cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15742398
title: Learning through Practice: Teaching Empirical Software Engineering for Undergraduate Students

description: Abstract Empirical Software Engineering (ESE) is essential for understanding the benefits and limitations of existing software engineering solutions. The evidence obtained through experiments guides the evolution of this area and optimizes the use of effort in relevant research that solves real problems or gaps. In ESE teaching, the challenge arises of preparing future software engineers to plan, conduct, and analyze experiments. This article reports on an experience of teaching ESE to 54 undergraduate students in an elective course, using Active Learning. To this end, we describe the activities carried out during the course, and to understand the effect of Active Learning, we conducted a survey using an online questionnaire. Twenty-seven students from the class consented to take part in the survey. The results show that 77.7% of the respondents had little or no experience of ESE before the course. At the end of the course, around 88.2% reported greater confidence in carrying out research in the area. The hypothesis test showed a significant increase in knowledge of the course's content, emphasizing the topics of surveys and empirical studies. Correlation analysis revealed that the perceived contribution of the course is positively associated with student motivation. Despite some challenges, the students highlighted the methodology applied as being of great value to their training and entry into the job market. The experience of using Active Learning to teach ESE showed that, as well as contributing to the students' education, the methodology gave them more confidence and motivation, which suggests the importance of pedagogical approaches that are closer to practice.
DOI: 10.7910/dvn/bcvrsh
title: Optimal duration of extracorporeal cardiopulmonary resuscitation for favorable neurological outcomes

description: Optimal duration of extracorporeal cardiopulmonary resuscitation for favorable neurological outcomes
DOI: 10.34740/kaggle/dsv/9900263
title: Hotel Booking Dataset Analysis and Cancellation Tr
DOI: 10.15468/dl.vh3w4t
title: Occurrence Download

description: A dataset containing 784 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Adonis pyrenaica DC."
 ]
}

 The dataset includes 784 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013494-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wrapk
title: Occurrence Download

description: A dataset containing 12422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is North America",
 "Country is Mexico",
 "GadmGid is MEX.23_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 12422 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013495-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c94et2
title: Occurrence Download

description: A dataset containing 1692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-141.19417 10.82233,-52.80583 10.82233,-52.80583 46.17767,-141.19417 46.17767,-141.19417 10.82233))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Euphorbia antisyphilitica Zucc."
 ]
}

 The dataset includes 1692 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013496-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9p67ct
title: Occurrence Download

description: A dataset containing 821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-132.24874 21.10051,-82.75126 21.10051,-82.75126 40.89949,-132.24874 40.89949,-132.24874 21.10051))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia greggii A.Gray"
 ]
}

 The dataset includes 821 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013497-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hwvr2
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-129.01650 12.89340,-75.98350 12.89340,-75.98350 34.10660,-129.01650 34.10660,-129.01650 12.89340))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Caesalpinia palmeri S.Watson"
 ]
}

 The dataset includes 144 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013498-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfgt5b
title: Occurrence Download

description: A dataset containing 274 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.84163 23.82574,-95.34344 23.82574,-95.34344 35.62502,-124.84163 35.62502,-124.84163 23.82574))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vitex mollis Kunth"
 ]
}

 The dataset includes 274 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013499-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbjmqp
title: Occurrence Download

description: A dataset containing 464 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haemorhous mexicanus griscomi (R.T.Moore, 1939)"
 ]
}

 The dataset includes 464 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013500-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4jp49
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-135.65864 3.23654,-54.34136 3.23654,-54.34136 35.76346,-135.65864 35.76346,-135.65864 3.23654))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sideroxylon tepicense (Standl.) T.D.Penn."
 ]
}

 The dataset includes 93 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013502-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gykwhu
title: Occurrence Download

description: A dataset containing 3675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Bougainvillea Comm. ex Juss."
 ]
}

 The dataset includes 3675 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013501-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13744029
title: Genomic data of CRBC and CRVC

description: Reference genomes of root microbes are essential for metagenomic analyses and mechanistic studies of crop root microbiomes. By combining high-throughput bacterial cultivation with metagenomic sequencing, we constructed comprehensive bacterial and viral genome collections from the roots of wheat, rice, maize, and Medicago. The crop root bacterial genome collection (CRBC) significantly expands the quantity and phylogenetic diversity of publicly available crop root bacterial genomes, with 6,699 bacterial genomes (68.9 % from isolates) and 1,817 novel species, expanding crop root bacterial diversity by 290.6%. The crop root viral genome collection (CRVC) contains 9,736 nonredundant viral genomes, with 1,572 previously unreported genus-level clusters in crop roots. From these data, we identified conserved bacterial functions enriched in root microbiomes across multiple crops and soil sources and uncovered previously unexplored bacteria–virus connections in crop root ecosystems. Together, the CRBC and CRVC serve as valuable resources for investigating microbial mechanisms and applications, supporting sustainable agriculture.

