cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/34297063039b58b121c9408f0a7ca790
title: Bird Communities in Fragmented, Non-Native Pine Plantations in the Oak Openings Region of Northwest Ohio

description: Comprehensive surveys, while preferred, are not always feasible due to time, logistical, and funding constraints. However, limited surveys of focal taxa, such as birds, coupled with vegetation surveys, can provide critical information to guide land management. In the 1930s non-native conifers were planted in the Oak Openings Region of northwestern Ohio, a biodiversity hotspot. The stands are declining, and management is needed, but restoration to native habitat is time consuming and expensive. Our research utilized an avian perspective of ecological function of introduced pine plantations versus native remnants to guide management.
 We surveyed bird activity May through July 2020 with point-counts in nine sites (1.3-2.3 ha) with three each of white pine, red pine, and oak forest sites. At each site, we estimated bird richness, abundance, and diversity, as well as structural characteristics (e.g., canopy cover), composition (e.g., vegetation types), and landscape context (e.g., landcover). Superficially, the pine sites appear to be beneficial as pine habitat for breeding birds, with high Simpson’s indices (up to 0.89) and high species richness compared to oak sites. However, our results reveal that the pines are not truly functioning as pine habitat for birds based on the limited occurrence of pine specialist species, proportion of generalists to pine specialists, and landscape context. Simple measures of diversity with no consideration as to species identity and without the environmental context fail to provide reliable measures of ecological value. Instead, we recommend selective sampling and consideration of landscape context, vegetation structure, and species classification to guide management.
DOI: 10.3886/2b4y-c712
title: Ghana Compact - Agriculture - Irrigation: Final Analysis Report
DOI: 10.3886/wbz6-zt44
title: Ghana Compact - Agriculture - Irrigation: Final Analysis Report
DOI: 10.3886/4hkp-ey15
title: Namibia Compact - Regional Study and Resource Center: Final Analysis Report
DOI: 10.3886/22rk-bj92
title: Namibia Compact - Regional Study and Resource Center: Final Analysis Report
DOI: 10.25345/c5542jk5v
title: MassIVE MSV000093730 - Proteins associated with Impaired Acrosomal Exocytosis (IAE) can be identified in sperm from subfertile Thoroughbred stallions by using data-independent acquisition mass spectrometry (DIA-MS)
title: Thoroughbred stallions that carry a double-homozygous genotype A/A-A/A for SNPs rs397316122 and rs69101140 in exon 5 of the FKBP6 gene (chr13; EquCab3.0) are uniquely subfertile due to impaired acrosomal exocytosis (IAE). However, clear causation of this condition has not been determined. In the current study, the sperm proteome in frozen/thawed semen from three fertile TB stallions and three subfertile TB stallions (FKBP6 genotype A/A-A/A) was studied using mass spectrometry-based global proteomics. Sperm from both stallion groups were incubated in Lactate-Modified Whitten's (Lac-MW) medium to induce spontaneous acrosomal exocytosis in viable sperm (AE/Viable). At 0h, 2h, 4h, and 6h, sperm aliquots were removed for analysis for AE/Viable using flow cytometry (Fixable Live/Dead Red + FITC-PSA) global proteomics via data-independent acquisition mass spectrometry (DIA-MS). Student's t-tests and two-way ANOVA with Benjamini-Hochberg multiple testing correction (FDR q-value 0.05) were used to determine differences in AE/Viable and protein relative abundance between experimental groups and incubation periods. At 4h and 6h of incubation, the mean AE/Viable was higher in the fertile than in the subfertile stallions (41 and 44% vs. 14 and 16%, respectively; p &lt; 0.05). A total of 2220 proteins was identified by DIA-MS. Using strict selection criteria (FDR 1.0%, q-value &lt; 0.05, and fold-change &lt; 1.5 or &gt; 1.5), 140 proteins were found to be differentially abundant in sperm from the subfertile stallions when compared to that of the fertile stallions (83 less and 57 more abundant) at 0h incubation. Using bioinformatic analyses, most of the proteins of lower abundance in sperm from subfertile stallions were found to be overrepresented in the "metabolism" (32 proteins) and "metabolism of lipids" (18 proteins) pathways (Homo sapiens orthologs; Reactome database). Two of these proteins, arylsulfatase F (ARSF; log2 fold change = -2.0; p &lt; 0.05) and zona pellucida-binding protein 2 (ZPBP2; log2 fold change = -1.7; p &lt; 0.05), are acrosomal proteins known to play a fundamental role in sperm-oocyte binding. By using immunofluorescence, at 0h of incubation in MW-Lac, ARSF was identified at the acrosome, mid-, and principal piece in sperm from fertile TB stallions, while only at the mid-and principal piece in sperm from subfertile TB stallions. No evidence of ZPBP2 was observed in sperm from both stallion groups at 0h incubation in Lac-MW. Sperm from subfertile Thoroughbred stallions were bound to porcine zonae pellucidae at a lower frequency than sperm from fertile Thoroughbred stallions. In conclusion, DIA-MS is a powerful tool to identify candidate proteins that contribute to the etiology of IAE in Thoroughbred stallions, including proteins of acrosome origin that have a role in the sperm-oocyte binding process.
DOI: 10.5281/zenodo.4010528
title: DGPS and Echosounder data for Glass Window Bridge, Eleuthera, Bahamas.

