cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12122007
title: Supplementary Material for: A Rational Use of Clozapine Based on Adverse Drug Reactions, Pharmacokinetics, and Clinical Pharmacopsychology

description: Using Richardson and Davidson’s model and the sciences of pharmacokinetics and clinical pharmacopsychology, this article reviewed the: (1) poor life expectancy associated with treatment-resistant schizophrenia (TRS), which may be improved in patients who adhere to clozapine; (2) findings that clozapine is the best treatment for TRS (according to efficacy, effectiveness and well-being); and (3) potential for clozapine to cause vulnerabilities, including potentially lethal adverse drug reactions such as agranulocytosis, pneumonia, and myocarditis. Rational use requires: (1) modification of the clozapine package insert worldwide to include lower doses for Asians and to avoid the lethality associated with pneumonia, (2) the use of clozapine levels for personalizing dosing, and (3) the use of slow and personalized titration. This may make clozapine as safe as possible and contribute to increased life expectancy and well-being. In the absence of data on COVID-19 in clozapine patients, clozapine possibly impairs immunological mechanisms and may increase pneumonia risk in infected patients. Psychiatrists should call their clozapine patients and families and explain to them that if the patient develops fever or flu-like symptoms, the psychiatrist should be called and should consider halving the clozapine dose. If the patient is hospitalized with pneumonia, the treating physician needs to assess for symptoms of clozapine intoxication since halving the dose may not be enough for all patients; consider decreasing it to one-third or even stopping it. Once the signs of inflammation and fever have disappeared, the clozapine dose can be slowly increased to the prior dosage level.
DOI: 10.6084/m9.figshare.12121938
title: Growth standard comparison between WHO and Indonesian Growth Chart-Population Data

description: This is the raw data of a population study in Oeolo, East Nusa Tenggara, Indonesia. The data includes the demographic characteristics and the nutrition of status of the children under five in that area.<br>Categories for weight-age (WHO and Indonesian):1=severely underweight2=underweight3=normal<br>Categories for height-age (WHO and Indonesian):1=severely stunted2=stunted3=normal<br><br>
DOI: 10.6084/m9.figshare.12121872
title: Richardson_Lucy deconvolution, Matlab

description: This is a Matlab script for Richardson_Lucy deconvolution demo, PSF is Extracted from SmartDeblur-2.3_mac_PRO
DOI: 10.6084/m9.figshare.12121887
title: Questionnaire-household cooking and cardiovascular diseases

description: Questionnaire for collecting data on biomass use and cardiovascular diseases<br>
DOI: 10.6084/m9.figshare.12121863
title: Additional file 3 of GbAt11 gene cloned from Gossypium barbadense mediates resistance to Verticillium wilt in Gossypium hirsutum

description: Additional file 3. (XLS 215535 kb)
DOI: 10.6084/m9.figshare.12121872.v1
title: Richardson_Lucy deconvolution, Matlab

description: This is a Matlab script for Richardson_Lucy deconvolution demo, PSF is Extracted from SmartDeblur-2.3_mac_PRO
DOI: 10.6084/m9.figshare.12121863.v1
title: Additional file 3 of GbAt11 gene cloned from Gossypium barbadense mediates resistance to Verticillium wilt in Gossypium hirsutum

description: Additional file 3. (XLS 215535 kb)
DOI: 10.6084/m9.figshare.12121860
title: Additional file 2 of GbAt11 gene cloned from Gossypium barbadense mediates resistance to Verticillium wilt in Gossypium hirsutum

description: Additional file 2.
DOI: 10.6084/m9.figshare.12121887.v2
title: Questionnaire-household cooking and cardiovascular diseases

description: Questionnaire for collecting data on biomass use and cardiovascular diseases<br>
DOI: 10.6084/m9.figshare.12121938.v1
title: Raw data for total population.sav

description: This is the raw data of a population study in Oeolo, East Nusa Tenggara, Indonesia. The data includes the demographic characteristics and the nutrition of status of the children under five in that area.
DOI: 10.6084/m9.figshare.12121857
title: Additional file 1 of GbAt11 gene cloned from Gossypium barbadense mediates resistance to Verticillium wilt in Gossypium hirsutum

description: Additional file 1.
DOI: 10.6084/m9.figshare.12121860.v1
title: Additional file 2 of GbAt11 gene cloned from Gossypium barbadense mediates resistance to Verticillium wilt in Gossypium hirsutum

