cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8970515
title: Early Palaeozoic arc-related gabbro-diorite suite in East Junggar, southern Central Asian Orogenic Belt: petrogenesis and tectonic implications

description: The Armantai and Kalamaili oceans were both important branches of the Palaeo-Asian Ocean between the Altai microcontinent and the Junggar juvenile crust; however, their geological evolution is not completely clear. This paper reports detailed petrological, zircon geochronological, whole-rock elemental and Sr-Nd-Pb isotopic data for a newly discovered gabbro-diorite suite (Akputo pluton) in East Junggar to constrain this issue. Quartz diorite and hornblende gabbro yield intrusion <sup>206</sup>Pb/<sup>238</sup>U ages of ca. 444–440 Ma, which indicates that mafic-intermediate magmatism occurred in the earliest Silurian. The gabbroic-dioritic rocks have tholeiite to calc-alkaline affinities and are characterised by moderately fractionated rare earth element patterns with flat heavy rare earth elements, enrichment in Rb, Ba, K, Sr, and depletion in Nb, Ta, Ti. Low initial Sr and Pb isotopic compositions and positive ε<sub>Nd</sub>(t) indicate a derivation from the isotopically depleted mantle sources. The geochemical compositions and melting calculations suggest that the gabbro-diorite suite originated from partial melting of spinel-bearing mantle sources that had been metasomatised by subduction-derived fluids and sediments. The Akputo intrusions formed in an arc setting related to the southward subduction of the Armantai Ocean. Taking the regional angular unconformity between the Ordovician sediments and Silurian volcanics into account, we further suggest that the Early to Middle Silurian was a transition period of the closure of Armantai Ocean and the initial spreading of Kalamaili Ocean.
DOI: 10.6084/m9.figshare.8970515.v1
title: Early Palaeozoic arc-related gabbro-diorite suite in East Junggar, southern Central Asian Orogenic Belt: petrogenesis and tectonic implications

description: The Armantai and Kalamaili oceans were both important branches of the Palaeo-Asian Ocean between the Altai microcontinent and the Junggar juvenile crust; however, their geological evolution is not completely clear. This paper reports detailed petrological, zircon geochronological, whole-rock elemental and Sr-Nd-Pb isotopic data for a newly discovered gabbro-diorite suite (Akputo pluton) in East Junggar to constrain this issue. Quartz diorite and hornblende gabbro yield intrusion <sup>206</sup>Pb/<sup>238</sup>U ages of ca. 444–440 Ma, which indicates that mafic-intermediate magmatism occurred in the earliest Silurian. The gabbroic-dioritic rocks have tholeiite to calc-alkaline affinities and are characterised by moderately fractionated rare earth element patterns with flat heavy rare earth elements, enrichment in Rb, Ba, K, Sr, and depletion in Nb, Ta, Ti. Low initial Sr and Pb isotopic compositions and positive ε<sub>Nd</sub>(t) indicate a derivation from the isotopically depleted mantle sources. The geochemical compositions and melting calculations suggest that the gabbro-diorite suite originated from partial melting of spinel-bearing mantle sources that had been metasomatised by subduction-derived fluids and sediments. The Akputo intrusions formed in an arc setting related to the southward subduction of the Armantai Ocean. Taking the regional angular unconformity between the Ordovician sediments and Silurian volcanics into account, we further suggest that the Early to Middle Silurian was a transition period of the closure of Armantai Ocean and the initial spreading of Kalamaili Ocean.
DOI: 10.6084/m9.figshare.7397666.v1
title: Additional file 2: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Gene expression in peach leaves after aphid infestation. (XLSX 11389 kb)
DOI: 10.6084/m9.figshare.7397759.v1
title: Additional file 4: of Discovery and annotation of a novel transposable element family in Gossypium

description: Table S2. The CICR members in G. arboreum, G. hirsutum and G. barbadense. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7397768
title: Additional file 7: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Primers used for quantitative qPCR analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7397759
title: Additional file 4: of Discovery and annotation of a novel transposable element family in Gossypium

description: Table S2. The CICR members in G. arboreum, G. hirsutum and G. barbadense. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7397786
title: Additional file 6: of Discovery and annotation of a novel transposable element family in Gossypium

description: Table S4. Distribution of CICR-LTR in different tetraploid genome assemblies. (XLSX 633 kb)
DOI: 10.6084/m9.figshare.14211326
title: Additional file 5 of Transcriptomes analysis reveals novel insight into the molecular mechanisms of somatic embryogenesis in Hevea brasiliensis

