cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3s4d3/5
title: COI alignment with Reference Sequences in MEGA format

description: Pythium (and select other oomycetes) included with COI sequences generated here. Sequences were obtained from NCBI.
DOI: 10.5061/dryad.3s4d3/6
title: COI Neighbor-joining Tree with Reference Sequences

description: PDF of neighbor-joining tree from alignment with Pythium and other oomycete reference sequences included.
DOI: 10.5061/dryad.630hf/1
title: Neuromorphic tactile stimulation patterns

description: Sequence of timestamps (in ms) of spikes that were delivered to the human median nerve (trial*.txt), resulting from a neuromorphic mechano-neuro-transduction process, and responses of human amputee in a 3AFC psychophysical protocol associated to such stimuli (DAS_3AFC_protocol.csv)
DOI: 10.5061/dryad.762b8/20
title: SM3_macrofossils_OK

description: Core SM3: % Plant macrofossil data
DOI: 10.5061/dryad.762b8/21
title: SM3_pollen_OK

description: Core SM3: Pollen count data
DOI: 10.5061/dryad.762b8/22
title: SM3_SCP_OK

description: Core SM3: Spheroidal carbonaceous particle data
DOI: 10.5061/dryad.762b8/23
title: SM3_testateamoebae_OK

description: Core SM3: % Testate amoeba data and water table reconstruction
DOI: 10.5061/dryad.7cr21/1
title: Janicke_et_al_2016_JEvolBiol_DATA

description: File encompasses three data sheets including (i) morphological data, (ii) behavioural data and (iii) per capita estimates of female fecundity.
DOI: 10.5061/dryad.b6c45/1
title: Beaver meadow ecosystem data package

description: Observations of beaver meadow ecosystems in five classes (chemical/nutrients, hydrology, plant community, weather, soils). See index.html in the .zip file for more information.
DOI: 10.5061/dryad.bg485/1
title: Data assortative mating (all)

description: The table contains all the data used in the study. Each row corresponds to a mating trial. The dataset is described in details in the README.txt file.
DOI: 10.5061/dryad.ck3b6/1
title: Raw flow cytometry data

description: Run information and fluorescence values of 1C and 2C peaks for external standards and unknown Neodiprion samples that were used to infer ploidy of unknown samples.
DOI: 10.5061/dryad.ck3b6/2
title: Sex ratio data for inbred and outbred families

description: Cocoon and adult ratio data for 13 outbred families and 8 inbred families that were used to test the prediction that inbreeding will result in an increase in the proportion males. Data were transformed prior to analysis by taking the arcsine of the square root of the proportion males.
DOI: 10.5061/dryad.ck3b6/3
title: Multi-line multi-generation sex ratio data

description: Adult emergence data (and proportion males) from nine different lab lines that were reared en masse in the lab for 3-5 generations (see Supplementary Table S1 in manuscript for additional information on lab lines). These data were used to test the prediction that inbreeding in the lab will result in an increase in the proportion of males. Prior to analysis, we took the arcsine of the square root of the proportion males.
DOI: 10.5061/dryad.ck3b6/4
title: Surivval data for inbred and outbred families

description: Survival data (# of eggs, larvae, cocoons, and adults; percent survival from egg to hatch, hatch to cocoon, cocoon to adult, egg to cocoon) from 14 outbred and 11 inbred families that were used to test the hypothesis that this species experiences inbreeding depression. Data were transformed prior to analysis (square root for progeny numbers and arcsine of the square root for survival rates).
DOI: 10.5061/dryad.ck3b6/5
title: Weight vs. fecundity

description: Cocoon mass (mg) and egg number from 15 females that were used to test the hypothesis that cocoon weight is a reliable predictor of female fecundity.
DOI: 10.5061/dryad.ck3b6/6
title: Cocoon weights for inbred and outbred families

description: Cocoon weights (in g) measured for 13 outbred and 9 inbred families that produced cocoons. Based on the distribution of cocoon weights within each family, we inferred the sex of each cocoon (cocoon weight is sexually dimorphic, with males weighing less than females). These data were used to test the prediction that inbred families would produce smaller female cocoons than outbred families (due to inbreeding depression).
DOI: 10.5061/dryad.ck3b6/7
title: Mating latency data

