cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0193867.10fu
title: SH0193867.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0193868.10fu
title: SH0193868.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0193869.10fu
title: SH0193869.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0193870.10fu
title: SH0193870.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0193871.10fu
title: SH0193871.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0193872.10fu
title: SH0193872.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.24159442.v1
title: Additional file 2 of Efficacy and safety of intranasal agents for the acute treatment of migraine: a systematic review and network meta-analysis

description: Additional file 2.
DOI: 10.15468/dl.dw68wt
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron erastum Balf.fil. & Forrest"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069836-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26063095
title: Triflic Anhydride Promoted Decarboxylative Functionalization of α-Amino Acids

description: Decarboxylation of naturally abundant amino acids along with subsequent inter- or intramolecular reaction cascade offers rapid synthesis of a variety of complex and high-value amine derivatives. Previous strategies show a high dependency on transition metals, tedious operations, or harsh conditions. Herein, we reported a novel reaction cascade of α-amino acids decarboxylation and nucleophilic functionalization characterized by transition-metal-free, convenient operation, environmentally benign, and mild conditions.
DOI: 10.6084/m9.figshare.24159189
title: Additional file 1 of A glycosylated Phr1 protein is induced by calcium stress and its expression is positively controlled by the calcium/calcineurin signaling transcription factor Crz1 in Candida albicans

description: Additional file 1: Figure S1. Transcript levels of PHR1genein the wild type SN148 and its isogenic mutant crz1/crz1cells growing in log phase in the presence or absence of0.2M CaCl2for 2 hours. Figure S2. Knockoutstrategy of two alleles of PHR1and PCR confirmation of genotypes. Figure S3. Chromosomally C-terminal 3xHA tagging of PHR1. Figure S4. Deletion of PHR1leads to sensitivity of C. albicanscells toalkaline stress. Figure S5. Cation sensitivityofCandida albicanscells lacking a functional PHR1gene. Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.24159189.v1
title: Additional file 1 of A glycosylated Phr1 protein is induced by calcium stress and its expression is positively controlled by the calcium/calcineurin signaling transcription factor Crz1 in Candida albicans

description: Additional file 1: Figure S1. Transcript levels of PHR1genein the wild type SN148 and its isogenic mutant crz1/crz1cells growing in log phase in the presence or absence of0.2M CaCl2for 2 hours. Figure S2. Knockoutstrategy of two alleles of PHR1and PCR confirmation of genotypes. Figure S3. Chromosomally C-terminal 3xHA tagging of PHR1. Figure S4. Deletion of PHR1leads to sensitivity of C. albicanscells toalkaline stress. Figure S5. Cation sensitivityofCandida albicanscells lacking a functional PHR1gene. Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.26063095.v2
title: Triflic Anhydride Promoted Decarboxylative Functionalization of α-Amino Acids

description: Decarboxylation of naturally abundant amino acids along with subsequent inter- or intramolecular reaction cascade offers rapid synthesis of a variety of complex and high-value amine derivatives. Previous strategies show a high dependency on transition metals, tedious operations, or harsh conditions. Herein, we reported a novel reaction cascade of α-amino acids decarboxylation and nucleophilic functionalization characterized by transition-metal-free, convenient operation, environmentally benign, and mild conditions.
DOI: 10.6084/m9.figshare.26063095.v1
title: Transition-metal-free decarboxylative functionalization of α-amino acids

description: Decarboxylation of naturally abundant amino acids along with subsequent inter- or intramolecular reaction cascade offers rapid synthesis of a variety of complex and high-value amine derivatives. Previous strategies show a high dependency on transition metals, tedious operations, or harsh conditions. Herein, we reported a novel reaction cascade of α-amino acids decarboxylation and nucleophilic functionalization characterized by transition-metal-free, convenient operation, environmentally benign, and mild conditions.
DOI: 10.6084/m9.figshare.24159289
title: Additional file 1 of Analysis of a macrophage carbamylated proteome reveals a function in post-translational modification crosstalk

description: Additional file 1: Table S1. Identified and quantified carbamylated peptides in RAW 264.7 cells treated with bacterial lipopolysaccharide. Table S2. Identified and quantified acetylated peptides in RAW 264.7 cells treated with bacterial lipopolysaccharide. Table S3. Identified and quantified phosphopeptides in RAW 264.7 cells treated with bacterial lipopolysaccharide.
DOI: 10.6084/m9.figshare.24159289.v1
title: Additional file 1 of Analysis of a macrophage carbamylated proteome reveals a function in post-translational modification crosstalk

