cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3642818_d4
title: Additional file 2: Table S2. of Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection

description: Aberrantly expressed lncRNAs and mRNAs in GES-1 cells infected by H.pylori. (XLSX 621Â kb)
DOI: 10.6084/m9.figshare.c.3642818_d2
title: Additional file 1: Table S1. of Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection

description: Clinical specimens information. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3642818_d3
title: Additional file 3: Table S3. of Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection

description: GO analysis of aberrantly expressed mRNAs. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3642746_d3
title: Additional file 3: of The complexity of human infected AIV H5N6 isolated from China

description: 2c, 3c, 7c, and 8c: Four accuracy phylogenetic trees involved in this study. 2c, PB1 (pdf 29.7 kb); 3c, PA (pdf 29.7 kb); 7c, MP (pdf 29.6 kb); 8c, NEP (pdf 29.5 kb). 1c (PB2), 4c (HA), 5c (NP), and 6c (NA) were put into the main text as Fig. 1 and Fig. 2. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.c.3642746_d1
title: Additional file 2: of The complexity of human infected AIV H5N6 isolated from China

description: 1bâ  8b: Large-scale phylogenetic trees involved in this study. 1b, PB2 (mts 17.0mb); 2b, PB1 (mts 16.8mb); 3b, PA (mts 16.7mb); 4b, HA (mts 4.90mb); 5b, NP (mts 17.5mb); 6b, NA (mts 4.62mb); 7b, MP (mts 18.7mb); 8b, NEP (mts 17.3mb). (ZIP 18 mb)
DOI: 10.6084/m9.figshare.c.3642746_d2
title: Additional file 1: of The complexity of human infected AIV H5N6 isolated from China

description: 1aâ  8a: Matrices of genomes involved in this study. 1a, PB2 (fas 4.73mb); 2a, PB1 (fas 4.72mb); 3a, PA (fas 4.45mb); 4a, HA (fas 1.88mb); 5a, NP (fas 3.26mb); 6a, NA (fas 1.62mb); 7a, MP (fas 2.33mb); 8a, NEP (fas 1.99mb). (ZIP 1 mb)
DOI: 10.6084/m9.figshare.c.3642725_d3
title: MOESM3 of Integrated chemometric fingerprints of antioxidant activities and HPLCâ  DADâ  CL for assessing the quality of the processed roots of Polygonum multiflorum Thunb. (Heshouwu)

description: Additional files 3. Comparison of activities in scavenging three ROS between different HSW samples.
DOI: 10.6084/m9.figshare.c.3642242_d1
title: Additional file 2 of SePIA: RNA and small RNA sequence processing, integration, and analysis

description: SePIA workflow scripts and files. A zip file containing essential workflow scripts and files, including full sample information for the case study. Scripts are configured to run in Docker and to reference a mount point called SePIA_external. See the README for instructions. (RAR 235 kb)
DOI: 10.6084/m9.figshare.c.3642206_d1
title: Additional file 1: of Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS

description: Network file containing all the networks presented in TableÂ  1 . (CYS 13422 kb)
DOI: 10.6084/m9.figshare.c.3642095_d1
title: Additional file 1: of An efficient method for protein function annotation based on multilayer protein networks

description: Supplementary Data are available, including Complexes.txt: The CYC2008 dataset, which consists of 408 protein complexes involving 1492 proteins in the yeast PPI network. DIP141001.txt: The DIP dataset, updated to Oct.1, 2014, consists of 5017 proteins and 23115 interactions among the proteins. Domain.txt: The domain data derived from Pfam database, including 1107 different types of domains among 3056 proteins. FP-MPN.exe: The FP-MPN algorithm. FPMPN.txt: The predicted results by FP-MPN. GO_C.txt, GO_F.txt and GO_P.txt: Represents cellular component (CC), molecular function (MF) and biological process (BP), respectively. (ZIP 437 kb)
DOI: 10.6084/m9.figshare.c.3642056_d1
title: Additional file 1 of Principal component gene set enrichment (PCGSE)

description: Supplementary figures for simulation and cell cycle examples. (PDF 698 kb)
DOI: 10.15468/dl.acsgex
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.29635 -16.35155,-73.30642 -16.40928,-73.22855 -16.42606,-73.16579 -16.41935,-73.20707 -16.34954,-73.29635 -16.35155))",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 132 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032616-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3641885_d5
title: Additional file 10: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Union Target File representing regions aggregated across ACE, SS, SSCR, NX, NG (that is, the union of platform specific target files) that contain loci associated with moderate and high-impact variants, mapped to GRCh37. (XLSX 181Â kb)
DOI: 10.6084/m9.figshare.c.3641885_d6
title: Additional file 3: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Defines regions of the MIG using chromosomal position information and relevant gene identifiers; the reference transcript used for gene definitions; and the sources from which the genes were drawn. (XLSX 4964Â kb)
DOI: 10.6084/m9.figshare.c.3641885_d4
title: Additional file 11: of Achieving high-sensitivity for clinical applications using augmented exome sequencing

