cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14838351.v1
title: Supplementary Material for: Intranasal Steroid Use and Satisfaction in Allergic Rhinitis: A Cross-Sectional Study from an Asian Perspective

description: <b><i>Background:</i></b> Intranasal steroid (INS) is the most effective medication class for controlling allergic rhinitis (AR) symptoms; however, its effectiveness is limited by patient compliance. Previous studies have explored INS use, compliance, satisfaction, and experience. There is, however, no Asian study on these factors in entirety. <b><i>Objective:</i></b> We aimed to investigate the rate of compliance to usage of INS and explore the reasons for noncompliance in our local population. <b><i>Methods:</i></b> We conducted a prospective cross-sectional study on 65 AR patients in a tertiary hospital. Recruited patients were administered a questionnaire to collect data about symptoms, INS use, and concerns they may have. Statistical analysis was performed using SPSS. <b><i>Results:</i></b> The overall compliance rate to INS was 63.1%. Noncompliance was associated with increased frequency of dosing (<i>p</i> = 0.050), presence of sensory attributes (<i>p</i> = 0.041), and forgetfulness (<i>p</i> = 0.049). The top 3 most frequent sensory attributes experienced by patients include throat rundown (29.2%), aftertaste (21.5%), and immediate taste (20.0%). There was a significant difference between brands of INS with regard to sensory attributes experienced (<i>p</i> = 0.003) but no side effects (<i>p</i> = 0.070). <b><i>Conclusions:</i></b> Identifying risk factors for noncompliance to INS can help health-care providers address difficulties faced by patients and hence increase compliance, allowing better control of AR symptoms.
DOI: 10.6084/m9.figshare.14838428
title: S2 THE RESPONSE OF CALCAREOUS NANNOPLANKTON TO THE LATEST PLIENSBACHIAN-EARLY TOARCIAN ENVIRONMENTAL CHANGES IN THE CAMINO SECTION (BASQUE CANTABRIAN BASIN, NORTH SPAIN)

description: Document providing calcareous nannofossil absolute abundances
DOI: 10.6084/m9.figshare.14838425
title: S4 THE RESPONSE OF CALCAREOUS NANNOPLANKTON TO THE LATEST PLIENSBACHIAN-EARLY TOARCIAN ENVIRONMENTAL CHANGES IN THE CAMINO SECTION (BASQUE CANTABRIAN BASIN, NORTH SPAIN)

description: Document providing contribution PCA factors to the variances
DOI: 10.5281/zenodo.5025931
title: Pyrrhura griseipectus SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14838422
title: S5 THE RESPONSE OF CALCAREOUS NANNOPLANKTON TO THE LATEST PLIENSBACHIAN-EARLY TOARCIAN ENVIRONMENTAL CHANGES IN THE CAMINO SECTION (BASQUE CANTABRIAN BASIN, NORTH SPAIN)

description: Document providing PCA factor loading of the considered coccolith taxa
DOI: 10.5281/zenodo.5025930
title: Pyrrhura griseipectus SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.14838419
title: S1 THE RESPONSE OF CALCAREOUS NANNOPLANKTON TO THE LATEST PLIENSBACHIAN-EARLY TOARCIAN ENVIRONMENTAL CHANGES IN THE CAMINO SECTION (BASQUE CANTABRIAN BASIN, NORTH SPAIN)

description: Document providing calcareous nannofossil relative abundances
DOI: 10.6084/m9.figshare.14838416
title: S3 THE RESPONSE OF CALCAREOUS NANNOPLANKTON TO THE LATEST PLIENSBACHIAN-EARLY TOARCIAN ENVIRONMENTAL CHANGES IN THE CAMINO SECTION (BASQUE CANTABRIAN BASIN, NORTH SPAIN)

description: Document providing stable isotopes and TOC
DOI: 10.6084/m9.figshare.14838450
title: µCT series of Bathymodiolus azoricus plantigrade (1643-02)

description: SRµCT scan of a symbiotic Bathymodiolus azoricus plantigrade. The mussel was sampled at the Bubbylon hydrothermal vent (37.801 N; -31.537 E) at 1002 m water depth in 2010. The mussel was fixed with 2.5% glutaraldehyde and stored in Trump's solution. The sample was scanned at the DESY in Hamburg Germany.
DOI: 10.6084/m9.figshare.14838450.v1
title: µCT series of Bathymodiolus azoricus plantigrade (1643-02)

