cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24669249.v1
title: Quality filtered data

description: The Neotropics harbors the largest species richness of the planet; however, even in well-studied groups, there are potentially hundreds of species that lack a formal description, and likewise, many already described taxa have challenging identifications. Specifically in small mammals, complex morphological diagnoses have been facilitated by the use of molecular data, particularly from mitochondrial sequences, to obtain accurate species identifications. Obtaining mitochondrial markers implies the use of PCR and specific primers, which are largely absent for non-model organisms. Oxford Nanopore Technologies (ONT) is a new alternative for sequencing the entire mitochondrial genome without the need for specific primers. Nevertheless, only a limited number of studies have employed exclusively ONT long-reads to assemble mitochondrial genomes, and no study has yet evaluated the usefulness of such reads in multiple non-model organisms. Hence, in this study, we explore the use of ONT long reads as a tool for the reconstruction of mitochondrial genomes of small mammals and a potential method for real-time species identification.We implemented fieldwork to collect small mammals, including rodents, bats, and marsupials, in five localities in the northern extreme of the Cordillera Central of Colombia. For DNA extraction six millimeters were removed from the distal section of the tail of terrestrial mammals (rodents, opossums), and three patagium (wing membrane) samples were taken from bats. DNA samples were sequenced using the MinION device and Flongle flow cells. Shotgun-sequenced data was used to reconstruct the mitochondrial genome of all the samples. In parallel, using a customized computational pipeline, species-level identifications were obtained based on sequencing raw reads (Whole Genome Sequencing or mitochondrial-filtered reads). ONT-based identifications were corroborated using traditional morphological characters and phylogenetic analysis. This dataset corresponds to the raw fastq sequence files with reads above Q7. Each file corresponds to one of the 21 individuals for which we obtained sequencing data.
DOI: 10.6084/m9.figshare.26022043.v1
title: Supplementary Material for: Classification of Mild Cognitive Impairment and Alzheimer's Disease Using Manual Motor Measures

description: INTRODUCTION: Manual motor problems have been reported in mild cognitive impairment (MCI) and Alzheimer's disease (AD), but the specific aspects that are affected, their neuropathology, and potential value for classification modeling is unknown. The current study examined if multiple measures of motor strength, dexterity, and speed are affected in MCI and AD, related to AD biomarkers, and are able to classify MCI or AD.
 METHODS: Fifty-three cognitively normal (CN), 33 amnestic MCI, and 28 AD subjects completed five manual motor measures: grip force, Trail Making Test A, spiral tracing, finger tapping, and a simulated feeding task. Analyses included: 1) group differences in manual performance; 2) associations between manual function and AD biomarkers (PET amyloid β, hippocampal volume, and APOE ε4 alleles); and 3) group classification accuracy of manual motor function using machine learning.
 RESULTS: amnestic MCI and AD subjects exhibited slower psychomotor speed and AD subjects had weaker dominant hand grip strength than CN subjects. Performance on these measures was related to amyloid β deposition (both) and hippocampal volume (psychomotor speed only). Support vector classification well-discriminated control and AD subjects (area under the curve of 0.73 and 0.77 respectively), but poorly discriminated MCI from controls or AD.
 CONCLUSION: Grip strength and spiral tracing appear preserved, while psychomotor speed is affected in amnestic MCI and AD. The association of motor performance with amyloid β deposition and atrophy could indicate that this is due to amyloid deposition in- and atrophy of motor brain regions, which generally occurs later in the disease process. The promising discriminatory abilities of manual motor measures for AD emphasize their value alongside other cognitive and motor assessment outcomes in classification and prediction models, as well as potential enrichment of outcome variables in AD clinical trials.
DOI: 10.6084/m9.figshare.28429283.v2
title: LCTopo

description: A dataset (LCTopo) that integrate the topographic characteristics of lakes are proposed here.
DOI: 10.6084/m9.figshare.9356693.v1
title: Scale.csv

description: Participants' rating for anxiety and avoidance scales for claustrophobia.
DOI: 10.17632/dvdrsxnh79
title: Inflammatory cytokines and Glomerulonephritis

