cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kdg5gh
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonchopisthus higmani Mead, 1959"
 ]
}

 The dataset includes 55 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059540-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxldnx
title: Occurrence Download

description: A dataset containing 84866 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Database of Native Plants in Taiwan"
 ]
}

 The dataset includes 84866 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001924-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2f93hv
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calycobolus heudelotii (Baker ex Oliv.) Heine"
 ]
}

 The dataset includes 610 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076279-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jdya6k
title: Occurrence Download

description: A dataset containing 233655 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Persicaria amphibia (L.) Gray"
 ]
}

 The dataset includes 233655 records from 525 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010498-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eq5uxk
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophichthus melanoporus Kanazawa, 1963"
 ]
}

 The dataset includes 49 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059554-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yrep2b
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bulbophyllum vestitum Bosser"
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076266-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm9now
title: Occurrence Download

description: A dataset containing 21627 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gypaetus barbatus (Linnaeus, 1758)"
 ]
}

 The dataset includes 21627 records from 125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035558-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qndmh
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenetrium vemae Kensley, 1980"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132965-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frvhqe
title: Occurrence Download

description: A dataset containing 6039 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Graydidascalus brachyurus (Kuhl, 1820)"
 ]
}

 The dataset includes 6039 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003386-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9zf68
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Catasticta striata (Eitschberger & Racheli, 1998)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0217131-200613084148143/datasets/export for details.
DOI: 10.15468/dl.bs9gzw
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chromolaena bangii (Rusby) R.M.King & H.Rob."
 ]
}

 The dataset includes 25 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151528-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krefwx
title: Occurrence Download

description: A dataset containing 81667 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Data-set of Moth Specimen from TESRI"
 ]
}

 The dataset includes 81667 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001935-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpb4a6
title: Occurrence Download

description: A dataset containing 21181 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tilia americana L."
 ]
}

 The dataset includes 21181 records from 244 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0235920-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30727298
title: Identification of health-associated and pathogen-suppressive oak microbiota

description: A subset of bacterial isolates obtained from the 13 healthiest oak trees in a cohort of 150, and bacterial isolates exhibiting suppressive actitivty against bacteria associated with acute oak decline were identified via Sanger sequencing of the 16S rRNA gene.In this data set, <code>.qmd</code> files contain the processing of sequences obtained by Sanger sequencing and the construction of phylogenetic trees and Venn diagrams.<code>.html</code> files contain the rendered HTML versions of the .qmd files.Directory <code>inputs</code> contains all RDS, CSV, and XLSX files required to run the <code>.qmd</code> scriptsA <code>README.txt</code> file is also provided with an explanation of file contents and software requirements.
DOI: 10.6084/m9.figshare.30727298.v3
title: Identification of health-associated and pathogen-suppressive oak microbiota

description: A subset of bacterial isolates obtained from the 13 healthiest oak trees in a cohort of 150, and bacterial isolates exhibiting suppressive actitivty against bacteria associated with acute oak decline were identified via Sanger sequencing of the 16S rRNA gene.In this data set, <code>.qmd</code> files contain the processing of sequences obtained by Sanger sequencing and the construction of phylogenetic trees and Venn diagrams.<code>.html</code> files contain the rendered HTML versions of the .qmd files.Directory <code>inputs</code> contains all RDS, CSV, and XLSX files required to run the <code>.qmd</code> scriptsA <code>README.txt</code> file is also provided with an explanation of file contents and software requirements.
DOI: 10.6084/m9.figshare.30727298.v2
title: Identification of health-associated and pathogen-suppressive oak microbiota

description: A subset of bacterial isolates obtained from the 13 healthiest oak trees in a cohort of 150, and bacterial isolates exhibiting suppressive actitivty against bacteria associated with acute oak decline were identified via Sanger sequencing of the 16S rRNA gene.In this data set, .qmd files contain the processing of sequences obtained by Sanger sequencing and the construction of phylogenetic trees and Venn diagrams..html files contain the rendered HTML versions of the .qmd files.input_files.zip contains all RDS, CSV, and XLSX files required to run the .qmd scripts
DOI: 10.15468/dl.c2fypw
title: Occurrence Download

description: A dataset containing 4231642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "EventDate 1996-01-01-2026-01-01",
 "GadmGid is GBR",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1996-2025"
 ]
}

