cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ptm76m8s7n.1
title: Data for: Evaluation of pain, functional capacity and kinesiophobia in women in the chronic stage of chikungunya virus infection: a cross-sectional study in northeastern Brazil

description: Study database
DOI: 10.17632/tj9hgksyvw.1
title: Data for: Contribution of externally bonded FRP shear reinforcements to the shear strength of a strengthened RC beam

description: Shear strength contributions, Crack patterns and Strains in transverse reinforcements
DOI: 10.17632/yr8gccz2sn.1
title: Data for: Effect of sodium dichloroacetate on apoptotic gene expression in human leukemia cell lines

description: Supplementary material 1 and 2 show respectively positive and negative correlations between changes of gene expression generated using Spearman’s analysis for all 4 cell lines after 24, 48 and 72 hours of exposure of cells to DCA. Supplementary material 3 shows log RQ values for all examined genes in four cell lines after 24, 48 and 72 hours. RQ values were used in statistical analysis. Supplementary material 4 shows a profile of gene expression changes for CCRF/CEM cell line after 24-hour exposure to IC50.
DOI: 10.17632/zs38y6ydd2.1
title: Data for: Femtosecond pulse radiolysis with terahertz probe pulses

description: Accelerator design and particle tracking results for a bunch charge of 1 nC.
DOI: 10.5061/dryad.2jh157f/1
title: Table e-1. Baseline speech/language characteristics per patient
DOI: 10.5061/dryad.43j74d0/1
title: trap data file (tdf)

description: Comma separated file with header in first line. Information is on Spatial-Capture-Recaptures sampling plots. Each plot is 20mx20m. Each plot was visited once per week (=occasion) during three weeks. Plots were cleaned of feces prior data collecttion. Fecal samples were taken and analysed. File contains an identifier (ID) for each trap, its spatial location (X and Y; unit in meter) and whether it was operational (1) or not (0) during each of three occasions (occ1, occ2, occ3).
DOI: 10.5061/dryad.43j74d0/2
title: encounter data file (edf)

description: Comma separated file with header in first line. File contains spatial capture recapture data on individuals which were identified using DNA extracted from fecal pellets sampled in plots (see tdf file) for which 12-14 microsatellite markers could be amplified. Each individual is a unique genotype based on these markers. The information contains Session (always 1), identifier for each individual (ID), during which week it was encountered (occasion), and in which sample plot (TrapID; coded as in the tdf file), as well as the sex of the individual (Sex; F-female; M-male)
DOI: 10.5061/dryad.43j74d0/3
title: Script in program R

description: R script to conduct spatial capture recapture analyses as well as the simulation reported in our paper
DOI: 10.5061/dryad.43vh49k/4
title: Luminosity of two different species of Columbicola.

description: Luminosity of lice (Columbicola spp.) from a dark pigeon species (Petrophassa rufipennis) and light pigeon species (Ducula bicolor).  See Fig. 4 of associated paper.
DOI: 10.5061/dryad.457tt13/1
title: Roth and Krochmal M1 data for Dryad
DOI: 10.5061/dryad.55hr85m/1
title: Supplemental Information

description: Supplemental files associated with manuscript
DOI: 10.5061/dryad.5ht0853/1
title: Transgenerational effects of ungulates and pre-dispersal seed predators on Moricandia moricandioides

description: Transgenerational effects of ungulates and seed predators on Moricandia moricandioides' seed quality and seedling emergence, performance and resistance.
DOI: 10.5061/dryad.6gd8hb5/1
title: Sambhu et al. data

description: Microsoft Excel was used to create this data file, which contains abundance data for butterflies sampled from June 2016 to May 2017 in three locations along the Wet Tropics bioregion of Queensland, Australia, as part of Hemchandranauth Sambhu's Ph.D. research project. The file also contains a key sheet with details of each code used, and formatted data for NMDS analysis.
DOI: 10.5061/dryad.7g2g68d/1
title: Dog_Wolves_Genotypes

