cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9980642.v1
title: Supplementary Material for: Efficacy and Safety of Two Fosfomycin Regimens as Antimicrobial Prophylaxis for Transrectal Prostate Biopsy: A Randomised Study

description: <b><i>Purpose:</i></b> Prostate biopsy is the gold standard for prostate cancer diagnosis; unfortunately, this procedure is not free from complications. Recent studies have shown an increase in antibiotic resistance. The aim of our prospective randomized study was to evaluate the efficacy and safety of a prostate biopsy prophylaxis protocol using 2 vs. 3 fosfomycin doses. <b><i>Methods:</i></b> Two hundred and ninety-seven patients undergoing transrectal systematic ultrasound (US)-guided (<i>n</i> = 277) or transrectal fusion prostate biopsy (<i>n</i> = 20) were prospectively evaluated and randomized by date of birth, to receive 2 (even years, group A) versus 3 doses of fosfomycin (odd years, group B), and prospectively evaluated. <b><i>Results:</i></b>Two hundred and ninety-seven patients were randomized to group A (<i>n</i> = 162) or group B (<i>n</i> = 135). The 2 groups were comparable with respect to age, comorbidity, PSA value, prostate volume, operative time and urine culture results. Out of 297 patients, 44 (14.8%) developed complications after the procedure; 2.7% (8/297) of patients developed fever &gt;38° requiring hospitalization (6 [3.7%] in group A and 2 [1.5%] in group B, <i>p</i> = 0.29). Patients who underwent fusion biopsy were more frequently readmitted in comparison with patients undergoing US-guided prostate biopsy (<i>p</i> = 0.000). <b><i>Conclusion:</i></b> The low fever and prostatitis rate suggest that fosfomycin prophylaxis is safe and efficient. There is no significant difference in clinical outcome between the 2 dosage regimens.
DOI: 10.6073/pasta/e8a7dcc1cff0cd5dcedfb3ccb047ddd8
title: Total nitrogen and total phosphorus concentrations from surface water samples collected by the Citizen-Led Environmental Observatory (CLEO) from multiple nearshore sites in Lake Lillinonah, Connecticut, USA, 2011-current

description: Included in this data package are water quality data from the Citizen-Led Environmental Observatory (CLEO), a volunteer water quality monitoring program run by Friends of the Lake (FOTL, friendsofthelake.org) and Fairfield University at Lake Lillinonah, Connecticut, USA. The program has been operational since 2008 (data available 2011-current). Trained volunteer monitors collect surface water samples from multiple nearshore sites twice a month from Memorial Day through Labor Day. These samples are analyzed for total nitrogen and total phosphorus concentrations. Water samples are also analyzed for levels of the toxin microcystin. Additionally, CLEO volunteers collect data on water temperature, Secchi disk depth, water color, presence of floating woody debris, recreation potential, trash, particle type and surface scum every 1-3 days during the same period. These additional data are available in EDI packages EDI567 (general water quality) and EDI569 (toxins).
DOI: 10.6084/m9.figshare.9980468
title: Mediterranean diet vegetable foods protect meat lipids from oxidation during <i>in vitro</i> gastro-intestinal digestion

description: Meat lipids oxidation during digestion gives rise to a post-prandial oxidative stress condition, which negatively affects human health. Mediterranean Diet vegetables contain high amount of phenolic compounds, which potentially may reduce the oxidative phenomena during digestion. <i>In vitro</i> co-digestion of turkey meat with a typical Mediterranean Diet salad containing tomato, onion, black olives, extra-virgin olive oil (EVOO) and basil, dose-dependently reduced lipid peroxidation. Onion and EVOO were more effective in limiting oxidation than the other foods, resulting in negligible concentrations of lipid hydroperoxides after digestion. Specific phenolic classes dominated the phenolic profile of the different foods, such as flavonols and anthocyanins in onion, phenolic acids in tomato and basil, and tyrosol-derivatives in black olives and EVOO. The correlation between lipid peroxidation inhibition, phenolic constituents and antioxidant properties was evaluated by principal component analysis (PCA). Flavonols and anthocyanin were the major contributors to the bioactive response of vegetable foods.
DOI: 10.6084/m9.figshare.9980471
title: Global pollinator database