 The dataset includes 4231642 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058389-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6634688
title: Data for: Polystyrene nanoplastics differentially influence the outcome of infection by two microparasites of the host Daphnia magna

description: This dataset supports the findings of the study 'Polystyrene nanoplastics differentially influence the outcome of infection by two microparasites of the host Daphnia magna', published in Philosophical Transactions of the Royal Society B (https://doi.org/10.1098/rstb.2022.0013).
DOI: 10.5281/zenodo.6634687
title: Data for: Polystyrene nanoplastics differentially influence the outcome of infection by two microparasites of the host Daphnia magna

description: This dataset supports the findings of the study 'Polystyrene nanoplastics differentially influence the outcome of infection by two microparasites of the host Daphnia magna', published in Philosophical Transactions of the Royal Society B (https://doi.org/10.1098/rstb.2022.0013).
DOI: 10.15468/dl.tzby7j
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((77.72180899999999 29.40129, 77.641227 29.395712, 77.562656 29.379118, 77.488052 29.351921, 77.41927200000001 29.314799, 77.358019 29.268675, 77.305806 29.214698, 77.263914 29.154206, 77.233363 29.0887, 77.21488600000001 29.0198, 77.208915 28.949207, 77.21557300000001 28.878661, 77.234669 28.809897, 77.26571199999999 28.744603, 77.30792 28.68438, 77.360241 28.6307, 77.421385 28.584874, 77.489851 28.54802, 77.563962 28.521036, 77.641914 28.504578, 77.72180899999999 28.499048, 77.801703 28.504578, 77.879655 28.521036, 77.953767 28.54802, 78.022232 28.584874, 78.083376 28.6307, 78.13569699999999 28.68438, 78.177905 28.744603, 78.20894800000001 28.809897, 78.228044 28.878661, 78.234702 28.949207, 78.228731 29.0198, 78.21025400000001 29.0887, 78.179703 29.154206, 78.137811 29.214698, 78.085598 29.268675, 78.024345 29.314799, 77.95556500000001 29.351921, 77.880961 29.379118, 77.80239 29.395712, 77.72180899999999 29.40129))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 41 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058410-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30764180
title: Randomly assembled SynComs suppress <i>B. goodwinii</i> and <i>G. quercinecans in vitro</i>

description: The pathogen-suppresive effect of randomly assembled SynComs was tested against fluoresencetly labelled strains of the bacteria associated to acute oak decline, <i>Brenneria goodwinii </i>(RFP-Bg) and <i>Gibbsiella quercinecans </i>(GFP-Gq). The fluorescence of the target bacteria was tracked over a 48 h growth period and analyised in this scripts.The .qmd and its respective rendered version (.html) contain the processing of the fluorescence data (i.e. baseline-corrections and data transformation), creation of growth curves, calculation of area under the curve and modelling of the data. A folder with the input files (i.e. fluorescence values per each bacterium, list of isolates in the SynComs, co-culture controls) are provided too. A README.txt file is also provided with a description of file contents and software requirements.
DOI: 10.6084/m9.figshare.30764180.v2
title: Randomly assembled SynComs suppress <i>B. goodwinii</i> and <i>G. quercinecans in vitro</i>

