cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9937859
title: Supplementary Material for: Trends in the Incidence and Mortality of Stroke in Matão, Brazil: The Matão Preventing Stroke (MAPS) Study

description: <b><i>Background:</i></b> Stroke population-based studies in the same setting comparing time trends of rates are a gold standard method to determine the primary prevention status of stroke. Twelve years ago, we measured the stroke incidence and mortality in Matão city, Southeast of Brazil. <b><i>Objective:</i></b> This second Matão stroke registry study aimed to determine the time trends in the incidence, mortality, case fatality, and functional status of patients with stroke. <b><i>Methods:</i></b> This was a prospective, population-based study known as the Matão Preventing Stroke (MAPS). We determined all incident stroke events that occurred between August 1, 2015, and July 31, 2016. Between the periods of November 1, 2003, to October 31, 2004, and August 1, 2015, to July 31, 2016, the rates were age adjusted to the Brazilian and world population. Functional status was measured by Barthel scale 1 year after the index event. <b><i>Results:</i></b> We registered 81 cases of incident stroke. Demographic and cardiovascular risk factors were similar in both periods. The mean age increased by 9%, from 65.2 (95% CI 62.6–67.8) to 71.0 (95% CI 68.1–73.8) years. Between 2003–2004 and 2015–2016, the age-adjusted incidence decreased by 39% (incidence rate ratio [IRR] 0.61; 95% CI 0.46–0.79) and mortality by 50% (IRR 0.50; 95% CI 0.31–0.94). The 1-year case fatality was 26%; approximately 56% of the patients were functionally independent, while 7% had a recurrent stroke. Compared with the results of our first registry study, these outcomes did not differ significantly. <b><i>Conclusion:</i></b> Our findings agree with those of previous studies, showing a decline in the incidence and mortality of stroke in Brazil. Improvements in local public health care might explain these declines.
DOI: 10.6084/m9.figshare.9937811
title: 30 InDel loci genotyped from Dong, Yi, Han, and Chuanqing in Southwest China

description: we genotyped the 30-InDel loci in 591 unrelated individuals from four Guizhou groups Chuanqing, Dong, Yi, and Han using the Investigator DIPplex kit.
DOI: 10.6084/m9.figshare.9937802
title: Isolated light chain deposition disease neuropathy in a patient with multiple myeloma

description: Isolated light chain deposition disease neuropathy in a patient with multiple myeloma
DOI: 10.6084/m9.figshare.9937802.v1
title: Isolated light chain deposition disease neuropathy in a patient with multiple myeloma

