cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35077/act-old
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 707837795

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 707837795', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H18.06.358', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'38', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'707837795', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24409', Locations:'MFG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.25545/ek1eqa
title: SchNet Model Embedding Vectors of QM9 Atoms Labelled According to Functional Groups Designation

description: (see README file for same description but better formatting) Embedding vectors (Embs0-Embs127) for all atoms in the first 10k molecules (indexed by mol_index) in the QM9 [1] dataset, generated by a trained SchNet model [2], for 6 successive different interaction layers. Embedding vectors are annotated by atom type (atomic_number), xyz coordinates (coordx,coordy,coordz), interaction layer in the network (layer), atomization energy (atomizationE) of the associated atom is given, and labelled according to functional group assignment (ldalabel). Also contains the model which the embedding vectors were extracted from (model1). The hyperparameters of the trained SchNet model are: 128 filters, 128 atom basis functions, 50 Gaussians, 6 interaction layers, and an interaction cutoff of 50 Angstroms. Model was trained on 100k training points (molecules) and 10k validation points of QM9. Best_model contains the trained model weights and parameters so that they can be loaded. Split.npz file can reproduce the training/validation data split, and lastly the traininglog.csv file contains information about training and validation loss over training epochs. [1] L. Ruddigkeit, R. van Deursen, L. C. Blum, J.-L. Reymond, Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17, J. Chem. Inf. Model. 52, 2864–2875, 2012; https://doi.org/10.1021/ci300415d R. Ramakrishnan, P. O. Dral, M. Rupp, O. A. von Lilienfeld, Quantum chemistry structures and properties of 134 kilo molecules, Scientific Data 1, 140022, 2014. https://doi.org/10.1038/sdata.2014.22 [2] Schütt, K., Arbabzadah, F., Chmiela, S. et al. Quantum-chemical insights from deep tensor neural networks. Nat Commun 8, 13890 (2017). https://doi.org/10.1038/ncomms13890
DOI: 10.35077/act-orb
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 720835661

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 720835661', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H18.03.313', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'23', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'720835661', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24259', Locations:'STG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.35077/act-out
title: Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 720841879

description: Human neocortical neurons display diverse morphology, physiology and gene expression profiles. We use a method called Patch-seq, where these three data modalities are assayed simultaneously from the same neuron, to understand how the genetic profile of human neocortical neuron types corresponds to their morphological and electrophysiological phenotypes. This collection may contain image stacks (TIFF), reconstruction files in image space (.swc, µm), a transformed file (.swc, µm) oriented so that the y axis extends vertically towards the pia surface, and a marker file (.marker, µm) indicating nodes where dendrites were truncated (10), reconstruction was not continued (20), or surface of tissue was closest to soma (30).
description: https://www.protocols.io/view/patch-seq-recording-and-extraction-detailed-protoc-5qpvoyb2bg4o/v2, https://www.protocols.io/view/3d-reconstruction-of-neurons-in-vaa3d-v-3-36wgq5683gk5/v3
description: DATASET METADATA: title:'Neuron Morphology data in tiff stack format from Patch-seq experiments in human neocortex, Cell ID 720841879', GeneralModality:'cell morphology', Technique:'Patch-seq' SPECIMEN METADATA: LocalID:'H18.03.313', Species:'Human', NCBITaxonomy:'NCBI:txid9606', Age:'23', Ageunit:'years', Sex:'Female', OrganName:'Brain', SampleLocalID:'720841879', Atlas:'Ding, Song-Lin et al. “Comprehensive cellular-resolution atlas of the adult human brain.” The Journal of comparative neurology vol. 524,16 (2016): 3127-481. doi:10.1002/cne.24260', Locations:'STG' INSTRUMENT METADATA: MicroscopeType:'Brightfield', MicroscopeManufacturerAndModel:'Zeiss AxioImager Z2 microscope', ObjectiveImmersion:'Oil' IMAGE METADATA: xAxis:'NA', yAxis:'NA', zAxis:'NA', Number:'NA', displayColor:'NA', stepSizeX:'0.114', stepSizeY:'0.114', stepSizeZ:'0.44'
DOI: 10.5517/ccdc.csd.cc20r31y
title: CCDC 1869239: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r32z
title: CCDC 1869240: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r330
title: CCDC 1869241: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r341
title: CCDC 1869242: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r352
title: CCDC 1869243: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r363
title: CCDC 1869244: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r374
title: CCDC 1869245: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20r385
title: CCDC 1869246: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc228kc9
title: CCDC 1914850: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc228kdb
title: CCDC 1914851: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25hr4l
title: CCDC 2011129: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25hr5m
title: CCDC 2011130: Experimental Crystal Structure Determination

