cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dnb6w6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is BRA.20_1",
 "TaxonKey is Cyatheaceae"
 ]
}

 The dataset includes 25 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004670-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5p5mn5
title: Occurrence Download

description: A dataset containing 26929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Mycteria ibis (Linnaeus, 1766))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 26929 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004671-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7314337
title: Adipose tissue plasticity in pheochromocytoma patients reveals a key role of the splicing machinery in human adipose browning

description: RNA-sequencing counts data from omental adipose tissue from control individuals (C1-3) and patients with pheochromocytoma (P1-4) for whole genes (genes-counts.tsv) and individual isoforms (isoform-counts.tsv). Additional details regarding recruited individuals are available in the associated manuscript.


Tissue fragments (~150 mg) of adipose biopsies from controls and pheochromocytoma patients were homogenized using a metal bead-based mechanical procedure in a TissueLyser® (QIAGEN, Düsseldorf, Germany). Total RNA was isolated from tissue homogenates using a NucleoSpin® RNA kit (Macherey-Nagel, Dueren, Germany) following the manufacturer’s protocol. mRNA was purified from 2 μg of total RNA using oligo-dT beads; it was then fragmented, retrotranscribed with random primers, and subjected to second-strand synthesis to create double-stranded cDNA fragments. Adaptor ligation, purification of 200-base pair cDNA fragments, amplification of the purified fragments, and library preparation were performed as previously reported by our laboratory. Before sequencing, the RNA integrity number (RIN) of each sample was determined using an Agilent Bioanalyzer 2100; samples with RIN ≥ 7.5 were used for RNA-sequencing. The cDNA library quality and quantity were further analyzed as previously described. Libraries yielding satisfactory results were sequenced on an Illumina HiSeq 2000 sequencer (DNAvision, Charleroi, Belgium). The average reads per sample was 45 million; this level of coverage was previously shown to provide sufficient sequencing depth for gene expression quantification and transcript detection. Quality control of reads was performed using FastQC (version 0.11.8; bioinformatics.babraham.ac.uk/projects/fastqc). Gene expression was quantified using Salmon version 1.1.0 with the additional parameters “– seqBias – gcBias – validateMappings”. GENCODE version 31 (GRCh38.p12) was used as the reference genome and indexed using default parameters; this resulted in 175,775 transcripts corresponding to 35,183 genes.
DOI: 10.5281/zenodo.7314338
title: Adipose tissue plasticity in pheochromocytoma patients reveals a key role of the splicing machinery in human adipose browning

description: RNA-sequencing counts data from omental adipose tissue from control individuals (C1-3) and patients with pheochromocytoma (P1-4) for whole genes (genes-counts.tsv) and individual isoforms (isoform-counts.tsv). Additional details regarding recruited individuals are available in the associated manuscript.


Tissue fragments (~150 mg) of adipose biopsies from controls and pheochromocytoma patients were homogenized using a metal bead-based mechanical procedure in a TissueLyser® (QIAGEN, Düsseldorf, Germany). Total RNA was isolated from tissue homogenates using a NucleoSpin® RNA kit (Macherey-Nagel, Dueren, Germany) following the manufacturer’s protocol. mRNA was purified from 2 μg of total RNA using oligo-dT beads; it was then fragmented, retrotranscribed with random primers, and subjected to second-strand synthesis to create double-stranded cDNA fragments. Adaptor ligation, purification of 200-base pair cDNA fragments, amplification of the purified fragments, and library preparation were performed as previously reported by our laboratory. Before sequencing, the RNA integrity number (RIN) of each sample was determined using an Agilent Bioanalyzer 2100; samples with RIN ≥ 7.5 were used for RNA-sequencing. The cDNA library quality and quantity were further analyzed as previously described. Libraries yielding satisfactory results were sequenced on an Illumina HiSeq 2000 sequencer (DNAvision, Charleroi, Belgium). The average reads per sample was 45 million; this level of coverage was previously shown to provide sufficient sequencing depth for gene expression quantification and transcript detection. Quality control of reads was performed using FastQC (version 0.11.8; bioinformatics.babraham.ac.uk/projects/fastqc). Gene expression was quantified using Salmon version 1.1.0 with the additional parameters “– seqBias – gcBias – validateMappings”. GENCODE version 31 (GRCh38.p12) was used as the reference genome and indexed using default parameters; this resulted in 175,775 transcripts corresponding to 35,183 genes.
DOI: 10.17632/zbvnktmy5r.1
title: Day-Ahead Electricity Market Modelling

