cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.v4bf803/1
title: data_Adamkova_et_al

description: In birds, concentrations of testosterone (T) and corticosterone (Cort) are closely connected with many morphological, behavioural and other physiological traits, including reproduction, metabolism, immunity, and fitness. The direction of the effect of these hormones on above-mentioned traits, and the potential feedback between hormones are in general unclear; in addition, knowledge on how age and sex can affect T and Cort concentrations is still inconsistent. Our study used a novel method to analyse testosterone and corticosterone in feathers (Tf, Cortf) based on the pre-column chemical derivatization of hormones before LC-MS/MS analysis. Unlike previously used methods (RIA, EIA), our analytical procedure allows simultaneous analysis of both hormones from small amounts of feathers (4-25 mg) and thus overcomes the problem of insufficient detection limits. We applied this method to reveal associations between Tf and Cortf hormone concentrations and feather growth, age, and sex in feathers grown during the post-breeding (flanks) and pre-breeding (tails) periods in barn swallows (Hirundo rustica). There was neither a correlation between pre-breeding and post-breeding Tf, nor between pre-breeding and post-breeding Cortf. Tail Cortf concentrations were negatively associated with tail feather growth rates. Feather hormone concentrations were correlated in the pre-breeding period, negatively in males but positively in females. Both Cortf and Tf were higher in young birds compared to older ones, indicating either an age-related decrease in hormone concentrations within individuals, or the selective disappearance of individuals with high steroid concentrations. Males and females did not differ in Cortf, but Tf concentrations were higher in males than females, particularly during the pre-breeding period. In this study, we provide an effective method for analysing hormones in feathers in an ecological context, especially in situations when the total amount of feathers available for the analysis is limited.
DOI: 10.17632/wmfstt5f36.1
title: Data for: Upscaling of polymer adsorption

description: Eclipse data files for layered model used in article.
DOI: 10.17632/zp5ppbdbs5.1
title: Data for: L-PBF Process Parameters on Interior Channel Surface Roughness of As-Fabricated and Electropolished NiTi

description: Roughness data from L-PBF fabricated NiTi
DOI: 10.5061/dryad.2r23j1q/1
title: Heliconiine and Passiflora data

description: LC-MS/MS data from different species of heliconiine butterflies and Passiflora plants
DOI: 10.5061/dryad.33874bj/3
title: Codd et al_gator EMG analysis

description: raw and processed EMG data files
DOI: 10.5061/dryad.33874bj/4
title: Codd et al_suppl. data

description: raw and processed EMG data files
DOI: 10.5061/dryad.44vr58d/1
title: SimulationLevel

description: The data are a summary of all SNP for each simulation (all treatments and generations). It contains the number of migration rate, population size, presence/absence of selection, SNPs, JostD, Fst, Fst_averageOfRatios (meaning explained in the paper), Tajima's D, Dxy (Dxy average over all sites), Dxy_SNP (Dxy averaged over all plymorphic sites), Hs (within population genetic diversity) and Ht (total genetic diversity) both averaged over all sites, not only the polymorphic ones (as made clear from the long column name; to obtain the average of all SNP just multiply the the number of SNPs and divide by the number of sites in the focal region), and Hudson and Kaplan (1998) B statistic.
DOI: 10.5061/dryad.44vr58d/2
title: SimulationLevelAfterFilteringOutMAF

description: It is the exact same file as SimulationLevel.txt but with the data computed only on the SNPs whose Minor Allele Frequency (MAF) is greater than 0.05.
DOI: 10.5061/dryad.44vr58d/3
title: SNPLevel.txt

description: The file contains the details for all SNPs (one SNP per line) for all generations of the default treatment. The columns are PatchSize (number of individuals per patch), migrationRate (explicit), isThereSelection (presence / absence of BGS), patch0AlleleFrequency (allele frequency in patch 0), patch1AlleleFrequency (allele frequency in patch 1), SimulationID (identifier for the simulation), JostD (explicit), Fst (Weir and Cockerham estimator of Fst), Gst (Nei's estimator of Fst), nbPatches (number of patches), meanAlleleFrequency (mean allele frequency among both patches), meanAlleleFrequencyAfterFilteringOutAlleleFrequencyLowerThan5Percent (explicit), varianceInAlleleFrequencyAmongPatches (variance in allele frequency among both patches), Treatment (explicit), B_theoreticalIndexOfBGS (Index of BGS selection called B, see Hudson and Kaplan 2015), GenerationIn2Nunit (generation sampled).
DOI: 10.5061/dryad.44vr58d/4
title: Fdist2

