cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11305727.v1
title: Multidrug resistant monophasic variants of Salmonella Typhimurium from pig production in Thailand

description: <b>Background:</b> Monophasic <i>Salmonella</i> Typhimurium or <i>S. enterica</i> 1,4,[5],12:i:- is among the top five serotypes reported in Thailand. In this study, nineteen whole-genome sequenced (WGS) monophasic <i>S</i>. Typhimurium from the pig production chain in Chiang Mai and Lamphun province during 2013–2015 were probed for the presence of antimicrobial resistance genes and <i>Salmonella</i> Pathogenicity Islands<i>.</i> Genetic diversity of the strains was also investigated through whole-genome multilocus sequence typing (wgMLST). <b>Results:</b> All 19 isolates carried aminoglycoside and beta-lactam class resistance genes. However, fusidic acid, glycopeptide, nitroimidazole, oxazolidinone, rifampicin associated-resistance genes were not observed. Seven out of 14 known SPIs were detected, including SPI-5, SPI-13 and SPI-14, which were deteced in all isolates. Core (2,978 genes) and pangenomes (5,022 genes) were analysed on a gene-by-gene basis (wgMLST). All isolates were from sequence type (ST-) 34 and clustered similarly in core and pangenome genealogies. The two closest related isolates showed differences in only eighteen loci and likely share a common ancestor. <b>Conclusions:</b> WGS data is can provide higher resolution for epidemiological surveillance and outbreak investigation. Similarities in the isolates we collected suggests either a common source of infection, or persistence though the pork production process. This highlights the importance of surveillance to successfully control <i>Salmonella</i> contamination in the region.
DOI: 10.6084/m9.figshare.11303675
title: Coroner PDF reports_2_12_2019

description: This folder holds all Prevent Future Death (PFD) reports from the Courts & Tribunal Judiciary website (https://www.judiciary.uk/subject/prevention-of-future-deaths/)
DOI: 10.6084/m9.figshare.11303675.v1
title: Coroner PDF reports_2_12_2019

description: This folder holds all Prevent Future Death (PFD) reports from the Courts & Tribunal Judiciary website (https://www.judiciary.uk/subject/prevention-of-future-deaths/)
DOI: 10.6084/m9.figshare.11303651
title: test22.xlsx

description: test
DOI: 10.6084/m9.figshare.11303546
title: Raw Data from Network analysis reveals underlying syntactic features in a vocally learnt mammalian display, humpback whale song

description: This file contains the data used in this study
DOI: 10.15131/shef.data.11303525
title: Data Package for "Characterising cross-linking within polymeric biomaterials in the SEM by Secondary Electron Hyperspectral Imaging"

description: Data Package for "Characterising cross-linking within polymeric biomaterials in the SEM by Secondary Electron Hyperspectral Imaging"<br><br>Please read the Supporting Information given in DOI:10.1002/marc.201900484<br>The author wishes to monitor data access. Please contact nfarr1@sheffield.ac.uk to request access to these files. <br><br>
DOI: 10.15131/shef.data.11303525.v1
title: Data Package for "Characterising cross-linking within polymeric biomaterials in the SEM by Secondary Electron Hyperspectral Imaging"

description: Data Package for "Characterising cross-linking within polymeric biomaterials in the SEM by Secondary Electron Hyperspectral Imaging"<br><br>Please read the Supporting Information given in DOI:10.1002/marc.201900484<br>The author wishes to monitor data access. Please contact nfarr1@sheffield.ac.uk to request access to these files. <br><br>
DOI: 10.6084/m9.figshare.11303306
title: Left ventricle of the maternal heart 9 years after pregnancy

