cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1992945.08fu
title: SH1992945.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.12062250.v1
title: Additional file 12 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 12. Age-up astrocyte genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.12062256
title: Additional file 13 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 13. Age-down astrocyte genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.12062256.v1
title: Additional file 13 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 13. Age-down astrocyte genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.12062271
title: Additional file 15 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 15. Cross-sectional genes in Additional file 14.
DOI: 10.6084/m9.figshare.12062271.v1
title: Additional file 15 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 15. Cross-sectional genes in Additional file 14.
DOI: 10.6084/m9.figshare.12586574
title: Additional file 10 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 10 KEGG pathway analysis of DElncRNAs in trans
DOI: 10.6084/m9.figshare.12586574.v1
title: Additional file 10 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 10 KEGG pathway analysis of DElncRNAs in trans
DOI: 10.6084/m9.figshare.12586577
title: Additional file 11 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 11 KEGG pathway analysis of DElncRNAs in cis
DOI: 10.6084/m9.figshare.12586577.v1
title: Additional file 11 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 11 KEGG pathway analysis of DElncRNAs in cis
DOI: 10.6084/m9.figshare.12586580
title: Additional file 12 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 12. ceRNA network results
DOI: 10.6084/m9.figshare.12586580.v1
title: Additional file 12 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 12. ceRNA network results
DOI: 10.6084/m9.figshare.12586583
title: Additional file 13 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 13. Primers used in qRT-PCR
DOI: 10.6084/m9.figshare.12586583.v1
title: Additional file 13 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 13. Primers used in qRT-PCR
DOI: 10.6084/m9.figshare.16780854
title: Additional file 1 of Comparison of obesity-related indices for identifying nonalcoholic fatty liver disease: a population-based cross-sectional study in China

description: Additional file 1.
DOI: 10.6084/m9.figshare.16780854.v1
title: Additional file 1 of Comparison of obesity-related indices for identifying nonalcoholic fatty liver disease: a population-based cross-sectional study in China

description: Additional file 1.
DOI: 10.6084/m9.figshare.12586586
title: Additional file 1 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 1 The results of reads mapped to the genome of Pelodiscus sinensis.
DOI: 10.6084/m9.figshare.12586586.v1
title: Additional file 1 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 1 The results of reads mapped to the genome of Pelodiscus sinensis.
DOI: 10.6084/m9.figshare.12062301
title: Additional file 1 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 1. The weighting formula of H-score.
DOI: 10.6084/m9.figshare.12062301.v1
title: Additional file 1 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 1. The weighting formula of H-score.
DOI: 10.6084/m9.figshare.12586589
title: Additional file 2 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 2. The differentially expressed miRNAs between ovaries and testes
DOI: 10.6084/m9.figshare.12586589.v1
title: Additional file 2 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 2. The differentially expressed miRNAs between ovaries and testes
DOI: 10.6084/m9.figshare.12062304
title: Additional file 2 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 2. Primer list.
DOI: 10.6084/m9.figshare.12062304.v1
title: Additional file 2 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 2. Primer list.
DOI: 10.6084/m9.figshare.12586592
title: Additional file 3 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 3. The predicted families of DEmiRNAs
DOI: 10.6084/m9.figshare.12586592.v1
title: Additional file 3 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 3. The predicted families of DEmiRNAs
DOI: 10.6084/m9.figshare.12586598
title: Additional file 5 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 5. The DElncRNAs between ovaries and testes
DOI: 10.6084/m9.figshare.12586598.v1
title: Additional file 5 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 5. The DElncRNAs between ovaries and testes
DOI: 10.6084/m9.figshare.12062316
title: Additional file 4 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 4. The percentage of microglia and astrocytes at five time points.
DOI: 10.6084/m9.figshare.12062316.v1
title: Additional file 4 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 4. The percentage of microglia and astrocytes at five time points.
DOI: 10.6084/m9.figshare.12586610
title: Additional file 9 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 9. KEGG pathway analysis of DEmiRNAs
DOI: 10.6084/m9.figshare.12586610.v1
title: Additional file 9 of Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis

description: Additional file 9. KEGG pathway analysis of DEmiRNAs
DOI: 10.6084/m9.figshare.19926645
title: Baseline predictors of short-term visual outcomes after intravitreal conbercept injection for neovascular age-related macular degeneration

