cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31219972
title: Supplementary Material for: A case of refractory panuveitis with coexisting spondyloarthritis successfully treated with tofacitinib

description: Background: Non-infectious uveitis is commonly treated with corticosteroids, immunosuppressants, and, recently, TNF inhibitors. However, some patients do not achieve adequate control of uveitis with these drugs. This report presents a case of panuveitis associated with spondyloarthritis (SpA) in which both TNF and interleukin-17 (IL-17) inhibitors failed to control uveitis, but tofacitinib, a Janus kinase (JAK) inhibitor, was effective in treating uveitis.
Case presentation: A 54-year-old woman visited our hospital with a complaint of blurred vision in her left eye. A small retinal exudate in the inferonasal region in the right eye and 2+ vitreous haze in the left eye were seen. Systemic examinations were performed, but no abnormal findings were detected. The patient subsequently had frequent ocular inflammatory recurrences; thus, Behçet’s disease was suspected, although no characteristic extraocular symptoms were noted. In addition to colchicine, adalimumab was administered, but the patient still showed frequent ocular inflammatory attacks. The patient subsequently developed arthritis and was diagnosed with axial SpA. Despite treatment with infliximab (TNF alpha inhibitor) in or secukinumab (IL-17 inhibitor), ocular inflammatory attacks persisted, resulting in decreased visual acuity attributed to complicated cataracts. After cataract surgery, oral tofacitinib, a JAK inhibitor, was initiated. Afterward, ocular attacks did not occur for more than three years, and her visual acuity remained at 1.0 in both eyes.
Conclusions: We examined a case of panuveitis with coexisiting SpA refractory to TNF inhibitor and IL-17 inhibitor, in which JAK inhibitor was successfully effective. JAK inhibitors may be useful for some patients with refractory uveitis.
DOI: 10.6084/m9.figshare.31219972.v1
title: Supplementary Material for: A case of refractory panuveitis with coexisting spondyloarthritis successfully treated with tofacitinib

description: Background: Non-infectious uveitis is commonly treated with corticosteroids, immunosuppressants, and, recently, TNF inhibitors. However, some patients do not achieve adequate control of uveitis with these drugs. This report presents a case of panuveitis associated with spondyloarthritis (SpA) in which both TNF and interleukin-17 (IL-17) inhibitors failed to control uveitis, but tofacitinib, a Janus kinase (JAK) inhibitor, was effective in treating uveitis.
Case presentation: A 54-year-old woman visited our hospital with a complaint of blurred vision in her left eye. A small retinal exudate in the inferonasal region in the right eye and 2+ vitreous haze in the left eye were seen. Systemic examinations were performed, but no abnormal findings were detected. The patient subsequently had frequent ocular inflammatory recurrences; thus, Behçet’s disease was suspected, although no characteristic extraocular symptoms were noted. In addition to colchicine, adalimumab was administered, but the patient still showed frequent ocular inflammatory attacks. The patient subsequently developed arthritis and was diagnosed with axial SpA. Despite treatment with infliximab (TNF alpha inhibitor) in or secukinumab (IL-17 inhibitor), ocular inflammatory attacks persisted, resulting in decreased visual acuity attributed to complicated cataracts. After cataract surgery, oral tofacitinib, a JAK inhibitor, was initiated. Afterward, ocular attacks did not occur for more than three years, and her visual acuity remained at 1.0 in both eyes.
Conclusions: We examined a case of panuveitis with coexisiting SpA refractory to TNF inhibitor and IL-17 inhibitor, in which JAK inhibitor was successfully effective. JAK inhibitors may be useful for some patients with refractory uveitis.
DOI: 10.15468/dl.cftcjw
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Avellanita bustillosii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003123-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kwc82
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Baliospermum calycinum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 281 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003126-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vady88
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Benoistia orientalis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 99 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003128-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8c4n4x
title: Occurrence Download

description: A dataset containing 20369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Japan",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1990-2000"
 ]
}

 The dataset includes 20369 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003129-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg5ey9
title: Occurrence Download

description: A dataset containing 1146 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lexias dirtea"
 ]
}

 The dataset includes 1146 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003131-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2286278785
title: Structural Biology BAG - Portugal

description: The ITQB groups will work on STING-inhibitor and PFOR enzyme structures for drug development (MATIAS), use SAXS to study E. coli’s Translocated Intimin Receptor and enzyme dynamics (CORDEIRO), target metabolic pathways in pathogens (BRITO & ARCHER), study DNA repair, stress resistance, and iron metabolism (C.V. ROMÃO & MOE), analyze bacterial ligninolytic enzymes (BORGES & FRAZÃO) and examine herpesvirus LANA’s chromatin modulation (MCVEY).

