cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20455503.v4
title: Interaction between Brain-based Learning Strategies and Patterns of Infographics and its Impact on the Development of Information Concepts among Saudi Undergraduate Cybersecurity Students

description: Through addressing the following questions, the current study aims to investigate the interaction between brain-based learning strategies—spaced repetition and distributed practice—and infographics—static and animated—and its impact on the development of information concepts for Saudi undergraduate cybersecurity students. 1. What informative principles should Saudi undergraduate students in cybersecurity possess? 2. What standards should be followed while creating static or animated infographics to produce conceptual knowledge for Saudi undergraduate cybersecurity students? 3. What are the educational guidelines for an adaptive e-environment based brain-based learning strategies (spaced repetition and distributed practice - mental models) for fostering the development of information concepts in Saudi undergraduate cybersecurity students? 4. What is the interaction between brain-based learning methods (spaced repetition and distributed practice-mental models) and infographics (static/animated) and how does it affect the Saudi undergraduate cybersecurity students' development of information concepts? (80) Qassim University cybersecurity students—40 men and 40 women—make up the research groups. These individuals were selected at random from the 198 level In Qassim University's cybersecurity programme, there is only one student enrolled. They were split up into four groups, each with 20 students, and studied using the Blackboard system: experimental (G1), (G2), (G3), and (G4). These students were divided according on how they preferred infographics to be presented in order to help cybersecurity students develop their information concepts. <br> <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.28464668.v1
title: DATA for advertisements of Chinese fashion magazine.csv

description: Quantitative content analysis of fashion and luxury items advertisements published in the Chinese language editions of Vogue and Elle: China, Hong Kong, Taiwan <br>
DOI: 10.6084/m9.figshare.28700534.v1
title: CpG Analysis of Intergenic Regions in BetaCoV/Wuhan/IPBCAMS-WH-01/2019 (SARS-CoV-2)

description: This project analyzes the distribution of CpG sites in the intergenic regions of the BetaCoV/Wuhan/IPBCAMS-WH-01/2019 (SARS-CoV-2) genome. The analysis provides insights into the genomic characteristics of this virus, highlighting regions with potential functional significance.<br>Key findings include:- Significant variation in CpG counts across intergenic regions.- Observed/expected (O/E) ratios reveal both enrichment and depletion patterns, reflecting evolutionary pressures such as host immune evasion and mutational biases.- Most intergenic regions exhibit low CpG content, consistent with CpG depletion commonly observed in coronaviruses.<br>The dataset includes:- A tab-delimited file (`BetaCoV_WH_cpg_analysis.txt`) containing CpG counts and O/E ratios for each intergenic region.- Visualizations: - Bar chart showing CpG counts across regions. - Line plot illustrating O/E ratios.- Python scripts used for extracting intergenic regions, calculating CpG metrics, and generating plots.<br>This work contributes to understanding the genomic architecture of BetaCoV/Wuhan/IPBCAMS-WH-01/2019 and its evolutionary strategies. The analysis was performed using Biopython, Pandas, and Matplotlib.<br>
DOI: 10.6084/m9.figshare.7628714.v1
title: Data.xlsx

description: Original data for "An insight into land subsidence using distributed fiber optic sensing with Brillouin scattering and a 6-year case in Yangtze River delta"
DOI: 10.6084/m9.figshare.4669429.v3
title: Finding correlations in water quality data

description: R code for performing basic correlations between water quality parameters sampled over summer 2016. <br>
DOI: 10.6084/m9.figshare.28738040.v1
title: Raw data of figures