description: Bathymetric and Differential GPS data collected on Eleuthera, Bahamas as collected by survey instruments. These data are used in Rovere et al., 2017 (PNAS, see references).


Bathymetry: data was acquired with an MX Biosonics Aquatic Habitat Echosounder (Depth accuracy 1.7cm±0.2% of depth; DGPS positional accuracy: <3m, 95%) mounted on a small boat. No tidal correction has been applied. No IMU corrections to take into account wave motion were applied.


GPS: GPS points and lines were measured with a Trimble Pro XRT GPS receiving real-time Omnistar HP corrections (2-sigma 95% accuracy of 10cm). Heights are referred to the ITRF Ellipsoid.


All data is in .shp format.
DOI: 10.5281/zenodo.4010529
title: DGPS and Echosounder data for Glass Window Bridge, Eleuthera, Bahamas.

description: Bathymetric and Differential GPS data collected on Eleuthera, Bahamas as collected by survey instruments. These data are used in Rovere et al., 2017 (PNAS, see references).


Bathymetry: data was acquired with an MX Biosonics Aquatic Habitat Echosounder (Depth accuracy 1.7cm±0.2% of depth; DGPS positional accuracy: <3m, 95%) mounted on a small boat. No tidal correction has been applied. No IMU corrections to take into account wave motion were applied.


GPS: GPS points and lines were measured with a Trimble Pro XRT GPS receiving real-time Omnistar HP corrections (2-sigma 95% accuracy of 10cm). Heights are referred to the ITRF Ellipsoid.


All data is in .shp format.
DOI: 10.34740/kaggle/dsv/7292741
title: Road Accident Casualties
DOI: 10.25919/dvb1-bt55
title: Parkes observations for project P1226 semester 2023OCTS_17

description: Fast Radio Bursts(FRBs) are often proposed as useful cosmological probes, however much work is needed to better understand the foreground environment that it propgates through, such as the Galactic ISM and Milky Way Halo. We propose to observe three satellite dwarf spheroidal galaxies of the Milky Way to search for FRBs and pulsars. We plan to take advantage of the new CryoPAF's wide field of view to survey high stellar density dwarf satellite galaxies with substantial angular sizes: Fornax, Sculptor and Sagittarius II. Detections of FRBs and pulsars will allow us to measure the Circumgalactic Medium contribution to FRB dispersion and also the dark matter halos of these dwarf galaxies.
DOI: 10.25919/s083-6f58
title: Parkes observations for project P1229 semester 2023OCTS_08

description: We propose a pulsar timing campaign of three millisecond pulsars discovered in previous pulsar searches of Fermi gamma-ray sources. Despite an original follow-up effort, it was not possible to produce a pulsar timing solution with which to detect the expected gamma-ray pulsations. The proposed campaign combines a set of dense, initial observations with additional observations at increasing separation, a bootstrap approach which is generally successful at constraining all the fundamental parameters of the pulsar timing solution. Securing the gamma-ray pulsations will enable probes of the radio and gamma-ray emission mechanisms and searches for multi-wavelength counterparts. And perhaps more importantly, it will allow these pulsars to be incorporated into the gamma-ray pulsar timing array, providing additional baselines which will increase its sensitivity to low-frequency gravitational waves.
DOI: 10.25919/rsmh-k465
title: Parkes observations for project P885 semester 2023OCTS_08

