cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3473214
title: Uncovering dryland woody dynamics using optical, microwave, and field data: Prolonged above-average rainfall surprisingly contributes to woody plant die-off in the western Sahel

description: Data accompanying the paper: Bernardino, P., Brandt, M., De Keersmaecker, W., Horion, S., Fensholt, R., Storms, I., Wigneron, JP., Verbesselt, J. and Somers, B. 2019. Uncovering dryland woody dynamics using optical, microwave, and field data: Prolonged above-average rainfall surprisingly contributes to woody plant die-off in the western Sahel.
DOI: 10.18716/nmrshiftdb2/2519
title: NMR data for 2,3,4-Trimethyl-5,7-dihydroxy-2,3-dihydrobenzofuran
DOI: 10.17632/4ggjzvjhy2.1
title: Data for: The Impact of Provider Education on Pediatric Palliative Care Referral

description: The aim of this project was to implement an effective educational initiative using standardized guidelines to increase provider knowledge of patients who qualify for palliative care referral, while subsequently impacting referral rates. Educational sessions were developed outlining referral recommendations from the AAP, National Hospice and Palliative Care Organization (NHPCO), and those included in the institutional policy. Presurveys and postsurveys validated by two clinical experts in the field were administered to participants at the time of the intervention. Referral rates for the organization were also collected for two months prior to the intervention, and two months following the intervention.
DOI: 10.25345/c5t95z
title: MassIVE MSV000084417 - MudPIT analyses of the proteins co-purified with FLAG-mortalin/HSPA9 from human HEK293 cells
title: Protein Complexes Purification - HEK296T cells were transiently-transfected with FLAG-mortalin/HSPA9, both wild-type (WT) and a form derived from N-Ethyl-N-Nitrosourea (ENU) mutagenesis. Cells transfected with empty FLAG vector served as negative control. Protein complexes containing HSPA9 were purified from whole cell extracts via their FLAG epitope tag. Eight biological replicates of FLAG-Mortalin-WT, three of FLAG-Mortalin-ENU, and 13 negative controls were prepared and analyzed by liquid chromatography coupled to tandem mass spectrometry. Multidimensional Protein Identification Technology - TCA-precipitated protein pellets were solubilized in 100 mM Tris-HCl pH 8.5 and 8 M urea, followed by addition of TCEP (Tris(2-carboxyethyl)phosphine hydrochloride; Pierce) and CAM (chloroacetamide; Sigma) to final concentrations of 5 mM and 10 mM, respectively. Proteins were digested with Endoproteinase Lys-C at 1:100 w/w (Roche) at 37oC overnight. The samples were brought to a final concentration of 2 M urea and 2 mM CaCl2 and a second digestion was performed overnight at 37oC using trypsin (Promega) at 1:100 w/w. The reactions were stopped using formic acid (5% final). The samples were loaded on a three-phase fused-silica micro-capillary column and placed in-line with a linear ion trap mass spectrometer (LTQ, Thermo Scientific), coupled with a Quaternary Agilent 1100 Series HPLC system. A fully automated 10-step chromatography run was carried out. Each full MS scan (400-1600 m/z) was followed by five data-dependent MS/MS scans. The number of the micro scans was set to 1 both for MS and MS/MS. The settings were as follows: repeat count 2; repeat duration 30 s; exclusion list size 500 and exclusion duration 120 s, while the minimum signal threshold was set to 100. MS Data Processing - The MS/MS data set was searched using ProLuCID (v. 1.3.3) against a database consisting of 36674 Homo sapiens NR proteins (NCBI -released 2018-03-30), 426 usual contaminants, and, to estimate false discovery rates (FDRs), 37100 randomized amino acid sequences derived from each NR protein entry. To account for alkylation by CAM, 57 Da were added statically to the cysteine residues. To account for the oxidation of methionine to methionine sulfoxide, 16 Da were added as a differential modification to the methionine residue. Peptide/spectrum matches were sorted and selected to an FDR less than 5% at the peptide and protein levels, using DTASelect in combination with swallow, an in-house software. mzid files were created with the dtaselect2mzid data file converter.
DOI: 10.5258/soton/d1086
title: Dataset for: Chemical knockdown of Dnmt1 by 5-Azacitidine induced degradation

