cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7929892
title: Regulation of mature mRNA levels by RNA processing efficiency

description: Data from the research paper "Regulation of mature mRNA levels by RNA processing efficiency" by Henfrey, C., Murphy, S., and Tellier, M.: -Highest expressed transcript annotation for protein-coding genes, gencode v38. -15 txt (BED) files for chromatin vs nucleoplasm enrichment gene sets: HeLa full gene sets, canonical protein only sets, chromatin RNA seq subsamples, mNET seq subsamples, Raji gene sets. -Proteomics data table -mRNA half-life table -Splicing efficiency for POINT-seq, ChrRNA-seq, NucRNA-seq table -Ser2-P mNET-seq readthrough index data table -Splicing efficiency for siLuc/siEX3 table (ChrRNA-seq, NucRNA-seq) -RMATs output tables for alternative splicing results (siEX3 vs siLuc) -Tables for TSS:TES quantifications (mNET-seq(CTD) vs log2FoldChange, chr/nuc/mnet siEX3 vs siLuc)
description: Funding: Wellcome Trust Investigator Awards [WT106134AIA and WT210641/Z/18/Z to S.M.]. Funding for open access charge: Wellcome Trust
DOI: 10.5281/zenodo.7929893
title: Regulation of mature mRNA levels by RNA processing efficiency

description: Data from the research paper "Regulation of mature mRNA levels by RNA processing efficiency" by Henfrey, C., Murphy, S., and Tellier, M.: -Highest expressed transcript annotation for protein-coding genes, gencode v38. -15 txt (BED) files for chromatin vs nucleoplasm enrichment gene sets: HeLa full gene sets, canonical protein only sets, chromatin RNA seq subsamples, mNET seq subsamples, Raji gene sets. -Proteomics data table -mRNA half-life table -Splicing efficiency for POINT-seq, ChrRNA-seq, NucRNA-seq table -Ser2-P mNET-seq readthrough index data table -Splicing efficiency for siLuc/siEX3 table (ChrRNA-seq, NucRNA-seq) -RMATs output tables for alternative splicing results (siEX3 vs siLuc) -Tables for TSS:TES quantifications (mNET-seq(CTD) vs log2FoldChange, chr/nuc/mnet siEX3 vs siLuc)
description: Funding: Wellcome Trust Investigator Awards [WT106134AIA and WT210641/Z/18/Z to S.M.]. Funding for open access charge: Wellcome Trust
DOI: 10.5281/zenodo.7933151
title: Regulation of mature mRNA levels by RNA processing efficiency

description: Data from the research paper "Regulation of mature mRNA levels by RNA processing efficiency" by Henfrey, C., Murphy, S., and Tellier, M.: -Highest expressed transcript annotation for protein-coding genes, gencode v38. -15 txt (BED) files for chromatin vs nucleoplasm enrichment gene sets: HeLa full gene sets, canonical protein only sets, chromatin RNA seq subsamples, mNET seq subsamples, Raji gene sets. -Proteomics data table -mRNA half-life table -Splicing efficiency for POINT-seq, ChrRNA-seq, NucRNA-seq table -Ser2-P mNET-seq readthrough index data table -Splicing efficiency for siLuc/siEX3 table (ChrRNA-seq, NucRNA-seq) -RMATs output tables for alternative splicing results (siEX3 vs siLuc) -Tables for TSS:TES quantifications (mNET-seq(CTD) vs log2FoldChange, chr/nuc/mnet siEX3 vs siLuc)
description: Funding: Wellcome Trust Investigator Awards [WT106134AIA and WT210641/Z/18/Z to S.M.]. Funding for open access charge: Wellcome Trust
DOI: 10.57967/hf/0646
title: dovichousesimulation
DOI: 10.57967/hf/0647
title: autotrain-data-dovic-simulation-house-of-krebsville
DOI: 10.6084/m9.figshare.22816346
title: Untitled Itemtest

description: test
DOI: 10.6084/m9.figshare.22816346.v1
title: Untitled Itemtest

description: test
DOI: 10.25921/arh5-xz61
title: EK60 Water Column Sonar Data Collected During NF1606
DOI: 10.5281/zenodo.7933175
title: Examining drivers' behaviors to connected and automated vehicles

