cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.156395.v62
title: 2nd year Drosophila Developmental Genetics practical

description: This is the teaching material for the <em>Drosophila</em> module of the Developmental Genetics RSM (research skills module) held at the Faculty of Biology, Medicine and Health of The University of Manchester each year. This practical course runs over 6 days and is organised and supervised by Andreas Prokop. This module has been taught and optimised over a few years. Emphasis is on: <em>1) Drosophila</em> as a model system in research 2) the use of fly genetics (transgenic approaches and mutations) in combination with histological techniques to study mechanisms of development 3) transferable skills including how to design figures and their legends, how to compose laboratory protocols and how to file data securely This module also shows how practical work can be intercalated with exercises on applied fly genetics training, thus filling gaps in experimental protocols with useful activities, enriching the learning outcome and enhancing the fundamental understanding of <em>Drosophila</em> as a model organism. To make this genetics training accredited even on large courses, a novel hybrid e-assessment strategy has been developed, and we regularly apply it on our courses (50-65 students). This e-assessment and its principal strategies have been published in the G3 journal and a test exam is available online (3rd link below). Please, submit any comments in the comment box below or contact me directly: Andreas.Prokop@manchester. ac.uk Note, that a Powerpoint presentation "Roote+Prokop-SupplMat-3.ppt" is required on this module. It can be accessed from the second link below. It is also directly linked out from the two manuals in this resource.
DOI: 10.6084/m9.figshare.22058801
title: Untitled ItemFIR FILTER

description: FIR FILTER MODULE <br>
DOI: 10.6084/m9.figshare.22058801.v1
title: Untitled ItemFIR FILTER

description: FIR FILTER MODULE <br>
DOI: 10.6084/m9.figshare.20306439
title: Noise correlation waveform datasets and dispersion measurements of "Crustal Imprints of Multiple Tectonomagmatic Reactivation in the Southern Korean Peninsula from Transdimensional Bayesian Tomography"

description: skorea_ACC.corr.tar.gz includes results of ambient noise correlograms in vertical components for accelerometer station pairs. The name of files are indicated by AVG_CORR.{network of station1}.{name of station1}.{component of station1}_{network of station2}.{name of station2}.{component of station2} SKOREA_CORR.tar.gz includes results of ambient noise correlograms in vertical components for broadband station pairs. The name of files are indicated by AVG_CORR.{network of station1}.{name of station1}.{component of station1}_{network of station2}.{name of station2}.{component of station2}. NTAC_MEASUREMENT.tar.gz includes results of group and phase velocity measurements obtained from ambient noise correlograms of accelerometer station pairs. NABB_MEASUREMENT.tar.gz includes results of group and phase velocity measurements obtained from ambient noise correlograms of broadband station pairs.
DOI: 10.6084/m9.figshare.20306439.v1
title: Noise correlation waveform datasets and dispersion measurements of "Crustal Imprints of Multiple Tectonomagmatic Reactivation in the Southern Korean Peninsula from Transdimensional Bayesian Tomography"

description: skorea_ACC.corr.tar.gz includes results of ambient noise correlograms in vertical components for accelerometer station pairs. The name of files are indicated by AVG_CORR.{network of station1}.{name of station1}.{component of station1}_{network of station2}.{name of station2}.{component of station2} SKOREA_CORR.tar.gz includes results of ambient noise correlograms in vertical components for broadband station pairs. The name of files are indicated by AVG_CORR.{network of station1}.{name of station1}.{component of station1}_{network of station2}.{name of station2}.{component of station2}. NTAC_MEASUREMENT.tar.gz includes results of group and phase velocity measurements obtained from ambient noise correlograms of accelerometer station pairs. NABB_MEASUREMENT.tar.gz includes results of group and phase velocity measurements obtained from ambient noise correlograms of broadband station pairs.
DOI: 10.6084/m9.figshare.20306439.v2
title: Noise correlation waveform datasets and dispersion measurements of "Crustal Imprints of Multiple Tectonomagmatic Reactivation in the Southern Korean Peninsula from Transdimensional Bayesian Tomography"

