cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18049
title: Amino Acid Variation In Hla Class Ii Proteins Is A Major Determinant Of Humoral Response To Common Viruses - Gwas Summary Results

description: Online Supplementary Dataset of the manuscript "Amino acid variation in HLA class II proteins is a major determinant of humoral response to common viruses": http://www.cell.com/ajhg/fulltext/S0002-9297(15)00372-9
description: Full author list in main text.
DOI: 10.5281/zenodo.18116
title: Picardmetrics: Reference Files

description: Reference files used to test picardmetrics:


	gencode.v19.annotation.refFlat
	gencode.v19.annotation.rRNA.interval_list
	iGenomes.UCSC.hg19.genome.fa


picardmetrics: https://github.com/slowkow/picardmetrics
DOI: 10.5281/zenodo.18182
title: Sets Of Chembl Compounds With High Or Low Confidence Activity Data

description: Two sets of compounds assembled from ChEMBL release 20 that were annotated with high or low confidence activity data were provided in separate files. For each compound in a file, the unique compound identifier (i.e., molregno), the number of targets in individual years (from 1976 to 2014) and the list of target annotations (if any) was given.
DOI: 10.5281/zenodo.13030
title: An Elaborate Data Set On Human Gait And The Effect Of Mechanical Perturbations

description: This data set includes measurements during trials of human walking on a treadmill with a movable base intended to provide data rich in content for the identification of the human's control system. The primary experiments were designed to longitudinally perturb the subject at the ground contact by randomly accelerating the belt. The marker locations (treadmill and human), treadmill accelerations, treadmill belt speeds, and the forces and moments from the dual force plates were measured during the trials.

PeerJ Article: https://peerj.com/articles/918

PeerJ Preprint: https://peerj.com/preprints/700/

Paper source repository: https://github.com/csu-hmc/perturbed-data-paper
DOI: 10.5281/zenodo.13032
title: 1000 Backlinks To Github.Com (01-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to github.com. The retrieval process was completed on 01-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.13101
title: Geodata: Populated Places For Vivo

description: This dataset contains information about populated places and other geographical entities ready to use in current research information system VIVO. It was created at University of Applied Sciences and Arts Hannover, Germany. It is successfully tested with VIVO 1.6 and 1.7.
DOI: 10.5281/zenodo.13137
title: 1000 Backlinks To Bit.Ly (03-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to bit.ly. The retrieval process was completed on 03-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.13138
title: 1000 Backlinks To Qq.Com (04-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to qq.com. The retrieval process was completed on 04-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.18389
title: Distance From Forest Edge In The Pantropics

description: distancefromforestedge_pantropics.zip - a zipped geotiff file in WGS84 coordinates whose pixel values indicate the distance in meters to the nearest forest edge as defined by: Baccini, A., Goetz, S.J., Walker, W.S., Laporte, N.T., Sun, M., Sulla-Menashe, D., Hackler, J., Beck, P.S.A., Dubayah, R., Friedl, M.A., Samanta, S., Houghton, R.A., 2012. Estimated carbon dioxide emissions from tropical deforestation improved by carbon-density maps. Nature Climate Change 2, 182–185.

regression_coefficients_as_shapefile - for calculating biomass storage within 100km grid cells across the pantropics. projected spatially as an ESRI Shapefile where the methods are defined as:

method 1: Biomass= θ_1-θ_2⋅exp(-θ_3⋅Distance)

method 2: Biomass= β_0+β_1⋅ln(Distance)

method 3: Biomass = \eta_0+\eta_1 * Distance
DOI: 10.5281/zenodo.18425
title: Dataset Accompanying Maldonando Et Al 2015 Global Ecology And Biogeography

description: Dataset containing species records of the plant tribe Cinchoneae (Rubiaceae). Three classes of records are identified: those downloaded from gbif.org, those that we accepted as correct, those that we rejected as correct, and those that we included from new sources. For details please see the original Open Access publication at http://onlinelibrary.wiley.com/doi/10.1111/geb.12326/abstract: 

