cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3796009_d2
title: Additional file 2: of Identification of conserved genes triggering puberty in European sea bass males (Dicentrarchus labrax) by microarray expression profiling

description: A table containing all the DEGs found in the microarray during the onset of European sea bass puberty. The searchable excel file contains the probe ID and primary accession numbers assigned in the custom European sea bass microarray to all differentially expressed genes. The p-value and adjusted p-value are also included, as well as the fold change and the regulation (stage I versus stage II) obtained after comparison of sea bass testes during the onset of puberty. The annotation information is given in the gene description column that reported the presence of 153 non-annotated sequences from a total of 315 differentially expressed genes, and in the gene description column containing a brief explanation of each gene function. Finally, a column with the assigned GO-terms is also included (excel format, .xls). (XLS 144ย�kb)
DOI: 10.6084/m9.figshare.c.3796012_d2
title: Additional file 1: SD1. of Intricacies in arrangement of SNP haplotypes suggest â  Great Admixtureâ   that created modern humans

description: Complete set of our pipeline of Perl programs to characterize human haplotypes and Denisovan diplotypes is presented in this file. All the output files which contain information about every GV with MAF &gt;0.25 (identifier, location, alleles) and every haplotype in the human genome and every diplotype in the Denisovan genome are also available in this file. The file is archived and compressed using UNIX gzip and tar commands. The size of this file is 2.8Â GB and it is available from our web-page: ( http://bpg.utoledo.edu/~afedorov/lab/YinYang.html ). (GZ 2.63 gb)
DOI: 10.6084/m9.figshare.c.3796810_d2
title: Additional file 2: Figure S1. of Proteomic analysis by iTRAQ-MRM of soybean resistance to Lamprosema Indicate

description: Correlation between predicted retention time and observed retention time. Figure S2.-A MS/MS spectrum of a given peptide of gi351723671refNP-001237543-1_WVAFVDNEIQK_MS2. Figure S2.-B Dot-product of a given peptide of gi351723671refNP-001237543-1_WVAFVDNEIQK_MS2. Figure S2.-C MRM chromatogram of a given peptide of gi351723671refNP-001237543-1_WVAFVDNEIQK_MS2. Figure S3-A MS/MS spectrum of a given peptide of gi351724717refNP-001237323-1_GLFEGGIHLPTDALSK_MS2. Figure S3.-B Dot-product of a given peptide of gi351724717refNP-001237323-1_GLFEGGIHLPTDALSK_MS2. Figure S3.-C MRM chromatogram of a given peptide of gi351724717refNP-001237323-1_ GLFEGGIHLPTDALSK_MS2. (ZIP 197Â kb)
DOI: 10.6084/m9.figshare.c.3796870_d1.v1
title: Additional file 1: Figure S1. of Sinapic acid or its derivatives interfere with abscisic acid homeostasis during Arabidopsis thaliana seed germination

description: Sinapic acid promotes seed germination and early seedling growth in Arabidopsis. a Comparison of germination rates of Arabidopsis after exposure to different concentrations of sinapic acid for 2 d. Fresh seeds were germinated and grown on wet filter paper with 0.5 mM sinapic acid or water alone as a control. Values are means ± SD of three independent experiments. Asterisks indicate significant changes compared with the mock (P
DOI: 10.6084/m9.figshare.c.3796870_d1
title: Additional file 1: Figure S1. of Sinapic acid or its derivatives interfere with abscisic acid homeostasis during Arabidopsis thaliana seed germination

description: Sinapic acid promotes seed germination and early seedling growth in Arabidopsis. a Comparison of germination rates of Arabidopsis after exposure to different concentrations of sinapic acid for 2 d. Fresh seeds were germinated and grown on wet filter paper with 0.5 mM sinapic acid or water alone as a control. Values are means ± SD of three independent experiments. Asterisks indicate significant changes compared with the mock (P
DOI: 10.6084/m9.figshare.c.3796864_d2.v1
title: Additional file 2: of Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development

description: In-depth overview of the features of the selected pharmacogenomic CDSS. Microsoft Excel spreadsheet format (.xls); providing an overview of the features of the 20 selected pharmacogenomic CDSS. (XLS 60Â kb)
DOI: 10.6084/m9.figshare.c.3796864_d2
title: Additional file 2: of Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development

description: In-depth overview of the features of the selected pharmacogenomic CDSS. Microsoft Excel spreadsheet format (.xls); providing an overview of the features of the 20 selected pharmacogenomic CDSS. (XLS 60Â kb)
DOI: 10.60656/858435b142f14d3e
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 20 Jan 2023
DOI: 10.6084/m9.figshare.c.3796870_d2.v1
title: Additional file 2: Figure S2. of Sinapic acid or its derivatives interfere with abscisic acid homeostasis during Arabidopsis thaliana seed germination

