cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7590613
title: Data products of Platz, Knollmüller, Arras et al., 2022 - Preliminary Version, Rev 1

description: Preliminary data product release for the ArXiV version of the above mentioned paper. The final version is expected to be published at the CDS. If already available, please use it instead of this release. <strong>General Description</strong><br> This data collection contains the numerical results of the Gamma-ray sky reconstructions discussed in the first revision of the above-mentioned paper. The results of each reconstruction are stored in a separate ZIP archive. For each reconstruction and sky component, we provide the following data products: the reconstructed posterior samples of I^c_ij (see definition in paper) posterior sample means and sample standard deviations These are contained in HDF5 files named after the components, following the naming conventions in the paper. Each HDF5 file contains the data groups 'samples' and 'stats', with the former containing the posterior samples and the latter containing the posterior sample mean and standard deviation. <strong>Pixelation in the spatial domain</strong><br> The sky sphere is pixelated following the HEALPix 'RING' scheme with an Nside of 128. <strong>Pixelation in the spectral (energy) domain</strong><br> The energy dimension is pixelated as a regular grid on logarithmic energy scale. The energy bin boundaries are the same for both reconstructions and are stored in the file 'energy_bins.hdf5'. <strong>A note on summary statistics</strong><br> The posterior mean and standard deviations contained in the HDF5 files are calculated directly from the posterior samples as given. However, for many analyses it is more appropriate to use the mean and standard deviation on logarithmic scale.
DOI: 10.5281/zenodo.7590737
title: Data products of Platz, Knollmüller, Arras et al., 2022 - Preliminary Version, Rev 1.1

description: Preliminary data product release for the ArXiV version of the above mentioned paper. The final version is expected to be published at the CDS. If already available, please use it instead of this release. <strong>General Description</strong><br> This data collection contains the numerical results of the Gamma-ray sky reconstructions discussed in the first revision of the above-mentioned paper. The results of each reconstruction are stored in a separate ZIP archive. For each reconstruction and sky component, we provide the following data products: the reconstructed posterior samples of I^c_ij (see definition in paper) posterior sample means and sample standard deviations These are contained in HDF5 files named after the components, following the naming conventions in the paper. Each HDF5 file contains the data groups 'samples' and 'stats', with the former containing the posterior samples and the latter containing the posterior sample mean and standard deviation. <strong>Pixelation in the spatial domain</strong><br> The sky sphere is pixelated following the HEALPix 'RING' scheme with an Nside of 128. <strong>Pixelation in the spectral (energy) domain</strong><br> The energy dimension is pixelated as a regular grid on logarithmic energy scale. The energy bin boundaries are the same for both reconstructions and are stored in the file 'energy_bins.hdf5'. <strong>A note on summary statistics</strong><br> The posterior mean and standard deviations contained in the HDF5 files are calculated directly from the posterior samples as given. However, for many analyses it is more appropriate to use the mean and standard deviation on logarithmic scale.
DOI: 10.5281/zenodo.6471430
title: Data products of Platz, Knollmüller, Arras et al., 2022 - Preliminary Version

description: Preliminary data product release for the ArXiV version of the above mentioned paper. The final version is expected to be published at the CDS. If already available, please use it instead of this release.
DOI: 10.5281/zenodo.10281018
title: Predation of mesopelagic fish on tuna eggs and larvae: fitness benefits of synchronizing spawning with the moon

description: This repository contains all data and R code used in the research article "Model of mesopelagic fish predation on eggs and larvae shows benefits of tuna spawning under full moon" - https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.12465
Data and code are originally structured in folders and can be found in GitHub - https://github.com/dottmann/moon_light
DOI: 10.5281/zenodo.10281019
title: Predation of mesopelagic fish on tuna eggs and larvae: fitness benefits of synchronizing spawning with the moon

description: This repository contains all data and R code used in the research article "Model of mesopelagic fish predation on eggs and larvae shows benefits of tuna spawning under full moon" - https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.12465
Data and code are originally structured in folders and can be found in GitHub - https://github.com/dottmann/moon_light
DOI: 10.5281/zenodo.10013056
title: Dataset related to article "Genomic instability analysis in DNA from Papanicolaou test provides proof-of-principle early diagnosis of high-grade serous ovarian cancer"

