cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10053323
title: Specular Reflection FTIR: A Non-Contact Method for Analyzing Coatings on Photographs and Other Cultural Materials

description: Cultural heritage objects present a special set of challenges to analyze chemically. Often micro-sampling or even contacting the object is not appropriate or deemed too risky for fragile surfaces. Fourier Transform Infrared (FTIR) spectroscopy is a commonly used analytical technique for organic compound identification, either in a micro-sampling or Attenuated Total Reflection (ATR) mode, both of which inherently require some measure of contact with the sample. Presented here is a case study of the use of specular reflection FTIR spectroscopy, an FTIR collection mode that allows positive chemical identifications in a <i>non-sampling</i> and <i>non-contact</i> way. Although this paper focuses on the case study of coatings on 19th century photographs, the specular reflection FTIR mode is applicable to surface coatings on any artifact where molecular composition identification is needed but micro-sampling or physical contact with the sample have been ruled out. The main limitation of the specular reflection mode has traditionally been the lack of specular reflection FTIR reference libraries. As a result, the analytical project presented here first required generation of a specular reflection FTIR spectral library for historical coating materials used on 19th century prints by creating modern reference samples. The project is a result of collaboration between conservators at the Weissman Preservation Center at Harvard Library and materials scientists at Harvard’s Center for Nanoscale Systems to analyze original coatings on 19th century salted paper photographs in the collection of the Harvard University Archives.
DOI: 10.6084/m9.figshare.10053314
title: Raw data file of great ape foramina measurements from Cerebral blood flow rates in recent great apes are greater than in <i>Australopithecus</i> species that had equal or larger brains

description: Excel file of all specimens used in the study and their data
DOI: 10.6084/m9.figshare.10053323.v1
title: Specular Reflection FTIR: A Non-Contact Method for Analyzing Coatings on Photographs and Other Cultural Materials

description: Cultural heritage objects present a special set of challenges to analyze chemically. Often micro-sampling or even contacting the object is not appropriate or deemed too risky for fragile surfaces. Fourier Transform Infrared (FTIR) spectroscopy is a commonly used analytical technique for organic compound identification, either in a micro-sampling or Attenuated Total Reflection (ATR) mode, both of which inherently require some measure of contact with the sample. Presented here is a case study of the use of specular reflection FTIR spectroscopy, an FTIR collection mode that allows positive chemical identifications in a <i>non-sampling</i> and <i>non-contact</i> way. Although this paper focuses on the case study of coatings on 19th century photographs, the specular reflection FTIR mode is applicable to surface coatings on any artifact where molecular composition identification is needed but micro-sampling or physical contact with the sample have been ruled out. The main limitation of the specular reflection mode has traditionally been the lack of specular reflection FTIR reference libraries. As a result, the analytical project presented here first required generation of a specular reflection FTIR spectral library for historical coating materials used on 19th century prints by creating modern reference samples. The project is a result of collaboration between conservators at the Weissman Preservation Center at Harvard Library and materials scientists at Harvard’s Center for Nanoscale Systems to analyze original coatings on 19th century salted paper photographs in the collection of the Harvard University Archives.
DOI: 10.6084/m9.figshare.12746510
title: Emys orbicularis Behavioral Data

description: Raw data used to perform the analyses of the paper:<br>Masin, S.; Bani, L.; Vardanega, D.; Chiodini, N.; Orioli, V. Hierarchies and Dominance Behaviors in European Pond Turtle (<i>Emys orbicularis galloitalica</i>) Hatchlings in a Controlled Environment. Animals 2020, 10, 1510.<br><br>Dyadic interactions of 16 hatchlings of the European Pond Turtle, divided in three separate rearing units. Observations were collected daily (no weekends or holidays) from November 2017 to June 2018 for 5 minutes, after food supply. Daily biometries of the hatchlings. Straight Carapace Length was measured twice by two independent observers using a caliper, while Weight was measured once by an electronic scale.<br>
DOI: 10.6084/m9.figshare.12746510.v1
title: Emys orbicularis Behavioral Data

