cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/a1fff894a469042bceeff05561a3d9f7
title: Eddy flux measurements during 2015 from low marsh site (Spartina alterniflora) within Shad Creek catchment, Rowley, Massachusetts.

description: We deployed an eddy covariance system to measure ecosystem-atmosphere exchange of CO2 above a low marsh system (Spartina alterniflora) located within the Shad creek catchment off Plum Island Sound, Rowley MA. The data represents CO2 exchange for all July to October 2015. This site was established in 2015.
DOI: 10.6073/pasta/314852535992295685284214cc0ae78b
title: Model executable, output, drivers and parameters for modeling organism acclimation to changing availability of and requirements for substitutable and interdependent resources

description: Files used to generate the data for figures in: Rastetter, EB, Kwiatkowski, BL. An approach to modeling resource optimization for substitutable and interdependent resources. Ecological Modelling (2020). https://doi.org/10.1016/j.ecolmodel.2020.109033. This paper presents a hierarchical approach to modeling organism acclimation to changing availability of and requirements for substitutable and interdependent resources. Substitutable resources are resources that fill the same metabolic or stoichiometric need of the organism. Interdependent resources are resources whose acquisition or expenditure are tightly linked (e.g., light, carbon dioxide, and water in photosynthesis and associated transpiration). We illustrate the approach by simulating the development of vegetation with four substitutable sources of nitrogen that differ only in the cost of their uptake and assimilation.
DOI: 10.6073/pasta/24624a295f418f36ae90c99ab49bca07
title: Model output, drivers and parameters for Ecosystem Recovery from Disturbance is Constrained by N Cycle Openness, Vegetation-Soil N Distribution, Form of N Losses, and the Balance Between Vegetation and Soil-Microbial Processes

description: Files used to generate the data for figures in: Rastetter, EB, Kling, GW, Shaver, GR, Crump, BC, Gough, L. Ecosystem Recovery from Disturbance Is Constrained by N Cycle Openness, Vegetation-Soil N Distribution, Form of N Losses, and the Balance between Vegetation and Soil-Microbial Processes. Ecosystems (2020). https://doi.org/10.1007/s10021-020-00542-3. This paper present a framework for assessing biogeochemical recovery of terrestrial ecosystems from disturbance. We identify three recovery phases. In Phase 1, nitrogen is redistributed from soil organic matter to vegetation, but the ecosystem continues to lose nitrogen because the recovering vegetation cannot take up nitrogen as fast as it is released from soil. In Phase 2, the ecosystem begins re-accumulating nitrogen and converges on a quasi-steady state in which vegetation and soil-microbial processes are in balance. In Phase 3, vegetation and soil-microbial processes remain in balance and the ecosystem slowly re-accumulates the remaining nitrogen.
DOI: 10.5281/zenodo.5772373
title: Output Data: gcam_v5.4

description: Output data for GCAM official release v5.4. Please cite the GCAM v 5.4 model which produced this dataset when using this data: Bond-Lamberty et al. 2021. JGCRI/gcam-core: GCAM 5.4 (gcam-v5.4). Zenodo. https://doi.org/10.5281/zenodo.5093192
description: {"references": ["Bond-Lamberty et al.\u00a02021. JGCRI/gcam-core: GCAM 5.4 (gcam-v5.4). Zenodo. https://doi.org/10.5281/zenodo.5093192", "Calvin, K., Patel, P., Clarke, L., Asrar, G., Bond-Lamberty, B., Cui, R. Y., Di Vittorio, A., Dorheim, K., Edmonds, J., Hartin, C., Hejazi, M., Horowitz, R., Iyer, G., Kyle, P., Kim, S., Link, R., McJeon, H., Smith, S. J., Snyder, A., Waldhoff, S., and Wise, M.: GCAM v5.1: representing the linkages between energy, water, land, climate, and economic systems, Geosci. Model Dev., 12, 677\u2013698, https://doi.org/10.5194/gmd-12-677-2019, 2019.", "GCAM v5.4 Documentation: Global Change Analysis Model (GCAM). http://jgcri.github.io/gcam-doc/"]}
DOI: 10.5281/zenodo.5772372
title: Output Data: gcam_v5.4

