cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23729/d72ecc40-3837-4d70-80cc-80cc0c4673f5
title: Stable water isotopes (18O and 2H) of bulk soil water and stem water at the Pallas catchment

description: This dataset includes isotopic values of bulk soil water and stem water samples collected from four different sampling sites within the Pallas catchment. Two sampling sites (SF1 and SF2) were set in forested areas with mineral soils, and another two (FP1 and FP2) in forested peatlands. The bulk soil samples were collected on 8 occasions between May 2019 and June 2020, while the stem samples were collected during the snow-free periods, 6 times overall. Bulk soil was sampled from 1 m deep soil cores, at 5 cm increments up to 50 cm of depth and at 10 cm increments from 50 - 100 cm depth. 1- 4 replicates per sampling site were collected during each sampling campaign, depending on field conditions. Stem samples were collected from 2 different mature trees of each of the present tree species at 2.5 - 3 m height. An extendable pruner was utilized to sample healthy, suberized stems with mature bark of 10–15 cm length and diameter larger than 2 cm, which were subsequently placed in 50 ml Eppendorf tubes made of biobased plastic, wrapped in laboratory film (Parafilm®) and stored in the cooling box. Isotopic composition of bulk soil water was measured by the direct equilibration method, using a cavity ring-down spectroscopy analyzer (Picarro L2140-i model, Picarro Inc., Santa Clara, CA, USA). The water from stem samples was extracted by cryogenic vacuum distillation method, and subsequently measured on Picarro L2130-i CRDS analyser. The main goal of the study was to examine spatiotemporal variability and seasonal origin of soil water at the soil-vegetation interface in Pallas catchment, and to assess how soil water isotopic seasonality is reflected in stem water of local tree species. The findings were published in https://onlinelibrary.wiley.com/doi/10.1002/hyp.14811
DOI: 10.5281/zenodo.8321334
title: EICC_Submesoscale

description: Data files and python scripts for 'Submesoscale processes associated with the East India Coastal Current'
DOI: 10.5281/zenodo.8321333
title: EICC_Submesoscale

description: Data files and python scripts for 'Submesoscale processes associated with the East India Coastal Current'
DOI: 10.15468/dl.xzsmat
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maerua glauca Chiov."
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051909-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gwfme
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia omeiensis Hemsl."
 ]
}

 The dataset includes 152 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051910-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrzx2f
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mallotus insularum (Airy Shaw) Slik"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051911-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hsqqbg
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melastoma minahassae Koord. ex K.Mey."
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051912-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmrtnw
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maerua grantii Oliv."
 ]
}

 The dataset includes 99 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051913-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqsrjj
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia ophelioides Hemsl."
 ]
}

 The dataset includes 21 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051915-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3d5p78
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mallotus intercedens Pax & K.Hoffm."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051914-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jy96y
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mertensia meyeriana J.F.Macbr."
 ]
}

 The dataset includes 23 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051916-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hedwhd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melastoma molkenboerii Miq."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051917-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sr34wg
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maerua holstii Pax"
 ]
}

 The dataset includes 64 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051918-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.as7edc
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia oppositifolia H.R.Fletcher"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051919-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cprnxb
title: Occurrence Download

description: A dataset containing 25828150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Anas platyrhynchos Linnaeus, 1758)"
 ]
}

 The dataset includes 25828150 records from 4991 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051896-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.6858881.v1
title: Additional file 10: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

description: Table S6. The transcriptome data for fiber development and stress responsive GhNAC genes. (XLSX 102 kb)
DOI: 10.6084/m9.figshare.6858896
title: Additional file 2: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

description: Primer sequences used for quantitative reverse transcription polymerase chain reaction (qRT-PCR). (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6858971.v1
title: MOESM14 of siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass

description: Additional file 14: Data S4. The CHH methylation of DMR covered genes annotated in the oxidation-reduction process and oxidoreductase in both leaf and root tissues.
DOI: 10.6084/m9.figshare.6859055.v1
title: Additional file 7: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

