cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xpmxzr
title: Occurrence Download

description: A dataset containing 658 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophelia pertusa"
 ]
}

 The dataset includes 658 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053400-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17085934
title: Soil Moisture and Soil Temperature dataset (2017 - 2023)

description: This dataset compiles all available soil moisture and soil temperature measurements collected in the Vallon de Nant. The data were contributed by multiple researchers and have undergone a standardized cleaning process. Detailed information about the data and station locations is provided in the accompanying Station_metadata and READ ME.

The dataset was compiled as part of a Master’s thesis: Drying Signals: What Soil Moisture reveals about Evaporation in the Vallon de Nant (VD, Swiss Alps) (Meret Weh, 2025).

 

READ ME – Soil Moisture and Soil Temperature Data

Files:

1)      Station Metadata:

Data Source: research project that collected the data

Location: Rough labelling  of the sensor location (Auberge, Chalet, Glacier, Chaux, Nant)

Station Nr.: Reference number of the station, used on climaps

Longitude/Latitude: LV03 and WGS84 coordinates

Elevation: m a.s.l 

Sensor Depth: cm

 

2)      Soil_moisture_cleaned_hourly.csv

Starts: 15.03.2017 – 00:00

Ends: 14.09.2023 – 12:00

Time step: 1 hour

Units: VWC %

Colums (25): Date, Time, sensors1, sensor2,…

 

3)      Soil_temperature_cleaned_hourly.csv

Starts: 15.03.2017 – 12:00

Ends: 14.09.2023 – 12:00

Time step: 1 hour

Units: °C

Colums (21): Date, Time, sensors1, sensor2,…

 

Sensor labelling: Location_depth_source (example: auberge_5_M)

M = Michelon

E = Eeckman

vR = von Roten

C = Ceperley

 

Notes: 

Missing data indicated with NA

chalet_5_M: records in 2020 very suspicious data that was not removed in this dataset but should be looked at carefully in future studies.  

 

Data cleaning

Soil moisture: 

1. Checking geophysical range: value had to be between 0 and 60 VWC

2. Spike removal: values where removed that differed significantly from neighbouring values

3. Visual inspection: removal of constant values or jumps or unplausible behaviour

Soil temperature: 

1. Checking geophysical range: value had to be between -30 and 50  °C 

2. Spike removal: values where removed that differed significantly from neighbouring values (sliding window approach)

3. Visual inspection: removal of constant values or jumps or unplausible behaviour
DOI: 10.5281/zenodo.17085935
title: Soil Moisture and Soil Temperature dataset (2017 - 2023)

description: This dataset compiles all available soil moisture and soil temperature measurements collected in the Vallon de Nant. The data were contributed by multiple researchers and have undergone a standardized cleaning process. Detailed information about the data and station locations is provided in the accompanying Station_metadata and READ ME.

The dataset was compiled as part of a Master’s thesis: Drying Signals: What Soil Moisture reveals about Evaporation in the Vallon de Nant (VD, Swiss Alps) (Meret Weh, 2025).

 

READ ME – Soil Moisture and Soil Temperature Data

Files:

1)      Station Metadata:

Data Source: research project that collected the data

Location: Rough labelling  of the sensor location (Auberge, Chalet, Glacier, Chaux, Nant)

Station Nr.: Reference number of the station, used on climaps

Longitude/Latitude: LV03 and WGS84 coordinates

Elevation: m a.s.l 

Sensor Depth: cm

 

2)      Soil_moisture_cleaned_hourly.csv

Starts: 15.03.2017 – 00:00

Ends: 14.09.2023 – 12:00

Time step: 1 hour

Units: VWC %

Colums (25): Date, Time, sensors1, sensor2,…

 

3)      Soil_temperature_cleaned_hourly.csv

Starts: 15.03.2017 – 12:00

Ends: 14.09.2023 – 12:00

Time step: 1 hour

Units: °C

Colums (21): Date, Time, sensors1, sensor2,…

 

Sensor labelling: Location_depth_source (example: auberge_5_M)

M = Michelon

E = Eeckman

vR = von Roten

C = Ceperley

 

Notes: 

Missing data indicated with NA

chalet_5_M: records in 2020 very suspicious data that was not removed in this dataset but should be looked at carefully in future studies.  

