cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2cwynw
title: CCDC 2201609: Experimental Crystal Structure Determination

description: Related Article: Lauriane C. Peyrical, Marie-Rose Ouellet-Du Berger, Maxim Boucher, Mélodie Birepinte, Jean-François Paquin, André B. Charette|2023|Org.Lett.|25|2487|doi:10.1021/acs.orglett.3c00642
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d1f2z
title: CCDC 2205900: Experimental Crystal Structure Determination

description: Related Article: Lauriane C. Peyrical, Marie-Rose Ouellet-Du Berger, Maxim Boucher, Mélodie Birepinte, Jean-François Paquin, André B. Charette|2023|Org.Lett.|25|2487|doi:10.1021/acs.orglett.3c00642
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7860088
title: Llegada Cruceros Puerto de Barcelona

description: Este dataset contiene información de los cruceros que llegan a Barcelona entre las fechas 24/04/2023 y 23/03/2024.
DOI: 10.5281/zenodo.7860087
title: Llegada Cruceros Puerto de Barcelona

description: Este dataset contiene información de los cruceros que llegan a Barcelona entre las fechas 24/04/2023 y 23/03/2024.
DOI: 10.6084/m9.figshare.22686379.v1
title: Processed Diet Data

description: Processed data from, <br> https://doi.org/10.1038/nature12820 <br> and <br> https://github.com/gerberlab/mitre/tree/master/mitre/example_data/david
DOI: 10.6084/m9.figshare.22577866.v2
title: Data to accompany NSI 12-Factor CFA manuscript

description: This dataset includes demographic and raw item scores of the Noetic Signature Inventory. Another file displays model formulas
DOI: 10.5281/zenodo.7860635
title: EDA for Cancer Biologists

description: Few selective datafiles from opensource METABRIC data uploaded here for the convenience of participants of an EDA workshop with R.
DOI: 10.5281/zenodo.7860634
title: EDA for Cancer Biologists

description: Few selective datafiles from opensource METABRIC data uploaded here for the convenience of participants of an EDA workshop with R.
DOI: 10.6084/m9.figshare.22056905.v1
title: TableS2.xlsx

description: Mycena enriched clusters in COMPARE analyses.
DOI: 10.6084/m9.figshare.22686379.v2
title: Processed Diet Data

description: Processed data from, <br> https://doi.org/10.1038/nature12820 <br> and <br> https://github.com/gerberlab/mitre/tree/master/mitre/example_data/david
DOI: 10.6084/m9.figshare.22056950.v1
title: TableS4.xlsx

description: Orthology in Mycena.
DOI: 10.6084/m9.figshare.22056968.v1
title: TableS6.xlsx

description: Table S6. Strain, ecological information, MUCL deposition identifiers, genomic data overview and sources of publication for pre-existing genomes.
DOI: 10.6084/m9.figshare.22686379
title: Processed Diet Data

description: Processed data from, <br> https://doi.org/10.1038/nature12820 <br> and <br> https://github.com/gerberlab/mitre/tree/master/mitre/example_data/david
DOI: 10.6084/m9.figshare.22686379.v3
title: Processed Diet Data

description: Processed data from, <br> https://doi.org/10.1038/nature12820 <br> and <br> https://github.com/gerberlab/mitre/tree/master/mitre/example_data/david
DOI: 10.48328/tudatalib-1129
title: Role of Fe in the hydrogen oxidation reaction in a NiFe-based catalyst: An in situ Mössbauer spectroscopic investigation

description: Nickel-based catalysts reach a high activity for the hydrogen oxidation reaction (HOR) in anion exchange membrane fuel cells. While incorporation of iron significantly decreases the HOR overpotential on NiFe-based catalysts, the reason for the enhanced activity remains only partially understood. For the first time, in situ 57Fe Mössbauer spectroscopy is used to gain insights into the iron-related composition at different potentials. The aim is to evaluate which changes occur on iron at potentials relevant for the HOR on the active Ni sites. It is found that different pre-conditionings at low potentials stabilize the iron at a low oxidation state as compared to the as-prepared catalyst powder. It is likely that the lower average oxidation state enables a higher exchange current density and a more efficient OH adsorption, which make the Volmer step much faster in the HOR. Insights from in situ Mössbauer spectroscopy enlighten the role of iron in the nickel-iron catalyst, paving the way for developing improved Ni-based catalysts for HOR catalysis.
DOI: 10.5281/zenodo.7860457
title: Anexos del artículo "Intervenciones basadas en Mindfulness (MBI) en estudiantes universitarios: Revisión sistemática y fundamentos neuroeducativos"

