cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15097419.v1
title: Protist.guru: gene expression, co-expression network and comparative transcriptomics database for protists

description: During the last few decades, the study of microbial ecology has been enabled by molecular and genomic data. DNA sequencing has revealed the surprising extent of microbial diversity and how microbial processes run global ecosystems. However, major gaps in our understanding of the microbial world remain, and one example is that microbial eukaryotes, or protists, are still neglected. To address this gap, we used gene expression data from 15 distinct protist species to create protist.guru - an online database equipped with tools for identifying functional co-expression networks, gene families, and enriched gene clusters. Here, we show how our database can be used to reveal genes involved in important pathways such as the synthesis of secondary carotenoids in Haematococcus lacustris. We expect protist.guru to serve as a valuable resource for protistologists, as well as a catalyst for discoveries and new insights into the biological processes of microbial eukaryotes. <br>
DOI: 10.6084/m9.figshare.28539320.v1
title: Supplementary data for DRAG2 project

description: Supplementary data for DRAG2 project
DOI: 10.6084/m9.figshare.3759129.v1
title: modzs.gctx: a legacy LINCS L1000 dataset of differential expression signatures

description: modzs.gctx contains a probe (rows) × signature (columns) matrix of differential expression z-scores from the LINCS L1000 project. The file uses a compressed binary encoding that can be read using the `cmap/l1ktools` drivers.<br>modzs.gctx is an input for the dhimmel/lincs repository, but is too large to be uploaded to GitHub. dhimmel/lincs extracts signatures from modzs.gctx to compute consensus signatures for perturbagens. Consensus signatures from dhimmel/lincs are available at https://doi.org/bp22 as user-friendly TSV files. modzs.gctx is uploaded for reproducibility of dhimmel/lincs and longterm preservation. Users who need raw LINCS L1000 data are encouraged to use the Broad Production Data hosted on GEO rather than the legacy modzs.gctx file.<br>I (Daniel Himmelstein) originally retrieved modzs.gctx from the following path on the L1000 C3 Cloud (c3.lincscloud.org): /xchip/cogs/data/build/a2y13q1/modzs.gctx. However, the original hosting is no longer operating. Therefore, I am uploading this file to figshare.<br>I am choosing a CC BY license with the requirement to attribute the LINCS L1000 Team at the Broad Institute. However, users should note that the licensing of modzs.gctx is murky. The Broad license (https://git.io/vieCF) states that data files cannot be redistributed, which conflicts the NIH LINCS Data Release Policy. See https://doi.org/bfmn for more information.
DOI: 10.17632/zpxs87bjt8
title: Multivariate time series data of milling processes with varying tool wear and machine tools

description: The presented dataset provides labeled, multivariate time series data of milling processes with varying tool wear and for varying machine tools. The width of the flank wear land VB of peripheral cutting edges is used as a degradation metric. A total of nine end milling cutters were worn from an unused state to end of life (VB ≈ 150 μm) in 3-axis shoulder milling of cast iron 600-3/S. The width of the flank wear land VB was frequently measured with a digital microscope at a magnification of 100x. The tools were of the same model (solid carbide end milling cutter, 4 edges, coated with TiN-TiAlN) but from different batches. Experiments were conducted on three different 5-axis milling centers of a similar size. Workpieces, experimental setups, and process parameters were identical on all of the machine tools. The process forces were recorded with a dynamometer with a sample rate of 25 kHz. The force or torque of the spindle and feed drives, as well as the position control deviation of feed drives, were recorded from the machine tool controls with a sample rate of 500 Hz. The dataset holds a total of 6,418 files labeled with the wear (VB), machine tool (M), tool (T), run (R), and cumulated tool contact time (C). The file “filelist.csv” provides an overview of all the sample files and their corresponding labels. This data could be used to identify signal features that are sensitive to tool wear, to investigate methods for tool wear estimation and tool life prediction, or to examine transfer learning strategies.
DOI: 10.6084/m9.figshare.12416906.v2
title: Helio4Cast SIRCAT 1.0 for solar wind stream interaction regions and high speed streams (Wind, STEREO, MAVEN)

description: https://helioforecast.space/sircat
DOI: 10.6084/m9.figshare.12546686.v2
title: Peritoneal_Splenic Macrophages_data

