cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4gv37/1
title: Data from Prado-Junior et al. (2016) - Journal of Ecology

description: Data of above-ground biomass dynamics over a five-year period in eight seasonal tropical dry forests in Minas Gerais state, Southeastern Brazil. In each forest, 25 permanent sample plots (20 × 20 m) were established totaling one ha per site. Biomass dynamics, structural, floristic, functional and soil variables used in the biomass models are given. AGBi = stand biomass, AGBnet = net biomass change, AGBsurv = biomass growth of surviving trees, AGBmort = biomass mortality, AGBrecr = biomass recruitment, NI = tree-density (ha-1), CWM = community weighed mean, WD = wood density, Dmax = maximum stem diameter, SLA = specific leaf area, Dec = deciduousness, S = rarefied species richness, H’ = Shannon-Wiener index, J’ = Pielou’s index, Fric = functional richness, Feve = functional evenness, Fdiv = functional divergence, P = phosphorous, K = potassium, Ca = calcium, Mg = magnesium, Al = aluminum, CEC = cation exchange capacity.
DOI: 10.5061/dryad.4jv4s/1
title: cryopreservation EPSR folder

description: This is the entire EPSR folder for the data and simulations and analysis shown in this paper.
DOI: 10.5061/dryad.4k7c5/1
title: Eight files for eight analyses

description: There are 8 sheets in this excel file, one for each analysis performed. The ReadMe file details the variables.
DOI: 10.5061/dryad.53mv1/48
title: S2-Figure3H_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 3H
DOI: 10.5061/dryad.53mv1/50
title: S2-Figure4B_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 4B
DOI: 10.5061/dryad.53mv1/51
title: S2-Figure4C_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 4C
DOI: 10.5061/dryad.53mv1/52
title: S2-Figure4D_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 4D
DOI: 10.5061/dryad.53mv1/53
title: S2-Figure4E_0_mnpw

description: Euler/X concept taxonomy alignment toolkit data filesSee https://github.com/EulerProjectAuthors: M. Andrew Jansen & Nico M. FranzArticle: Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignmentsTo appear in ZooKeys, 2015. doi: 10.3897/zookeys.@@.6001Supplementary Material II - Alignment VisualizationFigure 4E
DOI: 10.5061/dryad.5b64r.1
title: Data from: Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)
DOI: 10.5061/dryad.5b64r.2/1.2
title: RAD seqeunces and genotypes

description: Raw genotype data for all identified catalog entries. Each line gives genotypes for a single catalog entry, columns are individuals. The first 2 columns are metadata for each catalog entry and a header line is present. This is a zipped tab-delimited text file and line endings are in Unix format: "\n". This file is generated by Stacks v1.05 (Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. and Cresko, W. A. (2013), Stacks: an analysis tool set for population genomics. Mol Ecol, 22: 3124–3140. doi:10.1111/mec.12354)
DOI: 10.5061/dryad.5b64r.2/2.2
title: primer-based (taqMan) genotypes

description: This file contains genotype data generated by primer- based genotyping. Each row is an individual, labeled in the first column.  Each column past the first gives genotypes for a specific locus, labeled in the first row.  Only haploid offspring are included and they are expected to be homozygous.  Alleles are specified by 'X' and 'Y', uncalled genoyypes are specified with 'no call' or 'invalid'.  This is a text file with Windows line endings: "\r\n"
DOI: 10.5061/dryad.5b64r.2/3.2
title: Catalog sequences

description: This is a zipped tab-delimited text file and line endings are in Unix format: "\n". This file is generated by Stacks v1.05 (Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. and Cresko, W. A. (2013), Stacks: an analysis tool set for population genomics. Mol Ecol, 22: 3124–3140. doi:10.1111/mec.12354)
DOI: 10.5061/dryad.5kv72/2
title: Fig. S1. Map of SEM stub showing the location of holotype of Microlepidopalla mira Porter and Riedman

description: A high resolution tiff file showing an image of fossils on an SEM stub; the location of the holotype of Microlepidopalla mira Porter and Riedman is indicated in white text. (Other white text indicates the location of other specimens photographed by the authors.)
DOI: 10.5061/dryad.5v2t8/1
title: Isometric Pull Session Records

