cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h35p4/1
title: Raw Protein RPAs

description: The relative peak area (RPA), i.e. peak area value of the 23 different activity levels of the 7 signal transducers after normalization to the HSP70 level analyzed in parallel in each sample (columns 2-24). This file contains one sample per row and one protein per column with the sample name in the first column and the protein name in the first row. Columns 25-27 contain the result of the mutation analysis of KRAS and BRAF. One in column 25 (MutationKRAS) indicate that KRAS is mutated in the sample, one in column 26 (MutationBRAF) indicates that BRAF is mutated, while one in column 27 (Wildtype) indicate that neither KRAS nor BRAF is mutated. A one in the binary variables in column 28-31 indicate the classification of each sample as normal mucosa, colorectal cancer (CRC) stage II, CRC stage IV, or metastasis. NaN is used to indicate that no measurement was done.
DOI: 10.5061/dryad.j8s0v/1
title: Information for the populations and crosses used in this study.

description: Information for the populations and crosses used in this study.
DOI: 10.5061/dryad.k86v1/1
title: Meng_Oremus_Gaines_replication

description: This zip file contains all code and data to replicate results in Meng, Oremus, Gaines, PLOS ONE, 2016
DOI: 10.5061/dryad.kc097/3
title: Separate trees for each host, protein and subtype

description: Phylogenetic trees in Newick format. For each protein there is a separate tree which has sequences from a single host and a single subtype. The nodes in the tree are marked with the top 5 rules for the respective protein.The nodes of the trees are accession IDs of the sequences used in the creation of the phylogenies followed by the rules numbers that are supported by the sequence. The sequences used were obtained from NCBI database. The trees were created using FastTree 2.1.8.
DOI: 10.5061/dryad.kc097/4
title: Combined phylogenetic trees for each protein

description: Phylogenetic trees in Newick format. For each protein there is a tree which has sequences from both the avian and human hosts and from from both H1N1 and H3N2 subtypes. The nodes are the accession IDs of the sequences followed by the host and subtype information. The original sequences were taken from NCBI database. The trees were created using FastTree 2.1.8.
DOI: 10.5061/dryad.m0763/1
title: Grampus_griseus_pulsed_sound_discrimination

description: We provide information on (1) the inter-click intervals of clicks recorded on fifteen tagged Risso's dolphins (Grampus griseus) echolocating in the wild and (2) model parameters used to discriminate between pulsed sounds used for echolocation-based foraging and communication in this species.
DOI: 10.5061/dryad.r720b/1
title: Exp1_Kinematics_Data

description: Joint angles of lower limb for 7 subjects in Experiment 1
DOI: 10.5061/dryad.r720b/2
title: Exp1_Angle_Torque_EMG_Data

description: Footplate angle, foolplate torque and EMG data
DOI: 10.5061/dryad.r720b/3
title: Exp2_Angle_Torque_EMG_Data

description: Footplate angle, footplate torque and EMG data
DOI: 10.5061/dryad.tj4t0/1
title: Lucid identification key

description: The zip file contains all the Lucid data files. The electronic identification key for the species of ruficornis-group was prepared in Lucid 3.5 Builder (http://www.lucidcentral.org/). If the licence for Lucid 3.5 is lacking, the free version of Lucid 3.3 can be used to run the key. Only species of the ruficornis group are included in the key, but there are additional characters that do not vary within the group, but which can be used to exclude other Pristiphora species. In case of ambiguities or polymorphisms in character states, we conservatively coded these to multiple states. The key contains 37 morphological features with 94 character states and 43 entities (species and groups, 20 for males and 23 for females). The first choice given in the key is between female and male, one of which has to be chosen to see all other characters. After that, characters can be chosen freely or one can use ‘Best’ and ‘Next Best’ tools in Lucid that suggests the most efficient sequence of characters for identification.
DOI: 10.5061/dryad.tj4t0/2
title: Alignment files and trees

