cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17086142.v1
title: mollusca_platyhelminthes_merged_bioawk_cdhit_1.fasta.gz

description: database used for the major analysis of 2150 SRA datasets as presented in the thesis
DOI: 10.6084/m9.figshare.17086175
title: ncbi_gastropoda_all.txt

description: List of all 2150 Gastropoda SRA datasets from NCBI analyses in the framework of the Mphil thesis
DOI: 10.6084/m9.figshare.17086175.v1
title: ncbi_gastropoda_all.txt

description: List of all 2150 Gastropoda SRA datasets from NCBI analyses in the framework of the Mphil thesis
DOI: 10.15468/f2ryd4
title: First record of Loisirella Holzinger, Holzinger & Egger, 2013 and description of a new species from Brazil (Hemiptera: Fulgoromorpha: Cixiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Viegas, Eduarda Fernanda Gomes, Ale-Rocha, Rosaly, Takiya, Daniela Maeda (2021): First record of Loisirella Holzinger, Holzinger & Egger, 2013 and description of a new species from Brazil (Hemiptera: Fulgoromorpha: Cixiidae). Zootaxa 5072 (1): 88-94, DOI: https://doi.org/10.11646/zootaxa.5072.1.10
DOI: 10.5255/ukda-sn-855309
title: Checking Out: Exploring the Impact of Poverty on End of Life and Bereavement Through Interviews with Bereaved Individuals With Lived Experience and Professionals Working in Low-Income Communities in the UK, 2020-2021

description: The Checking Out project is a small qualitative study exploring attitudes towards, and experiences of, death and dying in low-income communities in the UK. The aims of the project are to explore the notion of ‘a good death’ within low-income communities, to understand the impact of poverty on experiences of end of life and bereavement and to advance understanding of the ways in which fear, stigma and trust impact on communication, relations (between patients, carers, families, social networks, healthcare professionals and organisations) and access to end-of-life care. This dataset includes interviews with bereaved individuals (n=14) and professionals involved in supporting people experiencing poverty at end of life or in bereavement (n = 15) and represents one strand of the Checking Out study.
DOI: 10.6084/m9.figshare.17086172.v1
title: SM3. Selected data from the MIS 11 marine deposits of the Canary Islands, Spain

description: This data set contains a selection of reliable data from the main MIS (Marine Isotope Stage) 11 marine sites of paleontological and paleoclimatic interest from the Canary Islands, Spain. There are three sections: (1) Topographical Location of the selected sites, in terms of UTM coordinates and Heights (m), above the present medium sea level (a.p.s.l.); (2) Geology and Radiometric ages, including a short geological description of the marine deposits, their radiometric ages and dating methods; (3) Paleontology and Paleoclimate, with a summary of the main fossil fauna, species and/or subspecies, collected from the sites and properly classified in accordance with the Systematic Paleontology; and an interpretation of the paleoclimatic conditions at the time the fossils lived and were deposited. Moreover, when available, values of SST (Sea Surface Temperature) have been also calculated (or estimated). Each section is presented with their available scientific source(s).
DOI: 10.6084/m9.figshare.17086172
title: SM3. Selected data from the MIS 11 marine deposits of the Canary Islands, Spain

description: This data set contains a selection of reliable data from the main MIS (Marine Isotope Stage) 11 marine sites of paleontological and paleoclimatic interest from the Canary Islands, Spain. There are three sections: (1) Topographical Location of the selected sites, in terms of UTM coordinates and Heights (m), above the present medium sea level (a.p.s.l.); (2) Geology and Radiometric ages, including a short geological description of the marine deposits, their radiometric ages and dating methods; (3) Paleontology and Paleoclimate, with a summary of the main fossil fauna, species and/or subspecies, collected from the sites and properly classified in accordance with the Systematic Paleontology; and an interpretation of the paleoclimatic conditions at the time the fossils lived and were deposited. Moreover, when available, values of SST (Sea Surface Temperature) have been also calculated (or estimated). Each section is presented with their available scientific source(s).
DOI: 10.17197/u21006
title: U21006 Äldres försörjning i den tidiga välfärdsstaten

description: Datauttaget kommer att fungera som en utgångspunkt för studier om hur äldre (över 60 år) klarade sin försörjning i Sverige mellan 1890 och 1960; en period som innefattar den statliga ålderspensionens tillkomst och utveckling mot att bli en heltäckande försörjning. Kontexten som undersöks är Västerbottens län. Den forskning som studerat äldres försörjning i Sverige har nästan uteslutande studerat agrart präglade eller urbana områden. Därför är ytterligare ett syfte med denna avhandling att studera norrländska områden som skogsbygder och områden med småbruk. Utredare och systemutvecklare vid CEDAR, avdelningen för Demografiska databasen, har arbetat med att ta ut data från databasen POPLINK. POPLINK är en databas som innehåller länkade individuppgifter från kyrkoregister som husförhörslängder, församlingsböcker, flyttningslängder, födelse- och dopböcker, lysning- och vigselböcker samt död- och begravningsböcker.
DOI: 10.15468/wqv7ya
title: Taxonomic changes in the Neotropical Arctiinae, Arctiini (Lepidoptera, Erebidae) relating to the fauna of Trinidad and Tobago

