cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/47gsfkkjjz
title: S-acylation controls SARS-Cov-2 membrane lipid organization and enhances infectivity, Mesquita, FS. et al. 

description: Supplementary table 3: Lipid enrichments in SARS-CoV-2 virions (complement to Figure 6 and Figure S6). Analysis of all individual lipid molecular species detected in SARS-CoV-2 virions and respective target cells, used for the graphs depicted in Figure 6 and S6. Lipid nomenclature is presented as: Lipid class abbreviation (e.g. HexCer), and variable components (fatty acids, Number of C atoms:number of double bonds – e.g. HexCer_34:1). 

The present table is discussed and analysed in the manuscript - S-acylation controls SARS-Cov-2 membrane lipid organization and enhances infectivity, Mesquita, FS. et al.  submited and published in DEVELOPMENTAL Cell 2021.
see also:  https://doi.org/10.1101/2021.03.14.435299
DOI: 10.18742/19467332.v1
title: The Geography of Litter - GPS Data

description:  Litter has a high potential for transport through aquatic environment, rivers and oceans are repeatedly found to not only contain, but displace large quantities of litter.  Pathways of litter from land to rivers are far more complex, and exact data on land-based transport methods and levels of contribution is often left to speculation. Facilitating factors of land-based transport are theorised to include the weight and material composition of the item, the incline of the terrain and meteorological forces such as wind and rain. This study explores the potential of human disperal of land-based litter by tagging bottle litter  with GPS trackers during a high footfall event. Data included are the coordinate location output of 9 GPS tagged litter items during the 2017 Oxford vs Cambridge in Putney. Included in the excel are details of  bottle name, coordinates, date, time and speed, collected at a 10 - 30 minute interval. Also included are shapefiles (BottleShapefiles) created in QGIS that include point data of coordinate output for each bottle throughout its journey.
DOI: 10.3535/pyv-nmq-pk0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xpy-yv2-60d
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3s1-31l-wpa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/dfg-w3v-w2f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gpg-k77-1p1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ltt-bwj-ath
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1412812.v1
title: Recenzja-ANFI-zadanie-grupowe-C-A.-Dąbrowska-K.-Krawczyk-A.-Micherda-A.-Mierzchała-Ż.-Kuduk

description: This paper presents an analysis of the financial condition of five Polish companies. To determine the financial level and the effectiveness of the entity we have calculated and interpreted: 15 indicators included in the PHI model proposed by John Zietlow, that are divided by the time horizon (general, immediate, short-term, medium-term). Additionally we have calculated the following indices: the risk of liquidation, ROA and ROE profitability, the increase of the company's value and the residual value of EVA.<br>Such detailed analysis of the company is a helpful tool in responding to the environmental relations. This work includes an assessment, interpretation and formulation of the conclusions, which are based on the achieved results.
DOI: 10.6084/m9.figshare.19519105.v1
title: Pangenome analysis of 882 V. cholerae genomes and detection of clade-specific genes

description: the synteny-aware pangenome pipeline Panaroo (v1.2.3) was run on the 882 assembled <i>V. cholerae</i> genome set with the option “--clean-mode strict” and default parameters otherwise.<br>To identify clade-specific accessory gene presence/absence patterns, we used custom R scripts (https://github.com/flass/yemenpaper) to compare the the gene presence/absence table output of Panaroo, to the mapped genome tree. Based on lists of genomes assigned to various clades and clusters, we identify accessory genes that are specific of a focus clade in contrast to a background group or a sister clade, considering the contrast significant when the Bonferonni-corrected p-value is below 0.05 and when the frequency of an allele is above 0.8 in the focus clade and below 0.2 in the background clade, or conversely.
DOI: 10.6084/m9.figshare.26343436.v1
title: Blockchain_Tara_Abu-Assab_Ashour.sav

description: This research explores the positive prospects of using blockchain technology as a mitigation measure by employing a decentralized, transparent, and distributed digital ledger in the insurance sector to help Palestinian insurance companies overcome these challenges and enhance their efficiency. It describes the current situation of insurance operations and procedures in Palestine, highlighting inefficient processes that blockchain-based solutions could address. A mixed-methods approach included qualitative and quantitative data collection and analysis. The research examines the effect of applying blockchain technology to different insurance processes, such as data security and transparency, automation, risk assessment, and fraud detection. Data was collected through five expert interviews and fifty distributed questionnaires in collaboration with local insurance companies and agents. In conclusion, the research reveals that blockchain technology can extensively impact the insurance sector and its organization. It can benefit and enhance efficiency.
DOI: 10.6084/m9.figshare.28321733.v2
title: Survey data discussed in "<b>Fostering Data Literacy through Paper Replication and Reproducible Workflows</b>"

