cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4228/zalf-6fks-c344
title: Soil heterogeneity in sandy soils of an afforestation area at Müncheberg, Brandenburg

description: The Leibniz Centre for Agricultural Landscape Research (ZALF) afforested in cooperation with the Außenstelle der Bundesanstalt für Forstpflanzenzüchtung in Waldsieversdorf a formerly arable sandy soil at the ZALF experimental field site. Here we aimed to reflect on the spatial distribution of soil properties like the cation exchange capacity (CEC), pH and organic carbon (Corg) content within the area of the experimental field. The experimental field consists of two plots: one planted with birch (March 1995) and one planted with Larch (March 1997). At each plot samples from the layers of a soil profile were collected up to a depth of about 1m. Additionally at each plot topsoil samples were collected from 12 location along transects (see figure at the bottom) at 0 to 5, 5 to 10, 10 to 15, 15 to 20, 20 to 25 and 25 to 30 cm. All soil samples were air dried, sieved to pass 2mm, and analyzed for pH (DIN ISO 10390 (1997) in a 0.0l m CaCl2 solution with a CG 837-pH-electrode of SCHOTT), for the CEC (DIN 19684 (1977) using a ICP OES 138 of Jobin Yvon Ltd), and for Corg content (DIN ISO 10694 (1994)). These data were published in the diploma thesis of Jens Wünnenberg. Additionally the soil samples were analyzed for soil texture (Dr. S. Koszinski) and hydrological parameters (Dr. H. Gerke), these data are available by Dr. S. Koszinski. The soil samples collected in 1997 are archived in H10 at the basement. In 2004 und 2004 additional soil samples were collected (Dr. Gerke, Dr. Koszinskiy) these soil samples were archived as well (Bodenarchiv PB1).
DOI: 10.5281/zenodo.8044431
title: Dataset for: Thread-based microfluidic sensor for lithium monitoring in saliva

description: Dataset for: Thread-based microfluidic sensor for lithium monitoring in saliva, Talanta 253, 2023, 124094. Readme files contains necessary metadata. In data file, the following data associated with publication can be found: plasticizer type optimization, selectivity study, calibration curves, TOPO concentration optimization and kinetics data
description: This work was founded by Spanish "Ministerio de Economía y Competitividad" (Projects PID2019-103938RB-I00) and Junta de Andalucía (Projects B-FQM-243-UGR18 and P18-RT-2961). The projects were partially supported by European Regional Development Funds (ERDF). These investigations were also supported by Polish National Science Centre (Project PRELUDIUM no. 2021/41/N/ST4/00299).
DOI: 10.5281/zenodo.8044430
title: Dataset for: Thread-based microfluidic sensor for lithium monitoring in saliva

description: Dataset for: Thread-based microfluidic sensor for lithium monitoring in saliva, Talanta 253, 2023, 124094. Readme files contains necessary metadata. In data file, the following data associated with publication can be found: plasticizer type optimization, selectivity study, calibration curves, TOPO concentration optimization and kinetics data
description: This work was founded by Spanish "Ministerio de Economía y Competitividad" (Projects PID2019-103938RB-I00) and Junta de Andalucía (Projects B-FQM-243-UGR18 and P18-RT-2961). The projects were partially supported by European Regional Development Funds (ERDF). These investigations were also supported by Polish National Science Centre (Project PRELUDIUM no. 2021/41/N/ST4/00299).
DOI: 10.5281/zenodo.3976387
title: Experimental data for "Cohesional slip on a plate subduction boundary during a large earthquake"

description: This deposit contains raw data used for the study reported in the paper "Cohesional slip on a plate subduction boundary during a large earthquake".
DOI: 10.5281/zenodo.3976386
title: Experimental data for "Cohesional slip on a plate subduction boundary during a large earthquake"

description: This deposit contains raw data used for the study reported in the paper "Cohesional slip on a plate subduction boundary during a large earthquake".
DOI: 10.6073/pasta/c984ad330de1cec44f3f3182ea7bdb93
title: SONGS Mitigation Monitoring: Wetland Process Study - Irrigation, Decompaction, Amendment, Planting and Seeding Experiment Vegetation Cover

