cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3626006_d2.v1
title: Additional file 2: of Characterization of proliferating cell nuclear antigen (PCNA) from pathogenic yeast Candida albicans and its functional analyses in S. Cerevisiae

description: Table S2. Quantification of band intensities of Semi-quantitative RT PCR for yeast expressing various PCNAs (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3626030_d1.v1
title: Additional file 1: of Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

description: List of the 2446 accessions considered in the present study with their accession code (AcceNumber), name (AcceName), the name of the providing collection (Collection), their duplicate code according to the SSR profile (FBUNQ, see text), their ploidy level (Ploidy) determined according to the occurrences of three alleles per locus (see text), their status (Analyzed) as analyzed or not-analyzed within the duplicate group (when adequate), their documented European geographic region of origin (Eur_reg_orig), their putative country of origin (Country_orig), their group assignment (Group) inferred by the Structure analysis with the highest proportion of ancestry (qImax), and their subgroup assignment (Subgroup) inferred by the nested Structure analysis with the highest proportion of ancestry (qImax nested). (XLSX 394 kb)
DOI: 10.6084/m9.figshare.c.3626030_d2.v1
title: Additional file 3: of Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

description: Characteristics of the 16 SSR markers used in this study with indication of the corresponding multiplex and dye. Footnotes: a [61]; b [60]; c [59]; d [62]; e Primer concentration within a given multiplex has been adjusted to get more homogeneous SSR marker amplification intensities. (XLSX 10 kb)
DOI: 10.5281/zenodo.14509451
title: Observation of quantum thermalization restricted to Hilbert space fragments and Z_{2k} scars

description: Data and code for the article "Observation of quantum thermalization restricted to Hilbert space fragments and Z_{2k} scars".
DOI: 10.6084/m9.figshare.c.3626042_d1.v1
title: Additional file 2: of De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies

description: Detailed information on genetic distance and linkage phase between adjacent SNP markers on the genetic linkage map of the female P. deltoides â  I-69â  . The corresponding identical SNPs identified based on the P. trichocarpa reference genome are also included. (XLS 452Â kb)
DOI: 10.6084/m9.figshare.c.3626042_d3.v1
title: Additional file 3: of De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies

description: Detailed information on genetic distance and linkage phase between adjacent SNP markers on the genetic linkage map of the male P. simonii â  L-3â  . The corresponding identical SNPs identified on the basis of the P. trichocarpa reference genome are also included. (XLS 349Â kb)
DOI: 10.17863/cam.44914
title: Crystallographic diffraction data for the structure of herpes simplex virus 1 pUL7:pUL51 complex

description: Crystallographic diffraction data used to solve the structure of HSV-1 pUL7:pUL51 complex and for the high resolution refinement of this structure, as deposited with the PDB ID 6T5A. For more information, see the README.txt file
DOI: 10.17863/cam.102113
title: Data supporting publication "Symmetric Bidirectional 200 Gb/s/λ PON Solution Demonstrated over Field Installed Fiber"

description: This data supports the publication for OFC 2024. The data was obtained by analising the oscilloscope traces using the digital signal processing algorithms descibed in the conference submission. The data contains Sensitivity and Power Budget numbers for a PON system in line with International Telecommunication Union Telecommunication Standardization Sector (ITU-T) standard requirements. For power budget the bit error rate threshold is taken at pre-FEC error rate of 10^-2. Only processed data is included due to the large size of the oscilloscope trace collection
DOI: 10.17863/cam.83120
title: Research data supporting “Gamma Correction in Holographic Projection"

