cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1381404.10fu
title: SH1381404.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1381409.10fu
title: SH1381409.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18668846
title: River biofilm bacteria as sentinels of national-scale freshwater ecosystems

description: Supplementary data associated with 'River biofilm bacteria as sentinels of national-scale freshwater ecosystems'. Preprint is available at: https://www.biorxiv.org/content/10.1101/2025.11.03.686311v1.

R scripts for generation of these files and visualisation are available on GitHub at: https://github.com/amycthorpe/biofilm_16S_analysis.

Raw reads have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB90117



ASV_tax_16S_processed.csv - ASV taxonomy (assigned according to the SILVA v138.2 reference database)

ASV_counts_16S_processed.csv - ASV abundances per sample

water_chem.csv - water chemistry associated with each sample [source: https://environment.data.gov.uk/water-quality/view/landing]



values are means calculated for each variable across a 3-month period prior to sampling

alkalinity to pH 4.5 as CaCO3 (mg L-1)

ammonia unionised as N (mg L-1)

ammonical nitrogen as N (mg L-1)

dissolved organic carbon (mg L-1)

chloride ion (mg L-1)

conductivity at 25 °C

nitrate as N (mg L-1)

nitrite as N (mg L-1)

total oxidised nitrogen (mg L-1)

reactive orthophosphate (mg L-1)

dissolved oxygen (mg L-1)

dissolved oxygen (% saturation)

total phosphorus (mg L-1)

reactive silica as SiO2 (mg L-1)

water temperature (°C)

pH



diversity.csv - alpha diversity and richness metrics per sample

core.csv - core community at each detection threshold and their prevalence across samples (%)

envfit.csv - results from vegan envfit() function for NMDS analysis of ASV relative abundance and water chemistry

correlations.csv - results from spearman correlation analysis between ASV relative abundance and water chemistry

modules.csv - co-occurrence network module assignment

titan_all.csv - output from TITAN for alkalinity, DO, nitrate-N, and temperature.

functions_ASV.csv - predicted functions according to the FAPROTAX database.
DOI: 10.11588/duerer.online.69943c0fc8468
title: Das tanzende Bauernpaar, 195204
DOI: 10.5281/zenodo.18668727
title: Spring Meroplankton Abundance of Saltfjord from 2014-2024

description: Spring meroplankton abundance data for Saltfjord (67°16′ N, 14°38′ E, sub-Arctic) from 2014-2024. Published in the Journal of Plankton Research as Amieva Mau et al. (2026). Interannual variability inthe spring meroplankton community of a sub-Arctic fjord. doi: 10.1093/plankt/fbag012.

Feel free to contact me (mauamievasofia_@hotmail.com) if you have any quuestions.
DOI: 10.5281/zenodo.17515762
title: River biofilm bacteria as sentinels of national-scale freshwater ecosystems

description: Supplementary data associated with 'River biofilm bacteria as sentinels of national-scale freshwater ecosystems'. Preprint is available at: https://www.biorxiv.org/content/10.1101/2025.11.03.686311v1.

R scripts for generation of these files and visualisation are available on GitHub at: https://github.com/amycthorpe/biofilm_16S_analysis.

Raw reads have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB90117



ASV_tax_16S_processed.csv - ASV taxonomy (assigned according to the SILVA v138.2 reference database)

ASV_counts_16S_processed.csv - ASV abundances per sample

water_chem.csv - water chemistry associated with each sample [source: https://environment.data.gov.uk/water-quality/view/landing]



values are means calculated for each variable across a 3-month period prior to sampling

alkalinity to pH 4.5 as CaCO3 (mg L-1)

ammonia unionised as N (mg L-1)

ammonical nitrogen as N (mg L-1)

dissolved organic carbon (mg L-1)

chloride ion (mg L-1)

conductivity at 25 °C

nitrate as N (mg L-1)

nitrite as N (mg L-1)

total oxidised nitrogen (mg L-1)

reactive orthophosphate (mg L-1)

dissolved oxygen (mg L-1)

dissolved oxygen (% saturation)

total phosphorus (mg L-1)

reactive silica as SiO2 (mg L-1)

water temperature (°C)

pH



diversity.csv - alpha diversity and richness metrics per sample

core.csv - core community at each detection threshold and their prevalence across samples (%)

envfit.csv - results from vegan envfit() function for NMDS analysis of ASV relative abundance and water chemistry

correlations.csv - results from spearman correlation analysis between ASV relative abundance and water chemistry

modules.csv - co-occurrence network module assignment

titan_all.csv - output from TITAN for alkalinity, DO, nitrate-N, and temperature.