description: By repairing oxidized methionine (Met-SO) residues, methionine sulfoxide reductases (Msrs) play important role in survival and virulence of <i>Salmonella</i> Typhimurium (<i>S.</i> Typhimurium). <i>Salmonella</i> encodes five <i>msr</i>s. Through the generation of single and cumulative deletion mutants (Δ<i>msrA</i>, Δ<i>msrP</i>, Δ<i>msrAC</i>, Δ<i>msrACP</i>, Δ<i>msrACPB</i>, and Δ<i>msrACPBbisC</i>), we analyzed the relative contribution of various <i>msr</i> genes (<i>msrA</i>, <i>msrB</i>, <i>msrC</i>, <i>msrP</i>, and <i>bisC</i>) in oxidative stress survival of <i>S. </i>Typhimurium. We evaluated the effects of <i>msr</i> gene deletion(s) on protein oxidation, survival in immune cells, colonization in poultry organs, and immune responses. The mutant strains exhibited elevated levels of protein aggregation, with the ∆<i>msrACPBbisC</i> strain accumulating the highest levels of protein aggregates. Survival assays in macrophages and dendritic cells demonstrated that the <i>msrA</i>, <i>msrC</i>, and <i>bisC</i> genes play critical roles in proliferation in immune cells, whereas the contribution of <i>msrP</i> is minimal. One-day-old female White Leghorn chicks were orally inoculated with <i>S</i>. Typhimurium or various <i>msr</i> mutant strains. The <i>msr</i> mutants showed defective cecal colonization and systemic dissemination to the spleen and liver, the degree of which depends on the number of mutations. Birds inoculated with <i>msr</i> mutant strains showed modulated humoral as well as cellular immune responses as compared to <i>S. </i>Typhimurium infected counterpart. These findings underscore the critical roles of <i>msr</i> genes in colonization in poultry and modulation of immune responses, and have implications in the design and development of live vaccines against <i>S.</i> Typhimurium for poultry.
DOI: 10.6084/m9.figshare.20405925.v2
title: Data and code for Fletcher et al. (2022): Extending Isolation by Resistance

description: Code and data to execute theory, simulations, and empirical analysis in Fletcher et al. (2022): Extending isolation by resistance to predict genetic connectivity. Methods in Ecology and Evolution. <br> Code: markov_chain_functions.R: all functions used in both simulations and in the empirical example. <br> markov_chain_simulation_Fig2.R: code used in simulations of non-isotropic graphs shown in Fig. 2 of the article. <br> markov_chain_simulation_asym_Fig3.R: code used in simulations of directed migration shown in Fig. 3 of the article. <br> markov_chain_simulation_mort_Fig4.R: code used in simulations of migration mortality shown in Fig. 4 of the article. <br> crayfish_example.R: code used in the empirical example on the Panama City crayfish. <br> crayfish_data: all data used in the empirical example on the Panama City crayfish.
DOI: 10.6084/m9.figshare.26103079.v4
title: <i>ResultsAndInputsForReproducibility for </i><b>Data-driven projections of candidate enhancer-activating SNPs in immune regulation</b>

description: <i>Results and chosen inputs for</i> <b>Data-driven computational predictions of potential enhancer-activating SNPs in cytokine signaling pathways</b>
DOI: 10.6084/m9.figshare.26777608.v1
title: Additional file 4 of Social environment influences microbiota and potentially pathogenic bacterial communities on the skin of developing birds

description: Additional file 4.
DOI: 10.6084/m9.figshare.14531445.v2
title: functional_annotations_of_all_ORFs

description: This is the concatenated prokka output from all ~14,000 samples. It shows the functional annotations of every ORF (1.6 billion) in our gene catalogs (including consensus and unclustered genes).
DOI: 10.6084/m9.figshare.28831124.v1
title: Depth, temperature, and pressure relationship in the Kanto subduction zone

description: Tables show the relationship between depth, temperature, and pressure in the Kanto subduction zone, where the Pacific and Philippine Sea Plates are subducting. Data were estimated from Peacock and Wang (1999), Peacock (1999), and Wada and He (2017).References:Peacock, S.M., 2009. Thermal and metamorphic environment of subduction zone episodic tremor and slip. J. Geophys. Res. 114, B00A07. Peacock, S.M., Wang, K., 1999. Seismic consequences of warm versus cool subduction metamorphism: Examples from southwest and northeast Japan. Science 286, 937-939. Wada, I.,He, J., 2017. Thermal structure of the Kanto region, Japan. Geophys. Res. Lett. 44, 7194-7202.
DOI: 10.6084/m9.figshare.9751748.v1
title: compound 2 wildtype and mutant TEVC.opjuA common mechanism allows selective targeting of GluN2B subunit-containing N-methyl-D-aspartate receptors

description: Original data used for the generation of figures in Schreiber et al..<br>
DOI: 10.25573/serc.28616378.v1
title: Water Quality Data, Carrie Bow Cay, Marine GEO, Smithsonian Carrie Bow Cay Field Station

