cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34894/89dm6o
title: An economical and highly adaptable optogenetics system for individual and population-level manipulation of Caenorhabditis elegans

description: This dataset contains the raw imaging files of the following study.

Background: Optogenetics allows the experimental manipulation of excitable cells by a light stimulus without the need for technically challenging and invasive procedures. The high degree of spatial, temporal and intensity control that can be achieved with a light stimulus, combined with cell type-specific expression of light-sensitive ion channels, enables highly specific and precise stimulation of excitable cells. Optogenetic tools have therefore revolutionized the study of neuronal circuits in a number of models, including Caenorhabditis elegans. Despite the existence of several optogenetic systems that allow spatial and temporal photoactivation of light-sensitive actuators in C. elegans, their high costs and low flexibility have limited wide access to optogenetics. Here, we developed an inexpensive, easy-to-build, modular and adjustable optogenetics device for use on different microscopes and worm trackers, which we called the OptoArm.

Results: The OptoArm allows for single- and multiple-worm illumination and is adaptable in terms of light intensity, lighting profiles and light-color. We demonstrate the OptoArm′s power in a population-based multi-parameter study on the contributions of motor circuit cells to age-related motility decline. We found that individual components of the neuromuscular system display different rates of age-dependent deterioration. The functional decline of cholinergic neurons mirrors motor decline, while GABAergic neurons and muscle cells are relatively age-resilient, suggesting that rate-limiting cells exist and determine neuronal circuit aging.

Conclusion: We have assembled an economical, reliable and highly adaptable optogenetics system which can be deployed to address diverse biological questions. We provide a detailed description of the construction as well as technical and biological validation of our set-up. Importantly, use of the OptoArm is not limited to C. elegans and may benefit studies in multiple model organisms, making optogenetics more accessible to the broader research community
description: Please use the "Tree" view option to see the organisation of the folders and files.
DOI: 10.17026/dans-x9z-rcvj
title: Hallum, Mariengaarderweg 2, Gemeente Ferwerderadiel (Fr.). Een Inventariserend Archeologisch Veldonderzoek.
title: 2016-09/02

description: &lt;p&gt;Door De Steekproef bv is een plangebied onderzocht aan de Mariengaarderweg 2 te Hallum in de gemeente Ferwerderadiel.&lt;br&gt;De aanleiding voor het onderzoek is het voornemen om de sloot ten zuiden van het boerderijterrein tien meter naar het zuiden te verleggen. De hiertoe benodigde graafwerkzaamheden zouden tot aantasting van archeologische waarden kunnen leiden. Het onderzoek had tot doel om vast te stellen of dergelijke waarden aanwezig kunnen zijn.&lt;br&gt;Uit het bureauonderzoek blijkt dat het plangebied in een archeologisch monument (boerderijplaats) ligt met een hoge archeologische waarde. In het gespecificeerd archeologisch verwachtingsmodel is uitgegaan van een middelhoge kans op resten uit de ijzertijd tot de middeleeuwen. Voor resten uit eerdere perioden geldt in verband met de relatief recente wordingsgeschiedenis van het landschap een lage archeologische verwachting. Om de archeologische verwachting te toetsen zijn in het plangebied acht gutsboringen gezet en is langs de noordrand van het plangebied een oppervlaktekartering uitgevoerd.&lt;br&gt;Uit de resultaten van het booronderzoek blijkt dat de bovenste dertig tot zestig centimeter van de bodem uit een humusrijke bouwvoor bestaat. Deze bouwvoor is het dikst op het langs de sloot gelegen deel van het plangebied. Deze sloot vormt van oudsher de grens tussen het plangebied en de ten noorden hiervan gelegen historische boerderijplaats. Van deze boerderijplaats is afval in de sloot terechtgekomen dat vervolgens bij het uitbaggeren van de sloot over de naastgelegen akker is uitgespreid. Het betreft puin en resten van aardewerk dat in de boringen in de bouwvoor is aangetroffen en tijdens de oppervlaktekartering aan het maaiveld is gevonden. De bouwvoor ligt op gelaagde getijde-afzettingen die op het oostelijke deel van het plangebied aanmerkelijk zandiger zijn dan op het westelijke deel. In deze getijden-afzettingen zijn in geen van de boringen archeologische indicatoren gevonden. Evenmin zijn in het plangebied vegetatiehorizonten aanwezig die samen zouden kunnen hangen met bewoning in de prehistorie of de middeleeuwen. De resultaten van het onderzoek geven derhalve geen aanleiding om archeologisch vervolgonderzoek te adviseren. Evenmin zijn archeologische resten gevonden waarmee tijdens de verdere planvorming rekening zou moeten worden gehouden.&lt;/p&gt;
description: &lt;p&gt;2016-09/02&lt;/p&gt;
DOI: 10.3535/2vg-ky9-5w0
title: Diaphora mendica (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/77q-yb8-xxg
title: Lasiocampa quercus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.27448560
title: What is the optimal In2Care stations density to achieve Aedes aegypti population reduction in a dengue endemic setting?

