cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4982408.v1
title: Read-across of ready biodegradability based on the substrate specificity of <i>N</i>-alkyl polypropylene polyamine-degrading microorganisms

description: The biodegradation of <i>N</i>-alkyl polypropylene polyamines (NAPPs) was studied using pure and mixed cultures to enable read-across of ready biodegradability test results. Two <i>Pseudomonas</i> spp. were isolated from activated sludge with <i>N</i>-oleyl alkyl propylene diamine and <i>N</i>-coco alkyl dipropylene triamine, respectively. Both strains utilized all NAPPs tested as the sole source of carbon, nitrogen and energy for growth. Mineralization of NAPPs was independent of the alkyl chain length and the size of the polyamine moiety. NAPPs degraded in closed bottle tests (CBTs) using both river water and activated sludge. However, ready biodegradability of NAPPs with alkyl chain lengths of 16–18 carbon atoms and polyamine moieties with three and four nitrogen atoms could not be demonstrated. Biodegradation in the CBT was hampered by their limited bioavailability, making assessment of the true ready biodegradability of these highly adsorptive surfactants impossible. All NAPPs are therefore classified as readily biodegradable through read-across. Read-across is justified by the broad substrate specificity of NAPP-degrading microorganisms, their omnipresence and the mineralization of NAPPs.
DOI: 10.6084/m9.figshare.4982357
title: Camera trap, tracking plot and nest monitoring data 2014-2015 & 2015-2016

description: Camera trap, tracking plot and nest monitoring data to monitor who is the important nest predator at Wreck Rock beach
DOI: 10.6084/m9.figshare.4982267
title: AERSLD: Adverse Events as Linked Data (from AERS)

description: A linked data version of the AERS (currently FAERS) dataset of the US Food and Drug administration for the years 2005-2012. <br>The dataset has been linked to Drugbank, DBPedia (v3.7), Diseaseome, Sider, the NCI Thesaurus and the CTCAE ontology. <br>Code as part of the raw2ld v0.1 library (in aersld)<br>Original data CC0
DOI: 10.6084/m9.figshare.4982237
title: Solution method for a large-scale loom scheduling problem with machine eligibility and splitting property

description: In this paper, we focused on a real-life, large-scale problem of loom scheduling, which has 1100 independent jobs and 133 unrelated parallel machines with machine eligibility constraint. The authors focused on the scheduling problems that includes sequence-dependent setup times and the job splitting property to minimize the makespan. An adapted version of hybrid genetic algorithm in this study, incorporated a machine eligibility constraint. Adding this constraint complicated the problem, but doing so is compulsory to solve a real-life problem. To simplify the problem, we used the typesetting structure of the weaving industry. Utilizing random key numbers provided feasible chromosomes for each generation. Flexible chromosome structures and local search adaptation into the genetic algorithm were some of the other factors that allowed us to improve the makespan by up to 14% in this application.
DOI: 10.6084/m9.figshare.4982240
title: Exercise habits and factors associated with exercise in systemic sclerosis: a Scleroderma Patient-centered Intervention Network (SPIN) cohort study

