cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.2bvq83btj
title: Temporal structure of two call types produced by competing male cicadas

description: We investigated the behavior of Meimuna oparifera, which utilize two types
 of calls at close range. The calls were recorded multiple times with
 different pairs of cicadas. This data includes the type, onset and end of
 each call. Utilizing this data, you can quantify how M. opalifera
 responded to the calls of another male by calculating a phase difference.
description: We recorded the calls of male
 cicadas (<em>M</em>. <em>opalifera</em>) 23 times
 in total between Aug. 19th and Sep. 19th, 2019, and between Aug. 16th and
 Sep. 11th, 2020. In each experiment, we collected two males at the
 breeding site at the University of Tsukuba, Ibaraki, Japan, and
 immediately moved them to our laboratory. The collected cicadas were
 placed into cylindrical plastic cages (height: 12.5 cm, radius: 5.5 cm)
 that were set 150 cm apart. We recorded the calls of the cicadas by eight
 microphones (cx-500F, JTS) and audio recorders (R44, Roland) at 48.0 kHz
 sampling frequency and 16-bit quantization. Each experiment was started
 immediately after placing the cicadas into the cages and was continued
 between three and seven hours. From the audio recordings, we estimated
 the type, onset and end of
 each call.
DOI: 10.5281/zenodo.18401856
title: Establishing the Magnetoelastic Origin of Spin-Wave Routing through Focused Ion Beam Patterning
DOI: 10.5281/zenodo.18401855
title: Establishing the Magnetoelastic Origin of Spin-Wave Routing through Focused Ion Beam Patterning
DOI: 10.5061/dryad.nzs7h44vf
title: Data for: Photosystems in the eye-like organelles of heterotrophic warnowiid dinoflagellates

description: The function of the eye-like ocelloid in warnowiid dinoflagellates remains
 unknown because warnowiids are rare and uncultured, and scant molecular
 data exists for this group. While the ocelloid resembles the camera-type
 eyes found in animals, it is composed of organelles, with a highly
 modified plastid serving as the retinal body. By performing single-cell
 transcriptomics on cells isolated from the environment, we generate a
 comprehensive molecular dataset of warnowiids that includes all four known
 genera and one previously undescribed genus. We show that the
 heterotrophic members of this group have retained and express components
 of the ancestral photosynthetic mechanism, seemingly without photosystem
 II and RuBisCo. Our findings suggest that the ocelloid retinal body has
 repurposed the remaining photosystem to perform a function other than
 photosynthesis.
description: Cells of interest were
 isolated using a microcapillary pipet and placed into lysis
 buffer. cDNA extraction
 was performed according to SmartSeqII (Picelli et al.
 2014). Libraries were prepared at the Sequencing and
 Bioinformatics Consortium, University of British Columbia, and sequenced
 on the Nextseq platform.
DOI: 10.15463/kgzvq30st4x5bdw8
title: XML-TEI zum Liv-, est- und kurländischen Urkundenbuch: Band 3, 1. Abteilung: 1368–1393

description: Im Rahmen des Projekts zur kritischen Edition der Bände I 15 (1484–1488) und I 16 (1489–1494) des „Liv-, Est- und Kurländischen Urkundenbuchs“ werden von sämtlichen Bänden, sowohl den neuen als auch den alten, durchsuchbare PDF-Dateien mit Digitalisaten und Volltexten wie auch Forschungsdaten im Format XML-TEI hergestellt.
description: Das XML-TEI wurde durch die Firma textloop auf der Grundlage eines Retrodigitalisats des fraglichen Urkundenbuchs erstellt.
description: StructureConformsTo: XML-TEI basiert auf dem DTA-Basisschema, erweitert um notwendige Anpassungen/Erweiterungen nach der vom DTA empfohlenen Methode des Chaining-ODDs-Mechanismus.
Konkret wurden folgende Erweiterungen vorgenommen:
1. Um die für das Urkundenbuch typischen Textblöcke innerhalb eines Documents typisieren zu können, wurden zusätzliche Attributwerte für @type eingeführt
"document" = für das Dokument, enthält meist Regest, diplomatische
Beschreibung und Urkundentext
"abstract"= Regest
"diplDesc"= Diplomatische Beschreibung
"edText" = Text der Urkunde

