cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27921984.v1
title: Tabula Sapiens v2

description: Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues. Our work creates a detailed portrait of cell types as well as their distribution and variation in gene expression across tissues and within the endothelial, epithelial, stromal and immune compartments.We have built directly on our unique skills, experience, and data infrastructure from Tabula Muris and Tabula Muris Senis to create a high-quality human reference dataset and portal at a 10-fold larger scale from these prior efforts.A critical factor in the Tabula projects is our large collaborative network of PI’s with deep expertise at preparation of diverse organs, enabling all organs from a subject to be successfully processed within a single day. We have built the logistics and infrastructure capable of tracking hundreds of samples and thousands of 384-well plates from tissue through sample prep, library construction and on to sequencing and ultimately computational and expert cell annotation with tight quality control.Tabula Sapiens leverages our network of human tissue experts and a close collaboration with a Donor Network West, a not-for-profit organ procurement organization. We use their experience to balance and assign cell types from each tissue compartment and optimally mix high-quality plate-seq data and high-volume droplet-based data to provide a broad and deep benchmark atlas.With the second version, Tabula Sapiens 2.0, we have built an integrated map of 28 tissues collected across 24 donors. Nine new donors and four new tissues were collected and analyzed together with the original Tabula Sapiens 1.0 dataset. All tissues and organs, with the exception of the respective reproductive organs, were profiled from both male (n=11) and female (n=13) donors. The donor's age ranges from 22 to 74 years old, offering one of the most comprehensive molecular profiles of human tissues across the adult lifespan (7 donors under the age of 40, 11 donors between 40 and 60, and 6 donors over 60 years of age).
DOI: 10.6084/m9.figshare.28869779.v1
title: <b>Addition root exudates increase microbial biomass but decreases diversity and richness.</b>

description: Plant root exudates play a crucial role in regulating soil microbial communities. However, their diverse composition, low concentrations, and rapid degradability limit our understanding of how specific exudates influence microbial community attributes, such as biomass, diversity, and community structure. This meta-analysis study quantified the effects of exudates addition on soil microbial communities and explored the response mechanisms of different microbial attributes. The results showed that exudates addition significantly promoted microbial biomass but reduced microbial α-diversity, richness, and evenness, while also altering community structure. Natural exudates, with their diverse composition and higher nutrient content, had a stronger effect on promoting microbial biomass, whereas synthetic exudates might lead to the overgrowth of certain bacterial taxa, suppressing microbial community diversity. During the response process, changes in soil available nitrogen were identified as a key predictor for microbial biomass, soil pH as an important predictor for microbial richness and evenness, and the carbon input rate of exudates significantly suppressed α-diversity and altered community structure. Additionally, the C:N ratio of exudates played a critical role in regulating β-diversity and community structure. Overall, this study highlights that beyond the properties of exudates themselves, experimental conditions and changes in soil physicochemical properties are critical factors in microbial community regulation. These findings provide theoretical guidance for further research on the effects of exudates on soil ecosystems.
DOI: 10.17632/4c7vn8m92h
title: PEPSI — a Monte Carlo generator for polarized leptoproduction

description: Abstract We describe PEPSI (Polarized Electron Proton Scattering Interactions), a Monte Carlo program for polarized deep inelastic leptoproduction mediated by electromagnetic interaction, and explain how to use it. The code is a modification of the LEPTO 4.3 Lund Monte Carlo for unpolarized scattering. The hard virtual gamma-parton scattering is generated according to the polarization-dependent QCD cross-section of the first order in α_S . PEPSI requires the standard polarization-independent JETSET ro... Title of program: PEPSI version 1.1 Catalogue Id: ACJF_v1_0 Nature of problem Deep inelastic scattering of longitudinally polarized leptons off polarized nucleons or nuclei are the ideal tools to determine the spin distributions of partons inside such targets. Like the momentum distribution determined by unpolarized deep inelastic scattering, the partonic spin distributions contain an important dynamical information which strongly influence our understanding of the nucleon structure, and hence of non-perturbative Quantum Chromodynamics. The surprising result of a recent E ... Versions of this program held in the CPC repository in Mendeley Data ACJF_v1_0; PEPSI version 1.1; 10.1016/0010-4655(92)90016-R This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/8s7nz5gw7b
title: Data set - Application of casing treatment

