cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cg8y6cvs3f.1
title: Urinary tract infection among people living with human immunodeficiency virus in hospitals in Addis Ababa and Adama, central Ethiopia

description: The data deposited was, the data used for the study aimed to address the lack of comprehensive data on urinary tract infections (UTIs) and antibacterial resistance among people living with human immunodeficiency virus (PLHIV) in low-income countries, specifically in central Ethiopia. It focused on investigating the prevalence of UTIs, identifying associated risk factors, determining the bacterial agents responsible for the infections, and analyzing the antibiotic susceptibility profiles of these bacteria.
A hospital-based cross-sectional study was conducted to recruit 688 PLHIV by simple random sampling method. Background information were gathered through interviews while clinical information were gathered from recent information sheets of patient charts using organized, pretested, and validated study tool. Midstream urine was collected aseptically and transported to Microbiology Laboratory of Aklilu Lemma Institute of Pathobiology within four hours of collection maintaining its cold chain. Standard conventional microbial culture methods and matrix-assisted laser desorption ionization-time of flight mass spectrometry were used to identify the bacterial isolates at the species level. Kirby Bauer’s disc diffusion method was used to determine the antibiotic susceptibility profile of the bacterial isolates based on the interpretation guideline of Clinical Laboratory Standard Institute. Logistic regression was used to examine factors associated with the occurrence of UTIs with statistical significance level declared at P &lt; 0.05. Out of 688 PLHIV involved in the current study, (n= 144; 20.9%) were positive for UTIs, where the majority were asymptomatic for UTIs. In the multivariable logistic regression analysis, only HIV RNA ≥ 200 copies/ml and being symptomatic for UTIs during the study period were found associated with the occurrence of UTIs. 
The dominant bacterial species isolated were E. coli (n= 65; 43%) followed by E. faecalis (n= 16; 10.6%), and K. pneumoniae (n= 11; 7.3%). Over half of the E. coli isolates were resistant to antibiotics like gentamicin (n= 44; 67.7%), amikacin (n= 46; 70.8%), nalidixic acid (n= 42; 64.6%), ciprofloxacin (n= 40; 61.5%), and azithromycin (n= 45; 69.2%). All of the K. pneumoniae isolates (n= 11; 100%), (n = 6; 54.5%), and (n= 7; 63.6%) were resistant to [amoxicillin as well as amoxicillin + clavulanic acid], ceftriaxone, and sulfamethoxazole + trimethoprim, respectively. All the S. aureus isolates were resistant to cefoxitin, which implies methicillin-resistant (MRSA). The high rate of UTIs and antibiotic resistance revealed in the current study, need public health interventions like educating the population about preventive measures, and importance of early treatment of UTIs. Our findings also highlight the need to provide UTIs screening service for PLHIV, and healthcare providers should adopt antibiotic stewardship programs to promote and ensure their appropriate and judicious use.
DOI: 10.17632/hy5pmx39g5.1
title: CircRNA sequencing in hypertrophic myocardium from abdominal aortic coarctation surgical mice

description: Pathological cardiac hypertrophy is a maladaptive cardiac remodeling in variable clinical diseases involving Hypertension, Cardiomyopathy and so on, which was still a major public healthcare problem with high morbidity and mortality in the worldwide.There is an unmet need to detect underlying heart failure sensitively and to reverse myocardial enlargement and fibrosis effectively. Several stimuli and signaling mechanisms have been postulated in pathological cardiac hypertrophy on genome and transcriptional levels, such as impaired Ca2+ handling, mitochondrial dysfunction,sm6A methyletation and so on. Researchers are devoting to find new targets to resolve the knotty matter and breakthroughs are made via next-generation sequencing, non-coding RNAs into researchers' fields of vision，and increasing mumber of circular RNA was detected in cardiac hypertrophy.
We established pressure overloading-induced cardiac hypertrophy model in C57B/L mice at 8 weeks by AAC(abdominal aortic coarctation) surgery and ventricle myocardium were sent for cricRNA sequencing(both for 4 samples in sham and surgery group).We finally identified a total of 9780 circRNAs in two groups,among which 5 molecules were identified to have increased expression and 25 molecules to have decreased expression compare to sham group.
DOI: 10.15468/dl.xqf2up
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Coleoptera collection (EC) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "Geometry POLYGON((44.92112 -13.08048,45.32553 -13.08048,45.32553 -12.59262,44.92112 -12.59262,44.92112 -13.08048))"
 ]
}