description: These data describe estimates of the percent cover of marsh plants in experimental plots designed to evaluate the effectiveness of various soil treatments on increasing vegetation cover at the San Dieguito Wetlands (Del Mar, California). Plots established between 1.61 – 2.1 m MLLW were manipulated to test the effects of irrigation, decompaction, soil amendments, and planting versus seeding, whereas plots between 1.6 – 1.7 m MLLW tested the effects of planting versus seeding alone. Data collection was conducted from 2020 to 2022. During each survey, species of marsh plants were identified and recorded under 98 uniformly spaced points within 4.5 m2 quadrats in each plot.
DOI: 10.6084/m9.figshare.21067292
title: Hot air drying of red beet: Process and product quality monitoring by digital images and near infrared spectroscopy

description: The use of nondestructive techniques that can guarantee <i>in situ</i> monitoring of the quality of food products during drying processes can promote improvements in industrial processes. In this context, digital imaging and near infrared spectroscopy can play an important role. Red beet moisture content, betalain content, shrinkage, and color were measured during drying. The digital images showed changes in color, which intensified with increasing temperature and correlated with betalain content through multivariate linear regression (R<sup>2</sup> of 0.90). In addition, sample shrinkage was identified by digital images. The volumetric shrinkage increased proportionally to the drying air temperature, with a shrinkage of 85.4 ± 0.3% at 70 °C. Spectral data were obtained by a low-cost portable near infrared spectrometer. Partial least square regression was used to predict the product moisture content (RP2=0.89;RMSEP=0.79%) and total betalain content (RP2=0.79;RMSEP=0.30mggd.b.) during drying. These tools can be used for the <i>in situ</i> control of red beet drying.
DOI: 10.6084/m9.figshare.21067292.v1
title: Hot air drying of red beet: Process and product quality monitoring by digital images and near infrared spectroscopy

description: The use of nondestructive techniques that can guarantee <i>in situ</i> monitoring of the quality of food products during drying processes can promote improvements in industrial processes. In this context, digital imaging and near infrared spectroscopy can play an important role. Red beet moisture content, betalain content, shrinkage, and color were measured during drying. The digital images showed changes in color, which intensified with increasing temperature and correlated with betalain content through multivariate linear regression (R<sup>2</sup> of 0.90). In addition, sample shrinkage was identified by digital images. The volumetric shrinkage increased proportionally to the drying air temperature, with a shrinkage of 85.4 ± 0.3% at 70 °C. Spectral data were obtained by a low-cost portable near infrared spectrometer. Partial least square regression was used to predict the product moisture content (RP2=0.89;RMSEP=0.79%) and total betalain content (RP2=0.79;RMSEP=0.30mggd.b.) during drying. These tools can be used for the <i>in situ</i> control of red beet drying.
DOI: 10.6084/m9.figshare.16867163
title: Do Pharaohs’ cattle still graze the Nile Valley? Genetic characterization of the Egyptian Baladi cattle breed

description: Egyptian Baladi cattle is one of the few native taurine breeds which remain in the original domestication area of <i>Bos taurus</i>, the Nile Valley (Upper Egypt). Apart from its evolutive relevance, the breed is well-adapted and integrated into the traditional family farming systems, with great potentialities for local sustainable rural development. The diversity and structure of the Baladi population were assessed using 28 genetic microsatellite markers. Within and between-breeds diversity, its relations with other cattle breeds, and an inference on its origin and evolution, were analyzed. Results reported high levels of diversity, with an average number of alleles (Na) of 11.39, observed heterozygosity (Ho) of 0.68, and expected heterozygosity (He) of 0.75. The studied population was in Hardy-Weinberg disequilibrium, which could be ascribed to its internal structure. The comparison between breeds using factorial correspondence analysis, Reynolds genetic distance evaluation, and genetic structure analysis suggested slight influences of <i>Bos indicus</i>. Upper Egypt’s rural communities have preserved the Baladi cattle breed, protecting this historical and biological heritage against the constant and indiscriminate introduction of exotic genetic resources along the history of development of the breed. Developing and implementing conservation and breeding programs is crucial for the preservation and improvement of the breed.HIGHLIGHTSBaladi cattle breed is a well-defined and highly diverse breed.Higher diversity levels are found in northern and central governorates.A clear geographical cluster is formed around the Nile Delta.Baladi cattle may be reminiscent of the ancient ‘pharaoh’ cattle.Assiut’s population acted as the most ancestral population nucleus. Baladi cattle breed is a well-defined and highly diverse breed. Higher diversity levels are found in northern and central governorates. A clear geographical cluster is formed around the Nile Delta. Baladi cattle may be reminiscent of the ancient ‘pharaoh’ cattle. Assiut’s population acted as the most ancestral population nucleus.
DOI: 10.6084/m9.figshare.16867163.v1
title: Do Pharaohs’ cattle still graze the Nile Valley? Genetic characterization of the Egyptian Baladi cattle breed