description: Anatomy of the left ventricle LV of 153 mothers 5-10 years after pregnancy, with and without a history of hypertension<b></b><i></i><sub></sub><sup></sup><br>The LV end diastolic anatomy was reconstructed from the contours using high order interpolation meshes as described in our previous work. The 153 meshes were then spatially aligned by their centre of mass, and by an orientation defined by their basal plane and the left to right direction set by the centre of mass of the LV and right ventricle. A statistical shape model was then built with a principal component analysis (PCA), finding the modes of anatomical variation of this cohort. <br>Data shared containts:<b>1. AtlasMeshData.zip</b>, where each case has 1.1 binary.vtk: The mask of the left ventricular (LV) myocardium and right ventricular blood pool from the short axis magnetic resonance image in end diastole1.2 binary_mesh files (.exelem and .exnode): the cubic Hermite mesh that was personalised to the anatomy of the left ventricle1.3 Image_binary_mesh.jpg: image of the overlay between the fitted mesh and the mask of the LV myocardium1.4 Image_Initialization.jpg: image of the overlay between the template LV mesh used for personalization and the mask of the LV myocardium1.5 ImageDistances2ClosestPointbinary_meshxxxxxxxxxx.jpg: image of the distances between the LV mesh and the mask of the LV myocardium (xxxxxxxxxx is a digit encodign for the time when the image was generated)1.6 PersonalizationReportbinary.txt: file with metrics of mesh fitting accuracy and quality<b></b><i></i><sub></sub><sup></sup><b></b><br><b>2. VTKMeshes.zip</b>: the collection of all the LV shapes in VTK format, after correction of centre of mass and circumferential orientation. <br><b>3</b><b>. AtlasModesPVSn43_rvspace_s4_c3.pdf</b>: illustration of all the 10 first modes of anatomical variation, together with the box-plot of the differences between hypertensive pregnancy (blue) and normotensive pregnancy (green).<b></b><br><b>4. Mode6revealsDifferences.png</b>: screen capture of mode 6 from last file, revealing the largest differences between the groups of hypertensive and normotensive pregnancy.<br><br>
DOI: 10.6084/m9.figshare.11303282
title: Example UV Spectra for iFit

description: Dataset supporting the submission of a paper describing iFit, a new tool for measuring SO2 column densities from UV scattered sunlight spectra<br>
DOI: 10.6084/m9.figshare.11303306.v1
title: Left ventricle of the maternal heart 9 years after pregnancy

description: Anatomy of the left ventricle LV of 153 mothers 5-10 years after pregnancy, with and without a history of hypertension<b></b><i></i><sub></sub><sup></sup><br>The LV end diastolic anatomy was reconstructed from the contours using high order interpolation meshes as described in our previous work. The 153 meshes were then spatially aligned by their centre of mass, and by an orientation defined by their basal plane and the left to right direction set by the centre of mass of the LV and right ventricle. A statistical shape model was then built with a principal component analysis (PCA), finding the modes of anatomical variation of this cohort. <br>Data shared containts:<b>1. AtlasMeshData.zip</b>, where each case has 1.1 binary.vtk: The mask of the left ventricular (LV) myocardium and right ventricular blood pool from the short axis magnetic resonance image in end diastole1.2 binary_mesh files (.exelem and .exnode): the cubic Hermite mesh that was personalised to the anatomy of the left ventricle1.3 Image_binary_mesh.jpg: image of the overlay between the fitted mesh and the mask of the LV myocardium1.4 Image_Initialization.jpg: image of the overlay between the template LV mesh used for personalization and the mask of the LV myocardium1.5 ImageDistances2ClosestPointbinary_meshxxxxxxxxxx.jpg: image of the distances between the LV mesh and the mask of the LV myocardium (xxxxxxxxxx is a digit encodign for the time when the image was generated)1.6 PersonalizationReportbinary.txt: file with metrics of mesh fitting accuracy and quality<b></b><i></i><sub></sub><sup></sup><b></b><br><b>2. VTKMeshes.zip</b>: the collection of all the LV shapes in VTK format, after correction of centre of mass and circumferential orientation. <br><b>3</b><b>. AtlasModesPVSn43_rvspace_s4_c3.pdf</b>: illustration of all the 10 first modes of anatomical variation, together with the box-plot of the differences between hypertensive pregnancy (blue) and normotensive pregnancy (green).<b></b><br><b>4. Mode6revealsDifferences.png</b>: screen capture of mode 6 from last file, revealing the largest differences between the groups of hypertensive and normotensive pregnancy.<br><br>
DOI: 10.6084/m9.figshare.11303189
title: Table_S1.xlsx

