cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.821587.2
title: Water column radiotracer methane oxidation rates in the Guaymas Basin, Gulf of California from R/V Atlantis cruise AT42-05 in 2018 and R/V Falkor cruise FK190211 in 2019

description: false
DOI: 10.26008/1912/bco-dmo.890887.1
title: Prochlorococcus or Synechococcus cell concentrations and nitrite concentrations during batch culture with ammonium or nitrate as the sole nitrogen source for growth

description: These data include picocyanobacteria (Prochlorococcus or Synechococcus) cell concentrations and nitrite (NO2-) concentrations during batch culture with ammonium (NH4+) or nitrate (NO3-) as the sole nitrogen source for growth. The study was focused on assessing the potential for picocyanobacteria to release nitrite during growth on nitrate due to incomplete assimilatory nitrate reduction. Both pure cultures and co-cultures were assessed.
DOI: 10.26008/1912/bco-dmo.684581.1
title: Calcification rates of Acropora pulchra under two pCO2 levels and two temperatures sampled during experiments at Richard B Gump Research Station, Moorea, French Polynesia in July of 2015

description: This dataset includes calcification rates of the coral Acropora pulchra during an experiment that took place July of 2015 conducted at the Richard B Gump Research Station, Moorea, French Polynesia.  Four treatments were used to test calcification rates at approximated ambient and elevated CO2 and temperature levels.
DOI: 10.26008/1912/bco-dmo.684605.1
title: Carbonate chemistry sampled during Acropora pulchra calcification experiments that took place in Moorea, French Polynesia from Jul to Nov of 2015

description: Carbonate chemistry was measured during two experiments that tested calcification rates of Acropora pulchra under approximated ambient and elevated temperature and pCO2 levels.  The experiments took place between July and December of 2015 at the Richard B Gump Research Station, Moorea, French Polynesia.
DOI: 10.26008/1912/bco-dmo.523731.1
title: Benthic invertebrate taxonomy, species and codes - St. John USVI survey 1988-2007 (St. John LTREB project)

description: false
DOI: 10.26008/1912/bco-dmo.684594.1
title: Calcification rates of Acropora pulchra in ambient and elevated temperature and pCO2 conditions sampled during experiments at Richard B Gump Research Station, Moorea, French Polynesia from Oct to Nov of 2015

description: This dataset includes calcification rates of the coral Acropora pulchra during two 21-day experimental treatments from October to November of 2015 conducted at the Richard B Gump Research Station, Moorea, French Polynesia.  The first 21-day treatment was conducted using approximated ambient conditions, and the second &quot;high&quot; treatment conditions had elevated temperature and pCO2 levels.
DOI: 10.26008/1912/bco-dmo.862068.1
title: Composition of marine invertebrate communities across latitude with exposure to predation (Competition and Predation across Latitude)

description: Composition of sessile marine invertebrates from coastal sites across a latitudinal gradient spanning the subarctic to the tropics. Invertebrate communities developed under low predation for three or 12 months within cages and then underwent exposure to predation or were re-caged as controls. This experiment provided an assessment of predation impact on mature communities to complement predator exclusion experiments that measured impact of predators on prey community assembly.
DOI: 10.26008/1912/bco-dmo.523747.1
title: Benthic invertebrates from Tektite site, USVI: 1988-2007 (St. John LTREB project)

description: Benthic invertebrates from Tektite site, USVI: 1988-2007.
DOI: 10.26008/1912/bco-dmo.525499.1
title: Benthic invertebrates from 6 sites pooled, USVI: 1992-2007 (St. John LTREB project)

description: Benthic invertebrates from 6 sites pooled, USVI: 1992-2007.
DOI: 10.26008/1912/bco-dmo.630404.1
title: Octocorals, scleractinia, macroalgae surveys describing species abundance and distribution on St. John and St. Thomas, USVI in 2011 (St. John LTREB project, VI Octocorals project)

description: Octocorals, scleractinia, macroalgae surveys describing species abundance and distribution on St. John and St. Thomas, USVI in 2011 (St. John LTREB project, VI Octocorals project)
DOI: 10.26008/1912/bco-dmo.639382.1
title: Moored time-series records for temperature collected from the LB1 Mooring, R/V Savannah (LB-2012-LB1, SAV-12-02) in the South Atlantic Bight (SAB) continental shelf off Long Bay during 2012 (Long Bay Wintertime Bloom project)

description: Moored time-series records of temperature measured every 5 minutes (300sec) by 25 Onset HOBO Water Temperature Data Loggers mounted on a tautline mooring. Collected from the LB1 Mooring, R/V Savannah (LB-2012-LB1, SAV-12-02) in the South Atlantic Bight continental shelf off Long Bay during 2012.
DOI: 10.26008/1912/bco-dmo.872434.1
title: Concentrations of dissolved cadmium, nickel, manganese, lanthanum, cerium, praseodymium, and neodymium from the Eastern Tropical North Pacific Ocean on R/V Revelle cruise RR1804-1805 (OMZ Nutrient Cycling project)

description: Oxygen deficient zones (ODZs) play an important role in the distribution and cycling of trace metals in the ocean, as important sources of metals including Fe and Mn to the ocean, and also as possible sinks of chalcophile elements such as Cd. The Eastern Tropical North Pacific (ETNP) ODZ is one of the three largest ODZs worldwide. Here we present results from two sectional surveys through the ETNP ODZ (23N-14N, 105W-130W) conducted during two cruises of the R/V Roger Revelle, RR1804 and RR1805, from March to April 2018, providing a high-resolution concentrations of dissolved Cd, Ni, Mn, La, Ce, Pr, and Nd in seawater.
DOI: 10.26008/1912/bco-dmo.2341.2
title: Cruise Event Logs from 15 vessels for 116 U.S. GLOBEC cruises from 1997-2004 in the Northeast Pacific and Gulf of Alaska areas (NEP program)

description: Cruise Event Logs from 15 vessels for 116 U.S. GLOBEC cruises from 1997-2004 in the Northeast Pacific and Gulf of Alaska areas
DOI: 10.26008/1912/bco-dmo.662996.1
title: Metadata associated with genomic and genetic data collected from organisms obtained on BOWLs landers, R/V Oceanus June 22-27, 2014 (BOWLS project)

description: Metadata associated with genomic and genetic data collected from organisms obtained on BOWLs landers, R/V Oceanus June 22-27, 2014.
DOI: 10.26008/1912/bco-dmo.887787.1
title: FlowCAM enumeration of phytoplankton classes from samples taken during R/V Endeavor cruise EN616 in July 2018

description: This dataset presents imaging cytometer data from water samples collected during R/V Endeavor cruise EN616. Niskin bottle samples were taken at nine stations and eight depths in the northwest Atlantic in July 2018. A Yokogawa FlowCAM imaging cytometer was used to enumerate the major microalgal classes, and the particle size distribution function was estimated.
DOI: 10.26008/1912/bco-dmo.887800.1
title: Hydrography and environmental conditions measured with CTD at nine stations during R/V Endeavor cruise EN616 in July 2018

description: Hydrography and environmental conditions were measured with CTD at nine stations during R/V Endeavor cruise EN616 in July 2018. The stations ranged from the New England Continental Shelf, New England Continental Slope, to the Sargasso Sea ocean regions.
DOI: 10.26008/1912/bco-dmo.887851.1
title: Ambient concentrations of acetate, glycerol, and mannitol measured from samples collected during R/V Endeavor cruise EN616 in the northwest Atlantic in July 2018

description: This data set provides ambient concentrations of three dissolved organic compound (acetate, glycerol and mannitol) measured from water samples taken during R/V Endeavor cruise EN616 in the northwest Atlantic in July 2018.  These concentrations were derived using new analytical methods described in the below-referenced Science Advances manuscript by Balch et al.
DOI: 10.26008/1912/bco-dmo.3867.1
title: Spectral absorption coefficients of phytoplankton along US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic in 2010 (U.S. GEOTRACES NAT project)

