cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7590857.v1
title: BET on Independence

description: We study the problem of nonparametric dependence detection. Many existing methods suffer severe power loss due to non-uniform consistency, which we illustrate with a paradox. To avoid such power loss, we approach the nonparametric test of independence through the new framework of binary expansion statistics (BEStat) and binary expansion testing (BET), which examine dependence through a novel binary expansion filtration approximation of the copula. Through a Hadamard transform, we find that the symmetry statistics in the filtration are complete sufficient statistics for dependence. These statistics are also uncorrelated under the null. By utilizing symmetry statistics, the BET avoids the problem of non-uniform consistency and improves upon a wide class of commonly used methods (a) by achieving the minimax rate in sample size requirement for reliable power and (b) by providing clear interpretations of global relationships upon rejection of independence. The binary expansion approach also connects the symmetry statistics with the current computing system to facilitate efficient bitwise implementation. We illustrate the BET with a study of the distribution of stars in the night sky and with an exploratory data analysis of the TCGA breast cancer data.
DOI: 10.6084/m9.figshare.7590857.v2
title: BET on Independence

description: We study the problem of nonparametric dependence detection. Many existing methods may suffer severe power loss due to nonuniform consistency, which we illustrate with a paradox. To avoid such power loss, we approach the nonparametric test of independence through the new framework of binary expansion statistics (BEStat) and binary expansion testing (BET), which examine dependence through a novel binary expansion filtration approximation of the copula. Through a Hadamard transform, we find that the symmetry statistics in the filtration are complete sufficient statistics for dependence. These statistics are also uncorrelated under the null. By using symmetry statistics, the BET avoids the problem of nonuniform consistency and improves upon a wide class of commonly used methods (a) by achieving the minimax rate in sample size requirement for reliable power and (b) by providing clear interpretations of global relationships upon rejection of independence. The binary expansion approach also connects the symmetry statistics with the current computing system to facilitate efficient bitwise implementation. We illustrate the BET with a study of the distribution of stars in the night sky and with an exploratory data analysis of the TCGA breast cancer data. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7590866
title: Cauchy Combination Test: A Powerful Test With Analytic <i>p</i>-Value Calculation Under Arbitrary Dependency Structures

description: <b><i>Abstract–</i>Combining individual <i>p</i>-values to aggregate multiple small effects has a long-standing interest in statistics, dating back to the classic Fisher’s combination test. In modern large-scale data analysis, correlation and sparsity are common features and efficient computation is a necessary requirement for dealing with massive data. To overcome these challenges, we propose a new test that takes advantage of the Cauchy distribution. Our test statistic has a simple form and is defined as a weighted sum of Cauchy transformation of individual <i>p</i>-values. We prove a nonasymptotic result that the tail of the null distribution of our proposed test statistic can be well approximated by a Cauchy distribution under arbitrary dependency structures. Based on this theoretical result, the <i>p</i>-value calculation of our proposed test is not only accurate, but also as simple as the classic <i>z</i>-test or <i>t</i>-test, making our test well suited for analyzing massive data. We further show that the power of the proposed test is asymptotically optimal in a strong sparsity setting. Extensive simulations demonstrate that the proposed test has both strong power against sparse alternatives and a good accuracy with respect to <i>p</i>-value calculations, especially for very small <i>p</i>-values. The proposed test has also been applied to a genome-wide association study of Crohn’s disease and compared with several existing tests. Supplementary materials for this article are available online.</b>
DOI: 10.6084/m9.figshare.7590872
title: L2RM: Low-Rank Linear Regression Models for High-Dimensional Matrix Responses

description: The aim of this article is to develop a low-rank linear regression model to correlate a high-dimensional response matrix with a high-dimensional vector of covariates when coefficient matrices have low-rank structures. We propose a fast and efficient screening procedure based on the spectral norm of each coefficient matrix to deal with the case when the number of covariates is extremely large. We develop an efficient estimation procedure based on the trace norm regularization, which explicitly imposes the low rank structure of coefficient matrices. When both the dimension of response matrix and that of covariate vector diverge at the exponential order of the sample size, we investigate the sure independence screening property under some mild conditions. We also systematically investigate some theoretical properties of our estimation procedure including estimation consistency, rank consistency, and nonasymptotic error bound under some mild conditions. We further establish a theoretical guarantee for the overall solution of our two-step screening and estimation procedure. We examine the finite-sample performance of our screening and estimation methods using simulations and a large-scale imaging genetic dataset collected by the Philadelphia Neurodevelopmental Cohort study. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.7590872.v2
title: L2RM: Low-Rank Linear Regression Models for High-Dimensional Matrix Responses

