cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25584/ppi/2475747
title: S. elongatus PCC 7942 Carbon Metabolism Proteomics (MC-DP2)

description: The purpose of this experiment was to examine the redox proteome of S. elongatus PCC 7942 CscB/SPS under different light conditions (light and dark) and culture conditions (dense and dilute optical density). Samples were processed using a resin-assisted capture (RAC) workflow with TMT labeling to enrich and quantify protein cysteines which were differentially oxidized under four conditions. The datasets were generated by a Q Exactive Plus Orbitrap Mass Spectrometer coupled with a Waters nanoAcquity UPLC, then searched by MSGF+ for downstream redox PTM analysis.
DOI: 10.15468/dl.2jxhrk
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.41.27_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 605 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009934-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/a7s9w9
title: Data Management and Sharing Plan for: Telerehabilitation In The Home After Stroke: A Randomized, Controlled, Assessor-Blind Clinical Trial (The TR-2 Trial)

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.6084/m9.figshare.24274894.v3
title: Supplementary information from "<b>The role of environmental factors on visual communication in Neotropical anurans</b>"

description: Visual signals are a widespread behavioural attribute of communication among vertebrates, often employed during intrasexual competition or mate attraction,  ultimately influencing reproductive success. Despite their importance, the environmental factors driving visual signal evolution remain poorly understood. We investigated this issue in Neotropical anurans by testing how environmental factors, such as humidity and vegetation heterogeneity predict richness of species employing visual signals and signal richness. Using a dataset of 236 anuran species with documented visual signals, we conducted spatial and phylogenetic analyses using Aridity Index (AI) and Normalized Difference Vegetation Index (NDVI) as proxies of humidity and environmental heterogeneity, respectively. We analysed the data for all species collectively and subsets categorised by habit (diurnal, nocturnal) and breeding habitat (lotic, non-lotic). Our results highlight that Neotropical tropical forests harbor the greatest richness of species employing visual signals, as well as the highest signal richness. Although we observed significant correlations between visual signal distribution and environmental predictors, their explanatory power was inconsistent in both assemblage-based and cross-species approaches. We proposed that visual signals in anurans are predominantly used in water-saturated environments over shorter distances, which may explain the poor correlations with broad-scaled environmental predictors. Future studies should incorporate finer spatial scales and interpopulational variations to better determine the visual signals evolution in anurans.
DOI: 10.20391/6c040db3-1368-4a97-8414-e3ec103ba5a0
title: Data to support "An Experimental and Theoretical Determination of Oscillatory Shear-Induced Crystallization Processes in Viscoelastic Photonic Crystal Media"

description: A study is presented of the oscillatory shear-ordering dynamics of viscoelastic photonic crystal media, using an optical shear cell. The hard-sphere/”sticky”-shell design of these polymeric composite particles produces athermal, quasi-solid rubbery media, with a characteristic viscoelastic ensemble response to applied shear. Monotonic crystallization processes, as directly measured by the photonic stopband transmission, are tracked as a function of strain amplitude, oscillation frequency, and temperature. A complementary generic spatio-temporal model is developed of crystallization due to shear-dependent interlayer viscosity, giving propagating crystalline fronts with increasing applied strain, and a gradual transition from interparticle disorder to order. The introduction of a competing shear-induced flow degradation process, dependent on the global shear rate, gives solutions with both amplitude and frequency dependence. The extracted crystallization timescales show parametric trends which are in good qualitative agreement with experimental observations.
DOI: 10.20391/9ba4df8f-2d28-4bce-b9b8-ec6368b636e0
title: Using Computer Vision to estimate Sphagnum colony density in the field

description: This dataset contains all the images used to develop an automated software able to calculate Sphagnum moss capitula density in the field as described in the linked paper. The images were acquired with a smartphone in the field and include images from 5 different Sphagnum species and 3 different sites as outlined in the read me file. The images are provided in a jpg format. Image information as well as the raw data obtained by image analysis using the developed software are also included as an excel file with 4 separate sheet.
DOI: 10.20391/4a0a5a9b-a69f-412a-a389-0edbd2069ff9
title: 3D Model of a hand specimen of the Rasthof Formation bearing lonestones and granule clusters

description: As supplementary material, we present a 3 D model of a hand specimen of the Rasthof Formation in .fbx format. It can be viewed in the free Windows 3D Viewer app, and imported to various other software platforms e.g. Agisoft Metashape. The model was constructed from 119 photos taken by Christoph Kettler in May 2020. The photographs were aligned, a dense point cloud generated, textured, and a 3 D model created following the standard photogrammetry workflow in Agisoft Metashape. The model was then exported to .fbx format for viewing on multiple different platforms.
DOI: 10.20391/a97740d2-bb68-45fe-af1d-3e10e424804e
title: Chromaticity of structural color in polymer thin film photonic crystals (DATA)