description: Assigned DOI: https://doi.org/10.5258/SOTON/D1086Dataset supports the thesis 'Proteomic analysis of Wntand epigenetic regulatory protein networks in colorectal cancer' chapter 'Chemical knockdown of Dnmt1 by 5-Azacitidine induced degradation'.
DOI: 10.5281/zenodo.3473205
title: Toward Non-Corrosion and Highly Sustainable Structural Members by Using Ultra-High-Performance Materials for Transportation Infrastructure

description: Corresponding data set for Tran-SET Project No. 18STUTA01. Abstract of the final report is stated below for reference: "This research focused on investigating a highly sustainable and efficient reinforced concrete structural member for future infrastructure by utilizing emerging high-performance materials. These materials include ultra-high-performance fiber-reinforced concrete (UHP-FRC) and corrosion-resistant high-strength fiber-reinforced polymer (FRP) bars. Four reduced scale UHP-FRC specimens were tested under large displacement reversals to prove the proposed new ductile-concrete strong-reinforcement (DCSR) design concept by fully utilizing these ultra-high-performance materials. Micro steel fibers were incorporated into three specimens and ultra-high molecular weight polyethylene fibers were blended into the fourth specimen. One specimen with ASTM A1035 MMFX high-strength steel rebars, one with high-strength glass fiber reinforced polymer (GFRP) rebars, and two with high-strength basalt fiber reinforced plastic (BFRP) rebars were tested. The beams had a reinforcement ratio of 14% to 15%. The test results concluded that the beams could sustain very large cyclic drift ratios without major damage in the UHP-FRC material, which provided ample shear strength and confinement to the reinforcement throughout the testing. Even with the high amount of reinforcement, UHP-FRC’s superior ductility provided a very stable cyclic behavior up to some very large drift ratios. Because of the DCSR design, all specimens also exhibited a self-centering ability, which considerably reduces the residual displacement after being subjected to large displacement reversals. The test results also show that the high damage-resistance and self-centering characteristics of the proposed UHP-FRC flexural members can provide excellent resilience for building structures."
description: Tran-SET Project No. 18STUTA01
DOI: 10.5281/zenodo.3473206
title: Toward Non-Corrosion and Highly Sustainable Structural Members by Using Ultra-High-Performance Materials for Transportation Infrastructure

description: Corresponding data set for Tran-SET Project No. 18STUTA01. Abstract of the final report is stated below for reference: "This research focused on investigating a highly sustainable and efficient reinforced concrete structural member for future infrastructure by utilizing emerging high-performance materials. These materials include ultra-high-performance fiber-reinforced concrete (UHP-FRC) and corrosion-resistant high-strength fiber-reinforced polymer (FRP) bars. Four reduced scale UHP-FRC specimens were tested under large displacement reversals to prove the proposed new ductile-concrete strong-reinforcement (DCSR) design concept by fully utilizing these ultra-high-performance materials. Micro steel fibers were incorporated into three specimens and ultra-high molecular weight polyethylene fibers were blended into the fourth specimen. One specimen with ASTM A1035 MMFX high-strength steel rebars, one with high-strength glass fiber reinforced polymer (GFRP) rebars, and two with high-strength basalt fiber reinforced plastic (BFRP) rebars were tested. The beams had a reinforcement ratio of 14% to 15%. The test results concluded that the beams could sustain very large cyclic drift ratios without major damage in the UHP-FRC material, which provided ample shear strength and confinement to the reinforcement throughout the testing. Even with the high amount of reinforcement, UHP-FRC’s superior ductility provided a very stable cyclic behavior up to some very large drift ratios. Because of the DCSR design, all specimens also exhibited a self-centering ability, which considerably reduces the residual displacement after being subjected to large displacement reversals. The test results also show that the high damage-resistance and self-centering characteristics of the proposed UHP-FRC flexural members can provide excellent resilience for building structures."
description: Tran-SET Project No. 18STUTA01
DOI: 10.5519/qd.9u3h4mhp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.dv4iy3it
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.mbhxtqg1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.17632/z77czyyyk8.1
title: Experimental code based on MATLAB and PYTHON

