cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc28910n
title: CCDC 2094050: Experimental Crystal Structure Determination

description: Related Article: Zi-Yi Chen, Qi Liu, Yue Cheng, Yi-Fei Deng, Shihao Liu, Xin-Yi Wang, Yuan-Zhu Zhang|2023|Angew.Chem.,Int.Ed.|62|e202301124|doi:10.1002/anie.202301124
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.kxn9sv
title: Occurrence Download

description: A dataset containing 600 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ips grandicollis Wood & Bright, 1992",
 "Year 2000-2024"
 ]
}

 The dataset includes 600 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039136-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2cnrzs
title: CCDC 2194706: Experimental Crystal Structure Determination

description: Related Article: Koichiro Nishimoto, Naoki Noto, Yohei Kametani, Bendik Gro̷mer, Chihaya Murata, Hiroko Okuwa, Yoshihito Shiota, Kazunari Yoshizawa, Susumu Saito|2024|Organometallics|43|3013|doi:10.1021/acs.organomet.4c00355
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.c.3611780_d15.v1
title: Additional file 6: Table S3. of The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1

description: Summary of the functional annotation clustering analysis in each pairwise comparison. (XLSX 149 kb)
DOI: 10.15468/dl.3b6cq2
title: Occurrence Download

description: A dataset containing 10111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Morchella esculenta (L.) Pers.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 10111 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039137-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3611813_d1.v1
title: Additional file 2: of Analyzing negative feedback using a synthetic gene network expressed in the Drosophila melanogaster embryo

description: lacZ expression data. Experimental data of normalized lacZ expression with different levels of Gal4 and Gal80. (XLS 102Â kb)
DOI: 10.6084/m9.figshare.c.3611837_d1.v1
title: Additional file 1: of Evidence for the presence of African swine fever virus in an endemic region of Western Kenya in the absence of any reported outbreak

description: Results of conventional and real-time PCR. Contains sample ID and sampling location with the results from the conventional PCR assay and the real-time PCR assays using the TaqManÂŽ EZ-RT-PCR Kit and the Life Technologies Path-ID Multiplex One Step Kit. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3611849_d2.v1
title: MOESM5 of Conversion of nanoscale topographical information of cluster-assembled zirconia surfaces into mechanotransductive events promotes neuronal differentiation

description: Additional file 5: Table S2. Proteomic data for downregulated proteins. Proteins downregulated in cells on ns-Zr15 or were present only in cells on flat-Zr. Adhesome proteins and proteins with roles in mechanobiological processes are marked in dark and light grey, respectively.
DOI: 10.15468/dl.9jvbza
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brevoortia smithi Hildebrand, 1941",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 44 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039138-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3620213_d1.v1
title: Additional file 9: Table S5. of The Trichoderma atroviride putative transcription factor Blu7 controls light responsiveness and tolerance

description: List of putative light responsive transcription factors. All putative transcription factors responding 30 min after a 100 μmolm−2 pulse of blue light in the WT or ∆blu7 mutant are listed. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3620213_d3.v1
title: Additional file 12: Table S6. of The Trichoderma atroviride putative transcription factor Blu7 controls light responsiveness and tolerance

description: List of genes responding after 60 h exposure to constant white light on glucose as carbon source compared to dark control in the WT or ∆blu7 strains. (CSV 257 kb)
DOI: 10.6084/m9.figshare.c.3630866_d3.v1
title: Additional file 4: Table S3. of Prediction of response to anti-EGFR antibody-based therapies by multigene sequencing in colorectal cancer patients

description: Correlation between mutational status, including KRAS, and resistance to anti-EGFR moAb therapy. (XLSX 12 kb)
DOI: 10.15468/dl.cdsjck
title: Occurrence Download

description: A dataset containing 1991 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brevoortia tyrannus (Latrobe, 1802)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1991 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039139-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630842_d10.v1
title: MOESM16 of The cohesin-associated protein Wapal is required for proper Polycomb-mediated gene silencing

description: Additional file 16: Table S2. List of datasets, total # of reads, and # of aligned reads used.
DOI: 10.6084/m9.figshare.c.3630866_d4.v1
title: Additional file 2: Table S1. of Prediction of response to anti-EGFR antibody-based therapies by multigene sequencing in colorectal cancer patients