description: skorea_ACC.corr.tar.gz includes results of ambient noise correlograms in vertical components for accelerometer station pairs. The name of files are indicated by AVG_CORR.{network of station1}.{name of station1}.{component of station1}_{network of station2}.{name of station2}.{component of station2} SKOREA_CORR.tar.gz includes results of ambient noise correlograms in vertical components for broadband station pairs. The name of files are indicated by AVG_CORR.{network of station1}.{name of station1}.{component of station1}_{network of station2}.{name of station2}.{component of station2}. NTAC_MEASUREMENT.tar.gz includes results of group and phase velocity measurements obtained from ambient noise correlograms of accelerometer station pairs. NABB_MEASUREMENT.tar.gz includes results of group and phase velocity measurements obtained from ambient noise correlograms of broadband station pairs.
DOI: 10.6084/m9.figshare.22058846.v1
title: Supplementary Material for: Association Between Smoking Cessation and the Risk of Cholangiocarcinoma and Ampulla of Vater Cancer: A Nationwide Cohort Study

description: Introduction: The association between smoking cessation and intrahepatic and extrahepatic cholangiocarcinoma (iCCA and eCCA) risk is unclear. Furthermore, the association in individuals with preexisting risk factors is unknown. We aimed to investigate the association between smoking status (especially smoking cessation) and CCA risk according to individuals’ glycemic status. Methods: In this nationwide cohort study, 9,520,629 adults without cancer who underwent national health screening by the Korean National Health Insurance Service in 2009 were followed up through 2018. The hazard ratios (HRs) and 95% confidence intervals (CIs) for CCA were estimated after adjusting for potential confounders. Results: During the 78.3 person-years of follow-up, 16,236 individuals were newly diagnosed with CCA. Quitters had a significantly lower risk of iCCA and eCCA compared to current smokers in all glycemic status groups (all P&lt;0.01). The HRs (95% CIs) for iCCA in current smokers and quitters were 1.33 (1.24–1.43) vs. 0.98 (0.90–1.06) in individuals with normoglycemia, 1.49 (1.37–1.63) vs. 1.17 (1.06–1.28) in individuals with prediabetes, and 2.15 (1.96–2.37) vs. 1.58 (1.42–1.75) in individuals with diabetes, compared to never-smokers with normoglycemia. Current smokers with diabetes or prediabetes had a synergistically increased risk of iCCA (all P&lt;0.01). However, quitters with diabetes and prediabetes had an iCCA risk comparable to that of never-smokers. Analysis of eCCA yielded similar results. Smoking was not independently associated with the risk of the ampulla of Vater cancer. However, smoking combined with diabetes or prediabetes was associated with an increased risk of the ampulla of Vater cancer (all P&lt;0.05). Discussion/Conclusion: Smoking cessation was associated with a reduced risk of CCA, despite the synergistically increased risk in current smokers with diabetes and prediabetes. Our findings suggest a crucial opportunity to reduce the risk of CCA. More individualized and intensive cancer prevention education is needed against CCA.
DOI: 10.6084/m9.figshare.22058846
title: Supplementary Material for: Association Between Smoking Cessation and the Risk of Cholangiocarcinoma and Ampulla of Vater Cancer: A Nationwide Cohort Study

description: Introduction: The association between smoking cessation and intrahepatic and extrahepatic cholangiocarcinoma (iCCA and eCCA) risk is unclear. Furthermore, the association in individuals with preexisting risk factors is unknown. We aimed to investigate the association between smoking status (especially smoking cessation) and CCA risk according to individuals’ glycemic status. Methods: In this nationwide cohort study, 9,520,629 adults without cancer who underwent national health screening by the Korean National Health Insurance Service in 2009 were followed up through 2018. The hazard ratios (HRs) and 95% confidence intervals (CIs) for CCA were estimated after adjusting for potential confounders. Results: During the 78.3 person-years of follow-up, 16,236 individuals were newly diagnosed with CCA. Quitters had a significantly lower risk of iCCA and eCCA compared to current smokers in all glycemic status groups (all P&lt;0.01). The HRs (95% CIs) for iCCA in current smokers and quitters were 1.33 (1.24–1.43) vs. 0.98 (0.90–1.06) in individuals with normoglycemia, 1.49 (1.37–1.63) vs. 1.17 (1.06–1.28) in individuals with prediabetes, and 2.15 (1.96–2.37) vs. 1.58 (1.42–1.75) in individuals with diabetes, compared to never-smokers with normoglycemia. Current smokers with diabetes or prediabetes had a synergistically increased risk of iCCA (all P&lt;0.01). However, quitters with diabetes and prediabetes had an iCCA risk comparable to that of never-smokers. Analysis of eCCA yielded similar results. Smoking was not independently associated with the risk of the ampulla of Vater cancer. However, smoking combined with diabetes or prediabetes was associated with an increased risk of the ampulla of Vater cancer (all P&lt;0.05). Discussion/Conclusion: Smoking cessation was associated with a reduced risk of CCA, despite the synergistically increased risk in current smokers with diabetes and prediabetes. Our findings suggest a crucial opportunity to reduce the risk of CCA. More individualized and intensive cancer prevention education is needed against CCA.
DOI: 10.18454/rulb.2023.38.12.1
title: Distinctive Characteristics of Educational and Speech Situation and Problematic Teaching and Speech Situation

