cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20497245.v2
title: Original data to the paper: Effects of coenzyme Q10 supplementation on lipid profiles

description: This is the original data used by the meta-analysis entitled “Effects of coenzyme Q10 supplementation on lipid profiles in adults: a meta-analysis of randomized controlled trials”.
DOI: 10.6084/m9.figshare.21587670.v1
title: scRNA-seq dataset

description: This R Seurat object (.rds) contains 4 assay slots (raw counts matrix, sample-dependent SCT-transformed values, post-integration SCT-corrected values, and the secondary integration SCT-corrected values) and some meta-data slots, including the dataset of origin (GEO sample accession number), the batch of origin (GEO series accession number), the method used (scRNA-seq vs snRNA-seq), the clusters, and the cell type labelling.
DOI: 10.6084/m9.figshare.23774586.v4
title: Datasets and R script for Cape cobra colour analyses

description: Main datasets and reduced dataset for colour analysis to be used with R script.
DOI: 10.6084/m9.figshare.24159564.v5
title: SnakeTraits 1.0: a species-level database of life history and ecology of snakes

description: Understanding biodiversity from a functional perspective is important for both evolutionary and ecological studies. Snakes, a unique and diverse group of terrestrial vertebrates with more than 4000 species, are an important part of ecosystems. However, information on the functional traits of snakes is scattered throughout an extensive primary literature. With the exception of a few traits like body size, most traits remain relatively inaccessible to researchers interested in studying the ecology and evolution of snakes on a large scale. In this study, we present a global species-level functional traits database for snakes. This database follows the most recently taxonomic scheme and covers 4040 species. We compiled this database based on 1289 scientific literature sources, including peer-reviewed papers, books, online databases, natural history records and field guides. We collected information on traits including body size, relative tail length, diel activity pattern, colour, microhabitats, reproductive mode, clutch size, diet, venomous and infrared sensing ability. Detailed information on these traits and the coding system for categorical traits can be found in the supporting materials. This database is the most comprehensive on snakes as far as we know. As our objective was to build a living dataset, we will update the database annually by adding new species and modified the data following the taxonomic changes. We hope that this database will facilitate macroecological and macroevolutionary studies of this interesting and important group.
DOI: 10.6084/m9.figshare.3458828.v1
title: Annotated Bombus terrestris transcriptome

description: This data was first used in Riddell et al 2014 BMC Genomics http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-1031<br>
DOI: 10.6084/m9.figshare.7001243.v1
title: Airfoil data, cross-section parameter calculation and DTM-SFEM program, and FE model of the tapered blade

description: Airfoil data DU40_A17 for the NREL 5MW wind turbineMatlab program for cross-section parameter calculationMathematic program for eigenvalue calculationand FE model of the tapered blade<br>
DOI: 10.17632/6rkxpc9mj3
title: divorce & academic performance

description: 43 divorced parents (M = 37.91 years, SD = 6.56; 58% mothers and 42% fathers) who were part of the experimental intervention group. The longitudinal design assessed psychological symptomatology and indulgent parenting style before and after the intervention. Parents' subjective perception of their children's academic performance is measured 6 months after the intervention.
DOI: 10.25378/janelia.28087673.v1
title: MouseLight Neuron AA1614

description: A vast neural tracing effort by a team of Janelia scientists has upped the number of fully-traced neurons in the mouse brain by a factor of 10. Researchers can now download and browse the data in three dimensions. Inside the mouse brain, individual neurons zigzag across hemispheres, embroider branching patterns and, researchers have now discovered, can even spool out spindly fibers up to 45 centimeters long. Scientists can see and explore these wandering neural traces in 3-D in the most detailed map of mouse brain wiring yet created. The map reconstructs the shape and position of more than 300 of the 70 million neurons in the mouse brain. Previous efforts to trace the path of individual neurons had topped out in the dozens. The selectively-labeled neurons were mapped in an iterative process with two-photon microscopy. The brain is sliced in 200-micron sections and a few dozen neurons are labeled at a time and imaged. Each brain imaged yields about 50 terabytes of data, each containing mapped neurons which can be browsed via the NeuronBrowser application at https://ml-neuronbrowser.janelia.org/. Researchers interested in the complete raw data set should contact Janelia to discuss obtaining it via hardware transfer.
DOI: 10.6084/m9.figshare.11919576.v2
title: The proppin Bcas3 and its interactor KinkyA localize to the early phagophore and regulate autophagy