description: Raw data used to perform the analyses of the paper:<br>Masin, S.; Bani, L.; Vardanega, D.; Chiodini, N.; Orioli, V. Hierarchies and Dominance Behaviors in European Pond Turtle (<i>Emys orbicularis galloitalica</i>) Hatchlings in a Controlled Environment. Animals 2020, 10, 1510.<br><br>Dyadic interactions of 16 hatchlings of the European Pond Turtle, divided in three separate rearing units. Observations were collected daily (no weekends or holidays) from November 2017 to June 2018 for 5 minutes, after food supply. Daily biometries of the hatchlings. Straight Carapace Length was measured twice by two independent observers using a caliper, while Weight was measured once by an electronic scale.<br>
DOI: 10.6084/m9.figshare.10053299
title: Morphometric data and microsatellite profiles of 68 donkeys from 3 localities from Serbia (central Balkans) belonging to 2 donkey breeds, Banat donkey and Balkan donkey, and their hybrids

description: Morphometric data for 18 body measurements (given in cm and kg) and microsatellite profiles (11 microsatellites from the Equine Genotype Panel 1.1 recommended by the International Society for Animal Genetics (ISAG) for equine parentage and identification testing) are given for 68 donkey individuals from 3 populations from Serbia (central Balkans) belonging to 2 donkey breeds, Banat donkey and Balkan donkey, and their hybrids
DOI: 10.6084/m9.figshare.10053290
title: rawdata.csv

description: This is the runoff data of Lanzhou station (1967-2005). Please email xinzheng.me@foxmail.com if you want use it.
DOI: 10.6084/m9.figshare.10053299.v1
title: Morphometric data and microsatellite profiles of 68 donkeys from 3 localities from Serbia (central Balkans) belonging to 2 donkey breeds, Banat donkey and Balkan donkey, and their hybrids

description: Morphometric data for 18 body measurements (given in cm and kg) and microsatellite profiles (11 microsatellites from the Equine Genotype Panel 1.1 recommended by the International Society for Animal Genetics (ISAG) for equine parentage and identification testing) are given for 68 donkey individuals from 3 populations from Serbia (central Balkans) belonging to 2 donkey breeds, Banat donkey and Balkan donkey, and their hybrids
DOI: 10.6084/m9.figshare.10053290.v1
title: rawdata.csv

description: This is the runoff data of Lanzhou station (1967-2005). Please email xinzheng.me@foxmail.com if you want use it.
DOI: 10.6084/m9.figshare.10053143
title: Covariates list for generating DTB100 of China

description: This is a list of environmental covariates for generating depth-to-bedrock map of China at a spatial resolution of 100 meters. covariates code, title, description, resolution, citation url and publication date are given in corresponding column. The 'RF', 'GBT', 'QRF' clunmns seperately represent whether the covariate is used by random forest model, gradient boosting tree model and quantitle regression forest model(1 stand for it is used, 0 is not).
DOI: 10.6084/m9.figshare.10053254
title: Bundaroo Data

description: data from field sampling at Bundaroo creek
DOI: 10.6084/m9.figshare.10053254.v1
title: Bundaroo Data

