cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21559261.v1
title: Additional file 1 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 1 Table S1. Information about samples used in this study.
DOI: 10.6084/m9.figshare.21559198.v1
title: Additional file 4 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 4: Table S4. List of circRNAs and miRNA predicted by using miRanda and TargetScan. Potential connections between circRNAs and microRNAs were predicted by using TargetScan and miRanda, and the interaction results were displayed by Cytoscape. All the circRNAs and miRNAs were listed.
DOI: 10.18128/m130-010.2024-02
title: Racism-county-employment inequity

description: Employment inequity is the ratio between the proportion of people aged 16-24, in the civilian labor force, who are employed and identify as White alone, not Hispanic or Latino and the proportion of people aged 16-24, in the civilian labor force, who are employed and identify as a different race/ethnic group. We have computed the educational inequity measure for the following groups: (1) White alone, not Hispanic or Latino : Black alone, (2) White alone, not Hispanic or Latino : Asian alone, (3) White alone, not Hispanic or Latino : Hispanic or Latino.
DOI: 10.6084/m9.figshare.20510559
title: Parent–Child communication about concussion: what role can the Centers for Disease Control and Prevention’s HEADS UP concussion in youth sports handouts play?

description: Concussion education for parents/guardians (hereafter referred to as parents) has the potential to play an important role in youth athlete concussion safety. The goal of this study was to evaluate the impact of the Centers for Disease Control and Prevention’s (CDC) HEADS UP handout on parent–child communication about concussion. YMCA branches from 15 associations from across the United States were randomized to CDC HEADS UP intervention condition or education as usual control condition using a cluster randomization strategy. In the intervention condition, coaches shared parent- and athlete-specific handouts with parents and asked parents to share and discuss the athlete-specific handouts with their child. Generalized estimating equations, with repeated measures to account for the correlation among matched participants and YMCA associations, were employed. Multivariable analyses exploring the relationship between time (pre- and post-intervention) and communication showed that the percent of parents who talked to their child about concussion increased in the intervention group (aRR=1.33, 95% CI=1.22, 1.44), but not in the control group. CDC HEADS UP handouts help families talk about concussion safety. Sports organizations seeking to educate parents of athletes about concussion should consider using CDC HEADS UP handouts and following a similar dissemination strategy.
DOI: 10.6084/m9.figshare.21559216.v1
title: Additional file 1 of Clinicopathological features of patients with wide local excision of eyelid malignant neoplasms: a more than five years retrospective study from China

description: Additional file 1.
DOI: 10.6084/m9.figshare.21559258.v1
title: Additional file 19 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 19 Table S18. Genome-wide detection of highly differentiated loci between DW and UP-XI.
DOI: 10.6084/m9.figshare.22607716
title: Additional file 5 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 5.
DOI: 10.6084/m9.figshare.22607719
title: Additional file 6 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 6.
DOI: 10.6084/m9.figshare.21559258
title: Additional file 19 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 19 Table S18. Genome-wide detection of highly differentiated loci between DW and UP-XI.
DOI: 10.6084/m9.figshare.22607722.v1
title: Additional file 7 of Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes

description: Additional file 7.
DOI: 10.6084/m9.figshare.7927772
title: Additional file 4 of A statistical normalization method and differential expression analysis for RNA-seq data between different species

description: Two groups of orthologous transcripts in human and mouse. (TXT 2450 KB)
DOI: 10.5281/zenodo.10631434
title: IDCS Dataset for heptazine project supervised by clémence allain and lucas frédéric

description: Here is the dataset of absorption and emission spectra collected during idcs project on heptazines supervised by clemence allain and lucas frederic
DOI: 10.5281/zenodo.10631435
title: IDCS Dataset for heptazine project supervised by clémence allain and lucas frédéric

description: Here is the dataset of absorption and emission spectra collected during idcs project on heptazines supervised by clemence allain and lucas frederic
DOI: 10.6084/m9.figshare.21559279
title: Additional file 2 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 2 Table S2. Summary of Annotation for genomic variation.
DOI: 10.18128/m130-011.2024-02
title: Racism-county-homeownership inequity

description: Homeownership inequity is the ratio between the proportion of householders identifying as White alone, not Hispanicor Latino, who own (as opposed to renting) their home and the proportion of householders identifying as a different race/ethnic group who own their home. We have computed the educational inequity measure for the following groups: (1) White alone, not Hispanic or Latino : Black alone, (2) White alone, not Hispanic or Lanino : Asian along, (3) White alone, not Hispanic or Latino : Hispanic or Latino.
DOI: 10.18128/m130-009.2024-02
title: Racism-county-educational inequity

