cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12825165
title: Additional file 1 of Conditionally essential genes for survival during starvation in Enterococcus faecium E745

description: Additional file 1. Sequences of synthesized DNA fragments for the deletion of usp and exuR and the in trans complementation of usp.
DOI: 10.6084/m9.figshare.12825165.v1
title: Additional file 1 of Conditionally essential genes for survival during starvation in Enterococcus faecium E745

description: Additional file 1. Sequences of synthesized DNA fragments for the deletion of usp and exuR and the in trans complementation of usp.
DOI: 10.6084/m9.figshare.12825150
title: Additional file 4 of Boosting toxic protein biosynthesis: transient in vivo inactivation of engineered bacterial alkaline phosphatase

description: Additional file 4. Nucleotide sequence of the recombinant pBAD_BAP1 construct.
DOI: 10.6084/m9.figshare.12825147
title: Additional file 3 of Boosting toxic protein biosynthesis: transient in vivo inactivation of engineered bacterial alkaline phosphatase

description: Additional file 3. Map, nucleotide and aa sequences of the recombinant pBAD_BAP1 construct. The additional file was prepared using SnapGene software version 4.1 ( http://www.snapgene.com ).
DOI: 10.6084/m9.figshare.12824900
title: R0187_20170918a_videos

description: Rat 0187, skilled reaching data collected on 9/18/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12824843
title: R0187_20170916a_videos

description: Rat 0187, skilled reaching data collected on 9/16/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12824840
title: R0187_20170915a_videos

description: Rat 0187, skilled reaching data collected on 9/15/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12824819
title: Compounds_corrected-files

description: Corrected segmentation data (.csv files) for immunofluorescence images (fixed samples) for embryos from Gata6;Gata4 and Gata6;Nanog allelic series from Saiz et al., eLife 2020;9:e56079
DOI: 10.6084/m9.figshare.12824840.v1
title: R0187_20170915a_videos

description: Rat 0187, skilled reaching data collected on 9/15/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12824801
title: Gene database of Metallosphaera sedula strain ARS50-1

description: <i>Metallosphaera sedula </i>is a highly thermoacidophilic archaeon capable of mobilizing metals from ores, and therefore find use in the field of bioleaching. This resource sought to provide fundamental information about the genetic repertoire of <i>M. sedula</i> ARS50-1 by parsing the annotated genome sequence of the archaeon downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should be useful for molecular cloning workflow to heterologously express genes relevant to bioleaching in established microbial chassis such as <i>Escherichia coli</i>. In addition, the gene database should also inform functional genomics studies seeking to decode the genetic-physiological nexus of this thermoacidophile.
DOI: 10.6084/m9.figshare.12824819.v1
title: Compounds_corrected-files

description: Corrected segmentation data (.csv files) for immunofluorescence images (fixed samples) for embryos from Gata6;Gata4 and Gata6;Nanog allelic series from Saiz et al., eLife 2020;9:e56079
DOI: 10.6084/m9.figshare.12824771
title: A Cross-Session Dataset for Collaborative Brain-Computer Interfaces Based on Rapid Serial Visual Presentation

description: Brain-computer interfaces (BCIs) based on rapid serial visual presentation (RSVP) have been widely used to categorize target and non-target images. However, it is still a challenge to detect single-trial event related potentials (ERPs) from electroencephalography (EEG) signals. Besides, the variability of EEG signal over time may cause difficulties of calibration in long-term system use. To cope with these challenges, collaborative BCIs can be used to improve the detection efficiency by fusing brain activities acquired from multiple subjects. More effective feature extraction and classification algorithms can also contribute to enhance the detection accuracy and cross-session performance. To evaluate the performance of data fusion methods and feature extraction and classification algorithms, datasets are required. However, there is still a lack of cross-session collaborative RSVP-based BCI dataset. This paper presents a cross-session EEG dataset of a collaborative RSVP-based BCI system from 14 subjects, who were divided into 7 groups. All subjects participated in the same experiment twice with an average interval of ~23 days. The experiment consisted of 3 blocks, each containing 14 trials. Each trial presented 100 street scene images at 10Hz (10 images per second), including 4 target images with human and 96 non-target images without human. In the collaborative BCI experiment, two subjects were asked to watch the same RSVP sequences synchronously and make a key-press immediately when they detected a target. The results in data evaluation indicate that adequate signal processing algorithms can greatly enhance the cross-session BCI performance in both individual and collaborative conditions. Besides, compared with individual BCIs, the collaborative methods that fuse information from multiple subjects obtain significantly improved BCI performance. This dataset can be used for developing more efficient algorithms to enhance performance and practicality of a collaborative RSVP-based BCI system.
DOI: 10.6084/m9.figshare.12824738
title: R0187_20170925a_videos

