cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/yr1z-a514
title: Mars and Moon models used for the reproducibility challenge of the Student Cluster Competition at the SC19 conference

description: The dataset contains two sets of planetary models used in the Reproducibility Challenge Student Cluster Competition at the SC19 conference. During this challenge the competitors reproduced parts of the SC18 paper: "Computing planetary interior normal modes with a highly parallel polynomial filtering eigensolver." by Shi, Jia, et al. (https://doi.org/10.1109/SC.2018.00074)One set contains two Moon models as used during the preparation and the other contains six Mars models as used at the actualcompetition. The dataset can be used in the normal mode application (https://github.com/js1019/NormalModes).
DOI: 10.6084/m9.figshare.12980843
title: R0225_20180606a_videos

description: Rat 0225, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12980954
title: Gene database of Archaeoglobus fulgidus DSM 8774

description: <i>Archaeoglobus fulgidus</i> is a thermophilic archaeon found in hyperthermal environments such as hot springs and oil fields. With a small genome encoding fewer number of genes compared to the typical bacterial species, <i>A. fulgidus</i> offers many fascinating vistas for inquiry such as in functional genomics, metabolism, and cellular physiology. This work sought to provide the genetic repertoire of <i>A. fulgidus</i> DSM8774 by parsing the annotated genome sequence of the archaeon downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should find use in a variety of molecular phylogeny research seeking to understand the evolutionary origins of this species and the evolutionary context of its metabolic machinery.
DOI: 10.6084/m9.figshare.12178845
title: Manual therapy service utilisation in the private healthcare setting, Australia 2008-2017: Dataset

description: The dataset contains 30 observations and 22 variables. The dataset is in long format, whereby each observation (i.e. row) represents one calendar year for one of the three manual therapy professions (i.e. chiropractic, osteopathy, and physiotherapy).<br>
DOI: 10.6084/m9.figshare.12178845.v1
title: Manual therapy service utilisation in the private healthcare setting, Australia 2008-2017: Dataset

description: The dataset contains 30 observations and 22 variables. The dataset is in long format, whereby each observation (i.e. row) represents one calendar year for one of the three manual therapy professions (i.e. chiropractic, osteopathy, and physiotherapy).<br>
DOI: 10.18112/openneuro.ds003096.v1.0.1
title: Valuation of peers' safe choices is associated with substance-naivete in adolescents'
DOI: 10.6084/m9.figshare.12966863.v1
title: The Role of Synoptic Characteristics in the Convection Initiation of a Warm-sector Heavy Rainfall Event over Coastal South China: A Numerical Modeling Study

description: Shared data for: The Role of Synoptic Characteristics in the Convection Initiation of a Warm-sector Heavy Rainfall Event over Coastal South China: A Numerical Modeling Study submitted to JGR:Atmosphere
DOI: 10.6084/m9.figshare.12901112
title: Data of laboratory studies on wave propagation through vegetation with coexisting currents.rar

description: This data set was prepared to explore the effect of currents on wave dissipation by vegetation (hereafter referred as WDV) by conducting flume experiments with stiff plant mimics in combined wave-flow conditions. Two flume experiments with following and adverse currents were carried out respectively in a wave flume of the Fluid Mechanics Laboratory at Delft University of Technology and in a 26-m-long, 0.6-m-wide, 0.6-m-high wave and recirculating flume in Sun Yat-sen University. Wave height data, velocity data and force data were obtained in these two flume experiments. Notably, drag coefficient data were calculated using calibration method and direct measurement method. The data sets presented here includes the wave data, velocity data, force data, velocity profile and drag coefficient.
DOI: 10.6084/m9.figshare.12901112.v3
title: Data of laboratory studies on wave propagation through vegetation with coexisting currents.rar

description: This data set was prepared to explore the effect of currents on wave dissipation by vegetation (hereafter referred as WDV) by conducting flume experiments with stiff plant mimics in combined wave-flow conditions. Two flume experiments with following and adverse currents were carried out respectively in a wave flume of the Fluid Mechanics Laboratory at Delft University of Technology and in a 26-m-long, 0.6-m-wide, 0.6-m-high wave and recirculating flume in Sun Yat-sen University. Wave height data, velocity data and force data were obtained in these two flume experiments. Notably, drag coefficient data were calculated using calibration method and direct measurement method. The data sets presented here includes the wave data, velocity data, force data, velocity profile and drag coefficient.
DOI: 10.6084/m9.figshare.12901112.v2
title: Laboratory study on wave propagation through vegetation with coexisting currents.rar

