cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13020/1jgd-h107
title: Data and analyses files used in manuscript titled "Interference in microbial signaling highlights the complex relationship between quorum sensing and antibiotic resistance in Pseudomonas aeruginosa".

description: This data set contains the experimental data, corresponding analysis files and final and intermediary figure files used in the manuscript titled "Interference in microbial signaling highlights the complex relationship between quorum sensing and antibiotic resistance in Pseudomonas aeruginosa" and is intended to be made publicly available for readers and reviewers. It contains the data files from BioTek HTX/Epoch2 Microplate reader for Pseudomonas aeruginosa growth with lactonases/AHLs in Biolog Phenotype MicroArrays(TM) PM11-PM20 and additional replicate experiments done with Pseudomonas aeruginosa growing in Biolog IF-10A media with antibiotics/antimicrobial compounds and lactonases/AHLs. It also contains qPCR data from Thermo Scientific StepOnePlus(TM) Real Time PCR system for assessment of transcription levels of Pseudomonas aeruginosa folA and folP genes. Additionally, all associated and annotated analysis files generated in Microsoft Excel and GraphPad Prism are included. Analysis data from Caenorhabditis elegans killing assays are also included. All the intermediate and final figures that are used in the manuscript are provided as Microsoft PowerPoint files for easy visualization of the workflow and processing.
description: All data is arranged according to Figure Numbers used in the manuscript. Each figure is represented by a folder named [Figure Number] and a corresponding PowerPoint file named [Figure Number], that denotes the assembled figure is its intended final form. All sub-folder and file names are self explanatory in context of the figures referencing the data. All experimental data and analysis have been carefully annotated and are self-explanatory.
DOI: 10.6084/m9.figshare.21136579.v1
title: Placental volume or area? Which is the most accurate method for diagnosing the placenta accreta spectrum in pregnant women with placenta previa?

description: Supplementary contents 1 and 2 Excel Data
DOI: 10.6084/m9.figshare.21136579.v2
title: Placental volume or area? Which is the most accurate method for diagnosing the placenta accreta spectrum in pregnant women with placenta previa?

description: Supplementary contents 1 and 2 Excel Data
DOI: 10.6084/m9.figshare.21136579.v3
title: Placental volume or area? Which is the most accurate method for diagnosing the placenta accreta spectrum in pregnant women with placenta previa?

description: Supplementary contents 1 and 2 Excel Data Main Manuscript
DOI: 10.6084/m9.figshare.19953008.v1
title: Interdisciplinary Water Risk Assessment Framework for Ontario, Canada

description: This interdisicplinary water risk assessment framework is the primary output of our study entitled "<strong>Developing a novel interdisciplinary water risk assessment framework for sustainable water management in Ontario, Canada". </strong> It consists of six water risk databases with the data and final ratings assessed for each of the 38 sub-watersheds investigated in this study under each indicator. The complete methodological details, analysis scales, and primary data sources used to construct the 6 databases are provided in the main article. The secondary data used in this framework is publicly available online thus maintaining compliance with Article 2.2 that grants exemption from the Research Ethics Board Review. The sources have been provided in the main article.
DOI: 10.5281/zenodo.7114618
title: Wikidata Dump A graph data group thing

description: RDF dump of wikidata produced with wdumper.Made for a group graph project. Only includes labels and sitselinks<br>View on wdumper<b>entity count<b>: 98491518, <b>statement count</b>: 1399484145, <b>triple count</b>: 2497451237</b></b>
DOI: 10.5281/zenodo.7114617
title: Wikidata Dump A graph data group thing

description: RDF dump of wikidata produced with wdumper.Made for a group graph project. Only includes labels and sitselinks<br>View on wdumper<b>entity count<b>: 98491518, <b>statement count</b>: 1399484145, <b>triple count</b>: 2497451237</b></b>
DOI: 10.5519/qd.p9yqmer8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1366697 records)
DOI: 10.34943/5cec971c-f144-4026-8a71-0f99baf99506
title: Cambridge Bay Ice Profiler Deployed 2022-09-12