description: Water quality data collected on a YSI EXO2 multiparameter sonde at the MarineGEO Carrie Bow Cay observatory (Smithsonian Carrie Bow Cay Field Station, Carrie Bow Cay, Belize). The sonde is located on an offshore platform alongside meteorological and water level instrumentation.The local time at this site is Central Standard Time (UTC-6). Note that timestamps in this dataset are reported as Coordinated Universal Time (UTC).The figshare resource also contains quality control metadata to assist with interpretation and analysis. Review the "readme.txt" file for more information.The dataset should be cited as follows:Paul, Valarie; Rich, Roy; Lonneman, Michael; Westbrook, Elizabeth; Cheng, Selina; Tashjian, Allegra; Foltz, Zachary; Peresta, Gary (2025). Water Quality Data, Carrie Bow Cay, MarineGEO, Smithsonian Carrie Bow Cay Field Station. Smithsonian Environmental Research Center. Dataset. https://doi.org/10.25573/serc.28616378.Location: 16.802838, -88.082039
DOI: 10.6084/m9.figshare.12015021.v1
title: Dystrophin multiplex ISH: qPCR data

description: Cq data and analysis of qPCR for dystrophin isoforms in canine skeletal muscle and canine embryos, and for the SRY gene in embryo genomic DNAData used for manuscript<b>Single-transcript multiplex in situ hybridisation reveals unique patterns of dystrophin isoform expression in the developing mammalian embryo</b><br>John C.W. Hildyard, Abbe H. Crawford, Faye Rawson, Dominique O. Riddell, Rachel C.M. Harron, Richard J. Piercy<br>
DOI: 10.6084/m9.figshare.28473857.v2
title: Supplemental files: videos, code, tables, data

description: Supplemental data, including videos, tables, and code
DOI: 10.6084/m9.figshare.21195562.v1
title: LUMIERE dataset - MRI parameters

description: This CSV file details MRI acquisition information for all studies in this dataset. The information was extracted from the DICOM headers. Please note that the slice count might not correspond to the NIfTI file slice count in some cases, due to (a) original DICOM sequences being "interleaved" and separated before conversion, or (b) we had to crop out orientation markers burned into the files.
DOI: 10.6084/m9.figshare.28648994.v1
title: Raw data of the article-BbCFEM7 plays an important role in the pathogenicity and gut microbial community formation in the co-infection of Beauveria bassiana with Metarhizium rileyi

description: Raw data of the article-BbCFEM7 plays an important role in the pathogenicity and gut microbial community formation in the co-infection of Beauveria bassiana with Metarhizium rileyi.
DOI: 10.6084/m9.figshare.1420590.v1
title: Dissecting allele architecture of early onset IBD using high-density genotyping

description: The inflammatory bowel diseases (IBD) are common, complex disorders in which genetic and environmental factors are believed to interact leading to chronic inflammatory responses against the gut microbiota. Earlier genetic studies performed in mostly adult population of European descent identified 163 loci affecting IBD risk, but most have relatively modest effect sizes, and altogether explain only ~20% of the genetic susceptibility. Pediatric onset represents about 25% of overall incident cases in IBD, characterized by distinct disease physiology, course and risks. The goal of this study is to compare the allelic architecture of early onset IBD with adult onset in population of European descent.
DOI: 10.6084/m9.figshare.28747574.v1
title: New York Squirrel Census 2020-2021: training sample dataset

description: Two sample datasets created for training purposes from The Squirrel Census https://www.thesquirrelcensus.com/ hosted by NYC OpenData 2018 Central Park Squirrel Census - Squirrel Data | NYC Open Data, no reuse license specified.
DOI: 10.6084/m9.figshare.8099909.v1
title: Supplementary Material for: Tropomyosin-Related Kinase Receptor and Neurotrophin Expression in Cutaneous Melanoma Is Associated with a Poor Prognosis and Decreased Survival

description: <b><i>Objective:</i></b> Normally, activation of tropomyosin-related kinase (TRK) receptors by neurotrophins (NTs) stimulates intracellular pathways involved in cell survival and proliferation. Dysregulation of NT/TRK signaling may affect neoplasm prognosis. Data on NT and TRK expression in melanomas are limited, and it is unclear whether NT/TRK signaling pathways are involved in the origin and progression of this neoplasm. <b><i>Methods:</i></b> We examined whether NT/TRK expression differs across different cutaneous melanoma grades and subtypes, and whether it is associated with melanoma prognosis and survival. A cross-sectional study was performed in which the expression of TrkA, TrkB, nerve growth factor (NGF), and brain-derived neurotrophic factor (BDNF) was analyzed by immunohistochemistry of 154 melanoma samples. We investigated NT/TRK expression associations with prognostic factors for melanoma, relapse-free survival (RFS), and overall survival (OS). <b><i>Results:</i></b> Of the 154 melanoma samples, 77 (55.4%) were TrkA immunopositive, 81 (58.3%) were TrkB immunopositive, 113 (81.3%) were BDNF immunopositive, and 104 (75.4%) were NGF immunopositive. We found NT/TRK expression associated strongly with several clinical prognostic factors, including the tumor-node-metastasis stage (<i>p</i> &lt; 0.001), histological subtype (<i>p</i> &lt; 0.001), and Clark level (<i>p</i> &lt; 0.05), as well as with a worse OS (<i>p</i> &lt; 0.05 for all, except TrkB) and RFS (<i>p</i> &lt; 0.05 for all). <b><i>Conclusions:</i></b> Our results show strong associations of NT/TRK expression with melanoma stage progression and a poor prognosis.
DOI: 10.6084/m9.figshare.12462077.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-4666 to JVASP-7952)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.23088227.v1
title: Supplementary Material for: The introduction of an MR-conditional prototype for cardiopulmonary bypass support – technical aspects and system requirements

