cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24884592.v3
title: Data for: Evidence of environmental niche separation among threatened mobulid rays in Aotearoa New Zealand: Insights from species distribution modelling. <i>Journal of Biogeography.</i>

description: <i>Mobula birostris </i>(oceanic manta ray)<i> </i>dataset, <i>Mobula mobular</i> (spinetail devil ray) dataset and environmental data used for the publication "Evidence of environmental niche separation among threatened mobulid rays in Aotearoa New Zealand: Insights from species distribution modeling" in the Journal of Biogeography. The study looked at the spatial and temporal distribution of mobulid rays (<i>M. birostris </i>and<i> M. mobular</i>) on the northeastern shelf of the North Island over a study period that spanned almost two-decades.Data for <i>M. birostris</i> (n = 366) were collecting by a combined effort from Manta Watch Aotearoa New Zealand and citizen scientists and contains geographic coordinates (in ESPG: 4326 and 2193), year, month and day of observation. Records from the dataset that were missing coordinates or an approximate date reference (month and year) were removed. Points with positional errors (i.e., on land) were also removed. Data for <i>M. mobular</i> (n = 285) was obtained from the New Zealand Ministry for Primary Industries (MPI) Centralised Observer Database (COD) for observer reported captures from 2004 to 2021 and Non-Fish Protected Species Catch Returns (NFPS) for commercial captures from 2008 to 2021. All records were obtained from purse seine fisheries between December and April. <i>Mobula mobular</i> data is classified as commercially sensitive due to the presence of sensitive fishery information. Therefore, to ensure industry sustainability and balance between sharing information only vessel key, catch year and geographic coordinates (in ESPG: 4326 and 2193) is included. All purse seine catch from 2004 to 2021 is also included, used as absence data for the spinetail devil ray model in the publication. The same is true for this data where only vessel key, catch year and geographic coordinates (in ESPG: 4326 and 2193) is included.Environmental data used in the paper is also included. Variables include: Chlorophyll-a (Chl-a) (Gall et al., 2022), Sea surface temperature (SST) (Gall et al., 2022), Chl-a gradient (Pinkerton et al., 2020), SST gradient (Pinkerton et al., 2020), slope (calculated from Mitchell et al., 2012), distance to 200m isobath (dist200) (calculated from Mitchell et al., 2012), distance to coast (distcoast) (calculated from Land Information New Zealand).For dynamic variables, the name of the variable denotes the species (DEVIL or MANTA) and the duration of the study period. Each .RData file is saved as a list where each object is a annual layer that is a raster layer which only includes the months where a presence of the given species was present. Records from the dataset that were missing (i.e., cloud cover) were removed.
DOI: 10.6084/m9.figshare.25039193.v1
title: Untitled Item<b>Simulation and optimization of the hybrid PV/Li-ion battery system</b>

description: A circuit model for the coupling system with PV cells and a charge controller for a Li-ion battery is presented in the MATLAB/Simulink environment.
DOI: 10.6084/m9.figshare.7013003.v3
title: hcp_tractogram.zip

description: Testing tractogram of one of the HCP dataset subjects to be used in DIPY's tutorials.<br><br><br>
DOI: 10.17632/r96kpf7ytb
title: Bidisperse beds sheared by viscous fuids: Grain segregation and bed hardening

description: These files contain both raw and converted movies of the experiments for short (20 to 40 min)- and long-time (140 hrs) evolution of a bidisperse bed sheared by a viscous liquid, in order to analyze segregation rates, their evolution along time, their variation with the applied shearing, and the time evolution of creeping and bedload. In Addition, we uploaded Matlab script for processing images by applying the method presented by Houssais et al., Nat. Commun., 2015. which allows the detection of the grains in each image. Moreover, the scripts use the Kalman filter in order to assign a unique number to each grain that was previously detected in each image. With that, we acquired information such as instantaneous position, size of particles, and identification of each particle in each frame  in .txt files
DOI: 10.6084/m9.figshare.26197850.v1
title: Dataset for Abusive Comments Detection

description: The datasets containing Youtube comments in Tamil collected as the part of shared task on "Abusive Comment Detection in Tamil and Telugu-DravidianLangTech@RANLP 2023". We have taken only the comments in Tamil
DOI: 10.6084/m9.figshare.6141680.v1
title: Dam trout: Genetic variability in Oncorhynchus mykiss above and below barriers in three Columbia River systems prior to restoring migrational access

