cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ftmpbb5gx2.1
title: Single Nucleotide Polymorphisms (SNPs) of Beauveria species

description: Fungi are rich in complexes of sibling species that need combinations of approaches to be delimited, including with genomic information. Beauveria (Cordycipitaceae, Hypocreales) is a well-known genus of entomopathogenic fungi, used as a biocontrol agent. We present in this study a polyphasic taxonomy regarding two widely distributed complexes of Beauveria: B. asiatica and B. bassiana sensu lato. Some of the genetic groups as previously detected within both taxa were either confirmed or fused using population genomics. High levels of divergence were found between two clades in B. asiatica and between three clades in B. bassiana, supporting their subdivision as distinct species. 

Fungal culture and DNA extraction.
Seventy-eight strains of presumably 12 Beauveria species from BIOTEC culture collection (BCC) and ARS collection of entomopathogenic fungal cultures (ARSEF), including the type strains of known species and strains previously identified as B. bassiana or B. asiatica as well as some unidentified strains. The strains were cultured in 50 ml of potato dextrose broth and incubated at 25 °C for a week. Fungal mycelia were harvested by filtering with a sterilized nylon mesh and washed with ethylene diamine tetraacetic acid (EDTA) and distilled water. DNA extraction was done using a cetrimonium bromide (CTAB)-based method;  the DNAs were purified using the high pure PCR template preparation kit (Roche).

 

DNA library construction and sequencing
For whole genome shotgun sequencing of 78 strains, approximately 300 ng of each DNA sample was used for a library construction following the protocol in the MGIEazy FS library prep kit (MGI Tech, Shenzhen, China). The samples were pooled and sequenced in a single lane. Paired-end (150 bp) sequencing was performed on the MGISEQ-2000RS (MGI Tech, Shenzhen, China) according to the manufacturer’s instructions.

 

Data processing and detection of single nucleotide polymorphisms (SNPs)
            Using the MegaBOLT V1.5.6.11 software package, raw reads were de-multiplexed according to their barcodes and the adapter/barcode sequences were removed. After removing the low-quality regions, clean reads were mapped to the B. bassiana reference genome ARSEF8028 (Valero-Jiménez et al. 2016) using the MegaBOLT V1.5.6.11 alignment software (Minimap2 version 2.11-r797-v03) and the variants were called using GATK HaplotypeCaller version 3.8. SNP markers with poor quality data were filtered out using the following criteria: (a) a minor allele frequency <0.1; (b) depth coverage less than 10x; (c) more than 20% missing data. The ploidy was set as haploid as all the strains were collected from asexual mycelia, i.e. putatively haploid for this ascomycete fungus.
DOI: 10.5281/zenodo.5822690
title: Proteomic source data archive

description: Source data from proteomic analysis performed in manuscript "<strong>Mitochondrially targeted tamoxifen alleviates markers of obesity and type 2 diabetes mellitus" </strong>by<strong> </strong>Vacurova et al.
DOI: 10.5281/zenodo.5822689
title: Proteomic source data archive

description: Source data from proteomic analysis performed in manuscript "<strong>Mitochondrially targeted tamoxifen alleviates markers of obesity and type 2 diabetes mellitus" </strong>by<strong> </strong>Vacurova et al.
DOI: 10.6084/m9.figshare.18092921
title: Revistas científicas internacionais que adotam selos em conformidade com a ciência aberta

description: Revistas científicas e editoras internacionais que adotam selos de ciência aberta. Pesquisa realizada no site Open Science Badges.<br>
DOI: 10.6084/m9.figshare.18092921.v1
title: Revistas científicas internacionais que adotam selos em conformidade com a ciência aberta

description: Revistas científicas e editoras internacionais que adotam selos de ciência aberta. Pesquisa realizada no site Open Science Badges.<br>
DOI: 10.6084/m9.figshare.18092942
title: Revistas científicas internacionais que adotam selos em conformidade com a ciência aberta

description: Revistas científicas e editoras internacionais que adotam selos de ciência aberta. Pesquisa realizada no site Open Science Badges.
DOI: 10.5281/zenodo.5831214
title: Chlorophytum comosum decontaminated gx

description: .
DOI: 10.5281/zenodo.5831213
title: Chlorophytum comosum decontaminated gx

description: .
DOI: 10.6084/m9.figshare.18092948
title: The materials for the paper "Power and Personality trait"

description: The materials, appendix, data, and preregistration of the articles "How power and personality trait of others affect impression: Evidence from event-related potentials"
DOI: 10.5517/ccdc.csd.cc28v50b
title: CCDC 2110511: Experimental Crystal Structure Determination