description: The ASL Shallow Water Ice Profiler 53038 was deployed on 2022-09-12 at Cambridge Bay. Cambridge Bay is located on Victoria Island in the Kitikmeot Region of Nunavut, Canada. This device is a Ice Profiler. Ice Profiler instruments are upward looking single beam echosounders mounted on the ocean floor and are specialized to measure ice draft. They can estimate ice forces, determine the thickness of ice, and the detail of the underside of sea-ice. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/32197374-862a-4050-a713-c4887b5da040
title: Cambridge Bay Ice Profiler Deployed 2022-09-12

description: The ASL Shallow Water Ice Profiler 53038 was deployed on 2022-09-12 at Cambridge Bay. Cambridge Bay is located on Victoria Island in the Kitikmeot Region of Nunavut, Canada. This device is a Ice Profiler. Ice Profiler instruments are upward looking single beam echosounders mounted on the ocean floor and are specialized to measure ice draft. They can estimate ice forces, determine the thickness of ice, and the detail of the underside of sea-ice. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15482/usda.adc/1527981
title: Data from: Genome sequence resource of Streptomyces spp. from agricultural soil that inhibit Verticillium dahliae

description: Annotation data of genome assemblies of Streptomyces spp. isolated from agricultural soil.
DOI: 10.5281/zenodo.7114640
title: pithecophaga_jefferyi_decontaminated_gx.fasta.gz

description: .
DOI: 10.5281/zenodo.7114639
title: pithecophaga_jefferyi_decontaminated_gx.fasta.gz

description: .
DOI: 10.6084/m9.figshare.21136579.v5
title: Placental volume or area? Which is the most accurate method for diagnosing the placenta accreta spectrum in pregnant women with placenta previa?

description: Supplementary contents 1 and 2 PAS videos
DOI: 10.6084/m9.figshare.21136579.v4
title: Placental volume or area? Which is the most accurate method for diagnosing the placenta accreta spectrum in pregnant women with placenta previa?

description: Supplementary contents 1 and 2 Excel Data Main Manuscript PAS videos
DOI: 10.5517/ccdc.csd.cc294qpw
title: CCDC 2119708: Experimental Crystal Structure Determination

description: Related Article: Ting Zhu, Ya Chen, Xiaoping Yang, Xilong Leng, Desmond Schipper|2022|CrystEngComm|24|6527|doi:10.1039/D2CE00753C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z73q1
title: CCDC 1824093: Experimental Crystal Structure Determination

description: Related Article: Tainára Orlando, Leandro C. Lopes, Darlon A. M. Neumann, Valquiria P. Andrade, Mateus Mittersteiner, Cláudia Q. Rocha, Nilo Zanatta, Helio G. Bonacorso, Marcos A. P. Martins, Paulo R. S. Salbego|2022|CrystEngComm|24|6600|doi:10.1039/D2CE00909A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z4fg0
title: CCDC 1821512: Experimental Crystal Structure Determination

description: Related Article: Tainára Orlando, Leandro C. Lopes, Darlon A. M. Neumann, Valquiria P. Andrade, Mateus Mittersteiner, Cláudia Q. Rocha, Nilo Zanatta, Helio G. Bonacorso, Marcos A. P. Martins, Paulo R. S. Salbego|2022|CrystEngComm|24|6600|doi:10.1039/D2CE00909A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1ztj3f
title: CCDC 1841775: Experimental Crystal Structure Determination

description: Related Article: Tainára Orlando, Leandro C. Lopes, Darlon A. M. Neumann, Valquiria P. Andrade, Mateus Mittersteiner, Cláudia Q. Rocha, Nilo Zanatta, Helio G. Bonacorso, Marcos A. P. Martins, Paulo R. S. Salbego|2022|CrystEngComm|24|6600|doi:10.1039/D2CE00909A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsg0m
title: CCDC 2168450: Experimental Crystal Structure Determination

description: Related Article: Tomislav Stolar, Jasna Alić, Ivor Lončarić, Martin Etter, Dahee Jung, Omar K. Farha, Ivica Đilović, Ernest Meštrović, Krunoslav Užarević|2022|CrystEngComm|24|6505|doi:10.1039/D2CE00668E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsg1n
title: CCDC 2168451: Experimental Crystal Structure Determination

