cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12094263
title: Intralesional corticosteroid injection as an effective treatment method for oral lesions: a meta-analysis

description: Intralesional corticosteroid injection (ICSI) is known as one of the main methods used for treating a wide range of lesions. It also results in a high concentration of drugs at lesion sites, with minimal systemic absorption. Thus, this study aimed to provide a review of the intralesional corticosteroid injection (ICSI) indications in the treatment of oral lesions. To this end; relevant key words were searched in the databases of PubMed, Google Scholar, Scopus, ScienceDirect, and UpToDate in the present study. Accordingly, the results of a total number of 62 case reports or case series articles were used in this study and the positive therapeutic effects of intralesional corticosteroid injection (ICSI) in 23 common oral lesions were reported. The most common type of intralesional steroid in the treatment of oral lesions was triamcinolone. No significant difference was also observed in terms of pain in patients following the use of steroid alone or in combination with anesthetic agents; moreover, the reported side effects of this method were exceptionally rare and transient. It was concluded that the intralesional corticosteroid injection (ICSI) could be one of the effective therapeutic methods with no significant problems in many oral lesions such as inflammatory, immunologic, and vascular ones due to its higher therapeutic effects than other topical forms of steroids and fewer side effects than systemic corticosteroid.
DOI: 10.6084/m9.figshare.12094266.v1
title: Higher increase degree of FGF21 post long-term interdisciplinary weight loss therapy preserves the free fat mass and rest metabolic rate in adolescents with obesity

description: ABSTRACT Objective Fibroblast growth factor 21 (FGF21) is among the activators that can stimulate thermogenesis in the white adipose tissue and brown adipose tissue. People with obesity have elevated blood levels of FGF21, but also develop resistance to its action, impairing its beneficial role. Inversely, clinical treatments to weight loss has been pointed out as an important therapy for increasing and recovering sensitivity to FGF21. The aim was to analyse the effect of long-term weight loss interdisciplinary intervention on FGF21 and body composition. Subjects and methods Eighty-six post-pubertal obese adolescents (14-19 years-old), were submitted to 20 weeks of weight loss therapy (clinical, nutritional, psychological and physical exercise support). Anthropometric measures, body composition and rest metabolic rate (RMR) by bioelectrical impedance, and serum FGF21 sample by ELISA were evaluated. The adolescents were grouped according to FGF21 individual delta variations after therapy: Higher Increase (HI); lower increase (LI); lower decrease (LD); higher decrease (HD). Results All groups present weight loss. Only in FGF21 ≥ 76,5 pg/mL variation the free-fat-mass and rest metabolic rate were preserved and to others group these variables were significantly reduced. Conclusion High increase in FGF21 can contribute to preservation of FFM and RMR after weight loss therapy, could have important implications for energy balance regulation. Future studies are necessary to continue determining the role of magnitude effects of FGF21 levels in obesity to improve clinical practice, especially in paediatrics population.
DOI: 10.6084/m9.figshare.12094263.v1
title: Intralesional corticosteroid injection as an effective treatment method for oral lesions: a meta-analysis

description: Intralesional corticosteroid injection (ICSI) is known as one of the main methods used for treating a wide range of lesions. It also results in a high concentration of drugs at lesion sites, with minimal systemic absorption. Thus, this study aimed to provide a review of the intralesional corticosteroid injection (ICSI) indications in the treatment of oral lesions. To this end; relevant key words were searched in the databases of PubMed, Google Scholar, Scopus, ScienceDirect, and UpToDate in the present study. Accordingly, the results of a total number of 62 case reports or case series articles were used in this study and the positive therapeutic effects of intralesional corticosteroid injection (ICSI) in 23 common oral lesions were reported. The most common type of intralesional steroid in the treatment of oral lesions was triamcinolone. No significant difference was also observed in terms of pain in patients following the use of steroid alone or in combination with anesthetic agents; moreover, the reported side effects of this method were exceptionally rare and transient. It was concluded that the intralesional corticosteroid injection (ICSI) could be one of the effective therapeutic methods with no significant problems in many oral lesions such as inflammatory, immunologic, and vascular ones due to its higher therapeutic effects than other topical forms of steroids and fewer side effects than systemic corticosteroid.
DOI: 10.6084/m9.figshare.12094254
title: Agreement between equations-estimated resting metabolic rate and indirect calorimetry-estimated resting metabolic rate in low-income obese women

