cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14283020.v1
title: The Development of Elementary School Teachers’ Collaborative Practice in a Lesson Study

description: ABSTRACT This paper addresses the process of development of professional collaboration in a lesson study that involved six elementary school teachers of Brazilian state public schools of schools at Rio Grande do Sul, concerning the ‘metro’ as length measure at grade 4. The participants worked collaboratively planning a lesson about this topic. The methodology is qualitative and interpretative, with data collected by audio records of the planning sessions for the pesson and field notes, conversations and interviews carried out with participating teachers. The results show that the professional collaboration that developed during the lesson study was facilitated by the dynamics of the different steps and, especially, by the relation among participants and teacher educators. Collaboration emerged from activities such as planning, and increased with classroom teaching, observation and reflection, especially given the encouragement and strengthening of the group insofar as teachers felt confident, encouraged and welcomed in the group.
DOI: 10.6084/m9.figshare.1368699.v1
title: InputData

description: data used in case study
DOI: 10.6084/m9.figshare.12622838.v1
title: cell line raw IMS data

description: cell line raw data used by SEAM paper
DOI: 10.6084/m9.figshare.680878.v2
title: Risk management in creating value for example, companies in the production of shoes and leather goods

description: This report shows one method of currency risk management to create business value on the basis of enterprises in the manufacturing production of shoes and leather goods. This method is based on the use of CFD contracts to mitigate the risk. Calculations are based on data obtained from the financial statements, as well as some fixed characteristic of the industry and on risk management in this company.
DOI: 10.6084/m9.figshare.3142225.v1
title: Species differentiation in the genus <i>Chara</i> (Charophyceae): considerable phenotypic plasticity occurs within homogenous genetic groups

description: Charophytes are benthic algae with a complex morphology and high phenotypic plasticity. This has led to ambiguities in species delineation. However, until now genetic studies on <i>Chara</i> have been based on samples collected from a restricted geographic range or only included a restricted number of taxa. This may have hindered a general interpretation of the results. We applied barcoding of <i>matK</i>, a rapidly evolving coding section of the plastid genome, in 324 <i>Chara</i> samples collected from 19 countries, in order to test whether the distribution of barcode haplotypes among individuals was consistent with species boundaries as they are currently understood. The phylogenetic tree grouped the 324 <i>Chara</i> individuals, which according to commonly used identification keys represented 29 species, into 12 well-defined groups (i.e. monophyletic morphospecies or groups of morphospecies). Considerable morphological variation occurred within genetically homogeneous groups. This included traits which are commonly used for <i>Chara</i> species determination, such as the length and number of spine cells, the length of stipulodes and bract cells, cortication (tylacanthous, isostichous, aulacanthous and absent cortication), as well as sex differentiation. However, there were also substantial genetic differences among morphologically similar species (e.g. <i>C. virgata</i> – <i>C. globularis – C. connivens</i>). No morphological trait consistently reflected genetic differences. This indicates that morphological traits for specific taxa may serve as diagnostic tools for species delimitation, but that they are not generally suitable for inferring genetic differentiation or phylogenetic relationships. We propose that (i) <i>C. virgata</i> and <i>C. strigosa</i>, (ii) <i>C. liljebladii, C. horrida</i> and <i>C. baltica</i>, and (iii) <i>C. hispida, C. rudis</i> and <i>C. polyacantha</i> are conspecific. Our data also indicate that <i>C. gymnophylla</i> should be divided into tylacanthous forms (which are closely related to <i>C. contraria</i>) and aulacanthous forms (which are related to <i>C. vulgaris</i>).
DOI: 10.5522/04/19845523.v1
title: Atomistic Modeling of the Electrical Conductivity of Single-Walled Carbon Nanotube Junctions

description: A compressed directory containing the data and analysis scripts used generate the main figures in our publication. <br> As described in our publication, the DFTB+NEGF approach is employed to calculate the electrical conductivity of carbon nanotube junction structures. The generated junction structures themselves, along with the template structures used to generate them are available in this archive.
DOI: 10.6084/m9.figshare.16834849.v1
title: 专利类数据集.xlsx

description: We use journal articles published by <i>Scientometrics</i> in 2016-2020 as the data source. Through the analysis of the data set usage records of scientometrics research, the frequency ranking of the usage of each dataset on patent is listed, so as to provide a reference for the selection of data sets for scientometrics research.
DOI: 10.6084/m9.figshare.19130258.v1
title: Ground penetrating radar data from the foreland of the glacier Midtdalsbreen (Norway) in spring 2019.

