cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10455794
title: Dataset: The dynamic centres of infrared-dark clouds and the formation of cores

description: The tar archive for each of the seven IRDCs covered by NOEMA observations contains twelve files which are:

<IRDC>-USB-lores-filt-cont.fits.gz – Upper side band (2.8 mm) continuum image<IRDC>-LSB-lores-filt-cont.fits.gz – Lower side band (3.2 mm) continuum image<IRDC>-SPW03-HCOp-uvb-merged.fits.gz – HCO+ (1-0) data cube<IRDC>-SPW05-HNC-uvb-merged.fits.gz – HNC (1-0) data cube<IRDC>-SPW07-N2Hp-uvb-merged.fits.gz – N2H+ (1-0) data cube<IRDC>-SPW17-C18O-uvb-merged.fits.gz – C18O (1-0) data cube

in addition to an accompanying version suffixed with -prim.fits.gz which is the primary beam-corrected version, trimmed to the area where the primary beam response is > 0.5.
DOI: 10.6084/m9.figshare.24937065
title: Supplementary material: Robotic-assisted total hip arthroplasty: an economic analysis

description: <b>This is a peer-reviewed supplementary tabl</b><b>e for the article '</b><b>Robotic-assisted total hip arthroplasty: an economic analysis</b><b>' published in the</b><b><i> Journal of Comparative Effectiveness Research</i></b><b>.</b><b>Supplementary Table 1: </b>Index total knee arthroplasty coding<b>Summary: </b><b>Aim:</b> To evaluate 90-day episode-of-care (EOC) resource consumption in robotic-assisted total hip arthroplasty (RATHA) versus manual total hip arthroplasty (mTHA). <b>Methods:</b> THA procedures were identified in Medicare 100% data. After propensity score matching 1:5, 938 RATHA and 4,670 mTHA cases were included. 90-day EOC cost, index costs, length of stay and post-index rehabilitation utilization were assessed. <b>Results:</b> RATHA patients were significantly less likely to have post-index inpatient rehabilitation or skilled nursing facility admissions and used fewer home health agency visits, compared with mTHA patients. Total 90-day EOC costs for RATHA patients were found to be US$785 less than those of mTHA patients (p = 0.0095). <b>Conclusion:</b> RATHA was associated with an overall lower 90-day EOC cost when compared with mTHA. The savings associated with RATHA were driven by reduced utilization and cost of post-index rehabilitation services.
DOI: 10.6084/m9.figshare.24937065.v1
title: Supplementary material: Robotic-assisted total hip arthroplasty: an economic analysis

description: <b>This is a peer-reviewed supplementary tabl</b><b>e for the article '</b><b>Robotic-assisted total hip arthroplasty: an economic analysis</b><b>' published in the</b><b><i> Journal of Comparative Effectiveness Research</i></b><b>.</b><b>Supplementary Table 1: </b>Index total knee arthroplasty coding<b>Summary: </b><b>Aim:</b> To evaluate 90-day episode-of-care (EOC) resource consumption in robotic-assisted total hip arthroplasty (RATHA) versus manual total hip arthroplasty (mTHA). <b>Methods:</b> THA procedures were identified in Medicare 100% data. After propensity score matching 1:5, 938 RATHA and 4,670 mTHA cases were included. 90-day EOC cost, index costs, length of stay and post-index rehabilitation utilization were assessed. <b>Results:</b> RATHA patients were significantly less likely to have post-index inpatient rehabilitation or skilled nursing facility admissions and used fewer home health agency visits, compared with mTHA patients. Total 90-day EOC costs for RATHA patients were found to be US$785 less than those of mTHA patients (p = 0.0095). <b>Conclusion:</b> RATHA was associated with an overall lower 90-day EOC cost when compared with mTHA. The savings associated with RATHA were driven by reduced utilization and cost of post-index rehabilitation services.
DOI: 10.25810/8pez-h060.47
title: Asian Newspaper Coverage of Climate Change or Global Warming, 2004-2023 - November 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.10455823
title: Data and Code for Lowman et al. 2024, Macroscale controls determine the recovery of river ecosystem productivity following flood disturbances

description: Data and code for analyses in Lowman et al. 2024, Macroscale controls determine the recovery of river ecosystem productivity following flood disturbances.

