cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3635147_d1
title: Additional file 7: Table S8. of Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)

description: The predicted effects of InDels in DEGs. The sequence variations (i.e. InDels) were first detected between sterile and fertile alleles and their potential effects (i.e. causing loss of gene function or codon change) were then predicted by the software SnpEff. (XLSX 15 kb)
DOI: 10.15468/h8y7f5
title: EMBRAPA FLORESTAS | Soil macrofauna communities in various land uses in and neighboring the Mata do Uru Private Reserve, Lapa, Paraná state, Brazil

description: Soil macrofauna communities were evaluated in four land uses in the Mata do Uru Private Reserve, and in a conventionally managed annual grain crop production system neighboring the reserve, in February 2015 and July 2016. In the Uru Reserve, samples were taken in: 1) a native Atlantic Forest (Araucaria forest) fragment; 2) a 10-year-old regeneration plot, planted with native trees; 3) a native grassland; and 4) a grass lawn. Six samples were taken in each land use on each date, using the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF), where soil (down to 20 cm depth) and litter fauna were hand-sorted from monoliths of 25x25 cm, and the abundance of a total of 42 taxa was assessed.
DOI: 10.6084/m9.figshare.c.3634922_d3
title: Additional File 3: Database S1:

description: E. coli. Excel file containing GEM-PRO related information for E. coli. (XLSX 13.3 mb)
DOI: 10.6084/m9.figshare.c.3634922_d2
title: Additional File 2: Database S2:

description: T. maritima. Excel file containing GEM-PRO related information for T. maritima. (XLSX 775 kb)
DOI: 10.6084/m9.figshare.c.3634787_d8
title: Additional file 1: Table S1. of Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity

description: Gene categorization. Shown here are the chromosomal locations (NCBI build 36) used to assign a SNP to a gene. Chromosomal location refers to the gene’s boundaries +/− a 500 kb window around it. The number of SNPs that were categorized to each of the 12 candidate obesity genes are also shown. Known biological roles of genes were found using GeneCards database (www.genecards.org, Accessed March 31, 2015) or from the literature sources cited. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3634787_d9
title: Additional file 8: Table S4. of Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity

description: Degree, betweenness centrality and closeness centrality values of 709 SNPs within the largest component of the network at the percolation threshold. Shown here are the values for degree, betweenness centrality and closeness centrality of 709 SNPs within the largest component of the Statistical Epistasis Network at the percolation threshold. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3634787_d3
title: Additional file 2: Table S2. of Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity

description: Mutual information values for 58 SNPs within the network at the percolation threshold. Shown here are the statistically significant mutual information values (p-valueâ
DOI: 10.6084/m9.figshare.c.3634787_d2
title: Additional file 3: Table S3. of Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity

description: Information gain values for 1241 edges within the network at the percolation threshold. Shown here are the statistically significant information gain values (p-valueâ
DOI: 10.15468/dl.b3zwqx
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Glossanodon semifasciatus (Kishinouye, 1904)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 135 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032126-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634496_d14
title: Additional file 10: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing differential expression genes involved in phytohormone metabolism and signal transduction. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3634496_d12
title: Additional file 3: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing statistics of raw sequencing reads. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3634496_d13
title: Additional file 11: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing differential expression genes involved in nod factor signaling pathways during early symbiotic nodulation. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3634496_d11
title: Additional file 14: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing primer sequences used for Real Time PCR. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3634496_d9
title: Additional file :5 of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing housekeeping genes. These transcripts were identified as the most stably expressed across all conditions. (XLSX 102Â kb)
DOI: 10.6084/m9.figshare.c.3634496_d8
title: Additional file 6: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing differentially expressed transcripts potentially regulated by miRNAs. (XLSX 91Â kb)
DOI: 10.15468/6byztf
title: EMBRAPA FLORESTAS | Soil macrofauna community in a site with high and low population of Scarab beetle larvae in Florínea, São Paulo, Brazil

