cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2rh22m7/1
title: Data from Walton et al "Hungry for the Queen"

description: TAB 2 "Experiment 1 QMP response". The observation counts of bees contacting a QMP slide, and the average proportion of individuals that contacted the slide for both diet treatments. TAB 2 "Experiment 2 QMP response". The proportion of individuals that contacted the slide QMP for all 4 diet treatments (larval, adult). TAB 3 "Experiment 2 lipids". Mass and percent lipid values for bees from all 4 diet treatments (broken down by larval and adult treatments). TAB 4 "Experiment 2 ovarioles" Ovariole counts for bees from all 4 diet treatments.
DOI: 10.5061/dryad.321d33v/1
title: Cocoa bean fermentation model

description: Datasets and codes supporting the article: "A mathematical model of cocoa bean fermentation" by Mauricio Moreno-Zambrano, Sergio Grimbs, Matthias S. Ullrich and Marc-Thorsten Hütt
DOI: 10.5061/dryad.32j0040/1
title: data for dryads

description: Raw data used for comparative analyses on eye colour in owls
DOI: 10.5061/dryad.38c4h63/1
title: Shechonge_MicrosatelliteData_Dryad_2018

description: Microsatellite data, Convert format, for focal sites and reference samples
DOI: 10.5061/dryad.38c4h63/2
title: Shechonge_GeometricMorphometricData

description: Landmark coordinates, tps file
DOI: 10.5061/dryad.38c4h63/3
title: Morphometric data

description: Linear measurements. Included are species assignments based on the genetic data (Structure output).
DOI: 10.5061/dryad.3dt11m7/1
title: fielddata

description: data collected on the collective prey attacking behavior of experimental colonies of Stegodyphus dumicola social spiders deployed on fences and trees in the field, near Upington, South Africa.
DOI: 10.5061/dryad.3dt11m7/2
title: labdata

description: Data collected on the collective prey attacking behavior of experimental colonies of Stegodyphus dumicola social spiders deployed on fences and trees in the greenhouse.
DOI: 10.5061/dryad.3dt11m7/3
title: colonymetrics

description: Data collected on prey presence, persistence, and other ecologial variables in experimental colonies of Stegodyphus dumicola social spiders deployed on fences and trees in the field, near Upington, South Africa.
DOI: 10.5061/dryad.4rn55kq/1
title: Pabies1.0-HC.1000mRNA1000

description: Reference fasta file used for mapping the reads containing all high confidence genes from the Picea genome (Nystedt et al. 2013) with 1000 bp before and after the mRNA if available
DOI: 10.5061/dryad.4rn55kq/2
title: Pabies1.0-HC.1000mRNA1000.gene.sorted

description: gff file with annotations for CDS regions of the high confidence genes in the Picea abies genome (Nystedt et al. 2013)
DOI: 10.5061/dryad.4rn55kq/3
title: Pabies1.0-HC.1000mRNA1000.probes.sorted

description: gff file with information on all probe regions in the SeqCap Epi probe set used in this publication
DOI: 10.5061/dryad.50q65s0/1
title: C++ simulation program

description: Program simulating a haploid, facultatively sexual population undergoing stabilizing selection on an arbitrary number of quantitative phenotypic traits, and with genetic variation for the rate of sex.
DOI: 10.5061/dryad.57qr203/10
title: Figure 4

description: Code to produce figure 4.
DOI: 10.5061/dryad.57qr203/11
title: Predicted means from LMM mean dispersal

description: Predicted means for mean dispersal distance for current density by habitat quality and current density by juvenile density treatment combinations for experimental and background beetles.
DOI: 10.5061/dryad.57qr203/12
title: Figure 5

description: Code to produce figure 5.
DOI: 10.5061/dryad.57qr203/13
title: Figure S1

description: Code to calculate estimated carrying capacities using data from Stewart et al. 2017.
DOI: 10.5061/dryad.57qr203/14
title: Figure S2

description: Plots correlation between mean distance dispersed of experimental and standardized beetles within an array for each treatment combination (Fig S2).
DOI: 10.5061/dryad.57qr203/7
title: Figure 3

description: Code to produce figure 3.
DOI: 10.5061/dryad.57qr203/8
title: Predicted means from ordinal regression (DM)

