cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h8gh3/1
title: AtenuisGBR_Dryad_Data

description: The file contains one ReadMe and two data sheets. The first data sheet is the microsatellite dataset comprising ten loci for 2014 colonies of Acropora tenuis from 54 sites sampled throughout the Great Barrier Reef. Each colony has a unique multi-locus genotype. The second data sheet is a microsatellite dataset of the same 10 loci for 708 individuals of A. tenuis sampled from six sites in the Palm Islands. Each data set also includes the latitude and longitude of each sampled colony used in the TESS analyses. Each line in each dataset represents an individual colony and some colonies are present in both datasets and these have the same colonyID. The columns in each dataset are ordered as follows; colonyID, siteID, alleles 1 and 2 of each of the 10 microsatellite loci, longitude and latitude. The sampling data are summarised Table 1 of the supplementary online material associated with the publication in Molecular Ecology.
DOI: 10.5061/dryad.j9j02/1
title: Life-history traits of the virulent and avirulent lineages
DOI: 10.5061/dryad.j9j02/2
title: Virulence level of the different G. pallida lineages
DOI: 10.5061/dryad.jr107/1
title: Microsatellite sequences Buteo buteo

description: Year of sampling, microsatellite sequences and morph of individual of Buteo buteo
DOI: 10.5061/dryad.kt70b/1
title: Microsatellite genotypes for Pseudemoia spp
DOI: 10.5061/dryad.kt70b/3
title: Morphological measurements of Pseudemoia spp.
DOI: 10.5061/dryad.kt70b/4
title: Microhabitat data for Pseudemoia spp.
DOI: 10.5061/dryad.n2606/1
title: PGENETICS-D-15-02479R1-DATA

description: This directory contains four input files on which PhyloNet can be run to conduct the Bayesian analyses reported in the paper for the four data sets (the wheat data set, the mouse data set, the mosquito autosome data set, and the mosquito X chromosome data set).
DOI: 10.5061/dryad.qt48g/1
title: Kinematic and forleimb EMG data of toads landing asymmetrically
DOI: 10.5061/dryad.qt48g/2
title: Digitized points from high speed video of toads landing asymmetrically
DOI: 10.5061/dryad.qt48g/3
title: EMG data from m.anconeus of cane toads during hops with asymmetric landings

description: Complied EMG data for each toad for each hop from the m. anconeus muscle of the forelimb during hops with asymmetric landings.  For further details see the readMe
DOI: 10.5061/dryad.qt48g/4
title: Which EMG trace numbers correspond to which muscles
DOI: 10.5061/dryad.qt48g/5
title: Matlab file with gui used to do calculations

description: Matlab file with gui used to complie data, do calculations and provide a user interface to identify hop events
DOI: 10.5061/dryad.r6t26/1
title: Imputed and non imputed genotypes

description: Sample list and characteristics, imputed and non imputed vcf files. "h2dom.tar.gz" contains 3 files: sample.txt contains sample description (also below); countries are ISO codes.all.gt.vcf.gz contains vcf file with all and phased imputed SNPs.all.vcf.gz contains merged vcf file with all non imputed SNPs as missing (./.)
DOI: 10.5061/dryad.sh565/1
title: Behavioural tinnitus distress data (TRQ)

description: This spreadsheet contain the 5 recording session data from 12 tinnitus subjects.
DOI: 10.5061/dryad.sh565/2
title: READ ME
DOI: 10.5061/dryad.sh565/3
title: T1 - tinnitus subject 1

description: Magnetoencephalography files for tinnitus subject 1.
DOI: 10.5061/dryad.sh565/4
title: T2 - tinnitus subject 2

description: Magnetoencephalography files for tinnitus subject 2.
DOI: 10.5061/dryad.sh565/5
title: T3 - tinnitus subject 3

description: Magnetoencephalography files for tinnitus subject 3.
DOI: 10.5061/dryad.sh565/6
title: T4 - tinnitus subject 4

description: Magnetoencephalography files for tinnitus subject 4.
DOI: 10.5061/dryad.t83n1/1
title: Ant visitation on cerrado plants in Uberlândia, Minas Gerais, Southeastern Brazil

description: Samplings were performed in field during the rainy (October 4, 2010 – January 27, 2011) and dry season (April 25 – July 26, 2011)
DOI: 10.5061/dryad.0m9n7/18
title: S5_File: 3D image stack of PC346c cancer spheroids in co-culture with CAFs, treated with MDV, well F05, field 4