 

Data cleaning

Soil moisture: 

1. Checking geophysical range: value had to be between 0 and 60 VWC

2. Spike removal: values where removed that differed significantly from neighbouring values

3. Visual inspection: removal of constant values or jumps or unplausible behaviour

Soil temperature: 

1. Checking geophysical range: value had to be between -30 and 50  °C 

2. Spike removal: values where removed that differed significantly from neighbouring values (sliding window approach)

3. Visual inspection: removal of constant values or jumps or unplausible behaviour
DOI: 10.15468/dl.8zym7m
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitis cinerea",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053402-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.65x3vm
title: Occurrence Download

description: A dataset containing 6519 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Natator depressus"
 ]
}

 The dataset includes 6519 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053401-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74mvtz
title: Occurrence Download

description: A dataset containing 6519 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Natator depressus"
 ]
}

 The dataset includes 6519 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053403-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vn67nn
title: Occurrence Download

description: A dataset containing 6519 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Natator depressus"
 ]
}

 The dataset includes 6519 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053404-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.matv2t
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Chaiyaphum",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 539 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053405-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26023/x5g1-ssj6-450q
title: FLEXPART Modeling for DC3. Version 1.0

description: This dataset contains FLEXPART modeling imagery available as two movie files (.mov) and a single Power Point file (pptx). One movie corresponds to GOES-East Infrared imagery and the other contains GOES-East Water Vapor Imagery. The PPTX file is included in all orders. These images demonstrate the FLEXPART aged thunderstorm outflow forecast tool during the time period from 25 February to 5 March 2012.
DOI: 10.15468/dl.pf9s2m
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitis riparia x Vitis rupestris",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 144 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053406-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsp6sa
title: Occurrence Download

description: A dataset containing 41042945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample)",
 "Continent is North America",
 "Country is one of (Mexico, United States of America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 41042945 records from 2726 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076123-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmzmph
title: Occurrence Download

description: A dataset containing 106165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-68.07445 -17.69378,-55.16759 -29.01835,-47.35295 -28.55124,-45.32928 -25.16694,-40.01716 -22.54534,-35.75903 -15.08486,-37.20242 -1.76057,-45.8352 0.41199,-59.26825 -0.356,-64.41747 -6.88937,-68.07445 -17.69378))",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 106165 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000541-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14218456
title: Electrochemical Biosensing of Tuberculosis using CRISPR-Cas12a and redox-probe modified oligonucleotide

description: We have submitted the manuscript in HELIYON 

Manuscript. Number: HELIYON-D-24-20798R3 

Title: An electrochemical biosensor for the detection of tuberculosis specific DNA with CRISPR-Cas12a and redox-probe modified oligonucleotide. 

The dataset used in that study is available here.
DOI: 10.5281/zenodo.14218457
title: Electrochemical Biosensing of Tuberculosis using CRISPR-Cas12a and redox-probe modified oligonucleotide

description: We have submitted the manuscript in HELIYON 

Manuscript. Number: HELIYON-D-24-20798R3 

Title: An electrochemical biosensor for the detection of tuberculosis specific DNA with CRISPR-Cas12a and redox-probe modified oligonucleotide. 

The dataset used in that study is available here.
DOI: 10.15468/dl.3v2ryn
title: Occurrence Download

description: A dataset containing 8228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bouteloua gracilis (Kunth) Lag. ex Griffiths",
 "Geometry POLYGON((-141 24, -53 24, -53 83, -141 83, -141 24))"
 ]
}

 The dataset includes 8228 records from 178 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000545-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4fzpnj
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "Geometry POLYGON((-139.38338 69.50106,-138.76334 69.50106,-138.76334 69.6615,-139.38338 69.6615,-139.38338 69.50106))",
 "HasGeospatialIssue is false",
 "TaxonKey is Bubo scandiacus (Linnaeus, 1758)"
 ]
}

 The dataset includes 157 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000546-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14218539
title: HHIP's Dynamic Role in Epithelial Wound Healing Reveals a Potential Mechanism of COPD Susceptibility - Supplementary File 2

description: This is a collection of files necessary to reproduce a subset of the results discussed in the manuscript entilted HHIP’s Dynamic Role in Epithelial Wound Healing Reveals a Potential Mechanism of COPD Susceptibility by Deritei et al. (currently available on bioRxiv: https://www.biorxiv.org/content/10.1101/2024.09.05.611545v2.abstract).

Files are read by the dynmod software (https://github.com/Ravasz-Regan-Group/dynmod) to simulate the large Boolean model’s behaviors. These include the model in .dmms format (as well as .BooleanNet and .SBML formats, namely COPD_EMT_CellCycle_Apoptosis.dmms, COPD_EMT_CellCycle_Apoptosis_Fine.booleannet, the “in silico protocol” files for reproducing all figures (COPD_Figures.vex), re-running the validation experiments (Validation_Table_COPD_EMT_CellCycle_Apoptosis.vex) and running a python script that performs all validation statistical tests, generating a results list and regenerating Supplementary File 3 (Large Model Validation Script.py, ST5 - Large model validation.csv).

