cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0vt4b8gwr
title: Poisson models for publications, leadership and recognition awards in the American Academy of Neurology

description: We sought to study sex with respect to publications, leadership and
 recognition awards in the American Academy of Neurology (AAN) in light of
 recent research highlighting inequities in these domains.
 Methods:  We examined medical school graduation, neurology
 residency (using American Medical Association and the American Council for
 Graduate Medical Education), membership in the AAN, first and last
 authorship in Neurology, membership on AAN committees, and AAN recognition
 awards, by sex, in 1997, 2007, 2017.  Results:  Female
 medical students were less likely to enter neurology residency in 1997
 only.  In 2007 and 2017, there was no proportionate difference
 between men and women as last author, a surrogate for senior member of the
 author panel.  In 2017, women were proportionately more likely to
 be first authors than men, a surrogate for principal investigator of the
 study.  Committee membership was less for women in 1997 and 2007
 (P &lt;0.001) but was not proportionately different in 2017
 (P=0.534).  Women were proportionately more likely to receive
 recognition awards in all years studied (1997 p=0.008, 2007
 p&lt;0.001. 2017 p &lt;0.001) although absolute numbers of women
 were less. Conclusions:  Female membership, leadership (through
 committee membership), publications as last author were less in 1997 in
 the AAN.  These same metrics demonstrated substantial
 proportionate changes, with no differences in last author in 2007 and
 2017, greater likelihood for women to be first author in 2017, no
 differences in committee membership in 2017 and greater likelihood of
 receiving  awards determined by merit in all three
 years.   
description: The data are Poisson models
DOI: 10.15468/dl.wffxtn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mollusc collection at Museum of New Zealand Te Papa Tongarewa"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002463-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.95x69p8h8
title: Phylogeny estimation given sequence length heterogeneity

description: Abstract Phylogeny estimation is a major step in many biological studies,
 and has many well known challenges. With the dropping cost of sequencing
 technologies, biologists now have increasingly large datasets available
 for use in phylogeny estimation. Here we address the challenge of
 estimating a tree given large datasets with a combination of full-length
 sequences and fragmentary sequences, which can arise due to a variety of
 reasons, including sample collection, sequencing technologies, and
 analytical pipelines. We compare two basic approaches: (1) computing an
 alignment on the full dataset and then computing a maximum likelihood tree
 on the alignment, or (2) constructing an alignment and tree on the full
 length sequences and then using phylogenetic placement to add the
 remaining sequences (which will generally be fragmentary) into the tree.
 We explore these two approaches on a range of simulated datasets, each
 with 1000 sequences and varying in rates of evolution, and two biological
 datasets. Our study shows some striking performance differences between
 methods, especially when there is substantial sequence length
 heterogeneity and high rates of evolution. We find in particular that
 using UPP to align sequences and RAxML to compute a tree on the alignment
 provides the best accuracy, substantially outperforming trees computed
 using phylogenetic placement methods. We also find that FastTree has poor
 accuracy on alignments containing fragmentary sequences. Overall, our
 study provides insights into the literature comparing different methods
 and pipelines for phylogenetic estimation, and suggests directions for
 future method development.
DOI: 10.5061/dryad.bzkh1896h
title: Species richness and abundance of vascular epiphytes along an elevation gradient

description: Because of the difficulty in sampling and the logistics of identifying
 canopy-dwelling plants, the number of inventories quantifying tropical
 epiphytes is limited. This has resulted in a substantial gap in knowledge,
 even though forest canopies contain significant biodiversity and forest
 biomass. In the case of Volcán Maderas, multiple ecological and
 taxonomic research initiatives have been conducted. However, for vascular
 epiphytes, georeferenced specific spatial descriptions were lacking and a
 standardized effort for documenting species richness was non-existent. We
 provide a detailed qualitative and quantitative assessment of the vascular
 epiphyte flora and its spatial distribution. These data shed light on
 important plant assemblages across elevational gradients that can be used
 for monitoring and understanding adaptive strategies to drought
 conditions.
description: Along the Mérida Trail on the west slope of the volcano, we
 selected eight mature canopy trees from each of the five forest habitats.
 All eight trees in each forest type were sampled within 1 ha along the
 elevational gradient of the volcano, following the protocol described by
 Gradstein et al. Although [32] suggested to employ the single rope
 technique for tree sampling, 80% of the trees were surveyed from the
 ground on a slope for easier visualization, using binoculars or through a
 high-resolution camera with a zoom feature (Panasonic Lumix DMC-FZ70 16.1
 MP Digital Camera with 60x Optical Image). All of the trees were intensely
 photographed and videoed. Gradstein SR, Nadkarni NM, Krömer
 T, Holz I, Nöske N. A protocol for rapid and representative sampling of
 vascular and non-vascular epiphyte diversity of tropical rain forests.
 Selbyana. 2003;24: 190–195.
DOI: 10.5281/zenodo.18395746
title: Source Data: Mitigating Stainless Steel Dissolution in LiFSI-based Electrolytes: Insights into Dissolution Mechanisms and Enhancing Cycle Life in Lithium-ion Batteries

description: These are the 2nd version source data for the paper: Mitigating Stainless Steel Dissolution in LiFSI-based Electrolytes: Insights into Dissolution Mechanisms and Enhancing Cycle Life in Lithium-ion Batteries
Source Data Figure 1,3 and 7 are updated compared to version 1.Source data for the figures displayed in the main text are provided. In addition, the most relevant files to reproduce the DFT calculation are also provided

