cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26987392
title: Additional file 5 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 5. List of candidate genes horizontally transferred specifically from bacteria to D. papillatum or to the common ancestor of diplonemids. See also Additional file 1: Section 15. Genes horizontally transferred from bacteria to Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987428.v1
title: Additional file 3 of DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis

description: Additional file 3: Supplementary data 2. Selected 133 hub-like genes for subnetwork model in Additional file 1: Fig. S7.
DOI: 10.6084/m9.figshare.26987425
title: Additional file 2 of DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis

description: Additional file 2: Supplementary data 1. Number of interrogated genes and DNA methylation regions for the analyses in Figs. 2 to 6 and Additional file 1: Fig. S6.
DOI: 10.6084/m9.figshare.26987425.v1
title: Additional file 2 of DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis

description: Additional file 2: Supplementary data 1. Number of interrogated genes and DNA methylation regions for the analyses in Figs. 2 to 6 and Additional file 1: Fig. S6.
DOI: 10.6084/m9.figshare.26987428
title: Additional file 3 of DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis

description: Additional file 3: Supplementary data 2. Selected 133 hub-like genes for subnetwork model in Additional file 1: Fig. S7.
DOI: 10.6084/m9.figshare.26987434
title: Additional file 4 of DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis

description: Additional file 4: Table S1. Primers used for RT-qPCR and ChIP-qPCR.
DOI: 10.6084/m9.figshare.26987434.v1
title: Additional file 4 of DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis

description: Additional file 4: Table S1. Primers used for RT-qPCR and ChIP-qPCR.
DOI: 10.6084/m9.figshare.26987449
title: Additional file 2 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 2: Table S1. Raw counts per gene for all gonadal transcriptomes obtained with RNA-seq.
DOI: 10.6084/m9.figshare.26987449.v1
title: Additional file 2 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 2: Table S1. Raw counts per gene for all gonadal transcriptomes obtained with RNA-seq.
DOI: 10.6084/m9.figshare.26987455.v1
title: Additional file 3 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 3: Table S2. Results of a differential gene expression analysis of ZW versus ZZ for each stage.
DOI: 10.6084/m9.figshare.26987455
title: Additional file 3 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 3: Table S2. Results of a differential gene expression analysis of ZW versus ZZ for each stage.
DOI: 10.6084/m9.figshare.26987461
title: Additional file 4 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 4 Table S3. Relevant genes in gonad development, especially transcription factors.
DOI: 10.6084/m9.figshare.26987461.v1
title: Additional file 4 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 4 Table S3. Relevant genes in gonad development, especially transcription factors.
DOI: 10.6084/m9.figshare.26987464
title: Additional file 5 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 5 Table S4. Expression of genes involved in WNT signalling.
DOI: 10.6084/m9.figshare.26987464.v1
title: Additional file 5 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 5 Table S4. Expression of genes involved in WNT signalling.
DOI: 10.6084/m9.figshare.26987467
title: Additional file 6 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 6 Table S5. Dimorphic expressed genes throughout all three examined embryonic stages.
DOI: 10.6084/m9.figshare.26987473
title: Additional file 7 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 7 Table S6. Expression of genes involved in chromatin remodelling.
DOI: 10.6084/m9.figshare.26987473.v1
title: Additional file 7 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 7 Table S6. Expression of genes involved in chromatin remodelling.
DOI: 10.6084/m9.figshare.26987467.v1
title: Additional file 6 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 6 Table S5. Dimorphic expressed genes throughout all three examined embryonic stages.
DOI: 10.6084/m9.figshare.26987476
title: Additional file 8 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 8: Table S7. Modules of genes resulting from a weighted correlation network analysis.
DOI: 10.6084/m9.figshare.26987476.v1
title: Additional file 8 of Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