description: <b>Objective:</b> Exercise is associated with improved health in many medical conditions. Little is known about the exercise habits of people with systemic sclerosis (SSc, or scleroderma). This study assessed the proportion of individuals with SSc who exercise and associations of demographic and disease variables with exercise. Additionally, the weekly amount of time spent exercising and the types of exercise performed were assessed among patients exercising. <b>Methods:</b> The sample consisted of adult participants with SSc enrolled in the Scleroderma Patient-centered Intervention Network (SPIN) Cohort who completed baseline questionnaires from March 2014 through August 2015. Baseline questionnaires included questions on exercise habits, physician-reported medical characteristics, self-report demographic characteristics, the Health Assessment Questionnaire-Disability Index, Patient Health Questionnaire-9, and Patient-Reported Outcomes Measurement Information System-29. <b>Results:</b> Of 752 patients, 389 (51.7%) reported presently engaging in exercise, and these patients exercised on average 4.7 h [standard deviation (SD) = 2.8] per week. Among patients who reported exercising, walking was most commonly reported (<i>n</i> = 295, 75.8%). In bivariate analyses, present exercise was associated with more education, lower body mass index, some (versus no) alcohol consumption, non-smoking, limited/sine disease subtype, absence of skin thickening, lower disability, higher physical function, lower symptoms of anxiety and depression, less fatigue, lower sleep disturbance, higher ability to participate in social roles and activities, and less pain. <b>Conclusions:</b> Approximately half of SSc patients reported that they are currently exercising with walking being the most common form of exercise. Understanding exercise patterns and factors associated with exercise will help better inform intervention programs to support exercise for patients with SSc.Implications for rehabilitationSystemic sclerosis is a rare autoimmune rheumatic disease associated with great morbidity and highly diverse presentation.Approximately half of people with both limited and diffuse systemic sclerosis report exercising.Most exercisers walk, but patients engage in a wide variety of exercise-related activities.Individually designed exercise programs are most likely to support and encourage exercise in patients with diverse disease manifestations. Systemic sclerosis is a rare autoimmune rheumatic disease associated with great morbidity and highly diverse presentation. Approximately half of people with both limited and diffuse systemic sclerosis report exercising. Most exercisers walk, but patients engage in a wide variety of exercise-related activities. Individually designed exercise programs are most likely to support and encourage exercise in patients with diverse disease manifestations.
DOI: 10.6084/m9.figshare.4982267.v1
title: AERSLD: Adverse Events as Linked Data (from AERS)

description: A linked data version of the AERS (currently FAERS) dataset of the US Food and Drug administration for the years 2005-2012. <br>The dataset has been linked to Drugbank, DBPedia (v3.7), Diseaseome, Sider, the NCI Thesaurus and the CTCAE ontology. <br>Code as part of the raw2ld v0.1 library (in aersld)<br>Original data CC0
DOI: 10.6084/m9.figshare.4982132.v1
title: Elevation under RCP4.5

description: projected elevation for the years 2016 to 2100 under RCP4.5<br>
DOI: 10.6084/m9.figshare.4982138.v1
title: Elevation under RCP6.0

description: projected elevation for the years 2016 to 2100 under RCP6.0<br>
DOI: 10.6084/m9.figshare.4982141.v1
title: Elevation under RCP8.5

description: projected elevation for the years 2016 to 2100 under RCP8.5<br>
DOI: 10.6084/m9.figshare.4982108
title: A laryngeal fibrous mass impacts the acoustics and attractiveness of a multicomponent call in túngara frogs (<i>Physalaemus pustulosus</i>)

description: The evolution of elaborate signals can emerge from changes in anatomical signaling structures. In the male túngara frog, a simple advertisement call (‘whine’) can be ornamented facultatively with a suffix (‘chuck’) to produce a more attractive complex call, or ‘whine-chuck’. A fibrous mass (FM1) supported by the vocal cords plays a role in chuck production. Here, we examine the effects of FM1 ablation on a large set of spectral and temporal features of both the whine and chuck and we test the hypothesis that FM1 ablation reduces call attractiveness to females. Both call components were impacted by FM1 ablation, but especially the suffix. The proportion of energy in the suffix’s odd compared to even harmonics diminished markedly as did the relative amplitude, effectively eliminating the chuck percept. FM1 ablation also reduced the whine’s frequency and its rate of frequency modulation. Moreover, post-surgery chucks no longer enhanced the attractiveness of the simple call and whines also appeared to diminish in attractiveness. Together, our results demonstrate that FM1 plays a role in the production of both call components in a way that stimulates the female auditory system and that the growth of FM1 had potentially positive sexual selection implications for the pre-existing simple call.
DOI: 10.6084/m9.figshare.4982126.v1
title: Elevation under RCP2.6

description: projected elevation of parakeets for the years 2016 to 2100 under RCP2.6 scenario<br>
DOI: 10.6084/m9.figshare.4982120.v1
title: Bootstrapped Elevations of Parakeets