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of PC346c prostate cancer cells (a cell line obtained from the Erasmus Medical Center, via the PREDECT consortium) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/19
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A05, field 1, stack 333

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/20
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A05, field 2, stack 334

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/21
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A05, field 3, stack 335

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/22
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A05, field 4, stack 336

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/23
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A07, field 1, stack 337

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/24
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A07, field 2, stack 338

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.16mg6/1
title: Sanger_alignment_LONG

description: Sanger sequence alignment_LONG.nex is the “alignment LONG”, which comprises full (or partial but long) cytb sequences, including outgroups.
DOI: 10.5061/dryad.16mg6/2
title: Sanger_alignment_FULL

description: Sanger sequence alignment_FULL.nex is the “alignment FULL”, which comprises all cytb sequences, including outgroups. The sequences in “alignment LONG” are included in this alignment. Note also that several sequences &lt;200 bp long are included here, which are not deposited at GenBank, due to their policy on sequence length.
DOI: 10.5061/dryad.16mg6/3
title: RAD_all_datasets_vcf_base

description: RAD_all_datasets_vcf_base.tar is an archive containing the basic SNP datasets FRESH, MUSEUM, DAAROODENSIS, and ERLANGERI (before genomic subsetting) in vcf format. See the ReadMe file for more information.
DOI: 10.5061/dryad.16mg6/4
title: RAD_all_datasets_vcf_thinned

description: RAD_all_datasets_vcf_thinned.tar is an archive containing the genomically subsetted SNP datasets FRESH, MUSEUM, DAAROODENSIS, and ERLANGERI in vcf format. The dataset FRESH (with and without outgroup) has first been divided into three non-overlapping genomic subsets (every third SNP; pos1–3), which has then been thinned to retain SNPs at a minimum physical distance (according to the interspecific mapping) of 50 Kbp. The remaining datasets have only been thinned to retain SNPs at a minimum distance of 10 Kbp. See the ReadMe file for more information.
DOI: 10.5061/dryad.3pb86/1
title: streaked_shearwater_no1

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/10
title: streaked_shearwater_no13

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/2
title: streaked_shearwater_no2

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/3
title: streaked_shearwater_no3

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/4
title: streaked_shearwater_no4

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/5
title: streaked_shearwater_no5

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/6
title: streaked_shearwater_no6

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/7
title: streaked_shearwater_no7

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/8
title: streaked_shearwater_no11

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/9
title: streaked_shearwater_no12

description: time series of latitude and longitude
DOI: 10.5061/dryad.4m402/2
title: Species-tree analysis (NJst) dataset (Fig. 4, B)

description: Bootstrap tree files used to infer tree and support values in Fig. 4, B.
DOI: 10.5061/dryad.4m402/3
title: Concatenated analysis (RAxML) dataset used in Fig. 3.

description: PHYLIP file used to infer tree and support values depicted in Fig. 3.
DOI: 10.5061/dryad.4m402/4
title: Concatenated analysis (RAxML) dataset used in Fig. 4, A.

description: PHYLIP file used to infer tree and support values depicted in Fig. 4, A.
DOI: 10.5061/dryad.4m402/5
title: Concatenated analysis (RAxML) dataset used in Fig. S1.

description: PHYLIP file used to infer tree and support values depicted in Fig. S1.
DOI: 10.5061/dryad.4m402/6
title: Concatenated analysis (RAxML) dataset used in Fig. S2.

