cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/2199a82aedbd8e462ac9edafd915d0fc
title: BGPVC Plant species composition in the Belowground Plot Experiment at Konza Prairie

description: Two permanent plant composition plots were marked with conduit in each of the 64 plots. Canopy cover was recorded in a 5 m2circular area surrounding each of the plots.  At approximately 5-year intervals, coverage is assessed in late July, using visual estimates of cover by species, based on a modified Daubenmire scale. 
 
 
 In 1989, sampling was done once in early July after mowing using one 10 m2 plot placed randomly in the approximate center of each plot. In 1994, plant composition sampling was done in early June in the unmowed plots; sampling in the mowed plots occurred in August. In 1999, two permanent conduits were placed in each plot, and sampling was conducted in June, before mowing, and again in August using 5 m2 plot sizes. In 2005 and afterward, sampling was reduced to one time in late July. Sampling occurred once every five years until 2015. Plots have been sampled annually since 2016.
 
 
 Two of the long-term unburned plots in a wildfire in 1994 and 1995. Those plots and years of the fire are indicated on the linked plot map. The mowing treatment was discontinued after 2002 due to invasion of the mowed plots by old world bluestem grasses. Data users should check for exotic species impacts on specific mowed subplots prior to this. In addition, fertilization in all plots ceased in 2017 as part of recovery from chronic N enrichment experiment.
DOI: 10.5281/zenodo.10223453
title: AlphaPept Benchmark Dataset

description: This is accompanying data for the benchmark of the AlphaPept software https://www.biorxiv.org/content/10.1101/2021.07.23.453379v1
Files starting with PXD028735: These are the output files and logs from Figure 7: Benchmarking AlphaPept on Thermo and Bruker mixed species datasets. Raw data was taken from PXD028735.
SLURM: Code and logs for running on SLURM cluster for the 200 HeLa proteome test, see Supplementary Table 1
AWS_test: Timings when running on large AWS instances, see Supplementary Table 1
DOI: 10.5281/zenodo.10223454
title: AlphaPept Benchmark Dataset

description: This is accompanying data for the benchmark of the AlphaPept software https://www.biorxiv.org/content/10.1101/2021.07.23.453379v1
Files starting with PXD028735: These are the output files and logs from Figure 7: Benchmarking AlphaPept on Thermo and Bruker mixed species datasets. Raw data was taken from PXD028735.
SLURM: Code and logs for running on SLURM cluster for the 200 HeLa proteome test, see Supplementary Table 1
AWS_test: Timings when running on large AWS instances, see Supplementary Table 1
DOI: 10.6073/pasta/79d7d24c2a6e41b72ea6fc2ec116dba5
title: PBG03 Disk pasture meter measurements to estimate plant standing biomass in the Patch-Burn Grazing experiment at Konza Prairie

description: "PBG" datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. This dataset includes both the annual calibration data for the disk pasture meter measurements (PBG031) and the actual disk pasture meter measurements in the PBG experiment (PBG032). Measurements were taken at a total of 64 transects (8 watersheds x 4 sites per watershed x 2 pasture meter transects per site). Each cattle-grazed watershed (designated as of May 2011 C3A, C3B, C3C, and C1A) and the four Shane cattle-grazed watersheds (C1B, C3SA, C3SB, and C3SC) includes 4 plant composition sampling transects (A-D). Pasture meter measurements were taken along two transects adjacent and parallel to the plant composition transects in each of these watersheds. Standing biomass samples for pasture meter calibration were also collected near the plant composition transects in the same 8 watersheds.
DOI: 10.5281/zenodo.10611830
title: Capsicum chinense and Capsicum baccatum SNP data

description: Three datasets are reported: i) a matrix of 29,820 SNPs for the entire collection including 103 individuals of both species, ii) a matrix of 22,739 SNPs for C. chinense, iii) a matrix of 24,290 SNPs for C. baccatum.
DOI: 10.5281/zenodo.10611831
title: Capsicum chinense and Capsicum baccatum SNP data

