cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7923641.v1
title: Supplementary Material for: Der SV12: Entwicklung eines klinischen Inventars zur Erfassung von Sensibilität und deren Verarbeitungsproblematiken

description: <b><i>Hintergrund:</i></b> Zur Erfassung einer erhöhten Verarbeitungssensibilität bei Patienten in der stationären psychosomatischen Behandlung wurde ein Fragebogen entwickelt, der anders als Fragebögen zur Messung von Hochsensibilität die Konstrukte der Wahrnehmungssensibilität und Verarbeitungsproblematik trennen soll. <b><i>Methoden:</i></b> Zunächst wurde eine 30 Items umfassende Version an einer klinischen und einer nichtklinischen Stichprobe mit jeweils 1’103 Patienten erhoben und faktoranalytisch ausgewertet. Daraus konnte eine Kurzform mit 12 Items extrahiert werden, die im klini­schen Einsatz wiederholt validiert wurde. <b><i>Ergebnisse:</i></b> Sowohl in der klinischen und der nichtklinischen Stichprobe der Langform als auch in der Kurzform ergeben sich zwei Faktoren mit Cronbachs Alpha von 0,84 und 0,77, welche die Konstrukte der Sensibilität und Verarbeitungsproblematik eindeutig trennen. Weitere faktorielle Unterscheidungen waren nicht einheitlich. Kurz- und Langform zeigten mit Werten zwischen <i>r</i> = 0,87 und 0,94 eine hohe Übereinstimmung. Eine Referenzskala wurde ebenfalls erstellt. <b><i>Fazit:</i></b> Durch die differenzierte Erfassung der Sensibilität und der therapeutisch relevanten Aspekte der Verarbeitungspro­blematiken erscheint die Verwendung in der klinischen Dia­gnostik sinnvoll.
DOI: 10.17632/txt83yhs6t
title: PLPP1-deficiency-mediated ferroptosis induced by PD-1 signaling impairs antitumor activity of intratumoral CD8+ T cells

description: Raw mass spectrometry data of intratumoal and circulating CD8+ T cells, of PLPP1-sh CD8+ T cells, of spleen and tumor tissues, of tumor interstitial fluids from PLPP1fl/fl and Lckcre-PLPP1fl/fl mice, of PLPP1fl/fl and Lckcre-PLPP1fl/fl CD8+ T cells treated with AA or OA, of PLPP1-CART cells.
DOI: 10.17632/ydr28wvxfh
title: Reaumuria songarica Physiology Data

description: This dataset collects data on physiological, photosynthetic, anatomical and xylem hydraulic characteristics of live seedlings of Reaumuria songarica under graded drought stress.
DOI: 10.25452/figshare.plus.25114824.v1
title: Dataset supporting Figure 6 in "Pan-cortical 2-photon mesoscopic imaging and neurobehavioral alignment in awake, behaving mice"

description: Contains data from a single 1-photon widefield imaging experiment and a single Thorlabs mesoscope 2-photon imaging session from the same side mount mouse as in Figure 5, but corresponding to Figure 6. Included files contain imaging data, behavioral data, and python files with combined neurobehavioral data. Also contains DeepLabCut and BSOiD movies and analysis files corresponding to Figure 6 and to three other sessions from the same side mount mouse used, along with the target session, to train the BSOiD model used to fit the target session.Note that session names have the following format: "mouse#_bigEndianDate_cage#_info_session#_attempt#".Raw mesoscope imaging data is included in ScanImage rendered format as single big tiffs with the following nomenclature: "filename_2D.tiff".Mouse face and body cam images are included as standalone or concatenated .avi movie files, and behavioral data is included both as Spike2 files (smrx) and in exported form at Matlab data files (.mat).In all cases the first frame of the 2-photon movie, the right face/body movie, and Spike2 data are aligned to the first Labview-issued frameclock trigger (also recorded in Spike2, along with all other frameclock events). 2-photon triggers were sometimes incorrectly recorded in Spike2 (generally we recorded these as both events and waveforms), but were in all cases additionally exported from ScanImage tiff metadeta as timestamps (csv files ending in <i>header.csv). </i>Session start-time timestamps, also exported from ScanImage tiff metadata, appear as .txt files ending in "_starttime.txt".Preprocessed data (python) can be found in npy files with various names, each containing different subsets of variables relevant to the analysis. For each session, the npy file containing the string "standard_frames" contains the most complete, final stage set of preprocessed neurobehavioral data (in combined DataFrame format, exportable to nwb), including CCF/MMM alignments. The file containing the string "nb_dump" contains a large set of auxilliary variables that may be needed for additional preprocessing.Additional image files (tiff, png) and excel worksheets (xlsx, csv) containing high-level data summaries and records of intermediate analysis steps are also included.Please contact the authors for any additional clarifications as needed.See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.7052513
DOI: 10.6084/m9.figshare.12142053.v1
title: Proteomics Analysis of circulating extracellular vesicles isolated from nonalcoholic steatohepatitis (NASH) patients

