cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xznym0
title: Occurrence Download

description: A dataset containing 99116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Month is April",
 "Month is March"
 ]
 },
 "MediaType is Audio"
 ]
}

 The dataset includes 99116 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001450-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jqt9sk
title: Occurrence Download

description: A dataset containing 1069 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siganus luridus (Rüppell, 1829)"
 ]
}

 The dataset includes 1069 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035354-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.byv3vl
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protozoa",
 "DecimalLatitude is greater than 66.3805461978969",
 "DecimalLatitude is less than 68.7080162487706",
 "DecimalLongitude is greater than -156.589678433512",
 "DecimalLongitude is less than -148.801523798334"
 ]
}

 The dataset includes 115 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007180-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n9qnbq
title: Occurrence Download

description: A dataset containing 2139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apolygus lucorum (Meyer-Dur, 1843)"
 ]
}

 The dataset includes 2139 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045266-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsz9ez
title: Occurrence Download

description: A dataset containing 1300 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cystoseira compressa (Esper) Gerloff & Nizamuddin, 1975"
 ]
}

 The dataset includes 1300 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001453-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmku27
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Opisthocentrus ocellatus (Tilesius, 1811)"
 ]
}

 The dataset includes 409 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035365-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mz6n2x
title: Occurrence Download

description: A dataset containing 255 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cinclodes aricomae (Carriker, 1932)"
 ]
}

 The dataset includes 255 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078384-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.whiuja
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Country is Mexico",
 "Country is United States of America"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Sceloporus virgatus Smith, 1938",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 138 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007180-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3pak9
title: Occurrence Download

description: A dataset listing the 76452 species recorded in GBIF matching the query:
{
 "Country" : [
 "is Panama"
 ]
}

 The dataset's 76452 records were derived from 1424 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0335980-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57754/fdat.8zk89-12596
title: Self-paced reading study "Korat"

description: The aim of the study is to partially replicate the results from a previous eye-tracking study in a different paradigm, as well as control for the different syntax underlying the factor  conjunction type (um...zu and weil). The latter has an overt subject and object, whereas the former has a silent PRO subject. The overarching goal was to test whether the copula's situational argument is undespecified (Underspecification Account) or whether it is specified to a stative interpretation (State Account). In some contexts, e.g. in combination with particular adjectives, the copula can have an agentive interpretation.
The study had a self-paced reading paradigm with a moving window presentation. 40% of the sentences were followed by a comprehension question.  The study had a 2 × 2 design. 60 items were combined with 60 control sentences, 200 fillers with a standard syntax and 46 fillers with the conjunction in anteposition. The sentences were distributed over 4 randomised lists via the Latin square design. The experiment was preceeded by 9 exercise trials. There were at least two fillers between any two items. The experimental session included a break in the middle of the experiment. The first 3 sentences at the start of the experiment and after the break were fillers. The item and control sentences were divided in 6 or 7 IAs, depending on their length; the filler sentences had 6-8 segments.
The participants were seated in a quiet lab in front of a computer screen and used the keyboard  to navigate in the experiment. The experiment was programmed in E-Prime 3.
description: Research carried out in work package A01 of the SFB 833.
DOI: 10.15468/dl.rxwanz
title: Occurrence Download

description: A dataset containing 16943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ammoperdix heyi (Temminck, 1825)"
 ]
}

 The dataset includes 16943 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024330-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vagdhm
title: Occurrence Download

description: A dataset containing 102538 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-8.71396 42.38178,-8.24819 42.38178,-8.24819 42.38936,-8.24819 42.6593,-8.68096 42.66417,-8.71396 42.38178))"
 ]
}

 The dataset includes 102538 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024328-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkwh2z
title: Occurrence Download

description: A dataset containing 885595 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is BirdMap Data - GPS tracking of Storks, Cranes and birds of prey, breeding in Northern and Eastern Europe"
 ]
}

