cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.66t1g1k93
title: 3DKMI: A MATLAB package to generate shape signatures from Krawtchouk moments and an application to species delimitation in planktonic foraminifera

description: The rapid and repeatable characterization of individual morphology has
 advanced automated taxonomic classification. The most direct study of
 evolutionary processes is, however, not from taxonomic description, but
 rather of the evolution of the traits that comprise individuals and define
 species. Repeatable signatures of individual morphology are crucial for
 analyzing the response to selection at scale, and thus tracking
 evolutionary trajectories through time and across species boundaries.
 Here, we introduce our 3DKMI – an open-source MATLAB package designed for
 the study of morphology using three-dimensional (3D) Krawtchouk moment
 invariants. The volumetric features derived from the 3D images remain
 stable under translation, scaling, and rotation and, for an image of size
 128x128x128 can be computed in less than 0.1 seconds. We applied our
 package as a case study on a collection of 300 X-ray computed tomography
 scans of planktonic foraminifera specimens across five species to (1)
 assess the invariance of the features under different transformations and
 (2) analyze morphological differences among species based on the extracted
 characteristics. We show that 3DKMI has the capacity to
 efficiently and repeatedly characterize the signatures of individual
 morphology. In the future, we hope that the 3D feature extraction
 technique 3DKMI will be widely applied to digital collections to advance
 research in ecology and evolution.
description: # 3DKMI: A MATLAB package to generate shape signatures from Krawtchouk
 moments and an application to species delimitation in planktonic
 foraminifera ## Description of the data and file structure We compiled a
 dataset of 250 individuals over five species from Ocean Drilling Program
 Site 925, located on the Ceara Rise in the Equatorial Atlantic, and
 Integrated Ocean Drilling Program Site U1313 within the North Atlantic
 gyre. The five species are *Globigerinoidesella fistulosa*, *Menardella
 exilis*, *Truncorotalia crassaformis*, *Sphaeroidinella dehiscens*, and
 *Trilobatus sacculifer*. For each individual, approximately 300 2D binary
 segmented image slices were obtained by CT scanning. As our emphasis was
 solely on morphology, we obtained binary volume representations of each
 specimen from these slices by applying some pre-processing steps such as
 cropping and segmentation. Global threshold values for segmentation are
 manually determined to remove background noise while preserving shape
 integrity. ## Code/Software * MATLAB Package:
 [https://github.com/krawtchouk/Krawtchouk-Moment-Invariants](https://github.com/krawtchouk/Krawtchouk-Moment-Invariants) * Quick-Start Guide: [https://krawtchouk.github.io/](https://krawtchouk.github.io/)
DOI: 10.5061/dryad.44j0zpcpj
title: Data from: Tunable anti-ambipolar vertical bilayer organic electrochemical transistor enable neuromorphic retinal pathway

description: Increasing demand for bio-interfaced human-machine interfaces propels the
 development of organic neuromorphic electronics with small form factors
 leveraging both ionic and electronic processes. Ion-based organic
 electrochemical transistors (OECTs) showing anti-ambipolarity (OFF-ON-OFF
 states) reduce the complexity and size of bio-realistic Hodgkin-Huxley(HH)
 spiking circuits and logic circuits.  However, limited stable
 anti-ambipolar organic materials prevent the design of integrated,
 tunable, and multifunctional neuromorphic and logic-based systems. In this
 work, a general approach for tuning anti-ambipolar characteristics is
 presented through assembly of a p-n bilayer in a vertical OECT (vOECT)
 architecture. The vertical OECT design reduces device footprint, while the
 bilayer material tuning controls the anti-ambipolarity characteristics,
 allowing control of the device’s on and off threshold voltages, and peak
 position, while reducing size thereby enabling tunable threshold spiking
 neurons and logic gates. Combining these components, a mimic of the
 retinal pathway reproducing the wavelength and light intensity encoding of
 horizontal cells to spiking retinal ganglion cells is demonstrated. This
 work enables further incorporation of conformable and adaptive OECT
 electronics into biointegrated devices featuring sensory coding through
 parallel processing for diverse artificial intelligence and computing
 applications. 
description: # Tunable Anti-Ambipolar Vertical Bilayer Organic Electrochemical
 Transistor enable Neuromorphic Retinal Pathway
 [https://doi.org/10.5061/dryad.44j0zpcpj](https://doi.org/10.5061/dryad.44j0zpcpj) In this dataset, we have incorporated the raw data collected during experiments forming the basis of all figures and experiments. The data was collected on Kiethey 26xx's using the open source software SweepMe! as described in the methods section of the work. ## Description of the data and file structure The dataset is available in txt file formats for each figure. The experimental conditions are detailed within the file name, as exampled by "1_BBL_PEDOT_var2_vOECT_25um_D1_Chip4_First_Cycle_ID1-1.txt", which involves the data collected from a BBL/PEDOT vOECT device with a W of 25um on chip 4. Alternatively, the data underlying each panel of figure can be found under the subsequent folder for the figure with txt files for each panel. ## Sharing/Access information n/a
DOI: 10.15468/dl.6k37vb
title: Occurrence Download

