cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3878260_d1.v1
title: MOESM1 of Transcriptomic meta-analysis identifies gene expression characteristics in various samples of HIV-infected patients with nonprogressive disease

description: Additional file 1: Table S1A. The 20 most significantly up-regulated and 20 most significantly down-regulated genes in nonprogressors. Table S2B. The 20 most significantly up-regulated and 20 most significantly down-regulated genes in nonprogressors of CD4+ T cells. Table S3C. The 20 most significantly up-regulated and 20 most significantly down-regulated genes in nonprogressors of CD8+ T cells.
DOI: 10.6084/m9.figshare.c.3878248_d3
title: MOESM3 of Associations of two-pore domain potassium channels and triple negative breast cancer subtype in The Cancer Genome Atlas: systematic evaluation of gene expression and methylation

description: Additional file 3: Table S3. Association of CpG loci with triple negative subtype.
DOI: 10.6084/m9.figshare.c.3878248_d3.v1
title: MOESM3 of Associations of two-pore domain potassium channels and triple negative breast cancer subtype in The Cancer Genome Atlas: systematic evaluation of gene expression and methylation

description: Additional file 3: Table S3. Association of CpG loci with triple negative subtype.
DOI: 10.6084/m9.figshare.c.3878254_d1.v1
title: Additional file 1: of Integrator complex subunit 6 (INTS6) inhibits hepatocellular carcinoma growth by Wnt pathway and serve as a prognostic marker

description: Microarray data files of the differential mRNA expression in HCC. (XLS 2230 kb)
DOI: 10.6084/m9.figshare.c.3878254_d1
title: Additional file 1: of Integrator complex subunit 6 (INTS6) inhibits hepatocellular carcinoma growth by Wnt pathway and serve as a prognostic marker

description: Microarray data files of the differential mRNA expression in HCC. (XLS 2230 kb)
DOI: 10.6084/m9.figshare.c.3878248_d2
title: MOESM2 of Associations of two-pore domain potassium channels and triple negative breast cancer subtype in The Cancer Genome Atlas: systematic evaluation of gene expression and methylation

description: Additional file 2: Table S2. Distribution of K2p gene expression status for subtype outcomes by assay type.
DOI: 10.6084/m9.figshare.c.3878248_d2.v1
title: MOESM2 of Associations of two-pore domain potassium channels and triple negative breast cancer subtype in The Cancer Genome Atlas: systematic evaluation of gene expression and methylation

description: Additional file 2: Table S2. Distribution of K2p gene expression status for subtype outcomes by assay type.
DOI: 10.6084/m9.figshare.c.3877195_d6.v1
title: Additional file 6: of Developing genome-reduced Pseudomonas chlororaphis strains for the production of secondary metabolites

description: Nutrient added in each well of the Biolog PM5 plate. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3877144_d1.v1
title: Additional file 1: of A comparative study of irrigation versus no irrigation during burr hole craniostomy to treat chronic subdural hematoma

description: Raw data. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3877144_d1
title: Additional file 1: of A comparative study of irrigation versus no irrigation during burr hole craniostomy to treat chronic subdural hematoma

description: Raw data. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3877036_d12
title: Additional file 9: of The dynamic landscape of gene regulation during Bombyx mori oogenesis

description: The key factors in consensus modules between B. mori and D. melanogaster. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3877036_d12.v1
title: Additional file 9: of The dynamic landscape of gene regulation during Bombyx mori oogenesis

description: The key factors in consensus modules between B. mori and D. melanogaster. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3877036_d4
title: Additional file 1: of The dynamic landscape of gene regulation during Bombyx mori oogenesis

description: The statistics of sequencing samples. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3877033_d6.v1
title: Additional file 1: Table S1. of Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas

description: Operation table for the glycogen content assay. (XLS 24Â kb)
DOI: 10.6084/m9.figshare.c.3877033_d6
title: Additional file 1: Table S1. of Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas

description: Operation table for the glycogen content assay. (XLS 24Â kb)
DOI: 10.6084/m9.figshare.c.3877036_d3
title: Additional file 12: of The dynamic landscape of gene regulation during Bombyx mori oogenesis

description: The explanation of gene identities. (XLS 284 kb)
DOI: 10.6084/m9.figshare.c.3877033_d4
title: Additional file 13: Table S8. of Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas

description: Metabolites and genes in enriched pathways identified by an integrative analysis of the metabolome and transcriptome data. The bold names represent the gene name whereas the others are metabolite names. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3877033_d4.v1
title: Additional file 13: Table S8. of Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas

description: Metabolites and genes in enriched pathways identified by an integrative analysis of the metabolome and transcriptome data. The bold names represent the gene name whereas the others are metabolite names. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3877033_d2.v1
title: Additional file 11: Table S7. of Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas

description: KEGG pathways enriched from the transcriptome analysis. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3877033_d2
title: Additional file 11: Table S7. of Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas

description: KEGG pathways enriched from the transcriptome analysis. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3877036_d1
title: Additional file 10: of The dynamic landscape of gene regulation during Bombyx mori oogenesis

description: The quantitative PCR primers of typical marker genes. (XLS 28 kb)
DOI: 10.15468/dl.mmgdtf
title: Occurrence Download

description: A dataset containing 4306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Messor barbarus (Linnaeus, 1767)"
 ]
}

 The dataset includes 4306 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035406-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3874369_d14.v1
title: Additional file 9: Table S9. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of Indel in cancer cell line validation. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d14
title: Additional file 9: Table S9. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of Indel in cancer cell line validation. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d13.v1
title: Additional file 8: Table S8. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of SNP in cancer cell line validation. (XLS 68Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d13
title: Additional file 8: Table S8. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of SNP in cancer cell line validation. (XLS 68Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d12
title: Additional file 7: Table S7. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: Quality control results of samples detected by NGS. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d12.v1
title: Additional file 7: Table S7. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: Quality control results of samples detected by NGS. (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d11
title: Additional file 6: of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of SNP in DNA sample_pool2. (XLS 594Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d11.v1
title: Additional file 6: of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of SNP in DNA sample_pool2. (XLS 594Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d10
title: Additional file 5: Table S5. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of SNP in DNA sample_pool1. (XLS 589Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d10.v1
title: Additional file 5: Table S5. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The golden standard sites of SNP in DNA sample_pool1. (XLS 589Â kb)
DOI: 10.6084/m9.figshare.c.3874369_d9.v1
title: Additional file 4: Table S4. of High performance of targeted next generation sequencing on variance detection in clinical tumor specimens in comparison with current conventional methods

description: The gene list of targeted NGS platform. (XLSX 12Â kb)
DOI: 10.15468/dl.gqe8qd
title: Occurrence Download

description: A dataset containing 1962 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythrogenys gravivox (A.David, 1873)"
 ]
}

 The dataset includes 1962 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035407-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3873271_d1
title: Additional file 1: Table S1. of Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

description: The information for SNPs suggestively associated with feed conversion ratio. Table S2. Predicted target genes from TargetScan for gga-mir-15a. Table S3. Predicted target genes from miRDB for gga-mir-15a. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3873271_d1.v1
title: Additional file 1: Table S1. of Genome-wide association study reveals putative role of gga-miR-15a in controlling feed conversion ratio in layer chickens

description: The information for SNPs suggestively associated with feed conversion ratio. Table S2. Predicted target genes from TargetScan for gga-mir-15a. Table S3. Predicted target genes from miRDB for gga-mir-15a. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3873253_d2.v1
title: Additional file 2: Table S1. of Epidemiologic and clinical parameters of West Nile virus infections in humans: a scoping review

description: Characteristics of included studies (n=92). (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3873253_d2
title: Additional file 2: Table S1. of Epidemiologic and clinical parameters of West Nile virus infections in humans: a scoping review

description: Characteristics of included studies (n=92). (XLSX 28Â kb)
DOI: 10.6084/m9.figshare.c.3871942_d1
title: Additional file 1: of Prolonged preoperative treatment of acromegaly with Somatostatin analogs may improve surgical outcome in patients with invasive pituitary macroadenoma (Knosp grades 1â  3): a retrospective cohort study conducted at a single center

description: Preoperative medical therapy data (XLSX 682 kb)
DOI: 10.6084/m9.figshare.c.3871942_d1.v1
title: Additional file 1: of Prolonged preoperative treatment of acromegaly with Somatostatin analogs may improve surgical outcome in patients with invasive pituitary macroadenoma (Knosp grades 1â  3): a retrospective cohort study conducted at a single center

description: Preoperative medical therapy data (XLSX 682 kb)
DOI: 10.6084/m9.figshare.c.3870814_d4.v1
title: Additional file 4: Table S3. of Evaluating somatic tumor mutation detection without matched normal samples

description: List of TCGA samples used. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.c.3870814_d4
title: Additional file 4: Table S3. of Evaluating somatic tumor mutation detection without matched normal samples

