cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4802317.v2
title: DNA and AFLP matrices used in the paper "Sweet vernal grasses (Anthoxanthum) colonized African mountains along two fronts in the Late Pliocene, followed by secondary contact, polyploidization and local extinction in the Pleistocene", accepted for publication in Molecular Ecology

description: Concatenated DNA (nuclear; ITS and ETS and plastid, trnLF and trnTL) and AFLP matrices used in the paper "<i>Sweet vernal grasses (Anthoxanthum) colonized African mountains along two fronts in the Late Pliocene, followed by secondary contact, polyploidization and local extinction in the Pleistocene</i>" by Felly Mugizi Tusiime, Abel Gizaw, Tigist Wondimu, Catherine Aloyce Masao, Ahmed Abdikadir Abdi, Vincent Muwanika, Pavel Trávníček, Sileshi Nemomissa, Magnus Popp, Gerald Eilu, Christian Brochmann and Manuel Pimentel, accepted for publication in <i>Molecular Ecology</i>
DOI: 10.6084/m9.figshare.4802167
title: worked_example_files.zip

description: Contains files for the worked example described in the paper, including:<br><br>codeml-M0-BS.ctl<br>codeml-M2-BS-H0.ctl<br>codeml-M2-BS-H1.ctl<br>codeml-M1278.ctl<br>omega.txt<br>PBANKA_030280.pal2nal.paml<br>codeml-M0.ctl<br>tree.txt<br>tree-with-branch-label.txt<br>all.paml<br><br>
DOI: 10.6084/m9.figshare.4802107
title: An Interview with Dr Jennifer Paxton.docx

description: An Interview with Dr Jennifer Paxton, an anatomical perspective on tissue engineering.<br>https://www.uofgcce.org/single-post/2016/06/14/An-Interview-with-Dr-Jennifer-Paxton<br>
DOI: 10.6084/m9.figshare.4802014
title: Original XPC effect on Salmonella Typhimurium and cecal microbiota from three different ages broiler chickens when incubated in an anaerobic in vitro culture system

description: Raw sequencing data and mapping files
DOI: 10.6084/m9.figshare.4802002
title: Original XPC effect on Salmonella Typhimurium and cecal microbiota from three different ages broiler chickens when incubated in an anaerobic in vitro culture system (Trial 1 data mapping file)

description: Mapping file from trial 1.
DOI: 10.6084/m9.figshare.4802008
title: data.csv

description: Korean Urban Rural Elderly Study (KURE) data analyzed in "Contingent Association between the Size of Social Network and Osteoporosis among Korean Elderly Women", which is under review for Plos One.
DOI: 10.6084/m9.figshare.4802008.v1
title: data.csv

description: Korean Urban Rural Elderly Study (KURE) data analyzed in "Contingent Association between the Size of Social Network and Osteoporosis among Korean Elderly Women", which is under review for Plos One.
DOI: 10.6084/m9.figshare.4802014.v2
title: Original XPC effect on Salmonella Typhimurium and cecal microbiota from three different ages broiler chickens when incubated in an anaerobic in vitro culture system

description: Raw sequencing data and mapping files
DOI: 10.6084/m9.figshare.4802014.v1
title: Original XPC effect on Salmonella Typhimurium and cecal microbiota from three different ages broiler chickens when incubated in an anaerobic in vitro culture system (Trial 1 data set)

description: Raw sequencing data for trial 1
DOI: 10.6084/m9.figshare.4801807
title: hun_blank.xlsx

description: students supposed to sign this form in physio labs<br>
DOI: 10.6084/m9.figshare.4801807.v1
title: hun_blank.xlsx

description: students supposed to sign this form in physio labs<br>
DOI: 10.6084/m9.figshare.4801771
title: Sup 4: Delineating the structural controls on the genesis of iron oxide–Cu–Au deposits genesis through implicit modelling: a case study from the E1 Group, Cloncurry District, Australia