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cock, Matthew J. W., Laguerre, Michel (2021): Taxonomic changes in the Neotropical Arctiinae, Arctiini (Lepidoptera, Erebidae) relating to the fauna of Trinidad and Tobago. Zootaxa 5071 (2): 253-270, DOI: https://doi.org/10.11646/zootaxa.5071.2.5
DOI: 10.5281/zenodo.5729639
title: Proofs from interactive and automated theorem provers to evaluate Kontroli & Dedukti

description: This dataset contains proofs in the Dedukti format<br> from the interactive theorem provers (ITPs) Matita, HOL Light, and Isabelle/HOL, as well as<br> from the automated theorem provers (ATPs) iProver Modulo and Zenon Modulo.<br> This data is used in the evaluation of the proof checkers Kontroli and Dedukti.
DOI: 10.15468/ay4veq
title: A new Afrolimnophila Alexander from Europe (Diptera: Limoniidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Starý, Jaroslav, Kolcsár, Levente-Péter (2021): A new Afrolimnophila Alexander from Europe (Diptera: Limoniidae). Zootaxa 5072 (1): 95-100, DOI: https://doi.org/10.11646/zootaxa.5072.1.11
DOI: 10.6084/m9.figshare.17081366
title: Species-level 3255 Buffalo digestive tract metagenome MAGs

description: Species-level 3255 Buffalo digestive tract metagenome MAGs.Buffalo is an important livestock in Asia. Like other ruminants, its digestive tract (DT) is the key to the quality and wellbeing of buffalo and heavily interacts with microbes. Here, we present a comprehensive survey on the microbial ecology along buffalo’s DT, including eight sites in three sections (i.e., four-chambered stomach, intestine, and rectum). We collected 695 samples, performed metagenomic sequencing, and obtained 4,960 metagenome-assembled genomes (MAGs), to which ~85% of the raw reads could be mapped. 90.7% of the MAGs are previously unidentified at the species level. Overall, Firmicutes and Bacteroidetes are the most abundant phyla; their ratios showed an increasing trend along the DT, consistent with their functions in the DT sections. We identified known interactions between microbes and DT sites including the enrichment of fiber-digesting and methane-producing microbes in the four-chambered stomach. Strikingly, archaea were highly abundant in both four-chambered stomach and intestine, and showed positive correlations with Fibrobacter, indicating their roles in methane-production and fiber-degradation at both sections. We annotated 5,862,748 non-redundant proteins from the MAGs, many of which also showed different abundances and were related to site-specific functions. By comparing with the rumen microbiota of cattle, we found higher abundances of microbes in fiber degradation and but lower in methane production. Our catalog of microbial genomes and encoded proteins provides insight into their functions and interactions with distinct DT sites, and paves the way to microbial interventions for better buffalo quality.<br>
DOI: 10.5281/zenodo.5729672
title: NicheNet networks update data

description: cf separate doc for explanation
DOI: 10.5281/zenodo.5142373
title: Data for "Electroferrofluids with Non-Equilibrium Voltage-Controlled Magnetism, Diffuse Interfaces, and Patterns"

description: This dataset contains the raw data used for the publication "Electroferrofluids with Non-Equilibrium Voltage-Controlled Magnetism, Diffuse Interfaces, and Patterns".
DOI: 10.5281/zenodo.5142372
title: Data for "Electroferrofluids with Non-Equilibrium Voltage-Controlled Magnetism, Diffuse Interfaces, and Patterns"

description: This dataset contains the raw data used for the publication "Electroferrofluids with Non-Equilibrium Voltage-Controlled Magnetism, Diffuse Interfaces, and Patterns".
DOI: 10.5517/ccdc.csd.cc27vw33
title: CCDC 2081405: Experimental Crystal Structure Determination

description: Related Article: Kiyoshi Fujisawa, Syuhei Sakuma, Riko Ikarugi, Anex Jose, Edward I. Solomon|2021|J.Inorg.Biochem.|225|111597|doi:10.1016/j.jinorgbio.2021.111597
DOI: 10.5517/ccdc.csd.cc27vw44
title: CCDC 2081406: Experimental Crystal Structure Determination