description: Latency to mating (sec) for individual pairs from two populations (KY and MI) and two cross types (inbred or outbred) that mated. These data were used to test the prediction that inbred pairs would have a greater latency to mating than outbred pairs (due to inbreeding avoidance).
DOI: 10.5061/dryad.db322/1
title: Sasson et al. 2016 data

description: Contains bug identification and morphometric data.
DOI: 10.5061/dryad.j3s5r/1
title: Commands used for data processing and analysis

description: Text file containing example commands used for data processing and analysis
DOI: 10.5061/dryad.j3s5r/2
title: Raw read count data

description: Tab-separated file with information on each locus for all 39 samples
DOI: 10.5061/dryad.j3s5r/3
title: R linear model metadata file

description: Tab-separated file containing metadata for use in the R linear models
DOI: 10.5061/dryad.j3s5r/4
title: Annotation information for loci

description: Tab-separated file with gene annotations and coordinates.  No coordinates or annotation are available for de novo assembled transcripts labelled "Unmap", "LycoD", or "PennD."  Genes starting with Solyc##x are unannotated regions with reference coordinates.
DOI: 10.5061/dryad.j3s5r/5
title: pileup_conv

description: Python script that converts pileup-format files to allele-specific SNP count text files.
DOI: 10.5061/dryad.j3s5r/6
title: Rmarkdown file for generating the Supplementary Methods, Figures and Tables

description: A Rmarkdown file that contains instructions for creating the supplementary information PDF with all supplementary figures, tables, and additional methods details.
DOI: 10.5061/dryad.j3s5r/7
title: R source file

description: R source file that accompanies the Rmarkdown file to perform differential expression calculations
DOI: 10.5061/dryad.jg8r0/1
title: Biotic and abiotic variables influencing plant litter breakdown in streams: a global study

description: Lat, absolute decimal latitude; T, mean annual temperature (ºC); SLA, specific leaf area (cm2/g); PD, plant phylogenetic diversity; pH, stream pH; SW, stream width (cm); kmc, litter breakdown rate in coarse-mesh bags for litter mixtures; kmf, litter breakdown rate in fine-mesh bags for litter mixtures; kmd, detritivore-mediated litter breakdown rate for litter mixtures; kac, litter breakdown rate in coarse-mesh bags for alder; kaf, litter breakdown rate in fine-mesh bags for alder; kad, detritivore-mediated litter breakdown rate for alder
DOI: 10.5061/dryad.jn4qq/1
title: Fournier-Leveletal2016_Data_Archive

description: Data and Analysis scripts in the R programming language supporting the article by Fournier-Level et al (2016) PNAS.
DOI: 10.5061/dryad.n3f4j/1
title: glucose tolerance data
DOI: 10.5061/dryad.nr8d8/2
title: intervention coverage dataset REDHOT

description: compound level data on participation in a focal screening approach (followed by focal mass drug administration), distribution of long lasting insecticide treated nets (LLINs) and Indoor Residual Spraying (IRS). The data can be linked to the intervention database using the compound and cluster identifiers.
DOI: 10.5061/dryad.s4t8k/1
title: data_template

description: This file includes information about the vaccination and infection loads offspring of single and multiple sired litters received and their respective spleen pathogen loads. Also it provides meassurements of individual body mass over the course of the infection.
DOI: 10.15146/r3f59q
title: Academic Libraries Follow-Up dataset

description: This is the data set to the Libraries Follow-Up only. This is the planned 1st follow-up for DataONE Libraries stakeholders
description: Quantitative research,

recoded survey items
description: 0830944
DOI: 10.15146/r3k016
title: Academic Libraries Follow-Up dataset

description: This is the data set to the Libraries Follow-Up only. This is the planned 1st follow-up for DataONE Libraries stakeholders
description: Quantitative research,

recoded survey items
description: 0830944
DOI: 10.5061/dryad.1mc01/1
title: read me file description

description: This file outlines the contents of the data files and provides a key for column headings.
DOI: 10.5061/dryad.1mc01/2
title: raw irradiance data

description: Contains subfolders with raw individual irradiance measures
DOI: 10.5061/dryad.1mc01/3
title: Site.meta.data

description: Contains meta data from sample sites
DOI: 10.5061/dryad.1mc01/4
title: Proportional.Opsin.Expression