description: Peritoneal and splenic red pulp macrophages displayed major differences in cell surface phenotype reflecting their adaptation to different tissue microenvironments and tissue-specific functions.
DOI: 10.17632/2c3n6rmk3t
title: Data for: Direct numerical simulations of Rayleigh-Bénard convection of a gas-liquid medium near its density maximum

description: This file is the original data including the critical conditions, flow patterns,  time dependencies of the temperature , fundamental frequency, number of rotating rolls,  average Nusselt number  and so on.
DOI: 10.17632/6fvyvmn9gm
title: openPSTD: The open source pseudospectral time-domain method for acoustic propagation

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract An open source implementation of the Fourier pseudospectral time-domain (PSTD) method for computing the propagation of sound is presented, which is geared towards applications in the built environment. Being a wave-based method, PSTD captures phenomena like diffraction, but maintains efficiency in processing time and memory usage as it allows to spatially sample close to the Nyquist criterion, thus keeping both the required spatial and temporal resolution coarse. In the implementation it has ... Title of program: openPSTD v1.1 Catalogue Id: AFAA_v1_0 Nature of problem Sound propagation Versions of this program held in the CPC repository in Mendeley Data AFAA_v1_0; openPSTD v1.1; 10.1016/j.cpc.2016.02.029
DOI: 10.17632/nfkzncjxsh
title: Wheat crop responds to climate change in rainfed areas of District Mansehra, Khyber-Pakhtunkhwa- An Econometric analysis

description: Agriculture in many ways is affected by climate change and has impact for productivity of crops particularly in rainfed areas. Climate change related research remained a poorly investigated area in KP and instant study filled that gap by investigating impacts of change in climate on farm productivity. The secondary data, spread over 30 years from 1984 to 2013 pertaining to temperature, precipitation, area under cultivation and yield of crops was collected. Analytical models used are ARDL Model. The results pertaining to impact of temperature and precipitation on wheat yield suggest long run relationship among the variables. Temperature is positively and significantly related in Mansehra. The precipitation is positively and significantly related. Short run relationship implies that around 100% deviations from long-term equilibrium are adjusted every year in case of Mansehra. The results wheat areas suggest long run relationship among the variables based on F Statistics value. Both temperature and precipitation are positively and significantly related to the area under wheat in the long run in case of Mansehra. Based on objectives of the research study and field findings recommendations offered include; farmers awareness drive, policies to promote adaptation measures, enhancing farmers’ adaptive capacity to strengthen local resilience, participation of farming community in formulation of policies, making meteorological information available to farmers, Design research plans to evolve crops varieties addressing changing climatic challenges, construct water harvesting structures for high efficiency irrigation and further research to estimate range of temperature and precipitation within which crops under study perform better.
DOI: 10.6084/m9.figshare.16922851.v1
title: Supplementary Material for: Impaired Sensorimotor Adaption in Schizophrenia in Comparison to Age-Matched and Elderly Controls

description: <b><i>Background:</i></b> The “cognitive dysmetria hypothesis” of schizophrenia proposes a disrupted communication between the cerebellum and cerebral cortex, resulting in sensorimotor and cognitive symptoms. Sensorimotor adaptation relies strongly on the function of the cerebellum. <b><i>Objectives:</i></b> This study investigated whether sensorimotor adaptation is reduced in schizophrenia compared with age-matched and elderly healthy controls. <b><i>Methods:</i></b> Twenty-nine stably treated patients with schizophrenia, 30 age-matched, and 30 elderly controls were tested in three motor adaptation tasks in which visual movement feedback was unexpectedly altered. In the “rotation adaptation task” the perturbation consisted of a rotation (30° clockwise), in the “gain adaptation task” the extent of the movement feedback was reduced (by a factor of 0.7) and in the “vertical reversal task,” up- and downward pen movements were reversed by 180°. <b><i>Results:</i></b> Patients with schizophrenia adapted to the perturbations, but their movement times and errors were substantially larger than controls. Unexpectedly, the magnitude of adaptation was significantly smaller in schizophrenia than elderly participants. The impairment already occurred during the first adaptation trials, pointing to a decline in explicit strategy use. Additionally, post-adaptation aftereffects provided strong evidence for impaired implicit adaptation learning. Both negative and positive schizophrenia symptom severities were correlated with indices of the amount of adaptation and its aftereffects. <b><i>Conclusions:</i></b> Both explicit and implicit components of sensorimotor adaptation learning were reduced in patients with schizophrenia, adding to the evidence for a role of the cerebellum in the pathophysiology of schizophrenia. Elderly individuals outperformed schizophrenia patients in the adaptation learning tasks.
DOI: 10.6084/m9.figshare.28098674.v3
title: <i>Global land system maps at 1 km resolution </i><i>for</i> <i>1.5 °C </i><i>climate</i>

