cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tqfsc3
title: Occurrence Download

description: A dataset containing 671120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Serbia",
 "OccurrenceStatus is Present",
 "Year 2016-2023"
 ]
}

 The dataset includes 671120 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047455-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6299409
title: Tara Pacific samples provenance and environmental context - version 2

description: This publication includes the provenance metadata and environmental context of all samples generated by the Tara Pacific Expedition. The metadata fields and parameters are detailed in the readme files. Provenance is given in a single UTF-8 encoded tab-separated-values file. Environmental context is provided in eleven UTF-8 encoded tab-separated-values files, all with the same structure, but each providing a different statistic: "n" = number of values "mean" = mean value "stdev" = standard deviation "P05" = 5 percentile, i.e. minimum (Q0) "P25" = 25 percentile, i.e. first quartile (Q1) "P50" = 50 percentile, i.e. median (Q2) "P75" = 75 percentile, i.e. third quartile (Q3) "P95" = 95 percentile, i.e. maximum (Q4) "dt" = lag in time, i.e. difference between the collection date/time of the sample and that of the environmental context provided "dxy" = lag in horizontal space, i.e. distance between the collection location of the sample and that of the environmental context provided "dz" = lag in vertical space, i.e. difference between the collection depth/altitude of the sample and that of the environmental context provided Missing value terms are: "nav" = not-available, i.e. the expected information is not given because it has not been collected or generated "npr" = not-provided, i.e. the expected information has been collected or generated but it is not given, i.e. a value may be available in a later version or may be obtained by contacting the data providers "nac" = confidential, i.e. the expected information has been collected or generated but is not available openly because of privacy concerns "nap" = not-applicable, i.e. no information is expected for this combination of parameter, environment and/or method, e.g. depth below seabed cannot be informed for a sample collected in the water or the atmosphere
description: Special thanks to the Tara Ocean Foundation, the R/V Tara crew and the Tara Pacific Expedition Participants (https://doi.org/10.5281/zenodo.3777760). We are keen to thank the commitment of the following institutions for their financial and scientific support that made this unique Tara Pacific Expedition possible: CNRS, PSL, CSM, EPHE, Genoscope, CEA, Inserm, Université Côte d'Azur, ANR, agnès b., UNESCO-IOC, the Veolia Foundation, the Prince Albert II de Monaco Foundation, Région Bretagne, Billerudkorsnas, AmerisourceBergen Company, Lorient Agglomération, Oceans by Disney, L'Oréal, Biotherm, France Collectivités, Fonds Français pour l'Environnement Mondial (FFEM), Etienne Bourgois, and the Tara Ocean Foundation teams. Tara Pacific would not exist without the continuous support of the participating institutes. The authors also particularly thank Serge Planes, Denis Allemand, and the Tara Pacific consortium.
DOI: 10.25675/10217/171907
title: Snow persistence grids and snow zone shape files for the western United States

description: These files were created by Cara Moore and Brandon Stone under the guidance of Stephanie Kampf at Colorado State University in July, 2012.
description: Zip file includes ReadMe and data files.
description: This study maps the geographic extent of intermittent and seasonal snow cover in the western United States using thresholds of 2000–2010 average snow persistence derived from moderate resolution imaging spectroradiometer snow cover area data from 1 January to 3 July. Results show seasonal snow covers 13% of the region, and intermittent snow covers 25%. The lower elevation boundaries of intermittent and seasonal snow zones increase from north-west to south-east. Intermittent snow is primarily found where average winter land surface temperatures are above freezing, whereas seasonal snow is primarily where winter temperatures are below freezing. However, temperatures at the boundary between intermittent and seasonal snow exhibit high regional variability, with average winter seasonal snow zone temperatures above freezing in west coast mountain ranges. Snow cover extent at peak accumulation is most variable at the upper elevations of the intermittent snow zone, highlighting the sensitivity of this snow zone boundary to climate conditions.
DOI: 10.5067/qianjyjgrwov
title: SnowEx21 Time Series Snow Pits, Version 1
DOI: 10.5281/zenodo.13993394
title: Clinical phenotypes in acute and chronic infarction explained through human ventricular electromechanical modelling and simulations

description: This dataset includes the meshes, model parameters, and Alya executable binary for simulating acute and chronic stage post-myocardial infarct using Alya, to replicate the results in the article https://doi.org/10.7554/eLife.93002.1

For each scenario simulated, a baseline simulation folder is provide with all the required meshes, fields, and model parameters necessary to run an Alya simulation. An additional series of models with variability in ionic conductances is also included for each scenario under the folder <scenario>_pom/, under which 20 simulations are included. For each simulation, only the file describing the ionic conductance scaling factors (ventricular_cell.txt) are included, all other files required to run each particular simulation can be found in the <scenario>_baseline/ version. 

