cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18858155.v2
title: Evaluation of the cvfreq: novel index for the degree of frequency modulation of each syllable using USVSEG

description: We developed a novel index for the degree of frequency modulation of each syllable, named the cvfreq. The cvfreq is a coefficient of variation for the frequency of each syllable. The new version (ver. 9, revision 2) of USVSEG we previously developed (Tachibana et al., 2020 PLOS ONE https://doi.org/10.1371/journal.pone.0228907), which is a detection and segmentation system for USVs, outputs the values of the cvfreq. Here, we uploaded the dataset and stats information as supplemental information for the review process.<br>[Files]usvseg09r2.m: program file of USVSEG (MATLA) used in this study<br>usvseg_prm.mat: setting file<br>cvfreqStatsSum.csv: dataset<br>cvfreq_eval.R: R scripts for stats<br>StatSum_sFigs2-3.pdf: stats summary (modified R Markdown documents) <br>
DOI: 10.6084/m9.figshare.19114325.v1
title: Supplementary Material for: Evaluation of the Autoimmunity and Preexisting Risky Conditions for Hypersensitivity Reactions to COVID-19 Vaccines

description: <b><i>Introduction:</i></b> The role of autoimmunity and other preexisting risky conditions in hypersensitivity reactions (HSRs) to COVID-19 vaccines seems unclear. The aim of the study was to investigate the autoimmunity and preexisting risky conditions in HSRs to COVID-19 vaccines. <b><i>Methods:</i></b> The patients aged ≥18 years with a history of HSR to CoronaVac or Pfizer-BioNTech COVID-19 vaccines within 24 h in 2 tertiary centers were assessed. The patients were divided according to the type of vaccine which they showed immediate-type (&lt;4 h) HSR to (group A1 for CoronaVac and group B1 for Pfizer-BioNTech). Equal number of subjects who did not show HSR to two doses of either CoronaVac or Pfizer-BioNTech was recruited into the study as control groups (group A2 for CoronaVac and group B2 for Pfizer-BioNTech). The autologous serum skin test (ASST) was performed on patient and control groups. Later, the demographic, clinical, and laboratory features were compared between groups. <b><i>Results:</i></b> A total number of 27 patients were included in the study. Subjects with chronic spontaneous urticaria (CSU) were more frequent in group B1 than in group B2 (<i>p</i>:0.041). In addition to CSU, the presence of HSRs to drugs was higher in group A1 than in A2 (both <i>p</i>:0.007). The presence of autoimmunity and autoimmune diseases, positivity of antithyroid peroxidase antibody, and ASST were less in group A2 than in A1 (<i>p</i>:0.015, <i>p</i>:0.048, <i>p</i>:0.048, and <i>p</i>:0.037). Additionally, COVID-19 infection history was less in group A2 than in A1 (<i>p</i>:0.037). <b><i>Discussion/Conclusion:</i></b> Type IIb autoimmunity seems to play a role in immediate type HSRs to the CoronaVac vaccine as previously shown in autoimmune CSU and multidrug hypersensitivity.
DOI: 10.17632/9t5zdgs3s2
title: A new ChEMBL dataset for FastTargetPred

description: A ChEMBL-v29 dataset was generated to be used with the ligand-based similarity search target prediction engine FastTargetPred (https://github.com/ludovicchaput/FastTargetPred). Using this new dataset, attempts to predict macromolecular targets for a published dataset of 160,000 tetrapeptides was performed.
DOI: 10.6084/m9.figshare.1187092.v1
title: Davis Instrumented Bicycle Corrupt Trial Log

description: This comma separated text file contains additional metadata for the trials collected in: Moore, J.K. "Human Control of a Bicycle", 2012. This metadata was collected from observations during the trials and from review of the videos of the trials. The columns are as follows: - runid: The integer value corresponding to the trial identification number. - corrupt: A boolean (TRUE) specifying if the data from the trial should be discarded. - warning: A boolean (TRUE) specifying if the data is questionable and should be carefully reviewed before using. - knee: A semi-colon separated list of integers (starts at 1) specifying the perturbation numbe in which rider's knees disengaged from the bicycle frame. - handlebar: A semi-colon separated list of integers (starts at 1) specifying the perturbation number in which the handlebars of the bicycle touched or collided with the treadmill handrails. - trailer: A semi-colon separated list of integers (starts at 1) specifying the perturbation number in which the trailer of the bicycle touched or collided with the treadmill side guards. - reason: A string specifying why the data was marked as it was in plain ole English.
DOI: 10.6084/m9.figshare.13546631.v1
title: Supplementary Material for: Chicken Second Branchial Arch Progenitor Cells Contribute to Heart Musculature in vitro and in vivo

