cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5hmfcy
title: Occurrence Download

description: A dataset containing 83993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhus typhina L."
 ]
}

 The dataset includes 83993 records from 528 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000743-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gakxnh
title: Occurrence Download

description: A dataset containing 18229 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos del Herbario CIQR de El Colegio de la Frontera Sur, unidad Chetumal"
 ]
}

 The dataset includes 18229 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012840-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfgi9g
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcebus lehilahytsara Roos & Kappeler, 2005"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015273-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbtxer
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données de Shell Exploration and Production France - Données d'observation opportunistes collectées durant la campagne de prélèvements sédimentaires SHELL/CREOCEAN en Guyane française en 2013. Shell Exploration and Production France"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023133-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmvrxv
title: Occurrence Download

description: A dataset containing 8802722 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-97.21802 25.8728,-98.88794 26.09253,-99.81079 27.38892,-101.04126 29.25659,-102.052 29.60815,-103.23853 29.49829,-103.32642 28.88306,-104.22729 29.34448,-104.99634 30.48706,-106.11694 31.36597,-106.71021 31.7395,-107.4353 32.31079,-109.7644 32.44263,-112.97241 32.15698,-112.02759 30.26733,-110.42358 28.15796,-107.69897 25.21362,-102.97485 24.13696,-100.84351 23.87329,-97.70142 23.87329,-97.21802 25.8728))"
 ]
}

 The dataset includes 8802722 records from 839 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012840-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxapid
title: Occurrence Download

description: A dataset containing 6936 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ligustrum lucidum W.T.Aiton"
 ]
}

 The dataset includes 6936 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015273-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tamfbe
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rytidosperma clavatum (Zotov) Connor & Edgar"
 ]
}

 The dataset includes 173 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000391-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kowif2
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Palisota brachythyrsa Mildbr.",
 "Country is Gabon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015271-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ythmrt
title: Occurrence Download

description: A dataset containing 66064 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 66064 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012841-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkt5rw
title: Occurrence Download

description: A dataset containing 1186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zamia furfuracea L.f."
 ]
}

 The dataset includes 1186 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021072-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.20in2g
title: Occurrence Download

description: A dataset containing 13979 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is HZI (GBF) Reichenbach Collection of Myxobacteria"
 ]
}

 The dataset includes 13979 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015274-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x0st4i
title: Occurrence Download

description: A dataset containing 2047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Choeronycteris mexicana Tschudi, 1844"
 ]
}

 The dataset includes 2047 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012841-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jb5loe
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Données opportunistes issues de la Réserve Naturelle Nationale de l'Ile du Grand-Connétable et Groupe d’Étude et de Protection des Oiseaux en Guyane - Données d'observation opportunistes collectées par la Réserve Naturelle Nationale de l'Ile du Grand-Connétable et le Groupe d'Etude et de Protection des Oiseaux en Guyane"
 ]
}

 The dataset includes 33 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023134-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.contbg
title: Occurrence Download

description: A dataset containing 6216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 2000",
 "TaxonKey is Euphausia superba Dana, 1850"
 ]
}

 The dataset includes 6216 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012841-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzdp0b
title: Occurrence Download

description: A dataset containing 276189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is China"
 ]
}

 The dataset includes 276189 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015275-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9suabg
title: Occurrence Download

description: A dataset containing 17696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 17696 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081670-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btzrxw
title: Occurrence Download

description: A dataset containing 2250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synbranchus marmoratus Bloch, 1795"
 ]
}

 The dataset includes 2250 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015276-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28423850
title: Merkus Pine Morphological Data

description: Data consist of two types: length and diameter of Merkus Pine yearly.
DOI: 10.6084/m9.figshare.28423850.v1
title: Merkus Pine Morphological Data

description: Data consist of two types: length and diameter of Merkus Pine yearly.
DOI: 10.5281/zenodo.14753882
title: Data & code for: Diversity in insect responses to landscape composition drives flower visitation across semi-natural grassland plants

description: This repository contains data and R-script files for the DrivenByPollinators project, using data from unmanipulated plots and pan traps collected in 2020 and 2021. The datasets are related to the article:

"Diversity in insect responses to landscape composition drives flower visitation across semi-natural grassland plants"https://doi.org/10.1016/j.agee.2025.109514

Structure

The "R" folder contains all necessary scripts for data preparation and analysis. The "Overview.R" script provides a summary of the datasets, scripts, and the recommended execution order. The scripts should be run within the R project "forZenodoData.Rproj", ensuring that no file paths need to be modified.