description: Output data for GCAM official release v5.4. Please cite the GCAM v 5.4 model which produced this dataset when using this data: Bond-Lamberty et al. 2021. JGCRI/gcam-core: GCAM 5.4 (gcam-v5.4). Zenodo. https://doi.org/10.5281/zenodo.5093192
description: {"references": ["Bond-Lamberty et al.\u00a02021. JGCRI/gcam-core: GCAM 5.4 (gcam-v5.4). Zenodo. https://doi.org/10.5281/zenodo.5093192", "Calvin, K., Patel, P., Clarke, L., Asrar, G., Bond-Lamberty, B., Cui, R. Y., Di Vittorio, A., Dorheim, K., Edmonds, J., Hartin, C., Hejazi, M., Horowitz, R., Iyer, G., Kyle, P., Kim, S., Link, R., McJeon, H., Smith, S. J., Snyder, A., Waldhoff, S., and Wise, M.: GCAM v5.1: representing the linkages between energy, water, land, climate, and economic systems, Geosci. Model Dev., 12, 677\u2013698, https://doi.org/10.5194/gmd-12-677-2019, 2019.", "GCAM v5.4 Documentation: Global Change Analysis Model (GCAM). http://jgcri.github.io/gcam-doc/"]}
DOI: 10.15139/s3/3fiozj
title: Alternative Approaches to MDA Coverage Surveys in Burkina Faso

description: Coverage surveys are an important tool for programs to evaluate their reporting systems and to determine whether effective MDA coverage has been achieved. However, for various reasons coverage surveys are seldom implemented. Some key challenges are: perceived technical difficulty, lack of resources, and lack of standardized guidance on how to conduct coverage surveys. This protocol seeks to address the 1st and 3rd points by comparing the feasibility of three different coverage survey methods (EPI approach, LQAS, and segmentation). This study was completed in 3 districts in Burkina Faso. All 3 districts found that their survey coverage was above the WHO target threshold (65% for LF). Furthermore, in all 3 cases the survey coverage validated (or nearly validated) the reported coverage. Taken together this suggests that the Burkina Faso program is working well. The feasibility results found all 3 methods to be very similar with regards to time, cost and perceived difficulty. Because only the segmentation approach results in a probability sample, this method was recommended by the M Working Group and ultimately approved by the WHO's Strategic Technical Advisory Group to NTDs. Since the approval, significant work has been underway to create guidelines for conducting coverage surveys for preventive chemotherapy. An Excel tool was created to improve the usability of the tool and online learning modules are currently in the works. This particular Dataverse entry focuses on the study data from three districts selected in Burkina Faso.
DOI: 10.15139/s3/vembfm
title: Alternative Approaches to MDA Coverage Surveys in Uganda

description: Coverage surveys are an important tool for programs to evaluate their reporting systems and to determine whether effective MDA coverage has been achieved. However, for various reasons coverage surveys are seldom implemented. Some key challenges are: perceived technical difficulty, lack of resources, and lack of standardized guidance on how to conduct coverage surveys. This protocol seeks to address the 1st and 3rd points by comparing the feasibility of three different coverage survey methods (EPI approach, LQAS, and segmentation). This study was completed all 3 methods in the same district in Uganda. All 3 coverage surveys were integrated surveys, meaning that the questionnaire addressed coverage for ALB, IVM, PZQ, and ZITH. All methods found that the survey coverage was far below the WHO target thresholds. Furthermore, for all drugs assessed, the survey coverage was far below the reported coverage (the reported coverage suggested that coverage was above the target thresholds). Taken together this suggests that there are major issues with both the MDA and the reporting system in this district in Uganda. The country program has since taken important steps to improve coverage and the reporting system. The feasibility results found all 3 methods to be very similar with regards to time, cost and perceived difficulty. Because only the segmentation approach results in a probability sample, this method was recommended by the M Working Group and ultimately approved by the STAG. Since the approval, significant work has been underway to create guidelines for conducting coverage surveys for preventive chemotherapy. An Excel tool was created to improve the usability of the tool and online learning modules are currently in the works. This particular Dataverse entry focuses on the study data from Uganda.
DOI: 10.6073/pasta/4b2fc2db8c0f775cc97166bb91e299ad
title: Eddy flux measurements during 2016 from low marsh site (Spartina alterniflora) within Shad Creek catchment, Rowley, Massachusetts, PIE LTER.