 The dataset includes 55 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004255-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/36swjjrktm.1
title: In situ PLL-g-PEG functionalized nanopore for enhancing protein detection

description: The Open Data shared file comprises an extensive array of valuable components and information related to various aspects. It includes:

1. Design of Flow Cell: Detailed documentation and specifications pertaining to the design principles and configurations of the flow cell.
2. Assembly Processes: Comprehensive guidelines and instructions for the assembly of relevant components, ensuring proper integration and functionality.
3. Cleaning Techniques: Thorough procedures and methodologies for effectively cleaning and maintaining the equipment and components associated with the data file.
4. Ex-situ and In-situ Functionalization: In-depth insights into the methodologies and protocols employed for functionalizing the materials and surfaces both ex-situ and in-situ.
5. Lifetime Characterization: Rigorous methods and techniques for assessing and characterizing the operational lifetime and durability of the materials and devices.
6. Measurement Devices: Detailed descriptions and specifications of the instruments and equipment utilized for measuring relevant parameters and obtaining accurate data.
7. Analysis Methods: Robust analytical approaches and algorithms employed to extract meaningful insights from the collected data, ensuring accurate interpretation and evaluation.
8. Data analysis: Comprehensive datasets and associated information, facilitating further research, analysis, and exploration.
DOI: 10.17632/x347y36n49.1
title: Escherichia coli small heat shock protein IbpA plays a role in regulating the heat shock response by controlling the translation of σ32

description: raw _gel_images
DOI: 10.17632/v2tdnfcz5d.1
title: Investigating changes of forest AGB

description: The point clouds (*.rar) of the three sample plots of Moso bamboo stand, China fir stand, and mixed stand used in this study.
DOI: 10.17632/97cpczdg2r.1
title: OCEAN - Open-access validated models from experimental data of wave energy system arrays

description: Open-access validated models from experimental data of wave energy system arrays
DOI: 10.17632/97cpczdg2r.2
title: OCEAN - Open-access validated models from experimental data of wave energy system arrays

description: One of the key steps towards economic feasibility of wave energy conversion technology concerns scaling up to farms of multiple devices, in the attempt to reduce installation costs by sharing infrastructure, and a consequent drop in levelised cost of energy. Moreover, whenever wave energy systems are deployed in proximity (in so-called arrays), the exploitation of the hydrodynamic interactions between single devices is fully enabled, potentially increasing the final energy outcome. To achieve this in real (operational) time, the employed energy-maximising control strategies require control-oriented array models, able to efficiently describe the dynamics of these interconnected systems in a representative fashion. This can be, nonetheless, a difficult task when considering first principles alone, under small motion assumptions, for modelling purposes. Recognising the uncertainty associated to array numerical models obtained from the linearisation of simplified system equations around their equilibria, this dataset provides models of several array configurations identified following a frequency domain approach on the basis of experimental data. Tailored tests on laboratory-scale devices have been designed and conducted in the Aalborg University (Denmark) wave tank facility, with the purpose of performing representative system identification of the wave energy systems arrays. The obtained models are validated on different representative sea states configurations, in controlled and uncontrolled motion operational conditions. The validation results are fully discussed and analysed in terms of standard error measures and time lag, while the obtained models are made freely accessible via this repository (named OCEAN), in the attempt to openly provide validated models for different array configurations. The discussion, and validation analysis can be found in the paper by the same authors "Data-based modelling of arrays of wave energy systems: Experimental tests, models, and validation", 2024, Control Engineering Practice, doi: 10.1016/j.conengprac.2024.105949 .
DOI: 10.17632/26jsdz32hc.1
title: 3-Monochloropropane-1,2-diol reduced bioaccessibility of sn-2 palmitate via bounding with pancreatic lipase in infant formula during gastrointestinal digestion