description: The aim of this article is to develop a low-rank linear regression model to correlate a high-dimensional response matrix with a high-dimensional vector of covariates when coefficient matrices have low-rank structures. We propose a fast and efficient screening procedure based on the spectral norm of each coefficient matrix to deal with the case when the number of covariates is extremely large. We develop an efficient estimation procedure based on the trace norm regularization, which explicitly imposes the low rank structure of coefficient matrices. When both the dimension of response matrix and that of covariate vector diverge at the exponential order of the sample size, we investigate the sure independence screening property under some mild conditions. We also systematically investigate some theoretical properties of our estimation procedure including estimation consistency, rank consistency, and nonasymptotic error bound under some mild conditions. We further establish a theoretical guarantee for the overall solution of our two-step screening and estimation procedure. We examine the finite-sample performance of our screening and estimation methods using simulations and a large-scale imaging genetic dataset collected by the Philadelphia Neurodevelopmental Cohort study. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22256549
title: Quadricuspid Aortic Valve with Ruptured Sinus of Valsalva Aneurysm: a Case Report

description: Abstract Quadricuspid aortic valve (QAV) and sinus of Valsalva aneurysm (SVA) are rare congenital anomalies. We report an elderly patient with QAV associated with a ruptured SVA to the right atrium. Transthoracic echocardiographic and computed tomographic images are presented. We emphasize the important role of computed tomography angiography in establishing and confirming the diagnosis and facilitating treatment planning. The patient was successfully operated by a minimally invasive approach.
DOI: 10.6084/m9.figshare.7066673
title: GPS-Location

description: Mobility
DOI: 10.6084/m9.figshare.7066685
title: Week-Mobility-Network

description: Movement between locations
DOI: 10.6084/m9.figshare.14406744
title: Fluorescent chiral liquid-crystalline networks with dual-mode temperature response

description: Due to the excellent optical properties and great application prospects in the optical field, both pyrene compounds (PCs) and chiral liquid crystal have attracted extensive attention in theoretical research and practical applications. Fluorescent chiral liquid-crystalline networks (FCLCN) with good liquid-crystalline properties and tunable fluorescence properties as a response to temperature were prepared using Poly(methylhydrogeno)siloxane (PMHS), chiral liquid-crystalline monomer (M<sub>1</sub>), chiral crosslinker (M<sub>2</sub>) and organic fluorescent pyrene compounds (M<sub>3</sub>). The as-prepared FCLCN display reversible chiral Grandjean texture during the heating and cooling process from the intrinsic chiral arrangement of FCLCN. The discrete pyrene chromogenic segments in FCLCN matrix endowed the networks with excellent fluorescence properties when irradiating with ultraviolet light and the fluorescence can be precisely adjusted by temperature, furthermore, the FCLCN presents highly sensitive fluorescence evolution with a high response sensitivity of 3.4% K<sup>−1</sup>. The FCLCN can be manufactured into temperature-driven dynamic fluorescence patterns with a fast and reversible response.
DOI: 10.6084/m9.figshare.23305097.v1
title: Additional file 2 of Threshold conditions for curbing COVID-19 with a dynamic zero-case policy derived from 101 outbreaks in China

description: Additional file 2.
DOI: 10.6084/m9.figshare.23305097
title: Additional file 2 of Threshold conditions for curbing COVID-19 with a dynamic zero-case policy derived from 101 outbreaks in China