description: A three-dimensional goniometric study of thin-film polymer photonic crystals investigates how the chromaticity of structural color is correlated to structural ordering. Characterization of chromaticity and the angular properties of structural color are presented in terms of CIE 1931 color spaces. We examine the viewing angle dependency of the Bragg scattering cone relative to sample symmetry planes, and our results demonstrate how increased ordering influences angular scattering width and anisotropy. Understanding how the properties of structural color can be quantified and manipulated has significant implications for the manufacture of functional photonic crystals in sensors, smart fabrics, coatings, and other optical device applications.
DOI: 10.20391/e56ec24d-9aed-4d60-8a8c-1118d9b04490
title: Supporting information for "Flexible genes establish widespread bacteriophage pan-genomes in cryoconite hole ecosystems"

description: Bacteriophage genomes rapidly evolve via mutation and horizontal gene transfer to counter evolving bacterial host defenses; such arms race dynamics should lead to divergence between phages from similar, geographically isolated ecosystems. However, near-identical phage genomes can reoccur over large geographical distances and several years apart, conversely suggesting many are stably maintained. Here, we show that phages with near-identical core genomes in distant, discrete aquatic ecosystems maintain diversity by possession of numerous flexible gene modules, where homologous genes present in the pan-genome interchange to create new phage variants. By repeatedly reconstructing the core and flexible regions of phage genomes from different metagenomes, we show a pool of homologous gene variants co-exist for each module in each location, however, the dominant variant shuffles independently in each module. These results suggest that in a natural community, recombination is the largest contributor to phage diversity, allowing a variety of host recognition receptors and genes to counter bacterial defenses to co-exist for each phage.
DOI: 10.20391/e74e16cc-aa91-41b2-99d7-04465c23cf0a
title: Supporting Information for Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations - Data

description: Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations

We use data from NCBI RefSeq (see prokaryotes.csv) in amino acid format. From the NCBI genome list, FTP URLs are shown to download the files. The amino acid format files end in "_protein.faa.gz".

The list of genomes we used for the testing of the minimisation of the number of Lyndon factors and balancing the length of Lyndon factors is in testingGenomeList. The name of the genome we used for finding the mutation operator to use for the EA is in trainingGenome.

In our code, ModifiedDuvals was the working name of Flexi-Duval. Similarly, ModifiedDuvalsOperator refers to the LF-inspired operator.

NCBI have reduced the number of reference genomes https://ncbiinsights.ncbi.nlm.nih.gov/2020/02/14/assembly-changes/.
DOI: 10.20391/33e3a485-9c6e-4409-8f07-487794bdd962
title: Peniarth 44 + Llanstephan 1, tt. 102-45
DOI: 10.20391/3abf4ef1-e364-4cce-859d-92bf4035b303
title: 13th-century Middle Welsh Prose Manuscripts
DOI: 10.20391/c3311e54-44a5-425e-8f03-8c49479d71f0
title: Cotton Caligula A.iii
DOI: 10.20391/e391ef4d-93a8-4933-bdeb-23200dad68ad
title: Caerdydd 2.81
DOI: 10.20391/2943d7c8-5393-472e-bcf6-7ee93ac97233
title: Peniarth 01 (rhyddiaith Llyfr Du Caerfyrddin)
DOI: 10.20391/4122d9bf-c9ee-48ae-9834-4768178263a4
title: Peniarth 30 (Llyfr Colan)
DOI: 10.20391/8e8f98cc-a168-4863-b4fb-4cb9af67075b
title: Peniarth 14, tt. 79-90
DOI: 10.20391/ebe5d997-2d2d-4f61-a47b-a664c8b21f10
title: Peniarth 29 (Llyfr Du o’r Waun)
DOI: 10.20391/148879e0-6ce3-49d6-bf77-5d7597ba4422
title: Rhyddiaith y 15fed Ganrif
title: 15th-century Middle Welsh Prose Manuscripts

description: Testunau o ddeuddeg llawysgrif ar hugain o’r 15fed ganrif

Bwriad y prosiect yw digido rhyddiaith Gymraeg o’r llawysgrifau rhwng cyfnod y prosiect Rhyddiaith Gymraeg 1300–1425 a chyfnod y prosiect Corpws Hanesyddol yr Iaith Gymraeg 1500-1850
description: The texts of thirty-two 15th-century manuscripts

The project aims to digitise Middle Welsh prose manuscripts in the period between the project Welsh Prose 1300–1425 and the period of the project A Historical Corpus of the Welsh Language 1500-1850
DOI: 10.20391/8f137d06-4827-4829-ae7b-fac592d57942
title: Evolutionary genomics of anthroponosis in Cryptosporidium

description: Genomes of cryptosporidium species used in the linked paper but embargoed on NCBI. Note that other genomes are already available via NCBI.
DOI: 10.20391/f8b0ec24-5cce-4389-aa3f-6b8529b8543e
title: Supporting Information for "Massive subsurface ice formed by refreezing of ice-shelf melt ponds"

description: Supporting information including supplementary figures 2a to 5.
DOI: 10.20391/1f65fc66-6fb2-4a00-bb5f-633045590fc0
title: Bacterial communities of Irish Pacific Oysters

description: Bacterial communities of the Pacific oyster, Crassostea gigas, and overlying bacterioplankton at two Irish farms (Bannow Bay and Cromane).
DOI: 10.20391/35c7b57c-09a4-43e5-a7d7-89fb4f420be0
title: Collection of side view and top view RGB images of Brassica napus from a large scale, high throughput experiment

description: Top and side view RGB png images as analysed for 'Integrated Phenomics and Genomics reveals genetic loci associated with inflorescence growth in Brassica napus'.
Image collection details and examples of analysis are provided in the body and appendices of the paper.
The images were collected over a six week period, usually on a daily basis.
71 genotypes, two treatments, three replicates; total 426 plants.
1×top view image, 3×side view images (000, 045 & 090° rotations).

