cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14717607.v1
title: Supplementary Material for: Association between Circulating Protein C Levels and Incident Dementia: The Atherosclerosis Risk in Communities Study

description: <b><i>Introduction:</i></b> Hemostasis depends on the delicate balance between coagulants and anticoagulants. Higher levels of circulating coagulants have been associated with higher risk of cerebral infarctions and dementia. In contrast, higher levels of circulating protein C, an endogenous anticoagulant, have been associated with lower risk of cerebral infarctions, and the association between protein C levels and the risk of dementia is unknown. The goal of this study was to evaluate the association of circulating protein C levels in midlife and late life with incident dementia. <b><i>Methods:</i></b> Circulating protein C levels were measured using blood samples collected at the midlife baseline (1987–1989) and the late-life baseline (2011–2013) among 14,462 and 3,614 participants, respectively, in the Atherosclerosis Risk in Communities study. Protein C levels were measured using enzyme-linked immunosorbent assay at midlife and a modified aptamer-based assay at late life. Participants were followed up to 2013 from midlife and up to 2017 from late life. Incident dementia was ascertained during the follow-up periods using in-person cognitive and functional assessment, informant interviews, and International Classification of Diseases codes at hospitalization discharge and on death certificates. Cause-specific Cox regression models were used to evaluate the association between quintiles of circulating protein C and incident dementia. <b><i>Results:</i></b> From midlife (mean age of 54), 1,389 incident dementia events were observed over a median follow-up of 23 years. From late life (mean age of 75), 353 incident dementia events were observed over a median follow-up of 4.9 years. At both midlife and late life, circulating protein C had an inverse association with incident dementia after adjusting for demographic, vascular, and hemostatic risk factors, incident stroke as time-dependent covariate, and incorporating stabilized weights based on propensity scores (quintile 5 vs. quintile 1 as the reference, midlife hazard ratio 0.80, 95% confidence interval 0.66–0.96, <i>p</i> value for trend 0.04; late-life hazard ratio 0.84, 95% confidence interval: 0.55–1.28, <i>p</i> value for trend 0.04). <b><i>Discussion/Conclusion:</i></b> Circulating protein C has an inverse association with incident dementia independent of established risk factors, including stroke. Our results suggest studying anticoagulants in addition to coagulants can increase our understanding on the relationship between hemostasis and dementia.
DOI: 10.34740/kaggle/dsv/2296151
title: Anthony Fauci Emails - The Face of US on COVID
DOI: 10.34740/kaggle/dsv/2296175
title: Generated_NPs
DOI: 10.18430/m37mqn
title: X-ray diffraction data for the crystal structure of class C beta lactamase from Rhodobacter sphaeroides (7MQN)
DOI: 10.5281/zenodo.4893109
title: Crowdsourced air traffic data from The OpenSky Network 2020 [CC-BY]

description: <strong>Motivation</strong> The data in this dataset is derived and cleaned from the full OpenSky dataset to illustrate the development of air traffic during the COVID-19 pandemic. It spans all flights seen by the network's more than 2500 members since 1 January 2019. More data will be periodically included in the dataset until the end of the COVID-19 pandemic. <strong>License</strong> Creative Commons CC-BY The only difference with the original dataset comes from anonymised aircraft information. <strong>Disclaimer</strong> The data provided in the files is provided as is. Despite our best efforts at filtering out potential issues, some information could be erroneous. Origin and destination airports are computed online based on the ADS-B trajectories on approach/takeoff: no crosschecking with external sources of data has been conducted.<br> Fields <strong>origin</strong> or <strong>destination</strong> are empty when no airport could be found. Aircraft information come from the OpenSky aircraft database. Fields <strong>typecode</strong> and <strong>registration</strong> are empty when the aircraft is not present in the database. <strong>Description of the dataset</strong> One file per month is provided as a csv file with the following features: <strong>callsign</strong>: the identifier of the flight displayed on ATC screens (usually the first three letters are reserved for an airline: AFR for Air France, DLH for Lufthansa, etc.) <strong>number</strong>: the commercial number of the flight, when available (the matching with the callsign comes from public open API) <strong>aircraft_uid</strong>: a unique anonymised identifier for aircraft; <strong>typecode</strong>: the aircraft model type (when available); <strong>origin</strong>: a four letter code for the origin airport of the flight (when available); <strong>destination</strong>: a four letter code for the destination airport of the flight (when available); <strong>firstseen</strong>: the UTC timestamp of the first message received by the OpenSky Network; <strong>lastseen</strong>: the UTC timestamp of the last message received by the OpenSky Network; <strong>day</strong>: the UTC day of the last message received by the OpenSky Network; <strong>latitude_1</strong>, <strong>longitude_1</strong>, <strong>altitude_1</strong>: the first detected position of the aircraft; <strong>latitude_2</strong>, <strong>longitude_2</strong>, <strong>altitude_2</strong>: the last detected position of the aircraft. <strong>Examples</strong> Possible visualisations and a more detailed description of the data are available at the following page:<br> &lt;https://traffic-viz.github.io/scenarios/covid19.html&gt; <strong>Credit</strong> Martin Strohmeier, Xavier Olive, Jannis Lübbe, Matthias Schäfer, and Vincent Lenders<br> <strong>"</strong>Crowdsourced air traffic data from the OpenSky Network 2019–2020<strong>"</strong><br> <em>Earth System Science Data</em> 13(2), 2021<br> https://doi.org/10.5194/essd-13-357-2021
DOI: 10.5281/zenodo.4893122
title: Improved Italian - Rainfall Extreme Dataset (I2-RED)

