cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15028110
title: NCES IPEDS Survey Data 1980-2023

description: U.S. federal government educational institution data from 1984-2023 and 1980. Contents are all IPEDS (Integrated Postsecondary Education Data System) data files from the U.S. NCES (National Center for Education Statistics) available on their Data Center website: https://nces.ed.gov/ipeds/datacenter/Default.aspx?gotoReportId=7&fromIpeds=true

 

Files are organized by year within the tarball and each dataset is a zip archive. The datasets come in a variety of formats (CSV, SPSS. SAS, STATA) and also have a data dictionary included. The variety of data available from year to year varies according to various changes in IPEDS surveys over the years.

 

This data set is also available in ICPSR's DataLumous repository: https://www.datalumos.org/datalumos/project/218981/version/V1/view
DOI: 10.5281/zenodo.15028111
title: NCES IPEDS Survey Data 1980-2023

description: U.S. federal government educational institution data from 1984-2023 and 1980. Contents are all IPEDS (Integrated Postsecondary Education Data System) data files from the U.S. NCES (National Center for Education Statistics) available on their Data Center website: https://nces.ed.gov/ipeds/datacenter/Default.aspx?gotoReportId=7&fromIpeds=true

 

Files are organized by year within the tarball and each dataset is a zip archive. The datasets come in a variety of formats (CSV, SPSS. SAS, STATA) and also have a data dictionary included. The variety of data available from year to year varies according to various changes in IPEDS surveys over the years.

 

This data set is also available in ICPSR's DataLumous repository: https://www.datalumos.org/datalumos/project/218981/version/V1/view
DOI: 10.15468/dl.7ddzwz
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.21918 -1.48457,-61.78082 -1.48457,-61.78082 9.48457,-89.21918 9.48457,-89.21918 -1.48457))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bauhinia geniculata Wunderlin"
 ]
}

 The dataset's 1 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009210-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3r3sd6
title: Occurrence Download

description: A dataset containing 81125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.33554 20.96494,-105.35055 20.96699,-105.36318 20.95197,-105.36079 20.9431,-105.35055 20.93355,-105.34203 20.92673,-105.32906 20.92195,-105.3178 20.92025,-105.29972 20.91683,-105.28948 20.90967,-105.28539 20.90592,-105.279 20.88986,-105.26268 20.88079,-105.2391 20.88895,-105.23942 20.90101,-105.2398 20.91526,-105.2441 20.92751,-105.24374 20.93931,-105.23909 20.95327,-105.23158 20.96364,-105.21405 20.97294,-105.19795 20.97545,-105.18257 20.99119,-105.16146 21.00013,-105.15252 21.00908,-105.15395 21.0216,-105.17273 21.03265,-105.18924 21.02494,-105.21718 21.01973,-105.23915 21.00437,-105.25022 21.01579,-105.24255 21.04527,-105.22198 21.07195,-105.2314 21.07359,-105.23343 21.06978,-105.2345 21.0662,-105.23645 21.06061,-105.23992 21.05486,-105.24444 21.04735,-105.29562 20.99834,-105.31279 21.0055,-105.32204 20.99437,-105.3199 20.98078,-105.33554 20.96494))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 81125 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009195-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjzea9
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdita turgiceps Timberlake, 1954"
 ]
}

 The dataset includes 856 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009217-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y9xvkd
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pediobius facialis (Giraud, 1863)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 41 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009218-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15028297
title: Main News Evaluation Key
DOI: 10.5281/zenodo.15028298
title: Main News Evaluation Key
DOI: 10.6084/m9.figshare.26305315
title: Bennett et al. 2025 J Ecol PSF Data and code

description: Plant-soil feedback (PSF) can both positively and negatively affect plant populations. Diverse communities should dilute pathogens and mitigate negative PSF, whereas plant dominance should have the opposite effect. It is unclear, however, whether increased species and genetic diversity can have additive effects on pathogen dilution. Using soils from <i>Medicago sativa</i> production systems varying in dominance and diversity, we inoculated multiple species and cultivars to assess effects on PSF. We linked dominance and diversity to intra- and interspecific variation in PSF via changes in microbiome composition. Included data are the feature tables for each of the sequenced samples for bacteria (bact_meta_all.txt), fungi (fung.csv), oomycetes (oom.csv), and arbuscular mycorrhizal fungi (amf.csv). Also included is the code to generate the ordinations used in the paper (Correlations and Ordinations.R). The raw sequencing data has been deposited under BioProject accession PRJNA1125521 (https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1125521).We also include the raw biomass data from the growth chamber experiment (Final Bennett Awodele data shoot mass.csv), all the field data (all_field_data.txt), and the data used to construct the structural equation model (Bennett et al Plant and soil data alfalfa study.csv). The code used to compare PSF values among cultivars and species is contained in “Correlations and Ordinations.R”. The code for the structural equation model is included in a word document (Bennett SPSS AMS syntax code.docx). The full model output is included as “AMOS model output.xlsx”, as are the summarized direct (regression weights for graphing.csv) and indirect effects (indirect effects for graphing.csv) used to generate Figures 2 and 3. The code for generating these figures is located in “interspecific PSF SEM model graphs.R”.
DOI: 10.5517/ccdc.csd.cc2lsf72
title: CCDC 2406754: Experimental Crystal Structure Determination

