cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.863771.1
title: Coral physiology data (Fv/Fm) on four collected coral species from six sites in the Red Sea from 2018 to 2020

description: This dataset contains measurements of coral physiology (Fv/Fm) during 18-hour acute thermal stress experiments, where temperatures were ramped up to 30, 33, 36, and 39 degrees Celsius. Four coral species (Acropora hemprichii, Pocillopora verrucosa, Porites lobata, and Stylophora pistillata) were sampled from six sites along the length of the Red Sea, down to Djibouti in the Gulf of Aden.
DOI: 10.26008/1912/bco-dmo.863786.1
title: Coral physiology data (chlorophyll a, symbiont densities) on four collected coral species from six sites in the Red Sea from 2018 to 2020

description: This dataset contains measurements of coral physiology (chlorophyll a and symbiont densities) following 18-hour acute thermal stress experiments, where temperatures were ramped up to 30, 33, 36, and 39 degrees Celsius. Four coral species (Acropora hemprichii, Pocillopora verrucosa, Porites lobata, and Stylophora pistillata) were sampled from six sites along the length of the Red Sea, down to Djibouti in the Gulf of Aden.
DOI: 10.26008/1912/bco-dmo.863800.1
title: Coral physiology data (visual bleaching) on four collected coral species from six sites in the Red Sea from 2018 to 2020

description: This dataset contains measurements of visual bleaching following 18-hour acute thermal stress experiments, where temperatures were ramped up to 30, 33, 36, and 39 degrees Celsius. Four coral species (Acropora hemprichii, Pocillopora verrucosa, Porites lobata, and Stylophora pistillata) were sampled from six sites along the length of the Red Sea, down to Djibouti in the Gulf of Aden.
DOI: 10.26008/1912/bco-dmo.852869.1
title: Neocalanus copepod egg production is described from the Northern Gulf of Alaska for Fall 2015, 2016, 2017

description: Neocalanus copepod egg production is described from the Northern Gulf of Alaska for Fall 2015, 2016,2017.
DOI: 10.26008/1912/bco-dmo.863240.1
title: Bottle sample data and water processing samples from CTD casts from the first cruise of SPIROPA project, R/V Neil Armstrong cruise AR29, to the New England Shelfbreak in April 2018.

description: Bottle sample data and water processing samples from CTD casts from the first cruise of SPIROPA project, R/V Neil Armstrong cruise AR29, to the New England Shelfbreak in April 2018.
DOI: 10.26008/1912/bco-dmo.805392.2
title: Video Plankton Recorder environmental sensor data from the first cruise of SPIROPA project aboard the R/V Neil Armstrong to the New England Shelfbreak in April, 2018

description: Video Plankton Recorder environmental sensor data from the first cruise of SPIROPA project aboard the R/V Neil Armstrong to the New England Shelfbreak in April, 2018
DOI: 10.26008/1912/bco-dmo.807119.3
title: CTD casts from the SPIROPA project from R/V Neil Armstrong cruise AR29 and R/V Thomas G. Thompson cruise TN368 to the New England Shelfbreak in 2018 and 2019

description: CTD casts from the first cruise and third cruises of the SPIROPA project. The first cruise (AR29), took place aboard the R/V Neil Armstrong in April 2018 and the third cruise (TN368) took place on the R/V Thomas G. Thompson cruise in July of 2019.
DOI: 10.26008/1912/bco-dmo.853440.1
title: ZooSCAN images of zooplankton collected during BATS MOCNESS tows during R/V Atlantic Explorer cruises AE1614, AE1712, AE1830, and AE1819 in the vicinity of the Bermuda Atlantic Time-series Study from 2016 to 2018

description: ZooSCAN images from BATS MOCNESS tows during R/V Atlantic Explorer cruises AE1614, AE1712, AE1830, and AE1819 in the vicinity of the Bermuda Atlantic Time-series Study (BATS) in July of 2016, 2017, and 2018 as well as October 2018 (eight casts in total, 63 discrete nets).  

These data were published in Maas et al. (2021).
DOI: 10.26008/1912/bco-dmo.854077.1
title: ZooSCAN biovolume to biomass from imaged zooplankton collected during MOCNESS tows during various R/V Atlantic Explorer cruises and small boat deployments in the Sargasso Sea betwen 2016 to 2019

description: ZooSCAN biovolume to biomass from the Sargasso Sea including locations in the vicinity of the Bermuda Atlantic Time-series Study (BATS). Samples were collected during MOCNESS tows during R/V Atlantic Explorer cruises between 2016 to 2019 (AE1614, AE1712, AE1830, AE1917, AE1918, AE1931) and a few small boat deployments.