description: Table S1: Phenotypic measures for the 230 inbred tested. Values represent the mean of each line and their standard deviations. PL: plant lenght, PW: plant weight, GERM: germination percentage in the control (C) and inoculated plants (I). Seed_C and Seed_I: number of seeds used in the control and inoculated towels, respectively.
DOI: 10.6084/m9.figshare.11303201
title: Table_S2

description: Table of LD analysis
DOI: 10.6084/m9.figshare.11303186
title: Test data for VQuAnDa

description: Test set for VQuAnDa
DOI: 10.6084/m9.figshare.11303201.v1
title: Table_S2

description: Table of LD analysis
DOI: 10.6084/m9.figshare.11303189.v1
title: Table_S1.xlsx

description: Table S1: Phenotypic measures for the 230 inbred tested. Values represent the mean of each line and their standard deviations. PL: plant lenght, PW: plant weight, GERM: germination percentage in the control (C) and inoculated plants (I). Seed_C and Seed_I: number of seeds used in the control and inoculated towels, respectively.
DOI: 10.6084/m9.figshare.11303156
title: Train data for VQuAnDa

description: Train set for VQuAnDa
DOI: 10.6084/m9.figshare.11302982
title: Metadata record for: Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017

description: This dataset contains key characteristics about the data described in the Data Descriptor Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11303186.v1
title: Test data

description: Test set for VQuAnDa
DOI: 10.6084/m9.figshare.11303135.v2
title: Metadata record for: De novo transcriptome assembly and annotation for gene discovery in avocado, macadamia and mango

description: This dataset contains key characteristics about the data described in the Data Descriptor De novo transcriptome assembly and annotation for gene discovery in avocado, macadamia and mango. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11303186.v2
title: Test data for VQuAnDa

description: Test set for VQuAnDa
DOI: 10.6084/m9.figshare.11302982.v2
title: Metadata record for: Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017

description: This dataset contains key characteristics about the data described in the Data Descriptor Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11303135
title: Metadata record for: De novo transcriptome assembly and annotation for gene discovery in avocado, macadamia and mango

description: This dataset contains key characteristics about the data described in the Data Descriptor De novo transcriptome assembly and annotation for gene discovery in avocado, macadamia and mango. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11303156.v1
title: Train data

description: Train set for VQuAnDa
DOI: 10.6084/m9.figshare.11303186.v4
title: Test data for VQuAnDa

description: Test set for VQuAnDa
DOI: 10.6084/m9.figshare.11302982.v1
title: Metadata record for: Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017

description: This dataset contains key characteristics about the data described in the Data Descriptor Expansion of the cassava brown streak pandemic in Uganda revealed by annual field survey data for 2004 to 2017. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11303156.v3
title: Train data for VQuAnDa

description: Train set for VQuAnDa
DOI: 10.6084/m9.figshare.11303156.v2
title: Train data for VQUANDA

description: Train set for VQUANDA
DOI: 10.6084/m9.figshare.11303186.v3
title: Test data for VQUANDA

description: Test set for VQUANDA
DOI: 10.6084/m9.figshare.11302910
title: ESM 1 XLS: Chemical variation, modal composition and classification of granitoids

description: Database used for the statistical analysis (XLS)
DOI: 10.6084/m9.figshare.11302901
title: ESM 1 TXT: Chemical variation, modal composition and classification of granitoids

description: Database used for the statistical analysis (plain text, TXT)
DOI: 10.6084/m9.figshare.11302895
title: ESM 3: Chemical variation, modal composition and classification of granitoids

description: html file. 3D plot of the first three components (LD<sub>1</sub> – LD<sub>2</sub> – LD<sub>3</sub>) of the Linear Discriminant Analysis
DOI: 10.6084/m9.figshare.11302901.v1
title: ESM 1 TXT: Chemical variation, modal composition and classification of granitoids