 The dataset includes 885595 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024329-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dgud7g
title: Occurrence Download

description: A dataset containing 2531 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Cryptolaemus montrouzieri Mulsant, 1853",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 2531 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024331-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13803913
title: Supplementary Dataset: Biological oscillations without genetic oscillator or external forcing
DOI: 10.5281/zenodo.13803914
title: Supplementary Dataset: Biological oscillations without genetic oscillator or external forcing
DOI: 10.6084/m9.figshare.26510896
title: STEM data - "Serotonergic modulation of swallowing in a complete fly vagus nerve connectome"

description: Primary data of Schoofs et al. 2024 “Serotonergic modulation of swallowing in a complete fly vagus nerve connectome”. Information about methodology and data can be obtained from the STAR Methods section.
DOI: 10.5281/zenodo.11098002
title: CSRM Level 2 dataset: long-period Rayleigh wave ellipticity in continental China from earthquake data

description: This dataset contains the long-period Rayleigh wave ellipticity (20 - 80 s in period) measured from three-component Rayleigh wave waveforms of 9361 tele-seismic events recorded by 4193 seismic stations deployed in continental China during 1990 and 2020. This dataset results from a project of constructing the high-resolution China Seismological Reference Model (CSRM-1.0) in the top 100 km of the crust and uppermost mantle in continental China (Xiao et al, JGR, 2024) (model link). 

本数据库包含了利用 1990 至 2020 年间中国大陆区域 4193 个地震台站记录的 9361 个远震瑞利波波形测量得到的长周期瑞利波偏振( 周期 20 - 80 s )。该数据库源于构建中国大陆区域高精度地壳和上地幔顶部100 公里三维地震学模型(CSRM-1.0)的工作 (Xiao et al, JGR, 2024) (模型链接) 。

If you face any problem or issue in the usage of this dataset, please feel free to communicate with the corresponding author Xiao Xiao (xiaox.seis@gmail.com).
DOI: 10.5281/zenodo.11098003
title: CSRM Level 2 dataset: long-period Rayleigh wave ellipticity in continental China from earthquake data

description: This dataset contains the long-period Rayleigh wave ellipticity (20 - 80 s in period) measured from three-component Rayleigh wave waveforms of 9361 tele-seismic events recorded by 4193 seismic stations deployed in continental China during 1990 and 2020. This dataset results from a project of constructing the high-resolution China Seismological Reference Model (CSRM-1.0) in the top 100 km of the crust and uppermost mantle in continental China (Xiao et al, JGR, 2024) (model link). 

本数据库包含了利用 1990 至 2020 年间中国大陆区域 4193 个地震台站记录的 9361 个远震瑞利波波形测量得到的长周期瑞利波偏振( 周期 20 - 80 s )。该数据库源于构建中国大陆区域高精度地壳和上地幔顶部100 公里三维地震学模型(CSRM-1.0)的工作 (Xiao et al, JGR, 2024) (模型链接) 。

If you face any problem or issue in the usage of this dataset, please feel free to communicate with the corresponding author Xiao Xiao (xiaox.seis@gmail.com).
DOI: 10.5281/zenodo.13814203
title: Survey on the social impact of the citizen science in the projects LIFE MIPP and InNat

description: The present dataset consists in a sociological survey addressed to the volunteers involved in MIPP and InNat projects, a citizen science initiative aimed at the collection of distribution data of protected species and habitats all over Italian national territory. In particular, two different files are provided: 



the original survey (questions and answers) addressed to the volunteers in Italian

the English translation of the questionnaire 


The survey covers different topics: socio-demographic data (section 1), opinions on the role of volunteering in a citizen science project (section 2), possible previous citizen science experience (section 3), test on the acquired skills on the monitored insect species with MIPP/InNat (section 4), opinions concerning the ecological crisis and the trust in the ability of humankind to solve environmental issues (section 5), possibility to be further contacted for additional interviews (section 6).

A total of 364 completed questionnaires have been collected and relative results are provided here. Moreover, the above-mentioned results are  thoroughly investigated and analysed in a scientific paper which also explores drivers that might keep volunteers active in a biodiversity monitoring project. Indeed, the engagement of volunteers in citizen science projects is a remarkable issue to address in order to ensure long-term sustainability, scientific relevance and public participation.

The MIPP/InNat initiative started in 2012, with the project MIPP “Monitoring of insects with public participation” (LIFE11 NAT/IT/000252) which ended in 2017, and was then continued by the InNat project thanks to Italian National fundings. Data gathered in both projects converged in the same database. This research was supported by the National Recovery and Resilience Plan (NRRP), Mission 4 Component 2 Investment 1.4 - Call for tender No. 3138 of 16 December 2021, rectified by Decree n.3175 of 18 December 2021 of Italian Ministry of University and Research funded by the European Union – 1034 of 17 June 2022 adopted by the Italian Ministry of University and Research, CUP B83D21014060006, Project title “National Biodiversity Future Center” – NBFC.
DOI: 10.5281/zenodo.13814204
title: Survey on the social impact of the citizen science in the projects LIFE MIPP and InNat

