cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/1njjd-69q28
title: JV9082_Janelia42k

description: DotF-sfGFP fusion
description: <strong>Tilt Series Date:</strong> 2018-08-29</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal. Janelia Krios.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>
<strong>Sample Preparation:</strong> 6 grids were frozen for the JV9082 strain (2x concentrated culture); Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-387/rawdata/</p>JV9082_20180901a0161.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-387/rawdata/JV9082_20180901a0161.mrc"
        > <i class="download icon"></i> Download </a></p>

        JV9082_20180901a0161_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2018-08-29-387/3dimage_97093/JV9082_20180901a0161_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nepjp-ta370
title: P_aeruginosa_PA14_DfliF_Krios

description: Raw data files of P_aeruginosa_PA14_DfliF_Krios
description: <strong>Tilt Series Date:</strong> 2018-09-29</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (50.0°, -50.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -9.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Collaborators and Roles:</strong> I (mohammed) obtained the cells from Shannon Park (Dianne Newman lab). The cells are available in their library of Pseudomonas aeruginosa PA14.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> I inoculated one colony from an LB agar plate and grew the cells overnight in LB with 100 ug/ml of Gentamycin. Then I concentrated the cells three times and mixed them with gold nanoparticles and added 3 ul on to thick carbon R2 grids and blotted them and plunge froze them (force either 6 or 3, time either 3 or 2 seconds respectively, drain time 1 second).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-61/rawdata/</p>Pseudomonas_DfliF58.mrc,  Tilt Series (Pixel Size 0.53 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-61/rawdata/Pseudomonas_DfliF58.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudomonas_DfliF58_full.rec,  Reconstruction (Pixel Size 2.12 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-09-29-61/3dimage_97252/Pseudomonas_DfliF58_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8trmc-89v53
title: Hpylori_dFliF_FISE

description: These are H_pylori cells that are lacking FliP protein. In these cells, FliF protein was knocked out  .  to examine its relation to the hat-like complex.
description: <strong>Tilt Series Date:</strong> 2020-10-08</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> The cells were prepared and sent by Carrie Schaffer from the university of Kentucky. The cells were grown at 37C with 5% CO2 on sheep blood agar plates for 2 days from a -80C. No growth was seen . on the plates after 24 hr therefore the plates were kept in the . incubator for another 24Hr.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The samples were prepared with Vitrobot IV. Blotting conditions were either: blot force 6, blot . time 3, drain time 1 OR blot force -3, blot time 4, drain time 1, 100%  humidity. Cu grids. 10 nm . gold</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-289/rawdata/</p>Hpylori_DFliF_FISE_284.mrc,  Tilt Series (Pixel Size 0.452 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-289/rawdata/Hpylori_DFliF_FISE_284.mrc"
        > <i class="download icon"></i> Download </a></p>

        Hpylori_DFliF_FISE_284_part41_2.rec,  Reconstruction (Pixel Size 1.808 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-289/3dimage_114057/Hpylori_DFliF_FISE_284_part41_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hph0e-md962
title: Hippocampus Neurons

description: Hippocapmus mNeon-KDELnew DNA (1.6ug/ul)Quantifoil R2/2 on NH2 Au 200 mesh Extra thick carbon Cat# R2/2-LF-AU-NH2Low (grids) to high (dish) transferring
description: <strong>Tilt Series Date:</strong> 2020-02-16</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Rat Hippocampal Neuron (cultured)</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -3.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Zach Freyberg</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ssociated rat cortical and hippocampal neurons were prepared from embryonic day 18 (E18) Long-Evans rats (Charles River Laboratories, Wilmington, MA). Neurons were plated onto 35-mm- diameter circular glass-bottom dishes (MatTek, Ashland, MA) coated with poly-D-lysine (20 mg/ml) and laminin (3.4 mg/ml) at a density of 3.25 × 105 cells/ml (total volume, 2 ml). The neurons were maintained in neurobasal medium supplemented with B27, penicillin/streptomycin (100 U/ml and 100 mg/ml, respectively), and 2 mM glutamine. One-fifth of the medium in each dish was replaced every 4 days.</p>
<strong>Sample Preparation:</strong> Manual Blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2020-02-16-5/rawdata/</p>neuron10.mrc,  Tilt Series (Pixel Size 2.65 nm), 2.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        neuron10.rec,  Reconstruction (Pixel Size 10.6 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2020-02-16-5/3dimage_118762/neuron10.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wrktee
title: Occurrence Download

description: A dataset containing 437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Sylvilagus Gray, 1867"
 ]
}

 The dataset includes 437 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019926-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75ktbf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Cymbopogon excavatus",
 "Geometry POLYGON((29.76451 -26.09643, 32.1599 -26.09643, 32.1599 -22.51877, 29.76451 -22.51877, 29.76451 -26.09643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019924-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15578056
title: UAV-mounted multispectral vegetation surveys from 2019-2022 tropical savanna field campaigns

description: This repository contains drone data from vegetation surveys before and after fire events conducted from fieldwork in 2019, 2021 and 2022 in southern African and northern Australian savannas. These are split by instrument used to capture the images: a MicaSense RedEdge camera mounted on a DJI Matrice 100 (M100, 2019) and a DJI Phantom P4 Multispectral (P4, 2021 & 2022).

