cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tgbwfk
title: Occurrence Download

description: A dataset containing 40379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is one of (North America, South America)",
 "Country is Mexico",
 "TaxonKey is Rodentia"
 ]
}

 The dataset includes 40379 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016934-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjyawc
title: Occurrence Download

description: A dataset containing 100691 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "Country is United States of America",
 "Geometry POLYGON((-115.9589 42.82014,-112.57436 42.82014,-112.57436 45.71883,-115.9589 45.71883,-115.9589 42.82014))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 100691 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016936-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m98wgf
title: Occurrence Download

description: A dataset containing 184998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ophiomyia melandryi Meijere, 1924, Phomopsis silenes D.Hawksw. & Punith., Sclerophoma punctiformis (Desm.) Höhn., Pyrenopeziza lychnidis (Desm. ex Sacc.) Rehm, Peronospora melandrii Gäum., Microbotryum violaceum (Pers.) G.Deml & Oberw., Hadena confusa (Hufnagel, 1766), Caryocolum cauligenella (Schmid, 1863), Uromyces inaequialtus Lasch, Ramularia silenicola C.Massal., Cassida hemisphaerica Herbst, 1799, Uromyces behenis (DC.) Unger, Sideridis rivularis Fabricius, 1775, Microbotryum silenes-inflatae (DC. ex Liro) G.Deml & Oberw., Conisania luteago (Denis & Schiffermüller), 1775, Brachymeria vitripennis (Forster, 1859), Condylostylus sipho (Say, 1823), Condylostylus comatus (Loew, 1861), Cycloneda munda (Say, 1835), Eucosma giganteana (Riley, 1881), Microbotryum silybum Vánky & Berner, Ocnogyna boeticum Rambur, 1836, Ctenucha multifaria Walker, 1854, Agapanthia dahlii (Richter, 1820), Puccinia cruchetiana Mayor, Puccinia mariana Sacc., Atteva floridana (Neumoegen, 1891), Dasyscolia ciliata (Fabricius, 1787), Pteromalus grisselli, Harrizia mira Delucchi, 1962, Anthocharis euphenoides Staudinger, 1869, Entedon sylvestris Szelényi, 1981, Ceutorhynchus pallidactylus (T.Marsham, 1802), Ceutorhynchus pyrrhorhynchus (T.Marsham, 1802), Melanobaris laticollis (T.Marsham, 1802), Ceutorhynchus sulcicollis Stephens, 1829, Lasioglossum leucocomum (Lovell, 1908), Acrolepiopsis incertella Chambers, 1872, Laelia batoides (Plötz, 1880), Puccinia smyrnii Biv., Ectophasia leucoptera (Rondani, 1865), Diplodia henriquesii Thüm., Puccinia ljulinica Hinkova & Koeva, Sturnira oporaphilum (Tschudi, 1844), Aegyptobia cassiae Baker & Tuttle, 1964, Gratiana pallidula (Boheman, 1854), Pseudotorymus africanus (Crosby, 1909), Euzophera villora Felder & Rogenhofer, 1874, Symmetrischema striatella (Murtfeldt, 1900), Oenanthe leucura (Gmelin, 1789))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 184998 records from 1135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016922-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15025527
title: MetaCoOc pre-formatted input files

description: Pre-formatted files for use in MetaCoOc.

Key components of MetaCoOc are:



Community profiles (presence/absence or abundance) derived from Metagenomes (e.g. those generated by singleM and hosted in Sandpiper)

Metadata about the metagenome samples e.g. the metadata submitted in NCBI SRA metagenome submissions


Parsing NCBI SRA Metadata

We adapted the parsing workflow was adapted from public_sequencing_metadata_corrections. The process is detailed in the README.md of metacooc

Formatting Sandpiper Data

We downloaded the community profiles in Sandpiper from Zenodo

The community profiles were formatted into Ingredients classes using MetaCoOc. The pickles of these are saved here.

