cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19653927
title: Draft6

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19653927.v2
title: Draft6

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19653927.v1
title: Draft genome assemblies of four manakins (Aves: Pipridae)

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19653963
title: draft7

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19653963.v2
title: draft7

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19653963.v1
title: supplementary_tables.xlsx

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19669716
title: Heart Pain.xlsx

description: Congenital heart defect is one of the most common types of birth defects. Symptoms include abnormal heart rhythms, blue-tinted skin, shortness of breath, failure to feed or develop normally, and swollen body tissue or organs. Treatments include medications to lower blood pressure and control heart rate, heart devices, catheter procedures, and surgery.
DOI: 10.6084/m9.figshare.19669921
title: Additional file 2 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 2. Supplementary Tabl e 1.
DOI: 10.6084/m9.figshare.19669921.v1
title: Additional file 2 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 2. Supplementary Tabl e 1.
DOI: 10.6084/m9.figshare.19669924
title: Additional file 3 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 3. Supplementary Table 2.
DOI: 10.6084/m9.figshare.19669924.v1
title: Additional file 3 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 3. Supplementary Table 2.
DOI: 10.6084/m9.figshare.19669927
title: Additional file 4 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 4. Supplementary Table 3.
DOI: 10.6084/m9.figshare.19669927.v1
title: Additional file 4 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 4. Supplementary Table 3.
DOI: 10.6084/m9.figshare.19669930
title: Additional file 5 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 5. Supplementary Table 4.
DOI: 10.6084/m9.figshare.19669930.v1
title: Additional file 5 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 5. Supplementary Table 4.
DOI: 10.6084/m9.figshare.19669933
title: Additional file 6 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 6. Supplementary Table 5.
DOI: 10.6084/m9.figshare.19669933.v1
title: Additional file 6 of Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data

description: Additional file 6. Supplementary Table 5.
DOI: 10.6084/m9.figshare.19669940.v1
title: Additional file 3 of Prehospital triage tools across the world: a scoping review of the published literature

description: Additional file 3. Summary table of included articles.
DOI: 10.6084/m9.figshare.19669940
title: Additional file 3 of Prehospital triage tools across the world: a scoping review of the published literature

description: Additional file 3. Summary table of included articles.
DOI: 10.6084/m9.figshare.19669987
title: Additional file 1 of The ten-year risk of developing cardiovascular disease among public health workers in North-Central Nigeria using Framingham and atherogenic index of plasma risk scores

description: Additional file 1.
DOI: 10.6084/m9.figshare.19669987.v1
title: Additional file 1 of The ten-year risk of developing cardiovascular disease among public health workers in North-Central Nigeria using Framingham and atherogenic index of plasma risk scores

description: Additional file 1.
DOI: 10.6084/m9.figshare.19669999
title: Additional file 1 of Increased use of diagnostic CT imaging increases the detection of stage IA lung cancer: pathways and patient characteristics

description: Additional file 1: Supplementary table 1.Logistic regression analysis of 294 lung cancer patients, Silkeborg Regional Hospital 2016-2018. Multivariate analysis example.
DOI: 10.6084/m9.figshare.19669999.v1
title: Additional file 1 of Increased use of diagnostic CT imaging increases the detection of stage IA lung cancer: pathways and patient characteristics

description: Additional file 1: Supplementary table 1.Logistic regression analysis of 294 lung cancer patients, Silkeborg Regional Hospital 2016-2018. Multivariate analysis example.
DOI: 10.6084/m9.figshare.19670030
title: Additional file 1 of The impact of poor dental status and removable dental prosthesis quality on body composition, masticatory performance and oral health-related quality of life: a cross-sectional study in older adults

description: Additional file 1. Raw data of the present study
DOI: 10.6084/m9.figshare.19670030.v1
title: Additional file 1 of The impact of poor dental status and removable dental prosthesis quality on body composition, masticatory performance and oral health-related quality of life: a cross-sectional study in older adults

description: Additional file 1. Raw data of the present study
DOI: 10.6084/m9.figshare.19670032
title: Additional file 1 of The multivariate analysis of variance as a powerful approach for circular data

description: Additional file 1. R-code and example data to perform the statistical tests described in the manuscript.
DOI: 10.6084/m9.figshare.19670032.v1
title: Additional file 1 of The multivariate analysis of variance as a powerful approach for circular data

description: Additional file 1. R-code and example data to perform the statistical tests described in the manuscript.
DOI: 10.6084/m9.figshare.19670081.v1
title: Additional file 2 of Space-to-space very low frequency radio transmission in the magnetosphere using the DSX and Arase satellites