description: Related Article: Kiyoshi Fujisawa, Syuhei Sakuma, Riko Ikarugi, Anex Jose, Edward I. Solomon|2021|J.Inorg.Biochem.|225|111597|doi:10.1016/j.jinorgbio.2021.111597
DOI: 10.6084/m9.figshare.17086199
title: SM4. Selected data from the Mio-Pliocene marine deposits of the Canary Islands, Spain

description: This dataset contains a selection of reliable data from the main Late Miocene and Early Pliocene marine sites of paleontological and paleoclimatic interest from the Canary Islands, Spain. There are three sections: (1) Topographical location of the selected sites, in terms of UTM coordinates and heights (m), above present sea level (APSL); (2) geology and radiometric ages, including a short geological description of the marine deposits, their radiometric ages and dating methods; (3) paleontology and paleoclimate, with a summary of the main fossil fauna, species and/or subspecies, collected from the sites and properly classified in accordance with the systematic paleontology; and an interpretation of the paleoclimatic conditions at the time the fossils lived and were deposited. Moreover, when available, values of SST (Sea Surface Temperature) have been also calculated (or estimated). Each section is presented with their available scientific source(s).
DOI: 10.15468/sx5wr6
title: A new species of Nogunius Jałoszyński in Japan (Coleoptera: Staphylinidae Scydmaeninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jałoszyński, Paweł, Nomura, Shûhei (2021): A new species of Nogunius Jałoszyński in Japan (Coleoptera: Staphylinidae Scydmaeninae). Zootaxa 5071 (2): 283-288, DOI: https://doi.org/10.11646/zootaxa.5071.2.7
DOI: 10.5281/zenodo.5707772
title: Evaluation of the AdriSC Climate Component: Ocean Results

description: This dataset is accompanying the article "Performance of the Adriatic Sea and Coast (AdriSC) climate component – a COAWST V3.3-based one-way coupled atmosphere–ocean modelling suite: ocean results” published in Geoscientific Model Development (Volume 14, Pages 5927-5955, https://doi.org/10.5194/gmd-14-5927-2021) and contains processed model and observational data used for the evaluation of the ocean part of the AdriSC climate simulation (1987-2017).
DOI: 10.5281/zenodo.5729713
title: Supplemental Material S2 for "Development of a highly sensitive luciferase-based reporter system to study two-step protein secretion in cyanobacteria"

description: Table S1. Densitometric analysis of NLuc immunoblot in Fig. 2A. Figure S1. PilA1 quantification in the sheared pili fractions of WT, Δ<em>hfq</em> and Δ<em>pilT1</em> <em>Synechocystis</em> mutants.
DOI: 10.5281/zenodo.5729712
title: Supplemental Material S2 for "Development of a highly sensitive luciferase-based reporter system to study two-step protein secretion in cyanobacteria"

description: Table S1. Densitometric analysis of NLuc immunoblot in Fig. 2A. Figure S1. PilA1 quantification in the sheared pili fractions of WT, Δ<em>hfq</em> and Δ<em>pilT1</em> <em>Synechocystis</em> mutants.
DOI: 10.15468/add2jg
title: A new species of fossil Calosoma (Coleoptera: Carabidae) from the Geumgwangdong Formation (Early Miocene), South Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lee, Soo Bin, Nam, Gi-Soo (2021): A new species of fossil Calosoma (Coleoptera: Carabidae) from the Geumgwangdong Formation (Early Miocene), South Korea. Zootaxa 5072 (1): 1-11, DOI: https://doi.org/10.11646/zootaxa.5072.1.1
DOI: 10.15468/ms5epn
title: Three new species of Lachesilla in the rufa group (Psocodea: Psocomorpha: Lachesillidae) from the Sierra Tarahumara, Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Aldrete, Alfonso Neri García, Casasola-González, José Arturo (2021): Three new species of Lachesilla in the rufa group (Psocodea: Psocomorpha: Lachesillidae) from the Sierra Tarahumara, Mexico. Zootaxa 5071 (2): 289-295, DOI: https://doi.org/10.11646/zootaxa.5071.2.8
DOI: 10.6084/m9.figshare.14169500.v3
title: SARS-COV-2 INFECTION IN CANCER PATIENTS: A POPULATION-BASED STUDY

