cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24473938
title: Mechanical egg activation and rearing of first instar larvae of <i>Sirex noctilio</i> (Hymenoptera: Siricidae)

description: Egg activation is a cellular transition of an arrested mature oocyte into a developing embryo through a coordinated series of events. Previous studies in Hymenoptera have indicated that mechanical pressure can induce egg activation. In this study, we developed the first egg activation protocol for the haplodiploid insect pest, <i>Sirex noctilio</i> (Hymenoptera: Siricidae), from two climatically different regions in South Africa. In addition, activated eggs were exposed to three treatments involving water, pine sawdust, and the fungal symbiont of <i>S. noctilio</i>,<i> Amylostereum areolatum</i> (Russulales: Amylostereaceae), to confirm the hypothesised prerequisite of the symbiotic fungus for egg development. A rearing protocol was developed for emerged first instar larvae using a modified <i>Anoplophora glabripennis </i>(Coleoptera: Cerambycidae) artificial diet. A significant difference between mean survival rates of activated eggs from the two different regions was observed. <i>Amylostereum areolatum </i>was shown to be unnecessary for egg survival in an artificial environment and adversely affected egg eclosion. Maximum larval survival duration on the artificial diet was 92 days. The egg activation and rearing protocol developed in this study enables opportunities for research on the physiology, ecology, symbioses, and genetics of <i>S. noctilio,</i> which can be exploited for new genetic pest management strategies.
DOI: 10.6084/m9.figshare.24473938.v1
title: Mechanical egg activation and rearing of first instar larvae of <i>Sirex noctilio</i> (Hymenoptera: Siricidae)

description: Egg activation is a cellular transition of an arrested mature oocyte into a developing embryo through a coordinated series of events. Previous studies in Hymenoptera have indicated that mechanical pressure can induce egg activation. In this study, we developed the first egg activation protocol for the haplodiploid insect pest, <i>Sirex noctilio</i> (Hymenoptera: Siricidae), from two climatically different regions in South Africa. In addition, activated eggs were exposed to three treatments involving water, pine sawdust, and the fungal symbiont of <i>S. noctilio</i>,<i> Amylostereum areolatum</i> (Russulales: Amylostereaceae), to confirm the hypothesised prerequisite of the symbiotic fungus for egg development. A rearing protocol was developed for emerged first instar larvae using a modified <i>Anoplophora glabripennis </i>(Coleoptera: Cerambycidae) artificial diet. A significant difference between mean survival rates of activated eggs from the two different regions was observed. <i>Amylostereum areolatum </i>was shown to be unnecessary for egg survival in an artificial environment and adversely affected egg eclosion. Maximum larval survival duration on the artificial diet was 92 days. The egg activation and rearing protocol developed in this study enables opportunities for research on the physiology, ecology, symbioses, and genetics of <i>S. noctilio,</i> which can be exploited for new genetic pest management strategies.
DOI: 10.5281/zenodo.10060586
title: The Kconfig Variability Framework as a Feature Model: Sampled Configurations for Manual Evaluation

description: This dataset contains plain text files with sampled solutions used during the manual evaluation of the transformation rules presented in https://doi.org/10.5445/IR/1000162110. To reproduce the manual evaluation process yourself, please copy over the respective Kconfig files in a local copy of the Linux kernel Git repository and run `make menuconfig`. You need to insert an invisible `MODULES` configuration symbol to ensure that tristate configuration symbols are handled correctly by Kconfig. Additionally, you need to remove the default Linux Kconfig file and rename the Kconfig file for which you want to reproduce the evaluation process accordingly (simply remove the number prefix).
Configurations marked with KCONFIG_NONSOLUTION cannot be reconstructed in `menuconfig`, wherein configurations marked with KCONFIG_SOLUTION should be reproducable in the `menuconfig` interface.
We additionally provide the generated feature models for the 9 selected Kconfig files, alongside with the Kconfig files themselves. Kconfig{1,2,3,4,5} can be automatically evaluated with Kfeature, as they contain no tristate confsyms.
The upstream version of Kfeature can be found on Codeberg: https://codeberg.org/6b6279/Kfeature
DOI: 10.5281/zenodo.7787303
title: The Kconfig Variability Framework as a Feature Model: Sampled Configurations for Manual Evaluation

