cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24715263.v1
title: vars_CN-2213635_Whole-Exome_FT_LowQualFiltered_RunCommonFiltered_Whole-Exome_GlobalCommonFiltered.vcf

description: Case 2 mother
DOI: 10.6073/pasta/745040a873689a1039c1e207fdc20bc7
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 9 meteorological station: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily Average of 30-minute Soil Volumetric Water Content data at 10 cm at CSIS Block-9. Collection of soil water content data at Jornada LTER Cross-scale Interactions Study (CSIS) blocks, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Soil volumetric water content is measured every 30 minutes at 10 cm depth at 3 locations at each of the 4 plots per block and averaged for the daily value. The locations in each plot are under bare soil, under perennial grass, and under shrub. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are recorded at an automated meteorological station installed at Jornada LTER CSIS Block-9 site. This is an ONGOING dataset.
DOI: 10.5281/zenodo.10252212
title: The grain size endmembers of Tengchongbeihai wetland sediments over the past 46 ka

description:  Here, we present a grain size end-member analysis for Tengchongbeihai wetland sediments from southwestern China to investigate the paleo-hydroclimate changes since the late MIS3. The overall low fine silt (EM2) content before ~16.5 cal ka BP resulted from weak catchment erosion indicating weak ISM during cold glacial while the increasing trend thereafter indicates the ISM strengthened during the last deglaciation and Holocene. Such an orbital ISM evolution resembles to the insolation gradient between 25°N and 25°S during the boreal summer periods, which implies the transequatorial insolation difference could be an alternative explanation for the orbital scale low latitude hydroclimate changes. The striking peaks of coarse component (EM3) around ~12, 16, 24, 29, 32 and 39 cal ka BP were related to significant water level descending indicating the millennial ISM collapse corresponding to the YD and Heinrich events. However, the absence of sawtooth feature as the NGRIP δ18O and the well correspondence to the Indian Ocean sea surface temperatures (SSTs) of the ISM collapses evidence the complementary role of low latitude climate for the North Atlantic climate on the millennial scale hydroclimate variabilities.
DOI: 10.5281/zenodo.10252213
title: The grain size endmembers of Tengchongbeihai wetland sediments over the past 46 ka

description:  Here, we present a grain size end-member analysis for Tengchongbeihai wetland sediments from southwestern China to investigate the paleo-hydroclimate changes since the late MIS3. The overall low fine silt (EM2) content before ~16.5 cal ka BP resulted from weak catchment erosion indicating weak ISM during cold glacial while the increasing trend thereafter indicates the ISM strengthened during the last deglaciation and Holocene. Such an orbital ISM evolution resembles to the insolation gradient between 25°N and 25°S during the boreal summer periods, which implies the transequatorial insolation difference could be an alternative explanation for the orbital scale low latitude hydroclimate changes. The striking peaks of coarse component (EM3) around ~12, 16, 24, 29, 32 and 39 cal ka BP were related to significant water level descending indicating the millennial ISM collapse corresponding to the YD and Heinrich events. However, the absence of sawtooth feature as the NGRIP δ18O and the well correspondence to the Indian Ocean sea surface temperatures (SSTs) of the ISM collapses evidence the complementary role of low latitude climate for the North Atlantic climate on the millennial scale hydroclimate variabilities.
DOI: 10.6073/pasta/72af5a1ab6e1d55a1409b42f53245b33
title: Jornada Basin LTER Cross-scale Interactions Study (CSIS) Block 9 meteorological station: 1-second summary precipitation data: 2017 - ongoing

description: 1-second summary precipitation data at CSIS Block-9 met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER CSIS Block-9 site.. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset.
DOI: 10.13011/m3-x0qx-yf02
title: Phase-Field Modeling of Stored-Energy-Driven Grain Growth
DOI: 10.5281/zenodo.10252224
title: Economics

description: Economics
DOI: 10.5281/zenodo.10252225
title: Economics

description: Economics
DOI: 10.6069/t12a-k683
title: Evaluation of Solid Phase Adsorption Toxin Tracking (SPATTs) for passive monitoring of Per- and Polyfluoroalkyl Substances (PFAS) using Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)