description: Study population: all the residents in the Veneto and Friuli Venezia Giulia Regions (north-eastern Italy) who were consecutively tested for SARSCoV-2 infection between February 22nd and July 31st, 2020.Study variables: · demographics (age, sex) · comorbidities · history of malignant disease (prevalent diagnosis of malignant cancer, cancer site, interval between diagnosis of cancer and testing for SARS-CoV-2 infection) · clinical outcomes of SARS-CoV-2 infection (admission to hospital; admission to Intensive Care Unit; death)<br>
DOI: 10.34740/kaggle/dsv/2855619
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.5729765
title: Replication Package of: "From Anecdote to Evidence: The Relationship Between Personality and Need for Cognition"

description: Several anecdotes suggests that software engineers enjoy engaging in solving puzzles and other cognitive efforts. This tendency to engage in and enjoy effortful thinking is referred to as a person's 'need for cognition.' An open question is, however, whether developers differ from the general population in their scores of need for cognition. To address this question, we conducted a large-scale sample study of 483 software engineers. Personality plays a significant role in people's behavior and is stable over time, and is therefore considered a defining characteristic of individuals. We analyzed the data using multiple Bayesian linear regression analyses. The results indicate that ca. 33% of variation in developers' need for cognition can be explained by personality traits. Given the importance of human factors for software developer performance in general, and problem solving skills in particular, answering this question has substantial implications, such as recruitment & retention, working behaviour, and teaming.
DOI: 10.5281/zenodo.5336277
title: Replication Package of: "From Anecdote to Evidence: The Relationship Between Personality and Need for Cognition"

description: Several anecdotes suggests that software engineers enjoy engaging in solving puzzles and other cognitive efforts. This tendency to engage in and enjoy effortful thinking is referred to as a person's 'need for cognition.' An open question is, however, whether developers differ from the general population in their scores of need for cognition. To address this question, we conducted a large-scale sample study of 483 software engineers. Personality plays a significant role in people's behavior and is stable over time, and is therefore considered a defining characteristic of individuals. We analyzed the data using multiple Bayesian linear regression analyses. The results indicate that ca. 33% of variation in developers' need for cognition can be explained by personality traits. Given the importance of human factors for software developer performance in general, and problem solving skills in particular, answering this question has substantial implications, such as recruitment & retention, working behaviour, and teaming.
DOI: 10.5281/zenodo.5728710
title: Host-adaptation in Legionellales is 1.9 Gya, coincident with eukaryogenesis

description: This dataset contains genomes, proteomes and protein alignments mentioned in Hugoson et al (2021). It has been used to analyze the evolution of host-adaptation in the order Legionellales. The data is organized by dataset type, and then by dataset. The four datasets used here are <strong>Gamma105</strong>, comprising 105 <em>Gammaproteobacteria</em> and 5 outgroups; <strong>Legio93</strong>, comprising 93 <em>Legionellales</em> and 20 outgroups; <strong>Bacteria134</strong>, built on Gamma105, adding 27 genomes from Betts et al. (2018) <strong>Bacteria93</strong>, built by removing <em>Legionella</em>, <em>Francisella</em>, <em>Fangia</em> and <em>Piscirickettsia</em> genera from Bacteria134 <strong>1_genomes</strong><br> Genomes as downloaded or assembled 1_1_Gamma105 1_2_Legio93 <strong>2_proteomes</strong><br> Proteomes, as annotated by prokka 2_1_Gamma105 2_2_Legio93 2_3_Bacteria134 <strong>3_alignments</strong> In the first three and the fifth folders, the following files are found. All sequence and alignment files are in fasta format: *_concatenated.fasta: concatenated alignment, trimmed. *.map: map of the files, tab-separated. The first row is a title row. The three first columns give the organism, the marker and the id (as found in the fasta file) for the protein. *_unaligned: non-aligned sequences for each marker. *_aligned: aligned sequences, for each marker. The prefix gives the software used for the alignment. *_trimmed: aligned, trimmed sequences for each marker. The prefix gives the software used to trim the alignment. <strong>3_1_Gamma105</strong>: Based on the Bact109 set of markers. <strong>3_2_Legio93</strong>: Based on the Bact109 set of markers. <strong>3_3_Bacteria134</strong>: Based on Gamma105 set and Bact109 set of markers. <strong>3_4_Bacteria93</strong>: Based on Bacteria134 (removed fast-evolving genomes). <strong>3_5_TB4SS_auto</strong>: Alignment of 12 genes of the T4BSS, automatically detected in all genomes. <strong>3_6_TB4SS_manual</strong>: Alignment of 25 genes of the T4BSS, manually curated by collinearity analysis.
DOI: 10.5281/zenodo.3543579
title: Host-adaptation in Legionellales is 1.9 Gya, coincident with eukaryogenesis