description: <b>Background:</b> Autodissemination traps are among the most innovative strategies for suppressing mosquito vector populations. These traps are particularly effective against <i>Aedes aegypti</i> due to the species' skip oviposition behavior, where eggs from a single clutch are distributed across multiple breeding sites. Evaluating the efficacy of In2Care stations under field conditions, especially in a dengue-endemic setting, is crucial for understanding their potential impact.<b>Methodology/Principal Findings:</b> A total of 3,250 In2Care stations were deployed in Goiânia, the 10th largest city in Brazil, with an estimated population of 1.45 million. The field study lasted 14 months, with each station serviced bi-monthly. To assess the impact of In2Care, 318 ovitraps were installed and inspected weekly to measure changes in the number of positive ovitraps and the average number of eggs laid by <i>Ae. aegypti</i> females in intervention areas compared to control neighborhoods. Over the course of the study, 666,204 eggs were sampled.<b>Conclusions/Significance:</b> The density of In2Care stations varied across neighborhoods, ranging from 220 to 555 stations per km². In the Tremendão area, which had the highest density (~555 stations per km²), the Ovitrap Positivity Index (OPI) decreased from 56.9% to 31.5%, while the average number of eggs per positive paddle dropped from 41.2 to 18.1—representing a 56% reduction in egg counts. Conversely, in SL Universitário, which had the lowest station density (~220 stations per km²), no significant effect was observed. These results demonstrate that In2Care stations can effectively suppress <i>Ae. aegypti</i> populations over large geographic areas, with efficacy likely influenced by trap density.
DOI: 10.6084/m9.figshare.27448560.v3
title: What is the optimal In2Care stations density to achieve Aedes aegypti population reduction in a dengue endemic setting?

description: <b>Background:</b> Autodissemination traps are among the most innovative strategies for suppressing mosquito vector populations. These traps are particularly effective against <i>Aedes aegypti</i> due to the species' skip oviposition behavior, where eggs from a single clutch are distributed across multiple breeding sites. Evaluating the efficacy of In2Care stations under field conditions, especially in a dengue-endemic setting, is crucial for understanding their potential impact.<b>Methodology/Principal Findings:</b> A total of 3,250 In2Care stations were deployed in Goiânia, the 10th largest city in Brazil, with an estimated population of 1.45 million. The field study lasted 14 months, with each station serviced bi-monthly. To assess the impact of In2Care, 318 ovitraps were installed and inspected weekly to measure changes in the number of positive ovitraps and the average number of eggs laid by <i>Ae. aegypti</i> females in intervention areas compared to control neighborhoods. Over the course of the study, 666,204 eggs were sampled.<b>Conclusions/Significance:</b> The density of In2Care stations varied across neighborhoods, ranging from 220 to 555 stations per km². In the Tremendão area, which had the highest density (~555 stations per km²), the Ovitrap Positivity Index (OPI) decreased from 56.9% to 31.5%, while the average number of eggs per positive paddle dropped from 41.2 to 18.1—representing a 56% reduction in egg counts. Conversely, in SL Universitário, which had the lowest station density (~220 stations per km²), no significant effect was observed. These results demonstrate that In2Care stations can effectively suppress <i>Ae. aegypti</i> populations over large geographic areas, with efficacy likely influenced by trap density.
DOI: 10.34894/ebjbmf
title: Dataset: Three weeks of wheelchair racing propulsion practice in able-bodied novices

