cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-2ad-cx47
title: Urine metabolites changes induced by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

description: &lt;p&gt;Metabolites profiling of urine samples. The samples were collected for the INSIDE explorative dietary study. The study was aimed to characterize the impact of fermented food may have on the small intestinal microbiota and systematically.&lt;/p&gt;
description: Date Submitted: 2021-12-02
description: INSIDE project: Ileostomy-cohort-study-with-two-probiotics, a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients
DOI: 10.17026/dans-xk3-wsph
title: Performance of the Sysmex Infection Manager System (IMS) to differentiate between common causes of febrile illness in Southeast Asia

description: &lt;p&gt;This dataset presents the results from a prospective diagnostic study in which the diagnostic performance of the Sysmex Infection Manager System (IMS), which is a novel algorith equipped on a Sysmex hematology analyzer, was tested on a cohort of Indonesian adult patients presenting to a health facility with an acute febrile illness.&lt;br&gt;All patients were evaluated using a structured diagnostic protocol. The total cohort was 600 patients of whom 137 were excluded. The IMS was first trained on the first 200 patients and subsequently validated on the complete cohort consisting of 463 patients. The etiology of the febrile illness was determined using a combination of clinical investigations, as well as a set of laboratory and radiology examinations. The performance of the IMS was compared to that of the biomarkers C-reactive protein (CRP) and procalcitonin (PCT)&lt;/p&gt;
DOI: 10.17026/dans-xns-5c7c
title: Data underlying the publication: Historical reconstruction of sturgeon (Acipenser spp.) spatiotemporal distribution and causes for their decline in North-Western Europe

description: &lt;p&gt;This data set has data on historically reported landings and sales of the anadromous sturgeons, Acipenser sturio and A. oxyrinchus, in NW-Europe (especially in the Rhine, Meuse, Scheldt and Ems rivers and the North Sea), in light of evaluating the possibilities for their reintroduction.&lt;/p&gt;
description: Date Submitted: 2022-02-14
DOI: 10.17026/dans-xkg-4nbc
title: Data underlying the publication "Plant quantity affects development and reproduction of a gregarious butterfly more than plant quality"

description: &lt;p&gt;The larvae of insect herbivores feed on plants that may vary qualitatively and/or quantitatively during their immature development. In this study we investigated the effects of both quantitative and qualitative differences on insect performance in an insect herbivore (gregarious Pieris brassicae caterpillars) that can be confronted with both variation in plant nutrition and plant availability during immature development. In the first experiment we compared larval performance until pupation of caterpillar on plants that differed in their nutritional quality. Plants (Brassica nigra) had been exposed to aphid infestation, pathogen infection or were in or outbred, factors that have previously been shown to affect nutritional quality of plants including B. nigra. These three factors had no or only marginal effects on pupal mass and development time until pupation. We continued by examining the effects of quantitative food constraints during immature development on pupal mass, which correlated strongly with adult size. Female pupal mass and fecundity were negatively correlated with the duration of starvation during larval development. Starvation of the male mating partner had no significant effect on female reproduction. The results showed that caterpillars of P. brassicae were more affected by quantitative than by qualitative constraints in terms of pupal mass, which strongly correlated with female reproduction.&lt;/p&gt;
description: Date Submitted: 2022-12-07
DOI: 10.17026/dans-2ap-7bnu
title: The Ghosts of HeLa: How cell line misidentification contaminates the scientific literature
title: Data search file

description: &lt;p&gt;Web of Science search key to reproduce search results in the publication via the Web of Science online interface.&lt;/p&gt;&lt;p&gt;Abstract&lt;br&gt;While problems with cell line misidentification have been known for decades, an unknown number of published papers remains in circulation reporting on the wrong cells without warning or correction. Here we attempt to make a conservative estimate of this ‘contaminated’ literature. We found 32,755 articles reporting on research with misidentified cells, in turn cited by an estimated half a million other papers. The contamination of the literature is not decreasing over time and is anything but restricted to countries in the periphery of global science. The decades-old and often contentious attempts to stop misidentification of cell lines have proven to be insufficient. The contamination of the literature calls for a fair and reasonable notification system, warning users and readers to interpret these papers with appropriate care.&lt;/p&gt;
DOI: 10.17026/dans-zdr-kbjb
title: Geocomputational Workflows for Analysing Spring Plant Phenology in Space and Time