description: List of TCGA samples used. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.c.3870814_d2.v1
title: Additional file 2: Table S2. of Evaluating somatic tumor mutation detection without matched normal samples

description: List of 1321 targeted genes. (XLS 83Â kb)
DOI: 10.6084/m9.figshare.c.3870814_d1.v1
title: Additional file 1: Table S1. of Evaluating somatic tumor mutation detection without matched normal samples

description: Sample counts by the site of tumor origin. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3870814_d2
title: Additional file 2: Table S2. of Evaluating somatic tumor mutation detection without matched normal samples

description: List of 1321 targeted genes. (XLS 83Â kb)
DOI: 10.6084/m9.figshare.c.3870814_d1
title: Additional file 1: Table S1. of Evaluating somatic tumor mutation detection without matched normal samples

description: Sample counts by the site of tumor origin. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3870742_d6
title: Additional file 6: of Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing

description: Table S5. Genotyping of 129 quinoa samples using 85 dimorphic InDel markers. Quinoa germplasms are represented by their serial numbers in TableÂ 1. Numbers 1 and 2 represent homozygous genotypes, 3 represents a heterozygous genotype, and 9 represents missing in the genotyping section. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3870742_d6.v1
title: Additional file 6: of Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing

description: Table S5. Genotyping of 129 quinoa samples using 85 dimorphic InDel markers. Quinoa germplasms are represented by their serial numbers in TableÂ 1. Numbers 1 and 2 represent homozygous genotypes, 3 represents a heterozygous genotype, and 9 represents missing in the genotyping section. (XLSX 47Â kb)
DOI: 10.6084/m9.figshare.c.3870706_d3.v1
title: Additional file 3: Table S2. of The lysin motif-containing proteins, Lyp1, Lyk7 and LysMe3, play important roles in chitin perception and defense against Verticillium dahliae in cotton

description: Prediction of the signal peptides, subcellular localization, and transmembrane domains of LysM genes in G. raimondii. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.c.3870706_d3
title: Additional file 3: Table S2. of The lysin motif-containing proteins, Lyp1, Lyk7 and LysMe3, play important roles in chitin perception and defense against Verticillium dahliae in cotton

description: Prediction of the signal peptides, subcellular localization, and transmembrane domains of LysM genes in G. raimondii. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.c.3870706_d1.v1
title: Additional file 1: Table S1. of The lysin motif-containing proteins, Lyp1, Lyk7 and LysMe3, play important roles in chitin perception and defense against Verticillium dahliae in cotton

description: Identification of the LysM genes in G. raimondii and their phylogenetic relationships with those in G. arboreum, G. hirsutum and G. barbadense. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3870706_d1
title: Additional file 1: Table S1. of The lysin motif-containing proteins, Lyp1, Lyk7 and LysMe3, play important roles in chitin perception and defense against Verticillium dahliae in cotton

description: Identification of the LysM genes in G. raimondii and their phylogenetic relationships with those in G. arboreum, G. hirsutum and G. barbadense. (XLS 39Â kb)
DOI: 10.6084/m9.figshare.c.3870571_d2.v1
title: Additional file 11: of Application of postoperative autotransfusion in total joint arthroplasty reduces allogeneic blood requirements: a meta-analysis of randomized controlled trials

description: Dataset. The dataset supporting the conclusions of this article. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3870571_d2
title: Additional file 11: of Application of postoperative autotransfusion in total joint arthroplasty reduces allogeneic blood requirements: a meta-analysis of randomized controlled trials

description: Dataset. The dataset supporting the conclusions of this article. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3870559_d8
title: Additional file 8: Dataset 5. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer’s disease with cerebrovascular disease

description: List of all identified citrulline sites in the soluble brain proteome of AD + CVD. (XLS 194 kb)
DOI: 10.6084/m9.figshare.c.3870559_d8.v1
title: Additional file 8: Dataset 5. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer’s disease with cerebrovascular disease

description: List of all identified citrulline sites in the soluble brain proteome of AD + CVD. (XLS 194 kb)
DOI: 10.6084/m9.figshare.c.3870559_d7.v1
title: Additional file 7: Dataset 4. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: Complete list of dementia-specific citrulline sites identified in the soluble brain proteome of AD + CVD. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.c.3870559_d7
title: Additional file 7: Dataset 4. of Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimerâ  s disease with cerebrovascular disease

