cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12936171.v2
title: The biostratigraphy of the Upper Devonian and lowermost Carboniferous of the Khoshyeilagh area, northeastern Alborz, Iran

description: Diverse and well-preserved marine palynomorphs occur in the Padeha, Khoshyeilagh, and Mobarak formations in the Khoshyeilagh area, northeastern Alborz, northern Iran. The marine palynomorph assemblages consist of acritarchs, prasinophytes, and chitinozoans, comprising 27 genera and 46 species. In addition, the studied sediments contain 20 species of algae, foraminifera, and corals allocated to 11 genera. The vertical distribution of acritarchs and chitinozoans allows the erection within these sediments of three local assemblage zones. Biozone I occurs in the upper part of the Padeha Formation and the basal part of the Khoshyeilagh Formation, suggesting a Frasnian–early Famennian age; Biozone II is present in the Khoshyeilagh Formation and indicates a Famennian age. Biozone III, which occurs in the basal part of the Mobarak Formation, suggests a Tournaisian age for this interval. Many of the palynomorph species, such as <i>Crassiangulina tessellita</i>, <i>Daillydium pentaster</i>, <i>Deltotosoma intonsum</i>, <i>Gorgonisphaeridium discissum</i>, <i>Helosphaeridium microclavatum</i>, <i>Horologinella horologia</i>, <i>Papulogabata annulata</i>, <i>Somphophragma miscellum</i>, and <i>Veryhachium downiei</i>, are closely comparable with coeval assemblages recorded from Australia, Ireland, Portugal, Saudi Arabia, North Africa, South America, and North America. This indicates the close relationship of the Iranian Platform to other parts of the northern Gondwana and southern Laurentian domain during the Late Devonian–Early Carboniferous. Moreover, results of similarity indices of marine microphytoplankton indicate a relatively high degree of similarity between the assemblages of the Khoshyeilagh area and those elsewhere in the Alborz Mountains and the Kerman Basin. Palaeontological evidence indicates that the Khoshyeilagh Formation was deposited in a low-energy, somewhat offshore, normal marine environment within the Alborz Basin, along the Palaeo-Tethys Ocean during this time interval. Furthermore, based on palynological data gathered from Iran, it can be concluded that Iran was an island during this interval of time.
DOI: 10.6084/m9.figshare.12936171
title: The biostratigraphy of the Upper Devonian and lowermost Carboniferous of the Khoshyeilagh area, northeastern Alborz, Iran

description: Diverse and well-preserved marine palynomorphs occur in the Padeha, Khoshyeilagh, and Mobarak formations in the Khoshyeilagh area, northeastern Alborz, northern Iran. The marine palynomorph assemblages consist of acritarchs, prasinophytes, and chitinozoans, comprising 27 genera and 46 species. In addition, the studied sediments contain 20 species of algae, foraminifera, and corals allocated to 11 genera. The vertical distribution of acritarchs and chitinozoans allows the erection within these sediments of three local assemblage zones. Biozone I occurs in the upper part of the Padeha Formation and the basal part of the Khoshyeilagh Formation, suggesting a Frasnian–early Famennian age; Biozone II is present in the Khoshyeilagh Formation and indicates a Famennian age. Biozone III, which occurs in the basal part of the Mobarak Formation, suggests a Tournaisian age for this interval. Many of the palynomorph species, such as <i>Crassiangulina tessellita</i>, <i>Daillydium pentaster</i>, <i>Deltotosoma intonsum</i>, <i>Gorgonisphaeridium discissum</i>, <i>Helosphaeridium microclavatum</i>, <i>Horologinella horologia</i>, <i>Papulogabata annulata</i>, <i>Somphophragma miscellum</i>, and <i>Veryhachium downiei</i>, are closely comparable with coeval assemblages recorded from Australia, Ireland, Portugal, Saudi Arabia, North Africa, South America, and North America. This indicates the close relationship of the Iranian Platform to other parts of the northern Gondwana and southern Laurentian domain during the Late Devonian–Early Carboniferous. Moreover, results of similarity indices of marine microphytoplankton indicate a relatively high degree of similarity between the assemblages of the Khoshyeilagh area and those elsewhere in the Alborz Mountains and the Kerman Basin. Palaeontological evidence indicates that the Khoshyeilagh Formation was deposited in a low-energy, somewhat offshore, normal marine environment within the Alborz Basin, along the Palaeo-Tethys Ocean during this time interval. Furthermore, based on palynological data gathered from Iran, it can be concluded that Iran was an island during this interval of time.
DOI: 10.6084/m9.figshare.12901078.v1
title: Palynology and Organic Petrography of the Tyler Formation (Lower Pennsylvanian), Williston Basin, North Dakota, USA

