cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kk7tyb
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Beryx decadactylus Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031541-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5yfeu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Araeosoma migratum Anderson, 2013",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031542-241126133413365/datasets/export for details.
DOI: 10.15468/dl.k2rpdw
title: Occurrence Download

description: A dataset containing 193163 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Swiss National Databank of Mayflies, Stoneflies and Caddiesflies"
 ]
}

 The dataset includes 193163 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031537-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7488/e04cf9ef-e67c-46ee-91e9-725c393d79e9
title: 'Harnessing the little white cells': tracing practices of immunity in cancer, 2020 – 2024.

description: This dataset is held in the Edinburgh DataVault, directly accessible only to authorised University of Edinburgh staff. External users may request access to a copy of the data by contacting the Principal Investigator, Contact Person or Data Manager named on this page. Requests for access will not necessarily be granted. University of Edinburgh users who wish to have direct access should consult the information about retrieving data from the DataVault at: https://www.ed.ac.uk/is/research-support/datavault.
description: The project researched how novel immunotherapy treatments in cancer are shifting how cancer is approached, managed and experienced. Immunotherapy treatments are used in clinical practice and are also currently being tested as part of experimental clinical trials to treat patients with some forms of cancer. These treatments utilise the patient's own body to treat cancer and the scientific and clinical hope attached to these novel therapies is that they have the potential to extend survival time for patients. There are, however, clinical concerns regarding long-term treatment side-effects and toxicities, predicting response and prognosis, and management of patients' hopes and expectations. 

The collection that is stored on Datashare (DOI: doi.org/10.7488/ds/7786) consists of qualitative semi-structured interviews with patients, healthcare practitioners and scientists in a cancer centre in the UK to answer three research questions:

(1) How are developments in immunology shifting conceptualisations of what cancer is and how it is treated?
(2) How are patients' experiences and subjectivities configured by immunological developments in cancer treatment?
(3) How is immunity in cancer constituted through the material practices of scientists, clinicians and patients within the context of personalised cancer medicine?

It is an interdisciplinary project with science and technology studies, medical sociology and anthropology. This is a Research Fellowship in Humanities and Social Science awarded to Julia Swallow (PI Edinburgh then Sheffield). 

The deposit in this vault is one transcript of a patient interview that cannot be shared. This is because the patient is easily identifiable via online searches as their experience with cancer has been made publicly available. The transcript is being stored for compliance purposes only.
DOI: 10.15468/dl.nd22kn
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus bruneus Bloch, 1793",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 51 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031543-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10423702
title: Data from: Piecing the barcoding puzzle of Palearctic water frogs (Pelophylax) sheds light on amphibian biogeography and global invasions

description: The data includes:



sequence alignements (fasta format, .fas) of the haplotypes retrieved for each mitochondrial and nuclear gene

full metadata (excel sheets, .xlsx) including original GenBank accession numbers, original taxonomic identifications, sample names, sources, locality information, haplotype labels and haplogroup assignement for the mitochondrial and nuclear sequences

concatenated supermatrix sequence alignments (nexus format, .nex) used in the mitochondrial and nuclear phylogenetic reconstructions, including partition information

full metadata (excel sheets, .xlsx) including original GenBank accession numbers, sample names and haplogroup assignement for the concatenated supermatrix used in the mitochondrial and nuclear phylogenetic reconstructions
DOI: 10.5281/zenodo.10423701
title: Data from: Piecing the barcoding puzzle of Palearctic water frogs (Pelophylax) sheds light on amphibian biogeography and global invasions

description: The data includes:



sequence alignements (fasta format, .fas) of the haplotypes retrieved for each mitochondrial and nuclear gene

full metadata (excel sheets, .xlsx) including original GenBank accession numbers, original taxonomic identifications, sample names, sources, locality information, haplotype labels and haplogroup assignement for the mitochondrial and nuclear sequences

concatenated supermatrix sequence alignments (nexus format, .nex) used in the mitochondrial and nuclear phylogenetic reconstructions, including partition information

full metadata (excel sheets, .xlsx) including original GenBank accession numbers, sample names and haplogroup assignement for the concatenated supermatrix used in the mitochondrial and nuclear phylogenetic reconstructions
DOI: 10.15468/dl.fb697g
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Ephedra distachya L."
 ]
}