Here needs to be noticed for the DFT calculation:

The initial CONTCAR structure (first folder) was based on the experimental structure optimized by DFT. This file is converted by the Python script, which can be called via

python vasp2groions.py CONTCAR LiFSI.pdb 2.0

where the last value specifies the distance by which the ion pair is placed above the Fe2O3 surface.

Subsequently, the thus obtained .gro files can be used in GROMACS (see example of cooling simulation in second folder).
DOI: 10.5281/zenodo.16813415
title: Source Data: Mitigating Stainless Steel Dissolution in LiFSI-based Electrolytes: Insights into Dissolution Mechanisms and Enhancing Cycle Life in Lithium-ion Batteries

description: These are the 2nd version source data for the paper: Mitigating Stainless Steel Dissolution in LiFSI-based Electrolytes: Insights into Dissolution Mechanisms and Enhancing Cycle Life in Lithium-ion Batteries
Source Data Figure 1,3 and 7 are updated compared to version 1.Source data for the figures displayed in the main text are provided. In addition, the most relevant files to reproduce the DFT calculation are also provided

Here needs to be noticed for the DFT calculation:

The initial CONTCAR structure (first folder) was based on the experimental structure optimized by DFT. This file is converted by the Python script, which can be called via

python vasp2groions.py CONTCAR LiFSI.pdb 2.0

where the last value specifies the distance by which the ion pair is placed above the Fe2O3 surface.

Subsequently, the thus obtained .gro files can be used in GROMACS (see example of cooling simulation in second folder).
DOI: 10.5061/dryad.gxd2547j8
title: Skin morphology in cane toads

description: The structure of the skin may evolve rapidly during a biological invasion,
 for two reasons. First, novel abiotic challenges such as hydric conditions
 may modify selection on traits (such as skin thickness) that determine
 rates of evaporative water loss. Second, invaders might benefit from
 enhanced rates of dispersal, with locomotion possibly facilitated by
 thinner (and hence more flexible) skin. We quantified thickness of layers
 of the skin in cane toads (Rhinella marina) from the native range
 (Brazil), a stepping-stone population (Hawai’i), and the invaded range in
 Australia. Overall, the skin is thinner in cane toads in Australia than in
 the native range, consistent with selection on mobility. However, layers
 that regulate water exchange (epidermal stratum corneum and dermal Ground
 Substance layer) are thicker in Australia, retarding water loss in hot dry
 conditions. Within Australia, epidermal thickness increased as the toads
 colonised more arid regions, but then decreased in the arid Kimberley
 region. That curvilinearity might reflect spatial sorting, whereby mobile
 (thin-skinned) individuals dominate the invasion front; or the toads’
 restriction to moist sites in this arid landscape may reduce the
 importance of water-conservation. Further work is needed to clarify the
 roles of adaptation versus phenotypic plasticity in generating the strong
 geographic variation in skin structure among populations of cane toads.
description: Histological examination
DOI: 10.5061/dryad.kwh70rz1x
title: Resilience and alternative stable states after desert wildfires