description: The palynoflora and organic petrography of core samples from the Tyler Formation in the Williston Basin, North Dakota, USA were evaluated to determine their age and depositional environment. Palynoflora are assigned to seven plant groups used by previous authors studying Carboniferous floras. Lycopsid trees, represented by <i>Lycopsora</i> species and <i>Crassispora kosankei</i> are the most abundant and well-preserved miospores recorded. Palynomorphs representing small lycopsids, calamites, cordaites, and conifers, comprise a relatively minor part of the palynoflora. The petrographic component from seven coeval coal samples contain moderate to high mineral content and macerals which are dominated by vitrinite (woody components) and to a lesser extent inertinite and liptinite (lipid-rich plant material). Common vitrinite macerals include collotelinite and collodetrinite, and semifusinite and minor fusinite representing inertinite macerals. The palynoflora are of Early Pennsylvanian age, based on the presence of the age-significant fossils <i>Schulzospora rara</i> and <i>Cirratriradites saturnii</i> together with abundant <i>Lycospora</i> spp. The palynoflora and petrographic data suggest that the Tyler Formation in this location was deposited in a fluvially-dominated delta with some tidal influence. Wet, stagnant anoxic environments (coal swamps) were frequently flooded with clastic material from a fluvial source. Macerals, especially inertinite, imply periods of subaerial exposure, fire, or highly oxygenated waters, and liptinite (lipid-rich plant material), suggests periodic drowning of the coal swamp and formation of shallow lacustrine paleoenvironments.
DOI: 10.6084/m9.figshare.12936171.v1
title: The biostratigraphy of the Upper Devonian of the Khoshyeilagh area, northeastern Alborz, Iran

description: Diverse and well preserved marine palynomorphs occur in the Padeha, Khoshyeilagh, and Mobarak formations in the Khoshyeilagh, central Alborz, north of Iran. The marine palynomorph assemblages consist of acritarchs, prasinophytes, and chitinozoans, comprises 27 genera and 46 species. In addition, the studied sediments contain 20 species of algae, foraminifera, and corals allocated in 11 genera. Vertical distribution of acritarchs and chitinozoans allows erection within these sediments of three local assemblage zones. Biozone I occurs in the upper part of Padeha Formation and basal part of the Khoshyeilagh Formation suggests Frasnian-early Famennian age and Biozone II is present in the Khoshyeilagh Formation and indicates Famennian age. Biozone III, which occurs in the basal part of Mobarak Formation, suggests a Tournaisian age for this interval. Many of the palynomorph groups such as, <i>Crassiangulina tessellita</i>, <i>Deltotosoma intonsum, Daillydium pentaster, Gorgonisphaeridium discissum, Helosphaeridium microclavatum, Horologinella horologia, Papulogabata annulata, Somphophragma miscellum,</i> and <i>Veryhachium downiei</i> are closely comparable with coeval assemblages recorded from the Australia, Ireland, Portugal, Saudi Arabia, North Africa, South America, and North America. This indicates the close relationship of the Iranian Platform to other parts of the northern Gondwana and southern Laurentian Domain during the Late Devonian-Early Carboniferous. Moreover, results of similarity indices of marine microphytoplankton indicate relatively high degree of similarity between the assemblages of Khoshyeilagh area and elsewhere in Alborz Mountains and Kerman Basin. Palaeontological evidences indicate that the Khoshyeilagh formation was deposited in a low energy, somewhat offshore, normal marine environment within the Alborz Basin, along the Palaeo-Tethys Ocean during this time interval. Furthermore, based on palynology data gathered from Iran, it can be concluded that Iran was an island during this interval of time.
DOI: 10.6084/m9.figshare.12854666.v1
title: Palynomorphs in southern Western Australian lake sediments: evidence of climate change and hypersalinity during the Cenozoic