description: Isolated light chain deposition disease neuropathy in a patient with multiple myeloma
DOI: 10.6084/m9.figshare.9937676
title: MOESM7 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 7 Pasolli et al. quality report. This is a report of EvalCon and EvalG scores for high- and medium-quality genomes assembled in the Pasolli et al. study. Columns, in order, are Pasolli et al. genome name, CheckM completeness score, CheckM contamination score, PATRIC genome ID, Scientific name of organism, EvalG completeness score, EvalG contamination score, EvalCon coarse consistency score, EvalCon fine consistency score, and “good?” Genomes marked “good” in this table will meet the following criteria: (1) contamination ≤10%, (2) fine consistency ≥87%, and (3) completeness ≥80%, and (4) a single copy of pheS of appropriate length.
DOI: 10.6084/m9.figshare.9937676.v1
title: MOESM7 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 7 Pasolli et al. quality report. This is a report of EvalCon and EvalG scores for high- and medium-quality genomes assembled in the Pasolli et al. study. Columns, in order, are Pasolli et al. genome name, CheckM completeness score, CheckM contamination score, PATRIC genome ID, Scientific name of organism, EvalG completeness score, EvalG contamination score, EvalCon coarse consistency score, EvalCon fine consistency score, and “good?” Genomes marked “good” in this table will meet the following criteria: (1) contamination ≤10%, (2) fine consistency ≥87%, and (3) completeness ≥80%, and (4) a single copy of pheS of appropriate length.
DOI: 10.6084/m9.figshare.9937670
title: MOESM6 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 6 PATRIC quality report. This is a report of EvalCon and EvalG scores for all public genomes in PATRIC. Columns, in order, are: PATRIC genome ID, genome name, EvalCon fine consistency score, EvalG completeness score, EvalG contamination score, “Good,” and “Good Seed.” Genomes marked “good” meet the following criteria: (1) contamination ≤10%, (2) fine consistency ≥87%, and (3) completeness ≥80%. Genomes marked “good seed” have a single copy of the phenylalanine tRNA synthetase, alpha subunit (pheS) gene of appropriate length (209–405 amino acid residues for bacteria, 293-652 for archaea).
DOI: 10.6084/m9.figshare.9937661
title: MOESM4 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 4 EvalCon reliable role names. This file contains (column index, role name) tuples for the converged matrix. All indices start at zero. This is the subset of roles in all_roles.txt found to be reliably predictable under the random forest predictor.
DOI: 10.6084/m9.figshare.9937664
title: MOESM5 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 5 EvalCon converged multiplicity matrix. This is the multiplicity matrix with its columns pared down to the set of reliably predictable roles. Each line of this file represents a single genome, with tab-separated multiplicities for each role. Its rows are labeled in genome_names.txt and its columns are labeled in reliable_roles.txt.
DOI: 10.6084/m9.figshare.9937670.v1
title: MOESM6 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 6 PATRIC quality report. This is a report of EvalCon and EvalG scores for all public genomes in PATRIC. Columns, in order, are: PATRIC genome ID, genome name, EvalCon fine consistency score, EvalG completeness score, EvalG contamination score, “Good,” and “Good Seed.” Genomes marked “good” meet the following criteria: (1) contamination ≤10%, (2) fine consistency ≥87%, and (3) completeness ≥80%. Genomes marked “good seed” have a single copy of the phenylalanine tRNA synthetase, alpha subunit (pheS) gene of appropriate length (209–405 amino acid residues for bacteria, 293-652 for archaea).
DOI: 10.6084/m9.figshare.9937655
title: MOESM3 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 3 EvalCon training multiplicity matrix. This is the multiplicity matrix used to train the machine learning predictors for EvalCon. Each line of this file represents a single genome, with tab-separated multiplicities for each role. Its rows are labeled in genome_names.txt and its columns are labeled in all_roles.txt.
DOI: 10.6084/m9.figshare.9937661.v1
title: MOESM4 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 4 EvalCon reliable role names. This file contains (column index, role name) tuples for the converged matrix. All indices start at zero. This is the subset of roles in all_roles.txt found to be reliably predictable under the random forest predictor.
DOI: 10.6084/m9.figshare.9937664.v1
title: MOESM5 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 5 EvalCon converged multiplicity matrix. This is the multiplicity matrix with its columns pared down to the set of reliably predictable roles. Each line of this file represents a single genome, with tab-separated multiplicities for each role. Its rows are labeled in genome_names.txt and its columns are labeled in reliable_roles.txt.
DOI: 10.6084/m9.figshare.9937646
title: MOESM1 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 1 EvalCon genome names. This file contains (row index, genome name) tuples for both the training data matrix and the converged matrix.
DOI: 10.6084/m9.figshare.9937652
title: MOESM2 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 2 EvalCon training role names. This file contains (column index, role name) tuples for the training data matrix.
DOI: 10.6084/m9.figshare.9937655.v1
title: MOESM3 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 3 EvalCon training multiplicity matrix. This is the multiplicity matrix used to train the machine learning predictors for EvalCon. Each line of this file represents a single genome, with tab-separated multiplicities for each role. Its rows are labeled in genome_names.txt and its columns are labeled in all_roles.txt.
DOI: 10.6084/m9.figshare.9937652.v1
title: MOESM2 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 2 EvalCon training role names. This file contains (column index, role name) tuples for the training data matrix.
DOI: 10.6084/m9.figshare.9937646.v1
title: MOESM1 of A machine learning-based service for estimating quality of genomes using PATRIC

description: Additional file 1 EvalCon genome names. This file contains (row index, genome name) tuples for both the training data matrix and the converged matrix.
DOI: 10.6084/m9.figshare.9937115
title: Rawdata information

description: patients information
DOI: 10.6084/m9.figshare.9937109
title: ILRReviewProtestData