description: Improving models of community change is a fundamental goal in ecology and
 has renewed importance during global change and increasing human
 disturbance of the biosphere.  Using the Mojave Desert
 (southwestern USA) as a model system, invaded by non-native plants and
 subject to wildfire disturbances, we examined models of resilience,
 alternative stable states, and convergent-divergent trajectories for 36
 years of plant community change after 31 wildfires in communities
 dominated by the native shrubs Larrea tridentata or Coleogyne
 ramosissima.  Perennial species richness on average was fully
 resilient within 23 years after disturbance in both community
 types.  Perennial cover was fully resilient within 25 years in
 the Larrea community, but recovery was projected to require 52 years in
 the Coleogyne community.  Species composition shifts were
 persistent, and in the Coleogyne community, the projected compositional
 recovery time of 550 years and increasing resembled a deflected trajectory
 toward potential alternative states.  Disturbed sites contained a
 perennial species composition of predominately short-statured forbs,
 subshrubs, and grasses, contrasting with the larger-statured shrub and
 tree structure of undisturbed sites.  Auxiliary datasets
 characterizing species recruitment, annual plants including non-native
 grasses, biocrust communities, and soils showed persistent differences
 between disturbed and undisturbed sites consistent with positive feedbacks
 potentially contributing to alternative stable states. 
 Resprouting produced limited resilience for the large shrubs Larrea
 tridentata and Yucca spp. important to population persistence, but did not
 forestall long-term reduced abundance of the species.  The
 non-native annual grass Bromus rubens increased on disturbed sites over
 time, suggesting persistently abundant non-native plant fuels and reburn
 potential.  Biocrust cover on disturbed sites was half and
 species richness a third of amounts on undisturbed sites.  Soil
 nitrogen was 30% greater on disturbed sites and no significant trend was
 evident for it to decline on even the oldest burns.  Disturbed
 desert plant communities simultaneously supported all three models of
 resilience, alternative stable states, and convergent-divergent
 trajectories among community measures (e.g., species richness,
 composition), timeframes since disturbance, and spatial
 resolutions.  Accommodating expression within ecosystems of
 multiple models, including those opposing each other, may help broaden
 theoretical models of ecosystem change.
description: Methods are documented in the associated paper.
DOI: 10.5061/dryad.sj3tx962q
title: Patterns of niche contraction identify vital refuge areas for declining mammals

description: Aim Investigation of realised niche contraction in declining species can
 help us understand how and where threats are being either mediated or
 tolerated across landscapes. It also provides insights into species’
 sensitivity to environmental change that are unable to be identified
 through analysis of declines in range size or abundance alone. Here, we
 apply the recently proposed ‘niche reduction hypothesis’ to investigate
 relationships between trends in niche breadth and geographic distribution
 of declining species. Location Northern Australia Methods We compare and
 contrast contemporary and historical datasets to examine the relationship
 between extent of occurrence (EOO) and realised niche hypervolume, and
 investigate changes in species’ utilisation of environmental space through
 time via generalised linear modelling and bootstrapping of historical
 values. We also use the ‘Maxent’ algorithm to create and stack
 contemporary and historical ecological niche models (ENMs) and identify
 regions where resilience to threatening processes is maximised. Results We
 found larger mean reductions in niche hypervolume (39%) than EOO (30.5%),
 with little correlation (r = 0.07) between the two measures, suggesting
 that contraction of realised niche breadth can be largely independent of
 reduction in EOO. We also identified a general set of environmental
 conditions towards which species’ realised niches contracted. Comparison
 of stacked ENMs allowed us to identify regions of natural refuge where
 environmental conditions are associated with increased species resilience
 to threats, and conversely, regions where habitat suitability has
 declined. Main conclusions Examining species declines from an ecological
 niche perspective provides a powerful tool for understanding how
 environmental conditions, biotic interactions, and species traits shape
 responses to local and global environmental changes. Quantifying
 reductions in niche breadth is crucial as contraction to a narrower subset
 of environmental space can reduce a species’ ability to tolerate other
 threats and potentially lower adaptive capacity and genetic diversity,
 increasing extinction risk.
description: We extracted all occurrences of each target species from the
 Atlas of Living Australia (ALA, https://www.ala.org.au/) and NR Maps (https://nrmaps.nt.gov.au/nrmaps.html) databases, using the year 1900 as a standard baseline. Filtering and analysis steps have been described in the methods section of the published manuscript.
DOI: 10.5281/zenodo.18394273
title: SEM micrograph dataset of Elaphomyces spores for AI-based species identification

description: This dataset contains high-resolution scanning electron microscopy (SEM)micrographs of Elaphomyces ascospores representing multiple morphologicallysimilar species. A total of 640 raw TIFF images were acquired understandardized imaging conditions to ensure consistency and comparability.The dataset was generated to support artificial intelligence–basedidentification and classification studies of Elaphomyces species andincludes species-specific folders and accompanying metadata.
DOI: 10.5281/zenodo.18395220
title: SEM micrograph dataset of Elaphomyces spores for AI-based species identification

description: This dataset contains high-resolution scanning electron microscopy (SEM)micrographs of Elaphomyces ascospores representing multiple morphologicallysimilar species. A total of 640 raw TIFF images were acquired understandardized imaging conditions to ensure consistency and comparability.The dataset was generated to support artificial intelligence–basedidentification and classification studies of Elaphomyces species andincludes species-specific folders and accompanying metadata.
DOI: 10.25338/b8bw42
title: Divergent processes drive parallel evolution in marine and freshwater fishes

