cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5513449.v6
title: Politicians by Country from the English-language Wikipedia

description: This project contains data on most English-language Wikipedia articles within the category "Category:Politicians by nationality" and subcategories, along with the code used to generate that data. Both are released under the CC-BY-SA 4.0 license.<br><b>Data</b>The data was extracted via the Wikimedia API using the associated code. It is formatted as a CSV and saved as <i>page_data.csv</i> in the "data" directory. Columns are:<br>1. "country", containing the sanitised country name, extracted from the category name;2. "page", containing the unsanitised page title.3. "last_edit", containing the edit ID of the last edit to the page.<br>Country codes are inconsistent. Where possible, they have been modified to match the country names found in http://www.prb.org/DataFinder/Topic/Rankings.aspx?ind=14 - but the PRB dataset contains nations not found in Wikipedia, and vice versa.<br>The actual recursion only went 2 levels deep into the category tree: someone listed as an Antiguan politician, say, is included - someone exclusively listed as an Antiguan politician who was assassinated is not.<br><b>Code</b>The code is written in the programming language R, and heavily commented; it can be found in the "code" directory, and is split into 3 files:<br>1. <i>utils.R, </i>which contains utilities for operating the code in the other files;2. <i>retrieve.R</i>, which contains functions for retrieving the category and page data from Wikipedia;3. <i>main.R</i>, which executes the data retrieval code and performs sanitisation before writing it to file.
DOI: 10.17632/8j9vzvtj8x
title: Student Teaching Data

description: This data set contains six semesters of data from the administration of an instrument designed to measure student teaching ability. Data are divided by time administered, whether at the mid-point or final. Data are also divided by the respondent: CT is the cooperating teacher, US is the university supervisor and the ST is the student teacher. Each item corresponds directly to a item in the accompanying instrument attached as a pdf. Performance is rated on a four point scale with 1 indicating “Below Expectations,” 2 indicating "Developing," 3 indicating "“Meets Expectations,” and 4 indicating “Exceeds Expectations.”
DOI: 10.6084/m9.figshare.24718389.v1
title: Untitled Item

description: Random Forest classifier data
DOI: 10.6084/m9.figshare.25930243.v2
title: Shapefiles and STATA

description: The research analyses the morphological patterns and drivers of urban growth and its impact on wetlands at the Densu Delta Ramsar site in Accra, Ghana.
DOI: 10.6084/m9.figshare.7127723.v2
title: Software makes science better, but is it research? DotAstonomy X Presentation

description: Invited Presentation at .Astronomy X conference
DOI: 10.6084/m9.figshare.91308.v1
title: Prediction and Interpretation of Protein pKa’s using QM/MMf

description: NSF proposal (renewal)
DOI: 10.6084/m9.figshare.12127794.v1
title: DNA demethylation is a driver for chick retina regeneration

description: Cellular reprogramming resets the epigenetic landscape to drive shifts in transcriptional programmes and cell identity. The embryonic chick can regenerate a complete neural retina, after retinectomy, via retinal pigment epithelium (RPE) reprogramming in the presence of FGF2. In this study, we systematically analysed the reprogramming competent chick RPE prior to injury, and during different stages of reprogramming. In addition to changes in the expression of genes associated with epigenetic modifications during RPE reprogramming, we observed dynamic changes in histone marks associated with bivalent chromatin (H3K27me3/H3K4me3) and intermediates of the process of DNA demethylation including 5hmC and 5caC. Comprehensive analysis of the methylome by whole-genome bisulphite sequencing (WGBS) confirmed extensive rearrangements of DNA methylation patterns including differentially methylated regions (DMRs) found at promoters of genes associated with chromatin organization and fibroblast growth factor production. We also identified Tet methylcytosine dioxygenase 3 (TET3) as an important factor for DNA demethylation and retina regeneration, capable of reprogramming RPE in the absence of exogenous FGF2. In conclusion, we demonstrate that injury early in RPE reprogramming triggers genome-wide dynamic changes in chromatin, including bivalent chromatin and DNA methylation. In the presence of FGF2, these dynamic modifications are further sustained in the commitment to form a new retina. Our findings reveal active DNA demethylation as an important process that may be applied to remove the epigenetic barriers in order to regenerate retina in mammals. bp: Base pair; DMR: Differentially methylated region; DMC: Differentially methylated cytosines; GFP: Green fluorescent protein; PCR: Polymerase chain reaction. TET: Ten-eleven translocation; RPE: retinal pigment epithelium.
DOI: 10.6084/m9.figshare.13626377.v1
title: Baseline Dataset and Synthetic Images