description: Session records, including individual trial results and force signal snippets, for all isometric pull task training and testing sessions. Data files can be read into MATLAB using the provided *.m file.
DOI: 10.5061/dryad.5v2t8/2
title: Pasta Matrix Session Records

description: Grid records for every training and testing pasta matrix session. Each pixel of the *.png image files represents the location of one pasta strand. Pasta strands broken during each session are indicated with a white pixel, unbroken strands are indicated with a black pixel. The reaching slot location is relative to the top left corner of each image. Subject identifier and timestamp are contained in each filename.
DOI: 10.5061/dryad.5v2t8/3
title: Skilled Reaching Session Records

description: Spreadsheet showing session records, including total trial counts, hit counts, miss counts, and attempts counts, as scored by a trained rater, for every skilled reaching testing session.
DOI: 10.5061/dryad.78386/1
title: phenotypes_finland

description: Each line contains: population, clone and replicate ID; whether the data were collected to measure ephippia or male production (Trait-measured); the habitat type; the different phenotypes. Data transformations (e.g. square-root) were done directly during the analysis in R.
DOI: 10.5061/dryad.7v1f8/1
title: Uribe-Convers_and_Tank_AJB_2015

description: The data included in this directory was used for every analysis in the publication "Shifts in diversification rates linked to biogeographic movement into new areas, an example of disparate continental distributions and a recent radiation in the Andes" by Simon Uribe-Convers and David C. Tank (University of Idaho), as part of Uribe-Convers' dissertation.
DOI: 10.5061/dryad.8d6fg/1
title: KadaLion_2015_JEB_scripts

description: Mathematica and R script to run the simulations and re-draw figures from the manuscript "Superinfection and the coevolution of parasite virulence and host recovery''.
DOI: 10.5061/dryad.8p6m0/3
title: SuplementaryFiles

description: Supplementary figures and tables
DOI: 10.5061/dryad.8p6m0/4
title: HuangEtKnowles2015SysBioDynastesData

description: (1) Aligned sequence data in Nexus format. (2) Beetle images from collected specimens and book scans. (3) input molecular and phenotypic data for bpp and ibpp analyses. (4) Collection records. (5) *BEAST species trees
DOI: 10.5061/dryad.ck32j/1
title: Combined CA Monarchs SIA 2015-09-11

description: Morphological wing measurements and isotope data for collected monarch butterflies. Includes basic demography, localities and Ophryocystis elektroscirrha checks. Also includes preliminary (unpublished) spectrophotometric data - these data are incomplete and should not be used.
DOI: 10.5061/dryad.ct140/1
title: original alignment for ITS
DOI: 10.5061/dryad.ct140/2
title: original alignment for MCM7
DOI: 10.5061/dryad.ct140/3
title: original alignment for ITS+MCM7
DOI: 10.5061/dryad.ct140/4
title: input dataset for ITS ML analysis
DOI: 10.5061/dryad.ct140/5
title: input dataset for MCM7 ML analysis
DOI: 10.5061/dryad.dk564/1
title: Data Tabacaru et al JAPPL 2015

description: Proportion of lodgepole pine trees attacked by mountain pine beetle, number of attacks per tree, and tree death rates across three sites. Phloem nitrogen, moisture, and thickness across two years.
DOI: 10.5061/dryad.f8j71/1
title: RAD fragments and SNPs

description: A list of 41 bp fragments names and in which base of the fragment we genotyped the SNP
DOI: 10.5061/dryad.f8j71/2
title: HP genotype

description: The genotype of the first cross (HP) in LINKAGE data format
DOI: 10.5061/dryad.f8j71/3
title: HP SNPs IDs

description: The P. pungitius SNP IDs for the first cross (HP) corresponding, and in the exact same order, as the HP genotype data file.
DOI: 10.5061/dryad.f8j71/4
title: HR-snps

description: The genotype of the second cross (HR) in Linkage format.
DOI: 10.5061/dryad.f8j71/5
title: HR SNP IDs

description: SNP IDS corresponding to the first cross (HR) genotype file.  The IDs are in the exact same order as in the genotype file.
DOI: 10.5061/dryad.j09v3/1
title: Growth, light and trait data