description: The zip file contains the alignment files of COI and TPI genes, which were used to reconstruct phylogeny using PhyML 3.0.1, and the resulting tree and other output files.
DOI: 10.5061/dryad.tj4t0/3
title: Studied specimens

description: The excel file includes collection data of the studied specimens and GenBank accession numbers.
DOI: 10.17632/84k7zdvrvx.1
title: Effect of Ozone Pretreatment on the Physical and Mechanical Properties of Particleboard Panels made from Bagasse

description: The main objective of this study was to investigate the applied properties of particleboard panels made from bagasse, which were either treated or not treated with gaseous ozone (O3). Variable parameters were ozone exposure time (1-3 min) at 9 ppm and storage period (1-5 months). Other parameters such as resin content (12 wt%), hardener content (1 wt%), type of hardener (NH4Cl), press closing time (5 mm/s), board density (0.70 g/cm3), and press pressure (30 kg/m2) were held constant. The experimental panels were tested for their mechanical properties including modulus of elasticity (MOE), modulus of rupture (MOR); and internal bonding strength (IBS) and physical properties in terms of water absorption (WA) and thickness swelling (TS) according to the procedures defined by EN standards. Overall, results showed that all panels made from treated bagasse exceeded the EN standards for MOE, MOR, and IBS. However, WA and TS values decreased after ozone pretreatment compared to the un-treated control panels. Application of Duncan’s Multiple Range Test for the mean values of the results showed that the effects of both variables, except their interactions, on the mechanical and physical properties were highly significant (p≤0.01%). All the mechanical properties of the panels decreased when the treatment duration increased from 1 to 5 months.
DOI: 10.5061/dryad.22bc3/1
title: Supplement S2 SNP Data

description: Genotypic and mitotype data for all individuals analyzed in our publication.
DOI: 10.5061/dryad.55174/2
title: Pogona morphology

description: Excel file morphology
DOI: 10.5061/dryad.5c84j/10
title: Short-term Climate Variabiliy Models - directory 4 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Caracara, Cardellina, Cardinalis, Carpodacus, Cathartes, Catharus, Catherpes, Certhia, Chaetura, Chamaea, Charadrius, Chlidonias, Chloroceryle, and Chondestes.
DOI: 10.5061/dryad.5c84j/11
title: Short-term Climate Variabiliy Models - directory 5 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Chordeiles, Cinclus, Circus, Cistothorus, Coccothraustes, Coccyzus, Colaptes, Colinus, Columbina, Contopus, Coragyps, Corvus, and Cyanocitta.
DOI: 10.5061/dryad.5c84j/2
title: Independent Data Validation

description: Data for independent validation with BBS data
DOI: 10.5061/dryad.5c84j/3
title: Long-Term Climate Average Models 1

description: First half of data for species distribution models for long-term climate average models
DOI: 10.5061/dryad.5c84j/4
title: Long-Term Climate Average Models 2

description: Second half of data for species distribution models for long-term climate average models
DOI: 10.5061/dryad.5c84j/6
title: weather.bkgd.csv

description: Target group background data for use in all species distribution models.
DOI: 10.5061/dryad.5c84j/7
title: Short-term Climate Variabiliy Models - directory 1 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Accipiter, Actitis, Aechmophorus, Aegolius, Aeronautes, Agelaius, Aix, Amazilia, Ammodramus, Amphispiza, and Anas.
DOI: 10.5061/dryad.5c84j/8
title: Short-term Climate Variabiliy Models - directory 2 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Anhinga, Aphelocoma, Aquila, Aramus, Archilochus, Ardea, Asio, Athene, Auriparus, Aythya, Baeolophus, Bombycilla, and Bonasa.
DOI: 10.5061/dryad.5c84j/9
title: Short-term Climate Variabiliy Models - directory 3 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Botaurus, Branta, Bubo, Buteo, Butorides, Calamospiza, Calcarius, Callipepla, Calypte, Campylorhynchus, and Caprimulgus.
DOI: 10.5061/dryad.785cv/1
title: Black spruce standardized chronologies

