cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.tqjq2bw2t
title: Plant characteristics drive ontogenetic changes in herbivory damage in a temperate forest

description: Understanding ontogenetic differences in plant defenses and herbivory
 damage is crucial for obtaining a better understanding of plant
 life-history strategies, community assembly, and dynamics. Although many
 studies have compared plant defenses or herbivory damage between
 ontogenetic stages (e.g., sapling vs. adult), how the effects of plant
 characteristics on leaf herbivory damage change during plant ontogeny has
 rarely been examined across species or in a species-rich natural
 community. To elucidate the effects of plant characteristics, we compared
 the relationships of leaf herbivory damage with stem density, plant size,
 and leaf traits between saplings and adults for almost all co-occurring
 woody species (56 species, ranging from rare to abundant) in a Japanese
 temperate forest. In most species, adults were larger, fewer in number,
 and had leaf traits that were potentially less favorable to herbivores
 (e.g., stronger, or with more phenolics). In contrast, we observed
 species-specific directions of changes in herbivory damage between adults
 and saplings with plant phylogeny or density having no clear effect. The
 relationships between some plant traits and herbivory damage were ontogeny
 dependent, indicating a shift from chemical to physical defense as plants
 mature, although most of the species characteristics studied were highly
 correlated between stages. Such ontogeny-dependent relationships between
 plant traits and herbivory damage could cause variation in the ontogenetic
 changes in herbivory damage among species depending on the value of plant
 traits. Moreover, the direction and magnitude of the effects of
 ontogenetic differences in species traits on the ontogenetic differences
 in herbivory damage varied depending on the traits. Together, these
 factors could have caused the observed ontogenetic changes in herbivory
 damage among species. Synthesis. Our study demonstrated how relationships
 between plant characteristics and herbivory damage can change
 ontogenetically across many coexisting woody species in a forest
 community, suggesting that plant traits may perform different functions
 related to herbivory at different ontogenetic stages. This has rarely been
 considered in previous dualistic comparisons of individual traits and
 herbivory damage between ontogenetic stages, and it is vital for
 understanding plant life-history strategies across stages in relationships
 with herbivores in natural communities.
DOI: 10.5061/dryad.8931zcrth
title: The valence-dominance model applies to body perception

description: First impressions of a person are often based on appearance. The widely
 accepted valence-dominance face perception model (1) posits that social
 judgements of faces fall along two orthogonal dimensions: trustworthiness
 (valence) and dominance. The current study aimed to establish principal
 components of social judgements based on perception of bodies,
 hypothesising that these would follow the same dimensions as face
 perception. Stimuli were black and white photographs showing bodies
 dressed in grey clothing, standing in their natural posture (left
 profile). Raters (N=237) judged the stimuli on 14 traits used in Oosterhof
 and Todorov’s original study (1). Data were analysed using principal
 components (PCA) analysis, as in the original study, with an additional
 exploratory factor analysis using oblique rotation. While PCA analysis
 produced a third dimension in line with several replications of the
 original study, results from the exploratory factor analysis produced two
 dimensions, representing trustworthiness and dominance, providing support
 for the hypothesis that social perceptions of bodies can be summarised
 using the valence-dominance model. These two factors could represent
 universal perceptions we have about people. Future research could explore
 social judgements of humans based on other stimuli, such as voices to
 evaluate whether trustworthiness and dominance dimensions are consistent
 across modalities.
description: Raters (N=237) judged 121 photographs (stimuli) via Qualtrics on
 14 traits. Stimuli were collected by photographing 63 female and 58 male
 volunteers. 
description: We used JASP, an open-source statistics program version 0.92 and
 0.16.2.0, and RStudio, version 1.2.5019.
DOI: 10.5061/dryad.gqnk98srs
title: The effects of temperature extremes on survival in two semi-arid Australian bird communities over three decades, with predictions to 2104