description: To resolve the signaling mechanisms that mediate the starvation-induced processes of <i>Dictyostelium</i> sporulation and encystation, we performed insertional mutagenesis on cells harboring an mRFP-tagged spore gene. We isolated a mutant in <i>kinkyA</i> (<i>knkA</i>), a gene without known function, which formed fruiting bodies with a kinked stalk and lacking viable spores. Immunoprecipitation of lysates of KnkA-YFP-transformed <i>knkA<sup>−</sup></i> cells yielded a mammalian BCAS3 homolog as a KnkA interactor. <i>bcas3<sup>−</sup></i> phenocopied <i>knkA<sup>−</sup></i> and Bcas3 colocalized with KnkA to puncta. Bcas3 shares sequence similarity with proppins (beta-propellors that bind phosphoinositides). Mutation of 2 Bcas3 residues that are essential for PtdIns3P binding in proppins prevented Bcas3 binding to PtdIns3P as well as punctate Bcas3 and KnkA localization. KnkA puncta also colocalized with small but not large vesicles that contain the autophagy protein Atg8 and were contiguous with the endoplasmic reticulum. <i>knkA<sup>−</sup></i> and <i>bcas3<sup>−</sup></i> cells showed a pronounced decrease of RFP-GFP-Atg8 in neutral early autophagosomes, indicating that KnkA and Bcas3 are required for macroautophagy/autophagy. Knockouts in <i>atg7, atg5</i> or <i>atg9</i> substantiated this finding by showing similar sporulation defects as <i>knkA<sup>−</sup></i> and <i>bcas3<sup>−</sup></i>. Defective <i>Dictyostelium</i> sporulation is evidently a useful diagnostic tool for the discovery of novel autophagy genes. <b>Abbreviations:</b> Atg: Autophagy-related; BCAS3: BCAS3 microtubule associated cell migration factor; cAMP: 3ʹ,5ʹ-cyclic adenosine monophosphate; ER: endoplasmic reticulum; GFP: green fluorescent protein; PAS: phagophore assembly site; PRKA/PKA: protein kinase cAMP-dependent; Proppin: beta‐propellers that bind phosphoinositides; PtdIns3P: phosphatidylinositol 3-phosphate; REMI: restriction enzyme-mediated insertional mutagenesis; RFP: red fluorescent protein; RT-qPCR: reverse transcriptase - quantitative polymerase chain reaction; WIPI: WD repeat domain, phosphoinositide interacting; YFP: yellow fluorescent protein
DOI: 10.6084/m9.figshare.13256456.v2
title: PMDDA POSNEG RPP RPN

description: PMDDA POSNEG RPP RPN data<br>
DOI: 10.6084/m9.figshare.17295180.v1
title: Early mobilization in acute stroke phase: a systematic review

description: Early mobilization is defined as out-of-bed activities in acute stroke phase, and has led to improvements in functional capacity and reduction of complications after stroke. This study aimed to investigate the effectiveness and safety of early mobilization in the acute stroke phase. This was a systematic review. We searched for studies with the keywords: “Stroke,” “Early mobilization” and “Functional outcomes.” Data source: NLM, LILACS, MEDLINE, PEDro, and Science Direct. Studies published up to June 2020 were included; (b) study eligibility criteria: clinical trials; (c) participants: stroke patients in the acute phase; (d) interventions: early mobilization; (e) study appraisal: two authors independently assessed the risk of bias, Grading of Recommendations Assessment, Development and Evaluation, and the Oxford Center for Evidence-Based Medicine Levels of Evidence. The safety was evaluated based on related and non-related adverse effects. Altogether, 476 studies were retrieved. After exclusion, seven studies involving 8663 patients were included in the qualitative synthesis. The main activities were elevation of the headboard, sitting, standing, and walking. The most important outcome assessed was the modified Rankin scale score (disability) after 3 months of stroke, and two studies showed that early mobilization improves functional capacity after stroke. the optimal time to start early mobilization is &gt; 24 h of stroke according to hemodynamic stability and safety criteria. The duration of mobilization is recommended between 15 and 45 minutes, divided into one, two, or three times a day. The focus of early mobilization should be on sitting, standing, and walking activity.
DOI: 10.6084/m9.figshare.19723264.v1
title: SPSS Data Sets

