cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25417/uic.19164125.v1
title: Survey data_health related informatics education opportunities at ALA or iSchool institutions

description: This dataset is associated with the article "Library or iSchool involvement in health-informatics education" by Journal of eScience Librarianship published in 2022. <br><br>The data is presented as a CSV file. It was originally collected as a survey of library and iSchool directors through the Qualtrics online survey platform.
DOI: 10.6084/m9.figshare.13366025.v1
title: Code Sharing Survey 2020 - PLOS Computational Biology

description: This data was collected by PLOS to understand attitudes towards code sharing by the computational biology research community and related disciplines.The survey was conducted between 17th September 2020 and 1st October 2020 and was distributed to previous PLOS Computational Biology authors and other registered users.Authors were screened based on whether or not their previous publications had generated code. Those authors that had not generated any code where disqualified after this question (Q6) and did not complete the survey.<br>Files in this dataset:PLOS_code-sharing-survey-questions_2020.pdf - survey questionsHarney-et-al_Code-Sharing-Survey-2020-PLOS-Computational-Biology.xlsx - raw data from the survey.<br><br>AnonymisationRespondents were asked to specify which country they were located in. This data has been removed and replaced with continent level data. This has been done to remove the risk of identifying respondents based on combining answers to the survey. The report was based on the country level answers but does not include any identifying information, for example, the numbers of respondents from the USA was highlighted and regions may have been sub-divided, e.g. Central America, Middle East. Free text comments related to question 14 in the survey ("Do you have any additional thoughts you would like to share?") have been removed.
DOI: 10.6084/m9.figshare.28731455.v1
title: <b>Table 4</b> <i>Comparative analysis of the image of the university in the USSR and in modern Russia by integrated components</i>

description: The table is a part of a scientific article and includes a comparative analysis of the image of the university in the USSR and in modern Russia by integrated components
DOI: 10.6084/m9.figshare.5419171.v1
title: Supplementary Material for: Intracellular Signaling Pathways Regulate Hormone-Dependent Kallikrein Gene Expression

description: <i>Objectives:</i> Our aim was to examine how certain signal transduction pathways influence the regulation of hormone-dependent kallikrein <i>(KLK) </i>gene expression in androgen-sensitive breast cancer cell lines. <i>Methods:</i> We used the breast cancer cell lines T47D and BT474, treated with steroid hormones or various pathway inhibitors. KLKs were quantified by ELISA. RT-PCR, Western blots and immunoprecipitations were used to assess transcript and protein levels. <i>Results:</i><i>PSA, KLK10, KLK11, KLK13</i> and <i>KLK14</i> are upregulated upon androgen stimulation in the T47D cell line. The expression of <i>PSA, KLK10 </i>and <i>KLK11 </i>was repressed by the MEK1/2 inhibitor U0126 and the PI3K inhibitor Wortmannin in the presence of the hormone, thus implicating the RAS/MEK/ERK and PI3K/AKT signaling pathways in regulating hormone-dependent <i>KLK</i> gene activation. Analysis of inhibitor-treated cells revealed changes in c-MYC expression with a pattern parallel to <i>KLK</i> gene expression. Chromatin immunoprecipitations identified androgen-dependent recruitment of specific transcription factors to the KLK proximal promoters, including c-MYC binding to <i>PSA</i> and <i>KLK11</i>. <i>Conclusion:</i> The hormone-specific upregulation of <i>PSA, KLK10</i> and <i>KLK11</i> in the breast cancer cell line T47D is dependent on major intracellular signaling pathways. This work provides a new dimension to the regulation of these cancer-related genes and the potential for new therapeutic targeting strategies.
DOI: 10.15131/shef.data.5711803.v1
title: British Transportation Registers, 1787-1867

description: This dataset is an enhanced version of the British Transportation Registers Database, created by the State Library of Queensland. The information given includes the name of the prisoner, date of transportation and ship, sentence and information about conviction. <br>The transportation registers include convicts from England, Wales and Scotland, and cover the entire period of convict transportation to Australia from 1787 to 1867. The registers are particularly useful for confirming whether prisoners who had been sentenced to transportation were in fact transported, as well as including information about those who died during the voyage, and to which colonies they were sent.<br>
DOI: 10.6084/m9.figshare.17065154.v1
title: Clustering_Time_Series_Script

