cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11862663
title: mean_stimulus_response_df_omitted_events.h5

description: dataframe containing the average response for all neurons in the dataset, separated into trials where an image was shown and trials where the stimulus was omitted. Additional metadata includes the mean response in a 500ms window after stimulus or omission onset, the fraction of trials with a significant response for that condition, the transgenic mouse line used, and the visual area, depth and image set for each recorded neuron. Responses are reported as deconvolved calcium events in a [-0.5, 0.75] second window around stimulus or omission onset.
DOI: 10.6084/m9.figshare.11862663.v2
title: mean_stimulus_response_df_omitted_events.h5

description: dataframe containing the average response for all neurons in the dataset, separated into trials where an image was shown and trials where the stimulus was omitted. Additional metadata includes the mean response in a 500ms window after stimulus or omission onset, the fraction of trials with a significant response for that condition, the transgenic mouse line used, and the visual area, depth and image set for each recorded neuron. Responses are reported as deconvolved calcium events in a [-0.5, 0.75] second window around stimulus or omission onset.
DOI: 10.6084/m9.figshare.11862642
title: Alignment Aspergillus section Flavi

description: Sequence alignment of the markers ITS, cmdA, and benA from <i>Aspergillus</i> section <i>Flavi </i>using MAFFT
DOI: 10.6084/m9.figshare.11862642.v1
title: section_flavi_Concatenated.nex

description: Sequence alignment of the markers ITS, cmdA, benA and rpb2 from <i>Aspergillus</i> section <i>Flavi </i>using MAFFT
DOI: 10.6084/m9.figshare.11862642.v2
title: Alignment Aspergillus section Flavi

description: Sequence alignment of the markers ITS, cmdA, and benA from <i>Aspergillus</i> section <i>Flavi </i>using MAFFT
DOI: 10.6084/m9.figshare.11862633
title: R code and datasets to replicate analyses in Clark et al (Molecular Ecology, 2020)

description: R code and raw excel spreadsheets needed to replicate analyses in Clark et al (in review). The excel dataset contains a number of sheets that are required for analysis, including a sheet of parasite infection statuses for individual birds (sheet 1: birds), a sheet containing information on parasite lineage names, MalAvi names and cytochrome-b sequences (sheet 2: lineages) and a sheet that links parasite ID numbers in sheet 1 with parasite lineage names in sheet 2 (sheet 3: link). R scripts in the 'Functions' folder are used in analysis. Please follow steps in the Appendices to replicate the workflow used in the manuscript. A number of libraries are needed along the way, and it is important to follow the file structure shown in the Appendices to ensure smooth replication
DOI: 10.6084/m9.figshare.11862633.v1
title: R code and datasets to replicate analyses in Clark et al (in review)

description: R code and raw excel spreadsheets needed to replicate analyses in Clark et al (in review). The excel dataset contains a number of sheets that are required for analysis, including a sheet of parasite infection statuses for individual birds (sheet 1: birds), a sheet containing information on parasite lineage names, MalAvi names and cytochrome-b sequences (sheet 2: lineages) and a sheet that links parasite ID numbers in sheet 1 with parasite lineage names in sheet 2 (sheet 3: link). R scripts in the 'Functions' folder are used in analysis. Please follow steps in the Appendices to replicate the workflow used in the manuscript. A number of libraries are needed along the way, and it is important to follow the file structure shown in the Appendices to ensure smooth replication
DOI: 10.6084/m9.figshare.11862633.v2
title: R code and datasets to replicate analyses in Clark et al (in review)

description: R code and raw excel spreadsheets needed to replicate analyses in Clark et al (in review). The excel dataset contains a number of sheets that are required for analysis, including a sheet of parasite infection statuses for individual birds (sheet 1: birds), a sheet containing information on parasite lineage names, MalAvi names and cytochrome-b sequences (sheet 2: lineages) and a sheet that links parasite ID numbers in sheet 1 with parasite lineage names in sheet 2 (sheet 3: link). R scripts in the 'Functions' folder are used in analysis. Please follow steps in the Appendices to replicate the workflow used in the manuscript. A number of libraries are needed along the way, and it is important to follow the file structure shown in the Appendices to ensure smooth replication
DOI: 10.6084/m9.figshare.11862468
title: Test.csv

