cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3646655_d10
title: Additional file 5: Table S3. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: Primer Sequences for Sanger Sequencing of Likely Pathogenic Variants (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3646655_d12
title: Additional file 4: Table S2. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: UTR Sequences Used for SHAPE Analysis on SNPfold-flagged Variants (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3646655_d13
title: Additional file 9: Table S6. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: Variants Predicted by IT to Affect TFBSs (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3646655_d14
title: Additional file 13: Table S10. of A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

description: Prioritized Variants by Gene (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3646658_d1
title: Additional file 1: Table S1. of ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients

description: Cohorts, ethnicity, and tumor stage of samples used for WES, SNP array, and qPCR. Table S2. Regions with significant copy-number alterations, as detected by ENVE, in the 30 AA CRC WES cases. Table S3. Regions with significant copy-number alterations, as detected by ENVE, in the 30 predominantly late-stage Caucasian TCGA CRC WES cases. Table S4. Recurrent somatic copy-number altered regions in the 30 AA CRC WES cases estimated by GISTIC. Table S5. Recurrent focal copy-number amplifications and deletions in the 30 AA CRC WES cases estimated by GISTIC. Table S6. Chromosomal arm-level sCNA frequencies in AA and TCGA CRCs estimated by GISTIC. (XLSX 535 kb)
DOI: 10.6084/m9.figshare.c.3646670_d1
title: Additional file 8: Table S3. of Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity

description: Esterases found in C. subterraneus genomes. (XLSX 7Â kb)
DOI: 10.6084/m9.figshare.c.3646670_d3
title: Additional file 12: Table S5. of Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity

description: 16S rRNA sequences utilized in this study. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3646670_d4
title: Additional file 11: Table S4. of Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity

description: Proteases found in C. subterraneus genomes. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3646670_d9
title: Additional file 2: Table S1. of Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity

description: Genome analyses of C. subterraneus subspecies and other bacteria. (XLSX 965Â kb)
DOI: 10.6084/m9.figshare.c.3646670_d10
title: Additional file 10: Table S2. of Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity

description: Glycohydrolases found in C. subterraneus genomes. (XLSX 7Â kb)
DOI: 10.15468/dl.4ku2qq
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia fuscopennata (Theobald, 1903)"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034037-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3647519_d1
title: Additional file 1: of Comparison of the lifetime host-to-tick transmission between two strains of the Lyme disease pathogen Borrelia afzelii

description: Data analysed in the present study. (XLSX 154Â kb)
DOI: 10.6084/m9.figshare.c.3647528_d1
title: Additional file 1: of Urogenital schistosomiasis transmission on Unguja Island, Zanzibar: characterisation of persistent hot-spots

description: Results of univariable and multivariable analyses. (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3647510_d2
title: Additional file 2 of A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence

description: Table S1. Significantly mutually exclusive alterations found in the pan-cancer data at a maximum FDR of 1%. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3647516_d2
title: Additional file 2: of IMP: a pipeline forÂ reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

description: Supplementary tables. Tables S1â  S12. Detailed table legends available within file. (XLSX 4350 kb)
DOI: 10.6084/m9.figshare.c.3647507_d3
title: Additional file 2: Table S2. of Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency

description: Gene expression (upregulation) among AP13 (LL), K5 (LL), and VS16 (UL) switchgrass genotypes (LL = lowland ecotype, UP = upland ecotype, 4X = tetraploid). (XLSX 2247 kb)
DOI: 10.6084/m9.figshare.c.3647507_d5
title: Additional file 1: Table S1. of Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency

description: Analysis of variance for the number of RNA-Seq clean reads for AP13, K5 and VS16 switchgrass genotypes across three replicates (XLSX 8707Â kb)
DOI: 10.6084/m9.figshare.c.3648626_d1
title: Additional file 3 of Concordant morphological and molecular clines in a contact zone of the Common and Spined toad (Bufo bufo and B. spinosus) in the northwest of France

description: Appendix III. Microsatellite data in GenePop format [20]. Populations are in the order 1–17, as in Table 1. (TXT 27 kb)
DOI: 10.6084/m9.figshare.c.3648626_d2
title: Additional file 1 of Concordant morphological and molecular clines in a contact zone of the Common and Spined toad (Bufo bufo and B. spinosus) in the northwest of France

description: Appendix I. Genetic polymorphisms in a transect across 17 Bufo spinosus and B. bufo populations in northwestern France, estimated for 12 microsatellite loci: Na–number of alleles, Ho–observed heterozygosity, He–expected heterozygosity and the size range of alleles in base pairs. Data for populations 1–3, 16 and 17 are from [18]. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3648626_d3
title: Additional file 4 of Concordant morphological and molecular clines in a contact zone of the Common and Spined toad (Bufo bufo and B. spinosus) in the northwest of France

description: Appendix IV. SNP data in GenePop format [20]. Populations are in the order 1–17, as in Table 1. (TXT 9 kb)
DOI: 10.6084/m9.figshare.c.3648929_d4
title: MOESM1 of Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR

description: Additional file 1. This spreadsheet file contains statistical information on the flow cytometry data presented in this study.
DOI: 10.6084/m9.figshare.4486241.v1
title: Supporting Fig 5 and 6 second file

description: data calibration and validation<br>
DOI: 10.15468/dl.pbxndt
title: Occurrence Download

description: A dataset containing 287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia linealis (Skuse, 1889)"
 ]
}

 The dataset includes 287 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034038-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3649817_d1
title: MOESM8 of Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters

description: Additional file 8: Table S2. The G-protein coupled sequences (GPCRs) identified in this study.
DOI: 10.6084/m9.figshare.c.3649814_d1
title: Additional file 7: Table S6. of Resilient microorganisms in dust samples of the International Space Station—survival of the adaptation specialists

description: Comparison of the ISS microbial community of archived dust samples (this study; “Dust filter and “Dust collector” samples) and freshly retrieved samples (Checinska et al. 2015; “HEPA-debris” and “vacuum-cleaner-bag-debris” samples). (XLSX 60 kb)
DOI: 10.6084/m9.figshare.c.3649829_d1
title: Additional file 1 of Skeleton-based cerebrovascular quantitative analysis

description: Normal047-MRA.mha. This file is the original file of NO.47 data stored by.mha format which is compressed by DICOM series data. It is the initial data and the foundation of the follow-up data (e.g. the segmentation data, the skeleton data). (MHA 24064 kb)
DOI: 10.6084/m9.figshare.c.3649817_d2
title: MOESM3 of Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters

description: Additional file 3: Database 1. The assembled transcriptome for Neocallimastix californiae.
DOI: 10.6084/m9.figshare.c.3649814_d2
title: Additional file 5: Table S4. of Resilient microorganisms in dust samples of the International Space Station—survival of the adaptation specialists

description: DADA2 output (archaeal primer set; negative controls removed). (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3649817_d7
title: MOESM6 of Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters

description: Additional file 6: Table S3. Annotation of the Piromyces finnis transcriptome.
DOI: 10.6084/m9.figshare.c.3650735_d2
title: Additional file 9: of Smoking influences the need for surgery in patients with the inflammatory bowel diseases: a systematic review and meta-analysis incorporating disease duration

description: Raw study Data. Excel file containing hazard ratios from individual studies included in the meta-analysis. (XLSX 45 kb)
DOI: 10.15468/dl.2r8xz3
title: Occurrence Download

description: A dataset containing 35862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia perturbans (Walker, 1856)"
 ]
}

 The dataset includes 35862 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034039-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3651731_d3
title: Additional file 5: of Genome-wide analysis of mRNAs associated with mouse peroxisomes

description: The integrated list of mRNAs enriched in peroxisomes and proteins detected in peroxisomes by mass spectrometry. (XLS 143 kb)
DOI: 10.6084/m9.figshare.c.3651728_d4
title: Additional file 4: of Genes of susceptibility to early neurodegenerative changes in the rat retina and brain: analysis by means of congenic strains

description: Contains RNA-Seq results by DESeq package (XLSX 6600Â kb)
DOI: 10.6084/m9.figshare.c.3651740_d4
title: Additional file 5: of The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension

description: Differentially expressed genes related to Gene Ontlogy (GO) terms for biological processes in the renal medulla of 3-month old ISIAH and WAG male rats. (XLS 160 kb)
DOI: 10.6084/m9.figshare.c.3651731_d4
title: Additional file 3: of Genome-wide analysis of mRNAs associated with mouse peroxisomes

description: The list of differentially expressed RNAs in PX and IP fractions as compared to total cellular RNA fraction (T) with a fold change cut-off more that 2-times. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3651731_d5
title: Additional file 4: of Genome-wide analysis of mRNAs associated with mouse peroxisomes

description: The list of enriched cellular component gene ontologies in pairwise comparisons between all analyzed subcellular fractions. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3651755_d2
title: Additional file 2: Table S2. of A hydrophobic spine stabilizes a surface-exposed Îą-helix according to analysis of the solvent-accessible surface area

description: Average secondary structure contents from DSSP analysis for 1mof, 1mof-I54D, 2wrp, and 2wrp-H16I at different temperatures. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3651740_d6
title: Additional file 7: of The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension

description: The summary statistics for the sequenced libraries from renal medulla of ISIAH and WAG rats. (XLS 17 kb)
DOI: 10.6084/m9.figshare.c.3651749_d5
title: Additional file 5: of SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides

description: Showing interactions between 5,022 putative BY-kinases and 586 approved drugs (from the DrugBank database). Open in Excel. (XLSX 1778 kb)
DOI: 10.6084/m9.figshare.c.3651800_d3
title: Additional file 8 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

description: Manually curated list of MapMan transition metal homeostasis genes of A. thaliana. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3651800_d4
title: Additional file 5 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

description: Gold standard dataset of genes of known copy number in A. halleri. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3651809_d4
title: Additional file 4: of Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs

description: Ranks of degradation speed and clusters. (XLSX 924Â kb)
DOI: 10.6084/m9.figshare.c.3651800_d6
title: Additional file 1 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

description: Representative reference datasets. Summary of number and position of sequence-probe hybridization mismatches relative to A. thaliana gene sequence. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3651800_d7
title: Additional file 7 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

description: Validation of array-CGH results against all genes predicted to be (A) copy number expanded (CNEs) and (B) copy number reduced (CNRs) in A. lyrata (see Table 1). (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3651809_d6
title: Additional file 1: of Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs

description: Tag counts and quantile-normalized RPKM values. (XLSX 14403Â kb)
DOI: 10.6084/m9.figshare.c.3651800_d8
title: Additional file 2 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

description: Mismatches with respect to ATH1 GeneChip probe sequences in representative reference datasets of A. halleri and A. lyrata. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3651800_d9
title: Additional file 9 of Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

description: Complete dataset expanded from Additional file 3. (XLS 16282 kb)
DOI: 10.15468/dl.c3p5xa
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendroica cerulea (A.Wilson, 1810)",
 "HasCoordinate is True",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to January",
 "Month is less than or equal to December",
 "HasGeospatialIssue is False"
 ]
}

 The dataset includes 105 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034040-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3651818_d1
title: Additional file 2: of A fast exact sequential algorithm for the partial digest problem

description: Supplementary data. Calculation of the Standard Error of Mean (SEM), Coefficient of Variation (CV), and Wilcoxon Signed-Rank test for the running time. Tables S1-S5. in Sheet 1 and 2, represent the calculation of SEM and CV for the running time of BBd, BBb, and BBb2 algorithms in case of random data and Zhang data respectively. Tables S6–S8. in Sheet 3, represent the Wilcoxon Signed-Rank test between BBd and BBb algorithms for the running time of Random and Zhang data. Tables S9–S11. in Sheet 4, represent the Wilcoxon Signed-Rank test between BBb and BBb2 algorithms for the running time of Random and Zhang data. Tables S12–S14. in Sheet 5, represent the Wilcoxon Signed-Rank test between BBd and BBb2 algorithms for the running time of Random and Zhang data. (XLS 168 kb)
DOI: 10.15468/dl.m3ke82
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.48_1",
 "TaxonKey is Boloria bellona (Fabricius, 1775)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034041-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhw6d8
title: Occurrence Download

description: A dataset containing 889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia richiardii (Ficalbi, 1889)"
 ]
}

 The dataset includes 889 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034042-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3652436_d2
title: Additional file 3 of Gene-microRNA network module analysis for ovarian cancer

description: Enrichment results of the modules in Additional file 1. We presented the GO-BP enrichment results and KEGG pathway enrichment results of modules in Additional file 1. (XLSX 120 kb)
DOI: 10.6084/m9.figshare.c.3652436_d3
title: Additional file 2 of Gene-microRNA network module analysis for ovarian cancer

description: The identified modules with Mirsynergy. We listed all the modules identified with Mirsynergy. Each module includes both genes and microRNAs. (CSV 87 kb)
DOI: 10.6084/m9.figshare.c.3652436_d4
title: Additional file 4 of Gene-microRNA network module analysis for ovarian cancer

description: Enrichment results of the modules in Additional file 2. We presented the GO-BP enrichment results and KEGG pathway enrichment results of modules in Additional file 2. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.c.3653924_d1
title: Additional file 13: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: List of seven COG-groups associated with the ability to infect dicots (XLSX 52 kb)
DOI: 10.15468/dl.fmgk2s
title: Occurrence Download

description: A dataset listing the 174 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves de la Ecoreserva Campo Rubiales (Puerto Gaitan, Meta) - Proyecto FIBRAS"
 ]
}

 The dataset's 174 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034036-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3653957_d2
title: Additional file 3: of The efficacy of treadmill training with and without projected visual context for improving walking ability and reducing fall incidence and fear of falling in older adults with fall-related hip fracture: a randomized controlled trial

description: Individual participant data regarding walking ability, fear of falling, general health and falls. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3653963_d1
title: Additional file 5: Table S1. of Evolution of mitochondrial genomes in Baikalian amphipods

description: Primers used for amplification of Baikalian amphipod mitochondrial genomes. Table S2. Accession numbers of amphipod mitochondrial genomes from GenBank database used in the study (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3653960_d2
title: Additional file 1: Table S1. of Analysis of molecular networks and targets mining of Chinese herbal medicines on anti-aging

description: The data sets of all collected targets. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3653924_d7
title: Additional file 4: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: Pairwise ANI values for the strains of phylogroup 29 (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3653924_d8
title: Additional file 3: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

description: Main morphological, cultural, and biochemical properties of the Pseudomonas syringae bacterial strains isolated from sunflower and wheat in different regions of the Russian Federation (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3653960_d3
title: Additional file 2: Table S2. of Analysis of molecular networks and targets mining of Chinese herbal medicines on anti-aging

description: The top five interaction networks involved by targets of Kidney-tonifying Herbal Medicines. (XLS 17 kb)
DOI: 10.15468/dl.7ks48x
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia venezuelensis (Theobald, 1912)"
 ]
}

 The dataset includes 614 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034043-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3653933_d7
title: Additional file 4: Table S1. of Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

description: Details on gene, site sampling, and data sources per taxon used in our phylogenomic dataset. (XLSX 86 KB)