description: land system maps
DOI: 10.6084/m9.figshare.4269587.v2
title: Genome-Bin_FASTA-Files_NCBI-trimmed.zip

description: FASTA files containing the contigs of all 98 genomes from metagenomes (GFMs). Putative contaminating sequence motifs identified during the NCBI GenBank submission process have been trimmed.
DOI: 10.17632/9dpmkgpncw
title: Motor pure sound signal and real industrial environment noise sound signal samples

description: The dataset contains three types of motor acoustic signal samples under different interference conditions: 1. Pure motor acoustic signal samples; 2. Acoustic samples of motors affected by noise interference from factory production lines; 3. Acoustic samples of motors affected by factory laboratory noise interference. There are four different conditions for the motor: 1. Healthy motor; 2. Magnet fracture motor; 3. Excessive Hall adhesive on the stator of the motor; 4. The bearing is too tight for the motor. Each motor collects acoustic signal samples from three different directions: left, front, and right.The collection device is divided into PCB acoustic condenser microphone and smartphone.
DOI: 10.17632/nfxtkdmp9p
title: Datos estudiantes universitarios en República Dominicana, su acceso al mercado de trabajo y sus niveles de ingreso

description: Este Dataset contiene datos estadísticos suministrados por el Banco Central de la República Dominicana y la Oficina Nacional de Estadística sobre estudiantes de educación superior de la República Dominicana, su acceso al mercado de trabajo y sus niveles de ingreso, para ser utilizados en la investigación sobre la Educación Financiera de Estudiantes Universitarios en República Dominicana.
DOI: 10.6084/m9.figshare.3453023.v1
title: Oxygen isotope variability in conodonts: implications for reconstructing Palaeozoic palaeoclimates and palaeoceanography

description: Conodonts have the potential to elucidate the intricacies of Palaeozoic climates, especially if δ<sup>18</sup>O values of single apatitic tooth-like ‘elements’ can be used to map evolving sea surface temperatures and differentiate oceanic water masses. Their ecological distribution as pelagic and nektobenthic organisms, high-resolution biostratigraphy, and abundance in Cambrian–Triassic rocks qualifies them as potentially robust climate archives. Previous ion microprobe conodont δ<sup>18</sup>O studies have proceeded directly to palaeotemperature interpretation without appreciation of inter- and intra-element variability or post-mortem artefacts. Here, ion microprobe analyses of Ordovician and Silurian conodonts establishes that: intra-element crown tissue δ<sup>18</sup>O typically varies by ≤1‰ (53% of conodonts analysed), is normally ≤2‰ (92% of analyses), and rarely varies by 2–4‰; δ<sup>18</sup>O can vary across elements, suggesting a microstructural and/or diagenetic control; δ<sup>18</sup>O can vary between species representatives by <em>c</em>. 3‰; δ<sup>18</sup>O of pelagic and nektobenthic taxa can be offset by 2–3‰; elements processed with formic acid have highly variable δ<sup>18</sup>O; and thermal alteration does affect δ<sup>18</sup>O. Conodont ion microprobe δ<sup>18</sup>O values are comparable with those of bulk methods, but utilization of material with no consideration of geological context or processing history may introduce significant artefacts. A protocol for future conodont oxygen isotope ion microprobe studies is proposed.
DOI: 10.6084/m9.figshare.978918.v4
title: Code Supplement for the article: Exploring the spatially explicit predictions of the Maximum Entropy Theory of Ecology