description: This data set was prepared to explore the effect of currents on wave dissipation by vegetation (hereafter referred as WDV) by conducting flume experiments with stiff plant mimics in combined wave-flow conditions. Two flume experiments with following and adverse currents were carried out respectively in a wave flume of the Fluid Mechanics Laboratory at Delft University of Technology and in a 26-m-long, 0.6-m-wide, 0.6-m-high wave and recirculating flume in Sun Yat-sen University. Wave height data, velocity data and force data were obtained in these two flume experiments. Notably, drag coefficient data were calculated using calibration method and direct measurement method. The data sets presented here includes the wave data, velocity data, force data, velocity profile and drag coefficient.
DOI: 10.6084/m9.figshare.12980843.v1
title: R0225_20180606a_videos

description: Rat 0225, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12980912
title: Belowground changes to community structure alter methane-cycling dynamics in Amazonia - Meyer et al. 2020 Environment International

description: This is the dataset corresponding to Meyer et al. 2020. 'Belowground changes to community structure alter methane-cycling dynamics in Amazonia'. Please cite this manuscript when using any of these archived contents.<br><br>Sequences are of the V4 region of the 16S SSU rRNA gene, and were amplified using the 515F-806R primer combination.<br><br>Included here are:1) Fastq files for each sample2) Meta data file with sample names, methane flux rates, soil chemical variables, and land use types and regions (see below for further details) 'MetaDataMeyerEtAl2020_archive.txt'3) ASV community matrix of DNA-based 16S rRNA gene sequences with taxonomy assigned '16S_ASV_Table_EnvIntl_archive.txt'4) ASV IDs for known methanogens and methanotrophs 'Methanogens_trophs_EnvIntl_archive.txt'5) Community attribute table of attributes tested for relationship with methane fluxes (including qPCR data of mcrA and pmoA genes) 'AttributeTableMeyerEtAl2020_archive.txt'6) Representative sequences used to assign taxonomy to ASVs '16S_rep_dna-sequences.fasta'<br>The following Community Attribute data columns correspond to the community attributes presented in Meyer et al. 2020: 'Region' - either in the West (FNV) or the East (Santarem), 'Troph_rel_abun' - methanotroph relative abundance, 'Troph_rich'- methanotroph ASV richness, 'Gen_rel_abun'- methanogen relative abundance, 'Gen_rich' - methanogen ASV richness, 'Richness_16S' - ASV richness of the 16S-inferred community, 'Troph_prop' - proportion of methanotrophs in the methane-cycling community, 'mcra_copy_num' - normalized copy number of mcrA per g of soil, 'pmoa_copy_num' - normalized copy number of pmoA per g of soil, 'PC1-6_16S' - principle components 1 through 6 of 16S-inferred community.<br>' See publication for further details.
DOI: 10.6084/m9.figshare.12980912.v1
title: Belowground changes to community structure alter methane-cycling dynamics in Amazonia - Meyer et al. 2020 Environment International

description: This is the dataset corresponding to Meyer et al. 2020. 'Belowground changes to community structure alter methane-cycling dynamics in Amazonia'. Please cite this manuscript when using any of these archived contents.<br><br>Sequences are of the V4 region of the 16S SSU rRNA gene, and were amplified using the 515F-806R primer combination.<br><br>Included here are:1) Fastq files for each sample2) Meta data file with sample names, methane flux rates, soil chemical variables, and land use types and regions (see below for further details) 'MetaDataMeyerEtAl2020_archive.txt'3) ASV community matrix of DNA-based 16S rRNA gene sequences with taxonomy assigned '16S_ASV_Table_EnvIntl_archive.txt'4) ASV IDs for known methanogens and methanotrophs 'Methanogens_trophs_EnvIntl_archive.txt'5) Community attribute table of attributes tested for relationship with methane fluxes (including qPCR data of mcrA and pmoA genes) 'AttributeTableMeyerEtAl2020_archive.txt'6) Representative sequences used to assign taxonomy to ASVs '16S_rep_dna-sequences.fasta'<br>The following Community Attribute data columns correspond to the community attributes presented in Meyer et al. 2020: 'Region' - either in the West (FNV) or the East (Santarem), 'Troph_rel_abun' - methanotroph relative abundance, 'Troph_rich'- methanotroph ASV richness, 'Gen_rel_abun'- methanogen relative abundance, 'Gen_rich' - methanogen ASV richness, 'Richness_16S' - ASV richness of the 16S-inferred community, 'Troph_prop' - proportion of methanotrophs in the methane-cycling community, 'mcra_copy_num' - normalized copy number of mcrA per g of soil, 'pmoa_copy_num' - normalized copy number of pmoA per g of soil, 'PC1-6_16S' - principle components 1 through 6 of 16S-inferred community.<br>' See publication for further details.
DOI: 10.6084/m9.figshare.12980876
title: R0192_20171022a_videos

