cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29134769
title: Timing of calcification and environmental variability determine pH proxy fidelity in coastal calcifying macroalgae

description: Long-lived calcifying marine biota are increasingly used as palaeo-archives for reconstructing ocean pH. They enable exploration of the rate and magnitude of ocean acidification in shallow-water ecosystems serving as proxies for environmental pH reconstruction. However, shallow water systems often have highly variable carbonate chemistry and the impact of this on the accuracy of pH reconstructions from long-lived marine calcifiers is not known. In particular, a better understanding of the timing of calcification with respect to environmental pH cyclicity is needed. To test the fidelity of coastal environmental pH proxies, we assessed the synchronicity between calcification and in-situ diel carbonate chemistry in a tropical (One Tree Island, Great Barrier Reef, Australia) and a temperate (Loch Sween, Scotland) location using calcifying macroalgae (rhodolith forming coralline algae) as a model system. Calcification occurred primarily during daylight hours meaning a recording bias was introduced when compared to the full diel pH range (&lt;0.02 pH units). This bias resulted in pH offsets up to 0.043 pH units over the period 1860 – 2020 representing up to 34% of the projected pH change from 1860 in the tropics and up to 1.8% in temperate latitudes. Therefore, when proxy records are used to extend modern instrumental records of pH, we find that this may lead to bias, indicating daytime, nighttime and full diel pH records should be assessed separately. We suggest that temporal pH cycles should be characterised at a local scale to enable incorporation of potential biases in application of calcifying marine macroalgae to reconstruct pH change.
DOI: 10.15468/dl.z4n83y
title: Occurrence Download

description: A dataset containing 1771677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Living Specimen, Occurrence evidence)",
 "Country is one of (Cambodia, China, Hong Kong, Denmark, France, Germany, Italy, Japan, Lithuania, Macao, Netherlands, Korea, Republic of, Chinese Taipei, Viet Nam)",
 "DatasetKey is EOD – eBird Observation Dataset",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Anseriformes",
 "VerbatimScientificName is one of (Anas platyrhynchos, Spatula clypeata, Anas carolinensis, Anas acuta, Cygnus olor, Cygnus cygnus, Cairina moschata, Anser canagicus, Anas crecca, Mareca penelope, Tadorna tadorna, Cygnus columbianus, Mareca americana, Anser albifrons, Melanitta americana, Anser fabalis, Aythya fuligula, Somateria spectabilis, Spatula querquedula, Anser erythropus, Aythya collaris, Branta canadensis, Bucephala clangula, Bucephala albeola, Mareca strepera, Aythya baeri, Aythya ferina, Aix galericulata, Tadorna ferruginea, Aythya affinis, Clangula hyemalis)",
 "Year 2005-2025"
 ]
}

 The dataset includes 1771677 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015307-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11919380
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.15477709
title: 4D-CTA Images and Surface Models of Abdominal Aortic Aneurysms from Ten Patients

description: This dataset includes time-resolved 3D computed tomography angiography (4D-CTA) images of abdominal aortic aneurysms (AAA) acquired throughout the cardiac cycle from ten patients, along with ten patient-specific AAA surface models extracted from these images. The dataset was used in the study published in the Journal of Biomechanics, titled “Kinematics of Abdominal Aortic Aneurysms.” Typically, the 4D-CTA dataset for each patient contains ten electrocardiogram (ECG)-gated 3D-CTA image frames acquired over a cardiac cycle, capturing both the systolic and diastolic phases of the AAA configuration. The images were acquired at Fiona Stanley Hospital in Western Australia and provided to researchers at the Intelligent Systems for Medicine Laboratory at The University of Western Australia (ISML-UWA), where image-based AAA kinematic analysis was performed. The AAA surface models were extracted using an automated image processing pipeline comprising AI-based segmentation with PRAEVAorta software by NUREA (https://www.nurea-soft.com/), automated post-processing with the ISML-UWA in-house code, and surface model extraction using the freely available BioPARR (Biomechanics-based Prediction of Aneurysm Rupture Risk) (https://bioparr.mech.uwa.edu.au/) and 3D Slicer (https://www.slicer.org/) software packages. For method verification, the dataset also includes synthetic ground truth data generated from Patient 1’s 3D-CTA AAA image in the diastolic phase. The ground truth data includes the patient-specific finite element biomechanical model and a synthetic systolic 3D-CTA image. The synthetic systolic image was generated by warping Patient 1’s diastolic 3D-CTA image using the realistic displacement field obtained from the AAA biomechanical model. This dataset enabled the analysis of AAA wall displacement and strain throughout the cardiac cycle using a non-invasive, in vivo, image registration-based approach. The use of widely adopted open-source file formats (NRRD for images and STL for surface models) facilitates broad applicability and reusability of this dataset in AAA biomechanics studies.
DOI: 10.5281/zenodo.15477710
title: 4D-CTA Images and Surface Models of Abdominal Aortic Aneurysms from Ten Patients

