cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18594482
title: EROD-HR – A High Resolution Global Dust Erodibility Dataset

description: EROD-HR (High Resolution Erodibility) is a new global dataset designed to improve the representation of mineral dust emissions in atmospheric models. The dataset provides a spatially continuous, high-resolution (5 km) map of surface erodibility factors suitable for use in the GOCART dust emission scheme and other similar parameterizations.

This dataset was developed using updated global soil and land-surface information, enhanced spatial resolution, and a revised methodology aimed to overcome the limitations of the traditional EROD field used in WRF and other Earth System Models. The product is intended for research applications related to:



    Dust emission modeling

    Atmospheric composition simulations

    Air quality studies

    Climate and Earth system modeling
DOI: 10.34894/x8gi6h
title: Structural and functional implications of phase separation of membrane protein LacY in Escherichia coli

description: The dataset contains all optical and electron microscopy files in .czi, .lsm, .lif and .tif formats; raw .stk files of SMdM and PALM acquisitions; .csv output files from the TECAN plate reader used in the in the publication with the title: “Structural and functional implications of phase separation of membrane protein LacY in Escherichia coli “.&lt;br&gt;
Files are organized based on the figure they were used in. Molecular dynamic simulations input files, trajectories and code for the analysis are available on Zenodo: 10.5281/zenodo.17335657.
&lt;br&gt;
description: Liquid-liquid phase-separation (LLPS) controls protein activity and dynamically organizes (macro)molecules in living systems without the need for membrane-bound compartments. Biomolecular condensates of water-soluble proteins have extensively been studied, but little is known about LLPS of membrane proteins. In this work we induce in vivo condensation of lactose permease (LacY), a widely-studied model monomeric inner membrane protein in Escherichia coli, and evaluate how it affects LacY function. We fused LacY with engineered, condensate-forming protein PopTag. We observe major changes in the localization and mobility of LacY-Pop. Molecular dynamics simulations show how the PopTag domain drives the condensate-like association dynamics of LacY-Pop through hydrophobic sticker interactions. LacY-Pop preserves native-level transport activity and outperforms the non-condensed LacY under mild hyperosmotic stress (osmotic upshift). In osmotically stressed cells, membrane-bound biomolecular condensates also reduce deformation of the cytoplasmic membrane. Perturbation experiments suggest that membrane curvature drives the accumulation of LacY-Pop at the poles of E. coli. Co-condensation of LacY and β-galactosidase LacZ slightly reduces their activity and results in remarkable cellular reorganization of the proteins. Our research shows the localization, dynamics, and function of phase-separated membrane proteins in bacteria and highlights the potential of LLPS for engineering complex metabolic networks in vivo.
description: Please note: This is a large dataset (160 GB). Downloading the data has to be done in sections of approx. 9 GB each.
DOI: 10.15468/kdzsts
title: Published_records_of_Northwestern_Balkans_Leptodirini

description: The dataset comprises published records of the predominantly subterranean beetle tribe Leptodirini found in the Northwestern Balkans, mainly the Dinaric Karst and its vicinity.
DOI: 10.5281/zenodo.18605917
title: Supplementary Material. Characterization of bacteria isolated from Sumaterana crassiovis (endemic Indonesian frog) and their potential as biocontrol agents against chili anthracnose

description: The dataset comprises raw and processed data from a study investigating bacterial isolates collected from the skin of Sumaterana crassiovis, an endemic Indonesian frog species. The dataset includes isolation records, phenotypic characterizations, antifungal screening results, and in vivo disease suppression assays against Colletotrichum sp. (Col1) on chili, as well as disease severity index (DSI) calculations and statistical analyses.