description: RStudio Script for XRF Elemental data Clustering and Time Series Analysis on ln Ca/Ti
DOI: 10.6084/m9.figshare.24030000.v1
title: NZ longfin eel PSAT data 2019

description: Data collected from PSATs for New Zealand longfin eels (<i>Anguilla dieffenbachii</i>).Analysis and interpretation of these data are provided in two publications:Franklin et al. (In review) Oceanic migration routes and behaviour of the New Zealand longfin eel (<i>Anguilla dieffenbachii</i>). <i>Marine Ecology Progress Series</i>Jellyman et al. (In review) Evidence of marine predation of silver <i>Anguilla dieffenbachii</i>. <i>Fisheries Management and Ecology</i>
DOI: 10.6084/m9.figshare.28715309.v1
title: chartex_results.png

description: Chart OCR model performance
DOI: 10.6084/m9.figshare.13102949.v1
title: Genotypic data

description: 95K high-quality GBS-SNPs identified in 318 Nepali wheat accessions.
DOI: 10.6084/m9.figshare.28156478.v1
title: elemental_leaves.csv

description: Elemental chemistry (carbon and nitrogen) of shoot tissues of leaf green species grown in aquaponics or small containers with soil.
DOI: 10.6084/m9.figshare.3101947.v3
title: synergy and redundancy

description: Regions which form synergetic and redundant duplets with representative regions, separately selected among cerebrum and cerebellar regions as those maximizing the overall informational contributions. Regions are indicated by spheres centered in the MNI coordinates. The size of the spheres is proportional to the value of the duplet formed by the region and the representative one, depicted in black. The same scale as Figure 6 applies.
DOI: 10.6084/m9.figshare.5129110.v1
title: Supplementary Material for: Erwartungsfokussierte Psychotherapeutische Interventionen (EFPI)

description: Erkenntnisse der Placebo-Forschung legen nahe, dass Erwartungen in Bezug auf die Wirksamkeit einer Behandlung ein entscheidender Prädiktor für den tatsächlichen Behandlungserfolg sind. Dieser Einfluss von Erwartungen wurde sowohl für die Behandlung von körperlichen Erkrankungen als auch von psychischen Störungen nachgewiesen. Bei psychischen Störungen spielen neben den Erwartungen an den Behandlungserfolg noch weitere Erwartungen eine wichtige Rolle. Dazu gehören störungsspezifische Erwartungen (z.B. Erwartungen bezüglich des Eintretens eines katastrophalen Ereignisses bei Patienten mit Angststörungen) ebenso wie Erwartungen über sich selbst und andere (z.B. «Andere werden mich ablehnen, wenn sie meine wahre Persönlichkeit kennenlernen»). Das Modell der Erwartungsverletzung (engl. expectation violation = ViolEx) stellt dar, wie Erwartungen bei psychischen Störungen entstehen, wie sie sich verändern und warum sie trotz gegensätzlicher Erfahrungen oft persistieren. Darauf aufbauend stellen wir einen Behandlungsansatz mit Fallbeispielen vor, der psychotherapeutische Interventionen durch das Fokussieren auf Patientenerwartungen optimieren kann (Erwartungsfokussierte psychotherapeutische Interventionen; EFPI). Zwar beinhalten einige etablierte psychotherapeutische Interventionen bereits (zum Teil implizit) erwartungsmodifizierende Elemente, doch EFPI stellen einen fokussierteren Ansatz dar, mit dessen Hilfe die Gründe für wenig erfolgreich verlaufende Therapien identifiziert werden und Ansatzpunkte für weitere Interventionen gefunden können.
DOI: 10.6084/m9.figshare.25927168.v1
title: H15_Wh

description: Energy related data for House 15
DOI: 10.6084/m9.figshare.3520964.v1
title: Appendix B. Linear mixed-effects model results for time series analysis of community composition.

