cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2536105
title: Supplementary File S2: Plasmids for independently tunable, low- noise gene expression

description: Supplementary File S2 README

2018-Jan-09

"Plasmids for independently tunable, low- noise gene expression"

João P. N. Silva, Soraia Vidigal Lopes, Diogo J. Grilo, Zach Hensel

This file describes the contents of the supplementary file for this manuscript. Python scripts were run in a Python 3 environment on OSX with various scientific python packages updated as of December 2018. With minor modifications for any similar environment it should be possible to generate Figures 1, 2, and 4 in the manuscript from these scripts and raw data.

Contents:

\dna sequences<br>
    \pDG101.gb Annotated DNA sequence in genbank format of plasmid pDG101<br>
    \pJS101.gb Annotated DNA sequence in genbank format of plasmid pJS101 (AddGene #118280)<br>
    \pJS102.gb Annotated DNA sequence in genbank format of plasmid pJS102 (AddGene #118281)<br>
    \pZH501.gb Annotated DNA sequence in genbank format of plasmid pZH501<br>
    \pZH509.gb Annotated DNA sequence in genbank format of plasmid pZH509 (AddGene #102664)<br>
    \pZH713.gb Annotated DNA sequence in genbank format of plasmid pZH713<br>
    \ZHX99.gb Annotated DNA sequence in genbank format for E. coli MG1655 chromosome insertion mutant ZHX99<br>
    <br>
\data<br>
    \DG FCS Data: Raw flow cytometry data from BioRad S3 sorted by day and experimental condition; file name format: plasmid_inducer-concentration_inducer-units_inducer.fcs<br>
    \pJS101 pDG101 independence<br>
        \"quick scope intensity.ijm" Fiji macro used to extract average fluorescence intensities<br>
        \"Microscope Data\" Microscope data analyzed using the above Fiji macro; directory names indicate ATc and IPTG concentrations for each experimentation condition<br>
        \"intensity analysis\"<br>
            X_nM_ATc_Y_uM_IPTG.csv files: Exported CSV data from Fiji for each condition<br>
            backgrounds.csv: Average intensity for every condition, image frame, and color for background subtraction<br>
        \"images for Figure 4": Image stack with raw images used to generate Fig 4A and 4B

\code<br>
    \fcsAnalysis_final_181228.py step-wise script for generating Figures 1 and 2 from FCS data<br>
    \fcsCalcDirectory181228.py script containing functions for FCS analysis and figure generation<br>
    \fcsImages PDF figures output by FCS analysis scripts<br>
    \FlowCal-master Distribution of the FlowCal library used in analysis for this manuscript<br>
    \scopeAnalysisWorkflow190107.py step-wise script for generating Figures 4C from cell fluorescence microscopy data in CSV format exported from Fiji<br>
    \scopeCalcDirectory190107.py script containing functions for microscopy data analysis and figure generation
DOI: 10.5258/soton/d0768
title: MATLAB codes for predicting fast charging station usage, user waiting times and a battery thermal model

description: This dataset holds the MATLAB codes for the PhD thesis "Overcoming the Electricity Grid Capacity and Battery Thermal Limitations of Electric Vehicle Fast Charging using Stationary Energy Storage and Cell Thermal Modelling" by Thomas Bryden.The files for Chapter 3 include codes to predict daily demand at fast charging stations. The files for Chapter 4 include codes to determine electric vehicle waiting times at fast charging stations. The files for Chapter 5 include codes for a battery thermal model as well as least squares regression to determine heat capacity of cells.This research was funded by EPSRC (Centre for Doctoral Training in Energy Storage and its Applications. EP/L016818/1 and ELEctrochemical Vehicle Advanced TEchnology (ELEVATE). EP/M009394/1).
DOI: 10.5258/soton/d0769
title: Dataset for 'Turbulent boundary layers over multiscale rough patches'

