cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22239817.v1
title: Supplementary Material for: Circulating endothelial cell (CEC) kinetic in patients with Multiple Myeloma (MM) who receive Au-HSCT (Autologous Hematopoietic Stem Cell Transplantation)

description: Introduction: Neoangiogenesis has a crucial role in Multiple Myeloma (MM) and Circulating Endothelial Cells (CECs) contribute to neovascularization by inducing tumor progression and metastasis and by repairing damage to bone marrow vasculature after stem cell transplantation (HSC). We recently proved in a national multicenter study, the possibility to reach a high level standardization in CEC count and analysis based on a polychromatic flow cytometry Lyotube (BD). Our study aimed at assessing the kinetics of CECs in patients with MM undergoing autologous hematopoietic stem cell transplantation (Au-HSCT). Methods: Blood samples for analysis were collected at different time points before (T0, T1) and after (T2, T3, T4) Au-HSCT. For each sample, 20 × 106 leukocytes were processed as already described (Lanuti 2016 e 2018) through a multistep procedure. CECs were eventually identified as 7-ADDneg/Syto16pos/CD45neg/CD34pos/CD146pos. Results:Twenty-six MM patients were enrolled in the study. Overall, we observed a constant increase of CECs values from T0 to T3 (day of neutrophil engraftment) followed by decrease at T4 (100 days after transplantation). Using the median value of CECs at T3 we could define a cut-off concentration of 618/mL, with patients with more infective complications having CECs above that value (9/13 vs 2/13; P = .005). Conclusion: CECs value may be a function of endothelial damage caused by conditioning regimen, as suggested by the increase of their level during the engraftment period. A more severe endothelial damage is reflected by the increase of infective complications in patients with higher CECs value at T3.
DOI: 10.17632/j48g7cn2r7
title: Research Data

description: This is the raw data for "Microbial extracellular enzyme activities become C-limited by vegetational responses to nitrogen fertilization and changes in water supply in a dry steppe".
DOI: 10.17632/7hm3ttxtdk
title: Zero Energy Building

description: Zero Energy Building-Passive Techniques
DOI: 10.17632/k649wry45p
title: Attitude towards digital banking products based on the UTAUT model with rural customers' data

description: This is a data for an article
DOI: 10.6084/m9.figshare.19499630.v1
title: patches and local annotations, slide 104, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.7266/n7h70d5p
title: Interfacial tension between Louisiana Sweet Crude oil and methane
DOI: 10.17632/mty7sk4jgf
title: Replication File for Consumption, Exchange Rate, and External Adjustment During a Crisis

description: This file contains materials to replicate both the empirical and theoretical results of Consumption, Exchange Rate, and External Adjustment During a Crisis.
DOI: 10.6084/m9.figshare.24893265.v2
title: Table S1

description: GSEA pathway analysis of the contracting C2C12 myotubes under different nutritional conditions using different data bases (GOBP, KEGG and REACTOME).
DOI: 10.21233/4mhx-fs93
title: ALBI37 pollen surface sample dataset

description: Raw data for the ALBI37 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/mbzpmf483x
title: Sociable Soundscape Testing samples

description: This data set including the edited soundscape samples: foreground human sound/ background human sound/ no human sound/ signal sound.
DOI: 10.17632/p7ftp5wm3h
title: DII images in root tips over time

description: Data comprises timecourse for DII (DEAL) expression for 9 Arabidopsis roots. The raw data is deposited in .lif (Leica) format. This can be opened in ImageJ using the Bioformats plugin. Each file represents data from a single root. Each image within the file represents a timepoint from 0-18h. Each image represents a small z-stack (3 slices) taken from the centre of the root paired with images + 5um and - 5um to this.
DOI: 10.6084/m9.figshare.22798817.v2
title: Social Networks and Reproductive Success in Male Semi?Free Ranging Japanese Macaques (<em>Macaca fuscata</em>)

description: Raw data pertaining to male Japanese macaque affiliative interactions
DOI: 10.17632/y3rfrvj2nf
title: Data for: Determination of radon leakage from sample container for gamma spectrometry measurement of Ra-226

