cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16800293.v1
title: Additional file 2 of Determinants of HPV-vaccination uptake and subgroups with a lower uptake in the Netherlands

description: Additional file 2.
DOI: 10.6084/m9.figshare.16800263.v1
title: Additional file 2 of Role of “dual-personality” fragments in HEV adaptation—analysis of Y-domain region

description: Additional file 2 : S2 Figure. Correlation between disordered and phosphorylated residues within HEV YDR (A) JF443720 (GT 1); (B) M74506 (GT 2); (C) AB222182 (GT 3); (D) GU119961 (GT 4); (E) AB573435 (GT 5); (F) AB602441 (GT 6); KJ496143 (GT 7); and (H) KX387865 (GT 8). The prediction of disordered residues was carried out using three members of the family PONDR (Prediction of Natural Disordered Regions), i.e., VLXT, VL3 and VSL2. The specific amino acid position of the prediction phosphorylated residue was carried out using DEPP (Disorder Enhanced Phosphorylation Predictor). The predicted disordered residues are shown with alphabet ‘D’ while the predicted phosphorylated residues in the YDR proteins are marked with asterisk (*). This suggests that the phosphorylated residues are present within the disordered regions of YDR.
DOI: 10.6084/m9.figshare.16800361.v1
title: Additional file 13 of Differences between intrinsic and acquired nucleoside analogue resistance in acute myeloid leukaemia cells

description: Additional file 13: Supplementary Table 4. Characteristics of AML patients analysed in the data presented in Fig. 3.
DOI: 10.6084/m9.figshare.16800361
title: Additional file 13 of Differences between intrinsic and acquired nucleoside analogue resistance in acute myeloid leukaemia cells

description: Additional file 13: Supplementary Table 4. Characteristics of AML patients analysed in the data presented in Fig. 3.
DOI: 10.6084/m9.figshare.16800367
title: Additional file 15 of Differences between intrinsic and acquired nucleoside analogue resistance in acute myeloid leukaemia cells

description: Additional file 15: Supplementary Table 6. Concentrations that reduce the cell viability by 50% (IC50 values), determined by MTT assay after 96 h incubation.
DOI: 10.6084/m9.figshare.16800367.v1
title: Additional file 15 of Differences between intrinsic and acquired nucleoside analogue resistance in acute myeloid leukaemia cells

description: Additional file 15: Supplementary Table 6. Concentrations that reduce the cell viability by 50% (IC50 values), determined by MTT assay after 96 h incubation.
DOI: 10.6084/m9.figshare.16800404
title: Additional file 1 of Neutral and negative mood induction in executive tasks of working memory

description: Additional file 1. Induction group (Negative vs. Neutral) x Tasks Accuracy (Visuospatial vs. Verbal) x Moment (Pre-induction vs. Post-induction). EscalaLikert.: Induction group (Negative vs. Neutral) x Moment (LEAP1 vs. LEAP2) x Expressions (Happy vs. Scared vs. Disgusted vs. Sad vs. Angry). EscalaLikert.: Induction group (Negative vs Neutral) x Moment (List1 vs List2) x Valence Words (Negative vs Neutral vs Positive)
DOI: 10.6084/m9.figshare.16800404.v1
title: Additional file 1 of Neutral and negative mood induction in executive tasks of working memory

description: Additional file 1. Induction group (Negative vs. Neutral) x Tasks Accuracy (Visuospatial vs. Verbal) x Moment (Pre-induction vs. Post-induction). EscalaLikert.: Induction group (Negative vs. Neutral) x Moment (LEAP1 vs. LEAP2) x Expressions (Happy vs. Scared vs. Disgusted vs. Sad vs. Angry). EscalaLikert.: Induction group (Negative vs Neutral) x Moment (List1 vs List2) x Valence Words (Negative vs Neutral vs Positive)
DOI: 10.6084/m9.figshare.16800406
title: Additional file 2 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 2: Table S2 Sequence reads obtained from single-cell amplified genomes (SAGs) and metagenomes.
DOI: 10.6084/m9.figshare.16800403
title: Additional file 1 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 1: Table S1 Cell mock community reference genome.
DOI: 10.6084/m9.figshare.16800403.v1
title: Additional file 1 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 1: Table S1 Cell mock community reference genome.
DOI: 10.6084/m9.figshare.16800406.v1
title: Additional file 2 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 2: Table S2 Sequence reads obtained from single-cell amplified genomes (SAGs) and metagenomes.
DOI: 10.6084/m9.figshare.16800409
title: Additional file 3 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 3: Table S3 Single-cell amplified genome (SAG) to composite SAG.
DOI: 10.6084/m9.figshare.16800409.v1
title: Additional file 3 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 3: Table S3 Single-cell amplified genome (SAG) to composite SAG.
DOI: 10.6084/m9.figshare.16800412
title: Additional file 4 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 4: Table S4 Assembly quality of composite single-cell amplified genomes (CoSAGs) of cell mock community.
DOI: 10.6084/m9.figshare.16800412.v1
title: Additional file 4 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 4: Table S4 Assembly quality of composite single-cell amplified genomes (CoSAGs) of cell mock community.
DOI: 10.6084/m9.figshare.16800418
title: Additional file 6 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 6: Table S5 High-quality (HQ) and medium-quality (MQ) draft genomes (SAG, mgSAG, and sgMAG) constructed using SMAGLinker.
DOI: 10.6084/m9.figshare.16800418.v1
title: Additional file 6 of Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

