cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/2dqg1-ha790
title: RalF-Ub V76

description: Lp02 pCyaA::RalF-Ub V76 free from U937
description: <strong>Tilt Series Date:</strong> 2020-07-31</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Stephen Carter</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 1h infection, 1-2 washes, fibronectin/vitronectin/no matrix. Legionella: 2.5 O.D, 3h after 200mM  IPTG induction, at O.D. 3</p>
<strong>Sample Preparation:</strong> 200mesh Gold quantifoil,  10nm gold, 37deg C, 80-90% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-07-31-57/rawdata/</p>RalFUbV76_194.mrc,  Tilt Series (Pixel Size 0.265 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-07-31-57/rawdata/RalFUbV76_194.mrc"
        > <i class="download icon"></i> Download </a></p>

        RalFUbV76_194_full.rec,  Reconstruction (Pixel Size 1.06 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2020-07-31-57/3dimage_113292/RalFUbV76_194_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.21979/n9/piigck
title: Replication Data for: Tunable Ferroelectricity in Ruddlesden-Popper Halide Perovskites

description: Ruddlesden-Popper (RP) halide perovskites are the new kids on the block for high-performance perovskite photovoltaics with excellent ambient stability. The layered nature of these perovskites offers an exciting possibility of harnessing their ferroelectric property for photovoltaics. Adjacent polar domains in a ferroelectric material allow the spatial separation of electrons and holes. Presently, the structure-function properties governing the ferroelectric behavior of RP perovskites are an open question. Herein, we realize tunable ferroelectricity in 2-phenylethylammonium (PEA) and methylammonium (MA) RP perovskite (PEA)2(MA)n̄-1Pbn̄I3n̄+1. Second harmonic generation confirms the non-centrosymmetric nature of these poly-crystalline thin films; while piezo force microscopy and polarization-electric field measurements validate the microscopic and macroscopic ferroelectric properties. Temperature dependent SHG and dielectric constant measurements uncover a phase transition temperature at around 170 °C in these films. Extensive Molecular Dynamics (MD) simulations support the experimental results and identified correlated reorientation of MA molecules and ion translations as the source of ferroelectricity. Current-voltage characteristics in the dark reveal the persistence of hysteresis in these devices, which has profound implications for light harvesting and light emitting applications. Importantly, our findings disclose a viable approach for engineering the ferroelectric properties of RP perovskites that may unlock new functionalities for perovskite optoelectronics.
DOI: 10.21979/n9/r6fnvh
title: All ACM-TWEB Bigrams

description: npy file containing list of all bigrams ordered from most frequent to least frequent for the ACM-TWEB corpus.
DOI: 10.21979/n9/wddlg0
title: Replication Data for: Molecular design of two-dimensional perovskite cations for efficient energy cascade in perovskite light-emitting diodes

description: Despite extensive reports on highly efficient perovskite light-emitting diodes, rules governing the design of suitable two-dimensional (2D) perovskite templating cation to facilitate formation of optimal emitter landscape for energy cascade remain largely elusive. With factors such as structure, size, functionalization, and charge capable of influencing the distribution of multidimensional perovskite phases, the importance of 2D templating cation design in determining film optoelectronic properties is indisputable. However, typical mono-functionalized 2D templating cations often result in larger lead halide octahedral spacing, which impedes effective charge transport. This has fueled investigation into the use of multiple cations for optimal domain distribution and improved charge transfer kinetics to the emitting species. In this study, we attempt to impart enhanced charge transfer characteristics to the resultant multidimensional perovskite by employing two bi-functionalized aromatic cations, namely, pyridinium ethyl ammonium and imidazolium ethyl ammonium, reminiscent of mono-functionalized phenyl ethyl ammonium, a widely used 2D perovskite templating cation. Although it is proposed that greater intermolecular bonding would enhance charge transfer rates, the simultaneous increase in lead halide octahedral distortion results in quenching of their corresponding 2D and multidimensional perovskite luminescence properties, correlated with increased defect density within the material. This manifests in the form of shorter PL decay lifetimes, lower PLQY, and device performance arising from inferior energy funneling. This study highlights the importance of designing 2D perovskite templating cations offering better transport and reduced octahedral distortion for the development of energy cascade-efficient, multidimensional perovskites.
DOI: 10.15468/dl.9zb8hh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Dalbergia ramosii Sunarno & H.Ohashi"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022833-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21979/n9/txsktm
title: Related Data for: Efficient Bandgap Widening in Co-evaporated MAPbI3 Perovskite

