cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ag4vka
title: Occurrence Download

description: A dataset containing 1250 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nomada rufipes Fabricius, 1793",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 1250 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013515-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pggb9e
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Populus kangdingensis Z.Wang & S.L.Tung"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013518-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqx5nu
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis plicifer (Boulenger, 1882)"
 ]
}

 The dataset includes 122 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013517-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efd24x
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis pseudoasper (Guibé, 1974)"
 ]
}

 The dataset includes 109 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013519-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zjqxh
title: Occurrence Download

description: A dataset containing 76609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is NLD.9.4_1",
 "TaxonKey is Aves",
 "Year 2021-2021"
 ]
}

 The dataset includes 76609 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013511-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13928194
title: LCI_H2 delivery

description: The .csv file contains the full life cycle inventory built on SimaPro to compare the environmental impacts of different hydrogen delivery options. The inventory was built by the C1 unit of JRC. The report of the study can be found here: https://publications.jrc.ec.europa.eu/repository/handle/JRC137953
DOI: 10.5281/zenodo.13928195
title: LCI_H2 delivery

description: The .csv file contains the full life cycle inventory built on SimaPro to compare the environmental impacts of different hydrogen delivery options. The inventory was built by the C1 unit of JRC. The report of the study can be found here: https://publications.jrc.ec.europa.eu/repository/handle/JRC137953
DOI: 10.5281/zenodo.13913890
title: Data from 'Sustainability in the laboratory: evaluating the reuseability of microtiter plates for PCR and fragment detection'

description: This repository contains the data for the manuscript: Sustainability in the laboratory: evaluating the reuseability of microtiter plates for PCR and fragment detection.

The script can be found here: https://github.com/AneLivB/SGP

Files: 

R15*_R*.csv

The processed data used for the script. All other files of the same name format contain the same elements!





Columns: Rack_location, ID, all loci





Rack_location: the location on the microwell plate the individual had in the wet lab




ID: individual identification tag of the animal the DNA sample stems from




_a and _b denotes the first and second allele of all loci





Mismatches

A dataframe created by the script and later used to calcualte per treatment single-locus genotype error rates.





Columns: Rack.1, Rack.2, Treatment, No..of.mistyped.alleles, No..of.mistyped.reactions, No..of.reactions, Allelic.error.rate, Genotype.error.rate





Rack.1: One of three racks (R154, R155, R156) from the standard protocol




Rack.2: One of three racks (R154, R155, R156) from one of the other treatments (e.g. R154_R2, R154_R3, R154_R4)




Treatment: One of three treatments (Internal control, Reused detection plate, Reused PCR plate)




No..of.mistyped.alleles: Number of mismatched alleles within one treatment group, within a DNA plate




No..of.mistyped.reactions: Number of mismatched single-locus genotypes within one treatment group, within a DNA plate




No..of.reactions: Number of single-locus genotypes within one treatment group, within a DNA plate




Allelic.error.rate: Error rate per allele




Genotype.error.rate: Error rate per single-locus genotypes





model.mismatch.2.Rdata

RData file containing the model output.

 

Manuscript abstract: 

Single-use plastics (SUPs) are indispensable in laboratory research, but their disposal contributes substantially to environmental pollution. Consequently, reusing common SUP items such as microtiter plates represents a promising strategy for improving laboratory sustainability. However, the key challenge lies in determining whether SUP reuse can be implemented without sacrificing data quality. To investigate this, we conducted a simple experiment to assess the impact of reusing microtiter plates on microsatellite genotyping accuracy. Plates previously used for PCR and fragment detection were cleaned using an environmentally friendly method and then reused. Our results indicate that, while reusing PCR plates significantly increases genotyping error rates due to residual DNA contamination, detection plates can be reused without compromising data quality. Our approach offers laboratories a practical and sustainable option for reducing SUP waste and costs while maintaining research integrity.
DOI: 10.5281/zenodo.13913891
title: Data from 'Sustainability in the laboratory: evaluating the reuseability of microtiter plates for PCR and fragment detection'

description: This repository contains the data for the manuscript: Sustainability in the laboratory: evaluating the reuseability of microtiter plates for PCR and fragment detection.

The script can be found here: https://github.com/AneLivB/SGP

Files: 

R15*_R*.csv

The processed data used for the script. All other files of the same name format contain the same elements!





Columns: Rack_location, ID, all loci





Rack_location: the location on the microwell plate the individual had in the wet lab




ID: individual identification tag of the animal the DNA sample stems from




_a and _b denotes the first and second allele of all loci





Mismatches

A dataframe created by the script and later used to calcualte per treatment single-locus genotype error rates.





Columns: Rack.1, Rack.2, Treatment, No..of.mistyped.alleles, No..of.mistyped.reactions, No..of.reactions, Allelic.error.rate, Genotype.error.rate





Rack.1: One of three racks (R154, R155, R156) from the standard protocol




Rack.2: One of three racks (R154, R155, R156) from one of the other treatments (e.g. R154_R2, R154_R3, R154_R4)




Treatment: One of three treatments (Internal control, Reused detection plate, Reused PCR plate)




No..of.mistyped.alleles: Number of mismatched alleles within one treatment group, within a DNA plate




No..of.mistyped.reactions: Number of mismatched single-locus genotypes within one treatment group, within a DNA plate




No..of.reactions: Number of single-locus genotypes within one treatment group, within a DNA plate




Allelic.error.rate: Error rate per allele




Genotype.error.rate: Error rate per single-locus genotypes





model.mismatch.2.Rdata

RData file containing the model output.