description: This record contains data related to the article "Genomic instability analysis in DNA from Papanicolaou test provides proof of principle early diagnosis of high-grade serous ovarian cancer".
Abstract
Late diagnosis and the lack of screening methods for early detection define high-grade serous ovarian cancer (HGSOC) as the gynecological malignancy with the highest mortality rate. In the work presented here, we investigated a retrospective and multicentric cohort of 250 archival Papanicolaou (Pap) test smears collected during routine gynecological screening. Samples were taken at different time points (from 1 month to 13.5 years before diagnosis) from 113 presymptomatic women who were subsequently diagnosed with HGSOC (pre-HGSOC) and from 77 healthy women. Genome instability was detected through low-pass whole-genome sequencing of DNA derived from Pap test samples in terms of copy number profile abnormality (CPA). CPA values of DNA extracted from Pap test samples from pre-HGSOC women were substantially higher than those in samples from healthy women. Consistently with the longitudinal analysis of clonal pathogenic TP53 mutations, this assay could detect HGSOC presence up to 9 years before diagnosis. This finding confirms the continual shedding of tumor cells from fimbriae toward the endocervical canal, suggesting a new path for the early diagnosis of HGSOC. We integrated the CPA score into the EVA (early ovarian cancer) test, the sensitivity of which was 75% (95% CI, 64.97 to 85.79), the specificity 96% (95% CI, 88.35 to 100.00), and the accuracy 81%. This proof-of-principle study indicates that the early diagnosis of HGSOC is feasible through the analysis of genomic alterations in DNA from endocervical smears.
DOI: 10.5281/zenodo.10013057
title: Dataset related to article "Genomic instability analysis in DNA from Papanicolaou test provides proof-of-principle early diagnosis of high-grade serous ovarian cancer"

description: This record contains data related to the article "Genomic instability analysis in DNA from Papanicolaou test provides proof of principle early diagnosis of high-grade serous ovarian cancer".
Abstract
Late diagnosis and the lack of screening methods for early detection define high-grade serous ovarian cancer (HGSOC) as the gynecological malignancy with the highest mortality rate. In the work presented here, we investigated a retrospective and multicentric cohort of 250 archival Papanicolaou (Pap) test smears collected during routine gynecological screening. Samples were taken at different time points (from 1 month to 13.5 years before diagnosis) from 113 presymptomatic women who were subsequently diagnosed with HGSOC (pre-HGSOC) and from 77 healthy women. Genome instability was detected through low-pass whole-genome sequencing of DNA derived from Pap test samples in terms of copy number profile abnormality (CPA). CPA values of DNA extracted from Pap test samples from pre-HGSOC women were substantially higher than those in samples from healthy women. Consistently with the longitudinal analysis of clonal pathogenic TP53 mutations, this assay could detect HGSOC presence up to 9 years before diagnosis. This finding confirms the continual shedding of tumor cells from fimbriae toward the endocervical canal, suggesting a new path for the early diagnosis of HGSOC. We integrated the CPA score into the EVA (early ovarian cancer) test, the sensitivity of which was 75% (95% CI, 64.97 to 85.79), the specificity 96% (95% CI, 88.35 to 100.00), and the accuracy 81%. This proof-of-principle study indicates that the early diagnosis of HGSOC is feasible through the analysis of genomic alterations in DNA from endocervical smears.
DOI: 10.6084/m9.figshare.24474760
title: .txt and .csv files containing extracted data from video files

description: approach behaviour for female mice listening to male vocalisations (natural or experimentally manipulated).
DOI: 10.5281/zenodo.10280996
title: Water company RasterModelGrids
DOI: 10.5281/zenodo.10280997
title: Water company RasterModelGrids
DOI: 10.34777/ghta-f269
title: Spoken Gigaword

description: This is the synthetic Spoken Gigaword dataset, which are parts of the dataset created for the studies on interpreter-aided spoken language understanding (SLU).
DOI: 10.5281/zenodo.8298874
title: Localized f-electron magnetism in the semimetal Ce3Bi4Au3

description: Dataset for the simulation data included in the publication:
  "Localized f-electron magnetism in the semimetal Ce3Bi4Au3"
  M. O. Ajeesh, S. K. Kushwaha, S. M. Thomas, J. D. Thompson, M. K. Chan, N. Harrison, J. M. Tomczak, and P. F. S. Rosa

This repository contains the in- and ouput data of the numerical simulations created by J. M. Tomczak.
When using the data included here, please cite the above paper and this zenodo archive.


