cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/hvvvfd
title: Heterobasidion annosum and Armillaria ostoyae significantly reduce radial growth during three years before stem death in infected Pinus pinaster

description: The dataset "Table trees.txt" consists in 9 columns and 161 rows. The columns are: --- “LineNumber” can be used to keep track of the original sort --- “Site” is the name of the study site “Sanguinet” or “Mano” --- “Pathogen” is the name of the pathogen that infected the tree --- “TreeCategory” gives the tree’s health status --- “Tree” is the name of the tree --- “LYRG” is the date of the last year of radial growth --- “XL93” is the longitude in meters in Lambert93 --- “YL93” is the latitude” in meters in Lambert93 --- “GBH” is the circumference at breast height in cm --- “YearCanopyDeath” is the year or semester when there are no more green needles in the crown NA means no data available The dataset "Table tree rings" is composed of 5 columns and 3719 lines. --- “Site” is the name of the study site “Sanguinet” or “Mano” --- “Tree” is the name of the tree --- “Year” is the year of tree-ring growth --- “BA” is the basal area of the stem at breast height in cm2 --- “BAI” is the Basal Area Increment at breast height in cm2
DOI: 10.57745/ihkgre
title: Hydrological simulation datasets for eight flash flood events in southeastern France

description: This dataset provides the hydrological simulations of eigth flash floods events that occurred in southeastern Fance between 2019 and 2021. These simulations were performed using the SMASH model, in a "lag 0" version, i.e. without routing scheme. The spatiotemporal steps are (1km, 15min). The eight events were reproduced using four different QPFs (Quantitative Precipitation Forecasts): - The constant future rain, which consists in using the observed hyetogram until the time of beginning of forecast (trun) complemented until the lead-time with the rainfall amount observed between (trun) and (trun - 15min). - AROME-NWC, which is a numerical weather prediction model adapted to short-range. - PIAF, which is a data fusion product blending AROME-NWC and extrapolations of the radar-based QPE (Quantitative Precipitation Estimate) PANTHERE. - PIAF-EPS, which is an experimental ensemble version of PIAF, consisting of 17 members. The dataset also provides the PANTHERE QPE hydrographs for the duration of each event. Finally, the dataset provides reference discharge quantiles on the affected areas, corresponding to return periods of 2, 5 and 10 years. They were obtained by running the SMASH model for a long and continuous period (15 years), and by adjusting a Gumbel distribution to the corresponding annual maximum series. Readme files are available in each zip directories.
DOI: 10.57745/iuj40p
title: Selection of total-RNAseq reads for circRNA characterization in cattle

description: To provide a global and rapid characterization of circular RNAs present in bovine tissues, we selected chimeric reads from total-RNAseq of 117 samples originating from 26 tissues.
DOI: 10.57745/ixp1pr
title: Data extraction form for "Multi-attribute temporal descriptive methods in sensory analysis applied in food science: a systematic scoping review."

description: List of articles included in the scoping review, with associated information (consolidated version to come).
DOI: 10.57745/j1fbha
title: Database of the autopsy results of the piers of the île de Ré bridge in France (2016-2017)

description: This database of autopsy results of 6 piers of the île de Ré bridge in France was obtained in 2016-2017 within the DéCoF-Ré project.
DOI: 10.57745/jaao8r
title: Supplementary data - Genomic and phenomic predictions help capture low-effect alleles promoting seed germination in oilseed rape in addition to QTL analyses

description: This dataset corresponds to the Supplementary data, to the BLUEs of phenotypic data, as well as to the raw NIRS and genotypic data attached to the original article 'Combining QTL detection with genomic and phenomic predictions to capture favorable alleles involved in seed germination in oilseed rape (Brassica napus L.)'. This dataset contains the five following files: Readme.docx, ESM.xlsx, Phenotypes.csv, Genotypes.csv and NIRS.csv.
DOI: 10.57745/mnyrfq
title: Horse nemabiome benchmark

description: This repository contains codes and input data used to benchmark the metabarcoding of cyathostomin (horse parasites) using the internal transcribed spacer 2 region, and to test the predictive ability of an amplicon located within the COI mitochondrial gene.
DOI: 10.57745/ispfkw
title: Quality, Ethics, Gender Equality Plan, IPR and Risk Management Plan

description: Deliverable 7.1 for Project "eco2adapt - Ecosystem-based Adaptation and Changemaking to Shape, Protect and Maintain the Resilience of Tomorrow’s Forests." Funded from the EU Horizon Europe Programme under grant agreement number 101059498.
DOI: 10.57745/j50s0o
title: RPG complété 2018 département 29