description: Spectral absorption coefficients of phytoplankton along US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic in 2010.
DOI: 10.26008/1912/bco-dmo.551609.1
title: Solar irradiance in Delaware Estuary from the R/V Hugh R. Sharp HRS111107DK, HRS120809DK, HRS121112DK, HRS1313, HRS1324 in 2011 - 2013 (PAPI: Photochemistry and Photoheterotroph Interactions project)

description: This data set is a compilation of solar irradiance data that were collected during the PAPI cruises 1 through 6 in the Delaware Estuary from Aug. 2009 to Nov. 2013.  Data were obtained to support photobiological and photochemical experiments. (PAPI: Photochemistry and Photoheterotroph Interactions project)
DOI: 10.26008/1912/bco-dmo.646842.1
title: Dissolved lead (Pb) along the US GEOTRACES East Pacific Zonal Transect from the R/V Thomas G. Thompson TN303 cruise in the Eastern Tropical Pacific, Peru to Tahiti during 2013

description: Dissolved lead (Pb) along the US GEOTRACES East Pacific Zonal Transect from the R/V Thomas G. Thompson TN303 cruise in the Eastern Tropical Pacific, Peru to Tahiti during 2013.
DOI: 10.26008/1912/bco-dmo.889972.1
title: Sponge volume from repeated surveys in St. Thomas, U.S. Virgin Islands, before and after the 2017 hurricane season

description: Prior to the 2017 hurricanes, six shallow (8-15 meter depth) reef sites had been selected from the Virgin Islands Territorial Coral Reef Monitoring Program’s (TCRMP) permanent monitoring sites to study variation in sponge communities - Black Point (BP), Coculus Rock (CR), and Magens Bay (MB), which are in embayments with heavily developed watersheds. Buck Island (BI) and Savana Island (SI) are located near undeveloped offshore cays. Botany Bay (BB) is a nearshore site in a bay with a low level of watershed development.

This dataset represents sponge volume from these repeated surveys before and after the 2017 hurricane season. We used three randomly selected transects out of the six permanently established 10-meter TCRMP transects at each site. The same three transects at each site were re-surveyed repeatedly in August 2016 (pre-hurricanes), December 2017 (10 weeks post-hurricanes), March 2018 (24 weeks post-hurricanes), November 2018 (61 weeks post-hurricanes), and July 2019 (93 weeks post-hurricanes).
DOI: 10.26008/1912/bco-dmo.890324.1
title: Raw cover of sponges from repeated surveys in St. Thomas, U.S. Virgin Islands, before and after the 2017 hurricane season

description: Prior to the 2017 hurricanes, six shallow (8-15 meter depth) reef sites had been selected from the Virgin Islands Territorial Coral Reef Monitoring Program’s (TCRMP) permanent monitoring sites to study variation in sponge communities- Black Point (BP), Coculus Rock (CR), and Magens Bay (MB), which are in embayments with heavily developed watersheds. Buck Island (BI) and Savana Island (SI) are located near undeveloped offshore cays. Botany Bay (BB) is a nearshore site in a bay with a low level of watershed development.

This dataset represents sponge cover from repeated surveys before and after the 2017 hurricane season. We used three randomly selected transects out of the six permanently established 10-meter TCRMP transects at each site. The same three transects at each site were re-surveyed repeatedly in August 2016 (pre-hurricanes), December 2017 (10 weeks post-hurricanes), March 2018 (24 weeks post-hurricanes), November 2018 (61 weeks post-hurricanes), and July 2019 (93 weeks post-hurricanes).
DOI: 10.26008/1912/bco-dmo.890333.1
title: Sponge Density, Morphology, and Assemblages from repeated surveys in St. Thomas, U.S. Virgin Islands, before and after the 2017 hurricane season

description: Prior to the 2017 hurricanes, six shallow (8-15 meter depth) reef sites had been selected from the Virgin Islands Territorial Coral Reef Monitoring Program’s (TCRMP) permanent monitoring sites to study variation in sponge communities- Black Point (BP), Coculus Rock (CR), and Magens Bay (MB), which are in embayments with heavily developed watersheds. Buck Island (BI) and Savana Island (SI) are located near undeveloped offshore cays. Botany Bay (BB) is a nearshore site in a bay with a low level of watershed development.

