cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17089196.v3
title: Metabarcoding analysis of marine zooplankton confirms the ecological role of a sheltered bight along an exposed continental shelf.

description: Zooplankton plays an essential role in marine ecosystems as the link between primary producers (phytoplankton) and higher trophic levels in food webs, and as a dynamic pool of recruits for invertebrates and fish. Zooplankton communities are diverse with a patchy distribution at different spatial scales, influenced by oceanographic processes. The continental shelf of eastern South Africa is narrow and exposed to the western-boundary Agulhas Current, with some shelter against strong directional flow provided by the broader KwaZulu-Natal (KZN) Bight, a coastal offset adjacent to an estuary. We compared zooplankton species richness, diversity and relative abundance of key taxa among sheltered and exposed shelf areas using metabarcoding and community analysis, to explore the ecological role of the bight in a highly dynamic ocean region. Metabarcoding recovered higher richness and diversity at a finer resolution than could previously be achieved with traditional microscopy. Of 271 operational taxonomic units (OTUs) recovered through metabarcoding, 63% could be matched with &gt;95% sequence similarity to reference barcodes. OTUs were dominated by malacostracan crustaceans (161 spp.), ray-finned fishes (45 spp.) and copepods (28 spp.). Species richness, diversity and the relative abundance of key taxa differed between sheltered and exposed shelf areas. Lower species richness in the bight was partly attributed to structurally homogenous benthic habitats, and an associated reduction of meroplanktonic species originating from local benthic-pelagic exchange. High relative abundance of a ray-finned fish in the bight, as observed fish eggs and read counts, confirmed that the bight is an important fish spawning area. Overall, zooplankton metabarcoding outputs were congruent with findings of earlier ecological research using more traditional methods of observation.
DOI: 10.6084/m9.figshare.17089196.v2
title: Marine zooplankton community analysis confirms the ecological role of a sheltered bight along a narrow shelf exposed to the Agulhas Current.

description: Zooplankton play an essential role in marine ecosystems as the linkage between primary producers (phytoplankton) and higher trophic levels in food webs, and by forming a dynamic pool of recruits for multiple invertebrate and fish species. Zooplankton have high taxonomic diversity and abundance, and are distributed patchily in oceans, facilitated by a combination of physical processes and biological interactions. At larger spatial scales, ocean currents are key determinants of zooplankton species composition and abundance. The Agulhas Current is one of the strongest western boundary currents in the world, flowing southwestwards along the edge of a narrow, exposed shelf off eastern South Africa. A single sizable bight (KwaZulu-Natal Bight) along the coastline provides a shallow productive enclave, sheltered against strong directional flow. We used metabarcoding and community analysis of plankton collected near the surface of four cross-shelf transects in sheltered (KZN Bight) and exposed shelf habitats to test hypotheses that: species richness and relative abundance differ between sheltered- and exposed shelf areas; sub-mesoscale processes (eddies, counter-currents) retain zooplankton in the sheltered bight; and that the bight acts as a spawning and nursery area. Metabarcoding recovered much higher species richness and diversity at a finer species-level resolution than could previously be achieved with microscopy. Of the 271 species clusters recovered through metabarcoding, 63% could be attributed to species based on barcode reference databases. Species richness was dominated by crustaceans from the Malacostraca class (161 spp.), ray-finned fishes (45 spp.) and copepods (28 spp.). Connectivity analyses confirmed the retention of zooplankton in the sheltered bight by semi-permanent current circulation patterns. Ray-finned fishes had the highest relative abundance in the sheltered bight, comprising mainly of pelagic fish (<i>Scomber japonicus</i>) eggs, thus confirming the importance of the bight as a spawning area along a narrow continental shelf exposed to strong directional currents. The intersection of metabarcoding, community analysis and physical oceanography is a promising new direction for marine ecological research in the Western Indian Ocean and beyond.
DOI: 10.6084/m9.figshare.19761550
title: RT-PCR-Results