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 29, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/jnxjwb
title: Proteolysis Lipolysis

description: Proteolysis and lipolysis data
DOI: 10.57745/jtbttf
title: Ecophysiological and fuel moisture content data from an experimental drought study on Pinus halepensis Mill. and Quercus ilex L.

description: Canopy fuel moisture content (CFMC), which represents the water-to-dry mass ratio in leaves and fine twigs within the canopy is a major factor of fire danger across ecosystems worldwide. CFMC is determined by the fuel moisture content of living (LFMC) and dead foliage (DFMC), with their contributions weighted according to the proportion of foliage mortality within the canopy. Understanding how CFMC is affected during extreme drought is essential for effective wildfire planning. This dataset contains variables measured during a drought experiment conducted on seedlings of two Mediterranean species: Aleppo pine (Pinus halepensis Mill.) and Holm oak (Quercus ilex L.). Throughout the drought experiment and after rewatering, we monitored CFMC, LFMC, the proportion of foliage mortality in the canopy, along with other ecophysiological variables including plant transpiration, soil water content and leaf water potentials. The dataset comprises two files: 'data_trees' contains recorded values of moisture content and eco-physiological variables for the trees, while 'data_litter' contains recorded values of litter moisture content. Furthermore, the publication includes two text files detailing the variable names and units.
DOI: 10.57745/kmgodh
title: Online survey lentil consumer practices 2022

description: The dataset includes the 607 responses provided to an online survey on lentil consumer practices in France in 2022. The 2nd file is a document including the questions asked: type of lentil meals, frequency of consumption, type of preparation, storage duration once cooked, etc. There were also general questions on age, gender and region. The survey may be used to get information on what type of lentils is consumed (and how often) in France, how it is cooked and stored. This information may be then plugged into a food safety risk assessment to refine, for instance, the consumer exposure model.
DOI: 10.57745/ledgyb
title: 3D support for rockwool cube

description: This data are 3D plan of a support for rockwool cube (4cm sided). The support solves the problem of the instability of small rockwool cubes for the individual cultivation of tall plants. This is an alternative to growing plants in small pots with potting soil.
DOI: 10.57745/lepjcs
title: Supplementary Information - Half of global agricultural soil phosphorus fertility derived from anthropogenic sources

description: This dataset contains the supplementary data for the paper "Half of global agricultural soil phosphorus fertility derived from anthropogenic sources" that has been send for revision to the Nature Geoscience Journal.
DOI: 10.57745/mehnom
title: Analyse_3_locus_catalog_and_count

description: locus_catalog_and_count
DOI: 10.57745/mgvodt
title: Electrospun Polybutylene Succinate Coatings for Sustainable Cardboard Packaging: Structure-Property Relationships

description: Dataset associated to the article : "Electrospun Polybutylene Succinate Coatings for Sustainable Cardboard Packaging: Structure-Property Relationships". The dataset contains : &gt; raw results obtained for all considered characterization, namely: Oxygen barrier properties, tensile properties, thicknesses and structures, and transparency and opacity. In each file, the name of the sample, of the replicate, and the corresponding results are collected. Files names : - RESULTS_Oxygen barrier properties - RESULTS_Tensile properties - RESULTS_Thicknesses and structures - RESULTS_Transparency and opacity &gt; SEM images of the different morphologies of electrospun PBS (beaded fiber, bead, fiber), which is mentioned in the title of the figure. “10µm” and “50µm” refer to the scale of the SEM image. Files names : - SEM_Beaded fibers_10µm and _50µm - SEM_Beads_10µm and _50µm - SEM_Fibers_10µm and _50µm &gt; raw SEM images obtained depending on the annealing temperature (X =[100;140]), which is mentioned in the title of the figure. “PBS CC” refers to annealed PBS-coated cardboards, “PBS film” refers to the annealed electrospun PBS mat. “Cross section” and “Surface” refer to the type of SEM observation of the sample. Files names : - SEM_PBS CC surface_TX - SEM_PBS film cross section_TX - SEM_PBS film surface_TX &gt; the MatLab Code used to assess the thickness of each layer for the produced PBS-coated cardboard File name : - Thickness calculations_Code
DOI: 10.57745/hn6o85
title: Données anonymes concernant les candidatures au premier prix science ouverte du logiciel libre de la recherche

