cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-698651946
title: The Israeli BAG

description: The BAG is quite large with 24 principal investigators covering almost all groups in Israel. The scientific topics are diverse and so different that depicting them in a short Abstract is extremely difficult. In this context BAG members are studying the parameters that govern protein assemblage, structural impacts of signaling processes in different cascades. There are several projects that are directed towards molecular recognition with implementation towards drug design. In addition, we still have the ribosome project and the design of unique antibiotics with specific functional interactions from the mycinamycins family and their resistance related mechanism compared with other macrolides and the photosystem and how it converts light into energy. Since Covid-19 is still a relevant topic as are other viral infections BAG members are and have been involved in the understanding of the infection process and the means to hinder it.
DOI: 10.15151/esrf-es-700326901
title: Heidelberg BAG (HeidelBAG)

description: The HeidelBAG unifies structural efforts of EMBL Heidelberg and the Heidelberg University Biochemistry Center (BZH). Central to all projects are large assemblies involved in chromosome organization and transcription control, in nuclear and cytoplasmic RNA regulation, in translational control by ribosome associated factors or further on in protein targeting, membrane protein insertion or post-translational modification. While Eric Stebbins from DKFZ has left the BAG, Jirka Peschek from BZH will join and adds projects on tRNA ligases and interactors. Nearly all projects make use of integrated structural biology techniques combined with complementary biophysical, biochemical and cell biological approaches, a strategy that warranties the continuous success of the BAG. More and more pathological implications of the studied central cellular processes come into focus. In the 1st year of the proposal the BAG reports on 17 publications and 43 PDB entries and many unpublished results.
DOI: 10.15151/esrf-es-705444905
title: BAG Montpellier

description: The BAG of Montpellier ...
DOI: 10.15151/esrf-es-800574962
title: Fibers of collagens, secret and unknown of the eardrum: role in the reception of sounds in frogs

description: The ear is a complex biomechanical system dedicated to sound perception, even though part of the auditory function is located in the central nervous system. The evolution of a tympanic ear has been a key innovation in solving the impedance problem between air and biological tissues allowing sound to reach the inner ear. The coupling between the two middle ear cavities has an effect on the directionality of the eardrum, which acts as a pressure difference sensor. We aim at identifying and quantifying in detail the tympanum structures related to sound perception. We will use nanotomography as a basis for the construction of a highresolution three-dimensional dataset. Such 3D models and comparisons between data obtained for 20 samples of species varying in their frequency response should enable the understanding of the biomechanical basis of hearing very high frequency sounds.
DOI: 10.15151/esrf-es-779990317
title: Inhouse research

description: USAXS and SAXS measurements of saponins in the presence of salt and nonaqueous solvents.
DOI: 10.15151/esrf-es-806940000
title: Investigating organic films for antimicrobial coatings with increased longevity

description: Investigating organic films for antimicrobial coatings with increased longevity with XRR
DOI: 10.15151/esrf-es-809570423
title: Operando SXDM study of LMNO and NMC cathode material

description: A beam focused to ~60nm will be used to scan a cathode particle during charging. This willi give us insight into the delithiation process on the nanoscale inside of single crystall particles.
DOI: 10.15151/esrf-es-808490995
title: High-pressure and temperature behaviour and crystal fluid interactions in heulandite, laumontite and belbergite

description: While the high-pressure and high-temperature behavior of natural zeolites has been intensively studied in the last decades by several researchers, to the best of our knowledge, no in-situ X-ray diffraction studies have been performed combining the effects of both. Experiments at these conditions could have crucial geological implications: during the early stages of the diagenetic process (i.e., zeolite facies), both pressure (P) and temperature (T) increase, following different thermal gradient (e.g., about 25°C/Km for the first few kilometers of the continental crust). In this proposal, we want to perform simultaneous high-T and high-P conditions in diamond anvil cell (DAC), using H2O-based mixtures as P-transmitting fluids. This will allow to study the in-situ, the PT-driven adsorption and desorption mechanisms of H2O, the most important geological fluid, in 3 natural zeolites , namely laumontite, heulandite and belbergite.
DOI: 10.15151/esrf-es-812509677
title: diffraction studies on lubricants