These data were published in Maas et al. (2021) as Supplementary Table 1.
DOI: 10.26008/1912/bco-dmo.857891.1
title: ZooSCAN output from of imaged zooplankton collected during BATS MOCNESS tows during R/V Atlantic Explorer cruises AE1614, AE1712, AE1830, and AE1819 in the vicinity of the Bermuda Atlantic Time-series Study from 2016 to 2018

description: ZooSCAN output from of imaged zooplankton collected during BATS MOCNESS tows during R/V Atlantic Explorer cruises AE1614, AE1712, AE1830, and AE1819 in the vicinity of the Bermuda Atlantic Time-series Study from 2016 to 2018. These data were published in Maas et al. (2021).
DOI: 10.26008/1912/bco-dmo.855296.1
title: Prokaryote and eukaryote abundance in phytodetrital aggregates (PA), fecal aggregates (FA), and the ambient seawater from samples collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in Bermuda

description: Abundances of prokaryotic classes and eukaryotic orders and species found in phytodetrital aggregates (PA), fecal aggregates (FA), and the ambient seawater in the fall and spring seasons, as well as of species in DNA extraction negative controls. Abundance values are prior to (raw) and following rarefaction. These data were published in Neuer et al. (2021).
DOI: 10.26008/1912/bco-dmo.862499.1
title: Pore water geochemistry from sediments collected on cruise OC1703A aboard R/V Oceanus and cruise AT36 aboard R/V Atlantis

description: This dataset includes pore water geochemistry from sediments collected on cruise OC1703A aboard R/V Oceanus in March 2017 and on cruise AT36 aboard R/V Atlantis in July-August 2016. Sediment cores were collected using an MC-800 multicore and an MC-400 multicore.
DOI: 10.26008/1912/bco-dmo.862690.1
title: NCBI accession numbers describing 16S rRNA and 16S rRNA gene amplicon sequences from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703A

description: This dataset includes metadata and NCBI accession numbers describing 16S rRNA and 16S rRNA gene amplicon sequences from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703A.
DOI: 10.26008/1912/bco-dmo.828922.1
title: Sample information for 16S and 18S V4 amplicon sequencing of microbial communities in sinking particles and water column samples collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in Bermuda

description: Sample information for 16S and 18S V4 amplicon sequencing of phytodetrital aggregates, fecal aggregates, and water column at the Bermuda Atlantic Time-series Study (BATS) site. Particles were collected on the monthly sampling cruises affiliated with the BATS in fall 2017 (AE1718) and spring 2018 (AE1809) on the R/V Atlantic Explorer.  These data were published in Neuer et al. (2021).

Genetic sequences are available at the National Center for Biotechnology Information (NCBI) under BioProject PRJNA675293.
DOI: 10.26008/1912/bco-dmo.855320.1
title: Images corresponding to some of the samples that underwent 16S and 18S V4 amplicon sequencing of microbial communities in sinking particles collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in Bermuda

description: Images corresponding to some of the samples that underwent 16S and 18S V4 amplicon sequencing of microbial communities in sinking particles collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in Bermuda.  These data were published in Neuer et al. (2021).
DOI: 10.26008/1912/bco-dmo.858440.1
title: ATP and cell numbers in laboratory experiments with Thalassiosira weissflogii conducted in 2019

description: This dataset includes ATP and cell numbers from batch culture experiments with Thalassiosira weissflogii. ATP was measured with a new extraction and analytical protocol and cell numbers were determined using a Coulter Counter at three temperatures (15, 20, 25 degrees Celsius). Experiments were conducted in 2019. These data are published in Figure 3 of Bochdansky et al., 2021 (doi:10. 1002/lom3.10409)
DOI: 10.26008/1912/bco-dmo.750710.1
title: Coral mortality and growth in St. John, US Virgin Islands from 2006-2016 (RUI-LTREB project)

description: This study was carried out on shallow reefs along the south coast of St. John, which have been monitored since 1987, and studied since the 1950s. These aspects of community structure were studied at 5–6 sites at 5–9-m depth between Cabritte Horn and White Point Coral. This data captures mortality and growth in St. John, US Virgin Islands from 2006-2016.
DOI: 10.26008/1912/bco-dmo.750740.1
title: Coral cover, density, and recruits averages per site in St. John, US Virgin Islands from 2007-2016

