cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17152952
title: Immunity to stripe rust in wheat: A case study of a hypersensitive-response (HR)- independent resistance to Puccinia striiformis f. sp. tritici in Avocet-Yr15

description: Stripe (yellow) rust, caused by the biotrophic fungal pathogen <i>Puccinia striiformis</i> f. sp. <i>tritici</i> (Pst), is emerging as a serious threat to wheat (<i>Triticum aestivum</i> L.) production in many regions of North America. Genetic resistance to stripe rust is typically conditioned by the products of resistance genes that detect pathogen-associated molecular patterns and initiate a cascade of signalling events, culminating in the generation of reactive oxygen species (ROS) and a hypersensitive response (HR) that eventually suppress the pathogen. Complete resistance with no symptoms (immunity response) has also been observed, but less frequently, in certain Pst-wheat interactions. However, such HR-independent resistance responses to Pst have not been well studied. Here we report that the Pst-resistant near isogenic line Avocet-<i>Yr15</i> (carrying the <i>Yr15</i> resistance gene) exhibited an immunity response to an isolate of Pst collected in Elora, Ontario, while the Avocet-S line (lacking <i>Yr15</i>) was highly susceptible to the same isolate. In particular, histochemical assays of defence-associated ROS generation and HR were negative during the early stages of the interaction between Pst and the resistant Avocet-<i>Yr15</i>. Microscopic analysis indicated that the pathogen was not able to penetrate the stomata of Avocet-<i>Yr15</i>. Moreover, RNA-sequencing of the immunity response of Avocet-<i>Yr15</i> to Pst highlighted the activation of a global anti-oxidative-stress response consisting of genes involved in the maintenance of cell viability, redox homoeostasis and photosynthesis. These results provide insights into the molecular mechanisms controlling the immunity response to stripe rust of wheat.
DOI: 10.6084/m9.figshare.16817488
title: Mapping quantitative trait loci associated with stripe rust resistance from the Canadian wheat cultivar ‘AAC Innova’

description: Stripe rust, caused by <i>Puccinia striiformis</i> Westend. f.sp. <i>tritici</i> Erikss. (<i>Pst</i>), is one of the most devastating diseases of wheat (<i>Triticum aestivum</i> L.) globally. Exploring and utilizing new sources of resistance is essential for breeding resistant wheat cultivars. Thus, a doubled haploid population (n = 291) derived from the cross ‘AAC Innova’/‘AAC Proclaim’ was evaluated to dissect the genetics of resistance in the cultivar ‘AAC Innova’. This population was evaluated for stripe rust severity in disease nurseries at Creston, British Columbia (in 2016 and 2020), and Lethbridge, Alberta (in 2016, 2017 and 2020), and genotyped using the wheat 90 K SNP assay. A high-density genetic map was constructed which consisted of 7112 SNP markers with an average marker interval of 2.3 cM. Quantitative trait loci (QTL) mapping identified one major (<i>QYr.lrdc-2A</i>) and 10 minor effect (<i>QYr.lrdc-2B.1, QYr.lrdc-2B.2, QYr.lrdc-2B.3, QYr.lrdc-2B.4, QYr.lrdc-2D, QYr.lrdc-3B, QYr.lrdc-5A, QYr.lrdc-5B, QYr.lrdc-5D</i> and <i>QYr.lrdc-7D</i>) loci. The QTL <i>QYr.lrdc-2A</i> was consistently effective against <i>Pst</i> races across all environments and explained up to 33.0% of the phenotypic variation. Other QTLs were either less consistent or environment specific. ‘AAC Innova’ contributed stripe rust resistance alleles for most of the QTLs except for <i>QYr.lrdc-2D, QYr.lrdc-5A and QYr.lrdc-7D</i>. The QTLs identified in this study should be valuable for diversifying the sources of genetic resistance against current and new virulent races of <i>Pst</i>. In particular, the ‘AAC Innova’-derived QTL <i>QYr.lrdc-2A</i> could be a valuable source of resistance to incorporate into commercial cultivars and combine with other genes using the associated SNP markers identified in this study.
DOI: 10.6084/m9.figshare.14616896.v2
title: Infection and colonization of triticale by <i>Puccinia graminis</i> f. sp. <i>tritici</i>

