cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.871980
title: Manure nitrogen production and application in cropland and rangeland during 1860 - 2014: A 5-minute gridded global data set for Earth system modeling

description: Given the important role of nitrogen input from livestock systems in terrestrial nutrient cycles and the atmospheric chemical composition, it is vital to have a robust estimation of the magnitude and spatiotemporal variation in manure nitrogen production and its application to cropland across the globe. In this study, we used the dataset from the Global Livestock Impact Mapping System (GLIMS) in conjunction with country-specific annual livestock populations to reconstruct the manure nitrogen production during 1860-2014. The estimated manure nitrogen production increased from 21.4 Tg N/yr in 1860 to 131.0 Tg N/yr in 2014 with a significant annual increasing trend (0.7 Tg N/ yr, p &lt; 0.01). Changes in manure nitrogen production exhibited high spatial variability and concentrated in several hotspots (e.g., Western Europe, India, northeastern China, and southeastern Australia) across the globe over the study period. In the 1860s, the northern midlatitude region was the largest manure producer, accounting for ~52 % of the global total, while low-latitude regions became the largest share (~48 %) in the most recent 5 years (2010-2014). Among all the continents, Asia accounted for over one-fourth of the global manure production during 1860-2014. Cattle dominated the manure nitrogen production and contributed ~44 % of the total manure nitrogen production in 2014, followed by goats, sheep, swine, and chickens. The manure nitrogen application to cropland accounts for less than one-fifth of the total manure nitrogen production over the study period. The 5 arcmin gridded global dataset of manure nitrogen production generated from this study could be used as an input for global or regional land surface and ecosystem models to evaluate the impacts of manure nitrogen on key biogeochemical processes and water quality. To ensure food security and environmental sustainability, it is necessary to implement proper manure management practices on cropland across the globe.
description: Data are in ascii-format at a spatial resolution of 5 minute by 5 minute (latitude by longitude).Header for ascii-format files - ncols: 4320- nrows: 2124- xllcorner: -180- yllcorner: -88.5- cellsize: 0.0833333- NODATA_value: -9999
description: Supplement to: Zhang, Bowen; Tian, Hanqin; Lu, Chaoqun; Dangal, R S Shree; Yang, Jia; Pan, Shufen (2017): Global manure nitrogen production and application in cropland during 1860-2014: a 5 arcmin gridded global dataset for Earth system modeling. Earth System Science Data, 9(2), 667-678
DOI: 10.17034/c682299e-3d9c-4b67-9c39-c70d210da575
title: Dataset for "Many-body Theory Calculations of Positron Binding to Halogenated Hydrocarbons"

description: The dataset includes the input files for EXCITON+ that include the Gaussian basis parameters and molecular geometries used. A zip of the input files (bse.inp and INPUT) required to run the EXCITON+ code for each molecule considered in related publication. The zip consists of subdirectories named after each molecule. Each molecule's subdirectory contains the two input files bse.inp and INPUT. 

Abstract for "Many-body Theory Calculations of Positron Binding to Halogenated Hydrocarbons":
Positron binding energies in halogenated hydrocarbons are calculated \emph{ab initio} using many-body theory. For chlorinated molecules, including planars for which the interaction is highly anisotropic, very good to excellent agreement with experiment and recent DFT-based model-potential calculations is found. Predictions for fluorinated and brominated molecules are presented. The comparative effect of fluorination, chlorination and bromination is elucidated by identifying trends within molecular families including dihaloethylenes and halomethanes based on global molecular properties (dipole moment, polarizability, ionization energy). It is shown that relative to brominated and chlorinated molecules, fluorinated molecules generate a less attractive positron-molecule potential due to larger ionization energies and smaller density of molecular orbitals close to the HOMO, resulting in very weak, or in most cases loss of, positron binding. Overall, however, it is shown that the global molecular properties are not universal predictors of binding energies, exemplified by consideration of CH3Cl vs.~\emph{cis.}-C2H2F2: despite the latter having a larger dipole moment, lower ionization energy and similar polarizability its binding energy is significantly smaller (25 meV vs.~3 meV, respectively), owing to the important contribution of multiple molecular orbitals to, and the anisotropy of, the positron-molecule correlation potential.
DOI: 10.17909/3yqt-mh67
title: NGC 1614 CCGD
DOI: 10.21942/uva.24524794.v1
title: arXiv:2311.02941 Raw Data. analysis tools etc