Maldonado, C., C. Molina, A. Zizka, C. Persson, Taylor, C., J. Alban, E. Chilquillo, N. Rønsted, Antonelli A (2015). Estimating species diversity and distribution in the era of Big Data: To what extent can we trust public databases? Global Ecology and Biogeography. DOI: 10.1111/geb.12326
DOI: 10.5281/zenodo.18489
title: Dexmedetomidine Effects On Shivering And Core Temperature In Awake Normal Subjects

description: Ten normal adult human subjects received a rapid intravenous infusion of two liters of cold (4ºC) isotonic saline on two separate test days, and we measured their core body temperature, shivering, hemodynamics and sedation for two hours.  On one test day, fluid infusion was preceded by placebo infusion.  On the other test day, fluid infusion was preceded by 1.0 µg/kg bolus of dexmedetomidine over 10 minutes.
description: comma separated values
Publication in PLOS ONE : Dexmedetomidine reduces shivering during mild hypothermia in waking subjects
PONE-D-15-01706R1
DOI: 10.5281/zenodo.13139
title: 1000 Backlinks To Wikipedia.Org (04-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to wikipedia.org. The retrieval process was completed on 04-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.13140
title: 1000 Backlinks To Vimeo.Com (05-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to vimeo.com. The retrieval process was completed on 05-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.18490
title: Knowledge Base Of Two- And Three-Dimensional Activity Cliffs

description: The result of up-to-date surveys and systematic analyses of 2D-cliffs including clusters, 3D-cliffs, and extensions of 3D-cliffs is made freely available in four separate data files. These files contain the list of 2D-cliffs and cliff clusters, 3D-cliffs, 3D-cliff-MMPs, and superpositions of complex X-ray structures and 3D ligands for selected targets. The data organization and information is detailed in <em>README.doc</em>.
DOI: 10.5281/zenodo.18528
title: Destination  Choice  Model  Including  Panel  Datausing Wifi Localization In A Pedestrian Facility

description: A minimal example of a destination choice model including panel data on EPFL campus. It is based on the output of Danalet<em> et al. </em>(2014)<em>.</em> 

It runs on Pythonbiogeme. Some variables are removed from the dataset due to privacy issues. Thus, some parameters may not be significant.
description: {"references": ["Tinguely, L., M. de Lapparent, A. Danalet and M. Bierlaire (2015) Destination Choice Model including panel data using WiFi localization in a pedestrian facility, Swiss Transport Research Conference (STRC), (April).", "Danalet, A., B. Farooq and M. Bierlaire (2014) A Bayesian approach to detect pedestrian destination-sequences from WiFi signatures, Transportation Research Part C: Emerging Technologies, 44, 146\u2013170."]}
DOI: 10.5281/zenodo.18560
title: Neutralization Data And Aligned Env Sequences For Predicting Antibody Affinities Using Artificial Neural Networks

description: Sample file with neutralization data (IC<sub>50</sub>) for different antibodies and viral strains, adapted from J. Huang, G. Ofek, L. Laub, M. K. Louder, N. A. Doria-Rose, N. S. Longo, H. Imamichi, R. T. Bailer, B. Chakrabarti, S. K. Sharma, S.  M. Alam, T. Wang, Y. Yang, B. Zhang, S. A. Migueles, R. Wyatt, B. F. Haynes, P. D. Kwong, J. R. Mascola, and M. Connors, “Broad and potent neutralization of HIV-1 by a gp41-specific human antibody.,” <em>Nature</em>, vol. 491, no. 7424, pp. 406–12, Nov. 2012.

 

Aligned ENV sequences downloaded from the HIV Sequence Database (www.hiv.lanl.gov/content/sequence/HIV/mainpage.html). There are 4907 sequences and the alignment length is 1369.
DOI: 10.5281/zenodo.18562
title: [Mirror] Transcriptome Assemblies For Soapdenovo-Trans Paper

description: mirrored from ftp://public.genomics.org.cn/BGI/SOAPdenovo-Trans/SOAPdenovo-Trans_Supplementary_Assemblies.tar.gz to provide a faster CDN
DOI: 10.5281/zenodo.18599
title: Perceived Gender Ratings For High And Low Scorers On The Autism-Spectrum Quotient Consistent With The Extreme Male Brain Account Of Autism

description: Software required: SPSS

'Male faces data_final.sav' and 'Female faces data_final.sav' contain masculinity (for male faaces) and femininity (for female faces) ratings of face photographs. Each photograph is labelled as a variable (top row, third cell onwards) and subsequent rows represent ratings provide by each rater (E.g., first row of data represents ratings provided by rater for each of the photograph presented to him/her). 'Male voices data_final.sav' and 'Female voices data_final.sav' contain masculinity (for male voices) and femininity (for female voices) ratings of voice recordings. Data layout is the same as face data described above. Click on variable tab for details on each variable. 'AQ_rating_corr_face.sav' and 'AQ_rating_corr_voice.sav' contain mean ratings of male and female faces and voices, and their respective AQ scores.
DOI: 10.5281/zenodo.13234
title: Supporting Dataset For Manuscript: "Higher Rate Of Tuberculosis In Second Generation Migrants Compared To Native Residents In A Metropolitan Setting In Western Europe" (Plos One)

