cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wzymys
title: Occurrence Download

description: A dataset containing 187498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aedes japonicus (Theobald, 1901), Aedes nipponicus LaCasse & Yamaguti, 1948, Acetes japonicus Kishinouye, 1905, Asellus aquaticus (Linnaeus, 1758), Asellus aquaticus (Linnaeus, 1758), Atyaephyra desmarestii (Millet, 1831), Bellamya chinensis (J.E.Gray, 1833), Botrylloides niger Herdman, 1886, Botrylloides nigrum Herdman, 1886, Botrylloides violaceus Oka, 1927, Botrylloides violaceum Oka, 1927, Bugula neritina (Linnaeus, 1758), Celleporaria inaudita Tilbrook, Hayward & Gordon, 2001, Centris nitida Smith, 1874, Cercopagis pengoi (Ostroumov, 1891), Chelicorophium curvispinum (G.O.Sars, 1895), Cradoscrupocellaria bertholletii (Audouin, 1826), Crangonyx pseudogracilis Bousfield, 1958, Daphnia lumholtzi Sars, 1885, Dermatophagoides farinae A.M.Hughes, 1961, Didemnum vexillum Kott, 2002, Didemnum vexillum Romanov, 1989, Dikerogammarus haemobaphes (Eichwald, 1841), Diplosoma listerianum (Milne Edwards, 1841), Distaplia corolla Monniot F., 1974, Pterois volitans (Linnaeus, 1758))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 187498 records from 544 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067766-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110617778
title: Persepolis Fortification Elamite Tablet 2202, PF-NN 2202

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] PF-NN 2202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Minor damage to tablet. Chipping on left edge, on obverse face toward bottom edge and on bottom edge toward left edge.
DOI: 10.25549/inscriptifact-ouc110617759
title: Persepolis Fortification Elamite Tablet 1720, PF-NN 1720

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF-NN 1720 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on upper edge, round edge and flat edge. ❧ [Physical Object Note:] Minor damage to tablet. Broken off at bottom edge, flat edge corner. Bottom edge chipped. Round edge cracked.
DOI: 10.25549/inscriptifact-ouc110621250
title: Persepolis Fortification Anepigraphic Tablet 0250.202, PFAnep 0250.202

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0250.202, PFUT 0250-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge?, obverse, reverse and upper edge. ❧ [Physical Object Note:] Minor cracks on bottom edge, reverse, upper edge. Some damange on obverse.
DOI: 10.25549/inscriptifact-ouc1sto1611254
title: InscriptiFact -- an image database of inscriptions and artifacts

description: The InscriptiFact Collection is designed to allow access via the Internet to high-resolution images of ancient inscriptions and artifacts, primarily from the Near Eastern and Mediterranean Worlds. The targeted inscriptions constitute some of the world’s earliest written records, which are mostly housed in a number of international museums and libraries, as well as field projects where inscriptions still remain in situ. Included, for example, are, selected Dead Sea Scrolls; cuneiform tablets from Mesopotamia, Persia, Canaan and Egypt; early Jewish papyri from Egypt; lapidary inscriptions, primarily from Jordan, Lebanon and Cyprus; inscriptions on a variety of hard media (e.g., ostraca, copper, semi-precious stones, jar handles) mostly written in early Canaanite, Phoenician, Hebrew, Aramaic, Ammonite and Edomite; and much more. These ancient texts are foundational documents that serve as a point of reference for Judaism, Christianity, Islam and the cultures out of which they emerged. The name "InscriptiFact" is intended to convey the concept of a scholarly archive based on "facts" about "inscriptions" and "artifacts." West Semitic Research Project (WSRP) under the auspices of the University of Southern California (USC) is broadly acknowledged as a leader in the application of photographic and digital technologies to capture and analyze data of ancient texts. The West Semitic Research image archive now contains approximately 1,500,000 images. Important! Search terms with more than one word or number need to be enclosed in quotation marks.Guide to Searching InscriptiFact
DOI: 10.25549/inscriptifact-ouc110617746
title: Persepolis Fortification Elamite Tablet 1702, PF-NN 1702

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] PF-NN 1702 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on flat edge, round edge, reverse and upper edge. ❧ [Physical Object Note:] Minimal damage to tablet.
DOI: 10.15468/dl.7asnyh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sophora masafuerana",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026760-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110617720
title: Persepolis Fortification Elamite Tablet 1657, PF-NN 1657

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] PF-NN 1657 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Minor damage to tablet. Round edge broken off. Reverse face chipped at bottom edge, round edge.
DOI: 10.25549/inscriptifact-ouc110621242
title: Persepolis Fortification Anepigraphic Tablet 0250.201, PFAnep 0250.201

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0250.201, PFUT 0250-201 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, obverse, upper edge. ❧ [Physical Object Note:] Minor cracks on bottom edge.
DOI: 10.25549/inscriptifact-ouc110617719
title: Persepolis Fortification Elamite Tablet 1657, PF-NN 1657

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] PF-NN 1657 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Minor damage to tablet. Round edge broken off. Reverse face chipped at bottom edge, round edge.
DOI: 10.25549/inscriptifact-ouc110621241
title: Persepolis Fortification Anepigraphic Tablet 0250.202, PFAnep 0250.202

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0250.202, PFUT 0250-202 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impressions on bottom edge, left edge?, obverse, reverse and upper edge. ❧ [Physical Object Note:] Minor cracks on bottom edge, reverse, upper edge. Some damange on obverse.
DOI: 10.25549/inscriptifact-ouc110621231
title: Persepolis Fortification Anepigraphic Tablet 0839.104, PFAnep 0839.104

