cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7773562
title: Contamination in TESS light curves: The case of the Fast Yellow Pulsating Supergiants

description: MESA 22.11.1 inlist files used to create Fig. 1 of the paper "Contamination in TESS light curves: The case of the Fast Yellow Pulsating Supergiants".
DOI: 10.5281/zenodo.7773563
title: Contamination in TESS light curves: The case of the Fast Yellow Pulsating Supergiants

description: MESA 22.11.1 inlist files used to create Fig. 1 of the paper "Contamination in TESS light curves: The case of the Fast Yellow Pulsating Supergiants".
DOI: 10.5281/zenodo.8283053
title: data for Antarctic warming with f09_gx1v6

description: Numerical experiments are carried out with a fully coupled global climate model (Community Earth System Model version 1.2; CESM1.2). The model grid is f09_gx1v6. We reproduced two experiments with higher resolutions to study the warming mechanisms in Antarctica. They are control run (CTRL; CO2 concentration remains 285 ppm), and albedo perturbation run (0.1A; sea-ice albedo is set to 0.1 of its original value and no change in CO2). They all start from a climate equilibrium state (B1850) and integrate over 400 model years. We focus on the equilibrium responses using the monthly averaged fields over the last 100 years of integration, unless otherwise stated.
DOI: 10.5281/zenodo.8283052
title: data for Antarctic warming with f09_gx1v6

description: Numerical experiments are carried out with a fully coupled global climate model (Community Earth System Model version 1.2; CESM1.2). The model grid is f09_gx1v6. We reproduced two experiments with higher resolutions to study the warming mechanisms in Antarctica. They are control run (CTRL; CO2 concentration remains 285 ppm), and albedo perturbation run (0.1A; sea-ice albedo is set to 0.1 of its original value and no change in CO2). They all start from a climate equilibrium state (B1850) and integrate over 400 model years. We focus on the equilibrium responses using the monthly averaged fields over the last 100 years of integration, unless otherwise stated.
DOI: 10.5281/zenodo.7737358
title: MESA inlists for 'Revisiting the Red Giant Branch Hosts KOI-3886 and $\iota$ Draconis. Detailed Asteroseismic Modeling and Consolidated Stellar Parameters' by Campante et al.

description: MESA inlists used in preparation of the paper 'Revisiting the Red Giant Branch Hosts KOI-3886 and $\iota$ Draconis. Detailed Asteroseismic Modeling and Consolidated Stellar Parameters' by Campante et al. Two folders are provided in the .zip file: TL_Pipeline — inlists (MESA release version 12115) used to build the grid of stellar models used in Sect. 4.1 of the paper. JO_Pipeline — inlists (MESA release version 12778) used to build both grids of stellar models used in Sect. 4.2 of the paper.
DOI: 10.5281/zenodo.7737359
title: MESA inlists for 'Revisiting the Red Giant Branch Hosts KOI-3886 and $\iota$ Draconis. Detailed Asteroseismic Modeling and Consolidated Stellar Parameters' by Campante et al.

description: MESA inlists used in preparation of the paper 'Revisiting the Red Giant Branch Hosts KOI-3886 and $\iota$ Draconis. Detailed Asteroseismic Modeling and Consolidated Stellar Parameters' by Campante et al. Two folders are provided in the .zip file: TL_Pipeline — inlists (MESA release version 12115) used to build the grid of stellar models used in Sect. 4.1 of the paper. JO_Pipeline — inlists (MESA release version 12778) used to build both grids of stellar models used in Sect. 4.2 of the paper.
DOI: 10.5281/zenodo.7735067
title: Supplemental Materials for "Convective boundary mixing in main-sequence stars: theory and empirical constraints"

description: MESA inlists and data products used for generating the figures of the review paper: "Convective boundary mixing in main-sequence stars: theory and empirical constraints".
DOI: 10.5281/zenodo.7735066
title: Supplemental Materials for "Convective boundary mixing in main-sequence stars: theory and empirical constraints"

description: MESA inlists and data products used for generating the figures of the review paper: "Convective boundary mixing in main-sequence stars: theory and empirical constraints".
DOI: 10.5281/zenodo.7639833
title: Hyytiälä SMEAR II forest year 2020 thinning tree and carbon inventory data

