cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9928541.v2
title: Onimaru_et_al_Supplementary_Data

description: This folder contains Supplementary data forTitle: “Developmental hourglass and heterochronic shifts in fin and limb development”Authors: Koh Onimaru*1,2, Kaori Tatsumi1, Chiharu Tanegashima1, Mitsutaka Kadota1, Osamu Nishimura1, Shigehiro Kuraku*1Affiliations:1. Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), 2-2-3 Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo, 650-0047, Japan2. Laboratory for Bioinformatics Research, RIKEN BDR, 1-2 Hirosawa, Wako city, Saitama, 351-0198, Japan*Corresponding authors. Email: koh.onimaru@riken.jp, shigehiro.kuraku@riken.jpdoi: https://doi.org/10.1101/2020.01.10.901173<br><br>===file descriptions===<br>Onimaru_et_al_Supplementary_data_amino_acid_seqs_based_on_gene_model.fa.gz: Amino acid sequences of the genes in the bamboo shark genome<br>Onimaru_et_al_Supplementary_data_ATAC_seq_GO_analysis.zip: the source data of Supplementary file 12 (GO analysis of clusterd ATAC-seq peaks). c1 to c8 correspond to Figure 5A. <br>Onimaru_et_al_Supplementary_data_ATAC_seq_motifs.zip: the source data of Figure 5A and Figure 5-figure supplement 2 and 3.<br>Onimaru_et_al_supplementary_data_ATAC_seq_peaks_by_clusters.sip: peak regions sorted by the clusters in Figure 5A.<br>Onimaru_et_al_Supplementary_data_bamboo_shark_genome.fa.gz: a bambooshark genome assembly used in this paper. This assembly is equal to https://transcriptome.riken.jp/squalomix/resources/01.GCA_003427335.1_Cpunctatum_v1.0_genomic.rn.fna.gz except that scaffold ids are named scaffold_XXXXX in this file.<br>Onimaru_et_al_Supplementary_data_bamboo_shark_transcriptome_assembly.fa.gz: a bamboo shark transcriptomic assembly used in this paper.Onimaru_et_al_Supplementary_data_bamboo_shark_transcriptome_assembly_amino_acid_seq.fa.gz: amino acid sequences of the above transcriptome.<br><br>Onimaru_et_al_Supplementary_data_gene_model_with_orthology_annotation.gff3.gz: a gff3 file based on orthology annoation in this paper. This file is prepared to visualize ATAC-seq peak data and RNA-seq data on the bambooshark genome provided in this folder.<br>
DOI: 10.6084/m9.figshare.22639423.v1
title: Reptile Database data dump 2017-05

description: See Reptile Database for details, citations, publications etc. <br> Citation: Uetz, P., Freed, P. & Hošek, J. (eds.) (2017) The Reptile Database, http://www.reptile-database.org, accessed May 2017 <br> Please contact Peter Uetz for most recent releases and data dumps
DOI: 10.6084/m9.figshare.24499129.v1
title: 基于深度学习和稀疏反卷积的结构照明显微镜的超分辨率重建

description: 基于深度学习和稀疏反卷积的结构照明显微镜的超分辨率重建
DOI: 10.6084/m9.figshare.21211241.v3
title: Code and data files for figure generation

description: R code and data files to generate figures presented in Bolnick et al "<strong>A multivariate view of the speciation continuum". </strong>The datasets for birds (birdspn.csv), frogs (frogspn.csv), lepidoptera (lepspn.csv) came from Dan Funk and Patrik Nosil arising from their 2005 paper. The dataset for Drosophila (Dros.csv) was from Roman Yukilevich, with modifications added to his 2012 publication dataset as described in the Supplementary Materials to the Bolnick et al paper. The plant database (plantspn.csv) was supplied by Leonie Moyle.
DOI: 10.6084/m9.figshare.23735481.v1
title: Data for the paper "Multi-parameter identification of the day-night asymmetric inner edge of Earth’s plasmasphere"