description: This dataset contains plain text files with sampled solutions used during the manual evaluation of the transformation rules presented in https://doi.org/10.5445/IR/1000162110. To reproduce the manual evaluation process yourself, please copy over the respective Kconfig files in a local copy of the Linux kernel Git repository and run `make menuconfig`. You need to insert an invisible `MODULES` configuration symbol to ensure that tristate configuration symbols are handled correctly by Kconfig. Additionally, you need to remove the default Linux Kconfig file and rename the Kconfig file for which you want to reproduce the evaluation process accordingly (simply remove the number prefix).
Configurations marked with KCONFIG_NONSOLUTION cannot be reconstructed in `menuconfig`, wherein configurations marked with KCONFIG_SOLUTION should be reproducable in the `menuconfig` interface.
We additionally provide the generated feature models for the 9 selected Kconfig files, alongside with the Kconfig files themselves. Kconfig{1,2,3,4,5} can be automatically evaluated with Kfeature, as they contain no tristate confsyms.
The upstream version of Kfeature can be found on Codeberg: https://codeberg.org/6b6279/Kfeature
DOI: 10.5281/zenodo.8088866
title: Handwritten ASAP Short Answer Scoring

description: This dataset is based on the Short Answer Scoring (SAS) dataset of the Automated Student Assessment Prize (ASAP). Although the original dataset was conducted on handwritten content, the scans are not available.To analyze the full pipeline from Handwritten Answers to Automated Scoring, we let students rewrite some answers.The texts used from SAS are from the test set and from the training set.
DOI: 10.5281/zenodo.8088865
title: Handwritten ASAP Short Answer Scoring

description: This dataset is based on the Short Answer Scoring (SAS) dataset of the Automated Student Assessment Prize (ASAP). Although the original dataset was conducted on handwritten content, the scans are not available.To analyze the full pipeline from Handwritten Answers to Automated Scoring, we let students rewrite some answers.The texts used from SAS are from the test set and from the training set.
DOI: 10.18712/nsd-nsd3127-v3
title: The Norwegian Citizen Panel, wave 26

description: The Norwegian Citizen Panel is a platform for internet surveys of public opinion in important areas of society and politics in Norway. Participants are randomly recruited from the Norwegian population register, and they are encouraged to participate over time. The panel was fielded for the first time in the fall of 2013, and as of 2017 the survey is carried out three times a year. The University of Bergen owns and is responsible for the Citizen panel. The company ideas2evidence recruits respondents, produces the survey, and provides documentation of the data. Data is stored and shared by Sikt - Norwegian Agency for Shared Services in Education and Research . The Norwegian Citizen Panel welcomes research proposals for survey content. More information about calls and other updates are available at uib.no/en/citizen

Some of the questions in wave 26 are part of a system of coordinated surveys (“KODEM Light”), which also collects information about beliefs and convictions of elected representatives (uib.no/representant), and government employees (uib.no/NFP). This mode of data collection enables innovate research of groups that comprise parts of the political body in Norway.

The full text for the answer options can be found in the codebook, which is located further down the page.
DOI: 10.6084/m9.figshare.21063616.v1
title: Voronoi analysis - Cultured Reln haplodeficient heterozygous mouse cerebellar slices

description: This set of data shows the steps of image elaboration for Voronoi analysis of cerebellar slices from postnatal day 5-7 Reln haplodeficient heterozygous hybrid mice (L7-GFP<em>reln</em><sup><em>+</em></sup><em>/-</em>F1/) cultured for 21 days in vitro.
DOI: 10.6084/m9.figshare.22591672
title: Supplementary Material for: A Small-for-Gestational-Age Infant with MIRAGE Syndrome Who Developed Heat Stroke and Rhabdomyolysis due to Severe Temperature Instability

description: MIRAGE syndrome is characterized by myelodysplasia, infection, restriction of growth, adrenal hypoplasia, genital phenotypes, and enteropathy. This report describes heat stroke and rhabdomyolysis caused by anhidrosis as a symptom of MIRAGE syndrome in a small-for-gestational-age (SGA) female neonate born at 32 weeks of gestation (birth weight, 911 g [−3.8 SD]). She developed severe temperature instability with anhidrosis, growth failure, mild developmental delay, hypothyroidism, and intractable enteropathy. On day 156, her temperature reached 42.0°C; her fever persisted for 2 h with prolonged irritability. Her serum creatine kinase level increased to a peak value of 12,716 (normal range, 43–321) IU/L. The clinical feature was diagnosed as rhabdomyolysis caused by heat stroke, which resulted from physical exertion with anhidrosis. Her <i>SAMD9</i> variant was c.2945G&gt;A, p. (Arg982His). Neonatologists should be aware of MIRAGE syndrome as a differential diagnosis of SGA with temperature instability.
DOI: 10.12770/3ea321a1-d9d4-49e5-a592-605b80dec240
title: NOMAD: the oceaN frOnt dataset for the Mediterranean seA and southwest inDian ocean

