cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gb4skz
title: Occurrence Download

description: A dataset containing 601 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave marmorata Roezl"
 ]
}

 The dataset includes 601 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106949-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkbrfm
title: Occurrence Download

description: A dataset containing 11203065 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amphibia"
 ]
}

 The dataset includes 11203065 records from 7894 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106934-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7734778
title: Design, construction, and in vivo augmentation of a complex gut microbiome

description: Please cite: 10.1016/j.cell.2022.08.003 Cheng AG, Ho PY, Aranda-Díaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. Design, construction, and in vivo augmentation of a complex gut microbiome. Cell. 2022 Sep 15;185(19):3617-3636.e19. doi: 10.1016/j.cell.2022.08.003. Epub 2022 Sep 6. PMID: 36070752; PMCID: PMC9691261. Original raw sequencing data is available in the BioProject: PRJNA746600 <strong>Article summary:</strong> Efforts to model the human gut microbiome in mice have led to important insights into the mechanisms of host-microbe interactions. However, the model communities studied to date have been defined or complex, but not both, limiting their utility. Here, we construct and characterize <em>in vitro</em> a defined community of 104 bacterial species composed of the most common taxa from the human gut microbiota (hCom1). We then used an iterative experimental process to fill open niches: germ-free mice were colonized with hCom1 and then challenged with a human fecal sample. We identified new species that engrafted following fecal challenge and added them to hCom1, yielding hCom2. In gnotobiotic mice, hCom2 exhibited increased stability to fecal challenge and robust colonization resistance against pathogenic <em>Escherichia coli</em>. Mice colonized by either hCom2 or a human fecal community are phenotypically similar, suggesting that this consortium will enable a mechanistic interrogation of species and genes on microbiome-associated phenotypes. <strong>File Descriptions:</strong> <strong>hCom2.tar.gz:</strong> This dataset contains genomic sequences and bakta annotations of members of the hCom2 community. Please note that these may not be identical to the ones used in the publication. For the exact versions used in the publication, please reach out to the authors. <strong>hCom2_20221117.ninjaIndex.tar.gz:</strong> This tarball contains the ninjamap index and the source files used to create this index. Please use this tarball if you wish to run NinjaMap against the hCom2 community.
DOI: 10.5281/zenodo.7734779
title: Design, construction, and in vivo augmentation of a complex gut microbiome

description: Please cite: 10.1016/j.cell.2022.08.003 Cheng AG, Ho PY, Aranda-Díaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. Design, construction, and in vivo augmentation of a complex gut microbiome. Cell. 2022 Sep 15;185(19):3617-3636.e19. doi: 10.1016/j.cell.2022.08.003. Epub 2022 Sep 6. PMID: 36070752; PMCID: PMC9691261. This dataset contains the latest versions of the genomic sequences and bakta annotations of hCom2 community. Please note that these may not be identical to the ones used in the publication. For the exact versions used in the publication, please reach out to the authors. Original raw sequencing data is available in the BioProject: PRJNA746600 Article summary: Efforts to model the human gut microbiome in mice have led to important insights into the mechanisms of host-microbe interactions. However, the model communities studied to date have been defined or complex, but not both, limiting their utility. Here, we construct and characterize <em>in vitro</em> a defined community of 104 bacterial species composed of the most common taxa from the human gut microbiota (hCom1). We then used an iterative experimental process to fill open niches: germ-free mice were colonized with hCom1 and then challenged with a human fecal sample. We identified new species that engrafted following fecal challenge and added them to hCom1, yielding hCom2. In gnotobiotic mice, hCom2 exhibited increased stability to fecal challenge and robust colonization resistance against pathogenic <em>Escherichia coli</em>. Mice colonized by either hCom2 or a human fecal community are phenotypically similar, suggesting that this consortium will enable a mechanistic interrogation of species and genes on microbiome-associated phenotypes.
DOI: 10.5281/zenodo.7872423
title: Design, construction, and in vivo augmentation of a complex gut microbiome

