cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8f536skp9w
title: NMscatt: a program for calculating inelastic scattering from large biomolecular systems using classical force-field simulations

description: Abstract Computational tools for normal mode analysis, which are widely used in physics and materials science problems, are designed here in a single package called NMscatt (Normal Modes & scattering) that allows arbitrarily large systems to be handled. The package allows inelastic neutron and X-ray scattering observables to be calculated, allowing comparison with experimental data produced at large scale facilities. Various simplification schemes are presented for analyzing displacement vectors, whic... Title of program: NMscatt Catalogue Id: ADZA_v1_0 Nature of problem Normal mode analysis, phonons calculation, derivation of incoherent and coherent inelastic scattering spectra. Versions of this program held in the CPC repository in Mendeley Data ADZA_v1_0; NMscatt; 10.1016/j.cpc.2007.02.114 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/8c8xmtg9w8
title: Power and Accommodation

description: R scripts for organizing, analyzing, and visualizing data for the "Power and Accommodation" project
DOI: 10.17632/k2rjkxzmn5
title: Extreme Prices, Price Reversals and Business Cycle Effects: Emerging Market Experience

description: My research hypothesis the business cycle effects in crude, dollar, equity and gold market integration. My data shows the monthly values of crude, USD, stock and gold prices. The data is an accumulation of different databases including RBI, WDI, Federal Reserve Economic data and so on.
DOI: 10.17632/kt9wnfdgfh
title: The Impact of Building Retrofit for Energy Poverty Vulnerability Reduction in Portugal

description: Percentage change in Winter Energy Poverty Vulnerability after roof, wall and bundle (roof+wall) retrofit, and in Summer Energy Poverty Vulnerability, after window retrofit, estimated using the EPVI (Gouveia et al., 2019), for the whole building stock of all civil parishes in Portugal.
DOI: 10.17632/prwpfydw26
title: The REY of the nodules collected from Shizi Cave in NE Sichuan, Central China
DOI: 10.17632/rydhf7j4vj
title: Dataset on a primary battery cell with a ferroelectric Li-glass electrolyte

description: The data attached is a comparison between the commercial CR1616 Li-MnO2 cell and Li/Li-glass (Li2.99Ba0.005ClO) in cellulose/gamma-MnO2+C/Al pouch-cell. Although the LED determines the potential profile, the potential is a response to the input current. Therefore, the variable discharge current and potential profiles are useful to determine the maximum current output of a battery cell as well as the standard discharge current and the cell profile. As observed in I vs t data for the commercial cell, the cell’s maximum current is 13 mA and the standard discharge current plateaus below 100 uA when the cell is almost fully discharged (83% = first day). Moreover, the extended plateau for the commercial cell varies from 100 uA to approximately 16.5 uA; most of the capacity of the cell is obtained in the first 30 hrs of discharge (94%). The pouch-cell with 16.2 mg of active cathode material was discharged at room temperature inside an air-filled glove box; it shows a specific capacity of 764 mAh/g-gamma MnO2 (for a theoretical capacity of 209 mAh/g-gamma MnO2), which is higher than the 308 mAh/g of the commercial cell, obtained after discharging it for 11.2 months with a green LED lit uninterruptedly (see Data). It is observed that the profiles for the current in the commercial and pouch-cell differ substantially; while the commercial cell varies its output current from 13 mA to 95 uA in two days and finally to 0.16 uA in more 5 days (the LED was not lit from day 6th with 14 hrs to day 7th with 2 hrs), the Li-glass pouch-cell varies its output current from 1 mA to 17 uA in one day and then to 2 uA in 59 days and it remains lit for 334 days. The data for the commercial cell is divided by the ratio between commercial and pouch-cell active cathodes (13.3) showing a maximum current of 0.977 mA, a plateau from 7.52 to 1.24 uA which compare to Imax = 1.01 mA, plateau from 32 to &gt;=1.24 uA for 4.3 months of the FEB. The coin cell is a 3D cell as the electrolyte wets all cathode powders and the pouch is a 1D cell (only the surface in contact with the Li-glass is effective) and, therefore, the previous calculations are just approximations. The discharge of the commercial cell with the green LED was used as a control method. The capacity determined by this method agrees with the capacity in the corresponding technical spreadsheet. The profile of the green LED used was also determined accurately.
DOI: 10.17632/5r5xzrnz2v
title: Dataset 4A.26: Solutions files, sigma = 1, part 26 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 1.0 on VEGAS-sampled points at \sigma = 200.
DOI: 10.17632/73bbf52sjw
title: Analysis of the data on titration of native and peroxynitrite modified αA- and αB-Cry by copper ions

