cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/kvy-ddd-b7j
title: Campanula collina Sims

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/fvx-e00-5vv
title: Campanula bononiensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7jj-v9d-d5m
title: Campanula bononiensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xzd-bfl-mpm
title: Campanula formanekiana Degen & Dörfl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mq3hz
title: CCDC 2434321: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/gt3-7s4-fza
title: Campanula formanekiana Degen & Dörfl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mlb-ega-3tk
title: Campanula foliosa Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mq3j0
title: CCDC 2434322: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mq3k1
title: CCDC 2434323: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/cbz-5gd-tfw
title: Campanula lingulata Waldst. & Kit.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vhx-pjw-ngh
title: Campanula saxifraga subsp. aucheri (A.DC.) Ogan.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mq3l2
title: CCDC 2434324: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15131/shef.data.27143238
title: DNA knots, catenanes, and replication intermediates via high-resolution AFM

description: This repository contains the raw and processed atomic force microscopy image data for the journal paper titled; "Under or Over? Tracing Complex DNA Structures with High Resolution Atomic Force Microscopy" (bioRxiv) or "Quantifting complexity in DNA Structures with High Resolution Atomic Force Microscopy" Nature Communications, which uses a new automated computational methods to trace complex knotted, catenated, and theta-curve DNA topologies provided by the <i>E.coli</i> Xer recombination system, and stalled replication intermediates from <i>Xenopus</i> egg extracts.The raw and processed image files can be found for each dataset (knots and catenanes, and replication intermediates) within the "AFM data" folder.The outputs from the TopoStats software can be found in the "AFM analysis" folders.The analysis scripts used to plot graphs from outputs of the TopoStats software are found in "Analysis scripts.The topology of DNA plays a crucial role in the regulation of cellular processes and genome stability. Despite its significance, DNA topology remains challenging to determine due to the length and conformational complexity of individual topologically constrained DNA molecules. We demonstrate unparalleled resolution of complex DNA topologies using Atomic Force Microscopy (AFM) in aqueous conditions. We present a new high-throughput automated pipeline to determine DNA topology from raw AFM images, using deep-learning methods to trace the backbone of individual DNA molecules and identify crossing points. Our pipeline efficiently determines which segment passes over which, including the handling of challenging crossings, where the path of each molecule may be harder to resolve. We demonstrate the wider applicability of our tracing method by determining the structure of stalled replication intermediates from Xenopus egg extracts, including theta structures and late replication products. By developing new methodologies to accurately trace the DNA path through every crossing, we determine the topology of plasmids, knots and catenanes from the E. coli Xer recombination system. In doing so we uncover a recurrent depositional effect and reveal its origins using coarse-grained simulations. Our approach is broadly applicable to a range of nucleic acid structures, including those which interact with proteins, and opens avenues for understanding fundamental biological processes which are regulated by or affect DNA topology.
DOI: 10.15131/shef.data.27143238.v1
title: DNA knots, catenanes, and replication intermediates via high-resolution AFM

description: This repository contains the raw and processed atomic force microscopy image data for the journal paper titled; "Under or Over? Tracing Complex DNA Structures with High Resolution Atomic Force Microscopy" (bioRxiv) or "Quantifting complexity in DNA Structures with High Resolution Atomic Force Microscopy" Nature Communications, which uses a new automated computational methods to trace complex knotted, catenated, and theta-curve DNA topologies provided by the <i>E.coli</i> Xer recombination system, and stalled replication intermediates from <i>Xenopus</i> egg extracts.The raw and processed image files can be found for each dataset (knots and catenanes, and replication intermediates) within the "AFM data" folder.The outputs from the TopoStats software can be found in the "AFM analysis" folders.The analysis scripts used to plot graphs from outputs of the TopoStats software are found in "Analysis scripts.The topology of DNA plays a crucial role in the regulation of cellular processes and genome stability. Despite its significance, DNA topology remains challenging to determine due to the length and conformational complexity of individual topologically constrained DNA molecules. We demonstrate unparalleled resolution of complex DNA topologies using Atomic Force Microscopy (AFM) in aqueous conditions. We present a new high-throughput automated pipeline to determine DNA topology from raw AFM images, using deep-learning methods to trace the backbone of individual DNA molecules and identify crossing points. Our pipeline efficiently determines which segment passes over which, including the handling of challenging crossings, where the path of each molecule may be harder to resolve. We demonstrate the wider applicability of our tracing method by determining the structure of stalled replication intermediates from Xenopus egg extracts, including theta structures and late replication products. By developing new methodologies to accurately trace the DNA path through every crossing, we determine the topology of plasmids, knots and catenanes from the E. coli Xer recombination system. In doing so we uncover a recurrent depositional effect and reveal its origins using coarse-grained simulations. Our approach is broadly applicable to a range of nucleic acid structures, including those which interact with proteins, and opens avenues for understanding fundamental biological processes which are regulated by or affect DNA topology.
DOI: 10.26131/irsa62
title: HERschel Inventory of The Agents of Galaxy Evolution (HERITAGE) LMC SPIRE 250 micron Catalog

description: The HERschel Inventory of The Agents of Galaxy Evolution (HERITAGE) open time key program mapped the Large Magellanic Cloud (LMC) and Small Magellanic Cloud (SMC) at 100, 160, 250, 350, and 500 microns using Herschel's PACS and SPIRE instruments. The overriding science goal of HERITAGE is to study the life cycle of matter as traced by dust in the LMC and SMC.