description: See the other two datasets in this project for more specific information.<br><b>Baseline dataset</b>Comprised of images (and the corresponding labels in labels) as well as the data in images_new and labels_new. The data in images was collected from the power plant satellite imagery dataset, and the data in images_new is naip imagery that was collected through EarthOnDemand and then hand labeled.<br><br><b>Modified Dataset</b>Contains all of the labels and images in the dataset, including the synthetic. Same as the baseline dataset, but supplementing training set with the synthetic images.<br>
DOI: 10.6084/m9.figshare.22691254.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.27383016.v1
title: LSC50: Colombian Sign Language Video and Inertial Measurement Dataset

description: We provide recordings of video and inertial measurement units, along with detected body landmarks and computed information on the inverse kinematics of the upper body such as flexion, extension, and rotation of arms and wrists. This dataset is the first of its kind for LSC and it is key for the development of technologies needed to better understand the language and reduce communication barriers between people with and without hearing loss.
DOI: 10.6084/m9.figshare.5126764.v1
title: Supplementary Material for: Detailed Assessment of Renal Function in a Proband with Harboyan Syndrome Caused by a Novel Homozygous <b><i>SLC4A11 </i></b>Nonsense Mutation

description: <b><i>Background/Aims:</i></b> To identify the underlying molecular genetic cause of disease in a patient with Harboyan syndrome and to perform a detailed assessment of her renal function. We also assessed the influence of the <i>SLC4A11</i> mutation identified on the corneal endothelium in the heterozygous state. <b><i>Methods:</i></b> A 55-year-old female was examined ophthalmologically, audiologically and nephrologically including 24-hour urine collection. The coding region of <i>SLC4A11</i> was directly sequenced. Specular microscopy was performed in the proband's 21-year-old daughter. <b><i>Results:</i></b> The proband had bilateral iridectomy at the age of 3 months because of an initial diagnosis of congenital glaucoma and since the age of 12 years she underwent several keratoplasties in each eye. Nephrological examination did not reveal any abnormalities. Moderate bilateral sensorineural hearing loss was confirmed by audiometry. A novel homozygous mutation predicted to lead to a premature stop codon at the protein level, c.2188C&gt;T; p.(Arg730*), was identified in <i>SLC4A11</i>. No changes in corneal endothelial cell morphology or density were observed in the heterozygous daughter. <b><i>Conclusion:</i></b> In contrast to the <i>Slc4a11</i><sup>-/-</sup> mouse, no abnormalities in daily renal ion excretion or polyuria were observed in the Harboyan syndrome patient. The mutation identified does not affect corneal endothelial cell morphology or density in the heterozygous state. © 2014 S. Karger AG, Basel
DOI: 10.17632/jy6hngx7df
title: Pictures of different types of diseased pigs

description: Collect and manually classify over 200 pictures of diseased pigs through internet and other means. Classify these images according to disease characterization and severity. Contains classified folders such as abnormal secretion，cenker，disfiguration，hernia ，presence of lumps，prolapses，skin changes.According to the classification of the condition, it includes 5 categories: Mild, Moderate, Severe, Critical,and Deceased.
DOI: 10.17632/sc7hvdzc94
title: Supplementary Material for "Comparative efficacy of biologics and oral agents in palmoplantar psoriasis and palmoplantar pustulosis: A systematic review and network meta-analysis of randomized clinical trials"

