cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6934346
title: Skagit Soil Quality Study: Raw Data

description: High soil quality is tantamount to agricultural sustainability. Soil quality refers to the soil’s ability to function as a living system in sustaining biological productivity and promoting soil organismal health. The ­­­­­­­­­­­­­­­­­­­objective of this research was to investigate whether differences in soil quality between organically and conventionally farmed fields could be determined in matched pair comparisons. The soil parameters studied were soil moisture, soil compaction, pH, electrical conductivity, soil organic matter, and annelids. Research sites were vegetable fields in Skagit County, Washington, a county characterized by climate, soil, and water resources highly favorable for vegetable and bulb production. Farm fields were matched on farming and crop history, soil type, aspect, hydrology, climate, parent material, and relief. All soil sampling and associated field and laboratory work was conducted in the spring of 2013. Statistical analyses, including Cohen’s d to indicate small and medium effects, were conducted. Data averaged for all matched pairs showed statistically significant differences for pH (conventional fields), soil organic matter (organic fields), and annelids (organic fields). The Cohen’s d figures indicated a small-to-medium effect in increased soil moisture, a medium effect in decreased compaction, and a small effect in decreased electrical conductivity in organic compared to conventional fields. One reason for low pH in organic fields was the use of shallow tillage resulting in stratification with a more acidic pH in the top 30 cm of topsoil. Higher values in organic fields for soil organic matter are indicative of several factors, including the systematic use of organic matter (green manures, some compost) as part of a soil fertility management regimen. The statistically significant higher levels of SOM and annelids, although qualified, suggest a greater biological soil quality in organic farms in relation to their conventional counterparts. Confirmation of this effect is not surprising as the majority of the available research suggests similar results. At the very least, the results indicate a role that organic farm systems may play in improving biological properties of soil quality.
DOI: 10.6084/m9.figshare.6934346.v1
title: Skagit Soil Quality Study: Raw Data

description: High soil quality is tantamount to agricultural sustainability. Soil quality refers to the soil’s ability to function as a living system in sustaining biological productivity and promoting soil organismal health. The ­­­­­­­­­­­­­­­­­­­objective of this research was to investigate whether differences in soil quality between organically and conventionally farmed fields could be determined in matched pair comparisons. The soil parameters studied were soil moisture, soil compaction, pH, electrical conductivity, soil organic matter, and annelids. Research sites were vegetable fields in Skagit County, Washington, a county characterized by climate, soil, and water resources highly favorable for vegetable and bulb production. Farm fields were matched on farming and crop history, soil type, aspect, hydrology, climate, parent material, and relief. All soil sampling and associated field and laboratory work was conducted in the spring of 2013. Statistical analyses, including Cohen’s d to indicate small and medium effects, were conducted. Data averaged for all matched pairs showed statistically significant differences for pH (conventional fields), soil organic matter (organic fields), and annelids (organic fields). The Cohen’s d figures indicated a small-to-medium effect in increased soil moisture, a medium effect in decreased compaction, and a small effect in decreased electrical conductivity in organic compared to conventional fields. One reason for low pH in organic fields was the use of shallow tillage resulting in stratification with a more acidic pH in the top 30 cm of topsoil. Higher values in organic fields for soil organic matter are indicative of several factors, including the systematic use of organic matter (green manures, some compost) as part of a soil fertility management regimen. The statistically significant higher levels of SOM and annelids, although qualified, suggest a greater biological soil quality in organic farms in relation to their conventional counterparts. Confirmation of this effect is not surprising as the majority of the available research suggests similar results. At the very least, the results indicate a role that organic farm systems may play in improving biological properties of soil quality.
DOI: 10.6084/m9.figshare.6934334
title: LC-ESI-QTOF Ambient and Chamber Data

description: LC-ESI-Q-TOF data for the forest field site, Atlanta field site, New York City field site, and environmental chamber. This accompanies the manuscript "An omnipresent diversity and variability in the chemical composition of functionalized organic aerosol" by J.C. Ditto et al. See ReadMe for more information.
DOI: 10.6084/m9.figshare.6934337
title: GECKO Simulations

description: GECKO simulations for alpha- and beta-pinene. This accompanies the manuscript "An omnipresent diversity and variability in the chemical composition of functionalized organic aerosol" by J.C. Ditto et al. See ReadMe for more information on file naming and column naming.
DOI: 10.6084/m9.figshare.6934337.v1
title: GECKO Simulations