description: Raw Data. analysis tools etc
DOI: 10.4121/421a26ac-4e92-411f-bb0a-5e6af21cf426
title: Data underlying the publication "Coherent Coupling of a Diamond Tin-Vacancy Center to a Tunable Open Microcavity"

description: Data underlying the research article "Coherent Coupling of a Diamond Tin-Vacancy Center to a Tunable Open Microcavity". In this physics experiment, we demonstrate and quantify the coherent interaction of a single Tin-Vacancy center in diamond with a fiber-based microcavity and show quantum nonlinear effects together with a simulated model. The measurements are performed in a quantum optics setup.The dataset contains the measured and simulated data and the python code to analyse and reproduce the figures shown in the main text and appendix. The measurements are conducted with the Python 3 framework Quantum Measurement Interface (QMI) and data is collected with Python-based data acquisition framework Quantify (see appendix for more details and references). The measured and simulated data is stored in individual hdf5 files, with a unique timestamp and identifier. Analysed data is stored in hdf5 files named processed dataset.Please see the README.md file for instructions on how to analyse the data and reproduce the figures.<br>
DOI: 10.4121/5ae194d5-481e-41c6-b924-679ab6da492d.v1
title: Data underlying the publication "Nonlinear Quantum Photonics with a Tin-Vacancy Center Coupled to a One-Dimensional Diamond Waveguide"

description: Data underlying the research article "Nonlinear Quantum Photonics with a Tin-Vacancy Center Coupled to a One-Dimensional Diamond Waveguide".In this physics experiment we fabricate a device consisting of tin-vacancy color centers in a diamond nanophotonic waveguide and investigate the interaction with light at the single-photon level by spectroscopy and photon correlation measurements.<br>The dataset contains the measured and simulated data and the jupyter notebooks to extract and reproduce the figures shown in the main text and appendix. The measurements are conducted with the Python 3 framework Quantum Measurement Interface (QMI) and data is collected with Python-based data acquisition framework Quantify. The measured, analyzed and simulated data is stored in individual hdf5 files. Fit results of individual datasets are collected in json files.Please see the README.md file for more information on the datasets and instructions on how to reproduce the figures.
DOI: 10.48328/tudatalib-909
title: Scripts and computed eigenvalues of plane Couette flow with wall-transpiration

description: This data set contains the MATLAB and Maple scripts employed for the paper written on the linear stability of plane Couette flow with wall-transpiration as well as the emerging computed eigenvalues.
DOI: 10.5067/aqua/airs/data319
title: Aqua AIRS Level 3 Standard Monthly Product using AIRS and AMSU without HSB V6
DOI: 10.5067/ujyex3xpwwb2
title: AMSR-E/Aqua level 3 global monthly Surface Soil Moisture Averages V005
DOI: 10.5281/zenodo.10225786
title: Data and Code associated to the paper "Quantum simulation of the tricritical Ising model in tunable Josephson junction ladders"

description: Modern hybrid superconductor-semiconductor Josephson junction arrays are a promising platform for analog quantum simulations. Their controllable and non-sinusoidal energy/phase relation opens the path to implement nontrivial interactions and study the emergence of exotic quantum phase transitions. Here, we propose the analysis of an array of hybrid Josephson junctions defining a 2-leg ladder geometry for the quantum simulation of the tricritical Ising phase transition. This transition provides the paradigmatic example of minimal conformal models beyond Ising criticality and its excitations are intimately related with Fibonacci non-Abelian anyons and topological order in two dimensions. We study this superconducting system and its thermodynamic phases based on bosonization and matrix-product-states techniques. Its effective continuous description in terms of a three-frequency sine-Gordon quantum field theory suggests the presence of the targeted tricritical point and the numerical simulations confirm this picture. Our results indicate which experimental observables can be adopted in realistic devices to probe the physics and the phase transitions of the model. Additionally, our proposal provides a useful one-dimensional building block to design exotic topological order in two-dimensional scalable Josephson junction arrays.
description: This dataset includes all measurements from the VUMPS and DMRG simulations necessary to reproduce the figures presented in the main publication. It also contains the files used for produceing the figures. In addition, we include all Julia files to reproduce the results of the publication. This includes a modified version of the ITensorInfiniteMPS.jl package, auxiliary files for controlling the simulations and the files starting the simulation itself. A detailed describition and how to start the simulation is given in the README.md file.

The obtained wavefunction's are not part of this dataset, since they exceed the allowed 50Gb. In case of interest, please contact the authors to gain access.
DOI: 10.5281/zenodo.10259090
title: MESA inlists and outputs for addition of non-nuclear energy to pair instability supernova progenitors

description: This archive collects the inlists and outputs for MESA stellar evolution models (MESA v.12778) of high initial mass stars, with zero initial metallicity and the addition of a non-nuclear energy source. Each file is labeled by the initial mass of the star (in solar masses) and the non-nuclear energy added (as a constant specific luminosity in erg/g/sec). The stellar masses we consider here surround the pair instability gap when no non-nuclear energy is added. By adding in non-nuclear energy, we can identify how effects like dark matter heating could impact the pair instability gap.
DOI: 10.5281/zenodo.10491448
title: Slip-dependence of fault frictional stability under hydrothermal conditions

description: Experimental data

eight columns in the CSV. file, from left to right, are: time (s), displacement (mm), friction coefficient, slip velocity (m/s), effective normal stress (MPa), temperature (℃), pore pressure (MPa) and axial displacement (mm).
DOI: 10.5281/zenodo.10530586
title: Cryptic diversity patterns of subterranean estuaries

description: Data and results used in the analyses for the article:

Calderón-Gutiérrez F, Labonté JM, Gonzalez B, Iliffe TM, Mejía‐Ortíz LM, Borda E. 2024. Cryptic diversity patterns of subterranean estuaries. Proceedings of the Royal Society B: Biological Sciences. (doi: 10.1098/rspb.2024.1483)
description: This work was supported by the Consejo Nacional de Ciencia y Tecnología (CONACYT - grant No. 472273), CONACYT- Texas A&M University (Grant No. 2018-044-1), institutional support from Texas A&M University Galveston, The Mohamed bin Zayed Species Conservation Fund (Grant No. 200523736), Texas A&M University San Antonio (start-up funds), T3: Texas A&M Triads for transformation (Grant No. 688), the National Science Foundation (Grant No. 2136322), and the National Science Foundation Graduate Research Fellowship Program (Grant No. M1703014).
DOI: 10.5281/zenodo.10534852
title: Data for Single Shot Measurement of Photonic Topological Invariant

description: Experimental data for the manuscript single shot measurement of photonic topological invariant.
DOI: 10.5281/zenodo.10551898
title: Ru(0001) surface phonon spectra

description: The file contains raw data of phonon spectra of a Ru(0001) surface and the DFT calculation used to interpret them.
DOI: 10.5281/zenodo.10636275
title: Data and code for "Exploring Two-dimensional Coherent Spectroscopy with Exact Diagonalization: Spinons and Confinement in 1D Quantum Magnets"

description: Two-dimensional coherent spectroscopy (2DCS) with terahertz radiation offers a promising new avenue for the exploration of many-body phenomena in quantum magnets. This includes the potential diagnosis of fractionalized excitations, for which linear response often struggles due to the indistinguishability of a continuum of fractional excitations from that caused by disorders or impurities. However, the interpretation of the complex results produced by 2DCS remains a challenge, and a general prediction of the spectral characteristics of different types of excitations has not yet been established. In this paper, we develop a numerical approach based on exact diagonalization (ED) to push our understanding of 2DCS towards different scenarios. We first validate our approach by comparing numerical ED and exact analytical results for the spectroscopic signatures of spinons in one-dimensional transverse field Ising model and develop how to deal with the inherently small system sizes in ED calculations. Augmenting the model by a longitudinal field, we demonstrate significant changes to the 2DCS spectrum upon the field-induced spinon pair confinement, which can be rationalized in our ED calculations and from a "two-kink" model (in the absence of integrability). One advantage of our ED approach is its possible extension to finite temperatures, which we explore using thermally pure quantum states and demonstrate to change the intensity and spectroscopical patterns of 2DCS when going beyond the integrable model. Our numerically exact results provide a benchmark for future experiments and theoretical studies relying on approximation methods, and pave the way for the exploration of fractionalized excitations in quantum magnets.
DOI: 10.5281/zenodo.10739134
title: Nutrient transport and uptake in suspended macroalgal farms

description: "data_turbulence_intensity": Turbulence and standing eddy intensity in different farm simulation cases.

"data_mixing_coeff": Turbulent and standing-eddy mixing coefficients in different farm simulation cases.

"data_nutrient_uptake" and "data_nutrient_uptake_velocity_dependence": Nutrient uptake in different farm simulation cases,  without or with the velocity dependence of uptake. 