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.18454/rulb.2023.38.12.2
title: Types of Reading as the Basis for the Development of a Monologue

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.18454/rulb.2023.38.12.3
title: Model of Learning Monologue Speech Based on Reading Using the Technology of Problem-Based Learning

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.18454/rulb.2023.38.5.1
title: The design of the experiment

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.18454/rulb.2023.38.6.3
title: Relations between conceptual and grammatical plurality

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.18454/rulb.2023.38.4.1
title: Сравнение особенностей русскоязычного и англоязычного научного дискурса

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.18454/rulb.2023.38.6.8
title: Answers to the questionnaire

description: Russian Linguistic Bulletin, Выпуск 2 (38) 2023
DOI: 10.6084/m9.figshare.22058861
title: Supplementary Material for: Association Between Smoking Cessation and the Risk of Cholangiocarcinoma and Ampulla of Vater Cancer: A Nationwide Cohort Study

description: Introduction: The association between smoking cessation and intrahepatic and extrahepatic cholangiocarcinoma (iCCA and eCCA) risk is unclear. Furthermore, the association in individuals with preexisting risk factors is unknown. We aimed to investigate the association between smoking status (especially smoking cessation) and CCA risk according to individuals’ glycemic status. Methods: In this nationwide cohort study, 9,520,629 adults without cancer who underwent national health screening by the Korean National Health Insurance Service in 2009 were followed up through 2018. The hazard ratios (HRs) and 95% confidence intervals (CIs) for CCA were estimated after adjusting for potential confounders. Results: During the 78.3 person-years of follow-up, 16,236 individuals were newly diagnosed with CCA. Quitters had a significantly lower risk of iCCA and eCCA compared to current smokers in all glycemic status groups (all P&lt;0.01). The HRs (95% CIs) for iCCA in current smokers and quitters were 1.33 (1.24–1.43) vs. 0.98 (0.90–1.06) in individuals with normoglycemia, 1.49 (1.37–1.63) vs. 1.17 (1.06–1.28) in individuals with prediabetes, and 2.15 (1.96–2.37) vs. 1.58 (1.42–1.75) in individuals with diabetes, compared to never-smokers with normoglycemia. Current smokers with diabetes or prediabetes had a synergistically increased risk of iCCA (all P&lt;0.01). However, quitters with diabetes and prediabetes had an iCCA risk comparable to that of never-smokers. Analysis of eCCA yielded similar results. Smoking was not independently associated with the risk of the ampulla of Vater cancer. However, smoking combined with diabetes or prediabetes was associated with an increased risk of the ampulla of Vater cancer (all P&lt;0.05). Discussion/Conclusion: Smoking cessation was associated with a reduced risk of CCA, despite the synergistically increased risk in current smokers with diabetes and prediabetes. Our findings suggest a crucial opportunity to reduce the risk of CCA. More individualized and intensive cancer prevention education is needed against CCA.
DOI: 10.6084/m9.figshare.22058861.v1
title: Supplementary Material for: Association Between Smoking Cessation and the Risk of Cholangiocarcinoma and Ampulla of Vater Cancer: A Nationwide Cohort Study

description: Introduction: The association between smoking cessation and intrahepatic and extrahepatic cholangiocarcinoma (iCCA and eCCA) risk is unclear. Furthermore, the association in individuals with preexisting risk factors is unknown. We aimed to investigate the association between smoking status (especially smoking cessation) and CCA risk according to individuals’ glycemic status. Methods: In this nationwide cohort study, 9,520,629 adults without cancer who underwent national health screening by the Korean National Health Insurance Service in 2009 were followed up through 2018. The hazard ratios (HRs) and 95% confidence intervals (CIs) for CCA were estimated after adjusting for potential confounders. Results: During the 78.3 person-years of follow-up, 16,236 individuals were newly diagnosed with CCA. Quitters had a significantly lower risk of iCCA and eCCA compared to current smokers in all glycemic status groups (all P&lt;0.01). The HRs (95% CIs) for iCCA in current smokers and quitters were 1.33 (1.24–1.43) vs. 0.98 (0.90–1.06) in individuals with normoglycemia, 1.49 (1.37–1.63) vs. 1.17 (1.06–1.28) in individuals with prediabetes, and 2.15 (1.96–2.37) vs. 1.58 (1.42–1.75) in individuals with diabetes, compared to never-smokers with normoglycemia. Current smokers with diabetes or prediabetes had a synergistically increased risk of iCCA (all P&lt;0.01). However, quitters with diabetes and prediabetes had an iCCA risk comparable to that of never-smokers. Analysis of eCCA yielded similar results. Smoking was not independently associated with the risk of the ampulla of Vater cancer. However, smoking combined with diabetes or prediabetes was associated with an increased risk of the ampulla of Vater cancer (all P&lt;0.05). Discussion/Conclusion: Smoking cessation was associated with a reduced risk of CCA, despite the synergistically increased risk in current smokers with diabetes and prediabetes. Our findings suggest a crucial opportunity to reduce the risk of CCA. More individualized and intensive cancer prevention education is needed against CCA.
DOI: 10.6084/m9.figshare.21994868.v4
title: Files for Main Figure 1

