cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p4r01pq
title: Data from: Electromagnetic source imaging in presurgical workup of patients with epilepsy: a prospective study

description: Objective: To determine the diagnostic accuracy and clinical utility of
 electromagnetic source imaging (EMSI) in presurgical evaluation of
 patients with epilepsy. Methods: We prospectively recorded
 magnetoencephalography (MEG) simultaneously with electroencephalography
 (EEG) and performed EMSI, comprising electric (ESI), magnetic source
 imaging (MSI) and analysis of combined MEG-EEG datasets (cEMSI), using two
 different software packages. As reference standard for irritative zone
 (IZ) and seizure onset zone (SOZ) we used intracranial recordings and for
 localization accuracy, outcome one year after operation. Results: We
 included 141 consecutive patients. EMSI showed localized epileptiform
 discharges (ED) in 94 patients (67%). Most of the ED-clusters (72%) were
 identified by both modalities, 15% only by EEG and 14% only by MEG.
 Agreement was substantial between inverse solutions and moderate between
 software packages. EMSI provided new information that changed the
 management plan in 34% of the patients, and these changes were useful in
 80%. Depending on the method, EMSI had a concordance of 53-89% with IZ and
 35%-73% with SOZ. Localization accuracy of EMSI was between 44% and 57%,
 which was not significantly different from MRI (49-76%) and PET (54-85%).
 cEMSI achieved significantly higher odds ratio compared to ESI and MSI.
 Conclusions: EMSI has accuracy similar to established imaging methods and
 provides clinically useful, new information in 34% of the patients.
 Classification of Evidence: This study provides Class IV evidence that
 EMSI had a concordance of 53-89% and 35%-73% (depending on analysis) for
 the localization of epilepsy as compared with intracranial recordings - IZ
 zone and SOZ respectively.
description: De-identified
 dataMagnetoencephalography
 by Electa and EEG easy cap. Recorded on maintenance antiepileptic drugs
 for 1.5 hours. Electromagnetic soureimaging using both BESA and CURRY
 software. Both compared to MR and PETelectromagnetic sourceimaging
 epilepsy surgery.zipAppendix
 1-9Supporting documents for
 the paper.
DOI: 10.5061/dryad.258nm86
title: Data from: A population genetic assessment of taxonomic species: the case of Lake Malawi cichlid fishes

description: Organisms sampled for population level research are typically assigned to
 species by morphological criteria. But if those criteria are limited to
 one sex or life stage, or the organisms come from a complex of closely
 related forms, the species assignments may misdirect analyses. The impact
 of such sampling can be assessed from the correspondence of genetic
 clusters, identified only from patterns of genetic variation, to the
 species identified using only phenotypic criteria. We undertook this
 protocol with the rock-dwelling mbuna cichlids of Lake Malawi, for which
 species within genera are usually identified by investigators using adult
 male coloration patterns. Given high local endemism of male color
 patterns, and considerable allele sharing among species, there persists
 considerable taxonomic uncertainty in these fishes. Over 700 individuals
 from a single transect were photographed, genotyped, and separately
 assigned: (1) to morphospecies using photographs; and (2) to genetic
 clusters using five widely used methods. Overall, the correspondence
 between clustering methods was strong for larger clusters, but methods
 varied widely in estimated number of clusters. The correspondence between
 morphospecies and genetic clusters was also strong for larger clusters, as
 well as some smaller clusters for some methods. These analyses generally
 affirm (1) adult male-limited sampling and (2) the taxonomic status of
 Lake Malawi mbuna, as the species in our study largely appear to be
 well-demarcated genetic entities. More generally, our analyses highlight
 the challenges for clustering methods when the number of populations is
 unknown, especially in cases of highly uneven sample sizes.
description: Genotype
 dataThis file includes STR
 genotypes for 710 cichlid fish collected from Domwe Island in Lake Malawi
 in May 2008.FINAL_DATASET.xlsxBOOTSTRAPPED_DATAA zipped folder with bootstrapped data sets (structure format) used to calculate support for each cluster in each method.RESAMPLED_DATAA zipped folder with data sets (structure format) of 292 individuals resampled from the main dataset used to investigate male-bias patterns in the results.RESULTS_5_METHODSResults of the five clustering methods.SIMULATED_DATA_22_LOCIThis zipped folder includes 100 simulated datasets (22 loci).SIMULATED_DATA_100_lociThis is a zipped folder including 100 simulated data sets (100 loci).SPECIMEN_DATAThis file contains information about all individuals analysed, as well as a link to a photograph.
DOI: 10.5061/dryad.24b7j2b
title: Data from: Integrative approaches to guide conservation decisions: using genomics to define conservation units and functional corridors

