cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5896489
title: Supplementary Material for: Incidence, Survival, and Risk Factors for Adults with Acute Myeloid Leukemia Not Otherwise Specified and Acute Myeloid Leukemia with Recurrent Genetic Abnormalities: Analysis of the Surveillance, Epidemiology, and End Results (SEER) Database, 2001–2013

description: <b><i>Background/Aim:</i></b> As the knowledgebase of acute myeloid leukemia (AML) has grown, classification systems have moved to incorporate these new findings. <b><i>Methods:</i></b> We assessed 32,941 patients with AML whose records are contained in the Surveillance, Epidemiology, and End Results (SEER) database. <b><i>Results:</i></b> Half of all patients diagnosed between 2001 and 2013 did not have a World Health Organization (WHO) classification. Acute promyelocytic leukemia and acute panmyelosis with myelofibrosis were associated with the longest leukemia-specific survival (110 and 115 months, respectively), and AML with minimal differentiation and acute megakaryoblastic leukemia with the shortest (30 and 28 months, respectively). For patients in the WHO groups AML not otherwise specified (AML-NOS) and AML with recurrent genetic abnormalities (AML-RGA), the risk of death was greater for older patients and less for married patients. Black patients with any type of AML-NOS also had a higher risk of death. Patients whose case of AML did not receive a WHO classification were older and this group had a higher risk of death when compared to patients with a WHO type of AML-NOS. <b><i>Conclusion:</i></b> Our findings highlight the divergent outcomes of patients with AML and the importance of using the WHO classification system and demographic factors to gauge their prognosis.
DOI: 10.6084/m9.figshare.5896489.v1
title: Supplementary Material for: Incidence, Survival, and Risk Factors for Adults with Acute Myeloid Leukemia Not Otherwise Specified and Acute Myeloid Leukemia with Recurrent Genetic Abnormalities: Analysis of the Surveillance, Epidemiology, and End Results (SEER) Database, 2001–2013

description: <b><i>Background/Aim:</i></b> As the knowledgebase of acute myeloid leukemia (AML) has grown, classification systems have moved to incorporate these new findings. <b><i>Methods:</i></b> We assessed 32,941 patients with AML whose records are contained in the Surveillance, Epidemiology, and End Results (SEER) database. <b><i>Results:</i></b> Half of all patients diagnosed between 2001 and 2013 did not have a World Health Organization (WHO) classification. Acute promyelocytic leukemia and acute panmyelosis with myelofibrosis were associated with the longest leukemia-specific survival (110 and 115 months, respectively), and AML with minimal differentiation and acute megakaryoblastic leukemia with the shortest (30 and 28 months, respectively). For patients in the WHO groups AML not otherwise specified (AML-NOS) and AML with recurrent genetic abnormalities (AML-RGA), the risk of death was greater for older patients and less for married patients. Black patients with any type of AML-NOS also had a higher risk of death. Patients whose case of AML did not receive a WHO classification were older and this group had a higher risk of death when compared to patients with a WHO type of AML-NOS. <b><i>Conclusion:</i></b> Our findings highlight the divergent outcomes of patients with AML and the importance of using the WHO classification system and demographic factors to gauge their prognosis.
DOI: 10.6084/m9.figshare.5896477
title: Halophytes-associated endophytic and rhizospheric bacteria: diversity, antagonism and metabolite production

