cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12459056
title: agnostosDB_dbf02445-20200519

description: The agnostosDB (dbf02445-20200519) is a comprehensive dataset of microbial gene clusters (GCs) from genomes and metagenomes. It contains 5,287,759 GCs and more than 280M genes coming from the bacterial and archaeal Genome Taxonomy Database (GTDB) genomes, and from five large-scale metagenomic projects: 583 marine metagenomes from Tara Oceans expedition (TARA), Malaspina expedition, Ocean Sampling Day (OSD), Global Ocean Sampling Expedition (GOS), complemented with 1,246 metagenomes from the Human Microbiome Project (HMP) phase I and II. The dataset is described in Vanni et al. 2020.<br>Additional and more detailed information about the dataset creation and some of its applications, can be found at https://dark.metagenomics.eu/.Related to the agnostosDB is the agnostos-wf, a snakemake workflow stored in the GitHub repository https://github.com/functional-dark-side/agnostos-wf. The agnostos-wf allows to search the agnostosDB gene cluster HMM profiles and/or to integrate new sequence data (genes/contigs) in it.
DOI: 10.6084/m9.figshare.12459056.v23
title: agnostosDB_dbf02445-20200519

description: The agnostosDB (dbf02445-20200519) is a comprehensive dataset of microbial gene clusters (GCs) from genomes and metagenomes. It contains 5,287,759 GCs and more than 280M genes coming from the bacterial and archaeal Genome Taxonomy Database (GTDB) genomes, and from five large-scale metagenomic projects: 583 marine metagenomes from Tara Oceans expedition (TARA), Malaspina expedition, Ocean Sampling Day (OSD), Global Ocean Sampling Expedition (GOS), complemented with 1,246 metagenomes from the Human Microbiome Project (HMP) phase I and II. The dataset is described in Vanni et al. 2020.<br>Additional and more detailed information about the dataset creation and some of its applications, can be found at https://dark.metagenomics.eu/.Related to the agnostosDB is the agnostos-wf, a snakemake workflow stored in the GitHub repository https://github.com/functional-dark-side/agnostos-wf. The agnostos-wf allows to search the agnostosDB gene cluster HMM profiles and/or to integrate new sequence data (genes/contigs) in it.
DOI: 10.5258/soton/d2203
title: Dataset for PhD Thesis "Data Technologies for Lower Limb Orthosis Design and Assessment"

description: This dataset supports the Thesis: by Kelly, E.S. TITLE- Data Technologies for Lower Limb Orthosis Design and Assessment The thesis featured participant testing (Chapter 3) and secondary analysis of MR and clinical data (Chapters 4-6). Due to participant confidentiality constraints of the original study ethics, the imaging data are not enclosed in this raw data file. This dataset contains: A simple Excel spreadsheet containing the raw data behind the tables and figures in the linked thesis.
DOI: 10.6084/m9.figshare.19689256
title: Distinct Mechanisms of Innate and Adaptive Immune Regulation Underlie Poor Oncologic Outcomes Associated with KRAS-TP53 Co-Alteration in Pancreatic Cancer

description: Supplementary Tables S1-5 (in Excel format) and Materials (including Methods, Supplementary Figures, References, and additional Supplementary Tables S6 and S7)
DOI: 10.6084/m9.figshare.19689256.v1
title: Distinct Mechanisms of Innate and Adaptive Immune Regulation Underlie Poor Oncologic Outcomes Associated with KRAS-TP53 Co-Alteration in Pancreatic Cancer

description: Supplementary Tables S1-5 (in Excel format) and Materials (including Methods, Supplementary Figures, References, and additional Supplementary Tables S6 and S7)
DOI: 10.5281/zenodo.5607772
title: Figure 5M

description: PAI of the murine bladder
DOI: 10.5281/zenodo.5607771
title: Figure 5M

description: PAI of the murine bladder
DOI: 10.5258/soton/d2242
title: Dataset to support the article: "A SARS-Cov-2 Sensor Based on Upconversion Nanoparticles and Graphene Oxide"

description: This file contains the raw data for the article "A SARS-Cov-2 Sensor Based on Upconversion Nanoparticles and Graphene Oxide " in RSC Advances
DOI: 10.6084/m9.figshare.20071733
title: Problems with the IELTS academic writing test

description: The data are the transcript of interviews with the participants of a study.
DOI: 10.6084/m9.figshare.20071733.v1
title: Problems with the IELTS academic writing test

