cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21197350
title: Data from: Increased urinary creatinine during hibernation and day roosting in the Eastern bent-winged bat (<em>Miniopterus fuliginosus</em>) in Korea

description: This dataset comprises raw data, which includes the concentrations of creatinine and acetoacetate from bat urine samples, along with the body weights and forearm lengths of the sampled bats. However, it should be noted that size measurements were not obtained for all bats.
DOI: 10.6084/m9.figshare.21197350.v2
title: Data from: Increased urinary creatinine during hibernation and day roosting in the Eastern bent-winged bat (<em>Miniopterus fuliginosus</em>) in Korea

description: This dataset comprises raw data, which includes the concentrations of creatinine and acetoacetate from bat urine samples, along with the body weights and forearm lengths of the sampled bats. However, it should be noted that size measurements were not obtained for all bats.
DOI: 10.6084/m9.figshare.21197350.v1
title: Data from: Increased urinary creatinine during hibernation and day roosting in the Eastern bent-winged bat (<em>Miniopterus fuliginosus</em>) in Korea

description: This dataset is the raw data that includes creatinine and acetoacetate concentrations from bat urine samples, as well as body weights and forearm lengths of the sampled bats. However, not all bats were measured for size.
DOI: 10.25345/c5rb6wc74
title: MassIVE MSV000093649 - Automated workflow for BioID improves reproducibility and identification of protein-protein interactions
title: Proximity dependent biotinylation is an important method to study protein-protein interactions in cells, for which an expanding number of applications has been proposed. The laborious and time consuming sample processing has limited project sizes so far. Here, we introduce an automated workflow on a liquid handler to process up to 96 samples at a time. The automation does not only allow higher sample numbers to be processed in parallel, but also improves reproducibility and lowers the minimal sample input. Furthermore, we combined automated sample processing with shorter liquid chromatography gradients and data-independent acquisition to increase analysis throughput and enable reproducible protein quantitation across a large number of samples. We successfully applied this workflow to optimise the detection of proteasome substrates by proximity-dependent labelling.
DOI: 10.5517/ccdc.csd.cc2h0sgs
title: CCDC 2294665: Experimental Crystal Structure Determination

description: Related Article: Priya Takkar, Bholey Singh, Balaram Pani, Rakesh Kumar|2023|RSC Advances|13|34239|doi:10.1039/D3RA06387A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h16b3
title: CCDC 2295064: Experimental Crystal Structure Determination

description: Related Article: Mikhail S. Batov, Iker del Rosal, Rosario Scopelliti, Farzaneh Fadaei-Tirani, Ivica Zivkovic, Laurent Maron, Marinella Mazzanti|2023|J.Am.Chem.Soc.|145|26435|doi:10.1021/jacs.3c10617
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h16c4
title: CCDC 2295065: Experimental Crystal Structure Determination

description: Related Article: Mikhail S. Batov, Iker del Rosal, Rosario Scopelliti, Farzaneh Fadaei-Tirani, Ivica Zivkovic, Laurent Maron, Marinella Mazzanti|2023|J.Am.Chem.Soc.|145|26435|doi:10.1021/jacs.3c10617
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h16d5
title: CCDC 2295066: Experimental Crystal Structure Determination

description: Related Article: Mikhail S. Batov, Iker del Rosal, Rosario Scopelliti, Farzaneh Fadaei-Tirani, Ivica Zivkovic, Laurent Maron, Marinella Mazzanti|2023|J.Am.Chem.Soc.|145|26435|doi:10.1021/jacs.3c10617
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2h16f6
title: CCDC 2295067: Experimental Crystal Structure Determination

description: Related Article: Mikhail S. Batov, Iker del Rosal, Rosario Scopelliti, Farzaneh Fadaei-Tirani, Ivica Zivkovic, Laurent Maron, Marinella Mazzanti|2023|J.Am.Chem.Soc.|145|26435|doi:10.1021/jacs.3c10617
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7183104
title: Blind Date: The use and misuse of GHB/GBL.
DOI: 10.6073/pasta/9fe600916cb0a880d8674043c9de2295
title: Lake Sediment Pollen from Rogers Lake in Old Lyme CT from 13933 BP to Present

description: Aim
 We analyzed a dataset composed of multiple palaeoclimate and lake-sediment pollen records from New England to explore how postglacial changes in the composition and spatial patterns of vegetation were controlled by regional-scale climate change, a subregional environmental gradient, and landscape-scale variations in soil characteristics.
 
 
 Location
 The 120,000-km2 study area includes parts of Vermont and New Hampshire in the north, where sites are 150-200 km from the Atlantic Ocean, and spans the coastline from southeastern New York to Cape Cod and the adjacent islands, including Block Island, the Elizabeth Islands, Nantucket, and Martha’s Vineyard.
 