 The dataset includes 217 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031544-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5073/jki-data.2015.1
title: BIVcolor benchmark

description: The dataset BIVcolor contains 100 original RGB images of 100 different vines taken at the genetic repository of the JKI, Institute of Grapevine Breeding Geilweilerhof. Images have been acquired using the PHENObot (Kicherer et al. 2015), in particular the  AVT GT-2450C  camera with a Schneider KMP-IR CINEGON 8 mm objective was used. Images have been analysed applying the  image analysis tool BIVcolor presented by Kicherer et al. 2015 and these  dataset furthermore contains the results and result images of the 100 pictures. Kicherer A, Herzog K, Pflanz M, Wieland M, Rüger P, Kecke S, et al. An automated phenotyping pipeline for application in grapevine research. Sensors. 2015;15 (3):4823-36.
DOI: 10.5281/zenodo.14413717
title: INCENTIVE Antigen-specific antibody assay
DOI: 10.5281/zenodo.14413718
title: INCENTIVE Antigen-specific antibody assay
DOI: 10.34740/kaggle/dsv/10180159
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.15468/dl.zx52r4
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liparis tanakae (Gilbert & Burke, 1912)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 247 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031545-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc358q
title: Occurrence Download

description: A dataset containing 705 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyanoptila cumatilis Thayer & Bangs, 1909"
 ]
}

 The dataset includes 705 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031546-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8388712
title: Data from: Delimiting phylogeographic diversity in the genomic era: application to an Iberian endemic frog

description: This data package includes:



cyt-b sequence alignment (fasta format, .fas) for R. parvipalmata and associated metadata (excel sheet), including origin, taxonomic assignment and lineage identity of the corresponding samples

RAD-seq sequence alignment (fasta format, .fas) and SNP matrix (structure format, .str) for R. parvipalmata, and associated metadata (excel sheet), including origin, taxonomic assignment and lineage identity of the corresponding samples

Raw morphometric data for R. parvipalmata and nearby R. temporaria (excel sheet), including body size (SVL) and 18 biometric characters, and associated metadata (sample origin, taxonomic assignement and lineage identity)
DOI: 10.5281/zenodo.8388713
title: Data from: Delimiting phylogeographic diversity in the genomic era: application to an Iberian endemic frog

description: This data package includes:



cyt-b sequence alignment (fasta format, .fas) for R. parvipalmata and associated metadata (excel sheet), including origin, taxonomic assignment and lineage identity of the corresponding samples

RAD-seq sequence alignment (fasta format, .fas) and SNP matrix (structure format, .str) for R. parvipalmata, and associated metadata (excel sheet), including origin, taxonomic assignment and lineage identity of the corresponding samples

Raw morphometric data for R. parvipalmata and nearby R. temporaria (excel sheet), including body size (SVL) and 18 biometric characters, and associated metadata (sample origin, taxonomic assignement and lineage identity)
DOI: 10.15468/dl.u7tw36
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyclogaster tanakae Gilbert & Burke, 1912",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031547-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25835/0082741
title: i.c.sens Multi-view pedestrian tracking dataset

description: This dataset was acquired for the purpose of collaborative pedestrian tracking from multiple viewpoints. This dataset consists of 29 image sequences which capture trajectories of pedestrians from three different viewpoints with three stereo camera pairs. Each captured image pair(left and right) has a global timestamp. The coressponding image sequences in different views have the same sequence number. The identity number of a pedestrian is unique and identical across viewpoints.

Example tracking results in the first viewpoint and the annotated pedestrians from the other two views:
![example](https://data.uni-hannover.de/dataset/733e368e-a481-4f85-8aac-2abcc35a0673/resource/ae60e256-a8a9-4f83-ad47-2c8824da7bc2/download/eaxmple_tracking_result.png "example tracking results")

The following ".zip" packets are provided for data set usage:

 1. Rectified stereo images captured from three viewpoints, each image has a global timestamp. 
 2. The calibration parameters (both intrinsic and extrinsic) of each stereo camera pairs are stored in "calibration.zip" which allows computing the 3D position in the global coordinate of a pixel in image space. 
 3. Ground truth annotations of pedestrians appearing in the left image of a stereo are provided for a number of image sequences. 


The details of how to use all these data and information are described in the "read_me.txt" of each ".zip" packet
DOI: 10.25835/0034324
title: GNSS mass market and geodetic receiver benchmark study

description: This dataset contains a bundle of 5 mass market receiver (ublox Neo M8T) and three geodetic graded receiver (Leica GNSS1200+GNSS, Septentrio PolaRx 5TR, Javad Delta TRE_G3T) combined in a zero baseline. The dataset captures 7 days of measurements with carrier phase, code phase, Doppler, carrier-to-noise ratio (C/N0) for GPS/GLONASS C/A code on frequency L1 for the mass market receiver and GPS/GLONASS/GALILEO L1/L2/L5 for geodetic receiver. All geodetic receiver were feeded by external rubidium clock (SRS FS725 Benchmark).
DOI: 10.25835/0055602
title: GPS Aided Camera-Tracking Course Dataset