description: The data are the transcript of interviews with the participants of a study.
DOI: 10.6084/m9.figshare.17125037
title: SI - PhD Karel Vlaeminck, Chapter 3 - Raw data 1

description: Raw data on life table experiments (survival, reproduction, and growth) for Daphnia magna, exposed for 21-days to pyrene, dicofol, endosulfan, and alfa-hexachlorocylcohexane.
DOI: 10.6084/m9.figshare.17125058
title: SI - PhD Karel Vlaeminck, Chapter 3 - Raw data 2

description: Raw data on the population experiment with Daphnia magna exposed to dynamic mixtures of pyrene, dicofol, a-HCH, and endosulfan.
DOI: 10.6084/m9.figshare.17125058.v1
title: SI - PhD Karel Vlaeminck, Chapter 3 - Raw data 2

description: Raw data on the population experiment with Daphnia magna exposed to dynamic mixtures of pyrene, dicofol, a-HCH, and endosulfan.
DOI: 10.6084/m9.figshare.20071751
title: The CCD and LTO emissions of each route and airline for the six pollutions from 2014 to 2019 of China-Foreign routes

description: The CCD and LTO emissions of each route and airline for the six pollutions from 2014 to 2019 are shown in Supplementary Tables S1-S6
DOI: 10.6084/m9.figshare.20071751.v1
title: The CCD and LTO emissions of each route and airline for the six pollutions from 2014 to 2019 of China-Foreign routes

description: The CCD and LTO emissions of each route and airline for the six pollutions from 2014 to 2019 are shown in Supplementary Tables S1-S6
DOI: 10.6084/m9.figshare.20070371
title: NAS-bench-Graph

description: refer to https://github.com/THUMNLab/NAS-Bench-Graph
DOI: 10.6084/m9.figshare.20071766.v1
title: Figure2_data

description: cesm-dart outputs
DOI: 10.6084/m9.figshare.20071757
title: Figure1_data

description: cesm dart outputs temperature rmse
DOI: 10.6084/m9.figshare.20071757.v1
title: Figure1_data

description: cesm dart outputs temperature rmse
DOI: 10.6084/m9.figshare.20071769.v1
title: Figure3_data

description: cesm-dart outputs
DOI: 10.6084/m9.figshare.20071775.v1
title: Figure4_data

description: cesm-dart outputs
DOI: 10.6084/m9.figshare.20071778.v1
title: Figure5_data

description: cesm-dart outputs
DOI: 10.6084/m9.figshare.20071781.v1
title: Figure6_data

description: cesm-dart outputs
DOI: 10.6084/m9.figshare.20071784.v1
title: Figure7_data

description: cesm-dart ouputs
DOI: 10.5281/zenodo.6644560
title: Results and interpretation of spectral-window selection by ModeNet

description: This data set includes the results and interpretation of spectral-window selection by ModeNet shown in the article "ModeNet: A machine learning-based neural network for selecting normal-mode spectral windows".
DOI: 10.5281/zenodo.6644559
title: Results and interpretation of spectral-window selection by ModeNet

description: This data set includes the results and interpretation of spectral-window selection by ModeNet shown in the article "ModeNet: A machine learning-based neural network for selecting normal-mode spectral windows".
DOI: 10.6084/m9.figshare.20071787.v1
title: Figure8_data

description: cesm-dart ouputs
DOI: 10.6084/m9.figshare.20071790.v1
title: FIgure9_data

description: cesm-dart ouputs
DOI: 10.6084/m9.figshare.20071793.v1
title: Figure10_data

description: cesm-dart ouputs
DOI: 10.6084/m9.figshare.20071796.v1
title: Figure11_data

description: cesm-dart ouputs
DOI: 10.6084/m9.figshare.13360073
title: R code and data for the publication "Predators minimize energy costs, rather than maximize energy gains under warming: Evidence from a microcosm feeding experiment"