description: the effect of bilobalide on PC-3 cells——through upregulating the mRNA of NQO1 to inhibit the proliferation of PC-3cells
DOI: 10.6084/m9.figshare.19761550.v1
title: RT-PCR-Results

description: the effect of bilobalide on PC-3 cells——through upregulating the mRNA of NQO1 to inhibit the proliferation of PC-3cells
DOI: 10.25934/pr00005239.1
title: Available IPD datapackage for study 'A Prospective Randomised, Open Label, Blinded Endpoint (PROBE) Study to Evaluate DUAL Antithrombotic Therapy With Dabigatran Etexilate (110mg and 150mg b.i.d.) Plus Clopidogrel or Ticagrelor vs. Triple Therapy Strategy With Warfarin (INR 2.0 - 3.0) Plus Clopidogrel or Ticagrelor and Aspirin in Patients With Non Valvular Atrial Fibrillation (NVAF) That Have Undergone a Percutaneous Coronary Intervention (PCI) With Stenting'

description: The main objective of this study is to compare a Dual Antithrombotic Therapy (DAT) regimen of 110mg dabigatran etexilate b.i.d. plus clopidogrel or ticagrelor (110mg dabigatran etexilate (DE) DAT) and 150mg dabigatran etexilate b.i.d. plus clopidogrel or ticagrelor (150mg DE-DAT) with a Triple Antithrombotic Therapy (TAT) combination of warfarin plus clopidogrel or ticagrelor plus Aspirin (ASA) <= 100mg once daily (warfarin-TAT) in patients with Atrial Fibrillation that undergo a PCI with stenting (elective or due to an Acute Coronary Syndrome). The study aims to show non-inferiority of each dose of DE-DAT when compared to Warfarin-TAT in terms of safety. Safety will be determined by comparing the rates of bleeding events, assessed using the modified International Society of Thrombosis and Haemostasis classification of Major Bleeding and Clinically Relevant Non Major Bleeding Events.
DOI: 10.5281/zenodo.6545132
title: CC, Master Excel Supplement STATIC

description: Excel of Excess Death Comparison
DOI: 10.5281/zenodo.6545131
title: CC, Master Excel Supplement STATIC

description: Excel of Excess Death Comparison
DOI: 10.6084/m9.figshare.19732268
title: GPS data from Ocean nomads or island specialists? Culturally driven habitat partitioning contrasts in scale between geographically isolated sperm whale populations

description: GPS coordinates of the research vessel used for distribution map
DOI: 10.6084/m9.figshare.19732268.v1
title: GPS data from Ocean nomads or island specialists? Culturally driven habitat partitioning contrasts in scale between geographically isolated sperm whale populations

description: GPS coordinates of the research vessel used for distribution map
DOI: 10.6084/m9.figshare.19732274
title: Acoustic data from Ocean nomads or island specialists? Culturally driven habitat partitioning contrasts in scale between geographically isolated sperm whale populations

description: Caribbean codas used for the acoustic analysis
DOI: 10.6084/m9.figshare.19732274.v1
title: Acoustic data from Ocean nomads or island specialists? Culturally driven habitat partitioning contrasts in scale between geographically isolated sperm whale populations

description: Caribbean codas used for the acoustic analysis
DOI: 10.5281/zenodo.6545142
title: SheepGut assembly graph used in the strainFlye paper

description: SheepGut assembly graph, generated with metaFlye version 2.8 as described in the paper. This is a GFA file. We provide this graph here (in addition to the raw SheepGut sequencing data, which is located elsewhere) in order to simplify reproduction of the analyses shown in the report.
DOI: 10.5281/zenodo.6545141
title: SheepGut assembly graph used in the strainFlye paper

description: SheepGut assembly graph, generated with metaFlye version 2.8 as described in the paper. This is a GFA file. We provide this graph here (in addition to the raw SheepGut sequencing data, which is located elsewhere) in order to simplify reproduction of the analyses shown in the report.
DOI: 10.6084/m9.figshare.19761631
title: Data specification

