cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w8jq8r
title: Occurrence Download

description: A dataset listing the 31 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((17.19118 56.70524,20.70831 56.70524,20.70831 58.11149,17.19118 58.11149,17.19118 56.70524))",
 "HasCoordinate is true",
 "TaxonKey is Orthoptera",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 31 records were derived from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042164-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xyfhlu
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is UAZ Herpetology Collection"
 ]
}

 The dataset includes 61 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019219-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cedn7
title: Occurrence Download

description: A dataset containing 371127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Geometry POLYGON((-104.65483 20.17535,-104.65483 20.06187,-104.4765 19.9646,-104.63862 19.70522,-104.68725 19.62416,-104.62743 19.53357,-104.60313 19.49106,-104.60313 19.47283,-104.49987 19.40602,-104.46029 19.42962,-103.96566 19.26118,-103.77778 19.28286,-103.53932 19.26841,-103.30253 19.42459,-103.14876 19.50148,-102.94693 19.42459,-102.59269 19.21783,-102.26029 19.20337,-102.10854 19.19615,-101.89176 19.19615,-101.56658 19.17447,-101.13705 19.20852,-100.73077 19.17542,-100.54719 19.07912,-100.352 19.17471,-100.38563 19.04728,-100.02547 19.00016,-99.89714 18.84438,-99.74667 18.66681,-99.48785 18.56148,-99.25311 18.61866,-99.10613 18.65284,-98.93605 18.69232,-98.7508 18.7561,-98.73561 18.98387,-98.77206 19.10535,-98.80243 19.18128,-98.84798 19.23291,-98.99983 19.24202,-99.08214 19.31397,-99.42805 19.39387,-99.67709 19.5032,-99.76212 19.59735,-99.80464 19.63683,-99.83501 19.7158,-99.84109 19.91928,-99.81679 20.01039,-99.86842 20.13187,-99.91701 20.21387,-100.09306 20.36281,-100.37864 20.31105,-100.4819 20.08024,-100.62608 20.0768,-101.24419 20.09846,-101.75441 20.16224,-102.18263 20.24424,-102.74448 20.12883,-102.89025 20.12276,-103.15144 20.12579,-103.40958 20.19868,-103.58269 20.38394,-104.05647 20.86379,-104.18469 21.43986,-104.63862 22.08832,-105.14118 22.00727,-105.20603 21.55334,-104.94664 21.01836,-104.94664 20.69412,-104.80074 20.32126,-104.65483 20.17535))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is The taxon ID was not used in backbone matching",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 371127 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059590-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnpiuh
title: Occurrence Download

description: A dataset containing 352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hodgsonia Hook.f. & Thomson"
 ]
}

 The dataset includes 352 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021607-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ne2i4u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Geai des chênes 2004 - 2008 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 0 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025767-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2lsfy
title: Occurrence Download

description: A dataset containing 259 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Alouette lulu 2006 - 2010 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 259 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025715-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fohl9n
title: Occurrence Download

description: A dataset containing 860 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Suivi des oiseaux de passage : programme ACT - Programme ACT : Répartition Grive musicienne 1998 - 2002 Coordonnées GPS Lambert 93"
 ]
}

 The dataset includes 860 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025809-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjd7na
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nemausus sordidatus (Stål, 1858)"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012376-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5lmu2
title: Occurrence Download

description: A dataset containing 313 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Xipholena atropurpurea (Wied-Neuwied, 1820)"
 ]
}

 The dataset includes 313 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001279-180920211646547/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azyxts
title: Occurrence Download

description: A dataset containing 5222681 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 5222681 records from 1635 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001279-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive132167.20241212.9.2
title: Vibrio cortegadensis Lasa et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132170.20241212.9.2
title: Polymorphobacter multimanifer Fukuda et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132171.20241212.9.2
title: Rhodanobacter glycinis Madhaiyan et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132174.20241212.9.2
title: Zhizhongheella caldifontis Dong et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132175.20241212.9.2
title: Glycomyces fuscus Han et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132177.20241212.9.2
title: Tomitella cavernea Cheng et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132178.20241212.9.2
title: Enterobacter hormaechei subsp. xiangfangensis (Gu et al. 2014) Sutton et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132179.20241212.9.2
title: Pseudomonas aestusnigri Sánchez et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132180.20241212.9.2
title: Gracilibacillus alcaliphilus Hirota et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.6084/m9.figshare.28749635
title: Figure 1. Conceptual Framework of the Research