description: <strong>Files need to generate Main Figure 1</strong> <br> 1. Long_read_TE_fc: Transposable elements individual quantified featureCounts result using long-read 2. Short_read_TE_fc: Transposable elements individual quantified featureCounts result using short-read 3. Long_read_coding_genes_fc: Coding genes quantified featureCounts result using long-read 4. Short_read_coding_genes_fc: Coding genes individual quantified featureCounts result using long-read <br> 5. ownHCT116_telescope_average+option.tsv: Telescope output using ownHCT116 with reassign mode sets as "average" <br> 6. ownHCT116_telescope_exclude+option.tsv: Telescope output using ownHCT116 with reassign mode sets as "exclude"
DOI: 10.6084/m9.figshare.22058873
title: Supplementary Material for: Association Between Smoking Cessation and the Risk of Cholangiocarcinoma and Ampulla of Vater Cancer: A Nationwide Cohort Study

description: Introduction: The association between smoking cessation and intrahepatic and extrahepatic cholangiocarcinoma (iCCA and eCCA) risk is unclear. Furthermore, the association in individuals with preexisting risk factors is unknown. We aimed to investigate the association between smoking status (especially smoking cessation) and CCA risk according to individuals’ glycemic status. Methods: In this nationwide cohort study, 9,520,629 adults without cancer who underwent national health screening by the Korean National Health Insurance Service in 2009 were followed up through 2018. The hazard ratios (HRs) and 95% confidence intervals (CIs) for CCA were estimated after adjusting for potential confounders. Results: During the 78.3 person-years of follow-up, 16,236 individuals were newly diagnosed with CCA. Quitters had a significantly lower risk of iCCA and eCCA compared to current smokers in all glycemic status groups (all P&lt;0.01). The HRs (95% CIs) for iCCA in current smokers and quitters were 1.33 (1.24–1.43) vs. 0.98 (0.90–1.06) in individuals with normoglycemia, 1.49 (1.37–1.63) vs. 1.17 (1.06–1.28) in individuals with prediabetes, and 2.15 (1.96–2.37) vs. 1.58 (1.42–1.75) in individuals with diabetes, compared to never-smokers with normoglycemia. Current smokers with diabetes or prediabetes had a synergistically increased risk of iCCA (all P&lt;0.01). However, quitters with diabetes and prediabetes had an iCCA risk comparable to that of never-smokers. Analysis of eCCA yielded similar results. Smoking was not independently associated with the risk of the ampulla of Vater cancer. However, smoking combined with diabetes or prediabetes was associated with an increased risk of the ampulla of Vater cancer (all P&lt;0.05). Discussion/Conclusion: Smoking cessation was associated with a reduced risk of CCA, despite the synergistically increased risk in current smokers with diabetes and prediabetes. Our findings suggest a crucial opportunity to reduce the risk of CCA. More individualized and intensive cancer prevention education is needed against CCA.
DOI: 10.6084/m9.figshare.22058873.v1
title: Supplementary Material for: Association Between Smoking Cessation and the Risk of Cholangiocarcinoma and Ampulla of Vater Cancer: A Nationwide Cohort Study