description: This datasets contains the raw data of the publication that is summarized in the embedded origin files inside power point file.
DOI: 10.21979/n9/yimf4g
title: Investigating working adults’ intentions to participate in microlearning using the decomposed theory of planned behaviour (DTPB)

description: Data set and R code script for the manuscript titled "Investigating working adults’ intentions to participate in microlearning using the decomposed theory of planned behaviour (DTPB)"
DOI: 10.15468/dl.7vrtzp
title: Occurrence Download

description: A dataset containing 134010 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rumex hydrolapathum"
 ]
}

 The dataset includes 134010 records from 514 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000019-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3vtyw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus ilex",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000033-250827131500795/datasets/export for details.
DOI: 10.15468/dl.26bmst
title: Occurrence Download

description: A dataset containing 719 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fistularia commersonii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 719 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000028-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.748d4s
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus ilex",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 47 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000034-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16942612
title: Time-Series Photometry of ZTF J1944+4557 Published in Guidry & Vanderbosch et al. (2025)

description: Here we have uploaded all our follow-up, high-speed, time-series photometry of ZTF J1944+4557, a white dwarf star showing periodically transited by disrupted planetary debris every 4.9704 hr. These light curves were published in Guidry & Vanderbosch et al. (2025) (accepted to The Astrophysical Journal, https://doi.org/10.3847/1538-4357/adfecb -- https://arxiv.org/abs/2508.18348). We share them here for the community to analyze further, especially seeing value in others attempting to identify distinguishable features in the constantly evolving transit morphologies.
DOI: 10.5281/zenodo.16942613
title: Time-Series Photometry of ZTF J1944+4557 Published in Guidry & Vanderbosch et al. (2025)

description: Here we have uploaded all our follow-up, high-speed, time-series photometry of ZTF J1944+4557, a white dwarf star showing periodically transited by disrupted planetary debris every 4.9704 hr. These light curves were published in Guidry & Vanderbosch et al. (2025) (accepted to The Astrophysical Journal, https://doi.org/10.3847/1538-4357/adfecb -- https://arxiv.org/abs/2508.18348). We share them here for the community to analyze further, especially seeing value in others attempting to identify distinguishable features in the constantly evolving transit morphologies.
DOI: 10.22002/7h1zx-t5e67
title: Myxococcus xanthus delta-pilY1

