cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6988994.v1
title: Dental homologies and evolutionary transformations in Caviomorpha (Hystricognathi, Rodentia): new data from the Paleogene of Peruvian Amazonia

description: Dental homologies and evolutionary transformations within caviomorph rodents have long been disputed. Here, we participate in these debates in providing new insights from the dental morphology of Paleogene caviomorphs from Peruvian Amazonia (Contamana and Shapaja). Their analyses and comparisons with many hystricognaths allow (1) to generalize some hypotheses previously proposed about occlusal morphology of caviomorph cheek teeth, and (2) to propose new ones. In caviomorphs, the third crest of upper teeth would correspond either to a mesoloph or to a mesolophule or to a combination of both. The transformation from a pentalophodont pattern to a tetralophodont pattern would be explained by the disappearance of the metaloph. Likewise, the transformation from a tetralophodont pattern to a trilophodont pattern is observed by the loss of the third crest. A direct transformation from a pentalophodont pattern to a trilophodont pattern is also observed. Concerning lower teeth, discrepancies of homologies are centered on the mesial cristids, which can be notably distinguished depending on their compositions and connections with other structures. The ancestral patterns of caviomorph lower molars and dp4s were likely tetralophodont and pentalophodont, respectively. However, schemes with five and four (even three) transverse cristids cannot be ruled out for the two loci, respectively.
DOI: 10.6084/m9.figshare.6988997.v2
title: RadISpeC program code (.m files and GUI for Matlab IDE)

description: Radiation: Interface for Matlab Spectroscopy Calculations (RadISpeC) is a program that use HITRAN/HITEMP data to generate Line-by-Line (LBL) spectra at a wanted spectral resolution and environment. These data can be used with Discrete Transfer Methods (DTM), Ray Tracing (RT) etc. solvers to estimate high precision radiation in heated flow problems. It was created as a part of the article "Experimental and theoretical evaluation of spectral radiative transfer in high-pressure flames" by Westly et. al. from 2019 (under review by Journal atm). This article also show how well the program is at simulating heated gas flows for CO2, H2O and CO compared to experimental results. The program contain all setups that was used for the article to use free of charge, as long as the program and article is cited. All functions have descriptions that explain how to use them and contain call methods. If a more detailed description of theory is wanted, check the RadISpeC documentation PDF inside the RadISpeC folder. This PDF also contain the same information as the function descriptions. The program work fully with the Matlab IDE for 2017b. If the user want to use the created GUI, the Matlab version has to be 2017b or newer. This lies in the function UIFigure that is used, which after an update from 2017a to 2017b made it uncompatible with older Matlab versions. It is possible to request an ".exe" with a standalone version of the program that use the GUI by contacting Anders Ivarsson from DTU MEK <br>
DOI: 10.6084/m9.figshare.6988922
title: Supplementary Material for: Dietary Oxidative Balance Scores and Biomarkers of Inflammation among Individuals with and without Chronic Kidney Disease

description: <b><i>Background:</i></b> Oxidative stress and inflammation are proposed mechanisms of nonspecific kidney injury and progressive kidney failure. Higher dietary oxidative balance scores (OBS) are associated with lower prevalence of chronic kidney disease (CKD). <b><i>Methods:</i></b> We investigated the association between OBS and biomarkers of inflammation using data from the Reasons for Geographic and Racial Differences in Stroke (REGARDS) study. Nutrient estimates from the Block Food Frequency Questionnaires were used to define tertiles of 11 pro- and antioxidant factors. Points for each OBS component were summed, with a higher score indicating predominance of antioxidant exposures. Multivariable linear regression models were used to estimate the association between OBS and biomarkers of inflammation (interleukin-6 [IL-6], interleukin-8 [IL-8], interleukin-10 [IL-10], fibrinogen, C-reactive protein [CRP], white blood cell count, and cystatin C). An interaction term was included to determine if associations between OBS and inflammatory markers differed between individuals with and without CKD. <b><i>Results:</i></b> Of 682 participants, 22.4% had CKD. In adjusted models, OBS was associated with CRP and IL-6. For every 5-unit increase in OBS, the CRP concentration was –15.3% lower (95% CI: –25.6, –3.6). The association of OBS with IL-6 differed by CKD status; for every 5-unit increase in OBS, IL-6 was –10.7% lower (95% CI: –16.3, –4.7) among those without CKD, but there was no association among those with CKD (<i>p</i> = 0.03). <b><i>Conclusion:</i></b> This study suggests that a higher OBS is associated with more favorable levels of IL-6 and CRP, and that the association of OBS and IL-6 may be modified by CKD status.
DOI: 10.7284/111099
title: Multibeam Echosounder data collected during research cruise KM0504 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988802
title: Tracking data, Subject (a) MC Motion