description: bootstrap with 1000 iterations for the years 2000 to 2015<br>
DOI: 10.6084/m9.figshare.4982108.v1
title: A laryngeal fibrous mass impacts the acoustics and attractiveness of a multicomponent call in túngara frogs (<i>Physalaemus pustulosus</i>)

description: The evolution of elaborate signals can emerge from changes in anatomical signaling structures. In the male túngara frog, a simple advertisement call (‘whine’) can be ornamented facultatively with a suffix (‘chuck’) to produce a more attractive complex call, or ‘whine-chuck’. A fibrous mass (FM1) supported by the vocal cords plays a role in chuck production. Here, we examine the effects of FM1 ablation on a large set of spectral and temporal features of both the whine and chuck and we test the hypothesis that FM1 ablation reduces call attractiveness to females. Both call components were impacted by FM1 ablation, but especially the suffix. The proportion of energy in the suffix’s odd compared to even harmonics diminished markedly as did the relative amplitude, effectively eliminating the chuck percept. FM1 ablation also reduced the whine’s frequency and its rate of frequency modulation. Moreover, post-surgery chucks no longer enhanced the attractiveness of the simple call and whines also appeared to diminish in attractiveness. Together, our results demonstrate that FM1 plays a role in the production of both call components in a way that stimulates the female auditory system and that the growth of FM1 had potentially positive sexual selection implications for the pre-existing simple call.
DOI: 10.6084/m9.figshare.4981958
title: Data from: Dominance and social information use in a lizard

description: Cognition data used for analyses presented in the manuscript: "Dominance and social information use in a lizard"<br>"male.id" = Identification number of a lizard<br>"dom" = Two level factor indicating dominance status of lizard. Dominant = 1, subordinate = 0<br>"treatment" = Two level factor indicating which treatment group lizard is in. 1 = social, control = 0<br>"status" = Character variable indicating dominance status and treatment group of lizard. DS = dominant social, DC = dominant control, SS = subordinate social, SC = subordinate control<br><br>"svl" = Snout-vent-length of a lizard in millimeters<br>"mass" = Mass of a lizard in grams<br>"sc.svl" = <i>Z</i>-transformed snout-vent-length of a lizard<br>"sc.mass" = <i>Z</i>-transformed mass of a lizard <br>"task" = Two level factor indicating task given to lizard. 1 = association task, 0 = reversal<br>"trial" = Number of the trial a lizard received a task<br>"correct" = Two level factor indicating whether lizard made a correct choice or not. 1 = correct , 0 = incorrect<br>"blue.lat" = Latency in seconds of a lizard displacing the dish covered by a blue lid<br>"white.lat" = Latency in seconds of a lizard displacing the dish covered by a white lid<br>"correct.choice.only" = Two level factor indicating whether lizard only displaced the lid from the correct dish or not. 1 = correct dish only, 0 = both dish<br>"lt" = Two level factor indicating when lizard reached the learning criterion on each trial. 1 = has not reached criterion , 0 = reached criterion<br>"learnt" = Two level factor indicating whether lizard reached criterion and therefore learnt the task. 1 = learnt , 0 = did not learn<br>
DOI: 10.6084/m9.figshare.4981958.v1
title: Dominance and social information use in a lizard