description: This study focuses on five cores in and around three of the hundreds of shallow ephemeral hypersaline lakes distributed in chains along traces of ancient drainages that dominate the southern Western Australian landscape. Cores within and on the shore of Lake Aerodrome (LA1-09, LA2-09), Prado Lake (PL1-09, PL2-09), and Gastropod Lake (GLE1-09) in the Cowan Paleodrainage were drilled as part of a multidisciplinary study to understand the evolution of the lakes. Lithological and palynomorph data provide insights into the region’s the depositional history, and floristic and climate evolution of the region. The nearly 60 m deep LA2-09 core provides the most comprehensive data. The basal ∼15 m interval of this core comprises two distinct lignite units with a clay interbed that preserve a rich palynomorph assemblage of the Werillup Formation. This assemblage is characterized by the first appearance datum (FAD) and last appearance datum (LAD) of key late Eocene taxa that correlate with the Middle <i>Nothofagidies asperus</i> Zone, and is indicative of freshwater swamp surrounded by subtropical to temperate rainforest. Above the upper lignite (except the topmost sample), evaporitic-siliciclastic units preserve a depauperate palynomorph assemblage comprising mostly long-ranging sclerophyllic-xerophilous-halophilic taxa. The pollen <i>Myrtaceidites lipsis</i> constrains the age of the upper ∼23 m interval as Pliocene to Recent. This younger assemblage also preserves reworked palynomorphs from the Werillup Formation and older units, and is identified in the other four cores. The presence of the halophilic green alga <i>Dunaliella</i> in the younger assemblage is used as a proxy for aridity and hypersaline conditions during post-Eocene deposition in southern Western Australia. Its absence in the neutral-alkaline lake water and uppermost core samples of GLE1-09 is either due to predation by the acidophobic gastropod <i>Coxiella</i> residing in the lake, or the fact that the type of <i>Dunaliella</i> preserved in the core samples is acidophilic.
DOI: 10.6084/m9.figshare.12854675.v1
title: Pollen morphology of eight endemic <i>Inula</i> L. (Asteraceae) species in Turkey

description: The pollen morphology of eight endemic species of the genus <i>Inula</i> L. (Asteraceae) – <i>I. helenium</i> subsp. <i>orgyalis</i> (Boiss.) Grierson, <i>I. helenium</i> subsp. <i>vanensis</i> Grierson, <i>I. macrocephala</i> Boiss. & Kotschy ex Boiss., <i>I. discoidea</i> Boiss., <i>I. sarana</i> Boiss., <i>I. fragilis</i> Boiss. & Hausskn., <i>I. anatolica</i> Boiss. and <i>I. sechmenii</i> Hartvig & Strid – distributed in Turkey was studied with light microscopy and scanning electron microscopy. We found that the pollen of these <i>Inula</i> taxa are prolate-spheroidal in shape (except in <i>Inula discoidea</i>), with the polar axis ranging from 19.18 to 33.14 µm and the equatorial diameter ranging from 18.54 to 32.92 µm. The pollen grains are tricolporate and their ornamentation is echinate. The exine thickness ranges from 0.87 to 2.07 µm. As this study demonstrates, results of Principal Component Analysis are revealed that some of the pollen characters, such as spine length and width, are significant morphological characters for taxonomic discrimination of the eight endemic <i>Inula</i> taxa. According to cluster analysis, two main groups of examined taxa are constituted.
DOI: 10.6084/m9.figshare.13317482.v1
title: Expansion of metabolic networks combined with accelerated protein evolution has enabled new cellular traits within the yeast subphylum

description: EC number prediction using DeepECDomain annotation for 332 yeast speciesEssential gene prediction using machine learning for yeast species without experimental dataSingle species GEMs in mat format and panmodel in mat formatGeneMining KO query files for tblastn seach for substrate usage and complex IBranch site result for the trait of Crabtree effect and heat-toleranceSite model result for positively selected site analysis across 332 yeast species plus 11 fungal species<br>
DOI: 10.5281/zenodo.4659749
title: An Excel spreadsheet including eddy covariance-based greenhouse gas (carbon dioxide and methane) fluxes at Yunxiao mangrove flux tower

description: An Excel spreadsheet including eddy covariance-based greenhouse gas (carbon dioxide and methane) fluxes at Yunxiao mangrove flux tower.
DOI: 10.6084/m9.figshare.13315583
title: Comprehensive evolution analysis for 332 yeast species

description: EC number prediction using DeepECDomain annotation for 332 yeast speciesEssential gene prediction using machine learning
DOI: 10.6084/m9.figshare.13315583.v5
title: Comprehensive evolution analysis for 332 yeast species

description: EC number prediction using DeepECDomain annotation for 332 yeast speciesEssential gene prediction using machine learning
DOI: 10.6084/m9.figshare.13315583.v4
title: Comprehensive evolution analysis for 332 yeast species

description: EC number prediction using DeepECDomain annotation for 332 yeast speciesEssential gene prediction using machine learning
DOI: 10.6084/m9.figshare.13317482.v2
title: Comprehensive evolution analysis with genome-scale metabolic models reveals diverse mechanisms in metabolic innovations across 332 yeast species

