cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11778885.v1
title: The clinical and humanistic burden of cutaneous T-cell lymphomas and response to conventional and novel therapies: results of a systematic review

description: <b>Objectives</b>: To summarize the impact of relapsed/refractory primary cutaneous T-cell lymphomas (CTCL) on quality of life (QoL) and the efficacy of available treatments in two systematic reviews (SRs). <b>Methods</b>: Searches were performed on 16 January 2018 and 23 January 2018, respectively, in Medline, Medline in process, the Cochrane database, and EconLit. Studies reporting QoL outcomes in adults with CTCL or treatment efficacy in relapsed/refractory CTCL were included. <b>Results</b>: Based on 15 QoL studies, CTCL symptoms/complications negatively affect patients’ physical, emotional, and social functioning. Skin problems pose considerable symptom burden, while advanced disease stage is associated with poorer QoL. CTCL negatively affects caregivers, primarily through family dynamics and relationships. The clinical efficacy SR included 72 publications covering 23 therapies. Overall response rate (ORR) ranged from 14% (belinostat) to 95% (total skin electron beam therapy). ORRs &gt;50% were reported for several therapies including brentuximab vedotin (50–78%) and bexarotene (39–86%). Over half (13 of 23 therapies) had ORRs &lt;30%. Median progression-free survival varied between treatments (3.5–116.4 months) and was &gt;20 months for brentuximab vedotin and alemtuzumab. <b>Conclusion</b>: CTCL negatively affects patients’ and caregivers’ QoL. A considerable proportion of patients have no response or no sustainable response to current treatments.
DOI: 10.6084/m9.figshare.11778852
title: gebook.dqb

description: INPUT FILE FOR DISQUAC
DOI: 10.6084/m9.figshare.11778852.v1
title: gebook.dqb

description: INPUT FILE FOR DISQUAC
DOI: 10.6084/m9.figshare.11778762
title: A design of a fixed bed plasma DRIFTS cell for studying the NTP-assisted heterogeneously catalysed reactions

description: Dataset is included and named as presented in the paper.<br>PowerPoint with figures are also added.
DOI: 10.6084/m9.figshare.11778669
title: Metadata record for: The sequence and de novo assembly of the wild yak genome

description: This dataset contains key characteristics about the data described in the Data Descriptor The sequence and de novo assembly of the wild yak genome. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11778552
title: Data for Keiser and Pruitt 2014 - Behavioral Ecology

description: This is the dataset provided to me by Jonathan Pruitt to analyze and write the associated manuscript.<br>
DOI: 10.6084/m9.figshare.11778552.v1
title: Data for Keiser and Pruitt 2014 - Behavioral Ecology

description: This is the dataset provided to me by Jonathan Pruitt to analyze and write the associated manuscript.<br>
DOI: 10.6084/m9.figshare.11778669.v2
title: Metadata record for: The sequence and de novo assembly of the wild yak genome

description: This dataset contains key characteristics about the data described in the Data Descriptor The sequence and de novo assembly of the wild yak genome. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11778540
title: Data for Sweeney et al 2013 - Behavioral Ecology

description: One file contains the exact dataset provided to me by Jonathan N Pruitt. These data were collected by undergraduate researchers, curated by Pruitt, and then given to Keiser to help analyze and write the manuscript.<br><br>Another file contains the same data but errors discovered later are highlighted and described.<br>A third file ("ID descriptions from Pruitt") was provided by Pruitt later showing which spiders were replaced by a new set before the mesocosm experiment.<br>
DOI: 10.6084/m9.figshare.11778543
title: Coefficients_validated_lassosum_cvd_UK_Biobank.csv

description: Coefficients of the Polygenic Risk Score of Cardiovascular Disease estimated using lassosum on 1,037,385 variants with base summary statistics from the CARDIoGRAMplusC4D 1000 Genomes-based GWAS on Coronary Artery Disease, a validation set from UK Biobank (33,458 prevalent CVD cases and 33,458 age and sex frequency-matched controls) and the Linkage Disequilibrium reference panel from the 1000 Genomes European sub-population. Calibrated lassosum parameters are s=0.9 and lambda=0.00207.
DOI: 10.6084/m9.figshare.11778669.v1
title: Metadata record for: The sequence and de novo assembly of the wild yak genome

description: This dataset contains key characteristics about the data described in the Data Descriptor The sequence and de novo assembly of the wild yak genome. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11778543.v1
title: Coefficients_validated_lassosum_cvd_UK_Biobank.csv