description: Fronts are ubiquitous discrete features of the global ocean often associated with enhanced vertical velocities, in turn boosting primary production and so forth. Fronts thus form dynamical and ephemeral ecosystems where numerous species meet across all trophic levels. Fronts are also targeted by fisheries. Capturing ocean fronts and studying their long-term variability in relation with climate change is thus key for marine resource management and spatial planning. The Mediterranean Sea and the Southwest Indian Ocean are natural laboratories to study front-marine life interactions due to their energetic flow at sub-to-mesoscales, high biodiversity (including endemic and endangered species) and numerous conservation initiatives. Based on remotely-sensed Sea Surface Temperature and Height, we compute thermal fronts (2003-2020) and attracting Lagrangian Coherent Structures (1994-2020), in both regions over several decades. We advocate for the combined use of both thermal fronts and attracting Lagrangian Coherent Structures to study front-marine life interactions. The resulting front database differs from other alternatives by its high spatio-temporal resolution, long time coverage, and relevant thresholds defined for ecological provinces.
DOI: 10.13019/c5yn-eg10
title: Data: US Climate Policy can Contribute to Improved Water Quality and Reduce Hypoxia in the Gulf of Mexico

description: Crop distribution, fertilizer application, and environmental fluxes of nitrate following a suite of scenarios that use multiple models to analyze the effects of climate mitigation policies and wetland restoration on US agriculture.
DOI: 10.17632/m4v5hrnv2z.1
title: Influence of clay-rich sediments on methane hydrate formation: impacts on kinetic behaviour and gas storage capacity - Database

description: This database contains data relating to work carried out on "Influence of clay-rich sediments on methane hydrate formation: impacts on kinetic behaviour and gas storage capacity." It includes three main files: 
(1) the characterization (mineralogy and grain size distribution) and natural clay sediments associated with gas hydrates from the Romanian sector of the Black Sea; synthetic sediments that are sand, illite (ILL) and montmorillonite (MMT) rich clays used for methane hydrate formation in the laboratory .
(2) Pressure and temperature data acquired during high pressure experiments  of methane hydrates formation in the above-mentioned sedimentary matrices, which allowed the study of hydrate formation kinetics.
(3) Data from Raman spectroscopy analyses performed on both synthetic and natural hydrates collected from the Black Sea. The data were obtained from the processing of the spectral signatures of methane in large (LC) and small cages (SC) of hydrate. For each sample analyzed, The dataset include the (1) the integrated intensities of the Raman spectral bands of methane hydrate (ALC and ASC), the relative cage occupancy of large to small cages (θLC/θSC), the derived absolute cage occupancies in large (θLC) and small cages (θLC) , the hydration number as well as the hydrate storage capacity.
DOI: 10.26033/bb68-pw96
title: Binary Minor Planets Compilation Bundle V3.0

description: The data set lists orbital and physical properties for well-observed or suspected binary/multiple minor planets including the Pluto system, compiled from the published literature as inspired by Richardson and Walsh (2006) and similar reviews (Merline et al., 2003; Noll, 2006; Pravec et al., 2006; Pravec and Harris, 2007; Descamps and Marchis, 2008; Noll et al., 2008; Walsh, 2009). In total 370 companions in 351 systems are included. Data are presented in three tables: one for orbital and physical properties; one for companion designations, discovery information, and reference codes for data values; and one giving full references for each reference code. This data set is complete for binary/multiple components reported through 31 March 2019.
DOI: 10.5281/zenodo.7464796
title: Daily lake area delineated from MODIS using GEEDiT for the year 2019

description: Daily lake area delineated from MODIS using GEEDiT for the year 2019
DOI: 10.5281/zenodo.7859076
title: Fox_G3_CuIsotopesSI

description: Two Supporting Information Files are provided as a supplement to the Methods section of the attached manuscript. Both files are.xlsx data files. Supporting Information File 1 (Data Set S1) is an extended method for the column chromatography process undertaken for copper separation prior to isotopic analysis. Support Information File 2 (Data Set S2) provide long-term values for the in-house copper ore mineral standards used within and developed as part of this study.
DOI: 10.6084/m9.figshare.21063280.v1
title: Voronoi analysis - Reln deficient homozygous mouse cerebellar slices co-cultured with Reln haplodeficient heterozygous mouse cerebellar slices

