cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19793098
title: Improving Health Literacy: Analysis of the Relationship between Residents’ Usage of Information Channels and Health Literacy in Shanghai, China

description: A total of 1067 valid questionnaires were collected and analyzed. The questionnaire consisted of three parts: (1) sociodemographic variables, including age, gender, education level, monthly income, marital status, and health condition, including health self-assessment and number of chronic diseases; (2) the use of and degree of trust in different information channels; and (3) the evaluation of HL.
DOI: 10.6084/m9.figshare.19793098.v2
title: Improving Health Literacy: Analysis of the Relationship between Residents’ Usage of Information Channels and Health Literacy in Shanghai, China

description: A total of 1067 valid questionnaires were collected and analyzed. The questionnaire consisted of three parts: (1) sociodemographic variables, including age, gender, education level, monthly income, marital status, and health condition, including health self-assessment and number of chronic diseases; (2) the use of and degree of trust in different information channels; and (3) the evaluation of HL.
DOI: 10.6084/m9.figshare.19793098.v1
title: Improving Health Literacy: Analysis of the Relationship between Residents’ Usage of Information Channels and Health Literacy in Shanghai, China

description: A total of 1067 valid questionnaires were collected and analyzed. The questionnaire consisted of three parts: (1) sociodemographic variables, including age, gender, education level, monthly income, marital status, and health condition, including health self-assessment and number of chronic diseases; (2) the use of and degree of trust in different information channels; and (3) the evaluation of HL.
DOI: 10.5281/zenodo.6562881
title: Lookup table: grid_0_0.01_1_1_100_theta_0.01_depth_250

description: Composite likelihood lookup table for: rho value grid: "0,0.01,1,1,100" theta per site: 0.01 depth: 250
DOI: 10.5281/zenodo.6562880
title: Lookup table: grid_0_0.01_1_1_100_theta_0.01_depth_250

description: Composite likelihood lookup table for: rho value grid: "0,0.01,1,1,100" theta per site: 0.01 depth: 250
DOI: 10.5517/ccdc.csd.cc29k377
title: CCDC 2131598: Experimental Crystal Structure Determination

description: Related Article: İrfan Koca, Mehmet Yakan, İrfan Çapan, Ertan Şahin, Yusuf Sert|2022|J.Mol.Struct.|1264|133269|doi:10.1016/j.molstruc.2022.133269
DOI: 10.48420/19781164
title: Simultaneous Estimation of Gas Adsorption Equilibria and Kinetics of Individual Shaped Adsorbents

description: The data provided here includes all the experimental raw data, processed data, and the simulation results used to estimate the adsorption equilibria and kinetics of three shaped adsorbents reported in the article: Azzan, H.; Rajagopalan, A. K.; L'Hermitte, A.; Pini, R.; Petit, C. Simultaneous Estimation of Gas Adsorption Equilibria and<br> Kinetics of Individual Shaped Adsorbents. To know the specifics of the files being used in the computational tools please check the codes provided in https://github.com/ImperialCollegeLondon/ERASE<br>
DOI: 10.48420/19781164.v1
title: Simultaneous Estimation of Gas Adsorption Equilibria and Kinetics of Individual Shaped Adsorbents

description: The data provided here includes all the experimental raw data, processed data, and the simulation results used to estimate the adsorption equilibria and kinetics of three shaped adsorbents reported in the article: Azzan, H.; Rajagopalan, A. K.; L'Hermitte, A.; Pini, R.; Petit, C. Simultaneous Estimation of Gas Adsorption Equilibria and<br> Kinetics of Individual Shaped Adsorbents. To know the specifics of the files being used in the computational tools please check the codes provided in https://github.com/ImperialCollegeLondon/ERASE<br>
DOI: 10.5281/zenodo.6562982
title: Inputs of the Jupyter Notebook - Cosmos-UK soil moisture