description: Opsin Expression data converted to cone proportions
DOI: 10.5061/dryad.4t9f2/1
title: Summary of field data collected during Daphnia epidemics

description: All data are seasonal averages (September - November).  Lakes were sampled weekly or biweekly (every other week) during this period.  Key to columns: "Lake" = lake sampled; "Refuge" = depth of the hypolimnetic refuge (meters); "D.size" = average size of adult female D. dentifera (the index of fish predation; mm); "Chaob" = density of Chaoborus punctipennis (m-2); "Chaob2" = ln(Chaob); "D.dens" = density of Daphnia dentifera (cm-2); "C.dens" = density of Ceriodaphnia sp. (cm-2); "P.dens" = density of Daphnia pulicaria (cm-2); "D.freq" = frequency of Daphnia dentifera; "C.freq" = frequency of Ceriodaphnia sp.; "P.freq" = frequency of Daphnia pulicaria; "Amb.freq" = frequency of Daphnia ambigua; "Par.freq" = frequency of Daphnia parvula; "Dia.freq" = frequency of Diaphanosoma sp.; "Bos.freq" = frequency of Bosmina sp.; "Sca.freq" = frequency of Scaholeberis sp.; "Chy.freq" = frequency of Chydorus sp.; "Alo.freq" = frequency of Alona sp.; "O.freq" = frequency of all rare cladocerans pooled together; "Simpsons" = inverse Simpsons diversity index; "M.prev" = infection prevalence of Metschnikowia bicuspidata in Daphnia dentifera; "M.dens" = density of Daphnia dentifera infected with Metschnikowia bicuspidata (cm-2).
DOI: 10.5061/dryad.4t9f2/2
title: R script for univariate analyses

description: This R script recreate Figures 1-5 and S1 (all univariate analyses).
DOI: 10.5061/dryad.4t9f2/3
title: R script for path models

description: This R script recreates Figures 6 & 7 (path models).
DOI: 10.5061/dryad.674p4/1
title: WAG model of ML tree

description: Based on orthoMCL clustering, 100 single copy ortholog gene groups from five fungal species were selected randomly and aligned separately using MUSCLE version 3.8.31 with default parameters. All hundred Multiple Sequence Alignments (MSA) were concatenated. Then, 1000 bootstrap replicates were performed using SEQBOOT program in Phylip package version 3.696. The maximum-likelihood tree was constructed by PhyML V3.1 (--datatype aa --model WAG --bootstrap 1000) with 1000 bootstrap replicates to infer phylogenetic relationship of Sarocladium oryzae in relation to other Ascomycetes fungi (Magnaporthe oryzae, Fusarium graminearum, Acremonium chrysogenum, and Fusarium oxysporum). The consensus tree constructed using CONSENSE in Phylip package.
DOI: 10.5061/dryad.87035/1
title: Full dataset

description: The dataset includes all the variables used in the main text and in supplementary analyses.
DOI: 10.5061/dryad.8gp03.2
title: Data from: Social networks predict gut microbiome composition in wild baboons
DOI: 10.5061/dryad.8gp03.2/1.2
title: Sample_information

description: This file contains metadata on the samples for this study.
DOI: 10.5061/dryad.8gp03.2/2.2
title: Abundances_species_MetaPhlAn2

description: Table listing the relative abundance of microbial species in each sample inferred via MetaPhlAn 2.0.
DOI: 10.5061/dryad.8gp03.2/3.2
title: Abundances_species_denovo

description: Table listing species proportional abundance for each sample based on de novo contig assembly.
DOI: 10.5061/dryad.8gp03.2/4.2
title: Abundances_enzyme_orthologs

description: Table listing the relative abundance of enzyme gene orthologs in each sample.
DOI: 10.5061/dryad.8gp03.2/5.2
title: Mica_1yr_diet_BCdistance

description: Bray-Curtis diet composition dissimilarity matrix for female baboons in Mica's group
DOI: 10.5061/dryad.8gp03.2/6.2
title: Viola_1yr_diet_BCdistance

description: Bray-Curtis diet composition dissimilarity matrix for female baboons in Viola's group
DOI: 10.5061/dryad.8gp03.2/7.2
title: pedigree