description: Related Article: Lei Pan, Gele Teri, Cha-Hui Du, Zeng-Jie Xiao, Ji Liu, Pengcheng Zhuge, Pei-Guo Liu, Qiang-Qiang Jia, Zhi-Xu Zhang, Da-Wei Fu, Yi Zhang|2025|Cryst.Growth Des.|25|1597|doi:10.1021/acs.cgd.4c01693
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.8m879w
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdita turgiceps Timberlake, 1954"
 ]
}

 The dataset includes 856 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009221-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghhbp8
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pediobius furvus (Gahan, 1928)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009223-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28594292.v3
title: Cartan-∆ngular Gravity : une approche angulaire unifiée de la gravitation quantique et classique

description: Cartan-∆ngular Gravity (C∆G) propose une reformulation unifiée de la gravité où la torsion et la structuration gravitationnelle émergent directement d’une quantification angulaire minimale. Ce modèle s’appuie sur l’héritage d’Élie Cartan en intégrant naturellement la torsion dans la dynamique gravitationnelle, tout en incorporant une transition fluide entre les régimes classique et quantique grâce à un facteur d’échelle dynamique.

Cette approche permet :

Une unification cohérente de la gravité classique et quantique sans ajout de paramètres arbitraires.

Une relation directe entre la torsion, la courbure et la quantification angulaire.

Une validation expérimentale à travers les observations astrophysiques (lentilles gravitationnelles, QPOs, structure à grande échelle).


C∆G s’inscrit comme une extension naturelle de la géométrie cartanienne, révélant que la gravitation est une manifestation émergente des structures angulaires de l’espace-temps.<br>
DOI: 10.15468/dl.2cb2ku
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdita turgiceps Timberlake, 1954"
 ]
}

 The dataset includes 856 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009225-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqquf9
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epeolus pulchellus Cresson, 1865"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009228-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uk6tnr
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "TaxonKey is Appendicularia Fol, 1874"
 ]
}

 The dataset's 1 records were derived from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009220-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.seca3t
title: Occurrence Download

description: A dataset containing 512 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bobgunnia fistuloides (Harms) J.H.Kirkbr. & Wiersema"
 ]
}

 The dataset includes 512 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009229-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fcyqhj
title: Occurrence Download

description: A dataset listing the 30 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "TaxonKey is Thaliacea"
 ]
}

 The dataset's 30 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009222-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mnacm
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdita turgiceps Timberlake, 1954"
 ]
}

 The dataset includes 856 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009230-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3kfrn
title: Occurrence Download

description: A dataset containing 414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neoscapteriscus borellii (Giglio-Tos, 1894)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 414 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009232-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2af7db
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nomada flaviceps Cresson, 1865"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009233-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rg5eu
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Eryngium sparganophyllum Hemsl."
 ]
}

 The dataset includes 101 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009234-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14895132
title: Supporting Files for PyCPET - Computing Heterogeneous 3D Protein Electric Fields and Their Dynamics

description: Here are supporting files for the paper "PyCPET - Computing Heterogeneous 3D Protein Electric Fields and Their Dynamics"

There are three tar files, for each system demonstrated in this study. The folder structures are nearly identical among them; they each contain:



Benchmarks for radius and sample/step size convergence (PyCPET)

Parameters for molecular dynamics simulations (in the form of AMBER prmtop files)

Production run simulation files, at the sampling level of the field topology (once every 0.1ns)

Clustering results, with representative field frames (PyCPET)

For all PyCPET functions above, options.json files are given as examples of how to run cpet.py. Please stay up-to-date on any changes at https://github.com/pujanajmera/pycpet/tree/main to ensure the script is running correctly

Additionally, the Alcohol Dehydrogenase folder contains PCA results.
DOI: 10.5281/zenodo.14895133
title: Supporting Files for PyCPET - Computing Heterogeneous 3D Protein Electric Fields and Their Dynamics

description: Here are supporting files for the paper "PyCPET - Computing Heterogeneous 3D Protein Electric Fields and Their Dynamics"

There are three tar files, for each system demonstrated in this study. The folder structures are nearly identical among them; they each contain:



Benchmarks for radius and sample/step size convergence (PyCPET)