description: Supplementary tables and figures for the paper titled "Comparative efficacy of biologics and oral agents in palmoplantar psoriasis and palmoplantar pustulosis: A systematic review and network meta-analysis of randomized clinical trials".
DOI: 10.6084/m9.figshare.27635967.v1
title: Supplementary Material for: Omentin increases glucose uptake, but not insulin sensitivity in human myotubes dependent on extracellular lactotransferrin

description: Introduction: Omentin (intelectin-1) is an adipokine produced by the stromal vascular fraction of visceral adipose tissue and has been positively associated with insulin sensitivity. The underlying mechanism of action, however, is largely unknown. It has been described that omentin may increase insulin sensitivity and glucose uptake of adipocytes, but effects on other insulin-sensitive tissues such as skeletal muscle are unexplored. We therefore investigated effects of omentin on insulin sensitivity and metabolism of primary human myotubes. 
Methods: Primary human myotubes were treated with 0.5 or 2 µg/mL omentin and subsequently protein detection, glucose uptake assay, lactate assay and lipidomics analysis were performed.
Results: Omentin did not affect skeletal muscle insulin signaling, as assessed by basal and insulin-stimulated phosphorylation of IRS1 and AKT. Omentin increased basal, but not insulin-stimulated glucose uptake. While increased glycolytic activity was confirmed by elevated lactate release after omentin treatment, effects on cellular lipid composition were limited to an increase in total triacylglycerol concentration. Increased glucose uptake by omentin was counteracted by addition of extracellular lactotransferrin, which can bind to omentin.
Conclusions: Overall, increased basal glucose uptake in skeletal muscle cells suggests differential effects of omentin on insulin-sensitive tissues. Moreover, an involvement of lactotransferrin in omentin’s mechanism of action may partially explain contradictory results of epidemiological studies on the role of omentin in different diseases.
DOI: 10.17632/4b4fry23r3
title: Data for: Expert Algorithm for Substance Identification (EASI) using Mass Spectrometry: Parts I and II. J. Am. Soc. Mass Spectrom., 2023, Vol 34(7), 1428-1447.

description: Fragment ion abundances for 20 m/z values for 1019 EI-MS spectra, including 303 replicates of cocaine and 10 replicates of cocaine diastereomers.
Data are normalized to the base peak in each case. The data helps show the variance observed in operational crime labs over the course of several months for different drug standards. 
Details on data acquisition parameters etc. are provided in the two publications:
1) G. P. Jackson, S.A. Mehnert, J. T. Davidson, B. D. Lowe, E. A. Ruiz, J. R. King, "Expert Algorithm for Substance Identification (EASI) using Mass Spectrometry: Part I. Statistical Foundations in Unimolecular Reaction Rate Theory," J. Am. Soc. Mass Spectrom. 2023, 34(7), 1235-1247. https://doi.org/10.1021/jasms.3c00089
2) S.A. Mehnert, J. T. Davidson, A. Adeoye, B. D. Lowe, E. A. Ruiz, J.R. King, G. P. Jackson, "Expert Algorithm for Substance Identification (EASI) using Mass Spectrometry: Part II. Application to the Identification of Cocaine on Different Instruments using Binary Classification Models," J. Am. Soc. Mass Spectrom. 2023, 34(7), 1248-1262. https://doi.org/10.1021/jasms.3c00090
DOI: 10.17632/g2cszrfrww
title: Hazard Mitigation Assistance and National Flood Insurance Program Data

description: Publicly-available files for disaster declarations, Census data, Hazard Mitigation Assistance (HMA) grants (projects & properties), Emergency Management Performance Grants (EMPG), and National Flood Insurance Program (NFIP) claims.
DOI: 10.6084/m9.figshare.6819710.v1
title: Accessibility and topics of citations with identifiers in Wikipedia

