cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.404fh/1
title: SNP information for loci identified using Restriction-site-associated DNA sequencing in the Ugandan red colobus

description: The file contains the SNP information for the loci identified using Restriction-site-associated DNA sequencing in the Ugandan red colobus. The text contains the following information:  Locus (number assign to the locus by the program STACKS); Position (position of the SNP); SNP (identifies the change of the base in the SNP position); Consensus sequence (consensus sequence for the locus); number of individuals (number of individuals where the locus has been genotyped). It also includes the genotypes for all the individuals. If the individual could not be genotyped a "-" will appear. Some loci present more than one SNP, in those cases, the SNP information will appear in consecutive rows. For example locus 4 has SNPs in positions 86 (row number 2 in the table) and 89 (row number 3 in the table). In those cases the genotypes for the individuals always show the complete genotype. Heterozygotes are indicated with a "/". For example A/G is heterozygote for 1 SNP, CA/GG is heterozygote for 2 SNPs, GA/GG is heterozygote for 1 SNP out of 2.
DOI: 10.5061/dryad.j958j/1
title: CROPCLASS-2.0 software

description: Add-on for ENVI5.0 which develop semiautomatically the crop classification based on census parcel and multiemporal remote images
DOI: 10.5061/dryad.j958j/2
title: Instalation CROPCLASS-2.0 Decembre2014 ENGLISH

description: Objectives, achievments and installation procedure of CROPCLASS-2.0 software (an extension of ENVI5.0)
DOI: 10.5061/dryad.j958j/3
title: Odd parcels FINAL data   156 parcels  last  07April2014

description: Field data set of the article
DOI: 10.5061/dryad.p9743/1
title: Table S1. Description of rodents collected for the study
DOI: 10.5061/dryad.p9743/2
title: Table S2. Composition of flea pools
DOI: 10.5061/dryad.p9743/3
title: Table S3. Results of PCR assays for the Rickettsia-DNA screening in flea pools
DOI: 10.5061/dryad.p9743/4
title: Aligned sequences from positive samples
DOI: 10.5061/dryad.p9743/5
title: Tree files MEGA
DOI: 10.5061/dryad.10sg7/1
title: Garrick_etal_MEC2015_Survey_Data

description: The survey database is comprised of data reported in empirical phylogeography papers that satisfied search / inclusion criteria described in the main text of Garrick et al. (2015, Mol. Ecol.). Detailed descriptions of column headers are given in the "read me" Metadata file.
DOI: 10.5061/dryad.16hc8/1
title: Anopheles farauti 4 SNP information

description: This file contains all the SNPs we identified from our genome assembly of Anopheles farauti 4, including information about the location, reference allele frequency, and coverage of each SNP.
DOI: 10.5061/dryad.16hc8/2
title: Anopheles punctulatus SNP information

description: This file contains all the SNPs we identified from our genome assembly of Anopheles punctulatus, including information about the location, reference allele frequency, and coverage of each SNP.
DOI: 10.5061/dryad.4vt08/1
title: mtDNA alignment

description: Nexus formatted file containing the partial (fragmented) mtDNA genome data.
DOI: 10.5061/dryad.4vt08/2
title: ddRADseq data

description: Compressed folder containing all of the ddRADseq data assemblies in phylip format. Each *.phy file contains one concatenated alignment of the ddRADseq data. The folders are organized at three levels: 1) homology filter (80 or 90 or 95), 2) paralog filter (1 or 3), 3) minimum individuals (3, 4, 5, 6, 7, 8, 9, or 10).
DOI: 10.5061/dryad.4vt08/3
title: Sequence capture data (all 584 captured loci)

description: Sequence capture loci in nexus file format. Files are named according to locus name. Also includes a concatenated matrix of  the 584 loci.
DOI: 10.5061/dryad.4vt08/4
title: Sequence capture data (471 complete loci)