description: We deployed an eddy covariance system to measure ecosystem-atmosphere exchange of CO2 above a low marsh system (Spartina alterniflora) located within the Shad creek catchment off Plum Island Sound, Rowley MA. The data represents CO2 exchange for all July to October 2016. This site was established in 2015.
DOI: 10.25505/fiz.icsd.cczxqk4
title: CSD 921337: Experimental Crystal Structure Determination

description: Related Article: N. Smith|1936|J.Am.Chem.Soc.|58|173|doi:10.1021/ja01292a050
DOI: 10.5519/qd.dweg9r9h
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.19193282
title: Zoom class survey data (raw data to be process).xlsx

description: An online survey was designed in Qualtrics, which was made up of two parts: 1-5 on learner effort in this course; 6 (33 statements) regarding language class anxiety.<br>The scale with 33 statements was revised from FLCAS by Horwitz et al. (1986).
DOI: 10.6084/m9.figshare.19193294
title: Stockfish Dataset Test

description: Testing import from figshare with Stockfish pytorch vector<br>
DOI: 10.6084/m9.figshare.19189652
title: Supplementary Data

description: Supplementary Data
DOI: 10.25392/leicester.data.19189322
title: Investigating pupillometry as a potential measure of tinnitus Intrusiveness on a test of auditory short-term memory

description: Data files contain summary data for participants in a study accepted for publication by Ear and Hearing entitled,<br> “An Exploratory Investigation of Pupillometry as a Measure of Tinnitus Intrusiveness on a Test of Auditory Short-Term Memory.”<br>See the "Read Me - Fig Share Files" for more information.
DOI: 10.25392/leicester.data.19189322.v1
title: Investigating pupillometry as a potential measure of tinnitus Intrusiveness on a test of auditory short-term memory

description: Data files contain summary data for participants in a study accepted for publication by Ear and Hearing entitled,<br> “An Exploratory Investigation of Pupillometry as a Measure of Tinnitus Intrusiveness on a Test of Auditory Short-Term Memory.”<br>See the "Read Me - Fig Share Files" for more information.
DOI: 10.5281/zenodo.6122447
title: 15-mer rank table for use with Fuzzion2

description: The Fuzzion2 program requires a k-mer rank table. This is a 4-GB binary file holding the frequency ranks of 15-mers in the GRCh38 human reference genome. See https://github.com/stjude/fuzzion2 for details.
DOI: 10.5281/zenodo.6122446
title: 15-mer rank table for use with Fuzzion2

description: The Fuzzion2 program requires a k-mer rank table. This is a 4-GB binary file holding the frequency ranks of 15-mers in the GRCh38 human reference genome. See https://github.com/stjude/fuzzion2 for details.
DOI: 10.5281/zenodo.6127601
title: UniFrac 330k dataset

description: UniFrac 330k dataset
DOI: 10.5281/zenodo.6127600
title: UniFrac 330k dataset

description: UniFrac 330k dataset
DOI: 10.17632/dcy22r53ns.1
title: Dataset for "Hepatic glycogen is a key regulator of hypothalamic pAkt/Akt ratio in high-sugar/high-fat diet-induced obesity."

description: This data was used in the production of the article entitled "Hepatic glycogen is a key regulator of hypothalamic pAkt/Akt ratio in HSHF-induced obesity." submitted to publication. Until acceptance, only metadata will be available.

Researcher in charge: Debora Estadella
Researcher in charge of data collection: Breno Picin Casagrande
Date of data collection: 01/04/2018 - 1/12/2019
Financial support: CAPES - Brazil, FAPESP (2017/25420-3), CNPq

Until publication, only the metadata will be available due to ethical issues.
DOI: 10.17632/p3m8776742.2
title: Systematic mapping of nuclear domain-associated transcripts reveals speckles and lamina as hubs of functionally distinct retained introns

description: Raw files for microscopy and western blot data presented in this study.
*AR. Barutcu and M. Wu equally contributed to this study.

SUMMARY
The nucleus is highly compartmentalized through the formation of distinct classes of membraneless domains, yet the composition and function of many of these structures is not well understood. Using APEX2-mediated proximity labelling and RNA sequencing, we surveyed transcripts associated with nuclear speckles, several additional domains, and the lamina. Remarkably, speckles and lamina are associated with distinct classes of retained introns enriched in genes that function in RNA processing, translation, and the cell cycle. In contrast to the lamina-proximal introns, retained introns associated with speckles are relatively short, GC-rich, and enriched for functional sites of RNA binding proteins that are concentrated in these domains. They are also highly differentially regulated across diverse cellular contexts, including the cell cycle. Our study thus provides a resource of nuclear domain-associated transcripts and further reveals speckles and lamina as hubs of distinct populations of retained introns linked to gene regulation and cell cycle progression.
DOI: 10.17632/gtjyn9yhvg.2
title: MD_6276_6277 HW_VPN_MNELC_17Feb2021(EDT1.2)

