cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pq3376q/4
title: EnvTur_def

description: Vegan input file including environmental information for all the studied locations. Location codes are shown in Table 1 of the manuscript.
DOI: 10.5061/dryad.pq3376q/5
title: Description of the files deposited in Dryad Prado et al 2018

description: Description of the files deposited in Dryad Prado et al 2018 "Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus)"
DOI: 10.5061/dryad.q609s/1
title: qPCR results eDNA

description: file contains qPCR results for 2 experiments: (1) abiotic and biotic factors (2) inhibitors
DOI: 10.5061/dryad.t2j2r/1
title: Bellucia.Phen.Mastercopy.Upload

description: This data file contains the monthly phenology data for individual trees. Observations are clustered by month, plot, location, etc.
DOI: 10.5061/dryad.v5s0j/1
title: MCD15A2.2003_2015.Africa.V02.Animation.gif

description: Data S2: LAI animation for years 2003 to 2015 contains aggregate, woody and partitioned LAI mosaicked for Sub-Saharan Africa, presented in gif format. The animation shows the estimates of aggregate LAI and partitioned woody and herbaceous LAI estimates for each 8-day interval during the entire 13-year time-period, Filename: MCD15A2.2003_2015.Africa.V02.Animation.gif.zip. An online version of the animation can be accessed here: https://globalmonitoring.sdstate.edu/content/modis-lai-partitioning.
DOI: 10.5061/dryad.v5s0j/2
title: Average Aggregate Leaf Area Index

description: MODIS Aggregate ("total") Leaf Area Index for sub-Saharan Africa
DOI: 10.17632/3ct9wxcg7c.1
title: Data for: Dynamic Reaction Cell Inductively Couple Plasma- Mass Spectrometry optimization for seawater analysis

description: The additional material consists in several tables with the raw data of applied experimental statistical designs, the coefficients and the probability obtained after the statistical treatment.
DOI: 10.17632/3ct9wxcg7c.2
title: Data for: Dynamic Reaction Cell Inductively Couple Plasma- Mass Spectrometry optimization for seawater analysis

description: The additional material consists in several tables with the raw data of applied experimental statistical designs, the coefficients and the probability obtained after the statistical treatment.
DOI: 10.17632/6fdnk8pw37.1
title: Data for: Oxygen isotope reservoirs in the outer asteroid belt inferred from oxygen isotope systematics of chondrules, isolated forsterite and olivine grains in Tagish Lake-type carbonaceous chondrites, WIS 91600 and MET 00432

description: supplementary figure for paper
DOI: 10.17632/6mwjvgfd47.1
title: Data for: Phylogenomic analysis of Fundulidae (Teleostei: Cyprinodotiformes) using RNA-sequencing Data

description: These files provide the assembled, concatenated and aligned RNAseq sequences for sixteen ingroup fundulidae species and referenced outgroups for 152 genes. Included are the FASTA files, nexus files, and partitions associated with the concatenated sequences.
DOI: 10.17632/f7y5kh82mp.1
title: Data for: Fundamental Relations of Mineral Specific Magnetic Carriers for Paleointensity Determination

description: Magnetic acquisition data that relate to specific minerals and shapes
DOI: 10.17632/grngv7fmfg.1
title: Data for: Coupling controlled environmental forcing and Transient Plane Source method: an innovative thermal characterization procedure for building insulationmaterials

description: this package includes all the LateX files which we have been trying to upload through the system with no success.
DOI: 10.17632/grngv7fmfg.2
title: Data for: Coupling controlled environmental forcing and Transient Plane Source method: an innovative thermal characterization procedure for building insulationmaterials

description: this package includes all the LateX files which we have been trying to upload through the system with no success.
DOI: 10.17632/p6j9tm66nm.1
title: Data for: Dynamic correlations in the highly dilute 2D electron liquid: loss function, critical wave vector and analytic plasmon dispersion

description: Here the Supplementary Material of our Paper "Dynamic correlations in the highly dilute 2D electron liquid: loss function, critical wave vector and analytic plasmon dispersion" is presented.
DOI: 10.17632/rcxrpd8zwv.1
title: Data for: Palynofacies assemblages reflect sources of organic matter in New Zealand fjords

description: Sheet 1:sample metadata Sheet 2: palynofacies counts Sheet 3: dinocyst counts Sheet 4: miospore counts
DOI: 10.17632/rt2y66b3hb.1
title: Data for: A yolk shell Fe3O4 @PA-Ni@Pd/Chitosan nanocomposite -Modified carbon ionic liquid electrode as a New Sensor for the Sensitive Determination of fluconazole in Pharmaceutical Preparations and Biological Fluids