description: Egyptian Baladi cattle is one of the few native taurine breeds which remain in the original domestication area of <i>Bos taurus</i>, the Nile Valley (Upper Egypt). Apart from its evolutive relevance, the breed is well-adapted and integrated into the traditional family farming systems, with great potentialities for local sustainable rural development. The diversity and structure of the Baladi population were assessed using 28 genetic microsatellite markers. Within and between-breeds diversity, its relations with other cattle breeds, and an inference on its origin and evolution, were analyzed. Results reported high levels of diversity, with an average number of alleles (Na) of 11.39, observed heterozygosity (Ho) of 0.68, and expected heterozygosity (He) of 0.75. The studied population was in Hardy-Weinberg disequilibrium, which could be ascribed to its internal structure. The comparison between breeds using factorial correspondence analysis, Reynolds genetic distance evaluation, and genetic structure analysis suggested slight influences of <i>Bos indicus</i>. Upper Egypt’s rural communities have preserved the Baladi cattle breed, protecting this historical and biological heritage against the constant and indiscriminate introduction of exotic genetic resources along the history of development of the breed. Developing and implementing conservation and breeding programs is crucial for the preservation and improvement of the breed.HIGHLIGHTSBaladi cattle breed is a well-defined and highly diverse breed.Higher diversity levels are found in northern and central governorates.A clear geographical cluster is formed around the Nile Delta.Baladi cattle may be reminiscent of the ancient ‘pharaoh’ cattle.Assiut’s population acted as the most ancestral population nucleus. Baladi cattle breed is a well-defined and highly diverse breed. Higher diversity levels are found in northern and central governorates. A clear geographical cluster is formed around the Nile Delta. Baladi cattle may be reminiscent of the ancient ‘pharaoh’ cattle. Assiut’s population acted as the most ancestral population nucleus.
DOI: 10.6084/m9.figshare.16663264
title: The distribution of a missense mutation in <i>SDK1</i> gene across native Chinese breeds

description: Sidekick cell adhesion molecule 1 (<i>SDK1</i>) gene belonging to the immunoglobulin superfamily (IgSF) is reported to be associated with disease resistance. A novel missense mutation (XM_015469413.1: c.2678 A &gt; G: p. Asp893Gly) in bovine <i>SDK1</i> gene was observed in the Bovine Genome Variation Database (BGVD). The purpose of the current study was to determine the allelic frequency distribution of XM_015469413.1: c.2678 A &gt; G: p. Asp893Gly and analyze its association with disease resistance in native Chinese cattle. Here, we explored the allele frequency of the missense mutation (M_015469413.1: c.2678 A &gt; G: p. Asp893Gly) in 542 individuals from 27 Chinese indigenous cattle breeds using PCR and DNA sequencing methods. The frequency of the mutant allele (G) gradually decreased from the southern cattle groups to the northern cattle groups, whereas the frequency of the wild-type allele A showed an opposite pattern, consistent with the distribution of indicine and taurine cattle in China. Thus, our results proved that the bovine <i>SDK1</i> gene might be candidate genes associated with disease resistance in Chinese cattle.
DOI: 10.6084/m9.figshare.16663264.v1
title: The distribution of a missense mutation in <i>SDK1</i> gene across native Chinese breeds

