cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29297546
title: ClinVar Variant ACMG Evidence Prediction Results

description: This CSV file contains predictions for three types of evidence (functional, population, and computational) for all ClinVar variant submissions. <br>The output CSV contains the following columns:<b>Identifier Columns</b><br>SCV: Submission accession number from ClinVar (format: SCV000000000)<br>VCV: Variation accession number from ClinVar (format: VCV000000000)<br>RCV: Record accession number from ClinVar (format: RCV000000000)<br>VariationID: Numerical identifier for the genetic variation<br><br><b>Genomic Coordinates</b><br>GRCh38_Chr: Chromosome number<br>GRCh38_Start: Start position on chromosome (GRCh38/hg38 assembly)<br>GRCh38_Stop: Stop position on chromosome (GRCh38/hg38 assembly)<br>GRCh38_ReferenceAllele: Reference allele sequence<br>GRCh38_AlternateAllele: Alternate allele sequence<br><br><b>Protein-Level Information</b><br>aapos: Amino acid position in the protein<br>aaref: Reference amino acid (single letter code)<br>aaalt: Alternate amino acid (single letter code)<br>gene: Gene symbol (e.g., BRCA1, TP53)<br><br><b>Original Classification</b><br>SubmissionClassification: Original classification provided by the submitter mainly includes pathogenic, likely pathogenic, uncertain significance, benign, likely benign, but also includes other values<br><br><b>Input Text</b><br>Comment: The textual comment/description provided with the variant submission that was used as input to the model<br><br><b>Model Predictions</b>has_evidence: does the text summary contain a specific type of evidence or not (TRUE or FALSE)evidence_confidence: model prediction confidence (0.0 to 1.0)predicted_evidence: if the text summary contains a specific type of evidence, model prediction of whether it is pathogenic or benign (P or B for population or computational evidence, PS3 or BS3 for functional evidence)B_Score: model prediction confidence for being a benign type of evidence (0.0 to 1.0)P_Score: model prediction confidence for being a pathogenic type of evidence (0.0 to 1.0)<br>Notes on Probability Scores Probability scores (B_Score, P_Score) sum to 1.0 for each row. Higher probability indicates greater model confidence for that classification. The predicted_evidence corresponds to the classification with the highest probability score.<br>Model Type: Fine-tuned transformer model for sequence classification<br>Input: Textual comments from variant submissionsTraining Data: ClinVar variant submissions with known classifications and mentions of ACMG evidence guideline
DOI: 10.6084/m9.figshare.29297546.v1
title: ClinVar Variant ACMG Evidence Prediction Results

description: This CSV file contains predictions for three types of evidence (functional, population, and computational) for all ClinVar variant submissions. <br>The output CSV contains the following columns:<b>Identifier Columns</b><br>SCV: Submission accession number from ClinVar (format: SCV000000000)<br>VCV: Variation accession number from ClinVar (format: VCV000000000)<br>RCV: Record accession number from ClinVar (format: RCV000000000)<br>VariationID: Numerical identifier for the genetic variation<br><br><b>Genomic Coordinates</b><br>GRCh38_Chr: Chromosome number<br>GRCh38_Start: Start position on chromosome (GRCh38/hg38 assembly)<br>GRCh38_Stop: Stop position on chromosome (GRCh38/hg38 assembly)<br>GRCh38_ReferenceAllele: Reference allele sequence<br>GRCh38_AlternateAllele: Alternate allele sequence<br><br><b>Protein-Level Information</b><br>aapos: Amino acid position in the protein<br>aaref: Reference amino acid (single letter code)<br>aaalt: Alternate amino acid (single letter code)<br>gene: Gene symbol (e.g., BRCA1, TP53)<br><br><b>Original Classification</b><br>SubmissionClassification: Original classification provided by the submitter mainly includes pathogenic, likely pathogenic, uncertain significance, benign, likely benign, but also includes other values<br><br><b>Input Text</b><br>Comment: The textual comment/description provided with the variant submission that was used as input to the model<br><br><b>Model Predictions</b>has_evidence: does the text summary contain a specific type of evidence or not (TRUE or FALSE)evidence_confidence: model prediction confidence (0.0 to 1.0)predicted_evidence: if the text summary contains a specific type of evidence, model prediction of whether it is pathogenic or benign (P or B for population or computational evidence, PS3 or BS3 for functional evidence)B_Score: model prediction confidence for being a benign type of evidence (0.0 to 1.0)P_Score: model prediction confidence for being a pathogenic type of evidence (0.0 to 1.0)<br>Notes on Probability Scores Probability scores (B_Score, P_Score) sum to 1.0 for each row. Higher probability indicates greater model confidence for that classification. The predicted_evidence corresponds to the classification with the highest probability score.<br>Model Type: Fine-tuned transformer model for sequence classification<br>Input: Textual comments from variant submissionsTraining Data: ClinVar variant submissions with known classifications and mentions of ACMG evidence guideline
DOI: 10.15468/dl.mz5b87
title: Occurrence Download