description: Climate change and increasing habitat loss greatly impact species
 survival, requiring range shifts, phenotypic plasticity and/or
 evolutionary change for long term persistence, which may not readily occur
 unaided in threatened species. Therefore, defining conservation actions
 requires a detailed assessment of evolutionary factors. Existing genetic
 diversity needs to be thoroughly evaluated and spatially mapped to define
 conservation units (CUs) in an evolutionary context, and we address that
 here. We also propose a multidisciplinary approach to determine corridors
 and functional connectivity between CUs by including genetic diversity in
 the modelling while controlling for isolation-by-distance and
 phylogeographic history. We evaluate our approach on a near-threatened
 Iberian endemic rodent by analysing genotyping-by-sequencing (GBS) genomic
 data from 107 Cabrera voles (Microtus cabrerae), screening the entire
 species distribution to define categories of CUs and their connectivity:
 we defined six management units (MUs) which can be grouped into four
 evolutionarily significant units (ESUs) and three (putatively) adaptive
 units (AUs). We demonstrate that the three different categories of CU can
 be objectively defined using genomic data, and their characteristics and
 connectivity can inform conservation decision-making. In particular, we
 show that connectivity of the Cabrera vole is very limited in eastern
 Iberia, and that the pre-Pyrenean and part of the Betic geographic nuclei
 contribute the most to the species genetic diversity. We argue that a
 multidisciplinary framework for CU definition is essential, and that this
 framework needs a strong evolutionary basis.
description: MC_GBS_L50_MD303341 loci analysed for this study. Individuals have less than 30% missing data.Barbosa_etal_MC_GBS_L50_MD30_genepop.txtNeighbour joining majority rule consensus treeNeighbour joining majority rule consensus tree with random sampling haplotypes, obtained using the RRHS software (1000 replicates).treesfile_L50_MD30.t
DOI: 10.5061/dryad.hd575
title: Data from: Functional roles of Mg2+ binding sites in ion-dependent gating of a Mg2+ channel, MgtE, revealed by solution NMR

description: Magnesium ions (Mg2+) are divalent cations essential for various cellular
 functions. Mg2+ homeostasis is maintained through Mg2+ channels such as
 MgtE, a prokaryotic Mg2+ channel whose gating is regulated by
 intracellular Mg2+ levels. Our previous crystal structure of MgtE in the
 Mg2+-bound, closed state revealed the existence of seven
 crystallographically-independent Mg2+-binding sites, Mg1–Mg7. The role of
 Mg2+-binding to each site in channel closure remains unknown. Here, we
 investigated Mg2+-dependent changes in the structure and dynamics of MgtE
 using nuclear magnetic resonance spectroscopy. Mg2+-titration experiments,
 using wild-type and mutant forms of MgtE, revealed that the Mg2+ binding
 sites Mg1, Mg2, Mg3, and Mg6, exhibited cooperativity and a higher
 affinity for Mg2+, enabling the remaining Mg2+ binding sites, Mg4, Mg5,
 and Mg7, to play important roles in channel closure. This study revealed
 the role of each Mg2+-binding site in MgtE gating, underlying the
 mechanism of cellular Mg2+ homeostasis.
description: NMR spectra of
 MgtEThese files can be
 analyzed by CARA software. Mg concentration is indicated in each file
 name.MgtE_NMRdata.zip
DOI: 10.5061/dryad.1md2jq1
title: Data from: Effects of sample fixation on specimen identification in biodiversity assemblies based on proteomic data (MALDI-TOF)

