cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/2s8wyzfhc9.1
title: Data for: An analytical-numerical approach to vibration analysis of periodic Timoshenko beams

description: The subject of this article is analysis of transverse vibrations of beams which geometric and material properties vary periodically along the longitudinal axis. The aim is to present averaged models that take into account the shear deformation and geometric non-linearity, and to analysand transverse vibrations of such beams in moderately large deflection range. As the theoretical foundations, we use Timoshenko beam theory with von Kármán-type non-linearity. This results in obtaining new differential equations with constant coefficients, some of which explicitly depend on the beam inhomogeneity period size. Then, a reasonably simplified model is proposed to describe the vibrations of the considered beams in the low frequency range. The differential equations are transformed into a system of algebraic equations according to the Galerkin method. The response of the beam to transverse harmonic load is investigated by means of a pseudo arc-length continuation scheme. Non-linear coupling between vibration modes and the possibility of superharmonic resonance occurrence are taken into account. As an example of application, few special cases of beam geometry and boundary conditions are examined and compared.
DOI: 10.17632/nyvfm57dfw.4
title: Data for: Design & Operations improvements in LNG regasification terminal through corrected storage tank model

description: The data include the process parameters and simulation model data used for LNG terminal design and then optimization.
DOI: 10.17632/zp4kd4zwyr.1
title: Data for: High-temperature infrared absorption cross-sections to facilitate the study of hydrocarbon pyrolysis

description: A collection of high-temperature absorption cross-sections for hydrocarbon in the mid-infrared.
DOI: 10.5061/dryad.1d21m78/1
title: BTO-Blue-Tit-Great-Tit_Coal-Tit-Records

description: Data were originally supplied by the British Trust for Ornithology. Ring_no = the individual-specific number on the metal ring associated with the bird.
DOI: 10.5061/dryad.24q6q70/1
title: Repeatability data

description: Data used to estimate repeatability of habitat selection in a boreal population of woodland caribou in Charlevoix, Québec, Canada, 2004‒2011, during the snow-covered and snow-free seasons.
DOI: 10.5061/dryad.2sr6316/8
title: Summary of Bacteria Treatments

description: Reference table of the gut bacteria treatments used in this study. The 32 treatments listed include all possible combinations of the 5 species of gut bacteria examined in this study.
DOI: 10.5061/dryad.33m546g/3
title: Relative gene expression data

description: Relative gene expression data for all fish in control and treatment tanks
DOI: 10.5061/dryad.33m546g/4
title: Survival from eyed-egg to fry

description: Survival from eyed-egg to fry measured by alive and dead offspring. Survival values are provided for each family (n=56). Data were converted to binary format for analyses.
DOI: 10.5061/dryad.33m546g/5
title: Early fry survival

description: Data for early fry survival (from ponding to February). Survival data are provided for each family. Data were transformed to binary format for analyses.
DOI: 10.5061/dryad.33m546g/6
title: Late fry survival

description: Data for late fry survival (February to June). Data are provided for each tank and were transformed to binary format for analyses.
DOI: 10.5061/dryad.33m546g/7
title: Weight and length data for fry

description: Weight (wt) and fork length (FL) data for fry in December, February, April, and July.  A total of 15 fish were randomly sampled at each date (not same fish each time). Missing data points within a family indicate that no additional fish were alive in the family at that time point (or after that point).
DOI: 10.5061/dryad.33m546g/8
title: IHNV survival challenge

description: Survival data (dead and alive fish) for IHNV and mock challenge. Survival was measured over 35 days after exposure to the live IHNV virus or exposure to mock conditions.
DOI: 10.5061/dryad.3kh7820/1
title: MS data (mgf files) of the egg perivitelline fluid of Marisa cornuarietis

description: RAW MS files were converted to mgf files as input for Mascot v2.3.2 (Matrix Sciences, London, UK)
DOI: 10.5061/dryad.3kh7820/4
title: Genome data of three ampullariids

description: Genome data used for PVF protein identification and evolutionary analysis
DOI: 10.5061/dryad.4053d31/2
title: Consensus TE sequences analyzed by RepeatExplorer in spinach genome
DOI: 10.5061/dryad.6hk485q/1
title: Raw and Processed Data from Rodman et al. (2019, Ecosphere)