description: This dataset contains raw ground penetrating radar (GPR) files collected over three sites at the foreland of the glacier Midtdalsbreen (60°34'N 7°27'E) in southern Norway. The GPR data files can be viewed using Reflexw software. Information on data collection is provided in the corresponding observer logs file (GPR_obslogs.xlsx). The data was collected in the spring, when the ground was snow covered.Once processed, this data can reveal structures within glacial landforms and provide information on the electrical properties of the substrates beneath the survey lines.GPR data were collected using a MALÅ system with rough terrain antennas with central frequencies of 25 MHz and 100 MHz. At the Lateral Moraine and Terminal Moraine sites, data were collected along and perpendicular to moraine crests and at the Hummocky Site, data collection was undertaken on a grid. See Watts et al. (2022) for detail on data collection.
DOI: 10.6084/m9.figshare.22793513.v2
title: Supporting files generated during the genome project of Baronia brevicornis from "The genome of the short-horned baronia (Baronia brevicornis), an endangered relict and key lineage in swallowtail butterfly evolution"

description: These files are part of the manuscript:The genome of the short-horned baronia (Baronia brevicornis), an endangered relict and key lineage in swallowtail butterfly evolutionAlba Marino 1,†, Eliette L. Reboud 1†, Emmanuelle Chevalier 1, Marie-Ka Tilak 1, Jorge Contreras-Garduño 2, Benoit Nabholz 1,3† and Fabien L. Condamine 1,*†1 Institut des Sciences de l’Evolution de Montpellier (Université de Montpellier | CNRS | IRD | EPHE), Place Eugène Bataillon, 34095 Montpellier, France2 Universidad Nacional Autónoma de México, Escuela Nacional de Estudios Superiores, campus Morelia, Antigua Carretera a Pátzcuaro #8701, Col. Ex-Hacienda San José de la Huerta, 58190 Morelia, Michoacán, Mexico3 Institut Universitaire de France (IUF), Paris, France† These authors contributed equally.Genome assembly is available here : https://www.ncbi.nlm.nih.gov/nuccore/JASFAT000000000.1/Files descriptions:<br>Baronia_brevicornis_FC897_final_version.fasta_masked.fasta : Masked genome assemblyBaronia_brevicornis_FC897_braker2.gtf : GTF file of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_braker2.codingseq.fasta : CDS of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_braker2.proteins.fasta : Proteins of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_rnd3.all.maker.noseq.gff : GFF3 file of the annotation performed with MAKER pipelineBaronia_brevicornis_FC897_rnd3.all.maker.proteins.fasta : Proteins of the annotation performed with MAKER pipelineBaronia_brevicornis_FC897_rnd3.all.maker.transcripts.fasta : CDS of the annotation performed with MAKER pipelinecreateMaskFile.py is a python script to create mask files for MSMC2. Usage : python3 createMaskFile.py coverage_file.txt 15 100 contig_name output.bed.gz. The coverage_file.txt is create using "samtools depth" program.AlgnRM2Fasta : is a program to extract the alignment of TE sequences with their sequence consensus from RepeatMaskerNucleodite_diversity_coding_sequences_scripts.zip : Script and program compute the synonymous, non-synonymous and four-fold degenerated sites nucleotide diversity
DOI: 10.6084/m9.figshare.25134380.v1
title: Probing the Link between Vision and Language in Material Perception

description: Materials are the building blocks of our surroundings. Material perception enables us to create a vivid mental representation of our environment, allowing us to appreciate the qualities and aesthetics of things around us, and decide how to interact with them. We can visually discriminate and recognize materials and infer their properties, and previous studies have identified diagnostic image features related to visual perception. Meanwhile, language reveals our subjective understanding of visual input and allows us to communicate relevant information about the material. To what extent words encapsulate the visual material perception remains elusive. Here, we used deep generative networks to create an expandable image space that allows us to systematically create and sample stimuli of familiar and unfamiliar materials. We compared the representations of materials from two cognitive tasks: visual material similarity judgments and verbal descriptions. We observed a moderate correlation between vision and language within individuals, but language alone can not fully capture the nuances of material appearance. We further examined the latent code of the generative model and found that image-based representation only exhibited a weak correlation with human vision. Joining image- and semantic-level representations substantially improved the prediction of human perception. Our results imply that material perception involves a semantic understanding of scenes to resolve the ambiguity of visual information and beyond merely relying on image features. This work illustrates the need to consider the vision-language relationship in building a comprehensive model for material perception and other tasks in high-level vision. <b>The raw data from the behavioral tasks can be found here: </b><br>Multiple_arrangement folder: the RDMs from the Multiple Arrangement task.Verbal_description folder: the verbal description provided by the participants.
DOI: 10.6084/m9.figshare.21760505.v1
title: Dataset - Polish mobility patterns