description: Motion tracking data from subject (a) with MC and motion.Aij is the i,j element of the transformation matrix
DOI: 10.7284/111102
title: Multibeam Echosounder data collected during research cruise KM0506 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988298
title: Additional file 9 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 9. Systematic map database.
DOI: 10.6084/m9.figshare.6988298.v1
title: MOESM9 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 9. Systematic map database.
DOI: 10.6084/m9.figshare.6988295
title: Additional file 8 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 8. Data used in meta-analyses.
DOI: 10.6084/m9.figshare.6988292
title: Additional file 7 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 7. R script for meta-analyses.
DOI: 10.6084/m9.figshare.6988295.v1
title: MOESM8 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 8. Data used in meta-analyses.
DOI: 10.6084/m9.figshare.6988292.v1
title: MOESM7 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 7. R script for meta-analyses.
DOI: 10.6084/m9.figshare.6988286
title: Additional file 5 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 5. Meta-data extraction and coding schema.
DOI: 10.6084/m9.figshare.6988286.v1
title: MOESM5 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 5. Meta-data extraction and coding schema.
DOI: 10.6084/m9.figshare.6988280
title: Additional file 3 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 3. Articles excluded from the review at full text.
DOI: 10.6084/m9.figshare.6988280.v1
title: MOESM3 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 3. Articles excluded from the review at full text.
DOI: 10.6084/m9.figshare.6988283
title: Additional file 4 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 4. Studies excluded from the review due to low validity.
DOI: 10.6084/m9.figshare.6988283.v1
title: MOESM4 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 4. Studies excluded from the review due to low validity.
DOI: 10.6084/m9.figshare.6988268
title: Additional file 1 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 1. Literature searches.
DOI: 10.6084/m9.figshare.6988271
title: Additional file 2 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 2. Unobtainable articles following title and abstract screening.
DOI: 10.6084/m9.figshare.6988268.v1
title: MOESM1 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 1. Literature searches.
DOI: 10.6084/m9.figshare.6988271.v1
title: MOESM2 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 2. Unobtainable articles following title and abstract screening.
DOI: 10.7284/100791
title: Multibeam Echosounder data collected during research cruise KM0615 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988262
title: Additional file 13 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 13. ROSES form for the systematic review report.
DOI: 10.6084/m9.figshare.6988262.v1
title: MOESM13 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 13. ROSES form for the systematic review report.
DOI: 10.6084/m9.figshare.6988229
title: Additional file 4: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S4. This table provides all miRNA in our study predicted to target the Estrogen Receptor ESR1, ranked by binding probability. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6988229.v1
title: Additional file 4: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S4. This table provides all miRNA in our study predicted to target the Estrogen Receptor ESR1, ranked by binding probability. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6988226
title: Additional file 10 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 10. Data extraction and validity assessment of quantitative synthesis studies.
DOI: 10.6084/m9.figshare.6988226.v1
title: MOESM10 of What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond pyrophilous and saproxylic species? A systematic review

description: Additional file 10. Data extraction and validity assessment of quantitative synthesis studies.
DOI: 10.6084/m9.figshare.6988211
title: Additional file 3: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S3. This provides a list of all Gene Ontology (GO) terms enriched in our set of 16 miRNA (Fig. 4). (XLSX 31 kb)
DOI: 10.6084/m9.figshare.6988211.v1
title: Additional file 3: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S3. This provides a list of all Gene Ontology (GO) terms enriched in our set of 16 miRNA (Fig. 4). (XLSX 31 kb)
DOI: 10.7284/100809
title: Multibeam Echosounder data collected during research cruise KM0625 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988199
title: Additional file 2: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S2. This table contains all genes predicted to be targeted and probability of binding their 3â UTR for the set of 16 miRNA in Fig. 4. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.6988199.v1
title: Additional file 2: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S2. This table contains all genes predicted to be targeted and probability of binding their 3â UTR for the set of 16 miRNA in Fig. 4. (XLSX 109 kb)
DOI: 10.6084/m9.figshare.6988187
title: Additional file 1: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S1. This table contains normalized RNAseq expression data for all miRNA in this study in Reads per Million (RPM). (XLSX 76 kb)
DOI: 10.6084/m9.figshare.6988187.v1
title: Additional file 1: of Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks

description: Table S1. This table contains normalized RNAseq expression data for all miRNA in this study in Reads per Million (RPM). (XLSX 76 kb)
DOI: 10.6084/m9.figshare.6988148
title: MOESM5 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 5: Table S5. Comparison between experimental and theoric rate parameters for PcβGlu1 and PcβGlu2 of P. citrinum.
DOI: 10.6084/m9.figshare.6988148.v1
title: MOESM5 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 5: Table S5. Comparison between experimental and theoric rate parameters for PcβGlu1 and PcβGlu2 of P. citrinum.
DOI: 10.6084/m9.figshare.6988136
title: MOESM4 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 4: Table S4. Summary of protein groups identified following mass spectrometry analysis of partially purified PcBglu2. GH—match to Glycoside Hydrolase Family (E.C.3.2.1.21).
DOI: 10.6084/m9.figshare.6988136.v1
title: MOESM4 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 4: Table S4. Summary of protein groups identified following mass spectrometry analysis of partially purified PcBglu2. GH—match to Glycoside Hydrolase Family (E.C.3.2.1.21).
DOI: 10.6084/m9.figshare.6988124
title: MOESM3 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 3: Table S3. Summary of protein groups identified following mass spectrometry analysis of purified PcBglu1. GH—match to Glycoside Hydrolase Family (E.C.3.2.1.21).
DOI: 10.6084/m9.figshare.6988124.v1
title: MOESM3 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 3: Table S3. Summary of protein groups identified following mass spectrometry analysis of purified PcBglu1. GH—match to Glycoside Hydrolase Family (E.C.3.2.1.21).
DOI: 10.7284/111104
title: Multibeam Echosounder data collected during research cruise KM0702 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988115
title: MOESM2 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 2: Table S2. Effect of solutes on PcβGlu2 stability.
DOI: 10.6084/m9.figshare.6988115.v1
title: MOESM2 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 2: Table S2. Effect of solutes on PcβGlu2 stability.
DOI: 10.6084/m9.figshare.6988106
title: Additional file 3: of Parental socioeconomic position and midlife allostatic load: a study of potential mediators

description: Table S2. Correlation matrix of all study variables. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6988106.v1
title: Additional file 3: of Parental socioeconomic position and midlife allostatic load: a study of potential mediators

description: Table S2. Correlation matrix of all study variables. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6988103
title: MOESM1 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 1: Table S1. Production of cellulases and hemicellulases by Penicillium citrinum cultivated in liquid media using wheat bran as carbon source. Activities are presented as U/mL ± SD. CMC—carboxymethylcellulose. Superscript numbers represent the number of days in culture to achieve the maximum production of each enzyme.
DOI: 10.6084/m9.figshare.6988103.v1
title: MOESM1 of Penicillium citrinum UFV1 β-glucosidases: purification, characterization, and application for biomass saccharification

description: Additional file 1: Table S1. Production of cellulases and hemicellulases by Penicillium citrinum cultivated in liquid media using wheat bran as carbon source. Activities are presented as U/mL ± SD. CMC—carboxymethylcellulose. Superscript numbers represent the number of days in culture to achieve the maximum production of each enzyme.
DOI: 10.6084/m9.figshare.6988097
title: Additional file 2: of Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX

description: Archaeal and bacterial viruses profiled in the analyzed samples. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.6988097.v1
title: Additional file 2: of Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX

description: Archaeal and bacterial viruses profiled in the analyzed samples. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.6988076
title: MOESM5 of Probing the chemicalâ biological relationship space with the Drug Target Explorer

