cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.36pn8/1
title: Simulation result files and mathematica notebook for analysis

description: Data and analysis files for paper "Evolution of equal division among unequal partners", published in Evolution, 2014, by Stéphane Debove, Nicolas Baumard and Jean-Baptiste André.Each folder contains the result files for multiple simulations with the same parameter values. These data files can be analyzed with the Mathematica notebook "analysis_data.nb" provided.If more details are needed on the data or the analysis, please contact the first author of the publication (find contact on personal website at http://stephanedebove.net ).
DOI: 10.5061/dryad.g7t27/1
title: 16S rRNA gene sequences alignment

description: 16S rRNA gene sequences alignment for nine Sphingobium genomes under study
DOI: 10.5061/dryad.g7t27/2
title: single copy genes final9genomes.fasta2

description: single copy genes alignment of nine Sphingobium genomes under study. The amino acid sequences of 28 universally present single copy genes i.e., dnaA, frr, gyrB, infB, mnmA, nusA, pheS, rplB, rplC, rplM, rplS, rpoA, rpsB, rpsC, rpsH, rpsI, rpsJ, rpsS, trmD, tef, ychF, alaS, rplE, uvrC, lepA, rplI, rplP and rplD were used.
DOI: 10.5061/dryad.g7t27/3
title: tetra co-relation value

description: tetra co-relation value among the Sphingobium strains pairs.
DOI: 10.5061/dryad.g7t27/4
title: Average Nucleotide Identity 9 GENOMES

description: Average Nucleotide Identity (ANI) pairwise comparison between nine Sphingobium spp.
DOI: 10.5061/dryad.36pn8/2
title: Netlogo code for the agent-based simulations
DOI: 10.5061/dryad.55137/1
title: S1

description: Primer and PCR information.
DOI: 10.5061/dryad.5s9r5/1
title: Grisanti et al. 2014 Cardiac Transcript Data

description: This file contains whole transcriptome data generated from the hearts of C57BL6/J mice that received infusion of the beta adrenergic receptor agonist isoproterenol (Iso; 3mg/kg/day) for 1 or 2 weeks.  Sheet 1 contains the 1 week Iso versus vehicle data and sheet 2 contains the 2 week Iso versus vehicle data.
DOI: 10.5061/dryad.b90r6/1
title: Physa_Lengths for growth trajectories

description: Includes length at ages 2, 7, 12, 17, 22, 27, 32, and 37 days post-hatching for snails reared in three temperature regimes (22, 25, or 28 C) along with family designations.
DOI: 10.5061/dryad.b90r6/2
title: Physa_age, size, fecundity at maturation

description: Includes age at maturation (days post hatching), length at maturation, and number of eggs laid in first brood of snails reared in three temperature regimes (22, 25, and 28 C)
DOI: 10.5061/dryad.b90r6/3
title: Physa_adult reproduction

description: Includes total number of eggs laid and number of egg masses per day by date for up to 12 broods after maturation.  Also includes length and wet mass of snails on each of those dates.  Snails are identified by rearing temperature treatment (22, 25, or 28 C) and family.
DOI: 10.5061/dryad.br506/1
title: SelectionResponseMR_data
DOI: 10.5061/dryad.55137/2
title: S2

description: GPS points and environmental variables used for SDMs.
DOI: 10.5061/dryad.55137/27
title: S3
DOI: 10.5061/dryad.55137/28
title: S4
DOI: 10.5061/dryad.8r082/1
title: Haplotype sequences list

description: Detailed list of haplotype DNA sequence variants found for the highly conserved regions for three short-fragments markers (UL18, UL22 and UL27) within the CFPHV genome.
DOI: 10.5061/dryad.8r082/2
title: Summarised haplotype and amino acid sequences list

description: Summarised list of haplotype DNA sequences and amino acid variants found for the highly conserved regions for three short-fragments markers (UL18, UL22 and UL27) within the CFPHV genome.
DOI: 10.5061/dryad.55137/10
title: gapd.Pla
DOI: 10.5061/dryad.55137/11
title: gapd.Pva
DOI: 10.5061/dryad.55137/5
title: S5