description: Genotypes of dogs (N=68) and wolves (N=115) for 11 microsatellite loci
DOI: 10.5061/dryad.7pm1470/1
title: Body temperature data on great- and blue tits

description: Field data on body temperature in great- and blue tits together with all parameters used in the analyses. Sheet 1: great tit data, Sheet 2: blue tit data, Sheet 3: metadata, description of column headings
DOI: 10.5061/dryad.801r9q8/1
title: Average_plant_data_set

description: Average number of plants in 10 m x 10 m cells in prairie and oldfield habitat over time (see README for details).
DOI: 10.5061/dryad.801r9q8/2
title: Prairie_local_data_set

description: Data on individual 10 m x 10 m plots in prairie (see README for details)
DOI: 10.5061/dryad.801r9q8/3
title: Oldfield_local_data_set

description: Data on individual 10 m x 10 m plots in the oldfield (see README for details)
DOI: 10.5061/dryad.801r9q8/4
title: ROAPS

description: Data organized for Rank occupancy-abundance profiles (see README for details).
DOI: 10.5061/dryad.838v1j5/1
title: Denisetal_dataset

description: Trait description and regional distribution for 1,484 reef fish species around Taiwan
DOI: 10.5061/dryad.838v1j5/2
title: Denisetal_R_main_script

description: R script for the main analysis
DOI: 10.5061/dryad.838v1j5/3
title: Denisetal_R_sensitivity_script

description: R script for the sensitivity analysis
DOI: 10.5061/dryad.9rk5f69/1
title: CarterWilsonMooreRoyle_IGEs_Beetles_Ecology&Evolution_Data

description: Dataset
DOI: 10.5061/dryad.9rk5f69/2
title: CarterWilsonMooreRoyle_IGEs_Beetles_Ecology&Evolution_Pedigree

description: Pedigree to accompany dataset showing focal animal IDs and IDs of focal animal sires and dams.
DOI: 10.5061/dryad.bd10668/1
title: Henriksen_et_al_dibothriocephalus_data

description: Data used to produce figure 1 and 2 in manuscript.
DOI: 10.5061/dryad.bd10668/2
title: Henriksen_et_al_individual_fish_data

description: Data used for GLS and logistic regression analysis.
DOI: 10.5061/dryad.d6s5h2d/1
title: Buffa_et_al_character_taxon_matrix

description: Character-taxon matrix of metoposauroids
DOI: 10.5061/dryad.d6s5h2d/2
title: Buffa_et_al_AppendixS1

description: Appendix S1. Description of characters used in phylogenetic analysis.
DOI: 10.5061/dryad.d6s5h2d/3
title: Buffa_et_al_AppendixS2

description: Appendix S2. Character states for each taxon.
DOI: 10.5061/dryad.d6s5h2d/4
title: Buffa_et_al_AppendixS3

description: Appendix S3. List of nodes returned by phylogenetic analysis with ambiguous and unambiguous synapomorphies.
DOI: 10.5061/dryad.d6s5h2d/5
title: Buffa_et_al_figS1

description: FIG. S1. Character 2: Shape of orbits. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/6
title: Buffa_et_al_figS2

description: FIG. S2. Character 7: Lacrimal-nasal suture. All character states are represented. Lacrimal in light gray, nasal in dark gray.
DOI: 10.5061/dryad.d6s5h2d/7
title: Buffa_et_al_figS3

description: FIG. S3. Character 8: Lacrimal shape. All character states are represented. Lacrimal in light gray.
DOI: 10.5061/dryad.d6s5h2d/8
title: Buffa_et_al_figS4

description: FIG. S4. Character 13: Postfrontal contribution to orbital margin. All character states are represented. Postfrontal in light gray.
DOI: 10.5061/dryad.ft4sn88.1/26.1
title: Dryad_Supplementary_File_26_BAMM_run_info_outfile