description: Table S4. The homologous gene pairs were identified in cotton. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7386551
title: Additional file 5: of Comprehensive proteome analyses of lysine acetylation in tea leaves by sensing nitrogen nutrition

description: Table S4. The numbers of identified modification sites per protein (XLSX 35 kb)
DOI: 10.6084/m9.figshare.6858911
title: Additional file 3: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

description: Sequences of candidate unigenes were identified to be involved in terpenoid biosynthesis. (TXT 108Â kb)
DOI: 10.6084/m9.figshare.6859034.v1
title: Additional file 6: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

description: Table S3. The chromosome location of NAC genes in G. hirsutum. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.6859076
title: Additional file 8: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

description: Table S5. Cis-element analysis of NAC genes in G. hirsutum. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.12101736.v1
title: Additional file 7 of Salicylic acid-primed defence response in octoploid strawberry ‘Benihoppe’ leaves induces resistance against Podosphaera aphanis through enhanced accumulation of proanthocyanidins and upregulation of pathogenesis-related genes

description: Additional file 7 : Table S1. RNA-Seq Reads and Reads Mapping. Table S2. Differentially expressed genes in 3DPI−/Control- (|log2FC| &gt; 1). Table S3. Differentially expressed genes in SAInfected/SAUninfected (|log2FC| &gt; 1). Table S4. Significant DEGs involved in flavonoid pathway between SAInfected/SAUninfected. Table S5. Significant DEGs (log2 fold change &gt; 3) in SAInfected/SAUninfected. Table S6. Primer sequences and parameters derived from RT-qPCR analysis.
DOI: 10.6084/m9.figshare.6859076.v1
title: Additional file 8: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

description: Table S5. Cis-element analysis of NAC genes in G. hirsutum. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.6858911.v1
title: Additional file 3: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

description: Sequences of candidate unigenes were identified to be involved in terpenoid biosynthesis. (TXT 108Â kb)
DOI: 10.6084/m9.figshare.6859034
title: Additional file 6: of Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton

description: Table S3. The chromosome location of NAC genes in G. hirsutum. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.13150564
title: Comprehensive analysis of transcriptome-wide m<sup>6</sup>A methylome in the anterior capsule of the lens of high myopia patients

description: To assess the m<sup>6</sup>A methylome in the anterior capsule of the lens of high myopia patients. MeRIP-seq and RNA-seq were performed to identify differences in the m<sup>6</sup>A methylomes and gene expression between anterior capsule of the lens of simple nuclear cataract patients (N) and nuclear cataract patients with high myopia (G). Expression of m<sup>6</sup>A-related enzymes was confirmed by quantitative real-time-PCR. ALKBH5 was downregulated in G. The observed m<sup>6</sup>A peak was identical to the conserved RRACH gmotif and was markedly correlated with two distinct coordinates. Differentially methylated genes were enriched in some pathways regulating the formation of extracellular matrix. These findings suggest that upregulation of m<sup>6</sup>A methylation may change fundus anatomy by regulating the composition of the extracellular matrix through encoding protein.
DOI: 10.35003/yspchc/uudtmq
title: fig4.pptx

description: :unav
DOI: 10.6084/m9.figshare.12097353.v1
title: Additional file 4 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S4A. Reproducing the smoking EWAS results on EWAS20. Table S4B. Additional smoking-associated DMPs detected by CAMT.
DOI: 10.6084/m9.figshare.13150564.v1
title: Comprehensive analysis of transcriptome-wide m<sup>6</sup>A methylome in the anterior capsule of the lens of high myopia patients

description: To assess the m<sup>6</sup>A methylome in the anterior capsule of the lens of high myopia patients. MeRIP-seq and RNA-seq were performed to identify differences in the m<sup>6</sup>A methylomes and gene expression between anterior capsule of the lens of simple nuclear cataract patients (N) and nuclear cataract patients with high myopia (G). Expression of m<sup>6</sup>A-related enzymes was confirmed by quantitative real-time-PCR. ALKBH5 was downregulated in G. The observed m<sup>6</sup>A peak was identical to the conserved RRACH gmotif and was markedly correlated with two distinct coordinates. Differentially methylated genes were enriched in some pathways regulating the formation of extracellular matrix. These findings suggest that upregulation of m<sup>6</sup>A methylation may change fundus anatomy by regulating the composition of the extracellular matrix through encoding protein.
DOI: 10.6084/m9.figshare.14199005
title: Biological mechanisms of growth performance and meat quality in porcine muscle tissue