description: Contains the False Positive Rate (FPR) for each set of Fdist2 runs for each treatment for each sampled generation.
DOI: 10.5061/dryad.44vr58d/5
title: ComparisonZC

description: This is the data used in Appendix A to compare the working of SimBit with previous work by Zeng and Corcoran (2015).
DOI: 10.5061/dryad.44vr58d/6
title: SoftwareComparisons

description: This file contains the results of simulations used in appendix A, comparing the working of the softwares SimBit, Nemo and SLiM.
DOI: 10.5061/dryad.4dn2qh9/1
title: Tree growth and d13C data at coastal Washington, USA

description: Data were collected from six coastal sites at western Washington, USA. Details of the dataset, please see methods in the published paper.
DOI: 10.5061/dryad.51m8c58/1
title: Hearing measurements of wild type and Mkp1 deficient mice
DOI: 10.5061/dryad.51m8c58/3
title: Cochlear gene expression, cell markers
DOI: 10.5061/dryad.51m8c58/4
title: Cochlear gene expression, oxidative stress markers
DOI: 10.5061/dryad.51m8c58/5
title: Cochlear gene expression, inflammation markers
DOI: 10.5061/dryad.57hr00q/1
title: diffsel_concat_experiment

description: Results of running diffsel on the concatenation experiment.
DOI: 10.5061/dryad.57hr00q/2
title: outdir_without_chains.tar

description: Output files without diffsel chains.
DOI: 10.5061/dryad.57hr00q/3
title: C4AmaranthaceaePolyroot.tar.gz

description: Results of the pipeline on the Amaranthaceae tree.
DOI: 10.5061/dryad.57hr00q/4
title: cyp_coding.Chrysithr_root.tar.gz

description: Results of the pipeline on the cyp tree.
DOI: 10.5061/dryad.57hr00q/5
title: orthomam_aridity.tar.gz

description: Results of the pipeline on the Orthomam tree annotated with convergence to aridity.
DOI: 10.5061/dryad.6v03s1s/1
title: Appendix D1

description: Collection and sequencing information for individual plants.
DOI: 10.5061/dryad.6v03s1s/2
title: Appendix D2

description: Filtered variant data.
DOI: 10.5061/dryad.6v03s1s/3
title: Appendix D3

description: Filtered variant data.
DOI: 10.5061/dryad.6v03s1s/4
title: Appendix D4

description: Filtered variant data.
DOI: 10.5061/dryad.76980vs/1
title: RTs of the described experiments (collaboration, competition, and audience). Outliers RTs are not excluded in this table
DOI: 10.5061/dryad.88dd3vk/1
title: Gasbarro_etal(2019_JMS)_Data

description: Data are animal counts and environment data collected during three remotely operated vehicle imagery surveys in Saanich Inlet, Vancouver Island, British Columbia, Canada in 2016. Each row entry equals a second of annotated ROV video with associated metadata (e.g. video file properties), water column data (e.g. depth, temperature, oxygen), or species data (presence/absence or counts). Extended details can be found with the associated README file.
DOI: 10.5061/dryad.9v60c13/1
title: SampleDescription

description: List of rice genotypes used in genetic study, genotype source, grain attributes, and presence or absence of 14-basepair deletion in Rc gene.
DOI: 10.5061/dryad.9v60c13/2
title: GeneticMarkers

description: Distribution and allele variation of 98 microsatellite markers and 1 Rc gene-specific marker among 96 weedy, cultivated and wild rices.  Microsatellite marker primer sequences are most accessible from the Gramene database
(http://archive.gramene.org/markers/microsat/) but were published in: International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793-800. The Rc marker is published in Subudhi et al. 2012: Subudhi, P.K, Parco, A., Singh, P.K., De Leon, T., Karan, R., Biradar, H., Cohn, M.A., Brar, D.S., & Sasaki, T. (2012) Genetic architecture of seed dormancy in US weedy rice in different genetic backgrounds. Crop Science 52: 2564-2575.
DOI: 10.5061/dryad.9v60c13/3
title: GeneticData

description: Genotype data from 99 genetic markers described in the file GeneticMarkers.csv for 96 rice samples described in the file SampleDescription.csv.  Data contains codominant marker data with two columns for each locus and one line per sample.  Alleles are numbered 1 through n for each marker.  Missing data is coded as 0.
DOI: 10.5061/dryad.d0bh91n/1
title: Sampling effort for field mating rates and fecundity