description: Additional file 2: Parameters for the 17 DSX–Arase conjunction events. Description: DSX–Arase conjunction parameters are as follows: Start_Time (UTC) = start time of the high-power transmission event. Duration (min) = duration of the high-power transmission event. Frequency (Hz) = frequency of the transmission. Lm_min = minimum McIlwain L-shell reached during the event. Lm_max = maximum McIlwain L-shell reached during the event. MLT_start (hr) = magnetic local time at the start of the event. MLT_stop (hr) = magnetic local time at the end of the event. MLAT_min (deg) = minimum magnetic latitude reached during the event. MLAT_max (deg) = maximum magnetic latitude reached during the event. Phys_Dist_min (km) = minimum separation distance between the DSX and Arase satellites reached during the event. FL_Perp_min (km) = minimum perpendicular distance between the DSX magnetic field line and Arase satellite reached during the event. FL_Parallel (km) = distance along the DSX field line between the DSX satellite and the point at which FL_Perp is minimum during the event.
DOI: 10.6084/m9.figshare.19670081
title: Additional file 2 of Space-to-space very low frequency radio transmission in the magnetosphere using the DSX and Arase satellites

description: Additional file 2: Parameters for the 17 DSX–Arase conjunction events. Description: DSX–Arase conjunction parameters are as follows: Start_Time (UTC) = start time of the high-power transmission event. Duration (min) = duration of the high-power transmission event. Frequency (Hz) = frequency of the transmission. Lm_min = minimum McIlwain L-shell reached during the event. Lm_max = maximum McIlwain L-shell reached during the event. MLT_start (hr) = magnetic local time at the start of the event. MLT_stop (hr) = magnetic local time at the end of the event. MLAT_min (deg) = minimum magnetic latitude reached during the event. MLAT_max (deg) = maximum magnetic latitude reached during the event. Phys_Dist_min (km) = minimum separation distance between the DSX and Arase satellites reached during the event. FL_Perp_min (km) = minimum perpendicular distance between the DSX magnetic field line and Arase satellite reached during the event. FL_Parallel (km) = distance along the DSX field line between the DSX satellite and the point at which FL_Perp is minimum during the event.
DOI: 10.6084/m9.figshare.19670047.v1
title: Additional file 11 of Effects of stressful life-events on DNA methylation in panic disorder and major depressive disorder

description: Additional file 11: Table S1. CpGs associated with weighted positive life-events in the meta-analysis of PD discovery and replication cases at p
DOI: 10.6084/m9.figshare.19670047
title: Additional file 11 of Effects of stressful life-events on DNA methylation in panic disorder and major depressive disorder

description: Additional file 11: Table S1. CpGs associated with weighted positive life-events in the meta-analysis of PD discovery and replication cases at p
DOI: 10.6084/m9.figshare.19670117
title: Additional file 2 of Incipient speciation between host-plant strains in the fall armyworm

description: Additional file 2: Table S1. The list of genes within the identified targets of sfC-specific selective sweeps.
DOI: 10.6084/m9.figshare.19670117.v1
title: Additional file 2 of Incipient speciation between host-plant strains in the fall armyworm

description: Additional file 2: Table S1. The list of genes within the identified targets of sfC-specific selective sweeps.
DOI: 10.6084/m9.figshare.19670110
title: Additional file 2 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 2: Table S1. List of transcription factors up- and downregulated in Ephedra californica.
DOI: 10.6084/m9.figshare.19670110.v1
title: Additional file 2 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 2: Table S1. List of transcription factors up- and downregulated in Ephedra californica.
DOI: 10.6084/m9.figshare.19670116
title: Additional file 3 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 3: Table S2. List of DE genes shared between the young ovules and bracts of Ephedra californica.
DOI: 10.6084/m9.figshare.19670116.v1
title: Additional file 3 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 3: Table S2. List of DE genes shared between the young ovules and bracts of Ephedra californica.
DOI: 10.6084/m9.figshare.19670119
title: Additional file 4 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 4: Table S3. List of transcription factors up- and downregulated in Ephedra antisyphilitica.
DOI: 10.6084/m9.figshare.19670119.v1
title: Additional file 4 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 4: Table S3. List of transcription factors up- and downregulated in Ephedra antisyphilitica.
DOI: 10.6084/m9.figshare.19670122
title: Additional file 5 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 5: Table S4. List of DE genes shared between the young ovules and bracts of Ephedra antisyphilitica.
DOI: 10.6084/m9.figshare.19670122.v1
title: Additional file 5 of Fleshy or dry: transcriptome analyses reveal the genetic mechanisms underlying bract development in Ephedra

description: Additional file 5: Table S4. List of DE genes shared between the young ovules and bracts of Ephedra antisyphilitica.
DOI: 10.6084/m9.figshare.19670123
title: Additional file 1 of Cross-sectional geometry predicts failure location in maize stalks

description: Additional file 1. Internodal stress calculator.
DOI: 10.6084/m9.figshare.19670123.v1
title: Additional file 1 of Cross-sectional geometry predicts failure location in maize stalks

description: Additional file 1. Internodal stress calculator.
DOI: 10.6084/m9.figshare.19670161
title: Additional file 2 of Markers of kidney function, genetic variation related to cognitive function, and cognitive performance in the UK Biobank

