cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5767038.v2
title: Interview - Simon Brown

description: This dataset 'Interview - Simon Brown’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. <br>The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.6084/m9.figshare.5767038.v1
title: Interview - Simon Brown

description: This dataset 'Interview - Simon Brown’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. <br>The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.6084/m9.figshare.12902615.v1
title: R0195_20171003a_videos

description: Rat 0195, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12904538.v1
title: R0193_20170930a_videos

description: Rat 0193, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12906485.v1
title: Data Experiment 1 and 2.xlsx

description: Embodiment and kinaesthesia scores (speed, duration) from two experiments (Giroux et al)
DOI: 10.6084/m9.figshare.4902149
title: FS874 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS874 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.4902155
title: FS881 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS881 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.4902146
title: FS856 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS856 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.4902149.v1
title: FS874 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS874 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.4902152
title: FS877 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS877 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.4902140
title: RNA-seq raw data of maize CMS-C line

description: RNA-seq raw data of biological replicate 1 of cytoplasmic male sterility line C48-2 spikelets at mononuclear stage
DOI: 10.6084/m9.figshare.4902146.v1
title: FS856 contigs and profile databases

description: anvi'o contigs database and profile database for sample FS856 from the Mid-Cayman Rise. See project description for instructions.
DOI: 10.6084/m9.figshare.4902119
title: readme_1

description: code matlab
DOI: 10.6084/m9.figshare.4902104
title: Raw data (In house ELISA based on recombinant ORF2 protein underline high prevalence of IgG anti-Hepatitis E Virus amongst blood donors in South Brazil).xlsx

description: In this excel file we present the experimental raw data of a new indirect ELISA based on a short recombinant peptide derived from the capsid protein of Hepatitis E Virus, genotype 3 (brazilian isolate).
DOI: 10.6084/m9.figshare.4902119.v1
title: readme_1

description: code matlab
DOI: 10.6084/m9.figshare.4902098
title: SimThyr 4.0 Handbook and Reference

description: Full handbook for SimThyr 4.0, RRID:SCR_014351
DOI: 10.6084/m9.figshare.4902080
title: 3daymaps_files.zip

description: This has files needed to process the datasets in controlPNAS, mecamylamine.zip, scopolamine.zip, and control3day.zip, and some instructions. The C program will reverse engineer the TDT data format.
DOI: 10.6084/m9.figshare.4902068
title: Huachuca2009to2011_sppxsite_clean.xlsx

description: This is data on aquatic invertebrate collected from streams in the Huachuca Mountains within the Upper San Pedro River Basin of southwestern Arizona, USA. Each site were sampled multiple times between 2009 and 2011 with a per-stream average of 21 sampling events. <br>More details on the characteristics of the ecosystem, sites, and the sampling techniques are provided in Schriever et al. (2015) "Hydrology shapes taxonomic and functional structure of desert stream invertebrate communities" in Freshwater Science, 34(2):399-409. <br>This dataset was used in Dong et al., (2017) "Importance of Neutral Processes Varies in Time and Space: Evidence from Drylands Stream Ecosystems" PLOS ONE.
DOI: 10.6084/m9.figshare.4902077
title: control3day.zip

description: The data for animals trained for 3 days and given a saline injection on the third day.
DOI: 10.6084/m9.figshare.4902098.v2
title: SimThyr 4.0 Handbook and Reference

description: Full handbook for SimThyr 4.0, RRID:SCR_014351
DOI: 10.6084/m9.figshare.4902080.v1
title: 3daymaps_files.zip

description: This has files needed to process the datasets in controlPNAS, mecamylamine.zip, scopolamine.zip, and control3day.zip, and some instructions. The C program will reverse engineer the TDT data format.
DOI: 10.6084/m9.figshare.4902077.v1
title: control3day.zip

description: The data for animals trained for 3 days and given a saline injection on the third day.
DOI: 10.6084/m9.figshare.4902068.v1
title: Huachuca2009to2011_sppxsite_clean.xlsx

