cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc5gsds
title: CCDC 163165: Experimental Crystal Structure Determination

description: Related Article: J.Y.Lu, A.M.Babb|2002|Chem.Commun.||1340|doi:10.1039/b200213b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5gsft
title: CCDC 163166: Experimental Crystal Structure Determination

description: Related Article: J.Y.Lu, A.M.Babb|2002|Chem.Commun.||1340|doi:10.1039/b200213b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5p2fb
title: CCDC 169211: Experimental Crystal Structure Determination

description: Related Article: J.Y.Lu, A.M.Babb|2002|Chem.Commun.||1340|doi:10.1039/b200213b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ng4xfa
title: Occurrence Download

description: A dataset containing 2439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "VerbatimScientificName is Aquila chrysaetos"
 ]
}

 The dataset includes 2439 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068124-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2vr53
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sonneratia ovata, Fraxinus sogdiana, Populus usbekistanica, Elaeocarpus atropunctatus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 366 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068125-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5w7jm
title: Occurrence Download

description: A dataset containing 183 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Zea mays"
 ]
}

 The dataset includes 183 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068126-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30961958
title: WGBS related files

description: DNA methylation, as well as histone modifications, is an important regulatory mechanism for altered gene expressions. Our previous study hasshown that <i>B</i><i>ombyx mori</i>cytoplasmic polyhedrosis virus (BmCPV)infection could change the level of trimethylation of lysine 9 of histone 3 (H3K9me3)and acetylation of lysine 9 of histone 3 (H3K9ac), thus regulating the mRNAs expressions in the midgut of silkworm, <i>B</i><i>.</i><i>mori</i>. However, the correlation between genome-scale DNA methylome and transcriptome remains underexplored.<b> </b>In this study, whole genome bisulfite sequencing (WGBS) was performed on the midgut of BmCPV-infected silkworms at 48 h and 96 h post infection, and corresponding midguts of uninfected silkworms. And intersection genes were screened by correlation analysis between differentially methylated regions (DMR)-associated genes and differentially expressed genes (DEGs). Above analysis will contribute to further understanding how BmCPV regulate gene expression through epigenetic modification at the genome-wide level.In this item, DMR bed files and methylation calling related files are uploaded.
DOI: 10.6084/m9.figshare.30961958.v1
title: WGBS related files

description: DNA methylation, as well as histone modifications, is an important regulatory mechanism for altered gene expressions. Our previous study hasshown that <i>B</i><i>ombyx mori</i>cytoplasmic polyhedrosis virus (BmCPV)infection could change the level of trimethylation of lysine 9 of histone 3 (H3K9me3)and acetylation of lysine 9 of histone 3 (H3K9ac), thus regulating the mRNAs expressions in the midgut of silkworm, <i>B</i><i>.</i><i>mori</i>. However, the correlation between genome-scale DNA methylome and transcriptome remains underexplored.<b> </b>In this study, whole genome bisulfite sequencing (WGBS) was performed on the midgut of BmCPV-infected silkworms at 48 h and 96 h post infection, and corresponding midguts of uninfected silkworms. And intersection genes were screened by correlation analysis between differentially methylated regions (DMR)-associated genes and differentially expressed genes (DEGs). Above analysis will contribute to further understanding how BmCPV regulate gene expression through epigenetic modification at the genome-wide level.In this item, DMR bed files and methylation calling related files are uploaded.
DOI: 10.15468/dl.czfksr
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 2cd829bb-b713-433d-99cf-64bef11e5b3e",
 "TaxonKey is one of (Calamodontophis, Dryophylax, Gomesophis, Mesotes, Ptychophis, Tachymenis, Thamnodynastes, Tomodon, Pseudotomodon)"
 ]
}

 The dataset includes 72 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068128-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18080198
title: Data compression for bridge resilience control

description: The code compression package includes code for domain knowledge based data compression and temporal data compression, as well as source data files (in EXCEL format). The neural networkX and neural networkY in the compressed package are data compression source codes based on domain knowledge. Timeseries stack compression is the source code for compressing time-series data. Other files are comparative algorithms for compressing time-series data. The running environment of this code is Python 3.8, and the main libraries used for code execution include pandas, numpy, matplotlib, etc.
DOI: 10.15468/dl.gx3ccn
title: Occurrence Download

description: A dataset containing 58242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-55.46738 -1.46775,-49.80906 -1.46775,-49.80906 4.37067,-55.46738 4.37067,-55.46738 -1.46775))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 58242 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068120-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3up86v
title: Occurrence Download

description: A dataset containing 479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Columnea spathulata"
 ]
}