These data facilitate the evaluation of frog skin–associated bacteria, specifically Aerococcus sp. strain ScV9, as potential biocontrol agents against chili anthracnose disease. The dataset is linked to the manuscript entitled: Aerococcus sp. strain ScV9 isolated from the native Indonesian frog Sumaterana crassiovis as a potent biocontrol agent against chili anthracnose disease.
DOI: 10.5281/zenodo.18605918
title: Supplementary Material. Characterization of bacteria isolated from Sumaterana crassiovis (endemic Indonesian frog) and their potential as biocontrol agents against chili anthracnose

description: The dataset comprises raw and processed data from a study investigating bacterial isolates collected from the skin of Sumaterana crassiovis, an endemic Indonesian frog species. The dataset includes isolation records, phenotypic characterizations, antifungal screening results, and in vivo disease suppression assays against Colletotrichum sp. (Col1) on chili, as well as disease severity index (DSI) calculations and statistical analyses.

These data facilitate the evaluation of frog skin–associated bacteria, specifically Aerococcus sp. strain ScV9, as potential biocontrol agents against chili anthracnose disease. The dataset is linked to the manuscript entitled: Aerococcus sp. strain ScV9 isolated from the native Indonesian frog Sumaterana crassiovis as a potent biocontrol agent against chili anthracnose disease.
DOI: 10.5281/zenodo.16737586
title: Datensatz zur Dissertation "Entwicklung eines formalen Beschreibungsmodells für das geisteswissenschaftliche Forschungsdatenmanagement - eine qualitative Untersuchung von Beratungsprotokollen zur bedarfsorientierten Beschreibung, Strukturierung und Modellierung des Managements von digitalen Forschungsdaten"

description: Der vorliegende Datensatz stellt die Basis von Patrick Hellings Inaugural-Dissertation mit dem Titel "Entwicklung eines formalen Beschreibungsmodells für das geisteswissenschaftliche Forschungsdatenmanagement - eine qualitative Untersuchung von Beratungsprotokollen zur bedarfsorientierten Beschreibung, Strukturierung und Modellierung des Managements von Forschungsdaten" dar.

Diese Dissertation wurde im August 2025 von der Philosophischen Fakultät der Universität zu Köln im Fach "Digital Humanities" angenommen.

In der Arbeit wurde mit Hilfe einer qualitativen Inhaltsanalyse, die auf ein Korpus bestehend aus 146 anonymisierten FDM-Beratungsprotokollen angewendet wurde, ein formales Beschreibungsmodell für das Management von Forschungsdaten entwickelt. Darüber hinaus wurde eine anonyme, quantitative Umfrage zur Erforschung der FDM-Versorgungslandschaft in Bezug auf FDM-Beratungsservices im deutschsprachigen Raum durchgeführt.

Der Datensatz besteht aus



zwei MaxQDA-Analysedateien

zwei Codebüchern

sechs Kodierungsdateien mit kodierten Textsegmenten

einer Datei mit Dokumenten-Profilen dem untersuchten Korpus bestehend aus 146 anonymisierten FDM-Beratungsprotokollen

zwei Dateien, die die Mappings zwischen entwickelten Kategorien und bestehenden Kategoriesystemen dokumentieren

einer Datei mit Ergebnisdaten der quantitativen Umfrage

einer Datei mit Analysedaten der quantitativen Umfrage

einer Datei mit der Struktur der quantitativen Umfrage


Für weitere Details, siehe das ReadMe.
DOI: 10.15468/dl.z7qbhy
title: Occurrence Download

description: A dataset containing 3665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Corythucha arcuata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is not null",
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3665 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007740-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16737585
title: Datensatz zur Dissertation "Entwicklung eines formalen Beschreibungsmodells für das geisteswissenschaftliche Forschungsdatenmanagement - eine qualitative Untersuchung von Beratungsprotokollen zur bedarfsorientierten Beschreibung, Strukturierung und Modellierung des Managements von digitalen Forschungsdaten"

description: Der vorliegende Datensatz stellt die Basis von Patrick Hellings Inaugural-Dissertation mit dem Titel "Entwicklung eines formalen Beschreibungsmodells für das geisteswissenschaftliche Forschungsdatenmanagement - eine qualitative Untersuchung von Beratungsprotokollen zur bedarfsorientierten Beschreibung, Strukturierung und Modellierung des Managements von Forschungsdaten" dar.

