cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4585495
title: Data related to article "Sialic Acids as Receptors for Pathogens"

description: Data associated with Figure 3 from the article <strong>Sialic Acids as Receptors for Pathogens</strong> published in the journal <em>Biomolecules</em> (available here). Corrected the species list from previous version.
DOI: 10.6084/m9.figshare.14717061.v1
title: 500 dereplicated_genomes

description: <b>500 metagenome-assembled microbial genomes from 30 subtropical estuaries in South China</b>
DOI: 10.5281/zenodo.4892851
title: BLAST database of human genome used by the RECoVERY pipeline

description: BLAST database of human genome used by the RECoVERY pipeline available at https://github.com/aknijn/recovery-galaxy. A description of the pipeline is available in preprint: https://doi.org/10.1101/2021.01.16.425365
DOI: 10.5281/zenodo.4892850
title: BLAST database of human genome used by the RECoVERY pipeline

description: BLAST database of human genome used by the RECoVERY pipeline available at https://github.com/aknijn/recovery-galaxy. A description of the pipeline is available in preprint: https://doi.org/10.1101/2021.01.16.425365
DOI: 10.6084/m9.figshare.14717489.v1
title: Supplementary Information 6 from Is the diatom sex clock a clock?

description: Table of Simulation Results
DOI: 10.5281/zenodo.4892876
title: Original data for article: Microplastics accumulate to thin layers in the stratified Baltic Sea

description: <strong>Description of the data and files</strong>: The data was created in 2019-2020 and opened in 2021. The dataset consists of two Excel files: BalticSeaMIF_sampling.xlsx contains information about sampling, including coordinates of the sampling sites, depths and volumes of the samples, and as background information CTD (conductivity-temperature-depth) measurements from each sampling site. BalticSeaMIF_rawdata.xlsx contains raw data from the FPA-FTIR measurements. Raw data includes numbers, mass estimations, polymer types, and sizes of microplastics. Additionally, calculations for the background corrected numbers and mass estimations of microplastics per sample are provided. <strong>Creation and processing of the data</strong>: Data is created by measuring pre-treated and filtered water samples with FPA-FTIR and analysing the spectral data with siMPle (Primpke et al. <strong>2020</strong>, <em>Applied Spectroscopy</em>, 74, 1127-1138, https://doi.org/10.1177/0003702820917760). Please see the related article for more details about the methods and results. <strong>Purpose and use of the data</strong>: Data is published under Creative Commons CC-BY 4.0 license. Data may be useful for comparisons between datasets and meta-analyses of microplastic concentrations in various environments.
description: Funders: The Academy of Finland (MIF, no 296169) and The Finnish Foundation for Nature Conservation (Rafael Kuusakoski memorial fund).
DOI: 10.5281/zenodo.4892875
title: Original data for article: Microplastics accumulate to thin layers in the stratified Baltic Sea

description: <strong>Description of the data and files</strong>: The data was created in 2019-2020 and opened in 2021. The dataset consists of two Excel files: BalticSeaMIF_sampling.xlsx contains information about sampling, including coordinates of the sampling sites, depths and volumes of the samples, and as background information CTD (conductivity-temperature-depth) measurements from each sampling site. BalticSeaMIF_rawdata.xlsx contains raw data from the FPA-FTIR measurements. Raw data includes numbers, mass estimations, polymer types, and sizes of microplastics. Additionally, calculations for the background corrected numbers and mass estimations of microplastics per sample are provided. <strong>Creation and processing of the data</strong>: Data is created by measuring pre-treated and filtered water samples with FPA-FTIR and analysing the spectral data with siMPle (Primpke et al. <strong>2020</strong>, <em>Applied Spectroscopy</em>, 74, 1127-1138, https://doi.org/10.1177/0003702820917760). Please see the related article for more details about the methods and results. <strong>Purpose and use of the data</strong>: Data is published under Creative Commons CC-BY 4.0 license. Data may be useful for comparisons between datasets and meta-analyses of microplastic concentrations in various environments.
description: Funders: The Academy of Finland (MIF, no 296169) and The Finnish Foundation for Nature Conservation (Rafael Kuusakoski memorial fund).
DOI: 10.17036/researchdata.aston.ac.uk.00000499
title: Polarisation-insensitive fibre optic parametric amplification of 50x100GHz spaced channels across 40nm
DOI: 10.6084/m9.figshare.14717432.v1
title: Supplementary Table 1 and 2 from Sex-biased gene expression and recent sex chromosome turnover

