cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.yza2hd
title: Occurrence Download

description: A dataset containing 796 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Chalcoscirtus infimus (Simon, 1868)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 796 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094164-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ueuk4j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dypsis caudata Beentje)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094165-240626123714530/datasets/export for details.
DOI: 10.15468/dl.eh6c3j
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Bembidion gautieri Netolitzky, 1921",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094166-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tu9n4x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Spermophorides reventoni Wunderlich, 1992",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094167-240626123714530/datasets/export for details.
DOI: 10.15468/dl.4r75uu
title: Occurrence Download

description: A dataset containing 5346 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Pardosa saltans Töpfer-Hofmann, 2000",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 5346 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094168-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16456518
title: Additional file 2 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 2: Supplemental Table 1. Genomic locations and PCR primers for luciferase assay constructs.
DOI: 10.6084/m9.figshare.16456518.v1
title: Additional file 2 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 2: Supplemental Table 1. Genomic locations and PCR primers for luciferase assay constructs.
DOI: 10.6084/m9.figshare.16456521
title: Additional file 3 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 3: Supplemental Table 2. Genes differentially expressed in the CCI and CFA models.
DOI: 10.6084/m9.figshare.16456521.v1
title: Additional file 3 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 3: Supplemental Table 2. Genes differentially expressed in the CCI and CFA models.
DOI: 10.6084/m9.figshare.16456524
title: Additional file 4 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 4: Supplemental Table 3. Genes encoding transcriptional regulators differentially expressed in both CCI and CFA models.
DOI: 10.6084/m9.figshare.16456524.v1
title: Additional file 4 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 4: Supplemental Table 3. Genes encoding transcriptional regulators differentially expressed in both CCI and CFA models.
DOI: 10.6084/m9.figshare.16456527
title: Additional file 5 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 5: Supplemental Table 4. Transcriptional factor motifs significantly enriched in differentially accessible regions after CCI.
DOI: 10.6084/m9.figshare.16456527.v1
title: Additional file 5 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 5: Supplemental Table 4. Transcriptional factor motifs significantly enriched in differentially accessible regions after CCI.
DOI: 10.6084/m9.figshare.16456530.v1
title: Additional file 6 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 6: Supplemental Table 5. Transcriptional factor motifs significantly enriched in differentially accessible regions after CFA.
DOI: 10.6084/m9.figshare.16456530
title: Additional file 6 of Global gene expression and chromatin accessibility of the peripheral nervous system in animal models of persistent pain

description: Additional file 6: Supplemental Table 5. Transcriptional factor motifs significantly enriched in differentially accessible regions after CFA.
DOI: 10.6084/m9.figshare.16456545
title: Additional file 2 of Identifying novel transcript biomarkers for hepatocellular carcinoma (HCC) using RNA-Seq datasets and machine learning

description: Additional file 2: Suppl. Table 1: The list of all HCC human cell models that were obtained from Cellosaurus.
DOI: 10.6084/m9.figshare.16456545.v1
title: Additional file 2 of Identifying novel transcript biomarkers for hepatocellular carcinoma (HCC) using RNA-Seq datasets and machine learning

description: Additional file 2: Suppl. Table 1: The list of all HCC human cell models that were obtained from Cellosaurus.
DOI: 10.6084/m9.figshare.16456548
title: Additional file 3 of Identifying novel transcript biomarkers for hepatocellular carcinoma (HCC) using RNA-Seq datasets and machine learning

description: Additional file 3: Suppl. Table 2: Random combinations of three transcripts to assess their accuracy for correctly identifying the healthy and HCC cell models using ML algorithms.
DOI: 10.6084/m9.figshare.16456548.v1
title: Additional file 3 of Identifying novel transcript biomarkers for hepatocellular carcinoma (HCC) using RNA-Seq datasets and machine learning

description: Additional file 3: Suppl. Table 2: Random combinations of three transcripts to assess their accuracy for correctly identifying the healthy and HCC cell models using ML algorithms.
DOI: 10.6084/m9.figshare.14992907
title: Additional file 17 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 17. Heatmaps for genes collected from several gene set related in TGFβ receptor signaling, Proteoglycan, and Chondrogenesis/Cartilage development were shown.
DOI: 10.6084/m9.figshare.14992907.v2
title: Additional file 17 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 17. Heatmaps for genes collected from several gene set related in TGFβ receptor signaling, Proteoglycan, and Chondrogenesis/Cartilage development were shown.
DOI: 10.6084/m9.figshare.14992916
title: Additional file 1 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 1. The information for donors.
DOI: 10.6084/m9.figshare.14992907.v1
title: Additional file 17 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 17. Heatmaps for genes collected from several gene set related in TGFβ receptor signaling, Proteoglycan, and Chondrogenesis/Cartilage development were shown.
DOI: 10.6084/m9.figshare.14992916.v2
title: Additional file 1 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 1. The information for donors.
DOI: 10.6084/m9.figshare.14992928
title: Additional file 2 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 2. The information for immunohistochemistry.
DOI: 10.6084/m9.figshare.14992928.v2
title: Additional file 2 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 2. The information for immunohistochemistry.
DOI: 10.6084/m9.figshare.14992931
title: Additional file 3 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 3. The information for qPCR primers.
DOI: 10.6084/m9.figshare.14992916.v1
title: Additional file 1 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 1. The information for donors.
DOI: 10.6084/m9.figshare.14992931.v2
title: Additional file 3 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 3. The information for qPCR primers.
DOI: 10.6084/m9.figshare.14992928.v1
title: Additional file 2 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 2. The information for immunohistochemistry.
DOI: 10.6084/m9.figshare.14992931.v1
title: Additional file 3 of Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human

description: Additional file 3. The information for qPCR primers.
DOI: 10.6084/m9.figshare.16456566
title: Additional file 2 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 2 Table S2. The detailed information of the survival-related AS events.
DOI: 10.6084/m9.figshare.16456566.v1
title: Additional file 2 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 2 Table S2. The detailed information of the survival-related AS events.
DOI: 10.6084/m9.figshare.16456569
title: Additional file 3 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 3 Table S3. The detail of the 404 splicing facters which had been experimentally validated or predicted by databases.
DOI: 10.6084/m9.figshare.16456569.v1
title: Additional file 3 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 3 Table S3. The detail of the 404 splicing facters which had been experimentally validated or predicted by databases.
DOI: 10.6084/m9.figshare.16456578
title: Additional file 5 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 5 Table S5. Flow chart for screening significant AS events of the risk prediction model.
DOI: 10.6084/m9.figshare.16456578.v1
title: Additional file 5 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 5 Table S5. Flow chart for screening significant AS events of the risk prediction model.
DOI: 10.6084/m9.figshare.16456584
title: Additional file 6 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 6 Table S6. Details of the formula used to calculate the risk score.
DOI: 10.6084/m9.figshare.16456584.v1
title: Additional file 6 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 6 Table S6. Details of the formula used to calculate the risk score.
DOI: 10.6084/m9.figshare.16456593
title: Additional file 8 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 8 Fig. S1 Bubble plot of top 20 survival associated AS events for different types. (A-G) bubble plots of top 20 survival associated AS events for AA(A), AD(B), AP(C), AT(D), ES(E), ME(F), and RI(G). Fig. S2. Pathway analysis and the regulation network between splicing factors and survival-related AS events of genes involved. (A) Gene ontology analysis for biological processes, cellular components, and molecular functions. (B) Reactome pathway analysis between splicing factors and survival-related AS events of genes involved. Fig. S3 Heatmap of the 7 survival-related AS events of the risk predicted model with prognosis and molecular subtypes. All 132 samples were included in the analysis. Each cluster has corresponding annotations. For the value of post-therapy, 0 means receiving no postoperative therapy, 1 means receiving only postoperative radiotherapy or receiving only postoperative chemotherapy, 2 means receiving both postoperative radiotherapy and chemotherapy. Fig. S4 Kaplan-Meier survival analysis and ROC curves of multivariate COX analysis for 34 wild-type IDH1 samples. (A) Kaplan-Meier survival curves for wild-type IDH1 samples grouped according to the risk score of our model. (B) ROC curves of wild-type IDH1 samples in overall survival of one, two and three years.
DOI: 10.6084/m9.figshare.16456593.v1
title: Additional file 8 of Genome-wide profiling of alternative splicing in glioblastoma and their clinical value

description: Additional file 8 Fig. S1 Bubble plot of top 20 survival associated AS events for different types. (A-G) bubble plots of top 20 survival associated AS events for AA(A), AD(B), AP(C), AT(D), ES(E), ME(F), and RI(G). Fig. S2. Pathway analysis and the regulation network between splicing factors and survival-related AS events of genes involved. (A) Gene ontology analysis for biological processes, cellular components, and molecular functions. (B) Reactome pathway analysis between splicing factors and survival-related AS events of genes involved. Fig. S3 Heatmap of the 7 survival-related AS events of the risk predicted model with prognosis and molecular subtypes. All 132 samples were included in the analysis. Each cluster has corresponding annotations. For the value of post-therapy, 0 means receiving no postoperative therapy, 1 means receiving only postoperative radiotherapy or receiving only postoperative chemotherapy, 2 means receiving both postoperative radiotherapy and chemotherapy. Fig. S4 Kaplan-Meier survival analysis and ROC curves of multivariate COX analysis for 34 wild-type IDH1 samples. (A) Kaplan-Meier survival curves for wild-type IDH1 samples grouped according to the risk score of our model. (B) ROC curves of wild-type IDH1 samples in overall survival of one, two and three years.
DOI: 10.6084/m9.figshare.16456602
title: Additional file 1 of Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes

description: Additional file 1. Supplementary Tables.
DOI: 10.6084/m9.figshare.16456602.v1
title: Additional file 1 of Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes

description: Additional file 1. Supplementary Tables.
DOI: 10.6084/m9.figshare.16456638
title: Additional file 1 of Temporal variations of magma composition, eruption style and rate at Fuji Volcano, Japan

description: Additional file 1: Table S1. List for the eruption products of Fuji Volcano during the Subashiri stage. Table S2. Compilation of major and trace element composition for the products of Fuji Volcano during the Subashiri stage.
DOI: 10.6084/m9.figshare.16456638.v1
title: Additional file 1 of Temporal variations of magma composition, eruption style and rate at Fuji Volcano, Japan

description: Additional file 1: Table S1. List for the eruption products of Fuji Volcano during the Subashiri stage. Table S2. Compilation of major and trace element composition for the products of Fuji Volcano during the Subashiri stage.
DOI: 10.6084/m9.figshare.16456695
title: Additional file 1 of Experiences and perception towards reproductive health education among secondary school teachers in South India

description: Additional file 1. Raw data of the research study.
DOI: 10.6084/m9.figshare.16456695.v1
title: Additional file 1 of Experiences and perception towards reproductive health education among secondary school teachers in South India

description: Additional file 1. Raw data of the research study.
DOI: 10.6084/m9.figshare.16456740
title: Additional file 17 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 17: Additional Material 17-Supplementary Table S2. HHPred analyses of pan-eukaryotic, including Giardia, CHMP7 N-termini.
DOI: 10.6084/m9.figshare.16456740.v1
title: Additional file 17 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 17: Additional Material 17-Supplementary Table S2. HHPred analyses of pan-eukaryotic, including Giardia, CHMP7 N-termini.
DOI: 10.6084/m9.figshare.16456764
title: Additional file 22 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 22: Additional Material 22-Supplementary Table 3. Single co-IP datasets derived from HA epitope-tagged variants for GiVPS20L, 25, 36 and CHMP7 expressed in transgenic G. intestinalis lines.
DOI: 10.6084/m9.figshare.16456764.v1
title: Additional file 22 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 22: Additional Material 22-Supplementary Table 3. Single co-IP datasets derived from HA epitope-tagged variants for GiVPS20L, 25, 36 and CHMP7 expressed in transgenic G. intestinalis lines.
DOI: 10.6084/m9.figshare.16456773.v1
title: Additional file 24 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 24: Additional Material 24-Supplementary Table 4. Pan eukaryotic ESCRT queries and databases used for retrieval of up-to-date genomes and transcriptomes for homology searching and phylogenetic analyses.
DOI: 10.6084/m9.figshare.16456776
title: Additional file 25 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 25: Additional Material 25-Supplementary Table 5. Oligonucleotides used for the cloning of Giardia ESCRT subunits of interest.
DOI: 10.6084/m9.figshare.16456776.v1
title: Additional file 25 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 25: Additional Material 25-Supplementary Table 5. Oligonucleotides used for the cloning of Giardia ESCRT subunits of interest.
DOI: 10.6084/m9.figshare.16456785.v1
title: Additional file 26 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 26: Additional Material 26-Supplementary File. Macro for statistical analysis of labelling signal overlap between ESCRT subunits and specified markers.
DOI: 10.6084/m9.figshare.16456773
title: Additional file 24 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 24: Additional Material 24-Supplementary Table 4. Pan eukaryotic ESCRT queries and databases used for retrieval of up-to-date genomes and transcriptomes for homology searching and phylogenetic analyses.
DOI: 10.6084/m9.figshare.16456785
title: Additional file 26 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 26: Additional Material 26-Supplementary File. Macro for statistical analysis of labelling signal overlap between ESCRT subunits and specified markers.
DOI: 10.6084/m9.figshare.16456791.v1
title: Additional file 2 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 2: Additional Material 2- Supplementary Table S1. Identified ESCRT components in Fornicata genomes and transcriptomes identified and validated using HMMER, tBLASTn, BLASTP, HHPRED, and CDD domain searches.
DOI: 10.6084/m9.figshare.16456791
title: Additional file 2 of Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata

description: Additional file 2: Additional Material 2- Supplementary Table S1. Identified ESCRT components in Fornicata genomes and transcriptomes identified and validated using HMMER, tBLASTn, BLASTP, HHPRED, and CDD domain searches.