cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19930333.v1
title: Additional file 1 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 1: Table S1. Differential gene expression of different cell types in first clustering.
DOI: 10.6084/m9.figshare.19930339.v1
title: Additional file 21 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 21: Table S10. Cell cycle phase-specific genes.
DOI: 10.6084/m9.figshare.19930339
title: Additional file 21 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 21: Table S10. Cell cycle phase-specific genes.
DOI: 10.6084/m9.figshare.19930345
title: Additional file 3 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 3: Table S2. Differential gene expression of epithelial secretory cells (ESC) subtypes in sub-clustering.
DOI: 10.6084/m9.figshare.19930345.v1
title: Additional file 3 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 3: Table S2. Differential gene expression of epithelial secretory cells (ESC) subtypes in sub-clustering.
DOI: 10.6084/m9.figshare.19930351
title: Additional file 5 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 5: Table S3. GO enrichment of enteroendocrine cell (EEC)-1.
DOI: 10.6084/m9.figshare.19930351.v1
title: Additional file 5 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 5: Table S3. GO enrichment of enteroendocrine cell (EEC)-1.
DOI: 10.6084/m9.figshare.19930354
title: Additional file 6 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 6: Table S4. GO enrichment of genes related with pseudotime analysis in Fig. 2f.
DOI: 10.6084/m9.figshare.19930354.v1
title: Additional file 6 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 6: Table S4. GO enrichment of genes related with pseudotime analysis in Fig. 2f.
DOI: 10.6084/m9.figshare.19930357
title: Additional file 7 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 7: Table S5. Differential gene expression of B cell subtypes in sub-clustering.
DOI: 10.6084/m9.figshare.19930357.v1
title: Additional file 7 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 7: Table S5. Differential gene expression of B cell subtypes in sub-clustering.
DOI: 10.6084/m9.figshare.19930363
title: Additional file 9 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 9: Table S6. GO enrichment of genes related with pseudotime analysis in Additional file 8: Fig. S3c.
DOI: 10.6084/m9.figshare.19930363.v1
title: Additional file 9 of Ileum tissue single-cell mRNA sequencing elucidates the cellular architecture of pathophysiological changes associated with weaning in piglets

description: Additional file 9: Table S6. GO enrichment of genes related with pseudotime analysis in Additional file 8: Fig. S3c.
DOI: 10.6084/m9.figshare.19930398
title: Additional file 1 of Behavioural responses of Konik Polski horses to natural, familiar sound of thunderstorm, and unfamiliar similar-sounding sounds of volcanic eruption and sea storms

description: Additional file 1.
DOI: 10.6084/m9.figshare.19930398.v1
title: Additional file 1 of Behavioural responses of Konik Polski horses to natural, familiar sound of thunderstorm, and unfamiliar similar-sounding sounds of volcanic eruption and sea storms

