cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1284350.v3
title: Cloning and tissue expression profiling of the <i>GnRHR</i> gene of the Muscovy duck (<i>Cairina moschata</i>): polymorphism and association with egg-laying performance

description: 1. cDNA sequence of gonadotropin-releasing-hormone receptor (<i>GnRHR</i>) gene was cloned and an association analysis between mutations and laying performance was conducted.2. A 1680-bp cDNA sequence of Muscovy duck <i>GnRHR</i>, which encodes 415 amino acids, was obtained and characterised. Phylogenetic analysis revealed that Muscovy duck <i>GnRHR</i> has a close relationship with <i>Gallus gallus GnRHR</i>.3. There were significantly different expression profiles between 4 age periods in the hypothalamus, pituitary, and ovary. The expression of <i>GnRHR</i> at the age of 36 weeks (laying period) was higher than other time points in the three tissues. <i>GnRHR</i> was expressed in 12 different tissues. The highest expression levels were observed in hypothalamus, pituitary and gonads.4. A single nucleotide polymorphism detected in the second intron was associated with egg-laying performance. Individuals with genotype TT had better egg-laying performance from individuals with genotypes CC or TC. Therefore, <i>GnRHR</i> could be used as a marker gene for laying performance in Muscovy duck.
DOI: 10.6084/m9.figshare.1284292
title: Part 1 of LTSTM data from Sept 2004

description: This is the first part of a set from September 2004 of low temperature STM data.
DOI: 10.6084/m9.figshare.1284320
title: 1st part of October 2004 LTSTM data set

description: This is the first part of the October 2004 set of low temperature STM data.
DOI: 10.7284/135976
title: Radiometer data collected during research cruise AT42-16 using a Biospherical QSR-2150 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1284306.v1
title: Part 2 of LTSTM data set from Sept 2004

description: This is the second part of a data set from September 2004 of low temperature STM data.
DOI: 10.6084/m9.figshare.1284320.v1
title: 1st part of October 2004 LTSTM data set

description: This is the first part of the October 2004 set of low temperature STM data.
DOI: 10.6084/m9.figshare.1284350.v2
title: Cloning and tissue expression profiling of the <i>GnRHR</i> gene of the Muscovy duck (<i>Cairina moschata</i>): polymorphism and association with egg-laying performance

description: 1. cDNA sequence of gonadotropin-releasing-hormone receptor (<i>GnRHR</i>) gene was cloned and an association analysis between mutations and laying performance was conducted.2. A 1680-bp cDNA sequence of Muscovy duck <i>GnRHR</i>, which encodes 415 amino acids, was obtained and characterised. Phylogenetic analysis revealed that Muscovy duck <i>GnRHR</i> has a close relationship with <i>Gallus gallus GnRHR</i>.3. There were significantly different expression profiles between 4 age periods in the hypothalamus, pituitary, and ovary. The expression of <i>GnRHR</i> at the age of 36 weeks (laying period) was higher than other time points in the three tissues. <i>GnRHR</i> was expressed in 12 different tissues. The highest expression levels were observed in hypothalamus, pituitary and gonads.4. A single nucleotide polymorphism detected in the second intron was associated with egg-laying performance. Individuals with genotype TT had better egg-laying performance from individuals with genotypes CC or TC. Therefore, <i>GnRHR</i> could be used as a marker gene for laying performance in Muscovy duck.
DOI: 10.7284/135965
title: Speedlog data collected during research cruise AT42-16 using a Furuno DS-50 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1284187
title: Gap analysis - potatoes occurrences

description: Records (with and without coordinates) representing germplasm accessions and sightings of the wild relatives of potato. These records were used as input to assess the <em>ex situ</em> conservation urgency of 73 wild relatives of potato
DOI: 10.6084/m9.figshare.1284187.v2
title: Gap analysis - potatoes occurrences

description: Records (with and without coordinates) representing germplasm accessions and sightings of the wild relatives of potato. These records were used as input to assess the <em>ex situ</em> conservation urgency of 73 wild relatives of potato
DOI: 10.7284/135973
title: Water Temperature data collected during research cruise AT42-16 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1284187.v1
title: Gap analysis - potatoes occurrences

description: The species presence records
DOI: 10.7284/135974
title: TSG (Thermosalinograph) data collected during research cruise AT42-16 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1284172.v1
title: My published papers

