8a
title: Occurrence Download

description: A dataset containing 390 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acerodon jubatus (Eschscholtz, 1831)"
 ]
}

 The dataset includes 390 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001566-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15558724
title: 증명 업적
DOI: 10.5281/zenodo.15558725
title: 증명 업적
DOI: 10.7272/q6sj1hsm
title: Prehospital midazolam use and outcomes among patients with out-of-hospital status epilepticus

description: Objective: To examine the use of benzodiazepines and the association
 between low benzodiazepine dose, breakthrough seizures, and respiratory
 support in patients with status epilepticus. Methods: Cross-sectional
 analysis of adult patients with status epilepticus treated by an emergency
 medical services (EMS) agency from 2013 to 2018. The primary outcome was
 treatment with a second benzodiazepine dose, an indicator for breakthrough
 seizure. The secondary outcome was receiving respiratory support.
 Midazolam was the only benzodiazepine administered. Results: Among 2,494
 cases of status epilepticus, mean age was 54.0 years and 1,146 (46%) were
 female. There were 1,537 patients given midazolam at any dose, yielding an
 administration rate of 62%. No patients received a dose and route
 consistent with national guidelines. Rescue therapy with a second
 midazolam dose was required in 282 (18%) patients. Higher midazolam doses
 were associated with lower odds of rescue therapy (OR 0.8, 95% CI 0.7-0.9)
 and were not associated with increased respiratory support. If anything,
 higher doses of midazolam were associated with decreased need for
 respiratory support after adjustment (OR 0.9, 95% CI 0.8-1.0).
 Conclusions: An overwhelming majority of patients with status epilepticus
 did not receive evidence-based benzodiazepine treatment. Higher midazolam
 doses were associated with reduced use of rescue therapy and there was no
 evidence of respiratory harm suggesting that benzodiazepines are withheld
 without clinical benefit. Classification of Evidence: This study provides
 Class III evidence that for patients with status epilepticus, higher doses
 of midazolam led to a reduced use of rescue therapy without an increased
 need for ventilatory support.
description: A subset of patients treated by emergency medical
 services have duplicate records for the same patient encounter.
 This occurrs when there is a separate evaluation and transport
 team dispatched and each team documents their encounter. We identified
 duplicate or triplicate records in our dataset. To consolidate information
 into a single record, we developed an algorithm for abstracting data based
 on sub-analysis of these files and describe the analysis with this
 document.
DOI: 10.7272/q6ns0s3r
title: Detailed emergency medical services midazolam administration by dose and route

description: This is a table describing the use of midazolam in the treatment of
 out-of-hospital status epilepticus at a local EMS agency. Specifically, it
 calculates the frequency of cases where
 intramuscular, intranasal, intraosseous,
 or intravenous midazolam is administered and stratifies
 these frequencies by dose.
description: These data were collected through the prehospital electronic
 medical record.
DOI: 10.5061/dryad.x69p8czfr
title: Data for: Drainage reduces the resilience of a boreal peatland

description: Drier conditions caused by drainage for infrastructure development, or
 associated with global climate warming, may test the resilience of
 carbon-rich northern peatlands. Feedbacks among biological and
 hydrological processes maintain the long-term stability of peatlands, but
 if hydrological thresholds are passed, these feedbacks may be weakened,
 causing a shift in ecosystem state and potentially large losses of carbon
 (C). To determine peatland response to hydrological change, we examined
 the structure (vegetation composition and hydrology) and biogeochemical
 function (carbon dioxide exchange) of a pristine bog and a bog subject to
 ~7 years localised drainage (caused by regional groundwater drawdown due
 to mine dewatering) in the Hudson Bay Lowland, Canada. Water tables at the
 drained bog were ~1 m below the hummock surface at the time of study
 compared to ~0.3 m at the pristine bog. For hummocks and intermediate
 microforms at the drained bog, plant production was significantly less
 than at the pristine bog, most likely due to small changes in vegetation
 structure (reduced Sphagnum cover and smaller shrub leaf:stem ratios)
 caused by deeper water tables and significantly reduced moisture content
 of surface peat. Despite these changes in vegetation and hydrology, net
 ecosystem production (NEP) remained positive (C sink) for these microforms
 at the drained bog. Dry pools with mostly bare peat at the drained bog had
 negative NEP (C source to atmosphere), in stark contrast to Sphagnum- and
 sedge-dominated pools at the pristine bog with small but positive NEP. Our
 study shows that dry pools now occupy an unstable state, but the
 hydrological thresholds for a shift in ecosystem state have not yet been
 reached for hummocks and intermediate microforms at the drained bog.
 However, weak or no relationships between water table depth, peat surface
 moisture content, and plant production for these microforms at the drained
 bog, suggest that drainage has weakened the hydrological feedbacks
 regulating peat production, causing peat accumulation to slow. If drier
 conditions prevail, this reduced resilience increases the potential for a
 shift in ecosystem state and raises the risk of large C loss due to
 continued decomposition of deeper peat in oxic conditions, and wildfire.
DOI: 10.5061/dryad.cc2fqz641
title: Simulations of magnetized quark nugget dark matter in three-layer witness plate