description: It is a dataset on effect of different casing treatments such as, triangular and rectangular slots on the performance of a transonic rotor, NASA Rotor 67. The incorporation of slots reduces the compressor efficiency and increases the entropy. However, it positively influences the stall margin. The stall margin improvement for the triangular and rectangular slots was 4.4 and 2.8%, respectively. The addition of slots suppressed the growth and development of the tip leakage vortex.
DOI: 10.6084/m9.figshare.92596.v1
title: Vegetation of southern part of the Isalo Sandstone Massif (Central Madagascar, Africa) – differentiation and threats. In: Hartel H., Cilek V., Hebren T. A. Jackson & R. Williams (eds.) Sandstone Landscapes

description: Killarney Fern (Trichomanes speciosum Willd., Hymenophyllaceae) is one of the most endangered and interesting ferns in Europe which forms independent gametophyte colonies. In Poland it has been reported for the first time from two localities in the Westsudetian Highland, Lower Silesia. They are the most eastern outposts of this taxon in Europe, suffering the most severe climatic conditions in the extent of its occurrence. On both sites gametophytes occurred in horizontal rock fissures in Upper Cretaceous sandstone, surrounded by degraded eastern oak-hornbeam forests. Sixth year of its occurrence in Poland shows dynamic changes of its population state. Population occurred in the cave near Złotoryja has decreased between 2002 and 2006, to be almost extinct, but by the last two years it increased to half of its previous state. Gametophytes found in locality near the Lwówek Śląski (Panieńskie Skały) in years 2002-2004 has not been observed in 2008.
DOI: 10.17632/672n24fx8n
title: Supporting Data for Sustainable production of biodiesel using waste Jatropha curcas shells as a heterogeneous catalyst

description: This dataset contains the experimental data obtained from the physicochemical characterization of a heterogeneous catalyst derived from waste Jatropha curcas shells, as well as the characterization of the resulting fatty acid methyl esters (FAMEs) produced via transesterification. The catalyst was used for the sustainable production of biodiesel, as detailed in the manuscript titled "Sustainable production of biodiesel using waste Jatropha curcas shells as a heterogeneous catalyst" accepted in ACS Omega.

- The dataset includes raw and processed results from the following analytical techniques:
- Thermogravimetric analysis (TGA)
- The Brunauer-Emmett-Teller method (BET)
-Energy-dispersive X-ray spectroscopy (EDX)
- X-ray diffraction (XRD)
- Gas chromatography with flame ionization detection (GC-FID)

These data support the findings and conclusions presented in the article and are provided to enhance reproducibility and transparency.
DOI: 10.6084/m9.figshare.21120481.v1
title: Airbnb NYC 2019 data

description: <em>The New York City Airbnb 2019 Open Data is a dataset containing varius details about a listed unit, when the goal</em><br> <em>is to predict the rental price of a unit.</em><br> <br> <em>This dataset contains the details for units listed in NYC during 2019, was adapted from the following open kaggle</em><br> <em>dataset: https://www.kaggle.com/datasets/dgomonov/new-york-city-airbnb-open-data. This, in turn was downloaded from</em><br> <em>the Airbnb data repository http://insideairbnb.com/get-the-data.</em><br> <br> <em>This dataset is licensed under the Creative Commons Attribution 4.0 International License</em><br> <em>(https://creativecommons.org/licenses/by/4.0/).</em>
DOI: 10.17632/zjn2zxcgyz
title: ST_URA8_Dataset_part_1