description: Complete dataset of proteomics analysis of extracellular vesicles isolated from serum of patients with pre-cirrhotic NASH, cirrhotic NASH and healthy controls. Proteomics analysis was performed by using SOMAscan protein array and included over 1,300 unique analyses.
DOI: 10.6084/m9.figshare.15389319.v1
title: WLB and LIBRARIANS TURNOVER INTENTIONS 2.docx

description: This is an original research article entitled "Work-Life Balance and Turnover Intentions of Librarians in Nigerian Universities: Implications and Strategies for Improvement"
DOI: 10.6084/m9.figshare.7688840.v8
title: visual-search-nets

description: Data for https://github.com/NickleDave/visual-search-nets<br>
DOI: 10.17632/sfng2h249n
title: Core liver homeostatic co-expression networks are preserved but respond to perturbations in an organism and disease specific manner

description: Summary:
We used WGCNA and module preservation analyse on liver transcriptomic data of mice (GSE148080), human MAFLD/MeSH (GSE126848), and human liver cancer (hepatocellular carcinoma [HCC]). The liver cancer dataset includes: 
A) TCGA, LIHC_US; B) ICGC datasets (LIRI_JP, LICA_FR). 
We defined a core homeostatic system within the liver that are preserved between all these models. We found module-eigengene QTLs for some of the modules that were predictive of patients survival. The framework presented in the original paper (Core liver homeostatic co-expression networks are preserved but respond to perturbations in an organism and disease specific manner) can be used to understand homeostasis at systems levels in pre-clinical models and in humans.
DOI: 10.6084/m9.figshare.14642346.v1
title: Meg progeny of Meg grandmother.zip

description: Related to https://doi.org/10.1016/j.cub.2019.07.054.
DOI: 10.6084/m9.figshare.23884497.v1
title: Fossil hippopotamus rib histology data

description: Raw data from fossil hippopotamus rib histology: area of individual secondary osteons and counts of osteocyte lacunae from within each secondary osteon.
DOI: 10.6084/m9.figshare.27130536.v1
title: Data - SARS-CoV-2 WS Venezuela, PQ, COVID-19 cases

description: All data
DOI: 10.6084/m9.figshare.27292956.v4
title: Assessment of perioperative bleeding in pediatric osteogenesis imperfecta patients undergoing orthopedic surgeries: A single-center study

description: Since open posting of data on a repository was not included in the study information sheet at the time the study was done, data access will be granted once users have consented to the data sharing agreement and provided written plans and justification for what is proposed with the data. Data access may be obtained by submitting a request to the corresponding author.
DOI: 10.6084/m9.figshare.3573783.v1
title: New draft item

description: Results from interviewer-administered household level survey conducted among women in Aleta Wondo, Ethiopia to explore knowledge, attitudes, beliefs and behaviors related to tobacco use and secondhand smoke exposure.
DOI: 10.6084/m9.figshare.8217329.v1
title: Analysis of semi structured interviews

description: Analysis of semi structured interviews
DOI: 10.6084/m9.figshare.c.3666502_d2.v1
title: Egyptian fruit bat vocalizations metadata (Metadata.pdf)

description: Metadata for the file Annotations.csv
DOI: 10.17632/z64h7c965d
title: Data for: Source of supplemental dietary fat interacts with relative proportion of forage source in Holstein dairy cows: Production responses, and milk fat composition, rumen fermentation

description: Main manuscript
DOI: 10.6084/m9.figshare.16661374.v1
title: T1 scan - NIFTI anon & defaced

description: Anonymized T1 scan #1 The original DICOM was anonymized and converted to NIFTI. The NIFTI was than defaced.
DOI: 10.6084/m9.figshare.20486058.v2
title: Antibiotic susceptibility patterns of pathogens isolated from laboratory specimens at Livingstone Central Hospital in Zambia