description: A subset of the sequence capture loci that were captured for all species included in the study. The files are in nexus file format. Files are named according to locus name. Also included is a concatenated matrix of the 471 loci.
DOI: 10.5061/dryad.j958j/4
title: Ventillas 156 parcels data & variables definition

description: Field data and variables definition
DOI: 10.5061/dryad.jh21r/1
title: Simón-Porcar_etal_2015_AJB

description: Genetic database of 31 populations of Narcissus papyraceus  in the western Mediterranean, genotyped with 8 microsatellite markers. Genotyped individuals are either long-styled (L) or short-styled (S).
DOI: 10.5061/dryad.1hj8f/1
title: Plant resistance reduces the strength of consumptive and non-consumptive effects of predators on aphids
DOI: 10.5061/dryad.35n9f/1
title: Insect food uptake rates

description: We compiled a data set of consumption and assimilation rates through ontogeny for different insects. Data was retrieved from a comprehensive literature search of insect consumption and assimilation through ontogeny, which resulted in data for 41 insects from 6 orders being included in the present analysis (Coleoptera (n = 14), Lepidoptera (n =14), Hemiptera (n = 6), Orthoptera (n =5), Diptera (n =1), and Neuroptera (n = 1)). Where possible, data was extracted from tables or requested from the original authors of the study, otherwise figures were digitized so that data points could be extracted.
DOI: 10.5061/dryad.40s3g/1
title: Supplementary Table S1

description: List of samples, with GenBank accession numbers
DOI: 10.5061/dryad.40s3g/2
title: RSOS-140364 contents and captions ESMs

description: Contents and captions to data files.
DOI: 10.5061/dryad.40s3g/3
title: Supplementary Table S2

description: Measurements of Madanga ruficollis and the other species inclade A in Fig. 1.
DOI: 10.5061/dryad.fr075/1
title: Microclimate data

description: Recorded soil temperatures for two sets of sites in Europe, from two different periods. Accompanied by summaries of modelled climate data from public sources.
DOI: 10.5061/dryad.n1ks4/1
title: clerc_exp_1
DOI: 10.5061/dryad.40s3g/11
title: MadaCytbShort

description: Xml file for analysis in Fig. S4.
DOI: 10.5061/dryad.40s3g/12
title: Photos AMNH

description: Photos of Madanga ruficollis and Amaurocichla bocagii from the American Museum of Natural History, including x-rays of Madanga ruficollis.
DOI: 10.5061/dryad.40s3g/4
title: Table S3 PCA Madanga

description: Output from PCA of morphological characters.
DOI: 10.5061/dryad.40s3g/5
title: Fig. S1. MB Madanga Passeriformes AllLoci 4parts

description: Relationships of broad selection of Passeriformes, including Madanga ruficollis and Amaurocichla bocagii, based on concatenated ND2, ODC, myo and CHD1Z, analysed by Bayesian inferenece, partitioned by locus.
DOI: 10.5061/dryad.40s3g/6
title: PassMadangaAllLoci

description: Alignment and settings for analysis shown in Fig. S1.
DOI: 10.5061/dryad.40s3g/7
title: Fig. S2. MB Madanga All Loci 7parts

description: Bayesian inference tree of Madanga ruficollis, Amaurocichla bocagii and representatives of all clades of Anthus and Motacilla found in previous studies, including all “small pipits” (except A. petrosus, which was previously considered conspecific with A. spinoletta). Based on mitochondrial cytb and ND2, and nuclear ODC, myo and CHD1Z sequence data analysed in seven partitions (by locus and codon; see MadangaAllLoci.nxs).
DOI: 10.5061/dryad.40s3g/8
title: MadangaAllLoci

description: Alignment and settings for analysis shown in Fig. S2.
DOI: 10.5061/dryad.40s3g/9
title: Fig. S3. MB single-locus analyses

description: Single-locus analyses of the same taxa as in Supplementary Figure S2.
DOI: 10.5061/dryad.40s3g/10
title: Fig. S4. BEAST Madanga Cytb