description: It is envisioned that Connected and Automated Vehicles (CAVs) are the future of transportation as they can assist in minimizing some inefficiencies with the current transport systems. However, it is not clear how drivers of conventional vehicles would interact with CAVs in a mixed traffic environment containing both CAVs and human driven vehicles (HDVs). Thus, this study aims to investigate drivers’ behaviors towards CAVs through driving simulation experiment and national survey study. Two on-ramp and two off-ramp driving simulation scenarios were designed where drivers were asked to merge with two-lane highway in presence of HDVs and CAVs truck platoon in the on-ramp scenarios. In the two off-ramp scenarios, they were asked to take exit in presence of HDVs and CAVs truck platoon in the lane to their right. A before-after survey was conducted among the participant of the driving simulation experiment and an online survey was conducted to investigate their opinion in different traffic, road and environmental condition in presence of CAVs. Furthermore, two driving simulation scenarios were designed to test drivers’ behaviors during automated driving mode and their reaction when the control was shifted to the manual driving mode. Results from the on-ramp scenarios and off-ramp scenarios indicate that more than half of the drivers preferred to merge in front of CAV truck platoon and around two-third of the drivers chose to diverge behind the platoon. The online survey revealed that around two-third of the respondents would not overtake CAV platoon in two-lane two-way road, whereas around 60% would do so in case of three lane highway. During automation failure, drivers demonstrated lower take-over reaction time (TORt), lower deceleration and higher TTC in scenarios with non-driving related tasks (NDRT) compared to the scenarios with no NDRT (manual mode). The before-after survey results suggest that most of the drivers found the navigation with CAV easier after participating in the experiment.
description: Tran-SET Project: 21ITSLSU16
DOI: 10.5281/zenodo.7933174
title: Examining drivers' behaviors to connected and automated vehicles

description: It is envisioned that Connected and Automated Vehicles (CAVs) are the future of transportation as they can assist in minimizing some inefficiencies with the current transport systems. However, it is not clear how drivers of conventional vehicles would interact with CAVs in a mixed traffic environment containing both CAVs and human driven vehicles (HDVs). Thus, this study aims to investigate drivers’ behaviors towards CAVs through driving simulation experiment and national survey study. Two on-ramp and two off-ramp driving simulation scenarios were designed where drivers were asked to merge with two-lane highway in presence of HDVs and CAVs truck platoon in the on-ramp scenarios. In the two off-ramp scenarios, they were asked to take exit in presence of HDVs and CAVs truck platoon in the lane to their right. A before-after survey was conducted among the participant of the driving simulation experiment and an online survey was conducted to investigate their opinion in different traffic, road and environmental condition in presence of CAVs. Furthermore, two driving simulation scenarios were designed to test drivers’ behaviors during automated driving mode and their reaction when the control was shifted to the manual driving mode. Results from the on-ramp scenarios and off-ramp scenarios indicate that more than half of the drivers preferred to merge in front of CAV truck platoon and around two-third of the drivers chose to diverge behind the platoon. The online survey revealed that around two-third of the respondents would not overtake CAV platoon in two-lane two-way road, whereas around 60% would do so in case of three lane highway. During automation failure, drivers demonstrated lower take-over reaction time (TORt), lower deceleration and higher TTC in scenarios with non-driving related tasks (NDRT) compared to the scenarios with no NDRT (manual mode). The before-after survey results suggest that most of the drivers found the navigation with CAV easier after participating in the experiment.
description: Tran-SET Project: 21ITSLSU16
DOI: 10.25921/htpz-w291
title: EK60 Water Column Sonar Data Collected During NF1610
DOI: 10.6084/m9.figshare.22816361
title: Original social media data

description: The hereby presented data are extracted from Meta, Tiktok and Twitter.
DOI: 10.15468/dl.pnbdgy
title: Occurrence Download

description: A dataset containing 45828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium uliginosum L.",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1980",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Specimen"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Living Specimen"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Material sample"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Machine Observation"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Literature Occurrence"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Unknown evidence"
 ]
 }
 }
 ]
}

 The dataset includes 45828 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021220-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9n5dqr
title: Occurrence Download

description: A dataset containing 45669 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galinsoga quadriradiata Cav."
 ]
}

 The dataset includes 45669 records from 363 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004321-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7t7nzx
title: Occurrence Download

description: A dataset containing 765 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Prunus buergeriana Miq."
 ]
}

 The dataset includes 765 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138238-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaz3qa
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oroya peruviana (K.Schum.) Britton & Rose"
 ]
}