description: This study was carried out on shallow reefs along the south coast of St. John, which have been monitored since 1987, and studied since the 1950s. Three aspects of the time-series analyses are utilized, and the study period exploited concurrent sampling of coral cover, coral recruitment, and the dynamics of small corals (colonies ≤ 40-mm diameter). These aspects of community structure were studied at 5–6 sites at 5–9-m depth between Cabritte Horn and White Point.
DOI: 10.26008/1912/bco-dmo.858423.1
title: ATP and cell numbers in laboratory experiments with Thalassiosira weissflogii conducted in 2018

description: This dataset includes ATP and cell numbers from batch culture experiments with Thalassiosira weissflogii. ATP was measured with a new extraction and analytical protocol and cell numbers were determined using a Coulter Counter. Experiments were conducted in 2018. These data are published in Figure 3 of Bochdansky et al., 2021 (doi:10. 1002/lom3.10409)
DOI: 10.26008/1912/bco-dmo.750771.1
title: Coral cover, density, and recruits averages per year in St. John, US Virgin Islands from 2007-2016

description: This study was carried out on shallow reefs along the south coast of St. John, which have been monitored since 1987, and studied since the 1950’s. Three aspects of the time-series analyses are utilized, and the study period exploited concurrent sampling of coral cover, coral recruitment, and the dynamics of small corals (colonies ≤ 40-mm diameter). These aspects of community structure were studied at 5–6 sites at 5–9-m depth between Cabritte Horn and White Point.
DOI: 10.26008/1912/bco-dmo.861206.1
title: Dissolved, inorganic nutrient data integrated with bottle data from R/V Endeavor cruise EN614 in May 2018

description: This dataset includes dissolved, inorganic nutrient data integrated with bottle data from R/V Endeavor cruise EN614 in May 2018.
DOI: 10.26008/1912/bco-dmo.861378.1
title: Dissolved, inorganic nutrient data integrated with bottle data from R/V Endeavor cruise EN640 in June-July 2019

description: This dataset includes dissolved, inorganic nutrient data integrated with bottle data from R/V Endeavor cruise EN640 in June and July 2019.
DOI: 10.26008/1912/bco-dmo.851382.1
title: Octocoral recruitment surveys on transects at 5 sites on the south shore of St. John, US Virgin Islands, 2014-2019.

description: This dataset includes species identifications and sizes from octocoral recruitment surveys conducted on transects at five sites on the south shore of St. John, US Virgin Islands from 2014-2019.
DOI: 10.26008/1912/bco-dmo.863815.1
title: Compilation of primary productivity measurements collected from 1983-2006 from the Ross Sea

description: This dataset is a compilation of primary productivity measurements from a total of 449 stations in the Ross Sea. Data were collected on multiple cruises conducted from 1983 to 2006 on USCGC Glacier, RVIB Nathaniel B. Palmer, R/V Polar Duke, USCGC Polar Star, and USCGC Polar Sea. These data were published in a variety of papers, including Wilson et al. (1986), Smith et al. (1999, 2000, 2013), and Nelson and Smith (1991).  Many of the productivity data are available within individual data reports available on BCO-DMO (e.g., AESOPS, CORSACS), but others were collected prior to the initiation of a centralized data center and hence are not available except in this dataset. Integrated station data are provided in the attached Supplemental File titled &quot;Integrated Water Column Station Data&quot; (.csv file). See the &quot;Supplemental Files&quot; section of the BCO-DMO dataset landing page for more information on the integrated station data.
DOI: 10.26008/1912/bco-dmo.809945.2
title: Winter survey data from Lake Erie from 2018-2020

description: Winter survey data from Lake Erie collected on USCGC NEAH BAY, CCGS Limnos and M/V Orange Apex during 2018, 2019 and 2020.
DOI: 10.26008/1912/bco-dmo.857184.1
title: Oxygen evolution data for macroalgae during photo physiology incubations for photosynthesis-irradiance curves from August to September 2017 (High latitude kelp dynamics)

description: Oxygen evolution data for macroalgae during photo physiology incubations, for generation of photosynthesis-irradiance curves. Run in the last week of a laboratory experiment testing the effects of pH, light availability and biotic interaction on coralline algae calcification and productivity. All algal individuals were collected on Aug 5, 2017 at Harris Island. Total experimental duration was 45d (Aug 7-Sept 21, 2017).
DOI: 10.26008/1912/bco-dmo.861111.1
title: Results from a study of physiological responses of Ulva lactuca to ocean acidification and nutrient enrichment

