cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/a8y-c4y-zse
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e3v-y56-h0c
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/612-cp5-ee6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qd5-41y-lsv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/crxw2b22m4
title: Data for: Transportation vs. Public Service: Understanding Residential Location Choice Using Emergy Synthesis of Local Governments in Pennsylvania State
DOI: 10.3535/9mw-4s7-lmv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/px2vrcd8ty
title: Data for the cross-cultural adaptation of the French version of the Trinity Amputation and Prosthesis Experience Scales - Revised (TAPES-R)

description: The aim of our study was to validate the French version of the TAPES questionnaire and to assess its measurements propreties. The cross-cultural adaptation was performed according to the recommendations. Factor analysis and Rasch analysis were also performed to allow comparison with the original English version. Construct validity was assessed by measuring the correlations between TAPES-R-F subscores and quality of life, pain, body image satisfaction, anxiety and depression. Internal consistency was measured with Cronbach’s α. The standard error of measurement, smallest detectable change, Bland and Altman limits of agreement, and intraclass correlation were the measures of agreement and reliability.
DOI: 10.3535/5gl-ws6-5h3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/654-2fc-n4a
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11295047.v1
title: Mass tourism underwater: a segmentation approach to motivations of scuba diving holiday tourists

description: Scuba diving is an increasingly popular activity in resort destinations worldwide, providing tourists a more active experience in their holiday. By following the Push and Pull Theory, this study examines the scuba diving motivations of holiday tourists. Whilst of substantial importance for the practice of the activity, host marine destinations and broader ocean literacy, this an under-researched topic in the tourism literature. Data were collected from a comprehensive data set of holiday tourists who participated scuba diving in Kemer, Antalya-Turkey. <i>Exploration & excitement, personal development</i>, and <i>socialisation & challenge</i> were identified as the push motivations, while <i>tourism & diving offerings</i>, <i>safety & accessibility</i>, <i>ancillary attributes</i>, <i>new area</i>, and <i>unspoiled diving destination</i> were determined as the pull motivations. Moreover, cluster analysis revealed four groups who had various motivations to participate scuba diving, namely <i>Enthusiastic Positivists, Youthful Hedonists, Amateur Explorers</i>, and <i>Single Regulars.</i> Findings of the research were discussed along with their theoretical and managerial implications.
DOI: 10.3535/dzl-y6c-w6k
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hw9-ne4-hmk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/6yf-8fp-h4m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ncd-r1j-4dc
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/6tdsnrxbc2
title: Passive responses in mouse hind leg locomotion

description: Mice are of a size at which passive joint and muscle forces should be important in leg movements. To investigate this issue we measured, in anesthetized mice, hind leg passive movements in response to changes in animal orientation relative to gravity and to manual deflections of the leg. Changing gravity orientation did not rotate leg joints to their physiological extremes, indicating that passive responses limit joint rotation range. The manual leg deflections were sufficient to achieve joint angles overlapping those present in published descriptions of mouse locomotion. Upon release from these deflections, the legs returned to intermediate postures. These results show that passive responses are 1) present at locomotory joint angles and 2) sufficiently large, at these angles, to move the leg. Return amplitude depended linearly on deflection amplitude. The slope of this dependence was the same across leg joints, suggesting it is evolutionarily or developmentally selected for. Combining the extremes of our passive response data and published descriptions of joint angles during mouse locomotion (e.g., most flexed passive response mouse with most extended published locomotion pattern) allowed determining when in a locomotory cycle passive responses could be definitely extending or flexing. In three of these four combinations, only extending passive responses could be definitely present in the locomotory patterns. In the fourth, alternatively, both extending and flexing passive responses could be definitely present. Passive responses thus likely act during mouse hind leg locomotion, but their amplitude and even sign may vary across individual mice.
DOI: 10.17632/r2g5zkwp7s
title: JuTrack: A Julia package for auto-differentiable accelerator modeling and particle tracking

description: Efficient accelerator modeling and particle tracking are key for the design and configuration of modern particle accelerators. In this work, we present JuTrack, a nested accelerator modeling package developed in the Julia programming language and enhanced with compiler-level automatic differentiation (AD). With the aid of AD, JuTrack enables rapid derivative calculations in accelerator modeling, facilitating sensitivity analyses and optimization tasks. We demonstrate the effectiveness of AD-derived derivatives through several practical applications, including sensitivity analysis of space-charge-induced emittance growth, nonlinear beam dynamics analysis for a synchrotron light source, and lattice parameter tuning of the future Electron-Ion Collider (EIC). Through the incorporation of automatic differentiation, this package opens up new possibilities for accelerator physicists in beam physics studies and accelerator design optimization.
DOI: 10.3535/x7t-h9t-ssy
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zym-xtc-e8y
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19839241.v2
title: PRISMA-P Checklist.docx

