cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4db42
title: Data from: Determining the advantages, costs, and trade-offs of a novel sodium channel mutation in the copepod Acartia hudsonica to paralytic shellfish toxins (PST)

description: The marine copepod Acartia hudsonica was shown to be adapted to
 dinoflagellate prey, Alexandrium fundyense, which produce paralytic
 shellfish toxins (PST). Adaptation to PSTs in other organisms is caused by
 a mutation in the sodium channel. Recently, a mutation in the sodium
 channel in A. hudsonica was found. In this study, we rigorously tested for
 advantages, costs, and trade-offs associated with the mutant isoform of A.
 hudsonica under toxic and non-toxic conditions. We combined fitness with
 wild-type: mutant isoform ratio measurements on the same individual
 copepod to test our hypotheses. All A. hudsonica copepods express both the
 wild-type and mutant sodium channel isoforms, but in different
 proportions; some individuals express predominantly mutant (PMI) or
 wild-type isoforms (PWI), while most individuals express relatively equal
 amounts of each (EI). There was no consistent pattern of improved
 performance as a function of toxin dose for egg production rate (EPR),
 ingestion rate (I), and gross growth efficiency (GGE) for individuals in
 the PMI group relative to individuals in the PWI expression group. Neither
 was there any evidence to indicate a fitness benefit to the mutant isoform
 at intermediate toxin doses. No clear advantage under toxic conditions was
 associated with the mutation. Using a mixed-diet approach, there was also
 no observed relationship between individual wild-type: mutant isoform
 ratios and among expression groups, on both toxic and non-toxic diets, for
 eggs produced over three days. Lastly, expression of the mutant isoform
 did not mitigate the negative effects of the toxin. That is, the
 reductions in EPR from a toxic to non-toxic diet for copepods were
 independent of expression groups. Overall, the results did not support our
 hypotheses; the mutant sodium channel isoform does not appear to be
 related to adaptation to PST in A. hudsonica. Other potential mechanisms
 responsible for the adaptation are discussed.
description: Finiguerra et al
 2015_Data_Sharing_PLoS ONEexcel file with
 data.
DOI: 10.5061/dryad.5b02c11
title: Data from: Biodiversity explain maximum variation in productivity under experimental warming, nitrogen addition and grazing in mountain grasslands

description: Anthropogenic global warming, nitrogen addition and over-grazing alter
 plant communities and threaten plant biodiversity, potentially impacting
 community productivity, especially in sensitive mountain grassland
 ecosystems. However, it still remains unknown whether the relationship
 between plant biodiversity and community productivity varies across
 different anthropogenic influences, and especially how changes in multiple
 biodiversity facets drive these impacts on productivity. Here we measured
 different facets of biodiversity including functional and phylogenetic
 richness and evenness in mountain grasslands along an environmental
 gradient of elevation in Yulong mountain of Yunnan Lijiang, China. We
 combined biodiversity metrics in a series of linear mixed-effect models to
 determine the most parsimonious predictors for productivity, which was
 estimated by aboveground biomass in community. We examined how
 biodiversity-productivity relationships were affected by experimental
 warming, nitrogen addition and livestock grazing. Species richness,
 phylogenetic diversity and single functional traits (leaf nitrogen
 content, mg/g), represented the most parsimonious combination in these
 scenarios, supporting a consensus that single biodiversity metrics alone
 cannot fully explain ecosystem function. The biodiversity-productivity
 relationships were positive and strong, but the effects of treatment on
 biodiversity-productivity relationship were negligible. Our findings
 indicate that the strong biodiversity-productivity relationships are
 consistent in various anthropogenic drivers of environmental change.
description: biodiversity_and_productivityOne spreadsheets are present in this file with treatments (TG, livestock-grazing; TWN, experimental warming and nitrogen addition; TW, experimental warming; TN, nitrogen addition; TC, control), elevation (2700 m, 3200 m, 3400 m), taxonomic biodiversity metrics (species richness, S; Shannon's evenness, H'), phylogenetic diversity (PD, the sum of branch length; IAC, imbalance of abundance at the clade; EAED, Equitability of abundance-weighted entropic measure of the distribution of evolutionary distinctiveness; MPD, mean pairwise distance; MNND, mean nearest-neighbor distance; MPDed, weighted mean pairwise distance; MNNDed, weighted mean nearest neighbour distance), multivariate functional diversity (FDis, functional distribution; FRic, functional richness; FEve, functional evenness; FDiv, functional divergence; RaoQ, quadratic entropy), single functional traits (Hmax, maximum plant height; LC, leaf carbon content; LN, leaf nitrogen content; LP, leaf phosphorus content; SLA, specific leaf area) ('f' and 's' represent interspecific and intraspecific functional traits respectively), soil resources (pH, C, soil carbon content, P, soil total phosphorus content, N, soil total nitrogen content), and biomass production.
DOI: 10.57760/sciencedb.35627
title: Low-lying states of 43S
title: 43S原子核低激发态信息