description: This dataset includes time-resolved 3D computed tomography angiography (4D-CTA) images of abdominal aortic aneurysms (AAA) acquired throughout the cardiac cycle from ten patients, along with ten patient-specific AAA surface models extracted from these images. The dataset was used in the study published in the Journal of Biomechanics, titled “Kinematics of Abdominal Aortic Aneurysms.” Typically, the 4D-CTA dataset for each patient contains ten electrocardiogram (ECG)-gated 3D-CTA image frames acquired over a cardiac cycle, capturing both the systolic and diastolic phases of the AAA configuration. The images were acquired at Fiona Stanley Hospital in Western Australia and provided to researchers at the Intelligent Systems for Medicine Laboratory at The University of Western Australia (ISML-UWA), where image-based AAA kinematic analysis was performed. The AAA surface models were extracted using an automated image processing pipeline comprising AI-based segmentation with PRAEVAorta software by NUREA (https://www.nurea-soft.com/), automated post-processing with the ISML-UWA in-house code, and surface model extraction using the freely available BioPARR (Biomechanics-based Prediction of Aneurysm Rupture Risk) (https://bioparr.mech.uwa.edu.au/) and 3D Slicer (https://www.slicer.org/) software packages. For method verification, the dataset also includes synthetic ground truth data generated from Patient 1’s 3D-CTA AAA image in the diastolic phase. The ground truth data includes the patient-specific finite element biomechanical model and a synthetic systolic 3D-CTA image. The synthetic systolic image was generated by warping Patient 1’s diastolic 3D-CTA image using the realistic displacement field obtained from the AAA biomechanical model. This dataset enabled the analysis of AAA wall displacement and strain throughout the cardiac cycle using a non-invasive, in vivo, image registration-based approach. The use of widely adopted open-source file formats (NRRD for images and STL for surface models) facilitates broad applicability and reusability of this dataset in AAA biomechanics studies.
DOI: 10.5281/zenodo.14603894
title: Data from: Systematic Literature Review of Species Distribution Models for Aedes vexans (Diptera: Culicidae): An Approach to Select Environmental Input Variables

description: The data in this repository were used in the publication "Systematic Literature Review of Species Distribution Models for Aedes vexans (Diptera: Culicidae): An Approach to Select Environmental Input Variables".

review_aedes_vexans.ods



Data for literature review on Aedes vexans, except the information of used environmental variables (see environmentalVariables.ods)

Metadata for the dataset is integrated into a separate spreadsheet within the file


environmental_variables.ods



Contains information about the environmental variables used in existing species distribution models of Aedes vexans.

Metadata for the dataset is integrated into a separate spreadsheet within the file.


geographic_level_environmental_data_source.ods



Contains information about the geograhic level of the used data sources in existing models. 

Metadata for the dataset is integrated into a separate spreadsheet within the file.


all_literature_data.ods



Bibliographic details of all reviewed literature sources found in the databases webofscience, pubMed, and scops with the search term "vexans model" on the 17.04.2024


final_literature.ods



Bibliographic details of the studies included in the review

Subset from the full literature database 'all_literature_data.ods'


Code

See GitHub
DOI: 10.5281/zenodo.15114427
title: Data from: Systematic review of variable selection bias in species distribution models for Aedes vexans (Diptera: Culicidae)

description: The data in this repository were used in the publication "Systematic Literature Review of Species Distribution Models for Aedes vexans (Diptera: Culicidae): An Approach to Select Environmental Input Variables".

review_aedes_vexans.ods



Data for literature review on Aedes vexans, except the information of used environmental variables (see environmentalVariables.ods)

Metadata for the dataset is integrated into a separate spreadsheet within the file


environmental_variables.ods



Contains information about the environmental variables used in existing species distribution models of Aedes vexans.