description: Dataset in Polish about the mobility choices of residents of urban, suburban and rural areas (random sample, n=2000), October 2019
DOI: 10.4121/uuid:e780eb4a-b53f-4482-a946-63994a41ef34
title: High-Resolution DTS Temperature Measurements During Fog at Cabauw

description: DTS temperature measurements at the Cabauw site during a field experiment to observe the growth of shallow fog.
DOI: 10.6084/m9.figshare.957632.v1
title: Landmark data for morphoJ

description: These are the post sliding landmark data, formatted for MorphoJ input.
DOI: 10.6084/m9.figshare.28377875.v1
title: 原始分布数据、环境变量和 R 代码

description: This study utilized extensive specimen data and detailed geographic and environmental information, applying the MaxEnt model to predict the distribution of <i>F. cirrhosae</i> bulbus. The key findings are as follows: (1) <i>F. przewalskii</i> and <i>F. delavayi</i> tend to migrate to higher altitudes, while<i> </i><i>F. taipaiensis</i><i> </i>is shifting to lower altitudes. (2) Among different species of <i>F. cirrhosae</i> bulbus, altitude, temperature, and precipitation significantly influence distribution, with altitude being the most critical factor. (3) Under the SSP585 scenario, the suitable areas of <i>F. cirrhosa</i>, <i>F. przewalskii,</i> and <i>F. taipaiensis</i> were contracting, while those of <i>F. unibracteata</i> and<i> </i><i>F. delavayi</i> were rising. Also, the centroids of <i>F. cirrhosa</i> and<i> </i><i>F. przewalskii</i> shifted slightly northeastward, <i>F. unibracteata</i>’s shifted southward, and <i>F. delavayi</i> and <i>F. taipaiensis</i>’s shifted northwestward.
DOI: 10.6084/m9.figshare.13818920.v1
title: DEGRADABILIDAD PRADERA.xlsx

description: The aim was to determine the effect of the HA and supplement type (ST) on dry matter intake, milk production and composition, grazing behaviour, rumen function and blood metabolites of grazing dairy cows in the spring season. Experiment I: 64 Holstein Friesian dairy cows were distributed in a factorial design that tested two levels of daily HA (20 and 30 kg DM/cow.day) and two ST (high moisture maize [HMM] and cracked wheat [CW]) distributed in two daily rations (3.5 kg DM/cow/day). Experiment II: four mid-lactation rumen cannulated cows, supplemented with either HMM or CW and managed with the two HA, were distributed in a Latin Square design of 4 x 4, for four 14-d periods to assess ruminal fermentation parameters.
DOI: 10.6084/m9.figshare.14765640.v1
title: Bonet et al 2021 RNAseq Data Series 1

description: 1ul of an S. coelicolor spore stock was spotted onto a 100x15mm petri dish with 10ml ISP2 agar, resulting in agar approximately 2 mm thick. For interactions, 1ul of an interacting strain was spotted 0.5 cm away from the S. coelicolor spot. S. coelicolor biomass was collected after 5 days of growth at 30°C using a cell scraper. For the patches growing alone, the entire patch was collected and one sample consists of three whole patches combined. For the patches in interactions, only half of the patch, the side closest to the initiator strain, was collected and one sample consists of three half patches. Precaution was taken to not scrape up any of the interacting strain.<br><br>In this data series, <i>S. coelicolor</i> interacted with <i>Streptomyces </i>SPB74, <i>Streptomyces albus </i>J1074, <i>Streptomyces viridochromogenes </i>DSM 40736, and <i>Amycolatopsis </i>AA4.<br><br><i>S. coelicolor</i> colonies grown alone served as the source of control RNA.<br><br>In this data series, RNA counts from <i>S. coelicolor</i> in a given interaction were compared to RNA from the controls (eg. RNA from interacting <i>S. coelicolor</i>/RNA from control <i>S. coelicolor</i> colonies). <br>The Figure_1_dataset_normalized_values.xlsx file contains the normalized log2 ratios for the dataset. The other tabs in this file also contain p values etc for each comparison.
DOI: 10.6084/m9.figshare.26029486.v1
title: Supplementary Material for: Predictors of post-stroke cognitive decline among stroke survivors in Sub-Saharan Africa: A systematic review and meta-analysis

