cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fh0mc
title: Data from: Likelihood-based parameter estimation for high-dimensional phylogenetic comparative models: overcoming the limitations of 'distance-based' methods

description: Recently, a suite of distance-based multivariate phylogenetic comparative
 methods has been proposed for studying the evolution of high-dimensional
 traits, such as morphometric coordinates, gene expression data, and
 function-valued traits. These methods allow for the statistical comparison
 of evolutionary rates, assessment of phylogenetic signal, and tests of
 correlated high-dimensional trait evolution. Simulations reveal that
 distance-based comparative methods exhibit low statistical power and high
 Type I error under various evolutionary scenarios. Distance-based methods
 are also limited to relatively simple model specification (e.g., Brownian
 motion evolution) due to the lack of a likelihood function for parameter
 estimation. Here I propose an alternative method for studying
 high-dimensional trait evolution which overcomes some of the statistical
 limitations associated with distance-based methods. This framework, based
 on parametric bootstrapping and maximum pseudolikelihood parameter
 estimation, opens up the ability to estimate alternative evolutionary
 models, combine multiple evolutionary hypotheses, and potentially allow
 missing data and within-species variation. Simulations reveal that
 pairwise composite likelihood methods demonstrate appropriate Type I error
 and high statistical power, thus providing a robust framework for studying
 high-dimensional trait evolution. These methods are implemented in the R
 package phylocurve.
description: Code for R
 simulationsThese R scripts can be
 run to perform the power simulations that were used to generate Figures 2,
 3, and 4 in the manuscript. NOTE: phylocurve version 2.0.0 or higher must
 be installed. To install the latest version of phylocurve, run the
 following code after loading the package 'devtools':
 install_github("ericgoolsby/phylocurve",dependencies
 =TRUE)sim_scripts.zip
DOI: 10.5061/dryad.587v1
title: Data from: Sex ratio effects on reproductive strategies in humans

description: Characterizations of coy females and ardent males are rooted in models of
 sexual selection that are increasingly outdated. Evolutionary feedbacks
 can strongly influence the sex roles and subsequent patterns of sex
 differentiated investment in mating effort, with a key component being the
 adult sex ratio (ASR). Using data from eight Makushi communities of
 southern Guyana, characterized by varying ASRs contingent on migration, we
 show that even within a single ethnic group, male mating effort varies in
 predictable ways with the ASR. At male-biased sex ratios, men's and
 women's investment in mating effort are indistinguishable; only when
 men are in the minority are they more inclined towards short-term, low
 investment relationships than women. Our results support the behavioural
 ecological tenet that reproductive strategies are predictable and
 contingent on varying situational factors.
description: Sex Ratio and SOI
 DataCSV file containing
 individual and community-level data used in the analysis outlined in the
 article.SOI_Data.csv
DOI: 10.5061/dryad.0mk47
title: Data from: Propagule pressure increase and phylogenetic diversity decrease community’s susceptibility to invasion

description: Invasions pose a large threat to native species, but the question of why
 some species are more invasive, and some communities more prone to
 invasions than others, is far from solved. Using ten different
 three-species bacterial communities, we tested experimentally if the
 phylogenetic relationships between an invader and a resident community and
 propagule pressure affect invasion probability. We found that greater
 diversity in phylogenetic distances between the resident community members
 and the invader lowered invasion success, and higher propagule pressure
 increased invasion success whereas phylogenetic distance had no clear
 effect. In the later stages of invasion phylogenetic diversity had no
 effect on invasion success but community identity started to play a
 stronger role. Taken together, our results emphasize that invasion success
 at the early stages of invasion does not depend only on propagule
 pressure, but also on the properties of the community members. This is one
 of the first studies showing that phylogenetic diversity can constrain
 invasions. Our results thus indicate that invasion is a process where both
 invader and residing community characters act in concert.
description: Data for paper:Propagule
 pressure increase and phylogenetic diversity decrease community’s
 susceptibility to invasionPropagule pressure
 increase and phylogenetic diversity decrease community’s susceptibility to
 invasion, includes data in columns: on community's id (refers to
 table 1 in paper), time point 1=3days, 3=9 days after invasion, propagule
 size of propagule, replicate=1 or 2 to denote technical replicates,
 Smarcescens=colony number of S.marc, other colonies=number of other
 colonies, all colonies=sum of Smarc and other colonies, MeanDIstToSerra =
 mean phylogenetic distance of resident community members to invader,
 VarDistToSerra= variance of phylodistances to invaderCommunityInvasionToDryad.csv
DOI: 10.5061/dryad.p1k27
title: Data from: Phenotypic variation in overwinter environmental transmission of a baculovirus and the cost of virulence