description: This dataset results from a study of physiological responses of Ulva lactuca to ocean acidification and nutrient enrichment. It includes measurements of growth, carbohydrates, protein, nitrate reductase activity, ammonium pool, nitrate pool, ammonium and nitrate uptake rates, Pmax, alpha, and Ik.
DOI: 10.26008/1912/bco-dmo.856598.1
title: Year-round variation in relative light intensity reaching the benthos on four coraline rocky reed sites in Sitka Sound, AK from 2017 to 2020

description: Year-round variation in relative light intensity reaching the benthos on four coralline rocky reef sites in Sitka Sound, Alaska. These four sites are Harris Island, Breast Island, Samsing Pinnacle, and Sandy Cove from 2017 to 2020.
DOI: 10.26008/1912/bco-dmo.856902.1
title: Environmental data from experimental aquaria during a laboratory experiment testing the effects of pH, light availability and biotic interaction on coralline algae calcification and productivity at the Sitka Sound Science Center in 2017

description: Environmental data from experimental aquaria (“tanks”) during a laboratory experiment testing the effects of pH, light availability, and biotic interaction on coralline algae calcification and productivity. These tests took place at the Sitka Sound Science Center (SSSC) from August 7, 2017, to September 21, 2017, with algal collection taking place on August 5, 2017.
DOI: 10.26008/1912/bco-dmo.857147.1
title: Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK. from 2017 - 2019 (High latitude kelp dynamics project)

description: This data represents in-situ seasonal changes in coralline algae growth rates. Algal individuals were collected from a crustose coralline algal genus and a geniculate coralline species from a subtidal rocky reef directly adjacent to Harris Is., Sitka Sound, AK in December 2017, July 2018, and January 2019. Crustose individuals targeted for collection were those that had a morphology that could easily be separated from the rocky substrate, often disc-shaped with distinct white growing edges. To measure linear growth, the coralline algae were imaged using a fluorescent lamp channel on a Ziess AxioZoom microscope at the UCSC Microscopy Center.
DOI: 10.26008/1912/bco-dmo.856663.1
title: Wet and buoyant weight measurements of macroalgae at the Sitka Sound Science Center (SSSC) from August to September 2017 (High latitude kelp dynamics project)

description: This data represents weight and buoyant weight measurements of macroalgae taken at the beginning and end of a laboratory experiment that tested the effects of pH, light availability and biotic interaction on coralline algae calcification and productivity. This experiment took place at the Sitka Sound Science Center (SSSC) in Sitka, Alaska with algal samples collected between August 5, 2017 and September 21, 2017.
DOI: 10.26008/1912/bco-dmo.857255.1
title: Total alkalinity incubation data for coralline algae from August to September 2017 at the Sitka Sound Science Center (SSSC) (High latitude kelp dynamics project)

description: Total alkalinity incubation data for coralline algae individuals and paired controls, run during the last week of a laboratory experiment testing the effects of pH, light availability and biotic interaction on coralline algae calcification and productivity.
DOI: 10.26008/1912/bco-dmo.862458.1
title: Model code for the EpiGen model used in Walworth et al. 2020 and example output

description: Model code and example model output for the EpiGen model used in Walworth et al. 2020. The EpiGen model is an individual-based model of adaptation modified from Fisher’s model in which a simulated population moves between a “new” and “ancestral” environment following a step function with varying frequencies. This model calculates the rate of adaptation of the population where adaption proceeds through both fast variation, low transmission and slow variation, high transmission (HT) modifications.
DOI: 10.26008/1912/bco-dmo.840629.2
title: Results of measurements of the oxidation of 15N supplied as ammonia, urea, putrescine or nitrite in samples collected from continental shelf waters west of the Antarctic Peninsula on cruise LMG1801 from January to February 2018

description: This dataset includes the results of measurements of the oxidation of 15N supplied as ammonia, urea, putrescine or nitrite in samples collected from continental shelf waters west of the Antarctic Peninsula of cruise LMG18-01.
DOI: 10.26008/1912/bco-dmo.862182.1
title: Helium isotope with helium and neon concentration data from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from September to October 2018

description: This dataset includes helium isotope, helium, and neon concentration data from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from September to October 2018.
DOI: 10.26008/1912/bco-dmo.855139.1
title: DOP concentration observations from the global ocean between 1990 and 2021 (DOP N2 fixation and export production project)