description: Aim: Organisms in arid and semi-arid regions are frequently exposed to
 climatic extremes and accordingly among the most vulnerable to climate
 change. Studies of seasonal differences in vital rates, which mediate
 effects of climate on viability, are rare in arid species limiting ability
 to project population trends. We quantified survival patterns for two bird
 communities as a function of expo-sure to temperature extremes in winter
 and summer, then project survival patterns to 2104. Location: semi-arid
 eastern Australia Time period: 1986-2016; 1986-2104 Major taxa studied:
 Birds Methods: Using mark recapture time-dependent Cormack-Jolly-Seber
 models and data for 37 species from two 30-year ringing programs, we
 tested for effects on 6-monthly survival of expo-sure to temperatures
 &gt;38oC and &lt;0oC. We then predicted future survival for
 different emission scenarios, testing whether changes in survival
 associated with warming winters would be suffi-cient to offset the effects
 of rising summer temperatures. Results: Survival probability declined
 strongly with increasing exposure to days &gt;38oC and to a lesser
 extent to days &lt;0oC, with temperature extremes explaining 43% and
 13% of temporal varia-tion in survival among years, respectively. Summer
 survival patterns were similar across avian guilds but only survival of
 nectarivores declined in winter. Our models predict that gains in winter
 survival will not offset reductions in summer survival. Annual survival is
 predicted to decline sub-stantially by the end of the century: from 0.63
 in 1986 to 0.43 in 2104 under an optimistic emis-sion scenario and to 0.11
 under a pessimistic scenario. Main conclusions: We highlight the
 significance of temperature extremes for species’ persistence in arid and
 semi-arid regions, comprising 70% of Australia’s land mass, and 40%
 globally. Our demography-based results are consistent with
 physiological-based projections evaluating avian survival in arid and
 semi-arid regions globally and suggest rising summer temperatures pose a
 risk to population persistence in these regions.
DOI: 10.5061/dryad.sj3tx967p
title: Disentangling the effects of biomass and productivity in plant competition

description: The relationship between competition and productivity in plant communities
 is unclear, likely due to (i) a confusion in the literature between
 productivity and biomass, (ii) the lack of studies assessing variation in
 competition in all combinations of biomass and productivity. We assessed
 the outcome of plant-plant interactions by removing neighbors around five
 focal species in 14 herbaceous communities with contrasting biomasses and
 productivities: meadows with high biomass and productivity, heathlands
 with high biomass and low productivity, understorey communities of
 deciduous forests with low biomass and high productivity and calcareous
 grasslands with low biomass and low productivity. Competition intensity
 was quantified with the relative interaction index (RII) calculated for
 both survival and growth of the transplanted targets assessed with the
 increase in leaf number. To examine which traits better explain variation
 in competition and what drives variation in diversity, we e also
 quantified litter decomposition rate, species composition and diversity
 and six morphological traits related to plant size and growth rate for
 eight dominant species of each community. Our main questions were: (i) is
 competition mostly related to biomass or productivity? (ii) which traits
 of the community dominants better explain variation in competition? (iii)
 is variation in competition and related-traits correlated with variation
 in diversity? Competition for survival significantly increased with
 increasing community biomass (but not productivity). In addition,
 competition for survival increased with the size traits and competitive
 effects of the dominant species of the communities, while diversity
 decreased. Competition for growth also increased with increasing
 productivity, but only for high biomass communities. Additionally, the
 increase in competition for growth with increasing soil fertility, as
 measured with litter decomposition rate, was only due to an increase in
 target growth in plots without neighbors and was unrelated to community
 competitive effects and species diversity. The results of our study
 illustrate how the confusion between productivity and biomass could have
 contributed to the longstanding debate on variation in competition along
 productivity gradients and its consequence for diversity.
description: Removal method.
DOI: 10.5061/dryad.6wwpzgn2b
title: Data from: Evolutionary divergence via sexual selection acting on females in a species with sex role reversal