The file structure is as follows:



Alya executable binary

control_baseline

control_pom

75%_transmural_scar



acute



bz1_baseline

bz1_pom



pom_id_0

...

pom_id_19



bz2_baseline

bz2_pom



pom_id_0

...

pom_id_19



bz3_baseline

bz3_pom



pom_id_0

...

pom_id_19





chronic



rz1_baseline

rz1_pom



pom_id_0

...

pom_id_19



rz2_baseline

rz2_pom



pom_id_0

...

pom_id_19





fast_pacing



alternans1

alternans4






The simulation files in alternans4/ was use to generate results Figure 6 of the accompanying article, and alternans1/ was used to generate results Figure 7. 

The Alya executable binary has been built on ARCHER2 with the following loaded modules:

1) craype-x86-rome     2) libfabric/1.12.1.2.2.0.03) craype-network-ofi             4) perftools-base/22.12.0             5) xpmem/2.5.2-2.4_3.30__gd0f7936.shasta  6) bolt/0.8         7) epcc-setup-env    8) load-epcc-module 9) gcc/11.2.0       10) craype/2.7.19      11) cray-dsmml/0.2.2  12) cray-mpich/8.1.23 13) cray-libsci/22.12.1.1  14) PrgEnv-gnu/8.3.3  15) tk/8.6.13           16) tcl/8.6.13    17) cray-python/3.9.13.118) matplotlib/3.7.2To replicate the study, access to an installation of the code in the Nord supercomputer can be requested to mariano@elem.bio
DOI: 10.5281/zenodo.4454537
title: Data set supplementing "Benchmarking triage capability of symptom checkers against that of medical laypersons: Survey study"

description: This is the de-identified data set used to conduct the analyses in the study published as Original Research in the JMIR under the title "Benchmarking triage capability of symptom checkers against that of medical laypersons: Survey study" (https://doi.org/10.2196/24475) The data set contains the assessments of the urgency of symptoms to 45 fictitious clinical case vignettes by 91 US participants, and the participants' age, gender and level of education. Data for the symptom checker apps is needed to fully reproduce our study and can be found in the appendix of the paper "Evaluation of symptom checkers for self diagnosis and triage: audit study" by Semigran et al. (2015) (https://doi.org/10.1136/bmj.h3480).
DOI: 10.6084/m9.figshare.27646026.v1
title: <b>Impact of chlorine dioxide and chlorhexidine mouthwashes on friction and surface roughness of orthodontic stainless steel wires: an in vitro comparative study</b>

description: <b></b>Good oral hygiene measures are important for successful orthodontic treatment. They involve various types of mouthwashes which have been reported to cause alteration of mechanical properties of archwires. This study aimed to evaluate the effects of a new kind of chlorine-dioxide-containing mouthwash on the mechanical properties and surface morphology of stainless steel orthodontic archwires against the already prevalent chlorhexidine mouthwash in the market.
DOI: 10.15470/ffrnjq
title: Cryptogams of the Balearic Islands

description: The CBI dataset contains chorological data from cryptogams from the Balearic Islands collected in field surveys starting from 2016. This includes organisms from the Kingdoms Plantae (pteridophytes, bryophytes, chlorophytes and rhodophytes), Chromista (ochrophytes) and Fungi (including lichens).
DOI: 10.17189/1414221
title: MAVEN Solar Wind Electron Analyzer (SWEA) Archive Rate 3D Electron Distributions Data Collection

description: A collection of MAVEN Solar Wind Electron Analyzer (SWEA) electron energy/angle (3D) distributions in units of differential energy flux (eV/cm**2 sec ster eV) at the MAVEN archive telemetry rate.
DOI: 10.25966/427f-8370
title: NEX-DCP30-CMIP6

description: The statistical downscaling algorithm used to create the NEX-DCP30-CMIP6 dataset is a daily variant of the monthly BCSD method.
DOI: 10.5281/zenodo.11202532
title: Shock compression of coesite up to 950 GPa
DOI: 10.5281/zenodo.11372557
title: Effect of Informative Cesarean Delivery Operative Steps Video to Maternal Anxiety Level: a Randomized Controlled Trial

description: This is a SPSS data for analysis in "Effect of Informative Cesarean Delivery Operative Steps Video to Maternal Anxiety Level: a Randomized Controlled Trial" research, and video is used for intervention group.
DOI: 10.5281/zenodo.13338063
title: Ligand Many-Body Expansion as a General Approach for Accelerating Transition Metal Complex Discovery

