cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23690976.v1
title: <b>Dataset: Plant silicon defence disrupts cryptic colouration in an insect herbivore by restricting carotenoid sequestration into the haemolymph</b>

description: This dataset supports a study investigating how plant silicon influences carotenoid and chlorophyll sequestration in <i>Helicoverpa armigera</i> larvae, and how these changes affect the expression of larval green cryptic colouration. The associated article has been accepted for publication in <i>Physiological Entomology</i>.
DOI: 10.6084/m9.figshare.9724613.v1
title: Ancient Greek stop words

description: Ancient Greek stop word list compiled for the project 'Computational models of meaning change in natural language texts', The Alan Turing Institute, London, 2018. Lemma IDs correspond to those used in the Diorisis corpus (https://figshare.com/articles/The_Diorisis_Ancient_Greek_Corpus/6187256)
DOI: 10.17632/f239gwztnm
title: Growth of the maternal intestine during reproduction. Ameku et al

description: Dataset Ameku et al., Cell 2025
DOI: 10.6084/m9.figshare.11889804.v1
title: Supplementary Material for: Investigation of the Effect of Secreted Factors from Mesenchymal Stem Cells on Disc Cells from Degenerated Discs

description: Low back pain is experienced by a large number of people in western countries and may be caused and influenced by many different pathologies and psychosocial factors including disc degeneration. Disc degeneration involves the increased expression of proinflammatory cytokines and matrix metalloproteinases (MMPs) in the disc environment, which leads to the loss of extracellular matrix (ECM) and the viability of the native disc cells (DCs). Treatment approaches using growth factors and cell therapy have been proposed due to the compelling results that growth factors and mesenchymal stem cells (MSCs) can influence the degenerated discs. The aim of this study was to investigate the effects of conditioned media (CM) from human MSCs (hMSCs) and connective tissue growth factor (CTGF) and TGF-β on disc cells, and hMSCs isolated from patients with degenerative discs and severe low back pain. The aim was also to examine the constituents of CM in order to study the peptides that could bring about intervertebral disc (IVD) regeneration. DCs and hMSC pellets (approx.. 200,000 cells) were cultured and stimulated with hMSC-derived CM or CTGF and TGF-β over 28 days. The effects of CM and CTGF on DCs and hMSCs were assessed via cell viability, proteoglycan production, the expression of ECM proteins, and chondrogenesis in 3D pellet culture. To identify the constituents of CM, CM was analyzed with tandem mass spectrometry. The findings indicate that CM enhanced the cellular viability and ECM production of DCs while CTGF and the control exhibited nonsignificant differences. The same was observed in the hMSC group. Mass spectrometry analysis of CM identified &gt;700 peptides, 129 of which showed a relative abundance of ≥2 (CTGF among them). The results suggest that CM holds potential to counter the progression of disc degeneration, likely resulting from the combination of all the substances released by the hMSCs. The soluble factors released belong to different peptide families. The precise mechanism underlying the regenerative effect needs to be investigated further, prior to incorporating peptides in the development of new treatment strategies for low back pain that is potentially caused by IVD degeneration.
DOI: 10.6084/m9.figshare.1431535.v1
title: Temporal and Spatial Trends in Urban-rural Disparities in Healthcare Demand in China

description: Rural per capita net income in PR China (1999-2012); Rural per capita healthcare consumer spending in PR China (1999-2012); Urban per capita disposable income in PR China (1999-2012); Urban per capita healthcare consumer spending in PR China (1999-2012); The medical care consumer price index in PR China (1999-2012).
DOI: 10.6084/m9.figshare.14442185.v1
title: Korso_genome.fa.gz

description: Korso genome sequence
DOI: 10.6084/m9.figshare.19733860.v1
title: muDmelDsim