description: This dataset contains description of thinning, and forest and carbon stock inventory results of the forest stand surrounding SMEAR II research station located in Hyytiälä, Finland. The dataset consists of following files: 1. Description of thinning and inventory methods (Hyytiala site description.pdf) 2. Forest characteristics before and after the thinning, by measurement plot (Forest characteristics.xlsx) 3. Carbon stocks before and after the thinning, as well as carbon stocks in commercial removal, by measurement plot (Carbon stocks.xlsx) 4. Equations used for procuding estimates presented in products 2&3 (Equations.xlsx) 5. Readme-file explaining details regarding variants in products 2&3 (Readme.xlsx) 6. Plot map showing the locations of measurement plots (Plot map.xlsx) 7. Tree size distribution before and after the thinning (Tree size distribution.xlsx) 8. Cleaned tree-wise inventory data (Plot measurement data 2020.xlsx) from 2019 understorey measurement results 2020 measurement results Plot 1-24 detailed inventory measurement results
DOI: 10.5281/zenodo.8108834
title: Hyytiälä SMEAR II forest year 2020 thinning tree and carbon inventory data

description: This dataset contains description of thinning, and forest and carbon stock inventory results of the forest stand surrounding SMEAR II research station located in Hyytiälä, Finland. The dataset consists of following files: 1. Description of thinning and inventory methods (Hyytiala site description.pdf) 2. Forest characteristics before and after the thinning, by measurement plot (Forest characteristics.xlsx) 3. Carbon stocks before and after the thinning, as well as carbon stocks in commercial removal, by measurement plot (Carbon stocks.xlsx) 4. Equations used for procuding estimates presented in products 2&3 (Equations.xlsx) 5. Readme-file explaining details regarding variants in products 2&3 (Readme.xlsx) 6. Plot map showing the locations of measurement plots (Plot map.xlsx) 7. Tree size distribution before and after the thinning (Tree size distribution.xlsx) 8. Cleaned tree-wise inventory data (Plot measurement data 2020.xlsx) from 2019 understorey measurement results 2020 measurement results Plot 1-24 detailed inventory measurement results
DOI: 10.5281/zenodo.7639832
title: Hyytiälä SMEAR II forest year 2020 thinning tree and carbon inventory data

description: This dataset contains description of thinning, and forest and carbon stock inventory results of the forest stand surrounding SMEAR II research station located in Hyytiälä, Finland. The dataset consists of following files: 1. Description of thinning and inventory methods (Hyytiala site description.pdf) 2. Forest characteristics before and after the thinning, by measurement plot (Forest characteristics.xlsx) 3. Carbon stocks before and after the thinning, as well as carbon stocks in commercial removal, by measurement plot (Carbon stocks.xlsx) 4. Equations used for procuding estimates presented in products 2&3 (Equations.xlsx) 5. Readme-file explaining details regarding variants in products 2&3 (Readme.xlsx) 6. Plot map showing the locations of measurement plots (Plot map.xlsx) 7. Tree size distribution before and after the thinning (Tree size distribution.xlsx) 8. Cleaned tree-wise inventory data (Plot measurement data 2020.xlsx) from 2019 understorey measurement results 2020 measurement results Plot 1-24 detailed inventory measurement results
DOI: 10.5281/zenodo.8138946
title: Hyytiälä SMEAR II forest year 2020 thinning tree and carbon inventory data

description: This dataset contains description of thinning, and forest and carbon stock inventory results of the forest stand surrounding SMEAR II research station located in Hyytiälä, Finland. The dataset consists of following files: 1. Description of thinning and inventory methods (Hyytiala site description.pdf) 2. Forest characteristics before and after the thinning, by measurement plot (Forest characteristics.xlsx) 3. Carbon stocks before and after the thinning, as well as carbon stocks in commercial removal, by measurement plot (Carbon stocks.xlsx) 4. Equations used for procuding estimates presented in products 2&3 (Equations.xlsx) 5. Readme-file explaining details regarding variants in products 2&3 (Readme.xlsx) 6. Plot map showing the locations of measurement plots (Plot map.xlsx) 7. Tree size distribution before and after the thinning (Tree size distribution.xlsx) 8. Cleaned tree-wise inventory data (Plot measurement data 2020.xlsx) from 2019 understorey measurement results 2020 measurement results Plot 1-24 detailed inventory measurement results
DOI: 10.5281/zenodo.8283056
title: alipiopsitta_xanthops_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8283057
title: Hyytiälä SMEAR II forest year 2020 thinning tree and carbon inventory data

