cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/eguddb
title: Microbial community in permeable intertidal sediment

description: The microbial community in permeable intertidal sediment, Gloucester Point
DOI: 10.15468/ahrzgg
title: Revealing the diversity of bacteria in the active layer of permafrost at Spitsbergen island (Arctic) – Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration

description: In this dataset, results of investigating the culturable biodiversity of microbial communities of Arctic soils – a pristine environment with still poorly explored biodiversity, are presented. The soil sampling covered diverse Arctic ecosystems, including soils under marine influence, zoogenic soil, and glacier moraine. Samples were taken in August 2017. Physicochemical analyses showed a relatively high ratio of carbon to nitrogen (average 10:1) in the analyzed soils, which indicates a high influence of soil microorganisms on the shaping of the investigated ecosystems. Cultivation experiments using different rich and minimal growth media were conducted and metabarcoded using Ilumina sequencing of 16S rDNA to assess the overall microbial cultivability of Arctic soils. As revealed from the combining this results with soil metabarcoding (soil metabarcoding not included in this dataset), the culture-dependent approach allowed for the recovery of 6.37 % of bacterial genera when compared with the culture-independent approach. This indicates that majority of bacterial taxa may remain unexplored when performed sole classical cultivation approach. 

This dataset is related to the paper: Dziurzyński, M., Górecki, A., Pawłowska, J., Istel, Ł., Decewicz, P., Golec, P., Styczyński, M., Poszytek, K., Rokowska, A., Górniak, D., & Dziewit, Ł. (2023). Revealing the diversity of bacteria and fungi in the active layer of permafrost at Spitsbergen Island (Arctic) – Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration. Science of The Total Environment, 856(Part 2), 159072, containing also fungal data.[This dataset was processed using the GBIF Metabarcoding Data Toolkit.]
DOI: 10.15468/9cu1mz
title: 16S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh

description: In order to characterize the microbial biodiversity of arsenic contaminated water and surrounding soil a metagenomic approach by sequencing six hypervariable regions of 16S rRNA gene has been performed.
DOI: 10.15468/v46e2k
title: SSU rRNA amplicon of the Arctic Ocean during Winter-Spring Transition

description: One of the main concerns about the Arctic Ocean has been the changing sea ice regime with a reduction in the summer sea ice extent and a shift in dominance from thicker, perennial multiyear ice towards thinner, first-year ice. As the dietary basis of marine food webs and central players of biogeochemical cycles, microbial communities play an irreplaceable role when evaluating the ecological impact of the Arctics thinner ice regime. During the Norwegian young sea Ice cruise 2015 (N-ICE2015), that took place in drifting pack ice north of Svalbard between January-June 2015, seawater was collected, at 5, 20 or 50, 250 m depth in 9th March, 27th April and 16th June, together with physical and biogeochemical data. Through the massively parallel sequencing of SSU rRNA amplicon we expect to get a snapshot of the Arctics microbiota diversity and structure through the dark-light transition.
DOI: 10.15468/dl.fbdpjd
title: Occurrence Download

description: A dataset containing 37312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa pigra",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 37312 records from 401 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008703-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/bu3jff
title: Fungal community across a tropical forest disturbance gradient

description: Woody debris is an important component of forest ecosystems, forming a substantial carbon pool and habitat for a diversity of organisms, including specialist species. The decomposition of woody debris is controlled by both abiotic and biotic factors. However, much less is known about the biotic factors, such as the contribution of fungi to nutrient cycling in tropical biomes. Moreover, given the high rates of tropical deforestation and forest degradation, it is vital to better understand anthropogenic impacts on essential biotic processes, such as decomposition. Hence, we set out to link the impacts of forest degradation and the role of biotic characteristics, especially fungal diversity and composition, in determining woody debris decomposition rates in a tropical biomeSpecifically, we examined the following questions; (i) what is the effect of wood species identity on the diversity and community structure of fungi; (ii) how does fungal diversity and composition in woody debris change through time and with state of decay; (iii) how does the degree of forest disturbance affect fungal diversity and community structure and (iv) how do these factors determine the rate of wood decomposition?
DOI: 10.15468/vdaojq
title: Sediment metagenome

description: Anaerobic methane oxidizing enrichment sampled from coastal tropical wetland
DOI: 10.15468/ipnigo
title: Stratification of anaerobic methanotrophs in cold-seep sediments

