cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15736582
title: Genetic and phenotypic characterization of phages from the BASEL phage collection

description: We have recently composed the BASEL collection of Escherichia coli phages (BActeriophage SElection for your Laboratory), which made a relevant diversity of phages infecting the E. coli K-12 laboratory strain accessible to the community. These phages are widely used, but their assorted diversity has remained limited by the E. coli K-12 host. We have therefore now genetically overcome the two major limitations of E. coli K-12, its lack of O-antigen glycans and the presence of resident bacterial immunity. Restoring O-antigen expression resulted in the isolation of diverse additional viral groups like Kagunavirus, Nonanavirus, Gordonclarkvirinae, and Gamaleyavirus, while eliminating all known antiviral defenses of E. coli K-12 additionally enabled us to isolate phages of Wifcevirus genus. Even though some of these viral groups appear to be common in nature, no phages from any of them had previously been isolated using E. coli laboratory strains, and they had thus remained largely understudied. Overall, 37 new phage isolates have been added to complete the BASEL collection. These phages were deeply characterized genomically and phenotypically with regard to host receptors, sensitivity to antiviral defense systems, and host range. Our results highlighted dominant roles of the O-antigen barrier for viral host recognition and of restriction-modification systems in bacterial immunity.
DOI: 10.15468/dl.p8462z
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rubus fruticosus L."
 ]
}

 The dataset includes 29 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080385-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7hmv9
title: Occurrence Download

description: A dataset containing 2010 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "TaxonKey is Oxalis acetosella L."
 ]
}

 The dataset includes 2010 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080386-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hehmng
title: Occurrence Download

description: A dataset containing 3660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lupinus polyphyllus Lindl.",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3660 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080387-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29436539
title: Supplementary Material for: Circulating Proteins for Prediction of Kidney Disease Progression and Cardiovascular Outcomes: Individual Participant Data Meta-Analysis of Four Cohorts

description: Background and objectives: KIM-1, TNFRSF1A, and TNFRSF1B have been accepted as early risk markers in diabetic kidney disease by the US Food and Drug Administration. Whether they may be useful in identifying high-risk patients for cardiovascular/kidney clinical trial enrollment in other important subgroups is uncertain. 

Methods: We evaluated the potential prognostic enrichment of KIM-1, TNFRSF1A and TNFRSF1B in four cohorts: the Atherosclerosis Risk in Communities [ARIC] [N=4594, mean age 76 years, 55% women, mean eGFR 68 mL/min/1.73m2]), African American Study of Kidney Disease and Hypertension [AASK] [N=705, mean age 55 years, 39% women, mean mGFR 46 mL/min/1.73m2]), Chronic Renal Insufficiency Cohort [CRIC] [N=2943, mean age 59 years, 45% women, mean eGFR 35 mL/min/1.73m2], and Boston Kidney Biopsy Cohort [BKBC] [N=434, mean age 54 years, 48% women, mean eGFR 51 mL/min/1.73m2]. We evaluated three outcomes: 40% glomerular filtration rate (GFR) decline, kidney failure, and incident cardiovascular disease (CVD) overall and in two subgroups historically underrepresented in clinical trials: participants with no diabetes, and those with albuminuria &lt;200 mg/g.

Results: Published models (40% decline tool, kidney failure risk equation, and PREVENT) using clinical variables had moderate to strong risk discrimination in each cohort: 40% GFR decline, AUROC range: 0.78-0.90; kidney failure, C-statistic range: 0.75-0.93; and CVD, C-statistic range: 0.59-0.79. After addition of biomarkers, there was a small but significant improvement in the meta-analyzed overall population: change in AUROC in 40% GFR decline: 0.02, p&lt;0.001; change in C-statistic for kidney failure: 0.01, p=0.02; change in C-statistic for CVD: 0.01, p=0.03. Among participants without diabetes, the change was statistically significant only for 40% decline; among patient with albuminuria &lt;200 mg/g, the change was statistically significant only for the two kidney outcomes. 

Conclusions: KIM-1, TNFRSF1A, and TNFRSF1B may not be strong prognostic enrichment biomarkers over and above clinical risk estimates. Clinical trials should test whether they help with predictive enrichment.
DOI: 10.6084/m9.figshare.29436539.v1
title: Supplementary Material for: Circulating Proteins for Prediction of Kidney Disease Progression and Cardiovascular Outcomes: Individual Participant Data Meta-Analysis of Four Cohorts

description: Background and objectives: KIM-1, TNFRSF1A, and TNFRSF1B have been accepted as early risk markers in diabetic kidney disease by the US Food and Drug Administration. Whether they may be useful in identifying high-risk patients for cardiovascular/kidney clinical trial enrollment in other important subgroups is uncertain. 