description: Expression of ABA metabolism genes in response to sinapic acid. a Quantitative real-time RT-PCR (qRT-PCR) to examine the expression of ABA catabolism genes (CYP707A1, CYP707A2, CYP707A3, and CYP707A4) with sinapic acid. b qRT-PCR to examine the expression of de novo ABA biosynthesis genes (BG1 and BG2) with sinapic acid. The seeds were incubated with 0.5 mM sinapic acid or dimethyl sulfoxide (DMSO) for 36 h at 4 °C in the dark and then germinated on MS agar medium for 1 d. Total RNA was isolated from the treated and mock-treated seeds; Actin2 primers were used as an internal control. (PPTM 107 kb)
DOI: 10.15468/dl.43u6n8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathophilus flemingi Aron & McCrery, 1958",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038945-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3796936_d3.v1
title: Additional file 2: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: Primer sequences and PCR conditions (XLSX 11 kb).
DOI: 10.6084/m9.figshare.c.3796936_d3
title: Additional file 2: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: Primer sequences and PCR conditions (XLSX 11 kb).
DOI: 10.6084/m9.figshare.c.3796936_d4.v1
title: Additional file 3: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: List of the nymphs collected for this study. Each nymph sample was subjected to COI amplification and sequencing. Samples with parasitoid DNA present were discarded. The list includes the number of nymphs from each species and site that were subject to DNA extraction, the number of those DNA extractions that were determined to be parasitised and the number of psyllid nymphs remaining that were included in the final 16S rRNA gene amplicon dataset (XLSX 12 kb).
DOI: 10.6084/m9.figshare.c.3796915_d8.v1
title: Additional file 2: Table S1. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Summary statistics of CMM taxa and alpha diversity indices as profiled based on DNA. Means, standard deviations (STD), minimum (Min), maximum (Max), and coefficient of variation (CV) values of relative abundances in population G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3796915_d8
title: Additional file 2: Table S1. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Summary statistics of CMM taxa and alpha diversity indices as profiled based on DNA. Means, standard deviations (STD), minimum (Min), maximum (Max), and coefficient of variation (CV) values of relative abundances in population G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3796936_d4
title: Additional file 3: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: List of the nymphs collected for this study. Each nymph sample was subjected to COI amplification and sequencing. Samples with parasitoid DNA present were discarded. The list includes the number of nymphs from each species and site that were subject to DNA extraction, the number of those DNA extractions that were determined to be parasitised and the number of psyllid nymphs remaining that were included in the final 16S rRNA gene amplicon dataset (XLSX 12 kb).
DOI: 10.6084/m9.figshare.c.3796915_d9.v1
title: Additional file 3: Table S2. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Summary statistics of CMM taxa and alpha diversity indices as profiled based on RNA. Means, standard deviations (STD), minimum (Min), maximum (Max), and coefficient of variation (CV) values relative abundances in population G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3796954_d1
title: Additional file 1: of Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa

description: LC-MS/MS dataset used for LBP identification. Specifications of LC-MS/MS measurements and data analysis are given and the data obtained are presented along with each filtering step in the identification of LBP candidates. (XLSX 7844Â kb)
DOI: 10.6084/m9.figshare.c.3796915_d9
title: Additional file 3: Table S2. of Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts

description: Summary statistics of CMM taxa and alpha diversity indices as profiled based on RNA. Means, standard deviations (STD), minimum (Min), maximum (Max), and coefficient of variation (CV) values relative abundances in population G15 (n = 270). When taxa are redundant, only the lowest rank is shown. Un: unclassified. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3796936_d5.v1
title: Additional file 4: of Symbionts in waiting: the dynamics of incipient endosymbiont complementation and replacement in minimal bacterial communities of psyllids

description: qPCR primer efficiency (XLSX 10 kb).
DOI: 10.60656/f15ac1540fe840d2
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Granada, Hyytiälä, and 8 other sites on 21 Jan 2023
DOI: 10.6084/m9.figshare.c.3796990_d2.v1
title: Additional file 2: Table S1. of Genome analysis of the thermoacidophilic archaeon Acidianus copahuensis focusing on the metabolisms associated to biomining activities

description: Complete information on the genes predicted in the Acidianus copahuensis genome based on RAST server processing results. The table contains all genomic positions from all predicted genes, with their corresponding sequences and annotations, the Sulfolobales species where they were also found, and the color references used in Fig. 1b. (XLSX 1646 kb)
DOI: 10.6084/m9.figshare.c.3796990_d2
title: Additional file 2: Table S1. of Genome analysis of the thermoacidophilic archaeon Acidianus copahuensis focusing on the metabolisms associated to biomining activities