description: Additional SDM figures and results.
DOI: 10.5061/dryad.55137/6
title: cytb.Pid
DOI: 10.5061/dryad.55137/7
title: cytb.Pla
DOI: 10.5061/dryad.55137/8
title: cytb.Pva
DOI: 10.5061/dryad.55137/9
title: gapd.Pid
DOI: 10.5061/dryad.55137/12
title: hspa8.Pid
DOI: 10.5061/dryad.55137/13
title: hspa8.Pla
DOI: 10.5061/dryad.55137/14
title: hspa8.Pva
DOI: 10.5061/dryad.55137/15
title: its.Pid
DOI: 10.5061/dryad.55137/16
title: Pl1.Pid
DOI: 10.5061/dryad.55137/17
title: Pl14.Pid
DOI: 10.5061/dryad.55137/18
title: Pl14.Pla
DOI: 10.5061/dryad.55137/19
title: Pl96.Pid
DOI: 10.5061/dryad.55137/20
title: Pl96.Pla
DOI: 10.5061/dryad.55137/21
title: rag1.Pid
DOI: 10.5061/dryad.55137/22
title: rag1.Pla
DOI: 10.5061/dryad.55137/23
title: rag1.Pva
DOI: 10.5061/dryad.55137/24
title: rpl12.Pid
DOI: 10.5061/dryad.55137/25
title: rpl12.Pla
DOI: 10.5061/dryad.55137/26
title: rpl12.Pva
DOI: 10.5061/dryad.g180s/1
title: Supplementary Material for Bayesian Long-Branch Attraction Bias and Corrections
DOI: 10.5061/dryad.g180s/2
title: Software Documentation
DOI: 10.5061/dryad.g180s/3
title: Source Code for Software

description: This file contains source code for software to correct Bayesian posterior probabilities of topologies. This is Version 1.0, used for the Systematic Biology publication "Bayesian Long Branch Attraction Bias and Corrections". To access the most recent version of the software, please see
DOI: 10.5061/dryad.q2m38/1
title: pre-treatment_worms
DOI: 10.5061/dryad.q2m38/2
title: worms
DOI: 10.5061/dryad.q2m38/3
title: ifng
DOI: 10.5061/dryad.q2m38/4
title: neutrophils
DOI: 10.5061/dryad.q2m38/5
title: BTBrisk
DOI: 10.5061/dryad.q2m38/6
title: mortality
DOI: 10.5061/dryad.5845b/1
title: Online-Appendix2

description: Supplementary information text
DOI: 10.5061/dryad.5845b/2
title: Online-Appendix1

description: Supplementary information tables
DOI: 10.5061/dryad.5845b/3
title: Online-Appendix3

description: Supplementary information figures
DOI: 10.5061/dryad.g9089/1
title: Python tree-comparison programs

description: Tar gzip archive of Python programs for calculating and plotting tree comparison metrics.
DOI: 10.5061/dryad.g9089/2
title: C programs for simulating trees and DNA

description: C programs used to simulate evolutionary trees and simulate DNA data on those trees.  Also includes all needed parameter files and a script for a simple case.
DOI: 10.5061/dryad.g9089/3
title: Supplementary Figures

description: Supplementary figures for coalescent trees and for variations of the distance metrics in the main paper.
DOI: 10.5061/dryad.q2m38/7
title: mortality_BTBneg
DOI: 10.5061/dryad.36bv0/1
title: Casagrande et al. EsCaro

description: Data collected in the field
DOI: 10.5061/dryad.5tp41/1
title: Species differences in care

description: Data is an excel file containing information on lab experiments in which two species of burying beetle were reciprocally cross-fostered.
DOI: 10.5061/dryad.66v1c/1
title: Survivorship of 7977 trees in six size classes over 42 years