description: Data in this archive include spatially-referenced aerial imagery from 1938, as well as processed data used in final analysis of land cover change in the Colorado Front Range. See "README" file for a further description of the included data.
DOI: 10.5061/dryad.7t4s040/1
title: Location and infection information from individuals in the study
DOI: 10.5061/dryad.8458257/1
title: Chick data

description: Chick data (both weights and survival).
DOI: 10.5061/dryad.8458257/2
title: Adult data

description: Adult data (both fecundity and survival).
DOI: 10.5061/dryad.8458257/3
title: Pedigree data

description: Pedigree data
DOI: 10.5061/dryad.8458257/4
title: R code

description: Analysis scripts
DOI: 10.5061/dryad.8824sd0/1
title: Palm and soil measurements, Beni savanna

description: This dataset contains plot level data collected in the Barba Azul Nature Reserve, Beni Savanna, Bolivia between July and October 2016 as part of the MSc thesis project of Iris Hordijk, Fabian Meijer and Esther Nissen. Data on palm abundance and condition, juvenile abundance and condition, fruit density, soil fertility, general plot characteristics and geographic information are measured and recorded. The dataset is owned by the data collectors, Wageningen University and the Bolivian NGO Armonía.
DOI: 10.5061/dryad.8q9v6mv/1
title: Plant-Lepidoptera larval interaction matrix constructed by molecular method

description: In this interaction matrix, 239 Lepidoptera species associated with 102 plant species/species complexes.
DOI: 10.5061/dryad.8q9v6mv/2
title: Taxonomic labels of 406 Lepidoptera species

description: This file describes Genbank accession ID and taxonomic label of each Lepidoptera species.
DOI: 10.5061/dryad.8q9v6mv/3
title: Link similarity and dissimilarity identified by molecular and observation method

description: Link similarities and dissimilarities for 795 Lepidoptera larvae identified by the molecular method and the traditional observation method, respectively.
DOI: 10.5061/dryad.8s75sg6/1
title: gs15_139b_TOLs

description: TOL levels for the entire recording period for grey seal gs15_139b. Data is structured per day in 30 sec averages
DOI: 10.5061/dryad.97s68c2/1
title: Tables for fpkm values

description: Tables for fpkm values for RNA-seq data calculated using Cufflinks:genes.fpkm_tracking, isoforms.fpkm_tracking, and tss_groups.fpkm_tracking
DOI: 10.5061/dryad.97s68c2/2
title: Peak call files for ChIP-seq data

description: Peak call files for CHIP-seq data produced by MACS2:EM0409D0_K27ac_macs2_peaks.narrowPeak
EM0409D0_K27me3_macs2_peaks.broadPeak
EM0409D0_K9me3_macs2_peaks.broadPeak
EM0409D4_K27ac_macs2_peaks.narrowPeak
EM0409D4_K27me3_macs2_peaks.broadPeak
EM0409D4_K9me3_macs2_peaks.broadPeak
EM0409D8_K27ac_macs2_peaks.narrowPeak
EM0409D8_K27me3_macs2_peaks.broadPeak
EM0409D8_K9me3_macs2_peaks.broadPeak
EM0519D0_K27ac_macs2_peaks.narrowPeak
EM0519D0_K27me3_macs2_peaks.broadPeak
EM0519D0_K9me3_macs2_peaks.broadPeak
EM0519D4_K27ac_macs2_peaks.narrowPeak
EM0519D4_K27me3_macs2_peaks.broadPeak
EM0519D4_K9me3_macs2_peaks.broadPeak
EM0519D8_K27ac_macs2_peaks.narrowPeak
EM0519D8_K27me3_macs2_peaks.broadPeak
EM0519D8_K9me3_macs2_peaks.broadPeak
DOI: 10.5061/dryad.97s68c2/3
title: bigwig_files

description: "bigwig_files.zip" (md5 checksum: a7cee3f55c6c3d53dd562475aa7fc1f3).
 
The "bigwig_files.zip" file contains the following 25 bigwig files (19 files for ChIP-seq data and 6 files for RNA-sea data).