2. Für das Attribut @rendition wurde der Attributwert "#n" hinzugefügt, über den im Urkundenbuch recte/normale Textpassagen innerhalb von kursiv gesetzten Textblöcken ausgewiesen werden. Alle sonstigen Attributwerte für @rendition sind DTA standardkonform.
description: ResourceDimension: 5080 Zeilen
description: CharacterEncoding: UTF-8
description: Latein
DOI: 10.5061/dryad.83bk3j9vm
title: Scale insects support natural enemies in both landscape trees and shrubs below them

description: Scale insects are frequently abundant on urban trees. Although scales can
 worsen tree condition, some tree species tolerate moderate scale
 densities. Scales are prey for many natural enemies. Therefore,
 scale-infested trees may conserve natural enemies in their canopies and in
 nearby plants. We examined if scale-infested oaks—Quercus phellos
 L.—hosted more natural enemies than scale-uninfested oaks—Q. acutissima
 Carruth. and Q. lyrata Walter in Raleigh, NC. USA. We also tested if
 natural enemies were more abundant in holly shrubs (Ilex spp.) planted
 below scale-infested compared to scale-uninfested oaks. We collected
 natural enemies from the canopies of both tree types and from holly shrubs
 planted below these trees. To determine if tree type affected the
 abundance of natural enemies that passively dispersed to shrubs, we
 created hanging cup traps to collect arthropods as they fell from trees.
 To determine if enemies became more abundant on shrubs below
 scale-infested compared to scale-uninfested trees over short time scales,
 we collected natural enemies from holly shrubs below each tree type at
 three to six-day intervals. Scale-infested trees hosted more natural
 enemies than scale-uninfested trees and shrubs below scale-infested trees
 hosted more natural enemies than shrubs under scale-uninfested trees.
 Natural enemy abundance in hanging cup traps did not differ by tree type;
 however, shrubs underneath scale-infested trees accumulated more natural
 enemies than shrubs under scale-uninfested trees in six to nine days.
 Tolerating moderate pest densities in urban trees may support natural
 enemy communities, and thus biological control services, in shrubs below
 them.
DOI: 10.5061/dryad.63xsj3v5g
title: Applications of machine learning tools for ultra-sensitive detection of lipoarabinomannan with plasmonic grating biosensors in clinical samples of tuberculosis

description: Background Tuberculosis is one of the top ten causes of death globally and
 the leading cause of death from a single infectious agent. Eradicating the
 Tuberculosis epidemic by 2030 is one of the top United Nations Sustainable
 Development Goals. Early diagnosis is essential to achieving this goal
 because it improves individual prognosis and reduces transmission rates of
 asymptomatic infected. We aim to support this goal by developing rapid and
 sensitive diagnostics using machine learning algorithms to minimize the
 need for expert intervention.  Methods and Findings A
 single-molecule fluorescence immunosorbent assay was used to detect the
 Tuberculosis biomarker lipoarabinomannan from a set of twenty clinical
 patient samples and a control set of spiked human urine. Tuberculosis
 status was separately confirmed by GeneXpert MTB/RIF and cell culture. Two
 machine learning algorithms, an automatic and a semiautomatic model, were
 developed and trained by the calibrated lipoarabinomannan titration assay
 data and then tested against the ground truth patient data. The
 semiautomatic model differed from the automatic model by an expert review
 step in the former, which calibrated the lower threshold to determine
 single molecules from background noise. The semiautomatic model was found
 to provide 88.89% clinical sensitivity, while the automatic model resulted
 in 77.78% clinical sensitivity. Conclusions The semiautomatic model
 outperformed the automatic model in clinical sensitivity as a result of
 the expert intervention applied during calibration and both models vastly
 outperformed manual expert counting in terms of time-to-detection and
 completion of analysis. Meanwhile, the clinical sensitivity of the
 automatic model could be improved significantly with a larger training
 dataset. In short, semiautomatic, and automatic Gaussian Mixture Models
 have a place in supporting rapid detection of Tuberculosis in
 resource-limited settings without sacrificing clinical sensitivity.
description: Fluorescence movies were collected on a BX51W1 Olympus microscope
 with Olympus UPlanSApo 60×/1.20 water-immersion objective using an
 ORCAFlash 2.8 CMOS camera with 5 s integration time. For all samples, at
 least 60 in-focus frames were collected per view, which varies from sample
 to sample due to lensing effects on the focus level of individual
 frames.
description: ImageJ can be used for analysis of the images. Some samples
 drifted and the sample drift was corrected using the open-source ImageJ
 plugin Align slices in stack.
DOI: 10.15463/jjsumd8catn0m5r4
title: XML-TEI zum Liv-, est- und kurländischen Urkundenbuch: Band 2, 1. Abteilung: 1301–1367