description: Related Article: Tomislav Stolar, Jasna Alić, Ivor Lončarić, Martin Etter, Dahee Jung, Omar K. Farha, Ivica Đilović, Ernest Meštrović, Krunoslav Užarević|2022|CrystEngComm|24|6505|doi:10.1039/D2CE00668E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bsg2p
title: CCDC 2168452: Experimental Crystal Structure Determination

description: Related Article: Tomislav Stolar, Jasna Alić, Ivor Lončarić, Martin Etter, Dahee Jung, Omar K. Farha, Ivica Đilović, Ernest Meštrović, Krunoslav Užarević|2022|CrystEngComm|24|6505|doi:10.1039/D2CE00668E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxz9k
title: CCDC 2172799: Experimental Crystal Structure Determination

description: Related Article: Yair Cohen, Dor Toledano, Ilan Marek|2022|J.Am.Chem.Soc.|144|16732|doi:10.1021/jacs.2c07370
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bxzbl
title: CCDC 2172800: Experimental Crystal Structure Determination

description: Related Article: Yair Cohen, Dor Toledano, Ilan Marek|2022|J.Am.Chem.Soc.|144|16732|doi:10.1021/jacs.2c07370
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.7267/t722hj12g
title: Safest Placement for Crosswalks at Intersections

description: This data provides observations and measurements used to answer questions of interest regarding how setback crosswalks at intersections affect driver behavior and intersection safety as part of the study titled “SPR840 Safest Placement for Crosswalks at Intersections.” Data includes measurements from the simulator portion of the study which gathered information relating to average velocity and lateral position, eye-tracking fixations, galvanic skin response, and survey data to describe driver behavior as they approach and make turning movements at intersections with different configurations. The data also includes the measurements from the field portion of the study used to assess post encroachment times (PETs), turning speeds and conflict severity that were extracted from field-collected videos in 10 crosswalks in Oregon.
DOI: 10.5281/zenodo.7102313
title: Multivariate Circles

description: Images with Multivariate Normal circle-like shapes. Folder is structured in the Coco format.
DOI: 10.5281/zenodo.7102314
title: Multivariate Circles

description: Images with Multivariate Normal circle-like shapes. Folder is structured in the Coco format.
DOI: 10.5281/zenodo.7114741
title: Multivariate Circles

description: Images with Multivariate Normal circle-like shapes. Folder is structured in the Coco format.
DOI: 10.6084/m9.figshare.21210983
title: titanic.zip

description: titanic dataset
DOI: 10.5281/zenodo.7082978
title: Datasets for "Single-molecule and super-resolved imaging deciphers membrane behaviour of onco-immunogenic CCR5"

