cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dbrv15f8w
title: Animations of vibration modes obtained from finite element simulations performed on the skull of a juvenile gray whale

description: The tympanoperiotic complex (TPC) plays a crucial role in whale hearing.
 It is a functional unit composed of three bony structures: the periotic
 (firmly embedded in the skull), the tympanic bulla (suspended from the
 skull on flexible suspensory pedicles), and the ossicular chain that
 connects the stapes footplate closing the oval window in the periotic with
 the tympanic [Mead 2009]. Hearing of mysticetes is ostensibly
 facilitated by the same mechanism as in most mammals: the ossicular chain
 is set in motion, and the stapes footplate consequently pushes on the
 cochlear fluid [Cranford 2018]. The ossicular chain connects the periotic
 bone, which houses the inner ear, with the bulla. Therefore, the most
 plausible mechanism for setting the ossicles in motion is a vibration of
 the bulla relative to the periotic bone. A juvenile gray whale
 head (LACM 97758) was acquired from the Natural History Museum of Los
 Angeles County. The specimen had been collected and transferred to a
 freezer soon after death, thereby preserving its fresh condition. The
 specimen underwent X-ray computed tomography (CT) scanning in two phases,
 first intact with all tissues and subsequently after removal of soft
 tissues superficial to the skull, as described by Cranford [in
 preparation].
description: # Animations of vibration modes obtained from finite element simulations
 performed on the skull of a juvenile gray whale
 [https://doi.org/10.5061/dryad.dbrv15f8w](https://doi.org/10.5061/dryad.dbrv15f8w) ## Description of the data and file structure All animation files are GIFs. Download and open in a browser to view the animation. Mode 16: 'gw_fs_real_transdec_Esk=8_Etp=35_m=3_nev=400_a=0_sw=1k-mode_16_anim.gif' Mode 18: 'gw_fs_real_transdec_Esk=8_Etp=35_m=3_nev=400_a=0_sw=1k-mode_18_anim.gif' Mode 26: 'gw_fs_real_transdec_Esk=8_Etp=35_m=3_nev=400_a=0_sw=1k-mode_26_anim.gif' Mode 29: 'gw_fs_real_transdec_Esk=8_Etp=35_m=3_nev=400_a=0_sw=1k-mode_29_anim.gif' The geometry of the skull was extracted from a CT image, and a finite element model of the bones was constructed.  Four vibration modes are shown, two for each of the ears. The modes that result in large motion of the middle ear bones are selected. Modeled modes of vibration for the tympanic bullae (a) mode 16 (324.9 Hz), (b) mode 18 (342.0 Hz), (c) mode 26 (646.8 Hz), and (d) mode 29 (718.0 Hz). The magnitude of the motion is color-coded: red is high, light blue is low. The skull is upside down, i.e., ventral side up.  * Mead JG, Fordyce RE. The Therian skull: a lexicon with emphasis on the odontocetes. *Smithsonian Contributions to Zoology.* 2009; 627: 1–249. doi:10.5479/si.00810282.627. * Cranford T, Krysl P. Sound Paths, Cetaceans. Encyclopedia of Marine Mammals. 2018; (1989): 901–904. doi:10.1016/b978-0-12-804327-1.00236-3. ## Sharing/Access information Links to other publicly accessible locations of the data located in the Related Works section.
DOI: 10.5281/zenodo.18406322
title: Nutqiy rivojlanishda muammosi  bor bolalarda fonematik eshituvni  shakllantirishning samarali usullari

description: Ushbu maqolada nutqiy rivojlanishida muammolari mavjud bo‘lgan bolalarda fonematik eshituvni shakllantirishning samarali pedagogik va logopedik usullari yoritilgan. Fonematik eshituv nutq tovushlarini farqlash, tahlil qilish va ularning semantik ahamiyatini anglash jarayonini ta’minlovchi asosiy psixolingvistik mexanizm hisoblanadi. Tadqiqotda fonematik eshituvni rivojlantirishga yo‘naltirilgan maxsus mashqlar, o‘yin texnologiyalari va multimodal metodlardan foydalanildi. Olingan natijalar tizimli va bosqichma-bosqich tashkil etilgan korreksion-pedagogik ishlar bolalarning nutqiy rivojlanish darajasini sezilarli yaxshilashini ko‘rsatdi.
DOI: 10.5281/zenodo.18406323
title: Nutqiy rivojlanishda muammosi  bor bolalarda fonematik eshituvni  shakllantirishning samarali usullari