See publication and ReadMe file for analysis description and further details.
DOI: 10.5281/zenodo.10455918
title: Functional analysis of single enzymes_Figure 5
DOI: 10.5281/zenodo.10455919
title: Functional analysis of single enzymes_Figure 5
DOI: 10.6084/m9.figshare.24937083
title: Supplementary materials: Are treatment effects consistent with hypothesized mechanisms of action proposed for postoperative delirium interventions? Reanalysis of systematic reviews

description: <b>This is peer</b><b>-reviewed supplementary material for the article '</b><b>Are treatment effects consistent with hypothesised mechanisms of action proposed for postoperative delirium interventions? Reanalysis of systematic reviews</b><b>' published in the</b><b><i> J</i></b><b><i>ournal of Comparative Ef</i></b><b><i>fectiveness Research</i></b><b>.</b><b>Summary: </b><b>Aim:</b> Postoperative delirium (POD) is associated with increased morbidity and is poorly understood. The aim of this review was to identify putative mechanisms through re-analysis of randomized trials on treatment or prevention of POD. <b>Materials & methods:</b> A systematic review was performed to identify systematic reviews of treatments for POD. Constituent randomized controlled trials were identified, and interventions were grouped according to hypothesized mechanisms of action. Effects were meta-analyzed by hypothesized mechanism and timing of intervention. <b>Results:</b> A total of 116 randomized controlled trials described 47 individual interventions for POD, with nine mechanisms identified. The largest effects were observed for postoperative inflammation reduction, and preoperative reinforcement of sleep–wake cycle. <b>Conclusion:</b> This approach identifies treatments focused on mechanisms of action that may be front runners for future trials and interventions.
DOI: 10.6084/m9.figshare.24937083.v1
title: Supplementary materials: Are treatment effects consistent with hypothesized mechanisms of action proposed for postoperative delirium interventions? Reanalysis of systematic reviews

description: <b>This is peer</b><b>-reviewed supplementary material for the article '</b><b>Are treatment effects consistent with hypothesised mechanisms of action proposed for postoperative delirium interventions? Reanalysis of systematic reviews</b><b>' published in the</b><b><i> J</i></b><b><i>ournal of Comparative Ef</i></b><b><i>fectiveness Research</i></b><b>.</b><b>Summary: </b><b>Aim:</b> Postoperative delirium (POD) is associated with increased morbidity and is poorly understood. The aim of this review was to identify putative mechanisms through re-analysis of randomized trials on treatment or prevention of POD. <b>Materials & methods:</b> A systematic review was performed to identify systematic reviews of treatments for POD. Constituent randomized controlled trials were identified, and interventions were grouped according to hypothesized mechanisms of action. Effects were meta-analyzed by hypothesized mechanism and timing of intervention. <b>Results:</b> A total of 116 randomized controlled trials described 47 individual interventions for POD, with nine mechanisms identified. The largest effects were observed for postoperative inflammation reduction, and preoperative reinforcement of sleep–wake cycle. <b>Conclusion:</b> This approach identifies treatments focused on mechanisms of action that may be front runners for future trials and interventions.
DOI: 10.18453/rosdok_id00004504
title: Data set for Three-dimensional magnetic resonance tomography with sub-10 nanometer resolution
DOI: 10.25919/pbgc-fq62
title: Parkes observations for project P1295 semester 2023OCTS_06

description: We propose observing time with the Parkes telescope to investigate four ``spider" millisecond pulsars (MSPs), PSR J1048+2339 (a redback spider), PSR J1908+2105 (an MSP that occupies a region of parameter space between black widows and redbacks), PSR J2052+1219 and PSR J2256-1024 (black widow spiders). Spider MSPs are commonly seen to exhibit frequency-dependent eclipsing. Observations with wide bandwidth telescopes like Parkes UWL (700-4000 MHz) will be extremely useful to study the eclipse mechanisms in these systems. Eclipse properties of spider MSPs are hitherto unexplored at the frequency regime available with the Parkes UWL receiver. We propose to investigate a sample of 4 MSPs mentioned above (for which polarization has not been studied) with the Parkes telescope using the UWL receiver in full polar mode, which will be addressed with this proposal. One of the aims is to model the eclipse phase spectra using wideband observations of these pulsars in an optically thick-to-thin transitioning regime (optical depth nearly 1), to explore the eclipse mechanism.
 Observing the possible changes in rotation measure (RM) at eclipse ingress and egress will allow us to probe the magnetic field in the eclipse boundaries. 
 We request to cover nearly one full orbit for each of these MSPs. Thus we propose 23 hours of observing time including time for setup and calibration in each epoch with the Parkes UWL receiver for the investigation of the eclipse mechanism as well as the polarization, profile evolution, and spectra of four spider MSPs.
DOI: 10.6084/m9.figshare.24937095
title: Supplementary material: Prognostic and predictive value of microsatellite instability status among patients with colorectal cancer