description: PRISMA-P Checklist
DOI: 10.3535/3ym-cds-zyx
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/54c-mav-ppj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3676549_d4.v1
title: Additional file 5: of Transcriptome analysis reveals dynamic changes in coxsackievirus A16 infected HEK 293T cells

description: Differently expressed target genes between CVA16-infected and CVA16-non-infected cell samples. (XLS 403 kb)
DOI: 10.17632/kc4h4mh8n7
title: Impact assessment of single dose rifampicin post-exposure prophylaxis

description: Background/Introduction

Leprosy control remains a challenge in Nepal. Single-dose rifampicin post-exposure prophylaxis (SDR-PEP) shows promise in reducing leprosy incidence among contacts of index cases, contributing to reducing the transmission of Mycobacterium (M.) leprae. This study evaluates the effectiveness of routine SDR-PEP implementation in Nepal in addition to contact screening, focusing on its impact on reducing leprosy risk among contacts and potential population-level effects.
Methodology

We conducted a retrospective cohort study to compare leprosy case notification rates and leprosy risk among close contacts. We compared two districts implementing SDR-PEP (the intervention group) and two without (the comparator group). Data from 2015 onwards included demographics, index case types, and contact relationships. Statistical analyses, including Cox regression and Kaplan-Meier survival curves, assessed the impact of SDR-PEP implementation.

Findings

All four districts showed a decrease in case notification rates since 2015, with the steepest decline in the intervention districts. The risk of developing leprosy among contacts was significantly lower in the intervention districts (HR 0.28, 95% CI 0.18-0.44). SDR-PEP offered 72% protection, consistent over time, as shown in Kaplan-Meier plots. The protective effect was equally strong in blood-related contacts (HR 0.29 versus 0.27 in others, p=0.32), and the proportion of MB cases among incident cases was not significantly different post-PEP (51.4% vs. 53.6%, p=0.82).

Conclusions

This study demonstrates the substantial protective effect of integrating SDR-PEP in routine leprosy control programs with contact screening, significantly lowering leprosy risk among contacts. SDR-PEP is equally effective for blood-related contacts and does not preferentially prevent PB cases. While suggesting potential population-level impact, the study design does not allow for firm conclusions at this level. Further research is needed to fully assess SDR-PEP's effectiveness in diverse contexts and optimize its implementation. Integrating SDR-PEP within well-organized contact screening programs is effective and is expected to reduce leprosy transmission when applied as a rolling intervention.

Keywords: Routine leprosy Control, Single-dose rifampicin (SDR), Post-exposure Prophylaxis (PEP), SDR-PEP Implementation, Contact Screening,
DOI: 10.17632/zy3rw458n7
title: Effects of bariatric surgery on COVID-19: a multicentric study from a high incidence area

description: Introduction: The favorable effects of bariatric surgery (BS) on overall pulmonary function and obesity-related comorbidities could play a role against SARS-CoV-2 infection. This has been investigated comparing Covid-19 incidence and clinical course between a cohort of patients submitted to BS and a cohort of obese candidates to BS during the spring outbreak in Italy. Materials and Methods: From April to August 2020, 594 patients from 6 major bariatric centers in Emilia-Romagna were administered an 87-item telephonic questionnaire. Demographics, Covid-19 incidence, suggestive symptoms and clinical outcome parameters of operated patients and candidates to BS were compared. The incidence of symptomatic Covid-19 was assessed including the clinical definition of probable case, according to World Health Organization criteria. Results: 353 operated patients (Op) and 169 candidates for BS (C) were finally included in the statistical analysis. While Covid-19 incidence confirmed by laboratory tests was similar in the two groups (5.7% vs 5.9%), lower incidence of most of Covid-19-related symptoms, such as anosmia (p: 0.046), dysgeusia (p: 0.049), fever with rapid onset (p: 0.046) were recorded among Op patients, resulting in a lower rate of probable cases (14,4% vs 23,7%; p: 0.009). Hospitalization was more frequent in C patients (2.4% vs 0.3%, p: 0.02). One death in each group was reported (0.3% vs 0.6%). Previous pneumonia and malignancies resulted to be associated with symptomatic Covid-19 at univariate and multivariate analysis. Conclusion: patients submitted to BS seem to develop less severe SARS-CoV-2 infection than obese subjects.
DOI: 10.3535/9ae-bn9-em0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m9l-t85-rs1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.7398533.v1
title: Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT

description: The file set uploaded are Raw data in the research project of "Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT", which was published in Communications Chemistry (2019) 2: 20 (doi: 10.1038/s42004-019-0118-3)
DOI: 10.17632/bdcsk5nk7b
title: Indicadores Económicos Mensuales Seleccionados de

description: La Junta de Planificación produce y recopila indicadores económicos que sirven para medir y visualizar la actividad económica de Puerto Rico. Los indicadores incluyen datos históricos de variables como (1) grupo trabajador, (2) empleo y desempleo, (3) turismo, (4) construcción, (5) energía eléctrica, (6) ingresos netos al Fondo General, (7) comercio exterior, (8) quiebras por capítulos, (9) ventas al detalle, (10) índice de precios al consumidor y (11) precio promedio mensual de la gasolina al detal. Las tablas que se publican presentan información comparativa de los cambios absolutos y porcentuales de mes a mes y respecto al año anterior (las series se presentan sin ajustes estacionales, para cada año fiscal y para el año natural). Igualmente, se publican documentos y gráficas de series históricas seleccionadas. Para información adicional puede comunicarse vía email diaz_a@jp.pr.gov y perez_m@jp.pr.gov.
DOI: 10.3535/bnb-mp0-hz6
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wek-ck0-c75
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b98-ln8-nlr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z8x-16x-fjv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/77wpsgr8ch
title: Virtual patient analysis identifies strategies to improve the performance of predictive biomarkers for PD-1 blockade

description: This repository contains the computational code for biomarker testing algorithm developed by the Popel Systems Biology Laboratory. 
https://popellab.johnshopkins.edu/.
DOI: 10.25910/ezvn-tr59
title: Universal Health Care Delivery Mitigates Socioeconomic-Related Risk for Adverse Outcomes in Hospitalised Patients : Lessons from the COVID-19 Pandemic in Australia

description: Objectives: Internationally, socioeconomic disadvantage is related to severe outcomes of COVID-19. We investigated the impact of socioeconomic disadvantage on infection rates, hospitalisation, and in-hospital outcomes for COVID-19 with standardised medical care. Design: Retrospective cross-sectional study. Setting: SARS-CoV-2 PCR-confirmed patients, ≥18 years old, admitted to a major public hospital between January 2020 and December 2021. Main outcome measurements: Severe COVID-19 outcomes were defined by a composite outcome of in-hospital death or other critical complications. A generalised linear regression model of demographic features, co-existing conditions, and socioeconomic status [Socioeconomic Index for Area (SEIFA)] was used to determine the risks of the composite outcome. Results: Of 797,343 individuals aged ≥18 in the health district, 50,906 (6.4%) were PCR-positive, and 1,962 were hospitalised. Compared with the whole health district population, infected individuals were younger (median [interquartile range] age 35 [25-48] years vs 42 [31-58] years) and from areas with the greatest socioeconomic disadvantage (34.4% vs 20%; both p<0.0001). Hospitalised patients were older, with more females compared to the PCR-positive group (46 years [33-61], 53.5%, respectively; p<0.001), and 51.2% were from postcodes with greatest socioeconomic disadvantage (p<0.0001). The composite outcome occurred in 11.5%, with an in-hospital mortality of 3.8%. Higher risk of the composite outcome was observed in males (OR 1.72, 95% CI [1.26-2.42], p <0.001), patients aged ≥ 65 years (OR 6.96, [3.3-14.6], p <0.001), those with ≥4comorbidities (OR 2.67, [1.54-4.63], p <0.001), and unvaccinated patients (OR 1.57, [1.05-2.38], p < 0.05). The risk of composite outcome did not increase with socioeconomic disadvantage (OR 0.97, [0.68, 1.42], p = 0.64). Conclusion: In the absence of capacity restraints, socioeconomic disadvantage was not associated with severe in-hospital outcomes in a well-resourced care environment despite the increased rates of infection and hospitalisation. This highlights the impact of universally accessible, standardised, protocolised, high-quality in-hospital care in reducing the risk of adverse in-hospital outcomes in socioeconomically disadvantaged patients.
DOI: 10.3535/6sq-qmp-pn2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qcp-q4f-8gn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/td9-jh0-144
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.15086167
title: Data and code for "A selfish supergene causes meiotic drive through both sexes in Drosophila"