Dataset Overview

The following datasets are loaded in the data preparation scripts:



visits – is the visits and flower unit/mean size/cover data for visited plants.

flowers_agg – is the aggregated flower data.

WP1plots_landscvars – is the landscape variable data.

caughtflowervisitors – is the data on flower visitors caught in the field and identified in the museum.

flowercounts – is the complete flower data.

caughtpantrap – is the pan trap data.


Script Execution Order



Prepare flower visit data for analysis:'R/flowervisits_data_prep.R'

Analyze flower visit data by insect group and cluster:'R/analyses_1_visits.R'



Also generates clusters needed for species richness analysis in analyses_3_speciesrichness.R.



Prepare data on caught flower visitors (abundance and species richness):'R/caughtflowervisitors_data_prep.R'

Analyze abundance of caught individuals:'R/analyses_2_abundances.R' 

Analyze visitor species richness by cluster:'R/analyses_3_speciesrichness.R'

Prepare and filter pan trap data:'R/pantrap_data_prep.R'

Analyze visitor species richness from pan trap data:'R/analyses_4_pantrapspecpool.R'

Supplementary analyses:



Including honeybee visits: 'R/analyses_suppl_honeybee_visits.R' 

Of visits with different radii: 'R/analyses_suppl_visits_otherradii.R'



Generate network plot:'R/plot_InteractionNetworks.R'
DOI: 10.5281/zenodo.14753883
title: Data & code for: Diversity in insect responses to landscape composition drives flower visitation across semi-natural grassland plants

description: This repository contains data and R-script files for the DrivenByPollinators project, using data from unmanipulated plots and pan traps collected in 2020 and 2021. The datasets are related to the article:

"Diversity in insect responses to landscape composition drives flower visitation across semi-natural grassland plants"https://doi.org/10.1016/j.agee.2025.109514

Structure

The "R" folder contains all necessary scripts for data preparation and analysis. The "Overview.R" script provides a summary of the datasets, scripts, and the recommended execution order. The scripts should be run within the R project "forZenodoData.Rproj", ensuring that no file paths need to be modified.

Dataset Overview

The following datasets are loaded in the data preparation scripts:



visits – is the visits and flower unit/mean size/cover data for visited plants.

flowers_agg – is the aggregated flower data.

WP1plots_landscvars – is the landscape variable data.

caughtflowervisitors – is the data on flower visitors caught in the field and identified in the museum.

flowercounts – is the complete flower data.

caughtpantrap – is the pan trap data.


Script Execution Order



Prepare flower visit data for analysis:'R/flowervisits_data_prep.R'

Analyze flower visit data by insect group and cluster:'R/analyses_1_visits.R'



Also generates clusters needed for species richness analysis in analyses_3_speciesrichness.R.



Prepare data on caught flower visitors (abundance and species richness):'R/caughtflowervisitors_data_prep.R'

Analyze abundance of caught individuals:'R/analyses_2_abundances.R' 

Analyze visitor species richness by cluster:'R/analyses_3_speciesrichness.R'

Prepare and filter pan trap data:'R/pantrap_data_prep.R'

Analyze visitor species richness from pan trap data:'R/analyses_4_pantrapspecpool.R'

Supplementary analyses:



Including honeybee visits: 'R/analyses_suppl_honeybee_visits.R' 

Of visits with different radii: 'R/analyses_suppl_visits_otherradii.R'