FIGURES


The figures 7, 9, and 10 of the above manuscript were created with the following gnuplot scripts:


./WIEN2k/plot_fig_9
./DMFT/plot_fig_7a
./DMFT/plot_fig_7b
./DMFT/plot_fig_7c
./DMFT/plot_fig_10a
./DMFT/plot_fig_10b


some gnuplot color palettes were taken from https://github.com/Gnuplotting/gnuplot-palettes
Beware, some of the data files and subdirectories might need to be un-zipped before plotting is possible.



DATA


Density functional theory (used code: [1])


  ./WIEN2k/Ce3Bi4Au3
  ./WIEN2k/La3Bi4Au3


The directories contain the internally relaxed structures material.struct, the converged potentials and a band-structure files materials.spaghetti_ene


Dynamical mean-field theory (used code: [2])


  ./DMFT/Ce3Bi4Au3/betaXXX


where XXX=40,100,200 are the used inverse temperatures beta=1/(kBT)
Analytically continued self-energy (used code: [2])
  ./DMFT/Ce3Bi4Au3/betaXXX/ancont


momentum-resolved spectra
   ./DMFT/Ce3Bi4Au3/beta200/akw


Linear response transport (used code: [3])


  ./DMFT/Ce3Bi4Au3/betaXXX/TRANSPORT/NkYxYxY/GimpZZmeV


where Y=20,30,40,50 are the number of k-points in each direction and ZZ=10,20,30 is the "impurity" scattering rate Gamma_{imp} in meV. 


[1] Wien2k
@article{wien2k2020,
  author = {Blaha,Peter  and Schwarz,Karlheinz  and Tran,Fabien  and Laskowski,Robert  and Madsen,Georg K. H.  and Marks,Laurence D. },
  title = {WIEN2k: An {APW}+lo program for calculating the properties of solids},
  journal = {The Journal of Chemical Physics},
  volume = {152},
  number = {7},
  pages = {074101},
  year = {2020},
  doi = {10.1063/1.5143061}
}


[2] DFT+DMFT of Haule et al
@Article{PhysRevB.81.195107,
  title = {Dynamical mean-field theory within the full-potential methods: Electronic structure of  {CeIrIn$_5$}, {CeCoIn$_5$}, and {CeRhIn$_5$}},
  author = {Haule, Kristjan  and Yee, Chuck-Hou  and Kim, Kyoo },
  journal = {Phys. Rev. B},
  volume = {81},
  number = {19},
  pages = {195107},
  year = {2010},
  month = {May},
  doi = {10.1103/PhysRevB.81.195107},
  publisher = {American Physical Society}
}


[3] Linear Response Transport
@article{jmt_fesi,
  author = {Tomczak, Jan M. and Haule, Kristjan and Kotliar, Gabriel}, 
  title = {Signatures of electronic correlations in iron silicide}, 
  volume = {109}, 
  number = {9}, 
  pages = {3243-3246}, 
  year = {2012}, 
  doi = {10.1073/pnas.1118371109}, 
  URL = {http://www.pnas.org/content/109/9/3243.abstract}, 
  journal = pnas,
  note={preprint arXiv:1109.6561}
}
DOI: 10.5281/zenodo.8298875
title: Localized f-electron magnetism in the semimetal Ce3Bi4Au3

description: Dataset for the simulation data included in the publication:
  "Localized f-electron magnetism in the semimetal Ce3Bi4Au3"
  M. O. Ajeesh, S. K. Kushwaha, S. M. Thomas, J. D. Thompson, M. K. Chan, N. Harrison, J. M. Tomczak, and P. F. S. Rosa

This repository contains the in- and ouput data of the numerical simulations created by J. M. Tomczak.
When using the data included here, please cite the above paper and this zenodo archive.


