cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21317773
title: Infection dynamics of <i>Salmonella</i> Infantis vary considerably between chicken lines

description: <i>Salmonella</i> (<i>S.</i>) Infantis is the most common serovar in broilers and broiler meat in the European Union. In the field, fast-growing broilers are reported to be more affected than slow-growing and layer birds. The present study investigated the infection dynamics and immunological response of four chicken lines in the course of a <i>S</i>. Infantis infection. Two commercial chicken lines, Ross 308 and Hubbard ISA-JA-757, and two experimental chicken lines, specific pathogen free (SPF) layers and broilers, were infected at 2 days of age. Investigations focused on faecal shedding, bacterial colonization, humoral and cellular immune response. Ross and SPF broilers proved mainly as high shedders followed by Hubbard. SPF layers showed the least shedding. This is in agreement with the caecal colonization; SPF layers harboured significantly less bacteria. Systemic spread of <i>S</i>. Infantis to liver and spleen was highest in Ross broilers compared to the other lines. Spread of infection to in-contact birds, was noticed 5 days post infection in every line. Antibody response occurred in every chicken line from 21 days of age onwards. In contrast to the other chicken lines, significant differences in T cell subsets and monocytes/macrophages were found between infected and negative Hubbard birds at 7 days of age. Uninfected SPF birds had significantly higher immune cell counts than uninfected commercial birds, a fact important for future experimental settings. The results illustrate that the infection dynamics of <i>S</i>. Infantis is influenced by the chicken line resulting in a higher risk of transmission to humans from fast-growing broilers. <b>RESEARCH HIGHLIGHTS</b>Infection dynamics of <i>Salmonella</i> Infantis differs between chicken lines.Layers showed less faecal shedding and caecal colonization compared to broilers.Fast-growing broilers proved more susceptible than slow-growing broilers. Infection dynamics of <i>Salmonella</i> Infantis differs between chicken lines. Layers showed less faecal shedding and caecal colonization compared to broilers. Fast-growing broilers proved more susceptible than slow-growing broilers.
DOI: 10.6084/m9.figshare.20455151
title: Development and evaluation of temperature-sensitive <i>Mycoplasma anserisalpingitidis</i> clones as vaccine candidates

description: <i>Mycoplasma anserisalpingitidis</i> is economically the most important pathogenic <i>Mycoplasma</i> species of waterfowl in Europe and Asia. The lack of commercially available vaccines against <i>M. anserisalpingitidis</i> had prompted this study with the aim to produce temperature-sensitive (ts<sup>+</sup>) clones as candidates for an attenuated live vaccine. The production of ts<sup>+</sup> clones was performed by N-methyl-N′-nitro-N-nitrosoguanidine (NTG)-induced mutagenesis of Hungarian <i>M. anserisalpingitidis</i> field isolates. The clones were administered via eye-drop and intracloacally to 33-day-old geese. Colonization ability was examined by PCR and isolation from the trachea and cloaca, while the serological response of the birds was tested by ELISA. Pathological and histopathological examinations were performed in the eighth week after inoculation. Whole-genome sequence (WGS) analysis of the selected clone and its parent strain was also performed. NTG-treatment provided three ts<sup>+</sup> mutants (MA177/1/11, MA177/1/12, MA271). MA271 was detected at the highest rate from cloacal (86.25%) and tracheal (30%) samples, while MA177/1/12 and MA271 elicited remarkable serological responses with 90% of the birds showing seroconversion. Re-isolates of MA271 remained ts<sup>+</sup> throughout the experiment. Based on these properties, clone MA271 was found to be the most promising vaccine candidate. WGS analysis revealed 59 mutations in the genome of MA271 when compared to its parent strain, affecting both polypeptides involved in different cellular processes and proteins previously linked to bacterial fitness and virulence. Although further studies are needed to prove that MA271 is in all aspects a suitable vaccine strain, it is expected that this ts<sup>+</sup> clone will contribute to the control of <i>M. anserisalpingitidis</i> infection. <b>RESEARCH HIGHLIGHTS</b>Three <i>M. anserisalpingitidis</i> ts<sup>+</sup> vaccine candidates were produced by NTG-mutagenesis.Clone MA271 was able to colonize geese and induce a serological response.MA271 re-isolates remained ts<sup>+</sup> during the 8-week-long experiment.WGS analysis revealed 59 mutations in the genome of MA271. Three <i>M. anserisalpingitidis</i> ts<sup>+</sup> vaccine candidates were produced by NTG-mutagenesis. Clone MA271 was able to colonize geese and induce a serological response. MA271 re-isolates remained ts<sup>+</sup> during the 8-week-long experiment. WGS analysis revealed 59 mutations in the genome of MA271.
DOI: 10.3886/qv44-8393
title: Namibia Compact - Community-Based Rangeland & Livestock Management: Final Analysis Report
DOI: 10.3886/34xd-1h36
title: Namibia Compact - Conservancy Support: Final Analysis Report
DOI: 10.3886/89s9-tr24
title: Namibia Compact - Conservancy Support: Final Analysis Report
DOI: 10.3886/v523-sy18
title: Malawi Compact - Environment and Natural Resources Management: Design Report
DOI: 10.3886/7afa-9x42
title: Malawi Compact - Environment and Natural Resources Management: Design Report
DOI: 10.5281/zenodo.6791937
title: Multi Stain Deep Learning