description: A pathogen's ability to persist in the environment is an ecologically
 important trait, and variation in this trait may promote coexistence of
 different pathogen strains. We asked whether naturally occurring isolates
 of the baculovirus that infects gypsy moth larvae varied in their
 overwinter environmental transmission, and whether this variation was
 consistent with a tradeoff or an upper limit to virulence that might
 promote pathogen diversity. We used experimental manipulations to
 replicate the natural overwinter infection process using 16
 field-collected isolates. Virus isolates varied substantially in the
 fraction of larvae infected, leading to differences in overwinter
 transmission rates. Furthermore, isolates that killed more larvae also had
 higher rates of early larval death in which no infectious particles were
 produced, consistent with a cost of high virulence. Our results thus
 support the existence of a cost that could impose an upper limit to
 virulence even in a highly virulent pathogen.
description: Overwinter transmission
 data for gypsy moth baculovirusA csv file with
 individual fates (virus killed, survived, or other early death) for
 neonatal gypsy moth (Lymantria dispar) larvae infected in a field
 experiment that replicated the overwinter transmission process. Data also
 include the location of oviposition and the size of the virus-killed
 larval cadaver, estimated by image analysis. The field experiment was
 conducted in southwest Michigan, U.S., using 16 baculovirus isolates
 previously collected from virus-killed larvae in the U.S.
 Midwest.FlemingDaviesDwyer2015Data.csv
DOI: 10.5061/dryad.s86sd
title: Data from: Age-specific infectious period shapes dynamics of pneumonia in bighorn sheep

description: Superspreading, the phenomenon where a small proportion of individuals
 contribute disproportionately to new infections, has profound effects on
 disease dynamics. Superspreading can arise through variation in contacts,
 infectiousness or infectious periods. The latter has received little
 attention, yet it drives the dynamics of many diseases of critical public
 health, livestock health and conservation concern. Here, we present rare
 evidence of variation in infectious periods underlying a superspreading
 phenomenon in a free-ranging wildlife system. We detected persistent
 infections of Mycoplasma ovipneumoniae, the primary causative agent of
 pneumonia in bighorn sheep (Ovis canadensis), in a small number of older
 individuals that were homozygous at an immunologically relevant genetic
 locus. Interactions among age-structure, genetic composition and
 infectious periods may drive feedbacks in disease dynamics that determine
 the magnitude of population response to infection. Accordingly, variation
 in initial conditions may explain divergent population responses to
 infection that range from recovery to catastrophic decline and
 extirpation.
description: Plowright_et_al._2017_ELE_12829_dataThe attached data is a subset of that used in the Ecology Letters paper. Please email the corresponding author for the full data set and metadata and to discuss how the data can be appropriately used.
DOI: 10.5061/dryad.kt314
title: Data from: Cryptic sex? Estimates of genome exchange in unisexual mole salamanders (Ambystoma sp.)