description: This is the supporting datafile for the manuscript entitled "Higher rate of tuberculosis in second generation migrants compared to native residents in a metropolitan setting in Western Europe" (Marx et al., PLoS ONE). The dataset includes anonymized, routinely collected notification data (variables labeled as "nd") for 314 individuals and anonymized survey data (i.e. data obtained through interviews; variables labeled as "sd") for a subset of 154 individuals. The data are published open-access, in accordance with the PLoS ONE data policy (2014).
DOI: 10.5281/zenodo.13236
title: Migration And Tuberculosis In Berlin (Dataset)

description: This is the supporting data file for the manuscript entitled "Higher rate of tuberculosis in second generation migrants compared to native residents in a metropolitan setting in Western Europe" (Marx et al., PLoS ONE). The dataset includes anonymized, routinely collected notification data (variables labeled as "nd") for 314 individuals and anonymized survey data (i.e. data obtained through interviews; variables labeled as "sd") for a subset of 154 individuals. The data are published open-access, in accordance with the PLoS ONE data policy (2014).
DOI: 10.5281/zenodo.13249
title: 1000 Backlinks To Adobe.Com (12-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to adobe.com. The retrieval process was completed on 12-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.13250
title: 1000 Backlinks To Statcounter.Com (13-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to statcounter.com. The retrieval process was completed on 13-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.18626
title: How Many Water Molecules Does It Take To Dissociate Hcl?

description: The potential energy surface of HCl/water clusters with two water molecules, with molecular geometry and vibrational frequencies obtained at the  CCSD(T) level using a Def2-TZVP basis.
DOI: 10.5281/zenodo.18762
title: Distribution Of Alternative Start Codons For Each Microbial Refseq Genome

description: Distributions of alternative start codons for each microbial Refseq genome.
DOI: 10.5281/zenodo.18764
title: Data And Software Associated With Phenostruct: Prediction Of Human Phenotype Ontology Terms Using Heterogeneous Data Sources

description: Data and software associated with the paper:

PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources
DOI: 10.5281/zenodo.18778
title: Streptorubin

description: Interactive table
DOI: 10.5281/zenodo.13287
title: Dppc_Slipids

description: MD simulation trajectory and related files for fully hydrated DPPC bilayer. Slipids force field (doi:10.1021/jp212503e) was used with Gromacs 4.6.6. Conditions: T=323K, 128 lipids, 3840 tip3p waters.
DOI: 10.5281/zenodo.18862
title: Delft Instrumented Bicycle Data And Videos

description: This is the data collected and analyzed in the following paper:

Kooijman, J. D. G.; Schwab, A. L. & Moore, J. K. Some Observations on Human Control of a Bicycle Proceedings of the ASME 2009 International Design and Engineering Technical Conferences & Computers and Information in Engineering Conference, 2009

It is in the a form to use with this software:

https://github.com/moorepants/DelftBicycleDataViewer
DOI: 10.5281/zenodo.18898
title: Red Queen Processes Drive Positive Selection On Major Histocompatibility Complex (Mhc) Genes

description: The dataset for the manuscript "Red Queen processes drive positive selection on Major Histocompatibility Complex (MHC) genes" submitted to PLOS Computational Biology. The dataset is packed in ZIP archive 'MHC_PosSel_dataset.zip' and contain the results of the simulation model.
DOI: 10.5281/zenodo.13297
title: A Join Of The Huber Et Al. (2014) Catalog Of Stellar Parameters And The Kepler Input Catalog

description: This a join of the Huber et al. (2014) and the Kepler Input Catalog
description: {"references": ["http://arxiv.org/abs/1312.0662", "http://arxiv.org/abs/1102.0342"]}
DOI: 10.5281/zenodo.13334
title: 1000 Backlinks To Baidu.Com (16-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to baidu.com. The retrieval process was completed on 16-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.13335
title: 1000 Backlinks To Sina.Com.Cn (16-Dec-2014) -- Varocarbas.Com

description: High quality backlinks to sina.com.cn. The retrieval process was completed on 16-Dec-2014.

