cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26771680
title: <b>Magnetoelectric Nanodiscs Enable Wireless Transgene-Free Neuromodulation</b>

description: <b>Datasets for figures in paper titled 'Magnetoelectric Nanodiscs Enable Wireless Transgene-Free Neuromodulation'</b>
DOI: 10.6084/m9.figshare.27301509
title: GO analysis

description: Transcriptome profiling across 11 different tissues in Pisum sativum.
DOI: 10.17632/gnjkj3bhg5.1
title: Half Moon Bay California Tide Pool Quadrats

description: Quadrats taken from Maverick's Beach and Fitzgerald Marine Reserve at Half Moon Bay California. Each row is an individual, or species observed within a quadrat which could not be counted discretely. All unique species within a quadrat are assigned a single % cover value. 

Sites sampled:
Maverick's Beach: 7/15/21, 7/27/21, 2/27/22
Fitzgerald Marine Reserve: 10/20/21, 12/4/21
DOI: 10.4231/d34m91b6s
title: TEST 12L - RCK01 : Part 1 - 9m radius centrifuge experiment on clayey levee behavior under ground motions

description: Test 12L and the following test 13L are Part 1 and Part 2 of a unique experiment which was cataloged as RCK01 in the records of the centrifuge facility @ UC Davis. Test 12L employs the large scale (9m radius) centrifuge, and models a prototype scale 5 m height levee on top of 11 m of peat. The levee is made of clayey, and the container was spun to 57 g, then several ground motions were applied in order to investigate the seismic performance of the structure. Due to the possibility of failure in the peat from the increased stressed at higher g levels, the model was spun slowly to increased the g field. Thus, 2 spinning days were required to complete this Part 1 of the experiment. In the following Part 2 the clayey levee will be substituted with a sandy levee.
DOI: 10.5067/wmt31rkexk8i
title: MERRA-2 tavgM_2d_chm_Nx: 2d,Monthly mean,Time-Averaged,Single-Level,Assimilation,Carbon Monoxide and Ozone Diagnostics V5.12.4
DOI: 10.5258/soton/wp00698
title: Estimates of 2020 total number of people per grid square, adjusted to match the corresponding UNPD 2020 estimates and broken down by gender and age groupings, produced using Built-Settlement Growth Model (BSGM) outputs

description: Estimates of 2020 total number of people per grid square, adjusted to match the corresponding UNPD 2020 estimates and broken down by gender and age groupings, produced using Built-Settlement Growth Model (BSGM) outputs.
DOI: 10.5281/zenodo.11499273
title: Crystallographic Preferred Orientation of Phase D at High Pressure and Temperature: Implications for Seismic Anisotropy in the Mid-mantle

description:     The dataset includes the data of Crystallographic Preferred Orientation of phase D aggregates in this study. It include electron backscatter diffraction (EBSD) mapping data in .cpr and .crc file and transmission two-dimensional X-ray diffraction (2D-XRD) patterns acquired at BL04B1 beamline of synchrotron facility of SPring-8, Hyogo, Japan.
DOI: 10.5281/zenodo.13839189
title: Data and code associated with Fernández_García et al 2024 Biogeosciences

description: These files supplement the Manuscript and Supplementary materials presented in the following paper: Palaeoecology of ungulates in northern Iberia during the LatePleistocene through isotopic analysis of teeth  by Monica Fernández-Garcia, Sarah Pederzani, Kate Britton, Lucia Agudo-Pérez, Andrea Cicero, Jeanne Geiling, Joan Daura, Montserrat Sanz and Ana B. Marín-Arroyo under review in the Biogeosciences journal.
DOI: 10.5281/zenodo.4478921
title: Data Set Knowledge Graph (DSKG)

