cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3991930
title: Brightfield images: p176

description: This repository constains all the brightfield plate scans plate p176 for the project: <strong>A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids</strong> Vito RT Zanotelli<br> Matthias Leutenegger<br> Xiao‐Kang Lun<br> Fanny Georgi<br> Natalie de Souza<br> Bernd Bodenmiller <em>Mol Syst Biol. (2020) 16: e9798</em><br> https://doi.org/10.15252/msb.20209798 <em>Please cite this article if you re-use any of the data or code.</em> Each plate acquisition follows the naming scheme: '{date}-{operator}-Spheroid-{plate}[rev]-{dps}-ac{acnr}_Plate_{acquisitionid} eg. 20180203-Vito-Spheroid-p173-2dps-ac1_Plate_13146 20180204-Vito-Spheroid-p173rev-3dps-ac1_Plate_1315 With: date: acquisition date operator: microscope operator plate: plate number rev: optional, if there indicates that the plate has been rotated 180 degree. E.g. well A01 will be well H12. dps: days post seeding ac: manual acquisition number (e.g. if acquisition needed to be repeated) acquisitionid: machine provided unique acquisition id Each folder contains: HTD files which contains acquisition metadata in text form. TimePoint_1: a folder containing all the acquisitions in .tiff form with the suffix _{wellname}_w{channel} In this acquisition 3 channels were used, which correspond to 3 brightfield images at 3 different z positions. An ImageXpress Micro XL Widefield High Content Imaging microscope (Molecular Devices, 4x objective, NA 0.20) was used for the acquisition.
DOI: 10.6084/m9.figshare.13283717
title: Raw data Matz et al. JES 2020 Demonstration of electrochemically-driven CO2 separation using hydroxide exchange membranes

description: Raw data supporting the figures in Matz et al., Journal of the Electrochemical Society, "Demonstration of electrochemically-driven CO<sub>2</sub> separation using hydroxide exchange membranes", (2020) (under review at time of upload).
DOI: 10.6084/m9.figshare.13283717.v1
title: Raw data Matz et al. JES 2020 Demonstration of electrochemically-driven CO2 separation using hydroxide exchange membranes

description: Raw data supporting the figures in Matz et al., Journal of the Electrochemical Society, "Demonstration of electrochemically-driven CO<sub>2</sub> separation using hydroxide exchange membranes", (2020) (under review at time of upload).
DOI: 10.15482/usda.adc/1520625
title: Agricultural land use by field: Wisconsin 2010-2019
DOI: 10.15482/usda.adc/1520626
title: Agricultural land use by field: Minnesota 2010-2019
DOI: 10.6084/m9.figshare.13497138
title: hs_SRS_fluo_images.zip

description: Hyperspectral SRS and corresponding organelle fluorescence images used in training deep learning prediction models using U-within-U-Net<br>
DOI: 10.5063/rj4gv9
title: Effects of experimental watering but not warming on herbivory vary across a gradient of precipitation: Dataset. 2019. California

description: Climate change can affect biotic interactions, and the impacts of climate on biotic interactionsmay vary across climate gradients. Climate affects biotic interactions through multiple drivers,although few studies have investigated multiple climate drivers in experiments. We examined theeffects of experimental watering, warming, and predator access on leaf water content and herbivoryrates of wooly bear caterpillars (Arctia virginalis) on a native perennial plant, pacific silverweed(Argentina anserina ssp. pacifica), at two sites across a gradient of precipitation in coastal California.Based on theory, we predicted that watering should increase herbivory at the drier end of the gradient,predation should decrease herbivory, and that watering and warming should have positive interactingeffects on herbivory. Consistent with our predictions, we found that watering only increased herbivoryunder drier conditions. However, watering increased leaf water content at both wetter and drier sites.Warming increased herbivory irrespective of local climate, and did not interact with watering.Predation did not affect herbivory rates. Given predictions that the study locales will become warmerand drier with climate change, our results suggest that the effects of future warming and drying onherbivory may counteract each other in drier regions of the range of Argentina anserina. Our findingssuggest a useful role for range-limit theory and the stress-gradient hypothesis in predicting climatechange effects on herbivory across stress gradients. Specifically, if climate change decreases stress,herbivory may increase, and vice versa for increasing stress. In addition, our work supports previoussuggestions that multiple climate drivers are likely to have dampening effects on biotic interactions dueto effects in different directions, though this is context-dependent.
DOI: 10.25416/ntr.13247111.v2
title: NTR - Curator and Critical Friend Affiliations