description: Additional file 1.
DOI: 10.6084/m9.figshare.19930416
title: Additional file 3 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 3: Table S1: Hi-C library statistics.
DOI: 10.6084/m9.figshare.19930416.v1
title: Additional file 3 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 3: Table S1: Hi-C library statistics.
DOI: 10.6084/m9.figshare.19930419
title: Additional file 4 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 4: Table S2: Hi-C compartments and gene ontology information relating to Fig. 2B-C.
DOI: 10.6084/m9.figshare.19930419.v1
title: Additional file 4 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 4: Table S2: Hi-C compartments and gene ontology information relating to Fig. 2B-C.
DOI: 10.6084/m9.figshare.19930422
title: Additional file 5 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 5: Table S3: Changes in Hi-C compartments across cancer cell lines. Gene ontology information of epithelial genes in stable and dynamic compartments, relating to Fig. 2D.
DOI: 10.6084/m9.figshare.19930425
title: Additional file 6 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 6: Table S4: Changes in Hi-C compartments across cancer cell lines. Gene ontology information of mesenchymal genes in stable and dynamic compartments, relating to Fig. 2D.
DOI: 10.6084/m9.figshare.19930422.v1
title: Additional file 5 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 5: Table S3: Changes in Hi-C compartments across cancer cell lines. Gene ontology information of epithelial genes in stable and dynamic compartments, relating to Fig. 2D.
DOI: 10.6084/m9.figshare.19930425.v1
title: Additional file 6 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 6: Table S4: Changes in Hi-C compartments across cancer cell lines. Gene ontology information of mesenchymal genes in stable and dynamic compartments, relating to Fig. 2D.
DOI: 10.6084/m9.figshare.19930431
title: Additional file 8 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 8. Uncropped images, relating to Fig. S2.
DOI: 10.6084/m9.figshare.19930428.v1
title: Additional file 7 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 7: Table S5: Pearson correlation analysis, relating to Fig. 3F and Fig. S4D.
DOI: 10.6084/m9.figshare.19930431.v1
title: Additional file 8 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 8. Uncropped images, relating to Fig. S2.
DOI: 10.6084/m9.figshare.19930434.v1
title: Additional file 9 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 9. DEPArray™ NxT system generated reports for single-cell isolation. The reports contain the parameters used for immunofluorescence and the images of single cells captured by the system.
DOI: 10.6084/m9.figshare.19930428
title: Additional file 7 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 7: Table S5: Pearson correlation analysis, relating to Fig. 3F and Fig. S4D.
DOI: 10.6084/m9.figshare.19930434
title: Additional file 9 of 3D genome organization in the epithelial-mesenchymal transition spectrum

description: Additional file 9. DEPArray™ NxT system generated reports for single-cell isolation. The reports contain the parameters used for immunofluorescence and the images of single cells captured by the system.
DOI: 10.6084/m9.figshare.19930488
title: Additional file 1 of Toe grip force of the dominant foot is associated with fall risk in community-dwelling older adults: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.19930488.v1
title: Additional file 1 of Toe grip force of the dominant foot is associated with fall risk in community-dwelling older adults: a cross-sectional study

description: Additional file 1.
DOI: 10.6084/m9.figshare.19930512
title: Additional file 2 of Identifying tumor cells at the single-cell level using machine learning

description: Additional file 2. Tables with data description and results.
DOI: 10.6084/m9.figshare.19930512.v1
title: Additional file 2 of Identifying tumor cells at the single-cell level using machine learning

description: Additional file 2. Tables with data description and results.
DOI: 10.6084/m9.figshare.19930515.v1
title: Additional file 3 of Identifying tumor cells at the single-cell level using machine learning

description: Additional file 3. Results of statistical analysis.
DOI: 10.6084/m9.figshare.19930515
title: Additional file 3 of Identifying tumor cells at the single-cell level using machine learning

description: Additional file 3. Results of statistical analysis.
DOI: 10.6084/m9.figshare.19930555
title: Additional file 1 of The mixed phylogenetic origin of northern pike (Esox lucius Linnaeus 1758) populations in the Middle Danubian drainage

description: Additional file 1: Supplementary table 1. General, geographic, genetic, phenotype and morphometric data of the analysed 88 pike individuals. Name of waterbody and sample site, their coordinates, subdrainage, country of origin, altitude above seal level (Alt. asl). Codes and colors of haplotypes (blue: Northern, red: Circumpolar, green: Southern) correspond with Fig 1-2-3, and Table 1. The collectors’ inicials are identical with the authors’ initials of the ms. Sites which Esox population is charecterised by mixed phylogenetic origin are emphasized with bold letter type.
DOI: 10.6084/m9.figshare.19930555.v1
title: Additional file 1 of The mixed phylogenetic origin of northern pike (Esox lucius Linnaeus 1758) populations in the Middle Danubian drainage