description: Rat 0187, skilled reaching data collected on 9/25/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12824705
title: Supplemental Material

description: Supplemental Material for Rovinsky et al., 2020<br>doi/10.1098/rspb.2020.1537<br>
DOI: 10.6084/m9.figshare.12824738.v1
title: R0187_20170925a_videos

description: Rat 0187, skilled reaching data collected on 9/25/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12824399
title: Swedish IKEA Catalogs 1950-2021

description: This dataset contains basic metadata (year, number of pages, PDF URL) for all Swedish IKEA catalogs (1950-2021). The dataset was manually created from content on ikeacatalogues.ikea.com. The external PDFs can be used under the condition specified by IKEA.<br>The files are also available on the Internet Archive in case they would become unavailable at ikea.com. <br>
DOI: 10.6084/m9.figshare.12824309
title: Stanfit object of the winning model M6b (Zhang & Gläscher, 2020)

description: Stanfit object of the winning model M6b.The object contains MCMC posterior samples for the model estimates.<br>See here for what you can do with stanfit objects: https://cran.r-project.org/web/packages/rstan/vignettes/stanfit-objects.html
DOI: 10.6084/m9.figshare.12824309.v1
title: Stan object of the winning model M6b, Zhang & Gläscher (2020)

description: Stan object of the winning model M6b.The object caontains MCMC posterior samples for the model estimates.
DOI: 10.6084/m9.figshare.12824309.v3
title: Stanfit object of the winning model M6b (Zhang & Gläscher, 2020)

description: Stanfit object of the winning model M6b.The object contains MCMC posterior samples for the model estimates.<br>See here for what you can do with stanfit objects: https://cran.r-project.org/web/packages/rstan/vignettes/stanfit-objects.html
DOI: 10.6084/m9.figshare.12824280
title: Complete dataset from Selection for reduced fear in Red Junglefowl changes brain composition and affects fear memory

description: Complete dataset containing data from the fear habituation test, conditioned place preference test and brain weights.
DOI: 10.6084/m9.figshare.12824309.v2
title: Stan object of the winning model M6b (Zhang & Gläscher, 2020)

description: Stan object of the winning model M6b.The object contains MCMC posterior samples for the model estimates.<br>See here for what you can do with stanfit objects: https://cran.r-project.org/web/packages/rstan/vignettes/stanfit-objects.html
DOI: 10.6084/m9.figshare.12824280.v1
title: Complete dataset from Selection for reduced fear in Red Junglefowl changes brain composition and affects fear memory

description: Complete dataset containing data from the fear habituation test, conditioned place preference test and brain weights.
DOI: 10.6084/m9.figshare.12824249
title: Training set and testing set of ECG signals

description: The collection contains 3121 ECG signals with 5,000 values each. ECG signals were generated using FLUKE “ProSim 4 Vital Sign and ECG Simulator”. Dataset counted 3121 signals. Each signal included 5 seconds and 5000 measurements (5 kHz). The collection includes the following categories of signals: Normal Rhythm, Atrial Fibrillation, Brachycardia, Premature ventricular contractions (PVC), Trachycardia, Ventricular tachycardia with heart rate &gt; 160 bpm (VTach-160bpm).
DOI: 10.6084/m9.figshare.12824134
title: Supplementary Material 1 from Salinity tolerance and geographical origin predict global alien amphipod invasions global amphipod invasions

