cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fufgam
title: Occurrence Download

description: A dataset containing 5085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia",
 "Country is Trinidad and Tobago",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5085 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024814-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4p53m
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Solomon Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024815-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jk4dex
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Eritrea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024816-250717081556266/datasets/export for details.
DOI: 10.15468/dl.e4vfkp
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024818-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64uwx7
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Eswatini",
 "HasCoordinate is true"
 ]
}

 The dataset includes 141 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024819-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f88z3y
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monochoria hastata",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024820-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15383914
title: Field data, analysis and model software and model inputs for "Measurements and modeling of aeolian sand transport on dynamic cobble berm revetments"

description: This repository includes moisture content, wind, sand transport and topography measurements collected in January of 2024 in Westport, WA, USA. It also includes the AeoLiS software (version 3.0.0.rc1, de Vries et al., 2023) including the changes described in Section 3.2 of the paper and the input files which were used for the aeolian sediment transport simulations in this research. The Python code used for the analysis of the measured data and modeling results and the generation of figures as presented in the paper is also preserved in this repository. The AeoLiS software is available under a GPL-3.0 license and is developed openly on Github (https://github.com/openearth/aeolis-python). 

Associated with:

van IJzendoorn, Christa and Wengrove, Meagan E. and Ruggiero, Peter and Bond, Hailey G., Measurements and Modeling of Aeolian Sand Transport on Dynamic Cobble Berm Revetments. Available at SSRN: https://ssrn.com/abstract=5253286 or http://dx.doi.org/10.2139/ssrn.5253286
DOI: 10.5281/zenodo.15383915
title: Field data, analysis and model software and model inputs for "Measurements and modeling of aeolian sand transport on dynamic cobble berm revetments"

description: This repository includes moisture content, wind, sand transport and topography measurements collected in January of 2024 in Westport, WA, USA. It also includes the AeoLiS software (version 3.0.0.rc1, de Vries et al., 2023) including the changes described in Section 3.2 of the paper and the input files which were used for the aeolian sediment transport simulations in this research. The Python code used for the analysis of the measured data and modeling results and the generation of figures as presented in the paper is also preserved in this repository. The AeoLiS software is available under a GPL-3.0 license and is developed openly on Github (https://github.com/openearth/aeolis-python). 

Associated with:

van IJzendoorn, Christa and Wengrove, Meagan E. and Ruggiero, Peter and Bond, Hailey G., Measurements and Modeling of Aeolian Sand Transport on Dynamic Cobble Berm Revetments. Available at SSRN: https://ssrn.com/abstract=5253286 or http://dx.doi.org/10.2139/ssrn.5253286
DOI: 10.15468/dl.wqr9xk
title: Occurrence Download

description: A dataset containing 32937 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32937 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024821-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n457d3
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Saint Kitts and Nevis",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024823-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5sg5pg
title: Occurrence Download

description: A dataset containing 724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enterolobium contortisiliquum",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 724 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024825-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ycdybu
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Ethiopia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 227 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024824-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykwy4a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Typha latifolia",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024828-250717081556266/datasets/export for details.
DOI: 10.15468/dl.4haxj3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024827-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5nygp7
title: Occurrence Download

description: A dataset containing 4911 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asparagus africanus"
 ]
}

 The dataset includes 4911 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024826-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.haaf6y
title: Occurrence Download

description: A dataset containing 134222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 134222 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024803-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pkcyu4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024829-250717081556266/datasets/export for details.
DOI: 10.15468/dl.45q6j9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Typha latifolia",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024830-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw9c4x
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Typha latifolia",
 "Country is Senegal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024831-250717081556266/datasets/export for details.
DOI: 10.15468/dl.cnme8p
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024833-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wezdhx
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Ghana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024834-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwuad3
title: Occurrence Download

description: A dataset containing 961 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucocoryne ixioides"
 ]
}

 The dataset includes 961 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024835-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25kt3y
title: Occurrence Download

description: A dataset containing 411 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asparagus trichophyllus"
 ]
}

 The dataset includes 411 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024836-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nx7pp9
title: Occurrence Download

description: A dataset containing 363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Greece",
 "HasCoordinate is true"
 ]
}

 The dataset includes 363 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024838-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x33jsv
title: Occurrence Download

description: A dataset containing 4515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4515 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024837-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggwpzf
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024842-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x69cwg
title: Occurrence Download

description: A dataset containing 1542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Inga vera",
 "HasCoordinate is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1542 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024840-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jsyttb
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cassia siamea",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024839-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.932rfe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Guyana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024850-250717081556266/datasets/export for details.
DOI: 10.15468/dl.w2gxu8
title: Occurrence Download

description: A dataset containing 1596 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asparagus maritimus"
 ]
}

 The dataset includes 1596 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024844-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc3xqd
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is Uruguay",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024851-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqensx
title: Occurrence Download

description: A dataset containing 7649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Passer domesticus",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7649 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024847-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15644669
title: Delete: Incorrect upload

description: - Processed data products:



ASV_sequences.fasta: fasta sequences of all ASVs found in samples

ASV_table_Decontam_TrueSamples.rds: phyloseq object containing ASVs and their abundances in decontaminated, real (i.e. non-control) samples

asv_table.txt: raw data containing the ASVs and their abundances (before decontamination and subsetting) in samples

rooted_tree.nwk: phylogenetic tree of present taxa

sample_data.txt: mapping metadata to all samples (controls and non-controls)

taxonomy_tab.tsv: matching ASVs to their assigned taxonomy


- Supplementary materials
DOI: 10.15468/dl.gegh45
title: Occurrence Download

description: A dataset containing 722 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phycella cyrtanthoides"
 ]
}

 The dataset includes 722 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024849-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6u65yu
title: Occurrence Download

description: A dataset containing 16808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mus musculus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16808 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024843-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8yfvj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ambystoma gracile)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024858-250717081556266/datasets/export for details.
DOI: 10.15468/dl.6tjnt9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paraserianthes falcataria",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024854-250717081556266/datasets/export for details.
DOI: 10.15468/dl.xygxbx
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paraserianthes falcataria",
 "Country is Indonesia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024853-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mnuft
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ambystoma gracile)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024857-250717081556266/datasets/export for details.
DOI: 10.15468/dl.6xu49m
title: Occurrence Download

description: A dataset containing 4309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Ambystoma gracile)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 4309 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024856-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvrhpt
title: Occurrence Download

description: A dataset containing 1170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asparagus oligoclonos"
 ]
}

 The dataset includes 1170 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024859-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3x674
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melia azedarach",
 "Country is Haiti",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024860-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.