cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48577/jpl.9rxnfw
title: JWST MIRI MRS Images Disk Winds, Water, and CO in an Edge-On Protoplanetary Disk

description: We present JWST MIRI MRS observations of the edge-on protoplanetary disk around the young sub-solar mass star Tau 042021, acquired as part of the Cycle 1 GO program “Mapping Inclined Disk Astrochemical Signatures (MIDAS).” These data resolve the mid-IR spatial distributions of H2, revealing X-shaped emission extending to ∼200 au above the disk midplane with a semi-opening angle of 35 ± 5◦. We do not velocity-resolve the gas in the spectral images, but the measured semi-opening angle of the H2 is consistent with an MHD wind origin. A collimated, bipolar jet is seen in forbidden emission lines from [Ne II], [Ne III], [Ni II], [Fe II], [Ar II], and [S III]. Extended H2O and CO emission lines are also detected, reaching diameters between ∼ 90 and 190 au, respectively. Hot molecular emission is not expected at such radii, and we interpret its extended spatial distribution as scattering of inner disk molecular emission by dust grains in the outer disk surface. H I recombination lines, characteristic of inner disk accretion shocks, are similarly extended, and are likely also scattered light from the innermost star-disk interface. Finally, we detect extended PAH emission at 11.3μm cospatial with the scattered light continuum, making this the first low-mass T Tauri star around which extended PAHs have been confirmed, to our knowledge. MIRI MRS line images of edge-on disks provide an unprecedented window into the outflow, accretion, and scattering processes within protoplanetary disks, allowing us to constrain the disk lifetimes and accretion and mass loss mechanisms.
DOI: 10.48577/jpl.pwrwgb
title: On the interchangeability of skin and near-surface air temperature trends over land

description: Satellite land surface temperature (Ts) records have now reached 20+ year length, but their trends may differ from historical records built from in-situ measurements of near-surface air temperature (Tas). In the ERA5 reanalysis, 60°S—60°N land Ts and Tas trends can differ by up to ±0.06 °C decade-1 over 20 years, or more on smaller spatial scales. Here I use outputs from ACCESS1-0 simulations with prescribed land Ts to understand changes in Ts and Tas. CO2’s effective radiative forcing (ERF) causes adjustments that warm Tas relative to Ts. In ACCESS1-0, vegetation enhances the adjustments to CO2 over land, so conclusions could be affected by model land surface schemes. Over-land feedbacks in ACCESS1-0 oppose the adjustments, resulting in small long-term effects on global temperature estimates. In coupled simulations from other models, there is no agreement on which warms more and the most extreme case shows global long-term differences of just 5 % between land Ts or land Tas trends. The results contrast with over-ocean behaviour where adjustments and feedbacks drive larger long-term Tas warming relative to Ts across all models.
DOI: 10.48577/jpl.812jjo
title: Crossover Master Model of the Equation-of-State for a Simple Fluid: Critical Universaility

description: We present a new extended parametric equation-of-state model for thermodynamic properties and the correlation length for a simple fluid near its liquid-gas critical point. The model involves 16 universal parameters in order to perfectly match 10 leading universal amplitudes of the asymptotic Ising-like limit of the critical-to-classical crossover functions calculated by Garrabos and Bervillier [Phys. Rev. E 74,021113 (2006)] from the massive renormalization scheme. The universal values of 8 Ising-like amplitude combinations are then matched exactly. The closure of the construction of parameters is determined after a careful analysis of the intrinsic limitation of parametric equations to describe the universal features at the first order of the confluent corrections-to-scaling. In the asymptotic mean-field limit, the crossover master model also reproduces the mean-field amplitude combinations except for the susceptibility case. The new model is compared with the crossover parameteric model previously developed by Agayan et. al [Phys. Rev. E 64, 02615 (2001)]. The residuals from comparison with the mean crossover functions of Garrabos and Bervillier are reported to define the application range of the crossover master model to any simple fluid for which the generalized critical coordinates of the liquid-gas critical point are known.
DOI: 10.17632/ztpk2nwzg5.1
title: Mapping the substrate landscape of protein phosphatase 2A catalytic subunit PPP2CA

