cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7wy7b8hjz7
title: Interfacing of Point-of-Care Urinalysis Results and Errors

description: Supplementary File 1:  Data for point-of-care urinalysis results entered into electronic medical record either manually or by electronic interface.  The urinalysis analyzer was Clinitek Status Plus (Siemens Healthineers, Cary, NC) using either Multistix 10 SG or Uristix 4 (Siemens Healthineers) urinalysis strips.  [Tab A]:  Key for classes of errors (used in Tabs C-F) and example of errors for color and specific gravity.  [Tab B]: Interfaced data choices for the urinalysis components.  [Tab C]: Interfaced data.  Urine color and clarity are interpreted by the operator, with the choices selected within the urinalysis instrument software and then transmitted by interface to the EMR.  The remaining urinalysis results are read by the instrument and directly interfaced with the EMR electronically.  The columns with error type use the number key in Tab A.  [Tab D]: “Manual Pre-simplification” – These results are interpreted by the staff performing the test and entered into the EMR by selecting options from a series of drop-down menus. These tests were performed between January 2019 and September 2019. In October 2019, we restricted the number of options available in the provided drop-down menus to simplify data reporting and improve consistency.  The columns with error type use the number key in Tab A.  [Tab E]: Manual – Post-Simplification” – These data are similar to “manual pre-simplification” but occurred after the restriction in drop down menu options.  The columns with error type use the number key in Tab A. [Tab F]: “Enter-Edit” – These results are interpreted by the staff performing the test and then manually entered into the EMR using free text without character restrictions.  The following data (when available) were collected and found in Tabs B, C, D, and E: deidentified sample number, order description (either “Multistix 10”, “Uristix 4”, or “individual component"), age at time of testing (90 years or older reported as > 90), legal sex (male, female, or unknown), and urinalysis component data (color, clarity, glucose, bilirubin, ketones, specific gravity, blood, pH, protein, urobilinogen, nitrite, leukocyte esterase).  The columns with error type use the number key in Tab A.
DOI: 10.17632/rvcsc64k2p
title: Folded Yukawa-plus-exponential model pes for nuclei with different charge densities

description: Title of program: FYPEDIFC Catalogue Id: ABQH_v1_0 Nature of problem The deformation dependent terms of the potential energy in the folded Yukawa-plus-exponential model for nuclei with different charge densities are: volume, Coulomb and surface energies. They are expressed by an analytical relationship, two- and three-fold integrals, respectively, if one assumes nuclear shapes with axial symmetry. One has to consider separately the self-energies of the two fragments and their interaction energy. Versions of this program held in the CPC repository in Mendeley Data ABQH_v1_0; FYPEDIFC; 10.1016/0010-4655(80)90051-X This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.19918837.v1
title: stickels2021highly_Slide-seqV2_Mouse_Cerebellum

description: stickels2021highly_Slide-seqV2_Mouse_Cerebellum_SCP948.h5ad
DOI: 10.6084/m9.figshare.28658585.v1
title: <b>The seismic response of cliff-attached structures under long-period ground motion</b>

description: All the raw data needed for the research results（minimal data set）can be accessed via this data link. Datasets used in the research—Compressed files archive
DOI: 10.17632/jpy8z5h7y5
title: Geochemical data of the ferromanganese nodule from Caiwei Guyot

description: EPMA and LA-ICP-MS geochemical data of the ferromanganese nodule from Caiwei Guyot and global geochemical data
DOI: 10.17632/pb6fw2ctth
title: Pingyin Rose Essential Oil Restores Intestinal Barrier Integrity in DSS-induced Mice Colitis Model