description: Related Article: Oliwia Matuszewska, Tommaso Battisti, Ruben R. Ferreira, Nicolas Biot, Nicola Demitri, Cécile Mézière, Magali Allain, Marc Sallé, Samuel Mañas-Valero, Eugenio Coronado, Elisa Fresta, Rubén D. Costa, Davide Bonifazi|2023|Chem.-Eur.J.|29|e202203115|doi:10.1002/chem.202203115
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc27f4vp
title: CCDC 2068222: Experimental Crystal Structure Determination

description: Related Article: Yuan Yue, Yuanhong Shu, Kaiqi Ye, Jingbo Sun, Cheng Liu, Shuting Dai, Liuyang Jin, Chengde Ding , Ran Lu|2023|Chem.-Eur.J.|29|e202203178|doi:10.1002/chem.202203178
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f22x
title: CCDC 2127718: Experimental Crystal Structure Determination

description: Related Article: Garrit Wicker, Rundong Zhou, Roland Schoch, Jan Paradies|2022|Angew.Chem.,Int.Ed.|61|e202204378|doi:10.1002/anie.202204378
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f23y
title: CCDC 2127719: Experimental Crystal Structure Determination

description: Related Article: Garrit Wicker, Rundong Zhou, Roland Schoch, Jan Paradies|2022|Angew.Chem.,Int.Ed.|61|e202204378|doi:10.1002/anie.202204378
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29f867
title: CCDC 2127908: Experimental Crystal Structure Determination

description: Related Article: Wei Wang, Fangqing Zhang, Yangbin Liu, Xiaoming Feng|2022|Angew.Chem.,Int.Ed.|61|e202208837|doi:10.1002/anie.202208837
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc287qgq
title: CCDC 2092793: Experimental Crystal Structure Determination

description: Related Article: Shuai Bi, Zixing Zhang, Fancheng Meng, Dongqing Wu, Jie-Sheng Chen, Fan Zhang|2022|Angew.Chem.,Int.Ed.|61|e202111627|doi:10.1002/anie.202111627
description: Related Article: Zixing Zhang|2021|CSD Communication|||
description: Related Article: Fancheng Meng, Shuai Bi, Zuobang Sun, Dongqing Wu, Fan Zhang|2022|Angew.Chem.,Int.Ed.|61|e202210447|doi:10.1002/anie.202210447
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29fj1b
title: CCDC 2128151: Experimental Crystal Structure Determination

description: Related Article: Yoshio Yano, Hidetaka Kasai, Yanyan Zheng, Eiji Nishibori, Yoshio Hisaeda, Toshikazu Ono|2022|Angew.Chem.,Int.Ed.|61|e202203853|doi:10.1002/anie.202203853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29fj2c
title: CCDC 2128152: Experimental Crystal Structure Determination

description: Related Article: Yoshio Yano, Hidetaka Kasai, Yanyan Zheng, Eiji Nishibori, Yoshio Hisaeda, Toshikazu Ono|2022|Angew.Chem.,Int.Ed.|61|e202203853|doi:10.1002/anie.202203853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29fj3d
title: CCDC 2128153: Experimental Crystal Structure Determination

description: Related Article: Yoshio Yano, Hidetaka Kasai, Yanyan Zheng, Eiji Nishibori, Yoshio Hisaeda, Toshikazu Ono|2022|Angew.Chem.,Int.Ed.|61|e202203853|doi:10.1002/anie.202203853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29fj4f
title: CCDC 2128154: Experimental Crystal Structure Determination

description: Related Article: Yoshio Yano, Hidetaka Kasai, Yanyan Zheng, Eiji Nishibori, Yoshio Hisaeda, Toshikazu Ono|2022|Angew.Chem.,Int.Ed.|61|e202203853|doi:10.1002/anie.202203853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29fj5g
title: CCDC 2128155: Experimental Crystal Structure Determination

description: Related Article: Yoshio Yano, Hidetaka Kasai, Yanyan Zheng, Eiji Nishibori, Yoshio Hisaeda, Toshikazu Ono|2022|Angew.Chem.,Int.Ed.|61|e202203853|doi:10.1002/anie.202203853
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.