description: Holography presents a basis for applications in imaging, measurements and displays; however, the achieved image quality in the replay field poses challenges to computer-generated holography. In a computer-generated holographic projection system, the image is generated via diffraction of light from spatial light modulators. In this process, several factors contribute to non-linearities between the replay field and the target image. The images in this dataset were captured to demonstrate the effectiveness of gamma correction method in holographic projection. Image descriptions: 1. "Replay field of holographic projection of linear ramp.jpg": Holographic projection replay field of linear grey-scale ramp. 2. "Replay field of holographic projection of gama corrected ramp.jpg": Holographic projection replay field of gamma corrected grey-scale ramp. 3. "Replay field of holographic projection of uncorrected city scene.jpg": Replay field of Sample image of city scene before gamma correction. 4. "Replay field of holographic projection of gamma corrected city scene.jpg": Relay field of Sample image of city scene after gamma correction. 5. "Replay field of holographic projection of uncorrected horse.jpg": Replay field of Sample image horse before gamma correction. 6. "Replay field of holographic projection of gamma corrected horse.jpg": Replay field of Sample image horse after gamma correction. The device used to capture the images was a Digital single-lens reflex camera of Model Cannon EOS 550D.
DOI: 10.17863/cam.81332
title: DFT, Molecular Mechanics and Raw NMR Data for: The DP5 Probability, Quantification and Visualisation of Structural Uncertainty in Single Molecules. Revised

description: Archive of DFT and Molecular Mechanics Data for The DP5 Probability, Automatic Quantification and Visualization of Structural Uncertainty in Single Molecules. All of the files can be opened in any text editor. The conformational search output structures can be visualised in Schrodinger Maestro. Gaussian output structures can be viewed in Avogadro, jmol and in most other molecular viewers/editors. This archive is separated into folders corresponding to each structure reassignment example described in the paper. Within these subfolders the SXa_.sdf file corresponds to the input molecular geometry for the originally proposed incorrect structure for example SX. Similarly the the SXb_.sdf file corresponds to the input molecular geometry for the revised structure for example SX. The SXy_.mae files describe the macromodel conformational search for diastereomer. The handwritten NMR description is stored in the file SX_NMR The DFT calculation files are also then organised into subfolders nmr - NMR DFT calculations opt – DFT geometry optimisation calculations (Opt and Opt_E only) e – DFT M062X single point energy caculations (Opt_E only) These files are in the Gaussian input and output file format. The input (.com) file names all have the form SXy_ZginpZ.com this is read as: Structural reassignment example X, revision y, Gaussian input, conformer Z. For each (.com) input file there is a corresponding (.out) output file with the same file name.
DOI: 10.6084/m9.figshare.c.3626099_d2.v1
title: Additional file 1: of Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit

description: Supplementary tables. A collection of tables containing a variety of extra data including raw data gathered in the experiments, limits of detection calculations, data used for analyses of traits, and data used for generation of some of the figures. Also included is a detailed ouput from variance components analysis and a list of the abbreviations used across the tables. (XLSX 1324 kb)
DOI: 10.17863/cam.99956
title: Dataset supporting publication "200 Gb/s/λ Upstream PON using Polarization Multiplexed PAM4 with Coherent Detection"

description: The processed data was obtained by analysing captured oscilloscope traces using offline digital signal processing (DSP) in Matlab. The DSP contains carrier frequency recovery, an adaptive equalizer based on least-mean squares, and a maximum likelihood sequence estimator. The sensitivity is taken at BER = 10^-2. Power budget is a combination of sensitivity and launch power, taken at the SOA output. The SOA characteristics were measured using a commercial optical power meter. The MLSE trellis size scales 4^x, where x is the memory depth. In the nonlinear equalisers plot optimum MLSE lenght was used. Volterra equalizer is of 3rd order.
DOI: 10.6084/m9.figshare.c.3626126_d5.v1
title: Additional file 4: of 
                     Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton

description: Data Sets 1. Detailed list of the genes whose expression was significantly modified in iron deprivation (−Fe) compared to iron excess (+Fe) condition. (XLS 1381 kb)
DOI: 10.6084/m9.figshare.c.3626126_d7.v1
title: Additional file 5: of 
                     Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton

description: Data Sets 2. All information regarding all the genes for which expression was monitored using RNAseq technology. (XLS 7032 kb)
DOI: 10.23668/psycharchives.4955
title: Dataset for: Motion perception investigated in- and outside of the lab: Comparable performances for the Representational Momentum and Representational Gravity phenomena

