cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14285997.v1
title: DNA Barcoding unveils cryptic lineages of Hoplias malabaricus from Northeastern Brazil

description: Abstract The trahira or wolf fish - Hoplias malabaricus- is a valid species, although recent cytogenetic and molecular studies have indicated the existence of a species complex. In this context, the present study analyzed the mitochondrial COI marker to determine the levels of genetic diversity of specimens from the Brazilian state of Maranhão, and verify the occurrence of distinct lineages within the study area. Samples were collected from the basins of the Turiaçu, Pindaré, Mearim, Itapecuru, and Parnaíba rivers. A 630-bp fragment was obtained from 211 specimens, with 484 conserved and 108 variable sites, and 60 haplotypes (Hd = 0,947; π = 0,033). The phylogenetic analyses indicated the existence of three distinct lineages of H. malabaricus from Maranhão. Genetic distances of 1.5-8.2% were found between all the populations analyzed, while the variation between haplogroups ranged from 2.1% to 7.7%. The AMOVA indicated that most of the molecular variation was found among groups, with high FST values. The high levels of genetic variability found in the present study are supported by the available cytogenetic data. These findings reinforce the need for the development of effective programs of conservation and management independently for each river basin, in order to preserve the genetic variability found in this taxon.
DOI: 10.6084/m9.figshare.14285996.v1
title: Prospect of microbial food borne diseases in Pakistan: a review

description: Abstract Nowadays food borne illness is most common in people due to their epidemic nature. These diseases affect the human digestive system through bacteria, viruses and parasites. The agents of illness are transmitted in our body through various types of food items, water and uncooked. Pathogens show drastic changes in immunosuppressant people. This review gives general insights to harmful microbial life. Pakistan is a developed country and because of its improper food management, a lot of gastrointestinal problems are noted in many patients. Bacteria are most common agents to spread diarrhoea, villi infection, constipation and dysenteric disease in human and induce the rejection of organ transplant. Enhancement of their lifestyle, properly cooked food should be used and to overcome the outbreak of the diseases.
DOI: 10.6084/m9.figshare.14285993.v1
title: Sequence analysis of the internal transcribed spacer 2 (ITS2) region of rDNA for identifying Trichogramma species and evaluating genetic diversity

description: Abstract Species of Trichogramma Westwood, 1833 (Hymenoptera: Trichogrammtidae) are frequently used as biological control agents against Lepidoptera, but practical application of these egg endoparasitoids are complicated because of their complex taxonomy. This study aimed to compare sequences of internal transcribed spacer regions of ribosomal DNA (ITS2-rDNA) of Trichogramma accessions with those deposited in GenBank in order to access the reliability of the ITS2 as a barcode for discriminating species and evaluating the genetic diversity. ITS2-rDNA sequences obtained from seventeen specimens of Trichogramma confirmed previous identifications based on morphological characteristics. Multiple sequence alignment revealed the existence of highly conserved regions in ITS2 sequences while the neighbour-joining dendrogram indicated that the specimens formed three clusters comprising T. manicobai and T. marandobai (group I), T. galloi (group II) and T. pretiosum (group III). The ITS2 marker was shown to be a powerful DNA barcode for discriminating Trichogramma species and could be used to complement the morphological approach.
DOI: 10.6084/m9.figshare.14285992.v1
title: Situational diagnosis of the popular use of medicinal plants in pediatrics

description: Abstract This study aimed to describe the use of medicinal plants for the relief and treatment of pediatrics pathologies performed by parents of children registered in a Basic Health Unit. This is a cross-sectional, observational and analytical study that occurred from March until May 2016, with the participation of 176 individuals, using a semi-structured questionnaire as a research instrument. Descriptive statistics were applied for data analysis, using frequency distribution and chi-square test. Among all 177 indications of medicinal use of plants in childhood, considering the plant part and administration method, 61.6% converged with scientific data, 21.5% differed and 16.9% were new indications without a similar record in the literature. These results support the popular use of medicinal plants and show to need for greater awareness about the rational use of phytotherapy and stimulate scientific research, as they bring new elements about the therapeutic potential of different species.
DOI: 10.6084/m9.figshare.14285991.v1
title: Chemical composition of Zhumeria majdae essential oil and its effects on the expression of morphine withdrawal syndrome and tolerance to the anticonvulsant effect of morphine on pentylenetetrazole-induced seizures in mice