description: strain SA6852Grid box YWC212
description: <strong>Tilt Series Date:</strong> 2016-04-24</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 175.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-35/rawdata/</p>20160424_YWC212_30001.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-35/rawdata/20160424_YWC212_30001.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160424_YWC212_30001_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 11.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-04-24-35/3dimage_74823/20160424_YWC212_30001_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29999344
title: Additional file 12 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 12: Table S1. Primer information for embryo determination. Table S2. Primer information for sex-biased DEG validation. Table S3. Primer information for alternative splicing validation
DOI: 10.6084/m9.figshare.29999344.v1
title: Additional file 12 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 12: Table S1. Primer information for embryo determination. Table S2. Primer information for sex-biased DEG validation. Table S3. Primer information for alternative splicing validation
DOI: 10.6084/m9.figshare.29999347
title: Additional file 13 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 13: Table S4. Sex ratio of bovine IVF embryos and summary statistics of RNA-seq data
DOI: 10.6084/m9.figshare.29999347.v1
title: Additional file 13 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 13: Table S4. Sex ratio of bovine IVF embryos and summary statistics of RNA-seq data
DOI: 10.6084/m9.figshare.29999350
title: Additional file 14 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 14: Table S5. Differentially expressed genes and functional enrichment
DOI: 10.6084/m9.figshare.29999350.v1
title: Additional file 14 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 14: Table S5. Differentially expressed genes and functional enrichment
DOI: 10.6084/m9.figshare.29999353
title: Additional file 15 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 15: Table S6. Overlapped genes between sex-biased DEGs and AS genes and functional enrichment
DOI: 10.6084/m9.figshare.29999353.v1
title: Additional file 15 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 15: Table S6. Overlapped genes between sex-biased DEGs and AS genes and functional enrichment
DOI: 10.6084/m9.figshare.29999356
title: Additional file 16 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 16: Table S7. Sex-biased alternative splicing events
DOI: 10.6084/m9.figshare.29999356.v1
title: Additional file 16 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 16: Table S7. Sex-biased alternative splicing events
DOI: 10.6084/m9.figshare.29999359
title: Additional file 17 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 17: Table S8. Protein domains affected by sex-biased SE events and functional enrichment
DOI: 10.6084/m9.figshare.29999359.v1
title: Additional file 17 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 17: Table S8. Protein domains affected by sex-biased SE events and functional enrichment
DOI: 10.6084/m9.figshare.29999362
title: Additional file 18 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 18: Table S9. Sex-biased isoforms and functional enrichment
DOI: 10.6084/m9.figshare.29999362.v1
title: Additional file 18 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 18: Table S9. Sex-biased isoforms and functional enrichment
DOI: 10.22002/34b10-bax27
title: T5_504Cys_Aumalemaide_5nm

description: This is a sample in which N terminus residue 504 has been mutated to Cys residue. Mini cells have been isolated by high speed centrifugation and cells are Au malemaide labelled. No fiducials added.
description: <strong>Tilt Series Date:</strong> 2017-02-17</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> EC93 stick, UPEC536</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 125.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> Zach Ruhe and Chris Hayes</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Freezing in vitrobot. Humidifier was not working. I wouldn't really trust the conditions.See pages 104-105</p>
<strong>Sample Preparation:</strong> Sample prepared by Taylor Steven</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-56/rawdata/</p>sq50015.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-56/rawdata/sq50015.mrc"
        > <i class="download icon"></i> Download </a></p>

        sq50015.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-56/3dimage_82548/sq50015.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29999365
title: Additional file 19 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 19: Table S10. Overlapping genes among sex-biased DEGs, differential alternative splicing genes, and differential isoform-related genes
DOI: 10.6084/m9.figshare.29999365.v1
title: Additional file 19 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 19: Table S10. Overlapping genes among sex-biased DEGs, differential alternative splicing genes, and differential isoform-related genes
DOI: 10.6084/m9.figshare.29999368
title: Additional file 20 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 20: Table S11. Differential exon usage between sexes
DOI: 10.6084/m9.figshare.29999368.v1
title: Additional file 20 of Sex-biased transcriptome in in vitro produced bovine early embryos

description: Supplemental Material 20: Table S11. Differential exon usage between sexes
DOI: 10.22002/939ea-ac384
title: Xac WT pBRaφ pBRR MCS5 GFP

description: Xanthomonas citri   pv citri 306
description: <strong>Tilt Series Date:</strong> 2017-12-15</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chuck Farah lab made the strain, data collected by Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 6 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-12-15-42/rawdata/</p>XanGFP15122017a0038.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        XanGFP15122017a0038_part61_2.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/j64ks-m4a95
title: Staphylococcus aureus_WT

description: T7SS
description: <strong>Tilt Series Date:</strong> 2017-06-28</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 280.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Tracy Palmer, University of Dundee. Data collected and processed by Ki Woo and Debnath Ghosal.</p>
<strong>Sample Preparation:</strong> Media: TSA 500g (Oxoid TSA and TSB from Thermo Fisher. 10525943), TBS 500g (10137562)Dilute an overnight culture 1/100Incubate it for 4 hr (--> OD 2)Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-06-28-12/3dimage_85380/</p>Sau_WT0011_part67_5.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Sau_WT0011.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.vyz233
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Tamarix arceuthoides"
 ]
}

 The dataset includes 52 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002477-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.