cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1396222
title: Sets A1 and A2 of color images

description: This fileset contains two sets (A1 and A2) of color images in acquisition devices’ optical resolutions, that were used in research described in: R.Starosolski: <em>Reversible denoising and lifting based color component transformation for lossless image compression</em>, submitted. These sets are publicly available. Images are stored in the PPM P6 format (color, binary). A1 is a set of 3 images acquired from a 36mm high quality diapositive film using a Minolta Dimage 5400 film scanner, images stored in device’s optical resolution, 8-bit component depth, image sizes from 7376x4832 to 7424x4864. These images after size reduction and conversion to grayscale where included in the mednat set(http://sun.aei.polsl.pl/~rstaros/mednat/index.html). A2 is a set of 17 images acquired using a general purpose Agfa e50 scanner from 36mm negatives, images stored in device’s optical resolution, 8-bit component depth, image sizes from 1620x1128 to 1740x1164.
DOI: 10.6084/m9.figshare.1409398.v286
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Moreover, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1409398.v287
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Moreover, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1396209
title: Cadmium effects on microbial community in LongJiang River

description: In this paper, we collected water samples and sludge samples respectively along the whole LongJiang River, determined the physical and chemical indexes of all the samples to investigate the water quality and the distribution of heavy metal in LongJiang River. In additional, we applied the modern molecular technology, especially the 16SrRNA high throughput sequencing technology, to investigate the microbial community and research the effects of the distribution of heavy metal on microbial community by analyzing the correlation of the cadmium distribution in LongJiang River and the microbial community.
DOI: 10.6084/m9.figshare.1396204
title: Implantação de Layout Celular em Empresa Start-Up de Tecnologia

description: Este artigo apresenta a elaboração e implantação de um layout celular através das ferramentas de processos, Fluxograma, 5W2H e Diagrama de causa e efeito, pactuando no apoio da tomada de decisão do melhor layout a ser implantado. Neste sentido, o escopo da pesquisa objetiva apresentar a implantação do layout celular em uma empresa start-up de tecnologia. Como metodologia de pesquisa definiu-se como estudo de caso, onde foi possível realizar a análise da estrutura física que corresponde a 60 m² de área de produção, para implementar o layout celular. Como principal resultado obtido destaca-se o sucesso da implantação, onde, o mesmo atendeu todas as necessidades de fabricação do produto na organização pesquisada. Concomitantemente a evolução do layout foram definidos quatro postos de trabalho, onde se tem a entrada de MP em A e a saída do produto acabado em D.
DOI: 10.6084/m9.figshare.1396209.v1
title: Cadmium effects on microbial community in LongJiang River

description: In this paper, we collected water samples and sludge samples respectively along the whole LongJiang River, determined the physical and chemical indexes of all the samples to investigate the water quality and the distribution of heavy metal in LongJiang River. In additional, we applied the modern molecular technology, especially the 16SrRNA high throughput sequencing technology, to investigate the microbial community and research the effects of the distribution of heavy metal on microbial community by analyzing the correlation of the cadmium distribution in LongJiang River and the microbial community.
DOI: 10.6084/m9.figshare.1409398.v288
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Moreover, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1394988
title: Hindcast data for 2002

description: Wave model results from 2002 hindcast by: Christian M. Appendini, Alec Torres-Freyermuth, Paulo Salles, Jose López-González, and E. Tonatiuh Mendoza, 2014: Wave Climate and Trends for the Gulf of Mexico: A 30-Yr Wave Hindcast. J. Climate, 27, 1619–1632.
DOI: 10.6084/m9.figshare.1396204.v1
title: Implantação de Layout Celular em Empresa Start-Up de Tecnologia

description: Este artigo apresenta a elaboração e implantação de um layout celular através das ferramentas de processos, Fluxograma, 5W2H e Diagrama de causa e efeito, pactuando no apoio da tomada de decisão do melhor layout a ser implantado. Neste sentido, o escopo da pesquisa objetiva apresentar a implantação do layout celular em uma empresa start-up de tecnologia. Como metodologia de pesquisa definiu-se como estudo de caso, onde foi possível realizar a análise da estrutura física que corresponde a 60 m² de área de produção, para implementar o layout celular. Como principal resultado obtido destaca-se o sucesso da implantação, onde, o mesmo atendeu todas as necessidades de fabricação do produto na organização pesquisada. Concomitantemente a evolução do layout foram definidos quatro postos de trabalho, onde se tem a entrada de MP em A e a saída do produto acabado em D.
DOI: 10.6084/m9.figshare.1409398.v289
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Moreover, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1394983
title: Soil-borne EPF and farming practices

description: Data from Eric Clifton's MS research
DOI: 10.6084/m9.figshare.1394983.v1
title: Soil-borne EPF and farming practices

description: Data from Eric Clifton's MS research
DOI: 10.6084/m9.figshare.1394977
title: Cuke Particle Positions - 2068-2077 - Genetic sites