description: These data were collected from a permanent forest dynamics plot in rain forest at Davies Creek, 25 km southwest of Cairns in Queensland, Australia.  Large trees are mapped and tagged over the entire plot, smaller trees, saplings and seedlings are mapped and tagged along nested transects through the plot.  The dataset describes the fate of 7977 individuals that were alive on the plot in 1971, and whose fates were recorded through 13 mortality censuses to 2013.  Each row is data for a single stem.  Column 1 'SPEC' gives the species code for the stem (Latin binomials available from the authors upon request).  Column 2 'MAP' indicates the year in which the stem was first mapped.  The earliest map dates are 1963.  Column 3 'DEAD' indicates the survey year in which the stem was recorded dead.  A '0' indicates the stem was still alive at the last survey in 2013.  Column 4 'SCLASS' indicates the size class (1-6) to which the stem was assigned for the purposes of the randomization analyses described in the text.  Column 5 'HG' indicates whether stems in that size class were measured for height or girth on the map date.  Column 'Ht1' indicates height (decimal feet) at the map date.  Column 'Gr1' indicates girth (decimal inches) on the map date.
DOI: 10.5061/dryad.6bp0f/1
title: Raw gaze data as tab-separated values file.

description: Raw gazed data taken during the experiment. Exported using Tobii studio (Tobii, Sweden).
DOI: 10.5061/dryad.7h8q2/1
title: Garrick_etal_2014_ECE_Dryad_data
DOI: 10.5061/dryad.sp58m/1
title: FieldworkExtract

description: The GC data from Ophrys samples. SD refers to 300ng internal standard (C18 alkane). Population and species information were indicated in the Xu. at al. 2011 Evolution and Xu. et.al 2012 PloS Genet.
DOI: 10.5061/dryad.sp58m/2
title: Pollinator_attraction_all

description: Predicted Pollinator attraction. This data is presented as barplot as Figure 3.
DOI: 10.5061/dryad.sp58m/3
title: Alkene_composition_all

description: Predicted alkene compositions of different hypothetic genotypes. This figure was plotted as Figure 2.
DOI: 10.5061/dryad.sp58m/4
title: SAD_Two_locus_model_05.4

description: This is the R code used to produce the model presented in this manuscript. I have annotated the functions for major steps. However, if any questions related to this R script, please contact me: sxu@ice.mpg.de
DOI: 10.5061/dryad.n56gp/1
title: masterInsectData

description: age and health of each emerald ash borer larvae collected
DOI: 10.5061/dryad.n56gp/2
title: masterBoltBranchData

description: Data from each piece of ash sampled to obtain emerald ash borer larvae.
DOI: 10.5061/dryad.n56gp/3
title: allDataMerged

description: data from masterBoltBranchData and masterInsectData merged together in one file
DOI: 10.5061/dryad.n56gp/4
title: mergedLiveEabData

description: derived data set from masterBoltBranchData and masterInsectData. Summarizes total number of life and dead emerald ash borer in each stage, in each piece of wood that was sample where live insects were found.
DOI: 10.5061/dryad.n56gp/5
title: densityDependantMortalityAnalysisRevised

description: R code to perform the analysis of density dependant mortality
DOI: 10.5061/dryad.n56gp/6
title: figureFunctions

description: A set of R functions to make figures seen in the manuscript, plus some other diagnostic plots
DOI: 10.5061/dryad.n56gp/7
title: lifeTableAnalysis

description: R code to construct and analyse the emerald ash borer life table
DOI: 10.5061/dryad.204bc/1
title: Realised and non-realised mating events in moose

description: Potential mating events between adult male and female moose at Vega, Norway, and the associated F-value of the (potential) offspring. Annual values of population properties are also provided.
DOI: 10.5061/dryad.7qp63/1
title: trees and sequences for taste receptor genes
DOI: 10.5061/dryad.96cp4/1
title: Territoriality and mating success of males from separate genetic and environmental manipulations of condition

description: See ReadMe file.
DOI: 10.5061/dryad.d4758/1
title: Parapenaeus combined sequences from 5 genes