description: Histological investigations elucidate infection structure development and the subsequent colonization process of rust pathogens in their cereal hosts. No comprehensive information exists for the infection process of the wheat stem rust fungus, <i>Puccinia graminis</i> f. sp. <i>tritici</i> (<i>Pgt</i>), on triticale, an amphiploid species carrying both the wheat and rye genomes. The adult plant stem rust response of the triticale cultivars ‘Kiewiet’, ‘Coorong’ and ‘Satu’ and the bread wheat control, Line 37–07, was determined under controlled conditions using <i>Pgt</i> pathotypes UVPgt56, UVPgt60 and UVPgt62. Flag leaf sheaths were sampled 24 and 48 h post-inoculation (hpi) for scanning electron microscopy (SEM), 120 hpi for fluorescence microscopy, and 16 days post-inoculation for a fungal biomass assay. Although slight differences were observed between the epidermal morphology of triticale and wheat stem sheaths, SEM results indicated that this did not influence early infection by <i>Pgt</i>. Fluorescence microscopy revealed that colony size was affected by both host genotype and pathotype. Colony size strongly corresponded with fungal biomass accumulation, except in ‘Kiewiet’, where fungal growth was not restricted to the same degree as in other incompatible interactions. This study shows that methods commonly used for studying histopathology of <i>Pgt</i> in wheat are equally applicable to triticale.
DOI: 10.6084/m9.figshare.16817488.v1
title: Mapping quantitative trait loci associated with stripe rust resistance from the Canadian wheat cultivar ‘AAC Innova’

description: Stripe rust, caused by <i>Puccinia striiformis</i> Westend. f.sp. <i>tritici</i> Erikss. (<i>Pst</i>), is one of the most devastating diseases of wheat (<i>Triticum aestivum</i> L.) globally. Exploring and utilizing new sources of resistance is essential for breeding resistant wheat cultivars. Thus, a doubled haploid population (n = 291) derived from the cross ‘AAC Innova’/‘AAC Proclaim’ was evaluated to dissect the genetics of resistance in the cultivar ‘AAC Innova’. This population was evaluated for stripe rust severity in disease nurseries at Creston, British Columbia (in 2016 and 2020), and Lethbridge, Alberta (in 2016, 2017 and 2020), and genotyped using the wheat 90 K SNP assay. A high-density genetic map was constructed which consisted of 7112 SNP markers with an average marker interval of 2.3 cM. Quantitative trait loci (QTL) mapping identified one major (<i>QYr.lrdc-2A</i>) and 10 minor effect (<i>QYr.lrdc-2B.1, QYr.lrdc-2B.2, QYr.lrdc-2B.3, QYr.lrdc-2B.4, QYr.lrdc-2D, QYr.lrdc-3B, QYr.lrdc-5A, QYr.lrdc-5B, QYr.lrdc-5D</i> and <i>QYr.lrdc-7D</i>) loci. The QTL <i>QYr.lrdc-2A</i> was consistently effective against <i>Pst</i> races across all environments and explained up to 33.0% of the phenotypic variation. Other QTLs were either less consistent or environment specific. ‘AAC Innova’ contributed stripe rust resistance alleles for most of the QTLs except for <i>QYr.lrdc-2D, QYr.lrdc-5A and QYr.lrdc-7D</i>. The QTLs identified in this study should be valuable for diversifying the sources of genetic resistance against current and new virulent races of <i>Pst</i>. In particular, the ‘AAC Innova’-derived QTL <i>QYr.lrdc-2A</i> could be a valuable source of resistance to incorporate into commercial cultivars and combine with other genes using the associated SNP markers identified in this study.
DOI: 10.6084/m9.figshare.14616896
title: Infection and colonization of triticale by <i>Puccinia graminis</i> f. sp. <i>tritici</i>