description: <b>Test</b>
DOI: 10.6084/m9.figshare.11862468.v3
title: Test.csv

description: <b>Test</b>
DOI: 10.6084/m9.figshare.11862327
title: Force curves from Fig. S6a, Efremov, Y.M., Bagrov, D.V., Kirpichnikov, M.P., Shaitan, K.V., 2015. Application of the Johnson–Kendall–Roberts model in AFM-based mechanical measurements on cells and gel. Colloids Surfaces B Biointerfaces 134, 131–139. doi:10.1016/j.colsurfb.2015.06.044

description: Force curves from Fig. S6a, Efremov, Y.M., Bagrov, D.V., Kirpichnikov, M.P., Shaitan, K.V., 2015. Application of the Johnson–Kendall–Roberts model in AFM-based mechanical measurements on cells and gel. Colloids Surfaces B Biointerfaces 134, 131–139. doi:10.1016/j.colsurfb.2015.06.044<br>Parameters:InvOLS: 61 nm/nACantilever spring constant: 0.055 nN/nmTip radius: 4500 nm
DOI: 10.6084/m9.figshare.11862468.v2
title: Test.csv

description: <b>Test</b>
DOI: 10.6084/m9.figshare.11862261
title: cuny_vets_data.dta

description: Focuses on aspects of student-veteran engagement in higher education institutions. Contains scales to measure the quality of student-veteran's self-reported relationships with faculty, administration, non-veteran students, and student-veterans. Contains characteristics of military service of student-veteran respondents.
DOI: 10.17637/rh.11862165
title: Focus group study - information security behaviours

description: This is the topic guide used for the focus groups run as part of a larger study on information security behaviours, attitudes and perceptions.
DOI: 10.6084/m9.figshare.11862261.v1
title: cuny_vets_data.dta

description: Focuses on aspects of student-veteran engagement in higher education institutions. Contains scales to measure the quality of student-veteran's self-reported relationships with faculty, administration, non-veteran students, and student-veterans. Contains characteristics of military service of student-veteran respondents.
DOI: 10.17637/rh.11862165.v1
title: Focus group study - information security behaviours

description: This is the topic guide used for the focus groups run as part of a larger study on information security behaviours, attitudes and perceptions.
DOI: 10.6084/m9.figshare.11861892
title: DATA

description: All data related to Sherloc paper.All files _LGD, _geonames and _OSM contain the geographic knowledge bases and the preposed embedding for London and NY and all_tweets contain the twitter files.
DOI: 10.6084/m9.figshare.11861886
title: Data from the study Gene flow effects on populations inhabiting marginal areas: origin matters

description: Data from a conducted study on the effects of different gene flow provenance on marginal populations of Mediterranean alpine <i>Silene ciliata</i> Pourret (Caryophyllaceae) replicated in three mountain ranges of Central Spain. We experimentally tested the effect of three different types of pollen-mediated gene flow on germination rate, seedling size and survival rate in marginal populations and assessed their effects by establishing <i>in situ</i> common gardens. The three different types of pollen-mediated gene flow were; within marginal population, and between marginal-marginal and optimal-marginal populations. To further assess the evolutionary potential of marginal populations, we performed a reciprocal sowing experiment and measured the same fitness components to determine the extent of local adaptation.<br><br>
DOI: 10.6084/m9.figshare.11861889
title: High resolution sub bottom and magnetometer data from southeastern Brazilian coast

description: Marine reflection seismic data from sub-bottom profiler and magnetometer data acquired in the Boqueirão Strait in the North Coast of Sao Paulo, Brazil.
DOI: 10.6084/m9.figshare.11861886.v1
title: Data from the study of adaptive value and gene flow effects on populations inhabiting marginal using in situ common gardens

description: Data from a conducted study on the effects of different gene flow provenance on marginal populations of Mediterranean alpine <i>Silene ciliata</i> Pourret (Caryophyllaceae) replicated in three mountain ranges of Central Spain. We experimentally tested the effect of three different types of pollen-mediated gene flow on germination rate, seedling size and survival rate in marginal populations and assessed their effects by establishing <i>in situ</i> common gardens. The three different types of pollen-mediated gene flow were; within marginal population, and between marginal-marginal and optimal-marginal populations. To further assess the evolutionary potential of marginal populations, we performed a reciprocal sowing experiment and measured the same fitness components to determine the extent of local adaptation.<br><br>
DOI: 10.6084/m9.figshare.11861889.v1
title: High resolution sub bottom and magnetometer data from southeastern Brazilian coast