description: This is data on aquatic invertebrate collected from streams in the Huachuca Mountains within the Upper San Pedro River Basin of southwestern Arizona, USA. Each site were sampled multiple times between 2009 and 2011 with a per-stream average of 21 sampling events. <br>More details on the characteristics of the ecosystem, sites, and the sampling techniques are provided in Schriever et al. (2015) "Hydrology shapes taxonomic and functional structure of desert stream invertebrate communities" in Freshwater Science, 34(2):399-409. <br>This dataset was used in Dong et al., (2017) "Importance of Neutral Processes Varies in Time and Space: Evidence from Drylands Stream Ecosystems" PLOS ONE.
DOI: 10.6084/m9.figshare.4902005
title: Optimal Control and Additive Perturbations Help in Estimating Ill-Posed and Uncertain Dynamical Systems

description: Ordinary differential equations (ODE) are routinely calibrated on real data for estimating unknown parameters or for reverse-engineering. Nevertheless, standard statistical techniques can give disappointing results because of the complex relationship between parameters and states, which makes the corresponding estimation problem ill-posed. Moreover, ODE are mechanistic models that are prone to modeling errors, whose influences on inference are often neglected during statistical analysis. We propose a regularized estimation framework, called Tracking, which consists in adding a perturbation (<i>L</i><sup>2</sup> function) to the original ODE. This perturbation facilitates data fitting and represents also possible model misspecifications, so that parameter estimation is done by solving a trade-off between data fidelity and model fidelity. We show that the underlying optimization problem is an optimal control problem that can be solved by the Pontryagin maximum principle for general nonlinear and partially observed ODE. The same methodology can be used for the joint estimation of finite and time-varying parameters. We show, in the case of a well-specified parametric model that our estimator is consistent and reaches the root-<i>n</i> rate. In addition, numerical experiments considering various sources of model misspecifications shows that Tracking still furnishes accurate estimates. Finally, we consider semiparametric estimation on both simulated data and on a real data example. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.4902005.v2
title: Optimal Control and Additive Perturbations Help in Estimating Ill-Posed and Uncertain Dynamical Systems

description: Ordinary differential equations (ODE) are routinely calibrated on real data for estimating unknown parameters or for reverse-engineering. Nevertheless, standard statistical techniques can give disappointing results because of the complex relationship between parameters and states, which makes the corresponding estimation problem ill-posed. Moreover, ODE are mechanistic models that are prone to modeling errors, whose influences on inference are often neglected during statistical analysis. We propose a regularized estimation framework, called Tracking, which consists in adding a perturbation (<i>L</i><sup>2</sup> function) to the original ODE. This perturbation facilitates data fitting and represents also possible model misspecifications, so that parameter estimation is done by solving a trade-off between data fidelity and model fidelity. We show that the underlying optimization problem is an optimal control problem that can be solved by the Pontryagin maximum principle for general nonlinear and partially observed ODE. The same methodology can be used for the joint estimation of finite and time-varying parameters. We show, in the case of a well-specified parametric model that our estimator is consistent and reaches the root-<i>n</i> rate. In addition, numerical experiments considering various sources of model misspecifications shows that Tracking still furnishes accurate estimates. Finally, we consider semiparametric estimation on both simulated data and on a real data example. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.4901864
title: Worldwide Crystalline Permeability Compilation

description: A comprehensive worldwide permeability dataset has been compiled consisting of 29000 in-situ permeabilities from 221 publications and reports and delineating the permeability distribution in crystalline rocks into depths of 2000 mbgs. Please read the short instruction in the Data Reference.pdf!<br>
DOI: 10.6084/m9.figshare.4902005.v1
title: Optimal control and additive perturbations help in estimating ill-posed and uncertain dynamical systems

