cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13357310.v1
title: Additional file 5 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 5. Gene Set Enrichment Analysis to highlight the network of transcription factor target triggered by BPS treatment.
DOI: 10.6084/m9.figshare.13357316.v1
title: Additional file 7 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 7. Table reporting genomic distribution of differentially methylated CpGs and DMRs.
DOI: 10.6084/m9.figshare.13357310
title: Additional file 5 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 5. Gene Set Enrichment Analysis to highlight the network of transcription factor target triggered by BPS treatment.
DOI: 10.6084/m9.figshare.13357316
title: Additional file 7 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 7. Table reporting genomic distribution of differentially methylated CpGs and DMRs.
DOI: 10.6084/m9.figshare.13357313
title: Additional file 6 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 6. List of the connections between significant DNA methylation and gene expression deregulations induced by BPS treatment.
DOI: 10.6084/m9.figshare.13357319.v1
title: Additional file 8 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 8. List of genes of the heatmap in Fig. 1, in order of appearance from top to bottom.
DOI: 10.6084/m9.figshare.13357307.v1
title: Additional file 4 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 4. Gene Set Enrichment Analysis to highlight the alterations of gene functions triggered by BPS treatment.
DOI: 10.6084/m9.figshare.13357313.v1
title: Additional file 6 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 6. List of the connections between significant DNA methylation and gene expression deregulations induced by BPS treatment.
DOI: 10.6084/m9.figshare.13357319
title: Additional file 8 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 8. List of genes of the heatmap in Fig. 1, in order of appearance from top to bottom.
DOI: 10.6084/m9.figshare.13357307
title: Additional file 4 of Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice

description: Additional file 4. Gene Set Enrichment Analysis to highlight the alterations of gene functions triggered by BPS treatment.
DOI: 10.6073/pasta/a5806c8b7a10e5f90e6c8f6e29838588
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP T-TAYL met station. Average air temperature, relative humidity, wind speed and wind direction are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.13357352
title: Additional file 2 of ideal: an R/Bioconductor package for interactive differential expression analysis

description: Additional file 2: Complete use case for the ideal package, based on the macrophage immune stimulation dataset (Interferon Gamma treatment vs naive cells).
DOI: 10.6084/m9.figshare.13357352.v1
title: Additional file 2 of ideal: an R/Bioconductor package for interactive differential expression analysis

description: Additional file 2: Complete use case for the ideal package, based on the macrophage immune stimulation dataset (Interferon Gamma treatment vs naive cells).
DOI: 10.6084/m9.figshare.13357349
title: Additional file 1 of ideal: an R/Bioconductor package for interactive differential expression analysis

description: Additional file 1: Comparison of software for analyzing interactively RNA-Seq data, including link to the related publications (if available) and to the source code repositories. Evaluation criteria are included in the dedicated sheet. The information contained in this table are also available online at https://federicomarini.github.io/ideal_supplement , displaying the content of the ideal supplement Google Sheet, accessible at https://docs.google.com/spreadsheets/d/167XV0w18P0FSld1dt6owN4C2Esxl5FU2QTo4D-wclz0/edit?usp=sharing .
DOI: 10.6084/m9.figshare.13357349.v1
title: Additional file 1 of ideal: an R/Bioconductor package for interactive differential expression analysis

description: Additional file 1: Comparison of software for analyzing interactively RNA-Seq data, including link to the related publications (if available) and to the source code repositories. Evaluation criteria are included in the dedicated sheet. The information contained in this table are also available online at https://federicomarini.github.io/ideal_supplement , displaying the content of the ideal supplement Google Sheet, accessible at https://docs.google.com/spreadsheets/d/167XV0w18P0FSld1dt6owN4C2Esxl5FU2QTo4D-wclz0/edit?usp=sharing .
DOI: 10.6073/pasta/3b171d7507966c18671171e53b9b563d
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP T-TAYL met station. Average/maximum/minimum air temperature; average/maximum relative humidity and wind speed and average wind direction. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.12775021
title: Additional file 1 of Patient-individual cancer cell lines and tissue analysis delivers no evidence of sequences from DNA viruses in colorectal cancer cells