description: The present dataset consists in a sociological survey addressed to the volunteers involved in MIPP and InNat projects, a citizen science initiative aimed at the collection of distribution data of protected species and habitats all over Italian national territory. In particular, two different files are provided: 



the original survey (questions and answers) addressed to the volunteers in Italian

the English translation of the questionnaire 


The survey covers different topics: socio-demographic data (section 1), opinions on the role of volunteering in a citizen science project (section 2), possible previous citizen science experience (section 3), test on the acquired skills on the monitored insect species with MIPP/InNat (section 4), opinions concerning the ecological crisis and the trust in the ability of humankind to solve environmental issues (section 5), possibility to be further contacted for additional interviews (section 6).

A total of 364 completed questionnaires have been collected and relative results are provided here. Moreover, the above-mentioned results are  thoroughly investigated and analysed in a scientific paper which also explores drivers that might keep volunteers active in a biodiversity monitoring project. Indeed, the engagement of volunteers in citizen science projects is a remarkable issue to address in order to ensure long-term sustainability, scientific relevance and public participation.

The MIPP/InNat initiative started in 2012, with the project MIPP “Monitoring of insects with public participation” (LIFE11 NAT/IT/000252) which ended in 2017, and was then continued by the InNat project thanks to Italian National fundings. Data gathered in both projects converged in the same database. This research was supported by the National Recovery and Resilience Plan (NRRP), Mission 4 Component 2 Investment 1.4 - Call for tender No. 3138 of 16 December 2021, rectified by Decree n.3175 of 18 December 2021 of Italian Ministry of University and Research funded by the European Union – 1034 of 17 June 2022 adopted by the Italian Ministry of University and Research, CUP B83D21014060006, Project title “National Biodiversity Future Center” – NBFC.
DOI: 10.6084/m9.figshare.27074250
title: Epigenetic landscape of intestinal cell line HT29 cocultured with <i>Lacticaseibacillus</i>

description: <b>Aim:</b> To investigate the changes in epigenetic landscape of HT29 cells upon coculture with the <i>Lacticaseibacillus.</i> <b>Materials & methods:</b> Histone and m6A mRNA modifications were examined by biochemical and NGS-based methods including western blotting, colorimetric assays, ChIP-Seq and direct mRNA sequencing. LC-MS was performed to identify <i>Lacticaseibacillus</i> secretome. <b>Results:</b> In cocultured HT29 cells global enrichment of H3K9ac and H3K4me3 and depletion of H3K9me3 mark was observed; mean genic positional signals showed depletion of H3K9ac and H3K4me3 at the TSS but enrichment in the upstream region; m6A methylation was altered in mRNAs corresponding to specific gene pathways; <i>Lacticaseibacillus</i> HU protein interacts with histone H3. <b>Conclusion: </b><i>Lacticaseibacillus</i> can epigenetically alter specific genetic pathways in human intestinal cells. <i>Lactocaseibacillus</i>, considered as a good bacterium, is present in human gut and helps in maintaining good health of an individual. In this study, we have examined how this bacterium influences the regulation of gene expression in the intestinal cells. We observed that <i>L. rhamnosus</i> alters the packaging of DNA into chromatin by altering histone modifications and methylation of adenine residues in the mRNA molecules. This was found to be correlated with interaction of <i>Lactocaseibacillus</i> histone-like protein, HU, with histone H3 in the intestinal cell nucleus. Global and local distribution of activating and repressive histone modifications in HT29 cells are altered upon coculture with <i>L. rhamnosus</i>. mRNAs in control and cocultured HT29 cells are differentially methylated for m6A. Histone modifications and m6A mRNA methylation acts in conjunction to differentially regulate gene expression in cocultured HT29 cells. Epigenetic effector proteins like histone-like protein, HU, are components of <i>L. rhamnosus</i> secretome. <i>L. rhamnosus</i> histone-like protein, HU, has the capability of interacting with histone H3 inside HT29 cell nucleus.
DOI: 10.6084/m9.figshare.27074250.v1
title: Epigenetic landscape of intestinal cell line HT29 cocultured with <i>Lacticaseibacillus</i>