description: Unmodified data relating to the iScience manuscript titled "Mapping the substrate landscape of protein phosphatase 2A catalytic subunit PPP2CA"
DOI: 10.5281/zenodo.10846042
title: LCDM_GCsp_polychord

description: This set
DOI: 10.5281/zenodo.10846043
title: LCDM_GCsp_polychord

description: This set
DOI: 10.6073/pasta/4be29d972e9ae19b571c836dab1f8fdf
title: Alaska 2004 Burns: Growth and survival of tree seedlings in post-fire experimental transplant study across 39 sites

description: This dataset contains measurements of tree seedlings growth for an experimental transplant study started in 2005 at sites that burned in 2004 in interior Alaska. Records are from a set of 39 intensive study sites that were formerly dominated by black spruce along the Steese, Taylor, and Dalton highways. Seedlings were monitored for 10 years, with detailed measurements in 2006, 2008, 2011, 2013, and 2015. Aboveground biomass was harvested in 2011.
DOI: 10.5281/zenodo.10846057
title: IODP Expedition 378 Visual core description

description: Descriptions of samples, generally at the section half and smear slide or thin section scale, were performed by shipboard scientists and recorded in the JRSO description software. Descriptive data for both macroscopic and microscopic examination were collected in a Microscoft Excel workbook by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.5281/zenodo.10846058
title: IODP Expedition 378 Visual core description

description: Descriptions of samples, generally at the section half and smear slide or thin section scale, were performed by shipboard scientists and recorded in the JRSO description software. Descriptive data for both macroscopic and microscopic examination were collected in a Microscoft Excel workbook by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.5281/zenodo.10846020
title: Cortese et al. 2024. The effect of metabolism on cognitive performance varies with task complexity in common minnows Phoxinus phoxinus

description: These datasets have been used to produce the figures and results of the manuscript entitled "The effect of metabolism on cognitive performance varies with task complexity in common minnows Phoxinus phoxinus" by Cortese D, Munson A, Storm Z, Jones NAR and Killen SS (2024).
DOI: 10.5281/zenodo.10846021
title: Cortese et al. 2024. The effect of metabolism on cognitive performance varies with task complexity in common minnows Phoxinus phoxinus

description: These datasets have been used to produce the figures and results of the manuscript entitled "The effect of metabolism on cognitive performance varies with task complexity in common minnows Phoxinus phoxinus" by Cortese D, Munson A, Storm Z, Jones NAR and Killen SS (2024).
DOI: 10.5281/zenodo.10845990
title: Calibration-free reaction yield quantification by HPLC with a machine-learning model of extinction coefficients

description: This repository contains all the data and code associated with the manuscript "Calibration-free reaction yield quantification by HPLC with a machine-learning model of extinction coefficients"

Mass spec and absorption chromatogram data are in reaction_set_1.zip, reaction_set_2.zip, and simulated_reaction_set.zip. The chemprop model trained on the Deep4Chem dataset is in Deep4Chem_chemprop.zip.
DOI: 10.5281/zenodo.10845991
title: Calibration-free reaction yield quantification by HPLC with a machine-learning model of extinction coefficients

description: This repository contains all the data and code associated with the manuscript "Calibration-free reaction yield quantification by HPLC with a machine-learning model of extinction coefficients"

Mass spec and absorption chromatogram data are in reaction_set_1.zip, reaction_set_2.zip, and simulated_reaction_set.zip. The chemprop model trained on the Deep4Chem dataset is in Deep4Chem_chemprop.zip.
DOI: 10.6073/pasta/513637f8d725c079bf29607695e441aa
title: Stream Storm Sample Data from White Clay Creek (WCC) Watershed in 2021

description: This data was collected to explore Nitrogen update dynamics in the water column of small streams during storm events. Data was collected using a combination of passive sampling and grab sampling of suspended sediments from the stream channel. Analysis of samples include: dissolved and total chemistry, suspended sediment load, biological and microbiological characteristics, and Nitrogen uptake rates.
DOI: 10.5281/zenodo.10846059
title: IODP Expedition 378 Thin section images