description: Infant formula contains 3-monochloropropane-1,2-diol esters which are formed during the deodorization step of vegetable oils refining. European Food Safety Authority stated 3-monochloropropane-1,2-diol esters can be hydrolyzed in the gastrointestinal tract to free form 3-monochloropropane-1,2-diol, which has potential toxicity and can be rapidly absorbed. 3-Monochloropropane-1,2-diol (0.0-103.6 μg kg-1) was detected from 120 goat milk-based infant formula samples after digestion. Evaluating the effect of 3-monochloropropane-1,2-diol on nutrition absorption is a prerequisite for establishing the effective management strategies. A total of 66 crucial lipid molecules associated with 3-monochloropropane-1,2-diol were identified based on Debiased Sparse Partial Correlation analysis. 3-Monochloropropane-1,2-diol affected triglyceride hydrolyzation and increased the concentration of undigested sn-2 palmitate (9.57 to 17.06 mg kg-1). 3-Monochloropropane-1,2-diol reduced the bioaccessibility of fatty acids and more short- (31.42 to 58.02 mg kg-1) and medium-chain fatty acids (17.03 to 26.43 mg kg-1) remained unabsorbed. The formation of 3-monochloropropane-1,2-diol ester-pancreatic lipase with the binding energy of -4.9 kcal mol-1 was more stable than triglyceride-pancreatic lipase (-4.0 kcal mol-1), affecting triglyceride hydrolyzation. 3-Monochloropropane-1,2-diol was bound to Glu13 and Asp331 residues of the pancreatic lipase via hydrogen bonds, which resulted in a conformational change of pancreatic lipase and spatial shielding effect. The existence of the spatial shielding effect reduced the accessibility of pancreatic lipase and further affected triglyceride hydrolyzation. These findings indicated 3-monochloropropane-1,2-diol obstructed nutrient acquisition and laid the foundation for the subsequent nutrition enhancement design.
DOI: 10.17632/69tmzvgtxj.1
title: LINF_210028200

description: peroxin 14 | PEX14; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hcxvkfncgc.2
title: Count and species records of insects and spiders species from wetland sites in Aspromonte Mountain (Calabria region – South Italy)

description: The specific faunal surveyed was presented in datasets in order to understand the importance of the presence of insects and spiders many of them associated in inland aquatic environments of a Mediterranean mountain. The data obtained highlight a rich specific insects and spiders component often-in Habitat directive. The data will provide useful information to outline strategies for the conservation and the management of these sites already at risk by climate change. The collected data follow within the execution of the specific wetland area project funded by Aspromonte National Park “Progetto di studio e ricerca sulla biodiversità degli ambienti umidi del Parco Nazionale dell'Aspromonte“ (Programma operativo FESR Calabria 2014/2020 OT 6 Azione 6.5.A1 - Monitoraggio Sic Terrestri in Aree Protette, - Regione Calabria). The dataset includes 4.731 count and 473 species collected and identified with 400 insects, 1 millipedes, centipedes and 71 spiders.
DOI: 10.17632/f3j6shnyft
title: Massive carbon storage in the upper mantle via diapirism of subducted continental sediments

description: Contents of this file 

Table S1 Ages of the ultrapotassic-potassic lavas in the Payang and Zabuye areas, southern Tibet.
Table S2 Whole-rock major (wt.%)- and trace-element (ppm) data of the ultrapotassic-potassic lavas from the Payang, Sailipu, Zabuye, and Renbu areas and subduction complex, southern Tibet.
Table S3 Whole-rock Sr-Nd-Pb-Hf isotopic composition of the ultrapotassic-potassic lavas from the Payang, Sailipu, Zabuye, and Renbu areas and subduction complex, southern Tibet. 
Table S4 Mg-Zn isotope data for the ultrapotassic-potassic lavas from the Payang, Sailipu, Zabuye, and Renbu areas and subduction complex, southern Tibet. 
Table S5 Major-element (wt.%)- and trace-element (ppm) data of olivine from the Sailipu ultrapotassic lavas, southern Tibet.
DOI: 10.17632/f3j6shnyft.1
title: Massive carbon storage in the upper mantle via diapirism of subducted continental sediments

description: Contents of this file 

Table S1 Ages of the ultrapotassic-potassic lavas in the Payang and Zabuye areas, southern Tibet.
Table S2 Whole-rock major (wt.%)- and trace-element (ppm) data of the ultrapotassic-potassic lavas from the Payang, Sailipu, Zabuye, and Renbu areas and subduction complex, southern Tibet.
Table S3 Whole-rock Sr-Nd-Pb-Hf isotopic composition of the ultrapotassic-potassic lavas from the Payang, Sailipu, Zabuye, and Renbu areas and subduction complex, southern Tibet. 
Table S4 Mg-Zn isotope data for the ultrapotassic-potassic lavas from the Payang, Sailipu, Zabuye, and Renbu areas and subduction complex, southern Tibet. 
Table S5 Major-element (wt.%)- and trace-element (ppm) data of olivine from the Sailipu ultrapotassic lavas, southern Tibet.
DOI: 10.17632/67p5pz4ssd.1
title: LINF_210028300

description: MtQ subunit; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j5y2s2yrtr.1
title: LINF_210028400

description: BolA-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wx3x8bg2w8.1
title: LINF_220005200

description: hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r7vgts3zzg.1
title: LDHU3_02.0720