description: (1) Data for Figure 1 includes the SVD processed results of the EMFISIS data. (2) Data for Figures 2 and S1 are the statistical results of the Van Allen Probe crossing times and the occurrence rate and amplitde of hiss waves under differenet geomagnetical conditions. (3) Data for Figures 3 and S2 are the statistical results of ion's parameters measured by DEMETER satellite.
DOI: 10.6084/m9.figshare.27102253.v2
title: Data from: Feeling Senseless Sensations: A Crossmodal EEG Study of Mismatched Tactile and Visual Experiences in Virtual Reality

description: To create highly immersive experiences in virtual reality (VR) it is important to not only include the visual sense but also to involve multimodal sensory input. To achieve optimal results, the temporal and spatial synchronization of these multimodal inputs is critical. It is therefore necessary to find methods to objectively evaluate the synchronization of VR experiences with a continuous tracking of the user. In this study a passive touch experience was incorporated in a visual-tactile VR setup using VR glasses and tactile sensations in mid-air. Inconsistencies of multimodal perception were intentionally integrated into a discrimination task. The participants’ electroencephalogram (EEG) was recorded to obtain neural correlates of visual-tactile mismatch situations. The results showed significant differences in the event-related potentials (ERP) between match and mismatch situations. A biphasic ERP configuration consisting of a positivity at 120 ms and a later negativity at 370 ms was observed following a visual-tactile mismatch. This late negativity could be related to the N400 that is associated with semantic incongruency. These results provide a promising approach towards the objective evaluation of visual-tactile synchronization in virtual experiences.
DOI: 10.6084/m9.figshare.24447283.v1
title: 2021 Nathan attendance and grade.xlsx

description: Workshop attendance rates displayed by sex and attendance mode and matched with marks.
DOI: 10.6084/m9.figshare.25044458.v3
title: Seismic data and shear wave velocity model for the Wudalianchi volcanic field

description: <b>WDLC_NCF_SHZ_2018.zip</b> is the noise cross-correlation waveforms.<b>WDLC_Dispersion_2018.zip</b> is the dispersion data of Rayleigh waves.<b>Vs_model.txt</b> is the shear wave velocity model.<b>Seismicity.xls</b> is the seismicity data collected in the Wudalianchi volcanic field from 2009 to 2022.<b>Heat_model.pvd</b> is the thermal evolution model.
DOI: 10.6084/m9.figshare.21429393.v1
title: tedsim_lineage

description: This dataset is based on TedSim simulated data :cite:<code>pan:22</code>. TedSim simulates cell division events from root cell to present-day cells, simultaneously generating two data modalities for each cell, gene expression and a lineage barcode. Here the early and late time points relate to depth <code>8</code> and <code>12</code> accordingly in the simulated tree. The :attr:<code>anndata.AnnData.X</code> entry is based on reprocessing of the counts data consisting of :meth:<code>scanpy.pp.normalize_total</code> and :meth:<code>scanpy.pp.log1p</code>. `.obsm["barcodes"]' contains the simulated barcode array per cell
DOI: 10.6084/m9.figshare.10010540.v1
title: Appendix table 2a & 2b.xlsx

description: Appendix Table 2<br>
DOI: 10.6084/m9.figshare.6168809.v1
title: Free throws results and predictions by male and female players

description: Subjects shot free throws and their vision was occluded at ball release. Subjects predicted the shot was 'in' or 'out' after each shot. Files show counts for actual shot outcomes and predictions made by the shooter and statistical values for true positive, false positive, etc.
DOI: 10.6084/m9.figshare.27109831.v1
title: Qualitative Interview Guide: Knowledge Management of central banks

description: An investigation into knowledge management by central banks with regard to the transfer of knowledge to policymakers in government and parliament to combat financial crises.
DOI: 10.6084/m9.figshare.12689615.v1
title: Additional data.xlsx

description: Linked genotype and phenotype data of fine-mapping
DOI: 10.6084/m9.figshare.1019903.v1
title: NCBI Taxonomy Newick v.1 - 5.1.2014

