cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive101583.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101583.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093622.10fu
title: SH0093622.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive101584.20230509.8.1
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive101584.20251217.10
title: Arthrobacter sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0093623.10fu
title: SH0093623.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.khyfr7
title: Occurrence Download

description: A dataset containing 504 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus pannosa"
 ]
}

 The dataset includes 504 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004260-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x23q3c
title: Occurrence Download

description: A dataset containing 10291 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Spain, Portugal, Morocco)",
 "TaxonKey is Pleurodeles waltl"
 ]
}

 The dataset includes 10291 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004261-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15037867
title: HyperFusion_data

description: HyperFusion_data
DOI: 10.5281/zenodo.15037868
title: HyperFusion_data

description: HyperFusion_data
DOI: 10.15468/dl.v4fyf4
title: Occurrence Download

description: A dataset containing 246926 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vinca minor L."
 ]
}

 The dataset includes 246926 records from 1458 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012108-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzsywt
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((67.43842 29.42271,70.53635 28.06466,70.53635 24.77071,68.01929 22.82208,71.11721 15.1393,75.76411 12.50739,76.73221 19.02507,82.15358 20.84516,86.60686 22.10638,89.70478 23.17854,92.02823 25.6466,93.77082 23.35641,96.4815 27.89367,94.15806 29.59122,87.76858 29.92739,78.47479 35.77827,72.47256 35.30563,67.43842 29.42271))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sphaerotheca breviceps (Schneider, 1799)"
 ]
}

 The dataset includes 154 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012137-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60629/6v5y-7z16
title: Dataset from fieldwork/project Nature protection area Natura 2000 as a multispecies network of dependencies
title: Dane z badań w ramach projektu Obszar ochronny Natura 2000 jako wielogatunkowa sieć zależności

description: <p>The dataset consists of transcriptions of fieldwork/ethnographic interviews conducted by the project research team at Lake Niedzięgiel in the spring and summer of 2024.</p>
description: <p>participant observation, ethnographic interviews and conversations, ethnographic walks</p>
description: <p>Dane zebrane w trakcie pracy terenowej nad jeziorem Niedzięgiel (PG) przez zespół badawczy projektu &#34;Obszar ochronny Natura 2000 jako wielogatunkowa sieć zależności&#34; wiosną i latem 2024 roku</p>
description: <p>Wywiady etnograficzne, obserwacja uczestnicząca, spacery etnograficzne.</p><p>Uchwała Komisji Etycznej UAM ds. badań naukowych z udziałem ludzi nr 6/2022/2023 z dnia 28 lutego 2023 roku - pozytywna decyzja w sprawie projektu.</p>
DOI: 10.15468/dl.994vb8
title: Occurrence Download

description: A dataset containing 57540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Morus L."
 ]
}

 The dataset includes 57540 records from 966 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012062-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/3sk-053-lk7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/thl-027-lst
title: †Strophomenida Öpik, 1934

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p85-k0l-ll2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ygv-g8c-fw3
title: †Orthidae Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23498033.v1
title: Source data of the manuscript "Soliton pulse pairs at multiple colors in normal dispersion microresonators"

description: This is source data of the manuscript entitled " Soliton pulse pairs at multiple colors in normal dispersion microresonators".
DOI: 10.6084/m9.figshare.24747165.v6
title: <b>Yellow Fever in Ghana: Predicting Emergence and Ecology from Historical Outbreaks (Datasets)</b>

description: These files contain the data for the original article:Judson SD, Kenu E, Fuller T, Asiedu-Bekoe F, Biritwum-Nyarko A, Schroeder LF, Dowdy DW. Yellow fever in Ghana: Predicting emergence and ecology from historical outbreaks. <i>PLOS Global Public Health</i>. 2024; doi.org/10.1371/journal.pgph.0003337If using these data please cite the article above.Details on the ecological niche modeling methods are available in the S1 Appendix and R markdown file: YF_Ghana_ENM<b>Datasets:</b>Ghana YF Annual Cases 1910_2022-contains data on annual cases, deaths, and CFR from literature reviewGhana_YF_Occurrences-contains locations of laboratory confirmed occurrences of YF outbreaks in GhanaGhana_YF_Outbreaks_District_1910_2022-Includes data for outbreaks according to district<br><b>Data fields</b>Year= year cases occurred at that locationYear.start = year the overall outbreak startedMonth.start=month the outbreak startedYear.end = year the outbreak endedMonth.end = month the outbreak ended<br>Region= region where cases occurredDistrict = district where cases occurredLocation = specific location where cases occurred<br>Cases.reported = cases reportedDeaths.reported = deaths reportedcase.ref is the reference for the case numbersrefs= additional references<br>Cycle.suspected = suspected transmission cyclevaccination.reactive = reactive vaccination campaigns (1 = yes)Outbreak.origin = (1= outbreak started in this area)season.start = season during the month of outbreak origin<br>
DOI: 10.6084/m9.figshare.25289482.v1
title: <b>Vertebrate richness, diversity, and biomass along a recovery gradient in a lowland tropical forest</b>

