cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.7582
title: Research data supporting "Laser-Induced Reduction and In-situ Optical Spectroscopy of Individual Plasmonic Copper Nanoparticles for Catalytic Reactions"

description: Author: Giuliana Di Martino email: gd392@cam.ac.uk Principal Investigator: Jeremy J. Baumberg email of PI: jjb12@cam.ac.uk Institute: NanoPhotonics Centre, Department of Physics, Cavendish Laboratory, University of Cambridge The data files contain optical spectra of the experimental and simulated data. Details on the acquisition method are included in the main manuscript. Igor Pro has been used to acquire and plot the data. PovRay and PowerPoint has been used to create Fig.1. File formats: - raw data files are supplied as .txt files - images are supplied as .png or .pdf files
DOI: 10.17863/cam.107943
title: Research data supporting: "Understanding the genetic complexity of puberty timing across the allele frequency spectrum"

description: This dataset is made up of GWAS meta-analysis for age at menarche (AAM), in up to 799,845 women. All studies provided GWAS data imputed to at least 1000 Genomes reference panel density, yielding a total of ~12.7 million genetic variants in the final meta-analysis. Variants were meta-analysed using a fixed-effects inverse-variance-weighted model in METAL and filtered to include minor allele frequency (MAF) &gt;= 0.1%. Summary statistics made available for download are from an analysis excluding 23andMe (ancestry combined up to n=723,014 and European-only up to n=556,124) and following all the filtering steps as outlined above. Datasets available for download: 1) Ancestry combined GWAS summary statistics Menarche2024_AncestryCombined_RELEASE_EXC23andMe.txt.gz 2) European-only GWAS summary statistics Menarche2024_EuropeanOnly_RELEASE_EXC23andMe.txt.gz Both tab-delimited files, with one row per SNP including the same columns as the above. For further information please check the supplied readme file or the associated publication.
DOI: 10.17863/cam.56685
title: Numerical model supporting "Tidal grounding-line migration modulated by subglacial hydrology"

description: This code implements the reduced model of grounding line migration derived and used in the Warburton 2020 - "Tidal grounding line migration modulated by subglacial hydrology". Given tidal height over time, bedslope, and hydraulic permittivity, it returns the height of the grounding line.
DOI: 10.17863/cam.63758
title: Research data supporting "Aerosol-Jet Printed Conformable Microfluidic Force Sensors"

description: The repository includes original SEM image and data collections for the figures in the paper titled "Aerosol-Jet Printed Conformable Microfluidic Force Sensors" (Figure 3, 4, 5 and figures in Supplemental Information). The data was collected from experimental results and simulation results. The collection of experimental data includes means of impedance analyzer, Arduino board, force gauge, etc. The simulation method is based on Comsol Multiphysics.
DOI: 10.6084/m9.figshare.c.3625193_d1
title: Additional file 2: of Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

description: Alignment and mapping results of the Illumina RNA-Seq reads in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3625193_d2
title: Additional file 1: of Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

description: Primer sequences used in the qRT-PCR experiment. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3625196_d1
title: MOESM7 of Age-associated hydroxymethylation in human bone-marrow mesenchymal stem cells

description: Additional file 7: Table S7. Gene ontology analyisis of hypo5hmC CpG sites during aging. RR: relative risk is a measure of effect size describing the change of proportions between our selected set of genes and a given term; Q value is the result from the adjustment of P values in order to control the false discovery rate (FDR) using the Benjamini-Hochberg method.
DOI: 10.17863/cam.1674
title: Research data supporting “The missing link: explaining ELF static linking, semantically”

description: Data submitted to the Artefact Evaluation Committee of the ACM SIGPLAN conference on Systems, Programming, Languages and Applications: Software for Humanity (SPLASH) 2016 conference, in support of the publication "The missing link: explaining ELF static linking, semantically". The data consists of Gzipped TAR archive containing our Lem source code, linker test cases, and accompanying Isabelle 2016 sources of the formal proof mentioned in the paper.
DOI: 10.6084/m9.figshare.c.3625193_d3
title: Additional file 3: of Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

