cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6368395
title: Supporting files for: "So volcanoes created the dinosaurs? A quantitative characterization of the early evolution of terrestrial Pan-Aves"

description: Supplementary files for the manuscript "So volcanoes created the dinosaurs? A quantitative characterization of the early evolution of terrestrial Pan-Aves", published in Frontiers in Earth Science. The zip folder contains 3 subfolders, with datasets, scripts and results of analyses.
DOI: 10.6073/pasta/3cf164823661ea887f6d2057b8e25c45
title: Plant species composition data for Saddle grid, 1989 - ongoing.

description: Permanent 1-m^2 plots were established beside each of the 88 Saddle grid stakes in 1989 by Marilyn Walker, who led the sampling effort until 1997. Each plot was located within 2 m of the stake, but always in the same vegetation type as that associated with the stake. The distance and direction from the grid stake were randomly selected, and thus varied from plot to plot. Point quadrat measurements have been made at irregular intervals from 1989 to the present (1989, 1990, 1995, 1997, 2006, 2008, and yearly from 2010 onward). The point-quadrat technique used was identical to that described by Auerbach (1992) for sampling in 1989 to 1997: The point-quadrat method was used for estimating plant cover. The aluminum point-quadrat frame was 1 m^2 in size, with double-layer filament spaced 10 cm apart to make a 10 x 10 cm grid, for a total of 100 sample points per plot. Before sampling, the point-quadrat frame was leveled and plots were permanently marked in the following manner. Aluminum tags were nailed into the ground so that a frame could be repositioned in the same location from year to year; i.e., tags with a hole in the middle were used to define the locations for the point frame legs and four tags with a "X" stamped on them (positioned somewhere inside each of the frame corners) were used to define alignment of the frame by positioning the string crossings over these "X"s. Plant genus and species were recorded for top and bottom hits at each point for 1990-1997 data. In 1989, middle hits were also recorded. A plant species hit occurs when a plant part touches a thin metal stick placed at the intersection of 2 filaments in the quadrat. If plant parts of a given species touch the stick at multiple places, only one hit is recorded. In the next sampling year, 2006, and continuing to the present, all hits were recorded at each point, but frame distances were not measured. In addition, exact repositioning of the frame was not possible in some plots due to absence or relocation of tags. Data are formatted as one species hit per row (“string of pearls’).
DOI: 10.6084/m9.figshare.19729849
title: Training Samples

description: Flexible Manufacturing System (FMS) Model Training Samples<br>
DOI: 10.6084/m9.figshare.19729849.v2
title: Training Samples

description: Flexible Manufacturing System (FMS) Model Training Samples<br>
DOI: 10.13020/p4rw-z926
title: Data In Support Of Accounting For Spatio-Temporal Variation In Catachability In Joint Species Distribution Models

description: Fish data on six species (black crappie (Pomoxis nigromaculatus), bluegill (Lepomis macrochirus), largemouth bass (Micropterus salmoides), northern pike (Esox lucius), walleye (Sander vitreus), and yellow perch (perca flavescens)) caught in gill nets and trap nets between 2000 and 2019 during Minnesota Department of Natural Resources (MNDNR) fisheries surveys done in the months of June through September. Fish catch and effort (number of nets set overnight) comes from over 1,000 Minnesota lakes. In addition to fisheries data, we included additional information concerning lake characteristics, predicted water temperature, and watershed land use. Lake area and maximum depth were obtained from MNDNR public databases. Watershed land use was calculated using the 2016 National Land Cover Database. Water clarity, which is described by annual lake-specific median values derived from remotely sensed Secchi depth courtesy of Max Gilnes. Lastly, water temperatures simulated with the general lake model were also included. Data is now being released as part of the publication process related to the paper that references this data; which is listed below.
DOI: 10.5281/zenodo.6533870
title: Data of transgenerational effects of thermal stress in embryos of O. maya

