cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.aks7je
title: Occurrence Download

description: A dataset containing 4126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Telephium imperati L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4126 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079580-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qvws4
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Country is India",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "OccurrenceStatus is Present",
 "TaxonKey is Ratufa indica (Erxleben, 1777)"
 ]
}

 The dataset includes 270 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097127-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fopbou
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Icterus icterus icterus"
 ]
}

 The dataset includes 65 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046424-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vymbs5
title: Occurrence Download

description: A dataset containing 2865 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lynx pardinus (Temminck, 1827)",
 "Year 1960-2024"
 ]
}

 The dataset includes 2865 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079603-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tk8we
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Euphorbia cuphosperma (Engelm.) Boiss."
 ]
}

 The dataset includes 296 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0345475-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w1dkpc
title: Occurrence Download

description: A dataset containing 1046911 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "TaxonKey is Euphorbia"
 ]
}

 The dataset includes 1046911 records from 1295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046430-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630197_d6
title: Additional file 6: Table S3. of Mapping a major QTL responsible for dwarf architecture in Brassica napus using a single-nucleotide polymorphism marker approach

description: Genes on the mapped segments of chromosome C05 of Brassica napus. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3630167_d1
title: MOESM2 of Census-derived migration data as a tool for informing malaria elimination policy

description: Additional file 2. Predicted movement throughout Mesoamerica. This is the output from the fitted model for Mesoamerica. The “uidto” and “uidfr” variables match with the “uid” variable in Additional file 3. The lat/lon fr/to variables represent centroids of the origin and destination administrative units, while POPI/POPJ refer to total population in the administrative unit in 2010. URBANPROPI/J refer to the proportion of the population in urbanized areas per administrative unit. “CONTIJ” refers to whether the units are contiguous, and “DISTIJ” refers to the distance in kilometres between administrative unit centroids. “predprop” is the proportion of people expected to move from i to j, “predpropnum” is this proportion multiplied by POPI, while “adjprednum” is this number adjusted using Abel and Sander [15]. Finally, “adjpredprop” is this adjusted flow converted back to a proportion (calculated by dividing “adjprednum” by population in i), and “infmove” is the adjusted flow multiplied by incidence in i (“incidfr”).
DOI: 10.6084/m9.figshare.c.3630149_d5
title: Additional file 6: of Transcriptomic and physiological analysis of common duckweed Lemna minor responses to NH4
                     + toxicity

description: Differentially expressed genes. (XLSX 818 kb)
DOI: 10.6084/m9.figshare.c.3630137_d1
title: Additional file 1: Table S1. of Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

description: Primers sequence for qPCR validation. Table S2. Quantitative PCR validation. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3630044_d14
title: Additional file 7: Table S3. of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: BLAST analysis of 12 B-located gene fragments. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630110_d5
title: Additional file 3: of The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

description: Sheet 1: Detailed information on the copy number alterations detected in the MCF-7 cell sub-lines. Sheet 2: Detailed information on the copy number alterations detected in the MDA-MB-231 cell sub-lines. Sheet 3: A list of genes in which copy number alterations were detected in the MCF-7 cell sub-lines. A ‘1’ denotes that a CNA is detected in a given stage (sub-line). A ‘0’ indicates that it was not observed. Information on any alterations in expression observed for a gene with a CNA in the final stage (MCF-7RES-65nM) is given in last columns. Sheet 4: Similar to sheet 3, but with data for the MDA-MB-231 sub-lines. Sheet 5: Similar to sheet 3 but here showing only those genes in which a CNA has been detected in a given stage (sub-line) of MCF-7 and where the expression of the gene was altered in the final stage (MCF-7RES-65nM). Sheet 6: Similar to sheet 5, but with data for the MDA-MB-231 sub-lines. Sheet 7: Overview of the approximate regions in which copy numbers were detected in the MCF-7 cell sub-lines. Sheet 8: Similar to sheet 7, but with data for the MDA-MB-231 sub-lines. (XLSX 1399 kb)
DOI: 10.6084/m9.figshare.c.3630110_d4
title: Additional file 2: of The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

