cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17454198
title: CPRCSdb: A comprehensive phenotype-associated single-cell transcriptome database for human cancer

description: Single-cell RNA sequencing has revolutionized the high-resolution characterization of cellular heterogeneity within the tumor microenvironment. It is now widely recognized that cell heterogeneity plays a major role in determining variations in key clinical phenotypes, including patient survival, tumor size, lymph node involvement, metastasis, and responses to anticancer therapies. However, a critical gap remains in the lack of comprehensive databases that systematically link single-cell data to these clinically relevant phenotypes. To address this, we developed CPRCSdb (http://www.yzbio.top/CPRCSdb/), a comprehensive database that integrates clinical phenotypes with single-cell transcriptomic heterogeneity. CPRCSdb includes over 4.05 million cells from 1,053 manually curated single-cell samples and 101 integrated datasets, along with 11,032 bulk RNA-seq samples, covering 29 cancer types. These bulk samples span 5 disease phenotype categories and the therapy response phenotypes of 30 different drugs. We analyzed 6,197 associations between bulk-level phenotypes and single-cell heterogeneity, identifying over 1.13 million clinically relevant cells. Rigorous quality control measures were applied to ensure data accuracy. For each association, CPRCSdb supports downstream analyses, including differential expression, functional enrichment, and cell–cell communication inference. We anticipate that CPRCSdb will serve as a valuable and integrative resource for investigating the mechanisms underlying tumorigenesis and cancer progression.
DOI: 10.5281/zenodo.17454197
title: CPRCSdb: A comprehensive phenotype-associated single-cell transcriptome database for human cancer

description: Single-cell RNA sequencing has revolutionized the high-resolution characterization of cellular heterogeneity within the tumor microenvironment. It is now widely recognized that cell heterogeneity plays a major role in determining variations in key clinical phenotypes, including patient survival, tumor size, lymph node involvement, metastasis, and responses to anticancer therapies. However, a critical gap remains in the lack of comprehensive databases that systematically link single-cell data to these clinically relevant phenotypes. To address this, we developed CPRCSdb (http://www.yzbio.top/CPRCSdb/), a comprehensive database that integrates clinical phenotypes with single-cell transcriptomic heterogeneity. CPRCSdb includes over 4.05 million cells from 1,053 manually curated single-cell samples and 101 integrated datasets, along with 11,032 bulk RNA-seq samples, covering 29 cancer types. These bulk samples span 5 disease phenotype categories and the therapy response phenotypes of 30 different drugs. We analyzed 6,197 associations between bulk-level phenotypes and single-cell heterogeneity, identifying over 1.13 million clinically relevant cells. Rigorous quality control measures were applied to ensure data accuracy. For each association, CPRCSdb supports downstream analyses, including differential expression, functional enrichment, and cell–cell communication inference. We anticipate that CPRCSdb will serve as a valuable and integrative resource for investigating the mechanisms underlying tumorigenesis and cancer progression.
DOI: 10.57745/1pn9ss
title: Entretien avec Feliks Kaspiravičius. Histoire de vie et expériences de déportation en URSS

description: Cet entretien a eu lieu le 27 août 2009 à Bratsk (région d'Irkoutsk), Russie. Il a été mené par Emilia Koustova et Larissa Salakhova, avec la participation de Alain Blum qui s'occupait de l'enregistrement. L'entretien a été réalisé en russe. Il a duré 1 heure et 44 minutes.
DOI: 10.5066/p1cj29ag
title: Argentine black and white tegu (Salvator merianae) morphometrics and gastrointestinal contents, Florida, 2016-2021

description: The dataset contains the gastrointestinal contents of 275 Argentine black and white tegus (Salvator merianae) collected between 2016 and 2021 from two geographically isolated populations in Florida: one in Miami-Dade County, established around 2011, and another in Charlotte County, established in 2018. Dietary analysis revealed a broad spectrum of consumed items, including vertebrates, invertebrates, and plant matter. These items spanned 12 taxonomic classes, 63 orders, and 126 families, representing a diverse assemblage of native, invasive, and agriculturally important species.

In addition to dietary data, comprehensive morphometric measurements were recorded for each individual, including sex, body mass (g), snout-vent length (cm), tail length (cm), tail condition (intact or regenerated), total length (cm), fat mass (g), and derived variables calculated from these metrics.