description: Additional file 5: Table S2. FPKM and annotation of TFs and SE-related genes.
DOI: 10.6084/m9.figshare.10022570
title: MOESM4 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 4: Fig. S4. Hyper/hypo methylated CpG islands status and transcriptional expression of 24 unique genes. (a) Represents DNA methylation status and gene ID in column plot (b) Represents DNA methylation status and gene ID in dot plot.
DOI: 10.6084/m9.figshare.10022570.v1
title: MOESM4 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 4: Fig. S4. Hyper/hypo methylated CpG islands status and transcriptional expression of 24 unique genes. (a) Represents DNA methylation status and gene ID in column plot (b) Represents DNA methylation status and gene ID in dot plot.
DOI: 10.6084/m9.figshare.10022582
title: MOESM6 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 6: Table S1B. The summary of KEGG pathways for up-regulated genes by RNA-seq.
DOI: 10.6084/m9.figshare.10022582.v1
title: MOESM6 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 6: Table S1B. The summary of KEGG pathways for up-regulated genes by RNA-seq.
DOI: 10.6084/m9.figshare.10022591
title: MOESM7 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 7: Table S2A. The summary of GO terms for down-regulated genes by RNA-seq.
DOI: 10.6084/m9.figshare.10022591.v1
title: MOESM7 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 7: Table S2A. The summary of GO terms for down-regulated genes by RNA-seq.
DOI: 10.6084/m9.figshare.10022600
title: MOESM8 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 8: Table S2B. The summary of KEGG pathways for down -regulated genes by RNA-seq.
DOI: 10.6084/m9.figshare.10022600.v1
title: MOESM8 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 8: Table S2B. The summary of KEGG pathways for down -regulated genes by RNA-seq.
DOI: 10.6084/m9.figshare.10022609
title: MOESM9 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 9: Table S3. Summary of clinical information of 299 LSCC cases involved in this study.
DOI: 10.6084/m9.figshare.10022609.v1
title: MOESM9 of Integrative analysis of genetic and epigenetic profiling of lung squamous cell carcinoma (LSCC) patients to identify smoking level relevant biomarkers

description: Additional file 9: Table S3. Summary of clinical information of 299 LSCC cases involved in this study.
DOI: 10.6084/m9.figshare.16834900
title: Additional file 1 of CircGSK3B promotes RORA expression and suppresses gastric cancer progression through the prevention of EZH2 trans-inhibition

description: Additional file 1: Table S1. Detailed information of enrolled 6 circRNAs datasets.
DOI: 10.6084/m9.figshare.16834900.v1
title: Additional file 1 of CircGSK3B promotes RORA expression and suppresses gastric cancer progression through the prevention of EZH2 trans-inhibition

description: Additional file 1: Table S1. Detailed information of enrolled 6 circRNAs datasets.
DOI: 10.6084/m9.figshare.7397768.v1
title: Additional file 7: of Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae SĂźlzer) reveal defence responses controlled by the Rm3 locus

description: Primers used for quantitative qPCR analysis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8970692.v1
title: The detailed information about one to one miRNA orthologues.

description: The detailed information about one to one miRNA orthologue across four species.
DOI: 10.6084/m9.figshare.22602104.v1
title: Additional file 1 of StackCirRNAPred: computational classification of long circRNA from other lncRNA based on stacking strategy

description: Additional file 1: The datasets used in this paper: human datasets and mouse datasets.
DOI: 10.6084/m9.figshare.22602107
title: Additional file 2 of StackCirRNAPred: computational classification of long circRNA from other lncRNA based on stacking strategy

description: Additional file 2: Table S1. The Optimal Feature Set of 110-dimensional.
DOI: 10.6084/m9.figshare.22602104
title: Additional file 1 of StackCirRNAPred: computational classification of long circRNA from other lncRNA based on stacking strategy

description: Additional file 1: The datasets used in this paper: human datasets and mouse datasets.
DOI: 10.6084/m9.figshare.8970692
title: The detailed information about one to one miRNA orthologues.