description: We request a continued modest monitoring cadence of once every 10 days for two radio magnetars, to track their rotation, flux density, and polarisation. 1E 1547.0-5408 has recently suffered a 'hiccup' in radiative properties as well as in its rotation, and the mid-term response to this event remains unclear. Swift J1818.0-1607 remains quite dynamic, and the unique UWL capabilities provide new opportunities to probe still mysterious radio emission mechanisms in magnetars. We will observe XTE J1810-197 and PSR J1622-4950, which ceased emission a year ago, less frequently. The overall request is 18 hours.
DOI: 10.5281/zenodo.10436714
title: torymus_texanus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436715
title: torymus_texanus_spades_01.fasta.gz

description: .
DOI: 10.3886/j6wq-pc04
title: Namibia Compact - Regional Study and Resource Center: Interim Analysis Report 2
DOI: 10.3886/k66v-g532
title: Namibia Compact - Regional Study and Resource Center: Interim Analysis Report 2
DOI: 10.23645/epacomptox.19096616.v1
title: Dataset for "Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-friendly SMILES Structure-based Approach"

description: This Excel macro file is
associated with the article entitled “Identification of Branched and Linear
Forms of PFOA and Potential Precursors: A User-friendly SMILES Structure-based
Approach” by Ann Richard, Hannah Hidle, Grace Patlewicz and Antony
Williams. Detailed instructions on its use are provided in the first tab
of the file.
DOI: 10.23645/epacomptox.19096616.v2
title: Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-friendly SMILES Structure-based Approach

description: This Excel macro file is
associated with the article entitled “Identification of Branched and Linear
Forms of PFOA and Potential Precursors: A User-friendly SMILES Structure-based
Approach” by Ann Richard, Hannah Hidle, Grace Patlewicz and Antony
Williams. Detailed instructions on its use are provided in the first tab
of the file.
DOI: 10.23645/epacomptox.19096616
title: Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-friendly SMILES Structure-based Approach

description: This Excel macro file is
associated with the article entitled “Identification of Branched and Linear
Forms of PFOA and Potential Precursors: A User-friendly SMILES Structure-based
Approach” by Ann Richard, Hannah Hidle, Grace Patlewicz and Antony
Williams. Detailed instructions on its use are provided in the first tab
of the file.
DOI: 10.3886/adbc-2613
title: Namibia Compact - Regional Study and Resource Center: Interim Analysis Report 1
DOI: 10.3886/hqpd-8y47
title: Namibia Compact - Regional Study and Resource Center: Interim Analysis Report 1
DOI: 10.3886/fn3a-bd70
title: Ghana Compact - Agriculture - Irrigation: Baseline Analysis Report
DOI: 10.3886/shsm-vz23
title: Ghana Compact - Agriculture - Irrigation: Baseline Analysis Report
DOI: 10.5281/zenodo.10436729
title: spinus_psaltria_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436730
title: spinus_psaltria_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436676
title: Patient-specific genome-scale metabolic models reconstructed for 8 TCGA tumor types

description: TCGA_reconstructedGEMs: 3,599 cancer patient-specific GEMs for 8 different tumor types reconstructed using the  TCGA (The Cancer Genome Atlas) RNA-seq data and generic human GEM 'Recon 2M.2'
DOI: 10.5281/zenodo.10436677
title: Patient-specific genome-scale metabolic models reconstructed for 8 TCGA tumor types

description: TCGA_reconstructedGEMs: 3,599 cancer patient-specific GEMs for 8 different tumor types reconstructed using the  TCGA (The Cancer Genome Atlas) RNA-seq data and generic human GEM 'Recon 2M.2'
DOI: 10.6084/m9.figshare.24910749
title: deNido-vs-Calafiore study.xlsx

description: A comparison of the changes of intra-myocardial amino acids following the use of two types of cardioplegic solution in coronary artery bypass surgery; de Nido cardioplegia and Calafiore cardioplegia
DOI: 10.6084/m9.figshare.24910749.v1
title: deNido-vs-Calafiore study.xlsx

description: A comparison of the changes of intra-myocardial amino acids following the use of two types of cardioplegic solution in coronary artery bypass surgery; de Nido cardioplegia and Calafiore cardioplegia
DOI: 10.5281/zenodo.10436763
title: chalinula_nematifera_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436764
title: chalinula_nematifera_spades_01.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/7292935
title: Linkedin Data Engineer Job Postings
DOI: 10.6084/m9.figshare.24910755
title: iucn_threats.csv

description: Decline of apex scavengers threatens human health
DOI: 10.6084/m9.figshare.24910755.v1
title: iucn_threats.csv

description: Decline of apex scavengers threatens human health
DOI: 10.6084/m9.figshare.24910761
title: iucn_habitats.csv