description: Three datasets are reported: i) a matrix of 29,820 SNPs for the entire collection including 103 individuals of both species, ii) a matrix of 22,739 SNPs for C. chinense, iii) a matrix of 24,290 SNPs for C. baccatum.
DOI: 10.22003/xfel.eu-data-900203-00
title: Calibration Lab Test (using SPB topic)
DOI: 10.22003/xfel.eu-data-900362-00
title: LASER SASE1 commissioning
DOI: 10.22003/xfel.eu-data-900370-00
title: SASE1 Photon Beam Measurements
DOI: 10.22003/xfel.eu-data-900376-00
title: AGIPD at SPB  commissioning and calibration
DOI: 10.22003/xfel.eu-data-900384-00
title: SASE1 Instrumentation Commissioning
DOI: 10.22003/xfel.eu-data-900390-00
title: FXE commissioning
DOI: 10.5281/zenodo.10577960
title: [Dataset & scripts] to "Spatial scales of kinetic energy in the Arctic Ocean", dataset from Caili Liu

description: ## "Spatial scales of kinetic energy in the Arctic Ocean"

Available dataset for each figure (1~9) and figure10 in the main text, including Jupyter notebook scripts (Fig1, Fig2, Fig5, Fig10) and Matlab scripts (Fig3, Fig4, Fig6, Fig7, Fig8, Fig9).

## Description

This dataset is as the supplementary to the manuscript "Spatial scales of kinetic energy in the Arctic Ocean", including jupyter notebook scripts and matlab scripts of visualization directly for figures1~9.

1) Jupyter notebook scripts for visualizationthe MESH and BG are used for visualization, and *.mat are the dataset for Fig1/2/5/10. The load path in the script should be changed to your files accordingly.

2) Matlab scripts for plotsAll figures/panels are directly produced, but it is composed of panels for Fig7/8/9 additionally.
DOI: 10.5281/zenodo.7895620
title: supplementary to "Spatial scales of kinetic energy in the Arctic Ocean", dataset from Caili Liu

description: ## "Spatial scales of kinetic energy in the Arctic Ocean" Available dataset for each figure (1~9) in the main text, including Jupyter notebook scripts (Fig1, Fig2, Fig5) and Matlab scripts (Fig3, Fig4, Fig6, Fig7, Fig8, Fig9). ## Description This dataset is as the supplementary to the manuscript "Spatial scales of kinetic energy in the Arctic Ocean", including jupyter notebook scripts and matlab scripts of visualization directly for figures1~9. 1) Jupyter notebook scripts for visualization<br> the MESH and BG are used for visualization, and *.mat are the dataset for Fig1/2/5. The load path in the script should be changed to your files accordingly. 2) Matlab scripts for plots<br> All figures/panels are directly produced, but it is composed of panels for Fig7/8/9 additionally.
DOI: 10.6073/pasta/88d2b4a33a9b598c4dcabd09443010e6
title: PBG08 Grasshopper density survey in the Patch-Burn Grazing experiment at Konza Prairie

description: PBG datasets are associated with a long-term, large-scale study that is addressing the effects of fire-grazing interactions in the context of a Patch-Burn Grazing management system designed to promote grassland heterogeneity. Effects of patch-burn grazing management on plant and animal diversity and the nature and variety of wildlife habitat are being assessed in two replicate management units, each consisting of three pastures (watersheds) designated C03A/C03B/C03C and C3SA/C3SB/C3SC. In each patch-burn grazing unit, one watershed is burned and two that are left unburned in a given year. The burning treatments are rotated annually so that each pasture is burned every third year. Each patch-burn grazing unit is paired with an annually-burned pasture for comparison with traditional grazing systems (C01A and C1SB). All grazing units are stocked with cow/calf pairs from approximately 1 May until 1 Oct at a stocking density equal to 3.2 ha per cow/calf. To examine the impact of patch burning and grazing in all 8 units, we monitor changes in plant species composition, residual biomass, grassland bird populations, insect populations, small mammal populations, soil nutrients, and stream water quality1 (1C3SA/C3SB/C3SC unit only). The KSU Department of Animal Science monitors cattle performance, including weight gain and body condition to assess the economic feasibility of using patch-burn management on a widespread basis. This data set focuses on measuring grasshopper density using ring count method (Onsager 1977*) at watersheds C03A, C03B, C03C, C01A, C3SA, C3SB, C3SC, and C01B. Grazing intensity is estimated (Joern 2005) at each site at time of density measurements to model how grasshopper populations respond to grazing.
DOI: 10.48577/jpl.tph223
title: The Role of Melt Migration and Magmatic-Tectonic Interactions in the Formation of Coronae