description: PHYLIP file used to infer tree and support values depicted in Fig. S2.
DOI: 10.5061/dryad.6bp92/2
title: Prevalence Data

description: Prevalence of Bd in tungara frog populations in Panama from 2009 to 2014 in Panama in tungara frogs (z.e.= zoospore equivalents)
DOI: 10.5061/dryad.6jg71/16
title: figureS3-10

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/17
title: figureS3-11

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/18
title: figureS3-12

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/19
title: figureS3-13

description: SUPPLEMENTARY MATERIALS S1. – Set of Euler/X toolkit input data files for all alignments produced in the Prim-UC (Figs. 1, 3–7, S3 1–13). Each file is saved is saved in .txt format and contains annotations and instructions for run commands to yield the alignments and visualizations shown in the 19 corresponding figures.
DOI: 10.5061/dryad.6jg71/20
title: figure1_mir

description: SUPPLEMENTARY MATERIALS S2. – Set of Euler/X toolkit output Maximally Informative Relations (MIR) for the input data files provided in the Supplementary Materials S1 and for the entire Prim-UC ("primates-all.csv"). Each output file is saved in .csv format. The MIR files form the basis for analyses of name:meaning relations (Tables 3–5).
DOI: 10.5061/dryad.6jg71/21
title: figure3_mir

description: SUPPLEMENTARY MATERIALS S2. – Set of Euler/X toolkit output Maximally Informative Relations (MIR) for the input data files provided in the Supplementary Materials S1 and for the entire Prim-UC ("primates-all.csv"). Each output file is saved in .csv format. The MIR files form the basis for analyses of name:meaning relations (Tables 3–5).
DOI: 10.5061/dryad.6jg71/22
title: figure4_mir

description: SUPPLEMENTARY MATERIALS S2. – Set of Euler/X toolkit output Maximally Informative Relations (MIR) for the input data files provided in the Supplementary Materials S1 and for the entire Prim-UC ("primates-all.csv"). Each output file is saved in .csv format. The MIR files form the basis for analyses of name:meaning relations (Tables 3–5).
DOI: 10.5061/dryad.6jg71/24
title: figure6_mir

description: SUPPLEMENTARY MATERIALS S2. – Set of Euler/X toolkit output Maximally Informative Relations (MIR) for the input data files provided in the Supplementary Materials S1 and for the entire Prim-UC ("primates-all.csv"). Each output file is saved in .csv format. The MIR files form the basis for analyses of name:meaning relations (Tables 3–5).
DOI: 10.5061/dryad.82f5q/1
title: WSMV disease scores raw data

description: Lines were originally scored in 2002 for response to natural infection by WSMV at Hays, KS USA and Sidney, NE USA (Divis et al., 2006). Visual subjective assessment of the degree of chlorosis and plant stunting were used (Table 1 and footnotes). Selected lines were further evaluated in the field at the University of Nebraska Agricultural Research and Development Center, Mead, NE. In 2011 individual spikes from each line were harvested and used to seed at least 20, 1.2 m replicate rows of single plant-derived lines in September 2011 as a block surrounded by early planted wheat that served as a ‘green bridge’ for the development of WCM populations. Multiple plantings of the resistant cultivar Mace and the susceptible line Tomahawk were included as a control
DOI: 10.5061/dryad.82f5q/2
title: PCR gels of markers in TableS1 and S2_I

description: First  of two files with images of gels used for scoring.
DOI: 10.5061/dryad.82f5q/3
title: PCR gels of markers in TableS1 and S2_II

description: Second of two files of gel images used for scoring.
DOI: 10.5061/dryad.82f5q/4
title: FISH_Experiment

description: Table with FISH experiments analysed for each line described
DOI: 10.5061/dryad.pt517/1
title: Unstructured Herring Fish Game Results Cornell Spring 2014 Intro to Conservation

description: Student harvest decisions entered during the herring fishing game (in the lecture period of Spring's Cornell 2014 Intro to conservation class) and the corresponding time series of fish biomasses, random variable time series, and in addition the analogous data from the practice game as well. It also includes their responses to survey questions.
DOI: 10.5061/dryad.pt517/2
title: Unstructured Herring Fish Game Results Ithaca College Spring 2014 Principles of Biology

