cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5886166
title: Additional file 2: of Characterizing the transcutaneous electrical recruitment of lower leg afferents in healthy adults: implications for non-invasive treatment of overactive bladder

description: Raw Data.xlsx. Summary of raw data obtained from each participant that characterized the stimulation threshold values (Raw Data tab) and the visual analogue scale values (Comfort Ratings tab). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5886166.v1
title: Additional file 2: of Characterizing the transcutaneous electrical recruitment of lower leg afferents in healthy adults: implications for non-invasive treatment of overactive bladder

description: Raw Data.xlsx. Summary of raw data obtained from each participant that characterized the stimulation threshold values (Raw Data tab) and the visual analogue scale values (Comfort Ratings tab). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.5886016
title: Additional file 2: Table S1. of Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

description: Summary of SNPs used in study of SNP annotation to imputation outcome. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.5886016.v1
title: Additional file 2: Table S1. of Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

description: Summary of SNPs used in study of SNP annotation to imputation outcome. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.5885995
title: Additional file 9: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S8. Detailed annotation on assembled full-length transcripts for antibody heavy and light chains in all identified B cells. (CSV 8 kb)
DOI: 10.6084/m9.figshare.5885995.v1
title: Additional file 9: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S8. Detailed annotation on assembled full-length transcripts for antibody heavy and light chains in all identified B cells. (CSV 8 kb)
DOI: 10.6084/m9.figshare.5885986
title: Additional file 8: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S7. Gene ontology enrichment of genes from cluster3 with null hypothesis rejected at FDRâ =â 0.05 by Breusch-Pagan test. (CSV 668 bytes)
DOI: 10.6084/m9.figshare.5885986.v1
title: Additional file 8: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S7. Gene ontology enrichment of genes from cluster3 with null hypothesis rejected at FDRâ =â 0.05 by Breusch-Pagan test. (CSV 668 bytes)
DOI: 10.6084/m9.figshare.5885977
title: MOESM6 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 6. Â Sorghum leaf lipid experimental data from three extraction methods.
DOI: 10.6084/m9.figshare.5885977.v1
title: MOESM6 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 6. Â Sorghum leaf lipid experimental data from three extraction methods.
DOI: 10.6084/m9.figshare.5885971
title: Additional file 4: of Circadian succession of molecular processes in living tissues

description: Gene Ontology Localizations. (XLSX 167Â kb)
DOI: 10.6084/m9.figshare.5885971.v1
title: Additional file 4: of Circadian succession of molecular processes in living tissues

description: Gene Ontology Localizations. (XLSX 167Â kb)
DOI: 10.6084/m9.figshare.5885968
title: MOESM5 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 5. Â Arabidopsis thaliana leaf lipid experimental data from four extraction methods.
DOI: 10.6084/m9.figshare.5885968.v1
title: MOESM5 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 5. Â Arabidopsis thaliana leaf lipid experimental data from four extraction methods.
DOI: 10.6084/m9.figshare.5885965
title: Additional file 7: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S6. Genes with null hypothesis rejected at FDRâ =â 0.05 by Breusch-Pagan test. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5885965.v1
title: Additional file 7: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S6. Genes with null hypothesis rejected at FDRâ =â 0.05 by Breusch-Pagan test. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.5885953
title: Additional file 3: of Circadian succession of molecular processes in living tissues

description: Gene Ontology Clusters. (XLSX 298Â kb)
DOI: 10.6084/m9.figshare.5885953.v1
title: Additional file 3: of Circadian succession of molecular processes in living tissues