description: The dataset contains the inputs of the notebook "Cosmos-UK soil moisture" published in The Environmental Data Science Book. The input data refer to a subset of the public 2013-2019 COSMOS-UK dataset, daily and subhourly observations and metadata for four stations: WYTH1, WADDN, SHEEP and CHIMN. These stations represent the first sites to prototype COSMOS sensors in the UK, see further details in Evans et al. (2016) and they are situated in human-intervened areas (grassland and cropland), except for one in a woodland land cover site. Data from COSMOS-UK up to the end of 2019 are available for download from the UKCEH Environmental Information Data Centre (EIDC). The data are accompanied by documentation that describes the site-specific instrumentation, data and processing including quality control. The full dataset is available for download under the terms of the Open Government License. <strong>Contributions</strong> <em>Notebook</em> Alejandro Coca-Castro (author), The Alan Turing Institute, @acocac Doran Khamis (reviewer), UK Centre for Ecology & Hydrology, @dorankhamis Matt Fry (reviewer), UK Centre for Ecology & Hydrology, @mattfry-ceh <em>Dataset originator/creator</em> UK Centre for Ecology & Hydrology (creator) Natural Environment Research Council (support) <em>Dataset reference and documentation</em> S. Stanley, V. Antoniou, A. Askquith-Ellis, L.A. Ball, E.S. Bennett, J.R. Blake, D.B. Boorman, M. Brooks, M. Clarke, H.M. Cooper, N. Cowan, A. Cumming, J.G. Evans, P. Farrand, M. Fry, O.E. Hitt, W.D. Lord, R. Morrison, G.V. Nash, D. Rylett, P.M. Scarlett, O.D. Swain, M. Szczykulska, J.L. Thornton, E.J. Trill, A.C. Warwick, and B. Winterbourn. Daily and sub-daily hydrometeorological and soil data (2013-2019) [cosmos-uk]. 2021. URL: https://doi.org/10.5285/b5c190e4-e35d-40ea-8fbe-598da03a1185, doi:10.5285/b5c190e4-e35d-40ea-8fbe-598da03a1185. <strong>Further references</strong> Jonathan G. Evans, H. C. Ward, J. R. Blake, E. J. Hewitt, R. Morrison, M. Fry, L. A. Ball, L. C. Doughty, J. W. Libre, O. E. Hitt, D. Rylett, R. J. Ellis, A. C. Warwick, M. Brooks, M. A. Parkes, G. M.H. Wright, A. C. Singer, D. B. Boorman, and A. Jenkins. Soil water content in southern england derived from a cosmic-ray soil moisture observing system – cosmos-uk. <em>Hydrological Processes</em>, 30:4987–4999, 12 2016. doi:10.1002/hyp.10929. M. Zreda, W. J. Shuttleworth, X. Zeng, C. Zweck, D. Desilets, T. Franz, and R. Rosolem. Cosmos: the cosmic-ray soil moisture observing system. <em>Hydrology and Earth System Sciences</em>, 16(11):4079–4099, 2012. URL: https://hess.copernicus.org/articles/16/4079/2012/, doi:10.5194/hess-16-4079-2012.
DOI: 10.3886/e170741
title: Effectiveness of four deconstructive meditative practices on well-being and self-deconstruction: Study protocol for an exploratory randomized controlled trial

description: <b>Background: </b>The efficacy of interventions based on mindfulness and compassion has been demonstrated in both clinical and general population, and in different social contexts. These interventions include so-called attentional and constructive meditation practices, respectively.However, unlike these, there is a third group, known as deconstructive meditation practices, which has not been scientifically studied. Deconstructive practices aim to undo maladaptive cognitive patterns and generate knowledge about internal models of oneself, others and the world. Although there are theoretical and philosophical studies on the origin of addiction to the self or on the mechanisms of action associated with the deconstruction of the self, there are no randomized controlled trials evaluating these techniques in either a healthy population or clinical samples.This study aims to evaluate the effect of three deconstructive techniques by comparing them to the practice of mindfulness in the general population.<b></b><b>Methods:</b>A randomized controlled clinical trial (RCT) will be conducted with about 240 participants allocated (1:1:1:1) to four groups: a) mindful breathing, b)prostrations, according to Tibetan Buddhist tradition; c) the Koan Mu, according to Zen Buddhist tradition; and d) the mirror exercise, according to Toltec tradition. The primary outcome will be the qualities of the non-dual experience and spiritual awakening, measured by the Nondual Embodiment Thematic Inventory, assessed at pre and post-treatment and at 3 and 6-month follow ups. Other outcomes will be mindfulness, happiness, compassion, affectivity and altered state of consciousness.Outcomes at each time point will be compared using mixed-effects linear regression models adjusted for baseline scores, sex and age.<b>Discussion:</b>This is the first RCT to apply deconstructive meditation techniques to evaluate their effect on the general population.The positive results of this project may have an important impact on the development of new interventions, not only to improve happiness and well-being in healthy populations but also potentially for the prevention and treatment of psychological and medical disorders, creating a new paradigm in the context of third-generation psychological interventions.<b></b>
description: General population.
DOI: 10.5281/zenodo.6517688
title: harAGE Corpus