description: Same as above file but the students were in a different course, Ithaca College's, Spring 2014, "Principles of Biology". Please see the README file for the data set "Unstructured Herring Fish Game Results Cornell Spring 2014 Intro to Conservation" for the meaning of the columns.
DOI: 10.5061/dryad.pt517/3
title: Unstructured Herring Fish Game Results Cornell Summer 2014 Graduate Student Science Colloquium

description: Same as above but for students attending the Summer 2014 Graduate Student Science Colloquium, hosted by the physics department at Cornell University. Please see the README file for the data set "Unstructured Herring Fish Game Results Cornell Spring 2014 Intro to Conservation" for the meaning of the columns.
DOI: 10.5061/dryad.pt517/4
title: Age structured Salmon Fish Game Results Cornell Summer 2014 Graduate Student Science Colloquium

description: The results of the students playing the age-structured salmon fishing game at the Cornell 2014 graduate student science colloquium. Please see the README file for the "Age structured Salmon Fish Game Results Cornell Spring 2014 Intro to Conservation" data set for the meaning of the columns
DOI: 10.5061/dryad.pt517/5
title: Age structured Salmon Fish Game Results Cornell Spring 2014 Intro to Conservation
DOI: 10.5061/dryad.pt517/6
title: Age structured Salmon Fish Game Results Ithaca College Spring 2014 Principles of Biology

description: The results from the age structured game in the Ithaca college class. Please see the README file for the "Age structured Salmon Fish Game Results Cornell Spring 2014 Intro to Conservation" data set for the meaning of the columns
DOI: 10.5061/dryad.qt48g/6
title: Matlab file used to compile data from digitized data
DOI: 10.5061/dryad.qt48g/7
title: R markdown file used to do statistics and generate most of the manuscript
DOI: 10.5061/dryad.rb7h0/2
title: LocusInfo

description: The LocusInfo.zip file is a compressed zip file containing a directory with the microsatellite loci for each species.	The the LocusInfo directory contains the microsatellite locus information for the 1096 species for which loci were developed. The loci were from the 1KP project (http://onekp.com) transcriptomes. For some species, there were multiple transcriptomes, either from multiple collections or multiple tissues; these have been combined into a single file for each species.
DOI: 10.5061/dryad.sh565/10
title: T8 - tinnitus subject 8

description: Magnetoencephalography files for tinnitus subject 8.
DOI: 10.5061/dryad.sh565/11
title: T9 - tinnitus subject 9

description: Magnetoencephalography files for tinnitus subject 9.
DOI: 10.5061/dryad.sh565/12
title: T10 - tinnitus subject 10

description: Magnetoencephalography files for tinnitus subject 10.
DOI: 10.5061/dryad.sh565/13
title: T11 - tinnitus subject 11

description: Magnetoencephalography files for tinnitus subject 11.
DOI: 10.5061/dryad.sh565/14
title: T12 - tinnitus subject 12

description: Magnetoencephalography files for tinnitus subject 12.
DOI: 10.5061/dryad.sh565/15
title: Control subjects (10 total)

description: Magnetoencephalography files from 10 normal (non-tinnitus) subjects. 1 MEG session per subject.
DOI: 10.5061/dryad.sh565/7
title: T5 - tinnitus subject 5

description: Magnetoencephalography files for tinnitus subject 5.
DOI: 10.5061/dryad.sh565/8
title: T6 - tinnitus subject 6

description: Magnetoencephalography files for tinnitus subject 6.
DOI: 10.5061/dryad.sh565/9
title: T7 - tinnitus subject 7

description: Magnetoencephalography files for tinnitus subject 7.
DOI: 10.5061/dryad.0m9n7/25
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A07, field 3, stack 339