description: Growth performance and meat quality are important traits for pig production. The aim of the present study was to investigate the molecular mechanisms underlying growth performance and meat quality, and to identify novel target molecules for predicting the growth performance and meat quality. The differentially expressed genes (DEGs) in Diannan small ears pigs (DSP) and Landrace pigs (LP) were assessed by RNA-sequencing analyzing technology. A total of 339 DEGs were obtained between DSP and LP. 146 DEGs were upregulated in LP compared with DSP and 193 DEGs were upregulated in DSP compared with LP. The DEGs were significantly enriched in 26 GO and 3 KEGG pathways. The protein–protein interaction (PPI) network with 201 nodes and 382 edges was constructed and 5 modules were extracted from the entire network. The identified upregulated expression of genes involved in glycolysis and myogenesis as well as extracellular matrix may be associated with fast body and muscle deposition rates in LP. Increased expression of genes involved in PPAR signaling pathway and fatty acid metabolism as well as oxidative phosphate processes could be related to the intramuscular fat deposition and meat quality in DSP. The present study may provide an improved understanding of the growth performance and meat quality.
DOI: 10.5281/zenodo.10621557
title: Data from: Beyond the Finish Line: Investigating Exercise-Induced Microvesicle and Exosomal MicroRNA Signatures for Healthy Aging in Elderly Sportsmen- A pilot study

description: While extracellular vesicles (EVs) released during exercise have emerged as key mediators of intercellular communication, potentially playing a pivotal role in disease prevention and healthy aging, there is a notable research gap in understanding the specific mechanisms through which exercise induced EVs, particularly their cargo of microRNAs (miRNAs), contribute to these processes. Previous studies have shown the potential of EVs and their miRNA cargo in various biological processes, but their roles in the context of exercise and aging, especially in a healthy elderly population, remain incompletely elucidated. Plasma samples were obtained from a group of healthy elderly sportsmen. Exosomes and microvesicles were isolated from platelet-free-plasma samples. The miRNAs within the EV isolates were subsequently extracted and quantified using qPCR. Our study reveals a distinct miRNA signature within exercise-derived extracellular vesicles, with several miRNAs showing significant alterations following exercise. Notably, these exercise-induced miRNAs were found to be involved in pathways related to inflammation, oxidative stress, and cellular senescence, with potential implications for cancer. Exercise-derived EVs and their cargo miRNAs hold promise for promoting healthy aging and preventing age-related diseases. Further research is needed to fully explore their therapeutic potential and elucidate the mechanisms underlying their health-enhancing effects.
description: Samples



Sample count: 4 (pre-exercise exosome, pre-exercise microvesicle, post-exercise exosome, post-exercise microvesicle)

Experimental Designs: stimulus or stress design

Experimental Factors: exercise stimulus


 Experimental Factors







Stimulus: single bout of incremental endurance exercise




 Source Characteristics





Organism: Homo sapiens

Developmental stage: adult

Disease: normal

Organism part: blood plasma

Fraction: extracellular vesicular exosome and microvesicle

Sex: male

Age: 61

Individual: pool of 9 individuals

Stimulus: single bout of incremental endurance exercise


Assay and Data



Technology: Array assay

Platform: QuantStudio 12K Flex Real-Time PCR System

Assay by Molecule: miRNA assay
DOI: 10.5281/zenodo.10621558
title: Data from: Beyond the Finish Line: Investigating Exercise-Induced Microvesicle and Exosomal MicroRNA Signatures for Healthy Aging in Elderly Sportsmen- A pilot study

