cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12291836
title: Additional file 1 of Transcriptomic analysis of poco1, a mitochondrial pentatricopeptide repeat protein mutant in Arabidopsis thaliana

description: Additional file 1: Table S1, Table S2 and Table S3. List of differentially expressed genes. Differentially expressed genes in poco1 in pre-inflorescence-inflorescence, inflorescence-flowering and inflorescence-inflorescence (fold changes either ≥2 or ≤ − 2 FDR cutoff &lt; 0.05).
DOI: 10.3886/icpsr06562.v1
title: Public Health on the Agenda of Counties, 1993: [United States]
title: Version 1

description: This survey queried heads of county councils and commissions, elected county executives, county administrators, and county health officers to explore policy development and the interaction between counties and public health agencies. Major areas investigated were the amount of county activity initiated by community groups seeking county action regarding public health and other county functions, most important county problems and policy priorities, effectiveness of the county health department, functions performed by the public health agency in the county, reorganization of the health department, level of advocacy by the county board of health for public health issues, type of statutory authority of the board of health, administration of state health programs by the county health agency, activities of the head of the county health department including interactions with the community and media, the success of county departments in obtaining increased funding, level of county governing board member support for increased funding, change in total county budget during year, change in local contribution to the public health budget, and county officials' training in medicine or health care. Demographic information includes education, education major, degrees held, years in position, gender, year of birth, and ethnicity.
description: Datasets: 
 
 DS0: Study-Level Files 
 DS1: Raw Data File 
 DS2: SPSS Export File
description: All United States counties or county-equivalent jurisdictions to which an identified public health department reports.
description: Stratified random sample, giving more weight to counties with large populations. Only counties with public health departments were eligible for inclusion. Excluded were counties in Maine, New Hampshire, Vermont, Massachusetts (except Barnstable), Rhode Island, Connecticut, Delaware, South Dakota, Alaska (except North Slope), and Hawaii.
DOI: 10.6084/m9.figshare.20156782
title: Additional file 2 of Ectopic expression of a combination of 5 genes detects high risk forms of T-cell acute lymphoblastic leukemia

description: Additional file 2.
DOI: 10.6084/m9.figshare.23827016
title: Additional file 1 of Comparative transcriptome findings reveal the neuroinflammatory network and potential biomarkers to early detection of ischemic stroke

description: Additional file 1.
DOI: 10.6084/m9.figshare.23826962
title: Additional file 2 of Prmt5 deficiency inhibits CD4+ T-cell Klf2/S1pr1 expression and ameliorates EAE disease

description: Additional file 2. Materials information.
DOI: 10.6084/m9.figshare.23826968
title: Additional file 2 of PAX1 hypomethylation as a prognostic biomarker for radioresistance of cervical cancer

description: Additional file 2: Transcriptome sequencing and enrichment analysis data.
DOI: 10.6084/m9.figshare.14913755.v1
title: Additional file 3 of Identification of potential biomarkers for pathogenesis of Alzheimer’s disease

description: Additional file 3: Table S2. Significantly enriched GO entries and KEGG pathways.
DOI: 10.5281/zenodo.10658218
title: melanotaenia_australis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10658219
title: melanotaenia_australis_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.6084/m9.figshare.19120571
title: Additional file 12 of Dissection of canopy layer-specific genetic control of leaf angle in Sorghum bicolor by RNA sequencing

description: Additional file 12: Supplementary Table S6. Rice, maize, and Arabidopsis homologs for the 284 DE candidate genes co-localizing with leaf angle QTL. Note: A separate excel file with these Tables is provided.
DOI: 10.6084/m9.figshare.19120571.v1
title: Additional file 12 of Dissection of canopy layer-specific genetic control of leaf angle in Sorghum bicolor by RNA sequencing

description: Additional file 12: Supplementary Table S6. Rice, maize, and Arabidopsis homologs for the 284 DE candidate genes co-localizing with leaf angle QTL. Note: A separate excel file with these Tables is provided.
DOI: 10.6084/m9.figshare.25215587
title: White Lake Walleye SMR Data

description: The csv file "whitelake" contains the respirometry data collected in Bihun et al. 2024. Definitions for each column heading can be found in the Read.me file.The .R file contains the associated R script that was used to analyze the data.Effects of temperature, body size, and sex on the standard metabolic rates of a sexually dimorphic freshwater piscivore, walleye (Sander vitreus)Authors: Christian J. Bihun, Megan K. Murphy, Timothy B. Johnson, Aaron T. Fisk, Matthew M. Guzzo, Charles P. Madenjian, Graham D. Raby.<br><br><br>
DOI: 10.6084/m9.figshare.25215587.v2
title: White Lake Walleye SMR Data