description: Detection and monitoring of per- and polyfluoroalkyl substances (PFAS) in aquatic environments has become a central priority of regulatory agencies as increasing public concern is focused on minimizing PFAS intake. While many methods utilize active sampling strategies (“grab samples”) for precise PFAS quantitation, here we evaluate the efficacy of low-cost passive sampling devices (Solid Phase Adsorption Toxin Tracking, or SPATTs) for spatial and temporal PFAS assessment of aquatic systems. Passive samplers were deployed in North Carolina along the Cape Fear River during the summer months of 2016 and 2017 originally intended for detection of microcystins and monitoring of potentially harmful agal blooms, though this period also coincided with occurrences of PFAS discharge from a local fluorochemical manufacturer into the river. A subset of the samplers deployed in 2016 were analyzed via liquid chromatography coupled with ion mobility spectrometry-mass spectrometry (LC-IMS-MS) for potential PFAS adsorption in 2021, and after encouraging results were obtained from this preliminary data, additional samplers were deployed subsequently in 2022. Results from this study demonstrated that the resin commonly utilized in SPATTs (Diaion HP20) provided effective binding of PFAS and while legacy compounds were observed in moderate abundance across almost all sampling sites (PFHxS, PFOS, PFHxA, etc.), emerging replacement PFAS (e.g., Nafion Byproducts) were predominantly localized downstream from the manufacturer. Furthermore, samplers deployed downstream from the manufacturer in 2022 noted sharp decreases in observed signal for replacement PFAS in com-parison to samplers deployed in 2016 and 2017, indicating mitigation and remediation efforts in the area were able to reduce localized fluorochemical contamination.
DOI: 10.5281/zenodo.10232693
title: Dataset for the paper - "Synchronized LFP rhythmicity in the social brain reflects the context of social encounters"

description: Dataset for the paper:
Synchronized LFP rhythmicity in the social brain reflects the context of social encounters
Alok Nath Mohapatra,*, David Peles, Shai Netser, Shlomo Wagner
*Corresponding author: Alok Nath Mohapatra, Email: thinkalok@gmail.com 
Affiliation: Sagol Department of Neurobiology, Faculty of Natural Sciences, University of Haifa, POB. 3338, Haifa 3103301, Israel.
DOI: 10.5281/zenodo.10232694
title: Dataset for the paper - "Synchronized LFP rhythmicity in the social brain reflects the context of social encounters"

description: Dataset for the paper:
Synchronized LFP rhythmicity in the social brain reflects the context of social encounters
Alok Nath Mohapatra,*, David Peles, Shai Netser, Shlomo Wagner
*Corresponding author: Alok Nath Mohapatra, Email: thinkalok@gmail.com 
Affiliation: Sagol Department of Neurobiology, Faculty of Natural Sciences, University of Haifa, POB. 3338, Haifa 3103301, Israel.
DOI: 10.6084/m9.figshare.24204231.v1
title: Multi-step nucleation pathway of C-S-H during cement hydration from atomistic simulations

description: Supplementary information of the paper "Multi-step nucleation pathway of C-S-H during cement hydration from atomistic simulations"
DOI: 10.6084/m9.figshare.24598434.v1
title: Supplementary data for "Changes in orogenic style and surface environment recorded in Paleoproterozoic foreland successions"

description: Supplementary data for the paper "Changes in orogenic style and surficial environment recorded in Paleoproterozoic foreland successions" by Huang et al. Detailed information about data sets can be found in the file of "Description of Supplementary Data.docx".
DOI: 10.6084/m9.figshare.24598434
title: Supplementary data for "Changes in orogenic style and surface environment recorded in Paleoproterozoic foreland successions"

description: Supplementary data for the paper "Changes in orogenic style and surficial environment recorded in Paleoproterozoic foreland successions" by Huang et al. Detailed information about data sets can be found in the file of "Description of Supplementary Data.docx".
DOI: 10.6084/m9.figshare.24204231
title: Multi-step nucleation pathway of C-S-H during cement hydration from atomistic simulations

description: Supplementary information of the paper "Multi-step nucleation pathway of C-S-H during cement hydration from atomistic simulations"
DOI: 10.6084/m9.figshare.24501238.v1
title: Nonredox trivalent nickel catalyzing nucleophilic electrooxidation of organics