description: The soil macrofauna community was assessed in a no-tillage annual grain production farm with areas having a high and low population of Scarab beetle larvae in Florínea, São Paulo state, Brazil. The site had been in maize production, and the sampling occurred after the maize harvest in March 2005, using the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF). Monoliths were hand-sorted for all litter and soil-dwelling taxa (down to 40 cm depth), and the abundance of a total of 42 taxa assessed.
DOI: 10.6084/m9.figshare.c.3634496_d6
title: Additional file 4: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing summary of de novo assembly results. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3634496_d4
title: Additional file 7: of 
                     De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway

description: Table listing transcripts differentially expressed between abiotic stress and standard. (XLSX 1117Â kb)
DOI: 10.6084/m9.figshare.c.3634481_d5
title: Additional file 3: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: Frequency of identified SSR motifs. (XLS 57Â kb)
DOI: 10.6084/m9.figshare.c.3634481_d6
title: Additional file 5: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: 1,134 DEGs assigning to 113 KEGG pathways. (XLS 53Â kb)
DOI: 10.6084/m9.figshare.c.3634481_d4
title: Additional file 2: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: 21,898 cranberry unigenes assigning to 128 KEGG pathways. (XLS 50Â kb)
DOI: 10.6084/m9.figshare.c.3634481_d3
title: Additional file 6: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: Primer sequences of cranberry selected for qRT-PCR analysis. (XLS 16Â kb)
DOI: 10.6084/m9.figshare.c.3634481_d1
title: Additional file 4: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: Primer sequences of cranberry selected for SSR marker validation. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3634481_d2
title: Additional file 1: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: 57,331 All-unigene sequences in cranberry fruit transcriptome, available at https://mynotebook.labarchives.com/ , DOI: 10.6070/H4FB50ZC. (FA 44805Â kb)
DOI: 10.17632/jk9yzybrj8.1
title: Vegetative propagation data

description: This is open data accompanying the manuscript titled "Effects of vegetative propagation on protein content and bioactivity of the red seaweed Palmaria palmata" submitted for review to Food Chemistry.
DOI: 10.17632/jk9yzybrj8.2
title: Vegetative propagation data

description: This is open data accompanying the article "Effects of vegetative propagation on protein content and bioactivity of the red seaweed Palmaria palmata" published in Food Chemistry.
DOI: 10.17632/7fbnxcbnhp.1
title: Sugarcane Disease Dataset

description: Image dataset plays important role across various fields including computer vision machine learning and research. The dataset helps researchers, developers and professionals to train models and algorithms. This dataset will help farmers and researchers to identify, classify various sugarcane diseases affecting sugarcane. With help of analyzing the images the researcher can develop accurate disease detection algorithms and warning systems which will help preventing widespread crop damage and financial loss of farmers. The sugarcane disease dataset consists of 3358 high resolution images of sugarcane leaves and are stored in JPEG format. The dimension of the images is 1000 x 1000. Images categorized into 7 categories with five disease categories, a dried leaves and a healthy leaves category. Sugarcane dataset ensure that various common sugarcane diseases are covered ensuring easy access. Images having 96 DPI (dots per inch) collected through field visit and capturing from different angles. Images provided are clear and detailed visual representation of sugarcane samples.
DOI: 10.17632/7fbnxcbnhp.2
title: Sugarcane Disease Dataset

description: Image dataset plays important role across various fields including computer vision machine learning and research. The dataset helps researchers, developers and professionals to train models and algorithms. This dataset will help farmers and researchers to identify, classify various sugarcane diseases affecting sugarcane. With help of analyzing the images the researcher can develop accurate disease detection algorithms and warning systems which will help preventing widespread crop damage and financial loss of farmers. The sugarcane disease dataset consists of 3358 high resolution images of sugarcane leaves and are stored in JPEG format. The dimension of the images is 1000 x 1000. Images categorized into 7 categories with five disease categories, a dried leaves and a healthy leaves category. Sugarcane dataset ensure that various common sugarcane diseases are covered ensuring easy access. Images having 96 DPI (dots per inch) collected through field visit and capturing from different angles. Images provided are clear and detailed visual representation of sugarcane samples.
DOI: 10.17632/jhjxfjjfj8.1
title: Spectral reflectance of soil samples with different particle sizes