description: This dataset supports the paper:
Christina Vanderwel and Bharathram Ganapathisubramani, "Turbulent boundary layers over multiscale rough  patches”, Boundary Layer Meteorology.
DOI: 10.5258/soton/d0751
title: Dataset for "Efficiency and intensity noise of an all-fiber optical parametric oscillator"

description: Dataset for article "Efficiency and intensity noise of an all-fiber optical parametric oscillator" by I. Begleris and P. Horak, accepted for publication in Journal of the Optical Society of America B (2019)The set contains all the raw data generated by computer simulations that are analysed and plotted in the paper.
DOI: 10.5258/soton/d0703
title: Dataset for paper "Effect of rail dynamics on curve squeal under constant friction conditions"

description: Dataset supports:
Ding, B., Squicciarini, G., & Thompson, D. (2019). Effect of rail dynamics on curve squeal under constant friction conditions. Journal of Sound and Vibration, 442, 183-199
DOI: 10.5258/soton/d0757
title: Dataset: Evaluating the Effect of Feedback from Different Computer Vision Processing Stages

description: Dataset supports:
J. Kittley-Davies, A. Alqaraawi, R. Yang, E. Costanza, A. Rogers, and S. Stein. 2019. Evaluating the Effect of Feedback from Different Computer Vision Processing Stages: A Comparative Lab Study. In CHI Conference on Human Factors in Computing Systems Proceedings (CHI 2019), May 4–9, 2019, Glasgow, Scotland UK. ACM, New York, NY, USA, 12 pages. https://doi.org/10.1145/3290605.3300273
DOI: 10.5258/soton/d0537
title: Dataset for 'The Dielectric Effect of Xylene on an Organoclay-Containing Composite'

description: The dataset supports the journal paper Shaw, A. V., Vaughan, A., & Andritsch, T. (2018). The Dielectric Effect of Xylene on an Organoclay-Containing Composite. IEEE Transactions on Dielectrics & Electrical Insulation.These data were collected in addition to the data collected for the conference paper submitted in July 2018 with the same title. This journal paper combines some work from the conference paper with additional work to form a journal article.
DOI: 10.5281/zenodo.2536129
title: TESS-DECEMBER-2018

description: Measurements taken by the European Photometer Network (Project STARS4ALL). December 2018
DOI: 10.5281/zenodo.2536130
title: TESS-DECEMBER-2018

description: Measurements taken by the European Photometer Network (Project STARS4ALL). December 2018
DOI: 10.17632/ds2bxttpf8.1
title: Data for: Job Polarization and the Natural Rate of Unemployment in the United States

description: The data used for figures in Tuzemen (2018).
DOI: 10.17632/mrddpdzd57.1
title: Data for: Time Barrier to Export for OECD Countries

description: This folder contains research data files associated to the article “Time Barrier to Export for OECD Countries” by Wenchao Li. • “data_li.dta” is the main dataset • “baseline.do” is a do-file, which produces the results in Table 2 • “define_var.do” is a do-file, which is called for in other do-files to define variables • “baseline.xls” and “baseline.txt” are outputs of “baseline.do” • “effect.do” is a do-file, which produces the results in Table 3 • “effect.xls” is the output of “effect.do” • “geogr_master.dta” contains a vector of bilateral variables • “robustness.do” is a do-file, which produces the results in Appendix Table A3 • “robustness.xls” and “robustness.txt” are outputs of “robustness.do”
DOI: 10.17632/9fmdct3vxc.1
title: Data for: Fluctuation-theorem method of measuring a particle's mass without knowing its shape or density

description: All the time-series data of the particle positions used in the demonstration experiment are provided in .txt files. There are 69 files, one for each particle. The data are in three columns: time (seconds), x-position (meters), y-position (meters). The zero coordinate for (x,y) corresponds to the top-left corner of the camera's field of view, while (0.00973, -0.00608) is the bottom-right corner.
DOI: 10.17632/f3tspkdzys.1
title: Data for: Two Pool Periods on Large Sand Bed Rivers: Mega-Pools on the Madeira and Mississippi