description: Dryad_Supplementary_File_26_BAMM_run_info_outfile
DOI: 10.5061/dryad.ft4sn88.1/27.1
title: Dryad_Supplementary_File_27_Rsave_file_containing_results_of_correlated_trait_evolution

description: Dryad_Supplementary_File_27_Rsave_file_containing_results_of_correlated_trait_evolution
DOI: 10.5061/dryad.h00nk10/1
title: Environmental variables and Platycercus elegans plumage coloration

description: Dataset containing 10 environmental variables from 358 grid cells used for analyses of plumage color variation in Platycercus elegans across its distribution in southeastern Australia. Four P. elegans plumage coloration groups were used: 1) YR, 2) AR, 3) WS and 4) CR.
DOI: 10.5061/dryad.h00nk10/2
title: P elegans sites with 3 environmental variables

description: Dataset with 3 environmental variables from 33 sites across the distribution of Platycercus elegans.
DOI: 10.5061/dryad.h00nk10/3
title: P elegans reflectance spectra leaves

description: Dataset containing reflectance spectra of leaves (between 300 and 690nm and divided into 120 bins of 10nm)  measured from dominant trees in the habitat of the four P. elegans plumage coloration groups (YR, AR, WS, CR) at three different sites per group.
DOI: 10.5061/dryad.h00nk10/4
title: P elegans reflectance spectra sites and leaves

description: Dataset containing measurements of MODIS band 1 taken over three different scales (500m, 5000m and 10000m) and measurements of overall reflectance and reflectance between 620-670nm of leaves from dominant trees in the habitat of P. elegans.
DOI: 10.5061/dryad.j51d02h/1
title: Supplementary Table 1
DOI: 10.5061/dryad.k5mp137/6
title: Fidino_MEE

description: See README for description of contents.
DOI: 10.5061/dryad.kd1qt0p.2
title: Data from: High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine
DOI: 10.5061/dryad.kd1qt0p.2/1.2
title: Figure 2 - Source Data 1

description: This zip archive contains the original z-stack used for Figure 2, panels A-C. It is provided as a TIF file, which is readable by FIJI. All imaging parameters are included in the image metadata.
DOI: 10.5061/dryad.kd1qt0p.2/2.2
title: Figure 2 - Source Data 2

description: This zip archive contains the original z-stack used for Figure 2, panel D. It is provided as a TIF file, which is readable by FIJI. All imaging parameters are included in the image metadata.
DOI: 10.5061/dryad.kd1qt0p.2/3.2
title: Figure 2 - Source Data 3

description: This zip archive contains the original z-stack used for Figure 2, panel E. It is provided as a TIF file, which is readable by FIJI. All imaging parameters are included in the image metadata.
DOI: 10.5061/dryad.kd1qt0p.2/4.2
title: Figure 2 - Source Data 4

description: This zip archive contains the original z-stacks used for Figure 2, panels F-G. These are provided as TIF files, which are readable by FIJI. All imaging parameters are included in the image metadata. They are labeled by “Group#” (indicating which CDF they below to in the figure) and “Trial#” if multiple technical replicates were done for a given sample from a Group. The control done in Hanks’ Balanced Salt Solution (HBSS) is labeled as “HBSS”. 

Additionally, this file contains .csv files of all the statistics on particle sizes collected by the ImageJ macro. These are labeled in the format “Group#_trial#_automated_counting_statistics”. It also contains a .csv file of the particle # IDs of the singlet particles that were used to get the average singlet size, which was then used to normalize the ECDFs (as explained in detail in Materials and Methods). These are labeled in the format “Group#_trial#_singlet_IDs”. These .csv files were used in combination with the jupyter notebooks (also provided in this submission) to generate Figure 2, panels F-G. If multiple technical replicates were performed on a sample, the resulting ECDFs were combined to create one master ECDF for that sample.
DOI: 10.5061/dryad.kd1qt0p.2/5.2
title: Figure 2 - Source Data 5

description: This zip archive contains the original z-stacks used for Figure 2, panels H-I. These are provided as TIF files, which are readable by FIJI. All imaging parameters are included in the image metadata. They are labeled by “Group#” (indicating which CDF they below to in the figure) and “Trial#” if multiple technical replicates were done for a given sample from a Group. The control done in Hanks’ Balanced Salt Solution (HBSS) is labeled as “HBSS”. 