description: Rat 0192, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.7150850
title: Interview - Simon Pockley

description: This dataset 'Interview - NAME’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.6084/m9.figshare.7150850.v1
title: Interview - Simon Pockley

description: This dataset 'Interview - NAME’ is a component of a Doctor Of Philosophy conducted by candidate Alexander Hayes (3919493) titled 'The Socioethical Implications Of Body Worn Computers: An Ethnographic Study'. The full thesis can be accessed at https://ro.uow.edu.au/theses1/853<br>This research was conducted in the Faculty of Engineering and Information Systems, School of Computing and Information Technology (SCIT), University of Wollongong with research strength Innovation in Business & Social Research under Principal Supervisor Professor Katina Michael (University of Wollongong) and Associate Supervisor Dr Teemu Leinonen (Aalto University Finland). This thesis explores the socioethical implications of body worn computers (BWC) using an ethnographic approach. Furthermore, a subset, body worn cameras (BWCs), combines data with value added constancy through Location Based Services (LBS) over wireless network connections. The aim of this investigation was to engage global leaders from transdisciplinary stakeholder groups in semi-structured interviews, conversations and events, situating a review of the social impact and ethical implications of BWCs. A critical discourse analysis using a Foucauldian approach reveals power relations, which are then infused through narrative with unique intercultural perspectives, differentiating ‘location’ from ‘place’. The author of this study has subsequently identified through Grounded Theory that BWCs are causal agency for disconnect from proper culture which can be addressed through the application of Ngikalikarra, a unique framework for empathetic understanding of place and community engagement.
DOI: 10.6084/m9.figshare.12980876.v1
title: R0192_20171022a_videos

description: Rat 0192, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.12981113
title: 01-Die_-_CF3-B-ETP_-_Manual (1).pdf

description: Technical data on extrusion die
DOI: 10.6084/m9.figshare.12981113.v1
title: 01-Die_-_CF3-B-ETP_-_Manual (1).pdf

description: Technical data on extrusion die
DOI: 10.6084/m9.figshare.12981215
title: Additional file 2 of Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

description: Additional file 2: Supplementary Table 2. DESeq2 results for the differential expressed bacterial taxa between pre-menopausal women and men.
DOI: 10.6084/m9.figshare.12981215.v1
title: Additional file 2 of Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

description: Additional file 2: Supplementary Table 2. DESeq2 results for the differential expressed bacterial taxa between pre-menopausal women and men.
DOI: 10.6084/m9.figshare.12981221
title: Additional file 4 of Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

description: Additional file 4: Supplementary Table 4. DESeq2 results for the differential expressed bacterial taxa between pre-menopausal women and post-menopausal women.
DOI: 10.6084/m9.figshare.12981221.v1
title: Additional file 4 of Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

description: Additional file 4: Supplementary Table 4. DESeq2 results for the differential expressed bacterial taxa between pre-menopausal women and post-menopausal women.
DOI: 10.6084/m9.figshare.12981218.v1
title: Additional file 3 of Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

description: Additional file 3: Supplementary Table 3. DESeq2 results for the differential expressed bacterial taxa between post-menopausal women and men.
DOI: 10.6084/m9.figshare.12981218
title: Additional file 3 of Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

description: Additional file 3: Supplementary Table 3. DESeq2 results for the differential expressed bacterial taxa between post-menopausal women and men.
DOI: 10.6084/m9.figshare.12981173
title: output_y.csv

description: random dataset for DSCI 560 homework2
DOI: 10.6084/m9.figshare.12981173.v1
title: output_y.csv

description: random dataset for DSCI 560 homework2
DOI: 10.6084/m9.figshare.12981176
title: random_x.csv

description: random dataset for DSCI 560 homework2
DOI: 10.6084/m9.figshare.12981176.v1
title: random_x.csv

description: random dataset for DSCI 560 homework2
DOI: 10.6084/m9.figshare.12981260.v1
title: tRF_Reads.sort.bam.bai

description: 23dsada
DOI: 10.6084/m9.figshare.12981260
title: tRF_Reads.sort.bam.bai

description: 23dsada
DOI: 10.6084/m9.figshare.11874945
title: <i>Microcoleus autumnalis and</i> filamentous algae-dominated mats and chlorophyll-a increase with agricultural land use but respond differently to associated nutrient and sediment enrichment