 
 Results
 Boreal forest featuring Picea and Pinus banksiana was present across the region when conditions were cool and dry 14,000-12,000 calibrated 14C yrs before present (ybp). Pinus strobus became regionally dominant as temperatures increased between 12,000 and 10,000 ybp. The composition of forests in inland and coastal areas diverged in response to further warming after 10,000 ybp, when Quercus and Pinus rigida expanded across southern New England, while conditions remained cool enough in inland areas to maintain Pinus strobus. Increasing precipitation allowed Tsuga canadensis, Fagus grandifolia, and Betula to replace Pinus strobus in inland areas during 9000-8000 ybp, and also led to the expansion of Carya across the coastal part of the region beginning at 7000-6000 ybp. Abrupt cooling at 5500-5000 ybp caused sharp declines in Tsuga in inland areas and Quercus at some coastal sites, and the populations of those taxa remained low until they recovered around 3000 ybp in response to rising precipitation. Throughout most of the Holocene, sites underlain by sandy glacial deposits were occupied by Pinus rigida and Quercus.
 
 
 Main conclusions
 Postglacial changes in the composition and spatial pattern of New England forests were controlled by long-term trends and abrupt shifts in temperature and precipitation, as well as by the environmental gradient between coastal and inland parts of the region. Substrate and soil moisture shaped landscape-scale variations in forest composition.
DOI: 10.6073/pasta/1b3918d2560e07a6c1141c0e743eb84b
title: Lake Sediment Pollen and Charcoal from Sears Pond on Long Island NY from 10690 BP to Present

description: Aim
 We analyzed a dataset composed of multiple palaeoclimate and lake-sediment pollen and charcoal records from New England to explore how postglacial changes in forest composition and spatial patterns of vegetation and fire were controlled by regional-scale climate change, a subregional environmental gradient, and landscape-scale variations in soil characteristics.
 
 
 Location
 The 120,000-km2 study area includes parts of Vermont and New Hampshire in the north, where sites are 150-200 km from the Atlantic Ocean, and spans the coastline from southeastern New York to Cape Cod and the adjacent islands, including Block Island, the Elizabeth Islands, Nantucket, and Martha’s Vineyard.
 
 
 Results
 Boreal forest featuring Picea and Pinus banksiana was present across the region when conditions were cool and dry 14,000-12,000 calibrated 14C yrs before present (ybp). Pinus strobus became regionally dominant as temperatures increased between 12,000 and 10,000 ybp. The composition of forests in inland and coastal areas diverged in response to further warming after 10,000 ybp, when Quercus and Pinus rigida expanded across southern New England, while conditions remained cool enough in inland areas to maintain Pinus strobus. Fire severity was high during 10,000-8000 ybp. Increasing precipitation allowed Tsuga canadensis, Fagus grandifolia, and Betula to replace Pinus strobus in inland areas during 9000-8000 ybp, and also led to the expansion of Carya across the coastal part of the region beginning at 7000-6000 ybp. Abrupt cooling at 5500-5000 ybp caused sharp declines in Tsuga in inland areas and Quercus at some coastal sites, and the populations of those taxa remained low until they recovered around 3000 ybp in response to rising precipitation. Throughout most of the Holocene, sites underlain by sandy glacial deposits were occupied by Pinus rigida and Quercus.
 
 
 Main conclusions
 Postglacial changes in the composition and spatial pattern of New England forests were controlled by long-term trends and abrupt shifts in temperature and precipitation, as well as by the environmental gradient between coastal and inland parts of the region. Substrate and soil moisture shaped landscape-scale variations in forest composition. Climate and fuels largely controlled fire severity in New England during the postglacial interval.
DOI: 10.25925/20231201
title: Multi-laboratory compilation of atmospheric carbon dioxide data for the period 1957-2022; obspack_co2_1_GLOBALVIEWplus_v9.1_2023-12-08

description: This product is constructed using the Observation Package (ObsPack) framework [Masarie et al., 2014; www.earth-syst-sci-data.net/6/375/2014/]. The framework is designed to bring together atmospheric greenhouse gas (GHG) observations from a variety of sampling platforms, prepare them with specific applications in mind, and package and distribute them in a self-consistent and well-documented product. ObsPack products are intended to support GHG budget studies and represent a new generation of cooperative value-added GHG data products. This product includes 617 atmospheric carbon dioxide datasets derived from observations made by 77 laboratories from 28 countries. Data for the period 1957-2022 (where available) are included.
DOI: 10.5066/p9n1cdfw
title: Data from Cretaceous formations of the Babouri-Figuil Sedimentary Basin, northern Cameroon

description: This study contains TOC and programmed pyrolysis data, as well as vitrinite reflectance collected from 12 samples taken from the Babouri-Figuil Sedimentary basin in northern Cameroon.
DOI: 10.6084/m9.figshare.24717990
title: Data sets used in the manuscript "Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade"