description: Additional file 6: Table S5 High-quality (HQ) and medium-quality (MQ) draft genomes (SAG, mgSAG, and sgMAG) constructed using SMAGLinker.
DOI: 10.6084/m9.figshare.16800494
title: Additional file 4 of Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids

description: Additional file 4. Excel file related to main figure 6. Extended list of mechanotransduction-associated genes investigated in this study.
DOI: 10.6084/m9.figshare.16800494.v1
title: Additional file 4 of Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids

description: Additional file 4. Excel file related to main figure 6. Extended list of mechanotransduction-associated genes investigated in this study.
DOI: 10.6084/m9.figshare.16800574
title: Additional file 1 of Immunogenicity of a new enhanced tetanus-reduced dose diphtheria-acellular pertussis (Tdap) vaccine against Bordetella pertussis in a murine model

description: Additional file 1. Table S1. Raw data of cell mediated cytokine immune response by cytokine ELISA kit.
DOI: 10.6084/m9.figshare.16800574.v1
title: Additional file 1 of Immunogenicity of a new enhanced tetanus-reduced dose diphtheria-acellular pertussis (Tdap) vaccine against Bordetella pertussis in a murine model

description: Additional file 1. Table S1. Raw data of cell mediated cytokine immune response by cytokine ELISA kit.
DOI: 10.6084/m9.figshare.16800577
title: Additional file 2 of Immunogenicity of a new enhanced tetanus-reduced dose diphtheria-acellular pertussis (Tdap) vaccine against Bordetella pertussis in a murine model

description: Additional file 2. Table S2. B. pertussis clearance was evaluated. The colony forming cells from lungs were counted two times.
DOI: 10.6084/m9.figshare.16800577.v1
title: Additional file 2 of Immunogenicity of a new enhanced tetanus-reduced dose diphtheria-acellular pertussis (Tdap) vaccine against Bordetella pertussis in a murine model

description: Additional file 2. Table S2. B. pertussis clearance was evaluated. The colony forming cells from lungs were counted two times.
DOI: 10.6084/m9.figshare.16800212.v1
title: Additional file 3 of Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities

description: Additional file 3. Table S1. Mock community sequence information and trimmed length positions. Primer information includes the name of each primer in the literature and the associated sequence, read lengths of paired reads, length of the reads after length-trimming by median Q20 score, SRA and Bioproject accessions, and citation. Table S2. Bacteria present within each mock community. Table S3. DADA2 statistics for each pipeline per mock community. Input represents the number of reads used after the trimming and merging/concatenating steps; Filtered is the amount of sequences remaining after DADA2 filtering based on a maxee=2; Denoised is the number of sequences remaining after DADA2 denoising; Merged and % of input merged applies only to pipelines with merging by DADA2 (NMd, LMd , QMd and QdMd); Non-chimeric output sequences were passed into the taxonomic classifier; % output is the percent of sequences from the input left for taxonomic classification. Table S4. Genera that were originally determined as false positives (FP) but have synonyms of taxa from mock communities, and therefore were renamed to match taxa from mock communities (modified names now represent true positives – TPs). Table S5. True positive (TP), false positive (FP), and false negative (FN) genera that are shared and unique between GG and SILVA reference databases. Mocks are grouped per study. Table S6. TP, FP, and FN counts for each pipeline per mock along with the calculated precision, recall, and F-measure. SILVA reference database and an ASV abundance threshold of 0.01% was used to filter out low abundant ASVs before these calculations were performed. Pipelines arranged by descending F-measure score per mock. Table S7. True positive (TP), false positive (FP), and false negative (FN) bacterial genera found in each mock per pipeline with SILVA database.
DOI: 10.6084/m9.figshare.16800604
title: Additional file 2 of A meta-analysis study of the robustness and universality of gut microbiome-metabolome associations

description: Additional file 1: Supplementary Table S1. Description of studies included in the analysis (expansion of Table 1). Table S2. 16S/WGSS data processing notes per dataset. Table S3. Unified genera processing notes. Table S4. Metabolomics processing notes per dataset. Table S5. Metabolite predictability per dataset. Table S6. Random-effects models results. Table S7. Genus feature contributions by permutation analysis. Table S8. Consistent genera contributors. Table S9. Subgroup meta-analysis results.
DOI: 10.6084/m9.figshare.16800604.v1
title: Additional file 2 of A meta-analysis study of the robustness and universality of gut microbiome-metabolome associations