description: This repository contains surrogate data for our code repository on multistain deep learning. For more information, please refer to the link and associated publications.<br> All data provided is intended for research purposes only. We, the authors, assume no guarantee, liability or warranty. There is no claim to correctness. <strong>data.zip</strong>:<br> This archive contains histopathological image tiles of healthy colonic mucosa and colorectal carcinoma. The folders postfixed with "_noise" contain images of uniformly distributed random noise. The images in quarter_crop(_noise) have been generated by center cropping the images in half_crop(_noise) to half their original resolution. The original whole slides are available for research purposes from the TCGA COAD cohort. Please consider the original TCGA licenses and all other limitations found within the GDC data portal.<br> <strong>saved.zip</strong>:<br> This archive contains checkpoint files of unimodal and multimodal models trained on a subset of the data in data.zip. Furthermore, the "evaluation" subfolders contain model evaluation results on validation data.
DOI: 10.5281/zenodo.6791936
title: Multi Stain Deep Learning

description: This repository contains surrogate data for our code repository on multistain deep learning. For more information, please refer to the link and associated publications.<br> All data provided is intended for research purposes only. We, the authors, assume no guarantee, liability or warranty. There is no claim to correctness. <strong>data.zip</strong>:<br> This archive contains histopathological image tiles of healthy colonic mucosa and colorectal carcinoma. The folders postfixed with "_noise" contain images of uniformly distributed random noise. The images in quarter_crop(_noise) have been generated by center cropping the images in half_crop(_noise) to half their original resolution. The original whole slides are available for research purposes from the TCGA COAD cohort. Please consider the original TCGA licenses and all other limitations found within the GDC data portal.<br> <strong>saved.zip</strong>:<br> This archive contains checkpoint files of unimodal and multimodal models trained on a subset of the data in data.zip. Furthermore, the "evaluation" subfolders contain model evaluation results on validation data.
DOI: 10.3886/hkyk-n555
title: El Salvador Investment Compact - Improving Quality of General Education: Design Report
DOI: 10.3886/z0rb-fh53
title: El Salvador Investment Compact - Improving Quality of General Education: Design Report
DOI: 10.5281/zenodo.6772154
title: Small predators dominate fish predation in coral reef communities

description: <strong>README File</strong> The dataset consists of 4 Excel files of which: -<strong>LizardData</strong>: is the fish community data collected on Lizard Island. -<strong>Metanalysis_dataset</strong>: is the gut content metanalysis, used to create the <strong>metanalsamps</strong> dataset, which is the dataset consisting the resampling and binning into body sizes. This was then compared to the <strong>simnetsamps</strong> dataset, which is the resampling and binning from the <strong>LizardData</strong> file.
DOI: 10.5281/zenodo.6772153
title: Small predators dominate fish predation in coral reef communities