 The dataset includes 479 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068129-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mrhvb
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "VerbatimScientificName is Aquila heliaca"
 ]
}

 The dataset includes 441 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068130-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xm74gx
title: Occurrence Download

description: A dataset containing 2867513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Odonata"
 ]
}

 The dataset includes 2867513 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068127-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/mcke-mj84
title: "Anonymized Schema Metadata and Experimental Logs for Privacy-Preserving RAG in Semiconductor Manufacturing"

description: "This dataset is designed to support research on privacy-preserving schema retrieval for Retrieval-Augmented Generation (RAG) under air-gapped environments and strict data sovereignty constraints. It contains only schema-level metadata and relational topology information, without any row-level instance data.Specifically, the dataset comprises 52 relational tables with more than 1,300 columns and a set of 167 domain-specific natural language queries. Answering these queries typically requires multi-hop reasoning involving joins over 3\u20136 tables. To protect sensitive industrial information, all identifiers are anonymized using salted MD5 hashing, while foreign-key relationships and structural connectivity are preserved.This design enables the study of topology-aware retrieval and uncertainty-guided optimization in highly restricted industrial settings, without exposing proprietary semantics or violating confidentiality requirements. "
DOI: 10.6084/m9.figshare.30962138
title: <b>Long-term manure drives divergent carbon stabilization: Enzymic latch-mediated POC in paddies and MEMS-associated MOC in uplands</b>

description: Soil organic carbon (SOC) stabilization is governed by land-use-specific biogeochemical processes, but the divergent roles of plant- vs. microbial-derived carbon in SOC fractions (particulate organic carbon, POC; mineral-associated organic carbon, MOC) remain unclear under long-term fertilization. Here, we investigated two over-35-year field experiments in red soil of China, comparing paddy (anaerobic) and upland (aerobic) systems under four fertilization regimes: no fertilizer (CK), mineral nitrogen (N), mineral NPK, and NPK plus manure (NPKM). We quantified plant- and microbial-derived carbon using biomarkers (lignin phenols for plant residues; amino sugars for microbial necromass) and identified key drivers via random forest modeling. Long-term NPKM significantly increased SOC in both systems, but through contrasting stabilization pathways.. In paddy, SOC gains under NPKM were dominated by POC (62% of total SOC increment), with plant-derived carbon (2.90 g kg⁻¹) being 3.1-fold higher than microbial-derived carbon (0.94 g kg⁻¹). This was primarily driven by β-glucosidase activity (relative importance: 37%), consistent with the "enzymic latch" mechanism that preserves plant residues under anaerobic conditions. In upland, SOC gains under NPKM were dominated by MOC (71% of total SOC increment), where microbial-derived carbon (1.91 g kg⁻¹) exceeded plant-derived carbon (1.14 g kg⁻¹). The synergy between total nitrogen (TN, relative importance: 42%) and leucine aminopeptidase (LAP, relative importance: 28%) accelerated microbial turnover and necromass stabilization, supporting the Microbial Efficiency–Matrix Stabilization framework. Our findings demonstrate that manure-based fertilization is the key to enhancing targeted SOC fractions: it sustains the "enzymic latch" for plant-derived POC accumulation in paddy and strengthens TN-LAP synergy for microbial-derived MOC accrual in upland. These results highlight the pivotal role of organic manure in tailoring fertilization strategies to enhance SOC sequestration in agricultural ecosystems.
DOI: 10.6084/m9.figshare.30962138.v1
title: <b>Long-term manure drives divergent carbon stabilization: Enzymic latch-mediated POC in paddies and MEMS-associated MOC in uplands</b>