description: ABSTRACT Purpose: Neovascular age-related macular degeneration is the leading cause of vision loss in the elderly. We aimed to identify baseline predictors of visual prognosis after intravitreal conbercept injection for neovascular age-related macular degeneration. Methods: We conducted a retrospective review of 58 patients with neovascular age-related macular degeneration who were treated with intravitreal injections of conbercept 0.5 mg in routine clinical practice. Basic information such as age, sex, intraocular pressure, and disease course was collected. Best-corrected visual acuity, mean retinal sensitivity, and optical coherence tomography findings were recorded at baseline and 6 months after treatment. Logistic regression analysis was used to identify independent predictors of best-corrected visual acuity at 6 months after treatment. Results: After the 6-month treatment, the mean best-corrected visual acuity improved from 1.10 ± 0.42 logarithm of the minimum angle of resolution (logMAR) to 0.41 ± 0.18 logMAR, the mean retinal sensitivity increased from 5.13 ± 0.86 dB to 7.32 ± 1.21 dB, the mean central retinal thickness decreased from 440.38 ± 61.05 μm to 260.01 ± 24.86 μm, and the total number of hyperreflective dots and the number of hyperreflective dots in each retina layer were significantly reduced as compared with those before treatment (all p&lt;0.05). Twenty-two patients showed improved vision, and 36 had unimproved vision. Multivariate analyses revealed that the number of subretinal hyperreflective dots, the state of external limiting membrane, baseline best-corrected visual acuity, and age were independent predictors of best-corrected visual acuity (all p&lt;0.05). Conclusion: Poor recovery of patients after intravitreal conbercept injection may be related to the number of subretinal hyperreflective dots, the state of external limiting membrane, baseline best-corrected visual acuity, and age, which may be used as predictors of short-term visual outcomes and should be fully evaluated before operation.
DOI: 10.6084/m9.figshare.19926645.v1
title: Baseline predictors of short-term visual outcomes after intravitreal conbercept injection for neovascular age-related macular degeneration

description: ABSTRACT Purpose: Neovascular age-related macular degeneration is the leading cause of vision loss in the elderly. We aimed to identify baseline predictors of visual prognosis after intravitreal conbercept injection for neovascular age-related macular degeneration. Methods: We conducted a retrospective review of 58 patients with neovascular age-related macular degeneration who were treated with intravitreal injections of conbercept 0.5 mg in routine clinical practice. Basic information such as age, sex, intraocular pressure, and disease course was collected. Best-corrected visual acuity, mean retinal sensitivity, and optical coherence tomography findings were recorded at baseline and 6 months after treatment. Logistic regression analysis was used to identify independent predictors of best-corrected visual acuity at 6 months after treatment. Results: After the 6-month treatment, the mean best-corrected visual acuity improved from 1.10 ± 0.42 logarithm of the minimum angle of resolution (logMAR) to 0.41 ± 0.18 logMAR, the mean retinal sensitivity increased from 5.13 ± 0.86 dB to 7.32 ± 1.21 dB, the mean central retinal thickness decreased from 440.38 ± 61.05 μm to 260.01 ± 24.86 μm, and the total number of hyperreflective dots and the number of hyperreflective dots in each retina layer were significantly reduced as compared with those before treatment (all p&lt;0.05). Twenty-two patients showed improved vision, and 36 had unimproved vision. Multivariate analyses revealed that the number of subretinal hyperreflective dots, the state of external limiting membrane, baseline best-corrected visual acuity, and age were independent predictors of best-corrected visual acuity (all p&lt;0.05). Conclusion: Poor recovery of patients after intravitreal conbercept injection may be related to the number of subretinal hyperreflective dots, the state of external limiting membrane, baseline best-corrected visual acuity, and age, which may be used as predictors of short-term visual outcomes and should be fully evaluated before operation.
DOI: 10.6084/m9.figshare.12062334
title: Additional file 7 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 7. GO and KEGG annotate DEGs between 2mo WT microglia and aging WT microglia (4mo, 6mo, 9mo, and 12mo).
DOI: 10.6084/m9.figshare.12062334.v1
title: Additional file 7 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 7. GO and KEGG annotate DEGs between 2mo WT microglia and aging WT microglia (4mo, 6mo, 9mo, and 12mo).
DOI: 10.6084/m9.figshare.12062340
title: Additional file 8 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 8. Age-up microglia genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.12062340.v1
title: Additional file 8 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 8. Age-up microglia genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.12062346
title: Additional file 9 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 9. Age-down microglia genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.12062346.v1
title: Additional file 9 of Transcriptomic profiling of microglia and astrocytes throughout aging

