cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7497845
title: Supplementary Material for: Understanding and Improving Diagnostic Tests: The Clinician Perspective

description: Recent advances in molecular and mass screening technologies have paved the way for discovery of novel diagnostic tests and/or biomarkers for accurate identification of specific diseases and organ injuries. However, new diagnostic tests/biomarkers should be subjected to thorough evaluation before introduction into routine clinical practice. This review focuses on the up-to-date methodology in designing and evaluating diagnostic tests/biomarkers, and assessing their clinical utilities for improving health care efficiency, cost-effectiveness and outcomes. In addition to improved diagnostic utilities, future diagnostic tests should be developed in collaboration with our industrial partners and be applicable at the bedside for disease surveillance.
DOI: 10.6084/m9.figshare.7497845.v1
title: Supplementary Material for: Understanding and Improving Diagnostic Tests: The Clinician Perspective

description: Recent advances in molecular and mass screening technologies have paved the way for discovery of novel diagnostic tests and/or biomarkers for accurate identification of specific diseases and organ injuries. However, new diagnostic tests/biomarkers should be subjected to thorough evaluation before introduction into routine clinical practice. This review focuses on the up-to-date methodology in designing and evaluating diagnostic tests/biomarkers, and assessing their clinical utilities for improving health care efficiency, cost-effectiveness and outcomes. In addition to improved diagnostic utilities, future diagnostic tests should be developed in collaboration with our industrial partners and be applicable at the bedside for disease surveillance.
DOI: 10.7284/115087
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KN221-01 using a Hawaii UHDAS instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115090
title: Expendable Probe data collected during research cruise KN221-01 using a Sippican MK21 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115094
title: Fluorometer data collected during research cruise KN221-01 using a WET Labs WETStar instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115093
title: GNSS (Global Navigation Satellite System) data collected during research cruise KN221-01 using a C&C C-Nav 2000 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115088
title: Meteorological Station data collected during research cruise KN221-01 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497743
title: Additional file 7: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S2. Likelihood ratio test for dominance of fertilization types in nodes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7497740
title: Additional file 6: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S4. Results from phylogenetic generalized least squares (PGLS) analyses of semen diffusion and Glycosylation of SPP120. (XLSX 8 kb)
DOI: 10.7284/115096
title: Meteorological Station data collected during research cruise KN221-01 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497740.v1
title: Additional file 6: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S4. Results from phylogenetic generalized least squares (PGLS) analyses of semen diffusion and Glycosylation of SPP120. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7497743.v1
title: Additional file 7: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S2. Likelihood ratio test for dominance of fertilization types in nodes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7497734
title: Additional file 2: of NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors

description: Table S1. Details of the 33 datasets downloaded from SRA. The “Number of Sequencing Runs” gives the number of individual SRA “run” datasets that appeared to have been derived from the same sequencing run and thus were concatenated. Multiple datasets from the same SRA study that were not combined were given separate designations (“_0”, “_1”, etc.). The “Instrument” column is based on the metadata given in each SRA dataset and may not be accurate. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7497734.v1
title: Additional file 2: of NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors

description: Table S1. Details of the 33 datasets downloaded from SRA. The “Number of Sequencing Runs” gives the number of individual SRA “run” datasets that appeared to have been derived from the same sequencing run and thus were concatenated. Multiple datasets from the same SRA study that were not combined were given separate designations (“_0”, “_1”, etc.). The “Instrument” column is based on the metadata given in each SRA dataset and may not be accurate. (XLSX 13 kb)
DOI: 10.7284/115092
title: Multibeam Echosounder data collected during research cruise KN221-01 using a SeaBeam 3012-P1 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115097
title: Radiometer data collected during research cruise KN221-01 using a Eppley PIR instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115098
title: Radiometer data collected during research cruise KN221-01 using a Eppley PSP instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115091
title: Singlebeam Echosounder data collected during research cruise KN221-01 using a Knudsen 320B/R instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115099
title: Water Temperature data collected during research cruise KN221-01 using a Sea-Bird SBE-48 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497689
title: Additional file 24: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S6. Number of species, copy number of SPP120, copy number of pseudo-genes, and ratio of pseudo-genes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7497689.v1
title: Additional file 24: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S6. Number of species, copy number of SPP120, copy number of pseudo-genes, and ratio of pseudo-genes. (XLSX 9 kb)
DOI: 10.7284/115095
title: TSG (Thermosalinograph) data collected during research cruise KN221-01 using a Sea-Bird SBE-45 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497677
title: Additional file 22: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S5. Results from phylogenetic generalized least squares (PGLS) analyses of sperm immobilization and N-terminal region of fertilization types. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7497677.v1
title: Additional file 22: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S5. Results from phylogenetic generalized least squares (PGLS) analyses of sperm immobilization and N-terminal region of fertilization types. (XLSX 10 kb)
DOI: 10.7284/115149
title: Multiplexed data collected during research cruise KN221-02 using a WHOI Calliope instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115100
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KN221-02 using a Hawaii UHDAS instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115147
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KN221-02 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115153
title: Fluorometer data collected during research cruise KN221-02 using a WET Labs WETStar instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115152
title: GNSS (Global Navigation Satellite System) data collected during research cruise KN221-02 using a C&C C-Nav 2000 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115148
title: Meteorological Station data collected during research cruise KN221-02 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497623
title: Additional file 12: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S1. Species, fertilization places and manners, contribution of SPP120 on fertilization, brooding type, Tribe, Mating system, and collection sites. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7497623.v1
title: Additional file 12: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S1. Species, fertilization places and manners, contribution of SPP120 on fertilization, brooding type, Tribe, Mating system, and collection sites. (XLSX 18 kb)
DOI: 10.7284/115155
title: Meteorological Station data collected during research cruise KN221-02 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115151
title: Multibeam Echosounder data collected during research cruise KN221-02 using a SeaBeam 3012-P1 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497608
title: Additional file 10: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S3. Results from phylogenetic generalized least squares (PGLS) analyses of semen diffusion and fertilization types. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7497608.v1
title: Additional file 10: of Variations in the breeding behavior of cichlids and the evolution of the multi-functional seminal plasma protein, seminal plasma glycoprotein 120

description: Table S3. Results from phylogenetic generalized least squares (PGLS) analyses of semen diffusion and fertilization types. (XLSX 8 kb)
DOI: 10.7284/115156
title: Radiometer data collected during research cruise KN221-02 using a Eppley PIR instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115157
title: Radiometer data collected during research cruise KN221-02 using a Eppley PSP instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115150
title: Singlebeam Echosounder data collected during research cruise KN221-02 using a Knudsen 320B/R instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115158
title: Water Temperature data collected during research cruise KN221-02 using a Sea-Bird SBE-48 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497575
title: MOESM4 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 4: Table S4. Pathway analysis of genes co-expressed with the prognostic PCGs or lncRNA in the signature by SubpathwayMiner.
DOI: 10.6084/m9.figshare.7497566
title: Additional file 1: of Geographic origin and migration phenology of European red admirals (Vanessa atalanta) as revealed by stable isotopes

description: Raw data on date of capture, sex, presence of eggs, fat class and deuterium for red admirals captured at different study sites. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.7497575.v1
title: MOESM4 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 4: Table S4. Pathway analysis of genes co-expressed with the prognostic PCGs or lncRNA in the signature by SubpathwayMiner.
DOI: 10.7284/115154
title: TSG (Thermosalinograph) data collected during research cruise KN221-02 using a Sea-Bird SBE-45 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497566.v1
title: Additional file 1: of Geographic origin and migration phenology of European red admirals (Vanessa atalanta) as revealed by stable isotopes