description: Material complementario a revisión bibliográfica titulada "Intervenciones basadas en Mindfulness (MBI) en estudiantes universitarios: Revisión sistemática y fundamentos neuroeducativos"
DOI: 10.5281/zenodo.7860458
title: Anexos del artículo "Intervenciones basadas en Mindfulness (MBI) en estudiantes universitarios: Revisión sistemática y fundamentos neuroeducativos"

description: Material complementario a revisión bibliográfica titulada "Intervenciones basadas en Mindfulness (MBI) en estudiantes universitarios: Revisión sistemática y fundamentos neuroeducativos"
DOI: 10.6084/m9.figshare.22688152
title: shell scripts, R scripts, and data required to reproduce the main analyses in Sokolowski et al., 2023

description: These directories contain the scripts (shell and R) and data required for the primary analysis of Sokolowski et al., 2023. Title: Transcriptomic effects of the foraging gene shed light on pathways of pleiotropy and plasticity. Athors: Authors: Dustin J. Sokolowski1,2*, Oscar E. Vasquez3*, Michael D. Wilson1,2, Marla B. Sokolowski3,4, Ina Anreiter5 <br> Author Affiliations *Authors contributed equally 1Genetics and Genome Biology, SickKids Research Institute, Toronto, ON, Canada 2Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada 3Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada 4Program in Child and Brain Development, Canadian Institute for Advanced Research, ON, Canada. 5Department of Biological Sciences, University of Toronto Scarborough, Toronto, ON, Canada Corresponding Author For Manuscript: ina-dot-anreiter-at-utoronto-dot-ca Data analysis and figshare generator: dustin-dot-sokolowski-at-sickkids-dot-ca - alternative email (for when moved on from PhD) - djsokolowski95-at-gmail-dot-com <br> Each folder has it's own readme explaining the contents within. Directories have not been changed. Therefore to re-generate any output, they would need to be switched for the indivudal The raw and processed data (outside of the fastq, bw, and bam files) to regenerate the major analyses of each paper are the in /data subdirectory already. This includes all of the DEGs, pathways, varimax genes, scMappR outputs, SNP vcf files etc. <br> The sequencing information associated with these data can be found on arrayexpress https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-12688?query=foraging <br> R packages used: - scMappR - DESeq2 - gplots - edgeR - reshape2 - ggplot2 - TxDb.Dmelanogaster.UCSC.dm6.ensGene - org.Dm.eg.db - ChIPseeker - ggfortify - scales - xlsx - ActivePathways - DEET - Seurat - WGCNA - pheatmap - gProfileR - dplyr - reshape <br> Genomics command-line modules used: - fastqc - STAR - trimmomatic - bwa - samtools - bedtools - bcftools - gatk (picard) - featurecounts - qualimap - DeepTools <br> <br>
DOI: 10.5281/zenodo.4065850
title: Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences

description: This repository consists of minisatellite VNTR genotypes for 2,800 samples (2,770 individuals). The raw VCF files were produced using VNTRseek on xxx data sources: 30 high coverage WGS datasets from the 1000 Genomes Project phase 3, 2,504 unrelated genomes from New York Genome Center (NYGC), 253 genomes from Simons Diversity Genome Project (SGDP), two tumor-normal breast cancer samples from Illumina Basespace, haploid genomes CHM1 and CHM13, and seven genomes from the Personal Genome Project from the Genome In A Bottle Consortium (GIAB). Raw VCF files are provided for each data source separately. The raw VCF files were preprocessed (preprocess.sh) to extract genotypes and provided in VNTRseek_preprocessed_data.tar.gz (uncompressed size 10G). The R Markdown code to analyze the preprocessed data and produce figures and tables is also provided (tables_and_figures.Rmd). For more information see the ReadMe file. This work was supported in part by NSF grants IIS-1423022 and DBI-1559829.
DOI: 10.5281/zenodo.4579874
title: Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences

description: This repository consists of minisatellite VNTR genotypes for 2,800 samples (2,770 individuals). The raw VCF files were produced using VNTRseek on xxx data sources: 30 high coverage WGS datasets from the 1000 Genomes Project phase 3, 2,504 unrelated genomes from New York Genome Center (NYGC), 253 genomes from Simons Diversity Genome Project (SGDP), two tumor-normal breast cancer samples from Illumina Basespace, haploid genomes CHM1 and CHM13, and seven genomes from the Personal Genome Project from the Genome In A Bottle Consortium (GIAB). Raw VCF files are provided for each data source separately. The raw VCF files were preprocessed (preprocess.sh) to extract genotypes and provided in VNTRseek_preprocessed_data.tar.gz (uncompressed size 10G). The R Markdown code to analyze the preprocessed data and produce figures and tables is also provided (tables_and_figures.Rmd). For more information see the ReadMe file. This work was supported in part by NSF grants IIS-1423022 and DBI-1559829.
DOI: 10.5281/zenodo.4065849
title: Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences

description: This repository consists of minisatellite VNTR genotypes for 2,800 samples (2,770 individuals). The raw VCF files were produced using VNTRseek on xxx data sources: 30 high coverage WGS datasets from the 1000 Genomes Project phase 3, 2,504 unrelated genomes from New York Genome Center (NYGC), 253 genomes from Simons Diversity Genome Project (SGDP), two tumor-normal breast cancer samples from Illumina Basespace, haploid genomes CHM1 and CHM13, and seven genomes from the Personal Genome Project from the Genome In A Bottle Consortium (GIAB). Raw VCF files are provided for each data source separately. The raw VCF files were preprocessed (preprocess.sh) to extract genotypes and provided in VNTRseek_preprocessed_data.tar.gz (uncompressed size 10G). The R Markdown code to analyze the preprocessed data and produce figures and tables is also provided (tables_and_figures.Rmd). For more information see the ReadMe file. This work was supported in part by NSF grants IIS-1423022 and DBI-1559829.
DOI: 10.5281/zenodo.7860641
title: Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences

description: This repository consists of minisatellite VNTR genotypes for 2,800 samples (2,770 individuals). The raw VCF files were produced using VNTRseek on xxx data sources: 30 high coverage WGS datasets from the 1000 Genomes Project phase 3, 2,504 unrelated genomes from New York Genome Center (NYGC), 253 genomes from Simons Diversity Genome Project (SGDP), two tumor-normal breast cancer samples from Illumina Basespace, haploid genomes CHM1 and CHM13, and seven genomes from the Personal Genome Project from the Genome In A Bottle Consortium (GIAB). Raw VCF files are provided for each data source separately. The raw VCF files were preprocessed (preprocess.sh) to extract genotypes and provided in VNTRseek_preprocessed_data.tar.gz (uncompressed size 10G). The R Markdown code to analyze the preprocessed data and produce figures and tables is also provided (tables_and_figures.Rmd). For more information see the ReadMe file. This work was supported in part by NSF grants IIS-1423022 and DBI-1559829.
DOI: 10.17595/20230425.001
title: Atmospheric carbon dioxide monitoring using volunteer observing ship (TRANS HARMONY 1) servicing between Japan and Southeast Asia

description: Data of atmosphere carbon dioxide monitoring using volunteer observing ship (TRANS HARMONY 1) servicing between Japan and Southeast Asia. This data contains the cruise track, carbon dioxide variables at the sea level atmosphere, parameters of atmosphere (temperature, sea level pressure) .
DOI: 10.5281/zenodo.7858513
title: Dataset of "Challenging Point Scanning across Electron Microscopy and Optical Imaging using Computational Imaging"

description: Dataset containing the jupyter notebook with codes for the simulation of the structured illumination patterns used for image reconstruction (the simulation parameters have been optimized to make sure that the patterns were almost identical to the experimental ones), the reconstruction algorithms. Moreover, there are three experimental dataset saved as txxt file, where each line contains the six biases applied to the electron modulator and the intensity measured by the single pixel detector that we used.
DOI: 10.5281/zenodo.7858512
title: Dataset of "Challenging Point Scanning across Electron Microscopy and Optical Imaging using Computational Imaging"

description: Dataset containing the jupyter notebook with codes for the simulation of the structured illumination patterns used for image reconstruction (the simulation parameters have been optimized to make sure that the patterns were almost identical to the experimental ones), the reconstruction algorithms. Moreover, there are three experimental dataset saved as txxt file, where each line contains the six biases applied to the electron modulator and the intensity measured by the single pixel detector that we used.
DOI: 10.5281/zenodo.7858423
title: Dataset of "Near-real-time diagnosis of electron optical phase aberrations in scanning transmission electron microscopy using an artificial neural network"