description: Gene Ontology Clusters. (XLSX 298Â kb)
DOI: 10.6084/m9.figshare.5885944
title: MOESM4 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 4. Â Sorghum leaf lipid experimental parameters. Sorghum lipids were analyzed by precursor and neutral loss scanning on an Applied Biosytems 4000 QTRAP mass spectrometer.
DOI: 10.6084/m9.figshare.5885944.v1
title: MOESM4 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 4. Â Sorghum leaf lipid experimental parameters. Sorghum lipids were analyzed by precursor and neutral loss scanning on an Applied Biosytems 4000 QTRAP mass spectrometer.
DOI: 10.6084/m9.figshare.5885935
title: Additional file 6: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S5. Output (top 20 hit) from GSEA on genes with negative log2(fold change) between cells from fresh and preserved tissues. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.5885935.v1
title: Additional file 6: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S5. Output (top 20 hit) from GSEA on genes with negative log2(fold change) between cells from fresh and preserved tissues. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.5885923
title: Additional file 2: of Circadian succession of molecular processes in living tissues

description: Gene Ontology Charts. (XLSX 224Â kb)
DOI: 10.6084/m9.figshare.5885923.v1
title: Additional file 2: of Circadian succession of molecular processes in living tissues

description: Gene Ontology Charts. (XLSX 224Â kb)
DOI: 10.6084/m9.figshare.5885920
title: MOESM3 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 3. Â Internal standards used in sorghum lipid profiling.
DOI: 10.6084/m9.figshare.5885920.v1
title: MOESM3 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 3. Â Internal standards used in sorghum lipid profiling.
DOI: 10.6084/m9.figshare.5885917
title: Additional file 5: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S4. Output (top 20 hit) from GSEA on genes with positive log2(fold change) between cells from fresh and preserved tissues. (XLSX 108 kb)
DOI: 10.6084/m9.figshare.5885917.v1
title: Additional file 5: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S4. Output (top 20 hit) from GSEA on genes with positive log2(fold change) between cells from fresh and preserved tissues. (XLSX 108 kb)
DOI: 10.6084/m9.figshare.5885908
title: MOESM2 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 2. Â Arabidopsis leaf lipid experimental parameters. Arabidopsis lipids were analyzed by multiple reaction monitoring on a Waters Xevo TQS mass spectrometer.
DOI: 10.6084/m9.figshare.5885908.v1
title: MOESM2 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 2. Â Arabidopsis leaf lipid experimental parameters. Arabidopsis lipids were analyzed by multiple reaction monitoring on a Waters Xevo TQS mass spectrometer.
DOI: 10.6084/m9.figshare.5885905
title: Additional file 4: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S3. Gene sets enriched with FDR q value â ¤0.05 from GSEA. (CSV 732 bytes)
DOI: 10.6084/m9.figshare.5885905.v1
title: Additional file 4: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S3. Gene sets enriched with FDR q value â ¤0.05 from GSEA. (CSV 732 bytes)
DOI: 10.6084/m9.figshare.5885902
title: Additional file 9: Table S8. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Pathway analysis of the gene expression correlations using GSEA method and TRANSPATH pathway ontology. (XLSX 103Â kb)
DOI: 10.6084/m9.figshare.5885902.v1
title: Additional file 9: Table S8. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Pathway analysis of the gene expression correlations using GSEA method and TRANSPATH pathway ontology. (XLSX 103Â kb)
DOI: 10.6084/m9.figshare.5885893
title: Additional file 3: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S2. GO ontology of genes differentially expressed in the putative cluster (cluster 8). (CSV 1 kb)
DOI: 10.6084/m9.figshare.5885893.v1
title: Additional file 3: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S2. GO ontology of genes differentially expressed in the putative cluster (cluster 8). (CSV 1 kb)
DOI: 10.6084/m9.figshare.5885890
title: MOESM1 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 1. Â Internal standards used in Arabidopsis lipid profiling using multiple reaction monitoring.
DOI: 10.6084/m9.figshare.5885890.v1
title: MOESM1 of An efficient modified method for plant leaf lipid extraction results in improved recovery of phosphatidic acid