description: Methane seepages typically harbor communities of anaerobic methane oxidizers (ANME), however knowledge about fine-scale vertical variation of ANME in response to geochemical gradients is limited. Here we investigate microbial communities in sediments at two different locations at thge Nyegga field; (1) a push-core below a white microbial mat in the G11 pockmark, and (2) a Gravity-core at CNO3. Both experiments were analysed using 16S rRNA gene tag pyrosequencing and real time quantitative PCR.
DOI: 10.15468/fjtafm
title: MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer

description: DNA from 33 Mai Po sediments have been extracted and amplified by 515F/909R primer pairs (for prokaryotic 16S rRNA gene). The prokaryotic communities of these 33 samples were obtained.
DOI: 10.15468/ejieul
title: DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016

description: Seawater will be collected and filtered for microbiome and bacterioplankton sequencing and analyses at various depths during planned DEEPEND cruise expeditions to the GOM in 2016. Filters will be stored and then processed for total environmental genomic DNA according to standard methods (see earthmicrobiome.org). 16S rRNA amplicon libraries covering the V4 hypervariable regions will be generated with universal PCR primers and then sequenced on an Illumina MiSeq DNA sequencing platform. Raw paired-end sequences were joined and quality filtered in the bioinformatics program, QIIME. Vertical baseline characterizations will track alpha and beta diversity at different depths ranging from 0 1500 m, assess seasonal variation, and examine variation related to nektonic vertical migration. Microbiome analyses will also consider environmental variables unique to the GOM, such as Mississippi river green water inputs, mesoscale features, or microbiomes of associated GOM marine fauna as part of community ecology profiles. When possible, correlations will be made to other environmental factors such as nutrient concentrations.
DOI: 10.15468/bqpjrt
title: LMO 16S 2014, 2015 (0.2, 3-0.2, 3)

description: Bacterial (and some archaeal) V3V4 sequences collected at the Linnaeus Microbial Observatory (LMO) in the Baltic Sea 2014-15 using three different filter setups: directly on 0.2 um, on 0.2 um after prefiltering with a 3 um filter and directly on a 3 um filter.
DOI: 10.15468/mqhshi
title: Sediment Microcosm Metagenome

description: Sediment Microcosm - Oil_contaminated*reduced_water_pH
DOI: 10.18419/darus-4513
title: Replication Data for: Increasing Dynamic Accuracy using Predictive Feedforward with Hybrid Modeling

description: &lt;p&gt;Experimental dataset for model identification and validation of feedforward control on a five-axis milling machine.&lt;/p&gt;

&lt;p&gt;This dataset belongs to the Open Access publication "Increasing dynamic accuracy of machine tools using predictive feedforward optimization with hybrid modeling" (doi: &lt;a href="https://doi.org/10.1016/j.rcim.2025.103137"&gt;10.1016/j.rcim.2025.103137&lt;/a&gt;) A detailed description of the setup can be found in the publication.&lt;/p&gt;

&lt;p&gt;Feedback controllers from frequency inverter:&lt;/p&gt;

&lt;ul&gt;
 &lt;li&gt; PI velocity controller with Kp = 0.035 [Nm/(rad/s)], Tn = 2.6 [ms].&lt;/li&gt;
 &lt;li&gt; P position controller with Kp = 35 [1/s].&lt;/li&gt;
 &lt;/ul&gt;

&lt;p&gt;The dataset contains the following folders (Feel free to contact the dataset owner if you have any questions about the dataset.):&lt;/p&gt;

&lt;ul&gt;
 &lt;li&gt; Identification
 &lt;br&gt; measurements for identification of discrepancy model with different constant velocities as reference, and velocity sweeps for identification in frequency domain.
 &lt;/li&gt;
 &lt;li&gt; Validation\energy_consumption
 &lt;br&gt; measured energy consumption on the test bench of different feedforward schemes, quantified by direct current (DC) power
 &lt;/li&gt;
 &lt;li&gt; Validation\multi-axis butterfly contour
 &lt;br&gt; multi-axis tracking experiments comparing different feedforward schemes, the used butterfly G-code is also provided
 &lt;/li&gt;
 &lt;li&gt; Validation\sensitivity analysis
 &lt;br&gt; sensitivity analysis of the proposed MPFFC scheme against parametric model uncertainty
 &lt;/li&gt;
 &lt;li&gt; Validation\tracking single axis (const velocity)
 &lt;br&gt; single-axis tracking experiments at (unseen) consant velocities
 &lt;/li&gt;
 &lt;li&gt; Validation\tracking single axis (transient)
 &lt;br&gt; single-axis tracking experiments demonstrating transient behavior
 &lt;/li&gt;
 &lt;/ul&gt;
description: TwinCAT 3, 4024.65
description: ctrlX DRIVE, 1.16.2
DOI: 10.15468/9sjwjh
title: LMO 16S 2012-13 (3 um)