description: Additional file 1.
DOI: 10.6084/m9.figshare.12775021.v1
title: Additional file 1 of Patient-individual cancer cell lines and tissue analysis delivers no evidence of sequences from DNA viruses in colorectal cancer cells

description: Additional file 1.
DOI: 10.6084/m9.figshare.13357398.v1
title: Additional file 1 of Ethiopian progress towards achieving the global nutrition targets of 2025: analysis of sub-national trends and progress inequalities

description: Additional file 1. This is an excel table showing the data used in this study and its analysis.
DOI: 10.6084/m9.figshare.13357398
title: Additional file 1 of Ethiopian progress towards achieving the global nutrition targets of 2025: analysis of sub-national trends and progress inequalities

description: Additional file 1. This is an excel table showing the data used in this study and its analysis.
DOI: 10.6084/m9.figshare.13357401
title: Additional file 1 of Taming the pandemic? The importance of homemade plant-based foods and beverages as community responses to COVID-19

description: Additional file 1. Details on the methods and questions used in each case study, and primary and secondary sources of information.
DOI: 10.6084/m9.figshare.13357407.v1
title: Additional file 3 of Taming the pandemic? The importance of homemade plant-based foods and beverages as community responses to COVID-19

description: Additional file 3. Overview of plant taxa reported in all case studies by country, region or city.
DOI: 10.6084/m9.figshare.13357401.v1
title: Additional file 1 of Taming the pandemic? The importance of homemade plant-based foods and beverages as community responses to COVID-19

description: Additional file 1. Details on the methods and questions used in each case study, and primary and secondary sources of information.
DOI: 10.6084/m9.figshare.13357407
title: Additional file 3 of Taming the pandemic? The importance of homemade plant-based foods and beverages as community responses to COVID-19

description: Additional file 3. Overview of plant taxa reported in all case studies by country, region or city.
DOI: 10.6084/m9.figshare.13357446
title: Additional file 1 of Can harmonisation of outcomes bridge the translation gap for pre-clinical research? A systematic review of outcomes measured in mouse models of type 2 diabetes

description: Additional file 1. Included Studies
DOI: 10.6084/m9.figshare.13357446.v1
title: Additional file 1 of Can harmonisation of outcomes bridge the translation gap for pre-clinical research? A systematic review of outcomes measured in mouse models of type 2 diabetes

description: Additional file 1. Included Studies
DOI: 10.6073/pasta/23a37c19f32f8fa711e1c11b13c67464
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.13357502.v1
title: Additional file 2 of Transcriptome profiling revealed early vascular smooth muscle cell gene activation following focal ischemic stroke in female rats – comparisons with males

description: Additional file 2.
DOI: 10.6084/m9.figshare.13357502
title: Additional file 2 of Transcriptome profiling revealed early vascular smooth muscle cell gene activation following focal ischemic stroke in female rats – comparisons with males

description: Additional file 2.
DOI: 10.6084/m9.figshare.13357511
title: Additional file 3 of High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status

description: Additional file 3. Supplemental Table S1: The full list of journals by year, including estimated false discovery rate, number of abstracts received, and number of p-values identified in abstracts.
DOI: 10.6084/m9.figshare.13357505
title: Additional file 1 of High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status

description: Additional file 1. Supplemental Table S6: a full list of all considered journals organized by subject, open access group membership status, and whether the journal was removed.
DOI: 10.6084/m9.figshare.13357505.v1
title: Additional file 1 of High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status

description: Additional file 1. Supplemental Table S6: a full list of all considered journals organized by subject, open access group membership status, and whether the journal was removed.
DOI: 10.6084/m9.figshare.13357514
title: Additional file 1 of A cross-sectional survey of the readiness of consumers to adopt an environmentally sustainable diet

description: Additional file 1.
DOI: 10.6084/m9.figshare.13357511.v1
title: Additional file 3 of High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status