description: Sidekick cell adhesion molecule 1 (<i>SDK1</i>) gene belonging to the immunoglobulin superfamily (IgSF) is reported to be associated with disease resistance. A novel missense mutation (XM_015469413.1: c.2678 A &gt; G: p. Asp893Gly) in bovine <i>SDK1</i> gene was observed in the Bovine Genome Variation Database (BGVD). The purpose of the current study was to determine the allelic frequency distribution of XM_015469413.1: c.2678 A &gt; G: p. Asp893Gly and analyze its association with disease resistance in native Chinese cattle. Here, we explored the allele frequency of the missense mutation (M_015469413.1: c.2678 A &gt; G: p. Asp893Gly) in 542 individuals from 27 Chinese indigenous cattle breeds using PCR and DNA sequencing methods. The frequency of the mutant allele (G) gradually decreased from the southern cattle groups to the northern cattle groups, whereas the frequency of the wild-type allele A showed an opposite pattern, consistent with the distribution of indicine and taurine cattle in China. Thus, our results proved that the bovine <i>SDK1</i> gene might be candidate genes associated with disease resistance in Chinese cattle.
DOI: 10.7944/p9khrjkw
title: Sea Duck Key Habitat Sites Atlas
DOI: 10.25919/5waj-9c34
title: Parkes observations for project P1194 semester 2023APRS_10

description: Among nearly 2000 unidentified gamma-ray sources detected with the Fermi Gamma Ray Space Telescope, there are potentially many pulsars. The ultra-wide frequency coverage will enable us to detect MSPs with steep spectrum and avoid difficulties caused by interstellar scintillation and dispersive and scattering smearing. We propose to revisit highly ranked pulsar candidates that remain unidentified. Such a pilot survey will help us designing future searches of the coming 4FGL gamma-ray source catalog using the UWL. We select 11 targets and request 12 hour time in total.
DOI: 10.25422/azu.data.21642077
title: Data for "Moonquake-Triggered Mass Wasting Processes on Icy Worlds"

description: Data for "Moonquake-Triggered Mass Wasting Processes on Icy Worlds" is a collection of datasets used in the associated publication. Detailed "README" files in .rtf and .pdf formats are included. <br> <em>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</em>
DOI: 10.25422/azu.data.21642077.v1
title: Data for "Moonquake-Triggered Mass Wasting Processes on Icy Worlds"