description: The Trp fluorescence spectra of different α-crystallins with titration of increasing concentrations of copper ions were obtained by a Cary Eclipse fluorescence spectrophotometer. The dependence of fluorescence intensity of different protein samples on the concentration of copper ions was assessed at 337 nm in the absence and presence of different concentrations of copper ion. The affinity of native and peroxynitrite modified αA- and αB-crystallins to copper ions were characterized by analysis of data. The obtained data can be used for interpretation of the effect of copper ions on chaperone-like activity of both native and peroxynitrite modified variants of these proteins.
DOI: 10.17632/ty2yzrbxtw
title: Data for: The Senegal River during the last millennium
DOI: 10.17632/x84fbwc2b8
title: List of Genetic materials

description: list of Genetic materials used to conduct an experiment on heterosis and combining ability of Ethiopian elite sorghum lines
DOI: 10.17632/4nck5pg6b3
title: Data for paper: Cross country application of the manufacturing failures models

description: Data for the paper, for the citation count regrssion
DOI: 10.17632/d7p3yytsvt
title: Georgia Cooperatives Sectors

description: Datasets used in the article: Is the Success of Rural Cooperatives Conditioned by the Group Characteristics and Their Value Chain? Evidence from New Farmer Groups. The paper analyses factors influencing the success of donor-supported agricultural cooperatives using cross-sectional data collected from 37 cooperatives comprising 93 members in rural Georgia.
DOI: 10.17632/7md6sbmz5t
title: Data for: Relationships between population traits, non-structural carbohydrates and elevation in alpine stands of Vaccinium myrtillus L.

description: The data-set is used in the publication entitled: 'Relationships between population traits, non-structural carbohydrates and elevation in alpine stands of Vaccinium myrtillus L.' published in American Journal of Botany (AJB). The research hypothesis, sampling design, methods, analysis, results and interpretation of results are described in the published paper. The data-set include sample sites environmental data, growth traits of Vaccinium myrtillus (bilberry) stands and Non-structural carbohydrates measured in stems of Vaccinium myrtillus.
DOI: 10.17632/b69t3dyp7h
title: Raw data and original image

description: The raw data and the experimentally obtained images captured in this study. The raw data can be opened by Origin software.
DOI: 10.17632/cynsrsdyc7
title: Data used and Model input

description: Temperature, pressure and NCG decline is provided in excell format and model input is also available.
DOI: 10.5281/zenodo.10629708
title: Spotiflow - manuscript data

description: This repository contains data used in the manuscript "Spotiflow: accurate and efficient spot detection with fluroescence microscopy" (Dominguez Mantes et al. 2025). For more information on the data, please refer to the README.md file as well as the manuscript itself.
DOI: 10.5281/zenodo.10629709
title: Spotiflow - benchmarking datasets

description: Fluorescence spot detection datasets used in the paper "Spotiflow: accurate and efficient spot detection for imaging-based spatial transcriptomics with stereographic flow regression". Consists of seven different annotated datasets of synthetic (2), FISH (3) and live-cell imaging (2).
DOI: 10.5281/zenodo.14514463
title: Spotiflow - benchmarking datasets

description: Fluorescence spot detection datasets used in the paper "Spotiflow: accurate and efficient spot detection for fluorescence microscopy with deep stereographic flow regression". Consists of eight different annotated datasets of synthetic (2), FISH (4) and live-cell imaging (2).
DOI: 10.5281/zenodo.14914082
title: Spotiflow - manuscript data

description: This repository contains data used in the manuscript "Spotiflow: accurate and efficient spot detection with fluroescence microscopy" (Dominguez Mantes et al. 2025). For more information on the data, please refer to the README.md file as well as the manuscript itself.
DOI: 10.17632/sf8843rxz7
title: Dataset on the Efficacy of Antibacterial Envelope Cardiovascular Implantable Electronic Devices

