cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5616136.v1
title: Diversity, systematics, and evolution of Cynodonteae inflorescences (Chloridoideae – Poaceae)

description: The species of the Cynodonteae tribe show great morphological diversity in their reproductive structures. Previous studies where inflorescences were comparatively analysed in the context of phylogeny have shown that although grass inflorescences seem to be excessively variable, there are certain aspects of inflorescences that store relevant information on the evolution and systematics in Poaceae. We have analysed and compared the inflorescence structures of species belonging to the Hilariinae, Monanthochloinae, Scleropogoninae, and Muhlenbergiinae subtribes. Considering the most relevant morphological characters, the most recurrent types of inflorescences in the lineage were determined by means of a principal coordinates analysis. To understand the evolution of inflorescence morphology, ancestral reconstructions of inflorescence characters were performed using the Bayesian inference method. The results obtained demonstrate that the processes of homogenization and truncation might account for the diversity observed in adult inflorescences. Five different types of inflorescences were identified out of 36 theoretical possibilities. Amongst these, inflorescence type 1 (panicle of spikelets, with a terminal spikelet, non-homogenized, and bearing third- or higher-order branches) was found to be the most frequent in the studied group. Ancestral reconstructions of morphological characters allowed us to suggest that the ancestor of the group might have had an inflorescence with the form of a raceme of spikelets, non-truncated and bearing first-order branches. More complex inflorescences bearing no terminal spikelets and having branches of higher order might have diverged this lineage.
DOI: 10.6084/m9.figshare.5615746
title: data_PlosOne_Meleder_2017.txt

description: These data are those used in the paper PlosOne Meleder et al. 2017 " Microphytobenthos primary production estimated by hyperspectral reflectance"
DOI: 10.6084/m9.figshare.5615746.v1
title: data_PlosOne_Meleder_2017.txt

description: These data are those used in the paper PlosOne Meleder et al. 2017 " Microphytobenthos primary production estimated by hyperspectral reflectance"
DOI: 10.6084/m9.figshare.5615743
title: An Alternative Integral Representation of the Dirac Delta

description: A critical review of the integral representation of the Dirac delta distribution regarding the strong requirements imposed on test functions and their possible disadvantages for physical theories, accompanied by a new approach to the beast and a newly proposed integral representation that fulfills the sifting property for any continuous function or field.
DOI: 10.6084/m9.figshare.5616109.v1
title: EEG Data

description: EEG data recorded during multiterrain locomotion.
DOI: 10.6084/m9.figshare.5616109.v2
title: Full body mobile brain-body imaging data (EEG, EMG, and kinematics) during unconstrained locomotion on stairs, ramps, and level ground

description: This dataset contains full brain/body imaging data from ten able-bodied subjects during locomotion on an experimental course containing stairs, ramps, and level ground. We recorded 60-channel EEG from the scalp and 4-channel EOG from the face and temples. Surface EMG was recorded from six muscle cites bilaterally on the thigh and shank. The motion capture system consisted of seventeen wireless IMUs, allowing for unconstrained ambulation in the experimental space. This research was partly supported by NSF award IIS-1302339 and an NIH F99 Predoctoral Fellowship (NS105210) to Justin Brantley.
DOI: 10.6084/m9.figshare.5615731
title: Data for "Integrating community assembly and biodiversity reveals new dimensions of ecosystem function: the Community Assembly and the Functioning of Ecosystems (CAFE) approach"

description: Data supporting the Ecology Letters publication entitled "Integrating community assembly and biodiversity to better understand ecosystem function: the Community Assembly and the Functioning of Ecosystems (CAFE) approach". <b></b><br>3 files are provided for the three case studies included in the paper. 1. Flory and Clay 20102. Casas et al. 20043. Thibault and Brown 2008<br>[R] code is available at https://github.com/ctkremer/priceTools.
DOI: 10.6084/m9.figshare.5616109.v3
title: Full body mobile brain-body imaging data (EEG, EMG, and kinematics) during unconstrained locomotion on stairs, ramps, and level ground

