cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4880756.v1
title: Dataset for: A generalized partially linear mean-covariance regression model for longitudinal proportional data, with applications to the analysis of quality of life data from cancer clinical trials

description: Motivated by the analysis of quality of life data from a clinical trial on early breast cancer, we propose in this paper a generalized partially linear mean-covariance regression model for longitudinal proportional data which are bounded in a closed interval. Cholesky decomposition of the covariance matrix for within-subject responses and generalized estimation equations are used to estimate unknown parameters and the nonlinear function in the model. Simulation studies are performed to evaluate the performance of the proposed estimation procedures. Our new model is also applied to analyze the data from the cancer clinical trial which motivated this study. In comparison with available models in the literature, the proposed model does not require specific parametric assumptions on the density function of the longitudinal responses and the probability function of the boundary values and can capture dynamic changes of time or other interested variables on both mean and covariance of the correlated responses.
DOI: 10.6084/m9.figshare.4880693
title: Dataset: The tick biocontrol agent Metarhizium brunneum (= M. anisopliae) (strain F52) does not reduce the abundance of non-target arthropods in a suburban landscape

description: For full description of methods, please see: Fischhoff, I. R., F. Keesing and R. S. Ostfeld (2017). "The tick biocontrol agent Metarhizium brunneum (= M. anisopliae) (strain F52) does not reduce the abundance of non-target arthropods in a suburban landscape." PLOS ONE: 1-15. https://doi.org/10.1371/journal.pone.0187675
DOI: 10.15131/shef.data.4880660
title: Data for paper "Linear + Linear = Chaos"

description: Proceedings of the Royal Society A [forthcoming]<br><br>Text files contain the data which was used to generate the Figures for the paper using MATLAB. Each text file explains how the data were generated.<br>
DOI: 10.6084/m9.figshare.4880693.v1
title: Dataset: The tick biocontrol agent Metarhizium brunneum (= M. anisopliae) (strain F52) does not reduce the abundance of non-target arthropods in a suburban landscape

description: For full description of methods, please see: [citation for published article]<br>
DOI: 10.15131/shef.data.4880660.v1
title: Data for paper "Linear + Linear = Chaos"

description: Proceedings of the Royal Society A [forthcoming]<br><br>Text files contain the data which was used to generate the Figures for the paper using MATLAB. Each text file explains how the data were generated.<br>
DOI: 10.6084/m9.figshare.4880657
title: Latitudinal gradient in insect immunity

description: Among-population differences of two parameters reflecting constitutive immunity – phenoloxidase (PO) and lytic activity – using common garden design on three distantly related moth species represented by populations ranging from northern Finland to Georgia (Caucasus). <br>
DOI: 10.6084/m9.figshare.4880693.v3
title: Dataset: The tick biocontrol agent Metarhizium brunneum (= M. anisopliae) (strain F52) does not reduce the abundance of non-target arthropods in a suburban landscape

description: For full description of methods, please see: Fischhoff, I. R., F. Keesing and R. S. Ostfeld (2017). "The tick biocontrol agent Metarhizium brunneum (= M. anisopliae) (strain F52) does not reduce the abundance of non-target arthropods in a suburban landscape." PLOS ONE: 1-15. https://doi.org/10.1371/journal.pone.0187675
DOI: 10.6084/m9.figshare.4880693.v2
title: Dataset: The tick biocontrol agent Metarhizium brunneum (= M. anisopliae) (strain F52) does not reduce the abundance of non-target arthropods in a suburban landscape

description: For full description of methods, please see: [citation for published article]<br>
DOI: 10.6084/m9.figshare.4880570
title: Analysis of m6A-Seq

description: This data contains analysis of previously published m6A-Seq data that was GEO-deposited (GSE37005).
DOI: 10.6084/m9.figshare.4880549
title: KF-2237_T_fossilibus_holotype_ventr_40x_NikonD7000

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.<br><br><br>
DOI: 10.6084/m9.figshare.4880504
title: KF-2237_T_fossilibus_holotype_dors_40x_NikonD7000