description: This is a dataset for Bluetooth 5.1 DoA applications with URA8 antenna arrays. It was conceived as a starting point for developing and validating DoA algorithms for real-life scenarios. Unlike other datasets, it contains Bluetooth signals with not only varying intensity of additive white Gaussian noise, but also coherent interfering signals with random DoA coordinates. The dataset is divided into two branches, one consisting of pure sinusoidal tones and the second comprised of baseband Bluetooth signals. The Python code which generated this dataset is included. Therefore, the dataset can be expanded and also modified to suit other types of signals and simulate other types of antenna arrays. Please note that this is only the first part of the dataset. The dataset is comprised of four parts, and you need to download all of them in order to recreate the entire directory structure. Part 1: http://dx.doi.org/10.17632/zjn2zxcgyz.1 Part 2: http://dx.doi.org/10.17632/gysjfpvxpm.1 Part 3: http://dx.doi.org/10.17632/nnv3vpy4y3.1 Part 4: http://dx.doi.org/10.17632/362szwsnc4.1
DOI: 10.17632/3vfhvn7cb6
title: Data for: Spatial risk assessment of eastern monarch butterfly road mortality during fall migration within the southern corridor

description: Monarch roadkill transect survey data for Texas 2016-2017.
DOI: 10.17632/92mrpz7xx3
title: The Arg/N-degron pathway mediates the secretion of apoptotic exosomes under oxidative stress in cancer cell

description: Exosomes from cancer cells are versatile mediators of cell-to-cell communication, whose cargoes are dynamically loaded in response to various stress conditions. In this study, we demonstrate that under oxidative stress, cancer cells secrete exosomes that induce apoptosis in neighboring cells via the Arg/N-degron pathway. In this mechanism, RILP (Rab interacting lysosomal protein) is cleaved at Asp75 in response to oxidative stress which requires ATE1 R-transferase. The cleaved form of RILP recruits the ESCRT-II proteins VPS22 and VPS36 to endosomes from which the interluminal vesicles are invaginated generating exosomes. By using proteomics analyses, we also demonstrate exosomes secreted from cancer cells upon oxidative stress are enriched apoptotic proteins including pro-apoptotic and anti-inflammatory cytokine ANXA1. These exosomes induce apoptosis of normal cancer cells transporting ANXA1 in an Arg/N-degron pathway-dependent manner. Our results show that the Arg/N-degron pathway modulates exosome-mediated apoptosis in cancer cells under oxidative stress underlying RILP-dependent secretion of ANXA1.
We included the raw data of this articles. Raw data of Immunoblotting, Immunochemistry, electron microscope, and wound healing data are included as image files, and qunatification data of immunochemistry counting, electron microscope measurment, qRT-PCR relative delta, delta CQ values, cell viability measurement are arranged as Excel files with graph.
Further inquiries can be directed to the corresponding authors.
DOI: 10.6084/m9.figshare.20023832.v1
title: Data sheet.xlsx

description: Data Sheet. Musical Therapy.
DOI: 10.6084/m9.figshare.5280868.v1
title: BROT plant functional trait database: Data file

description: Main file for the BROT database; it includes the species name, the functional traits and the data, together with some indication of the methods and the geographical coordinates. The columns TaxonID and SourceID can be used to link with the Taxa and the Source files, respectively.
DOI: 10.17632/9c8jtskk5r
title: Data for: Can gamification increases consumers’ engagement in fitness apps? Compare the effectiveness of intrinsic and extrinsic game elements

description: Consumers' motivation, engagement behavior, and loyalty intentions to fitness apps
DOI: 10.25452/figshare.plus.25127495.v1
title: Normal Bone Marrow CODEX Segmentation Masks

description: Whole cell segmentation masks for CODEX images using Mesmer. DAPI was used for the nuclear channel and a merged membrane channel consisting of Vimentin, CD45, and NaK-ATPase was used. See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.7174914
DOI: 10.6084/m9.figshare.17981927.v1
title: Additional file 2 of STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families

description: Additional file 2. README text file containing information for the user about the STRIDE program, including instructions on its installation and execution and the interpretation of output.
DOI: 10.6084/m9.figshare.21680624.v1
title: Measured Physical Activity Age

