cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ymcj8xvp7n
title: Air sampling methodology for determination of methane concentration on the periphery and in buoys in a shallow lake

description: Data shows the temporal variation in atmospheric methane (CH4) concentrations over two consecutive periods of about 15 days each in seasonal fieldworks during four years (April 2011 - March 2015) in a shallow lake, “La Barrancosa”. Also, contain wind speed and direction data for the total study period provided by the National Weather Service (SMN), Weather Station of Benito Juárez. Four sampling stations were located in the lake: two on buoys near the center of the lake and two located at the west – south-southwest of the lake (peripherals). Time-integrated air samples were collected by vacuum vessels equipped with air intake restrictors (IR) (Gere and Gratton 2010). The different technical issues that must be considered for the validation of the sampling methodology are detailed (analysis of the tightness of the vessels and good operation of the shutoff valve and assembly and calibration of the IR). The air samples were analyzed for CH4 concentration by gas chromatography (CG Agilent 7890A). Linear regressions for AM in the air samples from the periphery (AMP) and in those collected within the lake (AMB) were performed using Origin Lab 6.0 software. Pearson correlation analyses (R) to examine the representativeness of AMP regarding CH4 diffusive fluxes at the water - air interface (Fusé et al., 2016) and year-to-year differences of the means of AM (ANOVA, Fisher’s LSD Test) were performed using Infostat Statistical Software. The wind rose was elaborated with WRPLOT View 7.0.0. The results highlight the use of a simple and low-cost methodology to estimate the behavior of CH4 emissions from a shallow lake by measuring peripherals atmospheric CH4 concentrations, which could be easily extrapolated to the simultaneous study of several lakes.
DOI: 10.25378/janelia.8869115
title: Recruitment of GABAergic Interneurons in the Barrel Cortex during Active Tactile Behavior

description: Cell type-specific recordings from fast-spiking (PV expressing), Sst, VIP neurons in the barrel cortex during active tactile behavior<br>Neural computation involves diverse types of GABAergic inhibitory interneurons that are integrated with excitatory (E) neurons into precisely structured circuits. To understand how each neuron type shapes sensory representations, we measured firing patterns of defined types of neurons in the barrel cortex while mice performed an active, whisker-dependent object localization task. Touch excited fast-spiking (FS) interneurons at short latency, followed by activation of E neurons and somatostatin-expressing (SST) interneurons. Touch only weakly modulated vasoactive intestinal polypeptide-expressing (VIP) interneurons. Voluntary whisker movement activated FS neurons in the ventral posteromedial nucleus (VPM) target layers, a subset of SST neurons and a majority of VIP neurons. Together, FS neurons track thalamic input, mediating feedforward inhibition. SST neurons monitor local excitation, providing feedback inhibition. VIP neurons are activated by non-sensory inputs, disinhibiting E and FS neurons. Our data reveal rules of recruitment for interneuron types during behavior, providing foundations for understanding computation in cortical microcircuits.<br>
DOI: 10.26180/25137497.v2
title: Data for McGovern et al, 2024: Finding and Following: A deep learning-based pipeline for tracking platelets during thrombus formation in vivo and ex vivo

description: Data for McGovern et al, 2024: Finding and Following: A deep learning-based pipeline for tracking platelets during thrombus formation in vivo and ex vivoIn these directories you will find example data to run the software described in the paper:segmentationtraining_data: example frames (training_data/training_images) and corresponding ground truth segmentations (training_data/training_gt) that can be used to train the U-net described in the paper.{exvivo,invivo}_example: example images with multiple matching corresponding manual segmentations that can be used to validate the U-net's performance.tracking image datasets that can be segmented with the U-net trained from the segmentation data, then tracked and analysed.The data format is OME-NGFF v0.4, an emerging open format for bioimaging data and metadata. It can therefore be opened with open software in various ecosystems<sup>[1]</sup>. To open the files in napari, install the napari-ome-zarr plugin and then (for example):<pre><pre>napari --plugin napari-ome-zarr tracking/mouse_invivo/200527_IVMTR73_Inj4_saline_exp3.ome.zarr<br></pre></pre>Note, however, that due to a current implementation issue with napari-ome-zarr, the opened segmentation files will not be manually editable with napari. For the moment, use the data loading widget from iterseg if you want to paint into the segmentation data.<br>https://ngff.openmicroscopy.org/tools/ ↩︎
DOI: 10.17632/ggzr68kmrt
title: Reliability and validity of DTI-based indirect disconnection measures

description: Data accompanying the paper: Reliability and validity of DTI-based indirect disconnection measures.
Authors: A.R. Smits, M.J.E. van Zandvoort, N.F. Ramsey, E.H.F. de Haan, M. Raemaekers