description: In the past, the heart muscle was thought to originate from a single source of myocardial progenitor cells. More recently, however, an additional source of myocardial progenitors has been revealed to be the second heart field, and chicken embryos were important for establishing this concept. However, there have been few studies in chicken on how this field contributes to heart muscles in vitro. We have developed an ex vivo experimental system from chicken embryos between stages HH17–20 to investigate how mesodermal progenitors in the second branchial arch (BA2) differentiate into cardiac muscles. Using this method, we presented evidence that the progenitor cells within the BA2 arch differentiated into beating cardiomyocytes in vitro. The beating explant cells were positive for cardiac actin, Nkx2.5, and ventricular myosin heavy chain. In addition, we performed a time course for the expression of second heart field markers (Isl1 and Nkx2.5) in the BA2 from stage HH16 to stage HH21 using in situ hybridization. Accordingly, using EGFP-based cell labeling techniques and quail-chicken cell injection, we demonstrated that mesodermal cells from the BA2 contributed to the outflow tract and ventricular myocardium in vivo. Thus, our findings highlight the cardiogenic potential of chicken BA2 mesodermal cells in vitro and in vivo.
DOI: 10.6084/m9.figshare.1551979.v1
title: Horse Trackway

description: An area trampled by horse tracks, presumably 2-3 horses crossed the area, but not certain. Photos and 3D model included in Zip file <br>Notes: A classic example of when track information can appear as a series of 'holes' seemingly without belonging to obvious trackways.
DOI: 10.6084/m9.figshare.20006148.v1
title: Emotional Development of Gifted Students: Comparative Study About Overexcitabilities

description: Abstract The aim of this study was to compare gifted, with academic and artistic talent, and non-gifted students regarding overexcitability, as well as to investigate the perceptions of teachers from a specialized educational program for the gifted about their students’ emotional development. The study included 150 students and six teachers. As instruments, we used participants characterization questionnaires, an overexcitability scale and a semi-structured interview script. Data were analyzed using inferential statistics and content analysis. The results indicated significant differences between gifted and non-gifted students in the patterns of intellectual and imaginative over-excitability, as well as a tendency for teachers to emotionally characterize gifted students with an emphasis on psychological disorders and weaknesses. To invest in educational strategies that use information derived from overexcitability patterns as facilitating tools for the learning process of the gifted can contribute to increasing student engagement at school, keeping them motivated.
DOI: 10.6084/m9.figshare.24915063.v1
title: Source Data.xlsx

description: Source data sets for publication "<b>Fasting-mimicking diet causes hepatic and blood markers changes indicating reduced biological age and disease risk</b>"
DOI: 10.6084/m9.figshare.27190572.v1
title: Comparison of functional fitness according to frailty status in elderly females

description: Frailty is a dynamic clinical state of diminished functional reserve that increases an individual's vulnerability to developing negative health-related events such as disability and/or mortality when exposed to external stressors.
DOI: 10.6084/m9.figshare.28713036.v1
title: Supplementary Table 1: BN packages from Bayesian networks for network inference in biology

description: A non-exhaustive selection of software packages used for learning BN structures in biology.
DOI: 10.17632/db4wdy7cdf
title: Resized (224x224) COVID and Non-COVID X-Ray Images

description: This dataset is the resized version of several datasets from Mendeley and Kaggle. The dataset from Mendeley entitled "Extensive COVID-19 X-Ray and CT Chest Images Dataset" was published by El-Shafai and El-Samie, which was used as the Train Set.  Meanwhile, the dataset from Kaggle entitled "COVID19 with Pneumonia and Normal Chest Xray (PA) Dataset" was published by Asraf and used as the Validation Set and Test Set. This dataset has been prepared for machine learning and deep learning purposes. Please do check the sources of the said datasets with the link below.