description: To evaluate the transgenerational effect of thermal stress on the cephalopod <em>Octopus maya</em>, this study experimentally tests the morphology, respiratory metabolism, antioxidant mechanisms, and oxidative stress indicators of the embryos incubated at two temperatures (24 and 30°C) produced by females acclimated at 24 (non-stressed) and 30°C (stressed). The data set is organized in such a form that researchers will have embryo morphometric data (eye diameter, arm length, mantle length, yolk length, egg length egg wide, and wet weight of O. maya. Also, there is the oxygen consumption and antioxidant defense enzymes, oxidant damage, and esterase activity of embryos from stressed and nonstressed females. The results demonstrate that, regardless of their incubation temperature, embryos from females acclimated at 30°C are smaller, show more accelerated development, and have higher respiratory rates than those from females acclimated at 24°C. These embryos confirmed a greater oxidative stress degree, as well as an increased amount of soluble carbonylated proteins and catalase activity as the main enzyme during the activation development stage (even the highest in the embryos incubated at 30°C). Finally, a collapse of the antioxidant defense system was observed, measured as lower both CAT activity and GSH concentrations. Additionally, soluble carbonylated proteins reduced and GST activity increased in embryos incubated at 30°C from females maintained at high temperatures in a clear deleterious and transgenerational effect of thermal stress on this octopus species.
description: CR thanks Consejo Nacional de Ciencia y Tecnología for funding the project CONACYT 61503 and PAPIIT IN203022
DOI: 10.5281/zenodo.6533869
title: Data of transgenerational effects of thermal stress in embryos of O. maya

description: To evaluate the transgenerational effect of thermal stress on the cephalopod <em>Octopus maya</em>, this study experimentally tests the morphology, respiratory metabolism, antioxidant mechanisms, and oxidative stress indicators of the embryos incubated at two temperatures (24 and 30°C) produced by females acclimated at 24 (non-stressed) and 30°C (stressed). The data set is organized in such a form that researchers will have embryo morphometric data (eye diameter, arm length, mantle length, yolk length, egg length egg wide, and wet weight of O. maya. Also, there is the oxygen consumption and antioxidant defense enzymes, oxidant damage, and esterase activity of embryos from stressed and nonstressed females. The results demonstrate that, regardless of their incubation temperature, embryos from females acclimated at 30°C are smaller, show more accelerated development, and have higher respiratory rates than those from females acclimated at 24°C. These embryos confirmed a greater oxidative stress degree, as well as an increased amount of soluble carbonylated proteins and catalase activity as the main enzyme during the activation development stage (even the highest in the embryos incubated at 30°C). Finally, a collapse of the antioxidant defense system was observed, measured as lower both CAT activity and GSH concentrations. Additionally, soluble carbonylated proteins reduced and GST activity increased in embryos incubated at 30°C from females maintained at high temperatures in a clear deleterious and transgenerational effect of thermal stress on this octopus species.
description: CR thanks Consejo Nacional de Ciencia y Tecnología for funding the project CONACYT 61503 and PAPIIT IN203022
DOI: 10.6084/m9.figshare.19736032
title: PRISMA_2020_checklist (1).docx

description: PRISMA checklist for A Review of Wound Healing Mechanisms of Natural Products in Keratinocyte Cells
DOI: 10.6084/m9.figshare.19736032.v1
title: PRISMA_2020_checklist (1).docx

description: PRISMA checklist for A Review of Wound Healing Mechanisms of Natural Products in Keratinocyte Cells
DOI: 10.6084/m9.figshare.19735849
title: Long-term observation dataset of sediment dynamics and bed stability in East Creek, British Columbia, Canada

description: The data repository includes the data of streamflow, sediment transport, step stability, sediment storage, and wood storage with different periods in East Creek, Vancouver, British Columbia, Canada
DOI: 10.6084/m9.figshare.19735849.v2
title: Long-term observation dataset of sediment dynamics and bed stability in East Creek, British Columbia, Canada

description: The data repository includes the data of streamflow, sediment transport, step stability, sediment storage, and wood storage with different periods in East Creek, Vancouver, British Columbia, Canada
DOI: 10.5517/ccdc.csd.cc2bcynb
title: CCDC 2156442: Experimental Crystal Structure Determination

description: Related Article: Nour Elleuch, Omar Kammoun, Jerome Lhoste, Mohamed Boujelbene, Attia Boudjemline, Imran Ali Chaudhry, Isam Elbadawi, Mohamed Boujelbene, Mohamed Abdelhedi|2022|J.Mol.Struct.|1263|133142|doi:10.1016/j.molstruc.2022.133142
DOI: 10.5517/ccdc.csd.cc2bjp1m
title: CCDC 2160980: Experimental Crystal Structure Determination

description: Related Article: Dong-Sheng Liu, Feng-Qing Qiu, Yi-Xin Xu, Hua-Long Gu, Dong-Zheng Xi, Hong Zhong, Yan Sui|2022|J.Solid State Chem.|312|123161|doi:10.1016/j.jssc.2022.123161
DOI: 10.5517/ccdc.csd.cc2bjp2n
title: CCDC 2160981: Experimental Crystal Structure Determination