description: The phased haplotypes for three populations: the West African <em>D. melanogaster</em> (dmeA), the European <em>D. melanogaster </em>(dmeE) and the European<em> D. simulans</em> (dsim). There are 24 haplotypes for each population. File names: 'population_family_sex_haplotypes.fa.fz'. <br> !! if you want to use the data for publication, please contact wang.yiguan@gmail.com
DOI: 10.6084/m9.figshare.24297604.v2
title: GRACE input

description: Filling GRACE Data Gap Using an Innovative Transformer-Based Deep Learning ApproachWang, L., & Zhang, Y. (2024). Filling GRACE data gap using an innovative transformer-based deep learning approach. <i>Remote Sensing of Environment</i>, <i>315</i>, 114465. https://doi.org/10.1016/j.rse.2024.114465The source code in https://github.com/GISWLH/Transformer_GRACE
DOI: 10.17632/x4g4f3t98p
title: Explosions along Lyapunov orbits

description: Explosions dataset that includes the evolution of the state vectors for each fragment and the initial orbits IC of specific L1 and L2 Lyapunov orbits.
DOI: 10.6084/m9.figshare.28321559.v3
title: CGFlow supplementary data

description: Contains preprocessed CrossDock dataset for training pose prediction and the pretrained pose prediction model. <br><br>
DOI: 10.17632/ndy5r67zxz
title: Data for: Real-time Analysis and Regulation of EPB Shield Steering Using Random Forest Approach

description: The database includes the data used in this paper.
DOI: 10.17632/b9trv5djj5
title: Data for: Evolution behavior of liquid film in the heat-affected zone of laser cladding non-weldable nickel-based superalloy

description: Phase composition in K447A superalloy obtained via EPMA and the friction of solid in the grain boundary of K447A superalloy obtained via JMatPro software are listed.
DOI: 10.17632/ghn9z27z6b
title: Reinforced Concrete Beams without Stirrups 

description: RC beams in simply supported conditions without transverse steel or stirrups (BWOS)
DOI: 10.6084/m9.figshare.23896434.v2
title: Automatically Generated FAIR Datasets: A Survey of Present and Potential Outdoor Self-Cleaning Coating Materials by an Advanced Literature Screening Strategy

description: In this work, we use Natural Language Processing (NLP) strategies to generate open- and traceable-sourced FAIR (findable, accessible, interoperable and reusable) datasets about self-cleaning coating materials from 39,011 multi-disciplinary papers. The data are from function-based and property-based corpora for self-cleaning purposes. These datasets are presented in four different formats for diverse uses or combined uses: material frequency statistics, material dictionary, measurement value datasets for self-cleaning-related properties and optical properties, and sentiment statistics of material stability and durability. This provides a literature-based, comprehensive and highly-refined data resource for the development of self-cleaning coatings and also offers potential pathways for material discovery and prediction by machine learning.
DOI: 10.6084/m9.figshare.24961392.v1
title: Multiple Pesticides Experiment Data

description: This is data generated from an experiment examining the impacts of multiple pesticides and rate of application on key soil processes including, litter decomposition, water stable aggregates (WSA), mean weight diameter (MWD), soil pH, and electrical conductivity (EC).
DOI: 10.6084/m9.figshare.22606459.v1
title: Neogen GGP Porcine 50K SNP genotype data

description: Filtered genotype data set.
DOI: 10.6084/m9.figshare.23607723.v1
title: patient35.rar

description: A Patient with fundus images that taken by Ret-cam.
DOI: 10.6084/m9.figshare.24270205.v1
title: The chromosome scale genome assembly sequence and annotaion of Chinese alligator

description: The chromosome scale genome assembly sequence and annotaion of Chinese alligator.
DOI: 10.17632/5y725j47wf
title: Large supporting files for ANGSA X-ray CT paper

description: This data repository contains the supporting large files (Tables S1 and S2; Movies S1 and S2) for manuscript by Eckley et al., 2025 titled, "Utilization of X-ray Computed Tomography During the Preliminary Examination of Unopened Apollo Drive Tube Samples 73001 and 73002" in the Journal of Geophysical Research: Planets.
DOI: 10.17632/rn3htwbvh6
title: Alopecia Areata in Solid Organ Transplant Recipients: A Retrospective Analysis