description: Datasets and sample/mock code for day-ahead electricity market modelling.

Link: github repository.

Url: https://github.com/josephanthonycollins/Day-Ahead-Electricity-Market-Modelling
DOI: 10.15468/dl.92g7h3
title: Occurrence Download

description: A dataset containing 3837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Ceyx pictus (Boddaert, 1783))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 3837 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004672-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14693338
title: SUN-Spot Referring Expressions Dataset

description: SUN-Spot is an annotation dataset for localizing objects in the SUNRGBD (https://rgbd.cs.princeton.edu/) image datasest using spatial referring expressions (REs). SUN-Spot is the only RE dataset which uses RGB-D images. It also contains a greater average number of spatial prepositions and more cluttered scenes than previous RE datasets.
DOI: 10.5281/zenodo.14693339
title: SUN-Spot Referring Expressions Dataset

description: SUN-Spot is an annotation dataset for localizing objects in the SUNRGBD (https://rgbd.cs.princeton.edu/) image datasest using spatial referring expressions (REs). SUN-Spot is the only RE dataset which uses RGB-D images. It also contains a greater average number of spatial prepositions and more cluttered scenes than previous RE datasets.
DOI: 10.15468/dl.ncv5rx
title: Occurrence Download

description: A dataset containing 8294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (South Africa, Lesotho, Eswatini)",
 "TaxonKey is one of (Calendulauda albescens (Lafresnaye, 1839))",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950",
 "OccurrenceStatus is Present",
 "DistanceFromCentroidInMeters is greater than or equal to 2000"
 ]
}

 The dataset includes 8294 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004673-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8z7pxn
title: Occurrence Download

description: A dataset containing 834807 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lolium perenne L."
 ]
}

 The dataset includes 834807 records from 3561 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004578-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.he6mb9
title: Occurrence Download

description: A dataset containing 17125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bahamas",
 "DatasetKey is The New York Botanical Garden Herbarium (NY)"
 ]
}

 The dataset includes 17125 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137063-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qk3kvm
title: Occurrence Download

description: A dataset containing 622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rodentia",
 "Country is Iceland"
 ]
}

 The dataset includes 622 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021324-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqxe7z
title: Occurrence Download

description: A dataset containing 11054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Grallaria guatimalensis Prevost & Des Murs, 1842"
 ]
}

 The dataset includes 11054 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160716-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.agekf8
title: Occurrence Download

description: A dataset containing 19974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rodentia",
 "Country is Italy"
 ]
}

 The dataset includes 19974 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021326-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g929gx
title: Occurrence Download

description: A dataset containing 218 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is United States of America",
 "DatasetKey is LSUMZ Birds Collection",
 "GadmGid is USA.44_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is May",
 "PublishingOrg is c361e830-181e-11da-9544-b8a03c50a862"
 ]
}