description: Sheet 1: A statistic summary of genes from sheet 2. Sheet 2: A list of 396 breast cancer associated genes in which genomic variants were acquired and selected for during docetaxel exposure in the MCF-7 and MDA-MB-321 sub-lines. The variants include Class A and B variants plus CNA events that correlated with expression changes as observed in MDARES-150nM and MCF-7RES-65nM. The genes are mapped and classified according to the eleven hallmarks of cancer. (XLSX 135Â kb)
DOI: 10.6084/m9.figshare.c.3630110_d3
title: Additional file 5: of The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

description: Sheet 1: Contains a list of genes included in the GPEC analysis performed on selected genes in each stage (sub-line). Data shown for both cell lines: MCF-7 and MDA-MB-231. Also, a literature-curated list of genes with known association to taxane resistance is given (Ehlers et al, unpublished observations). Sheet 2: Results for the GPEC analysis performed on selected genes in each stage (sub-line) of the MCF-7 cell line. Sheet 3: Same as sheet 2, but with data for the MDA-MB-231 sub-lines. Sheet 4: A data sheet containing the top 10 genes from the GPEC analysis performed on selected genes in each stage (sub-line). Data shown for MCF-7 and MDA-MB-231 sub-lines. (XLSX 106Â kb)
DOI: 10.6084/m9.figshare.c.3630044_d11
title: Additional file 4: of B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

description: Data Set S1. The list of differentially expressed genes. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3630110_d2
title: Additional file 4: of The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

description: Sheet 1: Results from the GPEC analysis performed across selected genes detected in the MCF-7 sub-lines. Sheet 2: Same as sheet 1, but with data for the MDA-MB-231 sub-lines. (XLSX 73Â kb)
DOI: 10.5281/zenodo.12724075
title: Accessibility Indicators
title: At EU scale (1km grid)

description: This archive makes available accessibility indicators at EU scale from populated 1km EU grid to towns and cities at EU scale (512 million travel time by car calculated between origins and destinations). It follows a reproducible, transparent and updatable framework. It uses only open source and free routing engines (OSRM), based on OpenStreetMap (OSM) network. This routing engine makes possible the creation of travel time indicators for a large set of origins and destinations.

The EU towns and cities layer has been recently made available and named by the European Commission. This layer is based on a common methodology for all Europe. Within GRANULAR activities, we consider the towns and cities layer as a proxy to discuss on little and medium commercial centralities in Europe.

This methodological framework, implemented with open source solutions (data and code) only and documented in a reproducible way in R notebooks, could be easily extended to other origins and destinations, if a relevant layer will be identified in the future.

Based on travel time matrix, it is possible to compute a large set of indicators. This archive (see readme at the root folder) describes the input data used, summarises the data processing and provide information and metadata on output indicators created at 1km grid cells. Finally it shows how this information has been aggregated at upper territorial levels (NUTS), using statistical attributes associated to 1km grid cells (population evolution, DEGURBA categories).

All the output data is also available.
DOI: 10.5281/zenodo.14160729
title: Accessibility Indicators to services at EU scale - 1km grid indicators

description: This archive makes available accessibility indicators at EU scale from populated 1km EU grid to towns and cities at EU scale (512 million travel time by car calculated between origins and destinations). It follows a reproducible, transparent and updatable framework. It uses only open source and free routing engines (OSRM), based on OpenStreetMap (OSM) network. This routing engine makes possible the creation of travel time indicators for a large set of origins and destinations.

The EU towns and cities layer has been recently made available and named by the European Commission. This layer is based on a common methodology for all Europe. Within GRANULAR activities, we consider the towns and cities layer as a proxy to discuss on little and medium commercial centralities in Europe.