description: The raw data for Fig. 2 in the maunscript
DOI: 10.5061/dryad.d4758/2
title: COI sequences for all Parapenaeus species
DOI: 10.5061/dryad.f4nh9/2
title: MS2014 Green turtle Correlative model

description: data output used for paper
DOI: 10.5061/dryad.n4sc4/1
title: Ice Bucket Challenge analysis data
DOI: 10.5061/dryad.n56gp/8
title: survivalAnalysisFunctions

description: A set of R functions to perform the survival analysis
DOI: 10.5061/dryad.n56gp/9
title: survivalAnalysisRevised

description: R code to compute and analyze stage specific survivorship
DOI: 10.5061/dryad.1jv55/1
title: Sequence alignments

description: Fasta files containing alignments of all sequence loci.
DOI: 10.5061/dryad.1jv55/2
title: Microsatellite genotypes

description: Text files containing tab-delimited tables of microsatellite genotypes (one individual per row).
DOI: 10.5061/dryad.1jv55/3
title: Summary statistics for ABC analysis

description: Text files containing summary statistics used in the ABC analysis.
DOI: 10.5061/dryad.1jv55/4
title: Input files for ABC analysis

description: Input files used for ABC analysis with ABCtoolbox/fastsimcoal.
DOI: 10.5061/dryad.96cp4/2
title: Emergence counts and mass data for flies raised under high and low larval densities
DOI: 10.5061/dryad.96cp4/3
title: Sexual selection data (male body size, cuticular hydrocarbons and territorial/mating success)

description: See ReadMe file.
DOI: 10.5061/dryad.96cp4/4
title: Association between male territory defense and mating success

description: See ReadMe file.
DOI: 10.5061/dryad.96cp4/5
title: Results of territoriality assays

description: See ReadMe file.
DOI: 10.5061/dryad.1jv55/5
title: Scripts for ABC analysis

description: Custom-made scripts used in the ABC analysis with ABCtoolbox/fastsimcoal.
DOI: 10.5061/dryad.2g203/1
title: Location and codes

description: Table containing code, locations, species names and GenBank accession numbers
DOI: 10.5061/dryad.2g203/2
title: Sequence_alignments

description: Sequence alignments of Pogonus chalcesu mitochondrial NADP+-dependent isocitrate dehydrogenase (mtIdh), cytoplasmic NADP+-dependent isocitrate dehydrogenase (cytIdh), enolase, cytochrome oxidase subunit one (cox1), a mitochondrial region spanning the NADH subunit I (180 bp), the tRNA-Leu gene (64 bp) and the 16S rRNA gene (111 bp) and cytochrome b (cob; 468 bp)
DOI: 10.5061/dryad.2g203/3
title: Tree_files

description: Nexus files containing Bayasian Interference trees of mitochondrial NADP+-dependent isocitrate dehydrogenase, ctoplasmic NADP+-dependent Isocitrate dehydrogenase, enolase and concatenated alignement of cox1, nad1, cob. Used for phylogentic reconstruction and divergence time estimates.
DOI: 10.5061/dryad.86gm0/1
title: Data and R-scripts used to get results presented in the manuscript.

description: Data were simulated using CDpop. R-scripts were used in R 3.1.0.
DOI: 10.5061/dryad.jc0df/1
title: SBW Genotypes

description: This file contains the genotype data for the full set of 231 individuals over 28 microsatellite loci. Further details on loci and groupings can be found in the paper.
DOI: 10.5061/dryad.jc0df/2
title: MetaData_FOR_GenotypeData_1

description: Metadata for SBW genotypes that includes geographic location of each sample site.
DOI: 10.5061/dryad.k5786/1
title: dataset_gladieux_et_al_population_biology_fungal_invasions

description: Multilocus microsatellite genotypes with GPS data, for all Microbotryum lychnidis-dioicae samples
DOI: 10.5061/dryad.p4ct1/1
title: Appendix S1. MA and EMA results

description: Mechanical advantage (MA) and effective mechanical advantage (EMA) results from 96 Dapedium specimens with associated specimen numbers and any confirmed species identification.
DOI: 10.5061/dryad.p4ct1/2
title: Appendix S2. Actinopterygian MA data.