Abstract
White matter connections enable the interaction within and between brain networks. Brain lesions can cause structural disconnections that disrupt networks and thereby cognitive functions supported by them. In recent years, novel methods have been developed to quantify the extent of structural disconnection after focal lesions, using tractography data from healthy controls. These methods, however, are indirect and their reliability and validity have yet to be fully established. In this study, we present our implementation of this approach, in a toolkit supplemented by uncertainty metrics for the predictions overall and at voxel-level. These metrics give an indication of the reliability and are used to compare predictions with direct measures from patients’ diffusion tensor imaging (DTI) data in a sample of 95 first-ever stroke patients. Results show that, except for small lesions, our toolkit can predict fiber loss with high reliability and compares well to direct patient DTI estimates. Clinical utility of the method was demonstrated using lesion data from a subset of patients suffering from hemianopia. Both tract-based measures outperformed lesion localization in mapping visual field defects and showed a network consistent with the known anatomy of the visual system. This study offers an important contribution to the validation of structural disconnection mapping. We show that indirect measures of structural disconnection can be a reliable and valid substitute for direct estimations of fiber loss after focal lesions. Moreover, based on these results, we argue that indirect structural disconnection measures may even be preferable to lower-quality single subject diffusion MRI when based on high-quality healthy control datasets.

Files/Folders: 
(1) Lesion overlap map
(2) SnPM lesion-symptom maps: contains the thresholded p-value maps for the SnPM analysis for visual field defects, based on predictions of the 3 databases, the lesion maps, and the visitation-map based on the patient’s DTI as input.
(3) Toolkit code
DOI: 10.17632/tnf32rc7zw
title: Fish identification data based on MSI

description: This data corresponds to the article: Deep machine learning identified fish meat using multispectral imaging.
DOI: 10.6084/m9.figshare.14912262.v1
title: USAF_speckle_bin4.hdf5

description: example Data for ptyLab
DOI: 10.6084/m9.figshare.18863897.v2
title: Data for Defining and Assessing the Value of Canonical Mixed Methods Research Designs in Public Policy and Public Administration

description: This is the literature review data accompany the manuscript titled "Defining and Assessing the Value of Canonical Mixed Methods Research Designs in Public Policy and Public Administration" (forthcoming JPAM).
DOI: 10.17632/m2dzcdgdbg
title: Integrity of financial information and firms’ access to energy in developing countries - code

description: Enterprise surveys - Stata code
DOI: 10.17632/nmcc7wrysd
title: Czech Adaptation of PAQ-C

description: The data were used to determine the psychometric properties of the Czech version of the PAQ-C questionnaire. The dataset contains 36 variables. Data were obtained from Czech children in the fifth and sixth grades of primary schools. The variables consist of demographic data (3), the PAQ-C score (26) and five variables related to accelerometry. Data were obtained in December 2019 and January 2020.
DOI: 10.6084/m9.figshare.25959403.v3
title: <i>Vibration Sensor Dataset for Estimating Fan Coil Motor Health</i>

description: <i>To enhance the field of continuous motor health monitoring, we present FAN-COIL-I, an extensive vibration sensor dataset derived from a Fan Coil motor. This dataset is uniquely positioned to facilitate the detection and prediction of motor health issues, enabling a more efficient maintenance scheduling process that can potentially obviate the need for regular checks. Unlike existing datasets, often created under controlled conditions or through simulations, FAN-COIL-I is compiled from real-world operational data, providing an invaluable resource for authentic motor diagnosis and predictive maintenance research. Gathered using a high-resolution 32KHz sampling rate, the dataset encompasses comprehensive vibration readings from both the forward and rear sides of the Fan Coil motor over a continuous two-week period, offering a rare glimpse into the dynamic operational patterns of these systems in a corporate setting. FAN-COIL-I stands out not only for its real-world applicability but also for its potential to serve as a reliable benchmark for researchers and practitioners seeking to validate their models against genuine engine conditions.</i>
DOI: 10.17632/w7h6sjpy9d
title: Data for: Safety assessment in megaprojects using artificial intelligence
DOI: 10.17632/6c4d2fsyh2
title: Accretion of the anomalous CR2 chondrite Northwest Africa 14674