description: Im Rahmen des Projekts zur kritischen Edition der Bände I 15 (1484–1488) und I 16 (1489–1494) des „Liv-, Est- und Kurländischen Urkundenbuchs“ werden von sämtlichen Bänden, sowohl den neuen als auch den alten, durchsuchbare PDF-Dateien mit Digitalisaten und Volltexten wie auch Forschungsdaten im Format XML-TEI hergestellt.
description: Das XML-TEI wurde durch die Firma textloop auf der Grundlage eines Retrodigitalisats des fraglichen Urkundenbuchs erstellt.
description: StructureConformsTo: XML-TEI basiert auf dem DTA-Basisschema, erweitert um notwendige Anpassungen/Erweiterungen nach der vom DTA empfohlenen Methode des Chaining-ODDs-Mechanismus.
Konkret wurden folgende Erweiterungen vorgenommen:
1. Um die für das Urkundenbuch typischen Textblöcke innerhalb eines Documents typisieren zu können, wurden zusätzliche Attributwerte für @type eingeführt
"document" = für das Dokument, enthält meist Regest, diplomatische
Beschreibung und Urkundentext
"abstract"= Regest
"diplDesc"= Diplomatische Beschreibung
"edText" = Text der Urkunde

2. Für das Attribut @rendition wurde der Attributwert "#n" hinzugefügt, über den im Urkundenbuch recte/normale Textpassagen innerhalb von kursiv gesetzten Textblöcken ausgewiesen werden. Alle sonstigen Attributwerte für @rendition sind DTA standardkonform.
description: ResourceDimension: 4854 Zeilen
description: CharacterEncoding: UTF-8
description: Latein
DOI: 10.5068/d18390
title: Meal selection when plant-based food is presented as the default for a catered event

description: Current food consumption patterns are unsustainable and will prevent
 humanity from staying within established boundaries for anthropogenic
 change. Behavioral change is a potentially high impact strategy for
 staying within boundaries. The goal of our work was to explore the
 effectiveness of a plant-based default in increasing plant-based meal
 consumption. Data collection was performed at a catered event on a college
 campus. Eligibility of individual participants included being 18 years or
 older and an invitation to RSVP for an enrolled event. Participants were
 randomly assigned to one of two groups: the control group received a RSVP
 form that presented a meat meal as the default catering option whereas the
 intervention group received a form that presented a plant-based meal as
 the default. The primary outcome of interest in each group was the
 proportion of participants who selected plant-based meals.
DOI: 10.15463/5sct7facxya2zcyw
title: XML-TEI zum Liv-, est- und kurländischen Urkundenbuch: Band 14, 1. Abteilung: 1480–1483

description: Im Rahmen des Projekts zur kritischen Edition der Bände I 15 (1484–1488) und I 16 (1489–1494) des „Liv-, Est- und Kurländischen Urkundenbuchs“ werden von sämtlichen Bänden, sowohl den neuen als auch den alten, durchsuchbare PDF-Dateien mit Digitalisaten und Volltexten wie auch Forschungsdaten im Format XML-TEI hergestellt.
description: Das XML-TEI wurde durch die Firma textloop auf der Grundlage eines Retrodigitalisats des fraglichen Urkundenbuchs erstellt.
description: StructureConformsTo: XML-TEI basiert auf dem DTA-Basisschema, erweitert um notwendige Anpassungen/Erweiterungen nach der vom DTA empfohlenen Methode des Chaining-ODDs-Mechanismus.
Konkret wurden folgende Erweiterungen vorgenommen:
1. Um die für das Urkundenbuch typischen Textblöcke innerhalb eines Documents typisieren zu können, wurden zusätzliche Attributwerte für @type eingeführt
"document" = für das Dokument, enthält meist Regest, diplomatische
Beschreibung und Urkundentext
"abstract"= Regest
"diplDesc"= Diplomatische Beschreibung
"edText" = Text der Urkunde

2. Für das Attribut @rendition wurde der Attributwert "#n" hinzugefügt, über den im Urkundenbuch recte/normale Textpassagen innerhalb von kursiv gesetzten Textblöcken ausgewiesen werden. Alle sonstigen Attributwerte für @rendition sind DTA standardkonform.
description: ResourceDimension: 13860 Zeilen
description: CharacterEncoding: UTF-8
description: Latein
DOI: 10.5061/dryad.5x69p8d6r
title: Throughfall exclusion and fertilization effects on tropical dry forest tree plantations, a large-scale experiment