description: A two-sample Mendelian randomization (MR) analysis was conducted using genetic variants associated with all-cause glomerulonephritis from the FinnGen R10 dataset (3,243 cases and 408,938 controls) and inflammatory cytokine data derived from a GWAS summary of 14,824 healthy participants. The primary method for assessing causal relationships between exposures and outcomes was the inverse variance weighted (IVW) approach. To increase the robustness of the results, multiple sensitivity analyses including weighted median, simple mode, weighted mode, and MR-Egger were performed. This analysis suggests that elevated levels of several inflammatory cytokines, including Interleukin-7, Oncostatin M, C-X-C motif chemokines 1 and 11, and Natural killer cell receptor 2B4, may increase the risk of Glomerulonephritis, whereas higher levels of Interleukin-18 receptor 1 may decrease the risk.
DOI: 10.17632/zw44bpc7d8
title: Pectobacterium_carotovorum_21TX0081_16S_rRNA

description: Pectobacterium carotovorum was isolated from a diseased onion plant in Texas. The PCR product of 16S ribosomal RNA (rRNA) from P. carotovorum was Sanger sequenced. The raw forward and reverse orientation reads of 16S rRNA is reported here.
DOI: 10.6084/m9.figshare.12887213.v3
title: County-level CO2 emissions in China

description: A dataset of county-level CO2 emissions in China, downscalled from provincial emissions from fossil fuel consumption.
DOI: 10.6084/m9.figshare.22324993.v1
title: Metal additive manufacturing porosity images

description: We provide an image dataset of optical microscopy images cropped to 600x900 slices. The images originate from 81 additively manufactured cubes of a high manganese steel.Code for processing and training ML models can be found from this repository: https://github.com/mrc989crm/PorosityDetectionInMetalAdditiveManufacturing
DOI: 10.6084/m9.figshare.27177657.v2
title: Impedance Data for Electron Only Device Sample 1

description: Data for the investigation of multi-functional emissive materials (electron transporter cum emitter) for OLED applications. The materials have been developed by appending triphenyl-phosphine-oxide (Ph3P=O) (an electron transport enhancer) to the carbazole. We find that our TADF host 𝑆<sub>1</sub> has better electron transporting capability than some standard electron transport materials (TAZ) while competitively similar with some others (AlQ3) being only slightly inferior to some (TPBi) and 2 order of magnitude smaller than some (BPhen). The device performance is improved due to the presence of thermally activated delayed fluorescence (TADF).We report the fabrication of electron only device (EOD) based on the electron transport cum TADF emissive material 𝑆<sub>1</sub>. Employing impedance spectroscopy we determine the electron mobility, within reasonable limits.
DOI: 10.17632/scjcjyvjhn
title: Supplemental dataset for Josset et al. 2024 GRL submission

description: Supplemental dataset for Josset et al. 2024 GRL submission
DOI: 10.6084/m9.figshare.21692186.v3
title: <b>Effect of trade on global aquatic food consumption</b><b> </b><b>patterns</b>

description: These datasets are all supplementary data for paper titled "<b>Effect of trade on global aquatic food consumption</b><b> </b><b>patterns</b>"
DOI: 10.6084/m9.figshare.3437417.v2
title: Nest Bacterial Environment Affects Microbiome of Hoopoe Eggshells, but not that of the Uropygial Secretion

description: <br>OTU table
DOI: 10.4121/14440757.v2
title: CAmpi Flegrei LAndslide Geodatabase (CAFLAG)

description: The CAmpi Flegrei LAndslide Geodatabase (CAFLAG) consists of 2302 landslide events occurred along the volcanic slopes of the Campi Flegrei caldera (Italy), mostly in the past century. Data are provided in ESRI shapefile format, as vector points georeferenced in the UTM33N-WGS84 coordinate system (EPSG 32633). <br>
DOI: 10.17632/sxx3ff5h7x
title: Big Data for Better Tourism Policy

description: Big Data for Better Tourism Policy, Management, and Sustainable Recovery from COVID-19
DOI: 10.6084/m9.figshare.5507983.v1
title: Dataset of generated and evaluated Kuwaiti Public Authority for Housing Welfare building design program with lightweight steel framed construction elements

description: The geometric data was generated using the EPSAP algorithm; the construction elements physical properties were saved from the EPSAP algorithm database; and, the performance data was obtained using the FPOP algorithm coupled to the simulation engine EnergyPlus v8.7.0. The weather file used in the simulations was the KISR Kuwait International Airport - KWT data available at the Department of Energy (URL https://goo.gl/KauYMw).
DOI: 10.17632/hy8xnj7kk7
title: Climate Data Collection, Processing for Intelligent Optimization of Reference Evapotranspiration for Precision Agriculture Applications 

description: Dataset is collected from Pakistan to determine the Reference Evapotranspiration using Penman Montieth Method.
DOI: 10.15468/dl.vp45y5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9449 -26.0614,44.9648 -26.0621,44.9648 -25.1504,43.6164 -25.1504,43.93 -25.627,44.5871 -25.7989,44.9449 -26.0614))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013420-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.23819364.v1
title: Data for the manuscript "Fish gill surface area can keep pace with metabolic oxygen requirements across body mass and temperature".