description: The present dataset was compiled from the published literature on plant-pollinator interactions. It consists of <br>* a .csv file (database), documenting crop-pollinator interactions that have been reported in the literature for 80 crop species and 256 pollinator species (global coverage), along with trait values for both crops and pollinators. <br>* a second .csv file with metadata (description of the variables) <br>The compilation of the database is described in Boreux et al, in prep. A draft of this manuscript can be requested from alexandra.klein@nature.uni-freiburg.de<br>VB acknowledges funding for the assembly of the database by Bayer CropScience<br>
DOI: 10.6084/m9.figshare.9980468.v1
title: Mediterranean diet vegetable foods protect meat lipids from oxidation during <i>in vitro</i> gastro-intestinal digestion

description: Meat lipids oxidation during digestion gives rise to a post-prandial oxidative stress condition, which negatively affects human health. Mediterranean Diet vegetables contain high amount of phenolic compounds, which potentially may reduce the oxidative phenomena during digestion. <i>In vitro</i> co-digestion of turkey meat with a typical Mediterranean Diet salad containing tomato, onion, black olives, extra-virgin olive oil (EVOO) and basil, dose-dependently reduced lipid peroxidation. Onion and EVOO were more effective in limiting oxidation than the other foods, resulting in negligible concentrations of lipid hydroperoxides after digestion. Specific phenolic classes dominated the phenolic profile of the different foods, such as flavonols and anthocyanins in onion, phenolic acids in tomato and basil, and tyrosol-derivatives in black olives and EVOO. The correlation between lipid peroxidation inhibition, phenolic constituents and antioxidant properties was evaluated by principal component analysis (PCA). Flavonols and anthocyanin were the major contributors to the bioactive response of vegetable foods.
DOI: 10.6084/m9.figshare.9980441.v1
title: The annotation of uORFs in 216 multicellular eukaryotes

description: The annotation of uORFs in 216 multicellular eukaryotes.
DOI: 10.6084/m9.figshare.9980351
title: MOESM7 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 7: Table S5. Summary of statistical analysis of plasma cytokine data. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.9980351.v1
title: MOESM7 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 7: Table S5. Summary of statistical analysis of plasma cytokine data. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.9980336
title: MOESM6 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 6: Table S4. Summary of statistical analysis of CBC data. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.9980324
title: MOESM4 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 4: Table S3. Summary of statistical analysis of rectal temperature data. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9980336.v1
title: MOESM6 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 6: Table S4. Summary of statistical analysis of CBC data. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.9980324.v1
title: MOESM4 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 4: Table S3. Summary of statistical analysis of rectal temperature data. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.9980312
title: MOESM2 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 2: Table S2. Primers used to confirm inflammatory response in pigs stimulated with LPS by RT-qPCR. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.9980312.v1
title: MOESM2 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 2: Table S2. Primers used to confirm inflammatory response in pigs stimulated with LPS by RT-qPCR. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.9980306
title: MOESM1 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 1: Table S1. Metadata for RNA-seq samples. (XLSX 30 kb)
DOI: 10.6073/pasta/83129332eee59862b5b5fa80fda8ce57
title: Semi-quantitative microcystin concentration measured in surface water samples collected by the Citizen-Led Environmental Observatory (CLEO) from multiple nearshore sites in Lake Lillinonah, Connecticut, USA, 2015-2018