description: Additional file 2.
DOI: 10.6084/m9.figshare.12121887.v1
title: Questionnaire-household cooking and cardiovascular diseases

description: Questionnaire for collecting data on biomass use and cardiovascular diseases<br>
DOI: 10.6084/m9.figshare.12121848
title: Additional file 7 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 7: Table S5. Data supporting CAZyme expression analysis. Gene lists used to generate Venn diagrams depicted in Fig. 5c and d are given including Venn diagram intersections, the CAZyme encoding genes, FPKM transcription levels and classification underlying Fig. 4e are given, as are gene identifiers corresponding to proteins targeted with proteomics (Additional file 8: Fig. S3).
DOI: 10.6084/m9.figshare.12121854
title: Additional file 9 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 9: Table S6. Secondary metabolite gene clusters expressed under lignocellulose conditions, as identified by RNA-Seq. Genes encoding backbone enzymes and cluster borders were based on Inglis et al. (69), backbone enzyme type and product were taken from Romsdahl et al. (74). Co-expression of genes belonging to each cluster, including backbone-encoding genes, is indicated in a summary column. Gene expression values are given as mean of FPKM values per condition.
DOI: 10.6084/m9.figshare.12121857.v1
title: Additional file 1 of GbAt11 gene cloned from Gossypium barbadense mediates resistance to Verticillium wilt in Gossypium hirsutum

description: Additional file 1.
DOI: 10.6084/m9.figshare.12121845
title: Additional file 6 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 6: Table S4. PCA loadings and enrichment of GO-terms in genes distinguishing sample clusters. Loadings of genes on the first 10 components are given of the PCA analysis of all cultivation conditions, and of those from the 9 h and 12 h time points of the Miscanthus time course. Results are included of GO-enrichment analysis (via gProfiler) of genes with high loadings on the PCA components corresponding to the sample clusters identified in Fig. 2, i.e. Cluster 1 PCA1 0; Cluster 3 PCA1 0; Cluster 3a PCA1 0 PCA3 &gt; 0. GO-enrichment analysis are also included for 9 h and 12 h Miscanthus conditions PCA1 0 (Wheat straw specific).
DOI: 10.6084/m9.figshare.12121848.v1
title: Additional file 7 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 7: Table S5. Data supporting CAZyme expression analysis. Gene lists used to generate Venn diagrams depicted in Fig. 5c and d are given including Venn diagram intersections, the CAZyme encoding genes, FPKM transcription levels and classification underlying Fig. 4e are given, as are gene identifiers corresponding to proteins targeted with proteomics (Additional file 8: Fig. S3).
DOI: 10.6084/m9.figshare.12121854.v1
title: Additional file 9 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 9: Table S6. Secondary metabolite gene clusters expressed under lignocellulose conditions, as identified by RNA-Seq. Genes encoding backbone enzymes and cluster borders were based on Inglis et al. (69), backbone enzyme type and product were taken from Romsdahl et al. (74). Co-expression of genes belonging to each cluster, including backbone-encoding genes, is indicated in a summary column. Gene expression values are given as mean of FPKM values per condition.
DOI: 10.6084/m9.figshare.12121938.v2
title: Growth standard comparison between WHO and Indonesian Growth Chart

description: This is the raw data of a population study in Oeolo, East Nusa Tenggara, Indonesia. The data includes the demographic characteristics and the nutrition of status of the children under five in that area.
DOI: 10.6084/m9.figshare.12121845.v1
title: Additional file 6 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 6: Table S4. PCA loadings and enrichment of GO-terms in genes distinguishing sample clusters. Loadings of genes on the first 10 components are given of the PCA analysis of all cultivation conditions, and of those from the 9 h and 12 h time points of the Miscanthus time course. Results are included of GO-enrichment analysis (via gProfiler) of genes with high loadings on the PCA components corresponding to the sample clusters identified in Fig. 2, i.e. Cluster 1 PCA1 0; Cluster 3 PCA1 0; Cluster 3a PCA1 0 PCA3 &gt; 0. GO-enrichment analysis are also included for 9 h and 12 h Miscanthus conditions PCA1 0 (Wheat straw specific).
DOI: 10.6084/m9.figshare.12121836
title: Additional file 4 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 4: Table S3. Mapping transcript level data to a genome-wide metabolic model. Gene transcript levels were mapped to enzyme activities, and converted to an expression value per enzyme activity (ECx.x.x.x) number. Genes mapped to the EC number are indicated. Pathways are listed that were found significantly enriched in clusters after mapping of the activities to databases with metabolic pathways, as well as an overview of all KEGG pathways to which EC numbers were mapped.
DOI: 10.6084/m9.figshare.12121938.v3
title: Growth standard comparison between WHO and Indonesian Growth Chart-Population Data