description: Linear mixed-effects model results for time series analysis of community composition.
DOI: 10.6084/m9.figshare.24291169.v1
title: Data on pollen chemistry and pollen retrieval using the different methodologies

description: Here, we designed and tested a novel, easy-to-assemble tool for pollen sampling: E-PoSa (Electronic Pollen Sampler), based on the use of a portable vacuum cleaner. We compared it with some of the most used sampling methods for pollen (i.e., anthers sieving and sampling of the whole anthers) by looking at the differences in their quantitative recovery and nutritional profile.
DOI: 10.6084/m9.figshare.17430482.v1
title: Permanent Magnet Tracking Method Resistant to Background Magnetic Field for Assessing Jaw Movement in Wearable Devices

description: Abstract. There is a large gap between primitive bruxism detectors and sophisticated clinical machines for jaw kinematics evaluation. Large, expensive clinical appliances can precisely record jaw motion, but completely restrain the patient for the duration of the test. Wearable bruxism detectors allow to continuously count and record bites but provide no information about jaw movement trajectories. Previously, we have developed a permanent magnet and 3-axial magnetometer-based method for wearable, intra-oral continuous jaw position registration. In this work, we present an effective solution to the two main drawbacks of the method. Firstly, two-adjacent-magnetometer approach is able compensate for background magnetic fields with no reference sensor outside of the systems magnetic field. Secondly, jaw rotational angles were included into position calculations, by applying trigonometric equations that links translation of the jaw to its rotation. This way we were able to use 3-DOF (degree-of-freedom) magnetic position determination method to track positions of 5-DOF human masticatory system. To validate the method, finite element modeling and 6-DOF robotic arm (0.01 mm, 0.01 deg) was used, which showed 65% increase in precision to average RMSE = 0.17 mm. The method potentially can be utilized in small scale, low-power, wearable intra-oral device for continuous jaw motion recording.<br>One dataset consists of magnetic field values of main and the reference sensor and their calibration values - data needed for position estimation presented in the publication.<br>There are separate datasets for finite element model test, static positioning test and dynamic test. <br>B field values in dataset are arranged in the following order:[Bx By Bz Brefx Brefy Brefz].<br><br>Data is in -32768 to 32768 format, representing -4900 to 4900 uT.<br>
DOI: 10.6084/m9.figshare.25513252.v1
title: Dataset Beliefs

description: this is the dataset of the study
DOI: 10.6084/m9.figshare.830442.v2
title: Software Engineering Need not be Difficult

description: Position paper on how to apply the principles of software engineering and agile methods to support sustainable scientific software. Accepted at the WSSSPE workshop at SC 13.
DOI: 10.6084/m9.figshare.22490893.v1
title: exams.csv

description: testes
DOI: 10.6084/m9.figshare.22779836.v1
title: <strong>HIV-1 subtype diversity and immuno-virological outcomes among adolescents</strong> <strong>failing antiretroviral therapy</strong> <strong>in Cameroon: A cohort study</strong> dataset

description: A cohort study was conducted from 2018-2020 among 311 adolescents living with perinatally acquired HIV (APHI) receiving antiretroviral therapy (ART) in one of the selected health facilities within the <em>“Resistance Evolution among Adolescents in Yaoundé and its surroundings” (READY-study)</em> in the Centre region of Cameroon. Participants were recruited following consecutive and exhaustive sampling. Follow-up was performed at enrollment (Phase 1), at 6 months (Phase 2), and 12 months (Phase 3).
DOI: 10.6084/m9.figshare.28678397.v1
title: <b>Radical hemithorax radiotherapy induces an increase in circulating PD-1</b><sup><strong>+ </strong></sup><b>T lymphocytes and in the soluble levels of PD-L1 in Malignant Pleural Mesothelioma patients: a possible synergy with PD-1/PD-L1 targeting treatment?</b>