description: This is the dataset for the article "Fish gill surface area can keep pace with metabolic oxygen requirements across body mass and temperature" in <i>Functional Ecology. </i>
DOI: 10.17632/k77wvj646d
title: Wet chemistry, mid-infrared spectroscopy, and near-infrared spectroscopy data, Ecklonia radiata, New Zealand, 2019-2021

description: Wet chemistry, mid-infrared spectroscopy, and near-infrared spectroscopy data collected for the kelp Ecklonia radiata in Northern New Zealand from 2019 to 2021 as described in Nepper-Davidsen et al. (submitted). All measurements were done on milled freeze dried material, and wet chemistry measurements include content of nitrogen, carbon, sulfur, ash, phenols, glucose, alginate, guluronic acid, mannuronic acid, fucose, mannose, galactose, and xylose. Data include 162 calibration samples which were sampled from 12 different sites and 12 different months and 24 validation samples.
DOI: 10.6084/m9.figshare.28638386.v1
title: <b>Supporting data for 'A central Tibetan highland during the Late Jurassic' By J ZHANG, Z HAN et al.</b>

description: Supporting infor for '<b>A central Tibetan highland during the Late Jurassic: Insights from sedimentology, provenance and detrital zircon trace element of the Xueshan Formation in the Qiangtang Basin</b><b>'</b>Table S1 Sandstone petrography of the Xueshan Formation including published data.Table S2 Heavy mineral composition of the sandstones from the Xueshan Formation.Table S3 Detrital zircon U-Pb ages (sheet 1) and trace element data (sheet 2) from the Xueshan Formation.Table S4 Published whole-rock geochemistry data of the Jurassic magmatic rocks in the south-central QT. Sheet 1 of this table is the supporting data for Figure 11 in the main text. Sheet 2 provides the references for these data.Table S5 DZmix modeling results of the sandstones from the Xueshan Formation using the method of Sundell and Saylor (2017). Each sheet, named after sample name, represents DZmix modeling results of one single sample. In each modeling, K-S D value, Kuiper V value and cross-correlation coefficient results are provided.
DOI: 10.6084/m9.figshare.14390717.v1
title: ROR Data Dump 8.0 (April 2021)

description: ROR data download. Based on GRID release 39: https://doi.org/10.6084/m9.figshare.14316596.<br>This is a previous version of https://doi.org/10.5281/zenodo.5534443.
DOI: 10.6084/m9.figshare.26242142.v1
title: Genetic heterogeneity induces non-additive behavioral changes in <i>Drosophila</i>

description: Dataset of behavioral phenotypes in homogenous and heterogeneous groups in <i>Drosophila</i>.
DOI: 10.6084/m9.figshare.29002169.v1
title: Podman image scperturbench_cpa

description: Podman image scperturbench_cpa that only contains the cpa environment.
DOI: 10.17632/n83765wy3b
title: Data for: Psychosis SSRN
DOI: 10.6084/m9.figshare.28009319.v2
title: <b>Influencia de cuidadores en la calidad de vida de personas con demencia</b>

description: <b>Introducción:</b> las personas que padecen demencia habitualmente son atendidas en casa por un familiar, quien realiza la labor de manera informal y que pueden versen perjudicados en su calidad de vida y, por lo tanto, en el desempeño de la actividad de cuidar e impactar en la calidad de vida de las personas con demencia.<b>Objetivo:</b> Examinar la influencia de las características y competencia de los cuidadores sobre la calidad de vida informada por las personas con demencia leve o moderada.<b>Materiales y </b><b>Métodos</b><b>: </b>Estudio de enfoque cuantitativo de diseño transversal de alcance correlacional, los participantes fueron 50 diadas conformadas por personas con demencia leve y moderada y sus cuidadores. Las variables evaluadas fueron calidad de vida de la persona con demencia, competencia, sobrecarga, calidad de vida del cuidador, atención, flexibilidad mental, control inhibitorio, toma de decisiones y memoria de Trabajo.<b>Resultados:</b> Este estudió evidenció correlaciones significativas entre la competencia (bienestar, unicidad, interacción social, conocimiento y procedimental/instrumental), calidad de vida y sobrecarga/estrés del cuidador con la calidad de vida de las personas con demencia. El funcionamiento ejecutivo (control inhibitorio y flexibilidad cognitiva) se asoció significativamente con la competencia de los cuidadores.<b>Discusión: </b>La calidad de vida del cuidador está relacionada positivamente con la calidad de vida de la Persona con demencia, por lo que fortalecer las características del cuidador contribuye al adecuado manejo de la enfermedad y en el bienestar de la persona con demencia.<b>Conclusiones:</b> Los resultados demuestran el impacto de la competencia, sobrecarga y habilidades ejecutivas de los cuidadores informales sobre la calidad de vida de las personas con demencia.
DOI: 10.17632/496h7bv7cx
title: Bumblebee Thermal Tolerance