description: Data for "Moonquake-Triggered Mass Wasting Processes on Icy Worlds" is a collection of datasets used in the associated publication. Detailed "README" files in .rtf and .pdf formats are included. <br> <em>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</em>
DOI: 10.25345/c52z1305t
title: MassIVE MSV000092069 - Plasma glycoproteomic biomarkers identify metastatic melanoma patients with reduced clinical benefit from checkpoint inhibitor therapy
title: The clinical success of immune-checkpoint inhibitors (ICI) in both resected and metastatic melanoma has confirmed the validity of therapeutic strategies that boost the immune system to counteract cancer. However, half of patients with metastatic disease treated with even the most aggressive regimen do not derive durable clinical benefit. Thus, there is a critical need for predictive biomarkers that can identify individuals who are unlikely to benefit with high accuracy, so that these patients may be spared the toxicity of treatment without the likely benefit of response. Ideally, such an assay would have a fast turnaround time and minimal invasiveness. Here, we utilize a novel platform that combines mass spectrometry with an artificial intelligence-based data processing engine to interrogate the blood glycoproteome in melanoma patients before receiving ICI therapy. We identify 143 biomarkers that demonstrate a difference in expression between the patients who died within six months of starting ICI treatment and those who remained progression-free for three years. We then develop a glycoproteomic classifier that predicts benefit of immunotherapy (HR=2.7; p=0.026) and achieves a significant separation of patients in an independent cohort (HR=5.6; p=0.027). To understand how circulating glycoproteins may affect efficacy of treatment, we analyze the differences in glycosylation structure and discover a fucosylation signature in patients with shorter overall survival (OS). We then develop a fucosylation-based model that effectively stratifies patients (HR=3.5; p=0.0066). Together, our data demonstrate the utility of plasma glycoproteomics for biomarker discovery and prediction of ICI benefit in patients with metastatic melanoma and suggest that protein fucosylation may be a determinant of anti-tumor immunity.
DOI: 10.25345/c5z60cc17
title: MassIVE MSV000092070 - Multiple E3 ligases control tankyrase stability and function
title: Tankyrase 1 and 2 are ADP-ribosyltransferases that use NAD+ as a substrate to catalyze polyADP-Ribose (PAR) onto themselves and their protein binding partners. Tankyrases have diverse cellular functions, ranging from resolution of telomere cohesion to activation of the WNT/beta-catenin signaling pathway. Robust and specific small molecule tankyrase inhibitors have been developed and are being investigated for cancer therapies. Tankyrase is regulated by the PAR-binding E3 ligase RNF146, which promotes K48-linked polyubiquitylation and proteasomal degradation of PARylated tankyrases and their PARylated partners. We have identified a novel interaction between tankyrase and a distinct class of E3 ligases: the RING-UIM (Ubiquitin-Interacting Motif) family. We show that RING-UIM E3 ligases (specifically RNF114 and RNF166) bind monoubiquitylated tankyrase to promote K11-linked diubiquitylation. This modification competes with RNF146-mediated K48-linked polyubiquitylation and degradation, leading to stabilization of tankyrase and to a subset of its binding partners, including Angiomotin, a protein that functions in cancer signaling pathways. Moreover, we show that there are multiple PAR-binding E3 ligases (in addition to RNF146) that promote ubiquitylation of tankyrase and induce stabilization or degradation. Discovery of this novel K11 ubiquitylation of tankyrase that opposes K48-mediated degradation along with identification of multiple PAR-binding E3 ligases that ubiquitylate tankyrase, provide new insights into mechanisms of tankyrase regulation and may offer new uses for tankyrase inhibitors in cancer therapy. The mass spectrometry raw files of the affinity purifications that lead to the discovery of the E3 ligases are deposited here.
DOI: 10.5063/f1xg9pmd
title: Seventeen Seventy, QLD, Australia; 16s raw sequencing data; microbiological assemblages; supplementary environmental data appendix; August 2019

description: Uploaded here is the raw 16s sequencing data (fastq) as well as an appendix of environmental data sets for the study "Methanogens limited to lower rhizosphere and to an atypical salt marsh niche along a pristine intertidal mangrove continuum".In this study, we characterize microbial communities related to the methane cycle in a pristine intertidal mangrove continuum located at Seventeen Seventy, QLD, Australia. Microbiological and environmental samples were extracted from the mangrove sediment at 5 sites along the continuum and at 3 depths (up to 60cm) per site.For further information refer to the manuscript (Link TBA once published).
DOI: 10.5281/zenodo.6299295
title: Data on flower-pollinator interactions in inflorescences of Tillandsia stricta (Bromeliaceae) in the Atlantic Forest. Rio de janeiro Brazil.

description: Study data on the functional ecology of pollinators in the Atlantic Forest. Rio de janeiro Brazil.
DOI: 10.15468/dl.3u6ssx
title: Occurrence Download

description: A dataset containing 1033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Jynx torquilla Linnaeus, 1758",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 1033 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047611-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hp61wv
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schefflera angiensis Gibbs"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033791-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4m8tx6
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tamandua tetradactyla (Linnaeus, 1758)"
 ]
}

 The dataset includes 142 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031977-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10988947
title: RepoFromPaper Comparison with Bidir Method

description: These are the results of a comparison of link extraction between Bidir method and RepoFromPaper, applied on 150 research papers from the csSe section in Arxiv.org from the year 2023.
DOI: 10.5281/zenodo.10988946
title: RepoFromPaper Comparison with Bidir Method

description: These are the results of a comparison of link extraction between Bidir method and RepoFromPaper, applied on 150 research papers from the csSe section in Arxiv.org from the year 2023.
DOI: 10.15468/dl.vj2k9h
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Megachilidae"
 ]
}

 The dataset includes 628 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056440-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.