description: diffraction studies on lubricants
DOI: 10.15151/esrf-es-792101715
title: HERFD-XAS study of CeO2 and FeCo-based core-shell particles

description: We intend to study the the reaction mechanism of CeO2 nanoparticles with hydrogen peroxide (H2O2) by controlled synthesis using x-ray absorption spectroscopy. CeO2 systems are widely used in areas of catalysis, fuel cells, and biomedical applications. The goal of our research is to gain insights into the dynamic Ce3+/Ce4+ formation that is fundamental to modulate the catalytic performance. We will also perform HERFD XAS on FeCo-based core-shell particles. We expect that these in-situ HERFD measurements detect changes in the electronic structure, and provide evidence on the ion that is responsible for the promising catalytic properties.
DOI: 10.15151/esrf-es-809461252
title: Magnetism in Eu 122s

description: Magnetism in Eu 122s
DOI: 10.15151/esrf-es-807560600
title: Study of VI3 and CrI3 by X-ray linear and magnetic circular dichroism

description: In 2D van der Waals trihalides ferromagnets MX3 - where M is a transition metal and X a halogen - the local electronic configuration around the metal centers determines both the long range magnetic order and the electronic properties. In CrI3, the typical coordination of Cr atoms is octahedral and most of its known magnetic and electronic properties arise from it. For VI3 instead, it was recently suggested in theoretical papers that the electronic character of V d-states stabilizes a trigonal distorted configuration via a Jahn-Teller (JT) mechanism. With this experiment, we want to perform X-ray Natural Linear Dichroism (XNLD) measurements to check the orbital order in bulk VI3 and compare it with the predictions.
DOI: 10.15151/esrf-es-704493659
title: Fundamental study of ionics in single-digit confinement

description: The formation of ion pairs is not taken into account by the continuous models of the aqueous solution transport in single-digit nanoconfinement. This is really important since we found recently that it leads to metastable phase formation and to pore clogging. The goal of this project is to characterize the transport of electrolyte solutions having ions of various size and different ability to form ion pairs in silica nanochannels with a gap of 1, 2, 3 and 5 nm using hard X-ray reflectivity. Coupled to atomistic modelling, these results will give reliable information such as the electron density profiles and the ion distributions, enabling a better fundamental understanding of the ions and water transport in single-digit confinement.
DOI: 10.15151/esrf-es-754076196
title: Unveiling new boron-based 2D nanomaterials by synthesis in molten salts

description: This proposal aims at discovering new bi-dimensional materials made of transition metals and boron: MBenes. Although these solid-state phases are expected to exhibit important optoelectronic and catalytic properties, their synthesis could be achieve up to now only at a very small scale and with a large amount of crystal defects, which hinder the study of their properties. To reach some of these materials for the first time, especially a bidimensional iron boride, we want to explore an unreported synthesis pathway: the exfoliation of lamellar compounds MAB (A=metalloid) into inorganic liquids: molten salts. To achieve this goal, we need to understand the reactivity and the transformations of metal borides into molten salts, which are mostly a black box for chemical synthesis. We will shed light on the evolution of these layered materials into molten salts by performing in situ time resolved X-ray diffraction and scattering (PDF analysis).
DOI: 10.5281/zenodo.6524060
title: video recordings_job interviews_performance reviews

description: Data set including video recordings of organisational practices: job interviews, performance appraisal interviews and job meetings. Data in Italian, Finnish and English. Data recorded in 2019, 2020. File "data management sheet" includes the list of recordings. File "data description" includes description of the data set. Video recordings are not open acess because they contain personal idenitifiers. Access is restricted and the main researcher can be contacted.
DOI: 10.5281/zenodo.6524059
title: video recordings_job interviews_performance reviews

description: Data set including video recordings of organisational practices: job interviews, performance appraisal interviews and job meetings. Data in Italian, Finnish and English. Data recorded in 2019, 2020. File "data management sheet" includes the list of recordings. File "data description" includes description of the data set. Video recordings are not open acess because they contain personal idenitifiers. Access is restricted and the main researcher can be contacted.
DOI: 10.6084/m9.figshare.19744933.v1
title: Development of Chatbot to promoting Mental health for aging in the communities during the global pandemic of COVID-19 and flooding