description: SRµCT scan of a symbiotic Bathymodiolus azoricus plantigrade. The mussel was sampled at the Bubbylon hydrothermal vent (37.801 N; -31.537 E) at 1002 m water depth in 2010. The mussel was fixed with 2.5% glutaraldehyde and stored in Trump's solution. The sample was scanned at the DESY in Hamburg Germany.
DOI: 10.6084/m9.figshare.14838246
title: Supplementary Material for: Molecular and Cellular Mechanisms Underlying Temperature-Dependent Sex Determination in Turtles

description: The discovery in mammals that fetal testes are required in order to develop the male phenotype inspired research efforts to elucidate the mechanisms underlying gonadal sex determination and differentiation in vertebrates. A pioneer work in 1966 that demonstrated the influence of incubation temperature on sexual phenotype in some reptilian species triggered great interest in the environment’s role as a modulator of plasticity in sex determination. Several chelonian species have been used as animal models to test hypotheses concerning the mechanisms involved in temperature-dependent sex determination (TSD). This brief review intends to outline the history of scientific efforts that corroborate our current understanding of the state-of-the-art in TSD using chelonian species as a reference.
DOI: 10.6084/m9.figshare.14838246.v1
title: Supplementary Material for: Molecular and Cellular Mechanisms Underlying Temperature-Dependent Sex Determination in Turtles

description: The discovery in mammals that fetal testes are required in order to develop the male phenotype inspired research efforts to elucidate the mechanisms underlying gonadal sex determination and differentiation in vertebrates. A pioneer work in 1966 that demonstrated the influence of incubation temperature on sexual phenotype in some reptilian species triggered great interest in the environment’s role as a modulator of plasticity in sex determination. Several chelonian species have been used as animal models to test hypotheses concerning the mechanisms involved in temperature-dependent sex determination (TSD). This brief review intends to outline the history of scientific efforts that corroborate our current understanding of the state-of-the-art in TSD using chelonian species as a reference.
DOI: 10.6084/m9.figshare.14838402.v2
title: Sigmoid AHP model parameters.docx

description: Dataset of simplified model of neurons with improved spike timing accuracy for use in modeling of large neural networks.
DOI: 10.6084/m9.figshare.14838402.v3
title: Sigmoid AHP model parameters.docx

description: Dataset of simplified model of neurons with improved spike timing accuracy for use in modeling of large neural networks.
DOI: 10.5281/zenodo.5019553
title: 2017–2019 Land Cover Map of Pyrénées-Atlantiques

description: This archive contains a land cover map of the French department Pyrénées-Atlantiques (64) based on Sentinel-2 satellite images performed with iota² chain (https://framagit.org/iota2-project/iota2/). The algorithm used is a Random Forest performed on all L3A images of the 2017–2019 time period. The training and validation data that we used is a combination of Corine Land Cover (Copernicus), BD TOPO (IGN), Registre Parcellaire Graphique (IGN) and self performed photo-interpretation. <br> <br> It is part of a work in progress and the comparison between different time series and preprocessing levels still need to be completed. Also, the lack of training data for the photo-interpreted classes 'landes basses' (low heath shrublands), 'landes hautes' (high heath shrublands) and 'landes à dynamique de boisement' (young-growth forest) leads to significantly lower results for these classes. They are still massively confused with other land covers like grasslands and broadleaf mature forests. Have a look at the confusion matrix provided in the archive. It is performed on a different dataset than the one used for training. We are looking forward to improving these results in the upcoming months. <br> <br> The archive also contains a text file with the nomenclature and the Qgis style layer.
DOI: 10.5281/zenodo.5026049
title: Eleginus gracilis SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5026048
title: Eleginus gracilis SPAdes preassembly

description: .
DOI: 10.15468/d3q2k5
title: Compsodactylus Fuhrmann, 2012 (Coleoptera: Scarabaeidae: Melolonthinae) distributional notes and a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fuhrmann, Juares, Smith, Andrew B. T. (2021): Compsodactylus Fuhrmann, 2012 (Coleoptera: Scarabaeidae: Melolonthinae) distributional notes and a new species. Zootaxa 4990 (2): 387-393, DOI: https://doi.org/10.11646/zootaxa.4990.2.12
DOI: 10.5281/zenodo.5026074
title: Gadus macrocephalus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5026073
title: Gadus macrocephalus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5024655
title: Grid'5000 performance data

