cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.15753
title: Multiband Simultaneous Photometry of Type II SN 2023ixf with Mephisto and the Twin 50-cm Telescopes
title: Multiband Simultaneous Photometry of Type II SN 2023ixf with Mephisto and the Twin 50-cm Telescopes

description: SN 2023ixf, reported in the nearby galaxy M101 at a distance of 6.85 Mpc, was one of the closest and brightest core-collapse supernovae (CCSNe) in the last decade. We present multi-wavelength photometric observation of SN 2023ixf with the Multi-channel Photometric Survey Telescope (Mephisto) and with the twin 50-cm telescopes.
description: SN 2023ixf, reported in the nearby galaxy M101 at a distance of 6.85 Mpc, was one of the closest and brightest core-collapse supernovae (CCSNe) in the last decade. We present multi-wavelength photometric observation of SN 2023ixf with the Multi-channel Photometric Survey Telescope (Mephisto) and with the twin 50-cm telescopes.
DOI: 10.57760/sciencedb.17880
title: Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage)
title: Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage)

description: the data of“Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage)”
description: the data of“Comparative mitogenome research revealed the phylogenetics and evolution of the superfamily Tenebrionoidea (Coleoptera: Polyphage)”
DOI: 10.57760/sciencedb.space.01888
title: The data for a Tianwen-1 case study utilized to analyze acceleration of pick-up ions in the Martian magnetosheath
title: The data for a Tianwen-1 case study utilized to analyze acceleration of pick-up ions in the Martian magnetosheath

description: This dataset includes the MOMAG (1-sec time resolution) and MINPA (16-sec time resolution) data from Tianwen-1 on January 7, 2022, KP data (4-sec time resolution) from MAVEN, as well as the results of the MHD model and test particle model used for analysis.
description: This dataset includes the MOMAG (1-sec time resolution) and MINPA (16-sec time resolution) data from Tianwen-1 on January 7, 2022, KP data (4-sec time resolution) from MAVEN, as well as the results of the MHD model and test particle model used for analysis.
DOI: 10.57760/sciencedb.lcbl.00018
title: Analysis of awareness and treatment willingness of Helicobacter pylori infection in the general population
title: 普通人群幽门螺杆菌感染认知度和治疗意愿分析数据表

description: This data is a summary table obtained by analyzing the awareness and treatment willingness of Helicobacter pylori infection among the general population from September to October 2022.Table 1 shows the background information of the respondents, including the demographic basic information of 518 respondents; Attached Table 2 presents basic data statistics on the respondents' understanding of Helicobacter pylori; Table 3 presents a univariate analysis of the impact of basic characteristics of the general population on the cognitive level of Helicobacter pylori; Attachment Table 4 presents the different dimensions and reliability analysis of the Treatment Intention Scale for this study; Attachment Table 5 presents a univariate analysis of the impact of basic characteristics and cognitive level of the general population on the willingness to treat Helicobacter pylori; Attachment 1 shows the statistics of the general population's understanding of Helicobacter pylori pathways.
description: This data is a summary table obtained by analyzing the awareness and treatment willingness of Helicobacter pylori infection among the general population from September to October 2022.Table 1 shows the background information of the respondents, including the demographic basic information of 518 respondents; Attached Table 2 presents basic data statistics on the respondents' understanding of Helicobacter pylori; Table 3 presents a univariate analysis of the impact of basic characteristics of the general population on the cognitive level of Helicobacter pylori; Attachment Table 4 presents the different dimensions and reliability analysis of the Treatment Intention Scale for this study; Attachment Table 5 presents a univariate analysis of the impact of basic characteristics and cognitive level of the general population on the willingness to treat Helicobacter pylori; Attachment 1 shows the statistics of the general population's understanding of Helicobacter pylori pathways.
DOI: 10.57760/sciencedb.14230
title: CPIA Dataset_Part01: A Comprehensive Pathological Image Analysis Dataset for Self-supervised Learning Pre-training
title: CPIA Dataset_Part01: A Comprehensive Pathological Image Analysis Dataset for Self-supervised Learning Pre-training