 



Changelog

version 1.1.0



Ingredients class updated: matrices transposed to be in line with commonly used orientation of taxa x samples; class updated to more efficiently filter, search and count.

globdb ingredients introduced

Biome distributions updated after more curation


version 1.0.1



Underlying architecture of the Ingredients class was updated and necessitates a fresh upload. Biome distribution data can also be accessed from the Ingredients class now


version 1.0.0



In-line with the update and release of Sandpiper1.0.0 - files in this repository were updated and versioning introduced
DOI: 10.5281/zenodo.18245268
title: MetaCoOc pre-formatted input files

description: Pre-formatted files for use in MetaCoOc.

Key components of MetaCoOc are:



Community profiles (presence/absence or abundance) derived from Metagenomes (e.g. those generated by singleM and hosted in Sandpiper)

Metadata about the metagenome samples e.g. the metadata submitted in NCBI SRA metagenome submissions


Parsing NCBI SRA Metadata

We adapted the parsing workflow was adapted from public_sequencing_metadata_corrections. The process is detailed in the README.md of metacooc

Formatting Sandpiper Data

We downloaded the community profiles in Sandpiper from Zenodo

The community profiles were formatted into Ingredients classes using MetaCoOc. The pickles of these are saved here.

 



Changelog

version 1.1.0



Ingredients class updated: matrices transposed to be in line with commonly used orientation of taxa x samples; class updated to more efficiently filter, search and count.

globdb ingredients introduced

Biome distributions updated after more curation


version 1.0.1



Underlying architecture of the Ingredients class was updated and necessitates a fresh upload. Biome distribution data can also be accessed from the Ingredients class now


version 1.0.0



In-line with the update and release of Sandpiper1.0.0 - files in this repository were updated and versioning introduced
DOI: 10.34894/5soktv
title: Bud burst data - NIOO/Animal Ecology

description: The stage of bud burst has been measured from 1988 onwards on several tree species in different areas across the Netherlands to record the phenology of the trees. For a detailed data description see README.
description: Data files have been updated after fixes and corrections and README was extended.
DOI: 10.15468/dl.qmna6v
title: Occurrence Download

description: A dataset containing 7866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sympetrum striolatum (Charpentier, 1840)",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 7866 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036505-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z666f2
title: Occurrence Download

description: A dataset containing 1572 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Macao, Hong Kong)",
 "TaxonKey is Larus fuscus Linnaeus, 1758"
 ]
}

 The dataset includes 1572 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282229-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvaejq
title: Occurrence Download

description: A dataset containing 2666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Zambia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coracias caudatus Linnaeus, 1766"
 ]
}

 The dataset includes 2666 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273786-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wyb4k7
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus kamtschaticus (Meinsh.) Yonek."
 ]
}

 The dataset includes 54 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002273-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uhz7j
title: Occurrence Download

description: A dataset containing 712454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 712454 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282251-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmuuqz
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blastomussa loyae Head, 1978"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282262-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3cj5h
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amblypygi",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273782-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fhm33p
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IND",
 "Geometry POLYGON((74.10315 12.13073,76.8426 12.13073,76.8426 15.09505,74.10315 15.09505,74.10315 12.13073))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coffea arabica L.",
 "Year 2000-2023"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273789-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gecua2
title: Occurrence Download

description: A dataset containing 673 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Macao, Hong Kong)",
 "TaxonKey is Onychoprion anaethetus (Scopoli, 1786)"
 ]
}

 The dataset includes 673 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282269-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmu8nt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mantophasmatodea",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273792-220831081235567/datasets/export for details.
DOI: 10.5281/zenodo.11527290
title: Raw Data for the Protocol: Antibody-Assisted Selective Isolation of Purkinje Cell Nuclei

description: Sun1/sfGFP+, Pcp2-Cre+ and Sun1/sfGFP+, Pcp2-Cre- cryosectioned cerebella immunostained for the Myc tag (files 3037, 3046), which is fused to the GFP protein, Calbindin (files 3038, 3047) and Hoechst (files 3036, 3045). 

