cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20236497.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 165)

description: There are 17 files in this dataset. This is the 165th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.5281/zenodo.6800765
title: Subset de la colección de notas de La Nación

description: Se trata de un subset de notas periodísticas del diario argentino La Nación que cubre desde el 2016 hasta 2019. Contiene las siguientes variables: fecha, titulo, nota.
DOI: 10.5281/zenodo.6800724
title: Subset de la colección de notas de La Nación

description: Se trata de un subset de notas periodísticas del diario argentino La Nación que cubre desde el 2016 hasta 2019. Contiene las siguientes variables: fecha, titulo, nota.
DOI: 10.6084/m9.figshare.15052272
title: Sea level rise and the Great Barrier Reef: the future implications on reef tidal dynamics

description: Raster file output of all models used in the paper "Sea level rise and the Great Barrier Reef: the future implications on reef tidal dynamics", Mawson, Lee, Hill.
DOI: 10.6084/m9.figshare.20236575
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 166)

description: There are 17 files in this dataset. This is the 166th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20236575.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 166)

description: There are 17 files in this dataset. This is the 166th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.34740/kaggle/dsv/3908564
title: Myanmar 2020 election result
DOI: 10.15151/esrf-es-771276720
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, National Research Council and Hospital research centres in Italy. The laboratories apply various diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes, such as crystal growth and polymer association and formation of nanostructures.
DOI: 10.15151/esrf-es-771432447
title: The Netherlands BAG

description: The Netherlands BAG includes groups situated at five Dutch universities (Utrecht, Groningen, Amsterdam, Wageningen and Eindhoven) and at the Netherlands Cancer Institute in Amsterdam, with a total of twelve PIs. The structural biology research carried out in these groups is highly diverse, including prokaryotic and eukaryotic proteins with a strong focus on targets and processes of biomedical relevance. Central to many projects are protein receptors and their interactions with other proteins and with small molecule modulators. An additional major research area concerns structure-based protein engineering and design aiming at the characterization and engineering of new enzymes for green chemistry and new-to-nature reactions. Projects deal with membrane and soluble proteins, cell surface receptors, and protein-protein, protein-ribonucleotide, protein-drug and enzyme-ligand complexes.
DOI: 10.15151/esrf-es-771457944
title: BAG BARCELONA

description: BAG Barcelona is constituted by 9 groups that belong to the Institute of Molecular Biology Barcelona from the Spanish Research Council (IBMB-CSIC), the Institute for Research in Biomedicine (IRB), and the Research Institute from Hospital Santa Creu i Sant Pau (HSCSP-IR). The main subjects of research are protein/DBA complexes, molecular machines, compounds of viruses, and the molecular mechanisms of proteases and other enzymes. Our Scientific results strongly rely on the high quality data and excellent performance and support of ESRF macromolecular crystallography beamlines.
DOI: 10.15151/esrf-es-866428467
title: Structural Biology in Marseille

description: Our BAG groups 8 teams from 4 Marseille laboratories. Research themes deal with infection, health and biotechnology. For 107 projects within this proposal we foresee 10 MX and 2 SAXS shifts for the next beam time allocation period. This amount of beam time reflects what we had asked for in the previous proposal round. Two teams of the BAG combine structural biology with medicinal chemistry and beam time at MASSIF for large ligand-screening campaigns will mostly suit their research purposes. Access to beamlines with tuneable energy will be instrumental for projects requiring phasing by MAD or MIRAS. One team uses exclusively Bio-SAXS and allocation of one shift/session would be welcomed. Remote access for MX sessions has become very popular whereas scientists prefer to be on-site for Bio-SAXS experiments. We are grateful to the ESRF staff for always being forthcoming with regard to scheduling, logistics and experiments, allowing the BAG to produce good Science in a comfortable setting.
DOI: 10.5281/zenodo.6800784
title: Data for: Seasonal dynamics of faunal diversity and population ecology in an estuarine seagrass bed

description: These are the data used in the analyses described in the paper titled "Seasonal dynamics of faunal diversity and population ecology in an estuarine seagrass bed", accepted at Estuaries and Coasts. We acknowledge the tangata whenua for the rohe in which these data were collected, Ngāi Tārewa and Ngāti Īrakehu. We thank the Akaroa Taiāpure for their support of this research. The data included are: Raw count data of taxa for each tow, associated with additional metadata including the date of collection, tow coordinates, and estimated seagrass cover (MonthlyRawSampling_Duvauchelle_2020.csv). This data was put through cleaning steps outlined in the file docs/dataCleaning.Rmd prior to being used in any analyses. The cleaned community composition data (cleanedCommunity.csv), output from docs/dataCleaning.Rmd and used in the downstream community and population analyses. The GPS coordinates for the tows (gpsdat.csv). These were extracted from the raw data in the data cleaning process. NZsyngnathids_measurements.csv contains the measurements of the pipefish from images. These data also underwent a cleaning process documented in docs/dataCleaning.Rmd. The cleaned pipefish trait data (pipefishTraits.csv), output from docs/dataCleaning.Rmd and used in the downstream population analysis documented in docs/populationAnalyses.Rmd.<br>
DOI: 10.15151/esrf-es-817603853
title: Residual strain and whiskers growth in Sn layer