description: The file contains the standardized growth indices (chronologies) for 378 black spruce populations across Quebec, Canada, for the period 1960-2004. Each chronology in identified by its lat-lon coordinates. In addition, the file displays the soil type (deposit, texture, drainage) associated with each chronology.
DOI: 10.5061/dryad.785cv/2
title: Historical monthly climate

description: This file contains the average monthly temperature, precipitation and soil moisture index, identified by their lon-lat coordinates, corresponding to the black spruce chronologies (1960-2004).
DOI: 10.5061/dryad.785cv/3
title: Baseline and future climate simulations

description: Spatially-explicit climate data (Shape files) from the NEX-GDDP dataset, prepared by the Climate Analytics Group and NASA Ames Research Center using the NASA Earth Exchange, distributed by the NASA Center for Climate Simulation (NCCS), and transformed by Travis Logan at Ouranos, Montreal, Canada. The data cover the southern part of Quebec, Canada, and summarize the outputs of 21 climate simulations and two greenhouse gas emission scenarios (RCP). The data are divided in three sets: historical (1970-2000), future (2041-2070) with a 4.5 RCP and future (2041-2070) with a 8.5 RCP.
DOI: 10.5061/dryad.792gj/1
title: Kernaléguen et al. 2016 DATA

description: Data from Mating success and body condition not related to foraging specialisations in male fur seals, L. Kernaléguen, Y. Cherel, C. Guinet and J. P. Y. Arnould
DOI: 10.5061/dryad.83np7/1
title: data of the soil and chemotaxis experiment

description: .xls file with four sheets including the data and meta-data of the soil experiment and the chemotaxis experiment
DOI: 10.5061/dryad.97k0m/1
title: Vararia ambigua He2385 IMG_0132
DOI: 10.5061/dryad.97k0m/2
title: Vararia amphithallica He3223 IMG_1208
DOI: 10.5061/dryad.97k0m/3
title: Vararia bispora He20120724-15 IMG_0138
DOI: 10.5061/dryad.97k0m/4
title: Vararia montana sp. nov. He2933 IMG_0128
DOI: 10.5061/dryad.98d51/1
title: Supplementary Figure 1: Parsimony-based strict consensus of the 26S rDNA data matrix for the Pleurostylia analysis.

description: Parsimony-based strict consensus of the 26S rDNA data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch
DOI: 10.5061/dryad.98d51/2
title: Supplementary Figure 2: Parsimony-based strict consensus of the ITS rDNA data matrix for the Pleurostylia analysis.

description: Parsimony-based strict consensus of the ITS rDNA data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.98d51/3
title: Supplementary Figure 3: Parsimony-based strict consensus of the rDNA (ITS + 26S) data matrix for the Pleurostylia analysis.

description: Parsimony-based strict consensus of the rDNA (ITS + 26S) data matrix for the Pleurostylia analysis. Jackknife values ≥ 50% are shown above each branch.
DOI: 10.5061/dryad.9t0n8/1
title: Derived data for ecometric analysis

description: This zip folder includes csv files of derived trait data, climate data, and geographic presence and absence data for North American mammals, excluding bats. All of the geographic occurrences are sampled at 50 km, 100 km, and 250 km equidistant points across North America.
DOI: 10.5061/dryad.cq2rb/20
title: MS5
DOI: 10.5061/dryad.g77m8/3
title: Bird survey info

description: Point count visit info with date, time, cloud cover
DOI: 10.5061/dryad.gt5c0/1
title: Data for Repository - Tattersall Roussel Voituron Teulier

description: Data used to construct figures 1, 2, and 3
DOI: 10.5061/dryad.h35p4/2
title: Raw Protein RPAs Constructed features replicate corrected