description: Coefficients of the Polygenic Risk Score of Cardiovascular Disease estimated using lassosum on 1,037,385 variants with base summary statistics from the CARDIoGRAMplusC4D 1000 Genomes-based GWAS on Coronary Artery Disease, a validation set from UK Biobank (33,458 prevalent CVD cases and 33,458 age and sex frequency-matched controls) and the Linkage Disequilibrium reference panel from the 1000 Genomes European sub-population. Calibrated lassosum parameters are s=0.9 and lambda=0.00207.
DOI: 10.6084/m9.figshare.11778534
title: Coefficients_validated_lassosum_cad_UK_Biobank.csv

description: Coefficients of the Polygenic Risk Score of Coronary Artery Disease estimated using lassosum on 1,037,385 variants with base summary statistics from the CARDIoGRAMplusC4D 1000 Genomes-based GWAS on Coronary Artery Disease, a validation set from UK Biobank (15,947 prevalent CAD cases and 15,947 age and sex frequency-matched controls) and the Linkage Disequilibrium reference panel from the 1000 Genomes European sub-population. Calibrated lassosum parameters are s=0.5 and lambda=0.00428.
DOI: 10.6084/m9.figshare.11778534.v1
title: Coefficients_validated_lassosum_cad_UK_Biobank.csv

description: Coefficients of the Polygenic Risk Score of Coronary Artery Disease estimated using lassosum on 1,037,385 variants with base summary statistics from the CARDIoGRAMplusC4D 1000 Genomes-based GWAS on Coronary Artery Disease, a validation set from UK Biobank (15,947 prevalent CAD cases and 15,947 age and sex frequency-matched controls) and the Linkage Disequilibrium reference panel from the 1000 Genomes European sub-population. Calibrated lassosum parameters are s=0.5 and lambda=0.00428.
DOI: 10.6084/m9.figshare.11778540.v1
title: Data for Sweeney et al 2013 - Behavioral Ecology

description: This is the exact dataset provided to me by Jonathan N Pruitt. These data were collected by undergraduate researchers, curated by Pruitt, and then given to me to help analyze and write the manuscript.<br>
DOI: 10.6084/m9.figshare.11778486
title: Extended Data - Delphi Panel ISP

description: IntelliSpace Portal (ISP) is an advanced visualization platform that offers a single integrated solution designed to help physicians work more efficiently. This study aimed to develop a consensus statement on the clinical and economic benefits of two Intellispace Portal (ISP) applications (computed tomography (CT) transcatheter aortic-valve implantation (TAVI) and Spectral CT) applications.
DOI: 10.6084/m9.figshare.11778540.v3
title: Data for Sweeney et al 2013 - Behavioral Ecology

description: One file contains the exact dataset provided to me by Jonathan N Pruitt. These data were collected by undergraduate researchers, curated by Pruitt, and then given to Keiser to help analyze and write the manuscript.<br><br>Another file contains the same data but errors discovered later are highlighted and described.<br>A third file ("ID descriptions from Pruitt") was provided by Pruitt later showing which spiders were replaced by a new set before the mesocosm experiment.<br>
DOI: 10.6084/m9.figshare.11778540.v2
title: Data for Sweeney et al 2013 - Behavioral Ecology

description: One file contains the exact dataset provided to me by Jonathan N Pruitt. These data were collected by undergraduate researchers, curated by Pruitt, and then given to me to help analyze and write the manuscript.<br><br>Another file contains the same data but errors discovered later are highlighted and described.<br>
DOI: 10.6084/m9.figshare.11778399
title: macroecology and macroevolution of body size in Anolis lizards

description: These data and R codes were used in Velasco et al. (2020). Macroecology and macroevolution of body size in Anolis lizards. Ecography. <br><br>
DOI: 10.6084/m9.figshare.11778486.v1
title: Extended Data - Delphi Panel ISP

description: IntelliSpace Portal (ISP) is an advanced visualization platform that offers a single integrated solution designed to help physicians work more efficiently. This study aimed to develop a consensus statement on the clinical and economic benefits of two Intellispace Portal (ISP) applications (computed tomography (CT) transcatheter aortic-valve implantation (TAVI) and Spectral CT) applications.
DOI: 10.6084/m9.figshare.11778213
title: VSAD - Dataset