description: Date, location and catching effort (min) for each field visit between 2015-2017.
DOI: 10.5061/dryad.d0bh91n/2
title: Field mating rates

description: Mating activity of females of Ischnura elegans in the field. Each record consists of an individual female, belonging to one of three heritable colour morphs. Females were classified as "immature" or "mature" based on their developmental colour phase. The "Copula" column indicates whether females were mating (1) or single (0) when found.
DOI: 10.5061/dryad.d0bh91n/3
title: Field fecundity

description: Fecundity (number of eggs) of field-mated females of Ischnura elegans. Each record consists of an individual female, belonging to one of three heritable colour morphs. Females were classified as "immature" or "mature" based on their developmental colour phase. Mating females were brought to an indoor lab for oviposition.
DOI: 10.5061/dryad.d0bh91n/4
title: Effects of abdoment colour on inter-sexual interactions

description: Intersexual interactions in experimental trials where female abdomen colour was manipulated to alter their perceived developmental state. Each row represents a female in an experimental trial. There are two female-age categories and three heritable colour morphs. The "Phenotype" column indicates the abdomen colour displayed by each female. The "Treatment" column indicates whether such colour matches the actual developmental stage (control), advances the perceived developmental stage (forward) or conceals female maturity (reverse). We recorded male approaches to females, clasping attempts, tandem formation and mating activity.
DOI: 10.5061/dryad.d6n77r3/1
title: All Data Fatty Acids

description: Raw data of Neutral Lipid Fatty acid analyzes from several groups of animal taxa (minus blind).
DOI: 10.5061/dryad.k47bn07/1
title: data age mat paper JAE 2019
DOI: 10.5061/dryad.k90h35k/1
title: Biederman et al (2019) 2009 vs 2015 comparison

description: Polar lipid composition of mitochondrial membranes prepared from cardiac ventricle of Chaenocephalus aceratus and Notothenia coriiceps. Measurements were performed in animals collected in the region of the Western Antarctic Peninsula during the austral fall seasons of 2009 and 2015.
DOI: 10.5061/dryad.k90h35k/2
title: Biederman et al (2019) cardiolipin

description: Cardiolipin contents of mitochondrial membranes prepared from cardiac ventricle of Chaenocephalus aceratus, Notothenia coriiceps, and Pseudochaenichthys georgianus. Measurements were performed in animals collected in the region of the Western Antarctic Peninsula during the austral fall season of 2015.
DOI: 10.5061/dryad.k90h35k/3
title: Biederman et al (2019) lipid peroxidation

description: Lipid peroxidation of mitochondrial membranes prepared from cardiac ventricle of Chaenocephalus aceratus, Notothenia coriiceps, and Pseudochaenichthys georgianus. Measurements were performed in animals collected in the region of the Western Antarctic Peninsula during the austral fall season of 2015.
DOI: 10.5061/dryad.k90h35k/4
title: Biederman et al (2019) membrane fluidity

description: Fluidity of mitochondrial membranes prepared from cardiac ventricle of Chaenocephalus aceratus, Notothenia coriiceps, and Pseudochaenichthys georgianus. Measurements were performed in animals collected in the region of the Western Antarctic Peninsula during the austral fall season of 2015.
DOI: 10.5061/dryad.k90h35k/5
title: Biederman et al (2019) polar lipid profile

description: Polar lipid profile of mitochondrial membranes prepared from cardiac ventricle of Chaenocephalus aceratus, Notothenia coriiceps, and Pseudochaenichthys georgianus. Measurements were performed in animals collected in the region of the Western Antarctic Peninsula during the austral fall season of 2015.
DOI: 10.5061/dryad.kc835.7
title: Data from: Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity
DOI: 10.5061/dryad.m06n200/2
title: .fasta files corresponding to each orthogroup in the analysis

description: .fasta files corresponding to each orthogroup in the analysis
DOI: 10.5061/dryad.m06n200/3
title: Phylogenetic trees and alignments for orthogroups

description: Phylogenetic trees and alignments for orthogroups
DOI: 10.5061/dryad.m06n200/4
title: Assemblies, protein predictions and annotations

description: Genome assemblies, protein predictions and annotations for each of the ten Galdieria and Cyanidioschyzon strains studied
DOI: 10.5061/dryad.nj29qb8/8
title: R scripts

