cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28557826
title: Additional file 6 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 6. Differentially expressed genes (DEGs) identified from comparison between diploid and tetraploid in peels, juice sacs, and segment membranes, respectively
DOI: 10.6084/m9.figshare.28557826.v1
title: Additional file 6 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 6. Differentially expressed genes (DEGs) identified from comparison between diploid and tetraploid in peels, juice sacs, and segment membranes, respectively
DOI: 10.6084/m9.figshare.28557835
title: Additional file 9 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 9. DEGs specifically up-regulated in tetraploid juice sacs, segment membranes, and peels in K-means analysis
DOI: 10.6084/m9.figshare.28557835.v1
title: Additional file 9 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 9. DEGs specifically up-regulated in tetraploid juice sacs, segment membranes, and peels in K-means analysis
DOI: 10.6084/m9.figshare.28557838
title: Additional file 10 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 10. KEGG enrichment analysis of DEGs involved in subclass 7 in peels.
DOI: 10.6084/m9.figshare.28557838.v1
title: Additional file 10 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 10. KEGG enrichment analysis of DEGs involved in subclass 7 in peels.
DOI: 10.6084/m9.figshare.28557844.v1
title: Additional file 11 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 11. KEGG enrichment analysis of DEGs involved in subclass 2 in juice sacs
DOI: 10.6084/m9.figshare.28557844
title: Additional file 11 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 11. KEGG enrichment analysis of DEGs involved in subclass 2 in juice sacs
DOI: 10.6084/m9.figshare.28557850
title: Additional file 13 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 13. KEGG enrichment analysis of DEGs involved in subclass 6 in segment membranes
DOI: 10.6084/m9.figshare.28557850.v1
title: Additional file 13 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 13. KEGG enrichment analysis of DEGs involved in subclass 6 in segment membranes
DOI: 10.6084/m9.figshare.28557853.v1
title: Additional file 14 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 14. Correlation analysis of top5 up-DAMs and up-DEGs in tetraploid peels
DOI: 10.6084/m9.figshare.28557856.v1
title: Additional file 15 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 15. Correlation analysis of up-DAMs and DEGs in tetraploid juice sacs
DOI: 10.6084/m9.figshare.28557853
title: Additional file 14 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 14. Correlation analysis of top5 up-DAMs and up-DEGs in tetraploid peels
DOI: 10.6084/m9.figshare.28557856
title: Additional file 15 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 15. Correlation analysis of up-DAMs and DEGs in tetraploid juice sacs
DOI: 10.6084/m9.figshare.28557859
title: Additional file 16 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 16. Correlation analysis of up-DAMs and DEGs in tetraploid segment membranes
DOI: 10.6084/m9.figshare.28557859.v1
title: Additional file 16 of Morphological and metabolic changes in Changshan Huyou (Citrus changshan-huyou) following natural tetraploidization

description: Additional file 16. Correlation analysis of up-DAMs and DEGs in tetraploid segment membranes
DOI: 10.6084/m9.figshare.28557865
title: Additional file 1 of High throughput morphological screening identifies chemically defined media for mesenchymal stromal cells that enhances proliferation and supports maintenance of immunomodulatory function

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28557865.v1
title: Additional file 1 of High throughput morphological screening identifies chemically defined media for mesenchymal stromal cells that enhances proliferation and supports maintenance of immunomodulatory function

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28557868
title: Additional file 2 of High throughput morphological screening identifies chemically defined media for mesenchymal stromal cells that enhances proliferation and supports maintenance of immunomodulatory function

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28557868.v1
title: Additional file 2 of High throughput morphological screening identifies chemically defined media for mesenchymal stromal cells that enhances proliferation and supports maintenance of immunomodulatory function

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28557904
title: Additional file 3 of UTAP2: an enhanced user-friendly transcriptome and epigenome analysis pipeline

description: Additional file 3.
DOI: 10.6084/m9.figshare.28557904.v1
title: Additional file 3 of UTAP2: an enhanced user-friendly transcriptome and epigenome analysis pipeline

description: Additional file 3.
DOI: 10.6084/m9.figshare.28433445
title: Additional file 2 of A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28433445.v1
title: Additional file 2 of A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28557926
title: Additional file 1 of Diagnostic dilemma: application of real-time PCR assays for the detection of Dientamoeba fragilis in medical and veterinary specimens

