cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3821974
title: Package Freshness in Linux Distributions

description: This is a survey conducted on the package freshness in Linux distributions. The survey can be found here. An anonymised version of the responses is included, in csv format: - The first 3 columns correspond to the answers to the first question, that is to say the ranking of the distributions used by respondents. - The "perception" columns correspond to the answers to the second question: "according to you, how long does it take for the latest upstream version to be made available in the official repositories of that distribution?" Packages were divided into 6 categories: OSS: open-source end-user software, such as Firefox, LibreOffice or GIMP;<br> PS: proprietary end-user software, such as Adobe Reader, Spotify or Skype;<br> DT: development tools, such as git, Emacs or Eclipse;<br> STL: system tools and libraries, such as openSSL;<br> PLL: programming language libraries, such as Numpy, Lodash or Boost;<br> PLR: programming language runtimes such as Python, node.js or Java. - The "importance" columns correspond to the answers to the third question: "how important is it for you to stay up to date with upstream packages of the following types?" - The "reasons" columns correspond to the answers to the fourth question: "what are your main reasons for updating packages?" - The "mechanisms" columns correspond to the answers to the fifth question: "which mechanism do you use to install specific versions of packages?" The possible mechanisms are: Official package manager the distribution and its official repository (off), Official package manager of the distribution with community repositories (com), Third-party package managers (3rd) Installing manually from binaries (bin) Installing manually from source files (sources)
DOI: 10.6073/pasta/2a74046ec3c54d61b14cdaad3ecfc583
title: Climate data for D1 data loggers (CR23X and CR1000), 2000 - ongoing, daily.

description: Climatological data were collected from a Niwot Ridge climate station (D1) throughout the year. From July 5 2000 through October 23 2013, data were recorded using a Campbell Instruments CR23X data logger. Subsequently, data were recorded using a Campbell Instruments CR1000 data logger. Maximum and minimum values are recorded instantaneously, with a sampling interval of 5 seconds. Daily averages and totals were calculated from 17,280 individual measurements. This instrument was programmed to generate both hourly and daily output. Beginning in June 25 2009, 10 minute output was also generated. Daily output generated by the logger ended in 2014.
DOI: 10.17632/cmpbgnsnsd.1
title: Dataset

description: Dataset for Master Degree Paper
DOI: 10.17632/wygcn7wyrr.1
title: Dataset

description: Dataset for Master Degree Paper
DOI: 10.25387/g3.11860179
title: Supplemental Material for Chavarro et al., 2020

description: Table S1 contains the information of QTL found for seed and pod traits in previous studies.<br>Table S2 contains the RILs from the population selected based on extreme values of the phenotypic traits.<br>File S1 contains information of the genotyping calls based on the linkage map order and the phenotypic data of the traits measured following a normal distribution for the population. <br><br>Figure S1 contains the genetic linkage map for the Tirfrunner and NC 3033 RIL population. <br>
DOI: 10.25387/g3.11860179.v1
title: Supplemental Material for Chavarro et al., 2020

description: Figure 1 contains pictures of seeds and pods from the parents of the population.Figure 2 contains boxplots for seed and pod traits across the years.Figure 3 contains the phenotypic distribution for all traits in three consecutive years.Figure 4 contains Pearson correlations for seed and pod traits evaluated over three years.Figure 5 contains the genetic linkage map for the RIL population.Figure 6 contains the genetic vs physical distance distributionsFigure 7 contains the QTL overview of the QTLs identified for the populationTable 1 contains the summary statistics for the seed and pod traits in the population.Table 2 contains the analysis of variance for the traits measured in the population across the years.Table 3 contains the genetic map description.Table 4 contains the QTL information for all the traits in the population.Table 5 contains the co-localized information of QTL.Table 6 contains information of QTL co-localizing from previous studies.Table S1 contains the information of QTL found for seed and pod traits in previous studies.Table S2 contains the RILs from the population selected based on extreme values of the phenotypic traits.File S1 contains information of the genotyping calls based on the linkage map order and the phenotypic data of the traits measured following a normal distribution for the population.<br>
DOI: 10.5281/zenodo.3822556
title: Constraining properties of the next nearby core-collapse supernova with multi-messenger signals: gravitational wave frequency fits