description: DOP (Dissolved Organic Phosphorus) concentration observations in the global ocean between 1990 and 2021 over multiple deployments. DOP concentrations in this study were calculated as the difference between TDP concentrations and PO43- concentrations of samples. For DOP concentrations reported here, TDP concentrations were measured by the ash/hydrolysis method based on Monaghan and Ruttenberg, 1999.
DOI: 10.26008/1912/bco-dmo.861133.2
title: Siderophore concentrations found in supernatants of Azotobacter vinelandii str. OP, Azotobacter chroococcum str. B3, and Azotobacter chroococcum str. NCIMB 8003 from laboratory experiments in 2015

description: Siderophore concentrations found in supernatants of Azotobacter vinelandii str. OP, Azotobacter chroococcum str. B3, and Azotobacter chroococcum str. NCIMB 8003 from laboratory experiments in 2015. These data were published in Zhang et al. (2019, Fig 6).
DOI: 10.26008/1912/bco-dmo.862220.1
title: Helium isotope with helium and neon concentration data from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from Oct-Nov 2018

description: This dataset includes helium isotope, helium, and neon concentration data from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from October to November 2018.
DOI: 10.26008/1912/bco-dmo.858513.2
title: Metabolic potential for heterotrophic utilization of a large array of organics by coccolithophores determined through experiments at Bigelow Laboratory for Ocean Sciences using BioLog Eco-plates

description: This dataset includes results from an experiment determining the metabolic potential for heterotrophic utilization of a large array of organics by coccolithophores. Experiments used the BioLog Eco-plates (BioLog, Haywood, CA, U.S.A.) and were conducted at Bigelow Laboratory for Ocean Sciences, East Boothbay, ME.
DOI: 10.26008/1912/bco-dmo.858771.1
title: Results from 14C-labeled uptake experiments determining uptake of specific dissolved organic compounds which showed high potential for osmotrophy

description: This dataset includes results for 14C-labeled uptake experiments determining uptake of specific dissolved organic compounds which showed high potential for osmotrophy. Experiments used the BioLog Eco-plates (BioLog, Haywood, CA, U.S.A.) and were conducted at Bigelow Laboratory for Ocean Sciences, East Boothbay, ME.
DOI: 10.26008/1912/bco-dmo.858771.2
title: Results from 14C-labeled uptake experiments determining uptake of specific dissolved organic compounds which showed high potential for osmotrophy

description: This dataset includes results for 14C-labeled uptake experiments determining uptake of specific dissolved organic compounds which showed high potential for osmotrophy. Experiments used the BioLog Eco-plates (BioLog, Haywood, CA, U.S.A.) and were conducted at Bigelow Laboratory for Ocean Sciences, East Boothbay, ME.
DOI: 10.26008/1912/bco-dmo.858513.1
title: Metabolic potential for heterotrophic utilization of a large array of organics by coccolithophores determined through experiments at Bigelow Laboratory for Ocean Sciences using BioLog Eco-plates

description: This dataset includes results from an experiment determining the metabolic potential for heterotrophic utilization of a large array of organics by coccolithophores. Experiments used the BioLog Eco-plates (BioLog, Haywood, CA, U.S.A.) and were conducted at Bigelow Laboratory for Ocean Sciences, East Boothbay, ME.
DOI: 10.26008/1912/bco-dmo.861154.1
title: Amphi-enterobactins and related siderophore concentrations found in Vibrio harveyi supernatants and pellets from laboratory experiments in 2017

description: Amphi-enterobactins and related siderophore concentrations found in Vibrio harveyi supernatants and pellets from laboratory experiments in 2017.  These data were published in McRose et al. (2018, Fig. 4).
DOI: 10.26008/1912/bco-dmo.861133.1
title: Siderophore concentrations found in supernatants of Azotobacter vinelandii str. OP, Azotobacter chroococcum str. B3, and Azotobacter chroococcum str. NCIMB 8003 from laboratory experiments in 2015

description: Siderophore concentrations found in supernatants of Azotobacter vinelandii str. OP, Azotobacter chroococcum str. B3, and Azotobacter chroococcum str. NCIMB 8003 from laboratory experiments in 2015. These data were published in Zhang et al. (2016, Fig 6).
DOI: 10.26008/1912/bco-dmo.861145.1
title: Siderophore concentrations found in supernatants of Rhodopseudomonas palustris str. CGA009 grown under different aerobic and anaerobic conditions from laboratory experiments in 2016

description: Siderophore concentrations found in supernatants of Rhodopseudomonas palustris str. CGA009 grown under different aerobic and anaerobic conditions from laboratory experiments in 2016. These data were published in Baars et al. (2018, Fig. 3).