cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10041122.v1
title: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
DOI: 10.6084/m9.figshare.10041143
title: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
DOI: 10.6084/m9.figshare.10041143.v1
title: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
DOI: 10.6084/m9.figshare.10041149
title: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
DOI: 10.6084/m9.figshare.10041149.v1
title: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
DOI: 10.5281/zenodo.8372431
title: A multiomic atlas of the aging hippocampus reveals molecular rejuvenation in response to environmental stimulation (datasets and additional files)

description: Aging is a universal biological phenomenon linked to many diseases, such as cancer or neurodegeneration. However, the molecular mechanisms underlying aging, or how lifestyle interventions such as cognitive stimulation can ameliorate this process, are yet to be clarified. Here, we performed a multi-omic profiling, including RNA-seq, ATAC-seq, ChIP-seq, EM-seq, SWATH-MS and single cell Multiome scRNA and scATAC-seq, in the dorsal hippocampus of young and old mouse subjects which were subject to cognitive stimulation using the paradigm of environmental enrichment. In this study we were able to describe the epigenomic landscape of aging and cognitive stimulation.


This dataset contains information related to preprocessed datasets and additional files mentioned in the original manuscript.
DOI: 10.5281/zenodo.8372432
title: A multiomic atlas of the aging hippocampus reveals molecular rejuvenation in response to environmental stimulation (datasets and additional files)

description: Aging is a universal biological phenomenon linked to many diseases, such as cancer or neurodegeneration. However, the molecular mechanisms underlying aging, or how lifestyle interventions such as cognitive stimulation can ameliorate this process, are yet to be clarified. Here, we performed a multi-omic profiling, including RNA-seq, ATAC-seq, ChIP-seq, EM-seq, SWATH-MS and single cell Multiome scRNA and scATAC-seq, in the dorsal hippocampus of young and old mouse subjects which were subject to cognitive stimulation using the paradigm of environmental enrichment. In this study we were able to describe the epigenomic landscape of aging and cognitive stimulation.


This dataset contains information related to preprocessed datasets and additional files mentioned in the original manuscript.
DOI: 10.25387/g3.13186907
title: Supplemental Material for Li et al., 2020

description: Supplementary file for article entitled “Draft genome of the herbaceous bamboo <i>Raddia distichophylla</i>”.
DOI: 10.25387/g3.13186907.v1
title: Supplemental Material for Li et al., 2020

description: Supplementary file for article entitled “Draft genome of the herbaceous bamboo <i>Raddia distichophylla</i>”.
DOI: 10.6084/m9.figshare.10041173
title: MOESM10 of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: Additional file 10: Expression profiles of known miRNAs and novel miRNAs and their targets. (a) Kn-miRs and targets; (b) nov-miRs and targets. (XLS 713 KB)
DOI: 10.6084/m9.figshare.10041173.v1
title: MOESM10 of Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

description: Additional file 10: Expression profiles of known miRNAs and novel miRNAs and their targets. (a) Kn-miRs and targets; (b) nov-miRs and targets. (XLS 713 KB)
DOI: 10.15468/dl.zq9n8h
title: Occurrence Download

description: A dataset listing the 7438 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Dutch Foundation for Applied Water Research (STOWA) - Limnodata Neerlandica"
 ]
}

 The dataset's 7438 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072295-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akmdf9
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Umbilicaria cylindrica (L.) Delise ex Duby",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 173 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002337-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x2ckzj
title: Occurrence Download

description: A dataset containing 5095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1970-2020",
 "HasCoordinate is true",
 "TaxonKey is Prunus armeniaca L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5095 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018740-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5jfvyd
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Russian Federation",
 "Country is Türkiye",
 "Country is unknown or invalid",
 "Country is Georgia"
 ]
 },
 "TaxonKey is Picea orientalis (L.) Peterm."
 ]
}

 The dataset includes 270 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055789-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yspw6q
title: Occurrence Download

description: A dataset containing 1594 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudosphinx tetrio Linnaeus, 1771"
 ]
}

 The dataset includes 1594 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072290-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hde8d
title: Occurrence Download

description: A dataset containing 3940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus pardalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 3940 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002339-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k766m3
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dermatemydidae"
 ]
}

 The dataset includes 158 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036009-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ympxkt
title: Occurrence Download

description: A dataset containing 14551 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of plant species in the proposed Ankasa-Bia-Krokosua ecological corridor of Ghana"
 ]
}

 The dataset includes 14551 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220407-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4q7gh
title: Occurrence Download

description: A dataset containing 2088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 {
 "or" : [
 "Geometry POLYGON((62.90143 2.13214,100.39309 2.13214,100.39309 38.73508,62.90143 38.73508,62.90143 2.13214))",
 "Geometry POLYGON((-107.02367 33.54426,-94.80991 33.54426,-94.80991 41.51579,-107.02367 41.51579,-107.02367 33.54426))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "TaxonKey is Euphorbia"
 ]
}

