cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29332769
title: Supplementary Tables for Physiological Genomics Paper by Rhen et al. 2025

description: We studied the impact of hypoxic incubation on the cardiac transcriptome in American alligator embryos. Details of the experiment can be found in the paper by Rhen et al., 2025. In brief, Alligator eggs were incubated in normoxic (21% O₂) or hypoxic (10% O₂) conditions for most of embryogenesis. We then sampled embryos at 70% and 90% of development to determine the effect of hypoxia, age, and the interaction between hypoxia and age on gene expression profiles in hearts. Supplementary Table 1 is a list of genes that were differentially expressed between hearts in hypoxic versus normoxic conditions. Supplementary Table 2 is a list of genes that were differentially expressed between hearts of embryos at 70% and 90% of embryogenesis. Supplementary Table 3 is a list of genes that were affected by the oxygen by age interaction. In Supplementary Table 4, hypoxia-regulated genes in alligator embryo hearts were compared to genes from a comprehensive meta-analysis of hypoxia-regulated genes in human and mouse by Bono and Hirota (Meta-analysis of hypoxic transcriptomes from public databases. <i>Biomedicines</i> 8:10, 2020).
DOI: 10.6084/m9.figshare.29332769.v1
title: Supplementary Tables for Physiological Genomics Paper by Rhen et al. 2025

description: We studied the impact of hypoxic incubation on the cardiac transcriptome in American alligator embryos. Details of the experiment can be found in the paper by Rhen et al., 2025. In brief, Alligator eggs were incubated in normoxic (21% O₂) or hypoxic (10% O₂) conditions for most of embryogenesis. We then sampled embryos at 70% and 90% of development to determine the effect of hypoxia, age, and the interaction between hypoxia and age on gene expression profiles in hearts. Supplementary Table 1 is a list of genes that were differentially expressed between hearts in hypoxic versus normoxic conditions. Supplementary Table 2 is a list of genes that were differentially expressed between hearts of embryos at 70% and 90% of embryogenesis. Supplementary Table 3 is a list of genes that were affected by the oxygen by age interaction. In Supplementary Table 4, hypoxia-regulated genes in alligator embryo hearts were compared to genes from a comprehensive meta-analysis of hypoxia-regulated genes in human and mouse by Bono and Hirota (Meta-analysis of hypoxic transcriptomes from public databases. <i>Biomedicines</i> 8:10, 2020).
DOI: 10.15468/dl.q439yu
title: Occurrence Download

description: A dataset containing 162612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Viola altaica Ker Gawl., Draba incana L., Silene uniflora Roth, Euphrasia frigida Pugsley, Plantago maritima L.)",
 "Geometry POLYGON ((-180 45.53015, 180 45.53015, 180 83.62313, -180 83.62313, -180 45.53015))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "CoordinateUncertaintyInMeters is less than or equal to 50000"
 ]
}

 The dataset includes 162612 records from 337 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049373-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/2946faa7324d3695309c2e3dea182d5f
title: UCSB SONGS Mitigation Monitoring: Wetland Performance Standard - Water Quality

description: These data describe annual estimates of wetland water quality, measured as the average duration of hypoxia (time dissolved oxygen concentration below 3 mg/l), collected as part of the SONGS San Dieguito Wetland Restoration mitigation monitoring program designed to evaluate compliance of the restoration project with conditions of the SONGS permit. 
This study began in 2012 in the San Dieguito Wetlands and Tijuana Estuary in San Diego County, CA, Carpinteria Salt Marsh in Santa Barbara County, CA, and Point Mugu Lagoon in Ventura County, CA. 
Beginning in 2024, Tijuana Estuary was replaced with Los Penasquitos Lagoon in San Diego County, CA.
DOI: 10.15468/dl.cdgtra
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hydromorphus concolor Peters, 1859"
 ]
}

 The dataset includes 125 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049391-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2t879
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Suriname",
 "TaxonKey is Johnbelkinia longipes (Fabricius, 1805)"
 ]
}