description: This dataset was recorded for evaluating the accuracies of a GPS- and a camera-based object tracking. For this purpose, one person was equipped with several (equal) GPS loggers. Further, a camera was used to observe this person following a predefined course. Thus, this dataset contains the GPS trajectories provided by the loggers, the corresponding video and some meta information describing the setup (time synchronization, field coordinates, waypoint coordinates, camera location and the homography matrix).
DOI: 10.25835/r1myox7h
title: Solar self-sufficient households as a driving factor for sustainability transformation

description: To get the __consumption model__ from Section 3.1, one needs load execute the file consumption_data.R. Load the data for the 3 Phases ./data/CONSUMPTION/PL1.csv, PL2.csv, PL3.csv, transform the data and build the model (starting line 225). The final consumption data can be found in one file for each year in ./data/CONSUMPTION/MEGA_CONS_list.Rdata

To get the results for the __optimization problem__, one needs to execute the file analyze_data.R. It provides the functions to compare production and consumption data, and to optimize for the different values (PV, MBC,).

To __reproduce the figures__ one needs to execute the file visualize_results.R. It provides the functions to reproduce the figures.

To calculate the __solar radiation__ that is needed in the Section Production Data, follow file calculate_total_radiation.R.

To reproduce the __radiation data from from ERA5__, that can be found in data.zip, do the following steps: 1. [ERA5](https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=form) - download the reanalysis datasets as GRIB file. For FDIR select "Total sky direct solar radiation at surface", for GHI select "Surface solar radiation downwards", and for ALBEDO select "Forecast albedo". 2. convert GRIB to csv with the file era5toGRID.sh 3. convert the csv file to the data that is used in this paper with the file convert_year_to_grid.R
DOI: 10.25835/pngok8op
title: Micro-Topo-Dataset

description: This dataset contains microscopic RGB-D measurements of various topographies.
The data was acquired using a Keyence VK-X210 confocal laser scanning microscope.
A CSV file contains the metadata for all measurements, while the raw data for each measurement is stored as an npy file. Furthermore, each measurement contains the following:
* a height image
* a laser intensity image
* an RGB image
* a combined laser intensity + RGB image.
Lastly, display_dataset.ipynb is included as a demo to load the CSV and display measurement data.
DOI: 10.25835/123gy6gm
title: Measurement data of a laboratory steel cantilever beam with a reversible damage mechanism

description: The dataset contains experimental measurement data of a 1.205 m long laboratory steel cantilever beam. The cantilever beam is a modular setup of a central beam structure with nine screwed-on fishplates. The fishplates are used to implement a variable, reversible damage mechanism. The experiment was conducted in the laboratory hall of the Institute of Structural Analysis of the Leibniz University Hannover.

The central beam with nine undamaged screw-on fishplates represents the reference state of the experiment considered. The reversible damage mechanism is activated by swapping the intact fishplates with damaged fishplate specimens. Acceleration data is recorded using fifteen miniature IEPE accelerometers that are connected to the central beam structure. Three different damage scenarios were introduced, thus, the dataset comprises three measurement series. Each measurement series involves screwing the respective damaged fishplate specimen onto all nine fishplate positions in sequence. In addition, before the measurement of each damaged state of the cantilever beam, the reference state is restored and a measurement of this intact state is conducted.

For further information, it is referred to „Wolniak et al., Validation of an FE model updating procedure for damage assessment using a modular laboratory experiment with a reversible damage mechanism, Journal of Civil Structural Health Monitoring (2023), doi: 10.1007/s13349-023-00701-9“.
DOI: 10.25835/q8oa042o
title: hBN-spectroscopy

description: Confocal scans and spectroscopic measurement data of over 6000 automatically selected fluorescent spots in hexagonal boron nitride samples. Information about the experiment and data structure is contained in the info_data-structure.pdf.
DOI: 10.5281/zenodo.10037217
title: Data from: Genomic and bioacoustic variation in a midwife toad hybrid zone: a role for reinforcement?

description: This data package includes the following datasets and scripts used in the corresponding publication: 



An alignment (fasta format) of the 16S sequences obtained fromt the 221 new A. obstetricans/almogavarii samples barcoded in this study + the A. cisternasii sequence used as outgroup (16S_alignment.fas).

A matrix of 1,642 SNPs genotyped in 89 A. obstetricans/almogavarii samples used for ancestry analyses (n89p41r0.5wrs_1642SNP_STRUCTURE.str).

The R script used to compute geographic clines with HZAR and their graphical displays (Cline_analyses.r) and the input files it uses (Transect_Q_mtDNA_HZAR.csv; Transect_n57p19r0.5_diag_loci_HZAR.csv; dist_transect.txt; clines_diag_SNPs_1perlocus.csv).