description: The csv file "whitelake" contains the respirometry data collected in Bihun et al. 2024. Definitions for each column heading can be found in the Read.me file.The .R file contains the associated R script that was used to analyze the data.Effects of temperature, body size, and sex on the standard metabolic rates of a sexually dimorphic freshwater piscivore, walleye (Sander vitreus)Authors: Christian J. Bihun, Megan K. Murphy, Timothy B. Johnson, Aaron T. Fisk, Matthew M. Guzzo, Charles P. Madenjian, Graham D. Raby.<br><br><br>
DOI: 10.6084/m9.figshare.25215587.v1
title: White Lake Walleye SMR Data

description: The csv file "whitelake" contains the respirometry data collected in Bihun et al. 2024. The .R file contains the associated R script that was used to analyze the data. Effects of temperature, body size, and sex on the standard metabolic rates of a sexually dimorphic freshwater piscivore, walleye (Sander vitreus)Authors: Christian J. Bihun, Megan K. Murphy, Timothy B. Johnson, Aaron T. Fisk, Matthew M. Guzzo, Charles P. Madenjian, Graham D. Raby.<br><br><br>
DOI: 10.6084/m9.figshare.25221926.v1
title: PriorData

description: Necessary files for regulatory network construction
DOI: 10.6084/m9.figshare.25221926
title: PriorData

description: Necessary files for regulatory network construction
DOI: 10.6084/m9.figshare.25221926.v2
title: PriorData

description: Necessary files for regulatory network construction
DOI: 10.6084/m9.figshare.25221926.v3
title: PriorData

description: Necessary files for regulatory network construction
DOI: 10.5517/ccdc.csd.cc2dy8n9
title: CCDC 2232671: Experimental Crystal Structure Determination

description: Related Article: L. Izotova, G. Shakirzyanova, O. Xolbekov, S. Turageldiyev, B. Babaev, B. Ibragimov|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|85|doi:10.1107/S2056989022012154
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dy8pb
title: CCDC 2232672: Experimental Crystal Structure Determination

description: Related Article: L. Izotova, G. Shakirzyanova, O. Xolbekov, S. Turageldiyev, B. Babaev, B. Ibragimov|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|85|doi:10.1107/S2056989022012154
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22790590
title: Additional file 1 of Infection prevention and control measures for preterm infants discharged into the community: a scoping review protocol

description: Additional file 1.
DOI: 10.6084/m9.figshare.22790590.v1
title: Additional file 1 of Infection prevention and control measures for preterm infants discharged into the community: a scoping review protocol

description: Additional file 1.
DOI: 10.5517/ccdc.csd.cc2bt75l
title: CCDC 2169199: Experimental Crystal Structure Determination

description: Related Article: Yangbin Xie, Songshan Dai, Yue Wang, Xi Wang, Ying Sun, Zhenghua Ju, Ran Fang, Baoxin Zhang, Jincai Wu, Xiaoxiang Zhang, Xiaobo Pan|2023|CrystEngComm|25|2204|doi:10.1039/D2CE01590K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bt76m
title: CCDC 2169200: Experimental Crystal Structure Determination

description: Related Article: Yangbin Xie, Songshan Dai, Yue Wang, Xi Wang, Ying Sun, Zhenghua Ju, Ran Fang, Baoxin Zhang, Jincai Wu, Xiaoxiang Zhang, Xiaobo Pan|2023|CrystEngComm|25|2204|doi:10.1039/D2CE01590K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fyv6g
title: CCDC 2263006: Experimental Crystal Structure Determination

description: Related Article: Xin Lu, Jianlei Qian, Xiaomin Yuan, Yongyang Lu, Jiayin Sun, Hegen Zheng, Chuanlei Zhang|2023|Cryst.Growth Des.|23|6719|doi:10.1021/acs.cgd.3c00598
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ch8kq
title: CCDC 2189423: Experimental Crystal Structure Determination

description: Related Article: S.I. Tirkasheva, O.E. Ziyadullaev, A.G. Eshimbetov, B.T. Ibragimov, J.M. Ashurov|2023|Acta Crystallogr.,Sect.E:Cryst.Commun.|79|605|doi:10.1107/S2056989023004772
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g5vzh
title: CCDC 2269757: Experimental Crystal Structure Determination

description: Related Article: shufan pan|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6073/pasta/c622edd9114927f407cd55adb323fee7
title: Software Tools to Collect and Use Provenance in R