Diese Dissertation wurde im August 2025 von der Philosophischen Fakultät der Universität zu Köln im Fach "Digital Humanities" angenommen.

In der Arbeit wurde mit Hilfe einer qualitativen Inhaltsanalyse, die auf ein Korpus bestehend aus 146 anonymisierten FDM-Beratungsprotokollen angewendet wurde, ein formales Beschreibungsmodell für das Management von Forschungsdaten entwickelt. Darüber hinaus wurde eine anonyme, quantitative Umfrage zur Erforschung der FDM-Versorgungslandschaft in Bezug auf FDM-Beratungsservices im deutschsprachigen Raum durchgeführt.

Der Datensatz besteht aus



zwei MaxQDA-Analysedateien

zwei Codebüchern

sechs Kodierungsdateien mit kodierten Textsegmenten

einer Datei mit Dokumenten-Profilen dem untersuchten Korpus bestehend aus 146 anonymisierten FDM-Beratungsprotokollen

zwei Dateien, die die Mappings zwischen entwickelten Kategorien und bestehenden Kategoriesystemen dokumentieren

einer Datei mit Ergebnisdaten der quantitativen Umfrage

einer Datei mit Analysedaten der quantitativen Umfrage

einer Datei mit der Struktur der quantitativen Umfrage


Für weitere Details, siehe das ReadMe.
DOI: 10.15468/dl.qgdcah
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is ESP.8_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Taraxacum obovatum"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007741-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s69kjj
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hosta clausa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 71 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007742-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3patz
title: Occurrence Download

description: A dataset containing 1890 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Atriplex rosea"
 ]
}

 The dataset includes 1890 records from 213 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007743-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3rqhm
title: Occurrence Download

description: A dataset containing 30372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ixora",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 30372 records from 503 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007744-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18606254
title: Dataset of "Shape-Sensitive Fragmentation in Mass Spectrometry Informs Structural Differences of Thiolated Gold Nanoclusters"

description: This is a newly updated version of dataset associated with an unpublished article "Shape-Sensitive Fragmentation in Mass Spectrometry Informs Structural Differences of Thiolated Gold Nanoclusters". 

This newly updated dataset includes the following: cif files of the Au NCs (one .cif file currently not available due to publication reasons), MS raw data (Waters format), and data processing files for Figure 1-5 in the article.

Article DOI: xxx
DOI: 10.48425/0039040
title: T_insect_defoliators_density_altitudinal_gradients

description: Annual data on moth larval abundances from 3 localities in Troms. Each locality consist of 4 transects placed in an elevational gradient with 10-12 sampling sites along each transect. The dataset consists of an annual data file and a coordinate file with sampling site coordinates.
DOI: 10.5281/zenodo.18506978
title: Dataset of "Shape-Sensitive Fragmentation in Mass Spectrometry Informs Structural Differences of Thiolated Gold Nanoclusters"

description: This is a newly updated version of dataset associated with an unpublished article "Shape-Sensitive Fragmentation in Mass Spectrometry Informs Structural Differences of Thiolated Gold Nanoclusters". 

This newly updated dataset includes the following: cif files of the Au NCs (one .cif file currently not available due to publication reasons), MS raw data (Waters format), and data processing files for Figure 1-5 in the article.

Article DOI: xxx
DOI: 10.15468/dl.bhz4av
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyacinthella leucophaea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 89 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007747-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/hyzsbsgxcc
title: Optimized Eco-Friendly Bioflocculants: Nutrient and Cultivation Parameters for Wastewater Treatment

description: The production of bacterial bioflocculants represents a sustainable frontier in wastewater management. However, metabolic pathways responsible for these polymers are highly sensitive to their surroundings. This study demonstrates that by "fine-tuning" the microbial environment, we can transition from mediocre performance to near-total turbidity removal. Nutritional Synergy: Carbon and Nitrogen: This study found that sucrose and sucrose-glucose blends are the superior energy sources. This suggests that the metabolic pathways of the isolates are better equipped to handle disaccharides or specific hexose combinations, likely providing a steady flux of precursors for polymer synthesis. In contrast, pentoses like xylose may lead to slower growth or redirected metabolic energy, resulting in lower Flocculating Activity (FA%). Regarding nitrogen, a surprising trend emerged: inorganic sources (urea and ammonium chloride) outperformed complex organic ones like peptone. While organic sources provide ready-made amino acids, they can sometimes lead to excessive biomass production at the expense of secondary metabolite (bioflocculant) secretion. Simple nitrogen sources ensure that the carbon-to-nitrogen (C/N) ratio remains favorable for polymer excretion rather than just cellular replication. Physical and Environmental Refinement: The study highlights that "more" is not always "better" when it comes to cultivation parameters: Inoculum Size: Intermediate levels proved ideal. A low initial cell count delays the logarithmic growth phase, while an excessively high count leads to rapid nutrient depletion and oxygen competition before significant flocculant can be produced. pH and Temperature: The isolates showed a clear preference for neutral to slightly alkaline pH and mesophilic temperatures (typically 25 to 40 degree C). Extreme pH levels can denature the enzymes involved in polymer synthesis or alter the charge of the bioflocculant itself, rendering it ineffective. Similarly, temperature shifts affect membrane fluidity and metabolic rates; too cold, and the machinery stalls; too hot, and the proteins lose functionality. Agitation: Moderate shaking speeds are the "Goldilocks" zone. Agitation ensures oxygen transfer and nutrient distribution. However, static conditions lead to oxygen deprivation, while excessive speeds create high shear stress that can physically break the delicate molecular chains of the bioflocculant. Impact and Application: By synchronizing these variables, the researchers achieved near-complete turbidity removal using a kaolin clay assay. This is a significant benchmark, as it proves that biological alternatives can match the efficacy of synthetic polymers like polyacrylamide, which are often toxic and non-biodegradable. The "operational stability" of these optimized bioflocculants suggests they can withstand the rigors of real-world wastewater treatment, offering an eco-friendly path toward cleaner water without the chemical footprint.
DOI: 10.17632/hyzsbsgxcc.2
title: Optimized Eco-Friendly Bioflocculants: Nutrient and Cultivation Parameters for Wastewater Treatment