description: My data shows the baseline characteristics and infection rates of patients with antibacterial envelope cardiovascular implantable electronic devices (CIED) and conventional CIED. This information was collected after a meticulous search on multiple databases.
DOI: 10.17632/kxp76t299z
title: Electrical resistivity tomography (ERT) data for clay mineral mapping

description: Ten lines of 2D ERT data measured in the field consist of extension .bin, elevation data along the survey lines were measured and added to resistivity data.
DOI: 10.17632/p64ywpbr5c
title: Dataset 2J: Sample files, part 10 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All Paramotopy sample files generated with VEGAS sampling at \sigma = 20.
DOI: 10.17632/5wpvj4jw4x
title: iTRAQ data of murin melanoma tissue sample

description: iTRAQ data of the B16F10 murine melanoma tissue sample form the in vivo study of a highly concentrated form of fermented wheat germ extract.
DOI: 10.17632/3p6pc4zhkw
title: Hourly dust measurements on the high plains of the Llano Estacado

description: Hourly values of ambient dust concentration (TSP) were measured on the roof of the USDA-ARS Plant Stress and Water Conservation (PSWC) Laboratory located at 3810 4th Street in Lubbock, Texas (33.593508 -101.897688). Measurements were obtained continuously from 1 January 2003 to 8 June 2008, a period of more than five years and four months. The sampling system consisted of a model 1400a TEOM (tapered element oscillating microbalance) manufactured by Rupprecht & Patashnick. No cyclone pre-separators or impactors were installed in the sampler inlet so that the system measured total suspended particulates (TSP). The system was mounted on a raised platform such that the sampling inlet was 2.2 m above the flat roof of the building and 7.0 m above the surrounding ground level. Dust is primarily generated in the highly erodible cropland outside of the city limits of Lubbock and transported across the city by winds blowing from various directions. A portion of this dust is blown across the PSWC Lab where ambient dust concentration was measured and recorded. An attempt was made to obtain a continuous record, however, mechanical failures led to occasional gaps in the data record. All TSP concentrations are reported in units of micrograms of dust per cubic meter of air.
DOI: 10.17632/7m43jm2swh
title: Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau

description: This dataset includes 336 records of the Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau. Three fields are presented in the dataset, they are species name, longtitude and latitude. Among these records, 69 were gathered by field investigation in 2013, 25 were downloaded from GBIF (https://www.gbif.org/), 98 were collected from specimens (http://www.cvh.ac.cn/), and the others were taken from the published literature (Yue et al., 2014; Liu and Qi, 2015; Liu et al., 2016; Ma and Sun, 2018). Yue, P.P., Lu, X.F., Ye, R.R., Zhou, Y.B., Yang, S.B., Peng, M., 2014. Community characteristics of Stipa purpurea steppe in the Qinghai Lake region. Acta Prataculturae Sinica 23(4), 10–19. https://doi.10.3724/SP.J.1005.2008.01083. (in Chinese with English abstract) Liu, W.S., Qi, D.H., 2015. Variations of reproductive organs morphology of Stipa purpurea and relationship with climate on the Qinghai-Tibetan Plateau. Pratacultural Science 32(6), 942–951. https://doi.10.11829\j.issn.1001-0629.2014-0426. (in Chinese with English abstract) Liu, W.S., Zhao, Y., You, J.L., Qi, D.H., Zhou, Y., Chen, J.K., Song, Z.P., 2016. Morphological and genetic variation along a North-to-South transect in Stipa purpurea, a dominant grass on the Qinghai-Tibetan Plateau: Implications for response to climate change. PLoS ONE 11(8), e0161972. https://doi.org/10.1371/journal.pone.0161972. Ma, B.B., Sun, J., 2018. Predicting the distribution of Stipa purpurea across the Tibetan Plateau via the MaxEnt model. BMC Ecol. 18, 10. https://doi.10.1186/s12898-018-0165-0.
DOI: 10.17632/fzvsyr22s8
title: Dataset 4S.9: Solutions files, sigma = 100, part 9 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 100 on parameter points sampled to compute the 10-fold visibility ratio.
DOI: 10.17632/frk7n2dhpz
title: Can sterilization help to prevent roaming in owned dogs and cats?