description: Predicted means from ordinal regression model for current density by juvenile density treatment combinations.
DOI: 10.5061/dryad.57qr203/9
title: Predicted means from ordinal regression (DH)

description: Predicted means from ordinal regression for current density by habitat quality treatment combinations.
DOI: 10.5061/dryad.5fn863j/1
title: Body shape data

description: Tps file created using TPSDIG2 v.2.26 containing x and y coordinates of 17 homologous landmarks that were placed on the image of each fish. The ID contains the year, generation (pb - parents before the experiment, pa - parents after the experiment, F1- offspring), population or type of cross (KaL - Kalambo lake, NdL - Ndole lake, LfR - Lufubu river), individual ID and sex.
DOI: 10.5061/dryad.5fn863j/2
title: Measurements, survival and number of matings for the introduced adults

description: Standard length (SL), total length (TL) and weight (W) of all the introduced (SL0, TL0, W0) and all the recovered (SL1, TL1, W1) adults .
DOI: 10.5061/dryad.5fn863j/3
title: Mating data per female-male pair

description: Number of mating events and number of surviving free-swimming offspring per each female-male pair
DOI: 10.5061/dryad.679s1dt/3
title: 2011_ground_dweling_beetles_vegetation

description: Ground dwelling beetles were sampled in 35 cut stands and 10 old-growth forests with pitfall traps. We calculated several indices to test the influence of habitat heterogeneity on species assemblages. Structural heterogeneity in each stand was described with five indices: (1) the number of diameter classes (2-cm classes) for standing trees, combining live and dead individuals; (2) the amount of CWD; and (3) time-since-logging (stand age). We also estimated compositional heterogeneity through (4) the number of tree and shrub species, and (5) the dominant tree species in the stand. Age classes: C1, C2, C3, and C4 represent 4–20, 21–30, 31–50, and 51–70-years-old clear-cut stands, respectively, and OF is for old-growth forest of at least 120-years-old. The last index representing the dominant tree species in the stand is composed of three mutually exclusive classes: stands that were dominated by either spruce (EE) or fir (SS) species (species representing more than 60 % of basal area); and stands co-dominated by both spruce and fir (ES) species (species representing 40 to 60 % of basal area).
DOI: 10.5061/dryad.6r1t61j/1
title: jmodeltest_pp

description: Phyllonorycter platoon COI HT jmodeltest results
DOI: 10.5061/dryad.6r1t61j/2
title: PP_COI

description: Phyllonorycter platani samples basic data COI
DOI: 10.5061/dryad.6r1t61j/3
title: samples

description: Phyllonorycter platani voucher data
DOI: 10.5061/dryad.723m1.4
title: Data from: MycoDB, a global database of plant response to mycorrhizal fungi
DOI: 10.5061/dryad.723m1.4/1.4
title: MycoDB_version4
DOI: 10.5061/dryad.7ms1bb5/1
title: Network structure data for Zhao et al Oikos

description: The Microsoft Excel spreadsheet contains network and species level metrics for the 32 visitation networks and their corresponding pollen transport networks in the Yulong Mountain, SW China. The file contains four sheets: (1) network level metrics; (2) plant species level metrics; (3) insect species level metrics; (4) pollen transport roles of insects. The contents of all columns are described in the file.
DOI: 10.5061/dryad.8f89tp3/1
title: Additional file 2

description: SNP profiles of 187 grapevine accessions included in the set of samples #1, genotyped at 18K loci. Dataset resulted was filtered based on SNP call quality and GenTrain score: samples with low SNP call quality (p50GC&lt;0.54) were removed from the analysis and only SNPs with a GenTrain score higher than 0.6 were retained. "A": homozygous for dominant allele; "B": heterozygous for recessive allele; "?": missing data.
DOI: 10.5061/dryad.bp6714t/1
title: Camelina microcarpa diploid and Camelina sativa crosses Mar 12 2018

description: Information on the seed use and crosses completed between between Camelina microcarpa (female, 2n = 12) and Camelina sativa (male, 2n = 40).
DOI: 10.5061/dryad.d7p3b40/1
title: rwl_Semmeldalen

