cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9169775
title: Priming data

description: Column names are as follows:<br>1. Trial (the trial number)2. primetype (1= Face 2, = Animal )3. prime valence (1= Negative ,2= Positive)4. Target emotion.5. Target morph strength (these variables are later transformed into the variable MORPH (see below).6. The SOA between prime and morph in ms.7. Model (the number of the target face)8. The response to the target stimulus (1 = angry , 2 = happy )9. The prime discrimination response.10. The PAS response.11. The morph level (1= 0% happy, 4 = 100% happy).
DOI: 10.6084/m9.figshare.9169766
title: Beyond forests in the Amazon: biogeography and floristic relationships of the Amazonian savannas - supplementary data

description: These are the supplementary files to the study "Beyond forests in the Amazon: biogeography and floristic relationships of the Amazonian savannas", published in the Botanical Journal of the Linnean Society (https://doi.org/10.1093/botlinnean/boaa025). We provide here the following files: <br><br>S1 - List of exsiccatae collected during the project in ODT and PDF formats.<br> S2 - Presence-absence matrix showing the occurrence of each species on each site used to perform multivariate analyses in R. <br>S3 - Database of species-site occurrences.<br> S4 - Venn diagram results data in XLSX spreadsheet format showing the overlap in species composition between habitats. To see the data in a visual format consult figures in our article.<br> S5 - R script to analyse the Presence-absence matrix with multivariate UPGMA and NMDS analyses.
DOI: 10.6084/m9.figshare.9169775.v1
title: Priming data

description: Column names are as follows:<br>1. Trial (the trial number)2. primetype (1= Face 2, = Animal )3. prime valence (1= Negative ,2= Positive)4. Target emotion.5. Target morph strength (these variables are later transformed into the variable MORPH (see below).6. The SOA between prime and morph in ms.7. Model (the number of the target face)8. The response to the target stimulus (1 = angry , 2 = happy )9. The prime discrimination response.10. The PAS response.11. The morph level (1= 0% happy, 4 = 100% happy).
DOI: 10.6084/m9.figshare.9169766.v1
title: Beyond forests in the Amazon: biogeography and floristic relationships of the Amazonian savannas - supplementary data

description: These are the supplementary files to the study "Beyond forests in the Amazon: biogeography and floristic relationships of the Amazonian savannas", published in the Botanical Journal of the Linnean Society (https://doi.org/10.1093/botlinnean/boaa025). We provide here the following files: <br><br>S1 - List of exsiccatae collected during the project in ODT and PDF formats.<br> S2 - Presence-absence matrix showing the occurrence of each species on each site used to perform multivariate analyses in R. <br>S3 - Database of species-site occurrences.<br> S4 - Venn diagram results data in XLSX spreadsheet format showing the overlap in species composition between habitats. To see the data in a visual format consult figures in our article.<br> S5 - R script to analyse the Presence-absence matrix with multivariate UPGMA and NMDS analyses.
DOI: 10.21942/uva.9169232
title: Supplementary Electronic File Online S6.4

description: <b>Supplementary Dataset </b><b>4</b><b>: </b>Presence-absence of marker genes for central metabolic pathways and environmentally relevant element transformations in a selection of MAGs. MAGs were selected based on the presence of markers for dissimilatory sulfur cycling. KEGG number assignment, CheckM-completeness, and -contamination, as well as species delineation (based on average nucleotide identity, see Methods) are given. X=gene absent, V=gene present.
DOI: 10.21942/uva.9168761
title: Supplementary Electronic File Online S6.2

description: <b>Supplementary Dataset </b><b>2</b><b>: </b>Phylogenetic tree of all bacterial MAGs obtained in this study and in (Vavourakis et al. 2018) based on 16 ribosomal proteins. References included in the tree were obtained from (Hug et al. 2016).
DOI: 10.21942/uva.9169112
title: Supplementary Electronic File Online S6.3

description: <b>Supplementary Dataset </b><b>3</b><b>: </b>Species representative MAGs that encode for S-cycling marker genes. Basis for Figure S6.3. KEGG number assignment, CheckM-completeness, and -contamination are given. X=gene absent, V=gene present.
DOI: 10.21942/uva.9169232.v1
title: Supplementary Electronic File Online S6.4