description: SPSS data sets of all quantitative data (including coded categories from qualitative analyses of interview transcripts) for Studies 1 to 4. Researchers interested in re-analyzing the interview transcripts (which are also in German) should get in touch with the corresponding author (judith.glueck@aau.at).
DOI: 10.6084/m9.figshare.23118359.v1
title: Frequency and engagement data

description: Data showing frequency of posts containing adolescent-targeted strategies and the engagement recorded per post
DOI: 10.6084/m9.figshare.6181031.v1
title: Raw data_thermoregulatory behaviour from Thermal physiology and thermoregulatory behaviour exhibit low heritability despite genetic divergence between lizard populations

description: Raw data_thermoregulatory behaviour
DOI: 10.17632/jcrg6zdtx8
title: Debt Dynamics with Fixed Issuance Costs

description: Matlab replication code for the paper, "Debt Dynamics with Fixed Issuance Costs,''  by Luca Benzoni, Lorenzo Garlappi, Robert S. Goldstein, and Chao Ying. Online Appendix by Julien Hugonnier
DOI: 10.6084/m9.figshare.13246271.v1
title: Supplementary Material for: Thyroidectomy in Pediatric Patients with Graves’ Disease: A Systematic Review of Postoperative Morbidity

description: <b><i>Background:</i></b> Graves’ disease (GD) is the most common cause of hyperthyroidism. In children, the overall relapse frequency after treatment with antithyroid drugs is high. Therefore, many pediatric GD patients eventually require thyroidectomy as definitive treatment. However, the postoperative complications of thyroidectomy in pediatric GD patients are poorly reported. <b><i>Objective:</i></b> To identify the frequency of short- and long-term postoperative morbidities after thyroidectomy in pediatric GD patients. <b><i>Methods:</i></b> A systematic review of the literature (PubMed and Embase) was performed to identify studies reporting short- and long-term postoperative morbidities after thyroidectomy in pediatric GD patients according to the PRISMA guidelines. <b><i>Results:</i></b> Twenty-two mainly retrospective cohort studies were included in this review evaluating short- and long-term morbidities in 1,424 children and adolescents. The frequency of transient hypocalcemia was 22.2% (269/1,210), with a range of 5.0–50.0%. The frequency of permanent hypocalcemia was 2.5% (36/1,424), with a range of 0–20.0%. Two studies reported high frequencies of permanent hypocalcemia, 20.0 (6/30) and 17.4% (9/52), respectively. The 20% frequency could be explained by low-volume surgeons in poorly controlled GD patients. Only 21 cases of permanent hypocalcemia were reported in the 1,342 patients included in the other 20 studies (1.6%). Transient and permanent recurrent laryngeal nerve injury were reported less frequently, with frequencies between 0–20.0 and 0–7.1%, respectively. Infection, hemorrhage/hematoma, and keloid development were only rarely reported as postoperative complications. <b><i>Conclusion:</i></b> The results of this systematic review suggest that thyroidectomy is a safe treatment option for pediatric GD patients. The minority of patients will experience transient and benign morbidities, with hypocalcemia being the most common transient postoperative morbidity. Permanent postoperative morbidities are relatively rare.
DOI: 10.6084/m9.figshare.25010750.v2
title: <b>Archaeal hydroxylated isoprenoid GDGTs</b><b> in Asian lake sediments: A new tool for terrestrial paleotemperature reconstructions</b>