description: Cichlids are well known for their propensity to radiate generating arrays of morphologically and ecologically diverse species in short evolutionary time. Following this rapid evolutionary pace, cichlids show high rates of sex chromosome turnover. We here studied the evolution of sex-biased gene (SBG) expression in 14 recently diverged taxa of the Lake Tanganyika Tropheini cichlids, which show different XY sex chromosomes. Across species, sex chromosome sequence divergence predates divergence in expression between the sexes. Only one sex chromosome, the oldest, showed signs of demasculinization in gene expression and potentially contribution to the resolution of sexual conflict. SBGs in general showed high rates of turnovers and evolved mostly under drift. Sexual selection did not shape the rapid evolutionary changes of SBGs. Male-biased genes evolved faster than female-biased genes, which seem to be under more phylogenetic constraint. We found a relationship between the degree of sex bias and sequence evolution driven by sequence differences among the sexes. Consistent with other species, strong sex bias towards sex-limited expression contributes to resolving sexual conflict in cichlids.This article is part of the theme issue ‘Challenging the paradigm in sex chromosome evolution: empirical and theoretical insights with a focus on vertebrates (Part II)’.
DOI: 10.6084/m9.figshare.14717417.v1
title: Supplementary Table of the extent of genetic degeneration in taxa with quantitative data;* PTB-template (revised2,changes tracked) from The timing of genetic degeneration of sex chromosomes

description: For review only
DOI: 10.6084/m9.figshare.14717411.v1
title: Data of UV-Vis desorption studies. from Eggshell as a biomaterial can have a sorption capability on its surface: A spectroscopic research

description: Detailed of the desorption study is presented in the appendix.
DOI: 10.6084/m9.figshare.14717408.v1
title: FTIR spectrum data of samples from Eggshell as a biomaterial can have a sorption capability on its surface: A spectroscopic research

description: Since there are many FTIR spectra, the data is presented in the appendix.
DOI: 10.6084/m9.figshare.14717402.v1
title: Data of UV-Vis adsorption studies from Eggshell as a biomaterial can have a sorption capability on its surface: A spectroscopic research

description: Detailed of the adsorption study is presented in the appendix.
DOI: 10.6084/m9.figshare.14717314.v1
title: LF_appendix_2_florivory_analyses from Florivory of Early Cretaceous flowers by functionally diverse insects: implications for early angiosperm pollination

description: The R code text files and Excel data tables.
DOI: 10.5281/zenodo.4892913
title: Historical land surface albedo changes in China

description: Land surface albedo is a critical parameter of the Earth’s energy budget, and has been greatly altered by climate change and human activities. The recent changes in land surface albedo can be monitored by satellite observations. However, because land surface albedo before the satellite era cannot be directly acquired by measurements, historical land surface albedo changes must be obtained using reconstructions and model simulations. To improve our understanding of historical land surface albedo changes and their climatic effects, we reconstructed land surface albedo in China from 850 to 2015 using the historical land use harmonization version 2 (LUH2) dataset and albedo look-up maps. The reconstructed dataset of annual-mean land surface albedo in China from 850 to 2015 was stored with the TIFF format. A total number of 1166 TIFF files can be find in the uploaded RAR file.
DOI: 10.5281/zenodo.4646703
title: Historical land surface albedo changes in China

description: Land surface albedo is a critical parameter of the Earth’s energy budget, and has been greatly altered by climate change and human activities. The recent changes in land surface albedo can be monitored by satellite observations. However, because land surface albedo before the satellite era cannot be directly acquired by measurements, historical land surface albedo changes must be obtained using reconstructions and model simulations. To improve our understanding of historical land surface albedo changes and their climatic effects, we reconstructed land surface albedo in China from 850 to 2015 using the historical land use harmonization version 2 (LUH2) dataset and albedo look-up maps. The reconstructed dataset of annual-mean land surface albedo in China from 850 to 2015 was stored with the TIFF format. A total number of 1166 TIFF files can be find in the uploaded RAR file.
DOI: 10.6084/m9.figshare.14717311.v1
title: LF_appendix_1_flower_description_xls from Florivory of Early Cretaceous flowers by functionally diverse insects: implications for early angiosperm pollination

description: The the descriptions and other data of the flower/infructescence morphotypes/species.
DOI: 10.6084/m9.figshare.14717489
title: Supplementary Information 6 from Is the diatom sex clock a clock?