description: Sequences and positions in the human genome of primers employed for amplification of regions of interest. (XLSX 69 kb)
DOI: 10.6084/m9.figshare.c.3630884_d1.v1
title: Additional file 1: Table S1. of Flashy flagella: flagellin modification is relatively common and highly versatile among the Enterobacteriaceae

description: Enterobacteriaceae strains analysed in this study. The deep-branching clade to which they belong (Fig. 1), the presence/absence of fliDCAZ loci, the NCBI accession numbers of the contigs on which these loci occur, and presence/absence of FGI and FMI loci are indicated. Table S2. Characteristics of FGI+ Enterobacteriaceae and their flagellin glycosylation islands. The isolation sources and deep-branching clade to which they belong in the Enterobacteriaceae phylogeny (Fig. 1) are indicated for each of the FGI+ enterobacterial strains. The sizes, G + C contents, G + C deviation from the rest of the genome and number of proteins encoded on each FGI are shown. Table S3. Characteristics of FMI+ Enterobacteriaceae and their flagellin methylation islands. The isolation sources and deep-branching clade to which they belong in the Enterobacteriaceae phylogeny (Fig. 1) are indicated for each of the FMI+ enterobacterial strains. The sizes, G + C contents, G + C deviation from the rest of the genome and number of proteins encoded on each FMI are shown. Table S4. Annotations of the proteins encoded on the enterobacterial FGIs. The number of strains and genera in which orthologs of each distinct protein are encoded within the FGIs are indicated, as well as the closest non-enterobacterial Blast hit, obtained by BlastP analysis against the NCBI non-redundant protein database. Orthologs were only considered among the top 500 BLAST hits and for those orthologs with &gt; 30 % amino acid identity to the query protein. The putative function and conserved domains observed after BLAST analyses against the NCBI protein and conserved domain databases are shown. Table S5. Genomics inserts in the fliDCAZ loci of FGI−/FMI− Enterobacteriaceae. The insert size, G + C content, G + C deviation from the rest of the genome, number of proteins encoded and putative functions of the encoded proteins in each insert are shown. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.c.3630893_d1.v1
title: Additional file 3: of Systematic review of health state utility values for economic evaluation of colorectal cancer

description: Summary of mapping studies. (XLSX 9.22 KB)
DOI: 10.15468/dl.y3u22q
title: Occurrence Download

description: A dataset containing 690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ips pini (Say & T., 1826)",
 "Year 2000-2024"
 ]
}

 The dataset includes 690 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039140-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635525_d2.v1
title: MOESM4 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 4. Raw data (in RData format) used PPD scoring of cassava cultivars during storage (Fig. 4-Right).
DOI: 10.6084/m9.figshare.c.3635525_d3.v1
title: MOESM2 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 2. Raw data (in csv format) of cyanogenic glucosides used for decision tree model of Fig. 3a.
DOI: 10.6084/m9.figshare.c.3635525_d4.v1
title: MOESM6 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 6. Raw data (csv format) of scavengers of reactive oxygen species used for decision tree model of Fig. 3c.
DOI: 10.6084/m9.figshare.c.3635525_d5.v1
title: MOESM7 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 7. Raw data (csv format) of secondary metabolites used for decision tree model of Fig. 3d.
DOI: 10.6084/m9.figshare.c.3635525_d7.v1
title: MOESM5 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 5. An html report of all statistical analyses conducted in the manuscript and produced in R Software (version 3.2.2).
DOI: 10.6084/m9.figshare.c.3635525_d6.v1
title: MOESM9 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 9. Raw data (RData format) of all compounds studied in this manuscript (cyanogenics, enzymes, ROS-scavengers, secondary metabolites, sugars and organic acids) used for decision tree model of Fig. 3f, two-way ANOVA and OLS-regression models.
DOI: 10.6084/m9.figshare.c.3635525_d9.v1
title: MOESM8 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 8. Raw data (csv format) of sugars and organic acids used for decision tree model of Fig. 3e.
DOI: 10.6084/m9.figshare.c.3635525_d8.v1
title: MOESM3 of Metabolomic, enzymatic, and histochemical analyzes of cassava roots during postharvest physiological deterioration