description: Maximal critical thermal tolerance (CTmax) of castes and larvae of a bumblebee (Bombus impatiens) and the effect of environmental temperature on the colony metabolic rate and nest temperature. Larval CTmax is significantly lower than the CTmax of adult castes. Whole-colony thermoregulation is energetically costly at high and low temperatures. Colonies experiencing 30°C and below successfully thermoregulate nest temperature. Above 30°C, nest temperature cannot be regulated via colonial thermoregulation.
DOI: 10.17632/8yp2dmc5kk
title: Data for: Optimal Taylor Rules when Targets are Uncertain

description: The data file includes times series data for the U.S. output gap (initial estimates and revised estimates), Core CPI inflation, the filtered output gap (initial and revised) and the filtered Core CPI Inflation. The data go from 1987 Q3 to 2007 Q4. The file also includes the figures used in the text of Boehm and House "Optimal Taylor Rules when Targets are Uncertain"
DOI: 10.6084/m9.figshare.19448408.v1
title: download data

description: Raw data downloaded from open data sources.
DOI: 10.6084/m9.figshare.14454354.v1
title: mCHH island bed files

description: From the paper "CHH Methylation Islands: A non-conserved feature of grass genomes that is positively associated with transposable elements but negatively associated with gene-body methylation." (Martin et al., 2021) Methods are described therein. For each of the eight species included, files include 100 bp windows with enriched mCHH levels near (within 2 kb) of annotated genes. These include only the highest mCHH window associated with each gene. Files with full regions of mCHH enrichment are available upon request (galentm@uci.edu).<br>
DOI: 10.6084/m9.figshare.24013836.v1
title: Reconfigurable self-assembly of photocatalytic magnetic microrobots for water purification

description: Dataset of the article.
DOI: 10.6084/m9.figshare.11634315.v1
title: EucFACE carbon budget data repository

description: This is the data repository for the EucFACE carbon budget synthesis paper. <br><br>
DOI: 10.6084/m9.figshare.28636409.v1
title: PRISMA checklist for "Palm kernel cake impact on ruminant physiology, feeding behavior, and muscle physicochemical traits: A meta-analysis."

description: PRISMA checklist for "Palm kernel cake impact on ruminant physiology, feeding behavior, and muscle physicochemical traits: A meta-analysis."
DOI: 10.6084/m9.figshare.27011326.v1
title: CPI Hired Guns Scores Lithuania 2001, 2003, 2017 and 2021 and Ireland 2015 and 2023

description: These are the CPI scores for the lobbying regulation legislation in place in Lithuania and Ireland. Each of the Acts passed in Lithuaniaand Ireland, regulating lobbying, original and amended, are examined and scored here against the CPI's Hired Guns Index.
DOI: 10.6084/m9.figshare.27262104.v1
title: Preliminary disclosure of code and data.

description: This project provides the (preliminary) source code to fit the empirical retweeting probability of information spreading on online social networks.
DOI: 10.6084/m9.figshare.24893799.v1
title: Dataset for Data Leakage Detection in Machine Learning Code

description: This is the dataset created and used in the paper: "Data Leakage Detection in Machine Learning Code: Transfer Learning, Active Learning, or Low-shot Prompting?"
DOI: 10.6084/m9.figshare.13204085.v1
title: ASV Table

description: This is the ASV table and taxonomic assignments (and sequences) used for the 16S rRNA gene based analyses.
DOI: 10.6084/m9.figshare.2444446.v1
title: Codes and Datasets for “Potential and Actual impacts of deforestation and afforestation on land surface temperature”