description: Catalogue of exonic regions observed with &gt;70Â % high GC content. (XLSX 15115Â kb)
DOI: 10.6084/m9.figshare.c.3641882_d5
title: Additional file 1: Table S1. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The 207 tumor suppress genes (TSGs) with frequent copy number losses (CNLs). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3641882_d3
title: Additional file 3: Table S3. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The 81 tumor suppress genes (TSGs) with decreased gene expression potentially induced by copy number losses (CNLs). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3641882_d4
title: Additional file 5: Table S5. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The CNV frequency of 81 tumor suppress genes (TSGs) with decreased gene expression potentially induced by copy number losses (CNLs) in multiple cancers. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641882_d2
title: Additional file 4: Table S4. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: Functional enrichment results of 81 tumor suppress genes (TSGs) with decreased gene expression potentially induced by copy number losses (CNLs). (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3641882_d1
title: Additional file 2: Table S2. of Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study

description: The enriched pathways and interactors for the 207 tumor suppress genes (TSGs) with frequent copy number loss (CNL). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3641855_d2
title: Additional file 2: of A method for predicting protein complex in dynamic PPI networks

description: Krogan PPI data. (TXT 117 kb)
DOI: 10.6084/m9.figshare.c.3641819_d2
title: Additional file 1: of Differential sialotranscriptomes of unfed and fed Rhipicephalus haemaphysaloides, with particular regard to differentially expressed genes of cysteine proteases

description: Differentially expressed genes database and GO terms database involved in this paper. (ZIP 4091Â kb)
DOI: 10.6084/m9.figshare.c.3641855_d1
title: Additional file 3: of A method for predicting protein complex in dynamic PPI networks

description: GSE3431 gene expression data. (TXT 4397 kb)
DOI: 10.6084/m9.figshare.c.3641819_d1
title: Additional file 2: of Differential sialotranscriptomes of unfed and fed Rhipicephalus haemaphysaloides, with particular regard to differentially expressed genes of cysteine proteases

description: Details of all the proteins involved in the phylogenetic analysis of this paper. The text contained all the cysteine proteases form different species involved in this paper, including the proteases form R. haemaphysaloides(RH-) which were confirmed by the experiments. (TXT 65Â kb)
DOI: 10.6084/m9.figshare.c.3641768_d2
title: Additional file 1: of Informative gene selection and the direct classification of tumors based on relative simplicity

description: The binary-discriminative informative genes selected by RS method of nine datasets. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3641741_d8
title: Additional file 4: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

description: The details of the KEGG classification of the different comparisons. (rar 62.4 KB)
DOI: 10.6084/m9.figshare.c.3641768_d1
title: Additional file 2: of Informative gene selection and the direct classification of tumors based on relative simplicity

description: Source code of RS-based DC. (RAR 768 kb)
DOI: 10.6084/m9.figshare.c.3641741_d7
title: Additional file 3: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

description: Gene Ontology (GO) classification of the DEGs identified in different comparison between a pair of libraries. (rar 4.10 MB)
DOI: 10.6084/m9.figshare.c.3641741_d5
title: Additional file 5: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

description: The details of DTGs involved in Ca 2+ signalling pathway. (xls 100 KB)
DOI: 10.6084/m9.figshare.c.3641741_d6
title: Additional file 2: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

description: List of DEGs could be assigned as a GO term in different comparisons. (rar 1.92 MB)
DOI: 10.6084/m9.figshare.c.3641366_d7
title: MOESM2 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 2: Data S1. Alignments of all sequences.
DOI: 10.6084/m9.figshare.c.3641366_d5
title: MOESM4 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 4: Data S3. Xml file for *BEAST analysis of all loci.
DOI: 10.6084/m9.figshare.c.3641366_d3
title: MOESM1 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 1: Table S1. Samples used in the genetic analyses, including GenBank numbers.
DOI: 10.6084/m9.figshare.c.3641366_d2
title: MOESM3 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species

description: Additional file 3: Data S2. Xml file for BEAST analysis of cytochrome b.
DOI: 10.6084/m9.figshare.c.3641357_d1
title: MOESM1 of Quantitative metabolomics of the thermophilic methylotroph Bacillus methanolicus

description: Additional file 1 : List of metabolites with their abbreviations and InchI Code and InchI Key, raw data (i.e. analyte peak area and the corresponding concentration) and calibration coefficients.
DOI: 10.6084/m9.figshare.c.3641288_d3
title: MOESM1 of Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules

description: Additional file 1. Â Differential equations corresponding to the kinetic schemes shown in Fig. 7a (hexose products derived from cellulose) and in Fig. 7b (pentose products derived from hemicellulose).
DOI: 10.6084/m9.figshare.c.3641276_d5
title: Additional file 4 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: The significant pathways of top group pairs identified in the NCI60, BR and MCC datasets. (XLSX 21.9 kb)
DOI: 10.6084/m9.figshare.c.3641276_d4
title: Additional file 2 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Three separate â  ground-truthâ   databases for the NCI60, BR and MCC datasets, respectively. (XLSX 227 kb)
DOI: 10.6084/m9.figshare.c.3641276_d3
title: Additional file 3 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Experimentally confirmed interactions of the top COREs identified in the NCI60, BR and MCC datasets. (XLSX 33.5 kb)
DOI: 10.6084/m9.figshare.c.3641276_d1
title: Additional file 5 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Predicted miRNA-mRNA interactions identified by DICORE in the NCI60, BR and MCC datasets. (XLSX 14.0 kb)
DOI: 10.6084/m9.figshare.c.3641276_d2
title: Additional file 1 of Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

description: Differential expression profiles of miRNAs and mRNAs for the NCI60, BR and MCC datasets. (XLSX 2785 kb)
DOI: 10.6084/m9.figshare.c.3641234_d3
title: Additional file 2 of Prediction of aptamer-protein interacting pairs using an ensemble classifier in combination with various protein sequence attributes

description: The ranked feature list given by the Relief algorithm. Within the list, a feature with a smaller index indicates that it is more important for aptamer-protein interacting pair prediction. Such a list of ranked features are used to establish the optimal feature set in the IFS procedure. (XLS 56.5 kb)
DOI: 10.6084/m9.figshare.c.3641234_d1
title: Additional file 1 of Prediction of aptamer-protein interacting pairs using an ensemble classifier in combination with various protein sequence attributes

description: The benchmark dataset. The training dataset contains 580 positive and 1740 negative samples while the independent testing dataset consists of 145 positive and 435 negative samples. (XLS 441 kb)
DOI: 10.6084/m9.figshare.c.3641234_d2
title: Additional file 3 of Prediction of aptamer-protein interacting pairs using an ensemble classifier in combination with various protein sequence attributes

description: The Incremental Feature Selection (IFS) result. By adding features one by one from higher to lower rank, 654 different feature subsets are obtained. The ensemble predictor is then accordingly built for each feature subset and evaluated by 10-fold cross validation. (XLS 125 kb)
DOI: 10.6084/m9.figshare.c.3640820_d4
title: Additional file 1: Table S1. of Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized Toll-like receptor 4 agonist

description: LPS-responsive genes not suppressed by FT SchuS4. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3640820_d3
title: Additional file 2: Table S2. of Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized Toll-like receptor 4 agonist

description: LPS-responsive genes partially suppressed by FT SchuS4. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.c.3640820_d2
title: Additional file 3: Table S3. of Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized Toll-like receptor 4 agonist

description: LPS-responsive genes suppressed by FT SchuS4. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.c.3640814_d4
title: Additional file 4: of A shortened verbal autopsy instrument for use in routine mortality surveillance systems

description: Sensitivity by cause for each module in full and shortened PHMRC VAI. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640814_d1
title: Additional file 5: of A shortened verbal autopsy instrument for use in routine mortality surveillance systems

description: Specificity by cause for each module in full and shortened PHMRC VAI. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3640814_d2
title: Additional file 6: of A shortened verbal autopsy instrument for use in routine mortality surveillance systems

description: Chance-corrected concordance by cause for full Population Health Metrics Research Consortium verbal autopsy instrument (PHMRC VAI) as compared to the shortened PHMRC VAI by type of text items included in the analysis. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640799_d1
title: Additional file 1: Figure S1. of Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis

description: Genes with at least two-fold change in expression between UHRR and HBRR have a nearly even distribution in four quartiles in terms of transcript abundance based on normalized transcript read-counts from Illumina RNA-seq. Figure S2. a.) Spearman’s ranked r for all genes using log10 transformed read-counts. AmpliSeq showed a strong correlation to the two whole transcriptome RNA-seq methods as determined by Spearman’s ranked r. b.) Dotplots of gene expression between different sequencing platforms. Figure S3. Significant correlation (p  =0.89 (n = 13,747). (ZIP 295 kb)
DOI: 10.6084/m9.figshare.c.3640760_d6
title: Additional file 4: Table S4. of Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

description: 425 special CDSs in PCN033 (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3640469_d4
title: Additional file 3: Table S2. of Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