description: Additional file 2.
DOI: 10.34740/kaggle/dsv/7625115
title: Mahanagar Yatayat Transport Dataset
DOI: 10.6084/m9.figshare.7576604
title: Additional file 5: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Summary of probe-based CNV association analysis results including probe name, chromosome, position, P-value, and adjusted q values. (XLSX 3735 kb)
DOI: 10.6084/m9.figshare.7576583
title: Additional file 2: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Gene annotation of duplications and deletions for overlapped genes, CDSs and exons. (XLSX 309 kb)
DOI: 10.6084/m9.figshare.7576592
title: Additional file 3: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Gene ontology (GO) enrichment using DAVID for CNVs. (XLSX 233 kb)
DOI: 10.6084/m9.figshare.7576598
title: Additional file 4: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Deletion and duplication regions overlapped with the merged QTL regions for ADG. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7576604.v1
title: Additional file 5: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Summary of probe-based CNV association analysis results including probe name, chromosome, position, P-value, and adjusted q values. (XLSX 3735 kb)
DOI: 10.6084/m9.figshare.7576598.v1
title: Additional file 4: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Deletion and duplication regions overlapped with the merged QTL regions for ADG. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7576613.v1
title: Additional file 6: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Primers information and qPCR validations of seven CNVs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7576577
title: Additional file 1: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Summary of identified CNV and CNVRs using PennCNV in Chinese Simmental beef cattle. (XLSX 3459 kb)
DOI: 10.6084/m9.figshare.7576577.v1
title: Additional file 1: of Probe-based association analysis identifies several deletions associated with average daily gain in beef cattle

description: Summary of identified CNV and CNVRs using PennCNV in Chinese Simmental beef cattle. (XLSX 3459 kb)
DOI: 10.6084/m9.figshare.7576706.v1
title: Additional file 5: of Sirt6 regulates efficiency of mouse somatic reprogramming and maintenance of pluripotency

description: Table S1. Differential expression genes in Sirt6-null iPS-like cells relative to wild-type controls. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7576712
title: Additional file 6: of Sirt6 regulates efficiency of mouse somatic reprogramming and maintenance of pluripotency

description: Table S2. Gene ontology analysis from downregulated gene sets in Sirt6-null iPS-like cells. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.7576706
title: Additional file 5: of Sirt6 regulates efficiency of mouse somatic reprogramming and maintenance of pluripotency

description: Table S1. Differential expression genes in Sirt6-null iPS-like cells relative to wild-type controls. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7576670
title: Additional file 1: of Banana sRNAome and degradome identify microRNAs functioning in differential responses to temperature stress

description: Table S1. Statistics of sRNA sequences from banana. Table S2. Summary of known miRNAs in banana. Table S3. Summary of species-specific miRNAs in banana. Table S4. Summary of differentially expressed miRNAs in respond to temperature stress in banana. Table S5. Target genes of known miRNAs in banana. Table S6. PHAS loci in banana. Table S7. Probes for RNA gel blot and primers for qPCR and RLM-5â -RACE. (XLSX 83 kb)
DOI: 10.6084/m9.figshare.7576715
title: Additional file 7: of Sirt6 regulates efficiency of mouse somatic reprogramming and maintenance of pluripotency

description: Table S3. Differential expression genes in Sirt6-null MEFs relative to wild-type controls. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.7576715.v1
title: Additional file 7: of Sirt6 regulates efficiency of mouse somatic reprogramming and maintenance of pluripotency

description: Table S3. Differential expression genes in Sirt6-null MEFs relative to wild-type controls. (XLSX 97 kb)
DOI: 10.6084/m9.figshare.7576769
title: Additional file 2: of Fusobacterium nucleatum promotes chemoresistance to 5-fluorouracil by upregulation of BIRC3 expression in colorectal cancer

description: Table S2. Information of antibody used in the study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7576769.v2
title: Additional file 2: of Fusobacterium nucleatum promotes chemoresistance to 5-fluorouracil by upregulation of BIRC3 expression in colorectal cancer

description: Table S2. Information of antibody used in the study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7576769.v1
title: Additional file 2: of Fusobacterium nucleatum promotes chemoresistance to 5-fluorouracil by upregulation of BIRC3 expression in colorectal caner

description: Table S2. Information of antibody used in the study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7576760
title: Additional file 1: of Fusobacterium nucleatum promotes chemoresistance to 5-fluorouracil by upregulation of BIRC3 expression in colorectal cancer

