cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17695977
title: Extended Data for "Exploring the Experiences of Students with Physical Disabilities at a University in KwaZulu-Natal, South Africa"

description: This repository contains the extended data associated with the manuscript titled “Exploring the Experiences of Students with Physical Disabilities at a University in KwaZulu-Natal, South Africa”, submitted to F1000Research.

The extended data include study materials used during data collection, namely:





Interview guide




Participant Information Sheet




Participant Consent form template




Ethical clearance document 



These materials are provided to support transparency, reproducibility, and methodological clarity.No identifiable or original participant data are included due to ethical restrictions.
DOI: 10.15468/dl.y7jazy
title: Occurrence Download

description: A dataset containing 45771585 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-138.35026 48.93288,-109.58356 48.93288,-109.58356 61.47376,-138.35026 61.47376,-138.35026 48.93288))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2000-2025"
 ]
}

 The dataset includes 45771585 records from 692 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005152-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gy6p6p
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triturus ivanbureschi",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 104 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049445-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/6115
title: Seed-of-awakening-functional-prototype
DOI: 10.57967/hf/6351
title: Seed-of-awakening-functional-prototype
DOI: 10.25919/pzrf-f590
title: NBDL-HK48NMHBNSC1AJ
DOI: 10.25919/y9wy-dx89
title: NBDL-HK3SZKXMPD8QT0
DOI: 10.25919/t3dd-7937
title: NBDL-HK4AMQXWHC9RJT
DOI: 10.25919/7a43-wb73
title: NBDL-HK4A8AEKKAKP8C
DOI: 10.25919/sa1w-b350
title: NBDL-HK4AMQZQJCPFVB
DOI: 10.25919/brz4-7t08
title: NBDL-HK4B09FQQBJRSW
DOI: 10.15468/dl.2kqvpz
title: Occurrence Download

description: A dataset containing 305774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum invalid, Geodetic datum assumed WGS84, Footprint WKT mismatch, Country mismatch, Country derived from coordinates, Continent derived from coordinates, Continent coordinate mismatch, Recorded date mismatch, Recorded date invalid, Taxon match fuzzy, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, Modified date invalid, Identified date invalid, Multimedia date invalid, References URI invalid, Individual count invalid, Occurrence status unparsable, Occurrence status inferred from individual count)",
 "OccurrenceStatus is Present",
 "TaxonKey is Robinia pseudoacacia",
 "Year 1950-2025"
 ]
}

 The dataset includes 305774 records from 2225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009360-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.gk4m1
title: Data from: Coevolution-based inference of amino acid interactions underlying protein function

description: Protein function arises from a poorly understood pattern of energetic
 interactions between amino acid residues. Sequence-based strategies for
 deducing this pattern have been proposed, but lack of benchmark data has
 limited experimental verification. Here, we extend deep-mutation
 technologies to enable measurement of many thousands of pairwise amino
 acid couplings in several homologs of a protein family – a deep coupling
 scan (DCS). The data show that cooperative interactions between residues
 are loaded in a sparse, evolutionarily conserved, spatially contiguous
 network of amino acids. The pattern of amino acid coupling is
 quantitatively captured in the coevolution of amino acid positions,
 especially as indicated by the statistical coupling analysis (SCA),
 providing experimental confirmation of the key tenets of this method. This
 work exposes the collective nature of physical constraints on protein
 function and clarifies its link with sequence analysis, enabling a general
 practical approach for understanding the structural basis for protein
 function.
description: Salinas_Ranganathan_dataDeep mutational coupling data in five homologs of the PDZ domain protein family
DOI: 10.5061/dryad.d1458
title: Data from: Density regulation in Northeast Atlantic fish populations: density dependence is stronger in recruitment than in somatic growth

description: 1. Population regulation is a central concept in ecology, yet in many
 cases its presence and the underlying mechanisms are difficult to
 demonstrate. The current paradigm maintains that marine fish populations
 are predominantly regulated by density-dependent recruitment. 2. While it
 is known that density-dependent somatic growth can be present too, its
 general importance is unknown and most practical applications neglect it.
 This study aimed to close this gap by for the first time quantifying and
 comparing density dependence in growth and recruitment over a large set of
 fish populations. 3. We fitted density-dependent models to time series
 data on population size, recruitment and age-specific weight from
 commercially exploited fish populations in the Northeast Atlantic Ocean
 and the Baltic Sea. Data were standardised to enable a direct comparison
 within and among populations, and estimated parameters were used to
 quantify the impact of density regulation on population biomass. 4.
 Statistically significant density dependence in recruitment was detected
 in a large proportion of populations (70%) whereas for density dependence
 in somatic growth the prevalence of density dependence depended heavily on
 the method (26% and 69%). Despite age-dependent variability, the density
 dependence in recruitment was consistently stronger among age groups and
 between alternative approaches that use weight-at-age or weight increments
 to assess growth. Estimates of density-dependent reduction of biomass
 underlined these results: 97% of populations with statistically
 significant parameters for growth and recruitment showed a larger impact
 of density-dependent recruitment on population biomass. 5. The results
 reaffirm the importance of density-dependent recruitment in marine fishes,
 yet they also show that density dependence in somatic growth is not
 uncommon. Further, the results are important from an applied perspective
 because density dependence in somatic growth affects productivity and
 catch composition, and therefore the benefits of maintaining fish
 populations at specific densities.
description: Data
 sheetsAll data files
 containing stock information and weight-at-age data from ICES stock
 assessment reports (www.ices.dk).
DOI: 10.5061/dryad.26077
title: Data from: Lead acid battery recycling for the 21st century