description: Marine reflection seismic data from sub-bottom profiler and magnetometer data acquired in the Boqueirão Strait in the North Coast of Sao Paulo, Brazil.
DOI: 10.6084/m9.figshare.11861877
title: Dataset and R.code: "Sickness behavior reduces contact calling in vampire bats"

description: This repository contains the dataset and R.code for the manuscript:"Sickness behavior reduces contact calling in Vampire bats".<br>Repository contains two files:<br>(1) Rscript_contact calls.RDescription: This file contains the R.code used to analyse the contact call dataset collected in the experiment.<br>(2) Call_dataset.csvDescription: Contact call dataset collected in the Experiment. <br>
DOI: 10.6084/m9.figshare.11861859
title: An Annual Time Series of Weekly Size-Resolved Aerosol Properties in the Megacity of Metro Manila, Philippines

description: 48-hour, weekly size distributions collected over a 16 month period. Each stage was analyzed for water-soluble ions and elements. Additional sets were collected for gravimetric analysis and black carbon measurements.
DOI: 10.6084/m9.figshare.11861859.v1
title: An Annual Time Series of Weekly Size-Resolved Aerosol Properties in the Megacity of Metro Manila, Philippines

description: 48-hour, weekly size distributions collected over a 16 month period. Each stage was analyzed for water-soluble ions and elements. Additional sets were collected for gravimetric analysis and black carbon measurements.
DOI: 10.6084/m9.figshare.11861877.v1
title: Dataset and R.code: "Sickness behavior reduces contact calling in vampire bats"

description: This repository contains the dataset and R.code for the manuscript:"Sickness behavior reduces contact calling in Vampire bats".<br>Repository contains two files:<br>(1) Rscript_contact calls.RDescription: This file contains the R.code used to analyse the contact call dataset collected in the experiment.<br>(2) Call_dataset.csvDescription: Contact call dataset collected in the Experiment. <br>
DOI: 10.6084/m9.figshare.11861877.v2
title: Dataset and R.code: "Sickness behavior reduces contact calling in vampire bats"

description: This repository contains the dataset and R.code for the manuscript:"Sickness behavior reduces contact calling in Vampire bats".<br>Repository contains two files:<br>(1) Rscript_contact calls.RDescription: This file contains the R.code used to analyse the contact call dataset collected in the experiment.<br>(2) Call_dataset.csvDescription: Contact call dataset collected in the Experiment. <br>
DOI: 10.6084/m9.figshare.11861877.v3
title: Dataset and R.code: "Sickness behavior reduces contact calling in vampire bats"

description: This repository contains the dataset and R.code for the manuscript:"Sickness behavior reduces contact calling in Vampire bats".<br>Repository contains two files:<br>(1) Rscript_contact calls.RDescription: This file contains the R.code used to analyse the contact call dataset collected in the experiment.<br>(2) Call_dataset.csvDescription: Contact call dataset collected in the Experiment. <br>
DOI: 10.6084/m9.figshare.11861754.v1
title: Araucaria_RNA-seq_contigs.fasta

description: Araucaria_RNA-seq_contigs.fasta: fasta archive of contigs from RNA-seq are available at 10.6084/m9.figshare.11861754
DOI: 10.6084/m9.figshare.11861682.v1
title: Araucaria_snps.RAD-seq.vcf

description: Araucaria_snps.RAD-seq.vcf: vcf file containing all SNPs discovered using RAD-seq sequences including those that did not pass the quality filters are available at 10.6084 / m9.figshare.11687874
DOI: 10.6084/m9.figshare.11861664
title: Data from: A simple method for the selective quantification of polyethylene, polypropylene, and polystyrene plastic debris in soil by pyrolysis-gas chromatography/mass spectrometry