description: Additional file 1. Â Internal standards used in Arabidopsis lipid profiling using multiple reaction monitoring.
DOI: 10.6084/m9.figshare.5885887
title: Additional file 8: Table S7. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Results of correlation analysis of gene expression in 52 cancer cell lines and their sensitivity (IC50) value towards Mdm2 inhibitor AMGMDS3. We found 168 genes positively correlated with IC50 (insensitivity to the Mdm2 inhibitor) and 227 genes negatively correlated (p-value
DOI: 10.6084/m9.figshare.5885887.v1
title: Additional file 8: Table S7. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Results of correlation analysis of gene expression in 52 cancer cell lines and their sensitivity (IC50) value towards Mdm2 inhibitor AMGMDS3. We found 168 genes positively correlated with IC50 (insensitivity to the Mdm2 inhibitor) and 227 genes negatively correlated (p-value
DOI: 10.6084/m9.figshare.5885878
title: Additional file 2: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S1. Differentially expressed genes in the putative cluster (cluster 8). (CSV 1 kb)
DOI: 10.6084/m9.figshare.5885878.v1
title: Additional file 2: of High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

description: Table S1. Differentially expressed genes in the putative cluster (cluster 8). (CSV 1 kb)
DOI: 10.6084/m9.figshare.5885875
title: Additional file 5: of Exome analysis of carotid body tumor

description: Total number of deleterious somatic mutations normalized by gene length in 52 CBT samples. (XLSX 132Â kb)
DOI: 10.6084/m9.figshare.5885875.v1
title: Additional file 5: of Exome analysis of carotid body tumor

description: Total number of deleterious somatic mutations normalized by gene length in 52 CBT samples. (XLSX 132Â kb)
DOI: 10.6084/m9.figshare.5885872
title: Additional file 7: Table S6. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Result of F-Match analysis of the promoters of 62 genes up-regulated in Nutlin-3 insensitive cell lines. We show the list of transcription factors whose sites were detected as overrepresented in the promoters. We also show the respective PWMs linked to these transcription factors, the Yes/No ration of the site frequency and the LogFC for the expression of the transcription factor gene. In Tab CMA we give results of CMA analysis. 22 TF were revealed. (XLSX 59Â kb)
DOI: 10.6084/m9.figshare.5885872.v1
title: Additional file 7: Table S6. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Result of F-Match analysis of the promoters of 62 genes up-regulated in Nutlin-3 insensitive cell lines. We show the list of transcription factors whose sites were detected as overrepresented in the promoters. We also show the respective PWMs linked to these transcription factors, the Yes/No ration of the site frequency and the LogFC for the expression of the transcription factor gene. In Tab CMA we give results of CMA analysis. 22 TF were revealed. (XLSX 59Â kb)
DOI: 10.6084/m9.figshare.5885866
title: Additional file 9: Table S9. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criteria 8-10 results. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5885866.v1
title: Additional file 9: Table S9. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criteria 8-10 results. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.5885857
title: Additional file 6: Table S5. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: List of 62 genes up-regulated in Nutlin-3 insensitive cell lines and matching the disease category â Causal Lung Neoplasmsâ . This list is used for the promoter analysis. (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.5885857.v1
title: Additional file 6: Table S5. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: List of 62 genes up-regulated in Nutlin-3 insensitive cell lines and matching the disease category â Causal Lung Neoplasmsâ . This list is used for the promoter analysis. (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.5885854
title: Additional file 8: Table S8. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 7 results. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.5885854.v1
title: Additional file 8: Table S8. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 7 results. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.5885848
title: Additional file 4: of Exome analysis of carotid body tumor

description: Mutation load (ML) â number of computationally filtered deleterious somatic mutations per megabase of coding region across all samples. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.5885848.v1
title: Additional file 4: of Exome analysis of carotid body tumor

