cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.t6zvcy
title: Occurrence Download

description: A dataset containing 215641 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Amylotheca dictyophleba, Chlorophytum crassinerve, Pelargonium gracile, Disa sagittalis, Koeleria macrantha, Acmella repens, Pelargonium bicolor, Elaeodendron croceum, Pelargonium radiatum, Koeleria spicata, Disa inflexa, Psittacanthus palmeri, Sclerolaena birchii, Poa ligulata, Melaleuca rupestris, Tetraria triangularis, Ficinia nigrescens, Melaleuca rugulosa, Navarretia leptalea, Boechera tiehmii, Carthamus dianius, Melaleuca dichroma, Puccinellia preslii, Didymocheton rufus, Melaleuca chrysantherea, Carthamus carthamoides, Ferraria glutinosa, Melaleuca aquilonia, Bobartia aphylla, Ammosperma cinereum, Neottia cordata, Delosperma echinatum, Biarum fraasianum, Erucastrum gallicum, Lepechinia calycina, Syncarpha zeyheri, Colchicum cedarbergense, Colchicum eucomoides, Delosperma klinghardtianum, Lysiana spathulata, Syncarpha loganiana, Hereroa hesperantha, Aquarius subalatus, Senegalia hereroensis, Distichlis scoparia, Malacothamnus densiflorus, Malacothamnus mendocinensis, Orianthera biloba, Malvastrum bicuspidatum, Senegalia ataxacantha, Orchis bispurium, Pauridia alba, Phanerophlebia nobilis, Cistanthe trigona, Anisodontea setosa, Trichocentrum leptotifolium, Polhillia involucrata, Epipactis persica, Armeria pubigera, Cistanthe fenzlii, Cyathophylla chlorifolia, Rosularia globulariifolia, Ledebouria minima, Amyema conspicua, Mandevilla brachysiphon, Trichanthecium natalense, Asyneuma virgatum, Alpagrostis alpina, Anemonastrum deltoideum, Arthropteris palisotii, Angophora hispida, Trichocladus crinitus, Dianthus thunbergii, Geissorhiza radians, Oxalis confertifolia, Rubus umbrosus, Gasteria nitida, Geissorhiza tenella, Bunium atlanticum, Launaea sarmentosa, Gonzalezia hypargyrea, Austrobuxus swainii, Desmazeria philistaea, Asyneuma limonifolium, Onobrychis tournefortii, Aeonium riosjordanae, Gilliesia attenuata, Anemonoides oregana, Drimia pellabergensis, Montanoa bipinnatifida, Drimia basutica, Bahiopsis tomentosa, Helogyne macrogyne, Echinocereus engelmannii, Pouzolzia parasitica, Fremontodendron californicum, Nestotus lanuginosus, Echinopterys eglandulosa, Dicrastylis flexuosa)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 215641 records from 1234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013304-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28900298
title: Additional file 2 of PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28900298.v1
title: Additional file 2 of PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.28900301
title: Additional file 3 of PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28900301.v1
title: Additional file 3 of PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.28900278
title: Additional file 2 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 2: Table S1 is the full list of differential expression results for proteomics data.
DOI: 10.6084/m9.figshare.28900278.v1
title: Additional file 2 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 2: Table S1 is the full list of differential expression results for proteomics data.
DOI: 10.6084/m9.figshare.28900281
title: Additional file 3 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 3: Table S2 is pathway enrichment results of DEPs for MDD and PTSD in DLPFC and sgPFC from Ingenuity Pathway Analysis (IPA).
DOI: 10.6084/m9.figshare.28900281.v1
title: Additional file 3 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 3: Table S2 is pathway enrichment results of DEPs for MDD and PTSD in DLPFC and sgPFC from Ingenuity Pathway Analysis (IPA).
DOI: 10.6084/m9.figshare.28900284
title: Additional file 4 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 4: Table S3 is shared differentially expressed proteins, genes and pathways between this study and previously published studies.
DOI: 10.6084/m9.figshare.28900284.v1
title: Additional file 4 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 4: Table S3 is shared differentially expressed proteins, genes and pathways between this study and previously published studies.
DOI: 10.6084/m9.figshare.28900287
title: Additional file 5 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 5: Table S4 is protein, RNA and miRNA WGCNA results.
DOI: 10.6084/m9.figshare.28900287.v1
title: Additional file 5 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 5: Table S4 is protein, RNA and miRNA WGCNA results.
DOI: 10.6084/m9.figshare.28900290
title: Additional file 6 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 6: Table S5 is SynGO analysis results for MDD or PTSD associated protein modules.
DOI: 10.6084/m9.figshare.28900290.v1
title: Additional file 6 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 6: Table S5 is SynGO analysis results for MDD or PTSD associated protein modules.
DOI: 10.6084/m9.figshare.28900293
title: Additional file 7 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 7: Table S6 is differential expression statistics for miRNA analysis.
DOI: 10.6084/m9.figshare.28900293.v1
title: Additional file 7 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 7: Table S6 is differential expression statistics for miRNA analysis.
DOI: 10.6084/m9.figshare.28900296
title: Additional file 8 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 8: Table S7 is the full miRNA GSEA pathway enrichment results.
DOI: 10.6084/m9.figshare.28900296.v1
title: Additional file 8 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 8: Table S7 is the full miRNA GSEA pathway enrichment results.
DOI: 10.6084/m9.figshare.28900299
title: Additional file 9 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 9: Table S8 is miRNA-protein expression correlation and target information.
DOI: 10.6084/m9.figshare.28900299.v1
title: Additional file 9 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 9: Table S8 is miRNA-protein expression correlation and target information.
DOI: 10.6084/m9.figshare.28900302
title: Additional file 10 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 10: Table S9 is miRNA-proteomic module interactions.
DOI: 10.6084/m9.figshare.28900302.v1
title: Additional file 10 of A multi-omic approach implicates novel protein dysregulation in post-traumatic stress disorder