description: Whiskers (long single crystal filaments of micro/submicrometer diameter) growth on Sn coating is a major technological threat for electronic/electrical devices. Despite numerous studies during the last 70 years, quantitative modelling is not yet achieved. One major identified driving force is the presence of compressive stress and/or stress gradients within the Sn layer. Several industrial solid state soldering processes (f.e. Press-Fit) generates residual stress of unknown magnitude. The purpose of this proposal is to quantify, using 2D and 3D microLaue diffraction techniques, the residual strain fields around well controlled deformed areas. Two technologically relevant microstructures of Sn thin films will be studied. A better understanding of the role of stress and its threshold to nucleate whiskers is therefore expected.
DOI: 10.5281/zenodo.6800783
title: Data for: Seasonal dynamics of faunal diversity and population ecology in an estuarine seagrass bed

description: These are the data used in the analyses described in the paper titled "Seasonal dynamics of faunal diversity and population ecology in an estuarine seagrass bed", accepted at Estuaries and Coasts. We acknowledge the tangata whenua for the rohe in which these data were collected, Ngāi Tārewa and Ngāti Īrakehu. We thank the Akaroa Taiāpure for their support of this research. The data included are: Raw count data of taxa for each tow, associated with additional metadata including the date of collection, tow coordinates, and estimated seagrass cover (MonthlyRawSampling_Duvauchelle_2020.csv). This data was put through cleaning steps outlined in the file docs/dataCleaning.Rmd prior to being used in any analyses. The cleaned community composition data (cleanedCommunity.csv), output from docs/dataCleaning.Rmd and used in the downstream community and population analyses. The GPS coordinates for the tows (gpsdat.csv). These were extracted from the raw data in the data cleaning process. NZsyngnathids_measurements.csv contains the measurements of the pipefish from images. These data also underwent a cleaning process documented in docs/dataCleaning.Rmd. The cleaned pipefish trait data (pipefishTraits.csv), output from docs/dataCleaning.Rmd and used in the downstream population analysis documented in docs/populationAnalyses.Rmd.<br>
DOI: 10.7910/dvn/n3kd8v
title: Partners with Benefits: When Multinational Corporations Succeed in Authoritarian Courts

description: Replication notes are embedded in the R file. The online appendix is also included.
DOI: 10.23729/cf5d1f55-7320-4a93-8abb-74acea5e8f86
title: Kalankasvatuksen kehittämishanke Uudessakaupungissa

description: Uudenkaupungin kaupunginhallitus käynnisti päätöksellään 4.6.2018 hankkeen, jossa kaupungin omistuksessa olevien vesialueiden soveltuvuutta kestävään vesiviljelyyn selvitetään. Hankkeen tarkoituksena on edistää alueella toimivaa kalataloutta kokonaisvaltaisesti merialueen suunnittelun ja luvituksen avulla. Hanke on saanut rahoitusta Euroopan meri- ja kalatalousrahastosta. Luonnonvarakeskus osallistuu hankkeeseen tunnistamalla kalankasvatukseen mahdollisesti soveltuvia alueita Uudenkaupungin rannikolta. Tällä sivulla olevissa liitteissä esitellään Luonnonvarakeskuksen kehittämä FINFARMGIS-menetelmä kalankasvatukselle soveltuvien alueiden tunnistamiseen ja sen käyttö uudenkaupungin hankkeessa. Lisätietoja: Lauri Niskanen lauri.niskanen@luke.fi / 050 569 6362
DOI: 10.5519/qd.07nlpkj8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5281/zenodo.6791873
title: Systematic analysis of disease-linked rare germline variants reveals new classes of cancer predisposing genes

description: GEMs_Liver-HCC: 312 cancer patient-specific genome-scale metabolic models (GEMs) for Liver-HCC reconstructed using the RNA-seq data from PCAWG-TCGA Liver-HCC samples and generic human GEM 'Recon 2M.2' GEMs_Lung-SCC: 493 cancer patient-specific GEMs for Lung-SCC reconstructed using the RNA-Seq data from PCAWG-TCGA Lung-SCC samples and generic human GEM 'Recon 2M.2' All the patient-specific GEMs were generated using a previously developed method (i.e., tINIT algorithm with a rank-based weight function), which is available at https://bitbucket.org/kaistmbel/recon-manager.
DOI: 10.5281/zenodo.6791872
title: Systematic analysis of disease-linked rare germline variants reveals new classes of cancer predisposing genes