description: Mutation load (ML) â number of computationally filtered deleterious somatic mutations per megabase of coding region across all samples. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.5885839
title: Additional file 7: Table S7. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 6 results. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.5885839.v1
title: Additional file 7: Table S7. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 6 results. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.5885836
title: Additional file 5: Table S4. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Results of mapping of upregulated genes on the HumanPSDÂŽ disease ontology for all three conditions of Nutlin-3 treatment. The results contain the number of matched genes with the respective disease the calculated p-value and adjusted p-value of such match. (XLSX 78Â kb)
DOI: 10.6084/m9.figshare.5885836.v1
title: Additional file 5: Table S4. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Results of mapping of upregulated genes on the HumanPSDÂŽ disease ontology for all three conditions of Nutlin-3 treatment. The results contain the number of matched genes with the respective disease the calculated p-value and adjusted p-value of such match. (XLSX 78Â kb)
DOI: 10.6084/m9.figshare.5885833
title: Additional file 3: of Exome analysis of carotid body tumor

description: List of evaluated potentially driver mutations and their detailed description. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.5885833.v1
title: Additional file 3: of Exome analysis of carotid body tumor

description: List of evaluated potentially driver mutations and their detailed description. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.5885821
title: Additional file 6: Table S6. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criteria 4 and 5 results. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.5885821.v1
title: Additional file 6: Table S6. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criteria 4 and 5 results. (XLSX 36Â kb)
DOI: 10.6084/m9.figshare.5885815
title: Additional file 4: Table S3. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Results of gene set enrichment analysis (GSEA) of the obtained three gene expression profiles of differences between sensitive and insensitive lung cancer cell lines. For that we used geneXplain platform and applied the pathways ontology of TRANSPATHÂŽ database. (XLSX 147Â kb)
DOI: 10.6084/m9.figshare.5885815.v1
title: Additional file 4: Table S3. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Results of gene set enrichment analysis (GSEA) of the obtained three gene expression profiles of differences between sensitive and insensitive lung cancer cell lines. For that we used geneXplain platform and applied the pathways ontology of TRANSPATHÂŽ database. (XLSX 147Â kb)
DOI: 10.6084/m9.figshare.5885809
title: Additional file 2: of Exome analysis of carotid body tumor

description: Pathways and conditions associated with theÂ selected genes. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.5885809.v1
title: Additional file 2: of Exome analysis of carotid body tumor

description: Pathways and conditions associated with theÂ selected genes. (XLSX 57Â kb)
DOI: 10.6084/m9.figshare.5885803
title: Additional file 5: Table S5. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 3 results. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5885803.v1
title: Additional file 5: Table S5. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 3 results. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5885794
title: Additional file 3: Table S2. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: GO analysis of all 7 sets of genes - Up- and Down- regulated genes upon treatment by Nutlin-3 in two concentrations 5 μM and 30 μM of Nutlin-3 (p-value 0.58 (which corresponds to FC &gt; 1.5) for up-regulated and LogFC
DOI: 10.6084/m9.figshare.5885794.v1
title: Additional file 3: Table S2. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: GO analysis of all 7 sets of genes - Up- and Down- regulated genes upon treatment by Nutlin-3 in two concentrations 5 μM and 30 μM of Nutlin-3 (p-value 0.58 (which corresponds to FC &gt; 1.5) for up-regulated and LogFC
DOI: 10.6084/m9.figshare.5885785
title: Additional file 1: of Exome analysis of carotid body tumor

description: High impact mutation types included in theÂ analysis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5885785.v1
title: Additional file 1: of Exome analysis of carotid body tumor

description: High impact mutation types included in theÂ analysis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.5885779
title: Additional file 4: Table S4. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 2 results. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.5885779.v1
title: Additional file 4: Table S4. of Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks

description: Criterion 2 results. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.5885773
title: Additional file 2: Table S1. of Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

description: Normalized expression values of all genes with detected expression in the studies conditions and mapped to Ensembl. In the tab â Nsen vs Senâ we give the results of Limma analysis of the LogFC between Nutlin-3 insensitive (Nsen) and sensitive cell lines. (XLSX 3291Â kb)