description: Supplementary Table 1. Alopecia areata history, associated autoimmune diseases, treatment and outcomes.
DOI: 10.6084/m9.figshare.10248494.v1
title: Fig. S7A_JB1-delta site-c2-cl15_NPC.zip

description: Immunofluorescence staining microscopy images related to Fig.S7A (Number of associated file: 1)<br><br>Manuscript: Lleres, David; Moindrot, Benoit; Noordermeer, Daan; Feil, Robert (2019), “CTCF modulates allele-specific sub-TAD organisation and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains”
DOI: 10.6084/m9.figshare.20490051.v1
title: Trichocomaceae alignment files

description: Supplementary phylogenetic data referenced in the article: "Two new species of <i>Trichocomaceae</i> (<i>Eurotiales</i>), accommodated in <i>Rasamsonia</i> and <i>Talaromyces</i> section <i>Bacillispori</i>, from the Czech Republic"DOI: 10.1038/s41598-023-42002-7Contains alignments and corresponding ML/BI trees.<br>
DOI: 10.17632/9yz3yg9cmd
title: Data used in "Influence of Physical and Chemical Hydrology on Bioremediation of a U-contaminated Aquifer Informed by Modeling Incorporating 238U/235U Ratios"

description: Input, result, and database files used in "Influence of Physical and Chemical Hydrology on Bioremediation of a U-contaminated Aquifer Informed by Reactive Transport Modeling Incorporating 238U/235U Ratios"
DOI: 10.6084/m9.figshare.27629706.v2
title: Research Integrity Training — Needs and provisions in institutions in China

description: The results of a national survey within China investigating perceived provision and adequacy of research integrity training by institutions. Research was conducted by Springer Nature. Results were gathered from 1,008 participants from roughly 450 organisations across China.​Authored by Farah Aldabbagh and Ed Gerstner.
DOI: 10.6084/m9.figshare.28057997.v4
title: Observed GEM and DGM data in the Arctic Ocean

description: This dataset includes the observed concentrations of both atmospheric gaseous elemental mercury and marine dissolved gaseous mercury, and the corresponding auxiliary data. This dataset was acquired in the Arctic Ocean in summertime, 2023. This dataset also includes Generalized Additive Model (GAM) code implemented in R to simulate the GEM concentration in the Arctic Ocean during the corresponding cruise and assess the relative contributions of individual variables.
DOI: 10.17632/m5vmmkvx22
title: Data_and_data-description

description: The data are used for the study of Van Drone Routing Problem with Multiple Delivery Points and Cooperation (VDRPMDPC). The excel (.xlsx) files contains the road distances between 40, 60, 100 clients placed in Western Attica. Also, contains the Euclidian distances for the same clients. The road distances are used from the vehicles and the Euclidian distances from the drones. Finally, the word (.doc) file is the explanation memo for the excel files.
DOI: 10.6084/m9.figshare.10280573.v1
title: Density-dependent mechanisms regulate spore formation in the diatom Chaetoceros socialis

description: Dataset used in the paper:"Density-dependent mechanisms regulate spore formation in the diatoms <i>Chaetoceros socialis</i>"<br><b></b><br>
DOI: 10.6084/m9.figshare.15059328.v1
title: Supplementary Material for: Quantitative Dynamic Contrast-Enhanced Magnetic Resonance Imaging for the Analysis of Microvascular Permeability in Peritumor Brain Edema of Fibrous Meningiomas