description: Introduction: Stroke is a devastating medical disorder associated with significant morbidity and mortality among adults and the elderly worldwide. Although numerous primary studies have been conducted to determine the pooled predictors of post-stroke cognitive decline among stroke survivors in Sub-Saharan Africa, these studies presented inconsistent findings. Hence, the review aimed to determine the pooled predictors of post-stroke cognitive decline among stroke survivors in Sub-Saharan Africa. 
Methods: The eligible primary studies were accessed through Google Scholar, Scopus, PubMed, and Web of Science databases. A manual search of the reference lists of included studies was performed. A weighted inverse-variance random-effects model was used to determine the pooled predictors of post-stroke cognitive decline among stroke survivors in Sub-Saharan Africa. 
Results: A total of 1,710 stroke survivors from 10 primary studies were included in the final meta-analysis. Increased age (≥45 years) [Adjusted Odds Ratio (AOR)=1.32, 95%CI: 1.13, 1.54], lower educational level [AOR=4.58, 95%CI: 2.98, 7.03], poor functional recovery [AOR=1.75, 95%CI: 1.42, 2.15], and left hemisphere stroke [AOR=4.88, 95%CI: 2.98, 7.99] were significantly associated with post-stroke cognitive decline. 
Conclusions: Increased age, lower educational level, poor functional recovery, and left hemisphere stroke were the pooled independent predictors of post-stroke cognitive decline in Sub-Saharan Africa Healthcare providers and other concerned bodies should give attention to these risk factors as the early identification may help to improve the cognitive profile of stroke survivors.
DOI: 10.6084/m9.figshare.5126251.v1
title: Supplementary Material for: Increased Calcification in Osteoprotegerin-Deficient Smooth Muscle Cells: Dependence on Receptor Activator of NF-κB Ligand and Interleukin 6

description: <b><i>Objective:</i></b> Vascular calcification is highly correlated with cardiovascular disease morbidity and mortality. Osteoprotegerin (OPG) is a secreted decoy receptor for receptor activator of NF-κB ligand (RANKL). Inactivation of OPG in apolipoprotein E-deficient (ApoE-/-) mice increases lesion size and calcification. The mechanism(s) by which OPG is atheroprotective and anticalcific have not been entirely determined. We investigated whether OPG-deficient vascular smooth muscle cells (VSMCs) are more susceptible to mineralization and whether RANKL mediates this process. <b><i>Results:</i></b> Lesion-free aortas from 12-week-old ApoE-/-OPG-/- mice had spotty calcification, an appearance of osteochondrogenic factors and a decrease of smooth muscle markers when compared to ApoE-/-OPG+/+ aortas. In osteogenic conditions, VSMCs isolated from ApoE-/-OPG-/- (KO-VSMC) mice deposited more calcium than VSMCs isolated from ApoE-/-OPG+/+ (WT-VSMC) mice. Gene expression and biochemical analysis indicated accelerated osteochondrogenic differentiation. Ablation of RANKL signaling in KO-VSMCs rescued the accelerated calcification. While WT-VSMCs did not respond to RANKL treatment, KO-VSMCs responded with enhanced calcification and the upregulation of osteochondrogenic genes. RANKL strongly induced interleukin 6 (IL-6), which partially mediated RANKL-dependent calcification and gene expression in KO-VSMCs. <b><i>Conclusions:</i></b> OPG inhibits vascular calcification by regulating the procalcific effects of RANKL on VSMCs and is thus a possible target for therapeutic intervention.
DOI: 10.17633/rd.brunel.8053091.v1
title: Portable compressed binary tCONCOORD trajectory file - 2VN9 A

description: tCONCOORD trajectory
DOI: 10.6084/m9.figshare.11296001.v1
title: C1_C2_16S_rRNA_Iontorrent.zip16s rRNA sequencing data Gnotobiotic mice

description: 14 samples from C1 and C2 colonized mice were sequenced for the V5-V6 region of 16S rRNA genes. 56 samples from C3, C4, C5, C6, OligoMM12, KB1+YL58, YL44+YL58 and YL44+KB1+YL58 colonized mice and 91 samples from young OligoMM12 colonized mice were sequenced for V4 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM platform (V5-V6) and Illumina (V4) platform.14 samples from C1 and C2 colonized mice were sequenced for the V5-V6 region of 16S rRNA genes. 56 samples from C3, C4, C5, C6, OligoMM12, KB1+YL58, YL44+YL58 and YL44+KB1+YL58 colonized mice and 91 samples from young OligoMM12 colonized mice were sequenced for V4 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM platform (V5-V6) and Illumina (V4) platform.
DOI: 10.6084/m9.figshare.26031226.v1
title: Data for Horrocks et al., 2024