description: Please cite: 10.1016/j.cell.2022.08.003 Cheng AG, Ho PY, Aranda-Díaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. Design, construction, and in vivo augmentation of a complex gut microbiome. Cell. 2022 Sep 15;185(19):3617-3636.e19. doi: 10.1016/j.cell.2022.08.003. Epub 2022 Sep 6. PMID: 36070752; PMCID: PMC9691261. Original raw sequencing data is available in the BioProject: PRJNA746600 <strong>Article summary:</strong> Efforts to model the human gut microbiome in mice have led to important insights into the mechanisms of host-microbe interactions. However, the model communities studied to date have been defined or complex, but not both, limiting their utility. Here, we construct and characterize <em>in vitro</em> a defined community of 104 bacterial species composed of the most common taxa from the human gut microbiota (hCom1). We then used an iterative experimental process to fill open niches: germ-free mice were colonized with hCom1 and then challenged with a human fecal sample. We identified new species that engrafted following fecal challenge and added them to hCom1, yielding hCom2. In gnotobiotic mice, hCom2 exhibited increased stability to fecal challenge and robust colonization resistance against pathogenic <em>Escherichia coli</em>. Mice colonized by either hCom2 or a human fecal community are phenotypically similar, suggesting that this consortium will enable a mechanistic interrogation of species and genes on microbiome-associated phenotypes. <strong>File Descriptions:</strong> <strong>hCom2.tar.gz:</strong> This dataset contains genomic sequences and bakta annotations of members of the hCom2 community. Please note that these may not be identical to the ones used in the publication. For the exact versions used in the publication, please reach out to the authors. <strong>hCom2_20221117.ninjaIndex.tar.gz:</strong> This tarball contains the ninjamap index and the source files used to create this index. Please use this tarball if you wish to run NinjaMap against the hCom2 community.
DOI: 10.34740/kaggle/dsv/5543539
title: #ChatGPT 1000 Daily 🐦 Tweets
DOI: 10.34943/428561ce-9cba-4a16-94b4-afded5dbe8cb
title: Endeavour North Current Meter Deployed 2018-06-27

description: The Nortek Aquadopp Current Meter A3L9187 AQD14215 was deployed on 2018-06-27 at Endeavour North. This north section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Current Meter. Acoustic Current Meters (ACM) measure current speed and direction, using the Doppler Effect. Aquadopp current metres have a sensor head that contains 3 acoustic transducers, a tilt sensor, a temperature sensor and a pressure sensor. The instrument transmits a short pulse of sound, and then listens to its echo to measure the change in pitch or frequency. The change in pitch can determine the velocity of the current. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.6073/pasta/a71d608898443d1284196d1bc5d375e9
title: CBS03 Grasshopper sparrow surveys: densities, reproductive index, and locations of marked individuals on Konza Prairie

description: Data on the location, identity, and reproductive index (Vickery et al. 1992) of Grasshopper Sparrows prior to 2017, and after that, additionally many Dickcissels, Eastern Meadowlarks, Brown-headed Cowbirds and other songbirds within 10-ha plots on multiple watersheds units on Konza and on two adjoining units on the Rannells Preserve. Each plot was surveyed every ~7-10 days. These surveys documented individual sparrow, Dickcissel, and Eastern Meadowlark locations, and are used to calculate dispersal distances and territory densities and movements. Missing values in character fields denoted by NA, and in numeric fields, either -999 or -9.
DOI: 10.5281/zenodo.7872684
title: Mapping and modeling human colorectal carcinoma interactions with the tumor microenvironment

description: This dataset can be interactively explored with VisCello (https://github.com/qinzhu/VisCello). Please install VisCello and use e.g. "cello("path_to/hcc_main_cello")" to load the human colon cancer single cell dataset.
DOI: 10.5281/zenodo.7872683
title: Mapping and modeling human colorectal carcinoma interactions with the tumor microenvironment

description: This dataset can be interactively explored with VisCello (https://github.com/qinzhu/VisCello). Please install VisCello and use e.g. "cello("path_to/hcc_main_cello")" to load the human colon cancer single cell dataset.
DOI: 10.34943/461a3e92-5e32-4b4a-91b4-19db45f8854e
title: Endeavour North Current Meter Deployed 2018-06-27

description: The Nortek Aquadopp Current Meter A3L9189 AQD14221 was deployed on 2018-06-27 at Endeavour North. This north section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Current Meter. Acoustic Current Meters (ACM) measure current speed and direction, using the Doppler Effect. Aquadopp current metres have a sensor head that contains 3 acoustic transducers, a tilt sensor, a temperature sensor and a pressure sensor. The instrument transmits a short pulse of sound, and then listens to its echo to measure the change in pitch or frequency. The change in pitch can determine the velocity of the current. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.7872698
title: Biomechanical Effects of an Articulating Prosthetic Toe Joint During Stair Navigation for Individuals with Unilateral, Below-Knee Limb Loss

description: See ReadMe.txt (Markdown Format)
DOI: 10.5281/zenodo.7872697
title: Biomechanical Effects of an Articulating Prosthetic Toe Joint During Stair Navigation for Individuals with Unilateral, Below-Knee Limb Loss

description: See ReadMe.txt (Markdown Format)
DOI: 10.6084/m9.figshare.22644607
title: Data: A survey of water chemistry used in zebrafish facilities and their effects on early zebrafish development