description: Encouraging Gender-Inclusive Acceptance of Multipurpose National-Identity Smart Cards
DOI: 10.6084/m9.figshare.19761580
title: Datasets.xlsx

description: Encouraging Gender-Inclusive Acceptance of Multipurpose National-Identity Smart Cards
DOI: 10.6084/m9.figshare.19761496.v1
title: Engineering optimization

description: Engineering optimizationt
DOI: 10.6084/m9.figshare.19761664
title: derivative9h4server.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: The derivatives of the shape functions, used in the stiffness matrix, are stored in this file.
DOI: 10.6084/m9.figshare.19761664.v1
title: derivative9h4server.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: The derivatives of the shape functions, used in the stiffness matrix, are stored in this file.
DOI: 10.6084/m9.figshare.19761667
title: shallowlabh4server.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the preprocessor file which contains the stiffness matrix and the load vector.
DOI: 10.6084/m9.figshare.19761667.v1
title: shallowlabh4server.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the preprocessor file which contains the stiffness matrix and the load vector.
DOI: 10.6084/m9.figshare.19761670
title: conedirac.mat from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the initial guess data file for generating the solution in Figure 7(c).
DOI: 10.6084/m9.figshare.19761673
title: Main.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the file that should be run to obtain the desired simulation results.
DOI: 10.6084/m9.figshare.19761673.v1
title: Main.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the file that should be run to obtain the desired simulation results.
DOI: 10.6084/m9.figshare.19761670.v1
title: conedirac.mat from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the initial guess data file for generating the solution in Figure 7(c).
DOI: 10.6084/m9.figshare.19761679
title: shapefunction2.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: The shape functions associated with an element (C1 continuous non conforming plate bending elements) are stored in this file.
DOI: 10.6084/m9.figshare.19761679.v1
title: shapefunction2.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: The shape functions associated with an element (C1 continuous non conforming plate bending elements) are stored in this file.
DOI: 10.6084/m9.figshare.19761676
title: gauss legendre.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: The weights and Gauss points for the Gauss-Legendre numerical integration are stored in this file.
DOI: 10.6084/m9.figshare.19761676.v1
title: gauss legendre.m from Defects and metric anomalies in Föppl–von Kármán surfaces

description: The weights and Gauss points for the Gauss-Legendre numerical integration are stored in this file.
DOI: 10.6084/m9.figshare.19761682
title: saddledirac.mat from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the initial guess data file for generating the solution in Figure 7(d).
DOI: 10.6084/m9.figshare.19761682.v1
title: saddledirac.mat from Defects and metric anomalies in Föppl–von Kármán surfaces

description: This is the initial guess data file for generating the solution in Figure 7(d).
DOI: 10.6084/m9.figshare.19761628.v1
title: GCMS data

description: Data utilised for the analysis and conclusions for the current article: <br> Tryptophan Levels as a Marker of Auxins and Nitric Oxide signaling <br> Authored by: Pedro López-Gómez; Edward Smith; Pedro Bota; Alfonso Cornejo; Marina Urra; Javier Buezo; Jose F. Moran
DOI: 10.6084/m9.figshare.19761628
title: GCMS data

description: Data utilised for the analysis and conclusions for the current article: <br> Tryptophan Levels as a Marker of Auxins and Nitric Oxide signaling <br> Authored by: Pedro López-Gómez; Edward Smith; Pedro Bota; Alfonso Cornejo; Marina Urra; Javier Buezo; Jose F. Moran
DOI: 10.6084/m9.figshare.19761649
title: PCA R code

description: R code template utilised for the PCA analysis. It has no anotations. Article: Tryptophan Levels as a Marker of Auxins and Nitric Oxide signaling Authored by: Pedro López-Gómez; Edward Smith; Pedro Bota; Alfonso Cornejo; Marina Urra; Javier Buezo; Jose F. Moran
DOI: 10.6084/m9.figshare.19761496.v2
title: Engineering optimization