description: Quelques informations anonymes concernant les 129 candidatures au premier prix science ouverte du logiciel libre de recherche.
DOI: 10.57745/iosbw6
title: PROspective - soil physicochemical dataset

description: Soil physicochemical dataset from the PROspective's long-term field experiment. // The PROspective's field experiment is a randomised block experiment divided into 2 sub-devices “With_N” and “Without_N” including 24 plots of 10 m × 9 m in 4 blocks of replicates and a fifth block devoted to following of the nitrogen dynamic with bare plots or control plots without mineral fertilization. The following organic waste products are randomly distributed within each block: Sewage sludge (SLU), Co-compost of sewage sludge with green waste and wood chips (GWS), Co-compost of the home-sorted fermentable fraction of municipal solid waste and green waste, also called biowaste compost (BIOW), Farmyard manure from a dairy farm (FYM), Compost of farmyard manure (CFYM), No organic amendment (control, or CN). // Two phases were carried out during 2000-2019 as presented in the table in attached file (PROspective_Experimental_treatments_FR_EN), with the treatments randomly distributed in the 2 sub-devices; with additional biowaste digestate (DIG) applied from 2015 in the sub-device “without_N.
DOI: 10.57745/ipmulw
title: RPG complété 2021 Région Rhône-Alpes

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région (ancienne région) Rhône-Alpes (01, 07, 26, 38, 42, 69, 73, 74). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/itbmet
title: Replication data for the article “Urban tree diversity fosters bird insectivory despite a loss in bird diversity with urbanization”.

description: We conducted a study in Montreal, Canada, across 97 trees within 24 urban experimental plots to examine bird diversity, avian predation attempts on artificial prey, and the effects of bird exclusion on insect herbivory. We also evaluated local tree diversity and urbanization levels through tree density, impervious surfaces, anthropogenic noise, and human population density. Our goal was to understand how insectivorous bird communities change along the urban gradient, explore their cascading effects on predation and herbivory control functions, and evaluate whether urban tree diversity can help mitigate the negative impacts of urbanization on the trophic cascade involving birds, herbivorous insects, and trees.
DOI: 10.57745/jkig1x
title: Dataset : "Proprioception drives tension wood formation to control autotropicstraightening movements in trees"

description: Data used in the analysis presented in the paper entitled: "Proprioception drives tension wood formation to control autotropicstraightening movements in trees" English
DOI: 10.57745/jtnci8
title: COOPER: flood vulnerability modeling of a cooperative wine system

description: The COOPER model is built to serve as a virtual laboratory for the ex-ante estimation of the impacts of a wide variety of flooding events on a cooperative wine system. The COOPER model reproduces the functioning of a cooperative wine system seen as a wine production system linking economic entities (a cooperative and wineries). The system is composed of material entities of three different natures (parcels, farm buildings, cooperative buildings) that interact with each other according to the organizational rules of the cooperative system and of each of the wineries. The production of the system depends on the performance of the material entities and on the possible disorganization propagated by the interaction between these entities. The performance of the entities varies according to their state, which can evolve "naturally" (aging of the plant material for example), according to the occurrence of floods at the place where they are located (damage or destruction), and the actions of the economic entities (repair or investment). The COOPER model makes it possible to evaluate the impacts of flooding and to trace the origin, persistence and duration of disturbances within the system. It allows to observe the state and performance of each entity at any time. It also allows to produce impacts in the economic sense (vision without double counting) or in the financial sense (vision from the point of view of a particular economic entity). Written in Netlogo v6.2.0
DOI: 10.57745/jvgcq1
title: Data for the article "Forest management and former land use have no effect on soil fungal diversity in uneven-aged mountain high forests" published in Annals of Forest Science

description: Data used in the article "Forest management and former land use have no effect on soil fungal diversity in uneven-aged mountain high forests". This article is not yet published.
DOI: 10.57745/kfwpni
title: Dung beetles, but not rodents, contribute to Brown Bear faeces removal, disaggregation and secondary seed dispersal.