description: Collection of performance data on Grid'5000
DOI: 10.5281/zenodo.4624877
title: Grid'5000 performance data

description: Collection of performance data on Grid'5000
DOI: 10.23698/aida/drco
title: Colon data from the Visual Sweden project DROID

description: The dataset consists of 101 H colon whole slide images (WSI) - 52 abnormal and 49 benign cases. All significant abnormal findings identified are outlined and categorized into 15 types such as hyperplastic polyp, high grade adenocarcinoma and necrosis. Other tissue components such as mucosa, submucosa, as well as the surgical margin are delineated to create a complete histological map. In total, 756 separate annotations have been made to segment the different tissue structures and link them to ontological information.
DOI: 10.6084/m9.figshare.14838480
title: SD-RAN Interactive Management using INT in IEEE 802.11 Networks

description: This data is regarding the paper entitled "SD-RAN Interactive Management using INT in IEEE 802.11 Networks"
DOI: 10.23698/aida/affai
title: X-ray examinations of atypical femoral fractures

description: Atypical femoral fracture is a well-documented adverse reaction to bisphosphonate treatment, but may also have other causes. This dataset contains 433 radiographs from 149 patients with complete AFF, and 549 radiographs from 224 patients with normal femur fractures. There are no diagnoses of cancer, to reduce the risk of confounding by indication.
DOI: 10.23698/aida/kf2020
title: Knee fracture classification according to AO/OTA 2018

description: Test set used for knee fracture classification using the AO/OTA 2018 classification. 2472 images from 600 examinations. OpenAccess article available [here](https://doi.org/10.1371/journal.pone.0248809).
DOI: 10.23698/aida/ctpa
title: Computed Tomography Pulmonary Angiography (CTPA) data

description: 30 clinical routine CTPA examinations, performed on a Philips Brilliance 64 CT or GE Lightspeed VCT. 14317 axial images (1 or 0,625mm) plus additional reformats. 5 of the CTPAs are positive for pulmonary embolism and have all the emboli carefully delineated by an experienced radiologist.
DOI: 10.23698/aida/drov
title: Ovary data from the Visual Sweden project DROID

description: This dataset consists of 174 WSI ovary whole slide images (WSI): 158 malignant and 16 benign. Eight of the most common, histological definable tumour types were annotated: high grade serous carcinoma (HGSC), low grade serous carcinoma (LGSC), clear cell carcinoma (CC), endometrioid adenocarcinoma (EN), metastastic serous carcinoma (MS), metastatic other (MO), serous borderline tumor (SB) and mucinous borderline tumor (MB). Also normal ovarian tissue were annotated. 2402 separate annotations were made. For the benign structures only the epithelial structures, stroma and support tissue were annotated.
DOI: 10.23698/aida/drske
title: Skeletal data from the Visual Sweden project DROID

description: 36 radiology cases showing lytic and lytic/sclerotic (blastic) metastases i.e. bone regenerative and degenerative. These cases have all been punctured and pathologically analyzed to verify the diagnose. The metastases were segmented accurately by a radiologist and the annotations were confirmed by a second radiologist.
DOI: 10.6084/m9.figshare.14838669
title: Supplementary Material for: Accuracy and Reproducibility of Endoscopic Ultrasound B-Mode Features for Observer-Based Lymph Nodal Malignancy Prediction

description: <b><i>Background:</i></b> Endoscopic ultrasound routinely guides lymph node evaluation for the staging of a known or suspected lung cancer. Characteristics seen on B-mode imaging might help the observer decide on the lymph nodes of risk. The influence of nodal size on the predictivity of these characteristics and the agreement with which operators can combine these for malignancy risk prediction is to be determined. <b><i>Objectives:</i></b> We evaluated (1) if prospectively scored individual B-mode ultrasound features predict malignancy when further divided by size and (2) assessed if observers were able to reproducibly agree on still lymph node image malignancy risk. <b><i>Methods:</i></b> Lymph nodes as visualized by EBUS were prospectively scored for B-mode characteristics. Still B-mode images were furthermore collected. After collection, a repeated scoring of a subset of lymph nodes was retrospectively performed (<i>n</i> = 11 observers). <b><i>Results:</i></b> Analysis of 490 lymph nodes revealed the short axis size is an objective measure for stratifying risk of malignancy (ROC area under the curve 0.78). With ≥8-mm size, 210/237 malignant lymph nodes were correctly identified (89% sensitivity, 46% specificity, 61% PPV, and 81% NPV). Secondary addition of B-mode features in &lt;8-mm nodes had limited value. Retrospective analysis of intra- and interobserver scoring furthermore revealed significant disagreement. <b><i>Conclusions:</i></b> Lymph nodes of ≥8-mm size and preferably even smaller should be aspirated regardless of other B-mode features. Observer disagreement in scoring both small and large lymph nodes suggests it is infeasible to include subjective features for stratification. Future research should focus on (integrating) other (semi)quantitative values for improving prediction.
DOI: 10.6084/m9.figshare.14838669.v1
title: Supplementary Material for: Accuracy and Reproducibility of Endoscopic Ultrasound B-Mode Features for Observer-Based Lymph Nodal Malignancy Prediction