description: Cross-section raw ring-widths (micrometers) in format "Tucson". See the associated file "Shrub_Semmeldalen_info".
DOI: 10.5061/dryad.d7p3b40/2
title: Shrub_Semmeldalen_info

description: Description of the individual cross-sections with a description of the column names in the second sheet of this document.
DOI: 10.5061/dryad.f0s23r8/119
title: Donor 94

description: Data for donor 94
DOI: 10.5061/dryad.f0s23r8/120
title: Donor 137

description: Data for donor 137
DOI: 10.5061/dryad.f0s23r8/121
title: Donor 141

description: Data for donor 141
DOI: 10.5061/dryad.f0s23r8/122
title: Donor 178

description: Data for donor 178
DOI: 10.5061/dryad.f0s23r8/123
title: Donor 187

description: Data for donor 187
DOI: 10.5061/dryad.f0s23r8/124
title: Donor 198

description: Data for donor 198
DOI: 10.5061/dryad.hf492bp/1
title: euro_xbill_gprobs

description: Matrix of genotype probabilities for all individuals included in the paper. File compressed with gzip.
DOI: 10.5061/dryad.hf492bp/2
title: L_sinesciurus_gapcloser.fa

description: Loxia sinesciurus first draft genome assembly. Contains 64453 scaffolds and contigs. File compressed with gzip.
DOI: 10.5061/dryad.hf492bp/3
title: palearctic_crossbill_fastqs

description: Directory containing .fastq files for all individuals analyzed in the paper. This includes 114 Loxia curvirostra (including representatives of each of 3 sedentary subspecies), 6 L. pytyopsittacus, and 3 L. leucoptera (which were used as an outgroup in phylogenetic analyses. This directory has been compressed as a tar archive. To uncompress from the command line:$ tar -zxvf palearctic_crossbill_fastqs.tgz
DOI: 10.5061/dryad.k6j0h.2
title: Data from: Higher fungal diversity is correlated with lower CO2 emissions from dead wood in a natural forest
DOI: 10.5061/dryad.k6j0h.2/1.2
title: otutable_first200_tax

description: Top 200 most reads OTUs with their taxonomy assignment and reads number
DOI: 10.5061/dryad.k6j0h.2/3.2
title: Bioinformatic command script

description: An example bioinformatic script
DOI: 10.5061/dryad.kp275f9/1
title: RawData

description: This is the excel file used during data collection and for the data analyses. For each step and each experiment of the study, it provides information about the day of testing, the name of the subjects tested, the session and trial number, the side on which each population was presented, and the choice of the monkeys.
DOI: 10.5061/dryad.nf3t684/10
title: Belyk_RSOS_opendata_c13

description: Raw fMRI and skull-stripped structural MRI data for participant c13
DOI: 10.5061/dryad.nf3t684/11
title: Belyk_RSOS_opendata_c14

description: Raw fMRI and skull-stripped structural MRI data for participant c14
DOI: 10.5061/dryad.nf3t684/12
title: Belyk_RSOS_opendata_c15

description: Raw fMRI and skull-stripped structural MRI data for participant c15
DOI: 10.5061/dryad.nf3t684/13
title: Belyk_RSOS_opendata_design

description: Experimental design and timing information. Each subfolder contains the start times of experimental blocks for low, comfort, middle, and high pitch blocks, measured in acquisition volumes.
DOI: 10.5061/dryad.nf3t684/8
title: Belyk_RSOS_opendata_c11

description: Raw fMRI and skull-stripped MRI data for participant c11
DOI: 10.5061/dryad.nf3t684/9
title: Belyk_RSOS_opendata_c12

description: Raw fMRI and skull-stripped structural MRI data for participant c12
DOI: 10.5061/dryad.rm3558f/2
title: Sequence_COI_EYER

description: Mitochondrial sequences of the Cytochrome oxidase 1 marker for the invasive ant species Brachyponera chinensis in its native and introduced ranges.
DOI: 10.5061/dryad.rt7f0b0.1/3.1
title: Endpoint data from developmental toxicity assay

description: The endpoints include percent_affected, percent_malformed, n_dead per well, n_malformed per well
DOI: 10.5061/dryad.rt7f0b0.1/4.1
title: Endpoint (quantity type) data from the neurotoxicity assay