description: Dataset describes the bacterial isoates from routine patient specimens and their susceptibility patterns towards commonly utilised antibiotics
DOI: 10.6084/m9.figshare.23995749.v1
title: HSE_Features.dat

description: This file contains the HSE features for all the protein sequences
DOI: 10.6084/m9.figshare.26264861.v1
title: Highly Efficient Narrow Bandgap Cu(In,Ga)Se2 Solar Cells with Enhanced Open Circuit Voltage for Tandem Application

description: The source data of the manuscript.
DOI: 10.6084/m9.figshare.27923271.v4
title: metadata and code

description: metadata and code
DOI: 10.6084/m9.figshare.28729517.v1
title: Additional file 1 of Mating from a female perspective: Do brown bear females play an active role in mate searching?

description: Supplementary file 1.
DOI: 10.6084/m9.figshare.c.3666502_d1.v1
title: Egyptian fruit bat vocalizations files information (FileInfo.csv)

description: File information for the file Annotaions.csv
DOI: 10.17632/pw8nkbhdwn
title: Fire vs Root

description: This study reveals the extent of damage to plant roots growing in peatlands during smoldering events.
DOI: 10.6084/m9.figshare.14139626.v1
title: Supplementary Material for: Association between Down Syndrome and Disorders of Sex Development: Report of Three Cases and Review of 188 Cases in the Literature

description: In this study, we present 3 cases of Down syndrome (DS) associated with disorders/differences of sex development (DSD) and review the literature on this topic. Case 1: 1-year-old child with male genitalia and DS phenotype, 47,XX,+21 karyotype and testicular DSD. Case 2: 11-month-old child with male genitalia and few DS dysmorphisms, 45,X/47,XY,+21 karyotype, and mixed gonadal dysgenesis. Case 3: 4-month-old child with female genitalia and DS phenotype, 47,XY,+21 karyotype and XY complete gonadal dysgenesis. In the literature, among 188 patients, 107 (57%) had Klinefelter syndrome and 61 (33%) Turner syndrome, 12 (6%) had mixed gonadal dysgenesis, 2 (1%) had partial androgen insensitivity, 2 (1%) ovotesticular DSD, and the others had congenital adrenal hyperplasia, XY partial gonadal dysgenesis, XY complete gonadal dysgenesis, and complete androgen insensitivity (1 case each). A typical DS phenotype was found in all individuals of the revision, with the exception of one case, but DSD features were not always reported. In conclusion, the association of DS with sex chromosome DSD is the most frequently observed, whereas associations with 46,XX and 46,XY DSD is extremely rare.
DOI: 10.6084/m9.figshare.12824801.v1
title: Gene database of Metallosphaera sedula strain ARS50-1

description: <i>Metallosphaera sedula </i>is a highly thermoacidophilic archaeon capable of mobilizing metals from ores, and therefore find use in the field of bioleaching. This resource sought to provide fundamental information about the genetic repertoire of <i>M. sedula</i> ARS50-1 by parsing the annotated genome sequence of the archaeon downloaded from Genbank. Comprising gene name, gene function, and gene sequence, the resource should be useful for molecular cloning workflow to heterologously express genes relevant to bioleaching in established microbial chassis such as <i>Escherichia coli</i>. In addition, the gene database should also inform functional genomics studies seeking to decode the genetic-physiological nexus of this thermoacidophile.
DOI: 10.6084/m9.figshare.17061335.v1
title: Supplementary Material for: The risk of cirrhosis and its complications based on PNPLA3 rs738409 G allele frequency

description: Background: Data regarding the influence of patatin-like phospholipase domain-containing 3 (PNPLA3) polymorphism for patients with liver cirrhosis (LC) are scarce. Objective: This study assesses the role of the PNPLA3 polymorphism for the development of LC and its complications by the findings of genetic examinations. Methods: Patients with LC caused by virus (n = 157), alcohol (n = 104), nonalcoholic fatty liver disease (NAFLD) (n = 106), or autoimmune disease (n = 33) and without LC (n = 128) were enrolled. LC were composed of the present and absent of complications, such as variceal bleeding, hepatic ascites, and/or hepatic encephalopathy. To assess the role of the PNPLA3 polymorphism, odds ratio (OR) for the rs738409 variant was calculated for the patients between (i) with LC and without LC in the entire cohort, and (ii) the present and absent of complications in the patients with LC. Results: There was a significant difference among the patients without LC and those with alcohol, NAFLD related LC in the frequency of G alleles (p &lt; 0.001, both). According to complications of LC, the OR for NAFLD related cirrhosis significantly increased in the presence of the two mutated alleles (OR = 3.165; p = 0.046) when the wild type was used as the reference. However, there were no significant risks for the complications in the virus and alcohol related cirrhosis unless there was a presence of G alleles. Conclusion: The PNPLA3 polymorphism was associated with the risk of NAFLD related LC and its complications.
DOI: 10.6084/m9.figshare.19493831.v1
title: Supplementary Material for: Lipidomic Profiling of Bronchoalveolar Lavage Fluid Extracellular Vesicles Indicates Their Involvement in Lipopolysaccharide-Induced Acute Lung Injury

