cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/wjt-4t9-te9
title: Cymatium Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/624-75s-03k
title: Erronea caurica (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1th-5eg-yrp
title: Metaxia metaxa (Delle Chiaje, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/93v-090-p2g
title: Caecum clarkii P. P. Carpenter, 1859

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4lb-3mz-kqb
title: Trivia candidula (Gaskoin, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q75-fjw-2fn
title: Murex trapa Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6d4-d70-4ap
title: Epitonium interstriatum (G. B. Sowerby III, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdt-y6c-7v4
title: Bittium latreillii (Payraudeau, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/705-7d7-je0
title: Thaisella coronata (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pvp-gxl-e4g
title: Bittium reticulatum (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sez-r7r-gql
title: Columbellidae Swainson, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9e6-85z-8rt
title: Ranellidae Gray, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/axm-b7c-w2v
title: Calyptraeidae Lamarck, 1809

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rwh-egp-g9g
title: Eatonina fulgida (J. Adams, 1797)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nzm-8mx-zd1
title: Hipponix incurvus (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1tl-bwp-6nj
title: Teinostoma lucidum A. Adams, 1863

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kd5-66q-vvg
title: Monetaria moneta (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/73r-clc-fsn
title: Monetaria caputserpentis (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gnm-8cn-zw5
title: Eatonina fulgida (J. Adams, 1797)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bpb-lxx-ecx
title: Barleeia subtenuis P. P. Carpenter, 1864

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wt7-gvr-4g4
title: Thiara Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c09-zc1-n8f
title: Supplanaxis nucleus (Bruguière, 1789)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4bk-15j-ysd
title: Calyptraea centralis (Conrad, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vkk-e9m-bg1
title: Bittium reticulatum (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/38t-g7v-102
title: Naria turdus (Lamarck, 1810)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5vj-9xb-mk2
title: Xenophora corrugata (Reeve, 1842)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dbt-d1a-p4t
title: Lyncina lynx (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k41-8hm-5s2
title: Marginella cleryi Petit de la Saussaye, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y1q-fwk-1d2
title: Crucibulum Schumacher, 1817

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lra-lct-a82
title: Metaxia metaxa (Delle Chiaje, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zfe-pg0-1pp
title: Euprotomus aurisdianae (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vgh-1af-rqt
title: Cerithiella insignis (Jeffreys, 1885)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w4k-gd4-9tj
title: Triphora Blainville, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ab-p3d-a80
title: Triphora Blainville, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kmq-s1t-qpb
title: Cymatium Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5ns-7kt-zb3
title: Bittium latreillii (Payraudeau, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/elp-3qn-dlj
title: Eulimidae R. A. Philippi, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q87-xph-w3h
title: Clypeomorus bifasciata (G. B. Sowerby II, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/68d-dtx-c1d
title: Cerithium columna G. B. Sowerby I, 1834

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ts-tb3-9wx
title: Casmaria erinaceus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5k-8yf-7kq
title: Tornus subcarinatus (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ssm-xc4-0gz
title: Lyncina vitellus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bfq-dsw-fx8
title: Rissoidae Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/esy-wpn-c6l
title: Monetaria moneta (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x14-ve6-7r8
title: Rissoidae Gray, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wa6-wmx-n8w
title: Crepidula Lamarck, 1799

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5z6-dmz-4j5
title: Crepidula porcellana Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c4b-n0n-kwp
title: Capulus Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eqd-dq8-ysc
title: Tornus subcarinatus (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r2w-eyk-yry
title: Cypraeidae Rafinesque, 1815

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7vr-yad-rtc
title: Epitonium novangliae (Couthouy, 1838)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.18131034
title: Finer-Resolution Long-Term Plant Functional Types-specific Leaf Area Index at 500-m Resolution for Earth System Modeling – Year 2015

description: This dataset provides a global monthly plant functional type–specific leaf area index (PFT LAI) product at 500 m spatial resolution for the period 1985–2020. The dataset was developed by combining the PFT dataset with reprocessed MODIS Collection 6.1 LAI and GIMMS LAI4g products, using a remote-sensing-derived phenology scheme rather than conventional empirical approaches. By directly constraining phenological dynamics with satellite observations, the PFT LAI dataset captures realistic seasonal variations across different vegetation types. It enables detailed analysis of vegetation dynamics and land surface processes and supports fine-scale simulations and long-term assessments of land use and land cover change impacts.