description: Additional file 8: Table S7. Modules of genes resulting from a weighted correlation network analysis.
DOI: 10.6084/m9.figshare.26987380
title: Additional file 2 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 2. Curated list of high-confidence nuclear mitochondrial segments (NUMTs) that can be anchored to non-repetitive, coding sequences of the mitochondrial genome. See also Additional file 1: Section 6. Repetitive sequences in the nuclear genome of Diplonema papillatum (assembly v_1.0).
DOI: 10.6084/m9.figshare.26987380.v1
title: Additional file 2 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 2. Curated list of high-confidence nuclear mitochondrial segments (NUMTs) that can be anchored to non-repetitive, coding sequences of the mitochondrial genome. See also Additional file 1: Section 6. Repetitive sequences in the nuclear genome of Diplonema papillatum (assembly v_1.0).
DOI: 10.6084/m9.figshare.26987383
title: Additional file 3 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 3. Gene count and orientation across contigs of the v1.0 assembly. Columns labelled ‘Submitted genome annotation’ show the data for the final assembly and annotation as submitted to NCBI GenBank. For the three longest contigs, we provide the corresponding information after expert curation and masking of genes derived from transposons (columns labelled ‘Fully curated genome annotation and masked transposons’). See also Additional file 1: Section 7. Polycistronic transcription units in the nuclear genome of Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987383.v1
title: Additional file 3 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 3. Gene count and orientation across contigs of the v1.0 assembly. Columns labelled ‘Submitted genome annotation’ show the data for the final assembly and annotation as submitted to NCBI GenBank. For the three longest contigs, we provide the corresponding information after expert curation and masking of genes derived from transposons (columns labelled ‘Fully curated genome annotation and masked transposons’). See also Additional file 1: Section 7. Polycistronic transcription units in the nuclear genome of Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987389
title: Additional file 4 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 4. List of genes coding for carbohydrate-interacting proteins. A) CAZyme genes detected in D. papillatum. B) CAZyme genes detected in D. japonicum. See also Additional file 1: Section 12. CAZyme-coding genes in Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987389.v1
title: Additional file 4 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 4. List of genes coding for carbohydrate-interacting proteins. A) CAZyme genes detected in D. papillatum. B) CAZyme genes detected in D. japonicum. See also Additional file 1: Section 12. CAZyme-coding genes in Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987392.v1
title: Additional file 5 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 5. List of candidate genes horizontally transferred specifically from bacteria to D. papillatum or to the common ancestor of diplonemids. See also Additional file 1: Section 15. Genes horizontally transferred from bacteria to Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987398
title: Additional file 6 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 6. Detailed information on the evolution of gene families in diplonemids. A) Summary of gene-family gain/loss/expansion/contraction events. B) Diplonemid-specific gene-family gain events. Gene families gained on the ancestral diplonemid branch. C) Diplonemid-specific gene-family loss events. D) Diplonemid-specific gene-family expansion events. E) Diplonemid-specific gene-family contraction events. F) D. papillatum-specific gene-family gain events. Gene families gained on the ancestral diplonemid branch (posterior probability ≥0.5). G) D. papillatum-specific gene-family loss events. H) D. papillatum-specific gene-family expansion events. I) D. papillatum-specific gene-family contraction events. See also Additional file 1: Section 16. Evolution of gene families.
DOI: 10.6084/m9.figshare.26987401
title: Additional file 7 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 7. List of samples from various locations of the world ocean investigated for the presence of D. papillatum. See also Additional file 1: Section 18. Environmental distribution of Diplonema papillatum.
DOI: 10.15468/dl.a9av7s
title: Occurrence Download

description: A dataset containing 2380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Ficus lutea Vahl",
 "Continent is Africa"
 ]
}

 The dataset includes 2380 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011653-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26987398.v1
title: Additional file 6 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 6. Detailed information on the evolution of gene families in diplonemids. A) Summary of gene-family gain/loss/expansion/contraction events. B) Diplonemid-specific gene-family gain events. Gene families gained on the ancestral diplonemid branch. C) Diplonemid-specific gene-family loss events. D) Diplonemid-specific gene-family expansion events. E) Diplonemid-specific gene-family contraction events. F) D. papillatum-specific gene-family gain events. Gene families gained on the ancestral diplonemid branch (posterior probability ≥0.5). G) D. papillatum-specific gene-family loss events. H) D. papillatum-specific gene-family expansion events. I) D. papillatum-specific gene-family contraction events. See also Additional file 1: Section 16. Evolution of gene families.
DOI: 10.6084/m9.figshare.26987401.v1
title: Additional file 7 of Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes

description: Additional file 7. List of samples from various locations of the world ocean investigated for the presence of D. papillatum. See also Additional file 1: Section 18. Environmental distribution of Diplonema papillatum.
DOI: 10.6084/m9.figshare.26987542
title: Additional file 1 of Estimating transcriptome complexities across eukaryotes

description: Additional file 1.
DOI: 10.6084/m9.figshare.26987542.v1
title: Additional file 1 of Estimating transcriptome complexities across eukaryotes

description: Additional file 1.
DOI: 10.6084/m9.figshare.26987599
title: Additional file 1 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 1. Table S1. Inhibition of cell viability.
DOI: 10.6084/m9.figshare.26987599.v1
title: Additional file 1 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 1. Table S1. Inhibition of cell viability.
DOI: 10.6084/m9.figshare.26987605
title: Additional file 3 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 3. Table S2. Differentially expressed genes and miRNAs following drug treatment.
DOI: 10.6084/m9.figshare.26987605.v1
title: Additional file 3 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 3. Table S2. Differentially expressed genes and miRNAs following drug treatment.
DOI: 10.6084/m9.figshare.26987608
title: Additional file 4 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 4. Table S3. Induced expression of apoptosis-related genes.
DOI: 10.6084/m9.figshare.26987608.v1
title: Additional file 4 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 4. Table S3. Induced expression of apoptosis-related genes.
DOI: 10.6084/m9.figshare.26987614
title: Additional file 6 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 6. Table S4.1. The chromosomal distribution of drug responsive DEGs.
DOI: 10.6084/m9.figshare.26987614.v1
title: Additional file 6 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 6. Table S4.1. The chromosomal distribution of drug responsive DEGs.
DOI: 10.6084/m9.figshare.26987617
title: Additional file 7 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 7. Table S5.1. CpG islands information in promoters of decitabine responsive genes. Table S5.2. CpG islands information in promoters of decitabine and PBA responsive genes.
DOI: 10.6084/m9.figshare.26987617.v1
title: Additional file 7 of Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas

description: Additional file 7. Table S5.1. CpG islands information in promoters of decitabine responsive genes. Table S5.2. CpG islands information in promoters of decitabine and PBA responsive genes.
DOI: 10.15468/dl.zyavnt
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Ficus mucuso Welw. ex Ficalho",
 "Continent is Africa"
 ]
}