description: Histological investigations elucidate infection structure development and the subsequent colonization process of rust pathogens in their cereal hosts. No comprehensive information exists for the infection process of the wheat stem rust fungus, <i>Puccinia graminis</i> f. sp. <i>tritici</i> (<i>Pgt</i>), on triticale, an amphiploid species carrying both the wheat and rye genomes. The adult plant stem rust response of the triticale cultivars ‘Kiewiet’, ‘Coorong’ and ‘Satu’ and the bread wheat control, Line 37–07, was determined under controlled conditions using <i>Pgt</i> pathotypes UVPgt56, UVPgt60 and UVPgt62. Flag leaf sheaths were sampled 24 and 48 h post-inoculation (hpi) for scanning electron microscopy (SEM), 120 hpi for fluorescence microscopy, and 16 days post-inoculation for a fungal biomass assay. Although slight differences were observed between the epidermal morphology of triticale and wheat stem sheaths, SEM results indicated that this did not influence early infection by <i>Pgt</i>. Fluorescence microscopy revealed that colony size was affected by both host genotype and pathotype. Colony size strongly corresponded with fungal biomass accumulation, except in ‘Kiewiet’, where fungal growth was not restricted to the same degree as in other incompatible interactions. This study shows that methods commonly used for studying histopathology of <i>Pgt</i> in wheat are equally applicable to triticale.
DOI: 10.6084/m9.figshare.17174894
title: Supplementary Material for: Weight Changes in Type 2 Diabetes and Cancer Risk: A Latent Class Trajectory Model Study

description: <b><i>Introduction:</i></b> Body mass index (BMI) is often elevated at type 2 diabetes (T2D) diagnosis. Using latent class trajectory modelling (LCTM) of BMI, we examined whether weight loss after diagnosis influenced cancer incidence and all-cause mortality. <b><i>Methods:</i></b> From 1995 to 2010, we identified 7,708 patients with T2D from the Salford Integrated Record database (UK) and linked to the cancer registry for information on obesity-related cancer (ORC), non-ORC; and all-cause mortality. Repeated BMIs were used to construct sex-specific latent class trajectories. Hazard ratios (HRs) and 95% confidence intervals (CIs) were estimated using Cox regression models. <b><i>Results:</i></b> Four sex-specific BMI classes were identified; stable-overweight, stable-obese, obese-slightly-decreasing, and obese-steeply-decreasing; comprising 41%, 45%, 13%, and 1% of women, and 45%, 37%, 17%, and 1% of men, respectively. In women, the stable-obese class had similar ORC risks as the obese-slightly-decreasing class, whereas the stable-overweight class had lower risks. In men, the obese-slightly-decreasing class had higher risks of ORC (HR = 1.86, 95% CI: 1.05–3.32) than the stable-obese class, while the stable-overweight class had similar risks No associations were observed for non-ORC. Compared to the stable-obese class, women (HR = 1.60, 95% CI: 0.99–2.58) and men (HR = 2.37, 95% CI: 1.66–3.39) in the obese-slightly-decreasing class had elevated mortality. No associations were observed for the stable-overweight classes. <b><i>Conclusion:</i></b> Patients who lost weight after T2D diagnosis had higher risks for ORC (in men) and higher all-cause mortality (both genders) than patients with stable obesity.
DOI: 10.25721/1xcb-jv34
title: Valse "Fleur de Paris"
DOI: 10.6084/m9.figshare.16752211
title: Supplementary Material for: A biomimetic combination of actives enhances skin hydration and barrier function via modulation of gene expression - Results of two double-blind, vehicle-controlled clinical studies