description: Dataset of transition metal complex structures in .xyz file format, computed and predicted energies in comma delimited format, model information in JSON format, and the Mathematica script for uncertainty analysis for associated manuscript.
DOI: 10.5281/zenodo.14187520
title: Ferrous iron (Fe+2) released from iron-rich chlorite as a reductant for unconformity-related uranium mineralization: insights from reactive fluid flow modeling

description: Tables 1-5
DOI: 10.5281/zenodo.5903352
title: Github BPMN Artifacts Dataset 2021

description: Information about 327,436 potential BPMN artifacts identified in all public Github repositories referenced in the GHTorrent dump from March 2021. The data file is in line-delimited JSON format, with each row containing an array with the following six elements: GHTorrent project ID GitHub user name GitHub repository name GitHub branch name Path to file inside repository SHA1 hash of the file's contents To get a list of retrievable URLs, use e.g. the following Python one-liner: <pre><code class="language-bash">python3 -c 'import json; import sys; print(*[f"https://raw.githubusercontent.com/{u}/{r}/{b}/{f}" for _, u, r, b, f, _ in map(json.loads, sys.stdin)], sep="\n")' &lt; bpmn-artifacts.jsonl &gt; urls.txt</code></pre> (using the hashes to filter out duplicates first is recommended though)
DOI: 10.5281/zenodo.6054092
title: Data Set on Accuracy of Symptom Checker Apps in 2020

description: These two data sets present the accuracy of triage (disposition) and diagnostic advice of symptom checker apps sampled in 2020. The sample consists of 22 commonly used symptom checker apps, of which 14 also provide diagnostic advice. The apps were tested on 45 case vignettes, i.e. fictitious descriptions of patients. As not every app was able to appraise every vignette our study yielded a total of 796 unique triage evaluations and 520 unique diagnostic evaluations. The data sets are a supplement to the paper "Triage Accuracy of Symptom Checker Apps: A Five-year Follow-up Evaluation" (doi: 10.2196/31810). The was collected by Anna Dames as partial requirement for her MSc degree in Human Factors in the Department of Psychology and Ergonomics (IPA) at Technische Universität Berlin. The clinical vignettes were originally compiled and modified by Semigran et al. in 2015 (https://doi.org/10.1136/bmj.h3480), and further adapted by Hill et al. (2020) (doi: 10.5694/mja2.50600) and in the study these data sets are supplement to (doi: 10.2196/31810).
description: Explanations of coding 1) Each case vignette was assigned a goldstandard triage level by an expert panel (see Semigran et al. (2015)). These are coded as follows: "Em" for "emergency care required"; "NE" for "Non-emergency care required" and "Sc" for "Self-care sufficient". For those apps which only flag emergency, "non-em" was coded for evaluations where they did not consider vignette to be an emergency. 2) Diagnostic accuracy is categorized into three levels: an app providing the correct diagnostic suggestion as first suggestion ("1"), within the first ten suggestions ("10"), or not providing the correct diagnostic suggestion at all ("0").
description: {"references": ["Hill MG, Sim M, Mills B. The quality of diagnosis and triage advice provided by free online symptom checkers and apps in Australia. Medical Journal of Australia [Internet] 2020 May 11 [cited 2020 May 14];mja2.50600. [doi: 10.5694/mja2.50600]", "Semigran HL, Linder JA, Gidengil C, Mehrotra A. Evaluation of symptom checkers for self diagnosis and triage: audit study. BMJ [Internet] 2015 Jul 8 [cited 2018 Jun 3];h3480. [doi: 10.1136/bmj.h3480]", "Schmieding ML, Kopka M, Schmidt K, Schulz-Niethammer S, Balzer F, Feufel MA. Triage Accuracy of Symptom Checker Apps: A Five-year Follow-up Evaluation (Preprint). Journal of Medical Internet Research [Internet] 2021 Jul 7 [cited 2022 Feb 6]; [doi: 10.2196/31810]"]}
DOI: 10.5291/ill-data.5-54-305
title: Determining the magnetic modulation and phase diagram of skyrmion-hosting magnetic multilayers by SANS
DOI: 10.5291/ill-data.5-54-333
title: SANS study of the magnetism in skyrmion-hosting magnetic multilayers
DOI: 10.5291/ill-data.5-54-379
title: Magnetic correlations in room-temperature skyrmion multilayers
DOI: 10.6084/m9.figshare.10302218
title: Global pesticide pollution risk data sets