description: Emerging data support the pivotal role of extracellular vesicles (EVs) in normal cellular physiology and disease conditions. However, despite their abundance, there is much less information about the lipid mediators carried in EVs, especially in the context of acute lung injury (ALI). Our data demonstrate that C57BL/6 mice subjected to intranasal <i>Escherichia coli</i> lipopolysaccharide (LPS)-induced ALI release, a higher number of EVs into the alveolar space, compared to saline-treated controls. EVs released during ALI originated from alveolar epithelial cells, macrophages, and neutrophils and carry a diverse array of lipid mediators derived from ω-3 and ω-6 polyunsaturated fatty acids (PUFA). The eicosanoids in EVs correlated with cellular levels of arachidonic acid, expression of cytosolic phospholipase A2, cyclooxygenase (COX), lipoxygenase (LOX), and cytochrome epoxygenase p450 proteins in pulmonary macrophages. Furthermore, EVs from LPS-toll-like receptor 4 knockout (TLR4<sup>-/-</sup>) mice contained significantly lower amounts of COX and LOX catalyzed eicosanoids and ω-3 PUFA metabolites. More importantly, EVs from LPS-treated wild-type mice increased TNF-α release by macrophages and reduced alveolar epithelial monolayer barrier integrity compared to EVs from LPS-treated TLR4<sup>−/−</sup> mice. In summary, our study demonstrates for the first time that the EV carried PUFA metabolite profile in part depends on the inflammatory status of the lung macrophages and modulates pulmonary macrophage and alveolar epithelial cell function during LPS-induced ALI.
DOI: 10.6084/m9.figshare.22110584.v4
title: MS raw data of metabolomics.xlsx

description: MS raw data of metabolomics
DOI: 10.6084/m9.figshare.22178414.v3
title: Data table

description: The excel dataset shows the data collected from 613 medical students from India about their knowledge, attitude and practice towards COVID-19
DOI: 10.6084/m9.figshare.24871914.v1
title: Supplemental Data for "A validated pangenome-scale metabolic model for the <i>Klebsiella pneumoniae </i>species complex."

description: <b>Summary</b>This figshare directory contains supplemental data for the publication "A validated pangenome-scale metabolic model for the <i>Klebsiella pneumoniae </i>species complex".DOI: https://doi.org/10.1099/mgen.0.001206The KpSC pan v2 model can be found here: https://github.com/kelwyres/KpSC-pan-metabolic-modelAccess Bactabolize here: https://github.com/kelwyres/Bactabolize_________________________________________________________<b>Supplementary data</b>MEMOTE-Reports.zip contains four MEMOTE reports for each reference model (iYL1228, iKp1289, KpSC pan v1 & KpSC pan v2).Raw-Growth-Assay-Data.zip contains the growth assay data as both summary .xlsx files for each condition, in addition to the raw Tecan OD<sub>600</sub> values._________________________________________________________<b>Strain-specific models</b>iYL1228-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in iYL1228-reaction-presence-absence-matrix.csv and iYL1228-gene-presence-absence-matrix.csv respectively.iKP1289-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in iKp1289-reaction-presence-absence-matrix.csv and iKp1289-gene-presence-absence-matrix.csv respectively.KpSC-pan-v1-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in KpSC-pan-v1-reaction-presence-absence-matrix.csv and KpSC-pan-v1-gene-presence-absence-matrix.csv respectively.KpSC-pan-v2-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in KpSC-pan-v2-reaction-presence-absence-matrix.csv and KpSC-pan-v2-gene-presence-absence-matrix.csv respectively._________________________________________________________<b>Binary data to accompany supplementary tables</b>Binary-Predicted-Growth-Phenotypes-to-accompany-Table-S4.xlsx<b> </b>contains binary growth predictions for each strain-specific model, which were used to inform the data contained in Table S4.Aerobic-Carbon-Model-Predictions-to-accompany-Table-S6.xlsx contains binary aerobic growth phenotype data and accuracy classifications for each strain-specific model, which were used to inform the data contained in Table S6.Anaerobic-Carbon-Model-Predictions-to-accompany-Table-S7.xlsx contains binary anaerobic growth phenotype data and accuracy classifications for each strain-specific model, which were used to inform the data contained in Table S7.
DOI: 10.6084/m9.figshare.28881338.v1
title: Supplementary Material for: Dexmedetomidine as a Promising Neuroprotective Sedoanalgesic in Neonatal Therapeutic Hypothermia: A Systematic Review and Meta-Analysis