description: <b><i>Introduction:</i></b> This study aims to analyze the permeability of intra- and peri-meningiomas regions and compare the microvascular permeability between peritumoral brain edema (PTBE) and non-PTBE using DCE-MRI. <b><i>Methods:</i></b> This was a retrospective of patients with meningioma who underwent surgery. The patients were grouped as PTBE and non-PTBE. The DCE-MRI quantitative parameters, including volume transfer constant (<i>K</i><sup>trans</sup>), rate constant (<i>K</i><sub>ep</sub>), extracellular volume (<i>V</i><sub>e</sub>), and mean plasma volume (<i>V</i><sub>p</sub>), obtained using the extended Tofts-Kety 2-compartment model. Logistic regression analysis was conducted to explore the risk factor of PTBE. <b><i>Results:</i></b> Sixty-three patients, diagnosed as fibrous meningioma, were included in this study. They were 17 males and 46 females, aged from 32 to 88 years old. <i>K</i><sub>ep</sub> and <i>V</i><sub>p</sub> were significantly lower in patients with PTBE compared with those without (<i>K</i><sub>ep</sub>: 0.1852 ± 0.0369 vs. 0.5087 ± 0.1590, <i>p</i> = 0.010; <i>V</i><sub>p</sub>: 0.0090 ± 0.0020 vs. 0.0521 ± 0.0262, <i>p</i> = 0.007), while there were no differences regarding <i>K</i><sup>trans</sup> and <i>V</i><sub>e</sub> (both <i>p</i> &gt; 0.05). The multivariable analysis showed that tumor size ≥10 cm<sup>3</sup> (OR = 4.457, 95% CI: 1.322–15.031, <i>p</i> = 0.016) and <i>V</i><sub>p</sub> (OR = 0.572, 95%CI: 0.333–0.981, <i>p</i> = 0.044) were independently associated with PTBE in patients with meningiomas. <b><i>Conclusion:</i></b> DCE-magnetic resonance imaging·Meningioma·Blood vessel MRI can be used to quantify the microvascular permeability of PTBE in patients with meningioma.
DOI: 10.6084/m9.figshare.3472646.v2
title: Data of temporal host-parasite network. Original publication: Pilosof S, et al. Nature Ecol Evol 2017.

description: Please cite us when using these data:<br>Pilosof S, Porter MA, Pascual M, Kefi S. The multilayer nature of ecological networks. (2017) Nature Ecology & Evolution. <br><br>A temporal network that encodes the infection of 22 small mammalian host species by 56 ectoparasite species (mites and fleas) during six consecutive summers in Siberia (1982--1987), giving 6 different layers for a temporal multilayer network. Not all species occur in all years. The data set also includes the number of host specimens collected in the field and the number of parasites recovered from each host specimen. We use these individual-level estimates of host and parasite abundances, respectively, to determine the weights of intralayer and interlayer edges (see the R code). <br>Previous versions of this data set were used in:1. Krasnov, B. R., Matthee, S., Lareschi, M., Korallo-Vinarskaya, N. P. & Vinarski, M. V. Co-occurrence of ectoparasites on rodent hosts: null model analyses of data from three continents. <i>Oikos</i> <b>119,</b> 120–128 (2010).<br>2. Pilosof, S., Fortuna, M. A., Vinarski, M. V., Korallo-Vinarskaya, N. P. & Krasnov, B. R. Temporal dynamics of direct reciprocal and indirect effects in a host-parasite network. <i>J. Anim. Ecol.</i> <b>82,</b> 987–996 (2013).
DOI: 10.6084/m9.figshare.21922929.v1
title: 16S raw data for mice (Gut microbiota aggravates neutrophil extracellular traps-induced pancreatic injury in hypertriglyceridemic pancreatitis)

description: 16S raw data for mice. FMT experimental design, C57BL/6 mice were colonized with fecal samples obtained from HC, HTG and HTGP donors.
DOI: 10.6084/m9.figshare.22118345.v1
title: Data.xlsx

description: Share price and ownership data
DOI: 10.6084/m9.figshare.25323358.v1
title: Soil organic carbon (SOC) dynamic of China's croplands over the past 40 years

