cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/b9nm452g7h.1
title: Model & data for CDN article: Designing culturally acceptable, nutritious and low environmental impact Finnish diets with mycoprotein: a novel optimization approach

description: The model is designed for optimizing populational level diets with novel meat alternatives. Specifically, the model minimizes the weighted distance from the current diet (objective function), with meat alternative introduced as a new food within the meat group. We provide the R scripts and datasets to illustrate the operation of the model, the example results show the optimized Finnish diet with mycoprotein. You can easily adapt the model for your own research.

The R scripts for two models with different objective functional forms (quadratic & piecewise-linear) and scenarios: 
1. "CDN_female_QPsd_NUTR_GHGE" R scirpt: quadratic form of objective function, can simulate for an average female of: 
 (1) Nutritionally adequate diet (“NUTR” diet) – results stored in “RESULT1_female_QP_NUTR_myco.xlsx”
 (2) NUTR+GHGE-% diet (% of GHGE reduced diet, with meat fixed at NUTR diet) - results stored in “RESULT2_female_QP_NUTR+GHGE_myco.xlsx”

2. "CDN_male_LPsd_NUTR_loop_GHGE" R script: piecewise-linear form of objective function, can simulate for an average male of: 
 (1) Nutritionally adequate diet (“NUTR” diet) – results stored in “RESULT1_male_LP_NUTR_myco.xlsx”
 (2) NUTR + [1-50%] stepwise GHGE reduced diets (with meat fixed at NUTR scenario) – results stored in “RESULT2_male_LP_NUTR+GHGEloop_myco.xlsx”

Three excel datasets are provided to run the model (the same data used in the article): 
1. “INPUT_female_all_data_R_2025” for the first R script
2. “INPUT_male_all_data_R_2025” for the second R script
3. “INPUT_mycoprotein_data_R_2025” for both R scripts

The results generated in excel sheet includes: average intake (by food category and food group), cost of diets (by food category), GHGE of diets (by food category), nutrient intake of diets.

citation to the original article is recommended.
DOI: 10.22002/b0fxj-nhh87
title: 1ug chloramphenicol

description: Raw data files of 1ug chloramphenicol
description: <strong>Tilt Series Date:</strong> 2013-12-11</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  psa2013-12-11-21_slicer4136.jpg: Granules psa2013-12-11-21_slicer4139.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-12-11-21/rawdata/</p>atlas20010.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-12-11-21/rawdata/atlas20010.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20010_part121_8.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-12-11-21/3dimage_35977/atlas20010_part121_8.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/y4wfcdnt5c
title: Unveiling the Trophic Dynamics and Ecological Roles of Demersal Fish in Hong Kong: A Metabarcoding and Isotope Analysis Approach

description: These datasets contain the stable carbon and nitrogen isotope values obtained from stable isotope analysis and sequences obtained from gut content analysis of 16 demersal fish species in Hong Kong (n=75). It comprises high-quality COI and 12S primers sequencing data, with forward reads labeled as XXX_1.fq and reverse reads as XXX_2.fq. The file names correspond to the species name of each individual fish, as described in the manuscript.
DOI: 10.17632/y4wfcdnt5c.2
title: Unveiling the Trophic Dynamics and Ecological Roles of Demersal Fish in Hong Kong: A Metabarcoding and Isotope Analysis Approach

description: These datasets contain the stable carbon and nitrogen isotope values obtained from stable isotope analysis and sequences obtained from gut content analysis of 16 demersal fish species in Hong Kong (n=75). It comprises high-quality COI and 12S primers sequencing data, with forward reads labeled as XXX_1.fq and reverse reads as XXX_2.fq. The file names correspond to the species name of each individual fish, as described in the manuscript.
DOI: 10.22002/8pywh-rch89
title: V. harveyi LuxQ OE

description: Vibrio harveyi strain BB120 + pFED368 (LuxQ overexpression)
description: <strong>Tilt Series Date:</strong> 2014-04-11</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio harveyi</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Nicola Lorenz</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-16/rawdata/</p>VibrioharveyiOEApril0018.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-16/rawdata/VibrioharveyiOEApril0018.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibrioharveyiOEApril0018_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-16/3dimage_41330/VibrioharveyiOEApril0018_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/16a95-fty24
title: PEG 4E

