cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7733951
title: Additional file 2: of Impact of two oral doses of 100,000â IU of vitamin D3 in preschoolers with viral-induced asthma: a pilot randomised controlled trial

description: Study intervention and procedures. (xlsx 14 kb)
DOI: 10.6084/m9.figshare.7733960.v1
title: Additional file 3: of Impact of two oral doses of 100,000â IU of vitamin D3 in preschoolers with viral-induced asthma: a pilot randomised controlled trial

description: Study mechanics. (xlsx 15 kb)
DOI: 10.7284/127323
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR20 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127326
title: Gravimeter data collected during research cruise AR20 using a Bell BGM-3 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7733927
title: Additional file 2: of Crowded developmental environment promotes adult sex-specific nutrient consumption in a polyphagous fly

description: Table S1. Complete analysis of the effect of larval treatment on adult body weight. Bold: p
DOI: 10.6084/m9.figshare.7733927.v1
title: Additional file 2: of Crowded developmental environment promotes adult sex-specific nutrient consumption in a polyphagous fly

description: Table S1. Complete analysis of the effect of larval treatment on adult body weight. Bold: p
DOI: 10.7284/127316
title: Gyrocompass data collected during research cruise AR20 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127321
title: Radiometer data collected during research cruise AR20 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127322
title: Radiometer data collected during research cruise AR20 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127320
title: Singlebeam Echosounder data collected during research cruise AR20 using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7733885
title: Omega-3 Study

description: Effect of omega-3 fatty acids on oxidative stress and inflammatory processes in isolated macrophages.
DOI: 10.6084/m9.figshare.7733885.v1
title: Omega-3 Study

description: Effect of omega-3 fatty acids on oxidative stress and inflammatory processes in isolated macrophages.
DOI: 10.7284/127314
title: Speedlog data collected during research cruise AR20 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127319
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR20 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127313
title: Water Temperature data collected during research cruise AR20 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127312
title: TSG (Thermosalinograph) data collected during research cruise AR20 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127348
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR21 using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127340
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR21 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7733111
title: CCDB_1025.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.7284/127336
title: Fluorometer data collected during research cruise AR21 using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7733111.v1
title: CCDB_1025.jpg

description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
DOI: 10.7284/127347
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR21 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127354
title: Gravimeter data collected during research cruise AR21 using a Bell BGM-3 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127338
title: Gyrocompass data collected during research cruise AR21 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127343
title: Radiometer data collected during research cruise AR21 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732973
title: Supplemental Figures - Low-intensity exercise induces acute shifts in liver and skeletal muscle substrate metabolism, but not chronic adaptations in tissue oxidative capacity

description: <strong>Supplemental Figures S1 -S8.</strong><strong>Supplemental Tables S1 and S2.</strong><br>
DOI: 10.6084/m9.figshare.7733012
title: Dataset for: An explicit microFE approach to investigate the post-yield behaviour of trabecular bone under large deformations

description: Homogenised finite element (FE) analyses are able to predict osteoporosis-related bone fractures and become useful for clinical applications. The predictions of FE analyses depend on the apparent, heterogeneous, anisotropic, elastic and yield material properties, which are typically determined by implicit μFE analyses of trabecular bone. The objective of this study is to explore an explicit μFE approach to determine the apparent post-yield behaviour of trabecular bone, beyond the elastic and yield properties. The material behaviour of bone tissue was described by elasto-plasticity with a von Mises yield criterion closed by a planar cap for positive hydrostatic stresses to distinguish the post-yield behaviour in tension and compression. Two ultimate strains for tension and compression were calibrated to trigger element deletion and reproduce damage of trabecular bone. A convergence analysis was undertaken to assess the role of the mesh. Thirteen load cases using periodicity-compatible mixed uniform boundary conditions were applied to three human trabecular bone samples of increasing volume fractions. The effect of densification in large strains was explored. The convergence study revealed a strong dependence of the apparent ultimate stresses and strains on element size. An apparent quadric strength surface for trabecular bone was successfully fitted in a normalised stress space. The effect of densification was reproduced and correlated well with former experimental results. This study demonstrates the potential of the explicit FE formulation and the element deletion technique to reproduce damage in trabecular bone using μFE analyses. The proper account of the mesh sensitivity remains challenging for practical computing times.
DOI: 10.6084/m9.figshare.7732973.v1
title: Supplemental Figures - Low-intensity exercise induces acute shifts in liver and skeletal muscle substrate metabolism, but not chronic adaptations in tissue oxidative capacity