description: Dataset for: Merz, S. (2022). Motion perception investigated inside and outside of the laboratory: Comparable performances for the representational momentum and representational gravity phenomena. Experimental Psychology, 69(2), 61-74. https://doi.org/10.1027/1618-3169/a000545
description: Representational Momentum and Representational Gravity describe systematic perceptual biases, occurring for the localization of the final location of a moving stimulus. While Representational Momentum describes the systematic overestimation along the motion trajectory (forward shift), Representational Gravity refers to a systematic localization bias in line with gravitational force (downward shift). Those phenomena are typically investigated in a laboratory setting, and while previous research has shown that online studies perform well for different task, motion perception outside of the laboratory was not focused to date. Therefore, one experiment was conducted in two different settings: in a typical, highly controlled laboratory setting and in an online setting of the participants’ choosing. In both experiments, the two most common trial types, implied motion stimuli and continuously moving stimuli, were used, and the influence of classical velocity manipulations (by varying stimulus timing and distance) was assessed. The data pattern across both experiments was very similar, indicating a robustness of both phenomena and indicating that motion perception can very well be studied outside the classical laboratory setting, opening a feasible possibility to diversify access to motion perception experiments everywhere.
DOI: 10.17863/cam.56872
title: Research data supporting "Modelling investigation of the thermal treatment of ash-contaminated particulate filters"

description: This is a repository of input files, output files and post-processing scripts required to reproduce the results and figures for the paper "Modelling investigation of the thermal treatment of ash-contaminated particulate filters". For more details, see the Readme files within the dataset.
DOI: 10.25574/62706
title: Chandra X-ray Observatory ObsId 62706
DOI: 10.6084/m9.figshare.c.3626195_d2.v1
title: Additional file 2: of End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis

description: DNAConstructor scripts.zip. Zip file containing files gfp_DNAConstructor.txt and rfp_DNAConstructor.txt, input script files for DNA Constructor. (ZIP 1.7 kb)
DOI: 10.6084/m9.figshare.c.3626207_d1.v1
title: Additional file 1: Table S1. of Explorations to improve the completeness of exome sequencing

description: Coverage of exons in 54 probands. Table S2. Genes with low coverage exons in all 54 probands. (XLSX 9613 kb)
DOI: 10.6084/m9.figshare.c.3626213_d2.v1
title: Additional file 1: of Randomized evaluation and cost-effectiveness of HIV and sexual and reproductive health service referral and linkage models in Zambia

description: De-identified REACH Study Data. This file contains study data, including de-identified data from the client information and tracking registry, the baseline interview, the six-week interview and the six-month interview. (CSV 8081Â kb)
DOI: 10.23668/psycharchives.4959
title: Dataset for: Pro-vaccination subjective norms moderate the relationship between conspiracy mentality and vaccination intentions

description: Dataset for: Winter, K., Pummerer, L., Hornsey, M. J., & Sassenberg, K. (in press). Pro-vaccination subjective norms moderate the relationship between conspiracy mentality and vaccination intentions. British Journal of Health Psychology.
DOI: 10.6084/m9.figshare.c.3626243_d1.v1
title: Additional file 1: of Merozoite surface protein-1 genetic diversity in Plasmodium malariae and Plasmodium brasilianum from Brazil

description: Pairwise similarity matrix among P. malariae/P. brasilianum isolates based on the MSP1 protein sequence fragments. The matrices on the left show, for each fragment separately, the raw numbers of identical amino acids and total amino acids compared between each pair of isolates. The matrices on the right show the aggregated similarity or difference values for the concatenated regions.(XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3626225_d4.v1
title: Additional file 3: of A transcriptome-based global map of signaling pathways in the ovarian cancer microenvironment associated with clinical outcome

description: Datasets S1–S7. (XLS 26437 kb)
DOI: 10.6084/m9.figshare.c.3626225_d5.v1
title: Additional file 4: of A transcriptome-based global map of signaling pathways in the ovarian cancer microenvironment associated with clinical outcome