description: data from field sampling at Bundaroo creek
DOI: 10.6084/m9.figshare.10053041
title: MOESM6 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 6: Contains Table S5. Selective expression profiles for union of modules based on strength of epilepsy association (Classes 1, 2, and 3 as C1, C2, and C3, respectively), including: Cell-type specific Expression Analyses (CSEA), Specific Expression Analyses (SEA) for adult brain regions and development, and Tissue-Specific Expression Analyses (TSEA).
DOI: 10.6084/m9.figshare.10053041.v1
title: MOESM6 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 6: Contains Table S5. Selective expression profiles for union of modules based on strength of epilepsy association (Classes 1, 2, and 3 as C1, C2, and C3, respectively), including: Cell-type specific Expression Analyses (CSEA), Specific Expression Analyses (SEA) for adult brain regions and development, and Tissue-Specific Expression Analyses (TSEA).
DOI: 10.6084/m9.figshare.10053023
title: MOESM4 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 4: Table S2a. Similar to Additional file 2: Table S2, Additional file 4: Table S2a displays a summary of analyses performed per module while requiring a CADD score greater than 15 for missense variants.
DOI: 10.6084/m9.figshare.10053032
title: MOESM5 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 5: Table S4. Significant GO terms, KEGG, and Reactome pathway enrichments, and OMIM disease terms per module (p-value &lt; 0.05).
DOI: 10.6084/m9.figshare.10053023.v1
title: MOESM4 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 4: Table S2a. Similar to Additional file 2: Table S2, Additional file 4: Table S2a displays a summary of analyses performed per module while requiring a CADD score greater than 15 for missense variants.
DOI: 10.6084/m9.figshare.10053032.v1
title: MOESM5 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 5: Table S4. Significant GO terms, KEGG, and Reactome pathway enrichments, and OMIM disease terms per module (p-value &lt; 0.05).
DOI: 10.6084/m9.figshare.10053014
title: MOESM3 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 3: Table S3. Proportions of synonymous mutations in neurodevelopmental cases relative to controls. Tabs correspond to modules and respective total number of synonymous de novo variants.
DOI: 10.6084/m9.figshare.10053014.v1
title: MOESM3 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 3: Table S3. Proportions of synonymous mutations in neurodevelopmental cases relative to controls. Tabs correspond to modules and respective total number of synonymous de novo variants.
DOI: 10.6084/m9.figshare.10053005
title: MOESM2 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 2: Table S2. Summary of analyses performed per module, including determinations of enrichment of de novo mutation, overlap with coding copy number variations. Module membership and frequency of occurrence for all genes selected in any module are displayed in the ‘modules’ tab. Number of cases and controls for ASD, ID, DD, and epilepsy cohorts within denovo-db are displayed in the ‘denovo-db’ tab. Contingency tables for Fisher’s exact test were constructed to assess the enrichment of de novo mutation and copy number variations in modules. Contingency table permutation empirical p-values are displayed in the ‘contingency permutations’ tab. Percent contribution to neurodevelopmental disorder diagnoses and comparison of average number of mutations per individual are displayed in the ‘enrichment (union)’ tab. Tabs corresponding to a module name show the total number of de novo variants, associated phenotype, type of variant, and neurodevelopmental disorder-related descriptions per module.
DOI: 10.6084/m9.figshare.10053005.v1
title: MOESM2 of Dissecting the genetic basis of comorbid epilepsy phenotypes in neurodevelopmental disorders

description: Additional file 2: Table S2. Summary of analyses performed per module, including determinations of enrichment of de novo mutation, overlap with coding copy number variations. Module membership and frequency of occurrence for all genes selected in any module are displayed in the ‘modules’ tab. Number of cases and controls for ASD, ID, DD, and epilepsy cohorts within denovo-db are displayed in the ‘denovo-db’ tab. Contingency tables for Fisher’s exact test were constructed to assess the enrichment of de novo mutation and copy number variations in modules. Contingency table permutation empirical p-values are displayed in the ‘contingency permutations’ tab. Percent contribution to neurodevelopmental disorder diagnoses and comparison of average number of mutations per individual are displayed in the ‘enrichment (union)’ tab. Tabs corresponding to a module name show the total number of de novo variants, associated phenotype, type of variant, and neurodevelopmental disorder-related descriptions per module.
DOI: 10.6084/m9.figshare.10052981
title: Additional file 2 of GenGraph: a python module for the simple generation and manipulation of genome graphs