description: Related Article: Dong-Sheng Liu, Feng-Qing Qiu, Yi-Xin Xu, Hua-Long Gu, Dong-Zheng Xi, Hong Zhong, Yan Sui|2022|J.Solid State Chem.|312|123161|doi:10.1016/j.jssc.2022.123161
DOI: 10.5281/zenodo.6533926
title: Grafos de Coebrtura Tematica de Revistas da Area de Ciencia da Informacao

description: Grafos gerados a partir da extracao de termos com NLP e aplicando o Tesauro de CI, conforme notebook 10.5281/zenodo.6249967
DOI: 10.5281/zenodo.6533925
title: Grafos de Coebrtura Tematica de Revistas da Area de Ciencia da Informacao

description: Grafos gerados a partir da extracao de termos com NLP e aplicando o Tesauro de CI, conforme notebook 10.5281/zenodo.6249967
DOI: 10.5066/p9qt87bb
title: Aquatic Prey Resources in Response to Estuary Restoration in Willapa Bay, Washington (2014-2015)

description: The ongoing restoration of more than 200 hectares of estuarine habitat at Willapa National Wildlife Refuge, southwestern Washington, is expected to benefit a variety of species, including salmonids that use estuarine and tidal marshes as rearing and feeding areas as well as migratory waterbirds. During March through June 2014 and 2015, this study was initiated to assess aquatic prey resources. We collected data on environmental variables and invertebrate community structure, and the taskforce provided salmonid diet data at restored (Lewis Stream and Porter Point) and reference (Greenhead Slough and Ellsworth Creek) sites. We analyzed these data to determine the functional capacity of the estuary for supporting invertebrate prey resources for fish following restoration. These data support the following publication: Woo, I., Davis, M.J., and De La Cruz, S., 2018. Changes in aquatic prey resources in response to estuary restoration in Willapa Bay, southwestern Washington: U.S. Geological Survey Open-File Report 2018-1194, 32 p., https://doi.org/10.3133/ofr20181194.
DOI: 10.5281/zenodo.5106333
title: Teaching ESE Survey data set

description: Teaching ESE Survey data set
DOI: 10.15151/esrf-es-810727468
title: SAARLAND BAG: ATOMIC MECHANISMS OF ACTION OF MEMBRANE PROTEINS AND BIOSYNTHETIC ENZYMES

description: Projects are focussed primarily within the framework of the DFG-funded excellence network program on "Ca2+signals: Molecular Mechanisms und Integrative Functions" at Saarland University and a new joint multidisciplinary initiative of the University with the Helmholtz Institute of Pharmaceutical Research Saarland on natural bioactive compounds including their interactions with their target proteins. These projects involve the structure determination of membrane proteins and soluble proteins.
DOI: 10.34943/b6f99657-a004-4d7f-a427-ab0a4cc4b70f
title: Hercules Remotely Operated Vehicle Camera Deployed 2020-09-04

description: The Insite Pacific Zeus Plus HD Camera on Hercules ROV was deployed on 2020-09-04 on Hercules. This Remotely Operated Vehicle is operated by Ocean Exploration Trust. This device is a Remotely Operated Vehicle Camera. Remotely Operated Vehicle (ROV) video cameras are used for many purposes. Operators can use ROV cameras for instrument operations, navigation, and maintenance procedures. They can also monitor the composition, abundance, behaviour, and interactions of organisms, and investigate the characteristics of seafloor geology. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.6533235
title: Test Test

description: Test Test
DOI: 10.5281/zenodo.6533993
title: Test Test

description: Test Test
DOI: 10.5066/p9sc36i8
title: Growth and Capture-Mark-Recapture Data for San Francisco Gartersnakes, Thamnophis sirtalis tetrataenia, in San Mateo County, California from 2007 to 2020

description: This dataset includes records of captures of San Francisco gartersnakes (Thamnophis sirtalis tetrataenia) collected at five sites from 2007 to 2020. The data include measurements of snake snout-vent length to estimate growth patterns, snake sex, and the record of all captures of individual snakes for estimating capture probability, availability for capture, and survival. These data support the following publication: Rose, J.P., Kim, R., Schoenig, E.J., Lien, P.C. and Halstead, B.J., 2022. Integrating growth and survival models for flexible estimation of size-dependent survival in a cryptic, endangered snake. Ecology and Evolution, 12(4), https://doi.org/10.1002/ece3.8799.
DOI: 10.5281/zenodo.6533995
title: Test Test

