cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.7tr747
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cinara curvipes",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031674-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksn3zb
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Matricaria discoidea",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 146 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031675-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16346824
title: Gtex

description: plier-pathways.pkl - Pathways Data used in Gtex to train the model
DOI: 10.5281/zenodo.16346825
title: Gtex

description: plier-pathways.pkl - Pathways Data used in Gtex to train the model
DOI: 10.7266/n75d8pt5
title: Dataset for: Hydrophobic particle effects of hydrate crystal growth at the water-oil interface
DOI: 10.15468/dl.5jy585
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Commelina communis",
 "Country is Switzerland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 301 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031676-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.58gdny
title: Occurrence Download

description: A dataset containing 13096 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia dealbata",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13096 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031678-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8qkvm
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Commelina communis",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031677-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxhf3q
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon amethystinus",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 189 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031679-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49awb2
title: Occurrence Download

description: A dataset containing 2735 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron reticulatum"
 ]
}

 The dataset includes 2735 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031680-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29622781
title: Additional file 3 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file3 (XLSX 18 kb)
DOI: 10.6084/m9.figshare.29622781.v1
title: Additional file 3 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file3 (XLSX 18 kb)
DOI: 10.6084/m9.figshare.29622784
title: Additional file 4 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file4 (XLSX 130 kb)
DOI: 10.6084/m9.figshare.29622787
title: Additional file 5 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file5 (XLSX 7 kb)
DOI: 10.6084/m9.figshare.29622784.v1
title: Additional file 4 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file4 (XLSX 130 kb)
DOI: 10.6084/m9.figshare.29622787.v1
title: Additional file 5 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file5 (XLSX 7 kb)
DOI: 10.6084/m9.figshare.29622790
title: Additional file 6 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file6 (XLSX 20 kb)
DOI: 10.6084/m9.figshare.29622790.v1
title: Additional file 6 of Expression of LTR and LINE1 transposable elements defines atypical teratoid/rhabdoid tumor subtypes

description: Additional file6 (XLSX 20 kb)
DOI: 10.15468/dl.gtdceq
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metcalfa pruinosa",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031681-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gywrj2
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metcalfa pruinosa",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031682-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29622816
title: Additional file 1 of An immune responsive tumor microenvironment imprints into PBMCs and predicts outcome in advanced pancreatic cancer: lessons from the PREDICT trial

description: Additional file 1: Supplementary Tables S1–S13 supporting the data presented in the main text
DOI: 10.6084/m9.figshare.29622816.v1
title: Additional file 1 of An immune responsive tumor microenvironment imprints into PBMCs and predicts outcome in advanced pancreatic cancer: lessons from the PREDICT trial

description: Additional file 1: Supplementary Tables S1–S13 supporting the data presented in the main text
DOI: 10.6084/m9.figshare.29622829.v1
title: Additional file 2 of Impact of genetic risk and lifestyles on cardiovascular disease-free and total life expectancy: a cohort study

description: Additional file 2. Input for the multistate lifetable.xlsx: Input 1. Coefficients in the Poisson regression. Input 2. Prevalence of the genetic and/or lifestyle groups. Input 3. Coefficients of the genetic and/or lifestyle groups in the Cox proportion hazard model
DOI: 10.6084/m9.figshare.29622829
title: Additional file 2 of Impact of genetic risk and lifestyles on cardiovascular disease-free and total life expectancy: a cohort study

description: Additional file 2. Input for the multistate lifetable.xlsx: Input 1. Coefficients in the Poisson regression. Input 2. Prevalence of the genetic and/or lifestyle groups. Input 3. Coefficients of the genetic and/or lifestyle groups in the Cox proportion hazard model
DOI: 10.6084/m9.figshare.29622834
title: Additional file 1 of A base editing platform for the correction of cancer driver mutations unmasks conserved p53 transcription programs

description: Additional file 1: Table S1. DEGs overlap in TP53-R273H corrected cell lines within cell lines and with cancer gene census
DOI: 10.6084/m9.figshare.29622834.v1
title: Additional file 1 of A base editing platform for the correction of cancer driver mutations unmasks conserved p53 transcription programs

description: Additional file 1: Table S1. DEGs overlap in TP53-R273H corrected cell lines within cell lines and with cancer gene census
DOI: 10.6084/m9.figshare.29622840
title: Additional file 3 of A base editing platform for the correction of cancer driver mutations unmasks conserved p53 transcription programs

description: Additional file 3: Table S2. DEGs in individual cell lines following correction TP53-R273H and SMAD-Q311* and overlap with Fischer, 2017
DOI: 10.6084/m9.figshare.29622840.v1
title: Additional file 3 of A base editing platform for the correction of cancer driver mutations unmasks conserved p53 transcription programs

description: Additional file 3: Table S2. DEGs in individual cell lines following correction TP53-R273H and SMAD-Q311* and overlap with Fischer, 2017
DOI: 10.6084/m9.figshare.29622843
title: Additional file 4 of A base editing platform for the correction of cancer driver mutations unmasks conserved p53 transcription programs

description: Additional file 4: Table S3. DEGs in TP53-R175H as well as in comparison to TP53-R273H cell lines
DOI: 10.6084/m9.figshare.29622843.v1
title: Additional file 4 of A base editing platform for the correction of cancer driver mutations unmasks conserved p53 transcription programs

description: Additional file 4: Table S3. DEGs in TP53-R175H as well as in comparison to TP53-R273H cell lines
DOI: 10.6084/m9.figshare.29622846.v1
title: Additional file 1 of Weight-loss associated DNA methylation patterns: targetable biomarkers and pathway insights