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/zp6htysmy2.1
title: Microcosmos of plastic pellets colonisations by E. coli and seawater bacteria

description: High-throughput sequencing data of the metabarcoding of the V4 region of the 16S rRNA gene amplified from DNA sample extracts using the primers from the Earth Microbiome Project [515F (Parada et al., 2016) (5’- GTGYCAGCMGCCGCGGTAA-3’) and 806R (Apprill et al., 2015) (5’-GGACTACNVGGGTWTCTAAT-3’)] of the microbial communities of a colonisation experiment of environmental plastic pellets with E. coli strains and seawater bacteria.
DOI: 10.17632/jdxj93nk6w.1
title: LDHU3_02.0740

description: ARPC4 | Arp2/3 complex subunit 4; Leishmania donovani (HU3 strain)
DOI: 10.17632/389pwz4v7z.1
title: LDHU3_02.0730

description: TPR (tetratricopeptide) domain-containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/d4s4897j46.1
title: Raw dataset of light control effects on semen proteomic of the red-winged tinamou

description: These data show profile proteomic of sperm and seminal plasma of red-winged tinamou (Rhynchotus rufescens) under the effects of light (natural light for controls versus 16 hours of light and 8 hours of darkness in treated birds), during of reproductive season. 20 males were randomly allocated to be Control (n = 10) or Artificial light (n = 10) groups. To sperm proteomics was used one sample from 10 birds (6 Control and 4 Artificial light groups) and for proteomics of seminal plasma were used two pools prepared with same samples from Artificial light group, the samples of the Control group had an insufficient volume to perform the proteomics. For this reason, the proteomics of seminal plasma was descriptive. Sperm and seminal plasma samples were individually prepared for proteomics (ESI Q-TOF MS/MS).
DOI: 10.17632/m27yst9z9z.1
title: LINF_210028600

description: histone deacetylase | HDAC3; Leishmania infantum (strain JPCM5)
DOI: 10.17632/xm3njtmpmd.1
title: Modular Gas-Regulation System for Generating Hypoxia Chambers Capable of Regulating Oxygen and Carbon Dioxide Partial Pressures

description: 3-zone hypoxia chamber with independent control of oxygen and carbon dioxide partial pressure. The construction of this chamber and the electronic controllers that maintain the experimentally set oxygen and carbon dioxide partial pressure is available at HardwareX or by contacting mlockett@unc.edu.
DOI: 10.17632/wcx4t8twwn.1
title: FGF21 blunts cardiac ischemia/ reperfusion injury by promoting autophagic flux via Stat1/Irgm1 pathway

description: Fibroblast growth factor 21 (FGF21), as a key metabolic hormone in the control of fatty acid and glucose metabolism, has been shown to be a potent cardioprotective agent against cardiovascular diseases. Here, in myocardial ischemia/reperfusion (I/R) model mice, we demonstrated that FGF21 alleviated myocardial I/R injury, while FGF21 knockout exacerbated this injury. Mechanistically, FGF21 can improve myocardial autophagic flux by regulating autophagosome processing, thereby alleviating myocardial injury. Furthermore, the downregulation of IRGM1 in FGF21-/- mice during I/R was associated with increased impairment of autophagic flux and autophagosome processing, which could be rescued by rhFGF21 via regulating Irgm1 expression. Meanwhile, the beneficial effect of rhFGF21 was limited in Irgm1 knockdown neonatal rat cardiomyocytes. Collectively, FGF21 knockout exacerbates myocardial I/R injury by intensifying the impairment of autophagic flux through Irgm1 signaling pathway. Activating FGF21 or Irgm1 might thus serve as promising therapeutic option to rescue myocardial I/R injury.
DOI: 10.17632/tt89d72n5b.1
title: Extreme As partitioning in pyrite from low-As fluids

description: The data presented here includes all tabulated data contained in the manuscript draft entitled "Extreme As partitioning in pyrite from low-As fluid" by Martin Kutzschbach, Frederik Dunkel, Christof Kusebauch, Ferry Schiperski, Frederik Börner, Henrik Drake, and Manuel Keith and the associated supplemantary material 

Additionally it includes the input codes for the PhreeqC calculation of As-speciation and Mineral stabilities presented in Figure 5, all literature data used to construct Figure 7 and the detailed results of the modelling of As sequestration from fluids by formation of pyrite as a function of fluid volume and DAs (py/fluid) values. presented in Figure 8.