 

Note that the bots in varocarbas.com (Project 1 - Stage 2) are collecting a maximum of 1000 high-quality backlinks (e.g., "site.com/backlink" rather than "site.com/this/that/backlink") for each domain.
DOI: 10.5281/zenodo.33941
title: Dataset Supporting Publication Entitled: Kiaa0556 Is A Novel Ciliary Basal Body Component Mutated In Joubert Syndrome

description: Supporting dataset for a publication in Genome Biology, entitled

"KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome" .
DOI: 10.5281/zenodo.34124
title: Data For "Local Strain Rate Sensitivity Of Single Α Phase Within A Dual-Phase Ti Alloy"

description: Data for "Local strain rate sensitivity of single a phase within a dual-phase Ti alloy"

Tea-Sung Jun, Zhen Zhang, Giorgio Sernicola, Fionn P.E. Dunne and T. Benjamin Britton<br>
Department of Materials, Imperial College London, Prince consort Road, London, SW7 2AZ, UK

--

This micropillar compression data folder contains 6 subfolders:<br>
(1) Micropillar compression videos<br>
(2) Data for Figure 6<br>
(3) Data for Figure 7<br>
(4) Data for Figure 10<br>
(5) Data for Figure 11<br>
(6) Data for Figure 12

--

In the subfolder (1), each file name indicates 'Pillar name (Slip system, Strain rate)', e.g. Pillar 1 (Basal, 0.01). <br>
For the subfolders (2) ~ (6), readers can plot the graphs either using Excel, OriginPro or other software. <br>
Note that we used the OriginPro to generate all the graphs in this article.

--

If readers need further information, please feel free to contact: t.jun@imperial.ac.uk or terryjun83@gmail.com (Tea-Sung (Terry) Jun)
DOI: 10.5281/zenodo.34148
title: Dhdp – Reviewers – Dh-2012

description: Director of OpenEdition
description: Draft published here : http://bn.hypotheses.org/11138
DOI: 10.5281/zenodo.13375
title: Marcs (2011) Model Atmospheres

description: This is a Python-pickled version of the MARCS 2011 model atmospheres.
DOI: 10.5281/zenodo.34128
title: Simulated Data For Testing Cell Type Adjustment Methods

description: ***NOTE: An updated version of this dataset is available at https://zenodo.org/record/46746#.VtW7MmSAOko

Different simulation scenarios on which to test cell type adjustment methods for epigenome-wide association studies.  Each .RData file contains a matrix of methylation beta-values from a simulated blood cell mixture "sim_beta", a list of simulated differentially methylated positions "dmr", and a phenotype "disease_status".
DOI: 10.5281/zenodo.34158
title: Data For: Possible Synergistic Effects Of Thymol And Nicotine Against Crithidia Bombi Parasitism In Bumble Bees

description: Data and R scripts for analysis of nicotine-thymol synergy experiment and thymol dose experiment evaluating effects of nectar secondary metabolite treatments on <em>Crithidia bombi </em>parasite load and mortality in the bumble bee <em>Bombus impatiens.</em>
DOI: 10.5281/zenodo.34160
title: Itag2.3 Tomato Genome Annotation, Rdf Graph

description: Annotation of the tomato genome, ITAG2.3 (ftp://ftp.sgn.cornell.edu/genomes/Solanum_lycopersicum/annotation/ITAG2.3_release/). GFF file's were converted into a RDF graph.
DOI: 10.5281/zenodo.13392
title: Popc @ 310K, Model By Ulmschneider And Ulmschneider

description: Files required for a simulation of a POPC bilayer and the resulting trajectories. The POPC model is that by Ulmschneider and Ulmschneider [1]. The structure and topology files are downloaded from Lipidbook [2]. The files (xtc and mdp) with '_dc' suffix are simulated with dispersion correction applied to both energy and pressure whereas the files without this suffix do not use this correction.

This data is used in the project "Matching lipid force fields with NMR data", see: http://nmrlipids.blogspot.fi 

[1] J.P. Ulmschneider & M.B. Ulmschneider, United Atom Lipid Parameters for Combination with the Optimized Potentials for Liquid Simulations All-Atom Force Field, JCTC 2009, 5(7), 1803–1813

[2] http://lipidbook.bioch.ox.ac.uk/package/show/id/52.html
DOI: 10.5281/zenodo.13393
title: Popc @ 298K, Model By Kukol

description: Files required for a simulation of a POPC bilayer and the resulting trajectory. The POPC model is that by Andreas Kukol [1]. The structure and topology files are downloaded from Lipidbook [2].