description: CF Tar 4E receptors, no membrane, PEG
description: <strong>Tilt Series Date:</strong> 2013-11-12</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lynmarie Thompson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-11-12-19/rawdata/</p>PEG4Enew0005.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-11-12-19/rawdata/PEG4Enew0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        PEG4Enew0005_part121_39.rec,  Reconstruction (Pixel Size 2.24 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-11-12-19/3dimage_34298/PEG4Enew0005_part121_39.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.4nzzfs
title: Occurrence Download

description: A dataset containing 687 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea trichocarpa"
 ]
}

 The dataset includes 687 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047190-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/ek7fy-9z196
title: Bacillus thuringiensis

description: Bacillus thuringiensis ATCC 10792
description: <strong>Tilt Series Date:</strong> 2013-05-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus thuringiensis</p>
<strong>Strain:</strong> Bacillus thuringiensis</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> pure spores</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-30-20/rawdata/</p>Bthuringiensis_purespores0007.mrc,  Tilt Series (Pixel Size 0.56 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-30-20/rawdata/Bthuringiensis_purespores0007.mrc"
        > <i class="download icon"></i> Download </a></p>

        7_full.rec,  Reconstruction (Pixel Size 2.24 nm), 702.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-30-20/3dimage_32364/7_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.gtw6qp
title: Occurrence Download

description: A dataset containing 40021 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Agrostis vinealis, ? syreitschikowii, Agrostis alba coarctata, Agrostis alba vinealis, Agrostis alba coarctata, Agrostis alba coarctata, Agrostis alba vinealis, Agrostis alpestris, Agrostis arida, Agrostis borealis elatior, Agrostis borealis hyperborea, Agrostis borealis elongata, Agrostis borealis hyperborea, Agrostis buchtarmensis, Agrostis calamagrostoides, Agrostis canina arida, Agrostis canina elatior, Agrostis canina montana, Agrostis canina arida, Agrostis canina elatior, Agrostis canina glauca, Agrostis canina montana, Agrostis canina pusilla, Agrostis canina trinii, Agrostis canina alpina, Agrostis canina arida, Agrostis canina capillaris, Agrostis canina coarctata, Agrostis canina elatior, Agrostis canina elatior, Agrostis canina elatior, Agrostis canina glauca, Agrostis canina grandiflora, Agrostis canina humilis, Agrostis canina laevis, Agrostis canina minor, Agrostis canina montana, Agrostis canina montana, Agrostis canina mutica, Agrostis canina pusilla, Agrostis canina pusilla, Agrostis canina pusilla, Agrostis canina scotica, Agrostis canina spiculis-majoribus, Agrostis canina sylvatica, Agrostis canina tenuifolia, Agrostis canina tenuiloba, Agrostis canina vulgata, Agrostis coarctata, Agrostis coarctata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 40021 records from 317 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047187-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/hfak6-8rs03
title: drp1

description: purified drp1
description: <strong>Tilt Series Date:</strong> 2013-09-07</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Drp1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Chan</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-07-24/rawdata/</p>drp1_410008.mrc,  Tilt Series (Pixel Size 0.26 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-07-24/rawdata/drp1_410008.mrc"
        > <i class="download icon"></i> Download </a></p>

        drp1_410008_full.rec,  Reconstruction (Pixel Size 1.04 nm), 89.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-07-24/3dimage_30502/drp1_410008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pt1th-sbp33
title: Sulfolobus Solfactaricus P2

description: Looking for dividing cells
description: <strong>Tilt Series Date:</strong> 2014-03-13</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> Sulfolobus solfataricus </p>
<strong>Strain:</strong> P2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Sample Preparation:</strong> grown at home, synchronized using primary baby machine</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-03-13-7/rawdata/</p>stiv4hatlas10003.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-03-13-7/rawdata/stiv4hatlas10003.mrc"
        > <i class="download icon"></i> Download </a></p>

        stiv4hatlas10003_part111_13.rec,  Reconstruction (Pixel Size 2.52 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2014-03-13-7/3dimage_40120/stiv4hatlas10003_part111_13.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/vxhrwbckz3
title: Intraspecific comparative micromorphology of the Heliamphora pulchella (Sarraceniaceae) species complex

