cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3550494
title: Appendix A. Tables showing stream habitat characteristics and stream invertebrates and figures showing a stream site map, leaf litter chemistry, and microbial respiration and diversity for streams at Malcolm Knapp Research Forest, British Columbia, Canada.

description: Tables showing stream habitat characteristics and stream invertebrates and figures showing a stream site map, leaf litter chemistry, and microbial respiration and diversity for streams at Malcolm Knapp Research Forest, British Columbia, Canada.
DOI: 10.6084/m9.figshare.3550491
title: Appendix B. Methods for microbial community analyses using polymerase chain reaction (PCR) and terminal restriction fragment length polymorphisms (TRFLP).

description: Methods for microbial community analyses using polymerase chain reaction (PCR) and terminal restriction fragment length polymorphisms (TRFLP).
DOI: 10.6084/m9.figshare.3550491.v1
title: Appendix B. Methods for microbial community analyses using polymerase chain reaction (PCR) and terminal restriction fragment length polymorphisms (TRFLP).

description: Methods for microbial community analyses using polymerase chain reaction (PCR) and terminal restriction fragment length polymorphisms (TRFLP).
DOI: 10.6084/m9.figshare.3550488
title: Appendix A. Summary of variables used for each 50-km2 grid location in the study.

description: Summary of variables used for each 50-km2 grid location in the study.
DOI: 10.6084/m9.figshare.3550488.v1
title: Appendix A. Summary of variables used for each 50-km2 grid location in the study.

description: Summary of variables used for each 50-km2 grid location in the study.
DOI: 10.6084/m9.figshare.3550485
title: Appendix B. The proportion of terrestrial biomes (Biome) where fire was detected over the study period (Fire), and where fire was detected in three or more months (3+ months), and that proportion of the global study area covered by each biome (Global). Note that mangroves were removed for this analysis.

description: The proportion of terrestrial biomes (Biome) where fire was detected over the study period (Fire), and where fire was detected in three or more months (3+ months), and that proportion of the global study area covered by each biome (Global). Note that mangroves were removed for this analysis.
DOI: 10.6084/m9.figshare.3550485.v1
title: Appendix B. The proportion of terrestrial biomes (Biome) where fire was detected over the study period (Fire), and where fire was detected in three or more months (3+ months), and that proportion of the global study area covered by each biome (Global). Note that mangroves were removed for this analysis.

description: The proportion of terrestrial biomes (Biome) where fire was detected over the study period (Fire), and where fire was detected in three or more months (3+ months), and that proportion of the global study area covered by each biome (Global). Note that mangroves were removed for this analysis.
DOI: 10.6084/m9.figshare.3550482
title: Appendix C. Boxplots of regression coefficients for SOILM:BIOME interactions.

description: Boxplots of regression coefficients for SOILM:BIOME interactions.
DOI: 10.6084/m9.figshare.3550482.v1
title: Appendix C. Boxplots of regression coefficients for SOILM:BIOME interactions.

description: Boxplots of regression coefficients for SOILM:BIOME interactions.
DOI: 10.6084/m9.figshare.3550476
title: Appendix A. Mathematical details of spatial integral projection models.

description: Mathematical details of spatial integral projection models.
DOI: 10.6084/m9.figshare.3550476.v1
title: Appendix A. Mathematical details of spatial integral projection models.

description: Mathematical details of spatial integral projection models.
DOI: 10.6084/m9.figshare.3550473
title: Appendix A. Historical trends in winter temperature, annual precipitation, and annual snowfall at the USSES.

description: Historical trends in winter temperature, annual precipitation, and annual snowfall at the USSES.
DOI: 10.6084/m9.figshare.3550470
title: Appendix B. Abundance of Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita observed in the mapped quadrats over the study period.

description: Abundance of Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita observed in the mapped quadrats over the study period.
DOI: 10.6084/m9.figshare.3550467
title: Appendix C. Graphs of mean vital rate functions for Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.

description: Graphs of mean vital rate functions for Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.
DOI: 10.6084/m9.figshare.3550467.v1
title: Appendix C. Graphs of mean vital rate functions for Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.

description: Graphs of mean vital rate functions for Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.
DOI: 10.6084/m9.figshare.3550464
title: Appendix D. Statistical models describing the demography of Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.

description: Statistical models describing the demography of Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.
DOI: 10.6084/m9.figshare.3550461
title: Appendix A. Site coordinates and soil characteristics at Lobelia siphilitica population sites.