description: The experimental code consists data processing and function realization, (1) Data processing. The code of state parameters processing is used for the selection of state parameters standardization of sample processing. The code of label initialization for regression is applied to generate a quantitative degradation value for supervised fine-tuning for the model of regression analysis. The code of PCA use the principal component analysis method to preliminarily evaluate the samples, and roughly distinguish the samples according to the eigenvalues, so as to obtain enough sample labels for reverse fine-tuning of deep learning model. (2) Function realization. The code of regression analysis contains the models of DBN and BP and their regression analysis results. The code of fault classification is used to compare the diagnostic accuracy of DBN, BP and SVM. The code of time series prediction includes the model of LSTM, RNN and GUR. All the related prediction and classification results are also given in the folder.
DOI: 10.5519/qd.59engetj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.18716/nmrshiftdb2/2520
title: NMR data for Horiolide
DOI: 10.7910/dvn/gyeg59/k1nnec
title: Sustainable_food_systems_global_index.tab

description: :unav
DOI: 10.6073/pasta/68ac4eb7446648b731e83ce53385cbef
title: Context dependency of effect of fungal connections between plants and biocrusts

description: Conceptual context: Species interactions may couple the resource dynamics of different primary producers and may enhance productivity by reducing loss from the system. In low-resource systems, this biotic control may be especially important for maintaining productivity. In drylands, the activities of vascular plants and biological soil crusts can be decoupled in space because biocrusts grow on the soil surface but plant roots are underground, and decoupled in time due to biocrusts activating with smaller precipitation events than plants. Soil fungi are hypothesized to functionally couple the plants and biocrusts by transporting nutrients. We studied whether disrupting fungi between biocrusts and plants reduces nitrogen transfer and retention and decreases primary production as predicted by the fungal loop hypothesis. Additionally, we compared varying precipitation regimes that can drive different timing and depth of biological activities. Methodological approach: We used field mesocosms in which the potential for fungal connections between biocrusts and roots remained intact or were impeded by mesh. We imposed a precipitation regime of small, frequent or large, infrequent rain events. We used 15N to track fungal-mediated nitrogen (N) transfer. We quantified microbial carbon use efficiency and plant and biocrust production and N content.
DOI: 10.18716/nmrshiftdb2/2523
title: NMR data for 3,15-Dihydroxy-ent-labd-7-en-17-oic acid
DOI: 10.5258/soton/d1085
title: Dataset for: Proteomic analysis of Dnmt1 hypomorphic colorectal cancer cells reveals activation of markers of epithelial-mesenchymal transition and re-localization of Beta-Catenin

description: Dataset supports the thesis 'Proteomic analysis of Wntand epigenetic regulatory protein networks in colorectal cancer' chapter 'Proteomic analysis of Dnmt1 hypomorphiccolorectal cancer cells reveals activation of markers of epithelial-mesenchymal transition and re-localization of Beta-Catenin'.
DOI: 10.18716/nmrshiftdb2/2525
title: NMR data for 4-nor-18-homo-ent-kauran-4(18)-en-15,16,17-triol-3,19-olide
DOI: 10.17632/yjrn9c2pvy.1
title: Data for: Texture diversity in melon (Cucumis melo L.): Sensory and physical assessments

description: Raw data on melon quality
DOI: 10.5281/zenodo.3473074
title: Development of Geopolymer-Based Cement and Soil Stabilizers for Transportation Infrastructure

description: Corresponding data set for Tran-SET Project No. 18CTAM03. Abstract of the final report is stated below for reference: "Geopolymer Cement (GPC) has drawn much attention in the recent years as an alternative to Ordinary Portland Cement (OPC) for soil stabilization, pavements, bridges and other transportation structures due to their good mechanical properties in comparison to OPC. In addition, GPC can be processed at room temperatures from aqueous solutions of waste materials (e.g. fly ash) or abundant natural sources (e.g. clay), thereby significantly reducing CO2 production associated with processing of OPC. As such, GPC proves to be a more sustainable and environmentally friendly alternative than OPC. This research explores methods to develop GPC with desired properties and evaluate their durability characteristics as part of their long-term performance based on real service conditions when exposed to significant water intake during flooding or torrential rainfall. Teams from Texas A&M University (TAMU) and University of Texas at Arlington (UTA) collaborated in this study to understand GPC, propose different methods to synthesize GPC, and to effectively synthesize a GPC composition."
description: Tran-SET Project No. 18CTAM03
DOI: 10.5281/zenodo.3473075
title: Development of Geopolymer-Based Cement and Soil Stabilizers for Transportation Infrastructure

