cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7483/opendata.cms.hykb.5v3u
title: /MuEG/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.jryl.26yk
title: /MuHad/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.5u5e.gwry
title: /MuOnia/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.v4js.pp8j
title: /MuOniaParked/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.jct8.ypcm
title: /NoBPTX/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.il9i.oum2
title: /PhotonHad/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.6e8z.9wna
title: /SingleElectron/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.u9sy.wlip
title: /SingleMu/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.ns8q.ycht
title: /SinglePhotonParked/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.lf1u.6yks
title: /TauParked/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.ru65.t3r9
title: /TauPlusX/Run2012D-22Jan2013-v1/AOD
DOI: 10.7483/opendata.cms.s56k.7pup
title: /VBF1Parked/Run2012D-22Jan2013-v1/AOD
DOI: 10.21227/fdk6-wc97
title: Hydroponic_Lifecycle_image_dataset_for_phenotyping

description: This dataset was collected with the goal of providing researchers with access to a collection of hundreds of images for efficient classification of plant attributes and multi-instance plant localisation and detection. There are two folders, i.e. Side view and Top View.Each folder includes label files and image files in the.jpg format (.txt format). Images of 30 plants grown in 5 hydroponic systems have been collected for 66 days. Thirty plants of three species (Petunia, Pansy and Calendula) were grown in a hydroponic system for the purpose of collecting and analysing images.
DOI: 10.6084/m9.figshare.21294852
title: Additional data for: Infection cycle and phylogeny of a Polinton-like virus with a virophage lifestyle infecting Phaeocystis globosa

description: The code is distributed via https://github.com/BejaLab/Gezelvirus. This repository contains the following items: <br> * phylogeny-Gezel-PLVs - alignments and phylogenetic trees for the chosen set of proteins for Gezel-like PLVs * vcontact2 - results of the vcontact2 analysis * protein-homology-and-function - homology and function for proteins from mesomimiviral, NDDVs, lavidaviruses and other virophages and PLVs based on profile-profile searches. For each protein, the file mcl_genes_60.tsv lists MCL cluster ("Cluster"), cluster identity based on matches to Pfam ("Gene_Pfam", see genes_pfam.tsv for the corresponding manually curated rules), cluster identity based manually curated list of genes ("Gene_Cluster", see genes_cluster.tsv), best hhsearch hit for the particular protein ("Hit.ID", "Hit.Description", "Probab") and the final gene assigment ("Gene"). Functional assignments were checked mainly for proteins from Gezel-like PLVs and lavidaviruses - use with care for other groups. * alphafold-capsid-proteins - alphafold models of the MCP and mCP proteins of Gezel-14T * promoter-motifs - analysis of promoters in mesomimiviruses (meme) and location of PgV-16T-like early promoter motif among PLVs associated with P. globosa (fimo) * phylogeny-with-algae - phylogenetic analyses of the MCP genes from the Gezel-like group and NCLDV-like viruses. The files include alignment of MCPs ≥ 200 residues (*.a2m), trimmed alignment of unqiue long sequences (≥ 300 residues) used for phylogenetic analysis with iqtree2 (*.a2m.trim), iqtree2 output (*.treefile, *.log). In addition, for PLV MCP, short sequences were placed on the iqtree tree by re-evaluation of the iqtree2 trees with raxml-ng (*.raxml.bestTree, *..raxml.bestModel) and epa placement (*_epa). The final trees with metadata are provided in jtree format (*.jtree).
DOI: 10.5281/zenodo.7118361
title: Behavioural hydroregulation protects against acute effects of drought in a dry-skin ectotherm

description: This dataset contains raw data and associated metadata as well as R scripts to analyze the data of our paper "Behavioural hydroregulation protects against acute effects of drought in a dry-skinned ectotherm" published in Oecologia. Abstract: During extreme climate events, behavioural thermoregulation may buffer ectotherms from thermal stress and overheating. However, heatwaves are also combined with dry spells and limited water availability, and how much individuals can behaviourally mitigate dehydration risks through microclimate selection remains largely unknown. Herein, we investigated the behavioural and physiological responses to changes in air and microhabitat humidity in a terrestrial ectotherm, the asp viper (<em>Vipera aspis</em>). We exposed individuals to a simulated heatwave together with water deprivation for 3 weeks, and manipulated air water vapour density (wet air vs. dry air) and microclimate (wet shelter vs. dry shelter) in a two-by-two factorial design. Dry air conditions led to substantial physiological dehydration and muscle wasting. Vipers exposed to dry air more often used a shelter that provided a moist micro-climate, which reduced dehydration and muscle wasting at the individual level. These results provide the first experimental evidence that active behavioural hydroregulation can mitigate specific physiological stress responses caused by a dry spell in an ectotherm. Future studies investigating organismal responses to climate change should consider moisture gradient in the habitat and integrate both hydroregulation and thermoregulation behaviours.
DOI: 10.5281/zenodo.7118362
title: Behavioural hydroregulation protects against acute effects of drought in a dry-skin ectotherm