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.28557926.v1
title: Additional file 1 of Diagnostic dilemma: application of real-time PCR assays for the detection of Dientamoeba fragilis in medical and veterinary specimens

description: Supplementary material 1.
DOI: 10.6084/m9.figshare.28557938
title: Additional file 3 of Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway

description: Supplementary material 3.
DOI: 10.6084/m9.figshare.28557938.v1
title: Additional file 3 of Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway

description: Supplementary material 3.
DOI: 10.6084/m9.figshare.28557941.v1
title: Additional file 4 of Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway

description: Supplementary material 4.
DOI: 10.6084/m9.figshare.28557941
title: Additional file 4 of Gram-positive probiotics improves acetaminophen-induced hepatotoxicity by inhibiting leucine and Hippo-YAP pathway

description: Supplementary material 4.
DOI: 10.6084/m9.figshare.28557989
title: Additional file 2 of Low-coverage whole genome sequencing of cell-free DNA to predict and track immunotherapy response in advanced non-small cell lung cancer

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28557989.v1
title: Additional file 2 of Low-coverage whole genome sequencing of cell-free DNA to predict and track immunotherapy response in advanced non-small cell lung cancer

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28557995
title: Additional file 1 of Unveiling the benefits of Vitamin D3 with SGLT-2 inhibitors for hypertensive obese obstructive sleep apnea patients

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28557995.v1
title: Additional file 1 of Unveiling the benefits of Vitamin D3 with SGLT-2 inhibitors for hypertensive obese obstructive sleep apnea patients

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28557985
title: Additional file 7 of Economic impact of chicken diseases and other causes of morbidity or mortality in backyard farms in low-income and middle-income countries: a systematic review and meta-analysis

description: Additional file 7. Dataset used for the analyses.
DOI: 10.6084/m9.figshare.28557985.v1
title: Additional file 7 of Economic impact of chicken diseases and other causes of morbidity or mortality in backyard farms in low-income and middle-income countries: a systematic review and meta-analysis

description: Additional file 7. Dataset used for the analyses.
DOI: 10.15468/dl.78r8g6
title: Occurrence Download

description: A dataset containing 82159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hesperis matronalis L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 82159 records from 713 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008458-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28558003
title: Additional file 1 of Benefiting from the past: establishing in vitro culture of European beech (Fagus sylvatica L.) from provenance trial trees and seedlings

description: Additional file 1. Provenances of the beech genotypes used for in vitro culture establishment (Experiment I) and their climatic conditions. The average annual temperature and annual precipitation are based on climate data from Worldclim 2 for the period of 1970–2000. Provenances are numbered according to Table 2. Country abbreviations according to ISO 3166 1 alpha2. NP – National park.
DOI: 10.6084/m9.figshare.28558003.v1
title: Additional file 1 of Benefiting from the past: establishing in vitro culture of European beech (Fagus sylvatica L.) from provenance trial trees and seedlings

description: Additional file 1. Provenances of the beech genotypes used for in vitro culture establishment (Experiment I) and their climatic conditions. The average annual temperature and annual precipitation are based on climate data from Worldclim 2 for the period of 1970–2000. Provenances are numbered according to Table 2. Country abbreviations according to ISO 3166 1 alpha2. NP – National park.
DOI: 10.6084/m9.figshare.28558009
title: Additional file 3 of Benefiting from the past: establishing in vitro culture of European beech (Fagus sylvatica L.) from provenance trial trees and seedlings

description: Additional file 3. Evaluation of beech seedlings 12 weeks after in vitro culture establishment. Five different media (M0, M2, M2.1, M2.2, M3) were tested using whole shoots (WS) or shoot tips (ST) of seedlings. The WS and ST or media were either separately evaluated or combined (pooled). The percentages of explants exhibiting shoot formation, bacterial or fungal contamination, resting bud formation, and chlorosis are given. The median was calculated for shoot length and the number of shoots derived from one explant. Values labelled with different letters indicate significant differences between media/explant types according to pairwise Dunn’s test for the number of shoots or shoot length and Pearson’s chi‒squared test for bacterial contamination, fungal contamination, resting bud formation, and chlorosis with p ≤ 0.05. IQR – interquartile range.
DOI: 10.6084/m9.figshare.28558009.v1
title: Additional file 3 of Benefiting from the past: establishing in vitro culture of European beech (Fagus sylvatica L.) from provenance trial trees and seedlings