description: 1D FLASH simulations with STIR, for alpha_lambda = 1.23, 1.25, and 1.27. Run with SFHo EOS, M1 with 12 energy groups. For more information on these simulations, see Warren, Couch, O'Connor, & Morozova (arXiv:1912.03328) and Couch, Warren, & O'Connor (2020). Includes fit to the gravitational wave peak frequency versus time post-bounce, for a functional fit of the form f = A*sqrt(t) + B*t + C, where the frequency f is in Hz and the time t is in seconds. The columns are: progenitor mass [M_sun], fit coefficient A, fit coefficient B, fit coefficient C, and the R^2 of the fit.
description: This work was funded by the NSF under award number AST-1801844, the US Department of Energy, Office of Science, Office of Nuclear Physics, under award numbers DE-SC0015904 and DE-SC0017955, and the Swedish Research Council under award number 2018-04575. This work was done using computational resources provided by the Michigan State University Institute for Cyber-Enabled Research.
description: {"references": ["Warren, Couch, O'Connor, & Morozova. \"Constraining properties of the next nearby core-collapse supernova with multi-messenger signals.\" Submitted to Ap.J. arXiv:1912.03328", "Couch, Warren, & O'Connor. \"Simulating turbulence-aided neutrino-driven core-collapse supernova explosions in one dimension.\" Ap.J. 890:2 (2020). arXiv:1902.01340"]}
DOI: 10.17632/74s7crj7xj.1
title: HNF4A and GATA6 Loss Reveals Therapeutically Actionable Subtypes in Pancreatic Cancer

description: SUPPLEMENTAL TABLE LIST Table S1. Related to Figure 1: PDCL normalized RNA-seq expression analysis. PDCL consensus clustering using Bailey classification (Squamous Vs Classical) differential gene expression analysis and PDCL class designation (Squamous or Classical). Bulk tumor signature scores of enriched gene expression pathways. Table S2. Related to Figure 1: Untargeted metabolomics and enriched metabolic pathways in Squamous vs Classical PDCLs. Table S3. Related to Figure 1: Seahorse assay: Glycolysis stress test (ECAR values) and Fatty acid Oxidation (Mitochondrial Stress Test, OCR values) in PDCLs. Lactate production and glucose uptake in PDCLs. Table S4. Related to Figure 6 and Figure S1: PDCL point mutations, germline mutations, structural variants and copy number variants. Table S5. Related to Figure 2, Figure 3 and Figure S3: siHNF4A and siGATA6 RNA-seq in Mayo 5289 PDCL. ECAR values after HNF4A knockdown in Classical PDCLs. Table S6: Related to Figure 4 and Figure S4: PDCL siRNA screen, GSK3Bi IC50 (72hr vs 144hr) and GSK3Bi ECAR values. Table S7: Related to Figure 6, Figure 7 and Figure S7: PDCL ATAC-seq analysis. ATAC-seq analysis comparing GSK3Bi initial-responders vs GSK3Bi responders. Survival analysis of PDCLs treated with GSK3Bi + ULKi + PORCNi triple inhibitor treatments. In vivo WNT7A RNAscope analysis.
DOI: 10.17632/n4c8d77224.1
title: Study of the availability of nitrogen, carbon, and phosphorus in a blend of agro-industrial digestate and wood ashes under different acidification conditions

description: Datasets and Supplementary Materials
DOI: 10.17632/zcn6h2fvz7.2
title: TOMATE: Online Multi-document Automated Table Extraction

description: Dataset and experiments for the journal article TOMATE: Online Multi-document Automated Table Extraction.
DOI: 10.5281/zenodo.3822506
title: Replica exchange molecular dynamics simulation data of designed β-hairpins (implicit solvent, AMBER ff96)

description: Raw REMD simulation data (protein only) of designed β-hairpins. AMBER ff96 and implicit solvent model is used. More details can be found in this paper: Yunhui Ge, Brandon Kier, Niels H. Andersen and Vincent A. Voelz. <em>Computational and experimental evaluation of designed beta-cap hairpins using molecular simulations and kinetic network models.</em> J. Chem. Inf. Model., 2017, 57 (7), pp 1609–1620
DOI: 10.5281/zenodo.3822507
title: Replica exchange molecular dynamics simulation data of designed β-hairpins (implicit solvent, AMBER ff96)

description: Raw REMD simulation data (protein only) of designed β-hairpins. AMBER ff96 and implicit solvent model is used. More details can be found in this paper: Yunhui Ge, Brandon Kier, Niels H. Andersen and Vincent A. Voelz. <em>Computational and experimental evaluation of designed beta-cap hairpins using molecular simulations and kinetic network models.</em> J. Chem. Inf. Model., 2017, 57 (7), pp 1609–1620
DOI: 10.5281/zenodo.3822555
title: Constraining properties of the next nearby core-collapse supernova with multi-messenger signals: gravitational wave frequency fits