description: This dataset contains information on the low-lying excited states of the 43S nucleus, including comparisons between results from multireference covariant density functional theory (MR-CDFT) calculations and available experimental data. The relevant data comprise excitation-energy spectra, electromagnetic transition strengths, spectroscopic quadrupole moments, and electric dipole moments.
description: This dataset contains information on the low-lying excited states of the 43S nucleus, including comparisons between results from multireference covariant density functional theory (MR-CDFT) calculations and available experimental data. The relevant data comprise excitation-energy spectra, electromagnetic transition strengths, spectroscopic quadrupole moments, and electric dipole moments.
DOI: 10.5061/dryad.911fs2b9
title: Data from: Humidity affects genetic architecture of heat resistance in Drosophila melanogaster

description: Laboratory experiments on Drosophila have often demonstrated increased
 heritability for morphological and life-history traits under environmental
 stress. We used parent-offspring comparisons to examine the impact of
 humidity levels on the heritability of a physiological trait, resistance
 to heat, measured as knockdown time at constant temperature. Drosophila
 melanogaster were reared under standard non-stressful conditions and
 heat-shocked as adults at extreme high or low humidity. Mean knockdown
 time was decreased in the stressful dry environment but there was a
 significant sex-by-treatment interaction: at low humidity females were
 more heat resistant than males, whereas at high humidity the situation was
 reversed. Phenotypic variability of knockdown time was also lower in the
 dry environment. The magnitude of genetic correlation between the sexes at
 high humidity indicated genetic variation for sexual dimorphism in heat
 resistance. Heritability estimates based on one-parent – offspring
 regressions tended to be higher under desiccation stress and this could be
 explained by decreased environmental variance of heat resistance at low
 humidity. There was no indication that the additive genetic variance and
 evolvability of heat resistance differed between the environments. The
 pattern of heritability estimates suggests that populations of D.
 melanogaster may have a greater potential for evolving higher thermal
 tolerance under arid conditions.
description: Bubliy_et_al_2012
DOI: 10.57760/sciencedb.j00186.00966
title: Investigation of the isotopic dependence in the synthesis of superheavy nuclei with Plutonium and Curium targets
title: Investigation of the isotopic dependence in the synthesis of superheavy nuclei with Plutonium and Curium targets

description: In the synthesis of new superheavy nuclei, the various long half-lives of Pu and Cm isotopes render them promising target materials for fusion reactions. Investigation the isotopic dependence of actinide targets is im portant for selecting optimal reaction systems. Based on the dinuclear system model, the impact of the target isotope is investigated for the reactions 48Ca+239,240,242,244Pu. The reaction systems with the 242−248Cm tar gets and the 45Sc, 50Ti, 51V, 54Cr, 55Mn projectiles are investigated for the synthesis of new isotopes 284−290Ts, 289−293,295Og, 290−296119, 293−299120, 294−300121. The isotopic dependence of the Cm targets revealed an ascending trend of the maximal ER cross section coupled with an odd-even effect as the neutron number of the target increased, and the 247Cm target emerged as promising for future experiments. The optimal reac tions for producing new superheavy elements with Z = 119-121 are predicted to be the reactions 51V+245Cm, 54Cr+247Cm and 55Mn+247Cm with maximal ER cross sections of 144 fb, 0.877 fb, and 0.052 fb, respectively
description: In the synthesis of new superheavy nuclei, the various long half-lives of Pu and Cm isotopes render them promising target materials for fusion reactions. Investigation the isotopic dependence of actinide targets is im portant for selecting optimal reaction systems. Based on the dinuclear system model, the impact of the target isotope is investigated for the reactions 48Ca+239,240,242,244Pu. The reaction systems with the 242−248Cm tar gets and the 45Sc, 50Ti, 51V, 54Cr, 55Mn projectiles are investigated for the synthesis of new isotopes 284−290Ts, 289−293,295Og, 290−296119, 293−299120, 294−300121. The isotopic dependence of the Cm targets revealed an ascending trend of the maximal ER cross section coupled with an odd-even effect as the neutron number of the target increased, and the 247Cm target emerged as promising for future experiments. The optimal reac tions for producing new superheavy elements with Z = 119-121 are predicted to be the reactions 51V+245Cm, 54Cr+247Cm and 55Mn+247Cm with maximal ER cross sections of 144 fb, 0.877 fb, and 0.052 fb, respectively
DOI: 10.5061/dryad.9vk07
title: Data from: Does ecological specialization transcend scale? Habitat partitioning among individuals and species of Anolis lizards