description: The pathogen-suppresive effect of randomly assembled SynComs was tested against fluoresencetly labelled strains of the bacteria associated to acute oak decline, <i>Brenneria goodwinii </i>(RFP-Bg) and <i>Gibbsiella quercinecans </i>(GFP-Gq). The fluorescence of the target bacteria was tracked over a 48 h growth period and analyised in this scripts.The .qmd and its respective rendered version (.html) contain the processing of the fluorescence data (i.e. baseline-corrections and data transformation), creation of growth curves, calculation of area under the curve and modelling of the data. A folder with the input files (i.e. fluorescence values per each bacterium, list of isolates in the SynComs, co-culture controls) are provided too. A README.txt file is also provided with a description of file contents and software requirements.
DOI: 10.6084/m9.figshare.30764180.v1
title: Randomly assembled SynComs suppress <i>B. goodwinii</i> and <i>G. quercinecans in vitro, </i>two bacteria associated with necrotic tissue in acute oak decline.

description: The pathogen-suppresive effect of randomly assembled SynComs was tested against fluoresencetly labelled strains of the bacteria associated to acute oak decline, <i>Brenneria goodwinii </i>(RFP-Bg) and <i>Gibbsiella quercinecans </i>(GFP-Gq). The fluorescence of the target bacteria was tracked over a 48 h growth period and analyised in this scripts.The .qmd and its respective rendered version (.html) contain the processing of the fluorescence data (i.e. baseline-corrections and data transformation), creation of growth curves, calculation of area under the curve and modelling of the data. A folder with the input files (i.e. fluorescence values per each bacterium, list of isolates in the SynComs, co-culture controls) are provided too.
DOI: 10.6084/m9.figshare.30780128
title: SynCom inoculation suppresses <i>B. goodwinii</i> and <i>G. quercinecans</i> in oak seedlings and logs

description: SynComs were inoculated in oak seedlings and logs, in two independent trials. Seedlings and logs were challenged with the bacteria associated with acute oak decline, <i>Brenneria goodwinii </i>and <i>Gibbsiella quercinecans</i>. After 10 weeks of incubation in planta, swabs were collected from inoculation points, and stem pieces (chips) were collected for microbial back-isolation. Pathogen load (<i>B. goodwinii </i>and <i>G. quercinecans</i>) was analyzed in swabs and chip cultures via qPCR assays and 16S rRNA community profiling (read abundance).In this data set, .qmd files 1 and 2 correspond to the curation and pre-processing of 16S rRNA community profiling, and file 3 corresponds to the compiled analysis of qPCR and sequencing data. A directory containing the corresponding rendered files in html format is also provided (html_files). Input files to run the .qmd files are contained in directories general_inputs, phyloseq, supplementary_in_silico_pcr, swarm and taxonomy.Statistical analysis of 16S rRNA community profiling and qPCR data are provided in separate directories (stats_qpcr and stats_16S), which contain .qmd files, their corresponding rendered .html file and the inputs necessary to run the statistics code.A README.txt file with contents description and system requirements is also provided.
DOI: 10.6084/m9.figshare.30780128.v2
title: SynCom inoculation suppresses <i>B. goodwinii</i> and <i>G. quercinecans</i> in oak seedlings and logs

description: SynComs were inoculated in oak seedlings and logs, in two independent trials. Seedlings and logs were challenged with the bacteria associated with acute oak decline, <i>Brenneria goodwinii </i>and <i>Gibbsiella quercinecans</i>. After 10 weeks of incubation in planta, swabs were collected from inoculation points, and stem pieces (chips) were collected for microbial back-isolation. Pathogen load (<i>B. goodwinii </i>and <i>G. quercinecans</i>) was analyzed in swabs and chip cultures via qPCR assays and 16S rRNA community profiling (read abundance).In this data set, .qmd files 1 and 2 correspond to the curation and pre-processing of 16S rRNA community profiling, and file 3 corresponds to the compiled analysis of qPCR and sequencing data. A directory containing the corresponding rendered files in html format is also provided (html_files). Input files to run the .qmd files are contained in directories general_inputs, phyloseq, supplementary_in_silico_pcr, swarm and taxonomy.Statistical analysis of 16S rRNA community profiling and qPCR data are provided in separate directories (stats_qpcr and stats_16S), which contain .qmd files, their corresponding rendered .html file and the inputs necessary to run the statistics code.A README.txt file with contents description and system requirements is also provided.
DOI: 10.6084/m9.figshare.30780128.v3
title: SynCom inoculation suppresses <i>B. goodwinii</i> and <i>G. quercinecans</i> in oak seedlings and logs