description: Electron microprobe and TEM analyses of phases in this meteorite.
DOI: 10.17632/7b9zmgrhvh
title: Ferrandon et al., 2024

description: The aim of this study is to determine the cytotoxic effect of a colonic microbial metabolite named PAA on colorectal cancer. The data generated bellow using western blot show the impact of two different concentrations of PAA for 24h of contact on HCT116 and RKO cancer cell lines. The probed proteins are involved in survival pathways activation, proliferation, cell cycle and apoptosis. These results are compiled together in an original figure labeled for future publication.
DOI: 10.17632/nrs79ny97s
title: Green Bonds Dataset

description: .
DOI: 10.17632/xhxvzdvtgx
title: Archived CTD profiles from World Ocean Datasets (WOD) of CTD with vertical resolution greater than 1 m

description: Selected World Ocean Datasets of the CTD profiles with vertical resolution greater than 1 meter.
DOI: 10.17632/y5g4vs372n
title: The Impact of Sarcopenia, Nutritional Status, and Physical Function on Quality of Life in Elderly Cancer Patients: A Path Analysis

description: The datasets generated and/or analyzed during the current study are available from the corresponding author upon reasonable request. Due to privacy and ethical considerations, data containing personally identifiable information cannot be made publicly available. However, aggregated data or de-identified datasets may be provided upon request to support reproducibility and future research.
DOI: 10.6084/m9.figshare.12059046.v2
title: Table S1: GDGT compositions across all experiment conditions and sampling times

description: Table S1 Notes. GDGT relative abundances are given as percent of total GDGT quantified. In the O<sub>2</sub> column, “Air” describes experiments without gas sparge, and 0.2* is describes the serially transferred 0.2% O<sub>2</sub> gas-fed batch experiment. ES and LL in the Phase column describe Early Stationary and Late Log phase sampling respectively.<br>
DOI: 10.6084/m9.figshare.5697580.v1
title: 200 synthetic rainfall events.xlsx

description: These are 200 synthetic rainfall events generated by rainfall intensity formula.
DOI: 10.17632/c2925mpjpp
title: Transcripts for: Airline brand choice in a duopolistic market: The case of New Zealand

description: This document provides the transcripts for 209 interviews with air travellers that took place between September 2017 and January 2018 in Palmerston North and Wellington, New Zealand. The transcripts are used in our study: Airline brand choice in a duopolistic market: The case of New Zealand. You can find the questions used and our analysis published in this article.
DOI: 10.17632/s33r57h5zm
title: (Dataset) Web accessibility of the e-commerce website

description: Evaluation of the accessibility of e-commerce sites
DOI: 10.17632/zxh697pnnm
title: Datasets on the study of thermodynamic and hygroscopic behaviors of two dense African tropical woods, Erythrophleum sauveolens and Nauclea diderrichii