description: Cognition data used for analyses presented in the manuscript: "Dominance and social information use in a lizard"<br>"male.id" = Identification number of a lizard<br>"dom" = Two level factor indicating dominance status of lizard. Dominant = 1, subordinate = 0<br>"treatment" = Two level factor indicating which treatment group lizard is in. 1 = social, control = 0<br>"status" = Character variable indicating dominance status and treatment group of lizard. DS = dominant social, DC = dominant control, SS = subordinate social, SC = subordinate control<br><br>"svl" = Snout-vent-length of a lizard in millimeters<br>"mass" = Mass of a lizard in grams<br>"sc.svl" = <i>Z</i>-transformed snout-vent-length of a lizard<br>"sc.mass" = <i>Z</i>-transformed mass of a lizard <br>"task" = Two level factor indicating task given to lizard. 1 = association task, 0 = reversal<br>"trial" = Number of the trial a lizard received a task<br>"correct" = Two level factor indicating whether lizard made a correct choice or not. 1 = correct , 0 = incorrect<br>"blue.lat" = Latency in seconds of a lizard displacing the dish covered by a blue lid<br>"white.lat" = Latency in seconds of a lizard displacing the dish covered by a white lid<br>"correct.choice.only" = Two level factor indicating whether lizard only displaced the lid from the correct dish or not. 1 = correct dish only, 0 = both dish<br>"lt" = Two level factor indicating when lizard reached the learning criterion on each trial. 1 = has not reached criterion , 0 = reached criterion<br>"learnt" = Two level factor indicating whether lizard reached criterion and therefore learnt the task. 1 = learnt , 0 = did not learn<br>
DOI: 10.6084/m9.figshare.4981832
title: Williams et al. 2017. Critical Loads of Atmospheric N Deposition for Phytoplankton Nutrient Limitation Shifts in Western U.S. Mountain Lakes

description: August 22, 2017<br><br>Williams_et_al_R_and_data_appendices_8_22_17.zip<br><br>This fileset includes data and R code used for analyses described in:<br><br>Williams, J.J., Lynch, J.A., Saros, J.E., Labou, S.G. 2017. Critical Loads of Atmospheric N Deposition for Phytoplankton Nutrient Limitation Shifts in Western U.S. Mountain Lakes. <br><br>One zip file has been uploaded, 'Williams_et_al_R_and_data_appendicies_8_22_17.zip'. This file contains:<br><br>'CL_calculation-2017-08-22.tar.gz' - a .tar bundle with data and R code files used for analyses. <br><br>'UNBUNDLE_README.rtf.' - a file with instructions for opening and running the R code files in 'CL_calculation-2017-08-22.tar.gz' along with associated saved R package dependencies. <br><br>'unbindle.R' - a R code file to be executed using instructions in 'UNBUNDLE_README.rft'<br><br>'Guide_to_files.txt' - a list and description of files within 'CL_calculation-2017-08-22.tar.gz' <br><br>NOTE: The tar.gz file can be opened and associated files can be accessed for viewing using most software for bundled files (ex: 7-zip on widows, archive utility on mac). However, if one wants to run the R code files using the provided R package dependencies, one should follow instructions in 'UNBUNDLE_README.rtf'. If you do not follow these instructions, we cannot guarantee that R scripts will execute without errors or generate the exact same results. <br><br><br>
DOI: 10.6084/m9.figshare.4981820
title: The effect of short and long term aerobic training years on VO2, and muscle and prefrontal cortex tissue oxygen extraction (HHb) in young women

description: This data set contains all the treated data used for statistic analysis. <br>
DOI: 10.6084/m9.figshare.4981832.v1
title: Williams et al. 2017. Critical Loads of Atmospheric N Deposition for Phytoplankton Nutrient Limitation Shifts in Western U.S. Mountain Lakes

description: August 22, 2017<br><br>Williams_et_al_R_and_data_appendices_8_22_17.zip<br><br>This fileset includes data and R code used for analyses described in:<br><br>Williams, J.J., Lynch, J.A., Saros, J.E., Labou, S.G. 2017. Critical Loads of Atmospheric N Deposition for Phytoplankton Nutrient Limitation Shifts in Western U.S. Mountain Lakes. <br><br>One zip file has been uploaded, 'Williams_et_al_R_and_data_appendicies_8_22_17.zip'. This file contains:<br><br>'CL_calculation-2017-08-22.tar.gz' - a .tar bundle with data and R code files used for analyses. <br><br>'UNBUNDLE_README.rtf.' - a file with instructions for opening and running the R code files in 'CL_calculation-2017-08-22.tar.gz' along with associated saved R package dependencies. <br><br>'unbindle.R' - a R code file to be executed using instructions in 'UNBUNDLE_README.rft'<br><br>'Guide_to_files.txt' - a list and description of files within 'CL_calculation-2017-08-22.tar.gz' <br><br>NOTE: The tar.gz file can be opened and associated files can be accessed for viewing using most software for bundled files (ex: 7-zip on widows, archive utility on mac). However, if one wants to run the R code files using the provided R package dependencies, one should follow instructions in 'UNBUNDLE_README.rtf'. If you do not follow these instructions, we cannot guarantee that R scripts will execute without errors or generate the exact same results. <br><br><br>
DOI: 10.6084/m9.figshare.4981865.v2
title: Data-intensive approaches to ecological research