This dataset contains the following:
-Train Set (COVID: 4044; Non-COVID: 5500; Total: 9544)
-Validation Set (COVID: 763; Non-COVID: 763; Total: 1526)
-Test Set (COVID: 762; Non-COVID: 762; Total: 1524)

Since this dataset is the modified (i.e., resized) version of the datasets stated above, please cite this dataset (see citation on the right side), including the other sources.
DOI: 10.6084/m9.figshare.8968004.v1
title: CONTROLLING INVASIVE PLANT SPECIES IN ECOLOGICAL RESTORATION: A GLOBAL REVIEW

description: Dataset of Weidlich et al 2020
DOI: 10.6084/m9.figshare.11317646.v1
title: Population Grid for China SSP5RCP8.5

description: Population Grid for China under SSP5RCP8.5 from 2010 to 2100
DOI: 10.6084/m9.figshare.25515346.v2
title: Supplementary Material for: Larger degree of renal function decline in CKD is a favorable factor for the attenuation of eGFR slope worsening by SGLT2 inhibitors: a retrospective observational study

description: Introduction: Sodium-glucose cotransporter 2 inhibitors (SGLT2Is) have beneficial effects on the renal function of chronic kidney disease (CKD) patients, although the types of patients suitable for this treatment remain unclear.
Methods: A retrospective observational study was conducted on CKD patients who were treated with SGLT2I at our department from 2020 to 2023. The estimated glomerular filtration rate (eGFR) just before treatment was defined as the baseline and the difference between pre-and post-treatment eGFR slopes were used to compare the improvement of renal function. Logistic regression analysis was used to evaluate the independent factors for its improvement.
Results: A total of 128 patients were analyzed (mean age: 67.2 years; number of women: 28 [22%]). The mean eGFR was 42.1 ml/min/1.73 m2, and urine protein was 0.66 g/gCr. The eGFR slopes of patients with an eGFR &lt; 30 ml/min/1.73 m2 were improved significantly after treatment (-0.28 to -0.14 ml/min/1.73 m2/month, P &lt; 0.001) but were worsened in patients with an eGFR ≥ 30 ml/min/1.73 m2. Logistic analysis for the improvement in eGFR slopes showed that women (odds ratio [OR], 5.63; 95% confidence interval [CI], 1.16 to 27.3; P = 0.03), use of mineral corticoid receptor antagonists (OR, 11.79; 95% CI, 1.05 to 132.67; P = 0.012) and rapid decline of eGFR before treatment (OR, 12.8 per ml/min/1.73 m2/month decrease in eGFR; 95% CI, 3.32 to 49.40; P &lt; 0.001) were significant independent variables.
Conclusion: SGLT2Is may have beneficial effects especially for rapid decliners of eGFR, including advanced CKD.
DOI: 10.6084/m9.figshare.24305245.v1
title: Erythrophleum_fordii_Data_file_15_Predicted genes - nucleotide sequences

description: Genome assembly of Erythrophleum fordii.
DOI: 10.6084/m9.figshare.3562710.v1
title: Supplement 1. The complete data set.

description: File List fertilization_treatments.csv (MD5: 89bc45540bf3305cb2ef152cc68eaa0f) root_abundance_and_morphological_traits.csv (MD5: 31d7fb5a0a3858148df72683d227b914) root_nutrients.csv (MD5: 168940dbbfac94021d6be522d4978e9a) mycorrhizal_colonization.csv (MD5: f83d44888e6ffd45b60544ae605873f1) Description fertilization_treatments.csv is a comma-separated text file containing the fertilization treatments of the Gigante experiment. Column definitions are: treatment is the fertilization treatment, where N = nitrogen, P = phosphorus and K = potassium. plot is the plot number associated with each treatment. root_abundance_and_morphological_traits.csv is a comma-separated text file containing the root abundance and morphological trait dataset. Column definitions are: plot is treatment plot. core is core sample number. size_class is root diameter size class, where 0 = 0–1 mm, 1 = 1–2 mm and 2 = 0–2 mm. biomass is root biomass in g/m2 length is root length in m/m2 t_den is root tissue density in g/cm3 srl is specific root length in cm/g avg_diam is average root diameter in mm. root_nutrients.csv is a comma-separated text file containing the nutrient content of root tissue samples. Column definitions are: plot is treatment plot size_class is root diameter size class, where 0 = 0–1 mm, 1 = 1–2 mm and 2 = 0–2 mm. N is root tissue nitrogen concentration (%). C is root tissue carbon concentration (%). P is root tissue phosphorus concentration (ppm). K is root tissue potassium concentration (ppm). mycorrhizal_colonization.csv is a comma-separated text file containing mycorrhizal colonization dataset. Column definitions are: plot is treatment plot. arb_per is colonization of arbuscules expressed as a percent of root length ves_per is colonization of vesicles expressed as a percent of root length hyp_per is colonization of hyphae expressed as a percent of root length tot_per is total colonization expressed as a percent of root length arb_len is colonization of arbuscules expressed as root length (cm). ves_len is colonization of vesicles expressed as root length (cm). hyp_len is colonization of hyphae expressed as root length (cm). tot_len is total colonization expressed as root length (cm).
DOI: 10.11583/dtu.20014127.v1
title: ITC 2019 competition reduced datasets