description: A total of 449 soil samples were collected from the study area. Each sample was crushed and sieved using soil screens with different mesh sizes (150, 80, 60, 45, 35, and 30 mesh), resulting in soil samples with particle sizes of 0.1, 0.2, 0.3, 0.4, 0.5, and 0.6 mm, respectively, which were labeled as DA1, DA2, DA3, DA4, DA5, and DA6. The reflectance images of the soil samples with varying particle sizes were captured using a Specim IQ hyperspectral imaging system, and the raw data were subsequently converted into reflectance data.
The Mahalanobis distance method was employed to analyze the measured total nitrogen (TN) content of all soil samples. Outlier samples exceeding three times the average Mahalanobis distance were excluded. This process resulted in the removal of 144 soil spectral samples from 24 sampling points across the six particle sizes, leaving a total of 2,550 soil spectral samples from 425 sampling points with six particle sizes.
The resulting dataset comprises reflectance information for 2,550 soil spectral samples across six particle sizes from 425 retained sampling points.
DOI: 10.17632/8sc8n33tmh.1
title: Zinc chelates of glycine as a growth and survival enhancer in hybrid grouper and whiteleg shrimp

description: The dataset documented enhanced growth performance of both the hybrid grouper and whiteleg shrimp which suggests that dietary supplementation with a zinc chelate glycine can promote better growth rates, essential for meeting the increasing demand for aquatic food products.
DOI: 10.6084/m9.figshare.c.3634274_d18
title: Additional file 17: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Horizontally transferred genes of bacterial origin in Bemisia tabaci. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3634274_d17
title: Additional file 12: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Number of genes potentially involved in detoxification and insecticide resistance. (XLSX 12 kb)
DOI: 10.17632/8sc8n33tmh.2
title: Zinc chelates of glycine as a growth and survival enhancer in hybrid grouper and whiteleg shrimp

description: The dataset documented enhanced growth performance of both the hybrid grouper and whiteleg shrimp which suggests that dietary supplementation with a zinc chelate glycine can promote better growth rates, essential for meeting the increasing demand for aquatic food products.
DOI: 10.6084/m9.figshare.c.3634274_d15
title: Additional file 18: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Horizontally transferred genes of fungal origin in Bemisia tabaci. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3634274_d16
title: Additional file 11: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Number of cathepsin genes in Bemisia tabaci as compared to other arthropods. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3634274_d13
title: Additional file 19: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Immunity-related genes in Bemisia tabaci. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3634274_d14
title: Additional file 7: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Bemisia tabaci genome annotation and comparison with fruit fly. (XLSX 11 kb)
DOI: 10.17632/8yymnvrgbg.1
title: Supplementary File

description: Supplementary material for publication titled Whole genome sequence data of Bacillus anthracis strain 3B1 isolated from rice paddy soil.
DOI: 10.6084/m9.figshare.c.3634274_d12
title: Additional file 15: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Endosymbiont genome assembly and annotation. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3634274_d10
title: Additional file 9: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Domain count of expanded families in Bemisia tabaci. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3634274_d11
title: Additional file 5: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Repeat sequences in the Bemisia tabaci genome assembly. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3634274_d9
title: Additional file 13: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Cytochrome P450 genes in Bemisia tabaci. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3634274_d8
title: Additional file 10: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Differentially expressed cathepsin and clustered unknown genes in Bemisia tabaci after acquisition of TYLCV or ToCV for 24, 48, and 72Â h, respectively. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3634274_d6
title: Additional file 20: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: List of genes in the miRNA and siRNA pathways in the Bemisia tabaci genome. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3634274_d7
title: Additional file 16: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Amino acid biosynthesis pathway in B. tabaci and its endosymbionts. (XLSX 19 kb)
DOI: 10.15468/hcj7af
title: EMBRAPA FLORESTAS | Soil macrofauna community in areas with high and low population of Scarab beetle larvae in Lerroville, Paraná, Brazil

