cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24174779.v1
title: Raw data Frozen & Borax_Specimens from All-a-glow: spectral characteristics confirm widespread fluorescence for mammals

description: Mammalian fluorescence has been reported from numerous species of monotreme, marsupial and placental mammal. However, it is unknown how widespread this phenomenon is among mammals, it is unclear for many species if these observations of ‘glowing’ are true fluorescence and the biological function of fluorescence remains undetermined. We examined a wide range of mammal species held in a museum collection for the presence of apparent fluorescence using UV light, and then analysed a subset of preserved and non-preserved specimens by fluorescent spectroscopy at three different excitation wavelengths to assess whether the observations were fluorescence or optical scatter, and the impact of specimen preservation. We also evaluated if fluorescence was related to biological traits. We found that fluorescence is widespread in mammalian taxa; we identified examples of the phenomena among 125 species representing all 27 living mammalian orders and 79 families. For a number of model species, there was no evidence of a corresponding shift in the emission spectra when the wavelength of excitation was shifted, suggesting that observations of ‘glowing’ mammals were indeed fluorescence. Preservation method impacted the intensity of fluorescence. Fluorescence was most common and most intense among nocturnal species and those with terrestrial, arboreal and fossorial habits, with more of their body being more fluorescent. It remains unclear if fluorescence has any specific biological role for mammals. It appears to be an ubiquitous property of unpigmented fur and skin but may function to make these areas appear brighter therefore enhance visual signalling, especially for nocturnal species.
DOI: 10.6084/m9.figshare.24174794
title: Raw data Preserved_Specimens from All-a-glow: spectral characteristics confirm widespread fluorescence for mammals

description: Mammalian fluorescence has been reported from numerous species of monotreme, marsupial and placental mammal. However, it is unknown how widespread this phenomenon is among mammals, it is unclear for many species if these observations of ‘glowing’ are true fluorescence and the biological function of fluorescence remains undetermined. We examined a wide range of mammal species held in a museum collection for the presence of apparent fluorescence using UV light, and then analysed a subset of preserved and non-preserved specimens by fluorescent spectroscopy at three different excitation wavelengths to assess whether the observations were fluorescence or optical scatter, and the impact of specimen preservation. We also evaluated if fluorescence was related to biological traits. We found that fluorescence is widespread in mammalian taxa; we identified examples of the phenomena among 125 species representing all 27 living mammalian orders and 79 families. For a number of model species, there was no evidence of a corresponding shift in the emission spectra when the wavelength of excitation was shifted, suggesting that observations of ‘glowing’ mammals were indeed fluorescence. Preservation method impacted the intensity of fluorescence. Fluorescence was most common and most intense among nocturnal species and those with terrestrial, arboreal and fossorial habits, with more of their body being more fluorescent. It remains unclear if fluorescence has any specific biological role for mammals. It appears to be an ubiquitous property of unpigmented fur and skin but may function to make these areas appear brighter therefore enhance visual signalling, especially for nocturnal species.
DOI: 10.6084/m9.figshare.24174794.v1
title: Raw data Preserved_Specimens from All-a-glow: spectral characteristics confirm widespread fluorescence for mammals

description: Mammalian fluorescence has been reported from numerous species of monotreme, marsupial and placental mammal. However, it is unknown how widespread this phenomenon is among mammals, it is unclear for many species if these observations of ‘glowing’ are true fluorescence and the biological function of fluorescence remains undetermined. We examined a wide range of mammal species held in a museum collection for the presence of apparent fluorescence using UV light, and then analysed a subset of preserved and non-preserved specimens by fluorescent spectroscopy at three different excitation wavelengths to assess whether the observations were fluorescence or optical scatter, and the impact of specimen preservation. We also evaluated if fluorescence was related to biological traits. We found that fluorescence is widespread in mammalian taxa; we identified examples of the phenomena among 125 species representing all 27 living mammalian orders and 79 families. For a number of model species, there was no evidence of a corresponding shift in the emission spectra when the wavelength of excitation was shifted, suggesting that observations of ‘glowing’ mammals were indeed fluorescence. Preservation method impacted the intensity of fluorescence. Fluorescence was most common and most intense among nocturnal species and those with terrestrial, arboreal and fossorial habits, with more of their body being more fluorescent. It remains unclear if fluorescence has any specific biological role for mammals. It appears to be an ubiquitous property of unpigmented fur and skin but may function to make these areas appear brighter therefore enhance visual signalling, especially for nocturnal species.
DOI: 10.5281/zenodo.8365223
title: Dataset for "Stability and wave velocity of novel iron magnesium oxide (Mg, Fe)2O3.5 in the lower mantle"