description: <strong>Supplemental Figures S1 -S8.</strong><strong>Supplemental Tables S1 and S2.</strong><br>
DOI: 10.6084/m9.figshare.7733012.v1
title: Dataset for: An explicit microFE approach to investigate the post-yield behaviour of trabecular bone under large deformations

description: Homogenised finite element (FE) analyses are able to predict osteoporosis-related bone fractures and become useful for clinical applications. The predictions of FE analyses depend on the apparent, heterogeneous, anisotropic, elastic and yield material properties, which are typically determined by implicit μFE analyses of trabecular bone. The objective of this study is to explore an explicit μFE approach to determine the apparent post-yield behaviour of trabecular bone, beyond the elastic and yield properties. The material behaviour of bone tissue was described by elasto-plasticity with a von Mises yield criterion closed by a planar cap for positive hydrostatic stresses to distinguish the post-yield behaviour in tension and compression. Two ultimate strains for tension and compression were calibrated to trigger element deletion and reproduce damage of trabecular bone. A convergence analysis was undertaken to assess the role of the mesh. Thirteen load cases using periodicity-compatible mixed uniform boundary conditions were applied to three human trabecular bone samples of increasing volume fractions. The effect of densification in large strains was explored. The convergence study revealed a strong dependence of the apparent ultimate stresses and strains on element size. An apparent quadric strength surface for trabecular bone was successfully fitted in a normalised stress space. The effect of densification was reproduced and correlated well with former experimental results. This study demonstrates the potential of the explicit FE formulation and the element deletion technique to reproduce damage in trabecular bone using μFE analyses. The proper account of the mesh sensitivity remains challenging for practical computing times.
DOI: 10.7284/127345
title: Radiometer data collected during research cruise AR21 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127335
title: Speedlog data collected during research cruise AR21 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17608/k6.auckland.7732967.v1
title: Wave runup FieldData

description: This database comprises wave, beach and runup parameters measured on different beaches around the world. It is a compilation of data published in previous works, with the aim of making all data available in one single repository. More information about methods of data acquisition and data processing can be found in the original papers that describe each experiment. To know how to cite each of the dataset provided here, please check section 3. Please make sure to cite the appropriate publication when using the data. Collecting the data is hard work and needs to be acknowledged.
DOI: 10.7284/127327
title: Splitbeam Echosounder data collected during research cruise AR21 using a Kongsberg EK80 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732898
title: First Vaginal Birth after Cesarean: a retrospective cohort study

description: <b>Objective:</b> The main aim of this study was to explore the course of labor and extent of perineal trauma at the first vaginal birth after cesarean section (fVBAC) in comparison to primiparous vaginal birth (PVB) in women without epidural analgesia. <b>Study design:</b> All fVBACs without epidural analgesia and the subsequent PVBs (controls) between 2012 - 2016 were included in this retrospective cohort study. Data were collected from health records and included maternal characteristics and labor details in both groups as well as cervical dilation at the time of previous cesarean in fVBAC group. <b>Results:</b> The study comprised 510 women; 255 fVBACs and 255 controls. The majority of fVBACs were after a pre-labor cesarean section – 177 (69.4%). There was a statistically significant difference in the recorded duration of first stage between the fVBACs and controls (289 vs. 347min respectively, p <b>Conclusion:</b> Compared to primiparous women having a vaginal birth, women having their first vaginal birth after a cesarean section have a shorter 1<sup>st</sup> stage of labor, a higher risk of sustaining cervical lacerations and perineal trauma. However, the risk of anal sphincter injury does not seem to be increased.
DOI: 10.6084/m9.figshare.7732898.v1
title: First Vaginal Birth after Cesarean: a retrospective cohort study

