cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10204050
title: Fluorinated derivatives of sulfolane, cyclopentanone and gamma-butyrolactone

description: The dataset contains the output of DFT calculations for the compounds studied in the article "Theoretical study on fluorinated derivatives of sulfolane, cyclopentanone, and gamma-butyrolactone". The files are named according to the compound codes in the publication.
[B3LYP]: results of gas-phase optimization and vibrational frequency analysis at B3LYP/6-311+G** level for neutral species (output of Gaussian 16 software).
[M06-2X]: results of gas-phase optimization and vibrational frequency analysis at M062X/6-311+G** level for neutral, oxidized and reduced species (output of Gaussian 16 software).
[BP-TZVP-COSMO_geom]: geometries of neutral and protonated species optimized at BP86/def-TZVP level of theory in ideal conductor (COSMO model), as *.xyz files
[BP-TZVPD-COSMO_cosmo-files]: results of single-point calculations at BP86/def2-TZVPD level with Fine cavity parameter in ideal conductor (COSMO model), for geometries presented in 'BP-TZVP-COSMO_geom' (see above), as *.cosmo files.
DOI: 10.6084/m9.figshare.24632202
title: Supplementary method accompany nupack codes.docx

description: we introduce an advanced conditional platform named intelligent guide RNA (IngRNA) that exhibits the capacity to sense, make decisions, and execute intelligent actions. In this platform, the CRISPR RNA (CrRNA) sequence is sequestered by flanking sequences to prevent its function from targeting genes of interest in the absence of the trigger RNA. The design includes a short linker sequence, with the trigger RNA site located upstream. A substantial portion of these specific sequences are intentionally inhibited by the complementary strand. The upper loop of the platform contains the first toe-hold, which provides the necessary binding force for the trigger RNA. The trigger RNA binding event initiates the opening of the second toe-hold, situated within the complementary strand of the trigger RNA binding site. The liberation of the second toe-hold from its obstructed state facilitates the connection of the 5' side of the platform to it, resulting in the release of CrRNA from its restrained condition, thus enabling it to carry out its intended function. In this biological circuit, the targeting of the luciferase gene is investigated in the presence or absence of cognate trigger RNA in test tubes, bacteria, and mammalian cells.
DOI: 10.6084/m9.figshare.24632202.v1
title: Supplementary method accompany nupack codes.docx

description: we introduce an advanced conditional platform named intelligent guide RNA (IngRNA) that exhibits the capacity to sense, make decisions, and execute intelligent actions. In this platform, the CRISPR RNA (CrRNA) sequence is sequestered by flanking sequences to prevent its function from targeting genes of interest in the absence of the trigger RNA. The design includes a short linker sequence, with the trigger RNA site located upstream. A substantial portion of these specific sequences are intentionally inhibited by the complementary strand. The upper loop of the platform contains the first toe-hold, which provides the necessary binding force for the trigger RNA. The trigger RNA binding event initiates the opening of the second toe-hold, situated within the complementary strand of the trigger RNA binding site. The liberation of the second toe-hold from its obstructed state facilitates the connection of the 5' side of the platform to it, resulting in the release of CrRNA from its restrained condition, thus enabling it to carry out its intended function. In this biological circuit, the targeting of the luciferase gene is investigated in the presence or absence of cognate trigger RNA in test tubes, bacteria, and mammalian cells.
DOI: 10.25345/c5ww7797h
title: MassIVE MSV000093492 - Curso cromatografia y metabolomica universidad de los andes
title: Curso cromatografia y metabolomica universidad de los andes por viviana ortega
DOI: 10.5281/zenodo.10204460
title: Utilizing Creator Profiles for Predicting Valuable User Enhancement Reports

description: This is the dataset for paper "Utilizing Creator Profiles for Predicting Valuable User Enhancement Reports"
DOI: 10.5281/zenodo.10204459
title: Utilizing Creator Profiles for Predicting Valuable User Enhancement Reports

description: This is the dataset for paper "Utilizing Creator Profiles for Predicting Valuable User Enhancement Reports"
DOI: 10.5281/zenodo.8421007
title: Data from Nicolle et al. LC-HRMS study of Streptomyces sp. AgN23 Culture Media Extract. Study of AgN23 exometabolome and analysis of Arabidopsis metabolomic responses to the bacteria