description: Additional file 3. Evaluation of beech seedlings 12 weeks after in vitro culture establishment. Five different media (M0, M2, M2.1, M2.2, M3) were tested using whole shoots (WS) or shoot tips (ST) of seedlings. The WS and ST or media were either separately evaluated or combined (pooled). The percentages of explants exhibiting shoot formation, bacterial or fungal contamination, resting bud formation, and chlorosis are given. The median was calculated for shoot length and the number of shoots derived from one explant. Values labelled with different letters indicate significant differences between media/explant types according to pairwise Dunn’s test for the number of shoots or shoot length and Pearson’s chi‒squared test for bacterial contamination, fungal contamination, resting bud formation, and chlorosis with p ≤ 0.05. IQR – interquartile range.
DOI: 10.6084/m9.figshare.28558030
title: Additional file 2 of The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective

description: Additional file 2: Table S4. Detailed characteristics of the constructed MAGs
DOI: 10.6084/m9.figshare.28558030.v1
title: Additional file 2 of The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective

description: Additional file 2: Table S4. Detailed characteristics of the constructed MAGs
DOI: 10.6084/m9.figshare.28558033
title: Additional file 3 of The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective

description: Additional file 3: Table S5. Detailed sequence and annotation information used in the phylogenetic tree
DOI: 10.6084/m9.figshare.28558033.v1
title: Additional file 3 of The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective

description: Additional file 3: Table S5. Detailed sequence and annotation information used in the phylogenetic tree
DOI: 10.6084/m9.figshare.28558036
title: Additional file 4 of The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective

description: Additional file 4: Table S6. Abundance of each APAP degradation enzyme in 117 WWTP samples from diverse geographical locations
DOI: 10.6084/m9.figshare.28558036.v1
title: Additional file 4 of The universal accumulation of p-aminophenol during the microbial degradation of analgesic and antipyretic acetaminophen in WWTPs: a novel metagenomic perspective

description: Additional file 4: Table S6. Abundance of each APAP degradation enzyme in 117 WWTP samples from diverse geographical locations
DOI: 10.6084/m9.figshare.28558054
title: Additional file 2 of Cyanobacterial circadian regulation enhances bioproduction under subjective nighttime through rewiring of carbon partitioning dynamics, redox balance orchestration, and cell cycle modulation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28558054.v1
title: Additional file 2 of Cyanobacterial circadian regulation enhances bioproduction under subjective nighttime through rewiring of carbon partitioning dynamics, redox balance orchestration, and cell cycle modulation

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28558052
title: Additional file 3 of Modeling the temporal prevalence peak drift of chronic diseases

description: Additional file 3: How to run the R-code.
DOI: 10.6084/m9.figshare.28558052.v1
title: Additional file 3 of Modeling the temporal prevalence peak drift of chronic diseases

description: Additional file 3: How to run the R-code.
DOI: 10.6084/m9.figshare.28558058
title: Additional file 5 of Modeling the temporal prevalence peak drift of chronic diseases

description: Additional file 5: Dataset for the analysis.
DOI: 10.6084/m9.figshare.28558058.v1
title: Additional file 5 of Modeling the temporal prevalence peak drift of chronic diseases

description: Additional file 5: Dataset for the analysis.
DOI: 10.15468/dl.aag98v
title: Occurrence Download

description: A dataset containing 1571107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconia ciconia (Linnaeus, 1758)"
 ]
}

 The dataset includes 1571107 records from 1864 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008457-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive188.20250331.9.3
title: Bowdeniella nasicola (Hall et al. 2003) Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive188.20251217.10
title: Bowdeniella nasicola (Hall et al. 2003) Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0068528.10fu
title: SH0068528.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive189.20250331.9.3
title: Actinomyces dentalis Hall et al. 2005 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive189.20251217.10
title: Actinomyces dentalis Hall et al. 2005 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0068529.10fu
title: SH0068529.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive190.20250331.9.3
title: Actinomyces johnsonii Henssge et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0068530.10fu
title: SH0068530.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive190.20251217.10
title: Actinomyces johnsonii Henssge et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive191.20250331.9.3
title: Actinomyces oris Henssge et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0068531.10fu
title: SH0068531.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive191.20251217.10
title: Actinomyces oris Henssge et al. 2009

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.