description: Ushbu maqolada nutqiy rivojlanishida muammolari mavjud bo‘lgan bolalarda fonematik eshituvni shakllantirishning samarali pedagogik va logopedik usullari yoritilgan. Fonematik eshituv nutq tovushlarini farqlash, tahlil qilish va ularning semantik ahamiyatini anglash jarayonini ta’minlovchi asosiy psixolingvistik mexanizm hisoblanadi. Tadqiqotda fonematik eshituvni rivojlantirishga yo‘naltirilgan maxsus mashqlar, o‘yin texnologiyalari va multimodal metodlardan foydalanildi. Olingan natijalar tizimli va bosqichma-bosqich tashkil etilgan korreksion-pedagogik ishlar bolalarning nutqiy rivojlanish darajasini sezilarli yaxshilashini ko‘rsatdi.
DOI: 10.15468/dl.jj44f8
title: Occurrence Download

description: A dataset containing 1193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gorilla beringei"
 ]
}

 The dataset includes 1193 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003960-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.08kprr59g
title: Microsatellite genotypes of Cercidiphyllum japonicum seeds and identity numbers of the seed parents

description: Genotypes at five microsatellite loci of 361 Cercidiphyllum japonicum
 seeds and identity numbers of their seed-parents in a population
 distributed over about 80 ha along a stream within Iwanazawa Forest
 Reserve (43°13′N, 142°34′E), University of Tokyo Hokkaido Forest, in
 central Hokkaido, Japan. Based on this and another data
 (https://doi.org/10.5061/dryad.zcrjdfnb7), pattern of gene dispersal via
 pollen in this population was estimated by neighborhood model approach and
 Two generation analysis (TwoGener). These data set can be reused for
 review of the study and would be useful for comparison with other studies
 on gene dispersal of tree species.
description: # Microsatellite genotypes of Cercidiphyllum japonicum seeds and identity
 numbers of the seed parents "seed" sd_id: ID of seed mother: ID
 of mother (seed parent) m_x: x-coordinate of mother location (m) m_y:
 y-coordinate of mother location (m) Every single allele is denoted by
 integer. Each allele of a missing genotype is denoted by 0. The name of
 each locus is followed by “A” or “B” for each of the two genes. Field data
 and microsatellite genotypes of adult trees are available from the Dryad
 Digital Repository by the URL below.
 [https://doi.org/10.5061/dryad.zcrjdfnb7](https://doi.org/10.5061/dryad.zcrjdfnb7)
DOI: 10.5061/dryad.4j0zpc8m1
title: Data from: Sensory perception of rivals has trait-dependent effects on plasticity in Drosophila melanogaster

description: The social environment has myriad effects on individuals, altering
 reproduction, immune function, cognition, and aging. Phenotypic plasticity
 enables animals to respond to heterogeneous environments such as the
 social environment but requires that they assess those environments
 accurately. It has been suggested that combinations of sensory cues allow
 animals to respond rapidly and accurately to changeable environments, but
 it is unclear whether the same sensory inputs are required in all traits
 that respond to a particular environmental
 cue. Drosophila melanogaster males, in the presence of rival
 males, exhibit a consistent behavioral response by extending mating
 duration. However, exposure to a rival also results in a reduction in
 their lifespan, a phenomenon interpreted as a trade-off associated with
 sperm competition strategies. D. melanogaster perceive their rivals by
 using multiple sensory cues; interfering with at least two of olfactory,
 auditory, or tactile cues eliminates the extension of mating duration.
 Here we assessed whether these same cues were implicated in the lifespan
 reduction. Removal of combinations of auditory and olfactory cues removed
 the extended mating duration response to a rival, as previously found.
 However, we found that these manipulations did not alter the reduction in
 lifespan of males exposed to rivals or induce any changes in activity
 patterns, grooming or male-male aggression. Therefore, our analysis
 suggests that lifespan reduction is not a cost associated with the
 behavioral responses to sperm competition. Moreover, this highlights the
 trait-specific nature of the mechanisms underlying plasticity in response
 to the same environmental conditions. 
description: # Data from: Sensory perception of rivals has trait-dependent effects on
 plasticity in Drosophila melanogaster
 [https://doi.org/10.5061/dryad.4j0zpc8m1](https://doi.org/10.5061/dryad.4j0zpc8m1) Data are mating, behavioural and lifespan observations for male *Drosophila melanogaster* fruit flies under social isolation or pairing, with manipulation of sensory cues. ## Description of the data and file structure Datafile contains 9 tabs, one "readme" tab and 13 data sheets. The readme tab details the link between the data in each tab and the figure presented in the associated paper, then explanations of column names in each datasheet. ## Code/Software Analysis was completed in R and code is appended as supplementary material of the paper.
DOI: 10.5061/dryad.d7wm37q85
title: Genome-wide single nucleotide polymorphisms reveal the genetic diversity and population structure of Creole goats from northern Peru