description: <b>This is a peer-reviewed supplementary table for the article '</b><b>Prognostic and predictive value of microsatellite instability status among patients with colorectal cancer</b><b>' published in the</b><b><i> Journal of Comparative Effectiveness Research</i></b><b>.</b><b>Supplementary Figure 1.</b> Overall survival in (A) stage II CRC and (B) stage III patients according to MSI status.<b>Supplementary Figure 2.</b> Stage II CRC with high-risk features.<b>Supplementary Figure 3.</b> Overall survival in (A) MSI-H and (B) MSI-S stage II CRC patients with highest-risk features according to chemotherapy.<b>Supplementary Figure 4.</b> Stage II CRC without high-risk features.<b>Supplementary Figure 5.</b> Overall survival in (A) MSI-H stage III CRC patients with low-risk features and (B) MSI-H stage III CRC patients with high-risk features according to chemotherapy.<b>Supplementary Figure A. </b>Patient selection.<b>Supplementary Figure B. </b>Histogram for raw data and matched data (stage II MSI-H and high-risk features).<b>Supplementary Figure C. </b>Histogram for raw data and matched data (stage II MSI-H and without high-risk features).<b>Supplementary Figure D. </b>Histogram for raw data and matched data (stage II MSI-S and without high-risk features).<b>Supplementary Table A</b>. Baseline characteristics of MSI-H stage II CRC patients with high-risk features according to chemotherapy after propensity score matching.<b>Supplementary Table B.</b> Baseline characteristics of MSI-H stage II CRC patients without high-risk features according to chemotherapy after propensity score matching.<b>Supplementary Table C. </b>Baseline characteristics of MSI-L stage II CRC patients without high-risk features according to chemotherapy after propensity score matching.<b>Supplementary Table D.</b> Multivariate analysis for MSI known status stage II & III CRC patients.<b>Summary: </b><b>Objectives:</b> Compare overall survival (OS) between microsatellite instability (MSI) high and MSI-stable and analyze the effect of chemotherapy on OS. <b>Methods:</b> National cancer database was queried for patients diagnosed with colorectal adenocarcinoma between 2010 and 2016. We evaluated the OS and the chemotherapy effect using Kaplan–Meier estimates and multivariate Cox regression analyses. <b>Results:</b> Total of 30,436 stage II patients and 30,302 stage III patients were included. In stage II with high-risk features and MSI-high, patients who received chemotherapy had better OS compared to patients who didn't receive chemotherapy. The same was found in stage II with no high-risk features and MSI-high group. <b>Conclusion:</b> Stage II colorectal cancer patients with high-risk features and MSI-high who received chemotherapy have better OS compared to patients who didn't receive chemotherapy.
DOI: 10.6084/m9.figshare.24937095.v1
title: Supplementary material: Prognostic and predictive value of microsatellite instability status among patients with colorectal cancer