description: MD_6276_6277 HW_VPN_MNELC_17Feb2021(EDT1.1)
DOI: 10.5281/zenodo.5513460
title: Foreshock Activity Promoted by Locally Elevated Loading Rate on a 4-meter-long Laboratory Fault

description: Experimental data and event catalog used for the study "Foreshock Activity Promoted by Locally Elevated Loading Rate on a 4-meter-long Laboratory Fault"
DOI: 10.5281/zenodo.6115945
title: Regional model (ACM) output used to elucidate coastal ocean carbon transport processes in the northwest North Atlantic (Rutherford and Fennel, 2022; GRL)

description: Key variables from the regional Atlantic Canada model (ACM) used to elucidate coastal ocean carbon transport in the northwest North Atlantic. The dataset includes all model variables required to reproduce the results in Rutherford & Fennel (2022, <em>GRL</em>). See RutherfordandFennel_GRL_ACM_data_README.txt for more details.
DOI: 10.5281/zenodo.6115944
title: Regional model (ACM) output used to elucidate coastal ocean carbon transport processes in the northwest North Atlantic (Rutherford and Fennel, 2022; GRL)

description: Key variables from the regional Atlantic Canada model (ACM) used to elucidate coastal ocean carbon transport in the northwest North Atlantic. The dataset includes all model variables required to reproduce the results in Rutherford & Fennel (2022, <em>GRL</em>). See RutherfordandFennel_GRL_ACM_data_README.txt for more details.
DOI: 10.6084/m9.figshare.19193351
title: Rekapitulation buying Fastfood - .xlsx

description: Anliysis of Decisions to buy Fast Food For Muslim
DOI: 10.6084/m9.figshare.19193351.v1
title: Rekapitulation buying Fastfood - .xlsx

description: Anliysis of Decisions to buy Fast Food For Muslim
DOI: 10.6084/m9.figshare.19193327
title: Datasets for Phylogeography and population genetics of a widespread cold- adapted ant, Prenolepis imparis

description: This project contains all the data used for analyses in the paper "Phylogeography and population genetics of a widespread cold- adapted ant, <i>Prenolepis imparis</i>". In the main folder, you will find a README.txt file that will explain the files and folders. In addition to the files, we are also including the results and commands or scripts used to run the programs. <br>
DOI: 10.6084/m9.figshare.19193327.v1
title: Datasets for Phylogeography and population genetics of a widespread cold- adapted ant, Prenolepis imparis

description: This project contains all the data used for analyses in the paper "Phylogeography and population genetics of a widespread cold- adapted ant, <i>Prenolepis imparis</i>". In the main folder, you will find a README.txt file that will explain the files and folders. In addition to the files, we are also including the results and commands or scripts used to run the programs. <br>
DOI: 10.25919/kr3t-jk56
title: Chest X-Ray Report Generation Checkpoints for CvT2DistilGPT2

description: The collection is of the checkpoints associated with the paper "Improving Chest X-Ray Report Generation by Leveraging Warm-Starting".
DOI: 10.5281/zenodo.6120862
title: Human-Machine Music Improvisation Artefacts

description: Corpus of artefacts from a study: Design Considerations for Human-AI Communication in Music Improvisation. A human musician and an AI music system performed together as a duo in an improvised music setting. Included here are: Audio recordings of the music performances, participants comments referencing specific points in the performance recording and interview transcriptions from a follow up interview.
DOI: 10.5281/zenodo.5499007
title: Human-Machine Music Improvisation Artefacts

description: Corpus of artefacts from a study: Design Considerations for Human-AI Communication in Music Improvisation. A human musician and an AI music system performed together as a duo in an improvised music setting. Included here are: Audio recordings of the music performances, participants comments referencing specific points in the performance recording and interview transcriptions from a follow up interview.
DOI: 10.6084/m9.figshare.19187714
title: Table S1. The phosphoproteins identified in small intestine tissue

description: The phosphoproteins identified in small intestine tissue
DOI: 10.6084/m9.figshare.19187714.v2
title: Table S1. The phosphoproteins identified in small intestine tissue

description: The phosphoproteins identified in small intestine tissue
DOI: 10.6084/m9.figshare.19187714.v1
title: Table S1

description: The phosphoproteins identified in small intestine tissue
DOI: 10.5281/zenodo.6121278
title: Characterization of a Clematis terniflora DC. coumarin synthase involved in coumarin biosynthesis