description: GECKO simulations for alpha- and beta-pinene. This accompanies the manuscript "An omnipresent diversity and variability in the chemical composition of functionalized organic aerosol" by J.C. Ditto et al. See ReadMe for more information on file naming and column naming.
DOI: 10.6084/m9.figshare.6934325
title: Cost-effectiveness of a thermal care bundle for perioperative inadvertent hypothermia

description: Statistical code is available in R markdown notebook format. The rendered html is also available.
DOI: 10.6084/m9.figshare.6934334.v2
title: LC-ESI-QTOF Ambient and Chamber Data

description: LC-ESI-Q-TOF data for the forest field site, Atlanta field site, New York City field site, and environmental chamber. This accompanies the manuscript "An omnipresent diversity and variability in the chemical composition of functionalized organic aerosol" by J.C. Ditto et al. See ReadMe for more information.
DOI: 10.6084/m9.figshare.6934325.v1
title: Cost-effectiveness of a thermal care bundle for perioperative inadvertent hypothermia

description: Statistical code is available in R markdown notebook format. The rendered html is also available.
DOI: 10.6084/m9.figshare.6934334.v1
title: LC-ESI-QTOF Ambient and Chamber Data

description: LC-ESI-Q-TOF data for the forest field site, Atlanta field site, New York City field site, and environmental chamber. This accompanies the manuscript "An omnipresent diversity and variability in the chemical composition of functionalized organic aerosol" by J.C. Ditto et al. See ReadMe for more information.
DOI: 10.6084/m9.figshare.6934307
title: Filtlong100 reads

description: These read sets were produced from our Albacore+Porechop reads, filtered down to 100x coverage of the highest quality and longest reads by Filtlong
DOI: 10.6084/m9.figshare.6934307.v1
title: Filtlong100 reads

description: These read sets were produced from our Albacore+Porechop reads, filtered down to 100x coverage of the highest quality and longest reads by Filtlong
DOI: 10.6084/m9.figshare.6934301
title: Sentiment Analysis Results

description: This file contains the full results of the sentiment analysis
DOI: 10.6084/m9.figshare.6934304
title: Annotatie

description: This link leads to the full results of the annotation process
DOI: 10.6084/m9.figshare.6934301.v1
title: Sentiment Analysis Results

description: This file contains the full results of the sentiment analysis
DOI: 10.6084/m9.figshare.6934304.v1
title: Annotatie

description: This link leads to the full results of the annotation process
DOI: 10.6084/m9.figshare.6934295
title: Company Profiles

description: This file contains the information retrieved from the Twitter profiles of companies
DOI: 10.6084/m9.figshare.6934298
title: Similarity Results

description: This file contains the full results of the similarity analysis
DOI: 10.6084/m9.figshare.6934298.v1
title: Similarity Results

description: This file contains the full results of the similarity analysis
DOI: 10.6084/m9.figshare.6934292
title: Codes

description: This folder contains the different python scripts used for our research
DOI: 10.6084/m9.figshare.6934292.v1
title: Codes

description: This folder contains the different python scripts used for our research
DOI: 10.6084/m9.figshare.6934250
title: Fluorescent reporter combination optimization for flow cytometry purity of labeled Drosophila neurons

description: Purity assessment of different fluorescent protein reporter combinations using R24B02-GAL4 as the distinct hemilineage driver. Cells were sorted using a BD FACSAria and then fixed on poly-lysine coated culture slides. Purity was assessed by epifluorescence using a DAPI counterstain for unlabeled neurons.
DOI: 10.6084/m9.figshare.6934250.v2
title: Fluorescent reporter combination optimization for flow cytometry purity of labeled Drosophila neurons

description: Purity assessment of different fluorescent protein reporter combinations using R24B02-GAL4 as the distinct hemilineage driver. Cells were sorted using a BD FACSAria and then fixed on poly-lysine coated culture slides. Purity was assessed by epifluorescence using a DAPI counterstain for unlabeled neurons.
DOI: 10.6084/m9.figshare.6934214
title: Xray Tomography and DIC sample IGSN: IEETV0002

description: Xray tomography of samplee IGSN: IEETV0002 before and after deformation in triaxial compression.Digital Image Correlation to give displacement and strain filed.
DOI: 10.6084/m9.figshare.6934214.v1
title: Xray Tomography and DIC sample IEETV0002

description: Xray tomography of samplee IGSN: IEETV0002 before and after deformation in triaxial compression.Digital Image Correlation to give displacement and strain filed.
DOI: 10.6084/m9.figshare.6934214.v2
title: Xray Tomography and DIC sample IEETV0002

description: Xray tomography of samplee IGSN: IEETV0002 before and after deformation in triaxial compression.Digital Image Correlation to give displacement and strain filed.
DOI: 10.6084/m9.figshare.6934214.v3
title: Xray Tomography and DIC sample IEETV0002