description: The datasets presented in this study include the relative humidities and moisture contents subjected to hygrometric conditions, and extract contents of two dense African tropical woods obtained through extraction in solvents. In this work, the thermodynamic behaviour of these species during desorption and the effect of extraction on the hygroscopic behaviour were evaluated. In this study, the role of the anatomical structures on the thermodynamic properties and desorption isotherms and the effect of wood extractives on the moisture sorption behaviour were verified. Anatomical structures such as porosity, parenchyma, rays and vessels could influence the hygroscopic behaviour of the species studied. Wood treated with solvents and native wood were subjected to sorption experiments. The data in Table 1 shows the experimental relative humidities values obtained using the static gravimetric method during desorption at seven equilibrium moisture contents, which were recorded during data collection. These values, which are greater for Bilinga than Tali, increase with temperature and equilibrium moisture content. The anatomical structures of Bilinga than Tali could indicate its ability to accommodate more water molecules than Tali and the presence of more vapour in the environment at higher temperatures. These data can also explain the energy requirements during drying, which are related to their. The data in table 2 describes the equilibrium moisture contents values obtained during moisture desorption at three temperatures and six relative humidities. These values increase with relative humidity and decrease with increase in temperature. From the data, Tali is less hygroscopic than Bilinga. The anatomical structures of these wood species could influence this behaviour. The data in table 3 describes masses of extract, which were measured after filtration and concentration. The extracts macerated from wood powder, are the highest with acetone followed by methanol, ethanol, hot water, ethanol-toluene and toluene were higher in Tali than Bilinga. The presence of more extracts in a species can explain its hydrophobic and hydrophilic tendencies towards water molecules. Data for equilibrium moisture contents of the species studied obtained using the static gravimetric method, at relative humidities between 5.3 and 97% at temperatures from 30 to 70oC during adsorption and desorption are presented in table 4. The data collected by weighing samples at thermodynamic equilibrium, show that the equilibrium moisture contents values in sets of nine samples increase with increase in relative humidity and decrease with increase in temperature. These data can be presented as moisture sorption isotherms to also describe the behaviour of woods with similar anatomical and chemical properties in similar climatic conditions and can also indicate the appropriate moisture contents applicable in different environments of application.
DOI: 10.6084/m9.figshare.22102010.v1
title: forbes2000-2022.csv

description: Dataset to be downloaded and analyzed by MBA-UNAM Students
DOI: 10.17632/k59v85zjr5
title: Low-cost and open-source neonatal incubator operated by an Arduino microcontroller

description: An unacceptably large number of newborn infants die in developing countries. For a considerable number of cases (particularly in preterm infants), morbidity and mortality can be reduced by simply maintaining newborn thermal homeostasis during the first weeks of life. Unfortunately, deaths caused by prematurity remain inordinately common in low- and middle-income countries (LMICs) due to reduced access to incubators in light of the high cost of commercially available devices.  We herein describe and test a low-cost and easy-to-assemble neonatal incubator created with inexpensive materials readily available in LMICs. The incubator is based on an Arduino microcontroller. It maintains controlled temperature and relative humidity inside the main chamber while continuously measuring newborn weight progress. Moreover, the incubator has a tilting bed system and an additional independent safety temperature alarm. The performance of the novel low-cost neonatal incubator was evaluated and successfully passed the IEC 60601-2-19 standards.  In the present work, we provide all the necessary technical information, which is distributed as open source. This will enable assembly  of very low-cost (<250 €) and fully functional incubators in LMICs that should help reduce neonatal mortality. 

In this dataset there are available: stl files for 3D printing fabrication; blueprint for wood structures; PCB layout;  Arduino code; Fabrication instructions.
DOI: 10.6084/m9.figshare.29180783.v3
title: HMAP Data File Frenchman's Bay, USA fisheries - In Process

description: Gulf of Maine fisheries data file showing vessel details, cod catches, landing ports and fishing efforts from 1860 to 1865.
DOI: 10.17632/28r5f3vmrp
title: Bangladeshi Venomous Snakes Image Dataset

description: The dataset of venomous Bangladeshi snakes, comprising images of Russell's Viper, King Cobra, and Common Krait, offers a valuable resource for developing an image processing-based deep learning algorithm. This algorithm can aid in the rapid identification of these snakes, enhancing both ecological preservation and public safety. The comprehensive methods and protocols described ensure that the data collection and processing are rigorous, enabling others to reproduce and build upon this research effectively.
DOI: 10.17632/7y7vshk665
title: Research Data for Paper: Fiber Deviation and Optimized Toolpath Strategies in Melt Electrowriting of Tubular Scaffolds

description: This dataset contains stitched microscope image data of tubular scaffolds printed using melt-electrowriting (MEW). The images were used in the paper "Fiber Deviation and Optimized Toolpath Strategies in Melt Electrowriting of Tubular Scaffolds" by Neuhaus et al. to determine the deviation of the printed fiber from the programmed toolpath. Additionally, the G-code programs and the CNC encoder data from the printing process are included for reference.
DOI: 10.17632/dz5mf6w43t
title: Understanding Recreational Fishers' Motivations in Wetland Tourism Destinations: The Push and Pull Theory Approach