description: In this study, a versatile method was used to synthesize Ni@Pd core–shell nanoparticles, immobilized on Fe3O4@polyaniline yolk–shell composites (Fe3O4@PA) as a novel electrode modifier. Up to now, application of this nanoparticles have not been reported. The constructed nanocomposite and Chitosan were utilized for the modification of carbon ionic liquid electrode (CILE) for high sensitive determination of fluconazole in biological and pharmaceutical samples. By using response surface methodology and input data, the graphical relationship between responses and variables is obtained and the multiple regression analysis can be carried out.
DOI: 10.17632/tcxd2h5y8b.1
title: Data for: Oxygen isotope reservoirs in the outer asteroid belt inferred from oxygen isotope systematics of chondrules, isolated forsterite and olivine grains in Tagish Lake-type carbonaceous chondrites, WIS 91600 and MET 00432

description: Supplementary date for papaer
DOI: 10.5061/dryad.0vm37/1
title: Gmm.final.pep

description: Amino acid FASTA format file of all gene coding sequences, with or without alternative splice variants
DOI: 10.5061/dryad.0vm37/2
title: Gmm.final.cds

description: Nucleotide FASTA format file of all gene coding sequences, with or without alternative splice variants
DOI: 10.5061/dryad.0vm37/3
title: Gmm.final.gff

description: GFF3 format representation of all mRNA sequences (UTR, CDS). Genomic coordinates are relative to the reference
DOI: 10.5061/dryad.0vm37/4
title: all.repeat.gff

description: repeat gff
DOI: 10.5061/dryad.17m23/1
title: Measurement Data

description: Created using Excel. See Readme for column definitions. Each row corresponds to one specimen.
DOI: 10.5061/dryad.17m23/2
title: Preserved and Live Bluegill

description: Measurements from preserved and live Bluegill. Each row represents a fish. See readme for column descriptions.
DOI: 10.5061/dryad.17m23/3
title: Statistical Parameters

description: Excel workbook with ANOVA/ANCOVA tables generated by analysis script.
DOI: 10.5061/dryad.17m23/4
title: analysis script

description: R script used to conduct statistical analysis for study
DOI: 10.5061/dryad.24t5j04/1
title: Lindenmayer salvage logging birds

description: Data from an 8-year study of bird responses across a spectrum of disturbance types in Australian Mountain Ash (Eucalyptus regnans) forests following wildfires in 2009. We extracted data for 88 plots from three studies within the Victorian Tall Eucalypt Forest Plot Network. The plots had varying degrees of disturbance in terms of fire and logging. We established three survey points in each plot and recorded bird species present at each survey point over the period 2009 to 2016 on one or more occasions.
DOI: 10.5061/dryad.350cd31/1
title: Capture-recapture histories of individual European adders (Vipera berus) from a large population in northern Belgium

description: Data files to be used as import in program MARK to obtain annual and age-specific estimates of capture and survival probabilities
DOI: 10.5061/dryad.39272/1
title: FEA data

description: FEA data xls
DOI: 10.5061/dryad.39272/10
title: Neanderthal_Airway_Inspiration

description: CFD [computational fluid dynamics data] for Neanderthal_Airway_Inspiration [csv format]
DOI: 10.5061/dryad.39272/3
title: African_American_Airway_Expiration

description: Computational Fluid Dynamics data - African_American_Airway_Expiration [csv format]
DOI: 10.5061/dryad.39272/4
title: African_American_Airway_Inspiration

description: CFD [computational fluid dynamics data] for African_American_Airway_Inspiration [csv format]
DOI: 10.5061/dryad.39272/5
title: Broken_Hill_1_Expiration

description: CFD [computational fluid dynamics data] for Broken Hill 1_expiration [csv format]
DOI: 10.5061/dryad.39272/6
title: Broken_Hill_1_Inspiration

description: CFD [computational fluid dynamics data] for Broken Hill_1_Inspiration [csv format]
DOI: 10.5061/dryad.39272/7
title: European_American_Airway_Expiration

description: CFD [computational fluid dynamics data] for European_American_Airway_Exspiration [csv format]
DOI: 10.5061/dryad.584m3/1
title: Unconstrained example

description: Nexus file containing the DNA alignment from the unconstrained phylogenetic example.
DOI: 10.5061/dryad.584m3/2
title: Constrained example

description: Nexus file containing the DNA alignment for the constrained phylogenetic example.
DOI: 10.5061/dryad.67r06s0/1
title: Pasteuria_ramosa_genotypes

description: Tab-delimited text file containing sample identification information and microsatellite genotypes used in the corresponding publication. The first row contains descriptive titles for each column. The first column contains entire unique sample identifier. The second column contains the locality of sample origin. The third column contains the Daphnia magna host clone. The fourth column contains the "resistotype" as defined in the paper. The fifth column contains the locality number code. Columns 6-17 contain genotype information (alleles) for each of the 12 microsatellite loci used in this study.
DOI: 10.5061/dryad.74839/3
title: Sporogony data