description: ABSTRACT Objectives Indirect calorimetry is established as a gold standard to determine the resting metabolic rate (RMR), however, its clinical use is limited, especially in low-income settings. Thus, the use of predictive equations appear as an alternative to estimate the RMR, but its precision is debatable, especially in obese individuals and in populations without specifically developed equations. To evaluate the agreement between the RMR estimated by equations and by indirect calorimetry in low-income obese women. Subjects and methods A cross-sectional study with adult and obese women, which estimated the RMR by indirect calorimetry and compared with 13 predictive equations using the concordance correlation coefficient, root mean square error (RMSE) and Bland-Altman methods. The maximum allowed differences were predefined as 10%. Results No equation presented its confidence intervals for the Bland-Altman limits of agreement inside the predefined acceptable range. The Harris-Benedict equation achieved better agreement (bias of 2.9% and RMSE of 274.3kcal) whereas the Henry-Rees equation achieved better precision (42.3% of the sample within the 10% maximum allowed difference). Conclusion None of the studied equations satisfactorily estimated the RMR estimated by indirect calorimetry. In the absence of specific equations for this population, the use of the Harris-Benedict and Henry-Rees equations could be considered.
DOI: 10.6084/m9.figshare.12094257.v1
title: Health education in Aedes aegypti: case study

description: ABSTRACT Objectives: Reporting the experience of health education regarding Aedes aegypti in the Federal District. Methods: This is a case report, with descriptive approach, about the experience of nursing practice with education actions against the Aedes aegypti in communities of the Federal District, carried out between 2015 and 2018. Subjects of the research were undergraduate students in nursing, healthcare professionals, and the community. Results: There have been 24 educational interventions against Aedes aegypti, adapted to the needs of each population, using a “giant” sculpture of the mosquito, theater performances, lectures, booklets, and home visits. Conclusions: The project trained teachers, healthcare professionals, graduate students in nursing, and the community through the empowerment of this population, aiming at combating the Aedes aegypti vector.
DOI: 10.6084/m9.figshare.12094245
title: [DNA quantification and genotyping of biopsies obtained from Gyr and Girolando in vitro produced bovine embryos]

description: ABSTRACT Embryo biopsy associated with genotyping allows genomic information before embryo transfer. In this study, blastocyst biopsy samples from embryos transferred to recipients (n= 47) were evaluated, under the hypothesis that breed (Gyr or Girolando), embryonic stage (blastocyst or expanded blastocyst) and competence to establish pregnancy (positive or negative) would affect the quantity and DNA quality of samples. DNA was extracted, amplified, quantified by electropherogram and genotyped. The parameter call rate (CR) was used to measure the quality of genotyping. DNA concentration of 86.07±171.66ng/μl, and CR 0.73±0.17 was obtained. CR did not vary according to the amount of DNA in the samples. The variables breed and embryonic stage had no influence on DNA concentration or CR. There was pregnancy effect on the CR (P= 0.0187), but since there was a higher CR in the samples from the negative pregnancy group, it was not possible to associate this parameter with the embryonic quality. We conclude that the breed and embryo quality do not affect the evaluated parameters in embryonic samples. Embryos with higher chances of implantation do not reflect high quality in embryo biopsy genotyped samples.
DOI: 10.6084/m9.figshare.12094254.v1
title: Agreement between equations-estimated resting metabolic rate and indirect calorimetry-estimated resting metabolic rate in low-income obese women