description: This dataset contains the data from : <b> </b> <b>Lacroix, E., Cornet, S., Deggouj, N., Edwards, M. “Visuo-Spatial Abilities Diagnosis - Test (VSAD): Evaluate the potential cognitive difficulties of children with vestibular impairment through a new tablet-based computerised test battery”. </b> <b> </b> <b>(Currently in submission)</b> Data have been generated with the VSAD-Test using the Metrisquare DiagnosIS software (www.metrisquare.net). Access to the test is free of charge but requires author approval. Contact us for a request to use the VSAD: emile.lacroix@uclouvain.be; martin.edwards@uclouvain.be<br>
DOI: 10.6084/m9.figshare.11778213.v1
title: VSAD-Test

description: This dataset contains the data from : <b> </b> <b>Lacroix, E., Cornet, S., Deggouj, N., Edwards, M. “Visuo-Spatial Abilities Diagnosis - Test (VSAD): Evaluate the potential cognitive difficulties of children with vestibular impairment through a new tablet-based computerised test battery”. </b> <b> </b> <b>(Currently in submission)</b> Data have been generated with the VSAD-Test using the Metrisquare DiagnosIS software (www.metrisquare.net). Access to the test is free of charge but requires author approval. Contact us for a request to use the VSAD: emile.lacroix@uclouvain.be; martin.edwards@uclouvain.be<br>
DOI: 10.6084/m9.figshare.11778006
title: Supplementary Tables 1-3 from A new fungal clade helps reconstructing the tree of Fungi and the evolution of the flagellum in Holomycota

description: Supplementary Tables 1-3 from A new fungal clade helps reconstructing the tree of Fungi and the evolution of the flagellum in Holomycota<br>
DOI: 10.6084/m9.figshare.11778006.v1
title: Supplementary Tables 1-3 from A new fungal clade helps reconstructing the tree of Fungi and the evolution of the flagellum in Holomycota

description: Supplementary Tables 1-3 from A new fungal clade helps reconstructing the tree of Fungi and the evolution of the flagellum in Holomycota<br>
DOI: 10.6084/m9.figshare.11777952
title: sperm count

description: sperm count<br>
DOI: 10.6084/m9.figshare.11777931
title: ejaculate weight

description: ejaculate weight
DOI: 10.6084/m9.figshare.11777952.v1
title: sperm count

description: sperm count<br>
DOI: 10.6084/m9.figshare.11777919
title: behavior

description: behavior
DOI: 10.6084/m9.figshare.11777916
title: recessive load

description: recessive load
DOI: 10.6084/m9.figshare.11777919.v1
title: behavior

description: behavior
DOI: 10.6084/m9.figshare.11777913
title: Test
DOI: 10.6084/m9.figshare.11777916.v1
title: recessive load

description: recessive load
DOI: 10.6084/m9.figshare.11777910
title: dominant load

description: dominant load
DOI: 10.6084/m9.figshare.11777913.v1
title: Volume load post hoc

description: HTML file 2 for publication by Jakobsson, Theos & Malm 2020.
DOI: 10.6084/m9.figshare.11777901
title: Supplementary Material for: Lack of Association between Pretransplant Donor-Specific Antibodies and Posttransplant Kidney Outcomes in Simultaneous Liver-Kidney Transplant Recipients with Rabbit Anti-Thymocyte Globulin Induction and Steroid-Free Protocol

description: <b><i>Introduction and Objective:</i></b> The impact of pretransplant donor-specific antibodies (DSAs), especially class II DSAs, on kidney allograft outcomes remains unclear in simultaneous liver-kidney transplantation (SLKT) recipients. <b><i>Methods:</i></b> We examined 85 recipients who consecutively underwent SLKT between 2009 and 2018 in our center. Associations between pretransplant DSA and worsening kidney function (WKF), kidney allograft loss, composite kidney outcome (WKF and/or antibody-mediated rejection and/or death-censored kidney allograft loss), death with functioning graft, and overall mortality were examined in survival analysis. WKF was defined as an eGFR decrease of 30% or greater from baseline, or 2 or more episodes of proteinuria, at least 90 days apart from each other. <b><i>Results:</i></b> The mean age at SLKT was 56 ± 10 years, and 62% of the recipients were male. More than one quarter (26%) of our recipients were African American. The 2 major causes of end-stage liver disease were hepatitis C (28%) and alcoholic hepatitis (26%). Nineteen recipients (22%) had pretransplant DSAs at the time of SLKT. The DSA(+) group and DSA(−) group had similar risk of WKF (unadjusted model: hazard ratio [HR] = 0.77, 95% confidence interval [CI]: 0.29–2.05 and adjusted model: HR = 0.36, 95% CI: 0.12–1.08); similar risk of composite kidney outcome (unadjusted model: HR = 1.04, 95% CI: 0.45–2.43 and adjusted model: HR = 0.53, 95% CI: 0.20–1.39); and similar risk of overall death (unadjusted model: HR = 1.23, 95% CI: 0.45–3.36 and adjusted model: HR = 1.28, 95% CI: 0.42–3.87). We found similar results when comparing different DSA subclasses (class I and II DSAs) with recipients without DSAs. <b><i>Conclusions:</i></b> The presence of pretransplant DSAs was not associated with worse kidney allograft outcomes from our single-center experience. Further prospective larger studies are strongly warranted.
DOI: 10.6084/m9.figshare.11777874
title: Supplementary Material for: Cardiac-Specific Caveolin-3 Overexpression Prevents Post-Myocardial Infarction Ventricular Arrhythmias by Inhibiting Ryanodine Receptor-2 Hyperphosphorylation

description: <b><i>Introduction:</i></b> Ventricular arrhythmia is the most important risk factor for sudden cardiac death (SCD) after acute myocardial infarction (MI) worldwide. However, the molecular mechanisms underlying these arrhythmias are complex and not completely understood. <b><i>Objective:</i></b> Here, we evaluated whether caveolin-3 (Cav3), the structural protein of caveolae, plays an important role in the therapeutic strategy for ventricular arrhythmias. <b><i>Methods:</i></b> A model of cardiac-specific overexpression of Cav3 was established to evaluate the incidence of ventricular arrhythmias after MI in mice. Ca<sup>2+</sup> imaging was employed to detect the propensity of adult murine cardiomyocytes to generate arrhythmias, and immunoprecipitation and immunofluorescence were used to determine the relationship of proteins. Additionally, qRT-PCR and western blotting were used to detect the mRNA and protein expression. <b><i>Results:</i></b> We found that cardiac-specific overexpression of Cav3 delivered by a recombinant adeno-associated viral vector reduced the incidence of ventricular arrhythmias and SCD after MI in mice. Ca<sup>2+</sup> imaging and western blotting revealed that overexpression of Cav3 reduced diastolic spontaneous Ca<sup>2+</sup> waves by inhibiting the hyperphosphorylation of ryanodine receptor-2 (RyR2) at Ser2814, rather than at Ser2808, compared to in rAAV-red fluorescent protein control mice. Furthermore, we demonstrated that Cav3-regulated RYR2 hyperphosphorylation relied on plakophilin-2 in hypoxia-stimulated cultured cardiomyocytes by western blotting, immunoprecipitation, and immunofluorescence in vitro. <b><i>Conclusions:</i></b> Our results suggested a novel role for Cav3 in the prevention of ventricular arrhythmias, thereby identifying a new target for preventing SCD after MI.
DOI: 10.6084/m9.figshare.11777859
title: Test2
DOI: 10.6084/m9.figshare.11777859.v1
title: Volume load LMM

description: HTML-file 1 for submission by Jakobsson, Theos & Malm 2020.
DOI: 10.6084/m9.figshare.11777784
title: Velocity and attenuation of P wave in sands

description: Phase velocity and quality factor of P wave in unconsolidatedToyoura sands and compressed glass beads.
DOI: 10.6084/m9.figshare.11777784.v2
title: Velocity and attenuation of P wave in sands

description: Phase velocity and quality factor of P wave in unconsolidatedToyoura sands and compressed glass beads.
DOI: 10.6084/m9.figshare.11777733
title: Philippines elevation data

description: Altitude data from SRTM downloaded from raster R package - stored here for markdown file.
DOI: 10.6084/m9.figshare.11777730
title: Widgets mapping and matching rate over consecutive releases

description: Each widget of each release of an application has been mapped to the most similar one in the following release, applying a similarity criterion based on how frequently some of the View class widget attributes change over the application releases.<br>This dataset analyses 5 different application found on github, having between 9 and 128 tagged releases.
DOI: 10.6084/m9.figshare.11777697
title: Papua New Guinea elevation data

description: Altitude data from SRTM downloaded from raster R package - stored here for markdown file.
DOI: 10.6084/m9.figshare.11777727
title: Evolution of Android applications layouts

description: This is a .csv file reporting data about the evolution of Android applications layouts. In particular, it focuses on added, deleted and modified lines of xml layout files in each transition from a release of the app to the following one.This dataset contains data about 705 Android projects found on github.
DOI: 10.6084/m9.figshare.11777730.v2
title: Widgets mapping and matching rate over consecutive releases