description: Data and code release for Keais et al. (2025). A selfish supergene causes meiotic drive through both sexes in Drosophila. Proceedings of the National Academies of Sciences, doi:10.1073/pnas.2421185122
DOI: 10.6084/m9.figshare.21064123.v1
title: Data for figures and results

description: Data for figures and results
DOI: 10.17632/fbz9h24z6g
title: Supplementary Appendix - Prospective Cohort Study of Psoriatic Arthritis Risk in Patients With Psoriasis in a Real-World Psoriasis Registry

description: Supplementary Appendix - Prospective Cohort Study of Psoriatic Arthritis Risk in Patients With Psoriasis in a Real-World Psoriasis Registry
DOI: 10.3535/7m6-q6e-jq8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/h4s-lr5-7pd
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.5281/zenodo.15086166
title: Data and code for "A selfish supergene causes meiotic drive through both sexes in Drosophila"

description: Data and code release for Keais et al. (2025). A selfish supergene causes meiotic drive through both sexes in Drosophila. Proceedings of the National Academies of Sciences, doi:10.1073/pnas.2421185122
DOI: 10.3535/cvj-jcz-lwf
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gfg-7rv-ccv
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mqh-1tt-xfb
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qa9-pbe-5t8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nsy-daq-lsk
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/36b-brj-zk3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jka-tmg-5s7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26636412.v1
title: Additional file 3 of Alterations to DNA methylation patterns induced by chemotherapy treatment are associated with negative impacts on the olfactory pathway

description: Additional file 3. Association between chemotherapy and DNA methylation in CpG probes (pre- and post-chemotherapy paired samples in 125 breast cancer patients). Presented here are associations that reached statistical significance at a Bonferroni threshold p-value of &lt;8.49e-8. Standard error = stdev.unscaled * s2.post.
DOI: 10.3535/ssv-yn2-xff
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wq6-3nx-lg1
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/k9z74vfgwf
title: In vivo two-photon calcium imaging dataset_Day 4

description: Two-photon calcium imaging was performed using resonant scanning two-photon microscopy (B-scope; Thorlabs, USA), and a Ti:Sapphire pulsing laser (Chameleon Ultra II, Coherent, USA) tuned to 920 nm. GCaMP6f fluorescence emission was isolated by a band-pass filter (525/50, Semrock, USA) and detected by a GaAsP photomultiplier tube (Hamamatsu, Germany). Images were acquired through a 20x water immersion objective (1.00 N.A.; Olympus, Japan) with a frame rate of 14.7 Hz (real-time averaging by 4) for bidirectional scanning at a resolution of 256 x 256 pixels (300 x 300 µm field of view) and controlled by ThorImageLS imaging software (version 2.4). In order to prevent light leakage from the VR displays into the microscope, a custom-made black foam ring was used between the microscope objective and the head-plate. Imaging and behavioral data were synchronized by custom-written code (MATLAB, MathWorks, MA, USA). Images were collected at a single L2/3 focal plane per animal at cortical depths between 120 and 180 µm, and the same RSC region was imaged across multiple days.
DOI: 10.3535/m8y-w4d-lq2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zce-vqp-an9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xnckzpgxj8
title: Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster - Miguel-Escalada et al.

description: This repository contains processed files from 1) mouse single-cell datasets (scRNA-Seq and scATAC-Seq from E10.5 pancreatic multipotent progenitors (MPCs) and scATAC-Seq from E13.5 pancreas) and 2) human MPCs H3K27ac, PTF1A and Mediator ChIP-Seq (BED and BigWig files). 

Raw sequencing reads have been deposited in the Gene Expression Omnibus (GEO) public repository at NCBI (https://www.ncbi.nlm.nih.gov/geo/) under accession number GSE183674.
DOI: 10.3535/d5a-nqx-qs2
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/mcd-naj-lbj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27118521.v2
title: Supplementary information- List of SSRs

description: List of SSRs
DOI: 10.17632/xpy48m29y8
title: Data for: Cation exchange controls riverine magnesium isotopes in extremely-high-erosion catchments

description: Raw data for all figures in the manuscript by Yang Xu et al. to be published by Geochimica et Cosmochimica Acta as "Cation exchange controls riverine magnesium isotopes in extremely-high-erosion catchments".