description: Hard rock and sediment thin section images were acquired using either the JRSO-developed Petrographic Image Capture and Archival Tool (PICAT) imager or (rarely) an upright microscope and a digital camera. Sample images are acquired in unpolarized, polarized, and/or cross-polarized light. Image files are presented compressed by hole.
DOI: 10.5281/zenodo.10846060
title: IODP Expedition 378 Thin section images

description: Hard rock and sediment thin section images were acquired using either the JRSO-developed Petrographic Image Capture and Archival Tool (PICAT) imager or (rarely) an upright microscope and a digital camera. Sample images are acquired in unpolarized, polarized, and/or cross-polarized light. Image files are presented compressed by hole.
DOI: 10.26183/1a0r-e318
title: Image Data of Capsicum plant growth in Protected Horticulture: PC4C_CAPSI

description: The data set consists of colour images and depth images (RGBD) of capsicum plants, camera metadata, camera angles, and manually measured heights of a few selected plants. The Intel Relasense D415 camera is used on a camera platform to collect image data of the right side of one plant line and for three rooms with different light filters (diffused light, Smart Glass film, LLEAF film) in a glasshouse. The camera angle was measured for each data collection of a plant line and manually measured heights are available for ten selected plants per plant line. RGBD streams and their metadata are recoded as Rosbag(.bag) files, and manually measured camera angle, plant height and identified frame numbers for image frame extractions are saved in JSON (.json) files.
DOI: 10.48577/jpl.bshoh0
title: Design and Development of SWIM – Miniature, Untethered Underwater Robots for Exploring Ice-Ocean Interfaces

description: Here we discuss the design, development, and systemengineering of the SWIM (Sensing With Independent Microswimmwers) system, which consists of decimeter-scale, swimming micro-robots (micro-swimmers) equipped with ocean composition sensors, propelled by miniature actuators, and wirelessly communicating through water with ultrasound waves –envisioned to explore the ice-ocean interface of an Ocean Worldlike Europa or Enceladus. The micro-swimmers are designedwith a delta-wing form-factor for efficient packing of dozens ofrobots within a 5-10 liter cylindrical payload volume less than30 cm in diameter, and intended to be deployed individually oras a swarm from a single cryobot mothercraft. SWIM robotsare designed with primary redundancy through multiple robots(rather than subsystem redundancy found in many conventionalNASA spacecraft), and simple but robust mechanisms able tosurvive a long flight / descent phase and high-pressure environment. Work to date has focused on design, fabrication, testing,and integration of 6 main subsystems – sensing, propulsion,steering, communication, power, and structure – that leveragea combination of miniature COTS components and customfabricated hardware. Uniquely, current SWIM prototypes are369 x 152 x 65-130 mm and 1.7 L volume – approx. 3xlarger dimensions and 22x larger volume than the intendedfinal design (120 mm length and 75-100 mL volume) due toCOTS hardware, but still sufficiently sized to descend through6-inch boreholes drilled in ice on Earth to facilitate future fieldtesting. Preliminary results of the integrated prototype robot,including in-water open-loop and closed-loop testing at up to 1.2m/s (3.25 BL/s), as well as simulations of multiple swarm controlstrategies, will also be presented.
DOI: 10.5281/zenodo.10846065
title: IODP Expedition 378 Core drilling summary

description: Report includes detailed drilling data for each core: pump(s) used, mud pumped, strokes, shear pins/pressure, bit size/rotation, weight on bit, top drive torque, rate of penetration, core jams, winch and wirelines, core catcher/shoe and barrel, and whether core orientation, drillover, formation temperature, tracers, liners were used.
DOI: 10.5281/zenodo.10846066
title: IODP Expedition 378 Core drilling summary

description: Report includes detailed drilling data for each core: pump(s) used, mud pumped, strokes, shear pins/pressure, bit size/rotation, weight on bit, top drive torque, rate of penetration, core jams, winch and wirelines, core catcher/shoe and barrel, and whether core orientation, drillover, formation temperature, tracers, liners were used.
DOI: 10.5281/zenodo.10846073
title: IODP Expedition 378 Hole drilling summary

description: Report includes detailed drilling data: BHA length, bit parameters, and primary depth measurements.
DOI: 10.5281/zenodo.10846074
title: IODP Expedition 378 Hole drilling summary

description: Report includes detailed drilling data: BHA length, bit parameters, and primary depth measurements.
DOI: 10.5281/zenodo.10846079
title: Karakaya
DOI: 10.5281/zenodo.10846080
title: Karakaya
DOI: 10.5281/zenodo.10846114
title: Gene signatures of the Vanderbilt TNBC subtypes
DOI: 10.5281/zenodo.10846115
title: Gene signatures of the Vanderbilt TNBC subtypes
DOI: 10.6084/m9.figshare.25447579
title: A gzipped archive of some data table associated with this project.