description: <b>Supplementary Dataset </b><b>4</b><b>: </b>Presence-absence of marker genes for central metabolic pathways and environmentally relevant element transformations in a selection of MAGs. MAGs were selected based on the presence of markers for dissimilatory sulfur cycling. KEGG number assignment, CheckM-completeness, and -contamination, as well as species delineation (based on average nucleotide identity, see Methods) are given. X=gene absent, V=gene present.
DOI: 10.21942/uva.9169112.v1
title: Supplementary Electronic File Online S6.3

description: <b>Supplementary Dataset </b><b>3</b><b>: </b>Species representative MAGs that encode for S-cycling marker genes. Basis for Figure S6.3. KEGG number assignment, CheckM-completeness, and -contamination are given. X=gene absent, V=gene present.
DOI: 10.21942/uva.9168761.v1
title: Supplementary Electronic File Online S6.2

description: <b>Supplementary Dataset </b><b>2</b><b>: </b>Phylogenetic tree of all bacterial MAGs obtained in this study and in (Vavourakis et al. 2018) based on 16 ribosomal proteins. References included in the tree were obtained from (Hug et al. 2016).
DOI: 10.6084/m9.figshare.9168680
title: Supplementary Material for: AGO Recommendations for the Diagnosis and Treatment of Patients with Locally Advanced and Metastatic Breast Cancer: Update 2019

description: Every year the Breast Committee of the <i>Arbeitsgemeinschaft Gynäkologische Onkologie (German Gynecological Oncology Group, AGO)</i>, a group of gynecological oncologists specialized in breast cancer and interdisciplinary members specialized in pathology, radiologic diagnostics, medical oncology, and radiation oncology, prepares and updates evidence-based recommendations for the diagnosis and treatment of patients with early and metastatic breast cancer. Every update is performed according to a documented rule-fixed algorithm, by thoroughly reviewing and scoring the recent publications for their scientific validity and clinical relevance. This current publication presents the 2019 update on the recommendations for metastatic breast cancer.
DOI: 10.21942/uva.9168296
title: Supplementary Electronic File Online S6.1

description: <b>Supplementary Dataset 1: </b>Metrics and Genbank accession numbers on the obtained metagenome-assembled genomes (MAGs). The total size of the MAG (Mb), the number of contains (# Contigs), the contig N50 (kb), maximum contig length (kb), estimated mean coverage, average G+C mol%, total number of 5S, 16S and 23S rRNAs, total number of tRNAs and estimated percentages of CheckM completeness (Compl), contamination (Cont) and strain heterogeneity (Str het) are given. The final given name used for the Genbank submission (NCBI organism name) was derived from the Genome Taxonomy Database (GTDP) classification according to (Parks et al. 2018) and where possible verified with the 16S rRNA gene classification according to the SILVA database (see column “Proposed name (GTDB)”). For the latter, BLAST results are reported: taxonomy of the best hit, identity with this best hit (%), e-value of the match, the length of the query (number of nucleotides) and the coverage with the hit (%).
DOI: 10.6084/m9.figshare.9168680.v1
title: Supplementary Material for: AGO Recommendations for the Diagnosis and Treatment of Patients with Locally Advanced and Metastatic Breast Cancer: Update 2019

description: Every year the Breast Committee of the <i>Arbeitsgemeinschaft Gynäkologische Onkologie (German Gynecological Oncology Group, AGO)</i>, a group of gynecological oncologists specialized in breast cancer and interdisciplinary members specialized in pathology, radiologic diagnostics, medical oncology, and radiation oncology, prepares and updates evidence-based recommendations for the diagnosis and treatment of patients with early and metastatic breast cancer. Every update is performed according to a documented rule-fixed algorithm, by thoroughly reviewing and scoring the recent publications for their scientific validity and clinical relevance. This current publication presents the 2019 update on the recommendations for metastatic breast cancer.
DOI: 10.6084/m9.figshare.9168092
title: Supplementary Material for: Real-Time Detection of Spatial Disorientation in Persons with Mild Cognitive Impairment and Dementia