description: Underlying data considering gammarids across habitat types and geographic regions.
DOI: 10.6084/m9.figshare.12824134.v1
title: Supplementary Material 1 from Salinity tolerance and geographical origin predict global alien amphipod invasions global amphipod invasions

description: Underlying data considering gammarids across habitat types and geographic regions.
DOI: 10.6084/m9.figshare.12821852
title: Assessing spatial variability of soil organic carbon and total nitrogen in eroded hilly region of subtropical China

description: Geographic coordinates of sampling points (375) from Global Positioning System (GPS) and field survey records.
DOI: 10.6084/m9.figshare.12821852.v1
title: Assessing spatial variability of soil organic carbon and total nitrogen in eroded hilly region of subtropical China

description: Geographic coordinates of sampling points (375) from Global Positioning System (GPS) and field survey records.
DOI: 10.6084/m9.figshare.12821837.v1
title: Bad GT3X File

description: Bad file for gt3x
DOI: 10.6084/m9.figshare.12821837.v2
title: Bad GT3X File

description: Bad file for gt3x
DOI: 10.6084/m9.figshare.12821576
title: R0187_20170923a_videos

description: Rat 0187, skilled reaching data collected on 9/23/2017 in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12821510
title: Wolbachia_Lycaenids.rar

description: Nexus alignments of butterfly COI gene of Aricia agestis, A. artaxerxes and Pseudophilotes baton species complex. Nexus alignments of wsp and coxA genes of symbiotic bacteria Wolbachia from A. agestis, A. artaxerxes and P. baton species complex.<br>A. Sucháčková Bartoňová, M. Konvička, J. Marešová, M. Wiemers, N. Ignatev, N. Wahlberg, T. Schmitt, Z. Faltýnek Fric<br><br>
DOI: 10.6084/m9.figshare.12821510.v1
title: Wolbachia_Lycaenids.rar

description: Nexus alignments of butterfly COI gene of Aricia agestis, A. artaxerxes and Pseudophilotes baton species complex. Nexus alignments of wsp and coxA genes of symbiotic bacteria Wolbachia from A. agestis, A. artaxerxes and P. baton species complex.<br>A. Sucháčková Bartoňová, M. Konvička, J. Marešová, M. Wiemers, N. Ignatev, N. Wahlberg, T. Schmitt, Z. Faltýnek Fric<br><br>
DOI: 10.6084/m9.figshare.12821369
title: #MeTwo on Twitter. A collection of Twitter posts in context of a social media debate on racism in Germany

description: On July 24th, 2018 the hashtag campaign #MeTwo was started on Twitter to encourage users to share their experiences with racism in Germany. This data set contains a daily collection of the IDs (174,595 in total) of the corresponding Twitter posts using the hashtag #MeTwo, starting July 24th, 2018 till September 14th, 2018. The IDs can be used to retroactively collect the corresponding posts using the Twitter API.
DOI: 10.6084/m9.figshare.12821369.v2
title: #MeTwo on Twitter. A collection of Twitter posts in context of a social media debate on racism in Germany

description: On July 24th, 2018 the hashtag campaign #MeTwo was started on Twitter to encourage users to share their experiences with racism in Germany. This data set contains a daily collection of the IDs (174,595 in total) of the corresponding Twitter posts using the hashtag #MeTwo, starting July 24th, 2018 till September 14th, 2018. The IDs can be used to retroactively collect the corresponding posts using the Twitter API.
DOI: 10.6084/m9.figshare.12821369.v1
title: #MeTwo on Twitter. A collection of Twitter posts in context of a social media racism debate in Germany

description: On July 24th, 2018 the hashtag campaign #MeTwo was started on Twitter to encourage users to share their experiences with racism in Germany. This data set contains a daily collection of the IDs (174,595 in total) of the corresponding Twitter posts using the hashtag #MeTwo, starting July 24th, 2018 till September 14th, 2018. The IDs can be used to retroactively collect the corresponding posts using the Twitter API.
DOI: 10.17028/rd.lboro.12821255
title: Supplementary Information files for: Multiparameter flow cytometric detection and quantification of senescent cells in vitro