description: Bacterial (and some archaeal) V3V4 sequences collected at the Linnaeus Microbial Observatory (LMO) in the Baltic Sea 2012-13 collected directly on a 3 um filter.
DOI: 10.15468/dl.emvdsj
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008704-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csmp7a
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008705-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udakh5
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 94 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008707-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/cfrj8b
title: Metagenome microbial communities of bottom sediments of the Kara Sea

description: Metagenomic analysis of the microbial community in the bottom sediments Kara Sea shelf Yenisei Gulf and Gyda Bay by pyrosequencing
DOI: 10.15468/dl.s4suqa
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Senegalia tenuifolia"
 ]
}

 The dataset includes 135 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008706-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/n5nrp8
title: A comparison of microbial community composition in four contrasting sediments in the Celtic Sea

description: As part of the NERC funded Shelf Seas Biogeochemistry program, microbial structure, diversity and abundance was compared in four contrasting sediment types, from mud to sand. Samples were collected before (March 2015) and immediately after a spring diatom bloom (May) and also again in late summer (August). These data are 16S rRNA and 18S rRNA gene sequence sets from the four sediment types, and from the three sampling time points. Relative abundance and composition was determined using Illumina MiSeq (MrDNA, TX, USA). The V1V3 region of 16S rRNA was amplified using the PCR primers 27F (Vergin et al., 1998) and 519Rmod (Andreotti et al., 2011) using the PCR and sequencing conditions described in Tait et al. (2015). For 18S rRNA genes, the primers Euk7F and Euk570R were used.
DOI: 10.15468/o4lsfq
title: Bacterial 16S rRNA and fungal ITS Metagenome

description: The flooding crisis in Thailand in 2011 is one of the biggest recorded floods which caused enormous scale of damages to ecological and human habitats and public health concerns. In this study, bacterial and fungal diversity in sediments and waters collected from flooded areas in Bangkok and suburban covering residential, agricultural, and industrial areas were analyzed using high-throughput 454 pyrosequencing of 16S rRNA/ internal transcribed spacer sequences (ITS). Proximate phylogeny analysis showed differences in microbial distribution in water and sediment samples with variation in diversity profiles according to sampling locations.
DOI: 10.15468/lv8frg
title: Marine metagenome ICM_AWP

description: Variation of Microplanktonic Communities Composition with Depth in an area under a Meddy Influence.
DOI: 10.15468/kmpr08
title: Microbial communities in deep eastern Mediterranean Sea surface sediments

description: In order to elucidate spatial distribution of microorganisms in deep sea surface sediments and to reduce the general information deficiency regarding microbial community composition in sediments of the eastern Mediterranean Sea, sequences of surface sediment samples from 9 stations in the Levantine basin were produced by 454 massive tag sequencing and compared to each other.
DOI: 10.15468/qvn8da
title: Aarhus Bay sediment PCR amplified product sequencing

description: To identify acetate-assimilating/utilizing microbes in marine sediments
DOI: 10.15468/bh1u0p
title: Trichodesmium spiralis associated microbiome Targeted loci

description: We sequenced 16S rRNA gene amplicons of samples collected from Trichodesmium spiralis colonies and filtered seawater obtained concomitantly to determine the microbiome of this Cyanobacterium in comparison with the community structure of the surrounding seawater.
DOI: 10.15468/dl.t946jg
title: Occurrence Download

description: A dataset containing 5047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimosa quadrivalvis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5047 records from 159 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008709-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fj4grb
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008711-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/h8trhv
title: uncultured prokaryote Targeted Locus (Loci)

description: Analysis of community composition of sulfur-oxidizing bacteria in East China Sea using soxB as a functional molecular marker
DOI: 10.15468/dl.hr7kam
title: Occurrence Download

description: A dataset containing 674284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2023",
 "Country is Netherlands"
 ]
}