description: This file contains all the code needed to replicate the analyses of McGlinn, D.J., X. Xiao, J. Kitizes, and E.P. White. submitted. Exploring the spatially explicit predictions of the Maximum Entropy Theory of Ecology. http://biorxiv.org/content/early/2014/03/30/003657 This file should be decompressed in what R recognizes as the home directory (the R code will need to be modified if you decide not to use your home directory). R v 2.12 or higher and python 2.6 are needed to run the code. The following python packages are required: matplotlib, mpmath, numpy, and scipy, and the following R packages are required: vegan, hash, RCurl and bigmemory. It is also possible to access this code via GitHub at the following addresses: The primary code repository is located at: https://github.com/weecology/mete-spatial Additional scripts needed to run the core METE DDR functions are located here: https://github.com/weecology/METE https://github.com/weecology/macroecotools After the files are downloaded (from GitHub) or decompressed (from the mete-spatial.zip file) navigate to the METE directory and run the following python command python setup.py install run the same command in the macroecotools directory. To download the publically available data and run the analysis navigate to the directory ~/mete-spatial and run the command: Rscript ddr_run_all.R This script will download two datasets, analyze them, and graph the results. The plots will appear in the directory ~/mete-spatial/figs/
DOI: 10.17632/5hzs8w46jh
title: Buddhist datasets

description: This dataset is released as the public data source of the manuscript entitled "A Novel Masking Model for Buddhist Literature Understanding by Using Generative Adversarial Networks". The subfiles contains that:
The Buddhist pretraining source documents:
--pretrainDataset.zip

The Buddhist functional word dictionary:
--function_words.txt

The Buddhist terminology dictionary:
--buddhist_words.txt

The Zen Text Segmentation (ZTS) dataset:
--ZTSdataset.zip
 --Train set: segDataTrain.npy
 --Validation set: segDataVal.npy
 --Test set: segDataTest.npy

The Zen Sentiment Classification (ZSC) dataset:
--ZSCdataset.zip
 --Train set: ZSCTrain.npy
 --Validation set: ZSCVal.npy
 --Test set: ZSCTest.npy
DOI: 10.6084/m9.figshare.13625279.v1
title: NGD genes with complete ORFs pep&gt;=30aa

description: Lotus genes with Complete ORFs (&gt;=30aa)<br>
DOI: 10.6084/m9.figshare.5123944.v1
title: Supplementary Material for: Cross-Sectional Association between Polyfluoroalkyl Chemicals and Cognitive Limitation in the National Health and Nutrition Examination Survey

description: <b><i>Background/Aims:</i></b> Our limited understanding of how polyfluoroalkyl chemicals (PFCs) may impact on human health suggests the potential for a protective impact on brain health. This study was designed to explore the association between PFCs and cognitive ability in older adults. <b><i>Methods:</i></b> We assessed the association between four PFCs, perfluorooctanoic acid (PFOA), perfluorooctane sulfonic acid (PFOS), perfluorononanoic acid (PFNA) and perfluorohexane sulfonic acid (PFHxS), and self-reported limitation due to difficulty remembering or periods of confusion using data from participants aged 60–85 years from the 1999–2000 and 2003–2008 National Health and Nutrition Examination Surveys. We also considered whether diabetic status or diabetic medication use modifies this association in light of in vitro evidence that PFCs may act on the same receptors as some diabetic medications. <b><i>Results:</i></b> In multivariable adjusted models, point estimates suggest a protective association between PFCs and self-reported cognitive limitation (odds ratio, OR; 95% confidence interval, CI) for a doubling in PFC concentration: PFOS (OR, 0.90; 95% CI, 0.78, 1.03), PFOA (OR, 0.92; 95% CI, 0.78, 1.09), PFNA (OR, 0.91; 95% CI, 0.79, 1.04) and PFHxS (OR, 0.93; 95% CI, 0.82, 1.06). The protective association was concentrated in diabetics, with strong, significant protective associations in nonmedicated diabetics. <b><i>Conclusions:</i></b> This cross-sectional study suggests that there may be a protective association between exposure to PFCs and cognition in older adults, particularly diabetics.
DOI: 10.17632/8tzhnhc294
title: Supplemental Files for JAAD Research Letter - Quality of Patient-Reported Outcome Measures for grading Acne Scars and Dark Marks

description: Supplementary figures: 1
Supplementary tables: 4
Attachments: Appendix - Search Strategy