description: No abstract available.
DOI: 10.57967/hf/1738
title: Global-Game-Jam-Dataset
DOI: 10.5281/zenodo.8374364
title: Design of technical ZnO/ZrO2 catalysts for CO2 hydrogenation to green methanol

description: Datasets supporting the publication 'Design of technical ZnO/ZrO2 catalysts for CO2 hydrogenation to green methanol'
DOI: 10.5281/zenodo.8374365
title: Design of technical ZnO/ZrO2 catalysts for CO2 hydrogenation to green methanol

description: Datasets supporting the publication 'Design of technical ZnO/ZrO2 catalysts for CO2 hydrogenation to green methanol'
DOI: 10.5281/zenodo.10611923
title: Multilingual news article similarity dataset

description: This dataset contains the extended version of the authors' earlier work: https://zenodo.org/records/6507872, where pairs of news articles drawn from the first half of 2020 are annotated for seven aspects of similarity in the original version as well as an additional FRAME aspect:



GEO: How similar is the geographic focus (places, cities, countries, etc.) of the two articles?

ENT: How similar are the named entities (e.g., people, companies, organizations, products, named living beings), excluding previously considered locations appearing in the two articles?

TIME Are the two articles relevant to similar time periods or describing similar time periods?

NAR How similar are the narrative schemas presented in the two articles?

OVERALL Overall, are the two articles covering the same substantive news story? (excluding style, framing, and tone)

STYLE Do the articles have similar writing styles?

TONE Do the articles have similar tones?

FRAME Do the articles have similar framing and express similar opinions?
DOI: 10.5281/zenodo.10611922
title: Multilingual news article similarity dataset

description: This dataset contains the extended version of the authors' earlier work: https://zenodo.org/records/6507872, where pairs of news articles drawn from the first half of 2020 are annotated for seven aspects of similarity in the original version as well as an additional FRAME aspect:



GEO: How similar is the geographic focus (places, cities, countries, etc.) of the two articles?

ENT: How similar are the named entities (e.g., people, companies, organizations, products, named living beings), excluding previously considered locations appearing in the two articles?

TIME Are the two articles relevant to similar time periods or describing similar time periods?

NAR How similar are the narrative schemas presented in the two articles?

OVERALL Overall, are the two articles covering the same substantive news story? (excluding style, framing, and tone)

STYLE Do the articles have similar writing styles?

TONE Do the articles have similar tones?

FRAME Do the articles have similar framing and express similar opinions?
DOI: 10.5281/zenodo.10611938
title: Censo 2022 - Coordenadas dos Endereços - Cadastro Nacional de Endereços para Fins Estatísticos
DOI: 10.5281/zenodo.10611939
title: Censo 2022 - Coordenadas dos Endereços - Cadastro Nacional de Endereços para Fins Estatísticos
DOI: 10.25934/pr00006551
title: Predicting the short- and long-term risk of serious infections in patients with Crohn’s disease: Analysis of the PYRAMID Registry

description: The overall objectives of this proposal are to accurately predict the short- and long-term risk of serious infections with medications used in the treatment of patients with Crohn’s disease (CD). We hypothesize that pre-treatment clinical factors can identify patients at risk of infections when starting adalimumab (a leading biologic agent used to treat Crohn's disease) in the short-term (first 6 months). Once patients are on treatment, and disease is better controlled, the risk of serious infection may decrease, by controlling disease effectively and decreasing the need for corticosteroids and/or opiate pain medications, all of which make patients more susceptible to infections. We will also look to predict the long-term risk of infection once patients are on medication and responding to it. This information will provide patients and providers knowledge to tailor therapy based on patients’ predicted risk of treatment-related complications like serious infections.
DOI: 10.5517/ccdc.csd.cc2gg526
title: CCDC 2277727: Experimental Crystal Structure Determination