description: Complete information on the genes predicted in the Acidianus copahuensis genome based on RAST server processing results. The table contains all genomic positions from all predicted genes, with their corresponding sequences and annotations, the Sulfolobales species where they were also found, and the color references used in Fig. 1b. (XLSX 1646 kb)
DOI: 10.6084/m9.figshare.c.3797005_d1.v1
title: Additional file 1 of Can FOSS projects benefit from integrating Kanban: a case study

description: Supplementary material. (ZIP 674 kb)
DOI: 10.6084/m9.figshare.c.3797005_d1
title: Additional file 1 of Can FOSS projects benefit from integrating Kanban: a case study

description: Supplementary material. (ZIP 674 kb)
DOI: 10.6084/m9.figshare.c.3796990_d3
title: Additional file 3: Table S2. of Genome analysis of the thermoacidophilic archaeon Acidianus copahuensis focusing on the metabolisms associated to biomining activities

description: List of proteins found in A. copahuensis corresponding to relevant metabolisms for biomining activities that are mentioned throughout this work. (XLSX 12 kb)
DOI: 10.15468/dl.qbjqts
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyagonus alascanus (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038946-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3797008_d9
title: Additional file 4: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-positive Staphylococci in 3rd or 4th lactations (CoPS-3/4). (XLS 107Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d10.v1
title: Additional file 5: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-positive Staphylococci in 3rd or 4th lactations (CoPS-3/4). (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d10
title: Additional file 5: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-positive Staphylococci in 3rd or 4th lactations (CoPS-3/4). (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d11.v1
title: Additional file 6: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-negative Staphylococci in 1st or 2nd lactations (CoNS-1/2). (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d11
title: Additional file 6: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-negative Staphylococci in 1st or 2nd lactations (CoNS-1/2). (XLS 21Â kb)
DOI: 10.60656/e5fec8e670aa41d4
title: Custom collection of ice water content data from Bucharest, Chilbolton, Galați, Hyytiälä, Jülich, and 7 other sites on 22 Jan 2023
DOI: 10.6084/m9.figshare.c.3797008_d12.v1
title: Additional file 7: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-negative Staphylococci in 1st or 2nd lactations (CoNS-1/2). (XLS 20Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d13.v1
title: Additional file 8: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-negative Staphylococci in 3rd or 4th lactations (CoNS-3/4). (XLS 81Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d12
title: Additional file 7: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with down-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-negative Staphylococci in 1st or 2nd lactations (CoNS-1/2). (XLS 20Â kb)
DOI: 10.6084/m9.figshare.c.3797008_d13
title: Additional file 8: of Transcriptome profiling of Staphylococci-infected cow mammary gland parenchyma

description: Genes with up-regulated expression found in samples derived from cow mammary gland parenchyma infected with coagulase-negative Staphylococci in 3rd or 4th lactations (CoNS-3/4). (XLS 81Â kb)
DOI: 10.6084/m9.figshare.26115160
title: UMOD in AKI and nephron loss

description: Blood and kidney samples were collected 6 h, 24 h, 3 days and 8 weeks after ischemia/reperfusion (I/R) in a rat model. To investigate the impact of nephron number on UMOD levels, sera and tissue from healthy, uninephrectomized (Unx) and 5/6-nephrectomized (Snx) rats were analyzed. Histological changes, kidney function and cell damage were evaluated and serum UMOD, <i>Umod </i>mRNA expression and distribution of UMOD protein in the kidney were examined.
DOI: 10.6084/m9.figshare.c.3798118_d2.v1
title: Additional file 2: of Global gene expression in muscle from fasted/refed trout reveals up-regulation of genes promoting myofibre hypertrophy but not myofibre production

description: Major functional categories of cluster IIa and lists of genes that formed them (XLSX 16 kb)
DOI: 10.6084/m9.figshare.26115160.v2
title: UMOD in AKI and nephron loss

description: Blood and kidney samples were collected 6 h, 24 h, 3 days and 8 weeks after ischemia/reperfusion (I/R) in a rat model. To investigate the impact of nephron number on UMOD levels, sera and tissue from healthy, uninephrectomized (Unx) and 5/6-nephrectomized (Snx) rats were analyzed. Histological changes, kidney function and cell damage were evaluated and serum UMOD, <i>Umod </i>mRNA expression and distribution of UMOD protein in the kidney were examined.
DOI: 10.6084/m9.figshare.26115160.v1
title: UMOD in AKI and nephron loss

description: Blood and kidney samples were collected 6 h, 24 h, 3 days and 8 weeks after ischemia/reperfusion (I/R) in a rat model. To investigate the impact of nephron number on UMOD levels, sera and tissue from healthy, uninephrectomized (Unx) and 5/6-nephrectomized (Snx) rats were analyzed. Histological changes, kidney function and cell damage were evaluated and serum UMOD, <i>Umod </i>mRNA expression and distribution of UMOD protein in the kidney were examined.
DOI: 10.6084/m9.figshare.c.3798103_d3.v1
title: Additional file 3: Table S3. of Gene-centromere mapping in meiotic gynogenetic European seabass