description: &lt;p&gt;The dataset is comprised of leafing and flowering data collected across the continental United States from 1956 to 2014 for purple common lilac ( Syringa vulgaris), a cloned lilac cultivar (S. x chinensis ‘Red Rothomagensis’) and two cloned honeysuckle cultivars ( Lonicera tartarica ‘Arnold Red’ and L. korolkowii ‘Zabeli’). Applications of this rich legacy dataset range from detecting regional weather patterns to understanding the impacts of global climate change on the onset of spring at the national scale. While minor changes in methods have occurred over time, and some documentation is lacking, the dataset has proven robust in combination with climatic data for detecting spatio-temporal changes in the onset of spring.&lt;/p&gt;
DOI: 10.17026/dans-2cf-ybgc
title: Data from: Integrating fitness components reveals that survival costs outweigh other benefits and costs of group living in two closely related species

description: &lt;p&gt;Data from: Integrating fitness components reveals that survival costs outweigh other benefits and costs of group living in two closely related species. The aim here is to quantify the effect of the group size an individual experiences in a given year on an integrative measure of fitness in two closely related fairy-wrens (Malurus elegans and M. cyaneus). Elegans data were collected in Smithbrook Nature Reserve in Western Australia (34°20′S, 116°10′E) from 2008 to 2016. The main study area comprised 58-70 territories in which &gt;99% of the adult birds were individually colour-banded. Those territories were checked at least fortnightly for group composition and survival throughout the breeding season (Oct-Jan) and once a nest was located this was monitored bi-weekly. Nestlings were blood sampled when at least two days old to determine their sex and parentage using 7 or 8 hypervariable microsatellite markers as described in Brouwer et al. (2011). Cyaneus data were collected at the Australian National Botanic Gardens in Canberra (35°16′S, 149°06′E) from 1993 to 2014. The study area comprised 55-90 territories, in which &gt;99% of the adult birds were individually colour-banded. During the breeding season (Sept-Mar) the complete nesting history and performance of offspring was determined by daily census. Nestlings were blood sampled when eight days old to determine their sex and parentage using 7 or 8 hypervariable microsatellite markers (Double et al. 1997).&lt;/p&gt;
DOI: 10.57745/mynedf
title: index.qmd

description: main article notebook
DOI: 10.17026/dans-xny-xaed
title: Data from: Indirect fitness benefits through extra-pair mating are large for an inbred minority, but cannot explain widespread infidelity among red-winged fairy wrens

description: &lt;p&gt;Data from: Indirect fitness benefits through extra-pair mating are large for an inbred minority, but cannot explain widespread infidelity among red-winged fairy wrens. Here, we present a comprehensive study which tests whether females gain indirect benefits from EPP in the cooperatively breeding red-winged fairy-wren (Malurus elegans). To compare performance of extra-pair and within-pair offspring, we use an integrated fitness measure that combines several fitness components: first year and adult survival, recruitment to a breeding position and reproductive success within the first three years of life. Such an integrated fitness measure accounts for the facts that some components of fitness are more important than others and that singling out specific life-stages may under- or overestimate the overall benefits of EPP on lifetime fitness. Data were collected for seven cohorts of offspring hatched during the 2008 to 2014 seasons which were monitored up to and including 2016 in Smithbrook Nature Reserve, Western Australia (34°20’S, 116°10’E). The main study area comprised ~65 territories in which &gt; 99% of the adult birds were individually colour-banded. In this area each territory was checked at least fortnightly for group composition, survival and breeding activity throughout the breeding season (October-January). In addition, in another ~30 territories surrounding the main area 80% of the birds were colour-banded and nest searching was done opportunistically.&lt;/p&gt;
description: &lt;p&gt;Depositor provided data files in .txt format. DANS provided the .csv versions of these files.&lt;/p&gt;
DOI: 10.57745/z7dtz6
title: _quarto.yml

description: Quarto configuration file
DOI: 10.17026/dans-zku-6324
title: Modeling Schistosoma japonicum infection under Pure Specification Bias: Impact of Environmental Drivers of Infection

description: &lt;p&gt;These data set contains the survey information about positive cases of Schistosoma japonicum in the region of Mindanao, The Philippines. It also contains covariate data at city and barangay level extracted from the region of Mindanao. The data set also contains the models used in OpenBUGS.&lt;/p&gt;
description: Date: 2008-12-31
DOI: 10.57745/6uymaf
title: .keep

description: Placeholder for downloaded data folder
DOI: 10.57745/grnlqs
title: references.bib

description: Bibliography
DOI: 10.57745/nrssqw
title: functions.R

description: Custom functions for the analysis
DOI: 10.57745/tmtnn7
title: DESCRIPTION

description: R Package description
DOI: 10.17026/dans-xd7-g3z5
title: Relative Contributions of Humoral and Nerve Nociceptive Inputs to Postoperative Central Sensitisation and Pain: Interaction of Extended Perioperative COX-2 Inhibition and Local Anaesthetic Blockade for Breast Malignancy Surgery