functions_ASV.csv - predicted functions according to the FAPROTAX database.
DOI: 10.15468/dl.q3mkak
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orconectes limosus",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017868-250711103210423/datasets/export for details.
DOI: 10.5281/zenodo.8210551
title: Whole body gait kinematics in patients with bilateral and chronic unilateral vestibulopathy

description: This dataset contains whole body kinematics and 3D ground reaction forces and moments from 30 subjects (10 with bilateral vestibulopathy, 10 with unilateral vestibulopathy, and 10 healthy subjects) during gait at three different walking speed: slow, comfortable, and fast. Three repetitions of these gait were performed by each subject. They were instrumented with 35 reflective placed on the whole body according to the Convention Gait Model 1.0. A 12-camera motion capture system (Oqus 7+, Qualisys, Göteborg, Sweden), set at a 100 Hz sampling frequency, was used to track cutaneous reflective markers. The marker trajectories were labeled using Qualisys Tracking Manager software (QTM 2019.3, Qualisys, Göteborg, Sweden) and exported in the C3D file format. Three force plates sampled at 1000 Hz (AMTI Accugait, Watertown, MA, USA) were used to record 3D ground reaction forces and moments. Results of gait standard deviation (GaitSD) and anchoring index (AI), as well as the kinematics data, are included in this dataset in csv file format.
DOI: 10.5281/zenodo.8210552
title: Whole body gait kinematics in patients with bilateral and chronic unilateral vestibulopathy

description: This dataset contains whole body kinematics and 3D ground reaction forces and moments from 30 subjects (10 with bilateral vestibulopathy, 10 with unilateral vestibulopathy, and 10 healthy subjects) during gait at three different walking speed: slow, comfortable, and fast. Three repetitions of these gait were performed by each subject. They were instrumented with 35 reflective placed on the whole body according to the Convention Gait Model 1.0. A 12-camera motion capture system (Oqus 7+, Qualisys, Göteborg, Sweden), set at a 100 Hz sampling frequency, was used to track cutaneous reflective markers. The marker trajectories were labeled using Qualisys Tracking Manager software (QTM 2019.3, Qualisys, Göteborg, Sweden) and exported in the C3D file format. Three force plates sampled at 1000 Hz (AMTI Accugait, Watertown, MA, USA) were used to record 3D ground reaction forces and moments. Results of gait standard deviation (GaitSD) and anchoring index (AI), as well as the kinematics data, are included in this dataset in csv file format.
DOI: 10.15468/dl.hqybnx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orconectes limosus",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017869-250711103210423/datasets/export for details.
DOI: 10.6096/aeroclo.1813
title: AEROCLO-sA PEGASUS CCN concentration

description: Cloud Condensation Nucleus number concentration measured at the surface level at Henties Bay.<br />
<br />
Observing strategy: <br />
The CCN Concentration was mesured by "homemade" Greg Roberts CCN counter operated in the PEGASUS mobile lab. Air was taken into the instrument from one of the two custom-built high volume wind-orientable inlet of the mobile station. The CCNC counter apply sursaturation between 0.1 and 0.7 %.
DOI: 10.5517/ccdc.csd.cc2l6rrb
title: CCDC 2389782: Experimental Crystal Structure Determination

description: Related Article: Jakhongir Umaraliev, Adkham Ganiev, Ablajan Turak, Nurmirza Begmatov, Khayrulla Bobakulov, Nasrulla Abdullaev, Zhao Jiangyu, Haji Akber Aisa|2025|Phytochemistry|239|114602|doi:10.1016/j.phytochem.2025.114602
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l6rsc
title: CCDC 2389783: Experimental Crystal Structure Determination

description: Related Article: Jakhongir Umaraliev, Adkham Ganiev, Ablajan Turak, Nurmirza Begmatov, Khayrulla Bobakulov, Nasrulla Abdullaev, Zhao Jiangyu, Haji Akber Aisa|2025|Phytochemistry|239|114602|doi:10.1016/j.phytochem.2025.114602
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l6ryj
title: CCDC 2389788: Experimental Crystal Structure Determination

description: Related Article: Jakhongir Umaraliev, Adkham Ganiev, Ablajan Turak, Nurmirza Begmatov, Khayrulla Bobakulov, Nasrulla Abdullaev, Zhao Jiangyu, Haji Akber Aisa|2025|Phytochemistry|239|114602|doi:10.1016/j.phytochem.2025.114602
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m8sd3
title: CCDC 2421515: Experimental Crystal Structure Determination

description: Related Article: Meera Mori, Anjaliba Dodiya, Bhoomi Prajapati, Priyanka Mathur, Megha Chaudhari, Jayesh Sarvaiya, C. Ratna Prabha, Paritosh Shukla, Arpita Desai|2025|J.Mol.Struct.|1345|143033|doi:10.1016/j.molstruc.2025.143033
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m8sf4
title: CCDC 2421516: Experimental Crystal Structure Determination

description: Related Article: Meera Mori, Anjaliba Dodiya, Bhoomi Prajapati, Priyanka Mathur, Megha Chaudhari, Jayesh Sarvaiya, C. Ratna Prabha, Paritosh Shukla, Arpita Desai|2025|J.Mol.Struct.|1345|143033|doi:10.1016/j.molstruc.2025.143033
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m975c
title: CCDC 2421942: Experimental Crystal Structure Determination

description: Related Article: Meera Mori, Anjaliba Dodiya, Bhoomi Prajapati, Priyanka Mathur, Megha Chaudhari, Jayesh Sarvaiya, C. Ratna Prabha, Paritosh Shukla, Arpita Desai|2025|J.Mol.Struct.|1345|143033|doi:10.1016/j.molstruc.2025.143033
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5284/1134878
title: Land at Dytchleys

description: null
DOI: 10.15468/dl.hsnjfp
title: Occurrence Download

description: A dataset containing 22636 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine pentaphyllos"
 ]
}