description: Soil organic carbon (SOC) stabilization is governed by land-use-specific biogeochemical processes, but the divergent roles of plant- vs. microbial-derived carbon in SOC fractions (particulate organic carbon, POC; mineral-associated organic carbon, MOC) remain unclear under long-term fertilization. Here, we investigated two over-35-year field experiments in red soil of China, comparing paddy (anaerobic) and upland (aerobic) systems under four fertilization regimes: no fertilizer (CK), mineral nitrogen (N), mineral NPK, and NPK plus manure (NPKM). We quantified plant- and microbial-derived carbon using biomarkers (lignin phenols for plant residues; amino sugars for microbial necromass) and identified key drivers via random forest modeling. Long-term NPKM significantly increased SOC in both systems, but through contrasting stabilization pathways.. In paddy, SOC gains under NPKM were dominated by POC (62% of total SOC increment), with plant-derived carbon (2.90 g kg⁻¹) being 3.1-fold higher than microbial-derived carbon (0.94 g kg⁻¹). This was primarily driven by β-glucosidase activity (relative importance: 37%), consistent with the "enzymic latch" mechanism that preserves plant residues under anaerobic conditions. In upland, SOC gains under NPKM were dominated by MOC (71% of total SOC increment), where microbial-derived carbon (1.91 g kg⁻¹) exceeded plant-derived carbon (1.14 g kg⁻¹). The synergy between total nitrogen (TN, relative importance: 42%) and leucine aminopeptidase (LAP, relative importance: 28%) accelerated microbial turnover and necromass stabilization, supporting the Microbial Efficiency–Matrix Stabilization framework. Our findings demonstrate that manure-based fertilization is the key to enhancing targeted SOC fractions: it sustains the "enzymic latch" for plant-derived POC accumulation in paddy and strengthens TN-LAP synergy for microbial-derived MOC accrual in upland. These results highlight the pivotal role of organic manure in tailoring fertilization strategies to enhance SOC sequestration in agricultural ecosystems.
DOI: 10.21227/j19a-g428
title: "ThyroidMTD (Thyroid Multi-Task Dataset) "

description: "ThyroidMTD contains 1088 nodules from 938 patients, retrospectively collected at Zhejiang Cancer Hospital from August 2018 to February 2021. All images were acquired using ultrasound equipment from GE (Logiq E9, Milwaukee, WI, USA), Philips (IU22, Eindhoven, The Netherlands), and Siemens (S3000, Munich, Germany) with 5-13 MHz linear probes. Nodule boundaries were manually delineated by clinicians with five years of experience, and all labels were confirmed through pathological examination. Patients with multiple malignant thyroid nodules and metastatic lymph nodes were excluded during quality control due to uncertainty in identifying the specific nodule containing metastatic cells. Ethics approval was obtained from both institutional review boards (Zhejiang Cancer Hospital: IRB-2020-287; Shaoxing People\u2019s Hospital: IEC-K-AF-071-1.0), with informed consent waived due to the retrospective nature of the study."
DOI: 10.57841/casdc.0006719
title: 路侧目标检测数据集
DOI: 10.15468/dl.xuqdfj
title: Occurrence Download

description: A dataset containing 731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-5000.0",
 "TaxonKey is Paris polyphylla"
 ]
}

 The dataset includes 731 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068131-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xe2d6y
title: Occurrence Download

description: A dataset containing 50074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyps himalayensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 50074 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068123-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0006720
title: 路侧车牌识别数据集
DOI: 10.21227/5zej-9232
title: "jeon_dataset"

description: "LEVIR-CD are publicly available datasets for building change detection. They consist of pairs of high-resolution bi-temporal aerial or satellite images captured over urban areas, along with pixel-level annotations indicating building changes. The datasets include diverse urban scenes with varying building densities, structural layouts, and change patterns, providing representative samples of urban building change scenarios."
DOI: 10.15468/dl.7fshp7
title: Occurrence Download

description: A dataset containing 876 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "VerbatimScientificName is Aquila nipalensis"
 ]
}

 The dataset includes 876 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068133-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18080213
title: TCM-LightGBM-Meniscal (Anonymous)
DOI: 10.5281/zenodo.18080214
title: TCM-LightGBM-Meniscal (Anonymous)
DOI: 10.15468/dl.p88k9a
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "VerbatimScientificName is Arborophila ardens"
 ]
}

 The dataset includes 539 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068134-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wh5gmn
title: Occurrence Download

description: A dataset containing 333 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (Chinese Taipei, China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "VerbatimScientificName is Arborophila rufipectus"
 ]
}