description: This set of data shows the steps of image elaboration for Voronoi analysis of cerebellar slices from postnatal day 5-7 Reln deficient homozygous hybrid mice (L7-GFP<em>reln</em><sup><em>-/-</em></sup>F1/) co-cultured for 21 days in vitro in the presence of slices from Reln haplodeficient homozygous hybrid mice (L7-GFP<em>reln</em><sup><em>+</em></sup><sup><em>/-</em></sup>F1/).
DOI: 10.6084/m9.figshare.21063517.v1
title: Voronoi analysis - Cultured Reln deficient homozygous mouse cerebellar slices

description: This set of data shows the steps of image elaboration for Voronoi analysis of cerebellar slices from postnatal day 5-7 Reln deficient homozygous hybrid mice (L7-GFP<em>reln-/-</em>F1/) cultured for 21 days in vitro.
DOI: 10.6084/m9.figshare.21252324
title: Supplementary Material for: Homozygous Missense Variant in the N-Terminal Region of ANK3 Gene Is Associated with Developmental Delay, Seizures, Speech Abnormality, and Aggressive Behavior

description: <b><i>Introduction:</i></b> Intellectual disability (ID) is a lifelong disability that affects an individual’s learning capacity and adaptive behavior. Such individuals depend on their families for day-to-day survival and pose a significant challenge to the healthcare system, especially in developing countries. ID is a heterogeneous condition, and genetic studies are essential to unravel the underlying cellular pathway for brain development and functioning. <b><i>Methods:</i></b> Here we studied a female index patient, born to a consanguineous Pakistani couple, showing clinical symptoms of ID, ataxia, hypotonia, developmental delay, seizures, speech abnormality, and aggressive behavior. Whole exome sequencing (WES) coupled with Sanger sequencing was performed for molecular diagnosis. Further, 3D protein modeling was performed to see the effect of variant on protein structure. <b><i>Results:</i></b> WES identified a novel homozygous missense variant (c.178T&gt;C; p.Tyr60His) in the <i>ANK3</i> gene. In silico analysis and 3-dimensional (3D) protein modeling supports the deleterious impact of this variant on the encoding protein, which compromises the protein’s overall structure and function. <b><i>Conclusion:</i></b> Our finding supports the clinical and genetic diversity of the <i>ANK3</i> gene as a plausible candidate gene for ID syndrome. Intelligence is a complex polygenic human trait, and understanding molecular and biological pathways involved in learning and memory can solve the complex puzzle of how cognition develops. Intellectual disability (ID) is defined as a deficit in an individual’s learning and adaptive behavior at an early age of onset [American Psychiatric Association, 2013]. It is one of the major medical, and cognitive disorders with a prevalence of 1–3% in the population worldwide [Leonard and Wen, 2002]. ID often exists with other disabling mental conditions such as autism, attention deficit hyperactivity disorder, epilepsy, schizophrenia, bipolar disorder, or depression. Almost half of the cases appear to have a genetic explanation that ranges from cytogenetically visible abnormalities to monogenic defects [Flint, 2001; Ropers, 2010; Tucker-Drob et al., 2013]. Intellectual disability is a genetically heterogeneous condition, and more than 700 genes have been identified to cause ID alone or as a part of the syndrome. Research in X-linked ID has identified more than 100 disease-causing genes on the X chromosome that play a role in cognition; however, research into autosomal causes of ID is still ongoing [Vissers et al., 2016].
DOI: 10.6084/m9.figshare.21828501
title: Supplementary Material for: High-Frequency versus Low-Frequency Spinal Cord Stimulation in Treatment of Chronic Limb-Threatening Ischemia: Short-Term Results of a Randomized Trial

description: <b><i>Introduction:</i></b> The objective of the study is to determine if high-frequency (1 kHz) spinal cord stimulation (SCS) is better than low-frequency SCS for pain relief in chronic limb-threatening ischemia (CLTI). <b><i>Methods:</i></b> HEAL-SCS trial was designed as an open-label, parallel-group, single-center randomized study with a 1:1 allocation ratio. The trial was conducted in Meshalkin National Medical Research Center between August 2018 and February 2020. Total 56 patients underwent screening, 50 were enrolled, 6 were rejected. The participants were randomized into 2 cohorts of 25 patients each by an external coordinator using an online tool. A neurosurgeon and a vascular surgeon both examined all patients and estimated the pain intensity using visual analog scale (VAS), quality of life with short-form-36 health survey (SF-36), and functional status by walking impairment questionnaire (WIQ) at 3 and 12 months. Tissue perfusion was evaluated for 34 patients using transcutaneous oxygen tension measurement (TcPO<sub>2</sub>) at baseline and in 12 months. <b><i>Results:</i></b> All 50 patients (84% men, median age 66.5 y.o) were available for primary outcome assessment 3 and 12 months after implantation. Intention-to-treat analysis demonstrated comparative advantage of HF-SCS over LF-SCS at 3 months with mean VAS score 2.8 (95% CI, 2.4; 3.2) and 3.3 (95% CI, 3.0; 3.6), respectively (<i>p</i> = 0.031). Clinical superiority of HF-SCS persisted at 12-month follow-up (<i>p</i> &lt; 0.001). HF-SCS produced significantly greater pain relief by WIQ at 3 (<i>p</i> &lt; 0.001) and 12 months (<i>p</i> = 0.009). Despite stair-climbing ability was better in HF-SCS group (<i>p</i> = 0.02), no significant difference between groups was found at 1-year post-op in terms of speed (<i>p</i> = 0.92) and distance scores (<i>p</i> = 0.68). Accordingly, the general and mental health domains of SF-36 were significantly better in HF-SCS at 12 months. Despite a tendency toward better resting oxygen pressure in HF-SCS group, there was no intergroup difference by TcPO<sub>2</sub> (<i>p</i> = 0.076). Only 1 patient (2%) required above-the-knee amputation at 10 months after LF-SCS implantation. <b><i>Conclusion:</i></b> High-frequency SCS provides better pain relief, life quality, and functional performance in patients with CLTI during short-term follow-up. The lack of perfusion difference between high-frequency and conventional SCS requires further examination to the possible long-term advantages of the method.
DOI: 10.15482/usda.adc/1529770
title: Data for: Exotic herbivores and fire energy drive standing herbaceous biomass but do not alter compositional patterns in a semiarid savanna ecosystem

description: The data comprise 2 years of biomass and plant community data from a study on fire and herbivore impacts on vegetation in semi-arid Texas savanna. Data are from 72 10m x 10m plots. We randomly assigned one of three fire treatments (no fire, low-energy fire, and high-energy fire), to each whole plot, resulting in 24 replicates. We then divided each of the seventy-two whole plots into four quadrants and established a subplot in the middle of each quadrant. We randomly assigned one of two herbivory treatments to two subplots within each whole plot, with an herbivore exclusion cage (hereafter exclosure) randomly assigned to two subplots; the remaining two subplots served as controls (herbivore-accessible with no exclosure; hereafter herbivore-accessible). We constructed exclosures from 0.13 x 0.76m 19-gauge steel hardware cloth encircled into a 0.5m diameter cage. We secured them with wires to ensure there were no gaps and securely anchored them to be flush with the soil surface. Similar hardware cloth roofs were constructed and affixed on the top of the exclosures to ensure exclusion of vertebrate herbivores. The herbivore-accessible controls were equivalent diameter subplots without an exclosure.
During the growing season one year after treatment implementation (April 2019) we selected one exclosure and one herbivore-accessible subplot for above-ground biomass harvesting. We removed exclosures and hand-clipped all vegetation in the plot to soil level, separated it by functional group, placed it in paper bags, and dried it at 60 degrees C for 24hrs prior to weighing. We clipped herbivore-accessible subplots in the same manner using a 0.5m diameter circular wire-frame to mimic the caged area in adjacent subplots. This process was repeated in August 2020 on the two remaining unharvested subplots. Before clipping, for each subplot, we visually assessed the percent cover of each species present following the Daubenmire classification system.
Resources in this dataset:

Resource Title: Fire Herbivory Subplot Data
File Name: TexasFireEnergyPlotsDataset.xlsx
Resource Description: All data from the project and a tab for metadata
DOI: 10.48786/edbt.2023.14
title: GAM Forest Explanation
DOI: 10.5281/zenodo.6346864
title: Periodic Hydraulic Testing Dataset for "Borehole-based fracture unclogging experiment: bridging the gap between laboratory- and field-scale evidence (FRANC)"

description: This dataset is associated with the SNSF-SPARK project “Borehole-based fracture unclogging experiment: bridging the gap between laboratory- and field-scale evidence (FRANC)”. Please read the ReadMe file for more information.