description: SynComs were inoculated in oak seedlings and logs, in two independent trials. Seedlings and logs were challenged with the bacteria associated with acute oak decline, <i>Brenneria goodwinii </i>and <i>Gibbsiella quercinecans</i>. After 10 weeks of incubation in planta, swabs were collected from inoculation points, and stem pieces (chips) were collected for microbial back-isolation. Pathogen load (<i>B. goodwinii </i>and <i>G. quercinecans</i>) was analyzed in swabs and chip cultures via qPCR assays and 16S rRNA community profiling (read abundance).In this data set, .qmd files 1 and 2 correspond to the curation and pre-processing of 16S rRNA community profiling, and file 3 corresponds to the compiled analysis of qPCR and sequencing data. A directory containing the corresponding rendered files in html format is also provided (html_files). Input files to run the .qmd files are contained in directories general_inputs, phyloseq, supplementary_in_silico_pcr, swarm and taxonomy.Statistical analysis of 16S rRNA community profiling and qPCR data are provided in separate directories (stats_qpcr and stats_16S), which contain .qmd files, their corresponding rendered .html file and the inputs necessary to run the statistics code.A README.txt file with contents description and system requirements is also provided.
DOI: 10.15468/dl.zbhdzy
title: Occurrence Download

description: A dataset containing 34877 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-6.25617 41.0851,27.48128 41.0851,27.48128 72.26782,-6.25617 72.26782,-6.25617 41.0851))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Poa alpina"
 ]
}

 The dataset includes 34877 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058411-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/rux8iw
title: PAN-00006552 - coin/coin-related, Claudius II Gothicus (268-270)/Tetricus I (271-274), naar, antoninianus

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00006552&lt;/p&gt;
description: Modified: 2025-05-26T09:02:36+02:00
DOI: 10.15468/dl.fyxej7
title: Occurrence Download

description: A dataset containing 275520 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pistacia lentiscus",
 "HasCoordinate is true"
 ]
}

 The dataset includes 275520 records from 370 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058373-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17977252
title: Lahr, Hirsch-Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.5281/zenodo.17977251
title: Lahr, Hirsch-Apotheke

description: Historical questionnaire/s 1924/1948 and index cards, partly selected enclosures regarding the history of a German pharmacy, catalogued via Kalliope portal (Historischer Fragebogen 1924/1948 und Karteikarten, ggf. gemeinfreie Anlagen zur Apothekengeschichte; als Katalog dient das Nachlassportal Kalliope):

https://kalliope-verbund.info/ead?ead.id=DE-611-BF-70963

Please note: The Kalliope catalogue entry might indicate related material in the archival folder which cannot be published due to copyright or other legal restrictions (NB: Das Katalogisat bei Kalliope kann auch auf Materialien - teils erheblichen Umfangs - verweisen, die aus archiv- oder urheberrechtlichen Gründen nicht veröffentlicht werden dürfen).
DOI: 10.15468/dl.mdd9c7
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mizuhopecten yessoensis, Patinopecten yessoensis, Pecten brandtii, Pecten yessoensis, Placopecten yessoensis)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 108 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058413-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k6ngyv
title: Occurrence Download

description: A dataset containing 2253 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "Geometry POLYGON((-6.25617 41.0851,27.48128 41.0851,27.48128 72.26782,-6.25617 72.26782,-6.25617 41.0851))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantago atrata"
 ]
}

 The dataset includes 2253 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058412-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.