description: The soil macrofauna community was assessed in a long-term (28 years) no-tillage annual grain production farm with areas having a high and a low population of Scarab beetle larvae in Lerroville, Londrina municipality, Paraná state, Brazil. The site had been Sampling occurred after the soybean harvest in April 2003, using the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF). Monoliths were hand-sorted for all litter and soil-dwelling taxa (down to 30 cm depth), and the abundance of a total of 42 taxa assessed.
DOI: 10.17632/f7c75syg2f.1
title: Codes for the vehicle simulation with Simulink and for the driving cycle with Matlab

description: These codes are for the vehicle simulation with Simulink and for the driving cycle with Matlab to consider the vehicle type on the driving characteristic parameters.
DOI: 10.6084/m9.figshare.c.3634280_d3
title: MOESM2 of FGFR1 and NTRK3 actionable alterations in â  Wild-Typeâ   gastrointestinal stromal tumors

description: Additional file 2: Table S6. List of Mutations Identified in non-WT Patients. Complete tabulation of genomic alterations found in non-WT patients, with VUSs filtered for deleterious effects according to Additional files 1 and 2.
DOI: 10.6084/m9.figshare.c.3634274_d5
title: Additional file 3: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Summary of RNA-Seq dataset. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3634274_d4
title: Additional file 4: of The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

description: Mapping statistics of Bemisia tabaci mRNA sequences to the B. tabaci genome. (XLSX 11 kb)
DOI: 10.17632/2vwv7w37j5.1
title: RT-qPCR assessment of mRNA expression (ERBB4, NRG4 and major lipogenesis genes) in human liver with histologic liver images and biochemical analysis of blood serum

description: ERBB4 and NRG4 have been shown to ameliorate steatosis and prevent the development of non-alcoholic steatohepatitis in mouse models, but little to nothing is known about their role in non-alcoholic fatty liver disease (NAFLD) in humans. This data is the first expression study of ERBB4, NRG4, ACACA, FASN, FTO, SREBF1 and TFEB mRNAs in the liver biospecimens of individuals with obesity, type 2 diabetes and biopsy-proven NAFLD. 
Against a background of increased BMI, ERBB4 and NRG4 mRNA levels decreased, while ACACA mRNA levels increased. No deregulation of the analyzed transcripts was detected in NAFLD (link to the article). 

The data also contains information on detailed blood biochemical parameters, the anthropometric information (including diagnosis) and liver histology images that can be used for various meta-analyses and the development of prognostic biomarkers. 

Verification of the diagnosis of patients was performed at the Regional Clinical Hospital in Kaliningrad, Russia. Patients underwent standard dietary adjustments before elective abdominal surgery, which was performed under general anesthesia. All obese patients discontinued medications affecting carbohydrate and lipid metabolism parameters 36 hours before surgery. A fasting blood sample was obtained the morning before surgery. During surgery, liver samples of up to 0.5 mL were collected for RNA extraction (immediately placed in 600 μL RNAlater solution (Ambion, USA)) and up to 1 mL for histologic analysis (immediately fixed in 5 mL neutral buffered formalin). The study was conducted in accordance with the World Medical Association Declaration of Helsinki (2000) and the Protocol to the Convention on Human Rights and Biomedicine (1999). The study was approved by the local ethics committee of the Immanuel Kant Baltic Federal University: IKBFU Ethics Committee Conclusion №40 of 26.06.2023. All of the participants provided signed informed consent. All interventions were performed by highly qualified medical professionals and posed no risk to the patients' health.

Inclusion criteria: individuals over 21 years who have received a diagnosis of their health condition from an official healthcare provider and have been referred for planned abdominal surgery, and who declared their willingness to participate in the study and donate a small tissue sample and their blood by giving informed written consent. 

Exclusion criteria: presence of infectious liver disease, concomitant somatic and infectious diseases in the acute inflammatory stage, presence of a known HIV infection, presence of malignant or benign neoplasms, age under 21 years, refusal to undergo medical and laboratory examinations during the study, or refusal to sign the informed consent form.