description: NFL Attendance, Protest Data, and Other market measures.
DOI: 10.6084/m9.figshare.9937115.v2
title: Rawdata information

description: patients information
DOI: 10.6084/m9.figshare.9937115.v1
title: Rawdata information

description: patients information
DOI: 10.6084/m9.figshare.9936986
title: PLOS ONE data set

description: sequence and qPCR data set described in the research
DOI: 10.6084/m9.figshare.9937001
title: Toxicity evaluation of nanocrystalline silver-impregnated coated dressing on the life cycle of worm Caenorhabditis elegans

description: There has been a growing demand for nanomaterials in recent years due to the production of cosmetics and pharmaceuticals, among other products. Even with this high demand and use, information on the toxicity of nanomaterials is still limited. Silver nanoparticles are used as a bactericide and are present in drugs, surgical materials, coated dressings, tissues and other products. Improper disposal of these items after use may cause toxicological effects on organisms in the environment. To evaluate the potential environmental hazard of nanosilver-coated dressings, the nematode <i>Caenorhabditis elegans</i> was chosen as a test organism. The assays were conducted in 24-well plates that contain four different sizes of coated dressing to obtain different concentrations. L1 and L4 <i>C. elegans</i> larval stages were exposed to these nanosilver concentrations. Dressing cutouts were arranged between two layers of agar for 3 days and <i>Escherichia coli</i> (OP 50 strain) was added as food source for the worms. After the exposure period, growth, reproduction, fertility, silver concentration in the medium and the concentration of reactive oxygen species (ROS) in the worms were evaluated. Scanning and transmission electron microscopy analyses were performed on the coated dressings, as well as analyses of zeta potential, ionic release and antibacterial power in two bacterial strains (<i>Pseudomonas aeruginosa</i> and <i>Staphylococcus aureus</i>)<i>.</i> It was verified the antibacterial power of the coated dressing, in both bacteria strains tested. Characterization of the coated dressing indicated heterogeneous nanoparticles, as well as distinct zeta potentials for the medium in water and saline medium (0.9 % NaCl). L1 larval worms exposed to nanosilver-coated dressing showed a high ROS concentration and reductions in growth, fertility and reproduction. Worms exposed to the coated dressing during the L4 stage showed almost no response. Overall, the obtained results indicate the potential environmental hazard of nanosilver-coated dressings.
DOI: 10.6084/m9.figshare.9937001.v1
title: Toxicity evaluation of nanocrystalline silver-impregnated coated dressing on the life cycle of worm Caenorhabditis elegans

description: There has been a growing demand for nanomaterials in recent years due to the production of cosmetics and pharmaceuticals, among other products. Even with this high demand and use, information on the toxicity of nanomaterials is still limited. Silver nanoparticles are used as a bactericide and are present in drugs, surgical materials, coated dressings, tissues and other products. Improper disposal of these items after use may cause toxicological effects on organisms in the environment. To evaluate the potential environmental hazard of nanosilver-coated dressings, the nematode <i>Caenorhabditis elegans</i> was chosen as a test organism. The assays were conducted in 24-well plates that contain four different sizes of coated dressing to obtain different concentrations. L1 and L4 <i>C. elegans</i> larval stages were exposed to these nanosilver concentrations. Dressing cutouts were arranged between two layers of agar for 3 days and <i>Escherichia coli</i> (OP 50 strain) was added as food source for the worms. After the exposure period, growth, reproduction, fertility, silver concentration in the medium and the concentration of reactive oxygen species (ROS) in the worms were evaluated. Scanning and transmission electron microscopy analyses were performed on the coated dressings, as well as analyses of zeta potential, ionic release and antibacterial power in two bacterial strains (<i>Pseudomonas aeruginosa</i> and <i>Staphylococcus aureus</i>)<i>.</i> It was verified the antibacterial power of the coated dressing, in both bacteria strains tested. Characterization of the coated dressing indicated heterogeneous nanoparticles, as well as distinct zeta potentials for the medium in water and saline medium (0.9 % NaCl). L1 larval worms exposed to nanosilver-coated dressing showed a high ROS concentration and reductions in growth, fertility and reproduction. Worms exposed to the coated dressing during the L4 stage showed almost no response. Overall, the obtained results indicate the potential environmental hazard of nanosilver-coated dressings.
DOI: 10.6084/m9.figshare.9936926
title: test