description: Soil organic carbon (SOC) dynamic of China's croplands over the past 40 years, estimated by this publication:Lin Z, Xu Y, Lu X, Sun W, Yu Y, Zhang W, Mishra U, Kuzyakov Y, Wang G, Qin Z. Straw return to croplands has been a major determining factor in the increase of soil organic carbon in China’s croplands over the past 40 years.
DOI: 10.6084/m9.figshare.c.3665698_d3.v1
title: MOESM2 of Simultaneous analyses of N-linked and O-linked glycans of ovarian cancer cells using solid-phase chemoenzymatic method

description: Additional file 2: Table S2. LC-ESI-MS quantification of OVCAR-3 cell lines released by PNGase F via solid-phase chemoenzymatic method. The released N-glycans are labeled with QUANTITY tags (4-plex). The labeled N-glycans are pooled for analysis by LC-ESI-MS. Oliogosaccharide and complex N-glycans are listed by their composition. (QU = QUANTITY; RT = retention time; Y = identified)
DOI: 10.17632/bcrddgmzk9
title: Dataset of Scopus-indexed educational publications from Vietnam, 2014-2023

description: This dataset contains 877 Scopus-indexed publications on educational sciences co-authored by Vietnamese scholars between 2014 and 2023. In addition to the metadata provided by Scopus, the dataset also includes other information manually collected and labeled by the authors, such as the research method used in each publication and the educational level addressed in each publication. This dataset was initiated as part of a collaborative project between the Vietnam Science Editor Group and the REK Institute for Research on Education and Knowledge Transfer, Thanh Do University.
DOI: 10.6084/m9.figshare.22117703.v3
title: Cross-disciplinary competences and school-life balance among VET students during Covid-19 pandemic

description: Dataset used for the study reported in Sánchez-Martí, Ciraso-Calí, Fernández-Sequi & Pineda-Herrero (2023). The school-life balance effect on acquiring cross-disciplinary competences in VET: disruption or continuity during COVID-19? <em>Vocations and Learning</em> (in press). <br> The original questionnaire was in Catalan. A translation into English is provided only for understanding porpuses, but has not been back-translated and validated. <br> For any inquiry about the data, the tool or the research, please contact anna.ciraso@uab.cat
DOI: 10.6084/m9.figshare.25256992.v1
title: Inosperma pavithrum from Kerala

description: A new species of Inosperma from Kerala State, India
DOI: 10.6084/m9.figshare.28271363.v1
title: <b>The scaling of seed-dispersal specialization in interaction networks across levels of organization</b>

description: Supplementary Material - List of references supporting the manuscript accepted in Ecography (ECOG-07771.R2)List of articles based on an updated bibliographic search using the following search string on Web of Science and Google Scholar:"dispersal" AND "network" AND "seed" OR "fruit" AND “seed dispersal network” OR “frugivory dispersal network” OR “plant-frugivory network” OR “mutualistic interaction network” OR “meta-network” OR “individual-based network” OR “macroecological interactions” OR “specialization” OR “<i>H</i><sub><em>2</em></sub><i>′ </i>”<i> </i>and “<i>d’ </i>”The corresponding SupMat file is organized following the sections in the manuscript (network organization levels and analytical units), listing the literature used in each of these. However, there a was a change in the titles of such sections that was not reflected in the final SupMat file. These correct titles per section should be the following: <b>a)</b><b> </b><b>Community specialization – species-based networks</b><b>b)</b><b> </b><b>Community specialization – Meta-networks</b><b>c)</b><b> </b><b>Species specialization – Species-based networks</b><b>d)</b><b> </b><b>Species specialization </b><b>– Meta-networks</b><b>e)</b><b> </b><b>Individual specialization</b>
DOI: 10.17632/3kbvcwszx5
title: Estimating socioeconomic status for health equity surveillance in Cameroon: an expert opinion survey