description: The detailed information about one to one miRNA orthologue across four species.
DOI: 10.6084/m9.figshare.7397834.v1
title: MOESM1 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 1: Table S1. Clinical characteristics of participants.
DOI: 10.6084/m9.figshare.7397858
title: MOESM2 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 2: Table S2. Gene ontology analyses of the DE mRNAs.
DOI: 10.6084/m9.figshare.15262158.v1
title: Evaluation strategies for measuring pneumococcal conjugate vaccine impact in low-resource settings

description: Objectives: Pneumococcal conjugate vaccines (PCVs) are effective in reducing pneumococcal disease. We measured 13-valent PCV (PCV13) effect on different pneumococcal outcomes using diverse studies in Lao People’s Democratic Republic. Methods: Studies included: pre-PCV13 population-based record review of hospitalized childhood pneumonia cases; acute respiratory infection (ARI) study post-PCV13 to demonstrate effectiveness (VE) against hypoxic pneumonia; invasive pneumococcal disease (IPD) surveillance in all ages (2004–2018); carriage studies in children hospitalized with ARI (2013–2019); community carriage surveys pre- and post-PCV13. Results: Annual pneumonia incidence rate in children pre-PCV13 was 1,530 (95% confidence interval [CI] 1,477–1,584) per 100,000. Adjusted VE against hypoxic pneumonia was 37% (95% CI 6–57%). For IPD, 85% (11/13) of cases were due to vaccine-types pre-PCV13, and 43% (3/7) post-PCV13 in children aged &lt;5 years; for ≥5 years, 61% (27/44) and 42% (17/40), respectively. For ARI cases, adjusted VE for vaccine-type carriage was 39% (95% CI 4–60) in &lt;5 year olds; slightly higher than community surveys (23% [95% CI 4–39%] in 12–23 month olds). Conclusions: Despite limited baseline data, we found evidence of PCV13 impact on disease and carriage. Our approach could be used in similar settings to augment existing WHO PCV evaluation guidelines.
DOI: 10.6084/m9.figshare.14211437
title: Additional file 2 of Family function fully mediates the relationship between social support and perinatal depression in rural Southwest China

description: Additional file 2. dataset(CSV 32KB).
DOI: 10.6084/m9.figshare.8970695
title: Metadata of samples submitted to the NCBI Gene Expression Omnibus.

description: Metadata of 137 samples submitted to the NCBI Gene Expression Omnibus.
DOI: 10.6084/m9.figshare.7397834
title: MOESM1 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 1: Table S1. Clinical characteristics of participants.
DOI: 10.6084/m9.figshare.8970695.v1
title: Metadata of samples submitted to the NCBI Gene Expression Omnibus.

description: Metadata of 137 samples submitted to the NCBI Gene Expression Omnibus.
DOI: 10.6084/m9.figshare.7397858.v1
title: MOESM2 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 2: Table S2. Gene ontology analyses of the DE mRNAs.
DOI: 10.6084/m9.figshare.7397885.v1
title: MOESM3 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 3: Table S3. Differentially Expressed miRNAs.
DOI: 10.6084/m9.figshare.7397975
title: Additional file 1: of Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue

description: The Primer information of lncRNA for qPCR validation (XLSX 11 kb)
DOI: 10.6084/m9.figshare.14211437.v1
title: Additional file 2 of Family function fully mediates the relationship between social support and perinatal depression in rural Southwest China

description: Additional file 2. dataset(CSV 32KB).
DOI: 10.17030/uclan.data.00000434
title: Perceptions, behaviours and barriers towards exercise practices in inflammatory bowel disease
DOI: 10.15131/shef.data.25152620.v1
title: Small RNA sequencing data from oral cancer cell line extracellular pellets

description: Oral cancer cell line (H357 and SCC4) extracellular pellets were isolated by differential centrifugation and subject to small RNA sequencing analysis. More detailed methodology is included in the readme.txt file. Microsoft Excel data is formatted as normalised reads per million. Aligned sequencing data is provided as BAM/BAI files.
DOI: 10.6084/m9.figshare.7397900.v1
title: MOESM4 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 4: Table S4. circRNA-associated-ceRNA networks that are most likely involved in HIV-1 replication.
DOI: 10.6084/m9.figshare.22602271
title: Additional file 1 of Evaluating a community engagement model for malaria elimination in Haiti: lessons from the community health council project (2019–2021)

description: Additional file 1. CHC implementation manual English and French.
DOI: 10.6084/m9.figshare.22602274
title: Additional file 2 of Evaluating a community engagement model for malaria elimination in Haiti: lessons from the community health council project (2019–2021)

description: Additional file 2. CHC M&E handbook English and French.
DOI: 10.6084/m9.figshare.22602274.v1
title: Additional file 2 of Evaluating a community engagement model for malaria elimination in Haiti: lessons from the community health council project (2019–2021)