description: The harAGE corpus is a novel dataset for Human Activity Recognition (HAR) collected with a customised app running on a Garmin Vivoactive 3 smartwatch. This dataset contains 17 h 37 m 20 s of data from 30 participants (14 f, 16 m), with a mean age of 40.0 (± 8.3) years old. The available data is split in 3 (train/devel/test) participant-independent and gender-balanced partitions, and contains samples of the 30 participants performing 8 different activities (lying, sitting, standing, washing hands, walking, running, stairs climbing, and cycling). A detailed documentation of this dataset can be found in [1]. If you use the harAGE Corpus in your research work, you are kindly asked to cite [1] and [2] in your publications. [1] A. Mallol-Ragolta, A. Semertzidou, M. Pateraki, and B. Schuller, “<strong>harAGE: A Novel Multimodal Smartwatch-based Dataset for Human Activity Recognition</strong>,” in <em>Proceedings of the 16th International Conference on Automatic Face and Gesture Recognition</em>, (Jodhpur, India – Virtual Event), IEEE, 2021. [2] B. Schuller, A Batliner, S. Amiriparian, C. Bergler, M. Gerczuk, N. Holz, P. Larrouy-Maestri, S. Bayerl, K. Riedhammer, A. Mallol-Ragolta, M. Pateraki, H. Coppock, I. Kiskin, M. Sinka, S. Roberts, "<strong>The ACM Multimedia 2022 Computational Paralinguistics Challenge: Vocalisations, Stuttering, Activity, & Mosquitos</strong>," in <em>Proceedings of 30th International Conference on Multimedia</em>, (Lisbon, Portugal), ACM, 2022.
DOI: 10.5281/zenodo.6517687
title: harAGE Corpus

description: The harAGE corpus is a novel dataset for Human Activity Recognition (HAR) collected with a customised app running on a Garmin Vivoactive 3 smartwatch. This dataset contains 17 h 37 m 20 s of data from 30 participants (14 f, 16 m), with a mean age of 40.0 (± 8.3) years old. The available data is split in 3 (train/devel/test) participant-independent and gender-balanced partitions, and contains samples of the 30 participants performing 8 different activities (lying, sitting, standing, washing hands, walking, running, stairs climbing, and cycling). A detailed documentation of this dataset can be found in [1]. If you use the harAGE Corpus in your research work, you are kindly asked to cite [1] and [2] in your publications. [1] A. Mallol-Ragolta, A. Semertzidou, M. Pateraki, and B. Schuller, “<strong>harAGE: A Novel Multimodal Smartwatch-based Dataset for Human Activity Recognition</strong>,” in <em>Proceedings of the 16th International Conference on Automatic Face and Gesture Recognition</em>, (Jodhpur, India – Virtual Event), IEEE, 2021. [2] B. Schuller, A Batliner, S. Amiriparian, C. Bergler, M. Gerczuk, N. Holz, P. Larrouy-Maestri, S. Bayerl, K. Riedhammer, A. Mallol-Ragolta, M. Pateraki, H. Coppock, I. Kiskin, M. Sinka, S. Roberts, "<strong>The ACM Multimedia 2022 Computational Paralinguistics Challenge: Vocalisations, Stuttering, Activity, & Mosquitos</strong>," in <em>Proceedings of 30th International Conference on Multimedia</em>, (Lisbon, Portugal), ACM, 2022.
DOI: 10.5517/ccyrj6d
title: CCDC 886544: Experimental Crystal Structure Determination

description: Related Article: Sreedasyam Jagannatha Swamy, Sunkari Jyothi, Pola Someshwar, Kundha Shashank, Gundapaneni Raghava Rao|2012|J.Applic.Chem.|1|218|
DOI: 10.5258/soton/d2217
title: Dataset for the article entitled "Pollutant dispersion by tall buildings: Laboratory experiments and Large-Eddy Simulation"

description: Data supports: Lim, H.D., Hertwig, D., Grylls, T., Gough, H., van Reeuwijk, M., Grimmond, S., & Vanderwel, C. (2022). Experiments in Fluids. (DOI: 10.1007/s00348-022-03439-0). This dataset contains PIV-PLIF experimental data in the folder 'Experiments' and numerical simulation data in the folder 'LES'. Within each folder, readme files are provided explaining the data fields and how to interpret them. The data files are in .mat format.
DOI: 10.5281/zenodo.6562765
title: Raw data for DNA-PAINT MINFLUX nanoscopy