description: Recently, MALDI-TOF mass spectrometry has been used to reliably identify
 taxonomically difficult harpacticoid copepods from sediment samples. In
 agreement with former studies, a negative impact of short storage periods
 was stated. Other studies reported inferior mass spectra quality from
 samples fixated in varying ethanol concentrations. Therefore, sediment
 samples from a mudflat sampling site in the North Sea were stored under
 different temperature conditions to explore a possible storage effect.
 Samples were fixated with either 70% or 100% ethanol and specimens were
 measured using MALDI-TOF mass spectrometry after one, two, three, five,
 seven and 12 weeks. The changes in number of peaks per species and the
 ability to identify specimens based on mass spectra were analyzed quality
 measurements. We show that storage temperature had a major impact on data
 quality, as for some species a loss of up to 50% of mass peaks and an
 increase of failed measurements to over 70% was observed. However, the
 effect of different ethanol concentrations on data quality was negligible.
 Concluding from these results, storage of metazoan samples in general and,
 particularly, of sediment samples at low temperatures of around -25°C is
 recommended to receive high-quality mass spectra for specimen
 identification.
description: Hellinger transformed
 MALDI-TOF MS intensity matrix of all studied specimensThe dataset contains
 hellinger transformed MALDI-TOF MS data measured with a Microflex LT/SH
 System (Bruker Daltonics) with a range from 3,000 to 15,000 m/z from 2,316
 harpacticoid copepods from the North Sea (see publication for details).
 The rows contain the measured species. The first column contains sample
 names, the second column contains species names, the third column contains
 measurement weeks, the fourth column contains ethanol concentrations and
 the fifth column contains storage temperature. The remaining columns
 contain the 1,220 m/z values as names and the intensities as
 values.Effects_of_sample_fixation_for_MALDI-TOF.csv
DOI: 10.5061/dryad.61m318c
title: Data from: Fruiting phenology is linked to rainfall variability in a tropical rain forest

description: As the influence of climate change on tropical forests becomes apparent,
 more studies are needed to understand how changes in climatic variables
 like rainfall are likely to affect tree phenology. Using a twelve-year
 dataset (2005–2016), we studied the impact of seasonal rainfall patterns
 on the fruiting phenology of 69 tree species in the rain forest of
 southeastern Madagascar. We found that average annual rainfall in this
 region has increased by &gt;800mm (23%) during this period relative to
 that recorded for the previous 40 years, and was highly variable both
 within and between years. Higher monthly measures of fruiting richness and
 the intensity of fruiting in our sample community were significantly
 associated with higher levels of rainfall. We also found that less
 rainfall during the dry season, but not the wet season, was associated
 with a significant shift toward later timing of peak richness and peak
 intensity of fruiting in the subsequent 12 months; however, this pattern
 was driven primarily by an extreme drought event that occurred during the
 study period. Longer time scales of phenology data should be examined in
 the future to see if this pattern holds. Madagascar is expected to
 experience more extremes in rainfall and drought with increasing climate
 change. Thus, understanding the impacts of variable precipitation on the
 timing of reproduction of forest trees will have important consequences
 for plant reproduction and the ability of Madagascar’s wildlife to cope
 with a changing climate.
description: Phenology
 dataThis file contains
 fruiting phenology data, from 2005-2016, for 457 individuals from 69
 common tree species in Ranomafana National Park,
 Madagascar.phenology_rnp.xlsxRainfall dataThis file contains monthly rainfall data for Ranomafana National Park, collected from 2005-2016 from the Centre ValBio research station.rainfall_rnp.xlsx
DOI: 10.5061/dryad.t6v7t8s
title: Data from: SiSTL1, encoding a large subunit of ribonucleotide reductase, is crucial for plant growth, chloroplast biogenesis, and cell cycle progression in Setaria italica