description: 1. There is much evidence that sexual selection drives the evolutionary
 divergence of male sexual traits, but little is known of females. 2.
 Comparisons between neutral genetic divergence (FST) and phenotypic
 divergence (PST) among populations can reveal evolutionary responses to
 selection. 3. In the bushcricket Kawanaphila nartee, changes in floral
 food availability cause sex roles to shift from competitive females and
 choosy males to choosy females and competitive males midway through the
 breeding season. Males call to attract females, and female auditory
 spiracle size is under sexual selection. We ask whether selection on
 females can drive an evolutionary divergence in auditory spiracle size
 among populations. 4. We sampled 188 individuals from nine geographic
 locations and analysed 9,478 neutral SNP loci and two phenotypic
 characters to estimate FST and PST, respectively. 5. We found that PST for
 female auditory spiracle size far exceeded the global FST, suggesting that
 female auditory spiracle size is subject to strong directional selection.
 We relate differences in phenotypic traits to differences in geological
 and floristic characteristics among the sites. 6. Our data suggest that
 variation in sexual selection driven by variation in the floristic
 community on which this species feeds may contribute to the strength of
 directional selection acting on female K. nartee among populations. 7.
 Together, these findings indicate that divergence among populations can be
 driven by sexual selection acting on females, even when that selection is
 temporary and circumscribed.
description: All data is reproducible using R (and various packages).
DOI: 10.15468/dl.as9ssz
title: Occurrence Download

description: A dataset containing 675525 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is DATASAPROX : standardised database of saproxylic beetles from flight interception traps in continental France and Corsica"
 ]
}

 The dataset includes 675525 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003217-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2547d7wtj
title: Network analysis with either Illumina or MinION reveals that detecting vertebrate species requires metabarcoding of iDNA from a diverse fly community

description: DNA obtained from invertebrates (iDNA) can be metabarcoded in order to
 survey vertebrate communities. Here, we tested for specialization by
 sampling the dung and carrion fly community of a swamp forest remnant
 along a disturbance gradient (10 sites: 80–310 m from a road). This
 dataset contains Illumina and MinION datasets corresponding to
 metabarcoding experiments on 435 fly faecal samples. This involved the
 amplification of 3 genes (COI 244-bp fragment, COI 313-bp fragment, and
 16S) from fly faeces and regurgitates dissolved in water. Three PCR
 replicates were conducted for each gene and sequenced using Illumina
 sequencing. One replicate was then sequenced using a MinION flowcell.
 Flies were also independently barcoded using MinION and barcodes are
 included in the dataset. 
description: Illumina paired-end datasets
 corresponding to 3 PCR replicates for 3 genes: COI: 244-bp
 Vert-COI-flypoop-rep[1/2/3]_R[1/2]_001.fastq.gz, COI 313-bp:
 flypoopleray-[1/2/3]-LDJ9962_L1_[1/2].fq.gz, 16S:
 16S-flypoop-rep[1/2/3]_R[1/2]_001.fastq.gz: Analysed using
 OBITools.  MinION basecalled datasets corresponding to
 1 PCR replicate for 3 genes: 16S: 16s_flypoop_apr22.fastq.gz, COI 244-bp:
 244COI_sup.fastq.gz, COI 313-bp: lerayminion_all.fastq.gz: Using
 ONTbarcoder and BLAST.
DOI: 10.5061/dryad.r4xgxd2gh
title: Data from: The endocast of Euparkeria sheds light on the ancestral archosaur nervous system

description: Understanding the evolution of the tetrapod brain is essential to trace
 the history of ecomorphological diversification of modern clades. While
 previous studies focused on the morphological transformation of the
 nervous system along the dinosaur-bird transition, little is known about
 the brain anatomy of archosauriformes and early archosaurs. Here, we
 describe the endocast of Euparkeria capensis, a small-bodied, terrestrial
 archosauriform closely related to Archosauria, with the goal of resolving
 the current uncertainties surrounding the ancestral condition of the
 archosaurian nervous system. The endocast of Euparkeria is sigmoidal, with
 large olfactory bulbs, an expanded cerebral hemisphere and an elongated
 flocculus. We suggest that this pivotal taxon was an active predator with
 a remarkable olfactory acuity. Overall, the endocast of Euparkeria
 resembles the ones observed in phytosaurs, crocodilians and early
 dinosaurs, implying that modern crocodilians retain an archosaurian
 plesiomorphic brain morphology.
DOI: 10.5061/dryad.w3r2280tt
title: The relative influence of sea surface temperature anomalies on the benthic composition of an Indo-Pacific and Caribbean coral reef over the last decade

