cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21310985.v1
title: Additional file 4 of Pheromone sensing in Drosophila requires support cell-expressed Osiris 8

description: Additional file 4: Table S1. Analysis of Ir and Or subsystem-enriched genes. Annotations of genes enriched in the Ir (magenta) and Or (green) subsystems, as defined as those showing a &gt;4-fold differential expression between amos and ato mutant antennae. This arbitrary cut-off captures all of the known chemosensory receptors expressed in the two subsystems. The dataset was cleaned from the original microarray data (GSE183763) by updating gene names and removing duplicate gene entries and those corresponding to transposons. Neuronal/non-neuronal expression is a qualitative assessment based upon the Fly Cell Atlas antennal dataset [29] and/or RNA FISH data for chemosensory receptors [17–19]: “1” = expressed; “0” = not expressed; empty cells indicate robust expression was not detected in either cell type (which may reflect sub-threshold expression level). Breadth of expression provides an approximate categorization of cell-type specific and ubiquitously expressed genes within each olfactory subsystem, based upon the qualitative assessment of the number of clusters in the Fly Cell Atlas antennal dataset in which a gene is detected: “1” = 1 cluster; “2” = 2-5 clusters; “3” = &gt;5 clusters.
DOI: 10.6084/m9.figshare.21310988.v1
title: Additional file 5 of Pheromone sensing in Drosophila requires support cell-expressed Osiris 8

description: Additional file 5: Table S2. Definition of Ir and Or subsystem support cell populations. Populations were numbered arbitrarily, based upon the Fly Cell Atlas antennal cell cluster representation [29]; it is likely that they can be subclustered further. The “I” and “O” categorization was defined post-hoc, based upon a qualitative assessment of their preferential expression of Ir subsystem- or Or subsystem-enriched genes (from Additional file 4: Table S1; undetected genes were excluded). The I12 and I13 clusters express Obp84a, which is thought to be expressed in thecogen cells based upon exclusive co-expression with a nompA promoter transgenic reporter [54]. Endogenous nompA transcripts are detected consistently (albeit weakly) in I12 but only very sparsely in I13.
DOI: 10.6084/m9.figshare.21310988
title: Additional file 5 of Pheromone sensing in Drosophila requires support cell-expressed Osiris 8

description: Additional file 5: Table S2. Definition of Ir and Or subsystem support cell populations. Populations were numbered arbitrarily, based upon the Fly Cell Atlas antennal cell cluster representation [29]; it is likely that they can be subclustered further. The “I” and “O” categorization was defined post-hoc, based upon a qualitative assessment of their preferential expression of Ir subsystem- or Or subsystem-enriched genes (from Additional file 4: Table S1; undetected genes were excluded). The I12 and I13 clusters express Obp84a, which is thought to be expressed in thecogen cells based upon exclusive co-expression with a nompA promoter transgenic reporter [54]. Endogenous nompA transcripts are detected consistently (albeit weakly) in I12 but only very sparsely in I13.
DOI: 10.6084/m9.figshare.21311000.v1
title: Additional file 9 of Pheromone sensing in Drosophila requires support cell-expressed Osiris 8

description: Additional file 9: Data S1. Gene ontology (GO) term analyses of Or and Ir subsystem-enriched genes. Enriched GO terms for Or subsystem genes (&gt;2-fold more highly expressed in ato versus amos antennae from the microarray analysis) and Ir subsystem genes (&gt;2-fold more highly expressed in amos versus ato antennae), organized by ontology (Process, Function, Component) on different worksheets. Data represent the output from GOrilla [68], including the GO term and gene lists, enrichment terms and statistical analyses (see the bottom of the first worksheet for the definitions of values). Below each table is the graphical visualization of the hierarchy of enriched GO terms (from GOrilla), to emphasize the statistically significant, enriched nodes.
DOI: 10.6084/m9.figshare.21311000
title: Additional file 9 of Pheromone sensing in Drosophila requires support cell-expressed Osiris 8

description: Additional file 9: Data S1. Gene ontology (GO) term analyses of Or and Ir subsystem-enriched genes. Enriched GO terms for Or subsystem genes (&gt;2-fold more highly expressed in ato versus amos antennae from the microarray analysis) and Ir subsystem genes (&gt;2-fold more highly expressed in amos versus ato antennae), organized by ontology (Process, Function, Component) on different worksheets. Data represent the output from GOrilla [68], including the GO term and gene lists, enrichment terms and statistical analyses (see the bottom of the first worksheet for the definitions of values). Below each table is the graphical visualization of the hierarchy of enriched GO terms (from GOrilla), to emphasize the statistically significant, enriched nodes.
DOI: 10.6084/m9.figshare.21311052
title: Additional file 1 of Individual and organizational features of a favorable work environment in nursing homes: a cross-sectional study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.21311052.v1
title: Additional file 1 of Individual and organizational features of a favorable work environment in nursing homes: a cross-sectional study

