DOI: 10.6084/m9.figshare.22566583.v1
title: Meta-Analysis of Public RNA Sequencing Data of Multiple Abiotic Stresses in Arabidopsis thaliana Provides New Insights into both ABA-Dependent and ABA-Independent Stress Responsive Genes

description: <strong>File 1 - Metadata for Curated Datasets</strong> This file contains the metadata for the curated datasets used in the meta-analysis, including Sequence Read Archive (SRA) study ID, run ID, sample tissue, treatment type, treatment time, and sequence library type. <br> <strong>File2 - TPM Data for Gene Expression under Stress Conditions</strong> This file contains the transcripts per million (TPM) data, five different treatment types (ABA, Salt, Dehydration, Mannitol, and Cold). <br> <strong>File3 - TN-Ratio Data for Gene Expression under Stress Conditions</strong> This file contains the TN-ratio data, which represents the ratio of gene expression between stress-treated (T) and non-treated (N) samples. <br> <strong>File4 - TN-Score Data for Gene Expression under Stress Conditions</strong> This file contains the TN-score data, calculated by subtracting the number of downregulated experiments from the number of upregulated experiments. The TN-score was used to assess changes in gene expression under stress conditions across experiments. <br> <strong>File 5a - Lists of Upregulated Genes for Each of the Five Stress Treatment Types</strong> This file contains the lists of upregulated genes identified in the Meta-analysis for each of the five stress treatment types. <br> <strong>File 5b - Lists of Downregulated Genes for Each of the Five Stress Treatment Types</strong> This file contains the lists of downregulated genes identified in the Meta-analysis for each of the five stress treatment types. <br> <strong>File 6a - Overlap of Commonly Regulated Genes across ABA, Salt, and Dehydration Treatments</strong> This file contains the lists of commonly regulated genes across three stress treatments: ABA, Salt, and Dehydration. <strong>File 6b - The Results of Enrichment Analysis for Commonly Regulated Genes across ABA, Salt, and Dehydration Treatments</strong> This file contains the results of the enrichment analysis focusing on 166 upregulated and 66 downregulated genes that are commonly regulated across three different stress treatments: ABA, Salt, and Dehydration. <br> <strong>File 7a - Overlap of Commonly Upregulated Genes across ABA, Salt, Dehydration, Mannitol, and Cold Treatments</strong> This file contains the lists of commonly upregulated genes across five stress treatments: ABA, Salt, Dehydration, Mannitol, and Cold. <br> <strong>File 7b - Overlap of Commonly Downregulated Genes across ABA, Salt, Dehydration, Mannitol, and Cold Treatments</strong> This file contains the lists of commonly downregulated genes across five stress treatments: ABA, Salt, Dehydration, Mannitol, and Cold. <br> <strong>File 8a - Overlap of Commonly Upregulated Genes across ABA, Salt, Dehydration, Mannitol, Cold, and Hypoxia Treatments</strong> This file contains the lists of commonly upregulated genes across six stress treatments: ABA, Salt, Dehydration, Mannitol, Cold, and Hypoxia. <br> <strong>File 8b - Overlap of Commonly Downregulated Genes across ABA, Salt, Dehydration, Mannitol, Cold, and Hypoxia Treatments</strong> This file contains the lists of commonly downregulated genes across six stress treatments: ABA, Salt, Dehydration, Mannitol, Cold, and Hypoxia.