description: Who supports The National Teaching Repository? Click here to find out!<br>Click here to submit: figshare.edgehill.ac.uk/submit
DOI: 10.5281/zenodo.3932373
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Terrence Demos, https://orcid.org/0000-0003-0522-3708. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5066/p9ozwuip
title: Zooplankton Survey of the Northern Sacramento-San Joaquin Delta, California, 2016-2018

description: This data set contains information on zooplankton and associated environmental parameters for sampling conducted in California's northern Sacramento-San Joaquin Delta between May 2016 and April 2018. Macrozooplankton were sampled with horizontal tows (water surface) of a 50 cm-diameter conical plankton net that was 150cm long with 102um mesh. Samples were preserved in the field in 10 percent formalin for laboratory processing that was conducted by a contractor (EcoAnalysts, Inc).
DOI: 10.5281/zenodo.4396348
title: Database FEP

description: An open-source experimental database on flush end-plate connections.
DOI: 10.6084/m9.figshare.13497219.v1
title: Sampling techniques for rumen microbial analysis

description: The purpose of this study was to compare the microbial composition of samples retrieved by different techniques at different timepoints post-feeding and rumen fractions (whole, liquid, and solid) to identify an appropriate non-invasive sampling method to serve as a proxy for cannula-derived rumen samples for microbial analysis. <br>
DOI: 10.6084/m9.figshare.13355942.v1
title: Supplemental Table S4

description: Significant differences (p&lt;0.05; p-values listed in parentheses) in phage host range phenotypes between tested strains’ CCs based on Tukey HSD/one-way ANOVA tests.
DOI: 10.6084/m9.figshare.13355948
title: Supplemental Table S6

description: Functions enriched amongst gene sets analyzed with STRING databases. Sets of gene names corresponding to significant COGs, SNPs, and k-mers were created as described in the Materials and Methods section.
DOI: 10.6084/m9.figshare.13355951
title: Supplemental Table S7

description: Functions enriched amongst gene sets analyzed with PANTHER databases. Sets of gene names corresponding to significant COGs, SNPs, and k-mers were created as described in the Materials and Methods section. FDR means False Discovery Rate.
DOI: 10.6084/m9.figshare.13355939.v1
title: Supplemental Table S3

description: Primers used to amplify wild-type genes corresponding to transposon mutants and clone them into pOS1-P<i>lgt</i> with splicing overlap extension (SOE)-PCR or HiFi/Gibson assembly. The annealing portion is bolded. Tms were calculated for NEB Q5 HF polymerase (https://tmcalculator.neb.com/#!/batch). <i>fmtC</i> primers were used to amplify <i>fmtC</i> from USA300 and NRS209.
DOI: 10.6084/m9.figshare.13355942
title: Supplemental Table S4

description: Significant differences (p&lt;0.05; p-values listed in parentheses) in phage host range phenotypes between tested strains’ CCs based on Tukey HSD/one-way ANOVA tests.
DOI: 10.6084/m9.figshare.13355945.v1
title: Supplemental Table S5

description: Summary statistics for protein-protein interaction networks identified with STRING amongst genes corresponding to significant SNPs or k-mers (inside or adjacent to genes). PPI enrichment p-value corresponds to the likelihood nodes and edges would be selected from the <i>S. aureus</i> database by chance.
DOI: 10.6084/m9.figshare.13355933
title: Supplemental Table S2

description: Excel spreadsheet including tested<i> S. aureus</i> strain names, quantitative phenotypes, qualitative phenotypes (quantitative phenotypes from Supplemental Table S1 converted to qualitative by the OD<sub>600</sub> scale 0.1-0.4 for S - sensitive, 0.4-0.7 for SS - semi-sensitive, and 0.7 or more for R - resistant), BioProject, BioSample, and SRA accessions, sequence types (STs), clonal complexes (CCs), isolation dates, and isolation locations.
DOI: 10.6084/m9.figshare.13355939
title: Supplemental Table S3