EM0409_D0_H3K27ac.hg19.bw
EM0409_D0_H3K27me3.hg19.bw
EM0409_D0_H3K9me3.hg19.bw
EM0409_D4_H3K27ac.hg19.bw
EM0409_D4_H3K27me3.hg19.bw
EM0409_D4_H3K9me3.hg19.bw
EM0409_D4_input.hg19.bw
EM0409_D8_H3K27ac.hg19.bw
EM0409_D8_H3K27me3.hg19.bw
EM0409_D8_H3K9me3.hg19.bw
EM0519_D0_H3K27ac.hg19.bw
EM0519_D0_H3K27me3.hg19.bw
EM0519_D0_H3K9me3.hg19.bw
EM0519_D4_H3K27ac.hg19.bw
EM0519_D4_H3K27me3.hg19.bw
EM0519_D4_H3K9me3.hg19.bw
EM0519_D4_input.hg19.bw
EM0519_D8_H3K27me3.hg19.bw
EM0519_D8_H3K9me3.hg19.bw
RNAseq_EM0409_D0.hg19.bw
RNAseq_EM0409_D4.hg19.bw
RNAseq_EM0409_D8.hg19.bw
RNAseq_EM0519_D0.hg19.bw
RNAseq_EM0519_D4.hg19.bw
RNAseq_EM0519_D8.hg19.bw
DOI: 10.5061/dryad.bs79gk5/1
title: Data for figures 3, 4, 5

description: Data for figures 3,4, 5
DOI: 10.5061/dryad.bt211nm/1
title: OTU table

description: OTU table built from amplicons of DNA extracted from faeces of Galemys pyrenaicus to identify its diet. Table includes OTUs, read numbers, sequences and species assignations by Blast with query cover values, pairwise identities and e-values.
DOI: 10.5061/dryad.db4dt3t/12
title: Suppl. data: alignments

description: NEXUS concatenated data matrix including DNA sequence, indel and morphological partitions, and relaxed PHYLIP alignments of each individual partition.
DOI: 10.5061/dryad.g38g40b/1
title: Exploring and visualising spaces of tree reconciliations: Supplementary Material I (Proofs)
DOI: 10.5061/dryad.g38g40b/3
title: supplementary-material-II
DOI: 10.5061/dryad.gh162v1/1
title: Data and scripts from Miller et al.: Explaining the ocean’s dominant species richness gradient and global patterns of fish diversity

description: Data and R scripts from: Explaining the ocean’s dominant species richness gradient and global patterns of fish diversity
Authors: Elizabeth Christina Miller, Kenji T. Hayashi, Dongyuan Song, and John J. Wiens
Corresponding author: EC Miller (ecmiller 'at' email.arizona.edu or lizmiller2633@gmail.com)
Please contact with questions or requests for additional material.

R scripts are ordered following the Material and Methods section. Input files are included.
DOI: 10.5061/dryad.h1nj848/1
title: Functional traits of Hevea brasiliensis clones

description: wood and leaf traits and tree size for Hevea brasiliensis clones from Brazil planted in a provenance trial in Thailand
DOI: 10.5061/dryad.k0h70b0/1
title: Authorship of submitted papers_anonymized

description: The submitted papers dataset used for analyses in Fox et al. The dataset has been anonymized by removing author country identifiers (and associated country data), inclusion of which could allow some authors to be identified; the dataset only includes higher level geographic locations.
DOI: 10.5061/dryad.kb8203f/3
title: SCRuM Face Validitation results

description: Face validation of the SCRuM test battery using key informants
DOI: 10.5061/dryad.kb8203f/4
title: SCRuM Feasibility Assessment results

description: Results on practical feasibility assessment of the SCRuM test battery using local rugby coaches
DOI: 10.5061/dryad.kh0f141/1
title: wing shape data
DOI: 10.5061/dryad.kh0f141/2
title: microsatellite genotypes data
DOI: 10.5061/dryad.kv27n5g/1
title: Flint Hills fitness data

description: Fitness data collected in 2015 for Chamaecrista fasciculata at Flint Hills. Please see README file for details.
DOI: 10.5061/dryad.kv27n5g/2
title: Grey Cloud fitness data