description: A dataset containing 31676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "IucnRedListCategory is LC",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 31676 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004072-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mfvax2
title: Occurrence Download

description: A dataset containing 31648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is LC",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 31648 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004074-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18406877
title: Table 1 in Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae)

description: Table 1. Cytogenetic data available for species of the genus Piabina. References: 1 - Portella et al. (1988); 2 - Peres et al. (2007); 3 - present study; (SP) São Paulo State; (MG) Minas Gerais State.
SpeciesLocalityKaryotype2nFNNORsRef.Piabina argenteaMogi Guaçu (SP)26m/sm+26st/a52-061Piabina argenteaSão Francisco (MG)08m+14sm+16st+14a5290022Piabina argenteaItatinga (SP)04m+22sm+10s+16a5288023Piabina argenteaBotucatu (SP)08m+18sm+18st+10a5298023Piabina argenteaBauru (SP)04m+24sm+10st+14a5290043Piabina anhembiSalesópolis (SP)08m+10sm+16st+18a5286023
description: Published as part of Pazian, Marlon Felix, Pereira, Luiz Henrique Garcia, Shimabukuru-Dias, Cristiane Kioko, Oliveira, Claudio & Foresti, Fausto, 2012, Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae), pp. 330 in Neotropical Ichthyology 10 (2) on page 330, DOI: 10.1590/s1679-62252012005000015, http://zenodo.org/record/18406833
DOI: 10.5281/zenodo.18406876
title: Table 1 in Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae)

description: Table 1. Cytogenetic data available for species of the genus Piabina. References: 1 - Portella et al. (1988); 2 - Peres et al. (2007); 3 - present study; (SP) São Paulo State; (MG) Minas Gerais State.
SpeciesLocalityKaryotype2nFNNORsRef.Piabina argenteaMogi Guaçu (SP)26m/sm+26st/a52-061Piabina argenteaSão Francisco (MG)08m+14sm+16st+14a5290022Piabina argenteaItatinga (SP)04m+22sm+10s+16a5288023Piabina argenteaBotucatu (SP)08m+18sm+18st+10a5298023Piabina argenteaBauru (SP)04m+24sm+10st+14a5290043Piabina anhembiSalesópolis (SP)08m+10sm+16st+18a5286023
description: Published as part of Pazian, Marlon Felix, Pereira, Luiz Henrique Garcia, Shimabukuru-Dias, Cristiane Kioko, Oliveira, Claudio & Foresti, Fausto, 2012, Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae), pp. 330 in Neotropical Ichthyology 10 (2) on page 330, DOI: 10.1590/s1679-62252012005000015, http://zenodo.org/record/18406833
DOI: 10.5281/zenodo.18406881
title: Table 2 in Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae)