description: File shows the relative peak area (RPA), i.e. peak area value of the measured protein after normalization to the HSP70 level analyzed in parallel in each sample (columns 2-24, 28-42). This file contains one sample per row and one protein per column with the sample name in the first column and the protein name in the first row. Column 25-27 contain the result of the mutation analysis of KRAS and BRAF. One in column 25 (MutationKRAS) indicate that KRAS is mutated in the sample, one in column 26 (MutationBRAF) indicates that BRAF is mutated, while one in column 27 (Wildtype) indicate that neither KRAS nor BRAF is mutated. Columns 28 to 42 contain the RPA values of the constructed features, i.e. features that are calculated based on the 23 different activity levels of the 7 signal transducers in column 2-24. The four replicates of each constructed feature contains the minimum, maximum, mean, and median value based on all possible ways to combine the replicates of the proteins used to construct the feature. A one in the binary variables in column 43-46 indicate the classification of each sample as normal mucosa, colorectal cancer (CRC) stage II, CRC stage IV, or metastasis. In the last column the classification is 1 = normal mucosa, 2 = colorectal cancer (CRC) stage II, 3 = CRC stage IV, or 5 = metastasis. NaN is used to indicate that no measurement was done.
DOI: 10.5061/dryad.h35p4/3
title: Padhan BMC Cancer 2016 Supplemental Results

description: File contains the test statistic (T) for each possible combination of 1-3 features, including the constructed features (column 5 and 6). One combination is shown per row with the name of the feature combination in the first column and the header explaining the value in each column in the first row.
DOI: 10.5061/dryad.j430t/1
title: Hyperspectral reflectance of winterwheat in relation to plant and soil characteristics

description: This file contains data from a greenhouse experiment where winter wheat plants were grown in sterilized soil, inoculated with different microbial suspensions. Includes hyperspectral reflectance, indices, shoot biomass of winter wheat, C:N ratio's of plants, bacterial diversity based on sequencing
DOI: 10.5061/dryad.j8s0v/2
title: Data for germination and juvenile survival

description: Data for germination and juvenile survival
DOI: 10.5061/dryad.j8s0v/3
title: Data on adult survival and flower number

description: Data on adult survival and flower number
DOI: 10.5061/dryad.j8s0v/4
title: Seed counts

description: Seed counts
DOI: 10.5061/dryad.j8s0v/5
title: Pollen viability scores

description: Pollen viability scores
DOI: 10.5061/dryad.jk680/1
title: genepop_all_snps

description: Genotypes data (all loci) for S. namaycush individuals in Genepop format.
DOI: 10.5061/dryad.jk680/3
title: genepop_pot_selected_snps

description: Genotypes data (48 potentially selected loci, intersection of Bayenv2 and LFMM results) for S. namaycush individuals in Genepop format.
DOI: 10.5061/dryad.jk680/4
title: population_map

description: Individual's population membership (by population (or lake) or sympatric ecotype).
DOI: 10.5061/dryad.kj6j1/1
title: Figure 2: Mortality data for selected lines and controls

description: Mortality as a function of temperature for Tigriopus californicus lines selected for increased heat tolerance (Treatment = SEL) and Controls (Treatment = U)
DOI: 10.5061/dryad.kj6j1/2
title: Figure 3 data: effects of selection treatment and ambient salinity on heat tolerance

description: Data used to generate figure 3.  Mortality as a function of temperature for three selection treatmnts (HS= high salinity, LS = low salinity, U = control) at three ambient salinities (low= 15ppt, med = 35 ppt, high = 70 ppt).
DOI: 10.5061/dryad.kj6j1/3
title: Figure 4 data: Fecundity(larvae per day) from each of four selection treatments at each of three exposure salinities
DOI: 10.5061/dryad.kv2kh/1
title: XY coordinates of individual baboons