The genomic data of crop root associated bacteria and virus are available under this accession.
DOI: 10.5281/zenodo.14091751
title: Genomic data of CRBC and CRVC

description: Reference genomes of root microbes are essential for metagenomic analyses and mechanistic studies of crop root microbiomes. By combining high-throughput bacterial cultivation with metagenomic sequencing, we constructed comprehensive bacterial and viral genome collections from the roots of wheat, rice, maize, and Medicago. The crop root bacterial genome collection (CRBC) significantly expands the quantity and phylogenetic diversity of publicly available crop root bacterial genomes, with 6,699 bacterial genomes (68.9 % from isolates) and 1,817 novel species, expanding crop root bacterial diversity by 290.6%. The crop root viral genome collection (CRVC) contains 9,736 nonredundant viral genomes, with 1,572 previously unreported genus-level clusters in crop roots. From these data, we identified conserved bacterial functions enriched in root microbiomes across multiple crops and soil sources and uncovered previously unexplored bacteria–virus connections in crop root ecosystems. Together, the CRBC and CRVC serve as valuable resources for investigating microbial mechanisms and applications, supporting sustainable agriculture.

The genomic data of crop root associated bacteria and virus are available under this accession.
DOI: 10.15468/dl.e9edt4
title: Occurrence Download

description: A dataset containing 1258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-122.84669 20.44119,-91.66291 20.44119,-91.66291 32.91471,-122.84669 32.91471,-122.84669 20.44119))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycium berlandieri Dunal"
 ]
}

 The dataset includes 1258 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013503-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4rwpv
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Adonis pyrenaica DC."
 ]
}

 The dataset's 3 records were derived from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013493-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6g4562
title: Occurrence Download

description: A dataset containing 9650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Spinus pinus (A.Wilson, 1810)"
 ]
}

 The dataset includes 9650 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013504-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27626259
title: raw data.xlsx

description: Data for GRL
DOI: 10.6084/m9.figshare.27626259.v1
title: raw data.xlsx

description: Data for GRL
DOI: 10.5281/zenodo.14159866
title: Data sheet space truss
DOI: 10.5281/zenodo.14159867
title: Data sheet space truss
DOI: 10.15468/dl.fv534r
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ephedra sinica Stapf, Abies chensiensis Tiegh., Larix potaninii Batalin, Picea neoveitchii Mast., Pseudotsuga sinensis Dode, Taxus chinensis (Pilg.) Rehd., Taxus mairei (Lemée & Lév.) S.Y.Hu ex T.S.Liu, Torreya fargesii Franch., Actinidia arguta (Siebold & Zucc.) Planch. ex Miq., Actinidia callosa Lindl., Actinidia callosa Lindl.)",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (China)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 72 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013505-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yce8wk
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spinus pinus macropterus (Bonaparte, 1850)"
 ]
}

 The dataset includes 215 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013506-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4f3dx
title: Occurrence Download

description: A dataset containing 12018 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Spinus notatus (Du Bus de Gisignies, 1847)"
 ]
}

 The dataset includes 12018 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013507-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14095419
title: Gene catalogs and KEGG annotation related to root metagenomic samples

description: Reference genomes of root microbes are essential for metagenomic analyses and mechanistic studies of crop root microbiomes. Combining high-throughput bacterial cultivation with metagenomic sequencing, we constructed comprehensive bacterial and viral genome collections from the roots of wheat, rice, maize, and Medicago. The crop root bacterial genome collection (CRBC) significantly expands the quantity and phylogenetic diversity of publicly available crop root bacterial genomes, with 6,699 bacterial genomes (68.9 % from isolates) and 1,817 novel species, expanding crop root bacterial diversity by 290.6%. The crop root viral genome collection (CRVC) contains 9,736 nonredundant viral genomes, with 1,572 previously unreported genus-level clusters in crop roots. From these data, we identified conserved bacterial functions enriched in root microbiomes across soils and host species and uncovered previously unexplored bacteria–virus connections in crop root ecosystems. Together, the CRBC and CRVC serve as valuable resources for investigating microbial mechanisms and applications, supporting sustainable agriculture. 

 

The gene sets of 14 datasets are available under this accession.
DOI: 10.5281/zenodo.14095420
title: Gene catalogs and KEGG annotation related to root metagenomic samples

description: Reference genomes of root microbes are essential for metagenomic analyses and mechanistic studies of crop root microbiomes. Combining high-throughput bacterial cultivation with metagenomic sequencing, we constructed comprehensive bacterial and viral genome collections from the roots of wheat, rice, maize, and Medicago. The crop root bacterial genome collection (CRBC) significantly expands the quantity and phylogenetic diversity of publicly available crop root bacterial genomes, with 6,699 bacterial genomes (68.9 % from isolates) and 1,817 novel species, expanding crop root bacterial diversity by 290.6%. The crop root viral genome collection (CRVC) contains 9,736 nonredundant viral genomes, with 1,572 previously unreported genus-level clusters in crop roots. From these data, we identified conserved bacterial functions enriched in root microbiomes across soils and host species and uncovered previously unexplored bacteria–virus connections in crop root ecosystems. Together, the CRBC and CRVC serve as valuable resources for investigating microbial mechanisms and applications, supporting sustainable agriculture. 

