cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24555883.v3
title: Smith-Vidaurre_et_al_2023_ABISSMALMethodsPaper

description: We make data available for a manuscript associated with the development of an automated behavioral tracking system: ABISSMAL (Automated Behavioral tracking by Integrating Sensors that Survey Movements Around a target Location). More information about these datasets is available in the README files.
DOI: 10.6084/m9.figshare.24555883.v2
title: Smith-Vidaurre_et_al_2023_ABISSMALMethodsPaper

description: We make data available for a manuscript associated with the development of an automated behavioral tracking system: ABISSMAL (Automated Behavioral tracking by Integrating Sensors that Survey Movements Around a target Location). More information about these datasets is available in the README files.
DOI: 10.34943/5ee59b4a-4d00-477d-81e1-25f293a35b81
title: Barkley Canyon Conductivity Temperature Depth Deployed 2023-09-12

description: The Sea-Bird SeaCAT SBE19plus V2 6813 was deployed on 2023-09-12 at Barkley Canyon. Barkley Canyon is a submarine canyon located on the continental shelf and slope break. Features include exposed gas hydrates and their associated ecosystems. Accumulation and movement of sediment, upwelling, and plankton blooms are studied in this area. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/aeabaeb7-d385-4061-8c0a-0ad3f54758ea
title: Barkley Canyon Oxygen Sensor Deployed 2023-09-12

description: The Sea-Bird SBE 63 Dissolved Oxygen Sensor 630639 was deployed on 2023-09-12 at Barkley Canyon. Barkley Canyon is a submarine canyon located on the continental shelf and slope break. Features include exposed gas hydrates and their associated ecosystems. Accumulation and movement of sediment, upwelling, and plankton blooms are studied in this area. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5519/qd.335iv4l0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7 records)
DOI: 10.6084/m9.figshare.24578869
title: main experiment

description: The presence of pictorial depth cues in virtual environments is important for minimising distortions driven by unnatural viewing conditions (e.g., vergence-accommodation conflict). Our aim was to determine how different pictorial depth cues affect size constancy in virtual environments under binocular and monocular viewing conditions.
DOI: 10.6084/m9.figshare.24578869.v1
title: main experiment

description: The presence of pictorial depth cues in virtual environments is important for minimising distortions driven by unnatural viewing conditions (e.g., vergence-accommodation conflict). Our aim was to determine how different pictorial depth cues affect size constancy in virtual environments under binocular and monocular viewing conditions.
DOI: 10.5281/zenodo.10139941
title: Supplementary Data
DOI: 10.5281/zenodo.10140845
title: Supplementary Data
DOI: 10.18739/a2rx93f8n
title: Textile Database from the sites of Möðruvellir, Bessastaðir and Reykholt, Iceland stored at the National Museum of Iceland. Date of the material: Viking Age - 10th century - 18th century

description: Datasets, for Icelandic sites, Möðruvellir (a monastic site in northern Iceland) Bessastaðir (the seat of the Icelandic parlement and Danish colonial authorities) and Reykholt (an elite, and church parish site in Western Iceland). This scientific investigation will employ a mixed methodology to document and analyze textile collections from rural and urban, North Atlantic and European contexts. Accelerator Mass Spectrometry (AMS), dye and material analyses, strontium isotope analyses, and X-Ray Fluorescence (pXRF) will be employed to further characterize North Atlantic collections and compare them to previously collected data assemblages. Strontium isotope analyses and portable X-ray fluorescence data of archaeological samples and modern wool will be carried out in order to map isotopic signatures geographically and provide insight into the movements of textiles and the compounds used in their production across long distances, such as to North America, northern Europe and Eurasia. Bringing together analyses ranging in scale from trans-continental trade to assessments of individual women's handiwork and to their products' elemental and isotopic signatures, this project (Archaeological Investigations of the Eastern North Atlantic Trade and Globalizing Economic Systems; Award no. 1733914) has transformative potential to provide an engendered, interdisciplinary perspective on trade, women, and the emergence of early globalized economies in the North.
DOI: 10.6084/m9.figshare.24578884
title: metadata_barcodes_coi_sequencing2.fasta