description: Appendix Sup 1: Probability plots of assay data for modelled elements. Plots made in ioGAS software. Power transform applied to y-axes of all elements. Note that Fe, P and S do not follow normal/log-normal distributions. Appendix Sup 2: Summary statistics of assay data for modelled elements. A description of the rock type (lithology) codes used in the geological model are available in Sup 3. The 3D models presented in this paper are available as supplementary data online (Sup 4) and may be viewed in the free Leapfrog Viewer program, which can be downloaded from Leapfrog 3d website
DOI: 10.6084/m9.figshare.4801768
title: Sup 2: Delineating the structural controls on the genesis of iron oxide–Cu–Au deposits genesis through implicit modelling: a case study from the E1 Group, Cloncurry District, Australia

description: Appendix Sup 1: Probability plots of assay data for modelled elements. Plots made in ioGAS software. Power transform applied to y-axes of all elements. Note that Fe, P and S do not follow normal/log-normal distributions. Appendix Sup 2: Summary statistics of assay data for modelled elements. A description of the rock type (lithology) codes used in the geological model are available in Sup 3. The 3D models presented in this paper are available as supplementary data online (Sup 4) and may be viewed in the free Leapfrog Viewer program, which can be downloaded from Leapfrog 3d website
DOI: 10.6084/m9.figshare.4801771.v1
title: Sup 4: Delineating the structural controls on the genesis of iron oxide–Cu–Au deposits genesis through implicit modelling: a case study from the E1 Group, Cloncurry District, Australia

description: Appendix Sup 1: Probability plots of assay data for modelled elements. Plots made in ioGAS software. Power transform applied to y-axes of all elements. Note that Fe, P and S do not follow normal/log-normal distributions. Appendix Sup 2: Summary statistics of assay data for modelled elements. A description of the rock type (lithology) codes used in the geological model are available in Sup 3. The 3D models presented in this paper are available as supplementary data online (Sup 4) and may be viewed in the free Leapfrog Viewer program, which can be downloaded from Leapfrog 3d website
DOI: 10.6084/m9.figshare.4801768.v1
title: Sup 2: Delineating the structural controls on the genesis of iron oxide–Cu–Au deposits genesis through implicit modelling: a case study from the E1 Group, Cloncurry District, Australia

description: Appendix Sup 1: Probability plots of assay data for modelled elements. Plots made in ioGAS software. Power transform applied to y-axes of all elements. Note that Fe, P and S do not follow normal/log-normal distributions. Appendix Sup 2: Summary statistics of assay data for modelled elements. A description of the rock type (lithology) codes used in the geological model are available in Sup 3. The 3D models presented in this paper are available as supplementary data online (Sup 4) and may be viewed in the free Leapfrog Viewer program, which can be downloaded from Leapfrog 3d website
DOI: 10.6084/m9.figshare.4801663
title: S3-Dataset from Quantitative abilities in a reptile (<i>Podarcis sicula</i>)

description: Datasets of Experiments 1 and 2
DOI: 10.6084/m9.figshare.4801663.v1
title: S3-Dataset from Quantitative abilities in a reptile (<i>Podarcis sicula</i>)

description: Datasets of Experiments 1 and 2
DOI: 10.6084/m9.figshare.4801603
title: Molecular and morphological characterization of the <i>Achnanthidium minutissimum</i> complex (Bacillariophyta) in Petuniabukta (Spitsbergen, High Arctic) including the description of <i>A. digitatum</i> sp. nov.