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.<br><br>
DOI: 10.6084/m9.figshare.4880570.v1
title: Analysis of m6A-Seq

description: This data contains analysis of previously published m6A-Seq data that was GEO-deposited (GSE37005).
DOI: 10.6084/m9.figshare.4880501
title: Lifestyle intervention for adults with spinal cord injury: Results of the USC–RLANRC Pressure Ulcer Prevention Study

description: <b>Context/Objective</b>: Medically serious pressure injuries (MSPrIs), a common complication of spinal cord injury (SCI), have devastating consequences on health and well-being and are extremely expensive to treat. We aimed to test the efficacy of a lifestyle-based intervention designed to reduce incidence of MSPrIs in adults with SCI. <b>Design</b>: A randomized controlled trial (RCT), and a separate study wing involving a nonrandomized standard care control group. <b>Setting</b>: Rancho Los Amigos National Rehabilitation Center, a large facility serving ethnically diverse, low income residents of Los Angeles County. <b>Participants</b>: Adults with SCI, with history of one or more MSPrIs over the past 5 years: N=166 for RCT component, N=66 in nonrandomized control group. <b>Interventions</b>: The Pressure Ulcer Prevention Program, a 12-month lifestyle-based treatment administered by healthcare professionals, largely via in-home visits and phone contacts. <b>Outcome Measures</b>: Blinded assessments of annualized MSPrI incidence rates at 12 and 24 months, based on: skin checks, quarterly phone interviews with participants, and review of medical charts and billing records. Secondary outcomes included number of surgeries and various quality-of-life measures. <b>Results</b>: Annualized MSPrI rates did not differ significantly between study groups. At 12 months, rates were .56 for intervention recipients, .48 for randomized controls, and .65 for nonrandomized controls. At follow-up, rates were .44 and .39 respectively for randomized intervention and control participants. <b>Conclusions</b>: Evidence for intervention efficacy was inconclusive. The intractable nature of MSPrI threat in high-risk SCI populations, and lack of statistical power, may have contributed to this inability to detect an effect. <b>Trial Registration</b>: ClinicalTrials.gov NCT01999816
DOI: 10.6084/m9.figshare.4880549.v1
title: KF-2237_T_fossilibus_holotype_ventr_40x_NikonD7000

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.<br><br><br>
DOI: 10.6084/m9.figshare.4880504.v1
title: KF-2237_T_fossilibus_holotype_dors_40x_NikonD7000

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.<br><br>
DOI: 10.6084/m9.figshare.4880471
title: K-2237_T_fossilibus_holotype_dors40xZeiss_p2

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.
DOI: 10.6084/m9.figshare.4880501.v2
title: Lifestyle intervention for adults with spinal cord injury: Results of the USC–RLANRC Pressure Ulcer Prevention Study

description: <b>Context/Objective</b>: Medically serious pressure injuries (MSPrIs), a common complication of spinal cord injury (SCI), have devastating consequences on health and well-being and are extremely expensive to treat. We aimed to test the efficacy of a lifestyle-based intervention designed to reduce incidence of MSPrIs in adults with SCI. <b>Design</b>: A randomized controlled trial (RCT), and a separate study wing involving a nonrandomized standard care control group. <b>Setting</b>: Rancho Los Amigos National Rehabilitation Center, a large facility serving ethnically diverse, low income residents of Los Angeles County. <b>Participants</b>: Adults with SCI, with history of one or more MSPrIs over the past 5 years: N=166 for RCT component, N=66 in nonrandomized control group. <b>Interventions</b>: The Pressure Ulcer Prevention Program, a 12-month lifestyle-based treatment administered by healthcare professionals, largely via in-home visits and phone contacts. <b>Outcome Measures</b>: Blinded assessments of annualized MSPrI incidence rates at 12 and 24 months, based on: skin checks, quarterly phone interviews with participants, and review of medical charts and billing records. Secondary outcomes included number of surgeries and various quality-of-life measures. <b>Results</b>: Annualized MSPrI rates did not differ significantly between study groups. At 12 months, rates were .56 for intervention recipients, .48 for randomized controls, and .65 for nonrandomized controls. At follow-up, rates were .44 and .39 respectively for randomized intervention and control participants. <b>Conclusions</b>: Evidence for intervention efficacy was inconclusive. The intractable nature of MSPrI threat in high-risk SCI populations, and lack of statistical power, may have contributed to this inability to detect an effect. <b>Trial Registration</b>: ClinicalTrials.gov NCT01999816
DOI: 10.6084/m9.figshare.4880432
title: Pulmonary exposure to metallic nanomaterials during pregnancy irreversibly impairs lung development of the offspring