description: The software tools that scientists use to process and analyze data are typically optimized for performance and ease of use. Few if any such tools are designed to capture and record the details of what happens as the tool performs its task. This detailed information, and more generally the history of an item of data from its creation to its present state, is known as provenance. Provenance has the potential to make science more transparent, reliable, and reproducible.
 This project focused on collecting and using provenance for scripts written in the R statistical language, which is widely used by ecologists and environmental scientists for data analysis and visualization. Our tools include a provenance collector (rdtLite), which collects provenance as an R script executes (or during a console session), as well as other tools that use the collected provenance to document and visualize the execution or to support activites such as script debugging. The R packages included here are also available on CRAN. For more details, see the project website on GitHub (https://end-to-end-provenance.github.io).
DOI: 10.5281/zenodo.10658224
title: Four-Dimensional Flow MRI for the Evaluation of Aortic Endovascular Graft A Pilot Study

description: Righini P, Secchi F, Mazzaccaro D, Giese D, Galligani M, Avishay D, Capra D, Monti CB, Nano G. Four-Dimensional Flow MRI for the Evaluation of Aortic Endovascular Graft: A Pilot Study. Diagnostics. 2023; 13(12):2113. https://doi.org/10.3390/diagnostics13122113

 

We aimed to explore the feasibility of 4D flow magnetic resonance imaging (MRI) for patients undergoing thoracic aorta endovascular repair (TEVAR). We retrospectively evaluated ten patients (two female), with a mean (±standard deviation) age of 61 ± 20 years, undergoing MRI for a follow-up after TEVAR. All 4D flow examinations were performed using a 1.5-T system (MAGNETOM Aera, Siemens Healthcare, Erlangen, Germany). In addition to the standard examination protocol, a 4D flow-sensitive 3D spatial-encoding, time-resolved, phase-contrast prototype sequence was acquired. Among our cases, flow evaluation was feasible in all patients, although we observed some artifacts in 3 out of 10 patients. Three individuals displayed a reduced signal within the vessel lumen where the endograft was placed, while others presented with turbulent or increased flow. An aortic endograft did not necessarily hinder the visualization of blood flow through 4D flow sequences, although the graft could generate flow artifacts in some cases. A 4D Flow MRI may represent the ideal tool to follow up on both healthy subjects deemed to be at an increased risk based on their anatomical characteristics or patients submitted to TEVAR for whom a surveillance protocol with computed tomography angiography would be cumbersome and unjustified.
DOI: 10.5281/zenodo.10658225
title: Four-Dimensional Flow MRI for the Evaluation of Aortic Endovascular Graft A Pilot Study

description: Righini P, Secchi F, Mazzaccaro D, Giese D, Galligani M, Avishay D, Capra D, Monti CB, Nano G. Four-Dimensional Flow MRI for the Evaluation of Aortic Endovascular Graft: A Pilot Study. Diagnostics. 2023; 13(12):2113. https://doi.org/10.3390/diagnostics13122113

 

We aimed to explore the feasibility of 4D flow magnetic resonance imaging (MRI) for patients undergoing thoracic aorta endovascular repair (TEVAR). We retrospectively evaluated ten patients (two female), with a mean (±standard deviation) age of 61 ± 20 years, undergoing MRI for a follow-up after TEVAR. All 4D flow examinations were performed using a 1.5-T system (MAGNETOM Aera, Siemens Healthcare, Erlangen, Germany). In addition to the standard examination protocol, a 4D flow-sensitive 3D spatial-encoding, time-resolved, phase-contrast prototype sequence was acquired. Among our cases, flow evaluation was feasible in all patients, although we observed some artifacts in 3 out of 10 patients. Three individuals displayed a reduced signal within the vessel lumen where the endograft was placed, while others presented with turbulent or increased flow. An aortic endograft did not necessarily hinder the visualization of blood flow through 4D flow sequences, although the graft could generate flow artifacts in some cases. A 4D Flow MRI may represent the ideal tool to follow up on both healthy subjects deemed to be at an increased risk based on their anatomical characteristics or patients submitted to TEVAR for whom a surveillance protocol with computed tomography angiography would be cumbersome and unjustified.
DOI: 10.6073/pasta/97a2e1509062a0450b1ac8d86dadfc28
title: Snowbed experiment species composition and hobo data for Niwot Ridge, 2012 - ongoing.

description: Niwot Ridge climate records indicate a trend of warmer spring and
 summer temperatures and earlier timing of snowmelt. In alpine tundra
 plant communities where snow cover limits growing season length, the
 current climatic trend is conducive to a longer growing season. The
 snowbed experiment was established in order to monitor changes in
 plant cover and community composition in the alpine tundra in
 response to extended summer growing season conditions. Of particular
 interest are late-melting snowbed areas where plant colonization and
 survival are most restricted or entirely prevented by a limited
 number of snow-free days with the sunlight and temperature necessary
 for plant establishment and growth.
 