description: This is a GENEPOP file that contains genotypes for Oncorhynchus mykiss at 13 mSAT loci. Diploid, 1 column format where a 129131 is a 129/131 heterozygote individual. Each line contains the 13 genotypes for a fish. the fish are grouped by collections call POP. POP abbreviations are in Winans et al in press PLOS One by a title of the same name. Loci and PCR conditions described in Winans et al. 2008 NW Science, Vol. 82, Special Issue; and Winans et al. 2010 North American Journal of Fisheries Management 30:742–756. <br>
DOI: 10.6084/m9.figshare.28380002.v1
title: Research data of "Vegetation Succession and Environmental Response during the Mid-to-Late Holocene: Pollen Evidence from an Alpine Lake in Western Sichuan Province, Southwestern China"

description: This dataset provides a quantitative description of the dynamic changes in vegetation during the middle and late Holocene in western Sichuan, Southwest China. It includes metrics such as vegetation diversity, rate of change, fluctuation intensity, and abrupt shifts, and so on.
DOI: 10.6084/m9.figshare.20281998.v4
title: Seurat RData

description: Here, we utilized Microwell-seq to analyze more than 260,000 single cells covering major zebrafish cell types and constructed a systematic zebrafish cell landscape. We revealed single-cell compositions for 18 zebrafish tissue types covering both embryo and adult stages.
DOI: 10.6084/m9.figshare.3553167.v1
title: Appendix C. Flower abundance in different regions of the landscape in spring and summer.

description: Flower abundance in different regions of the landscape in spring and summer.
DOI: 10.6084/m9.figshare.7445720.v1
title: Tree, Log and xml files for Fig. S9 from Cole et al. (2019).

description: This file contains the tree, log and xml files for the calibrated penguin phylogenies (Figure S9) in Cole et al. (2019).
DOI: 10.6084/m9.figshare.19174205.v2
title: Validation of the mental health continuum-short form: The bifactor model of emotional, social, and psychological well-being

description: The current study employed a cross-sectional and correlational research design. An individual was eligible for the study if he/she was above the 18 years old and a citizen or permanent resident (PR) of Singapore or Australia. Participants were either recruited via convenience sampling through the James Cook University’s (Singapore and Australia campuses) research participation program, to which upon completion, received 1 research credit point, or have encountered the study through snowball techniques, primarily distributed via social networks. A total of 588 participants were recruited, but 31 records were omitted due to missing data. Of which, 410 participants were recruited via the university’s research participation program and 147 participants via the snowball technique. The data was then separated into two groups: the Singapore sample, consisting of 299 Singaporeans or PRs; and the Australia sample, consisting of 258 Australians or PRs. <br>Analyses were conducted for each sample separately. Pearson’s correlations coefficients were conducted using the SPSS version 21, confirmatory factor analyses (CFA) were conducted using the AMOS version 21, and the ECV and MacDonald’s 𝜔 indices were calculated using the Bifactor Indices Calculator by Dueber. All statistical analyses were conducted with alpha level set at .05. <br>
DOI: 10.6084/m9.figshare.28586963.v1
title: MatRIS-v0.5.0-MPtrj kappa data(25.3.13)

description: MatRIS-v0.5.0-MPtrj kappa data(25.3.13)
DOI: 10.6084/m9.figshare.14217326.v1
title: Data for “Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes”

description: This repository contains the derivedData for adt_bgcs, including output from antiSMASH, Kallisto, MetaPhlAn, and networks for CytoScape.
DOI: 10.6084/m9.figshare.26322568.v1
title: code and data for "Terabit-scale high-fidelity diamond data storage"

description: Data and code used to support the article “Terabit-scale high-fidelity diamond data storage”
DOI: 10.6084/m9.figshare.26396407.v1
title: Search strategy

description: This document is a contains the parameters of the search terms to be used for a systematic review and meta-analysis protocol investigating "Patient satisfaction with infection prevention control practices in the acute hospital setting"
DOI: 10.6084/m9.figshare.22551586.v1
title: Borrie et al primary data for MCB 3_31_2023.xlsx

description: Book of Excel spreadsheets with the primary data for the figures in Borrie, Kraycer and Gartenberg, Mol Cell Biol, 2023
DOI: 10.6084/m9.figshare.24037926.v1
title: Umaña_procb_ESM_Code from The interplay of drought and hurricanes on tree recovery: insights from dynamic and weak functional responses

description: R code
DOI: 10.6084/m9.figshare.4818280.v1
title: Data file for Study 3 from Creating beauty: creativity compensates for low physical attractiveness when individuals assess the attractiveness of social and romantic partners