description: environmental DNA barcode metadata file
DOI: 10.6084/m9.figshare.24578884.v1
title: metadata_barcodes_coi_sequencing2.fasta

description: environmental DNA barcode metadata file
DOI: 10.6084/m9.figshare.24578896
title: 7829-P1-00-01_S1_L001_R1_001.fastq.gz

description: environmental DNA metabarcoding sequencing data<br>
DOI: 10.6084/m9.figshare.24578896.v1
title: 7829-P1-00-01_S1_L001_R1_001.fastq.gz

description: environmental DNA metabarcoding sequencing data<br>
DOI: 10.5281/zenodo.8077870
title: Emulator of PR-DNS: Accelerating Dynamical Fields with Neural Operators in Particle-Resolved Direct Numerical Simulation

description: The codes directory includes the various machine learning models, such as FNO, UNet and ResNet. R128_init1 and R128_init2 are the PR-DNS time step simulations at different initial conditions. R64_init2, R128_init2 and R256_init2 are the PR-DNS time step simulations at different resolutions.
DOI: 10.6084/m9.figshare.24578839
title: perm_day1_all

description: Compiled results of permutation values. The code for reproducing these permutations is in the associated R script.<br>day1_gxg_null_mean: Mean value of the posterior parameter estimate for genotype x genotype epistasis of the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_gxg_null_median: Median value of the posterior parameter estimate for genotype x genotype epistasis in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_fg_null_mean: Mean value of the posterior parameter estimate for focal genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_fg_null_median: Median value of the posterior parameter estimate for focal genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_pg_null_mean: Mean value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_pg_null_median: Median value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_trial_null_mean: Mean value of the posterior parameter estimate for day 1 trial number in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_trial_null_median: Median value of the posterior parameter estimate for day 1 trial number in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasets
DOI: 10.6084/m9.figshare.24578839.v1
title: perm_day1_all

description: Compiled results of permutation values. The code for reproducing these permutations is in the associated R script.<br>day1_gxg_null_mean: Mean value of the posterior parameter estimate for genotype x genotype epistasis of the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_gxg_null_median: Median value of the posterior parameter estimate for genotype x genotype epistasis in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_fg_null_mean: Mean value of the posterior parameter estimate for focal genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_fg_null_median: Median value of the posterior parameter estimate for focal genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_pg_null_mean: Mean value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_pg_null_median: Median value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_trial_null_mean: Mean value of the posterior parameter estimate for day 1 trial number in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasetsday1_trial_null_median: Median value of the posterior parameter estimate for day 1 trial number in the Focal Day 1 model, values were generated by analyzing permuted day 1 datasets
DOI: 10.6084/m9.figshare.24578881
title: perm_day2_all

description: perm_day2_all - Compiled results of permutation values form day 2 of experimental trials. The code for reproducing these permutations is in the associated R script.day2_gxg_null_mean: Mean value of the posterior parameter estimate for genotype x genotype epistasis of the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_gxg_null_median: Median value of the posterior parameter estimate for genotype x genotype epistasis in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_fg_null_mean: Mean value of the posterior parameter estimate for focal genotype in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_fg_null_median: Median value of the posterior parameter estimate for focal genotype in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_pg_null_mean: Mean value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 2 model, values were generated by analyzing permuted day 1 datasetsday2_pg_null_median: Median value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasets<br>
DOI: 10.6084/m9.figshare.24578881.v1
title: perm_day2_all

description: perm_day2_all - Compiled results of permutation values form day 2 of experimental trials. The code for reproducing these permutations is in the associated R script.day2_gxg_null_mean: Mean value of the posterior parameter estimate for genotype x genotype epistasis of the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_gxg_null_median: Median value of the posterior parameter estimate for genotype x genotype epistasis in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_fg_null_mean: Mean value of the posterior parameter estimate for focal genotype in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_fg_null_median: Median value of the posterior parameter estimate for focal genotype in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasetsday2_pg_null_mean: Mean value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 2 model, values were generated by analyzing permuted day 1 datasetsday2_pg_null_median: Median value of the posterior parameter estimate for day 1 partner genotype in the Focal Day 2 model, values were generated by analyzing permuted day 2 datasets<br>
DOI: 10.18739/a2n58cn4t
title: Strontium isotope extraction from wool, leaching and preparation method (2019-2020) carried out at Brown University