description: ABSTRACT Objectives Indirect calorimetry is established as a gold standard to determine the resting metabolic rate (RMR), however, its clinical use is limited, especially in low-income settings. Thus, the use of predictive equations appear as an alternative to estimate the RMR, but its precision is debatable, especially in obese individuals and in populations without specifically developed equations. To evaluate the agreement between the RMR estimated by equations and by indirect calorimetry in low-income obese women. Subjects and methods A cross-sectional study with adult and obese women, which estimated the RMR by indirect calorimetry and compared with 13 predictive equations using the concordance correlation coefficient, root mean square error (RMSE) and Bland-Altman methods. The maximum allowed differences were predefined as 10%. Results No equation presented its confidence intervals for the Bland-Altman limits of agreement inside the predefined acceptable range. The Harris-Benedict equation achieved better agreement (bias of 2.9% and RMSE of 274.3kcal) whereas the Henry-Rees equation achieved better precision (42.3% of the sample within the 10% maximum allowed difference). Conclusion None of the studied equations satisfactorily estimated the RMR estimated by indirect calorimetry. In the absence of specific equations for this population, the use of the Harris-Benedict and Henry-Rees equations could be considered.
DOI: 10.6084/m9.figshare.12094245.v1
title: [DNA quantification and genotyping of biopsies obtained from Gyr and Girolando in vitro produced bovine embryos]

description: ABSTRACT Embryo biopsy associated with genotyping allows genomic information before embryo transfer. In this study, blastocyst biopsy samples from embryos transferred to recipients (n= 47) were evaluated, under the hypothesis that breed (Gyr or Girolando), embryonic stage (blastocyst or expanded blastocyst) and competence to establish pregnancy (positive or negative) would affect the quantity and DNA quality of samples. DNA was extracted, amplified, quantified by electropherogram and genotyped. The parameter call rate (CR) was used to measure the quality of genotyping. DNA concentration of 86.07±171.66ng/μl, and CR 0.73±0.17 was obtained. CR did not vary according to the amount of DNA in the samples. The variables breed and embryonic stage had no influence on DNA concentration or CR. There was pregnancy effect on the CR (P= 0.0187), but since there was a higher CR in the samples from the negative pregnancy group, it was not possible to associate this parameter with the embryonic quality. We conclude that the breed and embryo quality do not affect the evaluated parameters in embryonic samples. Embryos with higher chances of implantation do not reflect high quality in embryo biopsy genotyped samples.
DOI: 10.6084/m9.figshare.12094209
title: Untitled Item

description: spatial statistics<br>
DOI: 10.6084/m9.figshare.12094209.v2
title: Untitled Item

description: spatial statistics<br>
DOI: 10.6084/m9.figshare.12094209.v1
title: Untitled Item

description: spatial statistics<br>
DOI: 10.6084/m9.figshare.12094116
title: SARS-CoV-2 Codon, Codon Pair and Dinucleotide Metrics and Workflow

description: Codon, codon pair and dinucleotide usage frequences for SARS-CoV-2 compared to other coronaviruses and host species and tissues. Codon and codon pair metrics including relative synonymous codon usage, codon pair score and codon pair bias. 75 nt sequences around coronaviral frameshift site for MFE analysis.<br>
DOI: 10.6084/m9.figshare.12094095
title: Data for Steell et al. paper on Panulirus argus heart rate & activity under artificial light at night.docx

description: These data accompany a study titled “Artificial light at night does not induce a cardiac stress response or alter behaviour in Caribbean spiny lobster (Panulirus argus): insights from heart rate and acceleration biologgers”, submitted to the journal Conservation Physiology in April 2020, authored by S. Clay Steell, Steven J. Cooke, and Erika J. Eliason.
DOI: 10.6084/m9.figshare.12094095.v1
title: Data for Steell et al. paper on Panulirus argus heart rate & activity under artificial light at night.docx

description: These data accompany a study titled “Artificial light at night does not induce a cardiac stress response or alter behaviour in Caribbean spiny lobster (Panulirus argus): insights from heart rate and acceleration biologgers”, submitted to the journal Conservation Physiology in April 2020, authored by S. Clay Steell, Steven J. Cooke, and Erika J. Eliason.
DOI: 10.6084/m9.figshare.12093912
title: example.txt

description: This is an example<br>
DOI: 10.6084/m9.figshare.12093912.v1
title: example.txt

description: This is an example<br>
DOI: 10.6084/m9.figshare.12093912.v2
title: example.txt

description: This is an example<br>
DOI: 10.6084/m9.figshare.12093858
title: Molecular biodiversity of Iranian shallow water sponges