description: Although creativity is attractive in a potential mate, it is unclear (i) whether the effects of creativity on attractiveness generalize to other social contexts and (ii) whether creativity has equivalent effects on men's and women's attractiveness. As social knowledge of creativity may either enhance or ‘offset’ the appeal of social partners who differ in physical attractiveness, three repeated measures experiments were conducted to directly address these issues. Here, participants rated a series of face–text pairs for attractiveness on trials that differed in one of four combinations of facial attractiveness (attractive and less attractive) and creativity (creative and less creative), rating story-tellers in two experiments (short interpretations of an identical painting) and creative ideas in a further experiment (alternate uses for an everyday object). Regardless of the sex of the judge, creativity and facial attractiveness had independent effects on men's overall attractiveness (initial experiment), and, in further experiments, more substantial effects on the attractiveness of men with less attractive faces than men with attractive faces (when using a different measure of creativity) and specific effects on the attractiveness of individuals with less attractive faces (when using different face stimuli). Collectively, across three experiments, these findings suggest that creativity may compensate for putative cues to lower biological ‘quality’ and that the benefits of creativity to social groups more generally enhance attraction to creative men (in two experiments) and creative men and women (one experiment). More broadly, the data suggest that species can integrate knowledge of cognitive intelligence with visual cues to biological ‘quality’ to facilitate mate and/or ally choice.
DOI: 10.17632/nvxbf7m8h9
title: DDX39A Resolves Replication Fork-associated RNA-DNA Hybrids to Balance Fork Protection and Cleavage for Genomic Stability Maintenance. Zhanzhan Xu et al

description: Uncropped Gel, Blot, and Microscopy Images.
DOI: 10.6084/m9.figshare.24512935.v1
title: Adipose tissue single nucleus RNAseq data

description: Adipose tissue is usually classified on the basis of its function as white, brown or beige (brite)<sup>1</sup>. It is an important regulator of systemic metabolism, as shown by the fact that dysfunctional adipose tissue in obesity leads to a variety of secondary metabolic complications<sup>2</sup><sup>,</sup><sup>3</sup>. In addition, adipose tissue functions as a signalling hub that regulates systemic metabolism through paracrine and endocrine signals<sup>4</sup>. Here we use single-nucleus RNA-sequencing (snRNA-seq) analysis in mice and humans to characterize adipocyte heterogeneity. We identify a rare subpopulation of adipocytes in mice that increases in abundance at higher temperatures, and we show that this subpopulation regulates the activity of neighbouring adipocytes through acetate-mediated modulation of their thermogenic capacity. Human adipose tissue contains higher numbers of cells of this subpopulation, which could explain the lower thermogenic activity of human compared to mouse adipose tissue and suggests that targeting this pathway could be used to restore thermogenic activity.https://doi.org/10.1038/s41586-020-2856-x
DOI: 10.6084/m9.figshare.26020411.v1
title: datasets for experiments with sphere nn

description: This dataset contains datasets related with the experiments with sphere nn.
DOI: 10.6084/m9.figshare.9222809.v3
title: New information on the braincase and endocranial morphology of the Late Triassic neotheropod <i>Zupaysaurus rougieri</i> using computed tomography data

description: <i>Zupaysaurus rougieri</i> is an early neotheropod from the middle Norian Los Colorados Formation of northwestern Argentina represented by an almost complete skull and several postcranial bones. Most of its braincase morphology has remained obscured by other skull bones and sediment. Additional mechanical preparation and X-ray computed tomography on the single known specimen of <i>Zupaysaurus</i> has allowed a detailed description of the braincase, the cranial endocast, and the inner ear of this Triassic dinosaur. Basal theropod braincases are poorly sampled and there is little information on this region, and even poorer knowledge on the brain and inner ear anatomy of Triassic forms. The virtual reconstruction of the braincase of <i>Zupaysaurus</i> shows anteroventrally oriented, finger-like basipterygoid processes, an elongate and horizontally projected cultriform process, and well-developed preotic pendant, basisphenoid recess, and subsellar recess. The endocranial morphology is partially reconstructed, showing an anteroposteriorly short but dorsoventrally tall cranial endocast, with well-marked demarcations between the forebrain, midbrain, and hindbrain. The inner ear preserves the three semicircular canals, but not the lagena. The posterior semicircular canal is proportionally large when compared with that of other theropods. The new information presented here on <i>Zupaysaurus rougieri</i> contributes to the knowledge of the neuroanatomy of basal theropods and sheds light on the evolutionary patterns of the braincase morphology in nonavian Theropoda.
DOI: 10.17632/z43wnrwmvh
title: Beyond the Lab: Crafting Compelling Narratives in Chemistry Communication for Broad Audiences