description: Introduction: The association between smoking cessation and intrahepatic and extrahepatic cholangiocarcinoma (iCCA and eCCA) risk is unclear. Furthermore, the association in individuals with preexisting risk factors is unknown. We aimed to investigate the association between smoking status (especially smoking cessation) and CCA risk according to individuals’ glycemic status. Methods: In this nationwide cohort study, 9,520,629 adults without cancer who underwent national health screening by the Korean National Health Insurance Service in 2009 were followed up through 2018. The hazard ratios (HRs) and 95% confidence intervals (CIs) for CCA were estimated after adjusting for potential confounders. Results: During the 78.3 person-years of follow-up, 16,236 individuals were newly diagnosed with CCA. Quitters had a significantly lower risk of iCCA and eCCA compared to current smokers in all glycemic status groups (all P&lt;0.01). The HRs (95% CIs) for iCCA in current smokers and quitters were 1.33 (1.24–1.43) vs. 0.98 (0.90–1.06) in individuals with normoglycemia, 1.49 (1.37–1.63) vs. 1.17 (1.06–1.28) in individuals with prediabetes, and 2.15 (1.96–2.37) vs. 1.58 (1.42–1.75) in individuals with diabetes, compared to never-smokers with normoglycemia. Current smokers with diabetes or prediabetes had a synergistically increased risk of iCCA (all P&lt;0.01). However, quitters with diabetes and prediabetes had an iCCA risk comparable to that of never-smokers. Analysis of eCCA yielded similar results. Smoking was not independently associated with the risk of the ampulla of Vater cancer. However, smoking combined with diabetes or prediabetes was associated with an increased risk of the ampulla of Vater cancer (all P&lt;0.05). Discussion/Conclusion: Smoking cessation was associated with a reduced risk of CCA, despite the synergistically increased risk in current smokers with diabetes and prediabetes. Our findings suggest a crucial opportunity to reduce the risk of CCA. More individualized and intensive cancer prevention education is needed against CCA.
DOI: 10.57745/svczw9
title: Exp B_LP_BBI_19P04_LP_Plasma.zip

description: 500MHz NMR files of 1H-NMR (cpmg and zgpr) spectra of plasma of selected and non-selected rainbow trout fed a commercial-like diet (COM-B), a plant-based diet (PB3) and the same plant-based diet supplemented with 5% insect hydrolysate extract and 5% yeast wall extract (IY3)
DOI: 10.57745/4rjavr
title: Exp B_Rosetta Stone.tab

description: Correspondance table of sample names used in Exp B NMR dataset and in the publication Roques et al., 2023 (submitted)
DOI: 10.57745/ewnncf
title: Exp A_Rosetta Stone.tab

description: Correspondance table of sample names used in Exp A NMR dataset and in the publication Roques et al., 2023 (submitted)
DOI: 10.57745/8lpia9
title: Exp A_SR_BBI_17P03_BF_Plasma_MEL.zip

description: 500MHz NMR files of 1H-NMR (cpmg and zgpr) spectra of plasma of rainbow trout fed a commercial-like diet (COM-A), two plant-based diets (PB1 and PB2) and the same plant-based diets supplemented with 5% insect hydrolysate extract, 5% spirullina meal and 5% yeast wall extract (ISY1 and ISY2)
DOI: 10.57745/w5quli
title: 0_Read_me_Trout Mix ingredients Selection Line - NMR.pdf

description: Description of the dataset used in the manuscript Roques et al 2023 (submitted)
DOI: 10.57745/gov4b0
title: 3- MMBBI_14P14-383 to 574 169 spectra.zip

description: 169 NMR spectra directories in Bruker format of maize leaf extract
DOI: 10.57745/xyc9gq
title: 2- Rosetta Stone NMR Maize Leaf Mild Nitrogen.tab

description: Correspondance table of sample names used in NMR dataset and in the publication Urrutia et al., 2022 (submitted)
DOI: 10.57745/krlbdk
title: 5- Leaf metabolite contents measured by NMR in the panel of 29 maize hybrids Mild Nitrogen.xls

description: Maize Leaf metabolite contents measured by 1HNMR - Hybrids Mild Nitrogen
DOI: 10.57745/nevn2p
title: 4- Maize Leaf NMR annotation.xls

description: Table of chemical shifts used for identification and quantification of metabolites in 1D 1H-NMR spectra of polar extracts (in deuterated phosphate buffer solution, apparent pH 6.0) of maize leaf, expressed as relative values to the TSP resonance at 0 ppm.
DOI: 10.5281/zenodo.7553014
title: Testing Database Engines via Query Plan Guidance

description: This artifact is the supplementary material for the paper "Testing Database Engines via Query Plan Guidance" that is published in ICSE'23. In the paper, we propose a new concept called Query Plan Guidance (QPG) for testing Database Management Systems (DBMSs). QPG tackles the test case generation problem by guiding test case generation towards exploring a variety of unique query plans. We found 50+ unique, previously-unknown bugs in SQLite, TiDB, and CockroachDB. The prototype of QPG is a Java project, and we provide Dockerfiles to reproduce our three key empirical results.