description: In Saudi Arabia, halophytes occupy tidal and intertidal forest ecosystems. They and their associated microflora have immense potential to yield novel and important useful natural products. Three halophytes (<i>Avicennia marina</i>, <i>Halocnemum strobilaceum</i>, <i>Zygophyllum qatarense</i>) were targeted for the isolation and identification of populations of endophytic and rhizospheric bacteria having antimicrobial potential. A total 554 bacterial isolates were initially screened against oomycetes fungal pathogens, <i>Phytophthora capsici</i> and <i>Pythium ultimum</i>. Of these, only 57 rhizospheric and endophytic bacteria exhibited inhibition against the targeted bioassay oomycetes<i>.</i> Tentative identification of the bacteria was on the basis of 16S rRNA gene sequences which revealed 92–100% sequence identity to type strains of related species and placed these organisms in six major classes: <i>Actinobacteria, γ-Proteobacteria, Firmicutes</i>, <i>α-Proteobacteria</i>, <i>Flavobacteriia</i> and <i>β-Proteobacteria</i>. When checked for lytic enzyme production, mostly the isolates of <i>Actinobacteria</i> and <i>Firmicutes</i> were potential enzyme producers. Detection of secondary metabolite biosynthetic genes – type I polyketide synthases, type II polyketide synthases and nonribosomal peptide synthetases – confirmed that 21 (35.5%) isolates were positive for at least one type of the biosynthetic gene. In order to identify metabolites, three isolates, <i>Alteromonas australica</i> (EA73), <i>Aidingimonas halophila</i> (EA105) and <i>Halomonas zincidurans</i> (EA127), were selected and subjected to chemical analyses using liquid chromatography–mass spectrometry and gas chromatography–mass spectrometry. Both analyses showed the presence of different bioactive compounds in the culture extracts of isolates some of which are already reported for their diverse biological activities such as 2, 4-Diacetylphloroglucinol. Our results demonstrated that halophytes represent an important source of potentially active bacteria producing antifungal metabolites of medical significance.
DOI: 10.6084/m9.figshare.5896477.v1
title: Halophytes-associated endophytic and rhizospheric bacteria: diversity, antagonism and metabolite production

description: In Saudi Arabia, halophytes occupy tidal and intertidal forest ecosystems. They and their associated microflora have immense potential to yield novel and important useful natural products. Three halophytes (<i>Avicennia marina</i>, <i>Halocnemum strobilaceum</i>, <i>Zygophyllum qatarense</i>) were targeted for the isolation and identification of populations of endophytic and rhizospheric bacteria having antimicrobial potential. A total 554 bacterial isolates were initially screened against oomycetes fungal pathogens, <i>Phytophthora capsici</i> and <i>Pythium ultimum</i>. Of these, only 57 rhizospheric and endophytic bacteria exhibited inhibition against the targeted bioassay oomycetes<i>.</i> Tentative identification of the bacteria was on the basis of 16S rRNA gene sequences which revealed 92–100% sequence identity to type strains of related species and placed these organisms in six major classes: <i>Actinobacteria, γ-Proteobacteria, Firmicutes</i>, <i>α-Proteobacteria</i>, <i>Flavobacteriia</i> and <i>β-Proteobacteria</i>. When checked for lytic enzyme production, mostly the isolates of <i>Actinobacteria</i> and <i>Firmicutes</i> were potential enzyme producers. Detection of secondary metabolite biosynthetic genes – type I polyketide synthases, type II polyketide synthases and nonribosomal peptide synthetases – confirmed that 21 (35.5%) isolates were positive for at least one type of the biosynthetic gene. In order to identify metabolites, three isolates, <i>Alteromonas australica</i> (EA73), <i>Aidingimonas halophila</i> (EA105) and <i>Halomonas zincidurans</i> (EA127), were selected and subjected to chemical analyses using liquid chromatography–mass spectrometry and gas chromatography–mass spectrometry. Both analyses showed the presence of different bioactive compounds in the culture extracts of isolates some of which are already reported for their diverse biological activities such as 2, 4-Diacetylphloroglucinol. Our results demonstrated that halophytes represent an important source of potentially active bacteria producing antifungal metabolites of medical significance.
DOI: 10.6084/m9.figshare.5896423
title: Additional file 7: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S6. Araneae Ă Hexapoda matrices. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.5896423.v1
title: Additional file 7: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S6. Araneae Ă Hexapoda matrices. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.5896414
title: Additional file 6: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S5. Sample-level matrices and taxonomy of OTUs. (XLSX 363Â kb)
DOI: 10.6084/m9.figshare.5896414.v1
title: Additional file 6: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S5. Sample-level matrices and taxonomy of OTUs. (XLSX 363Â kb)
DOI: 10.6084/m9.figshare.5896408
title: Additional file 5: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S4. Hexapoda and Araneae OTU sequences. (TXT 158Â kb)
DOI: 10.6084/m9.figshare.5896408.v1
title: Additional file 5: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S4. Hexapoda and Araneae OTU sequences. (TXT 158Â kb)
DOI: 10.6084/m9.figshare.5896402
title: Additional file 4: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S3. Fusion primers, index tags, and the UNIX codes used in the Illumina sequencing and bioinformatic procedures. (XLSX 211Â kb)
DOI: 10.6084/m9.figshare.5896402.v1
title: Additional file 4: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S3. Fusion primers, index tags, and the UNIX codes used in the Illumina sequencing and bioinformatic procedures. (XLSX 211Â kb)
DOI: 10.6084/m9.figshare.5896387
title: Additional file 2: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S2. Aligned 5.8S rRNA database sequences. (TXT 387Â kb)
DOI: 10.6084/m9.figshare.5896378
title: Additional file 1: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S1. Keywords used in the downloading of ITS sequences in the NCBI database. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.5896378.v1
title: Additional file 1: of DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