The dataset is provided in NetCDF format using a 5° × 5° spatial tiling scheme, with files corresponding to each 30° × 30° region packaged into a single tar archive, named as RG_{latN}_{lonW}_{latS}_{lonE}.LSAI500m.{YEAR}.tar. Due to the large volume of the full long-term dataset, this deposition provides data for the year 2015 only. Data for 2005 is available at https://doi.org/10.5281/zenodo.18113489, and data for other years can be provided upon request. The corresponding PFT dataset is available at https://doi.org/10.5281/zenodo.18139027.
DOI: 10.5281/zenodo.18131035
title: Finer-Resolution Long-Term Plant Functional Types-specific Leaf Area Index at 500-m Resolution for Earth System Modeling – Year 2015

description: This dataset provides a global monthly plant functional type–specific leaf area index (PFT LAI) product at 500 m spatial resolution for the period 1985–2020. The dataset was developed by combining the PFT dataset with reprocessed MODIS Collection 6.1 LAI and GIMMS LAI4g products, using a remote-sensing-derived phenology scheme rather than conventional empirical approaches. By directly constraining phenological dynamics with satellite observations, the PFT LAI dataset captures realistic seasonal variations across different vegetation types. It enables detailed analysis of vegetation dynamics and land surface processes and supports fine-scale simulations and long-term assessments of land use and land cover change impacts.

The dataset is provided in NetCDF format using a 5° × 5° spatial tiling scheme, with files corresponding to each 30° × 30° region packaged into a single tar archive, named as RG_{latN}_{lonW}_{latS}_{lonE}.LSAI500m.{YEAR}.tar. Due to the large volume of the full long-term dataset, this deposition provides data for the year 2015 only. Data for 2005 is available at https://doi.org/10.5281/zenodo.18113489, and data for other years can be provided upon request. The corresponding PFT dataset is available at https://doi.org/10.5281/zenodo.18139027.
DOI: 10.15468/dl.kqvsa2
title: Occurrence Download

description: A dataset containing 236 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence, Specimen, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Geodetic datum assumed WGS84, Coordinate rounded, Coordinate reprojected)",
 "OccurrenceStatus is Present",
 "TaxonKey is Eugenia xalapensis"
 ]
}

 The dataset includes 236 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019091-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkvr38
title: Occurrence Download

description: A dataset containing 308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemichaena fruticosa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 308 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019092-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fey4bm
title: Occurrence Download

description: A dataset containing 3858 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna hirsuta",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 3858 records from 275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019093-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18593785
title: PySteMoDA Datasets

description: The source code for the software package PySteMoDA is already available at : https://zenodo.org/records/18258018 

This dataset includes the output files of NAMD simulations of mmCdh23EC19-20 and ICAM1 .

Cadherin-23 (CDH23) subdomain including extracellular cadherin (EC) repeats EC19-20 with three bound calcium ions (extracted from PDB: 5TFK and hereafter referred to as CDH23 EC19-20). Simulations of the CDH23 EC19-20 system ( = 244,076 atoms) were performed using NAMD 2.12 with the CHARMM36 force field and the TIP3P water model. Van der Waals forces were computed using a 12 Å cutoff with a switching function starting at 10 Å. Electrostatic forces were computed using the particle mesh Ewald algorithm with a grid spacing of 1 Å. Dynamics in time was advanced using a 2 fs timestep. The system was first minimized for 1,000 steps, then subjected to 50,000 steps of constrained backbone dynamics (k ~ 700 pN/nm). A Langevin thermostat and hybrid Nosé-Hoover piston method were used to maintain a temperature of 300 K and pressure of 1 atmosphere (NpT ensemble). In the first 1 ns a Langevin damping coefficient of 1 ps-1 was used for the thermostat while in the following 10 ns a Langevin damping coefficient of 0.1 ps-1 was used. A piston period of 200 fs and a damping timescale of 100 fs were used for pressure control. For SMD simulations, virtual springs were attached to the N- and C-terminal Cα atoms with spring constants of k ~ 700 pN/nm. The free ends of the virtual springs were moved at stretching speeds of 5 nm/ns in opposite directions. SMD data output and coordinates were written to disk every 40 fs and every 1 ps, respectively.

The second set of simulations used to validate and showcase PySteMoDA involved the intercellular adhesion molecule 1 (ICAM-1, = 67,215) which was simulated with NAMD 2.9  using the CHARMM36 force field  and the TIP3P water model. Dynamics in time were advanced using a 2 fs timestep. The results are reported in the supplementary material. We modelled ICAM-1 based on the cryo-EM structure of D1-D5 (PDB ID: 1Z7Z)   and crystal structure of D3-D5 (PDB ID: 2OZ4)  . Disulfide bonds were specified using the corresponding patch to create the protein structure file (PSF) for simulation. ICAM-1 was stretched at 1 nm/ns along a direction defined by the vector that connected the fixed and SMD atoms after equilibration. The N-terminal Cɑ atom was fixed during the simulation. The spring constant corresponds to 104 pN/nm. The simulation was carried out over a total of 70 ns with outputs written every 10 ps for both DCD (trajectory coordinates) and SMD frequencies. In the case of the ICAM-1, the simulation was conducted in the NVE ensemble, where the number of particles, volume, and total energy were conserved throughout the run.