description: Table S1. Primer sequences of qPCR and ChIP-qPCR and siRNA sequences used in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7576760.v2
title: Additional file 1: of Fusobacterium nucleatum promotes chemoresistance to 5-fluorouracil by upregulation of BIRC3 expression in colorectal cancer

description: Table S1. Primer sequences of qPCR and ChIP-qPCR and siRNA sequences used in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7576781
title: Additional file 12: of The genome-wide transcriptional consequences of the nullisomic-tetrasomic stocks for homoeologous group 7 in bread wheat

description: Table S3. The significantly differentially expressed genes in the NT stocks for group 7 compared with CS. Chrs, chromosomes. (XLS 24 kb)
DOI: 10.6084/m9.figshare.22795776
title: Formation–exhumation history of the Carboniferous Axi epithermal gold deposit in the Chinese Western Tianshan based on zircon U-Pb and pyrite Re-Os geochronology, and (U-Th) /He zircon–apatite thermochronometry

description: Table S2 LA-ICPMS zircon U-Pb data for andesitic host at the Axi gold deposit
DOI: 10.6084/m9.figshare.22795776.v1
title: Formation–exhumation history of the Carboniferous Axi epithermal gold deposit in the Chinese Western Tianshan based on zircon U-Pb and pyrite Re-Os geochronology, and (U-Th) /He zircon–apatite thermochronometry

description: Table S2 LA-ICPMS zircon U-Pb data for andesitic host at the Axi gold deposit
DOI: 10.6084/m9.figshare.19101665
title: Additional file 8 of FIONA1 is an RNA N6-methyladenosine methyltransferase affecting Arabidopsis photomorphogenesis and flowering

description: Additional file 8: Table S6. Summary of splicing events altered in the fiona1-1.
DOI: 10.6084/m9.figshare.22795785
title: Formation–exhumation history of the Carboniferous Axi epithermal gold deposit in the Chinese Western Tianshan based on zircon U-Pb and pyrite Re-Os geochronology, and (U-Th)/He zircon–apatite thermochronometry

description: Table S2 LA-ICPMS zircon U-Pb data for andesitic host at the Axi gold deposit
DOI: 10.6084/m9.figshare.22795785.v1
title: Formation–exhumation history of the Carboniferous Axi epithermal gold deposit in the Chinese Western Tianshan based on zircon U-Pb and pyrite Re-Os geochronology, and (U-Th)/He zircon–apatite thermochronometry

description: Table S2 LA-ICPMS zircon U-Pb data for andesitic host at the Axi gold deposit
DOI: 10.6084/m9.figshare.17013976.v1
title: Ages and tectonic attributes of Late Palaeozoic stratigraphic units in the Tarbagatay, West Junggar (NW China): revisited

description: As the youngest single age of detrital zircons is used as the maximum depositional age, the ages and tectonic attributes of the Late Palaeozoic stratigraphic units in the Tarbagatay area, West Junggar, NW China, become very confusing. An improved statistical approach indicates that 5, 6 and 7 concordant zircons are required for the maximum depositional age at 95% confidence level when the quantity of total concordant zircon in a sample does not exceed 50, 140 and 432, respectively, but the defined maximum depositional age is valid only when it is compatible with geological facts. Otherwise, it is still uncertain if the age is valid. This approach is applied to resolve a chronological chaos in the Late Palaeozoic stratigraphic units in the Tarbagatay area. As a result, the maximum depositional ages obtained from the detrital zircon samples in literature and this study are at 95% confidence level, most of which are well compatible with the fossils in the units, intrusive relationships of plutons to country rocks and ages of interbedded volcanic rocks. The valid maximum depositional ages and other geological facts definitely show the presence of the Devonian, Early Carboniferous and Early Permian stratigraphic units in the Tarbagatay area. The Late Devonian-Early Carboniferous marine-dominated units occurred in the Zharma-Saur arc and its transition to a back-arc basin to the south during the southward subduction of the Irtysh-Zaisan Ocean, whereas the Permian terrestrial unit was formed in a post-collisional setting after the closure of the Irtysh-Zaisan Ocean in the Late Carboniferous.
DOI: 10.6084/m9.figshare.22795845
title: Formation–exhumation history of the Carboniferous Axi epithermal gold deposit in the Chinese Western Tianshan based on zircon U-Pb and pyrite Re-Os geochronology, and (U-Th)/He zircon–apatite thermochronometry