description: Medicine
DOI: 10.5281/zenodo.5776058
title: The excess of cool supergiants from contemporary stellar evolution models defies the metallicity-independent Humphreys-Davidson limit

description: Input files and simulation results for stellar evolution tracks computed for the paper "The excess of cool supergiants from contemporary stellar evolution models defies the metallicity-independent Humphreys-Davidson limit", as well as synthetic populations generated and catalogues of observed cool supergiants in the Magellanic Clouds used in the analysis. Version 10398 of MESA was used for the simulations. More details in the README.txt file and in the paper.
DOI: 10.5281/zenodo.5776057
title: The excess of cool supergiants from contemporary stellar evolution models defies the metallicity-independent Humphreys-Davidson limit

description: Input files and simulation results for stellar evolution tracks computed for the paper "The excess of cool supergiants from contemporary stellar evolution models defies the metallicity-independent Humphreys-Davidson limit", as well as synthetic populations generated and catalogues of observed cool supergiants in the Magellanic Clouds used in the analysis. Version 10398 of MESA was used for the simulations. More details in the README.txt file and in the paper.
DOI: 10.25721/syx3-zq71
title: Bourrée "La crouzade"
DOI: 10.25721/3at6-8473
title: Commentaires sur un cliché de mariage de 1929 où figure un accordéoniste
DOI: 10.5281/zenodo.5776173
title: SST Anomalies

description: SST anomalies for GEV testing
DOI: 10.5281/zenodo.5776172
title: SST Anomalies

description: SST anomalies for GEV testing
DOI: 10.5281/zenodo.5776186
title: Effect of Substrates and Thermal Treatments on Metalorganic Chemical Vapor Deposition-Grown Sb2Te3 Thin Films (data)

description: This dataset contains the raw data files connected with the figures included in the paper "<em>Effect of Substrates and Thermal Treatments on Metalorganic Chemical Vapor Deposition-Grown Sb<sub>2</sub>Te<sub>3</sub> Thin Films</em>" by M. Rimoldi et al., <em>Cryst. Growth Des.</em> 2021, 21, 9, 5135–5144 Note for users: The data in Figure 10 can be retrieved from Table 2 in the main text.
DOI: 10.5281/zenodo.5776185
title: Effect of Substrates and Thermal Treatments on Metalorganic Chemical Vapor Deposition-Grown Sb2Te3 Thin Films (data)

description: This dataset contains the raw data files connected with the figures included in the paper "<em>Effect of Substrates and Thermal Treatments on Metalorganic Chemical Vapor Deposition-Grown Sb<sub>2</sub>Te<sub>3</sub> Thin Films</em>" by M. Rimoldi et al., <em>Cryst. Growth Des.</em> 2021, 21, 9, 5135–5144 Note for users: The data in Figure 10 can be retrieved from Table 2 in the main text.
DOI: 10.6084/m9.figshare.17178524
title: Data for CS experiment

description: Data for code-switching priming experiment:- participant background data- baseline experiment data- priming experiment data
DOI: 10.6084/m9.figshare.17170988.v1
title: Geochemistry data for Cenozoic Cambodia rocks

description: This is a data file for research work "Mantle plume-stagnant slab interaction controls the generation of a mixed mantle source for continental intraplate basalts". The data file contains descriptions of samplings, major/trace and radiogenic isotopic data of basalt samples from Cambodia.
DOI: 10.6084/m9.figshare.17170988
title: Geochemistry data for Cenozoic Cambodia rocks

description: This is a data file for research work "Mantle plume-stagnant slab interaction controls the generation of a mixed mantle source for continental intraplate basalts". The data file contains descriptions of samplings, major/trace and radiogenic isotopic data of basalt samples from Cambodia.
DOI: 10.25646/9425
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.16949838.v1
title: Prevalence, risk factors and outcome of Mycoplasma pneumoniae infection among children in Uganda: a prospective study