description: Magnetized quark nuggets (MQNs) are a recently proposed dark-matter
 candidate consistent with the Standard Model and with Tatsumi’s theory of
 quark-nugget cores in magnetars. Previous publications have covered their
 formation in the early universe, aggregation into a broad mass
 distribution before they can decay by the weak force, interaction with
 normal matter through their magnetopause, and first observation consistent
 MQNs: a nearly tangential impact limiting their surface-magnetic-field
 parameter Bo from Tatsumi’s ~1012+/-1 T to 1.65 × 1012 T +/- 21%. The MQN
 mass distribution and interaction cross section depend strongly on Bo.
 Their magnetopause is much larger than their geometric dimensions and can
 cause sufficient energy deposition to form non-meteorite craters, which
 are reported approximately annually. We report computer simulations of the
 MQN energy deposition in water-saturated peat, soft-sediments, and granite
 and report results from excavating such a crater. Five points of agreement
 between observations and hydrodynamic simulations of an MQN impact support
 this seocnd observation consistent with MQN dark matter and suggest a
 method for qualifying additional MQN events. The results also redundantly
 constrain Bo to ≥ 4 × 1011 T.   This dataset provides movies of
 CTH hydrodynamic simulations of a magnetized quark nugget dark matter
 transiting a three-layer witness plate of peat bog, soft sediments, and
 granite for energy/length of 1, 3, 9, 27, 81, and 243 MJ/m. The
 simulations, movies, and photos are explained in the paper titled
 Results of search for magnetized quark-nugget dark matter from radial
 impacts on Earth by J. Pace VanDevender, Robert G.
 Schmitt, Niall McGinley, Aaron P. VanDevender, Peter Wilson, Deborah
 Dixon, Helen Auer, and Jacquelyn McRae. The paper has been submitted for
 publication in the open-source journal Universe.
description: CTH hydrodynamic simulations processed into movies.
description: Movies of the pressure, temperature, and density from simulaton
 of a magnetized quark nugget depositing 1, 3, 9, 27, 81, or 243 MJ/m in a
 three-layer witness plate of water-saturated peat, water saturated soft
 sediments, and granite. Units are CGS except Temperature is in eV. This
 simulates the crater and subsurface interations in a May 1985 impact in
 County Donegal, Ireland. Each file is names by
 parameter_energy-density, e.g. Pressure_81MJ_per_meter.
DOI: 10.5061/dryad.wstqjq2hq
title: Genome annotation of humpback grouper (Cromileptes altivelis)

description:          Humpback grouper (Cromileptes altivelis), an Epinephelidae species, is patchily distributed in reef habitats of Western Pacific water. This grouper possesses a remarkably different body shape and notably low growth rates compared to closely related grouper species. Up to now, the evolutionary status of humpback grouper is ambiguous in grouper species. In order to promote further research of the grouper, in the present study, a high-quality chromosome-level genome of humpback grouper was assembled using PacBio sequencing and high-throughput chromatin conformation capture (Hi-C) technology.
description: Repetitive regions of the wild humpback grouper genome were
 identified by de novo and homology prediction. Transposable elements (TEs)
 were identified using LTR Finder version 1.05
 (http://tlife.fudan.edu.cn/tlife/ltr_finder/), RepeatScout v1.0.5
 (http://www.repeatmasker.org), and PILER v1.0. The TEs were classified and
 annotated using PASTEClassifier version 1.0 using TEdenovo pipeline.
 Protein-coding genes were predicted using three methods i.e., de novo
 prediction, homologous sequences prediction and RNA-seq assisted methods.
 For de novo prediction, the genome without repeat regions was applied to
 generate gene structures using Genscan, Augustus version 2.4, GlimmerHMM
 version 3.0.4, GeneID version 1.4, SNAP. A total of 1588,939 repeat
 sequences were predicted with 374.83 Mb, which account for 36.99% of
 genome of humpback grouper. In addition, a total of 26,037 protein-coding
 genes were predicted, among them 25,243 (96.95%) genes could be
 functionally annotated.
DOI: 10.5061/dryad.mgqnk98wz
title: Congruent geographic variation in saccular otolith shape across multiple species of African cichlids