This data is used in the project "Matching lipid force fields with NMR data", see: http://nmrlipids.blogspot.fi 

[1] A Kukol, Lipid Models for United-Atom Molecular Dynamics Simulations of Proteins,  <em>J Chem Theory Comput</em> <strong>5</strong> (2009), 615–626, doi: 10.1021/ct8003468

[2] http://lipidbook.bioch.ox.ac.uk/package/show/id/15.html
DOI: 10.5281/zenodo.34443
title: Fructose - Replicate 1

description: RNA-Seq raw data for <em>R. eutropha</em> grown on fructose, replicate 1
DOI: 10.5281/zenodo.34444
title: Fructose - Replicate 2

description: RNA-Seq raw data for R. eutropha grown on fructose, replicate 2
DOI: 10.5281/zenodo.34445
title: Fructose - Replicate 3

description: RNA-Seq raw data for <em>R. eutropha </em>grown on fructose, replicate 3
DOI: 10.5281/zenodo.34446
title: Lauric Acid - Replicate 1

description: RNA-Seq raw data for <em>R. eutropha </em>grown on lauric acid, replicate 1
DOI: 10.5281/zenodo.34447
title: Lauric Acid - Replicate 2

description: RNA-Seq raw data from <em>R. eutropha</em> grown on lauric acid, replicate 2
DOI: 10.5281/zenodo.34448
title: Lauric Acid - Replicate 3

description: RNA-Seq raw data for <em>R. eutropha</em> grown on lauric acid, replicate 3
DOI: 10.5281/zenodo.34491
title: Md Simulation Trajectory For Popc Bilayer With 140Mm Nacl (Orange, Gromacs 4.5.)

description: Equilibrated POPC lipid bilayer simulation ran with Gromacs 4.5, Orange, 60ns, T=298K, 72 POPC molecules, 2866 water molecules, 7 Na molecules, 7 Cl molecules. This data is used in the NMRLipids II project (nmrlipids.blospot.fi, https://github.com/NMRLipids/lipid_ionINTERACTION).

 

The Orange model is unpublished lipid model developed by Luca Monticelli et al. http://perso.ibcp.fr/luca.monticelli/research/index.html. Beta version of the model is used here, thus only trajectory is shared.
DOI: 10.5281/zenodo.50976
title: 454 Data For The Microbiome Of Bats In The Southwestern United States.

description: 454 fast qual and mapping files from MR. DNA for the paper Environmental and Geographic Factors Affecting the External Bacterial Diversity on Bats in the Southwestern United State.
DOI: 10.5281/zenodo.50997
title: Effect Of Large Firms On Country'S Entrepreneurial Potential

description: This include data on country level entrepreneurial activities and intentions from the Global Entrepreneurship Monitor merged with data from MSME Country Indicators from World Bank-International Finance Corporation.
DOI: 10.5281/zenodo.51049
title: Effects Of The Olc Following Ardsnet Ventilation In Patients With Early Ards

description: Background: Ventilation with low tidal volume (VT) is well recognized as a protective approach to patients with acute respiratory distress syndrome (ARDS), but the optimal level of positive end-expiratory pressure (PEEP) remains uncertain. This study aims to evaluate two protective ventilatory strategies sequentially applied in patients with early ARDS. Methods: In this prospective cohort study, fifteen patients were ventilated during 24h with positive end-expiratory pressure (PEEP) adjusted according to the ARDSnet low-PEEP table (ARDSnet-24h). During the next 24h, nine patients with PaO2/FIO2 ratio below 350 mmHg were ventilated with PEEP titrated according to the Open Lung Concept protocol (ARDSnet+OLC). In the other six patients, regardless of their PaO2/FIO2 ratio, the ARDSnet remained for a further 24 h (ARDSnet-48h). Ventilatory variables, arterial bloodgas and cytokine were obtained at baseline, 24 and 48h. Additionally, whole-lungcomputed tomography was acquired at 24 and 48h. Results: A sustained improvement in PaO2/FIO2 ratio (P=0.008) with a decrease in collapsed regions (P=0.008) was observed in the ARDSnet+OLC group compared with the ARDSnet-24h group. A reduction in IL-6 in plasma (P&lt;0.02) was observed throughout the protocol in the ARDSnet+OLC group. Compared with the ARDSnet-48h group, the ARDSnet+OLC presented smaller amounts of collapsed areas (P=0.018) without significant differences in hyperinflated regions and in driving and plateau pressures. Conclusions: In this set of patients with early ARDS, mechanical ventilation with an individually tailored PEEP sustained improved pulmonary function with better aeration, without significant increase in hyperinflated areas”