cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cv4h8d8w2k.1
title: Individual territoriality in lekking species: the case of the Helmeted Manakin

description: Our objectives were to verify whether territorial behaviour occurs in the Helmeted Manakin and to provide a preliminary assessment of this species’ hypothesised social monogamy. Using an experimental approach with simulated territorial intrusions, we demonstrated that males in this species hold individual territories with nesting sites but do not provide parental care, similar to its congener, the Araripe Manakin (Antilophia bokermanni). Males’ responses occurred more aggressively in central areas of territories. Larger home ranges encompassed the smaller defended territories and the male display consists of repeated circular flights within the territory. Our results indicate that the Helmeted Manakin has a polygamous mating system. However, we suggest the species is better classified within the continuum of a resource-defence exploded-lek mating system. The distinct environmental conditions in which the species evolved may have played a significant role in modifying its behaviour, resulting in patterns that deviate from the typical lekking system found among manakins. This study highlights the importance of investigating atypical manakins to further our understanding of alternative reproductive tactics among birds.
DOI: 10.17632/ppkp3t9hbw.1
title: Multiple effects of iron oxides on the adsorption and oxidation of dissolved organic matter by manganese oxides

description: Research data for all tables and figures in the manuscript by Ding et, al to be published by Geochimica et Cosmochimica Acta as "Multiple effects of iron oxides on the adsorption and oxidation of dissolved organic matter by manganese oxides".
DOI: 10.17632/r8wr8wkvxb.1
title: Major element, trace element, and H2O abundances in clinopyroxene phenocrysts and equilibrium melts from the Austral Islands

description: Clinopyroxene phenocrysts crystallized at depth from ocean island basalts record information on magma H2O contents and may be less prone to degassing processes than quenched glasses or melt inclusions formed at lower pressures. Here we report major and trace element and H2O abundances in clinopyroxene phenocrysts from Austral Island basalts, as well as calculated melt compositions in equilibrium with the phenocrysts. These data provide constraints on pre-eruptive magmatic water contents in basaltic magmas from an ocean island setting. This dataset also provides information on the calibration curves used in SIMS analysis of the phenocryst water contents, and estimated cpx/melt partition coefficients used to calculate melt compositions.
DOI: 10.17632/x3jmhhs3st.1
title: Supplemental figures for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: The six supplemental figures for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast." Data from experiments are from live-cell and fixed-cell imaging experiments and yeast growth assays.
DOI: 10.17632/5g8389w4y9.1
title: Carbon Emissions and related factors in China

description: The dataset includes CO2 emissions per capita[CO2], per capita real GDP[GDP], Service sector value added (% of GDP)[IND], Energy use in 10,000 tons of standard coal equivalent relative to GDP[EI], Share of clean energy in total primary energy consumption[CE], Share of the urban population in total population[URB], Share of increased population aged 60 years and above in the total population[AGING]. The unit of the observation is China. The data period is from 1960 to 2018.
DOI: 10.17632/wdzdm7nx7j.1
title: Data for: What creates the arc sulfur isotopic signature? Insights from sulfur isotopes from mantle wedge to crustal magma reservoirs beneath Bezymianny volcano, Kamchatka

description: Supplementary data for the manuscript by Davydova V.O., Shcherbakov V.D., Balcone-Boissard H., Deloule E. and Yapascurt V.O. "What creates the arc sulfur isotopic signature? Insights from sulfur isotopes from mantle wedge to crustal magma reservoirs beneath Bezymianny volcano, Kamchatka", submitted to Geochimica et Cosmochimica Acta
DOI: 10.17632/2hfrktn359.1
title: Funeral practices of the Final Bronze Age in the southern Trans-Urals: between cultural norm and deviation. Supplementary data

description: Appendix 1 presents a detailed archaeological context and the history of the study of the published materials. Appendix 2 contains data on the physical anthropology of the individual from the burial. Appendix 3 highlights the results of the analysis of the isotope ratios of strontium of an individual in comparison with background values. Appendix 4 presents generalized data on the burials of the Final Bronze Age of the Southern Trans-Urals.
DOI: 10.17632/2hfrktn359.2
title: Funeral practices of the Final Bronze Age in the southern Trans-Urals: between cultural norm and deviation. Supplementary data

description: Appendix 1 presents a detailed archaeological context and the history of the study of the published materials. Appendix 2 contains data on the physical anthropology of the individual from the burial. Appendix 3 highlights the results of the analysis of the isotope ratios of strontium of an individual in comparison with background values. Appendix 4 presents generalized data on the burials of the Final Bronze Age of the Southern Trans-Urals.
DOI: 10.17632/y48ztkjpgy.2
title: Capital Budgeting, Uncertainty, and Misallocation - Source Files

description: Source files for "Capital Budgeting, Misallocation, and Uncertainty". We have two sets of code/files:

1. On site code files to process Ministry of Finance (MoF) data, along with accompanying pseudo-data
2. MATLAB code that may be run anywhere and will produce numbers from our paper.

We also provide an extensive readme, inclusive of a data dictionary, instructions for data access, and documentation for our code files.
DOI: 10.17632/xjz27scmjd.1
title: Transcriptomic data of BT549 triple negative breast cancer cells treated with 20 μM NU7441,a DNA-dependent kinase inhibitor

description: DNA-dependent protein kinase catalytic subunit (DNA-PKcs) is a multifunctional serine-threonine protein kinase that plays pleiotropic roles in cancer.NU7441 is a specific DNA-PKcs inhibitor.We investigated the effect of the DNA-dependent kinase (DNA-PK) inhibitor, NU7441, on the transcriptome of BT549 triple negative breast cancer (TNBC) cells.Total RNA extracted from NU7441 or vehicle-treated cells was processed for preparation of sequencing libraries . Assessment of read quality was performed using fastqc tool. Trimming and filtering low-quality reads were performed using fastp. Reads were aligned by hisat2. SAM files were converted to BAM files using Samtools. Mapped reads were quantified using featureCounts.The RNA sequencing results were also subjected to gene differential expression analysis, Gene Ontology (GO) analysis and KEGG pathway analysis. After NU7441 treatment, total number of 2045 differential genes were selected according to |log2(FoldChange)| &gt;= 1 & padj&lt;= 0.05, among which 1365 genes were down-regulated and 680 genes were up-regulated. The differential genes in pattern recognition receptors (PRRs) immune responses signals, including NOD-like receptor signaling, Toll-like receptor signaling, RIG-I-like receptor signaling and Cytosolic DNA-sensing pathways were noted in this paper .
DOI: 10.17632/rjpjyykxvf.3
title: Forcecasted MSW generation and Economic damage in SSA

description: This data is related to the research paper, "Mitigating greenhouse gas emissions from municipal solid waste in Sub-Saharan Africa via sustainable waste management: An economic benefit assessment." The data corresponds to forecasts of electricity generation and GHG emission reductions in 44 sub-Saharan African countries. This includes the potential for energy generation from organic MSW as well as the economic viability of waste-to-energy projects in Sub-Saharan Africa. This data also includes the environmental costs of improper waste management. Forecasted data on MSW generation and methane emissions from landfill sites are estimated for 100 years (from 2000 to 2100). This data is estimated using data from trusted official documents from the IPCC, IMF, World Bank, and United Nations, and is supplemented as needed with information from literature and country-specific databases. The data showed how important it is for Sub-Saharan Africa to switch to using waste as a source of energy and to use waste in a more sustainable way.
DOI: 10.17632/69tfsgmx88.1
title: Are anti-sticky costs endemic in the Arabian Gulf Region?

description: This dataset was employed to investigate the endemism of anti-sticky costs in emerging economies of the Gulf Co-operation Council (GCC) countries by measuring the degree of adjustment between operating revenues and costs for companies in those countries. It includes panel data on operating expenses, sales revenue, current total assets, staff wages and salaries, and GDP in a sticky cost model derived from a Cobb-Douglas cost function to measure the percentage change in operating expenses due to a 1% increase or decrease in sales revenue. Our results from analysis the data in this dataset did not find evidence of sticky costs in four of the five countries.
DOI: 10.17632/chpmt7dfsj.2
title: Beware of hitchhiking ticks? Clarifying the variable roles of bird species in tick movement along migratory routes