description: Thalweg profile of the Mississippi
DOI: 10.5281/zenodo.2536198
title: The evolution of teaching and anti-teaching: journal submission

description: A mathematica notebook and C++ code to solve for the model described in the submitted article "The evolution of teaching and anti-teaching".
DOI: 10.5281/zenodo.2536199
title: The evolution of teaching and anti-teaching: journal submission

description: A mathematica notebook and C++ code to solve for the model described in the submitted article "The evolution of teaching and anti-teaching".
DOI: 10.17632/x9bjw6yg2j.1
title: Data for: A systems-based assessment of Palestine's current and future infrastructure requirements
DOI: 10.17632/s99cxjkd4w.1
title: Data for: CHEMOMETRIC ANALYSIS OF MESOAMERICAN OBSIDIAN SOURCES

description: TABLE S.2 Chemical concentrations obtained from the analyzed samples of the geological sources.
DOI: 10.17632/zcycfbk39x.1
title: Data for: CHEMOMETRIC ANALYSIS OF MESOAMERICAN OBSIDIAN SOURCES

description: Spectral data matrix obtained from the XRF analysis of the obsidian sources samples. The rows refer to the obsidian samples and each column is associated with a channel or energy region of the spectrum
DOI: 10.17632/4jmwr92ss9.5
title: Data for: Pleiotropic effects of methanogenic coal bioconversion on the structure of microbial communities and physicochemical properties of coal

description: The data of the tested chemical components and the ANOVA analysis results for chemical components of coals coal samples before and after bioconversion.
DOI: 10.17632/gv2kdv7j23.1
title: Data for: Target discovery of chlorogenic acid derivatives from the flower buds of Lonicera macranthoides and their MAO B inhibitory mechanism

description: Fig. S1-S10. HRESIMS, UV, IR and NMR spectra of compound 1 Fig. S11-S19. HRESIMS, UV, IR and NMR spectra of compound 2 Fig. S20-S29. HRESIMS, UV, IR and NMR spectra of compounds 3 Fig. S30-S32. HRESIMS and NMR spectra of compound 4 Fig. S33-S34. HRESIMS and NMR spectra of compound 1a Table 1S. All putative targets of CGAs Table 2S. Top 9 clusters associated with AD targets of CGAs according to the enrichment analysis based on GO and DAVID annotation Fig. S35 The residue contributions of MAO B to Compound 6 binding
DOI: 10.17632/p794fz62cn.1
title: Data for: Submerged plus maze: A novel test for studying anxiety-like behaviour in fish

description: Data for: Submerged plus maze: A novel test for studying anxiety-like behaviour in fish
DOI: 10.17632/5yprwjwnx8.1
title: Data for: Modelling cropping periods of grain crops at the global scale

description: The data correspond to figures in Appendix G: Global maps of computed sowing and harvest dates. The ncdf4 files contain simulated sowing and harvest average dates (day of the year) for the period 1980-1999, for the entire global land grid. Sowing dates are simulated as from Waha et al. (2012). Harvest dates are simulated as from Minoli et al (this publication).
DOI: 10.17632/mhvdpcb6dx.1
title: Data for: Finding the bees knees: a conceptual framework and systematic review of the mechanisms of pollinator-mediated facilitation.

description: Results from keyword searches on Web of Science and SCOPUS, as well as the extracted data used to write the systematic literature review.
DOI: 10.17632/z856trfgvz.1
title: Data for: Resource Scarcity, Technological Progress, and Stochastic Growth

description: Matlab code for some figures.
DOI: 10.17632/6n7w972yxb.1
title: Code for: Matching the LenStar Optical Biometer to A-Scan Ultrasonography for use in Small Animal Eyes