description: <b>Objective:</b> The main aim of this study was to explore the course of labor and extent of perineal trauma at the first vaginal birth after cesarean section (fVBAC) in comparison to primiparous vaginal birth (PVB) in women without epidural analgesia. <b>Study design:</b> All fVBACs without epidural analgesia and the subsequent PVBs (controls) between 2012 - 2016 were included in this retrospective cohort study. Data were collected from health records and included maternal characteristics and labor details in both groups as well as cervical dilation at the time of previous cesarean in fVBAC group. <b>Results:</b> The study comprised 510 women; 255 fVBACs and 255 controls. The majority of fVBACs were after a pre-labor cesarean section – 177 (69.4%). There was a statistically significant difference in the recorded duration of first stage between the fVBACs and controls (289 vs. 347min respectively, p <b>Conclusion:</b> Compared to primiparous women having a vaginal birth, women having their first vaginal birth after a cesarean section have a shorter 1<sup>st</sup> stage of labor, a higher risk of sustaining cervical lacerations and perineal trauma. However, the risk of anal sphincter injury does not seem to be increased.
DOI: 10.7284/127342
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR21 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732844
title: Resnet weights for age/gender prediction

description: Resnet weights for age/gender prediction using ANTsRNet<br>
DOI: 10.6084/m9.figshare.7732703
title: Attitudes, practices and barriers of community pharmacists to public health activities

description: The data set provides the data about the attitude, practices and barriers of community pharmacists to participation in public health activities in Yemen.
DOI: 10.7284/127332
title: Water Temperature data collected during research cruise AR21 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732514
title: Lieber et al_SightingData_Terns.csv

description: This data set of tern sightings was used to compute Fig 2 in the following publication: Localised anthropogenic wake generates a predictable foraging hotspot for top predators. <br>
DOI: 10.7284/127328
title: TSG (Thermosalinograph) data collected during research cruise AR21 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732442
title: Podosphaera xanthii mycoviral sequences

description: <i>Podosphaera xanthii</i> mycoviral sequences<i>.<br></i><br>
DOI: 10.6084/m9.figshare.7732460
title: Data, analyses and simulations

description: This is the repository for our publication "Comparative analyses of phenotypic sequences using phylogenetic trees". This large '.zip' file contains several directories will all scripts and data for our manuscript. The repository is divided into directories with the correspondent information and data.<br><br>/data: Has the song sequences in raw format and time rescaled formats. Also, divided in complete sequences (the 5s recording interval) and song bouts. See main text and supplementary material for more information.<br><br>/empirical_analysis: Has the scripts and results for the sequence alignment and model fit to the data. These are subdivided into treatments following the same rationale described on the manuscript.<br><br>/phylogeny: Has the molecular alignment, BEAST xml files and the MCC tree used in this study.<br><br>/r_package_source_file: The source file with the R package used for model fit.<br><br>/simulations: The scripts and results for simulations.<br><br>/tutorial_analyses: An script showing how to use the resources of the R package.
DOI: 10.6084/m9.figshare.7732514.v1
title: Lieber et al_SightingData_Terns.csv

description: This data set of tern sightings was used to compute Fig 2 in the following publication: Localised anthropogenic wake generates a predictable foraging hotspot for top predators. <br>
DOI: 10.7284/127372
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR22 using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732442.v2
title: Podosphaera xanthii mycoviral sequences

description: <i>Podosphaera xanthii</i> mycoviral sequences<i>.<br></i><br>
DOI: 10.7284/127365
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR22 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732442.v1
title: Data Citation 4_P xanthii mycoviral sequences

description: <i>Podosphaera xanthii</i> mycoviral sequences<i>.<br></i><br>
DOI: 10.6084/m9.figshare.7732460.v1
title: Data, analyses and simulations