description: Introduction: Rosa rugosa cv. Plena is a ‘drug homologous food’ in China with a long history. Pingyin rose essential oil (PREO) is a mixture of compounds extracted from blooming R. rugosa cv. Plena. With its elegant smell and excellent effects on oxidative stress and inflammation alleviation, PREO is wildly used in the food industry as a popular additive. We aimed to decipher if the PREO could alleviate and restore DSS-induced barrier integrity damages. The results showed that a 7-day PREO treatment alleviated the colitis symptoms and improved permeability depending on gene expressions. Methods: There are total five groups: Control (S1-S3), DSS model group(S4-S6), Mesalazine (60mg/kg) standard drug group(S7-S9) , 5μL/kg PREO group (S10-S12) and 15μL/kg PREO group (S13-S15).The distal colon sample was divided into two parts and was collected in RNase-free 1.5 mm tubes. One part (n=3) was subjected to transcriptome analysis from each group. According to sequencing by synthesis (SBS) Technology, the Illumina high-throughput sequencing platform sequenced the cDNA library where base quality scores can reach or exceed Q30. The edgeR was used for analysis between sample groups to attain differentially expressed gene (DEG) sets between two biological conditions. To detect DEGs, the Fold Change=1.5 and p-value≤0.05 were determined as the screening criteria. False Discovery Rate (FDR) was obtained through a significant difference in p-value calibration. Pathway significant enrichment analysis was done by taking Pathway in the KEGG database as the unit, to find pathways that are significantly enriched in DEGs compared with the background of the entire genome(Kanehisa et al., 2008). Results: According to our extensive transcriptome analysis, PREO revealed their relevancy in anti-inflammation significantly. DSS upregulated 1041 DEGs than the control group while PREO downregulated 670 DEGs compared to the DSS group (p≤0.05; FC=1.5). The KEGG enrichment presented in DSS-induced mice showed high enrichment in different inflammatory pathways while PREO and mesalazine lowered the enrichments. PREO (15μL/kg) revealed the downregulation of most of the DEGs involved in inflammatory responses . According to transcriptome analysis, Lbp, Prss3, Reg2, Reg3b, Reg3g, CxCl9, and CxCl10 were the significant genes that were over-expressed by LPS. There were several inflammatory signaling pathways like MAPK, NF-κB, IL-17, Chemokine signaling, JAK-STAT, TNF-α, Mucin biosynthesis, tight Junction, etc. Several digestive pathways, such as carbohydrate, cholesterol, and protein metabolisms, were also significantly upregulated by LPS. However, proteins from Lbp, Prss3, Reg2, Reg3b, Reg3g, CxCl9, and CxCl10 were connected in one protein-protein interaction network (PPI). PREO remarkably downregulated all these genes and pathways.
DOI: 10.6084/m9.figshare.24750087.v1
title: Part2 - Github Projects V2.xlsx

description: Projects using Dependabot and Snykbot version 2.
DOI: 10.6084/m9.figshare.28211645.v2
title: Paleomagneitc data show a Qaidam-North China connection: the paradox of the last major intra-Asian plate boundary

description: We provide here the supporting data for our submitted manuscript to Journal of Geophysical Research: Solid Earth (2025JB031123).
DOI: 10.6084/m9.figshare.29137217.v1
title: Indiana McCormick pctcanloss AGB elev treehts 15m left side

description: Spreadsheet with percent canopy loss; aboveground biomass; elevation; tree canopy heights; at 15m resolution; left side.
DOI: 10.6084/m9.figshare.7951571.v1
title: Gaussian output files (Index 010000-019999)

description: Gaussian output files (Index 010000-020000)
DOI: 10.17632/3825wsc396
title: VR-based Pedestrian Training Dataset (2018, Wuhan)

description: Objective: China has a high fatality rate for child pedestrians, which highlights the necessity of implementing more effective pedestrian safety training programs in elementary schools. We thus investigated the efficacy of using virtual reality (VR) as an instructional technology to identify and modify risky pedestrian behaviors among Chinese children. Methods: Seventy-nine children (grades 1 through 3) from three elementary schools in Hubei province participated and were categorized into urban (n = 20), migrant (n = 29), or rural (n = 30) students based on the schools’ locations. They completed a VR program comprising three street-crossing challenges to measure five pedestrian behaviors. The participants first attempted to complete the challenges by themselves in the first-time trial (T1) and then engaged in a personalized debriefing session before undertaking the challenges a second time (T2). Pedestrian performance for the two trials was compared by school location and grade level as between-subjects factors, and the rationale behind risky pedestrian behaviors was inductively analyzed. Results: Three risky pedestrian behaviors were observed in the program: dashing into the street, crossing on a blinking green light, and failing to check for traffic. Potential reasons for these behaviors included a lack of knowledge of road signs and traffic rules and the absence of daily adult supervision. The overall pedestrian performance increased from T1 to T2 with a moderate effect size (Ƞp2 = 0.59, P &lt; .001). A significant main effect of the trials was found for the three pedestrian behaviors (for all values, P &lt; .001); however, interactions of trial by location and trial by grade were nonsignificant in all univariate tests (for all values, P ≥ .05). Conclusions: VR is an effective technology to diagnose and correct risky pedestrian behaviors among Chinese children when accompanied with individual debriefing and repetitive practices. School location and grade level had no significant influence on children’s pedestrian performance and learning outcomes, indicating the ubiquity of the pedestrian safety problem and the need for more effective instructional interventions.
DOI: 10.6084/m9.figshare.13102520.v1
title: Conjectural-Variations Equilibria in Electricity, Natural-Gas, and Carbon-Emission Markets