The FCT groups will focus on Mo/W enzymes and PHA synthase (M.J. ROMÃO & DE SOUSA MOTA), investigate bacterial cellulosomes and gut microbiome carbohydrate complexes (CARVALHO) and study biofilm inhibitors (SANTOS-SILVA).

Finally, the I3S/IBMC groups will examine anticoagulants and drug efflux pumps (PEREIRA), develop structural studies on amyloid proteins and fungal signaling complexes using hybrid approaches (RIBEIRO), study glycosyltransferases in pathogens (CABANES) and explore virulence factors in Photobacterium damselae (Dos SANTOS).
DOI: 10.15151/esrf-es-2304673402
title: Macromolecular Crystallography in Bordeaux/Lyon/Toulouse : IECB IBGC CBMN / IBCP-MMSB ICBMS / IPBS LMGM

description: The different research teams who are part of this BAG are located in Bordeaux, Lyon and Toulouse. They are mainly working on worldwide health concerns or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises. Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-2286112830
title: EuXFEL-CFEL collaboration BAG for TR-SSX

description: Beamline ID-29 offers unique opportunities for time-resolved structural biology in the microsecond regime and - because of the small focus - for the use of
small crystals for e.g. faster diffusion of ligands. We will combine in this BAG research interests from groups from CFEL and EuXFEL, that span from methods
development for pink beam SSX data processing and sample delivery to usage of the beamline to gain insights in the structure and dynamics of biological targets.
On the methods development side, the Hamburg team pioneered both SSX with experiments at PETRAIII and pink beam SSX (PBSX) at BioCARS (APS).
DOI: 10.15151/esrf-es-2299170409
title: Towards Sustainable Lanthanide Recovery from Industrial Waste

description: This project aims to investigate the in situ interaction of graphene oxide (GO) with hydrated metal cations (Cu, Ce, Nd, Yb, and Pt) in aqueous solutions to develop new approaches for lanthanide (Ln) recycling from industrial waste. Understanding Ln separation is essential for recovering rare earth elements used in electronics, magnets, and catalysts, while comparisons with Pt and Cu will clarify their sorption behaviors, redox properties, and recovery potential using GO. Using non-resonant inelastic X-ray scattering (NIXS) at the Carbon K-edge and valence to core X-ray Emission Spectroscopy (XES), we will examine Cu, Ce, Nd, Yb, and Pt sorption in aqueous dispersions of single-layered GO and multilayered GO membranes (GOMs). The obtained knowledge will enhance our understanding of the sorption mechanism and drive the design of novel carbon-based materials for efficient Ln separation.
DOI: 10.15468/dl.zswntg
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bernardia dichotoma",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 53 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003132-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2298273021
title: CombiMet : Combinatorial metallurgy : high throughput mapping in time and compositional space of the microstructure of advanced alloys

description: The design space of alloys encompasses composition and processing parameters. Exploring the link between these and the microstructure, which control properties, allows feeding materials models and design new alloys. CombiMet will set-up on ID31 a high throughput methodology that will improve drastically the efficiency of this exploration, based on combined space- and time-resolved HEXRD on on materials with composition gradients, giving access to mapping of microstructure evolution kinetics in parameter space. 
This methodology involves the development of sample environments for in-situ thermo-mechanical processing with fast continuous sample translation synchronized with fast data acquisition. AI-aided data reduction will be developed to reduce the large datasets generated. These tools will be used for scientific cases addressing coupled microstructure evolutions including phase transformations, recrystallization and recovery, for improved structural properties and recyclability.
DOI: 10.15468/dl.czk694
title: Occurrence Download

description: A dataset containing 213 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lethe drypetis"
 ]
}

 The dataset includes 213 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003134-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ff8dk3
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bertya brownii",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 54 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003135-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18439221
title: Glottography dataset derived from Goddard 1999 "Native Languages and Language Families of North America"

description: Cite the source of the dataset as:




Goddard, Ives. 1999. Native Languages and Language Families of North America. (Studies in the Anthropology of North American Indians Series.) In  Smithsonian Institution (ed.) Revised and enlarged edition, with additions and corrections edn. University of Nebraska Press. Sheet map, foldedpp.
DOI: 10.15468/dl.nqsc3t
title: Occurrence Download

description: A dataset listing the 36609 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Egypt"
 ]
}