 The dataset includes 28 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049390-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmvecy
title: Occurrence Download

description: A dataset containing 427397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-05-22",
 "EventDate is less than or equal to 2025-06-21",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 427397 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049375-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkkbd6
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Merostachys ximenae Pianiss., Vinic.-Silva & L.G.Clark"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049392-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cfq6k
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schinus areira L.",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 84 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049394-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrd9vp
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Metlapilcoatlus olmec (Perez-Higareda, Smith & Julia-Zertuche, 1985)"
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049393-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/448814384259f969295ba4a570086ac5
title: UCSB SONGS Mitigation Monitoring: Reef Survey - Benthic Algae and Invertebrate Abundance

description: These data describe annual estimates of the density of benthic algae and macroinvertebrates at three subtidal reefs collected as part of the San Onofre Nuclear Generating Station (SONGS) Mitigation Monitoring Program. 
Data collection began in 2009 at an artificial reef (Wheeler North Reef in Orange County, CA) and two natural reference reefs (San Mateo Kelp in Orange County, CA and Barn Kelp in San Diego County, CA). 
In the summer of each year, divers identified and counted species of benthic algae and macroinvertebrates in quadrats of varying size that were uniformly distributed along fixed transects at each reef.
DOI: 10.15468/dl.a5yggy
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Suriname",
 "TaxonKey is Johnbelkinia longipes (Fabricius, 1805)"
 ]
}

 The dataset's 2 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049386-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1125918
title: Data from Archaeological Works at Triton Knoll Electrical System, Lincolnshire, 2018-2020

description: This collection includes site photographs, reports, spreadsheets and GIS data from archaeological works undertaken by Headland Archaeology (UK) Ltd and Allen Archaeology Ltd between 2018 and 2020 for the electrical system and sub-station site of the Triton Knoll Offshore Wind Farm for Triton Knoll Offshore Wind Farm Limited (TKOWFL). The data is split into 4 landscape blocks: Coastal, Fen Edge, Inland Fen Edge, and Lincolnshire Marsh.
DOI: 10.15468/dl.ndkr8g
title: Occurrence Download

description: A dataset containing 562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schinus latifolia (Gillies ex Lindl.) Engl.",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 562 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049395-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/376440821c2eff1231450b55a1a618ac
title: UCSB SONGS Mitigation Monitoring: Reef Survey - Benthic Algae, Invertebrate, and Substrate Cover

description: These data describe annual estimates of the percent cover of benthic macroalgae, sessile macroinvertebrates, and hard and soft substrates at three subtidal reefs collected as part of the San Onofre Nuclear Generating Station (SONGS) Mitigation Monitoring Program. 
Data collection began in 2009 at an artificial reef (Wheeler North Reef in Orange County, CA) and two natural reference reefs (San Mateo Kelp in Orange County, CA and Barn Kelp in San Diego County, CA). 
In the summer of each year, divers identified and recorded species of sessile algae and macroinvertebrates, and substrate types under twenty uniformly placed points within five 1 m2 quadrats that were uniformly distributed along semi-permanent transects at each reef.
DOI: 10.15468/dl.nesk4f
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nothofagus alessandrii Espinosa",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 65 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049397-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4udnj
title: Occurrence Download

description: A dataset containing 9191078 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "EndDayOfYear 1-366",
 "EstablishmentMeans is one of (nativeReintroduced, native)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IsInCluster is false",
 "OccurrenceStatus is Present",
 "StartDayOfYear 1-366",
 "TaxonKey is Aves",
 "Year 1979-2020"
 ]
}

 The dataset includes 9191078 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049349-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.383h5g
title: Occurrence Download