description: Three global maps are included in this data set: the first is the pesticide risk scores map showing the exposure of agricultural land to pesticide pollution, the second is the active ingredient counts map quantifying the number of active ingredients posing pollution risk to agricultural land and showing the exposure of environment to pesticide mixtures, and the third is the regions of concern map identifying areas susceptible to pesticide pollution. <br>A zip folder containing an example of risk score calculation is attached together with this data set. Details of the methods used to produce these maps and the tabulated data can be found in Tang F.H.M, Lenzen M., McBratney A., and Maggi F. (2021). Risk of pesticide pollution at the global scale, Nature Geoscience.<br>
DOI: 10.6084/m9.figshare.25591218.v1
title: <b>Draft Annotated Genome of the Entomopathogenic Fungus </b><b><i>Metarhizium pingshaense </i></b><b>Isolated from </b><b><i>Spodoptera </i></b><b>species</b>

description: The entomopathogenic fungus <i>Metarhizium pingshaense </i>utilizes diverse insect host species. We present an annotated draft genome of <i>M. pingshaense</i> (CSIRO strain M-1000) isolated from a <i>Spodoptera </i>moth,  thereby contributing to future research of <i>M. pingshaense</i> as a potential biological control agent.
DOI: 10.6084/m9.figshare.25904044
title: Genome annotation of <i>Serangium japonicum</i>

description: Genome annotation (repeats and protein-coding genes)
DOI: 10.17632/3drx8fmmz9.1
title: ERA-interim reanalysis based radiative kernels

description: How to cite:
Huang, Y., Xia, Y., and Tan, X. (2017), On the pattern of CO2 radiative forcing and poleward energy transport, J. Geophys. Res. Atmos., 122, 10,578– 10,593, doi:10.1002/2017JD027221.
DOI: 10.17632/dwtn3c6w6p.1
title: Rice Leaf Diseases Dataset

description: Overview: The Rice Life Disease Dataset is an extensive collection of data focused on three major diseases that affect rice plants: Bacterial Blight (BB), Brown Spot (BS), and Leaf Smut (LS). The dataset has been curated to assist researchers, agronomists, and machine learning practitioners in understanding, diagnosing, and potentially predicting the occurrence of these diseases, based on various attributes and parameters. Dataset Features: 1. Disease Type: This categorizes the observation into one of the three diseases: Bacterial Blight (BB), Brown Spot (BS), or Leaf Smut (LS). 2. Leaf Images: High-resolution images of rice leaves exhibiting symptoms of the specified disease. This aids in visual diagnosis and machine learning-based image recognition tasks. 3. Symptom Description: Textual description outlining the major symptoms visible on the leaf, offering a more detailed understanding of the disease's progression and manifestation. 4. Environmental Parameters: Data on temperature, humidity, and other weather conditions at the time of observation. This can help in understanding the environmental triggers for each disease. Potential Uses: 1. Disease Prediction and Early Detection: Machine learning models can be trained on this dataset to predict the likelihood of a rice plant contracting one of these diseases based on environmental and agronomic factors. 2. Disease Distribution Mapping: Understand the geographical spread and hotspots of these diseases. 3. Impact of Agronomic Practices: Determine which farming practices might contribute to or deter the spread of these diseases. 4. Image Recognition: Train machine learning models to automatically detect and classify these diseases from images of rice leaves.
DOI: 10.17632/wcgfc8xydv.1
title: Supplementary Materials For:Development and Characterisation of Three-Dimensional (3D) Cell Culture Models of Adrenocortical Carcinoma, Feely et al., 2024

description: Supplementary Materials
DOI: 10.18112/openneuro.ds003772.v1.0.1
title: Functionally dissociable influences on learning rate in a dynamic environment
DOI: 10.18112/openneuro.ds004934.v1.0.0
title: fMRI dataset: Violations of psychological and physical expectations in human adult brains
DOI: 10.25914/dttk-h476
title: AURA - Operational Radar Rainfields 3

description: The Rainfields 3 dataset is used operationally in Australia for QPE applications and therefore is a powerful dataset when accurate estimates of rain rate are required from radar. This dataset is provided in a Cartesian gridded netCDF4 files and includes the best practice corrections for issues which impact weather radar data. This dataset is intended for use by more general users who are interested in precipitation or hydrology applications.
DOI: 10.26302/sshade/experiment_dm_20121002_004
title: NIR and MIR reflectance spectra of AMES tholins (from 90% $N_2$:10% $CH_4$ gas)