description: <strong>Flow cytometry</strong> Modality / instrument: <em>Flow cytometer</em> <em>(CytoFLEX LX, Beckman Coulter)</em> File format:<em> FCS + XIT (CytExpert, Beckman Coulter).</em> Samples and acquisitions: Fluorescent fusions in live Chinese Hamster ovary (CHO) cells. <em>File</em> <em>Cell line</em> <em>Runs</em> <em>Cells counted</em> CONTROL.fcs CHO wild-type 1 7000 GFP-CCR5.fcs CHO-GFP-CCR5 1 7000 Exp_20220916_1_GFP.xit N/A - metadata Approx. size 6 MB <strong>PaTCH microscopy images</strong> Imaging modality / instrument: <em>Brightfield</em> + <em>PaTCH fluorescence microscopy</em> Image format:<em> OME TIFF (16 bit) + MicroManager metadata files</em> Microscope settings: <em>488 nm triggered excitation; split red/green detection, cropped to green (GFP) channel only; 10 ms/frame laser exposure; 13.5 ms/frame-to-frame; 53 nm/px. Photometrics Prime95b CMOS.</em> Samples and acquisitions: Fluorescent fusions of GFP-CCR5 receptor in live CHO cells imaged with and without 100 nM CCL5 ligand. Each subfolder corresponds to a field of view and contains one brightfield and one PaTCH acquisition of the same cell. Folder Condition Fields of view AC6 CONTROL sc CCL5- 11 AC6 CCL5 sc CCL5+ (100 nM) 10 Approx. size before compression: 14 GB <strong>Structured illumination microscopy - volumetric stacks</strong> Imaging modality / instrument: <em>SIM fluorescence microscopy (custom setup at NPL based on Olympus IX71)</em> Image format:<em> OME TIFF (16 bit) with intrinsic metadata (voxel size)</em> Microscope settings: <em>638 nm excitation; 60x/1.3 NA; Flash 4.0, Hamamatsu Photonics. For additional details see the reference below (Hunter et al, bioRxiv).</em> Samples and acquisitions: Dylight 650-MC-5 labeled CCR5 receptor in fixed CHO-CCR5 cells, imaged with and without 100 nM CCL5 ligand. Each acquisition is of a unique field of view and contains one SIM reconstruction as an XYZ volumetric stack. ‘Basal membrane’ acquisitions consist of 5 slices at 200 nm z-intervals across the range of the basal membrane. ‘Whole cell' acquisitions are made up of 7 slices with 500 nm z-interval ranging from just below the basal membrane to just above the apical membrane. Folder Subfolder/condition Fields of view Basal membrane CCL5- 5 Basal membrane CCL5+ (100 nM) 6 Whole cells CCL5- 5 Whole cells CCL5+ (100 nM) 8 Approx. size before compression: 300 MB
description: {"references": ["Single-molecule and super-resolved imaging deciphers membrane behaviour of onco-immunogenic CCR5. Patrick Hunter, Alex L. Payne-Dwyer, Michael Shaw, Nathalie Signoret and Mark C. Leake. bioRxiv\u00a02022.05.19.492692v1;\u00a0doi:\u00a0https://doi.org/10.1101/2022.05.19.492692"]}
DOI: 10.5281/zenodo.7082977
title: Datasets for "Single-molecule and super-resolved imaging deciphers membrane behaviour of onco-immunogenic CCR5"

description: <strong>Flow cytometry</strong> Modality / instrument: <em>Flow cytometer</em> <em>(CytoFLEX LX, Beckman Coulter)</em> File format:<em> FCS + XIT (CytExpert, Beckman Coulter).</em> Samples and acquisitions: Fluorescent fusions in live Chinese Hamster ovary (CHO) cells. <em>File</em> <em>Cell line</em> <em>Runs</em> <em>Cells counted</em> CONTROL.fcs CHO wild-type 1 7000 GFP-CCR5.fcs CHO-GFP-CCR5 1 7000 Exp_20220916_1_GFP.xit N/A - metadata Approx. size 6 MB <strong>PaTCH microscopy images</strong> Imaging modality / instrument: <em>Brightfield</em> + <em>PaTCH fluorescence microscopy</em> Image format:<em> OME TIFF (16 bit) + MicroManager metadata files</em> Microscope settings: <em>488 nm triggered excitation; split red/green detection, cropped to green (GFP) channel only; 10 ms/frame laser exposure; 13.5 ms/frame-to-frame; 53 nm/px. Photometrics Prime95b CMOS.</em> Samples and acquisitions: Fluorescent fusions of GFP-CCR5 receptor in live CHO cells imaged with and without 100 nM CCL5 ligand. Each subfolder corresponds to a field of view and contains one brightfield and one PaTCH acquisition of the same cell. Folder Condition Fields of view AC6 CONTROL sc CCL5- 11 AC6 CCL5 sc CCL5+ (100 nM) 10 Approx. size before compression: 14 GB <strong>Structured illumination microscopy - volumetric stacks</strong> Imaging modality / instrument: <em>SIM fluorescence microscopy (custom setup at NPL based on Olympus IX71)</em> Image format:<em> OME TIFF (16 bit) with intrinsic metadata (voxel size)</em> Microscope settings: <em>638 nm excitation; 60x/1.3 NA; Flash 4.0, Hamamatsu Photonics. For additional details see the reference below (Hunter et al, bioRxiv).</em> Samples and acquisitions: Dylight 650-MC-5 labeled CCR5 receptor in fixed CHO-CCR5 cells, imaged with and without 100 nM CCL5 ligand. Each acquisition is of a unique field of view and contains one SIM reconstruction as an XYZ volumetric stack. ‘Basal membrane’ acquisitions consist of 5 slices at 200 nm z-intervals across the range of the basal membrane. ‘Whole cell' acquisitions are made up of 7 slices with 500 nm z-interval ranging from just below the basal membrane to just above the apical membrane. Folder Subfolder/condition Fields of view Basal membrane CCL5- 5 Basal membrane CCL5+ (100 nM) 6 Whole cells CCL5- 5 Whole cells CCL5+ (100 nM) 8 Approx. size before compression: 300 MB
description: {"references": ["Single-molecule and super-resolved imaging deciphers membrane behaviour of onco-immunogenic CCR5. Patrick Hunter, Alex L. Payne-Dwyer, Michael Shaw, Nathalie Signoret and Mark C. Leake. bioRxiv\u00a02022.05.19.492692v1;\u00a0doi:\u00a0https://doi.org/10.1101/2022.05.19.492692"]}
DOI: 10.25921/rad3-5477
title: EK60 Water Column Sonar Data Collected During EX2106
DOI: 10.25959/ypkd-pz89
title: Making the Most of Plain Packaging (MMoPP) - Data Files