description: Pathological image analysis is a crucial field in computer-aided diagnosis. Transfer learning using models initialized on natural images has improved the downstream pathological performance. However, the lack of sophisticated domain-specific pathological initialization hinders their potential. Self-supervised learning (SSL) enables pre-training without sample-level labels, overcoming the challenge of expensive annotations. Thus, this field calls for a comprehensive dataset, similar to the ImageNet in computer vision. This paper presents a large-scale comprehensive pathological image analysis (CPIA) dataset for SSL pre-training. The CPIA dataset contains 148,962,579 images, covering over 48 organs/tissues and approximately 100 kinds of diseases, which includes two main data types: whole slide images (WSIs) and characteristic regions of interest (ROIs). And we establish a multi-scale pathological data processing workflow, combined with the diagnosis habits of senior pathologists. The CPIA dataset facilitates a comprehensive pathological understanding and enables pattern discovery explorations. Additionally, to launch the CPIA dataset, several state-of-the-art (SOTA) baselines of SSL pre-training and downstream evaluation are specially conducted. This is the Part01 of CPIA dataset, including the CPIA-Mini and partial CPIA dataset. The related code and information are available at https://github.com/zhanglab2021/CPIA_Dataset.
description: Pathological image analysis is a crucial field in computer-aided diagnosis. Transfer learning using models initialized on natural images has improved the downstream pathological performance. However, the lack of sophisticated domain-specific pathological initialization hinders their potential. Self-supervised learning (SSL) enables pre-training without sample-level labels, overcoming the challenge of expensive annotations. Thus, this field calls for a comprehensive dataset, similar to the ImageNet in computer vision. This paper presents a large-scale comprehensive pathological image analysis (CPIA) dataset for SSL pre-training. The CPIA dataset contains 148,962,579 images, covering over 48 organs/tissues and approximately 100 kinds of diseases, which includes two main data types: whole slide images (WSIs) and characteristic regions of interest (ROIs). And we establish a multi-scale pathological data processing workflow, combined with the diagnosis habits of senior pathologists. The CPIA dataset facilitates a comprehensive pathological understanding and enables pattern discovery explorations. Additionally, to launch the CPIA dataset, several state-of-the-art (SOTA) baselines of SSL pre-training and downstream evaluation are specially conducted. This is the Part01 of CPIA dataset, including the CPIA-Mini and partial CPIA dataset. The related code and information are available at https://github.com/zhanglab2021/CPIA_Dataset.
DOI: 10.5281/zenodo.15278305
title: Molecular docking studies of ortho-substituted phenols to tyrosinase helps discern if a molecule can be an enzyme substrate

description: Dataset corresponding to manuscript:

Montenegro, M.F.; Teruel, J.A.; Garcia-Molina, P.; Tudela, J.; Rodriguez-Lopez, J.N.; Garcia-Canovas, F.; Garcia-Molina, F.Molecular docking studies of ortho-substituted phenols to tyrosinase helps discern if a molecule can be an enzyme substrateInt. J. Mol. Sci. 2024, 25, 6891, 14 pages.ISSN: 1661-6596, EISSN: 1422-0067.©2024. This manuscript version is made available under the CC-BY 4.0 license http://creativecommons.org/licenses/by/4.0/This document is the Published Manuscript version of a Published Work that appeared in final form in the International Journal of Molecular Sciences.To access the final edited and published work see https://doi.org/10.3390/ijms25136891
description: Phenolic compounds with a position ortho to the free phenolic hydroxyl group occupied can be tyrosinase substrates. However, ortho-substituted compounds are usually described as inhibitors. The mechanism of action of tyrosinase on monophenols is complex, and if they are ortho-substituted, it is more complicated. It can be shown that many of these molecules can become substrates of the enzyme in the presence of catalytic o-diphenol, MBTH, or in the presence of hydrogen peroxide. Docking studies can help discern whether a molecule can behave as a substrate or inhibitor of     the enzyme. Specifically, phenols such as thymol, carvacrol, guaiacol, eugenol, isoeugenol, and ferulic acid are substrates of tyrosinase, and docking simulations to the active center of the enzyme predict this since the distance of the peroxide oxygen from the oxy-tyrosinase form to the ortho position of the phenolic hydroxyl is adequate for the electrophilic attack reaction that gives rise to hydroxylation occurring.
DOI: 10.5281/zenodo.15278306
title: Molecular docking studies of ortho-substituted phenols to tyrosinase helps discern if a molecule can be an enzyme substrate

description: Dataset corresponding to manuscript:

Montenegro, M.F.; Teruel, J.A.; Garcia-Molina, P.; Tudela, J.; Rodriguez-Lopez, J.N.; Garcia-Canovas, F.; Garcia-Molina, F.Molecular docking studies of ortho-substituted phenols to tyrosinase helps discern if a molecule can be an enzyme substrateInt. J. Mol. Sci. 2024, 25, 6891, 14 pages.ISSN: 1661-6596, EISSN: 1422-0067.©2024. This manuscript version is made available under the CC-BY 4.0 license http://creativecommons.org/licenses/by/4.0/This document is the Published Manuscript version of a Published Work that appeared in final form in the International Journal of Molecular Sciences.To access the final edited and published work see https://doi.org/10.3390/ijms25136891
description: Phenolic compounds with a position ortho to the free phenolic hydroxyl group occupied can be tyrosinase substrates. However, ortho-substituted compounds are usually described as inhibitors. The mechanism of action of tyrosinase on monophenols is complex, and if they are ortho-substituted, it is more complicated. It can be shown that many of these molecules can become substrates of the enzyme in the presence of catalytic o-diphenol, MBTH, or in the presence of hydrogen peroxide. Docking studies can help discern whether a molecule can behave as a substrate or inhibitor of     the enzyme. Specifically, phenols such as thymol, carvacrol, guaiacol, eugenol, isoeugenol, and ferulic acid are substrates of tyrosinase, and docking simulations to the active center of the enzyme predict this since the distance of the peroxide oxygen from the oxy-tyrosinase form to the ortho position of the phenolic hydroxyl is adequate for the electrophilic attack reaction that gives rise to hydroxylation occurring.
DOI: 10.57760/sciencedb.14540
title: A Dataset of Insect Micro-CT Image Stacks and Structure Labels
title: A Dataset of Insect Micro-CT Image Stacks and Structure Labels

description: A specification for micro-CT data of insect or other small invertebrate research is formulated here. Data descriptor of two series of slice and label image stacks of two beetle species (Sinaphaenops wangorum and Trechiotes perroti) are presented here. With this specification, not only entomologists or taxonomists can efficiently exchange high-quality insect source data, encompassing both external and internal structures of the organisms, but also researchers can annotate the precise regions of interest on the insect and subsequently generate 3D models at the micrometer or even nanometer scale. Moreover, computer engineers can collaborate with biologists to create more valuable analytical tools. In accordance with this specification, we broaden the database to cover multiple facets of species and individual development, resulting in the creation of a diverse 3D insect morphology database. This resource proves exceptionally beneficial for entomologists and taxonomists engaged in research encompassing comparative morphology, systematics, evolution, rapid identification, gene phenotypic traits, and various other areas.
description: A specification for micro-CT data of insect or other small invertebrate research is formulated here. Data descriptor of two series of slice and label image stacks of two beetle species (Sinaphaenops wangorum and Trechiotes perroti) are presented here. With this specification, not only entomologists or taxonomists can efficiently exchange high-quality insect source data, encompassing both external and internal structures of the organisms, but also researchers can annotate the precise regions of interest on the insect and subsequently generate 3D models at the micrometer or even nanometer scale. Moreover, computer engineers can collaborate with biologists to create more valuable analytical tools. In accordance with this specification, we broaden the database to cover multiple facets of species and individual development, resulting in the creation of a diverse 3D insect morphology database. This resource proves exceptionally beneficial for entomologists and taxonomists engaged in research encompassing comparative morphology, systematics, evolution, rapid identification, gene phenotypic traits, and various other areas.
DOI: 10.57760/sciencedb.17906
title: FAPbI3_tetragonal&cubic
title: FAPbI3_tetragonal&cubic