description: Dataset containing the jupyter notebook used to construct the database of image, to model and train ANN and to analyze the experimental data. Furthermore there are also a reduced database of 100 images that can be utilized to test the ANN, the h5 file containing the ANN weigths and other supporting files.
DOI: 10.5281/zenodo.7858424
title: Dataset of "Near-real-time diagnosis of electron optical phase aberrations in scanning transmission electron microscopy using an artificial neural network"

description: Dataset containing the jupyter notebook used to construct the database of image, to model and train ANN and to analyze the experimental data. Furthermore there are also a reduced database of 100 images that can be utilized to test the ANN, the h5 file containing the ANN weigths and other supporting files.
DOI: 10.5281/zenodo.7858372
title: Dataset of "Theoretical and practical aspects of the design and production of synthetic holograms for transmission electron microscopy"

description: Dataset with script and article images published in https://doi.org/10.1063/5.0067528
DOI: 10.5281/zenodo.7858373
title: Dataset of "Theoretical and practical aspects of the design and production of synthetic holograms for transmission electron microscopy"

description: Dataset with script and article images published in https://doi.org/10.1063/5.0067528
DOI: 10.5281/zenodo.7860668
title: OSEMOSYS CAMEROON SCENARIOS

description: OSEMOSYS CAMEROON SCENARIOS
DOI: 10.5281/zenodo.7860667
title: OSEMOSYS CAMEROON SCENARIOS

description: OSEMOSYS CAMEROON SCENARIOS
DOI: 10.21227/73ax-5d65
title: Output of a 12000 KW Solar PV power Plant with Latitude and longitude coordinates of 17.93° N, 80.83° E- Report for 1 st December 2018				

description: The data pertaining to a 12000 KW Grid-connected Solar Photo voltaic plant is added for use by reserachers.
DOI: 10.6084/m9.figshare.22688164
title: Survey of IV Fluid Contamination with Key

description: A solution key for the article, <em><strong>GPT-4 Underperforms Experts in Detecting IV Fluid Contamination, </strong></em>by Spies et al.
DOI: 10.6084/m9.figshare.22688164.v1
title: Survey of IV Fluid Contamination with Key

description: A solution key for the article, <em><strong>GPT-4 Underperforms Experts in Detecting IV Fluid Contamination, </strong></em>by Spies et al.
DOI: 10.5517/ccdc.csd.cc2dc0rk
title: CCDC 2215128: Experimental Crystal Structure Determination

description: Related Article: Chongyang Wu, Tao Ying, Hangqian Fan, Chenhui Hu, Weike Su, Jingbo Yu|2023|Org.Lett.|25|2531|doi:10.1021/acs.orglett.3c00684
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dd5mm
title: CCDC 2216240: Experimental Crystal Structure Determination

description: Related Article: Ruijie Mi, Zhiying Ding, Songjie Yu, Robert H. Crabtree, Xingwei Li|2023|J.Am.Chem.Soc.|145|8150|doi:10.1021/jacs.3c01162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dd5nn
title: CCDC 2216241: Experimental Crystal Structure Determination

description: Related Article: Ruijie Mi, Zhiying Ding, Songjie Yu, Robert H. Crabtree, Xingwei Li|2023|J.Am.Chem.Soc.|145|8150|doi:10.1021/jacs.3c01162
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13145/bacdive103765.20171208.2.1
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103766.20171208.2.1
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103767.20171208.2.1
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103768.20171208.2.1
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103769.20171208.2.1
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive103770.20171208.2.1
title: Rhodococcus sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive104662.20171208.2.1
title: Nocardioides sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive104663.20171208.2.1
title: Nocardioides sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive104665.20171208.2.1
title: Nocardioides sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive104666.20171208.2.1
title: Nocardioides sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive104668.20171208.2.1
title: Nocardioides sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105424.20171208.2.1
title: Saccharopolyspora erythraea

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105425.20171208.2.1
title: Saccharopolyspora erythraea

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105427.20171208.2.1
title: Saccharopolyspora erythraea

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105431.20171208.2.1
title: Saccharopolyspora sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105432.20171208.2.1
title: Saccharomonospora viridis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105433.20171208.2.1
title: Saccharomonospora sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive105434.20171208.2.1
title: Micropolyspora sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106265.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106267.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106268.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106269.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106270.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive106271.20171208.2.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.