description: Elasticity and wave velocity data
DOI: 10.5281/zenodo.8365222
title: Dataset for "Stability and wave velocity of novel iron magnesium oxide (Mg, Fe)2O3.5 in the lower mantle"

description: Elasticity and wave velocity data
DOI: 10.5281/zenodo.8367266
title: Response of exogenous melatonin on transcription and metabolism of soybean under drought stress

description: <strong>Response of exogenous melatonin </strong><strong>on</strong><strong> transcription and metabolism of soybean under drought stress</strong>
DOI: 10.5281/zenodo.8367265
title: Response of exogenous melatonin on transcription and metabolism of soybean under drought stress

description: <strong>Response of exogenous melatonin </strong><strong>on</strong><strong> transcription and metabolism of soybean under drought stress</strong>
DOI: 10.5281/zenodo.6611869
title: UAS survey on a small earthen dam in Romania

description: The present dataset provides the UAS imagery and the GPCs of a survey carried out within the HARMONIOUS COST Action on the earthen dam of Pischia in Romania. The subset could be used to test SfM methods and the results can be compared with those provided on the manuscript by Manfreda et al. (2019). It important to clarify that this is just a subset of the series of surveys described in the mentioned manuscript and is made available for training exercises. Reference Manfreda, S., P. Dvorak, J. Mullerova, S. Herban, P. Vuono, J.J. Arranz Justel, M. Perks, <strong>Assessing the Accuracy of Digital Surface Models Derived from Optical Imagery Acquired with Unmanned Aerial Systems</strong>, <strong>Drones</strong>, 3(1), 15; (doi: 10.3390/drones3010015), 2019.
DOI: 10.5281/zenodo.6611868
title: UAS survey on a small earthen dam in Romania

description: The present dataset provides the UAS imagery and the GPCs of a survey carried out within the HARMONIOUS COST Action on the earthen dam of Pischia in Romania. The subset could be used to test SfM methods and the results can be compared with those provided on the manuscript by Manfreda et al. (2019). It important to clarify that this is just a subset of the series of surveys described in the mentioned manuscript and is made available for training exercises. Reference Manfreda, S., P. Dvorak, J. Mullerova, S. Herban, P. Vuono, J.J. Arranz Justel, M. Perks, <strong>Assessing the Accuracy of Digital Surface Models Derived from Optical Imagery Acquired with Unmanned Aerial Systems</strong>, <strong>Drones</strong>, 3(1), 15; (doi: 10.3390/drones3010015), 2019.
DOI: 10.5517/ccdc.csd.cc2gsvrw
title: CCDC 2288009: Experimental Crystal Structure Determination

description: Related Article: Dominic Brightwell|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24174830
title: FIGS.tar from Coupled-mode separation of multiply scattered wavefield components in two-dimensional waveguides

description: tar archive with scripts for generating computational results
DOI: 10.6084/m9.figshare.24174830.v1
title: FIGS.tar from Coupled-mode separation of multiply scattered wavefield components in two-dimensional waveguides

description: tar archive with scripts for generating computational results
DOI: 10.6084/m9.figshare.24174833
title: rpressX.tar from Coupled-mode separation of multiply scattered wavefield components in two-dimensional waveguides

description: tar archive with fortran codes
DOI: 10.6084/m9.figshare.24174833.v1
title: rpressX.tar from Coupled-mode separation of multiply scattered wavefield components in two-dimensional waveguides

