cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xj8mpsdt6k
title: Raw data from: Effectiveness of the production of tissue-engineered living bone graft – a comparative study using perfusion and rotating bioreactor systems

description: The primary goal of the research was to compare the effectiveness of 2 bioreactors: (1) perfusion (Lazar Arrow-MTM Micro Bioreactor System) and rotating (Rotary Cell Culture System) in the generation of a living bone construct to select the system that is more favorable for cell cultivation and their differentiation towards mature bone cells. For this purpose bone marrow-derived mesenchymal stem cells (BMDSCs) were seeded on the surfaces of hydroxyapatite-based scaffolds and cultured in three different conditions: (1) static 3D culture – a test control (mat_S), (2) 3D culture in a perfusion bioreactor (mat_P), and (3) dynamic 3D culture in a rotating bioreactor (mat_R). Cell growth on the scaffolds was assessed quantitatively by LDH total assay and qualitatively by live/dead staining, cytoskeleton staining, and SEM imaging. Osteogenic differentiation was compared by ELISAs and immunofluorescent staining, whereas ECM mineralization was determined using Raman spectroscopy. 

Folders: ‘cytoskeleton_staining 1d’ and ‘cytoskeleton_staining 21d’ contain raw CLSM images after cytoskeleton staining after 1 day (before placing the samples into the bioreactors) and 21 days of culture, respectively. 

Folder ‘live dead” contains raw CLSM images of the cells on the scaffold after live/dead staining (before placing the samples into the bioreactors).

Folder ‘IF osteonectin_collagen” contains CLSM images after immunofluorescent staining of osteogenic markers.

Folder ‘SEM’ contains raw SEM images after 21 days of culture.

The name of the CLSM or SEM images indicates the specific sample and culture conditions, i.e. mat_S means static 3D culture, (2) mat_P means 3D culture in a perfusion bioreactor, and (3) mat_R means dynamic 3D culture in a rotating bioreactor.

Folder ‘Raman_maps’ contains various Microsoft Excel (.csv) files. Each Microsoft Excel file contains the raw data for Raman mapping.

Folder ‘Raman_spectra’ contains various Microsoft Excel (.csv) files. Each Microsoft Excel file contains the raw data for Raman spectra.

For Raman data, file name indicates the type of the sample, i.e. mat_S, mat_P, mat_R, mat_control that means non-seeded biomaterial incubated in the culture medium, and native that means untreated biomaterial.

Folder ‘ELISA_osteogenic markers’ contains various Microsoft Excel (.xlsx) files. Each Microsoft Excel file contains the raw results of ELISA for osteogenic marker (file name indicates the type of osteogenic marker). ELISA results are shown as concentration of specific osteogenic marker. Column B shows the name of the sample (mat_S, mat_P or mat_R).

The Microsoft Excel (.xlsx) file named ‘LDH_proliferation’ contains the raw results of LDH total proliferation assay performed after 1 day of culture (before placing the samples into the bioreactors) and after 21 days of culture in specific conditions.
DOI: 10.6084/m9.figshare.20374587.v1
title: 16-Sector Philippine Input-Output Tables.xlsx

description: This dataset contains re-specified input-output tables from the input-output accounts of the Philippines for the years 2000, 2006, 2012 and 2018. <br> The 2000 and 2006 tables were published by the then National Statistical Coordination Board in 240-sector resolution. <br> The 2012 table was published by the Philippine Statistics Authority in 65-sector resolution. <br> The 2018 table was published by the Philippine Statistics Authority in the 16-sector resolution which was the basis of the re-specification of the 2000, 2006 and 2012 tables.
DOI: 10.17632/r8bxnpyhkj
title: Underlying data. Overcoming challenges in implementing condition monitoring services: expert elicitation

description: This folder contains the underlying data accompanying the research paper titled “Overcoming Challenges in Implementing Condition Monitoring Services: Expert Elicitation,” developed within the DIMAND project and funded by the EU’s Horizon 2020 program. It includes anonymized interview transcripts from experts who participated in the elicitation process. The research aims to capture expert insights to analyze the factors limiting the market success of Condition Monitoring Services and to propose practical strategies to overcome these challenges.
DOI: 10.17632/56xm2x9bm3
title: Survey data for analysis on home energy management systems
DOI: 10.6084/m9.figshare.28551017.v1
title: GIS Programming course: Quiz and home assignment self assessments