description: Raw data on date of capture, sex, presence of eggs, fat class and deuterium for red admirals captured at different study sites. (XLSX 19 kb)
DOI: 10.7284/115161
title: Multiplexed data collected during research cruise KN221-03 using a WHOI Calliope instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497560
title: MOESM3 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 3: Table S3. 2328 genes co-expressed with the 11 molecular markers in the PCG-lncRNA signature (Pearson correlation coefficient &gt; 0.4, P &lt; 0.05, Entire group, n = 153).
DOI: 10.6084/m9.figshare.7497557
title: MOESM2 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 2: Table S2. The 4095 signatures composed of different PCGs and lncRNAs in the training and test dataset.
DOI: 10.6084/m9.figshare.7497560.v1
title: MOESM3 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 3: Table S3. 2328 genes co-expressed with the 11 molecular markers in the PCG-lncRNA signature (Pearson correlation coefficient &gt; 0.4, P &lt; 0.05, Entire group, n = 153).
DOI: 10.6084/m9.figshare.7497557.v1
title: MOESM2 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 2: Table S2. The 4095 signatures composed of different PCGs and lncRNAs in the training and test dataset.
DOI: 10.7284/115101
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise KN221-03 using a Hawaii UHDAS instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497551
title: MOESM1 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 1: Table S1. PCGs and lncRNAs of Univariate Cox regression analysis (P &lt; 0.05) in the training set (n = 76).
DOI: 10.6084/m9.figshare.7497551.v1
title: MOESM1 of Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients

description: Additional file 1: Table S1. PCGs and lncRNAs of Univariate Cox regression analysis (P &lt; 0.05) in the training set (n = 76).
DOI: 10.7284/115159
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise KN221-03 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115162
title: Expendable Probe data collected during research cruise KN221-03 using a Sippican MK21 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497530
title: Additional file 4: of Deworming in non-pregnant adolescent girls and adult women: a systematic review and meta-analysis

description: Data extraction form.Â (XLSX 20 kb)
DOI: 10.7284/115166
title: Fluorometer data collected during research cruise KN221-03 using a WET Labs WETStar instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497530.v1
title: Additional file 4: of Deworming in non-pregnant adolescent girls and adult women: a systematic review and meta-analysis

description: Data extraction form.Â (XLSX 20 kb)
DOI: 10.7284/115165
title: GNSS (Global Navigation Satellite System) data collected during research cruise KN221-03 using a C&C C-Nav 2000 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115160
title: Meteorological Station data collected during research cruise KN221-03 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7497509
title: Additional file 6 of The “Clinician’s illusion” and the epidemiology, diagnosis and treatment of depressive disorders

description: The NetLogo model used to produce the animations presented in the manuscript. This file is in NetLogo format – parameters can be adjusted and new animations generated. (NLOGO 31 kb)
DOI: 10.6084/m9.figshare.7497509.v1
title: Additional file 6 of The “Clinician’s illusion” and the epidemiology, diagnosis and treatment of depressive disorders

description: The NetLogo model used to produce the animations presented in the manuscript. This file is in NetLogo format – parameters can be adjusted and new animations generated. (NLOGO 31 kb)
DOI: 10.7284/115168
title: Meteorological Station data collected during research cruise KN221-03 using a Vaisala WXT520 instrument system onboard the platform RV Knorr

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/dl.utfmqx
title: Occurrence Download

description: A dataset containing 1324 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Epicauta pensylvanica (DeGeer, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1324 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081999-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h97mjs
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Sea slugs (Gastropoda: Heterobranchia) associated to Autonomous Reef Monitoring Structures (ARMS) in southern Gulf of Mexico and Mexican Caribbean Sea"
 ]
}

 The dataset includes 83 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082001-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzm782
title: Occurrence Download

description: A dataset containing 3907 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry MULTIPOLYGON(((-126.77208 43.95321,-127.88625 40.52009,-121.64405 31.02127,-113.96214 30.24061,-111.02302 33.36672,-118.26535 43.91867,-126.77208 43.95321)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Riodinidae"
 ]
}

 The dataset includes 3907 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082000-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sebsf8
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Shargacucullia prenanthis Boisduval, 1840",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 76 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082002-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pae22u
title: Occurrence Download

description: A dataset containing 1324 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Epicauta pensylvanica (DeGeer, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1324 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082003-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.