description: Decline of apex scavengers threatens human health
DOI: 10.6084/m9.figshare.24910761.v1
title: iucn_habitats.csv

description: Decline of apex scavengers threatens human health
DOI: 10.6084/m9.figshare.24910764
title: species_list.csv

description: Decline of apex scavengers threatens human health
DOI: 10.6084/m9.figshare.24910764.v1
title: species_list.csv

description: Decline of apex scavengers threatens human health
DOI: 10.5281/zenodo.10407499
title: R workspace: A scalable and transferable approach to combining emerging conservation technologies to identify biodiversity change after large disturbances

description: R workspace and associated code used in the the manuscript 'A scalable and transferable approach to combining emerging conservation technologies to identify biodiversity change after large disturbances'
DOI: 10.5281/zenodo.10407500
title: R workspace: A scalable and transferable approach to combining emerging conservation technologies to identify biodiversity change after large disturbances

description: R workspace and associated code used in the the manuscript 'A scalable and transferable approach to combining emerging conservation technologies to identify biodiversity change after large disturbances'
DOI: 10.5281/zenodo.10436795
title: acanthis_flammea_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436796
title: acanthis_flammea_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10436694
title: Data to prepare the criticality index

description: The dataset is the complete dataset required to recreate the criticality index
DOI: 10.5281/zenodo.10436695
title: Data to prepare the criticality index

description: The dataset is the complete dataset required to recreate the criticality index
DOI: 10.15472/c9cowq
title: Biodiversidad sensible de la parte alta (páramo) de la OMEC potencial Ecolectivo Nevados: Corredor Socioambiental

description: La presente lista de chequeo muestra 36 registros biológicos de fauna y flora sensibles (amenazados, con distribución restringida o endémicos), identificados a partir de la revisión de información secundaria basada en el ecosistema de páramo, bases de datos, artículos científicos y registros de observaciones (eBird) en el área de influencia del paisaje de la OMEC y de los municipios de Murillo y Villahermosa. Se filtró la información basada en endemismos y en las categorías de amenaza a nivel global y nacional de las especies que se pueden encontrar en el área de la OMEC potencial Ecolectivo Nevados: Corredor Socioambiental, con énfasis en la zona de páramo de los municipios de Villahermosa y Murillo, departamento del Tolima
DOI: 10.34740/kaggle/dsv/7293073
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.5066/p971lpob
title: MODFLOW 6 models for simulating groundwater flow in the Mississippi Embayment with a focus on the Mississippi Delta

description: This model archive contains the model files for the MERAS 3 and Mississippi Delta groundwater flow models documented in the U.S. Geological Survey Scientific Investigations Report 2023-5100. The MERAS 3 model provides a simplified representation of groundwater flow in the Mississippi Embayment Regional Aquifer Study (MERAS) area for the period of 1900 through 2018, with the primary goal of providing boundary fluxes for inset models focused on local areas of interest. The Mississippi Delta model simulates groundwater flow in the Delta region of northwestern Mississippi from 1900 through 2018, using boundary fluxes from the MERAS 3 model. A scenario version of the Mississippi Delta model extends the simulation to 2056, using net infiltration, surface water runoff, and irrigation pumping derived from downscaled general circulation model output, via a soil water balance simulation. Workflows for initial model construction, parameter estimation, and the setup of future climate scenarios are included in separate ZIP archives, along with portable python distributions for running the workflow scripts on OSX or Windows platforms. See the Readme.md file(s) for instructions.
DOI: 10.34740/kaggle/dsv/7293077
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.22002/h2xd4-zbd29
title: Data accompanying "Elevation anomalies of the volcanic floor unit and their relationships to the multiple lakes of Jezero crater, Mars."