description: 1D FLASH simulations with STIR, for alpha_lambda = 1.23, 1.25, and 1.27. Run with SFHo EOS, M1 with 12 energy groups. For more information on these simulations, see Warren, Couch, O'Connor, & Morozova (arXiv:1912.03328) and Couch, Warren, & O'Connor (2020). Includes fit to the gravitational wave peak frequency versus time post-bounce, for a functional fit of the form f = A*sqrt(t) + B*t + C, where the frequency f is in Hz and the time t is in seconds. The columns are: progenitor mass [M_sun], fit coefficient A, fit coefficient B, fit coefficient C, and the R^2 of the fit.
description: This work was funded by the NSF under award number AST-1801844, the US Department of Energy, Office of Science, Office of Nuclear Physics, under award numbers DE-SC0015904 and DE-SC0017955, and the Swedish Research Council under award number 2018-04575. This work was done using computational resources provided by the Michigan State University Institute for Cyber-Enabled Research.
description: {"references": ["Warren, Couch, O'Connor, & Morozova. \"Constraining properties of the next nearby core-collapse supernova with multi-messenger signals.\" Submitted to Ap.J. arXiv:1912.03328", "Couch, Warren, & O'Connor. \"Simulating turbulence-aided neutrino-driven core-collapse supernova explosions in one dimension.\" Ap.J. 890:2 (2020). arXiv:1902.01340"]}
DOI: 10.7910/dvn/qfls5t
title: Replication Data for: Non-ignorable Attrition in Pairwise Randomized Experiments

description: In pairwise randomized experiments, what if outcomes of some units are missing? One solution is to delete missing units (the unitwise deletion estimator, UDE). If attrition is nonignorable, the UDE is biased. Scholars might employ the pairwise deletion estimator (PDE) which also deletes the pairmates of missing units. This study proves that the PDE can be biased but more efficient than the UDE; the pairwise variance estimator of the PDE is unbiased in the super-population. I argue that it is easier to interpret the PDE as a causal effect than the UDE. I also propose a new variance estimator.
DOI: 10.7910/dvn/qfls5t/pznr02
title: replication.r

description: :unav
DOI: 10.7910/dvn/qfls5t/ztgr8i
title: readme.txt

description: :unav
DOI: 10.17632/3fdpf5kc2n.1
title: Multi-region optimization model

description: This is a multi-region optimization planning model for Nigerian power sector. The model was developed in OseMOSYS and encoded in Mathprog language format. It can be solved using GNU Linear Programming Kit (GLPK)/CPLEX Optimizer.
DOI: 10.17632/86mxp9c9bf.1
title: A compact reformulation of the two-stage robust resource-constrained project scheduling problem: Complete results

description: Complete results corresponding to the research presented in the paper entitled 'A compact reformulation of the two-stage robust resource-constrained project scheduling problem', submitted to 'Computers and Operations Research' in April 2020 (Bold and Goerigk, 2020). The uncertain resource-constrained project scheduling problem (RCPSP) test instances on which these results are obtained are derived from deterministic instances in the PSPLIB (http://www.om-db.wi.tum.de/psplib/) involving 30 activities (j30). 3 robust counterparts corresponding to the delaying of (Gamma=) 3, 5 and 7 activities respectively have been generated for each of the 480 deterministic PSPLIB instances. Hence, a total of 1440 test instances have been generated. This data set contains four data files corresponding to the results of four variants of the model proposed in Bold and Goerigk (2020). These are a 'basic' model (basic_results_full.txt), and three extended models: including transitivity constraints (trans_results_full.txt), warm-start (warmstart_results_full.txt), transitivity constraints plus warm-start (warmstarttrans_results_full.txt). See Bold and Goerigk (2020) for details of these methods. Each data set reports for each instance the instance number (corresponding to the deterministic PSPLIB instance), the number of activities delayed (Gamma), the Gurobi solution status code, the best lower and upper-bound found by the solver, the gap between these two values, and the CPU run-time for that instance. Results show that the proposed model out-performs the current state-of-the-art algorithms for solving the two-stage robust resource-constrained project scheduling problem, being much quicker to solve, and reaching optimality for 50% more instances on the same benchmark set.
DOI: 10.5281/zenodo.3822116
title: Prof.