description: This paper presents a curriculum designed to cultivate data literacy among first-year undergraduates by replicating a published economics paper and applying reproducible research workflows. Unlike existing methods that necessitate prior econometrics knowledge, this curriculum is accessible to students without prerequisites, providing an early introduction to economics research. The curriculum integrates basic R programming instruction via an online platform, which enables students to replicate a notable economics study. The curriculum emphasizes the importance of reproducibility in research by incorporating tools such as GitHub and web-based RStudio. The structure, benefits of the selected tools, and implementation guide are detailed, offering insights and practical guidance for educators aiming to achieve similar educational objectives.The data provided in this repository are derived from the United States Environmental Protection Agency (EPA) Clean Air Markets Program Data, as well as student surveys .
DOI: 10.17632/nrk7dr6hhn
title: Market Orientation, Networking and Competitive Advantage among MSMEs in Wonogiri Regency, Indonesia

description: This dataset contains data on the relationship between market orientation, networking, and the competitive advantage of Micro, Small, and Medium-sized Enterprises (MSMEs) in Indonesia. The data was collected through questionnaires distributed to MSME actors in the Wonogiri district of Central Java Province, Indonesia. The dataset covers demographic information, competitive advantage, market orientation, and networking aspects and is based on the responses of 200 selected MSMEs.
DOI: 10.3535/20c-msr-5m1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gyd-sqw-a9t
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23498544.v1
title: Table 8

description: Assessment of Peak SW in CLA group (RVF n=5; NO RVF n=4) and Time of Occurrence Within the Last Experimental Hour
DOI: 10.3535/1p2-rv7-sbc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t1t-dnt-f8g
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/jb5gt6pkgc
title: JIE_Replication_Data

description: The folder contains all the data and code necessary for replicating the plots and results in “Finite Resources and the World Economy”, by John Hassler, Per Krusell, and Conny Olovsson
DOI: 10.3535/9wf-a6y-ss0
title: Pycnolepis splendens (Eichwald, 1844)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/clq-dlh-np1
title: Sarcopterygii

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14304448.v1
title: Obstructive sleep apnea: acute effects of CPAP on polyssonographic variables

description: Introduction The use of non-invasive ventilation in the form of continuous positive airway pressure (CPAP) is among the main therapeutic options for patients with obstructive sleep apnea (OSA). Yet the effects of CPAP obtained on the first night of use are underreported. Objective To evaluate the acute effects of CPAP on polysomnographic variables in patients with OSA. Materials and methods This study is a case series with 31 patients (55.8 ± 11.4 years; 22 men) in the initial phase of CPAP treatment. The subjects were evaluated by means of polysomnography with and without CPAP (10.2 ± 3.1 cmH2O) and without CPAP, on different days, by means of the following variables: sleep stages 1, 2 and 3 (N1, N2 and N3), rapid eye movement (REM) sleep, apnea and hypopnea index (AHI), AHI in REM sleep (AHIREM) and the micro-arousal index (MAI). Results The use of CPAP resulted in a reduction of N2 (p &lt; 0.001), AHI (p &lt; 0.001), AHIREM (p &lt; 0.001) and MAI (p = 0.001). There was an increase in N3 (p = 0.006) and REM sleep (p &lt; 0.001) during the night with use of CPAP. Conclusion This study demonstrated that, from the first night of use by patients with OSA, CPAP promotes greater balance between sleep phases, and improves sleep quality. These results should be presented to patients and their families in order to encourage greater adherence in the initial phase of treatment with CPAP.
DOI: 10.17632/x67px7d59v
title: Data for: A novel shape memory poly(ɛ-caprolactone)/hydroxyapatite nanoparticle networks for potential biomedical applications

description: We would like to submit the enclosed manuscript entitled “A novel shape memory poly(ɛ-caprolactone)/Hydroxyapatite nanoparticle networks for potential biomedical applications”, which we wish to be considered for publication. No conflict of interest exits in the submission of this manuscript, and manuscript is approved by all authors for publication. I would like to declare on behalf of my co-authors that the work described was original research that has not been published in any other magazine or in any other journal previously, and not under consideration for publication elsewhere, in whole or in part. I hope this paper is suitable for your journal. We deeply appreciate your consideration of our manuscript, and we look forward to receiving comments from the reviewers. If you have any questions, please don’t hesitate to contact me.
DOI: 10.17632/x8xr9mwcbh
title: Data for: RADARSAT-2 DInSAR and GNSS-derived finite fault model of the 2012 Mw 7.8 Haida Gwaii earthquake.