 The dataset includes 152 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198350-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syosjh
title: Occurrence Download

description: A dataset containing 5279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1000-2019",
 "Geometry POLYGON((-97.79022 19.31633,-97.80487 18.99807,-97.5412 19.03269,-97.4826 18.8803,-97.40936 19.03962,-97.44598 19.17803,-97.40936 19.24028,-97.65839 19.35779,-97.79022 19.31633))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5279 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007361-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b5oegp
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((147.154 -9.416,147.154 -8.868,147.834 -8.868,147.834 -9.416,147.154 -9.416))",
 "DatasetKey is Natural History Museum (London) Collection Specimens",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 259 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004321-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8u4mnw
title: Occurrence Download

description: A dataset containing 792 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Prunus wilsonii (C.K.Schneid.) Koehne"
 ]
}

 The dataset includes 792 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138227-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9u7unj
title: Occurrence Download

description: A dataset containing 50409 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Perissodactyla"
 ]
}

 The dataset includes 50409 records from 271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022647-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8d0ixe
title: Occurrence Download

description: A dataset containing 1712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Antrozous pallidus (LeConte, 1856)"
 ]
}

 The dataset includes 1712 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004321-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x277pa
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Swertia asarifolia Franch."
 ]
}

 The dataset includes 18 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138228-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ageif2
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clematis ×takedana Makino"
 ]
}

 The dataset includes 68 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031614-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ixehj7
title: Occurrence Download

description: A dataset containing 116744 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Impatiens glandulifera Royle",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 116744 records from 309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004321-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bb477b
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cirsium ferum Kitam."
 ]
}

 The dataset includes 34 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138232-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mb2gfg
title: Occurrence Download

description: A dataset containing 704815 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ephemeroptera"
 ]
}

 The dataset includes 704815 records from 459 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004321-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16576097
title: Additional file 2 of Complete mitogenomes of Anopheles peditaeniatus and Anopheles nitidus and phylogenetic relationships within the genus Anopheles inferred from mitogenomes

description: Additional file 2: Table S2. Relative synonymous codon usage (RSCU) in 76 mitochondrial genomes of the genus Anopheles.
DOI: 10.6084/m9.figshare.16576097.v1
title: Additional file 2 of Complete mitogenomes of Anopheles peditaeniatus and Anopheles nitidus and phylogenetic relationships within the genus Anopheles inferred from mitogenomes

description: Additional file 2: Table S2. Relative synonymous codon usage (RSCU) in 76 mitochondrial genomes of the genus Anopheles.
DOI: 10.6084/m9.figshare.19721872
title: Genetic and pathogenic variation of <i>Botrytis cinerea</i>, the causal agent of grey mould on <i>Panax ginseng</i> in China

description: Grey mould, caused by <i>Botrytis cinerea</i>, is an increasingly destructive disease of ginseng (<i>Panax ginseng</i>) in China. However, the extent of variation in the morphological characteristics of fungal colonies, genetic background and pathogenicity of different strains of this pathogen remains unknown. In this study, we isolated and identified 102 isolates of <i>B. cinerea</i> from ginseng. Among these, the sclerotial phenotype was dominant, followed by the mycelial and conidial phenotypes, with the proportion of each phenotype in the pathogen population showing no obvious variance across three provinces. Isolates were separated into three groups with differing pathogenicity, based on the diameter of the lesions they caused in pathogenicity tests; moderate-pathogenicity isolates were dominant, followed by strong- and weak-pathogenicity isolates. Variation was observed in the pathogenicity of isolates from three provinces. The Nei’s genetic diversity index and the Shannon’s information index of isolates from Jilin province was highest, followed by those from Liaoning, while isolates from Heilongjiang displayed the lowest genetic diversity. Furthermore, most of the genetic variance was found within the geographically defined <i>B. cinerea</i> populations; the low-genetic variance among populations was probably counteracted by gene flow. Results from this study provide a base understanding of genetic and pathogenic variation in <i>B. cinerea</i> populations from the main ginseng-growing regions of China, which will be helpful for further research and control of grey mould of ginseng.
DOI: 10.6084/m9.figshare.19721872.v1
title: Genetic and pathogenic variation of <i>Botrytis cinerea</i>, the causal agent of grey mould on <i>Panax ginseng</i> in China