description: Table 2. Table of genetic distance (K2P) to COI and CytB genes in one population of Piabina anhembi and three populations of P. argentea (Bauru, Itatinga and Botucatu) analyzed.
BauruItatingaPiabina anhembiBotucatuBauru0.001Itatinga0.0400.002Piabina anhembi0.0450.0240.001Botucatu0.0460.0280.0270.000
description: Published as part of Pazian, Marlon Felix, Pereira, Luiz Henrique Garcia, Shimabukuru-Dias, Cristiane Kioko, Oliveira, Claudio & Foresti, Fausto, 2012, Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae), pp. 337 in Neotropical Ichthyology 10 (2) on page 337, DOI: 10.1590/s1679-62252012005000015, http://zenodo.org/record/18406833
DOI: 10.5281/zenodo.18406880
title: Table 2 in Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae)

description: Table 2. Table of genetic distance (K2P) to COI and CytB genes in one population of Piabina anhembi and three populations of P. argentea (Bauru, Itatinga and Botucatu) analyzed.
BauruItatingaPiabina anhembiBotucatuBauru0.001Itatinga0.0400.002Piabina anhembi0.0450.0240.001Botucatu0.0460.0280.0270.000
description: Published as part of Pazian, Marlon Felix, Pereira, Luiz Henrique Garcia, Shimabukuru-Dias, Cristiane Kioko, Oliveira, Claudio & Foresti, Fausto, 2012, Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae), pp. 337 in Neotropical Ichthyology 10 (2) on page 337, DOI: 10.1590/s1679-62252012005000015, http://zenodo.org/record/18406833
DOI: 10.5061/dryad.h44j0zpvf
title: Range-wide salamander densities reveal a key component of terrestrial vertebrate biomass in eastern North American forests

description: Characterizing the population density of species is a central interest in
 ecology. Eastern North America is the global hotspot for biodiversity of
 plethodontid salamanders, an inconspicuous component of terrestrial
 vertebrate communities, and among the most widespread is the eastern
 red-backed salamander, Plethodon cinereus. Previous work suggests
 population densities are high with significant geographic variation, but
 comparisons among locations are challenged by lack of standardization and
 failure to accommodate imperfect detection. We present results from a
 range-wide monitoring network that accounts for detection uncertainty
 using systematic survey protocols and robust quantitative models. We
 analyzed mark-recapture data from 19 study areas across the range.
 Estimated salamander densities ranged from 1950 to 34300 salamanders/ha,
 with a median of 9965 salamanders/ha. We compare these results to previous
 estimates for P. cinereus and other abundant terrestrial vertebrates. We
 demonstrate that overall biomass of P. cinereus, a secondary consumer, is
 of similar or greater magnitude to widespread primary consumers such as
 white-tailed deer and Peromyscus mice, and 2-3 orders of magnitude greater
 than common high-biomass omnivorous species and other secondary consumer
 species. Our results add empirical evidence that P. cinereus specifically,
 and amphibians in general, are an outsized component of terrestrial
 vertebrate communities in temperate ecosystems.
description: # Range-wide salamander densities reveal a key component of terrestrial
 vertebrate biomass in eastern North American forests
 [https://doi.org/10.5061/dryad.h44j0zpvf](https://doi.org/10.5061/dryad.h44j0zpvf) Capture data from standardized arrays. ## Description of the data and file structure One file with all data:   * site: name of sampling area * year: year sampled * season: season of sampling * plot: identity of plot within site * trap: identity of coverboard within plot * mark: individual id * occasion: occasion of sampling * session: sampling session ## Code/Software Data are formatted for analysis in the R package: oSCR
DOI: 10.5683/sp3/8w24uy
title: Bumble Bee Diversity and Abundance Survey

description: The Ontario Ministry of Environment, Conservation and Parks as part of the Multi-
Media Monitoring study in 2015 initiated a project to characterize the number of
species of bumble bees and the relative abundances of these species in
southwestern Ontario. Follow-up surveys were conducted in 2016 , 2017 and
2018. Bumble bees were collected from 46 locations to compare the diversity of
bees occurring in agricultural and more natural areas. The data set includes:
sampling locations, including GPS coordinates and the county name; the number
of bumble bee individuals sampled at each site, which is listed for each species
and for each caste of a species (queen, worker, male); and other site details such
as the date of the site visit. The data can be used to determine species diversity
and relative abundance for the locations sampled. The data can also be used to
determine the more common species of bumble bees found in southwestern
Ontario and provide information for pollinator species diversity in southwestern
Ontario.
DOI: 10.15468/dl.qm78gb
title: Occurrence Download