description: These RADARSAT-2 interferograms were used in the manuscript: 
Samsonov, S., and Jiang, Y., 2024. RADARSAT-2 DInSAR and GNSS-derived finite fault model of the 2012 Mw 7.8 Haida Gwaii earthquake. Canadian Journal of Remote Sensing, https://doi.org/10.1080/07038992.2024.2424768.
DOI: 10.3535/6kn-3qg-qxv
title: Glyptolepis quadrata Eichwald

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d4p-dga-thz
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wlr-lpw-5z5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ztg-665-3b2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5522/04/8851616.v2
title: SynthCity Dataset - Area 1

description: With deep learning becoming a more prominent approach for automatic classification of three-dimensional point cloud data, a key bottleneck is the amount of high quality training data, especially when compared to that available for two-dimensional images. One potential solution is the use of synthetic data for pre-training networks, however the ability for models to generalise from synthetic data to real world data has been poorly studied for point clouds. Despite this, a huge wealth of 3D virtual environments exist, which if proved effective can be exploited. We therefore argue that research in this domain would be hugely useful. In this paper we present SynthCity an open dataset to help aid research. SynthCity is a 367.9M point synthetic full colour Mobile Laser Scanning point cloud. Every point is labelled from one of nine categories. We generate our point cloud in a typical Urban/Suburban environment using the Blensor plugin for Blender. See our project website http://www.synthcity.xyz or paper https://arxiv.org/abs/1907.04758 for more information.
DOI: 10.6084/m9.figshare.24873822.v1
title: weather_raw

description: daily weather dataset without data clean
DOI: 10.6084/m9.figshare.28408919.v1
title: Multiomics of breast cancer TME by co-cultures of five cell types

description: We use single-Nuclei RNAseq and ATACseq analysis of co-cultures of cells present in triple-negative breast cancer—including MDA-MB-231, breast CAFs, MSCs, endothelial cells, and unpolarized macrophages.Four samples/conditions: Control, Lactate, Oscillation and Hypoxia
DOI: 10.3535/k2z-762-304
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/cbc-j13-hl5
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qqt-q3j-qql
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/fkw-egg-kj4
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hyn-psf-hlw
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/19d-l19-5nq
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6ze-j53-c2n
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/njb-rdh-4wj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p0s-fq2-z41
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3pb-89j-f3q
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jae-fyf-2s9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1vc-j0c-rg2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zsk-9ex-q31
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22231504.v1
title: Santangeli et al. DATA & SCRIPTS - What drives our aesthetic attraction to birds?

description: The dataset file (CSV) includes all the variables used in the study by Santangeli et al. titled What drives our aesthetic attraction to birds published in The dataset file (CSV) includes all the variables used in the study by Santangeli et al. titled <b><i>What drives our aesthetic attraction to birds?</i></b> published in 2023 in NPJ Biodiversity (<b>DOI : </b>10.1038/s44185-023-00026-2).The dataset (file named: "<i>monsterALL2_2_2023.csv</i>") is structured so as to have one or two rows per species, depending if the species is sex dichromatic or not. This structure is dictated and adjusted by the availablility of the species by sex aesthetic attractiveness score.Sex monochromatic species have only one attractiveness score, and appear as only one row in the database. Sex dichromatic species may have up to two available attractiveness scores, one for eaither sex (male or female), and therefore may have up to two rows in the database, if attractiveness for both sexes is available.In terms of the variables, the dataset includes taxonomy related variables, such as the species latin name, family and order level information, as well as sex, with three classes: male, female or average (for the monochromatic species).Attractiveness is given with two variables, including the average attractiveness score by species and sex, and the standard deviation associated to that score as a measure of uncertainty.These are followed by a selection of AVONET (https://figshare.com/articles/dataset/AVONET_morphological_ecological_and_geographical_data_for_all_birds_Tobias_et_al_2021_Ecology_Letters_/16586228/1) bird traits, such as morphometric measurements (e.g. beak and tarsus length), as well as data on the habitat, migration ecology and trophic level of each species.Then the color related variables are presented, including the plain colors (such as blue and green) separately for their dark and light version (e.g. <i>blueD </i>and <i>blueL</i>, respectively), as well as other variables representing color diversity (<i>n.loci</i>), color elaboration (<i>elaboration</i>), sex dichromatism score. Other variables following are the length of the crest (<i>crest</i>), IUCN red list category and population trend, as well as biogeographical variables related to the species range (e.g. range size). The last column (BirdTREE) represents the bird species taxonomy matching the BirdTREE taxonomy (available at: https://birdtree.org/).<br>The script file (<i>Santangeli et al Attractivness_final_script</i>) includes all the documented steps to reproduce the analyses, which also require custom made functions available in the file "<i>Functions</i>".<br>
DOI: 10.17632/vk7vr3nd86
title: Billetera_Virtual_Python