description: Supplementary Information files for: Multiparameter flow cytometric detection and quantification of senescent cells in vitro<br>It has been over half a century since cellular senescence was first noted and characterized, and yet no consensus senescent marker has been reliably established. This challenge is compounded by the complexity and heterogenic phenotypes of senescent cells. This necessitates the use of multiple biomarkers to confidently characterise senescent cells. Despite cytochemical staining of senescence associated-beta-galactosidase being a single marker approach, as well as being time and labour-intensive, it remains the most popular detection method. We have developed an alternative flow cytometry-based method that simultaneously quantifies multiple senescence markers at a single-cell resolution. In this study, we applied this assay to the quantification of both replicative and induced senescent primary cells. Using this assay, we were able to quantify the activity level of SA b-galactosidase, the expression level of p16INK4a and cH2AX in these cell populations. Our results show this flow cytometric approach to be sensitive, robust, and consistent in discriminating senescent cells in different cell senescence models. A strong positive correlation between these commonlyused senescence markers was demonstrated. The method described in this paper can easily be scaled up to accommodate high-throughput screening of senescent cells in applications such as therapeutic cell preparation, and in therapy-induced senescence following cancer treatment<br>
DOI: 10.17028/rd.lboro.12821255.v1
title: Supplementary Information files for: Multiparameter flow cytometric detection and quantification of senescent cells in vitro

description: Supplementary Information files for: Multiparameter flow cytometric detection and quantification of senescent cells in vitro<br>It has been over half a century since cellular senescence was first noted and characterized, and yet no consensus senescent marker has been reliably established. This challenge is compounded by the complexity and heterogenic phenotypes of senescent cells. This necessitates the use of multiple biomarkers to confidently characterise senescent cells. Despite cytochemical staining of senescence associated-beta-galactosidase being a single marker approach, as well as being time and labour-intensive, it remains the most popular detection method. We have developed an alternative flow cytometry-based method that simultaneously quantifies multiple senescence markers at a single-cell resolution. In this study, we applied this assay to the quantification of both replicative and induced senescent primary cells. Using this assay, we were able to quantify the activity level of SA b-galactosidase, the expression level of p16INK4a and cH2AX in these cell populations. Our results show this flow cytometric approach to be sensitive, robust, and consistent in discriminating senescent cells in different cell senescence models. A strong positive correlation between these commonlyused senescence markers was demonstrated. The method described in this paper can easily be scaled up to accommodate high-throughput screening of senescent cells in applications such as therapeutic cell preparation, and in therapy-induced senescence following cancer treatment<br>
DOI: 10.17028/rd.lboro.12821156
title: Supplementary Information files for: Differential responses of macroinvertebrate ionomes across experimental N:P gradients in detritus-based headwater streams

description: Supplementary Information files for: Differential responses of macroinvertebrate ionomes across experimental N:P gradients in detritus-based headwater streams <br>Diverse global change processes are reshaping the biogeochemistry of stream ecosystems. Nutrient enrichment is a common stressor that can modify flows of biologically important elements such as carbon (C), nitrogen (N), and phosphorus (P) through stream foodwebs by altering the stoichiometric composition of stream organisms. However, enrichment effects on concentrations of other important essential and trace elements in stream taxa are less understood. We investigated shifts in macroinvertebrate ionomes in response to changes in coarse benthic organic matter (CBOM) stoichiometry following N and P enrichment of five detritus-based headwater streams. Concentrations of most elements (17/19) differed among three insect genera (Maccaffertium sp., Pycnopsyche spp., and Tallaperla spp.) prior to enrichment. Genus-specific changes in the body content of: P, magnesium, and sodium (Na) in Tallaperla; P, Na, and cadmium in Pycnopsyche; and P in Maccaffertium were also found across CBOM N:P gradients. These elements increased in Tallaperla but decreased in the other two taxa due to growth dilution at larger body sizes. Multivariate elemental differences were found across all taxa, and ionome-wide shifts with dietary N and P enrichment were also observed in Tallaperla and Pycnopsyche. Our results show that macroinvertebrates exhibit distinct differences in elemental composition beyond C, N, and P and that the ionomic composition of common stream taxa can vary with body size and N and P enrichment. Thus, bottom-up changes in N and P supplies could potentially influence the cycling of lesser studied biologically essential elements in aquatic environments by altering their relative proportions in animal tissues.<br>
DOI: 10.17028/rd.lboro.12821156.v1
title: Supplementary Information files for: Differential responses of macroinvertebrate ionomes across experimental N:P gradients in detritus-based headwater streams