description: tar archive with fortran codes
DOI: 10.6084/m9.figshare.24174836
title: read.me from Coupled-mode separation of multiply scattered wavefield components in two-dimensional waveguides

description: basic information
DOI: 10.6084/m9.figshare.24174836.v1
title: read.me from Coupled-mode separation of multiply scattered wavefield components in two-dimensional waveguides

description: basic information
DOI: 10.6084/m9.figshare.24174743
title: Paired animal and human AMS dates from the Ardu II and Sope B I burials from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Paired AMS dates of animal and human bone collagen from the Ardu II and Sope B I CWC burials.
DOI: 10.6084/m9.figshare.24174743.v2
title: Paired animal and human AMS dates from the Ardu II and Sope B I burials from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Paired AMS dates of animal and human bone collagen from the Ardu II and Sope B I CWC burials.
DOI: 10.6084/m9.figshare.24174755.v1
title: ZooMS spectra from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Raw data of ZooMS measurements (MALDI-ToF-MS spectra).
DOI: 10.6084/m9.figshare.24174755
title: ZooMS spectra from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Raw data of ZooMS measurements (MALDI-ToF-MS spectra).
DOI: 10.6084/m9.figshare.24174758
title: Pottery organic residue data from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Complete dataset of pottery organic residue analysis from Estonian and Latvian 3rd millennium cal BCE reported in the article.
DOI: 10.6084/m9.figshare.24174758.v1
title: Pottery organic residue data from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Complete dataset of pottery organic residue analysis from Estonian and Latvian 3rd millennium cal BCE reported in the article.
DOI: 10.6084/m9.figshare.24174743.v1
title: Paired animal and human AMS dates from the Ardu II and Sope B I burials from Parallel worlds and mixed economies: multi-proxy analysis reveals complex subsistence systems at the Dawn of early farming in the northeast Baltic

description: Paired AMS dates of animal and human bone collagen from the Ardu II and Sope B I CWC burials.
DOI: 10.25387/g3.23787168
title: Supplemental Material for Singleton and Eisen, 2023

description: S1: Orthologous groups of proteins identified in 33 annotated <em>Drosophila</em> genomes using 4-clique percolation of the hit network derived from reciprocal pairwise BLAST searches. <br> S2: The initial alignments of all sequences in each orthologous group. <br> S3: The refined alignments of the representative sequences in each single copy orthologous group. <br> S4: The insertion phylo-HMM model parameters and the alignments of the single copy ortholog groups after trimming. <br> S5: The missing data phylo-HMM model parameters and the missing segments identified for each sequence in each single copy orthologous group. Missing segments are given as Python slices in the following form: start0-stop0,start1-stop1,\ldots,startn-stopn. If the slices field is empty, then no missing segments were identified in that sequence. <br> S6: The consensus phylogenetic trees derived from meta-alignments and fit using the LG, GTR, and GTR2 substitution models.
DOI: 10.25387/g3.23787168.v1
title: Supplemental Material for Singleton and Eisen, 2023

description: S1: Orthologous groups of proteins identified in 33 annotated <em>Drosophila</em> genomes using 4-clique percolation of the hit network derived from reciprocal pairwise BLAST searches. <br> S2: The initial alignments of all sequences in each orthologous group. <br> S3: The refined alignments of the representative sequences in each single copy orthologous group. <br> S4: The insertion phylo-HMM model parameters and the alignments of the single copy ortholog groups after trimming. <br> S5: The missing data phylo-HMM model parameters and the missing segments identified for each sequence in each single copy orthologous group. Missing segments are given as Python slices in the following form: start0-stop0,start1-stop1,\ldots,startn-stopn. If the slices field is empty, then no missing segments were identified in that sequence. <br> S6: The consensus phylogenetic trees derived from meta-alignments and fit using the LG, GTR, and GTR2 substitution models.
DOI: 10.6084/m9.figshare.14336735
title: Peltigera lichens from Karukinka Natural Park, Magallanes Region, Chile (2020, above tree line)