description: Malignant Pleural Mesothelioma (MPM) is an aggressive tumor associated with asbestos exposure, characterized by a poor prognosis, managed with surgery, chemotherapy and radiotherapy. Recently, immunotherapy gives a survival advantage compared to chemotherapy, but limited to the non-epithelioid histotype, the rarest type. Radical hemithorax radiotherapy (RHRT) improves the Overall Survival (OS) of MPM patients, irrespective of histotype, and is able to induce immunomodulatory effects. In this study we aime to investigate changes in circulating T lymphocytes phenotype and activity, in MPM patients undergoing RHRT, to evaluate a possible therapeutic space for immunotherapy in this setting.To assess immunomodulatory effects of RHRT we evaluate peripheral blood samples of 35 MPM patients collected before treatment, at the end of RT, and 1 month later. We first notice that higher Lymphocyte-to-Monocyte Ratio (LMR) levels, before RT, are associated with an improved OS. The immune monitoring performed by ELISA assays reveals a significant increase in the serum levels of sPD‐L1 and IFN‐γ at the end of RHRT. Furthermore, the percentage of PD‐1+ cells, evaluated by flow cytometry, significantly raise after RHRT in T cells, both CD4+ and CD8+. Also the proportion of proliferative cells is significantly expanded after RHRT in all T cell subtypes. After treatment we observe a significant increase in the number of patients showing WT-1 specific CD4+ T cells, measured by intracellular staining. The TCR repertoire analysis, investigated by Next Generation Sequencing, reveals an increased number of expanded T-cell clones after RHRT, and an association between TCR clonality and the percentage of proliferating cytotoxic T lymphocytes. The comparison of TCR sequences obtained in our cohort with those described in a literature cohort of MPM patients, reveals common entries, specific for MPM-associated antigens including WT-1.In this setting, pre-treatment levels of LMR index seem to have a positive prognostic role, and RHRT would appear to induce immunomodulating effects, potential biomarkers for immunotherapy eligibility: i.e. increased PD-1+ T lymphocytes, proliferating T cells, expanded T cell clones and augmented levels of sPD-L1. These data suggest the design of a prospective study evaluating a maintenance immunotherapy after RHRT in MPM, even in the epithelioid histotype.
DOI: 10.6084/m9.figshare.19358456.v4
title: Effect of intestinal NHE3 deletion on gut microbiome

description: This study analyzes the differential abundance of microbiota between intestine-specific NHE3 knockout and control mice.
DOI: 10.6084/m9.figshare.28856039.v1
title: Dental radiographs.zip

description: The <b>Dental Radiographs Dataset</b> refers to a collection of X-ray images of teeth and the surrounding oral structures, typically used for diagnostic purposes in dentistry. These radiographs (or X-rays) help dental professionals assess the condition of teeth, detect cavities, identify bone loss, monitor the alignment of teeth, and diagnose other dental conditions.
DOI: 10.6084/m9.figshare.23691672.v3
title: <b>Microplastic emission and socioeconomic data of fashion industry in Chinese cities from 2001 to 2020</b>

description: Microplastic pollution is one of the emerging global environmental issues. The fashion industry is a major source of microplastic pollution due to the massive consumption of synthetic fibres. Textile, garment, and footwear manufacturing contribute to the microplastic emission into sewage waters. Cities are major contributors to microplastic emissions and the implementers of microplastic control. It is important to compile the inventories of microplastic emissions of the fashion industry for cities, and fewer studies have investigated the inventories of microplastic emissions for key industries in cities. This study, for the first time, compiles microplastic emission inventories of the fashion industry for Chinese cities. The inventories are constructed using 21 cities and 4 production processes of the fashion industry. The socioeconomic data of the fashion industry in cities such as the output of industrial products and the gross output value of the fashion industry are included in the datasets as well. The dataset can provide transparent, comparable, and verifiable data support for the microplastic pollution prevention and control strategies in the fashion industry, and provide references for the construction of microplastic emission inventories for other key industries.
DOI: 10.6084/m9.figshare.24872973.v1
title: Limited future carbon sink in China as forests become mature

description: This dataset includes calibrated PFT maps, LUC and wood harvest forcing data used in the simulations, as well as the source data for the figures in the main text. Due to the difference in future afforestation scenarios, forcing datasets are divided into two periods, one for historical period and the other for future period. There is no change in the PFT maps after 2061. Historical LUC data includes two parts (net change fraction and land turnover fraction) and the year 1701 represents the change during 1700-1701, while future period only provide net change information. We provided wood harvest data used in the historical S<sub>2</sub> and S<sub>3 </sub>(S<sub>age</sub>) simulations, and in the future S<sub>0</sub>, S<sub>1</sub>, S<sub>2</sub> and S<sub>3</sub> simulations.<br>
DOI: 10.6084/m9.figshare.7246235.v1
title: Supplementary Material for: The Association and Clinical Significance of CDKN2A Promoter Methylation in Head and Neck Squamous Cell Carcinoma: a Meta-Analysis