This dataset represents sponge density, morphology, and assemblages from these repeated surveys before and after the 2017 hurricane season. We used three randomly selected transects out of the six permanently established 10-meter TCRMP transects at each site. The same three transects at each site were re-surveyed repeatedly in August 2016 (pre-hurricanes), December 2017 (10 weeks post-hurricanes), March 2018 (24 weeks post-hurricanes), November 2018 (61 weeks post-hurricanes), and July 2019 (93 weeks post-hurricanes).
DOI: 10.26008/1912/bco-dmo.862415.2
title: Temperature loggers (HOBO) placed in two locations off the coast of the West coast of Leyte, the Philippines , 2012-2019.

description: Temperature loggers (HOBO) placed in two locations (HOBO1: 10.74373, 124.78668, HOBO2: 10.74364, 124.78665) off the coast of the West coast of Leyte, the Philippines , 2012-2019.
DOI: 10.26008/1912/bco-dmo.890979.1
title: Biogeochemistry, metabolomics, and metagenomics of Florida's Coral Reef from sampling conducted over 15 days in June 2019

description: This comparative 'omics dataset was collected over 15 days in June 2019 along Florida's Coral Reef. We assessed 85 reefs for the prevalence of stony coral tissue loss disease (SCTLD), nutrients (total organic carbon (TOC), total organic nitrogen (TON), inorganic nutrients), and abundances of microbial functional groups (Prochlorococcus, Synechococcus, picoeukaryotes, and heterotrophic microbes (unpigmented bacteria and archaea)), from reef depth waters. At 45 of the reefs, high-resolution photomosaics were used to examine the composition of benthic organisms. At 13 geographically dispersed reefs, we collected seawater (1.7 liters in biological triplicates) for both targeted and untargeted metabolomics analyses. Seawater (2 liters in duplicate) was collected at 26 sites, including the 13 examined for metabolomics, for taxonomic (bacteria and archaea 16S ribosomal RNA gene) and functional (shotgun metagenome) microbiome analyses, and chlorophyll. Given the stony coral tissue loss disease outbreak, we also targeted healthy and diseased coral tissue and near-coral seawater for taxonomic microbiome (16S rRNA gene) analysis (11 sites). 

Significance: Microorganisms and the dissolved metabolites they process are central to the functioning of ocean ecosystems. These 'invisible' ocean components are poorly understood in biodiverse and productive coral reef ecosystems, where they contribute to nutrient cycling and signaling cues between reef organisms. Microbes and dissolved metabolites offer a new means to examine reef features and have applications for conservation, monitoring, and restoration efforts in these changing ecosystems.
DOI: 10.26008/1912/bco-dmo.887863.1
title: Coccolithophore counts from polarized microscopy birefringence measurements of samples collected in the Northwest Atlantic during R/V Endeavor cruise EN616 in July 2018

description: This dataset presents polarized microscopy-derived concentration data for coccolithophores and detached coccoliths in samples collected from stations in the Northwest Atlantic during R/V Endeavor cruise EN616 in July 2018. Counts are based on image analysis of dark-field, cross-polarized views of filtered particulate matter. These counts take advantage of the birefringence property of calcium carbonate (particulate inorganic carbon) that it rotates the plane of linearly polarized incident light by 90 degrees.  Incident light directed upwards, towards the microscope slide, is polarized 90 degrees with a linear polarizer.  Particles are viewed from above the slide, through a second, linear polarizer filter held between the microscope stage and the camera which only accepts light that is polarized orthogonal to the lower polarizer.  Calcium carbonate particles in the beam appear as bright dots of light.  Image analysis software then analyzes the pattern of birefringence and enumerates only those particles with size and shape of coccolithophores or detached coccoliths.
DOI: 10.26008/1912/bco-dmo.890835.1
title: Nucleotide sequences of CsRV1 virus amplified from blue crabs (Callinectes sapidus) from coastal waters and estuaries in North and South America, including the Caribbean and Gulf of Mexico from 2006 to 2020

description: This record contains nucleotide sequences of CsRV1 virus amplified from blue crabs (Callinectes sapidus) across the study region.  RNA from crabs identified as infected using a sensitive Rt-qPCR assay was amplified using primers specific to segment and segment 9 of the virus genome.
 