Keywords: acne, acne scars, dark marks, post-inflammatory hyperpigmentation, patient-reported outcome measures, grading, COSMIN review
DOI: 10.6084/m9.figshare.11316728.v1
title: MECP2 EVS genetic variant data in CSV

description: MECP2 genetic variant data from EVS in CSV format.<br>FAIR machine-readable metadata is available at:http://purl.org/biosemantics-lumc/rettbase/fdp<br>
DOI: 10.6084/m9.figshare.25398604.v1
title: Data Immigration-Wage Link

description: Data used for assessing the effect of immigration on wages. Case report: Spanish provinces
DOI: 10.6084/m9.figshare.28955696.v4
title: Winther-Have_Supplementary_Information.xlsx

description: Supplementary material and high resolution pictures for Winther-Have et al. 2025
DOI: 10.6084/m9.figshare.13636448.v1
title: Supplementary Material for: Lung Sestamibi Uptake on Myocardial Perfusion Imaging and Outcomes in Chronic Kidney Disease

description: <b><i>Background and Objectives:</i></b> In patients with CKD and end-stage kidney disease (ESKD), cardiac stress testing has low sensitivity and specificity for coronary disease. Alternate markers that are derived during the stress testing may enhance the predictive characteristic of stress testing. The objective was to examine the predictive characteristic of lung-to-heart ratio (LHR) in patients with CKD and ESKD. <b><i>Design, Setting, Participants, and Measurements:</i></b> Retrospective parallel cohort of ESKD and CKD not on dialysis (CKD-ND) who underwent stress testing with nuclear myocardial perfusion imaging utilizing sestamibi tracer and regadenoson. Stress LHR was calculated by the processing software and reported. Patients were analyzed by tertile of LHR (≤0.28, 0.29–0.32, ≥0.33). The primary outcome was a composite of all-cause mortality, hospitalization for myocardial infarction or unstable angina, or revascularization. <b><i>Results:</i></b> There were 144 CKD-ND and 145 ESKD patients. Patients with ESKD had greater comorbidity burden than CKD-ND. Stress tests were more often performed for pre-operative risk assessment among ESKD versus CKD-ND (53.8 vs. 5.6%, <i>p</i> &lt; 0.001). ESKD patients more likely had ischemia identified on stress testing (19.3 vs. 8.3%, <i>p</i> = 0.001). Mean LHR was 0.31 (Standard deviation – SD: 0.09) and was similar across CKD-ND stages and ESKD. Primary outcome in the lowest (23%) and highest (33.3%) LHR tertile was higher than the middle tertile (12.8%); <i>p</i> = 0.005. This finding was similar between CKD-ND and ESKD and persisted in multivariable analysis. <b><i>Conclusions:</i></b> LHR ≤0.28 and ≥0.33 are independently associated with higher risk for death in patients with CKD-ND and ESKD. Future studies are warranted to understand the association of extreme LHR values and outcomes in this high-risk population.
DOI: 10.6084/m9.figshare.28737170.v1
title: A large dataset of bone marrow cells in myelodysplastic syndrome for classification systems

description: A large dataset of bone marrow cells in myelodysplastic syndrome is presented in a zip file. The root directory contains 2 folders. In each folder, images are grouped by cell classification. Image names are formatted with cell classification and an index. And each folder contains a .csv file listing image paths and corresponding information.
DOI: 10.6084/m9.figshare.5755434.v1
title: Cognitive distortions and gambling near-misses in Internet Gaming Disorder: A preliminary study

description: The raw data from the slot machine task
DOI: 10.6084/m9.figshare.8156597.v3
title: Great Basin National Park (GRBA) | Park and Neighborhood Characteristics

description: This repository contains park and neighborhood data on Great Basin National Park (GRBA) in support of the NSF-funded project on Sustainability and Safety in the Pacific West Region National Parks.Internal park data include trail and roads within park boundary as well as yearly data on visitation and staffing for 2003-2013.Neighborhood data include census demographics, county crime, roads, parcel ownership, and land cover.Details provided in NPS PWR Crime Metadata.pdf.<br>