description: Sporozoite prevalence over time by replicate cup for each temperature and experimental block.
DOI: 10.5061/dryad.74839/4
title: Survival data

description: Survival data for each replicate cup in each temperature and experimental block.
DOI: 10.5061/dryad.9kk0748/1
title: Arthrocen & OA (PlosOne)

description: Raw data of pain as assessed by weight bearing and vonFrey hair algesiometry. Inflammation assess by joint oedema.
DOI: 10.5061/dryad.c4k2n06/1
title: Wilson2018Data
DOI: 10.5061/dryad.g84p3/1
title: Tooth shape ratios (.xlsx spreadsheet)

description: Tooth shape ratios from the dentary and premaxilla jawbones of blennies. Tooth_ratios tab has tooth shape ratios calculated from linear measurements of blenny teeth. Log_tooth_ratios has log transformed ratios.
DOI: 10.5061/dryad.h14r5/1
title: deJong&Saastamoinen_Cold Tolerance_data_2018

description: In this file are the development time, body mass, chill coma recovery and candidate gene SNP genotype data for all individuals used in the data analyses. Separate file is provided to explain in detail the column variables
DOI: 10.5061/dryad.hq8m7/1
title: Supplementary Information

description: ZIP file containing the 3D bone segments, the model definitions, and the movie files generated by the simulator.
DOI: 10.5061/dryad.j2c24/1
title: Hapmap file

description: Hapmap file
DOI: 10.5061/dryad.j2c24/2
title: R code

description: R code
DOI: 10.5061/dryad.jv853v1/1
title: RAD-seq data for Porites coral species

description: All the demultiplexed forward read data files (RADseq) for Porites coral species used in this publication. The barcode and parameter files used for processing in iPyrad are also included.
DOI: 10.5061/dryad.k55hh8f/1
title: Input data file for classification Random Forest tutorial in R
DOI: 10.5061/dryad.k55hh8f/2
title: R script for classification Random Forest tutorial
DOI: 10.5061/dryad.k55hh8f/3
title: Input data file for regression Random Forest tutorial in R
DOI: 10.5061/dryad.k55hh8f/4
title: R script for regression Random Forest tutorial
DOI: 10.5061/dryad.k55hh8f/5
title: Input data files and results of simulations to quantify the effectiveness of a method to correct for population stratification
DOI: 10.5061/dryad.k55hh8f/6
title: R scripts for simulations to quantify the effectiveness of a method to correct for population stratification
DOI: 10.5061/dryad.m060k/1
title: dataset
DOI: 10.5061/dryad.m96r3/21
title: Supplemental Figure 8

description: Mean of the Akaike weights for constant-rate models (black), time-dependent models (light blue), and environment-dependent models (colors correspond to Figure 1) across all environment-dependent λ trees with the same αλ (see Figure 4).
DOI: 10.5061/dryad.m96r3/22
title: Supplemental Figure 9

description: Effect of different characteristics on the rate of recovery of environmental curves. The ability to correctly recover the simulated model at different values of αλ for (a) abiotic and biotic variables (see Figure 4) and (b) linear and non-linear environmental curves. (c) Barplots for the slope and intercept for regression models fit to autocorrelation functions for multiple lag-times for each environmental curve; the correlation, slope, and degrees of freedom estimated for generalized least squares (GLS) linear fits to each environmental curve; and the average rate of change of each environmental variable with respect to time. Bars are colored according to panel a.
DOI: 10.5061/dryad.m96r3/23
title: Supplemental Figure 10

description: Rate of recovery for trees simulated with an exponential de- pendency of μ on different paleoenvironments, X, (μ = 0.02e^{αμX(t)}) for varying values of αμ and constant λ (λ0 = 0.15). (Top) Simulated trees fitted with models with an exponential dependency of μ on the paleoenvironment and a constant λ. (Bottom) Simulated trees fitted with models with an exponential dependency of λ on the paleoenvironment and a constant μ. Colors correspond to Figure 1.
DOI: 10.5061/dryad.m96r3/24
title: Supplemental Figure 11

description: Environment-dependency in Ruminantia computed from the Ruminantia supertree (11). AICc support for different environment-dependent models, a constant-rate birth-death model, and an exponential time-dependent model (without extinction) on a distribution of 5000 posteriorly sampled probabilities of the Ruminantia supertree. All environment-dependent models have an exponential dependency on the environmental variable. Colors correspond to Figure 1.
DOI: 10.5061/dryad.n0b8m/1
title: Flight trajectories of fruit flies and mosquitoes in a wind tunnel.

description: This data file is a MySQL database file which must be uploaded to a MySQL database management system (DBMS) (e.g., via the MAMP installation: http://localhost:8888/MAMP/?language=English, as was used in the associated manuscript). Once you have installed a MySQL DBMS on your machine, make a new database called “wind_tunnel_db”. To populate this database using the data file, first download all of the data files and join them together using:

cat wind_tunnel_db_* &gt; wind_tunnel_db.sql

Then run the following command to populate the wind_tunnel_db MySQL database with the result.