A subset of CsRV1-positive RNA preparations were amplified using a full-genome amplification set of primers to amplify the entire CsRV1 genome. (http://primal.zibraproject.org; Quick et al. 2017).
 
The segment-specific data: seg9 (960 nt amplicon) and seg8 (807 nt amplicon) were trimmed and used to create maximum likelihood trees. Similarly, the full genome sequences were used for a maximum likelihood tree. 

In total, 22 complete or near-complete genomes, 42 seg8 ORF sequences, and 96 seg9 ORF sequences of CsRV1 were collected from 15 geographic locations along the US Atlantic coast, Gulf of Mexico, Caribbean Sea and S. America between 2006 – 2021.

Sequence generation and tree building was accomplished by Mingli Zhao with input from coauthors Plough and Kough. Pairwise analyses and ML trees can be found in the Supplemental Materials of results publication Zhao et al. (2023). The sequences generated in this study are deposited in NCBI GenBank, with accession numbers OP067244-OP067635 and are accessible under BioProject PRJNA939818.
DOI: 10.26008/1912/bco-dmo.890877.1
title: Single cell mass spectroscopy data collected to investigate metabolomics affected by cell-cell interactions in 2020 and 2021

description: Single-cell mass spectrometry (SCMS) was integrated with fluorescence microscopy to investigate metabolomics affected by cell-cell interactions in 2020 and 2021. These data were used to create a table in the publication of the results by Chen et al. (2022).
DOI: 10.5281/zenodo.15375675
title: KP RC Reports a46
DOI: 10.5281/zenodo.15375674
title: KP RC Reports a46
DOI: 10.48668/99hzbl/drdesu
title: HKSmartCityBlueprint(ENG)v2.pdf

description: :unav
DOI: 10.48668/99hzbl
title: Innovation and Technology Bureau (2020). Hong Kong Smart City Blueprint 2.0.

description: The Government published the Smart City Blueprint for Hong Kong in December 2017, setting out 76 initiatives under six smart areas, namely “Smart Mobility”, “Smart Living”, “Smart Environment”, “Smart People”, “Smart Government” and “Smart Economy”. Among them, the digital infrastructure projects and other major initiatives have been implemented as planned in the past three years, for example, the Faster Payment System, installing free public Wi-Fi hotspots, and the “iAM Smart” one-stop personalised digital services platform.
DOI: 10.5281/zenodo.15375678
title: KP RC Reports a47
DOI: 10.5281/zenodo.15375679
title: KP RC Reports a47
DOI: 10.15468/dl.skp5ck
title: Occurrence Download

description: A dataset containing 8807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rissoina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8807 records from 138 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002685-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4wh9h
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "TaxonKey is Encrasicholina oligobranchus"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002686-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56mxmk
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oligodon forbesi"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002688-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jx46f6
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Scirpodendron"
 ]
}

 The dataset includes 162 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002687-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgywxy
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oligodon hamptoni"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002689-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15375699
title: KP RC Reports a48
DOI: 10.5281/zenodo.15375698
title: KP RC Reports a48
DOI: 10.15468/dl.tegcfe
title: Occurrence Download

description: A dataset containing 851 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "TaxonKey is Encrasicholina punctifer"
 ]
}

 The dataset includes 851 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002691-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15375713
title: KP RC Reports a49
DOI: 10.5281/zenodo.15375712
title: KP RC Reports a49
DOI: 10.15468/dl.gjsetf
title: Occurrence Download

description: A dataset containing 22112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Processa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22112 records from 326 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002690-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edqpp3
title: Occurrence Download

description: A dataset containing 44700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Scirpoides"
 ]
}

 The dataset includes 44700 records from 694 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002692-260221153910048/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.