description: Raw data sets for "DNA-PAINT MINFLUX nanoscopy" by Lynn M. Ostersehlt (1), Daniel C. Jans (1,2), Anna Wittek (1,2), Jan Keller-Findeisen (1), Steffen J. Sahl (1),<br> Stefan W. Hell (1,3,4), and Stefan Jakobs (1,2,4,5) 1 Max Planck Institute for Multidisciplinary Sciences, Department of NanoBiophotonics, Göttingen, Germany<br> 2 University Medical Center Göttingen, Department of Neurology, Göttingen, Germany<br> 3 Max Planck Institute for Medical Research, Department of Optical Nanoscopy, Heidelberg, Germany<br> 4 Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC),<br> University of Göttingen, Germany<br> 5 Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Translational Neuroinflammation and<br> Automated Microscopy, Göttingen, Germany<br> <br> to appear in Nature Methods<br> <br> Contact: stefan.jakobs@mpinat.mpg.de The raw data is provided for academic and visualization purposes only. Please contact the authors for further inquiries.
description: {"references": ["\"DNA-PAINT MINFLUX nanoscopy\" to appear in Nature Methods"]}
DOI: 10.5281/zenodo.6562764
title: Raw data for DNA-PAINT MINFLUX nanoscopy

description: Raw data sets for "DNA-PAINT MINFLUX nanoscopy" by Lynn M. Ostersehlt (1), Daniel C. Jans (1,2), Anna Wittek (1,2), Jan Keller-Findeisen (1), Steffen J. Sahl (1),<br> Stefan W. Hell (1,3,4), and Stefan Jakobs (1,2,4,5) 1 Max Planck Institute for Multidisciplinary Sciences, Department of NanoBiophotonics, Göttingen, Germany<br> 2 University Medical Center Göttingen, Department of Neurology, Göttingen, Germany<br> 3 Max Planck Institute for Medical Research, Department of Optical Nanoscopy, Heidelberg, Germany<br> 4 Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC),<br> University of Göttingen, Germany<br> 5 Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Translational Neuroinflammation and<br> Automated Microscopy, Göttingen, Germany<br> <br> to appear in Nature Methods<br> <br> Contact: stefan.jakobs@mpinat.mpg.de The raw data is provided for academic and visualization purposes only. Please contact the authors for further inquiries.
description: {"references": ["\"DNA-PAINT MINFLUX nanoscopy\" to appear in Nature Methods"]}
DOI: 10.34740/kaggle/dsv/3661841
title: AutoXGB
DOI: 10.5281/zenodo.6542883
title: Isomorph Invariant Dynamic Mechanical Analysis: A Molecular Dynamics Study

description: This data set contains the data required to reproduce most of the figures in our paper, [arXiv:2204.06962] which will soon be submitted to a journal. Abstract of the paper: We simulate dynamic mechanical analysis experiments for the Kob-Andersen binary Lennard-Jones system. For this, the SLLOD algorithm with time-dependent strain rates is applied to give a sinusoidally varying strain at different densities and temperatures. The starting point is a temperature scan at a fixed reference density. Isomorph theory predicts that for other densities corresponding temperatures can be identified at which the mechanical properties are unchanged when scaled appropriately. We determine the isomorphically equivalent temperatures by analysing how<br> particle forces change upon scaling configurations to the new density. Loss moduli expressed in suitable reduced units are compared for isomorphic state points. When plotted against the unscaled temperatures, these reduced loss curves are observed to collapse indicating the validity of isomorph theory for dynamic mechanical analysis experiments. Two different methods to determine isomorphic temperatures are considered. While one of them breaks down for the largest density rescalings considered in this study, the other one is still applicable in this region. The decorrelation of force vectors upon rescaling is investigated as a possible origin of this effect. Our results demonstrate that the simplification of the phase diagram entailed by isomorph theory for a wide class of system<br> is relevant also for the mechanical properties of glasses.
DOI: 10.5258/soton/d2219
title: Data to support the article "Spontaneous formation of time-periodic vortex cluster in nonlinear fluids of light"

description: Data from experimental measurements and numerical simulations used to create the figures and animations in the paper Sitnik, K., Alyatkin, S., Töpfer, J.D., Gnusov, I., Cookson, T., Sigurdsson, H., & Lagoudakis, P.G. (2022) Spontaneous formation of time-periodic vortex cluster in nonlinear fluids of light. in Physical Review Letters.
DOI: 10.6084/m9.figshare.19793728
title: Supplementary Material for: miR-142-5p Encapsulated by Serum-Derived Extracellular Vesicles Protects against Acute Lung Injury in Septic Rats following Remote Ischemic Preconditioning via the PTEN/PI3K/Akt Axis