description: Site coordinates and soil characteristics at Lobelia siphilitica population sites.
DOI: 10.6084/m9.figshare.3550464.v1
title: Appendix D. Statistical models describing the demography of Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.

description: Statistical models describing the demography of Pseudoroegnaria spicata, Hesperostipa comata, and Artemisia tripartita.
DOI: 10.6084/m9.figshare.3550461.v1
title: Appendix A. Site coordinates and soil characteristics at Lobelia siphilitica population sites.

description: Site coordinates and soil characteristics at Lobelia siphilitica population sites.
DOI: 10.6084/m9.figshare.3550458
title: Appendix A. Characteristics, distribution, and phylogenetics of the two Trema cryptic species.

description: Characteristics, distribution, and phylogenetics of the two Trema cryptic species.
DOI: 10.6084/m9.figshare.3550455
title: Appendix B. Soil characteristics of gaps and landslides, statistical analyses of experimental results, composition of arbuscular mycorrhizal fungal (AMF) communities in the field, and AMF colonization in experiment 2.

description: Soil characteristics of gaps and landslides, statistical analyses of experimental results, composition of arbuscular mycorrhizal fungal (AMF) communities in the field, and AMF colonization in experiment 2.
DOI: 10.6084/m9.figshare.3550458.v1
title: Appendix A. Characteristics, distribution, and phylogenetics of the two Trema cryptic species.

description: Characteristics, distribution, and phylogenetics of the two Trema cryptic species.
DOI: 10.6084/m9.figshare.3550455.v1
title: Appendix B. Soil characteristics of gaps and landslides, statistical analyses of experimental results, composition of arbuscular mycorrhizal fungal (AMF) communities in the field, and AMF colonization in experiment 2.

description: Soil characteristics of gaps and landslides, statistical analyses of experimental results, composition of arbuscular mycorrhizal fungal (AMF) communities in the field, and AMF colonization in experiment 2.
DOI: 10.6084/m9.figshare.3550452
title: Appendix C. Methods used for experiments 2 and 3 and the field experiment.

description: Methods used for experiments 2 and 3 and the field experiment.
DOI: 10.6084/m9.figshare.3550449
title: Appendix A. Detailed methods for ant-exclusion experiments.

description: Detailed methods for ant-exclusion experiments.
DOI: 10.6084/m9.figshare.3550452.v1
title: Appendix C. Methods used for experiments 2 and 3 and the field experiment.

description: Methods used for experiments 2 and 3 and the field experiment.
DOI: 10.6084/m9.figshare.3550449.v1
title: Appendix A. Detailed methods for ant-exclusion experiments.

description: Detailed methods for ant-exclusion experiments.
DOI: 10.6084/m9.figshare.3550446
title: Appendix B. Estimation of colony-size variables from estimator domatia.

description: Estimation of colony-size variables from estimator domatia.
DOI: 10.6084/m9.figshare.3550443
title: Appendix C. Quantity of ants and defensive behavior.

description: Quantity of ants and defensive behavior.
DOI: 10.6084/m9.figshare.3550446.v1
title: Appendix B. Estimation of colony-size variables from estimator domatia.

description: Estimation of colony-size variables from estimator domatia.
DOI: 10.6084/m9.figshare.3550443.v1
title: Appendix C. Quantity of ants and defensive behavior.

description: Quantity of ants and defensive behavior.
DOI: 10.6084/m9.figshare.3550440
title: Appendix D. Detailed methods for controlled-diet lab experiments.

description: Detailed methods for controlled-diet lab experiments.
DOI: 10.6084/m9.figshare.3550440.v1
title: Appendix D. Detailed methods for controlled-diet lab experiments.

description: Detailed methods for controlled-diet lab experiments.
DOI: 10.6084/m9.figshare.3550437
title: Appendix E. A table presenting results from path analysis of indirect effects of plant investments on herbivory.

description: A table presenting results from path analysis of indirect effects of plant investments on herbivory.
DOI: 10.6084/m9.figshare.3550437.v1
title: Appendix E. A table presenting results from path analysis of indirect effects of plant investments on herbivory.

description: A table presenting results from path analysis of indirect effects of plant investments on herbivory.
DOI: 10.6084/m9.figshare.3550434
title: Appendix A. Interaction frequencies in a plant–frugivore network of 88 frugivore and 33 plant species from Kakamega Forest, Kenya.

description: Interaction frequencies in a plant–frugivore network of 88 frugivore and 33 plant species from Kakamega Forest, Kenya.
DOI: 10.6084/m9.figshare.3550434.v1
title: Appendix A. Interaction frequencies in a plant–frugivore network of 88 frugivore and 33 plant species from Kakamega Forest, Kenya.