description: Chronogram for the same taxa as in Supplementary Figures 2 and 3, based on cytb sequences and a relaxed molecular clock (2.1% / million years), inferred by Bayesian inference, with 95% highest posterior density intervals for the node ages.
DOI: 10.5061/dryad.57b80/1
title: Table 1 Adams_et_al_2015

description: Table 1.  Site locations, sampling dates and effort, numbers of sculpin captured, and habitat data for spring and summer samples from 2006 - 2009.  For the Clark Fork River, we arbitrarily set "distance to mouth" = 0.00 for reach 1. Latitude and longitude are given in decimal degrees in the NAD83 datum.
DOI: 10.5061/dryad.57b80/2
title: Table 2 Adams_et_al_2015

description: Table 2.—Complete list of sample reaches, locations, and sculpin captured at each reach during summers 2007-9. Reaches sampled only in summer 2006 are included although not shown on maps. “Distance to mouth” is the stream distance (km) from a reach to the mouth of the stream or river on which the reach is located. For Clark Fork River reaches, distances are from the downstream-most reach. Reaches are numbered from downstream to upstream in each stream. Reaches where we recorded stream temperatures in either 2007 or 2008 are indicated in the thermograph column. Latitude and longitude are given in decimal degrees in the NAD83 datum. The total number of seconds shocked (Total seconds) and the number (N) of samples in which time was recorded are given. “Fish sample N” is the number of summer samples made during 2007-9 (maximum = 3). Where values for “Fish sample N” exceed those for “Seconds N”, electrofishing time was not recorded for all samples at the reach. Reaches with N = 0 for fish samples were sampled either in summer 2006 or spring 2007, but not in any summer from 2007-9. The numbers of Rocky Mountain Sculpin (RMS), Columbia Slimy Sculpin (CSS) and sculpin-present (not identified to taxon because of their small size or uncertainty due to the presence of Cedar sculpin [U. schitsuumsh]) are given. Percent (%) RMS and CSS are the percentages of each taxon, disregarding any unidentified sculpin. Sculpin status indicates the sculpin category to which the reach was assigned for temperature and habitat analyses. Reaches with both RMS and CSS are indicated as syntopic (Syn) and those with only unidentified sculpins as present (Pres). Other abbreviations are as follows: fishing access site (FAS); highway (Hwy.); Montana Fish, Wildlife, and Parks (FWP); US Forest Service (FS).
DOI: 10.5061/dryad.57b80/3
title: Table 3 Adams_et_al_2015

description: Table 3.  Minimum, average, and maximum daily water temperature values for each reach during summer 2007.  Stream names and reach codes are as in Tables 1 and 2.  Sites are organized by sculpin group: no sculpin (none); Rocky Mountain sculpin (RMS) or Columbia slimy sculpin (CSS) only; or both species (syntopic). Daily summary statistics (mean, sample size [N], SD, and SE) by group are given for each temperature metric.  Numbers in blue were estimated based on linear regressions (see text).
DOI: 10.5061/dryad.d3v78/1
title: WM_anurans_phylogeny

description: The file “WM_anurans.nex” contains the phylogeny hypothesis employed in Nexus format. We used the tree of Roelants et al. 2007 as a time-scaled reference to calibrate the phylogeny of all amphibians (Pyron and Wiens 2011) using the function congruify.phylo (Eastman et al. 2013) of geiger R-package (Harmon et al. 2008). We then trimmed the ultrametric phylogeny obtained to match the list of taxa studied.
DOI: 10.5061/dryad.d3v78/2
title: WM_anurans_traits

description: The file “WM_anurans_traits.csv” is a comma-delimited file that contains the trait values analysed in Enriquez-Urzelai et al. 2015. These consist of raw measurements for each individual included in the study. ‘SPECIES’ column corresponds to the species scientific name, ‘SP’ column contains the species abbreviated name, ‘SVL’ snout-vent length, ‘TFL’ tibiofibula length, ‘FL’ femur length, ’T.F’ tibiofibula to femur ratio, ‘LOC’ the mode of displacement. We also provide the collection number, the entrance number, and the collection name. Here is the key for modes of displacement (LOC):JT = Jumper terrestrialJA = Jumper arborealWH = Walker/hopperBWH = Burrower/walker/hopper
DOI: 10.5061/dryad.d3v78/3
title: READ_ME