description: Abstract Regarding the proven anticonvulsant effect of Zhumeria majdae essential oil (ZMEO) in previous studies we were prompted to investigate the ZMEO effects on the tolerance to the anticonvulsant effects of morphine and the morphine withdrawal syndrome. Tolerance to the morphine anticonvulsant effect was induced in mice by subcutaneous injection of 2.5 mg/kg of morphine for 4 days. Subsequent doses of ZMEO (20 mg/kg) were used to study the expression and development of morphine tolerance. Clonidine was used as the standard drug to inhibit the morphine withdrawal syndrome symptoms. To study the ZMEO effect on withdrawal syndrome, mice received appropriate morphine values for 4 days and on the fifth day, 60 min before administration of naloxone. The effective dose of ZMEO was determined and the number of jumps, stands and changes in the dry stool weight, as symptoms of withdrawal syndrome were evaluated. The dose of 20 mg/kg of ZMEO decreased the tolerance in development and expression groups significantly. Counting the number of jumping, standing and defecation were assessed 30 min after morphine and 1 h after the vehicle and clonidine. The dose of 40 mg/kg ZMEO decreased all the signs of withdrawal syndrome significantly. ZMEO was analyzed by GC/MS and linalool (53.1%) and camphor (23.8%) were characterized as the main components. The results suggest that ZMEO possesses constituent(s) that have activity against tolerance to the anticonvulsant effects of morphine and the morphine withdrawal symptoms.
DOI: 10.6084/m9.figshare.14285988.v1
title: Characterization of Enterococcus spp. isolated from a fish farming environment in southern Brazil

description: Abstract The aim of present study is to characterize the resistance and virulence profile of enterococci isolated from aquaculture excavated ponds and masonry tanks (6 samples) in southern Brazil. Samples were cultured in selective medium, 10 colonies were randomly selected from each sample, which were identified by MALDI-TOF and tested against 13 antimicrobials. The presence of resistance (tetL, tetM, tetS, ermB and msrC) and virulence (ace, esp, agg, cylA and gelE) genes were determined by PCR. A total of 79 enterococci were identified, and Entecococcus faecalis (44.3%) and E. casseliflavus (36.7%) were the most prevalent species isolated. Sixty-five strains (82.3%) were resistant to at least one of the antimicrobials tested, whereas 27 (34.2%) strains were multiresistant. The overall percentages of antimicrobial resistant isolates were: 58.2% to rifampicin, 40.5% to fluoroquinolones, 36.7% to erythromycin and 30.4% to tetracycline. The tetL and tetM genes were found in 57.7% of the tetracycline-resistant strains; and msrC in 31.01% of erythromycin-resistant strains. The most frequently detected virulence factors were ace and gelE genes. Although limited to a single farm, these data suggest that aquaculture may be a reservoir of resistant and virulent enterococci. This study is the first step towards enhancing our understandingof distribution, resistance and virulence profile in enterococci isolated from fish farming environments in the south Brazil.
DOI: 10.6084/m9.figshare.14285985.v1
title: Using Citronella to Protect Bees (honeybee Apis mellifera L.) from certain Insecticides and Their Nano Formulations

description: Abstract Experiments were performed investigating citronella (Cymbopogon winterianus Jowitt) as a repellent to honeybee Apis mellifera (L.) (Hymenoptera: Apidae) in Egypt, it was conducted in laboratory in the Department of Entomology and Pesticides Science, Faculty of Agriculture, Cairo University, to check long-term survival of honeybee when exposed to different nano insecticides alone or combined with citronella at the same examination box for each. In this study, we used a modeling approach regarding survival data of caged worker bees under chronic exposure to four insecticides (Chloropyrophos, Nano-chloropyrophos Imidacloprid, Nano-Imidacloprid) each of them was supplemented in a box alone and in combination with citronella. Having three replicates and five concentrations (100, 200, 300, 400 and 500 ppm). Laboratory bioassay of these insecticides showed that chloropyrophos and nano chloropyrophos were the most toxic at their high dose (500 ppm) with LT50 of 120.98 and 122.02 followed by 132.14 and 136.5 minutes for Imidacloprid and Nano-Imidacloprid, respectively. No consumption occurred by bees to mixed sugar syrup with insecticides in all treatments when citronella was added. These data highly recommended that adding citronella is very effective when nicotinoid pesticides are used to longevity honeybee life and keep bee safe.
DOI: 10.5281/zenodo.4592614
title: Transmission Electron Microscopy Tilt Series Data of Chondrocyte Primary Cilia in situ