description: Evolutionary comparisons between major environmental divides, such as
 between marine and freshwater systems, can reveal the fundamental
 processes governing diversification dynamics. Although processes may
 differ due to the different scales of their biogeographic barriers,
 freshwater and marine environments nevertheless offer similar
 opportunities for diversification in benthic, demersal, and pelagic
 habitats. Here, we compare the evolutionary patterns and processes shaping
 teleost diversity in each of these three habitats and between marine and
 freshwater systems. Using specimens from the National Museum of Natural
 History, we developed a data set of linear measurements capturing body
 shape in 2266 freshwater and 3344 marine teleost species. With a novel
 comparative approach, we contrast the primary axis of morphological
 diversification in each habitat with the major axis defined by
 phylogenetic signal. By comparing angles between these axes, we find that
 fish in corresponding habitats have more similar primary axes of
 morphological diversity than would be expected by chance, but that
 different historical processes underlie these parallel patterns in
 freshwater and marine environments. Marine diversification is more
 strongly aligned with phylogenetic signal and shows a trend toward
 lineages occupying separate regions of morphospace. In contrast,
 ecological signal appears to be a strong driver of diversification in
 freshwater lineages through repeated morphological evolution in densely
 packed regions of morphospace. In spite of these divergent histories, our
 findings reveal that habitat has driven convergent patterns of
 evolutionary diversification on a global scale.
DOI: 10.15468/dl.cu8x45
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Browneopsis excelsa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 54 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002476-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.9zw3r22bs
title: Leaf functional traits and insular colonization: subtropical islands as a melting pot of trait diversity in a widespread plant lineage

description: Aim: One of the main goals of functional biogeography is to examine
 distribution patterns of trait diversity, and islands provide excellent
 study cases for this emerging field. We tested the hypothesis that
 multiple dispersals from a common mainland pool would promote functional
 similarity among island systems when environmental conditions are similar,
 but also novel phenotypic traits related to colonization history and
 exploitation of new habitats. Location: Mediterranean Basin and
 Macaronesian islands Methods: We used the well-known
 biogeographical history of a woody plant complex (Periploca laevigata
 s.l.) to examine trait variation and how it relates to climatic conditions
 of mainland and subtropical island settings. In a common garden
 experiment, we measured a suite of leaf physiological and anatomical
 traits tightly related to plant performance in 320 seedlings representing
 21 populations of five sublineages: the oldest (2.6 my) island
 colonization (western Canary Islands) as a reference, three sublineages
 stemming from independent events of island colonization in the last 0.5 my
 from NW Africa (Cape Verde, Fuerteventura, Lanzarote), and their
 widespread Mediterranean mainland counterpart. Results: We observed strong
 phenotypic divergence between island and mainland sublineages linked to
 contrasting climatic conditions. Mediterranean mainland populations
 displayed a very specialized leaf phenotype characteristic of arid plants
 (i.e. small leaves, amphistomaty, isobilateral mesophyll, high
 photosynthetic rates). In turn, low seasonality on islands was linked to
 the recurrent expression of a phenotype characterized by larger leaves and
 lower photosynthetic rates. Our analyses showed that the high investment
 in secondary compounds (i.e. tannins) on islands decouples photosynthesis
 from growth rates. Despite this pattern of parallel differentiation, each
 island sublineage displayed a distinctive phenotype, with some traits
 related to colonization time, which resulted in a mosaic of functional
 variation across island systems. Main conclusions: Our data suggest that
 the studied subtropical islands promote expression of traits specific to
 certain sublineages and other common traits that are no untypeset proof
 Page 2 of 50 Journal of Biogeography longer adaptive in the original
 mainland pool due to Pleistocene climatic shifts. These findings
 ultimately extend the role of islands as biodiversity refugia and hotspots
 of plant functional diversity.
description: Leaf functional traits measured in 320 Periploca laevigata
 seedlings grown under common garden conditions.
DOI: 10.5517/ccdc.csd.cc2n3kmz
title: CCDC 2446291: Experimental Crystal Structure Determination

description: Related Article: Dexin Liu, Andrew Victoria, Alexander Mariscal, Jay Conces, Sandra Mampilly, Yunpeng Cui, Lukasz Wojtas, Jianfeng Cai, Wenqi Liu|2025|Chem.-Eur.J.|31|e03496|doi:10.1002/chem.202503496
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n3kn0
title: CCDC 2446292: Experimental Crystal Structure Determination

description: Related Article: Dexin Liu, Andrew Victoria, Alexander Mariscal, Jay Conces, Sandra Mampilly, Yunpeng Cui, Lukasz Wojtas, Jianfeng Cai, Wenqi Liu|2025|Chem.-Eur.J.|31|e03496|doi:10.1002/chem.202503496
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n3kp1
title: CCDC 2446293: Experimental Crystal Structure Determination

description: Related Article: Dexin Liu, Andrew Victoria, Alexander Mariscal, Jay Conces, Sandra Mampilly, Yunpeng Cui, Lukasz Wojtas, Jianfeng Cai, Wenqi Liu|2025|Chem.-Eur.J.|31|e03496|doi:10.1002/chem.202503496
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.