description: Included in this data package are cyanobacterial toxin data from the Citizen-Led Environmental Observatory (CLEO), a volunteer water quality monitoring program run by Friends of the Lake (FOTL, friendsofthelake.org) and Fairfield University at Lake Lillinonah, Connecticut, USA. The program has been operational since 2008 (toxin data available form 2015-2018). Trained volunteer monitors collect routine surface water samples from multiple nearshore sites twice a month from Memorial Day through Labor Day. In addition, spot samples are taken whenever a significant algae bloom is present at the collection site. These samples are analyzed for microcystin concentrations. Routine water samples are also analyzed for levels of the total nitrogen and phosphorus concentrations. Additionally, CLEO volunteers collect data on water temperature, Secchi disk depth, water color, presence of floating woody debris, recreation potential, trash, particle type and surface scum every 1-3 days during the same period. These data are available in EDI packages EDI567 (general water quality) and EDI568 (nutrients).
DOI: 10.6084/m9.figshare.9980306.v1
title: MOESM1 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 1: Table S1. Metadata for RNA-seq samples. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.9980285
title: MOESM1 of Genetic diversity of trypanosome species in tsetse flies (Glossina spp.) in Nigeria

description: Additional file 1: Table S1. Overview of all PCR analysis including all sequences generated from the tsetse samples (gut and proboscis). Displayed are the date and site of collection, the unique fly ID (fly #), sex and morphological species. Flies were dissected in the field in order of appearance. If applicable, molecular Glossina species identification is indicated separately. Sheet one (gut) includes all data on molecular analysis of trypanosomes in tsetse gut samples, including all obtained sequences and all screenings with specific primers. Sheet two (proboscis) includes all data on molecular analysis of trypanosomes in tsetse proboscis samples.
DOI: 10.6084/m9.figshare.9980285.v1
title: MOESM1 of Genetic diversity of trypanosome species in tsetse flies (Glossina spp.) in Nigeria

description: Additional file 1: Table S1. Overview of all PCR analysis including all sequences generated from the tsetse samples (gut and proboscis). Displayed are the date and site of collection, the unique fly ID (fly #), sex and morphological species. Flies were dissected in the field in order of appearance. If applicable, molecular Glossina species identification is indicated separately. Sheet one (gut) includes all data on molecular analysis of trypanosomes in tsetse gut samples, including all obtained sequences and all screenings with specific primers. Sheet two (proboscis) includes all data on molecular analysis of trypanosomes in tsetse proboscis samples.
DOI: 10.6084/m9.figshare.9980279
title: MOESM15 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 15: Table S8. GO terms overrepresented among DEGs post LPS injection compared to baseline. (XLSX 412 kb)
DOI: 10.6084/m9.figshare.9980279.v1
title: MOESM15 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 15: Table S8. GO terms overrepresented among DEGs post LPS injection compared to baseline. (XLSX 412 kb)
DOI: 10.6084/m9.figshare.9980255
title: MOESM12 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 12: Table S7. Within-line DEGs post LPS injection compared to baseline. (XLSX 8237 kb)
DOI: 10.6084/m9.figshare.9980246
title: MOESM5 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 5: Table S3. Assignment of the Bayesian clustering analysis of Ae. albopictus populations. Abbreviations: China: GZ, Guangzhou; XM, Xiamen; JS, Jiangsu; Taiwan: TW, Xinzhu; Japan: JP, Nagazaki; Singapore: SG, Helios Block; Italy: IT, Trentino; USA: LA01, California; LA11, California; NJ, New Jersey; TX, Texas; HW, Hawaiiâ are samples from Zhong et al. [31]; Lao PDR: BK, Borikhamxay; BO, Bokeo; CH, Champasak; KM, Khammuane; LN, Luangnamtha; LP, Luang Prabang; VC, Vientiane Capital; XB, Xayabouly; Thailand: TH, Thailand. #Samples available in Genbank from Zhong et al. [31]. The coefficient values above 0.25 are highlighted in bold.
DOI: 10.6084/m9.figshare.9980249
title: MOESM11 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 11: Table S6. Between-line DEGs at each time point. The identifiers of the 14 genes persistently differentially expressed between the two lines are marked with red color. (XLSX 5264 kb)
DOI: 10.6084/m9.figshare.9980255.v1
title: MOESM12 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 12: Table S7. Within-line DEGs post LPS injection compared to baseline. (XLSX 8237 kb)
DOI: 10.6084/m9.figshare.9980240
title: MOESM4 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 4: Figure S2. Mismatch distributions showing the frequencies of pairwise differences of Ae. albopictus in Lao PDR.
DOI: 10.6084/m9.figshare.9980246.v1
title: MOESM5 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 5: Table S3. Assignment of the Bayesian clustering analysis of Ae. albopictus populations. Abbreviations: China: GZ, Guangzhou; XM, Xiamen; JS, Jiangsu; Taiwan: TW, Xinzhu; Japan: JP, Nagazaki; Singapore: SG, Helios Block; Italy: IT, Trentino; USA: LA01, California; LA11, California; NJ, New Jersey; TX, Texas; HW, Hawaiiâ are samples from Zhong et al. [31]; Lao PDR: BK, Borikhamxay; BO, Bokeo; CH, Champasak; KM, Khammuane; LN, Luangnamtha; LP, Luang Prabang; VC, Vientiane Capital; XB, Xayabouly; Thailand: TH, Thailand. #Samples available in Genbank from Zhong et al. [31]. The coefficient values above 0.25 are highlighted in bold.
DOI: 10.6084/m9.figshare.9980249.v1
title: MOESM11 of Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