description: Abstract: <strong>1.</strong> Climate warming may alter predator-prey interactions and predator feeding behaviour due to increased metabolic demands. How predators meet these increased demands may depend on trade-offs in prey energy content and body size, handling time, and other functional constraints. <strong>2.</strong> We tested hypotheses associated with these trade-offs with the predatory mite <em>Stratiolaelaps scimitus</em>, and three prey that differed in body size, energy content, and defenses (<em>Folsomia candida</em>, <em>Oppia nitens</em>, and <em>Carpoglyphus lactis</em>). We estimated metabolic rate, predation in choice and no choice feeding trials, movement rate, and lipid and protein content for all four species at 16 °C and 24 °C. We used these data to estimate the predator’s energy demands and compared these to estimated energy intake in the choice feeding trials. <strong>3.</strong> Predators had greater metabolic demands at 24 °C than at 16 °C, but temperature did not affect predator or prey movement rates. Warming decreased lipid content, but not protein content, of all three prey species, leading to lower energy content for <em>C</em>. <em>lactis</em> and <em>O. nitens</em>, but not <em>F</em>. <em>candida</em>. In both feeding trials at 24 °C, predators increased their feeding on the smaller, energy-poor <em>C</em>. <em>lactis</em>, but not the larger, energy-rich <em>F</em>. <em>candida</em>, resulting in lower estimated energy intake. <em>S</em>. <em>scimitus</em> did not feed on <em>O. nitens</em> at either temperature. <strong>4.</strong> Predators increasingly fed on small-bodied prey under warming, and not the large-bodied prey despite the potential for greater energetic gains from larger prey. We posit that predators minimized energy lost during feeding through lower handling costs associated with <em>C. lactis</em>, rather than maximize energy gain. We conclude that selection of prey based on body size changes with temperature as a trade-off for predators to balance increased metabolic demands. As predators provide top-down control and regulate energy flow through the consumption of their prey, changes to predator feeding behaviour with climate warming may affect food web dynamics and ecosystem-level processes.
DOI: 10.6084/m9.figshare.13360073.v1
title: R code and data for the publication "Predators minimize energy costs, rather than maximize energy gains under warming: Evidence from a microcosm feeding experiment"

description: Abstract: <strong>1.</strong> Climate warming may alter predator-prey interactions and predator feeding behaviour due to increased metabolic demands. How predators meet these increased demands may depend on trade-offs in prey energy content and body size, handling time, and other functional constraints. <strong>2.</strong> We tested hypotheses associated with these trade-offs with the predatory mite <em>Stratiolaelaps scimitus</em>, and three prey that differed in body size, energy content, and defenses (<em>Folsomia candida</em>, <em>Oppia nitens</em>, and <em>Carpoglyphus lactis</em>). We estimated metabolic rate, predation in choice and no choice feeding trials, movement rate, and lipid and protein content for all four species at 16 °C and 24 °C. We used these data to estimate the predator’s energy demands and compared these to estimated energy intake in the choice feeding trials. <strong>3.</strong> Predators had greater metabolic demands at 24 °C than at 16 °C, but temperature did not affect predator or prey movement rates. Warming decreased lipid content, but not protein content, of all three prey species, leading to lower energy content for <em>C</em>. <em>lactis</em> and <em>O. nitens</em>, but not <em>F</em>. <em>candida</em>. In both feeding trials at 24 °C, predators increased their feeding on the smaller, energy-poor <em>C</em>. <em>lactis</em>, but not the larger, energy-rich <em>F</em>. <em>candida</em>, resulting in lower estimated energy intake. <em>S</em>. <em>scimitus</em> did not feed on <em>O. nitens</em> at either temperature. <strong>4.</strong> Predators increasingly fed on small-bodied prey under warming, and not the large-bodied prey despite the potential for greater energetic gains from larger prey. We posit that predators minimized energy lost during feeding through lower handling costs associated with <em>C. lactis</em>, rather than maximize energy gain. We conclude that selection of prey based on body size changes with temperature as a trade-off for predators to balance increased metabolic demands. As predators provide top-down control and regulate energy flow through the consumption of their prey, changes to predator feeding behaviour with climate warming may affect food web dynamics and ecosystem-level processes.
DOI: 10.6084/m9.figshare.20069897.v5
title: Agricultural Crop- and Animal-specific Ammonia Emission Inventory

description: All products (crop- and animal- specific NH3 emission inventories in the time span of 1961-2018) are provided in TIFF format at a spatial resolution of 0.5 degree by 0.5 degree (latitude by longitude) at figshare. The unit is kg N yr-1, stored in two folders (cropland and livestock).
DOI: 10.17045/sthlmuni.14891607
title: Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia

description: Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia <br> 1. Title of Dataset: Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia <br> 2. Author Information Principal Investigator Contact Information Name: Stefan Wiens Institution: Department of Psychology, Stockholm University, Sweden Internet: https://www.su.se/profiles/swiens-1.184142 Email: sws@psychology.su.se <br> 3. Date of data collection: Subjects (N = 70 patients and N = 53 controls) were tested between 2015-sep-30 and 2016-jan-15. <br> 4. Geographic location of data collection: Department of Psychology, Stockholm, Sweden <br> 5. Information about funding sources that supported the collection of the data: Marcus och Amalia Wallenbergs minnesfond (2019-0102) <br> SHARING/ACCESS INFORMATION 1. Licenses/restrictions placed on the data: CC BY 4.0 2. Links to publications that cite or use the data: Wiens, S., Eklund, R., Szychowska, M., Miloff, A., Cosme, D., Pierzchajlo, S., & Carlbring, P. (2022). Electrophysiological correlates of in vivo and virtual reality exposure therapy in spider phobia. <em>Psychophysiology</em>.<sub> https://doi.org/10.1111/psyp.14117</sub> 3. Links to other publicly accessible locations of the data: N/A 4. Links/relationships to ancillary data sets: N/A 5. Was data derived from another source? No 6. Recommended citation for this dataset: Eklund R., & Wiens S. (2022). Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia. Stockholm: Stockholm University. <sub>https://doi.org/10.17045/sthlmuni.14891607</sub> <br> DATA & FILE OVERVIEW The files contain the raw data, scripts, and results of main and supplementary analyses of the electroencephalography (EEG) study reported in the main publication. VR_spider_LMM.html, VR_spider_LMM_exclude_target_trials.html, VR_spider_analyze_clinical_data: Main results files (also included in R_scripts.zip) supplement_CritiqueOfLeutgebStudies.pdf: Critique of previous studies supplement_PilotStudy.pdf: Description of pilot study data_bids.zip: EEG data in bids format MNE-python.zip: MNE-python scripts to preprocess EEG data together with preprocessed data R_scripts.zip: R scripts to analyze the EEG mean amplitudes and behavioral data
DOI: 10.17045/sthlmuni.14891607.v1
title: Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia

description: Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia <br> 1. Title of Dataset: Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia <br> 2. Author Information Principal Investigator Contact Information Name: Stefan Wiens Institution: Department of Psychology, Stockholm University, Sweden Internet: https://www.su.se/profiles/swiens-1.184142 Email: sws@psychology.su.se <br> 3. Date of data collection: Subjects (N = 70 patients and N = 53 controls) were tested between 2015-sep-30 and 2016-jan-15. <br> 4. Geographic location of data collection: Department of Psychology, Stockholm, Sweden <br> 5. Information about funding sources that supported the collection of the data: Marcus och Amalia Wallenbergs minnesfond (2019-0102) <br> SHARING/ACCESS INFORMATION 1. Licenses/restrictions placed on the data: CC BY 4.0 2. Links to publications that cite or use the data: Wiens, S., Eklund, R., Szychowska, M., Miloff, A., Cosme, D., Pierzchajlo, S., & Carlbring, P. (2022). Electrophysiological correlates of in vivo and virtual reality exposure therapy in spider phobia. <em>Psychophysiology</em>.<sub> https://doi.org/10.1111/psyp.14117</sub> 3. Links to other publicly accessible locations of the data: N/A 4. Links/relationships to ancillary data sets: N/A 5. Was data derived from another source? No 6. Recommended citation for this dataset: Eklund R., & Wiens S. (2022). Open data: Electrophysiological correlates of in-vivo and virtual reality therapy in spider phobia. Stockholm: Stockholm University. <sub>https://doi.org/10.17045/sthlmuni.14891607</sub> <br> DATA & FILE OVERVIEW The files contain the raw data, scripts, and results of main and supplementary analyses of the electroencephalography (EEG) study reported in the main publication. VR_spider_LMM.html, VR_spider_LMM_exclude_target_trials.html, VR_spider_analyze_clinical_data: Main results files (also included in R_scripts.zip) supplement_CritiqueOfLeutgebStudies.pdf: Critique of previous studies supplement_PilotStudy.pdf: Description of pilot study data_bids.zip: EEG data in bids format MNE-python.zip: MNE-python scripts to preprocess EEG data together with preprocessed data R_scripts.zip: R scripts to analyze the EEG mean amplitudes and behavioral data
DOI: 10.6084/m9.figshare.20024555.v2
title: dataset of the Tibetan Plateau