description: These data include the raw data from our Survey displayed in the Manuscript in Figures 1 to 3. It also includes the raw data for experiments 1 and 2 that are summarized in figures 4 and 5 of the associated manuscript. Experiment 1 is on the effects of analar grade salts and CO<sub>2</sub> on the development and growth of zebrafish up to 4 dpf. Experiment 2 is on the effects of commercial marine salts and CO2 on the development and growth of zebrafish up to 4 dpf.
DOI: 10.17632/w5yjhpkybx.1
title: Respirable silica particles in coal mine dust: image library

description: This dataset comprises an image library of 282 respirable silica particles. The particles were identified in samples of respirable coal mine dust (RCMD) collected in a group of US underground mines, and samples of lab-generated respirable dust that were created using the primary dust source materials obtained from those mines. Details regarding sample collection are given in [1,2]. A limited number of particles were also identified in samples generated from silica-containing reference materials, namely: Min-U-Sil 5 or Sil-Co-Sil (US Silica, Katy, TX; these are high purity quartz products), VCAS-160 (Vitro Minerals, Jackson, TN, USA; this is a high purity aluminosilicate glass powder), and Ball Clay (The Ceramic Shop, Norristown, PA, USA; this is an aluminosilicate powder that has moderate silica content).

The dataset can inform the understanding of real respirable silica particles in coal mine environments, including their texture and morphology, variation in aluminum content between the particle surface and core, and association with other particles (e.g., as agglomerates). 

The image library is presented in a single table, formatted with two columns (i.e., such that two particles are presented per row.) For each particle, a pair of SEM images (micrographs) is shown; one image was captured at 5 kV and the other at 20 kV, and Si (green) and Al (red) maps overlaid are overlaid. Additionally, the sample identifiers and the particle number are reported, along with the SEM magnification and the measured Si and Al% at 5 and 20 kV. If only one silica particle in the image was analyzed, the image is centered on that particle; if multiple particles were analyzed, the particle for which elemental values are reported is marked with +. (Sample identifiers include: Type (all samples) = respirable coal mine dust “RCMD”, lab-generated respirable sample from mine dust “source” material, or lab-generated respirable sample from “reference” material; Mine (RCMD and source samples) = mine number between 10-24; Location (RCMD samples) = intake, production, roof “bolter”, “feeder” breaker, or return; Source for source samples = run-of-mine coal “ROM coal”, ROM rock, bolter dust or rock dust; Material (reference samples) = Min-U-Sil 5 or Sil-Co-Sil, VCAS-160, and Ball Clay.)

References
[1] C. Keles, N. Pokhrel, E. Sarver, A study of respirable silica in underground coal mines: Sources. Minerals. 12 (2022) 1115. https://doi.org/10.3390/min12091115 
[2] C. Keles, E. Sarver A Study of Respirable Silica in Underground Coal Mines: Particle Characteristics. 12 (2022) 1555. https://doi.org/10.3390/min12121555
DOI: 10.34943/56e79777-bc34-4124-af74-99cfddf7cd1c
title: Endeavour North Current Meter Deployed 2018-06-28

description: The Nortek Aquadopp Current Meter 14236 was deployed on 2018-06-28 at Endeavour North. This north section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Current Meter. Acoustic Current Meters (ACM) measure current speed and direction, using the Doppler Effect. Aquadopp current metres have a sensor head that contains 3 acoustic transducers, a tilt sensor, a temperature sensor and a pressure sensor. The instrument transmits a short pulse of sound, and then listens to its echo to measure the change in pitch or frequency. The change in pitch can determine the velocity of the current. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.17632/v9t87zr5bb.1
title: Efficacy of fungicides against brown spot of pear in Argentina

description: Brown spot of pear (BSP), a fungal disease of importance in Europe, has been recently detected for the first time in pear orchards in the Alto Valle of Río Negro (Patagonia), Argentina, South America. The disease is caused by Stemphylium vesicarium and its main symptoms are lesions in fruits and leaves. To assess counteracting measures against BSP, we tested the efficacy of fungicides by means of in vitro assessment of mycelial growth and spore germination of native S. vesicarium strains, and in vivo preventive and curative treatments in pear fruit 'D'Anjou' var. The fungicides were chosen according to their commercial availability and registration in pear crops and included: pyraclostrobin + boscalid (Bellis®); ziram (Ziram®); captan (Merpan®); and Melaleuca alternifolia extract (Timorex®). In addition, the efficacy of Bellis® and Ziram® was determined through in-field assays.
DOI: 10.17632/9p2tswhnhz.1
title: Mendeley Supplement Materials for "Examining the burden of psoriasis and psoriatic arthritis in a diverse US adult cohort using the All of Us Research Program"

description: Contains Mendeley Supplementary Methods, Table I, and Table II
DOI: 10.17632/gr2wc98xyr.1
title: Microporosity Calculation Matlab Code