description: This compressed directory contains the main R scripts used for data analysis. BayesModAv.R performs the Bayesian model averaging analysis. windowMavEffComps.R examines window-based association of effect sizes among traits. ineEffectsLmer-cat.R and LineEffectsLmer.R perform the linear mixed model estimates of variance components.
DOI: 10.5061/dryad.nj29qb8/9
title: Genomic estimated breeding values

description: This compressed directory contains three text files with genomic estimated breeding values (GEBVs) for each line and trait. GEBVs for chemistry, caterpillar and plant traits are in bv_pred_ir.txt, bv_pred_cat.txt and bv_pred_plant.txt, respectively.
DOI: 10.5061/dryad.rq2dg6m/1
title: DolphinGenotypeData

description: Genotypes for 272 individual Tursiops aduncus at 4235 loci
DOI: 10.5061/dryad.rq2dg6m/2
title: SimulatedGenotypeData

description: Genotypes simulated using the program Conancestry (Wang 2011) for 100 pairs at each of 6 levels of relatedness. Allele frequencies and genotyping error are set to match those found in the real dolphin genotype data in the study.
DOI: 10.5061/dryad.rq2dg6m/3
title: social_model_variabes_dryad

description: All pairwise variables included in the social network model: the association strength (simple ratio index), the total number of sightings of both individuals, home range overlap (volume of intersection), age difference in years, and the sexes of the pair
DOI: 10.5061/dryad.s98q453/27
title: Trimmed RNAseq for Sorghum_11_reverse_paired
DOI: 10.5061/dryad.s98q453/28
title: Trimmed RNAseq for Sorghum_11_forward_paired
DOI: 10.5061/dryad.s98q453/29
title: Table_Samples_Information

description: This file contains all information regarding the RNAseq libraries/samples.
DOI: 10.5061/dryad.s98q453/30
title: Annotation_diferentially_expressed_transcripts

description: Annotated transcripts detected as deferentially expressed in S. hermonthica growing in Sorghum vs Maize. The table also contains the values for the expression levels.
DOI: 10.5061/dryad.s98q453/31
title: Annotation_transcripts_containing_outliers

description: Annotated transcripts with outliers in S. hermonthica growing in Sorghum vs Maize.
DOI: 10.17632/6nynnr5hkn.1
title: Data for: Growth Over the Long Run: Historical National Accounts in International Comparison

description: Data on GDP time series, population and employment
DOI: 10.17632/cdc925rps3.1
title: Geospatial Frequency Analysis Dataset For Fog Computing Based Heterogeneous Networks

description: The dataset comprises the following fields: 1. RegistrationID: This represents the registration id that is created when any new location is visited. 2. SubscriberID: This ID is linked with the customer who visits the location. 3. Date: This field shows the date of making the visit to the location. For our simulation, we have considered the date to be in the last 1 week i.e. from 1st December 2018 to 7th December 2018. 4. Latitude: This represents the latitude of the location. 5. Longitude: This represents the longitude of the location. This dataset represents the frequency of geospatial data where person visits multiple locations in a week and his data is captured/simulated to compile this dataset.
DOI: 10.17632/j2g4h77fbh.1
title: Data for: Instrumental investigation of oxygen isotopes in human dental enamel from the Bronze Age battlefield site at Tollense, Germany

description: SIMS data from Tollense De Enamel
DOI: 10.17632/j6d4kwnzkk.1
title: Data for: Reexamining the Role of Advisers for Enhancing the Quality of Research Programs in Thai Universities

description: Secondary sources of data uploaded
DOI: 10.5061/dryad.1bm144m/1
title: azi.cn_height_cover_biomass_data

description: Data were collected in azi.cn (one site of Nutrient Network) during the 5th year of nutrient addition and/or herbivore exclusion. Abbreviated headlines are as follows: "trt" = treatment; "N" = N addition; "P" = P addition; "K" = K addition; "NP" = N & P addition; "PK" = P & K addition; "NK" = N & K addition; "NPK" = N & P & K addition; " latin_name" = species latin name.
DOI: 10.5061/dryad.1bm144m/2
title: 5_sites_height_cover_SRU_biomass_richness_data