description: This data contain results from HPGe measurement for soil and reference material of IAEA-434 and also from Radon chamber measured by RAD7.
DOI: 10.17632/yd2ptfykc2
title: Rheumatoid arthritis and spondyloarthritis tissue sections

description: Original high resolution Hematoxylin and eosin stained tissue sections from affected Rheumatoid arthritis and spondyloarthritis patients. The sections are overlaid with clusters from heierarchical clustering based on transcriptome profiles collected in spots. Black lines indicate areas with immune cell infiltration annotated manually by an experienced histologist.
DOI: 10.6084/m9.figshare.23634330.v1
title: Supplementary Material for: Preoperative prediction of microvascular invasion with gadoxetic acid-enhanced magnetic resonance imaging in patients with single hepatocellular carcinoma: The implication of surgical decision on the extent of liver resection

description: Introduction: Microvascular invasion (MVI) is one of the most important prognostic factors for hepatocellular carcinoma (HCC) recurrence, but its application in preoperative clinical decisions is limited. This study aimed to identify preoperative predictive factors for MVI in HCC and further evaluate oncologic outcomes of different types and extents of hepatectomy according to stratified risk of MVI. Methods: Patients with surgically resected single HCC (≤5 cm) who underwent preoperative gadoxetic acid-enhanced magnetic resonance imaging (MRI) were included in a single-center retrospective study. Two radiologists reviewed the images with no clinical, pathological, or prognostic information. Significant predictive factors for MVI were identified using logistic regression analysis against pathologic MVI and used to stratify patients. In the subgroup analysis, long-term outcomes of the stratified patients were analyzed using the Kaplan-Meier method with log-rank test and compared between anatomical and non-anatomical or major and minor resection. Results: A total of 408 patients, 318 men and 90 women, with a mean age of 56.7 years were included. Elevated levels of tumor markers (α-FP ≥25 ng/mL and PIVKA-II ≥40 mAU/mL) and three MRI features (tumor size ≥ 3 cm, non-smooth tumor margin, and arterial peritumoral enhancement) were independent predictive factors for MVI. As the MVI risk increased from low (no predictive factor) and intermediate (1–2 factors) to high-risk (3–4 factors), recurrence-free and overall survival of each group significantly decreased (P= 0.001). In the high MVI risk group, 5-year cumulative recurrence rate was significantly lower in patients who underwent major compared to minor hepatectomy (26.6 vs 59.8%, P= 0.027). Conclusion: Tumor markers and MRI features can predict the risk of MVI and prognosis after hepatectomy. Patients with high MVI risk had the worst prognosis among the three groups, and major hepatectomy improved long-term outcomes in these high-risk patients.
DOI: 10.6084/m9.figshare.23737116.v1
title: Murine intestinal organid scEU-seq data - Preprocessed

description: scRNA-seq dataset of murine intestinal organoids metabolically labeled and sequenced with scEU-seq. The data has been preprocessed (filtered, normalized, PCA, neighbors, UMAP). See here for details. <br> Please cite the original publication: https://doi.org/10.1126/science.aax3072
DOI: 10.6084/m9.figshare.8044184.v6
title: A data set of global river networks and corresponding water resources zones divisions

description: river and wrz
DOI: 10.17632/gbdf8fkv89
title: BRAZILIAN SOIL δ13C ISOSCAPE BASED ON MULTIPLE LINEAR REGRESSION ANALYSIS 

description: Carbon stable isotope ratios (δ13C) have been applied in several environmental contexts, such as feeding habits, origin of migratory species, and vegetation distribution patterns. Brazil presents a vast environmental diversity, which enables the development of studies to identify the soil δ13C distribution patterns. This work aimed to identify the environmental variables that influence the soil δ13C and develop a spatial model of Brazilian soil δ13C, based on multiple linear regression analysis. The model used 717 samples at a depth of 0-20 centimeters and a set of climate, soil, and vegetation variables. The model showed a range of soil δ13C values between -30‰ and -13‰, with the highest estimated values in the southeastern regions and the highest estimated values in northwestern Brazil. The results pointed out regional patterns in the spatial distribution of the soil δ13C and the relationships between the environmental variables incorporated in the model and the soil δ13C. Due to the high environmental diversity of Brazil and the local environmental characteristics, some of these variables presented opposite behavior to that reported in previous studies, which makes necessary the development of studies aimed at the better understanding of these relations. Nevertheless, the soil δ13C isoscape model presented a general panorama of the distribution of Brazilian soil δ13C with a more refined level of detail concerning the existing models for the region.
DOI: 10.6084/m9.figshare.19403528.v1
title: Encounter with a selfish virus sabotages its vector to orient towards requisite host plant: A case study with chilli leaf curl virus-whitefly