description: Relative growth rate, light availability and leaf trait data for saplings growing in subtropical rainforest sites in Australia.
DOI: 10.5061/dryad.jr77n.1
title: Data from: Bet-hedging as a mechanism for the evolution of polyandry, revisited
DOI: 10.5061/dryad.jr77n.2/2.2
title: intrinsic male quality scenario (binomial quality distribution)

description: Fujitsu F-BASIC for Windows V6.0 program source code for the intrinsic male quality scenario (binomial quality distribution)
DOI: 10.5061/dryad.jr77n.2/3.2
title: intrinsic male quality scenario (continuous quality distribution with SD0.167)

description: Fujitsu F-BASIC for Windows V6.0 program source code for the intrinsic male quality scenario (continuous quality distribution)
DOI: 10.5061/dryad.jr77n.2/4.2
title: gametophytic genetic compatibility scenario

description: Fujitsu F-BASIC for Windows V6.0 program source code for the genetic incompatibility scenario (gametophytic incompatibility)
DOI: 10.5061/dryad.jr77n.2/5.2
title: Instruction manual for simulation programs

description: Instruction manual for 3 program files
DOI: 10.5061/dryad.nt722/1
title: SNP calls for RAD data grouped by location, vcf format

description: SNP calls for filtered and assembled RAD data grouped by location (Belize, Honduras, Panama), vcf format.
DOI: 10.5061/dryad.nt722/2
title: SNP calls for RAD data grouped by samples, vcf format

description: SNP calls for filtered and assembled RAD data grouped by samples (species/location, 9 samples), vcf format.
DOI: 10.5061/dryad.nt722/4
title: Filetered and assembled RAD data

description: Filtered and assembled RAD data for the assembly with m=3 and M=2
DOI: 10.5061/dryad.pn85t/1
title: batch_1.structure_1000-rep1

description: Subset of 1000 loci for individuals from 21 populations formatted for Structure.
DOI: 10.5061/dryad.pn85t/2
title: batch_1.structure_1000-rep2

description: Subset of 1000 loci for individuals from 21 populations formatted for Structure.
DOI: 10.5061/dryad.pn85t/3
title: batch_1.structure_1000-rep3

description: Subset of 1000 loci for individuals from 21 populations formatted for Structure.
DOI: 10.5061/dryad.tc45g/3
title: Saint Lawrence Lowlands Ecoregion

description: This is a 30m resolution binary raster of the ecoregion within which we ranked conservation priorities based on multiple habitat connectivity criteria.
DOI: 10.5061/dryad.tn20t/1
title: Encounter_ClassificationEM

description: Data used to classify the immediate spatial responses of zebras after an encounter with lions between stay and flight. Column headings: Id = id of zebras, DateTime = local date and time of the GPS fixes of zebras, DistToLion = distance between zebra and lion at the time of the encounter in m, NetDisplacement = net displacement of zebra two hours after the encounter with lion in m.
DOI: 10.5061/dryad.tn20t/2
title: Encounter_RSF

description: Data used to determine the habitat features of encounter areas and the habitat determinants of immediate response choice (stay or flight). Column headings: Id = id of zebra, DateTime = local date and time of the GPS fixes of zebras, Encounter = dependent categorical variable indicating if an encounter occurred ("Yes") or not ("No") at a given time, Encounter2 = dependent categorical variable (question 2) indicating if zebras stay ("Stay") or flee ("Flight") after encountering lions, DistWater = distance to artificial waterholes in km, Grassland = binary variable with 1 if zebra was in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Wooded Bushland = binary variable (reference category).
DOI: 10.5061/dryad.tn20t/3
title: RSF_Lions

description: Data used to asses habitat selection function of lions (RSF). Column headings: Id = id of lion, DateTime = local date and time of the GPS fixes of lions, Year = year, isNight = binary variable indicating if GPS fixes occurred at nighttime (1) or daytime (0), DistWater = distance to artificial waterhole in km, Case = binary response with 1 for GPS fixes and 0 for random locations, Grassland = binary variable with 1 if location occurred in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Wooded Bushland = binary variable (reference category).
DOI: 10.5061/dryad.tn20t/4
title: RSF_Zebras