description: We present the <strong>Data Set Knowledge Graph (DSKG.org)</strong>, an <strong>RDF</strong> <strong>dataset about datasets </strong>that are <strong>linked to publications</strong> (modeled in the Microsoft Academic Knowledge Graph, MAKG) that mention the datasets. The metadata of the datasets is based on datasets that are registered in <strong>OpenAIRE</strong> and <strong>Wikidata</strong>. <strong>What exactly do we provide?</strong> Periodically updated <strong>RDF dump files</strong> of the Data Set Knowledge Graph. <strong>URI resolution</strong> of the Data Set Knowledge Graph within the Linked Open Data. A publicly accessible <strong>SPARQL endpoint</strong> containing the latest Dataset Knowledge Graph data. <strong>How big is the Dataset Knowledge Graph?</strong> The Dataset Knowledge Graph models, among others, 2,208 datasets from all scientific disciplines 813,551 links to 634,803 unique papers 1,169 authors of datasets 208 ORCID IDs. <strong>Potential use cases:</strong> Use the DSKG for the development of semantic search engines (e.g. use the metadata of the linked publications of the datasets for advanced search capabilities) Easier data integration by using the RDF standard vocabulary DCAT and by linking resources to other data sources (e.g., combining the DSKG with other dataset collections in RDF). Data analysis to measure and award the provisioning of datasets (e.g., determine the scientific influence of datasets and authors).
DOI: 10.57746/eo.01gs73b05w4k4mgk452amabay7
title: TRMM/PR L2 Surface Cross Section
DOI: 10.6084/m9.figshare.25219751.v1
title: SoS_Atlantis_inputs.zip

description: Atlantis input files
DOI: 10.6084/m9.figshare.25554837.v1
title: Ultima HG004 (2022)

description: HG004 Ultima VCF 40x coverage from 2022from https://s3.amazonaws.com/ultima-selected-1k-genomes-vcf-only/DeepVariant_vcfs/HG007_004731-UGAv3-33-CATGCAGCGCTAATGA.vcf.gz
DOI: 10.6084/m9.figshare.26170150
title: Data file4

description: Summary of gene annotation of the strain PSCN1
DOI: 10.6084/m9.figshare.26170171
title: Data file5

description: Characteristics of 45 strains of <i>P.stewartii </i>and one strains of <i>P.agglomerans</i> used in this study
DOI: 10.6084/m9.figshare.26935399
title: Supplementary Material for: Clinical variability of Shashi-Pena syndrome: A novel ASXL2 variant associated with overgrowth and minor neurodevelopmental features.

description: Introduction: Shashi-Pena syndrome (SHAPNS) is a rare congenital disorder characterized by macrocephaly, delayed psychomotor development with intellectual disability, hypotonia, seizures, episodic hypoglycemia, distinct facial features and glabellar nevus flammeus, caused by heterozygous variants of the ASXL2 gene. 
Case Presentation: We report on a 15-year old patient in care at our hospital since the age of 4 years presenting with minor neurodevelopmental problems, marked postnatal overgrowth without advanced bone age, and dental anomalies. 
Conclusion: Patients described in the literature with SHAPNS are reported indicating a broad spectrum of clinical manifestations. The present patient manifests an atypical presentation of SHAPNS due to a novel heterozygous ASXL2 variant. This study supports the inclusion of SHAPNS in overgrowth disorders with macrocephaly, suggesting the analysis of the ASXL2 gene even in suspected subjects with normal bone age and confirms dental anomalies as a clinical feature of this syndrome. SHAPNS could be inferred even in the absence of developmental delay or epilepsy.
DOI: 10.6084/m9.figshare.27188142
title: Supplementary Material for: Systemic factors contributing to gender differences in living kidney donation: A systematic review and meta-synthesis using the Social-Ecological Model lens

description: Background: The field of living kidney donation is profoundly gendered contributing to a predominance of women, mothers, and wives as living kidney donors (LKDs). Individual factors have traditionally been emphasized and there is a limited appreciation of relational, community, and socio-cultural influences in decision-making. We aimed to comprehensively capture existing evidence to examine the relative importance of these factors.

Methods: This was a systematic review of existing literature that has explored the motivation of different genders to become LKDs. Of the 3,188 records screened, 16 studies from 13 counties were included. Data were synthesized thematically using the Social-Ecological Model lens. 

Results: At the individual level, themes related to intrinsic motivation, thoughtful deliberation, and attitudes, fears and beliefs; however, evidence demonstrating differences between men and women was minimal. Greater variation between genders emerged along the relational (coercion from family/network, relationship with the intended recipient, self-sacrifice within the family unit and stability/acceptance within family); community (economic value and geographic proximity to recipient); and socio-cultural (gendered societal roles, social norms and beliefs, social privilege and legislation and policy) dimensions. The relative importance of each factor varied by context; cultural components were inferred in each study, and economic considerations seemed to transcend the gender divide.