description: This dataset contains description of thinning, and forest and carbon stock inventory results of the forest stand surrounding SMEAR II research station located in Hyytiälä, Finland. The dataset consists of following files: 1. Description of thinning and inventory methods (Hyytiala site description.pdf) 2. Forest characteristics before and after the thinning, by measurement plot (Forest characteristics.xlsx) 3. Carbon stocks before and after the thinning, as well as carbon stocks in commercial removal, by measurement plot (Carbon stocks.xlsx) 4. Equations used for procuding estimates presented in products 2&3 (Equations.xlsx) 5. Readme-file explaining details regarding variants in products 2&3 (Readme.xlsx) 6. Plot map showing the locations of measurement plots (Plot map.xlsx) 7. Tree size distribution before and after the thinning (Tree size distribution.xlsx) 8. Cleaned tree-wise inventory data (Plot measurement data 2020.xlsx) from 2019 understorey measurement results 2020 measurement results Plot 1-24 detailed inventory measurement results
DOI: 10.5281/zenodo.8283055
title: alipiopsitta_xanthops_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8282995
title: Radionuclide, particle size and elemental geochemistry analysis results of the Poechos sediment core, northern Peru

description: This database presents the particle size, elemental geochemistry and radionuclide analyses carried out on the 19CO3 core (IGSN number: 10.58052/IEFOU0009) collected in June 2019 in the Poechos reservoir (Peru). These results are part of the publication <em>" El Niño-Southern Oscillation (ENSO)-driven hypersedimentation in the Poechos Reservoir, northern Peru "</em> available via the following link: http://dx.doi.org/10.5194/egusphere-2022-1233 Corresponding authors: anthony.foucher@lsce.ipsl.fr Particle size analysis was performed using a laser grain sizer Malvern Mastersizer 3000 allowing to measure the grain size distribution between 10 nm and 3.5 mm. Particle size was measured on the sandy layers identified along the core (n=19) Grain size parameters such as d10, d50, d90 and raw are present on the file: <em>Particle_size_POECHOS-reservoir_Foucher-et-al</em> Sediment core sections were analyzed with an Avaatech X-Ray Fluorescence core scanner (XRF) available at the Laboratoire des Sciences du Climat et de l’Environnement (Gif-sur-Yvette, France) with a 0.5 cm resolution. These data are available on the file: <em>XRF_core_scanner_POECHOS-reservoir_Foucher-et-al</em> Gamma spectrometry measurements were obtained using HPGe detectors (Canberra/Ortec) available at the Laboratoire des Sciences du Climat et de l’Environnement. Short-lived radionuclides (e.g., caesium-137 (137Cs) and excess of lead-210 (210Pbex)) were measured in 12 samples of dry sediment (≈10g) collected along the sedimentary sequence (approximatively every 40 cm). The data are available on the file: <em>Radionuclides_POECHOS-reservoir_Foucher-et-al</em>
DOI: 10.5281/zenodo.8282994
title: Radionuclide, particle size and elemental geochemistry analysis results of the Poechos sediment core, northern Peru

description: This database presents the particle size, elemental geochemistry and radionuclide analyses carried out on the 19CO3 core (IGSN number: 10.58052/IEFOU0009) collected in June 2019 in the Poechos reservoir (Peru). These results are part of the publication <em>" El Niño-Southern Oscillation (ENSO)-driven hypersedimentation in the Poechos Reservoir, northern Peru "</em> available via the following link: http://dx.doi.org/10.5194/egusphere-2022-1233 Corresponding authors: anthony.foucher@lsce.ipsl.fr Particle size analysis was performed using a laser grain sizer Malvern Mastersizer 3000 allowing to measure the grain size distribution between 10 nm and 3.5 mm. Particle size was measured on the sandy layers identified along the core (n=19) Grain size parameters such as d10, d50, d90 and raw are present on the file: <em>Particle_size_POECHOS-reservoir_Foucher-et-al</em> Sediment core sections were analyzed with an Avaatech X-Ray Fluorescence core scanner (XRF) available at the Laboratoire des Sciences du Climat et de l’Environnement (Gif-sur-Yvette, France) with a 0.5 cm resolution. These data are available on the file: <em>XRF_core_scanner_POECHOS-reservoir_Foucher-et-al</em> Gamma spectrometry measurements were obtained using HPGe detectors (Canberra/Ortec) available at the Laboratoire des Sciences du Climat et de l’Environnement. Short-lived radionuclides (e.g., caesium-137 (137Cs) and excess of lead-210 (210Pbex)) were measured in 12 samples of dry sediment (≈10g) collected along the sedimentary sequence (approximatively every 40 cm). The data are available on the file: <em>Radionuclides_POECHOS-reservoir_Foucher-et-al</em>
DOI: 10.5281/zenodo.7705647
title: Inlist Files for "Near-Core Acoustic Glitches are Not Oscillatory: Consequences for Asteroseismic Probes of Convective Boundary Mixing"