description: Endpoints include L1_distmoved, D1_distmoved, L2_distmoved, , and D2_distmoved. Responses include both normalized and non-normalized.
DOI: 10.5061/dryad.s03n4d1/1
title: Phenotypic data for Onset of flowering and stem diameter at flowering

description: This file contains data for onset of flowering and stem diameter at flowering for each individual. For each individual, factors are assigned, like population name, year collected, treatment, block, replicates etc.
DOI: 10.5061/dryad.s03n4d1/2
title: Phenotypic data for SLA

description: This file contains data for specific leaf area (SLA) measured on a subset of individuals. The file also contains individual information, like population, collection year, treatment, block, replicate etc.
DOI: 10.5061/dryad.s03n4d1/3
title: phenotypic data for WUE

description: This file contains the isotopic analyses as returned by the stabke isotope lab. For water-use efficiency, we used delta13C from the data file. The file also contains individual information, like population, collection year, treatment, block, replicate etc.
DOI: 10.5061/dryad.s03n4d1/4
title: pheno_seedmass

description: This file contains total seed mass measured for each individual. The file also contains individual information, like population, collection year, treatment, block, replicate etc.
DOI: 10.5061/dryad.s03n4d1/5
title: data for selection analyses

description: This file contains data for the selection analysis: seed mass, onset of flowering and stem diameter at flowering. From there we calculated standardized traits and relative fitness. The file also contains individual information, like population, collection year, treatment, block, replicate etc.
DOI: 10.5061/dryad.sc1dr77/1
title: Seasonal species richness and abundance in Mount Cameroon lowland rainforest

description: The data table corresponds to the number of Lepidoptera specimen of each species collected per sampled season.
DOI: 10.5061/dryad.th0v8td/1
title: sequences

description: ITS and rps16 sequences of Mirabilis himalaica
DOI: 10.5061/dryad.th0v8td/2
title: analyses

description: Bayesian, maximum likelihood, and Beast analyses related files
DOI: 10.5061/dryad.0bg620m/1
title: Abiotic and vegetation structure parameters of the microhabitat of Lacerta viridis at the core and northern periphery of its distribution range.
DOI: 10.5061/dryad.33nd74t/1
title: data-archive

description: Gland volumes, MALDI-TOF profiles, and SDS-PAGE relative intensities
DOI: 10.5061/dryad.46c39p1/1
title: Murphy et al. Genotype data for scat, hair, tissue samples and samples from gray wolf red wolf and dog

description: Datafile contains genotypes at 17 microsatellites from hair, fecal and tissue samples from Southwestern Louisiana as well as genotypes from gray wolves, red wolves, dogs and coyotes from the southeastern United States.
DOI: 10.5061/dryad.47t0b41/1
title: code_database

description: Contains Python and R code for compiling the empirical data, plus the full empirical database.
DOI: 10.5061/dryad.47t0b41/2
title: README

description: Contains readme and notes for all files.
DOI: 10.5061/dryad.47t0b41/3
title: code_analysis

description: Contains R code, txt and CSV files for analyzing the empirical data.
DOI: 10.5061/dryad.47t0b41/4
title: code_theoretical

description: Contains Matlab code (.m files) and data (.mat files) for running model simulation data used for Figures 2 and 3 in the paper.
DOI: 10.5061/dryad.47t0b41/5
title: fullmodelequations

description: Contains pdf supplement for the paper with the full model equations and parameter table.
DOI: 10.5061/dryad.4h4b82m/1
title: Data Porcel et al. (2018) JAE

description: Data from: Organic management in apple orchards: higher impacts on biological control than on pollination, Porcel, Mario, Andersson, Georg, Pålsson, Joakim, Tasin, Marco
DOI: 10.5061/dryad.57qr203/15
title: Predicted means from LMM (standard deviation)

description: Predicted means and CIs for linear mixed model of standard deviation of dispersal kernels of experimental and standardized beetles.
DOI: 10.5061/dryad.57qr203/16
title: Predicted means from LMM (maximum)

description: Predicted means of maximum distance linear mixed model dispersed for current density by juvenile density treatment combinations.
DOI: 10.5061/dryad.57qr203/17
title: Figure S3