description: The data in the paper are given
DOI: 10.6084/m9.figshare.24501238
title: Nonredox trivalent nickel catalyzing nucleophilic electrooxidation of organics

description: The data in the paper are given
DOI: 10.7910/dvn/o3yvet
title: The Study of Analysis

description: The following textbook, published in Harvard College, is for the study on Graduate Analysis courses. The book aims in presenting theorems, proofs, remarks and comments, in a Theorem...Proof style, where in concern, disseminates the expositions on Analysis in diversity, from Introductory to Numerical Analysis.
DOI: 10.5281/zenodo.7329924
title: Numerical Modeling for Choked Flow of CO2 through Converging-Diverging Fracture

description: This ANSYS project files were made to investigate the choked flow of CO2 through the converging-diverging (CD) fracture. The throat diameter (Dt) of this project file is 2 mm. The project file contains the geometry and mesh of CD fracture and numerical setting properties for calculating.
DOI: 10.5281/zenodo.8207707
title: Numerical Modeling for Choked Flow of CO2 through Converging-Diverging Fracture

description: These ANSYS archive files were made to investigate the choked flow of CO2 through the converging-diverging (CD) fractures. Here, Aungier-Redlich-Kwong Equation of State is used as an equation of state. The archive files contain the geometry, mesh of each CD fracture and numerical settings properties for calculating. Note that the archive files were created with ANSYS 2020 R1 version.
DOI: 10.5281/zenodo.8260174
title: Numerical Modeling for Choked Flow of CO2 through Converging-Diverging Fracture

description: These ANSYS archive files were made to investigate the choked flow of CO2 through the converging-diverging (CD) fractures. Here, Aungier-Redlich-Kwong Equation of State is used as an equation of state. The archive files contain the geometry, mesh of each CD fracture and numerical settings properties for calculating. Note that the archive files were created with ANSYS 2020 R1 version. Furthermore, .zip file contains sound speed calculation .m MATLAB code and thermodynamic properties of CO2 from ANSYS Fluent. Please see the organizational document file named 'Zenodo Information_Yang and Han.docx'.
DOI: 10.5281/zenodo.7528101
title: Numerical Modeling for Choked Flow of CO2 through Converging-Diverging Fracture

description: These ANSYS archive files were made to investigate the choked flow of CO2 through the converging-diverging (CD) fractures. The archive files contain the geometry, mesh of each CD fracture and numerical settings properties for calculating. Note that the archive files were created with ANSYS 2020 R1 version.
DOI: 10.5281/zenodo.8251401
title: Numerical Modeling for Choked Flow of CO2 through Converging-Diverging Fracture

description: These ANSYS archive files were made to investigate the choked flow of CO2 through the converging-diverging (CD) fractures. Here, Aungier-Redlich-Kwong Equation of State is used as an equation of state. The archive files contain the geometry, mesh of each CD fracture and numerical settings properties for calculating. Note that the archive files were created with ANSYS 2020 R1 version.
DOI: 10.5519/qd.2kwm0jkr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (27147 records)
DOI: 10.5519/qd.ib4lpta9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5519/qd.njr63u46
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (12888 records)
DOI: 10.34724/casd.43.2609.v2
title: Pratiques phytosanitaires en viticulture - 2016

description: L'enquête Pratiques phytosanitaires en viticulture est une enquête réduite à quelques questions de pratiques culturales et axée sur les pratiques phytosanitaires. Elle porte sur des parcelles culturales générées par des sous-parcelles cadastrales. Le Casier Viticole Informatisé (CVI) permet de déterminer la base de sondage. Elle est constituée des sous-parcelles cadastrales du CVI : situées dans les bassins enquêtés, plantées en vignes avec des raisins de cuve (excluant les vignes à raisin de table, les vignes mère de greffon et de porte-greffe), appartenant à une exploitation viti-vinicole active et produisant du vin. Les sous-parcelles cadastrales correspondant à des plantations de moins de trois ans ainsi que celles identifiées comme servant à une production auto-consommée ou à une production de jus de fruit sont exclues de la base de sondage.
DOI: 10.34724/casd.43.296.v2
title: Pratiques phytosanitaires en viticulture - 2010