description: We evolved an outbred diploid sexual population of budding yeast with weekly episodes of recombination in the presence of five different stressors along with YPD for 21 weeks. We culled populations in which asexual cheaters evolved, and pool-sequenced two replicate populations per drug at six timepoints (weeks 1, 5, 9, 13, 16 and 21). Given that the base population used to begin the experiment was derived from a collection of 18 known founder strains, we were able to estimate founder haplotype frequencies throughout the genome from the poolseq data and examine haplotype change over time. For the first 16 weeks of the experiment, evolution is extremely repeatable between replicates within a drug, but different between drugs. For all populations the entire genome shows haplotype frequency change, either due to direct or indirect selection acting on variation in the base population, despite high rates of recombination and un-recombined haplotype block sizes of less than 100kb. Haplotype trajectories are dominated by an early purging of the dominant local haplotype, followed by a single replacement haplotype quickly increasing in frequency and then changing very little. The new equilibrated haplotype frequencies occur long before fixation in most cases, supporting a trait-based model of phenotypic evolution. Throughout the genome a consistent pattern of change is that one of the 18 local haplotypes changes a great deal, with the others changing very little. We finally repeat the analysis of the experiment ignoring founder haplotype information, focusing instead on directly ascertained frequency changes at SNPs. When we only employ directly ascertained SNP frequencies many of the above patterns observed are not easily detected.
DOI: 10.6084/m9.figshare.25447579.v1
title: A gzipped archive of some data table associated with this project.

description: We evolved an outbred diploid sexual population of budding yeast with weekly episodes of recombination in the presence of five different stressors along with YPD for 21 weeks. We culled populations in which asexual cheaters evolved, and pool-sequenced two replicate populations per drug at six timepoints (weeks 1, 5, 9, 13, 16 and 21). Given that the base population used to begin the experiment was derived from a collection of 18 known founder strains, we were able to estimate founder haplotype frequencies throughout the genome from the poolseq data and examine haplotype change over time. For the first 16 weeks of the experiment, evolution is extremely repeatable between replicates within a drug, but different between drugs. For all populations the entire genome shows haplotype frequency change, either due to direct or indirect selection acting on variation in the base population, despite high rates of recombination and un-recombined haplotype block sizes of less than 100kb. Haplotype trajectories are dominated by an early purging of the dominant local haplotype, followed by a single replacement haplotype quickly increasing in frequency and then changing very little. The new equilibrated haplotype frequencies occur long before fixation in most cases, supporting a trait-based model of phenotypic evolution. Throughout the genome a consistent pattern of change is that one of the 18 local haplotypes changes a great deal, with the others changing very little. We finally repeat the analysis of the experiment ignoring founder haplotype information, focusing instead on directly ascertained frequency changes at SNPs. When we only employ directly ascertained SNP frequencies many of the above patterns observed are not easily detected.
DOI: 10.5281/zenodo.10846133
title: STORM Data: Transcriptionally active chromatin loops contain both 'active' and 'inactive' histone modifications that exhibit exclusivity at the level of nucleosome clusters

description: The dataset underlying the SMLM STORM super-resolution images of 'Transcriptionally active chromatin loops contain both ‘active’ and ‘inactive’ histone modifications that exhibit exclusivity at the level of nucleosome clusters'. See Biorxiv paper for details on sample preparation: https://www.biorxiv.org/content/10.1101/2023.09.03.555774v1.full.pdf, Pyranose Oxidase STORM buffer on Elyra 7 Zeiss Microscope, processed with Zen Black. Samples are named according to which figures they occur in the above paper.
DOI: 10.5281/zenodo.10846134
title: STORM Data: Transcriptionally active chromatin loops contain both 'active' and 'inactive' histone modifications that exhibit exclusivity at the level of nucleosome clusters