description: Table S1: Zircon U-Pb-O SIMS data (sample 101d), Table S2: Trace element composition of zircons (sample 101d).
DOI: 10.6084/m9.figshare.12290309
title: All data files and processing script of "Anhydrite-assisted hydrothermal metal transport to the ocean floor – insights from thermo-hydro-chemical modeling"

description: <b>Data</b>This directory contains all the data of simulation results, which are stored in hdf5 (XDMF) format. One can visualize the results in ParaView.<br><b>Figures.ipynb</b>This is a Jupyter-notebook file which contains all the python scripts to generate figure 2 and figure 4-10.<br><b>makemovie.py</b>This is a python script to generate the SI Movie1.<br><b>scifig</b>There are some python script to generate figures in Figures.ipynb
DOI: 10.17632/g74dpzb7g8.1
title: All data for "Osmolality as a novel mechanism explaining diet effects on the outcome of infection with a blood parasite" paper in CB

description: All data for "Osmolality as a novel mechanism explaining diet effects on the outcome of infection with a blood parasite" paper in Current Biology 2020
DOI: 10.17632/mn4nn297sj.3
title: When did the Lhasa and Qiantang Terranes “divorce”: constraints from Middle-Late Triassic alkaline trachytic lavas

description: Data accompanying "When did the Lhasa and Qiantang Terranes “divorce”: constraints from Middle-Late Triassic alkaline trachytic lavas" by Yang Song, Haifeng Li, Carl Guilmette, Ming Zheng, Douwe J.J. van Hinsbergen, Zhenyu Li, Faqiao Li. Tectonics, 2020.
DOI: 10.17632/rvvk4z87nd.3
title: Results Unified Formulation Paper Part II

description: The results for the unified formulation of a quasi-2D family of elements based on global-local superposition hypothesis are stored in this repository. The raw data is in format of .dat files and the processed data is stored in the .xlsm files for each configuration described in related published paper. The structure of the folders and name of the files are in accordance with the notation used in the related paper. The .dat files named 2D are suitable to be used in TECPLOT9 and the files named BRICK are 3D representations of the relative 2D and are suitable also for VISIT 3.1.0.
DOI: 10.17632/vrjd6vdk8b.3
title: Results Unified Formulation Paper Part I

description: The two-elements validation results for the unified formulation of a quasi-2D family of elements based on global-local superposition hypothesis are stored in this repository. The raw data is in format of .dat files and the processed data is stored in the .xlsm files for each configuration described in related published paper. The superposition results were generated using a element with parabolic interpolation for u and w in z direction, linear interpolation for u and cubic interpolation for w in x direction. The .dat files named 2D are suitable to be opened in TECPLOT9 software.
DOI: 10.6073/pasta/00cbcc20ab63feb5bb69a9109f35b697
title: McMurdo Dry Valleys LTER: Transplant Lake Integrated Connectivity Experiment (tLICE) in Taylor Valley, Antarctica, January 2018

description: The purpose of this experiment, performed as part of the McMurdo Dry Valleys Long Term Ecological Research (MCM LTER) program, was to investigate the impact of lake level rise and moat expansion on microbial community diversity and function in the East Lobe of Lake Bonney, located in Taylor Valley, Antarctica. The â€œtLICEâ€ experiment tested the following MCM5 Hypotheses: H3-Disturbance increases connectivity and accelerates shifts towards homogeneity, and H4-Decreased heterogeneity reduces community resistance and resilience. Lake water from the East Lobe of Lake Bonney was collected at depths representing maximum phytoplankton productivity (5 m, 17 m, 23 m), and transferred to dialysis bags. The bags were then attached to PVC frames and transplanted to new locations within the lake in two experiments: 1) a moat transplant, in which 5 m communities were transplanted to the open water moat; and 2) shallow to deep transplant, in which communities from all three sampling depths were moved 3 m down the water column to mimic approximately one decade of lake level rise. Transplanted samples were incubated under these conditions for two weeks, and then frames were recovered and samples were processed for a number of measurements. This data package includes the following measurements: nutrient concentration, chlorophyll-a content, chlorophyll fluorescence, cell density, amplicon gene sequences (16S and 18S rRNA genes), and physical parameters.
DOI: 10.15161/oar.it/23654
title: Infectious disease modelling and the dynamics of the active cases - Data

description: We developed a model that tries to describe the dynamics of the spread of a disease among a population, in particular the progress of infected active cases. The model is then applied to describe Italy CoViD-19 outbreak and subsequently, we tried to predict possible scenarios.
DOI: 10.5281/zenodo.3822104
title: Admiralty Bay monitoring 2019