description: Physical activity improves quality of life and is also an important protective factor against highly prevalent age-related diseases. With age, physical activity tends to decrease, leading down a vicious cycle that increases vulnerability to disease in the elderly. In the following, we trained a neural network to predict age from 115,456 one week-long 100Hz wrist accelerometer recordings from the UK Biobank (mean absolute error=3.7±0.2 years), using a variety of data structures to capture the complexity of real-world activity. We achieved this performance by preprocessing the raw frequency data as 2,271 scalar features, 113 time series, and four images. We then defined accelerated aging for a participant as being predicted older than one’s actual age and identified both genetic and environmental exposure factors associated with the new phenotype. We performed a genome wide association on the accelerated aging phenotypes to estimate its heritability (h_g2=12.3±0.9%) and identified ten single nucleotide polymorphisms in close proximity to genes in a histone and olfactory cluster on chromosome six (e.g <em>HIST1H1C, OR5V1</em>). Similarly, we identified biomarkers (e.g blood pressure), clinical phenotypes (e.g chest pain), diseases (e.g hypertension), environmental (e.g smoking), and socioeconomic (e.g income and education) variables associated with accelerated aging. Physical activity-derived biological age is a complex phenotype associated with both genetic and non-genetic factors. <br> The attached summary statistics are for the GWAS results.
DOI: 10.6084/m9.figshare.27078091.v1
title: Supplementary Material for: Receiving a pathogenic variant in a population breast cancer screening trial: a mixed method study

description: Introduction: Risk-based breast cancer screening aims to address persistent high morbidity and mortality. This study examines the experience of participants in the WISDOM (Women Informed to Screen Depending on Measures of Risk) trial who received a pathogenic variant in one of nine high or moderate penetrance breast cancer genes.
Methods: Participants completed a brief survey (n=181) immediately following results disclosure and one year later. Descriptive statistics were computed and comparisons between participants at different risk levels were performed using Fisher’s Exact and McNemar’s tests. Analysis of qualitative interviews (n=42) at 2-4 weeks and six months post results disclosure compared responses at the two timepoints, and explained and elaborated on the survey data.
Results: 66.3% of survey respondents felt very or moderately prepared to receive genomic results. At the T1 survey 80.7% of participants had shared the genetic result with a blood relative, increasing to 88.4% at T2; providing information and encouraging cascade testing were the most common reasons for sharing. Communication with a blood relative, other health care providers beyond the primary care provider, and cascade testing were higher for participants with a high risk than low or moderate risk genomic finding. Qualitative interviews elucidated varied reasons why participants felt (un)prepared for the results, including whether or not they had a family history of breast cancer, and illustrate the complexity of decision-making about sharing results.
Conclusions: Although most participants communicated results with family members and health care providers in accord with their risk level, questions remain about how to adequately prepare individuals to receive pathogenic results, ensure timely and accessible follow-up care, and facilitate genetic counseling and cascade testing of at-risk relatives in the setting of population risk-based screening.
DOI: 10.17632/n9dgpr3t7d
title: Global characterization of eukaryotic algal biosynthetic gene clusters using domain architectures

description: [antiSMASH output (GenBank format)]
antiSMASH output GenBank files of the eukaryotic algal biosynthetic gene clusters (BGC) detected in Kwon et al. (2023).
The candidate BGC identifiers are available in the attached table (Table S3. candidate BGC summary.xlsx).

[BGC clusters]
clustered candidates & clustered references: clusters including either only candidate BGCs or only reference BGCs
hit candidates: clusters including "hit" candidate BGCs and reference BGCs

[Disclosure] 
This data was cleared for public release by the Los Alamos National Laboratory (LA-UR-22-20439).
DOI: 10.6084/m9.figshare.19581691.v2
title: Data for 'A New Online Assessment of Cognitive Functions: Problem Solving, Executive Functions and Academic Outcomes in Primary School'

description: These datasets belong to the article 'A New Online Assessment of Cognitive Functions: Problem Solving, Executive Functions and Academic Outcomes in Primary School'. <br> Data on students executive functions, grades and task ratings are included in these datasets.
DOI: 10.6084/m9.figshare.23727198.v1
title: MEG (epoched data after ICA)

description: The 306-channel MEG and 3-axis accelerometer signals were measured during three-dimensional reaching movements. The data is the epoched MEG data after the artefact removal using ICA. The MEG data in the "ICA MEG data.zip" is provided in mat format and compatible with MATLAB software. The epoched data folder includes MEG signals truncated before and after the events. The folder has 18 mat files from nine subjects across two sessions.
DOI: 10.17632/9nwfzhrmj3
title: Dataset of the performance of RDTs for onchocerciasis, Gabon, 2015

description: Skin snip biopsies remain the gold standard for the diagnosis of active infection with Onchocerca volvulus. However, in low-prevalence settings, such as after several rounds of community directed treatment with ivermectin (CDTI), the sensitivity of skin snipping is low, and the procedure is poorly tolerated.
Detection of Ov16 IgG antibodies from dried blood spots (DBS) via enzyme linked immunosorbent assay (ELISA) or rapid diagnostic test (RDT) may therefore provide a more sensitive tool for the assessment of elimination of transmission (EoT). RDTs require little training and resources to deploy and are therefore favoured by policy makers in Lower-Middle Income Countries (LMICs).
This dataset was compiled from individual-based surveys conducted across 67 villages in Gabon in 2015, aiming to compare the performance of skin snipping versus that of Ov16 RDTs and ELISA.
Gabon had not received CDTI but features many implementation units (IU) with hypoendemic (&lt;35% microfilarial prevalence) transmission. Local healthcare centres conducted the surveys. The initial participant pool totalled 5829 individuals, with a median age of 30 years (Interquartile Range (IQR): 11-55 years).
Skin snips were obtained from 4350 individuals (sheet 1), and RDTs were performed on DBS collected from 4257 individuals. It's important to note that the individuals within these two groups do not always overlap.
337 individuals (7.7%) gave a positive skin snip, with 160 individuals (3.8%) recording a positive RDT. Of these, 110 individuals tested positive in both tests, giving the RDT an overall sensitivity of 69% and specificity of 39%.
At the village level (sheet 2), the data illustrate the variability in sensitivity and specificity profiles of RDTs across varying endemicities, as assessed against the skin snipping results. These findings are juxtaposed with serological classifications determined via ELISA.
High-specificity optimised onchocerciasis elimination program for the Americas (OEPA) ELISA was conducted in 58 (87%) of the 67 villages (sheet 3). A total of 2714 individuals underwent ELISA testing, producing 167 (6.2%) Ov16 positive results. 
These data highlight, that whilst broadly efficacious, there is a need for caution on the reliance of RDTs in determination of EoT and furthers calls for the development of novel RDT, with a target product profile (TPP) providing higher sensitivity and specificity values.
DOI: 10.6084/m9.figshare.13046246.v2
title: JVASP-6535 to JVASP-6574 (Positive bias)

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.16557390.v1
title: Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity

description: We provide the details for genome annotation of estuarine oyster, including gene locations (.gff3), protein models (.pep), CDS (.cds) and exon (.exon) sequences.
DOI: 10.6084/m9.figshare.26819107.v1
title: Data from: Penk et al (2024) Journal of Ecology

description: Data from:Penk, M.R., Kelly, A-M, Kelly-Quinn, M & Piggott, J.J. (2024) Temporal dynamics of stream algae under the combined impacts of climate and land-use stressors. Journal of Ecology.Algal biomass data from four time points (by reflectance) and final net primary productivity (NPP) data from a field experiment in relation to two climatic stressors (CO2 enrichment, flow variability) and two land-use related stressors (siltation, light - as lack of shading).<br>
DOI: 10.6084/m9.figshare.28458653.v1
title: Groundwater data.xlsx

description: This is the location and monitoring data of groundwater wells in typical areas of drylands in northern China, which can help us better understand the groundwater information in these areas.
DOI: 10.6084/m9.figshare.936568.v1
title: Using Bioinformatics: Genetic Research

description: Introductory curriculum for high school students (grades 9-12) that explores genetic research and bioinformatics. Posted on-line October 2012. Funded by NSF grant DRL-0833779
DOI: 10.5281/zenodo.15568121
title: Generation and Primality Testing of a 4096-Digit Prime Number Using Rhythm-Based Evolutionary Density Jump Method

description: This study presents the generation of a 4096-digit large prime number using a rhythm-based random jump method combined with prime density evolution (Density Evolution). After generation, the number was confirmed as prime within approximately 20 seconds using the Miller-Rabin probabilistic primality test. This prime number has potential applications in cryptography and large-scale mathematical research. The complete process, including generation method, primality testing technique, digit length, and generation time, is documented.