description: Cryptic sex has been argued to explain the exceptional longevity of
 certain parthenogenetic vertebrate lineages, yet direct measurements of
 genetic exchange between sexual and apparently parthenogenetic forms are
 rare. Female unisexual mole salamanders (Ambystoma sp.) are the oldest
 known unisexual vertebrate lineage (~5 million years), and one hypothesis
 for their persistence is that allopolyploid female unisexuals periodically
 exchange haploid genomes ‘genome exchange’ during gynogenetic reproduction
 with males from sympatric sexual species. We test this hypothesis by using
 genome-specific microsatellite DNA markers to estimate the rates of genome
 exchange between sexual males and unisexual females in two ponds in NE
 Ohio. We also test the prediction that levels of gene flow should be
 higher for ‘sympatric’ (sexual males present) genomes in unisexuals
 compared to ‘allopatric’ (sexual males absent) unisexual genomes. We used
 a model testing framework in the coalescent-based program MIGRATE-N to
 compare models where unidirectional gene flow is present and absent
 between sexual species and unisexuals. As predicted, our results show
 higher levels of gene flow between sexuals and sympatric unisexual genomes
 compared to lower (likely artefactual) levels of gene flow between sexuals
 and allopatric unisexual genomes. Our results provide direct evidence that
 genome exchange between sexual and unisexual Ambystoma occurs and
 demonstrate that the magnitude depends on which sexual species are
 present. The relatively high levels of gene flow suggest that unisexuals
 must be at a selective advantage over sexual forms so as to avoid
 extinction due to genetic swamping through genome exchange.
description: migrate-n infiles for
 all groupsdata infiles for
 migrate-n analyses (5): A. jeffersonianum only, A. laterale only, All
 population combined, Ramsden data, and associated geofile for site
 localities.infiles_migrate.zip
DOI: 10.5061/dryad.779k1h4
title: Data from: Oxidative damage and antioxidant defence are assay and tissue dependent both in captive and in wild-caught bank voles (Myodes glareolus) before and after reproduction

description: 1. Reproduction is costly and life-history theory predicts that current
 parental investment will result in lower survival or decreased future
 reproduction. The physiological mechanisms mediating the link between
 reproduction and survival are still under debate and elevated oxidative
 damage during reproduction has been proposed as a plausible candidate. 2.
 Previous studies of oxidative stress during reproduction in animals under
 natural conditions have been restricted to analyses of blood. Herein, we
 measured the level of oxidative damage to lipids
 (thiobarbituric-acid-reactive substances) and proteins (carbonyls) in the
 liver, kidneys, heart and skeletal muscles in free-living bank vole
 females from spring and autumn generations, before and after reproduction.
 Antioxidant defence in the liver and kidneys was also determined. We
 expected oxidative damage to tissues and hypothesized that the damage
 would be more uniform between tissues in wild animals compared to those
 breeding under laboratory conditions. 3. Considering all combinations of
 markers/tissues/generations, oxidative damage in females did not differ
 before and after reproduction in 12 comparisons, was lower after
 reproduction in 3 comparisons, and was higher after breeding in one
 comparison. The total glutathione was significantly increased after
 reproduction only in the liver of the autumn generation and there was no
 change in catalase activity. 4. Our results confirm – for the first time
 in the field – previous observations from laboratory studies that there is
 no simple link between oxidative stress and reproduction and that patterns
 depend on the tissue and marker being studied. Overall however, our study
 does not support the hypothesis that the cost of reproduction in bank
 voles is mediated by oxidative stress in these tissues.
description: bank_vole_data
DOI: 10.5061/dryad.s1g64
title: Data from: Post-fire recovery in coastal sage scrub: seed rain and community trajectory

description: Disturbance is a primary mechanism structuring ecological communities.
 However, human activity has the potential to alter the frequency and
 intensity of natural disturbance regimes, with subsequent effects on
 ecosystem processes. In Southern California, human development has led to
 increased fire frequency close to urban areas that can form a positive
 feedback with invasive plant spread. Understanding how abiotic and biotic
 factors structure post-fire plant communities is a critical component of
 post-fire management and restoration. In this study we considered a
 variety of mechanisms affecting post-fire vegetation recovery in
 Riversidean sage scrub. Comparing recently burned plots to unburned plots,
 we found that burning significantly reduced species richness and percent
 cover of exotic vegetation the first two years following a 100-hectare
 wildfire. Seed rain was higher in burned plots, with more native forb
 seeds, while unburned plots had more exotic grass seeds. Moreover, there
 were significant correlations between seed rain composition and plant
 cover composition the year prior and the year after. Collectively, this
 case study suggests that fire can alter community composition, but there
 was not compelling evidence of a vegetation-type conversion. Instead, the
 changes in the community composition were temporary and convergence in
 community composition was apparent within two years post-fire.
description: Conlisk_etal_richnessSpecies coverConlisk_etal_seedsSeed rain data
DOI: 10.5281/zenodo.18385639
title: Experimental data for "Photon-starved polarimetry via functional classical shadows" arXiv:2509.19547

description: Polarization data are provided over 60 acquisition frames for each of the six polarizations.