Conclusions: A complex interplay of factors at relational, community, and socio-cultural levels influences gender roles, relations, and norms and manifests as gender disparities in living kidney donation. Our findings suggest that to address gender disparities in living donation, dismantling of deep-rooted systemic contributors to gender inequities is needed.
DOI: 10.6084/m9.figshare.27301509.v1
title: Differential expression analysis across distinct tissues

description: Transcriptome profiling across 11 different tissues in Pisum sativum
DOI: 10.1594/pangaea.831687
title: Macroinvertebrate abundance in tropical Andean streams, Ecuador

description: Deforestation in the tropical Andes is affecting ecological conditions of streams, and determination of how much forest should be retained is a pressing task for conservation, restoration and management strategies. We calculated and analyzed eight benthic metrics (structural, compositional and water quality indices) and a physical-chemical composite index with gradients of vegetation cover to assess the effects of deforestation on macroinvertebrate communities and water quality of 23 streams in southern Ecuadorian Andes. Using a geographical information system (GIS), we quantified vegetation cover at three spatial scales: the entire catchment, the riparian buffer of 30 m width extending the entire stream length, and the local scale defined for a stream reach of 100 m in length and similar buffer width. Macroinvertebrate and water quality metrics had the strongest relationships with vegetation cover at catchment and riparian scales, while vegetation cover did not show any association with the macroinvertebrate metrics at local scale. At catchment scale, the water quality metrics indicate that ecological condition of Andean streams is good when vegetation cover is over 70%. Further, macroinvertebrate community assemblages were more diverse and related in catchments largely covered by native vegetation (&gt;70%). Overall, our results suggest that retaining an important quantity of native vegetation cover within the catchments and a linkage between headwater and riparian forests help to maintain and improve stream biodiversity and water quality in Andean streams affected by deforestation. Also, this research proposes that a strong regulation focused to the management of riparian buffers can be successful when decision making is addressed to conservation/restoration of Andean catchments.
description: Dissolved oxygen and biological oxygen demand was originally given in mg/l and was recalculated to µmol/l by multiplying by 31.25. Macroinvertebrate abundance: qualitative sampling in # of individuals at different habitats.This work was funded by the Secretaría de Educación Superior, Ciencia, Tecnología e Innovación of Ecuador (SENESCYT) and by the Deutsche Forschungsgemeinschaft DFG in the frame of the project FOR816 "Biodiversity and Sustainable Management of a Megadiverse Mountain Ecosystem in South Ecuador".
description: Supplement to: Iñiguez Armijos, Carlos Alberto; Leiva, Adrian; Frede, Hans-Georg; Hampel, Henrietta; Breuer, Lutz (2014): Deforestation and Benthic Indicators: How Much Vegetation Cover Is Needed to Sustain Healthy Andean Streams? PLoS ONE, 9(8), e105869
DOI: 10.5281/zenodo.10245983
title: Arctic Climate Response to European Radiative Forcing: A Deep Learning Study on Circulation Pattern Changes (control run daily dataset)

description: 30-year Control run with MPI-ESM1.2 coupled atmosphere-ocean–land surface model with preindustrial boundary and initial condition (for more information see the paper)
DOI: 10.5281/zenodo.13621762
title: Data and Software for Astrometric Binary Classification

description: The following data set and software accompany the paper "Astrometric Binary Classification Via Artificial Neural Networks" by Joe Smith, accepted to the Astrophysical Journal (ApJ) in August 2024. 

The data and the data mining techniques used to create the data set to train the ANN can be found in Section 2.2 of the paper - this data set is provided below for ease of access. There is also a code file containing the model's weights, architecture, training configuration, and additional information:

1. astrobinary_data.csv2. ann_model.keras

To make classifications, the ANN can be loaded via the ann_model.keras file with the following Python script:

import tensorflow as tfann_model = tf.keras.models.load_model('ann_model.keras')ann_model.summary()DISCLAIMER:If you download and use this ANN model, please cite the paper above.
DOI: 10.5281/zenodo.13694431
title: Supplementary material - Non-resonant background removal in broadband CARS microscopy using deep-learning algorithms

description: This repository contains the data presented in the publication: "Non-resonant background removal in broadband CARS microscopy using deep-learning algorithms".
DOI: 10.6084/m9.figshare.22637353.v1
title: HG004 Illumina PCR Free

description: HG004 Illumina PCR Free vcf 40x coverage
DOI: 10.6084/m9.figshare.22637377.v1
title: HG007 Illumina PCR Free

description: HG007 Illumina PCR Free vcf 40x coverage
DOI: 10.5066/p9qlhwjx
title: Optical measurements for surface water samples collected within the Neshaminy Creek basin during November 2021

description: Here we report optical data collected as part of a collaborative study between USGS Pennsylvania Water Science Center, Pennsylvania Department of Environmental Protection and Water Mission Area Proxies Project. The optical measurements reported here were collected to aide in the characterization of water sources and mixtures and establish proxies (surrogates) for per- and poly-fluorinated alkyl substances within the Neshaminy Creek basin. Data are compiled into three tables: 1) full fluorescence spectra in vectorized format, 2) full absorbance spectra, and 3) summary file of commonly extracted optical indicators and field-based sensor arrays.
DOI: 10.5067/gpm/ssmi/f08/1c/07
title: GPM SSMI on F08 Common Calibrated Brightness Temperatures L1C 1.5 hours 13 km V07
DOI: 10.5281/zenodo.10554686
title: Data and code related to manuscript 'Improved definition of prior uncertainties in CO2 and CO fossil fuel fluxes and the impact on a multi-species inversion with GEOS-Chem (v12.5)'

description: Provided are several datasets and two pieces of code that can be used to analyse/visualise the data.

TNO_GHGco_v4_0_2018_uncertainties_v1_0_Edinb.nc: contains emissions uncertainties related to the TNO-GHGco-v4 European emission inventory.

inv_out_*: 4 files with output from numerical experiments with GEOS-Chem (v12.5) and with either default uncertainties (base) or the advanced ones provided in TNO_GHGco_v4_0_2018_uncertainties_v1_0_Edinb.nc (tno) and with only CO2 (co2) or CO2 and CO combined (co2_co).

Other files are input files for the numerical experiments that provide additional data needed for plotting.

The python codes are used to analyse the output from the numerical experiments. The scalar version provides scatter plots for the scaling factors resulting from the inversions and the emis version provides maps of the difference between absolute prior and posterior deviations from the true emissions.
DOI: 10.5281/zenodo.11079949
title: Pflanzenkohle als C-Senke: Technische, ökonomische und ökologische Aspekte
title: Biochar as carbon sink: technical, economic and ecological aspects

description: Existierende ökonomisch-ökologische Bewertungen zur Herstellung und Anwendung von Pflanzenkohle sind häufig aufgrund ihres Fallstudiencharakters nicht generalisierbar. Um eine aktuelle und generalisierbare Datengrundlage für weitere Analysen zu schaffen, werden in dieser Datenzusammenstellung drei generische Prozesskonfigurationen für die Herstellung und Anwendung von Pflanzenkohle definiert. Die Prozesskonfigurationen basieren auf empirisch erhobenen Daten, die um weitere Angaben aus der Literatur ergänzt werden. 
description: Existing ecological and economic assessments on the production and use of biochar are often not generalizable due to their case study character. To create an up-to-date and generalizable data basis for further analyses, three generic process configurations for the production and use of biochar are defined in this data documentation. The process configurations are based on empirically collected data, which are supplemented by further information from the literature.
DOI: 10.5281/zenodo.11503929
title: Experimental data about epidote
DOI: 10.6084/m9.figshare.22637422.v1
title: ClinVar

description: ClinVar version 20220812
DOI: 10.6084/m9.figshare.27020443
title: Supplementary Material for: Light exposure on alertness after wake-up in healthy men: Comparing dim, bright, red and blue light