The R script used for the bioacoustic analyses (Alytes_FR_Bioacoustics.r) and the corresponding input data extracted from 71 mating calls of A. obstetricans/almogavarii (Alytes_FR_Bioacoustics.csv) the R script used for their analysis.
DOI: 10.5281/zenodo.10037218
title: Data from: Genomic and bioacoustic variation in a midwife toad hybrid zone: a role for reinforcement?

description: This data package includes the following datasets and scripts used in the corresponding publication: 



An alignment (fasta format) of the 16S sequences obtained fromt the 221 new A. obstetricans/almogavarii samples barcoded in this study + the A. cisternasii sequence used as outgroup (16S_alignment.fas).

A matrix of 1,642 SNPs genotyped in 89 A. obstetricans/almogavarii samples used for ancestry analyses (n89p41r0.5wrs_1642SNP_STRUCTURE.str).

The R script used to compute geographic clines with HZAR and their graphical displays (Cline_analyses.r) and the input files it uses (Transect_Q_mtDNA_HZAR.csv; Transect_n57p19r0.5_diag_loci_HZAR.csv; dist_transect.txt; clines_diag_SNPs_1perlocus.csv).

The R script used for the bioacoustic analyses (Alytes_FR_Bioacoustics.r) and the corresponding input data extracted from 71 mating calls of A. obstetricans/almogavarii (Alytes_FR_Bioacoustics.csv) the R script used for their analysis.
DOI: 10.25835/61y9peiq
title: Deep Granulometry

description: This repository contains the data related to the paper ** "Granulometry transformer: image-based granulometry of concrete aggregate for an automated concrete production control" ** where a deep learning based method is proposed for the image based determination of concrete aggregate grading curves (cf. video).

[![Watch the video](https://github.com/MaximilianCoenen/MaxCoenen.github.io/blob/master/resources/images/klicktoplay2.png?raw=true)](https://maximiliancoenen.github.io/MaxCoenen.github.io/resources/images/2023_DeepGranulometry.mp4)

More specifically, the data set consists of images showing concrete aggregate particles and reference data of the particle size distribution (grading curves) associated to each image. 
It is distinguished between the **CoarseAggregateData** and the **FineAggregateData**. 
 
 



# Coarse Aggregate Data
The __coarse__ data consists of aggregate samples with different particles sizes ranging from 0.1 mm to 32 mm. The grading curves are designed by linearly interpolation between a very fine and a very coarse distribution for three variants with maximum grain sizes of 8 mm, 16 mm, and 32 mm, respectively. For each variant, we designed eleven grading curves, resulting in a total number 33, which are shown in the figure below. For each sample, we acquired 50 images with a GSD of 0.125 mm, resulting in a data set of 1650 images in total. Example images for a subset of the
grading curves of this data set are shown in the following figure.

![Example images and grading curves of the coarse data set](https://data.uni-hannover.de/dataset/ecb0bf04-84c8-45b1-8a43-044f3f80d92c/resource/8cb30616-5b24-4028-9c1d-ea250ac8ac84/download/examplecoarse.png " ")

 
 

# Fine Aggregate Data
Similar to the previous data set, the __fine__ data set contains grading curves for the fine
fraction of concrete aggregate of 0 to 2 mm with a GSD of 28.5 $\mu$m.
We defined two base distributions of different shapes for the upper and lower bound, respectively, resulting in two interpolated grading curve sets (Set A and Set B). In total, 1700
images of 34 different particle size distributions were acquired. Example images of the data set and the corresponding grading curves are shown in the figure below.
![Example images and grading curves of the finedata set](https://data.uni-hannover.de/dataset/ecb0bf04-84c8-45b1-8a43-044f3f80d92c/resource/c56f4298-9663-457f-aaa7-0ba113fec4c9/download/examplefine.png " ")











## Related publications:
If you make use of the proposed data, please cite. 

* **Coenen, M., Beyer, D., and Haist, M., 2023**: Granulometry Transformer: Image-based Granulometry of Concrete Aggregate for an automated Concrete Production Control. In: Proceedings of the European Conference on Computing in Construction (EC3), doi: 10.35490/EC3.2023.223.
DOI: 10.25835/727jszhs
title: Data for Atmospheric Flow Simulation Strategies to Assess Turbulent Wind Conditions for Safe Drone Operations in Urban Environments

description: This data contain all relevant model steering, output, plot, and analysis files that were used to create the publication "Atmospheric Flow Simulation Strategies to Assess Turbulent Wind Conditions for Safe Drone Operations in Urban Environments" in the journal Journal of Wind Engineering and Industrial Aerodynamics. 

The zip files must be combined into a single zip archive after the download.