description: The figure in my article
DOI: 10.6084/m9.figshare.28749635.v1
title: Figure 1. Conceptual Framework of the Research

description: The figure in my article
DOI: 10.13145/bacdive132181.20241212.9.2
title: Microbacterium hydrothermale Zhang et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132182.20241212.9.2
title: Oligoflexus tunisiensis Nakai et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.3217/q0243-psm76
title: Benchmark data sets of minimal presentations of 2-parameter persistence modules

description: The repository contains a large collection of minimal presentations in scc2020 format (defined here) for various common bifiltrations in multi-parameter persistent homology. Specifically, it contains the minimal presentations of the datasets 



from the mpfree benchmark dataset (see https://doi.org/10.3217/xcs8c-hjm53)

from the Delaunay bifiltration project (see https://doi.org/10.1137/1.9781611977912.173)


Moreover, it provides some additional minimal presentations generated from a simple random process. For its description, see the paper

Tamal Dey, Jan Jendrysiak, Michael Kerber: Decomposing Multiparameter Persistence Modules, SoCG 2025

The naming convention of the files generally follows the pattern

[instance_type]_[instance_size]_[instance_number].scc_[dimension]

where the instance_size in most cases denotes the number of points in the bifiltration, and instance_number is between 1 and 5, as most instances are generated 5 times with different random seeds. "dimension" corresponds to the position in the initial chain complex on which the minimal presentation is computed. Unfortunately, this does not directly correspond to the homology dimension but it is reflected (because the scc2020 format is in decreasing order) For instance

S1_random_10000_3.scc_2

is the minimal presentation in homology dimension 0 for 10000 points sampled on the unit circle, and it is the third out of 5 such instances.

All presentation files are contained in the folder "instances". The folder "instances_small" contains a subset of the files for which benchmark files terminate much faster.

The file "README.txt" documents how the instances have been generated in more detail.
DOI: 10.3217/rxedk-qyq77
title: Benchmark data sets of minimal presentations of 2-parameter persistence modules

description: The repository contains a large collection of minimal presentations in scc2020 format (defined here) for various common bifiltrations in multi-parameter persistent homology. Specifically, it contains the minimal presentations of the datasets 



from the mpfree benchmark dataset (see https://doi.org/10.3217/xcs8c-hjm53)

from the Delaunay bifiltration project (see https://doi.org/10.1137/1.9781611977912.173)


Moreover, it provides some additional minimal presentations generated from a simple random process. For its description, see the paper

Tamal Dey, Jan Jendrysiak, Michael Kerber: Decomposing Multiparameter Persistence Modules, SoCG 2025

The naming convention of the files generally follows the pattern

[instance_type]_[instance_size]_[instance_number].scc_[dimension]

where the instance_size in most cases denotes the number of points in the bifiltration, and instance_number is between 1 and 5, as most instances are generated 5 times with different random seeds. "dimension" corresponds to the position in the initial chain complex on which the minimal presentation is computed. Unfortunately, this does not directly correspond to the homology dimension but it is reflected (because the scc2020 format is in decreasing order) For instance

S1_random_10000_3.scc_2

is the minimal presentation in homology dimension 0 for 10000 points sampled on the unit circle, and it is the third out of 5 such instances.

All presentation files are contained in the folder "instances". The folder "instances_small" contains a subset of the files for which benchmark files terminate much faster.

The file "README.txt" documents how the instances have been generated in more detail.
DOI: 10.13145/bacdive132183.20241212.9.2
title: Undibacterium squillarum Sheu et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132184.20241212.9.2
title: Permianibacter aggregans Wang et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132185.20241212.9.2
title: Nocardia bhagyanarayanae Vaddavalli et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132187.20241212.9.2
title: Serratia sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132188.20241212.9.2
title: Streptomyces hokutonensis Yamamura et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132189.20241212.9.2
title: Vibrio thalassae Tarazona et al. 2014

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132191.20241212.9.2
title: Virgibacillus oceani Yin et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132193.20241212.9.2
title: Belliella kenyensis Akhwale et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132194.20241212.9.2
title: Kribbella italica Everest et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132195.20241212.9.2
title: Pseudobacteriovorax antillogorgiicola McCauley et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132196.20241212.9.2
title: Sphingobium subterraneum Lee et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132197.20241212.9.2
title: Actinomadura rayongensis Phongsopitanun et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132198.20241212.9.2
title: Acinetobacter variabilis Krizova et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132199.20241212.9.2
title: Acinetobacter seifertii Nemec et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132201.20240916.9.1
title: Bacillus oleivorans Azmatunnisa et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132202.20241212.9.2
title: Agarivorans litoreus Park et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132203.20241212.9.2
title: Parabacteroides faecis Sakamoto et al. 2015