description: This dataset contains full brain/body imaging data from ten able-bodied subjects during locomotion on an experimental course containing stairs, ramps, and level ground. We recorded 60-channel EEG from the scalp and 4-channel EOG from the face and temples. Surface EMG was recorded from six muscle cites bilaterally on the thigh and shank. The motion capture system consisted of seventeen wireless IMUs, allowing for unconstrained ambulation in the experimental space. This research was partly supported by NSF award IIS-1302339 and an NIH F99 Predoctoral Fellowship (NS105210) to Justin Brantley.
DOI: 10.6084/m9.figshare.5615671
title: DOI Links on Japanese, English, and Chinese Wikipedias as of March, 2015 (from all namespaces)

description: See also:Jiro Kikkawa, Masao Takaku, Fuyuki Yoshikane:DOI Links on Wikipedia - Analyses of English, Japanese, and Chinese Wikipedias. ICADL 2016: 369-380 https://doi.org/10.1007/978-3-319-49304-6_40 , http://hdl.handle.net/2241/00144576
DOI: 10.6084/m9.figshare.5615665
title: Ceca communities inoculated with differential succession dataset

description: This dataset corresponds to the experiment with different order of inoculation of 2 whole ceca communities in germ-free mice
DOI: 10.6084/m9.figshare.5615668
title: 4-strain cocktail inoculated at different time points dataset

description: This dataset corresponds to the experiments in which a 4-strain cocktail mix of specific murine bacteria were introduced in mice at different time points relative to the inoculation of a donor whole ceca community
DOI: 10.6084/m9.figshare.5615671.v1
title: DOI Links on Japanese, English, and Chinese Wikipedias as of March, 2015 (from all namespaces)

description: See also:Jiro Kikkawa, Masao Takaku, Fuyuki Yoshikane:DOI Links on Wikipedia - Analyses of English, Japanese, and Chinese Wikipedias. ICADL 2016: 369-380 https://doi.org/10.1007/978-3-319-49304-6_40 , http://hdl.handle.net/2241/00144576
DOI: 10.6084/m9.figshare.5615665.v1
title: Ceca communities inoculated with differential succession dataset

description: This dataset corresponds to the experiment with different order of inoculation of 2 whole ceca communities in germ-free mice
DOI: 10.6084/m9.figshare.5615668.v1
title: 4-strain cocktail inoculated at different time points dataset

description: This dataset corresponds to the experiments in which a 4-strain cocktail mix of specific murine bacteria were introduced in mice at different time points relative to the inoculation of a donor whole ceca community
DOI: 10.6084/m9.figshare.5615563
title: How AI writes financial reports and trades stocks Trust & Respect

description: <i>As monetization strategies shift from neatly defined, one-time purchases to subtler long-term relationships that are built on a combination of ongoing product and service-based cash flow, financial professionals need to define a distinct and automatable process for generating innovative, accurate, clear and thorough financial reports combining elements of trust and respect intact.</i>
DOI: 10.6084/m9.figshare.5615530
title: CBC Reference Intervals and Hematologic Methods Comparison in 7wk old Bobwhite Quail.xlsx

description: The Northern bobwhite quail (<i>Colinus virginianus</i>) is commonly captive-bred to be released to bolster wild populations and allow for hunting. This is hematologic data collected from 49-day-old bobwhite quail prior to release that also compares three methods of obtaining a white blood cell count.<br>
DOI: 10.6084/m9.figshare.5615506
title: Contextual modulation of value signals in reward and punishment learning

description: Please find attached three script that can be used to fit three models and the data from the paper:<br>1) A Basic Q-learning (not presented in the Paper)2) the Q-learning + counterfactual learning (the ABSOLUTE model in the paper)3) the RELATIVE model. <br>The Computational_Model_* file is the one actually containing the models' algorithms. The other codes serve to fit the models to the data with both classical (LL) and "bayesian" (LPP) techniques. I commented almost all the lines to make the code as much as accessible as I can. However if anything is not clear please do not hesitate to contact me, I will be very happy to help. The code there is written for session 1, but it can be easily adapted for other sessions. I also join the date from the NAture communication study (28 subjects, 4 session each).
DOI: 10.6084/m9.figshare.5615413
title: Data from users registered for the 9th Spanish R Users conference