description: Fitness data collected in 2015 for Chamaecrista fasciculata at Grey Cloud. Please see README file for details.
DOI: 10.5061/dryad.kv27n5g/3
title: Flint Hills herbivory data

description: Herbivory data collected in 2015 for Chamaecrista fasciculata at Flint Hills. Column names are defined in README file for "FH_2015_census_data_revised.csv," except for "herbivory" column, which denotes the presence (1) or absence (0) of herbivory during any census.
DOI: 10.5061/dryad.md2n292/1
title: all_data_zipped

description: This zipped folder contains subfolders raw_data and processed_data. Inside raw_data, there are separate folders for each monkey. Check the README file for full details.
DOI: 10.5061/dryad.n0p44hn/4
title: BPP loci data set

description: Reduced data set of 500 random loci used in Bayesian Phylogeography and Phylogenetics analyses.
DOI: 10.5061/dryad.n0p44hn/5
title: Interleaved nexus file for SVDquartets (ingroup data set)

description: In-group data set used for SVDquartets analysis
DOI: 10.5061/dryad.n0p44hn/6
title: VCF file containing SNPs for DAPC (outgroup data set)

description: Single nucleotide polymorphism data for all individuals. Used for DAPC analyses and calculating f-statistics. (See "Population assignments" file for corresponding population data for individual IDs.)
DOI: 10.5061/dryad.n0p44hn/7
title: TreeMix/F4 data set

description: Data set used for TreeMix and F4 analyses. The data is in plink stratified allele frequency format, which can be converted to work in TreeMix and F4 using TreeMix's inbuilt conversion script. For more details see the TreeMix Bitbucket site: https://bitbucket.org/nygcresearch/treemix/wiki/Home F4 is available to download here: https://github.com/mmatschiner/F4
DOI: 10.5061/dryad.n0p44hn/8
title: Link to raw data

description: This is a text file that contains a link to the demultiplexed raw sequencing data for all individuals used in this study. The fastq files are named using each individual's ID; more information about individuals can be found in the "Population assignment" file. Note that the gzipped directory is 31Gb.
DOI: 10.5061/dryad.p069231/3
title: SimBa_SAl_Supplementary_Information

description: Supplementary Information
DOI: 10.5061/dryad.q6q1726/1
title: Representative sequences for all OTUs

description: Unclustered representative sequences for all OTUs
DOI: 10.5061/dryad.q6q1726/2
title: FF7_ITS2map

description: Barcode and primer mapping file
DOI: 10.5061/dryad.q6q1726/3
title: FF8_ITS2map

description: Barcode and primer mapping file
DOI: 10.5061/dryad.q6q1726/4
title: Final OTU/Sample data matrix

description: OTU-table with taxonomic annotation for OTUs and information on sample treatments
DOI: 10.5061/dryad.q6q1726/5
title: Raw sequences (forward reads) first part

description: First part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.q6q1726/6
title: Raw sequences (forward reads) second part

description: Second part of the bzip-compressed fastq-file containing raw sequences (forward reads) from Illumina HiSeq of pooled fungal DNA. Split with HJSplit as recommended by Dryad (http://wiki.datadryad.org/Large_File_Transfer).
DOI: 10.5061/dryad.qt8744c/1
title: data_files
DOI: 10.5061/dryad.rm2n805/5
title: Site covs GFDLB1b

description: Covariates file for future predictions of species abundances based on the CNRM climate projections. All covariates as described in "Site covs.Roberts et al. 2019 EcoApps.csv" file except that temperature (TMN, TMX, dDMN, dTMX) data are sampled from future predictions according to the GFDLB1 scenario.
DOI: 10.5061/dryad.rm2n805/6
title: Site covs MIROC85b