description: Xray tomography of samplee IGSN: IEETV0002 before and after deformation in triaxial compression.Digital Image Correlation to give displacement and strain filed.
DOI: 10.6084/m9.figshare.6934214.v5
title: Xray Tomography and DIC sample IGSN: IEETV0002

description: Xray tomography of samplee IGSN: IEETV0002 before and after deformation in triaxial compression.Digital Image Correlation to give displacement and strain filed.
DOI: 10.6084/m9.figshare.6934214.v4
title: Xray Tomography and DIC sample IGSN: IEETV0002

description: Xray tomography of samplee IGSN: IEETV0002 before and after deformation in triaxial compression.Digital Image Correlation to give displacement and strain filed.
DOI: 10.6084/m9.figshare.6934058
title: Overconfidence is Universal? Elicitation of Genuine Overconfidence (EGO) procedure reveals systematic differences across domain, task knowledge, and incentives in four populations

description: Dataset for "Overconfidence is Universal? Elicitation of Genuine Overconfidence (EGO) procedure reveals systematic differences across domain, task knowledge, and incentives in four populations" paper.<br><b>Math</b>: 0 if empathy test, 1 if math test<br><b>After</b>: 0 for before the test, 1 if after the test<br><b>Money</b>: 0 for tokens, 1 for coins<br><b>Placement</b>: mean of decile placement distribution. For "overconfidence" (not True overconfidence), Placement - 0.5<br><b>True_Placement</b>: Overconfidence as prediction - performance<br><b>sd</b>: uncertainty in placement as standard deviation of decile placement<br><b>Reward_for_Accuracy</b>: reward for accuracy as number of tokens/coins in the decile of performance<br>
DOI: 10.6084/m9.figshare.6934055
title: Supplementary_File_1.2

description: Table supplement 7: Complete version of Table 4: Predictors for age-five wheeze within each CAS cluster, with demographic covariates (sex, BMI, parental history of asthma). Association analyses performed via generalised linear models (GLM) with demographic covariates: age-five wheeze ~ predictor + sex (male) + BMI at age 3 + paternal history of asthma + maternal history of asthma.
DOI: 10.6084/m9.figshare.6934058.v1
title: Overconfidence is Universal? Elicitation of Genuine Overconfidence (EGO) procedure reveals systematic differences across domain, task knowledge, and incentives in four populations

description: Dataset for "Overconfidence is Universal? Elicitation of Genuine Overconfidence (EGO) procedure reveals systematic differences across domain, task knowledge, and incentives in four populations" paper.<br><b>Math</b>: 0 if empathy test, 1 if math test<br><b>After</b>: 0 for before the test, 1 if after the test<br><b>Money</b>: 0 for tokens, 1 for coins<br><b>Placement</b>: mean of decile placement distribution. For "overconfidence" (not True overconfidence), Placement - 0.5<br><b>True_Placement</b>: Overconfidence as prediction - performance<br><b>sd</b>: uncertainty in placement as standard deviation of decile placement<br><b>Reward_for_Accuracy</b>: reward for accuracy as number of tokens/coins in the decile of performance<br>
DOI: 10.6084/m9.figshare.6934052
title: Supplementary_File_1.1

description: Table Supplementary 4: Comparison of selected variables (respiratory, immunological, clinical) in CAS clusters. For categorical variables, associations were tested using Fisher exact test; for continuous variables, Kruskal-Wallis and Mann-Whitney-Wilcoxon. Adjusted P values performed with Benjamini-Yekutieli method.
DOI: 10.6084/m9.figshare.6934034
title: Company Followers Tweets

description: This file contains the Tweets of 200 followers per company
DOI: 10.6084/m9.figshare.6934034.v1
title: Company Followers Tweets