description: Goat farming constitutes a significant source of income for farmers in
 northern Peru. There is currently an absence of information about the
 genetics of Peruvian Creole goats that would enable us to understand their
 origins and genetic spread. The objective of this study was to estimate
 the genetic diversity of Creole goats from northern Peru using SNP
 markers. This study involved the collection of 192 male Creole goats from
 three key goat production regions in northern Peru. These goat samples
 were genotyped using the GGPGoat70k SNP panel. To explore the genetic
 influence of other breeds on Peruvian Creole goats, our dataset was
 combined with previously published SNP genotypes. External data set
 includes multiple breeds genotypes sampled from Argentina, Brazil, Spain,
 and Alpine breed from Italy, France, and Switzerland. After quality
 control 52,832 autosomal SNPs were used to assess genetic diversity in the
 Peruvian goats. For the population structure analysis of the merged data
 20,513 common SNPs were used. Estimations for expected heterozygosity
 (He), observed heterozygosity (Ho), and inbreeding coefficient (FIS) were
 computed for the Peruvian groups. AMOVA, principal component analysis and
 ADMIXTURE were conducted to evaluate the population structure in the two
 data sets, Peru and merged. The results revealed a considerable genetic
 diversity, with Ho values ranging from 0.40 to 0.41 for the Peruvian
 sampling groups, and inbreeding coefficient was notably low for Peruvian
 goat. The population structure analysis demonstrated a distinction
 (p&lt; 0.05) from other breeds. These findings suggest a level of
 genetic differentiation of the Peruvian goat population among other
 breeds, although further research is needed considering samples from other
 Peruvian areas. We expect this study will contribute to define genetic
 management strategies to prevent the loss of genetic diversity in Peruvian
 goat populations and for upcoming advancements in this field.
description: DNA samples were genotyped using Illumina GGP Goat 70K with the
 help of the commercial genotyping service provider (Neogen, Geneseek, NL,
 USA).
description: # Northern Peruvian Creole goats SNP data set A total of 192 ear punch
 tissue samples were collected from goats identified as Creole by a
 technical assistant and owners. Goats were sampled from three northern
 Peruvian locations, Tumbes (n=35), Piura (n=129), and Lambayeque (n=28)
 Description of the data and file structure This is a vcf file.
DOI: 10.5281/zenodo.18406179
title: Dados de survey sobre o uso de metodologias ativas em cursos superiores de Gestão / Survey data on active learning implementation in evening business programs

description: Descrição

Este conjunto de dados reúne respostas de um survey aplicado a estudantes e professores de cursos superiores de Gestão, com o objetivo de analisar o uso, a frequência e as percepções sobre metodologias ativas de ensino. O instrumento contemplou diferentes abordagens pedagógicas, incluindo aprendizagem baseada em projetos, método de caso, sala de aula invertida, simulações empresariais, jogos de negócios, gamificação, aprendizagem baseada em equipes, instrução por pares e metodologias colaborativas e reflexivas.

Os dados foram coletados por meio de questionário estruturado e organizados em planilha eletrônica. As respostas encontram-se anonimizadas e não permitem a identificação individual dos participantes. O conjunto de dados foi utilizado como base empírica para um artigo científico submetido a periódico internacional na área de educação em negócios, com foco na implementação de metodologias ativas em cursos superiores de Gestão.

————————DESCRIPTION

This dataset contains responses from a survey administered to students and faculty members in higher education management programs, aiming to examine the use, frequency, and perceptions of active learning methodologies. The instrument covered a range of pedagogical approaches, including project-based learning, case method, flipped classroom, business simulations, business games, gamification, team-based learning, peer instruction, and collaborative and reflective teaching methodologies.

Data were collected through a structured questionnaire and organized in a spreadsheet format. All responses are anonymized and do not allow individual identification of participants. The dataset serves as the empirical basis for a research article submitted to an international journal in the field of business education, focusing on the implementation of active learning methodologies in higher education management courses.
DOI: 10.15468/dl.27abae
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-110.53303 35.02449,-103.54871 35.02449,-103.54871 45.2854,-110.53303 45.2854,-110.53303 35.02449))",
 "HasCoordinate is true",
 "TaxonKey is Satyrium liparops"
 ]
}