description: The activity of ribonucleotide reductase (RNR), which catalyzes the
 transformation of four ribonucleoside diphosphates (NDPs) to their
 corresponding deoxyribonucleoside diphosphates (dNDPs), is the main
 determiner of the cellular concentration of dNTP pools and should be
 tightly coordinated with DNA synthesis and cell-cycle progression. Either
 constitutively increased or decreased RNR activity are indeed likely to
 interfere with DNA replication and lead to arrested cell cycle
 progression; however, the mechanisms underlying these disruptive effects
 in higher plants remain to be uncovered. In this study, we identified a
 RNR large subunit mutant, sistl1, in Setaria italica (foxtail millet),
 that exhibited growth retardation as well as striped leaf phenotype, i.e.,
 irregularly reduced leaf vein distances and decreased chloroplast
 biogenesis. We determined that a Gly737 to Glu substitution occurrring in
 the C-terminus of the SiSTL1 protein slightly affected its optimal
 function, leading in turn to the reduced expression of genes variously
 involved in the assembly and activation of the DNA pre-replicative
 complex, elongation of replication forks and S phase entry. Our study
 provides new insight into how SiSTL1 regulates plant growth, chloroplast
 biogenesis, and cell cycle progression in Poaceae crops.
description: Raw data from expression
 levels of SiSTL1 , SiSTL1-2, SiSTL1-3, E2F1 and E2F2Raw data from density
 curves of the BSCs and MCs containing zero to sixRaw data from expression
 levels of 11 representative cell-cycle regulatory genesRaw data from flow
 cytometric analysisRaw data from the
 germination trials 20181119Raw data from the germination
 trials.xlsx
DOI: 10.5061/dryad.j992pv8
title: Data from: Measures of effective population size in sea otters reveal special considerations for wide-ranging species

description: Conservation genetic techniques and considerations of the evolutionary
 potential of a species are increasingly being applied to species
 conservation. For example, effective population size (Ne) estimates are
 useful for determining the conservation status of species, yet accurate
 estimates of current Ne remain difficult to obtain. The effective
 population size can contribute to setting federal delisting criteria, as
 was done for the southern sea otter (Enhydra lutris nereis). After being
 hunted to near extinction during the North Pacific fur trade, the southern
 sea otter has recovered over part of its former range, but remains at
 relatively low numbers, making it desirable to obtain accurate and
 consistent estimates of Ne. Although theoretical papers have compared the
 validity of several methods, comparisons of estimators using empirical
 data in applied conservation settings are limited. We combined thirteen
 years of demographic and genetic data from 1,006 sea otters to assess
 multiple Ne estimators, as well as temporal trends in genetic diversity
 and population genetic structure. Genetic diversity was low and did not
 increase over time. There was no evidence for distinct genetic units, but
 some evidence for genetic isolation by distance. Notably, estimates of Ne
 based on demographic data were much larger than genetic estimates when
 computed for the entire range of the population, but were similar at
 smaller spatial scales. The discrepancy between estimates at large spatial
 scales could be driven by cryptic population structure and/or individual
 differences in reproductive success. We recommend the development of new
 delisting criteria for the southern sea otter. We advise the use of
 multiple estimates of Ne for other wide-ranging species, species with
 overlapping generations, or with sex biased dispersal, as well as the
 development of improved metrics of genetic assessments of populations.
description: Gagne_etal_EvoApps_SeaOtter_GenotypesGenotype data for all sea otters included in the study.Gagne_etal_EvoApps_SeaOtter_DateOfBirthGenotype data with associated estimated birth year of individuals.Gagne_etal_EvoApps_SeaOtter_wGPSGenotype data with major region and GPS location of sample collection.
DOI: 10.5061/dryad.2dh0223
title: Data from: Jaguar Movement Database: a GPS-based movement dataset of an apex predator in the Neotropics