/path/to/mysql -uroot -proot wind_tunnel_db &lt; /path/to/wind_tunnel_db.sql

replacing the paths and username/passwords as appropriate. It will take several minutes since it is a large file.

The database contains several tables, which are mostly self explanatory. The key tables of interest are the “experiment” table, which lists the 4 experiments contained in this data set, the “timepoint” table, which contains the position, velocity, etc., of every fly/mosquito at every measured time point, and the “trajectory” table, which indicates which set of time points correspond to which individual trajectories. Other useful tables that have been pre-populated are the “crossing” table, which specifies trajectory segments corresponding to each plume crossing, and the “crossing_group” table, which groups sets of crossings together according to experiment and crossing identification criteria.

The code that interacts with this database and recreates the figures in the associated manuscript is contained at https://github.com/rkp8000/wind_tunnel.
DOI: 10.5061/dryad.n0b8m/2
title: Part 2
DOI: 10.5061/dryad.pj5sf05/1
title: Microsatellite data

description: Data file with male, female and clutch genotypes.
DOI: 10.5061/dryad.v5s0j/3
title: Woody Leaf Area Index

description: 8-day Average Partitioned woody leaf Area Index for sub-Saharan Africa for years 2003-2015
DOI: 10.5061/dryad.v5s0j/4
title: Herbaceous Leaf Area Index

description: 8-day average partitioned herbaceous leaf Area Index for sub-Saharan Africa for years 2003-2015
DOI: 10.5061/dryad.v5s0j/5
title: Files Metadata

description: Metadata and R-script for processing the files
DOI: 10.5061/dryad.vj2s888/1
title: Data from Morales-Briones et al New Phylogenomics of Lachemilla New Phythologist
DOI: 10.17632/p6j9tm66nm.2
title: Data for: Dynamic correlations in the highly dilute 2D electron liquid: loss function, critical wave vector and analytic plasmon dispersion

description: Here the Supplementary Material of our Paper "Dynamic correlations in the highly dilute 2D electron liquid: loss function, critical wave vector and analytic plasmon dispersion" is presented.
DOI: 10.17632/yf5wbtxnmg.1
title: Data for: Ligand-Based Computer Aided Drug Design Reveals New Tropomycin Receptor Kinase A (TrkA) Inhibitors.

description: The following represent the basic procedure in our QSAR workflow plus provided is the Thermofisher screening results against TrkA of our compounds
DOI: 10.5061/dryad.0vm37/10
title: IPR2GO.result

description: Functional annotation(IPR2GO)
DOI: 10.5061/dryad.0vm37/11
title: KEGG.result

description: Functional annotation(KEGG)
DOI: 10.5061/dryad.0vm37/12
title: Swissprot.result

description: Functional annotation(Swissprot)
DOI: 10.5061/dryad.0vm37/5
title: Gnetum.final.part02

description: genome fa file (which was compressed into four files)
DOI: 10.5061/dryad.0vm37/6
title: Gnetum.final.part03

description: genome fa file (which was compressed into four files)
DOI: 10.5061/dryad.0vm37/7
title: Gnetum.final.part04

description: genome fa file (which was compressed into four files)
DOI: 10.5061/dryad.0vm37/8
title: Gnetum.final.part01

description: genome fa file (which was compressed into four files)
DOI: 10.5061/dryad.0vm37/9
title: InterPro.result

description: Functional annotation(InterPro)
DOI: 10.5061/dryad.218p0v2/1
title: learning about landscapes of fear data

description: Excel file containing data on foraging rate of tadpoles collected during manipulative behavioural experiments
DOI: 10.15468/dl.rpr75m
title: Occurrence Download

description: A dataset containing 6449 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Cauchas rufimitrella (Scopoli, 1763)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 6449 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088003-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vfwjas
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cinnamomum cassia Nees ex Blume"
 ]
}

 The dataset includes 60 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088005-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufcsdm
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Myanmar, India)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron stewartianum Diels"
 ]
}

 The dataset includes 149 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088004-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gw8qx4
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sitophilus zeamais Motschulsky & V.de, 1855",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088006-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhh8eh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sarcohyla crassa (Brocchi, 1877))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088007-240626123714530/datasets/export for details.
DOI: 10.15468/dl.cyfm2n
title: Occurrence Download

description: A dataset containing 22655 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Adscita statices (Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 22655 records from 326 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088008-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.