cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.13114529
title: Isotropic 3D electron microscopy reference data of fan-shaped body of a 5 day-old male Drosophila (jrc_fly-fsb-1)

description: Understanding cellular architecture is essential for understanding biology. Electron microscopy (EM) uniquely visualizes cellular structure with nanometer resolution. However, traditional methods, such as thin-section EM or EM tomography, have limitations inasmuch as they only visualize a single slice or a relatively small volume of the cell, respectively. Here, we overcome these limitations by long-term imaging whole cells and tissues via the enhanced Focus Ion Beam Scanning Electron Microscopy (FIB-SEM) platform in high resolution mode with month-long acquisition duration. We use this approach to generate reference 3D image data sets at 4-nm isotropic voxels. Together with subsequent segmentation, we hope to create a reference library to explore comprehensive quantification of whole cells and all their constituents, thus addressing questions related to cell identities, cell morphologies, cell-cell interactions, as well as intracellular organelle organization and structure.<br><b>Fan-shaped body,</b> the largest substructure of the central complex controls various behaviors of insects. To understand brain functions, knowing neuron connectivity at synapse level is critical. High-resolution FIB-SEM images with large volume provide significant values in both identifying synaptic structures and tracing fine neuronal profiles. The detailed examination of synapses and unique intracellular features could add important insights to the understanding of the types of synaptic vesicles, synaptic polarity and neuron’s property.<br>Sample: Fan-shaped body of a 5 day-old adult male Drosophila (Genome type: iso Canton S G1 x w1118 iso 5905).Protocol: Chemical Fixation, ORTO-Lead-EPTA staining via progressive lowering of temperature and low temperature staining (PLT-LTS) heavy metal enhancement protocol.Contributions: Sample provided by Zhiyuan Lu (HHMI/Janelia), prepared, imaged and post-processed by Song Pang (HHMI/Janelia), with post-processing by C. Shan Xu (HHMI/Janelia).Dataset ID: jrc_fly-fsb-1Final voxel size (nm): 4.00 x 4.00 x 4.00 (X, Y, Z)Dimensions (µm): 45 x 56 x 45 (X, Y, Z)Acquisition date: 2019-09-14Dataset URL: s3://janelia-cosem-datasets/jrc_fly-fsb-1/jrc_fly-fsb-1.zarr/recon-1/em/Visualization Website: https://openorganelle.janelia.org/datasets/jrc_fly-fsb-1<br>Publication: “Isotropic 3D electron microscopy reference library of whole cells and tissues” by C. Shan Xu et al. (in preparation)<br>
DOI: 10.25378/janelia.13114529.v1
title: Isotropic 3D electron microscopy reference data of fan-shaped body of a 5 day-old male Drosophila (jrc_fly-fsb-1)

description: Understanding cellular architecture is essential for understanding biology. Electron microscopy (EM) uniquely visualizes cellular structure with nanometer resolution. However, traditional methods, such as thin-section EM or EM tomography, have limitations inasmuch as they only visualize a single slice or a relatively small volume of the cell, respectively. Here, we overcome these limitations by long-term imaging whole cells and tissues via the enhanced Focus Ion Beam Scanning Electron Microscopy (FIB-SEM) platform in high resolution mode with month-long acquisition duration. We use this approach to generate reference 3D image data sets at 4-nm isotropic voxels. Together with subsequent segmentation, we hope to create a reference library to explore comprehensive quantification of whole cells and all their constituents, thus addressing questions related to cell identities, cell morphologies, cell-cell interactions, as well as intracellular organelle organization and structure.<br><b>Fan-shaped body,</b> the largest substructure of the central complex controls various behaviors of insects. To understand brain functions, knowing neuron connectivity at synapse level is critical. High-resolution FIB-SEM images with large volume provide significant values in both identifying synaptic structures and tracing fine neuronal profiles. The detailed examination of synapses and unique intracellular features could add important insights to the understanding of the types of synaptic vesicles, synaptic polarity and neuron’s property.<br>Sample: Fan-shaped body of a 5 day-old adult male Drosophila (Genome type: iso Canton S G1 x w1118 iso 5905).Protocol: Chemical Fixation, ORTO-Lead-EPTA staining via progressive lowering of temperature and low temperature staining (PLT-LTS) heavy metal enhancement protocol.Contributions: Sample provided by Zhiyuan Lu (HHMI/Janelia), prepared, imaged and post-processed by Song Pang (HHMI/Janelia), with post-processing by C. Shan Xu (HHMI/Janelia).Dataset ID: jrc_fly-fsb-1Final voxel size (nm): 4.00 x 4.00 x 4.00 (X, Y, Z)Dimensions (µm): 45 x 56 x 45 (X, Y, Z)Acquisition date: 2019-09-14Dataset URL: s3://janelia-cosem-datasets/jrc_fly-fsb-1/jrc_fly-fsb-1.zarr/recon-1/em/Visualization Website: https://openorganelle.janelia.org/datasets/jrc_fly-fsb-1<br>Publication: “Isotropic 3D electron microscopy reference library of whole cells and tissues” by C. Shan Xu et al. (in preparation)<br>
DOI: 10.17632/5wvv3fpwg3.1
title: Supplementary data for Lu et al "Effect of wildfires on soil nutrients, boron and lithium isotopes"