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/26
title: S4_File: 3D image stack, LNCaP cancer spheroids in co-culture with CAFs, control sample (DMSO), well A07, field 4, stack 340

description: 3D image stack of 3D fluorescent multi-cellular spheroid culture existing out of LNCaP human prostate cancer cells (ATCC, Rockville, USA) and CAF-PF179T human cancer associated fibroblasts (a cell line obtained from the Weizmann Institute, via the PREDECT consortium).
DOI: 10.5061/dryad.0m9n7/27
title: ReadMe

description: The ReadMe file describes the 3D image data contained in this data repository.
DOI: 10.5061/dryad.0m9n7/28
title: S6 File. Spot detection algorithm illustrated on the 3D image stack in S2 File.

description: This is a multi-page tiff file which shows the EdU channel of the 3D image stack in the supplement S2 File, with the EdU positive cells annotated by small spheres. This image can serve as an example result of the spot detection algorithm (3D version). Similar to the image stack in the supplement S2 File, this image stack can be opened with an application such as ImageJ.
DOI: 10.5061/dryad.16mg6/10
title: RAD_datasetFRESH_xml_SNAPP_ingroup

description: RAD_datasetFRESH_xml_SNAPP_ingroup.tar is an archive containing input xml files used for SNAPP analyses of the replicates of random allele pairings of individual SNPs within the genomically subsetted SNP dataset FRESH, retaining the ingroup only. See the ReadMe file for more information.
DOI: 10.5061/dryad.16mg6/5
title: RAD_datasetFRESH_nex_subsets_ingroup

description: RAD_datasetFRESH_nex_subsets_ingroup.tar is an archive containing the replicates of random allele pairings of individual SNPs within the genomically subsetted SNP dataset FRESH, retaining the ingroup only, in nexus format. See the ReadMe file for more information.
DOI: 10.5061/dryad.16mg6/6
title: RAD_datasetFRESH_nex_subsets

description: RAD_datasetFRESH_nex_subsets.tar is an archive containing the replicates of random allele pairings of individual SNPs within the genomically subsetted SNP dataset FRESH, including the outgroup, in nexus format. See the ReadMe file for more information.
DOI: 10.5061/dryad.16mg6/7
title: RAD_datasetDAAROODENSIS_nex_subsets

description: RAD_datasetDAAROODENSIS_nex_subsets.tar is an archive containing the replicates of random allele pairings of individual SNPs within the genomically subsetted SNP dataset DAAROODENSIS, in nexus format. See the ReadMe file for more information.
DOI: 10.5061/dryad.16mg6/8
title: RAD_datasetMUSEUM_nex_subsets

description: RAD_datasetMUSEUM_nex_subsets.tar is an archive containing the replicates of random allele pairings of individual SNPs within the genomically subsetted SNP dataset MUSEUM, in nexus format. See the ReadMe file for more information.
DOI: 10.5061/dryad.251h1/1
title: auditory_fmri_dog.zip.001

description: This is the first part of the zip file containing all data necessary for the functional analysis as presented in the manuscript. For further information see the attached ReadMe file.
DOI: 10.5061/dryad.251h1/3
title: auditory_fmri_dog.zip.003

description: This is the third part of the zip file containing all data necessary for the functional analysis as presented in the manuscript.
DOI: 10.5061/dryad.3pb86/11
title: streaked_shearwater_no14

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/12
title: streaked_shearwater_no15

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/13
title: streaked_shearwater_no16

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/15
title: Laysan_albatross_no2

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/16
title: wandering_albatross_no1

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/17
title: wandering_albatross_no2

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/18
title: wandering_albatross_no3

description: time series of latitude and longitude
DOI: 10.5061/dryad.3pb86/19
title: wandering_albatross_no4

description: time series of latitude and longitude
DOI: 10.5061/dryad.509k2/1
title: README

description: This file explains all of the variables in each of the datasets that accompany: Rosengrave P, Montgomerie R  2015ms. Cryptic female choice enhances fertilization success and embryo survival in chinook salmon
DOI: 10.5061/dryad.509k2/2
title: Trials

description: Dataset for experimental competitive and non-competitive fertilization trials