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.m2t6ks
title: Occurrence Download

description: A dataset containing 2352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Exochomus nigromaculatus (Goeze, 1777)"
 ]
}

 The dataset includes 2352 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010382-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccysytg
title: CCDC 887927: Experimental Crystal Structure Determination

description: Related Article: A. I. Poddel’skii, E. V. Ilyakina, I. V. Smolyaninov, G. K. Fukin, N. T. Berberova, V. K. Cherkasov, G. A. Abakumov|2014|Izv.Akad.Nauk SSSR,Ser.Khim.|63|923|doi:10.1007/s11172-014-0529-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccysz5v
title: CCDC 887938: Experimental Crystal Structure Determination

description: Related Article: M.J.Page,W.Y.Lu,R.C.Poulten,E.Carter,A.G.Algarra,B.M.Kariuki,S.A.Macgregor,M.F.Mahon,K.J.Cavell,D.M.Murphy,M.K.Whittlesey|2013|Chem.-Eur.J.|19|2158|doi:10.1002/chem.201202950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccysz6w
title: CCDC 887939: Experimental Crystal Structure Determination

description: Related Article: M.J.Page,W.Y.Lu,R.C.Poulten,E.Carter,A.G.Algarra,B.M.Kariuki,S.A.Macgregor,M.F.Mahon,K.J.Cavell,D.M.Murphy,M.K.Whittlesey|2013|Chem.-Eur.J.|19|2158|doi:10.1002/chem.201202950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccysz3s
title: CCDC 887936: Experimental Crystal Structure Determination

description: Related Article: M.J.Page,W.Y.Lu,R.C.Poulten,E.Carter,A.G.Algarra,B.M.Kariuki,S.A.Macgregor,M.F.Mahon,K.J.Cavell,D.M.Murphy,M.K.Whittlesey|2013|Chem.-Eur.J.|19|2158|doi:10.1002/chem.201202950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccysz4t
title: CCDC 887937: Experimental Crystal Structure Determination

description: Related Article: M.J.Page,W.Y.Lu,R.C.Poulten,E.Carter,A.G.Algarra,B.M.Kariuki,S.A.Macgregor,M.F.Mahon,K.J.Cavell,D.M.Murphy,M.K.Whittlesey|2013|Chem.-Eur.J.|19|2158|doi:10.1002/chem.201202950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.11634.72642
title: 📂 Article 08: Impedance Ratio Effect of the Trapezoidal Alluvial Hill on the Seismic Response of Ground Surface [In Persian] (2020)
DOI: 10.5517/ccysz2r
title: CCDC 887935: Experimental Crystal Structure Determination

description: Related Article: M.J.Page,W.Y.Lu,R.C.Poulten,E.Carter,A.G.Algarra,B.M.Kariuki,S.A.Macgregor,M.F.Mahon,K.J.Cavell,D.M.Murphy,M.K.Whittlesey|2013|Chem.-Eur.J.|19|2158|doi:10.1002/chem.201202950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.32684.88962
title: Scientific writing presentation
DOI: 10.13140/rg.2.2.33104.32000
title: 📂 Article 25: Amplification Pattern of Orthotropic Gaussian-Shaped Valley [In Persian] (2024)
DOI: 10.5517/ccysz1q
title: CCDC 887934: Experimental Crystal Structure Determination

description: Related Article: M.J.Page,W.Y.Lu,R.C.Poulten,E.Carter,A.G.Algarra,B.M.Kariuki,S.A.Macgregor,M.F.Mahon,K.J.Cavell,D.M.Murphy,M.K.Whittlesey|2013|Chem.-Eur.J.|19|2158|doi:10.1002/chem.201202950
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccysz7x
title: CCDC 887940: Experimental Crystal Structure Determination

description: Related Article: K.Wright,A.B.Alvarez,M.Crisma,A.Toffoletti,F.Formaggio,C.Toniolo|2012|Helv.Chim.Acta|95|2446|doi:10.1002/hlca.201200490
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.16327.10402
title: 📂 Article 26: Seismic Response of the Orthotropic Ground Surface Including Underground Circular Unlined Tunnel [In Persian] (2024)