description: Test Test
DOI: 10.5281/zenodo.6533996
title: Test Test

description: Test Test
DOI: 10.5281/zenodo.6533954
title: Additional data for "Tissue-specific impacts of aging and genetics on gene expression patterns in humans"

description: Additional files for paper "Tissue-specific impacts of aging and genetics on gene expression patterns in humans" by Yamamoto and Chung et al. 2021. Contains file of results from joint age and genetics model.
DOI: 10.5281/zenodo.6462248
title: WGS of E. coli K12 with PacBio HiFi

description: WGS of E. coli K12 with PacBio HiFi reads for genome assembly.
DOI: 10.5281/zenodo.6462247
title: WGS of E. coli K12 with PacBio HiFi

description: WGS of E. coli K12 with PacBio HiFi reads for genome assembly.
DOI: 10.5281/zenodo.6471351
title: Metagenomic Std ATCC MSA-1003: PacBio HiFi Reads FASTQ

description: WGS of mock metagenomic community ATCC MSA-1003 using PacBio HiFi (CCS) Sequencing
DOI: 10.5281/zenodo.6471350
title: Metagenomic Std ATCC MSA-1003: PacBio HiFi Reads FASTQ

description: WGS of mock metagenomic community ATCC MSA-1003 using PacBio HiFi (CCS) Sequencing
DOI: 10.5517/ccdc.csd.cc28bf24
title: CCDC 2095385: Experimental Crystal Structure Determination

description: Related Article: Sibo Wang, Bo Sun, Jing Sun, Xiangrong Hao, Xiao Li, Chen Zhou, Zhongmin Su|2022|Dyes Pigm.|202|110256|doi:10.1016/j.dyepig.2022.110256
DOI: 10.6084/m9.figshare.14544060
title: BSE49, a diverse, high-quality benchmark dataset of separation energies of chemical bonds

description: BSE49 is a data set of 4502 energies associated with bond separation reactions of 49 unique bond types.<br> <br> The dataset contains two different classifications of model structures referred to as “Existing” (molecules with associated experimental data) and “Hypothetical” (molecules with no associated experimental data). The dataset consists of 1951 datapoints for the "Existing" and 2443 datapoints for the "Hypothetical" class. The model systems present in the dataset are neutral molecules with X-H, X-F, X-Cl, X-X, and X-Y single bonds, where X and Y are B, C, N, O, Si, P, and S. The reference energies were calculated using the (RO)CBS-QB3 method. <br>
DOI: 10.6084/m9.figshare.14544060.v3
title: BSE49, a diverse, high-quality benchmark dataset of separation energies of chemical bonds

description: BSE49 is a data set of 4502 energies associated with bond separation reactions of 49 unique bond types.<br> <br> The dataset contains two different classifications of model structures referred to as “Existing” (molecules with associated experimental data) and “Hypothetical” (molecules with no associated experimental data). The dataset consists of 1951 datapoints for the "Existing" and 2443 datapoints for the "Hypothetical" class. The model systems present in the dataset are neutral molecules with X-H, X-F, X-Cl, X-X, and X-Y single bonds, where X and Y are B, C, N, O, Si, P, and S. The reference energies were calculated using the (RO)CBS-QB3 method. <br>
DOI: 10.6084/m9.figshare.14544060.v2
title: BSE49, a diverse, high-quality benchmark dataset of separation energies of chemical bonds

description: BSE49 is a data set of 4502 energies associated with bond separation reactions of 49 unique bond types. <br><br>The dataset contains two different classifications of model structures referred to as “Existing” (molecules with associated experimental data) and “Hypothetical” (molecules with no associated experimental data). The dataset consists of 1969 datapoints for the "Existing" and 2533 datapoints for the "Hypothetical" class. The model systems present in the dataset are neutral molecules with X-H, X-F, X-Cl, X-X, and X-Y single bonds, where X and Y are B, C, N, O, Si, P, and S. The reference energies were calculated using the (RO)CBS-QB3 method.<br>
DOI: 10.17632/k5vxsz5rsf.1
title: Dataset for "How sustainable is the nitrogen management in Brazil? A sustainability assessment using the Entropy Weight Method"