description: &lt;p&gt;Study on the effect of the interaction of cyclooxygenase-2 (COX-2) inhibition (started preoperatively and continued 5 days into the postoperative period) and extended local anaesthetic blockade via paravertebral block on postoperative central sensitisation after breast surgery for malignancy.&lt;/p&gt;&lt;p&gt;Background&lt;br&gt;Persistent pain is a challenging clinical problem after breast cancer treatment. After surgery, inﬂammatory pain and nociceptive input from nerve injury induce central sensitization which may play a role in the genesis of persistent pain. Using quantitative sensory testing, we tested the hypothesis that adding COX-2 inhibition to standard treatment reduces hyperalgesia after breast cancer surgery. A secondary hypothesis was that patients developing persistent pain would exhibit more postoperative hyperalgesia.&lt;/p&gt;&lt;p&gt;Methods&lt;br&gt;138 women scheduled for lumpectomy/mastectomy under general anesthesia with paravertebral block were randomized to COX-2 inhibition (2x40mg parecoxib on day of surgery, thereafter 2x200mg celecoxib/day until day five) or placebo. Preoperatively and 1, 5, 15 days and 1, 3, 6, 12 months postoperatively, we determined electric and pressure pain tolerance thresholds in dermatomes C6/T4/L1 and a 100mm VAS score for pain. We calculated the sum of pain tolerance thresholds and analyzed change in these versus preoperatively using mixed models analysis with factor medication. To assess hyperalgesia in persistent pain patients we performed an additional analysis on patients reporting VAS&gt;30 at 12 months.&lt;/p&gt;&lt;p&gt;Results&lt;br&gt;48 COX-2 inhibition and 46 placebo patients were analyzed in a modified intention to treat analysis. Contrary to our primary hypothesis, change in the sum of tolerance thresholds in the COX-2 inhibition group was not different versus placebo. COX-2 inhibition had an effect on pain on movement at postoperative day 5 (p&lt;0.01). Consistent with our secondary hypothesis, change in sum of pressure pain tolerance thresholds in 11 patients that developed persistent pain was negative versus patients without pain (p&lt;0.01) from day 5 to 1 year postoperatively.&lt;/p&gt;&lt;p&gt;Conclusions&lt;br&gt;Perioperative COX-2 inhibition has limited value in preventing sensitization and persistent pain after breast cancer surgery. Central sensitization may play a role in the genesis of persistent postsurgical pain.&lt;/p&gt;
DOI: 10.57745/dptmwu
title: LICENCE.txt

description: code source licence
DOI: 10.57745/i7jtay
title: _targets.yaml

description: targets configuration file
DOI: 10.57745/sfndhc
title: tmja-2019-corrige.gpkg

description: Corrected data in geospatial format
DOI: 10.17026/dans-xf4-c9mh
title: Serological response to three alternative series of hepatitis B revaccination (Fendrix, Twinrix, and HBVaxPro-40) in healthy non-responders:
title: a multicentre, open-label, randomised, controlled, superiority trial

description: &lt;p&gt;This dataset originates from the RESPONS trial. The objective of the trial was to establish the immunogenicity in HBV non-responders of a three-dose revaccination series at a 4 week interval with Twinrix (GlaxoSmithKline), Fendrix (GlaxoSmithKline), or HBVaxPro-40 (Merck Sharp & Dohme) compared with a standard revaccination series of three Engerix-B (with 20 μg HBsAg) or HBVaxPro-10 (with 10 μg HBsAg). In this revaccination trial, after enrolment, we collected data about age, sex, body-mass index, smoking habits, country of birth, general information on medical conditions, and primary vaccination schedule. Furthermore, data for timing between vaccinations and the interval between last vaccination and post-vaccination antibody concentrations were collected. These data were provided by participating centres originating from their medical records.&lt;br&gt;Important notice: 56 participants did not provide further consent for the reuse of data in future studies. Therefore in this dataset the data of 56 participants is not shown.&lt;/p&gt;
DOI: 10.57745/guz3f0
title: tmja-2019-corrige.csv

description: Corrected data in tabular format (no geometry)
DOI: 10.17026/dans-zgg-6wuj
title: Data for: Beyond signal functions in global obstetric care: Using a clinical cascade to measure emergency obstetric readiness