description: Expression clusters, annotation, and functional categories and distribution of 20,944 genes expressed in the flesh tissues of both WT and MT across various developmental stages. (XLSX 355 kb)
DOI: 10.6084/m9.figshare.c.3625196_d2
title: MOESM6 of Age-associated hydroxymethylation in human bone-marrow mesenchymal stem cells

description: Additional file 6: Table S6. Gene ontology analyisis of hyper5hmC CpG sites during aging. RR: relative risk is a measure of effect size describing the change of proportions between our selected set of genes and a given term; Q value is the result from the adjustment of P values in order to control the false discovery rate (FDR) using the Benjamini-Hochberg method.
DOI: 10.6084/m9.figshare.c.3625199_d2
title: Additional file 4: Table S4. of Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)

description: Assembly Results. Complete listing of assemblies produced from the raw reads. (XLSX 18Â kb)
DOI: 10.17863/cam.96759
title: Research data supporting - Energy landscapes and heat capacity signatures for monomers and dimers of amyloid forming hexapeptides

description: The discrete path sampling database for various hexapeptide sequences obtained using GMIN, OPTIM and PATHSAMPLE programs interfaced with AMBER for energy landscape exploration. The detailed description of the steps to obtain a discrete path sampling database and analyse it can be found on the github page of the author (repository URLs are listed under Related Resources).
DOI: 10.6084/m9.figshare.c.3625193_d4
title: Additional file 5: of Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

description: GO analysis results of the genes expressed only in the flesh or peel tissue of WT or MT. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3625199_d3
title: Additional file 2: Table S2. of Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)

description: Final Probe Regions. Complete listing of all regions used in alignments to generate probes. (XLSX 1446Â kb)
DOI: 10.17863/cam.65236
title: Methane--water GAP-models, their datasets and parameters

description: Water and methane--water GAP-models to describe the 2B and 3B interactions including up to one methane molecule. Summing them with the TTM4Fmod water model (from the MBpol's OpenMM plugin), the model approximates the CCSD(T)-F12a/AVTZ quantum chemical level. For details, see the README files and the PhD thesis of the author.
DOI: 10.17863/cam.9209
title: Research Data: The role of optical projection in the analysis of membrane fluctuations

description: In the zipped folder "codes.zip" and sub-folders: flickering.m : matlab class that contains all the functions to set up and perform the analysis of a video of a flickering vesicle, to retrieve the spectrum of its fluctuations. example.m : a brief example script where the flickering.m class is used. export_spectrum.m : a scripts that loads the output of a flickering analysis (e.g. of example.m) and converts it to a json file format, ready for the fitting routine. DataAnalysis.nb : commented Mathematica notebook containing the fitting routine and an example of its usage. LTable.nb : support Mathematica file DataExample_X.json : example spectra readable by the Mathematica notebook. In the zipped folder "Sample_Data.zip": Examples of flickering confocal videos collected for the same vesicle at different pinhole size (and thus z-resolution, see paper). The videos are in tif format. The text file "Experimental" contains information on the pixel size, framerate, and pinhole size of each video.
DOI: 10.15468/dl.4n42bb
title: Occurrence Download

description: A dataset containing 36904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Norway, Denmark, United Kingdom of Great Britain and Northern Ireland, Germany, Netherlands, Sweden, Belgium)",
 "Geometry POLYGON((-2.53592 51.59571,13.32894 51.59571,13.32894 57.94716,-2.53592 57.94716,-2.53592 51.59571))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gadus morhua Linnaeus, 1758",
 "Year 2000-2024"
 ]
}