description: The I<sup>2</sup>-RED (Improved I-RED) database includes the annual maximum rainfall depths in 1, 3, 6, 12 and 24 consecutive hours from more than 5000 rain gauge stations across Italy, recorded starting from the early 1900s. All the rainfall measurements included in the database are expressed in mm, while the positions of all the rain gauges are converted in the Universal Transverse Mercator coordinate system (WGS 84 UTM 32 N - EPSG 32632). An advanced data quality control in terms of consistency, redundancy, gap-filling of records and systematic geographical checks has been carried out while creating I<sup>2</sup>-RED.
DOI: 10.5281/zenodo.4065266
title: Improved Italian - Rainfall Extreme Dataset (I2-RED)

description: The I<sup>2</sup>-RED (Improved I-RED) database includes the annual maximum rainfall depths in 1, 3, 6, 12 and 24 consecutive hours from more than 5000 rain gauge stations across Italy, recorded starting from the early 1900s. All the rainfall measurements included in the database are expressed in mm, while the positions of all the rain gauges are converted in the Universal Transverse Mercator coordinate system (WGS 84 UTM 32 N - EPSG 32632). An advanced data quality control in terms of consistency, redundancy, gap-filling of records and systematic geographical checks has been carried out while creating I<sup>2</sup>-RED.
DOI: 10.34740/kaggle/dsv/2296214
title: 2021 World Population (updated daily)
DOI: 10.15468/qm8bsy
title: Additions to the deep-sea echiuran (Echiura) fauna of the North-East Atlantic

description: This dataset contains the digitized treatments in Plazi based on the original journal article Biseswar, Ramlall (2006): Additions to the deep-sea echiuran (Echiura) fauna of the North-East Atlantic. Zoosystema 28 (4): 853-864, DOI: http://doi.org/10.5281/zenodo.4689879
DOI: 10.5281/zenodo.4892884
title: Benchmark results for the ndzip-gpu floating point compressor