There are two files for each survey, both in GeoTIFF format. The bands file contains a stitched orthophoto, processed from multiple individual images captured from approximately 50m altitude with 80% overlap at each site. The classes file shows the same image classified into 5 separate vegetation categories. Information on these classes, as well as a description of the individual band contents is contained in the README file.

Also included is a csv file with ground measurements for above-ground biomass, in g/m². These are labelled with the survey ID code to which they correspond.

The two .qml files are suggested formatting for the classes GeoTIFF files, for use with QGIS software.

Please see the README file for further details on the data contents. For any queries on this dataset, please contact Tom Eames (t.eames2@exeter.ac.uk).
DOI: 10.5281/zenodo.15578057
title: UAV-mounted multispectral vegetation surveys from 2019-2022 tropical savanna field campaigns

description: This repository contains drone data from vegetation surveys before and after fire events conducted from fieldwork in 2019, 2021 and 2022 in southern African and northern Australian savannas. These are split by instrument used to capture the images: a MicaSense RedEdge camera mounted on a DJI Matrice 100 (M100, 2019) and a DJI Phantom P4 Multispectral (P4, 2021 & 2022).

There are two files for each survey, both in GeoTIFF format. The bands file contains a stitched orthophoto, processed from multiple individual images captured from approximately 50m altitude with 80% overlap at each site. The classes file shows the same image classified into 5 separate vegetation categories. Information on these classes, as well as a description of the individual band contents is contained in the README file.

Also included is a csv file with ground measurements for above-ground biomass, in g/m². These are labelled with the survey ID code to which they correspond.

The two .qml files are suggested formatting for the classes GeoTIFF files, for use with QGIS software.

Please see the README file for further details on the data contents. For any queries on this dataset, please contact Tom Eames (t.eames2@exeter.ac.uk).
DOI: 10.15468/dl.4px4zh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Crassula perforata",
 "Geometry POLYGON((29.76451 -26.09643, 32.1599 -26.09643, 32.1599 -22.51877, 29.76451 -22.51877, 29.76451 -26.09643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019923-250525065834625/datasets/export for details.
DOI: 10.15468/dl.c6qgwm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Cymbopogon plurinodis",
 "Geometry POLYGON((29.76451 -26.09643, 32.1599 -26.09643, 32.1599 -22.51877, 29.76451 -22.51877, 29.76451 -26.09643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019925-250525065834625/datasets/export for details.
DOI: 10.15468/dl.4a6qkb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Burmeistera catulum Muchhala & Mashburn"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019927-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8euz9q
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Burmeistera crebra McVaugh"
 ]
}

 The dataset includes 18 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019928-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15592309
title: Tabla de recogida de datos revisión sistemática brecha digital
DOI: 10.5281/zenodo.15592310
title: Tabla de recogida de datos revisión sistemática brecha digital
DOI: 10.15468/dl.z9pa5u
title: Occurrence Download

description: A dataset containing 70509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Oreopteris limbosperma (All.) Holub"
 ]
}

 The dataset includes 70509 records from 583 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019899-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15569389
title: Forest area on the Loess Plateau
DOI: 10.5281/zenodo.15569390
title: Forest area on the Loess Plateau
DOI: 10.34740/kaggle/dsv/12057876
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5517/ccdc.csd.cc26mpr9
title: CCDC 2044721: Experimental Crystal Structure Determination

description: Related Article: Arsalan Mirjafari|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jt14k
title: CCDC 2347758: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jt15l
title: CCDC 2347759: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kjyy0
title: CCDC 2369793: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kjyz1
title: CCDC 2369794: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ks5cx
title: CCDC 2376719: Experimental Crystal Structure Determination

description: Related Article: An-Ning Chen, Yan He, Zhang Zhang, Ying-Chun Wang, Yu-Yang Xie|2025|J.Org.Chem.|90|6672|doi:10.1021/acs.joc.5c00050
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7h8n
title: CCDC 2420271: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7h9p
title: CCDC 2420272: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7hbq
title: CCDC 2420273: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7hcr
title: CCDC 2420274: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7hds
title: CCDC 2420275: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7hft
title: CCDC 2420276: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m7hgv
title: CCDC 2420277: Experimental Crystal Structure Determination

description: Related Article: Takumi Matsuo|2025|CSD Communication|||
description: Related Article: Takumi Matsuo, Shotaro Hayashi|2025|J.Mater.Chem.C|13|10944|doi:10.1039/D5TC00817D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m8jr6
title: CCDC 2421278: Experimental Crystal Structure Determination

description: Related Article: Sheng-Fu Wang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.