description: MESA (r12778) and GYRE (version 6.0) inlist files used in the work described in "Near-Core Acoustic Glitches are Not Oscillatory: Consequences for Asteroseismic Probes of Convective Boundary Mixing". Three subdirectories are provided in the archive: 1) The directory called "inlists" contains different MESA inlist files for different evolutionary period (pms=pre main sequence, ms=main sequence, and rgb=red giant branch) of the stellar model. The file named "inlist_0all" is applied to all evolutionary periods. The different inlist files for the different evolutionary states are called by putting their names in the "inlist" file, for example the include file named "inlist" evolves a MESA model from the pre main sequence until ZAMS (using the stop_near_zams = .true. option in the "inlist_1pms" file). An example gyre (version 6.0) inlist is also included in the "inlists" subdirectory. 2) Custom stopping conditions (used for stopping a model before the red giant branch) as well as a custom diffusion cutoff (see Viani et al. 2018, ApJ, 858, 28) are included in the run_star_extras.f file in the "src" subdirectory. 3) The subdirectory named "near_core_glitch_models_with_diffusion" include the MESA modelling results used in the paper (in directories labeled by their stellar mass) and GYRE-calculated frequencies (in the GYRE_OUTPUTS subdirectories).
description: Feel free to email the corresponding author at christopher.lindsay@yale.edu. CJL acknowledges support from a Gruber Science Fellowship. JO acknowledges support from NASA through the NASA Hubble Fellowship grant HST-HF2-51517.001 awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. SB acknowledges NSF grant AST-2205026.
DOI: 10.5281/zenodo.7705648
title: Inlist Files for "Near-Core Acoustic Glitches are Not Oscillatory: Consequences for Asteroseismic Probes of Convective Boundary Mixing"

description: MESA (r12778) and GYRE (version 6.0) inlist files used in the work described in "Near-Core Acoustic Glitches are Not Oscillatory: Consequences for Asteroseismic Probes of Convective Boundary Mixing". Three subdirectories are provided in the archive: 1) The directory called "inlists" contains different MESA inlist files for different evolutionary period (pms=pre main sequence, ms=main sequence, and rgb=red giant branch) of the stellar model. The file named "inlist_0all" is applied to all evolutionary periods. The different inlist files for the different evolutionary states are called by putting their names in the "inlist" file, for example the include file named "inlist" evolves a MESA model from the pre main sequence until ZAMS (using the stop_near_zams = .true. option in the "inlist_1pms" file). An example gyre (version 6.0) inlist is also included in the "inlists" subdirectory. 2) Custom stopping conditions (used for stopping a model before the red giant branch) as well as a custom diffusion cutoff (see Viani et al. 2018, ApJ, 858, 28) are included in the run_star_extras.f file in the "src" subdirectory. 3) The subdirectory named "near_core_glitch_models_with_diffusion" include the MESA modelling results used in the paper (in directories labeled by their stellar mass) and GYRE-calculated frequencies (in the GYRE_OUTPUTS subdirectories).
description: Feel free to email the corresponding author at christopher.lindsay@yale.edu. CJL acknowledges support from a Gruber Science Fellowship. JO acknowledges support from NASA through the NASA Hubble Fellowship grant HST-HF2-51517.001 awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555. SB acknowledges NSF grant AST-2205026.
DOI: 10.5281/zenodo.7683203
title: Heat transport and convective velocities in compositionally-driven convection in neutron star and white dwarf interiors

description: MESA (version r22.11.1) inlists and source code used for the paper "Heat transport and convective velocities in compositionally-driven convection in neutron star and white dwarf interiors". cool_wd.zip contains the MESA files to reproduce the results discussed in section 4 of the paper. A Python-based Dedalus v3 script to reproduce the 3D numerical simulations presented in section 3 of the paper is included as Compositionally_driven_convection_3D_shell.py.
DOI: 10.5281/zenodo.7683202
title: Heat transport and convective velocities in compositionally-driven convection in neutron star and white dwarf interiors

description: MESA (version r22.11.1) inlists and source code used for the paper "Heat transport and convective velocities in compositionally-driven convection in neutron star and white dwarf interiors". cool_wd.zip contains the MESA files to reproduce the results discussed in section 4 of the paper. A Python-based Dedalus v3 script to reproduce the 3D numerical simulations presented in section 3 of the paper is included as Compositionally_driven_convection_3D_shell.py.
DOI: 10.5281/zenodo.8283070
title: amazona_versicolor_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8283069
title: amazona_versicolor_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7669043
title: Detection and seismic study of gravity and Rossby mode pulsations in four contact binaries