description: The current dataset belongs to a manuscript titled "Evolution of wheelchair racing propulsion technique over three weeks of wheeling practice on an instrumented ergometer in able-bodied novices". The aims of the study were to investigate the acquisition of wheelchair racing propulsion technique in a sample of novices and compare their technique to that of an experienced athlete. The dataset contains data of 15 subjects that completed a standardized three-week submaximal uninstructed practice protocol. During these three weeks, they practiced three sessions per week and performed three blocks of four minutes of exercise per session in a racing wheelchair on an instrumented wheelchair ergometer. Kinematics, physiological, and kinetics data were recorded.
description: Python, 3.8
description: Lode Ergometry Manager, 10
description: COSMED OMNIA
description: NDI First Principles
DOI: 10.34894/ie5gch
title: PHREEQC Databases YMP and Soltherm

description: Databases YMP (data0.YMP.R5) and Soltherm (Soltherm H06, latest update June 2016), converted to a format suitable for thermodynamic modelling software PHREEQC. Converted set only - credit of the original databases go to the creators as mentioned in Alsemgeest et al, 2021.

Including Source code to convert from TOUGHREACT/GeoT format to PHREEQC
DOI: 10.3535/hwy-x41-lcr
title: Macrothylacia rubi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t9e-qgv-gbc
title: Lasiocampa quercus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.6084/m9.figshare.27448560.v2
title: What is the optimal In2Care stations density to achieve Aedes aegypti population reduction in a dengue endemic setting?

description: <b>Background:</b> Autodissemination traps are among the most innovative strategies for suppressing mosquito vector populations. These traps are particularly effective against <i>Aedes aegypti</i> due to the species' skip oviposition behavior, where eggs from a single clutch are distributed across multiple breeding sites. Evaluating the efficacy of In2Care stations under field conditions, especially in a dengue-endemic setting, is crucial for understanding their potential impact.<b>Methodology/Principal Findings:</b> A total of 3,250 In2Care stations were deployed in Goiânia, the 10th largest city in Brazil, with an estimated population of 1.45 million. The field study lasted 14 months, with each station serviced bi-monthly. To assess the impact of In2Care, 318 ovitraps were installed and inspected weekly to measure changes in the number of positive ovitraps and the average number of eggs laid by <i>Ae. aegypti</i> females in intervention areas compared to control neighborhoods. Over the course of the study, 666,204 eggs were sampled.<b>Conclusions/Significance:</b> The density of In2Care stations varied across neighborhoods, ranging from 220 to 555 stations per km². In the Tremendão area, which had the highest density (~555 stations per km²), the Ovitrap Positivity Index (OPI) decreased from 56.9% to 31.5%, while the average number of eggs per positive paddle dropped from 41.2 to 18.1—representing a 56% reduction in egg counts. Conversely, in SL Universitário, which had the lowest station density (~220 stations per km²), no significant effect was observed. These results demonstrate that In2Care stations can effectively suppress <i>Ae. aegypti</i> populations over large geographic areas, with efficacy likely influenced by trap density.
DOI: 10.17026/dans-x9z-rd9y
title: Rapportage Archeologische Begeleiding. Kerkplein, Ruurlo
title: SYNTHEGRA 2001 066

description: &lt;p&gt;onderzoeksrapport&lt;/p&gt;
DOI: 10.34894/vledmk
title: Improving the findability of Utrecht University datasets
title: data and reports on DataverseNL and Yoda

description: These data and reports are the outcome of a project the purpose of which is to gain insight into the findability of Utrecht University’s (UU) research datasets, in order to be able to improve it. The data is on 24 search engines that allow searching for research data sets, in particular on their size, functionality, and coverage of Utrecht University data sets shared publicly on the Yoda and DataverseNL data publication platforms. The reports also deal with issues regarding findability and include recommendations to solve these issues.
DOI: 10.3535/l8m-53r-fll
title: Poecilocampa populi Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m38-mm2-b2n
title: Yponomeuta mahalebella Guenée, 1845

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34894/fcxdrf
title: Data: Subjective disgust and facial EMG responses towards unedited and morphed overweight self-pictures in women with varying levels of eating disorder symptomatology.