description: A dataset containing 1518796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aglaonema nitidum (Jack) Kunth, Ambystoma mavortium Baird, 1850, Anser caerulescens (Linnaeus, 1758), Dendrosenecio johnstonii (Oliv.) B.Nord., Enicostema axillare (Lam.) A.Raynal, Diploderma polygonatum Hallowell, 1861, Juncus arcticus Willd., Lepidomeda mollispinis Miller & Hubbs, 1960, Matricaria chamomilla L., Pulsatilla montana (Hoppe) Rchb., Salicornia europaea (Moss) Lambinon & Vanderp., Abroma augustum (L.) L.fil., Callianthe darwinii (Hook.fil.) Donnell, Callianthe megapotamica (A.Spreng.) Dorr, Abutilon striatum Dicks., Acmella grandiflora (Turcz.) R.K.Jansen, Adenophyllum porophyllum (Cav.) Hemsl., Aeschynanthus hookeri C.B.Clarke, Aesculus flava Sol., Alectryon oleifolius (Desf.) S.T.Reynolds, Allium senescens L., Naucoria scolecina (Fr.) Quél., Amalaraeus penicilliger (Grube, 1851), Amanita excelsa (Fr.) Bertill., Ampelopsis glandulosa (Wall.) Momiy., Anatoecus dentatus (Scopoli, 1763), Anatoecus icterodes (Nitzsch, 1818), Lycopsis arvensis L., Anthurium pentaphyllum (Aubl.) G.Don, Anthurus muellerianus Kalchbr.)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970"
 ]
}

 The dataset includes 1518796 records from 2504 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049368-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.guyvhg
title: Occurrence Download

description: A dataset containing 2901 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus durissus Linnaeus, 1758"
 ]
}

 The dataset includes 2901 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022069-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmsiej
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acaena argentea Ruiz & Pav.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 38 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002133-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8i8dla
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Etlingera urophylla A.D.Poulsen"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035121-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lcmqma
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rollinia laurifolia Schltdl."
 ]
}

 The dataset includes 221 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001717-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pns1gp
title: Occurrence Download

description: A dataset containing 309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Furipterus horrens (F.Cuvier, 1828)"
 ]
}

 The dataset includes 309 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002133-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.30tdyx
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paphiopedilum gigantifolium Braem, M.L.Baker & C.O.Baker"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035122-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/e4786651-8481-4b62-a98e-377f9a251640
title: Data underpinning Peng Ma's thesis

description: The data files are embargoed until 22/07/2024
DOI: 10.15468/dl.ooa6at
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ornithogalum iraqense Feinbrun"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002133-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sujljz
title: Occurrence Download

description: A dataset containing 32339 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ailanthus altissima (Mill.) Swingle"
 ]
}

 The dataset includes 32339 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011965-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfdtm8
title: Occurrence Download

description: A dataset containing 352908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinopterygii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-81.73828 13.0174, -81.73828 -11.57475, -59.58984 -11.57475, -59.58984 13.0174, -81.73828 13.0174))"
 ]
}

 The dataset includes 352908 records from 339 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0342829-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zowxim
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nypa fruticans Wurmb"
 ]
}

 The dataset includes 493 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002133-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ac1pg6
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pitcairnia punicea Scheidw."
 ]
}

 The dataset includes 116 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001924-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wb3huy
title: Occurrence Download

description: A dataset containing 13859 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhinotermitidae"
 ]
}

 The dataset includes 13859 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053960-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjsesq
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Dendrocopos leucotos (Bechstein, 1802)"
 ]
}

 The dataset includes 256 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029878-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uad7k
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mytilus trossulus A.Gould, 1850"
 ]
}

 The dataset includes 302 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006277-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eugkd7
title: Occurrence Download

description: A dataset containing 23689041 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Mexico"
 ]
}

 The dataset includes 23689041 records from 3366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045700-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ux7mfs
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Peru, Ecuador)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Cenchrus echinatus L., Cenchrus echinatus Torr., 1838, Cenchrus echinatus A.Rich., 1850, Cenchrus echinatus Duss, 1897, Cenchrus echinatus Cav., Cenchrus echinatus Steud. ex Döll, Cenchrus echinatus Steud., Cenchrus echinatus var. longispinus (Hack.) Jansen & Wacht., Cenchrus echinatus var. hillebrandianus (Hitchc.) F.Br., Cenchrus echinatus f. longispinus Hack.)"
 ]
}

 The dataset includes 136 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138709-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zq77us
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spiraea trilobata L.",
 "Year is greater than or equal to 1981",
 "HasCoordinate is true"
 ]
}

 The dataset includes 423 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292159-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8fmdp
title: Occurrence Download

description: A dataset containing 713 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aonyx capensis (Schinz, 1821)"
 ]
}

 The dataset includes 713 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138695-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.