Data are organized across three linked CSV files, each connected by a unique tegu identifier: 1) tegu_diet_individuals – individual-level morphometric and metadata; 2) tegu_diet_dietcategories – categorized dietary items per individual; and 3) tegu_diet_MEM spatial and ecological metrics derived from Moran’s Eigenvector Maps.
DOI: 10.15468/dl.zxsjmg
title: Occurrence Download

description: A dataset containing 42379 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is South America",
 "Country is one of (Colombia, Ecuador, Peru)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lesbia victoriae"
 ]
}

 The dataset includes 42379 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031352-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6p5kru
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stenamma stictosomum"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031355-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjxx9d
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , Phoebe crassipedicella, , , )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 52 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031356-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29480798
title: High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by RT-DC

description: This dataset supports the publication <i>“High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by Real-Time Deformability Cytometry”</i>. [1]It includes simulation results, RT-DC measurements of DOPC and SM/Chol vesicles, and a Jupyter notebook implementing three model-based fitting strategies (direct, collective, and combined) to extract the surface dilational modulus <i>K</i> from experimental data.The simulation results are based on a phase-field model capturing the deformation–area relationship of fluid lipid vesicles. Experimental data are provided as <code>.tsv</code> and <code>.rtdc</code> files, including datasets at multiple flow rates.The notebook reproduces the main results of the associated publication and enables application of the method to new datasets. See the included README for details.<b>References</b>[1] Kloppe, M., Maurer, S. J., Abele, T., Göpfrich, K., & Aland, S. (2025). <i>High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by Real-Time Deformability Cytometry</i>. Submitted to <i>Soft Matter</i>.[2] Otto, O., et al. (2015). <i>Real-time deformability cytometry: on-the-fly cell mechanical phenotyping</i>. Nature Methods, 12(3), 199–202. https://doi.org/10.1038/nmeth.3281[3] https://github.com/ZELLMECHANIK-DRESDEN/dclab[4] https://dclab.readthedocs.io<br>
DOI: 10.6084/m9.figshare.29480798.v2
title: High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by RT-DC

description: This dataset supports the publication <i>“High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by Real-Time Deformability Cytometry”</i>. [1]It includes simulation results, RT-DC measurements of DOPC and SM/Chol vesicles, and a Jupyter notebook implementing three model-based fitting strategies (direct, collective, and combined) to extract the surface dilational modulus <i>K</i> from experimental data.The simulation results are based on a phase-field model capturing the deformation–area relationship of fluid lipid vesicles. Experimental data are provided as <code>.tsv</code> and <code>.rtdc</code> files, including datasets at multiple flow rates.The notebook reproduces the main results of the associated publication and enables application of the method to new datasets. See the included README for details.<b>References</b>[1] Kloppe, M., Maurer, S. J., Abele, T., Göpfrich, K., & Aland, S. (2025). <i>High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by Real-Time Deformability Cytometry</i>. Submitted to <i>Soft Matter</i>.[2] Otto, O., et al. (2015). <i>Real-time deformability cytometry: on-the-fly cell mechanical phenotyping</i>. Nature Methods, 12(3), 199–202. https://doi.org/10.1038/nmeth.3281[3] https://github.com/ZELLMECHANIK-DRESDEN/dclab[4] https://dclab.readthedocs.io<br>
DOI: 10.6084/m9.figshare.29480798.v1
title: High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by RT-DC

description: This dataset supports the publication <i>“High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by Real-Time Deformability Cytometry”</i>. [1]It includes simulation results, RT-DC measurements of DOPC and SM/Chol vesicles, and a Jupyter notebook implementing three model-based fitting strategies (direct, collective, and combined) to extract the surface dilational modulus <i>K</i> from experimental data.The simulation results are based on a phase-field model capturing the deformation–area relationship of fluid lipid vesicles. Experimental data are provided as <code>.tsv</code> and <code>.rtdc</code> files, including datasets at multiple flow rates.The notebook reproduces the main results of the associated publication and enables application of the method to new datasets. See the included README for details.<b>References</b>[1] Kloppe, M., Maurer, S. J., Abele, T., Göpfrich, K., & Aland, S. (2025). <i>High-Throughput Mechanical Characterization of Giant Unilamellar Vesicles by Real-Time Deformability Cytometry</i>. Submitted to <i>Soft Matter</i>.[2] Otto, O., et al. (2015). <i>Real-time deformability cytometry: on-the-fly cell mechanical phenotyping</i>. Nature Methods, 12(3), 199–202. https://doi.org/10.1038/nmeth.3281[3] https://github.com/ZELLMECHANIK-DRESDEN/dclab[4] https://dclab.readthedocs.io<br>
DOI: 10.15468/dl.mrbzkz
title: Occurrence Download

description: A dataset containing 12350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amanita phalloides",
 "Year 2020-2025"
 ]
}

 The dataset includes 12350 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031357-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e240245
title: HIFLD OPEN Natural Gas Service Territories

description: This feature class/shapefile represents Natural Gas (NG) Local Distribution Company (LDC) Service Territories. NG LDC Service Territories are areas where a company delivers natural gas to its customers. A NG LDC Service Territory may span across several counties or may be as small as a municipal or city area. Geographical area includes the United States.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.3886/e240245v1
title: HIFLD OPEN Natural Gas Service Territories

description: This feature class/shapefile represents Natural Gas (NG) Local Distribution Company (LDC) Service Territories. NG LDC Service Territories are areas where a company delivers natural gas to its customers. A NG LDC Service Territory may span across several counties or may be as small as a municipal or city area. Geographical area includes the United States.
description: Archived from the HIFLD Open GIS data repository, which was deactivated on August 26, 2025.
DOI: 10.15468/dl.6kxybp
title: Occurrence Download

description: A dataset containing 3056 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strumigenys louisianae"
 ]
}