description: Overlooked for decades as an evolutionary vestigial organelle, the primary cilium has recently become the focus of intensive investigations into understanding of the physical structure and processes of eukaryote cell function. The cilium is central to various pathways and modalities for signalling, allowing centrosomal processing and regulation of cellular and organelle function. The enigmatic process of their nanoscale ciliogenesis and sensory function at present remain poorly understood. Dysfunction of their normal function or component proteins correlates with a wide spectrum of diseases, or ciliopathies, which express as developmental disorders and pathologies. This paper describes transmission electron microscope acquisitions of both single and dual axis tilt series images of chick embryo sternal cartilage primary cilia
DOI: 10.5281/zenodo.4592613
title: Transmission Electron Microscopy Tilt Series Data of Chondrocyte Primary Cilia in situ

description: Overlooked for decades as an evolutionary vestigial organelle, the primary cilium has recently become the focus of intensive investigations into understanding of the physical structure and processes of eukaryote cell function. The cilium is central to various pathways and modalities for signalling, allowing centrosomal processing and regulation of cellular and organelle function. The enigmatic process of their nanoscale ciliogenesis and sensory function at present remain poorly understood. Dysfunction of their normal function or component proteins correlates with a wide spectrum of diseases, or ciliopathies, which express as developmental disorders and pathologies. This paper describes transmission electron microscope acquisitions of both single and dual axis tilt series images of chick embryo sternal cartilage primary cilia
DOI: 10.6084/m9.figshare.14285982.v1
title: Seasonal abundance and distribution of dragonflies in upper Siran valley of District Mansehra Pakistan

description: Abstract Present study was conducted to study seasonal abundance and distribution of dragonflies in upper Siran valley district Mansehra Pakistan. To collect data, eleven localities were visited for three consecutive years (2016-2018). Results come up with a sum of 300 specimens identified under three families, eight genera and twenty species. Highest seasonal abundance recorded during summer and spring were 80.67% and 13.33% respectively while minimum 6.00% was recorded during early autumn. Dominant species observed were, Orthetrum chrysis (14.00%), followed by O. gluacum (12.00%), Palpoleura sexmaculata sexmaculata (11.33%) and O. cancellatum cancellatum (8.00%). However the highest population of dragonflies was found in Munda Gucha with a percentage of 11.33 followed by Jabbar (11.00%) and Sachan (9.67%). The lowest populations were recorded in Suham (6.00%), Dadar (7.67%) and Jabori (7.67%). The surveyed valley showed diverse Anisopterous fauna and thus further extensive surveys are recommended that can come up with more important species from the area.
DOI: 10.6084/m9.figshare.14285979.v1
title: Seroprevalence of Chagas disease in Southern Brazilian cardiac patients and their knowledge about the parasitosis and vectors

description: Abstract Chagas disease (CD) is considered a typical low-income population sickness of the developing countries in Latin America. Given the historical relevance of CD in individuals in southern Rio Grande do Sul (RS) State, Brazil, the aim of this study was to identify the knowledge of the CD and its vectors by cardiac patients, and the prevalence of anti-T cruzi antibodies in these individuals in Pelotas, city located in Rio Grande do Sul (RS) state, Brazil. The subjects with cardiac disease were submitted to a semi-structured questionnaire as well as two serological tests in order to detect anti-T. cruzi IgG antibodies. Of the individuals that born in municipalities showing the highest triatomine infestation rates in recent decades, 81.8% were able to recognize the vector insect (p = 0.0042; OR = 5.9), and 83.3% reported either themselves or someone in their families to have CD (p = 0.043, OR = 5.2). Of the 54 patients submitted to serological analysis, only 01 patient (1.9%) was positive for anti-T. cruzi antibodies, a 55 year old man from the rural area of Canguçu county. This study provides support for the evaluation to be extended to other cardiology centers, given the importance of Chagas disease in Brazil.
DOI: 10.6084/m9.figshare.14285978.v1
title: Identification of the taxonomic status of Scinax nebulosus and Scinax constrictus (Scinaxinae, Anura) based on molecular markers

