cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.q5yge7
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "TaxonKey is Dalbergia pseudoviguieri Bosser & R.Rabev."
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022825-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10521976
title: OpenAIRE Graph: Dataset for research communities and initiatives

description: This dataset contains metadata records of the OpenAIRE Graph relevant for the research communities and initiatives collaborating with OpenAIRE and with a public Open Research Gateway on OpenAIRE CONNECT  as of December 2023.

Each file is a tar archive containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.10519297.




Research community name
File name
URL to the gateway


Argo France
argo-france.tar
https://argo-france.openaire.eu/


Aurora University Alliance
aurora.tar
https://aurora.openaire.eu


Transport Research (EC projects BE OPEN and SciLake)
beopen.tar
https://beopen.openaire.eu


COVID 19
covid-19.tar
https://covid-19.openaire.eu


DARIAH EU
dariah.tar
https://dariah.openaire.eu


Digital Humanities and Cultural Heritage
dh-ch.tar
https://dh-ch.openaire.eu


Virtual Twins in Health (EC project EDITH)
dth.tar
https://dth.openaire.eu


European Digital Innovation Hubs Network ADRIA
edih-adria.tar
https://edih-adria.openaire.eu


Energy Research (EC project Enermaps)
enermaps.tar
https://enermaps.openaire.eu


ELIXIR Greece
elixir-gr.tar
https://elixir-gr.openaire.eu


European University for Smart Urban Coastal Sustainability
eu-conexus.tar
https://eu-conexus.openaire.eu/


European University of Technology+
eut.tar
https://eut.openaire.eu/


EUTOPIA Alliance
eutopia.tar
https://eutopia.openaire.eu/


Sustainable Development Solutions Network - Greece 
sdsn-gr.tar
https://sdsn-gr.openaire.eu/


Knowmad Institut
knowmad_1.tar
https://knowmad.openaire.eu/


Atmospheric Research Community (EC project NEANIAS)
neanias-atmospheric.tar
https://neanias-atmospheric.openaire.eu/


Space Research Community (EC project NEANIAS)
neanias-space.tar
https://neanias-space.openaire.eu/


Underwater Research Community (EC project NEANIAS)
neanias-underwater.tar
https://neanias-underwater.openaire.eu/


Heritage Science (EC project IPERION HS)
heritage-science.tar
https://heritage-science.openaire.eu/


IPERION HS
iperionhs.tar
https://iperionhs.openaire.eu


North American Studies
north-american-studies.tar
https://north-american-studies.openaire.eu


FORTHEM Alliance
forthem.tar
https://forthem.openaire.eu


Rural Digital Europe (EC project DESIRA)
rural-digital-europe.tar
https://rural-digital-europe.openaire.eu/


Netherlands Research Portal
netherlands_1.tar
https://netherlands.openaire.eu/


LifeWathc ERIC
lifewatch-eric.tar
https://lifewatch-eric.openaire.eu/


European Marine Science
mes.tar
https://mes.openaire.eu


Neuroinformatics
ni.tar
https://ni.openaire.eu


Technological University Network
tunet.tar
https://tunet.openaire.eu
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.13135167
title: OpenAIRE Graph: Dataset for research communities and initiatives

description: This dataset contains metadata records of the OpenAIRE Graph relevant for the research communities and initiatives collaborating with OpenAIRE and with a public Open Research Gateway on OpenAIRE CONNECT  as of July 2024.

Each file is a tar archive containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.13121069




Research community name
File name
URL to the gateway


Argo France
argo-france.tar
https://argo-france.openaire.eu


Aurora University Alliance
aurora.tar
https://aurora.openaire.eu


Transport Research (EC projects BE OPEN and SciLake)
beopen.tar
https://beopen.openaire.eu


COVID 19
covid-19.tar
https://covid-19.openaire.eu


DARIAH EU
dariah.tar
https://dariah.openaire.eu


Digital Humanities and Cultural Heritage
dh-ch.tar
https://dh-ch.openaire.eu


Virtual Twins in Health (EC project EDITH)
dth.tar
https://dth.openaire.eu


European Digital Innovation Hubs Network ADRIA
edih-adria.tar
https://edih-adria.openaire.eu


-- NEW! -- European Geothermal Research and Innovation Search Engine  
egrise.tar
https://egrise.openaire.eu