description: Data used to asses habitat selection function of zebras (RSF). Column headings: Id = id of zebra, DateTime = local date and time of the GPS fixes of zebras, Year = year, isNight = binary variable indicating if GPS fixes occurred at nighttime (1) or daytime (0), DistWater = distance to artificial waterhole in km, Case = binary response with 1 for GPS fixes and 0 for random locations, Grassland = binary variable with 1 if location occurred in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Wooded Bushland = binary variable (reference category).
DOI: 10.5061/dryad.tn20t/5
title: SSF_DelayedFlight_Immediately

description: Data used to asses the step selection function (SSF) of zebras using the delayed-flight tactic immediately after an encounter with lions (question 4). Column headings: id = id of zebra, FakeTime = 2-case, case = binary variable with 1 for an observed step and 0 for a random step, strata = id of the stratum where an observed step is paired with 10 random steps, TacticCont = categorical variable indicating if the step occurred after an encounter ("Tactic") or during the proactive phase ("Control"), Grassland = binary variable with 1 if the step ended in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Spline1-4 = spline variable for step length in m, StepLength = length of the step in m.
DOI: 10.5061/dryad.1j002/1
title: IbuttonDataHourly
DOI: 10.5061/dryad.1q34p/1
title: Bulbophyllum occultum, AFLP-matrix
DOI: 10.5061/dryad.1tf47/1
title: Supplemental File 1 - List of turbidite Localities

description: Comprehensive list of turbidite localities worldwide.
DOI: 10.5061/dryad.1tf47/2
title: Supplemental File 4 - Data tables of analyses results

description: Data results from all analyses run for the article.
DOI: 10.5061/dryad.1tf47/6
title: Supplemental File 2 - Sample Images

description: A comprehensive list of all samples used in the analyses, including photographs, if available, line tracings, and deposit information.
DOI: 10.5061/dryad.1tf47/7
title: Supplemental File 3 - Sample Locality Maps

description: Paleogeographic maps showing sample localities during their appropriate time periods.
DOI: 10.5061/dryad.2c760/1
title: Pictus Swimming Kinematics

description: Excel file containing pectoral fin and tail angles relative to the body axis measured across non-consecutive bouts of free rhythmic swimming. For each fish (n = 5) and trial (5 trials per fish), angles were measured at each eighth of the tail-beat cycle, including the beginning and end of the cycle, for a total of nine time points per cycle. Data on the cycle duration for each trial analyzed are also included.
DOI: 10.5061/dryad.2c760/2
title: ppBend_Data

description: Excel file containing pectoral fin ray afferent responses to fin ray bending. Fin rays were exposed to a series of step-and-hold (1.2, 1.8, 2.4, 3.0, and 3.6 mm) and ramp-and-hold (0.8, 1.2, 2.4, 4.8, 9.6 mm/s; final displacement fixed at 2.4mm) bending stimuli. The hold period during fin ray bending trials was 5s. A burst of action potentials was classified as three or more spikes occurring within 50ms of each other. Each stimulus was divided into several temporal segments (i.e. bins) for analysis. Stimulus segment timing for step-and-hold trials: Prestart (0.5s prestimulus baseline), Start (stimulus onset to 1s afterwards), Hold (1.0s to 4.5s), and End (stimulus offset to 1s afterwards). Stimulus segment timing for ramp-and-hold trials: Prestart (0.5s prestimulus baseline), Start (duration of start ramp), Poststart (1s post-start ramp interval), Hold (1s hold interval), End (duration of the end ramp), and Postend (1s post-end ramp interval). Characteristics associated with a burst of action potentials during step-and-hold trials were analyzed only during Start and End stimulus segments. Bursts were not always recorded.
DOI: 10.5061/dryad.2c760/3
title: ppPush_Data