description: Information about the provided data files
DOI: 10.5061/dryad.dk68t.2
title: Data from: Transcriptional profiling at whole population and single cell levels reveals somatosensory neuron molecular diversity
DOI: 10.5061/dryad.dk68t.2/1.2
title: Comparison of SNS-Cre/TdT vs. Parv-Cre/TdT neuron expression profiles

description: Differential expression analysis of microarray data from SNS-Cre/TdTomato+ neurons (n=4) vs. Parv-Cre/TdTomato+ neurons (n=4).  Transcripts are ranked by fold-change, with the following information given: Affymetrix ID, genebank accession number, gene symbol, description, average RMA normalized levels, standard deviation, fold-change, p-value and FDR.
DOI: 10.5061/dryad.j6m20/1
title: Time to Plasmodium vivax infection

description: Individuals with reappearance of pure Plasmodium vivax infection were retreated with either chloroquine only (70 individuals ) or chloroquine and primaquine (43 individuals) and were followed up by microscopy until detection of Plasmodium vivax blood stage parasites.
DOI: 10.5061/dryad.142m0/1
title: Hahn_Orrock_Oikos_DATA

description: Data associated with Hahn and Orrock (2015) Oikos
DOI: 10.5061/dryad.5p2b1/1
title: Genotypic values of the 48 accessions in response to six competition treatments.

description: 'Treatment': A,C, P, S, T and V stand for intraspecific competition, absence of competition and interspecific competition with four species frequently associated with A. thaliana in natural plant communities (i.e. Poa annua, Stellaria media, Trifolium repens and Veronica arvensis). 'Accession': name of the 48 TOU-A1 accessions used in this study. 'ecotype_id' stands for the identity of the 48 accessions for running GWA mapping (see Horton et al. Nature Genetics 2012). FITTOT, BT, INT, RP, FT_diam, H1S, HD, RAMBB, RAMPB_S and COMP have been described in the main text.
DOI: 10.5061/dryad.dk68t.1
title: Data from: Transcriptional profiling at whole population and single cell levels reveals somatosensory neuron molecular diversity
DOI: 10.5061/dryad.dk68t.2/2.2
title: Comparison of IB4 positive vs. IB4 negative SNS-Cre/TdT neuron profiles

description: Differential expression analysis of microarray data from IB4+SNS-Cre/TdTomato+ neurons (n=3) vs. IB4-SNS-Cre/TdTomato+ neurons (n=3).  These cells were sorted from the same animals.  Transcripts are ranked by fold-change, with the following information given: Affymetrix ID, genebank accession number, gene symbol, description, average RMA normalized levels, standard deviation, fold-change, p-value and FDR.
DOI: 10.5061/dryad.dt3nm/1
title: Soil and plants 2010

description: Contains data for the first year of the experiment, including soil analyses immediately after inoculation with microbial communities but before planting with plant communities, total biomass data for the first harvest (August 2010) and biomass data for all individual species for the second harvest (October 2010). See ReadMe file for variable names and descriptions.
DOI: 10.5061/dryad.qg258/1
title: Lifetime fecundity

description: Lifetime fecundity and dart reception
DOI: 10.5061/dryad.qg258/2
title: Longevity

description: Longevity and dart reception
DOI: 10.5061/dryad.qg258/3
title: sperm.mass weight

description: Male and female investments and dart reception
DOI: 10.5061/dryad.4v13r/1
title: dataframe

description: Data to replicate analyses in Panzacchi et al 2015, JAE
DOI: 10.5061/dryad.4v13r/2
title: env_raster_brick

description: raster data needed to make maps
DOI: 10.5061/dryad.4v13r/3
title: shapefiles