Metadata for the dataset is integrated into a separate spreadsheet within the file.


geographic_level_environmental_data_source.ods



Contains information about the geograhic level of the used data sources in existing models. 

Metadata for the dataset is integrated into a separate spreadsheet within the file.


all_literature_data.ods



Bibliographic details of all reviewed literature sources found in the databases webofscience, pubMed, and scops with the search term "vexans model" on the 17.04.2024


final_literature.ods



Bibliographic details of the studies included in the review

Subset from the full literature database 'all_literature_data.ods'


review_protocol.ods



protocol of the systematic review process


Code

See GitHub
DOI: 10.15468/dl.sd9gsf
title: Occurrence Download

description: A dataset containing 1807 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albizia gummifera (J.F.Gmel.) C.A.Sm."
 ]
}

 The dataset includes 1807 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015311-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45h8qe
title: Occurrence Download

description: A dataset containing 1982230 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is United Arab Emirates"
 ]
}

 The dataset includes 1982230 records from 392 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015308-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15494921
title: pGG01 vector

description: Plasmid for Golden Gate cloning with BsaI containing hexa-histidine tag and TEV cleavage site
DOI: 10.5281/zenodo.15494922
title: pGG01 vector

description: Plasmid for Golden Gate cloning with BsaI containing hexa-histidine tag and TEV cleavage site
DOI: 10.15468/dl.bbda44
title: Occurrence Download

description: A dataset containing 37828 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Mosquito Alert Dataset"
 ]
}

 The dataset includes 37828 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015312-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.58145/akf/wkjcxu
title: Replication Data for: Magic potion? No! It’s all you! The placebo effect on physical fitness in adolescents

description: Data for the study titled ,,Magic potion? No! It’s all you! The placebo effect on physical fitness in adolescents"
DOI: 10.5281/zenodo.15494935
title: Efficient periodic density functional theory calculations of charged molecules and surfaces using Coulomb kernel truncation
DOI: 10.5281/zenodo.15494936
title: Efficient periodic density functional theory calculations of charged molecules and surfaces using Coulomb kernel truncation
DOI: 10.15468/dl.jg944x
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Polyachyrus Lag."
 ]
}

 The dataset includes 261 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015315-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15083059
title: Ultrafast tunable photonic integrated Pockels extended-DBR laser

description: Available data for "Ultrafast tunable photonic integrated extended-DBR Pockels laser", published in Nature Photonics. 

DOI of original paper: https://doi.org/10.1038/s41566-025-01687-0
DOI: 10.5281/zenodo.15083060
title: Ultrafast tunable photonic integrated Pockels extended-DBR laser

description: Available data for "Ultrafast tunable photonic integrated extended-DBR Pockels laser", published in Nature Photonics. 

DOI of original paper: https://doi.org/10.1038/s41566-025-01687-0
DOI: 10.15468/dl.bkhxu4
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhagoletis pomonella (Walsh, 1867)"
 ]
}

 The dataset includes 436 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015313-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15057134
title: CLN5 deficiency impairs glucose uptake and uncovers PHGDH as a potential biomarker in Batten disease

description: This record contains raw data related to the article "CLN5 deficiency impairs glucose uptake and uncovers PHGDH as a potential biomarker in Batten disease”.In order to request the data you need to contact Dr. Maria Marchese at the following email: maria.marchese@fsm.unipi.it
DOI: 10.5281/zenodo.15057135
title: CLN5 deficiency impairs glucose uptake and uncovers PHGDH as a potential biomarker in Batten disease

description: This record contains raw data related to the article "CLN5 deficiency impairs glucose uptake and uncovers PHGDH as a potential biomarker in Batten disease”.In order to request the data you need to contact Dr. Maria Marchese at the following email: maria.marchese@fsm.unipi.it
DOI: 10.5281/zenodo.14890506
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.5281/zenodo.14890507
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.5281/zenodo.15316369
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.5281/zenodo.15321553
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.5281/zenodo.15341319
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.5281/zenodo.15493551
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.5281/zenodo.15494944
title: AMSunda: A Novel Dataset for Sundanese Information Retrieval