description: Abstract Introduction: The use of cardiopulmonary bypass (CBP; also known as a heart-lung machine) in newborns with complex congenital heart defects may result in brain damage. Magnetic resonance imaging (MRI) assessments cannot be performed safely because the metal components used to construct CBP devices may elicit adverse effects on patients when they are placed in a magnetic field. Thus, this project aimed to develop a prototype MR-conditional circulatory support system that could be used to perform cerebral perfusion studies in animal models. Methods: The circulatory support device includes a roller pump with two rollers. The ferromagnetic and most of the metal components of the roller pump were modified or replaced and the drive was exchanged by an air-pressure motor. All materials used to develop the prototype device were tested in the magnetic field according to the American Society for Testing and Materials (ASTM) Standard F2503-13. The technical performance parameters, including runtime/durability as well as achievable speed and pulsation behavior, were evaluated and compared to standard requirements. The behavior of the prototype device was compared with a commercially available pump. Results: The MRI-conditional pump system produced no image artifacts and could be safely operated in the presence of the magnetic field. The system exhibited minor performance-related differences when compared to a standard CPB pump, feature testing revealed that the prototype meets the requirements (i.e., operability, controllability, and flow range) needed to proceed with the planned animal studies.
DOI: 10.6084/m9.figshare.25436047.v2
title: Article Data

description: The package contains 14 categories of class typical dictionaries, class typical feature vector, class typical feature vector DF value and Sort the words by weight value in descending order.This paper proposes an Average Term frequency-Document frequency-Wavelet analysis (ATF-DF-WA) algorithm for text classification. The algorithm leverages the inherent characteristics of big data text samples, which are furnished with pre-existing category labels. It employs wavelet analysis on these samples and subsequently performs classification through waveform similarity computation. The algorithm is structured into two distinct stages. The first stage is the typical feature extraction stage. Before text classification, the ATF-DF text category feature extraction algorithm is initially proposed drawing upon statistical principles of big data. The ATF-DF algorithm is employed for the extraction of features from multi-category large-scale textual data, utilizing the existing category labels to derive class-specific feature vectors. These vectors are subsequently transformed into waveforms, and the wavelet analysis is employed to derive the class typical feature layer waveform. The second stage is the text classification stage. Based on the class's typical feature vector, the feature vector for the sample to be classified is derived. Subsequently, wavelet analysis (WA) is conducted to extract the waveform from the feature layer. Text classification is accomplished by quantifying the similarity between the obtained waveform and the waveform of the class's characteristic feature layer. The ATF-DF-WA algorithm leverages the statistical advantages inherent in big data and effectively employs wavelet analysis tools, thus offering distinctive benefits. Experimental outcomes indicate that, in comparison with conventional text classification algorithms, the ATF-DF-WA algorithm precisely extracts class-representative feature vectors from diverse text types. This precision is attributed to the application of wavelet analysis and waveform similarity computations, which substantially enhance the accuracy, recall rate, and F1 score of text classification.
DOI: 10.6084/m9.figshare.9810236.v1
title: A de novo assembly of the sweet cherry (Prunus avium cv. Tieton) genome using linked-read sequencing technology

description: Genome assembly of sweet cherry cv. Tieton by using linked-read sequencing technology. Annotation of the assembly and chromosome-scale pseudomolecule construction.
DOI: 10.6084/m9.figshare.17085428.v1
title: Supplementary Material for: Low Concentration of Fecal Valeric Acid at 1 Year of Age Is Linked with Eczema and Food Allergy at 13 Years of Age: Findings from a Swedish Birth Cohort

