cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fmeqni
title: Occurrence Download

description: A dataset containing 457700 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada"
 ]
 },
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 {
 "or" : [
 "TaxonKey is Papilionidae",
 "TaxonKey is Riodinidae",
 "TaxonKey is Nymphalidae",
 "TaxonKey is Hesperiidae",
 "TaxonKey is Pieridae",
 "TaxonKey is Lycaenidae"
 ]
 }
 ]
}

 The dataset includes 457700 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027167-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbn3gq
title: Occurrence Download

description: A dataset containing 7497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Year 2018-2020",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Asclepias syriaca L."
 ]
}

 The dataset includes 7497 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052705-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18434/m32229
title: Simulated Radar Waveform and RF Dataset Generator for Incumbent Signals in the 3.5 GHz CBRS Band

description: This software tool generates simulated radar signals and creates RF datasets. The datasets can be used to develop and test detection algorithms by utilizing machine learning/deep learning techniques for the 3.5 GHz Citizens Broadband Radio Service (CBRS) or similar bands. In these bands, the primary users of the band are federal incumbent radar systems. The software tool generates radar waveforms and randomizes the radar waveform parameters. The pulse modulation types for the radar signals and their parameters are selected based on NTIA testing procedures for ESC certification, available at http://www.its.bldrdoc.gov/publications/3184.aspx. Furthermore, the tool mixes the waveforms with interference and packages them into one RF dataset file. The tool utilizes a graphical user interface (GUI) to simplify the selection of parameters and the mixing process. A reference RF dataset was generated using this software. The RF dataset is published at https://doi.org/10.18434/M32116.
DOI: 10.24381/cds.e3c841ad
title: Arctic regional reanalysis on pressure levels from 1991 to present
DOI: 10.24432/c5mw4z
title: Rice (Cammeo and Osmancik)
DOI: 10.25318/1310041801-eng
title:  Crude birth rate, age-specific fertility rates and total fertility rate (live births)

description: Crude birth rates, age-specific fertility rates and total fertility rates (live births), 2000 to most recent year.
DOI: 10.48326/idoc.medoc.spice.4.0
title: Data issued from SPICE instrument on Solar Orbiter: data release 4.0

description: SPICE produces three types of data: full spectra (full detector images), sit and stare observations (fixed slit), and scanned observations (the slit scanning the field of view). In scanned observations, up to 8 windows of 32 spectral pixels wide can be included.
DOI: 10.48786/edbt.2023.11
title: bloomRF: On Performing Range-Queries in Bloom-Filters with Piecewise-Monotone Hash Functions and Prefix Hashing
DOI: 10.5067/aqua/modis/l3m/iop/2022
title: Aqua MODIS Level 3 Mapped Inherent Optical Properties Data, Version R2022.0
DOI: 10.5281/zenodo.10039584
title: Dataset for deep focus microscopy
DOI: 10.5281/zenodo.10043826
title: High-power intracavity single-cycle THz pulse generation using thin lithium niobate

description: This dataset is accompanying the paper "High-power intracavity single-cycle THz pulse generation using thin lithium niobate"Autocorrelation.txt: second harmonic generation noncollinear autocorrelation trace data. (measurement device: Femtochrome FR-103XL)
Spectrum.txt: optical spectrum (measurement device: APE wavescan)
RF_1Mspan.txt: radio frequency spectrum with 1 MHz span (measurement device: ROHDE & SCHWARZ FPC1000)
RF_1Gspan.txt: radio frequency spectrum with 1 GHz span (measurement device: ROHDE & SCHWARZ FPC1000)
EOS_THz_raw.h5: electro-optic sampling raw data of the THz measurement in HDF-5 format (measurement device: ROHDE & SCHWARZ RTM3004)
EOS_noise_raw.h5: electro-optic sampling raw data of the noise measurement in HDF-5 format (measurement device: ROHDE & SCHWARZ RTM3004)
THz_time.csv: processed electro-optic sampling data of the THz measurement in time
THz_freq.csv: processed electro-optic sampling data of the THz measurement in frequency
Dark_time.csv: processed electro-optic sampling data of the noise measurement in time
Dark_freq.csv: processed electro-optic sampling data of the noise measurement in frequency
DOI: 10.5281/zenodo.10594123
title: Summer precipitation changes over the Great Lakes Region under a Warming Scenario

description: This is a temporary placeholder for the data/script of the manuscript "Summer precipitation changes over the Great Lakes Region under a Warming Scenario". It will be subject to change through the reviewing process.
DOI: 10.5281/zenodo.11398835
title: MSPB: a longitudinal multi-sensor dataset with phenotypic trait measurements from honey bees

description: We present a one-year-long Multi-Sensor dataset with Phenotypic trait measurements from honey Bees (MSPB). Data were continuously collected between April-2020 and April-2021 from 53 hives located at two apiaries in Québec, Canada. The sensor data included audio features, temperature, and relative humidity. The phenotypic measurements contained beehive population, number of brood cells (eggs, larva and pupa), Varroa destructor infestation levels, defensive and hygienic behaviors, honey yield, and winter mortality. Our study is amongst the first to provide a wide variety of phenotypic trait measurements annotated by apicultural science experts, which facilitate a broader scope of analysis on honey bees, such as bee acoustics analysis, multi-modal hive monitoring, queen presence detection, Varroa infection detection, hive population estimation, biological analysis of bees, etc.

Related Info

The data collection process, feature pre-processing, preliminary data analysis, and usage notes can be found in our paper https://arxiv.org/abs/2311.10876

Check the project webpage (https://zhu00121.github.io/MSPB-webpage/) and Github repo (https://github.com/MuSAELab/MSPB) for more information.

Citation

Kindly cite the following paper:

@misc{zhu2023mspb,

     title={MSPB: a longitudinal multi-sensor dataset with phenotypic trait measurements from honey bees},  

     author={Yi Zhu and Mahsa Abdollahi and Ségolène Maucourt and Nico Coallier and Heitor R. Guimarães and Pierre Giovenazzo and Tiago H. Falk},

     year={2023},

     eprint={2311.10876},

     archivePrefix={arXiv},

     primaryClass={eess.AS}

}

Contact

You can contact us at Yi.Zhu@inrs.ca, if you encounter any questions accessing the data.
DOI: 10.5281/zenodo.11582348
title: Complete Data Set, Raman spectra for strains A/Nebraska/14/2019 and A/Hawaii/47/2014 collected at 785 nm and 532 nm

description: This data contains Raman spectra for two different strains of Influenza A;  A/Nebraska/14/2019 which is an H1N1 subtype and A/Hawaii/47/2014 which is an H3N2 subtype. There contains data for 10 separate growth cultures (i.e. 10 files) for each subtype, collected at two different wavelengths; 785 nm and 532 nm. This makes a total of 40 files. Each file has 400 spectra collected. All spectra were collected at 100x with a 5 second accumulation time.
DOI: 10.5281/zenodo.12545878
title: Data for "Metal Ions Guide the Production of Silkworm Silk Fibers"
DOI: 10.5281/zenodo.12793317
title: Vertical Crustal Deformation due to Viscoelastic Earthquake Cycles at Subduction Zones: Implications for Nankai and Cascadia

description: This repository includes the vertical GNSS data shown in the paper:

Li, S.,  Chen, L.,  2024. "Vertical Crustal Deformation due to Viscoelastic Earthquake Cycles at Subduction Zones: Implications for Nankai and Cascadia " submitted to Journal of Geophysical Research solid earth.
DOI: 10.5281/zenodo.3268500
title: PPG Diary Pilot Study 1 Data

description: The following data are provided from the PPG Diary 1 Study. <em>Definition: PPG - photoplethysmogram</em> <strong>Versions:</strong> <strong>Preliminary Subsets v.0.1: </strong>Three subsets are provided: (i) a one-hour recording of simultaneous red and infrared PPG signals; (ii) a one-minute recording of infrared PPG signal; (iii) a recording of a single pulse wave, acquired using infrared PPG. Each recording was acquired from the same subject during sleep. The recordings are provided in Matlab ® format. <strong>v.1.1 - Complete Dataset: </strong>The complete dataset is provided in the Matlab ® file named <em>ppg_diary_pilot_conv_data.mat</em>. The contents of the file are described in the README file named <em>ppg_diary_pilot_study_data_README.txt </em>. In addition, the Matlab ® codes used to analyse the dataset are also provided: <em>ppg_diary_pilot1_analysis.m</em> (which is the main function), and <em>PulseAnalyse </em>(v.1.2beta, which is called by the main function). Instructions on how to use the codes to analyse the dataset are provided here. <strong>v.1.2 - including the Submitted Manuscript</strong>: The submitted manuscript is available here. <strong>Further Information</strong> Further information of the PPG Diary Project, and the data provided here, is available at: https://peterhcharlton.github.io/ppg-diary/
description: Published to accompany the publication: Charlton P.H. et al, "Acquiring wearable photoplethysmography data in daily life: the PPG Diary Pilot Study' [under review]
DOI: 10.5281/zenodo.7796773
title: The Role of Proteomics Analysis in Carcinogenesis in a Rat Mammary Cancer Model Induced by DMBA (7,12-dimethylbenz(α)anthracene)

description: The dataset consists of raw data on protein concentration from a Nanodrop Spectrophotometer and raw data on protein molecular weight from SDS-PAGE
DOI: 10.5281/zenodo.806176
title: Rest EEG recordings in healthy subjects during wakefulness, sleep and anesthesia with ketamine, propofol, and xenon

description: <strong>Resting state EEG recording in healthy subjects:</strong> <strong>N = 5 during wakefulness eyes open and ketamine anesthesia;</strong> <strong>N = 5 during wakefulness eyes closed and propofol anesthesia;</strong> <strong>N = 5 during wakefulness eyes closed and xenon anesthesia;</strong> <strong>N = 4 during sleep (stage N3).</strong>
DOI: 10.5281/zenodo.8341017
title: On the Helpfulness of Answering Developer Questions on Discord with Similar Conversations and Posts from the Past

description: Replication Package for "On the Helpfulness of Answering Developer Questions on Discord with Similar Conversations and Posts from the Past".
DOI: 10.5519/jg7i52dg
title: Release of data added to the PREDICTS database (November 2022)

description: This dataset comprises 1,040,752 measurements, collated from 9,544 sampling locations in 46 countries and representing 10,635 species. The data was collated from 115 existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database was assembled as part of the PREDICTS project - Projecting Responses of Ecological Diversity In Changing Terrestrial Systems; https://www.nhm.ac.uk/our-science/our-work/biodiversity/predicts.html This release is an addition to the data presented with The 2016 release of the PREDICTS database (available on the NHM Data Portal: https://data.nhm.ac.uk/dataset/the-2016-release-of-the-predicts-database).
DOI: 10.5525/gla.researchdata.1362
title: Hiding images in noise

description: The analysis code and data for the paper 'Hiding images in noise'. The data comprises of 1 second acquisitions from a gated intensified camera for both the correlated and uncorrelated measurements.
DOI: 10.6084/m9.figshare.21762659
title: csnTm_par_lowT.txt

description: Fitted parameters of temperature dependent normalized thulium cross-section spectra
DOI: 10.6084/m9.figshare.22591771
title: Supplementary Material for: Emergence of Spatial Scales and Macroscopic Tissue Dynamics in Active Epithelial Monolayers

description: Migrating cells in tissues are often known to exhibit collective swirling movements. In this paper, we develop an active vertex model with polarity dynamics based on contact inhibition of locomotion (CIL). We show that under this dynamics, the cells form steady-state vortices in velocity, polarity, and cell stress with length scales that depend on polarity alignment rate (ζ), self-motility (<i>v</i><sub>0</sub>), and cell-cell bond tension (λ). When the ratio λ/<i>v</i><sub>0</sub> becomes larger, the tissue reaches a near jamming state because of the inability of the cells to exchange their neighbors, and the length scale associated with tissue kinematics increases. A deeper examination of this jammed state provides insights into the mechanism of sustained swirl formation under CIL rule that is governed by the feedback between cell polarities and deformations. To gain additional understanding of how active forcing governed by CIL dynamics leads to large-scale tissue dynamics, we systematically coarse-grain cell stress, polarity, and motility and show that the tissue remains polar even on larger length scales. Overall, we explore the origin of swirling patterns during collective cell migration and obtain a connection between cell-level dynamics and large-scale cellular flow patterns observed in epithelial monolayers.
DOI: 10.6084/m9.figshare.24440608
title: Sedimentary organic nitrogen isotope records in the Northern South China Sea

description: The following supplementary datasets consist of informations of sedimentary organic carbon, biogenic silica and total and organic nitrogen and their stable isotopes collected in a well-dated sediment core (NH07) collected from the northern South China Sea in the summer of 2017.<br>
DOI: 10.6084/m9.figshare.25836802.v1
title: Combined Data for Zhang JZ et al. Nature Chemical Biology

description: Raw data for Zhang JZ et al. Nature Chemical Biology
DOI: 10.6084/m9.figshare.26246150
title: Supplementary Material for: THE ROLE OF IMMUNOMODULATORY THERAPY WITH OXIRIS IN COVID 19 WITH RENAL FAILURE AND IMMUNE DYSFUNCTION.

description: INTRODUCTION: The main objective of this study is to evaluate the impact of hemoadsorption on the elimination of inflammatory mediators.
METHODS: A prospective, bicenter, observational cohort study was conducted between March 2020 and February 2022 to explore the immunomodulatory response, demographic and clinical characteristics of individuals with COVID-19 admitted to the ICU with severe acute respiratory failure and in need of CRRT with Oxiris® with or without AKI.
RESULTS: 64 patients were analyzed. Statistically significant differences were observed between exposed and unexposed groups, regarding levels of D-dimer -15614 (24848.9) vs -4136.5(9913.47) (p .031, d:1.59, 95% CI -21830, -1126). An increase in PCT was observed 0.47(2.08) vs -0.75(2.3) (p .044 95% CI 0.03,2.44). No differences were found in a decrease in CRP -4.21(7.29) vs -1.6(9.02) (p .22) nor in the rest of inflammatory parameters fibrinogen, IL-6, ferritin, lymphocytes, and neutrophils. Subgroup analysis in patients exposed to therapy also showed a significant decrease in D-Dimer of 55% from baseline; 6000 (1984.5-277750) pre-therapy vs 2700 (2119.5-6145) (95% CI -23000, -2489) post-therapy with a strong effect size (p .001, d:0.65). 
CONCLUSION: The hemoadsorptive therapy in COVID 19 was associated with a significant decrease in D-dimer parameters without showing decreases in the rest of the clinical, inflammatory parameters and severity scales analyzed.
DOI: 10.1594/pangaea.418185
title: Bathymetry along track line of HAKUHO MARU cruise 49HH915_1
DOI: 10.18739/a2707wp16
title: Yukon-Kuskokwim Delta fire: thaw depth, soil temperature, and point-intercept vegetation, Yukon-Kuskokwim Delta Alaska, 2015-2016

description: The summer of 2015 was an extraordinary year for fire in the Arctic, including in the Yukon-Kuskokwim Delta, presaging a future where tundra and boreal fire is far more common. Remarkably, the area burned in the YK Delta in 2015 exceeds the total area burned from 1940-2014 combined. The response of the YK Delta in the first year post-fire will set the stage for longer-term changes in delta carbon storage and transport among tundra, aquatic and marine systems, and to the atmosphere. Quantifying carbon export and understanding the immediate ecosystem response to fire is critical because long-term recovery is, to a considerable degree, dependent on short-term responses. A major question that this research will address is how fire influences the amount and form of carbon transported from delta ecosystems seasonally and in the first year following fire. Ultimately, these results will inform long-term trajectories of the vulnerability and fate of delta carbon pools. This research will significantly improve our understanding of the role of fire in the loss of both modern and ancient carbon from arctic river deltas, which contain &gt;10% of the Arctic’s massive permafrost carbon store. Arctic river deltas are hotspots for carbon storage, occupying &lt;1% of the pan-Arctic watershed but containing &gt;10% of carbon stored in arctic permafrost. They are also heterogeneous mosaics of linked terrestrial and aquatic ecosystems, and are susceptible to changes in land, river, and marine systems. The vulnerability of carbon stored in arctic river deltas is a major unknown and is critically important as climate warming and increasing fire frequency may make this carbon vulnerable to transport to aquatic and marine systems and to the atmosphere. The goal of this proposal is to examine the immediate effects of fire on carbon storage in the Yukon-Kuskokwim Delta and exchange between terrestrial and aquatic components of the Delta. By extension this work will yield critical insights into how the carbon balance of deltas in the arctic system will change over the coming decades as warming continues and fire frequency increases. This dataset includes thaw depth measurements from 3 timepoints, paired with soil temperature, air temperature, organic layer depth, and point-intercept measurements of vegetation cover.
DOI: 10.18739/a29s1kk6t
title: Yukon-Kuskokwim Delta fire: vegetation biomass, Yukon-Kuskokwim Delta Alaska, 2016

