cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7875356
title: Timed Sequence Task - Data

description: Timed Sequence Task - data


Raw and generated data from Timed Sequence Task. Data are generated by set of codes for standard operant boxes equipped with two fixed levers and a feeder (Med Associates, MED-307A-B1) and operated by Med-PC V software. 


Names of the tasks indicate the required sequences of lever presses (eg left - left - right - right). Individual inter-press intervals are specifically defined and are logged in great detail (ie. different types of incorrect presses are distinguished and recorded separately).


 


Operant boxes code is available here: Timed Sequence Task - OB.


Python scripts for the automated analysis of the resulting task logs are available on GitHub: Timed Sequence Task Analysis


 


Dataset contains following files


raw_data/data_vpa_final.csv



	
original, complete log of all tasks as exported from Med-PC V Software
	
columns are described in separate file Data VPA final - columns structure.txt



raw_data/mastersheet_complete_one_file.csv :



	
further context for the raw log allowing to split the original log in multiple task logs;  format  [ mouse - day - task ] ; this can be done using scripts provided here: https://doi.org/10.5281/zenodo.7881058 



 


generated data/data_by_task/[task-log].csv 



	
data from complete log filtered according to mastersheet into specific [task-log].csv files



generated_data/subanalysis_results/[subanalysis-name]/[task-name].csv



	
results of specific subanalyses divided by task names into separate files.
	

		
e.g. count_all_presses_test/LLPP-count_all_presses_test.csv = subanalysis count all presses for LLPP task
	
	
	
note that csv files in this directory have different structure, according to selected subanalysis
DOI: 10.6084/m9.figshare.12660952.v1
title: Additional file 3 of Identification of candidate biomarkers and pathways associated with psoriasis using bioinformatics analysis

description: Additional file 3: Table S3. The sample basic statistic information of GSE14905 dataset.
DOI: 10.6084/m9.figshare.13186881.v2
title: SNX29, a new susceptibility gene shared with major mental disorders in Han Chinese population

description: Environmental and genetic factors play important roles in the development of schizophrenia (SCZ), bipolar disorder (BPD) or major depressive disorder (MDD). Some risk loci are identified with shared genetic effects on major psychiatric disorders. To investigate whether <i>SNX29</i> gene played a significant role in these psychiatric disorders in the Han Chinese population. We focussed on 11 single-nucleotide polymorphisms (SNPs) harbouring <i>SNX29</i> gene and carried out case–control studies in patients with SCZ (<i>n</i> = 1248), BPD (<i>n</i> = 1344), or MDD (<i>n</i> = 1056), and 1248 healthy controls (HC) recruited from the Han Chinese population. We constructed weighted gene co-expression network analysis (WGCNA) and extracted significant modules by R package. We found that rs3743592 was significantly associated with MDD and rs6498263 with BPD in both allele and genotype distributions. Before correction, rs3743592 showed allelic and genotypic significance with SCZ, rs6498263 showed allelic significance with SCZ. WGCNA identified top 10 modules of co-expressed genes. Gene Ontology (GO) and pathway analysis were used to examine the functions of SNX29, which revealed that SNX29 was involved in the regulation of a number of biological processes, such as TGF-beta, ErbB, and Wnt signalling pathway, etc. Our results supported common risk factors in <i>SNX29</i> might share among these three mental disorders in the Han Chinese population.
DOI: 10.6084/m9.figshare.22622114
title: Additional file 2 of The microbial dark matter and “wanted list” in worldwide wastewater treatment plants

description: Additional file 2: Table S1. List of projects. Table S2. The “wanted list” of activated sludge at global level. Table S3. The “wanted list” of activated sludge at global level (Strength). Table S4. The “wanted list” of activated sludge at global level (loose). Table S5. The quantity of ASVs and corresponding aligned genomes in different samples. Table S6. The list of sequenced genomes in activated sludge. Table S7. The list of sequenced genomes in Biofilm. Table S8. The list of sequenced genomes in anaerobic digestion sludge.
DOI: 10.6084/m9.figshare.22622114.v1
title: Additional file 2 of The microbial dark matter and “wanted list” in worldwide wastewater treatment plants

description: Additional file 2: Table S1. List of projects. Table S2. The “wanted list” of activated sludge at global level. Table S3. The “wanted list” of activated sludge at global level (Strength). Table S4. The “wanted list” of activated sludge at global level (loose). Table S5. The quantity of ASVs and corresponding aligned genomes in different samples. Table S6. The list of sequenced genomes in activated sludge. Table S7. The list of sequenced genomes in Biofilm. Table S8. The list of sequenced genomes in anaerobic digestion sludge.
DOI: 10.6084/m9.figshare.13186881.v1
title: <i>SNX29</i>, a new susceptibility gene shared with major mental disorders in Han Chinese population