description: Additional file 1: Table S1. Identified and quantified carbamylated peptides in RAW 264.7 cells treated with bacterial lipopolysaccharide. Table S2. Identified and quantified acetylated peptides in RAW 264.7 cells treated with bacterial lipopolysaccharide. Table S3. Identified and quantified phosphopeptides in RAW 264.7 cells treated with bacterial lipopolysaccharide.
DOI: 10.6084/m9.figshare.24159235
title: Additional file 1 of Genome sequencing-based transcriptomic analysis reveals novel genes in Peucedanum praeruptorum

description: Additional file 1:Figure S1. Expression profile analysis of ATG family genes before and after bolting. Table S1. KO-enriched terms and genes in the two groups of samples before and after bolting. Table S2. GO functional classification terms and genes of two groups of samples before and after bolting. Table S3. Differentially expressed transcription factors in two samples before and after bolting. Table S4. Source and target genes for differential protein interaction network construction. Table S5. FPKM values and annotation information of five gene families in two samples before and after bolting.
DOI: 10.6084/m9.figshare.24159235.v1
title: Additional file 1 of Genome sequencing-based transcriptomic analysis reveals novel genes in Peucedanum praeruptorum

description: Additional file 1:Figure S1. Expression profile analysis of ATG family genes before and after bolting. Table S1. KO-enriched terms and genes in the two groups of samples before and after bolting. Table S2. GO functional classification terms and genes of two groups of samples before and after bolting. Table S3. Differentially expressed transcription factors in two samples before and after bolting. Table S4. Source and target genes for differential protein interaction network construction. Table S5. FPKM values and annotation information of five gene families in two samples before and after bolting.
DOI: 10.6084/m9.figshare.26737218
title: Additional file 12 of Comprehensive meta-analysis of severe fever with thrombocytopenia syndrome virus infections in humans, vertebrate hosts and questing ticks

description: Additional file 12: Table S8. Sensitivity analysis for the pooled prevalence estimates of SFTSV in humans, vertebrate hosts and ticks.
DOI: 10.15468/dl.mbc8hv
title: Occurrence Download

description: A dataset containing 25974 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Long-term Bird Census in Cigu 2004-2017"
 ]
}

 The dataset includes 25974 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069837-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26737197
title: Additional file 5 of Comprehensive meta-analysis of severe fever with thrombocytopenia syndrome virus infections in humans, vertebrate hosts and questing ticks

description: Additional file 5: Table S4. Multivariable meta-regression analysis for RNA prevalence of SFTSV in humans.
DOI: 10.6084/m9.figshare.26737200
title: Additional file 6 of Comprehensive meta-analysis of severe fever with thrombocytopenia syndrome virus infections in humans, vertebrate hosts and questing ticks

description: Additional file 6: Figure S2. Forest plots depicting the prevalence of SFTSV in vertebrate hosts. The numbers in square brackets correspond to the study ID in Table S2.
DOI: 10.15468/dl.gd2rzc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.689644 -33.864935, 146.689644 -33.871672, 146.694136 -33.871672, 146.694136 -33.864935, 146.689644 -33.864935))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069838-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.24159423
title: Additional file 2 of A toxic gain-of-function mechanism in C9orf72 ALS impairs the autophagy-lysosome pathway in neurons

description: Additional file 2: Table S1. List of reagents and resources.
DOI: 10.6084/m9.figshare.24159423.v1
title: Additional file 2 of A toxic gain-of-function mechanism in C9orf72 ALS impairs the autophagy-lysosome pathway in neurons

description: Additional file 2: Table S1. List of reagents and resources.
DOI: 10.6084/m9.figshare.24159426
title: Additional file 3 of A toxic gain-of-function mechanism in C9orf72 ALS impairs the autophagy-lysosome pathway in neurons

description: Additional file 3: Table S2. Clinical information of post-mortem samples.
DOI: 10.6084/m9.figshare.24159426.v1
title: Additional file 3 of A toxic gain-of-function mechanism in C9orf72 ALS impairs the autophagy-lysosome pathway in neurons

description: Additional file 3: Table S2. Clinical information of post-mortem samples.
DOI: 10.6084/m9.figshare.24159247
title: Additional file 2 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 2: Characteristics of included systematic reviews
DOI: 10.6084/m9.figshare.24159247.v1
title: Additional file 2 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 2: Characteristics of included systematic reviews
DOI: 10.6084/m9.figshare.24159250
title: Additional file 3 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 3: Characteristics of included cohort studies
DOI: 10.6084/m9.figshare.24159250.v1
title: Additional file 3 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 3: Characteristics of included cohort studies
DOI: 10.6084/m9.figshare.24159256
title: Additional file 4 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 4: Characteristics of included electronic patient record reviews
DOI: 10.6084/m9.figshare.24159256.v1
title: Additional file 4 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 4: Characteristics of included electronic patient record reviews
DOI: 10.6084/m9.figshare.24159259
title: Additional file 5 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 5: Characteristics of included abstracts
DOI: 10.6084/m9.figshare.24159259.v1
title: Additional file 5 of Risk stratification tools for patients with syncope in emergency medical services and emergency departments: a scoping review