description: <b>Aim:</b> To investigate the changes in epigenetic landscape of HT29 cells upon coculture with the <i>Lacticaseibacillus.</i> <b>Materials & methods:</b> Histone and m6A mRNA modifications were examined by biochemical and NGS-based methods including western blotting, colorimetric assays, ChIP-Seq and direct mRNA sequencing. LC-MS was performed to identify <i>Lacticaseibacillus</i> secretome. <b>Results:</b> In cocultured HT29 cells global enrichment of H3K9ac and H3K4me3 and depletion of H3K9me3 mark was observed; mean genic positional signals showed depletion of H3K9ac and H3K4me3 at the TSS but enrichment in the upstream region; m6A methylation was altered in mRNAs corresponding to specific gene pathways; <i>Lacticaseibacillus</i> HU protein interacts with histone H3. <b>Conclusion: </b><i>Lacticaseibacillus</i> can epigenetically alter specific genetic pathways in human intestinal cells. <i>Lactocaseibacillus</i>, considered as a good bacterium, is present in human gut and helps in maintaining good health of an individual. In this study, we have examined how this bacterium influences the regulation of gene expression in the intestinal cells. We observed that <i>L. rhamnosus</i> alters the packaging of DNA into chromatin by altering histone modifications and methylation of adenine residues in the mRNA molecules. This was found to be correlated with interaction of <i>Lactocaseibacillus</i> histone-like protein, HU, with histone H3 in the intestinal cell nucleus. Global and local distribution of activating and repressive histone modifications in HT29 cells are altered upon coculture with <i>L. rhamnosus</i>. mRNAs in control and cocultured HT29 cells are differentially methylated for m6A. Histone modifications and m6A mRNA methylation acts in conjunction to differentially regulate gene expression in cocultured HT29 cells. Epigenetic effector proteins like histone-like protein, HU, are components of <i>L. rhamnosus</i> secretome. <i>L. rhamnosus</i> histone-like protein, HU, has the capability of interacting with histone H3 inside HT29 cell nucleus.
DOI: 10.6084/m9.figshare.26661340
title: Immunogenicity of trivalent DNA vaccine candidate encapsulated in Chitosan-TPP nanoparticles against EV-A71 and CV-A16

description: <b>Aim:</b> To develop a trivalent DNA vaccine candidate encapsulated in Chitosan-TPP nanoparticles against hand foot and mouth disease (HFMD) and assess its immunogenicity in mice. <b>Materials & methods:</b> Trivalent plasmid carrying the VP1 and VP2 genes of EV-A71, VP1 gene of CV-A16 was encapsulated in Chitosan-TPP nanoparticles through ionic gelation. <i>In vitro</i> characterization and <i>in vivo</i> immunization studies of the CS-TPP-NPs (pIRES-VP121) were performed. <b>Results:</b> Mice administered with CS-TPP NPs (pIRES-VP121) intramuscularly were observed to have the highest IFN-γ response. Sera from mice immunized with the naked pDNA and CS-TPP-NPs (pIRES-VP121) demonstrated good viral clearance against wild-type EV-A71 and CV-A16 in RD cells. <b>Conclusion:</b> CS-TPP-NPs (pIRES-VP121) could serve as a prototype for future development of multivalent HFMD DNA vaccine candidates. Currently, there are no US-FDA approved vaccine against HFMD. China-FDA approved monovalent HFMD inactivated vaccines were unable to provide cross protection against other enterovirus serotypes. We have developed a trivalent plasmid vaccine candidate, pIRES-VP121 which encodes the VP1 and VP2 genes of EV-A71 and the VP1 gene of CV-A16. We successfully synthesized Chitosan TPP nanoparticles encapsulating DNA Encapsulation of plasmid vaccine candidate pIRES-VP121 through ionic gelation, yielding highly monodisperse nanoparticles with CS-TPP-NPs (pIRES-VP121) with &gt;70% encapsulation efficiency. Encapsulation of plasmid vaccine candidate pIRES-VP121 through ionic gelation successfully formulated sub-200 nm, spherical shaped, mildly cationic (+10 mV) and highly monodisperse CS-TPP-NPs (pIRES-VP121) with &gt;70% encapsulation efficiency. Chitosan NPs encapsulations improved T cell immunogenicity resulting in higher IFN-γ expressing CD4<sup>+</sup>/CD8<sup>+</sup> T cells population and IFN-γ secretion compared with mice immunized with naked pIRES-VP121. Enhanced B cell neutralizing efficacy were demonstrated by mice sera (1:16 dilution) immunized with CS-TPP-NPs (pIRES-VP121) against the wild-type EV-A71 B4 and CV-A16/N132 strain enteroviruses in comparison with naked pIRES-VP121 immunization. These findings showed the potential of a trivalent DNA plasmid to serve as a prototype for future development of multivalent DNA vaccine candidate against HFMD.