description: Environmental and genetic factors play important roles in the development of schizophrenia (SCZ), bipolar disorder (BPD) or major depressive disorder (MDD). Some risk loci are identified with shared genetic effects on major psychiatric disorders. To investigate whether <i>SNX29</i> gene played a significant role in these psychiatric disorders in the Han Chinese population. We focused on 11 single-nucleotide polymorphisms (SNPs) harboring <i>SNX29</i> gene and carried out case-control studies in patients with SCZ (n = 1,248), BPD (n = 1,344), or MDD (n = 1,056), and 1,248 healthy controls (HC) recruited from the Han Chinese population. We constructed weighted gene co-expression network analysis (WGCNA) and extracted significant modules by R package. We found that rs3743592 was significantly associated with MDD and rs6498263 with BPD in both allele and genotype distributions. Before correction, rs3743592 showed allelic and genotypic significance with SCZ, rs6498263 showed allelic significance with SCZ. WGCNA identified top ten modules of co-expressed genes. Gene Ontology (GO) and pathway analysis were used to examine the functions of SNX29, which revealed that SNX29 was involved in the regulation of a number of biological processes, such as TGF-beta, ErbB, and Wnt signaling pathway, etc. Our results supported common risk factors in <i>SNX29</i> might share among these three mental disorders in the Han Chinese population.
DOI: 10.6084/m9.figshare.22622465.v1
title: Additional file 6 of Identification of ZBTB4 as an immunological biomarker that can inhibit the proliferation and invasion of pancreatic cancer

description: Additional file 6: Table S4. Gene Ontology term enrichment analysis of the ZBTB4 and its interacting genes.
DOI: 10.6084/m9.figshare.22622465
title: Additional file 6 of Identification of ZBTB4 as an immunological biomarker that can inhibit the proliferation and invasion of pancreatic cancer

description: Additional file 6: Table S4. Gene Ontology term enrichment analysis of the ZBTB4 and its interacting genes.
DOI: 10.6084/m9.figshare.13187348.v2
title: A regional-scale assessment of micro-organic contaminants in shallow groundwater in the Pearl River Delta, China

description: Industrialization and urban expansion can result in the contamination of shallow groundwater by micro-organics (MO) in the Pearl River Delta (PRD), China. This study provides a regional scale assessment of MO contaminants in shallow groundwater in the PRD, investigating the occurrence and distribution of different compound groups, highlighting the relationship between MOs and aquifers, and between MOs and land-use. The main influence of the vadose zone and regional socioeconomic development on each relationship is also analyzed. Twenty-one compounds were detected, with naphthalene, acetophenone, 2-methylnaphthalene and chloroform recording the highest frequencies (1.4–3.1%), 2-methylphenol (328 μg/L), 1,3,5-trimethylbenzene (59 μg/L) and 2,4-dimethylphenol (53.4 μg/L) recorded the highest concentrations. Due to differences in lithology and thickness of the vadose zone over different aquifer groups, notable differences in MOs were recorded between aquifer groups. Twenty-one compounds were also detected with the highest concentrations in Granular aquifers; Karst aquifers recorded the lowest concentration and fewest number of compounds. Different land-use types have also resulted in notable differences in MO contamination, particularly for natural land-use types and urban-industrial types. Natural land recorded both the smallest number of compounds and the lowest concentrations; urban and industrial land-use type had 14 compounds not recorded in other land-use types. Principal component analysis results indicated that urbanization and industrialization in the PRD region were the main driving mechanisms of groundwater MO contamination (via discharges of untreated wastewater). This finding was also verified by the strong positive relationships between waste water levels, discharge volume and, chloride concentrations and MO of the shallow groundwater in the PRD.
DOI: 10.6084/m9.figshare.10047938
title: Additional file 7: Table S2. of Identification of the WRKY gene family and functional analysis of two genes in Caragana intermedia

description: Expression data for 28 CiWRKY genes with complete ORFs based on drought-treated transcriptome data. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.10047938.v1
title: Additional file 7: Table S2. of Identification of the WRKY gene family and functional analysis of two genes in Caragana intermedia

description: Expression data for 28 CiWRKY genes with complete ORFs based on drought-treated transcriptome data. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.20001017.v1
title: Additional file 16 of Integrated proteogenomic characterization of urothelial carcinoma of the bladder

description: Additional file 16. Table S4: Differentially expressed proteins between MIBCs and NMIBCs. Related to Figure 4, Additional file 4: Fig. S4. A. Lists of differentially expressed proteins in MIBCs and NMIBCs. B. Lists of differentially expressed proteins in chromosome 5p gain compared with WT. C. The list of 9 significant positive cis-effects on chromosome 5p.
DOI: 10.5281/zenodo.10890382
title: Dataset shown on the HMC FAIR Data Dashboard as of June 2023