This dataset or service is made available by the Infrared Science Archive (IRSA) at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.3535/h1s-r9e-76k
title: Campanula alpina Jacq.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j4n-dhm-bee
title: Campanula bononiensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mq3m3
title: CCDC 2434325: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mq3n4
title: CCDC 2434326: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/83a-z7d-7n4
title: Campanula glomerata subsp. hispida (Witasek) Hayek

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qr1-hmh-f1d
title: Campanula andrewsii A.DC.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mq3p5
title: CCDC 2434327: Experimental Crystal Structure Determination

description: Related Article: Patrick W. Antoni, Annika Behnke, Christopher Golz, Max M. Hansmann|2025|J.Org.Chem.|90|9108|doi:10.1021/acs.joc.5c00880
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/377-3py-dlv
title: Campanula foliosa Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/spf-xq8-cmr
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mxh79
title: CCDC 2440451: Experimental Crystal Structure Determination

description: Related Article: Víctor Rubio-Pisabarro, Jonathan Álvarez-García, María Magdalena Cid|2025|Org.Lett.|27|7164|doi:10.1021/acs.orglett.5c02075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/dan-yyt-x09
title: Campanula foliosa Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2mxh8b
title: CCDC 2440452: Experimental Crystal Structure Determination

description: Related Article: Víctor Rubio-Pisabarro, Jonathan Álvarez-García, María Magdalena Cid|2025|Org.Lett.|27|7164|doi:10.1021/acs.orglett.5c02075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxhdg
title: CCDC 2440456: Experimental Crystal Structure Determination

description: Related Article: Víctor Rubio-Pisabarro, Jonathan Álvarez-García, María Magdalena Cid|2025|Org.Lett.|27|7164|doi:10.1021/acs.orglett.5c02075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/4jj-chy-tx3
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cgx-46m-760
title: Campanula foliosa Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qck-7bk-0f4
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/wx0-916-20k
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/aqa-d9j-heb
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/38c-k6f-fmk
title: Campanula cervicaria L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hgy-944-lj2
title: Campanula incurva Aucher ex A.DC.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n062z
title: CCDC 2443050: Experimental Crystal Structure Determination

description: Related Article: Mingren Fan, Xiu’e Jiang, Jianquan Jing, Siwei Song, Yi Wang, Qinghua Zhang|2025|J.Org.Chem.|90|9170|doi:10.1021/acs.joc.5c01041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/l97-jx7-9lk
title: Campanula foliosa Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/s4y-ddd-clz
title: Campanula goulimyi Turrill

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n0630
title: CCDC 2443051: Experimental Crystal Structure Determination

description: Related Article: Mingren Fan, Xiu’e Jiang, Jianquan Jing, Siwei Song, Yi Wang, Qinghua Zhang|2025|J.Org.Chem.|90|9170|doi:10.1021/acs.joc.5c01041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/0tb-zjs-92r
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nkb-9vg-e0w
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n0641
title: CCDC 2443052: Experimental Crystal Structure Determination

description: Related Article: Mingren Fan, Xiu’e Jiang, Jianquan Jing, Siwei Song, Yi Wang, Qinghua Zhang|2025|J.Org.Chem.|90|9170|doi:10.1021/acs.joc.5c01041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.26131/irsa63
title: HERschel Inventory of The Agents of Galaxy Evolution (HERITAGE) LMC PACS 100 micron Catalog

description: The HERschel Inventory of The Agents of Galaxy Evolution (HERITAGE) open time key program mapped the Large Magellanic Cloud (LMC) and Small Magellanic Cloud (SMC) at 100, 160, 250, 350, and 500 microns using Herschel's PACS and SPIRE instruments. The overriding science goal of HERITAGE is to study the life cycle of matter as traced by dust in the LMC and SMC.

This dataset or service is made available by the Infrared Science Archive (IRSA) at IPAC, which is operated by the California Institute of Technology under contract with the National Aeronautics and Space Administration.
DOI: 10.3535/a87-ld9-25r
title: Campanula bononiensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/h09-kjt-ymq
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n0652
title: CCDC 2443053: Experimental Crystal Structure Determination

description: Related Article: Mingren Fan, Xiu’e Jiang, Jianquan Jing, Siwei Song, Yi Wang, Qinghua Zhang|2025|J.Org.Chem.|90|9170|doi:10.1021/acs.joc.5c01041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/jrk-7dl-99j
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n0663
title: CCDC 2443054: Experimental Crystal Structure Determination

description: Related Article: Mingren Fan, Xiu’e Jiang, Jianquan Jing, Siwei Song, Yi Wang, Qinghua Zhang|2025|J.Org.Chem.|90|9170|doi:10.1021/acs.joc.5c01041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/j4q-tza-pfz
title: Campanula fritschii Witasek

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mr2-xnz-3t4
title: Campanula fritschii Witasek

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n0674
title: CCDC 2443055: Experimental Crystal Structure Determination

description: Related Article: Mingren Fan, Xiu’e Jiang, Jianquan Jing, Siwei Song, Yi Wang, Qinghua Zhang|2025|J.Org.Chem.|90|9170|doi:10.1021/acs.joc.5c01041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/dnc-6jc-16w
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/x3b-mjp-xhm
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/frk-cc9-me6
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2n3j9m
title: CCDC 2446250: Experimental Crystal Structure Determination

description: Related Article: Brian S. Daniels, Bryan G. Blackburn, Silas J. Scribner, Vy M. Dong|2025|J.Am.Chem.Soc.|147|21339|doi:10.1021/jacs.5c06639
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/13f-qgm-zny
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7mg-an6-4f9
title: Campanula hypopolia Trautv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/t2m-a6x-t0r
title: Campanula hypopolia Trautv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/b8h-psk-xhq
title: Campanula bononiensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kh8-240-pwt
title: Campanula heterophylla L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7m0-0wg-t7c
title: Campanula glomerata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mqa-sm3-l5h
title: Campanula alpina Jacq.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.