description: &lt;p&gt;We compare emergency readiness using the signal functions model and a novel clinical cascade. The cascades model readiness as the proportion of facilities with resources to identify the emergency (stage 1), treat it (stage 2) and monitor-modify therapy (stage 3). Data were collected from 44 Kenyan clinics as part of an implementation trial.&lt;/p&gt;&lt;p&gt;Associated publication: Cranmer, J.N., et.al. Beyond Signal Functions in Global Obstetric Care: Using a Clinical Cascade to Measure Emergency Obstetric Readiness. https://doi.org/10.1371/journal.pone.0184252.&lt;/p&gt;
description: Date Accepted: 2017-08-23
DOI: 10.57745/eviysr
title: _targets.R

description: targets workflow description
DOI: 10.57745/h7pgxd
title: tmja-2019-analysis.qmd

description: Notebook for exploratory data analysis, correction and cartography steps
DOI: 10.57745/sy95hu
title: AUTHORS

description: Author list
DOI: 10.57745/rni6bq
title: README_9IDG31_2025.md

description: :unav
DOI: 10.57745/c2zu1o
title: _quarto.yml

description: Quarto configuration file
DOI: 10.57745/0a8d6c
title: tmja-2019-analysis.qmd

description: Notebook for exploratory data analysis, correction and cartography steps
DOI: 10.57745/xqfhjq
title: renv.lock

description: R packages version files
DOI: 10.57745/excaap
title: README_9IDG31_2025.md

description: Dataset README
DOI: 10.57745/9idg31
title: Trafic moyen journalier annuel sur le réseau routier national 2019 - données corrigées

description: Le trafic moyen journalier annuel (TMJA) d'une section routière est obtenu en calculant la moyenne sur une année du nombre de véhicules circulant sur cette section, tous sens confondus, au cours d'une journée. Le jeu de données 2019 original comportant des erreurs sur la variable ratio_PL, ce jeu de données est la version corrigée accompagnée d'un notebook R documentant les traitements correctifs appliqués. Le jeu de données tmja-2019-corrige.gpkg a été produit afin de pouvoir cartographier les flux routiers poids lourds en 2019.
DOI: 10.17026/dans-zd5-bp24
title: Altijd Blijven Sporten 2019/2020 (databestand)
title: Always Stay Active 2019/2020 (dataset)

description: &lt;p&gt;The data was collected for the ABS: Always Stay Active! study funded by ZonMW Sportinnovator (grant no.: 538001037). The original aim of this study was to test the extent to which two different motivational stimuli affected runners who enrolled for the 7Hills running event for the first time with respect to: (1) training frequency and training volume; (2) the likelihood to start at the 7Hills running event; (3) self-declared motivations for running activities; (4) the likelihood to register for subsequent running events. Respondents filled in a web-survey three times: (t1 pre-treatment; t2 treatment; t3 post-treatment).&lt;br&gt;Due to the outbreak of the Covid-19 pandemic in 2020, we broadened the goal of this study and included in the third wave additional questions to assess how Covid-19 and the restriction measures taken affected running behaviour and motivation.&lt;/p&gt;
description: &lt;p&gt;Always Stay Active 2019/2020 (dataset)&lt;/p&gt;
description: Date Submitted: 2020-10-15
DOI: 10.17026/dans-275-n9gu
title: Satisfaction with obstetric care

description: &lt;p&gt;Focus group research to measure satisfaction with antenatal, birthing and maternity care of women with a low-educated native Dutch and non-western ethnic background.&lt;/p&gt;&lt;p&gt;This research focuses on the experiences of women with antenatal, birthing and maternity care living in deprived areas in the city of Rotterdam, the Netherlands. We used purposive sampling to assure that participants in the focus group interviews represented the important target groups of these deprived neighbourhoods.&lt;br&gt;We employed active recruitment methods, including by ‘verbal advertising’ and through social networks. Firstly, the primary researcher visited: (a) peer education meetings organised by the community health workers, (b) primary schools during coffee breaks, (c) secondary schools and a community college during health(care) educational lessons and (d) neighbourhood community centres. Participants recruited through these methods were asked to connect us with other interested women (‘snow ball sampling’ strategy).&lt;/p&gt;&lt;p&gt;We conducted 19 semi-structured focus-group interviews with 18 women with a Turkish background, 19 women with a Moroccan background, 10 women with a Surinamese background, 12 women with an Antillean background, 20 women with a Cape Verdean background, 12 women with a native Dutch background, and 9 adolescent and 6 pregnant women with various ethnic backgrounds. Each focus group consisted of participants with the same ethnic background, including adolescents and pregnant women.&lt;/p&gt;
DOI: 10.17026/dans-zhf-xrnd
title: Healthy pregnancy 4 All-2: Interconception Care in Preventive Child Health Care Services