description: Table of Simulation Results
DOI: 10.6084/m9.figshare.14717432
title: Supplementary Table 1 and 2 from Sex-biased gene expression and recent sex chromosome turnover

description: Cichlids are well known for their propensity to radiate generating arrays of morphologically and ecologically diverse species in short evolutionary time. Following this rapid evolutionary pace, cichlids show high rates of sex chromosome turnover. We here studied the evolution of sex-biased gene (SBG) expression in 14 recently diverged taxa of the Lake Tanganyika Tropheini cichlids, which show different XY sex chromosomes. Across species, sex chromosome sequence divergence predates divergence in expression between the sexes. Only one sex chromosome, the oldest, showed signs of demasculinization in gene expression and potentially contribution to the resolution of sexual conflict. SBGs in general showed high rates of turnovers and evolved mostly under drift. Sexual selection did not shape the rapid evolutionary changes of SBGs. Male-biased genes evolved faster than female-biased genes, which seem to be under more phylogenetic constraint. We found a relationship between the degree of sex bias and sequence evolution driven by sequence differences among the sexes. Consistent with other species, strong sex bias towards sex-limited expression contributes to resolving sexual conflict in cichlids.This article is part of the theme issue ‘Challenging the paradigm in sex chromosome evolution: empirical and theoretical insights with a focus on vertebrates (Part II)’.
DOI: 10.6084/m9.figshare.14717417
title: Supplementary Table of the extent of genetic degeneration in taxa with quantitative data;* PTB-template (revised2,changes tracked) from The timing of genetic degeneration of sex chromosomes

description: For review only
DOI: 10.6084/m9.figshare.14717411
title: Data of UV-Vis desorption studies. from Eggshell as a biomaterial can have a sorption capability on its surface: A spectroscopic research

description: Detailed of the desorption study is presented in the appendix.
DOI: 10.6084/m9.figshare.14717408
title: FTIR spectrum data of samples from Eggshell as a biomaterial can have a sorption capability on its surface: A spectroscopic research

description: Since there are many FTIR spectra, the data is presented in the appendix.
DOI: 10.6084/m9.figshare.14717402
title: Data of UV-Vis adsorption studies from Eggshell as a biomaterial can have a sorption capability on its surface: A spectroscopic research

description: Detailed of the adsorption study is presented in the appendix.
DOI: 10.6084/m9.figshare.14717369
title: Supplementary Information from The evolution of trait correlations constrains phenotypic adaptation to high CO<sub>2</sub> in a eukaryotic alga

description: Ancestral and Evolved empirical data
DOI: 10.6084/m9.figshare.3761562.v1885
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.14717320
title: Supplemental_Data_Final from Does leaving water make fish smarter? Terrestrial exposure and exercise improve spatial learning in an amphibious fish

description: Supplemental Data
DOI: 10.6084/m9.figshare.14717314
title: LF_appendix_2_florivory_analyses from Florivory of Early Cretaceous flowers by functionally diverse insects: implications for early angiosperm pollination

description: The R code text files and Excel data tables.
DOI: 10.6084/m9.figshare.14717311
title: LF_appendix_1_flower_description_xls from Florivory of Early Cretaceous flowers by functionally diverse insects: implications for early angiosperm pollination

description: The the descriptions and other data of the flower/infructescence morphotypes/species.
DOI: 10.17036/researchdata.aston.ac.uk.00000500
title: First Experimental Mach-Zehnder FOPA for Polarization- and Wavelength-Division-Multiplexed Signals
DOI: 10.5257/oecd/prod/2021q1
title: Productivity Statistics (2021Q1 Edition)

description: The Productivity Statistics database includes indicators on labour productivity, multi-factor productivity (MFP) and capital services. It also includes OECD estimates of labour productivity levels and a breakdown of gross domestic product (GDP) per capita in its components. Data are internationally comparable.
DOI: 10.6084/m9.figshare.14717334
title: Supplementary Material for: Association with Longevity of Phosphatidylinositol 3-Kinase Regulatory Subunit 1 Gene Variants Stems from Protection against Mortality Risk in Men with Cardiovascular Disease