description: Data S1. Keywords used in the downloading of ITS sequences in the NCBI database. (TXT 1Â kb)
DOI: 10.6084/m9.figshare.5896345
title: Additional file 5: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S4. HapMap Project and 1000 Genomes Project populations with assigned ancestry category. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.5896345.v1
title: Additional file 5: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S4. HapMap Project and 1000 Genomes Project populations with assigned ancestry category. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.5896333
title: MOESM1 of Chitinase-3-like 1 is a biomarker of acute kidney injury and mortality in paediatric severe malaria

description: Additional file 1. Dataset for malaria, CHI3L1, acute kidney injury, and mortality.
DOI: 10.6084/m9.figshare.5896333.v1
title: MOESM1 of Chitinase-3-like 1 is a biomarker of acute kidney injury and mortality in paediatric severe malaria

description: Additional file 1. Dataset for malaria, CHI3L1, acute kidney injury, and mortality.
DOI: 10.6084/m9.figshare.5896327
title: Additional file 4: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S3. Specific examples to illustrate the application of the framework to the GWAS Catalog. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.5896327.v1
title: Additional file 4: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S3. Specific examples to illustrate the application of the framework to the GWAS Catalog. (XLSX 70 kb)
DOI: 10.6084/m9.figshare.5896318
title: Additional file 2: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

description: Full list of non-synonymous single nucleotide polymorphisms (SNPs) in all ten pneumococcal clinical isolates. (XLSX 8827Â kb)
DOI: 10.6084/m9.figshare.5896318.v1
title: Additional file 2: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

description: Full list of non-synonymous single nucleotide polymorphisms (SNPs) in all ten pneumococcal clinical isolates. (XLSX 8827Â kb)
DOI: 10.6084/m9.figshare.5896306
title: Additional file 3: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S2. GWAS Catalog detailed descriptions with ancestry category assignments. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.5896306.v1
title: Additional file 3: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S2. GWAS Catalog detailed descriptions with ancestry category assignments. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.5896297
title: Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

description: Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb)
DOI: 10.6084/m9.figshare.5896297.v1
title: Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

description: Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb)
DOI: 10.6084/m9.figshare.5896282
title: Additional file 2: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S1. GWAS Catalog countries of recruitment for which no ancestry information was provided. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.5896282.v1
title: Additional file 2: of A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

description: Table S1. GWAS Catalog countries of recruitment for which no ancestry information was provided. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.5896258
title: Depositional age and correlation of the Oonah Formation: refining the timing of Neoproterozoic basin formation in Tasmania