description: These are tabular benchmark results collected for the ndzip-gpu floating point compressor (GitHub, DOI) as well as a range of other general-purpose and floating-point compressors on both CPU and GPU. The following algorithms were examined: ndzip-gpu, current version on dataset submission to Zenodo ndzip (SIMD CPU implementation) MPC 1.2 GFC 2.2 cudppCompress from CUDPP 2.3 ZFP 0.5.5 fpzip 1.3.0 LZMA (liblzma 5.2.5) NVCOMP 2.0 schemes LZ4 and Cascaded Compressor and decompressor performance was evaluated on the following systems: One node of the Marconi-100 supercomputer, featuring dual POWER9 AC922 CPUs with 256 GB RAM and four Nvidia Tesla <strong>V100</strong> Volta HPC GPUs (Compute Capability 7.0). One AMD Ryzen 9 3900X desktop system with 64~GB RAM and one Nvidia RTX <strong>2070</strong> SUPER mid-range Turing consumer GPU (Compute Capability 7.5) One Nvidia DGX A100 node featuring dual AMD EPYC 7742 CPUs with 1 TB RAM and eight Nvidia <strong>A100</strong> 40GB Ampere HPC GPUs (Compute Capability 8.0) One dual-socket AMD EPYC 7282 node with 256 GB RAM and four Nvidia RTX <strong>3090</strong> high-end Ampere consumer GPUs (Compute Capability 8.6) Software and compilers used for evaluation: Clang 10.0 CUDA 11.0 to 11.3 Linux Test datasets are described in the whitepaper Fabian Knorr, Peter Thoman, and Thomas Fahringer: "Datasets for benchmarking floating-point compressors", arXiv.org, 2020. Each configuration (CSV line) on each system was benchmarked at least 5 times and for at least 1 second in total. For ndzip-gpu, the second number in the file name (-128, -256) indicates the (tunable) threads per block. This is evaluated for reasons of parameter tuning, the values we deem optimal are 256 for single-precision and 512 for double-precision data.
DOI: 10.5281/zenodo.4892883
title: Benchmark results for the ndzip-gpu floating point compressor

description: These are tabular benchmark results collected for the ndzip-gpu floating point compressor (GitHub, DOI) as well as a range of other general-purpose and floating-point compressors on both CPU and GPU. The following algorithms were examined: ndzip-gpu, current version on dataset submission to Zenodo ndzip (SIMD CPU implementation) MPC 1.2 GFC 2.2 cudppCompress from CUDPP 2.3 ZFP 0.5.5 fpzip 1.3.0 LZMA (liblzma 5.2.5) NVCOMP 2.0 schemes LZ4 and Cascaded Compressor and decompressor performance was evaluated on the following systems: One node of the Marconi-100 supercomputer, featuring dual POWER9 AC922 CPUs with 256 GB RAM and four Nvidia Tesla <strong>V100</strong> Volta HPC GPUs (Compute Capability 7.0). One AMD Ryzen 9 3900X desktop system with 64~GB RAM and one Nvidia RTX <strong>2070</strong> SUPER mid-range Turing consumer GPU (Compute Capability 7.5) One Nvidia DGX A100 node featuring dual AMD EPYC 7742 CPUs with 1 TB RAM and eight Nvidia <strong>A100</strong> 40GB Ampere HPC GPUs (Compute Capability 8.0) One dual-socket AMD EPYC 7282 node with 256 GB RAM and four Nvidia RTX <strong>3090</strong> high-end Ampere consumer GPUs (Compute Capability 8.6) Software and compilers used for evaluation: Clang 10.0 CUDA 11.0 to 11.3 Linux Test datasets are described in the whitepaper Fabian Knorr, Peter Thoman, and Thomas Fahringer: "Datasets for benchmarking floating-point compressors", arXiv.org, 2020. Each configuration (CSV line) on each system was benchmarked at least 5 times and for at least 1 second in total. For ndzip-gpu, the second number in the file name (-128, -256) indicates the (tunable) threads per block. This is evaluated for reasons of parameter tuning, the values we deem optimal are 256 for single-precision and 512 for double-precision data.
DOI: 10.34740/kaggle/dsv/2296236
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.15468/xgvp9p
title: Clarifications of the identities of Paguristes balanophilus Alcock, 1905 and P. calvus Alcock, 1905 (Crustacea, Decapoda, Anomura, Paguroidea, Diogenidae), and the description of another broadly distributed new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rahayu, Dwi Listyo, McLAUGHLIN, Patsy A. (2006): Clarifications of the identities of Paguristes balanophilus Alcock, 1905 and P. calvus Alcock, 1905 (Crustacea, Decapoda, Anomura, Paguroidea, Diogenidae), and the description of another broadly distributed new species. Zoosystema 28 (4): 865-886, DOI: http://doi.org/10.5281/zenodo.4689897
DOI: 10.15468/hzn9gn
title: The hermit crabs Paguristes Dana, 1851 s. l. (Crustacea, Decapoda, Anomura, Diogenidae) from the western Indian Ocean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rahayu, Dwi Listyo (2007): The hermit crabs Paguristes Dana, 1851 s. l. (Crustacea, Decapoda, Anomura, Diogenidae) from the western Indian Ocean. Zoosystema 29 (3): 515-534, DOI: http://doi.org/10.5281/zenodo.4689915
DOI: 10.6084/m9.figshare.14717623.v1
title: Supp7. Xu et al. phylogenetic data matrix (TNT file) from Anatomy and systematics of the diplodocoid <i>Amphicoelias altus</i> supports high sauropod dinosaur diversity in the Upper Jurassic Morrison Formation of the USA