description: This is the raw data of a population study in Oeolo, East Nusa Tenggara, Indonesia. The data includes the demographic characteristics and the nutrition of status of the children under five in that area.
DOI: 10.6084/m9.figshare.12121824
title: Additional file 2 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 2: Table S1. File with lists of enriched GO terms in genes with reduced transcript abundance. Enriched GO terms (and the genes in the list responsible for the enrichment) from the enrichment analysis of the genes that were repressed in the comparison of the Glu 48 h control with untreated and pretreated Miscanthus.
DOI: 10.6084/m9.figshare.12121830
title: Additional file 3 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 3: Table S2. File with lists of enriched GO terms in genes with increased transcript abundance. Enriched GO terms (and the genes in the list responsible for the enrichment) from the enrichment analysis of the genes that were induced in the comparison of the Glu 48 h control with untreated and pretreated Miscanthus.
DOI: 10.6084/m9.figshare.12121836.v1
title: Additional file 4 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 4: Table S3. Mapping transcript level data to a genome-wide metabolic model. Gene transcript levels were mapped to enzyme activities, and converted to an expression value per enzyme activity (ECx.x.x.x) number. Genes mapped to the EC number are indicated. Pathways are listed that were found significantly enriched in clusters after mapping of the activities to databases with metabolic pathways, as well as an overview of all KEGG pathways to which EC numbers were mapped.
DOI: 10.6084/m9.figshare.12121830.v1
title: Additional file 3 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 3: Table S2. File with lists of enriched GO terms in genes with increased transcript abundance. Enriched GO terms (and the genes in the list responsible for the enrichment) from the enrichment analysis of the genes that were induced in the comparison of the Glu 48 h control with untreated and pretreated Miscanthus.
DOI: 10.6084/m9.figshare.12121938.v4
title: Growth standard comparison between WHO and Indonesian Growth Chart-Population Data

description: This is the raw data of a population study in Oeolo, East Nusa Tenggara, Indonesia. The data includes the demographic characteristics and the nutrition of status of the children under five in that area.
DOI: 10.6084/m9.figshare.12121824.v1
title: Additional file 2 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 2: Table S1. File with lists of enriched GO terms in genes with reduced transcript abundance. Enriched GO terms (and the genes in the list responsible for the enrichment) from the enrichment analysis of the genes that were repressed in the comparison of the Glu 48 h control with untreated and pretreated Miscanthus.
DOI: 10.6084/m9.figshare.12121812
title: Additional file 11 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 11: Table S8. Primers used for qRT-PCR analysis. Nucleotide sequences of primers are given together with gene identifiers.
DOI: 10.6084/m9.figshare.12121812.v1
title: Additional file 11 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 11: Table S8. Primers used for qRT-PCR analysis. Nucleotide sequences of primers are given together with gene identifiers.
DOI: 10.6084/m9.figshare.12121803
title: Additional file 10 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 10: Table S7. Gene expression as identified by RNA-Seq, and corresponding statistical analysis. Gene identifiers and annotations are provided along with the FPKM values for each sample and condition, the fold change and padj values as calculated by DESeq 2 for the comparison between the Glu 48 h control and the other conditions.
DOI: 10.6084/m9.figshare.12121803.v1
title: Additional file 10 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

description: Additional file 10: Table S7. Gene expression as identified by RNA-Seq, and corresponding statistical analysis. Gene identifiers and annotations are provided along with the FPKM values for each sample and condition, the fold change and padj values as calculated by DESeq 2 for the comparison between the Glu 48 h control and the other conditions.
DOI: 10.6084/m9.figshare.12121743
title: uniprot-reference-genome-info

description: uniprot-reference-genome-info
DOI: 10.6084/m9.figshare.12121716
title: processing

description: processing
DOI: 10.6084/m9.figshare.12121719
title: PLAAC-results

description: PLAAC-results
DOI: 10.6084/m9.figshare.12121728
title: Z-stack image acquisition using Optotune tunable lens