description: Database used for the statistical analysis (plain text, TXT)
DOI: 10.6084/m9.figshare.11302895.v1
title: ESM 3: Chemical variation, modal composition and classification of granitoids

description: html file. 3D plot of the first three components (LD<sub>1</sub> – LD<sub>2</sub> – LD<sub>3</sub>) of the Linear Discriminant Analysis
DOI: 10.6084/m9.figshare.11302880
title: ESM 2: Chemical variation, modal composition and classification of granitoids

description: R/GCDkit script used to plot the Figures 11–17, and ESM 4–8. Tested under GCDkit 6.0. To use this script, edit line 214 (to match the actual directory on your system where the file is stored), and line 218 (to match the actual file name)
DOI: 10.6084/m9.figshare.11302880.v1
title: ESM 2: Chemical variation, modal composition and classification of granitoids

description: R/GCDkit script used to plot the Figures 11–17, and ESM 4–8. Tested under GCDkit 6.0. To use this script, edit line 214 (to match the actual directory on your system where the file is stored), and line 218 (to match the actual file name)
DOI: 10.6084/m9.figshare.11302748
title: Dataset belonging to 'Posten, scrollen, appen en snappen’: Jongeren (14-15 jaar) en social media in 2019

description: This dataset belongs to:<br>van Driel, I. I., Pouwels, J. L., Beyens, I., Keijsers, L., & Valkenburg, P. M. (2019). ‘Posten, scrollen, appen en snappen’: Jongeren (14-15 jaar) en social media in 2019, Center for Research on Children, Adolescents, and the Media (CcaM), Universiteit van Amsterdam.<br>For the final publication and a full description of the dataset, see the Open Science Framework (OSF): https://osf.io/v5txz/.<br><br>Please create your own OSF project to share with others how you worked with these data and refer to this dataset.<br>
DOI: 10.6084/m9.figshare.11302727
title: Video 5 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302748.v1
title: Dataset belonging to 'Posten, scrollen, appen en snappen’: Jongeren (14-15 jaar) en social media in 2019

description: This dataset belongs to:<br>van Driel, I. I., Pouwels, J. L., Beyens, I., Keijsers, L., & Valkenburg, P. M. (2019). ‘Posten, scrollen, appen en snappen’: Jongeren (14-15 jaar) en social media in 2019, Center for Research on Children, Adolescents, and the Media (CcaM), Universiteit van Amsterdam.<br>For the final publication and a full description of the dataset, see the Open Science Framework (OSF): https://osf.io/v5txz/.<br><br>Please create your own OSF project to share with others how you worked with these data and refer to this dataset.<br>
DOI: 10.6084/m9.figshare.11302724
title: Video 4 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302727.v1
title: Video 5 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302712
title: Video 3 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.
DOI: 10.6084/m9.figshare.11302718
title: Video 1 from Wave polarization and dynamic degeneracy in a chiral elastic lattice

description: This paper addresses fundamental questions arising in the theory of Bloch–Floquet waves in chiral elastic lattice systems. This area has received a significant attention in the context of ‘topologically protected’ waveforms. Although practical applications of chiral elastic lattices are widely appreciated, especially in problems of controlling low-frequency vibrations, wave polarization and filtering, the fundamental questions of the relationship of these lattices to classical waveforms associated with longitudinal and shear waves retain a substantial scope for further development. The notion of chirality is introduced into the systematic analysis of dispersive elastic waves in a doubly-periodic lattice. Important quantitative characteristics of the dynamic response of the lattice, such as lattice flux and lattice circulation, are used in the analysis along with the novel concept of ‘vortex waveforms’ that characterize the dynamic response of the chiral system. We note that the continuum concepts of pressure and shear waves do not apply for waves in a lattice, especially in the case when the wavelength is comparable with the size of the elementary cell of the periodic structure. Special critical regimes are highlighted when vortex waveforms become dominant. Analytical findings are accompanied by illustrative numerical simulations.