description: Data extracted from the user, event and group profile for delegates in the 9th R users conference in Spain<br>
DOI: 10.6084/m9.figshare.5615407
title: readme.pdf

description: Readme file<br>
DOI: 10.6084/m9.figshare.5615410
title: readme.pdf

description: Readme file.<br>
DOI: 10.6084/m9.figshare.5615398.v1
title: Hyperedge(LabviewSource).zip

description: Labview source code for the hyperedge bundling graphic user interface.<br>
DOI: 10.6084/m9.figshare.5615407.v2
title: readme.pdf

description: Readme file<br>
DOI: 10.6084/m9.figshare.5615449.v3
title: Corneal endothelial cells proliferation uncoated, collagen and Matrigel-coated plates

description: Six corneal endothelia were obtained by surgical dissection from 3-month-old White New Zealand rabbit eyes, a section of 5 mm2 of each tissue was cultured directly in proliferative medium (OptiMEM I 8% FBS, 5 ng/mL EGF, 20 ng/mL NGF, 20 μ g/mL ascorbic acid, 0.08% chondroitin sulfate, 200 μ g/mL CaCl2, and antibiotics) until confluence (~15 days). The explant was removed after 7 days, when CEC growth was seen. Each confluent CEC plate were splitted in three plates and cultured in basal medium (OptiMEM I 8% FBS and antibiotics) until confluence. Morphological changes in each culture condition (Matrigel, Collagen I, and no coating in proliferative or basal medium) were registered with an Axiovert 40 CFL inverted microscope (Zeiss, Germany) with a Power Shot A640 digital camera (Canon, USA). Immunocytochemistry was performed to analyze the presence of GPC4 and Na/K-ATPase in CEC cultured in each condition. Images were obtained with a fluorescence inverted microscope ImagerZ.1 (Zeiss, Germany), equipped with a AxioCam HRm (Zeiss, Germany) and software Axiovision 4.6 (Axio Vs 40V4.6.1.0 Carl Zeiss Imaging Solutions GmH, Germany).<br>RNA was isolated from CEC cultured in basal medium to analyze the expression of GPC4, CD200, and TJP1 by RT-PCR. GAPDH gene was used a s constitutive control.A Step One Real-time PCR System (Applied Biosystems by Life Technologies, Singapore) was used for final point PCRs of specific CECs markers GPC4 (Fw CGCCAAATCATGGCTCTTCG, Rv GGCACTGCTGGTACTCACAT), TJP1 (Fw TGCCTCCGAGAGAGATGACA, Rv CGCCAGCCACAAATATTCCG) and CD200 (Fw TTCGGGAGGCCCTTCTATCA, Rv CATCCTGGGTCACCACTTCC); housekeeping gene used was GAPDH (Fw CGAGCTGAACGGGAAACTCA, Rv CCCAGCATCGAAGGTAGAGG). Four cycles of preamplification (1:30 min 95°C, 30 s 64°C, 45 s 72°C) were followed by 30 amplification cycles (30 s 95°C, 30s; 57°C, 45 s 72°C) and a 5-min extension at 7°C. Electrophoresis of PCR products was performed in a 2% agarose gel, 140V in sodium borate buffer. <br>
DOI: 10.6084/m9.figshare.5615407.v1
title: readme.pdf

description: Readme file<br>
DOI: 10.6084/m9.figshare.5615449.v4
title: Corneal endothelial cells proliferation uncoated, collagen and Matrigel-coated plates