description: This dataset consists of 74 days of full-day follows of a baboon troop (Papio hamadryas ursinus) at the DeHoop Nature Reserve in South Africa. Individual GPS points of all adult group members (N=14) were collected continuously throughout the day by an observer walking repeatedly from one end of the group to the other. A GPS point was taken on all adults present in the group by holding the GPS receiver above the animal (or as close as possible) to record its position and individual identity
DOI: 10.5061/dryad.nr477/1
title: cuckoo females are not choosy_data_DRYAD

description: cuckoo competition hypothesis, chromatic contrasts, pattern coverage, egg volumes, mean reflectance and pattern coverage of cuckoo ad great reed warbler eggs. Single cones sensitivities.
DOI: 10.5061/dryad.pt7n3/1
title: poa_alpina_data

description: This file contains all raw data on the first sheet, with the site name, elevation of the site, site location (region in Switzerland),  individual number (genotype_replicate clone), population name, origin of the population, sympatric vs. allopatric criterion (sympatric, near-allopatric, far-allopatric), initial tiller number (initial tiller), height of inflorescences (height), number of tillers (ntiller), number of inflorescences (nrepro), incidence of reproduction (repro), vegetative biomass (vegbiom), survival, reproductive biomass (reprobiom), and specific leaf are (sla). On the second sheet, you willl find the data for the selection analysis of plasticity at the small spatial scale (sympatric - near-allpoatric : SA), with the standardized plasticity index (stand_index), the standardized specific leaf area (stand_sla),  and the relative fitness (relat-fit). Same for the third sheet, except with data calculted at the larger spatial scale (sympatric - far-allopatric: SF). IMPORTANT NOTE: The population codes between the data file and the manuscript were changed. Below you will find the population codes from the data file, the correspondant codes in the manuscript and the original home site (sympatric) of those populations: PAD1 --&gt; stays PAD1, home at FluelpassPAD2 --&gt; stays PAD2, home at Schwarzhorn (was removed from files and analysis)PAD7 --&gt; became PAD3, home at SchiahornPAZ1 --&gt; stays PAZ1, home at SchwarzseePAZ3 --&gt; became PAZ2, home at RothornPAZT4 --&gt; became PAZ3, home at FuriOne population was removed from analysis (as it did not amplify to microsatellite PCR, see results). However, we made a mistake in the manuscript in stating that this population was PAD3. Instead, it is population PAD2 that was removed from analysis (and the data file), as can be seen in Figure 2.
DOI: 10.5061/dryad.q0g60/1
title: Smith et al_Images and Relative Warp Scores

description: Images of resident and vagrant fish species used for landmarking and output file of coordinates (relative warp scores) obtained from relative warp analysis (tpsRelw).
DOI: 10.5061/dryad.r0p00/1
title: SNP variants across yellow-rumped warbler complex

description: Variant calls for 37,518 polymorphic SNPs assayed across the yellow-rumped warbler complex. "sitenum" in "README" files correspond to the site information reported in Table 1 of the main manuscript. See main text for information about mapping, variant calling, and filtering.
DOI: 10.5061/dryad.s611n/1
title: ROV navigation

description: The benthic video surveys (Table 1) were conducted by the remotely operated vehicle (ROV) 'ROPOS'. The video annotation data and ROV navigation (for georeferencing) are linked by LogIDs.
DOI: 10.5061/dryad.s611n/2
title: CHONe_MB-18_DuPreezC_data

description: The spatial distribution of Scorpaenidae fish (thornyhead and rockfish), deep-sea sponges and corals, substratum types, and trawling evidence on and around Learmonth Bank, British Columbia (from Du Preez and Tunnicliffe 2011). Additional data collected and included in this data package, but not used in the original publication, include: distribution of other benthic fish (e.g., skates and flatfish), some invertebrates, sediment types (with percent coverage), and ROV operational information. All biotic and abiotic seafloor data were collected from the annotation of benthic video surveys (Table 1) conducted by the remotely operated vehicle (ROV) ROPOS (navigational data included as Table 2). Data attributes and definitions are also provided. This is was a Canadian Healthy Oceans Network (CHONe) Marine Biodiversity Project, MB-18.
DOI: 10.5061/dryad.s611n/3
title: Data attributes and definitions