description: Pedigree genetic relationships among all 48 subjects in Mica's and Viola's groups
DOI: 10.5061/dryad.9ng87/1
title: assembly

description: metagenome assembly
DOI: 10.5061/dryad.9ng87/10
title: tree_align
DOI: 10.5061/dryad.9ng87/2
title: COG annotation

description: COG annotation
DOI: 10.5061/dryad.9ng87/3
title: Marinobacter_sp

description: genome bin
DOI: 10.5061/dryad.9ng87/4
title: Oleispira_sp

description: genome bin
DOI: 10.5061/dryad.9ng87/5
title: RESULTS&DATA

description: 16s simper data and results, comparative metagenome data and results, cell density, rt-pcr results
DOI: 10.5061/dryad.9ng87/6
title: seqs_otus

description: 16s OTU table
DOI: 10.5061/dryad.9ng87/7
title: seqs_rep_set_aligned
DOI: 10.5061/dryad.9ng87/8
title: seqs_switch

description: 16s 454 data
DOI: 10.5061/dryad.ff893/1
title: Yale Y Replicate 1

description: Contains sequential images of Yale logo experimental treatment, replicate 1
DOI: 10.5061/dryad.ff893/2
title: Yale Y Replicate 2

description: Contains sequential images of Yale logo experimental treatment, replicate 2
DOI: 10.5061/dryad.ff893/3
title: Yale Y Replicate 3

description: Contains sequential images of Yale logo experimental treatment, replicate 3
DOI: 10.5061/dryad.ff893/4
title: Yale Y Replicate 4

description: Contains sequential images of Yale logo experimental treatment, replicate 4
DOI: 10.5061/dryad.hf50r/1
title: Mouse retina extracellular receptor-ligand biochemical screen

description: Biochemical screen for extracellular receptor-ligand interactions in the developing mouse retina. The extracellular domain (ECD) region of 126 cell surface or secreted proteins were tested for pairwise binding in a matrix. ECDs along the x-axis were C-terminally fused to the Fc region of human IgG1. ECDs along the y-axis were C-terminally fused to alkaline phosphatase (AP). Proteins were tested for binding using a high-throughput, ELISA-based binding assay. In this assay, ECD-AP receptor protein is captured on an ELISA plate using an anti-AP antibody.  Binding of ECD-Fc ligand protein to the ECD-AP receptor protein is detected by inclusion of an anti-Fc antibody conjugated to HRP. HRP activity is measured using O.D. 650 nm one hour following addition of substrate. Raw data values are reported.
DOI: 10.5061/dryad.j3s5r/10
title: Pollen-specific unilateral incompatibility differential gene expression results

description: Tab-separated text file showing results of differential expression on genes showing strong differential expression in the pollen during UI.
DOI: 10.5061/dryad.j3s5r/11
title: Pollen interspecific differential gene expresssion results

description: Tab-separated text file showing results of differential expression on genes showing expression differences between S. lycopersicum and S. pennellii pollen
DOI: 10.5061/dryad.j3s5r/12
title: Unilateral incompatibility differential gene expression raw results

description: Tab-separated file output from R script showing differential expression results from a comparison of style+pollen tissue during unilateral incompatibility to pollinated and unpollinated styles
DOI: 10.5061/dryad.j3s5r/13
title: Unilateral incompatibility differential gene expression filtered results
DOI: 10.5061/dryad.j3s5r/14
title: test2f.meta

description: Pollen-specific test R metadata file
DOI: 10.5061/dryad.j3s5r/15
title: test2g.meta

description: Style-specific test R metadata file
DOI: 10.5061/dryad.j3s5r/8
title: splitreads_tabulate

description: Python script that tabulates and collates the split-read pollen/style allele-based count files.
DOI: 10.5061/dryad.j3s5r/9
title: Style-specific unilateral incompatibility differential gene expression results

description: Tab-separated text file showing results of differential expression on genes showing strong differential expression in the style during UI.
DOI: 10.5061/dryad.jk206/1
title: Measured data of acceleration perturbation for WSTA

description: Measured data of the expriment with sequential acceleration perturbation. Data contain the speed of treadmill and the leg motion of human subjects.
DOI: 10.5061/dryad.nr8d8/1
title: REDHOT baseline survey 2011