description: A dataset containing 761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Chamaecrista mucronata (Spreng.) H.S.Irwin & Barneby, Cassia mucronata Spreng.)"
 ]
}

 The dataset includes 761 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036963-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hm4rb9
title: Occurrence Download

description: A dataset containing 1827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Material citation, Occurrence evidence)",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Coordinate rounded, Geodetic datum assumed WGS84, Coordinate reprojected, Elevation min max swapped, Occurrence status inferred from individual count, Ambiguous institution)",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC, DD, NE)",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Magnolia Plum. ex L.",
 "Year 1000-2025"
 ]
}

 The dataset includes 1827 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036964-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfds27
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is COL.26.10_2",
 "TaxonKey is Testudines"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036962-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxbagr
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tomopterna delalandii (Tschudi, 1838)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 87 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036966-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/16f051004ae350d029a68c41723fdecf
title: Pika demography data for west knoll and Indian Peaks wilderness, 2008 - ongoing.

description: Pikas are captured, anesthetized, marked with colored ear-tags,
 non-lethally sampled, and released at point of capture during
 June-October. Study sites include a gradient of elevation and slope
 aspect, allowing a comparative study of pika response to variation
 in climate and sub-surface microclimate. Daily variation in snow
 cover and sub-surface temperatures are measured using data loggers
 placed within the territories of marked pikas. Focal territories are
 revisited at least once to characterize available vegetation via
 transect sampling and at least annually to service data loggers and
 record pika survival. Samples collected for genetic and
 physiological studies include ectoparasites, blood, saliva, urine,
 feces and hair as well as records of sex, stage, reproductive
 status, weight, foot length and body temperature.
DOI: 10.15468/dl.amexe3
title: Occurrence Download

description: A dataset containing 30557 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bryophyta",
 "Country is Canada",
 "StateProvince is Québec",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 30557 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036965-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7ae8d
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyprinella caerulea (Jordan, 1877)"
 ]
}

 The dataset includes 333 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036977-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v72h2n
title: Occurrence Download

description: A dataset containing 363969 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Insekten Sachsen"
 ]
}

 The dataset includes 363969 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036956-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkn5a4
title: Occurrence Download

description: A dataset containing 1673073 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-04-16",
 "EventDate is less than or equal to 2025-05-16",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 1673073 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036954-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4sdxx
title: Occurrence Download

description: A dataset containing 788 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Computarización de la Colección de Referencia de Nemátodos Fitopatógenos del Centro Nacional de Referencia Fitosanitaria de la Dirección General de Sanidad Vegetal"
 ]
}