description: Covariates file for future predictions of species abundances based on the CNRM climate projections. All covariates as described in "Site covs.Roberts et al. 2019 EcoApps.csv" file except that temperature (TMN, TMX, dDMN, dTMX) data are sample from future predictions according to the MIROC85 scenario.
DOI: 10.5061/dryad.t0680db/1
title: Code - Chance calculation
DOI: 10.5061/dryad.t0680db/2
title: Code - Choices over days calculation
DOI: 10.5061/dryad.t0680db/3
title: Code - Choices per day calculation
DOI: 10.5061/dryad.t0680db/4
title: Code - Decision Learner
DOI: 10.5061/dryad.t0680db/5
title: Code - Decision nonlearner
DOI: 10.5061/dryad.t0680db/6
title: Code - measurements
DOI: 10.5061/dryad.t0680db/7
title: Code - parameters
DOI: 10.5061/dryad.t0680db/8
title: Code - paternity
DOI: 10.5061/dryad.t0680db/9
title: Master Code
DOI: 10.5061/dryad.tp24j18.1
title: Data from: Response to short-term deprivation of the human adult visual cortex measured with 7T BOLD
DOI: 10.5061/dryad.tp24j18.2
title: Data from: Response to short-term deprivation of the human adult visual cortex measured with 7T BOLD
DOI: 10.5061/dryad.tp24j18.2/2.2
title: Data from: Response to short-term deprivation of the human adult visual cortex measured with 7T BOLD

description: Large .mat file (readable from matlab) holding all the fMRI and psychophysical data reported in the manuscript. see readme file for details on how variables are formatted and what information is stored in each of them.
DOI: 10.5061/dryad.vc7cf5m/1
title: enchytraeid assemblages
DOI: 10.5061/dryad.vj134s0/1
title: Growth chamber data

description: Raw growth chamber data for fourteen Lasthenia taxa analyzed in manuscript. Response variable: Inflor_biomass. Treatment levels, D (drought = 1), MD (minor drought = 2), B (benign = 3), MF (minor flood = 4), F (flood = 5). See paper and GitHub repository for details on how this file was filtered and parsed for downstream analyses.
DOI: 10.5061/dryad.vj134s0/2
title: Lasthenia depths

description: Field measures for average depth (cm) of taxon occurring within vernal pools.
DOI: 10.5061/dryad.vj134s0/3
title: Name key

description: Name key matching growth chamber taxa and tree tip labels
DOI: 10.5061/dryad.vj134s0/4
title: Posterior trees

description: Each line of the file contains a posterior phylogeny generated using BALi-Phy (Suchard and Redelings 2006)
DOI: 10.17632/bchrjbhc3x.1
title: Data for: Earthquake-Risk Salience and Housing Prices: Evidence from California

description: Includes: Datasets: - Peak Ground Acceleration, 1996, Source: US Geological Survey - Record of Earthquakes, 1997-2016, Source: National Oceanic and Atmospheric Administration - Zillow Home Value Index (ZHVI), Source: Zillow.com - Zillow Median Listing Price per sq ft (ZMLP), Source: Zillow.com - Zipcode Centroid Coordinations - Country-World Region Walk-through R Code to reproduce the results and graphs
DOI: 10.5061/dryad.18p3h04/1
title: Melo et al_2018_PNAS_QTL-GWAS dataset

description: This dataset includes SNP physical positions (pos in bp, v1.4 of the sorghum genome) and association P-values with Al tolerance (RNRG) and SbMATE expression (RQ) obtained from biparental mapping (QTL) and genome wide association mapping (GWAS) (Fig. 2). Data was generated with TASSEL. Quantitative trait mapping in recombinant inbred lines: QTL.csv. Genome wide association mapping: GWAS.csv. Al tolerance was measured as RNRG: relative net root growth (see supplementary methods) SbMATE expression: RQ - relative quantification using the ddCt method (see supplementary methods).
DOI: 10.5061/dryad.2122768.1
title: Data from: The mesic savannas of the Bateke Plateau: carbon stocks and floristic composition
DOI: 10.5061/dryad.2122768.2
title: Data from: The mesic savannas of the Bateke Plateau: carbon stocks and floristic composition
DOI: 10.5061/dryad.2qp305p/1
title: ValidationMetric

description: matlab function
DOI: 10.5061/dryad.425vg4m/1
title: scripts

description: Zip file of scripts used in PHYLUCE pipeline from assembly through RAxML trees. Scripts include those for the "empirical" data set and those for the "empirical + in silico" data set with the extension "_empIns added to each script name.
DOI: 10.5061/dryad.425vg4m/2
title: config_files