description: MESA module and inlist files used in the paper “Detection and seismic study of gravity and Rossby mode pulsations in four contact binaries“
DOI: 10.5281/zenodo.7669044
title: Detection and seismic study of gravity and Rossby mode pulsations in four contact binaries

description: MESA module and inlist files used in the paper “Detection and seismic study of gravity and Rossby mode pulsations in four contact binaries“
DOI: 10.18454/jbg.2023.21.3.1
title: Влияние яДНК и мтДНК в генотипе потомства при стрессе, инбридинге и скрещивании на биофизический потенциал зиготы

description: Journal of Bioinformatics and Genomics, Выпуск 3 (21) 2023
DOI: 10.18454/jbg.2023.21.4.1
title: The most specific primers

description: Journal of Bioinformatics and Genomics, Выпуск 3 (21) 2023
DOI: 10.5281/zenodo.7529669
title: Implications of large binding energies of massive stripped core collapse supernova progenitors on the explosion mechanism

description: Inlist files (r15140) used for the creation of the core-collapse progenitor models in the paper "The implications of large binding energies of massive, stripped, core-collapse supernova progenitors on the explosion mechanism". Based on the ‘20M pre ms to core collapse’ example from MESA r22.05, adapted for use in r15140, and include several variations as detailed in the paper appendix A. See README.txt for running details and example script. Also included are the full simulation list and the profiles of the 52 simulated cases, including the pre-collapse profiles at the point of termination for the 27 models that reached collapse. Profiles are at central oxygen depletion (5% abundance at center), central silicon depletion (5% abundance at center) and collapse, as defined in the paper.
DOI: 10.5281/zenodo.7529670
title: Implications of large binding energies of massive stripped core collapse supernova progenitors on the explosion mechanism

description: Inlist files (r15140) used for the creation of the core-collapse progenitor models in the paper "The implications of large binding energies of massive, stripped, core-collapse supernova progenitors on the explosion mechanism". Based on the ‘20M pre ms to core collapse’ example from MESA r22.05, adapted for use in r15140, and include several variations as detailed in the paper appendix A. See README.txt for running details and example script. Also included are the full simulation list and the profiles of the 52 simulated cases, including the pre-collapse profiles at the point of termination for the 27 models that reached collapse. Profiles are at central oxygen depletion (5% abundance at center), central silicon depletion (5% abundance at center) and collapse, as defined in the paper.
DOI: 10.6084/m9.figshare.24033126
title: Scoping Review data extraction

description: SR loss limb use data extraction
DOI: 10.6084/m9.figshare.24033126.v1
title: Scoping Review data extraction

description: SR loss limb use data extraction
DOI: 10.5281/zenodo.8278594
title: Prediction of Spheroid Cell Death using Fluorescence Staining and Convolutional Neural Networks

description: This repository contains training, validation, and testing of fluorescence image data sets with their label for spheroid cell death classification. These data are intended to be used in the paper <strong>"Prediction of Spheroid Cell Death using Fluorescence Staining and Convolutional Neural Networks" currently submitted </strong>
DOI: 10.5281/zenodo.8278593
title: Prediction of Spheroid Cell Death using Fluorescence Staining and Convolutional Neural Networks

description: This repository contains training, validation, and testing of fluorescence image data sets with their label for spheroid cell death classification. These data are intended to be used in the paper <strong>"Prediction of Spheroid Cell Death using Fluorescence Staining and Convolutional Neural Networks" currently submitted </strong>
DOI: 10.5281/zenodo.8283086
title: forpus_coelesti_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8283085
title: forpus_coelesti_zanfona_1.fasta.gz

description: .
DOI: 10.6084/m9.figshare.24033138
title: Summary Narrative for creative development

description: Main points narrative for creative dissemination development
DOI: 10.6084/m9.figshare.24033138.v1
title: Summary Narrative for creative development

description: Main points narrative for creative dissemination development
DOI: 10.6084/m9.figshare.24033165
title: Sample Biographical Overview.docx

description: biographical overview
DOI: 10.6084/m9.figshare.24033165.v1
title: Sample Biographical Overview.docx

description: biographical overview
DOI: 10.6084/m9.figshare.24033180
title: Diagrams of biography.pdf

description: Diagrams of biography
DOI: 10.6084/m9.figshare.24033180.v1
title: Diagrams of biography.pdf

description: Diagrams of biography