The _EXP folder contains exported figures necessary for generating the main manuscript Figure 4 and Supplementary Figures 3,4 and 5.
DOI: 10.5281/zenodo.14218540
title: HHIP's Dynamic Role in Epithelial Wound Healing Reveals a Potential Mechanism of COPD Susceptibility - Supplementary File 2

description: This is a collection of files necessary to reproduce a subset of the results discussed in the manuscript entilted HHIP’s Dynamic Role in Epithelial Wound Healing Reveals a Potential Mechanism of COPD Susceptibility by Deritei et al. (currently available on bioRxiv: https://www.biorxiv.org/content/10.1101/2024.09.05.611545v2.abstract).

Files are read by the dynmod software (https://github.com/Ravasz-Regan-Group/dynmod) to simulate the large Boolean model’s behaviors. These include the model in .dmms format (as well as .BooleanNet and .SBML formats, namely COPD_EMT_CellCycle_Apoptosis.dmms, COPD_EMT_CellCycle_Apoptosis_Fine.booleannet, the “in silico protocol” files for reproducing all figures (COPD_Figures.vex), re-running the validation experiments (Validation_Table_COPD_EMT_CellCycle_Apoptosis.vex) and running a python script that performs all validation statistical tests, generating a results list and regenerating Supplementary File 3 (Large Model Validation Script.py, ST5 - Large model validation.csv).

The _EXP folder contains exported figures necessary for generating the main manuscript Figure 4 and Supplementary Figures 3,4 and 5.
DOI: 10.15468/dl.bwq5cz
title: Occurrence Download

description: A dataset containing 20010 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-73.9946 9.36025,-73.36892 9.36025,-73.36892 9.83507,-73.9946 9.83507,-73.9946 9.36025))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20010 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000547-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zfn9f
title: Occurrence Download

description: A dataset containing 121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Locality is one of (Morro do Urubu, Parque Da Cidade)",
 "StateProvince is Sergipe"
 ]
}

 The dataset includes 121 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000551-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7jz5t
title: Occurrence Download

description: A dataset containing 18880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bromus inermis Leyss.",
 "Geometry POLYGON((-141 24, -53 24, -53 83, -141 83, -141 24))"
 ]
}

 The dataset includes 18880 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000550-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/t6k9kw5kmv.1
title: Alleviation of specific responses in the combined exposure of freshwater mussel Unio tumidus to psychoactive substances and microplastics

description: The environmentally relevant aquatic pollution is associated with the mixtures of xenobiotics, each in the low, picomolar to micromolar concentrations. Among these substances, the combinations of pharmaceuticals and microplastics (MP) have become an increasingly serious threat. The objective of this study was to track the specific and multi-stress responses of swollen river mussels (Unio tumidus) to the psychoactive substances caffeine (Caff) and chlorpromazine (Cpz) in the combined exposure with MP. The MP (1 mg•L-1, size 35–50 μm), Caff (20 µg•L-1), Cpz (12 ng•L-1) or their mixture (Mix) were administered to mussels for 14 days. The redox state, enzymes of biotransformation and apoptosis were analysed in the digestive gland. All exposures except Mix caused oxidative injury to lipids and proteins, accompanied by increased GSH and metallothionein levels, suppressed NAD+ and activation of GST (except Mix), and GTPase. MP had the lower particular impact. Specific responses to Caff were activation of Cyp450 (EROD) and cathepsin D, decreased GSH/GSSG ratio and prominent demetallation of metallothionein. The Cpz caused an increase in NADH/NAD+ ratio and caspase-3 inhibition. In the combined exposure, the specific responses to single xenobiotics were alleviated which was confirmed by discriminant analysis. The Mix-group was distinguished by the highest NADH/NAD+ and GSH/GSSG ratios, markedly increased caspase-3 activity accompanied by the decrease of protein carbonyl level and the highest IBR index, attesting to the negative cumulative effect of multi-stress exposure. The vulnerability of mussels to pM concentration of neuroleptic Cpz needs particular attention.
DOI: 10.17632/7hrspzt89y.1
title: Replisomes restrict SMC-mediated DNA-loop extrusion in vivo

description: unprocessed microscopy data for Figure 3
DOI: 10.17632/k5xmjjzsjt.1
title: Impact of COVID-19 on the Bullwhip Effect Across U.S. Industries