 The dataset includes 2088 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062823-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qa9358
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crassula elegans Schönland & Baker fil.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 39 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315679-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rdgzbg
title: Occurrence Download

description: A dataset containing 921 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bromus lanatus Kunth"
 ]
}

 The dataset includes 921 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286008-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9r4qfz
title: Occurrence Download

description: A dataset listing the 128 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of plant species in the proposed Ankasa-Bia-Krokosua ecological corridor of Ghana"
 ]
}

 The dataset's 128 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220408-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jg23hx
title: Occurrence Download

description: A dataset containing 7273 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alkekengi officinarum Moench"
 ]
}

 The dataset includes 7273 records from 173 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055038-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8ujjj
title: Occurrence Download

description: A dataset containing 1514183 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Egretta garzetta (Linnaeus, 1766)"
 ]
}

 The dataset includes 1514183 records from 650 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315698-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8wm2c
title: Occurrence Download

description: A dataset containing 1215 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bauhinia brachycarpa Wall. ex Benth."
 ]
}

 The dataset includes 1215 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297414-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmg34b
title: Occurrence Download

description: A dataset containing 1309 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tragulus kanchil (Raffles, 1821)"
 ]
}

 The dataset includes 1309 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0239359-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9wae4
title: Occurrence Download

description: A dataset containing 3216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platyrrhinus helleri (Peters, 1866)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 3216 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008860-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.phmtz3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bergenia ligulata (Wall.) Engl.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315708-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhkaj4
title: Occurrence Download

description: A dataset containing 57539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Falco vespertinus Linnaeus, 1766",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 57539 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051412-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6472417
title: cschell/who-is-alyx: v1.0

description: This dataset contains over 57 hours of motion and eye-tracking data from 37 players of the virtual reality game "Half-Life: Alyx". Each player played the game on two separate days for about 45 minutes using a HTC Vive Pro.
DOI: 10.5281/zenodo.7663984
title: cschell/who-is-alyx: v2.0

description: This dataset contains over 110 hours of motion, eye-tracking and physiological data from 71 players of the virtual reality game “Half-Life: Alyx”. Each player played the game on two separate days for about 45 minutes using a HTC Vive Pro.
DOI: 10.5281/zenodo.8379914
title: cschell/who-is-alyx: v2.1

description: This dataset contains over 110 hours of motion, eye-tracking and physiological data from 71 players of the virtual reality game “Half-Life: Alyx”. Each player played the game on two separate days for about 45 minutes using a HTC Vive Pro.
DOI: 10.5281/zenodo.6472410
title: cschell/who-is-alyx: v2.1

description: This dataset contains over 110 hours of motion, eye-tracking and physiological data from 71 players of the virtual reality game “Half-Life: Alyx”. Each player played the game on two separate days for about 45 minutes using a HTC Vive Pro.
DOI: 10.5281/zenodo.8205254
title: Biosynthetic Gene Cluster Synteny - Orthologous Polyketide Synthases in Hypogymnia physodes, Hypogymnia tubulosa and Parmelia sulcata

description: Supplementary Material of Publication
DOI: 10.5281/zenodo.8205255
title: Biosynthetic Gene Cluster Synteny - Orthologous Polyketide Synthases in Hypogymnia physodes, Hypogymnia tubulosa and Parmelia sulcata

description: Supplementary Material of Publication
DOI: 10.5281/zenodo.8207823
title: Biosynthetic Gene Cluster Synteny - Orthologous Polyketide Synthases in Hypogymnia physodes, Hypogymnia tubulosa and Parmelia sulcata

description: Supplementary Material of Publication
DOI: 10.5281/zenodo.8379938
title: Biosynthetic Gene Cluster Synteny - Orthologous Polyketide Synthases in Hypogymnia physodes, Hypogymnia tubulosa and Parmelia sulcata

description: Supplementary Material of Publication
DOI: 10.34740/kaggle/dsv/6546111
title: 2021 World Population (updated daily)
DOI: 10.17897/439e-hj92
title: GeoBasis Disko - Hydrology - RE-WaterDischarge_10min

description: Water discharge in the river Røde Elv (RE) is based on the logged water level data and a relation between measured discharge and water level (Q/h relation). The Q/h relation is made in close collaboration with Asiaq, Greenland Survey. The calculated discharge data are given in West Greenland Time (UTC-3). Data was calculated for every 10 minutes up to 2017. From 2017 and onwards the time step was 15 minutes (see also WaterDischarge_15min). Data cover the main runoff season. However, the start and the end of the annual time series refer to the time when the automatic sensors were deployed and removed from the water. For a better estimation of the break-up and freeze-in period, please contact the GeoBasisDisko data manager. More data about river water in Røde Elv are found under Hydrology (RiverWaterChemistry, SuspendedSediment, Multisensor). Hydrology:Hydrology GeoBasis Disko:The GeoBasis monitoring programme focuses on selected abiotic characteristics in order to describe the state of Greenlandic terrestrial environments and their potential feedback effects in a changing climate. Monitored plot data is up-scaled to a landscape level and is used to improve ecosystem models to be able to quantify these feedback mechanisms. The GeoBasis programme provides an active response to recommendations in international assessments such as ACIA and SWIPA; and is continuously being adapted based on AMAP and other international founded recommendations. Furthermore, the GeoBasis programme is directly involved in several international networks and research projects (e.g. the Circumpolar Active Layer Monitoring (CALM) programme, the Nordic Centre of Excellence DEFROST, the Danish Centre of Excellence CENPERM, the EU-projects PAGE21 and INTERACT, and the Arctic Research Centre at Aarhus University). The GeoBasis programme is divided into a number of sub-groups, including:
DOI: 10.17897/c99h-dp15
title: GeoBasis Disko - Hydrology - RE-WaterDischarge_15min