description: Peltigera lichen samples collected by the Microbial Ecology Lab (Universidad de Chile), from an area above tree line in the Karukinka Natural Park in 2020.
DOI: 10.6084/m9.figshare.14336735.v5
title: Peltigera lichens from Karukinka Natural Park, Magallanes Region, Chile (2020, above tree line)

description: Peltigera lichen samples collected by the Microbial Ecology Lab (Universidad de Chile), from an area above tree line in the Karukinka Natural Park in 2020.
DOI: 10.6084/m9.figshare.14336735.v4
title: Peltigera lichens from Karukinka Natural Park, Magallanes Region, Chile (2020, above tree line)

description: Peltigera lichen samples collected by the Microbial Ecology Lab (Universidad de Chile), from an area above tree line in the Karukinka Natural Park in 2020.
DOI: 10.6084/m9.figshare.24174876
title: Corrected Supplemental Table 1 of the Genetic Diversity and Iron-Metabolism of Staphylococcus hominis isolates originating from bovine quarter milk, rectal feces, and teat apices

description: Multiple comparisons for the interaction term for the statistical analysis for medium (tryptic soy broth (TSB), deferrated TSB (dTSB), and deferrated TSB supplemented with equine spleen derived ferritin (dTSBF) or human recombinant lacteferrin (dTSBL)) * strain <i>(Staphylococcus aureus</i> ATCC <i>25923 (SA), S. chromogenes (SCH) </i>IM<i>, </i>S. <i>chromogenes</i> TA, <i>S. hominis</i> (SH) QM, <i>S. hominis</i> TA, and S. <i>hominis</i> RF).
DOI: 10.6084/m9.figshare.24174940
title: Sinotte supplement compressed.zip from Selective enrichment of founding reproductive microbiomes allows extensive vertical transmission in a fungus-farming termite

description: Mutualistic coevolution can be mediated by vertical transmission of symbionts between host generations. Termites host complex gut bacterial communities with evolutionary histories indicative of mixed-mode transmission. Here, we document that vertical transmission of gut bacterial strains is congruent across parent to offspring colonies in four pedigrees of the fungus-farming termite <i>Macrotermes natalensis</i>. We show that 44% of the offspring colony microbiome, including more than 80 bacterial genera and pedigree-specific strains, are consistently inherited. We go on to demonstrate that this is achieved because colony-founding reproductives are selectively enriched with a set of non-random, environmentally sensitive and termite-specific gut microbes from their colonies of origin. These symbionts transfer to offspring colony workers with high fidelity, after which priority effects may influence the composition of the establishing microbiome. Termite reproductives thus secure transmission of complex communities of specific, co-evolved microbes that are critical to their offspring colonies. Extensive yet imperfect inheritance implies that the maturing colony benefits from acquiring environmental microbes to complement combinations of termite, fungus and vertically transmitted microbes; a mode of transmission that is emerging as a prevailing strategy for hosts to assemble complex adaptive microbiomes.
DOI: 10.6084/m9.figshare.24174940.v1
title: Sinotte supplement compressed.zip from Selective enrichment of founding reproductive microbiomes allows extensive vertical transmission in a fungus-farming termite

description: Mutualistic coevolution can be mediated by vertical transmission of symbionts between host generations. Termites host complex gut bacterial communities with evolutionary histories indicative of mixed-mode transmission. Here, we document that vertical transmission of gut bacterial strains is congruent across parent to offspring colonies in four pedigrees of the fungus-farming termite <i>Macrotermes natalensis</i>. We show that 44% of the offspring colony microbiome, including more than 80 bacterial genera and pedigree-specific strains, are consistently inherited. We go on to demonstrate that this is achieved because colony-founding reproductives are selectively enriched with a set of non-random, environmentally sensitive and termite-specific gut microbes from their colonies of origin. These symbionts transfer to offspring colony workers with high fidelity, after which priority effects may influence the composition of the establishing microbiome. Termite reproductives thus secure transmission of complex communities of specific, co-evolved microbes that are critical to their offspring colonies. Extensive yet imperfect inheritance implies that the maturing colony benefits from acquiring environmental microbes to complement combinations of termite, fungus and vertically transmitted microbes; a mode of transmission that is emerging as a prevailing strategy for hosts to assemble complex adaptive microbiomes.
DOI: 10.5522/04/24174177
title: Digital Humanities Journals Dataset (1966-2017)