description: <b><i>Introduction:</i></b> Genetic variation in the phosphatidylinositol 3-kinase reregulatory subunit 1 gene (<i>PIK3R1</i>) is associated with longevity. <b><i>Objective:</i></b> The aim of the study was to determine whether cardiovascular disease (CVD) affects this association. <b><i>Methods:</i></b> We performed a longitudinal study of longevity-associated <i>PIK3R1</i> single-nucleotide polymorphism <i>rs7709243</i> genotype by CVD status in 3,584 elderly American men of Japanese ancestry. <b><i>Results:</i></b> At baseline (1991–1993), 2,254 subjects had CVD and 1,314 did not. The follow-up until Dec 31, 2019 found that overall, men with a CVD had higher mortality than men without a CVD (<i>p</i> = 1.7 × 10<sup>−5</sup>). However, survival curves of CVD subjects differed according to <i>PIK3R1</i> genotype. Those with longevity-associated <i>PIK3R1 TT</i>/<i>CC</i> had survival curves similar to those of subjects without a CVD (<i>p</i> = 0.11 for <i>TT</i>/<i>CC</i>, and <i>p</i> = 0.054 for <i>TC</i>), whereas survival curves for CVD subjects with the <i>CT</i> genotype were significantly attenuated compared with survival curves of subjects without a CVD (<i>p</i> = 0.0000012 compared with <i>TT</i>/<i>CC</i>, and <i>p</i> = 0.0000028 compared with <i>TC</i>). Men without CVD showed no association of longevity-associated genotype with life span (<i>p</i> = 0.58). Compared to subjects without any CVD, hazard ratios for mortality risk were 1.26 (95% CI, 1.14–1.39; <i>p</i> = 0.0000043) for <i>CT</i> subject with CVD and 1.07 (95% CI 0.99–1.17; <i>p</i> = 0.097) for <i>CC</i>/<i>TT</i> subjects with CVD. There was no genotypic effect on life span for 1,007 subjects with diabetes and 486 with cancer. <b><i>Conclusion:</i></b> Our study provides novel insights into the basis for <i>PIK3R1</i> as a longevity gene. We suggest that the <i>PIK3R1</i> longevity genotype attenuates mortality risk in at-risk individuals by protection against cellular stress caused by CVD.
DOI: 10.6084/m9.figshare.14717586
title: Supplementary Material for: Safety of Kidney Biopsy when Performed as an Outpatient Procedure

description: <b><i>Introduction:</i></b> Kidney biopsy remains the gold standard for the diagnosis of most renal diseases. A major obstacle to performing a biopsy is safety concerns. However, many safety measures are not evidence based and therefore vary widely between centers. We sought to determine the rate and timing of kidney biopsy complications in our center, to compare the complication rate between native and transplant kidney biopsies, to evaluate the feasibility of performing kidney biopsies as an outpatient procedure and the value of a postbiopsy ultrasound before discharge, and to identify risk factors for complications. <b><i>Methods:</i></b> We performed a single-center, retrospective, observational study at the Division of Nephrology of the University Hospital Zurich including all patients who underwent renal biopsy between January 2005 and December 2017. Major bleeding (primary outcome) and any other bleeding or nonbleeding complications (secondary outcomes) were compared between native and transplant kidney biopsies and between inpatient and outpatient procedures and correlated with clinical factors possibly affecting bleeding risk. <b><i>Results:</i></b> Overall, 2,239 biopsies were performed in 1,468 patients, 732 as inpatient and 1,507 as outpatient procedures. Major bleeding was observed in 28 (3.8%) inpatient and in 15 (1.0%) outpatient procedures, totaling to 43 (1.9%) of all biopsies. Major bleeding requiring intervention amounted to 1.0% (0.5% of outpatient procedures). Rate of major bleeding was similar between native and transplant kidneys. 13/15 (87%) bleeding episodes in planned outpatient procedures were detected during the 4-h surveillance period. Risk factors for bleeding were aspirin use, low eGFR, anemia, cirrhosis, and amyloidosis. Routine postbiopsy ultrasound did not change management. <b><i>Conclusions:</i></b> Kidney biopsy is an overall safe procedure and can be performed as an outpatient procedure in most patients with an observation period as short as 4 h. The value of routine postbiopsy ultrasound is questionable.
DOI: 10.6084/m9.figshare.14717586.v1
title: Supplementary Material for: Safety of Kidney Biopsy when Performed as an Outpatient Procedure

