cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25592/uhhfdm.18244
title: Supporting Information for the StrAcTable publication

description: All supporting data files for the StrAcTable publication and the StrAcTable datasets are given here.

Following is a short description of each file:<br>
parsed_ligand_data.csv - parsed data of LigandExtactor<br>
parsed_structuere_data.csv - parsed data of StructureProfiler<br>
parsed_activity_data_raw.csv - parsed activity data of ActivityFinder (activity mode)<br>
active_site_data.csv - parsed active site mutation data of ActivityFinder (activity mode)<br>
parsed_activity_data_raw_enriched.csv - parsed activity data of ActivityFinder with additional annotated data (activtiy mode)<br>
filtered_activites.csv - filtered version of parsed_activity_data_raw_enriched (activity mode)<br>
chembl_target_dict_activities.json - json of all chembl targets for each entry (activity mode)<br>
refined_active_site_data.json - refined active site data for each entry (activity mode)<br>
discarded_target_data_automated_activities.csv - target filtering cascade results (activity mode)<br>
parsed_target_data_raw - parsed activity data of ActivityFinder (target mode)<br>
parsed_target_data_enriched_raw.csv - parsed activity data of ActivityFinder with additional annotated data (target mode)<br>
parsed_target_data_filtered.csv - filtered version of parsed_target_data_enriched_raw (target mode)<br>
StrAcTable.csv - merge of ligand data, structure data and enriched activity data (activity mode)<br>
StrAcTable_filtered.csv - merge of ligand data, structure data and filtered activity data (activity mode)<br>
StrAcTableT.csv - merge of ligand data, structure data and enriched activity data (target mode)<br>
StrAcTableT_filtered.csv - merge of ligand data, structure data and filtered activity data (target mode)<br>
StrAcTable_comments.json - csvw explanation for all columns in StrAcTable<br>
Sunburst_plot_pdb.html - sunburst plot of the target hierarchy for all pdb entries in StrAcTable

For further details please consult the publication.
DOI: 10.25592/uhhfdm.18243
title: Supporting Information for the StrAcTable publication

description: All supporting data files for the StrAcTable publication and the StrAcTable datasets are given here.

Following is a short description of each file:<br>
parsed_ligand_data.csv - parsed data of LigandExtactor<br>
parsed_structuere_data.csv - parsed data of StructureProfiler<br>
parsed_activity_data_raw.csv - parsed activity data of ActivityFinder (activity mode)<br>
active_site_data.csv - parsed active site mutation data of ActivityFinder (activity mode)<br>
parsed_activity_data_raw_enriched.csv - parsed activity data of ActivityFinder with additional annotated data (activtiy mode)<br>
filtered_activites.csv - filtered version of parsed_activity_data_raw_enriched (activity mode)<br>
chembl_target_dict_activities.json - json of all chembl targets for each entry (activity mode)<br>
refined_active_site_data.json - refined active site data for each entry (activity mode)<br>
discarded_target_data_automated_activities.csv - target filtering cascade results (activity mode)<br>
parsed_target_data_raw - parsed activity data of ActivityFinder (target mode)<br>
parsed_target_data_enriched_raw.csv - parsed activity data of ActivityFinder with additional annotated data (target mode)<br>
parsed_target_data_filtered.csv - filtered version of parsed_target_data_enriched_raw (target mode)<br>
StrAcTable.csv - merge of ligand data, structure data and enriched activity data (activity mode)<br>
StrAcTable_filtered.csv - merge of ligand data, structure data and filtered activity data (activity mode)<br>
StrAcTableT.csv - merge of ligand data, structure data and enriched activity data (target mode)<br>
StrAcTableT_filtered.csv - merge of ligand data, structure data and filtered activity data (target mode)<br>
StrAcTable_comments.json - csvw explanation for all columns in StrAcTable<br>
Sunburst_plot_pdb.html - sunburst plot of the target hierarchy for all pdb entries in StrAcTable

For further details please consult the publication.
DOI: 10.5281/zenodo.18265580
title: In-Depth Study of Degradation in Scalable Wide Bandgap Perovskite Cells

description: Data supporting the findings in the article "In-Depth Study of Degradation in Scalable Wide Bandgap Perovskite Cells" available at https://dx.doi.org/10.1088/2752-5724/ae01c1
DOI: 10.15468/dl.sntchb
title: Occurrence Download

description: A dataset containing 937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Pyropia suborbiculata, Porphyra suborbiculata)"
 ]
}

 The dataset includes 937 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013535-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pn4mtt
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eurya pittosporifolia"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013534-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17017996
title: In-Depth Study of Degradation in Scalable Wide Bandgap Perovskite Cells

description: Data supporting the findings in the article "In-Depth Study of Degradation in Scalable Wide Bandgap Perovskite Cells"
DOI: 10.5281/zenodo.17017995
title: In-Depth Study of Degradation in Scalable Wide Bandgap Perovskite Cells

description: Data supporting the findings in the article "In-Depth Study of Degradation in Scalable Wide Bandgap Perovskite Cells" available at https://dx.doi.org/10.1088/2752-5724/ae01c1
DOI: 10.15468/dl.9uv7me
title: Occurrence Download

description: A dataset containing 21650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia verbenaca",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21650 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013536-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yedkpm
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Populus davidiana",
 "Year 1970-2000"
 ]
}