description: The otoliths of teleost fishes exhibit a great deal of inter- and
 intra-species shape variation. The ecomorphology of the saccular otolith
 is often studied by comparing its shape across species and populations
 inhabiting a range of environments. However, formal tests are often
 lacking to examine how closely variation in otolith shape follows the
 genetic drift of a neutral trait. Here, we examine patterns of saccular
 otolith shape variation in four species of African cichlid fishes, each
 sampled from three field sites. All four species showed the greatest level
 of otolith shape variation along two principal component axes, one
 pertaining to otolith height and another to the prominence of an anterior
 notch. Fish collected from the same site possessed similarities in
 saccular otolith shape relative to fish from other sites, and these
 ‘site-difference’ signatures were consistent across species and observable
 in both sexes. Sex-differences in saccular otolith shape differed in
 magnitude from site to site. Population differences in saccular otolith
 shape did not covary with neutral genetic differentiation between those
 populations. Otolith height, in particular, displayed large site
 similarities across species, weak correlation with neutral genetic
 variation, and strong sex differences, collectively suggesting that
 otolith shape represents a selectively non-neutral trait.
description: Saccular otoliths and fin clips were sampled from both males and
 females (spanning a wide body size range) of four Lake Tanganyikan cichlid
 species (<em>Neolamprologus caudopunctatus, N. pulcher, N. savoryi,
 Variabilichromis moorii</em>) from three distinct field sites at the
 southern tip of the lake. Two-dimensional otolith shape was computed using
 elliptical Fourier shape analyses followed by principal component
 analysis. Neutral genetic population differentiation was estimated by
 sequencing, and quantifying variability in, the mitochondrial control
 region. Differences in otolith shape between populations were then
 compared to the degrees of neutral differentiation between those same
 population pairs (see Methods).
description: There are no missing values in these data sets (although any
 otoliths that were chipped or vateritic were not used in this study).
 Column names in the .csv files are self-explanatory (see
 Methods).
DOI: 10.5061/dryad.1g1jwstsc
title: Data from: Habitat deterioration promotes the evolution of direct development in metamorphosing species

description: Although metamorphosis is widespread in the animal kingdom, several
 species have evolved life cycle modifications to avoid complete
 metamorphosis. Some species, e.g., many salamanders and newts, have
 deleted the adult stage via a process called paedomorphosis. Others, e.g.,
 some frog species and marine invertebrates, no longer have a distinct
 larval stage and reach maturation via direct development. Here we study
 which ecological conditions can lead to the loss of metamorphosis via the
 evolution of direct development. To do so, we use size-structured
 consumer-resource models in conjunction with the adaptive-dynamics
 approach. In case the larval habitat deteriorates, individuals will
 produce larger offspring and in concert accelerate metamorphosis. While
 this leads to the evolutionary transition from metamorphosis to direct
 development when the adult habitat is highly favourable, the population
 will go extinct in case the adult habitat does not provide sufficient food
 in order to escape metamorphosis. With a phylogenetic approach we
 furthermore show that among amphibians the transition of metamorphosis to
 direct development is indeed, in line with model predictions, conditional
 on and preceded by the evolution of larger egg sizes.
description: <strong>BayesTraits_data_files</strong><br>
 This folder contains the data files used for the phylogenetic
 analysis 
 <strong>IBM_DirectDevelopment_code</strong><br>
 This folder contains the C++ code of the individual based model
 <strong>IBM_DirectDevelopment_Runs</strong><br>
 This folder contains the results of the IBM. For Fig
 B1 we used LowX2_p10_time.txt in the subfolder 'rep1'<br>
 For Fig B2 we used HighX2_p2_time.txt in the subfolder 'rep2'
 for the upper panels and HighX2_p1_time.txt in the subfolder
 'rep1' for the lower panels.   
 <strong>PSPM_DirectDevelopment</strong><br>
 This folder contains the header file and an R-script that can be used to
 calculate the results of the fat-reserves model. 
 <strong>PSPM_GenericModel.zip</strong><br> This
 folder contains the header file and an R-script that can be used to
 calculate the results of the generic size-structured model.
DOI: 10.5061/dryad.866t1g1nn
title: Extensive geographic variation in testes size and ejaculate traits in a terrestrial-breeding frog