 The dataset includes 662 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011654-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26987692
title: Additional file 6 of Pathological hemodynamic changes and leukocyte transmigration disrupt the blood–spinal cord barrier after spinal cord injury

description: Additional file 6. Statistical test results.
DOI: 10.6084/m9.figshare.26987704.v1
title: Additional file 1 of Genomic hallmarks and therapeutic implications of G0 cell cycle arrest in cancer

description: Additional file 1: Table S1. The 139-gene signature of G0 arrest. The up- or downregulation status in G0 arrest is indicated for each gene. Table S2. Summary of external G0 arrest score validation datasets. Table S3. Summary of external cancer cell line treatment response data. Table S4. Results of the signature optimisation analysis.
DOI: 10.15468/dl.pbffvu
title: Occurrence Download

description: A dataset containing 1585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Ficus natalensis Hochst.",
 "Continent is Africa"
 ]
}

 The dataset includes 1585 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011655-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/srn5mj
title: 171205_1441.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/2uvrdp
title: 170124_1047_subjects_intermediate.tab

description: Reconstructed zTree output for the first pilot
DOI: 10.57745/knstl9
title: 171011_1111.xls

description: zTree Output for one session
DOI: 10.57745/nsnja8
title: task_results_gains_180410_1352.xlsx

description: Results of the subjects in the tasks for one session.
DOI: 10.6084/m9.figshare.26987704
title: Additional file 1 of Genomic hallmarks and therapeutic implications of G0 cell cycle arrest in cancer

description: Additional file 1: Table S1. The 139-gene signature of G0 arrest. The up- or downregulation status in G0 arrest is indicated for each gene. Table S2. Summary of external G0 arrest score validation datasets. Table S3. Summary of external cancer cell line treatment response data. Table S4. Results of the signature optimisation analysis.
DOI: 10.57745/1zqdm5
title: 180410_1514.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/3skrih
title: 171011_1111.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/80zuh8
title: 171114_1538.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/nt31ha
title: 171205_1609.xls

description: zTree Output for one session
DOI: 10.57745/ynzony
title: task_results_gains_180529_1415.xlsx

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/2bpia5
title: task_results_gains_171212_1115.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/hjq1pj
title: task_results_gains_180410_1514.xlsx

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/lshlb9
title: 171205_1441.xls

description: zTree Output for one session
DOI: 10.57745/ppeiub
title: task_results_gains_171011_1111.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/ttlc2b
title: task_results_gains_171114_1538.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/gjjbge
title: task_results_gains_170526_16h.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/w4zp4q
title: 180410_1514.xls

description: zTree Output for one session
DOI: 10.57745/z5ve0k
title: 171205_1308.xls

description: zTree Output for one session
DOI: 10.57745/goz7hz
title: 171205_1110.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/5hdunb
title: 171212_1741.xls

description: zTree Output for one session
DOI: 10.57745/rjpmks
title: 171212_1741.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/kllpht
title: 170502_1108.xls

description: zTree Output for one session
DOI: 10.57745/o1yupc
title: 180529_1415.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/gj2sdv
title: task_results_gains_171212_1436_corrected.xlsx

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/gts9cm
title: 171212_1332.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/aipu0g
title: 180410_1352.xls

description: zTree Output for one session
DOI: 10.57745/g8jgeg
title: task_results_gains_171212_1609.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/lwkwjr
title: task_results_gains_170502_1108.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/yxixhj
title: 171212_1436.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/z7uswo
title: 171212_1115.xls

description: zTree Output for one session
DOI: 10.6084/m9.figshare.26987692.v1
title: Additional file 6 of Pathological hemodynamic changes and leukocyte transmigration disrupt the blood–spinal cord barrier after spinal cord injury

description: Additional file 6. Statistical test results.
DOI: 10.57745/c3r0m6
title: task_results_gains_171205_1609.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/iwp3mq
title: task_results_gains_171205_1308.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/sifd9t
title: 171212_1332.xls

description: zTree Output for one session
DOI: 10.57745/aeeflp
title: 170526_1550.xls

description: zTree Output for one session
DOI: 10.57745/lttbs2
title: task_results_gains_171212_1332.tab

description: Results of the subjects in the tasks for one session.
DOI: 10.57745/r9qrm0
title: 171212_1115.sbj

description: File containing subjects identifiers for one session.
DOI: 10.57745/rehrcy
title: 171205_1110.xls

description: zTree Output for one session