description: <b>This is a peer-reviewed supplementary table for the article '</b><b>Prognostic and predictive value of microsatellite instability status among patients with colorectal cancer</b><b>' published in the</b><b><i> Journal of Comparative Effectiveness Research</i></b><b>.</b><b>Supplementary Figure 1.</b> Overall survival in (A) stage II CRC and (B) stage III patients according to MSI status.<b>Supplementary Figure 2.</b> Stage II CRC with high-risk features.<b>Supplementary Figure 3.</b> Overall survival in (A) MSI-H and (B) MSI-S stage II CRC patients with highest-risk features according to chemotherapy.<b>Supplementary Figure 4.</b> Stage II CRC without high-risk features.<b>Supplementary Figure 5.</b> Overall survival in (A) MSI-H stage III CRC patients with low-risk features and (B) MSI-H stage III CRC patients with high-risk features according to chemotherapy.<b>Supplementary Figure A. </b>Patient selection.<b>Supplementary Figure B. </b>Histogram for raw data and matched data (stage II MSI-H and high-risk features).<b>Supplementary Figure C. </b>Histogram for raw data and matched data (stage II MSI-H and without high-risk features).<b>Supplementary Figure D. </b>Histogram for raw data and matched data (stage II MSI-S and without high-risk features).<b>Supplementary Table A</b>. Baseline characteristics of MSI-H stage II CRC patients with high-risk features according to chemotherapy after propensity score matching.<b>Supplementary Table B.</b> Baseline characteristics of MSI-H stage II CRC patients without high-risk features according to chemotherapy after propensity score matching.<b>Supplementary Table C. </b>Baseline characteristics of MSI-L stage II CRC patients without high-risk features according to chemotherapy after propensity score matching.<b>Supplementary Table D.</b> Multivariate analysis for MSI known status stage II & III CRC patients.<b>Summary: </b><b>Objectives:</b> Compare overall survival (OS) between microsatellite instability (MSI) high and MSI-stable and analyze the effect of chemotherapy on OS. <b>Methods:</b> National cancer database was queried for patients diagnosed with colorectal adenocarcinoma between 2010 and 2016. We evaluated the OS and the chemotherapy effect using Kaplan–Meier estimates and multivariate Cox regression analyses. <b>Results:</b> Total of 30,436 stage II patients and 30,302 stage III patients were included. In stage II with high-risk features and MSI-high, patients who received chemotherapy had better OS compared to patients who didn't receive chemotherapy. The same was found in stage II with no high-risk features and MSI-high group. <b>Conclusion:</b> Stage II colorectal cancer patients with high-risk features and MSI-high who received chemotherapy have better OS compared to patients who didn't receive chemotherapy.
DOI: 10.5281/zenodo.10066309
title: gnomAD SQLite database WES v4.0

description: This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of <100G  and allows scientists to look for various variant annotations present in gnomAD (i.e. Allele Count, Depth, Minor Allele Frequency, etc.). (A query containing 300.000 variants takes ~40s.)
Find more information on here.
gnomAD SQLite database WES v4.0
DOI: 10.5281/zenodo.10066310
title: gnomAD SQLite database WES v4.0

description: This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of <100G  and allows scientists to look for various variant annotations present in gnomAD (i.e. Allele Count, Depth, Minor Allele Frequency, etc.). (A query containing 300.000 variants takes ~40s.)
Find more information on here.
gnomAD SQLite database WES v4.0
DOI: 10.5281/zenodo.10455901
title: gnomAD SQLite database WES v4.0

description: This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of <100G  and allows scientists to look for various variant annotations present in gnomAD (i.e. Allele Count, Depth, Minor Allele Frequency, etc.). (A query containing 300.000 variants takes ~40s.)
Find more information on here.
gnomAD SQLite database WES v4.0
DOI: 10.6084/m9.figshare.24649641.v3
title: Data from Campbell et al 2024 Herbivore effects increase with latitude across the extent of a foundational seagrass

description: Dataset contains leaf productivity, shoot density, leaf width, temperature and light data from the Thalassia Experimental Network.
DOI: 10.25810/558f-c477.68
title: Australian Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - November 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.24937137
title: Supplementary materials: Antibacterial data synthesis challenges: a systematic review of treatments for complicated Gram-negative urinary tract infections

description: <b>This is a peer-reviewed supplementary table for the article 'Antibacterial data synthesis challenges: a systematic review of treatments for complicated Gram-negative urinary tract infections' published in the </b><b><i>Journal of Comparative Effectiveness Research</i></b><b>.</b><b>Table S1. </b>MEDLINE and EMBASE search strings.<b>Table S2. </b>COCHRANE LIBRARY (CENTRAL and CDSR) search strings.<b>Table S3. </b>PICOTS eligibility criteria for the systematic literature review.<b>Table S4.</b> Risk of bias assessment using the Cochrane Collaboration Tool.<b>Table S5.</b> Patient baseline characteristics.<b>Figure S1. </b>PRISMA flow diagram.<b>Summary: </b><b>Aim:</b> To determine the suitability of network meta-analysis (NMA) using antibacterial treatment evidence in complicated urinary tract infection. <b>Materials & methods:</b> We conducted a systematic literature review to identify published clinical trial data for complicated urinary tract infection treatments. We performed a feasibility assessment to determine whether the available evidence would support the creation of a robust NMA, considering key assumptions of homogeneity, similarity and consistency. <b>Results:</b> Twenty-five trials met eligibility criteria. Risk of bias was low, and individual studies met their primary end point(s). Assumptions central to the conduct of a robust NMA were not met. Heterogeneity was ubiquitous, including baseline pathogen, treatment and patient characteristics. <b>Conclusion:</b> Limited and heterogeneous data identified make the use of NMA to compare novel antibacterial agents impractical and likely unreliable.
DOI: 10.6084/m9.figshare.24937137.v1
title: Supplementary materials: Antibacterial data synthesis challenges: a systematic review of treatments for complicated Gram-negative urinary tract infections