description: Code for producing figure S3.
DOI: 10.5061/dryad.57qr203/18
title: Predicted means from ordinal regression (JH)

description: Predicted means from ordinal regression for juvenile density by habitat quality treatment combinations.
DOI: 10.5061/dryad.57qr203/19
title: Figure S4

description: Code to produce figure S4.
DOI: 10.5061/dryad.57qr203/20
title: Growth Rate

description: Calculates average growth rate for different juvenile density treatments.
DOI: 10.5061/dryad.5ht0fv1.2
title: Data from: Immune deployment increases larval vulnerability to predators and inhibits adult life-history traits in a dragonfly
DOI: 10.5061/dryad.5ht0fv1.2/1.2
title: Moore_Lis_Martin_2018_JEB_survival_emergence
DOI: 10.5061/dryad.5ht0fv1.2/2.2
title: Moore_Lis_Martin_2018_JEB_adult_lh
DOI: 10.5061/dryad.5ht0fv1.2/3.2
title: Moore_Lis_Martin_2018_JEB_ornament
DOI: 10.5061/dryad.5ht0fv1.2/4.2
title: Moore_Lis_Martin_2018_JEB_performance_costs
DOI: 10.5061/dryad.5ht0fv1.2/5.2
title: Moore_Lis_Martin_2018_JEB_immune_pilot
DOI: 10.5061/dryad.5ht0fv1.2/6.2
title: Moore_Lis_Martin_2018_JEB_marking_pilot
DOI: 10.5061/dryad.723m1.4/2.4
title: FungalTree_version2
DOI: 10.5061/dryad.723m1.4/3.4
title: PlantTree_version2
DOI: 10.5061/dryad.723m1.4/4.4
title: README
DOI: 10.5061/dryad.723m1.4/5.4
title: phylometa_2018
DOI: 10.5061/dryad.72q5723/1
title: Seifert_et_al_Data_Barnswallows

description: Data file contains stable isotope data (d2H, d13C, d15N, d18O) measured in Barn Swallows catched in Switzerland and Italy. Stable isotope signatures indicate isotopic conditions in the individual bird's non-breeding grounds in sub-Saharan Africa. Additional information is given: sex, year of capture, centre point (latitude, longitude) of kernel density estimates identified by geolocation
DOI: 10.5061/dryad.745g830/1
title: Tomlinson JECOL-2018 Individual data

description: Data is for measurements taken on individuals at 0, 5 and 20 weeks after planting. Data for each age of sampling are recorded in separate sheets. Traits measured at 0 weeks were: initial mass of recently germinated seedlings (Mass0, g). Traits measured at 5 weeks were: root extension rate (RER, mm d-1), and specific taproot length (STRL, m g-1). Traits  measured at 20 weeks were: total mass (Mass, g), root mass fraction (RMF, g root mass g-1 total mass), stem extension rate (SER, mm d-1), specific leaf area (SLA, cm2 g-1), leaf nitrogen content (Nm, mg N g-1), leaf phosphorus content (Pm, mg P g-1), leaf potassium content  (Km, mg K g-1), leaf assimilation rate (Am, nmol CO2 g-1 s-1), stomatal conductance (gs, μmol H2O m-2 s-1), and plant photosynthetic water use efficiency (PWUE, μmol CO2 μmol-1 H2O).
DOI: 10.5061/dryad.819236j/1
title: UVC data

description: This file contains raw data collected using underwater visual census (UVC). The data is fish abundances and measures of habitat characteristics from three sites (Barwon Heads, Apollo Bay and Wilson's Promontory) in south-eastern Australia.
DOI: 10.5061/dryad.819236j/2
title: BRUV data

description: This file contains raw data collected using baited remote underwater video (BRUV). The data is fish abundances and measures of habitat characteristics from three sites (Barwon Heads, Apollo Bay and Wilson's Promontory) in south-eastern Australia.
DOI: 10.5061/dryad.897qf4r/1
title: Data for Richardson & Smiseth JEB

description: Comma separated spreadsheet with data from "Effects of variation in resource acquisition during different stages of the life cycle on life-history traits and trade-offs in a burying beetle". See ReadMe for details.
DOI: 10.5061/dryad.bp6714t/2
title: Camelina microcarpa tetraploid and Camelina sativa hybrid data March 12 2018