description: Supplementary Table S1–S5. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3626252_d1.v1
title: Additional file 6: Table S6. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Small RNA (sRNA) prediction in Mycoplasma hyorhinis HUB-1. (XLSX 52Â kb)
DOI: 10.6084/m9.figshare.c.3626252_d2.v1
title: Additional file 9: Table S9. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Target prediction for the sRNAs from M. flocculare. (XLS 1863Â kb)
DOI: 10.6084/m9.figshare.c.3626225_d6.v1
title: Additional file 5: of A transcriptome-based global map of signaling pathways in the ovarian cancer microenvironment associated with clinical outcome

description: Source code. (TXT 9 kb)
DOI: 10.6084/m9.figshare.c.3626252_d3.v1
title: Additional file 4: Table S4. of Mycoplasma non-coding RNA: identification of small RNAs and targets

description: Small RNA (sRNA) prediction in Mycoplasma flocculare ATCC 27716. (XLSX 53Â kb)
DOI: 10.17863/cam.57720
title: Raw data for Fast purification of recombinant monomeric amyloid-β from E. coli and amyloid-β-mCherry aggregates from mammalian cells

description: Supporting raw data for Figure 2b. ThT assays, Figure 4. Oligomer sizes and Supplementary Figure 5. Cell vitality assays
DOI: 10.15468/dl.suzwfm
title: Occurrence Download

description: A dataset containing 1378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "TaxonKey is Pseudacris triseriata (Wied-Neuwied, 1838)"
 ]
}

 The dataset includes 1378 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037840-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3626279_d1.v1
title: Additional file 4: Table S2. of Defining the nitrogen regulated transcriptome of Mycobacterium smegmatis using continuous culture

description: Comparison of the gene expression profile between nitrogen-depleted continuous culture versus batch culture of M. smegmatis. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.c.3626282_d1.v1
title: Additional file 3: of The parameter sensitivity of random forests

description: Pairwise t-test results for sampsize intra-parameter groups for the low p/n data. All p-values were adjusted using a Benjamini-Hochberg procedure. There were no groups that differed significantly from each other. (TXT 333 bytes)
DOI: 10.6084/m9.figshare.c.3626276_d2.v1
title: Additional file 2: of Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics

description: Fourteen supporting tables. A table caption of each is given within the file. (XLSX 1540 kb)
DOI: 10.6084/m9.figshare.c.3626279_d2.v1
title: Additional file 5: Table S3. of Defining the nitrogen regulated transcriptome of Mycobacterium smegmatis using continuous culture

description: A list of genes that are differentially expressed in continuous culture, but not in batch culture. (XLSX 89Â kb)
DOI: 10.6084/m9.figshare.c.3626282_d2.v1
title: Additional file 2: of The parameter sensitivity of random forests

description: AUC results for low p/n data. Low p/n results for prediction accuracy using AUC as the performance metric for non-cross-validation results, 10-fold cross-validation and stratified 10-fold cross-validation. Ranks indicate the relative performance of different models with lower ranks representing higher performing models i.e., a rank of 1 is the best model. The default settings (n tree  = 500, m try  = 3, sampsize = 720) are found on row 1502 of the table. (CSV 116 kb)
DOI: 10.6084/m9.figshare.c.3626282_d3.v1
title: Additional file 12: of The parameter sensitivity of random forests

description: Pairwise t-test results for sampsize intra-parameter groups for the combined NSCLC validation data. All p-values were adjusted using a Benjamini-Hochberg procedure. Significant differences were observed between large and small sampsize values, in particular, sampsize 26 from sampsize 102 − 255; sampsize 51 from sampsize 128 − 255; sampsize 77 from sampsize 128 − 255, etc. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3626282_d4.v1
title: Additional file 16: of The parameter sensitivity of random forests

description: Random forest usage in papers. A summary table of papers referencing random forest over a seven month period (January 1 to November 4) from BMC Bioinformatics. Information was recorded whether the paper uses a RF algorithm, and if so, whether they parameterized and report the tuned parameters. Eleven of sixteen papers use the RF algorithm and less than half of samples performed model tuning. An even fewer number of papers reported the optimized values [62â  87]. (CSV 434 bytes)
DOI: 10.6084/m9.figshare.c.3626282_d5.v1
title: Additional file 1: of The parameter sensitivity of random forests