 The dataset includes 22636 records from 296 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017867-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77uj3c
title: Occurrence Download

description: A dataset containing 755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((144.80431 41.037,137.38391 41.20565,128.38949 31.59287,122.48693 33.61661,122.20585 37.38302,115.01032 37.60788,101.79978 33.89768,94.88533 24.39734,105.84727 12.03004,128.67058 18.21368,149.58258 30.97449,144.80431 41.037))",
 "TaxonKey is Firmiana simplex"
 ]
}

 The dataset includes 755 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017872-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jba9x8
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllium elegans"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017873-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ey6yce
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Orconectes limosus",
 "Country is Lithuania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017870-250711103210423/datasets/export for details.
DOI: 10.15468/dl.aaynb3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Grevillea robusta",
 "Country is Burundi",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017874-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb9qvy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis invicta",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017875-250711103210423/datasets/export for details.
DOI: 10.25800/tb9n-ty83
title: DSA-110 Data for Candidate Fast Radio Burst 221018aaaj

description: Data associated with DSA-110 candidate transient. This repository contains four filterbank files containing the Stokes parameter dynamic spectra for this FRB. Each filterbank is saved at maximum native resolution (32.7 microseconds, 30.4 kHz) and contains ~0.669696 seconds (20480 samples) around the burst across the full DSA-110 187 MHz (6144 channels) frequency band. The Stokes parameters have been calibrated using observations of the 3C48 and 3C286 Very Large Array (VLA) calibrators as described in Sherman et al., 2024 (https://doi.org/10.3847/1538-4357/ad275e ; see Appendices D and E). Note that there may be minute differences between the data contained here and that reported in Sherman et al., 2024 due to being calibrated at maximum time resolution, rather than being downsampled first.
DOI: 10.15468/dl.69wjqu
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Setophaga petechia)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 175 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017876-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15766756
title: Turkronicles: Diachronic Resources for the Fast Evolving Turkish Language

description: Turkronicles

This repository presents a compilation of the publications of the Official Gazette of Türkiye (Resmi Gazete) and the records of the Grand National Assembly of Türkiye, from 1921 to 2024. Researchers can trace linguistic variation, semantic change, and stylistic trends from 1921 to 2024 in Turkish using the following resources:

- Static embeddings- Contextual embeddings- N‑gram frequency lists- Raw text corpora

Each resource is stored in a dedicated top‑level directory:

/static_embeddings   /contextual_embeddings/ngrams              /corpus              

STATIC EMBEDDINGS 

The available static embeddings are as follows:-CBOW-PPMI -SVD  

Note: PPMI and SVD embeddings are stored as NumPy matrices whose rows correspond to word indices. Use the files under /static_embeddings/Vocabulary to map indices back to surface forms. In addition, CBOW embeddings are gensim Word2Vec models.

CONTEXTUAL EMBEDDINGS

Each decade checkpoint under /contextual_embeddings is a Hugging Face DistilBERT model fine‑tuned on that decade’s corpus.

N‑GRAM FREQUENCY LISTS

n-grams (1-,2-,3-,4-, and 5-gram) are provided for each decade. Each row in the files ending with .ngram is in the following format:<n‑gram> <frequency_count>

CORPUS

The /corpus/diachronic_mix directory contains decade-separated text files in UTF-8 encoding. The /corpus/sentences_fixed folder holds post-OCR-corrected, sentence-segmented files, with one sentence per line. Note that those who want to use the post-OCR-corrected text data should give extra attention, as the OCR correction method employed in this study imposes certain limitations (see the Limitations section for details).

FILE METADATA

The file metadata are stored in the /db_meta directory. OGT.csv holds metadata for the Official Gazette of Türkiye, and RGNAT.csv holds metadata for the parliamentary records. With these metadata files, you can easily distinguish between the two text types.

If you use any part of this repository in academic work, please cite:

@misc{yazar2024turkroniclesdiachronicresourcesfast,      title={Turkronicles: Diachronic Resources for the Fast Evolving Turkish Language},       author={Togay Yazar and Mucahid Kutlu and İsa Kerem Bayırlı},      year={2024},      eprint={2405.10133},      archivePrefix={arXiv},      primaryClass={cs.CL},      url={https://arxiv.org/abs/2405.10133}, }