description: GEMs_Liver-HCC: 312 cancer patient-specific genome-scale metabolic models (GEMs) for Liver-HCC reconstructed using the RNA-seq data from PCAWG-TCGA Liver-HCC samples and generic human GEM 'Recon 2M.2' GEMs_Lung-SCC: 493 cancer patient-specific GEMs for Lung-SCC reconstructed using the RNA-Seq data from PCAWG-TCGA Lung-SCC samples and generic human GEM 'Recon 2M.2' All the patient-specific GEMs were generated using a previously developed method (i.e., tINIT algorithm with a rank-based weight function), which is available at https://bitbucket.org/kaistmbel/recon-manager.
DOI: 10.6084/m9.figshare.20236611
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 167)

description: There are 17 files in this dataset. This is the 167th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20236611.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 167)

description: There are 17 files in this dataset. This is the 167th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.26180/20145620.v1
title: Radiative transfer model of the IM Lupi protoplanetary disc with a 3 Jupiter-mass planet, as published in Verrios et al. (2022)

description: Contains synthetic images of IM Lupi protoplanetary disc at wavelengths of 1.6 microns (data_1.6/RT.fits.gz), 1.25 mm (data_1250/RT.fits.gz) and a datacube of the synthetic 12CO 2-1 line emission from our model. The directory also contains the parameter files used to setup and perform the simulation (using the phantom smoothed particle hydrodynamics code: https://github.com/danieljprice/phantom) and to perform the radiative transfer, using the MCFOST code (https://github.com/cpinte/mcfost)
DOI: 10.5281/zenodo.6800916
title: measurement data for sublingual artery

description: This is a dataset for the position of sublingual artery relative to mandibular bone.
DOI: 10.5281/zenodo.6800915
title: measurement data for sublingual artery

description: This is a dataset for the position of sublingual artery relative to mandibular bone.
DOI: 10.5281/zenodo.4736486
title: Adolescents and Young Adults (AYA) melanoma: Evaluation of the characteristics, treatment strategies, prognostic factors in a monocentric retrospective study

description: Melanoma is rare in children, it has greater incidence in adolescents and young adults (AYA). Few studies have specifically addressed the topic of AYA melanoma. The aim of this study is to describe characteristics, treatment, and prognosis of a series of cases of melanoma in adolescents and young adults in order to contribute to the investigation of this malignancy and provide better patient care. This is a retrospective cohort-based study including patients over 15 years of age at diagnosis from Veneto Region, who received diagnosis and/or treatment from our institutions between 1998 and 2014. We divided the patients in three subgroups: adolescents (15-25 years), young adults (26-39 years) and adults (more than 39 years). Among the three groups there was statistically significant difference in gender, primary site, Breslow thickness, ulceration, pTNM stage and tumoral subtype, disease-specific overall survival and disease-free survival.
DOI: 10.6084/m9.figshare.20079476
title: Supplementary Material for: ICOS-positive regulatory T cells in hepatocellular carcinoma: the perspective from digital pathology analysis

description: Introduction: Inducible co-stimulator (ICOS), an important co-stimulatory receptors on effector T cells (Teffs), may also contribute to tumor growth due to its high expression on regulatory T cells (Tregs). This study explored the clinical significance of ICOS-expressing Tregs in hepatocellular carcinoma (HCC). Methods: Tumor tissues from HCC patients who received curative hepatectomy were obtained at a referral center. Dual immunohistochemistry was performed to evaluate the expression of ICOS and Foxp3. The cell densities and proximities between stained cells in regions of interest were measured by digital pathology and the associations with clinical outcome were analyzed. Results: A total of 142 patients (male: female= 112: 30, median age of 61.0 years) were enrolled. Among them, 87 (61.3%) had chronic hepatitis B virus infection and 33 (23.2%) had chronic hepatitis C infection. Low AFP level (&lt;20 ng/ml) and early-stage were significantly associated with improved overall survival (OS). The density of ICOS＋Foxp3＋ cells and the ratio of ICOS+Foxp3+/total Foxp3+ cells were significantly higher (p&lt;0.001) in the tumor center than in the peritumor area. Patients with a high density of ICOS＋Foxp3＋ cells or a high ratio of ICOS+Foxp3+/total Foxp3+ cells in the tumor center trended to have a shorter OS. A shorter distance between ICOS＋Foxp3＋ cells and ICOS＋Foxp3－ cells (likely Teffs) in the tumor center was significantly associated with a shorter OS (p=0.030), suggesting active immunosuppression of ICOS＋ Tregs on ICOS＋ Teffs. Conclusion: An increased abundance of ICOS＋ Tregs in the tumor center in comparison to the peritumor area indicates a strong immunosuppressive tumor microenvironment of HCC. A high proportion of ICOS+Foxp3+ cells and a shorter distance between ICOS+ Tregs and other ICOS+ cells were associated with a poor OS, suggesting that depleting ICOS+ Tregs might provide clinical benefit for patients with HCC.
DOI: 10.6084/m9.figshare.20236701
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 168)

description: There are 17 files in this dataset. This is the 168th part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.