description: Interaction frequencies in a plant–frugivore network of 88 frugivore and 33 plant species from Kakamega Forest, Kenya.
DOI: 10.6084/m9.figshare.3550431
title: Appendix A. Results of continuous water level monitoring at Titus Bog during the 2008 growing season compared with regional monthly mean moisture measurements and 30-year average climatology.

description: Results of continuous water level monitoring at Titus Bog during the 2008 growing season compared with regional monthly mean moisture measurements and 30-year average climatology.
DOI: 10.6084/m9.figshare.3550428
title: Appendix B. Methods and results of 14C dating.

description: Methods and results of 14C dating.
DOI: 10.6084/m9.figshare.3550428.v1
title: Appendix B. Methods and results of 14C dating.

description: Methods and results of 14C dating.
DOI: 10.6084/m9.figshare.3550425
title: Appendix A. Tables and graphs for the analysis of the “something fishy” example: proportion of fish on empty stomachs by geographic location and trophic group.

description: Tables and graphs for the analysis of the “something fishy” example: proportion of fish on empty stomachs by geographic location and trophic group.
DOI: 10.6084/m9.figshare.3550422
title: Appendix B. Tables and graphs related to the analysis of the “expanding leaves” example: percentage loss of leaf area (LLA) by median expansion time and site.

description: Tables and graphs related to the analysis of the “expanding leaves” example: percentage loss of leaf area (LLA) by median expansion time and site.
DOI: 10.6084/m9.figshare.3550419
title: Appendix C. Results of Type I error simulations for binomial data, and binomial data with overdispersion.

description: Results of Type I error simulations for binomial data, and binomial data with overdispersion.
DOI: 10.6084/m9.figshare.3550416
title: Appendix D. Results of power simulations for binomial data, and binomial data with overdispersion.

description: Results of power simulations for binomial data, and binomial data with overdispersion.
DOI: 10.6084/m9.figshare.3550419.v1
title: Appendix C. Results of Type I error simulations for binomial data, and binomial data with overdispersion.

description: Results of Type I error simulations for binomial data, and binomial data with overdispersion.
DOI: 10.6084/m9.figshare.3550416.v1
title: Appendix D. Results of power simulations for binomial data, and binomial data with overdispersion.

description: Results of power simulations for binomial data, and binomial data with overdispersion.
DOI: 10.6084/m9.figshare.3550413
title: Appendix E. Results of simulations using a balanced 2 × 2 design, both for binomial data and binomial data with overdispersion.

description: Results of simulations using a balanced 2 × 2 design, both for binomial data and binomial data with overdispersion.
DOI: 10.6084/m9.figshare.3550413.v1
title: Appendix E. Results of simulations using a balanced 2 × 2 design, both for binomial data and binomial data with overdispersion.

description: Results of simulations using a balanced 2 × 2 design, both for binomial data and binomial data with overdispersion.
DOI: 10.6084/m9.figshare.3550410
title: Appendix F. Results of simulations using resampling based hypothesis testing to control Type I error in small samples.

description: Results of simulations using resampling based hypothesis testing to control Type I error in small samples.
DOI: 10.6084/m9.figshare.3550410.v1
title: Appendix F. Results of simulations using resampling based hypothesis testing to control Type I error in small samples.

description: Results of simulations using resampling based hypothesis testing to control Type I error in small samples.
DOI: 10.6084/m9.figshare.3550407
title: Supplement 1. R code demonstrating how to fit a logistic regression model, with a random intercept term, and how to use resampling-based hypothesis testing for inference.

description: File List glmmeg.R: R code demonstrating how to fit a logistic regression model, with a random intercept term, to randomly generated overdispersed binomial data. boot.glmm.R: R code for estimating <i>P</i>-values by applying the bootstrap to a GLMM likelihood ratio statistic. Description glmm.R is some example R code which show how to fit a logistic regression model (with or without a random effects term) and use diagnostic plots to check the fit. The code is run on some randomly generated data, which are generated in such a way that overdispersion is evident. This code could be directly applied for your own analyses if you read into R a data.frame called “dataset”, which has columns labelled “success” and “failure” (for number of binomial successes and failures), “species” (a label for the different rows in the dataset), and where we want to test for the effect of some predictor variable called “location”. In other cases, just change the labels and formula as appropriate. boot.glmm.R extends glmm.R by using bootstrapping to calculate P-values in a way that provides better control of Type I error in small samples. It accepts data in the same form as that generated in glmm.R.
DOI: 10.6084/m9.figshare.3550404
title: Appendix A. Ordinary least-squares regressions and geographically weighted regressions of the relationship between temperature and ln-transformed species richness of amphibians of the New World.