description: Additional file 1: Supplementary table 1. General, geographic, genetic, phenotype and morphometric data of the analysed 88 pike individuals. Name of waterbody and sample site, their coordinates, subdrainage, country of origin, altitude above seal level (Alt. asl). Codes and colors of haplotypes (blue: Northern, red: Circumpolar, green: Southern) correspond with Fig 1-2-3, and Table 1. The collectors’ inicials are identical with the authors’ initials of the ms. Sites which Esox population is charecterised by mixed phylogenetic origin are emphasized with bold letter type.
DOI: 10.5281/zenodo.7395605
title: Climate and geology overwrite land use effects on soil organic nitrogen cycling on a continental scale

description: <strong>Abstract.</strong> Soil fertility and plant productivity are globally constrained by N availability. Proteins are the largest N reservoir in soils and the cleavage of proteins into small peptides and amino acids has been shown to be the rate limiting step in the terrestrial N cycle. However, we are still lacking a profound understanding of the environmental controls of this process. Here we show that integrated effects of climate and soil geochemistry drive protein cleavage across large scales. We measured gross protein depolymerization rates in mineral and organic soils sampled across a 4000-km-long European transect covering a wide range of climates, geologies and land uses. Based on structural equation models we identified that soil organic N cycling was strongly controlled by substrate availability, e.g. by soil protein content. Soil geochemistry was a secondary predictor, by controlling protein stabilization mechanisms and protein availability. Precipitation was identified as the main climatic control on protein depolymerization, by affecting soil weathering and soil organic matter accumulation. In contrast, land use was a poor predictor of protein depolymerization. Our results highlight the need to consider geology and precipitation effects on soil geochemistry when estimating and predicting soil N cycling at large scales.
DOI: 10.6084/m9.figshare.21641615
title: Supplementary Material for: Successful Dasatinib Treatment of Epidermal Growth Factor Receptor Mutant Lung Adenocarcinoma and BCR-ABL1-Positive Chronic Myeloid Leukemia: A Case Report

description: Dasatinib, a second-generation BCR-ABL1 tyrosine kinase inhibitor (TKI), inhibits multiple kinase pathways and is a promising anti-tumor agent for various solid tumors, including lung cancer. Herein, we report a patient with coexisting Epidermal Growth Factor Receptor (EGFR)-mutant lung adenocarcinoma and BCR-ABL1-positive chronic myeloid leukemia (CML). The patient received afatinib for a postoperative intrapulmonary recurrence of lung adenocarcinoma harboring EGFR exon 19 deletion. Afatinib achieved tumor reduction; however, dose reduction was required because of Grade 2 diarrhea and skin toxicity. The reduced dose maintained a partial response. Thirty-one months after introduction of afatinib, he was diagnosed as having BCR-ABL1-positive CML and nilotinib was added to his treatment regimen. However, the combination of nilotinib and afatinib aggravated his diarrhea, prompting discontinuation of afatinib. Because nilotinib does not have sufficient anti-tumor efficacy for CML, dasatinib was substituted for nilotinib. Thirty-five months after introduction of dasatinib, bosutinib was substituted for dasatinib because of uncontrollable pleural effusions. Dasatinib achieved 31- and 35-month progression-free survivals for CML and EGFR-mutant lung adenocarcinoma, respectively. Dasatinib is thus a therapeutic option for coexisting EGFR-mutant lung adenocarcinoma and BCR-ABL1-positive CML when TKI combination therapy is contraindicated by severe adverse events. In our patient, adding nilotinib to afatinib led to severe diarrhea. When administering TKI combination therapy, drug–drug interactions should be considered.
DOI: 10.17188/1205802
title: Materials Data on BaSnO3 by Materials Project