Parameters for molecular dynamics simulations (in the form of AMBER prmtop files)

Production run simulation files, at the sampling level of the field topology (once every 0.1ns)

Clustering results, with representative field frames (PyCPET)

For all PyCPET functions above, options.json files are given as examples of how to run cpet.py. Please stay up-to-date on any changes at https://github.com/pujanajmera/pycpet/tree/main to ensure the script is running correctly

Additionally, the Alcohol Dehydrogenase folder contains PCA results.
DOI: 10.5281/zenodo.15028365
title: Ciona tail regression_genotype_Ano5 (KH.C8.274)_video1 (part3)

description: Video that was collected using Ciona Tracker 2.0 as part of Liang et al 2025. Animals included in this video are Ano5 mutants used in CRISPR/Cas9 experiments addressing the role of Ano5 and Ano6 in Ciona sensory perception.
DOI: 10.5281/zenodo.15028366
title: Ciona tail regression_genotype_Ano5 (KH.C8.274)_video1 (part3)

description: Video that was collected using Ciona Tracker 2.0 as part of Liang et al 2025. Animals included in this video are Ano5 mutants used in CRISPR/Cas9 experiments addressing the role of Ano5 and Ano6 in Ciona sensory perception.
DOI: 10.15468/dl.8ujw5s
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdita turgiceps Timberlake, 1954"
 ]
}

 The dataset includes 856 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009235-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/es5gzs
title: Listado taxonómico de mamíferos con distribución en México

description: Esta lista reúne la información taxonómica y nomenclatural de las especies de mamíferos en México. Contiene un total de 3,593 registros, de los cuales 614 corresponden a especies y 824 a subespecies válidas clasificadas de acuerdo con las propuestas más reconocidas en el país, representando en conjunto 57 familias y 259 géneros. El arreglo taxonómico se basa en Wilson & Reeder (2011), Woodman (2018)
y Kitchener et al., (2017). El endemismo es con base en Ramírez-Pulido et al., (2014), Ceballos (2014) y Briones-Salas et al. (2016).
DOI: 10.15468/dl.k55m3r
title: Occurrence Download

description: A dataset containing 856 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdita turgiceps Timberlake, 1954"
 ]
}

 The dataset includes 856 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009237-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.4533045
title: Feb2021 reference datasets for Mitohelper

description: <strong>Reference datasets (Feb 2021 update with bug fixes) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Feb2021.tsv (668,366 records; Jan 2021 MitoFish release) mitofish.12S.Feb2021.tsv (37,314 records) mitofish.COI.Feb2021.tsv (224,712 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza
description: Fixed irregular column breaks in Jan 2021 reference dataset. No records added or removed compared to Jan 2021.
DOI: 10.5281/zenodo.7278153
title: Nov2022 reference datasets for Mitohelper

description: <strong>Reference datasets (Nov2022 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Nov2022.tsv (776,210 records) mitofish.12S.Nov2022.tsv (44,560 records) mitofish.12S.Nov2022_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.Nov2022.tsv (314,143 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
description: Major update: The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.Nov2022_NR.fasta
DOI: 10.5281/zenodo.7832692
title: Apr2023 reference datasets for Mitohelper

description: <strong>Reference datasets (Apr2023 update) for Mitohelper (<em>https://github.com/aomlomics/mitohelper</em>)</strong> Major update (Nov2022): The 12S rRNA gene sequence dataset is now filtered to only contain mitochondrial genomes annotated with 12S rRNA gene sequences. Sequences of the 12S rRNA gene are now extracted from complete mitochondrial genomes to construct a more gene-specific 12S rRNA dataset. 12S rRNA gene sequences in mitohelper's dataset are available for download as mitofish.12S.Feb2023_NR.fasta Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.Apr2023.tsv (802,392 records) mitofish.12S.Apr2023.tsv (47,312 records) mitofish.12S.Apr2023_NR.fasta (fasta file of 12S rRNA gene records) mitofish.COI.Apr2023.tsv (324,786 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite:<br> Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
DOI: 10.5281/zenodo.10126897
title: Nov2023 reference datasets for Mitohelper

description: Reference datasets (Nov2023 update) for Mitohelper (https://github.com/aomlomics/mitohelper)
Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline.
I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:

mitofish.all.Nov2023.tsv (833,874 records)
mitofish.12S.Nov2023.tsv (53,327 records)
mitofish.12S.Nov2023_NR.fasta (FASTA file of 12S rRNA gene records)
mitofish.COI.Nov2023.tsv (341,242 records)
II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:

12S-seqs-derep-uniq.qza
12S-tax-derep-uniq.qza
12S-16S-18S-seqs.qza
12S-16S-18S-tax.qza
If you use Mitohelper, please cite:Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10.  https://doi.org/10.1002/edn3.187