 The dataset includes 135 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003961-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.9ghx3ffrh
title: Single molecule image sequences of Thermothielavioides terrestris AA9E (TtAA9E) on cellulose in oxygen scavenging systems

description: Purified and Cy5-labeled lytic polysaccharide monooxygenase (LPMO)
 Thermothielavioides terrestris AA9E (TtAA9E) interacting at the surface of
 crystalline cellulose fibrils were imaged by Total Internal Reflectance
 Fluorescence Microscopy (TIRFM) in two different oxygen scavenging
 systems: Glucose Oxidase-Catalase (GODCAT) and Protocatechuic
 Acid/Protocatechuate-3,4-dioxygenase (PCA/PCD). The datasets (movies) show
 how oxygen and hydrogen peroxide availability, and reductant
 type/availability impact specific binding of the LPMO to highly ordered
 cellulose fibrils.
description: # Single Molecule Image Sequences of *Thermothielavioides terrestris* AA9E
 (*Tt*AA9E) on Cellulose in Oxygen Scavenging System Dataset DOI:
 [10.5061/dryad.9ghx3ffrh](10.5061/dryad.9ghx3ffrh) Single-molecule
 fluorescence images of individual Cy5-labeled enzyme molecules binding and
 unbinding from cellulose fibrils were imaged using 488 nm and 637 nm
 excitation laser reflected by a multiline dichroic mirror (FF500/646-Di01,
 Semrock) and focused at the back aperture of a 1.49 NA 60X oil-immersion
 objective (Olympus) to provide total-internal-reflection (TIR) excitation
 at the cover glass / water interface across a ~50 µm diameter area in the
 object plane. Sample emission was collected and imaged by the same
 objective onto the 512x512-pixel sensor of an electron multiplying CCD
 (EMCCD) camera (Photonmax, Princeton Instruments). A 37 nm wide bandpass
 filter centered at 676 nm was used to isolate Cy5 fluorescence excited at
 637 nm. For the binding time measurements, the overall magnification of
 the imaging system (73X) mapped each EMCCD pixel to a 220x220 nm area in
 the object plane.  Relatively low power (~0.2 mW @ 637 nm) excitation was
 used to reduce the effect of Cy5 photobleaching on the binding time
 measurements. Under similar imaging conditions, fluorescence lifetimes of
 most (90%) of Cy5 fluorophores exhibited an extended characteristic decay
 time of 1101 s in the GODCAT oxygen scavenging buffer system (Supplemental
 Information 1). Image stacks were collected at EMCCD camera integration
 times of 1 second. The table below indicate enzyme and reaction conditions
 associated with each datafile. ## Description of the data and file
 structure Descriptions of the data and file structure are provided in the
 attached Datafile_structure.csv ## Code/software Both .spe and .tif files
 contain image stacks (multiple images collected in sequence over a period
 of time) that can be directly opened in ImageJ (File-&gt;Open and browse
 to select file, or drag and drop). The image stacks can be played to watch
 movies of fluorescently-labeled cellulose binding and unbinding on the
 surface with cellulose fibrils. It is helpful to match brightness and
 contrast of the images (Image-&gt;Adjust-&gt;Brightness/Contrast) when
 comparing multiple data sets.
DOI: 10.25345/c5n29pm39
title: MassIVE MSV000100626 - Site-Resolved Glycoproteomics Reveals Selective Glycosylation Remodeling in Parkinson Disease Frontal Cortex
title: Here we applied integrated site resolved glycoproteomics and global proteomics to post mortem frontal cortex tissue from individuals with PD and neurologically normal controls to investigate whether PD is associated with selective alterations in protein glycosylation.
DOI: 10.5281/zenodo.18393535
title: A Multidetector Fluorescence Flow Cell with Software-Based Calibration for High Optical Density Analysis - Experimental data

description: This repository contains the processed datasets and raw instrument exports supporting the manuscript “A Multidetector Fluorescence Flow Cell with Software-Based Calibration for High Optical Density Analysis” (manuscript in preparation; citation data will be updated pending publication).

The study evaluates inner-filter-effect correction using two fixed fluorescence detection points (F0, F1) in a custom flow cell under (i) static sample loading and (ii) continuous-flow gradient conditions.

Contents

1) Processed datasets (Excel)



Weitner and Sakic-Multidetector Fluorescence Flow Cell-STATIC.xlsx: static (manual) sample loading dataset including fluorescein concentration series, extracted fluorescence signals (F0, F1), calibrated/corrected signal (F_IFE-CORR), and summary performance metrics (e.g., R2, LOD%, mErr%) used in the manuscript figures and analysis.

Weitner and Sakic-Multidetector Fluorescence Flow Cell-FLOW.xlsx: continuous-flow gradient dataset including time-point series across the usable gradient window (2–98% B), extracted fluorescence signals (F0, F1), calibrated/corrected signal (F_IFE-CORR), and summary performance metrics used in the manuscript.