description: This study investigated the impact of pastoral land use and nutrient and fine sediment inputs on <i>Microcoleus autumnalis</i> and filamentous algae-dominated mats, and benthic chlorophyll-<i>a</i> in streams (lower North Island, New Zealand). Surveying and sampling was undertaken monthly at 61 sites spanning a wide gradient in catchment cover and environmental conditions. Two boosted regression tree models were built. The first models included pastoral land cover and five environmental variables as predictors. In the second model pastoral land cover was replaced by nutrient/sediment data. The abundance of the two mat types and chlorophyll-<i>a</i> increased when pastoral land cover was between 20% and 70% (model 1). Replacement of pastoral land cover by nutrient/sediment data (model 2) slightly improved the model fit for all three periphyton variables. <i>Microcoleus autumnalis</i>-dominant mats increased with dissolved inorganic nitrogen concentrations up to ca. 0.6 mg L<sup>−1</sup>, and in streams with more frequent flushes. In contrast, filamentous algal-dominated mats increased with turbidity, and in streams with less frequent flushes. Chlorophyll-<i>a</i> generally followed the response of the dominant periphyton type. Increased knowledge on responses of specific periphyton types, rather than total biomass, to environmental variables is essential to guide effective management strategies.
DOI: 10.6084/m9.figshare.11874945.v1
title: <i>Microcoleus autumnalis and</i> filamentous algae-dominated mats and chlorophyll-a increase with agricultural land use but respond differently to associated nutrient and sediment enrichment

description: This study investigated the impact of pastoral land use and nutrient and fine sediment inputs on <i>Microcoleus autumnalis</i> and filamentous algae-dominated mats, and benthic chlorophyll-<i>a</i> in streams (lower North Island, New Zealand). Surveying and sampling was undertaken monthly at 61 sites spanning a wide gradient in catchment cover and environmental conditions. Two boosted regression tree models were built. The first models included pastoral land cover and five environmental variables as predictors. In the second model pastoral land cover was replaced by nutrient/sediment data. The abundance of the two mat types and chlorophyll-<i>a</i> increased when pastoral land cover was between 20% and 70% (model 1). Replacement of pastoral land cover by nutrient/sediment data (model 2) slightly improved the model fit for all three periphyton variables. <i>Microcoleus autumnalis</i>-dominant mats increased with dissolved inorganic nitrogen concentrations up to ca. 0.6 mg L<sup>−1</sup>, and in streams with more frequent flushes. In contrast, filamentous algal-dominated mats increased with turbidity, and in streams with less frequent flushes. Chlorophyll-<i>a</i> generally followed the response of the dominant periphyton type. Increased knowledge on responses of specific periphyton types, rather than total biomass, to environmental variables is essential to guide effective management strategies.
DOI: 10.6084/m9.figshare.12854694.v1
title: Community turnover provides insight into variable invertebrate recovery between restored streams with different integrated catchment management plans

description: Understanding temporal patterns in restored environments is important for identifying potential barriers to recovery and improved management of degraded habitats. In this paper, we use temporal beta diversity analyses to compare invertebrate community recovery trajectories in three restored agricultural stream sites under different integrated catchment plans, a native forest reference site, and two unmodified pasture control stream sites over 24 years. The restored sites diverged from their initial community composition over time and became more similar to the reference site community, which was relatively stable over time. Variation partitioning showed that prior to restoration beta diversity was primarily associated with environmental and spatial drivers, whereas post-restoration beta diversity was more influenced by temporal and environmental drivers, including changes in substrate size, fine sediments, water clarity, and nutrients, as well as temperature and flow regime. Species’ contributions to beta diversity varied between sites and years, with sensitive EPT taxa contributing more in reference and control sites. However, contributions of some EPT species, particularly mayflies, increased in restored sites post-ICM. In summary, after nearly two decades of ICM, restored stream sites show recovery towards reference conditions, yet differences persist, indicating that rehabilitation may take longer, depending on the restoration goals.
DOI: 10.6084/m9.figshare.12854694
title: Community turnover provides insight into variable invertebrate recovery between restored streams with different integrated catchment management plans

description: Understanding temporal patterns in restored environments is important for identifying potential barriers to recovery and improved management of degraded habitats. In this paper, we use temporal beta diversity analyses to compare invertebrate community recovery trajectories in three restored agricultural stream sites under different integrated catchment plans, a native forest reference site, and two unmodified pasture control stream sites over 24 years. The restored sites diverged from their initial community composition over time and became more similar to the reference site community, which was relatively stable over time. Variation partitioning showed that prior to restoration beta diversity was primarily associated with environmental and spatial drivers, whereas post-restoration beta diversity was more influenced by temporal and environmental drivers, including changes in substrate size, fine sediments, water clarity, and nutrients, as well as temperature and flow regime. Species’ contributions to beta diversity varied between sites and years, with sensitive EPT taxa contributing more in reference and control sites. However, contributions of some EPT species, particularly mayflies, increased in restored sites post-ICM. In summary, after nearly two decades of ICM, restored stream sites show recovery towards reference conditions, yet differences persist, indicating that rehabilitation may take longer, depending on the restoration goals.