 The dataset includes 149 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013537-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16542374
title: KU-Optofil PBC: KU-Optofil Peripheral Blood Cell Dataset
DOI: 10.5281/zenodo.17333317
title: KU-Optofil PBC: KU-Optofil Peripheral Blood Cell Dataset
DOI: 10.15468/dl.r6c2cy
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eurya pseudocerasifera"
 ]
}

 The dataset includes 161 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013539-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bjegkb
title: Occurrence Download

description: A dataset containing 35818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sarcophilus harrisii",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35818 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013538-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erfhqj
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Primula gemmifera Batalin"
 ]
}

 The dataset includes 187 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012257-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3e8bz
title: Occurrence Download

description: A dataset containing 12499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma opacum (Gravenhorst, 1807))"
 ]
}

 The dataset includes 12499 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002818-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8a28py
title: Occurrence Download

description: A dataset containing 306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "TaxonKey is Paracerceis sculpta (Holmes, 1904)",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 306 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002817-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48420/29074760
title: Appendix Worksheets: Multi-Omics Analysis of Tissue Taphonomy for Forensics and Bioarchaeological Applications

description: Excel Workbook Containing Appendix Worksheets for PhD Thesis:<br><b><i>Appendix Sheets 3.1: Recovery of Decomposed Pig Leg Metabolite Peak IDs using MultiQuant and MS-DIAL software</i></b>Metabolites were extracted from both skin and muscle layers of a pig leg over seven timepoints, from initial zero hour (0HR) to of a 42 days (42D), and ran on a SCIEX 6600 TripleTOF Q-TOF mass spectrometer. Data acquired using SWATH-DIA were processed using both commercial (SCIEX’s MulitQuant 3.0.2, ins. ref ) and open-source (MS-DIAL 4.9) software. Peaks from MS1 and MS2 were matched against a metabolite library of 235 standards in MultiQuant and scored using a custom VBA macro (a). MS2 (b) and MS1 (c) peaks were processed independently after MS-DIAL, with sorting and filtering based on identification scores. In all cases, green results show a high confidence of identification, yellow a lower confidence and red indicates missing IDs.<b><i>Appendix Sheets 3.2: Unique Compounds Recovered from Decomposed Pig Leg Lipids identified through Progenesis software from Mass Spectrometry ran in Positive (a) and Negative Mode (b)</i></b><b><i>Appendix Sheet 4.1 Observations during Modelling and Extraction of Decomposing Porcine Leg Skeletal Muscle (MU) and Skin (SK) </i></b><b><i>Appendix Sheet 4.2 Protein Mass Spectrometry Sample Digestion and Manifest </i></b><b><i>Appendix Sheet 4.3 DNA Purification</i></b><br><br>
DOI: 10.15468/dl.a758m9
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "TaxonKey is Otus elegans (Cassin, 1852)"
 ]
}

 The dataset includes 115 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011662-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8ugkm
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tetramorium spinosum"
 ]
}

 The dataset includes 424 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040534-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dakjf4
title: Occurrence Download

description: A dataset containing 586930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((130.7988 29.28011,128.8629 28.93077,123.09886 24.54952,123.40453 23.35596,124.40887 23.23952,127.87312 24.95708,129.56157 26.87843,130.7988 29.28011))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 586930 records from 720 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040492-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.usteje
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trachymyrmex saussurei"
 ]
}

 The dataset includes 63 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040536-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2djuec
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-105.7188 21.14913, -105.5688 21.14913, -105.5688 21.29913, -105.7188 21.29913, -105.7188 21.14913))"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040537-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5jq9f
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Panthera onca",
 "Year 1965-2015"
 ]
}

 The dataset includes 437 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040538-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kq9f5a
title: Occurrence Download

description: A dataset containing 332208 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 44862593-2fdd-4491-ab79-b500b8272aac",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 332208 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040527-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7my9q7
title: Occurrence Download

description: A dataset containing 1366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Living Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Digitaria, Digitaria, Digitaria, Digitaria)"
 ]
}

 The dataset includes 1366 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040540-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtnfqq
title: Occurrence Download

description: A dataset containing 22128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((111.87939 -35.68927,126.33084 -35.68927,126.33084 -19.4598,111.87939 -19.4598,111.87939 -35.68927))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zanda latirostris"
 ]
}