description: Background: Despite increasing awareness of socioeconomic status’s (SES) association with health outcomes, there is no widely accepted and rapidly implementable estimation of SES measures in resource-limited settings. An exception is the Demographic and Health Surveys (DHS)’s wealth quintile index constructed from household ownership assets. To facilitate health equity surveillance, method of individual SES estimation requiring fewer number of household assets is needed. The objective of this study was to identify the DHS assets most relevant for measuring SES in Cameroon. 
Methods: Participants interviewed with a structured questionnaire included stakeholders involved in the design and implementation of DHS in Cameroon for many years. Using a 5-point Likert scale, experts graded DHS assets’ likelihood to measure SES. The questionnaire was strongly reliable (Cronbach’s alpha: 0.943, 95% CI: 0.920 - 0.961, p&lt;0.001) for using the 29 items retained to measure SES. 
Results: The probabilities of agreeing that an asset can be a useful measure of SES varied from 0.016 to 0.047. The 12 DHS assets most likely to measure SES included having Refrigerator(85.3%), Television(83.8%), Laptop(79.4%), Mixer(77.9%), Computer(77.9%), Agricultural land(77.9%), Cable/Satellite(76.5%), Cell phone(76.5%), Modem/Internet key(73.5%), Water pump(72.1%), Car/truck(72.1%) and Gas stove(72.1%) with a respective probability (prior) of 0.047, 0.046, 0.044, 0.043, 0.043, 0.043, 0.042, 0.042, 0.041, 0.040, 0.040 and 0.040. 
Conclusions: This research underscores the importance of integrating local expert insights to refine the measurement of SES, promoting improved health outcomes in populations, particularly in Cameroon. Future research should explore the application of this expert-opinion-driven framework in various contexts to create more comprehensive, robust, and reliable SES indicators.
Keywords: Prior Probability, Expert Opinion, Demographics and Health Survey, Socioeconomic Status, Health equity
DOI: 10.17632/w36ns2t3rd
title: 1D Core-collapse Supernova Simulations with Updated N=50 Electron Capture Rates

description: This dataset contains the results and analysis presented in "Comparison of Electron Capture Rates in the N=50 Region using 1D Simulations of Core-collapse Supernovae", Johnston et al. (2022).

In this work, we ran 612 one-dimensional (1D) core-collapse supernovae (CCSNe) simulations using three different sets of electron-capture (EC) rates as input:

1. IPA: independent particle approximation, a simple parametrization based on Bruenn (1985)
2. LMP: microphysical rate library, including a parametrization based on Langanke et al. (2003)
3. LMP+N50: same as LMP, but with updated rates in the high-sensitivity N=50 region from Titus et al. (2019)

1D CCSN simulations were performed using each EC rate set for 200 stellar progenitors from Sukhbold et al. (2016), ranging in ZAMS mass from 9 to 120 Msun.

In addition to this main set of 600 models, we ran a smaller set of simulations for the 12, 20, and 40 Msun progenitors using modified versions of the LMP and LMP+N50 rates, where the rates scaled by factors of 10 and 0.01, resulting in an additional 12 models.

The simulations were compared to investigate the impact of the different EC rates on the mechanism and outcome of core-collapse, including the observable neutrino emission.

Further detail on the EC rates, the CCSN simulations, and how this data was analyzed is provided in the associated paper. 

Specific details on the dataset contents are provided in the README file below.

If you use this data, please include a citation to this dataset and the associated paper appropriately.

Version 2 changes: Renamed SNA to IPA
DOI: 10.17632/zzc4hxv6p9
title: Computed optical spectra of SARS-CoV-2 proteins

description: Computed optical spectra of SARS-CoV-2 proteins, calculated as described in https://doi.org/10.26434/chemrxiv.12451922.v1
DOI: 10.6084/m9.figshare.10310777.v1
title: predicted CDS sequences of Folsomia candida

description: predicted CDS sequences of Folsomia candida