description: The field of movement ecology has rapidly grown during the last decade,
 with important advancements in tracking devices and analytical tools that
 have provided unprecedented insights into where, when, and why species
 move across a landscape. Although there has been an increasing emphasis on
 making animal movement data publicly available, there has also been a
 conspicuous dearth in the availability of such data on large carnivores.
 Globally, large predators are of conservation concern. However, due to
 their secretive behavior and low densities, obtaining movement data on
 apex predators is expensive and logistically challenging. Consequently,
 the relatively small sample sizes typical of large carnivore movement
 studies may limit insights into the ecology and behavior of these elusive
 predators. The aim of this initiative is to make available to the
 conservation-scientific community a dataset of 134,690 locations of
 jaguars (Panthera onca) collected from 117 individuals (54 males and 63
 females) tracked by GPS technology. Individual jaguars were monitored in
 five different range countries representing a large portion of the
 species’ distribution. This dataset may be used to answer a variety of
 ecological questions including but not limited to: improved models of
 connectivity from local to continental scales; the use of natural or
 human-modified landscapes by jaguars; movement behavior of jaguars in
 regions not represented in this dataset; intraspecific interactions; and
 predator-prey interactions. In making our dataset publicly available, we
 hope to motivate other research groups to do the same in the near future.
 Specifically, we aim to help inform a better understanding of jaguar
 movement ecology with applications towards effective decision making and
 maximizing long-term conservation efforts for this ecologically important
 species.
description: DataS1The archive has 2 files.
 The first file has general information about captured animals (estimated
 age, weight, collar used, etc.). The second file has general information
 on animals' location.
DOI: 10.60797/jae.2026.65.6.1
title: Некоторые свойства опада растений-торфообразователей

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.1.1
title: Результаты испытаний по оценке стабильности ферментной кормовой добавки «Амизим» при хранении в рекомендуемых условиях

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.2.1
title: Abundance of total bacterial (16S rRNA) and RubisCO (cbbL and cbbM) genes during the soil incubation experiment

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.3.1
title: Results of studies of biometric indicators of soybean plants by varieties for the period of harvesting

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.5.1
title: Сравнительный анализ климатических и ландшафтных показателей за исследуемые периоды

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.5061/dryad.413tm83
title: Data from: Lysine-14 acetylation of histone H3 in chromatin confers resistance to the deacetylase and demethylase activities of an epigenetic silencing complex

description: The core CoREST complex (LHC) contains histone deacetylase HDAC1 and
 histone demethylase LSD1 held together by the scaffold protein CoREST.
 Here we analyze the purified LHC with modified peptide and reconstituted
 semisynthetic mononucleosome substrates. LHC demethylase activity toward
 methyl-Lys4 in histone H3 is strongly inhibited by H3 Lys14 acetylation,
 and this appears to be an intrinsic property of the LSD1 subunit.
 Moreover, the deacetylase selectivity of LHC unexpectedly shows a marked
 preference for H3 acetyl-Lys9 versus acetyl-Lys14 in nucleosome substrates
 but this selectivity is lost with isolated acetyl-Lys H3 protein. This
 diminished activity of LHC for Lys14 deacetylation in nucleosomes is not
 merely due to steric accessibility based on the pattern of sensitivity of
 the LHC enzymatic complex to hydroxamic acid-mediated inhibition. Overall,
 these studies have revealed how a single Lys modification can confer a
 composite of resistance in chromatin to a key epigenetic enzyme complex
 involved in gene silencing.
description: Figure
 2AFigure
 2B-EFigure 2–figure supp
 2.Figure
 3AFigure 3B and
 suppBFigure 3–figure
 supp1Figure
 4BFigure 4–figure
 supp1.Figure 4–figure
 supp4-1.HNMR Raw
 DataFigure 4–figure
 supp4-2HNMR raw
 dataFigure
 5AFigure
 5BFigure 5–figure
 supp1Figure
 6AFigure
 6AFigure
 6BFigure
 6CFigure 6–figure
 supp1Figure 6–figure
 supp2.FIgure 7 and
 supp
DOI: 10.60797/jae.2026.65.3.2
title: Chemical composition of the stalks and leaves of the soy variety Sentyabrinka

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.4.2
title: Характеристика климатических зон Чеченской Республики

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.5.2
title: Анализ изменений в структуре ландшафтов Чеченской Республики

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.4.3
title: Физико-географические параметры зон Чеченской Республики

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.3.4
title: The degree of grinding of soy straw during harvesting combines RSM-101 "Vector"

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026
DOI: 10.60797/jae.2026.65.4.4
title: Сравнительный ветровой потенциал субъектов Северо-Кавказского федерального округа

description: Journal of Agriculture and Environment, Выпуск 1 (65) 2026