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.21311061
title: Additional file 2 of Multiomic analysis of papillary thyroid cancers identifies BAIAP2L1-BRAF fusion and requirement of TRIM25, PDE5A and PKCδ for tumorigenesis

description: Additional file 2: Suppl. Table 1. List of differentially expressed RNAs identified in the RNAseq analysis of patients #14, #15, #17 and #21. Differentially expression of protein-coding RNAs are highlighted in the second sheet.
DOI: 10.6084/m9.figshare.21311061.v1
title: Additional file 2 of Multiomic analysis of papillary thyroid cancers identifies BAIAP2L1-BRAF fusion and requirement of TRIM25, PDE5A and PKCδ for tumorigenesis

description: Additional file 2: Suppl. Table 1. List of differentially expressed RNAs identified in the RNAseq analysis of patients #14, #15, #17 and #21. Differentially expression of protein-coding RNAs are highlighted in the second sheet.
DOI: 10.6084/m9.figshare.21311064
title: Additional file 3 of Multiomic analysis of papillary thyroid cancers identifies BAIAP2L1-BRAF fusion and requirement of TRIM25, PDE5A and PKCδ for tumorigenesis

description: Additional file 3: Suppl. Table 2. List of thyroid-related factors. Based on the literature, a panel of thyroid-related factors were selected.
DOI: 10.6084/m9.figshare.21311064.v1
title: Additional file 3 of Multiomic analysis of papillary thyroid cancers identifies BAIAP2L1-BRAF fusion and requirement of TRIM25, PDE5A and PKCδ for tumorigenesis

description: Additional file 3: Suppl. Table 2. List of thyroid-related factors. Based on the literature, a panel of thyroid-related factors were selected.
DOI: 10.6084/m9.figshare.21311067
title: Additional file 4 of Multiomic analysis of papillary thyroid cancers identifies BAIAP2L1-BRAF fusion and requirement of TRIM25, PDE5A and PKCδ for tumorigenesis

description: Additional file 4: Suppl. Table 3. Quantitative mass spectrometry analysis of normal, tumor and metastasis tissue of patients #14, #15, #17 and #21. Proteins exclusively detected in healthy tissue or malignant tissue are highlights in the second excel sheet.
DOI: 10.6084/m9.figshare.21311067.v1
title: Additional file 4 of Multiomic analysis of papillary thyroid cancers identifies BAIAP2L1-BRAF fusion and requirement of TRIM25, PDE5A and PKCδ for tumorigenesis

description: Additional file 4: Suppl. Table 3. Quantitative mass spectrometry analysis of normal, tumor and metastasis tissue of patients #14, #15, #17 and #21. Proteins exclusively detected in healthy tissue or malignant tissue are highlights in the second excel sheet.
DOI: 10.48425/0077746
title: V_rodents_cameratraps_pilot

description: Camera trapping data from a pilot study in 2014-2015, targeting small mammals on the Varanger peninsula. A long-term dataset was started in 2015, and those data are in a separate dataset. The dataset includes four files. * One readme file describing the column names of the other files (_readme.pdf) * One coordinate file with coordinates of all sites (_coordinates.txt) * One file with metadata for each image (_metadata_2015.txt) * One file with data on presence absence of small mammals and image quality (_classification_2015.txt).
DOI: 10.21227/pfzr-zm45
title: Bioelectrical signals use in videogames for evaluation purposes

description: This dataset contains information about published papers on how biological signals (ECG, EEG, EDA and MG + eye-tracking) are being used and collected in the field of video games. This dataset reflects the information published including the choice of signals, the devices used to collect them (e.g., wearables), the purposes for which they are collected, and the main results reported from their use.
DOI: 10.25442/hku.18623522.v5
title: The Belt and Road Initiative on Twitter: An Annotated Dataset

description: This repository stores a collection of 500,711 posts (tweets) and 714,794 reposting threads (retweets) related to the BRI on Twitter. The dataset was collected through Twitter APIs using the terms: “belt and road”, “one belt one road”, ‘new silk road”, “maritime silk road”, and “silk road economic belt”, which includ the phrases and their hashtag format to download data. The time series of the dataset is from 7 September 2013 to 30 November 2021. Furthermore, the dataset has been annotated in terms of languages, sentiment, and geopolitical entities by using text analytics in language detection, neural machine translation, lexicon-based sentiment analysis, and web automation. To facilitate insights discovery, we classified the dataset into four databases in which can be analyzed separately and used by researchers related to various fields, such as social science, network science, sociology, and others to study the dynamic activities on Twitter, trends on keywords, users’ characteristics, as well as the social networks on citing patterns. <br> All programming scripts required to reproduce the dataset are available at: https://github.com/edmangog/The-BRI-on-Twitter
DOI: 10.5517/ccdc.csd.cc2807bw
title: CCDC 2085597: Experimental Crystal Structure Determination

