cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1184/r1/29260508.v1
title: Supplemental Material for "Misuse, Misreporting, Misinterpretation of Statistical Methods in Usable Privacy and Security Papers"

description: This item contains supplemental material referenced by the paper by Tang et al., “Misuse, Misreporting, Misinterpretation of Statistical Methods in Usable Privacy and Security Papers” at the Symposium on Usable Security and Privacy (SOUPS), 2025.<br>It contains two files:List of Papers: The list of all SOUPS papers, along with the year of publication, considered in this study.Tests and Statistics Considered: The table contains the statistical tests considered in this study along with the associated statistics.<br>
DOI: 10.13012/b2idb-5653911_v1
title: RELIX: a dataset of vascular plant species presence for 353 prairie remnants in the Midwestern United States, with prairie remnant metadata

description: This is the core data for RELIX, a dataset of vascular plant species presence for 353 prairie remnants in the Midwestern United States and associated dataset of prairie remnant metadata. The primary data file contains a list of the vascular plant species observed in the prairie remnants, as well as a metadata table with more information about the prairie remnant in question and the species list itself. The data was compiled from a variety of written sources, private and published, chronicling observations made between the mid-twentieth century and 2021. It also contains a supplementary data table of vascular plant species observed in at least 8 of the prairie remnants in RELIX, as well as a list of acknowledgements for the associated manuscript.
DOI: 10.15468/dl.vx6yyg
title: Occurrence Download

description: A dataset containing 28614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-107.61 48.77,-83.69 48.77,-83.69 60.16,-107.61 60.16,-107.61 48.77))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 28614 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025514-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtgkqn
title: Occurrence Download

description: A dataset containing 735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Wasmannia auropunctata",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 735 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025517-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzn4m8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium cepa",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025518-250711103210423/datasets/export for details.
DOI: 10.5281/zenodo.15843677
title: Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution

description: These data accompany the publication 'Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution' by Cook et al 2025, Science. There are .obj files of neuronal and somatic renderings for series14, adobe dimension files for simple viewing, and raw TrakEM2 projects for series14 and series15. All questions should be directed to Steven Cook.
DOI: 10.5281/zenodo.15843678
title: Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution

description: These data accompany the publication 'Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution' by Cook et al 2025, Science. There are .obj files of neuronal and somatic renderings for series14, adobe dimension files for simple viewing, and raw TrakEM2 projects for series14 and series15. All questions should be directed to Steven Cook.
DOI: 10.6084/m9.figshare.29586101
title: MRA00462-25R1 BlastKOALA results, and proteins from NCBI PGAP annotation.

description: Here we report the draft genome of <i>Roseomonas</i> sp. strain GC11 isolated from a freshwater lake, occupying an old gravel quarry, in Belleview, Kentucky. The GC11 genome is 5.25 Mb and contains genes associated with complex carbohydrate degradation and a possible role in nitrite and thiosulfate reduction in aquatic habitats.
DOI: 10.6084/m9.figshare.29586101.v1
title: MRA00462-25R1 BlastKOALA results, and proteins from NCBI PGAP annotation.

description: Here we report the draft genome of <i>Roseomonas</i> sp. strain GC11 isolated from a freshwater lake, occupying an old gravel quarry, in Belleview, Kentucky. The GC11 genome is 5.25 Mb and contains genes associated with complex carbohydrate degradation and a possible role in nitrite and thiosulfate reduction in aquatic habitats.
DOI: 10.15468/dl.4uscn4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium cepa",
 "Country is Malta",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025519-250711103210423/datasets/export for details.
DOI: 10.15468/dl.tkhjt6
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hedysarum carnosum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025521-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/fdjd-je57
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.60707/xqcr-qz40
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.13012/b2idb-7974327_v1
title: Downed Woody Debris Census Data

description: Downed woody debris census data for Trelease Woods collected in the summer of 2022. Dataset contains volume, biomass, decay class, and GPS coordinates for each downed woody debris piece.
DOI: 10.60707/kg4w-pa58
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.60707/85kk-yz75
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.7924/r4ns11g99
title: Data from: Polysialic Acid-Functionalized MAP Scaffolds Promote Regulatory Immune Responses After Ischemic Stroke

description: <strong>*Data embargoed until publication of related article, or up to no more than 1 year from data upload.*</strong>