description: The development of Chatbot to promoting Mental health for aging in the communities during the global pandemic of COVID-19 and flooding
DOI: 10.6084/m9.figshare.19744933.v2
title: Chatbot Aiaun

description: Chatbot Aiaun
DOI: 10.25403/upresearchdata.19732489
title: Re-imagining Anglican Special Religious Education (SRE) in a post-secular context: an evaluative interpretation

description: Datasets contain the questions and answers from the interview questions used in gathering data on people's experiences of Special Religious Education (SRE). This data was used to evaluate the SRE programme run in New South Wales (NSW), Australia, public primary schools. Also included are models of educational programme evaluation and curriculum planning and programming decision-making frameworks.
DOI: 10.25403/upresearchdata.19732489.v1
title: Re-imagining Anglican Special Religious Education (SRE) in a post-secular context: an evaluative interpretation

description: Datasets contain the questions and answers from the interview questions used in gathering data on people's experiences of Special Religious Education (SRE). This data was used to evaluate the SRE programme run in New South Wales (NSW), Australia, public primary schools. Also included are models of educational programme evaluation and curriculum planning and programming decision-making frameworks.
DOI: 10.5281/zenodo.5383858
title: Novel Datasets for Evaluating Song Popularity Prediction Tasks

description: We present two novel datasets for hit song prediction (HSP): HSP-S and HSP-L. They are substantially larger than currently available dataset with respect to the number of features contained. Both datasets provide high- and low-level audio features stemming from AcousticBrainz and short representative MP3 samples. Further, we include listener- and play-counts gathered from last.fm for both datasets. The larger dataset, HSP-L, contains 73,482 songs with audio features, listener- and play-counts, making it substantially larger than previous datasets. In addition, we provide the release year information for 65,575 songs as provided by the Million Song Dataset.<br> The smaller dataset, HSP-S, contains 7,736 songs, listener- and play-counts as well as Billboard Hot 100 data for 50% of the songs, and release year information is available for 7,449 songs.
DOI: 10.5281/zenodo.5383857
title: Novel Datasets for Evaluating Song Popularity Prediction Tasks

description: We present two novel datasets for hit song prediction (HSP): HSP-S and HSP-L. They are substantially larger than currently available dataset with respect to the number of features contained. Both datasets provide high- and low-level audio features stemming from AcousticBrainz and short representative MP3 samples. Further, we include listener- and play-counts gathered from last.fm for both datasets. The larger dataset, HSP-L, contains 73,482 songs with audio features, listener- and play-counts, making it substantially larger than previous datasets. In addition, we provide the release year information for 65,575 songs as provided by the Million Song Dataset.<br> The smaller dataset, HSP-S, contains 7,736 songs, listener- and play-counts as well as Billboard Hot 100 data for 50% of the songs, and release year information is available for 7,449 songs.
DOI: 10.6084/m9.figshare.19480787
title: Supplementary Material for: Influencing Factors for Choosing Korean Medicine Therapy after Spinal Surgery in Patients with Spinal Pain: A Semi-Structured Interview Study

description: Introduction: This study is a qualitative study based on 1:1 semi-structured interviews designed to explore the treatment selection process and factors that influence the treatment decisions of patients with spinal pain undergoing surgery or Korean medicine treatment. Methods: Patients admitted to a Korean hospital for treatment after either undergoing or receiving a recommendation for spinal surgery, were aged 19–74 years, could communicate in Korean, and who provided informed consent were invited to participate in the study. Of the 15 participants selected, 9 underwent spinal surgery, while 6 had spinal surgery recommended but did not choose to have it. Results: Three main themes emerged from the interviews: the patient’s personal and subjective information and situation; objective information; and the physician’s information and competence. Recommendations by and cases of people around them had the greatest influence on patients who chose Korean medicine treatment (their own situation). Patients who chose surgery tended to be influenced by their physicians, whose opinions had the greatest influence on their choice. Conclusions: Treatment decisions are influenced by: recommendations by and cases of acquaintances; patient’s direct and indirect experiences; patient’s will and judgement; internet searches; physician’s opinions; and trust in the physician. The factors that influence the choice of Korean medicine treatment and surgery clearly differ. The findings would be useful for clinicians and patients who must decide between various treatments modality recommendations.
DOI: 10.6084/m9.figshare.19480787.v1
title: Supplementary Material for: Influencing Factors for Choosing Korean Medicine Therapy after Spinal Surgery in Patients with Spinal Pain: A Semi-Structured Interview Study