description: Initial structure of FAPbI3 of cubic phase was obtained through CIF file reported in previous report. While for tetragonal phase, no such CIF file could be found. Thus, we directly substitute Cs+ for FA+ in tetragonal phase CsPbI3, and then the resulting structure was relaxed through DFT calculation for the most stable structure. According to the usually inaccurate position of light element, we only apply structure relaxation calculation on FA+ while the Pb2+ and I- remain still.Structure relaxation and band-structure calculations are performed with plane-wave pseudopotential approach implemented in DS-PAW package. The exchange-correlation effects are concerned by PBE functional. The plane-wave cutoff energy was set to be 300.0 eV. The k-point number we set to be 5 × 5 × 5 for cubic phase and 4 × 4 × 5 for tetragonal phase respectively. Due to the heavy atom contained in perovskite materials, spin orbit coupling is included in DFT calculation for describing the real physical scenario.
description: Initial structure of FAPbI3 of cubic phase was obtained through CIF file reported in previous report. While for tetragonal phase, no such CIF file could be found. Thus, we directly substitute Cs+ for FA+ in tetragonal phase CsPbI3, and then the resulting structure was relaxed through DFT calculation for the most stable structure. According to the usually inaccurate position of light element, we only apply structure relaxation calculation on FA+ while the Pb2+ and I- remain still.Structure relaxation and band-structure calculations are performed with plane-wave pseudopotential approach implemented in DS-PAW package. The exchange-correlation effects are concerned by PBE functional. The plane-wave cutoff energy was set to be 300.0 eV. The k-point number we set to be 5 × 5 × 5 for cubic phase and 4 × 4 × 5 for tetragonal phase respectively. Due to the heavy atom contained in perovskite materials, spin orbit coupling is included in DFT calculation for describing the real physical scenario.
DOI: 10.57760/sciencedb.space.01648
title: Pi2 pulsation event annotation time-series dataset
title: Pi2脉动事件标签时序数据集

description: This dataset is used for Pi2 pulsation identification. The raw data is the 1Hz sampling H-component data of magnetic fluxgate magnetometer instrument of meridian project, (data source: https://data.meridianproject.ac.cn/), select time range for the 2011-2021. The data were labeled according to the method described in "Identification Model of Pi2 Pulsation Based on One-dimensional residual Convolutional neural Network".
description: This dataset is used for Pi2 pulsation identification. The raw data is the 1Hz sampling H-component data of magnetic fluxgate magnetometer instrument of meridian project, (data source: https://data.meridianproject.ac.cn/), select time range for the 2011-2021. The data were labeled according to the method described in "Identification Model of Pi2 Pulsation Based on One-dimensional residual Convolutional neural Network".
DOI: 10.57760/sciencedb.o00009.00227
title: Empirical Formulas for Temporal Variations of Amplitudes of Diurnal Tides in Horizontal Wind in the Mesosphere and Lower Thermosphere
title: Empirical Formulas for Temporal Variations of Amplitudes of Diurnal Tides in Horizontal Wind in the Mesosphere and Lower Thermosphere

description: An IDL program is provided to calculate the amplitudes and phases of diurnal tidal components with wavenumbers ranging from -4 to 4 (DE4−DW4) in horizontal wind (zonal/meridional) from 2002 to 2021 within the altitude range of 85 km−105 km and latitude range of 55°S−55°N.
description: An IDL program is provided to calculate the amplitudes and phases of diurnal tidal components with wavenumbers ranging from -4 to 4 (DE4−DW4) in horizontal wind (zonal/meridional) from 2002 to 2021 within the altitude range of 85 km−105 km and latitude range of 55°S−55°N.
DOI: 10.57760/sciencedb.o00009.00230
title: Empirical Formulas for Temporal Variations of Amplitudes of Terdiurnal Tides in Horizontal Wind in the Mesosphere and Lower Thermosphere
title: Empirical Formulas for Temporal Variations of Amplitudes of Terdiurnal Tides in Horizontal Wind in the Mesosphere and Lower Thermosphere