description: Ordinary Differential Equations (ODE) are routinely calibrated on real data for estimating unknown parameters or for reverse-engineering. Nevertheless, standard statistical techniques can give disappointing results because of the complex relationship between parameters and states, that makes the corresponding estimation problem ill-posed. Moreover, ODE are mechanistic models that are prone to modeling errors, whose influences on inference are often neglected during statistical analysis. We propose a regularized estimation framework, called Tracking, that consists in adding a perturbation (<i>L</i><sup>2</sup> function) to the original ODE. This perturbation facilitates data fitting and represents also possible model misspecifications, so that parameter estimation is done by solving a trade-off between data fidelity and model fidelity. We show that the underlying optimization problem is an optimal control problem, that can be solved by the Pontryagin Maximum Principle for general nonlinear and partially observed ODE. The same methodology can be used for the joint estimation of finite and time-varying parameters. We show, in the case of a well-specified parametric model, that our estimator is consistent and reaches the root-<i>n</i> rate. In addition, numerical experiments considering various sources of model misspecifications shows that Tracking still furnishes accurate estimates. Finally, we consider semiparametric estimation on both simulated data and on a real data example. <i>Supplementary Materials</i>.
DOI: 10.6084/m9.figshare.4901843
title: scopolamine.zip

description: These are the electrophysiological data from the animals given scopolamine on the 3rd behavioral day, with recordings on the 4th.
DOI: 10.6084/m9.figshare.4901840
title: mecamylamine.zip

description: These are the electrophysiological records from animals given mecamylamine on the 3rd behavioral session, with the recordings taken 24h later
DOI: 10.6084/m9.figshare.4900634
title: Using confidence intervals to evaluate the focus alignment of spectrograph detector arrays

description: Dataset containing images taken to align a spectrograph sensor in the best-focus position. All computer code is included to compute the best-focus position in addition to determining confidence intervals to the solution. These confidence intervals provide a statistical measure of the variance, characterizing the precision.<br>An example of use document is also included in the form of an IPython notebook (also in .html format) to provide a brief background to the approach as well as a step-by-step guide to using the code.
DOI: 10.6084/m9.figshare.4901840.v1
title: mecamylamine.zip

description: These are the electrophysiological records from animals given mecamylamine on the 3rd behavioral session, with the recordings taken 24h later
DOI: 10.6084/m9.figshare.4901843.v1
title: scopolamine.zip

description: These are the electrophysiological data from the animals given scopolamine on the 3rd behavioral day, with recordings on the 4th.
DOI: 10.6084/m9.figshare.4900628
title: Polistes dominula differential expression analysis

description: This data set is part of the <em>Polistes dominula</em> genome project, and includes the results of the differential expression analysis described in (Standage <em>et al.</em>, <i>Molecular Ecology</i>, 2016). Specifically, the iLocus sequences used as input (.fa.gz), the genomic position of each iLocus (.gff3.gz), the raw results of the differential expression calls (EBSeq output, -all.tsv), and a table of the significant (FDR &lt; 0.05) calls are provided (-sig05.tsv).
DOI: 10.6084/m9.figshare.4900571
title: Visualizing and understanding l'hopital's rule<sup>‡</sup>

description: This article uses dynamic software in Excel to demonstrate several ways in which graphical and numerical approaches can be introduced both to enhance student understanding of l'Hopital's Rule and to explain why the Rule actually works to give the ‘right’ answers. One of the approaches used is to visualize what is happening by examining the limits with both l'Hopital's Rule and the associated Taylor approximation to the function. The dynamic software allows students to experiment with the ideas.
DOI: 10.6084/m9.figshare.4900634.v2
title: Using confidence intervals to evaluate the focus alignment of spectrograph detector arrays

description: Dataset containing images taken to align a spectrograph sensor in the best-focus position. All computer code is included to compute the best-focus position in addition to determining confidence intervals to the solution. These confidence intervals provide a statistical measure of the variance, characterizing the precision.<br>An example of use document is also included in the form of an IPython notebook (also in .html format) to provide a brief background to the approach as well as a step-by-step guide to using the code.
DOI: 10.6084/m9.figshare.4900571.v1
title: Visualizing and understanding l'hopital's rule<sup>‡</sup>

description: This article uses dynamic software in Excel to demonstrate several ways in which graphical and numerical approaches can be introduced both to enhance student understanding of l'Hopital's Rule and to explain why the Rule actually works to give the ‘right’ answers. One of the approaches used is to visualize what is happening by examining the limits with both l'Hopital's Rule and the associated Taylor approximation to the function. The dynamic software allows students to experiment with the ideas.
DOI: 10.6084/m9.figshare.4900628.v2
title: Polistes dominula differential expression analysis