Additionally, this file contains .csv files of all the statistics on particle sizes collected by the ImageJ macro. These are labeled in the format “Group#_trial#_automated_counting_statistics”. It also contains a .csv file of the particle # IDs of the singlet particles that were used to get the average singlet size, which was then used to normalize the ECDFs (as explained in detail in Materials and Methods). These are labeled in the format “Group#_trial#_singlet_IDs”. These .csv files were used in combination with the jupyter notebooks provided (also provided in this submission) to generate Figure 2, panels H-I. If multiple technical replicates were performed on a sample, the resulting ECDFs were combined to create one master ECDF for that sample.
DOI: 10.5061/dryad.kh587f2/2
title: Code accompanying Biology Letters article, "Negative biotic interactions drive predictions of distributions for species from a grassland community"

description: Code to perform total length analysis
DOI: 10.5061/dryad.p042h0c/1
title: 0_usambara
DOI: 10.5061/dryad.p042h0c/2
title: 1_sites
DOI: 10.5061/dryad.p042h0c/3
title: 2_isolation_occurrence
DOI: 10.5061/dryad.rf1b3/1
title: Data from: Does maternal rearing environment affect the behaviour, fecundity and fitness of an insect herbivore and its natural enemy?

description: File contains data on pea aphid choice tests (choices made and information about the plants used), aphid performance data (including fecundity (rm) and survival and information about the plants used), parasitoid wasp choice tests (choices made between different host plants and different host plants and aphids and information about the aphids used) and parasitoid wasp performance data (including number of mummies
DOI: 10.5061/dryad.v57471h/1
title: life_history_plasticity_laboratory_experiment

description: Data from the laboratory experiment.
DOI: 10.17632/fy636ywkzy.1
title: Data for: Effects of removing floodplain forest on the diet of a frugivorous fish species after dams closure in Amazon

description: Dataset for Effects of removing floodplain forest on the diet of a frugivorous fish species after dams closure in Amazon
DOI: 10.17632/hcpxnjp4xm.1
title: Data for: Primary Effects of Changes in Meteorology vs. Anthropogenic Emissions on Mercury Wet Deposition: A Modeling Study

description: Hourly simulated data for Huntington Wildlife Forest (HWF) and Bronx site. Scenarios included: BASE_2010, EMIS_2005, EMIS_noNYS, MET_2004, MET_2005, MET_2007.
DOI: 10.5061/dryad.08vv50n/1
title: gel_v1_asm.fasta

description: Genome assembly of Gelsemium sempervirens (version 1), containing 3,352 scaffold sequences
DOI: 10.5061/dryad.08vv50n/2
title: cro_v2_asm.fasta

description: Genome assembly of Catharanthus roseus (version 2), containing 2,090 scaffold sequences
DOI: 10.5061/dryad.08vv50n/3
title: gel_v1.gene_models.gff3

description: Gene Model Annotation for Gelsemium sempervirens (version 1) in Generic Feature Format 3 (GFF3)
DOI: 10.5061/dryad.08vv50n/4
title: gel_v1.transcripts.fasta

description: Gelsemium sempervirens (version 1) transcript sequences
DOI: 10.5061/dryad.08vv50n/5
title: gel_v1.proteins.fasta

description: Gelsemium sempervirens (version 1) protein sequences
DOI: 10.5061/dryad.08vv50n/6
title: cro_v2.gene_models.gff3

description: Gene Model Annotation for Catharanthus roseus (version 2) in Generic Feature Format 3 (GFF3)
DOI: 10.5061/dryad.08vv50n/7
title: cro_v2.proteins.fasta

description: Catharanthus roseus (version 2) protein sequences
DOI: 10.5061/dryad.08vv50n/8
title: cro_v2.transcripts.fasta

description: Catharanthus roseus (version 2) transcript sequences
DOI: 10.5061/dryad.0kf782p/1
title: Landmark Data

description: TPS file containing landmark data
DOI: 10.5061/dryad.0kf782p/2
title: Phylogenetic Tree

description: A nexus file containing the phylogenetic tree used in the phylogenetic comparative methods.
DOI: 10.5061/dryad.0kf782p/3
title: Principal Component scores

description: Principal Component scores used to construct the morphospace and also used in the mvMORPH analysis.
DOI: 10.5061/dryad.0kf782p/4
title: PhylogeneticEM data

description: Data used for PhylogeneticEM analysis
DOI: 10.5061/dryad.0kf782p/5
title: Conevol script

description: Script used to run Conevol analysis in R
DOI: 10.5061/dryad.0kf782p/6
title: MVmorph script

description: Script used to perform MVmorph analysis in R
DOI: 10.5061/dryad.0kf782p/7
title: MVmorph_uncertainty script

description: Script used to perform MVmorph analysis while accounting for uncertainty in the trophic ecology
DOI: 10.5061/dryad.0kf782p/8
title: PhylogeneticEM script

description: Script used to perform PhylogeneticEM analysis in R
DOI: 10.5061/dryad.2jh157f/2
title: Table e-2. Supplemental CDR language domain as defined by Knopman, Weintraub, and Pankratz (2011)
DOI: 10.5061/dryad.2jh157f/3
title: Table e-3. Operational guidelines for motor speech severity ratings
DOI: 10.5061/dryad.2jh157f/4
title: Table e-4. Motor speech features and criteria for diagnosing AOS, Dysarthria
DOI: 10.5061/dryad.2jh157f/5
title: Table e-5. Motor speech characterizations (consensus ratings) per patient
DOI: 10.5061/dryad.2jh157f/6
title: Figure e-1. Motor speech regions of interest labelled using SpeechLabel parcellation paradigm
DOI: 10.5061/dryad.4pv2ft0/1
title: Heterozygosity GLMM data

description: Using this data set we fitted a binomial, non-linear, mixed-effects model (GLMM) with a logistic link function to assess the effects of genic and intergenic regions, chromosome length and distance from the centromere on the probability that a window would contain one or more heterozygous SNP. Note: Raw sequence data has been uploaded to NCBI. The pipeline for all of the analyses in this paper can be found at: https://github.com/Social-Insect-Genomics/JEB.heterozygosity.fitness.pipeline).
DOI: 10.5061/dryad.b5s87dt/1
title: ACLS results
DOI: 10.5061/dryad.bt5j6k4/1
title: Case file and coordinate data for big cat attack SatScan analysis (Packer et al)

description: Attack data used for the SatScan analysis for each Panthera population. The first tab is the case file data with the first column: case number, second column: number of cases (attacks in this case), third column: Year/Month. The second tab is the coordinate data (Latitude/Longitude) for each attack.
DOI: 10.5061/dryad.d6s5h2d/10
title: Buffa_et_al_figS6

description: FIG. S6. Character 23: Transverse pterygoid flange. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/11
title: Buffa_et_al_figS7

description: FIG. S7. Character 24: Palatine ramus medial margin. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/12
title: Buffa_et_al_figS8

description: FIG. S8. Character 25: Parasphenoid ornamentation. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/13
title: Buffa_et_al_figS9

description: FIG. S9. Character 30: Orbits in interpterygoid fenestrae. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/14
title: Buffa_et_al_figS10

description: FIG. S10. Character 38: Paraquadrate accessory foramen. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/15
title: Buffa_et_al_figS11

description: FIG. S11. Character 40: Foramen magnum shape. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/16
title: Buffa_et_al_figS12