description: 18S rRNA datasetsingle-gene datasets for phylogenomicsdetected contaminant sequences and paralogsconcatenated phylogenomic matricestranscriptome assemblies of newly sequenced taxa (cleaned by WinstonCleaner)datasets used for analysis of stop codon identity in APM ciliatesdatasets of identified 3´UTRs and mapped CDS onto respective transcriptomic contigsoutput file of codetta
DOI: 10.6084/m9.figshare.24717990.v1
title: Data sets used in the manuscript "Single cell transcriptomics reveals UAR codon reassignment in Palmarella salina (Metopida, Armophorea) and confirms Armophorida belongs to APM clade"

description: 18S rRNA datasetsingle-gene datasets for phylogenomicsdetected contaminant sequences and paralogsconcatenated phylogenomic matricestranscriptome assemblies of newly sequenced taxa (cleaned by WinstonCleaner)datasets used for analysis of stop codon identity in APM ciliatesdatasets of identified 3´UTRs and mapped CDS onto respective transcriptomic contigsoutput file of codetta
DOI: 10.6073/pasta/46adad775bcdcbc94a8132649593d72e
title: Lake Sediment Pollen from Spruce Pond in Harriman State Park NY from 13778 BP to Present

description: Aim
 We analyzed a dataset composed of multiple palaeoclimate and lake-sediment pollen records from New England to explore how postglacial changes in the composition and spatial patterns of vegetation were controlled by regional-scale climate change, a subregional environmental gradient, and landscape-scale variations in soil characteristics.
 
 
 Location
 The 120,000-km2 study area includes parts of Vermont and New Hampshire in the north, where sites are 150-200 km from the Atlantic Ocean, and spans the coastline from southeastern New York to Cape Cod and the adjacent islands, including Block Island, the Elizabeth Islands, Nantucket, and Martha’s Vineyard.
 
 
 Results
 Boreal forest featuring Picea and Pinus banksiana was present across the region when conditions were cool and dry 14,000-12,000 calibrated 14C yrs before present (ybp). Pinus strobus became regionally dominant as temperatures increased between 12,000 and 10,000 ybp. The composition of forests in inland and coastal areas diverged in response to further warming after 10,000 ybp, when Quercus and Pinus rigida expanded across southern New England, while conditions remained cool enough in inland areas to maintain Pinus strobus. Increasing precipitation allowed Tsuga canadensis, Fagus grandifolia, and Betula to replace Pinus strobus in inland areas during 9000-8000 ybp, and also led to the expansion of Carya across the coastal part of the region beginning at 7000-6000 ybp. Abrupt cooling at 5500-5000 ybp caused sharp declines in Tsuga in inland areas and Quercus at some coastal sites, and the populations of those taxa remained low until they recovered around 3000 ybp in response to rising precipitation. Throughout most of the Holocene, sites underlain by sandy glacial deposits were occupied by Pinus rigida and Quercus.
 
 
 Main conclusions
 Postglacial changes in the composition and spatial pattern of New England forests were controlled by long-term trends and abrupt shifts in temperature and precipitation, as well as by the environmental gradient between coastal and inland parts of the region. Substrate and soil moisture shaped landscape-scale variations in forest composition.
DOI: 10.5281/zenodo.10359686
title: Dataset for honey bee audio detection

description: The database contains recordings of bees and drones in wav format, without compression. The sampling frequency is 44.1kHz.
The database contains 10000 one-second recordings of bees and 1700 one-second recordings of drones.
DOI: 10.5281/zenodo.10362251
title: A joint embedding of protein sequence and structure enables robust variant effect predictions
DOI: 10.6073/pasta/eefa05030178171558f18a25b61b0fff
title: Lake Sediment Pollen from Sutherland Pond in Black Rock Forest NY from 13899 BP to Present

description: Aim
 We analyzed a dataset composed of multiple palaeoclimate and lake-sediment pollen records from New England to explore how postglacial changes in the composition and spatial patterns of vegetation were controlled by regional-scale climate change, a subregional environmental gradient, and landscape-scale variations in soil characteristics.
 
 
 Location
 The 120,000-km2 study area includes parts of Vermont and New Hampshire in the north, where sites are 150-200 km from the Atlantic Ocean, and spans the coastline from southeastern New York to Cape Cod and the adjacent islands, including Block Island, the Elizabeth Islands, Nantucket, and Martha’s Vineyard.
 