description: Related Article: Chantsalnyam Bariashir, Qiu-Yue Zhang, Bayasgalan Ulambayar, Gregory A. Solan, Tong-Ling Liang, Wen-Hua Sun|2023|Chin.J.Polym.Sci.|42|188|doi:10.1007/s10118-023-3037-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gl2fl
title: CSD 2281489: Experimental Crystal Structure Determination

description: Related Article: Roman Shendrik, Ekaterina Kaneva, Viktorija Pankratova, Elizaveta Pankrushina, Tatiana Radomskaya, Veronika Gavrilenko, Polina Loginova, Vladimir Pankratov|2023|Chem.Phys.Lett.|838|141081|doi:10.1016/j.cplett.2024.141081
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gmjj5
title: CCDC 2282887: Experimental Crystal Structure Determination

description: Related Article: Bo-Chao Zhou, Bing-Zhi Chen, Ting-Ting Song, Yang Yang, Li-Ming Zhang, Ding-Wei Ji, Boshun Wan, Qing-An Chen|2024|Angew.Chem.,Int.Ed.|63|e202317299|doi:10.1002/anie.202317299
description: Related Article: Bochao Zhou|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gmjzm
title: CCDC 2282901: Experimental Crystal Structure Determination

description: Related Article: Bochao Zhou|2023|CSD Communication|||
description: Related Article: Bo-Chao Zhou, Bing-Zhi Chen, Ting-Ting Song, Yang Yang, Li-Ming Zhang, Ding-Wei Ji, Boshun Wan, Qing-An Chen|2024|Angew.Chem.,Int.Ed.|63|e202317299|doi:10.1002/anie.202317299
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10558426
title: Data and scripts used for the node2vec2rank paper

description: Data and scripts used in the node2vec2rank paper by Panagiotis Mandros et al. The data include the networks generated in the experiments, and the scripts of how to generate the data.
DOI: 10.5281/zenodo.10558427
title: Data and scripts used for the node2vec2rank paper

description: Data and scripts used in the node2vec2rank paper by Panagiotis Mandros et al. The data include the networks generated in the experiments, and the scripts of how to generate the data.
DOI: 10.3886/e192864v1
title: Neurophysiological correlates of interpersonal discrepancy and social adjustment in an interactive decision-making task in dyads

description: The pursuit of convergence and the social behavioral adjustment of conformity are fundamental cooperative behaviors that help people adjust their mental frameworks to reach a common goal. However, while social psychology extensively studies conformity, there is still plenty to investigate about the neural mechanisms underlying this behavior. We proposed a paradigm with two phases, a pre-activation phase to enhance cooperative tendencies and, later, a social decision-making phase where conformity happens spontaneously and synchronously through the pursuit of convergence. Study 1 shows evidence from 80 participants that the pre-activation phase enhances convergence in dyads. In Study 2, we registered in phase 2 the electroencephalographical (EEG) activity of 36 participants in which dyads had to make a perceptual estimation in three consecutive trials and converge in their decisions without an explicit request or reward to do so. Event-related Potentials (ERP) revealed signal differences in response divergence in three intervals. Time-frequency analysis showed theta, alpha, and beta evidence related to cognitive control, attention, and reward processing associated with social convergence.
description: EEG was recorded using an ANT Neuro ASALab EEG amplifier at 1024 Hz using two different elastic caps from 27 scalp electrodes (Fp1/2, Fz, F3/4, F7/8, FC1/2, FC5/6, Cz, C3/4, Cp1/2, CP5/6, Pz, P3/4, P7/8, Poz, Oz, M1/2). Eye movements were registered with an electrode associated with the participant's dominant hand at the infraorbital ridge of the eye. The electrode impedance was kept below 5kΩ during the task. The electrophysiological signal was bandpass filtered, with cut-off frequencies of 0.1 Hz to 30Hz, and re-referenced to the activity of the two mastoids. Epoch events were extracted from -2 to 2 seconds after the stimuli showing the estimated position of each participant (feedback). Independent Component Analysis (ICA) (Makeig & Onton, 2011) was used to clean artifacts and, afterwards, epochs exceeding ± 100 μV from -100 ms to 1000 ms were automatically rejected. Time-frequency (TF) analysis was also computed by convolving single trials with 7 cycle complex Morlet wavelet for frequencies ranging from 1 to 30 Hz. Changes in power were computed by dividing power value by baseline (-400 ms to -100 ms) for each electrode, frequency, and condition. The ERP/TF analysis focused on three midline electrodes (Fz, Cz and Pz) and the different time ranges were based on visual inspection of the corresponding ERPs. Statistical analysis of time-frequency data was performed in theta (4-8Hz), alpha (8-12Hz) and beta (12-30Hz) bands.
DOI: 10.5519/qd.waqbvfwz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21 records)
DOI: 10.5519/qd.sa7m5cc7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (27 records)
DOI: 10.5281/zenodo.10600895
title: Manuscript: Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype PART 2