description: Related Article: Kundo Kim, Yunmi Lee|2021|J.Org.Chem.|87|569|doi:10.1021/acs.joc.1c02576
DOI: 10.5517/ccdc.csd.cc28vtkj
title: CCDC 2111148: Experimental Crystal Structure Determination

description: Related Article: Day-Shin Hsu, Meng-Yu Wang, Jiun-Yi Huang|2021|J.Org.Chem.|87|644|doi:10.1021/acs.joc.1c02627
DOI: 10.5517/ccdc.csd.cc28zbxj
title: CCDC 2114538: Experimental Crystal Structure Determination

description: Related Article: Seoung-Mi Choi, Kyeong Do Kim, Jong-Un Park, Zi Xuan, Ju Hyun Kim|2022|RSC Advances|12|785|doi:10.1039/D1RA08579D
DOI: 10.5281/zenodo.5831233
title: Pyracantha coccinea decontaminated gx

description: .
DOI: 10.5281/zenodo.5831232
title: Pyracantha coccinea decontaminated gx

description: .
DOI: 10.5519/qd.f352gqws
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5268 records)
DOI: 10.34740/kaggle/dsv/3021160
title: Omicron daily cases by country (COVID-19 variant)
DOI: 10.3886/e120796v2
title: Confidence Accessing HIV Services

description: This data examined confidence accessing HIV and HIV prevention services among Black and Latinx men/women in Indiana.
DOI: 10.5281/zenodo.5831267
title: Detect, Fix, and Verify TensorFlow API Misuses - SANER 2022 - Experimental Data

description: Detect, Fix, and Verify TensorFlow API Misuses - SANER 2022 Experimental data
DOI: 10.6084/m9.figshare.18070493
title: Complex-amplitude Fourier single-pixel imaging via coherent structured illumination-DataSet

description: Measured Fourier Spectrum Data for Figs. 2, 3, 4, 5
DOI: 10.6084/m9.figshare.18070493.v1
title: Complex-amplitude Fourier single-pixel imaging via coherent structured illumination-DataSet

description: Measured Fourier Spectrum Data for Figs. 2, 3, 4, 5
DOI: 10.6084/m9.figshare.18093075.v1
title: Additional file 2 of oCEM: Automatic detection and analysis of overlapping co-expressed gene modules

description: Additional file 2. Supporting results.
DOI: 10.6084/m9.figshare.18093075
title: Additional file 2 of oCEM: Automatic detection and analysis of overlapping co-expressed gene modules

description: Additional file 2. Supporting results.
DOI: 10.6084/m9.figshare.18093084
title: Additional file 10 of The Alzheimer susceptibility gene BIN1 induces isoform-dependent neurotoxicity through early endosome defects

description: Additional file 10. Table S2. Gene ontology enrichment analysis for the 41 DEGs observed in glutamatergic neurons.
DOI: 10.6084/m9.figshare.18093084.v1
title: Additional file 10 of The Alzheimer susceptibility gene BIN1 induces isoform-dependent neurotoxicity through early endosome defects

description: Additional file 10. Table S2. Gene ontology enrichment analysis for the 41 DEGs observed in glutamatergic neurons.
DOI: 10.6084/m9.figshare.18093120
title: Additional file 9 of The Alzheimer susceptibility gene BIN1 induces isoform-dependent neurotoxicity through early endosome defects

description: Additional file 9. Table S1. Differential gene expression analysis for all different cell types identified in BIN1 WT and KO cerebral organoids.
DOI: 10.6084/m9.figshare.18093120.v1
title: Additional file 9 of The Alzheimer susceptibility gene BIN1 induces isoform-dependent neurotoxicity through early endosome defects

description: Additional file 9. Table S1. Differential gene expression analysis for all different cell types identified in BIN1 WT and KO cerebral organoids.
DOI: 10.6084/m9.figshare.18093180
title: Additional file 3 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 3: Table S1. Contig metrics.
DOI: 10.6084/m9.figshare.18093183
title: Additional file 4 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 4: Figure S3. Complete alignment in fasta for LFY homologs.
DOI: 10.6084/m9.figshare.18093186
title: Additional file 5 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 5: Table S2. LFY sequences complete data set.
DOI: 10.6084/m9.figshare.18093180.v1
title: Additional file 3 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 3: Table S1. Contig metrics.
DOI: 10.6084/m9.figshare.18093183.v1
title: Additional file 4 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 4: Figure S3. Complete alignment in fasta for LFY homologs.
DOI: 10.6084/m9.figshare.18093189
title: Additional file 6 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 6: Table S3. Primer sequences for fern and lycophyte LFY genes used here for RT-PCR and ISH.
DOI: 10.6084/m9.figshare.18093186.v1
title: Additional file 5 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 5: Table S2. LFY sequences complete data set.
DOI: 10.6084/m9.figshare.18093189.v1
title: Additional file 6 of Evolution and expression of LEAFY genes in ferns and lycophytes