description: Primers used to amplify wild-type genes corresponding to transposon mutants and clone them into pOS1-P<i>lgt</i> with splicing overlap extension (SOE)-PCR or HiFi/Gibson assembly. The annealing portion is bolded. Tms were calculated for NEB Q5 HF polymerase (https://tmcalculator.neb.com/#!/batch). <i>fmtC</i> primers were used to amplify <i>fmtC</i> from USA300 and NRS209.
DOI: 10.6084/m9.figshare.13355945
title: Supplemental Table S5

description: Summary statistics for protein-protein interaction networks identified with STRING amongst genes corresponding to significant SNPs or k-mers (inside or adjacent to genes). PPI enrichment p-value corresponds to the likelihood nodes and edges would be selected from the <i>S. aureus</i> database by chance.
DOI: 10.6084/m9.figshare.13355909
title: Supplemental Table S1

description: To determine diversity of the phages used in this study, we calculated average nucleotide identities (ANIs) with fastANI 1.31. The phages were sequenced with Oxford Nanopore or Oxford Nanopore and Illumina technologies. p0017 and pyo genomes were assembled from nanopore reads with canu 2.0 while p0045, p0017S, p002y, p003p, p0040, and p0006 genomes were assembled from Illumina and nanopore reads with Unicycler 0.4.8.
DOI: 10.15468/qx2ymp
title: Morphological ontogeny of Oribatella hungarica (Acari: Oribatida: Oribatellidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Seniczak, Stanis?aw, Ivan, Otilia, Marquardt, Tomasz, Seniczak, Anna (2020): Morphological ontogeny of Oribatella hungarica (Acari: Oribatida: Oribatellidae). Zootaxa 4857 (1): 137-159, DOI: https://doi.org/10.11646/zootaxa.4857.1.8
DOI: 10.3886/e116269v1-73080
title: Replication data for: Shocks and Frictions in US Business Cycles: A Bayesian DSGE Approach

description: Using a Bayesian likelihood approach, we estimate a dynamic stochastic general equilibrium model for the US economy using seven macroeconomic time series. The model incorporates many types of real and nominal frictions and seven types of structural shocks. We show that this model is able to compete with Bayesian Vector Autoregression models in out-of-sample prediction. We investigate the relative empirical importance of the various frictions. Finally, using the estimated model, we address a number of key issues in business cycle analysis: What are the sources of business cycle fluctuations? Can the model explain the cross correlation between output and inflation? What are the effects of productivity on hours worked? What are the sources of the "Great Moderation"? (JEL D58, E23, E31, E32)
DOI: 10.3886/e114507v1-73100
title: Replication data for: An Economist's Perspective on the Bitcoin Payment System

description: The paper's introduction offers a high-level review of Bitcoin's features, especially its governance by protocol. The paper proceeds to summarize Bitcoin's analysis as a payment system. It pays particular attention to a comparison between Bitcoin and a firm-run payment system.
DOI: 10.15468/7u5nbq
title: Redescription of Cerebratulus marginatus auct. (Nemertea: Pilidiophora) from Hokkaido, Japan, as a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kajihara, Hiroshi (2020): Redescription of Cerebratulus marginatus auct. (Nemertea: Pilidiophora) from Hokkaido, Japan, as a new species. Zootaxa 4819 (2): 295-315, DOI: https://doi.org/10.11646/zootaxa.4819.2.4
DOI: 10.5519/qd.p3wm25yd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15468/ynnzue
title: Description of the immature stages of the endangered Japanese endemic Oreodytes kanoi (Kamiya, 1938) (Coleoptera: Dytiscidae: Hydroporinae) and comparison with the known larvae of Oreodytes Seidlitz, 1887