description: Mechanical advantage (MA) for 157 actinopterygian taxa, including six Dapedium species analyses in this study.
DOI: 10.5061/dryad.0mv56/1
title: Dnig trinity contigs
DOI: 10.5061/dryad.0mv56/2
title: Dnig annotated unigenes
DOI: 10.5061/dryad.0mv56/3
title: Dnig annotated proteins
DOI: 10.5061/dryad.0mv56/4
title: Dnig annotated transcripts v2
DOI: 10.5061/dryad.0mv56/5
title: Scripts

description: Shellscripts used in the bioinformatic pipeline
DOI: 10.5061/dryad.9fg6h/1
title: 08.25.14 - Dryad submission
DOI: 10.5061/dryad.j9m92/1
title: Field and Mesocosm Experimental Data

description: Data files on seagrass and covariate responses to macroalgal and nutrient additions in mesocosms and field experiments.
DOI: 10.5061/dryad.2s200/1
title: Annotation files for the Primula veris genome assembly

description: The included files were produced with the Maker2 annotation pipeline.
DOI: 10.5061/dryad.kr202/1
title: Dryad carnivore helminth prevalence

description: The prevalence of helminth parasites infecting wild carnivore species (a subset of the 2005 update of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/2
title: Dryad carnivore helminth PSR

description: The number of unique helminth parasites (parasite species richness (PSR)) infecting wild carnivore species (a subset of the 2005 update of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/3
title: Dryad ungulate helminth prevalence

description: The prevalence of helminth parasites infecting non-domesticated ungulate species (a subset of the 2005 update of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/4
title: Dryad ungulate helminth PSR

description: The number of unique helminth parasites (parasite species richness (PSR)) infecting non-domesticated species (a subset of the 2005 update of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/10
title: Dryad primate helminth prevalence

description: The prevalence of helminth parasites infecting wild primate species (a subset of Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/5
title: Dryad ungulate virus bacteria prevalence

description: The prevalence of microparasites (viruses and bacteria) infecting non-domesticated ungulate species (a subset of the 2005 update of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/6
title: Dryad ungulate virus bacteria PSR

description: The number of unique virus and bacteria microparasites  (parasite species richness (PSR)) infecting non-domesticated ungulate species (a subset of the 2005 update of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/7
title: Dryad D-index carnivores primates ungulates

description: Defensibility index calculated from day range length and home range area for carnivores, ungulates, and primates. Data collated from PanTHERIA and Carbone et al. 2005. See the manuscript for further details.
DOI: 10.5061/dryad.kr202/8
title: Dryad primate virus bacteria prevalence

description: The prevalence of microparasites (viruses and bacteria) infecting wild primate species (a subset of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/9
title: Dryad primate virus bacteria PSR

description: The number of unique virus and bacteria microparasites  (parasite species richness (PSR)) infecting wild primate species (a subset of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.kr202/11
title: Dryad primate helminth PSR

description: The number of unique helminth parasites  (parasite species richness (PSR)) infecting wild primate species (a subset of the Global Mammal Parasite Database).
DOI: 10.5061/dryad.pc17k/1
title: Dryad Han et al. EcoEvo Bd diversity data

description: Data collected from an experiment to examine dilution effects in larvae of three amphibian species experimentally inoculated with Batrachochytrium dendrobatidis across various species compositions. Data collected across species combinations (combo) for each focal species (species) include growth (mass, length), mortality (mean day to death), pathogen treatment (Bd or No Bd), mean log(genome equivalents) of Bd in host tissues (quantified using real time PCR), the mean proportion of tadpoles that died within experimental units, and mean mortality arcsin transformed for statistical analyses. Label represents an experimental unit containing 6 tadpoles in total at the start of the experiment.
DOI: 10.5061/dryad.jq285/1
title: Morphometric data