Methods: We evaluated the potential prognostic enrichment of KIM-1, TNFRSF1A and TNFRSF1B in four cohorts: the Atherosclerosis Risk in Communities [ARIC] [N=4594, mean age 76 years, 55% women, mean eGFR 68 mL/min/1.73m2]), African American Study of Kidney Disease and Hypertension [AASK] [N=705, mean age 55 years, 39% women, mean mGFR 46 mL/min/1.73m2]), Chronic Renal Insufficiency Cohort [CRIC] [N=2943, mean age 59 years, 45% women, mean eGFR 35 mL/min/1.73m2], and Boston Kidney Biopsy Cohort [BKBC] [N=434, mean age 54 years, 48% women, mean eGFR 51 mL/min/1.73m2]. We evaluated three outcomes: 40% glomerular filtration rate (GFR) decline, kidney failure, and incident cardiovascular disease (CVD) overall and in two subgroups historically underrepresented in clinical trials: participants with no diabetes, and those with albuminuria &lt;200 mg/g.

Results: Published models (40% decline tool, kidney failure risk equation, and PREVENT) using clinical variables had moderate to strong risk discrimination in each cohort: 40% GFR decline, AUROC range: 0.78-0.90; kidney failure, C-statistic range: 0.75-0.93; and CVD, C-statistic range: 0.59-0.79. After addition of biomarkers, there was a small but significant improvement in the meta-analyzed overall population: change in AUROC in 40% GFR decline: 0.02, p&lt;0.001; change in C-statistic for kidney failure: 0.01, p=0.02; change in C-statistic for CVD: 0.01, p=0.03. Among participants without diabetes, the change was statistically significant only for 40% decline; among patient with albuminuria &lt;200 mg/g, the change was statistically significant only for the two kidney outcomes. 

Conclusions: KIM-1, TNFRSF1A, and TNFRSF1B may not be strong prognostic enrichment biomarkers over and above clinical risk estimates. Clinical trials should test whether they help with predictive enrichment.
DOI: 10.6084/m9.figshare.29436515
title: Research data

description: In this study, we compared the role of local enhancement in the foraging behaviour of the Aegean wall lizard (Podarcis erhardii) from populations inhabiting small islets (&lt; 1km2), larger islands, and mainland habitats. In the field, we offered lizards food and noted whether and how fast individuals would approach the food item and start eating. We compared the lizards’ foraging decisions across populations and between social situations (with and without conspecifics present). In addition, we looked at the occurrence and level of interference competition. We hypothesized that insular lizards, typically living under low predation, high density, and high food variability, will exhibit stronger local enhancement behaviour, but engage more in aggressive interactions than their mainland conspecifics due to the more intense intraspecific competition.
DOI: 10.6084/m9.figshare.29436515.v1
title: Research data

description: In this study, we compared the role of local enhancement in the foraging behaviour of the Aegean wall lizard (Podarcis erhardii) from populations inhabiting small islets (&lt; 1km2), larger islands, and mainland habitats. In the field, we offered lizards food and noted whether and how fast individuals would approach the food item and start eating. We compared the lizards’ foraging decisions across populations and between social situations (with and without conspecifics present). In addition, we looked at the occurrence and level of interference competition. We hypothesized that insular lizards, typically living under low predation, high density, and high food variability, will exhibit stronger local enhancement behaviour, but engage more in aggressive interactions than their mainland conspecifics due to the more intense intraspecific competition.
DOI: 10.15468/dl.dzmykd
title: Occurrence Download

description: A dataset containing 2336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulva australis Aresch.",
 "Year 2000-2025"
 ]
}

 The dataset includes 2336 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080391-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6q25mn
title: Occurrence Download

description: A dataset containing 9841 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Citrus australis (A.Cunn. ex Mudie) Planch., Citrus undulata Guillaumin, Citrus hystrix DC., Citrus warburgina F.M.Bailey, Citrus oxanthera Beauvis., Citrus latipes (Swingle) Yu.Tanaka, Citrus glauca (Lindl.) Burkill, Citrus inodora F.M.Bailey, Citrus australasica F.Muell., Citrus cavaleriei H.Lév. ex Cavalerie, Citrus maxima (Burm.) Merr., Citrus medica L., Citrus swinglei Burkill ex Harms, Citrus indica Yu.Tanaka, Citrus gracilis Mabb., Citrus oxanthera Beauvis., Citrus ×assamensis R.M.Dutta & Bhattacharya, Citrus japonica Thunb., Citrus trifoliata L., Citrus halimii B.C.Stone)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9841 records from 377 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080390-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14795396
title: Data and analysis code in supplement to M. Adam et al. "Land conversions not climate effects are the dominant indirect consequence of sun-driven CO2 capture, conversion, and sequestration" (2025) published in Environmental Research Letters

description: A newer version of this record (v1.0) is available here: doi.org/10.5281/zenodo.14803902

This repository holds the code and data required to reproduce the main figures and statistics of the manuscript:

M. Adam, T. Kleinen, M. May, and K. Rehfeld, “Land conversions not climate effects are the dominant indirect consequence of sun-driven CO2 capture, conversion, and sequestration,” Environmental Research Letters 20 034011 (2025), DOI: 10.1088/1748-9326/ada971.

If you are re-using (parts of) this code stack or the data contained within, please cite the above publication. You are free to additionally cite this repository as

M. Adam, T. Kleinen, M. May, and K. Rehfeld, “Data and analysis code in supplement to `Land conversions not climate effects are the dominant indirect consequence of sun-driven CO2 capture, conversion, and sequestration (2025)´”, DOI: 10.5281/zenodo.14795395.