description: Une enquête réduite à quelques questions de pratiques culturales et axée sur les pratiques phytosanitaires. Cette enquête vise à caractériser les pratiques phytosanitaires plus fréquemment, de manière à obtenir des données dans des situations climatiques et de pression parasitaire différentes de celles observées au cours des enquêtes quinquennales et à produire un indicateur de pression phytosanitaire de référence (Indice de fréquence de traitement).
DOI: 10.34724/casd.65.1206.v3
title: Pratiques culturales en viticulture - 2013-2014

description: L’enquête sur les pratiques culturales des viticulteurs a été réalisée pour la première fois en 2006 par les services statistiques du ministère de l’Agriculture dans le cadre d’une convention conclue entre le ministère de l’Agriculture et de la Pêche, Viniflhor et l’Ifen. Elle complète la version 2006 des enquêtes réalisées sur les grandes cultures. Elle constitue un outil majeur de description des pratiques des viticulteurs.
DOI: 10.34724/casd.65.334.v1
title: Pratiques culturales en viticulture - 2006

description: L’enquête sur les pratiques culturales des viticulteurs a été réalisée pour la première fois en 2006 par les services statistiques du ministère de l’Agriculture dans le cadre d’une convention conclue entre le ministère de l’Agriculture et de la Pêche, Viniflhor et l’Ifen. Elle complète la version 2006 des enquêtes réalisées sur les grandes cultures. Elle constitue un outil majeur de description des pratiques des viticulteurs.
DOI: 10.5281/zenodo.10070094
title: Input files and movie visualizations for convection models discussed in Becker and Fuchs, "Generation of evolving plate boundaries and toroidal flow from visco-plastic damage-rheology mantle convection and continents", manuscript revised for G-Cubed

description: These input files are for the CitcomS software as available on github.com/geodynamics/citcoms and used in the version under commit 2bda530. They can be used to recreate the models discussed in Becker and Fuchs (revised manuscript submitted to G-Cubed, 11/2023), with model codes discussed and listed in Table 1 of the preprint as provided here. We also provide selected animations of the time dependence of model output, referenced to the same model names.
DOI: 10.5281/zenodo.6040055
title: San Francisco Bay Area Kappa

description: This dataset contains....
DOI: 10.5281/zenodo.8289380
title: High Temporal Resolution Records of Hansbreen Ice Flow Velocity for Years 2006-2019

description: This repository contains the datasets of the positions of 16 mass balance stakes, horizontal velocity (m/yr) and accuracy of velocity (m/yr) for Hansbreen, a tidewater glacier in southern Svalbard. Data were derived from GNSS measurements conducted in the period 2006-2019. Stake positions are given in UTM zone 33X, and elevation in geoidal height (EGM96). Additionally, we provide files with annual, summer and winter velocities (m/yr) with a standard deviation of velocity, estimated for the hydrological year. The file „Hansbreen_preprocessing_code_stakes.zip” contains the code used for the velocity estimation.
DOI: 10.6084/m9.figshare.24328975
title: Identifying the external and internal drivers of exchange rate volatility in small open economies

description: Data and code for " Identifying the external and internal drivers of exchange rate volatility in small open economies"
DOI: 10.17632/vdtjzmdgkk.1
title: Ubiquitin receptor PSMD4/Rpn10 is a novel therapeutic target in multiple myeloma