description: FIG. S12. Character 41: Foramen magnum proportions. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/17
title: Buffa_et_al_figS13

description: FIG. S13. Character 45: Anterior coronoid tooth row. All character states are represented.
DOI: 10.5061/dryad.d6s5h2d/9
title: Buffa_et_al_figS5

description: FIG. S5. Character 18: Postorbital sulcus-posterior skull margin contact. All character states are represented. Supraorbital canal in light gray, infraorbital and postorbital canal in dark gray.
DOI: 10.5061/dryad.dd627hd/1
title: Cravens_and_Boyles_2018_data

description: ß-hydroxybutyrate data for bats captured in mist-nets in western Missouri and identifications of acoustic calls of bats across western Missouri.
DOI: 10.5061/dryad.h3p550p/1
title: Satellite telemetry data

description: Satellite telemetry locations of Calonectris diomedea
DOI: 10.5061/dryad.j89d064/1
title: in vivo RawData

description: Contains the data for bacterial counts in individual chinchilla ears
DOI: 10.5061/dryad.j89d064/2
title: MATLAB code used for analysis

description: Set22A.mat
This set of data provides the mapping from discretized alpha-space to a discretized N-space, as well as all the necessary information used to generate this particular mapping. This mapping was used throughout the data analysis in this manuscript (except as noted in Fig S5).
Qa2Xmap – This matrix variable has 17,645,368 rows and 6 columns. This matrix is a map from alpha-space to N-space. For a given row, the first four columns are the alpha-matrix values {a11, a12, a21, a22}; the last two columns indicate the corresponding steady state N-values (in 106 CFU) {NTHi, Mcat}. See Eqn 3 in Methods B.1.
X1, X2 – This column vector has the discretized values of N1, and N2 respectively (in 106 CFU).
a11, a12, a21, a22 – These column vectors have the discretized values of a11, a12, a21, and a22 respectively.
X1range, X2range – These variables contain the minimum and maximum of N1, and N2 respectively.
Xbns – N1, and N2 were each discretized into this many number of bins.
abns_diag – a11, and a22 were each discretized into this many number of bins.
abns_offdiag – a12, and a21 were each discretized into this many number of bins.
counts – this square matrix records the number of alpha matrices that correspond to steady state values in each bin of N-space.
kappa – this square matrix is equal to “counts” / 17,645,368.
DOI: 10.5061/dryad.kd1qt0p.2/10.2
title: Figure 4 - source data 3

description: This zip archive contains the original z-stacks used for the PEG 100kDa data in Figure 4, panel D. These are provided as TIF files. All imaging parameters are included in the image metadata. They are labeled as follows: 
A7PS290_s9_t1 = 34.4 mg/mL PEG 100 kDa
A7PS290_s10_t1 = 17.2 mg/mL PEG 100 kDa
A7PS290_s11_t1 = 8.59 mg/mL PEG 100 kDa
A7PS290_s12_t1 = 4.29 mg/mL PEG 100 kDa
A7PS290_s13_t1 = 2.15 mg/mL PEG 100 kDa
A7PS290_s14_t1 = 1.07 mg/mL PEG 100 kDa
A7PS290_s15_t1 = 0.536 mg/mL PEG 100 kDa
A7PS290_s16_t1 = 0.268 mg/mL PEG 100 kDa

Additionally, this file contains .csv files of all the statistics on particle sizes collected by the ImageJ macro. These are labeled in the format “zstackname_automated_counting_statistics”, where “zstackname” is the title of the associated z-stack. It also contains a .csv file of the particle # IDs of the singlet particles that were used to get the average singlet size, which was then used to normalize the ECDFs (as explained in detail in Materials and Methods). These are labeled in the format “zstackname_singlet_IDs”, where “zstackname” is the title of the associated z-stack. These .csv files were used in combination with the Jupyter notebooks provided as additional files to this paper to generate Figure 4, panel D.