description: This is a Matlab scipt for Z-stack image acquisition using Optotune tunable lens EL-16-40-TC and Lemunera camera Lt425.
DOI: 10.6084/m9.figshare.12121743.v1
title: uniprot-reference-genome-info

description: uniprot-reference-genome-info
DOI: 10.6084/m9.figshare.12121713
title: GToTree_output

description: GToTree_output
DOI: 10.6084/m9.figshare.12121719.v1
title: PLAAC-results

description: PLAAC-results
DOI: 10.6084/m9.figshare.12121728.v1
title: Z-stack image acquisition using Optotune tunable lens

description: This is a Matlab scipt for Z-stack image acquisition using Optotune tunable lens EL-16-40-TC and Lemunera camera Lt425.
DOI: 10.6084/m9.figshare.12121704
title: README.txt

description: README.txt for this repo
DOI: 10.6084/m9.figshare.12121713.v1
title: GToTree_output

description: GToTree_output
DOI: 10.6084/m9.figshare.12121671
title: Preventing clinically relevant pancreatic fistula with combination of linear stapling plus continuous suture of the stump in laparoscopic distal pancreatectomy.xlsx

description: Preventing clinically relevant pancreatic fistula with combination of linear stapling plus continuous suture of the stump in laparoscopic distal pancreatectomy
DOI: 10.6084/m9.figshare.12121704.v2
title: README.txt

description: README.txt for this repo
DOI: 10.6084/m9.figshare.12121716.v1
title: processing

description: processing
DOI: 10.6084/m9.figshare.12121665
title: Trained graph network models using megnet

description: Trained megnet models
DOI: 10.6084/m9.figshare.12121671.v1
title: Preventing clinically relevant pancreatic fistula with combination of linear stapling plus continuous suture of the stump in laparoscopic distal pancreatectomy.xlsx

description: Preventing clinically relevant pancreatic fistula with combination of linear stapling plus continuous suture of the stump in laparoscopic distal pancreatectomy
DOI: 10.6084/m9.figshare.12121704.v1
title: README.txt

description: README.txt for this repo
DOI: 10.6084/m9.figshare.12121656
title: Particle1_4DSTEM.json

description: JSON file for Particle 4DSTEM npy data
DOI: 10.6084/m9.figshare.12121716.v2
title: processing

description: processing
DOI: 10.6084/m9.figshare.12121656.v1
title: Particle1_4DSTEM.json

description: JSON file for Particle 4DSTEM npy data
DOI: 10.6084/m9.figshare.12121551
title: Raw data of each organism at each sub location with each field and the community occurrence 4-13-20.xlsx

description: Raw data used for the manuscript titled "<b>Associations among the communities of soil-borne organisms, soil edaphic properties and disease incidence in the field pea root rot complex"</b>
DOI: 10.6084/m9.figshare.12121716.v5
title: processing

description: processing
DOI: 10.6084/m9.figshare.12121716.v4
title: processing

description: processing
DOI: 10.6084/m9.figshare.12121533
title: COVID-19 prediction dataset

description: This is the data set for the COVID-19 prediction, data is referred the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE).We used SEIR model and Logistic Model to predict short-term and peak of COVID-19 outbreak. Data is from the event start till Mar. 20 2020.
DOI: 10.6084/m9.figshare.12121545
title: Agendas legislativas da Federação das Indústrias do Estado do Paraná