description: <strong>README File</strong> The dataset consists of 4 Excel files of which: -<strong>LizardData</strong>: is the fish community data collected on Lizard Island. -<strong>Metanalysis_dataset</strong>: is the gut content metanalysis, used to create the <strong>metanalsamps</strong> dataset, which is the dataset consisting the resampling and binning into body sizes. This was then compared to the <strong>simnetsamps</strong> dataset, which is the resampling and binning from the <strong>LizardData</strong> file.
DOI: 10.3886/4th4-qq72
title: Sierra Leone Threshold - Water Sector Reform: Final Design Report 2022
DOI: 10.3886/5fcy-8698
title: Sierra Leone Threshold - Water Sector Reform: Final Design Report 2022
DOI: 10.5281/zenodo.7291414
title: A predictive group-contribution framework for the thermodynamic modelling of CO2 absorption in cyclic amines, alkyl polyamines, alkanolamines and phase-change amines: new data and SAFT- gamma Mie parameters.FPE 2022

description: All data in the figures in the publication.
DOI: 10.5281/zenodo.7291413
title: A predictive group-contribution framework for the thermodynamic modelling of CO2 absorption in cyclic amines, alkyl polyamines, alkanolamines and phase-change amines: new data and SAFT- gamma Mie parameters.FPE 2022

description: All data in the figures in the publication.
DOI: 10.5281/zenodo.7289792
title: S and Z loci nucleotide sequences of Lolium multiflorum cultivar Rabiosa

description: Nucleotide sequences of two scaffolds spanning the <em>S</em>-locus and two scaffolds the <em>Z</em>-locus in <em>Lolium multiflorum</em> cultivar Rabiosa
DOI: 10.5281/zenodo.7289791
title: S and Z loci nucleotide sequences of Lolium multiflorum cultivar Rabiosa

description: Nucleotide sequences of two scaffolds spanning the <em>S</em>-locus and two scaffolds the <em>Z</em>-locus in <em>Lolium multiflorum</em> cultivar Rabiosa
DOI: 10.5517/ccdc.csd.cc2c3yfw
title: CCDC 2178538: Experimental Crystal Structure Determination

description: Related Article: Lan Zhao, Jun Xu, Jun Ma, Guangwei Yin, Fangyi Li, Tongchuan Suo, Chunhua Wang|2022|New J.Chem.|46|20755|doi:10.1039/D2NJ04147B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d65
title: CCDC 2179926: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d76
title: CCDC 2179927: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d87
title: CCDC 2179928: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5d98
title: CCDC 2179929: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5db9
title: CCDC 2179930: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5dcb
title: CCDC 2179931: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5ddc
title: CCDC 2179932: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c5dfd
title: CCDC 2179933: Experimental Crystal Structure Determination

description: Related Article: Praveen Kumar, Laxmi Devkota, Maximilian C. Casey, Anne A. Fischer, Sergey V. Lindeman, Adam T. Fiedler|2022|Inorg.Chem.|61|16664|doi:10.1021/acs.inorgchem.2c02246
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chvg6
title: CCDC 2189978: Experimental Crystal Structure Determination

description: Related Article: Sofia Zazouli, Nathalie Gruber, Véronique Bulach, Sylvie Ferlay, Abdelaziz Jouaiti|2022|CrystEngComm|24|7632|doi:10.1039/D2CE01001A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chvh7
title: CCDC 2189979: Experimental Crystal Structure Determination

description: Related Article: Sofia Zazouli, Nathalie Gruber, Véronique Bulach, Sylvie Ferlay, Abdelaziz Jouaiti|2022|CrystEngComm|24|7632|doi:10.1039/D2CE01001A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chvj8
title: CCDC 2189980: Experimental Crystal Structure Determination