 The dataset includes 3056 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031358-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/gxsvfo
title: Entretien avec Anton Kaunas. Histoire de vie et expériences de déportation en URSS

description: Cet entretien a eu lieu le 25 janvier 2010 à Tangouï (région d'Irkoutsk), Russie, au domicile de l'interviewé. Il a été mené par Emilia Koustova et Alain Blum. L'entretien a été réalisé en russe et traduit et interprété en anglais. Il a duré 58 minutes.
DOI: 10.15468/dl.5rgnx9
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((75.9055 13.43178,128.44458 -49.39201,178.48275 -8.89995,112.89791 30.13989,105.03114 14.72854,86.90786 14.97662,80.6544 21.85349,75.9055 13.43178))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amusium pleuronectes",
 "Year 2000-2025"
 ]
}

 The dataset includes 210 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031359-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djqxqb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acheilognathus asmussii",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031361-251025141854904/datasets/export for details.
DOI: 10.57745/997o31
title: Entretien avec Marytė Kontrimaitė. Histoire de vie et expériences de déportation en URSS

description: Cet entretien a eu lieu le 21 juin 2011 à Vilnius, Lituanie, au domicile de l'interviewée. Il a été mené par Emilia Koustova et Alain Blum. L'entretien a été réalisé en russe et traduit et interprété en français (par Emilia Koustova). Il a duré 1 heure et 26 minutes.
DOI: 10.15468/dl.eg8a5k
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Iran (Islamic Republic of)",
 "TaxonKey is Beta lomatogona"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031363-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eajyn5
title: Occurrence Download

description: A dataset containing 15422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Peru, Bolivia (Plurinational State of), Chile, Argentina)",
 "TaxonKey is Hymenophyllaceae"
 ]
}

 The dataset includes 15422 records from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031362-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdfzt6
title: Occurrence Download

description: A dataset containing 642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Strumigenys ludia"
 ]
}

 The dataset includes 642 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031364-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17602385
title: MSCA: SHINE Database

description: Project 101145914 — SHINE has received funding withing the MSCA framework. The purpose of this project is to construct a generic model describing the solidification-melting process of ultra-high temperature latent heat thermal energy storage systems based on data-driven analysis and rigorous CFD models. Within the project a  database has been created based on simulations by using a 2D CFD model. The present dataset contains information of FeSiB alloy solidification-melting close to 1250 oC (but also aluminium for comparison) inside a cylindrical container, under various heating conditions. 

This database contains versioning and will be enhanced by including a wide variety of 1. metallic-based PCMs, 2. Geometry shapes and dimensions, 3. Operating conditions, 4. Boundary conditions, 5. Modelling strategies (e.g. reduced order models vs. full order models), 6. Phenomena tested (e.g., convection vs. conduction)
DOI: 10.5281/zenodo.17602384
title: MSCA: SHINE Database

description: Project 101145914 — SHINE has received funding withing the MSCA framework. The purpose of this project is to construct a generic model describing the solidification-melting process of ultra-high temperature latent heat thermal energy storage systems based on data-driven analysis and rigorous CFD models. Within the project a  database has been created based on simulations by using a 2D CFD model. The present dataset contains information of FeSiB alloy solidification-melting close to 1250 oC (but also aluminium for comparison) inside a cylindrical container, under various heating conditions. 

This database contains versioning and will be enhanced by including a wide variety of 1. metallic-based PCMs, 2. Geometry shapes and dimensions, 3. Operating conditions, 4. Boundary conditions, 5. Modelling strategies (e.g. reduced order models vs. full order models), 6. Phenomena tested (e.g., convection vs. conduction)
DOI: 10.15468/dl.kbfx94
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acheilognathus cyanostigma",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031366-251025141854904/datasets/export for details.
DOI: 10.15468/dl.qxgbdn
title: Occurrence Download

description: A dataset containing 14576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, Africa, Antarctica, Asia, Oceania, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amanita phalloides",
 "Year 2020-2025"
 ]
}

 The dataset includes 14576 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031365-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26p3kj
title: Occurrence Download

description: A dataset containing 4451197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (France, Saint Barthélemy, French Guiana, Guadeloupe, Saint Martin (French part), Martinique, New Caledonia, French Polynesia, Saint Pierre and Miquelon, Réunion, French Southern Territories, Wallis and Futuna, Mayotte)",
 {
 "not" : {
 "DatasetKey" : [
 "is one of (EOD – eBird Observation Dataset, Observation.org, Nature data from around the World, iNaturalist Research-grade Observations)"
 ]
 }
 },
 {
 "not" : {
 "PublishingCountry" : [
 "is France"
 ]
 }
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is not null",
 "PhylumKey is not null"
 ]
}

 The dataset includes 4451197 records from 1967 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001211-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.