description: Recent morphology-based investigations of freshwater Arctic diatoms suggest that many species remain to be discovered, reflecting a unique polar flora. During a survey of the freshwater diatom flora of northern Billefjorden, including the Petuniabukta fjord region (Spitsbergen), several morphodemes belonging to the <i>Achnanthidium minutissimum</i> species complex were recorded. Molecular phylogenies based on <i>rbc</i>L, 28S and 18S sequences, including single cells from Canada and strains from Marion Island (sub-Antarctica) and GenBank revealed the presence of 12 distinct <i>A. minutissimum</i> complex lineages, of which three contained strains from Spitsbergen. One Arctic lineage is described as a new species. <i>Achnanthidium digitatum</i> sp. nov. is morphologically characterized by narrow, linear to only slightly lanceolate valves and usually two areolae per stria. The two remaining Arctic lineages are in need of a more complete morphological and molecular comparison with other representatives of the <i>A. minutissimum</i> complex to clarify their taxonomic identity. It is argued that implementation of molecular data in the taxonomy of <i>Achnanthidium</i> will be essential to solve the taxonomic problems associated with this group, eventually resulting in a better understanding of the biogeography and niche differentiation of different species belonging to the <i>A. minutissimum</i> complex. Ideally, this should be based on more variable genes than the currently widely used 18S, which does not have a species level resolution in the <i>A. minutissimum</i> complex.
DOI: 10.6084/m9.figshare.4801630
title: Supplementary data from Effect of extreme sea surface temperature events on the demography of an age-structured albatross population

description: SST input data as well as each figure's output data with multiple simulations. Please see the 'Readme' file for full details.
DOI: 10.6084/m9.figshare.4801561
title: Dataset-Full.xlsx

description: Data on Factors for Impact and Prestige Rankings of MIS Journals<br>
DOI: 10.6084/m9.figshare.4801603.v1
title: Molecular and morphological characterization of the <i>Achnanthidium minutissimum</i> complex (Bacillariophyta) in Petuniabukta (Spitsbergen, High Arctic) including the description of <i>A. digitatum</i> sp. nov.

description: Recent morphology-based investigations of freshwater Arctic diatoms suggest that many species remain to be discovered, reflecting a unique polar flora. During a survey of the freshwater diatom flora of northern Billefjorden, including the Petuniabukta fjord region (Spitsbergen), several morphodemes belonging to the <i>Achnanthidium minutissimum</i> species complex were recorded. Molecular phylogenies based on <i>rbc</i>L, 28S and 18S sequences, including single cells from Canada and strains from Marion Island (sub-Antarctica) and GenBank revealed the presence of 12 distinct <i>A. minutissimum</i> complex lineages, of which three contained strains from Spitsbergen. One Arctic lineage is described as a new species. <i>Achnanthidium digitatum</i> sp. nov. is morphologically characterized by narrow, linear to only slightly lanceolate valves and usually two areolae per stria. The two remaining Arctic lineages are in need of a more complete morphological and molecular comparison with other representatives of the <i>A. minutissimum</i> complex to clarify their taxonomic identity. It is argued that implementation of molecular data in the taxonomy of <i>Achnanthidium</i> will be essential to solve the taxonomic problems associated with this group, eventually resulting in a better understanding of the biogeography and niche differentiation of different species belonging to the <i>A. minutissimum</i> complex. Ideally, this should be based on more variable genes than the currently widely used 18S, which does not have a species level resolution in the <i>A. minutissimum</i> complex.
DOI: 10.6084/m9.figshare.4801555
title: Appendix.docx

description: Appendices of the Paper http://dx.doi.org/10.1080/0951192X.2017.1307452
DOI: 10.6084/m9.figshare.4801561.v1
title: Dataset-Full.xlsx

description: Data on Factors for Impact and Prestige Rankings of MIS Journals<br>
DOI: 10.6084/m9.figshare.4801603.v3
title: Molecular and morphological characterization of the <i>Achnanthidium minutissimum</i> complex (Bacillariophyta) in Petuniabukta (Spitsbergen, High Arctic) including the description of <i>A. digitatum</i> sp. nov.