"data_nutrient_profile": Nutrient profile development through the farm, for a low and high Damkohler number, respectively.
DOI: 10.5281/zenodo.10827097
title: Data and code for "Quantum chaos on edge" (matfiles, a matlab script, and figures)

description: The data files and matlab script to generate Figure 5,7,8 of the manuscript "Quantum chaos on edge" are uploaded.



In 'script' folder, there is a single matlab file to generate Fig 5,7,8. 

In 'raw_data' folder, there are mat-files to be processed by the script file.

In 'figures' folder, the generated figures are included.
DOI: 10.5281/zenodo.10837585
title: Vortex loop dynamics and dynamical quantum phase transitions in 3D fermion matter

description: Supplemental Material and data corresponding to the article 'Vortex loop dynamics and dynamical quantum phase transitions in 3D fermion matter'.

File description:



_sm.pdf - Supplemental Material to the article

fig_2_rate.txt - rate function corresponding to Fig. 2

fig_3_rate.txt - rate function $\lambda$ corresponding to Fig. 3

fig_3_rate_G.txt - rate function $\lambda_G$ corresponding to Fig. 3

fig_3a.txt - phase of the Green's function corresponding to Fig. 3a
DOI: 10.5281/zenodo.10865431
title: Resonant excitation of plasma waves in a plasma channel - data
DOI: 10.5281/zenodo.10982722
title: CESM2 Mechanically Decoupled (MD) for "Summer westerly wind intensification weakens Southern Ocean seasonal cycle under global warming" - submitted to Geophysical Research Letters

description: CESM2 Experiment names:



MD = mechanically decoupled model (referred to as MD in paper)

FC = fully coupled model (referred to as FC in paper)


Decoding file names:



ensmean refers to ensemble mean

trend refers to linear trend over 1950-2014


Variables:



SST = sea surface temperature

HMXL = mixed layer depth

WSPDSRFAV = horizontal total wind speed average at the surface
DOI: 10.5281/zenodo.10986261
title: Nonequilibrium Nonlinear Effects and Dynamical Boson Condensation in a Driven-Dissipative Wannier-Stark Lattice

description: Data corresponding to the article 'Nonequilibrium Nonlinear Effects and Dynamical Boson Condensation in a Driven-Dissipative Wannier-Stark Lattice'.

File description:



Data for Fig. 2:



fig1a.csv

fig1b.csv

fig1c.csv

fig1d.csv






Data for Fig. 3:



fig2a_omega_0.35_chi_0.01.csv, fig2a_omega_0.35_chi_0.02.csv, fig2a_omega_0.5_chi_0.01.csv, fig2a_omega_0.5_chi_0.02.csv

fig2b_chi_0.01.csv, fig2b_chi_0.02.csv






Data for Fig. 4:



plot_data_n_2.npz






Data for Fig. 5:



plot_data_cut_v3.npz
DOI: 10.5281/zenodo.11278215
title: Dataset for article "Photon superfluidity through dissipation"

description: This dataset contains data and code to replicate the figures for the article "Photon superfluidity through dissipation" published in Phys. Rev. Research:

Phys. Rev. Res. 6, 023266 (2024)https://doi.org/10.1103/PhysRevResearch.6.023266
DOI: 10.5281/zenodo.12748968
title: Data from Figures in "Ultralow-loss integrated photonics enables bright, narrow-band, photon-pair sources"

description: The MATLAB code and data used to produce the plots within "Ultralow-loss integrated photonics enables bright, narrow-band, photon-pair sources".
DOI: 10.5281/zenodo.12799226
title: Data and code for "Experimental Observation of Topological Quantum Criticality" (matfiles, matlab script, and figures)

description: Matlab code "zenodo_topological_quantum_criticality.m" generates Figure2 and 3 in the main script, and the Figure 2 and 3 in the Supplemental material. The generated figures are saved under folder 'figure', and the datasets used for the generation are saved under folder 'matfiles'. 

The raw measurement data (approx. 350 GB) will be shared only upon request. Please contact the Integrated Quantum Optics group (head: C. Silberhorn), Paderborn University.

This is additional information of the publication arXiv:2301.05428 "Experimental Observation of Topological Quantum Criticality"
DOI: 10.5281/zenodo.12820807
title: Source data including NIfTI images

description: The file src_data_conat.xlsx contains all available source data from the figures and tables. The sheets are named after the figure/table the data were used for. The sheet figs_supp_PL contains the data for Figs. S1, S13, S14, S15, S16 and Tab. S4.