description: Related Article: Sofia Zazouli, Nathalie Gruber, Véronique Bulach, Sylvie Ferlay, Abdelaziz Jouaiti|2022|CrystEngComm|24|7632|doi:10.1039/D2CE01001A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chvk9
title: CCDC 2189981: Experimental Crystal Structure Determination

description: Related Article: Sofia Zazouli, Nathalie Gruber, Véronique Bulach, Sylvie Ferlay, Abdelaziz Jouaiti|2022|CrystEngComm|24|7632|doi:10.1039/D2CE01001A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2chvlb
title: CCDC 2189982: Experimental Crystal Structure Determination

description: Related Article: Sofia Zazouli, Nathalie Gruber, Véronique Bulach, Sylvie Ferlay, Abdelaziz Jouaiti|2022|CrystEngComm|24|7632|doi:10.1039/D2CE01001A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ck0wv
title: CCDC 2191107: Experimental Crystal Structure Determination

description: Related Article: Siya T. Hulushe, Frederick P. Malan, Eric C. Hosten, Kevin A. Lobb, Setshaba D. Khanye, Gareth M. Watkins|2022|New J.Chem.|46|20940|doi:10.1039/D1NJ03056F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ck177
title: CCDC 2191118: Experimental Crystal Structure Determination

description: Related Article: Siya T. Hulushe, Frederick P. Malan, Eric C. Hosten, Kevin A. Lobb, Setshaba D. Khanye, Gareth M. Watkins|2022|New J.Chem.|46|20940|doi:10.1039/D1NJ03056F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bczg5
title: CCDC 2156467: Experimental Crystal Structure Determination

description: Related Article: Siya T. Hulushe, Frederick P. Malan, Eric C. Hosten, Kevin A. Lobb, Setshaba D. Khanye, Gareth M. Watkins|2022|New J.Chem.|46|20940|doi:10.1039/D1NJ03056F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21514053
title: Short-term stability of rocky intertidal biofilm to nitrogen and phosphorus pulses

description: Data of cholorophyll <em>a</em> concentration (Dat_nut_bioiflm.csv), dark yield (<em>∆F</em>/<em>Fm</em>; df.pam_dark_y_light_y.csv) and light yield (<em>∆F'</em>/<em>Fm'</em>; df.pam_dark_y_light_y.csv) of rocky intertidal biofilm in response to nitrogen phosphorous pulses. The dataset Temp_ligh_data_all.csv includes data of temperature and light intensity collected over the course of the experiment.
DOI: 10.6084/m9.figshare.21514053.v1
title: Short-term stability of rocky intertidal biofilm to nitrogen and phosphorus pulses

description: Data of cholorophyll <em>a</em> concentration (Dat_nut_bioiflm.csv), dark yield (<em>∆F</em>/<em>Fm</em>; df.pam_dark_y_light_y.csv) and light yield (<em>∆F'</em>/<em>Fm'</em>; df.pam_dark_y_light_y.csv) of rocky intertidal biofilm in response to nitrogen phosphorous pulses. The dataset Temp_ligh_data_all.csv includes data of temperature and light intensity collected over the course of the experiment.
DOI: 10.5281/zenodo.7142692
title: Discovery of 24 radio-bright quasars at 4.9

description: Properties of newly discovered high-z quasars (4.9&lt;z&lt;6.6) derived from photometric and spectroscopic observations. The radio measurements have been obtained using the LOFAR Two Metre Sky Survey (LoTSS-DR2; 144 MHz), VLA FIRST (1.4 GHz), and Very Large Array Sky Survey (VLASS; 2-4 GHz). The spectroscopic observations have been conducted using the Faint Object Camera and Spectrograph on the Subaru telescope, LRS2 on the Hobby-Eberly Telescope, and LRIS on Keck. The rest-frame UV magnitudes have been derived by combining the optical to mid-infrared observations and performing spectral energy distribution fitting using the template fitting code EAZY (Brammer et al 2008).