 

Original uncropped images from western blot analysis of TOM20, Histone H3, and GAPDH.
DOI: 10.5281/zenodo.11549380
title: Raw Data for the Protocol: Antibody-Assisted Selective Isolation of Purkinje Cell Nuclei

description: Sun1/sfGFP+, Pcp2-Cre+ and Sun1/sfGFP+, Pcp2-Cre- cryosectioned cerebella immunostained for the Myc tag (files 3037, 3046), which is fused to the GFP protein, Calbindin (files 3038, 3047) and Hoechst (files 3036, 3045). 

 

Original uncropped images from western blot analysis of TOM20, Histone H3, and GAPDH.
DOI: 10.15468/dl.mmhm59
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inversodicraea digitata Hess"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005473-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qj7vac
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solifugae",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273784-220831081235567/datasets/export for details.
DOI: 10.15468/dl.nqqavj
title: Occurrence Download

description: A dataset containing 1205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Jasminum polyanthum Franch."
 ]
}

 The dataset includes 1205 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029932-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywmta9
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotoneaster rockii G.Klotz"
 ]
}

 The dataset includes 35 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273785-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpcu8w
title: Occurrence Download

description: A dataset containing 576066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hypericum perforatum L."
 ]
}

 The dataset includes 576066 records from 2784 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029927-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26096914
title: Supplementary Material

description: 34 samples were collected from major roads around typical industrial enterprises in Qingshan District, Wuhan city to analyze the seasonal distribution, bioaccessibility, and human health risks of heavy metals (Cadmium (Cd), Nickel (Ni), Arsenic (As), Lead (Pb), Zinc (Zn), Cuprum (Cu), and Chromium (Cr)) in road dust from a typical industrial district, middle China. <br>
DOI: 10.6084/m9.figshare.26096914.v2
title: Supplementary Material

description: 34 samples were collected from major roads around typical industrial enterprises in Qingshan District, Wuhan city to analyze the seasonal distribution, bioaccessibility, and human health risks of heavy metals (Cadmium (Cd), Nickel (Ni), Arsenic (As), Lead (Pb), Zinc (Zn), Cuprum (Cu), and Chromium (Cr)) in road dust from a typical industrial district, middle China. <br>
DOI: 10.6084/m9.figshare.26096914.v3
title: Supplementary Material

description: 34 samples were collected from major roads around typical industrial enterprises in Qingshan District, Wuhan city to analyze the seasonal distribution, bioaccessibility, and human health risks of heavy metals (Cadmium (Cd), Nickel (Ni), Arsenic (As), Lead (Pb), Zinc (Zn), Cuprum (Cu), and Chromium (Cr)) in road dust from a typical industrial district, middle China. <br>
DOI: 10.15468/dl.bvh278
title: Occurrence Download

description: A dataset containing 53685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, Svalbard and Jan Mayen, Portugal, Spain, France, Germany, Belgium, Netherlands, Denmark, Estonia, Latvia, Lithuania, Italy, Greece, Cyprus, Türkiye, Russian Federation, Ukraine, Romania, Bulgaria, Albania, Croatia, Austria, Slovakia, Poland)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Triglochin palustris L."
 ]
}

 The dataset includes 53685 records from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092672-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nkkkk
title: Occurrence Download

description: A dataset containing 653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Megascolia maculata flavifrons (Fabricius, 1775)"
 ]
}

 The dataset includes 653 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092699-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8782533
title: World_billion_2024
DOI: 10.15468/dl.kj98ck
title: Occurrence Download

description: A dataset containing 2441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Commelina tuberosa L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2441 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0092698-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/00345
title: Chandra X-ray Observatory ObsId 00345

description: STUDIES OF RADIO JETS AND THE NARROW LINE REGIONS
DOI: 10.25574/00392
title: Chandra X-ray Observatory ObsId 00392

description: LOW-LUMINOSITY ACTIVE GALACTIC NUCLEI IN NEARBY GALAXIES
DOI: 10.25574/00393
title: Chandra X-ray Observatory ObsId 00393