description: The data of a three-bus power system and three-node natural-gas system is attached.
DOI: 10.6084/m9.figshare.22578352.v1
title: Supplementary Material for: The optimization of outpatient hemodialysis management for AKI-D patients: A quality improvement study

description: Introduction: In 2017, the Centers for Medicare and Medicaid Services allowed survivors of hospitalized acute kidney injury requiring dialysis (AKI-D) who were ambulatory and still dependent on hemodialysis (HD) to receive treatment in outpatient dialysis facilities. This policy change generated the ongoing need to improve AKI-D care in the outpatient setting. Methods: Quality improvement study in adult patients admitted to an outpatient HD unit with the diagnosis of AKI-D. We developed a protocol to manage these patients that included: a) multidisciplinary evaluations; b) personalized 3-tier HD prescription for dose/ultrafiltration rate and frequency; c) weekly assessment of kidney recovery; and d) patient empowerment. Patient- and protocol-specific characteristics were described. We analyzed hourly HD data and protocol adherence, and relevant hemodynamic data were compared according to HD-free survival at 90 days. Results: A total of 457.3 hours of HD from nine patients under the AKI-D protocol were interrogated. Three out of nine patients were alive and liberated from HD within the first 90 days of outpatient HD. Overall protocol adherence was 53.8% and did not differ by HD-free survival (54.5% vs. 53.7% in those that recovered vs. not). Protocol adherence was associated with fewer intradialytic hypotension events (peak to nadir BP, p&lt;0.01), while intradialytic hypotension (pre to post BP) occurred more frequently in patients who did not recover kidney function (p=0.009). Conclusion: We demonstrated the feasibility of implementing a management protocol for AKI-D patients in an outpatient dialysis facility. We found that fewer episodes of intradialytic hypotension occurred when the outpatient HD management was adherent to the protocol. The feasibility of this protocol should be confirmed in other facilities, and importantly, efficacy testing to evaluate its impact on AKI-D outpatient care is necessary.
DOI: 10.6084/m9.figshare.26087800.v1
title: HiGTS_2006s2

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2006s2 contains the data from April 1, 2006 to June 30, 2006.
DOI: 10.6084/m9.figshare.1348804.v6
title: Protein orientation near a charged surface using PyGBe and protein G B1 D4

description: Reproducibility package containing data, running script, plotting script and final plot of the protein-orientation study for protein G B1 D4' near a charged surface.The running script invokes the open-source bioelectrostatics solver PyGBe with the given input data, computes the orientation probability distribution and plots the final result. The file set includes: —1 mesh, 2 bodies<br>—PQR file<br>—mesh-generation script for sensor surface<br>—input parameters and running script for mesher<br>—input file for PyGBe and running script<br>—CSV file of output (tilt, rotation, energy)<br>—Figure 11 of the paper and plotting script This result is part of the publication: —<strong>"Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design,"</strong> Christopher D. Cooper, Natalia C. Clementi, Lorena A. Barba; <i>J. Chem. Phys</i>., Vol. 143: 124709 (2015) PyGBe solves biomolecular electrostatics problems using an implicit-solvent model (Poisson-Boltzmann) and it uses GPU hardware for fast execution. It is written in Python, PyCUDA and CUDA. More information about the PyGBe code in: —<em>"Validation of the PyGBe code for Poisson-Boltzmann equation with boundary element methods."</em> Christopher Cooper, Lorena A. Barba. figshare. http://dx.doi.org/10.6084/m9.figshare.154331 —"A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers", Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba. <em>Comput. Phys. Comm.</em>, <strong>185</strong>(3):720–729 (March 2014). 10.1016/j.cpc.2013.10.028 // Preprint arXiv:1309.4018 <strong>Acknowledgement:</strong> This research is made possible by support from the Office of Naval Research, Applied Computational Analysis Program, N00014-11-1-0356. LAB also acknowledges support from NSF CAREER award OCI-1149784.
DOI: 10.6084/m9.figshare.19372739.v1
title: Antibody capture beads