description: Additional file 3. Raw data (in csv format) of enzymes used for decision tree model of Fig. 3b.
DOI: 10.6084/m9.figshare.c.3635528_d2.v1
title: Additional file 4: Table S3. of A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions

description: Relative expression amount of the 1510 proteins among the treatment and repliactions. (XLS 510 kb)
DOI: 10.6084/m9.figshare.c.3635528_d3.v1
title: Additional file 6: Table S4. of A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions

description: Differntailly expressed protein in Tong88-7. (XLS 63 kb)
DOI: 10.6084/m9.figshare.c.3635528_d4.v1
title: Additional file 1: Table S1. of A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions

description: List of total 2626 identified non-redundant proteins and their spectral counts in each sample. (XLS 530 kb)
DOI: 10.6084/m9.figshare.c.3639554_d4.v1
title: Additional file 5: of 
                     De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

description: Expression statistics and annotation information for each contig. Contig name, size (in bp), raw number of reads for each library (GA1, GA2, RA1, RA2), GO annotation (first line of the BLAST2GO output), blastx on nr (accession of the first hit, percent of identity, description), OMCL clustering in the pairwise comparison with the pea aphid genome (number of genes in the gene family, number of species, number of pea aphid genes and number of phylloxera genes). (ODS 4225 kb)
DOI: 10.6084/m9.figshare.c.3639554_d5.v1
title: Additional file 1: of 
                     De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

description: Primer sequences used for qRT-PCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3639569_d1.v1
title: Additional file 1: of SAMSA: a comprehensive metatranscriptome analysis pipeline

description: Differentially expressed transcripts when comparing between wild-type and Tyk2-deficient mice in DSS-induced colitis. This is a tab-delimited file, with all entries included, sorted by ascending multiple hypothesis-adjusted p value. (XLS 3680 kb)
DOI: 10.15468/dl.8k68qy
title: Occurrence Download

description: A dataset containing 262 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brosme brosme (Ascanius, 1772)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 262 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039142-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74fs2r
title: Occurrence Download

description: A dataset containing 251 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malawi",
 "TaxonKey is Polemaetus bellicosus (Daudin, 1800)",
 "Year 2012-2024"
 ]
}

 The dataset includes 251 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039141-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3639581_d3.v1
title: Additional file 1: of Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7

description: Cq values of 180 pri-miRNAs in leaves and roots measured using an RT-qPCR platform. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.c.3641531_d3.v1
title: Additional file 2: of A novel group of diverse Polinton-like viruses discovered by metagenome analysis

description: Geographical origins of the PLV. (XLSX 273 kb)
DOI: 10.6084/m9.figshare.c.3641531_d2.v1
title: Additional file 4: of A novel group of diverse Polinton-like viruses discovered by metagenome analysis

description: PhyML trees (Newick format), trimmed alignments used for phylogenetic tree construction, and original alignments for MCP, ATPase and pDNAP. (TXT 510 kb)
DOI: 10.6084/m9.figshare.c.3641531_d4.v1
title: Additional file 1: of A novel group of diverse Polinton-like viruses discovered by metagenome analysis

description: Annotated genomes of Polinton-like viruses. (TXT 748 kb)
DOI: 10.6084/m9.figshare.c.3641534_d1.v1
title: MOESM5 of A frameshift mutation in GON4L is associated with proportionate dwarfism in Fleckvieh cattle

description: Additional file 5: Table S2. Annotation of ten candidate causal variants. The functional consequence of ten candidate causal variants was obtained from Ensembl using the Variant Effect Predictor tool.
DOI: 10.6084/m9.figshare.c.3641534_d4.v1
title: MOESM6 of A frameshift mutation in GON4L is associated with proportionate dwarfism in Fleckvieh cattle