Extended data is available along with the underlaying data within the file below : 










EXTENDED_DATA_Supp_material_PySteMoDA_v2.docx
DOI: 10.5281/zenodo.18593784
title: PySteMoDA Datasets

description: The source code for the software package PySteMoDA is already available at : https://zenodo.org/records/18258018 

This dataset includes the output files of NAMD simulations of mmCdh23EC19-20 and ICAM1 .

Cadherin-23 (CDH23) subdomain including extracellular cadherin (EC) repeats EC19-20 with three bound calcium ions (extracted from PDB: 5TFK and hereafter referred to as CDH23 EC19-20). Simulations of the CDH23 EC19-20 system ( = 244,076 atoms) were performed using NAMD 2.12 with the CHARMM36 force field and the TIP3P water model. Van der Waals forces were computed using a 12 Å cutoff with a switching function starting at 10 Å. Electrostatic forces were computed using the particle mesh Ewald algorithm with a grid spacing of 1 Å. Dynamics in time was advanced using a 2 fs timestep. The system was first minimized for 1,000 steps, then subjected to 50,000 steps of constrained backbone dynamics (k ~ 700 pN/nm). A Langevin thermostat and hybrid Nosé-Hoover piston method were used to maintain a temperature of 300 K and pressure of 1 atmosphere (NpT ensemble). In the first 1 ns a Langevin damping coefficient of 1 ps-1 was used for the thermostat while in the following 10 ns a Langevin damping coefficient of 0.1 ps-1 was used. A piston period of 200 fs and a damping timescale of 100 fs were used for pressure control. For SMD simulations, virtual springs were attached to the N- and C-terminal Cα atoms with spring constants of k ~ 700 pN/nm. The free ends of the virtual springs were moved at stretching speeds of 5 nm/ns in opposite directions. SMD data output and coordinates were written to disk every 40 fs and every 1 ps, respectively.

The second set of simulations used to validate and showcase PySteMoDA involved the intercellular adhesion molecule 1 (ICAM-1, = 67,215) which was simulated with NAMD 2.9  using the CHARMM36 force field  and the TIP3P water model. Dynamics in time were advanced using a 2 fs timestep. The results are reported in the supplementary material. We modelled ICAM-1 based on the cryo-EM structure of D1-D5 (PDB ID: 1Z7Z)   and crystal structure of D3-D5 (PDB ID: 2OZ4)  . Disulfide bonds were specified using the corresponding patch to create the protein structure file (PSF) for simulation. ICAM-1 was stretched at 1 nm/ns along a direction defined by the vector that connected the fixed and SMD atoms after equilibration. The N-terminal Cɑ atom was fixed during the simulation. The spring constant corresponds to 104 pN/nm. The simulation was carried out over a total of 70 ns with outputs written every 10 ps for both DCD (trajectory coordinates) and SMD frequencies. In the case of the ICAM-1, the simulation was conducted in the NVE ensemble, where the number of particles, volume, and total energy were conserved throughout the run.

Extended data is available along with the underlaying data within the file below : 










EXTENDED_DATA_Supp_material_PySteMoDA_v2.docx
DOI: 10.15468/dl.56wna9
title: Occurrence Download

description: A dataset containing 733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucocarpus perfoliatus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 733 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019095-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ttevu
title: Occurrence Download

description: A dataset containing 68816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Continent is Oceania",
 "Country is Australia",
 "Month is one of (July, August)",
 "Year 2000-2026"
 ]
}

 The dataset includes 68816 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019085-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gagejj
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Rubus adenotrichus"
 ]
}

 The dataset includes 73 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019096-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ku8zps
title: Occurrence Download

description: A dataset containing 199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microcarpaea minima",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 199 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019097-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8t2c7
title: Occurrence Download

description: A dataset containing 451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "DatasetKey is Otter (Lutra lutra), Outer Hebrides",
 "IucnRedListCategory is NT"
 ]
}

 The dataset includes 451 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019099-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14842118
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.93ekmz
title: Occurrence Download

description: A dataset containing 15842 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Senna siamea",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 15842 records from 288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019098-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18644165
title: catopsis_morreniana_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.j74qwz
title: Occurrence Download

description: A dataset containing 735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mimulus gracilis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 735 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019100-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66zcx3
title: Occurrence Download

description: A dataset containing 5031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sophora tomentosa",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 5031 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019102-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18644166
title: catopsis_morreniana_decontaminated_FSCR.fasta.gz