description: Additional file 1: Supplementary Table S1. Description of studies included in the analysis (expansion of Table 1). Table S2. 16S/WGSS data processing notes per dataset. Table S3. Unified genera processing notes. Table S4. Metabolomics processing notes per dataset. Table S5. Metabolite predictability per dataset. Table S6. Random-effects models results. Table S7. Genus feature contributions by permutation analysis. Table S8. Consistent genera contributors. Table S9. Subgroup meta-analysis results.
DOI: 10.6084/m9.figshare.16800665
title: Additional file 2 of Intra-patient stability of tumor mutational burden from tissue biopsies at different time points in advanced cancers

description: Additional file 2: Foundation Medicine and UCSD Cohort Characteristics. Table S1. Patterns of TMB difference based on time between biopsies in the Foundation Medicine cohort. Table S2. Patients with paired tissue biopsy samples in the UCSD cohort. Table S3. Patients with paired tissue biopsy samples in the Foundation Medicine cohort
DOI: 10.6084/m9.figshare.16800665.v1
title: Additional file 2 of Intra-patient stability of tumor mutational burden from tissue biopsies at different time points in advanced cancers

description: Additional file 2: Foundation Medicine and UCSD Cohort Characteristics. Table S1. Patterns of TMB difference based on time between biopsies in the Foundation Medicine cohort. Table S2. Patients with paired tissue biopsy samples in the UCSD cohort. Table S3. Patients with paired tissue biopsy samples in the Foundation Medicine cohort
DOI: 10.6084/m9.figshare.16800692
title: Additional file 10 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 10. Microarray probe-level data from replicate 2 of BT-474 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800692.v1
title: Additional file 10 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 10. Microarray probe-level data from replicate 2 of BT-474 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800695
title: Additional file 11 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 11. Microarray image data from replicate 3 of BT-474 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800695.v1
title: Additional file 11 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 11. Microarray image data from replicate 3 of BT-474 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800698
title: Additional file 12 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 12. Microarray probe-level data from replicate 3 of BT-474 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800698.v1
title: Additional file 12 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 12. Microarray probe-level data from replicate 3 of BT-474 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800701
title: Additional file 13 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 13. Microarray image data from replicate 1 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800704
title: Additional file 14 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 14. Microarray probe-level data from replicate 1 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800701.v1
title: Additional file 13 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 13. Microarray image data from replicate 1 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800704.v1
title: Additional file 14 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 14. Microarray probe-level data from replicate 1 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800710.v1
title: Additional file 16 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 16. Microarray probe-level data from replicate 2 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800707
title: Additional file 15 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 15. Microarray image data from replicate 2 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800710
title: Additional file 16 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 16. Microarray probe-level data from replicate 2 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800713.v1
title: Additional file 17 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 17. Microarray image data from replicate 3 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800716
title: Additional file 18 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 18. Microarray probe-level data from replicate 3 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800707.v1
title: Additional file 15 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 15. Microarray image data from replicate 2 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800713
title: Additional file 17 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 17. Microarray image data from replicate 3 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800716.v1
title: Additional file 18 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 18. Microarray probe-level data from replicate 3 of MCF-7 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800719
title: Additional file 19 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 19. Microarray image data from replicate 1 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800719.v1
title: Additional file 19 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 19. Microarray image data from replicate 1 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800722
title: Additional file 1 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 1. Microarray image data from replicate 1 of BT-474 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800728
title: Additional file 21 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 21. Microarray image data from replicate 2 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800722.v1
title: Additional file 1 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 1. Microarray image data from replicate 1 of BT-474 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.
DOI: 10.6084/m9.figshare.16800728.v1
title: Additional file 21 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 21. Microarray image data from replicate 2 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800734.v1
title: Additional file 23 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 23. Microarray image data from replicate 3 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800725
title: Additional file 20 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 20. Microarray probe-level data from replicate 1 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800725.v1
title: Additional file 20 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 20. Microarray probe-level data from replicate 1 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800731
title: Additional file 22 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 22. Microarray probe-level data from replicate 2 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800731.v1
title: Additional file 22 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 22. Microarray probe-level data from replicate 2 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800734
title: Additional file 23 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 23. Microarray image data from replicate 3 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800737
title: Additional file 24 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 24. Microarray probe-level data from replicate 3 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800737.v1
title: Additional file 24 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 24. Microarray probe-level data from replicate 3 of MCF-7 breast cancer cells grown in static culture.
DOI: 10.6084/m9.figshare.16800740
title: Additional file 25 of Fluid flow exposure promotes epithelial-to-mesenchymal transition and adhesion of breast cancer cells to endothelial cells

description: Additional file 25. Microarray image data from replicate 1 of MDA-MB-231 breast cancer cells exposed to fluid flow in a parallel-plate bioreactor system.