cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5xtvd4
title: Occurrence Download

description: A dataset containing 90469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (China, Japan, Korea (Democratic People’s Republic of), Korea, Republic of, Pakistan, India, Nepal, Bhutan, Bangladesh, Sri Lanka, Myanmar, Thailand, Lao People’s Democratic Republic, Cambodia, Viet Nam, Chinese Taipei, Philippines, Malaysia, Indonesia, Papua New Guinea, Solomon Islands, Australia, Timor-Leste, Afghanistan)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Fabronia secunda, Fagopyrum esculentum, Fagraea ceilanica, Falconeria insignis, Ficus drupacea, Ficus nervosa, Fimbristylis aestivalis, Fimbristylis tetragona, Fissidens anomalus, Fissidens crispulus, Fissidens taxifolius, Floribundaria floribunda, Floribundaria intermedia, Fragaria nilgerrensis, Frullania moniliata, Frullania obscura, Frullania polyptera, Funaria hygrometrica, Galium asperifolium, Garckea flexuosa, Gaultheria fragrantissima, Geissaspis cristata, Gemmabryum exile, Gentiana pedicellata, Geranium nepalense, Girardinia diversifolia, Glochidion bourdillonii, Glochidion ellipticum, Glochidion heyneanum, Glycosmis pentaphylla, Gomphandra tetrandra, Gonostegia pentandra, Gonostegia triandra, Grewia laevigata, Grewia multiflora, Grewia oppositifolia, Grimmia nepalensis, Grimmia ovalis, Grona heterocarpos, Gynostemma pentaphyllum, Gynura nitida, Harpullia arborea, Hedychium spicatum, Helicia nilagirica, Heptapleurum wallichianum, Herbertus dicranus, Herpetineuron toccoae, Heynea trijuga, Holomitrium densifolium, Homaliodendron flabellatum, Hydrocotyle javanica, Hydrogonium arcuatum, Hydrogonium consanguineum, Hydrogonium orientale, Hygrophila ringens, Hymenasplenium cheilosorum, Hyophila nymaniana, Hypericum japonicum, Hypopterygium flavolimbatum, Impatiens scabrida, Indigofera trifoliata, Indigofera wightii, Ischaemum ciliare, Ischaemum semisagittatum, Isodon coetsa, Japanobotrychum lanuginosum, Jasminum arborescens, Juncus inflexus, Juncus prismatocarpus, Juncus wallichianus, Korthalsella japonica)"
 ]
}

 The dataset includes 90469 records from 462 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000341-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.18gc7
title: Data from: Postural control during quiet bipedal standing in rats

description: The control of bipedal posture in humans is subject to non-ideal
 conditions such as delayed sensation and heartbeat noise. However, the
 controller achieves a high level of functionality by utilizing body
 dynamics dexterously. In order to elucidate the neural mechanism
 responsible for postural control, the present study made use of an
 experimental setup involving rats because they have more accessible neural
 structures. The experimental design requires rats to stand bipedally in
 order to obtain a water reward placed in a water supplier above them.
 Their motions can be measured in detail using a motion capture system and
 a force plate. Rats have the ability to stand bipedally for long durations
 (over 200 s), allowing for the construction of an experimental environment
 in which the steady standing motion of rats could be measured. The
 characteristics of the measured motion were evaluated based on aspects of
 the rats’ intersegmental coordination and power spectrum density (PSD).
 These characteristics were compared with those of the human bipedal
 posture. The intersegmental coordination of the standing rats included two
 components that were similar to that of standing humans: center of mass
 and trunk motion. The rats’ PSD showed a peak at approximately 1.8 Hz and
 the pattern of the PSD under the peak frequency was similar to that of the
 human PSD. However, the frequencies were five times higher in rats than in
 humans. Based on the analysis of the rats’ bipedal standing motion, there
 were some common characteristics between rat and human standing motions.
 Thus, using standing rats is expected to be a powerful tool to reveal the
 neural basis of postural control.
description: Body segment angles of
 standing ratsmotion.xlsxCOP data of standing ratsforcePlate.xlsxCOM data of standing ratscom.xlsx
DOI: 10.21223/p3/hvxvlb
title: Dataset for: Characterization database of 64 genotypes of native potatoes of the Phurejas group from the Cumbal Indigenous Reservation - 2025