description: EC number prediction using DeepECDomain annotation for 332 yeast speciesEssential gene prediction using machine learning for yeast species without experimental dataSingle species GEMs in mat format and panmodel in mat formatGeneMining KO query files for tblastn seach for substrate usage and complex IBranch site result for the trait of Crabtree effect and heat-toleranceSite model result for positively selected site analysis across 332 yeast species plus 11 fungal species<br>
DOI: 10.5281/zenodo.4708804
title: Route to Tunable Room Temperature Electric Polarization in SrTiO3-CoFe2O4 Heterostructures

description: Open data for "Route to Tunable Room Temperature Electric Polarization in SrTiO3-CoFe2O4 Heterostructures", published in <em>Journal of Materials Chemistry C (2021)</em> <strong>DOI: 10.1039/d0tc05821a</strong>
DOI: 10.5281/zenodo.4708803
title: Route to Tunable Room Temperature Electric Polarization in SrTiO3-CoFe2O4 Heterostructures

description: Open data for "Route to Tunable Room Temperature Electric Polarization in SrTiO3-CoFe2O4 Heterostructures", published in <em>Journal of Materials Chemistry C (2021)</em> <strong>DOI: 10.1039/d0tc05821a</strong>
DOI: 10.17632/m8zyb8mmtg.1
title: 042321WB
DOI: 10.17632/wtzpc8gyh2.1
title: Electronic and optical properties of zigzag

description: structures
DOI: 10.17632/hz5vt69frn.1
title: The genome of a mangrove plant, Avicennia marina, provides insights into adaptation to coastal intertidal habitats

description: Additional tables supporting the manuscript
DOI: 10.17632/bsh9n6dy7p.1
title: Data for: Acute stress facilitates cognitive inhibition in healthy men: an fNIRS study

description: Data 1, 2, & 3 were used for stress validation. Data 4, 5, & 6 were the behavioral and fNIRS data for the Stroop task.
DOI: 10.17632/4gs7mmjt4c.1
title: Historical charts, soundings and surfaces (DEMs) of western Victoria, Australia

description: This data repository hosts the georeferenced nautical charts, digitised soundings, converted soundings (Australian Height Datum 1994), surface masks and interpolated surfaces (DEMs) of seven historical surveys conducted in western Victoria during the 19th century. These charts produced by H. J. Stanley, J. Barrow and J. B Mason for Portland Bay (1854, 1869 and 1972), Port Fairy (1870), Lady Bay-Warrnambool (1870) and Apollo Bay (1868 and 1889), were obtained in digital format from the State Library Victoria (www.slv.vic.gov.au). For specific characteristics of individual charts refer to Table 1. These nautical charts provide an unique historical perspective of the coast during the time of the surveys. These datasets were used by the author and collaborators to understand sedimentary dynamics and quantify human alterations in the coastal zone, by comparing their surfaces to contemporary Multibeam Echosounding (MBES) bathymetry and Light Detection and Ranging (LiDAR) data. The georeferenced nautical charts and interpolated surfaces are in Geotiff format, and the digitised soundings, converted soundings and surface masks are in shapefile format. Files are compressed and organised in sub-folders inside specific charts.
DOI: 10.17632/2xp4ddwmgx.1
title: Spinney: Post-processing of first-principles calculations of point defects in semiconductors with Python

description: Understanding and predicting the thermodynamic properties of point defects in semiconductors and insulators would greatly aid in the design of novel materials and allow tuning the properties of existing ones. As a matter of fact, first-principles calculations based on density functional theory (DFT) and the supercell approach have become a standard tool for the study of point defects in solids. However, in the dilute limit, of most interest for the design of novel semiconductor materials, the “raw“ DFT calculations require an extensive post-processing. Spinney is an open-source Python package developed with the aim of processing first-principles calculations to obtain several quantities of interest, such as the chemical potential limits that assure the thermodynamic stability of the defect-laden system, defect charge transition levels, defect formation energies, including electrostatic corrections for finite-size effects, and defect and carrier concentrations. In this paper we demonstrate the capabilities of the Spinney code using c-BN, GaN:Mg, TiO_2 and ZnO as examples.
DOI: 10.17632/zv9pdy7m29.1
title: Tables in the article " Mineralogical and geochemical characteristics and ore-forming mechanism of hydrothermal sediments in the middle and southern Okinawa Trough ", Marine Geology.