description: Supplementary Information files for: Differential responses of macroinvertebrate ionomes across experimental N:P gradients in detritus-based headwater streams <br>Diverse global change processes are reshaping the biogeochemistry of stream ecosystems. Nutrient enrichment is a common stressor that can modify flows of biologically important elements such as carbon (C), nitrogen (N), and phosphorus (P) through stream foodwebs by altering the stoichiometric composition of stream organisms. However, enrichment effects on concentrations of other important essential and trace elements in stream taxa are less understood. We investigated shifts in macroinvertebrate ionomes in response to changes in coarse benthic organic matter (CBOM) stoichiometry following N and P enrichment of five detritus-based headwater streams. Concentrations of most elements (17/19) differed among three insect genera (Maccaffertium sp., Pycnopsyche spp., and Tallaperla spp.) prior to enrichment. Genus-specific changes in the body content of: P, magnesium, and sodium (Na) in Tallaperla; P, Na, and cadmium in Pycnopsyche; and P in Maccaffertium were also found across CBOM N:P gradients. These elements increased in Tallaperla but decreased in the other two taxa due to growth dilution at larger body sizes. Multivariate elemental differences were found across all taxa, and ionome-wide shifts with dietary N and P enrichment were also observed in Tallaperla and Pycnopsyche. Our results show that macroinvertebrates exhibit distinct differences in elemental composition beyond C, N, and P and that the ionomic composition of common stream taxa can vary with body size and N and P enrichment. Thus, bottom-up changes in N and P supplies could potentially influence the cycling of lesser studied biologically essential elements in aquatic environments by altering their relative proportions in animal tissues.<br>
DOI: 10.17028/rd.lboro.12821093
title: Supplementary Information files for: Substrate mediated predator-prey interactions between invasive crayfish and indigenous and non-native amphipods

description: Supplementary Information files for: Substrate mediated predator-prey interactions between invasive crayfish and indigenous and non-native amphipods<br>The increasing number of taxa being translocated across the globe is leading to many nonnative species encountering indigenous taxa as well as other non-native species. Environmental heterogeneity may strongly influence the spatial distribution, habitat use and refuge availability for these taxa. Using a series of 24-h mesocosm experiments we examined the predator–prey interactions between an invasive crayfish (Pacifastacus leniusculus) and four amphipod taxa, one indigenous (Gammarus pulex) and three non-native species (Crangonyx pseudogracilis, Dikerogammarus villosus and Gammarus tigrinus) to Great Britain. The potential mediating effect of physical habitat on predator–prey interactions was examined via the use of different substrate particle sizes; cobbles, gravels and, sand. Survivorship of amphipods in response to crayfish predation varied significantly with the highest rates recorded for the non-native species D. villosus, followed by G. tigrinus, and C. pseudogracilis, with the lowest survivorship recorded for the indigenous species G. pulex for all substrates except cobble. However, total biomass consumption of the indigenous G. pulex and the nonnative D. villosus by P. leniusculus were similar suggesting that crayfish may have been satiated by larger D. villosus individuals. Substrate size had a significant influence on the predation success of P. leniusculus, with larger substrate clasts typically resulting in increased survivorship rates for all species except C. pseudogracilis, which displayed lower predation rates for sand substrates. The findings of this study highlight the risks that naı¨ve indigenous taxa may face from new invasive species and the importance of characterising physical habitat (complexity and refugia potential) when considering the potential ecological effects of invaders on predation success<br>