description: A morphological characterization was carried out in 2025 to document the tuber traits of 64 native potato varieties provided by farmers in Cumbal, Colombia. The evaluation followed the native potato morphological descriptor proposed by Gómez (2000) and included the systematic recording of 20 traits, such as tuber shape, skin color, flesh color, and other relevant morphological characteristics
DOI: 10.5061/dryad.q2s7q8m
title: Data from: Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis

description: Pinaceae comprises 11 genera, and represents the largest family of
 conifers with an extensive wild distribution in the Northern Hemisphere.
 Intergeneric relationships of Pinaceae have been investigated using many
 morphological characters and molecular markers, but phylogenetic positions
 of four genera, including Cathaya, Cedrus, Nothotsuga and Pseudolarix,
 remain controversial or have not been completely resolved. To completely
 resolve the intergeneric relationships of Pinaceae, we conducted a
 comparative transcriptomic study of 14 species representing all Pinaceae
 genera. Multiple data sets, containing up to 6,369,681 sites across 4676
 loci, were analyzed using concatenation and coalescent methods. Our study
 generated a robust topology, which divides Pinaceae into two clades, one
 (pinoid) including Cathaya, Larix, Picea, Pinus, and Pseudotsuga, and the
 other (abietoid) including Abies, Cedrus, Keteleeria, Nothotsuga,
 Pseudolarix, and Tsuga. Cathaya and Pinus form a clade sister to Picea;
 Cedrus is sister to the remaining abietoid genera, and the two genera
 Nothotsuga and Tsuga form a clade sister to Pseudolarix. The discordant
 positions of Cathaya, Cedrus and Pseudolarix in different gene trees could
 be explained by ancient radiation and/or molecular homoplastic evolution.
 The hybrid origin hypothesis of Nothotsuga is not supported. Based on
 molecular dating, extant Pinaceae genera diverged since about 206 Mya,
 earlier than the break-up of Pangea, and the divergence among the pinoid
 genera occurred earlier than the split among the abietoid genera.
 Moreover, our study indicates that two radiation events occurred in the
 evolution of Pinaceae genera, and some important morphological characters
 evolved multiple times based on ancestral state reconstruction.
description: pep_FcC_supermatrix.fasCDS12_FcC_supermatrixCDS_FcC_supermatrixPhylogenetic TreeAll_phylogenetic_tree_1000.rardivergence times of Pinaceae genera (MCMCTREE)FigTree.tre
DOI: 10.5061/dryad.p56mf
title: Data from: Modularity induced gating and delays in neuronal networks

description: Neural networks, despite their highly interconnected nature, exhibit
 distinctly localized and gated activation. Modularity, a distinctive
 feature of neural networks, has been recently proposed as an important
 parameter determining the manner by which networks support activity
 propagation. Here we use an engineered biological model, consisting of
 engineered rat cortical neurons, to study the role of modular topology in
 gating the activity between cell populations. We show that pairs of
 connected modules support conditional propagation (transmitting stronger
 bursts with higher probability), long delays and propagation asymmetry.
 Moreover, large modular networks manifest diverse patterns of both local
 and global activation. Blocking inhibition decreased activity diversity
 and replaced it with highly consistent transmission patterns. By
 independently controlling modularity and disinhibition, experimentally and
 in a model, we pose that modular topology is an important parameter
 affecting activation localization and is instrumental for population-level
 gating by disinhibition.
description: matlab code for
 generating the paper figuresmatlab functions are
 named FigX corresponding to the Xth figure (figures 1 and 2 are
 illustrative and were not included). Some additional plotting functions
 are included and are needed for figure generation.matlabCodeForFigures.rardataFig3.mat files for generating figures. dataFigX correspond to data required for generating figure X.dataForFigures.rar
DOI: 10.5061/dryad.2m65j
title: Data from: The design of a beautiful weapon: compensation for opposing sexual selection on a trait with two functions