description: This repository contains two Microsoft Excel documents:A quiz with eight questions, assigned to students in a graduate-level GIS programming course as part of Homework Assignment 2. The quiz assesses students' understanding of basic Python programming principles (such as loops and conditional statements).An Excel document with three worksheets, each corresponding to one homework assignment from the same graduate GIS programming course. The document includes self-reported background information (e.g., students' prior programming experience), details about the use of various resources (e.g., websites) for completing assignments, the perceived helpfulness of these resources, and scores for the homework assignments and quizzes.<br>
DOI: 10.6084/m9.figshare.6352496.v1
title: Evaluation

description: SpecINT: A framework for data integration over cheminformatics and bioinformatics RDF repositories.Authors: Branko Arsić, Marija Đokić-Petrović, Petar Spalević, Ivan Milentijević, Dejan Rančić & Marko Živanović<br>A comparison of the SpecINT framework with the Open PHACTS project which is now used in pharmaceutical companies. For each substance, each folder contains the number of extracted targets, cell-lines and IC50 values for every data source, as well as repository affiliation. <br>
DOI: 10.6084/m9.figshare.7441457.v1
title: GoogleNews-vectors-negative300.bin

description: A very important document for code of word embedding
DOI: 10.6084/m9.figshare.8052953.v4
title: Subject Raw Data

description: Raw data from subjects in the passive group (001-012) and active group (013-024) in a concurrent TMS-EEG study investigating natural frequencies.
DOI: 10.17632/8bfzmszngx
title: Data and code for paper The Role of Labour Market Frictions in the Czech economy: DSGE Approach

description: This file describes data and codes used in paper "The Role of Labour Market Frictions in the Czech economy: DSGE Approach"
DOI: 10.17632/gdw8pr456d
title: Lin_Kleemann_etal_UncroppedImages

description: Lin, Kleemann et al - Uncropped and uncompressed images of used gels for resubmission
DOI: 10.6084/m9.figshare.19086500.v1
title: 16S rRNA sequences from greenhouse aphid samples and README file.zip

description: A zipped folder containing all cleaned-up 16S rRNA sequences from greenhouse aphid samples and README file.
DOI: 10.6084/m9.figshare.5035604.v1
title: PowerPoint Slides for: A Comparison between Intermittent Peritoneal Dialysis and Automatic Peritoneal Dialysis on Urgent Peritoneal Dialysis

description: <i>Background:</i> Urgent-start dialysis is a major problem for incident dialysis population. Urgent start on hemodialysis is associated with an increased risk of infectious or mechanical complications, and its mortality is equal to or higher than that of urgent start on peritoneal dialysis (PD). However, compared to patients starting PD in a planned setting, those on urgent-started PD have an increased risk of mechanical complications and lower technique survival. <i>Methods:</i> In this study, 101 adult incident dialysis patients (≥18 years old) who underwent Tenckhoff catheter implantation were enrolled. All of the patients were grouped according to the urgent PD mode: the intermittent PD (IPD) or automatic PD (APD) group, and patients were followed for 1 year. The paired or independent <i>t</i> test was used to analyze the change of laboratory variables. Pearson chi-square test was applied to compare the short outcome between the 2 groups. <i>Results:</i> When PD was treated for 7 days and 1 month, the APD group has the lower serum potassium and phosphorus levels than the IPD group. The incidence of catheter dysfunction was significantly lower in the APD group. The morbidity of infection associated with PD in the first year was lower in the APD group despite no significant difference existing. The technique survival and patient survival rate have no evident difference between the 2 groups. <i>Conclusion:</i> Compared to IPD, urgent start on APD could reduce the risk of mechanical complication, which could be considered a gentle, safe, and feasible alternative to urgent start on IPD.
DOI: 10.17632/64ht845bg7
title: প্রেম-পটুয়া’র বজ্রনির্ঘোষ: প্রতুল মুখোপাধ্যায়ের গান