description: Individuals with an eating disorder (ED) often report to be disgusted by their body. Body-related self-disgust could play an important role in the development and maintenance of EDs. We investigated if women with relatively high ED symptom scores indeed respond with disgust upon exposure to their body as indexed by facial electromyography (fEMG) of the m. levator labii superioris and self-report. Given that one’s self-disgust may increase/decrease depending on the relative distance of the own body to the thin ideal, we also assessed women’s disgust for overweight- and thin-morphs of their body. Female undergraduate students (N = 104) were photographed and presented with their (morphed) body pictures, next to disgust-relevant and overweight body control pictures. Higher levels of ED symptoms were associated with stronger self-reported disgust to unedited body-pictures and overweight-morphs. Disgust to thin-morphs was unrelated to ED symptoms. Participants generally showed heightened facial disgust towards overweight morphs, yet the strength of facial disgust was unrelated to ED symptoms. Thus, the findings provide evidence for the involvement of heightened body-related self-disgust in ED symptomatology, albeit only on the basis of self-report.
description: SPSS
DOI: 10.34894/x39uzd
title: Honey Buzzard chick sex and biometry, weather and wasp abundance

description: Data on chicks and nests of Honey Buzzards, found in Netherlands (1973-2014), Belgium, Germany, Poland (1996-2014). Data on weather variables in 4 weather stations of KNMI (1974-2014). Data on abundance of social wasps in Veluwe and Drenthe (1974-2014).
DOI: 10.3535/r3p-cmh-y3m
title: Hipparchia mersina Staudinger, 1871

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zwk-v0d-k2s
title: Adscita (Adscita) statices (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34894/2gxsfj
title: Jonathan Ilgen - PhD project data for study 1

description: This study explores practicing emergency physicians’ experiences with uncertainty in their clinical work, seeking to understand how appraisals of comfort manifest in these moments, the origins of these appraisals, and how these appraisals impact how these clinicians move through these challenging moments in practice.
DOI: 10.3535/55j-v3e-nfn
title: Thumatha senex (Hübner, 1804)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yas-am8-147
title: Ochropacha duplaris (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34894/5lkzia
title: Jonathan Ilgen - PhD project data for study 2

description: This study explores novice emergency medicine trainees’ experiences with uncertainty in their clinical work, seeking to understand how appraisals of comfort manifest in these moments, the origins of these appraisals, and how these appraisals impact how these clinicians move through these challenging moments in practice. We also explored the impact of supervision, and the ways in which supervision shapes trainees’ experiences with uncertainty.
DOI: 10.3535/0kd-rdf-hym
title: Gastropacha (Stenophylloides) populifolia (Esper, 1784)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dbg-8xn-r80
title: Nola cucullatella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-x9z-s62v
title: Sint Oedenrode - Hoge Vonderstraat. Een Archeologische opgraving

description: &lt;p&gt;Van 23 oktober tot en met 25 oktober 2006 heeft er archeologisch onderzoek plaats gevonden op de locatie Hoge Vonderstraat / Kofferen in St. Oedenrode.&lt;br&gt;Het plangebied heeft een oppervlakte van ca. 0.,4 ha. en lag op het moment van opgravingen braak Het gebied ligt aan de Hoge Vonderstraat en wordt begrensd door het Kofferen. In het gebied is 1 werkput aangelegd met een totale oppervlakte van 321 m2. In vlak 1 waren een aantal sporen zichtbaar die waarschijnlijk uit de 19e eeuw afkomstig zijn. In vlak 2 zijn veel sporen aangetroffen, onder andere een gracht (ook in het vooronderzoek uit 2000 aangetroffen), vier waterputten (waarvan een waarschijnlijk uit de 15e eeuw stamt), greppels, kuilen en paalkuilen, waarvan een mogelijke structuur is te reconstrueren.&lt;/p&gt;
description: Date: 23 oktober 2006 - 25 oktober 2006 (onderzoeksperiode)
DOI: 10.34894/ircbs8
title: Dataset of Neural correlates of error-monitoring and mindset: back to the drawing board?

description: This dataset contains the raw data (EEG, task performance, questionnaire), task files and protocol, syntax, and the final dataset, of Janssen et al. (2021) - Neural correlates of error-monitoring and mindset: back to the drawing board? - PLOS ONE.
description: Brain Vision Analyzer 2, 2.2
description: E-prime, 2.0
description: SPSS, 26
DOI: 10.3535/fwd-ktg-7se
title: Cybosia mesomella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yw4-r5s-31n
title: Cybosia mesomella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34894/ipf3ti
title: Interpretation bias in online and offline social environments and associations with social anxiety, peer victimization, and avoidance behavior

description: Miers, A. C., Sumter, S. R., Clark, D. M, & Leigh, E. (2020). Cognitive Therapy and Research.
DOI: 10.3535/c5t-w2q-py1
title: Watsonalla binaria (Hufnagel, 1769)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kbf-j3c-tdq
title: Thyris fenestrella (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-x9z-s7qy
title: PAN-00068577 - barbed spring key with shield-formed head