description: <b><i>Background:</i></b> Detecting manifestations of spatial disorientation in real time is a key requirement for adaptive assistive navigation systems for people with dementia. <b><i>Objective:</i></b> To identify predictive patterns of spatial disorientation in cognitively impaired people during unconstrained locomotion behavior in an urban environment. <b><i>Methods:</i></b> Accelerometric data and GPS records were gathered during a wayfinding task along a route of about 1 km in 15 people with amnestic mild cognitive impairment or clinically probable Alzheimer’s disease dementia (13 completers). We calculated a set of 48 statistical features for each 10-s segment of the acceleration sensor signal to characterize the physical motion. We used different classifiers with the wrapper method and leave-one-out cross-validation for feature selection and for determining accuracy of disorientation detection. <b><i>Results:</i></b> Linear discriminant analysis using three features showed the best classification results, with a cross-validated ROC AUC of 0.75, detecting 65% of all scenes of spatial disorientation in real time. Consideration of an additional feature that informed about a person’s distance to the next traffic junction did not provide an additional information gain. <b><i>Conclusions:</i></b> Accelerometric data are able to capture the uniformity and activity of a person’s walking, which are identified as the most informative locomotion features of spatially disoriented behavior. This serves as an important basis for real-time navigation assistance. To improve the required accuracy of real-time disorientation prediction, as a next step we will analyze whether location-based behavior is able to inform about person-centered habitual factors of orientation.
DOI: 10.6084/m9.figshare.9168092.v1
title: Supplementary Material for: Real-Time Detection of Spatial Disorientation in Persons with Mild Cognitive Impairment and Dementia

description: <b><i>Background:</i></b> Detecting manifestations of spatial disorientation in real time is a key requirement for adaptive assistive navigation systems for people with dementia. <b><i>Objective:</i></b> To identify predictive patterns of spatial disorientation in cognitively impaired people during unconstrained locomotion behavior in an urban environment. <b><i>Methods:</i></b> Accelerometric data and GPS records were gathered during a wayfinding task along a route of about 1 km in 15 people with amnestic mild cognitive impairment or clinically probable Alzheimer’s disease dementia (13 completers). We calculated a set of 48 statistical features for each 10-s segment of the acceleration sensor signal to characterize the physical motion. We used different classifiers with the wrapper method and leave-one-out cross-validation for feature selection and for determining accuracy of disorientation detection. <b><i>Results:</i></b> Linear discriminant analysis using three features showed the best classification results, with a cross-validated ROC AUC of 0.75, detecting 65% of all scenes of spatial disorientation in real time. Consideration of an additional feature that informed about a person’s distance to the next traffic junction did not provide an additional information gain. <b><i>Conclusions:</i></b> Accelerometric data are able to capture the uniformity and activity of a person’s walking, which are identified as the most informative locomotion features of spatially disoriented behavior. This serves as an important basis for real-time navigation assistance. To improve the required accuracy of real-time disorientation prediction, as a next step we will analyze whether location-based behavior is able to inform about person-centered habitual factors of orientation.
DOI: 10.6084/m9.figshare.9168041
title: A methodology to downscale water demand data with application to the Andes (Ecuador, Peru, Bolivia, Chile)

description: The Andes are a hotspot for water scarcity and anthropogenic pressure on water resources. Here we present high resolution gridded maps (3 arcseconds) of anthropogenic surface water demand in the Andes, disaggregated in the major types of water use: domestic users, irrigated area and hydropower. The dataset has been built by homogenizing, integrating and interpolating direct data from various national hydrological and meteorological services offices and institutions in charge of water resources management using relevant proxy datasets such as the WorldPop population maps and the MapSPAM initiative for irrigated area. <br>
DOI: 10.6084/m9.figshare.9168041.v1
title: High-resolution maps of the main types of anthropogenic surface water demand for 4 Andean countries: Ecuador, Peru, Bolivia, and Chile.