 The dataset includes 36904 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033235-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.66938
title: Theoretical model of HSV-1 pUS3 kinase domain

description: Theoretical structural model of the conserved catalytic domain of herpes simplex virus pUS3 serine/threonine kinase. Model was generated by TrRefineRosetta using the Robetta web server (https://robetta.bakerlab.org/) using the sequence of pUS3 from HSV-1 strain KOS (Uniprot ID H9E970) as a query sequence.
DOI: 10.17863/cam.49111
title: Data supporting research paper Shear behaviour of fabric formed T beams reinforced using W-FRP

description: Data originating from EP/M01696X/1, Knitting Bespoke Reinforcement for New Concrete Structures. Data is in the format of laboratory tests on reinforced concrete beams. The data was collected from load cell and displacement transducers present during each beam test undertaken in the University of Bath laboratory. The data is presented as a series of CSV files, which include the raw data as collected. They are named according to the convention in the paper.
DOI: 10.17863/cam.21378
title: Research data supporting Imaging Bulk and Edge Transport near the Dirac Point in Graphene Moiré Superlattices

description: Raw data for each figure in above manuscript. Origin project file.
DOI: 10.17863/cam.62937
title: Mechanical Turk Accessibility (CHI 2021) Dataset

description: Includes dataset of two surveys and an interview for a study to understand accessibility and human factors issues in online crowd work. Participants responded to the surveys through Amazon Mechanical Turk and provided information on demographics as well as how they engage in online work on the platform. The dataset contains data from the two surveys and an interview (can be viewed on the different tabs). Garbage data has been removed from the dataset (in survey 2). The publication that emerged from analysing the dataset can be found at https://doi.org/10.1145/3411764.3445291 (in press)
DOI: 10.17863/cam.87076
title: Research Data supporting ''Organic electronic transmembrane devices for hosting and monitoring 3D cell cultures''

description: Data set containing images from confocal microscope of samples from immunofluorescence staining (.tif files). Details for the antibodies used in each experiment are included in the methods section of the main manuscript. Also included are data from EIS (Electrical Impedance Spectroscopy) experiments. These have been exported into a single Excel file (.xls file). Each tab represents a different experiment. The data recorded are Impedance magnitude vs frequency. The phase data are also included. Different conditions are included in individual tabs, e.g. baseline, condition 1, condition 2, etc. See the main manuscript for more details.
DOI: 10.6084/m9.figshare.c.3625244_d1
title: MOESM1 of Application of the ATP assay to rapidly assess cleanliness of spacecraft surfaces: a path to set a standard for future missions

description: Additional file 1: Table S1. Detailed biological contamination range with respect to ATP molecule and spore counts as measured by NASA Standard Spore Assay.
DOI: 10.17863/cam.40214
title: Research data supporting "Examination of Ni-based superalloy/intermetallic diffusion couples containing multiphase regions"

description: SEM images, EDX files, X-ray diffraction data, DICTRA thermodynamic simulation macros and output files provided that support the figures presented in this manuscript. Files are organised according to which figure in the manuscript they pertain to. See the file metadata.txt for further description of the data files.
DOI: 10.6084/m9.figshare.c.3625256_d1
title: Additional file 1: of Persistency, medication prescribing patterns, and medical resource use associated with multiple sclerosis patients receiving oral disease-modifying therapies: a retrospective medical record review

description: Multiple sclerosis patients receiving oral disease-modifying therapies medical record review. Data file contains multiple-sclerosis patient medical record reviews. Each row is a distinct patient. Columns reflect information about the patient including baseline information as well as information specific to clinical visits. Subscripts in the field name found in line 1 ("_2", "_3", etc.) reflect the visit number. (XLSX 3109Â kb)
DOI: 10.15468/ub5yd2
title: Second_Record_of_Ficedula_superciliaris_in_Iran

description: This dataset documents the second recorded observation of the Ultramarine Flycatcher in Iran. The observation occurred at a small freshwater dam near the village of Pegu in Hormozgan Province during the Hormozgan Waterbird Census in February 2022. The Ultramarine Flycatcher is a migratory species typically breeding in the Himalayas and wintering in southern regions like India. This record, far from its usual range, provides valuable insights into its potential range expansion and migratory patterns.The observation was made by Mahsa Hashemi and Mohammadali Agha-Ebrahimi.
DOI: 10.6084/m9.figshare.c.3625265_d2
title: Additional file 5: of Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes

description: TABLE (.XLS) including the results of the functional enrichment analysis of the 17,437 human protein-coding genes included in each of the eight evolutionary stages. The results for each of the eight stages are presented in different spreadsheets. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3625265_d3
title: Additional file 2: of Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes

description: TABLE (.XLS) including the values of the gene pair-wise Spearman correlation and the cross-validation from the coexpression analysis, as well as the gene IDs to allow the reconstruction of a human coexpression network with 2298 proteins and 20,005 interactions. (XLSX 1048 kb)
DOI: 10.6084/m9.figshare.c.3625265_d4
title: Additional file 3: of Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes

description: Cytoscape file (format.cys, produced with Cytoscape version 3.1.0) that includes the complete coexpression network that is produced in this work and presented in Fig. 5 of the main article. This is a file to be opened only with Cytoscape program. (CYS 2316 kb)
DOI: 10.17863/cam.45745
title: Research data supporting "Visual appearance of chiral nematic cellulose-based photonic films: angular and polarization independent color response with a twist"

description: Supporting data for the article titled "Visual appearance of chiral nematic cellulose-based photonic films: angular and polarization independent color response with a twist". The article was accepted for publication in 2019 in the journal "Advanced Materials". Electronic supporting Information is available from the publisher (WILEY). The data is provided with a structured set of folders compressed in zip. Each folder corresponds to different types of measurements/simulations.
DOI: 10.17863/cam.90764
title: Research data supporting "Towards an open-domain chatbot for language practice"

description: This dataset is a set of dialogues generated by an artificial dialogue system, along with difficulty and quality annotations. The dialogue system used is a modified version of BlenderBot 1.0 (Roller et al., 2020). In each dialogue, the system is adjusted to generate messages at a particular difficulty level (as denoted by CEFR levels). The system always responds to the previously generated message as if in a 2-person conversation. These dialogues are then shown to 10 English language examiners, who are asked to annotate the dialogues according to the difficulty and quality of the messages. They are asked to give an overall CEFR for the dialogue, as well as binary labels to each individual message denoting whether the message is grammatical, sensible, and specific to the conversation. The .json file contains a list of dictionaries, with the following keys: - "intended_cefr" refers to the CEFR level which was used when generating the dialogue. - "generation_method" refers to one of 5 methods used in Tyen et al. (2022). - "dialogue_turns" is the list of generated dialogue messages. - "cefr_annotations" contains a dictionary of CEFR levels as determined by annotators. - "grammaticality_annotations" is a list of dictionaries containing binary labels, referring to whether an annotator considered a dialogue message to be grammatical. The order of the dictionaries corresponds to the order of the dialogue messages in "dialogue_turns". - "sensibleness_annotations" is structured in the same way as "grammaticality_annotations", but instead describes whether an annotator thought the message was sensible. - "specificity_annotations" is structured in the same way as "grammaticality_annotations", but instead describes whether an annotator thought the message was specific to the conversation. For more detailed descriptions of the adjustments used in each method, as well as definitions of grammaticality, sensibleness, and specificity, please see Tyen et al. (2022) or Adiwardana et al. (2020). Tyen, G., Brenchley, M., Caines, A., & Buttery, P. (2022). Towards an open-domain chatbot for language practice. 17th Workshop on Innovative Use of NLP for Building Educational Applications. Adiwardana, D., Luong, M.-T., So, D. R., Hall, J., Thoppilan, R., Yang, Z., Kulshreshtha, A., Nemade, G., Lu, Y., & Le, Q. V. (2020). Towards a human-like open-domain chatbot. arXiv:2001.09977 Roller, S., Dinan, E., Goyal, N., Ju, D., Williamson, M., Liu, Y., ... & Weston, J. (2021, April). Recipes for Building an Open-Domain Chatbot. In Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume (pp. 300-325).
DOI: 10.34740/kaggle/dsv/10190212
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.17863/cam.92867
title: Research data supporting 'Pollen-feeding delays reproductive senescence and maintains toxicity of Heliconius butterflies'