description: Additional file 3. Supplemental Table S1: The full list of journals by year, including estimated false discovery rate, number of abstracts received, and number of p-values identified in abstracts.
DOI: 10.6073/pasta/d56f9223fbf3232b06572e1e87f67419
title: Jornada Basin LTER: Wireless meteorological station at NPP T-TAYL site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-TAYL met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-TAYL site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.13357514.v1
title: Additional file 1 of A cross-sectional survey of the readiness of consumers to adopt an environmentally sustainable diet

description: Additional file 1.
DOI: 10.6084/m9.figshare.13357605
title: Additional file 5 of The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

description: Additional file 5: Table S5. Distribution of antimicrobial resistance genes (ARG) on organic and conventional farms at 100% gene content.
DOI: 10.6084/m9.figshare.13357596.v1
title: Additional file 2 of The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

description: Additional file 2: Table S2. Samples and sequencing information for organic and conventional farms. Ref: reference; Lact: lactating cow; NonLact: non-lactating cow; Org: organic; Conv: conventional.
DOI: 10.6084/m9.figshare.13357602
title: Additional file 4 of The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

description: Additional file 4: Table S4. Distribution of antimicrobial resistance genes (ARG) on organic and conventional farms at 80% gene content.
DOI: 10.6084/m9.figshare.13357596
title: Additional file 2 of The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

description: Additional file 2: Table S2. Samples and sequencing information for organic and conventional farms. Ref: reference; Lact: lactating cow; NonLact: non-lactating cow; Org: organic; Conv: conventional.
DOI: 10.6084/m9.figshare.13357602.v1
title: Additional file 4 of The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

description: Additional file 4: Table S4. Distribution of antimicrobial resistance genes (ARG) on organic and conventional farms at 80% gene content.
DOI: 10.6084/m9.figshare.13357605.v1
title: Additional file 5 of The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

description: Additional file 5: Table S5. Distribution of antimicrobial resistance genes (ARG) on organic and conventional farms at 100% gene content.
DOI: 10.6084/m9.figshare.13357643.v1
title: Additional file 2 of The novel E-subgroup pentatricopeptide repeat protein DEK55 is responsible for RNA editing at multiple sites and for the splicing of nad1 and nad4 in maize

description: Additional file 2: Table S1. Number of reads at each editing site for each library. Table S2. Editing percentage at each editing site of each library. Table S3. The editing percentage of 24 RNA editing sites decreased in the dek55 mutant kernels. Table S4. The editing percentage of seven RNA editing sites increased in the dek55 mutant kernels.
DOI: 10.6084/m9.figshare.13357643
title: Additional file 2 of The novel E-subgroup pentatricopeptide repeat protein DEK55 is responsible for RNA editing at multiple sites and for the splicing of nad1 and nad4 in maize

description: Additional file 2: Table S1. Number of reads at each editing site for each library. Table S2. Editing percentage at each editing site of each library. Table S3. The editing percentage of 24 RNA editing sites decreased in the dek55 mutant kernels. Table S4. The editing percentage of seven RNA editing sites increased in the dek55 mutant kernels.
DOI: 10.6084/m9.figshare.13357706
title: Additional file 6 of Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack

description: Additional file 6: Table S2: Mean concentration of compounds of each plant chemotype found in hexane extractions at sampling days 4 and 7. Table S3: Mean VOC emission rates of each plant chemotype at sampling days 1–4 and 4–7. Table S4: Mean VOC emission rates of representative masses (m/z) measured using PTR-ToF-MS of different each plant chemotype at sampling days 1–4 and 4–7.
DOI: 10.6084/m9.figshare.13357706.v1
title: Additional file 6 of Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack

description: Additional file 6: Table S2: Mean concentration of compounds of each plant chemotype found in hexane extractions at sampling days 4 and 7. Table S3: Mean VOC emission rates of each plant chemotype at sampling days 1–4 and 4–7. Table S4: Mean VOC emission rates of representative masses (m/z) measured using PTR-ToF-MS of different each plant chemotype at sampling days 1–4 and 4–7.
DOI: 10.6084/m9.figshare.13357712.v1
title: Additional file 8 of Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack

description: Additional file 8: Table S6: List of differentially expressed genes associated with defence responses.
DOI: 10.6084/m9.figshare.13357709.v1
title: Additional file 7 of Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack

description: Additional file 7: Table S5: List of differentially expressed genes.
DOI: 10.6084/m9.figshare.13357712
title: Additional file 8 of Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack

description: Additional file 8: Table S6: List of differentially expressed genes associated with defence responses.
DOI: 10.6084/m9.figshare.13357709
title: Additional file 7 of Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack

description: Additional file 7: Table S5: List of differentially expressed genes.
DOI: 10.6084/m9.figshare.13357764.v1
title: Additional file 2 of A Klebsiella pneumoniae ST307 outbreak clone from Germany demonstrates features of extensive drug resistance, hypermucoviscosity, and enhanced iron acquisition

description: Additional file 2: Table S1. Overview of strains investigated in this study. Table S2. Overview of publicly available Klebsiella pneumoniae ST307 genomes obtained from online sources. Table S3. Overview of accumulated variants in transferred plasmids. Table S4. Coverage of isolate replicons.
DOI: 10.6084/m9.figshare.13357764
title: Additional file 2 of A Klebsiella pneumoniae ST307 outbreak clone from Germany demonstrates features of extensive drug resistance, hypermucoviscosity, and enhanced iron acquisition

description: Additional file 2: Table S1. Overview of strains investigated in this study. Table S2. Overview of publicly available Klebsiella pneumoniae ST307 genomes obtained from online sources. Table S3. Overview of accumulated variants in transferred plasmids. Table S4. Coverage of isolate replicons.
DOI: 10.6084/m9.figshare.13357830
title: Additional file 2 of Asymptomatic recrudescence after artemether–lumefantrine treatment for uncomplicated falciparum malaria: a systematic review and meta-analysis

description: Additional file 2. Details of the studies included in the systematic review.
DOI: 10.6084/m9.figshare.13357830.v1
title: Additional file 2 of Asymptomatic recrudescence after artemether–lumefantrine treatment for uncomplicated falciparum malaria: a systematic review and meta-analysis

description: Additional file 2. Details of the studies included in the systematic review.
DOI: 10.6084/m9.figshare.13357883.v1
title: Additional file 4 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 4 Chlorfenapyr assay test data and graphs.
DOI: 10.6084/m9.figshare.13357874
title: Additional file 1 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 1 WHO susceptibility tests and CDC bottle assays testing conditions (Temperature and humidity) of the different sites surveyed.
DOI: 10.6084/m9.figshare.13357874.v1
title: Additional file 1 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 1 WHO susceptibility tests and CDC bottle assays testing conditions (Temperature and humidity) of the different sites surveyed.
DOI: 10.6084/m9.figshare.13357877.v1
title: Additional file 2 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 2 Insecticide susceptibility test and resistance intensity data and graphs.
DOI: 10.6084/m9.figshare.13357880.v1
title: Additional file 3 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 3 Synergist assays using pyrethroid insecticides and piperonyl butoxide data.
DOI: 10.6084/m9.figshare.13357880
title: Additional file 3 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 3 Synergist assays using pyrethroid insecticides and piperonyl butoxide data.
DOI: 10.6084/m9.figshare.13357877
title: Additional file 2 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 2 Insecticide susceptibility test and resistance intensity data and graphs.
DOI: 10.6084/m9.figshare.13357883
title: Additional file 4 of Susceptibility of Anopheles gambiae from Côte d’Ivoire to insecticides used on insecticide-treated nets: evaluating the additional entomological impact of piperonyl butoxide and chlorfenapyr

description: Additional file 4 Chlorfenapyr assay test data and graphs.
DOI: 10.6084/m9.figshare.13357911
title: Additional file 3 of Distribution, treatment outcome and genetic diversity of Leishmania species in military personnel from Colombia with cutaneous leishmaniasis

description: Additional file 3. Demographic, clinical and epidemiological data of patients