description: Data are described and supplemented the manuscript submitted to review to Journal of Geophysical Research: Oceans entitled: Variability and interrelation of quality parameters of surface waters in five tidewater glacier coves of King George Island, Antarctica by: Osińska, Bialik and Wójcik.
DOI: 10.5281/zenodo.3822105
title: Admiralty Bay monitoring 2019

description: Data are described and supplemented the manuscript submitted to review to Journal of Geophysical Research: Oceans entitled: Variability and interrelation of quality parameters of surface waters in five tidewater glacier coves of King George Island, Antarctica by: Osińska, Bialik and Wójcik.
DOI: 10.5523/bris.f2q4t5pqlix62sv5ntvq51yjy
title: AssenSAR Wake Detector
title: Ship Wake Detection in SAR Images via GMC Regularization

description: This code implements a method for detecting ship wakes in synthetic aperture radar (SAR) images of the sea surface. The method is based on a linear model assumption for the wakes and hence the Radon transform is employed, within an inverse problem formulation, for detecting the wakes. The cost function associated with the image formation model includes a sparsity enforcing penalty, i.e., the generalized minimax concave (GMC) function. Despite being a nonconvex function, the GMC penalty allows the overall cost function to remain convex. The proposed solution is based on a Bayesian formulation, whereby the point estimates are recovered using a maximum a posteriori (MAP) estimation.
DOI: 10.15129/c8a0433e-042a-4088-9c4b-323943f14953
title: Bayesian Hierarchical Possion Models for Mulitple Grouped Outcomes with Clustering - Simulation Study

description: Simulation study of cluster hierarchical outcomes for bhpm (Bayesian Hierarchical Possion Models for Mulitple Grouped Outcomes with Clustering) model fitting, error estimation, and outcome detection. The dataset contains 4 simulations with varying rates. Code for generating and running the simulations is supplied. Bourne shell scripts for automating the simulations on a linux platform are supplied.
DOI: 10.7910/dvn/rnpg6k/0ktj1r
title: LehmannMastersonAPSR2020_code.do

description: :unav
DOI: 10.5523/bris.3gzjg4hdyg4te2t5148ulmh5a7
title: Data associated with publication 'Mechanics of paper folded origami: a cautionary tale'

description: The underlying data and MATLAB scripts to support the publication in Mechanics Research Commuications: 'Mechanics of Paper Folded Origami: A Cautionary Tale'
DOI: 10.7910/dvn/rnpg6k/gmpkrn
title: Figure2.R

description: :unav
DOI: 10.7910/dvn/rnpg6k/hhbf8r
title: Survey questionnaires.pdf

description: :unav
DOI: 10.7910/dvn/rnpg6k/hodmg5
title: LehmannMastersonAPSR2020_data.tab

description: :unav
DOI: 10.7910/dvn/rnpg6k/iy5fnd
title: README.pdf

description: :unav
DOI: 10.7910/dvn/rnpg6k/np1wpz
title: RD_graph_quadratic.do

description: :unav
DOI: 10.7910/dvn/rnpg6k/rfllfd
title: RD_graph_linear.do

description: :unav
DOI: 10.7910/dvn/rnpg6k/ziu3x4
title: FigureA6.R

description: :unav
DOI: 10.15468/h4jkvv
title: First fossil of the extant flat wasp genus Dissomphalus Ashmead, 1893 (Hymenoptera: Bethylidae: Pristocerinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Falières, Elsa, Nel, André (2020): First fossil of the extant flat wasp genus Dissomphalus Ashmead, 1893 (Hymenoptera: Bethylidae: Pristocerinae). Zoosystema 42 (15): 207-213, DOI: 10.5252/zoosystema2020v42a15
DOI: 10.21227/5ggn-4h68
title: Pakistan Stock Exchange Datasets

description: This is a preprocessed dataset of 10 companies from Pakistan Stock Exchange.
DOI: 10.21227/pphk-zr58
title: Pakistan Stock Exchange Datasets

description: This is a preprocessed dataset of 10 companies from Pakistan Stock Exchange.
DOI: 10.6084/m9.figshare.12290309.v1
title: All data files and processing script of "Anhydrite-assisted hydrothermal metal transport to the ocean floor – insights from thermo-hydro-chemical modeling"

description: <b>Data</b>This directory contains all the data of simulation results, which are stored in hdf5 (XDMF) format. One can visualize the results in ParaView.<br><b>Figures.ipynb</b>This is a Jupyter-notebook file which contains all the python scripts to generate figure 2 and figure 4-10.<br><b>makemovie.py</b>This is a python script to generate the SI Movie1.<br><b>scifig</b>There are some python script to generate figures in Figures.ipynb