description: An IDL program is provided to calculate the amplitudes and phases of terdiurnal tidal components with wavenumbers ranging from -4 to 4 (TE4−TW4) in horizontal wind (zonal/meridional) from 2002 to 2021 within the altitude range of 85 km−105 km and latitude range of 55°S−55°N.
description: An IDL program is provided to calculate the amplitudes and phases of terdiurnal tidal components with wavenumbers ranging from -4 to 4 (TE4−TW4) in horizontal wind (zonal/meridional) from 2002 to 2021 within the altitude range of 85 km−105 km and latitude range of 55°S−55°N.
DOI: 10.15468/dl.588nfx
title: Occurrence Download

description: A dataset containing 16992 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eclectus roratus (Statius Muller, 1776)"
 ]
}

 The dataset includes 16992 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001385-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.o00009.00229
title: Empirical Formulas for Temporal Variations of Amplitudes of Semidiurnal Tides in Horizontal Wind in the Mesosphere and Lower Thermosphere
title: Empirical Formulas for Temporal Variations of Amplitudes of Semidiurnal Tides in Horizontal Wind in the Mesosphere and Lower Thermosphere

description: An IDL program is provided to calculate the amplitudes and phases of semidiurnal tidal components with wavenumbers ranging from -4 to 4 (SE4−SW4) in horizontal wind (zonal/meridional) from 2002 to 2021 within the altitude range of 85 km−105 km and latitude range of 55°S−55°N.
description: An IDL program is provided to calculate the amplitudes and phases of semidiurnal tidal components with wavenumbers ranging from -4 to 4 (SE4−SW4) in horizontal wind (zonal/meridional) from 2002 to 2021 within the altitude range of 85 km−105 km and latitude range of 55°S−55°N.
DOI: 10.57760/sciencedb.17575
title: Supplementary Figures (Multi-omics analysis of ferroptosis related genes as prognostic factors in cutaneous melanoma)
title: Supplementary Figures (Multi-omics analysis of ferroptosis related genes as prognostic factors in cutaneous melanoma)

description: This is supplementary material to the article. A detailed description of the supplementary materials is available in the article (Multi-omics analysis of ferroptosis related genes as prognostic factors in cutaneous melanoma)
description: This is supplementary material to the article. A detailed description of the supplementary materials is available in the article (Multi-omics analysis of ferroptosis related genes as prognostic factors in cutaneous melanoma)
DOI: 10.57760/sciencedb.space.01196
title: Data in paper "Investigation on Chasing and Interaction of Traveling Ionospheric Disturbances based on Multi-instrument"
title: Data in paper "Investigation on Chasing and Interaction of Traveling Ionospheric Disturbances based on Multi-instrument"

description: A dataset of the TIEGCM simulationColumn 1：dvec_out, date, year/month/day/hour /min/sec [144x6]Column 2：lat_out, latitude, ° [1x11]Column 3：long_out, longitude, ° [1x9]Column 4：NE_out, electron density, cm-3 [11x9x57x144]Column 5：UN_out, zonal wind, m/s [11x9x57x144]Column 6：VN_out, meridional wind, m/s [11x9x57x144]A dataset of the GPS receivers at Beijing and BaotouGPS_Beijing.81_nc_LGPS_Baotou.81_nc_LA dataset of the Digisonde at ShisanlingDigisonde_Shisanling.SAO
description: A dataset of the TIEGCM simulationColumn 1：dvec_out, date, year/month/day/hour /min/sec [144x6]Column 2：lat_out, latitude, ° [1x11]Column 3：long_out, longitude, ° [1x9]Column 4：NE_out, electron density, cm-3 [11x9x57x144]Column 5：UN_out, zonal wind, m/s [11x9x57x144]Column 6：VN_out, meridional wind, m/s [11x9x57x144]A dataset of the GPS receivers at Beijing and BaotouGPS_Beijing.81_nc_LGPS_Baotou.81_nc_LA dataset of the Digisonde at ShisanlingDigisonde_Shisanling.SAO
DOI: 10.57760/sciencedb.18186
title: Salidroside targeted cytosolic phospholipase A2 and regulated arachidonic acid metabolomics to attenuate atherosclerosis progression
title: Salidroside targeted cytosolic phospholipase A2 and regulated arachidonic acid metabolomics to attenuate atherosclerosis progression