description: This dataset contains the digitized treatments in Plazi based on the original journal article Okada, Ryohei, Alarie, Yves (2020): Description of the immature stages of the endangered Japanese endemic Oreodytes kanoi (Kamiya, 1938) (Coleoptera: Dytiscidae: Hydroporinae) and comparison with the known larvae of Oreodytes Seidlitz, 1887. Zootaxa 4820 (1): 1-18, DOI: https://doi.org/10.11646/zootaxa.4820.1.1
DOI: 10.15468/4xbut4
title: A new bathyal ophiacanthid brittle star (Ophiuroidea: Ophiacanthidae) with Caribbean affinities from the Plio-Pleistocene of the Mediterranean

description: This dataset contains the digitized treatments in Plazi based on the original journal article Numberger-Thuy, Lea D., Thuy, Ben (2020): A new bathyal ophiacanthid brittle star (Ophiuroidea: Ophiacanthidae) with Caribbean affinities from the Plio-Pleistocene of the Mediterranean. Zootaxa 4820 (1): 19-30, DOI: https://doi.org/10.11646/zootaxa.4820.1.2
DOI: 10.17632/cr9yttnhg2.1
title: Data for: Quantitative constraints on the carbon cycling and temporal changes of episodic euxinia during the end-Permian mass extinction in South China

description: Geochemical data of the study section
DOI: 10.17632/x9bn2dv5jz.1
title: Data for: Comparative studies of two Lower Cambrian sedimentary rock profiles from the northern Tarim Basin, NW China: Implications for their biomass development and organic matter accumulation

description: All the data concerning the manuscript work.
DOI: 10.17632/ysg9vk6dp8.1
title: Data for: Hygroscopic Property of Inorganic Salts in Atmospheric Aerosols Measured by Physisorption Analyzer

description: The water-to-salt molar ratio curves of NaNO3, NaClO4, MgSO4, K3PO4, K2HPO4, and KH2PO4 particles are provided. Reproducible experiments data of WSR curves of NaNO3 particles are provided. The analyze data using BET theory of NaNO3, NaClO4, MgSO4, K3PO4, K2HPO4, and KH2PO4 particles are provided.
DOI: 10.15468/yp4kpy
title: Redescription of larva of the South African endemic dobsonfly genus Chloroniella Esben-Petersen, 1924 (Megaloptera, Corydalidae), with a proposed terminology for Corydalidae larval sclerites

description: This dataset contains the digitized treatments in Plazi based on the original journal article Martins, Caleb Califre, Contreras-Ramos, Atilano (2020): Redescription of larva of the South African endemic dobsonfly genus Chloroniella Esben-Petersen, 1924 (Megaloptera, Corydalidae), with a proposed terminology for Corydalidae larval sclerites. Zootaxa 4820 (1): 134-146, DOI: https://doi.org/10.11646/zootaxa.4820.1.6
DOI: 10.15468/nufjb6
title: A new Symphoromyia in the Middle Eocene Baltic amber (Diptera: Rhagionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ngo-Muller, Valerie, Nel, Andre (2020): A new Symphoromyia in the Middle Eocene Baltic amber (Diptera: Rhagionidae). Zootaxa 4820 (2): 373-378, DOI: https://doi.org/10.11646/zootaxa.4820.2.10
DOI: 10.6084/m9.figshare.13497873.v1
title: 数据可用性.docx

description: 纳米甲壳素晶须是一组可再生材料，引起了广泛的兴趣。作为表面施胶剂，他们的表演 已经主要集中在阻隔性能，因为它们被认为是最有潜力的塑料替代品。但是，同样重要的是，探索其改善打印质量的潜力。在本文中，我们将不同剂量的纳米甲壳素晶须（NWs）添加到木薯淀粉（CS）中，以研究它们在表面施胶 和印刷过程中的影响。通过添加NW，改善了复合浆料的流变行为和成膜能力。用CS-6重量％纳米线薄膜施胶重量为2.5g / m <sup>2</sup>可以完全覆盖原纸的孔。与具有相同装载重量的CS尺寸纸张相比，接触角和印刷表面强度分别增加了60.0％ 和78.6％。 另外，CS-6重量％的NWs尺寸的纸张在表面上的打印斑点比CS尺寸的纸张少。
DOI: 10.6084/m9.figshare.13497873
title: 数据可用性.docx