description: my published papers
DOI: 10.6084/m9.figshare.1284172.v2
title: my files

description: my published papers
DOI: 10.6084/m9.figshare.1284172.v3
title: my files

description: my published papers
DOI: 10.6084/m9.figshare.1284172.v4
title: ABA biosynthesis defective mutants reduce some free amino acids accumulation under drought stress in tomato leaves in comparison with Arabidopsis plants tissues

description: drought stress
DOI: 10.6084/m9.figshare.1284172.v5
title: ABA biosynthesis defective mutants reduce some free amino acids accumulation under drought stress in tomato leaves in comparison with Arabidopsis plants tissues

description: drought stress
DOI: 10.6084/m9.figshare.1284172.v6
title: ABA biosynthesis defective mutants reduce some free amino acids accumulation under drought stress in tomato leaves in comparison with Arabidopsis plants tissues

description: drought stress
DOI: 10.6084/m9.figshare.1284172.v7
title: files

description: biochemistry
DOI: 10.6084/m9.figshare.1284172.v8
title: files

description: biochemistry
DOI: 10.6084/m9.figshare.1284172.v9
title: files

description: biochemistry
DOI: 10.6084/m9.figshare.1284172.v10
title: files

description: biochemistry
DOI: 10.6084/m9.figshare.1284142
title: A convenient [hydroxy(tosyloxy)iodo]benzene-mediated one-pot synthesis of 2-arylimidazo[2,1-<i>b</i>]benzothiazoles

description: Several 2-arylimidazo[2,1-<i>b</i>]benzothiazoles (<b>4</b>) have been conveniently synthesized in one-pot reactions <i>via</i> α-tosyloxylation of enolizable ketones (<b>1</b>) using [hydroxy(tosyloxy)iodo]benzene <b>2</b> in acetonitrile, followed by treatment with 2-amino-6-(substituted)benzothiazoles (<b>3</b>). The present protocol offers several advantages towards general access of 2-arylimidazo[2,1-<i>b</i>]benzothiazoles, including an intriguing alternative to the literature protocols, a readily available nontoxic reagent, operational simplicity and an environmentally benign procedure.
DOI: 10.6084/m9.figshare.1284172.v12
title: files

description: biochemistry
DOI: 10.6084/m9.figshare.1284142.v2
title: A convenient [hydroxy(tosyloxy)iodo]benzene-mediated one-pot synthesis of 2-arylimidazo[2,1-<i>b</i>]benzothiazoles

description: Several 2-arylimidazo[2,1-<i>b</i>]benzothiazoles (<b>4</b>) have been conveniently synthesized in one-pot reactions <i>via</i> α-tosyloxylation of enolizable ketones (<b>1</b>) using [hydroxy(tosyloxy)iodo]benzene <b>2</b> in acetonitrile, followed by treatment with 2-amino-6-(substituted)benzothiazoles (<b>3</b>). The present protocol offers several advantages towards general access of 2-arylimidazo[2,1-<i>b</i>]benzothiazoles, including an intriguing alternative to the literature protocols, a readily available nontoxic reagent, operational simplicity and an environmentally benign procedure.
DOI: 10.6084/m9.figshare.1284142.v1
title: A convenient [hydroxy(tosyloxy)iodo]benzene-mediated one-pot synthesis of 2-arylimidazo[2,1-<i>b</i>]benzothiazoles

description: Several 2-arylimidazo[2,1-<i>b</i>]benzothiazoles (<b>4</b>) have been conveniently synthesized in one-pot reactions <i>via</i> α-tosyloxylation of enolizable ketones (<b>1</b>) using [hydroxy(tosyloxy)iodo]benzene <b>2</b> in acetonitrile, followed by treatment with 2-amino-6-(substituted)benzothiazoles (<b>3</b>). The present protocol offers several advantages towards general access of 2-arylimidazo[2,1-<i>b</i>]benzothiazoles, including an intriguing alternative to the literature protocols, a readily available nontoxic reagent, operational simplicity and an environmentally benign procedure.
DOI: 10.6084/m9.figshare.1284097
title: Training Data

description: The training and control sequences as well as the motif IDs are compiled here.
DOI: 10.6084/m9.figshare.1284078
title: figfiles