description: BaSnO3 is (Cubic) Perovskite structured and crystallizes in the cubic Pm-3m space group. The structure is three-dimensional. Ba2+ is bonded to twelve equivalent O2- atoms to form BaO12 cuboctahedra that share corners with twelve equivalent BaO12 cuboctahedra, faces with six equivalent BaO12 cuboctahedra, and faces with eight equivalent SnO6 octahedra. All Ba–O bond lengths are 2.96 Å. Sn4+ is bonded to six equivalent O2- atoms to form SnO6 octahedra that share corners with six equivalent SnO6 octahedra and faces with eight equivalent BaO12 cuboctahedra. The corner-sharing octahedral tilt angles are 0°. All Sn–O bond lengths are 2.09 Å. O2- is bonded in a distorted linear geometry to four equivalent Ba2+ and two equivalent Sn4+ atoms.
DOI: 10.17188/1207766
title: Materials Data on CaTiO3 by Materials Project

description: CaTiO3 is Orthorhombic Perovskite structured and crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. Ca2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Ca–O bond distances ranging from 2.36–2.69 Å. Ti4+ is bonded to six O2- atoms to form corner-sharing TiO6 octahedra. The corner-sharing octahedral tilt angles are 26°. There is two shorter (1.97 Å) and four longer (1.98 Å) Ti–O bond length. There are two inequivalent O2- sites. In the first O2- site, O2- is bonded in a 4-coordinate geometry to two equivalent Ca2+ and two equivalent Ti4+ atoms. In the second O2- site, O2- is bonded in a 5-coordinate geometry to three equivalent Ca2+ and two equivalent Ti4+ atoms.
DOI: 10.17188/1208154
title: Materials Data on CaSnO3 by Materials Project

description: CaSnO3 is Orthorhombic Perovskite structured and crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. Ca2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Ca–O bond distances ranging from 2.34–2.85 Å. Sn4+ is bonded to six O2- atoms to form corner-sharing SnO6 octahedra. The corner-sharing octahedra tilt angles range from 34–36°. There are two shorter (2.09 Å) and four longer (2.10 Å) Sn–O bond lengths. There are two inequivalent O2- sites. In the first O2- site, O2- is bonded in a 5-coordinate geometry to three equivalent Ca2+ and two equivalent Sn4+ atoms. In the second O2- site, O2- is bonded to two equivalent Ca2+ and two equivalent Sn4+ atoms to form distorted corner-sharing OCa2Sn2 tetrahedra.
DOI: 10.17188/1208258
title: Materials Data on CaZrO3 by Materials Project

description: CaZrO3 is Orthorhombic Perovskite structured and crystallizes in the orthorhombic Pnma space group. The structure is three-dimensional. Ca2+ is bonded in a 8-coordinate geometry to eight O2- atoms. There are a spread of Ca–O bond distances ranging from 2.34–2.89 Å. Zr4+ is bonded to six O2- atoms to form corner-sharing ZrO6 octahedra. The corner-sharing octahedra tilt angles range from 35–36°. There are two shorter (2.12 Å) and four longer (2.13 Å) Zr–O bond lengths. There are two inequivalent O2- sites. In the first O2- site, O2- is bonded in a 5-coordinate geometry to three equivalent Ca2+ and two equivalent Zr4+ atoms. In the second O2- site, O2- is bonded to two equivalent Ca2+ and two equivalent Zr4+ atoms to form distorted corner-sharing OCa2Zr2 tetrahedra.
DOI: 10.7924/g8cj8bjk
title: IPHEx-Southern Appalachian Mountains -- Rainfall Data 2008-2014

description: A high spatial resolution rain gauge network has been installed in the Great Smoky Mountains National Park (GSMNP) in the southern Appalachians since 2008. 45 stations were equipped with tipping bucket (TB) gauges operating for the longest continuous period, distributed at low to high elevations (from 280 to 1920 m) on mountain ridges and valleys.