description: Engineering optimizationt
DOI: 10.6084/m9.figshare.14717061
title: 500 metagenome-assembled microbial genomes from 30 subtropical estuaries in South China

description: <strong>500 metagenome-assembled microbial genomes from 30 subtropical estuaries in South China</strong>
DOI: 10.6084/m9.figshare.14717061.v3
title: 500 dereplicated_genomes

description: <b>500 metagenome-assembled microbial genomes from 30 subtropical estuaries in South China</b>
DOI: 10.14469/hpc/10468
title: MEPHPY01 B3LYP+GD3BJ. Def2-SVPP, saddle=1, DCM, G = -1984.442004 IRC

description: Gaussian 16 (C01) calculation
DOI: 10.6084/m9.figshare.19761727.v1
title: Coye et al., 2022 - The evolution of vocal communication: Inertia and divergence in two closely related primates

description: This excel document provides the raw data and final tables used to produce the plots of the article (secondary data taken from Candiotti et al., 2012 and Coye et al., 2018)
DOI: 10.6084/m9.figshare.19761727
title: Coye et al., 2022 - The evolution of vocal communication: Inertia and divergence in two closely related primates

description: This excel document provides the raw data and final tables used to produce the plots of the article (secondary data taken from Candiotti et al., 2012 and Coye et al., 2018)
DOI: 10.5519/qd.8by2bj73
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11222 records)
DOI: 10.5281/zenodo.6544503
title: Case Study - Performance Changes of Apache Tomcat at Code Level

description: This dataset provides the data of the case study on Apache Tomcat that was conducted as part of the bachelor thesis "Extending Peass to Detect Performance Changes of Apache Tomcat". The data was generated by Peass and the Peass-Ant plugin. <strong>Contents</strong> The dataset is divided into case_study_1v-100v.tar.xz and case_study_100v-200v.tar.xz. Both parts contain the following data: select/ - Results of regression test selection, especially: results/traceTestSelection_tomcat.json - Tests selected based on static code analysis and trace analysis 3 x measure_p*_100vm_400iter/ - Results of performance measurements, especially: clean/ - Mean of measurements per VM results/changes.json - Tests containing performance changes, computed with t-test rca_p3_100vm_400iter/ - Results of root cause analysis, especially: rca/tree/ - Measurements results per called method results/*/*.html - Visualization of root cause analysis Additionally, f1_score.tar.xz is included in this dataset, It contains heatmaps visualizing the F<sub>1</sub>-score that were used to compare different measurement configurations. <strong>Extraction of Data</strong> Move all .tar.xz files to an empty directory and execute for each file: <pre><code class="language-bash">tar -Jxf &lt;file&gt;</code></pre>
DOI: 10.5281/zenodo.6500483
title: Case Study - Performance Changes of Apache Tomcat at Code Level

description: This dataset provides the data of the case study on Apache Tomcat that was conducted as part of the bachelor thesis "Extending Peass to Detect Performance Changes of Apache Tomcat". The data was generated by Peass and the Peass-Ant plugin. <strong>Contents</strong> The dataset is divided into case_study_1v-100v.tar.xz and case_study_100v-200v.tar.xz. Both parts contain the following data: select/ - Results of regression test selection, especially: results/traceTestSelection_tomcat.json - Tests selected based on static code analysis and trace analysis 3 x measure_p*_100vm_400iter/ - Results of performance measurements, especially: clean/ - Mean of measurements per VM results/changes.json - Tests containing performance changes, computed with t-test rca_p3_100vm_400iter/ - Results of root cause analysis, especially: rca/tree/ - Measurements results per called method results/*/*.html - Visualization of root cause analysis Additionally, f1_score.tar.xz is included in this dataset, It contains heatmaps visualizing the F<sub>1</sub>-score that were used to compare different measurement configurations. <strong>Extraction of Data</strong> Move all .tar.xz files to an empty directory and execute for each file: <pre><code class="language-bash">tar -Jxf &lt;file&gt;</code></pre>
DOI: 10.5517/ccdc.csd.cc20wdmy
title: CCDC 1873380: Experimental Crystal Structure Determination