description: The Andes are a hotspot for water scarcity and anthropogenic pressure on water resources. Here we present high resolution gridded maps (3 arcseconds) of anthropogenic surface water demand in the Andes, disaggregated in the major types of water use: domestic users, irrigated area and hydropower. The dataset has been built by homogenizing, integrating and interpolating direct data from various national hydrological and meteorological services offices and institutions in charge of water resources management using relevant proxy datasets such as the WorldPop population maps and the MapSPAM initiative for irrigated area. <br>
DOI: 10.6084/m9.figshare.9166649
title: STATIL Tilt Data

description: STATIL Tilt data during on-Deck measurements.<br>
DOI: 10.6084/m9.figshare.9166649.v1
title: STATIL Tilt Data

description: STATIL Tilt data during on-Deck measurements.<br>
DOI: 10.6084/m9.figshare.9166529
title: TEM TVac Calibration Data

description: Thermal vacuum test raw data for the HP3 mole (TEM-A) as well as the THS reference measurement data at high vacuum condition, 8mbar, and 50 mbar.<br>
DOI: 10.6084/m9.figshare.9166529.v1
title: TEM TVac Calibration Data

description: Thermal vacuum test raw data for the HP3 mole (TEM-A) as well as the THS reference measurement data at high vacuum condition, 8mbar, and 50 mbar.<br>
DOI: 10.6084/m9.figshare.9165746
title: Dataset used for "Link-centric analysis of variation by demographics in mobile phone communication patterns"

description: This dataset contains the files required to replicate the results in the paper "Link-centric analysis of variation by demographics in mobile phone communication patterns". Details are available in the README file.
DOI: 10.6084/m9.figshare.9165644
title: Ecosystem responses to increased organic carbon concentration: comparing results based on long-term monitoring and whole-lake experimentation

description: Recent increases in terrestrial dissolved organic carbon (DOC) concentrations in northern inland waters have many ecological consequences. We examined available data on carbon cycles and food webs of 2 boreal headwater lakes in southern Finland. Basic limnology and catchment characteristics of a pristine lake, Valkea-Kotinen (VK), were monitored over the past 25 years while the lake has undergone browning and DOC increased from ∼11 to 13 mg L<sup>−1</sup>. Pronounced changes in the early 2000s represent a regime shift in DOC concentration and color. Lake Alinen Mustajärvi (AM) was manipulated for 2 years by additions of labile DOC (cane sugar), raising the DOC concentration from ∼10 to 12 mg L<sup>−1</sup>, but not changing light conditions. The 2 different approaches both revealed increased concentrations and efflux of carbon dioxide (CO<sub>2</sub>) from the lakes and thus net heterotrophy and changes in the pelagic community structure following an increase in DOC concentration. Long-term monitoring of VK revealed a decline in phytoplankton primary production (PP) along with browning, which was reflected in retarded growth of young (1–2-year-old) perch. In the experimentally manipulated lake (AM), PP was not affected, and the growth of young perch was more variable. The results suggested the importance of a pathway from labile DOC via benthic invertebrates to perch. Although provided with this extra resource, the food chain based on DOC proved inefficient. Long-term monitoring and whole-lake experimentation are complementary approaches for revealing how freshwater ecosystems respond to climate and/or atmospheric deposition-induced changes, such as browning.
DOI: 10.6084/m9.figshare.9165644.v2
title: Ecosystem responses to increased organic carbon concentration: comparing results based on long-term monitoring and whole-lake experimentation