description: While extracellular vesicles (EVs) released during exercise have emerged as key mediators of intercellular communication, potentially playing a pivotal role in disease prevention and healthy aging, there is a notable research gap in understanding the specific mechanisms through which exercise induced EVs, particularly their cargo of microRNAs (miRNAs), contribute to these processes. Previous studies have shown the potential of EVs and their miRNA cargo in various biological processes, but their roles in the context of exercise and aging, especially in a healthy elderly population, remain incompletely elucidated. Plasma samples were obtained from a group of healthy elderly sportsmen. Exosomes and microvesicles were isolated from platelet-free-plasma samples. The miRNAs within the EV isolates were subsequently extracted and quantified using qPCR. Our study reveals a distinct miRNA signature within exercise-derived extracellular vesicles, with several miRNAs showing significant alterations following exercise. Notably, these exercise-induced miRNAs were found to be involved in pathways related to inflammation, oxidative stress, and cellular senescence, with potential implications for cancer. Exercise-derived EVs and their cargo miRNAs hold promise for promoting healthy aging and preventing age-related diseases. Further research is needed to fully explore their therapeutic potential and elucidate the mechanisms underlying their health-enhancing effects.
description: Samples



Sample count: 4 (pre-exercise exosome, pre-exercise microvesicle, post-exercise exosome, post-exercise microvesicle)

Experimental Designs: stimulus or stress design

Experimental Factors: exercise stimulus


 Experimental Factors







Stimulus: single bout of incremental endurance exercise




 Source Characteristics





Organism: Homo sapiens

Developmental stage: adult

Disease: normal

Organism part: blood plasma

Fraction: extracellular vesicular exosome and microvesicle

Sex: male

Age: 61

Individual: pool of 9 individuals

Stimulus: single bout of incremental endurance exercise


Assay and Data



Technology: Array assay

Platform: QuantStudio 12K Flex Real-Time PCR System

Assay by Molecule: miRNA assay
DOI: 10.6084/m9.figshare.12097329
title: Additional file 1 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S1. Description of the Datasets.
DOI: 10.6084/m9.figshare.18393143.v1
title: Additional file 5 of Assembly and comparative analysis of the first complete mitochondrial genome of Acer truncatum Bunge: a woody oil-tree species producing nervonic acid

description: Additional file 5: Table S1. The repeat sequences distributions in the A. truncatum mitogenome genome.
DOI: 10.6084/m9.figshare.12097329.v1
title: Additional file 1 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S1. Description of the Datasets.
DOI: 10.6084/m9.figshare.12097353
title: Additional file 4 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S4A. Reproducing the smoking EWAS results on EWAS20. Table S4B. Additional smoking-associated DMPs detected by CAMT.
DOI: 10.6084/m9.figshare.12097344.v1
title: Additional file 3 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S3. Percentage of BH-significant DMPs recovered by IHW with different covariates.
DOI: 10.6084/m9.figshare.12097338.v1
title: Additional file 2 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S2. Informativeness statistics for the 14 covariates based on the omnibus test.
DOI: 10.6084/m9.figshare.12097344
title: Additional file 3 of Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

description: Table S3. Percentage of BH-significant DMPs recovered by IHW with different covariates.
DOI: 10.1285/i24212113v10i1p49
title: What are the causes of global inequality? An exploration of global inequality attributions in Germany and Argentina

description: In two studies, we explored explanations for global inequality in samples from Germany (N = 152) and Argentina (N = 138) using a qualitative approach. We visualized global inequality non-verbally through distorted world maps such that no causal attributions were inherent to the stimulus material. The maps depicted absolute poverty, child mortality, number of deaths due to floodings and access to drinking water. After the presentation of the maps, participants were asked to give explanations for the situations shown. The answers were coded and categorized using content analysis. We identified seven categories which were identical in both samples. The categories extend existing frameworks for poverty attribution and allow for a more fine-grained differentiation of the attribution dimensions. Moreover, we found differences in the frequencies with which the respective categories were mentioned. The German sample attributed more responsibility to the Global North, while the Argentinean sample focused more strongly on responsibilities of the Global South. The article presents a comprehensive set of qualitative data which can help to deepen our understanding of Global North as well as Global South citizens' global inequality attributions and serves as a basis for future quantitative studies in this realm.