description: Examples of goat anti-rat IgG coupled polystyrene microspheres<br>
DOI: 10.6084/m9.figshare.19564270.v1
title: Genome-wide association studies, runs of homozygosity analysis, and copy number variation detection to identify reproduction-related genes in Bama Xiang pigs

description: A total 403 Bama Xiang pig Illumina PorcineSNP50 BeadChip array.
DOI: 10.6084/m9.figshare.21524886.v2
title: Xyloglucanase Figures 1-6 (data)

description: Data from “Duplication and Neofunctionalization of a horizontally transferred xyloglucanase as a facet of the Red Queen coevolutionary dynamic.”
DOI: 10.6084/m9.figshare.26172763.v2
title: ASEBIO (Assessment of Ecosystem Services, Biodiversity, and Well-Being in Portugal) datasets

description: This Zip file contains all the 8 Ecosystem Services data models and outputs from the ASEBIO research project that you can find in our WebGIS platform: ASEBIO – ASEBIO – Assessment of Ecosystem Services, Biodiversity, and Well-Being in Portugal (unl.pt)Study Area: Continental Portugal<br>Ecosystem Services Models:Food Supply; Drought Regulation; Climate Regulation; Pollination, Habitat Quality; Recreation; Water Purification; Erosion PreventionData FormatZIPTIFFRASTERSpatial Resolution27m: Water Purification; Erosion Prevention100m: Food Supply; Drought Regulation; Climate Regulation; Pollination, Habitat Quality; Recreation<br>Funded by Portuguese Science Foundation, Project reference: PTDC/CTA-AMB/28438/2017Related publications:<br>David, J., Cabral, P. & Campos, F. S. (2024). Humans vs models: a comparative assessment integrating ecosystem services models with stakeholders´ perceptions. Scientific Reports (<b>in press</b>)Cabral, P., Campos, F. S., David, J., & Caser, U. (2021). Disentangling ecosystem services perception by stakeholders: An integrative assessment based on land cover. Ecological Indicators, 126, 107660. https://doi.org/10.1016/j.ecolind.2021.107660Campos, F.S., David, J., Lourenço-de-Moraes, R., Vieira da Silva, C., Cabral, P. (2021). The economic and ecological benefits of saving ecosystems to protect services. Journal of Cleaner Production, 2021, 311, 127551. https://doi.org/10.1016/j.jclepro.2021.127551WebGIS ASEBIO: https://asebio-webgis-novagis.hub.arcgis.com/<br>
DOI: 10.6084/m9.figshare.28870511.v1
title: Phase Instability Simulation in Anti-Time via Quantum Fourier Transform (QFT)

description: This dataset contains the OpenQASM 2.0 source code and measurement results of a quantum simulation modeling the phase instability caused by anti-particle accumulation in the context of anti-time theory. The simulation uses a 5-qubit quantum circuit where three qubits represent phase registers, and two qubits encode anti-particles with distinct phase contributions. A quantum Fourier transform (QFT) is applied to extract the composite phase response.The setup is aligned with a theoretical framework in which anti-particles accumulate in the anti-time dimension and induce phase distortion effects on virtual particle registers. This distortion is modeled as entropic instability that could contribute to transitions into anti-matter formation and eventually dark energy transformation.The simulation was executed using IBM Quantum Composer with 8192 shots and measured through standard QFT readout techniques. Researchers can reuse or adapt this model to explore collective quantum effects in cosmological contexts.
DOI: 10.6084/m9.figshare.7710485.v1
title: Effects of Aliskiren, an RAAS inhibitor, on a carrageenan-induced pleurisy model of rats