description: Ticks are blood-feeding parasites which act as major vectors for various pathogenic microorganisms affecting both animal and human health. Hard ticks are known to move passively (i.e. ‘hitchhike’) on migratory birds as they transit between breeding and non-breeding grounds. This potentially leads to exchange and establishment of non-endemic tick species in novel environments. However, it is not yet clear if all migratory bird taxa play an equal role in movement of specific tick species, especially outside of medically important tick taxa. To clarify these interactions, we performed a systematic literature review regarding primary data of ticks moving on migratory birds within the African–Western Palearctic flyways. In total, 35 studies were found which showed 123 bird species from 37 families and 12 orders connected to potential movement of 30 tick species representing six genera (Amblyomma, Dermacentor, Haemaphysalis, Hyalomma, Ixodes, Rhipicephalus). Most tick species did not show high abundance for any bird species, or, if they did, only on very few. Only Ixodes ricinus and Hyalomma marginatum were estimated to be carried at above average burdens by multiple bird species. This could indicate an increased likelihood of these species to be moved during migration. Specific tick species or whole genera were only found in certain migratory seasons as expected based on their geographic distributions. Even so, species found in both migratory seasons did not differ in their estimated abundances on birds between seasons. This result could suggest that tick abundance on migrating birds is not always a direct result of geographic distribution and may suggest an understudied importance of stopover sites towards potential tick introduction or turnover. Taken together, the results presented here provide guiding information for future analyses integrating individual level variation into the current understanding of tick movement with migratory birds.

Data included here are the studies and the raw collected data in relation to the above mentioned project.
DOI: 10.17632/3sn4yz8hhv.1
title: LTBR acts as a novel immune checkpoint of tumor-associated macrophages for lung adenocarcinoma immunotherapy

description: Background: Tumor-associated macrophages (TAMs) has been reported to mediate the resistance of LUAD patients to ICI therapy. However, its underlying mechanisms and whether TAMs could be promising targets to overcome the non-response after ICI application remain to be unveiled. 
Methods: Immune multi-omics analysis was implemented with a large clinical cohort encompassing 1045 LUAD cases to screen out potential immune checkpoints. scRNA-seq analysis revealed their distribution in LUAD immune cells. The key molecule and related mechanisms were investigated in vitro and in vivo. Clinical verification in ICI therapy cohorts and TAMs-targeted delivery system had been performed for further clinical translation.
Findings: LTBR, as a potential immune checkpoint, was screened out. Its high expression, duplication and low methylation were corelated with LUAD unfavorable survival. scRNA-seq and FACS analysis showed the highest expression of LTBR in TAMs. Moreover, TAM-targeted inhibition of LTΒR disrupted TISM following with CD8+ T cell boost as well as G-MDSC and M2-like TAM reduction, especially improved the therapeutic effect of ICI. Further studies showed that LTΒR maintained TAM immunosuppressive activity and M2 phenotype by non-canonical NF-kB signaling and Wnt/beta-catenin signaling. Clinical investigation indicated that LTΒR could predict LUAD stages, immunotherapy responses and clinical outcomes after ICI treatment.
Conclusions: Through integrative analysis of immune Multi-Omics and ScRNA-seq data (iMOS), our study develops an immune-checkpoint discovery pipeline, and identifies LTBR as a novel immune checkpoint of TAMs that orchestrates TISM through non-canonical NF-kB and Wnt/beta-catenin signaling. Finally, we propose a promising strategy by targeting LTBR+ TAMs for improving the effect of ICI therapy.
DOI: 10.17632/brkjcrhzsv.1
title: Rats that learn to vocalize for food reward emit longer and louder appetitive calls and fewer short aversive calls; Wardak et al.