description: Educational inequity is the ratio between the proportion of people aged 25 years and older identifying as White alone, not Hispanic or Latino, with a college degree or higher and the proportion of people aged 25 years and older identifying as a different race/ethnic group with a college degree or higher. We have computed the educational inequity measure for the following groups: (1) White alone, not Hispanic or Latino : Black alone, (2) White alone, not Hispanic or Latino : Asian alone, (3) White alone, not Hispanic or Latino : Hispanic or Latino.
DOI: 10.6084/m9.figshare.21559209
title: Additional file 5 of JAK1 inactivation promotes proliferation and migration of endometrial cancer cells via upregulating the hypoxia-inducible factor signaling pathway

description: Additional file 5. Supplementary Tables.
DOI: 10.6084/m9.figshare.21559209.v1
title: Additional file 5 of JAK1 inactivation promotes proliferation and migration of endometrial cancer cells via upregulating the hypoxia-inducible factor signaling pathway

description: Additional file 5. Supplementary Tables.
DOI: 10.6084/m9.figshare.21559216
title: Additional file 1 of Clinicopathological features of patients with wide local excision of eyelid malignant neoplasms: a more than five years retrospective study from China

description: Additional file 1.
DOI: 10.6084/m9.figshare.21559267.v1
title: Additional file 21 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 21 Table S20. Genome-wide detection of highly differentiated loci between IR-GJ and UP-GJ.
DOI: 10.18128/m130-007.2024-02
title: Sexism-state-abortion access

description: The state-level abortion access measure r eports the proportion of a state's females aged 15-44 who reside in counties with an abortion provider by year and month from 2009-2022.
DOI: 10.18128/m130-006.2024-02
title: Sexism-state-proportion of state legislators identifying as female

description: This measure captures the proportion of state legislators who identify as female. We compute the proportion for the state legislature as a whole and for the state house and senate legislative chambers.
DOI: 10.18128/m130-004.2024-02
title: Sexism-state-paid family and medical leave

description: The state-level paid family and medical leave measure denotes whether a state has a law that guarantees paid family and medical leave for employees.
DOI: 10.18128/m130-003.2024-02
title: Sexism-state-poverty ratio

description: The state-level poverty ratio compares the proportion of femailes living in poverty to the proportion of males living in poverty in a given state in a given year.
DOI: 10.5281/zenodo.10417109
title: endometrial hyperplasia

description: endometrial hyperplasia
DOI: 10.5281/zenodo.8351801
title: endometrial hyperplasia

description: endometrial hyperplasia
DOI: 10.6084/m9.figshare.21559300
title: Additional file 9 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 9 Table S8. Genome-wide detection of positive selection in upland GJ rice.
DOI: 10.18128/m130-002.2024-02
title: Sexism-state-labor force ratio

description: The state-level labor force ratio compares the proportion of men in the labor force to the proportion of women in the labor force in a given state in a given year.
DOI: 10.6084/m9.figshare.21559231
title: Additional file 10 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 10 Table S9. Genome-wide detection and functional annotation of selective sweep regions in the deepwater rice (DW).
DOI: 10.6084/m9.figshare.21559231.v1
title: Additional file 10 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 10 Table S9. Genome-wide detection and functional annotation of selective sweep regions in the deepwater rice (DW).
DOI: 10.6084/m9.figshare.21559195
title: Additional file 3 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 3: Table S3. List of DEcircRNAs were identified between the CCI and NC groups. Following differential expression analysis, 374 DEcircRNAs were identified between the CCI and NC groups (4 mice per group) by using FC filtering (FC ≥ 2 or ≤ 0.5) and FDR (Q &lt;  0.001).
DOI: 10.6084/m9.figshare.21559195.v1
title: Additional file 3 of Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain

description: Additional file 3: Table S3. List of DEcircRNAs were identified between the CCI and NC groups. Following differential expression analysis, 374 DEcircRNAs were identified between the CCI and NC groups (4 mice per group) by using FC filtering (FC ≥ 2 or ≤ 0.5) and FDR (Q &lt;  0.001).
DOI: 10.6084/m9.figshare.21559264.v1
title: Additional file 20 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 20 Table S19. Genome-wide detection of highly differentiated loci between IR-XI and UP-XI.
DOI: 10.6084/m9.figshare.21559285
title: Additional file 4 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 4 Table S3. Genetic divergence (FST) among distinct rice ecotypes populations and wild rice.
DOI: 10.6084/m9.figshare.21559285.v1
title: Additional file 4 of Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS

description: Additional file 4 Table S3. Genetic divergence (FST) among distinct rice ecotypes populations and wild rice.
DOI: 10.6084/m9.figshare.24189151
title: Additional file 1 of Comprehensive analysis and validation of SNX7 as a novel biomarker for the diagnosis, prognosis, and prediction of chemotherapy and immunotherapy response in hepatocellular carcinoma

description: Additional file 1.
DOI: 10.15468/dl.urmq2e
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Heliophanus simplex Simon, 1868",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094600-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npdvzy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aspidura deraniyagalae Gans & Fetcho, 1982)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094601-240626123714530/datasets/export for details.
DOI: 10.15468/dl.598bfa
title: Occurrence Download

description: A dataset containing 87340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myotis daubentonii (Kuhl, 1817)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 87340 records from 1805 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094595-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1568765.v4
title: Expression of dengue virus NS3 protein in <i>Drosophila</i> alters its susceptibility to infection

description: We developed a <i>Drosophila</i> model in which the dengue virus NS3 protein is expressed in a tissue specific and inducible manner. Dengue virus NS3 is a multifunctional protein playing a major role during viral replication. Both protease and helicase domains of NS3 are interacting with human and insect host proteins including innate immune components of the host machinery. We characterized the NS3 transgenic flies showing that NS3 expression did not affect fly development. To further study the links between NS3 and the innate immune response, we challenge the flies with gram-positive and gram-negative bacteria. Interestingly, the <i>Drosophila</i> transgenic flies expressing NS3 were more susceptible to bacterial infections than control flies. However ubiquitous or immune-specific NS3 expression affected neither the life span nor the response to a non-infectious stress of the flies. In conclusion, we generated a new <i>in vivo</i> system to study the functional impact of DENV NS3 protein on the innate immune response.
DOI: 10.6084/m9.figshare.1568765.v5
title: Expression of dengue virus NS3 protein in <i>Drosophila</i> alters its susceptibility to infection

description: We developed a <i>Drosophila</i> model in which the dengue virus NS3 protein is expressed in a tissue specific and inducible manner. Dengue virus NS3 is a multifunctional protein playing a major role during viral replication. Both protease and helicase domains of NS3 are interacting with human and insect host proteins including innate immune components of the host machinery. We characterized the NS3 transgenic flies showing that NS3 expression did not affect fly development. To further study the links between NS3 and the innate immune response, we challenge the flies with gram-positive and gram-negative bacteria. Interestingly, the <i>Drosophila</i> transgenic flies expressing NS3 were more susceptible to bacterial infections than control flies. However ubiquitous or immune-specific NS3 expression affected neither the life span nor the response to a non-infectious stress of the flies. In conclusion, we generated a new <i>in vivo</i> system to study the functional impact of DENV NS3 protein on the innate immune response.
DOI: 10.6084/m9.figshare.1568746
title: Asymmetric bulges and mismatches determine 20-nt microRNA formation in plants

description: Plant microRNAs (miRNAs) are predominantly 21 nucleotides (nt) long but non-canonical lengths of 22 and 20 nt are commonly observed in diverse plant species. While miRNAs longer than 21 nt can be attributed to the neglect of unpaired bases within asymmetric bulges by the ruler function of DICER-LIKE 1 (DCL1), how 20-nt miRNA is generated remains obscure. Analysis of small RNA data revealed that 20-nt miRNA can be divided into 3 main groups featured by atypical 3′ overhangs or shorter duplex regions. Asymmetric bulges or mismatches at specific positions are commonly observed within each group and were shown to be crucial for 20-nt miRNA formation. Analysis of DCL1 cleavage sites on 20-nt miRNA precursors suggests that these determinants might alter precursor structure or trigger 3′-end decay of mature miRNA. The results herein advance our understanding of miRNA biogenesis and demonstrate that the effect of asymmetric bulges on miRNA length could be position-dependent.
DOI: 10.6084/m9.figshare.1568765.v6
title: Expression of dengue virus NS3 protein in <i>Drosophila</i> alters its susceptibility to infection