description: Related Article: Krishnaja Duvvuri,  Kendra R. Dewese,  Mahesh M. Parsutkar,  Stanley M. Jing,  Milauni M. Mehta,  Judith C. Gallucci,  T. V. RajanBabu|2019|J.Am.Chem.Soc.|141|7365|doi:10.1021/jacs.8b13812
DOI: 10.5517/ccdc.csd.cc2197g2
title: CCDC 1885713: Experimental Crystal Structure Determination

description: Related Article: Krishnaja Duvvuri,  Kendra R. Dewese,  Mahesh M. Parsutkar,  Stanley M. Jing,  Milauni M. Mehta,  Judith C. Gallucci,  T. V. RajanBabu|2019|J.Am.Chem.Soc.|141|7365|doi:10.1021/jacs.8b13812
DOI: 10.5517/ccdc.csd.cc25nxpg
title: CCDC 2016106: Experimental Crystal Structure Determination

description: Related Article: Mahesh M. Parsutkar, T. V. RajanBabu|2021|J.Am.Chem.Soc.|143|12825|doi:10.1021/jacs.1c06245
DOI: 10.6084/m9.figshare.19761748
title: Coye et al., 2022 - The evolution of vocal communication: inertia and divergence in two closely related primates

description: This file provides the details of classification results and averaged consensus from the 15 ANN used.
DOI: 10.6084/m9.figshare.19761748.v1
title: Coye et al., 2022 - The evolution of vocal communication: inertia and divergence in two closely related primates

description: This file provides the details of classification results and averaged consensus from the 15 ANN used.
DOI: 10.15129/36db34ee-dcf9-494e-8953-fbcaae626c08
title: Code and data for: 'Subseasonal-to-Seasonal forecasting for wind turbine maintenance scheduling'

description: Code and data to produce site-specific forecasts of weekly mean wind speed, weekly standard deviation of hourly wind speed and a weather window 'number of useful hours' metric. A cost-loss model for crane hire is developed to evaluate the costs of decisions based on the forecasts. Forms the basis of the work for chapter 5 of PhD thesis 'Predictive analytics for wind power forecasting'. Access to data restricted due to commercial constraints.
DOI: 10.5281/zenodo.6545307
title: Russo-Ukrainian War Twitter dataset

description: Data collected from Twitter since 2022-03-02
DOI: 10.34740/kaggle/ds/2003682
title: River Flow-RF1
DOI: 10.34740/kaggle/ds/2172526
title: River Flow-RF2
DOI: 10.34740/kaggle/dsv/3626630
title: AutoXGB
DOI: 10.5281/zenodo.4548238
title: Source concepts for language data

description: An Excel spreadsheet containing the data for the paper "Mouths, tongues, and ears: Source concepts for 'language' across Africa".
DOI: 10.5281/zenodo.4548237
title: Source concepts for language data

description: An Excel spreadsheet containing the data for the paper "Mouths, tongues, and ears: Source concepts for 'language' across Africa".
DOI: 10.57745/ilfcp4/nxzc3w
title: FBNSV-data-scripts_2022-05-10.tar.bz2

description: :unav
DOI: 10.5281/zenodo.6538917
title: Global nutrient cycling by commercially targeted marine fish (Le Mézo et al., 2022, Biogeosciences)