description: Hydroxylated isoprenoid GDGTs (OH-GDGTs) have emerged as a novel tool for reconstructing sea surface temperatures. However, when using marine OH-GDGT calibration in lacustrine settings, it leads to a significant overestimation of temperatures, emphasizing the necessity for a thorough examination of OH-GDGTs in lakes. Here, we investigated OH-GDGT distributions in surface sediments from 65 lakes in West China and compiled published global lake and marine OH-GDGT datasets. Among all GDGT-based indices, RI-OH showed the strongest correlation with temperature across global lakes. The RI-OH value was higher in lakes than in marine sediments, likely due to differences in the composition of Group 1.1a thaumarchaeotal species between the two settings. The first global RI-OH temperature calibration for lakes was developed and it addressed the issue of temperature overestimation when applied to both water column and sediment core, highlighting the potential of OH-GDGTs as a new terrestrial paleothermometer.
DOI: 10.6084/m9.figshare.28395878.v1
title: Dateset-"Reservoir-assisted quantum battery charging at finite temperatures"

description: This folder contains the numerical simulation results data obtained using MATLAB tools.Each file corresponds to a set of data points for a curve depicted in the relevant figure of the article "Reservoir-assisted quantum battery charging at finite temperatures". The corresponding figures are:01_fig4T0.csv; 01_fig4T1.csv; 01_fig4T10.csv; 01_fig4T50.csv -&gt; Fig. 4)02_fig7T0.csv; 02_fig7T1.csv; 02_fig7T10.csv; 02_fig4T50.csv -&gt; Fig. 7)03_fig8R_T.csv -&gt; Fig. 8)04_fig11T0.csv; 04_fig11T05.csv; 04_fig11T1.csv; 04_fig11T10.csv -&gt; Fig. 11)05_fig12T0.csv; 05_fig12T05.csv; 05_fig12T1.csv; 05_fig12T10.csv -&gt; Fig. 12)06_fig13R_T.csv -&gt; Fig. 13)07a-fig17(a)_3T0_chuneng.csv; 07a-fig17(a)_3T0_tiqu.csv; 07a-fig17(a)_3T10_chuneng.csv; 07a-fig17(a)_3T10_tiqu.csv -&gt; Fig. 17a)07b-fig17(b)_3T0_chuneng.csv; 07b-fig17(b)_3T0_tiqu.csv; 07b-fig17(b)_3T10_chuneng.csv; 07b-fig17(b)_3T10_tiqu.csv -&gt; Fig. 17b)07c-fig17(c)_3T0_chuneng.csv; 07c-fig17(c)_3T0_tiqu.csv; 07c-fig17(c)_3T10_chuneng.csv; 07c-fig17(c)_3T10_tiqu.csv -&gt; Fig. 17c)07d-fig17(d)_3T0_chuneng.csv; 07d-fig17(d)_3T0_tiqu.csv; 07d-fig17(d)_3T10_chuneng.csv; 07d-fig17(d)_3T10_tiqu.csv -&gt; Fig. 17d)<br>08a-fig21(a)_3T0_chuneng.csv; 08a-fig21(a)_3T0_tiqu.csv; 08a-fig21(a)_3T10_chuneng.csv; 08a-fig21(a)_3T10_tiqu.csv -&gt; Fig. 21a)08b-fig21(b)_3T0_chuneng.csv; 08b-fig21(b)_3T0_tiqu.csv; 08b-fig21(b)_3T10_chuneng.csv; 08b-fig21(b)_3T10_tiqu.csv -&gt; Fig. 21b)08c-fig21(c)_3T0_chuneng.csv; 08c-fig21(c)_3T0_tiqu.csv; 08c-fig21(c)_3T10_chuneng.csv; 08c-fig21(c)_3T10_tiqu.csv -&gt; Fig. 21c)08d-fig21(d)_3T0_chuneng.csv; 08d-fig21(d)_3T0_tiqu.csv; 08d-fig21(d)_3T10_chuneng.csv; 08d-fig21(d)_3T10_tiqu.csv -&gt; Fig.21d)<br>
DOI: 10.6084/m9.figshare.5123425.v1
title: Supplementary Material for: Usefulness of the Preoperative Administration of Tegafur Suppositories as Alternative Adjuvant Chemotherapy for Patients with Resectable Stage II or III Colorectal Cancer: A KODK4 Multicenter Randomized Control Trial

description: <b><i>Objective:</i></b> The aim of this study was to evaluate the feasibility and conferred protection against recurrence of preoperatively administered tegafur suppositories following the intravenous and oral administration of fluoropyrimidine in a multicenter randomized control trial. <b><i>Methods:</i></b> Patients with clinical T3/4 colorectal cancer were randomly assigned to receive the preoperative administration of tegafur suppositories (group A) or no preoperative treatment (group B). The primary end points were disease-free survival (DFS) and overall survival (OS). <b><i>Results:</i></b> The mean follow-up periods were 80.9 ± 31.0 months in group A and 64.5 ± 28.8 months in group B. The 5-year DFS rates were 89.3% in group A and 70.3% in group B (p = 0.045), whereas the 5-year OS rates were 91.4% in group A and 73.2% in group B (p = 0.051). Furthermore, a significant difference in the cumulative distant metastatic rate was observed (group A, 7.4% vs. group B, 23.4%; p = 0.03). However, no significant difference in the cumulative local recurrence rate was seen (group A, 4.6% vs. group B, 8.2%; p = 0.68). <b><i>Conclusion: </i></b>Despite a relatively small sample size, preoperative tegafur suppositories might protect recurrences and improve survival rates, mainly by preventing distant metastasis. These findings suggest the utility of tegafur suppositories as an alternative neoadjuvant treatment in modern chemotherapy for colorectal cancer.
DOI: 10.6084/m9.figshare.12789926.v2
title: Turbulent Jet Flow Data

description: Velocity fields for axisymmetric jet flow at Reynolds number 21000-77900.
DOI: 10.6084/m9.figshare.24071067.v1
title: The supplementary simulation results.xls

description: The data about supplementary simulation results.
DOI: 10.6084/m9.figshare.25244434.v1
title: <b>Unlocking Innovation: How Absorptive Capacity Unleashes the Potential of Motivation and Leadership to Catalyze Innovative Work Behaviors in Batam</b>

description: Research exploring the relationship between work motivation, transformative leadership, absorptive capacity, and innovative behavior reveals important findings that highlight how work motivation and inspirational leadership can enhance the ability of organizations and individuals to absorb and utilize new knowledge, which in turn promotes innovative behavior
DOI: 10.6084/m9.figshare.26234561.v2
title: Source data.xlsx

description: Source data of figures in the article "<b>Multifunctional human visual pathway-replicated hardware based on 2D materials</b>".
DOI: 10.17632/mnv9hvk93j
title: Trends in Physician Consultation Times for Various Dermatologic Conditions: Analysis of NAMCS 2011–2019 Data

description: Supplementary Data for Trends in Physician Consultation Times for Various Dermatologic Conditions: Analysis of NAMCS 2011–2019 Data
DOI: 10.6084/m9.figshare.13292912.v2
title: Antitumor Compounds from Cordyceps Militaris

description: We established a large-scale separation and purification platform to obtain kilogram amounts of natural compounds from the extraction of the fruiting bodies of <i>C. militaris. </i>Seven monomeric compounds, N6-(2-hydroxyethyl) adenosine (HEA), ergosterol (E), ergosta-7,22-diene-3,5,6-triol (EI), 5α,8α-epidioxy-(22<i>E</i>,24<i>R</i>)-ergosta-6,22-dien-3β-ol (ED), ergosta-7,22-dien-3β,5α-dihydroxy-6-one(EO),(20<i>S</i>,22<i>E</i>,24<i>R</i>)-Eegosta-7,22-dien-3β,5α,6β,9α-tetraol22<i>E</i>,24<i>R</i>-ergosta-7,22-diene-3β,5α,6β,9α-tetraol (ET), and (24<i>S</i>)-5,22-stigmastadien-3β-ol (SE), were harvested using different solvents, and the structure of each compound was identified. The activities and functions of the isolated compounds were tested by label-free, real-time cell analysis methods at the cellular level, and their antitumor effects were verified using mouse models of Lewis and H22 tumors. The anti-insomnia effect of HEAadenosine was tested in an anti-insomnia mouse model. The interactions between E and 8 A549 cell proteins were determined. The biosynthetic pathways of HEA and E, which possess pharmacologically active monomers, were determined. This platform can provide a theoretical basis for the further development and discovery of novel natural medicines.
DOI: 10.6084/m9.figshare.13487958.v1
title: Book.xlsx

description: Looking for funding to start off several small businesses in the biological science field
DOI: 10.6084/m9.figshare.9805394.v3
title: Predicting the Emergence of Community Smells using Socio-Technical Metrics

description: Online appendix of the paper titled: "Predicting the Emergence of Community Smells using Socio-Technical Metrics"
DOI: 10.6084/m9.figshare.865621.v1
title: Brain of the sheep

description: STL-Model of the sheep's brain derived from a T2 MRI dataset.
DOI: 10.17632/gkzvmg5f6z
title: Clonal hematopoiesis quantified in human bone marrow whole genome sequencing data

description: This repository contains somatic variant calls and pre-processed data accompanying the manuscript

Detecting and quantifying clonal selection in somatic stem cells

Verena Körber1,2*, Niels Asger Jakobsen2, Naser Ansari-Pour2,3, Rachel Moore2,4, Nina Claudino1, Marlen Metzner2, Eva Thielecke1,2, Franziska Hörsch1, Batchimeg Usukhbayar2, Mirian Angulo Salazar2, Simon Newman3,5, Benjamin JL Kendrick3,5, Adrian H Taylor3,5, Rasheed Afinowi-Luitz5, Roger Gundle3,5, Bridget Watkins3, Kim Wheway3, Debra Beazley3, Stephanie G Dakin3, Antony Palmer3,5, Andrew J Carr3, Paresh Vyas2*† Thomas Höfer1*†

Affiliations:
1 Division of Theoretical Systems Biology, German Cancer Research Center (DKFZ); Heidelberg, Germany. 
2 MRC Molecular Haematology Unit, Oxford Biomedical Research Center, Hematology Theme, Oxford Centre for Haematology, Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford; Oxford UK.
3 Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, Botnar Research Centre, University of Oxford; Oxford UK. 
4 Cambridge Genomics Laboratory, Cambridge University Hospitals, Cambridge, UK; 5Nuffield Orthopaedic Centre, Oxford University Hospitals NHS Foundation Trust; Oxford UK.

†These authors contributed equally.
*Correspondence: verena.korber@ndcls.ox.ac.uk (VK), paresh.vyas@imm.ox.ac.uk (PV), t.hoefer@dkfz.de (TH)
DOI: 10.4121/uuid:a390e8d4-d2dc-4f5c-9e41-03df0e5252bd
title: In-situ High Temperature Electron Back-Scatter Diffraction (HT EBSD) maps

description: This video shows the in-situ high temperature Electron Backscatter Diffraction measurements during cyclic partial phase transformations in an Fe-0.056C-2.0Mn (all in mass%) alloy. The video includes the recorded OIM maps and the time and temperature for each measurement. This experiment has been conducted in the Zernike Institute for Advanced Materials, University of Groningen, the Netherlands.
DOI: 10.6084/m9.figshare.14417225.v1
title: Ti38V15Nb23Hf24

description: The training and validation dataset (in numpy format) for variational autoencoders based order parameter for Ti38V15Nb23Hf24 alloy. Each data sample is a system configuration with the sampled temperature provided in the corresponding label file.