description: Despite their importance, our knowledge of the biodiversity and phylogeography of sponges in the Persian Gulf and adjacent waters is largely unexplored. Such knowledge, however, is necessary to better understand those patterns and processes that generated and maintained sponge diversity in this largely separated marginal sea, and to create a foundation for future exploration of the marine natural resources in this area. Recently, several expeditions resulted in the so far largest sponge collection of the Persian Gulf and Gulf of Oman, which now led towards the most comprehensive molecular taxonomic inventory of sponges in this region to date. We analyzed a total of 143 samples molecularly and identified 52 operational taxonomic units (OTUs) based on 28S and CO1. Additional molecular comparison with the Red Sea sponge fauna indicate a strong differentiation and high levels endemism between the Persian Gulf and the Red Sea respectively, supporting findings for other marine phyla.
DOI: 10.6084/m9.figshare.12093882
title: Datasets for Cornet, Magain et al. Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.

description: <b>Multiple Sequences Alignments </b>(FASTA file format) for the various trees in the study by Cornet, Magain et al. <i>Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.</i><br><b>Individual genes (OGs)</b>- 1160 OGs x 16 taxa: prot MSAs (= single-copy OGs)- 378 OGs x 28 taxa: prot and nucl MSAs (= neighbor genes)<br>- 99 OGs x 16 taxa: prot and nucl MSAs (= 28 CORs)- 90 OGs x 28 taxa: prot and nucl MSAs (= 25 CORs)<br><b>Supermatrices (concats)</b>- 1160 OGs x 16 taxa: 100 jackknife (JK) replicates (prot MSAs and trees)- 378 OGs x 28 taxa: prot and nucl MSAs<br>- 99 OGs x 16 taxa: prot and nucl MSAs- 90 OGs x 28 taxa: prot and nucl MSAs<br>
DOI: 10.6084/m9.figshare.12093858.v1
title: Molecular biodiversity of Iranian shallow water sponges

description: Despite their importance, our knowledge of the biodiversity and phylogeography of sponges in the Persian Gulf and adjacent waters is largely unexplored. Such knowledge, however, is necessary to better understand those patterns and processes that generated and maintained sponge diversity in this largely separated marginal sea, and to create a foundation for future exploration of the marine natural resources in this area. Recently, several expeditions resulted in the so far largest sponge collection of the Persian Gulf and Gulf of Oman, which now led towards the most comprehensive molecular taxonomic inventory of sponges in this region to date. We analyzed a total of 143 samples molecularly and identified 52 operational taxonomic units (OTUs) based on 28S and CO1. Additional molecular comparison with the Red Sea sponge fauna indicate a strong differentiation and high levels endemism between the Persian Gulf and the Red Sea respectively, supporting findings for other marine phyla.
DOI: 10.6084/m9.figshare.12093882.v2
title: Datasets for Cornet, Magain et al. Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.

description: <b>Multiple Sequences Alignments </b>(FASTA file format) for the various trees in the study by Cornet, Magain et al. <i>Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.</i><br><b>Individual genes (OGs)</b>- 1160 OGs x 16 taxa: prot MSAs (= single-copy OGs)- 378 OGs x 28 taxa: prot and nucl MSAs (= neighbor genes)<br>- 99 OGs x 16 taxa: prot and nucl MSAs (= 28 CORs)- 90 OGs x 28 taxa: prot and nucl MSAs (= 25 CORs)<br><b>Supermatrices (concats)</b>- 1160 OGs x 16 taxa: 100 jackknife (JK) replicates (prot MSAs and trees)- 378 OGs x 28 taxa: prot and nucl MSAs<br>- 99 OGs x 16 taxa: prot and nucl MSAs- 90 OGs x 28 taxa: prot and nucl MSAs<br>
DOI: 10.6084/m9.figshare.12093882.v1
title: Datasets for Cornet, Magain et al. Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.