description: Invited seminar delivered at the University of Florida Biodiversity Research Symposium on May 8th, 2017.
DOI: 10.6084/m9.figshare.4981820.v1
title: New draft item

description: This data set contains all the treated data used for statistic analysis. <br>
DOI: 10.6084/m9.figshare.4981820.v3
title: The effect of short and long term aerobic training years on VO2, and muscle and prefrontal cortex tissue oxygen extraction (HHb) in young women

description: This data set contains all the treated data used for statistic analysis. <br>
DOI: 10.6084/m9.figshare.4981769
title: Treatment with enalapril and not diltiazem ameliorated progression of chronic kidney disease in rats, and normalized renal AT1 receptor expression as measured with PET imaging.

description: identification of the kidney AT<sub>1</sub>R alterations in chronic kidney disease using PET imaging of AT1R<br>
DOI: 10.6084/m9.figshare.4981766
title: The Homogocene: a research prospectus for the study of biotic homogenisation

description: Data from Olden, Comte & Giam (2018, NeoBiota)<br> <br> Articles (n=111) published between 1995-2016 that quantified biotic homogenization based on a literature search using “(biotic OR taxonomic OR functional OR phylogenetic) AND (homogenization or homogenisation) AND (similarity OR Jaccard OR Sorensen OR Sørensen OR Bray-Curtis OR Raup-Crick)” as key terms in ISI Web of Knowledge and Google Scholar. Only those studies that quantified changes in beta-diversity over time (i.e., the definition of homogenization) were included.
DOI: 10.6084/m9.figshare.4981820.v2
title: The effect of short and long term endurance training status on systemic, and muscle and prefrontal cortex tissue oxygen utilisation in 18 - 30 year old women

description: This data set contains all the treated data used for statistic analysis. <br>
DOI: 10.6084/m9.figshare.4981769.v1
title: Treatment with enalapril and not diltiazem ameliorated progression of chronic kidney disease in rats, and normalized renal AT1 receptor expression as measured with PET imaging.

description: identification of the kidney AT<sub>1</sub>R alterations in chronic kidney disease using PET imaging of AT1R<br>
DOI: 10.6084/m9.figshare.4981748
title: Working for Biochar

description: Calculations for Economic analysis of biochar production from date palm fronds.
DOI: 10.6084/m9.figshare.4981745
title: Process Simualtion_Economic analysis of biochar production from date palm fronds

description: Aspen Plus simulation file.
DOI: 10.6084/m9.figshare.4981766.v2
title: The Homogocene: a research prospectus for the study of biotic homogenisation

description: Data from Olden, Comte & Giam (2018, NeoBiota)<br> <br> Articles (n=111) published between 1995-2016 that quantified biotic homogenization based on a literature search using “(biotic OR taxonomic OR functional OR phylogenetic) AND (homogenization or homogenisation) AND (similarity OR Jaccard OR Sorensen OR Sørensen OR Bray-Curtis OR Raup-Crick)” as key terms in ISI Web of Knowledge and Google Scholar. Only those studies that quantified changes in beta-diversity over time (i.e., the definition of homogenization) were included.
DOI: 10.6084/m9.figshare.4981745.v1
title: Process Simualtion_Economic analysis of biochar production from date palm fronds