 The dataset's 36609 records were derived from 1442 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003124-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2x05xf1x
title: Thaw depth measurements from the Circumpolar Active Layer Monitoring (CALM) project for site 'Sagwon Hills MAT' (U32 B), Alaska North Slope, United States (Alaska), 1995-2023

description: This site is registered with the Circumpolar Active Layer Monitoring (CALM) program. It is one among a network of sites that represent a coordinated effort to standardize the collection and access to thaw measurements in representative undisturbed permafrost landscapes. This dataset contains long-term spatial thaw depth observations using mechanical probing on dates indicated by file column headers. To ensure relative consistency within the record, end-of-season measurement dates are within the same Julian calendar week during the height of the thaw season (mid-August to mid-September). It is important to note that the date of maximum annual thaw, interpreted as the active layer thickness, can vary from year to year and between sites.
DOI: 10.18739/a2fx74057
title: Seasonal soil active layer measurements from a Circumpolar Active Layer monitoring (CALM) grid, (U7a) Betty Pingo, Alaska, 1999-2023

description: This site is registered with the Circumpolar Active Layer Monitoring (CALM) program. It is one among a network of sites that represent a coordinated effort to standardize the collection and access to thaw measurements in representative undisturbed permafrost landscapes. This dataset contains long-term spatial thaw depth observations using mechanical probing on dates indicated by file column headers. To ensure relative consistency within the record, end-of-season measurement dates are within the same Julian calendar week during the height of the thaw season (mid-August to mid-September). It is important to note that the date of maximum annual thaw, interpreted as the active layer thickness, can vary from year to year and between sites.
DOI: 10.7910/dvn/9rr3vz
title: Replication Data for: Anhang zur Bachelorarbeit "Die Integration eines neuen Pferdes in eine Gruppe: Bedürfnisse aus Sicht des Pferdes und Einblick in die gängige Praxis"

description: This data set contains the appendix to my bachelor thesis on the topic "Die Integration eines neuen Pferdes in eine Gruppe: Bedürfnisse aus Sicht des Pferdes und Einblick in die gängige Praxis"
DOI: 10.5061/dryad.nk98sf7xs
title: Ecosystem management policy implications based on Tonga main tuna species catch data 2002–2018

description: From 2002 to 2018, the Tongan Long Line fishery collected and compiled
 catch data (limited to presence records) for Albacore, Bigeye, Skipjack,
 and Yellowfin. The Tonga Ministry of Fishery and the South Pacific
 Community (SPC) Office in New Caledonia provided this data. To ensure
 adherence to regulations, at least two fisheries offices cross-verified
 the entire fish catch. The data consists of daily fishing positions
 (latitude and longitude) and date (day, month, and year), organized in a
 1^0 spatial grid. Our study utilized catch per unit effort (CPUE), a
 standardized metric indicating fishing efficiency and effort, calculated
 by dividing the weight of the catch in metric tons by the number of hooks
 deployed per fishing record. To align with the temporal scales of the
 predictor variables, we aggregated the CPUE data into monthly and annual
 datasets using Microsoft Excel.
description: The catch (presence records only) data for Albacore, Bigeye,
 Skipjack and Yellowfin were recorded and compiled by the Tongan Long Line
 fishery from 2002 to 2018 and provided by the Tonga Ministry of Fishery
 and the South Pacific Community (SPC) Office in New Caledonia. The entire
 fish catch is checked by a minimum of two fisheries offices to ensure
 compliance.
DOI: 10.5061/dryad.r4xgxd2jw
title: Squid male alternative reproductive tactics are determined by birth date

description: Alternative reproductive tactics (ARTs) are discontinuous phenotypes
 associated with reproduction, observed in males of many species.
 Typically, large males adopt a tactic of competing with rivals for mating,
 while small males adopt a tactic of stealing fertilization opportunities
 from the large males. The “birthdate hypothesis”, proposing that the date
 of birth influences the determination of each male’s reproductive tactic,
 has been tested only in teleost fish to date. Here, the birthdate
 hypothesis was tested in ARTs of Japanese spear squid Heterololigo
 bleekeri (consort/sneaker) by analyzing statolith growth increments. The
 birth date significantly differed between consorts (early-hatch) and
 sneakers (late-hatch). However, no differences were detected in growth
 history up to 100 days from hatching. Most immature males caught during
 the reproductive season were larger than sneakers, and their hatch date
 was similar to that of consorts, suggesting that these immature males had
 already been following a life history pathway as a consort. These results
 indicate that ARTs of H. bleekeri are determined based on their hatch date
 in early life. This study firstly demonstrated the birthdate hypothesis in
 aquatic invertebrates, suggesting that the mechanism by which birth date
 determines the individual phenotype is a phenomenon more common than
 previously believed.
description: # Squid male alternative reproductive tactics are determined by birth date
 Age, hatch date, and growth history were analyzed for consort males,
 sneaker males, immature males, and mature females of the Japanese spear
 squid, *Heterololigo bleekeri* caught throughout the reproductive season.
 Significant differences were seen in hatch dates between consorts and
 sneakers, with no difference in growth history between them. ##
 Description of the data and file structure: The dataset (CSV) contains
 sample ID, Mantle length, Sex, Reproductive status, Catch date, Statolith
 radius, Hatching check radius, Statolith growth increment counts, Age,
 Hatch date, and Statolith increment width at day1–100 of spear squid
 *Heterololigo bleekeri *collected in the coast of Miyagi prefecture,
 Japan. ## Sharing/Access information If you need further information,
 please contact the corresponding author Shota Hosono.
DOI: 10.5061/dryad.q83bk3jnz
title: Abundance and population growth estimates for bare-nosed wombats