description: <b><i>Background/Aims:</i></b> The association between cyclin-dependent kinase inhibitor 2A (<i>CDKN2A</i>) hypermethylation and head and neck squamous cell carcinoma (HNSCC) risk has been investigated by a number of studies. However, these studies have not demonstrated consistent results. Moreover, the role of <i>CDKN2A</i> methylation in HNSCC carcinogenesis and its clinical significance remain unclear. <b><i>Methods:</i></b> We performed a systematic meta-analysis based on 72 articles (including 3399 HNSCCs, 668 premalignant lesions, and 2393 normal controls) from the PubMed, Google Scholar, Web of Science, Embase, China National Knowledge Infrastructure and Wanfang databases. <b><i>Results:</i></b> Our study showed a significant increase in the frequency of <i>CDKN2A</i> methylation during HNSCC carcinogenesis (HNSCC vs. normal controls, odds ratio (OR) = 6.72, <i>P</i> &lt; 0.01; HNSCC vs. precancerous lesions, OR = 1.89, <i>P</i> &lt; 0.05; precancerous lesions vs. normal controls, OR = 14.70, <i>P</i> &lt; 0.01). Moreover, <i>CDKN2A</i> methylation was significantly associated with gender (OR = 1.34; <i>P</i> &lt; 0.05) and lymph node metastasis (OR = 2.32; <i>P</i> &lt; 0.01). The area under summary receiver operating characteristic curve (AUC) for diagnosis of HNSCC based on all samples and saliva sample subgroup were 0.77 and 0.96, respectively. Additionally, <i>CDKN2A</i> hypermethylation was significantly associated with shorter overall survival (OS) (hazard ratio (HR) = 1.01, <i>P</i> &lt; 0.05) and recurrence-free survival (RFS) (HR = 1.77, <i>P</i> &lt; 0.05). <b><i>Conclusion:</i></b> Our findings indicate <i>CDKN2A</i> methylation is involved in the carcinogenesis, progression, and metastasis of HNSCC. Furthermore, methylated <i>CDKN2A</i> could be a potential diagnostic and prognostic biomarker for HNSCC.
DOI: 10.6084/m9.figshare.23193494.v1
title: Code and data for: No evidence of reproductive senescence within the natural lifespan in resident mountain chickadees (<i>Poecile gambeli</i>)

description: Reproductive aging in vertebrates is commonly characterized by an increase in reproductive performance early in life and a decline in reproductive performance late in life (i.e. senescence). However, some species do not seem to exhibit reproductive senescence, and others even exhibit increased reproductive performance throughout their lifetimes. Our understanding of the mechanisms that underly this variation in different species remains limited, in particular whether these patterns are driven by female or male contributions to reproduction in sexually-reproducing taxa. Here we report results from a longitudinal study on the relationship between age and reproductive performance in a wild, resident songbird. Our dataset included 698 breeding attempts from 551 unique mountain chickadee (<i>Poecile gambeli</i>) pairs composed of individuals aged 1 through 9 years old. First egg dates, clutch sizes, and brood sizes varied most with female age, whereas mean fledgling mass was best predicted by male age. Both female and male reproductive performance were positively associated with age, but the processes underlying these patterns differed between the sexes. Long-lived individuals of both sexes exhibited higher reproductive performance than short-lived individuals, but females also showed within-individual improvements in reproductive performance with age. In contrast, individual male reproductive performance remained stable with age, suggesting the observed population-level positive association in males was a result of lower survival of low-quality breeders. Our results reveal a lack of reproductive senescence in mountain chickadees within their naturally-observed lifespans and show that age-related reproductive patterns of both sexes can contribute to the reproductive performance of breeding pairs.
DOI: 10.6084/m9.figshare.12298973.v1
title: Supplementary Tables for Pernes et al AJP Reg

description: These tables contain the data from Pernes et al in AJP Reg, Int, Comp, which describes the effects of acute cold exposure at 5 or 22dC relative to 30dC. The tables contain lipid species data from the plasma, liver, brown adipose tissue, white adipose tissue, and skeletal muscle.
DOI: 10.6084/m9.figshare.14842914.v1
title: Metadata record for: An Australian rental housing conditions research infrastructure

description: This dataset contains key characteristics about the data described in the Data Descriptor An Australian rental housing conditions research infrastructure. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.21382662.v1
title: Numerical model for soils with regularly arranged ice cubes

description: The dataset provides 5 numerical models for soils with regularly arranged ice cubes, in the format of COMOSL files and with the ice content=5%, 10%, 15%, 20%, and 25%, respectively.
DOI: 10.6084/m9.figshare.8287067.v1
title: Additional file 12: of A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies

description: Spearman Correlations for PCR DEG models from 10 to 1000 genes presented in figure for section E and Fig.Â 6. (XLSX 39 kb)