description: Additional file 11: Table S6. Between-line DEGs at each time point. The identifiers of the 14 genes persistently differentially expressed between the two lines are marked with red color. (XLSX 5264 kb)
DOI: 10.6084/m9.figshare.9980231
title: MOESM2 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 2: Figure S1. Fixation indices obtained by SAMOVA for the best-clustering option at each pre-defined values of K. Abbreviations: FCT, variation among groups of populations; FSC, variation among populations within groups; FST, variation among population among groups.
DOI: 10.6084/m9.figshare.9980237
title: MOESM3 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 3: Table S2. Geographical distances (in km) among Ae. albopictus from Lao PDR. Abbreviations: BK, Borikhamxay; BO, Bokeo; CH, Champasak; KM, Khammuane; LN, Luangnamtha; LP, Luang Prabang; VC, Vientiane Capital; XB, Xayabouly.
DOI: 10.6084/m9.figshare.9980240.v1
title: MOESM4 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 4: Figure S2. Mismatch distributions showing the frequencies of pairwise differences of Ae. albopictus in Lao PDR.
DOI: 10.6084/m9.figshare.9980237.v1
title: MOESM3 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 3: Table S2. Geographical distances (in km) among Ae. albopictus from Lao PDR. Abbreviations: BK, Borikhamxay; BO, Bokeo; CH, Champasak; KM, Khammuane; LN, Luangnamtha; LP, Luang Prabang; VC, Vientiane Capital; XB, Xayabouly.
DOI: 10.6084/m9.figshare.9980231.v1
title: MOESM2 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao Peopleâ s Democratic Republic

description: Additional file 2: Figure S1. Fixation indices obtained by SAMOVA for the best-clustering option at each pre-defined values of K. Abbreviations: FCT, variation among groups of populations; FSC, variation among populations within groups; FST, variation among population among groups.
DOI: 10.6084/m9.figshare.9980225
title: MOESM1 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao People’s Democratic Republic

description: Additional file 1: Table S1. Pairwise differentiation, FST, among populations of Ae. albopictus. Abbreviations: China: GZ, Guangzhou; XM, Xiamen; JS, Jiangsu; Taiwan: TW, Xinzhu; Japan: JP, Nagazaki; Singapore: SG, Helios Block; Italy: IT, Trentino; USA: LA01, California; LA11, California; NJ, New Jersey; TX, Texas; HW, Hawaii; Lao PDR: BK, Borikhamxay; BO, Bokeo; CH, Champasak; KM, Khammuane; LN, Luangnamtha; LP, Luang Prabang; VC, Vientiane Capital; XB, Xayabouly; Thailand: TH, Thailand. #Samples available in GenBank from Zhong et al. [31]. *Significant values after Bonferroni correction (P ˂ 0.05).
DOI: 10.6084/m9.figshare.9980207
title: MOESM9 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 9. Alignment of Pacbio reads used to define the genomic sequence of the RJF PET100gene.
DOI: 10.6084/m9.figshare.9980225.v1
title: MOESM1 of Population genetics of Aedes albopictus (Diptera: Culicidae) in its native range in Lao People’s Democratic Republic