description: Additional file 6: Table S3. Primer sequences for fern and lycophyte LFY genes used here for RT-PCR and ISH.
DOI: 10.6084/m9.figshare.16863949
title: data of Design and Implementation of Modular 6-DOF Light-weight Cooperative Handling Robot-revised

description: <b>Simulation and </b><b> </b><b>Experimental results of Modular 6-DOF Light-weight Cooperative Handling Robot</b>
DOI: 10.6084/m9.figshare.16863949.v5
title: data of Design and Implementation of Modular 6-DOF Light-weight Cooperative Handling Robot-revised

description: <b>Simulation and </b><b> </b><b>Experimental results of Modular 6-DOF Light-weight Cooperative Handling Robot</b>
DOI: 10.6084/m9.figshare.16863949.v4
title: data of Design and Implementation of Modular 6-DOF Light-weight Cooperative Handling Robot-revised

description: <b>Simulation and </b><b> </b><b>Experimental results of Modular 6-DOF Light-weight Cooperative Handling Robot</b>
DOI: 10.5066/p95komtc
title: Accelerometer scour monitor data on the Sauk River, Washington, Water Year 2018

description: Accelerometer scour monitors were deployed on the Sauk River, Washington during Water Year 2018 as part of a study on the timing of streambed scour in salmon-spawning habitat. This data release contains data of the three-dimensional orientation recorded at 15-minute intervals for the accelerometer monitors. Each accelerometer scour monitor was comprised of one to two individual accelerometers that were deployed in a vertical profile within the streambed. Thirty-one accelerometer scour monitors were deployed, but 7 accelerometer accelerometer scour monitors were recovered. This data release contains the geospatial information about the 31 accelerometer scour monitors that were deployed and three-dimensional orientation for the 7 accelerometer scour monitors that were recovered.
DOI: 10.5066/p9vjogm1
title: Digital elevation model of the Nehalem Bay near Wheeler, Oregon 2019

description: Bathymetric data were collected by the U.S. Geological Survey (USGS) in 2019 for approximately 2.2 square kilometers of the Nehalem Bay between the Highway 101 bridge and Nehalem Bay State Park (about 6.5 kilometers) near Wheeler, Oregon. The data were collected using a Trimble R8 Global Navigation Satellite System (GNSS) receiver combined with a Seafloor Systems Hydrolite TM single-beam 200 kilohertz echosounder mounted to a motorized boat. GPS positions received corrections in real time from the Oregon Real-Time GNSS Network. Sound velocity profiles were recorded at 19 different locations evenly spaced throughout the survey area using an AML Oceanographic Base X2 100 meter sound velocity profiler in order to quantify the spatial and temporal variation in sound velocity. Data was collected using the UTM Zone 10 North (meters) (NAD83[2011]) coordinate system, with elevations relative to NAVD88 using Geoid 12B. Data was post-processed to remove spurious data points. Raw depths were corrected using the mean value of the recorded sound velocity profiles, then converted to bed elevations. The mean vertical and horizontal uncertainties are 0.04145 and 0.00945 meters, respectively. This product is a GeoTiff raster digital elevation model (DEM) based on the bed elevation data. Bed elevations were used to create a triangulated irregular network (TIN) surface which was edited by adding lines delineating breaks in slope, then converted into a raster with a 20-meter cell size.
DOI: 10.5517/ccdc.csd.cc27vvts
title: CCDC 2081396: Experimental Crystal Structure Determination

description: Related Article: Ekaterina A. Arkhipova, Anton S. Ivanov, Mikhail M. Levin, Konstantin I. Maslakov, Stepan Yu. Kupreenko, Konstantin A. Lyssenko, Serguei V. Savilov|2021|J.Mol.Liq.|346|117095|doi:10.1016/j.molliq.2021.117095
DOI: 10.5517/ccdc.csd.cc28dsdw
title: CCDC 2097658: Experimental Crystal Structure Determination