description: Data were collected in 5 sites of Nutrient Network (azi.cn, cbgb.us, frue.ch, sgs.us, shps.us) during the 3-5th year of nutrient addition and/or herbivore exclusion. Abbreviated headlines are as follows: "trt" = treatment; "N" = N addition; "P" = P addition; "K" = K addition; "NP" = N & P addition; "PK" = P & K addition; "NK" = N & K addition; "NPK" = N & P & K addition; "latin_name" = species latin name; "live_mass" = living biomass in each plot.
DOI: 10.5061/dryad.2r5k78d/1
title: OAA test script

description: This file includes an R script to compute the Overlapping Area test using the data of a fully-mapped cryophilic grassland in Sierra de Guadarrama National Park (Spain), where the crown of each individual plant (i.e. their canopy) for a total of 11 species was approximated by a polygon. The summary statistic employed in the test (i.e. result5) is the overall sum of the overlapping areas of intersecting polygons between each species pair. The observed overlapping area (i.e., the real overlapping area) is the first value in the vector, and the subsequent ones (i.e. 9999) are the overlapping areas of randomly simulated spatial configurations
DOI: 10.5061/dryad.2r5k78d/2
title: OA observed and simulated values

description: This file includes a large array (result5) for using in R, that represents the summary statistic employed in the OAA test. This array is the overall sum of the overlapping areas of intersecting polygons between each species pair. The observed overlapping area (i.e., the real overlapping area) is the first value in the vector, and the subsequent ones (i.e. 9999) are the overlapping areas of randomly simulated spatial configurations
DOI: 10.5061/dryad.2r5k78d/3
title: Overlapptest tutorial

description: This file includes an R script tutorial that explains how to conduct an overlapping area analysis, as in Pescador et al. (in press) “The shape is more important than we ever thought: plant to plant interactions in a high mountain community”, using the overlapptest package.
DOI: 10.5061/dryad.2r62k7s/1
title: Mammal brain size data for 1522 species

description: Brain size (grams), body size (grams), sample size (when reported), and sex (when reported) for 1522 species compiled from 54 published references.
DOI: 10.5061/dryad.3bq1qm4/1
title: Muench_Quirk_Data_2019

description: This data was used for Muench & Elsey-Quirk 2019. the data was collected in the field and lab.
DOI: 10.5061/dryad.57hr00q/6
title: orthomam_handpicked.tar.gz

description: Results of the pipeline on the Orthomam tree with branches hand-picked arbitrarily.
DOI: 10.5061/dryad.57hr00q/7
title: real_data.tar.gz

description: Analysis of the Cyperaceae and Amaranthaceae empirical data sets.
DOI: 10.5061/dryad.57hr00q/8
title: simulation_details.tar.gz

description: Details of the simulations used.
DOI: 10.5061/dryad.5rj88j5/1
title: Competitive social environment-Dryad
DOI: 10.5061/dryad.6v03s1s/5
title: Appendix D5

description: Filtered variant data.
DOI: 10.5061/dryad.6v03s1s/6
title: Appendix D6

description: Phenotypic data for individual plants.
DOI: 10.5061/dryad.6v03s1s/7
title: Appendix D7

description: Raw climatic data for sampling locales.
DOI: 10.5061/dryad.7hp0168/1
title: Babiana_ringens_measurement_data

description: Raw measurements of each plant used in the study to calculate population averages used for all relevant statistics.
DOI: 10.5061/dryad.80nf679/1
title: Multiple N processes in the microcosms

description: This data file includes rates of N removal and three key processes contributing to N removal (plant uptake, denitrification and substrate adsorption) in response to changes in plant diversity (plant species richness, identity and composition). Pa, Phragmites australis; Ta, Typha angustifolia; Cl, Coix lacryma-jobi; and Ac, Acorus calamus.
DOI: 10.5061/dryad.82v52rd/1
title: Supporting Information for the paper "A meta-analysis reveals global patterns of sediment effects on marine biodiversity"

description: List of studies included in the meta-analysis, including all information details, effect size, variability and the respective weights
DOI: 10.5061/dryad.917hb55/2
title: LC-MS peptide hydroxylation assay data files: Control 31-70

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.917hb55/3
title: LC-MS peptide hydroxylation assay data files: PHD1 1-30

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.917hb55/4
title: LC-MS peptide hydroxylation assay data files PHD1 31-70

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.917hb55/5
title: LC-MS peptide hydroxylation assay data files: PHD2 1-30

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.917hb55/6
title: LC-MS peptide hydroxylation assay data files: PHD2 31-70

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.917hb55/7
title: LC-MS peptide hydroxylation assay data files: PHD3 1-30

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).