description: Methodology for extracting strontium (Sr) isotopes from wool used to trace the movement of cloth and the trade in cloth across the North Atlantic. This methodology presented here is based on work by Karen M. Frei. These are the results from students at Brown, replicating Frei's method for leaching and extracting strontium from archaeological wool samples. Description of the project: This research was part of the project: Archaeological Investigations of the Eastern North Atlantic Trade and Globalizing Economic Systems (Award no. 1733914) and sought to provide new data on patterns of household-scale production and consumption in the eastern North Atlantic islands and assess the ways that textiles from the rural North Atlantic islands were used, consumed, and traded within the emerging medieval and post-medieval urban harbors of Bergen, Trondheim, and Borgund in Norway. Over the course of 1000 years, trade linking the Norse North Atlantic colonies waxed and waned. Early medieval networks linked the North Atlantic islands primarily with Norway for supplies of key resources, yet archaeological data suggest that by the mid-11th century Icelandic women wove in response to demands for products sold in London and beyond. By the 13th century, these networks expanded, with both the North Atlantic and North Sea integrated into the Hanseatic League's networks linking northern Europe and beyond. From the 17th century onwards, the North Atlantic was integrated into increasingly industrial mercantile networks, controlled through monopolistic practices by the Danish state, linking the cities of northwestern Europe with colonies and consumers across the world. This project was: (1) to assess the regional characteristics and trajectories of eastern North Atlantic women's textile production, (2) connect these collections and patterns with textile assemblages from emerging and central trading harbors in Scandinavia and beyond, and (3) link these results with previous NSF-funded work.
DOI: 10.6084/m9.figshare.24578899
title: 7829-P1-00-01_S1_L001_R2_001.fastq.gz

description: environmental DNA sequencing data<br>
DOI: 10.6084/m9.figshare.24578899.v1
title: 7829-P1-00-01_S1_L001_R2_001.fastq.gz

description: environmental DNA sequencing data<br>
DOI: 10.5517/ccdc.csd.cc2gjvjd
title: CCDC 2280314: Experimental Crystal Structure Determination

description: Related Article: Lirong Zhang, Huiling Zhao, Xin Liu, Gele Teri, Menghe Baiyin|2023|Phys.Chem.Chem.Phys.(PCCP)|25|29709|doi:10.1039/D3CP04074G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gk99n
title: CCDC 2280741: Experimental Crystal Structure Determination

description: Related Article: Bal Raju Kammari, Venkata Narasayya Saladi, Abhijit Garai, Rajeshwar Reddy Sagyam, Rajan Thirumalai Srinivasan, Vijayavitthal T. Mathad|2023|Cryst.Growth Des.|23|8065|doi:10.1021/acs.cgd.3c00824
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gk9bp
title: CCDC 2280742: Experimental Crystal Structure Determination

description: Related Article: Bal Raju Kammari, Venkata Narasayya Saladi, Abhijit Garai, Rajeshwar Reddy Sagyam, Rajan Thirumalai Srinivasan, Vijayavitthal T. Mathad|2023|Cryst.Growth Des.|23|8065|doi:10.1021/acs.cgd.3c00824
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl1x1
title: CCDC 2281473: Experimental Crystal Structure Determination

description: Related Article: Mengdan Yu, Chuanguo Cui, Natarajan Mookan, Zhiyin Xiao, Wei Zhong|2024|J.Mol.Struct.|1296|136840|doi:10.1016/j.molstruc.2023.136840
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl418
title: CCDC 2281539: Experimental Crystal Structure Determination