description: This archive compiles several datasets related to studies of Streptomyces sp. AgN23 interaction with Arabidopsis thaliana. Ultra-high-performance liquid chromatography-high-resolution MS (UHPLC-HRMS) analyses were performed on a Q Exactive Plus quadrupole (Orbitrap) mass spectrometer, equipped with a heated electrospray probe (HESI II) coupled to a U-HPLC Ultimate 3000 RSLC system (Thermo Fisher Scientific, Hemel Hempstead, United Kigdom). For each biological sample, the RAW file obtained in ESI+ and ESI- mode were retrieved from the Xcalibur version 4.4 software and are deposited in separate sub-folders termed "RawPos" and "RawNeg". Each experimental cohort is grouped in a folder where the biological repeats can be retrieved, as well as QC (Quality Check, pool of all samples from the cohort), Blank samples and eventual alternative control such as Bennett, the mock control media of Streptomyces sp.  AgN23. The details regarding samples preparation, analytic parameters and mass spectrometry, statistical treatment and visualization of the data will be made available in the publication relating to this archive. The folder " AgN23-WT_AgN23-pSC004" contains chromatograms related to metabolomic study of Wild-type and pSC004-1, pSC004-10, pSC004-16 and pSC004-22 mutants of Streptomyces sp. AgN23. The folder " Col-0_AgN23" contains chromatograms related to metabolomic study of Arabidopsis thaliana Col-0 responses to colonization by Streptomyces sp. AgN23-WT. The folder " Col-0_pad3-1_AgN23" contains chromatograms related to metabolomic study of Arabidopsis thaliana Col-0 and the Arabidopsis pad3-1 mutant responses to colonization by Streptomyces sp. AgN23-WT. The folder " Col-0_pSC004" contains chromatograms related to metabolomic study of Arabidopsis thaliana Col-0 responses to colonization by Streptomyces sp. AgN23-WT and the AgN23 mutants pSC004-10 and pSC004-22. It should be noted that in the publication associated with this archive, the pSC004-1, pSC004-10, pSC004-16 and pSC004-22 mutants are referred to as ΔgbnB-1, ΔgbnB-2, ΔgbnB-3 and ΔgbnB-4, respectively.
DOI: 10.5281/zenodo.8421008
title: Data from Nicolle et al. LC-HRMS study of Streptomyces sp. AgN23 Culture Media Extract. Study of AgN23 exometabolome and analysis of Arabidopsis metabolomic responses to the bacteria

description: This archive compiles several datasets related to studies of Streptomyces sp. AgN23 interaction with Arabidopsis thaliana. Ultra-high-performance liquid chromatography-high-resolution MS (UHPLC-HRMS) analyses were performed on a Q Exactive Plus quadrupole (Orbitrap) mass spectrometer, equipped with a heated electrospray probe (HESI II) coupled to a U-HPLC Ultimate 3000 RSLC system (Thermo Fisher Scientific, Hemel Hempstead, United Kigdom). For each biological sample, the RAW file obtained in ESI+ and ESI- mode were retrieved from the Xcalibur version 4.4 software and are deposited in separate sub-folders termed "RawPos" and "RawNeg". Each experimental cohort is grouped in a folder where the biological repeats can be retrieved, as well as QC (Quality Check, pool of all samples from the cohort), Blank samples and eventual alternative control such as Bennett, the mock control media of Streptomyces sp.  AgN23. The details regarding samples preparation, analytic parameters and mass spectrometry, statistical treatment and visualization of the data will be made available in the publication relating to this archive. The folder " AgN23-WT_AgN23-pSC004" contains chromatograms related to metabolomic study of Wild-type and pSC004-1, pSC004-10, pSC004-16 and pSC004-22 mutants of Streptomyces sp. AgN23. The folder " Col-0_AgN23" contains chromatograms related to metabolomic study of Arabidopsis thaliana Col-0 responses to colonization by Streptomyces sp. AgN23-WT. The folder " Col-0_pad3-1_AgN23" contains chromatograms related to metabolomic study of Arabidopsis thaliana Col-0 and the Arabidopsis pad3-1 mutant responses to colonization by Streptomyces sp. AgN23-WT. The folder " Col-0_pSC004" contains chromatograms related to metabolomic study of Arabidopsis thaliana Col-0 responses to colonization by Streptomyces sp. AgN23-WT and the AgN23 mutants pSC004-10 and pSC004-22. It should be noted that in the publication associated with this archive, the pSC004-1, pSC004-10, pSC004-16 and pSC004-22 mutants are referred to as ΔgbnB-1, ΔgbnB-2, ΔgbnB-3 and ΔgbnB-4, respectively.
DOI: 10.5281/zenodo.10204039
title: Phase sensitivity of spatially broadband high-gain SU(1,1) interferometers