description: This collection contains data and R code to reproduce the findings published in the following article:<br><br> Z. Steinmetz, A. Kintzi, K. Muñoz, G.E. Schaumann, A simple method for the selective quantification of polyethylene, polypropylene, and polystyrene plastic debris in soil by pyrolysis-gas chromatography/mass spectrometry, Journal of Analytical and Applied Pyrolysis. (2020) 104803. https://doi.org/10.1016/j.jaap.2020.104803. <br>For further details, please read the README file.
DOI: 10.6084/m9.figshare.11861712.v1
title: Araucaria_snps.RNA-seq.vcf

description: Araucaria_snps.RNA-seq.vcf: vcf file containing all SNPs discovered using RNA-seq sequences including those that did not pass the quality filters are available at 10.6084/m9.figshare.11861712
DOI: 10.6084/m9.figshare.11861355
title: Quantitative weight of evidence method for combining predictions of quantitative structure-activity relationship models

description: A method for combining statistical-based QSAR predictions of two or more binary classification models is presented. It was assumed that all models were independent. This facilitated the combination of positive and negative predictions using a quantitative weight of evidence (qWoE) procedure based on Bayesian statistics and the additivity of the logarithms of the likelihood ratios. Previous studies combined more than one prediction but used arbitrary strengths for positive and negative predictions. In our approach, the combined models were validated by determining the sensitivity and specificity values, which are performance metrics that are a point of departure for obtaining values that measure the weight of evidence of positive and negative predictions. The developed method was experimentally applied in the prediction of Ames mutagenicity. The method achieved a similar accuracy to that of the experimental Ames test for this endpoint when the overall prediction was determined using a combination of the individual predictions of more than one model. Calculating the qWoE value would reduce the requirement for expert knowledge and decrease the subjectivity of the prediction. This method could be applied to other endpoints such as developmental toxicity and skin sensitisation with binary classification models.
DOI: 10.6084/m9.figshare.11861355.v1
title: Quantitative weight of evidence method for combining predictions of quantitative structure-activity relationship models

description: A method for combining statistical-based QSAR predictions of two or more binary classification models is presented. It was assumed that all models were independent. This facilitated the combination of positive and negative predictions using a quantitative weight of evidence (qWoE) procedure based on Bayesian statistics and the additivity of the logarithms of the likelihood ratios. Previous studies combined more than one prediction but used arbitrary strengths for positive and negative predictions. In our approach, the combined models were validated by determining the sensitivity and specificity values, which are performance metrics that are a point of departure for obtaining values that measure the weight of evidence of positive and negative predictions. The developed method was experimentally applied in the prediction of Ames mutagenicity. The method achieved a similar accuracy to that of the experimental Ames test for this endpoint when the overall prediction was determined using a combination of the individual predictions of more than one model. Calculating the qWoE value would reduce the requirement for expert knowledge and decrease the subjectivity of the prediction. This method could be applied to other endpoints such as developmental toxicity and skin sensitisation with binary classification models.
DOI: 10.6084/m9.figshare.11861130
title: Adhikari et al. 2020.xlsx

description: this is the data set of epiphytes (Orchids and ferns) in two host trees in two forest management in Nepal Himalayas.
DOI: 10.6084/m9.figshare.11861112
title: results for undergraduate paediatric dental education questionnaire UK

description: Dataset for the pending publication:How is paediatric dentistry taught? A survey to evaluate undergraduate dental teaching in dental schools in the United Kingdom.<br><br>
DOI: 10.5281/zenodo.3996737
title: Data for the paper "Rapid hippocampal plasticity supports motor sequence learning"

description: Data for the paper "Rapid hippocampal plasticity supports motor sequence learning"
DOI: 10.5281/zenodo.3996736
title: Data for the paper "Rapid hippocampal plasticity supports motor sequence learning"

description: Data for the paper "Rapid hippocampal plasticity supports motor sequence learning"
DOI: 10.6084/m9.figshare.11860995
title: Supplementary Tables.docx

description: We include all the primer sequences used in the study.<br>The second table includes all the individual data regarding fatty acid composition.
DOI: 10.6084/m9.figshare.11860995.v1
title: Supplementary Tables.docx

description: We include all the primer sequences used in the study.<br>The second table includes all the individual data regarding fatty acid composition.
DOI: 10.6084/m9.figshare.11860980
title: Breeding preferences in the treefrogs <i>Dryophytes japonicus</i> (Hylidae) in Mongolia