description: All SNP markers used: Marker ID, locations of markers on physical map, genetic map corresponding of LGs, distance (cM) and the percentage of heterozygosity ratio. (CSV 27 kb)
DOI: 10.6084/m9.figshare.c.3798118_d2
title: Additional file 2: of Global gene expression in muscle from fasted/refed trout reveals up-regulation of genes promoting myofibre hypertrophy but not myofibre production

description: Major functional categories of cluster IIa and lists of genes that formed them (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3798103_d3
title: Additional file 3: Table S3. of Gene-centromere mapping in meiotic gynogenetic European seabass

description: All SNP markers used: Marker ID, locations of markers on physical map, genetic map corresponding of LGs, distance (cM) and the percentage of heterozygosity ratio. (CSV 27 kb)
DOI: 10.6084/m9.figshare.c.3798118_d3.v1
title: Additional file 3: of Global gene expression in muscle from fasted/refed trout reveals up-regulation of genes promoting myofibre hypertrophy but not myofibre production

description: Major functional categories of cluster IIb and lists of genes that formed them (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3798103_d4.v1
title: Additional file 4: Table S4. of Gene-centromere mapping in meiotic gynogenetic European seabass

description: Position of microsatellites from previous studies and their informative level. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3798103_d4
title: Additional file 4: Table S4. of Gene-centromere mapping in meiotic gynogenetic European seabass

description: Position of microsatellites from previous studies and their informative level. (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3798133_d1.v1
title: Additional file 1: Table S1. of Prevalence of frailty among community dwelling older adults in receipt of low level home support: a cross-sectional analysis of the North Dublin Cohort

description: Prevalence of frailty categories (condensed) overall and by age categories. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3798145_d9.v1
title: Additional file 9: of DNA methylation-based chromatin compartments and ChIP-seq profiles reveal transcriptional drivers of prostate carcinogenesis

description: Table of geneSetTest p values and adjusted p values for mapped TF targets from each ChIP-seq study, representing systematic over- or underexpression in PRAD tumour samples relative to normal prostate tissue. (TXT 69 kb)
DOI: 10.6084/m9.figshare.c.3798175_d5.v1
title: Additional file 5: Table S2. of Characterization of MED12, HMGA2, and FH alterations reveals molecular variability in uterine smooth muscle tumors

description: MED12 exon 1/2 mutation status and results of HMGA2 and 2SC immunohistochemistry of 65 conventional uterine leiomyomas (XLSX 11 kb).
DOI: 10.6084/m9.figshare.c.3798145_d9
title: Additional file 9: of DNA methylation-based chromatin compartments and ChIP-seq profiles reveal transcriptional drivers of prostate carcinogenesis

description: Table of geneSetTest p values and adjusted p values for mapped TF targets from each ChIP-seq study, representing systematic over- or underexpression in PRAD tumour samples relative to normal prostate tissue. (TXT 69 kb)
DOI: 10.6084/m9.figshare.c.3798175_d5
title: Additional file 5: Table S2. of Characterization of MED12, HMGA2, and FH alterations reveals molecular variability in uterine smooth muscle tumors

description: MED12 exon 1/2 mutation status and results of HMGA2 and 2SC immunohistochemistry of 65 conventional uterine leiomyomas (XLSX 11 kb).
DOI: 10.6084/m9.figshare.c.3798175_d6.v1
title: Additional file 6: Table S3 of Characterization of MED12, HMGA2, and FH alterations reveals molecular variability in uterine smooth muscle tumors

description: MED12 exon 1/2 mutation status and results of HMGA2 and 2SC immunohistochemistry of 94 histopathological uterine leiomyoma variants (XLSX 13 kb).
DOI: 10.6084/m9.figshare.c.3798175_d6
title: Additional file 6: Table S3 of Characterization of MED12, HMGA2, and FH alterations reveals molecular variability in uterine smooth muscle tumors

description: MED12 exon 1/2 mutation status and results of HMGA2 and 2SC immunohistochemistry of 94 histopathological uterine leiomyoma variants (XLSX 13 kb).
DOI: 10.6084/m9.figshare.c.3798175_d7.v1
title: Additional file 7: Table S4. of Characterization of MED12, HMGA2, and FH alterations reveals molecular variability in uterine smooth muscle tumors

description: MED12 exon 1/2 mutation status and results of HMGA2 and 2SC immunohistochemistry of 51 uterine leiomyosarcomas (XLSX 12 kb).
DOI: 10.6084/m9.figshare.28053041
title: SARS-CoV-2 infection on hematologic markers

description: Impact of SARS-CoV-2 infection on hematologic markers, liver and kidney functions in cases with schizophrenia patients