 The dataset includes 22128 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040541-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17613832
title: MitoEM 2.0: A Benchmark for Challenging 3D Mitochondria Instance Segmentation from EM Images

description: MitoEM 2.0 is a curated collection of eight high-difficulty 3D mitochondria instance segmentation datasets acquired using multiple volume electron microscopy (vEM) modalities, including FIB-SEM, ssSEM, and SBF-SEM. The benchmark targets biologically complex scenarios such as dense mitochondrial packing, hyperfused networks, thin-necked morphologies, and ultrastructurally ambiguous boundaries. All datasets include native-resolution volumes, expert-verified instance labels, standardized nnU-Net–compatible file structures, machine-readable descriptors (dataset.json, splits.json), and unified metadata (metadata.csv). Difficulty quantification is provided via the Dilation Collision Index (DCI) and Erosion Fragility Index (EFI). This release supports reproducible benchmarking, model development, and reuse across bioimage analysis, algorithm evaluation, and teaching.
DOI: 10.5281/zenodo.17635006
title: MitoEM 2.0: A Benchmark for Challenging 3D Mitochondria Instance Segmentation from EM Images

description: MitoEM 2.0 is a curated collection of eight high-difficulty 3D mitochondria instance segmentation datasets acquired using multiple volume electron microscopy (vEM) modalities, including FIB-SEM, ssSEM, and SBF-SEM. The benchmark targets biologically complex scenarios such as dense mitochondrial packing, hyperfused networks, thin-necked morphologies, and ultrastructurally ambiguous boundaries. All datasets include native-resolution volumes, expert-verified instance labels, standardized nnU-Net–compatible file structures, machine-readable descriptors (dataset.json, splits.json), and unified metadata (metadata.csv). Difficulty quantification is provided via the Dilation Collision Index (DCI) and Erosion Fragility Index (EFI). This release supports reproducible benchmarking, model development, and reuse across bioimage analysis, algorithm evaluation, and teaching.
DOI: 10.5281/zenodo.17636499
title: data
DOI: 10.5281/zenodo.17636500
title: data
DOI: 10.15468/dl.9z88hh
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-105.5688 21.14913, -105.4188 21.14913, -105.4188 21.29913, -105.5688 21.29913, -105.5688 21.14913))"
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040542-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57783/1e6x-qs82
title: LibreChat-TEST
DOI: 10.6084/m9.figshare.30578282
title: Unveiling a photograph: cemile, state violence, and death

description: <i>This article interprets a news photograph from southeastern Turkey that documents state-perpetrated violence against Kurds. There are two primary reasons for selecting this photograph for analysis. First, it embodies necropolitical violence against Kurds rarely visible in the Turkish public sphere. Second, it obscures its intended message, unlike typical news photography. However, the subject of the photograph demands visibility, and its peculiarities open the door for productive theoretical discussions. The aim of this article is to make this implicit photograph visible without exceeding the ethical boundaries of the image itself and to contribute to its visibility in the public sphere. In this regard, the methodological framework of the paper is primarily informed by Ariella Azoulay’s contemporary discussions on photography. The analysis employs her concepts of</i> the photographed event <i>and</i> the event of photography, <i>which effectively overcome the limitations of early photographic theories, such as those of Sontag. These two concepts expand the definition and spatio-temporal existence of photography, facilitating an exploration of the implicit redundancy within the photograph. Additionally, Barbie Zelizer’s notion of the subjunctive voice is applied to address the silence within the image and to create a space and a voice for the photograph within Turkey’s civil-political discourse.</i>
DOI: 10.6084/m9.figshare.30578282.v1
title: Unveiling a photograph: cemile, state violence, and death

description: <i>This article interprets a news photograph from southeastern Turkey that documents state-perpetrated violence against Kurds. There are two primary reasons for selecting this photograph for analysis. First, it embodies necropolitical violence against Kurds rarely visible in the Turkish public sphere. Second, it obscures its intended message, unlike typical news photography. However, the subject of the photograph demands visibility, and its peculiarities open the door for productive theoretical discussions. The aim of this article is to make this implicit photograph visible without exceeding the ethical boundaries of the image itself and to contribute to its visibility in the public sphere. In this regard, the methodological framework of the paper is primarily informed by Ariella Azoulay’s contemporary discussions on photography. The analysis employs her concepts of</i> the photographed event <i>and</i> the event of photography, <i>which effectively overcome the limitations of early photographic theories, such as those of Sontag. These two concepts expand the definition and spatio-temporal existence of photography, facilitating an exploration of the implicit redundancy within the photograph. Additionally, Barbie Zelizer’s notion of the subjunctive voice is applied to address the silence within the image and to create a space and a voice for the photograph within Turkey’s civil-political discourse.</i>
DOI: 10.15468/dl.tbkjeu
title: Occurrence Download

description: A dataset containing 816198 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is null",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
 },
 {
 "not" : {
 "DatasetKey" : [
 "is EBCC Atlas of European Breeding Birds"
 ]
 }
 },
 {
 "not" : {
 "DatasetKey" : [
 "is (Table 3) Relative abundance of Azolla spp., peridinoid dinocysts, gonyaulacoid dinocysts, non-saccate pollen, bisaccate pollen and spores from the Lomonosov Ridge during different Arctic coring expeditions"
 ]
 }
 }
 ]
}

 The dataset includes 816198 records from 829 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040475-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.82261/w7rx-jg06
title: Aeneas