description: 脂质代谢紊乱与动脉粥样硬化 （AS） 的发展有关，花生四烯酸 （AA） 和其他下游代谢物也参与其中。胞质磷脂酶 A2 （cPLA2） 是 AA 代谢中的关键限制性内切酶。据报道，Salidroside （SAL） 通过抑制炎症和减缓胆固醇积累来缓解 AS;然而，其对脂质代谢的药理作用尚不清楚。我们在体内和体外AS模型中研究了SAL对AA代谢的影响及其与cPLA2的相互作用。在两种模型中，SAL抑制脂质积累和动脉粥样硬化斑块形成，减少主动脉弓中M1巨噬细胞富集，并降低cPLA2表达。有趣的是，小分子的预测和分子动力学（MD）分析表明，SAL可能以高亲和力与cPLA2蛋白结合，增强其稳定性和柔韧性，并抑制其活性。PBS处理的AS小鼠的AA代谢组紊乱;其中27种代谢物与SAL处理的小鼠有显著差异，包括15-Lox-2产生的15-HETE代谢物。此外，敲低巨噬细胞中15-Lox-2增加了脂质积累和cPLA2表达，而SAL抑制了这些积累。综上所述，SAL通过调节AS中AA的无序代谢，直接与cPLA2结合，调节AA下游酶的功能来影响AS。
description: 脂质代谢紊乱与动脉粥样硬化 （AS） 的发展有关，花生四烯酸 （AA） 和其他下游代谢物也参与其中。胞质磷脂酶 A2 （cPLA2） 是 AA 代谢中的关键限制性内切酶。据报道，Salidroside （SAL） 通过抑制炎症和减缓胆固醇积累来缓解 AS;然而，其对脂质代谢的药理作用尚不清楚。我们在体内和体外AS模型中研究了SAL对AA代谢的影响及其与cPLA2的相互作用。在两种模型中，SAL抑制脂质积累和动脉粥样硬化斑块形成，减少主动脉弓中M1巨噬细胞富集，并降低cPLA2表达。有趣的是，小分子的预测和分子动力学（MD）分析表明，SAL可能以高亲和力与cPLA2蛋白结合，增强其稳定性和柔韧性，并抑制其活性。PBS处理的AS小鼠的AA代谢组紊乱;其中27种代谢物与SAL处理的小鼠有显著差异，包括15-Lox-2产生的15-HETE代谢物。此外，敲低巨噬细胞中15-Lox-2增加了脂质积累和cPLA2表达，而SAL抑制了这些积累。综上所述，SAL通过调节AS中AA的无序代谢，直接与cPLA2结合，调节AA下游酶的功能来影响AS。
DOI: 10.57760/sciencedb.08077
title: Biosynthetic deficiency of docosahexaenoic acid causes nonalcoholic fatty liver disease
title: Biosynthetic deficiency of docosahexaenoic acid causes nonalcoholic fatty liver disease

description: To investigate the role of the zebrafish elovl2 gene in the regulation of lipid homeostasis, we constructed mutant zebrafish with a deletion of the elovl2 gene. We then performed gene expression profiling using data obtained by RNA-seq of 2 types of zebrafish livers.
description: To investigate the role of the zebrafish elovl2 gene in the regulation of lipid homeostasis, we constructed mutant zebrafish with a deletion of the elovl2 gene. We then performed gene expression profiling using data obtained by RNA-seq of 2 types of zebrafish livers.