description: Ejaculate traits vary extensively among individuals and species, but
 little is known about their variation among populations of the same
 species. Here, we investigated patterns of intraspecific variation in male
 reproductive investment in the terrestrial-breeding frog Pseudophryne
 guentheri. Like most anurans, breeding activity in P. guentheri is cued by
 precipitation, and therefore the timing and duration of breeding seasons
 differ among geographically separated populations, potentially leading to
 differences in the level of sperm competition. We therefore anticipated
 local adaptation in sperm traits that reflect these phenological
 differences among populations. Our analysis of six natural populations
 (two near the northern range edge and four central populations) revealed
 significant divergence in testes and ejaculate traits that correspond with
 latitude; males from the northern and dry edge of the species range had
 significantly smaller testes containing fewer, smaller and less motile
 sperm compared to those from the more mesic central populations. These
 findings may reflect spatial variation in the strength of postcopulatory
 sexual selection among populations, likely driven by local patterns of
 precipitation.
DOI: 10.5061/dryad.0cfxpnvzr
title: An enigmatic Neodiapsid reptile from the Middle Triassic of England

description: The fossil record of early diapsids is sparse, specimens are uncommon and
 often incomplete, and phylogenetic relationships are hard to determine. A
 new taxon of stem-group neodiapsid, Feralisaurus corami from the Middle
 Triassic of Devon, south-western England, is here named and described from
 an incomplete but mostly articulated skeleton, comprising skull,
 vertebrae, pectoral girdle, ribs and the right forelimb. CT scanning and
 the resultant 3D model of the skeleton reveal anatomical details otherwise
 buried in the sandstone matrix. This new genus is characterized by a
 plesiomorphically high maxilla without a prominent nasal process, a
 quadrate with a lateral conch, a low jugal with small posterior process,
 conical teeth with pleurodont implantation, a high coronoid process,
 notochordal vertebrae, a long humerus with an entepicondylar foramen,
 rod-like clavicles, a T-shaped interclavicle, and a ventrolateral process
 of the scapulocoracoid. Phylogenetic analyses, although showing
 generalized weak support, retrieved Feralisaurus within Neodiapsida or
 stem-group Lepidosauromorpha: its morphology supports the latter
 hypothesis. This specimen adds to our knowledge of the early
 diversification of Lepidosauromorpha and of English Middle Triassic
 terrestrial faunas.
DOI: 10.5061/dryad.w3r2280n7
title: Data from: No link between nymph and adult colouration in shield bugs: weak selection by predators

description: Many organisms use different anti-predator strategies throughout their
 life, but little is known about the reasons or implications of such
 changes. For years it has been suggested that selection by predators
 should favour uniformity in local warning signals. If this is the case, we
 would expect high resemblance in colour across life stages in aposematic
 animals where young and adults share similar morphology and habitat. In
 this study we used shield bugs (Hemiptera: Pentatomoidea) to test whether
 colour and colour diversity evolve similarly at different life stages.
 Since many of these bugs are considered to be aposematic, we also combined
 multi-species analyses with predation experiments on the cotton harlequin
 bug to test whether there is evidence of selection for uniformity in
 colour across life stages. Overall, we show that the diversity of colours
 used by both life stages is comparable, but adults are more cryptic than
 nymphs. We also demonstrate that nymphs and adults of the same species do
 not tend to look alike. Experiments on our model system suggest that
 predators can generalise among life stages that look different, and
 exhibit strong neophobia. Altogether, our results show no evidence of
 selection favouring colour similarity between adults and nymphs in this
 speciose clade. 
description: This dataset contains information on colour for different species
 of Pentatomoidea (shield bugs). It also contains results for experiments
 with chicks. Colour was collected from high quality
 photographs published in scientific articles or different websites. Three
 coordinates were collected for each colour, corresponding to the RGB
 channels (red, green and blue). For each species there is information on
 the nymphal colouration and the adult colouration.
 Chick experiments were done with naive chicks and details are
 presented in supplementary material.
description: Excel file colour: There are no missing values in the main
 dataset. Each row corresponds to a different colour, and there are
 multiple colour per species and life stage. The is a tab called metadata
 that explains the information in each column. We also include a tab that
 contains all the references were photographs were obtained from. In some
 cases photographs from websites were used, and we provide the scientific
 article that we used to make sure that the website had the correct nymph
 or adult description. R code to be used with the first tab of this dataset
 has been supplied, along with additional files. Excel
 file chick experiments: There are missing values from attack latencies for
 two videos. Other than that the dataset is complete and to be used with
 the associated R code on stats on chicks. We have also
 uploaded the phylogenetic tree files that were used in this
 project.  Please refer to READ ME file for details on
 all files uploaded.