description: The file contains the MATLAB (MathWorks) code that was used to obtain the A-scan ultrasonography-matched refractive indices. To replicate our fitting, save the MATLAB file and the data file in the same folder and follow the instructions given in the MATLAB file. To obtain refractive indices for different species, change the sound velocities in the MATLAB file according to your species and generate a new data file. If your ultrasound measurements do not resolve CT and ACD, follow the column structure of our data file. If you have separate ultrasound time delays for CT and ACD, generate a data file with the following columns from left to right: OPLs of CT, ACD, LT and VCD followed by ultrasound time delays of CT, ACD, LT, and VCD. In our MATLAB code, we assume that CT and ACD can (cannot) be resolved form the ultrasound measures if the number of columns of the data file is even (odd).
DOI: 10.17632/s93mnzxnfx.1
title: Data for: Matching the LenStar Optical Biometer to A-Scan Ultrasonography for use in Small Animal Eyes

description: The data file contains the tree shrew data (paired A-scan ultrasonography and LenStar measurements) used in this study. Each row represents one paired data set. The columns represent from left to right: OPLs of CT, ACD, LT and VCD followed by ultrasound time delays of ASD, LT, and VCD.
DOI: 10.17632/tj4c98zyb8.1
title: Data for: The impact of psychological traits on performance in sequential tournaments: Evidence from a tennis field experiment

description: Tennis field experiment
DOI: 10.17632/2n595bbm3v.3
title: Data for: CloneSpot: Fast detection of Android Repackages

description: This dataset contains a collection of Google Play applications' meta-data in JSON format collected in September 2017. The applications were available publicly in Google Play at the time of upload and they are identified by their Google Play IDs. In addition to that field the following ones are provided: - Title: The application title as in Google Play - Category: Application category and URL - Description: Application description - Developer Name: Name and URL of the application developer - One to five star rating counts (fiveStar, fourStar...): The number of users giving the application one to five stars - Recent changes: Changes applied to the application in its latest update - Total votes: Count of the votes given to the applications - Date and time of collection: When were the applications collected
DOI: 10.17632/j36vwzxzyc.1
title: Data for: Measuring multivariate risk preferences in the health domain

description: Full dataset
DOI: 10.17632/86gscm84tt.1
title: Data for: Technical and economic efficiency of methods for extracting genomic DNA from plant parasitic nematodes

description: Concentration and degree of purity of DNA extracted by method.
DOI: 10.17632/j22gsfg52g.1
title: Data for: Novel column generation-based optimization approach for poly-pathway kinetic model applied to CHO cell culture

description: Datasets generated during the study.
DOI: 10.17632/ybc5m64rwz.1
title: Data for: Quantitative Validation of Ames IR Intensity and New Line Lists for 32/33/34S16O2, 32S18O2 and 16O32S18O

description: Three high-resolution IR line sets are reported for 32/33/34S16O2, 32S18O2 and 16O32S18O isotopologues combining the experimental line positions or Effective Hamiltonian (EH) models that experimental spectroscopists published after 2009 and the theoretical IR intensities taken from Ames-296K IR Line lists. The “New Lines Sets” include experimentally measured line positions, the “Expanded Line Sets” are based on rovibrational levels derived from experimental line positions and reliable ground state (GS) EH models; the “Ames + MARVEL” sets utilize the levels reported in a recent MARVEL analysis. Compared to the limited data, 7(2) segments for 32S16O2 (34S16O2), in HITRAN, these line sets have significantly improved coverage up to 4000 cm-1. Some of the missing bands can be traced to the unpublished experimental data. The isotopologue consistency of the intensity data in these line sets will help identify the uncertainties and defects in the experimental dipole models, as shown in the comparison of the 1+2 and 2+3 bands. These line sets are good candidates for the next HITRAN update, if line shape parameters are available. The line sets and latest updates can be downloaded from the Ames Molecular Spectroscopic Database at http://huang.seti.org
DOI: 10.17632/z5v69k8x48.1
title: Data for: High-frequency repetitive transcranial magnetic stimulation (rTMS) improves neurocognitive function in bipolar disorder