description: This file contains the Tweets of 200 followers per company
DOI: 10.6084/m9.figshare.6933911
title: Additional file 9: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel file with two documents summarizing the results obtained from the differential expression NF-CELL versus CAF-CELL analyses for differentially expressed lncRNAs and sncRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6933911.v1
title: Additional file 9: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel file with two documents summarizing the results obtained from the differential expression NF-CELL versus CAF-CELL analyses for differentially expressed lncRNAs and sncRNAs. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6933905
title: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer
DOI: 10.6084/m9.figshare.6933905.v2
title: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer
DOI: 10.6084/m9.figshare.6933905.v1
title: Additional file 8: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Mini web site presenting a dynamic venn diagram showing the relationships between the results cellular or exosomal over represented in the two analyses performed between NF- and CAF- exosomes. Clicking on any intersected number, the web site opens a dialog summarizing the ncRNAs species that correspond to the intersection. (HTML 47 kb)
DOI: 10.6084/m9.figshare.6933899
title: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer
DOI: 10.6084/m9.figshare.6933899.v2
title: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer
DOI: 10.6084/m9.figshare.6933899.v1
title: Additional file 7: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Mini web site presenting a dynamic venn diagram intersecting the relationships of significance from the assayed ncRNAs in the differential expression analyses performed between NF- and CAF- exosomes versus their respective cellular environments (i.e. NF-CELL versus NF-EXO and CAF-CELL versus CAF-EXO). Clicking on any intersected number, the web site opens a dialog summarizing the ncRNAs species that correspond to the intersection. (HTML 120 kb)
DOI: 10.6084/m9.figshare.6933887
title: Additional file 6: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 18 genes out of the 146 genes that were significantly differentially expressed in Gossypium hirsutum in response to reniform nematode infestation. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6933890
title: Additional file 6: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel file with two documents summarizing the results obtained from the differential expression CAF-CELL versus CAF-EXO analyses for differentially distributed lncRNAs and sncRNAs. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6933890.v1
title: Additional file 6: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel file with two documents summarizing the results obtained from the differential expression CAF-CELL versus CAF-EXO analyses for differentially distributed lncRNAs and sncRNAs. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.6933887.v1
title: Additional file 6: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 18 genes out of the 146 genes that were significantly differentially expressed in Gossypium hirsutum in response to reniform nematode infestation. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6933878
title: Additional file 5 of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 146 annotated genes within 72Â kb of the 15 significantly associated SNPs. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6933878.v1
title: Additional file 5 of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 146 annotated genes within 72Â kb of the 15 significantly associated SNPs. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.6933872
title: Additional file 5: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel file with two documents summarizing the results obtained from the differential expression NF-CELL versus NF-EXO analyses for differentially distributed lncRNAs and sncRNAs. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.6933872.v1
title: Additional file 5: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel file with two documents summarizing the results obtained from the differential expression NF-CELL versus NF-EXO analyses for differentially distributed lncRNAs and sncRNAs. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.6933860
title: Additional file 4: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: Genome-wide association results for the 7220 SNPs included in the study. (XLSX 564 kb)
DOI: 10.6084/m9.figshare.6933860.v1
title: Additional file 4: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: Genome-wide association results for the 7220 SNPs included in the study. (XLSX 564 kb)
DOI: 10.6084/m9.figshare.6933851
title: Additional file 3: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: Bayesian information criterion (BIC) values of compressed mixed linear model with different numbers of principle components used for association analysis in GAPIT. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.6933854
title: Additional file 3: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel document with the two count files used as input to EdgeR for differential expression analysis; one with the counts of reads of all samples mapped on the lncRNA references and another with the read counts of reads mapped on scnRNAs. (XLSX 221 kb)
DOI: 10.6084/m9.figshare.6933851.v1
title: Additional file 3: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: Bayesian information criterion (BIC) values of compressed mixed linear model with different numbers of principle components used for association analysis in GAPIT. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.6933854.v1
title: Additional file 3: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel document with the two count files used as input to EdgeR for differential expression analysis; one with the counts of reads of all samples mapped on the lncRNA references and another with the read counts of reads mapped on scnRNAs. (XLSX 221 kb)
DOI: 10.6084/m9.figshare.6933845
title: Additional file 2: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Absolute and average relative counts of reads mapped to each ncRNAs biotype per sample and fraction. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6933845.v1
title: Additional file 2: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Absolute and average relative counts of reads mapped to each ncRNAs biotype per sample and fraction. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6933827
title: Additional file 2: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 7220 SNPs used for linkage disequilibrium analysis and genome-wide association study including major and minor alleles. SNPs highlighted in yellow identify chromosomal regions associated with reniform nematode resistance. (XLSX 6162 kb)
DOI: 10.6084/m9.figshare.6933824
title: MOESM1 of The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973

description: Additional file 1: Table S1. All information of each identified TSS. Table S2. Leaderless transcripts and mis-annotated genes. Table S3. GO terms enrichments. Table S4. KEGG pathway enrichments. Table S5. Top 10 up-regulated and top 10 down-regulated transcripts. Table S6. Transcript changes of genes associated with photosynthesis and phycobilisomes. Table S7. Transcript changes of genes associated with central metabolisms. Table S8. asRNAs and their potential target genes. Table S9. List of primers used for the amplification of probe templates.