description: A dataset containing 44589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-71.61459 43.30366,-71.00082 43.30366,-71.00082 43.9164,-71.61459 43.9164,-71.61459 43.30366))",
 "OccurrenceStatus is Present",
 "TaxonKey is Anseriformes"
 ]
}

 The dataset includes 44589 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004075-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18405079
title: Co-Viewing as a Tool to Enhance Emotional Communication in Dyads of People Living with Advanced Dementia and Their Caregivers in  Long-Term Care Settings

description: These data are shared for research and educational purposes.

Any commercial use is not permitted without prior written permission from the authors.



The file contains the raw data from the coding of communication behaviors in residents and the verbatim transcripts of semi-structured interviews with caregivers.
DOI: 10.5281/zenodo.18405078
title: Co-Viewing as a Tool to Enhance Emotional Communication in Dyads of People Living with Advanced Dementia and Their Caregivers in  Long-Term Care Settings

description: These data are shared for research and educational purposes.

Any commercial use is not permitted without prior written permission from the authors.



The file contains the raw data from the coding of communication behaviors in residents and the verbatim transcripts of semi-structured interviews with caregivers.
DOI: 10.21223/p3/ugvh3y
title: Dataset for: Utilization of Participatory Mapping Tools for the Assessment of Neglected and Underutilized Crop Species (NUS crops) Diversity in Ucayali, Peru

description: Dataset resulting from the application of participatory GIS mapping at the plot level among indigenous and mestizo households in Ucayali landscape, Peru, using ArcGIS Survey 123. The dataset contains field content, land use history and polygon data for 273 plots belonging to 221 households. Each plot was visited and participatory mapping tools were used to register the field, identifying the species and landraces of Amazonian roots and tubers classified as Neglected and Underutilized Crop Species (NUS). Here we report a dataset comprising eight different species: cassava (Manihot esculenta), sweet potato (Ipomoea batatas), aerial potato (Dioscorea bulbifera L.), achipa or chuin (Pachyrhizus tuberosus), pituca (Colocasia spp., Xanthosoma spp.), dale-dale (Calathea allouia), and sacha papa (Dioscorea bulbifera). Overall, the study captured the main characteristics of 683 landraces recorded across 273 mapped plots from 221 farmer households. The dataset is organized into 5 sections (i) household information, (ii) field information and land-use history, (iii) species names, (iv) landrace names, and (v) GIS coordinates of plots.
DOI: 10.15468/2a9zjh
title: A phylogenomic analysis of the genus Auyantepuia (Scorpiones: Chactidae) in French Guiana with the descriptions of two new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ythier, Eric, Chevalier, Johan, Moreau, Lucie, Murienne, Jérôme (2026): A phylogenomic analysis of the genus Auyantepuia (Scorpiones: Chactidae) in French Guiana with the descriptions of two new species. European Journal of Taxonomy 1034: 31-57, DOI: 10.5852/ejt.2026.1034.3147, URL: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/download/3147/14023Abstract. A review of the scorpions of the genus Auyantepuia (Scorpiones, Chactidae) in French Guiana is conducted using an integrative taxonomic approach combining molecular analysis performed on the mitochondrial genome of most species occurring in the territory and more traditional morphological analyses, leading to the descriptions of two new species, Auyantepuia kwata sp. nov. and Auyantepuia manmandinan sp. nov. Diagnoses are presented for all Auyantepuia species occurring in French Guiana and an identification key is proposed. The total number of recognized species in the genus Auyantepuia species is raised to 15.
DOI: 10.5061/dryad.kkwh70scn
title: Data from: The evolutionary history of Sinopoda spiders (Sparassidae: Heteropodinae): Out of the Himalayas and down the mountain slopes