description: shapefiles of the study area needed to perform the analyses
DOI: 10.5061/dryad.4v13r/4
title: KernelUtilizationDistribution

description: Kernel Utilization distribution of winter and calving locations
DOI: 10.5061/dryad.4v13r/6
title: BBMM_Aust_March_May

description: BBMM_Aust_March_May.tif is a georeferenced raster that can be visualized in QGIS.  It illustrates the results of the Brownian Bridge Movement Model built on wild reindeer locations during the period march-May (i.e. spring migration)
DOI: 10.5061/dryad.dt3nm/2
title: Soil and plants 2011

description: Contains data for the second and final year of the experiment. This includes all soil and vegetation data for the final destructive harvest in October 2011. See ReadMe file for names and description of variables.
DOI: 10.5061/dryad.dt3nm/3
title: Leachates

description: This file contains leachate data for the mesocosms. Leachates were collected non-destructively at 7 dates in 2011. See ReadMe file for names and description of variables.
DOI: 10.5061/dryad.dt3nm/4
title: PLFAs

description: This file contains PLFA profiles for mesocosms, analysed in soil samples from the final destructive harvest on October 2011. See ReadMe file for more information on this file.
DOI: 10.5061/dryad.sp963/1
title: Gonzalez-Suarez_et_al_Dataset
DOI: 10.5061/dryad.tj3pd/1
title: Growth data of inbred and outbred canary nestlings

description: Data was collected on a captive group of canaries. The dataset contains weights of inbred (=parents are full sibling), and outbred (=parents are unrelated) canary chicks until 15 days after hatching. Hatching position, hatch date, nest identity, breeding cluster, survival until day 15, and sexe was additionally noted for each chick.
DOI: 10.5061/dryad.4r668/1
title: Overall Network

description: Overall Network with a threshold of three sightings.
DOI: 10.5061/dryad.4r668/2
title: All Dolphin Sightings

description: Raw data of all of the dolphin sightings for all networks.
DOI: 10.5061/dryad.4r668/3
title: analyse

description: Performs basic network analysis on the specified networks and prints the results to the screen. The analysis includes the calculation of the community structure overlap between network pairs and the calculation of basic network metrics for each network.
DOI: 10.5061/dryad.4r668/4
title: csv2gml

description: Constructs a network from the sightings data using the specified value for threshold. The resulting network is saved as a GML file.
DOI: 10.5061/dryad.4r668/5
title: Forage

description: Forage Network, constructed with a threshold value of three sightings.
DOI: 10.5061/dryad.4r668/6
title: Forage Original

description: Original data on the forage sightings.
DOI: 10.5061/dryad.4r668/7
title: graph_permutations

description: A module for performing randomisation tests on networks in order to test the statistical significance of network metrics.
DOI: 10.5061/dryad.4r668/8
title: Socialise

description: Socialise Network constructed using a threshold value of three sightings.
DOI: 10.5061/dryad.t7g11/1
title: Abundance data

description: Species-level abundance data for Quaternary core samples from Po Plain, Italy. Columns are species and rows are samples. For additional information about this file and related datasets please contact
DOI: 10.5061/dryad.4r668/10
title: Travel

description: Travel Network constructed using a threshold value of three sightings.
DOI: 10.5061/dryad.4r668/11
title: travel_orig

description: All of the sightings for the Travel Network.
DOI: 10.5061/dryad.4r668/9
title: Socialise Original

description: All of the original sightings for the Socialise Network.
DOI: 10.5061/dryad.f267k/1
title: Fig. S1. Cross-shelf transects of nitrate concentrations during the two cruises conducted in August 2010 and June 2011.
DOI: 10.5061/dryad.f267k/2
title: Fig. S2. Determination of real-time PCR efficiencies of Nrt2 group-specific primers (Ch4: Chaetoceros,GSc: Skeletonema).
DOI: 10.5061/dryad.f267k/3
title: Table S1. Detailed information about sampling time, locations, and environmental parameters.
DOI: 10.5061/dryad.f267k/4
title: Table S2. Q-PCR threshold cycles (CT) obtained from the cross-reactivity tests of Skeletonema- and Chaetoceros-specific primers.
DOI: 10.5061/dryad.f267k/5
title: Table S3. Q-RT-PCR threshold cycles (CT) detected from ECS samples (original) and relative expression assays.
DOI: 10.5061/dryad.1f240/1
title: data for analysis of arrival date in year 2, Costs of reproduction