 
 In 2012, fifteen 1 x 1 m plots were established at 5 sites where
 there are persistent, late-melting snowbeds. Plots were placed along
 (1) an elevation gradient and (2) a snow-cover gradient from
 persistent snowbeds, where snowpack is greatest and melt-out dates
 latest in the season, to wind-scoured dry meadows, where snow pack
 is least and melt-out dates earliest. In 2015 the one site was
 dropped from the experiment because the snowbed there was quite
 different from the other four.
DOI: 10.6084/m9.figshare.19120489
title: Additional file 4 of Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses

description: Additional file 4 : Table S3. Primers used for construct expression vector of FtMAPK1. For expression of recombinant plasmid in Tartary buckwheat using pCHF-YFP vector.
DOI: 10.6084/m9.figshare.19120489.v1
title: Additional file 4 of Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses

description: Additional file 4 : Table S3. Primers used for construct expression vector of FtMAPK1. For expression of recombinant plasmid in Tartary buckwheat using pCHF-YFP vector.
DOI: 10.6084/m9.figshare.19120480.v1
title: Additional file 1 of Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses

description: Additional file 1 : Table S1. List of the 16 MAPK genes identified in this study
DOI: 10.6084/m9.figshare.19120495.v1
title: Additional file 5 of Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses

description: Additional file 5 : Table S4. primer sequences of RT-qPCR
DOI: 10.6084/m9.figshare.23827016.v1
title: Additional file 1 of Comparative transcriptome findings reveal the neuroinflammatory network and potential biomarkers to early detection of ischemic stroke

description: Additional file 1.
DOI: 10.6084/m9.figshare.19120480
title: Additional file 1 of Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses

description: Additional file 1 : Table S1. List of the 16 MAPK genes identified in this study
DOI: 10.6084/m9.figshare.19120486.v1
title: Additional file 3 of Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses

description: Additional file 3 : Table S2. Cis-acting elements of FtMAPKs promoter
DOI: 10.3886/icpsr06562.v2
title: Public Health on the Agenda of Counties, 1993: [United States]
title: Version 2

description: This survey queried heads of county councils and
commissions, elected county executives, county administrators, and
county health officers to explore policy development and the
interaction between counties and public health agencies. Major areas
investigated were the amount of county activity initiated by community
groups seeking county action regarding public health and other county
functions, most important county problems and policy priorities,
effectiveness of the county health department, functions performed by
the public health agency in the county, reorganization of the health
department, level of advocacy by the county board of health for public
health issues, type of statutory authority of the board of health,
administration of state health programs by the county health agency,
activities of the head of the county health department including
interactions with the community and media, the success of county
departments in obtaining increased funding, level of county governing
board member support for increased funding, change in total county
budget during year, change in local contribution to the public health
budget, and county officials' training in medicine or health care.
Demographic information includes education, education major, degrees
held, years in position, gender, year of birth, and ethnicity.
description: Stratified random sample, giving more weight to counties 
 with large populations. Only counties with public health departments 
 were eligible for inclusion. Excluded were counties in Maine, New 
 Hampshire, Vermont, Massachusetts (except Barnstable), Rhode Island, 
 Connecticut, Delaware, South Dakota, Alaska (except North Slope), and 
Hawaii.
description: Datasets: 
DS0: Study-Level Files
DS1: Raw Data File
DS2: SPSS Export File
description: All United States counties or county-equivalent
jurisdictions to which an identified public health department reports.
DOI: 10.5066/p9zvo70a
title: Attribution of fish sampling data to NHDPlus HR catchments within the Chesapeake Bay Watershed

description: This data release links fish survey data from a suite of programs in the Chesapeake Bay watershed to the NHDPlus High Resolution Region 02 networks, hereafter referred to as NHDPlusHR. The data set contains site name, survey program, coordinates of sample, ancillary information such as sample date and site location information where available, and HR Permanent Identifier. It also includes a confidence classification category for each of NHD assignment based on a set of pre-determined rules. In total there were 15 confidence categories ranging from high confidence to low confidence. We caution the use of sampling points which were given anything other than "high" confidence in their assignment to a given NHD catchment/flowline to avoid spurious/inappropriate attribution of geospatial data to fish data samples represented herein and refer the potential user to the Confidence Dictionary.csv which describes the criteria for each confidence category.
DOI: 10.6084/m9.figshare.22790599.v1
title: Additional file 2 of Integrated analysis of circulating and tissue proteomes reveals that fibronectin 1 is a potential biomarker in papillary thyroid cancer

description: Additional file 2: Supplementary Table S2-1. All proteins identified in serum samples of papillary thyroid cancer patients (before and after treatment) and healthy controls (HCs) by antibody microarrays. Supplementary Table S2-2. All proteins identified in serum samples of papillary thyroid cancer patients (before and after treatment) and healthy controls (HCs) by DIA-MS.