description: Zip file of configuration files used in the PHYLUCE pipeline. Files included for assembly, Illuminiprocessor, taxonomic sets, and incomplete matrix. Taxon-set2.conf and all_empIns-taxa-incomplete.conf are for the "empirical + in silico" data sets.
DOI: 10.5061/dryad.425vg4m/3
title: UCE_loci

description: Zip of .fasta and .incomplete files of UCE loci identified. Output from extract_fasta.sh and extract_fasta_empIns.sh scripts. Used as input for internal_trim.sh and internal_trim_empIns.sh scripts respectively.
DOI: 10.5061/dryad.425vg4m/4
title: RAxML_alignment_input_&_Trees_output

description: Zip of UCE loci and character set files used as input for RAxML for both the "empirical" and "empirical + in silico" (empIns) data sets for the 60% data matrix. The output reconciled tree from RAxML for each data set.
DOI: 10.5061/dryad.615p248/1
title: Data and scripts

description: This file includes the data and scripts necessary to generate all results in the manuscript.
DOI: 10.5061/dryad.6mn56r9/1
title: Number of grasshoppers observed during pre-flowering phase

description: These data present number of grasshoppers during pre-flowering phase. Analysis of these data is presented in Table 1.
DOI: 10.5061/dryad.6mn56r9/2
title: Number of caterpillars observed during pre-flowering phase

description: These data present number of caterpillars during pre-flowering phase. Analysis of these data is presented in Table 1.
DOI: 10.5061/dryad.6mn56r9/3
title: Number of grasshoppers observed during flowering phase

description: These data present number of grasshoppers during flowering phase. Analysis of these data is presented in Table 1.
DOI: 10.5061/dryad.6mn56r9/4
title: Number of seed predators observed during fruiting phase

description: These data present number of seed predators during fruiting phase. Analysis of these data is presented in Table 1.
DOI: 10.5061/dryad.6p3p701/1
title: data_packet

description: This is a zipped (.zip) folder that contains the alignments used for molecular phylogenetic analyses in this study. Specifically it includes: 1) the two-locus (ITS, nucLSU) alignment compiled by Serusiaux et al. (2010, Fungal Biology 114: 528-537) with the addition of a sequence newly generated for our study. 2) the partition file and the input phylip file used for maximum likelihood analyses in this study.
DOI: 10.5061/dryad.6pp21np/1
title: Simmonds_etal_JAE_thresholds

description: File provides the data used to examine thresholds in the richness-natural land cover relationship, among landscape with different attributes.
DOI: 10.5061/dryad.6pv18k3/1
title: SongScope Model parameters

description: Input parameters for SongScope model
DOI: 10.5061/dryad.6pv18k3/2
title: Code_for_map

description: R code for Figure 5
DOI: 10.5061/dryad.6pv18k3/3
title: final_model

description: R data file of final DOM model
DOI: 10.5061/dryad.6pv18k3/4
title: HihiDOM_Modelselectionandcreation

description: R code for DOM model selection
DOI: 10.5061/dryad.6pv18k3/5
title: R_code_Variables_original

description: Model variables
DOI: 10.5061/dryad.70t85k2/1
title: GERP scores and neutral model

description: - GERP; mutation load analysis.
	- chr10.4degen.tre; newick-format neutral model tree generated from fourfold-degenerate sites of plant genomes aligned to chromosome 10 of maize.
	- Zea_mays.allChr.rates.gz; gerpcol output (expected substitutions and RS scores) used for analysis across the maize genome.
DOI: 10.5061/dryad.70t85k2/2
title: Maize SNP calls

description: Binary plink-formatted files containing the complete set of SNP calls before processing for linkage.
DOI: 10.5061/dryad.70t85k2/3
title: mapDamage results

description: Complete mapDamage output files for nine newly sequenced ancient maize genomes.
DOI: 10.5061/dryad.70t85k2/4
title: Custom scripts

description: Contains custom scripts with functions described in the supplemental methods. Refer the commented header lines of each for details of usage.
DOI: 10.5061/dryad.84c66/1
title: Ontogeny of kin resemblance in macaques

description: See ReadMe.rtf
DOI: 10.5061/dryad.89b2c4s/1
title: Trajectory kinematics and behaviour from all tracks

description: Trajectory, environmental and behavioral data from Common Swift (Apus apus) flight tracks