description: Himalayan orogeny and consequent climatic changes, such as the
 strengthening of the Asian monsoon, are considered as two main
 drivers in shaping local biogeography. The
 mountainous Sinopoda spiders, which
 are widely distributed in East Asia and Southeast
 Asia and especially abundant in the mountains near the Himalayas,
 represent an ideal model lineage
 for investigating Himalayan
 biogeography. This is due to
 their high diversity, limited dispersal ability, and
 wide elevational distribution, ranging from sea
 level to 3500 meters. We investigated the evolutionary history of
 Sinopoda spiders, focusing on ecological, molecular, and
 morphological traits in relation to local geological events
 and fluctuations in Neogene (23.0–2.6 Ma) Asian monsoon
 patterns. Distribution modeling results show that extant
 Sinopoda spiders are sensitive to humidity fluctuations. They are mainly
 distributed in two distinct habitats: areas with moderate precipitation at
 high altitudes (relatively cold) and areas with high precipitation at low
 altitude (relatively warm). The biogeographical and elevation
 reconstruction analyses show that as the Himalayas rose and the Asian
 monsoon intensified Sinopoda spiders (Sparassidae: Heteropodinae)
 moved out of Himalayas (c. 18.1 Ma) and then ‘down’ the rising
 mountain slopes (c. 9.6 Ma). We then see a secondary return to the
 mountains (c. 3.3 Ma) as the severity of the East Asian monsoon decreased.
 We hypothesize that our ‘out of Himalaya’ dispersal pattern hypothesis
 will also apply to closely related spider groups with limited ballooning
 ability (e.g. Lycosidae, Thomisidae) or other organisms with low vagility
 (such as herpetofauna) that are sensitive to humidity and possess similar
 geographical distributions.
description: # The evolutionary history of *Sinopoda* spiders (Sparassidae:
 Heteropodinae): out of the Himalayas and down the mountain slopes
 [https://doi.org/10.5061/dryad.kkwh70scn](https://doi.org/10.5061/dryad.kkwh70scn) The dataset for divergence time analysis. DNA sequence data file: 54_taxa_Matrix_of_concatenated_DNA_sequences.nex: the aligned matrix of concatenated DNA sequences for divergence time analysis.
DOI: 10.5061/dryad.fttdz092b
title: DQ-1 Aerosols and Carbon Dioxide Lidar detects orbital data on power plant emissions

description: This dataset provides orbital enhancement data from June through December
 2022 from DQ-1 satellites detecting point source emissions from power
 plants worldwide. The dataset contains information on the longitude,
 latitude and column carbon dioxide concentration for 17 DQ-1 orbits
 through power plants, with the units corresponding to each variable
 described in the file, and is stored in nc file format.
description: Retrieval of <em>X<sub>CO2</sub></em> by
 differential absorption process and converted to column
 concentration. Quantifying emissions using Gaussian
 plume modeling.
description: # DQ-1 Aerosols and Carbon Dioxide Lidar detects orbital data on power
 plant emissions
 [https://doi.org/10.5061/dryad.fttdz092b](https://doi.org/10.5061/dryad.fttdz092b) This dataset provides orbital enhancement data from June through December 2022 from DQ-1 satellites detecting point source emissions from power plants worldwide. The dataset contains information on the longitude, latitude and column carbon dioxide concentration for 17 DQ-1 orbits through power plants, with the units corresponding to each variable described in the file, and is stored in nc file format. ## Description of the data and file structure All overpass information for this data is stored in an nc format file named: DQ-1 Detection Power Plant_20220601_20221231.nc. where the file contains 17 separate groups, each representing a single transit detection and containing three subgroups storing Lon, Lat, and Column_concentrations, respectively.
DOI: 10.15468/dl.72dutm
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Geometry POLYGON((-67 44.82,-65.5 44.82,-65.5 46,-67 46,-67 44.82))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "TaxonKey is Fringillidae",
 "Year 2013-2023"
 ]
}

 The dataset includes 91 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004077-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.