description: Related Article: Tanuja Kumari, Ramhari Meena, Lopamudra Giri, Bipul Sarma, Priyanka R. Angarkhe, Jesni M. Jacob, Jagnyaseni Tripathy, Jyoti Joshi, Mahesh Kumar Ravva, Rakesh K. Behera, Swagat K. Mohapatra|2022|J.Mol.Struct.|1273|134253|doi:10.1016/j.molstruc.2022.134253
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28kx81
title: CCDC 2102583: Experimental Crystal Structure Determination

description: Related Article: Badri Z Momeni, Soheila Karimi, Jan Janczak|2022|J.Mol.Struct.|1273|134245|doi:10.1016/j.molstruc.2022.134245
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28kx92
title: CCDC 2102584: Experimental Crystal Structure Determination

description: Related Article: Badri Z Momeni, Soheila Karimi, Jan Janczak|2022|J.Mol.Struct.|1273|134245|doi:10.1016/j.molstruc.2022.134245
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bkxxr
title: CCDC 2162185: Experimental Crystal Structure Determination

description: Related Article: Xu-Min Cai, Xuedan Zhang, Yuting Lin, Zhenguo Tang, Shenlin Huang|2022|J.Mol.Struct.|1272|134230|doi:10.1016/j.molstruc.2022.134230
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c48xq
title: CCDC 2178863: Experimental Crystal Structure Determination

description: Related Article: Atousa Goudarzi, Maryam Saeidifar, Kioumars Aghapoor, Farshid Mohsenzadeh, Dieter Fenske, Olaf Fuhr, Mitra Ghassemzadeh|2022|J.Mol.Struct.|1272|134224|doi:10.1016/j.molstruc.2022.134224
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c48yr
title: CCDC 2178864: Experimental Crystal Structure Determination

description: Related Article: Atousa Goudarzi, Maryam Saeidifar, Kioumars Aghapoor, Farshid Mohsenzadeh, Dieter Fenske, Olaf Fuhr, Mitra Ghassemzadeh|2022|J.Mol.Struct.|1272|134224|doi:10.1016/j.molstruc.2022.134224
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c48zs
title: CCDC 2178865: Experimental Crystal Structure Determination

description: Related Article: Atousa Goudarzi, Maryam Saeidifar, Kioumars Aghapoor, Farshid Mohsenzadeh, Dieter Fenske, Olaf Fuhr, Mitra Ghassemzadeh|2022|J.Mol.Struct.|1272|134224|doi:10.1016/j.molstruc.2022.134224
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch232
title: CCDC 2189223: Experimental Crystal Structure Determination

description: Related Article: Shi-Li Tang, De-Jun Li, Feng-Jie Ma, Lu-Lin Zhang, Bo Lian, Yuan-Zheng Cheng, Li-Ping Zhang|2022|J.Mol.Struct.|1272|134229|doi:10.1016/j.molstruc.2022.134229
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch254
title: CCDC 2189225: Experimental Crystal Structure Determination

description: Related Article: Shi-Li Tang, De-Jun Li, Feng-Jie Ma, Lu-Lin Zhang, Bo Lian, Yuan-Zheng Cheng, Li-Ping Zhang|2022|J.Mol.Struct.|1272|134229|doi:10.1016/j.molstruc.2022.134229
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21311121.v1
title: Supplementary Material for: Assessment of the Anastomosis after Radical Prostatectomy: A Review of Available Diagnostic Methods

description: <b><i>Introduction:</i></b> After radical prostatectomy, many institutions perform cystography to exclude vesicourethral anastomotic leakage before removing a urethral catheter. We reviewed diagnostic methods to exclude leakage compared to the reference standard cystography. <b><i>Methods:</i></b> We performed systematic literature review to summarize the published options and outcomes for assessment of vesicourethral anastomotic leakage after radical prostatectomy. <b><i>Results:</i></b> Of 2,137 publications, 45 full-text manuscripts underwent full-text screening, of which 9 studies contributing 919 patients were included. Seven studies described ultrasound-guided assessment (four transrectal, two transabdominal, one transperineal). Two further studies described the use of computerized tomography. Ultrasound-guided assessment of the anastomosis after radical prostatectomy shows promising agreement with cystography. Computerized tomography-aided assessment of vesicourethral anastomosis detects more leakages; however, clinical consequences are not defined. <b><i>Conclusion:</i></b> Further studies are warranted to (1) identify men at risk of anastomotic leakage who should undergo assessment before trial without a catheter and (2) provide prospective comparisons of different ultrasound-guided approaches.
DOI: 10.48425/0070475
title: V_rodents_snaptrapping_abundance_intensive