description: bobert
DOI: 10.6084/m9.figshare.1284097.v1
title: Enhancer modeling uncovers transcriptional signatures of individual cardiac cell states in Drosophila

description: The training and control sequences as well as the motif IDs are compiled here.
DOI: 10.6084/m9.figshare.1284097.v3
title: Training Data

description: The training and control sequences as well as the motif IDs are compiled here.
DOI: 10.6084/m9.figshare.1284078.v1
title: figfiles

description: bobert
DOI: 10.6084/m9.figshare.1284097.v2
title: Training Data

description: The training and control sequences as well as the motif IDs are compiled here.
DOI: 10.6084/m9.figshare.1284078.v3
title: figfiles

description: bobert
DOI: 10.6084/m9.figshare.1284078.v2
title: figfiles

description: bobert
DOI: 10.6084/m9.figshare.1284022
title: A "developmental hourglass" in fungi

description: #PdTT Version 1.0 (January 2015)<br>#This program develops algorithms for Phylostratigraphy, dN/dS ratio, Transcriptome age index (TAI) and Transcriptome divergence index (TDI) analysis. #Please cite:<br>#Cheng X, Hui JHL, Lee YY, Law PTW, Kwan HS. 2015. A "developmental hourglass" in fungi. <em>Mol Biol Evol.</em> 32(6):1556-66. doi: 10.1093/molbev/msv047 Please read carefully the following before running the programs:<br>README_TAI.txt for phylostratigraphy analysis and transcriptome age index (TAI) calculation, and<br>README_TDI.txt for dN/dS ratio analysis and transcriptome divergence index (TDI) calculation. The algorithms are implemented in Perl. Please make sure that Perl (https://www.perl.org/) is properly installed on your computer. All source codes are included in this fileset. You can modify some of the codes to suit the purpose of your study.
DOI: 10.6084/m9.figshare.1284048
title: Draft Report: Male Circumcision in the UK, incidence and harms

description: An attempt to summarise and explain my research and findings: 15 pages plus references.
DOI: 10.6084/m9.figshare.1284048.v2
title: Draft Report: Male Circumcision in the UK, incidence and harms

description: An attempt to summarise and explain my research and findings: 15 pages plus references.
DOI: 10.6084/m9.figshare.1284022.v40
title: A 'developmental hourglass' in fungi

description: #PdTT Version 1.0 (January 2015)<br>#This program develops algorithms for Phylostratigraphy, dN/dS ratio, Transcriptome age index (TAI) and Transcriptome divergence index (TDI) analysis. #Please cite:<br>#Cheng X, Hui JHL, Lee YY, Kwan HS. 2015. A 'developmental hourglass' in fungi. Please read carefully the following before running the programs:<br>README_TAI.txt for phylostratigraphy analysis and transcriptome age index (TAI) calculation, and<br>README_TDI.txt for dN/dS ratio analysis and transcriptome divergence index (TDI) calculation. The algorithms are implemented in Perl. Please make sure that Perl (https://www.perl.org/) is properly installed on your computer. All source codes are included in this fileset. You can modify some of the codes to suit the purpose of your study.
DOI: 10.6084/m9.figshare.1284048.v1
title: Draft summary report on all research undertaken

description: An attempt to summarise and explain my research and findings: 15 pages plus references.
DOI: 10.6084/m9.figshare.1284022.v41
title: A 'developmental hourglass' in fungi.

description: #PdTT Version 1.0 (January 2015)<br>#This program develops algorithms for Phylostratigraphy, dN/dS ratio, Transcriptome age index (TAI) and Transcriptome divergence index (TDI) analysis. #Please cite:<br>#Cheng X, Hui JHL, Lee YY, Kwan HS. 2015. A 'developmental hourglass' in fungi. Molecular Biology and Evolution 2015; doi: 10.1093/molbev/msv047 Please read carefully the following before running the programs:<br>README_TAI.txt for phylostratigraphy analysis and transcriptome age index (TAI) calculation, and<br>README_TDI.txt for dN/dS ratio analysis and transcriptome divergence index (TDI) calculation. The algorithms are implemented in Perl. Please make sure that Perl (https://www.perl.org/) is properly installed on your computer. All source codes are included in this fileset. You can modify some of the codes to suit the purpose of your study.
DOI: 10.6084/m9.figshare.1284022.v42
title: A 'developmental hourglass' in fungi