description: This dataset contains genomes, proteomes and protein alignments mentioned in Hugoson et al (2021). It has been used to analyze the evolution of host-adaptation in the order Legionellales. The data is organized by dataset type, and then by dataset. The four datasets used here are <strong>Gamma105</strong>, comprising 105 <em>Gammaproteobacteria</em> and 5 outgroups; <strong>Legio93</strong>, comprising 93 <em>Legionellales</em> and 20 outgroups; <strong>Bacteria134</strong>, built on Gamma105, adding 27 genomes from Betts et al. (2018) <strong>Bacteria93</strong>, built by removing <em>Legionella</em>, <em>Francisella</em>, <em>Fangia</em> and <em>Piscirickettsia</em> genera from Bacteria134 <strong>1_genomes</strong><br> Genomes as downloaded or assembled 1_1_Gamma105 1_2_Legio93 <strong>2_proteomes</strong><br> Proteomes, as annotated by prokka 2_1_Gamma105 2_2_Legio93 2_3_Bacteria134 <strong>3_alignments</strong> In the first three and the fifth folders, the following files are found. All sequence and alignment files are in fasta format: *_concatenated.fasta: concatenated alignment, trimmed. *.map: map of the files, tab-separated. The first row is a title row. The three first columns give the organism, the marker and the id (as found in the fasta file) for the protein. *_unaligned: non-aligned sequences for each marker. *_aligned: aligned sequences, for each marker. The prefix gives the software used for the alignment. *_trimmed: aligned, trimmed sequences for each marker. The prefix gives the software used to trim the alignment. <strong>3_1_Gamma105</strong>: Based on the Bact109 set of markers. <strong>3_2_Legio93</strong>: Based on the Bact109 set of markers. <strong>3_3_Bacteria134</strong>: Based on Gamma105 set and Bact109 set of markers. <strong>3_4_Bacteria93</strong>: Based on Bacteria134 (removed fast-evolving genomes). <strong>3_5_TB4SS_auto</strong>: Alignment of 12 genes of the T4BSS, automatically detected in all genomes. <strong>3_6_TB4SS_manual</strong>: Alignment of 25 genes of the T4BSS, manually curated by collinearity analysis.
DOI: 10.5281/zenodo.5544517
title: Salmonella, Shiga toxin-producing Escherichia coli O157:H7 and Listeria monocytogenes numbers during dry-aging of beef loins

description: This dataset contains bacterial count data and loin characteristics from an experimental study assessing the survival/growth of <em>Salmonella</em>, <em>Escherichia coli</em> O157:H7 and <em>Listeria monocytogenes</em> during dry-aging of beef loins, after artificial inoculation. Four different csv files are provided with tabular data. A detailed description of the data is provided in the readme file.
DOI: 10.5281/zenodo.5544516
title: Salmonella, Shiga toxin-producing Escherichia coli O157:H7 and Listeria monocytogenes numbers during dry-aging of beef loins

description: This dataset contains bacterial count data and loin characteristics from an experimental study assessing the survival/growth of <em>Salmonella</em>, <em>Escherichia coli</em> O157:H7 and <em>Listeria monocytogenes</em> during dry-aging of beef loins, after artificial inoculation. Four different csv files are provided with tabular data. A detailed description of the data is provided in the readme file.
DOI: 10.15468/y9sp86
title: A new species of Placospongia Gray, 1867 (Porifera, Demospongiae, Placospongiidae) and new record of P. ruetzleri van Soest, 2017 from Northeast, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mácola, Rosa, Menegola, Carla (2021): A new species of Placospongia Gray, 1867 (Porifera, Demospongiae, Placospongiidae) and new record of P. ruetzleri van Soest, 2017 from Northeast, Brazil. Zootaxa 5072 (1): 12-22, DOI: https://doi.org/10.11646/zootaxa.5072.1.2
DOI: 10.17043/oden-eager-2011-bathymetry-1
title: High-resolution bathymetry data from expedition EAGER, Arctic Ocean, 2011
DOI: 10.17043/oden-lomrog-2009-bathymetry-1
title: High-resolution bathymetry data from expedition LOMROG II, Lomonosov Ridge, Arctic Ocean, 2009
DOI: 10.17043/oden-sat-2008-2009-bathymetry-1
title: High-resolution bathymetry data from Sea acceptance test, Arctic Ocean, 2008 and 2009
DOI: 10.17043/oden-lomrog-2007-bathymetry-1
title: High-resolution bathymetry data from expedition LOMROG, Lomonosov Ridge, Arctic Ocean, 2007