description: Water discharge in Røde Elv (RE) is based on water level registrations and a relation between measured discharge (Q) and water level (h). The Q/h relation is made in close collaboration with Asiaq, Greenland Survey. The timestamp of the calculated discharge data are West Greenland Time (UTC-3). Data was calculated for every 10 minutes up to 2017 (WaterDischarge_10min). From 2017 and onwards the time step was 15 minutes. Data cover the main runoff season. However, the start and the end of the annual time series refer to the time when the automatic sensors were deployed and removed from the water. For a better estimation of the break-up and freeze-in period, please contact the GeoBasis Disko data manager. The drainage basin of this Røde Elv site is approximately 100 km2 and varies in elevation from 0-800 m above sea level. Find more data about river water in Røde Elv under Hydrology (RiverWaterChemistry, SuspendedSediment, and Multisensor). Hydrology:Hydrology GeoBasis Disko:The GeoBasis monitoring programme focuses on selected abiotic characteristics in order to describe the state of Greenlandic terrestrial environments and their potential feedback effects in a changing climate. Monitored plot data is up-scaled to a landscape level and is used to improve ecosystem models to be able to quantify these feedback mechanisms. The GeoBasis programme provides an active response to recommendations in international assessments such as ACIA and SWIPA; and is continuously being adapted based on AMAP and other international founded recommendations. Furthermore, the GeoBasis programme is directly involved in several international networks and research projects (e.g. the Circumpolar Active Layer Monitoring (CALM) programme, the Nordic Centre of Excellence DEFROST, the Danish Centre of Excellence CENPERM, the EU-projects PAGE21 and INTERACT, and the Arctic Research Centre at Aarhus University). The GeoBasis programme is divided into a number of sub-groups, including:
DOI: 10.34740/kaggle/dsv/6546119
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.6809478
title: Integrative structure determination of PTBP1-viral IRES complex in solution

description: Data underlying the ensemble structure model of the RNA-binding protein PTBP1 in complex with the internal ribosome entry site (IRES) of encephalomyocarditis virus (EMCV) RNA. Primary DEER-EPR data underlying site-to-site distance distributions for 35 spin-label pairs and corresponding distanace distributions Small-angle neutron scattering (SANS) curves a two detector distances with corresponding resolution files and a small-angle x-ray scattering (SAXS) curve Restraint file for the ensemble fit with MMMx software, specifying the mean distances and standrad deviations of distance distributions that were also used for specifying lower and upper distance bounds in CYANA generation of the raw ensemble
DOI: 10.5281/zenodo.7798970
title: Integrative structure determination of PTBP1-viral IRES complex in solution

description: Ensemble structure model of the RNA-binding protein PTBP1 in complex with the internal ribosome entry site (IRES) of encephalomyocarditis virus (EMCV) RNA and data underlying these models. Main ensemble based on all restraints (corresponding to Figure 2 in the associated paper) Ensemble obtained with only DEER distance distribution restraints corresponding to Figure S7(A) in the Supplementary Material of the associated paper Validation ensemble obtained with all restraints after removing the conformers of the main ensemble from the raw ensemble corresponding to Figure S7(B) inthe Supplementary Material of the associated paper Ensemble obtianed with all restraints by fitting populations with a non-negative linear least squares (NNLLSQ) approach corresponding to Figure S8(A) in ths Supplementary Material of the associated paper Primary DEER-EPR data underlying site-to-site distance distributions for 35 spin-label pairs and corresponding distanace distributions Small-angle neutron scattering (SANS) curves a two detector distances with corresponding resolution files and a small-angle x-ray scattering (SAXS) curve Restraint file for the ensemble fit with MMMx software, specifying the mean distances and standrad deviations of distance distributions that were also used for specifying lower and upper distance bounds in CYANA generation of the raw ensemble All ensembles are ZIP files containing single PDB files for all conformers and an ensemble specification that reports populations for all conformers.
description: additional funding: Schweizerischer Nationalfonds zur Fórderung der Wissenschaften 31003A-170130 Schweizerischer Nationalfonds zur Förderung der Wissenschaften Sinergia CRSII5-170976 ETH Research Grant 0-2066-14