description: Excel file containing pectoral fin ray afferent responses to pressure. Fin rays were exposed to a series of step-and-hold (0.12, 0.3, 0.6, 1.2, 1.8mm) and ramp-and-hold (1.2, 2.4, 12, 24, 48mm/sec; final amplitude of 1.2mm) pressure stimuli. The hold period during fin ray bending trials was 3s. A burst of action potentials was classified as three or more spikes occurring within 50ms of each other. Each stimulus was divided into several temporal segments (i.e. bins) for analysis. Stimulus segment timing for step-and-hold trials Prestart (0.5s prestimulus baseline), Start (stimulus onset to 1s afterwards), Hold (1.0s to 2.0s), and End (stimulus offset to 1s afterwards). Stimulus segment timing for ramp-and-hold trials: Prestart (0.5s prestimulus baseline), Start (duration of start ramp), Poststart (1s post-start ramp interval), Hold (1s hold interval), End (duration of the end ramp), and Postend (1s post-end ramp interval). Characteristics associated with a burst of action potentials during step-and-hold trials were recorded only during Start and End stimulus segments. Bursts were not always recorded.
DOI: 10.5061/dryad.2c760/4
title: ppBrush_Data

description: Excel file containing pectoral fin ray afferent responses to surface brushing. Fin rays were exposed to a series of extensions at different distances (0.6, 1.2, 2.4, 3.6, 4.8mm at 2mm/sec) and velocities (0.6, 1.2, 2.4, 3.6, 4.8mm/sec; final brushing distance held constant at 2.4mm). Each stimulus was divided into several temporal segments (i.e. bins) for analysis. Stimulus segment timing: Prestart (0.5s prestimulus baseline), Start (duration of start ramp), Poststart (1s post-start ramp interval), Hold (1s hold interval), End (duration of the end ramp), and Postend (1s post-end ramp interval).
DOI: 10.5061/dryad.2h0q3/1
title: Raw fMRI data of controls and patients

description: Raw fMRI data of 14 healthy controls (HC) and 15 chronic low back pain patients (CLBP). Subject had to perform a motor imagery (MI) task during scanning session.
DOI: 10.5061/dryad.32np3/1
title: Simulation model code

description: Matlab code used to create simulation results
DOI: 10.5061/dryad.3td7f/1
title: Suppl Materials (Raw Data)
DOI: 10.5061/dryad.50b93/1
title: ZoboGrad-GENEPOP

description: Individual genotypes of the 401 individuals at 12 microsatellite loci. This file is provided in the universal GENEPOP format. The first section corresponds to a list of the name of the loci. Then, each row represent a single individual: first column is the individual identifier and the following columns correspond to the length (concatenation of 2 x 3 digits) of the different alleles at the 12 loci (one column each). Sampling localities are separated by a empty lines.
DOI: 10.5061/dryad.50b93/2
title: ZoboGrad-Morpho

description: File summarizing the morphological data for each individual. Each line corresponds to a single individual with informations about sampling localities, ringer and all the morphological variables measured: weight (g), wing length (mm), tail length (mm), tarsus length (mm), bill length (mm), bill depth (mm) and bill width (mm).
DOI: 10.5061/dryad.5v2t8/4
title: Lesions Dates

description: Spreadsheet showing lesion dates for all subjects, for aligning pre- and post-lesion timepoints in provided data files.
DOI: 10.5061/dryad.621h4/1
title: Life-habit/functional-trait codings for the Kope and Waynesville Formation species pool

description: KWTraits.csv is a comma-separated value (.csv) format file listing the aggregate species pool for the Kope and Waynesville Formation used in empirical analyses. (The file is also included as a data file within the 'ecospace' R package.) The first three columns list taxonomic information. The remaining columns list ecospace character states (functional traits). See supplementary appendix A and Novack-Gottshall (2007) for information on characters and states. See text for explanation of how multistate characters were rescaled.
DOI: 10.5061/dryad.621h4/2
title: Two-model model-selection support data files for Kope and Waynesville Formation samples, stratigraphic section, member, and formation aggregates

description: File is in comma-separated value (.csv) format. The first five columns describe the Paleobiology Database collection identification number, scale (hand sample, stratigraphic section, etc.) of the sample, and stratigraphic/section names. Columns 6–14 list sample size (S, species richness) and values for eight disparity statistics (with NA designating when a statistic could not be calculated, because there were fewer than four unique life habits in the sample); see text for descriptions and abbreviations of statistics. The last column identifies which model has the best support among those candidates considered. The remaining columns list the classification-tree support each sample has for each candidate model considered. emp2-modelfits.csv lists model support using the classification tree trained on the 50% and 100%-strength training data sets. emp3-modelfits.csv lists model support for the tree trained on 50%, 90%, and 100% training data.