description: Additional file 9. Age-down microglia genes list with fold change and p-values.
DOI: 10.6084/m9.figshare.16780889
title: Additional file 6 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 6:. FastQTL eQTL mapping results for vehicle-treated AECs (FDR&lt; 0.05).
DOI: 10.6084/m9.figshare.12586651
title: Additional file 11 of Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)

description: Additional file 11: Table S4. Summaries of the differentially expressed transcription factors.
DOI: 10.6084/m9.figshare.12586651.v1
title: Additional file 11 of Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)

description: Additional file 11: Table S4. Summaries of the differentially expressed transcription factors.
DOI: 10.6084/m9.figshare.16780889.v1
title: Additional file 6 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 6:. FastQTL eQTL mapping results for vehicle-treated AECs (FDR&lt; 0.05).
DOI: 10.6084/m9.figshare.16780874
title: Additional file 2 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 2: Gene expression covariate correlation matrix of correlation coefficients (gx correlation), p-values (gx pval), and correlation tests (gx test).
DOI: 10.6084/m9.figshare.12586654
title: Additional file 12 of Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)

description: Additional file 12: Table S5. Summaries of the differentially expressed hormone unigenes.
DOI: 10.6084/m9.figshare.12586654.v1
title: Additional file 12 of Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)

description: Additional file 12: Table S5. Summaries of the differentially expressed hormone unigenes.
DOI: 10.6084/m9.figshare.16780853
title: Additional file 10 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 10: Tables showing enrichment and colocalization results from this study. Table S1: Interaction model results for genotype x atopy and genotype x steroid use for eQTLs and meQTLs. Table S2: Enrichment estimates of eQTLs for TAGC asthma GWAS SNPs from six tissues. No P-values were significant after FDR correction. Table S3: Enrichment estimates of eQTLs for adult onset asthma GWAS SNPs from six tissues. No P-values were significant after FDR correction. Table S4: moloc results for molecular QTL-GWAS pairs and triplets. Table S5: Asthma GWAS risk allele effects on gene expression and DNA methylation.
DOI: 10.6084/m9.figshare.16780874.v1
title: Additional file 2 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 2: Gene expression covariate correlation matrix of correlation coefficients (gx correlation), p-values (gx pval), and correlation tests (gx test).
DOI: 10.6084/m9.figshare.12586657
title: Additional file 13 of Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)

description: Additional file 13: Table S6. Summaries of the differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.12586657.v1
title: Additional file 13 of Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)

description: Additional file 13: Table S6. Summaries of the differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.16780877
title: Additional file 3 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 3: Gene expression PCA results for unadjusted (Gx Unadjusted) and adjusted (Gx Adjusted) data. P-values are shown for correlations for the first 10 PCs with each covariate.
DOI: 10.6084/m9.figshare.16780853.v1
title: Additional file 10 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 10: Tables showing enrichment and colocalization results from this study. Table S1: Interaction model results for genotype x atopy and genotype x steroid use for eQTLs and meQTLs. Table S2: Enrichment estimates of eQTLs for TAGC asthma GWAS SNPs from six tissues. No P-values were significant after FDR correction. Table S3: Enrichment estimates of eQTLs for adult onset asthma GWAS SNPs from six tissues. No P-values were significant after FDR correction. Table S4: moloc results for molecular QTL-GWAS pairs and triplets. Table S5: Asthma GWAS risk allele effects on gene expression and DNA methylation.
DOI: 10.6084/m9.figshare.16780877.v1
title: Additional file 3 of Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus

description: Additional file 3: Gene expression PCA results for unadjusted (Gx Unadjusted) and adjusted (Gx Adjusted) data. P-values are shown for correlations for the first 10 PCs with each covariate.
DOI: 10.15468/dl.2amtwb
title: Occurrence Download

description: A dataset containing 1079 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Diabrotica barberi R.F.Smith & Lawrence, 1967",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 1079 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085471-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j7b778
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Sicus abdominalis Kröber, 1915",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085472-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfn44y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Palaina rubella (R.H.Beddome, 1889))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085473-240626123714530/datasets/export for details.