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29622846
title: Additional file 1 of Weight-loss associated DNA methylation patterns: targetable biomarkers and pathway insights

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.29622852
title: Additional file 3 of Weight-loss associated DNA methylation patterns: targetable biomarkers and pathway insights

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.29622852.v1
title: Additional file 3 of Weight-loss associated DNA methylation patterns: targetable biomarkers and pathway insights

description: Supplementary Material 3
DOI: 10.15468/dl.t9pukh
title: Occurrence Download

description: A dataset containing 87311 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Knautia dipsacifolia"
 ]
}

 The dataset includes 87311 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031610-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29622853
title: Additional file 1 of Genome-environment association analysis reveals climate-driven adaptation of chickens

description: Additional file 1: Table S1. Summary of samples included in this study. Table S2. Summary of climatic variables included in this study. Table S3. Summary of genome sequencing and mapping statistic. Table S4. Details of SNPs' repartition across the autosomal chromosomes. Table S5. Within-population genetic diversity. Table S6. 1464 candidate SNPs associated with climatic variables as identified by the LFMM approach. Table S7. 5552 candidate SNPs associated with climatic variables as identified by the Samβada. Table S8. 12,584 candidate SNPs associated with climatic variables as identified by the RDA. Table S9. 184 genes identified by the LFMM, individual-based spatial analysis, and RDA. Table S10. The overlap of candidante genes with reported QTLs related to the adaptation of chickens. Table S11. 82 genes associated with temperature adaptation identified by the LFMM, individual-based spatial analysis, and RDA. Table S12. 62 genes associated with precipitation adaptation identified by the LFMM, individual-based spatial analysis, and RDA.
DOI: 10.6084/m9.figshare.29622853.v1
title: Additional file 1 of Genome-environment association analysis reveals climate-driven adaptation of chickens

description: Additional file 1: Table S1. Summary of samples included in this study. Table S2. Summary of climatic variables included in this study. Table S3. Summary of genome sequencing and mapping statistic. Table S4. Details of SNPs' repartition across the autosomal chromosomes. Table S5. Within-population genetic diversity. Table S6. 1464 candidate SNPs associated with climatic variables as identified by the LFMM approach. Table S7. 5552 candidate SNPs associated with climatic variables as identified by the Samβada. Table S8. 12,584 candidate SNPs associated with climatic variables as identified by the RDA. Table S9. 184 genes identified by the LFMM, individual-based spatial analysis, and RDA. Table S10. The overlap of candidante genes with reported QTLs related to the adaptation of chickens. Table S11. 82 genes associated with temperature adaptation identified by the LFMM, individual-based spatial analysis, and RDA. Table S12. 62 genes associated with precipitation adaptation identified by the LFMM, individual-based spatial analysis, and RDA.
DOI: 10.15468/dl.253cca
title: Occurrence Download

description: A dataset containing 1208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia dealbata",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1208 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031684-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcext6
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia dealbata",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031683-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.5633083.v2
title: Additional file 2 of VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

description: In silico dataset and accuracy assessment results. The excel table reports the list of all IS (in rows) and the corresponding output returned by the different tools (divided by colors in the following order: VISPA, VISPA2, MAVRIC, SEQMAP, QUICKMAP). For each read (identified by its “ID” in column “header”), we reported the source genomic coordinates (in columns chromosome “chr”, integration point “locus”, and orientation “strand”), the source of annotation as described in VISPA [22] and the nucleotide sequence. Then we reported the output of IS for each tool: the first set of columns report the returned IS genomic coordinates (columns “header”, “chr”, “locus” and “strand”), whereas the other columns label each IS for statistical assessment as true positive (TP), false positive (FP), and false negative (FN) based on the genomic distance (“IS distance”) from the ground truth. Precision and recall are then derived by the columns of TP, FP, and FN. (XLSX 233 kb)
DOI: 10.6084/m9.figshare.c.3938755_d2
title: Additional file 2: of VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