description: Recent morphology-based investigations of freshwater Arctic diatoms suggest that many species remain to be discovered, reflecting a unique polar flora. During a survey of the freshwater diatom flora of northern Billefjorden, including the Petuniabukta fjord region (Spitsbergen), several morphodemes belonging to the <i>Achnanthidium minutissimum</i> species complex were recorded. Molecular phylogenies based on <i>rbc</i>L, 28S and 18S sequences, including single cells from Canada and strains from Marion Island (sub-Antarctica) and GenBank revealed the presence of 12 distinct <i>A. minutissimum</i> complex lineages, of which three contained strains from Spitsbergen. One Arctic lineage is described as a new species. <i>Achnanthidium digitatum</i> sp. nov. is morphologically characterized by narrow, linear to only slightly lanceolate valves and usually two areolae per stria. The two remaining Arctic lineages are in need of a more complete morphological and molecular comparison with other representatives of the <i>A. minutissimum</i> complex to clarify their taxonomic identity. It is argued that implementation of molecular data in the taxonomy of <i>Achnanthidium</i> will be essential to solve the taxonomic problems associated with this group, eventually resulting in a better understanding of the biogeography and niche differentiation of different species belonging to the <i>A. minutissimum</i> complex. Ideally, this should be based on more variable genes than the currently widely used 18S, which does not have a species level resolution in the <i>A. minutissimum</i> complex.
DOI: 10.6084/m9.figshare.4801603.v2
title: Molecular and morphological characterization of the <i>Achnanthidium minutissimum</i> complex (Bacillariophyta) in Petuniabukta (Spitsbergen, High Arctic) including the description of <i>A. digitatum</i> sp. nov.

description: Recent morphology-based investigations of freshwater Arctic diatoms suggest that many species remain to be discovered, reflecting a unique polar flora. During a survey of the freshwater diatom flora of northern Billefjorden, including the Petuniabukta fjord region (Spitsbergen), several morphodemes belonging to the <i>Achnanthidium minutissimum</i> species complex were recorded. Molecular phylogenies based on <i>rbc</i>L, 28S and 18S sequences, including single cells from Canada and strains from Marion Island (sub-Antarctica) and GenBank revealed the presence of 12 distinct <i>A. minutissimum</i> complex lineages, of which three contained strains from Spitsbergen. One Arctic lineage is described as a new species. <i>Achnanthidium digitatum</i> sp. nov. is morphologically characterized by narrow, linear to only slightly lanceolate valves and usually two areolae per stria. The two remaining Arctic lineages are in need of a more complete morphological and molecular comparison with other representatives of the <i>A. minutissimum</i> complex to clarify their taxonomic identity. It is argued that implementation of molecular data in the taxonomy of <i>Achnanthidium</i> will be essential to solve the taxonomic problems associated with this group, eventually resulting in a better understanding of the biogeography and niche differentiation of different species belonging to the <i>A. minutissimum</i> complex. Ideally, this should be based on more variable genes than the currently widely used 18S, which does not have a species level resolution in the <i>A. minutissimum</i> complex.
DOI: 10.5517/ccdc.csd.cc21wmzk
title: CCDC 1903399: Experimental Crystal Structure Determination

description: Related Article: Ting Wan, Chao Pi, Yangjie Wu, Xiuling Cui|2020|Org.Lett.|22|6484|doi:10.1021/acs.orglett.0c02283
DOI: 10.5517/ccdc.csd.cc231zlr
title: CCDC 1938324: Experimental Crystal Structure Determination

description: Related Article: Xinwei Hu, Youxiang Shao, Haisheng Xie, Xin Chen, Fengjuan Chen, Zhuofeng Ke, Huanfeng Jiang, Wei Zeng|2020|ACS Catalysis|10|8402|doi:10.1021/acscatal.0c02683
DOI: 10.5517/ccdc.csd.cc231zpv
title: CCDC 1938327: Experimental Crystal Structure Determination

description: Related Article: Xinwei Hu, Youxiang Shao, Haisheng Xie, Xin Chen, Fengjuan Chen, Zhuofeng Ke, Huanfeng Jiang, Wei Zeng|2020|ACS Catalysis|10|8402|doi:10.1021/acscatal.0c02683
DOI: 10.5517/ccdc.csd.cc23ncrx
title: CCDC 1955999: Experimental Crystal Structure Determination