description: Morphometric data files for Alligator, Mus, and squamates
DOI: 10.5061/dryad.jk2m0/1
title: Sakaluk et al house wren pedigree and trait values

description: This file contains the pedigree on which the animal model was based (tab labeled 'Pedigree') and the trait values of nestlings that were analyzed (tab labeled 'Nestling trait values'.
DOI: 10.6084/m9.figshare.6272750.v1
title: Influence of Si Coating on Interfacial Microstructure of Laser Joining of Titanium and Aluminium Alloys

description: A common phenomenon in the dissimilar joints is the presence of brittle compounds in the joining interface region. The brittle phases can decrease by introduction of interlayers in the joining interface, such as silicon, that inhibits the formation of Al3Ti and AlTi3 phases in joining process between titanium and aluminium alloys. In the present work, the joining of titanium and aluminium alloys have been carried out using a Yb:fiber laser, considering the prior silicon film deposited on titanium alloy interface by DC magnetron sputtering. Butt joint conditions were maintained constant: laser average power, process speed and beam positioning along the interface joining toward aluminium alloy (1200 W, 3.0 m/min and 0.3 mm, respectively). Metallographic analyses were carried out on the cross-section joint by optical and electronic microscopies. When the melted aluminium alloy wet the solid-state titanium alloy, a more restrict compound layer was formed in the joining interface. EDS line scanning in the joining interface showed a reduction of compound layer thickness, considering the silicon as interlayer, reaching the mean value of 3 µm, i.e., up to five times thinner if compared to joining without silicon during the process.
DOI: 10.6084/m9.figshare.6272747
title: Gastos públicos com saúde: breve histórico, situação atual e perspectivas futuras

description: Abstract Despite the remarkable progress of the Brazilian public health system, nowadays better known by the acronym SUS (Sistema Único de Saúde), there is still a long way to go to ensure conditions to preserve the health of the Brazilian population. In this text, we unassumingly report the achievements and successful programs of SUS, the problems of financing and mismanagement, and the future challenges and principles that should guide actions to achieve more efficient health care in Brazil.
DOI: 10.6084/m9.figshare.6272747.v1
title: Gastos públicos com saúde: breve histórico, situação atual e perspectivas futuras

description: Abstract Despite the remarkable progress of the Brazilian public health system, nowadays better known by the acronym SUS (Sistema Único de Saúde), there is still a long way to go to ensure conditions to preserve the health of the Brazilian population. In this text, we unassumingly report the achievements and successful programs of SUS, the problems of financing and mismanagement, and the future challenges and principles that should guide actions to achieve more efficient health care in Brazil.
DOI: 10.6084/m9.figshare.6272744
title: Multi-objective optimization of a parallel manipulator for the design of a prosthetic arm using genetic algorithms

description: Abstract This paper presents a synthesis of a spherical parallel manipulator for a shoulder of a seven-degrees-of-freedom prosthetic human arm using a multi-objective optimization. Three design objectives are considered, namely the workspace, the dexterity, and the actuators torques. The parallel manipulator is modelled considering 13 design parameters in an optimization procedure. Due to the non-linearity of the design problem, genetic algorithms are implemented. The outcomes show that a suitable performance of the manipulator is achieved using the proposed optimization.
DOI: 10.6084/m9.figshare.6272744.v1
title: Multi-objective optimization of a parallel manipulator for the design of a prosthetic arm using genetic algorithms

description: Abstract This paper presents a synthesis of a spherical parallel manipulator for a shoulder of a seven-degrees-of-freedom prosthetic human arm using a multi-objective optimization. Three design objectives are considered, namely the workspace, the dexterity, and the actuators torques. The parallel manipulator is modelled considering 13 design parameters in an optimization procedure. Due to the non-linearity of the design problem, genetic algorithms are implemented. The outcomes show that a suitable performance of the manipulator is achieved using the proposed optimization.