description: This is a spss file that contains the raw data collected from the study and a preliminary analysis of the data. The contents of the study are as follows: Objective: Bipolar disorder (BD) patients present widespread and significant neurocognitive impairments in all stages of this disorder. Repetitive transcranial magnetic stimulation (rTMS) has been used to improve clinical outcomes of common psychiatric diseases, such as depression, anxiety disorders, schizophrenia, and BD. Whether rTMS can improve cognitive function in BD patients remains unclear. The present study explored the regulatory effects of rTMS on cognitive function in patients with BD. Methods: Fifty-two eligible subjects with BD were randomly assigned to receive 10 consecutive weekdays of active or sham rTMS via a high-speed magnetic stimulator with a figure-of-eight coil. In the active rTMS group, a total of 25,000 stimuli were applied over the left dorsolateral prefrontal cortex at 110% of the motor threshold. The sham group received corresponding sham stimulation. Clinical manifestations and cognitive function were assessed using a modified 24-item Hamilton Depression Rating Scale (HDRS), the Young Mania Rating Scale (YMRS), and the MATRICS Consensus Cognitive Battery (MCCB). Results: Ten consecutive weekdays of high-frequency active rTMS improved scores on the Wechsler Memory Scale-III Spatial Span, and the MCCB Category Fluency subtest, without intolerable adverse effects. No significant difference in HDRS or YMRS scores was found between groups. Conclusions: Short-term rTMS can improve cognitive function in BD patients.
DOI: 10.17632/76s6sjyzk5.3
title: Data for: Post-caldera pumice cones of the Payún Matrú caldera, Payenia, Argentina: morphology and deposits characteristics

description: Whole-rock chemical analyses of samples of pumice cones located in the Payún Matrú caldera, Payenia, Argentina
DOI: 10.17632/8pc5sg43cx.1
title: Data for: Metastable misfit dislocations during thin film growth: the case of Cu on Ru(0001)

description: 082703c-i.mov: Real space movies of the decay of the dislocations at different temperatures. The field of view is 5um. 082703k.mov Low-energy diffraction images of an island with time. In all the movies the temperature is indicated as mV of a WRe thermocouple on the lower left corner. The electron energy is indicated in the upper left corner. The time of the experiment is shown in the upper right corner.
DOI: 10.17632/9rrjbnvmkm.1
title: Data for: INVESTIGATING THE SUBSURFACE STRUCTURE OF THE MAIN CRATER OF THE PROPOSED SIRENTE METEORITE CRATER FIELD (CENTRAL ITALY): NEW CLUES FROM REFLECTION SEISMICS

description: High resolution seismic reflection data in SEG2 format, collected using an off-end spread geometry with a geophone spacing of 2 m, a source spacing of 2 m and an offset distance of 6 m, by performing a roll-along sequence with 12 active channels.
DOI: 10.17632/6528cmytmc.1
title: Data for: Substrate heating effects on structural and ferromagnetic resonance properties of Co40Fe40B20 thin films

description: Data files contain sample name and raw data of first derivative ferromagnetic resonance experiments. The pxp data files are igor pro files which have all of the plots and raw data used to fit the curves. Vibrating sample magnetometry curves are included as well for most samples. The ferromagnetic material being studied was Co40Fe40B20.
DOI: 10.17632/ffg8fv5ph5.1
title: Data for: A phase II, multicenter, single-arm trial of eribulin as first-line therapy for aggressive taxane-pretreated HER2-negative metastatic breast cancer patients: The MERIBEL study

description: A phase II, multicenter, single-arm trial of eribulin as first-line therapy for aggressive taxane-pretreated HER2-negative metastatic breast cancer patients: The MERIBEL study
DOI: 10.17632/75smfhgwkc.1
title: Data for: Can Venous Blood Samples Be Used For Apnea Challenge Test in Determination of Death By Neurological Criteria in Children?