description: <em>Clematis terniflora</em> DC. has been used for anti-inflammatory, antihypertensive and other diseases in some Asian countries, and has high medicinal value. Coumarins are the major secondary metabolites produced by<em> C. terniflora</em> leaves under ultraviolet B (UV-B) radiation followed by dark treatment, but the synthesis of coumarin in <em>C. terniflora</em> has not been fully elucidated. Coumarin synthase is a key enzyme to produce coumarin core structure, which is the first step to form coumarins. Based on previous transcriptome data, we identified a BADH acyltransferase CtCOSY highly expressed in leaves after stresses and characterized it functionally. Experiments have proved that CtCOSY could couple with 4-coumarinyl CoA-ligase in vitro to produce umbelliferone. By analyzing the proteomics and metabolomics of control plants and CtCOSY-silenced plants before and after UV-B followed by dark treatment, we found that double stresses disturbed the energy metabolism pathway and phenylpropanoids synthesis pathway. CtCOSY silencing affected plant’s regulation of primary metabolism to a certain extent, and it also affected the accumulation of compounds in shikimic acid pathway and coumarin synthesis. This study provides evidence that CtCOSY is involved in the synthesis of coumarin in <em>C. terniflora.</em>
DOI: 10.5281/zenodo.6121277
title: Characterization of a Clematis terniflora DC. coumarin synthase involved in coumarin biosynthesis

description: <em>Clematis terniflora</em> DC. has been used for anti-inflammatory, antihypertensive and other diseases in some Asian countries, and has high medicinal value. Coumarins are the major secondary metabolites produced by<em> C. terniflora</em> leaves under ultraviolet B (UV-B) radiation followed by dark treatment, but the synthesis of coumarin in <em>C. terniflora</em> has not been fully elucidated. Coumarin synthase is a key enzyme to produce coumarin core structure, which is the first step to form coumarins. Based on previous transcriptome data, we identified a BADH acyltransferase CtCOSY highly expressed in leaves after stresses and characterized it functionally. Experiments have proved that CtCOSY could couple with 4-coumarinyl CoA-ligase in vitro to produce umbelliferone. By analyzing the proteomics and metabolomics of control plants and CtCOSY-silenced plants before and after UV-B followed by dark treatment, we found that double stresses disturbed the energy metabolism pathway and phenylpropanoids synthesis pathway. CtCOSY silencing affected plant’s regulation of primary metabolism to a certain extent, and it also affected the accumulation of compounds in shikimic acid pathway and coumarin synthesis. This study provides evidence that CtCOSY is involved in the synthesis of coumarin in <em>C. terniflora.</em>
DOI: 10.6084/m9.figshare.19187741.v1
title: Table S2

description: Overview of the tissue-specific phosphorylation
DOI: 10.25505/fiz.icsd.cc1jyk89
title: CSD 1428581: Experimental Crystal Structure Determination

description: Related Article: M. Gasperin|1982|Acta Crystallogr.,Sect.B:Struct.Crystallogr.Cryst.Chem.|38|2024|doi:10.1107/S056774088200781X
DOI: 10.5517/ccdc.csd.cc2035lx
title: CCDC 1850098: Experimental Crystal Structure Determination

description: Related Article: J. Fábry|2018|Acta Crystallogr.,Sect.E:Cryst.Commun.|74|1295|doi:10.1107/S2056989018011192
description: Related Article: S. Kuwajima, Y. Arai, H. Kitajima, Y. Kikukawa, Y. Hayashi|2018|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|74|1295|doi:10.1107/S2053229618008914
DOI: 10.5281/zenodo.6131535
title: Thermal conductivity of carbon dioxide at high pressure

description: This repository contains experimental data on the thermal conductivity of carbon dioxide (CO2) at high pressures and room temperature. This dataset is presented in a manuscript submitted to Journal of Geophysical Research-Planets by Sean R. Shieh, Wen-Pin Hsieh, Yi-Chih Tsao, Christian Crisostomo, and Han Hsu on January 4, 2022, entitled: Low Thermal Conductivity of Carbon Dioxide at High Pressure: Implications for Icy Planetary Interiors
DOI: 10.5281/zenodo.6131534
title: Thermal conductivity of carbon dioxide at high pressure

description: This repository contains experimental data on the thermal conductivity of carbon dioxide (CO2) at high pressures and room temperature. This dataset is presented in a manuscript submitted to Journal of Geophysical Research-Planets by Sean R. Shieh, Wen-Pin Hsieh, Yi-Chih Tsao, Christian Crisostomo, and Han Hsu on January 4, 2022, entitled: Low Thermal Conductivity of Carbon Dioxide at High Pressure: Implications for Icy Planetary Interiors