description: Male fiddler crabs, genus Uca, have one greatly enlarged claw with which
 they court females and threaten and fight other males. Longer claws are
 more effective signals but are thought to be less effective weapons
 because the relative closing force at the tip of the claw decreases with
 claw length. We studied claw morphology and fighting in Uca terpsichores
 and Uca beebei and found a mechanism that may resolve opposing selection
 for signaling and fighting ability. When males fought they delivered
 gripping forces not at the tips but at the tubercles on the inner margins
 of their claws’ fingers. As claws grow, these tubercles remain relatively
 close to the apex of the gape. Consequently, the mechanical advantage that
 governs the forces that can be delivered at these tubercles decreases only
 slightly with increasing claw length allowing the claw to be an effective
 signal and a powerful weapon. Animal weapons are exceptionally diverse in
 form and detail of armature and the causes of this diversity are poorly
 understood. We suggest that the designs of weapons may often reflect
 compensatory patterns of growth and placement of armature that enhances
 the weapon’s overall utility for multiple uses in competition for mates.
description: Uca beebei
 fight-1(NTS15)Recorded in the field,
 west bank of the Pacific entrance to the Panama Canal, 1 km north of the
 Bridge of the Americas.Uca beebei
 fight-2(NTS15)Fight between male Uca
 beebei recorded in the field, west bank of the Pacific entrance to the
 Panama Canal, 1 km north of the Bridge of the Americas.
DOI: 10.5061/dryad.3vh79
title: Data from: Vegetation cover in relation to socioeconomic factors in a tropical city assessed from sub-meter resolution imagery

description: Fine-scale information about urban vegetation and social-ecological
 relationships is crucial to inform both urban planning and ecological
 research, and high spatial resolution imagery is a valuable tool for
 assessing urban areas. However, urban ecology and remote sensing have
 largely focused on cities in temperate zones. Our goal was to characterize
 urban vegetation cover with sub-meter resolution aerial imagery, and
 identify social-ecological relationships of urban vegetation patterns in a
 tropical city, the San Juan Metropolitan Area, Puerto Rico. Our specific
 objectives were to: i) map vegetation cover using sub-meter spatial
 resolution (0.3 m) imagery; ii) quantify the amount of residential and
 non-residential vegetation; and iii) investigate the relationship between
 patterns of urban vegetation versus socioeconomic and environmental
 factors. We found that 61% of the San Juan Metropolitan Area was green,
 and that our combination of high spatial resolution imagery and
 object-based classification was highly successful for extracting
 vegetation cover in a moist tropical city (97% accuracy). In addition,
 simple spatial pattern analysis allowed us to separate residential from
 non-residential vegetation with 76% accuracy, and patterns of residential
 and non-residential vegetation varied greatly across the city. Both
 socioeconomic (e.g., population density, building age, detached homes) and
 environmental variables (e.g., topography) were important in explaining
 variations in vegetation cover in our spatial regression models. However,
 important socioeconomic drivers found in cities in temperate zones, such
 as income and home value, were not important in San Juan. Climatic and
 cultural differences between tropical and temperate cities may result in
 different social-ecological relationships. Our study provides novel
 information for local land use planners, highlights the value of high
 spatial resolution remote sensing data to advance ecological research and
 urban planning in tropical cities, and emphasizes the need for more
 studies in tropical cities.
description: READMEThis file describes the
 material included in the repository. Please read this file first, and do
 not hesitate to contact us if you have any questions or
 comments!Vegetation
 map“veg_map.zip” contains
 our vegetation cover layer ("SJMA_residential.tif"), classified
 into residential and non-residential. Class 1= non-vegetation Class 2=
 non-residential vegetation Class 3= residential vegetation. Spatial
 Reference:
 NAD_1983_StatePlane_Puerto_Rico_Virgin_Islands_FIPS_5200veg_map.zipCensus level informationThis file contains the shapefile with the socioeconomic and environmental variables at the census block group level (“SJMA_census_v1.shp”). The shapefile field names and description are provided in the associated readme file.SJMA_Census.zipR script“R_Script.rtf” is the R script used for analyzing the relationships between urban vegetation and socioeconomic factorsR_Script.rtf
DOI: 10.15468/dl.4dwvht
title: Occurrence Download

description: A dataset containing 1473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rumex acetosella L.",
 "Country is Ukraine"
 ]
}

