cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28396702.v1
title: Additional file 4 of Metabolomics- and proteomics-based multi-omics integration reveals early metabolite alterations in sepsis-associated acute kidney injury

description: Additional file 4. The expression of five core metabolites in serum metabolomics. Table S1. Serum metabolomics in SA-AKI mice. Table S2. Quantitative serum metabolomics in patients with SA-AKI or sepsis. Figure S1. Distribution of 3-Hydroxybutyric acid, inosine and creatine in male and female patients. a-b) Scatter plots illustrating the correlation between inosine, myristic acid and BUN. c) Heatmap of 3-hydroxybutyric acid, creatine, and inosine between sepsis and SA-AKI after grouping by sex. d-f) Box plot of 3-hydroxybutyric acid, inosine and creatine between sepsis and SA-AKI in male group. g-i) Box plot of 3-hydroxybutyric acid, inosine and creatine between sepsis and SA-AKI in female group. Green represents sepsis and purple represents SA-AKI. *, ** and *** indicate p &lt; 0.05, p &lt; 0.01, and p &lt; 0.001, respectively. Renal proteomics data has been deposited in the ProteomeXchange Consortium via the PRIDE (Proteomics Identifications) partner repository with the dataset identifier PXD057050.
DOI: 10.6084/m9.figshare.28396723
title: Additional file 5 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 5: Table S1. RNA-Seq statistics.
DOI: 10.6084/m9.figshare.28396723.v1
title: Additional file 5 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 5: Table S1. RNA-Seq statistics.
DOI: 10.6084/m9.figshare.28396726.v1
title: Additional file 6 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 6: Table S2. Results of the de novo transcriptome assembly performed with Trinity.
DOI: 10.6084/m9.figshare.28396726
title: Additional file 6 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 6: Table S2. Results of the de novo transcriptome assembly performed with Trinity.
DOI: 10.6084/m9.figshare.28396729
title: Additional file 7 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 7: Table S3. GO significant enrichment data and KEGG significant enrichment data. (Sheet 1) GO enrichment analysis of genes significantly up-regulated between infected and healthy P. koraiensis. (Sheet 2) GO enrichment analysis of genes significantly down-regulated between infected and healthy P. koraiensis. (Sheet 3) KEGG enrichment analysis of genes significantly up-regulated between infected and healthy P. koraiensis. (Sheet 4) KEGG enrichment analysis of genes significantly down-regulated between infected and healthy P. koraiensis.
DOI: 10.6084/m9.figshare.28396729.v1
title: Additional file 7 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 7: Table S3. GO significant enrichment data and KEGG significant enrichment data. (Sheet 1) GO enrichment analysis of genes significantly up-regulated between infected and healthy P. koraiensis. (Sheet 2) GO enrichment analysis of genes significantly down-regulated between infected and healthy P. koraiensis. (Sheet 3) KEGG enrichment analysis of genes significantly up-regulated between infected and healthy P. koraiensis. (Sheet 4) KEGG enrichment analysis of genes significantly down-regulated between infected and healthy P. koraiensis.
DOI: 10.6084/m9.figshare.28396732
title: Additional file 8 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 8: Table S4. Genes related to terpenoids significantly up-regulated in infected P. koraiensis relative to healthy plants.
DOI: 10.6084/m9.figshare.28396732.v1
title: Additional file 8 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 8: Table S4. Genes related to terpenoids significantly up-regulated in infected P. koraiensis relative to healthy plants.
DOI: 10.6084/m9.figshare.28396735
title: Additional file 9 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 9: Table S5. Genes related to phenylpropanoids significantly up-regulated in infected P. koraiensis relative to healthy plants.
DOI: 10.6084/m9.figshare.28396735.v1
title: Additional file 9 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 9: Table S5. Genes related to phenylpropanoids significantly up-regulated in infected P. koraiensis relative to healthy plants.
DOI: 10.6084/m9.figshare.28396738
title: Additional file 10 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 10: Table S6. Genes related to flavonoids significantly up-regulated in infected P. koraiensis relative to healthy plants.
DOI: 10.6084/m9.figshare.28396738.v1
title: Additional file 10 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 10: Table S6. Genes related to flavonoids significantly up-regulated in infected P. koraiensis relative to healthy plants.
DOI: 10.6084/m9.figshare.28396741
title: Additional file 11 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 11: Table S7. Primers used in this study.
DOI: 10.6084/m9.figshare.28396741.v1
title: Additional file 11 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 11: Table S7. Primers used in this study.
DOI: 10.6084/m9.figshare.28396744
title: Additional file 12 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 12: Table S8. KEGG pathway enrichment between infected and healthy P. koraiensis according to the metabolomic data. (Sheet 1) KEGG enrichment data of significantly up-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in positive polarity mode. (Sheet 2) KEGG enrichment data of significantly down-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in positive polarity mode. (Sheet 3) KEGG enrichment data of significantly up-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in negative polarity mode. (Sheet 4) KEGG enrichment data of significantly down-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in negative polarity mode.
DOI: 10.6084/m9.figshare.28396744.v1
title: Additional file 12 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 12: Table S8. KEGG pathway enrichment between infected and healthy P. koraiensis according to the metabolomic data. (Sheet 1) KEGG enrichment data of significantly up-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in positive polarity mode. (Sheet 2) KEGG enrichment data of significantly down-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in positive polarity mode. (Sheet 3) KEGG enrichment data of significantly up-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in negative polarity mode. (Sheet 4) KEGG enrichment data of significantly down-regulated metabolites in infected P. koraiensis compared with healthy P. koraiensis in negative polarity mode.
DOI: 10.6084/m9.figshare.28396747
title: Additional file 13 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 13: Table S9. Key metabolite data for P. koraiensis responses to B. xylophilus infection.
DOI: 10.6084/m9.figshare.28396747.v1
title: Additional file 13 of Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection

description: Supplementary Material 13: Table S9. Key metabolite data for P. koraiensis responses to B. xylophilus infection.
DOI: 10.6084/m9.figshare.26583051.v2
title: Additional file 2 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 2. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set.
DOI: 10.6084/m9.figshare.26583054.v2
title: Additional file 3 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 3. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set after the test set signal has been quantile normalized.
DOI: 10.6084/m9.figshare.26583051
title: Additional file 2 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 2. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set.
DOI: 10.6084/m9.figshare.26583054
title: Additional file 3 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 3. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set after the test set signal has been quantile normalized.
DOI: 10.6084/m9.figshare.26583057
title: Additional file 4 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 4. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set after the test set signal has been reprocessed to use single-end settings and the signal is subsequently quantile normalized.
DOI: 10.6084/m9.figshare.26583057.v2
title: Additional file 4 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 4. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set after the test set signal has been reprocessed to use single-end settings and the signal is subsequently quantile normalized.
DOI: 10.6084/m9.figshare.26583060
title: Additional file 5 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 5. All experiments used in the training, validation, and blind test sets for the challenge along with ENCODE accessions.
DOI: 10.6084/m9.figshare.26583060.v2
title: Additional file 5 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 5. All experiments used in the training, validation, and blind test sets for the challenge along with ENCODE accessions.
DOI: 10.6084/m9.figshare.26583063
title: Additional file 6 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 6. Performance measures across all ten bootstraps for each of the submitted methods on the challenge round 1 validation set.
DOI: 10.6084/m9.figshare.26583063.v2
title: Additional file 6 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 6. Performance measures across all ten bootstraps for each of the submitted methods on the challenge round 1 validation set.
DOI: 10.6084/m9.figshare.26583051.v1
title: Additional file 2 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 2. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set.
DOI: 10.6084/m9.figshare.26583054.v1
title: Additional file 3 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 3. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set after the test set signal has been quantile normalized.
DOI: 10.6084/m9.figshare.26583057.v1
title: Additional file 4 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 4. Performance measures across all ten bootstraps for each of the submitted methods on the challenge test set after the test set signal has been reprocessed to use single-end settings and the signal is subsequently quantile normalized.
DOI: 10.6084/m9.figshare.26583060.v1
title: Additional file 5 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 5. All experiments used in the training, validation, and blind test sets for the challenge along with ENCODE accessions.
DOI: 10.6084/m9.figshare.26583063.v1
title: Additional file 6 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

description: Additional file 6. Performance measures across all ten bootstraps for each of the submitted methods on the challenge round 1 validation set.
DOI: 10.15468/dl.svuk5z
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Niphon spinosus Cuvier, 1828",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 187 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024585-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jwez9p
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophiomus setigerus (Vahl, 1797)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 403 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024587-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfnsp3
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gorilla beringei graueri Matschie, 1914"
 ]
}