 The dataset includes 218 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137064-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94b66b
title: Occurrence Download

description: A dataset listing the 207 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Geometry POLYGON((-117.20119 44.5173,-117.03818 44.13712,-117.04031 41.95672,-111.06115 42.03716,-111.07456 44.5173,-111.27565 44.62455,-111.3829 44.75862,-111.53037 44.65137,-111.75827 44.5173,-112.33474 44.53071,-112.52242 44.45027,-112.75033 44.49049,-112.81736 44.34302,-113.04527 44.49049,-113.01845 44.7318,-113.27317 44.90608,-113.95689 45.72386,-114.30545 45.50936,-114.56896 45.52725,-114.35907 46.72933,-115.54337 47.36873,-115.74668 47.40809,-115.73479 47.71719,-116.04389 47.97874,-116.07956 49.00115,-117.0441 49.00287,-117.07984 46.3468,-116.96073 46.03712,-116.47725 45.65683,-116.81582 45.03487,-116.85381 44.89242,-117.01525 44.78035,-117.20119 44.5173))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 207 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295032-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ksjec
title: Occurrence Download

description: A dataset containing 651713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Lepus californicus Gray, 1837, Chironectes minimus (Zimmermann, 1780), Myotis Kaup, 1829, Myotis evotis (H.Allen, 1864), Myotis albescens (E.Geoffroy, 1806), Lasionycteris noctivagans (Le Conte, 1831), Euderma maculatum (J.A.Allen, 1891))"
 ]
}

 The dataset includes 651713 records from 2314 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160684-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ymdfa
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Columnea argentea Griseb."
 ]
}

 The dataset includes 21 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152889-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb2z1o
title: Occurrence Download

description: A dataset containing 739606 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 "Country is Peru",
 "Year 1950-2019",
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 739606 records from 179 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005067-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fq2qj2
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amazona ochrocephala (Gmelin, 1788)"
 ]
}

 The dataset includes 175 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219265-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8mf3e8
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis yui T.S.Ying"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056857-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aqtyla
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Claudius angustatus Cope, 1865"
 ]
}

 The dataset includes 263 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003201-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swz2du
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Digitaria clavitricha R.W.Pohl"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152890-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek8mr2
title: Occurrence Download

description: A dataset listing the 86 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Hordeum L."
 ]
}

 The dataset's 86 records were derived from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238296-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnde6j
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Begonia rizalensis Merr."
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056866-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3r6am
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((10.76111 61.6943,10.78308 61.6943,10.78308 61.75675,10.76111 61.75675,10.76111 61.6943))",
 "Geometry POLYGON((10.47546 61.20071,11.55212 61.20071,11.55212 61.86055,10.47546 61.86055,10.47546 61.20071))"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Rubus chamaemorus L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 140 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010248-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kynfy
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Damburneya parvissima (Lundell) Trofimov"
 ]
}

 The dataset includes 32 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152891-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7z8ouh
title: Occurrence Download

description: A dataset containing 7107 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ricinocarpos Desf."
 ]
}

 The dataset includes 7107 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033567-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xa945k
title: Occurrence Download

description: A dataset containing 178677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)"
 ]
}

 The dataset includes 178677 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083675-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w636ie
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Caesalpinia spinosa (Molina) Kuntze",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 58 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010961-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sa993y
title: Occurrence Download

description: A dataset containing 9440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Upupa epops Linnaeus, 1758",
 "Year 1998-2021"
 ]
}

 The dataset includes 9440 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238289-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xm966n
title: Occurrence Download

description: A dataset containing 1666 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artemisia tanacetifolia L."
 ]
}

 The dataset includes 1666 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017535-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7bymb
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton buxifolius (Baill.) Müll.Arg."
 ]
}

 The dataset includes 40 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152892-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87pj4z
title: Occurrence Download

description: A dataset containing 2674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Anser caerulescens (Linnaeus, 1758)",
 "Year 2011-2018"
 ]
}

 The dataset includes 2674 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238286-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.itqzzs
title: Occurrence Download

description: A dataset containing 257250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Geometry POLYGON((-78.15674 -19.10365,-70.5542 -19.10365,-70.5542 -13.49647,-78.15674 -13.49647,-78.15674 -19.10365))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 257250 records from 298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010348-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k79gxr
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater Lamprey Survey Data"
 ]
}

 The dataset includes 772 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005938-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.