 The dataset includes 1473 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010376-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg7f9p
title: Occurrence Download

description: A dataset containing 3349306 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida (Harv.) Suringar)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3349306 records from 280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010070-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.923523.v1
title: Location of data citations in traditional scholarly publications

description: This dataset contains the location of 40 citations to figshare content in traditional scholarly articles. This is not meant to be a comprehensive dataset, just a small testing sample to identify whether academic researchers are citing non traditional outputs in a standardised manner. eg. http://www.force11.org/datacitation As can be seen, only 10 out of the 40 are cited in the reference list, as is the recommendation. The fact that bibliometric companies that are involved in citation counting only look at reference lists suggests this approach may be problematic as academics change their thinking towards non-pdf based research outputs. The citations were taken from a random selection of google scholar notification emails. All articles in the dataset have the citation in front of the paywall.
DOI: 10.17632/fd2fhwxfdp
title: Locations of green-lipped mussel attachment within macroalgal substrates on a mussel reef in New Zealand

description: The goal of this study was to develop and test a tool that has the potential to aid restoration practitioners in the selection of suitable natural substrates for overcoming substrate limitation at mussel reef restoration sites in New Zealand and potentially elsewhere across the globe. One of the objectives of this study was to compare the relative performance of various macroalgae species with differing morphology as attachment substrates for three size classes of juvenile green-lipped mussels or Perna canaliculus on two remnant mussel reefs. To aid an understanding of why certain morphological characteristics of macroalgae support the presence of juvenile P. canaliculus at different ontogenic stages, the location of attachment within each macroalga species was characterised for each mussel size class. This data details the presence of three different size classes of juvenile green-lipped mussels or Perna canaliculus (&lt;10 mm, 10 - &lt;20 mm, and 20 - &lt;30 mm in shell length) attached to different locations within macroalgae that were sampled on two remnant intertidal mussel reefs in northeastern New Zealand (Waipu Cove and Pakiri Beach). The six possible locations of mussel attachment on different macroalgae species were; the holdfast, stipe, lower branches, lower branch nodes, upper branches, and upper branch nodes. The presence of juvenile mussels in each size class attached to each location within each macroalga species is reported binomially (i.e., present: 1, absent: 0) in the "Juvenile Mussel Presence" column. 
For smaller juvenile mussels &lt;10 mm, attachments to the branches and branch nodes of macroalgae were far more common than for juveniles ≥10 mm, suggesting that juvenile mussel attachment is more likely to be influenced by the branching morphology of macroalgae earlier in juvenile development. For juveniles &lt;10 mm SL, attachments to the upper branches and nodes of macroalgae were more common at Waipū Cove than at Pākiri Beach, where smaller juveniles were more often attached to the lower portion of macroalgae. Lastly, macroalgal holdfasts were the most common location of attachment in this study for juvenile mussels ≥10 mm, and for juveniles smaller than 10 mm, it was as common of an attachment location as the branch nodes of macroalgae. These results suggest that juvenile mussels attached to macroalgae are likely to be influenced by a macroalga’s holdfast morphology throughout all stages of development but especially in later development.
DOI: 10.6084/m9.figshare.14714370.v1
title: Supplementary Table 8 - OrgC + Se Liquid Culture Mass Balance

description: Data listed are mass balance calculations used to determine the amount of Se that was volatilized (missing) from fungal cultures exposed to Se(IV). Mass balance was calculated by subtracting the amount of Se(IV) originally added to each fungal culture or control from the amount quantified in the aqueous and solid phases for each respective experiment. Aqueous phase Se(IV) was determined via ion chromatography and solid phase Se was determined via inductively coupled plasma - optical emission spectrometry.
DOI: 10.6084/m9.figshare.22796135.v1
title: Mab VJ datasets