description: Dataset of the publication [D. Scharwald, T. Meier, and P. R. Sharapova, Phase sensitivity of spatially broadband high-gain SU(1,1) interferometers, Phys. Rev. Research 5, 043158 (2023)].
description: We acknowledge financial support of the Deutsche Forschungsgemeinschaft (DFG) via Project SH 1228/3-1 and via the TRR 142/3 (Project No. 231447078, Subproject No. C10). We also thank the PC² (Paderborn Center for Parallel Computing) for providing computation time.
DOI: 10.5281/zenodo.10204040
title: Phase sensitivity of spatially broadband high-gain SU(1,1) interferometers

description: Dataset of the publication [D. Scharwald, T. Meier, and P. R. Sharapova, Phase sensitivity of spatially broadband high-gain SU(1,1) interferometers, Phys. Rev. Research 5, 043158 (2023)].
description: We acknowledge financial support of the Deutsche Forschungsgemeinschaft (DFG) via Project SH 1228/3-1 and via the TRR 142/3 (Project No. 231447078, Subproject No. C10). We also thank the PC² (Paderborn Center for Parallel Computing) for providing computation time.
DOI: 10.17630/76d51023-456c-4ad0-9f9b-262d88ca6f03
title: Room-Temperature Multiple Phosphorescence from Functionalized Corannulenes: Temperature Sensing and Afterglow Organic Light- Emitting Diode (dataset)
DOI: 10.5281/zenodo.10204403
title: Mapping the core of the Tarantula Nebula with VLT-MUSE. III. A template for metal-poor starburst regions in the visual and far-ultraviolet

description: Cumulative optical (VLT/MUSE) and far-ultraviolet (mix of HST empirical and ULLYSES templates) spectrum of NGC2070 (2x2 arcmin^2) presented in Figures 2 and 4, respectively, of Crowther & Castro (MNRAS in press, https://arxiv.org/abs/2311.07642) which should be cited if either dataset is used. 
Contents:
MUSE.dat (ascii format, column 1 wavelength in Angstrom, column 2 flux in erg/s/cm^2/Ang). Further details of MUSE dataset is described in N. Castro et al. (2018 A&A 614 A147)
ULLYSES.dat (ascii format, column 1 wavelength in Angstrom, column 2 flux in erg/s/cm^2/Ang, some detector gaps). Further details of ULLYSES survey is described in R. Roman-Duval et al. (2020, Research Notes of AAS, 4, 205)
DOI: 10.5281/zenodo.10204404
title: Mapping the core of the Tarantula Nebula with VLT-MUSE. III. A template for metal-poor starburst regions in the visual and far-ultraviolet

description: Cumulative optical (VLT/MUSE) and far-ultraviolet (mix of HST empirical and ULLYSES templates) spectrum of NGC2070 (2x2 arcmin^2) presented in Figures 2 and 4, respectively, of Crowther & Castro (MNRAS in press, https://arxiv.org/abs/2311.07642) which should be cited if either dataset is used. 
Contents:
MUSE.dat (ascii format, column 1 wavelength in Angstrom, column 2 flux in erg/s/cm^2/Ang). Further details of MUSE dataset is described in N. Castro et al. (2018 A&A 614 A147)
ULLYSES.dat (ascii format, column 1 wavelength in Angstrom, column 2 flux in erg/s/cm^2/Ang, some detector gaps). Further details of ULLYSES survey is described in R. Roman-Duval et al. (2020, Research Notes of AAS, 4, 205)
DOI: 10.17630/b06557de-c785-4860-bb9e-2d299b2a3eec
title: Tuning the Emission and Exciton Utilization Mechanisms of Pyrazine-Based Multi-Carbazole Emitters and their use in Organic Light-Emitting Diodes (dataset)
DOI: 10.17630/1ddefe3e-34e9-4319-93bf-2de49185d65e
title: Alloying and doping control in the layered metal phosphide thermoelectric CaCuP (dataset)
DOI: 10.5281/zenodo.10204391
title: Tweets containing the keyword 'bucha' during the Russian invasion of Ukraine

description: Comprehensive dataset of Tweets containing the keyword 'bucha' around the Ukraine Invasion in February 2022.
The user handle column has been excluded to protect deleted accounts that have not been retweeted or replied to.
Tweets have been collected via the Academic API using the Search endpoint in four languages:
 
Languages
English
search term: "bucha AND lang='en'"
German
search term: "(bucha OR butscha) AND lang='de'"
Russian
search term: (Бу́ча OR bucha) AND lang:ru
Ukrainian
search term: (Бу́ча OR bucha) AND lang:uk
 
Timeframe
Data starts 1. March 2022 and ends on 27. May 2023.
 