description: data for analysis of arrival date in year 2, data collected in the field during a long-term population monitoring project, data set compiled from original data which are stored in Excel files, description of variables (column headings) can be found in the ReadMe file
DOI: 10.5061/dryad.1f240/2
title: data for analysis of egg laying date in year 2, Cost of reproduction

description: data for analysis of egg laying date in year 2, data collected in the field during a long-term population monitoring project, data set compiled from original data which are stored in Excel files, description of variables (column headings) can be found in the ReadMe file
DOI: 10.5061/dryad.1f240/3
title: data for analysis of the interval between arrival date and egg laying date in year 2, Cost of reproduction

description: data for analysis of the interval between arrival date and egg laying date in year 2, data collected in the field during a long-term population monitoring project, data set compiled from original data which are stored in Excel files, description of variables (column headings) can be found in the ReadMe file
DOI: 10.5061/dryad.1f240/4
title: data for analysis of the number of fledglings produced in year 2, Cost of reproduction

description: data for analysis of the number of fledglings produced in year 2, data collected in the field during a long-term population monitoring project, data set compiled from original data which are stored in Excel files, description of variables (column headings) can be found in the ReadMe file
DOI: 10.5061/dryad.27h01/1
title: phenotype_genotype

description: The file contains 2474 lines, each corresponding to an individual in the study. Columns contain in turn: the individual's identification, (column 1) family (column 2), three measured traits : weight, length and CF (column 3,4 and 5 respectively), type: farm hybrid or wild (column 6), parents (column 7 and 8). The following columns are the SNP genotypes coded as 0101 0102 0201 or 0202.
DOI: 10.5061/dryad.f267k/6
title: Table S4. Calculation of Nrt2 index in the East China Sea.
DOI: 10.5061/dryad.m0s63/1
title: Morand_dryad

description: ID: Identification number of rodent individuals
species: species name of rodents
sex: F (Female), M (Male), unknown (missing information)
age: adult, sub adult, young (based on size and development of genital organs)
accuracy:  accuracy of trapping point using GPS, 1 = inferior to 10 m, 2 = inferior to 100 m
habitat: main habitat of the trapping= lowland, upland (non flooded lands), forest, settlement
habitat2: description of habita
site: locality in Thailand, Laos and Cambodian
longitude: GPS coordinates
latitude: GPS coordinates
elevation: in meter
slope: in %
Distance to forest: in meter
Distance to agriculture steep: in meter
Distance to agriculture flat: in meter
Distance to built-up: in meter
Distance to water: in meter
SHDI: Shannon’s Diversity Index
Patch density: density of patches of the different land cover types
Edge density: density of the contours of all patches
Total_area: in square meter
Water: in % of total area
Agriculture steep: in % of total area
Agriculture flat: in % of total area
Agricultre irrigated: in % of total area
Built-up areas	Forest: in % of total area
DOI: 10.5061/dryad.v147d/1
title: Microsatellite genotypes, GENEPOP format

description: Microsatellite genotypes of Eudyptula minor grouped by colonies throughout Australia
DOI: 10.5061/dryad.v147d/2
title: Mitochondrial haplotype frequencies of Eudyptula minor

description: Mitochondrial haplotype frequencies of Eudyptula minor grouped by colonies in Australia, Arlequin format.
DOI: 10.5061/dryad.1f240/5
title: data for analysis of female survival to year 2, Cost of reproduction

description: data for analysis of female survival to year 2, data collected in the field during a long-term population monitoring project, data set compiled from original data which are stored in Excel files, description of variables (column headings) can be found in the ReadMe file