 The dataset includes 674284 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008658-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtkxs3
title: Occurrence Download

description: A dataset containing 121226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gleditsia triacanthos",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 121226 records from 548 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008653-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17184233
title: Código CNEFE — Reproducible pipelines for CNEFE 2022
DOI: 10.15468/h6dr6l
title: Microbiome (Archaea, Bacteria and Fungi) in soils from King George Island (Antarctica)

description: Amplicon sequencing dataset (Illumina MiSeq) of Bacteria (16S); Archaea (16S) and Fungi (ITS) in soils from the Fildes region on King George Island (Antarctica).
DOI: 10.5281/zenodo.17184232
title: Código CNEFE — Reproducible pipelines for CNEFE 2022
DOI: 10.15468/dl.73xvck
title: Occurrence Download

description: A dataset containing 1488 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula lactiflora",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1488 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008710-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/zv3upc
title: Abalone seed nursing ecosystem Metagenome

description: In this study, using abalone seed nursing pond as a model system, we separately collected the time-series samples of three
DOI: 10.15468/hhkhz2
title: Bacteria and Archaea biodiversity in Arctic and Subarctic terrestrial ecosystems in Alaska

description: Methane emissions from aquatic and terrestrial ecosystems play a crucial role in global warming, which is particularly affecting high-latitude ecosystems. As major contributors to methane emissions in natural environments, the microbial communities involved in methane production and oxidation deserve a special attention. Microbial diversity and activity are expected to be strongly affected by the already observed (and further predicted) temperature increase in high-latitude ecosystems, eventually resulting in disrupted feedback methane emissions. The METHANOBASE project has been designed to investigate the intricate relations between microbial diversity and methane emissions in Arctic, Subarctic and Subantarctic ecosystems, under natural (baseline) conditions and in response to simulated temperature increments. We report here a small subunit ribosomal RNA (16S rRNA) analysis of lake, peatland and mineral soil ecosystems.
DOI: 10.15468/flldbq
title: marine plankton metagenome Targeted loci environmental

description: Study the pigmentation composition and taxonomic composition of Synechococcus communities in the South China Sea and East China Sea
DOI: 10.5281/zenodo.17184189
title: Skull measurements in InoStranCevia afriCana, the first diagnosable gorgonopsian (Therapsida, Synapsida) from the Metangula graben (Mozambique): new anatomical observations and biostratigraphic implications

description: Skull measurements
RegionMeasurements (cm)Skull length (preserved portion)33.5Skull height (including the braincase base)16.5Occipital height (from the bottom of the occipi- 14 tal condyle)Occipital width (left portion incomplete; right portion rotated posteriorly)~ 19Snout length (preserved portion only =anterior to the left orbit)11.4Intertemporal width17Interorbital width15.8Right temporal fenestra anteroposterior length9.5Right temporal fenestra dorsoventral height7Orbit anteroposterior length10.7Orbit dorsoventral height4.8
description: Published as part of Macungo, Zanildo, Benoit, Julien & Araújo, Ricardo, 2025, InoStranCevia afriCana, the first diagnosable gorgonopsian (Therapsida, Synapsida) from the Metangula graben (Mozambique): new anatomical observations and biostratigraphic implications, pp. 3 in Swiss Journal of Palaeontology (12) 144 (1) on page 3, DOI: 10.1186/s13358-025-00348-7, http://zenodo.org/record/16971896
DOI: 10.5281/zenodo.17184190
title: Skull measurements in InoStranCevia afriCana, the first diagnosable gorgonopsian (Therapsida, Synapsida) from the Metangula graben (Mozambique): new anatomical observations and biostratigraphic implications

description: Skull measurements
RegionMeasurements (cm)Skull length (preserved portion)33.5Skull height (including the braincase base)16.5Occipital height (from the bottom of the occipi- 14 tal condyle)Occipital width (left portion incomplete; right portion rotated posteriorly)~ 19Snout length (preserved portion only =anterior to the left orbit)11.4Intertemporal width17Interorbital width15.8Right temporal fenestra anteroposterior length9.5Right temporal fenestra dorsoventral height7Orbit anteroposterior length10.7Orbit dorsoventral height4.8
description: Published as part of Macungo, Zanildo, Benoit, Julien & Araújo, Ricardo, 2025, InoStranCevia afriCana, the first diagnosable gorgonopsian (Therapsida, Synapsida) from the Metangula graben (Mozambique): new anatomical observations and biostratigraphic implications, pp. 3 in Swiss Journal of Palaeontology (12) 144 (1) on page 3, DOI: 10.1186/s13358-025-00348-7, http://zenodo.org/record/16971896