description: <b><i>Background:</i></b> Endoscopic ultrasound routinely guides lymph node evaluation for the staging of a known or suspected lung cancer. Characteristics seen on B-mode imaging might help the observer decide on the lymph nodes of risk. The influence of nodal size on the predictivity of these characteristics and the agreement with which operators can combine these for malignancy risk prediction is to be determined. <b><i>Objectives:</i></b> We evaluated (1) if prospectively scored individual B-mode ultrasound features predict malignancy when further divided by size and (2) assessed if observers were able to reproducibly agree on still lymph node image malignancy risk. <b><i>Methods:</i></b> Lymph nodes as visualized by EBUS were prospectively scored for B-mode characteristics. Still B-mode images were furthermore collected. After collection, a repeated scoring of a subset of lymph nodes was retrospectively performed (<i>n</i> = 11 observers). <b><i>Results:</i></b> Analysis of 490 lymph nodes revealed the short axis size is an objective measure for stratifying risk of malignancy (ROC area under the curve 0.78). With ≥8-mm size, 210/237 malignant lymph nodes were correctly identified (89% sensitivity, 46% specificity, 61% PPV, and 81% NPV). Secondary addition of B-mode features in &lt;8-mm nodes had limited value. Retrospective analysis of intra- and interobserver scoring furthermore revealed significant disagreement. <b><i>Conclusions:</i></b> Lymph nodes of ≥8-mm size and preferably even smaller should be aspirated regardless of other B-mode features. Observer disagreement in scoring both small and large lymph nodes suggests it is infeasible to include subjective features for stratification. Future research should focus on (integrating) other (semi)quantitative values for improving prediction.
DOI: 10.23698/aida/drli
title: Liver data from the Visual Sweden project DROID

description: 77 CT abdomen (computed tomography) examinations taken with contrast in venous phase. All cases showed liver malignancies. Manual oncological annotations were made by a radiologist and these were controlled by a second experienced radiologist. All changes with a diameter greater than 5mm were segmented and assumed metastases (cysts excluded as defined by HU). 317 lesions were annotated.
DOI: 10.23698/aida/drbr
title: Breast data from the Visual Sweden project DROID

description: This dataset consists of 361 whole slide images (WSI) - 296 malignant from women with invasive breast cancer (HER2 neg) and 65 benign. The tumours have been classified with four SNOMED-CT categories based on morphology: invasive duct carcinoma, invasive lobular carcinoma, in situ carcinoma, and others. 4144 separate annotations have been made to segment different tissue structures connected to ontologies.
DOI: 10.23698/aida/megre
title: Multi-echo gradient echo (MEGRE)

description: Multi-echo gradient echo (MEGRE) MRI data with 8 different echo times (2.38-23.6 ms) from 326 + 40 prostate cancer patients with gold fiducial markers inserted into the prostate (train/validation + test dataset). A scientific paper that utilizes this dataset for deep learning has been [published](https://doi.org/10.1088/1361-6560/abb0f9). Underlying description of the technique and its first use has been described in a [previous publication](https://www.ncbi.nlm.nih.gov/pubmed/28803447). The data contains an image volume for each patient, for each echo time. The center of mass from the three inserted prostate gold fiducial markers was manually defined. The ground truth label for this dataset consist of spherical objects with a radius of 1-12 mm, inserted in the center of mass defined locations. Method in the paper uses 9 mm radius.
DOI: 10.6073/pasta/80e55f7de4adcf3dd67563e7bc5c5b15
title: PIE LTER time series of methane ebullition measurements at four headwater streams in Massachusetts and New Hampshire.