2) Raw instrument exports (ASCII)These files are provided to enable full reprocessing from primary instrument outputs.

(a) ÄKTA start exports (gradient method + run log)



Method export (UNICORN start 1.1): tabulated parameter list for the programmed gradient, including flow rate, mixer/delay volume parameters, and gradient segment definitions (0–100% B).

Raw run data export: time/volume series, including UV (mAU), gradient concentration (%B), system flow, pressure, and run log annotations.


(b) Ocean Optics exports (spectral time series)



ASCII spectral time-series exports recorded during gradient runs, including acquisition metadata (spectrometer ID, trigger mode, scans-to-average, integration time, pixel count) followed by wavelength-resolved spectra. These files provide the raw fluorescence spectra from which F0/F1 intensities were extracted.


Notes on gradient verification / correction

The effective gradient delivered to the flow cell was verified using on-line UV absorbance at 280 nm from the ÄKTA UV detector (0.2 cm path length). Due to known non-linearity at the gradient endpoints (valve duty-cycle limits and mixer dispersion), only the central 2–98% B region was used for inner-filter-effect evaluation; the initial and final 2% were excluded. The measured UV trace was used to construct a corrected gradient axis for downstream analysis by mapping the recorded signal onto an ideal linear gradient.

Reuse

Users can reproduce the manuscript plots directly from the Excel files or recompute fluorescence extraction and calibration from the raw ASCII exports.
DOI: 10.5281/zenodo.18405341
title: GeoFireGuard
title: Servizio open data di monitoraggio e protezione delle aree a rischio incendio

description: (EN) Driven by the need to provide up-to-date data on natural and human-induced risks due to the climate crisis, GeoFireGuard is an open data service for monitoring and protecting areas at risk of wildfires. It leverages geospatial data from the Sentinel constellations of the Copernicus programme (EU/ESA), HS2, ERA5, Landsat, EMIT, GIBS, Aqua and Terra, TRMM, GPM, IMERG, and the FIRMS service by NASA/USGS (USA).Area of interest: Vulture Alto-Bradano (Basilicata, Italy).

(IT) Dall'esigenza di fornire dati sempre più aggiornati sui rischi naturali e antropici legati alla crisi climatica nasce GeoFireGuard, un servizio open data per il monitoraggio e la protezione delle aree a rischio incendio. Il progetto utilizza dati geospaziali provenienti dalle costellazioni Sentinel del programma Copernicus (UE/ESA), HS2, ERA5, Landsat, EMIT, GIBS, Aqua e Terra, TRMM, GPM, IMERG e dal servizio FIRMS della NASA/USGS (USA).Area di interesse: Vulture Alto-Bradano (Basilicata, Italia).
DOI: 10.5281/zenodo.11001553
title: GeoFireGuard
title: Servizio open data di monitoraggio e protezione delle aree a rischio incendio

description: (EN) Driven by the need to provide up-to-date data on natural and human-induced risks due to the climate crisis, GeoFireGuard is an open data service for monitoring and protecting areas at risk of wildfires. It leverages geospatial data from the Sentinel constellations of the Copernicus programme (EU/ESA), HS2, ERA5, Landsat, EMIT, GIBS, Aqua and Terra, TRMM, GPM, IMERG, and the FIRMS service by NASA/USGS (USA).Area of interest: Vulture Alto-Bradano (Basilicata, Italy).

(IT) Dall'esigenza di fornire dati sempre più aggiornati sui rischi naturali e antropici legati alla crisi climatica nasce GeoFireGuard, un servizio open data per il monitoraggio e la protezione delle aree a rischio incendio. Il progetto utilizza dati geospaziali provenienti dalle costellazioni Sentinel del programma Copernicus (UE/ESA), HS2, ERA5, Landsat, EMIT, GIBS, Aqua e Terra, TRMM, GPM, IMERG e dal servizio FIRMS della NASA/USGS (USA).Area di interesse: Vulture Alto-Bradano (Basilicata, Italia).
DOI: 10.15468/dl.58dzja
title: Occurrence Download

description: A dataset containing 1838 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cethosia biblis"
 ]
}

 The dataset includes 1838 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003963-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p14s7l5t
title: Cesium-137 Isotope Activity Measured in Core 22KAR_21A from Karluk Lake, Kodiak Island, Alaska in 2022

description: The dataset lists specific activities of Cesium-137 in disintegrations per minute per gram (dpm per g) from 21 samples in the upper 33 centimeters of sediment core 22KAR-21A collected in Karluk Lake, Kodiak Island, Alaska.