description: 纳米甲壳素晶须是一组可再生材料，引起了广泛的兴趣。作为表面施胶剂，他们的表演 已经主要集中在阻隔性能，因为它们被认为是最有潜力的塑料替代品。但是，同样重要的是，探索其改善打印质量的潜力。在本文中，我们将不同剂量的纳米甲壳素晶须（NWs）添加到木薯淀粉（CS）中，以研究它们在表面施胶 和印刷过程中的影响。通过添加NW，改善了复合浆料的流变行为和成膜能力。用CS-6重量％纳米线薄膜施胶重量为2.5g / m <sup>2</sup>可以完全覆盖原纸的孔。与具有相同装载重量的CS尺寸纸张相比，接触角和印刷表面强度分别增加了60.0％ 和78.6％。 另外，CS-6重量％的NWs尺寸的纸张在表面上的打印斑点比CS尺寸的纸张少。
DOI: 10.5281/zenodo.4393041
title: Zeros in scRNA-seq data: good or bad? How to embrace or tackle zeros in scRNA-seq data analysis?

description: This includes the generation of all the figures in the paper "Zeros in scRNA-seq data: good or bad? How to embrace ortackle zeros in scRNA-seq data analysis?"
DOI: 10.15468/e4vqfk
title: A new species of Blattisocius from Egypt (Acari, Blattisociidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hassan, Mourad Fahmy, Ali, Fatma Samir, Nasr, Mahmoud Korashy (2020): A new species of Blattisocius from Egypt (Acari, Blattisociidae). Zootaxa 4820 (2): 391-397, DOI: https://doi.org/10.11646/zootaxa.4820.2.13
DOI: 10.15468/qy767d
title: The nomenclature of the blond capuchin, Cebus flavius (Schreber, 1799) (Mammalia, Primates, Cebidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zijlstra, Jelle S. (2020): The nomenclature of the blond capuchin, Cebus flavius (Schreber, 1799) (Mammalia, Primates, Cebidae). Zootaxa 4820 (2): 398-400, DOI: https://doi.org/10.11646/zootaxa.4820.2.14
DOI: 10.6084/m9.figshare.12838187.v1
title: Supporting data from: 'Adaptation to vector-based transmission in a honey bee virus'

description: Raw data includes qPCR results, calculated absolute and relative viral loads per bee, and colony data. R scripts used to conduct the analysis and generate figures have been included along with accompanying csv data files.
DOI: 10.15468/nn5f6u
title: Two new species of Anastrepha (Diptera: Tephritidae) from Ecuador

description: This dataset contains the digitized treatments in Plazi based on the original journal article Troya, Henry, Norrbom, Allen L., Bolanos Pineda, Julia E. (2020): Two new species of Anastrepha (Diptera: Tephritidae) from Ecuador. Zootaxa 4820 (2): 366-372, DOI: https://doi.org/10.11646/zootaxa.4820.2.9
DOI: 10.21227/ypaj-zt78
title: Fluorescence Microscopy Images from CBMI

description: Intracellular organelle networks such as the endoplasmic reticulum (ER) network and the mitochondrial network serve crucial physiological functions. Morphology of these networks plays critical roles in mediating their functions.Accurate image segmentation is required for analyzing morphology of these networks for applications such as disease diagnosis and drug discovery. Deep learning models have shown remarkable advantages in accurate and robust segmentation of these complex network structures. To support the training and testing of deep learning segmentation models, we construct two fluorescence image datasets, ER and MITO, for the ER network and the mitochondrial network, respectively. We provide manual segmentation for these organelle networks in binary masks. The datasets have been used to evaluate and compare performance of the methods proposed in our article “Heuristic Optimization of Deep Learning Models for Segmentation of Intracellular Organelle Networks”.
DOI: 10.5439/1179820
title: ndropmfrsr