Abstract: Glycosylation regulates immune and neural functions within the central nervous system (CNS), but its use in biomaterial therapies remains limited due to its structural and biochemical complexity. Among glycans, sialic acids—particularly polysialic acid (PSA), comprising α2,8-linked Neu5Ac residues—exhibit potent immunomodulation through interactions with inhibitory Siglec receptors on immune cells. To harness this potential, we engineered an injectable microporous annealed particle (MAP) scaffold presenting PSA covalently via its reducing end, recapitulating physiological glycan orientation (MAP-PSA). This biomimetic platform demonstrated robust mechanical integrity, stable PSA immobilization, and enzymatic resilience. Systematic screening of sialic acid derivatives identified PSA as uniquely effective at inducing anti-inflammatory polarization of bone marrow-derived macrophages (BMDMs). In vivo, using stroke as a model of CNS injury, MAP-PSA induced a differential immune response compared to MAP alone. MAP-PSA significantly attenuated neutrophil infiltration and inflammatory activation while enhancing reparative macrophage and microglial phenotypes. These immune responses persisted into subacute stages, resulting in sustained inflammation reduction and improved microglial homeostasis. These results demonstrate, for the first time, that PSA anchored to MAP though its reducing end can be used as an anti-inflammatory bioactive signal in vitro and in vivo.
DOI: 10.60707/qq5a-bj78
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.60707/kf6m-8z45
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.22002/k2hy5-7sd84
title: miRNA modules for precise, tunable control of gene expression

description: This dataset contains the raw data, data processing code, and figures for the revised manuscript: "miRNA modules for precise, tunable control of gene expression". Bulk RNAseq raw data is available upon request from the authors.
DOI: 10.60707/hw93-se67
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.15468/dl.a9u5jz
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Picocystis salinarum"
 ]
}

 The dataset includes 36 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025523-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/b7w8-mw93
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.60707/nt34-pz72
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.15468/dl.79y8mj
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenoscyphus fraxineus",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 60 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025525-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/23jx-8w37
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.15468/dl.m5uz8f
title: Occurrence Download

description: A dataset containing 3338 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physaria fendleri"
 ]
}

 The dataset includes 3338 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025522-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/yqpv-ks17
title: NANO SCALE THERMAL CONDUCTIVITY CONTRAST MEASUREMENTS OF BENNU SAMPLE OREX-800055-9 USING AN ATOMIC FORCE MICROSCOPE
DOI: 10.15468/dl.66kh8v
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADL4559"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025524-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28135526
title: Datasets of the article "Per-visit contribution of honeybees and flies to cranberry pollination and fruit yield"

description: Datasets of the article "Per-visit contribution of honeybees and flies to cranberry pollination and fruit yield", including pollinator visitation frequencies, single-visit pollination trials, and fruit yield measurements (fruit set, weight, and seed set).<br>
DOI: 10.6084/m9.figshare.28135526.v1
title: Datasets of the article "Per-visit contribution of honeybees and flies to cranberry pollination and fruit yield"

description: Datasets of the article "Per-visit contribution of honeybees and flies to cranberry pollination and fruit yield", including pollinator visitation frequencies, single-visit pollination trials, and fruit yield measurements (fruit set, weight, and seed set).<br>
DOI: 10.15468/dl.m35psu
title: Occurrence Download

description: A dataset containing 3395422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3395422 records from 285 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025483-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fs54x4
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium cepa",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 146 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025526-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/e2fjt-agg74
title: miRNA circuit modules for tunable dosage compensated gene expression

description: This dataset contains the raw data, data processing codes, and figures for the manuscript 'miRNA circuit modules for tunable dosage compensated gene expression'. Bulk RNAseq raw data is available upon request from the authors.
DOI: 10.15468/dl.jacesz
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex crispus",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025527-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.majhpr
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allium cepa",
 "Country is Peru",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025528-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ue8xrf
title: Occurrence Download

description: A dataset containing 1058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hedysarum coronarium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1058 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025529-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15993039
title: Archive of TRACE-STL version 2.0 and Experiments

description: Archive of TRACE-STL model and experiments for TRACE-STL policy exploraton manuscript, available at: https://arxiv.org/abs/2507.10870
DOI: 10.5281/zenodo.15993040
title: Archive of TRACE-STL version 2.0 and Experiments

description: Archive of TRACE-STL model and experiments for TRACE-STL policy exploraton manuscript, available at: https://arxiv.org/abs/2507.10870
DOI: 10.13012/b2idb-9394312_v1
title: How do drought and heat affect the response of soybean seed yield to elevated O3? An analysis of 15 seasons of free-air O3 concentration enrichment (O3-FACE) studies

description: Over the past 15 years, soybean seed yield response to season-long elevated O3 concentrations [O3] and to year-to-year weather conditions was studied using free-air O3 concentration enrichment (O3-FACE) in the field at the SoyFACE facility in Central Illinois. Elevated [O3] significantly reduced seed yield across cultivars and years. However, our results quantitatively demonstrate that weather conditions, including soil water availability and air temperature, did not alter yield sensitivity to elevated [O3] in soybean.
DOI: 10.15468/dl.fnbaj6
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mischocyttarus",
 "Year 2005-2025"
 ]
}