description: Snap trapping data of rodents on the Varanger peninsula. This dataset has data from the COAT intensive study design and has data on site-based abundances. Two related datasets have information on i) trapped individuals and ii) trap status, i.e. missing and closed traps. The dataset includes four different types of files and all files are saved as ;-separated txt-files: * One data file per year (_YEAR.txt) * One coordinate file with coordinates of all sites (_coordinates.txt) * One auxiliary file with information about which sites are included in the study design (_aux.txt) * One readme file with additional information (_readme.pdf) The dataset has a two-year embargo, older versions of the dataset are publicly available for download.
DOI: 10.48425/0039023
title: V_rodents_snaptrapping_abundance_intensive

description: Snap trapping data of rodents on the Varanger peninsula. This dataset has data from the COAT intensive study design and has data on site-based abundances. Two related datasets have information on i) trapped individuals and ii) trap status, i.e. missing and closed traps. The dataset includes four different types of files and all files are saved as ;-separated txt-files: * One data file per year (_YEAR.txt) * One coordinate file with coordinates of all sites (_coordinates.txt) * One auxiliary file with information about which sites are included in the study design (_aux.txt) * One readme file with additional information (_readme.pdf) The dataset has a two-year embargo, older versions of the dataset are publicly available for download.
DOI: 10.48425/0069502
title: V_rodents_snaptrapping_individuals_intensive

description: Snap trapping data of rodents on the Varanger peninsula. This dataset has data from the COAT intensive study design. Each entry corresponds to a trapped individual. Two related datasets have information on i) site-based abundances and ii) trap status, i.e. missing and closed traps. The dataset includes four different types of files and all files are saved as ;-separated txt-files: * One data file per year (_YEAR.txt) * One coordinate file with coordinates of all sites (_coordinates.txt) * One auxiliary file with information about which sites are included in the study design (_aux.txt) * One readme file with additional information (_readme.pdf) The dataset has a two-year embargo, older versions of the dataset are publicly available for download.
DOI: 10.5522/04/21308124
title: The TAWOS dataset

description: TAWOS (Peacock in Farsi and Arabic) is a dataset of agile open-source software project issues mined from Jira repositories including many descriptive features (raw and derived). The dataset aims to be all-inclusive, making it well-suited to several research avenues, and cross-analyses therein. This dataset is described and presented in the paper "A Versatile Dataset of Agile Open Source Software Projects" authored by Vali Tawosi, Afnan Al-Subaihin, Rebecca Moussa and Federica Sarro. The paper is published in the Proceedings of the 19th International Conference on Mining Software Repositories (MSR 2022). For further information please refer to "https://github.com/SOLAR-group/TAWOS". <br> P.S.: A previous version of this dataset was once available which is replaced with this new version; thus, the older version is no longer publicly accessible.
DOI: 10.6084/m9.figshare.20745694
title: Supplementary Material for: Retinal vascular caliber in coronary heart disease and its risk factors

description: Abstract Background: Many clinical and experimental articles have suggested that the retinal vascular diameter can be used as a predictor of coronary heart disease (CHD). However, the results and reliability of the prediction are still controversial. Objective: A meta-analysis of observational study was conducted to clarify the relationships of retinal vessel caliber with CHD and CHD risk factors Method: PubMed and EMBASE were searched for all observational studies on the relationship of retinal vessel caliber with CHD and CHD risk factors from 2001 to 2021. The meta-analysis has been registered in PROSPERO (registration number is: CRD42021267154) Result: A total of 14 articles were selected for the inclusion in this meta-analysis. In the primary outcome, smaller retinal arteriolar caliber was related to CHD, and the results achieved statistical significance (MD -5.55 95%CI -8.07 to -3.02 P &lt; 0.0001, Fig. 2), while there was no significant difference in vein caliber between CHD and healthy people (MD 1.10 95%CI -3.55 to 5.76 P = 0.64 &gt; 0.05, Fig. 3). Smaller retinal arteriolar caliber was related to increasing age, male sex, bigger BMI, and hypertension. Bigger retinal arteriolar caliber was related to current smoking. Smaller retinal venule caliber was related to increasing age and hypertension. Bigger retinal venule caliber was related to current smoking, bigger BMI, and diabetes. Conclusion Smaller retinal arteriolar caliber was related to CHD, while there was no significant difference in venule caliber between CHD and healthy people. Retinal vascular caliber also independently related to CHD risk factors (e.g., age, gender, smoke, BMI, hypertension, and diabetes).