description: Raw data and R code to reproduce the analyses in the manuscript: Grella et al. Vertebrate richness, diversity, and biomass along a recovery gradient in a lowland tropical forest<br>
DOI: 10.3535/bd1-z8t-nk6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c0w-36c-sf8
title: †Orthidae Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/537-5z3-bh5
title: †Strophomenida Öpik, 1934

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/er7-e2h-bj5
title: †Neobothriocidaris Paul, 1967

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22302994.v1
title: HybPiper_BLASTx extraction file from the respective Thladiantha-specific references

description: Initially, this gff file was processed by a python script (prepare_hybpiper_gff.py) to add the missing information of the locus name. This file was created by the HybPiper_BLASTx using the reference file. Further, it was used for comparison with Captus and SECAPR.
DOI: 10.6084/m9.figshare.3526274.v1
title: Supplement 1. WinBUGS code for the examples shown in the main article.

description: File List WinBUGS_code.txt Description WinBUGS code contains text that can be copied and pasted into WinBUGS to run the three examples presented in the article.
DOI: 10.6084/m9.figshare.4004274.v3
title: Robust Improper Maximum Likelihood: Tuning, Computation, and a Comparison With Other Methods for Robust Gaussian Clustering

description: The two main topics of this article are the introduction of the “optimally tuned robust improper maximum likelihood estimator” (OTRIMLE) for robust clustering based on the multivariate Gaussian model for clusters, and a comprehensive simulation study comparing the OTRIMLE to maximum likelihood in Gaussian mixtures with and without noise component, mixtures of <i>t</i>-distributions, and the TCLUST approach for trimmed clustering. The OTRIMLE uses an improper constant density for modeling outliers and noise. This can be chosen optimally so that the nonnoise part of the data looks as close to a Gaussian mixture as possible. Some deviation from Gaussianity can be traded in for lowering the estimated noise proportion. Covariance matrix constraints and computation of the OTRIMLE are also treated. In the simulation study, all methods are confronted with setups in which their model assumptions are not exactly fulfilled, and to evaluate the experiments in a standardized way by misclassification rates, a new model-based definition of “true clusters” is introduced that deviates from the usual identification of mixture components with clusters. In the study, every method turns out to be superior for one or more setups, but the OTRIMLE achieves the most satisfactory overall performance. The methods are also applied to two real datasets, one without and one with known “true” clusters. Supplementary materials for this article are available online.
DOI: 10.3535/e1n-aah-7nn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/vrj-gen-bks
title: †Cyclospiridae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.8003771.v2
title: Macadamia Transcriptome Assembly

description: Macadamia transcriptome assemblies from pooled leaf, stem, bud, root, floral and nut tissue. Using normalized cDNA libraries, we generated comprehensive RNA-Seq datasets using the Illumina NextSeq 500 platform. 78871 of macadamia unigenes respectively were generated and functionally annotated using a combination of de novo transcriptome assembly, redundancy reduction and Basic Local Alignment Search Tool (BLAST) searches to the Universal Protein Resource UniProtKB/Swiss-Prot database.
DOI: 10.3535/pjs-ke1-xzt
title: †Neobothriocidaris Paul, 1967

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.3693sz
title: Occurrence Download

description: A dataset containing 963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lepus saxatilis F.Cuvier, 1823"
 ]
}

 The dataset includes 963 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009835-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/59s-11a-glb
title: †Cyclospiridae Schuchert, 1913

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/86a-r9s-dds
title: †Christiania Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zag-1ff-xkr
title: †Orthoidea Woodward, 1852