Collection dates
Details on collection dates per Tweet (e.g. to compare with creation dates) as well as the IDs of Tweets for consistency checks can be found here: https://github.com/Leibniz-HBI/ukraine_twitter_data (https://doi.org/10.17605/OSF.IO/RTQXN)
DOI: 10.5281/zenodo.10204392
title: Tweets containing the keyword 'bucha' during the Russian invasion of Ukraine

description: Comprehensive dataset of Tweets containing the keyword 'bucha' around the Ukraine Invasion in February 2022.
The user handle column has been excluded to protect deleted accounts that have not been retweeted or replied to.
Tweets have been collected via the Academic API using the Search endpoint in four languages:
 
Languages
English
search term: "bucha AND lang='en'"
German
search term: "(bucha OR butscha) AND lang='de'"
Russian
search term: (Бу́ча OR bucha) AND lang:ru
Ukrainian
search term: (Бу́ча OR bucha) AND lang:uk
 
Timeframe
Data starts 1. March 2022 and ends on 27. May 2023.
 
Collection dates
Details on collection dates per Tweet (e.g. to compare with creation dates) as well as the IDs of Tweets for consistency checks can be found here: https://github.com/Leibniz-HBI/ukraine_twitter_data (https://doi.org/10.17605/OSF.IO/RTQXN)
DOI: 10.5517/ccdc.csd.cc2fy8wk
title: CCDC 2262469: Experimental Crystal Structure Determination

description: Related Article: Yu-Xin Tan, Ting-Ting Ying, Xiao-Wei Fan, Yan-Le Huang, Ming-Yang Wan, Fang-Xin Wang, Qiao-Lin Li, Meng-Na Wang|2023|New J.Chem.|47|20619|doi:10.1039/D3NJ03461E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gpv56
title: CCDC 2285108: Experimental Crystal Structure Determination

description: Related Article: Hee Chang Kwon, Da Hyun Lee, Minyoung Yoon, Saira Nayab, Hyosun Lee, Ji Hoon Han|2023|Dalton Trans.|52|16802|doi:10.1039/D3DT02615A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gvkjf
title: CCDC 2289645: Experimental Crystal Structure Determination

description: Related Article: Huilin Zhan, Bin Chen, Biao Zhu, Xiang Li, Zhengyu Han, Jianwei Sun, Hai Huang|2023|Chem.Commun.|59|13631|doi:10.1039/D3CC04475K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7045247
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.6084/m9.figshare.22146599.v2
title: Supplementary Files for "Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis"

description: <strong>mollicutes.phylogenomic.iqtree.treefile:</strong> Newick format phylogenomic tree file <strong>faa_aligned_trimmed.zip: </strong>Multiple sequence alignments of single-copy protein-coding genes universally conserved among mollicutes <br> <strong>16S.iqtree.treefile:</strong> Newick format phylogenetic tree based on 16S rRNA sequences <strong>16S.aligned.trimmed.fa: </strong>Multiple sequence alignment of 16S rRNA sequences <strong>methods.html: </strong>Bioinformatic scripts used in this study<br> <br> <br>
DOI: 10.6084/m9.figshare.24632319
title: GSearch_database_GTDB_prob_hll_nt_aa

description: GSearch database for GTDB, seq mode, both probminhash and hll for nt and aa.
DOI: 10.6084/m9.figshare.24632319.v1
title: GSearch_database_GTDB_prob_hll_nt_aa

description: GSearch database for GTDB, seq mode, both probminhash and hll for nt and aa.
DOI: 10.5517/ccdc.csd.cc2gv9vh
title: CCDC 2289407: Experimental Crystal Structure Determination

description: Related Article: Huilin Zhan, Bin Chen, Biao Zhu, Xiang Li, Zhengyu Han, Jianwei Sun, Hai Huang|2023|Chem.Commun.|59|13631|doi:10.1039/D3CC04475K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10204568
title: Direct laser-written optomechanical membranes in fiber Fabry-Perot cavities

description: Data for "Direct laser-written optomechanical membranes in fiber Fabry-Perot cavities".
DOI: 10.5281/zenodo.10204567
title: Direct laser-written optomechanical membranes in fiber Fabry-Perot cavities

description: Data for "Direct laser-written optomechanical membranes in fiber Fabry-Perot cavities".
DOI: 10.5281/zenodo.10203424
title: Example image and Model for virtual histological staining of unlabeled autopsy tissue

description: Example images can be found at "Example_images.zip". Here's what you will find:

Input: Autofluorescence images of unstained autopsy tissue sections; each FOV corresponds to a .mat file, with the 1st channel representing the DAPI channel and the 2nd channel representing the TxRed channel.
Output: Virtually stained H&E images generated by the network model.
Ground Truth: Histochemically stained H&E images for reference/comparison.
10 individual FOVs are provided as example images. Each FOV measures 2048 x 2048 pixels, corresponding to roughly 333 x 333 µm². The 10 FOVs are labeled from "001" to "010".