description: Related Article: Hui Guo, Dongjing Hong, Peng Cui|2023|Dalton Trans.|52|15672|doi:10.1039/D3DT02519E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl43b
title: CCDC 2281541: Experimental Crystal Structure Determination

description: Related Article: Hui Guo, Dongjing Hong, Peng Cui|2023|Dalton Trans.|52|15672|doi:10.1039/D3DT02519E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl44c
title: CCDC 2281542: Experimental Crystal Structure Determination

description: Related Article: Hui Guo, Dongjing Hong, Peng Cui|2023|Dalton Trans.|52|15672|doi:10.1039/D3DT02519E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl45d
title: CCDC 2281543: Experimental Crystal Structure Determination

description: Related Article: Hui Guo, Dongjing Hong, Peng Cui|2023|Dalton Trans.|52|15672|doi:10.1039/D3DT02519E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl46f
title: CCDC 2281544: Experimental Crystal Structure Determination

description: Related Article: Hui Guo, Dongjing Hong, Peng Cui|2023|Dalton Trans.|52|15672|doi:10.1039/D3DT02519E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl47g
title: CCDC 2281545: Experimental Crystal Structure Determination

description: Related Article: Hui Guo, Dongjing Hong, Peng Cui|2023|Dalton Trans.|52|15672|doi:10.1039/D3DT02519E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24578644
title: QUACK: Hindering Deserialization Attacks via Static Duck Typing

description: This is the artifact for our NDSS '24 paper "QUACK: Hindering Deserialization Attacks via Static Duck Typing".
DOI: 10.6084/m9.figshare.24578644.v1
title: QUACK: Hindering Deserialization Attacks via Static Duck Typing

description: This is the artifact for our NDSS '24 paper "QUACK: Hindering Deserialization Attacks via Static Duck Typing".
DOI: 10.3886/e193684v1-143114
title: Data and Code for: Why Did the Best Prepared Country in the World Fare So Poorly During COVID?

description: These files contain the programs and data for the journal article “Why Did the Best Prepared Country in the World Fare So Poorly During COVID?”
description: NA
description: Response Rates: NA
description: NA
description: country-level. Smallest Geographic Unit: country-level
description: other;
DOI: 10.5281/zenodo.10002138
title: Coordinate files from LipIDens: Simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins.

description: Coordinate files from the first and last frame of coarse-grained (CG) and atomistic (AT) molecular dynamics (MD) simulations used throughout the LipIDens pipeline.
CG simulations were run for HHAT, OTOP1, ELIC, MscS, TRPV6, ChRmine, Ste2, Connexin-50, NPC1 and the PAT complex. All CG simulations were run for 10 x 15 μs with the exception of NPC1 which was simulated for 10 x 30 μs.
AT simulations were run for HHAT (5 x 200 ns) and ELIC (3 x 200 ns) in apo configurations.
File description:
Directories for each protein are listed with the suffix CG or AT used to indicate the simulation resolution. 
md_fit_firstframe_X.gro - GROMACS structure file for the first frame of replicate X. 
md_fit_lastframe_X.gro - GROMACS structure file for the last frame of replicate X.
DOI: 10.5281/zenodo.10002139
title: Coordinate files from LipIDens: Simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins.

description: Coordinate files from the first and last frame of coarse-grained (CG) and atomistic (AT) molecular dynamics (MD) simulations used throughout the LipIDens pipeline.
CG simulations were run for HHAT, OTOP1, ELIC, MscS, TRPV6, ChRmine, Ste2, Connexin-50, NPC1 and the PAT complex. All CG simulations were run for 10 x 15 μs with the exception of NPC1 which was simulated for 10 x 30 μs.
AT simulations were run for HHAT (5 x 200 ns) and ELIC (3 x 200 ns) in apo configurations.
File description:
Directories for each protein are listed with the suffix CG or AT used to indicate the simulation resolution. 
md_fit_firstframe_X.gro - GROMACS structure file for the first frame of replicate X. 
md_fit_lastframe_X.gro - GROMACS structure file for the last frame of replicate X.