description: Related Article: Zhenyu Song, Zi Yang, Pu Wang, Zhaojiang Shi, Tingfang Li, Xiuling Cui|2020|Org.Lett.|22|6272|doi:10.1021/acs.orglett.0c02024
DOI: 10.5517/ccdc.csd.cc23ygbw
title: CCDC 1964728: Experimental Crystal Structure Determination

description: Related Article: Feng Guo, Changhua Su, Yuhang Fan, Wenbing Shi, Xiuling Zhang, Jiakun Xu|2020|Dalton Trans.|49|11209|doi:10.1039/D0DT01811B
DOI: 10.5517/ccdc.csd.cc240b8s
title: CCDC 1966524: Experimental Crystal Structure Determination

description: Related Article: Caitlin M. B. Farr, Amaan M. Kazerouni, Bohyun Park, Christopher D. Poff, Joonghee Won, Kimberly R. Sharp, Mu-Hyun Baik, Simon B. Blakey|2020|J.Am.Chem.Soc.|142|13996|doi:10.1021/jacs.0c07305
DOI: 10.17608/k6.auckland.4800904
title: revised TCoF per TATE.xlsx

description: This spreadsheet shows the items retained by analysis and presented in the 2012 Teaching and Teacher Education article.
DOI: 10.6084/m9.figshare.4800970
title: methylAnalysisDataV3.tar.gz

description: The Illumina 450k methylation data and related files required to run the workflow presented in the paper by Maksimovic et al. (2016). All of the data and additional resources are otherwise publicly available from the original sources cited in the paper but have been packaged up and made available here to facilitate execution of the R workflow. <br><br>Maksimovic J, Phipson B and Oshlack A. A cross-package Bioconductor workflow for analysing methylation array data [version 3]. F1000Research 2016, <b>5</b>:1281 <br><br>
DOI: 10.6084/m9.figshare.4800895
title: Supplementary Data for 'Rape: is there an app for that? An empirical analysis of the features of anti-rape apps'

description: This table contains a list of all of the mobile phone applications (apps) investigated, along with the name of the developer, URL(s), and any additional notes.
DOI: 10.17608/k6.auckland.4800904.v1
title: revised TCoF per TATE.xlsx

description: This spreadsheet shows the items retained by analysis and presented in the 2012 Teaching and Teacher Education article.
DOI: 10.6084/m9.figshare.4800970.v1
title: methylAnalysisDataV3.tar.gz

description: The Illumina 450k methylation data and related files required to run the workflow presented in the paper by Maksimovic et al. (2016). All of the data and additional resources are otherwise publicly available from the original sources cited in the paper but have been packaged up and made available here to facilitate execution of the R workflow. <br><br>Maksimovic J, Phipson B and Oshlack A. A cross-package Bioconductor workflow for analysing methylation array data [version 3]. F1000Research 2016, <b>5</b>:1281 <br><br>
DOI: 10.6084/m9.figshare.4800865
title: Factors influencing biodeposit production by the New Zealand freshwater mussel <i>Echyridella menziesii</i>

description: Laboratory experiments on the New Zealand freshwater mussel <i>Echyridella menziesii</i> were used to investigate the short-term effects (7–8 days) of food type on rates of biodeposition and benthic substrate respiration. Post-feeding biodeposition rates ranged from 0.34 to 1.52 mg g<sup>−1</sup> h<sup>−1</sup> (mean = 0.50 mg g<sup>−1</sup> h<sup>−1</sup>) and were unaffected by the addition of toxin-producing <i>Microcystis</i>. Addition of suspended sediment (30 mg L<sup>−1</sup>) visibly altered substrate composition, and increased total and inorganic biodeposit production rates by 24–33% compared to mussels fed commercial phytoplankton stock. Biodeposition rates of mussels in lake bed substrates were 38% higher than those in silica sand for identical feeding regimes, suggesting that a significant proportion of material produced in this experiment could have been derived from feeding on organic matter in the lake bed sediments. Respiration rates were higher in treatments with <i>Microcystis</i> but were unaffected by the presence of mussels. This laboratory study suggests that biodeposition by <i>E. menziesii</i> is resilient to short-term exposure to <i>Microcystis</i>, and highlights the ability of mussels to alter benthic substrate composition by incorporating suspended sediment into substrates.
DOI: 10.6084/m9.figshare.4800865.v2
title: Factors influencing biodeposit production by the New Zealand freshwater mussel <i>Echyridella menziesii</i>