description: Abstract Our aim is to investigate the potentially preventive effects of Aliskiren in a carrageenan-induced lung pleurisy model and to compare the standard anti-inflammatory agents, indomethacin and dexamethasone. The pleurisy model was induced through the injection of carrageenan (0.2 ml-%2) into the pleural cavity. After the experiment, serum and lung tissues were collected and biochemical, molecular and pathological examinations were performed. In our study, pleural inflammation decreased superoxide dismutase activity and the glutathione level and increased the malondialdehyde level in the lung of rats, while Aliskiren increased the superoxide dismutase activity and glutathione level and decreased the malondialdehyde level. In addition, carrageenan-induced pleurisy caused a significant increase in pro-inflammatory cytokines mRNA expressions (TNF-α, IL-1β, and NF-KB), while Aliskiren administration decreased their expressions as well as the standard treatments, indomethacin and dexamethasone, did. Aliskiren administration at the 200 mg/kg dose protected the lungs in the pathological evaluation, especially against inflammatory cell infiltration and edematous lesions. It appears that Aliskiren protects the lung from carrageenan-induced pleurisy damage by regulating inflammation and antioxidant-oxidant balance via Renin Angiotensin Aldosterone System inhibition.
DOI: 10.6084/m9.figshare.12248318.v2
title: PDP Code and data.zipThe Point-Descriptor-Precedence

description: This code along with the data can be used for finding a particular movement pattern in a given motion dataset using the Point-Direction-Precedence (PDP).
DOI: 10.6084/m9.figshare.22655107.v1
title: Soil nitrogen mineralization dataset

description: A meta-analysis of 97 published research articles and compiled a database comprised of 406 observations
DOI: 10.6084/m9.figshare.23099051.v1
title: ForceFields_SI.tar.gz

description: Force fields used for DOS calculations
DOI: 10.25399/unisadata.28788068.v1
title: Artefacts from Mthambotini, 2023

description: This data concerns the indigenisation of the Science, Mathematics and Technology Education Programme at the postgraduate level. The data was collected in Mthambotini, Mpumalanga, with the indigenous knowledge holders in the form of artefacts. A camera was used to take pictures of the artefacts. The main purpose of collecting this data was to reveal the science, mathematics, and technology knowledge enshrined in the artefacts. This has huge implications for the indigenisation of the programmes down to the curriculum to promote the transformation of education in South Africa and beyond.
DOI: 10.6084/m9.figshare.1204999.v4
title: Author Insights 2014

description: Raw data from Nature Publishing Group and Palgrave Macmillan's annual Author Insights survey. Verbatims and other identifying fields redacted.
DOI: 10.6084/m9.figshare.12799943.v1
title: GPS data

description: Stations: HKKT, HKLT, HKOH, HKSC, HKSS, HKWS, HKNPTime: 16 to 26 August 2017
DOI: 10.17632/5m38z6jthb
title: Healthy Potato Image Dataset

description: This is an image dataset of healthy potato in the perspective of Bangladesh. All the images are digital colored and in high quality. This dataset can be a valuable resource for computer and agriculture researchers. It can be used to develop new and innovative methods for potato disease detection, yield estimation, climate change research, and potato breeding.
DOI: 10.17632/6dv3f6rxyv
title: Square Prep Technique Demonstration Video

description: This video illustrates the square prep technique for scalp excision field preparation.
DOI: 10.17632/r56jxvyycv
title: Dataset_Barros_2020

description: Dataset of the manuscript entitled "Long term visuo-vestibular mismatch in freely behaving mice differentially affects gaze stabilizing reflexes" by Barros, Schenberg, Tagliabue, Beraneck
DOI: 10.6084/m9.figshare.19592926.v1
title: XSS-dataset

description: Cross-site-scripting attacks: A Comprehensive dataset for AI techniques usage
DOI: 10.6084/m9.figshare.26831581.v1
title: univariate regression of participants

description: The study showed that participants who received emergency aid, used masks, took medications, were vaccinated, or had chronic conditions (diabetes and hypertension) were more likely to perceive a risk of severe COVID-19. Conversely, those with a health clinic in their neighborhood were less likely to perceive this risk. These findings underscore the link between chronic diseases and risk perception, these results may could help health authorities tailor their strategies to the needs of vulnerable populations, enhancing education and awareness about preventive measures.