description: Ecological specialization is common across all levels of biological
 organization, raising the question of whether the evolution of
 specialization at one scale in a taxon is linked to specialization at
 other scales. Anolis lizards have diversified repeatedly along axes of
 habitat use, but it remains unknown if this diversification into habitat
 use specialists is underlain by individual specialization. From repeated
 observations of individuals in a population of Anolis sagrei in Florida,
 we show that the extent of habitat use specialization among individuals is
 comparable to the extent of specialization in the same traits among ten
 sympatric Anolis habitat specialist species in Cuba. However, the adaptive
 correlations between habitat use and morphology commonly seen across
 species of Anolis were not observed across individuals in the sampled
 population. Our results therefore suggest that while patterns of
 ecological specialization can transcend scale, these parallels are the
 consequence of distinct ecological processes acting at microevolutionary
 and macroevolutionary scales.
description: KamathLososEvol_AnolissagreiPerchUsePerch height and diameter of individual lizards observed from 12 June to 1 August 2014, in Possum Creek Skate Park, Gainesville FL.KamathLososEvol_AnolissagreiSVLSex and Snout vent length of individual lizardsKamathLososEvol_AnolissagreiMorphAvgSex, snout vent length, and average lamellae count, toepad area, and limb length. Right and left measurements were averaged for limb length, toepad area, and lamella number on the forelimbs, as well as hindlimb length. We then took the mean of forelimb and hindlimb measurements, yielding one value per individual for limb length, toepad area, and lamella number.KamathLososEvol_AnolissagreiPerchDistAvailableCounts of available perches in five diameter classes, within 50cm of three or more randomly chosen locations for each individual lizard.KamathLososEvol_AnolisSpeciesPerchUseData from Rodriguez-Schettino et al. 2010 on perch height and diameter for 10 species belonging to seven habitat specialist types of anoles from Soroa, Cuba.
DOI: 10.57760/sciencedb.35881
title: Single-reference Bρ-defined isochronous mass spectrometry for mass measurements of exotic nuclei
title: Single-reference Bρ-defined isochronous mass spectrometry for mass measurements of exotic nuclei

description: This dataset contains partial magnetic field variation data from the isochronous mass measurement experiment with 58Ni as the primary beam conducted on the Lanzhou Heavy Ion Accelerator Facility (HIRFL), as well as the mass results from single-reference Bρ - IMS and conventional Bρ - IMS. 
description: This dataset contains partial magnetic field variation data from the isochronous mass measurement experiment with 58Ni as the primary beam conducted on the Lanzhou Heavy Ion Accelerator Facility (HIRFL), as well as the mass results from single-reference Bρ - IMS and conventional Bρ - IMS.
DOI: 10.5061/dryad.d28080r
title: Data from: A note on measuring natural selection on principal component scores

description: Measuring natural selection through the use of multiple regression has
 transformed our understanding of selection, although the methods used
 remain sensitive to the effects of multicollinearity due to highly
 correlated traits. While measuring selection on principal component scores
 is an apparent solution to this challenge, this approach has been heavily
 criticized due to difficulties in interpretation and relating PC axes back
 to the original traits. We describe and illustrate how to transform
 selection gradients for PC scores back into selection gradients for the
 original traits, addressing issues of multicollinearity and biological
 interpretation. In addition to reducing multicollinearity, we suggest that
 this method may have promise for measuring selection on high-dimensional
 data such as volatiles or gene expression traits. We demonstrate this
 approach with empirical data and examples from the literature,
 highlighting how selection estimates for PC scores can be interpreted
 while reducing the consequences of multicollinearity
description: Data for Chong et al.,
 Measuring selection on PC scoresExcel file containing:
 (1) Arabidopsis phenotypes, (2) Arabidopsis line means, (3) Calculations
 for solving equation 1 and estimating standard errors, for all data-sets
 and case-studies included in the paper.dryad.xlsx
DOI: 10.57760/sciencedb.35952
title: YOLOSpecNN: A novel γ-ray spectra full-energy peak automatic search and segmentation model inspired by YOLO
title: YOLOSpecNN: A novel γ-ray spectra full-energy peak automatic search and segmentation model inspired by YOLO

description: This dataset contains the relevant data involved in the paper.
description: This dataset contains the relevant data involved in the paper.
DOI: 10.5061/dryad.bh5v9
title: Data from: Evolution of a key trait greatly affects underground community assembly process through habitat adaptation in earthworms

