cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.md2d8a
title: Occurrence Download

description: A dataset containing 573 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Centre for Plant Medicine Research (CPMR) medicinal plants dataset"
 ]
}

 The dataset includes 573 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000203-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/4u2z4j
title: Ephemeroptera of Luxembourg checklist 2024

description: This checklist was compiled via a study, 11,399 records of mayfly species (Insecta; Ephemeroptera) which have been accessed since 1990 for the Grand Duchy of Luxembourg. The checklist includes 52 species, however, three species have not been observed for more than 70 years: &lt;i&gt;Prosopistoma pennigerum&lt;/i&gt; (Müller, 1785), &lt;i&gt;Ephoron virgo&lt;/i&gt; (Olivier, 1791) and &lt;i&gt;Isonychia ignota&lt;/i&gt; (Walker, 1853). Particularly noteworthy are the first discovery of &lt;i&gt;Arthroplea congener&lt;/i&gt; Bengtsson, 1908 as well as the re-finding of &lt;i&gt;Caenis macrura&lt;/i&gt; (Stephens, 1836).

The study can be found under:
• Dolisy, D. & A.M. Weigand, 2024. Checklist of mayflies (Insecta: Ephemeroptera) of Luxembourg. Bulletin de la Société des naturalistes luxembourgeois 126 : 3-9. https://doi.org/10.59513/snl.2024.126.003
DOI: 10.6084/m9.figshare.28436360.v1
title: Supplementary Material for: IgA Nephropathy and the Risk of Primary Infections: A Swedish population-based cohort study

description: Background: IgA nephropathy is the most common primary kidney disease in the world and has a highly variable clinical presentation. While studies have indicated a link between glomerular disease and infections, large-scale studies on IgA nephropathy are missing. 
Methods: In our study, IgA nephropathy was defined as having a kidney biopsy record 1997-2011 in Sweden. Each IgA nephropathy patient was matched with five reference individuals based on age, sex, calendar year, and county of residence. We excluded individuals with earlier organ transplants, HIV, immunodeficiency, or end-stage kidney disease. Linear and Cox regressions, adjusted for age, sex, education and diabetes, were performed to analyze total infections and antimicrobial treatments in both patients and reference individuals. Sibling analyses were also performed. 
Results: The linear regression analysis revealed a significant association between IgA nephropathy and the overall frequency of infections compared to the general population (β=0.44; 95%CI: 0.35-0.53) and siblings (β=0.36; 95%CI:0.23-0.49). Similarly, antimicrobial prescriptions, especially antibiotics, were more common in IgA nephropathy compared to the general population and to siblings. Cox regression showed an elevated risk of any infection (adjusted hazard ratio (HR)=2.00; 95%CI 1.84-2.18) and sepsis (aHR=3.18; 95%CI 2.17-4.65) corresponding to one extra case of sepsis per 63 patients followed for 10 years. The strongest associations were seen for urinary tract infections; ear, nose, and throat infections; musculoskeletal and gastrointestinal infections. 
Conclusion: Conclusively, our study demonstrates an increased prevalence of infections and antibiotic prescriptions in IgA nephropathy patients. The increased risk of sepsis warrants clinical awareness and prevention.
DOI: 10.15468/dl.ejxgvj
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["3039516"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 618 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000204-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9jac7
title: Occurrence Download

description: A dataset containing 342 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["5395835"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 342 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000206-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgpeu8
title: Occurrence Download

description: A dataset containing 810 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["2976244"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 810 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000205-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3txbv
title: Occurrence Download

description: A dataset containing 1578 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Material citation, Specimen, Fossil)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx pardinus (Temminck, 1827)"
 ]
}

 The dataset includes 1578 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000207-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10776836
title: Smart Phones Dataset
DOI: 10.15468/dl.xhmpn4
title: Occurrence Download

description: A dataset containing 140464 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium album Mill.",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 140464 records from 503 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000192-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.endtjh
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["2959479"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 94 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000210-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3t9ev
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["3190160"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 478 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000208-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79jrym
title: Occurrence Download

description: A dataset containing 3244 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["8149923"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 3244 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000209-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wwhp85
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["7737109"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 103 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000215-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqpf9t
title: Occurrence Download

description: A dataset containing 12809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen)"
 ]
 }
 },
 "TaxonKey is Aepyceros melampus (Lichtenstein, 1812)"
 ]
}