description: test
DOI: 10.6084/m9.figshare.9936629
title: Are we SAFE now? An evaluation of the Seatbelts Are for Everyone teen traffic safety program in Kansas

description: <b>Objective:</b> Teens represent the highest risk group for automobile accidents and are almost 3 times as likely to be killed in an accident. Seat belt use interventions are one way to address this issue, and a student-led program in Kansas called Seatbelts Are For Everyone (SAFE) has increased seat belt use for the past decade. An evaluation of SAFE enabled decisions to be made about program improvement and expansion. <b>Methods:</b> Mixed methods examined multiple aspects of the SAFE program, including summative and formative results. Researchers investigated the program through (1) a quasi-experimental observation to explore whether seat belt use at schools implementing SAFE for the first time was higher than at non-SAFE and (2) stakeholder interviews at SAFE schools. Each method examined whether SAFE programs accomplished goals set by program staff and how SAFE could better meet schools’ needs. <b>Results:</b> Summative results suggest that SAFE affects seat belt use. It is less influential on distracted driving but has a small but significant influence on that behavior. Stakeholders cited infrastructure and functional challenges affecting implementation, highlighting ways in which SAFE program staff could improve program compliance and outcomes. Formative recommendations included curriculum support, sharing among SAFE schools, and increasing student leadership opportunities. <b>Conclusions:</b> The evaluation of SAFE suggests that students are receptive to programs about seat belt and traffic safety. States may consider the recommendations for improvement of this program with other published evaluations and programs to determine how best to implement similar programs in their communities.
DOI: 10.6084/m9.figshare.9936926.v2
title: test

description: test
DOI: 10.6084/m9.figshare.9936629.v1
title: Are we SAFE now? An evaluation of the Seatbelts Are for Everyone teen traffic safety program in Kansas

description: <b>Objective:</b> Teens represent the highest risk group for automobile accidents and are almost 3 times as likely to be killed in an accident. Seat belt use interventions are one way to address this issue, and a student-led program in Kansas called Seatbelts Are For Everyone (SAFE) has increased seat belt use for the past decade. An evaluation of SAFE enabled decisions to be made about program improvement and expansion. <b>Methods:</b> Mixed methods examined multiple aspects of the SAFE program, including summative and formative results. Researchers investigated the program through (1) a quasi-experimental observation to explore whether seat belt use at schools implementing SAFE for the first time was higher than at non-SAFE and (2) stakeholder interviews at SAFE schools. Each method examined whether SAFE programs accomplished goals set by program staff and how SAFE could better meet schools’ needs. <b>Results:</b> Summative results suggest that SAFE affects seat belt use. It is less influential on distracted driving but has a small but significant influence on that behavior. Stakeholders cited infrastructure and functional challenges affecting implementation, highlighting ways in which SAFE program staff could improve program compliance and outcomes. Formative recommendations included curriculum support, sharing among SAFE schools, and increasing student leadership opportunities. <b>Conclusions:</b> The evaluation of SAFE suggests that students are receptive to programs about seat belt and traffic safety. States may consider the recommendations for improvement of this program with other published evaluations and programs to determine how best to implement similar programs in their communities.
DOI: 10.6084/m9.figshare.9936929
title: Assessment of cerebral autoregulation indices

description: This study used artificial data from 34 traumatic brain injury patients to study the relationship between various methodologies for cerebral autoregulation (CA) assessment: autoregulation index, ARI, mean flow index, Mx and frequency domain - based method transfer function analysis, TF. <br>
DOI: 10.23641/asha.9936374
title: Learning while playing (McGregor et al., 2019)