description: Codon adaptation index (CAI) analysis of MARV coding sequences. (XLSX 10Â kb)
DOI: 10.15468/dl.5bmj92
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is f314b0b0-e3dc-11d9-8d81-b8a03c50a862",
 "TaxonKey is Ctenotus colletti (Boulenger, 1896)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032617-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640253_d1
title: Additional file 1: of The impact of body mass index on short-term surgical outcomes after laparoscopic hepatectomy, a retrospective study

description: Available data. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.c.3640232_d9
title: Additional file 1: Table S1. of Proteomics analysis reveals differentially activated pathways that operate in peanut gynophores at different developmental stages

description: Specific proteins identified in S1 gynophores. (XLS 247 kb)
DOI: 10.5281/zenodo.14399341
title: Optical Levitation of Arrays of Microspheres

description: The videos "expand", "rearrange_1", "rearrange_2" and "Yshape" are data taken to illustrate the capabilities of the microspheres array sorting algorithm and independent control. Videos with the title "XXum_spacing-Y" are data taken for a 25 sphere array with the rows and columns separated by XX microns. Multiple videos were taken for each spacing, as indicated by the value for Y. The video "tracker_comparison_data" is a video of a single trapped sphere, which is used to characterize the performance of different object tracking methods. HDF5 files with the prefix "fast_sampling" are data taken of the spheres measurements on a quadrant photodiode with a 5 MHz sampling rate . The first 3 rows represent the X, Y and sum output of the quadrant photodiode. The fourth row indictates which sphere is being monitored. The HDF5 file "soreted_by_index" is data taken from the quadrant photodiode where data for each sphere is averaged and sorted through the time-sharing technique. The row number in the "X", "Y", and "SUM" groups indicates the sphere's index corresponding to said data.
DOI: 10.5281/zenodo.14399342
title: Optical Levitation of Arrays of Microspheres

description: The videos "expand", "rearrange_1", "rearrange_2" and "Yshape" are data taken to illustrate the capabilities of the microspheres array sorting algorithm and independent control. Videos with the title "XXum_spacing-Y" are data taken for a 25 sphere array with the rows and columns separated by XX microns. Multiple videos were taken for each spacing, as indicated by the value for Y. The video "tracker_comparison_data" is a video of a single trapped sphere, which is used to characterize the performance of different object tracking methods. HDF5 files with the prefix "fast_sampling" are data taken of the spheres measurements on a quadrant photodiode with a 5 MHz sampling rate . The first 3 rows represent the X, Y and sum output of the quadrant photodiode. The fourth row indictates which sphere is being monitored. The HDF5 file "soreted_by_index" is data taken from the quadrant photodiode where data for each sphere is averaged and sorted through the time-sharing technique. The row number in the "X", "Y", and "SUM" groups indicates the sphere's index corresponding to said data.
DOI: 10.15468/dl.3vfe57
title: Occurrence Download

description: A dataset containing 11075 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippopotamus amphibius Linnaeus, 1758"
 ]
}

 The dataset includes 11075 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032618-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639572_d1
title: Additional file 1: Figure S1a. of Designing and implementing a socioeconomic intervention to enhance TB control: operational evidence from the CRESIPT project in Peru

description: Details of the operational conditions to meet in order to receive double incentives. b: Details of the operational conditions to meet in order to receive simple incentives. (ZIP 492 kb)
DOI: 10.5281/zenodo.14427845
title: A sociopolitical Appraisal of Jerry Agada's Poetry"Never You Mind"
DOI: 10.5281/zenodo.14427846
title: A sociopolitical Appraisal of Jerry Agada's Poetry"Never You Mind"
DOI: 10.6084/m9.figshare.c.3638939_d7
title: Additional file 4: Table S6. of A comprehensive evaluation of interaction between genetic variants and use of menopausal hormone therapy on mammographic density

description: a Beta estimates for interaction between single nucleotide polymorphisms (SNPs) and use of hormone replacement therapy (MHT) on percent density and for association between SNP and percent density. b beta estimates for interaction between SNPs and use of MHT on dense area (cm2) and for association between SNPs and dense area (cm2). c beta estimates for interaction between SNPs and use of MHT on non-dense area (cm2) and for association between SNPs and non-dense area (cm2). (ZIP 2747 kb)
DOI: 10.6084/m9.figshare.c.3638225_d5
title: MOESM2 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 2. KEGG summary of Chinese giant salamander isogenes. A total of 23 712 isogenes were assigned to 317 KEGG pathways. For each pathway, the pathway definition, number of sequences and isogene ID were listed in the table.
DOI: 10.6084/m9.figshare.c.3638225_d3
title: MOESM9 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 9. A list of SNPs related to the RIG-I-like receptor signaling pathway (A) and the Toll-like receptor signaling pathway (B). 272 and 442 SNPs related to the RIG-I-like receptor and the Toll-like receptor signaling pathways, respectively, were listed in this additional file. The identical bases with reference sequences were indicated with â  â  â  .