description: Background: Smokers can respond defensively to health risk communication such as on-pack warning labels, potentially reducing their effectiveness. Theory suggests that risk perception together with self-efficacy reduces defensive responses and predicts target behaviours. Currently, tobacco warning labels globally predominantly target risk and do not explicitly consider efficacy. This study explores the effectiveness of combining Australian tobacco warning labels with efficacy content to increase quitting intentions. Methods: RCT in 83 smokers over three weeks. After a seven-day baseline phase (smoking from usual tobacco packaging), participants were randomised to one of two adhesive labels groups for the remaining 14 days: standard health warning labels (HWLs) featuring enhanced efficacy messages (experimental group) or unmodified standard HWLs (control group). Participants attached these labels to their tobacco packaging and recorded their cognitions and smoking behaviour once daily using smartphones. Multi-level structural equation modelling was used to test theorised effects of the labels on self-efficacy, risk perception and intentions to quit.
DOI: 10.24431/rw1k6cq
title: Using genetic methods to evaluate mating dynamics of snow crab (Chionoecetes opilio) in the eastern Bering Sea using archived samples collected 2007-2016 and new samples collected 2017-2018

description: This study utilized tissue and sperm reserve (i.e., spermathecae) samples taken from female snow, Tanner, and snow-Tanner hybrid crabs collected by Alaska Department of Fish and Game (ADF&G) during the annual NOAA eastern Bering Sea bottom trawl survey over a 10-year period (2007-2016) to examine spatiotemporal trends in snow crab mating dynamics. It additionally involved the collection and live holding of snow crab in 2017 and 2018 to determine the number of males that contributed to the paternity of brooded embryos. New shell females mating at the time of their first molt of maturity and old shell condition females mating subsequently were considered separately in the study. Two types of genetic markers were used in this work: nuclear and mitochondrial DNA (nDNA and mtDNA) single nucleotide polymorphisms (SNPs) and nDNA microsatellites. The SNP markers ITS (nDNA) and 16S (mtDNA) were used to determine species and maternal lineage, respectively. The five microsatellite markers Co17, Co34, Co36, Cop2 and EC0106 were selected for use in identifying individuals and determining male contributions to mating, though only Co17, Co36 and Cop2 were used in the analysis due to artifacts associated with the other two. Genotypes were generated for female crab, sperm reserves, and individual embryos in support of three objectives. Objective 1 validated the performance of known markers across the closely related snow, Tanner, and snow-Tanner hybrid crab complex in the EBS and examined the maternal lineage of hybrid crab to determine the mating combinations between snow and Tanner crabs. Objective 2 examined the mating history of snow crab using sperm reserve samples. Objective 3 examined the paternity of brooded embryos and the overlap between male genotypes present in the embryos and sperm reserves.