description: Data used in Horrocks et al., 2024 (Nature Communications).Please cite the paper if you use this datset.
DOI: 10.6084/m9.figshare.7926503.v2
title: Identifying States of Collateral Sensitivity During the Evolution of Therapy Resistance in Ewing’s Sarcoma Poster for 2019 AACR

description: Two Ewing's sarcoma cell lines were evolved in the standard chemotherapy treatment given to patients. After each dose of chemotherapy treatment, drug sensitivity profiles were captured on each cell line to the individual treatment drugs and new drugs to determine if collateral sensitivity (CS) is present (CS us where evolved resistance to one drug confers sensitivity to another). This data identified potentially more optimal treatment times and chemotherapies than the standard treatment regime.
DOI: 10.6084/m9.figshare.27308562.v2
title: 1.xlsx

description: casqwertyio
DOI: 10.6084/m9.figshare.5756520.v1
title: dataset_minimal.zip

description: A samples IDS dataset
DOI: 10.6084/m9.figshare.11769909.v1
title: Precipitation of Palau

description: Row data of the paper entitled " K factor for soil erosion in Palau should be measured locally"
DOI: 10.6084/m9.figshare.17081522.v1
title: Supplemental_JCEM.docx

description: List of primer sequences
DOI: 10.15131/shef.data.12942776.v1
title: Psychometric data for 'A new quality of life questionnaire for use in Duchenne muscular dystrophy: the DMD-QoL'

description: Research data (DMDQoLPsychometric.csv) collected in an online survey of boys and men with Duchenne muscular dystrophy (DMD) in order to support the psychometric analysis and development of a new quality of life questionnaire in DMD: the DMD-QoL.<br>The research is part of the <i>Producing a preference-based quality of life measure for people with Duchenne muscular dystrophy </i>project and is funded as part of project HERCULES led by Duchenne UK.<br><br>A protocol for the work is available online: Powell et al. (2019), http://dx.doi.org/10.1136/bmjopen-2018-023685<br> All necessary approvals were acquired to use the patient reported outcome measures in this dataset. The research received ethical approval from the UK National Health Service (NHS REC reference: 18/SW/0055). <br><br>An associated data dictionary (dataDictionaryDMDQoLPsychometric.docx) is provided.
DOI: 10.6084/m9.figshare.23514720.v1
title: 1-1 National - WG market share.json

description: 1-1 National - WG market share.json
DOI: 10.6084/m9.figshare.12337658.v1
title: Supplementary Material for: Association between Posttransplant Opioid Use and Immunosuppressant Therapy Adherence among Renal Transplant Recipients

description: <b><i>Introduction:</i></b> Little is known about the effect of posttransplant opioid use on adherence to immunosuppressant therapy (IST) among adult renal transplant recipients (RTRs). <b><i>Objective:</i></b> The aim of this study was to examine the relationship between opioid use and IST adherence among adult RTRs during the first year posttransplant. <b><i>Methods:</i></b> Longitudinal data were analyzed from a retrospective cohort study examining US veterans undergoing renal transplant from October 1, 2007, through March 31, 2015. Data were collected from the US Renal Data System, Centers for Medicare and Medicaid Services Data (Medicare Part D), and Veterans Affairs pharmacy records. Dose of opioid prescriptions was collected and divided based on annual morphine milligram equivalent within a year of transplant. Proportion of days covered of greater than or equal to 80% indicated adherence to tacrolimus. Unadjusted and multivariable-adjusted logistic regression analyses were performed. <b><i>Results:</i></b> A study population of 1,229 RTRs included 258 with no opioid use, while 971 opioid users were identified within the first year after transplantation. Compared to RTRs without opioid usage, RTRs with opioid usage had a lower probability of being adherent to tacrolimus in unadjusted logistic regression (odds ratio [OR] (95% confidence interval [CI]): 0.22 [0.07–0.72]) and adjusted logistic regression (OR [95% CI]: 0.11 [0.03–0.44]). These patterns generally remained consistent in unadjusted and adjusted main and sensitivity analyses. <b><i>Conclusions:</i></b> Findings indicate RTRs who use prescription opioids during the first year posttransplant, regardless of the dosage/amount, are less likely to be adherent to tacrolimus. Future studies are needed to better understand underlying causes of the association between opioid use and tacrolimus nonadherence.