description: About<sup>An extended version of the dataset "Citation with Identifiers" [1] with topic and accessibility information</sup>When possible, we associated each publication with identifier cited in Wikipedia with 1) the publication topic and 2) the information about its accessibility (e.g. if it has open access).TopicsWhen possible, we have assigned a topic to each publication, by looking at the main topics of the pages citing a publication. See [2] for more details on how we infer topics.AccessibilityWe mark each DOI publication as <i>Open Access</i> or <i>Closed Access</i> by merging our data with Unpaywall [3] data.<br>Data FormatThere is a file for each Wikipedia edition (e.g. English Wikipedia, Farsi Wikipedia). Each line contains the following tab-separated values:<b>page_id</b> - the id of the Wikipedia page citing the publication, see [4]<b>page_name</b> - the title of the Wikipedia page citing the publication<b>revision_id</b> - the id of the revision where the citation has been added, see [4]<b>timestamp</b> - the time when the revision has been saved<b>publication_type</b> - the type of the publication cited, it can be: <i>isbn,doi,pmid,pmc,arxiv</i><b>publication_id</b> - the identifier of the publication, format differs according to the type<b>topic</b> - publication topic inherited from the pages where it is cited. It can take one of the values at the top level of the Wikiprojects Hierarchy [5]<b>open_access</b> :<em>Open</em>: if the canonical version is open access at the source (journal); <em>Available</em>: if the canonical version at the source is behind a paywall, but an open access copy is available at a different location; <em>Closed</em>: if the canonical version at the source is behind a paywall and not open access copy was identified at a different location<b>open_access_url</b> - the url of the open access version of the publication, if 'open_access' is 'open' or 'available'VisualizationsVisualisations summarising the data in this repository can be found in this notebook: visualizations <br><br>[1] https://figshare.com/articles/Wikipedia_Scholarly_Article_Citations/1299540[2] https://meta.wikimedia.org/wiki/Research:Towards_Modeling_Citation_Quality[3] http://unpaywall.org/data-format[4] https://www.mediawiki.org/wiki/Manual:Revision_table[5] https://en.wikipedia.org/wiki/Wikipedia:WikiProject_Council/Directory
DOI: 10.17632/3fm8cbyrt7
title: Traffic accident and macroeconomic variables Jordan

description: Traffic accident data by type and macroeconomic variables for Jordan (2004-2022)
DOI: 10.17632/dpj5hb2p88
title: Data for: Influence of the Cigarette Smoking Trend on Carboxyhemoglobin Levels in Banked Blood – An Update Fourteen Years Later

description: Raw data for 2004-2005 and 2017 fraction of carboxyhemoglobin level in total hemoglobin.
DOI: 10.17632/wgs9wstv8g
title: Infrastructure Investment and Economic Growth of Bangladesh

description: All of the data are collected from World Development Indicators. Data retrieved in 2024 .
DOI: 10.6084/m9.figshare.19179119.v2
title: Hong Kong Solid Waste Emissions Estimation Tool Data for 4 Scenarios including BAU

description: These Solid Waste Estimation Tool (SWEET) documents are supplementary to the analysis of the study entitled "Decarbonizing the Hong Kong Municipal Solid Waste Sector: Pathways and Scenarios towards Carbon Neutrality"
DOI: 10.6084/m9.figshare.20449878.v1
title: Table ST2 - significant motifs shared between Sm1, Sm2 and Sm3 cells compared between control and APM using ATAC-seq and TFEA

description: Significantly enriched and depleted TFEA motifs (padj &lt; 1e-5) from SAEC-ATAC-seq analysis following APM exposure for all three SAECs, categorized by shared motifs to reflect the Venn diagrams in Figure 2B.
DOI: 10.6084/m9.figshare.27148515.v1
title: Prices of gold, Data.xlsx

description: Gold Prices Per Troy ounce refence www.gold.org ( World Gold Council)
DOI: 10.6084/m9.figshare.5127325.v1
title: Supplementary Material for: Bronchogenic Stress Cardiomyopathy: A Case Series