description: Recent increases in terrestrial dissolved organic carbon (DOC) concentrations in northern inland waters have many ecological consequences. We examined available data on carbon cycles and food webs of 2 boreal headwater lakes in southern Finland. Basic limnology and catchment characteristics of a pristine lake, Valkea-Kotinen (VK), were monitored over the past 25 years while the lake has undergone browning and DOC increased from ∼11 to 13 mg L<sup>−1</sup>. Pronounced changes in the early 2000s represent a regime shift in DOC concentration and color. Lake Alinen Mustajärvi (AM) was manipulated for 2 years by additions of labile DOC (cane sugar), raising the DOC concentration from ∼10 to 12 mg L<sup>−1</sup>, but not changing light conditions. The 2 different approaches both revealed increased concentrations and efflux of carbon dioxide (CO<sub>2</sub>) from the lakes and thus net heterotrophy and changes in the pelagic community structure following an increase in DOC concentration. Long-term monitoring of VK revealed a decline in phytoplankton primary production (PP) along with browning, which was reflected in retarded growth of young (1–2-year-old) perch. In the experimentally manipulated lake (AM), PP was not affected, and the growth of young perch was more variable. The results suggested the importance of a pathway from labile DOC via benthic invertebrates to perch. Although provided with this extra resource, the food chain based on DOC proved inefficient. Long-term monitoring and whole-lake experimentation are complementary approaches for revealing how freshwater ecosystems respond to climate and/or atmospheric deposition-induced changes, such as browning.
DOI: 10.6084/m9.figshare.9165644.v1
title: Ecosystem responses to increased organic carbon concentration: comparing results based on long-term monitoring and whole-lake experimentation

description: Recent increases in terrestrial dissolved organic carbon (DOC) concentrations in northern inland waters have many ecological consequences. We examined available data on carbon cycles and food webs of 2 boreal headwater lakes in southern Finland. Basic limnology and catchment characteristics of a pristine lake, Valkea-Kotinen (VK), were monitored over the past 25 years while the lake has undergone browning and DOC increased from ∼11 to 13 mg L<sup>−1</sup>. Pronounced changes in the early 2000s represent a regime shift in DOC concentration and color. Lake Alinen Mustajärvi (AM) was manipulated for 2 years by additions of labile DOC (cane sugar), raising the DOC concentration from ∼10 to 12 mg L<sup>−1</sup>, but not changing light conditions. The 2 different approaches both revealed increased concentrations and efflux of carbon dioxide (CO<sub>2</sub>) from the lakes and thus net heterotrophy and changes in the pelagic community structure following an increase in DOC concentration. Long-term monitoring of VK revealed a decline in phytoplankton primary production (PP) along with browning, which was reflected in retarded growth of young (1–2-year-old) perch. In the experimentally manipulated lake (AM), PP was not affected, and the growth of young perch was more variable. The results suggested the importance of a pathway from labile DOC via benthic invertebrates to perch. Although provided with this extra resource, the food chain based on DOC proved inefficient. Long-term monitoring and whole-lake experimentation are complementary approaches for revealing how freshwater ecosystems respond to climate and/or atmospheric deposition-induced changes, such as browning.
DOI: 10.6084/m9.figshare.9165443
title: Protein interactions of the Drug target Hypothetical protein from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Hypothetical protein according to STRING.
DOI: 10.6084/m9.figshare.9165443.v1
title: Protein interactions of the Drug target Hypothetical protein from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Hypothetical protein according to STRING.
DOI: 10.6084/m9.figshare.9165431
title: DEG results from Drug targets from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: BLAST results of drug targets from Essential Gene Database DEG.
DOI: 10.6084/m9.figshare.9165425
title: Unassigned Genes from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Genes detected by the orthofinder who still do not have their fully elucidated functions.
DOI: 10.6084/m9.figshare.9165428
title: Protein interactions of the Drug target Ribosome-binding factor A from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Ribosome-binding factor A according to STRING.
DOI: 10.6084/m9.figshare.9165431.v1
title: DEG results from Drug targets from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: BLAST results of drug targets from Essential Gene Database DEG.
DOI: 10.6084/m9.figshare.9165425.v1
title: Unassigned Genes from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Genes detected by the orthofinder who still do not have their fully elucidated functions.
DOI: 10.6084/m9.figshare.9165419
title: Proteins identified in only one strain of <i>M. pneumonia</i> from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The file contains the names of the single proteins of each line studied, representing the singletons.
DOI: 10.6084/m9.figshare.9165428.v1
title: Protein interactions of the Drug target Ribosome-binding factor A from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Ribosome-binding factor A according to STRING.
DOI: 10.6084/m9.figshare.9165419.v1
title: Proteins identified in only one strain of <i>M. pneumonia</i> from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The file contains the names of the single proteins of each line studied, representing the singletons.