description: The dataset includes MODIS Land Surface Temperate (LST), CRU air temperature, MODIS Land Cover (LC), and Global Forest Change GFC data. The codes are written in Matlab and Python. Users can use the codes and datasets to reproduce all results in the paper or explore new topics with their own interest. Please read the user guide document for more details. The codes and data can be used freely under the MIT License (see License.txt). Users should cite the original paper of Li et al (2016) and cite or acknowledge this dataset (DOI: 10.6084/m9.figshare.2444446) when using it.
DOI: 10.6084/m9.figshare.28156742.v1
title: Additional Files from Franco et al., Genomic and metagenomic survey of microbial carbonic anhydrase genes reveals novel clades, high diversity, and biome-specificity

description: Additional Files from Franco et al., Genomic and metagenomic survey of microbial carbonic anhydrase genes reveals novel clades, high diversity, and biome-specificity. <b>doi:</b> https://doi.org/10.1101/2025.01.09.631809<b>Additional file 1.</b> Tab-separated file providing the identification, source, and taxonomy for the genes included in this study.<b>Additional file 2.</b> Cluster FASTA-like format produced by MMseqs2 after clustering the sequences at 50% sequence similarity. Two successive identical names indicate a new cluster; the first sequence is the cluster representative sequence, which also gives the group its name.<b>Additional file 3.</b> Tab-separated values (TSV) file showing the lowest taxonomic level shared by all the members in the cluster. The taxonomic ranks analyzed were superkingdom, kingdom, phylum, clade, class, order, family, genus, species, and strain.<b>Additional File 4.</b> Edited multiple sequence alignments and corresponding phylogenetic trees for α-, β-, and γ-carbonic anhydrases (CAs).<b>Additional file 5.</b> Count of CA HMM hits to the metaG/metaT database at IMG. GOLD Ecosystem classification is provided.
DOI: 10.17632/8kzkdctdtp
title: Data for: Effects of Cr/Ni ratio on physical properties of Cr-Mn-Fe-Co-Ni high-entropy alloys

description: In this compilation of data, we show how the Cr/Ni ratio affects the physical properties of ten single-phase FCC CrxMn20Fe20Co20Ni40-x high-entropy alloys for 0 ≤ x ≤ 26 at.%. All the data are origin files (.opj). Here is a short description of the origin files, which are numbered according to their order of appearence in the corresponding research article and supplementary materials:
Fig02: X-Ray diffraction patterns of the alloys
Fig03: Curves obtained by differential scannning calorimetry
Fig04: Temperature dependence of the coefficients of thermal expansion
Fig05: Temperature dependence of the elastic parameters
Fig06: Thermal gravimetric analysis of the Mn20Fe20Co20Ni40 (in at.%) alloy
Fig07+09b: Results of ab-initio calculations of enthalpy differences relative to the nonmagnetic phase at 0 K, magnetic critical temperature, and spontaneous volume magnetostriction
Fig09+10+S8: Plots showing the separation distance between Shockley partials as a function of the angle between the dislocation line and the perfect Burgers vector for 14 ≤ x ≤ 26 at.%. These data allow to determine the stacking fault energy of the alloys.
Fig11: Comparison of these latter plots with those reported in the literature for Cu and Ag. 
FigS3: EDX concentration profiles of the as-cast ingots for 0 ≤ x ≤ 10 at.%
FigS4,S5: EDX concentration profiles of the as-cast ingots for 14 ≤ x ≤ 26 at.%
lattice parameters: lattice parameters of the investigated alloys
DOI: 10.6084/m9.figshare.28852319.v3
title: Global Graph Dataset

description: The Global Urban Graph dataset provides pre-computed urban graphs that can be converted into NetworkX, igraph, PyG, and DGL graph formats.Each .zip folder contains the node and edge information required to construct a full-scale city graph. This consists of graph nodes and their features (plots, buildings, streets, and intersections) and connections between nodes. To support robustness to diverse urban applications, we do not instantiate graph edges directly. Instead, users can specify how they wish to construct graph edges (e.g. by k-nearest neighbour or Euclidean distance). These functionalities have been implemented with the Urbanity python package which provides functionalities for saving, loading, visualising, processing, and converting urban graphs to machine learning friendly formats (PyG and DGL). Installation instructions are available at: https://github.com/winstonyym/urbanityThe graphs are referenced to global coordinate reference system (EPSG:4326). If you have any questions, please email: winstonyym@u.nus.edu / winyap@mit.edu