description: In silico dataset and accuracy assessment results. The excel table reports the list of all IS (in rows) and the corresponding output returned by the different tools (divided by colors in the following order: VISPA, VISPA2, MAVRIC, SEQMAP, QUICKMAP). For each read (identified by its “ID” in column “header”), we reported the source genomic coordinates (in columns chromosome “chr”, integration point “locus”, and orientation “strand”), the source of annotation as described in VISPA [22] and the nucleotide sequence. Then we reported the output of IS for each tool: the first set of columns report the returned IS genomic coordinates (columns “header”, “chr”, “locus” and “strand”), whereas the other columns label each IS for statistical assessment as true positive (TP), false positive (FP), and false negative (FN) based on the genomic distance (“IS distance”) from the ground truth. Precision and recall are then derived by the columns of TP, FP, and FN. (XLSX 233 kb)
DOI: 10.6084/m9.figshare.c.3938755_d2.v1
title: Additional file 2: of VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

description: In silico dataset and accuracy assessment results. The excel table reports the list of all IS (in rows) and the corresponding output returned by the different tools (divided by colors in the following order: VISPA, VISPA2, MAVRIC, SEQMAP, QUICKMAP). For each read (identified by its “ID” in column “header”), we reported the source genomic coordinates (in columns chromosome “chr”, integration point “locus”, and orientation “strand”), the source of annotation as described in VISPA [22] and the nucleotide sequence. Then we reported the output of IS for each tool: the first set of columns report the returned IS genomic coordinates (columns “header”, “chr”, “locus” and “strand”), whereas the other columns label each IS for statistical assessment as true positive (TP), false positive (FP), and false negative (FN) based on the genomic distance (“IS distance”) from the ground truth. Precision and recall are then derived by the columns of TP, FP, and FN. (XLSX 233 kb)
DOI: 10.15468/dl.e83b74
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andropogon chrysostachyus",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 66 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031685-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ef649w
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia dealbata",
 "Country is Lesotho",
 "HasCoordinate is true"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031686-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29622945
title: Additional file 2 of Enhanced deep learning approach for detecting and locating tectonic tremors in the Nankai subduction zone

description: Supplementary file 2.
DOI: 10.6084/m9.figshare.29622945.v1
title: Additional file 2 of Enhanced deep learning approach for detecting and locating tectonic tremors in the Nankai subduction zone

description: Supplementary file 2.
DOI: 10.6084/m9.figshare.29622961
title: Additional file 1 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 1: SI-1, SI-2. SI-1 147 Pirk sequences. SI-2 Multiple sequence alignments of the Pirks.
DOI: 10.6084/m9.figshare.29622961.v1
title: Additional file 1 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 1: SI-1, SI-2. SI-1 147 Pirk sequences. SI-2 Multiple sequence alignments of the Pirks.
DOI: 10.6084/m9.figshare.29622964
title: Additional file 2 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 2: SI-3, SI-4, SI-5, SI-6. SI-3 All up- and downregulated differentially expressed genes in Fig. 6A. SI-4 The top 10 ranked up- and downregulated differentially expressed genes in GO terms related to biological process (BP), cellular component (CC), and molecular function (MF) in Fig. 6B. SI-5 and SI-6 The heatmap data of gene expression in Fig. 6D and F.
DOI: 10.6084/m9.figshare.29622964.v1
title: Additional file 2 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 2: SI-3, SI-4, SI-5, SI-6. SI-3 All up- and downregulated differentially expressed genes in Fig. 6A. SI-4 The top 10 ranked up- and downregulated differentially expressed genes in GO terms related to biological process (BP), cellular component (CC), and molecular function (MF) in Fig. 6B. SI-5 and SI-6 The heatmap data of gene expression in Fig. 6D and F.
DOI: 10.6084/m9.figshare.29622967.v1
title: Additional file 3 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 3: Figures S1 and S2. Fig. S1 qRT-PCR analysis of Relish knockdown efficiency and antimicrobial peptide transcript levels in pirk-KO mutants. (A) qRT-PCR was performed to assess Relish knockdown efficiency in pirk-KO mutants fed with dsRNA-expressing E. coli HT115. (B) Transcriptional levels of AMPs were analyzed to evaluate immune pathway modulation. Fig. S2 Relish knockdown rescues developmental abnormalities in pirk-KO house flies. (A) Comparative growth of larval, pupal, and ovarian development. (B–D) The body weight of 3rd-instar larvae, pupae, and adults. (E) Pupation rate comparisons. (F) Adult survival curves (log-rank (Mantel-Cox)). (G) Fecundity quantification across genotypes (two-way ANOVA). Values presented represent the mean ± SEM with a sample size of n = 10 for measurements of body weight and pupation rate, n = 3 for fertility. The data were used Brown-Forsythe and Welch ANOVA test (B and C), Kruskal–Wallis test (D and E). An asterisk indicates a significant difference from the control (*, p &lt; 0.05; **, p &lt; 0.01; ***, p &lt; 0.001).
DOI: 10.6084/m9.figshare.29622970
title: Additional file 4 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 4: Table S1. Table S1 PCR primers used in this study.
DOI: 10.6084/m9.figshare.29622970.v1
title: Additional file 4 of Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica

description: Additional file 4: Table S1. Table S1 PCR primers used in this study.