description: By integrating these advanced forecasting techniques, our study contributes to the literature by providing empirical evidence of their efficacy in a panel data context and highlighting their advantages over traditional models in capturing the dynamic and nonlinear nature of economic data.
DOI: 10.17632/rzskb4nc5m.1
title: Lampiran Hasil Evaluasi

description: LAMPIRAN HASIL EVALUASI USABILITY TESTING
DOI: 10.17632/6nxr35pmwp.1
title: A Case of Referral for Mohs Surgery for Suspected Keratoacanthoma Leading to a Diagnosis of Discoid Lupus Erythematosus

description: Pathology Photos
DOI: 10.17632/22jbd7dc57.1
title: environmental regulation and social- ecological welfare

description: This dataset is the data used in the article named "Incentive or punishment? - Differentiated strategies of environmental regulation and social-ecological welfare", and the specific data source has been explained in the article
DOI: 10.5281/zenodo.13984121
title: Arctic Moisture Intrusion Dataset v1 2/2 (2000-2022)

description: Moisture intrusion tracking algorithm output (2/2) from 2000-2022. Output contains binary files with associated ID numbers of moisture intrusion events and assoicated ERA5 total column water vapor and northward water vapor flux. 

Dataset 1/2 - 10.5281/zenodo.13971082
DOI: 10.5281/zenodo.13984122
title: Arctic Moisture Intrusion Dataset v1 2/2 (2000-2022)

description: Moisture intrusion tracking algorithm output (2/2) from 2000-2022. Output contains binary files with associated ID numbers of moisture intrusion events and assoicated ERA5 total column water vapor and northward water vapor flux. 

Dataset 1/2 - 10.5281/zenodo.13971082
DOI: 10.17632/5w2zg5jn27.1
title: Deep learning enhances the prediction of HLA class I presented CD8+ T cell epitopes in foreign pathogens

description: Datasets and code to reproduce results. Models are included in the code.zip. Code is also provided on github: https://github.com/jwohlwend/munis
DOI: 10.17632/kng34m2cgb.2
title: CTD and LADCP measurements in the Vidal Channel during cruise 94 of the R/V Akademik Mstislav Keldysh in 2024

description: A detailed CTD/LADCP survey in the Vidal Channel (Western Tropical Atlantic) was carried out during cruise 94 of the R/V “Akademik Mstislav Keldysh” in January, 2024. The main objective of this survey was to measure abyssal gravity currents of Antarctic Bottom Water and to estimate its transport to the Northwest Atlantic. The stations were located along the entire channel from 12°N to 17N. A total of 30 full water depth stations (down to the bottom) were performed in the Vidal Channel. The lowered system included the Conductivity, Temperature, and Depth (CTD) profiler Idronaut Ocean Seven 320 and Lowered Acoustic Current Doppler Profiler (LADCP) Teledyne RD Instruments WorkHorse Monitor 307.2 kHz with an external battery package. An additional AML3 LGR autonomous CTD probe with high accuracy sensors was used to validate the Idronaut CTD probe. The velocity profiler was set in the narrowband mode, which increases the profiling range in comparison with the broadband mode and allows more reliable processing of the raw data. We set 30 vertical bins of 8 m each with 1.76 m blank distance immediately below the transducer. The LADCP compass was calibrated before the cruise in the down looking mode according to the standard procedure. The raw data were processed using the LDEO Software version IX_14. We stopped the casts at a distance of 5 m above the bottom using the altimeter (model Valeport VA500) and pinger of the Benthos Co. The combined use of a pinger and an altimeter allowed us to safely approach the bottom even in conditions of rough bottom topography. A 6000-m sea cable allowed measurements at any point of the channel. Each station took approximately 4 hours (the descent and ascent rates of the CTD and LADCP profilers were approximately 1 m/s); the entire survey was performed from January 4 to January 14, 2024.
DOI: 10.17632/n7p4rbcssg.1
title: Sub-African Data

description: Contains carbon emission data for sub-African countries.
DOI: 10.15468/dl.jr65uu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-74.7791448270171 7.12515263725534,-74.7105078673477 7.12515263725534,-74.7105078673477 7.24620621981674,-74.7791448270171 7.24620621981674,-74.7791448270171 7.12515263725534))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000553-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8zspt
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Kazakhstan",
 "OccurrenceStatus is Present",
 "TaxonKey is Gymnospermium alberti (Regel) Takht."
 ]
}

 The dataset includes 30 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000555-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.