Please refer to the README.md file for contents and setup instructions.
DOI: 10.15468/dl.e93af3
title: Occurrence Download

description: A dataset containing 535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is one of (CHN.31_1, CHN.15_1, CHN.24_1, CHN.1_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Butastur indicus (Gmelin, 1788)"
 ]
}

 The dataset includes 535 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080396-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.634vaa
title: Occurrence Download

description: A dataset containing 1060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lupinus polyphyllus Lindl.",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1060 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080393-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh4xh6
title: Occurrence Download

description: A dataset containing 938 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.18688 57.02928,-4.17593 57.02928,-4.17593 57.03686,-4.18688 57.03686,-4.18688 57.02928))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 938 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080392-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g7kdd
title: Occurrence Download

description: A dataset containing 129964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aptenodytes forsteri G.R.Gray, 1844",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 129964 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080374-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c5jfw
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "Month is one of (May, June, July, August, September, October)",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "Year 2000-2025"
 ]
}

 The dataset includes 154 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080395-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.za9mkz
title: Occurrence Download

description: A dataset containing 191172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aptenodytes patagonicus J.F.Miller, 1778",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 10",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1950",
 "Year is less than or equal to 2014"
 ]
}

 The dataset includes 191172 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080363-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2sqwxg
title: Occurrence Download

description: A dataset containing 97 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND (occurrence.taxonkey = 3755232 OR occurrence.acceptedtaxonkey = 3755232 OR occurrence.kingdomkey = 3755232 OR occurrence.phylumkey = 3755232 OR occurrence.classkey = 3755232 OR occurrence.orderkey = 3755232 OR occurrence.familykey = 3755232 OR occurrence.genuskey = 3755232 OR occurrence.specieskey = 3755232)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 97 records were derived from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080376-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p3g4bp
title: Occurrence Download

description: A dataset containing 384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.57061 55.14487,-4.56447 55.14487,-4.56447 55.14846,-4.57061 55.14846,-4.57061 55.14487))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 384 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080398-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28625297
title: Tongue flick data

description: We compared the discriminatory abilities for self and conspecific chemical recognition of mainland and island Italian wall lizards (<i>Podarcis siculus</i>), a species much dependent on chemoreception. We sampled lizards from three locations on the Italian mainland and three Adriatic islands and assessed their tongue flick behaviour when confronted with water (control), their own odour, or that of conspecifics. We followed a habituation-dishabituation protocol during which each lizard was first presented with the same cotton swab permeated with the same stimuli for three consecutive trials followed by a fourth ‘dishabituation’ trial in which lizards were presented with a new cotton swab and a treatment stimulus. We exposed individuals to three different habituation-dishabituation treatments: self odour vs conspecific odour, a conspecific’s odour vs another conspecific’s odour, and blank control vs another blank control. Odours were extracted by rubbing cotton swabs damped with distilled water on the cloacal area and femoral pores of the donor lizards. For the blank control treatment, we used a clean cotton swab that was dipped in distilled water and did not contain any chemical cues. Each trial lasted 60 seconds during which we counted how many times lizards flicked their tongue towards the cotton swab.
DOI: 10.6084/m9.figshare.28625297.v1
title: Tongue flick data

description: We compared the discriminatory abilities for self and conspecific chemical recognition of mainland and island Italian wall lizards (<i>Podarcis siculus</i>), a species much dependent on chemoreception. We sampled lizards from three locations on the Italian mainland and three Adriatic islands and assessed their tongue flick behaviour when confronted with water (control), their own odour, or that of conspecifics. We followed a habituation-dishabituation protocol during which each lizard was first presented with the same cotton swab permeated with the same stimuli for three consecutive trials followed by a fourth ‘dishabituation’ trial in which lizards were presented with a new cotton swab and a treatment stimulus. We exposed individuals to three different habituation-dishabituation treatments: self odour vs conspecific odour, a conspecific’s odour vs another conspecific’s odour, and blank control vs another blank control. Odours were extracted by rubbing cotton swabs damped with distilled water on the cloacal area and femoral pores of the donor lizards. For the blank control treatment, we used a clean cotton swab that was dipped in distilled water and did not contain any chemical cues. Each trial lasted 60 seconds during which we counted how many times lizards flicked their tongue towards the cotton swab.
DOI: 10.15468/dl.em92d9
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Regroupement d'études et inventaires-Regroupement de données d'espèces exotiques"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080402-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15772865
title: Analyzing the Influence of Task-Technology Fit on User Intentions to Adopt Digital Payment Systems in Indonesia
DOI: 10.5281/zenodo.15772866
title: Analyzing the Influence of Task-Technology Fit on User Intentions to Adopt Digital Payment Systems in Indonesia
DOI: 10.15468/dl.ag5j75
title: Occurrence Download

description: A dataset containing 791 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rosa canina L."
 ]
}

 The dataset includes 791 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080401-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsu3aa
title: Occurrence Download

description: A dataset containing 2709 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Prunus spinosa L."
 ]
}

 The dataset includes 2709 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080400-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.