FIGURES


The figures 7, 9, and 10 of the above manuscript were created with the following gnuplot scripts:


./WIEN2k/plot_fig_9
./DMFT/plot_fig_7a
./DMFT/plot_fig_7b
./DMFT/plot_fig_7c
./DMFT/plot_fig_10a
./DMFT/plot_fig_10b


some gnuplot color palettes were taken from https://github.com/Gnuplotting/gnuplot-palettes
Beware, some of the data files and subdirectories might need to be un-zipped before plotting is possible.



DATA


Density functional theory (used code: [1])


  ./WIEN2k/Ce3Bi4Au3
  ./WIEN2k/La3Bi4Au3


The directories contain the internally relaxed structures material.struct, the converged potentials and a band-structure files materials.spaghetti_ene


Dynamical mean-field theory (used code: [2])


  ./DMFT/Ce3Bi4Au3/betaXXX


where XXX=40,100,200 are the used inverse temperatures beta=1/(kBT)
Analytically continued self-energy (used code: [2])
  ./DMFT/Ce3Bi4Au3/betaXXX/ancont


momentum-resolved spectra
   ./DMFT/Ce3Bi4Au3/beta200/akw


Linear response transport (used code: [3])


  ./DMFT/Ce3Bi4Au3/betaXXX/TRANSPORT/NkYxYxY/GimpZZmeV


where Y=20,30,40,50 are the number of k-points in each direction and ZZ=10,20,30 is the "impurity" scattering rate Gamma_{imp} in meV. 


[1] Wien2k
@article{wien2k2020,
  author = {Blaha,Peter  and Schwarz,Karlheinz  and Tran,Fabien  and Laskowski,Robert  and Madsen,Georg K. H.  and Marks,Laurence D. },
  title = {WIEN2k: An {APW}+lo program for calculating the properties of solids},
  journal = {The Journal of Chemical Physics},
  volume = {152},
  number = {7},
  pages = {074101},
  year = {2020},
  doi = {10.1063/1.5143061}
}


[2] DFT+DMFT of Haule et al
@Article{PhysRevB.81.195107,
  title = {Dynamical mean-field theory within the full-potential methods: Electronic structure of  {CeIrIn$_5$}, {CeCoIn$_5$}, and {CeRhIn$_5$}},
  author = {Haule, Kristjan  and Yee, Chuck-Hou  and Kim, Kyoo },
  journal = {Phys. Rev. B},
  volume = {81},
  number = {19},
  pages = {195107},
  year = {2010},
  month = {May},
  doi = {10.1103/PhysRevB.81.195107},
  publisher = {American Physical Society}
}


[3] Linear Response Transport
@article{jmt_fesi,
  author = {Tomczak, Jan M. and Haule, Kristjan and Kotliar, Gabriel}, 
  title = {Signatures of electronic correlations in iron silicide}, 
  volume = {109}, 
  number = {9}, 
  pages = {3243-3246}, 
  year = {2012}, 
  doi = {10.1073/pnas.1118371109}, 
  URL = {http://www.pnas.org/content/109/9/3243.abstract}, 
  journal = pnas,
  note={preprint arXiv:1109.6561}
}
DOI: 10.4121/60767525-12ff-4c7d-8bc4-25722e400689
title: Netlogo, an agent-based model for evaluating policies to promote wood-based circular building practices within the Amsterdam built environment.

description: An Agent-Based Model (ABM) accompanied by an input file has been developed to assess policies promoting circular wood-based construction in Amsterdam's built environment. This model is primarily designed to investigate various policy instruments that encourage the use of wood in construction within Amsterdam, with a special focus on their effects on enhancing circularity. The model was created using NetLogo 6.3.0. The accompanying table file includes a selected group of utility buildings, detailing their floor area, year of construction, and functions.
DOI: 10.4121/60767525-12ff-4c7d-8bc4-25722e400689.v1
title: Netlogo, an agent-based model for evaluating policies to promote wood-based circular building practices within the Amsterdam built environment.

