cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20787121.v1
title: Additional file 2 of A gene expression profile for the lower osteogenic potent of bone-derived MSCs from osteoporosis with T2DM and the potential mechanism

description: Additional file 2: Table S2. GO and KEGG analyses of all DEGs.
DOI: 10.6084/m9.figshare.20787118
title: Additional file 1 of A gene expression profile for the lower osteogenic potent of bone-derived MSCs from osteoporosis with T2DM and the potential mechanism

description: Additional file 1: Table S1. The expression alteration of all DEGs in T2DM-BMSC.
DOI: 10.6084/m9.figshare.20787121
title: Additional file 2 of A gene expression profile for the lower osteogenic potent of bone-derived MSCs from osteoporosis with T2DM and the potential mechanism

description: Additional file 2: Table S2. GO and KEGG analyses of all DEGs.
DOI: 10.6084/m9.figshare.11351987
title: DataFile1.csv

description: Detailed coefficients of phase functions
DOI: 10.6084/m9.figshare.15022071
title: Approximately 200k and 3 millions sample points on sphere

description: Root link of the proposed FWD-GCA-based metric: 10.6084/m9.figshare.15020151.<br>Approximately 200k sample points generated by HealPix algorithm on sphere. It is used to evaluate traditional differential-based (10.6084/m9.figshare.15022074), GCA and the proposed FWD-GCA (10.6084/m9.figshare.15022092) metrics.<br>Move 'heal200k.csv' to a folder named 'points', and use codes in 10.6084/m9.figshare.15022095 to calculate above metrcis.
DOI: 10.6084/m9.figshare.16594958
title: Circ-UQCRC2 aggravates lipopolysaccharide-induced injury in human bronchial epithelioid cells via targeting miR-495-3p/MYD88-mediated inflammatory response and oxidative stress

description: Infantile pneumonia is a common inflammatory disease with the infections of various pathogens in lower respiratory tracts. Here, the role and working mechanism of circular RNA (circRNA) ubiquinol-cytochrome c reductase core protein 2 (circ-UQCRC2; hsa_circ_0038467) in infantile pneumonia were investigated. Cell viability, apoptosis, and inflammatory response were assessed by 3-(4,5-dimethyl-thiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, flow cytometry, and enzyme-linked immunosorbent assay (ELISA). Cell oxidative stress was analyzed by measuring the production of malondialdehyde (MDA) and superoxide dismutase (SOD). Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and Western blot assay were performed to determine the expression of RNAs and proteins. Dual-luciferase reporter assay and RNA immunoprecipitation (RIP) assay were performed to confirm the interaction between microRNA-495-3p (miR-495-3p) and circ-UQCRC2 or myeloid differentiation primary response protein 88 (MYD88). Lipopolysaccharide (LPS) treatment suppressed the viability while induced the apoptosis, inflammation, and oxidative stress of 16HBE cells in a dose-dependent manner. LPS exposure dose-dependently up-regulated the expression of circ-UQCRC2 in 16HBE cells. Circ-UQCRC2 absence attenuated LPS-induced injury in 16HBE cells. miR-495-3p was a target of circ-UQCRC2, and circ-UQCRC2 silencing-mediated protective effects in LPS-induced 16HBE cells were partly reversed by anti-miR-495-3p. MYD88 was a target of miR-495-3p, and MYD88 overexpression partly counteracted miR-495-3p accumulation-mediated influences in 16HBE cells upon LPS exposure. Circ-UQCRC2 interference decreased the protein expression of MYD88 partly by up-regulating miR-495-3p in LPS-induced 16HBE cells. In conclusion, circ-UQCRC2 contributed to LPS-induced injury of 16HBE cells by targeting miR-495-3p/MYD88 signalling-mediated inflammatory response and oxidative stress.
DOI: 10.6084/m9.figshare.20787058.v1
title: Additional file 2 of Metagenomes of rectal swabs in larger, advanced stage cervical cancers have enhanced mucus degrading functionalities and distinct taxonomic structure

description: Supplementary file 2: Table S1. Software tools/packages used in the shotgun metagenome sequencing data analysis workflow. Table S2. Clinicopathological characteristics of the study cohort. Table S3. Functional richness of metagenomes identified in each patient of the study cohort. Table S4. Differentially abundant taxa identified between LT- and ST-groups by linear discriminant analysis (LDA) effect size (LEfSe) analysis.
DOI: 10.6084/m9.figshare.19738552
title: Additional file 1 of Association of the tissue infiltrated and peripheral blood immune cell subsets with response to radiotherapy for rectal cancer

description: Additional file 1. Statistically significant cell types from cell type deconvolution based on GSE3493.
DOI: 10.6084/m9.figshare.19738555
title: Additional file 2 of Association of the tissue infiltrated and peripheral blood immune cell subsets with response to radiotherapy for rectal cancer

description: Additional file 2. Statistically significant cell types validation with pooled dataset of GSE3493 and GSE35452.
DOI: 10.6084/m9.figshare.15022181
title: Viewing-angle-switching film based on polymer dispersed liquid crystals for smart anti-peeping liquid crystal display