description: There is a growing need to develop novel processes to recover lead from
 end-of-life lead-acid batteries, due to increasing energy costs of
 pyrometallurgical lead recovery, the resulting CO2 emissions and the
 catastrophic health implications of lead exposure from lead-to-air
 emissions. To address these issues, we are developing an
 iono-metallurgical process, aiming to displace the pyrometallurgical
 process that has dominated lead production for millennia. The proposed
 process involves the dissolution of Pb salts into the DES Ethaline 200, a
 liquid formed when a 1:2 molar ratio of choline chloride and ethylene
 glycol are mixed together. Once dissolved the Pb can be recovered through
 electrodeposition and the liquid can then be recycled for further Pb
 recycling. Firstly, deep eutectic solvents (DESs) are being used to
 dissolve the lead compounds (PbCO3, PbO, PbO2 and PbSO4) involved and
 their solubilities measured by inductively coupled plasma optical emission
 spectrometry (ICP-OES). The resulting Pb2+ species are then reduced and
 electrodeposited as elemental lead at the cathode of an electrochemical
 cell; cyclic voltammetry and chronoamperometry are being used to determine
 the electrodeposition behaviour and mechanism. The electrodeposited films
 were characterised by scanning electron microscopy (SEM) and X-ray
 photoelectron spectroscopy (XPS). We discuss the implications and
 opportunities of such processes.
description: Collated raw
 data
DOI: 10.15468/dl.y9cea7
title: Occurrence Download

description: A dataset containing 23208 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "Country is Brazil",
 "TaxonKey is one of (Rodentia, Didelphimorphia, Lagomorpha)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2026"
 ]
}

 The dataset includes 23208 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001524-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.88bq8
title: Data from: Defaunation increases the spatial clustering of lowland Western Amazonian tree communities

description: 1.Declines of large vertebrates in tropical forests may reduce dispersal
 of tree species that rely on them, and the resulting undispersed seedlings
 might suffer increased distance- and density- dependent mortality.
 Consequently, extirpation of large vertebrates may alter the composition
 and spatial structure of plant communities and impair ecosystem functions
 like carbon storage. 2.We analysed spatial patterns of tree recruitment
 within six forest plots along a defaunation gradient in western Amazonia.
 We divided recruits into two size cohorts (“saplings”, ≥1 m tall and
 &lt;1 cm diameter at breast height [dbh], and juveniles, 1 – 2 cm dbh)
 and examined the spatial organization of conspecific recruits within each
 cohort (within-cohort) and around conspecific reproductive-sized trees
 (between-cohort). We used replicated spatial point pattern analysis to
 quantify relationships between recruit clustering and cohort, defaunation
 intensity, each tree species’ reliance on hunted dispersers and the
 interactions among these three covariates. 3.Within-cohort clustering of
 conspecific saplings increased with reliance of tree species on hunted
 dispersers and this trend strengthened significantly as defaunation
 increased, probably because of reduced dispersal. 4.Within-cohort
 clustering of conspecifics declined from saplings to juveniles, suggesting
 density-dependent mortality of saplings. However, the positive
 relationship between sapling clustering and defaunation did not lead to
 greater reductions in within-cohort clustering during the sapling-juvenile
 transition, suggesting that higher conspecific densities did not translate
 into increased mortality. Instead, the increased spatial clustering
 associated with defaunation was retained for juvenile recruits.
 5.Between-cohort clustering was unrelated to defaunation and did not
 change during the sapling – juvenile transition. 6.Synthesis: Defaunation
 increased spatial aggregation of saplings of tree species reliant on
 hunted dispersers. The increase in sapling clustering did not increase
 density-dependent thinning, and persisted into older recruit cohorts,
 suggesting that hunting may initiate long-term spatial reorganisation of
 Amazonian tree communities. The lack of increased density-dependent
 thinning indicates that reduced dispersal did not increase mortality of
 large-vertebrate dispersed tree species that contribute disproportionately
 to forest biomass. We therefore caution against the fait accompli
 acceptance of the prediction by recent modelling studies that overhunting
 will precipitate a collapse in carbon sequestration by tropical forests.
description: Site
 dataData on six sites used
 in the analysis, including vertebrate numbers used to calculate the
 defaunation index.sitedata.csvDispersal syndrome dataData on the means of dispersal for 274 tree species.MDDspp_dispersal_syndromes_18jul2017.csvTree size and locationsLocation and size data for trees used in analysismdd6plots_data_22jul2016.csv
DOI: 10.5061/dryad.8d638
title: Data from: Phylogenomic reclassification of the world’s most venomous spiders (Mygalomorphae, Atracinae), with implications for venom evolution