description: The summer of 2015 was an extraordinary year for fire in the Arctic, including in the Yukon-Kuskokwim Delta, presaging a future where tundra and boreal fire is far more common. Remarkably, the area burned in the YK Delta in 2015 exceeds the total area burned from 1940-2014 combined. The response of the YK Delta in the first year post-fire will set the stage for longer-term changes in delta carbon storage and transport among tundra, aquatic and marine systems, and to the atmosphere. Quantifying carbon export and understanding the immediate ecosystem response to fire is critical because long-term recovery is, to a considerable degree, dependent on short-term responses. A major question that this research will address is how fire influences the amount and form of carbon transported from delta ecosystems seasonally and in the first year following fire. Ultimately, these results will inform long-term trajectories of the vulnerability and fate of delta carbon pools. This research will significantly improve our understanding of the role of fire in the loss of both modern and ancient carbon from arctic river deltas, which contain &gt;10% of the Arctic’s massive permafrost carbon store. Arctic river deltas are hotspots for carbon storage, occupying &lt;1% of the pan-Arctic watershed but containing &gt;10% of carbon stored in arctic permafrost. They are also heterogeneous mosaics of linked terrestrial and aquatic ecosystems, and are susceptible to changes in land, river, and marine systems. The vulnerability of carbon stored in arctic river deltas is a major unknown and is critically important as climate warming and increasing fire frequency may make this carbon vulnerable to transport to aquatic and marine systems and to the atmosphere. The goal of this proposal is to examine the immediate effects of fire on carbon storage in the Yukon-Kuskokwim Delta and exchange between terrestrial and aquatic components of the Delta. By extension this work will yield critical insights into how the carbon balance of deltas in the arctic system will change over the coming decades as warming continues and fire frequency increases. This dataset includes vegetation harvested the summer 1 year after the fires. Vegetation was sorted to species or functional group, dried and weighed for biomass.
DOI: 10.18739/a2fj29d12
title: Polaris Project 2017: Vegetation biomass, carbon, and nitrogen, Yukon-Kuskokwim Delta, Alaska

description: This project is integrating scientific research in the Arctic with education and outreach, with a strong central focus on engaging undergraduate students and visiting faculty from groups that have had little involvement in Arctic science to date. The central element of the project is a month-long research expedition to the Yukon River Delta in Alaska. The expedition provides a deep intellectual and cultural immersion in the context of an authentic research experience that is paramount for "hooking" students and keeping them moving along the pipeline to careers as Arctic scientists. The overarching scientific issue that drives the research is the vulnerability and fate of ancient carbon stored in Arctic permafrost (permanently frozen ground). Widespread permafrost thaw is expected to occur this century, but large uncertainties remain in estimating the timing, magnitude, and form of carbon that will be released when thawed. Project participants are working in collaborative research groups to make fundamental scientific discoveries related to the vulnerability of permafrost carbon in the Yukon River Delta and the potential implications of permafrost thaw in this region for the global climate system. This data set includes vegetation biomass, %C, and %N results from the 2017 expedition.
DOI: 10.18739/a2q23r08g
title: Polaris Project 2017: Soil fluxes, carbon, and nitrogen, Yukon-Kuskokwim Delta, Alaska

description: This project is integrating scientific research in the Arctic with education and outreach, with a strong central focus on engaging undergraduate students and visiting faculty from groups that have had little involvement in Arctic science to date. The central element of the project is a month-long research expedition to the Yukon River Delta in Alaska. The expedition provides a deep intellectual and cultural immersion in the context of an authentic research experience that is paramount for "hooking" students and keeping them moving along the pipeline to careers as Arctic scientists. The overarching scientific issue that drives the research is the vulnerability and fate of ancient carbon stored in Arctic permafrost (permanently frozen ground). Widespread permafrost thaw is expected to occur this century, but large uncertainties remain in estimating the timing, magnitude, and form of carbon that will be released when thawed. Project participants are working in collaborative research groups to make fundamental scientific discoveries related to the vulnerability of permafrost carbon in the Yukon River Delta and the potential implications of permafrost thaw in this region for the global climate system. This data set includes soil cores, analyzed for soil moisture, pH, ammonium, nitrate, %C, and %N from the 2017 expedition. Some cores are also paired with field fluxes or pore gas samples of methane and carbon dioxide.
DOI: 10.25345/c53j67
title: MassIVE MSV000086828 - Halo-WDR76_Purification_inWDR76KO_DSSO-XL-MS
title: Halo purified WDR76 from a stable cell line in WDR76 KO background. DSSO crosslinking performed in eluted samples. Data collected using ms3 method. Data searched using Proteomics Discoverer 2.4 with XlinkX.