description: In this paper, the viewing-angle-switching (VAS) films based on polymer dispersed liquid crystals (PDLCs) were fabricated and the optical properties of the VAS films were studied. The VAS films based on PDLC films can exhibit electrically switchable viewing-angle properties, and the films showed a narrow viewing angle under no electric field and presented a wide viewing angle under electric field (24 V). Furthermore, the smart anti-peeping liquid crystal display (LCD) containing the VAS film based on PDLC film also displayed the electrically switchable viewing-angle performance and the corresponding mechanism was discussed. The results demonstrated both the anti-peeping effect and electrically switchable view-angle effect of the as-fabricated VAS film, promising potential applications in intelligent optical films and novel information displays.
DOI: 10.6084/m9.figshare.16590993.v1
title: Additional file 2 of ALKBH5-HOXA10 loop-mediated JAK2 m6A demethylation and cisplatin resistance in epithelial ovarian cancer

description: Additional file 2 The differentially enriched m6A-peaks of MeRIP-seq (|log2 fold change (FC)| ≥1, p&lt;0.05).
DOI: 10.15468/dl.3jzpre
title: Occurrence Download

description: A dataset containing 1035621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Occurrence evidence, Specimen, Material citation)",
 "Geometry POLYGON((-180 -23.5,180 -23.5,180 23.5,-180 23.5,-180 -23.5))",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Squamata, Crocodylia, Testudines)"
 ]
}

 The dataset includes 1035621 records from 690 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092505-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ss4rvz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Armeria denticulata (Bertol.) DC.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092585-240321170329656/datasets/export for details.
DOI: 10.15468/dl.sd7nda
title: Occurrence Download

description: A dataset containing 12345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Ramphastos tucanus Linnaeus, 1758"
 ]
}

 The dataset includes 12345 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092584-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24559852
title: Czech Butterfly Barcoding

description: Czech Butterfly Barcoding DatasetsThis dataset consists of separate nexus files of COI sequences for each butterfly species covered in the Czech Republic Butterfly barcoding scheme.Nexus files include newly generated sequences from the Czech Republic, and database data from BOLD (https://v3.boldsystems.org/) (Ratnasingham & Hebert 2007) (downloaded on 12 October 2022) for each species across its range, which were georeferenced and sequenced from the 5' end. We manually aligned samples with different length than 658 bp.We used an R script CZbar.R for data handling. It is a script for quick extracting of already downloaded data from BOLD. The data should be in a table containing all data and also sequences, saved as combined TSV file. Save the script, open under R, install the dependencies and run following the instructions directly in the script.We further used the script BAPS analyses (via rhierbaps R package, Tonkin-Hill et al. 2018), and for generating Nexus inputs for POPART (Leigh & Bryant 2015; available from https://popart.maths.otago.ac.nz/). Both results of rhierbaps and POPART were checked visually and the dataset was cleaned to omit database samples which were either shorter than 500 bp, or potentially misidentified (dissimilarity of sequences represented by long branches in haplotype networks was evaluated using the BLAST algorithm, Altschul et al. 1990, in the NCBI database). After such cleaning, the final dataset (samplelist_metadata2.xlxs) and final nexus files, presented here, were produced.<br>Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol., 215, 403–410.Leigh, J.W. & Bryant, D. (2015). popart: full-feature software for haplotype network construction. Methods Ecol. Evol., 6, 1110–1116.Ratnasingham, S. & Hebert, P.D.N. (2007). bold: The Barcode of Life Data System (http://www.barcodinglife.org). Mol Ecol. Notes, 7, 355–364.Tonkin-Hill, G., Lees, J.A., Bentley, S.D., Frost, S.D.W. & Corander, J. (2018). RhierBAPS: An R implementation of the population clustering algorithm hierBAPS. Wellcome Open Res., 3, 93.
DOI: 10.6084/m9.figshare.24559852.v2
title: Czech Butterfly Barcoding

description: Czech Butterfly Barcoding DatasetsThis dataset consists of separate nexus files of COI sequences for each butterfly species covered in the Czech Republic Butterfly barcoding scheme.Nexus files include newly generated sequences from the Czech Republic, and database data from BOLD (Ratnasingham & Hebert 2007) (downloaded on 12 October 2022) for each species across its range, which were georeferenced and sequenced from the 5' end. We manually aligned samples with different length than 658 bp. We used an R script CZbar.R available at https://github.com/zdfric/CZbar for data handling, BAPS analyses (via rhierbaps R package, Tonkin-Hill et al. 2018), and for generating Nexus inputs for POPART (Leigh & Bryant 2015; available from https://popart.maths.otago.ac.nz/). Both results of rhierbaps and POPART were checked visually and the dataset was cleaned as to omit database samples which were either shorter than 500 bp, or potentially misidentified (dissimilarity of sequences represented by long branches in haplotype networks was evaluated using the BLAST algorithm, Altschul et al. 1990, in the NCBI database). After such cleaning, the final dataset (samplelist_metadata.xlxs) and final nexus files, presented here, were produced.<br>Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol., 215, 403–410.Leigh, J.W. & Bryant, D. (2015). popart: full-feature software for haplotype network construction. Methods Ecol. Evol., 6, 1110–1116.Ratnasingham, S. & Hebert, P.D.N. (2007). bold: The Barcode of Life Data System (http://www.barcodinglife.org). Mol Ecol. Notes, 7, 355–364.Tonkin-Hill, G., Lees, J.A., Bentley, S.D., Frost, S.D.W. & Corander, J. (2018). RhierBAPS: An R implementation of the population clustering algorithm hierBAPS. Wellcome Open Res., 3, 93.
DOI: 10.15468/dl.kb8hw5
title: Occurrence Download

description: A dataset containing 4343216 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco tinnunculus Linnaeus, 1758"
 ]
}