description: This dataset contains raw data and associated metadata as well as R scripts to analyze the data of our paper "Behavioural hydroregulation protects against acute effects of drought in a dry-skinned ectotherm" published in Oecologia. Abstract: During extreme climate events, behavioural thermoregulation may buffer ectotherms from thermal stress and overheating. However, heatwaves are also combined with dry spells and limited water availability, and how much individuals can behaviourally mitigate dehydration risks through microclimate selection remains largely unknown. Herein, we investigated the behavioural and physiological responses to changes in air and microhabitat humidity in a terrestrial ectotherm, the asp viper (<em>Vipera aspis</em>). We exposed individuals to a simulated heatwave together with water deprivation for 3 weeks, and manipulated air water vapour density (wet air vs. dry air) and microclimate (wet shelter vs. dry shelter) in a two-by-two factorial design. Dry air conditions led to substantial physiological dehydration and muscle wasting. Vipers exposed to dry air more often used a shelter that provided a moist micro-climate, which reduced dehydration and muscle wasting at the individual level. These results provide the first experimental evidence that active behavioural hydroregulation can mitigate specific physiological stress responses caused by a dry spell in an ectotherm. Future studies investigating organismal responses to climate change should consider moisture gradient in the habitat and integrate both hydroregulation and thermoregulation behaviours.
DOI: 10.5281/zenodo.7398169
title: Eco-physiological constraints of deep soil desiccation in semiarid tree plantations

description: This is a database used to describe the response of tree's eco-physiological characteristics to deep soil desiccation, mainly including 60 years of simulated soil moisture and soil temperature, model calibration and validation data sets, and simulated physiological and ecological indicators in different precipitation years.
DOI: 10.5281/zenodo.7398450
title: Crustal structure and melt distribution beneath a propagating ridge at the Galapagos triple junction region

description: The dataset contains six grid files from Zheng et al. (2022) (1)105W95W1S5N_mba.grd -- mantle Bougour anomaly calculated in this study (displayed in Fig. 1c). (2)105W95W1S5N_mba_ship_topo_global_FAA.grd -- Calculated mantle Bougour anomaly using mutltibeam bathymetry and global free air anomaly data (displayed in Fig. S1b). (3)105W95W1S5N_mba_global_topo_global_FAA.grd -- Calculated mantle Bougour anomaly using global bathymetry and global free air anomaly data (displayed in Fig. S1c). (4)105W95W1S5N_thermal_1k.grd -- thermal effect caused by plate cooling (displayed in Fig. S2b). (5)105W95W1S5N_rmba_1k.grd -- residual mantle Bougour anomaly (displayed in Fig. 2a). (6)105W95W1S5N_crust_1k.grd -- relative crustal thickness (displayed in Fig. 2b).
DOI: 10.5281/zenodo.7398421
title: WRF Geographic Files for Cordillera Mountain Range Precipitation Experiments

description: These WRF geographic files (in netcdf format) were used as input for experiments to evaluate the sensitivity of Tropical Cyclone precipitation to the height of the Cordillera Mountain Range in Luzon, Philippines. A total of six files are included, for two domains (d01 and d02) and three different orographic experiments (orig, redu, enha). These are provided to allow reproduction of the said sensitivity experiments.
DOI: 10.5281/zenodo.7398420
title: WRF Geographic Files for Cordillera Mountain Range Precipitation Experiments

description: These WRF geographic files (in netcdf format) were used as input for experiments to evaluate the sensitivity of Tropical Cyclone precipitation to the height of the Cordillera Mountain Range in Luzon, Philippines. A total of six files are included, for two domains (d01 and d02) and three different orographic experiments (orig, redu, enha). These are provided to allow reproduction of the said sensitivity experiments.
DOI: 10.6084/m9.figshare.21673709.v1
title: Supplementary Material for: Patterns of Surgical Recurrence in Patients with Hidradenitis Suppurativa