Abstract of the manuscript draft:

Pyrite, an ubiquitous sulfide mineral found in diverse geological settings, holds great significance in the formation of Au deposits and the safe utilization of groundwater due to its remarkable ability to incorporate substantial amounts of As. However, despite its importance, there remains a dearth of fundamental data on the partitioning of As between pyrite and fluid, which is key for accurately modeling the As distribution in these environments 
Here, we present new insights into the partitioning behavior of As between pyrite and fluid at conditions that mimic natural fluid systems. Pyrite was synthesized by replacement of natural siderite in hydrothermal experiments at 200°C and pH 5 applying a wide range of fluid As concentrations spanning from 0.001 to 100 µg/g. The As distribution and concentration in synthetic pyrite was analyzed by quantitative LA-ICP-MS mapping providing a high spatial resolution and sensitivity at 2-3 µm image pixel size at a detection limit of ~1 µg/g at the single pixel scale. Pyrite-fluid partition coefficients (DAs(py/fluid)) based on the As concentration of the synthetic pyrite and the experimental fluid agree with previously published data for high fluid As concentrations of 1 µg/g to 100 µg/g (DAs &lt; 2000). However, at low As concentrations in the experimental fluid (&lt;1 µg/g), a steep increase in the DAs(py/fluid) values of up to ~41,000 was detected, demonstrating a high degree of fractionation of As into pyrite. This is a yet unknown relation that holds significant implications, but which has important implications for natural fluid systems that frequently exhibit comparable low fluid As concentrations. Our findings contribute to a better understanding of As sinks and its possible mobilization, which is crucial for the formation and fingerprinting of mineral deposits and the secure utilization of groundwater resources.
DOI: 10.17632/mjdhtfgf68.1
title: LINF_220008100

description: Choline/Carnitine o-acyltransferase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/23gdp9785r.1
title: LINF_220007200

description: amino acid transporter | AAT22; Leishmania infantum (strain JPCM5)
DOI: 10.17632/747cmtrrfm.1
title: LINF_220007100

description: protein with domain of unknown function (DUF1736); Leishmania infantum (strain JPCM5)
DOI: 10.17632/jhp32bd7t4.1
title: LDHU3_02.0770

description: Glutamate semialdehyde dehydrogenase; Leishmania donovani (HU3 strain)
DOI: 10.17632/stcztggnnp.1
title: Seattle ALS Patient Profile Database (SALSPPD)

description: The Seattle Amyotrophic Lateral Sclerosis (ALS) Patient Profile Database is a rich longitudinal dataset of ALS patients (n = 143) and their partners (spouses, significant others, or caregivers; n = 123) from clinics in Seattle, WA; San Francisco, CA; and Philadelphia, PA. The purpose of the study was to characterize the psychosocial and physical natural history of ALS and the interactions between them. Participants were interviewed in their homes every 3 months for up to 18 months between March 1987 and August 1989. Follow-up phone calls were completed in 1990, 1994, and 2008, primarily to ascertain patient outcomes.

See ReadMe file for information on usage of the database.

Data include information on both exposures and outcomes. See Data Dictionary for full listing.

Domain Contents Examples
ALS ALS Severity Scale Scores lower extremities, upper extremities
BHX Behavioral History alcohol and tobacco use
COG Social Cognition attitudes, beliefs, personality from informant
DDV Disease Devices feeding tube, respirator
DEM Demographics age, education
DHX Disease History symptom onsets, forced vital capacity
DTX Disease Treatments providers, treatments
FAM Family Structure marital status, number of children
FHX Family History neurological diseases, cancer, CVD
MHX Medical History infections, hospitalizations, surgeries
OUT Outcomes vital status
PPF Psychiatric and 
 Psychological Functions appraisals, coping
PSY Psychological Health anger, depression, body appraisal
SRA Social Role Activity hours in different activities, social roles
SSP Social Support support group attendance, social support
STU Study Variables completion, time to visits, study site
DOI: 10.17632/k9rwwmppv3.1
title: LDHU3_02.0820

description: DNA-directed RNA polymerase III subunit RPC3; Leishmania donovani (HU3 strain)
DOI: 10.17632/ps2z5ydk2m.1
title: LDHU3_02.0790

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)