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PFAnep 0839.104, PFUT 0839-104 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Text ❧ [Physical Object Description:] Clay tablet with seal impression on left edge, obverse. ❧ [Physical Object Note:] Tablet is rough and worn, with encrustations. Cracks on bottom edge, upper edge, obverse, reverse. Right edge somewhat damaged. Upper edge cracked and somewhat broken. Gouge on bottom edge.
DOI: 10.25549/inscriptifact-ouc1sto1611204
title: InscriptiFact -- an image database of inscriptions and artifacts

description: The InscriptiFact Collection is designed to allow access via the Internet to high-resolution images of ancient inscriptions and artifacts, primarily from the Near Eastern and Mediterranean Worlds. The targeted inscriptions constitute some of the world’s earliest written records, which are mostly housed in a number of international museums and libraries, as well as field projects where inscriptions still remain in situ. Included, for example, are, selected Dead Sea Scrolls; cuneiform tablets from Mesopotamia, Persia, Canaan and Egypt; early Jewish papyri from Egypt; lapidary inscriptions, primarily from Jordan, Lebanon and Cyprus; inscriptions on a variety of hard media (e.g., ostraca, copper, semi-precious stones, jar handles) mostly written in early Canaanite, Phoenician, Hebrew, Aramaic, Ammonite and Edomite; and much more. These ancient texts are foundational documents that serve as a point of reference for Judaism, Christianity, Islam and the cultures out of which they emerged. The name "InscriptiFact" is intended to convey the concept of a scholarly archive based on "facts" about "inscriptions" and "artifacts." West Semitic Research Project (WSRP) under the auspices of the University of Southern California (USC) is broadly acknowledged as a leader in the application of photographic and digital technologies to capture and analyze data of ancient texts. The West Semitic Research image archive now contains approximately 1,500,000 images. Important! Search terms with more than one word or number need to be enclosed in quotation marks.Guide to Searching InscriptiFact
DOI: 10.15156/bio/sh1924927.10fu
title: SH1924927.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1924985.10fu
title: SH1924985.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1924987.10fu
title: SH1924987.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.225pvq
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea moncktonii",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 277 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022299-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jsk8s
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea moncktonii",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 653 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022300-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uph6kd
title: Occurrence Download

description: A dataset containing 5042 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella pallescens"
 ]
}

 The dataset includes 5042 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022301-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq386q
title: Occurrence Download

description: A dataset containing 966 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella acanthonota"
 ]
}

 The dataset includes 966 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022302-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ssur54
title: Occurrence Download

description: A dataset listing the 1128 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Biodiversidad asociada al Estudio de Impacto Ambiental del proyecto: Interconexión Cuestecitas - Copey - Fundación 500/220 mil voltios"
 ]
}

 The dataset's 1128 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022290-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkt23n
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doronicum macrophyllum",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022303-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfzpa9
title: Occurrence Download

description: A dataset containing 3954 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella moellendorffii"
 ]
}

 The dataset includes 3954 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022304-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17345639
title: Zhang ATAC atlas preprocessing for D3 Diffusion Training

description: Original Data from Paper:Zhang, Kai et al. “A single-cell atlas of chromatin accessibility in the human genome.” Cell 184 (2021): 5985-6001.e19.

 

The code performs 3 steps:

1-download-preprocess: Downloads the matrix and converts to a h5ad

2-pseudobulk-annotate: Annotates cells by annotated cluster (from paper), and pseudobulks by averaging across cell clusters to get mean expression in each cluster.

3-feature-engineering: Performs differential peak analysis to identify cell-type specific peaks, then saves the resulting data as a one-hot encoded .h5 representing cell-type specific accessible sequences for each cell type.

The final dataset of this workflow is 3f-dataset.h5
DOI: 10.5281/zenodo.17345640
title: Zhang ATAC atlas preprocessing for D3 Diffusion Training

description: Original Data from Paper:Zhang, Kai et al. “A single-cell atlas of chromatin accessibility in the human genome.” Cell 184 (2021): 5985-6001.e19.

 

The code performs 3 steps:

1-download-preprocess: Downloads the matrix and converts to a h5ad

2-pseudobulk-annotate: Annotates cells by annotated cluster (from paper), and pseudobulks by averaging across cell clusters to get mean expression in each cluster.

3-feature-engineering: Performs differential peak analysis to identify cell-type specific peaks, then saves the resulting data as a one-hot encoded .h5 representing cell-type specific accessible sequences for each cell type.

The final dataset of this workflow is 3f-dataset.h5
DOI: 10.5517/cc8jg07
title: CCDC 254138: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, R.P.Watson, M.D.Smith, P.J.Pellechia|2005|Organometallics|24|1544|doi:10.1021/om049112f
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8jg18
title: CCDC 254139: Experimental Crystal Structure Determination

description: Related Article: D.L.Reger, R.P.Watson, M.D.Smith, P.J.Pellechia|2005|Organometallics|24|1544|doi:10.1021/om049112f
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8l6lm
title: CCDC 255830: Experimental Crystal Structure Determination

description: Related Article: Pei Ling Chiu, Hon Man Lee|2005|Organometallics|24|1692|doi:10.1021/om049070v
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8l6mn
title: CCDC 255831: Experimental Crystal Structure Determination

description: Related Article: Pei Ling Chiu, Hon Man Lee|2005|Organometallics|24|1692|doi:10.1021/om049070v
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8l6np
title: CCDC 255832: Experimental Crystal Structure Determination

description: Related Article: Pei Ling Chiu, Hon Man Lee|2005|Organometallics|24|1692|doi:10.1021/om049070v
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc8l6pq
title: CCDC 255833: Experimental Crystal Structure Determination

description: Related Article: Pei Ling Chiu, Hon Man Lee|2005|Organometallics|24|1692|doi:10.1021/om049070v
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.