description: <b><i>Background:</i></b> Surgery is an essential part of hidradenitis suppurativa (HS) treatment. Understanding and reducing surgical recurrence are crucial to obtaining the best results in patients’ treatment. <b><i>Objective:</i></b> The aim of the study was to characterize surgical recurrences in a cohort of patients with HS treated with wide excision and second-intention healing. <b><i>Methods:</i></b> A prospective nested case-control study was conducted. A cohort of patients with HS treated with wide excision and second-intention healing was monitored for 68 weeks. The surgical procedure was classified as case (recurrence) or control (no recurrence). The type of recurrence was classified according to the elementary lesion in tunnel or abscess and inflammatory nodule (AN) recurrence. Sociodemographic and clinical data likely related to recurrence and the type of recurrence were evaluated. <b><i>Results:</i></b> Sixty-three patients were included, receiving a total of 82 surgical procedures. The mean age of the patients was 36.18 years, and the surgical site presented a Hurley stage II severity in 79.26% (65/82) of the interventions. Tunnel recurrence was observed in 8.5% (7/82) and AN recurrence in 15.85% (13/82) of the interventions. Obesity was associated with a higher risk of recurrence, for both tunnel and AN recurrence. Hurley III at the surgical site, a history of pilonidal sinus, and higher International Hidradenitis Suppurativa Severity Score System (IHS4) after surgery and at week 68 increased the risk of tunnel recurrence. <b><i>Conclusion:</i></b> We propose classifying surgical recurrence based on the elemental type of lesion. Tunnel recurrence could originate in the depth of the surgical scar and could be associated with both surgical site factors and inflammatory load. AN recurrence could originate in the borders of the surgical scar and may particularly benefit from preoperative ultrasound.
DOI: 10.6084/m9.figshare.21303741
title: Supplementary Material for: Evaluation of an Artificial Intelligence-based Detector of Sub- and Intra-Retinal Fluid on a large set of OCT volumes in AMD and DME

description: Abstract Introduction: In this retrospective cohort study, we wanted to evaluate the performance and analyze the insights of an artificial intelligence (AI) algorithm in detecting retinal fluid in spectral-domain OCT volume scans from a large cohort of patients with neovascular age-related macular degeneration (AMD) and diabetic macular edema (DME). Methods: A total of 3’981 OCT volumes from 374 patients with AMD and 11’501 OCT volumes from 811 patients with DME, acquired with Heidelberg Spectralis OCT device (Heidelberg Engineering Inc., Heidelberg, Germany) between 2013 and 2021. Each OCT volume was annotated for the presence or absence of intraretinal fluid (IRF) and subretinal fluid (SRF) by masked reading center graders (ground truth). The performance of an already published AI-algorithm to detect IRF, SRF separately and a combined fluid detector (IRF and/or SRF) of the same OCT volumes was evaluated. An analysis of the sources of disagreement between annotation and prediction and their relationship to central retinal thickness was performed. We computed the mean areas under the curves (AUC) and under the precision-recall curves (AP), accuracy, sensitivity, specificity and precision. Results: The AUC for IRF was 0.92 and 0.98, for SRF 0.98 and 0.99, in the AMD and DME cohort, respectively. The AP for IRF was 0.89 and 1.00, for SRF 0.97 and 0.93, in the AMD and DME cohort, respectively. The accuracy, specificity and sensitivity for IRF was 0.87, 0.88, 0.84, and 0.93, 0.95, 0.93, and for SRF 0.93, 0.93, 0.93, and 0.95, 0.95, 0.95 in the AMD and DME cohort respectively. For detecting any fluid, the AUC was 0.95 and 0.98, the accuracy, specificity and sensitivity was 0.89, 0.93, 0.90 and 0.95, 0.88 and 0.93, in the AMD and DME cohort, respectively. False positives were present when retinal shadow artifacts and strong retinal deformation were present. False negatives were due to small hyporeflective areas in combination with poor image quality. The combined detector correctly predicted more OCT volumes than the single detectors for IRF and SRF, 89.0% versus 81.6% in the AMD and 93.1% versus 88.6% in the DME cohort. Discussion/Conclusion: The AI-based fluid detector achieves high performance for retinal fluid detection in a very large dataset dedicated to AMD and DME. Combining single detectors provides better fluid detection accuracy than considering the single detectors separately. The observed independence of the single detectors ensures that the detectors learned features particular to IRF and SRF.
DOI: 10.17909/e21w-k824
title: Data from paper
DOI: 10.21227/2yae-zw20
title: The Properties and Sensing Mechanism of PdNPs-decorated Silicon Nanobelt Devices for H2 Sensing at Room Temperature