description: This dataset contains literature metadata harvested for 15 research centers of the Helmholtz Association of German research centers (KIT, FZJ, DESY, AWI, DLR, GFZ, HZB, GEOMAR, MDC, UFZ, HZDR, DZNE, GSI, CISPA, HMGU) during the first two quarters of 2023 as well as metadata of linked data publications, as extracted from the ScholExplorer API. F-UJI scores for these data publications are based on F-UJI version 1.4.7 using the FAIRsFAIR metrics 0.4. The status of the data represents the data shown on the HMC Dashboard on Open and FAIR Data in Helmholtz (https://fairdashboard.helmholtz-metadaten.de/) as of June 2023.
DOI: 10.15468/dl.ed6eat
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormocarpum drakei R.Vig."
 ]
}

 The dataset includes 61 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061924-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqybgu
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma albicaulis Popov"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061925-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnfdnc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepeta kurramensis Rech.f."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061927-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fu3ess
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Omphalea malayana Merr."
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061929-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nyjw9k
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nanorrhinum ramosissimum (Wall.) Betsche"
 ]
}

 The dataset includes 250 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061928-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pddp7p
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nototrichium sandwicense (A.Gray) Hillebr."
 ]
}

 The dataset includes 610 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061930-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynm3jz
title: Occurrence Download

description: A dataset containing 8027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xantusia vigilis Baird, 1859",
 "Geometry POLYGON((-124.756451627043 24.5232175268442, -124.756451627043 49.3844869955705, -66.9490903544593 49.3844869955705, -66.9490903544593 24.5232175268442, -124.756451627043 24.5232175268442))"
 ]
}

 The dataset includes 8027 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061926-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97pbuk
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormocarpum flavum J.B.Gillett"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061931-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fjs5e
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma alborosea Fisch. & C.A.Mey."
 ]
}

 The dataset includes 207 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061933-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q53ucp
title: Occurrence Download

description: A dataset containing 10578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tulipa gesneriana L."
 ]
}

 The dataset includes 10578 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061932-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bydeph
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepeta ladanolens Lipsky"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061934-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szvvjd
title: Occurrence Download

description: A dataset containing 685 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xantusia vigilis vigilis",
 "Geometry POLYGON((-124.756451627043 24.5232175268442, -124.756451627043 49.3844869955705, -66.9490903544593 49.3844869955705, -66.9490903544593 24.5232175268442, -124.756451627043 24.5232175268442))"
 ]
}

 The dataset includes 685 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061935-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dn6wzc
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Omphalea mansfeldiana Mildbr."
 ]
}

 The dataset includes 37 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061936-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjvhqv
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormocarpum keniense J.B.Gillett"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061937-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5u4jd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nanorrhinum roseiflorum Mosti, Raffaelli & Tardelli"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061939-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qez3cg
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nouelia insignis Franch."
 ]
}

 The dataset includes 188 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061938-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10897663
title: anodorhynchus_glaucus_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10897664
title: anodorhynchus_glaucus_spades_01.fasta.gz

description: .
DOI: 10.15468/dl.7q6n3q
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Onosma aleppica Boiss."
 ]
}

 The dataset includes 84 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061940-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6ez88
title: Occurrence Download

description: A dataset containing 649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepeta laevigata (D.Don) Hand.-Mazz."
 ]
}

 The dataset includes 649 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061941-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8xhwd
title: Occurrence Download

description: A dataset containing 285 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xantusia arizonae Klauber, 1931",
 "Geometry POLYGON((-124.756451627043 24.5232175268442, -124.756451627043 49.3844869955705, -66.9490903544593 49.3844869955705, -66.9490903544593 24.5232175268442, -124.756451627043 24.5232175268442))"
 ]
}

 The dataset includes 285 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061942-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv4ra8
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Omphalea occidentalis Leandri"
 ]
}

 The dataset includes 120 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061943-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4msqpp
title: Occurrence Download

description: A dataset containing 372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ormocarpum kirkii S.Moore"
 ]
}

 The dataset includes 372 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061944-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpq2gg
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nanorrhinum sagittatum (Poir.) Yousefi & Zarre"
 ]
}

 The dataset includes 441 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061945-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uuzr4
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Novaguinea rudalliae D.J.N.Hind"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061946-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25512991
title: NSCLC data

description: The study incorporated RNA-sequencing (RNA-seq) and whole-exome sequencing (WES) data from 38 patients with non-small cell lung cancer (NSCLC), along with relevant clinical data.
DOI: 10.6084/m9.figshare.25512991.v1
title: NSCLC data

description: The study incorporated RNA-sequencing (RNA-seq) and whole-exome sequencing (WES) data from 38 patients with non-small cell lung cancer (NSCLC), along with relevant clinical data.