description: Introduction. Light is a key factor in moderating human alertness, both subjective and objective. However, the methodology applies in research on the effects of exposure to light of different wavelengths and intensities on objective and subjective alertness varies greatly and evidence on objective alertness in particular is still inconclusive. Thus, the present, highly-standardized within-subject laboratory study on N = 44 healthy males study explored how LED light of different intensities (dim versus bright light) and wavelengths (red versus blue) affected objective (reaction time/RT) as well as subjective (sleepiness) alertness in the morning after wake-up. 
Methods. Participants spent two separate nights in the laboratory and were exposed to either one of the two light intensities or colors for 60 minutes after wake-up. Additionally, they indicated their sleepiness on the Karolinska Sleepiness Scale and participated in an auditory RT task before and after light intervention. It was hypothesized that both bright and blue light would lead to greater subjective and objective alertness when compared to dim and red light, respectively. 
Results. Results indicated that average RTs were longer for participants in the bright light condition (p = .004) and that RTs decreased post-light exposure irrespective of light being dim or bright (p = .026). However, dim vs. bright light and RT did not interact (p = .758). Chronotype was a significant covariate in the interaction of dim vs. bright light and subjective sleepiness (p = .008). There was no difference in RTs when comparing exposure to red or blue light (p = .488). Findings on subjective sleepiness and light of different wavelengths revealed that sleepiness was reduced after light exposure (p = .007), although the wavelength of light did not appear to play a role in this effect (p = .817). 
Conclusion. Hence, neither of the hypotheses could be confirmed. However, they indicated that evening types might benefit from exposure to bright light regarding sleepiness, but not morning types.
DOI: 10.15468/dl.yn3ah5
title: Occurrence Download

description: A dataset containing 3468209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "GadmGid is one of (USA, CAN)",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 3468209 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0126832-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/xztwjmktrg.3
title: COVID-19 Chest X-ray Images 

description: 368 Chest X-ray Images taken from confirmed COVID-19 subjects, which were admitted to hospital due to COVID-19 respiratory complications.
DOI: 10.23728/b2share.8a702b93df6a4dcea7774c019ed61377
title: Survey on perceptions of climate, security and fishing in relation to the mobility of immigrants in Spain

description: Table with raw data from the survey
DOI: 10.4231/d3rb6w337
title: TEST 15M - RCK02 : Part  2 - 9m radius centrifuge experiment on sandy levee behavior under ground motions

description: TEST 15M is the second part of the second investigation (RCK02) we run in the large scale 9m radius centrifuge at UC Davis. At the end of test 14M we removed the clayey levee and we replaced it with a sandy levee. This process involved several days and led to a different configuration of the model. The records of this stage could not be cataloged under the same folder of the former stage. The objective of TEST 15M was to investigate the seismic performance of the typical sandy levee on top of a peat layer we encounter in the Sacramento-San Joaquin Delta. The model was spun to 57 g modeling a prototype scale 5 m levee atop 6 m of peat. A moderate motion (representative of the Delta seismic risk) was applied to the model when primary consolidation at 57 g were reached. The report discusses in detail the setup and the outcomes.
DOI: 10.4231/d3w37kw7z
title: TEST 14M - RCK02 : Part 1 - 9m radius centrifuge experiment on clayey levee behavior under ground motions

description: Test 14M and the following test 15M are Part 1 and Part 2 of a unique experiment which was cataloged as RCK02 in the records of the centrifuge facility @ UC Davis. These second investigation RCK02 has very similar setup to the previous investigation RCK01, and the main differences are related to improve the design of the test. Again, test 14M employs the large scale (9m radius) centrifuge, and models a prototype scale 5 m height levee on top of 6 m of peat. The levee is made of modeling clay, and the container was spun to 57 g, then several ground motions were applied in order to investigate the seismic performance of the structure. Due to the possibility of failure in the peat from the increased stressed at higher g levels, the model was spun slowly to increased the g field. In the following Part 2 (Test 15M) the clayey levee will be substituted with a sandy levee.
DOI: 10.5066/f73b5x8n
title: A database of instrumentally recorded ground motion intensity measurements from induced earthquakes in Oklahoma and Kansas

description: The database contains uniformly processed ground motion intensity measurements (peak horizontal ground motions and 5-percent-damped pseudospectral accelerations for oscillator periods 0.110 s). The earthquake event set includes more than 3,800 M≥3 earthquakes in Oklahoma and Kansas from January 2009 to December 2016. Ground motion time series were collected out to 500 km. We also relocated the majority of the earthquake hypocenters using a multiple-event relocation algorithm to produce a set of near-uniformly processed hypocentral locations. Details about data processing are reported in the accompanying article.
DOI: 10.5066/p9jln3hx
title: Smallmouth buffalo population demographics in the Upper Mississippi River system data