description: Additional file 6: Table S3. Genotype distribution of ten candidate causal mutations for dwarfism in 1147 animals from the 1000 bull genomes project. Alternate allele frequency and genotype distribution of ten variants in 29 breeds (homozygous animals for the reference allele | heterozygous animals | homozygous animals for the alternate allele). Blue color indicates two variants that were not polymorphic among the 1147 sequenced animals.
DOI: 10.6084/m9.figshare.c.3643421_d13.v1
title: Additional file 2: Table S1. of Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi

description: Newly Annotated and Modified TcTS. (a) 735 TcTS genes annotated as “real”; full-length containing both signal peptide and GPI anchor motifs and whose amino acid translations resulted in no in-frame stop codons; (b) List of all TcTS genes; (c) List of newly annotated TcTS and those whose bounds were modified in this study. Temporary IDs were assigned to each sequence by adding “2000” followed by a unique identifier for each newly discovered sequence on a particular contig and by pre-pending “1000” to the unique identifier for each modified sequence. (d) Locations of all TcTS genes and (e) newly identified, and modified TcTS on the T. cruzi chromosomes. Nucleotide sequences are indicated as “full-length” if they encoded both a signal sequence and GPI-anchor addition site, “partial” if encoding a signal sequence but not a GPI anchor addition site, and “pseudogene” if lacking a signal sequence. Sequences whose translations contain in-frame stop codon(s) are annotated with “in-frame stop” (f) List of 40 “model” full-length TcTS genes of at least 2Kb in length and containing both a signal peptide and GPI anchor motif. (XLSX 572 kb)
DOI: 10.6084/m9.figshare.c.3643433_d7.v1
title: Additional file 12: Table S1. of Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species

description: (XLSX 81Â kb)
DOI: 10.15468/dl.95kz68
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brosmophycis marginata (Ayres, 1854)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 61 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039143-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3645239_d3.v1
title: Additional file 1: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Positive control genes. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3645239_d5.v1
title: Additional file 2: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: The impact of data integration on the detection of differential expression following sleep deprivation (SD). Differentially expressed genes detected, integrating all studies (Fig.Â 1). (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3645239_d6.v1
title: Additional file 6: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Clusters of differentially expressed genes as defined on the heatmap in Fig.Â 3b. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.c.3645239_d7.v1
title: Additional file 5: of Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

description: Differential expression due to circadian time following RUV normalization. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3645257_d5.v1
title: Additional file 2: of Systematic review of outcome domains and instruments used in clinical trials of tinnitus treatments in adults

description: TINNET WG5 master file. An editable version of the data master file. (XLSX 313 kb)
DOI: 10.6084/m9.figshare.c.3645269_d4.v1
title: Additional file 20: Table S2. of Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

description: Spearman's correlation coefficients and Spearman's partial correlations controlling for mRNA abundance to assess an association between codon optimality and mRNA synthesis rates. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3653972_d4.v1
title: Additional file 6: of Molecular determinants of the adrenal gland functioning related to stress-sensitive hypertension in ISIAH rats

description: Differentially expressed genes (DEGs) in GO term groups, which might be important for the development of the stress-sensitive hypertension in ISIAH rats. (XLS 303 kb)
DOI: 10.6084/m9.figshare.c.3653924_d13.v1
title: Additional file 2: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: List of Pseudomonas syringae strains selected for phylogenetic analysis (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3653963_d6.v1
title: Additional file 4: of Evolution of mitochondrial genomes in Baikalian amphipods

description: Summary of codon usage in protein coding genes of mitochondrial genomes of studied Baikalian amphipods. Bold notations indicate species with incomplete protein coding sequences. Sign â  #â   indicates total number of certain codon in protein-coding sequences of every species; â  %â   indicates percent of certain codon in total coding sequence in every species. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3653963_d7.v1
title: Additional file 3: of Evolution of mitochondrial genomes in Baikalian amphipods

description: Organization of the mitochondrial genomes of Baikalian amphipods under study. The incomplete stop codons are labeled in the tables with parentheses. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3653972_d6.v1
title: Additional file 4: of Molecular determinants of the adrenal gland functioning related to stress-sensitive hypertension in ISIAH rats

description: Functional annotation of differentially expressed genes (DEGs) found in 3-month old ISIAH and WAG adrenal glands. (XLS 148 kb)