description: This research evaluates the effectiveness of using narrative strategies to improve public comprehension and interaction with intricate chemical ideas, with a focus on audiences outside of the traditional scientific domain. The study looks at how well-written narratives affect the relatability and accessibility of chemical knowledge for a range of audiences, including the general public, policymakers, educators, and students. It explores how effective chemical communication projects employ storytelling techniques, discusses the difficulties in converting complex scientific terminology into engrossing narratives, and offers possible answers. The results highlight the ways in which narrative-driven communication may close knowledge gaps, improve scientific literacy.
DOI: 10.6084/m9.figshare.12996791.v1
title: mRNA-miRNAseq human-EV

description: mRNAseq and miRNAseq raw data
DOI: 10.6084/m9.figshare.20072252.v3
title: Calb20_2021-01-22_13-08-20

description: Electrophysiology recording
DOI: 10.6084/m9.figshare.1000636.v1
title: MaleTok

description: Tokens
DOI: 10.6084/m9.figshare.23094290.v2
title: Supplementary Material for: Risk Factors for Coronary Artery Aneurysm in a Chinese Pediatric Population with Kawasaki Disease at Low Risk of Intravenous Immunoglobulin Resistance: A Retrospective Cohort Study

description: INTRODUCTION: Multiple scoring systems for predicting intravenous immunoglobulin (IVIG) resistance have been developed. Although low-scoring patients with Kawasaki disease (KD) have a favorable prognosis, many develop coronary artery aneurysms (CAA). Herein, we determined the risk factors for developing CAA among patients with KD with low risk of IVIG resistance. METHODS: We compared 14 scoring systems for predicting IVIG resistance among patients with KD hospitalized from 2003 to 2022. Patients were risk-stratified using an optimal scoring system. Association between baseline characteristics and CAA development was assessed within the low-risk group. RESULTS: Overall, 664 pediatric patients with KD were included; 108 (16.3%) had IVIG resistance, and the Liping scoring system had the highest area under the curve (0.714). According to this system, 444 (66.9%) patients with KD were classified as having low risk of developing IVIG resistance (&lt;5 points). CAA development was significantly associated with male sex (odds ratio [OR], 1.946; 95% CI: 1.015–3.730), age &lt;6 months at fever onset (OR, 3.142; 95% CI: 1.028–9.608), and a baseline maximum Z score of ≥2.72 (OR, 3.451; 95% CI: 2.582–4.612). CAA incidence increased with the number of risk factors, and comparisons with a Kobayashi score of &lt;5 points among patients with KD revealed similar results. CONCLUSION: Predicting the response to IVIG might help in further reducing CAA development in patients with KD.
DOI: 10.6084/m9.figshare.4884854.v1
title: Processing data (rho and Z scores) for sgRNAs in Minimal Library screen

description: Processing data (rho and Z scores) for sgRNAs in Minimal Library screen
DOI: 10.25405/data.ncl.14150093.v1
title: Crossover in the dynamical critical exponent of a quenched two-dimensional Bose gas

description: Dataset supporting the publication: Crossover in the dynamical critical exponent of a quenched two-dimensional Bose gas, Physical Review Research, 3 013212 (2021).
DOI: 10.6084/m9.figshare.27014170.v6
title: Incorporating Verification Standards for Security Requirement Generation from Functional Specifications

description: The data used in the paper "Incorporating Verification Standards for Security Requirement Generation from Functional Specifications" is published here. For detailed explanations, please refer to Readme.md
DOI: 10.6084/m9.figshare.16577303.v1
title: absorption spectra

description: absorption spectra data
DOI: 10.6084/m9.figshare.25930198.v1
title: Supplementary Material for: Effects of ambient air pollution on brain cortical thickness and subcortical volume: A longitudinal neuroimaging study