Energy Research (EC project Enermaps)
enermaps.tar
https://enermaps.openaire.eu


ELIXIR Greece
elixir-gr.tar
https://elixir-gr.openaire.eu


European University for Smart Urban Coastal Sustainability
eu-conexus.tar
https://eu-conexus.openaire.eu


European University of Technology+
eut.tar
https://eut.openaire.eu


EUTOPIA Alliance
eutopia.tar
https://eutopia.openaire.eu


FORTHEM Alliance
forthem.tar
https://forthem.openaire.eu


Heritage Science (EC project IPERION HS)
heritage-science.tar
https://heritage-science.openaire.eu


IPERION HS
iperionhs.tar
https://iperionhs.openaire.eu


Knowmad Institut
knowmad_1.tar
https://knowmad.openaire.eu


LifeWathc ERIC
lifewatch-eric.tar
https://lifewatch-eric.openaire.eu


European Marine Science
mes.tar
https://mes.openaire.eu


Atmospheric Research Community (EC project NEANIAS)
neanias-atmospheric.tar
https://neanias-atmospheric.openaire.eu


Space Research Community (EC project NEANIAS)
neanias-space.tar
https://neanias-space.openaire.eu


Underwater Research Community (EC project NEANIAS)
neanias-underwater.tar
https://neanias-underwater.openaire.eu


Netherlands Research Portal
netherlands_1.tar
https://netherlands.openaire.eu


Neuroinformatics
ni.tar
https://ni.openaire.eu


North American Studies
north-american-studies.tar
https://north-american-studies.openaire.eu


Rural Digital Europe (EC project DESIRA)
rural-digital-europe.tar
https://rural-digital-europe.openaire.eu


Sustainable Development Solutions Network - Greece 
sdsn-gr.tar
https://sdsn-gr.openaire.eu


Technological University Network
tunet.tar
https://tunet.openaire.eu


-- NEW! -- University of the Arctic (UArctic)  
uarctic_1.tar
https://uarctic.openaire.eu
description: Find out the Open Research Gateways of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.3974605
title: OpenAIRE Research Graph: Dumps for research communities and initiatives.

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE. Each dataset is a gzip containing a file with one json per line. Each json is compliant to the schema available at DOI: 10.5281/zenodo.3974226
DOI: 10.5281/zenodo.4304132
title: OpenAIRE Research Graph: Dumps for research communities and initiatives.

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE. Each dataset is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at DOI: 10.5281/zenodo.3974226
DOI: 10.5281/zenodo.4439644
title: OpenAIRE Research Graph: Dumps for research communities and initiatives.

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE. Each dataset is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at DOI: 10.5281/zenodo.3974226
DOI: 10.5281/zenodo.4722961
title: OpenAIRE Research Graph: Dumps for research communities and initiatives

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE as of 12 April 2021. Each dump is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.4723499 Only the metadata records related to communities and initiatives with a public Open Research Gateway on OpenAIRE CONNECT are available in this deposition.
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.5095707
title: OpenAIRE Research Graph: Dumps for research communities and initiatives

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE as of June 2021. Each dump is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.4723499 Only the metadata records related to communities and initiatives with a public Open Research Gateway on OpenAIRE CONNECT are available in this deposition.
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.6413797
title: OpenAIRE Research Graph: Dumps for research communities and initiatives

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE as of March 2022. Each dump is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.6372977 Only the metadata records related to communities and initiatives with a public Open Research Gateway on OpenAIRE CONNECT are available in this deposition.
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.6638478
title: OpenAIRE Research Graph: Dumps for research communities and initiatives

description: This dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE and with a public Open Research Gateway on OpenAIRE CONNECT as of May 2022. Each dump is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.6372977
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.7492187
title: OpenAIRE Graph: Dumps for research communities and initiatives

description: This dataset contains dumps of the OpenAIRE Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE and with a public Open Research Gateway on OpenAIRE CONNECT as of December 2022. Each dump is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.7492313
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.5281/zenodo.8220599
title: OpenAIRE Graph: Dataset for research communities and initiatives