description: An Agent-Based Model (ABM) accompanied by an input file has been developed to assess policies promoting circular wood-based construction in Amsterdam's built environment. This model is primarily designed to investigate various policy instruments that encourage the use of wood in construction within Amsterdam, with a special focus on their effects on enhancing circularity. The model was created using NetLogo 6.3.0. The accompanying table file includes a selected group of utility buildings, detailing their floor area, year of construction, and functions.
DOI: 10.25625/61ecdl/cdzq3g
title: Jakob_Hördt_Masterarbeit.pdf

description: :unav
DOI: 10.25625/61ecdl
title: An HPC FaaS Runtime based on HPX and Modern Lightweight Isolation

description: Function as a Service (FaaS) has become a prominent cloud computing paradigm during recent years, where developers hand small functions to cloud providers for them to automatically invoke on triggers, such as HTTP requests complete with auto scaling and typically monitoring and logging, instead of renting (virtual) machines and caring for scaling and other amenities themselves. Scientific computing is still dominated by the classic batch scheduling model although FaaS can provide a better user experience in many usecases, for example when developers want to expose HPC services to external users. There is a multitude of open source FaaS runtimes available to self-host, but most of them are not focused on use in HPC environments and therefore might make suboptimal use of the available hardware, are difficult to install due to complex dependencies or permissions, or make it difficult to integrate special HPC hardware or software libraries. FaaS runtimes always require load balancing and delegating function invocations to distributed machines, which the HPX library provides, as it strives to enable local and distributed concurrency and parallelism with fine grained tasks. This work explores utilizing these abilities of HPX as the basis for an HPC FaaS runtime. Most FaaS runtimes require isolation to protect their tenants and infrastructure from malicious actors and accidental faults in developer code. WebAssembly is an assembly-like language, compilation target and sandbox to execute untrusted code in the browser with near-native performance, which is seeing increased use in FaaS applications. A novel FaaS runtime design based on HPX and WASM is presented and its implementation performance and usability was evaluated using benchmarks of the whole system, as well as of individual components. We demonstrate how our approach achieves 10% higher throughput and a 16% reduced average latency compared to an HTTP-based implementation in certain settings. Furthermore, the prospect of streaming, as opposed to bulk transfer of function inputs and outputs is evaluated and discussed.
DOI: 10.17632/mvkmykn2j6.1
title: A comparative study on the physicochemical characteristics of keratin extracted from three commercial bird feathers and its antibacterial activity

description: The study brings out the physicochemical difference of the extracted keratin from three bird feathers. The FTIR and XRD data of the three keratin samples obtained from different bird feathers were deposited for future use and interpretation. The Zone of inhibition of the different keratin samples was attached.
DOI: 10.17632/fff64w3rzn.1
title: Dataset of NaTech events triggered by lightning within the Process Industry

description: This study delves into the impactful realm of lightning strikes, a meteorological phenomenon that poses substantial risks to the process industry by potentially triggering technological disruptions. Despite constituting merely 13% of NaTech (Natural-Technological) events, lightning events hold significant consequences within the process industry. To comprehend this, a meticulous analysis of past lightning-triggered incidents was conducted, utilizing open-source industrial-accident databases to assemble a dataset comprising 689 records. The research not only builds upon prior studies concerning NaTech events triggered by lightning but also updates the information, encompassing events until the close of 2022. A systematic classification system was introduced, in adherence to NaTech risk field recent studies, enhancing the accuracy of information. Concurrently, adjustments were made in compliance with international regulations governing lightning strikes. The study involved an event tree analysis, incorporating recent conceptual updates regarding the propagation path of NaTech events. Bayesian structures were employed, revealing interdependencies and vulnerabilities among functional variables. Quantitative analysis disclosed that over 80% of these events involved Incidents or Loss of Containment, transpiring mostly during regular plant operations. Alarmingly, records indicated a lack of information regarding safety barriers, emphasizing the need for heightened focus on this crucial aspect. Seasonal patterns emerged, with 83.3% of incidents transpiring during spring and summer, primarily in the Chemical and Petrochemical sector. Storage equipment followed by electrical equipment and electrical devices were the most vulnerable components, constituting 40% and 21% of events respectively. Fire scenarios dominated at 56%, involving substances classified as physical hazards in approximately 70% of cases. Event tree analysis revealed the damage source in 65% of records, with potential categorization as major accidents, according to Seveso Directive criteria. Implementing Bayesian networks provided a robust framework, elucidating conditional probabilities governing critical dependencies associated with damage, including source, state, and final scenario. Insights from past incidents bolster industrial vulnerability awareness against lightning strikes. These insights are part of an article to be submitted to the Journal of Process Safety and Environmental Protection, entitled "NaTech triggered by lightning: Learning from past events within the process industry".