description: Sauropod dinosaurs were an abundant and diverse component of the Upper Jurassic Morrison Formation of the USA, with 24 currently recognized species. However, some authors consider this high diversity to have been ecologically unviable and the validity of some species has been questioned, with suggestions that they represent growth series (ontogimorphs) of other species. Under this scenario, high sauropod diversity in the Late Jurassic of North America is greatly overestimated. One putative ontogimorph is the enigmatic diplodocoid <i>Amphicoelias altus</i>, which has been suggested to be synonymous with <i>Diplodocus</i>. Given that <i>Amphicoelias</i> was named first, it has priority and thus <i>Diplodocus</i> would become its junior synonym. Here, we provide a detailed re-description of <i>A. altus</i> in which we restrict it to the holotype individual and support its validity, based on three autapomorphies. Constraint analyses demonstrate that its phylogenetic position within Diplodocoidea is labile, but it seems unlikely that <i>Amphicoelias</i> is synonymous with <i>Diplodocus</i>. As such, our re-evaluation also leads us to retain <i>Diplodocus</i> as a distinct genus. There is no evidence to support the view that any of the currently recognized Morrison sauropods are ontogimorphs. Available data indicate that sauropod anatomy did not dramatically alter once individuals approached maturity. Furthermore, subadult sauropod individuals are not prone to stemward slippage in phylogenetic analyses, casting doubt on the possibility that their taxonomic affinities are substantially misinterpreted. An anatomical feature can have both an ontogenetic and phylogenetic signature, but the former does not outweigh the latter when other characters overwhelmingly support the affinities of a taxon. Many Morrison Formation sauropods were spatio-temporally and/or ecologically separated from one another. Combined with the biases that cloud our reading of the fossil record, we contend that the number of sauropod dinosaur species in the Morrison Formation is currently likely to be underestimated, not overestimated.
DOI: 10.6084/m9.figshare.14717617.v1
title: Supp5. Mannion et al. phylogenetic data matrix (TNT file) from Anatomy and systematics of the diplodocoid <i>Amphicoelias altus</i> supports high sauropod dinosaur diversity in the Upper Jurassic Morrison Formation of the USA

description: Sauropod dinosaurs were an abundant and diverse component of the Upper Jurassic Morrison Formation of the USA, with 24 currently recognized species. However, some authors consider this high diversity to have been ecologically unviable and the validity of some species has been questioned, with suggestions that they represent growth series (ontogimorphs) of other species. Under this scenario, high sauropod diversity in the Late Jurassic of North America is greatly overestimated. One putative ontogimorph is the enigmatic diplodocoid <i>Amphicoelias altus</i>, which has been suggested to be synonymous with <i>Diplodocus</i>. Given that <i>Amphicoelias</i> was named first, it has priority and thus <i>Diplodocus</i> would become its junior synonym. Here, we provide a detailed re-description of <i>A. altus</i> in which we restrict it to the holotype individual and support its validity, based on three autapomorphies. Constraint analyses demonstrate that its phylogenetic position within Diplodocoidea is labile, but it seems unlikely that <i>Amphicoelias</i> is synonymous with <i>Diplodocus</i>. As such, our re-evaluation also leads us to retain <i>Diplodocus</i> as a distinct genus. There is no evidence to support the view that any of the currently recognized Morrison sauropods are ontogimorphs. Available data indicate that sauropod anatomy did not dramatically alter once individuals approached maturity. Furthermore, subadult sauropod individuals are not prone to stemward slippage in phylogenetic analyses, casting doubt on the possibility that their taxonomic affinities are substantially misinterpreted. An anatomical feature can have both an ontogenetic and phylogenetic signature, but the former does not outweigh the latter when other characters overwhelmingly support the affinities of a taxon. Many Morrison Formation sauropods were spatio-temporally and/or ecologically separated from one another. Combined with the biases that cloud our reading of the fossil record, we contend that the number of sauropod dinosaur species in the Morrison Formation is currently likely to be underestimated, not overestimated.
DOI: 10.6084/m9.figshare.14717611.v1
title: Supp6. Whitlock and Wilson Mantilla phylogenetic data matrix (TNT file) from Anatomy and systematics of the diplodocoid <i>Amphicoelias altus</i> supports high sauropod dinosaur diversity in the Upper Jurassic Morrison Formation of the USA