description: <b>Objectives: </b>The aim of this study was to determine whether college students build their vocabularies by playing a serious game that incorporates principles of learning and memory.<b>Design: </b>This study used a single-site, prospective, randomized trial with 2 branches: immediate and delayed treatment. Outcome measures were obtained after a 1-month intervention and, for the immediate group only, after a 1-month retention interval.<b>Setting: </b>College students from the University of Iowa were recruited via mass e-mail. The intervention took place in the participants’ homes; the testing took place in a university laboratory.<b>Participants:</b> Forty undergraduates (32 women, 8 men) who planned to take the Graduate Record Examinations (GRE; Educational Testing Service, 2018) within the year following the treatment participated in the study. Participants were allocated to 1 of the 2 treatment branches via biased coin randomization.<b>Intervention:</b> The treatment consisted of vocabulary training on Vocabulary.com for a minimum of 20 min (dose) 4 times per week (frequency) for 4 weeks (treatment duration), for a total cumulative treatment intensity of 320 min.<b>Outcome Measures: </b>The prespecified primary outcome measures of word learning were the number of words mastered during Vocabulary.com play and the percentage of mastered words accurately defined. The depth of information included in the definitions was a secondary outcome. The prespecified primary outcome measure of functional impact was change in the verbal GRE practice test scores from pre- to posttreatment. The examiners scoring the definitions were blind to treatment assignment. All other outcomes were measured automatically by the relevant computer program so blinding was moot.<b>Results: </b>The participants averaged 5.33 hr of play during the treatment interval and mastered 124 words. Amount of play and mastery were highly correlated. Accuracy of definitions was 55% or 59% (depending on treatment branch) after treatment and 55% 1 month later, an insignificant decline. The game itself did not result in GRE gains, but participants who mastered more words per minute of play had higher GRE scores than other participants.<b>Conclusion:</b> Vocabulary.com, an evidence-based game, showed promise as a way to build vocabulary knowledge, but at the intensity of treatment provided, it did not result in gains in high-stakes test performance.<b>Trial Registration:</b> This trial was not preregistered.<b><br></b><b>Supplemental Material S1. </b>Raw data including demographics, descriptive information about gaming and GRE preparation and outcomes associated with the randomized controlled trial.<br>McGregor, K. K., Marshall, B. A., Julian, S. K., & Oleson, J. (2019). Learning while palying: A randomized trial of serious games as a tool for word mastery. <i>Language, Speech, and Hearing Services in Schools, 50,</i> 596–608. https://doi.org/10.1044/2019_LSHSS-VOIA-18-0121<br><b>Publisher Note:</b> This article is part of the Forum: Vocabulary Across the School Grades.
DOI: 10.6084/m9.figshare.9936287
title: Biological use case #2 example datasets

description: Bladder tumors were stained using conventional 3,3’ diaminobenzidine (DAB; brown) staining. The .zip file is a model file that can be read into the workflow (see Workflow Annotations for instructions).<br>
DOI: 10.6084/m9.figshare.9936281
title: Biological use case #1 example datasets

description: Total Internal Reflection Fluorescence (TIRF) confocal microscopy of fluorescently-labeled vinculin.
DOI: 10.6084/m9.figshare.9936272
title: Responses to Gun Control Messages

description: We looked at 8 celebrities of various races and then attributed high and low controlling messages to them. Following the stimuli, respondents answered questions about source credibility and attitude change.
DOI: 10.6084/m9.figshare.9936287.v2
title: Biological use case #2 example datasets

description: Bladder tumors were stained using conventional 3,3’ diaminobenzidine (DAB; brown) staining. The .zip file is a model file that can be read into the workflow (see Workflow Annotations for instructions).<br>
DOI: 10.6084/m9.figshare.9936281.v2
title: Biological use case #1 example datasets

description: Total Internal Reflection Fluorescence (TIRF) confocal microscopy of fluorescently-labeled vinculin.
DOI: 10.6084/m9.figshare.9936287.v1
title: Biological use case #2 example datasets

description: Bladder tumors were stained using conventional 3,3’ diaminobenzidine (DAB; brown) staining.<br>
DOI: 10.6084/m9.figshare.9936281.v1
title: Biological use case #1 example datasets

description: Total Internal Reflection Fluorescence (TIRF) confocal microscopy of fluorescently-labeled vinculin.
DOI: 10.6084/m9.figshare.9934433
title: pairwise_files

description: Differential expression data for every pairwise comparison between tissue types within the dataset
DOI: 10.6084/m9.figshare.9934433.v1
title: pairwise_files

description: Differential expression data for every pairwise comparison between tissue types within the dataset