description: Laboratory experiments on the New Zealand freshwater mussel <i>Echyridella menziesii</i> were used to investigate the short-term effects (7–8 days) of food type on rates of biodeposition and benthic substrate respiration. Post-feeding biodeposition rates ranged from 0.34 to 1.52 mg g<sup>−1</sup> h<sup>−1</sup> (mean = 0.50 mg g<sup>−1</sup> h<sup>−1</sup>) and were unaffected by the addition of toxin-producing <i>Microcystis</i>. Addition of suspended sediment (30 mg L<sup>−1</sup>) visibly altered substrate composition, and increased total and inorganic biodeposit production rates by 24–33% compared to mussels fed commercial phytoplankton stock. Biodeposition rates of mussels in lake bed substrates were 38% higher than those in silica sand for identical feeding regimes, suggesting that a significant proportion of material produced in this experiment could have been derived from feeding on organic matter in the lake bed sediments. Respiration rates were higher in treatments with <i>Microcystis</i> but were unaffected by the presence of mussels. This laboratory study suggests that biodeposition by <i>E. menziesii</i> is resilient to short-term exposure to <i>Microcystis</i>, and highlights the ability of mussels to alter benthic substrate composition by incorporating suspended sediment into substrates.
DOI: 10.6084/m9.figshare.4800865.v1
title: Factors influencing biodeposit production by the New Zealand freshwater mussel <i>Echyridella menziesii</i>

description: Laboratory experiments on the New Zealand freshwater mussel <i>Echyridella menziesii</i> were used to investigate the short-term effects (7–8 days) of food type on rates of biodeposition and benthic substrate respiration. Post-feeding biodeposition rates ranged from 0.34 to 1.52 mg g<sup>−1</sup> h<sup>−1</sup> (mean = 0.50 mg g<sup>−1</sup> h<sup>−1</sup>) and were unaffected by the addition of toxin-producing <i>Microcystis</i>. Addition of suspended sediment (30 mg L<sup>−1</sup>) visibly altered substrate composition, and increased total and inorganic biodeposit production rates by 24–33% compared to mussels fed commercial phytoplankton stock. Biodeposition rates of mussels in lake bed substrates were 38% higher than those in silica sand for identical feeding regimes, suggesting that a significant proportion of material produced in this experiment could have been derived from feeding on organic matter in the lake bed sediments. Respiration rates were higher in treatments with <i>Microcystis</i> but were unaffected by the presence of mussels. This laboratory study suggests that biodeposition by <i>E. menziesii</i> is resilient to short-term exposure to <i>Microcystis</i>, and highlights the ability of mussels to alter benthic substrate composition by incorporating suspended sediment into substrates.
DOI: 10.6084/m9.figshare.4798042
title: VEnron2

description: VEnron2 is an industrial-scale and public spreadsheet corpus with version information, including 1,609 evolution groups and 12,254 spreadsheets. (Multiple versions originated from the same spreadsheet are considered as an evolution group.)<br>VEnron2 is a big improvement to VEnron1.1. We extrace much more evolution groups and spreadsheets from the Enron email archive, by using SpreadCluster.VErnon2 is published associated with our MSR 2017 paper in May 2017.<br>Liang Xu, Wensheng Dou, Chushu Gao, Jie Wang, Jun Wei, Hua Zhong, Tao Huang. SpreadCluster: Recovering Versioned Spreadsheets through Similarity-Based Clustering. In <i>Proceedings of the 14th International Conference on Mining Software Repositories</i> (<b><i>MSR 2017</i></b>), May 2017.