 The dataset includes 73 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024589-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xzj4r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophiomus laticeps (Ogilby, 1910)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024590-250127130748423/datasets/export for details.
DOI: 10.15468/dl.whxmmk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophius setigerus Vahl, 1797",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024593-250127130748423/datasets/export for details.
DOI: 10.15468/dl.56u9fb
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.2.108_2",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Nymphalidae, Hesperiidae, Pieridae, Papilionidae, Hedylidae, Lycaenidae, Riodinidae)"
 ]
}

 The dataset includes 47 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024592-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3h2ks
title: Occurrence Download

description: A dataset containing 1823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((45.84976 14.77617,187.15024 14.77617,187.15024 71.22383,45.84976 71.22383,45.84976 14.77617))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bupleurum scorzonerifolium Willd."
 ]
}

 The dataset includes 1823 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024591-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.3677jtft
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11454 records)
DOI: 10.15468/dl.825sha
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphioctopus fangsiao (d'Orbigny, 1839)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 260 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024594-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsj32m
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Octopus fangsiao d'Orbigny",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024595-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14854404
title: Dataset for 'Reconfigurable Liquid Crystal-Based Physical Unclonable Function: A Multidimensional Approach to Secure and Adaptive Authentication'

description: Dataset for 'Reconfigurable Liquid Crystal-Based Physical Unclonable Function: A Multidimensional Approach to Secure and Adaptive Authentication'
DOI: 10.5281/zenodo.14854405
title: Dataset for 'Reconfigurable Liquid Crystal-Based Physical Unclonable Function: A Multidimensional Approach to Secure and Adaptive Authentication'

description: Dataset for 'Reconfigurable Liquid Crystal-Based Physical Unclonable Function: A Multidimensional Approach to Secure and Adaptive Authentication'
DOI: 10.15468/dl.pajm8m
title: Occurrence Download

description: A dataset containing 17760 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium tricornutum Dandy"
 ]
}

 The dataset includes 17760 records from 424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024596-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/hqmta7
title: A systematic literature review of illicit financial flows and money laundering. Current state of research and estimation methods

description: This dataset constitutes Appendix 1 to the article submitted to the Journal of Economics and Management. It contains a list of 1,135 academic articles included in the thematic synthesis analysis. This appendix provides transparency into the literature classification process and supports the reproducibility of the review.The aim of the paper is to examine the current state of research on illicit financial flows (IFF) and money laundering (ML), with a particular focus on the detection and estimation methods. This review includes a screening analysis of 1,249 articles from two major databases - Scopus and Web of Science - providing a comprehensive view of the existing literature. Thematic synthesis of 1,135 articles, following the approach of Tiwari, Gepp and Kumar (2020), enabled the classification of the selected studies into relevant subject areas. As a result of thematic synthesis, the literature was divided into six dimensions: AML framework, regulations and their effectiveness, new ML opportunities, the role of actors and their relative importance, the impact of ML on the economy, IFF and ML detection and the scale of IFF and ML. Based on this analysis, two dimensions - IFF and ML detection, and the scale of IFF and ML - were selected for further exploration through textual narrative synthesis (TNS). This final synthesis of 234 papers, identifies the existing methods as well as the variables and proxies used in the literature to detect and estimate IFF and ML.
DOI: 10.5517/ccdc.csd.cc2k41nf
title: CCDC 2357384: Experimental Crystal Structure Determination

description: Related Article: Piyush Singh, Himan Dev Singh, Pragalbh Shekhar, Praveen Nasa, Deepak Rase, Chitvan Jain, Yashraj Kumar Singh, Ramanathan Vaidhyanathan|2024|Cryst.Growth Des.|24|8838|doi:10.1021/acs.cgd.4c00825
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.