description: Complete list of dementia-specific citrulline sites identified in the soluble brain proteome of AD + CVD. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.c.3870556_d2
title: Additional file 2: Tables S1 through S9.  of Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

description: Table S1. Shows the CRC-related genes compiling from four sources. Table S2. shows the CRC-related miRNAs compiling from three sources. Table S3. shows merged 3-node FFLs including TF-FFLs, miRNA-FFLs and composite-FFLs. Table S4. shows the regulation information of the CRC-specific miRNA-TF mediated regulatory network. Table S5. shows the degree distribution of all nodes in the miRNA-SNW, TF-SNW and composite-SNW. Table S6. shows the regulation information of the CRC-specific significant FFLs. Table S7. shows the degree distribution of all nodes in the CRC-specific significant FFLs. Table S8. shows the miRNA targets predicted by using TargetScan. Table S9. shows the miRNA targets predicted by using miRanda. (ZIP 62739 kb)
DOI: 10.6084/m9.figshare.c.3870556_d2.v1
title: Additional file 2: Tables S1 through S9.  of Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

description: Table S1. Shows the CRC-related genes compiling from four sources. Table S2. shows the CRC-related miRNAs compiling from three sources. Table S3. shows merged 3-node FFLs including TF-FFLs, miRNA-FFLs and composite-FFLs. Table S4. shows the regulation information of the CRC-specific miRNA-TF mediated regulatory network. Table S5. shows the degree distribution of all nodes in the miRNA-SNW, TF-SNW and composite-SNW. Table S6. shows the regulation information of the CRC-specific significant FFLs. Table S7. shows the degree distribution of all nodes in the CRC-specific significant FFLs. Table S8. shows the miRNA targets predicted by using TargetScan. Table S9. shows the miRNA targets predicted by using miRanda. (ZIP 62739 kb)
DOI: 10.6084/m9.figshare.c.3870556_d1.v1
title: Additional file 1: Figure S1. of Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

description: Shows the degree distributions of nodes in the significant FFLs. (ZIP 289 kb)
DOI: 10.6084/m9.figshare.c.3870556_d1
title: Additional file 1: Figure S1. of Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

description: Shows the degree distributions of nodes in the significant FFLs. (ZIP 289 kb)
DOI: 10.6084/m9.figshare.c.3870520_d2
title: Additional file 2: Table S1. of A split ubiquitin system to reveal topology and released peptides of membrane proteins

description: Primers used in this study. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3869122_d4.v1
title: Additional file 4: Table S6. of Sparse conserved under-methylated CpGs are associated with high-order chromatin structure

description: is an.xls file containing 9421 scUMCs detected in 31 WGBS. (XLS 1919 kb)
DOI: 10.6084/m9.figshare.c.3869122_d4
title: Additional file 4: Table S6. of Sparse conserved under-methylated CpGs are associated with high-order chromatin structure

description: is an.xls file containing 9421 scUMCs detected in 31 WGBS. (XLS 1919 kb)
DOI: 10.6084/m9.figshare.c.3869122_d3.v1
title: Additional file 3: Table S5. of Sparse conserved under-methylated CpGs are associated with high-order chromatin structure

description: is an.xls file containing all datasets (31 WGBS, 16 ChIP-seq, two RNA-seq, and two ChIA-PET) used in this study. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3869044_d5.v1
title: Additional file 5: Table S3. of Characterization of mechanisms underlying degradation of sclerotia of Sclerotinia sclerotiorum by Aspergillus aculeatus Asp-4 using a combined qRT-PCR and proteomic approach

description: Up-regulated genes vs CK. (XLS 738Â kb)
DOI: 10.6084/m9.figshare.c.3869044_d5
title: Additional file 5: Table S3. of Characterization of mechanisms underlying degradation of sclerotia of Sclerotinia sclerotiorum by Aspergillus aculeatus Asp-4 using a combined qRT-PCR and proteomic approach

description: Up-regulated genes vs CK. (XLS 738Â kb)
DOI: 10.6084/m9.figshare.c.3867817_d4
title: Additional file 4: of Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

description: Expression of putative mating and meiosis process-related genes by C. cicadae at different growth stages. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3867817_d3
title: Additional file 3: of Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

description: GO analysis of the genes up-regulated between different samples of C. cicadae. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3867817_d4.v1
title: Additional file 4: of Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

description: Expression of putative mating and meiosis process-related genes by C. cicadae at different growth stages. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3867817_d3.v1
title: Additional file 3: of Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

description: GO analysis of the genes up-regulated between different samples of C. cicadae. (XLSX 51 kb)