 The dataset includes 12809 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000211-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rb9y7c
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["7313620"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 88 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000213-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9n2h5
title: Occurrence Download

description: A dataset containing 4263 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["3171169"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 4263 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000214-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5258/soton/d3339v1
title: Assessing the impact of gut dysbiosis on mental health outcomes in critical illness: A systematic review

description: This dataset has been updated. Please use the version at https://doi.org/10.5258/SOTON/D3339

VERSION 1
A systematic review to assess existing literature on the relationship between gut dysbiosis and mental health outcomes of intensive care survivors. A search strategy has been created and four databases including MEDLINE, Embase, Cochrane Library and PsycINFO were used.
DOI: 10.5281/zenodo.11398506
title: MHC_DATA and R_CODE

description: Associations among MHC genes, latitude, and haemosporidian infections in the rufous-collared sparrow (Zonotrichia capensis)
DOI: 10.5281/zenodo.14866238
title: GenBank Accession Numbers of Associations among MHC genes, latitude, and avian malaria infections in the rufous-collared sparrow (Zonotrichia capensis)

description: This dataset contains GenBank accession numbers for 21 MHC class I and 104 MHC class II antigen genes obtained from Zonotrichia capensis.
description: The major histocompatibility complex (MHC) is a genetic region in jawed vertebrates that contains key genes involved in the immune response. Associations between the MHC and avian malaria infections in wild birds have been observed and mainly explored in the Northern Hemisphere, while a general lack of information remains in the Southern Hemisphere. Here, we investigated the associations between the MHC genes and infections with Plasmodium and Haemoproteus blood parasites along a latitudinal gradient in South America. We sampled 93 rufous-collared sparrows (Zonotrichia capensis) individuals from four countries, Colombia, Ecuador, Peru, and Chile, and estimated MHC-I and MHC-II allele diversity. We detected between 1–4 (MHC-I) and 1–6 (MHC-II) amino acidic alleles per individual, with signs of positive selection. We obtained generalized additive mixed models to explore the associations between MHC-I and MHC-II diversity and latitude. We also explored the relationship between infection status and latitude/biome. We found a non-linear association between the MHC-II amino acidic allele diversity and latitude. Individuals from north Chile presented a lower MHC genetic diversity than those from other locations. We also found an association between deserts and xeric shrublands and a lower prevalence of Haemoproteus parasites. Our results support a lower MHC genetic in arid or semi-arid habitats in the region with the lower prevalence of Haemoproteus parasites.
DOI: 10.5281/zenodo.14866239
title: GenBank Accession Numbers of Associations among MHC genes, latitude, and avian malaria infections in the rufous-collared sparrow (Zonotrichia capensis)

description: This dataset contains GenBank accession numbers for 21 MHC class I and 104 MHC class II antigen genes obtained from Zonotrichia capensis.
description: The major histocompatibility complex (MHC) is a genetic region in jawed vertebrates that contains key genes involved in the immune response. Associations between the MHC and avian malaria infections in wild birds have been observed and mainly explored in the Northern Hemisphere, while a general lack of information remains in the Southern Hemisphere. Here, we investigated the associations between the MHC genes and infections with Plasmodium and Haemoproteus blood parasites along a latitudinal gradient in South America. We sampled 93 rufous-collared sparrows (Zonotrichia capensis) individuals from four countries, Colombia, Ecuador, Peru, and Chile, and estimated MHC-I and MHC-II allele diversity. We detected between 1–4 (MHC-I) and 1–6 (MHC-II) amino acidic alleles per individual, with signs of positive selection. We obtained generalized additive mixed models to explore the associations between MHC-I and MHC-II diversity and latitude. We also explored the relationship between infection status and latitude/biome. We found a non-linear association between the MHC-II amino acidic allele diversity and latitude. Individuals from north Chile presented a lower MHC genetic diversity than those from other locations. We also found an association between deserts and xeric shrublands and a lower prevalence of Haemoproteus parasites. Our results support a lower MHC genetic in arid or semi-arid habitats in the region with the lower prevalence of Haemoproteus parasites.
DOI: 10.5281/zenodo.14867408
title: GenBank Accession Numbers of History of Diversification and Adaptation from North to South Revealed by Genomic Data: Guanacos from the Desert to Sub-Antarctica