description: Dataset and R script to reproduce all results of the manuscript "Can sterilization help to prevent roaming in owned dogs and cats?"
DOI: 10.17632/sfg48gp37n
title: Data for: Zinc oxide-gold nanocomposite as a proper platform for label-free DNA biosensor

description: Excell data of the experimental results are attached.
DOI: 10.17632/88vrv8bxpj
title: Effects of Commercial Forest Harvesting on the Distribution of the American Black Duck (Anas rubripes) during the breeding period in New Brunswick, Canada

description: Data were collected as part of a Masters of Science in Forestry Degree through the University of New Brunswick with anticipated completion in January 2020. Waterfowl observation data from 1995-2017 were collected during the helicopter based waterfowl breeding pair survey in Eastern Canada by the Canadian Wildlife Service. Waterfowl observation and artificial nest data from 2018 were collected by MScF student, Kelly McLean. Habitat data were provided via GIS by the New Brunswick Department of Energy and Resource Development. Habitat is summarized in files for both the ten and twenty year period following a wetland being surveyed. Artificial nests were created to mimic black duck nests, timing, and incubation period. A nest was considered "successful" if one or more eggs were remaining at the end of the trial period. Response variable of black duck presence/absence, or nest success/failure are binomial.
DOI: 10.17632/jzpjphfmbk
title: Data for: A potential proxy for seasonal hypoxia: LA-ICP-MS Mn/Ca ratios in benthic foraminifera from the Yangtze River Estuary

description: Table 1 Results of Mn/Ca for different samplings of living specimens of F. decorus from Yangtze River estuary. Table 2 Results of Mn/Ca and Mg/Ca on all chambers from seven living (Rose Bengal stained) F. decorus specimens in July 2016 and in Feb 2017.
DOI: 10.17632/f6pd59b9gs
title: Dataset 4C.3: Solutions files, sigma = 1.015625, part 1 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All solutions statistics files for Paramotopy runs with \sigma = 1.015625.
DOI: 10.17632/pzwmgprkvv
title: Dataset 4S.4: Solutions files, sigma = 100, part 4 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 100 on ILR-sampled parameter points in [0.1, 10]^8.
DOI: 10.17632/5rfywy8t73
title: THN access

description: THN access
DOI: 10.17632/vzsw4r33dg
title: Rawdata_2

description: The dataset contains the raw data used for the figure in the manuscript "The UPR sensor IRE1a and the adenovirus E3-19K glycoprotein sustain persistent and lytic infections"
DOI: 10.17632/x5byf9zvj3
title: Data for: Mechanisms that influence the interactions between remediation reagent injection and contamination plume variation

description: raw data
DOI: 10.17632/9kns6d6gpy
title: Data for: Heating and hot water with wood chips. Is it convenient to replace fossil fuel and firewood boilers in southern Chile?

description: . Energy demand for heating and hot water: Energy demand for heating and domestic hot water of a hypothetical residential building with different thermal insulation conditions. .Sizing the heating and hot water system: Sizing different design options with complementary boiler and accumulator tank considering daily and hourly temperature fluctuations. .Fuel supply costs: (i) Alternative fuel requirements based on the net calorific value of each fuel and energy demand requirements. (ii) Estimation of wood chips supply costs. .Economic evaluation of system alternatives. (i) Calculation of investment costs for the heating and hot water alternative systems, the exterior insulation and finish system (EIFS) and the pipe installation for the heating network, (ii) Calculation of operation costs of the heating and hot water systems with different thermal insulation conditions, (iii) Determination of the equivalent annual costs per dwelling for one to five buildings in a network including thermal insulation improvements . (iv) Net present value of firewood boiler replacement by woodchips and by liquified petrol gas boilers.
DOI: 10.17632/xfxst9ztm7
title: Data for: Thermal imaging relative surface temperature as an indicator of plant species diversity and restoration progress