description: Background: Hypoxic-ischemic encephalopathy (HIE) is a leading cause of neonatal mortality and neurodevelopmental disabilities. Therapeutic hypothermia (TH) is the standard of care, but optimized sedoanalgesic strategies remain critical. Dexmedetomidine shows promise as an alternative to traditional sedatives, but its role in this context remains systematically underexplored.

Objective: This meta-analysis evaluates the safety and efficacy of dexmedetomidine in neonates undergoing TH for HIE.

Methods: A systematic search of Medline, Scopus, EMBASE, WOS, ClinicalTrials, and Cochrane Library identified studies published from January 2014 to October 2024. Studies focusing on dexmedetomidine in neonatal TH with relevant outcomes were included. Selection followed PRISMA guidelines, with independent quality assessments. The protocol was registered in PROSPERO (CRD42024605817). Results are presented as meta-analyses or evidence-based discussions when pooling was unfeasible.

Results: Seven studies involving 609 neonates were included: four cohort studies (n = 486) and three case series (n = 123). Dexmedetomidine provided comparable sedation to traditional agents (MD = -0.01 [-0.68 - 0.66], p = 0.99) and significantly reduced seizure risk (OR 0.31 [0.10 - 0.98], p &lt; 0.05) with a non-inferior safety profile. Trends suggested shorter duration of mechanical ventilation and time to full enteral feeding. Substantial heterogeneity in dosing protocols highlights the need for standardization.

Conclusions: Dexmedetomidine appears to be a safe and promising sedative in neonatal TH for HIE, with potential neuroprotective, respiratory, and gastrointestinal benefits. Despite limited evidence and the absence of randomized clinical trials, its non-inferior efficacy and safety warrant further exploration and urges the development of standardized dosing protocols.
DOI: 10.6084/m9.figshare.5970886.v2
title: Over.zip

description: Overestimation Group
DOI: 10.25403/upresearchdata.25397944.v1
title: Intervention to develop the brain-based and science knowledge (TBBask) framework to enhance science performance

description: An interpretative case study approach was employed, involving 41 first-year Engineering Science students from the University of Technology in South Africa to fulfil the goals of this study. Data collection utilised a mixed-methods approach, combining quantitative structured and unstructured questionnaires with qualitative unstructured, open-ended questionnaires. This research’s philosophical assumptions were grounded in pragmatism, incorporated into the suggested framework.
DOI: 10.6084/m9.figshare.17032895.v1
title: PAIR-R24M-Dataset.zip

description: The PAIR-R24M (Paired Acquisition of Interacting oRganisms - Rat) dataset for multi-animal 3D pose estimation contains 24.3 million frames of RGB video and 3D ground-truth motion capture of dyadic interactions in laboratory rats. PAIR-R24M contains data from 18 distinct pairs of rats and 24 different viewpoints. We annotated the data with 11 behavioral labels and 3 interaction categories to facilitate benchmarking in rare but challenging behaviors.
DOI: 10.6084/m9.figshare.26144068.v1
title: <b>Meiofauna COX1 sequences from manuscript "Enhancing metabarcoding efficiency and ecological insights through integrated taxonomy and DNA reference barcoding: a case study on beach meiofauna"; </b>https://doi.org/10.1101/2024.04.01.587521

description: <b>Meiofauna COX1 sequences from manuscript "Enhancing metabarcoding efficiency and ecological insights through integrated taxonomy and DNA reference barcoding: a case study on beach meiofauna"</b>.; https://doi.org/10.1101/2024.04.01.587521