cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4562104
title: Selection in space and time: individual tree growth is adapted to tropical forest gap dynamics

description: In the present study, we assessed genotypic diversity within closely-related sympatric tree species belonging to the widespread tropical tree species complex <em>Symphonia globulifera</em>. We addressed the fine-scale spatial and temporal genetic adaptations of individuals through differential growth strategies in response to forest gap dynamics. We finally compared the breadth of successional niches encountered by <em>Symphonia</em> species to other locally abundant species. Combining tree diameter censuses, indirect measures of light environment of the recent past and present, and single nucleotide polymorphisms (SNPs), we used population genomics, environmental association analyses, genome wide association and growth modelling to address the following questions: Are individual genotypes structured by the mosaic of light and competition environments resulting from forest gap dynamics? Is the growth of individuals determined by genotypes? Is there an association between genotypic adaptations to gap dynamics and to growth? How are genotypic adaptations to gap dynamics and to growth structured in time, i.e., across life stages? Are breadths of successional niches for <em>Symphonia</em> species wider than those of other locally abundant species? Find the analyses here : https://sylvainschmitt.github.io/GOING/introduction.html
DOI: 10.17028/rd.lboro.17091698
title: Supplementary Information Files for Quantifying the impact of heat on human physical work capacity; part III: the impact of solar radiation varies with air temperature, humidity, and clothing coverage

description: Supplementary Information Files for Quantifying the impact of heat on human physical work capacity; part III: the impact of solar radiation varies with air temperature, humidity, and clothing coverage<br>Heat stress decreases human physical work capacity (PWC), but the extent to which solar radiation (SOLAR) compounds this response is not well understood. This study empirically quantifed how SOLAR impacts PWC in the heat, considering wide, but controlled, variations in air temperature, humidity, and clothing coverage. We also provide correction equations so PWC can be quantifed outdoors using heat stress indices that do not ordinarily account for SOLAR (including the Heat Stress Index, Humidex, and Wet-Bulb Temperature). Fourteen young adult males (7 donning a work coverall, 7 with shorts and trainers) walked for 1 h at a fxed heart rate of 130 beats∙min−1, in seven combinations of air temperature (25 to 45°C) and relative humidity (20 or 80%), with and without SOLAR (800 W/m2 from solar lamps). Cumulative energy expenditure in the heat, relative to the work achieved in a cool reference condition, was used to determine PWC%. Skin temperature was the primary determinant of PWC in the heat. In dry climates with exposed skin (0.3 Clo), SOLAR caused PWC to decrease exponentially with rising air temperature, whereas work coveralls (0.9 Clo) negated this efect. In humid conditions, the SOLAR-induced reduction in PWC was consistent and linear across all levels of air temperature and clothing conditions. Wet-Bulb Globe Temperature and the Universal Thermal Climate Index represented SOLAR correctly and did not require a correction factor. For the Heat Stress Index, Humidex, and Wet-Bulb Temperature, correction factors are provided enabling forecasting of heat efects on work productivity.<br>
DOI: 10.17028/rd.lboro.17091698.v1
title: Supplementary Information Files for Quantifying the impact of heat on human physical work capacity; part III: the impact of solar radiation varies with air temperature, humidity, and clothing coverage

description: Supplementary Information Files for Quantifying the impact of heat on human physical work capacity; part III: the impact of solar radiation varies with air temperature, humidity, and clothing coverage<br>Heat stress decreases human physical work capacity (PWC), but the extent to which solar radiation (SOLAR) compounds this response is not well understood. This study empirically quantifed how SOLAR impacts PWC in the heat, considering wide, but controlled, variations in air temperature, humidity, and clothing coverage. We also provide correction equations so PWC can be quantifed outdoors using heat stress indices that do not ordinarily account for SOLAR (including the Heat Stress Index, Humidex, and Wet-Bulb Temperature). Fourteen young adult males (7 donning a work coverall, 7 with shorts and trainers) walked for 1 h at a fxed heart rate of 130 beats∙min−1, in seven combinations of air temperature (25 to 45°C) and relative humidity (20 or 80%), with and without SOLAR (800 W/m2 from solar lamps). Cumulative energy expenditure in the heat, relative to the work achieved in a cool reference condition, was used to determine PWC%. Skin temperature was the primary determinant of PWC in the heat. In dry climates with exposed skin (0.3 Clo), SOLAR caused PWC to decrease exponentially with rising air temperature, whereas work coveralls (0.9 Clo) negated this efect. In humid conditions, the SOLAR-induced reduction in PWC was consistent and linear across all levels of air temperature and clothing conditions. Wet-Bulb Globe Temperature and the Universal Thermal Climate Index represented SOLAR correctly and did not require a correction factor. For the Heat Stress Index, Humidex, and Wet-Bulb Temperature, correction factors are provided enabling forecasting of heat efects on work productivity.<br>
DOI: 10.6084/m9.figshare.16985323.v1
title: Saved Objects