description: Rising ocean temperatures are the primary driver of coral reef declines
 throughout the tropics. Such declines include reductions in coral cover
 that facilitate the monopolisation of the benthos by other taxa such as
 macroalgae, resulting in reduced habitat complexity and biodiversity. Long
 term monitoring projects present rare opportunities to assess how sea
 surface temperature anomalies (SSTAs) influence changes in the benthic
 composition of coral reefs across distinct locations. Here, using
 extensively monitored coral reef sites from Honduras (in the Caribbean
 Sea), and from the Wakatobi National Park located in the centre of the
 coral triangle of Indonesia, we assess the impact of global warming on
 coral reef benthic compositions over the period 2012-2019. Bayesian
 Generalised Linear Mixed effect Models revealed increases in sponge, and
 hard coral coverage through time, while rubble coverage decreased at the
 Indonesia location. Conversely, the effect of sea surface temperature
 anomalies (SSTA) did not predict any changes in benthic coverage. At the
 Honduras location, algae and soft coral coverage increased through time,
 while hard coral and rock coverage were decreasing. The effects of SSTA at
 the Honduras location included increased rock coverage, but reduced sponge
 coverage, indicating disparate responses between both systems under SSTAs.
 However, redundancy analyses showed intra-location site variability
 explained the majority of variance in benthic composition over the course
 of the study period. Our findings show that SSTAs have differentially
 influenced the benthic composition between the Honduras and the Indonesia
 coral reefs surveyed in this study. However, large intra-location variance
 which explains the benthic composition at both locations indicates that
 localised processes have a predominant role for explaining benthic
 composition over the last decade. The sustained monitoring effort is
 critical for understanding how these reefs will change in their
 composition as global temperatures continue to rise through the
 Anthropocene.
DOI: 10.5061/dryad.s7h44j19f
title: Pollination deficits and contributions of pollinators in apple production: a global meta-analysis

description: 1. Apple is one of the most widely cultivated fruit crops worldwide, and
 apple yield benefits from pollination by insects. The global decline in
 wild pollinator populations raises concern about the adequacy of
 pollination services in apple production. 2. Here, we present a global
 meta-analysis of pollination in apple. We assembled from the literature a
 dataset comprising results of 48 studies across five continents on fruit
 set and seed set in apple with insect pollination, artificial pollination
 and pollinator exclusion, and analysed the effects of explanatory factors
 such as variety and continent. 3. Fruit set was on average 41% lower with
 open pollination than with artificial pollination, while seed set was 20%
 lower. These pollination deficits varied across continents and cultivars.
 Pollination deficits for fruit set were greatest in Asia (63%) followed by
 Europe (30%), whereas pollination deficits for seed set were greatest in
 Asia (47%) and South America (40%). Important differences in pollination
 deficit were also identified between cultivars but these differences were
 confounded with continent effects. 4. Fruit set and seed set were 71% and
 62% higher, respectively, when insects had open access to flowers than
 when they were artificially excluded, while results varied among
 cultivars. 5. Synthesis and Applications. Globally, there are substantial
 contributions of pollinators to fruit set and seed set in apple, as well
 as considerable limitations in apple pollination services, particularly in
 Asia, Europe and South America. Several management strategies could be
 applied to reduce the pollination deficits in apple production: (1)
 conserving wild bees and enhancing their abundance and diversity, (2)
 using managed bees for pollination, (3) using varieties with low
 pollinator dependency, and/or (4) artificial pollination. These strategies
 should be tailored to the regional situation, considering the potential of
 landscapes for restoring wild pollinators, the acceptability of cultivated
 varieties for available pollinators, the acceptance in the market of
 self-compatible varieties, and the costs of management, such as artificial
 pollination, pollinator conservation, beekeeping and planting
 self-compatible varieties. Conservation of wild pollinators is preferred
 in regions with sufficient potential for wild pollinators as it
 contributes to biodiversity conservation and improves pollination in both
 crops and wild plants.
description: Data were collected through a systematic literature search and
 study selection. Data collected as described in methods.
description: Data for pollination deficits and contribution of pollinators in
 apple production from 48 studies, and the statistical code is
 provided.
DOI: 10.5061/dryad.dbrv15f4d
title: Validation of Sepsis-3 using survival analysis and clinical evaluation of quick SOFA, SIRS, and burn-specific SIRS for sepsis in burn patients with suspected infection