description: Individual-level baseline data that were collected in preparation of a hotspot-targeted cluster randomized trial. Data include household and ecological characteristics, parasite prevalence by P. falciparum nPCR and antibody responses to P. falciparum antigens AMA-1 and MSP-1.
DOI: 10.5061/dryad.nr8d8/3
title: Intervention data REDHOT cluster randomized trial (2012)

description: Individual-level data from cross-sectional surveys prior to hotspot-targeted interventions and post-intervention. Data can be linked to intervention coverage data using compound and household identifiers. Data was collected in 2012.
DOI: 10.5061/dryad.nr8d8/5
title: Entomology data REDHOT

description: CDC light trap mosquito collections in 3 intervention and 3 control clusters. Number of female, male and total number of anopheles and culex mosquitoes is given per sampling round and compound. Up to 9 sampling rounds were completed per compound before (n=1) and after (n=8) the intervention.
DOI: 10.5061/dryad.1hv28/1
title: The SAMM data (RData)

description: The 2011-2012 data analysed in this paper. List of variables: POSIX.time: Date and hours of the counts;GroupTime: Group of time used for analysis (see paper);SeaState: Sea state at Beaufort scale;CloudCover: Cloud cover from 0 to 8;GlareSeverity: Glare severity from 1 to 3 (0 when no glare);GlareArea: Width of the glare in degree (from 0 to 220°, see paper);DistCoast: Distance from the coast in kilometers;AtlanticArea: Atlantic (1) vs. English Channel (0) area;Alcides: Number of auks counted within segments from both sides;SegmentLength: Length of the segment in meters.
DOI: 10.5061/dryad.1hv28/2
title: The ROMER data (RData)

description: The 2001-2002 data analysed in this paper. List of variables: MonthfromOctober: ID of month from October 2001, e.g. 2 stands for November 2001;Alcides: Number of auks counted within 5km segments from the side without glare;SeaState: Sea state at Beaufort scale;CloudCover: Cloud cover from 0 to 4;DistCoast: Distance from the coast in kilometers.
DOI: 10.5061/dryad.1hv28/3
title: Small pelagic fish data (Appendix S6)

description: The data used in Appendix S6 (from ICES).
DOI: 10.5061/dryad.1mc01/5
title: Raw.Opsin.Expression

description: Contains raw opsin expression data
DOI: 10.5061/dryad.1mc01/6
title: Irridance

description: Contains irradiance data used in the study
DOI: 10.5061/dryad.1mc01/7
title: Transmission

description: Contains transmission data used in the study
DOI: 10.5061/dryad.2hf06/1
title: kurtzToR-2

description: Dataset compiled from Kurtzman et al., 2011 to cell size and fermentation versatility (maximum number of sug-29 ars a species can ferment) in yeasts.
DOI: 10.5061/dryad.4fb1m/1
title: OTU table for bacteria (MEC-15-0975)
DOI: 10.5061/dryad.52064/1
title: Abdalodon matrix

description: TNT-formatted character matrix for parsimony analysis of early cynodont therapsids
DOI: 10.5061/dryad.711dc/2
title: SequenceData_NexusFile

description: Nexus file containing all sequence data (11 loci, all tenrec species plus three golden mole outgroups)
DOI: 10.5061/dryad.711dc/3
title: Supplementary Tables and Figures

description: Supplementary materials (K.M. Everson, V. Soarimalala, S.M. Goodman, & L.E. Olson, 2016)
DOI: 10.5061/dryad.8gp03.1
title: Data from: Social networks predict gut microbiome composition in wild baboons
DOI: 10.5061/dryad.8gp03.2/10.2
title: Mica_1yrproximity

description: Spatial proximity matrix for female baboons in Mica's group
DOI: 10.5061/dryad.8gp03.2/11.2
title: Viola_1yrproximity

description: Spatial proximity matrix for female baboons in Viola's group
DOI: 10.5061/dryad.8gp03.2/8.2
title: Mica_1yrgroom

description: Grooming network matrix for adult baboons in Mica's group
DOI: 10.5061/dryad.8gp03.2/9.2
title: Viola_1yrgroom