description: This data set is part of the <em>Polistes dominula</em> genome project, and includes the results of the differential expression analysis described in (Standage <em>et al.</em>, <i>Molecular Ecology</i>, 2016). Specifically, the iLocus sequences used as input (.fa.gz), the genomic position of each iLocus (.gff3.gz), the raw results of the differential expression calls (EBSeq output, -all.tsv), and a table of the significant (FDR &lt; 0.05) calls are provided (-sig05.tsv).
DOI: 10.6084/m9.figshare.4900634.v1
title: Using confidence intervals to evaluate the focus alignment of spectrograph detector arrays

description: Dataset containing images taken to align a spectrograph sensor in the best-focus position. All computer code is included to compute the best-focus position in addition to determining confidence intervals to the solution. These confidence intervals provide a statistical measure of the variance, characterizing the precision.<br>An example of use document is also included in the form of an IPython notebook (also in .html format) to provide a brief background to the approach as well as a step-by-step guide to using the code.
DOI: 10.6084/m9.figshare.4900628.v1
title: Polistes dominula differential expression analysis

description: This data set is part of the <em>Polistes dominula</em> genome project, and includes the results of the differential expression analysis described in (Standage <em>et al.</em>, <i>Molecular Ecology</i>, 2016). Specifically, the iLocus sequences used as input, the raw results of the differential expression calls (EBSeq output), and a table of the significant (FDR &lt; 0.05) calls are provided.
DOI: 10.6084/m9.figshare.4900439
title: A comparison of the performance of 2.5 to 3.5-year-old children without disabilities using animated and cursor-based scanning in a contextual scene

description: Although recent evidence suggests learning demands for children can be reduced by organizing augmentative and alternative communication (AAC) displays in contextual scenes, there is little evidence on how such scenes could be made accessible for children who cannot use direct selection. Using a line drawn scene of a living room, a traditional traveling cursor (a green outline of objects within the scene) was compared with sequential animation—logically matching the function of items in the scene (e.g., hands of a clock moving, a lamp turning on and off, etc.). After three learning sessions, only the matched function animation condition revealed a significant increase in accuracy scores from session 1 to session 3. Age-related trends suggested the mean scores in the cursor-based condition were associated with older children consistently performing at high levels and younger children remaining at low levels, while trends in the animated group were associated with children learning the interface in a way not associated with age. Findings support that enhanced presentations of scanning can increase the transparency of the scanning interface for some children and suggest that contextual scene displays could benefit from animations and sound for children not using direct selection.
DOI: 10.6084/m9.figshare.4900439.v1
title: A comparison of the performance of 2.5 to 3.5-year-old children without disabilities using animated and cursor-based scanning in a contextual scene

description: Although recent evidence suggests learning demands for children can be reduced by organizing augmentative and alternative communication (AAC) displays in contextual scenes, there is little evidence on how such scenes could be made accessible for children who cannot use direct selection. Using a line drawn scene of a living room, a traditional traveling cursor (a green outline of objects within the scene) was compared with sequential animation—logically matching the function of items in the scene (e.g., hands of a clock moving, a lamp turning on and off, etc.). After three learning sessions, only the matched function animation condition revealed a significant increase in accuracy scores from session 1 to session 3. Age-related trends suggested the mean scores in the cursor-based condition were associated with older children consistently performing at high levels and younger children remaining at low levels, while trends in the animated group were associated with children learning the interface in a way not associated with age. Findings support that enhanced presentations of scanning can increase the transparency of the scanning interface for some children and suggest that contextual scene displays could benefit from animations and sound for children not using direct selection.
DOI: 10.6084/m9.figshare.4900373
title: Latitudinal gradient in insect immunity

description: We studied among-population differences of two parameters reflecting constitutive immunity – phenoloxidase (PO) and lytic activity – using common garden design on three distantly related moth species represented by populations ranging from northern Finland to Georgia (Caucasus).