description: This data set aimed at developing a measurement instrument to determine and examine recreational fishing tourists' motivations at wetland destinations by utilizing the push and pull motivation framework.
DOI: 10.17632/yjrn9c2pvy
title: Data for: Texture diversity in melon (Cucumis melo L.): Sensory and physical assessments

description: Raw data on melon quality
DOI: 10.6084/m9.figshare.20060948.v1
title: Shelby County Data

description: Shelby County TN, Interdependent infrastracture network. In this project only Water and Power network have been used.
DOI: 10.6084/m9.figshare.22691590.v1
title: Figure 1- skin thickness

description: File containing data pertaining to figure 1 in the article. Data related to overall epidermal and stratum corneum thickness obtained from H&E stained rat thick and thin skin.
DOI: 10.17632/2xwjzjzvyn
title: Dual mapping of RNA-seq samples from blood of visceral leishmaniasis patients.

description: This dataset contains read count output files from STAR aligner using combined reference genome for dual RNA-seq mapping strategy. Raw fastq files (E-MTAB-11047) were trimmed and used for mapping to a concatenated host/parasite genome (Homo sapiens GRCh38.p13 and Leishmania infantum GCA_900500625.1 available at ENSEMBL). Group of samples: asymptomatic (A*.tab files), diseased patients with active infection before the treatment (P*D0*.tab files) and cured visceral leishmaniasis patients (P*D180*.tab files). More details of the RNA-seq experiment and data analysis can be found in related links.
DOI: 10.17632/m5h9gz6t5m
title: A Dataset of Fresh and Disease Leaves

description: This comprehensive dataset comprises a diverse collection of fresh and diseased leaves, encompassing 19 distinct classes derived from 5 types of leaves. The dataset includes both authentic samples and synthetically generated data to enhance its breadth and utility.

Key Features:

Fresh Leaves: Authentic samples representing the healthy state of each leaf type.
Diseased Leaves: Real-world instances showcasing various types of leaf diseases across different plant species.
Synthetic Generation: Augmented data generated using generative adversarial networks (GANs) to expand the dataset's size and diversity.
Class Diversity: Encompasses 19 distinct classes derived from 5 different types of leaves, providing a rich variety for classification tasks.
Annotated Labels: Each sample is meticulously annotated with its corresponding class label, facilitating supervised learning tasks.

This dataset serves as a valuable resource for researchers, educators, and practitioners engaged in machine learning, computer vision, and agricultural studies, enabling the development and evaluation of algorithms for leaf classification, disease detection, and image synthesis.
DOI: 10.6084/m9.figshare.25217828.v1
title: Maternal care under large clutches with small eggs: The evolution of life history traits in shield bugs

description: We examined evolutionary associations between parental care and other life-history traits, female body size, egg size, clutch size, reproductive output and developmental period of eggs and hatchlings, in shield bugs using phylogenetic generalized least squares (PGLS) models in the phylolm package for R.Then, the pattern of evolutionary transitions among character states, parental care and egg size, clutch size or reproductive output, was examined using the Discrete dependent model implemented in BayesTraits.Our analyses revealed that female body size affected reproductive resource allocation. Contrary to the expectations of current theories, the acquisition of maternal care was associated with small eggs, large clutches, and large egg-resource allocation.There was a greater trade-off between egg size and clutch size in caring species than in non-caring species.Egg and hatchling developmental rates were not correlated with egg size, but were slower in caring species than in non-caring species.Analyses of evolutionary transitions suggest that the establishment of large clutches, small eggs and large egg-resource allocation preceded the evolution of maternal care.
DOI: 10.6084/m9.figshare.26384020.v2
title: sumo traffic simulation.rar

description: This project involves simulating urban traffic using SUMO across various urban layouts to analyze the correlation between urban form, traffic patterns, and pollution levels.
DOI: 10.17632/28x2zwvj9n
title: HDHT_TEST_PART4

description: This is a 4K head talking dataset for digital people training.