description: The dataset has information about Heliconius erato demophoon butterflies fed for 14d (young) and 45d (old) on three different diets: sugar only (N); sugar + supplement (C) ; sugar + pollen from flowers (F). These experiments were set up with 8 males and 8 females of similar size (~3 cm of forewing radius) per treatment (diet/age). At the end of the experiment, females were individually assay for fertility: number of laid eggs recorded and the total eggs per females collected for quantification of cyanogenic glucosides (CG) using target-metabolomic (HPLC-MS/MS). Recently ecloded butterflies (0d, unfed) was also collected as a baseline. All butterflies were also weighted and collected for target metabolomics at the end of the experiment.
DOI: 10.17863/cam.97035
title: Research data supporting: "Machine learning in predictive toxicology: investigating developmental and reproductive toxicity with transfer learning"

description: Research data supporting: "Machine learning in predictive toxicology: investigating developmental and reproductive toxicity with transfer learning". The dataset contains a total of 3245 chemicals related to DART (1662 positives, 1583 negatives) and were taken from several sources in the literature, including both in vitro and in vivo data. All SMILES for the compounds have salts and metals removed. For more details on the data sources see Table 10 in Chapter 4 of the thesis or the README sheet in the .xlsx file.
DOI: 10.17863/cam.15227
title: Research data supporting "The successful incorporation of Ag into single grain, Y–Ba–Cu–O bulk superconductors"

description: Data for the growth and analysis of single grains of YBCO-Ag, including DTA of the powder, photographs, optical microscope and SEM images, composition data and trapped field data.
DOI: 10.6084/m9.figshare.c.3625340_d1
title: Additional file 7: Table S6. of Phytohormone balance and stress-related cellular responses are involved in the transition from bud to shoot growth in leafy spurge

description: Differentially-expressed sugar transporter genes. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3625340_d2
title: Additional file 6: Table S5. of Phytohormone balance and stress-related cellular responses are involved in the transition from bud to shoot growth in leafy spurge

description: Central hubs for expression targets and small molecules based on SNEA. (XLSX 24Â kb)
DOI: 10.17863/cam.65066
title: Research data supporting Co-assembly of Cellulose Nanocrystals and Silk Fibroin into Photonic Cholesteric Films

description: The dataset is compressed into “.zip” files grouped in folders corresponding to the figures in which they were reported. All spectra were exported in format that are accessible with free software, and sometimes in additional format that require a license (Matlab, Origin, MS Excel).
DOI: 10.6084/m9.figshare.c.3625343_d2
title: MOESM3 of 
                     Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass

description: Additional file 3. Complete protein reports of Penicillium echinulatum strains in each condition. This table shows important data of proteomic analysis: number of peptides used for the identification and sequence coverage (%).
DOI: 10.6084/m9.figshare.c.3625355_d1
title: MOESM1 of Analysis of Axin2 expression and function in murine models for pancreatic cancer

description: Additional file 1. In the Supplemental Material Section results from beta-galactosidase stainings, blood glucose concentrations, body weights, tumor weights, as well as number of leucocytes, lymphocytes and monocytes plus ganulocytes are presented.
DOI: 10.6084/m9.figshare.c.3625358_d1
title: Additional file 1: Table S1. of Predicting multi-class responses to preoperative chemoradiotherapy in rectal cancer patients

description: Clinical information. (XLSX 19.5 kb)
DOI: 10.17863/cam.106652
title: Research data supporting `Flow regimes in emptying-filling boxes with two buoyancy sources of differing strengths and elevations'

description: Visualisations and buoyancy data for the emptying-filling box experiments. Experimental procedure and setup is described in the research article. Further details for interpreting the datafiles are included in the Readme document.
DOI: 10.17863/cam.54707
title: Research data for "Investigating the effect of a fluoroethylene carbonate additive on lithium deposition and the solid electrolyte interphase in lithium metal batteries using in situ NMR spectroscopy"

description: This dataset contains the raw data files required to run the mathematical model of isotope exchange and raw data files for EIS spectra simulation along with corresponding MATLAB codes for both. See the README files within the dataset for more information.