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d251
title: Ex13R51 GFP-4 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.3535/f87-vd8-h8s
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jhl-0kj-lk1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22644591.v1
title: Vitamin D as a prognostic biomarker in COVID-19: single-center study and meta-analyses

description: Vitamin D was investigated as a prognostic biomarker in COVID-19, in relation to both disease susceptibility and outcomes in infected individuals. Patients admitted to the hospital with a confirmed COVID-19 diagnosis were included if they had a vitamin D measurement prior to hospitalization. Using age- and sex-matched controls, vitamin D levels were investigated for an association with COVID-19 related hospitalizations. Further, vitamin D levels were investigated for an association with 30-day mortality in hospitalized COVID-19 patients. Additionally, three meta-analyses were conducted, investigating the association of vitamin D with the following outcomes: Having a positive SARS-CoV-2 test, hospitalization with COVID-19, and mortality in COVID-19 patients. A total of 685 hospitalized COVID-19 patients were included in the single-center study. Compared to controls, they had higher vitamin D levels. Unadjusted analysis of these 685 cases found higher vitamin D levels associated with increased 30-day mortality. This association disappeared after adjusting for age. In the fully adjusted model, no association between vitamin D and 30-day mortality was found. The meta-analyses found significant associations between lower vitamin D and having a positive SARS-CoV-2 test, and mortality among hospital-admitted COVID-19 patients. The relationship between lower vitamin D and COVID-19 related hospital admissions trended towards being positive but was not statistically significant. Many factors seem to influence the associations between vitamin D and COVID-19 related outcomes. Consequently, we do not believe that vitamin D in and of itself is likely to be a clinically useful and widely applicable predictor for the susceptibility and severity of COVID-19 infections.
DOI: 10.25380/iastate.7800956.v3
title: Imaging of Unstained DNA Origami Triangles with Electron Microscopy

description: Imaging of scaffolded DNA and DNA origami nanostructures has been dominated by atomic force microscopy of samples immobilized on bulk substrates. Less commonly used for DNA imaging are electron microscopy techniques, which are typically carried out either after negative staining of DNA or by direct imaging using a bright field cryo-TEM. Here, direct imaging of unstained DNA origami nanostructures on thin electron-transparent substrates utilizing high angular annular dark field scanning transmission electron microscopy )(HAADFSTEM) is reported. This approach establishes a simple method for depositing and imaging intact DNA triangles with mass-thickness contrast, sufficient to measure the scaffold-to-scaffold distances and the length of the triangle’s seam. The signal-to-noise ratio (SNR) of the DNA supported on amorphous carbon as a function of the carbon thickness is measured on three types of commercially available TEM grids to analyze the image resolution. This allows for an edge detection of ~1 nm height DNA triangles on carbon substrates as thick as ~25 nm. Additional observations on the effect on SNR with the imaging modes are discussed. The effect of cation concentration used for pre-treating the grid surface on the image resolution is also explored. Our work presents proof-of-concept results demonstrating that electron microscopy can be utilized to resolve key elements of the DNA origami triangle, without staining or employing exceedingly complicated preparation protocols.<br>
DOI: 10.3535/hh4-zj3-md3
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pbk-ttg-esh
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0db-6wp-t4d
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28544021.v1
title: Structure of epitaxial heteromolecular bilayers probed by low-energy electron microscopy: Primary Data

description: Primary research data for publication:Pavel Procházka, Veronika Stará, Jakub Planer, Tomáš Skála, Jan Čechal: Structure of epitaxial heteromolecular bilayers probed by low-energy electron microscopy.
DOI: 10.6084/m9.figshare.5682619.v1
title: Fig 1 data

description: datasets for Fig 1:1. body weights across experiment2. glucose challenge3. area under the curve for glucose challenge4. water vs. HFCS consumption (by cage)<br>
DOI: 10.3535/33f-7ed-s2r
title: †Strophomenida Öpik, 1934

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zcc-avk-pc7
title: †Neobothriocidaris Paul, 1967

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/j9nr6735gy
title: Data for: Compact high-order stencils with optimal accuracy for numerical solutions of 2-D time-independent elasticity equations.

description: Addition to the paper
DOI: 10.3535/ndg-n5v-ef4
title: †Rhynchotrema Hall, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rx7-emv-d1t
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.15468/dl.y5z3dt
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Euphorbia milii Des Moul."
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009836-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/n06-xet-fjq
title: †Homotrypa Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xd3-q6j-e3x
title: †Homotrypa Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/n4p-mds-2q2
title: †Homotrypa Ulrich, 1882

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wxv-nnl-c9e
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t3c-jet-zlk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/w81-4y1-5mm
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h9z-gv8-yga
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hym-79l-jbe
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/17p-jxq-qj1
title: †Dicoelosia King, 1850

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/295-bpq-wge
title: †Isorthis Kozlowski, 1929

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26005156.v1
title: Phylogenetic reconstruction

description: Aligment and tree files for the phylogenetic reconstruction of PHADs
DOI: 10.6084/m9.figshare.28606970.v1
title: 800数据

description: 生物信息学数据集
DOI: 10.17632/pngct7c5pd
title: From relativistic time dilation to psychological time perception

description: Scripts to generate the results.
DOI: 10.3535/650-3vb-cs3
title: †Dicoelosia King, 1850

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.