description: সারসংক্ষেপ: 
প্রতুল মুখোপাধ্যায়ের সংগীত ও তার প্রভাব নিয়ে লেখা এই প্রবন্ধটি তাঁর জীবন, সৃষ্টিশীলতা, ও সংগীত ভাবনার ওপর আলোকপাত করেছে। ষাট ও সত্তরের দশকে বেড়ে ওঠা এক প্রজন্ম কীভাবে তার গান ও গণসঙ্গীতের প্রতি আকৃষ্ট হয়েছিল, তা লেখক স্মৃতিচারণার মাধ্যমে তুলে ধরেছেন।
প্রতুল মুখোপাধ্যায় প্রচলিত ধারার বাইরে গিয়ে গানের মধ্যে সামাজিক ও রাজনৈতিক বার্তা সংযোজন করেছিলেন। তাঁর গান শুধু সংগীতের স্বরূপে আবদ্ধ ছিল না, বরং গণসংগ্রামের হাতিয়ার হয়ে উঠেছিল। হারমোনিয়াম কিংবা বাদ্যযন্ত্র ছাড়াই শুধু তুড়ির সুরে তিনি এক নতুন ধারা সৃষ্টি করেন, যা সাধারণ মানুষের সঙ্গে গভীরভাবে সংযুক্ত ছিল।
প্রবন্ধে তাঁর বিভিন্ন জনপ্রিয় ও আন্দোলনকেন্দ্রিক গানের কথা উল্লেখ করা হয়েছে, যেমন—“আমি বাংলায় গান গাই”, “ডিঙা ভাসাও সাগরে”, “আলু বেচো ছোলা বেচো”, যা সমাজচেতনার জাগরণ ঘটিয়েছে। তিনি শুধু নিজস্ব গান রচনা করেননি, বরং বিদ্রোহী ও জীবনমুখী কবিতা ও লোকসংগীতকে সুরারোপ করে এক নতুন মাত্রা দিয়েছেন।
প্রবন্ধটি তাঁর সংগীত জীবনের বিভিন্ন পর্যায়, তাঁর প্রকাশিত অ্যালবাম ও সাহিত্যকর্মের উল্লেখসহ তাঁর শিল্পীসত্তার মূল্যায়ন করেছে। তবে লেখক তাঁর রাজনৈতিক অবস্থান ও পরবর্তী জীবনের নীরবতা নিয়েও প্রশ্ন তুলেছেন।
সর্বশেষে, প্রতুল মুখোপাধ্যায়কে বাংলা সংগীতের এক অনন্য পথিকৃত হিসেবে স্বীকৃতি দেওয়া হয়েছে, যাঁর গান সমাজের বিপ্লবী চেতনার প্রতিফলন এবং বাঙালির আত্মপরিচয়ের এক অবিচ্ছেদ্য অংশ হয়ে থাকবে।
সূচক শব্দ: গণসংগীত, জীবনমুখী, প্রতিবাদ, সমাজচেতনা, পথের গান।
ভূমিকা:
প্রতুল মুখোপাধ্যায়ের সংগীত জীবন এবং তাঁর সৃষ্টিশীলতার বিশ্লেষণ নিয়ে এই প্রবন্ধটি রচিত হয়েছে। বাংলা গণসংগীতের এক উজ্জ্বল নক্ষত্র হিসেবে তিনি যে পথচলা শুরু করেছিলেন, তা সময়ের পরিক্রমায় কেবল সংগীতের মধ্যেই সীমাবদ্ধ থাকেনি, বরং সমাজ, রাজনীতি ও সংস্কৃতির গভীর বাস্তবতাকে প্রতিফলিত করেছে। প্রবন্ধটি তাঁর সংগীতের অন্তর্নিহিত তাৎপর্য, লিরিকের শক্তি, সুরের বৈচিত্র্য এবং রাজনৈতিক ও সাংস্কৃতিক প্রেক্ষাপটে তাঁর অবদানের ওপর আলোকপাত করেছে। একইসঙ্গে তাঁর গান কীভাবে সময়ের সঙ্গে বিবর্তিত হয়েছে এবং আজও প্রাসঙ্গিক রয়েছে, তা নিয়েও গভীর বিশ্লেষণ করা হয়েছে।
DOI: 10.6084/m9.figshare.3563874.v1
title: Supplement 1. Raw stable isotope values in bat fur.