description: Raw data from rats’ training to vocalize in 50-kHz ultrasonic calls (50-kHz ultrasonic vocalizations, USV) for food reward in operant conditioning. Rats were trained in six different ways (protocols 1-6), percent of rewards obtained and sessions’ duration was measured (Fig. S1). Also, percent of successful nosepokes and session duration were measured in the control experiment (Fig. S1). Based on USV-training sessions, the rats were divided into potential learners (20%) and non-learners; and into further sub-groups. Measured were: percent of rewards, call rate, session duration (Fig. 3); percent of rewarded USV in all USV, and in all 50-kHz calls (Fig. 4); duration and amplitude of 50-kHz USV (Fig. 5); and percentage of short 22-kHz USV in all USV (Fig. 6).
DOI: 10.17632/dc8pks4zvw.1
title: Figure 4 for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: Sterol distribution is altered in css1 mutant cells
DOI: 10.17632/pjtyzgxwwp.4
title: Isotopically heavy sulfur in nephelinite from Etinde, Cameroon Volcanic Line

description: We present a sulfur isotope dataset for lavas from Etinde, a volcano of the Cameroon Volcanic Line. We measured sulfur isotope compositions with an aim to characterise the geochemical reservoir the sulfur came from. We also provide some whole rock geochemical data for context.

Major-element compositions were determined by X-Ray Fluorescence (XRF) spectrometry at the University of Edinburgh, and trace element concentrations were determined by Inductively-Coupled Plasma Mass Spectrometry (ICP-MS) at the Scottish Universities Environmental Research Centre (SUERC). Sulfur concentrations were measured using combustion ion-chromatography at Universität Tübingen. Sulfate phases were dissolved in cold HCl at the University of Edinburgh using a method proposed by Renzulli et al., (1998) and solutions were analysed at the stable isotope facility at SUERC. Sulfide samples were prepared and analysed at the University of St Andrews following Canfield et al., 1986. Sulfide δ34S was calculated by mass-balance from measured acid-volatile and chromium-reducible sulfide components. Mass balance was also used to calculate bulk δ34S from sulfide and sulfate δ34S. 

Bulk δ34S which best represents Etinde magmatic values ranges from +3.7‰ to +6.3‰, a heavier signature than MORB and most other alkaline igneous rocks. We show that the most mafic Etinde samples are highly degassed, a process which affected their S-isotope composition. We suggest that assimilation of evaporite in shallow magma reservoirs or the involvement of a metasomatic carbonate component in the mantle source may explain these positive values.
DOI: 10.17632/nt6xb39yrz.1
title: Figure 5 for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: Mutations in the Ppk14 signaling pathway suppress css1-3
DOI: 10.17632/k8t3gnx9h6.1
title: Supplementary files DIB-D-23-00350

description: Detailed additional description of the cited dataset concerning duplicates and other issues described in detail in Letter to the Editor: Re: “[Dataset of breast ultrasound images by W. Al-Dhabyani, M. Gomaa, H. Khaled & A. Fahmy, Data in Brief, 2020, 28, 104863]”
DOI: 10.17632/h9g8t766df.1
title: A Nonlinear Multi-Period Hydrothermal Optimal Power Flow Model for Hydropower Systems: Datasets and Supplementary Material

description: The datasets and supplementary material presented in this companion document is a fundamental part of the paper "A Nonlinear Multi-Period Hydrothermal Optimal Power Flow Model for Hydropower Systems'' . In this companion document, we start with the data of classical IEEE test systems, whose generation matrices are composed basically by thermal generation units, and propose a systematic alteration of such generation matrices so as to represent fictitious hydropower systems, where hydro generation comprises the vast majority of the system capacity. Despite the fact that the adapted systems, whose data are described here, are artificially constructed, these systems are based on real hydro data for generation subsystems of the Brazilian hydropower system. Also, the data used for the transmission system are taken from realistic IEEE systems, which involve the IEEE 24- 118- and 300-bus systems. Therefore, the main task here is to adapt these original IEEE systems so as to replace thermal units by hydroelectric units, but keeping the hydraulic and network characteristics of the original systems. The complete information involving all tables shown in this document are also provided as supplementary material, given by appended Excel archives.
DOI: 10.17632/48y5wj8jhg.1
title: Figure 7 for "Elevated levels of the sphingolipid MIPC disrupt the coordination of cell growth with cell wall formation in fission yeast"

description: Cells with disrupted glycosylation but not GPI anchor addition phenocopy css1-3
DOI: 10.17632/wjd9t4k7g4.1
title: Dataset of dentin biomodifiers and odontoblast differentiation