description: Information on seed sources, crossing work and characterization of the morphology and fertility of hybrids reared in the green house for crosses between Camelina microcarpa (2n = 26; female) and Camelina sativa (2n = 40; male). Metadata on contents is included in the first sheet of the workbook.
DOI: 10.5061/dryad.bp6714t/3
title: Camelina microcarpa hexaploid and Camelina sativa hybrid data March 12 2018

description: Information on seed sources, crossing work and characterization of the morphology and fertility of hybrids reared in the green house and field for crosses between Camelina microcarpa (2n = 40; female) and Camelina sativa (2n = 40; male). Metadata on contents is included in the first sheet of the workbook.
DOI: 10.5061/dryad.d7p3b40/3
title: Semmeldalen LME output

description: Ring growth and above-ground biomass time-series obtained from linear mixed-effects models. See the description of the column names in the second sheet of this document.
DOI: 10.5061/dryad.dn4f7b3/1
title: dataBEHECO-2018-0119
DOI: 10.5061/dryad.f0s23r8/46
title: Donor 102 - Bw6

description: fcs files for ABC donor 102
DOI: 10.5061/dryad.f0s23r8/47
title: Donor 115 - Bw6

description: fcs files for ABC donor 115
DOI: 10.5061/dryad.f0s23r8/48
title: Donor 120 - Bw6

description: fcs files for ABC donor 120
DOI: 10.5061/dryad.f0s23r8/50
title: Donor 124 - Bw6

description: fcs files for ABC donor 124
DOI: 10.5061/dryad.f2j3615/1
title: Y_maze_data

description: Responses of individual biosensor mice in the Y maze. Note that training trial performance is included in this file, but these data are not shown in the final manuscript file (Fig. 2).
DOI: 10.5061/dryad.f2j3615/2
title: Cohort2_FreelyInteracting_PeakResponses

description: Peak responses for cohort 2 mice (freely interacting pairs). Note that peak responses are not continuous from 1-68 because of preprocessing (e.g., removal of peaks that were not related to mouse urine).
DOI: 10.5061/dryad.f2j3615/3
title: Cohort3_PhysicallySeparated_PeakResponses

description: Peak responses for cohort 3 mice (physically separated pairs). Note that peak responses are not continuous from 1-68 because of preprocessing (e.g., removal of peaks that were not related to mouse urine).
DOI: 10.5061/dryad.gd2rv6b/1
title: Forewing marking coloration and cyanogenic glucoside data for Zygaenidae in this study

description: This file contains all the data for the main analyses in this study: specimen info (ID, species, collection year and locality, sex, mass), coloration metrics (% forewing area, luminance, saturation, hue, internal contrasts with wing ground colour), and cyanogenic glucoside data (total amounts and concentration of linamarin, lotaustralin and total cyanogenic glucosides). Note: Hue 1 corresponds to the hue channel used in the paper; Hue 2 is based on the second principal component generated by PCA, and was not used in the final analyses. FW=Forewing.
DOI: 10.5061/dryad.gd2rv6b/2
title: Cyanogenic glucoside levels - original data and 2017 re-run

description: This file presents data for the 20 specimens for which LC-MS quantification of cyanogenic glucosides was re-run in 2017. It contains specimen information and cyanogenic glucoside data for the original run (data analysed in 2015 and 2016, when the samples were collected) and for the new run in 2017, when samples from 2015 and 2016 were analysed together.
DOI: 10.5061/dryad.k6j0h.1
title: Data from: Higher fungal diversity is correlated with lower CO2 emissions from dead wood in a natural forest
DOI: 10.5061/dryad.k6j0h.1/1.1
title: otutable_first200_tax

description: Top 200 most reads OTUs with their taxonomy assignment and reads number
DOI: 10.5061/dryad.k6j0h.2/4.2
title: S1 fungus_CROP_R_script_nonrarefied

description: The HTML outputs of the R scripts using the non-rarefied CROP datasets
DOI: 10.5061/dryad.k6j0h.2/5.2
title: S1 fungus_CROP_R_script_rarefied

description: The HTML outputs of the R scripts using the rarefied CROP datasets