 The dataset includes 4343216 records from 5880 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092551-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q64k74
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chloranthus sessilifolius K.F.Wu)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 178 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108021-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dvnwq
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chloranthus spicatus (Thunb.) Makino)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 158 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108024-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qancg
title: Occurrence Download

description: A dataset containing 19480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caprimulgus ruficollis Temminck, 1820",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 19480 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108023-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6c29w7
title: Occurrence Download

description: A dataset containing 32626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Cunoniaceae"
 ]
}

 The dataset includes 32626 records from 424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108025-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w786y7
title: Occurrence Download

description: A dataset containing 563551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cairina moschata (Linnaeus, 1758)"
 ]
}

 The dataset includes 563551 records from 333 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108014-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wd2pnn
title: Occurrence Download

description: A dataset containing 8777 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chloris gayana Kunth)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8777 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108026-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24224263
title: Data for paper: Bird phylogenetic diversity increases with temperature worldwide

description: Data supporting findings in the paper: "Bird phylogenetic diversity increases with temperature worldwide". The folder contains 5 files, of ca. 500MB size in total. Read the "ReadMe" file for more details.
DOI: 10.5281/zenodo.13514192
title: Resting-state functional connectivity matrices of various unconscious, psychedelic, and neuropsychiatric states.

description: Functional connectivity matrices of various unconscious, psychedelic, and neuropsychiatric states.

Conditions include:

N2 Sleep

Subaneshesthetic ketamine

Deep sedation with propofol

Surgical-level propofol anesthesia

LSD

N2O 

ADHD

Bipolar disorder

Schizophrenia

Functional connectivity matrices with and without global signal regression are both included.
DOI: 10.5281/zenodo.13514193
title: Resting-state functional connectivity matrices of various unconscious, psychedelic, and neuropsychiatric states.

description: Functional connectivity matrices of various unconscious, psychedelic, and neuropsychiatric states.

Conditions include:

N2 Sleep

Subaneshesthetic ketamine

Deep sedation with propofol

Surgical-level propofol anesthesia

LSD

N2O 

ADHD

Bipolar disorder

Schizophrenia

Functional connectivity matrices with and without global signal regression are both included.
DOI: 10.15468/dl.qpag7a
title: Occurrence Download

description: A dataset containing 9183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chloris virgata Sw.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9183 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108027-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmbnrt
title: Occurrence Download

description: A dataset containing 2650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysanthemum indicum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2650 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108028-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3382nz
title: Occurrence Download

description: A dataset containing 2084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysanthemum lavandulifolium (Fisch. ex Trautv.) Makino)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2084 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108030-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvjsbx
title: Occurrence Download

description: A dataset containing 67356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Issue is one of (Zero coordinate, Coordinate out of range, Coordinate invalid, Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate accuracy invalid, Coordinate precision invalid, Coordinate uncertainty meters invalid, Coordinate precision/uncertainty mismatch, Footprint SRS invalid, Footprint WKT mismatch, Footprint WKT invalid, Country coordinate mismatch, Country mismatch, Country invalid, Country derived from coordinates, Continent coordinate mismatch, Continent country mismatch, Continent invalid, Continent derived from country, Continent derived from coordinates, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Recorded date mismatch, Recorded date invalid, Recorded date unlikely, Taxon match fuzzy, Taxon match higher rank, Taxon match aggregate, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, The scientific name differs on the record from that found in the checklist, Taxon match none, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Depth not metric, Depth unlikely, Depth min max swapped, Depth non numeric, Elevation unlikely, Elevation min max swapped, Elevation not metric, Elevation non numeric, Modified date invalid, Modified date unlikely, Identified date unlikely, Identified date invalid, Basis of record invalid, Type status invalid, Multimedia date invalid, Multimedia URI invalid, References URI invalid, Error during interpretation, Individual count invalid, Individual count conflicts with occurrence status, Occurrence status unparsable, Occurrence status inferred from individual count, ccurrence status inferred from basis of record, Georeferenced date unlikely, Georeferenced date invalid, Ambiguous institution, Ambiguous collection, Institution match none, Collection match none, Institution match fuzzy, Collection match fuzzy, Institution collection mismatch, Possibly on loan, Different owner institution)",
 "OccurrenceStatus is Present",
 "TaxonKey is Combretaceae"
 ]
}

 The dataset includes 67356 records from 501 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0108029-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.