description: Ordinary least-squares regressions and geographically weighted regressions of the relationship between temperature and ln-transformed species richness of amphibians of the New World.
DOI: 10.6084/m9.figshare.3550404.v1
title: Appendix A. Ordinary least-squares regressions and geographically weighted regressions of the relationship between temperature and ln-transformed species richness of amphibians of the New World.

description: Ordinary least-squares regressions and geographically weighted regressions of the relationship between temperature and ln-transformed species richness of amphibians of the New World.
DOI: 10.6084/m9.figshare.3550401
title: Appendix B. Body size means of 1344 amphibian species in the New World.

description: Body size means of 1344 amphibian species in the New World.
DOI: 10.6084/m9.figshare.3550401.v1
title: Appendix B. Body size means of 1344 amphibian species in the New World.

description: Body size means of 1344 amphibian species in the New World.
DOI: 10.6084/m9.figshare.3550398
title: Appendix A. Predators of the Blackfoot Valley.

description: Predators of the Blackfoot Valley.
DOI: 10.6084/m9.figshare.3550398.v1
title: Appendix A. Predators of the Blackfoot Valley.

description: Predators of the Blackfoot Valley.
DOI: 10.6084/m9.figshare.3550395
title: Appendix B. Details of predator and/or ungulate exclusion plot construction.

description: Details of predator and/or ungulate exclusion plot construction.
DOI: 10.6084/m9.figshare.3550392
title: Appendix C. Small-mammal trapping methodology.

description: Small-mammal trapping methodology.
DOI: 10.6084/m9.figshare.3550392.v1
title: Appendix C. Small-mammal trapping methodology.

description: Small-mammal trapping methodology.
DOI: 10.6084/m9.figshare.3550389
title: Appendix D. Genereal linear model results testing for the effect of treatments on abundance of Spermophilus columbianus, Peromyscus maniculatus, and Microtus montanus.

description: Genereal linear model results testing for the effect of treatments on abundance of Spermophilus columbianus, Peromyscus maniculatus, and Microtus montanus.
DOI: 10.6084/m9.figshare.3550389.v1
title: Appendix D. Genereal linear model results testing for the effect of treatments on abundance of Spermophilus columbianus, Peromyscus maniculatus, and Microtus montanus.

description: Genereal linear model results testing for the effect of treatments on abundance of Spermophilus columbianus, Peromyscus maniculatus, and Microtus montanus.
DOI: 10.6084/m9.figshare.3550386
title: Appendix E. Survival estimates for Spermophilus columbianus during the experiment.

description: Survival estimates for Spermophilus columbianus during the experiment.
DOI: 10.6084/m9.figshare.3550386.v1
title: Appendix E. Survival estimates for Spermophilus columbianus during the experiment.

description: Survival estimates for Spermophilus columbianus during the experiment.
DOI: 10.6084/m9.figshare.3550383
title: Appendix A. Damage to Piper leaves: a summary and key.

description: Damage to Piper leaves: a summary and key.
DOI: 10.6084/m9.figshare.3550383.v1
title: Appendix A. Damage to Piper leaves: a summary and key.

description: Damage to Piper leaves: a summary and key.
DOI: 10.6084/m9.figshare.3550380
title: Appendix B. Seedlings found in 45 lowland forest fragment plots.

description: Seedlings found in 45 lowland forest fragment plots.
DOI: 10.6084/m9.figshare.3550380.v1
title: Appendix B. Seedlings found in 45 lowland forest fragment plots.

description: Seedlings found in 45 lowland forest fragment plots.
DOI: 10.6084/m9.figshare.3550377
title: Appendix A. Validating assumptions.

description: Validating assumptions.
DOI: 10.6084/m9.figshare.3550377.v1
title: Appendix A. Validating assumptions.

description: Validating assumptions.
DOI: 10.6084/m9.figshare.3550374
title: Appendix B. Decomposition rates of different wood types.

description: Decomposition rates of different wood types.
DOI: 10.6084/m9.figshare.3550371
title: Appendix C. Correlations among traits.

description: Correlations among traits.
DOI: 10.6084/m9.figshare.3550371.v1
title: Appendix C. Correlations among traits.

description: Correlations among traits.
DOI: 10.6084/m9.figshare.3550368
title: Appendix A. Seedling plot network design: description and figures.