description: Purpose: Sepsis-3 is a life-threatening organ dysfunction caused by
 dysregulated host responses to infection; and defined using the Sepsis-3
 criteria, introduced in 2016, however, the criteria need to be validated
 in specific clinical fields. We investigated mortality prediction and
 compared the diagnostic performance of quick Sequential Organ Failure
 Assessment (qSOFA), systemic inflammatory response syndrome (SIRS), and
 burn-specific SIRS (bSIRS) in burn patients. Methods: This single-center
 retrospective cohort study examined burn patients in Seoul, Korea during
 January 2010–December 2020. Overall, 1,391 patients with suspected
 infection were divided into four sepsis groups using SOFA, qSOFA, SIRS,
 and burn-specific SIRS. Results: Hazard ratios (HRs) of all unadjusted
 models were statistically significant; however, the HR (0.726, p =
 0.0080.001) in the SIRS ≥2 group is below 1. In the adjusted model, HRs of
 the SOFA ≥2 (2.426, p &lt; 0.001), qSOFA ≥2 (7.198, p &lt; 0.001),
 and SIRS ≥2 (0.575, p &lt; 0.001) groups were significant. The
 diagnostic performance of dichotomized qSOFA, SIRS, and bSIRS for sepsis
 was defined by the Sepsis-3 criteria. The mean onset day was 4.13±2.97
 according to Sepsis-3. The sensitivity of SIRS (0.989, 95% confidence
 interval [CI]: 0.982–0.994) was higher than that of qSOFA (0.841, 95% CI:
 0.819–0.861) and bSIRS (0.803, 95% CI: 0.779–0.825). Specificities of
 qSOFA (0.929, 95% CI: 0.876–0.964) and bSIRS (0.922, 95% CI: 0.868–0.959)
 were higher than those of SIRS (0.461, 95% CI: 0.381–0.543). Conclusion:
 Sepsis-3 is a good alternative diagnostic tool because it reflects sepsis
 severity without delaying diagnosis. SIRS showed higher sensitivity than
 qSOFA and bSIRS and may therefore more adequately diagnose sepsis.
description: The electrical medical records
 were anonymized and retrieved from the clinical database warehouse in
 Hangang Sacred Heart Hospital, Hallym University, Seoul, Korea. The
 database consists of structured data collected prospectively for all
 patients admitted to the BICU. 1,391 burn patients with a
 suspected infection between January 2010 and December 2021 were
 included. The
 electrical medical records were anonymized and retrieved from the clinical
 database warehouse in Hangang Sacred Heart Hospital, Hallym University,
 Seoul, Korea. The database consists of structured data collected
 prospectively for all patients admitted to the BICU. Patient
 demographics such as age, sex, comorbidities, and variables for
 burn-specific scoring systems such as the Abbreviated Burn Severity Index
 (ABSI), Hangang, and revised Baux (rBaux) scores were calculated for each
 patient upon admission.
description: Data management and
 statistical analysis were performed using R (A language and environment
 for statistical computing, Vienna, Austria, Version
 4.1.0).
DOI: 10.15468/dl.4qdfur
title: Occurrence Download

description: A dataset containing 4966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Ohio State University Tetrapod Division - Amphibian Collection (OSUM)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is Continent derived from coordinates",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4966 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003228-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.