description: Additional file 5: Supplemental TableÂ 5. Identification of multi-kinase-targeting molecules for NF2. A query of the database for molecules that target several kinases of interest in NF2 (AURKA, LIMK1/2, PTK2/2B) identified 3 polypharmacologic compounds. Related to Fig.Â 2.
DOI: 10.6084/m9.figshare.6988073
title: MOESM4 of Probing the chemicalâ biological relationship space with the Drug Target Explorer

description: Additional file 4: Supplemental TableÂ 4. Molecules targeting LIMK1/2. The database was queried for molecules that may modulate LIMK1 and LIMK2; this analysis revealed a large set of putative tool compounds. Related to Fig.Â 2.
DOI: 10.7284/100826
title: Multibeam Echosounder data collected during research cruise KM0712 using a Kongsberg EM1002 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988073.v1
title: MOESM4 of Probing the chemicalâ biological relationship space with the Drug Target Explorer

description: Additional file 4: Supplemental TableÂ 4. Molecules targeting LIMK1/2. The database was queried for molecules that may modulate LIMK1 and LIMK2; this analysis revealed a large set of putative tool compounds. Related to Fig.Â 2.
DOI: 10.6084/m9.figshare.6988076.v1
title: MOESM5 of Probing the chemicalâ biological relationship space with the Drug Target Explorer

description: Additional file 5: Supplemental TableÂ 5. Identification of multi-kinase-targeting molecules for NF2. A query of the database for molecules that target several kinases of interest in NF2 (AURKA, LIMK1/2, PTK2/2B) identified 3 polypharmacologic compounds. Related to Fig.Â 2.
DOI: 10.5281/zenodo.4005804
title: SGB.May19

description: PhyloPhlAn metagenomic database "SGB.May19"
DOI: 10.6084/m9.figshare.6988064
title: MOESM3 of Probing the chemical–biological relationship space with the Drug Target Explorer

description: Additional file 3: Supplemental Table 3. Target enrichment analysis of G-5555 highlights putative mechanistic effects. G-5555 targets were enriched in multiple Gene Ontology terms and KEGG pathways. Related to Fig. 2, Table 2.
DOI: 10.6084/m9.figshare.6988064.v1
title: MOESM3 of Probing the chemical–biological relationship space with the Drug Target Explorer

description: Additional file 3: Supplemental Table 3. Target enrichment analysis of G-5555 highlights putative mechanistic effects. G-5555 targets were enriched in multiple Gene Ontology terms and KEGG pathways. Related to Fig. 2, Table 2.
DOI: 10.5281/zenodo.4005803
title: SGB.May19

description: PhyloPhlAn metagenomic database "SGB.May19"
DOI: 10.6084/m9.figshare.6988055
title: MOESM2 of Probing the chemical–biological relationship space with the Drug Target Explorer

description: Additional file 2: Supplemental Table 2. Targets of imatinib in the Drug–Target Explorer Database. Related to Table 2.
DOI: 10.6084/m9.figshare.6988055.v1
title: MOESM2 of Probing the chemical–biological relationship space with the Drug Target Explorer

description: Additional file 2: Supplemental Table 2. Targets of imatinib in the Drug–Target Explorer Database. Related to Table 2.
DOI: 10.6084/m9.figshare.6988043
title: MOESM1 of Probing the chemical–biological relationship space with the Drug Target Explorer

description: Additional file 1: Supplemental Table 1. Targets of C21-like compounds in the Drug–Target Explorer Database. Related to Fig. 2.
DOI: 10.6084/m9.figshare.6988043.v1
title: MOESM1 of Probing the chemical–biological relationship space with the Drug Target Explorer

description: Additional file 1: Supplemental Table 1. Targets of C21-like compounds in the Drug–Target Explorer Database. Related to Fig. 2.
DOI: 10.7284/100831
title: Multibeam Echosounder data collected during research cruise KM0715 using a Kongsberg EM120 instrument system onboard the platform RV Kilo Moana
DOI: 10.6084/m9.figshare.6988019
title: Additional file 2: of A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila

description: Contains Tables S2â S5. in separated sheets. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.6988019.v1
title: Additional file 2: of A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila

description: Contains Tables S2â S5. in separated sheets. (XLSX 83 kb)