description: Grey mould, caused by <i>Botrytis cinerea</i>, is an increasingly destructive disease of ginseng (<i>Panax ginseng</i>) in China. However, the extent of variation in the morphological characteristics of fungal colonies, genetic background and pathogenicity of different strains of this pathogen remains unknown. In this study, we isolated and identified 102 isolates of <i>B. cinerea</i> from ginseng. Among these, the sclerotial phenotype was dominant, followed by the mycelial and conidial phenotypes, with the proportion of each phenotype in the pathogen population showing no obvious variance across three provinces. Isolates were separated into three groups with differing pathogenicity, based on the diameter of the lesions they caused in pathogenicity tests; moderate-pathogenicity isolates were dominant, followed by strong- and weak-pathogenicity isolates. Variation was observed in the pathogenicity of isolates from three provinces. The Nei’s genetic diversity index and the Shannon’s information index of isolates from Jilin province was highest, followed by those from Liaoning, while isolates from Heilongjiang displayed the lowest genetic diversity. Furthermore, most of the genetic variance was found within the geographically defined <i>B. cinerea</i> populations; the low-genetic variance among populations was probably counteracted by gene flow. Results from this study provide a base understanding of genetic and pathogenic variation in <i>B. cinerea</i> populations from the main ginseng-growing regions of China, which will be helpful for further research and control of grey mould of ginseng.
DOI: 10.6084/m9.figshare.8187545
title: Illumination of cell cycle progression by multi-fluorescent sensing system

description: Multi-fluorescent imaging of cell cycle progression is essential for the study of cell proliferation <i>in vitro</i> and <i>in vivo</i>. However, there remain challenges, particularly to image cell cycle progression in living cell with available imaging techniques due to lacking the suitable probe. Here, we design a triple fluorescent sensors system making the cell cycle progression visible. Multi-fluorescent sensor shows the proliferating or proliferated cells with different colors. We thus generate the construct and adenovirus to probe cell cycle progression in living cell lines and primary cardiomyocytes. Furthermore, we create the knock-in transgenic mouse to monitor cell cycle progression <i>in vivo</i>. Together, the system can be applied to investigate cell proliferation or cell cycle progression in living cells and animals.
DOI: 10.6084/m9.figshare.8187545.v1
title: Illumination of cell cycle progression by multi-fluorescent sensing system

description: Multi-fluorescent imaging of cell cycle progression is essential for the study of cell proliferation <i>in vitro</i> and <i>in vivo</i>. However, there remain challenges, particularly to image cell cycle progression in living cell with available imaging techniques due to lacking the suitable probe. Here, we design a triple fluorescent sensors system making the cell cycle progression visible. Multi-fluorescent sensor shows the proliferating or proliferated cells with different colors. We thus generate the construct and adenovirus to probe cell cycle progression in living cell lines and primary cardiomyocytes. Furthermore, we create the knock-in transgenic mouse to monitor cell cycle progression <i>in vivo</i>. Together, the system can be applied to investigate cell proliferation or cell cycle progression in living cells and animals.
DOI: 10.6084/m9.figshare.7139018
title: Additional file 1: of Epigenetic prediction of complex traits and death

description: DNAm signature CpGs and corresponding weights for BMI (Table S1), smoking (Table S2), alcohol consumption (Table S3), educational attainment (Table S4), total cholesterol (Table S5), HDL cholesterol (Table S6), LDL (with remnant) cholesterol (Table S7), Total:HDL cholesterol ratio (Table S8), waist-to-hip ratio (Table S9), and percentage body fat (Table S10). (XLSX 159 kb)
DOI: 10.6084/m9.figshare.7139018.v1
title: Additional file 1: of Epigenetic prediction of complex traits and death

description: DNAm signature CpGs and corresponding weights for BMI (Table S1), smoking (Table S2), alcohol consumption (Table S3), educational attainment (Table S4), total cholesterol (Table S5), HDL cholesterol (Table S6), LDL (with remnant) cholesterol (Table S7), Total:HDL cholesterol ratio (Table S8), waist-to-hip ratio (Table S9), and percentage body fat (Table S10). (XLSX 159 kb)
DOI: 10.6084/m9.figshare.7139042
title: Additional file 3: of Epigenetic prediction of complex traits and death

description: Table S11. Prediction of traits with and without genetic scores. Table S12. Cox proportional hazards survival models output for phenotypic, epigenetic (DNAm), and genetic (polygenic) predictors of health and lifestyle factors. (XLSX 14 kb)