This methodological framework, implemented with open source solutions (data and code) only and documented in a reproducible way in R notebooks, could be easily extended to other origins and destinations, if a relevant layer will be identified in the future.

Based on travel time matrix, it is possible to compute a large set of indicators. This archive (see readme at the root folder) describes the input data used, summarises the data processing and provide information and metadata on output indicators created at 1km grid cells.

All the output data is also available.
DOI: 10.15468/dl.5dz75c
title: Occurrence Download

description: A dataset containing 2195 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Mexico)",
 "TaxonKey is Amanita velosa (Peck) Lloyd"
 ]
}

 The dataset includes 2195 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032144-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mhzs8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balaenoptera brydei Olsen, 1913",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032145-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629969_d3
title: MOESM5 of Epigenetic dynamics of monocyte-to-macrophage differentiation

description: Additional file 5: Table S3. Overview over all identified DMRs and their characteristics.
DOI: 10.6084/m9.figshare.c.3629933_d6
title: MOESM2 of The antioxidative defense system is involved in the premature senescence in transgenic tobacco (Nicotiana tabacum NC89)

description: Additional file 2. Differentially expressed and identified unigenes in photosynthesis, nitrogen metabolism, nutrient reservoir activity, antioxidant activity, ubiquitin-mediated proteolysis, cell growth, and death.
DOI: 10.6084/m9.figshare.c.3629942_d3
title: Additional file 2: of Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha

description: Number of 42kD, 22kD and 57kD ORFs included in the pairwise dN/dS analysis. (XLSX 38.5 kb)
DOI: 10.6084/m9.figshare.c.3629933_d3
title: MOESM6 of The antioxidative defense system is involved in the premature senescence in transgenic tobacco (Nicotiana tabacum NC89)

description: Additional file 6. List of primers used for qRT-PCR analysis.
DOI: 10.6084/m9.figshare.c.3629942_d2
title: Additional file 3: of Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha

description: Likelihood comparison of models with dN/dS=1 and dN/dS&lt;1. (XLSX 41.4 kb)
DOI: 10.6084/m9.figshare.c.3629942_d1
title: Additional file 1: of Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha

description: Annotation of TBE sequences in Oxytricha micronuclear genome in gff format. (GFF 2.38 mb)
DOI: 10.6084/m9.figshare.c.3629933_d1
title: MOESM3 of The antioxidative defense system is involved in the premature senescence in transgenic tobacco (Nicotiana tabacum NC89)

description: Additional file 3. Differentially expressed and identified unigenes in secondary metabolism signaling pathways.
DOI: 10.6084/m9.figshare.c.3629909_d6
title: Additional file 3: of 
                     De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

description: Candidate genes involved in circadian rhythm of radish. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.c.3629930_d1
title: Additional file 1: of Enlarged anterior cervical diskectomy and fusion in the treatment of severe localised ossification of the posterior longitudinal ligament

description: Raw Data. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3629780_d8
title: Additional file 2: Table S2. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: Conserved miRNAs in the three libraries of Panax notoginseng. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3629780_d7
title: Additional file 6: Table S5. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: Statistics of target genes pathways of novel miRNAs in Panax notoginseng. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3629780_d5
title: Additional file 7: Table S6. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: The statistically significant differentially expressed known and novel miRNAs in Panax notoginseng. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3629780_d6
title: Additional file 3: Table S3. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: Novel miRNA candidates in Panax notoginseng. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3629780_d4
title: Additional file 1: Table S1. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: Panax notoginseng saponin content from different tissues of different ages. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629780_d3
title: Additional file 9: Table S7. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: Primers used for stem-loop qRT-PCR. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3629780_d2
title: Additional file 5: Table S4. of Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

description: Statistics of target genes of novel miRNAs in Panax notoginseng. (XLSX 21Â kb)
DOI: 10.17632/hx49mkwgpn.1
title: Topology-Preserving Optimization of OpenStreetMap Networks for Active Transportation