description: : Atypical bacteria cause 10–40% of all childhood pneumonia.. Data on the burden of atypical pneumonia in sub-Saharan Africa are limited. : To determine the prevalence, associated factors, and outcome of <i>Mycoplasma pneumoniae</i> infection in children with respiratory symptoms at Mulago National Referral Hospital, Kampala. : Children aged 2 months to 12 years with cough and/or difficult breathing and fast breathing were recruited. A clinical history and physical examination were undertaken. Blood samples for <i>Mycoplasma pneumoniae</i> IgM antibodies were taken at enrolment and Day 21 and induced sputum for DNA-PCR. Admitted participants were followed for a maximum of 7 days or until discharge or death, whichever came first. : A total of 385 children were enrolled, and, of these, 368 (95.6%) were &lt;5 years. Overall, 60/385 (15.6%) participants tested positive for <i>M. pneumoniae</i> IgM and/or DNA-PCR. Of these, 56/60 (93.3%) were &lt;5 years of age. Wheezing was present in 21/60 (35.0%) of the children with atypical pneumonia and in 128/325 (39.4%) with typical pneumonia. The factors associated with <i>M. pneumonia</i> were female sex (AOR 1.94, 95% CI 1.22–3.08, <i>p</i> p = 0.01) and a history of prematurity (AOR 2.07, 95% CI 1.23–3.49, <i>p</i> = 0.01). Mortality was 17/352 (4.8%) and, of these, 4/17 (23.5%) had <i>M. pneumonia</i>. : <i>M. pneumonia</i> is common in young children , especially females above 2 years and those with history of prematurity. It presents with severe symptoms. The results of the study highlight the importance of considering atypical bacteria in under-5s with the symptoms of pneumonia.
DOI: 10.6084/m9.figshare.16949838
title: Prevalence, risk factors and outcome of Mycoplasma pneumoniae infection among children in Uganda: a prospective study

description: : Atypical bacteria cause 10–40% of all childhood pneumonia.. Data on the burden of atypical pneumonia in sub-Saharan Africa are limited. : To determine the prevalence, associated factors, and outcome of <i>Mycoplasma pneumoniae</i> infection in children with respiratory symptoms at Mulago National Referral Hospital, Kampala. : Children aged 2 months to 12 years with cough and/or difficult breathing and fast breathing were recruited. A clinical history and physical examination were undertaken. Blood samples for <i>Mycoplasma pneumoniae</i> IgM antibodies were taken at enrolment and Day 21 and induced sputum for DNA-PCR. Admitted participants were followed for a maximum of 7 days or until discharge or death, whichever came first. : A total of 385 children were enrolled, and, of these, 368 (95.6%) were &lt;5 years. Overall, 60/385 (15.6%) participants tested positive for <i>M. pneumoniae</i> IgM and/or DNA-PCR. Of these, 56/60 (93.3%) were &lt;5 years of age. Wheezing was present in 21/60 (35.0%) of the children with atypical pneumonia and in 128/325 (39.4%) with typical pneumonia. The factors associated with <i>M. pneumonia</i> were female sex (AOR 1.94, 95% CI 1.22–3.08, <i>p</i> p = 0.01) and a history of prematurity (AOR 2.07, 95% CI 1.23–3.49, <i>p</i> = 0.01). Mortality was 17/352 (4.8%) and, of these, 4/17 (23.5%) had <i>M. pneumonia</i>. : <i>M. pneumonia</i> is common in young children , especially females above 2 years and those with history of prematurity. It presents with severe symptoms. The results of the study highlight the importance of considering atypical bacteria in under-5s with the symptoms of pneumonia.
DOI: 10.6084/m9.figshare.17179136
title: Directions for Stimulating Digitalization in the Agricultural Sector of the Russian Economy

description: This dataset presents expanded data on the digitalization of the agricultural sector in the Russian Federation.<br><br>
DOI: 10.6084/m9.figshare.17179136.v1
title: Directions for Stimulating Digitalization in the Agricultural Sector of the Russian Economy