description: &lt;p&gt;Healthy Pregnancy 4 All-2: een sluitende aanpak door geboortezorg en jeugd(gezondheid)zorg&lt;/p&gt;&lt;p&gt;Healthy Pregnancy 4 All is een project in gemeenten met meer achterstandsproblematiek en meer ongunstige zwangerschapsuitkomsten dan gemiddeld. De subafdeling Verloskunde en Prenatale Geneeskunde van het Erasmus MC voert dit project uit, samen met tal van partners in het land en in de deelnemende gemeenten. Het project wordt mogelijk gemaakt door een subsidie van het ministerie van VWS.&lt;/p&gt;&lt;p&gt;Interconceptiezorg&lt;br&gt;Interconceptiezorg is gericht op het informeren en begeleiden van vrouwen om hen optimaal voor te bereiden op een volgende zwangerschap. In de periode tussen twee opeenvolgende zwangerschappen (de interconcepti-onele periode) kunnen kwetsbare gezinnen opgespoord en begeleid worden naar een zo gezond mogelijke start van een nieuwe zwangerschap.&lt;/p&gt;&lt;p&gt;Bijna alle ouders komen met hun jonge kind(eren) naar de Jeugdgezondheidszorg (JGZ). Daarom is de JGZ een kanaal om jonge ouders met een mogelijke nieuwe kinderwens te bereiken. Binnen dit project wordt met ouders, die met hun kind van 6 maanden of ouder bij het consultatiebureau komen, een eventuele kinderwens besproken. Zij worden geattendeerd op het belang en de beschikbaarheid van interconceptiezorg&lt;/p&gt;&lt;p&gt;Voor evaluatie onderzoek is gedurende een bepaalde periode bijgehouden of de mogelijkheid van interconceptiezorg is besproken gedurende het 6 maanden consult bij de JGZ. Indien mogelijk zijn er ook aanvullende gegevens verzameld over dit consult.&lt;br&gt;Daarnaast zijn vrouwen tijdens dit consult benaderd voor vragenlijst onderzoek (2 vragenlijsten) en zijn zorgverleners betrokken bij het project 2 keer benaderd met een vragenlijst. Ook zorgverleners buiten het project zijn benaderd met een vragenlijst.&lt;/p&gt;
DOI: 10.17026/dans-xex-hzww
title: CHECK (Cohort Hip & Cohort Knee) data of baseline to 5 years follow-up
title: Data files of T0, T1, T2, T3, T4 and T5

description: &lt;p&gt;The Cohort Hip & Cohort Knee (CHECK) is a population-based observational multicenter cohort study of 1002 individuals with early symptomatic osteoarthritis (OA) of knee and/or hip in the Netherlands. The participants were followed for 10 years. The study evaluated clinical, radiographic and biochemical variables in order to establish the course, prognosis and underlying mechanisms of early symptomatic osteoarthritis. The Dutch Artritis Foundation initiated and funded this inception cohort.&lt;/p&gt;&lt;p&gt;This dataset covers the data collection from baseline to 5 years follow-up: T0, T1, T2, T3, T4 and T5. All data files include the variable 'Subject identification number’. Included is a Kellgren-Lawrence radiographic classification covering T0,T2,T5, T8 and T10. Also X-rays of hips and knees of baseline, 2 and 5 year follow-up visits are available. More information on the variables can be found in the documentation.&lt;/p&gt;&lt;p&gt;In the description file you can find an overview of the data belonging to this dataset and more information about the format and kind of view of the X rays.&lt;/p&gt;&lt;p&gt;See relations for other CHECK datasets and for the overview 'Thematic collection: CHECK (Cohort Hip & Cohort Knee)'.&lt;/p&gt;
description: Date Submitted: 2015-12-24
description: &lt;p&gt;2019-12-20: a new data file on X-Ray data 'Rontgen_opT10_20191118' was added to the dataset.&lt;/p&gt;&lt;p&gt;2017-10-04: A data file on X-Ray ratings has been added and the variable guide is replaced by a new version (6) with information on this data file. Please note the variable names start with 'RontgT10_' in the data file.&lt;/p&gt;&lt;p&gt;2017-07-12: Due to an error a data file has been replaced. CHECK_T0_DANS_ENG_20151211.sav is now replaced by CHECK_T0_DANS_ENG_20161128.sav.&lt;/p&gt;&lt;p&gt;---&lt;/p&gt;&lt;p&gt;The informed consent statements of the participants are stored at the participating hospitals.&lt;/p&gt;&lt;p&gt;The .dta (STATA) and .por (SPSS) files are conversions of the original .sav (SPSS) files.&lt;/p&gt;
description: In order to link subject identification numbers to the baseline images, please refer to the X-ray data files T0.zip to T0-24.zip.