description: Additional file 5: Characteristics of included abstracts
DOI: 10.6084/m9.figshare.24165239
title: Additional file 2 of Highly sex specific gene expression in Jojoba

description: Additional file 2: Table S1. The quality check and trimming details for raw RNA reads from 30 flower samples. Table S2. KEGG pathways of down regulated DEGs male flowers relative to female jojoba plants. Table S3. The top six transcription factors families (MYB, ERF, Bhlh, NAC, WRKY, MADS-box). Table S4. Plant hormone associated with flowering in Jojoba plant. Table S5. Coverage, FPKM and TPM of 12 male-specific genes of Y1 and Y2 regions (chr9) at S2, S3 and S4 stages. Table S6 . Gene ontology details of known genes of 51 male specific recognised by Pannzer2. Table S7. Total of 100 up- regulated GO terms detected by Fold-Change-Specific Enrichment Analysis (FSEA).Table S8.Total of 42 down- regulated GO terms detected by Fold-Change-Specific Enrichment Analysis (FSEA).
DOI: 10.6084/m9.figshare.24165239.v1
title: Additional file 2 of Highly sex specific gene expression in Jojoba

description: Additional file 2: Table S1. The quality check and trimming details for raw RNA reads from 30 flower samples. Table S2. KEGG pathways of down regulated DEGs male flowers relative to female jojoba plants. Table S3. The top six transcription factors families (MYB, ERF, Bhlh, NAC, WRKY, MADS-box). Table S4. Plant hormone associated with flowering in Jojoba plant. Table S5. Coverage, FPKM and TPM of 12 male-specific genes of Y1 and Y2 regions (chr9) at S2, S3 and S4 stages. Table S6 . Gene ontology details of known genes of 51 male specific recognised by Pannzer2. Table S7. Total of 100 up- regulated GO terms detected by Fold-Change-Specific Enrichment Analysis (FSEA).Table S8.Total of 42 down- regulated GO terms detected by Fold-Change-Specific Enrichment Analysis (FSEA).
DOI: 10.6084/m9.figshare.24165125
title: Additional file 1 of Patient-reported outcome measures in functional dyspepsia: a systematic review and COSMIN analysis

description: Additional file 1.
DOI: 10.6084/m9.figshare.24165125.v1
title: Additional file 1 of Patient-reported outcome measures in functional dyspepsia: a systematic review and COSMIN analysis

description: Additional file 1.
DOI: 10.15468/dl.j4mvh5
title: Occurrence Download

description: A dataset containing 2579 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus hirta Vahl"
 ]
}

 The dataset includes 2579 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069839-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24165136
title: Additional file 2 of Prediction of plant secondary metabolic pathways using deep transfer learning

description: Additional file2. Supplementary tables.
DOI: 10.6084/m9.figshare.24165136.v1
title: Additional file 2 of Prediction of plant secondary metabolic pathways using deep transfer learning

description: Additional file2. Supplementary tables.
DOI: 10.15468/dl.vsrv22
title: Occurrence Download

description: A dataset containing 5089 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United Kingdom of Great Britain and Northern Ireland, Isle of Man, Ireland, Guernsey, Jersey)",
 "OccurrenceStatus is Present",
 "TaxonKey is Boletus edulis Bull."
 ]
}

 The dataset includes 5089 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069840-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24165001.v1
title: Additional file 1 of Identification of novel protein biomarkers and drug targets for colorectal cancer by integrating human plasma proteome with genome

description: Additional file 1: Table S1. Summary of colorectal cancer (CRC), colon cancer, and rectal cancer datasets used in the current study. Table S2. Summary of proteins datasets used in the current study. Table S3. Genetic instruments for plasma proteins. Table S4. Results of 13 proteome-wide Mendelian randomization identified proteins for colorectal cancer risk. Table S5. All results of discovery proteome-wide Mendelian randomization for colorectal cancer risk. Table S6. Mendelian randomization results of 13 proteins with colon cancer risk. Table S7. Mendelian randomization results of 13 proteins with rectal cancer risk. Table S8. All results of proteome-wide Mendelian randomization for colorectal cancer risk using only cis pQTLs. Table S9: Colocalization results across different priors and windows. Table S10: Druggability of proteins potentially causally associated with colorectal cancer.