description: When a species occurs over a broad range of climates and landscapes, the breeding ecology of that species is expected to vary locally. Additionally, a basic knowledge of breeding ecology is required before other types of studies may be conducted, such as physiology or conservation. In North East Asia, <i>Dryophytes japonicus</i> is distributed from Japan to Mongolia, where its breeding ecology is unknown. The objectives of this study were to understand the breeding requirements of <i>D. japonicus</i> in this part of its range. We collected data for <i>Dryophytes japonicus</i> at 56 sites located within 23 independent localities in Northern Mongolia during the breeding season 2017. The data collected included habitat type and co-occurring amphibian, fishes and bird species. Our results show that the species prefers <i>circa</i> 70 m long oxbow lakes for breeding, while habitat characteristics, water quality and co-occurring species were not significantly associated with the occurrence of the species. We therefore conclude that <i>D. japonicus</i> is behaviourally plastic in Mongolia, as it is in other portions of its range, and that the species can use several types of environments and co-occur with different species at its breeding sites. <i>Corvus dauuricus</i> was the only bird species significant predicting the occurrence of <i>D. japonicus</i>, likely because of overlapping ecological preferences.
DOI: 10.6084/m9.figshare.11860974
title: Radiocarbon in dissolved organic and inorganic carbon of the South China Sea

description: This data set provides details for hydrodynamic data, concentrations and carbon isotopic (δ<sup>13</sup>C and Δ<sup>14</sup>C) compositions of DIC and DOC measurements in the water samples collected from the South China Sea in 2015-2019.
DOI: 10.6084/m9.figshare.11860974.v1
title: Radiocarbon in dissolved organic and inorganic carbon of the South China Sea

description: This data set provides details for hydrodynamic data, concentrations and carbon isotopic (δ<sup>13</sup>C and Δ<sup>14</sup>C) compositions of DIC and DOC measurements in the water samples collected from the South China Sea in 2015-2019.
DOI: 10.6084/m9.figshare.11860980.v1
title: Breeding preferences in the treefrogs <i>Dryophytes japonicus</i> (Hylidae) in Mongolia

description: When a species occurs over a broad range of climates and landscapes, the breeding ecology of that species is expected to vary locally. Additionally, a basic knowledge of breeding ecology is required before other types of studies may be conducted, such as physiology or conservation. In North East Asia, <i>Dryophytes japonicus</i> is distributed from Japan to Mongolia, where its breeding ecology is unknown. The objectives of this study were to understand the breeding requirements of <i>D. japonicus</i> in this part of its range. We collected data for <i>Dryophytes japonicus</i> at 56 sites located within 23 independent localities in Northern Mongolia during the breeding season 2017. The data collected included habitat type and co-occurring amphibian, fishes and bird species. Our results show that the species prefers <i>circa</i> 70 m long oxbow lakes for breeding, while habitat characteristics, water quality and co-occurring species were not significantly associated with the occurrence of the species. We therefore conclude that <i>D. japonicus</i> is behaviourally plastic in Mongolia, as it is in other portions of its range, and that the species can use several types of environments and co-occur with different species at its breeding sites. <i>Corvus dauuricus</i> was the only bird species significant predicting the occurrence of <i>D. japonicus</i>, likely because of overlapping ecological preferences.
DOI: 10.6084/m9.figshare.11860899
title: The acute effects of different levels og intermittent negative pressure on peripheral circulation in patients with peripheral artery disease

description: Dataset 0, -10. -20, -40 and -60 mmHg
DOI: 10.6084/m9.figshare.11860899.v1
title: The acute effects of different levels og intermittent negative pressure on peripheral circulation in patients with peripheral artery disease

description: Dataset 0, -10. -20, -40 and -60 mmHg
DOI: 10.6084/m9.figshare.11860893
title: Enterobacterales colonisation of hospital sink drains

description: Supplementary data repository for a study of enterobacterales colonisation of hospital sink drains<br>
DOI: 10.6084/m9.figshare.11860893.v1
title: Enterobacterales colonisation of hospital sink drains

description: Supplementary data repository for a study of enterobacterales colonisation of hospital sink drains<br>