 

Manuscript abstract: 

Single-use plastics (SUPs) are indispensable in laboratory research, but their disposal contributes substantially to environmental pollution. Consequently, reusing common SUP items such as microtiter plates represents a promising strategy for improving laboratory sustainability. However, the key challenge lies in determining whether SUP reuse can be implemented without sacrificing data quality. To investigate this, we conducted a simple experiment to assess the impact of reusing microtiter plates on microsatellite genotyping accuracy. Plates previously used for PCR and fragment detection were cleaned using an environmentally friendly method and then reused. Our results indicate that, while reusing PCR plates significantly increases genotyping error rates due to residual DNA contamination, detection plates can be reused without compromising data quality. Our approach offers laboratories a practical and sustainable option for reducing SUP waste and costs while maintaining research integrity.
DOI: 10.15468/dl.yh8a5w
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis redimitus (Boulenger, 1889)"
 ]
}

 The dataset includes 165 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013521-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uxmzx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis runewsweeki Vences & De la Riva, 2007"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013522-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8adxek
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((0.84179 51.01533,1.45101 51.01533,1.45101 51.42193,0.84179 51.42193,0.84179 51.01533))",
 "TaxonKey is Castor fiber Linnaeus, 1758"
 ]
}

 The dataset includes 63 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013523-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11516689
title: Infrared and Isotope data from cremated human remains

description: This dataset contains the infrared and isotopic data obtained from recently deceased cremated individuals of known residential history from the UTK Donated Skeletal Collection curated by the Forensic Anthropology Center (Knoxville, Tennessee). By carrying out these measurements on different bones with different turnover rates (i.e., otic capsule of the petrous part of the temporal bone, femur, and rib), we endeavor to reconstruct life histories of recently deceased cremated individuals and gain new insights into cremation practices. The results highlight differences in carbon and oxygen isotopes between different skeletal elements and confirm their potential to gather information about the way a body was burned (e.g. temperatures, fuel used). Strontium concentrations and isotope ratios were also measured to assess the geographical origin of these individuals. The use of strontium isotope ratios, however, seem to have limitations for individuals born in the last few decades due to globalization of consumed food resources.
DOI: 10.15468/dl.s4cq6f
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbodes pachycheilus (Herre, 1924)",
 "Country is Philippines"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013525-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwcrvd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis salegy (Andreone, Aprea, Vences & Odierna, 2003)"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013527-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sh6akb
title: Occurrence Download

description: A dataset containing 24564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.10.7.1_1",
 "TaxonKey is Aves",
 "Year 2021-2021"
 ]
}

 The dataset includes 24564 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013524-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5fxd89
title: Occurrence Download

description: A dataset containing 42641 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nymphalis antiopa (Linnaeus, 1758)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 42641 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013520-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgdm43
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis sculpturatus (Ahl, 1929)"
 ]
}

 The dataset includes 162 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013528-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4kvz6
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Berberis angulosa Wall."
 ]
}

 The dataset includes 136 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013529-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftrfx8
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis silvanus (Vences, Glaw & Andreone, 1997)"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013530-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/470
title: Have synergies between nitrogen deposition and atmospheric CO2 driven the recent enhancement of the terrestrial carbon sink? – dataset

description: The terrestrial carbon sink has increased since the turn of this century at a time of increased fossil fuel burning, yet the mechanisms enhancing this sink are not fully understood. Here, we assess the hypothesis that regional increases in nitrogen deposition since the early 2000s has alleviated nitrogen limitation and worked in tandem with enhanced CO2 fertilization to increase ecosystem productivity and carbon sequestration providing a causal link between the parallel increases in emissions and the global land carbon sink. We use the Community Land Model (CLM4.5-BGC) to estimate the influence of changes in atmospheric CO2, nitrogen deposition, climate, and their interactions to changes in net primary production (NPP), and net biome production (NBP). This data is gridded monthly output files for all simulations performed (see Table 1 of manuscript).
DOI: 10.15468/dl.a3svet
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbodes palaemophagus (Herre, 1924)",
 "Country is Philippines"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013531-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7dntms
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis striatus (Vences, Glaw, Andreone, Jesu & Schimmenti, 2002)"
 ]
}

 The dataset includes 29 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013532-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xek9ae
title: Occurrence Download

description: A dataset containing 809 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ochlodes faunus (Turati, 1905)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 809 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013534-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yksutt
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis thelenae (Glaw & Vences, 1994)"
 ]
}

 The dataset includes 31 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013535-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xmjbk
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis tschenki (Glaw & Vences, 2001)"
 ]
}

 The dataset includes 69 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013536-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvp47x
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis ventrimaculatus (Angel, 1935)"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013537-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bp877a
title: Occurrence Download

description: A dataset listing the 344 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is NLD.14.67_2",
 "TaxonKey is Aves",
 "Year 2021-2021"
 ]
}

 The dataset's 344 records were derived from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013508-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5s2hex
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis webbi (Grandison, 1953)"
 ]
}

 The dataset includes 32 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013539-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9fmrz
title: Occurrence Download

description: A dataset containing 1060 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Osmia leaiana (Kirby, 1802)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 1060 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013538-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4f2kh
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Barbodes palata Herre, 1924",
 "Country is Philippines"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013541-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxujua
title: Occurrence Download

description: A dataset containing 8596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ukraine",
 "TaxonKey is Quercus L."
 ]
}

 The dataset includes 8596 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013540-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqjjhc
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gephyromantis zavona (Vences, Andreone, Glaw & Randrianirina, 2003)"
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013542-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.