description: #PdTT Version 1.0 (January 2015)<br>#This program develops algorithms for Phylostratigraphy, dN/dS ratio, Transcriptome age index (TAI) and Transcriptome divergence index (TDI) analysis. #Please cite:<br>#Cheng X, Hui JHL, Lee YY, Kwan HS. 2015. A 'developmental hourglass' in fungi. Molecular Biology and Evolution 2015; doi: 10.1093/molbev/msv047 Please read carefully the following before running the programs:<br>README_TAI.txt for phylostratigraphy analysis and transcriptome age index (TAI) calculation, and<br>README_TDI.txt for dN/dS ratio analysis and transcriptome divergence index (TDI) calculation. The algorithms are implemented in Perl. Please make sure that Perl (https://www.perl.org/) is properly installed on your computer. All source codes are included in this fileset. You can modify some of the codes to suit the purpose of your study.
DOI: 10.6084/m9.figshare.1283987
title: Desiccation resistance in Nebria

description: Water loss rates for 12 <em>Nebria </em>species<em> </em>and <em>Nippononebria campbelli </em>on Mt Rainier, under two temperature and humidity treatments.
DOI: 10.6084/m9.figshare.1283985
title: Critical thermal limits in Nebria

description: Critical thermal minimum and maximum for <em>Nebria </em>and <em>Nippononebria campbelli </em>on Mt Rainier, Washington, USA.
DOI: 10.6084/m9.figshare.1283987.v1
title: Desiccation resistance in Nebria

description: Water loss rates for 12 <em>Nebria </em>species<em> </em>and <em>Nippononebria campbelli </em>on Mt Rainier, under two temperature and humidity treatments.
DOI: 10.6084/m9.figshare.1283894
title: Ethenoadenine Precursor 7,8-dihydro-8-hydroxy-imidazo[2,1-i]purine dehydration

description: The reaction of chloroacetaldehyde with adenine to form ethenoadenine has been modelled: this is an intrinsic reaction coordinate at the 6-31G(d) level of theory using the wB97X-D functional in water. When chloroacetaldehyde reacts with adenine to form ethenoadenine the reaction can proceed by one of two routes dependent upon the orientation of the chloroacetaldehyde molecule with the adenine molecule. This model is based upon an orientation which would form the intermediate 7,8-dihydro-8-hydroxy-imidazo[2,1-i]purine. This model also uses an explicit water molecule in the elimination reaction.
DOI: 10.6084/m9.figshare.1283894.v1
title: Ethenoadenine Precursor 7,8-dihydro-8-hydroxy-imidazo[2,1-i]purine dehydration

description: The reaction of chloroacetaldehyde with adenine to form ethenoadenine has been modelled: this is an intrinsic reaction coordinate at the 6-31G(d) level of theory using the wB97X-D functional in water. When chloroacetaldehyde reacts with adenine to form ethenoadenine the reaction can proceed by one of two routes dependent upon the orientation of the chloroacetaldehyde molecule with the adenine molecule. This model is based upon an orientation which would form the intermediate 7,8-dihydro-8-hydroxy-imidazo[2,1-i]purine. This model also uses an explicit water molecule in the elimination reaction.
DOI: 10.6084/m9.figshare.1283896
title: East Lancashire Hospital Trust therapeutic circumcision and subsequent complications in different age groups

description: This file is a return provided under freedom of information from East Lancashire Hospitals NHS Trust showing circumcisions performed in 2011 and readmissions which occurred in up to 90 days post surgery, with diagnosis. I've used the diagnosis to analyse the results to show which appeared to be relevant and non relevant. This allows the calculation of complication rates in different age groups, showing that the group in which therapeutic circumcision is least likely to be necessary (note BAPS Su Anna Boddy says 'virtually never') is also the group which appears much more likely to suffer a significant complication. This is one of many returns from hospital trusts which suggest too many 'therapeutic' circumcisions may be being performed and helps to illustrate why this should be a concern both on the level of NHS resources and invididual/family impacts.
DOI: 10.6084/m9.figshare.1283892
title: Significant urological follow ups from NHS NTC in Heart of Birmingham over several years