description: plant virus mediated altered chemoecological behaviour in the vector whiteflies.
DOI: 10.17632/r3hhg98d36
title: Supplementary data for the article: The Calibration of Initial Shocks in Bank Stress Test Scenarios

description: Olivier Darné, Guy Levy-Rueff & Adrian Pop
The Calibration of Initial Shocks in Bank Stress Test Scenarios: An Outlier Detection Based Approach

Documentation concerning the data
The enclosed data files (dlrp_ECMODE.csv & readme.txt) contains all the relevant data used in the implementation of outlier detection algorithms.
The meaning of each series and the way they have been computed are explained in the paper.
DOI: 10.17632/wkjwsdwk66
title: Data from: Risk of Gastroenteritis from Swimming at a Wastewater-Impacted Tropical Beach Varies across Localized Scales

description: This dataset contains measurements of concentrations of MST marker HF183 and fecal indicator microorganisms (fecal coliforms and enterococci). Water samples were collected just outside the river plume in three rivers that impact a Costa Rican beach during the rainy and dry season. Microorganisms were filtered from a 500-mL grab sample onto a 0.45-µm, mixed cellulose ester. Enterococci and fecal coliforms were cultured.HF183 was quantified from nucleic acid using quantitative PCR. We examined microbiological water quality in three rivers that impact a Costa Rican beach.
DOI: 10.6084/m9.figshare.22349377.v1
title: Input data for regression and deep learning approaches

description: This zip file contains all input time-series data needed to run the code for "Virtual gauges: the surprising potential to reconstruct continuous streamflow from strategic measurements" by Vlah et al. 2023. You may also want to download our complete zip of model objects, rather than re-running hundreds of models. Follow the README files in our code on GitHub: https://github.com/vlahm/neon_q_sim.
DOI: 10.6084/m9.figshare.19499297.v1
title: patches and local annotations, slide 138, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.14153372.v1
title: Supplemental Table S1

description: Clinical, biochemical and molecular evaluations of our cohort of patients with 11β-hydroxylase deficiency
DOI: 10.6084/m9.figshare.27942177.v2
title: Are <i>Elaeagnus umbellata </i> invasions limited by microbial mutualists?

description: Mutualistic interactions with soil microbes are a key component of plant invasions. Mutualists such as Rhizobia bacteria often limit invasive plant establishment and performance, but the role of nitrogen-fixing Frankia bacteria in invasions is much less explored. We quantified the net effects of plant-soil feedbacks, including Frankia nodulation, on invasive Elaeagnus umbellata (autumn olive) seedling performance and allocation. The inoculation experiment used soil collected at varying distances from focal shrubs and used live soil and sterilized (autoclaved) soil to separate biotic from abiotic effects. We expected seedling performance would decrease with further distance from shrubs as Frankia abundance and nitrogen inputs decreased. Contrary to expectations, seedling biomass increased with distance from focal shrubs in live soil. The observed distance effects were driven by Frankia colonization as both nodule biomass and nodulation likelihood increased with distance from focal shrubs. Nodule formation appeared beneficial to plant growth, as biomass was correlated with nodule biomass. Seedling performance and allocation did not respond to distance in sterile soil, suggesting abiotic effects play a minimal role in inhibiting nodulation near focal shrubs. These data demonstrate that, while Frankia nodulation positively impacts E. umbellata performance, the abundance of Frankia does not limit E. umbellata establishment at local scales. Future studies should evaluate the specificity of the E. umbellata- Frankia mutualism and the availability of these strains in uninvaded landscapes to understand why these mutualisms do not appear to limit invasion
DOI: 10.17632/bbg7szr6yr
title: Dataset to quantify spillover effects among concurrent green initiatives