description: This data accompanies "Elevation anomalies of the volcanic floor unit and their relationships to the multiple lakes of Jezero crater, Mars." Annex & Ehlmann, GRL, 2023.
Included are several GeoPackage (.gpkg) files containing vector GIS map layers for cross sections, elevation profile measurements, surface fit points, and surface fit boundaries.
.TIF and .VRT files correspond to various HiRISE and CTX DEMs, orthomosaic products, detrended elevation data, and relative topographic position data. 
A Jupyter notebook file (detrend_topo_procedure.ipynb) contains the code for performing the ordinary least squares regression of the elevation data.
The original CTX DEM and orthomap was sourced from Mangold et al., 2021, Perseverance rover reveals an ancient delta-lake system and flood deposits at Jezero crater, Mars, Science. https://doi.org/10.1126/science.abl4051. Both products are available at https://astrogeology.usgs.gov/search/map/Mars/Mars2020/Jez_MARS2020_CTX_DEM_Science_Mosaic, specifically the DEM: https://planetarymaps.usgs.gov/mosaic/mars2020_trn/CTX/ScienceInvestigationMaps_JPL/M20_JezeroCrater_CTXDEM_20m.tif and orthomap: https://astropedia.astrogeology.usgs.gov/download/Mars/Mars2020/ancillary/M20_JezeroCrater_CTXortho_mosaic_5m.tif
A relate HiRISE DEM and orthomap for the Jezero western fan and landing site was sourced from Fergason, R. L., Hare, T. M., Mayer, D. P., Galuszka, D. M., Redding, B. L., Smith, E. D., Shinaman, J. R., Cheng, Y., Otero, R. E., 2020, Mars 2020 Terrain Relative Navigation Flight Product Generation: Digital Terrain Model and Orthorectified Image Mosaics, 51st Lunar and Planetary Science Conference, URL: https://www.hou.usra.edu/meetings/lpsc2020/pdf/2020.pdf.
The HiRISE DEM is available at https://astrogeology.usgs.gov/search/map/Mars/Mars2020/JEZ_hirise_soc_006_DTM_MOLAtopography_DeltaGeoid_1m_Eqc_latTs0_lon0_blend40 and the orthomap is available at https://astrogeology.usgs.gov/search/map/Mars/Mars2020/JEZ_hirise_soc_006_orthoMosaic_25cm_Eqc_latTs0_lon0_first
DOI: 10.34740/kaggle/dsv/7293102
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.5281/zenodo.10436488
title: "Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks": Dataset

description: This repository contains the data accompanying the paper "Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks", by Francesco Regazzoni, Stefano Pagani, Matteo Salvador, Luca Dedè and Alfio Quarteroni.

 

The associated codes are available in the Github repository https://github.com/FrancescoRegazzoni/LDNets
DOI: 10.5281/zenodo.10436489
title: "Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks": Dataset

description: This repository contains the data accompanying the paper "Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks", by Francesco Regazzoni, Stefano Pagani, Matteo Salvador, Luca Dedè and Alfio Quarteroni.

 

The associated codes are available in the Github repository https://github.com/FrancescoRegazzoni/LDNets
DOI: 10.6084/m9.figshare.24910902
title: The serial bounding algorithm with the accuracy of the reliability bound γ = 0

description: Reliabilities and running times of the serial bounding algorithm [19] with the accuracy of the reliability bound γ = 0
DOI: 10.6084/m9.figshare.24910902.v1
title: The serial bounding algorithm with the accuracy of the reliability bound γ = 0

description: Reliabilities and running times of the serial bounding algorithm [19] with the accuracy of the reliability bound γ = 0
DOI: 10.34740/kaggle/dsv/7293130
title: Full TMDB Movies Dataset 2023 (930K Movies)
DOI: 10.5281/zenodo.10436826
title: Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks: dataset

description: This repository contains the data accompanying the paper "Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks", by Francesco Regazzoni, Stefano Pagani, Matteo Salvador, Luca Dedè and Alfio Quarteroni.

The associated codes are available in the repository https://github.com/FrancescoRegazzoni/LDNets
DOI: 10.5281/zenodo.10436827
title: Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks: dataset

description: This repository contains the data accompanying the paper "Learning the intrinsic dynamics of spatio-temporal processes through Latent Dynamics Networks", by Francesco Regazzoni, Stefano Pagani, Matteo Salvador, Luca Dedè and Alfio Quarteroni.

The associated codes are available in the repository https://github.com/FrancescoRegazzoni/LDNets
DOI: 10.5517/ccdc.csd.cc220gn7
title: CCDC 1907078: Experimental Crystal Structure Determination

description: Related Article: Dávid Földes, Éva Kováts, Gábor Bortel, Emma Jakab, Sándor Pekker|2019|Period.Polytech.Chem.Eng.|63|365|doi:10.3311/PPch.13075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10435782
title: Midway RSS-related files backup (Data, rbc2012)
DOI: 10.5281/zenodo.10435783
title: Midway RSS-related files backup (Data, rbc2012)
DOI: 10.6084/m9.figshare.24910938.v1
title: DATA for study of moderation of relatioonships between dysfunctional sleep and positive and negagtive affecf by sex and profession

description: Data was used in analysis for study of moderation effects of dysfunctional sleep's effects on negative and positive affect by sex and profession