description: This is the repository for our publication "Comparative analyses of phenotypic sequences using phylogenetic trees". This large '.zip' file contains several directories will all scripts and data for our manuscript. The repository is divided into directories with the correspondent information and data.<br><br>/data: Has the song sequences in raw format and time rescaled formats. Also, divided in complete sequences (the 5s recording interval) and song bouts. See main text and supplementary material for more information.<br><br>/empirical_analysis: Has the scripts and results for the sequence alignment and model fit to the data. These are subdivided into treatments following the same rationale described on the manuscript.<br><br>/phylogeny: Has the molecular alignment, BEAST xml files and the MCC tree used in this study.<br><br>/r_package_source_file: The source file with the R package used for model fit.<br><br>/simulations: The scripts and results for simulations.<br><br>/tutorial_analyses: An script showing how to use the resources of the R package.
DOI: 10.6084/m9.figshare.7732460.v3
title: Data, analyses and simulations

description: This is the repository for our publication "Comparative analyses of phenotypic sequences using phylogenetic trees". This large '.zip' file contains several directories will all scripts and data for our manuscript. The repository is divided into directories with the correspondent information and data.<br><br>/data: Has the song sequences in raw format and time rescaled formats. Also, divided in complete sequences (the 5s recording interval) and song bouts. See main text and supplementary material for more information.<br><br>/empirical_analysis: Has the scripts and results for the sequence alignment and model fit to the data. These are subdivided into treatments following the same rationale described on the manuscript.<br><br>/phylogeny: Has the molecular alignment, BEAST xml files and the MCC tree used in this study.<br><br>/r_package_source_file: The source file with the R package used for model fit.<br><br>/simulations: The scripts and results for simulations.<br><br>/tutorial_analyses: An script showing how to use the resources of the R package.
DOI: 10.7284/127363
title: Fluorometer data collected during research cruise AR22 using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7732328
title: Analysis of transgenic zebrafish expressing the Lenz-Majewski syndrome gene PTDSS1 in skeletal cell lineages.

description: Four figures and two tables. The dataset refers to creation and analysis of zebrafish carrying transgenes encoding human PTDSS1, as described in the F1000 manuscript, "<strong>Analysis of transgenic zebrafish expressing the Lenz-Majewski syndrome gene<i> PTDSS1</i> in skeletal cell lineages</strong>". The Excel spreadsheets give raw qPCR(relating to Figure 2) and phenotyping (relating to Figure 4) data.
DOI: 10.6084/m9.figshare.7732460.v2
title: Data, analyses and simulations

description: This is the repository for our publication "Comparative analyses of phenotypic sequences using phylogenetic trees". This large '.zip' file contains several directories will all scripts and data for our manuscript. The repository is divided into directories with the correspondent information and data.<br><br>/data: Has the song sequences in raw format and time rescaled formats. Also, divided in complete sequences (the 5s recording interval) and song bouts. See main text and supplementary material for more information.<br><br>/empirical_analysis: Has the scripts and results for the sequence alignment and model fit to the data. These are subdivided into treatments following the same rationale described on the manuscript.<br><br>/phylogeny: Has the molecular alignment, BEAST xml files and the MCC tree used in this study.<br><br>/r_package_source_file: The source file with the R package used for model fit.<br><br>/simulations: The scripts and results for simulations.<br><br>/tutorial_analyses: An script showing how to use the resources of the R package.
DOI: 10.6084/m9.figshare.7732367.v1
title: The multiple roles of feedback in GTPB bioinformatics training courses

description: @page { margin: 2cm } p { margin-bottom: 0.25cm; line-height: 115% } The multiple roles of feedback in GTPB bioinformatics training courses In Face-to-Face training courses there are multiple opportunities for collecting valuable feedback. Instant feedback is elicited by questioning the audience during the course to gauge the effectiveness of the learning in various aspects, reflecting on the comfort of the learner in using new skills without help (usage independence). On top of allowing for immediate corrections in the delivery, the answers allow the instructors to pay special attention to learners in difficulty. After the course, a standardised feedback questionnaire collects qualitative and quantitative data, aiming at the evaluation of course quality, adequacy of the methods and immediate impact. GTPB courses have been systematically recording post-course short term feedback for the last 12 years.
DOI: 10.7284/127371
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR22 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition