cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bk22tp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hybognathus nuchalis",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034704-251025141854904/datasets/export for details.
DOI: 10.15468/dl.ptxauz
title: Occurrence Download

description: A dataset containing 16214 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.7688 23.54913, -109.6188 23.54913, -109.6188 23.69913, -109.7688 23.69913, -109.7688 23.54913))"
 ]
}

 The dataset includes 16214 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034705-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5dg4ev
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hybognathus placitus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034706-251025141854904/datasets/export for details.
DOI: 10.15468/dl.mqpwqe
title: Occurrence Download

description: A dataset containing 13471 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.6188 23.54913, -109.4688 23.54913, -109.4688 23.69913, -109.6188 23.69913, -109.6188 23.54913))"
 ]
}

 The dataset includes 13471 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034707-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pv5fme
title: Occurrence Download

description: A dataset containing 22748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Typhula",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22748 records from 358 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034708-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6s5a28
title: Occurrence Download

description: A dataset containing 45426 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphaenogaster Mayr, 1853"
 ]
}

 The dataset includes 45426 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011850-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7arpy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.9648 19.8496,8.9648 19.8496,8.9648 10.8496,17.9648 10.8496,17.9648 19.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011852-250525065834625/datasets/export for details.
DOI: 10.15468/dl.2utph4
title: Occurrence Download

description: A dataset containing 85337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynoglossum officinale L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 85337 records from 834 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011844-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttwhv7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galaxias Cuvier, 1816",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((9.2698 2.0276,9.1702 1.8496,17.9648 1.8496,17.9648 10.8496,8.9648 10.8496,8.9648 2.8113,8.9984 2.8234,9.2654 3.2175,9.4253 3.0783,9.2698 2.0276))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011853-250525065834625/datasets/export for details.
DOI: 10.15468/dl.b9wx64
title: Occurrence Download

description: A dataset containing 33225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cynosurus echinatus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 33225 records from 582 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011855-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5b4g5y
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Buchloe dactyloides (Nutt.) Engelm.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 341 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007323-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.q573n5tm9
title: Genetic and morphological data from two bird genera (Cranioleuca and Geospiza) showing continuous variation

description: Extinction is a dominant force shaping patterns of biodiversity through
 time however its role as a catalyst of speciation has been overlooked.
 Here, we synthesize ideas alluded to by Darwin and others into the model
 of ‘speciation-by-extinction’ in which speciation results from the
 extinction of intermediate populations within a single geographically
 variable species. We explore the properties and distinguishing features of
 speciation-by-extinction with respect to other established speciation
 models. We demonstrate its plausibility by showing that the experimental
 extinction of populations within variable species can result in
 speciation. The prerequisites for speciation-by-extinction, geographically
 structured intraspecific variation and local extinction, are ubiquitous in
 nature, indicating that speciation-by-extinction may be a prevalent, but
 underappreciated, speciation mechanism.
description: See
 README
description: See
 README
DOI: 10.5061/dryad.8931zcrsv
title: Data from: Site fidelity increases reproductive success by increasing foraging efficiency in a marine predator

description: Seabirds must find food efficiently in the dynamic ocean environment to
 succeed at raising chicks. In theory, site familiarity, gained by prior
 experience in a place, should increase foraging efficiency when prey is
 predictable, and translate into increased reproductive success, though
 this is difficult to test empirically. To address this, we examined
 foraging-site fidelity in Magellanic penguins, Spheniscus magellanicus,
 using movement data from 180 individuals tracked during 23 breeding
 seasons when penguins make repeated trips from their colony to feed
 chicks. We tested whether chlorophyll-a concentration, as a proxy for
 ocean productivity, affects foraging-site fidelity. We then tested whether
 foraging-site fidelity affects foraging efficiency and reproductive
 success. Mean foraging-site fidelity was higher in years with higher ocean
 productivity, when fronts had stronger gradients in temperature and
 chlorophyll, and prey was likely more predictable. When returning to
 previously visited foraging sites, penguins arrived and returned faster
 than predicted for a trip of a given distance, leading to lower mean trip
 durations and more frequent trips in penguins with high site fidelity.
 Increased foraging efficiency and chick-feeding frequency in turn led to
 increased chick survival. Our study reveals that foraging efficiency is a
 key mechanism linking foraging-site fidelity and reproductive success.
DOI: 10.5061/dryad.vq83bk3vs
title: Data from: A genotyping-in-thousands by sequencing panel to inform invasive deer management using non-invasive fecal and hair samples

description: Studies in ecology, evolution, and conservation often rely on non-invasive
 samples, making it challenging to generate large amounts of high-quality
 genetic data for many elusive and at-risk species. We developed and
 optimized a Genotyping-in-Thousands by sequencing (GT-seq) panel using
 non-invasive samples to inform the management of invasive Sitka
 black-tailed deer (Odocoileus hemionus sitkensis) in Haida Gwaii (Canada).
 We validated our panel using paired high-quality tissue and non-invasive
 fecal and hair samples to simultaneously distinguish individuals, identify
 sex and reconstruct kinship among deer sampled across the archipelago,
 then provided a proof-of-concept application using field-collected feces
 on SGang Gwaay, an island of high ecological and cultural value.
 Genotyping success across 244 loci was high (90.3%) and comparable to that
 of high-quality tissue samples genotyped using restriction-site associated
 DNA sequencing (92.4%), while genotyping discordance between paired
 high-quality tissue and non-invasive samples was low (0.50%). The panel
 will be used to inform future invasive species operations (culls or
 eradications) in Haida Gwaii by providing individual and population
 information to inform management. More broadly, our GT-seq workflow that
 includes quality control analyses for targeted SNP selection and a
 modified protocol may be of wider utility for other studies and systems
 where non-invasive genetic sampling is employed.
description: Genotyping-in-Thousands by sequencing (GT-seq) following Campbell
 et al. (2015) <em>Molecular Ecology Resources</em> as modified
 in Schmidt et al. (2020) <em>Molecular Ecology Resources</em>
 and the associated work.
description: gtseq244_nis_genepop.txt: genepop file of genotypic
 data at 244 SNPs collected with GT-seq for non-invasive (fecal and hair)
 samples.   gtseq244_tissue_genepop.txt: genepop file of
 genotypic data at 244 SNPs collected with GT-seq for paired tissue
 samples.   radseq244_final.vcf: vcf file of genotypic data at
 244 SNPs collected with RAD-seq for tissue samples.   metadata.csv: text file containing individual
 metadata for all samples used including sample identifiers, location,
 year, and sample type.
DOI: 10.5061/dryad.0rxwdbs33
title: Transcriptional networks underlying a primary ovarian insufficiency disorder in alligators naturally exposed to EDCs: Transformed read counts and supplementary materials

description: Interactions between the endocrine system and environmental contaminants
 are responsible for impairing reproductive development and function.
 Despite the taxonomic diversity of affected species and attendant
 complexity inherent to natural systems, the underlying signaling pathways
 and cellular consequences are mostly studied in lab models. To resolve the
 genetic and endocrine pathways that mediate affected ovarian function in
 organisms exposed to endocrine disrupting contaminants in their natural
 environments, we assessed broad-scale transcriptional and steroidogenic
 responses to exogenous gonadotropin stimulation in juvenile alligators
 (Alligator missippiensis) originating from a lake with well-documented
 pollution (Lake Apopka, FL) and a nearby reference site (Lake Woodruff,
 FL). We found that individuals from Lake Apopka are charachterized by
 hyperandrogenism and display hyper-sensitive transcriptional responses to
 gonadotropin stimulation when compared to individuals from Lake Woodruff.
 Site-specific transcriptomic divergence appears to be driven by wholly
 distinct subsets of transcriptional regulators, indicating alterations to
 fundamental genetic pathways governing ovarian function. Consistent with
 broad-scale transcriptional differences, ovaries of Lake Apopka alligators
 displayed impediments to folliculogenesis, with larger germinal beds and
 decreased numbers of late-stage follicles. After resolving the ovarian
 transcriptome into clusters of co-expressed genes, most site-associated
 modules were correlated to ovarian follicule phenotypes across
 individuals. However, expression of two site-specific clusters were
 independent of ovarian cellular architecture and are hypothesized to
 represent alterations to cell-autonomous transcriptional programs.
 Collectively, our findings provide high resolution mapping of
 transcriptional patterns to specific reproductive function and advance our
 mechanistic understanding regarding impaired reproductive health in an
 established model of environmental endocrine disruption.
DOI: 10.5281/zenodo.18400351
title: LINF_320011400

description: Sec13/Seh1-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18400352
title: LINF_320011400

description: Sec13/Seh1-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.25338/b81062
title: Landscape genetics of an endangered salt marsh endemic: identifying population continuity and barriers to dispersal

description: Preserving the genetic diversity of endangered species is fundamental to
 their conservation and requires an understanding of genetic structure. In
 turn, identification of landscape features that impede gene flow can
 facilitate management to mitigate such obstacles and help with identifying
 isolated populations. We conducted a landscape genetic study of the
 endangered salt marsh harvest mouse (Reithrodontomys raviventris), a
 species endemic to the coastal marshes of the San Francisco Estuary of
 California. We collected and genotyped &gt;500 samples from across the
 marshes of Suisun Bay which contain the largest remaining tracts of
 habitat for the species. Cluster analyses and a population tree identified
 three geographically discrete populations. Next, we conducted landscape
 genetic analyses at two scales (the entire study area and across the
 Northern Marshes) where we tested 65 univariate models of landscape
 features and used the best supported to test multivariable analyses. Our
 analysis of the entire study area indicated that open water and elevation
 (&gt;2 m) constrained gene flow. Analysis of the Northern Marshes,
 where low elevation marsh habitat is more continuous, indicated that
 geographic distance was the only significant predictor of genetic distance
 at this scale. The identification of a large, connected population across
 Northern Marshes achieves a number of recovery targets for this stronghold
 of the species. The identification of landscape features that act as
 barriers to dispersal enables the identification of isolated and
 vulnerable populations more broadly across the species range, thus aiding
 conservation prioritization.
description: Fieldwork to collect samples followed genotyping with
 microsatellites.
DOI: 10.5061/dryad.cfxpnvx7m
title: Brood ball data from the dung beetle species Phanaeus vindex exposed to warmer temperatures

description: Temperature profoundly impacts insect development, but plasticity of
 reproductive behaviours may mediate the impacts of temperature change on
 earlier life stages. Few studies have examined the potential for adult
 behavioural plasticity to buffer offspring from the warmer, more variable
 temperatures associated with climate change. We used a field manipulation
 to examine whether the dung beetle Phanaeus vindex alters breeding
 behaviours in response to temperature changes and whether behavioural
 shifts protect offspring from temperature changes. Dung beetles lay eggs
 inside brood balls made of dung that are buried underground. Brood ball
 depth impacts the temperatures offspring experience with consequences for
 development. We placed adult females in either control or greenhouse
 treatments that simultaneously increased temperature mean and variance. We
 found that females in greenhouse treatments produced more brood balls that
 were smaller and buried deeper than controls, suggesting brood ball number
 or burial depth may come at a cost to brood ball size, which can impact
 offspring nutrition. Despite being buried deeper, brood balls from the
 greenhouse treatment experienced warmer mean temperatures but similar
 amplitudes of temperature fluctuation relative to controls. Our findings
 suggest adult behaviours may partially buffer developing offspring from
 temperature changes.
DOI: 10.5061/dryad.7sqv9s4v8
title: Pretest and posttest data for nurses' empathy and problem solving

description: Service design is an innovative tool to improve the quality of patient
 experience and, therefore, it is necessary to have nurses who can
 implement service design. The aim of this study was to implement a
 training program for patient experience-based nursing service design
 (PEN-SD) and examine the effects of the program on clinical nurses’
 compassion and problem-solving ability. This study employed mixed methods:
 a one-group, pretest-posttest design was used as the quantitative approach
 and structured interviews as the qualitative approach. Twenty-one nurses
 were recruited from a university hospital in Korea. A PEN-SD training
 program was conducted from September 1 to October 6, 2018. After the
 training program, the participants’ compassion significantly improved (p =
 .025) but there was no significant difference in terms of their
 problem-solving ability (p = .313). In the structured interviews, the
 participants’ most common response (n = 17) was that they were able to
 consider problems from the patient’s perspective. They also reported
 identifying solutions to problems through careful observation (n = 5).
 This research is an innovative attempt to introduce a service design in
 the nursing field. The PEN-SD training program was effective in improving
 compassion among nurses as a service development method to provide the
 best nursing services reflecting patients’ experiences.
description: This is pretest and posttest questionnaire data for empathy and
 problem-solving.
DOI: 10.5061/dryad.dv41ns217
title: Data from: Implementation of a pediatric telemedicine and medication delivery service in a resource-limited setting: A pilot study for clinical safety and feasibility

description: Objective: Determine the clinical safety and feasibility of implementing a
 telemedicine and medication delivery service (TMDS) to address gaps in
 nighttime healthcare access for children in low-resource settings.
 Results: A total of 391 cases were enrolled from September 9th, 2019 to
 January 19th, 2021; 89% (347) received a household visit. Most cases were
 triaged as mild or moderate (92%; 361). Among the severe cases, 83% (20)
 sought subsequent referred care. The most common complaint was a
 respiratory problem (63%; 246). At 10-days, 95% (329) of parents reported
 their child’s condition as “improved” or “recovered”. Ninety-nine percent
 (344) rated the TMDS as “good” or “great”. The median phone consultation
 was 20 minutes, time to arrival at the household was 73 minutes and total
 workflow per case was 114 minutes. Conclusion: The TMDS was a feasible
 healthcare delivery model with high rates of improved clinical status at
 10-days.
description: We conducted 391 virtual exams on children ≤10 yrs with the
 MotoMeds telemedicine and medication delivery service in Gressier Haiti
 and 341 of these cases received a paired in-person exam at their home
 following the virtual exam. Data pertaining to the call center and
 houshold exams as well as operational metrics and user feedback data were
 collected by Haitian nurses at the MotoMeds call center and during
 household visits in the surrounding study area. The data were originally
 recorded on paper case report (CRF) forms and then entered into REDCap by
 a Haitian study coordinator. Two independent physicians conducted chart
 reviews to evaluate guideline adherence. They entered the case review data
 directly into REDCap. Seventy-four nasal swabs were collected from
 participants with respiratory complaints or fever and analyzed using
 BioFire COVID-19 Test v1.0 or BioFire Respiratory Panel 2.1. The
 laboratory results were entered into REDCap by the Haitian study
 coordinator. The raw data set was reduced to the most relevant variables
 to answer our research questions and dates, times, names, GPS coordinates,
 and phone numbers were removed and case IDs were scrambled.
description: Each row of the INACT2_Data_5.9.22 file corresponds to a case.
 The list of variables and corresponding codes are provided in the
 README_INACT2_Data.txt file.
DOI: 10.5061/dryad.ghx3ffbrf
title: Data from: Dominant carnivore loss benefits native avian and invasive mammalian scavengers

description: Scavenging by large carnivores is integral for ecosystem functioning by
 limiting the build-up of carrion and facilitating widespread energy flows.
 However, top carnivores have declined across the world, triggering trophic
 shifts within ecosystems. In this study, we use a natural ‘removal
 experiment’ of disease-driven decline and island extirpation of native
 mammalian (marsupial) carnivores to investigate top-down control on
 utilisation of experimentally placed carcasses by two mesoscavengers – the
 invasive feral cat and native forest raven. Ravens were the main
 beneficiary of carnivore loss, scavenging for five times longer in the
 absence of native mammalian carnivores. Cats scavenged on half of all
 carcasses in the region without dominant native carnivores. This was eight
 times more than in areas where other carnivores were at high densities.
 All carcasses persisted longer than the three-week monitoring period in
 the absence of native mammalian carnivores, while in areas with high
 carnivore abundance, all carcasses were fully consumed. Our results reveal
 the efficiency of carrion consumption by mammalian scavengers. These
 services are not readily replaced by less-efficient facultative
 scavengers. Overall, our results demonstrate the significance of global
 carnivore conservation and support management approaches, such as
 rewilding in areas where the natural suite of carnivores is missing.
DOI: 10.5061/dryad.9cnp5hqmb
title: GARD 1.7 - updated global distributions for all terrestrial reptiles

description: This is the updated version of the Global Assessment of Reptile
 Distributions (GARD; http://www.gardinitiative.org/) global distributions
 of all (10914 species) of terrestrial reptiles. Ranges are given in a
 polygonal shapefile format collated from various sources and had expert
 validation and curation.
description: See Roll et al. 2017 Nature Ecology &
 Evolution 1:1677–1682 supplement for detailed
 methods. https://static-content.springer.com/esm/art%3A10.1038%2Fs41559-017-0332-2/MediaObjects/41559_2017_332_MOESM1_ESM.pdf
description: When using this data set please
 cite Roll et al. 2017 Nature Ecology &
 Evolution 1:1677–1682 & Caetano et al. 2022 PLoS
 Biology