description: Related Article: Alessio Orbelli Biroli, Francesca Tessore, Gabriele Di Carlo, Stefania Righetto, Maddalena Pizzotti, Alessandra Forni, Piercarlo Fantucci|2021|Inorg.Chim.Acta|533|120745|doi:10.1016/j.ica.2021.120745
DOI: 10.21227/ye5t-9r95
title: Usability Evaluation of Game-based EUD Application for Children in Smart Home 

description: This dataset contains usability evaluation raw data of the "Child-Home Interaction: Design and Usability Evaluation of Game-based End-user Development for Children" paper.This dataset includes four different type of End-user deveopment user interface for children in Smart Home. The first two columns indicate the type of UI which is one of these four types: The remaining columns indicate the usability metrics of the indicated UI including:  Task completion time, Task completion rate,UMUX,Engagement,Enjoyment for 32 participants of age 8-12.
DOI: 10.6084/m9.figshare.18093221
title: Data_Khelifa R & Mahdjoub H (2022). Ecology Letters

description: Khelifa R & Mahdjoub H (2022). An intersectionality lens is needed to establish a global view of equity, diversity and inclusion. Ecology Letters.
DOI: 10.6084/m9.figshare.18093221.v1
title: Data_Khelifa R & Mahdjoub H (2022). Ecology Letters

description: Khelifa R & Mahdjoub H (2022). An intersectionality lens is needed to establish a global view of equity, diversity and inclusion. Ecology Letters.
DOI: 10.34740/kaggle/dsv/3021553
title: Aviation Accident Database & Synopses
DOI: 10.6084/m9.figshare.13280252
title: Global offshore wind turbine dataset

description: This dataset including two contents. One part is the global offshore wind turbine dataset constructed by us, which provide geocoded information on global offshore wind turbines (OWTs) derived from Sentinel-1 synthetic aperture radar (SAR) time-series images from 2015 to 2019. It identified 6,924 wind turbines comprising of more than 10 nations. Data is available at 10 m spatial resolution, providing an explicit dataset for planning, monitoring, and managing marine space. The global OWTs are stored in Shapefile (.shp) format. The attributes and metadata are organized with referenced to the WGS84 datum, and each record consists of seven attributes: centroid latitude (centr_lat), centroid longitude (centr_lon), continent, country, sea area (sea_area), appearance year (occ_year) and month (occ_month).Another part is the validation set we generated that consisted of 50 random offshore wind farms, covering 2,663 wind turbines using three methods. Reference data include (1) the high-resolution aerial imagery and Google images, (2) the comparison and corroboration across multiple source datasets, and (3) a comprehensive visual examination and an extensive internal review by the authors using Sentinel 2-MSI data or Landsat 8-OLI imagery under true colour composition and Sentinel 1 data after floating or temporarily mobile object removal. The validation set is stored in the Shapefile (.shp) format for each wind farm. The attributes and metadata are organized with referenced to the WGS84 datum, and each record consists of three attributes: centroid latitude (centr_lat), centroid longitude (centr_lon) and country. Besides, one of the reference data, Sentinel 1 data after floating or temporarily mobile object removal, were attached.
DOI: 10.6084/m9.figshare.13280252.v9
title: Global offshore wind turbine dataset

description: This dataset including two contents. One part is the global offshore wind turbine dataset constructed by us, which provide geocoded information on global offshore wind turbines (OWTs) derived from Sentinel-1 synthetic aperture radar (SAR) time-series images from 2015 to 2019. It identified 6,924 wind turbines comprising of more than 10 nations. Data is available at 10 m spatial resolution, providing an explicit dataset for planning, monitoring, and managing marine space. The global OWTs are stored in Shapefile (.shp) format. The attributes and metadata are organized with referenced to the WGS84 datum, and each record consists of seven attributes: centroid latitude (centr_lat), centroid longitude (centr_lon), continent, country, sea area (sea_area), appearance year (occ_year) and month (occ_month).Another part is the validation set we generated that consisted of 50 random offshore wind farms, covering 2,663 wind turbines using three methods. Reference data include (1) the high-resolution aerial imagery and Google images, (2) the comparison and corroboration across multiple source datasets, and (3) a comprehensive visual examination and an extensive internal review by the authors using Sentinel 2-MSI data or Landsat 8-OLI imagery under true colour composition and Sentinel 1 data after floating or temporarily mobile object removal. The validation set is stored in the Shapefile (.shp) format for each wind farm. The attributes and metadata are organized with referenced to the WGS84 datum, and each record consists of three attributes: centroid latitude (centr_lat), centroid longitude (centr_lon) and country. Besides, one of the reference data, Sentinel 1 data after floating or temporarily mobile object removal, were attached.
DOI: 10.5281/zenodo.5831204
title: Quantification of salt stress in wheat leaves by Raman spectroscopy and machine learning