 

The zipped folder src_data_images.zip contains the (group-level) NIfTI images in MNI space shown in different figures in both the main text and supplement. Their names are prefixed with the number of the figure. Tabs. 2 and S3 were created based on the files 2B_w_CR.nii.gz and 3_CR_sig.nii.gz.

 

The file data_validation.xlsx contains all data necessary to reproduce both the cross-sectional and longitudinal validation analyses (see subsection "CR score moderates effects of pathology on cognitive performance, also longitudinally" in the results section of the paper).
DOI: 10.5281/zenodo.13743903
title: The proper way to spatially decompose the gravitational-wave origin in stellar collapse simulations

description: This data release contains a jupyter notebook and data that are necessary to reproduce all the figures in the corresponding paper at https://arxiv.org/abs/2405.09729. The readme file explain the nature of the files. You can contact the author for futher information.
DOI: 10.5281/zenodo.13889543
title: Data for "Characterizing the chemical potential disorder in the topological insulator (Bi1−xSbx)2Te3 thin films"

description: Here, the data underlying all figures of the paper "Characterizing the chemical potential disorder in the topological insulator (Bi$_{1−x}$Sb$_x$)$_2$Te$_3$ thin films" is given in .csv or .txt file format.Furthermore, raw data files are provided.The STM/STS data was recorded and stored with the Nanonis SPM Control Software Version Generic 5 in the Nanonis file format (.sxm) for scan images, binary file format (.3ds) for STSgrids and ASCII file format for simple point STS.
DOI: 10.5281/zenodo.13986892
title: Data for "Spin orbital lattice entanglement in the ideal j=1/2 compound K2IrCl6"

description: Mott insulators with spin-orbit entangled j=1/2 moments host intriguing magnetic properties. The j=1/2 wave function requires cubic symmetry, while a noncubic crystal field mixes j=1/2 and 3/2 character. Spectroscopic studies of 5d^5 iridates typically claim noncubic symmetry, e.g., based on a splitting of the excited j=3/2 quartet. A sizable splitting is particularly puzzling in antifluorite-type K2IrCl6, a frustrated fcc quantum magnet with global cubic symmetry. It raises the fundamental question about the stability of j=1/2 moments against magneto-elastic coupling. Combining resonant inelastic x-ray scattering with optical spectroscopy, we demonstrate that the multi-peak line shape in K2IrCl6 reflects a vibronic character of the j=3/2 states rather than a noncubic crystal field. The quasimolecular crystal structure with well separated IrCl6 octahedra explains the existence of well-defined sidebands that are usually smeared out in solids. Our results highlight the spin-orbital-lattice entangled character of cubic K2IrCl6 with ideal j=1/2 moments.
DOI: 10.5281/zenodo.13988939
title: Data for "Learning Collective Cell Migratory Dynamics from a Static Snapshot with Graph Neural Networks"

description: This dataset contains snapshots of cell monolayers, represented as graphs, along with their corresponding average displacement measurements.
DOI: 10.5281/zenodo.4030231
title: Michael Deem's PCOD and PCOD2 databases of zeolitic structures

description: Originally hosted on http://www.mwdeem.rice.edu/files/ and http://www.hypotheticalzeolites.net/DATABASE/DEEM/index.php but as of September 2020, none of these websites are reachable. These are the two databases, exactly as downloaded on 14 September 2013, from http://www.mwdeem.rice.edu/files/ They are "DEEM DATABASE latest version - uploaded 2011-01-21", as labeled on http://www.hypotheticalzeolites.net/DATABASE/DEEM/index.php The structures were made freely available by Michael Deem and co-workers for many years, and for the sake of research reproducibility and open science, I am hosting them here as a mirror of the lost websites.
DOI: 10.5281/zenodo.5205561
title: ARABIDOPSIS 3D+T dataset

description: The dataset gathers points of 5 arabidopsis acquired at consecutive points in time (twice a day). The point cloud is generated using space carving based on 72 images which are acquired using a robotic arm moving around the plant. The soil base is removed using a height threshold. The plant is centered at (0,0,0) and voxel-based downsampled to a unified scale. For most plants, a topological skeleton is extracted and stored as a graph in the file: "skeleton_XXX_connected.txt"<br> And then the skeleton is segmented into different edges. The segmented skeletons' nodes are stored in "skeleton_XXX_noted.csv" This dataset was collected as part of the ROMI project. This project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No 773875 The link to ROMI project: https://romi-project.eu/