description: File List Raw_stable_isotope_in_bat_fur.txt (MD5: 8139421e6c0c1f7a76831e45796158c8) Description Raw stable isotope values (Δ<sup>13</sup>C, Δ<sup>15</sup>N, and Δ<sup>2</sup>H) in bat fur collected from fatalities found at a wind farm in south-western Alberta, Canada.
DOI: 10.6084/m9.figshare.5802597.v1
title: TIMIT.zip

description: Speech Segregation Data set
DOI: 10.6084/m9.figshare.855612.v1
title: Mapping file for fna file

description: This is the mapping file that goes along with the fna file from 454-pyrosequencing
DOI: 10.17632/sj5362f4n7
title: ILTS-D2

description: Details for analysis are described in the document: Read me
DOI: 10.6084/m9.figshare.1572989.v1
title: data_S1

description: The data of all indicators in 7 years
DOI: 10.6084/m9.figshare.20677115.v1
title: A computational modeling method for root canal endoscopy using a specific CBCT filter: A new era in the metaverse of endodontics begins

description: Abstract A contemporary technological revolution has started a new era in the metaverse of Endodontics, a world of virtual operational possibilities that use an exact replica of the natural structures of the maxillofacial complex. This study describes a modeling method for root canal endoscopy using modern cone-beam CT (CBCT) software in a series of clinical cases. The method consists in acquiring thin CBCT slices (0.10mm) in the coronal, sagittal, and axial planes. A specific 3D volume filter, the pulp cavity filter of the e-Vol DX CBCT software, was used to navigate anatomical root canal microstructures, and to scan them using root canal endoscopy. The pulp cavity filter should be set to synchronize CBCT scans from 2D mode - multiplanar reformations (MPR) - to 3D mode - volumetric reconstruction. This filter, when adopting the option of volumetric reconstruction, the developed algorithm leaves the dentin density in transparent mode so that the pulp cavity may be visualized. The algorithm applied performs the suppression (visual) of areas with dentin density. This ensures 3D visualization of the slices and the microanatomy of the root canal, as well as a dynamic navigation throughout the pulp cavity. This computational modeling method adds new resources to Endodontics, which may impact the predictability of root canal treatments positively. The virtual visualization of the internal anatomy of an exact replica of the canal ensures better communications, reliability, and clinical operationalization. Root canal endoscopy using this novel CBCT filter may be used for clinical applications together with innovative digital and virtual-reality resources that will be naturally incorporated into the principles of Endodontics.
DOI: 10.6084/m9.figshare.26764015.v1
title: Source Data

description: Phototransistor design and fabrication
DOI: 10.6084/m9.figshare.28050857.v1
title: Supplementary Material for: Scutellariae Radix Ameliorates Prenatal Stress Induced Anxiety-like and Depression-like Behavior in the Offspring via Reversing HPA Axis Hyperfunction and Ameliorating Neurodevelopmental Dysfunction