description: The AMSunda dataset was introduced as the first resource designed explicitly for fine-tuning and evaluating embedding models in the Sundanese language. AMSunda dataset consists of two dataset types: (1) triplet data containing a query passage, a positive, and a negative response aimed for fine-tuning embedding models, and (2) BEIR-compatible data structured for evaluating embedding models on retrieval tasks.
DOI: 10.15468/dl.4jyr9z
title: Occurrence Download

description: A dataset containing 779 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Georgia",
 "Geometry POLYGON((44.09305 41.97602,44.07914 41.99546,44.07664 42.0042,44.00029 42.04309,43.94248 42.07324,43.86756 42.07877,43.80886 42.04916,43.78228 42.03186,43.74589 41.99065,43.73072 41.94712,43.72876 41.90519,43.73964 41.88699,43.75873 41.88218,43.77764 41.89591,43.7598 41.91358,43.81404 41.91465,43.86238 41.90715,43.91483 41.90947,43.94159 41.92606,43.96942 41.94426,44.04417 41.95657,44.09305 41.97602))"
 ]
}

 The dataset includes 779 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015316-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/xiu1ms
title: DARA-Eval

description: Official dataset for DARA-Eval.
DOI: 10.5281/zenodo.15494917
title: Effect of SO2 and SO3 Exposure to Cu-CHA on Surface Nitrate and N2O Formation for NH3−SCR

description: This is the dataset for the computational calculations in the following publication:ACS Eng. Au 2024, 4, 4, 405–421The zip file contains the final structures in Figure 1 and 2 as cif files
DOI: 10.5281/zenodo.15494918
title: Effect of SO2 and SO3 Exposure to Cu-CHA on Surface Nitrate and N2O Formation for NH3−SCR

description: This is the dataset for the computational calculations in the following publication:ACS Eng. Au 2024, 4, 4, 405–421The zip file contains the final structures in Figure 1 and 2 as cif files
DOI: 10.6084/m9.figshare.28997486
title: FreKAQAr Data

description: Data for the cross cultural adaptation of FreKAQ into Arabic language
DOI: 10.15468/dl.qrw5sn
title: Occurrence Download

description: A dataset containing 489 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albizzia julibrissin Durazz."
 ]
}

 The dataset includes 489 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015318-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r94uzk
title: Occurrence Download

description: A dataset containing 2295 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Korea, Republic of",
 "TaxonKey is Bubulcus coromandus (Boddaert, 1783)"
 ]
}

 The dataset includes 2295 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015309-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2upcvf
title: Occurrence Download

description: A dataset containing 11279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Polyalthia Blume"
 ]
}

 The dataset includes 11279 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015319-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15165461
title: The impact of tree mortality and post-disturbance management on insect diversity in temperate forests: Insights from a replicated experiment - code

description: Code to standardize metabarcoding data, calculate standardized taxonomic and phylogenetic diversity and to create a phylogenetic tree based on insect metabarcoding sequences.
DOI: 10.5281/zenodo.15165462
title: The impact of tree mortality and post-disturbance management on insect diversity in temperate forests: Insights from a replicated experiment - code

description: Code to standardize metabarcoding data, calculate standardized taxonomic and phylogenetic diversity and to create a phylogenetic tree based on insect metabarcoding sequences.
DOI: 10.3886/e185321
title: Code and Non-Confidential Data for: "Health Care Centralization: The Health Impacts of Obstetric Unit Closures in the US"

description: This is the replication package for the article entitled "Health Care Centralization: The Health Impacts of Obstetric Unit Closures in the US".
description: All births in the United States.
DOI: 10.3886/e185321v1-179402
title: Code and Non-Confidential Data for: "Health Care Centralization: The Health Impacts of Obstetric Unit Closures in the US"

description: This is the replication package for the article entitled "Health Care Centralization: The Health Impacts of Obstetric Unit Closures in the US".
description: All births in the United States.