description: O banco de dados foi elaborado no Núcleo de Pesquisa e Prática em Ciência Política (NuPP-CiPol) do Centro Universitário Internacional UNINTER, a partir de uma tipologia criada pelo próprio Núcleo, que classifica os temas das Agendas Legislativas da Federação das Indústrias do Estado do Paraná (FIEP). Os temas de interesse da FIEP foram: assuntos econômicos, infraestrutura, meio ambiente, política social, questões institucionais, relações de trabalho, responsabilidade social e tributos. Foram analisados ​​documentos oficiais sobre tramitação legislativa na Assembleia Legislativa do Paraná (ALEP) com base em monitoramento legislativo iniciado pelo Núcleo de Assuntos Legislativos da FIEP e finalizado durante uma pesquisa. As fontes do trabalho foram as Agendas Legislativas da FIEP de 2006 a 2014 e o Portal da Assembléia Legislativa do Estado do Paraná (aba Pesquisa Legislativa). A última atualização do banco de dados foi no dia 22 de maio de 2018, quando foi executada uma última consulta da situação final das legislativas em Pesquisa Legislativa do Portal da ALEP. Como principais variáveis ​​utilizadas no banco de dados foram: i. Espécies legislativas, onde classificai uma espécie de proposições legislativas; ii. Tema, onde coletei as informações sobre as temáticas de interesse da Federação; iii. Subtema, conforme classificação das agendas Legislativas da FIEP; iv. Autor, que é o deputado estadual ou o governador que iniciou uma proposta; v. Iniciativa, ou seja, qual é o poder veio da iniciativa, se o Legislativo ou o Executivo; vi. Posicionamento da FIEP, convergente ou divergente em relação à matéria; vii. Posicionamento do Poder Legislativo, favorável ou contrário à tramitação do projeto; viii. O Alinhamento Legislativo-FIEP, isto é, não existe ou não está alinhado entre a ALEP e a Federação, ou pode gerar um índice de convergência de interesses; ix. Posicionamento do Poder Executivo, favorável ou contrário ao previsto no projeto; x. Alinhamento Executivo-FIEP, isto é, não existe ou não está alinhado entre o governo do estado e a Federação das Indústrias, ou pode gerar um índice de convergência de interesses; XI. Situação final da Espécie Legislativa, isto é, qual a situação final da proposta conforme uma consulta feita no site da ALEP; e xii. Sucesso, isto é, é um FIEP alcançou sucesso em sua demanda.<br>
DOI: 10.6084/m9.figshare.12121545.v1
title: Agendas legislativas da Federação das Indústrias do Estado do Paraná

description: O banco de dados foi elaborado no Núcleo de Pesquisa e Prática em Ciência Política (NuPP-CiPol) do Centro Universitário Internacional UNINTER, a partir de uma tipologia criada pelo próprio Núcleo, que classifica os temas das Agendas Legislativas da Federação das Indústrias do Estado do Paraná (FIEP). Os temas de interesse da FIEP foram: assuntos econômicos, infraestrutura, meio ambiente, política social, questões institucionais, relações de trabalho, responsabilidade social e tributos. Foram analisados ​​documentos oficiais sobre tramitação legislativa na Assembleia Legislativa do Paraná (ALEP) com base em monitoramento legislativo iniciado pelo Núcleo de Assuntos Legislativos da FIEP e finalizado durante uma pesquisa. As fontes do trabalho foram as Agendas Legislativas da FIEP de 2006 a 2014 e o Portal da Assembléia Legislativa do Estado do Paraná (aba Pesquisa Legislativa). A última atualização do banco de dados foi no dia 22 de maio de 2018, quando foi executada uma última consulta da situação final das legislativas em Pesquisa Legislativa do Portal da ALEP. Como principais variáveis ​​utilizadas no banco de dados foram: i. Espécies legislativas, onde classificai uma espécie de proposições legislativas; ii. Tema, onde coletei as informações sobre as temáticas de interesse da Federação; iii. Subtema, conforme classificação das agendas Legislativas da FIEP; iv. Autor, que é o deputado estadual ou o governador que iniciou uma proposta; v. Iniciativa, ou seja, qual é o poder veio da iniciativa, se o Legislativo ou o Executivo; vi. Posicionamento da FIEP, convergente ou divergente em relação à matéria; vii. Posicionamento do Poder Legislativo, favorável ou contrário à tramitação do projeto; viii. O Alinhamento Legislativo-FIEP, isto é, não existe ou não está alinhado entre a ALEP e a Federação, ou pode gerar um índice de convergência de interesses; ix. Posicionamento do Poder Executivo, favorável ou contrário ao previsto no projeto; x. Alinhamento Executivo-FIEP, isto é, não existe ou não está alinhado entre o governo do estado e a Federação das Indústrias, ou pode gerar um índice de convergência de interesses; XI. Situação final da Espécie Legislativa, isto é, qual a situação final da proposta conforme uma consulta feita no site da ALEP; e xii. Sucesso, isto é, é um FIEP alcançou sucesso em sua demanda.<br>
DOI: 10.6084/m9.figshare.12121533.v1
title: COVID-19-prediction dataset

description: This is the data set for the COVID-19 prediction, data is referred the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE).We used SEIR model and Logistic Model to predict short-term and peak of COVID-19 outbreak. Data is from the event start till Mar. 20 2020.