description: Table S1 Trace element data (ppm) of the dated zircons collected from andesitic rocks, and Table S2 LA-ICPMS zircon U-Pb data for andesitic host at the Axi gold deposit
DOI: 10.6084/m9.figshare.22795845.v1
title: Formation–exhumation history of the Carboniferous Axi epithermal gold deposit in the Chinese Western Tianshan based on zircon U-Pb and pyrite Re-Os geochronology, and (U-Th)/He zircon–apatite thermochronometry

description: Table S1 Trace element data (ppm) of the dated zircons collected from andesitic rocks, and Table S2 LA-ICPMS zircon U-Pb data for andesitic host at the Axi gold deposit
DOI: 10.6084/m9.figshare.21747470
title: Soil, leaf and fruit nutrient data for pear orchards located in the Circum-Bohai Bay and Loess Plateau regions

description: The dataset for the soil, leaf and fruit nutrient concentrations of pears in different orchards are displayed in the database. Soil data included pH, organic matter, total N, alkaline hydrolysable N, available P and available K concentrations of 3 different soil layers, 0–20 cm, 20–40 cm and 40–60 cm (named Soil 0–20 cm, Soil 20–40 cm and Soil 40–60 cm, respectively). Leaf and fruit data (named Leaf and Fruit, respectively) included N, P, K, Ca, Fe, Mn, Cu, Zn and B concentrations. In the dataset, CBB represents Circum-Bohai Bay, LP represents Loess Plateau, BJ represents Beijing, HB represents Hebei, SD represents Shandong, LN represents Liaoning, SX represents Shanxi, SaX represents Shaanxi, and different numbers in the same province indicate orchards at different locations.
DOI: 10.6084/m9.figshare.21747470.v1
title: Soil, leaf and fruit nutrient data for pear orchards located in the Circum-Bohai Bay and Loess Plateau regions

description: The dataset for the soil, leaf and fruit nutrient concentrations of pears in different orchards are displayed in the database. Soil data included pH, organic matter, total N, alkaline hydrolysable N, available P and available K concentrations of 3 different soil layers, 0–20 cm, 20–40 cm and 40–60 cm (named Soil 0–20 cm, Soil 20–40 cm and Soil 40–60 cm, respectively). Leaf and fruit data (named Leaf and Fruit, respectively) included N, P, K, Ca, Fe, Mn, Cu, Zn and B concentrations. In the dataset, CBB represents Circum-Bohai Bay, LP represents Loess Plateau, BJ represents Beijing, HB represents Hebei, SD represents Shandong, LN represents Liaoning, SX represents Shanxi, SaX represents Shaanxi, and different numbers in the same province indicate orchards at different locations.
DOI: 10.6084/m9.figshare.22796105
title: The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming

description: This study demonstrates that an evolutionary conserved, autoregulatory ‘AT-hook’ domain of SWI/SNF regulates gene transcription and enhancer activation by modulating SWI/SNF intrinsic catalytic activity and is critical for cell lineage priming
DOI: 10.6084/m9.figshare.22796105.v1
title: The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming

description: This study demonstrates that an evolutionary conserved, autoregulatory ‘AT-hook’ domain of SWI/SNF regulates gene transcription and enhancer activation by modulating SWI/SNF intrinsic catalytic activity and is critical for cell lineage priming
DOI: 10.6084/m9.figshare.14931834
title: Characterization of Wind-blown Sand with Near-wall Motions and Turbulence: from Grain-scale Distributions to Sediment Transport

description: This dataset includes data used in the original research article, " Characterization of wind-blown sand with near-wall motions and turbulence: from grain-scale distributions to sediment transport" by Ting Jin, Ping Wang, Xiaojing Zheng.
DOI: 10.6084/m9.figshare.7591841
title: MOESM4 of Genome-wide identification of brain miRNAs in response to high-intensity intermittent swimming training in Rattus norvegicus by deep sequencing

description: Additional file 4: Table S4. Significantly differentially expressed miRNAs between HIST and NC.