description: Model outputs and code used for the study "Global nutrient cycling by commercially targeted marine fish" published in <em>Biogeosciences</em> (Le Mézo et al., 2022). composite4b_cycling_MCV3_PotH_LME_2010_R2_2010_fNPP7_ks24_p50_c7_newFNPP_Online_nruns_31 = model outputs with <strong>composite.maps</strong> contains the 2D fields <strong>y200</strong> refers to fields at the pristine state and <strong>yglo</strong> to fields at the global peak catch. <strong>dfish</strong> is the fish biomass in wet weight per gram (size class) <strong>resp5</strong> is the cycling rate that was used in the paper (defined in the Methods section) Main_script.mlx = main code used to compute the nutrient content and cycling of fish and the comparisons with other fields size_bins_width.m = code used to compute the model size bin width data_annual.mat = NO3, PO4, NPP, C export fields composite_MCV3_PotH_LME_2010_R2_2010_fNPP7_ks24_p50_c7_newFNPP_Online_nruns_31.mat is the model outputs with cyc.composite.maps.yglo.mean.harvest being the catch field at global peak catch solublefraction_Mahowald2009_360x180.nc is the Fe deposition field Brahneyetal2015_nitrogenandphosphorus2x2annualdep_360x180.nc is the N deposition field mask_LME.mat is the mask of LME areas ocean_topaz_tracers.timmean.BOATS_grid_fed.nc is the modeled dissolved Fe concentrations in seawater by the TOPAZ model zeu_lee_modis_aqua_average_2002-2019.nc is the euphotic depth field used to compute the nutrient concentrations woa05_nitrate_month.nc is the NO3 field used to make the spatial interpolations of the Fe:C stoichiometric ratios. mass_50sizes_boats.mat is the mass of each size class of the BOATS model Tables S2 and S3.xlsx litterature compilation of values for N and P in fish and zooplankton Galbraith et al (2019) SI.pdf is the supplement to Galbraith et al. (2019) in which the data compilation for the Fe content of fish, zooplankton and phytoplankton can be found.
DOI: 10.5281/zenodo.6538916
title: Global nutrient cycling by commercially targeted marine fish (Le Mézo et al., 2022, Biogeosciences)

description: Model outputs and code used for the study "Global nutrient cycling by commercially targeted marine fish" published in <em>Biogeosciences</em> (Le Mézo et al., 2022). composite4b_cycling_MCV3_PotH_LME_2010_R2_2010_fNPP7_ks24_p50_c7_newFNPP_Online_nruns_31 = model outputs with <strong>composite.maps</strong> contains the 2D fields <strong>y200</strong> refers to fields at the pristine state and <strong>yglo</strong> to fields at the global peak catch. <strong>dfish</strong> is the fish biomass in wet weight per gram (size class) <strong>resp5</strong> is the cycling rate that was used in the paper (defined in the Methods section) Main_script.mlx = main code used to compute the nutrient content and cycling of fish and the comparisons with other fields size_bins_width.m = code used to compute the model size bin width data_annual.mat = NO3, PO4, NPP, C export fields composite_MCV3_PotH_LME_2010_R2_2010_fNPP7_ks24_p50_c7_newFNPP_Online_nruns_31.mat is the model outputs with cyc.composite.maps.yglo.mean.harvest being the catch field at global peak catch solublefraction_Mahowald2009_360x180.nc is the Fe deposition field Brahneyetal2015_nitrogenandphosphorus2x2annualdep_360x180.nc is the N deposition field mask_LME.mat is the mask of LME areas ocean_topaz_tracers.timmean.BOATS_grid_fed.nc is the modeled dissolved Fe concentrations in seawater by the TOPAZ model zeu_lee_modis_aqua_average_2002-2019.nc is the euphotic depth field used to compute the nutrient concentrations woa05_nitrate_month.nc is the NO3 field used to make the spatial interpolations of the Fe:C stoichiometric ratios. mass_50sizes_boats.mat is the mass of each size class of the BOATS model Tables S2 and S3.xlsx litterature compilation of values for N and P in fish and zooplankton Galbraith et al (2019) SI.pdf is the supplement to Galbraith et al. (2019) in which the data compilation for the Fe content of fish, zooplankton and phytoplankton can be found.