"001"-"005": These correspond to tissue regions suffering from severe autolysis, rendering staining artifacts in the histochemically stained images (ground truth).
"006"-"010": These correspond to well-preserved tissue regions with high histochemical staining quality.
How to use the model file and the corresponding codes can be found at: https://github.com/liyuzhu1998/Autopsy-Virtual-Staining/tree/main
DOI: 10.5281/zenodo.10203423
title: Example image and Model for virtual histological staining of unlabeled autopsy tissue

description: Example images can be found at "Example_images.zip". Here's what you will find:

Input: Autofluorescence images of unstained autopsy tissue sections; each FOV corresponds to a .mat file, with the 1st channel representing the DAPI channel and the 2nd channel representing the TxRed channel.
Output: Virtually stained H&E images generated by the network model.
Ground Truth: Histochemically stained H&E images for reference/comparison.
10 individual FOVs are provided as example images. Each FOV measures 2048 x 2048 pixels, corresponding to roughly 333 x 333 µm². The 10 FOVs are labeled from "001" to "010".

"001"-"005": These correspond to tissue regions suffering from severe autolysis, rendering staining artifacts in the histochemically stained images (ground truth).
"006"-"010": These correspond to well-preserved tissue regions with high histochemical staining quality.
How to use the model file and the corresponding codes can be found at: https://github.com/liyuzhu1998/Autopsy-Virtual-Staining/tree/main
DOI: 10.6084/m9.figshare.24632370
title: Medical students' knowledge on palliative care - a survey of teaching in Finland (in English)

description: Background: Most studies on palliative medicine (PM) undergraduate education have focused on contents and organizational issues but not outcome. Students’ learning outcomes should be studied to improve teaching in medical schools.Methods: A questionnaire about perceived PM education and attitudes on palliative care (PC) was sent to 543 last year students in all five Finnish medical schools in 2018-2019. 175 (32 %) responses were received from four universities. The students evaluated both the quantity and quality of their PM teaching, implementation of European Association for Palliative Care (EAPC) guidelines and their satisfaction to the training. There were two palliative case scenarios, and the students were asked to find the best treatment option.Results: In the Finnish universities PM education was available mainly integrated with oncology, geriatrics, and general medicine. Two universities also offered a specific PM course. In average, 50-70% of the EAPC curriculum was covered by lectures, small-group teaching, seminars, and bedside teaching with significant differences between faculties. Only 30-60 % of students were satisfied with the education received. The highest rankings were given in the universities with a special PM course.Conclusions: In Finland, the coverage of EAPC curriculum is satisfactory, but the PM education is mainly given integrated with other specialties. The dedicated course on PM was associated with increased perceived knowledge and satisfaction of PM education. However, PM training was not associated with students’ attitudes on PC.
DOI: 10.5281/zenodo.10204731
title: Snow depth, snow water equivalent, ice thickness in Fuglebekken and Revdalen catchments collected in the SnowPilot campaign in Spring 2022

description: File SnowPilot_snowdepth_along_the_GPR_profile_2022 contains snow depth measurements taken along the GPR profile performed during the SIOS SnowPilot campaign in Spring 2022. File SnowPilot_snowdepth_swe_2022 contains depth, snow water equivalent and basal ice thickness. Snowpits were dug on GPR profile crossings in the Fuglebekken and Revdalen catchments in the Hornsund fiord, Spitsbergen catchment. Snow density was measured with an IG PAS snow tube, and snow depth and basal ice (ice forming on the ground surface) thickness were measured with an avalanche probe. Point locations measured. with handheld GPR reciever.
DOI: 10.5281/zenodo.6645005
title: Snow depth, snow water equivalent, ice thickness in Fuglebekken and Revdalen catchments collected in the SnowPilot campaign in Spring 2022

description: File SnowPilot_snowdepth_along_the_GPR_profile_2022 contains snow depth measurements taken along the GPR profile performed during the SIOS SnowPilot campaign in Spring 2022. File SnowPilot_snowdepth_swe_2022 contains depth, snow water equivalent and basal ice thickness. Snowpits were dug on GPR profile crossings in the Fuglebekken and Revdalen catchments in the Hornsund fiord, Spitsbergen catchment. Snow density was measured with an IG PAS snow tube, and snow depth and basal ice (ice forming on the ground surface) thickness were measured with an avalanche probe. Point locations measured. with handheld GPR reciever.