description: This dataset presents expanded data on the digitalization of the agricultural sector in the Russian Federation.<br><br>
DOI: 10.34740/kaggle/dsv/2921800
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.15468/zgdp88
title: A new phosphatized ophiuroid from the lower Triassic of Nevada and its position in the evolutionary history of the Ophiuroidea (Echinodermata)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Thuy, Ben, Maxwell, Vivienne, Pruss, Sara B. (2021): A new phosphatized ophiuroid from the lower Triassic of Nevada and its position in the evolutionary history of the Ophiuroidea (Echinodermata). Zootaxa 5071 (3): 369-383, DOI: https://doi.org/10.11646/zootaxa.5071.3.4
DOI: 10.5281/zenodo.5775217
title: Cyanopsitta spixii decontaminated gx

description: .
DOI: 10.5281/zenodo.5775216
title: Cyanopsitta spixii decontaminated gx

description: .
DOI: 10.5281/zenodo.5776310
title: Mutation and methylation data for study: Assessment of the molecular heterogeneity of E-cadherin expression in invasive lobular breast cancer

description: Processed mutation data and DNA methylation beta values published with this study.
DOI: 10.5281/zenodo.5776309
title: Mutation and methylation data for study: Assessment of the molecular heterogeneity of E-cadherin expression in invasive lobular breast cancer

description: Processed mutation data and DNA methylation beta values published with this study.
DOI: 10.15468/zw4tzq
title: Two new species of Pyrgulopsis Call & Pilsbry, 1886 (Mollusca: Caenogastropoda: Hydrobiidae) from springs in the Rio Grande watershed in Texas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Perez, Kathryn E., Leal, Manuel Spor, Glover, Houston, Chastain, Rebecca T., Hutchins, Benjamin T., Schwartz, Benjamin (2021): Two new species of Pyrgulopsis Call & Pilsbry, 1886 (Mollusca: Caenogastropoda: Hydrobiidae) from springs in the Rio Grande watershed in Texas. Zootaxa 5071 (3): 384-402, DOI: https://doi.org/10.11646/zootaxa.5071.3.5
DOI: 10.34740/kaggle/dsv/2921836
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.17175167
title: Supplementary Material for: Value of Radiomics of Perinephric Fat for Prediction of Intraoperative Complexity in Renal Tumor Surgery

description: <b><i>Introduction:</i></b> The aim of this study was to assess the value of computed tomography (CT)-based radiomics of perinephric fat (PNF) for prediction of surgical complexity. <b><i>Methods:</i></b> Fifty-six patients who underwent renal tumor surgery were included. Radiomic features were extracted from contrast-enhanced CT. Machine learning models using radiomic features, the Mayo Adhesive Probability (MAP) score, and/or clinical variables (age, sex, and body mass index) were compared for the prediction of adherent PNF (APF), the occurrence of postoperative complications (Clavien-Dindo Classification ≥2), and surgery duration. Discrimination performance was assessed by the area under the receiver operating characteristic curve (AUC). In addition, the root mean square error (RMSE) and <i>R</i><sup>2</sup> (fraction of explained variance) were used as additional evaluation metrics. <b><i>Results:</i></b> A single feature logit model containing “Wavelet-LHH-transformed GLCM Correlation” achieved the best discrimination (AUC 0.90, 95% confidence interval [CI]: 0.75–1.00) and lowest error (RMSE 0.32, 95% CI: 0.20–0.42) at prediction of APF. This model was superior to all other models containing all radiomic features, clinical variables, and/or the MAP score. The performance of uninformative benchmark models for prediction of postoperative complications and surgery duration were not improved by machine learning models. <b><i>Conclusion:</i></b> Radiomic features derived from PNF may provide valuable information for preoperative risk stratification of patients undergoing renal tumor surgery.