description: Abstract: PSMD4/Rpn10 is a subunit of the 19S proteasome unit that is involved with feeding target proteins into the catalytic machinery of the proteasome. Given that inhibiting the proteasome is a common therapeutic strategy in multiple myeloma (MM), we investigated Rpn10 and found that it is highly expressed in MM cells, compared to PBMCs, and its expression is inversely correlated with overall survival and positively correlated with disease progression in MM patients. Inducible knockout or knockdown of Rpn10 decreased MM cell viability both in vitro and in vivo by triggering the accumulation of polyubiquitinated proteins, MM cell cycle arrest, and MM cell death through caspase-dependent- and unfolded-protein-response-related apoptosis. Proteomic analysis revealed that inhibiting Rpn10 in MM increased autophagy, antigen presentation and the activation of CD4+ T cells and NK cells. We then developed an in vitro AlphaScreen binding assay for high-throughput screening and identified a novel Rpn10 inhibitor, SB699551. Treating MM cell lines, leukemic cell lines, and primary MM patient cells with SB699551 significantly decreased cell viability without affecting the viability of normal PBMCs. SB699551 inhibited the proliferation of MM cells even in the presence of microenvironmental cells and without blocking the catalytic activity of the 20S proteasome unit or the deubiquitinating activity of the 19S unit. Rpn10 blockade by SB699551 triggered MM cell death via similar pathways as the genetic strategy. Xenograft animal models found that SB699551 was well-tolerated, inhibited tumor growth, and prolonged survival. Our data suggests that inhibiting Rpn10 will enhance cytotoxicity and overcome proteasome-inhibitor resistance in MM, providing the basis for further optimization studies of Rpn10 inhibitors for clinical application.
DOI: 10.17632/t2pmyzzt6n.1
title: Ubiquitin receptor PSMD4/Rpn10 is a novel therapeutic target in multiple myeloma

description: PSMD4/Rpn10 is a subunit of the 19S proteasome unit that is involved with feeding target proteins into the catalytic machinery of the proteasome. Given that inhibiting the proteasome is a common therapeutic strategy in multiple myeloma (MM), we investigated Rpn10 and found that it is highly expressed in MM cells, compared to PBMCs, and its expression is inversely correlated with overall survival and positively correlated with disease progression in MM patients. Inducible knockout or knockdown of Rpn10 decreased MM cell viability both in vitro and in vivo by triggering the accumulation of polyubiquitinated proteins, MM cell cycle arrest, and MM cell death through caspase-dependent- and unfolded-protein-response-related apoptosis. Proteomic analysis revealed that inhibiting Rpn10 in MM increased autophagy, antigen presentation and the activation of CD4+ T cells and NK cells. We then developed an in vitro AlphaScreen binding assay for high-throughput screening and identified a novel Rpn10 inhibitor, SB699551. Treating MM cell lines, leukemic cell lines, and primary MM patient cells with SB699551 significantly decreased cell viability without affecting the viability of normal PBMCs. SB699551 inhibited the proliferation of MM cells even in the presence of microenvironmental cells and without blocking the catalytic activity of the 20S proteasome unit or the deubiquitinating activity of the 19S unit. Rpn10 blockade by SB699551 triggered MM cell death via similar pathways as the genetic strategy. Xenograft animal models found that SB699551 was well-tolerated, inhibited tumor growth, and prolonged survival. Our data suggests that inhibiting Rpn10 will enhance cytotoxicity and overcome proteasome-inhibitor resistance in MM, providing the basis for further optimization studies of Rpn10 inhibitors for clinical application.
DOI: 10.48577/jpl.rn2zso
title: Water stress dominate 21st-century tropical land carbon uptake

description: Water stress regulates land-atmosphere carbon dioxide (CO2) exchanges in the tropics; however, its role remains poorly characterized due to the confounding roles of radiation, temperature and canopy dynamics. In particular, uncertainty stems from the relative roles of plant-available water (supply) and atmospheric water vapor deficit (demand) as mechanistic drivers of photosynthetic carbon (C) uptake variability. Using satellite measurements of gravity, CO2 and fluorescence to constrain a mechanistic carbon-water cycle model from 2001–2018, we found that the interannual variability (IAV) of water stress on photosynthetic C uptake was 52% greater than the combined effects of other factprs. Surprisingly, the dominance of water stress on C uptake IAV was greater in the wet tropics (94%) than in the dry tropics (26%). Plant-available water supply and atmospheric demand both contributed to the IAV of water stress on photosynthetic C uptake across the tropics, but the IAV of demand effects was 21% greater than the IAV of supply effects (33% greater in the wet tropics and 6% greater in the dry tropics). We found that the IAV of water stress on C uptake was 24% greater than the IAV of the combination of other factors in the net land-atmosphere C sink in the whole tropics, 26% greater in the wet tropics, and 7% greater in the dry tropics. Given the recent trends in tropical precipitation and atmospheric humidity, our findings indicate that water stress–––from both supply and demand–––will likely dominate the climate response of land C sink across tropical ecosystems in the coming decades.