description: This study reports the properties and the sensing mechanism of Pd nanoparticles (PdNPs) decorated n+/n-/n+ double-junction silicon nanobelt (SNB) device as hydrogen (H2) gas sensor. The SNB devices are prepared via CMOS process. Plasma-enhanced atomic layer deposition (PEALD) is adopted for PdNPs deposition as sensing material on the Al2O3 dielectric of SNB devices.PEALD of PdNPs provides high conformity and fine control of the particle size. The PdNPs-decorated SNB devices working at room temperature are characterizedat H2 concentration ranging from 10 to 1000 ppm. Instead of using the traditional steady-state response, the slope of response and the corresponding sensing mechanism are presented to estimate concentration and shorten the response time. More than 60 % improvement in response time has been achieved for 10 to 1000 ppm H2 detection. To reduce recovery time, device localized Joule heating (DLJH) with a bias of 11 V for 240 s is demonstrated to restore the device back to the baseline.At a bias of 1 V, H2 sensing at room temperature consumes only 68.39 μW.
DOI: 10.21227/8z1j-5j72
title: The Properties and Sensing Mechanism of PdNPs-decorated Silicon Nanobelt Devices for H2 Sensing at Room Temperature

description: This study reports the properties and the sensing mechanism of Pd nanoparticles (PdNPs) decorated n+/n-/n+ double-junction silicon nanobelt (SNB) device as hydrogen (H2) gas sensor. The SNB devices are prepared via CMOS process. Plasma-enhanced atomic layer deposition (PEALD) is adopted for PdNPs deposition as sensing material on the Al2O3 dielectric of SNB devices.PEALD of PdNPs provides high conformity and fine control of the particle size. The PdNPs-decorated SNB devices working at room temperature are characterizedat H2 concentration ranging from 10 to 1000 ppm. Instead of using the traditional steady-state response, the slope of response and the corresponding sensing mechanism are presented to estimate concentration and shorten the response time. More than 60 % improvement in response time has been achieved for 10 to 1000 ppm H2 detection. To reduce recovery time, device localized Joule heating (DLJH) with a bias of 11 V for 240 s is demonstrated to restore the device back to the baseline.At a bias of 1 V, H2 sensing at room temperature consumes only 68.39 μW.
DOI: 10.5281/zenodo.7385633
title: Dataset of European Literary Awards

description: Dataset of the Polish, German and Czech literary prizes for the needs of research into European literary prizes environment. This is the test version for the sake of preliminary research and data model validation. This dataset relies heavily on the Wikidata and Wikipedia entities with elements of manual label and harmonisation of people, works and organisations with the LOD cloud. Most of this dataset is available under the CC0 license (all Wikidata data, data model itself and any additions from the authors of the dataset), but it also contains information from VIAF (Virtual International Authority File) which is made available under the ODC Attribution License.
description: This dataset contains information from VIAF (Virtual International Authority File) which is made available under the ODC Attribution License.
DOI: 10.5281/zenodo.7380506
title: Dataset of European Literary Awards

description: Dataset of the Polish, German and Czech literary prizes for the needs of research into European literary prizes environment. This is the test version for the sake of preliminary research and data model validation. This dataset relies heavily on the Wikidata and Wikipedia entities with elements of manual label and harmonisation of people, works and organisations with the LOD cloud. Most of this dataset is available under the CC0 license (all Wikidata data, data model itself and any additions from the authors of the dataset), but it also contains information from VIAF (Virtual International Authority File) which is made available under the ODC Attribution License.
description: This dataset contains information from VIAF (Virtual International Authority File) which is made available under the ODC Attribution License.
DOI: 10.6084/m9.figshare.21671588.v1
title: Maternal COVID-19 Infection and Associated Factors: A Cross-Sectional Study

description: This is raw data for a study done in Lusaka, Zambia at two tertiary centres that were the main referral centres for maternal Covid-19 infection. Data was collected between March to July 2021.
DOI: 10.6084/m9.figshare.21671588
title: Maternal COVID-19 Infection and Associated Factors: A Cross-Sectional Study

description: This is raw data for a study done in Lusaka, Zambia at two tertiary centres that were the main referral centres for maternal Covid-19 infection. Data was collected between March to July 2021.
DOI: 10.5281/zenodo.4063249
title: Least cost network data for ancient camel transportation in the Eastern desert of Egypt - Desert Networks HiSoMA CNRS

description: This repository contains the data necessary for the realization of a least cost network for camel transport during antiquity (Ptolemaic and Roman period) in the Egyptian eastern desert. The details of the network construction and data processing can be found in the the associated paper and datapaper. Paper<br> Manière, L., Crépy, M., Redon, B. (2020) Modelling the Hellenistic and Roman Road Networks of the Eastern desert of Egypt, a Semi-Empirical Approach Based on Modern Travelers’ Itineraries. Submitted for publication Datapaper<br> Manière, L., Crépy, M., Redon, B. (2020) Geospatial data from the “Modelling the Hellenistic and Roman Road Networks of the Eastern desert of Egypt, a Semi-Empirical Approach Based on Modern Travelers’ Itineraries” paper. Submitted for publication
DOI: 10.5281/zenodo.4063248
title: Least cost network data for ancient camel transportation in the Eastern desert of Egypt - Desert Networks HiSoMA CNRS

description: This repository contains the data necessary for the realization of a least cost network for camel transport during antiquity (Ptolemaic and Roman period) in the Egyptian eastern desert. The details of the network construction and data processing can be found in the the associated paper and datapaper. Study paper:<br> Manière, L., Crépy, M., Redon, B. (2020) Building a Model to reconstruct the Hellenistic and Roman Road Networks of the Eastern desert of Egypt, a Semi-Empirical Approach Based on Modern Travelers’ Itineraries. DOI : http://doi.org/10.5334/jcaa.67 Datapaper:<br> Manière, L., Crépy, M., Redon, B. (2020) Geospatial data from the “Modelling the Hellenistic and Roman Road Networks of the Eastern desert of Egypt, a Semi-Empirical Approach Based on Modern Travelers’ Itineraries” paper. DOI : http://doi.org/10.5334/joad.71
DOI: 10.5281/zenodo.4291876
title: Least cost network data for ancient camel transportation in the Eastern desert of Egypt - Desert Networks HiSoMA CNRS

description: This repository contains the data necessary for the realization of a least cost network for camel transport during antiquity (Ptolemaic and Roman period) in the Egyptian eastern desert. The details of the network construction and data processing can be found in the the associated paper and datapaper. Study paper:<br> Manière, L., Crépy, M., Redon, B. (2020) Building a Model to reconstruct the Hellenistic and Roman Road Networks of the Eastern desert of Egypt, a Semi-Empirical Approach Based on Modern Travelers’ Itineraries. DOI : http://doi.org/10.5334/jcaa.67 Datapaper:<br> Manière, L., Crépy, M., Redon, B. (2020) Geospatial data from the “Modelling the Hellenistic and Roman Road Networks of the Eastern desert of Egypt, a Semi-Empirical Approach Based on Modern Travelers’ Itineraries” paper. DOI : http://doi.org/10.5334/joad.71
DOI: 10.5281/zenodo.7398363
title: Data for: Sub-tropical aerosols enhance tropical cloudiness – a remote aerosol-cloud lifetime effect

description: This data-set contains the data requires for the paper "Sub-tropical aerosols enhance tropical cloudiness – a remote aerosol-cloud lifetime effect" by Guy Dagan The variables containing *mean* in their name present time-average over the last 4-days of the simulations.
DOI: 10.5281/zenodo.7398362
title: Data for: Sub-tropical aerosols enhance tropical cloudiness – a remote aerosol-cloud lifetime effect

description: This data-set contains the data requires for the paper "Sub-tropical aerosols enhance tropical cloudiness – a remote aerosol-cloud lifetime effect" by Guy Dagan The variables containing *mean* in their name present time-average over the last 4-days of the simulations.
DOI: 10.6084/m9.figshare.20375850.v4
title: Dataset Distinct impacts of food restriction and warming on growth, reproduction and survival

description: This file contains the data and scripts used in the article "Distinct impacts of food restriction and warming on growth, reproduction and survival". Growth, fecundity and survival data are available in df_growth.csv, df_fecundity.csv and df_survival.csv. In these files, "age" is the age of the fish, "temp" is the rearing temperature (20 °C or 30 °C), "food" is the feeding modality (ad libitum ad or restriction res), "condition" is the combination of temperature and resource modalities, "length_mm" is the fish size, fecundity is the number of eggs and "event" is the survival modality (1 = dead, 0 = alive). The scripts 01_growth.R, 02_fecundity and 03_survival.R analyze the growth, fecundity and survival curves. The 01_growth.R script uses the model written in bayesian_model.txt.
DOI: 10.6084/m9.figshare.21673793
title: new (1) (2).csv

description: Data, please contact me for further info.