description: Seed dispersal by endozoochory is essential to plant dynamics, but once released in the faeces, the seeds face a hostile environment that is not always favourable to germination. Indeed, faeces may contain inhibitors, high seed density and be densely structured. However, faeces visitors such as vertebrates and invertebrates may play an essential role in secondary seed dispersal (SSD) and limit the chemical and physical constraints of the faeces. In this study, we designed a field experiment in the French Pyrénées mountains to disentangle the relative role of vertebrate and invertebrate on Brown Bear (Ursus arctos) faeces removal, disaggregation and secondary dispersal of small and medium-sized seeds. For this purpose, we used 30 fresh faeces and separated each of them into three sub-samples submitted to different treatments allowing total access to any visitor, access restricted to invertebrates and no access respectively. We inserted eight raspberry (Rubus idaeus) and five blueberry (Vaccinium myrtillus) seeds in each sub-sample to assess SSD. In parallel, we used camera and pitfall traps to catch vertebrate and invertebrate visitors, respectively. After ten days we weighted the fecal matter removed, counted the remaining seeds and assessed the faeces disaggregation based on visual examination and objective criteria. We observed a significant effect of invertebrates on faeces removal, disaggregation and secondary dispersal of both seed species. Vertebrates did not visit the faeces. Dung beetles caught in pitfall traps appear as the main disaggregation agent in this area. We also pinpointed that diet composition and structure of Brown Bear faeces affect their disaggregation and subsequent SDD. Our study in a temperate mountainous area identifies dung beetles as key agents in the disaggregation and secondary dispersal of small and medium-sized seeds. Diet composition and the fecal matter trapping the seeds affect seed fate by modulating dung beetle activity. By releasing variable fecal contents, omnivorous primary dispersal vectors have an even more complex effect on seed fate than expected.
DOI: 10.57745/ltttbk
title: A 3D morpho-space of sepal geometry reveals the importance of organ curvature (data set)

description: This repository contains raw image data, the extracted sepal contours, and the measurement results, used for the manuscript Battu et al. We consider different mutants in Col-0 and Ler background, grow them and their corresponding wild type in the same condition (on soil at 20°C,...) We refer to the manuscript Battu et al. for a more detailed description of the plant material, methods, and measurements obtained. The dataset contains original sepal images, the segmented images, as well as measured data for 15 mutants and their corresponding control wildtype, summarized in 12 directories corresponding to 12 experiments. The measured data for a genotype named "mutant" is in a file named "dataset_normalized_mutant.csv", in which all lengths are given in micrometers.
DOI: 10.57745/m119iv
title: A Review of French PhD Theses on Sustainable Development

description: The dataset was produced for a scientometric study on French PhD theses in the field of sustainable development, presented at the Twenty-Fifth International Conference on Grey Literature "Confronting Climate Change with Trusted Grey Resources", OBA Congres, November 13-14, 2023, Oosterdokskade, Amsterdam, The Netherlands. We reused a dataset with metadata of 431,997 theses ("Thèses soutenues en France depuis 1985") produced by ABES and available as public open data at the following address: https://www.data.gouv.fr/fr/datasets/theses-soutenues-en-france-depuis-1985/ The ABES dataset was downloaded in csv format on August 16, 2023. Our dataset is a subsample of the ABES dataset; it contains 3,467 theses which represent 0.8% of the total number of theses in the ABES file. The purpose of the study is to assess the French PhD theses on sustainable development, with two objectives: to give a scientometric overview on the French PhD landscape in the field of sustainable development; and to show how PhD theses (as a major part of grey literature) and related tools can be helpful for the scientometric study of science. The review is based on data from the French national portal theses.fr. The results of our study provide a detailed review of the French PhD research on sustainable development from 1985 to 2022, including the main French research universities in the field of sustainable development and the most eminent academic scholars, the disciplinary distribution of the research on sustainable development, and the accessibility of the PhD theses on sustainable development (open science). The analysis of the year of defense will allow a longitudinal approach to these aspects. The dataset contains personal data from theses.fr This is the personal data notice of ABES regarding theses.fr https://www.theses.fr/donnees_personnelles « theses.fr, which includes personal information concerning in particular doctors, thesis directors and members of the defense jury, has been the subject of a normal declaration to the CNIL No. 1537454 v0. In accordance with the European General Data Protection Regulation (GDPR), you have the right to access, rectify and delete data concerning you, online on this site. To exercise this right, you can contact the ABES help desk. »
DOI: 10.57745/mkrj52
title: Sea lamprey (Petromyzon marinus L.) nests do not affect stream functionality despite increasing physical heterogeneity and macroinvertebrate diversity