description: The Proterozoic Oonah Formation comprises a thick sequence of turbidites and mafic rocks that is widely exposed in western and northern Tasmania. The regional significance of the Oonah Formation is poorly understood as its contacts are faulted and estimates of its depositional age range from 1450 Ma to 700 Ma. Here we refine the depositional age of the Oonah Formation and clarify its relationship to other Proterozoic sequences in Tasmania. Magmatic apatite from the syn-sedimentary Cooee Dolerite has a <sup>207</sup>Pb-corrected <sup>238</sup>U/<sup>206</sup>Pb age of 733 ± 9 Ma that provides a robust estimate of the depositional age of the Oonah Formation. The Oonah Formation contains abundant 750 Ma detrital monazite and has detrital zircon age populations at 1800–1700 Ma, 1590 Ma, and 1450 Ma. The new age and provenance data support the interpretation that the Oonah Formation is a lateral equivalent of the base of the Togari Group and correlatives in Tasmania. We demonstrate that the stratigraphy and provenance of Neoproterozoic strata in Tasmania differ from time-equivalent sequences in Adelaide Rift Complex but are similar to the Pahrump Group (Death Valley, California) and the Cobham Formation (Transantarctic Mountains), which supports a southwest Laurentia—Tasmania—East Antarctica connection within supercontinent Rodinia.
DOI: 10.6084/m9.figshare.5896258.v2
title: Depositional age and correlation of the Oonah Formation: refining the timing of Neoproterozoic basin formation in Tasmania

description: The Proterozoic Oonah Formation comprises a thick sequence of turbidites and mafic rocks that is widely exposed in western and northern Tasmania. The regional significance of the Oonah Formation is poorly understood as its contacts are faulted and estimates of its depositional age range from 1450 Ma to 700 Ma. Here we refine the depositional age of the Oonah Formation and clarify its relationship to other Proterozoic sequences in Tasmania. Magmatic apatite from the syn-sedimentary Cooee Dolerite has a <sup>207</sup>Pb-corrected <sup>238</sup>U/<sup>206</sup>Pb age of 733 ± 9 Ma that provides a robust estimate of the depositional age of the Oonah Formation. The Oonah Formation contains abundant 750 Ma detrital monazite and has detrital zircon age populations at 1800–1700 Ma, 1590 Ma, and 1450 Ma. The new age and provenance data support the interpretation that the Oonah Formation is a lateral equivalent of the base of the Togari Group and correlatives in Tasmania. We demonstrate that the stratigraphy and provenance of Neoproterozoic strata in Tasmania differ from time-equivalent sequences in Adelaide Rift Complex but are similar to the Pahrump Group (Death Valley, California) and the Cobham Formation (Transantarctic Mountains), which supports a southwest Laurentia—Tasmania—East Antarctica connection within supercontinent Rodinia.
DOI: 10.6084/m9.figshare.5896255
title: Hunter–Bowen deformation in South Percy Island, northeastern Australia

description: South Percy Island is located approximately 50 km off the central Queensland coast and comprises a disrupted ophiolite mass alongside a diverse array of metamorphosed felsic and mafic rocks that record several episodes of magmatism, volcanism and deformation from the Permian to Early Cretaceous. This paper aims to constrain the age, affinity and deformation history of these units, as well as to establish the tectonic significance of the terrane. The trace-element compositions of mafic and felsic meta-igneous rocks record a change from MORB-like prior to <i>ca</i> 277 Ma to subduction-related by <i>ca</i> 258 Ma. Overprinting relationships between intrusive phases and deformation features reveal a relative chronology for the tectonothermal evolution of the area, while U–Pb and <sup>40</sup>Ar/<sup>39</sup>Ar geochronology provides absolute age constraints. Deformation is localised around a NNE-striking tectonic contact that separates serpentinised ultramafic rocks from metamorphosed pillow lavas. Early formed ductile fabrics associated with the main episode of deformation (D<sub>1</sub>) preserve bulk flattening strains at greenschist-facies conditions. Emplacement and post-kinematic cooling ages of a pre-D<sub>1</sub> quartz-monzonite dyke constrain the age of D<sub>1</sub>/M<sub>1</sub> deformation and metamorphism to the period between <i>ca</i> 258 and <i>ca</i> 248 Ma. Minor brittle deformation (D<sub>2</sub>) occurred at <i>ca</i> 230 Ma, based on U–Pb dating of a syn-D<sub>2</sub> diorite dyke (<i>ca</i> 231 ± 10 Ma) and several <i>ca</i> 230 Ma <sup>40</sup>Ar/<sup>39</sup>Ar cooling ages. The deformation, metamorphism, and supra-subduction zone magmatism preserved on South Percy Island is correlated with the nearby Marlborough Terrane and more broadly with the second pulse of the Hunter–Bowen Orogeny, which affected much of the central and northern parts of eastern Australia in the late Permian and Early Triassic. Our results support previous suggestions that the second pulse of the Hunter–Bowen Orogeny involved coeval thrust systems in both the inboard and outboard parts of the orogen.
DOI: 10.6084/m9.figshare.5896255.v1
title: Hunter–Bowen deformation in South Percy Island, northeastern Australia

description: South Percy Island is located approximately 50 km off the central Queensland coast and comprises a disrupted ophiolite mass alongside a diverse array of metamorphosed felsic and mafic rocks that record several episodes of magmatism, volcanism and deformation from the Permian to Early Cretaceous. This paper aims to constrain the age, affinity and deformation history of these units, as well as to establish the tectonic significance of the terrane. The trace-element compositions of mafic and felsic meta-igneous rocks record a change from MORB-like prior to <i>ca</i> 277 Ma to subduction-related by <i>ca</i> 258 Ma. Overprinting relationships between intrusive phases and deformation features reveal a relative chronology for the tectonothermal evolution of the area, while U–Pb and <sup>40</sup>Ar/<sup>39</sup>Ar geochronology provides absolute age constraints. Deformation is localised around a NNE-striking tectonic contact that separates serpentinised ultramafic rocks from metamorphosed pillow lavas. Early formed ductile fabrics associated with the main episode of deformation (D<sub>1</sub>) preserve bulk flattening strains at greenschist-facies conditions. Emplacement and post-kinematic cooling ages of a pre-D<sub>1</sub> quartz-monzonite dyke constrain the age of D<sub>1</sub>/M<sub>1</sub> deformation and metamorphism to the period between <i>ca</i> 258 and <i>ca</i> 248 Ma. Minor brittle deformation (D<sub>2</sub>) occurred at <i>ca</i> 230 Ma, based on U–Pb dating of a syn-D<sub>2</sub> diorite dyke (<i>ca</i> 231 ± 10 Ma) and several <i>ca</i> 230 Ma <sup>40</sup>Ar/<sup>39</sup>Ar cooling ages. The deformation, metamorphism, and supra-subduction zone magmatism preserved on South Percy Island is correlated with the nearby Marlborough Terrane and more broadly with the second pulse of the Hunter–Bowen Orogeny, which affected much of the central and northern parts of eastern Australia in the late Permian and Early Triassic. Our results support previous suggestions that the second pulse of the Hunter–Bowen Orogeny involved coeval thrust systems in both the inboard and outboard parts of the orogen.
DOI: 10.17608/k6.auckland.5896252
title: Bibliography of Student Beliefs publications

description: This paper contains a list of co-authored papers by Gavin Brown related to student beliefs, attitudes, and behaviours, especially around assessment. <br>The list is correct as of March 31, 2020.
DOI: 10.17608/k6.auckland.5896252.v2
title: Bibliography of Student Beliefs publications

description: This paper contains a list of co-authored papers by Gavin Brown related to student beliefs, attitudes, and behaviours, especially around assessment. <br>The list is correct as of March 31, 2020.
DOI: 10.17608/k6.auckland.5896249
title: Bibliography of Teacher Beliefs Publications

description: This document lists publications co-authored by Gavin T L Brown classified as having to do with Teacher Beliefs, Attitudes, or Behaviours. This includes Teacher Education.<br>it is correct as of 31 March 2020
DOI: 10.17608/k6.auckland.5896249.v2
title: Bibliography of Teacher Beliefs Publications

description: This document lists publications co-authored by Gavin T L Brown classified as having to do with Teacher Beliefs, Attitudes, or Behaviours. This includes Teacher Education.<br>it is correct as of 31 March 2020