description: The production of bacterial bioflocculants represents a sustainable frontier in wastewater management. However, metabolic pathways responsible for these polymers are highly sensitive to their surroundings. This study demonstrates that by "fine-tuning" the microbial environment, we can transition from mediocre performance to near-total turbidity removal. Nutritional Synergy: Carbon and Nitrogen: This study found that sucrose and sucrose-glucose blends are the superior energy sources. This suggests that the metabolic pathways of the isolates are better equipped to handle disaccharides or specific hexose combinations, likely providing a steady flux of precursors for polymer synthesis. In contrast, pentoses like xylose may lead to slower growth or redirected metabolic energy, resulting in lower Flocculating Activity (FA%). Regarding nitrogen, a surprising trend emerged: inorganic sources (urea and ammonium chloride) outperformed complex organic ones like peptone. While organic sources provide ready-made amino acids, they can sometimes lead to excessive biomass production at the expense of secondary metabolite (bioflocculant) secretion. Simple nitrogen sources ensure that the carbon-to-nitrogen (C/N) ratio remains favorable for polymer excretion rather than just cellular replication. Physical and Environmental Refinement: The study highlights that "more" is not always "better" when it comes to cultivation parameters: Inoculum Size: Intermediate levels proved ideal. A low initial cell count delays the logarithmic growth phase, while an excessively high count leads to rapid nutrient depletion and oxygen competition before significant flocculant can be produced. pH and Temperature: The isolates showed a clear preference for neutral to slightly alkaline pH and mesophilic temperatures (typically 25 to 40 degree C). Extreme pH levels can denature the enzymes involved in polymer synthesis or alter the charge of the bioflocculant itself, rendering it ineffective. Similarly, temperature shifts affect membrane fluidity and metabolic rates; too cold, and the machinery stalls; too hot, and the proteins lose functionality. Agitation: Moderate shaking speeds are the "Goldilocks" zone. Agitation ensures oxygen transfer and nutrient distribution. However, static conditions lead to oxygen deprivation, while excessive speeds create high shear stress that can physically break the delicate molecular chains of the bioflocculant. Impact and Application: By synchronizing these variables, the researchers achieved near-complete turbidity removal using a kaolin clay assay. This is a significant benchmark, as it proves that biological alternatives can match the efficacy of synthetic polymers like polyacrylamide, which are often toxic and non-biodegradable. The "operational stability" of these optimized bioflocculants suggests they can withstand the rigors of real-world wastewater treatment, offering an eco-friendly path toward cleaner water without the chemical footprint.
DOI: 10.17632/482sf7g98t
title: Bright_and_Green

description: This is the code creating the results for the manuscript: "Bright and green? A global view on density and the trade-off between economic activity and urban greenness for over 1000 cities". 

Datasets are attached in long and wide format in the folder 03_data_input
To recreate the figures and tables, either run individual scripts in _Make_figures and _Make_tables or run the Main.R file. 
For further details, please read the README.md
DOI: 10.17632/482sf7g98t.2
title: Bright_and_Green

description: This is the code creating the results for the manuscript: "Bright and green? A global view on density and the trade-off between economic activity and urban greenness for over 1000 cities". 

Datasets are attached in long and wide format in the folder 03_data_input
To recreate the figures and tables, either run individual scripts in _Make_figures and _Make_tables or run the Main.R file. 
For further details, please read the README.md
DOI: 10.17632/kn6p7w38bh
title: Freeze-Thaw and Raindrop Splash Interactions: Effects on Soil Aggregate Turnover and Associated Organic Carbon Distribution

description: Soil Aggregate Turnover Processes and Organic Carbon Changes Under Freeze-Thaw Cycling and Rainfall Splash Effects
DOI: 10.5281/zenodo.18606375
title: CARINA_SOC_Data_field

description: The Excel file reports primary and secondary data used for the social assessment of the field phase performed in task 3.3 of the CARINA project. The dataset is specific for the countries involved in CARINA value chains.
DOI: 10.17632/kn6p7w38bh.1
title: Freeze-Thaw and Raindrop Splash Interactions: Effects on Soil Aggregate Turnover and Associated Organic Carbon Distribution

description: Soil Aggregate Turnover Processes and Organic Carbon Changes Under Freeze-Thaw Cycling and Rainfall Splash Effects
DOI: 10.5281/zenodo.18606374
title: CARINA_SOC_Data_field

description: The Excel file reports primary and secondary data used for the social assessment of the field phase performed in task 3.3 of the CARINA project. The dataset is specific for the countries involved in CARINA value chains.
DOI: 10.15468/dl.t27d2p
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 1900",
 "TaxonKey is Atriplex saccaria"
 ]
}

 The dataset includes 279 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007748-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/f4dvrkpxtr
title: Replication Folder for Does local happiness mitigate analysts’ optimistic bias

description: Replication Folder for Does local happiness mitigate analyst conflicts of interest
DOI: 10.17632/f4dvrkpxtr.4
title: Replication Folder for Does local happiness mitigate analysts’ optimistic bias

description: Replication Folder for Does local happiness mitigate analyst conflicts of interest