description: Sauropod dinosaurs were an abundant and diverse component of the Upper Jurassic Morrison Formation of the USA, with 24 currently recognized species. However, some authors consider this high diversity to have been ecologically unviable and the validity of some species has been questioned, with suggestions that they represent growth series (ontogimorphs) of other species. Under this scenario, high sauropod diversity in the Late Jurassic of North America is greatly overestimated. One putative ontogimorph is the enigmatic diplodocoid <i>Amphicoelias altus</i>, which has been suggested to be synonymous with <i>Diplodocus</i>. Given that <i>Amphicoelias</i> was named first, it has priority and thus <i>Diplodocus</i> would become its junior synonym. Here, we provide a detailed re-description of <i>A. altus</i> in which we restrict it to the holotype individual and support its validity, based on three autapomorphies. Constraint analyses demonstrate that its phylogenetic position within Diplodocoidea is labile, but it seems unlikely that <i>Amphicoelias</i> is synonymous with <i>Diplodocus</i>. As such, our re-evaluation also leads us to retain <i>Diplodocus</i> as a distinct genus. There is no evidence to support the view that any of the currently recognized Morrison sauropods are ontogimorphs. Available data indicate that sauropod anatomy did not dramatically alter once individuals approached maturity. Furthermore, subadult sauropod individuals are not prone to stemward slippage in phylogenetic analyses, casting doubt on the possibility that their taxonomic affinities are substantially misinterpreted. An anatomical feature can have both an ontogenetic and phylogenetic signature, but the former does not outweigh the latter when other characters overwhelmingly support the affinities of a taxon. Many Morrison Formation sauropods were spatio-temporally and/or ecologically separated from one another. Combined with the biases that cloud our reading of the fossil record, we contend that the number of sauropod dinosaur species in the Morrison Formation is currently likely to be underestimated, not overestimated.
DOI: 10.6084/m9.figshare.14717623
title: Supp7. Xu et al. phylogenetic data matrix (TNT file) from Anatomy and systematics of the diplodocoid <i>Amphicoelias altus</i> supports high sauropod dinosaur diversity in the Upper Jurassic Morrison Formation of the USA

description: Sauropod dinosaurs were an abundant and diverse component of the Upper Jurassic Morrison Formation of the USA, with 24 currently recognized species. However, some authors consider this high diversity to have been ecologically unviable and the validity of some species has been questioned, with suggestions that they represent growth series (ontogimorphs) of other species. Under this scenario, high sauropod diversity in the Late Jurassic of North America is greatly overestimated. One putative ontogimorph is the enigmatic diplodocoid <i>Amphicoelias altus</i>, which has been suggested to be synonymous with <i>Diplodocus</i>. Given that <i>Amphicoelias</i> was named first, it has priority and thus <i>Diplodocus</i> would become its junior synonym. Here, we provide a detailed re-description of <i>A. altus</i> in which we restrict it to the holotype individual and support its validity, based on three autapomorphies. Constraint analyses demonstrate that its phylogenetic position within Diplodocoidea is labile, but it seems unlikely that <i>Amphicoelias</i> is synonymous with <i>Diplodocus</i>. As such, our re-evaluation also leads us to retain <i>Diplodocus</i> as a distinct genus. There is no evidence to support the view that any of the currently recognized Morrison sauropods are ontogimorphs. Available data indicate that sauropod anatomy did not dramatically alter once individuals approached maturity. Furthermore, subadult sauropod individuals are not prone to stemward slippage in phylogenetic analyses, casting doubt on the possibility that their taxonomic affinities are substantially misinterpreted. An anatomical feature can have both an ontogenetic and phylogenetic signature, but the former does not outweigh the latter when other characters overwhelmingly support the affinities of a taxon. Many Morrison Formation sauropods were spatio-temporally and/or ecologically separated from one another. Combined with the biases that cloud our reading of the fossil record, we contend that the number of sauropod dinosaur species in the Morrison Formation is currently likely to be underestimated, not overestimated.