description: Seedling plot network design: description and figures.
DOI: 10.6084/m9.figshare.3550368.v1
title: Appendix A. Seedling plot network design: description and figures.

description: Seedling plot network design: description and figures.
DOI: 10.6084/m9.figshare.3550365
title: Appendix B. Study species, with adult and seedling abundances and growth form characteristics.

description: Study species, with adult and seedling abundances and growth form characteristics.
DOI: 10.6084/m9.figshare.3550362
title: Appendix C. Results tables for GLMM and GEE models of seedling survival.

description: Results tables for GLMM and GEE models of seedling survival.
DOI: 10.6084/m9.figshare.3550365.v1
title: Appendix B. Study species, with adult and seedling abundances and growth form characteristics.

description: Study species, with adult and seedling abundances and growth form characteristics.
DOI: 10.6084/m9.figshare.3550359
title: Supplement 1. All data used in analyses of relationships among functional traits and demographic rates for trees and saplings from Barro Colorado Island, Panama.

description: File List Supplement_20100505.txt Description The Supplement_20100505.txt file is a tab-delimited ASCII file. The file contains nomenclature, wood specific gravity, seed mass, maximum height and leaf mass per area for each species. The file also contains average, 90th percentile and 95th percentile diameter growth rates and sample sizes for saplings and large trees of each species. The file also contains overall mortality rates and mortality rates of the slowest growing 50% and 25% of individuals in the previous census interval and sample sizes for saplings and large trees of each species. Missing values for functional traits and values that would be based on inadequate sample sizes for demographic variables are represented as "-99". Column definitions follow: 1 = GENUS$ - genus (truncated at 12 letters) 2 = SPECIES$ - species (truncated at 12 letters) 3 = FAMILY$ - family (truncated at 12 letters) 4 = WSG – Mean wood specific gravity (g cm-3) 5 = SEEDMASS – Mean seed dry mass (g) 6 = HEIGHT – Mean height of six largest individuals (m) 7 = LMA – Mean leaf mass per area determined from leaf discs for the six smallest individuals of each species (g m-2) 8 = RGR95SAP – 95th percentile relative growth rate for saplings (cm cm-1 yr-1) 9 = RGR90SAP – 90th percentile relative growth rate for saplings (cm cm-1 yr-1) 10 = RGRAVGSAP – Mean relative growth rate for saplings (cm cm-1 yr-1) 11 = N_RGRSAP – sample size to determine relative growth rates for saplings 12 = MRT25SAP – Mortality rate for the 25% of saplings with the slowest growth rates in the previous census (% 5 yr-1) 13 = MRT50SAP – Mortality rate for the 50% of saplings with the slowest growth rates in the previous census (% 5 yr-1) 14 = MRTALLSAP – Mortality rate for all saplings (% 5 yr-1) 15 = N_MRTSAP – sample size to determine mortality rates for saplings 16 = RGR95TRE – 95th percentile relative growth rate for large trees (cm cm-1 yr-1) 17 = RGR90TRE – 90th percentile relative growth rate for large trees (cm cm-1 yr-1) 18 = RGRAVGTRE – Mean relative growth rate for large trees (cm cm-1 yr-1) 19 = N_RGRTRE – sample size to determine relative growth rates for large trees 20 = MRT25TRE – Mortality rate for the 25% of large trees with the slowest growth rates in the previous census (% 5 yr-1) 21 = MRT50TRE – Mortality rate for the 50% of large trees with the slowest growth rates in the previous census (% 5 yr-1) 22 = MRTALLTRE – Mortality rate for all large trees (% 5 yr-1) 23 = N_MRTTRE – sample size to determine mortality rates for large trees Check sum values are: For the first row, there are 9 missing values and Checksum = 4459.035 For the final row, there are zero missing values and Checksum = 1501.341 For the fourth column, there are 5 missing values and Checksum = 74.980 For the seventh column, there is one missing value and Checksum = 7425.420
DOI: 10.6084/m9.figshare.3550356
title: Appendix A. Photographs of vegetation patches.

description: Photographs of vegetation patches.
DOI: 10.6084/m9.figshare.3550356.v1
title: Appendix A. Photographs of vegetation patches.

description: Photographs of vegetation patches.
DOI: 10.6084/m9.figshare.3550353
title: Appendix B. List of experimental vegetation patches where Neobuxbaumia mezcalaensis performance was evaluated.

description: List of experimental vegetation patches where Neobuxbaumia mezcalaensis performance was evaluated.