description: Additional file 2: Supplementary Data 1. Cohort descriptive statistics: The total number of participants (% female) and mean, minimum and maximum age per cohort are indicated. The cohort N presented here is the number of individuals that contributed to the meta-analysis.
DOI: 10.6084/m9.figshare.19670161.v1
title: Additional file 2 of Markers of kidney function, genetic variation related to cognitive function, and cognitive performance in the UK Biobank

description: Additional file 2: Supplementary Data 1. Cohort descriptive statistics: The total number of participants (% female) and mean, minimum and maximum age per cohort are indicated. The cohort N presented here is the number of individuals that contributed to the meta-analysis.
DOI: 10.6084/m9.figshare.19670164
title: Additional file 3 of Markers of kidney function, genetic variation related to cognitive function, and cognitive performance in the UK Biobank

description: Additional file 3: Supplementary Data 2. Single nucleotide polymorphisms used for constructing general cognitive function polygenic score with their corresponding summary statistics and imputation quality score.
DOI: 10.6084/m9.figshare.19670164.v1
title: Additional file 3 of Markers of kidney function, genetic variation related to cognitive function, and cognitive performance in the UK Biobank

description: Additional file 3: Supplementary Data 2. Single nucleotide polymorphisms used for constructing general cognitive function polygenic score with their corresponding summary statistics and imputation quality score.
DOI: 10.6084/m9.figshare.19670188
title: Additional file 1 of Use of MS-GUIDE for identification of protein biomarkers for risk stratification of patients with prostate cancer

description: Additional file 1: Table S1. Pre-selected protein candidates that were monitored using PRM-MS. Table S2. A subpopulation of the Hamburg (HH) cohort (pre-operation serum was used for protein glycocapture and PRM-MS). Table S3. Sequ ences of heavy-isotope labeled synthetic peptides that were used for spectral library generation. Table S4. Peptide isolation list for PRM measurements of glycocapture. Table S5. Antibody affinities of generated ELISA sandwich pairs. Table S6. Dynamic range and precision of developed immunoassays. Table S7. Clinical data of Hamburg cohort patients used for random forest classification. Table S8. Clinical data of ProCOC patients used for protein signature validation. Table S9. ELISA data used for model generation (Hamburg) and validation (ProCOC).
DOI: 10.6084/m9.figshare.19670188.v1
title: Additional file 1 of Use of MS-GUIDE for identification of protein biomarkers for risk stratification of patients with prostate cancer

description: Additional file 1: Table S1. Pre-selected protein candidates that were monitored using PRM-MS. Table S2. A subpopulation of the Hamburg (HH) cohort (pre-operation serum was used for protein glycocapture and PRM-MS). Table S3. Sequ ences of heavy-isotope labeled synthetic peptides that were used for spectral library generation. Table S4. Peptide isolation list for PRM measurements of glycocapture. Table S5. Antibody affinities of generated ELISA sandwich pairs. Table S6. Dynamic range and precision of developed immunoassays. Table S7. Clinical data of Hamburg cohort patients used for random forest classification. Table S8. Clinical data of ProCOC patients used for protein signature validation. Table S9. ELISA data used for model generation (Hamburg) and validation (ProCOC).
DOI: 10.6084/m9.figshare.19670209
title: Additional file 2 of PTEN mutant non-small cell lung cancer require ATM to suppress pro-apoptotic signalling and evade radiotherapy

description: Additional file 2. Table S1 table_SEER_REER-colony_ formation.
DOI: 10.6084/m9.figshare.19670209.v1
title: Additional file 2 of PTEN mutant non-small cell lung cancer require ATM to suppress pro-apoptotic signalling and evade radiotherapy

description: Additional file 2. Table S1 table_SEER_REER-colony_ formation.
DOI: 10.6084/m9.figshare.19670281
title: Additional file 1 of Genome-wide association mapping and genomic prediction for kernel color traits in intermediate wheatgrass (Thinopyrum intermedium)

description: Additional file 1. Scripts and additional tables generated during the course of the study. There are four sheets in this file. Name and description of each sheet is provided below: ImageJ macro: Macro script used in the ImageJ program to obtain L*, a*, and b* values from seed images. Phenotypic data: L*, a*, b* values obtained from ImageJ and visual rating scores pre-data adjustment. Trait variance components: Genetic and non-genetic variance components generated using a mixed model equation. Narrow sense heritabilities: Narrow sense trait heritability estimates for the kernel color traits. PC model selection BIC values: BIC values calculated by GAPIT when using up to 10 PC axes as cofactors in the GWAS model to evaluate model fit. NCBI BLAST results: Protein BLAST results when intermediate wheatgrass candidate gene sequences were searched against the NCBI protein database. BLAST with wheat R genes: BLAST results when intermediate wheatgrass candidate gene sequences were searched against the three genes in wheat known to be involved in controlling kernel color in wheat.