description: ARM Instrument: Droplet number concentration using MFRSR data in NDROP VAP.
DOI: 10.15468/ghp8z7
title: Strianassa lerayi gen. et sp. nov., a new laomediid mud-shrimp from the eastern Pacific, with new records of Axianassa ngochoae Anker, 2010 and Heteroaxianassa heardi (Anker, 2011) in the western Pacific (Malacostraca: Decapoda: Gebiidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Anker, Arthur (2020): Strianassa lerayi gen. et sp. nov., a new laomediid mud-shrimp from the eastern Pacific, with new records of Axianassa ngochoae Anker, 2010 and Heteroaxianassa heardi (Anker, 2011) in the western Pacific (Malacostraca: Decapoda: Gebiidea). Zootaxa 4820 (3): 523-539, DOI: https://doi.org/10.11646/zootaxa.4820.3.6
DOI: 10.6084/m9.figshare.13496997
title: The Impact of Surface Composition on the Interfacial Energetics and Photoelectrochemical Properties of BiVO4

description: The ability to engineer the photoelectrode surface is pivotal for optimizing the properties of any photoelectrode used for solar fuel production. Altering crystal facets exposed on the surface of photoelectrodes has been a major strategy to modify their surface structure. However, there exist numerous ways to terminate the surface even for the same facet, which can considerably alter the photoelectrode properties. Here, we report tightly integrated experimental and computational investigations of epitaxial BiVO4 photoelectrodes with V-rich and Bi-rich (010) facets. Our study demonstrates that even for the same facet the surface Bi:V ratio has a remarkable impact on the interfacial energetics and photoelectrochemical properties. We also elucidate the microscopic origins of how the surface composition can affect the photoelectrochemical properties. This study opens an unexplored path for understanding and engineering surface energetics via tuning the surface termination/composition of multinary oxide photoelectrodes.<br>(To access dataset, use the link above or visit https://qresp.org/ on the University of Chicago node)<br>
DOI: 10.6084/m9.figshare.13487256.v3
title: data and code

description: data and code
DOI: 10.5281/zenodo.4397664
title: Drop vertical jump biomechanics following exercise induced muscle damage

description: Drop vertical jump biomechanical data 0h and 48h following eccentric exercise induced muscle damage of the knee extensors.
DOI: 10.5281/zenodo.4397663
title: Drop vertical jump biomechanics following exercise induced muscle damage

description: Drop vertical jump biomechanical data 0h and 48h following eccentric exercise induced muscle damage of the knee extensors.
DOI: 10.17608/k6.auckland.12996992
title: How far might plant-eating dinosaurs have moved seeds? Raw data

description: Data analysed in Perry 2020 published in Biology Letters<br>
DOI: 10.17608/k6.auckland.12996992.v2
title: How far might plant-eating dinosaurs have moved seeds? Raw data

description: Data analysed in Perry 2020 published in Biology Letters<br>
DOI: 10.17608/k6.auckland.12996992.v1
title: Seed dispersal by plant-eating dinosaurs raw data

description: Data analysed in Perry 2020 published in Biology Letters<br>
DOI: 10.5281/zenodo.4397768
title: Previously failing iView images

description: Out of sync iview images
DOI: 10.5281/zenodo.4381229
title: Previously failing iView images

description: Out of sync iview images
DOI: 10.15468/gt5dsz
title: Two new species of the genus Broscosoma Rosenhauer, 1846 (Coleoptera Carabidae, Broscinae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jiang, Ri-Xin, Feng, Qi, Wang, Shuo (2020): Two new species of the genus Broscosoma Rosenhauer, 1846 (Coleoptera Carabidae, Broscinae) from China. Zootaxa 4821 (1): 173-180, DOI: https://doi.org/10.11646/zootaxa.4821.1.10
DOI: 10.6084/m9.figshare.13487256.v4
title: data and code

description: data and code
DOI: 10.17632/bvrdgykzwy.1
title: PyGAOWT codes for: Proposal of a Novel GPU-accelerated Lifetime Optimization Method for Onshore Wind Turbine Dampers under Real Wind Distribution

description: PyGAOWT codes for: Proposal of a Novel GPU-accelerated Lifetime Optimization Method for Onshore Wind Turbine Dampers under Real Wind Distribution