description: Comparing the rise of venous pCO2 to that of arterial pCO2 during apnea challenge test
DOI: 10.17632/j96dmmsxrg.1
title: Appendix II: Compositional Distributions and Evolutionary Processes for the Near-Earth Object Population: Results from the MIT-Hawaii Near-Earth Object Spectroscopic Survey (MITHNEOS)

description: Tabulation of Taxonomic and Principal Component Analysis for near-Earth objects observed in the MIT-Hawaii Near-Earth Object Spectroscopic Survey (MITHNEOS)
DOI: 10.17632/9y9m332shw.1
title: Data for: Early Cretaceous (Valanginian) brachiopods from the Rosablanca Formation, Colombia, South America: Biostratigraphic significance and paleogeographic implications

description: TABLE S1. Morphological data on Sellithyris elizabetha sp. nov. and other Valanginian—Hauterivian species of Sellithyris compiled in this study.
DOI: 10.17632/cv2yjw9bs7.1
title: Data for: CETARTIODACTYLA: UPDATING A TIME-CALIBRATED MOLECULAR PHYLOGENY
DOI: 10.17632/ffhxhm8s9j.1
title: Data for: Effect of sodium dichloroacetate on apoptotic gene expression in human leukemia cell lines

description: Supplementary materials: 1 and 2 show all positive correlations between changes of gene expression generated using Spearman’s analysis for all 4 cell lines after 24, 48 and 72 hours of exposure of cells to DCA. Supplementary material 3 shows Log RQ values for all examined genes in four cell lines after 24, 48 and 72 hours. That values were used to conduct all statistical analysis of gene expression changes. Supplementary material 4 shows an example profile of gene expression changes in CCRF/CEM cell line.
DOI: 10.17632/h288jnkx65.1
title: Data for: Effect of sodium dichloroacetate on apoptotic gene expression in human leukemia cell lines

description: Supplementary material 1 and 2 show all positive and negative correlations between changes of gene expression generated using Spearman’s analysis for all 4 cell lines after 24, 48 and 72 hours of exposure of cells to DCA. Supplementary material 3 show Log RQ values for all examined genes in four cell lines after 24, 48 and 72 hours. RQ values were used to conduct statistical analysis. Supplementary material 4 shows an example of gene expression changes profile for CCRF/CEM cell line.
DOI: 10.17632/n4n6wkr437.1
title: Data for: Relics of a Paleoproterozoic orogen: new petrological, phase equilibria and geochronological studies on high-pressure pelitic granulites from the Pingdu-Laiyang areas, southwest of the Jiaobei terrane, North China Craton

description: Table S1. SIMS zircon U-Pb results. Table S2. LA-ICM-MS monazite U-Pb results. Table S3. Rare earth element compositions of monazites (ppm). Table S4. Rutile geochemistry (ppm) analyzed by EPMA and the calculated temperatures. Table S5. Summary of metamorphic P-T conditions and geochronological data of metamorphic rocks along the Jiao-Liao-Ji belt.
DOI: 10.17632/4xx4h9yp2f.1
title: Data for: Effect of sodium dichloroacetate on apoptotic gene expression in human leukemia cell lines

description: Supplementary material 1 and 2 show respectively positive and negative correlations between changes of gene expression generated using Spearman’s analysis for all 4 cell lines after 24, 48 and 72 hours of exposure of cells to DCA. Supplementary material 3 shows log RQ values for all examined genes in four cell lines after 24, 48 and 72 hours. RQ values were used in statistical analysis. Supplementary material 4 shows a profile of gene expression changes for CCRF/CEM cell line after 24-hour exposure to IC50.
DOI: 10.17632/d9dxy29yzr.1
title: Data for: Effect of sodium dichloroacetate on apoptotic gene expression in human leukemia cell lines

description: Supplementary material 1 and 2 show respectively positive and negative correlations between changes of gene expression generated using Spearman’s analysis for all 4 cell lines after 24, 48 and 72 hours of exposure of cells to DCA. Supplementary material 3 shows log RQ values for all examined genes in four cell lines after 24, 48 and 72 hours. RQ values were used in statistical analysis. Supplementary material 4 shows a profile of gene expression changes for CCRF/CEM cell line after 24-hour exposure to IC50.