description: Additional file 1: Table S1. Pairwise differentiation, FST, among populations of Ae. albopictus. Abbreviations: China: GZ, Guangzhou; XM, Xiamen; JS, Jiangsu; Taiwan: TW, Xinzhu; Japan: JP, Nagazaki; Singapore: SG, Helios Block; Italy: IT, Trentino; USA: LA01, California; LA11, California; NJ, New Jersey; TX, Texas; HW, Hawaii; Lao PDR: BK, Borikhamxay; BO, Bokeo; CH, Champasak; KM, Khammuane; LN, Luangnamtha; LP, Luang Prabang; VC, Vientiane Capital; XB, Xayabouly; Thailand: TH, Thailand. #Samples available in GenBank from Zhong et al. [31]. *Significant values after Bonferroni correction (P ˂ 0.05).
DOI: 10.6084/m9.figshare.9980198
title: MOESM8 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 8. Alignment of Pacbio reads used to define the genomic sequence of the RJF TNF gene.
DOI: 10.6084/m9.figshare.9980207.v1
title: MOESM9 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 9. Alignment of Pacbio reads used to define the genomic sequence of the RJF PET100gene.
DOI: 10.6084/m9.figshare.9980198.v1
title: MOESM8 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 8. Alignment of Pacbio reads used to define the genomic sequence of the RJF TNF gene.
DOI: 10.6084/m9.figshare.9980189
title: MOESM7 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 7. Alignment of Pacbio reads used to define the genomic sequence of the RJF MRPL52gene.
DOI: 10.6084/m9.figshare.9980189.v1
title: MOESM7 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 7. Alignment of Pacbio reads used to define the genomic sequence of the RJF MRPL52gene.
DOI: 10.6084/m9.figshare.9980180
title: MOESM6 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 6. Alignment of Pacbio reads used to define the genomic sequence of the RJF TNFαgene.
DOI: 10.6084/m9.figshare.9980168
title: MOESM4 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 4. Alignment of Illumina and Pacbio reads used to define the genomic sequence of the RJF leptin gene.
DOI: 10.6084/m9.figshare.9980180.v1
title: MOESM6 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 6. Alignment of Pacbio reads used to define the genomic sequence of the RJF TNFαgene.
DOI: 10.6084/m9.figshare.9980159
title: MOESM3 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 3. cDNA models described in [5, 20].
DOI: 10.6084/m9.figshare.9980168.v1
title: MOESM4 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 4. Alignment of Illumina and Pacbio reads used to define the genomic sequence of the RJF leptin gene.
DOI: 10.6084/m9.figshare.9980159.v1
title: MOESM3 of Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies

description: Additional file 3. cDNA models described in [5, 20].
DOI: 10.6084/m9.figshare.9980129
title: MOESM3 of Birth, expansion, and death of VCY-containing palindromes on the human Y chromosome

description: Additional file 3: Table S1. PCR primers used for amplification of fiber-FISH probes. Table S2. PCR primers for breakpoints identification. Table S3. Sanger sequencing primers for NA18953 breakpoint PCR product. Table S4. Sanger sequencing primers for HG04131 breakpoint PCR product. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.9980129.v1
title: MOESM3 of Birth, expansion, and death of VCY-containing palindromes on the human Y chromosome

description: Additional file 3: Table S1. PCR primers used for amplification of fiber-FISH probes. Table S2. PCR primers for breakpoints identification. Table S3. Sanger sequencing primers for NA18953 breakpoint PCR product. Table S4. Sanger sequencing primers for HG04131 breakpoint PCR product. (XLSX 14 kb)