description: <b><i>Background:</i></b> Short-chain fatty acids (SCFAs) are abundant bacterial metabolites in the gut, with immunomodulatory properties. Hence, they may influence allergy development. Previous studies have linked fecal SCFA pattern during infancy with allergy. However, the association of SCFAs to allergic outcomes in adolescence is not well established. Here, we examined how the fecal SCFA pattern at 1 year of age related to allergy at 13 years of age. <b><i>Methods:</i></b> Levels of 8 SCFAs in fecal samples collected at 1 year of age from 110 children were quantified using gas chromatography. The same individuals were evaluated at 13 years of age for allergic symptoms, allergy diagnosis and allergy medication by questionnaire, and for sensitization using skin prick test against egg, milk, fish, wheat and soy, cat, dog, horse, birch, and timothy grass. <b><i>Results:</i></b> The concentration of fecal valeric acid at 1 year of age was inversely associated with eczema at 13 years of age (OR 0.6, 95% CI: 0.4–1.0, <i>p</i> = 0.049) and showed a trend for inverse association with food allergy at 13 years of age (OR 0.6, 95% CI: 0.4–1.0, <i>p</i> = 0.057). In a sub-group analysis of children with eczema at 1 year of age, a higher concentration of fecal valeric acid was linked with reduced risk of their eczema remaining at 13 years of age (OR 0.2, 95% CI: 0.0–1.5), although this latter analysis did not reach statistical significance (<i>p</i> = 0.12). <b><i>Conclusions:</i></b> Our findings lend further support to the notion of early childhood as a critical period when allergy may be programmed via the gut microbiota. Higher levels of fecal valeric acid may be characteristic of a protective gut microbiota and/or actively contribute to protection from eczema and food allergy.
DOI: 10.6084/m9.figshare.4868339.v2
title: 2017 04 14 Mesh to estimate noise of intra oral scanner Trios and Carestream

description: wafer imaged with intra oral scanner
DOI: 10.6084/m9.figshare.27115357.v1
title: Ethical Standards Survey Data #1

description: This dataset corresponds to the data received from the first survey
DOI: 10.6084/m9.figshare.14321727.v1
title: Blends rheological properties of copolymer polypropylene/recycled polypropylene from industrial containers

description: ABSTRACT In this study, blends of copolymer polypropylene (PPCop /recycled polypropylene (PPRec) from industrial containers after consumption were evaluated in three different ratios (80:20, 60:40 and 40:60 wt.%). The blends were evaluated by melt flow index, torque rheometry and rheology in a dynamic oscillatory regime. The results from the melt flow index indicated that the blending of recycled material with PPCop causes a decrease in the molecular weight as compared to PPCop. By torque rheometry, it was verified that the blends showed improved processability in relation to PPCop. Also, the blends showed stability throughout the processing, indicating absence of degradation due to the process conditions used. By the dynamic-oscillatory regime tests, it was observed that, at low frequencies (&lt;1 rad/s), the PPCop and the blends (PPCop / PPRec) demonstrated a Newtonian fluid behavior, whereas, at frequencies greater than 1 rad/s, a pseudoplastic fluid behavior was observed. The values of the intersection points (G ‘= G”) of the storage modulus curves (G’) and loss modulus (G’), as a function of the angular frequency (ω) indicated that the blends showed a reduction of the molecular weight, which was more pronounced in the composition containing 60% PPRec. The rheological results of the PPCop / PPRec blends were of great relevance, since they allowed the analysis of the blends behavior containing recycled material.
DOI: 10.15468/dl.wh3gtg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Abies amabilis, Abies grandis, Abies lasiocarpa, Abies procera, Acer macrophyllum, Alnus rubra, Callitropsis nootkatensis, Picea engelmannii, Picea sitchensis, Pinus albicaulis, Pinus contorta, Pinus monticola, Pinus ponderosa, Populus balsamifera, Pseudotsuga menziesii, Taxus brevifolia, Thuja plicata, Tsuga heterophylla, Tsuga mertensiana)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009633-250426092105405/datasets/export for details.
DOI: 10.6084/m9.figshare.24288913.v1
title: Sample mass spectrometry data for human bottom-up proteomics

description: Sample mass spectrometry data from a bottom-up proteomics analysis of healthy human proteins. Original data source: https://zenodo.org/record/4274987.Data were collected on Thermo's Q-Exactive Plus mass spectrometer after digestion by trypsin.A human proteome FASTA file from UniProt is also included.
DOI: 10.6084/m9.figshare.28479035.v5
title: pre

description: <br>prediction