description: Aspen Plus simulation file.
DOI: 10.6084/m9.figshare.4981766.v1
title: The Homogocene: a research prospectus for the study of biotic homogenization

description: Data from Olden, Comte & Giam (2018, NeoBiota)<br> <br> Articles (n=111) published between 1995-2016 that quantified biotic homogenization based on a literature search using “(biotic OR taxonomic OR functional OR phylogenetic) AND (homogenization or homogenisation) AND (similarity OR Jaccard OR Sorensen OR Sørensen OR Bray-Curtis OR Raup-Crick)” as key terms in ISI Web of Knowledge and Google Scholar. Only those studies that quantified changes in beta-diversity over time (i.e., the definition of homogenization) were included.
DOI: 10.6084/m9.figshare.4981673
title: Filter_reads from Illumina RNA-Seq of sugarcane progenitors

description: Filter_reads from Illumina RNA-Seq of sugarcane progenitors, Sacchrum officinarum and Saccharum spontaneum.
DOI: 10.6084/m9.figshare.4981658
title: Sugarcane Illumina RNA-Seq transcriptome

description: <b>Sugarcane transcriptome assembled from Illumina RNA-Seq data.</b><b>Publication: Hoang, N. V., Furtado, A., Mason P. J., Marquardt, A., Kasirajan, L., Thirugnanasambandam, P. P., Botha, F. C., & Henry, R. J. (2017). A survey of the complex transcriptome from the highly polyploid sugarcane genome using PacBio full-length isoform sequencing compared with <i>de novo</i> assembly from Illumina RNA sequencing. <i>BMC </i><i>Genomics, </i>18(1): 395. doi : 10.1186/s12864-017-3757-8.</b><br>
DOI: 10.6084/m9.figshare.4981673.v1
title: Filter_reads from Illumina RNA-Seq of sugarcane progenitors

description: Filter_reads from Illumina RNA-Seq of sugarcane progenitors, Sacchrum officinarum and Saccharum spontaneum.
DOI: 10.6084/m9.figshare.4981658.v1
title: Sugarcane Illumina RNA-Seq transcriptome

description: <b>Sugarcane transcriptome assembled from Illumina RNA-Seq data.</b><b>Publication: Hoang, N. V., Furtado, A., Mason P. J., Marquardt, A., Kasirajan, L., Thirugnanasambandam, P. P., Botha, F. C., & Henry, R. J. (2017). A survey of the complex transcriptome from the highly polyploid sugarcane genome using PacBio full-length isoform sequencing compared with <i>de novo</i> assembly from Illumina RNA sequencing. <i>BMC </i><i>Genomics, </i>18(1): 395. doi : 10.1186/s12864-017-3757-8.</b><br>
DOI: 10.6084/m9.figshare.4981655
title: Sugarcane PacBio Iso-Seq Transcriptome

description: Sugarcane transcriptome sequenced by PacBio Isoform sequencing, the SUGIT. <b>Publication: Hoang, N. V., Furtado, A., Mason P. J., Marquardt, A., Kasirajan, L., Thirugnanasambandam, P. P., Botha, F. C., & Henry, R. J. (2017). A survey of the complex transcriptome from the highly polyploid sugarcane genome using PacBio full-length isoform sequencing compared with <i>de novo</i> assembly from Illumina RNA sequencing. <i>BMC </i><i>Genomics, </i>18(1): 395. doi : 10.1186/s12864-017-3757-8.</b><b></b>
DOI: 10.6084/m9.figshare.4981592
title: Dataset; Filter Forensics: Microbiome Recovery from Residential HVAC Filters

description: Files associated with Ilumina sequencing of samples withdrawn from HVAC filter dust. Comparison of techniques to extract the biological samples.
DOI: 10.6084/m9.figshare.4981589
title: Data for www.preferencesfortruthtelling.com

description: Data for interactive graphs on www.preferencesfortruthtelling.com<br>The data are based on Abeler, Nosenzo, Raymond "Preferences for truth-telling" (published in Econometrica 2019)<br>