 The dataset includes 258 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025530-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4te6wp
title: Occurrence Download

description: A dataset containing 7501 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-107.61 48.77,-83.69 48.77,-83.69 60.16,-107.61 60.16,-107.61 48.77))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochrophyta"
 ]
}

 The dataset includes 7501 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025531-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10967076
title: Makarova et al. (2025): Dataset

description: This is a dataset for a publication by M. Makarova, R. Tapia, M. Mohtadi, A. Hou, J. Groeneveld, A. N. Meckler, K.-F. Huang, R.-Y. Tung, Y. Iizuka, and S. L. Ho "Contradictory upper-ocean thermal gradients inferred from inorganic and organic paleothermometers: a case study from the eastern tropical Indian Ocean". The file includes:

Tab 1. Clumped isotopes data from G. ruber, T. trilobus, N. dutertrei, and G. menardii at site GeoB10038-4 (5.94°S, 103.25°E) for two time intervals of 0-2 ka and 19-21 ka;

Tab 2. Mg/Ca data from T. trilobus and G. menardii at site GeoB10038-4 for two time intervals of 0-2 ka and 19-21 ka;

Tab 3. Estimated mean temperatures of surface and subsurface using foraminiferal clumped isotopes, foraminiferal Mg/Ca, UK'37, and TEX86 with confidence intervals at 68% and 95% at sites GeoB10038-4 and MD98-2152 (6.33°S, 103.88°E) for two time intervals of 0-2 ka and 19-21 ka. Data from organic proxies are from Mohtadi et al. (2010; doi:10.1016/j.quascirev.2009.12.006) and Windler et al. (2019; https://doi.org/10.1016/j.epsl.2019.03.038). Mg/Ca data from G. ruber and N. dutertrei are from Mohtadi et al. (2010).
DOI: 10.5281/zenodo.15867185
title: Makarova et al. (2025): Dataset

description: This is a dataset for a publication by M. Makarova, R. Tapia, M. Mohtadi, A. Hou, J. Groeneveld, A. N. Meckler, K.-F. Huang, R.-Y. Tung, Y. Iizuka, and S. L. Ho "Contradictory upper-ocean thermal gradients inferred from inorganic and organic paleothermometers: a case study from the eastern tropical Indian Ocean". The file includes:

Tab 1. Clumped isotopes data from G. ruber, T. trilobus, N. dutertrei, and G. menardii at site GeoB10038-4 (5.94°S, 103.25°E) for two time intervals of 0-2 ka and 19-21 ka;

Tab 2. Mg/Ca data from T. trilobus and G. menardii at site GeoB10038-4 for two time intervals of 0-2 ka and 19-21 ka;

Tab 3. Estimated mean temperatures of surface and subsurface using foraminiferal clumped isotopes, foraminiferal Mg/Ca, UK'37, and TEX86 with confidence intervals at 68% and 95% at sites GeoB10038-4 and MD98-2152 (6.33°S, 103.88°E) for two time intervals of 0-2 ka and 19-21 ka. Data from organic proxies are from Mohtadi et al. (2010; doi:10.1016/j.quascirev.2009.12.006) and Windler et al. (2019; https://doi.org/10.1016/j.epsl.2019.03.038). Mg/Ca data from G. ruber and N. dutertrei are from Mohtadi et al. (2010).
DOI: 10.15468/dl.x6m3dr
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otocinclus hoppei"
 ]
}

 The dataset includes 127 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025532-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.sss.29386640
title: 02014-01

description: Survey of NiO@100{degree sign}C
DOI: 10.60893/figshare.sss.29386640.v1
title: 02014-01

description: Survey of NiO@100{degree sign}C
DOI: 10.13012/b2idb-5333515_v1
title: Stratigraphy-induced localization of microseismicity during CO2 injection in Illinois Basin

description: Dataset with numerical routines and laboratory testing data associated with the manuscript: Bondarenko, N., Podladchikov, Y., Williams‐Stroud, S., & Makhnenko, R. (2025). Stratigraphy‐induced localization of microseismicity during CO2 injection in Illinois Basin. Journal of Geophysical Research: Solid Earth, 130, e2024JB029526. https://doi.org/10.1029/2024JB029526
DOI: 10.15468/dl.7n24kj
title: Occurrence Download

description: A dataset containing 3334 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba cinerea"
 ]
}

 The dataset includes 3334 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025533-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wb49hf
title: Occurrence Download

description: A dataset containing 1001 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Picumnus castelnau Malherbe, 1862)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1001 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015689-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.