description: Train and test datasets used in the manusicript "Quantification of salt stress in wheat leaves by Raman spectroscopy and machine learning". Trained models are included.
DOI: 10.3886/e158921v1
title: Political centralization, career incentives, and local economic growth in Edo Japan

description: We argue that heterogeneity in political centralization explains local governance. Specifically, the career incentives and promotion prospects of local officials influence how they spend local resources which in turn impacts local economic growth. We utilize the unique historical case of Edo Japan to explore the effect of institutionalized political relations between central and local governments. We argue that fudai daimyos, or political insiders, who had access to important positions in the central administration expended their local resources to benefit their own careers at a cost to local development. We analyze both macro (domain) and micro (village) level data, and use an instrumental variable approach to causally identify the economic consequences of career incentives and promotion prospects. We find that growth in agricultural output was around 10-16 percentage points lower for fudai domains/villages in the Edo Period, which is a magnitude comparable to the difference in growth rates between China and France in the same period.
DOI: 10.3886/e158921
title: Political centralization, career incentives, and local economic growth in Edo Japan

description: We argue that heterogeneity in political centralization explains local governance. Specifically, the career incentives and promotion prospects of local officials influence how they spend local resources which in turn impacts local economic growth. We utilize the unique historical case of Edo Japan to explore the effect of institutionalized political relations between central and local governments. We argue that fudai daimyos, or political insiders, who had access to important positions in the central administration expended their local resources to benefit their own careers at a cost to local development. We analyze both macro (domain) and micro (village) level data, and use an instrumental variable approach to causally identify the economic consequences of career incentives and promotion prospects. We find that growth in agricultural output was around 10-16 percentage points lower for fudai domains/villages in the Edo Period, which is a magnitude comparable to the difference in growth rates between China and France in the same period.
DOI: 10.3886/e158921v2
title: Political centralization, career incentives, and local economic growth in Edo Japan

description: We argue that heterogeneity in political centralization explains local governance. Specifically, the career incentives and promotion prospects of local officials influence how they spend local resources which in turn impacts local economic growth. We utilize the unique historical case of Edo Japan to explore the effect of institutionalized political relations between central and local governments. We argue that fudai daimyos, or political insiders, who had access to important positions in the central administration expended their local resources to benefit their own careers at a cost to local development. We analyze both macro (domain) and micro (village) level data, and use an instrumental variable approach to causally identify the economic consequences of career incentives and promotion prospects. We find that growth in agricultural output was around 10-16 percentage points lower for fudai domains/villages in the Edo Period, which is a magnitude comparable to the difference in growth rates between China and France in the same period.
DOI: 10.18112/openneuro.ds003981.v1.0.0
title: Structural, diffusion and rs-functional MRI data in Macaque Monkeys
DOI: 10.6084/m9.figshare.16814359
title: Metabolomic Analysis of Carbohydrate and Amino Acid Changes Induced by Hypoxia in Naked Mole-Rat Brain and Liver

description: These are raw metabolomics file (.mzXML) for 4 hrs hypoxia vs. normoxia treated naked mole-rat and mice. Liver (Li) and brain (br) were examined. n=4 per treatment group. Metabolite identification library is included.
DOI: 10.34740/kaggle/dsv/3021760
title: Aviation Accident Database & Synopses
DOI: 10.34740/kaggle/dsv/3021785
title: Aviation Accident Database & Synopses
DOI: 10.34740/kaggle/dsv/3021787
title: Aviation Accident Database & Synopses
DOI: 10.6084/m9.figshare.16746622
title: CL20-TNT_reference-dataset

description: The reference dataset used in work "Ab Initio Neural Network MD Simulation of Thermal Decomposition of High Energy Material Cl-20/TNT".
DOI: 10.5517/ccdc.csd.cc28thqb
title: CCDC 2109882: Experimental Crystal Structure Determination

description: Related Article: Clarence Tan, Hendrik Tinnermann, Simon Sung, Li Heng Kat, Rowan D. Young|2021|Organometallics|40|4098|doi:10.1021/acs.organomet.1c00538
DOI: 10.5517/ccdc.csd.cc28thvg
title: CCDC 2109886: Experimental Crystal Structure Determination

description: Related Article: Clarence Tan, Hendrik Tinnermann, Simon Sung, Li Heng Kat, Rowan D. Young|2021|Organometallics|40|4098|doi:10.1021/acs.organomet.1c00538