description: Supplementary data for manuscript Lu et al "Effect of wildfires on soil nutrients, boron and lithium isotopes".
DOI: 10.15468/dl.6ynwrv
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Occurrence evidence)",
 "Geometry POLYGON((90 0,180 0,180 70,90 70,90 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aristeidae"
 ]
}

 The dataset includes 134 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013591-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/4n263zm8sk
title: miR-29b Target Prediction

description: Output of miR-29b Target Prediction using TargetScan
DOI: 10.17632/4n263zm8sk.1
title: miR-29b Target Prediction

description: Output of miR-29b Target Prediction using TargetScan
DOI: 10.15468/dl.wenng2
title: Occurrence Download

description: A dataset containing 876 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Registro de varamientos de tortugas marinas en las Illes Balears"
 ]
}

 The dataset includes 876 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006575-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s59g4
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemicycla modesta (A.Férussac, 1822)"
 ]
}

 The dataset includes 51 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006576-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14605519
title: (14)-Strobl2025A-DS0004 – SLICE-1 – Tribolium castaneum AGOC{ATub'Cytok8°NB-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (14)-Strobl2025A-DS0004 – SLICE-1 – Tribolium castaneum AGOC{ATub'Cytok8°NB-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.5281/zenodo.13742311
title: Dispersion curves for average and individual cratons used in Davison et al, 2024

description: A collection of surface-wave dispersion curves, Rayleigh and Love, used for modelling cratonic regions in Davison et al, 2024. These regions are:

 

-A global average across all cratons, as described in Civiero et al. (2024);

-Interstation measurements for the Baltic, Guyana, Congo and Western Australian cratons, as described in Lebedev et al. (2009);

-Regional measurements for the Southwest Kaapvaal, Central Kaapvaal, Northern Kaapvaal and Limpopo Belt, as described in Ravenna et al. (2018).
DOI: 10.5281/zenodo.13742312
title: Dispersion curves for average and individual cratons used in Davison et al, 2024

description: A collection of surface-wave dispersion curves, Rayleigh and Love, used for modelling cratonic regions in Davison et al, 2024. These regions are:

 

-A global average across all cratons, as described in Civiero et al. (2024);

-Interstation measurements for the Baltic, Guyana, Congo and Western Australian cratons, as described in Lebedev et al. (2009);

-Regional measurements for the Southwest Kaapvaal, Central Kaapvaal, Northern Kaapvaal and Limpopo Belt, as described in Ravenna et al. (2018).
DOI: 10.6084/m9.figshare.30456452
title: Dataset for "Visualizing interaction-driven restructuring of quantum Hall edge states"

description: Source data for "Visualizing interaction-driven restructuring of quantum Hall edge states"<br>DOI: 10.1038/s41586-025-09858-3<br><br>See readme.txt for more details of the dataset
DOI: 10.6084/m9.figshare.30456452.v2
title: Dataset for "Visualizing interaction-driven restructuring of quantum Hall edge states"

description: Source data for "Visualizing interaction-driven restructuring of quantum Hall edge states"<br>DOI: 10.1038/s41586-025-09858-3<br><br>See readme.txt for more details of the dataset
DOI: 10.6084/m9.figshare.30456452.v1
title: Dataset for "Visualizing interaction-driven restructuring of quantum Hall edge states"

description: Source data for "Visualizing interaction-driven restructuring of quantum Hall edge states"
DOI: 10.15468/dl.fe4t28
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuberculobasis arara",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002900-251120083545085/datasets/export for details.
DOI: 10.15468/dl.ve2dev
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Algeria",
 "TaxonKey is Falco peregrinus",
 "Year 2000-2025"
 ]
}