description: This is the reduced version of the International Timetabling Competition 2019 (ITC 2019) datasets. The datasets have been reduced by the methods developed for the winning algorithm of the ITC 2019. The files are in the same format as the original ITC 2019 datasets, making them easy to use. The reduction algorithm has been further improved; the resulting data are presented here: https://doi.org/10.11583/DTU.20014070
DOI: 10.6084/m9.figshare.7231292.v1
title: 3 Specific root length

description: Specific root length
DOI: 10.6084/m9.figshare.19314470.v1
title: Data file 1. Summary of sequencing sample and strategies in this study.docx

description: Summary of sequencing sample and strategies in this study.docx
DOI: 10.17632/wdw7b3z2dh
title: Square step balance test among school going children

description: FSST (four square step test) is a dynamic balance test which is mainly used to assess the capability of a person to step over compact object. The aim of this study is to find normative reference score of square step test among school going children. A cross sectional study was done among 64 school going students from August 2022 to April 2023. It was concluded that FSST is effective test to assess dynamic balance in children. 9-12 sec was taken by the students to complete this test.
DOI: 10.6084/m9.figshare.21967838.v1
title: Gut microbiota of Vancouver Island marmots

description: Conservation breeding programs include translocations of animals across breeding facilities, both <em>in </em>and <em>ex situ</em>, and to/from their natural habitat. Newly reintroduced Vancouver Island marmots originating from the captive breeding program are known to experience high winter mortality. This health concern may be linked to changes in gut microbiota, which can affect metabolic rate prior to hibernation. Furthermore, captivity is known to impact the overall abundance of host-derived substrate degraders in the mammalian gut needed for hibernation. In this study, we explored the diversity of bacterial communities in the gut of captive marmots during the entire active season, both kept in captivity at <em>in situ </em>and <em>ex situ </em>facilities, as well as free-ranging marmots during the summer period. Gut microbial diversity was higher in marmots held in <em>ex situ</em> facilities, outside of their habitat range, compared to captive marmots held within their habitat range, and in the wild, and differences in composition were also observed. In the entire active season, animals kept in the <em>ex situ </em>facility had increased abundance in sulfate producers and possible cross-feeders, while an increase in amino acid metabolism, associated to fiber-degraders of <em>in situ </em>and free-ranging marmots is potentially linked to diet variation between facilities. KEGG pathways indicated that hibernation and captive location altered metabolic functions of gut microbiota of <em>Marmota vancouverensis</em>. These results confirm the interest to transfer animals held at zoos to an <em>in situ </em>facility before relocation and expand our understanding of microbiota variation around hibernation in the context of conservation biology.
DOI: 10.6084/m9.figshare.14318306.v1
title: Protective Effect of Victory Onion (Allium victorialis L.) Extract on Reproductive System Injury in Male Rats

description: Abstract Aqueous and ethanol extracts of A. victorialis were obtained by reflux extraction. A model of kidney yang deficiency as established by injecting hydrocortisone into male Sprague-Dawley rats. The experimental groups (n=8 rats per group) consisted of blank group, kidney yang deficiency group, and Jingui Shenqi control group (oral administration of Jingui Shenqi herbal preparation). In the treated groups, A. victorialis aqueous or ethanol extract was applied at doses of 1000, 800, or 400 mg/kg. In the model group, kidney yang was associated with loss of appetite, increased drinking water consumption and urine output, and decreased range of activity. With a longer injection time, body weight slowly increased, the body temperature decreased, the response was slow, kyphosis was evident in the back of the bow, and body hair became sparse and lost luster in treated group.
DOI: 10.6084/m9.figshare.19865176.v5
title: Malaysian Low Income Drug Addict Wives: Family Impact, Coping and Mental Wellbeing

description: This data was used for an article published titled "Malaysian Low Income Drug Addict Wives: Family Impact, Coping and Mental Wellbeing"
DOI: 10.6084/m9.figshare.24599094.v1
title: Supplementary Material for: Early Net Ultrafiltration during Continuous Renal Replacement Therapy: Impact of Admission Diagnosis and Association with Mortality.