description: This bibliometric dataset comprises metadata of research articles published by three prominent Digital Humanities journals: Computers and the Humanities (Chum) 1966 to 2004, Digital Scholarship in the Humanities (DSH) 1986 to 2017, and Digital Humanities Quarterly (DHQ) 2007 to 2017. It has been manually compiled with information such as 'article title', 'authors', 'affiliations', 'year', 'volume number', 'issue number', 'abstract', and 'keywords'. Many records within the dataset are not indexed in the Web of Science citation index. An author co-citation network is constructed based on this dataset, and the node and edge information of the network is also included.
DOI: 10.5522/04/24174177.v1
title: Digital Humanities Journals Dataset (1966-2017)

description: This bibliometric dataset comprises metadata of research articles published by three prominent Digital Humanities journals: Computers and the Humanities (Chum) 1966 to 2004, Digital Scholarship in the Humanities (DSH) 1986 to 2017, and Digital Humanities Quarterly (DHQ) 2007 to 2017. It has been manually compiled with information such as 'article title', 'authors', 'affiliations', 'year', 'volume number', 'issue number', 'abstract', and 'keywords'. Many records within the dataset are not indexed in the Web of Science citation index. An author co-citation network is constructed based on this dataset, and the node and edge information of the network is also included.
DOI: 10.6084/m9.figshare.24174952
title: Data from Mitigating the impacts of street lighting on biodiversity and ecosystem functioning

description: Invertebrate abundances sampled from grass and hedgerow habitats under paired (n = 9) lit and unlit treatments at Cockle Park Farm, Newcastle University, in Oct-Nov 2021 (mean abundances presented in Figure 2).
DOI: 10.6084/m9.figshare.24174952.v1
title: Data from Mitigating the impacts of street lighting on biodiversity and ecosystem functioning

description: Invertebrate abundances sampled from grass and hedgerow habitats under paired (n = 9) lit and unlit treatments at Cockle Park Farm, Newcastle University, in Oct-Nov 2021 (mean abundances presented in Figure 2).
DOI: 10.6084/m9.figshare.24174939
title: Untitled1.sav

description: Data set
DOI: 10.6084/m9.figshare.24174939.v1
title: Untitled1.sav

description: Data set
DOI: 10.6084/m9.figshare.24174973
title: Raw data_1 from A tumour-spheroid manufacturing and cryopreservation process that yields a highly reproducible product ready for direct use in drug screening assays

description: If it were possible to purchase tumour-spheroids as a standardized product, ready for direct use in assays, this may contribute to greater research reproducibly, potentially reducing costs. Herein, we describe a workflow where uniformly sized cancer tumour-spheroids are mass-produced using microwell culture, cryopreserved with high viability, and then cultured in neutral buoyancy media for drug testing. C4-2B prostate cancer or MCF-7 breast cancer cells amalgamated into uniform tumour-spheroids after 48 h of culture. Tumour-spheroids formed from 100 cells each tolerated the cryopreservation process marginally better than tumour-spheroids formed from 200 or 400 cells. Post-thaw, tumour-spheroid metabolic activity was significantly reduced, suggesting mitochondrial damage. Metabolic function was rescued by thawing the tumour-spheroids into medium supplemented with 10 µM <i>N</i>-Acetyl-l-cysteine (NAC). Following thaw, the neutral buoyancy media, Happy Cell, was used to maintain tumour-spheroids as discrete tissues during drug testing. Fresh and cryopreserved C4-2B or MCF-7 tumour-spheroids responded similarly to titrations of Docetaxel. This protocol will contribute to a future where tumour-spheroids will be available for purchase as reliable and reproducible products, allowing laboratories to efficiently replicate and build on published research, in many cases making tumour-spheroids simply another cell culture reagent.