description: This file shows cases of children who required urological surgery as a follow up to religious circumcision by the NHS - funded by Heart of Birmingham PCT (as was). As it shows that problems may present several years post circumcision, it's clear that this does not include all follow ups from the April 2005-March 2012 NTC series: some will have presented subsequent to the preparation of this file. Note some are more serious and resource intensive surgeries.
DOI: 10.6084/m9.figshare.1283893
title: NTCs funded by Heart of Birmingham April 2005-March 2012 with follow up surgeries

description: A summary sheet in PDF provided by Heart of Birmingham PCC (as was). It shows 8,212 infant religious circumcisions funded over 7 financial years with the cost of those surgeries (£757,125) and also the incidence of follow up urological surgeries in each year (note these are broken down with details in a separate file - see the West Midlands folder). This summary sheet also gives a snapshot of readmission data for both calendar year 2011 and FY 2011/12 showing no patients/episodes and total cost. Clearly many of these will not be relevant, but as NHS Oldham suggested around 77% emergency cases presenting in 30d of an NTC may be related, it's reasonable to assume many of these acute admissions will reference adverse effects of the circumcision. Note that this summary doesn't include the incidence/cost of visits to A&E/GP in 30 days post circumcision: this would be extra. See the file from Tower Hamlets in the London folder to get data on GP visits post NTC.
DOI: 10.6084/m9.figshare.1283869
title: Tom 11

description: "Przegląd Geopolityczny" (Geopolitival Review), Volume 11
DOI: 10.6084/m9.figshare.1283870
title: Heart of Birmingham hospital admissions within 30d of NHS NTC in F/Y 2011/12

description: A file provided by Heart of Birmingham PCT (as was) under freedom of information legislation. It was prepared for the author of this research and the information does not seem to have been collated or reviewed otherwise (although Birmingham Children's Hospital had raised the alarm some 2 y previously regarding significant complications seen in A&E, mainly infants). This file shows the early (up to 30 day) readmissions from religious infant circumcisions in financial year 2011-12 (N=1,359). It was generated by asking them to perform a query using the unique patient ID as a pivot. The data includes days between op and admission, primary and secondary diagnosis, primary and secondary procedure codes (where relevant), length of stay and the cost of the spell. It's difficult to analyse in pdf but HOB PCT refused the excel version so I have partially retyped into excel to make analysis possible. See in the West Midlands folder. We can say that 8 cases are almost definately circ complications (the're coded as urinary issue or 'complications of a procedure') but there are many more that may have been. It's useful to remember in analysing this data that Birmingham Children's Hospital verified data shows infant circumcision complications may present initially as something else - some verified cases presented with, for example, respiratory or gastric issues. The same things has been observed in data from Leeds. Researchers need therefore to be wary of assuming that analysis of presenting issue gives a full picture of NTC adverse effects. It doesn't.
DOI: 10.6084/m9.figshare.1283869.v1
title: Tom 11

description: "Przegląd Geopolityczny" (Geopolitival Review), Volume 11
DOI: 10.6084/m9.figshare.1283892.v1
title: Significant urological follow ups from NHS NTC in Heart of Birmingham over several years

description: This file shows cases of children who required urological surgery as a follow up to religious circumcision by the NHS - funded by Heart of Birmingham PCT (as was). As it shows that problems may present several years post circumcision, it's clear that this does not include all follow ups from the April 2005-March 2012 NTC series: some will have presented subsequent to the preparation of this file. Note some are more serious and resource intensive surgeries.
DOI: 10.6084/m9.figshare.1283893.v1
title: NTCs funded by Heart of Birmingham April 2005-March 2012 with follow up surgeries

description: A summary sheet in PDF provided by Heart of Birmingham PCC (as was). It shows 8,212 infant religious circumcisions funded over 7 financial years with the cost of those surgeries (£757,125) and also the incidence of follow up urological surgeries in each year (note these are broken down with details in a separate file - see the West Midlands folder). This summary sheet also gives a snapshot of readmission data for both calendar year 2011 and FY 2011/12 showing no patients/episodes and total cost. Clearly many of these will not be relevant, but as NHS Oldham suggested around 77% emergency cases presenting in 30d of an NTC may be related, it's reasonable to assume many of these acute admissions will reference adverse effects of the circumcision. Note that this summary doesn't include the incidence/cost of visits to A&E/GP in 30 days post circumcision: this would be extra. See the file from Tower Hamlets in the London folder to get data on GP visits post NTC.