description: This dataset encompassing four prominent concurrent green initiatives in both the United States (U.S.) and China, designed to assess and quantify the spillover effects among these initiatives.
DOI: 10.17632/4vnf8rh5gm
title: Manganese steel machine learning

description: We have collected data on the composition, treatment process and properties of Mn steel, and proposed a material design model through machine learning, which is currently being submitted.
DOI: 10.6084/m9.figshare.28248518.v1
title: ETEC detection by TaqMan Array Card in ETVAX

description: Enterotoxigenic Escherichia coli (ETEC) is a leading cause of childhood and travelers’ diarrhea. The vaccine candidate ETVAX encompasses several ETEC colonization factors (CFs) with a hybrid LT (heat-labile toxin)/Cholera toxin B subunit (LCTBA), adjuvanted with a double-mutant LT (dmLT). Stool samples were collected from the participants in OEV123, a Phase 2b randomized, double-blinded, placebo-controlled trial among Finnish travelers to Benin, West Africa. Nucleic acids were extracted using QIAamp Fast DNA Stool mini kit, then tested on a PCR-based customized TaqMan Array Card (TAC) including three ETEC toxin genes (LT and heat-stable toxins, STh and STp) and 18 ETEC CFs.
DOI: 10.6084/m9.figshare.5885233.v1
title: GHWR - Summary - Const Thresh, EHF, ETTCDI, PDF and SHI Methods

description: Annual summary files with detailed information on heatwave frequency, duration, magnitude and amplitude, among others, using Constant Threshold, EHF, ETCCDI, PDF, and SHI methods for defining heatwaves for the entire globe between 1979 and 2017.
DOI: 10.17632/5wsbncgvj5
title: miRNA microarray and miRNA target prediction data

description: Supplementary data to Alexanova et al (2022)
DOI: 10.17632/rvwrf2trc8
title: LINF_130022400

description: Protein Associated with Differentiation 1 | PAD1; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xfgycsgxt4
title: Dataset. Hou et al. A fish tale A century of museum specimens reveal increasing microplastic concentrations in freshwater fish.

description: Dataset to accompany research article Hou et al. Ecological Applications. A century of museum specimens reveal increasing microplastic concentrations in freshwater fish.
DOI: 10.17632/8jgb8hs5br
title: Data for: Conserving unprotected important coastal habitats in the Yellow Sea: shorebird occurrence, distribution and food resources at Lianyungang
DOI: 10.4121/20152226.v1
title: Data underlying the research project: Genotype-specific reference interval of haptoglobin tests on the BN II System

description: This study was designed to investigate the reference intervals of serum HP on the BN II System for different genotype individuals. The data submitted are the basic conditions and clinical laboratory test data of 1229 healthy people, including Gender, Age, white blood cell (WBC), hemoglobin (HGB), alanine transaminase (ALT), glucose (GLU), cholesterol (CHO), Triglyceride (TG), low-density lipoprotein (LDL), haptoglobin concentration and genotype. Before blood collection, individuals were instructed to maintain a normal diet within 3 days and fast overnight (&gt;8 hours). The exclusion criteria were set as follows: WBC&gt;9.5 G/L, HGB&lt;90 g/L, ALT&gt;50 U/L, CHO≥5.69 mmol/L, TG≥2.26 mmol/L, LDL≥4.14 mmol/L, GLU&gt;6.1 mmol/L. Serum HP concentrations were measured by BN II System (Siemens AG, Munich, Germany). WBC, HB levels were determined by XN-2000 (Sysmex, Kobe, Japan). ALT, CHO, TG, LDL, GLU measurements were determined by AU 5800 (Beckman Coulter, Brea, USA). HP genotyping was determined by gel electrophoresis method and real-time PCR method.
DOI: 10.6084/m9.figshare.24781590.v1
title: GSE205506.rds

description: single cell data download from GEO Accession viewer (nih.gov)combind all cases to a filedata size of 25036x285112
DOI: 10.17632/4nt4t3zs8f
title: A Virtual Reality Paradigm to assess Episodic Memory: Six different Maps and Schemes for Behavioral Assessment.