description: Behavioral data for manuscript: 

Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype.
DOI: 10.5281/zenodo.10600896
title: Manuscript: Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype PART 2

description: Behavioral data for manuscript: 

Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype.
DOI: 10.15785/sbgrid/1032
title: X-Ray Diffraction data from Beryllofluoride-bound Escherichia coli RssB, source of 8T85 structure

description: native data set
description: These data were indexed in space group C2221 and processed with XDS and Aimless.
DOI: 10.5281/zenodo.10600808
title: Manuscript: Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype PART 1

description: Widefield imaging data for manuscript: 

Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype. 

The zipped files contain widefield imaging data from 105 twelve-minute recordings. Each recording was chunked into 3, four-minute chunks for analysis, resulting in 315 .mat files labeled according to mouse ID and recording date. Within each .mat file are three variables 'data_train','data_test','nanpxs'. data_train and data_test are pixel x timepoint matrices corresponding to two-minutes of data. nanpxs are the masked pixels. Thus, to recreate 2 minutes of preprocessed and deconvolved widefield movies you can use the following (see associated github in the manuscript for matlab functions). 



data= conditionDffMat(data_train',nanpxs); %this converts the pixel x timepoint matrix into a pixel x pixel x timepoint tensor for visualization. 

 

 

 

figure;

for i = 1:size(temp,3)

imagesc(data(:,:,i),[0 0.3]);

colormap magma

pause(0.01)

end
DOI: 10.5281/zenodo.10600809
title: Manuscript: Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype PART 1

description: Widefield imaging data for manuscript: 

Differences in the expression of cortex-wide neural dynamics are related to behavioral phenotype. 

The zipped files contain widefield imaging data from 105 twelve-minute recordings. Each recording was chunked into 3, four-minute chunks for analysis, resulting in 315 .mat files labeled according to mouse ID and recording date. Within each .mat file are three variables 'data_train','data_test','nanpxs'. data_train and data_test are pixel x timepoint matrices corresponding to two-minutes of data. nanpxs are the masked pixels. Thus, to recreate 2 minutes of preprocessed and deconvolved widefield movies you can use the following (see associated github in the manuscript for matlab functions). 



data= conditionDffMat(data_train',nanpxs); %this converts the pixel x timepoint matrix into a pixel x pixel x timepoint tensor for visualization. 

 

 

 

figure;

for i = 1:size(temp,3)

imagesc(data(:,:,i),[0 0.3]);

colormap magma

pause(0.01)

end
DOI: 10.35078/n1dxfd/mzuvv5
title: Sargento Mor B.jpg

description: :unav
DOI: 10.35078/pwflwq/97xeg7
title: Coqueiros B.jpg

description: :unav
DOI: 10.35078/n1dxfd/dbephs
title: Recanto A.jpg

description: :unav
DOI: 10.35078/pwflwq/qsf3td
title: Santa Isabel D.jpg

description: :unav