description: Each widget of each release of an application has been mapped to the most similar one in the following release, applying a similarity criterion based on how frequently some of the View class widget attributes change over the application releases.<br>This dataset analyses 5 different application found on github, having between 9 and 128 tagged releases.
DOI: 10.6084/m9.figshare.11777727.v2
title: Evolution of Android applications layouts

description: This is a .csv file reporting data about the evolution of Android applications layouts. In particular, it focuses on added, deleted and modified lines of xml layout files in each transition from a release of the app to the following one.This dataset contains data about 705 Android projects found on github.
DOI: 10.6084/m9.figshare.11777730.v1
title: Widgets mapping and matching rate over consecutive releases [Thesis Appendix 2]

description: Each widget of each release of an application has been mapped to the most similar one in the following release, applying a similarity criterion based on how frequently some of the View class widget attributes change over the application releases.<br>This dataset analyses 5 different application found on github, having between 9 and 128 tagged releases.
DOI: 10.6084/m9.figshare.11777658
title: Australia elevation data

description: Altitude data from SRTM downloaded from raster R package - stored here for markdown file.
DOI: 10.6084/m9.figshare.11777646
title: Malaysia elevation data

description: Altitude data from SRTM downloaded from raster R package - stored here for markdown file.
DOI: 10.6084/m9.figshare.11777658.v1
title: Australia elevation data

description: Altitude data from SRTM downloaded from raster R package - stored here for markdown file.
DOI: 10.6084/m9.figshare.11777634
title: GSE_analysis_400_testing_jobads.xlsx

description: The data in this file is the processed content of 400 job advertisements for software testers. The data is collected from 33 countries, in between 2016 and 2017. The content of the ads was split into skills and skill-categories.We used the content of the file to group the skills and to analyse the skill requirement in the global software engineering cotext.
DOI: 10.6084/m9.figshare.11777640
title: Supplemental table 1

description: <b>Supplemental table 1 </b>Primers for qPCR assay of glucose metabolism related genes.<br><br><br>
DOI: 10.6084/m9.figshare.11777631
title: Assemblies for isolates sequenced by PacBio/Illumina technologies (n=21)

description: Assemblies for isolates sequenced by PacBio/Illumina technologies (n=21) for "Genomic epidemiology of complex, multi-species, plasmid-borne blaKPC carbapenemase in Enterobacterales in the UK, 2009-2014" by<br>Stoesser N/Phan HTT et al. on behalf of the TRACE Investigators’ Group<br><br>
DOI: 10.6084/m9.figshare.11777634.v2
title: GSE_analysis_400_testing_jobads.xlsx

description: The data in this file is the processed content of 400 job advertisements for software testers. The data is collected from 33 countries, in between 2016 and 2017. The content of the ads was split into skills and skill-categories.We used the content of the file to group the skills and to analyse the skill requirement in the global software engineering cotext.
DOI: 10.6084/m9.figshare.11777640.v1
title: Supplementary tables

description: <b>Supplementary table 1 </b>Primers for qPCR assay of glucose metabolism related genes.<br><b>Supplementary table 2 </b>The DNA methylation level of<b> </b>DMRs related promoters.<br><br><b>Supplementary table 3 </b>The DNA methylation level of DMRs related genes.<br>
DOI: 10.6084/m9.figshare.11777631.v1
title: Assemblies for isolates sequenced by PacBio/Illumina technologies (n=21)

description: Assemblies for isolates sequenced by PacBio/Illumina technologies (n=21) for "Genomic epidemiology of complex, multi-species, plasmid-borne blaKPC carbapenemase in Enterobacterales in the UK, 2009-2014" by<br>Stoesser N/Phan HTT et al. on behalf of the TRACE Investigators’ Group<br><br>
DOI: 10.6084/m9.figshare.11777634.v1
title: GSE_analysis_400_testing_jobads.xlsx

description: The data in this file is the processed content of 400 job advertisements for software testers. The data is collected from 33 countries, in between 2016 and 2017. The content of the ads was split into skills and skill-categories.We used the content of the file to group the skills and to analyse the skill requirement in the global software engineering cotext.
DOI: 10.6084/m9.figshare.11777640.v2
title: Supplementary tables

description: <b>Supplemental table 1 </b>Primers for qPCR assay of glucose metabolism related genes.<br><br>