description: Photographs of the specimens or leaves used for the SEM survey.
DOI: 10.22002/qkmef-3w942
title: drp1

description: purified drp1
description: <strong>Tilt Series Date:</strong> 2013-09-10</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Drp1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Chan</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-10-20/rawdata/</p>drp1_275_8defocus0020.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-10-20/rawdata/drp1_275_8defocus0020.mrc"
        > <i class="download icon"></i> Download </a></p>

        drp1_275_8defocus0020_part61_2.rec,  Reconstruction (Pixel Size 1.56 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-10-20/3dimage_30667/drp1_275_8defocus0020_part61_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.fkdxn4
title: Occurrence Download

description: A dataset containing 580 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Antilophia bokermanni"
 ]
}

 The dataset includes 580 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047191-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/vxhrwbckz3.1
title: Intraspecific comparative micromorphology of the Heliamphora pulchella (Sarraceniaceae) species complex

description: Photographs of the specimens or leaves used for the SEM survey.
DOI: 10.22002/b1rqn-7kz18
title: E.coli Rabbit Ear

description: E.coli flagella motor search .
description: <strong>Tilt Series Date:</strong> 2008-01-15</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> MG1655</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 68.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in standard media with penicillin for 1h, isolate by centrifugation</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2008-01-15-8/rawdata/</p>sqr5tgt3_34k.mrc,  Tilt Series (Pixel Size 0.64 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2008-01-15-8/rawdata/sqr5tgt3_34k.mrc"
        > <i class="download icon"></i> Download </a></p>

        s5t3_34k_1k.rec.mrc,  Reconstruction (Pixel Size 1.28 nm), 336.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2008-01-15-8/3dimage_2846/s5t3_34k_1k.rec.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0xnva-8m787
title: E.coli Rabbit Ear

description: E.coli flagella motor search .
description: <strong>Tilt Series Date:</strong> 2008-01-15</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> MG1655</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 68.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in standard media with penicillin for 1h, isolate by centrifugation</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2008-01-15-9/rawdata/</p>s5t5_34k.mrc,  Tilt Series (Pixel Size 0.64 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2008-01-15-9/rawdata/s5t5_34k.mrc"
        > <i class="download icon"></i> Download </a></p>

        s5t5_34k_1k.rec.mrc,  Reconstruction (Pixel Size 1.28 nm), 278.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2008-01-15-9/3dimage_2848/s5t5_34k_1k.rec.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gcvmb-y8z30
title: Hyphomonas

description: Raw data files of Hyphomonas
description: <strong>Tilt Series Date:</strong> 2006-11-01</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Martin Thanbichler</p>
  aba2006-11-01-7_slicer8662.jpg: Hyphomonas neptunium .  DNA aba2006-11-01-7_slicer8664.jpg: Hyphomonas neptunium .  nucleoid .  DNA aba2006-11-01-7_slicer8665.jpg: Hyphomonas neptunium .  nucleoid .  DNA
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2006-11-01-7/rawdata/</p>Hyphomonas_11.mrc,  Tilt Series (Pixel Size 0.67 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2006-11-01-7/rawdata/Hyphomonas_11.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hyphomonas_11bin_full.mrc,  Reconstruction (Pixel Size 1.34 nm), 855.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2006-11-01-7/3dimage_1216/Hyphomonas_11bin_full.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h1f9f-w1v77
title: T. intermedia autotrophic 26 hrs

description: T. intermedia cell h9 grown in autotrophic conditions for 26 hours
description: <strong>Tilt Series Date:</strong> 2007-11-22</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 26 hours</p>
  civ2007-11-22-1_slicer7731.jpg: Thiomonas intermedia .  s-layer .  peptidoglycan
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-22-1/rawdata/</p>Ti_a26h_h9_200e13um18K_22nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-22-1/rawdata/Ti_a26h_h9_200e13um18K_22nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ti_a26h_h9_200e13um18K_22nov07_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 168.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-22-1/3dimage_4170/Ti_a26h_h9_200e13um18K_22nov07_bin2.rec"
        > <i class="download icon"></i> Download </a></p>