description: This folder contains two supplementary table for the manuscript “The immunogenicity of human-origin therapeutic antibodies are associated with V gene usage”. Supplementary Table 1: A table containing the median percent of sequences that contain a V or J gene in the B cell repertoire sequencing dataset from OAS. Supplementary Table 2: A table containing the information of 93 human or humanized antibody drugs, including the clinical ADA rate, the usage of V and J alleles, the number of mismatches with the germline, the disease indications, the antibody type (human or humanized) and first US approval time.
DOI: 10.6084/m9.figshare.28869569.v1
title: Engineering a 3D Wounded Skin Equivalent to Study Early Inflammatory and Regenerative Responses In Vitro

description: Traditional models for studying wound healing, including 2D cell cultures and animal models, present substantial limitations in mimicking human skin physiology. In this study, we present a three-dimensional wounded skin equivalent (3DWoundSE) composed of human cells as a physiologically relevant <i>in vitro</i> platform to investigate wound healing processes. The model builds upon a previously established 3D skin equivalent (3DSE) and incorporates a reproducible full-thickness central wound. We characterised the 3DWoundSE using histology, cytotoxicity assays, immunofluorescence staining, and pro-inflammatory cytokine profiling at multiple time points post-wounding. Results revealed hallmark wound responses, including increased LDH and apoptosis-inducing factor (AIF) expression, dynamic Ki-67 proliferation changes, and a pro-inflammatory cytokine response, notably elevated IL-6, IL-8, IL-33 and TNF-α levels. Compared to the intact 3DSE, this 3DWoundSE demonstrated enhanced responsiveness to injury and cytotoxic stimuli, confirming its utility for early wound response assessment. This platform offers a reproducible and ethically sound alternative to animal models, with potential applications in dermatological research, drug development, and therapeutic screening.
DOI: 10.17632/db52syhgr8
title: Figure 1. African map showing the investigated countries and cities. 1: Ouagadougou; 2: Ngaoundere; and 3: Yaounde;Table 1. DNA sequence read metrics of the six metagenomic samples

description: African map showing the investigated countries and cities, and the DNA sequence read metrics of the six metagenomic samples from soil from irrigated fields (IRI) and non-irrigated fields (NIR) based on MG-RAST annotation.
DOI: 10.6084/m9.figshare.19093349.v1
title: Experiential Value dictionary

description: The dataset contains two folder one folder corresponds to augmented reality experiential value dictionary and the other folder corresponds to tourism experiential value dictionary.<br>In each folder we have following sub-folders:1. OnlineReviews: The folder that contains the review data that is used to build the construct-specific dictionary2. RDictinaryFinal: The raw dictionary created from Roget’s Thesaurus without any transformation scores3. SignificantTest.py: Python script to perform t-test on holdout data4. HoldoutConstructWordScores: The folder containing the actual and estimated ratings of holdout data5. FinalSDTABDOutput: The final dictionary along with the transformation parameters6. Tweets: The twitter dataset used to measure the experiential value from developed dictionary7. Twitter ratings: The experiential value scores derived from twitter dataset and developed experiential value dictionary<br>To run the t-test:1. Install python 3.x in your machine. 2. Install the python libraries xlrd, xlwt, scipy, sklearn and math 3. Place the HoldoutConstructWordScores and SignificantTest.py in a folder4. Open python shell in the folder containing the HoldoutConstructWordScores and SignificanceTest.py files5. Run the test using command - python SignificantTest.py<br>
DOI: 10.6084/m9.figshare.27310665.v2
title: Source Data and Dataset for the Digital Brain Project

description: Source Data and dataset for the Digital Brain Project: Source data for Figure 2 (Source_Data_Figure_2.zip), Extended Data Figure 1 (Source_Data_Extended_Data_Figure_1.zip), Extended Data Figure 2 (Source_Data_Extended_Data_Figure_2.zip)), and Extended Data Table1, and the dataset for the construction of Digital Brain (Source_Data_Extended_Table_1_and_Dataset_for_DB.zip). Please note that this dataset for Digital Brain is exactly the source data for Extended Data Table 1.
DOI: 10.17632/k8c3wmdj8z
title: Data for: Price Discrimination within and across EMU Markets: Evidence from French Exporters

description: The zip file contains all the codes necessary to replicate the results in the manuscript. A read me file is also contained. The data themselves are confidential but the read me file explains the procedure to be granted access.