description: Due to the growing commercial applications of manufactured nanoparticles (NPs), toxicological studies on NPs, especially during the critical window of development, are of major importance. The aim of the study was to assess the impact of respiratory exposure to metallic and metal oxide NPs during pregnancy on lung development of the offspring and to determine the key parameters involved in lung alterations. Pregnant mice were exposed to weekly doses of 100 μg (total dose 300 μg) of titanium dioxide (TiO<sub>2</sub>), cerium oxide (CeO<sub>2</sub>), silver (Ag) NPs or saline solution by nonsurgical intratracheal instillation. The offspring lungs were analyzed at different stages of lung development: fetal stage (gestational day 17.5), pulmonary alveolarization (post-delivery day 14.5) and lung maturity (post-delivery day 49.5). Regardless of the type of NP, maternal exposure during gestation induced long-lasting impairment of lung development of the offspring. This effect was accompanied by: i) decreased placental efficiency together with the presence of NPs in placenta, ii) no increase of inflammatory mediators present in amniotic fluid, placenta or offspring lungs and iii) decreased pulmonary expression of vascular endothelial growth factor-α (VEGF-α) and matrix metalloproteinase 9 (MMP-9) at the fetal stage, and fibroblast growth factor-18 (FGF-18) at the alveolarization stage. Respiratory exposure to metallic NPs during pregnancy induces stereotyped impairment of lung development with a lasting effect in adult mice, independently of the chemical nature of the NP.
DOI: 10.6084/m9.figshare.4880402
title: Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress - Experimental data file

description: Experimental data file for DMSP, DMSO, FV/FM, Chlorophyll a fluorescence and ROS fluorescence
DOI: 10.6084/m9.figshare.4880405
title: K-2237_T_fossilibus_holotype_dors40xZeiss_p1

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.
DOI: 10.6084/m9.figshare.4880471.v1
title: K-2237_T_fossilibus_holotype_dors40xZeiss_p2

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.
DOI: 10.6084/m9.figshare.4880501.v1
title: Lifestyle intervention for adults with spinal cord injury: Results of the USC–RLANRC Pressure Ulcer Prevention Study

description: <b>Context/Objective</b>: Medically serious pressure injuries (MSPrIs), a common complication of spinal cord injury (SCI), have devastating consequences on health and well-being and are extremely expensive to treat. We aimed to test the efficacy of a lifestyle-based intervention designed to reduce incidence of MSPrIs in adults with SCI. <b>Design</b>: A randomized controlled trial (RCT), and a separate study wing involving a nonrandomized standard care control group. <b>Setting</b>: Rancho Los Amigos National Rehabilitation Center, a large facility serving ethnically diverse, low income residents of Los Angeles County. <b>Participants</b>: Adults with SCI, with history of one or more MSPrIs over the past 5 years: N=166 for RCT component, N=66 in nonrandomized control group. <b>Interventions</b>: The Pressure Ulcer Prevention Program, a 12-month lifestyle-based treatment administered by healthcare professionals, largely via in-home visits and phone contacts. <b>Outcome Measures</b>: Blinded assessments of annualized MSPrI incidence rates at 12 and 24 months, based on: skin checks, quarterly phone interviews with participants, and review of medical charts and billing records. Secondary outcomes included number of surgeries and various quality-of-life measures. <b>Results</b>: Annualized MSPrI rates did not differ significantly between study groups. At 12 months, rates were .56 for intervention recipients, .48 for randomized controls, and .65 for nonrandomized controls. At follow-up, rates were .44 and .39 respectively for randomized intervention and control participants. <b>Conclusions</b>: Evidence for intervention efficacy was inconclusive. The intractable nature of MSPrI threat in high-risk SCI populations, and lack of statistical power, may have contributed to this inability to detect an effect. <b>Trial Registration</b>: ClinicalTrials.gov NCT01999816
DOI: 10.6084/m9.figshare.4880399
title: K-2237_T_fossilibus_holotype_ventr40xZeiss_p1

description: Original image stacks and layered images of the holotype specimens of fossil Acari: Trombidiformes: Tetranychoidea: Tuckerellidae: (1) Tuckerella fossilibus Khaustov, Sergeyenko & Perkovsky, 2014, deutonymph, ength of idiosoma – 245 μm, width – 165 μm, specimen deposited in I.I. Schmalhausen Institute of Zoology, National Academy of Science, Kiev (SIZK), collection number KF-2237; (2) new species of Tuckerella, Female. Length of idiosoma – 274, width – 155, height – 55 μm, originates from collection of Mr. Thomas Weiterschan (TW), original number TW 1288, and is transferred to the collection of the Geological-Paleontological Museum and University Hamburg (GPIH).<br>Image stacks were obtained with Zeiss AxioImager A2 compound microscope with dry lenses and differential interference contrast (DIC) illumination with AxioCam 506 color digital camera. Bright field and polarized light micrographs were obtained with Nikon Eclipse 800 microscope with 60x water immersion lens, Nikon DS-Fi1 and Nikon D7000 digital cameras. All images were corrected for light, color, noise and sharpness using Adobe Lightroom, then processed with Helicon Focus algorithm A, always with some detail manually transferred from the individual focal planes to the resulting images. These images are further referred to as "comb" in the file names.