description: Despite a growing awareness of stress (takotsubo) cardiomyopathy, the diversity in precipitants beyond emotional distress remains under-appreciated. Emerging data implicate a differential influence of precipitant type on the variable presentations of stress cardiomyopathy. We outline 5 cases of stress cardiomyopathy where the precipitant was an acute exacerbation of chronic obstructive pulmonary disease treated with high-dose bronchodilator therapy. In this setting, an atypical and insidious presentation of the stress cardiomyopathy was consistently observed that was difficult to distinguish from the acute airway exacerbation itself, with an absence of chest pain in particular. Scrutiny of published single-case reports reveals a similar atypical presentation; this supports the existence of a novel bronchogenic subgroup of stress cardiomyopathy. A key role of repeat ECG evaluation in distinguishing protracted but uncomplicated bronchospasm from bronchogenic stress cardiomyopathy is highlighted. Further data are now required to examine whether high-dose β-agonist therapy is implicated in this association.
DOI: 10.17632/5gwd644gd9
title: Dataset of published original studies that evaluated quality of publicly-available information on first aid and/or cardiopulmonary resuscitation

description: This dataset contains characteristics of 44 original studies that evaluated quality of publicly-available information on first aid and/or cardiopulmonary resuscitation. The articles were published in English language between 1982 and 2023. Of the 44 articles, 30 were found through the Pubmed search. Additional 14 papers were revealed when screening bibliographies of the Pubmed-indexed articles.
DOI: 10.17632/ywhjnx4mst
title: Kynurenine importation by SLC7A11 propagates anti-ferroptotic signaling

description: IDO1 oxidizes tryptophan (TRP) to generate kynurenine (KYN), the substrate for 1-carbon metabolism and NAD biosynthesis and is implicated in pro-cancer pathophysiology and infection biology. However, the mechanistic relationships between IDO1 in amino acid depletion versus product generation have remained a long-standing mystery. We found an unrecognized link between IDO1 and cell survival mediated by KYN that serves as the source for molecules that inhibit ferroptotic cell death. We show this effect requires KYN export from IDO1-expressing cells, which is then available for non-IDO1-expressing cells via SLC7A11, the central transporter involved in ferroptosis suppression. Whether inside the “producer” IDO1+ cell or the “receiver” cell, KYN is converted into downstream metabolites, suppressing ferroptosis by ROS scavenging and activating an NRF2-dependent, AHR-independent cell protective pathway, including SLC7A11, which further propagates anti-ferroptotic signaling. IDO1 therefore controls a multi-pronged protection pathway from ferroptotic cell death, underscoring the need to re-focus the clinical use of IDO1 inhibitors in cancer.
DOI: 10.17632/z3pxwgvc73
title: Data for: Accumulation of diastereomers of anticoagulant rodenticides in game animals from suburban areas: implications for human consumers

description: Database of samples and analytical results
DOI: 10.6084/m9.figshare.12941717.v1
title: Supplementary Material for: Sensory Stimulation for Nursing-Home Residents: Systematic Review and Meta-Analysis of Its Effects on Sleep Quality and Rest-Activity Rhythm in Dementia

description: <b><i>Introduction:</i></b> Disrupted sleep-wake cycles might be associated with an exacerbation of behavioural disturbances and accelerate disease progression in dementia. The effect of sensory stimulation for improving sleep quality is unclear. <b><i>Methods:</i></b> A systematic literature search was performed and all studies examining the effects of a sensory stimulation intervention (i.e. bright light, massage, acupuncture, animal-assisted interventions) on rest-activity rhythm (RAR) and/or nocturnal restlessness in nursing-home residents with dementia were included. <b><i>Results:</i></b> Sensory stimulation was shown to improve nocturnal behavioural restlessness as well as sleep duration and continuation, but the effect on the number of awakenings, RAR, and daytime sleep was negligible. Notable was the high heterogeneity between studies regarding treatments and patients’ characteristics and sleep parameters. <b><i>Conclusion:</i></b> Sleep quality and nocturnal restlessness in nursing-home residents with dementia may benefit from sensory stimulation. An environment with sensory stimulation may prevent or improve sleep disturbances in nursing homes, and thereby contribute to a better quality of life for their patients.
DOI: 10.6084/m9.figshare.13382750.v2
title: Apple iPhone 12 Pro LiDAR Test Dataset

description: This datasets includes an mesh created with the LiDAR sensor of the Apple iPhone 12 Pro and a reference point cloud created with the SfM method to test the accuraccy of the LiDAR sensor. <br>