description: RF parameter settings. RF parameter settings for low p/n data (SeqControl; p = 15) and high p/n data (NSCLC; p = 12,138). (CSV 515 bytes)
DOI: 10.22002/d1.20099
title: Caltech Occluded Faces in the Wild (COFW)

description: A novel face dataset focused on occlusion, composed of 1,007 faces presenting a wide range of occlusion patterns. Dataset comes in grayscale (COFW.zip) and color (COFW_color.zip) variants.
DOI: 10.6084/m9.figshare.c.3626297_d1.v1
title: Additional file 1 of GOTA: GO term annotation of biomedical literature

description: Benchmark set. Detailed list of PubMed identifiers and related GO annotations used for the experimental tests. (GZ 2263 kb)
DOI: 10.6084/m9.figshare.c.3626282_d7.v1
title: Additional file 15: of The parameter sensitivity of random forests

description: Variable importance ranks according to ntree value. The ranks for the default parameters with unique n tree values as column heads and sequencing quality metrics as row heads. The ranks stabilize at n tree  = 10,000. Using this criteria, the variable identified as the most important was “Average reads/starts” in 40 % of samples, whereas, [6] identified “% bases ≥ 8×” as the most important variable using the cforest algorithm. Below n tree 1,000, “% bases ≥ 8×” was ranked as the most important variable in 40 % of samples. Although greater n tree values may lead to more consistent rankings for variable importance, these values may become more biased through sampling with replacement methods [20]. (CSV 667 bytes)
DOI: 10.17863/cam.83752
title: Data for 'Microbial fermentation of polyethylene terephthalate (PET) plastic waste for the production of chemicals or electricity'

description: The dataset contains the raw data that supports the findings of the study “Microbial fermentation of polyethylene terephthalate (PET) plastic waste for the production of chemicals or electricity”. Data was collected using the instrumentation described in the Methods section of the study.
DOI: 10.6084/m9.figshare.c.3626282_d15.v1
title: Additional file 10: of The parameter sensitivity of random forests

description: Pairwise t-test results for n tree intra-parameter groups for the combined NSCLC validation data. All p-values were adjusted using a Benjamini-Hochberg procedure. Lower n tree groups were found to differ from higher n tree parameter groups for example, n tree 10 from n tree 10,000â  â  â  500,000. (TXT 1019 bytes)
DOI: 10.5066/p132urw3
title: Data release for 'Peri-Gondwanan sediment in the Arkoma Basin derived from the north: The detrital zircon record of a uniquely concentrated non-Laurentian source signal in the late Paleozoic'

description: New detrital zircon and thin section point count data associated with Data release for 'Peri-Gondwanan sediment in the Arkoma Basin derived from the north: The detrital zircon record of a uniquely concentrated non-Laurentian source signal in the late Paleozoic'. Found in Geosphere, v. 20, n. 5, p. 1286-1314.
DOI: 10.17863/cam.56682
title: Research data supporting "A Single-Component Photorheological Fluid with Light-Responsive Viscosity"

description: Data files here contain the XY data reported in graphs in the main manuscript and ESI. The file "Linear Rheology" contains the raw rheology data reported as viscosity (X) vs shear rate (Y) for the native trans, cis PSS and blue PSS samples. The file "Oscillatory Rheology" contains raw rheology data reported as Storage and Loss Moduli (X) vs frequency (Y) for the native trans and blue recovered samples. "Cycling viscosity" reports viscosity at a fixed shear rate, for varying irradiation conditions (cis or trans PSS). The file "UV-Vis Absorption Spectroscopy" provides the absorbance (X) and wavelength (Y) for the AzoPS in the native trans, cis PSS and trans PSS. "UV Vis_Blue" reports the wavelength and absorbance for the trans PSS, as a function of blue light irradiation. "UV Vis_UV" reports the wavelength and absorbance for the cis PSS, as a function of UV light irradiation. The folders beginning with “SAXS” contain the relevant SAXS data referred to in the rest of the filename. Each file contains the q range (X), scattering intensity (Y) and error on scattering intensity (Y error). The model fits performed using SASview are also reported in each case as q (X) vs scattering intensity (Y).