description: Tables detailing the attributes and definitions of data in Table_1_video_annotation.txt and Table_2_ROV_navigation. txt.
DOI: 10.5061/dryad.tb2p4/1
title: Coral Viromes

description: Coral viromes extracted from Porites rus, Acropora sp., Acropora yongei, Pocillopora verrucosa
DOI: 10.5061/dryad.v5m24/1
title: FLUIDIGM SNP data in genepop format

description: FLUIDIGM SNP data in genepop format from all genotyped individuals analyzed in the present study. The data includes both data from the paper of pujolar et al. 2014a and new data.
DOI: 10.17632/xjyd2f4nf3.1
title: Tesis disseny gràfic

description: Llistat de tesis doctorals sobre disseny gràfic publicades a Espanya des de 1976
DOI: 10.5061/dryad.1j84f/1
title: US vs. UK lineup data

description: Data for Seale-Carlisle & Mickes paper on US vs. UK lineups.
DOI: 10.5061/dryad.253p6/1
title: 3D data stack  (superficial renal vasculature)

description: Dimensions are 1640x1640x69, corresponding to 850x850x497 micrometers.
DOI: 10.5061/dryad.253p6/2
title: 3D data stack 2  (superficial renal vasculature)

description: Dimensions 1708x1708x150, corresponding to 850x850x1018 micrometers
DOI: 10.5061/dryad.3rt26/1
title: Humphreysetal_MEE_CRBD_trees

description: Trees simulated using a constant-rate birth-death model, using parameter values estimated for each of 9 clades. The file contains 9 x 500 trees.
DOI: 10.5061/dryad.3rt26/2
title: Humphreysetal_MEE_VRBD_trees

description: Trees simulated using a variable-rate birth-death model, using parameter values estimated for each of 9 clades. The file contains 9 x 100 trees.
DOI: 10.5061/dryad.46fb1/1
title: SNPs_subset

description: A VCF file containing a random subset (1%) of all SNPs discovered in this study. This file was used for conducting PCA and calculating nucleotide diversity.
DOI: 10.5061/dryad.46fb1/2
title: mtDNA_alignments

description: The zip file contains the three mtDNA alignments used in this study. "mitogenomes.fas" is the alignment of the mitogenomes of the 81 individuals included in this study together with an outgroup. Control Region was removed from the alignment. Based on it, two other alignments, "alignment_with_1994-cytb.fas" and "alignment_with_2008-cytb.fas", were created by incorporating the data from Orti et al. (1994) and Makinen & Merila (2008), respectively.
DOI: 10.5061/dryad.55f3s/3
title: A genome-wide assessment of genetic diversity and population structure of  Korean native cattle breeds

description: Plink format Ped and Map file
DOI: 10.5061/dryad.5c84j/12
title: Short-term Climate Variabiliy Models - directory 6 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Dolichonyx, Dryocopus, Dumetella, Egretta, Elanoides, Elanus, Empidonax, and Eremophila.
DOI: 10.5061/dryad.5c84j/13
title: Short-term Climate Variabiliy Models - directory 7 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Eudocimus, Eugenes, Euphagus, Falco, Fulica, Gallinago, Geococcyx, Geothlypis, Grus, Gymnorhinus, Haliaeetus, Himantopus, Hirundo, Hylocichla, Icteria, Icterus, and Ixoreus.
DOI: 10.5061/dryad.5c84j/14
title: Short-term Climate Variabiliy Models - directory 8 of 16

description: Contains Model output data for Short-term Climate Variability Models for species in the genera Junco, Lanius, Leptotila, Leucophaeus, Limnothlypis, Lophodytes, Loxia, Megaceryle, Megascops, Melanerpes, Meleagris, and Melospiza.