description: Underground community assemblies have not been studied well compared with
 aboveground communities, despite their importance for our understanding of
 whole ecosystems. To investigate underground community assembly over
 evolutionary time scales, we examined terrestrial earthworm communities
 (Oligochaeta: Haplotaxida) in conserved mountainous primary forests in
 Japan as a model system. We collected 553 earthworms mostly from two
 dominant families, the Megascolecidae and the Lumbricidae, from 12 sites.
 We constructed a molecular taxonomic unit tree based on the analysis of
 three genes to examine the effects of a biogeographic factor (dispersal
 ability) and an evolutionary factor (habitat adaptation) on the earthworm
 community assembly process. The phylogenetic distance of the earthworm
 communities among sites was positively correlated with geographic distance
 when intraspecific variation was included, indicating that the divergence
 within species was affected by biogeographic factors. The community
 assembly process in the Megascolecidae has also been affected by
 environmental conditions in relation to an evolutionary relationship
 between habitat environment and intestinal caecum type, a trait closely
 related to habitat depth and diet, whereas that in the Lumbricidae has not
 been affected as such. Intestinal caecum type showed a pattern of niche
 conservatism in the Megascolecidae lineage. Our results suggest that
 investigating the evolution of a key trait related to life history can
 lead to the clear description of community assembly process over a long
 time scale and that the community assembly process can differ greatly
 among related lineages even though they live sympatrically.
description: Data for all collected
 earthworms
DOI: 10.57760/sciencedb.35988
title: Coincidence irradiation data for the four detectors
title: Coincidence irradiation data for the four detectors

description: This data is the irradiation coincidence data for the four detectors used in the work titled "Performance of high-resolution PET detectors based on long semi-monolithic scintillator slabs". Each datum represents the collected coincidence list-mode format events at each irradiation position of the four detectors used in this work.
description: This data is the irradiation coincidence data for the four detectors used in the work titled "Performance of high-resolution PET detectors based on long semi-monolithic scintillator slabs". Each datum represents the collected coincidence list-mode format events at each irradiation position of the four detectors used in this work.
DOI: 10.57760/sciencedb.j00186.00983
title: GPU-Accelerated Lagrangian Particle Dispersion Model Based on FLEXPART Framework: Dockerized Implementation and Research Validation Cases
title: GPU-Accelerated Lagrangian Particle Dispersion Model Based on FLEXPART Framework: Dockerized Implementation and Research Validation Cases

description: This project develops a fully GPU-accelerated Lagrangian particle dispersion model based on the FLEXPART atmospheric transport modeling framework, and constructs a high-performance, reproducible, and ready-to-use simulation environment through Docker containerization. It includes a set of standardized validation cases derived from published research, comprehensively verifying the model's ability to maintain physical accuracy while achieving significant improvements in computational performance.
description: This project develops a fully GPU-accelerated Lagrangian particle dispersion model based on the FLEXPART atmospheric transport modeling framework, and constructs a high-performance, reproducible, and ready-to-use simulation environment through Docker containerization. It includes a set of standardized validation cases derived from published research, comprehensively verifying the model's ability to maintain physical accuracy while achieving significant improvements in computational performance.
DOI: 10.5061/dryad.cd000qs
title: Data from: Fine-scale population differences in Atlantic cod reproductive success: a potential mechanism for ecological speciation in a marine fish

description: Successful resource-management and conservation outcomes ideally depend on
 matching the spatial scales of population demography, local adaptation,
 and threat mitigation. For marine fish with high dispersal capabilities,
 this remains a fundamental challenge. Based on daily parentage assignments
 of more than 4000 offspring, we document fine-scaled temporal differences
 in individual reproductive success for two spatially adjacent
 (&lt;10km) populations of a broadcast-spawning marine fish.
 Distinguished by differences in genetics and life history, Atlantic cod
 (Gadus morhua) from inner- and outer-fjord populations were allowed to
 compete for mating and reproductive opportunities. After accounting for
 phenotypic variability in several traits, reproductive success of
 outer-fjord cod was significantly lower than that of inner-fjord cod. This
 finding, given that genomically different cod ecotypes inhabit inner- and
 outer-fjord waters, raises the intriguing hypothesis that the populations
 might be diverging because of ecological speciation. Individual
 reproductive success, skewed within both sexes (more so among males), was
 positively affected by body size, which also influenced the timing of
 reproduction, larger individuals spawning later among females but earlier
 among males. Our work suggests that spatial mismatches between management
 and biological units exist in marine fishes and that studies of
 reproductive interactions between putative populations or ecotypes can
 provide an informative basis on which determination of the scale of local
 adaptation can be ascertained.
description: Reproductive success of
 Atlantic codThe file contains
 individual phenotypic data of male and female Atlantic cod that were used
 in an experiment that quantified individual reproductive success, using
 parentage analysis, between cod captured in inner and outer waters of a
 single fjord.DRYAD_Reproductive_Success.xlsx