 The dataset includes 788 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036981-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3phccg
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tomopterna delalandii (Tschudi, 1838)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 97 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036980-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zak2w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is AD AVH Data",
 "TaxonKey is Plantae",
 "HasCoordinate is true",
 {
 "not" : {
 "Issue" : [
 "is one of (Continent coordinate mismatch, Continent derived from coordinates, Coordinate accuracy invalid, Coordinate invalid, Coordinate out of range, Coordinate precision invalid, Coordinate precision/uncertainty mismatch, Coordinate reprojected, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate rounded, Coordinate uncertainty meters invalid, Country coordinate mismatch, Country derived from coordinates, Geodetic datum assumed WGS84, Geodetic datum invalid, Presumed negated latitude, Presumed negated longitude, Presumed swapped coordinate, Zero coordinate)"
 ]
 }
 },
 {
 "not" : {
 "Issue" : [
 "is one of (The scientific name differs on the record from that found in the checklist, The scientific name ID was not found in the checklist, The taxon concept ID was not found in the checklist, The taxon ID was not found in the checklist, Taxon match aggregate, Taxon match fuzzy, Taxon match higher rank, The backbone match found using the taxon IDs differs from what would be found if using the scientific names, Taxon match none, The scientific name ID was not used in backbone matching, The taxon concept ID was not used in backbone matching, The taxon ID was not used in backbone matching)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036979-250525065834625/datasets/export for details.
DOI: 10.15468/dl.z6hcpg
title: Occurrence Download

description: A dataset containing 788 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Computarización de la Colección de Referencia de Nemátodos Fitopatógenos del Centro Nacional de Referencia Fitosanitaria de la Dirección General de Sanidad Vegetal"
 ]
}

 The dataset includes 788 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036982-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15643529
title: Machine Learning Predicted Synthetic Rating Curve adjustment factor for improving Flood Inundation Mapping

description: This dataset consist of Machine Learning predicted Synthetic Rating Curve adjustment factor across CONUS. With the adjusted SRCs, we found improvement in FIM extents.
DOI: 10.5281/zenodo.15643530
title: Machine Learning Predicted Synthetic Rating Curve adjustment factor for improving Flood Inundation Mapping

description: This dataset consist of Machine Learning predicted Synthetic Rating Curve adjustment factor across CONUS. With the adjusted SRCs, we found improvement in FIM extents.
DOI: 10.15468/dl.t3qns4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tomopterna delalandii (Tschudi, 1838)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036984-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksj3a9
title: Occurrence Download

description: A dataset containing 9789996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "TaxonKey is Squamata"
 ]
}

 The dataset includes 9789996 records from 7960 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036900-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.146068
title: Ostracon hiératique Ifao - inv. 861_nu_2003_02082

description: Référence : nu_2003_02082<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.9wyngs
title: Occurrence Download

description: A dataset containing 6682 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ixodes ricinus Linnaeus, 1758"
 ]
}

 The dataset includes 6682 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0095413-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9td3e
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pungitius bussei (Warpachowski, 1888)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0333755-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.146069
title: Ostracon hiératique Ifao - inv. 1006_nu_2003_02083

description: Référence : nu_2003_02083<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.53qyvp
title: Occurrence Download

description: A dataset containing 1823 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nuchequula gerreoides (Bleeker, 1851)"
 ]
}

 The dataset includes 1823 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001961-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.146070
title: Ostracon hiératique Ifao - inv. 1003_nu_2003_02089

description: Référence : nu_2003_02089<br />Site : Deir el-Médina<br />Type : photographie<br />
DOI: 10.15468/dl.yszt5r
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Retinia taedana (Miller, 1978)",
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 95 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0130107-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.146071
title: Ostracon hiératique Ifao - inv. 1007_nu_2003_02099

description: Référence : nu_2003_02099<br />Site : Deir el-Médina<br />Secteur : Grand puits<br />Type : photographie<br />
DOI: 10.15468/dl.je6naf
title: Occurrence Download

description: A dataset containing 7372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euonymus japonicus Thunb., Euonymus latifolius (L.) Mill., Euonymus latifolius (L.) Mill.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 7372 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240486-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.146072
title: Ostracon hiératique Ifao - inv. 1002_nu_2003_02100

description: Référence : nu_2003_02100<br />Site : Deir el-Médina<br />Type : photographie<br />
DOI: 10.15468/dl.pcgnmt
title: Occurrence Download

description: A dataset containing 19797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magallana gigas (Thunberg, 1793)"
 ]
}

 The dataset includes 19797 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001986-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ak933
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendroctonus terebrans (A.G.Olivier, 1800)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0385922-210914110416597/datasets/export for details.
DOI: 10.15468/dl.7ehcug
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Andrographis echioides (L.) Nees",
 "HasCoordinate is true"
 ]
}

 The dataset includes 124 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035380-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.