description: Introduction: This study is a qualitative study based on 1:1 semi-structured interviews designed to explore the treatment selection process and factors that influence the treatment decisions of patients with spinal pain undergoing surgery or Korean medicine treatment. Methods: Patients admitted to a Korean hospital for treatment after either undergoing or receiving a recommendation for spinal surgery, were aged 19–74 years, could communicate in Korean, and who provided informed consent were invited to participate in the study. Of the 15 participants selected, 9 underwent spinal surgery, while 6 had spinal surgery recommended but did not choose to have it. Results: Three main themes emerged from the interviews: the patient’s personal and subjective information and situation; objective information; and the physician’s information and competence. Recommendations by and cases of people around them had the greatest influence on patients who chose Korean medicine treatment (their own situation). Patients who chose surgery tended to be influenced by their physicians, whose opinions had the greatest influence on their choice. Conclusions: Treatment decisions are influenced by: recommendations by and cases of acquaintances; patient’s direct and indirect experiences; patient’s will and judgement; internet searches; physician’s opinions; and trust in the physician. The factors that influence the choice of Korean medicine treatment and surgery clearly differ. The findings would be useful for clinicians and patients who must decide between various treatments modality recommendations.
DOI: 10.6084/m9.figshare.19744975
title: Chemical complementarity between immune receptor CDR3s and candidate cancer antigens correlating with reduced survival: evidence for outcome mitigation with corticosteroid treatments

description: The evaluation of physicochemical characteristics of extensive adaptive immune receptor (IR) recombination sequence collections has led to the discovery of many correlations of those sequences and a variety of diseases, including cancer. In the cancer setting, these evaluations have recently focused on the adaptive IR, complementarity determining region-3 (CDR3) amino acid (AA) sequences, which play a major role in antigen binding. For example, the chemical complementarities of the tumor resident, CDR3 AA sequences and the BRAFV600E mutant, common in melanoma, have proved informative with regard to outcomes. Many of these evaluations led to the conclusion that a high affinity match, efficiently, algorithmically designated as a high chemical complementarity score (CS) for the patient specific, IR CDR3 AA sequences and the cancer antigens, correlated with improved survival outcomes. In this report, the complementarity scoring algorithms were used to investigate the opposite phenomenon, high complementarity chemistry between CRD3 AAs and cancer antigens that correlated with a worse survival, an approach that revealed potential risk stratification biomarkers for lung adenocarcinoma, lung squamous carcinoma, and likely other cancer types. Most importantly, analyses suggested that high IR CDR3 AA-candidate antigen CS, low overall survival results for low grade glioma were mitigated by neoadjuvant corticosteroid treatments. Overall, the analyses of this report, coupled with earlier work establishing the CS approach for identifying likely good outcomes, have the potential to distinguish patients who will benefit from (i) immune activating or (ii) immune augmenting or (iii) even immunosuppressive treatment strategies. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.19744975.v1
title: Chemical complementarity between immune receptor CDR3s and candidate cancer antigens correlating with reduced survival: evidence for outcome mitigation with corticosteroid treatments

description: The evaluation of physicochemical characteristics of extensive adaptive immune receptor (IR) recombination sequence collections has led to the discovery of many correlations of those sequences and a variety of diseases, including cancer. In the cancer setting, these evaluations have recently focused on the adaptive IR, complementarity determining region-3 (CDR3) amino acid (AA) sequences, which play a major role in antigen binding. For example, the chemical complementarities of the tumor resident, CDR3 AA sequences and the BRAFV600E mutant, common in melanoma, have proved informative with regard to outcomes. Many of these evaluations led to the conclusion that a high affinity match, efficiently, algorithmically designated as a high chemical complementarity score (CS) for the patient specific, IR CDR3 AA sequences and the cancer antigens, correlated with improved survival outcomes. In this report, the complementarity scoring algorithms were used to investigate the opposite phenomenon, high complementarity chemistry between CRD3 AAs and cancer antigens that correlated with a worse survival, an approach that revealed potential risk stratification biomarkers for lung adenocarcinoma, lung squamous carcinoma, and likely other cancer types. Most importantly, analyses suggested that high IR CDR3 AA-candidate antigen CS, low overall survival results for low grade glioma were mitigated by neoadjuvant corticosteroid treatments. Overall, the analyses of this report, coupled with earlier work establishing the CS approach for identifying likely good outcomes, have the potential to distinguish patients who will benefit from (i) immune activating or (ii) immune augmenting or (iii) even immunosuppressive treatment strategies. Communicated by Ramaswamy H. Sarma
DOI: 10.12751/g-node.ib9tty
title: Unsupervised discovery of behaviorally relevant brain states in rats playing hide-and-seek