description: The original data presented here is related to the article "Mineralogical and geochemical characteristics and ore-forming mechanism of hydrothermal sediments in the middle and southern Okinawa Trough", Marine Geology. The data includes sampling information of investigated hydrothermal sediment samples collected from four hydrothermal fields in the middle and southern Okinawa Trough, chemical composition of carbonate-free fraction, characteristics of NASC normalized REE parameters of sediment samples in this study and relevant geologic end members, characteristics of (Gd/Yb)N, percentage of heavy minerals, δEu values of carbonate-free fraction in sediment samples from four hydrothermal fields in the middle and southern Okinawa Trough, and Average values of element enrichment factors of sediment samples in this study. These data can provide useful information to understand the origin and ore-forming mechanism of the hydrothermal sediments, and to provide indicators for hydrothermal activities in the Okinawa Trough.
DOI: 10.17632/65ghfmsbmw.1
title: Aerobic granular sludge- Pharmaceutical compounds and control

description: Raw data from massive parallel sequecing
DOI: 10.17632/4g7wfd5fpb.1
title: YAM2: Yet another library for the M_2 variables using sequential quadratic programming

description: The M_2 variables are devised to extend M_T2 by promoting transverse masses to Lorentz-invariant ones and making explicit use of on-shell mass relations. Unlike simple kinematic variables such as the invariant mass of visible particles, where the variable definitions directly provide how to calculate them, the calculation of the M_2 variables is undertaken by employing numerical algorithms. Essentially, the calculation of M_2 corresponds to solving a constrained minimization problem in mathematical optimization, and various numerical methods exist for the task. We find that the sequential quadratic programming method performs very well for the calculation of M_2, and its numerical performance is even better than the method implemented in the existing software package for M_2. As a consequence of our study, we have developed and released yet another software library, YAM2, for calculating the M_2 variables using several numerical algorithms.
DOI: 10.17632/29wv8nmbgn.1
title: Numerical solution of the Boltzmann equation with S-model collision integral using tensor decompositions

description: The paper presents a new solver for the numerical solution of the Boltzmann kinetic equation with the Shakhov model collision integral (S-model) for arbitrary spatial domains. The numerical method utilizes the Tucker decomposition, which reduces the required computer memory for up to 100 times, even on a moderate velocity grid. This improvement is achieved by representing the distribution function values on a structured velocity grid as a 3D tensor in the Tucker format. The resulting numerical method makes it possible to solve complex 3D problems on modern desktop computers. Our implementation may serve as a prototype code for researchers concerned with the numerical solution of kinetic equations in 3D domains using a discrete velocity method.
DOI: 10.17632/rb34cg9xk7.1
title: LINF_Genome sequence

description: Nucleotide sequence of the 36 chromosomes comprising the Leishmania infantum genome (JPCM5 strain)
DOI: 10.17632/ydbypjtfht.1
title: Covid-19 Dataset for Estimation of Mindfulness, Hardiness and Stress Level in Iranian Public

description: The dataset comprises novel aspects in relation to estimate the mindfulness, hardiness, and stress level in Iranian public due to of Covid-19 and associated impacts. This dataset can be used by the intelligent algorithms, specifically machine learning and pattern analysis methods to build multi-cultural predictive systems that might be useful to minimize the Covid-19 impacts specifically, stress level in public. Furthermore, this dataset would be helpful for researchers, professionals and health care experts, psychologists and policy makers for the decision making and investigating the psychological impacts of COVID-19 around the world. The data could also be helpful for researchers to develop future protocols in mental health, such as mindfulness-based protocols for reducing the stress of Covid-19, which is a significant concern these days.
DOI: 10.17632/7x73hh7d7t.1
title: Over-expression of Th2-related molecules in the skin of patients with eosinophilic dermatosis of hematologic malignancy

description: Supplementary Figure (refers to: Over-expression of Th2-related molecules in the skin of patients with eosinophilic dermatosis of hematologic malignancy): Representative images reporting hematoxylin and eosin (H&E) and CD3, CD4, CD8, CD5, T-bet, GATA3, FOXP3, CD19, CD20, CD79a, IL-4, IL-31 and Eotaxin staining of healthy control samples in superficial (upper panels) and mid (lower panels) dermis (lower panels) of healthy skin controls; Magnification ×40, inset ×200 (Scale bars: 500µm, inset 100 µm).
DOI: 10.17632/zpn8896fsr.4
title: Problems of the Modern Textology

description: Textology Today: Results, Problems, Methods Tekstologiya - otrasl filologii, izuchayushchaya proizvedeniya pismennosti, literatury i folklora v celyah kriticheskoj proverki, ustanovleniya i organizacii ih tekstov dlya dalnejshego issledovaniya, interpretacii i publikacii. Osnovnoj metod tekstologii - filologicheskij analiz teksta, opirayushchijsya na svoeobrazie literatury kak yavleniya istoricheskogo i kak vida iskusstva.