description: Across tropical ecosystems, global environmental change is causing drier
 climatic conditions and increased nutrient deposition. Such changes
 represent large uncertainties due to unknown interactions between drought
 and nutrient availability in controlling ecosystem net primary
 productivity (NPP). Using a large-scale manipulative experiment, we
 studied for 4 years whether nutrient availability affects the individual
 and integrated responses of aboveground and belowground ecosystem
 processes to throughfall exclusion in 30-year-old mixed plantations of
 tropical dry forest tree species in Guanacaste, Costa Rica. We used a
 factorial design with four treatments: control, fertilization (F), drought
 (D), and drought + fertilization (D + F). While we found that a 13 %–15 %
 reduction in soil moisture only led to weak effects in the studied
 ecosystem processes, NPP increased as a function of F and D + F. The
 relative contribution of each biomass flux to NPP varied depending on the
 treatment, with woody biomass being more important for F and root biomass
 for D + F and D. Moreover, the F treatment showed modest increases in
 maximum canopy cover. Plant functional type (i.e., N fixation or
 deciduousness) and not the experimental manipulations was the main source
 of variation in tree growth. Belowground processes also responded to
 experimental treatments, as we found a decrease in nodulation for F plots
 and an increase in microbial carbon use efficiency 25 for F and D plots.
 Our results emphasize that nutrient availability, more so than modest
 reductions in soil moisture, limits ecosystem processes in tropical dry
 forests and that soil fertility interactions with other aspects of drought
 intensity (e.g., vapor pressure deficit) are yet to be explored.
DOI: 10.5281/zenodo.15378979
title: Exploring metabolic signatures in urine using NMR for improved prognosis of gliomas.

description: NMR spectra data for different glioma grades and control.
DOI: 10.5281/zenodo.15378978
title: Exploring metabolic signatures in urine using NMR for improved prognosis of gliomas.

description: NMR spectra data for different glioma grades and control.
DOI: 10.5061/dryad.fn2z34tz1
title: Linking animal behaviour and tree recruitment: Caching decisions by a scatter hoarder corvid determine seed fate in a Mediterranean agroforestry system

description: 1. Seed dispersal by scatter-hoarder corvids is key for the establishment
 of important tree species from the Holarctic region such as the walnut
 (Juglans regia). However, the factors that drive animal decisions to cache
 seeds in specific locations and the consequences of these decisions on
 seed fate are poorly understood.  2. We experimentally created
 four distinct, replicated habitat types in a Mediterranean agricultural
 landscape where the Eurasian magpie (Pica pica) is a common
 scatter-hoarder: soft bare soil; compacted bare soil; compacted soil with
 a dense herbaceous cover; and soft linear bare soil made up of
 the irrigation furrows that separated the rest of the
 treatments. We also experimentally placed visual landmarks
 (stones, sticks, and bunches of dry plants) to test if magpies use them to
 place seed caches. Walnut dispersal from feeders to the habitats was
 monitored by radio-tracking and camera traps.  3. A sowing
 experiment simulating natural caches tested the effect of caching type on
 seed germination and seedling emergence. Seed mass was controlled for the
 dispersal and sowing experiments. 4. Magpies selected the two habitats
 with soft soil, and avoided the one with compacted soil, to cache nuts.
 Seed mass did not affect dispersal distance, germination, or emergence;
 however, heavier seeds were cached more often under litter and in the
 habitat with herbaceous cover, whereas lighter seeds were more often
 buried in the soft bare soil habitat. Seed burial under soil or litter
 determined seed fate, as there was virtually no emergence from unburied
 nuts. There was no evidence of any effect of the visual landmarks. 5.
 Synthesis. The consequences of seed caching for seedling early
 establishment are driven by a fine decision-making process of the
 disperser. Magpies seemed to ponder the characteristics of the habitat and
 the seed itself to determine where and how to cache each nut. By doing so,
 magpies reinforced the quality of seed dispersal effectiveness, as they
 cached walnuts in locations that enhanced both seed survival and seedling
 emergence.
DOI: 10.15463/9m9x1bhb12kvdu1k
title: XML-TEI zum Liv-, est- und kurländischen Urkundenbuch: Band 13, 1. Abteilung: 1472–1479

description: Im Rahmen des Projekts zur kritischen Edition der Bände I 15 (1484–1488) und I 16 (1489–1494) des „Liv-, Est- und Kurländischen Urkundenbuchs“ werden von sämtlichen Bänden, sowohl den neuen als auch den alten, durchsuchbare PDF-Dateien mit Digitalisaten und Volltexten wie auch Forschungsdaten im Format XML-TEI hergestellt.
description: Das XML-TEI wurde durch die Firma textloop auf der Grundlage eines Retrodigitalisats des fraglichen Urkundenbuchs erstellt.
description: StructureConformsTo: XML-TEI basiert auf dem DTA-Basisschema, erweitert um notwendige Anpassungen/Erweiterungen nach der vom DTA empfohlenen Methode des Chaining-ODDs-Mechanismus.
Konkret wurden folgende Erweiterungen vorgenommen:
1. Um die für das Urkundenbuch typischen Textblöcke innerhalb eines Documents typisieren zu können, wurden zusätzliche Attributwerte für @type eingeführt
"document" = für das Dokument, enthält meist Regest, diplomatische
Beschreibung und Urkundentext
"abstract"= Regest
"diplDesc"= Diplomatische Beschreibung
"edText" = Text der Urkunde