description: In this data-set, we provide a virtual reality task based on Unity3D/C# to assess episodic memory in a real-world miming scenario -i.e. walking through a virtual town. Participants may be instructed to walk through the virtual town in a self-paced manner (using arrow buttons) and to memorize items placed along the track through the map. After completing the track, participants may be instructed to recollect the items. The data-set includes an evaluation scheme to assess the participants performance based on five different scales: 1) What (the item i.e. "horse"), Detail (i.e. " was brown"), Where (Was the item located in the beginning/middle/end of the track?), Allocentrism ( attention to other items nearby: "Right beside the horse there was a man standing"), Egocentrism (orientation on the track: "Did you turn left or right after passing the item?) . Includes: 1. A training town for the instruction of the task and getting used to the navigation. 2. Six different virtual towns. 3. Evaluation schemes for behavioral assessment.
DOI: 10.17632/9hjfrjw76x
title: One-step preparation of Co2V2O7: synthesis and application as Fenton-like catalyst in gas diffusion electrode

description: In this dataset it is possible to find the raw data of the research on the synthesis and use of cobalt vanadate as a catalyst in gas diffusion electrodes. The files are separated by the figures of the published article
DOI: 10.15468/dl.t6pyrp
title: Occurrence Download

description: A dataset containing 5829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Phoxinus phoxinus (Linnaeus, 1758)"
 ]
}

 The dataset includes 5829 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009196-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5683846.v2
title: Data used for the analysis of change in weekly NDVI around arrival and departure from Intra-tropical movements as a beneficial strategy for Palearctic migratory birds.

description: ESM S3. Data used for the analysis of change in weekly NDVI during the two weeks around arrival at and around departure from individual sites. See ESM S1 for data description and R code.
DOI: 10.17632/t8x96g88p3
title: Ultimate_Analysis

description: This database studies the performance inconsistency on the biomass HHV ultimate analysis. The research null hypothesis is the consistency in the rank of a biomass HHV model. Fifteen biomass models are trained and tested in four datasets. In each dataset, the rank invariability of these 15 models indicates the performance consistency. 

The database includes the datasets and source codes to analyze the performance consistency of the biomass HHV. These datasets are stored in tabular on an excel workbook. The source codes are the biomass HHV machine learning model through the MATLAB Objected Orient Program (OOP). These machine learning models consist of eight regressions, four supervised learnings, and three neural networks.

An excel workbook, "BiomassDataSetUltimate.xlsx," collects the research datasets in six worksheets. The first worksheet, "Ultimate," contains 908 HHV data from 20 pieces of literature. The names of the worksheet column indicate the elements of the ultimate analysis on a % dry basis. The HHV column refers to the higher heating value in MJ/kg. The following worksheet, "Full Residuals," backups the model testing's residuals based on the 20-fold cross-validations. The article (Kijkarncharoensin & Innet, 2021) verifies the performance consistency through these residuals. The other worksheets present the literature datasets implemented to train and test the model performance in many pieces of literature.

A file named "SourceCodeUltimate.rar" collects the MATLAB machine learning models implemented in the article. The list of the folders in this file is the class structure of the machine learning models. These classes extend the features of the original MATLAB's Statistics and Machine Learning Toolbox to support, e.g., the k-fold cross-validation. The MATLAB script, name "runStudyUltimate.m," is the article's main program to analyze the performance consistency of the biomass HHV model through the ultimate analysis. The script instantly loads the datasets from the excel workbook and automatically fits the biomass model through the OOP classes.

The first section of the MATLAB script generates the most accurate model by optimizing the model's higher parameters. It takes a few hours for the first run to train the machine learning model via the trial and error process. The trained models can be saved in MATLAB .mat file and loaded back to the MATLAB workspace. The remaining script, separated by the script section break, performs the residual analysis to inspect the performance consistency. Furthermore, the figure of the biomass data in the 3D scatter plot, and the box plots of the prediction residuals are exhibited. Finally, the interpretations of these results are examined in the author's article.

Reference :
Kijkarncharoensin, A., & Innet, S. (2022). Performance inconsistency of the Biomass Higher Heating Value (HHV) Models derived from Ultimate Analysis [Manuscript in preparation]. University of the Thai Chamber of Commerce.
DOI: 10.17632/wzckp4hw4t
title: Data for: Development of RTE solver for radiative transfer in absorbing-emitting medium using finite volume based CFD library OpenFOAM