Generate network plot:'R/plot_InteractionNetworks.R'
DOI: 10.15468/dl.k5pvps
title: Occurrence Download

description: A dataset containing 20807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (France, Netherlands, Belgium, Germany, Italy, Poland, Spain, Portugal, Greece, United Kingdom of Great Britain and Northern Ireland, Sweden, Finland, Denmark, Austria)",
 "TaxonKey is Pyrgus malvoides (Elwes & Edwards, 1897)"
 ]
}

 The dataset includes 20807 records from 517 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001184-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgabjs
title: Occurrence Download

description: A dataset containing 9359 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((86.51693 -13.0075,193.79704 -13.0075,193.79704 60.17214,86.51693 60.17214,86.51693 -13.0075))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chelonia mydas (Linnaeus, 1758)"
 ]
}

 The dataset includes 9359 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001185-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbd8j9
title: Occurrence Download

description: A dataset containing 1388 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Andrographis paniculata (Burm.fil.) Nees"
 ]
}

 The dataset includes 1388 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001186-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqardw
title: Occurrence Download

description: A dataset containing 510 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cheilocostus speciosus (J.Koenig) C.D.Specht"
 ]
}

 The dataset includes 510 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001187-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.su2qt8
title: Occurrence Download

description: A dataset containing 6590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((89.64519 -15.25247,191.1884 -15.25247,191.1884 58.10235,89.64519 58.10235,89.64519 -15.25247))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eretmochelys imbricata (Linnaeus, 1766)"
 ]
}

 The dataset includes 6590 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001188-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ec2p6a
title: Occurrence Download

description: A dataset containing 959 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citrus ×limon (L.) Burm.fil."
 ]
}

 The dataset includes 959 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001189-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm695m
title: Occurrence Download

description: A dataset containing 644 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Angola",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Civettictis civetta (Schreber, 1776)"
 ]
}

 The dataset includes 644 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001190-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjy2pt
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clinacanthus nutans (Burm.fil.) Lindau"
 ]
}

 The dataset includes 314 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001191-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xf4tqb
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epitrix tuberis Gentner, 1944"
 ]
}

 The dataset includes 71 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001192-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5b3br
title: Occurrence Download

description: A dataset containing 1083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabrotica undecimpunctata howardi Barber, 1947"
 ]
}

 The dataset includes 1083 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001193-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eabwmt
title: Occurrence Download

description: A dataset containing 1358 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epitrix cucumeris (Harris, 1851)"
 ]
}

 The dataset includes 1358 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001194-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8v44t2
title: Occurrence Download

description: A dataset containing 1535 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cratoxylum formosum (Jack) Benth. & Hook.fil. ex Dyer"
 ]
}

 The dataset includes 1535 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001195-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knmgyd
title: Occurrence Download

description: A dataset containing 33607 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Butterflies Australia"
 ]
}

 The dataset includes 33607 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001196-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufgjeu
title: Occurrence Download

description: A dataset containing 33607 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Butterflies Australia"
 ]
}

 The dataset includes 33607 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001197-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ddnta
title: Occurrence Download

description: A dataset containing 18871 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dicranopteris linearis (Burm.fil.) Underw."
 ]
}

 The dataset includes 18871 records from 314 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001198-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p62vhe
title: Occurrence Download

description: A dataset containing 1694 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diabrotica barberi R.F.Smith & Lawrence, 1967"
 ]
}

 The dataset includes 1694 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001199-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcjnw3
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Flemingia chappar Buch.-Ham. ex Benth."
 ]
}

 The dataset includes 119 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001200-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cuxhrd
title: Occurrence Download

description: A dataset containing 7889 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crioceris asparagi (Linnaeus, 1758)"
 ]
}

 The dataset includes 7889 records from 255 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001201-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17250073
title: Dataset for ICST 2022 paper "Evaluating Features for Machine Learning Detection of Order- and Non-Order-Dependent Flaky Tests"

description: Please refer to https://github.com/flake-it/flake16-framework for more information.
DOI: 10.5281/zenodo.17250074
title: Dataset for ICST 2022 paper "Evaluating Features for Machine Learning Detection of Order- and Non-Order-Dependent Flaky Tests"

description: Please refer to https://github.com/flake-it/flake16-framework for more information.