description: LOW-LUMINOSITY ACTIVE GALACTIC NUCLEI IN NEARBY GALAXIES
DOI: 10.5281/zenodo.12530616
title: Düsseldorf Münster Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope): https://kalliope-verbund.info/DE-611-BF-70963[Funktion: Im Findbuch anzeigen]Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.12530136
title: Dataset of "Impact of Carbon Corrosion and Denitrogenation on the Deactivation of Fe-N-C Catalysts in Alkaline Media"

description: In this work, we use a gas diffusion electrode half-cell coupled with inductively coupled plasma mass spectrometry (GDE-ICP-MS) to quantify the Fe dissolution rates in the potential range between 0.93 and 1.5 VRHE. It is shown that Fe dissolution accelerates with increased anodic potential and temperature while it is independent on the presence/absence of O2. The onset potential of Fe dissolution at room temperature agrees with the reported onset potentials of carbon corrosion and denitrogenation, C and N being oxidized to gaseous COx and NOx species, respectively. This correlation supports that the electrochemical oxidation of the N-C matrix triggers the observed catalyst demetallation in these conditions. Using a set of ex situ physicochemical characterization techniques, including spectroscopy and microscopy, the various degrees of degradation under three sets of experimental conditions of interest (O2-RT, O2-HT, and Ar-HT, where RT = 22℃ and HT = 62℃) are rationalized. Combining the GDE-ICP-MS technique and post-mortem analyses, this work provides novel insights into the degradation pathways of various Fe, N, and C species during start-stop events, which may inspire the next generation of durable Fe-N-C catalysts for anion exchange membrane fuel cells.
DOI: 10.5281/zenodo.12183525
title: Complete classification of six-dimensional iso-edge domains

description: This dataset contains the complete list of the 55.083.357  iso-edge domains in dimension 6. The data is stored in a netCDF-4 data file. For each iso-edge domain it contains 63 canonicalized 6-dimensional coordinates that represent the iso-edge domain.Furthermore, for each iso-edge domain it contains the number of neighbouring iso-edge domains.

The netCDF dimensions and variables are as follows:

netcdf ctype_dim6 {
dimensions:
	number_ctype = UNLIMITED ; // (55083357 currently)
	n = 6 ;
	n_vect = 63 ;
variables:
	int Ctype(number_ctype, n_vect, n) ;
		Ctype:long_name = "Ctype canonicalized coordinates" ;
		Ctype:units = "nondimensional" ;
	int nb_adjacent(number_ctype) ;
		nb_adjacent:long_name = "number of adjacent Ctypes" ;
		nb_adjacent:units = "nondimensional" ;
}

The data can be extracted to a human readable format using for example the ncdump utility.
DOI: 10.5281/zenodo.12183526
title: Complete classification of six-dimensional iso-edge domains

description: This dataset contains the complete list of the 55.083.357  iso-edge domains in dimension 6. The data is stored in a netCDF-4 data file. For each iso-edge domain it contains 63 canonicalized 6-dimensional coordinates that represent the iso-edge domain.Furthermore, for each iso-edge domain it contains the number of neighbouring iso-edge domains.

The netCDF dimensions and variables are as follows:

netcdf ctype_dim6 {
dimensions:
	number_ctype = UNLIMITED ; // (55083357 currently)
	n = 6 ;
	n_vect = 63 ;
variables:
	int Ctype(number_ctype, n_vect, n) ;
		Ctype:long_name = "Ctype canonicalized coordinates" ;
		Ctype:units = "nondimensional" ;
	int nb_adjacent(number_ctype) ;
		nb_adjacent:long_name = "number of adjacent Ctypes" ;
		nb_adjacent:units = "nondimensional" ;
}

The data can be extracted to a human readable format using for example the ncdump utility.
DOI: 10.5281/zenodo.12517265
title: Bike Trajectory Mapping Dataset
DOI: 10.5281/zenodo.12517266
title: Bike Trajectory Mapping Dataset