description: The main objective of this study is to assess the condition of nitrogen sustainability in Brazil over almost 20 years, considering the main sources of nitrogen pollution linked to agriculture and energy sectors, and related to the Sustainable Development Goals. For this, we compiled data from 31 indicators at the national level for the period 2000-2018, grouped into four subsystems (environmental, economic, social, and institutional). We applied the Entropy Weight Method (EWM) to measure the relevance of each indicator in each of the four subsystems, as well as the weight of each subsystem in the global outcome, that is, the nitrogen sustainability index. This dataset contains all data used to apply the EWM, as well as the results and graphics presented in the manuscript. It includes information such as data description, sources, and references. The application of the EWM was done step-by-step to facilitate its understanding (the methodological steps and all equations are also in the manuscript).
DOI: 10.17632/m97ncz6ryj.1
title: Transcription activation is enhanced by multivalent interactions independent of phase separation. Trojanowski et al.

description: Raw image data organized according to figures (zip-folders) and panels (first part of item name) of the study Trojanowski J, Frank L, Rademacher A, Mücke N, Grigaitis P, Rippe K (2022). Transcription activation is enhanced by multivalent interactions independent of phase separation. Mol Cell, https://doi.org/10.1016/j.molcel.2022.04.017.
DOI: 10.17632/8zzsz58kgg.1
title: HIRA-dependent boundaries between H3 variants shape early replication in mammals. Gatto et al.

description: Raw imaging data shown in Figure 1A, 6B and S1D
DOI: 10.21227/55ck-bc08
title: the near infrard spectra of corns

description: The near infrard spectra of 80 corns
DOI: 10.5281/zenodo.6525897
title: Data for "Direct Observation of Ultrafast Exciton Localization in an Organic Semiconductor with Soft X-ray Transient Absorption Spectroscopy"

description: Underlying data for figures 1-3 and supplementary figures S1-S7 for the paper entitled 'Direct Observation of Ultrafast Exciton Localization in an Organic Semiconductor with Soft X-ray Transient Absorption Spectroscopy'.
DOI: 10.5281/zenodo.5129207
title: Data for "Direct Observation of Ultrafast Exciton Localization in an Organic Semiconductor with Soft X-ray Transient Absorption Spectroscopy"

description: Underlying data for figures 1-3 and supplementary figures S1-S7 for the paper entitled 'Direct Observation of Ultrafast Exciton Localization in an Organic Semiconductor with Soft X-ray Transient Absorption Spectroscopy'.
DOI: 10.6084/m9.figshare.19100403.v1
title: Provenance of sandstones in the Hastings Block, southern New England Orogen: implications for tectonic setting

description: The Devonian–Carboniferous sandstones in the Hastings Block, southern New England Orogen have a predominantly arc-like provenance based on ternary QFL or QmFLt ternary diagrams and have a lower quartz content than Permian sandstones. Stratigraphically correlated formations show similar QFL components but not the same patterns of sandstone compositional variability for formations that outcrop over a wide area such as the Mingaletta and Pappinbarra formations. It is possible to correlate most of the petrological intervals in the Tamworth Belt with the Hastings Block. The trend of petrofacies from Devonian to Permian for the southern Tamworth Belt, Tamworth Belt overall and Hastings Block, is towards sandstone with more monocrystalline quartz and less feldspar and lithics. The areal pattern of sandstone compositions within individual formations shows similarities in the percentage of quartz, feldspar or lithics. This suggests areal continuity of sandstone compositions within a formation during deposition and that the faulting did not substantially change the formations continuity at the time of deposition. The arc-like provenance of Devonian to Permian sandstones within the Hastings Block indicates that the block was likely an along-strike continuation of the Tamworth Belt. KEY POINTSThe Devonian–Carboniferous sandstones have predominantly arc-like provenance on QFL or QmFLt ternary plots with a higher quartz content in younger formations.The Hastings Block and Tamworth Belt sandstones of comparable age are similar but not the same on ternary QFL and QmFLt plots.The areal pattern of the composition of sandstones within formations suggests that faulting was not active during deposition. The Devonian–Carboniferous sandstones have predominantly arc-like provenance on QFL or QmFLt ternary plots with a higher quartz content in younger formations. The Hastings Block and Tamworth Belt sandstones of comparable age are similar but not the same on ternary QFL and QmFLt plots. The areal pattern of the composition of sandstones within formations suggests that faulting was not active during deposition.