description: Corresponding data set for Tran-SET Project No. 18CTAM03. Abstract of the final report is stated below for reference: "Geopolymer Cement (GPC) has drawn much attention in the recent years as an alternative to Ordinary Portland Cement (OPC) for soil stabilization, pavements, bridges and other transportation structures due to their good mechanical properties in comparison to OPC. In addition, GPC can be processed at room temperatures from aqueous solutions of waste materials (e.g. fly ash) or abundant natural sources (e.g. clay), thereby significantly reducing CO2 production associated with processing of OPC. As such, GPC proves to be a more sustainable and environmentally friendly alternative than OPC. This research explores methods to develop GPC with desired properties and evaluate their durability characteristics as part of their long-term performance based on real service conditions when exposed to significant water intake during flooding or torrential rainfall. Teams from Texas A&M University (TAMU) and University of Texas at Arlington (UTA) collaborated in this study to understand GPC, propose different methods to synthesize GPC, and to effectively synthesize a GPC composition."
description: Tran-SET Project No. 18CTAM03
DOI: 10.5281/zenodo.3473072
title: Public opinion and war casualties

description: Dataset associated with "Public Opinion and War Casualties".
DOI: 10.5281/zenodo.3473073
title: Public opinion and war casualties

description: Dataset associated with "Public Opinion and War Casualties".
DOI: 10.18716/nmrshiftdb2/2524
title: NMR data for Globulixanthone A
DOI: 10.5519/qd.58l0m7pt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (268 records)
DOI: 10.18716/nmrshiftdb2/2521
title: NMR data for 1,3,8-trihydroxy-6-methoxy-anthraquinone; Lunatin
DOI: 10.5281/zenodo.3473084
title: Development of Metals Corrosion Maps of Arkansas and Maintenance of Cross-Drains

description: Corresponding data set for Tran-SET Project No. 18GTASU01. Abstract of the final report is stated below for reference: "Corrosion potential of metallic structures in alluvial soils is governed by chemical and electromagnetic properties of the soils. Geotechnical engineers are generally more concerned about different types of soils and their physical and mechanical properties than the chemical aspects. The main objective of this study is to analyze the geotechnical, electrochemical and electromagnetic properties of soils in Arkansas. Important parameters (e.g., soil resistivity) related to corrosion potential of metal culverts have been predicted through neural network (NN) models. The developed NN models have been trained and verified by using laboratory test results of soil samples collected from Arkansas Department of Transportation (ARDOT), and survey data obtained from the United States Department of Agriculture (USDA) and Arkansas Department of Environmental Quality (ADEQ). Finally, the Geographic Information System (GIS) based corrosion risk maps of three different types of metal pipes have been developed based on the available soil properties, metal properties, and water quality data. The developed maps will help ARDOT engineers to assess corrosion potential of metal pipes prior to the new construction and repair projects and use proper culvert and cross drain materials."
description: Tran-SET Project No. 18GTASU01
DOI: 10.5281/zenodo.3473085
title: Development of Metals Corrosion Maps of Arkansas and Maintenance of Cross-Drains

description: Corresponding data set for Tran-SET Project No. 18GTASU01. Abstract of the final report is stated below for reference: "Corrosion potential of metallic structures in alluvial soils is governed by chemical and electromagnetic properties of the soils. Geotechnical engineers are generally more concerned about different types of soils and their physical and mechanical properties than the chemical aspects. The main objective of this study is to analyze the geotechnical, electrochemical and electromagnetic properties of soils in Arkansas. Important parameters (e.g., soil resistivity) related to corrosion potential of metal culverts have been predicted through neural network (NN) models. The developed NN models have been trained and verified by using laboratory test results of soil samples collected from Arkansas Department of Transportation (ARDOT), and survey data obtained from the United States Department of Agriculture (USDA) and Arkansas Department of Environmental Quality (ADEQ). Finally, the Geographic Information System (GIS) based corrosion risk maps of three different types of metal pipes have been developed based on the available soil properties, metal properties, and water quality data. The developed maps will help ARDOT engineers to assess corrosion potential of metal pipes prior to the new construction and repair projects and use proper culvert and cross drain materials."
description: Tran-SET Project No. 18GTASU01
DOI: 10.18716/nmrshiftdb2/2530
title: NMR data for Jiadifenin
DOI: 10.5281/zenodo.3473220
title: jessica-tomaszewski/WRF-WFP-sensitivity v1.3