A standard, modern archival tool such as 7-Zip is required to extract the zip files
DOI: 10.20391/044206d3-08ce-4f34-8dfd-a88bf4c679bf
title: Data to support "Transparent Polymer Opal Thin Films with Intense UV Structural Color"

description: We report on shear-ordered polymer photonic crystals demonstrating intense structural color with a photonic bandgap at 270 nm. Our work examines this UV structural color, originating from a low refractive index contrast polymer composite system as a function of the viewing angle. We report extensive characterization of the angle-dependent nature of this color in the form of ‘scattering cones’, which showed strong reflectivity in the 275–315 nm range. The viewing range of the scattering was fully quantified for a number of planes and angles, and we additionally discuss the unique spectral anisotropy observed in these structures. Such films could serve as low-cost UV reflection coatings with applications in photovoltaics due to the fact of their non-photobleaching and robust mechanical behavior in addition to their favorable optical properties.
DOI: 10.20391/94b6d9e1-f728-4dc0-b438-e014801cbf43
title: Supporting Information for Heuristics for the run-length encoded Burrows–Wheeler transform alphabet ordering problem

description: Code and data for the paper
DOI: 10.5281/zenodo.18249586
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS260114u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS260114u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.18249585
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS260114u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS260114u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.awwm22
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.41.28_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009936-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18249583
title: Bolboschoenus maritimus (L.) Palla. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.5281/zenodo.18249584
title: Bolboschoenus maritimus (L.) Palla. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.15468/nvfej4
title: BORR - UC Berkeley, Blue Oak Ranch Reserve
DOI: 10.5281/zenodo.18249589
title: Bolboschoenus robustus (Pursh) Soják. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.5281/zenodo.18249588
title: Bolboschoenus robustus (Pursh) Soják. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.5281/zenodo.18249591
title: Boldrinia L.N.Silva. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.5281/zenodo.18249590
title: Boldrinia L.N.Silva. In: Marchesi E., Mailhos A. & Bonifacino J.M. (Eds.). Flora Uruguaya: Flora Vascular del Uruguay. ISSN 3121-2050, V. 1.0.

description: Citable snapshot. Includes PDF and CSV of collections. Date: January 13th, 2026 at 16:43
DOI: 10.15468/dl.5v4e97
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Elevation 610.0-1644.0m",
 "Geometry POLYGON((-76.04649 5.82837,-75.99565 5.82837,-75.99565 5.8696,-76.04649 5.8696,-76.04649 5.82837))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 78 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009938-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15139/s3/2treje
title: Data Management and Sharing Plan for: Long time dynamics and genealogies of stochastic reaction-diffusion systems

description: The Data Management and Sharing Plan describes the scientific data to be generated and/or used in the research and outlines a strategy for managing and sharing project data.
description: Data Management and Sharing Plan
DOI: 10.34740/kaggle/dsv/14500471
title: Key_Genes_Influencing
DOI: 10.15468/dl.awfd5g
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.41.29_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 37 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009939-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17848247
title: Supplementary material for Dean et al. -  Last Interglacial relative sea-level changes at Myrtle Beach, South Carolina

description: This repository contains the post-review version of the supplementary material for the manuscript Last Interglacial relative sea-level changes at Myrtle Beach, South Carolina .

 

See the readme file for specifics.
DOI: 10.5281/zenodo.17848246
title: Supplementary material for Dean et al. -  Last Interglacial relative sea-level changes at Myrtle Beach, South Carolina

description: This repository contains the post-review version of the supplementary material for the manuscript Last Interglacial relative sea-level changes at Myrtle Beach, South Carolina .

 

See the readme file for specifics.
DOI: 10.15468/dl.wjxwy7
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Elevation 610.0-1644.0m",
 "Geometry POLYGON((-76.04649 5.82837,-75.99565 5.82837,-75.99565 5.8696,-76.04649 5.8696,-76.04649 5.82837))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 59 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009942-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsn79z
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"equals","key":"GADM_LEVEL_2_GID","value":"USA.41.30_1","matchCase":false},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009941-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8gmj95
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-72.03504 -30.50792,-69.69086 -30.32997,-67.14493 -23.82382,-68.02845 -23.35511,-69.24723 -23.2378,-71.20675 -23.25446,-71.12586 -26.61482,-72.03504 -30.50792))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calliandra chilensis",
 "Year 2000-2026"
 ]
}

 The dataset includes 68 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009943-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.