description: The data includes the implementation of the proposed algorithm across several cities, along with GIS outputs generated during the process.
DOI: 10.17632/dz6gzvct32.1
title: Navigating trade uncertainty: The role of trade financing and the spillover effects

description: This zip file contains the replication files for the paper Navigating trade uncertainty: The role of trade financing and the spillover effects, published at the Journal of International Economics.
DOI: 10.17632/dz6gzvct32.2
title: Navigating trade uncertainty: The role of trade financing and the spillover effects

description: This zip file contains the replication files for the paper Navigating trade uncertainty: The role of trade financing and the spillover effects, published at the Journal of International Economics.
DOI: 10.17632/6xs3zz6t7y.1
title: Central bank digital currency payment adoption dataset

description: Central bank digital currency payment adoption dataset
DOI: 10.17632/hzfcg7z832.1
title: The Consumer's Reservation Price as an Adaptive Aspiration Level

description: Data and main code (Stata 17) for the paper "The Consumer's Reservation Price as an Adaptive Aspiration Level"
DOI: 10.15468/dl.73djt3
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nibea mitsukurii (Jordan & Snyder, 1900)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032146-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629537_d5
title: Additional file 13: Table S8. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: Genbank and internal numbers (Rhynchosporium) for taxa used in this study. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3629537_d4
title: Additional file 5: Table S3. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: CAZymes. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3629537_d2
title: Additional file 6: Table S4. of Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

description: (A) Cell wall degrading enzymes. (B) CWDE numbers according to their substrates. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3629507_d3
title: MOESM3 of Engineering and systems-level analysis of Saccharomyces cerevisiae for production of 3-hydroxypropionic acid via malonyl-CoA reductase-dependent pathway

description: Additional file 3. 13C Flux analysis of ST687 and non-producing strain ST1.
DOI: 10.6084/m9.figshare.c.3629507_d2
title: MOESM2 of Engineering and systems-level analysis of Saccharomyces cerevisiae for production of 3-hydroxypropionic acid via malonyl-CoA reductase-dependent pathway

description: Additional file 2. Transcriptome analysis of ST687 compared to non-producing strain ST1.
DOI: 10.6084/m9.figshare.c.3629474_d5
title: Additional file 2: of Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

description: Spliced regions identified by RSR for the Dtt sample. This file contains all supplementary results for five test cases for the Dtt sample. (XLSX 2828 kb)
DOI: 10.6084/m9.figshare.c.3629474_d3
title: Additional file 1: of Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

description: Spliced regions identified by RSR for the Tg sample. This file contains all supplementary results for five test cases for the Tg sample. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.c.3629474_d4
title: Additional file 3: of Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

description: Statistics reported by RSR for 100 test cases for the Tg sample. This file contains all supplementary results for 100 test cases for the Tg sample. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3629474_d2
title: Additional file 4: of Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

description: Statistics reported by RSR for 64 test cases for the Dtt sample. This file contains all supplementary results for 64 test cases for the Dtt sample. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.c.3629474_d1
title: Additional file 5: of Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

description: Total number of spliced regions identified by RSR in the human ENCODE RNA-Seq dataset. This file includes all supplementary results for number of supporting reads, splice length, range of supporting reads (spliced regions) identified by RSR in the human ENCODE RNA-Seq dataset. (XLSX 1411 kb)
DOI: 10.15468/dl.kngfgj
title: Occurrence Download

description: A dataset containing 612 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Armillaria sinapina Bérubé & Dessur."
 ]
}

 The dataset includes 612 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032147-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3629240_d1
title: Additional file 1: of Modulation of post-stroke degenerative and regenerative processes and subacute protection by site-targeted inhibition of the alternative pathway of complement

description: List of 248 genes and results of Nanostring mRNA expression analysis comparing wild-type control to CR2-fH-treated mice.