description: Grooming network matrix for adult baboons in Viola's group
DOI: 10.5061/dryad.9ng87/11
title: S-brine-Al_1.fq
DOI: 10.5061/dryad.9ng87/12
title: S-brine-Al_2.fq
DOI: 10.5061/dryad.9ng87/13
title: S-brine-PVC_1.fq
DOI: 10.5061/dryad.9ng87/14
title: S-brine-PVC_2.fq
DOI: 10.5061/dryad.9ng87/15
title: S-brine-T_1.fq
DOI: 10.5061/dryad.9ng87/16
title: S-brine-T_2.fq
DOI: 10.5061/dryad.9ng87/17
title: SNBW-Al_1.fq
DOI: 10.5061/dryad.9ng87/18
title: SNBWAL_2.fq
DOI: 10.5061/dryad.9ng87/20
title: SNBW-T_SZAIPI032904-22_1.fq
DOI: 10.5061/dryad.9ng87/9
title: tree
DOI: 10.5061/dryad.f2v0k/1
title: Pre- and post-LITT MRI acquisitions

description: This dataset comprises a total of 9 patients who underwent LITT therapy. For each patient, at least one pre-treatment acquisition and one post-treatment acquisition is available. Some patients have an acquisition from "during" therapy. Further details in paper and README file.
DOI: 10.5061/dryad.ff893/10
title: Grid_150_Replicate 2_(exp1_12)

description: Contains sequential images for replicate 2 of the grid with intersections spaced every 150 microns
DOI: 10.5061/dryad.ff893/11
title: Grid_450_Replicate 1 (exp2_4)

description: Contains sequential images of replicate 1 of the grid with intersections spaced every 450 microns.
DOI: 10.5061/dryad.ff893/12
title: Grid_450_Replicate 2 (exp2_6)

description: Contains sequential images of replicate 2 of the grid with intersections spaced every 450 microns.
DOI: 10.5061/dryad.ff893/13
title: Grid_700_Replicate 1_(exp1_5)

description: Contains sequential images of replicate 1 of the grid with intersections spaced every 700 microns
DOI: 10.5061/dryad.ff893/5
title: Yale Y Replicate 5

description: Contains sequential images of Yale logo experimental treatment, replicate 5
DOI: 10.5061/dryad.ff893/6
title: Yale Y Replicate 6

description: Contains sequential images of Yale logo experimental treatment, replicate 6
DOI: 10.5061/dryad.ff893/7
title: Yale Y Replicate 7

description: Contains sequential images of Yale logo experimental treatment, replicate 7
DOI: 10.5061/dryad.ff893/8
title: Yale Y Replicate 8

description: Contains sequential images of Yale logo experimental treatment, replicate 8
DOI: 10.5061/dryad.ff893/9
title: Grid_150_Replicate 1_(exp1_ZZ)

description: Contains sequential images for replicate 1 of the grid with intersections spaced every 150 microns
DOI: 10.5061/dryad.j25m2/1
title: Burgarella_2016_SNP_genotypes

description: Genotypes of 5206 SNPs from 224 candidate flowering genes for 174 Medicago truncatula accessions
DOI: 10.5061/dryad.j25m2/2
title: Burgarella_2016_SNP_context

description: Chromosome position, gene call, gene product and gene context (I= intron, C=codon, 0=intergenic, 3=3'UTR, 5=5'UTR) for 5206 SNPS from 224 candidate flowering genes in Medicago truncatula.
DOI: 10.5061/dryad.j25m2/4
title: Burgarella_2016_worldclim_data

description: Climate data for 174 Medicago truncatula accessions obtained from the Worldclim database (http://www.worldclim.org/)
DOI: 10.5061/dryad.jk206/2
title: Measured data of deceleration perturbation for WSTA

description: Measured data of the expriment with sequential deceleration perturbation. Data contain the speed of treadmill and the leg motion of human subjects.
DOI: 10.5061/dryad.jk206/3
title: Measured data of acceleration perturbation for Impulse method

description: Measured data of the expriment with intermittent acceleration perturbations. Data contain the speed of treadmill and the leg motion of human subjects.
DOI: 10.5061/dryad.jk206/4
title: Measured data of deceleration perturbation for Impulse method

description: Measured data of the expriment with intermittent deceleration perturbation. Data contain the speed of treadmill and the leg motion of human subjects.