description: User input data and parsed data necessary to recreate figures and analysis from Geoscientific Model Development article "Simulated wind farm wake sensitivity to configuration choices in the Weather Research and Forecasting model version 3.8.1"
DOI: 10.5281/zenodo.3473092
title: Integrated Full-Scale Physical Experiments and Numerical Modeling of the Performance and Rehabilitation of Highway Embankments

description: Corresponding data set for Tran-SET Project No. 18GTLSU06. Abstract of the final report is stated below for reference: "The study aimed to fundamentally understand how soil strength and hydraulic properties are impacted by recurring cycles of wetting and drying induced by climate variability, with the practical implication of forecasting the stability of highway embankment slopes. The review of literature on the effects of long-term cyclic wetting-drying phases on hydro-mechanical properties of clayey soils suggests that only a few cycles of wetting and drying can impact the strength and hydraulic conductivity, where the latter can increase several orders of magnitude. Laboratory model-scale experiments of Louisiana and Texas soils are still ongoing and will relate the laboratory test results to weathering cycles by accounting for parameters such as rainfall intensity and duration, evapotranspiration, temperature, and relative humidity. The objective of the laboratory testing was to determine the strength and unsaturated soil properties of samples collected from laboratory model-scale experiments and to investigate the subsequent changes in the hydro-mechanical properties of those clayey soils. For example, shrinkage test results provided a measure of the propensity and extent of strength loss incurred by a soil specimen when exposed to weathering cycles. Numerical modeling of highway embankments with material properties and test results obtained from lab testing were used to predict the factor of safety for an embankment in Texas."
description: Tran-SET Project No. 18GTLSU06
DOI: 10.5281/zenodo.3473093
title: Integrated Full-Scale Physical Experiments and Numerical Modeling of the Performance and Rehabilitation of Highway Embankments

description: Corresponding data set for Tran-SET Project No. 18GTLSU06. Abstract of the final report is stated below for reference: "The study aimed to fundamentally understand how soil strength and hydraulic properties are impacted by recurring cycles of wetting and drying induced by climate variability, with the practical implication of forecasting the stability of highway embankment slopes. The review of literature on the effects of long-term cyclic wetting-drying phases on hydro-mechanical properties of clayey soils suggests that only a few cycles of wetting and drying can impact the strength and hydraulic conductivity, where the latter can increase several orders of magnitude. Laboratory model-scale experiments of Louisiana and Texas soils are still ongoing and will relate the laboratory test results to weathering cycles by accounting for parameters such as rainfall intensity and duration, evapotranspiration, temperature, and relative humidity. The objective of the laboratory testing was to determine the strength and unsaturated soil properties of samples collected from laboratory model-scale experiments and to investigate the subsequent changes in the hydro-mechanical properties of those clayey soils. For example, shrinkage test results provided a measure of the propensity and extent of strength loss incurred by a soil specimen when exposed to weathering cycles. Numerical modeling of highway embankments with material properties and test results obtained from lab testing were used to predict the factor of safety for an embankment in Texas."
description: Tran-SET Project No. 18GTLSU06
DOI: 10.18716/nmrshiftdb2/2527
title: NMR data for Bastadin-21
DOI: 10.18716/nmrshiftdb2/2528
title: NMR data for Thorectandrol C
DOI: 10.5281/zenodo.3445469
title: Datasets for Age, Gender, and International Author Networks in the Earth and Space Sciences: Implications for Addressing Implicit Bias

description: These files provide supplemental information and tabular data for figures in Hanson, Wooden, Lerback: Age, Gender, and International Author Networks in the Earth and Space Sciences: Implications for Addressing Implicit Bias, Submitted to Earth and Space Science.