description: Introduction: Long-term exposure to air pollutants is associated with an increased risk of Alzheimer’s disease and mild cognitive impairment. Therefore, we investigated the association between long-term air pollution exposure and changes in neuroimaging markers.
Methods: In this longitudinal study, we studied a prospective cohort of 361 adults residing in four cities in the Republic of Korea. Long-term concentrations of particulate matter with aerodynamic diameters of ≤10 μm (PM10) and ≤2.5 μm (PM2.5) and nitrogen dioxide (NO2) at residential addresses were estimated. Neuroimaging markers (cortical thickness and subcortical volume) were obtained from brain magnetic resonance images at baseline (August 2014 to March 2017) and at the 3-year follow-up (until September 2020). Linear mixed-effects models were used, adjusting for covariates.
Results: A 10-μg/m3 increase in PM10 was associated with reduced whole-brain mean (β= -0.45, standard error (SE)= 0.10, P&lt; 0.001), frontal (β= -0.53, SE= 0.11; P&lt; 0.001) and temporal thicknesses (β= -0.37, SE= 0.12; P= 0.002). A 10-ppb increase in NO2 was associated with a decline in the whole brain mean cortical thickness (β= -0.23, SE= 0.05; P&lt; 0.001), frontal (β= -0.25, SE= 0.05; P&lt; 0.001), parietal (β= -0.12, SE= 0.05; P= 0.025), and temporal thicknesses (β= -0.19, SE= 0.06; P= 0.001). Subcortical structures associated with air pollutants include the thalamus volume. 
Conclusions: Long-term exposure to PM10 and NO2 may lead to cortical thinning in adults.
DOI: 10.6084/m9.figshare.26162998.v1
title: <b>The optimal sugar components provide essential cues for the formation of host-specialized cotton-melon aphids</b>

description: The cotton-melon aphid (<i>Aphis gossypii</i> Glover) is a worldwide agricultural pest with a variety of biotypes, causing a high level of economic loss. Cucurbitaceae biotype (CA) and Malvaceae biotype (MA) are two prevalent host-specialized biotypes of cotton-melon aphids in many countries, including China. We further addressed the role of plant nutritional status, especially sugar metabolism, in the formation of host-specialized biotypes in cotton-melon aphids.
DOI: 10.6084/m9.figshare.26778256.v1
title: <b>Chromosome-level genome assembly and annotation of </b><b>Anthurium amnicola</b>

description: Genome assembly and annotation of Anthurium amnicola.
DOI: 10.6084/m9.figshare.6100181.v2
title: OTU table at phylotype level as text file

description: OTU table as a text file created from sequencing performed by Molecular Research DNA, Shallowater, TX, USA using 2x250bp with their pipeline. OTUs are given at a 97% clustering and aggregated on phylotype-level taxonomy.<br><br>Sample names are given as rows, genera labelled as columns.<br>
DOI: 10.17632/s63ppr7jvv
title: C. molle data J Ngwisha

description: Research Hypothesis
Combretum molle extracts possess significant antibacterial properties.

Data Overview
Collected data includes antibacterial activity of various C. molle extracts tested against pathogens like S. aureus, E. coli, and P. aeruginosa. Parameters include susceptibility, MIC values, and statistical analyses.

Data Collection Method
Extract Preparation: Hexane, Ethyl Acetate: Hexane, DCM, and Ethanol extracts.
Antibacterial Testing: Tested against pathogens.
Susceptibility Testing: Categorized as Susceptible (S), Intermediate (I), or Resistant (R).
Notable Findings
Hexane and DCM Extracts: Significant antibacterial activity.
Variability: Different pathogens show varying susceptibility to extracts.
Interpretation
Combretum molle extracts show potent antibacterial properties, with notable variability across pathogens.

Detailed Summary
ODs and Suscept DCM & Ethanol: OD and susceptibility data (241 rows).
C. molle MIC Data: MIC values for different extracts (19 rows).
C. molle vs tetracycline ANOVA: ANOVA comparing efficacy with tetracycline (14 rows).
C. molle Paired TTest: Paired T-Test results (13 rows).
Cidal_Static Data: Bactericidal vs. bacteriostatic results (23 rows).
PILOT RUN- ETHANOL EXTRACTS: Preliminary ethanol extract data (26 rows).
EXHAUSTIVE EXTRACTIONS DATA: Detailed extraction procedures (22 rows).
Conclusion
Combretum molle extracts, especially Hexane and DCM, exhibit strong antibacterial effects, supporting further research and potential clinical applications.
DOI: 10.6084/m9.figshare.15112488.v1
title: Metadata record for: Gutenberg Gait Database, a ground reaction force database of level overground walking in healthy individuals

description: This dataset contains key characteristics about the data described in the Data Descriptor Gutenberg Gait Database, a ground reaction force database of level overground walking in healthy individuals. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format