description: This dataset contains metadata records of the OpenAIRE Graph relevant for the research communities and initiatives collaborating with OpenAIRE and with a public Open Research Gateway on OpenAIRE CONNECT as of August 2023. Each dump is a tar file containing gzip files with one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.8238913
description: Find out the Open Research Gateway of the communities and initiatives based on this data at https://connect.openaire.eu. Data available via the Open Research Gateways may be more up-to-date than the dumps you find here.
DOI: 10.22002/st77m-26z98
title: E. coli pED208

description: E. coli with plasmid pED208
description: <strong>Tilt Series Date:</strong> 2014-12-16</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Laura Frost</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells arrived dead.</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-12-16-30/rawdata/</p>pED2080022.mrc,  Tilt Series (Pixel Size 0.63 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-12-16-30/rawdata/pED2080022.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED2080022_part121_3.rec,  Reconstruction (Pixel Size 2.52 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-12-16-30/3dimage_48835/pED2080022_part121_3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tqctb-g1845
title: Agrobacterium tumefaciens A139

description: Bald strain with GFP tagged VirB8
description: <strong>Tilt Series Date:</strong> 2014-01-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown on plate, scraped off and grown o/n in a drop</p>
<strong>Sample Preparation:</strong> Vitrobot manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-9/rawdata/</p>A139_drop0009.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-9/rawdata/A139_drop0009.mrc"
        > <i class="download icon"></i> Download </a></p>

        A139_drop0009_full.rec,  Reconstruction (Pixel Size 0.0 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-01-27-9/3dimage_49310/A139_drop0009_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pnrmj-fhm35
title: Agrobacterium delta rem

description: Agrobacterium tumefaciens non-motile delta rem mutant
description: <strong>Tilt Series Date:</strong> 2014-04-04</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Clay Fuqua</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown and induced at 19C in liquid</p>
<strong>Sample Preparation:</strong> manual blot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-04-4/rawdata/</p>delta_rem0039.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-04-4/rawdata/delta_rem0039.mrc"
        > <i class="download icon"></i> Download </a></p>

        delta_rem0039.rec,  Reconstruction (Pixel Size 2.24 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-04-04-4/3dimage_40969/delta_rem0039.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zbyqf-68614
title: Agro pJW58

description: wild-type Agro with plasmid-borne VirC1-GFP translational fusion under control of the virB promoter.  Kanamycin-resistant (150 to 300 ug/mL)
description: <strong>Tilt Series Date:</strong> 2014-03-05</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Clay Fuqua</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AB medium</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-05-20/rawdata/</p>Agro_pJW58_30005.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-05-20/rawdata/Agro_pJW58_30005.mrc"
        > <i class="download icon"></i> Download </a></p>

        Agro_pJW58_30005_full.rec,  Reconstruction (Pixel Size 1.6 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-05-20/3dimage_39745/Agro_pJW58_30005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dq3y3-1yd47
title: M-MuLV 17-5 infected MEFs

description: M-MuLV 17-5
description: <strong>Tilt Series Date:</strong> 2014-05-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> M-MuLV infected cells provided by Hung Fan (UC Irvine)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole MEFs infected with M-MuLV 17-5 were cultured on Au grids, blotted manually and plunge frozen.</p>
<strong>Sample Preparation:</strong> manually blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2014-05-04-2/3dimage_42140/</p>14may04_C171-2_HUVECs_NOINFX_AT1BT1_0002_full.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2014-05-04-2/3dimage_42140/14may04_C171-2_HUVECs_NOINFX_AT1BT1_0002_full.rec"
        > <i class="download icon"></i> Download </a></p>

        14may04_C171-2_HUVECs_NOINFX_AT1BT1_0002.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2014-05-04-2/rawdata/14may04_C171-2_HUVECs_NOINFX_AT1BT1_0002.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tvegy-py530
title: Bsubtilis_ponA_sacculi

description: Bsubtilis_sacculi_ponA
description: <strong>Tilt Series Date:</strong> 2012-02-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-44/rawdata/</p>try2MJsacculi0018.mrc,  Tilt Series (Pixel Size 0.95 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-44/rawdata/try2MJsacculi0018.mrc"
        > <i class="download icon"></i> Download </a></p>

        try2MJsacculi0018_part82_4.rec,  Reconstruction (Pixel Size 1.9 nm), 877.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-02-11-44/3dimage_26204/try2MJsacculi0018_part82_4.rec"
        > <i class="download icon"></i> Download </a></p>