description: Matlab code useful to calculate de microporosity of a microtomography of a multiphase volcanic rock
DOI: 10.17632/5f747ygsyd.1
title: Competencia en cuidado espiritual en enfermería: Revisión integrativa de literatura

description: el cuidado espiritual puede considerarse un componente básico de la filosofía del cuidado holístico. Objetivo: determinar los estudios de intervención con perspectivas y estrategias educativas para el desarrollo de la competencia en cuidados espirituales en profesionales y estudiantes de enfermería.  Materiales y Métodos: Revisión integrativa de la literatura efectuada en el periodo2021-2021, en las bases de datos PubMed, ProQuest, Scopus, Lilacs y BVS (Biblioteca Virtual de Salud). Se siguió las recomendaciones PRISMA y se fundamentó en los parámetros establecidos por Whittemore y Knafl de identificación del problema, búsqueda de literatura, evaluación de los datos, análisis de los datos y presentación de resultados. Resultados: Se encontraron 10 artículos de intervenciones publicados. La educación para el desarrollo de competencias en el cuidado espiritual se ha realizado desde programas y actividades educativas, en la formación del pregrado y en los profesionales de enfermería durante su ejercicio. Las estrategias pedagógicas son cursos específicos, sesiones cortas o programas a lo largo del plan de estudios. Las intervenciones, evidencian impactos en las competencias de habilidades y conocimientos. La espiritualidad individual en los estudiantes es un predictor de la capacidad para proporcionar cuidados espirituales. Conclusiones: Existe evidencia de las estrategias para desarrollar competencias en cuidado espiritual en enfermería en estudiantes y profesionales, las publicaciones sobre la temática son escasas por lo que se requiere de la implementación de estrategias novedosas y más rigurosas que permitan el desarrollo de competencias para el abordaje espiritual en Enfermería.
DOI: 10.17632/p8fvkgr5kk.1
title: A critical Discourse on African communalism vis-a-vis Western individualism: The existential realities.

description: Abstract
The hallowed nature of communalism as a concept that depicts Africans, relates to the bedrock of sound human relations in traditional African life. From a broader perspective, it reflects the African understanding of identity, humanism, dignity, respect and reliance on one another for meaningful life. In contrast, individualism is regarded to be the base of Western identity, thus, the respect of individual autonomy whilst in the society. However, a systematic inquiry into the root of these cultural identities reflects their ontology, thus, the rationale behind their identity claims. The study interrogates the rightness of the ontology of such identity claims, which within their ambiance are faced with the question “, is the West inherently individualistic?” On the other hand, is communalism inherently African? Thus, using analytical methods of philosophical inquiry, the study delved into the existential realities of these cultures, aiming to give answers to the above questions by looking at the practical reflections of their identity claims. The study discovered that the premise for their identity claims is circumstantial. Therefore the study established that individualism is a human inherent trait, not peculiar to the West alone. Also, communalism is not inherently African alone but a natural ideology that exists in the consciousness of every individual regardless of their culture.

Keywords: African communalism, Western individualism, ontology, personal identity.
DOI: 10.17632/rc795nd6cy.1
title: Financial Stress Dataset

description: This study's dataset combines variables that have not been previously investigated empirically. These key variables (income, personal values, family financial socialisation, financial stress and family purchase behaviour) were measured using validated instruments from over 5,000 participants.
Fascinatingly, the study makes a specific reference to the intriguing idea that financial socialisation within the family helps to reduce or accept financial stress, and enable the purchase of funeral policies despite the severity of financial hardship
DOI: 10.17632/fkf872jwxp.1
title: Semantic Augmented Reality Procedures Ontology - Gastronomy 4.0 Application Case

description: In the last decade, Augmented Reality is a technology that has been advancing strongly revolutionizing information technologies, particularly in the context of 4.0, it has managed to expand to different fields of application such as tourism, entertainment, industry, health, marketing, and others. This development led to the need to establish standardized data access to achieve a universal experience regardless of the application that generates it. Different proposals emerged that integrated semantic web technologies to achieve this purpose, so new challenges emerge to ensure that these virtual contents are used by the user in a dynamic interaction directed by procedures composed of a set of actions to be performed in a physical context enriched by augmented reality technologies.  In this order, this dataset presents the aplication case of  ontology Semantic Augmented Reality Procedures Ontology applied to Gastronomy used in a framework that assists in the creation, exploitation, and publication of these procedures to be consumed by applications that use these technologies.
DOI: 10.17632/438jm2xdgy.1
title: Prognosis for people with multiple primary melanomas compared with a single primary melanoma

description: The Supplementary materials for the paper entitled "Prognosis for people with multiple primary melanomas compared with a single primary melanoma" submitted to the Journal of American Academy of Dermatology.