description: This dataset contains all data used in the manuscript by Hamberg, Fraser, Robinson, Trant and Murphy. The hypotheses is that surface temperature will decrease with increasing vegetation diversity, that native diversity is better at decreasing temperature and that surface temperature will decrease over time in restoration areas. We find support for all three of these hypotheses. The dataset contains one xls-file with multiple sheets. A summary of the sheets are presented below: 1. "LEF_veg_data_by_plot_2007-2018" - Includes all vegetation data used in the manuscript. This is a subset of all vegetation data provided by Nature Conservancy of Canada. Any missing data points have been removed and species richness and diversity only include when species were identified to species level. For the full dataset of all sampling done at the site contact me and I can put you in contact with the appropriate NCC staff to get permission to share. 2. "LEF_veg_temp_data_means" - The same data as above but taking the means of each plot transect. Mean relative surface temperature (TempPerM) and mean relative NDVI (NDVI_diff) is also included in this sheet. This data is what underlies the testing of the first and second hypotheses. The 'Type' column indicates if transect was in Active or Passive restoration. 3. "LEF_tempdata" - All temperature data used from the Lake Erie Farms site, including that of the mature forest reference areas. 4. "LEF_NDVIdata" - As above but for NDVI instead of temperature. 5. "ECOSTRESS_paired_data" - shows the diurnal temperature variation for the paired measurements from 2018 ECOSTRESS and (one) Landsat measurements (Paired_diff) for each restoration area and the days since restoration for each field. 6. "ECOSTRESS_all_data" - Same data but unpaired and including the second Landsat reading that was removed due to being taken in June, further away from the other readings seasonally. 7. "Temp_31_fields_post_restoration" - the relative temperature (%tempdiff) for all 31 restoration fields over time since restoration, including relative NDVI. Also includes the air temperature, humidity and wind speed from the Delhi, Ontario weather station as near as possible in time to when the image was taken. Also indicates if 100, &gt;90% and &gt;75% of each area was imaged correctly (i.e. no lost pixels or cloud cover within 200 meters of that pixel). Only areas with &gt;75% of pixels remaining in both the restoration area and the paired mature forest area were retained. 8. "Temp_31_fields_pre_restoration" - Same as above but with the data from before restoration for each field. These sheets are divided as the statistical analysis was made separately on the pre-restoration and post-restoration data. 9. "Temp_31_incl_mature" - All data as above but also including temperature of the paired mature forest areas.
DOI: 10.17632/4kj6v4p8f3
title: Dataset 4H.4: Solutions files, sigma = 1.5, part 4 (Nam et al., Robustness and parameter geography in post-translational modification systems)

description: All proper solutions files for Paramotopy runs with \sigma = 1.5 on ILR-sampled parameter points in [0.1, 10]^8, parts 1 through 5. (For parts 6 through 10, see Dataset 4H.5.)
DOI: 10.17632/766mchyxh4
title: Entrainment frequency of cardiolocomotor synchronization in distance running
DOI: 10.17632/dydmzyx5c6
title: Data for: Transformation of Ni-containing birnessite to tectomanganate: Influence and fate of weakly bound Ni(II) species

description: Data for the Ms by Wu and co-authors on the transformation of Ni-rich phyllomanganates upon reflux and on the fate of Ni during this transformation
DOI: 10.17632/hcxp9d4zkf
title: Genome-wide analysis of DNA uptake by naturally competent Haemophilus influenzae

description: This is the data associated with our paper "Genome-wide analysis of DNA uptake by naturally competent Haemophilus influenzae". The paper used an innovative application of deep sequencing to measure how Haemophilus influenzae takes up genomic fragments. Files attached are the raw sequencing files in fastq formoat of the sequenced Haemophilus influenzae genomic DNA from 86-028NP and PittGG strains sheared into two size distributions and recovered from competent H. influenzae Rd KW20. We used this data to built genomic maps of DNA uptake, which were compared to our predicted uptake calculated using a computational model. This comparison allowed us to increase our understanding of factors explaining differences in uptake of DNA fragments. DNA uptake in Haemophilus influenzae depends on the uptake machinery binding to a short DNA sequence denominated "USS". Our paper was able to show that genomic regions with high and low uptake had USS with distinct DNA-shape, suggesting that shape might have a role in DNA-binding. Preprint of the paper can be found in the link below: https://www.biorxiv.org/content/10.1101/866426v1