 The dataset includes 398 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002901-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13822088
title: All FDA Drugs (United States, 1939-Present)
DOI: 10.15468/dl.7eg4a7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Lontra canadensis",
 "StateProvince is one of (Texas, North Dakota, South Dakota, Wyoming, Kansas, Nebraska, Oklahoma, New Mexico, Montana, Colorado)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002902-251120083545085/datasets/export for details.
DOI: 10.15468/dl.cmeybz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuberculobasis karitiana",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002903-251120083545085/datasets/export for details.
DOI: 10.18738/t8/fvjyls
title: CIAR project

description: Renewal of alcohol-seeking behavior in male and female rats
DOI: 10.15468/dl.p9npeh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuberculobasis macuxi",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002905-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jz3apr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Quercus alba",
 "StateProvince is one of (Texas, North Dakota, South Dakota, Wyoming, Kansas, Nebraska, Oklahoma, New Mexico, Montana, Colorado)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002904-251120083545085/datasets/export for details.
DOI: 10.15468/dl.s569wh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tuberculobasis tirio",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002906-251120083545085/datasets/export for details.
DOI: 10.15468/dl.hee32k
title: Occurrence Download

description: A dataset containing 123438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is Gleditsia triacanthos"
 ]
}

 The dataset includes 123438 records from 553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002887-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnat8c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tukanobasis corbeti",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002907-251120083545085/datasets/export for details.
DOI: 10.15468/dl.p5j7kc
title: Occurrence Download

description: A dataset containing 1623 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Poland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Triturus cristatus"
 ]
}

 The dataset includes 1623 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002908-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.puu57d
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zonophora nobilis",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002909-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17676282
title: IODP Expedition 321 Natural gamma radiation

description: Natural gamma radiation (NGR) data in the ~0.1 to 3.0 MeV range were measured using eight custom-designed sodium iodide (thallium) [NaI(Tl)] detectors arranged along the core measurement axis at 20 cm intervals. The NGR system uses layers of passive shielding (lead) and active shielding (plastic scintillators and coincidence electronics) to reduce the cosmic-ray signal for low-count analysis of sediment core sections and to obtain the maximum signal-to-noise ratio. Data are reported on a total counts per second basis and the raw spectral files are available as compressed files for later analysis.
DOI: 10.5281/zenodo.17676281
title: IODP Expedition 321 Natural gamma radiation

description: Natural gamma radiation (NGR) data in the ~0.1 to 3.0 MeV range were measured using eight custom-designed sodium iodide (thallium) [NaI(Tl)] detectors arranged along the core measurement axis at 20 cm intervals. The NGR system uses layers of passive shielding (lead) and active shielding (plastic scintillators and coincidence electronics) to reduce the cosmic-ray signal for low-count analysis of sediment core sections and to obtain the maximum signal-to-noise ratio. Data are reported on a total counts per second basis and the raw spectral files are available as compressed files for later analysis.
DOI: 10.5281/zenodo.17676280
title: IODP Expedition 321 Magnetic susceptibility (whole round)

description: Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C loop. As volume of the sample is not controlled for this experiment, susceptibility units are recorded in instrument units and are not volume-corrected.
DOI: 10.5281/zenodo.17676279
title: IODP Expedition 321 Magnetic susceptibility (whole round)

description: Magnetic susceptibility was measured on whole-round sections (and rarely section halves) on the Whole-Round Multisensor Logger (WRMSL) and/or Special Task Multisensor Logger (STMSL) using a Bartington MS2 meter and a 90 mm or 80 mm MS2C loop. As volume of the sample is not controlled for this experiment, susceptibility units are recorded in instrument units and are not volume-corrected.
DOI: 10.5281/zenodo.17676275
title: IODP Expedition 321 Photomicrographs

description: Microscopic images of discrete samples were acquired using stereo and upright light microscopes and captured on digital cameras. Image files were uploaded along with a brief description and a record of the microscopic and lighting conditions when the image was taken.
DOI: 10.5281/zenodo.17676276
title: IODP Expedition 321 Photomicrographs