description: Cropped tumour region from CT scan images
DOI: 10.21223/pruoeg/tpbbsv
title: 01_DataSet_Papas Puño de Hierro La Libertad_2021.tab

description: :unav
DOI: 10.21223/pruoeg/7wj5u1
title: 02_Datadictionary_PPH La Libertad_2021.tab

description: :unav
DOI: 10.21223/pruoeg/9g0zcc
title: 03_Cuestionario_Encuesta_EvaluacionPPH_20 Jul_2021.docx

description: :unav
DOI: 10.14278/rodare.362
title: Local void fraction and pressure drop data for horizontal annular flow through orifice

description: This dataset combines multiple measurements form air-water horizontal annular flow experiments in a pipe (case A) and a pipe with circular orifice with \({d^2 / D^2} = 0.6\) (case B). Measurements where taken at superficial Reynolds numbers of Re=25000 for the gas phase and Re =4090 for the liquid phase. The following data are included for each case: linear pressure drop between two points (case A), four points (case B) measured with split-range differential pressure transducers at 5Hz time-averaged local liquid volume fraction distribution in cylindrical and Cartesian coordinates reconstructed from X-ray microtomography projections reconstructed pipe axis coordinates and pipe radius Python code to calculate secondary validation parameters (e.g. film thickness distribution) from primary data The detailed 3D data is intended for validation of computational fluid dynamics codes based on phase-averaged variables such as the Euler-Euler approach.
DOI: 10.5281/zenodo.5595037
title: Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases

description: Protein-protein interactions (PPIs) play an ubiquitous and fundamental role in all biological processes. Information on PPIs described in the literature is annotated and made available by several protein-interaction databases. Because most databases have their own curation rules and priorities, they often annotate overlapping sets of publications, which leads to redundancies. We developed a semantic-based approach which enables to accurately detect redundancies within PPI datasets from multiple databases. We applied this approach to assemble a "reproducible interactome", with PPIs supported by at least two methods or publications.
DOI: 10.5281/zenodo.5595036
title: Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases

description: Protein-protein interactions (PPIs) play an ubiquitous and fundamental role in all biological processes. Information on PPIs described in the literature is annotated and made available by several protein-interaction databases. Because most databases have their own curation rules and priorities, they often annotate overlapping sets of publications, which leads to redundancies. We developed a semantic-based approach which enables to accurately detect redundancies within PPI datasets from multiple databases. We applied this approach to assemble a "reproducible interactome", with PPIs supported by at least two methods or publications.
DOI: 10.25345/c5400r
title: MassIVE MSV000088469 - Tahlan and Dufour Ocean Sediments
title: Ocean sediments from Arctic and Gulf of Maine were analyzed for metabolomics
DOI: 10.6084/m9.figshare.14723454.v1
title: A new Tithonian ophthalmosaurid ichthyosaur from Coahuila in northeastern Mexico

description: Historically, Mexican Jurassic ichthyosaurs have been referred to European representatives of the cosmopolitan family-level clade Ophthalmosauridae. Here, we describe one of the most skeletally complete Mexican ichthyosaur fossils discovered to date. This specimen was recovered from Late Jurassic (Tithonian) deposits of the La Caja Formation exposed near Gómez Farias in the Saltillo municipality of Coahuila, northern Mexico. The unique morphology of the external nasal opening, which is sub-divided by the dorsal process of the maxilla, an anteroposteriorly elongate lacrimal, and the presence of an elongate linear contact between the lacrimal and prefrontal identify these remains as a new genus and species—<i>Parrassaurus yacahuitztli</i> gen. et sp. nov. Other diagnostic character states include an extremely elongate prenarial rostrum, a proportionately large subnarial versus supranarial process on the premaxilla, anterior bordering of the supratemporal fenestra by the frontal, and an articular contact between the humerus and intermedium that separates the ulna and radius. <i>Parrassaurus yacahuitztli</i> represents the second platypterygiine taxon recorded from Mexico to date, and thus demonstrates a greater diversity of North American ophthalmosaurids than has been previously suspected. <i>Jair Israel Barrientos-Lara* [j4ir@me.com] and Jesús Alvarado-Ortega [alvarado@geologia.unam.mx], Instituto de Geología, Universidad Nacional Autónoma de México, Circuito de la Investigación S/N, Ciudad Universitaria, Delegación Coyoacán, Ciudad de México, 04510 México.</i>
DOI: 10.6084/m9.figshare.14870051.v1
title: <i>Gariwerdichnus warreni</i> igen. et isp. nov. — probable giant myriapod burrows from Late Silurian fluvial channels in the Grampians Group, Western Victoria, Australia

description: Large Late Silurian burrows are preserved in fluviatile trough cross-bedded sandstones at Mount Bepcha and Mount William in the Grampians in western Victoria (Australia). These burrows have ventral surfaces with two parallel grooves likely formed by the trace-makers’ paired legs as they burrowed through dunes on braided-river beds, probably after avulsion of sandy channels. The burrows are morphologically distinct from previously described burrows and a new ichnogenus <i>Gariwerdichnus</i> igen. nov. containing a single new ichnospecies <i>G. warreni</i> isp. nov. is erected. The size of the burrows, together with their ridged ventral surface, rounded dorsal surface with large dorsolateral protuberances, and meniscate backfill, point towards giant myriapods as the tracemakers. This conclusion is further supported by the presence of large <i>Diplichnites</i> isp. (including <i>D. gouldi</i>) trackways of comparable size in a stratigraphically higher unit at Mount Bepcha; large <i>D. gouldi</i> are typically attributed to giant myriapods. Early myriapod groups that could have formed <i>G. warreni</i> include eoarthropleurids, arthropleurids, or a <i>Bennettarthra-</i>like organism. <i>Chris Gouramanis [</i><i>chris.gouramanis@anu.edu.au</i><i>], Research School of Earth Sciences, The Australian National University, Australian Capital Territory, 0200, Australia; Anthony, J. Martin [</i><i>geoam@emory.edu</i><i>], Department of Environmental Sciences, Emory University, Atlanta, Georgia, 30322, USA; John A. Webb [</i><i>john.webb@latrobe.edu.au</i><i>], Department of Ecology, Environment and Evolution, La Trobe University, Bundoora, Victoria, 3086, Australia.</i>
DOI: 10.6084/m9.figshare.14723454
title: A new Tithonian ophthalmosaurid ichthyosaur from Coahuila in northeastern Mexico

description: Historically, Mexican Jurassic ichthyosaurs have been referred to European representatives of the cosmopolitan family-level clade Ophthalmosauridae. Here, we describe one of the most skeletally complete Mexican ichthyosaur fossils discovered to date. This specimen was recovered from Late Jurassic (Tithonian) deposits of the La Caja Formation exposed near Gómez Farias in the Saltillo municipality of Coahuila, northern Mexico. The unique morphology of the external nasal opening, which is sub-divided by the dorsal process of the maxilla, an anteroposteriorly elongate lacrimal, and the presence of an elongate linear contact between the lacrimal and prefrontal identify these remains as a new genus and species—<i>Parrassaurus yacahuitztli</i> gen. et sp. nov. Other diagnostic character states include an extremely elongate prenarial rostrum, a proportionately large subnarial versus supranarial process on the premaxilla, anterior bordering of the supratemporal fenestra by the frontal, and an articular contact between the humerus and intermedium that separates the ulna and radius. <i>Parrassaurus yacahuitztli</i> represents the second platypterygiine taxon recorded from Mexico to date, and thus demonstrates a greater diversity of North American ophthalmosaurids than has been previously suspected. <i>Jair Israel Barrientos-Lara* [j4ir@me.com] and Jesús Alvarado-Ortega [alvarado@geologia.unam.mx], Instituto de Geología, Universidad Nacional Autónoma de México, Circuito de la Investigación S/N, Ciudad Universitaria, Delegación Coyoacán, Ciudad de México, 04510 México.</i>
DOI: 10.6084/m9.figshare.16615446
title: Revision of the Mesozoic freshwater fish clade Archaeomaenidae

description: Archaeomaenidae is a clade of Mesozoic freshwater fishes that includes the Australian species <i>Archaeomaene tenuis</i>, <i>Madariscus robustus</i> and <i>Wadeichthys oxyops</i>, the Antarctic <i>Oreochima ellioti</i>, the Chinese <i>Zaxilepis qinglongensis</i>, and the Mongolian <i>Gurvanichthys mongoliensis</i>. A comprehensive redescription of the genus <i>Archaeomaene</i> demonstrates that <i>Madariscus robustus</i> is a junior synonym of <i>Archaeomaene tenuis</i>, and thus constitutes an ontogenetic body-size series. A detailed revision of <i>W. oxyops</i> and <i>O. ellioti</i> also confirms their phylogenetic placements within Archaeomaenidae. Furthermore, the incompletely documented taxa <i>Z. qinglongensis</i> and <i>G. mongoliensis</i> are recognized as archaeomaenids. Archaeomaenidae therefore comprises a geographically widely distributed radiation of stem teleosts or teleosteomorphs that is closely related to the archetypal Eurasian clade Pholidophoridae. <i>Lynne Bean [Lynne.bean@anu.edu.au] Research School of Earth Sciences, Australian National University, 142 Mills Road, Acton, ACT 2601, Australia.</i>
DOI: 10.6084/m9.figshare.16615446.v1
title: Revision of the Mesozoic freshwater fish clade Archaeomaenidae

description: Archaeomaenidae is a clade of Mesozoic freshwater fishes that includes the Australian species <i>Archaeomaene tenuis</i>, <i>Madariscus robustus</i> and <i>Wadeichthys oxyops</i>, the Antarctic <i>Oreochima ellioti</i>, the Chinese <i>Zaxilepis qinglongensis</i>, and the Mongolian <i>Gurvanichthys mongoliensis</i>. A comprehensive redescription of the genus <i>Archaeomaene</i> demonstrates that <i>Madariscus robustus</i> is a junior synonym of <i>Archaeomaene tenuis</i>, and thus constitutes an ontogenetic body-size series. A detailed revision of <i>W. oxyops</i> and <i>O. ellioti</i> also confirms their phylogenetic placements within Archaeomaenidae. Furthermore, the incompletely documented taxa <i>Z. qinglongensis</i> and <i>G. mongoliensis</i> are recognized as archaeomaenids. Archaeomaenidae therefore comprises a geographically widely distributed radiation of stem teleosts or teleosteomorphs that is closely related to the archetypal Eurasian clade Pholidophoridae. <i>Lynne Bean [Lynne.bean@anu.edu.au] Research School of Earth Sciences, Australian National University, 142 Mills Road, Acton, ACT 2601, Australia.</i>
DOI: 10.6084/m9.figshare.14870051
title: <i>Gariwerdichnus warreni</i> igen. et isp. nov. — probable giant myriapod burrows from Late Silurian fluvial channels in the Grampians Group, Western Victoria, Australia

description: Large Late Silurian burrows are preserved in fluviatile trough cross-bedded sandstones at Mount Bepcha and Mount William in the Grampians in western Victoria (Australia). These burrows have ventral surfaces with two parallel grooves likely formed by the trace-makers’ paired legs as they burrowed through dunes on braided-river beds, probably after avulsion of sandy channels. The burrows are morphologically distinct from previously described burrows and a new ichnogenus <i>Gariwerdichnus</i> igen. nov. containing a single new ichnospecies <i>G. warreni</i> isp. nov. is erected. The size of the burrows, together with their ridged ventral surface, rounded dorsal surface with large dorsolateral protuberances, and meniscate backfill, point towards giant myriapods as the tracemakers. This conclusion is further supported by the presence of large <i>Diplichnites</i> isp. (including <i>D. gouldi</i>) trackways of comparable size in a stratigraphically higher unit at Mount Bepcha; large <i>D. gouldi</i> are typically attributed to giant myriapods. Early myriapod groups that could have formed <i>G. warreni</i> include eoarthropleurids, arthropleurids, or a <i>Bennettarthra-</i>like organism. <i>Chris Gouramanis [</i><i>chris.gouramanis@anu.edu.au</i><i>], Research School of Earth Sciences, The Australian National University, Australian Capital Territory, 0200, Australia; Anthony, J. Martin [</i><i>geoam@emory.edu</i><i>], Department of Environmental Sciences, Emory University, Atlanta, Georgia, 30322, USA; John A. Webb [</i><i>john.webb@latrobe.edu.au</i><i>], Department of Ecology, Environment and Evolution, La Trobe University, Bundoora, Victoria, 3086, Australia.</i>
DOI: 10.5063/f1xw4h7n
title: salting behavior of gas-phase water-soluble organic carbon in Baltimore, MD

description: This dataset contains the measurement data on salting behavior of ambient gas-phase water soluble organic gases in Baltimore, Maryland. It contains the data that is presented in the accepted manuscript described below.Pratap, V., Carlton, A.G., Christiansen, A. E., & Hennigan, C. J. (2021). Partitioning of ambient organic gases to inorganic salt solutions: influence of salt identity, ionic strength, and pH. Geophysical Research Letters, in press.
DOI: 10.14278/rodare.671
title: Dataset for the publication "Depth distribution of irradiation-induced dislocation loops in an Fe-9Cr model alloy irradiated with Fe ions: The effect of ion energy"

description: The dataset covers the raw/processed data required to reproduce the findings derived in the publication "Depth distribution of irradiation-induced dislocation loops in an Fe-9Cr model alloy irradiated with Fe ions: The effect of ion energy" by K. Vogel, P. Chekhonin, C. Kaden, M. Hernández-Mayoral, S. Akhmadaliev and F. Bergner. The whole set of original figures included in the publication is included as TIFF files. Supplementary material is provided as follows: G385_xMeV_loop_count.pptx: Powerpoint files related to the estimation of the loop concentrations for the 1 MeV and 5 MeV irradiations, Image_FIB_Position_Final.pptx: Powerpoint file showing the way how the 5 MeV FIB lamella was taken, Loop_size_xMeV_Slicey.xlsx: Excel files related to the sizing of loops utilized to derive the histograms of the loops sizes, Thickness_Profile_CBED_5MeV.xlsx: Thickness measurement for 5 MeV using the method of CBED.
DOI: 10.14278/rodare.670
title: Dataset for the publication "Depth distribution of irradiation-induced dislocation loops in an Fe-9Cr model alloy irradiated with Fe ions: The effect of ion energy"

description: The dataset covers the raw/processed data required to reproduce the findings derived in the publication "Depth distribution of irradiation-induced dislocation loops in an Fe-9Cr model alloy irradiated with Fe ions: The effect of ion energy" by K. Vogel, P. Chekhonin, C. Kaden, M. Hernández-Mayoral, S. Akhmadaliev and F. Bergner. The whole set of original figures included in the publication is included as TIFF files. Supplementary material is provided as follows: G385_xMeV_loop_count.pptx: Powerpoint files related to the estimation of the loop concentrations for the 1 MeV and 5 MeV irradiations, Image_FIB_Position_Final.pptx: Powerpoint file showing the way how the 5 MeV FIB lamella was taken, Loop_size_xMeV_Slicey.xlsx: Excel files related to the sizing of loops utilized to derive the histograms of the loops sizes, Thickness_Profile_CBED_5MeV.xlsx: Thickness measurement for 5 MeV using the method of CBED.
DOI: 10.6084/m9.figshare.16863262
title: Genotypes of informative alleles of 26 plasma samples from Sichuan using mutiplex of 15 SNP-NP markers.

description: 15 SNP-SNPs were studied in 26 families. Details of loci are shown in Supplementary Table 1. The characteristics of the donors are shown in Supplementary Table 2. Those reference DNA samples and amniotic fluid samples of 26 families were genotyped using the 15 SNP-SNP multiplex system to determine the informative markers for plasma DNA analysis. Specific genotypes of the informative markers for each family are shown in Supplementary Table 3A and B.
DOI: 10.6084/m9.figshare.16863262.v1
title: Genotypes of informative alleles of 26 plasma samples from Sichuan using mutiplex of 15 SNP-NP markers.

description: 15 SNP-SNPs were studied in 26 families. The characteristics of the donors are shown in Supplementary Table 1. Those reference DNA samples and amniotic fluid samples of 26 families were genotyped using the 15 SNP-SNP multiplex system to determine the informative markers for plasma DNA analysis. Specific genotypes of the informative markers for each family are shown in Supplementary Table 2A and B.
DOI: 10.6084/m9.figshare.17091803
title: Postoperative stool sample from colon cancer patient_2

description: Targeted bisulfite sequencing was conducted on five pairs of preoperative and postoperative sDNA samples from colon cancer patients to identify DNA methylation biomarkers.
DOI: 10.6084/m9.figshare.17091803.v1
title: Postoperative stool sample from colon cancer patient_2

description: Targeted bisulfite sequencing was conducted on five pairs of preoperative and postoperative sDNA samples from colon cancer patients to identify DNA methylation biomarkers.
DOI: 10.5281/zenodo.5734521
title: Scolopax bukidnonensis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5734520
title: Scolopax bukidnonensis SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.17091770
title: Postoperative stool sample from colon cancer patient_1

description: Targeted bisulfite sequencing was conducted on five pairs of preoperative and postoperative sDNA samples from colon cancer patients to identify DNA methylation biomarkers.
DOI: 10.6084/m9.figshare.17091770.v2
title: Postoperative stool sample from colon cancer patient_1

description: Targeted bisulfite sequencing was conducted on five pairs of preoperative and postoperative sDNA samples from colon cancer patients to identify DNA methylation biomarkers.
DOI: 10.6084/m9.figshare.17091770.v1
title: HSG-1.cpg_stat_bed.txt

description: Targeted bisulfite sequencing was conducted on five pairs of preoperative and postoperative sDNA samples from colon cancer patients to identify DNA methylation biomarkers.