description: The sea lamprey (Petromyzon marinus L.) can be considered an engineer species, as it can substantially modify the river beds where it spawns. Sea lampreys dig nests by removing large volumes of cobbles to create a pit, and leaving them in a mound downstream, thus altering local bed morphology. Previous studies showed that sea lamprey nest-building behaviour increases riverbed heterogeneity in depth and water velocity, which in turn promotes macroinvertebrate diversity. Based on that finding, our study aimed at assessing whether these changes promoted ecosystem functioning. We measured multiple ecosystem functions (biofilm accretion, phosphate and ammonium uptake, and litter breakdown) on the pit and the mound of 30 lamprey nests, as well as on 30 unmodified sites. In spite of the physical and biological heterogeneity, all processes measured showed no differences among sites, pointing towards a complex relationship between physical heterogeneity, biodiversity and ecosystem function.
DOI: 10.57745/mxjwzs
title: Diploïd genome assembly and annotation of Plasmopara viticola, INRA-PV221 strain

description: This dataset includes the diploid reassembly and re-annotation of the Plasmopara viticola genome (INRA-PV221 strain) using the PacBio long reads previously produced by Dussert et al. 2019, GBE (doi.org/10.1093/gbe/evz048). Archives can contain README files with important information. If you have any question, request or commentary, please email the dataverse contact.
DOI: 10.57745/nvxgwi
title: ÉTUDE BIBLIOGRAPHIQUE D’ESPÈCES VÉGÉTALES RÉSISTANTES À LA SÉCHERESSE ET UTILES POUR LA PLANTATION SUR LES TALUS RATP DANS LE BASSIN PARISIEN

description: Cette étude décrit une étude visant à établir une liste d'espèces végétales utiles pour la plantation sur les talus des voies ferrées légères à Paris et en région parisienne. L'étude s'articule en trois phases : la première phase de travail consiste à décrire le climat, des sols, des stress biotiques et abiotiques auxquels sont soumises les espèces végétales sur les talus de la RATP. La seconde, à récolter toutes les données possibles pour établir une liste d'espèces végétales adaptées aux périodes prolongées de chaleur et de sécheresse, avec un accent particulier sur les espèces pérennes et indigènes (pour éviter la possibilité que les espèces soient envahissantes). La troisième phase consiste à établir une liste d'espèces végétales avec les mêmes caractéristiques que celles décrites auparavant, mais à horizon 2100.
DOI: 10.57745/izxxgs
title: RPG complété 2018 département 25

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 25. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.57745/jopsfh
title: Relevés_Topo_Nivelle

description: Petit fleuve côtier de 39 km de long, la Nivelle est une rivière à saumon et sa population est suivi depuis le début des années 80. Afin d’estimer l’état de la population, chaque année, des suivis sont effectués sur le cours principal de la rivière et ses principaux affluents. Parmi ces suivis importants figurent les pêches d'abondance en septembre qui permettent, grâce à une connaissance fine de la topo de la rivière de pouvoir estimer la production de juvéniles sur l'année en cours. Ce dataset s'attache à rassembler les éléments d'informations acquis depuis le début des années 80 sur la topographie de la rivière sur lesquels s'appuient ces calculs et estimations de production de tacons sur le cours d'eau.
DOI: 10.57745/kfddbe
title: ICV de la banane de Guadeloupe et Martinique dans AGRIBALYSE®

description: Description de l’Inventaire du Cycle de Vie de la production de banane en Guadeloupe et Martinique dans AGRIBALYSE®