description: Additional file 2. CHC M&E handbook English and French.
DOI: 10.6084/m9.figshare.22602271.v1
title: Additional file 1 of Evaluating a community engagement model for malaria elimination in Haiti: lessons from the community health council project (2019–2021)

description: Additional file 1. CHC implementation manual English and French.
DOI: 10.6084/m9.figshare.22602232
title: Additional file 3 of Identification of key module and hub genes in pulpitis using weighted gene co-expression network analysis

description: Additional file 3. Detailed process of GO analysis.
DOI: 10.6084/m9.figshare.25162574
title: Visits and removed fruits

description: Number of visits and handled fruits by frugivores in three Iberian pear, Pyrus bourgaeana, populations as revealed by camera trapping. This is a second revised improved version.
DOI: 10.6084/m9.figshare.25162574.v1
title: Visits and removed fruits

description: Number of visits and handled fruits by frugivores in three Iberian pear, Pyrus bourgaeana, populations as revealed by camera trapping. This is a second revised improved version.
DOI: 10.6084/m9.figshare.25162688
title: Wellcome 2019 PhD programmes studies

description: Interview schedules and codings for Part One and Part Two of the Wellcome 2019 PhD training programmes call.
DOI: 10.6084/m9.figshare.25162688.v1
title: Wellcome 2019 PhD programmes studies

description: Interview schedules and codings for Part One and Part Two of the Wellcome 2019 PhD training programmes call.
DOI: 10.6084/m9.figshare.7397990
title: Additional file 2: of Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue

description: Overview of RNA-seq. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7397885
title: MOESM3 of Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection

description: Additional file 3: Table S3. Differentially Expressed miRNAs.
DOI: 10.6084/m9.figshare.7397975.v1
title: Additional file 1: of Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue

description: The Primer information of lncRNA for qPCR validation (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7398011
title: Additional file 3: of Genome-wide identification and characterization of long non-coding RNAs during postnatal development of rabbit adipose tissue

description: List of 30353 annotated lncRNA loci. (XLSX 1322 kb)
DOI: 10.6084/m9.figshare.22600180
title: Additional file 3 of Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance

description: Additional file 3: Table S3. Annotation and gene organization of the mitochondrial genome of C. rubens. N: minor strand; J: major strand. The tRNAs were annotated by different methods: MITOS2, ARWEN or aligning with the sequences of related species that were not annotated by software (ALIGN). Running ARWEN with the “-ps &lt; num&gt;” option.
DOI: 10.6084/m9.figshare.22600189
title: Additional file 6 of Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance

description: Additional file 6: Table S6. The Ks, Ka and Ka/Ks values in the mitogenomes of S. coffeae, C. japonicus, C. rubens, C. floridensis and E. pela. SC means S. coffeae, CJ means C. japonicus, CR means C. rubens, CF means C. floridensis, EP means E. pela. The base composition of the full genome was calculated with the major strand (+).
DOI: 10.6084/m9.figshare.22602275
title: Additional file 2 of m6A-related lncRNA-based immune infiltration characteristic analysis and prognostic model for colonic adenocarcinoma

description: Additional file 2: Table S2. Differential expression of m6a regulators in normal and tumor tissues in TCGA samples combined with GTEX samples.
DOI: 10.48370/ofd/gl1p3o
title: Apodemus flavicollis - 159774, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1990-07-15, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/xjy59y
title: Apodemus flavicollis - 11495, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-24, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/qnhzr2
title: Apodemus flavicollis - 146344, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1983-05-13, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/ywaa54
title: Apodemus flavicollis - 8220, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-05-25, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/vra2cb
title: Apodemus flavicollis - 2115, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1953-07-06, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/0vz8dr
title: Apodemus flavicollis - 41746, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-11-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/veeumz
title: Apodemus flavicollis - 10255, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-07-07, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/j1p1r3
title: Apodemus flavicollis - 25675, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1961-08-23, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/bo9yjb
title: Apodemus flavicollis - 35381, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1964-05-08, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/wyxy63
title: Apodemus flavicollis - 28237, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1962-06-30, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/v73oto
title: Apodemus flavicollis - 12551, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1955-08-13, in: Białowieża National Park, Poland. Material type:
DOI: 10.48370/ofd/duzxms
title: Apodemus flavicollis - 44493, Zoological collection of the Mammal Research Institute, PAS

description: Apodemus flavicollis (Yellow-necked mouse) from Zoological collection of the Mammal Research Institute, PAS. Collected 1965-07-04, in: Białowieża National Park, Poland. Material type: