cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4689826.v2
title: PhytoREF : a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

description: <b>Please note that the PhytoREF database has been now integrated into the PR2 database. Please use the files provided in the latest release (labelled 16S).</b><br><br>https://github.com/pr2database/pr2database/releases<br>---The PhytoREF data- base that contains plastidial 16S rDNA reference sequences that originate from a large diversity of eukaryotes representing all known major photosynthetic lineages. Stringent quality filtering and a phylogeny-based taxonomic classifica- tion were applied for each 16S rDNA sequence. The database mainly focuses on marine microalgae, but sequences from land plants (representing half of the PhytoREF sequences) and freshwater taxa were also included to broaden the applicability of PhytoREF to different aquatic and terrestrial habitats. <br>PhytoREF is a new resource in molecular ecology to foster the discovery, assessment and monitoring of the diversity of photosynthetic eukaryotes using high-throughput sequencing.<br>We provide here files for use with mothur processing program in order to assign metabarcoding data sets.<br>The official web site is : http://phytoref.sb-roscoff.fr/<br><br><b>Files provided</b><br><br>phytoref_mothur version 1.0.fasta<br>phytoref_mothur version 1.0.taxo<br><br><b>Contacts</b>Johan Decelle (johan.decelle@ufz.de)<br>Colomban de Vargas (vargas@sb-roscoff.fr)<br>Daniel Vaulot (vaulot@sb-roscoff.fr)<br><b><br></b><b>Reference</b><br><br>Decelle J, Romac S, Stern RF, Bendif EM, Zingone A, Audic S, et al. PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Mol Ecol Resour. 2015;15: 1435–1445. doi:10.1111/1755-0998.12401<br>
DOI: 10.6084/m9.figshare.7200707.v1
title: KEMRI-CMR Data collected & analyzed.xls

description: These data presents the performance of KEMRI-CMR GCLP assessment performance, training conducted and number of non-conformities gathered during the implementation of QMS using GCLP standard at KEMRI-CMR to support medical research.<br>
DOI: 10.17632/zxmcf7553w
title: 2500 CT images of COVID-19 Lung

description: 2933 lung CT images of COVID-19 patients were obtained from previous publications, authoritative media reports, and public databases. Among them, 1752 cases were obtained from both domestic and foreign journals such as Sciencedirect, Nature, Springer Link, and China CNKI. 1012 cases were obtained from authoritative media reports such as the New York Times, Daily Mail (United Kingdom), The Times (United Kingdom), CNN, The Verge (United States), Avvenire (Italy), LaNuovaFerrara (Italy), People's Daily, Toutiao News, and Dr. Lilac. 68 cases were obtained from the sirm.org public database. 101 cases were obtained from a GitHub public database.
DOI: 10.6084/m9.figshare.19635573.v1
title: Supplementary Material for: Safety of Bronchoscopy after Acute Coronary Syndrome

description: <b><i>Background:</i></b> Bronchoscopy is a safe procedure which is frequently performed for the investigation of respiratory diseases. Current guidelines recommend to delay bronchoscopy for 4–6 weeks after acute coronary syndrome (ACS), as this period is theoretically considered at risk for new onset of ACS. We therefore aimed to evaluate the safety and the tolerance of bronchoscopy in patients with ACS (≤30 days) and to compare outcomes with matched controls. <b><i>Methods:</i></b> All consecutive patients who had a bronchoscopy performed in the first 30 days after an ACS in the bronchoscopy suite were included. A group of patients with ACS who did not undergo bronchoscopy (controls) were also included and matched for age, sex, type of ACS, and severity of ACS (GRACE score). <b><i>Results:</i></b> Of the 13,646 patients who underwent bronchoscopy between 2010 and 2019, 2,181 had an history of ACS and among those, 87 patients had an ACS (19 with STEMI, 52 with NSTEMI, and 16 unstable angina). Mean interval between ACS and bronchoscopy was of 10.1 ± 8.9 days. Systolic blood pressure and heart rate significantly increased and oxygen saturation significantly decreased during bronchoscopy. The most frequent adverse event was desaturation which occurred in 26% of patients. Reinfarction rate (1.1% vs. 2.3% <i>p</i> = 1.00) and all-cause 30-day mortality (2.3% vs. 4.6%; <i>p</i> = 0.68) were similar in patients who underwent bronchoscopy and in matched controls (<i>n</i> = 87). <b><i>Conclusion:</i></b> Our study reinforces the safety of bronchoscopy after ACS. When clinically indicated with potential benefits outweighing risks, ACS should not contraindicate bronchoscopy.
DOI: 10.6084/m9.figshare.23866866.v1
title: An LM Test for the Conditional Independence between Regressors and Factor Loadings in Panel Data Models with Interactive Effects

description: A huge literature on modeling cross-sectional dependence in panels has been developed using interactive effects (IE). One area of contention is the hypothesis concerned with whether the regressors and factor loadings are correlated or not. Under the null hypothesis that they are conditionally independent, we can still apply the consistent and robust two-way fixed effects estimator. As an important specification test we develop an LM test for both static and dynamic panels with IE. Simulation results confirm the satisfactory performance of the LM test in small samples. We demonstrate its usefulness with an application to a total of 22 datasets, including static panels with a small <i>T</i> and dynamic panels with serially correlated factors, providing convincing evidence that the null hypothesis is not rejected in
DOI: 10.6084/m9.figshare.25106663.v1
title: armyworm.novel.protein.fasta

description: armyworm.novel.protein.fasta
DOI: 10.6084/m9.figshare.28829411.v1
title: Consumer based brand equity: social network analysis

description: The dataset includes data that was analyzed using the social network analysis method for the brands in the sample unit.
DOI: 10.6084/m9.figshare.6994445.v1
title: displacement_energies.tar.bz2

description: <pre><code>Contains: mc_dsgdb9nsd_XXXXXX_corrected_YYY_Z_TYPE.txt ... Naming convention: dsgdb9nsd: The initial structure is from the QM9/GDB9 set. XXXXXX: The QM9 index. corrected: The structure was optimized at the wB97xD/6-31G(d) level of theory using Gaussian09. YYY: The number (YYY) of samples of each of the molecules fragments was used to train the machine. Z: The max number of heavy atoms in any fragments used to train the machine. TYPE: "disp": file contains RMSD displacements along each normal mode. "true": file contains the true QM wB97xD/6-31G(d) energy in kcal/mol. "pred": file contains the predicted energy in kcal/mol.</code></pre>
DOI: 10.6084/m9.figshare.953183.v2
title: LeBel (2010, S&I) Data and syntax

description: Data and syntax to reproduce the findings from LeBel (2010, Self & Identity), whereby higher correspondence between implicit and explicit self-esteem was found for individuals who completed the explicit self-esteem measure (Rosenberg scale) relatively more quickly. This pattern emerged for two implicit self-esteem measures, the name letter task (NLT) and the self-esteem implicit association test (SE-IAT). Also included are the complete set of materials for Study 1 and 2 (which were combined into one sample due to editorial request). The materials were implemented using Empirisoft's MediaLab and DirectRT experimental software (see study1Materials.zip and study2Materials.zip).
DOI: 10.17632/fjwcpndk3d
title: Analysis and modeling of SDS and DPC micelle SAXS data for membrane protein solution structure characterization

description: SAXS_DPC_absolute_intensities.zip and SAXS_SDS_absolute_intensities.zip folders contain absolute SAXS intensities in cm-1 of DPC and SDS micelles at different concentrations.
Analysed SAXS data are .csv files: "Data IQ over C" represents the absolute intensities normalized to surfactant concentrations for DPC and SDS; "Data I0-Na-RG" represents forward intensity, micelle aggregation number and radius of gyration for each DPC ans SDS concentration, obtained from Guinier analysis of SAXS curves IQ over C; "Data PDDF" corresponds to the pair-distance distribution function of DPC at 5 g.L-1 and SDS at 6.25 g.L-1; "Data Sasview" corresponds to the analytical modeling of the absolute intensities of DPC at 5 g.L-1 and SDS at 6.25 g.L-1.
All figures (.png) are those appearing in the Data In Brief article.
DOI: 10.25375/uct.11950107.v1
title: Children, Technology and Play (CTAP) Survey

description: The School of Education at the University of Cape Town (UCT) investigated children’s learning through digital play. The aim of the study was to explore the intersection between child play, technology, creativity and learning among children aged between 3 and 11 years. The study also identified skills and dispositions children develop through both digital and non-digital play. The data shared emerged from a survey of parents of children in the stated age group, with particular reference to the parents views on children's play practices, including time parents spent playing with their children, concerns parents had on time children spend playing on various technologies, types of play children in South Africa engaged in and the concerns of parents when children played with some electronic devices. The following data files are shared:<br>SA - Survey - Children, Technology and Play (CTAP) - Google Forms.pdfDescriptive Stats 2020.1.9 -Children Technology and Play SURVEY.xlsxParent Survey RAW PUBLIC DATA 2020.2.29 - Children Technology and Play Project.xlsxParent Survey RAW PUBLIC DATA 2020.2.29 - Children Technology and Play Project.csvParent Survey REPORT DATA 2020.2.29 - Children Technology and Play Project.xlsxParent Survey REPORT DATA 2020.2.29 - Children Technology and Play Project.csvParent Survey RAW and REPORT DATA SYNTAX 2020.2.29 - Children Technology and Play Project.sps<br>NOTE: This survey was adapted from Marsh, J. Stjerne Thomsen, B., Parry, B., Scott, F. Bishop, J.C., Bannister, C., Driscoll, A., Margary, T., Woodgate, A., (2019) Children, Technology and Play. UK Survey Questions. LEGO Foundation.
DOI: 10.6084/m9.figshare.24654371.v1
title: Antibiotic administration reduced intra-amniotic inflammation 7 days after preterm premature rupture of the membranes with intra-amniotic infection

description: Intra-amniotic infections increase the risk of preterm delivery and short- and long-term fetal morbidity; however, no consensus exists on the choice of antimicrobial agents as treatment for these infections. We aimed to examine the efficacy of intravenous administration of sulbactam/ampicillin (SBT/ABPC) and azithromycin (AZM) for intra-amniotic infection in patients with preterm premature rupture of membranes (PPROM). This study followed a single-centered retrospective cohort design. We compared changes in interleukin 6 (IL-6) levels and the load of <i>Ureaplasma</i> species DNA in the amniotic fluid between singleton pregnancy patients with intra-amniotic infection (Group A) and without either intra-amniotic inflammation (IAI) or microbial invasion of the amniotic cavity (MIAC) (Group B) who developed PPROM between week 22, day 0 and week 33, day 6 of gestation and maintained pregnancy for ≥7 d after diagnosis (August 2014 to April 2020). Patients in Group A were treated with SBT/ABPC and AZM, whereas those in Group B were treated with ABPC and AZM or clarithromycin. Thirty-one patients with IAI and 48 patients without either IAI or MIAC at diagnosis of PPROM underwent pregnancy/delivery management at our hospital. Following the study population selection, we evaluated six patients in Group A and 13 patients in Group B. Amniotic fluid IL-6 concentrations at the initial amniocentesis were high, ranging from 11.7 ng/mL to 139.2 ng/mL, indicating a state of severe IAI in all six patients in Group A. In five of the six patients in Group A, the amniotic fluid cultures during the first amniocentesis included <i>Ureaplasma</i> species only. In both groups, the amniotic fluid IL-6 concentration at the follow-up amniocentesis was lower than that at the initial amniocentesis (Group A: follow-up median 3.06 ng/mL [quartiles, 1.75–6.74], initial median 30.53 ng/mL [quartiles, 15.60–67.07], <i>p</i>＝.03; Group B: follow-up median 0.40 ng/mL [quartiles, 0.18–0.69], initial median 0.96 ng/mL [quartiles, 0.65–1.42], <i>p</i>＝.005); Group A showed a greater decrease than Group B (<i>p</i> &lt; .001). No difference was found between the microbial loads of <i>Ureaplasma</i> species DNA in the initial and follow-up amniocentesis (<i>p</i> = .13). In patients with PPROM and intra-amniotic infection, IL-6 levels in the amniotic fluid decreased significantly from before antimicrobial administration to day 7. This decrease is thought to be mainly due to the effects of intravenous AZM. The efficacy of AZM in patients with PPROM needs to be further confirmed <i>via</i> randomized controlled studies in the future.
DOI: 10.6084/m9.figshare.27138921.v1
title: The raw n-grams dataset for Rajeg et al.’s (2022) “The Spatial Construal of TIME in Indonesian: Evidence from Language and Gesture”

description: <b>How to cite</b>Rajeg, Gede Primahadi Wijaya (2024). The raw n-grams dataset for Rajeg et al.’s (2022) “The Spatial Construal of TIME in Indonesian: Evidence from Language and Gesture”. figshare. Dataset. https://doi.org/10.6084/m9.figshare.27138921<b>Overview</b>A dataset of non-tabulated (raw) n-grams (from 2-grams up to 5-grams) derived from a corpus file in the <i>Indonesian Leipzig Corpora Collection</i> (ILCC), that is the “ind_newscrawl_2016_1M-sentences.txt”, the latest addition to the ILCC when the project associated with the generation of these n-grams was started in 2018. These large datasets were generated using R via one of Monash University’s high-performance computing facilities, <b>MonARCH</b>. The datasets became the basis for the linguistic analyses in the following publication:Rajeg, Gede Primahadi Wijaya, Poppy Siahaan & Alice Gaby. 2022. The Spatial Construal of TIME in Indonesian: Evidence from Language and Gesture. <i>Linguistik Indonesia</i> 40(1). 1–24. https://doi.org/10.26499/li.v40i1.297.This repository also includes the R scripts used to create the n-grams. The key R package to produce the n-gram (including the corpus tokenisation) is quanteda (Benoit et al. 2018), supported by the suit of R packages from the tidyverse (Wickham et al. 2019), tidytext (Silge & Robinson 2017), and corplingr (Rajeg 2021). Line 60 onwards in the file <code>R-script-ngram-creation-2-4-grams.R</code> shows how to search/filter and tabulate the n-gram frequency for a given time noun (i.e., <i>tahun</i> ‘year’ in the example).<b>References</b>Silge, J., & Robinson, D. (2017). Text mining with R: A tidy approach (First edition). O’Reilly.Benoit et al., (2018). quanteda: An R package for the quantitative analysis of textual data. Journal of Open Source Software, 3(30), 774, https://doi.org/10.21105/joss.00774 https://quanteda.io.Wickham et al., (2019). Welcome to the Tidyverse. Journal of Open Source Software, 4(43), 1686, https://doi.org/10.21105/joss.01686Rajeg, G. P. W. (2021). corplingr: Tidy concordances, collocates, and wordlist. Open Science Framework (OSF). https://doi.org/10.17605/OSF.IO/X8CW4 https://github.com/gederajeg/corplingr/.
DOI: 10.6084/m9.figshare.27166386.v1
title: Equine colic microbiome

description: Colic in horses is a common condition that can affect different organs of the abdominal cavity. In recent years, attempts have been made to associate this pathology with changes that occur in the intestinal microbiome. Through a case-control study, we analyzed the intestinal microbiome of a group of healthy horses and another with colic by massive sequencing of 16S ribosomal RNA to observe the differences in the bacterial composition and functionality of these groups. The intestinal microbiomes of both groups are dominated by the phyla <i>Firmicuteota, Bacteroidota </i>and <i>Pseudomonadota</i>. The abundance of <i>Firmicuteota</i>was negatively correlated with <i>Pseudomonadota </i>and <i>Actinobacteriota</i>in horses with colic. The microbiome of equine colic was predicted to be enriched with aerobic respiration pathways and fatty acid and amino acid degradation, observations that indicate discrete but important differences in the intestinal microbiome of horses with colic, which correlate with a more pro-inflammatory microbial community.
DOI: 10.6084/m9.figshare.4299629.v1
title: Metadata - 97% OTU abundance table and OTU taxonomy - EMP Sweden

description: The metadata that belongs to the 97% OTU abundance table and OTU taxonomy - EMP Sweden - Greengenes taxonomy, OTUs clustered with average neighbour clustering at 97 % with mothur.
DOI: 10.6084/m9.figshare.8286005.v5
title: CO-ARBitrator Rev2 Nucleotide Fasta

description: Fasta file containing COI nucleotide sequences recovered from GenBank by CO-ARBitrator algorithm. See README for details.
DOI: 10.17632/nzjwm89336
title: Petrol note in Riesling – 1,1,6-trimethyl-1,2-dihydronaphthalene (TDN) selectively activates human odorant receptor OR8H1

description: Primary (normalized) luminescence data of odorant receptor function (screening experiments and concentration-response relations), and odorant receptor cell surface expression fluorescence data.
DOI: 10.6084/m9.figshare.14759783.v1
title: Additional file 1 of Using four decades of FDA orphan drug designations to describe trends in rare disease drug development: substantial growth seen in development of drugs for rare oncologic, neurologic, and pediatric-onset diseases

description: Additional file 1. Data Appendix.
DOI: 10.6084/m9.figshare.16641187.v1
title: 博士论文-上传数据

description: 限于篇幅，将博士论文部分参数上传。主要包含：1. 第二章实际交通测试系统的路径信息(节点组成)；2. 第三章点队列测试部分使用的交通网路径信息(路段组成)；3. 第五章实际交通测试系统的路径信息(节点组成)。
DOI: 10.6084/m9.figshare.22223806.v3
title: Supplementary data for "Heinrich event ice discharge and the future fate of the Atlantic Meridional Overturning Circulation"

description: This dataset contains the underlying uranium series data for the computation of mass flux via thorium normalization. The spatial range of the dataset is limited to the North Atlantic and the Arctic Ocean. The dataset extends from core-top to sediments dated 140 thousand years ago. In addition to the compilation of existing data, we also include new data generated from three cores - EW9303-GGC31 (50° 34.2’ N, 46° 21’W, water depth 1796 m), DY081-GVY005 (58° 36.6’ N, 43° 46.8’ W, water depth 1907 m), and V30-100 (44° 7.02’ N, 32° 30’ W, water depth 3519 m).The associated code used to analyze the compilation is also uploaded to a separate figshare repository (doi: 10.6084/m9.figshare.25633881). The associated GitHub has a tutorial and the latest updates: https://github.com/yz3062/Lit_thxs
DOI: 10.6084/m9.figshare.25393228.v1
title: Mettl14 KO and WT mouse single cell RNA sequencing

description: Without intervention, a considerable proportion of metabolic fatty liver disease (MAFLD) patients will progress from simple steatosis to metabolic steatohepatitis, liver fibrosis and even hepatocellular carcinoma. However, the molecular mechanisms that control progressive MAFLD have yet to be fully determined. Here, the N6-methyladenosine (m6A) methyltransferase METTL14 hepatocyte conditional knockout mouse model was created. In vivo and in vitro experiments were performed to identify the mechanism of MAFLD progression caused by low METTL14 expression in hepatocytes. In details, METTL14 downregulation decreased GLS2 by affecting the translation efficiency mediated by YTHDF1 in a m6A-depedent manner, which might help to form an oxidative stress microenvironment. Considering that the oxidative stress microenvironment of liver tissue is the basic feature of MAFLD-related liver tissue and the key factor in fostering the progression of inflammation, non-parenchymal cells of one KO and one WT mouse liver were used for single cell RNA sequencing (scRNA-seq). It was further revealed that METTL14/GLS2 downregulation recruited Cx3cr1+Ccr2+ monocyte-derived macrophages (Mo-macs). Further experiments revealed that CX3CR1 can activate the transcription of S100A4 via CX3CR1/MyD88/NF-κB signaling pathway in Cx3cr1+Ccr2+ Mo-macs. Restoration of METTL14 or GLS2, or blocking the above pathway such as inhibiting MyD88 could ameliorate liver injuries and fibrosis. Taken together, these findings indicate potential therapies for the treatment of MAFLD progression.
DOI: 10.6084/m9.figshare.28566368.v2
title: Prevalence and factors associated with anemia in adults in the UAE

description: Background: Anemia is defined as a condition in which the number of red blood cells or the hemoglobin concentration within them is lower than normal.Objectives: To determine the prevalence of anemia and the associated factors among adults residing in the UAE. The study also aims to assess the knowledge about anemia among the study population.Materials and Methods: A cross-sectional study was conducted among the adults residing in the UAE using a self-administered questionnaire. Data was analyzed using SPSS version 29. A score of six and higher was considered above average, whereas below six was considered below average knowledge. A chi-square test and logistic regression were done.Results: Around 8.9% of participants currently had anemia. Around 100% of participants with secondary qualifications knew average compared to 93.5% of postgraduate participants with below-average knowledge about anemia. Consumption of dates, jaggery/molasses, beef liver, and sardines possessed statistically significant associations.Conclusion: 8.9% of adults in the UAE are diagnosed with anemia. Consumption of dates, jaggery/molasses, beef liver, and sardines are the statistically significant factors associated. Knowledge about anemia is associated with age, gender, education, employment, marital status and the emirate of residence.