description: <b><i>Introduction:</i></b> Kidney biopsy remains the gold standard for the diagnosis of most renal diseases. A major obstacle to performing a biopsy is safety concerns. However, many safety measures are not evidence based and therefore vary widely between centers. We sought to determine the rate and timing of kidney biopsy complications in our center, to compare the complication rate between native and transplant kidney biopsies, to evaluate the feasibility of performing kidney biopsies as an outpatient procedure and the value of a postbiopsy ultrasound before discharge, and to identify risk factors for complications. <b><i>Methods:</i></b> We performed a single-center, retrospective, observational study at the Division of Nephrology of the University Hospital Zurich including all patients who underwent renal biopsy between January 2005 and December 2017. Major bleeding (primary outcome) and any other bleeding or nonbleeding complications (secondary outcomes) were compared between native and transplant kidney biopsies and between inpatient and outpatient procedures and correlated with clinical factors possibly affecting bleeding risk. <b><i>Results:</i></b> Overall, 2,239 biopsies were performed in 1,468 patients, 732 as inpatient and 1,507 as outpatient procedures. Major bleeding was observed in 28 (3.8%) inpatient and in 15 (1.0%) outpatient procedures, totaling to 43 (1.9%) of all biopsies. Major bleeding requiring intervention amounted to 1.0% (0.5% of outpatient procedures). Rate of major bleeding was similar between native and transplant kidneys. 13/15 (87%) bleeding episodes in planned outpatient procedures were detected during the 4-h surveillance period. Risk factors for bleeding were aspirin use, low eGFR, anemia, cirrhosis, and amyloidosis. Routine postbiopsy ultrasound did not change management. <b><i>Conclusions:</i></b> Kidney biopsy is an overall safe procedure and can be performed as an outpatient procedure in most patients with an observation period as short as 4 h. The value of routine postbiopsy ultrasound is questionable.
DOI: 10.15468/zvpd2r
title: Taxonomy of tropical West African bivalves. VI. Remarks on Lucinidae (Mollusca, Bivalvia), with description of six new genera and eight new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cosel, Rudo von (2006): Taxonomy of tropical West African bivalves. VI. Remarks on Lucinidae (Mollusca, Bivalvia), with description of six new genera and eight new species. Zoosystema 28 (4): 805-851, DOI: http://doi.org/10.5281/zenodo.4689802
DOI: 10.6084/m9.figshare.14717607
title: Supplementary Material for: Association between Circulating Protein C Levels and Incident Dementia: The Atherosclerosis Risk in Communities Study

description: <b><i>Introduction:</i></b> Hemostasis depends on the delicate balance between coagulants and anticoagulants. Higher levels of circulating coagulants have been associated with higher risk of cerebral infarctions and dementia. In contrast, higher levels of circulating protein C, an endogenous anticoagulant, have been associated with lower risk of cerebral infarctions, and the association between protein C levels and the risk of dementia is unknown. The goal of this study was to evaluate the association of circulating protein C levels in midlife and late life with incident dementia. <b><i>Methods:</i></b> Circulating protein C levels were measured using blood samples collected at the midlife baseline (1987–1989) and the late-life baseline (2011–2013) among 14,462 and 3,614 participants, respectively, in the Atherosclerosis Risk in Communities study. Protein C levels were measured using enzyme-linked immunosorbent assay at midlife and a modified aptamer-based assay at late life. Participants were followed up to 2013 from midlife and up to 2017 from late life. Incident dementia was ascertained during the follow-up periods using in-person cognitive and functional assessment, informant interviews, and International Classification of Diseases codes at hospitalization discharge and on death certificates. Cause-specific Cox regression models were used to evaluate the association between quintiles of circulating protein C and incident dementia. <b><i>Results:</i></b> From midlife (mean age of 54), 1,389 incident dementia events were observed over a median follow-up of 23 years. From late life (mean age of 75), 353 incident dementia events were observed over a median follow-up of 4.9 years. At both midlife and late life, circulating protein C had an inverse association with incident dementia after adjusting for demographic, vascular, and hemostatic risk factors, incident stroke as time-dependent covariate, and incorporating stabilized weights based on propensity scores (quintile 5 vs. quintile 1 as the reference, midlife hazard ratio 0.80, 95% confidence interval 0.66–0.96, <i>p</i> value for trend 0.04; late-life hazard ratio 0.84, 95% confidence interval: 0.55–1.28, <i>p</i> value for trend 0.04). <b><i>Discussion/Conclusion:</i></b> Circulating protein C has an inverse association with incident dementia independent of established risk factors, including stroke. Our results suggest studying anticoagulants in addition to coagulants can increase our understanding on the relationship between hemostasis and dementia.