description: Raw data on the effects of dentin biomodifiers on viability and differentiation into odontoblast phenotype in a dentin-human dental pulp stem cell co-culture model. The first sheet, titled "LDH Cytotoxicity," contains raw data from the evaluation of the cytotoxicity of dentin biomodifiers (0.2% chlorhexidine, 1% glutaraldehyde, 6.5% proanthocyanidin, and 600 µM myricetin). Cytotoxicity was measured by assessing the lactate dehydrogenase (LDH) released into the medium using spectrophotometry. The second sheet, titled "qPCR Odontogenic Markers," contains data on the expression of genes encoding Collagen Type I, dentin sialophosphoprotein, matrix extracellular phosphoglycoprotein, and osteopontin, evaluated by RT-qPCR. Additionally, the third sheet, titled "Alizarin Red," contains raw data from the evaluation of extracellular matrix mineralization using the alizarin red staining method, with absorbance quantified by spectrophotometry.
DOI: 10.17632/9bmhxgdsk2.2
title: Uniaxial Compressive Strength Testing of Hollow Concrete Block Prisms

description: This database showcases experimental results obtained by testing prisms constructed from hollow concrete blocks under uniaxial compression. Prisms with 2, 3, and 4 courses were tested, employing mortar placement in both the net area and on the lateral faces.
The processed results are presented in Excel sheets, featuring stress-strain graphs. The efforts were computed based on the gross and net area for prisms with mortar placed in full-shell and the effective area for prisms with mortar placed on the face-shell-bedding.
Moreover, accompanying photos from the tests are included, enabling observation of the specimen failures achieved during the experiments.
DOI: 10.17632/9bmhxgdsk2.1
title: Uniaxial Compressive Strength Testing of Hollow Concrete Block Prisms

description: This database showcases experimental results obtained by testing prisms constructed from hollow concrete blocks under uniaxial compression. Prisms with 2, 3, and 4 courses were tested, employing mortar placement in both the net area and on the lateral faces.
The processed results are presented in Excel sheets, featuring stress-strain graphs. The efforts were computed based on the gross and net area for prisms with mortar placed in full-shell and the effective area for prisms with mortar placed on the face-shell-bedding.
Moreover, accompanying photos from the tests are included, enabling observation of the specimen failures achieved during the experiments.
DOI: 10.17632/wc4zfr4nrw.1
title: Figures for "Membrane binding of endocytic myosin-1s is inhibited by a class of ankyrin repeat proteins"

description: all raw data for the associated paper
DOI: 10.17632/frtcbvgg8k.1
title: Stigma Underlies the Mental Health Burden of Pediatric Atopic Dermatitis: A Cohort Study

description: Background: The role of stigma in childhood atopic dermatitis (AD) has received little attention. 
Objective: To validate a new self-reported tool to measure pediatric stigma and correlate stigma with physical, mental, and social domains of health in pediatric patients with AD. 
Methods: In a cohort study, 180 children with AD 8-17 years old and a parent enrolled and completed the PROMIS Pediatric Stigma (PPS)-Skin questionnaire and other patient- and proxy-reported measures. 
Results: PPS-Skin showed strong construct and convergent validity, as well as responsiveness to changes 6-12 months after enrollment. Stigma scores were strongly correlated with scores for itch and moderately with several other physical and psychosocial markers of health, especially sleep-related impairment, depression, and psychological stress. Almost 30% had at least moderately increased scores for depression and anxiety. Proxy reports correlated moderately to strongly with all corresponding child measures, but parents tended to overestimate the burden of itch. Correlations between PPS-Skin and other measures of psychosocial health persisted from initial visit to month 12, demonstrating responsiveness to change.
Limitations: Single-center study
Conclusion: PPS-Skin and its associated PPS-Skin-Proxy tool are valid for use in children with AD and valuable additions to studying childhood mental health.
DOI: 10.17632/j4mhw5zrrp.1
title: dataset_Dianchi Lake_NO2

description: The dataset for the article "Daytime Production of Airborne Pollutants Including Brown Carbon by NO2 Interaction with Surface Microlayer of Lake Water in Southwestern China", including all experimental data utilized in the article, as well as data employed for plotting. Briefly, the experiments mainly consists of the reaction of Dianchi Lake microsurface water samples with different concentrations of nitrogen dioxide under light and different temperature conditions. The dataset contains information of the gas-phase products generated from the above reactions.