description: Introduction: This study aimed to explore the impact and mechanism of Scutellariae radix (SR), dried root of Scutellaria baicalensis Georgi of Labiatae, on prenatal stress (PS) induced anxiety-like and depression-like behavior in the offspring in a mouse prenatal stress model.
Methods: The open field test (OFT), tail suspension test (TST), and forced swimming test (FST) were utilized to assess the behavior of the offspring. Histological changes were evaluated using HE staining and Nissl staining. ELISA was employed to detect the levels of related factors in the serum and fetal brains of offspring mice. Immunohistochemistry was used to determine the expressions of doublecortin and neurotrophic factors in the hippocampus, and RT-PCR reflected the expression of factors in the hippocampus and placenta of offspring mice. These various techniques collectively provided insight into the neurodevelopmental status by detecting indicators related to neurodevelopmental status. LC-MS/MS and molecular docking were used to clarify the chemical constituents and the pharmacodynamic components in Scutellariae radix.
Results: Scutellariae radix ameliorated prenatal stress-induced anxiety-like and depression-like behavior in the offspring. It also alleviated hippocampal neurogenesis impairment caused by prenatal stress and restored abnormal expression of hippocampal glutamate (Glu) and brain-derived neurotrophic factor in the offspring. Additionally, Scutellariae radix maintained normal 11β-HSD1 expression in the placenta of prenatal stress mice, ensuring a normal level of glucocorticoid (GC) and glucocorticoid receptors (GR) in the fetus. Furthermore, Scutellariae radix increased the mRNA expression of GR and 11β-HSD2 while decreasing the mRNA expression of 11β-HSD1, thereby normalizing levels of serum CRH, ACTH, and GC in the offspring. Finally, docking results indicated that baicalein, wogonin, wogonoside, and baicalin exhibited stronger binding ability with the target.
Conclusion: The results of our study indicate that Scutellariae radix may have the potential to alleviate prenatal stress-induced anxiety-like and depression-like behaviors in offspring, at least partially through protecting placental barrier function, reversing HPA axis hyperfunction, and ameliorating neurodevelopmental dysfunction.
DOI: 10.6084/m9.figshare.3425753.v1
title: The relevance of dawsonite precipitation in CO2 sequestration in the Mihalyi-Repcelak area, NW Hungary

description: Raman spectra of dawsonite, table
DOI: 10.17632/hr8v64myns
title: From employee to entrepreneur: the role of unemployment risk

description: The files explain the main data and the code that can be used for the replication of the paper: “From employee to entrepreneur: The role of unemployment risk” by Ai Jun Hou, Sara Jonsson, Xiaoyang Li, and Qinglin Ouyang.
DOI: 10.17632/k497wp2x67
title: Rhine_NatNeuro_2024

description: Aging is one of the most prominent risk factors for neurodegeneration, yet the molecular mechanisms underlying the deterioration of old neurons are mostly unknown. To efficiently study neurodegeneration in the context of aging, we transdifferentiated primary human fibroblasts from aged healthy donors directly into neurons, which retained their aging markers. Here we show that aged neurons are broadly depleted of RNA-binding proteins, especially spliceosome components. Intriguingly, splicing proteins – like the dementia and ALS-associated protein TDP-43 – mislocalize to the cytoplasm in aged neurons, which leads to widespread alternative splicing. Cytoplasmic spliceosome components typically are recruited to stress granules, but aged neurons suffer from chronic stress that prevents this sequestration. We link chronic stress to the malfunctioning ubiquitylation machinery, poor HSP90α chaperone activity, and the failure to respond to new stress events. Together our data demonstrates that aging-linked deterioration of RNA biology is a key driver of poor resiliency in aged neurons.
DOI: 10.6084/m9.figshare.14049875.v1
title: Accompanying Data for Ecology Letters Report "Mutualism disruption by an invasive ant reduces carbon fixation for a foundational East African ant-plant"

description: Resultant data from a before-after-control-impact study in which <i>Acacia drepanolobium </i>ant-trees were invaded by a non-native ant species, <i>Pheidole megacephala</i>, inducing changes in leaf-level gas exchange 5-7 months after the displacement of native acacia-ants. Control trees were monitored during the same time period to control for background variation to to environmental conditions.<br>Resultant data from an accompanying comparative-factorial field study in which the effects of herbivore exclusion and ant removal on leaf and canopy gas exchange and leaf water potential were recorded in both long-term invaded and un-invaded <i>Acacia drepanolobium</i> tree stands.
DOI: 10.17632/5txxwj2g6b
title: Data for: Permutation Flow Shop Scheduling with Multiple Lines and Demand Plans Using Reinforcement Learning

description: Description of dataset This repository contains the datasets used in our study "Permutation Flow Shop Scheduling with Multiple Lines and Demand Plans Using Reinforcement Learning". The repository provides three datasets. The main dataset in the folder data contains 1050 problem instances for the multi-line permutation flow shop problem. The dataset extends the dataset introduced by Taillard (1993) to multiple production lines and demand plans. The processing times were sampled from the uniform interval [1,99]. In addition, we sampled the demand plans from a multinomial distribution with equal probability for each job type, which leads to rather balanced demand plans. The folders data_lin and data_exp each contain 150 problem instances with more imbalanced demand plans, where the probabilities of each job type decrease linearly or exponentially. However, the quantity to be produced for each job type is greater than zero. Dataset structure Each dataset of the main study is structured in 15 subfolders. Each folder contains problem instances for a combination of layout and processing time variation. Folder name notation: Tai_PFSP_L_<b> A: Number of production lines (1-3) B: Processing time variation (1-5) All of these folders contain 70 problem instances. A problem file is a combination of the problem layout (sequence length, number of machines and stations) and the demand plan variation. The processing times are fixed for one problem characteristic, but the ten demand plans are different. File name notation: t____.mix C: Number of production lines (1-3) D: Identifier of the layout (1-7) E: Sequence length (20,100,500) F: Number of machines per line (5,10,20) G: Number of job types (5,10,20) H: Number of demand plan variation (1-10) Each file represents a different problem in text format with the following notation: Line 1: Demand plan Line 2: Layout Type Line 3: Number of machines Line 4: Number of machines per line Line 5: Number of total machines with synchronization machine Line 6: Number of job types Line 7-end: Processing times in matrix form for machines (rows) and job types (columns)</b>
DOI: 10.6084/m9.figshare.24198819.v1
title: Genome annotation of Function annotation ressult of Acrossocheilus fasciatus genome genes.

description: Function annotation ressult of Acrossocheilus fasciatus genome genes.<br>
DOI: 10.17632/hgjrc8yr82
title: Weight Loss Data for Morbidly Obese Patients With Heart Failure Following Siddha Fasting

description: Data illustrating weight loss (kg) and characteristics of 10 morbidly obese patients with heart failure who participated in Siddha Fasting. Data was gathered by clinic staff during routine follow up appointments. All participants achieved at least 10% weight loss. 

Siddha recommends fasting to reduce cardiac work load. Emotional and habitual eating is minimized and people learn to recognize hunger as a physiological and welcome sign of health. This practice intuitively deepens the mind-body understanding and transforms the relationship with eating.
DOI: 10.17632/j765s2h6k2
title: Goethite adsorption and modeling of Pb(II), Zn(II), and phosphate

description: The data include experimental pH adsorption edges of Pb(II) and Zn(II) and adsorption isotherms of phosphate on goethites of differents specific surface areas, and their modeling using the extended CD-MUSIC surface complexation model.
DOI: 10.17632/szngy2gdvj
title: A Supervised Exercise Programme versus Regular care in Reducing Upper Limb Disability and to Improve Lung Capacity in Breast Cancer Patients

description: This is a RCT compares the supervised exercise programme vs regular care in breast cancer patients undergoing radiotherapy
DOI: 10.17632/vrphcb46zx
title: (Dataset) Perceptions of inclusive education

description: This data set examines the perceptions of individuals about inclusive education. The information collected includes opinions on the viability of inclusive education at various educational stages and the weighing of associated advantages and disadvantages. Focusing on perception differences between men and women, the data set provides a detailed look at how diverse groups perceive inclusivity in education. The results offer valuable insight into attitudes towards inclusive education and may be useful to inform more equitable educational policies and practices.
DOI: 10.6084/m9.figshare.14813157.v2
title: Conformational analysis of aspirin dataset

description: These datasets contain the mean energy of different conformers of aspirin corresponding to the rotation of carboxylic acid and ester groups. The clusters C1 and C2 are selected based on the distribution of dihedral angles using the mean +/- standard deviation as a criteria. The energy difference between clusters C1 and C2 is calculated from the distribution of the test set (20000 points) as well as from the distribution of model predictions.