 The dataset includes 333 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068135-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14326885
title: ONCO-360 | DATASUS | INCA | CNES | SIOPS
DOI: 10.6084/m9.figshare.30962081
title: SMILES-ADR Dataset: Chemical compounds with annotated adverse drug reactions

description: This dataset contains chemical compounds represented as SMILES (Simplified Molecular Input Line Entry System) strings paired with annotated Adverse Drug Reactions (ADRs). Each compound is labeled with specific ADRs including scleral hyperaemia, skin exfoliation, osteoarthritis, arrhythmia supraventricular, anaphylactoid syndrome of pregnancy, and mediastinal disorder.<br>**Dataset Structure:**- `smiles`: SMILES representation of chemical compounds- `adr`: Specific adverse drug reaction annotation- `label`: Binary or categorical label (0/1 in provided sample)<br>**Potential Applications:**- Machine learning for ADR prediction- Cheminformatics research- Drug safety assessment- Pharmacovigilance studies<br>**Related Fields:** Computational chemistry, toxicology, pharmacoepidemiology, drug discovery
DOI: 10.6084/m9.figshare.30962081.v1
title: SMILES-ADR Dataset: Chemical compounds with annotated adverse drug reactions

description: This dataset contains chemical compounds represented as SMILES (Simplified Molecular Input Line Entry System) strings paired with annotated Adverse Drug Reactions (ADRs). Each compound is labeled with specific ADRs including scleral hyperaemia, skin exfoliation, osteoarthritis, arrhythmia supraventricular, anaphylactoid syndrome of pregnancy, and mediastinal disorder.<br>**Dataset Structure:**- `smiles`: SMILES representation of chemical compounds- `adr`: Specific adverse drug reaction annotation- `label`: Binary or categorical label (0/1 in provided sample)<br>**Potential Applications:**- Machine learning for ADR prediction- Cheminformatics research- Drug safety assessment- Pharmacovigilance studies<br>**Related Fields:** Computational chemistry, toxicology, pharmacoepidemiology, drug discovery
DOI: 10.5281/zenodo.17188940
title: MSP library of Vibrio parahaemolyticus isolates from oysters (Texas, Louisiana, Massachusetts)

description: A custom Main Spectral Profile (MSP) library (.btmsp file) of 70 Vibrio parahaemolyticus strains isolated from oysters collected in Galveston Bay (Texas, USA), aquaculture plots in Massachusetts, and seafood markets in Texas and Louisiana.

This dataset is provided as supplementary material to the manuscript: Resolution of MALDI-TOF MS Compared to Whole Genome Sequencing for the Identification of Vibrio parahaemolyticus Strains Isolated from Oysters by Tetyana King, Mayela Pedrueza, Maliha Rahman, Bonnie Oh, and Michael G. LaMontagne.

The MSP library can be used to improve species- and strain-level identification of V. parahaemolyticus by MALDI-TOF MS and as a reference for comparative studies involving genomic and proteomic approaches.

In addition to the MSP library, raw MALDI-TOF MS spectra of V. parahaemolyticus used for species identification have also been deposited.
DOI: 10.5281/zenodo.18080264
title: MSP library of Vibrio parahaemolyticus isolates from oysters (Texas, Louisiana, Massachusetts)

description: A custom Main Spectral Profile (MSP) library (.btmsp file) of 70 Vibrio parahaemolyticus strains isolated from oysters collected in Galveston Bay (Texas, USA), aquaculture plots in Massachusetts, and seafood markets in Texas and Louisiana.

This dataset is provided as supplementary material to the manuscript: Resolution of MALDI-TOF MS Compared to Whole Genome Sequencing for the Identification of Vibrio parahaemolyticus Strains Isolated from Oysters by Tetyana King, Mayela Pedrueza, Maliha Rahman, Bonnie Oh, and Michael G. LaMontagne.

The MSP library can be used to improve species- and strain-level identification of V. parahaemolyticus by MALDI-TOF MS and as a reference for comparative studies involving genomic and proteomic approaches.

In addition to the MSP library, raw MALDI-TOF MS spectra of V. parahaemolyticus used for species identification have also been deposited.
DOI: 10.34740/kaggle/dsv/14326504
title: Student Depression & Lifestyle (100k Data)