description: Data collected for Reinhold et al. (2019, Science), as well as Concha‐Miranda et al. (2020, Eur. J. Neurosci.). Reorganized for further analysis of the neural data in Bagi et al. (2022, Current Biology).
description: IsSupplementTo: Reinhold, A.S., Sanguinetti-Scheck, J.I., Hartmann, K., and Brecht, M. (2019). Behavioral and neural correlates of hide-and-seek in rats. Science 365, 1180–1183. (https://doi.org/10.1126/science.aax4705)
description: IsSupplementTo: Concha‐Miranda, M., Hartmann, K., Reinhold, A., Brecht, M., and Sanguinetti-Scheck, J.I. (2020). Play, but not observing play, engages rat medial prefrontal cortex. Eur. J. Neurosci. 52, 4127–4138. (https://doi.org/10.1111/ejn.14908)
description: IsSupplementTo: Bagi, B., Brecht, M., and Sanguinetti-Scheck, J.I. (2022). Unsupervised discovery of behaviorally relevant brain states in rats playing hide-and-seek. Current Biology. (in press).
DOI: 10.6084/m9.figshare.19744954
title: Foliar δ13C and tree growth of Chinese pine in the Beijing metropolitan region

description: Here, we sampled foliage and tree rings of Chinese pine (<em>Pinus tabuliformis</em>) in the Beijing metropolitan region, China, to examine whether and how urban CO2 emissions affect stable carbon isotope ratios (δ13C) and tree growth spatially and/or temporally.
DOI: 10.6084/m9.figshare.19744957
title: Understanding Travel Avoidance of Tourists to a Heritage Destination

description: The attached data set is the raw data collected as part of the survey conducted for the research paper titled <strong>Understanding Travel Avoidance of Tourists to a Heritage Destination</strong>
DOI: 10.5281/zenodo.6467350
title: Data and Scripts used in "Analysis of Relations Between Solar Activity, Cosmic Rays and Earth Climate Using Machine Learning Techniques"

description: This archive contains the data in relation to the work: Analysis of relations between solar activity, cosmic rays and earth climate using machine learning techniques<br> B. Belen, U. M. Leloglu, and M. B. Demirkoz See README file for more details.
DOI: 10.5281/zenodo.6467349
title: Data and Scripts used in "Analysis of Relations Between Solar Activity, Cosmic Rays and Earth Climate Using Machine Learning Techniques"

description: This archive contains the data in relation to the work: Analysis of relations between solar activity, cosmic rays and earth climate using machine learning techniques<br> B. Belen, U. M. Leloglu, and M. B. Demirkoz See README file for more details.
DOI: 10.5281/zenodo.6536413
title: data for 2021JD036418

description: Data for 2021JD036418 to plot the figures.
DOI: 10.5281/zenodo.6536292
title: data for 2021JD036418

description: Data for 2021JD036418 to plot the figures.
DOI: 10.6084/m9.figshare.19745066.v1
title: Additional file 1 of Genome-wide identification and expression characterization of the DoG gene family of moso bamboo (Phyllostachys edulis)

description: Additional file 1: Table S1. Distribution of the DOG family in the bZIP family.
DOI: 10.6084/m9.figshare.19745069.v1
title: Additional file 2 of Genome-wide identification and expression characterization of the DoG gene family of moso bamboo (Phyllostachys edulis)

description: Additional file 2: Table S2. Cis-element analysis.