description: Abstract The validation of many anuran species is based on a strictly descriptive, morphological analysis of a small number of specimens with a limited geographic distribution. The Scinax Wagler, 1830 genus is a controversial group with many doubtful taxa and taxonomic uncertainties, due a high number of cryptic species. One example is the pair of species Scinax constrictus and Scinax nebulosus, which share a similar morphology. Scinax constrictus is restricted to the Brazilian Cerrado savanna, while S. nebulosus is widely distributed throughout northern South America. Despite the validation of many anuran species, discriminations based only on morphological traits is quite difficult due to the high conservative morphology of some groups. In this context, the present study uses mitochondrial and nuclear genes to provide a more consistent diagnosis and test the validity of S. constrictus as a distinct species from S. nebulosus, as well as evaluate the position of these taxa within the Scinax genus. The topologies obtained herein uphold the monophyletic status of Scinax based on all molecular markers assessed in this study, in all analytical approaches, with high levels of statistical support.
DOI: 10.6084/m9.figshare.14285975.v1
title: First report the role of benthic macroinvertebrates as preys for native fish in Toltén river (38° S, Araucania region Chile)

description: Abstract The Toltén river is located in the 137 years old Araucania region, Chile (38° S), and is characterized by low alterations through human interference due agriculture and towns in its surrounding basin, the presence of native fishes and salmonids, and by its lake effluent regime originated from Villarrica lake. The aim of the present study was to make a review of ecological role of the benthic inland water macroinvertebrates as preys for native fishes of the River Toltén, in order to understand their importance in the ecosystem of the river. The literature revealed that the main prey for native fishes are Chironomidae larvae, nevertheless there are not specific reports for Tolten river. The exposed results are similar with similar native species for Patagonia, and these native species would have prey for introduced salmonids, or these species would have prey competition with introduced salmonids in according to the literature descriptions for Argentinean and Chilean Patagonia.
DOI: 10.6084/m9.figshare.14285973.v1
title: Bioaccumulation of Pyrethroid in Parasite Wenyonia acuminata (Cestoda: Caryophyllaeidae) and Host fish Synodontis clarias (Linnaeus, 1758) from Lekki Lagoon, Lagos Nigeria

description: Abstract This study was aimed at determining the concentration of pyrethroid in the surface water, sediment, Weyonia acuminata and Synodontis clarias fish in Lekki lagoon, Lagos, Nigeria. In-situ physicochemical analysis of the surface water was conducted using a calibrated handheld multi-parameter probe (Horiba Checker Model U-10). Intestinal samples from infected and uninfected fish were analyzed for pyrethroid concentrations, microbial colonization, proteins (PRO), superoxide dismutase (SOD), catalase (CAT), reduced glutathione (GSH), malonaldehyde (MDA) and glutathione peroxidase (GPx). The histopathology of infected and uninfected intestinal tissues were analyzed using Haematoxylin and Eosin (H&E) stains and examined under a binocular light microscope (Model 230485). A total of 39 out of 98 S. clarias fish were infected with cestode parasite, Wenyonia acuminate, amounting to 39% parasite prevalence. Among the tested pyrethroids, Cyfluthrin and Alpha –cypermethrin had significant sorption of 1.62 and 3.27 respectively from the aqueous phase to the bottom sediment of the lagoon. Pyrethroid concentration was in the order of sediment &gt; parasite&gt; water &gt; intestine&gt; liver. The cholesterol, triglycerides, and LDL (low density lipids) in the parasite were higher than in the host fish (p&lt;0.05). On the other hand, the fish hepatic protein, high density lipids (HDL) and glucose were higher than the levels in the parasites (p&lt;0.05). There was a high prevalence of gut microbes (30 - 40%), which include Salmonella sp, Escherichia coli, Pseudomonas sp and Bacillus sp among individuals infected with gut Cestodes, Wenyonia sp compared with uninfected individual which had higher gut Staphylococcus sp., Klebsiella sp., and Proteus sp. (10- 40%). among the congeners of pyrethroids analyzed, Cyfluthrin &gt; Alpha-Cyermethrin had significant sorption on the sediment, however unlike a benthopelagic fish, no pyrethroid was accumulated in the S. clarias from the sediment. The fish however accumulated Alpha-Cypermethrin from the aqueous phase. The parasite on the other hand accumulated Bathroid significantly from the surface water and bottom sediment which may be linked to the higher stress levels observed in the parasite than the host fish. The parasite in turn inflicted histological alterations on the host intestine, marked by moderate inflammation of mucosa, alteration of the villi microstructure, moderate stunting of the villous structure and moderate fibrosis of villous structure. The study demonstrated the efficiency of histopathological and microbial analysis in biomonitoring studies enteric parasites and early detection of pyrethroid toxicity respectively compared to bioaccumulation analysis.
DOI: 10.6084/m9.figshare.14285970.v1
title: Spatio-temporal sublittoral macrobenthic distribution and dominant species in Guanabara Bay, Rio de Janeiro, Brazil

description: Abstract Soft-bottom macrobenthic invertebrates are sensitive to natural or anthropogenic changes in aquatic ecosystems. The distribution patterns of sublittoral macrobenthic species in Guanabara Bay were studied from 2005 to 2007. Samples were collected at ten stations during six surveys throughout the rainfall regime (dry, early and late rainy). Ten replicates were collected at each station by Gravity corer or skin diving. Van Dorn bottles (bottom water) and by Ekman sediment sampler (granulometry) provided material for abiotic data. Stations were grouped into sectors (Entrance, Intermediary and Inner) based on abiotic data and location. The Redundancy Analysis (RDA) and Parsimonious RDA for all years and each annual cycle showed indicator taxa with high dominance in each sector. PERMANOVA indicated a regular seasonality between the surveys for the first annual cycle (p &lt;0.05), and an atypical pattern for the second (p&gt; 0.05), possibly due the low rainfall observed during this period. The mosaic of soft-bottom substrates infers structural variables, and patterns of temporal distribution were basically influenced by parameters those indicating pollution and the SACW (South Atlantic Central Water) intrusion, as well as ecological attributes among species, such as: predation, competition. The Ervilia concentrica and Cypridinidae could be used as indicators for anthropic and natural impacts in the Guanabara Bay for the Entrance sector, while Cyprideis salebrosa and Cyprideis sp. for the Intermediary sector and Heleobia australis for the Inner sector.
DOI: 10.6084/m9.figshare.14285965.v1
title: Do river basins influence the composition of functional traits of fish assemblages in Neotropical reservoirs?

description: Abstract In aquatic environments, dams are considered one of the main threats to fish species, acting as an environmental filter for certain functional traits. Although there is some predictability in the composition of the functional traits in reservoirs, it is hypothesized that the environmental filters imposed by evolutionary processes, linked to the characteristics of the basins, are determinant for the functional composition of the traits in reservoirs. For this we performed a PCoA using the functional traits composition matrix of the reservoirs. We used PERMANOVA to test the difference in functional composition between basins. We performed the same process for the species composition matrix to compare the patterns. In this study, there were taxonomic and functional differences among reservoirs inserted in different basins. It was observed that the basin is a determining factor for the functional structure of fish assemblage in reservoirs. When compared, functional and taxonomic structures follow the same pattern, although functionally the reservoir tends to be more similar. These results reinforce the idea that reservoirs act as filters for functional traits (e.g., related with reproduction, feeding and habitat use), although there is a great influence of evolutionary processes related to the basin’s characteristics and origin of the ichthyofaunistic province.