description: Here we show that the most venomous spiders in the world are
 phylogenetically misplaced. Australian atracine spiders (family
 Hexathelidae), including the notorious Sydney funnel-web spider Atrax
 robustus, produce venom peptides that can kill people. Intriguingly,
 eastern Australian mouse spiders (family Actinopodidae) are also medically
 dangerous, possessing venom peptides strikingly similar to Atrax
 hexatoxins. Based on the standing morphology-based classification, mouse
 spiders are hypothesized distant relatives of atracines, having diverged
 over 200 million years ago. Using sequence-capture phylogenomics, we
 instead show convincingly that atracines are sister to actinopodids, and
 that hexathelids are non-monophyletic. Three new mygalomorph lineages are
 elevated to the family level, and a revised circumscription of the family
 Hexathelidae is presented. Re-writing this phylogenetic story has major
 implications for how we study venom evolution in these spiders, and
 potentially genuine consequences for antivenom development and bite
 treatment research. More generally, our research provides a textbook
 example of the applied importance of modern phylogenomic research.
description: Tree
 files.tre files from various
 phylogenetic analyses (RaxML concat, RaxML concat partitioned, MrBayes,
 ASTRAL, SVD)Hexathelid_All_tre_files70% occupancy matrix70% occupancy (381 loci, 78103 basepairs) UCE matrix70.phylip50% occupancy matrix50% occupancy (514 loci, 101652 basepairs) UCE matrix50.phylip
DOI: 10.5061/dryad.3vs6b
title: Data from: Phanerozoic survivors: actinopterygian evolution through the Permo-Triassic and Triassic-Jurassic mass extinction events

description: Actinopterygians (ray-finned fishes) successfully passed through four of
 the big five mass extinction events of the Phanerozoic, but the effects of
 these crises on the group are poorly understood. Many researchers have
 assumed that the Permo-Triassic mass extinction (PTME) and end-Triassic
 extinction (ETE) had little impact on actinopterygians, despite
 devastating many other groups. Here, two morphometric techniques,
 geometric (body shape) and functional (jaw morphology), are used to assess
 the effects of these two extinction events on the group. The PTME elicits
 no significant shifts in functional disparity while body shape disparity
 increases. An expansion of body shape and functional disparity coincides
 with the neopterygian radiation and evolution of novel feeding adaptations
 in the Middle-Late Triassic. Through the ETE, small decreases are seen in
 shape and functional disparity, but are unlikely to represent major
 changes brought about by the extinction event. In the Early Jurassic,
 further expansions into novel areas of ecospace indicative of durophagy
 occur, potentially linked to losses in the ETE. As no evidence is found
 for major perturbations in actinopterygian evolution through either
 extinction event, the group appears to have been immune to two major
 environmental crises that were disastrous to most other organisms.
description: Data_set_D1Data set including specimen information, body shape data (procrustes aligned landmark data and pairwise procrustes distances), functional raw measurements and PC outputs, taxonomic, environmental and group data, results from statistical tests (NPMANOVA and permutation) and image references.
DOI: 10.17632/64dhsznpfx
title: Thermal Image Dataset for Human Pose Keypoint Detection

description: This dataset consists of 2,500 thermal images at 720×576 resolution, annotated for human pose keypoint detection using the YOLO-Pose format with 17 COCO-style human keypoints.
DOI: 10.5061/dryad.5jn7b
title: Data from: Convergent evolution of floral shape tied to pollinator shifts in Iochrominae (Solanaceae)

description: Flower form is one of many floral features thought to be shaped by
 pollinator-mediated selection. Although the drivers of variation in flower
 shape have often been examined in microevolutionary studies, relatively
 few have tested the relationship between shape evolution and shifts in
 pollination system across clades. In the present study, we use
 morphometric approaches to quantify shape variation across the Andean
 clade Iochrominae and estimate the relationship between changes in shape
 and shifts in pollination system using phylogenetic comparative methods.
 We infer multiple shifts from an ancestral state of narrow, tubular
 flowers toward open, bowl-shaped or campanulate flowers as well as one
 reversal to the tubular form. These transitions in flower shape are
 significantly correlated with changes in pollination system. Specifically,
 tubular forms tend to be hummingbird-pollinated and the open forms tend to
 be insect-pollinated, a pattern consistent with experimental work as well
 as classical floral syndromes. Nonetheless, our study provides one of the
 few empirical demonstrations of the relationship between flower shape and
 pollination system at a macroevolutionary scale.
description: Smith_and_Kriebel_2018This package includes the files needed to reproduce the morphometric and comparative analyses in the following paper: Smith, S.D., and R. Kriebel. 2018. Convergent evolution of floral shape tied to pollinator shifts in Iochrominae (Solanaceae). Evolution.
DOI: 10.17632/64dhsznpfx.1
title: Thermal Image Dataset for Human Pose Keypoint Detection