 
 Results
 Boreal forest featuring Picea and Pinus banksiana was present across the region when conditions were cool and dry 14,000-12,000 calibrated 14C yrs before present (ybp). Pinus strobus became regionally dominant as temperatures increased between 12,000 and 10,000 ybp. The composition of forests in inland and coastal areas diverged in response to further warming after 10,000 ybp, when Quercus and Pinus rigida expanded across southern New England, while conditions remained cool enough in inland areas to maintain Pinus strobus. Increasing precipitation allowed Tsuga canadensis, Fagus grandifolia, and Betula to replace Pinus strobus in inland areas during 9000-8000 ybp, and also led to the expansion of Carya across the coastal part of the region beginning at 7000-6000 ybp. Abrupt cooling at 5500-5000 ybp caused sharp declines in Tsuga in inland areas and Quercus at some coastal sites, and the populations of those taxa remained low until they recovered around 3000 ybp in response to rising precipitation. Throughout most of the Holocene, sites underlain by sandy glacial deposits were occupied by Pinus rigida and Quercus.
 
 
 Main conclusions
 Postglacial changes in the composition and spatial pattern of New England forests were controlled by long-term trends and abrupt shifts in temperature and precipitation, as well as by the environmental gradient between coastal and inland parts of the region. Substrate and soil moisture shaped landscape-scale variations in forest composition.
DOI: 10.5281/zenodo.10361533
title: CEGAR-based approach for solving combinatorial optimization modulo quantified linear arithmetics problems -- Code and Appendix

description: Technical appendix, and code and data used for generating the benchmarks of the paper published at AAAI 2024.
 
 
description: Instructions for running the benchmarks are provided in the `code_and_data.zip` file. Alternatively, the Docker image "image.tar.gz" with all dependencies pre-installed can be used as follows:

gunzip -c image.tar.gz | docker import - merrinasp
The image merrinasp can be used to run the instances, as explained in the data/README.md file. For instance, with the data folder:

docker run --rm -v $PWD:/w -it merrinasp make  runs/merrin/covert_2001/n100/0_0/optA/opt-auto/run1/out-times.csv
DOI: 10.5281/zenodo.10361532
title: CEGAR-based approach for solving combinatorial optimization modulo quantified linear arithmetics problems -- Code and Appendix

description: Technical appendix, and code and data used for generating the benchmarks of the paper published at AAAI 2024.
 
 
description: Instructions for running the benchmarks are provided in the `code_and_data.zip` file. Alternatively, the Docker image "image.tar.gz" with all dependencies pre-installed can be used as follows:

gunzip -c image.tar.gz | docker import - merrinasp
The image merrinasp can be used to run the instances, as explained in the data/README.md file. For instance, with the data folder:

docker run --rm -v $PWD:/w -it merrinasp make  runs/merrin/covert_2001/n100/0_0/optA/opt-auto/run1/out-times.csv
DOI: 10.57745/jrqgqi
title: valBeads.tab

description: Data relative to process parameters for each bead
DOI: 10.57745/vyxr60
title: Bead_5_3D.zip

description: Dataset relative to bead number 5
DOI: 10.57745/o6addl
title: Bead_2_3D.zip

description: Dataset relative to bead number 2
DOI: 10.57745/3rfpjy
title: Bead_1_3D.zip

description: Dataset relative to bead number 1
DOI: 10.57745/pxke4l
title: ReadMe.txt

description: To read first
DOI: 10.57745/stfbwz
title: Bead_3_3D.zip

description: Dataset relative to bead number 3
DOI: 10.57745/cr3pwt
title: Bead_6_3D.zip

description: Dataset relative to bead number 6
DOI: 10.57745/bvlxes
title: Bead_4_3D.zip

description: Dataset relative to bead number 4
DOI: 10.34943/e4124c37-9ce9-49fb-82e4-f2e6e56522ea
title: Endeavour North Acoustic Doppler Current Profiler 75 kHz Deployed 2012-06-19

description: The RDI Workhorse Long Ranger ADCP 75 kHz (16511) was deployed on 2012-06-19 at Endeavour North. This north section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Acoustic Doppler Current Profiler 75 kHz. Acoustic Doppler Current Profilers (ADCP) are hydroacoustic instruments, similar to sonars. ADCPs measure current speed and direction at multiple predetermined depths simultaneously. ADCPs use the Doppler effect of sound waves that are scattered by particles in seawater over a depth range. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 2.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/27690610-1ab2-46dd-b8ae-032cec58b00a
title: Endeavour North Acoustic Doppler Current Profiler 75 kHz Deployed 2012-06-19

description: The RDI Workhorse Long Ranger ADCP 75 kHz (16511) was deployed on 2012-06-19 at Endeavour North. This north section of the Endeavour Hydrothermal Vents includes two moorings to monitor the regional circulation. This device is a Acoustic Doppler Current Profiler 75 kHz. Acoustic Doppler Current Profilers (ADCP) are hydroacoustic instruments, similar to sonars. ADCPs measure current speed and direction at multiple predetermined depths simultaneously. ADCPs use the Doppler effect of sound waves that are scattered by particles in seawater over a depth range. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.