description: Se explora el uso de diccionarios en Python aplicados a un contexto práctico: la administración de una billetera virtual de Bitcoin. Donde el rol es ser el encargado de los procesos de retiro y de proporcionar información necesaria para realizar retiros a través de esta billetera virtual. Los diccionarios en Python se convertirán en una herramienta esencial para organizar y acceder a los datos relevantes de los usuarios y sus transacciones.
DOI: 10.17632/yckh8rkr9c
title: A Novel PLOD1 Gene Mutation causing Kyphoscoliotic Ehlers-Danlos Syndrome in Chinese patient

description: Kyphoscoliotic Ehlers-Danlos syndrome (kEDS) is a rare autosomal recessive connective tissue disorder characterized by progressive kyphoscoliosis, congenital muscular hypotonia, marked joint hypermobility, and severe skin hyperextensibility and fragility. Deficiency of lysyl hydroxylase 1 (LH1) due to mutations of PLOD1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) gene has been identified as the pathogenic cause of kEDS (kEDS-PLOD1). Up to now, kEDS-PLOD1 has not been reported among Chinese population. We reported a 17-year-old Chinese male patient presenting with hypotonia, joint hypermobility and scoliosis was referred to our hospital. After birth, he was found to have severe hypotonia leading to delayed motor development. Subsequently, joint hypermobility, kyphoscoliosis and amblyopia were found. Inguinal hernia was found at age 5 years and closed by surgery. At the same time, he presented with hyperextensible and bruisable velvety skin with widened atrophic scarring after minor trauma. Dislocation of elbow joint was noted at age of 6 years. Orthopedic surgery for correction of kyphoscoliosis was performed at age 10 years. His family history was unremarkable. Physical examination revealed elevated blood pressure. Slight facial dysmorphologies including high palate, epicanthal folds, and down-slanting palpebral fissures were found. He also had blue sclerae with normal hearing. X-rays revealed severe degree of scoliosis and osteopenia. The Echocardiography findings were normal. Laboratory examination revealed a slightly elevated bone turnover. Based on the clinical manifestations presented by our patient, kEDS was suspected. Genetic analysis revealed a novel homozygous missense mutation of PLOD1 (c.1697 G&gt;A, p.C566Y) (NM_000302.4), confirming the diagnosis of kEDS-PLOD1. Corresponding heterozygous mutation was detected in his parents. This variant is possibly causative for kEDS because it was predicted to be “PROBABLY DAMAGING” with a score 0.999 by Polyphen‐2, “AFFECT PROTEIN FUNCTION” with a score 0.00 by SIFT, and “disease causing” by Mutation Taster.
DOI: 10.3535/5nv-6j7-gy7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/lf3-lee-cal
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/16w-2hq-pjr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qz2-wbl-245
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t5f-jvx-lth
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19100089.v2
title: The Mellin Transform to Manage Quadratic Forms in Normal Random Variables

description: The problem of computing the distribution of quadratic forms in normal variables has a long tradition in the statistical literature. Well-established numerical algorithms that deal with this task rely on the inversion of Fourier transforms or series representations. In this article, the Mellin transform is proposed as a tool to compute both the density and the cumulative distribution functions of a positive definite quadratic form: an outline of the numerical algorithm is presented, providing details on the error analysis. The algorithm’s characteristics allow us to propose an efficient way to compute the random variables’ quantiles. From the theoretical point of view, the analytic properties of the Mellin transform are exploited to provide a novel representation of the distribution of the ratio of independent quadratic forms as a mixture of beta random variables of the second kind. Moreover, algorithms are proposed for computations related to ratios of both independent and dependent quadratic forms. The methods are tested and compared to popular numerical algorithms in terms of computational times and accuracy. The R package QF implementing all the proposed algorithms is also made available. Supplementary materials for this article are available online.