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day.
DOI: 10.6084/m9.figshare.1394988.v1
title: Hindcast data for 2002

description: Wave model results from 2002 hindcast by: Christian M. Appendini, Alec Torres-Freyermuth, Paulo Salles, Jose López-González, and E. Tonatiuh Mendoza, 2014: Wave Climate and Trends for the Gulf of Mexico: A 30-Yr Wave Hindcast. J. Climate, 27, 1619–1632.
DOI: 10.6084/m9.figshare.1409398.v290
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Moreover, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1394977.v1
title: Cuke Particle Positions - 2068-2077 - Genetic sites

description: LTRANS V2 raw output: Longitude, Latitude, depth, boundary status, and release site. Directories are structured as G1998\152\1\ meaning treatmentyear\releaseday\bin\. Directories labelled with the year 2098-2107 actually correspond to the years 2068-2077. Files are named para 1002.csv which contains all the positions (of that treatment, year, site, and release day) at the end of the first day.
DOI: 10.6084/m9.figshare.1394967
title: MEDICINA OCUPACIONAL

description: Examples
DOI: 10.6084/m9.figshare.1394974
title: ARCS 2015 - Building an environment for open data

description: <em>Slides from ARCS 2015 - "Building an environment for open data" panel</em> <em>Speakers (in order): Erin McKiernan, Shreejoy Tripathy, Dan Valen, Jennifer Lin</em> <em><br></em> There is increasing recognition of the benefits of data sharing. Some funders and publishers now require researchers to make their data openly available, in part in the interest of reproducibility. Some laboratories have experienced the advantages of data sharing in the form of new collaborations and increased citations. However, several hurdles still exist that have prevented the widespread adoption of data sharing. This panel will go beyond the message of 'open data is good' to discuss practical challenges and solutions, bringing together the early-career researcher, open repository, and publisher perspectives. We will discuss the concerns researchers have with respect to open data, including fear of 'scooping', lack of credit for data sharing in evaluations, and data preparation. We will hear from one open repository (figshare) on infrastructure solutions for data storage and permanency. Finally, we will talk about the positive and negative experiences of one publisher (PLOS) after enacting an open data policy, and recommendations for other publishers to encourage data sharing. Overall, we aim to generate ideas and discussion about how to build an environment conducive to open data.
DOI: 10.6084/m9.figshare.1394988.v2
title: Hindcast data for 2002

description: Wave model results from 2002 hindcast by: Christian M. Appendini, Alec Torres-Freyermuth, Paulo Salles, Jose López-González, and E. Tonatiuh Mendoza, 2014: Wave Climate and Trends for the Gulf of Mexico: A 30-Yr Wave Hindcast. J. Climate, 27, 1619–1632.
DOI: 10.6084/m9.figshare.1394967.v1
title: MEDICINA OCUPACIONAL

description: Examples
DOI: 10.6084/m9.figshare.1409398.v291
title: ABO phenotype protected reproduction as it is based on fucosylations.

description: The molecular biological relationship between human fertility and the formation of the ABO(H) blood group phenotype is evident in the rare (Oh) or <i>Bombay</i> blood type, which, based on the history of his own family, the <i>Darwin/Wedgewood Dynasty</i>, Charles Darwin would have interpreted as resulting from reduced fertility in consanguinities. In its native form, the <i>Bombay</i> type occurs in individuals with an extremely rare genotype (h/h;se/se), in whom the fucosyltransferases FUT1 and FUT2 are not produced due to point mutations. These enzymes, which are encoded on chromosome 19, are epistatically connected with the A and B allelic glycotransferase functions encoded on chromosome 9, and the fucosyl residues provide the functional-structural basis for the formation of any ABO(H) phenotype on the cell surface or in secretions and plasma proteins. Immunoglobulins are also heavily fucosylated, and fucosyl residues appear, via developmental variations in their positions on cell surfaces and on the heavy chains of immunoglobulins, to increase or reduce antibody-mediated cellular cytotoxicity involving physiological anti-self-reactivity; moreover, by regulating the assembly and intracellular signalling of precursor B cell receptors, the core fucosylation of immunoglobulin heavy chains represents a key mechanism in clonal selection. In fact, the seminal plasma of leukospermic infertile men has been reported to exhibit high levels of poorly core-fucosylated IgG. Thus, when antibody-dependent cellular cytotoxicity can be increased 50-fold simply by removing the single fucose residue from the Fc glycan, in <i>Bombay </i>type individuals, the non-somatic glycosylation processes of embryogenic stem cell-to-germ cell transformation are most likely exposed to metabolic competition with multiple glycosidic sites of poorly fucosylated, glycan-depleted immunoglobulins, suggesting to promote anti-self-reactive cellular cytotoxicity in male gamete performance.
DOI: 10.6084/m9.figshare.1394966
title: Asma & Aluminio

description: Estudio Epidemiologico
DOI: 10.6084/m9.figshare.1394961
title: Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes

description: Aquatic photosynthetic eukaryotes represent highly diverse groups (green, red, and chromalveolate algae) derived from multiple endosymbiosis events, covering a wide spectrum of the tree of life. They are responsible for about 50% of the global photosynthesis and serve as the foundation for oceanic and fresh water food webs. Although the ecophysiology and molecular ecology of some algal species are extensively studied, some basic aspects of algal cell biology are still underexplored. The recent wealth of genomic resources from algae has opened new frontiers to decipher the role of cell signaling pathways and their function in an ecological and biotechnological context. Here, we took a bioinformatic approach to explore the distribution and conservation of TOR and autophagy-related (ATG) proteins (Atg in yeast) in diverse algal groups. Our genomic analysis demonstrates conservation of TOR and ATG proteins in green algae. In contrast, in all 5 available red algal genomes, we could not detect the sequences that encode for any of the 17 core ATG proteins examined, albeit TOR and its interacting proteins are conserved. This intriguing data suggests that the autophagy pathway is not conserved in red algae as it is in the entire eukaryote domain. In contrast, chromalveolates, despite being derived from the red-plastid lineage, retain and express <i>ATG</i> genes, which raises a fundamental question regarding the acquisition of <i>ATG</i> genes during algal evolution. Among chromalveolates, <i>Emiliania huxleyi</i> (Haptophyta), a bloom-forming coccolithophore, possesses the most complete set of <i>ATG</i> genes, and may serve as a model organism to study autophagy in marine protists with great ecological significance.