description: NIR and MIR reflectance spectra of AMES tholins (from 90% $N_2$:10% $CH_4$ gas) after synthesis, at ambient temperature
DOI: 10.5257/census/aggregate-2011-2
title: 2011 Census aggegate data (Data downloaded: 1 February 2017)
DOI: 10.5281/zenodo.10958124
title: Data for cloud retrieval algorithm
DOI: 10.5281/zenodo.13353693
title: SuperDARN convection data and the 3D PPMLR-MHD simulation data on 27 February 2014
DOI: 10.5281/zenodo.14057098
title: Enhanced_Precipitation_of_energetic_protons_due_to_Uranus_asymmetric_magnetic_field

description: The dataset pertaining to Figures 1-4 in the academic paper titled: "Enhanced Precipitation of energetic protons due to Uranus asymmetric magnetic field" by Matthew Acevski and Adam Masters
DOI: 10.5281/zenodo.14175206
title: Globular cluster counts around 700 nearby galaxies

description: Catalog of number of globular clusters around galaxies in the DESI Legacy Imaging Survey, as described in Le & Cooper (2024). The columns are:



Galaxy name

RA [degree]

DEC [degree]

Log10 dark matter halo mass [Solar masses]

Number of globular clusters
DOI: 10.5281/zenodo.4546865
title: Daily snow water equivalent (SWE) observations from 1,065 stations in western North America for years 1960 - 2019.

description: This data set includes daily snow water equivalent (SWE) observations for the historical record to September 2019 at 1,065 stations in the western U.S. and western Canada. Remote telemetry stations measure snowpack by relating measurements of the overlying snowpack mass to the water depth equivalent. The data were obtained from the Natural Resources Conservation Service, the California Department of Water Resources, Alberta Environment, the British Columbia Ministry of Environment, and the Yukon Government Water Resources Branch. Two levels of data are provided. The file <em>snowPillowSWE_westernNA_level1_ncc.nc</em> has been formatted but not quality controlled. The file <em>snowPillowSWE_westernNA_level2_ncc.nc</em> has been formatted and quality controlled. Both files are in netCDF format. The level 1 product provides daily SWE from January 1, 1960, to September 1, 2019 (21,794 days; row dimension) for 1,065 stations (column dimension). The level 2 SWE product is formatted by water year (October 1 to September 30) starting on Oct. 1, 1960 and ending on September 1, 2019, for the 1,065 stations and 59 years. Thus, it is of dimension [366 days,1065 stations, 59 years]. See the metadata in the netCDF files for information on all variables. Missing data are indicated by <em>NaN</em>. Please refer to the following publication for more information on the data and QA/QC methods: Musselman, K.N., N. Addor, J. Vano, and N.P. Molotch (2021). Winter melt rates portend widespread declines in snow water resources. <em>Nature Climate Change</em>. DOI: 10.1038/s41558-021-01014-9
DOI: 10.5285/223b34a3-2dc5-c945-e063-7086abc0f274
title: Atlantic meridional overturning circulation observed by the RAPID-MOCHA-WBTS (RAPID-Meridional Overturning Circulation and Heatflux Array-Western Boundary Time Series) array at 26N from 2004 to 2023 (v2023.1).

description: The RAPID-MOCHA-WBTS (RAPID-Meridional Overturning Circulation and Heatflux Array-Western Boundary Time Series) programme has produced a continuous time series of the Atlantic Meridional Overturning Circulation (AMOC) at 26N that started in April 2004. This release of the time series covers the period from April 2004 to February 2023. The 26N AMOC time series is derived from measurements of temperature, salinity, pressure and water velocity from an array of moored instruments that extend from the east coast of the Bahamas to the continental shelf off Africa east of the Canary Islands. The AMOC calculation also uses estimates of the transport in the Florida Strait derived from sub-sea cable measurements calibrated by regular hydrographic cruises. The component of the AMOC associated with the wind driven Ekman layer is derived from ERA5 reanalysis. This release of the data includes a document with a brief description of the calculation of the AMOC time series and references to more detailed description in published papers. The 26N AMOC time series and the data from the moored array are curated by the British Oceanographic Data Centre (BODC). The RAPID-MOCHA-WBTS programme is a joint effort between NERC in the UK (Principal Investigator Ben Moat since 2021, Eleanor Frajka-Williams since 2020 to 2021, David Smeed 2012 to 2020, and Stuart Cunningham from 2004 to 2012), NOAA (PIs Ryan Smith and Denis Volkov) and NSF (PIs Prof. Bill Johns and Prof. Shane Elipot, Uni. Miami) in the USA.
DOI: 10.6084/m9.figshare.27117486
title: Natural Isotopic Abundance of Soil Ammonia Volatilization Excel Data

description: A dataset for 15N natural abundance of soil ammonia volatilization under different nitrogen (N) application rates, N fertilizer types, air temperatures, soil humidities, soil pH, soil types, and land use types.