description: Genome graph containing five MTB genomes. The graph was created from the assemblies of six MTB isolates (Beijing, C, CDC1551, F11, H37Ra, H37Rv) from GenBank, and saved in GraphML format. This file is viewable in Cytoscape and may be imported using Pythonâ s NetworkX package.
DOI: 10.6084/m9.figshare.10052972
title: Additional file 1 of GenGraph: a python module for the simple generation and manipulation of genome graphs

description: Example report file for the genome graph created by GenGraph. The report file is in.txt format and contains details of the generated genome graph.
DOI: 10.6084/m9.figshare.10052972.v1
title: Additional file 1 of GenGraph: a python module for the simple generation and manipulation of genome graphs

description: Example report file for the genome graph created by GenGraph. The report file is in.txt format and contains details of the generated genome graph.
DOI: 10.6084/m9.figshare.10052981.v1
title: Additional file 2 of GenGraph: a python module for the simple generation and manipulation of genome graphs

description: Genome graph containing five MTB genomes. The graph was created from the assemblies of six MTB isolates (Beijing, C, CDC1551, F11, H37Ra, H37Rv) from GenBank, and saved in GraphML format. This file is viewable in Cytoscape and may be imported using Pythonâ s NetworkX package.
DOI: 10.6084/m9.figshare.10052954
title: MOESM2 of HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases

description: Additional file 2. Functional enrichment analysis of pleiotropy score after applying polygenicity correction. The equivalent of Table 1 using the LD/polygenicity-corrected scores ( P m P $$ {P}_m^P $$ and P n P $$ {P}_n^P $$ ) instead of the LD-corrected scores ( P m LD $$ {P}_m^{LD} $$ and P n LD $$ {P}_n^{LD} $$ ).
DOI: 10.6084/m9.figshare.10052960
title: MOESM3 of HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases

description: Additional file 3. DAVID enrichment analysis of high-pleiotropy genes. (XLSX 644 kb)
DOI: 10.6084/m9.figshare.10052954.v1
title: MOESM2 of HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases

description: Additional file 2. Functional enrichment analysis of pleiotropy score after applying polygenicity correction. The equivalent of Table 1 using the LD/polygenicity-corrected scores ( P m P $$ {P}_m^P $$ and P n P $$ {P}_n^P $$ ) instead of the LD-corrected scores ( P m LD $$ {P}_m^{LD} $$ and P n LD $$ {P}_n^{LD} $$ ).
DOI: 10.6084/m9.figshare.10052960.v1
title: MOESM3 of HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases

description: Additional file 3. DAVID enrichment analysis of high-pleiotropy genes. (XLSX 644 kb)
DOI: 10.6084/m9.figshare.10052912
title: MOESM2 of Comparison of glenohumeral joint rotation between asymptomatic subjects and patients with subacromial impingement syndrome using cine-magnetic resonance imaging: a cross-sectional study

description: Additional file 2. Available data of this study. This excel file included the data of asymptomatic subjects and patients after propensity score matching.
DOI: 10.6084/m9.figshare.10052912.v1
title: MOESM2 of Comparison of glenohumeral joint rotation between asymptomatic subjects and patients with subacromial impingement syndrome using cine-magnetic resonance imaging: a cross-sectional study

description: Additional file 2. Available data of this study. This excel file included the data of asymptomatic subjects and patients after propensity score matching.
DOI: 10.6084/m9.figshare.10052867
title: MOESM3 of 7C:Â Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

description: Additional file 3: Table S3. Accession numbers and download URLs for data sets used in data type comparisons.
DOI: 10.6084/m9.figshare.10052867.v1
title: MOESM3 of 7C:Â Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

description: Additional file 3: Table S3. Accession numbers and download URLs for data sets used in data type comparisons.
DOI: 10.6084/m9.figshare.10052855
title: MOESM1 of 7C:Â Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

description: Additional file 1: Table S1. Metadata of ChIP-seq experiments from ENCODE in human GM12878 cells with accession ID and download link.
DOI: 10.6084/m9.figshare.10052861
title: MOESM2 of 7C:Â Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