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00068577&lt;/p&gt;
description: Modified: 2020-06-18T11:21:15+02:00
DOI: 10.34894/6jfvi3
title: A cross-sectional and longitudinal network analysis approach to understanding connections among social anxiety components in youth

description: Miers, A. C., Weeda, W. D., Blöte, A. W., Cramer, A. O. J., Borsboom, D., & Westenberg, P. M. (2020). Journal of Abnormal Psychology, 129, 82–91. http://dx.doi.org/10.1037/abn0000484
DOI: 10.3535/77m-6zl-xzs
title: Trichiura crataegi (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vfs-q04-ytl
title: Cilix glaucata (Scopoli, 1763)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.34894/nvnhyg
title: Social media use and the not-so-imaginary audience: Behavioral and neural mechanisms underlying the influence on self-concept

description: Peters, S. Van der Cruijsen, R., Van der Aar, L.P.E, Spaans, J. P., Becht, A. I., & Crone, E. A. (2021). Developmental Cognitive Neuroscience, 48, 100921. https://doi.org/10.1016/j.dcn.2021.100921
DOI: 10.34894/rfuggd
title: Physiological synchrony is associated with attraction in a blind date setting

description: E. Prochazkova, E. E. Sjak-Shie, F. Behrens, D. Lindh & M. E. Kret (2021) Nature Human Behavior
DOI: 10.3535/p0d-pr2-e0r
title: Saturnia (Eudia) pavonia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q27-34c-p0v
title: Tetheella fluctuosa (Hübner, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.17026/dans-x9z-stxg
title: Boxtel, Muntelse hoeve 14 en 16
title: Inventariserend veldonderzoek door middel van proefsleuven

description: &lt;p&gt;In opdracht van Actief Bodembeheer de Kempen heeft BAAC bv (onderzoeks- en adviesbureau voor Bouwhistorie, Archeologie, Architectuur- en Cultuurhistorie) te ‘s-Hertogenbosch, een Inventariserend Veldonderzoek door middel van proefsleuven (IVO-P) uitgevoerd in het plangebied Munselse Hoeve 14 en 16 te Boxtel. Aanleiding tot het onderzoek vormt de voorgenomen sanering van de door zinkassen vervuilde bodem in delen van de tuinen van de betreffende percelen. Bij de bodemingrepen zal de ondergrond in het plangebied worden geroerd waardoor eventuele archeologische resten worden bedreigd.&lt;/p&gt;&lt;p&gt;In het plangebied zijn vijf proefsleuven gegraven. Door beperkingen konden niet alle proefsleuven in hun volle omvang conform het PvE worden aangelegd. De beperkingen bestonden uit het handhaven van terras, vijver en zwembaden en delen van de beplanting. Tevens was de ruimte beperkt voor het aanleggen van de proefsleuven en het deponeren van de uitgegraven grond. De wijzigingen ten opzichte van het PvE betreft een geringere lengte en breedte van de aangelegde proefsleuven. Tevens is daarom de plaatsing van proefsleuf 1 die gericht was op een gebouwtje dat hier verwacht werd, ten opzichte van het puttenplan uit het PvE gewijzigd.&lt;/p&gt;&lt;p&gt;De bodemopbouw in het plangebied is deels verstoord. Deze verstoring reikt meestal tot in de C-horizont, met uitzondering van de noordelijk gelegen sleuven 1 en 2, waar nog een begraven akkerlaag werd vastgesteld. In het plangebied zijn geen sporen aangetroffen. Uit de proefsleuven blijkt dat grote delen van het plangebied zijn verstoord door recente graafwerkzaamheden. Grotendeels kunnen deze recente verstoringen worden toegewezen aan de aanleg en/of sloop van de voormalige stallen en schuren. Tevens is bij de aanleg van de twee zwembaden de bodem verstoord. Vondstmateriaal werd niet aangetroffen. De resultaten van het IVO-p geven aanleiding tot het advies het plangebied Munselse Hoeve 14 en 16 vrij te geven wat betreft archeologie.&lt;/p&gt;