description: We developed a <i>Drosophila</i> model in which the dengue virus NS3 protein is expressed in a tissue specific and inducible manner. Dengue virus NS3 is a multifunctional protein playing a major role during viral replication. Both protease and helicase domains of NS3 are interacting with human and insect host proteins including innate immune components of the host machinery. We characterized the NS3 transgenic flies showing that NS3 expression did not affect fly development. To further study the links between NS3 and the innate immune response, we challenge the flies with gram-positive and gram-negative bacteria. Interestingly, the <i>Drosophila</i> transgenic flies expressing NS3 were more susceptible to bacterial infections than control flies. However ubiquitous or immune-specific NS3 expression affected neither the life span nor the response to a non-infectious stress of the flies. In conclusion, we generated a new <i>in vivo</i> system to study the functional impact of DENV NS3 protein on the innate immune response.
DOI: 10.6084/m9.figshare.1568745
title: RAID3 - An interleukin-6 receptor-binding aptamer with post-selective modification-resistant affinity

description: Aptamers are an emerging class of highly specific targeting ligands. They can be selected <i>in vitro</i> for a large variety of targets, ranging from small molecules to whole cells. Most aptamers selected are nucleic acid-based, allowing chemical synthesis and easy modification. Although their properties make them interesting drug candidates for a broad spectrum of applications and an interesting alternative to antibodies or fusion proteins, they are not yet broadly used. One major drawback of aptamers is their susceptibility to abundant serum nucleases, resulting in their fast degradation in biological fluids. Using modified nucleic acids has become a common strategy to overcome these disadvantages, greatly increasing their half-life under cell culture conditions or even <i>in vivo</i>. Whereas pre-selective modifications of the initial library for aptamer selection are relatively easy to obtain, post-selective modifications of already selected aptamers are still generally very labor-intensive and often compromise the aptamers ability to bind its target molecule.Here we report the selection, characterization and post-selective modification of a 34 nucleotide (nt) RNA aptamer for a non-dominant, novel target site (domain 3) of the interleukin-6 receptor (IL-6R). We performed structural analyses and investigated the affinity of the aptamer to the membrane-bound and soluble forms (sIL-6R) of the IL-6R. Further, we performed structural analyses of the aptamer in solution using small-angle X-ray scattering and determined its overall shape and oligomeric state. Post-selective exchange of all pyrimidines against their 2′-fluoro analogs increased the aptamers stability significantly without compromising its affinity for the target protein. The resulting modified aptamer could be shortened to its minimal binding motif without loss of affinity.
DOI: 10.6084/m9.figshare.1568765
title: Expression of dengue virus NS3 protein in <i>Drosophila</i> alters its susceptibility to infection

description: We developed a <i>Drosophila</i> model in which the dengue virus NS3 protein is expressed in a tissue specific and inducible manner. Dengue virus NS3 is a multifunctional protein playing a major role during viral replication. Both protease and helicase domains of NS3 are interacting with human and insect host proteins including innate immune components of the host machinery. We characterized the NS3 transgenic flies showing that NS3 expression did not affect fly development. To further study the links between NS3 and the innate immune response, we challenge the flies with gram-positive and gram-negative bacteria. Interestingly, the <i>Drosophila</i> transgenic flies expressing NS3 were more susceptible to bacterial infections than control flies. However ubiquitous or immune-specific NS3 expression affected neither the life span nor the response to a non-infectious stress of the flies. In conclusion, we generated a new <i>in vivo</i> system to study the functional impact of DENV NS3 protein on the innate immune response.
DOI: 10.6084/m9.figshare.1568765.v8
title: Expression of dengue virus NS3 protein in <i>Drosophila</i> alters its susceptibility to infection

description: We developed a <i>Drosophila</i> model in which the dengue virus NS3 protein is expressed in a tissue specific and inducible manner. Dengue virus NS3 is a multifunctional protein playing a major role during viral replication. Both protease and helicase domains of NS3 are interacting with human and insect host proteins including innate immune components of the host machinery. We characterized the NS3 transgenic flies showing that NS3 expression did not affect fly development. To further study the links between NS3 and the innate immune response, we challenge the flies with gram-positive and gram-negative bacteria. Interestingly, the <i>Drosophila</i> transgenic flies expressing NS3 were more susceptible to bacterial infections than control flies. However ubiquitous or immune-specific NS3 expression affected neither the life span nor the response to a non-infectious stress of the flies. In conclusion, we generated a new <i>in vivo</i> system to study the functional impact of DENV NS3 protein on the innate immune response.