For further information, please contact:
Civil and Environmental Engineering, Pratt School of Engineering, Duke University (Barros, A. P.; Wilson, A. M.; Cutrell, G.; Arulraj, M.);
Department of Atmospheric Sciences, University of North Carolina, Asheville (Miller, D.);
U. S. National Park Service (Super, P.);
NASA - Marshall Space Flight Center (Petersen, W. A.)
DOI: 10.17632/mhmbmmk5cv.1
title: New Zealand Process Attribute Mapping: Hydrochemical surface and groundwater data (2007-2017)

description: This dataset was developed to evaluate the method for Rissmann et al. (submitted to JGR Biogeosciences) 'A hydrochemically guided landscape-based classification for water quality: a case study application of process-attribute mapping (PoAM) at a national scale'. The surface water dataset was produced from the collation of chemical analyses of low, median, and event flows taken from 730 long-term surface water monitoring sites across the regions of Northland, Auckland, Waikato, Bay of Plenty, Manawatū-Whanganui, Canterbury, and Southland (representing 58 % of New Zealand), between 2017 and 2019. Across the same regions and for the same time period, data for the sample chemical constituents were collected at 2,191 long-term groundwater monitoring sites. The respective hydrochemical datasets for surface water and groundwater were subsequently combined with pre-existing hydrochemical data collected between 2007-2017 and median values calculated. The hydrochemical analytes include major constituents (Ca, Cl, dissolved organic and inorganic carbon, total alkalinity and HCO3 alkalinity, K, Mg, Na, SO4, SiO2), minor constituents (B, Br, F, Fe, I, Mn), water quality (total nitrogen, nitrate, nitrite, ammoniacal nitrogen, total phosphorus, dissolved reactive phosphorus, turbidity, clarity, E.coli and faecal coliforms), and field parameters (dissolved oxygen, electrical conductivity, oxidation-reduction potential, pH (field, lab), temperature). Not all surface water and groundwater sites have all analytes measured. Internal quality control in this project removed sites with point source impacts, including sites downstream of municipal wastewater discharges. Site water quality medians for each monitoring location were combined with the mean process attribute gradient score for the capture zone. Process attribute gradients represent the four dominant processes controlling water composition, specifically atmospheric, hydrological, microbially mediated redox, physical and chemical weathering. Further details can be found in Rissmann et al. (submitted).
DOI: 10.23708/zdd0ow
title: Passive case detection of Human African Trypanosomiasis in Guinea: symptoms and signs, rapid diagnostic test results and laboratory test results

description: In the last decade, the prevalence of Trypanosoma brucei gambiense human African trypanosomiasis (HAT) has fallen and HAT has been targeted for elimination. At low disease prevalence, integration of case finding into routine activities of peripheral health centres becomes crucial. However, HAT case detection by the peripheral health system with limited resources requires adapted diagnostic tests and test algorithms. The objective of the DiTECT-HAT-WP2 study was to determine the diagnostic performance and cost of rapid diagnostic tests (RDTs) performed on clinical suspects in peripheral health centres, whether or not followed by serological and/or molecular tests on filter paper done at regional reference centres. DiTECT-HAT has been registered in clinicaltrials.gov under ID NCT03356665, and is part of the DiTECT-HAT project, funded by EDCTP2-Horizon 2020- European Union. The DiTECT-HAT-WP2 study was conducted in centres for diagnosis and treatment and in sites for serological screening in Guinea, Côte d’Ivoire and DR Congo. In these centres and sites, clinical suspects were tested with several commercially available RDTs for HAT. Clinical suspects with at least 1 RDT positive result, 1° underwent parasitological examination and 2° blood collection on filter paper for reference analysis in trypanolysis, LAMP, ELISA and real-time PCR in the regional reference laboratory. If the reference laboratory tests and parasitological examinations were all negative, the suspect was considered free of HAT. If at least 1 reference test was positive, parasitological examinations were repeated at least twice at three months interval, unless trypanosomes were detected. The deposited file contains the DiTECT-HAT-WP2 study protocol in French and English, the informed consent form, and metadata of DiTECT-HAT-WP2 in Guinea. DiTECT-HAT-WP2 data will be made available to qualified researchers upon request after signing a confidentiality agreement. Data requests may be sent to the coordinating investigator (for coordinates see study protocol, Institut de Recherche pour le Développement).