description: This study intends to investigate the effects of miR-142-5p encapsulated by serum-derived extracellular vesicles (EVs) on septic acute lung injury (ALI) following remote ischemic preconditioning (RIPC) through a PTEN-involved mechanism. ALI was induced in rats by lipopolysaccharide (LPS) injection, 24 h before which RIPC was performed via the left lower limb. Next, the binding affinity between miR-142-5p and PTEN was identified. EVs were isolated from serum and injected into rats. The morphology of lung tissues, pulmonary edema, and inflammatory cell infiltration into lung tissues were then assessed, and TNF-α and IL-6 levels in serum and lung tissues were measured. The results indicated that RIPC could attenuate ALI in sepsis. miR-142-5p expression was increased in serum, lung tissues, and serum-derived EVs of ALI rats following RIPC. miR-142-5p could target PTEN to activate the PI3K/Akt signaling pathway. miR-142-5p shuttled by serum-derived EVs reduced pulmonary edema, neutrophil infiltration, and TNF-α and IL-6 levels, thus alleviating ALI in LPS-induced septic rats upon RIPC. Collectively, serum-derived EVs-loaded miR-142-5p downregulated PTEN and activated PI3K/Akt to inhibit ALI in sepsis following RIPC, thus highlighting potential therapeutic molecular targets against ALI in sepsis.
DOI: 10.5281/zenodo.6563060
title: Point-of-care monitoring of head and neck cancer treatment response and recurrence development using nanopore-based ctDNA consensus sequencing

description: Circulating tumor DNA (ctDNA) in blood may become a generic biomarker for non-invasive cancer diagnosis and monitoring. However, detection of ctDNA is challenged by the presence of many circulating DNA molecules from healthy cells. We found that single ctDNA molecules can be sequenced with high accuracy by a three-step process consisting of capturing, copying and concatenation of the original double-stranded ctDNA molecules. This innovative approach - called CyclomicsSeq - is unparalleled by any other method in terms of cost-efficiency and speed, allowing point-of-care cancer diagnostics. Within this CPOC, subsidized by the Oncode institute, we have applied our CyclomicsSeq ctDNA test in patients with advanced head and neck cancer squamous cell carcinoma (HNSCC). Head and neck cancer (HNSCC) accounts for 380,000 cancer-related deaths worldwide. For these patients, determining whether a patient responds to the primary chemoradiation treatment is challenging, and non-responders are sometimes identified when other treatment options are no longer possible. By measuring the ctDNA levels in the blood of these patients prior to and during treatment, we aim to identify non-responders at an earlier stage. This dataset contains base calls of TP53 of 47 nanopore sequencing runs. We included 10 patients and 7 controls. For the patients, we have samples of multiple time points (0 = prior to treatment, 1 = 1 week after treatment initiation, etc).
description: This research was funded by the Oncode Institute
DOI: 10.5281/zenodo.6563059
title: Point-of-care monitoring of head and neck cancer treatment response and recurrence development using nanopore-based ctDNA consensus sequencing

description: Circulating tumor DNA (ctDNA) in blood may become a generic biomarker for non-invasive cancer diagnosis and monitoring. However, detection of ctDNA is challenged by the presence of many circulating DNA molecules from healthy cells. We found that single ctDNA molecules can be sequenced with high accuracy by a three-step process consisting of capturing, copying and concatenation of the original double-stranded ctDNA molecules. This innovative approach - called CyclomicsSeq - is unparalleled by any other method in terms of cost-efficiency and speed, allowing point-of-care cancer diagnostics. Within this CPOC, subsidized by the Oncode institute, we have applied our CyclomicsSeq ctDNA test in patients with advanced head and neck cancer squamous cell carcinoma (HNSCC). Head and neck cancer (HNSCC) accounts for 380,000 cancer-related deaths worldwide. For these patients, determining whether a patient responds to the primary chemoradiation treatment is challenging, and non-responders are sometimes identified when other treatment options are no longer possible. By measuring the ctDNA levels in the blood of these patients prior to and during treatment, we aim to identify non-responders at an earlier stage. This dataset contains base calls of TP53 of 47 nanopore sequencing runs. We included 10 patients and 7 controls. For the patients, we have samples of multiple time points (0 = prior to treatment, 1 = 1 week after treatment initiation, etc).
description: This research was funded by the Oncode Institute