description: Introduction: Continuous Renal Replacement Therapy (CRRT) is common in the Intensive Care Unit (ICU) but a high Net ultrafiltration rate (UFNET) calculated with daily data may increase mortality. We aimed to study early UFNET practice using minute-by-minute CRRT machine recordings and to assess its association with admission diagnosis and mortality. Methods: We studied CRRT treatments in three adult ICUs over 7-years. We calculated early UFNET rates minute-by-minute and categorised UFNET into tertiles of mean UFNET in the first 72 hours and admission diagnosis. We applied Cox-proportional hazards modelling with censoring of patients who died within 72 hours. Results: We studied 1218 patients; 154,712 hours and 9,282,729 minutes of CRRT (5,702 circuits). Mean early UFNET was 1.52 (1.46 to 1.57) mL/kg/hr. Early UFNET tertiles were similar to previously reported values at 0.00-1.20 mL/kg/hr, 1.21 to 1.93mL/kg/hr and &gt;1.93mL/kg/hr. UFNET values were similar whether evaluated at 24 or 72 hours or for the entire duration of CRRT. There was, however, significant variation in UFNET practice by admission diagnosis: higher in respiratory diseases (pneumonia P=0.01, other P&lt;0.0001), and cardiovascular disease (P=0.005) but lower in cardiothoracic surgery (P=0.04), renal (P=0.0003) and toxicology-associated diagnoses (P=0.01). Higher UFNET was associated with an increased hazard of death, HR 1.24 (1.13 to 1.37), independent of admission diagnosis, weight, age, sex, presence of ESKD and severity of illness. Conclusion: Early UFNET practice reflects known tertiles but varies significantly by admission diagnosis. Higher early UFNET is independently associated with mortality. Impacts of UFNET on mortality may vary by admission diagnosis. Further work is required to elucidate the nature and mechanisms responsible for this association.
DOI: 10.6084/m9.figshare.3154240.v2
title: Benchmark instances for the personal planning problem

description: The instances are based on real-world information gathered in the course of a research project by the analysis of 259 online interviews and two focus groups each with 10 participants. This results in six instance groups (A to F) representing different types of schedule patterns. For each group five instances are generated. <br><br>A set of small instances is generated which has a planning horizon of 3 days (3DayInstances.zip) and a set of large instance with a planning horizon of a week is generated (WeeklyInstances.zip).<br><br>The detailed description of the content and format is given in each file.<br>
DOI: 10.6084/m9.figshare.21688049.v1
title: Plant–soil feedbacks predict tree succession in boreal forests

description: The dataset contains four excel files, one with the information on the samples, and the remaining three with the OTU and taxonomy data for fungal, bacterial and oomycete communities.
DOI: 10.6084/m9.figshare.28103690.v2
title: Data Extraction Files

description: A qualitative synthesis of research into the use of exemplars in the English for academic purposes context to develop student feedback literacy.
DOI: 10.6084/m9.figshare.7096391.v4
title: Case data the Letter

description: Two excels are for the IEEE 30-bus and IEEE 118-bus systems. They are used to demonstrate the proposed efficient method in fast probabilistic optimal power flow calculation. As for the actual 661-bus system, the data is not shared on the website due to its data privacy required by the power company. You can obtain this data after approved by the power company.
DOI: 10.6084/m9.figshare.23993748.v1
title: A Dynamic Social Network of Characters Appeared in the French Novel, "Les Liaisons Dangereuses"

description: Social networks for fictional characters offer valuable insights for quantitatively examining narrative elements. These networks highlight the importance, roles, and groupings of characters. This dataset showcases a social network of characters from the epistolary French novel, "Les Liaisons Dangereuses," penned by Pierre Choderlos de Laclos in 1782. The relationships between characters are gauged by the frequency of letter exchanges, resulting in an asymmetric, directed graph representation. While static social networks provide significant insights into literature, monitoring the dynamic shifts in character relationships can elucidate plot developments, such as rising tensions or emerging conflicts. Consequently, we've mapped the dynamic social network of these characters across four intervals corresponding to the novel's four chapters. Each interval captures interaction rates from the novel's outset to the conclusion of that specific chapter. Comparing these four intervals reveals the evolving dynamics of character relationships throughout the narrative.