description: Additional file 10: Table S9 is miRNA-proteomic module interactions.
DOI: 10.6084/m9.figshare.28900307
title: Additional file 1 of Integration of multi-omics data to unveil the molecular landscape and role of piRNAs in early-onset colorectal cancer

description: Additional file 1: Table S1. Sequences of qPCR primers. Table S2. Clinical and tumor characteristics of patients with early-onset and late-onset colorectal cancer. Table S3. GSEA analysis of the different expression genes. Table S4. Differentially expressed genes identified in the TCGA database after using inverse probability of treatment weighting method to balance baseline covariates associated with EOCRC and LOCRC. Table S5. Consistent differential methylation sites and transcription genes identified in the TCGA database. Table S6. Baseline information of CRC patients. Table S7. RNA sequences of differentially expressed piRNAs and their IDs in piRBase, piRNAdb and RNAcentral. Table S8. GSEA analysis of RNA-seq results (mimic-FR019089 vs mimic-NC). Table S9. GSEA analysis of RNA-seq results (mimic-FR019019 vs mimic-NC).
DOI: 10.6084/m9.figshare.28900307.v1
title: Additional file 1 of Integration of multi-omics data to unveil the molecular landscape and role of piRNAs in early-onset colorectal cancer

description: Additional file 1: Table S1. Sequences of qPCR primers. Table S2. Clinical and tumor characteristics of patients with early-onset and late-onset colorectal cancer. Table S3. GSEA analysis of the different expression genes. Table S4. Differentially expressed genes identified in the TCGA database after using inverse probability of treatment weighting method to balance baseline covariates associated with EOCRC and LOCRC. Table S5. Consistent differential methylation sites and transcription genes identified in the TCGA database. Table S6. Baseline information of CRC patients. Table S7. RNA sequences of differentially expressed piRNAs and their IDs in piRBase, piRNAdb and RNAcentral. Table S8. GSEA analysis of RNA-seq results (mimic-FR019089 vs mimic-NC). Table S9. GSEA analysis of RNA-seq results (mimic-FR019019 vs mimic-NC).
DOI: 10.15468/dl.grccsa
title: Occurrence Download

description: A dataset containing 1128 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phlossa conjuncta (Walker, 1855), Phlossa conjuncta (Walker, 1855), Phlossa conjuncta (Walker, 1855), Phlossa conjucta, Phlossa jianningana Yang & Jiang, 1992, Phlossa conjuncta (Walker, 1855), Phlossa conjuncta (Walker, 1855))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1128 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007030-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2hfms
title: Occurrence Download

description: A dataset containing 1220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetostoma thomsoni"
 ]
}

 The dataset includes 1220 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004297-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15871040
title: sphaeramia_nematoptera_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15871039
title: sphaeramia_nematoptera_zanfona_1.fasta.gz
DOI: 10.5281/zenodo.15869880
title: Execution-Feedback Driven Test Generation from SWE Issues

description: We have shared 8 folders containing tests for 2 benchmarks (SWT-Bench Lite and TDD-Bench Verified), 2 models (GPT-4o and Claude-3.7-Sonnet), and 2 approaches (Otter and e-Otter). Each folder contains 10 tests using different prompting techniques (e.g., planner, full, standard) and associated logs.
DOI: 10.15468/dl.u4x9ah
title: Occurrence Download

description: A dataset containing 1095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Falco rusticolus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 1095 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004298-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbzg64
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Falco rusticolus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004299-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2n24v2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Falco rusticolus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004300-250711103210423/datasets/export for details.
DOI: 10.15468/dl.nrwc7f
title: Occurrence Download

description: A dataset containing 2091 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amniataba percoides",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2091 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004301-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8jhrt
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADL9182"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004302-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xz82c8
title: Occurrence Download

description: A dataset containing 20038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Falco rusticolus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 20038 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004304-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnta3c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Falco rusticolus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004305-250711103210423/datasets/export for details.
DOI: 10.15468/dl.54d6j3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Falco rusticolus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004303-250711103210423/datasets/export for details.
DOI: 10.15468/dl.8u42hj
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Forsterygion varium",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 589 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004306-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rcr44y
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AEE9711"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004307-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15731651
title: Geospace Environmental Datasets

description: This archive documents geospatial datasets curated for environmental modeling, ecological analysis, and human impact assessment across the continental United States (CONUS). It currently includes data products from:



MODIS (remote sensing of land surface and vegetation)

GridMet (modeled air pollution and exposure surfaces)

ECMWF (reanalysis-based climate and atmospheric variables)


Each dataset entry includes metadata such as source, spatial and temporal resolution, coordinate reference system, format, licensing, and a concise summary of its intended utility.
DOI: 10.15468/dl.yvynea
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetostomus thomsoni"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004311-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7je7c
title: Occurrence Download

description: A dataset containing 39219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhinella marina",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39219 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004312-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j77zye
title: Occurrence Download

description: A dataset containing 132714 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aethusa cynapium"
 ]
}

 The dataset includes 132714 records from 864 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004265-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.