description: Microscopic images of discrete samples were acquired using stereo and upright light microscopes and captured on digital cameras. Image files were uploaded along with a brief description and a record of the microscopic and lighting conditions when the image was taken.
DOI: 10.5281/zenodo.17676274
title: IODP Expedition 321 Moisture and Density

description: Moisture and density (MAD) data were acquired on ~10 mL sediment or rock samples by measuring three out of four material parameters: wet (saturated) mass, wet volume, dry mass, and/or dry volume after 24 h drying in a convection oven at 105 degrees C. From the moisture and volume measurements, the following phase relationships are calculated: wet and dry water content, wet bulk density, dry bulk density, grain density, porosity, and void ratio. The combination of measurements is defined by the submethod chosen: A, B, C, or D. Wet (A, B, or C) and dry (A, B, C, or D) mass is determined using motion-compensated balances.  Wet volume is determined either by helium pycnometry (A) or by the sample's geometric dimensions using calipers (A or D).  Dry volume (C or D) is measured by helium pycnometry.  Submethods A and B are not recommended by IODP.  Submethod C is suitable for saturated materials such as fine-grained sediments.  Submethod D is suitable for unsaturated porous material such as certain limestones and basalts.
DOI: 10.5281/zenodo.17676273
title: IODP Expedition 321 Moisture and Density

description: Moisture and density (MAD) data were acquired on ~10 mL sediment or rock samples by measuring three out of four material parameters: wet (saturated) mass, wet volume, dry mass, and/or dry volume after 24 h drying in a convection oven at 105 degrees C. From the moisture and volume measurements, the following phase relationships are calculated: wet and dry water content, wet bulk density, dry bulk density, grain density, porosity, and void ratio. The combination of measurements is defined by the submethod chosen: A, B, C, or D. Wet (A, B, or C) and dry (A, B, C, or D) mass is determined using motion-compensated balances.  Wet volume is determined either by helium pycnometry (A) or by the sample's geometric dimensions using calipers (A or D).  Dry volume (C or D) is measured by helium pycnometry.  Submethods A and B are not recommended by IODP.  Submethod C is suitable for saturated materials such as fine-grained sediments.  Submethod D is suitable for unsaturated porous material such as certain limestones and basalts.
DOI: 10.15468/dl.ts5nc7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zonophora wucherpfennigi",
 "DecimalLongitude is not null",
 "DecimalLatitude is not null"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002910-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17537703
title: Computed Dataset of Viscoelastic Metastructures for Vibration Attenuation

description: This dataset contains all the necessary data to retrieve the vibration attenuation performance of mechanical metastructures generated using shape grammar rules. The data should be interpreted as follows:

The dataset_data file includes both the geometrical parameters of each metastructure and their corresponding mechanical performance metrics, such as mass ratio and resonance frequency. On a separate sheet, it also provides the transmissibility vectors for each structure and the corresponding frequency range used in the study.

The design_explorer folder contains the geometry images along with their transmissibility plots, as well as a CSV file. All of these files must be integrated into the associated Python script available in the folder MetaExplorer to enable interactive visualization using the Design Explorer tool applied to the metastructures.
DOI: 10.5281/zenodo.17643955
title: Computed Dataset of Viscoelastic Metastructures for Vibration Attenuation

description: This dataset contains all the necessary data to retrieve the vibration attenuation performance of mechanical metastructures generated using shape grammar rules. The data should be interpreted as follows:

The dataset_data file includes both the geometrical parameters of each metastructure and their corresponding mechanical performance metrics, such as mass ratio and resonance frequency. On a separate sheet, it also provides the transmissibility vectors for each structure and the corresponding frequency range used in the study.

The design_explorer folder contains the geometry images along with their transmissibility plots, as well as a CSV file. All of these files must be integrated into the associated Python script available in the folder MetaExplorer to enable interactive visualization using the Design Explorer tool applied to the metastructures.
DOI: 10.5281/zenodo.17676293
title: IODP Expedition 321 P-wave velocity logger (whole round)

description: P-wave velocity data were measured on whole-round sections on the Whole-Round Multisensor Logger (WRMSL) using pairs of piezoelectric transducers mounted on a caliper system. Measurements may be affected by degassing of pore fluid and microfracturing during core recovery. Report includes P-wave velocity in x-y plane and distance and traveltime between transducers.