description: This dataset consists of 2,500 thermal images at 720×576 resolution, annotated for human pose keypoint detection using the YOLO-Pose format with 17 COCO-style human keypoints.
DOI: 10.5061/dryad.84827
title: Data from: Identification of allosteric disulphides from labile bonds in X-ray structures

description: Protein disulfide bonds link pairs of cysteine sulfur atoms and are either
 structural or functional motifs. The allosteric disulfides control the
 function of the protein in which they reside when cleaved or formed. Here,
 we identify potential allosteric disulfides in all Protein Data Bank X-ray
 structures from bonds that are present in some molecules of a protein
 crystal but absent in others, or present in some structures of a protein
 but absent in others. We reasoned that the labile nature of these
 disulfides signifies a propensity for cleavage and so possible allosteric
 regulation of the protein in which the bond resides. A total of 511 labile
 disulfide bonds were identified. The labile disulfides are more stressed
 than the average bond, being characterized by high average torsional
 strain and stretching of the sulfur–sulfur bond and neighbouring bond
 angles. This pre-stress likely underpins their susceptibility to cleavage.
 The coagulation, complement and oxygen-sensing hypoxia inducible factor-1
 pathways, which are known or have been suggested to be regulated by
 allosteric disulfides, are enriched in proteins containing labile
 disulfides. The identification of labile disulfide bonds will facilitate
 the study of this post-translational modification.
description: Table
 S1Excel spreadsheet of
 unique disulphides in a culled set of X-ray structures described by G.
 Wang and R. Dunbrack, Jr. (file pdbaanr).Table
 S2Excel spreadsheet of
 labile disulphide bonds present in some molecules of a protein crystal but
 absent in others (same PDB, sheet 1), or present in some structures of a
 protein but absent in others (different PDB, sheet 2).
DOI: 10.5061/dryad.r3206
title: Data from: Male spiders control offspring sex ratio through greater production of female-determining sperm

description: Sex allocation theory predicts that when sons and daughters have different
 reproductive values, parents should adjust offspring sex ratio towards the
 sex with the higher fitness return. Haplo-diploid species directly control
 offspring sex ratio, but species with chromosomal sex determination (CSD)
 were presumed to be constrained by Mendelian segregation. There is now
 increasing evidence that CSD species can adjust sex ratio strategically,
 but the underlying mechanism is not well understood. One hypothesis states
 that adaptive control is more likely to evolve in the heterogametic sex
 through a bias in gamete production. We investigated this hypothesis in
 males as the heterogametic sex in two social spider species that
 consistently show adaptive female biased sex ratio and in one subsocial
 species that is characterised by equal sex ratio. We quantified the
 production of male (0) and female (X) determining sperm cells using flow
 cytometry, and show that males of social species produce significantly
 more X-carrying sperm than 0-sperm, on average 70%. This is consistent
 with the production of more daughters. Males of the subsocial species
 produced a significantly lower bias of 54% X-carrying sperm. We also
 investigated whether inter-genomic conflict between hosts and their
 endosymbionts may explain female bias. Next generation sequencing showed
 that five common genera of bacterial endosymbionts known to affect sex
 ratio are largely absent, ruling out that endosymbiont bacteria bias sex
 ratio in social spiders. Our study provides evidence for paternal control
 over sex allocation through biased gamete production as a mechanism by
 which the heterogametic sex in CSD species adaptively adjust offspring sex
 ratio.
description: Supplementary
 Information sperm scatter plotsThis supplementary excel
 file presents the raw data of the flow cytometry analysis. Every worksheet
 represents one sperm sample that is named according to sample names in
 table S1. Within a worksheet the original and corrected scatterplots can
 be found, together with the output of the normalmixEM function in
 R.
DOI: 10.17632/kjmx24ysfx.1
title: Data&Code: Promotion incentives and participatory governance in China: Evidence from TV policy inquiry

description: This dataset provides the materials necessary to replicate the empirical analysis in the paper "Promotion incentives and participatory governance in China: Evidence from TV policy inquiry".
The replication package contains:
A Readme file with a detailed description of data sources, data files, codes and software requirements.
Publicly available data files.