description: Additional file 2: Table S2. Metadata of ChIP-seq experiments from ENCODE human HeLa cells with accession ID and download link.
DOI: 10.6084/m9.figshare.10052855.v1
title: MOESM1 of 7C:Â Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

description: Additional file 1: Table S1. Metadata of ChIP-seq experiments from ENCODE in human GM12878 cells with accession ID and download link.
DOI: 10.6084/m9.figshare.10052861.v1
title: MOESM2 of 7C:Â Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

description: Additional file 2: Table S2. Metadata of ChIP-seq experiments from ENCODE human HeLa cells with accession ID and download link.
DOI: 10.6084/m9.figshare.10052729
title: MOESM1 of Fluctuations in Fabaceae mitochondrial genome size and content are both ancient and recent

description: Additional file 1: Table S1. Assembly information of four completed Fabaceae mitogenomes. Table S2. Summary of repeat sequences in mitogenomes of Fabaceae. Table S3. Pairwise comparison of shared DNA (kb) among the mitochondrial genome of Fabaceae species. Table S4. Pairwise K2P distance among the mitochondrial genome of Fabaceae species. Table S5. Primer sequences and resulting amplification products from mitogenome finishing. Table S6. Accession numbers of mitogenomes used in comparative genomics and phylogenetic analyses. Table S7. Mitochondrial and plastid genes included in phylogeny reconstructions.
DOI: 10.6084/m9.figshare.10052729.v1
title: MOESM1 of Fluctuations in Fabaceae mitochondrial genome size and content are both ancient and recent

description: Additional file 1: Table S1. Assembly information of four completed Fabaceae mitogenomes. Table S2. Summary of repeat sequences in mitogenomes of Fabaceae. Table S3. Pairwise comparison of shared DNA (kb) among the mitochondrial genome of Fabaceae species. Table S4. Pairwise K2P distance among the mitochondrial genome of Fabaceae species. Table S5. Primer sequences and resulting amplification products from mitogenome finishing. Table S6. Accession numbers of mitogenomes used in comparative genomics and phylogenetic analyses. Table S7. Mitochondrial and plastid genes included in phylogeny reconstructions.
DOI: 10.6084/m9.figshare.10052702
title: MOESM6 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 6. To key drivers assigned GO terms of biological processes using the DAVID Bioinformatics Resources 6.8.
DOI: 10.6084/m9.figshare.10052699
title: MOESM5 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 5. Calculated module memberships and gene significances together with identified key drivers.
DOI: 10.6084/m9.figshare.10052693
title: MOESM3 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 3. Lists of analytes and their assignment to the obtained modules.
DOI: 10.6084/m9.figshare.10052696
title: MOESM4 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 4. Summary of enriched pathways for each module.
DOI: 10.6084/m9.figshare.10052687
title: MOESM1 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 1. FCs and p-values obtained from proteomics, metabolomics and SH2 profiling.
DOI: 10.6084/m9.figshare.10052690
title: MOESM2 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 2. Scaled data from proteomics and metabolomics that have been used for WGCNA.
DOI: 10.6084/m9.figshare.10052693.v1
title: MOESM3 of An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

description: Additional file 3. Lists of analytes and their assignment to the obtained modules.
DOI: 10.6084/m9.figshare.10052675
title: MOESM2 of Barriers to and solutions for addressing insufficient professional interpreter use in primary healthcare

description: Additional file 2. *Questions for Interpreter Agencies * Questionnaire for interpreter agencies on services provided and financial instruments known.
DOI: 10.6084/m9.figshare.10052675.v1
title: MOESM2 of Barriers to and solutions for addressing insufficient professional interpreter use in primary healthcare

description: Additional file 2. *Questions for Interpreter Agencies * Questionnaire for interpreter agencies on services provided and financial instruments known.
DOI: 10.6084/m9.figshare.10052663
title: S1_raw data for behavior analysis.xlsx

description: Raw data for behavior analysis of GluD1 knockout mice with a pure C57BL/6N background.<br>