Column headers correspond to different wavelengths.

Both calibration data and BBO data are uploaded.

See article for details: 

arXiv:2509.19547
DOI: 10.5281/zenodo.18385640
title: Experimental data for "Photon-starved polarimetry via functional classical shadows" arXiv:2509.19547

description: Polarization data are provided over 60 acquisition frames for each of the six polarizations.

Column headers correspond to different wavelengths.

Both calibration data and BBO data are uploaded.

See article for details: 

arXiv:2509.19547
DOI: 10.5061/dryad.j4n82
title: Data from: Sexually antagonistic association between paternal phenotype and offspring viability reinforces total selection on a sexually selected trait

description: The evolution of conspicuous sexually selected traits, such as horns or
 antlers, has fascinated biologists for more than a century. Elaborate
 traits can only evolve if they substantially increase reproduction,
 because they probably incur survival costs to the bearer. Total selection
 on these traits, however, includes sexual selection on sires and viability
 selection on offspring and can be influenced by changes in each of these
 components. Non-random associations between paternal phenotype and
 offspring viability may thus affect total selection on sexually selected
 traits. Long-term data on wild bighorn sheep (Ovis canadensis) provide the
 first evidence in nature that association between paternal phenotype and
 lamb viability strengthens total selection on horn size of adult rams, a
 sexually selected trait. The association of paternal horn length and
 offspring viability was sexually antagonistic: long-horned males sired
 sons with high viability but daughters of low viability. These results
 shed new light on the evolutionary dynamics of an iconic sexually selected
 trait and have important implications for sustainable wildlife management.
description: Individual
 dataSexually
 antagonistic association between paternal phenotype and offspring
 viability reinforces total selection on a sexually selected trait - id
 data.txt
DOI: 10.15468/dl.w66rc4
title: Occurrence Download

description: A dataset containing 11850415 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11850415 records from 4362 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001368-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59wsmn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tinca tinca (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021845-250525065834625/datasets/export for details.
DOI: 10.15468/dl.6m9eur
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Micropterus salmoides (Lacepède, 1802)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022340-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.28968977.v37
title: Syllogistic reasoning pdf v1-2-3-4 NEW

description: Logic and being
DOI: 10.15468/dl.fgh57x
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys copei (Gill, 1884)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9648 1.8496,26.9648 1.8496,26.9648 -7.1504,35.9648 -7.1504,35.9648 1.8496))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010544-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srxge7
title: Occurrence Download

description: A dataset containing 62037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CAN.9_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus Latreille, 1802"
 ]
}

 The dataset includes 62037 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010539-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.35zhbc
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplura",
 "Year 2017-2019",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Observation)"
 ]
}

 The dataset includes 44 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049969-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpzkdm
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protura",
 "Year 1999-2001",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Observation)"
 ]
}

 The dataset includes 42 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049970-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywahjd
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gentiana prostrata"
 ]
}

 The dataset includes 289 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049971-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/njftrm
title: A04_14262b.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/4ee91adb-e058-47f9-9515-fb7942fb0983'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/4ee91adb-e058-47f9-9515-fb7942fb0983
DOI: 10.7910/dvn/urpwlc
title: Preprint acceptance policies of Asian academic society journals in 2020

description: Status of preprint acceptance of Asian academic society journals in 2020
DOI: 10.7910/dvn/7uaehm
title: Replication Data for: "Diversity, Consensus, and Decision Making: Evidence from the US Courts of Appeals"

description: In this article, we identify key theoretical perspectives from the literature in social and organizational psychology on diversity and workgroups and apply these concepts to an analysis of decision making in the U.S. Courts of Appeals. Using data from twelve circuits over two decades, we leverage the diversification of the federal appellate bench to investigate the nature of the relationship between changes to a court’s gender and racial composition and levels of consensus. The results suggest that the impact of a diversified court depends on the size of the court.
description: Data for this project were collected with support from the National Science Foundation (NSF-SES #1655159, 1654614, 1654559, 1654697).