description: <b>This is a peer-reviewed supplementary table for the article 'Antibacterial data synthesis challenges: a systematic review of treatments for complicated Gram-negative urinary tract infections' published in the </b><b><i>Journal of Comparative Effectiveness Research</i></b><b>.</b><b>Table S1. </b>MEDLINE and EMBASE search strings.<b>Table S2. </b>COCHRANE LIBRARY (CENTRAL and CDSR) search strings.<b>Table S3. </b>PICOTS eligibility criteria for the systematic literature review.<b>Table S4.</b> Risk of bias assessment using the Cochrane Collaboration Tool.<b>Table S5.</b> Patient baseline characteristics.<b>Figure S1. </b>PRISMA flow diagram.<b>Summary: </b><b>Aim:</b> To determine the suitability of network meta-analysis (NMA) using antibacterial treatment evidence in complicated urinary tract infection. <b>Materials & methods:</b> We conducted a systematic literature review to identify published clinical trial data for complicated urinary tract infection treatments. We performed a feasibility assessment to determine whether the available evidence would support the creation of a robust NMA, considering key assumptions of homogeneity, similarity and consistency. <b>Results:</b> Twenty-five trials met eligibility criteria. Risk of bias was low, and individual studies met their primary end point(s). Assumptions central to the conduct of a robust NMA were not met. Heterogeneity was ubiquitous, including baseline pathogen, treatment and patient characteristics. <b>Conclusion:</b> Limited and heterogeneous data identified make the use of NMA to compare novel antibacterial agents impractical and likely unreliable.
DOI: 10.5281/zenodo.7992761
title: PatagoniaMet: A multi-source hydrometeorological dataset for Western Patagonia

description: <strong>PatagoniaMet v1.0 </strong>(PMET from here on) is new dataset for Western Patagonia which comprises two datasets: i) PMET-obs, a compilation of quality-controlled ground-based hydrometeorological data, and ii) PMET-sim, a daily gridded product of precipitation, and maximum and minimum temperature. PMET-obs was developed using a 4-step quality control process applied to 523 hydro-meteorological time series (precipitation, air temperature, potential evaporation, streamflow and lake level stations) obtained from eight institutions in Chile and Argentina. Based on this dataset and currently available uncorrected gridded products (ERA5), PMET-sim was developed using statistical bias correction procedures (i.e., quantile mapping), spatial regression models (random forest) and hydrological methods (Budyko framework). The details of each dataset are the following: - <strong>PMET-obs</strong> is a compilation of five hydrometeorological variables obtained from eigth institutions in Chile and Argentina. The daily quality-controlled data of each variable is stored in separate .csv files with the following naming convention: variable_PMETobs_1950_2020_v10d.csv. Each column represents a different gauge with its "gauge_id". Each variable has a additional .csv file with the metadata of each station (variable_PMETobs_v10_metadata.csv). For all variables, the metadata is at least the name (gauge_name), the institution, the station location (gauge_lat and gauge_lon), the altitude (gauge_alt) and the total number of daily records (length). Following current guidelines for hydrological datasets, the upstream area corresponding to each stream gauge was delimited, and several climatic and geographic attributes were derived. The details of the attributes can be found in the README file. - <strong>PMET-sim</strong> is a daily gridded product with a spatial resolution of 0.05° covering the period 1980-2020. The data for each variable (precipitation and maximum and minimum temperature) are stored in separate netcdf files with the following naming convention: variable_PMETsim_1980_2020_v10d.nc. <strong>Citation: </strong> Aguayo, R., León-Muñoz, J., Aguayo, M., Baez-Villanueva, O., Fernandez, A. Zambrano-Bigiarini, M., and Jacques-Coper, M. (2023) PatagoniaMet v1.0: A A multi-source hydrometeorological dataset for Western Patagoniaa (40-56ºS). Submitted to Scientific Data. <strong>Code repository: </strong>https://github.com/rodaguayo/PatagoniaMet