description: The dataset underlying the SMLM STORM super-resolution images of 'Transcriptionally active chromatin loops contain both ‘active’ and ‘inactive’ histone modifications that exhibit exclusivity at the level of nucleosome clusters'. See Biorxiv paper for details on sample preparation: https://www.biorxiv.org/content/10.1101/2023.09.03.555774v1.full.pdf, Pyranose Oxidase STORM buffer on Elyra 7 Zeiss Microscope, processed with Zen Black. Samples are named according to which figures they occur in the above paper.
DOI: 10.6084/m9.figshare.23968044
title: [dataset] Green deserts, but not always: A global synthesis of native woody species regeneration under tropical tree monocultures

description: Datasets of the paper "Green deserts, but not always: A global synthesis of native woody species regeneration under tropical tree monocultures"Review_plantation_regeneration_v_GCB - global datasetArticle_ID - corresponding published articles used to create the global datasetReview_mono_reg_BR_GCB - Brazil case studysp_BR_GCB - Brazil case study species listreview_code - R code for the analysis<br><br>
DOI: 10.6084/m9.figshare.23968044.v1
title: [dataset] Green deserts, but not always: A global synthesis of native woody species regeneration under tropical tree monocultures

description: Datasets of the paper "Green deserts, but not always: A global synthesis of native woody species regeneration under tropical tree monocultures"Review_plantation_regeneration_v_GCB - global datasetReview_mono_reg_BR_GCB - Brazil case studysp_BR_GCB - Brazil case study species listreview code - R code for the analysis<br><br>
DOI: 10.5281/zenodo.10836034
title: Code and Data for Atmospheric River Induced Precipitation in California as Simulated by the Regionally Refined Simple Convective Resolving E3SM Atmosphere Model Version 0

description: Includes the code used for all simulations and grid configurations for the paper entitled "Atmospheric River Induced Precipitation in California as Simulated by the Regionally Refined Simple Convective Resolving E3SM Atmosphere Model Version 0" submitted to Geoscientific Model Development.  Also included are the model output files for all cases and grid configurations used to generate the analysis and figures in the paper.
DOI: 10.5281/zenodo.10836035
title: Code and Data for Atmospheric River Induced Precipitation in California as Simulated by the Regionally Refined Simple Convective Resolving E3SM Atmosphere Model Version 0

description: Includes the code used for all simulations and grid configurations for the paper entitled "Atmospheric River Induced Precipitation in California as Simulated by the Regionally Refined Simple Convective Resolving E3SM Atmosphere Model Version 0" submitted to Geoscientific Model Development.  Also included are the model output files for all cases and grid configurations used to generate the analysis and figures in the paper.
DOI: 10.5517/ccdc.csd.cc2dxl75
title: CCDC 2232007: Experimental Crystal Structure Determination

description: Related Article: Tingting Zhu, Xinling Li, Panpan Yu, Zengkui Zhu, Minjuan Li, Ruiqing Li, Shiguo Han, Huang Ye, Chengmin Ji, Junhua Luo|2024|Chem (Cell Press)|10|882|doi:10.1016/j.chempr.2023.11.010
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hgsmd
title: CCDC 2308124: Experimental Crystal Structure Determination

description: Related Article: Zhen Li, Qiuyan Liao, Aisen Li, Arui Huang, Jiaqiang Wang, Kai Chang, Hehua Li, Pengfei Yao, Cheng Zhong, peidong xie, Jinfeng Wang, Qianqian Li|2024|Chemical Science|15|4364|doi:10.1039/D3SC05533G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hgsnf
title: CCDC 2308125: Experimental Crystal Structure Determination

description: Related Article: Zhen Li, Qiuyan Liao, Aisen Li, Arui Huang, Jiaqiang Wang, Kai Chang, Hehua Li, Pengfei Yao, Cheng Zhong, peidong xie, Jinfeng Wang, Qianqian Li|2024|Chemical Science|15|4364|doi:10.1039/D3SC05533G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.