description: <em>The TP Sub-regional Dynamical Downscaling dataset (TPSDD) is the first high-spatial-temporal resolution grid dataset for land-air exchange processes and lower atmospheric structures studies over the whole TP, taking the climate characteristics of each TP sub-region into consideration. The dataset spans from 1981 to 2020, covering the TP with a temporal resolution of 2 hours and spatial resolution of 10 km. Meteorological elements of the TPSDD include the near-surface land-air exchange parameters, such as downwards/upwards long-wave/short-wave radiation fluxes, momentum flux, sensible heat flux, latent heat flux, and so on. In addition, the vertical distributions of 3-dimensional wind, temperature, humidity, and pressure from the surface to tropopause are also included. Independent evaluations were conducted for the TPSDD using the observational data, compared with the most recent ERA5 reanalysis data. The results demonstrate the accuracy and superiority of this dataset against reanalysis data, which provides great potential for future climate change research.</em>
DOI: 10.6084/m9.figshare.20071822
title: Algal_count from Change in prey genotype frequency rescues predator from extinction

description: Raw data algal counts
DOI: 10.6084/m9.figshare.20071825
title: MetaXpress Custom module for Algalcounts from Change in prey genotype frequency rescues predator from extinction

description: Analyses file for algal counts
DOI: 10.6084/m9.figshare.20071825.v1
title: MetaXpress Custom module for Algalcounts from Change in prey genotype frequency rescues predator from extinction

description: Analyses file for algal counts
DOI: 10.6084/m9.figshare.20071822.v1
title: Algal_count from Change in prey genotype frequency rescues predator from extinction

description: Raw data algal counts
DOI: 10.6084/m9.figshare.20071828
title: Rotifer count from Change in prey genotype frequency rescues predator from extinction

description: Raw data rotifer counts
DOI: 10.6084/m9.figshare.20071828.v1
title: Rotifer count from Change in prey genotype frequency rescues predator from extinction

description: Raw data rotifer counts
DOI: 10.6084/m9.figshare.20071834.v1
title: Algal_phenotype from Change in prey genotype frequency rescues predator from extinction

description: Raw data algal phenotypes
DOI: 10.6084/m9.figshare.20071834
title: Algal_phenotype from Change in prey genotype frequency rescues predator from extinction

description: Raw data algal phenotypes
DOI: 10.6084/m9.figshare.20071837
title: Treatment description from Change in prey genotype frequency rescues predator from extinction

description: Indirect evolutionary rescue (IER) is a mechanism where a non-evolving species is saved from extinction in an otherwise lethal environment by evolution in an interacting species. This process has been described in a predator–prey model, where extinction of the predator is prevented by a shift in the frequency of defended towards undefended prey when reduced predator densities lower selection for defended prey. We test here how increased mortality and the initial frequencies of the prey types affect IER. Combining the analysis of model simulations and experiments with rotifers feeding on algae we show IER in the presence of increased predator mortality. We found that IER was dependent on the ability of the prey to evolve as well as on the frequency of the defended prey. High initial frequencies of defended prey resulted in predator extinction despite the possibility for prey evolution, as the increase in undefended prey was delayed too much to allow predator rescue. This frequency dependency for IER was more pronounced for higher predator mortalities. Our findings can help informing the development of conservation and management strategies that consider evolutionary responses in communities to environmental changes.
DOI: 10.6084/m9.figshare.20071837.v1
title: Treatment description from Change in prey genotype frequency rescues predator from extinction

description: Indirect evolutionary rescue (IER) is a mechanism where a non-evolving species is saved from extinction in an otherwise lethal environment by evolution in an interacting species. This process has been described in a predator–prey model, where extinction of the predator is prevented by a shift in the frequency of defended towards undefended prey when reduced predator densities lower selection for defended prey. We test here how increased mortality and the initial frequencies of the prey types affect IER. Combining the analysis of model simulations and experiments with rotifers feeding on algae we show IER in the presence of increased predator mortality. We found that IER was dependent on the ability of the prey to evolve as well as on the frequency of the defended prey. High initial frequencies of defended prey resulted in predator extinction despite the possibility for prey evolution, as the increase in undefended prey was delayed too much to allow predator rescue. This frequency dependency for IER was more pronounced for higher predator mortalities. Our findings can help informing the development of conservation and management strategies that consider evolutionary responses in communities to environmental changes.
DOI: 10.15468/dl.j5pgc7
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-4.25124 57.55567,-4.55521 57.1939,-4.66812 56.83836,-4.57851 56.70771,-4.34217 56.52998,-3.86247 56.51682,-3.55283 56.47406,-2.95511 56.57017,-2.85537 56.72123,-2.68217 56.94802,-2.43188 57.33977,-2.87456 57.54227,-3.27903 57.65996,-4.25124 57.55567))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Moneses uniflora (L.) A.Gray",
 "Year 1970-2021"
 ]
}

 The dataset includes 140 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0310035-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.