description: Wildlife managers often rely on population estimates, but estimates can be
 challenging to obtain for geographically widespread species. Spotlight
 surveys provide abundance data for many species and, when conducted over
 wide spatial scales, have the potential to provide population estimates of
 geographically widespread species. The bare-nosed wombat (Vombatus
 ursinus) has a broad geographic range and is subject to spotlight surveys.
 We used 19 years (2002–2020) of annual spotlight surveys to provide the
 first estimates of population abundance for two of the three extant
 bare-nosed wombat subspecies: V. u. ursinus on Flinders Island; and V. u.
 tasmaniensis on the Tasmanian mainland. Using distance sampling methods,
 we estimated annual rates of change and 2020 population sizes for both
 sub-species. Tasmanian mainland surveys included habitat data, which
 allowed us to also look for evidence of habitat associations for V. u.
 tasmaniensis. The average wombat density estimate was higher on Flinders
 Island (0.42 ha-1, 95% CrI = 0.25 – 0.79) than on the Tasmanian mainland
 (0.11 ha-1, CrI = 0.07 – 0.19) and both wombat subspecies increased over
 the 19-year survey period with an estimated annual growth rate of 2.90%
 (CrI = -1.7 – 7.3) on Flinders Island and 1.20% (CrI = -1.1 – 2.9) on
 mainland Tasmania. Habitat associations for V. u. tasmaniensis
 were weak, possibly owing to survey design; however, we detected regional
 variation in density for this subspecies. We estimated the population size
 of V. u. ursinus to be 71,826 (CrI = 43,913 – 136,761) on Flinders Island,
 which when combined with a previously published estimate of 2,599 (CI =
 2,254 – 2,858) from Maria Island, where the subspecies was introduced,
 provides a total population estimate. We also estimated 840,665 (CrI =
 531,104 – 1,201,547) V. u. tasmaniensis on mainland Tasmania. These
 estimates may be conservative, owing to individual heterogeneity in when
 wombats emerge from burrows. Although these two sub-species are not
 currently threatened, our population estimates provide an important
 reference when assessing their population status in the future, and
 demonstrate how spotlight surveys can be valuable to inform management of
 geographically widespread species.
DOI: 10.6084/m9.figshare.31169685
title: Two novel species, <i>Phytophthora umbellata</i>, sp. nov., and <i>Phytopythium niubeiliangense</i>, sp. nov., from a subtropical Island in Japan and a warm-temperate forest in China

description: The Oomycetes are renowned for harboring several important pathogenic species, such as <i>Phytophthora</i> and <i>Pythium</i>. In this study, we described two species: a non-papillate, homothallic <i>Phytophthora</i> species and a papillate, asexual <i>Phytopythium</i> species. The strains were collected from the subtropical island of Japan and a warm-temperate forest in China, respectively. Neither strain could be fully assigned to any known taxon, so they were characterized through morphological studies and multigene phylogenetic analyses. The phylogenetic relationships were determined using four loci, namely, the internal transcribed spacer region (ITS-rDNA), cytochrome <i>c</i> oxidase gene (<i>cox1</i>), TigA gene fusion protein (<i>tigA</i>), and the ras-related protein (<i>ypt1</i>), for <i>Phytophthora</i> and five loci, namely, ITS-rDNA, 28S ribosomal DNA (28S-rDNA), <i>cox1, cox2</i>, and the beta-tubulin (<i>β-tub</i>) gene, for <i>Phytopythium</i>. Furthermore, the mitochondrial genome of the new <i>Phytophthora</i> species was sequenced and annotated, revealing a unique gene arrangement compared with related <i>Phytophthora</i> species. Based on these distinct morphological features and taxonomic status, we formally describe the two species as new species. Detailed micromorphological descriptions, illustrations, and molecular DNA data are provided to support their taxonomic classification.