description: NCBI taxonomy constructed as a single newick file. This file was built using the names.dmp and nodes.dmp files availabe from the NCBI ftp site on 5.1.2014.
DOI: 10.6084/m9.figshare.20731680.v1
title: Active Control of Fuel Position in Opposed-Flow Strand Burner Experiments

description: This paper describes a new active method of controlling the position of the burning surface of a solid fuel strand in an opposed-flow burner experiment. This method is designed to avoid biases to the combustion process introduced by retaining wires and to avoid experimental delays caused by wire failures. Regression rates are presented for hydroxyl-terminated polybutadiene fuel strands burning in various oxidizer streams. The active control method uses a control loop composed of a diode laser, a photodiode, and a stepper motor. For comparison, tests were also performed using the commonly used passive control method of spring-loading the fuel against a retaining wire. This active control method can only be used at high values of oxidizer mass flux; at low mass flux, soot accumulation obstructs the laser beam. In passive control tests, the retaining wire conducts heat from the flame into the fuel and increases regression rate. The presence of the wire also modifies the extinction limits of the flame. A model was developed for regression rate as a function of oxidizer mass flux, oxidizer composition, and retaining wire diameter. This model can be used to correct future regression rate data for the bias introduced by retaining wires.
DOI: 10.6084/m9.figshare.7409561.v1
title: Dataset for "Genetic, plastic and environmental contributions to the impact of a range-expanding predator on aquatic ecosystems"

description: Dataset used in Therry et al. <br>
DOI: 10.6084/m9.figshare.28287755.v1
title: Acute Estrogen_Supplemental Table.docx

description: Supplemental Table for Acute Estrogen Manuscript.
DOI: 10.6084/m9.figshare.14897097.v1
title: HLD_summary_statistics_all_SNP

description: Summary statistics of GWAS for hyperlipidemia in Taiwan
DOI: 10.6084/m9.figshare.8305832.v2
title: Census data

description: Bagworm census data
DOI: 10.6084/m9.figshare.9121862.v2
title: pupil data.rar

description: pupil size to measure driving behavior when driving on two types of deceleration markings.
DOI: 10.15468/dl.9svywh
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Marsilea quadrifolia L."
 ]
}

 The dataset includes 77 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001442-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21111688.v1
title: Selective modulation of cortical population dynamics during neuroprosthetic skill learning

description: Datasets analyzed in Zippi, You, et al., 2022 to study cortical population dynamics during neuroprosthetic skill learning in populations of neurons whose activity serves as direct input to a brain-machine interface decoder (direct subpopulation) and populations whose activity was not directly input to the BMI decoder (indirect subpopulation). Data were originally recorded and published by Ganguly & Carmena, 2009. Neural recordings were made using the MAP system (Plexon, Dallas TX). Stable units, to be part of the direct ensemble, were selected based on waveform shape, amplitude, relationship to other units on the same channel, interspike interval distribution, and the presence of an absolute refractory period. Only units from primary motor cortex were used which had a clearly identified waveform with signal-to-noise ratio of at least 4:1. Activity was sorted prior to recording sessions using an online spike-sorting application (Sort Client; Plexon). Stability of waveforms was confirmed by analyzing the stability of PCA projections over days (Wavetracker; Plexon). Data consists of a MATLAB structure for each subject. Data are divided into 15 epochs consisting of 150 self-initiated trials. Each epoch contains binned spike counts for each trial (units, bins) as well as the corresponding x and y cursor position in each bin. The binned spike counts are separated by direct and indirect neurons. Indirect neurons are further separated into near (those recorded on the same electrode as a direct neuron) and far (those recorded on a separate electrode). "Rearranged neural data" represents the neural data after stability in the indirect neural recordings was assessed using the methods described in Fraser and Schwartz, 2012. In these matrices, the index in the first dimension represents the ID of the neuron across epochs. A second MATLAB structure for each subject with data for each epoch separated by target. An additional MATLAB structure containing behavioral data is included per subject. These structures contain an array of the target IDs, trial length, and whether or not the self-initiated trial was successful of length all trials.
DOI: 10.6084/m9.figshare.20141363.v1
title: Dataset of the paper "Evaluating Atoms of Confusion in the Context of Code Reviews"

description: This dataset contains the data produced in the paper "Evaluating Atoms of Confusion in the Context of Code Reviews"
DOI: 10.6084/m9.figshare.27928977.v1
title: Gene expression profiles in specific skeletal muscles and meat quality characteristics of sheep and goats

description: Amino acids, fatty acids and flavor compounds from 7 skeletal muscles of sheep and goats.And quality control information for 120 transcriptome data stored in the NCBI database.
DOI: 10.6084/m9.figshare.16586456.v2
title: MOFs-Based Nanoagent Enables Dual Mitochondrial Damage in Synergistic Antitumor Therapy via Oxidative Stress and Calcium Overload

description: Source data generated in this study for supplementart information have been provided as xls format.
DOI: 10.15468/dl.9h8vk2
title: Occurrence Download

description: A dataset containing 145893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Procyon lotor (Linnaeus, 1758), Procyon cancrivorus G, Nasua nasua (Linnaeus, 1766), Nasua narica (Linnaeus, 1766), Bassariscus astutus (Lichtenstein, 1830), Bassariscus sumichrasti (Saussure, 1860), Potos flavus (Schreber, 1774), Bassaricyon gabbii J.A.Allen, 1876, Bassaricyon alleni Thomas, 1880)",
 "Year 2015-2025"
 ]
}

 The dataset includes 145893 records from 470 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001430-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.23257643.v1
title: Collaea networks_PE and AE effectivness

description: Multilayer flower-visitor network of Collaea cipoensis (Fabaceae) and the effectiveness of floral visitors as pollinators (PE) and antagonists (AE).
DOI: 10.6084/m9.figshare.28452233.v1
title: lung_paired_checkpoint

description: The checkpoint of the paired lung model
DOI: 10.4121/uuid:3cfa2260-f5c5-44be-afe1-b70d35288d6d
title: BPI Challenge 2014: Incident details

description: PI Challenge 2014. This particular file contains the records relating to incidents Parent item: BPI Challenge 2014 BPI Challenge 2014: Similar to other ICT companies, Rabobank Group ICT has to implement an increasing number of software releases, while the time to market is decreasing. Rabobank Group ICT has implemented the ITIL-processes and therefore uses the Change-proces for implementing these so called planned changes. Rabobank Group ICT is looking for fact-based insight into sub questions, concerning the impact of changes in the past, to predict the workload at the Service Desk and/or IT Operations after future changes. The challenge is to design a (draft) predictive model, which can be used to implement in a BI environment. The purpose of this predictive model will be to support Business Change Management in implementing software releases with less impact on the Service Desk and/or IT Operations. We have prepared several case-files with anonymous information from Rabobank Netherlands Group ICT for this challenge. The files contain record details from an ITIL Service Management tool called HP Service Manager. We provide you with extracts in CSV with the Interaction-, Incident- or Change-number as case ID. Next to these case-files, we provide you with an Activity-log, related to the Incident-cases. There is also a document detailing the data in the CSV file and providing background to the Service Management tool.
DOI: 10.6084/m9.figshare.3550395.v1
title: Appendix B. Details of predator and/or ungulate exclusion plot construction.

description: Details of predator and/or ungulate exclusion plot construction.
DOI: 10.6084/m9.figshare.797481.v3
title: Transclusions of data into articles

description: A list of published and peer-reviewed articles in which chemical data has been included in a re-usable and structured manner by the use of digital data repositories and interactive presentation using Jmol, over the period 2006-2013.
DOI: 10.6084/m9.figshare.1205046.v1
title: The 20 Feb 2014 M4.1 Bristol Channel, UK earthquake: a preliminary moment tensor solution from full-waveform inversion

description: Moment tensor solution for the 20 Feb 2014 Mw3.7 Bristol Channel, UK earthquake from the School of Environmental Sciences, University of Liverpool
DOI: 10.6084/m9.figshare.9871370.v1
title: How does the image of the scientist appear in short animation films?

description: Abstract This is a study on the way science and scientists are represented in short films on science and technology featured in Anima Mundi Festival (1993-2013), considering symbolic elements that contribute to the image of science. Amongst 405 films on science and technology, 102 were selected for analysis. Brazilian productions predominated (91), as did films featuring genetics, biotechnology, and astronomy. The narratives mostly address technology development, ethical considerations, and explanations of scientific processes. Scientists appear in 80% of the films – mostly white men, wearing a white coat or uniform, in secret laboratories. Scientists’ presence in public spaces – stages, the media, industry – indicates a call for their greater visibility in society.
DOI: 10.6084/m9.figshare.22772141.v1
title: Data and analysis for: Freshwater turtle climbing abilities: implications for the design and use of shoreline erosion control structures

description: Data and analysis associated with the research study titled: Freshwater turtle climbing abilities: implications for the design and use of shoreline erosion control structures
DOI: 10.6084/m9.figshare.24415657.v1
title: Amanda_Freitas_Data

description: Capacity of Brazilian <i>Aedes aegypti</i> populations to transmit a locally circulating lineage of Chikungunya virus
DOI: 10.6084/m9.figshare.26733742.v1
title: Genomic prediction of cereal crop architecture traits using models informed by gene regulatory circuitries from maize

description: We used an approach typically used for breeding to infer the contributions of biological gene networks to plant architectural traits. We found that markers near genes belonging to smaller, specialized gene networks from maize could predict breeding values of leaf angle better than expected by chance for both maize and sorghum.
DOI: 10.6084/m9.figshare.11328176.v1
title: human

description: Human
DOI: 10.6084/m9.figshare.3512210.v1
title: Appendix D. A further discussion on the concept of likelihood.

description: A further discussion on the concept of likelihood.
DOI: 10.6084/m9.figshare.20369118.v5
title: Dataset_Tran Quang Tu et al_2022

description: This is avalable data that support the findings of the study: <strong>"Quality of life in HCC patients before and after transarterial chemoembolization, laparoscopic hepatectomy, or open hepatectomy"</strong>
DOI: 10.15468/dl.qb49zt
title: Occurrence Download

description: A dataset containing 973 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Litoria brevipalmata Tyler, Martin & Watson, 1972"
 ]
}

 The dataset includes 973 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001443-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26947351.v1
title: Scrip and data for Richard et al. Methods in Ecology and Evolution 2024

description: In this paper we describe and test a new experimental facility (the Aquatic Metatron) that allows working on the impacts of warming and connectivity on aquatic ecosystems. We provide the script and data needed to reproduce figures and models presented in the paper.
DOI: 10.15468/dl.c9tq4w
title: Occurrence Download

description: A dataset containing 101569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lamiastrum galeobdolon (L.) Ehrend. & Polatschek)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 101569 records from 205 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001430-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-42646
title: Personnel cards, [1991]

description: Personnel cards - form 1.02 - officer's name, date promoted, compaint, date of incident included (1961-1990), [1991]. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.25549/independent-ouc1901885
title: Penalty information, 1991

description: Collection of complaint reports against police officers - information re reports includes nature of incident, date of incident, penalty officer faced for incident, etc. (1971-1991), 1991. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.25549/independent-ouc1901894
title: Penalty information, 1991

description: Collection of complaint reports against police officers - information re reports includes nature of incident, date of incident, penalty officer faced for incident, etc. (1971-1991), 1991. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.gvq5mc
title: Occurrence Download

description: A dataset containing 1089 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caulerpa mexicana Sond. ex Kütz."
 ]
}

 The dataset includes 1089 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001639-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.