description: This dataset contains the accession numbers of BioSamples and SRA for 39 raw DNA sequences extracted from Lama guanicoe associated with the BioProject PRJNA1043467. Scientific names, localities, and the latitude/longitude are also included.
description: The increased availability of quality genomic data has greatly improved the scope and resolution of our understanding of the recent evolutionary history of wild species adapted to extreme environments and their susceptibility to anthropogenic impacts. The guanaco (Lama guanicoe), the largest wild ungulate in South America, is a good example. The guanaco is well adapted to a wide range of habitats, including the Sechura Desert, the high Andes Mountains to the north, and the extreme temperatures and conditions of Navarino Island to the south. Guanacos also have a long history of overexploitation by humans. To assess the evolutionary impact of these challenging habitats on the genomic diversity, we analyzed 38 genomes (∼10 to 16×) throughout their extensive latitudinal distribution from the Sechura and Atacama Desert to southward into Tierra del Fuego Island. These included analyses of patterns of unique differentiation in the north and geographic region further south with admixture among L. g. cacsilensis and L. g. guanicoe. Our findings provide new insights on the divergence of the subspecies ∼800,000 yr BP and document two divergent demographic trajectories and to the initial expansion of guanaco into the more southern portions of the Atacama Desert. Patagonian guanacos have experienced contemporary reductions in effective population sizes, likely the consequence of anthropogenic impacts. The lowest levels of genetic diversity corresponded to their northern and western limits of distribution and some varying degrees of genetic differentiation. Adaptive genomic diversity was strongly linked with environmental variables and was linked with colonization toward the south followed by adaptation.
description: This work was also supported by DID-Universidad del Bío-Bío (grant N°2020416 IF/R) and the Geryon cluster at the Centro de Astro-Ingeniería UC was extensively used for the calculations performed in the associated paper
DOI: 10.5281/zenodo.14867409
title: GenBank Accession Numbers of History of Diversification and Adaptation from North to South Revealed by Genomic Data: Guanacos from the Desert to Sub-Antarctica

description: This dataset contains the accession numbers of BioSamples and SRA for 39 raw DNA sequences extracted from Lama guanicoe associated with the BioProject PRJNA1043467. Scientific names, localities, and the latitude/longitude are also included.
description: The increased availability of quality genomic data has greatly improved the scope and resolution of our understanding of the recent evolutionary history of wild species adapted to extreme environments and their susceptibility to anthropogenic impacts. The guanaco (Lama guanicoe), the largest wild ungulate in South America, is a good example. The guanaco is well adapted to a wide range of habitats, including the Sechura Desert, the high Andes Mountains to the north, and the extreme temperatures and conditions of Navarino Island to the south. Guanacos also have a long history of overexploitation by humans. To assess the evolutionary impact of these challenging habitats on the genomic diversity, we analyzed 38 genomes (∼10 to 16×) throughout their extensive latitudinal distribution from the Sechura and Atacama Desert to southward into Tierra del Fuego Island. These included analyses of patterns of unique differentiation in the north and geographic region further south with admixture among L. g. cacsilensis and L. g. guanicoe. Our findings provide new insights on the divergence of the subspecies ∼800,000 yr BP and document two divergent demographic trajectories and to the initial expansion of guanaco into the more southern portions of the Atacama Desert. Patagonian guanacos have experienced contemporary reductions in effective population sizes, likely the consequence of anthropogenic impacts. The lowest levels of genetic diversity corresponded to their northern and western limits of distribution and some varying degrees of genetic differentiation. Adaptive genomic diversity was strongly linked with environmental variables and was linked with colonization toward the south followed by adaptation.
description: This work was also supported by DID-Universidad del Bío-Bío (grant N°2020416 IF/R) and the Geryon cluster at the Centro de Astro-Ingeniería UC was extensively used for the calculations performed in the associated paper
DOI: 10.15468/dl.u4nzcb
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sotalia fluviatilis (Gervais & Deville, 1853)",
 "Year 2000-2025"
 ]
}

 The dataset includes 153 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000216-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h8ms77
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["2771077"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 63 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000218-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqnrk9
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["4102897"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 149 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000220-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hk6j2f
title: Occurrence Download

description: A dataset containing 1002 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"in","key":"TAXON_KEY","values":["3190712"],"matchCase":false},{"type":"in","key":"LICENSE","values":["CC0 1.0","CC-BY 4.0"],"matchCase":false},{"type":"equals","key":"MEDIA_TYPE","value":"StillImage","matchCase":false}]}

 The dataset includes 1002 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000219-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.trchmj
title: Occurrence Download

description: A dataset containing 257 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eremorhax Roewer, 1934"
 ]
}

 The dataset includes 257 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000221-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.