2. Für das Attribut @rendition wurde der Attributwert "#n" hinzugefügt, über den im Urkundenbuch recte/normale Textpassagen innerhalb von kursiv gesetzten Textblöcken ausgewiesen werden. Alle sonstigen Attributwerte für @rendition sind DTA standardkonform.
description: ResourceDimension: 11329 Zeilen
description: CharacterEncoding: UTF-8
description: Latein
DOI: 10.5061/dryad.73n5tb313
title: Allium sulaimanicum, a new Allium species and section from Pakistan

description: A new species Allium sulaimanicum is described from northern Balochistan
 and southern Khyper Pakhtunkhwa in Pakistan based on morphological,
 molecular and cytological studies. The new species is characterised by
 long runner-like cylindrical rhizomes of adult plants, cylindrical bulbs,
 linear leaves with minute soft hairs along veins, campanulate perigonium,
 white to creamy white, ovate to elliptical, 4.5–5 mm long acute tepals,
 with brownish to purplish nerves, stamens as long as to slightly longer
 than tepals, yellow to brick red anthers, hexagonal ovary, white and
 papillate/warty along angles. The presence of long herbaceous rhizome
 indicated serious isolation of the new species hence, a new section
 Sulaimanicum is proposed to accommodate the new species. The new species
 is diploid with a chromosome number of 2n =16. Detailed morphological
 description, illustrations, phylogenetic analyses based on sequences of
 plastid spacers (rpl32-trnL (UAG) and trnQ-rps16) and nuclear ITS,
 karyotype features and a distribution map of the new species are provided.
description: <strong>Phylogenetic
 analyses</strong>—Both data sets (nrITS and the cpDNA
 <em>rpl</em>32-<em>trn</em>L markers) were analysed separately for position identification in the third evolutionary lineage and to find the closest relatives of <em>A</em>. <em>sulaimanicum</em> through Fitch parsimony with the heuristic search option in PAUP* version 4.0b10 (Swofford, 2002) with MULTREES, TBR branch swapping and 100 replicates of random addition sequence. Gaps were treated as missing data. The consistency index (CI) (Kluge & Farris, 1969) was calculated to estimate the amount of homoplasy in the character set. The most parsimonious trees returned by the analysis were summarized in one consensus tree using the strict consensus method. Bootstrap analyses (BS) using 1,000 pseudoreplicates were performed to assess the support of the clades (Felsenstein, 1985). Bayesian phylogenetic analyses were also performed using MrBayes 3.1.23 (Ronquist & Huelsenbeck, 2003). The sequence evolution model was chosen following the Akaike Information Criterion (AIC) obtained from jModelTest2 (Dariba et al. 2012). Two independent analyses with four Markov chains were run for 10 million generations, sampling trees every 100 generations. The first 25% of trees were discarded as burn-in. The remaining 150,000 trees were combined into a single data set, and a majority-rule consensus tree was obtained along with posterior probabilities (PP).
DOI: 10.5061/dryad.69p8cz956
title: Data for: Loss of the world's smallest forests

description: A large number of small forests typically harbor higher biodiversity than
 a small number of large forests totaling the same area, suggesting that
 small patches are disproportionately valuable for biodiversity
 conservation. However, policies often favor protection of large forest
 patches. Here we demonstrate a global trend of higher deforestation in
 small than large forest patches: the likelihood that a randomly-selected
 forest plot disappeared between 1992 and 2020 increased with decreasing
 size of the forest patch containing that plot. Our results imply a
 disproportionate impact of forest loss on biodiversity relative to the
 total forest area removed. Achieving recent commitments of the post-2020
 Global Biodiversity Framework will require revision of current policies
 and increased societal awareness of the importance of small habitat
 patches for biodiversity protection.
description: Data is openly available online (links provided in the
 supplementary material of the original publication) and was processed
 following the steps outlined in the attached R script. 
description: Data is provided in .csv and .tif formats and is manageable using
 software R.