 

The gene sets of 14 datasets are available under this accession.
DOI: 10.57841/casdc.0004081
title: XDA24020300-专利
DOI: 10.15468/dl.naqh3h
title: Occurrence Download

description: A dataset containing 1276945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is 2010",
 "DecimalLongitude is greater than or equal to 7.0",
 "DecimalLongitude is less than or equal to 15.5",
 "DecimalLatitude is greater than or equal to 54.5",
 "DecimalLatitude is less than or equal to 58.0"
 ]
}

 The dataset includes 1276945 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013492-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jy6vp5
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spinus notatus forreri (Salvin & Godman, 1886)"
 ]
}

 The dataset includes 242 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013508-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u5t9zn
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "Geometry MULTIPOLYGON (((142.36 -29.01, 142.36 -29.39, 142.74 -29.39, 142.74 -29.01, 142.36 -29.01)))"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013509-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13918136
title: BGCs of CRBC (part 1)

description: Reference genomes of root microbes are essential for metagenomic analyses and mechanistic studies of crop root microbiomes. Combining high-throughput bacterial cultivation with metagenomic sequencing, we constructed comprehensive bacterial and viral genome collections from the roots of wheat, rice, maize, and Medicago. The crop root bacterial genome collection (CRBC) significantly expands the quantity and phylogenetic diversity of publicly available crop root bacterial genomes, with 6,699 bacterial genomes (68.9 % from isolates) and 1,817 novel species, expanding crop root bacterial diversity by 290.6%. The crop root viral genome collection (CRVC) contains 9,736 nonredundant viral genomes, with 1,572 previously unreported genus-level clusters in crop roots. From these data, we identified conserved bacterial functions enriched in root microbiomes across soils and host species and uncovered previously unexplored bacteria–virus connections in crop root ecosystems. Together, the CRBC and CRVC serve as valuable resources for investigating microbial mechanisms and applications, supporting sustainable agriculture. 

 

CRBC-related BGCs data is divided into two parts because the file is large.
DOI: 10.5281/zenodo.13918137
title: BGCs of CRBC (part 1)

description: Reference genomes of root microbes are essential for metagenomic analyses and mechanistic studies of crop root microbiomes. Combining high-throughput bacterial cultivation with metagenomic sequencing, we constructed comprehensive bacterial and viral genome collections from the roots of wheat, rice, maize, and Medicago. The crop root bacterial genome collection (CRBC) significantly expands the quantity and phylogenetic diversity of publicly available crop root bacterial genomes, with 6,699 bacterial genomes (68.9 % from isolates) and 1,817 novel species, expanding crop root bacterial diversity by 290.6%. The crop root viral genome collection (CRVC) contains 9,736 nonredundant viral genomes, with 1,572 previously unreported genus-level clusters in crop roots. From these data, we identified conserved bacterial functions enriched in root microbiomes across soils and host species and uncovered previously unexplored bacteria–virus connections in crop root ecosystems. Together, the CRBC and CRVC serve as valuable resources for investigating microbial mechanisms and applications, supporting sustainable agriculture. 

 

CRBC-related BGCs data is divided into two parts because the file is large.
DOI: 10.15468/dl.yuum5n
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "GeoDistance is in a distance of 0.5km from (-33.7,151.3)"
 ]
}

 The dataset includes 103 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013510-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66snfe
title: Occurrence Download

description: A dataset containing 4883 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Peucaea botterii (P.L.Sclater, 1858)"
 ]
}

 The dataset includes 4883 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013511-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27711249
title: Processed Data for 'Exploration of TPU Architectures for the OptimizedTransformer in Drainage Crossing Detection'

description: This dataset is intended for the reproducability of the methods in 'Exploration of TPU Architectures for the Optimized Transformer in Drainage Crossing Detection', along with the provided GitHub repository at https://github.com/SHUs-Lab/BTSD24AN.The dataset consists of 6,012 LiDAR-derived DEM georeferenced rasters in TIF format, each with an 800m x 800m extent and a cell size of 1m x 1m. Elevation data is stored as 32-bit floating point values, indicating meters above sea level, and comes from the USGS 3DEP program.The rasters cover four watersheds in the Continental United States: Sacramento-Stone Corral in California, Vermilion River in Illinois, Maple River in North Dakota, and West Fork Big Blue in Nebraska. Drainage crossings within these watersheds were labeled as centroids, and corresponding rasters containing these centroids were extracted. Bounding boxes of 100m x 100m were defined around these centroids, and the data were converted to the COCO format for use with the DETR model.After filtering out anomalous rasters, 6,007 rasters with 13,141 drainage crossing bounding boxes were used. The Maple River Watershed data was reserved for transfer learning.The directory structure is as follows:<pre>processed_data<br>├── initial_data<br>│   ├── annotations<br>│   ├── test<br>│   ├── train<br>│   └── validate<br>└── transfer_data<br> ├── annotations<br> └── test</pre>