description: Methane ebullition was monitored at four headwater streams during 2018 and 2019. Stationary bubble traps were deployed from approximately May through October. CC and SB were monitored in 2018 and 2019, while DB and CB were only monitored in 2019. 12 traps were deployed at CC, SB, and DB, and 9 traps were deployed at CB. The concentration measured in the emitted gas was multiplied by the volume measured in a trap to calculated the total methane flux via ebullition. The traps were visited at least once weekly. The mean, median, minimum, and maximum rate of ebullition across all traps at a site over a two week period are listed here.
DOI: 10.5281/zenodo.5026174
title: Trisopterus esmarkii SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5026173
title: Trisopterus esmarkii SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4449519
title: Data for the article "Faster chiral versus collinear magnetic order recovery after optical excitation revealed by femtosecond XUV scattering"

description: Data for the article "Faster chiral versus collinear magnetic order recovery after optical excitation revealed by femtosecond XUV scattering" (Faster chiral versus collinear magnetic order recovery after optical excitation revealed by femtosecond XUV scattering | Nature Communications) [2002.03971] Chiral versus collinear magnetic order dynamics: faster chiral recovery after optical excitation revealed by femtosecond XUV scattering (arxiv.org)
description: N.K., B.S., K.L., and M.K. gratefully acknowledge financial support by the Graduate School of Excellence Materials Science in Mainz (MAINZ, GSC266) and support from the Max Planck Graduate Center (MPGC). M.K. and the groups in Mainz acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—projects 290319996/TRR173, 403502522/SPP 2137 Skyrmionics and 290396061/TRR173 and the EU (ERC-2019-SyG 3D MAGiC #856538, FET-open s-NEBULA #863155). C.G. acknowledges funding by the Deutsche Forschungsgemeinschaft (DFG)—projects GU 535/4-1 and KS 62/1-1. Y.M. acknowledges funding from the DARPA TEE program through Grant MIPR (No. HR0011831554) from DOI and support from Leibniz Collaborative Excellence project OptiSPIN — Optical Control of Nanoscale Spin Textures. We also gratefully acknowledge the Jülich Supercomputing Center and RWTH Aachen University for providing computational resources under project jiff40. Measurements were carried out at the DiProI beamline at the FERMI FEL facility in Trieste, Italy. We thank FERMI FEL facility for the allocation of the beamtime and the technical support offered during the measurements. We acknowledge Felix Büttner for valuable discussions.
DOI: 10.5281/zenodo.4449518
title: Data for the article "Faster chiral versus collinear magnetic order recovery after optical excitation revealed by femtosecond XUV scattering"

description: Data for the article "Faster chiral versus collinear magnetic order recovery after optical excitation revealed by femtosecond XUV scattering" (Faster chiral versus collinear magnetic order recovery after optical excitation revealed by femtosecond XUV scattering | Nature Communications) [2002.03971] Chiral versus collinear magnetic order dynamics: faster chiral recovery after optical excitation revealed by femtosecond XUV scattering (arxiv.org)
description: N.K., B.S., K.L., and M.K. gratefully acknowledge financial support by the Graduate School of Excellence Materials Science in Mainz (MAINZ, GSC266) and support from the Max Planck Graduate Center (MPGC). M.K. and the groups in Mainz acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—projects 290319996/TRR173, 403502522/SPP 2137 Skyrmionics and 290396061/TRR173 and the EU (ERC-2019-SyG 3D MAGiC #856538, FET-open s-NEBULA #863155). C.G. acknowledges funding by the Deutsche Forschungsgemeinschaft (DFG)—projects GU 535/4-1 and KS 62/1-1. Y.M. acknowledges funding from the DARPA TEE program through Grant MIPR (No. HR0011831554) from DOI and support from Leibniz Collaborative Excellence project OptiSPIN — Optical Control of Nanoscale Spin Textures. We also gratefully acknowledge the Jülich Supercomputing Center and RWTH Aachen University for providing computational resources under project jiff40. Measurements were carried out at the DiProI beamline at the FERMI FEL facility in Trieste, Italy. We thank FERMI FEL facility for the allocation of the beamtime and the technical support offered during the measurements. We acknowledge Felix Büttner for valuable discussions.