description: <b>Multiple Sequences Alignments </b>(FASTA file format) for the various trees in the study by Cornet, Magain et al. <i>Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: a case study with Cyanobacteria.</i><br><b>Individual genes (OGs)</b>- 1160 OGs x 16 taxa: prot MSAs (= single-copy OGs)- 378 OGs x 28 taxa: prot and nucl MSAs (= neighbor genes)<br>- 99 OGs x 16 taxa: prot and nucl MSAs (= 28 CORs)- 90 OGs x 28 taxa: prot and nucl MSAs (= 25 CORs)<br><b>Supermatrices (concats)</b>- 1160 OGs x 16 taxa: 100 jackknife (JK) replicates (prot MSAs and trees)- 378 OGs x 28 taxa: prot and nucl MSAs<br>- 99 OGs x 16 taxa: prot and nucl MSAs- 90 OGs x 28 taxa: prot and nucl MSAs<br>
DOI: 10.6084/m9.figshare.12093687
title: Model weights for the MRCNN model pre-trained with COCO

description: This dataset contains Model weights for the MRCNN model pre-trained with COCO.<br>
DOI: 10.6084/m9.figshare.12093693
title: Table S2

description: Raw Data for Figure 3. <b>Monte Carlo simulations of two species competition. </b><b><br></b>Colonization of free habitat started from single individuals of each species.<b> </b>The number of Monte Carlo simulations equals to 200. Parameter P<sub>1</sub> reflects competitivness of the Species 1 and parameter P<sub>2</sub> reflects competitivness of the Species 2.(<b>A, B</b>) Competitive exclusion of the recessive Species 2 was observed in all cases. Species differences in competitivness equal to 100% (A) and 32% (B). (<b>C-D</b>) Stable coexistence of competing species was observed in all cases. Species differences in competitivness equal to 31% (C) and 0% (D).<b><br></b><b><br></b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12093648
title: KPOP DATA.xlsx

description: This excel sheet describes the data obtained through a survey conducted for a study on Social media and K-Pop.
DOI: 10.6084/m9.figshare.12093687.v1
title: Pre-trained model weight

description: This dataset contains pre-trained models for Gaussian Blur model, Distance Map model, and MRCNN model.
DOI: 10.6084/m9.figshare.12093693.v2
title: Table S2

description: Raw Data for Figure 3. <b>Monte Carlo simulations of two species competition. </b><b><br></b>Colonization of free habitat started from single individuals of each species.<b> </b>The number of Monte Carlo simulations equals to 200. Parameter P<sub>1</sub> reflects competitivness of the Species 1 and parameter P<sub>2</sub> reflects competitivness of the Species 2.(<b>A, B</b>) Competitive exclusion of the recessive Species 2 was observed in all cases. Species differences in competitivness equal to 100% (A) and 32% (B). (<b>C-D</b>) Stable coexistence of competing species was observed in all cases. Species differences in competitivness equal to 31% (C) and 0% (D).<b><br></b><b><br></b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12093687.v3
title: Model weights for the MRCNN model pre-trained with COCO

description: This dataset contains Model weights for the MRCNN model pre-trained with COCO.<br>
DOI: 10.6084/m9.figshare.12093693.v1
title: Table S1

description: Raw Data for Figure 3. <b>Monte Carlo simulations of two species competition. </b><b><br></b>Colonization of free habitat started from single individuals of each species.<b> </b>The number of Monte Carlo simulations equals to 200. Parameter P<sub>1</sub> reflects competitivness of the Species 1 and parameter P<sub>2</sub> reflects competitivness of the Species 2. Raw data are presented in Table S1. (<b>A, B</b>) Competitive exclusion of the recessive Species 2 was observed in all cases. Species differences in competitivness equal to 100% (A) and 32% (B). (<b>C-D</b>) Stable coexistence of competing species was observed in all cases. Species differences in competitivness equal to 31% (C) and 0% (D).<b><br></b><b><br></b><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.12093687.v2
title: Model weights for the MRCNN model pre-trained with COCO

description: This dataset contains Model weights for the MRCNN model pre-trained with COCO.<br>
DOI: 10.6084/m9.figshare.12093624
title: FilesS2-4

description: This dataset contain FileS2-5
DOI: 10.6084/m9.figshare.12093471
title: clustering and annotation metadata

description: There are 3 files in seurat_results.zip: one containing the principal component values used for dimensionality reduction and clustering of all MSN, one containing the computed tSNE values, and one containing the louvain clusters. The metadata_final.csv file contains the annotated major cell types and subtypes.