description: Six corneal endothelia were obtained by surgical dissection from 3-month-old White New Zealand rabbit eyes, a section of 5 mm2 of each tissue was cultured directly in proliferative medium (OptiMEM I 8% FBS, 5 ng/mL EGF, 20 ng/mL NGF, 20 μ g/mL ascorbic acid, 0.08% chondroitin sulfate, 200 μ g/mL CaCl2, and antibiotics) until confluence (~15 days). The explant was removed after 7 days, when CEC growth was seen. Each confluent CEC plate were splitted in three plates and cultured in basal medium (OptiMEM I 8% FBS and antibiotics) until confluence. Morphological changes in each culture condition (Matrigel, Collagen I, and no coating in proliferative or basal medium) were registered with an Axiovert 40 CFL inverted microscope (Zeiss, Germany) with a Power Shot A640 digital camera (Canon, USA). Immunocytochemistry was performed to analyze the presence of GPC4 and Na/K-ATPase in CEC cultured in each condition. Images were obtained with a fluorescence inverted microscope ImagerZ.1 (Zeiss, Germany), equipped with a AxioCam HRm (Zeiss, Germany) and software Axiovision 4.6 (Axio Vs 40V4.6.1.0 Carl Zeiss Imaging Solutions GmH, Germany).<br>RNA was isolated from CEC cultured in basal medium to analyze the expression of GPC4, CD200, and TJP1 by RT-PCR. GAPDH gene was used a s constitutive control.A Step One Real-time PCR System (Applied Biosystems by Life Technologies, Singapore) was used for final point PCRs of specific CECs markers GPC4 (Fw CGCCAAATCATGGCTCTTCG, Rv GGCACTGCTGGTACTCACAT), TJP1 (Fw TGCCTCCGAGAGAGATGACA, Rv CGCCAGCCACAAATATTCCG) and CD200 (Fw TTCGGGAGGCCCTTCTATCA, Rv CATCCTGGGTCACCACTTCC); housekeeping gene used was GAPDH (Fw CGAGCTGAACGGGAAACTCA, Rv CCCAGCATCGAAGGTAGAGG). Four cycles of preamplification (1:30 min 95°C, 30 s 64°C, 45 s 72°C) were followed by 30 amplification cycles (30 s 95°C, 30s; 57°C, 45 s 72°C) and a 5-min extension at 7°C. Electrophoresis of PCR products was performed in a 2% agarose gel, 140V in sodium borate buffer. <br>
DOI: 10.6084/m9.figshare.5615449.v5
title: Corneal endothelial cells proliferation uncoated, collagen and Matrigel-coated plates

description: Six corneal endothelia were obtained by surgical dissection from 3-month-old White New Zealand rabbit eyes, a section of 5 mm2 of each tissue was cultured directly in proliferative medium (OptiMEM I 8% FBS, 5 ng/mL EGF, 20 ng/mL NGF, 20 μ g/mL ascorbic acid, 0.08% chondroitin sulfate, 200 μ g/mL CaCl2, and antibiotics) until confluence (~15 days). The explant was removed after 7 days, when CEC growth was seen. Each confluent CEC plate were splitted in three plates and cultured in basal medium (OptiMEM I 8% FBS and antibiotics) until confluence. Morphological changes in each culture condition (Matrigel, Collagen I, and no coating in proliferative or basal medium) were registered with an Axiovert 40 CFL inverted microscope (Zeiss, Germany) with a Power Shot A640 digital camera (Canon, USA). Immunocytochemistry was performed to analyze the presence of GPC4 and Na/K-ATPase in CEC cultured in each condition. Images were obtained with a fluorescence inverted microscope ImagerZ.1 (Zeiss, Germany), equipped with a AxioCam HRm (Zeiss, Germany) and software Axiovision 4.6 (Axio Vs 40V4.6.1.0 Carl Zeiss Imaging Solutions GmH, Germany).<br>RNA was isolated from CEC cultured in basal medium to analyze the expression of GPC4, CD200, and TJP1 by RT-PCR. GAPDH gene was used a s constitutive control.A Step One Real-time PCR System (Applied Biosystems by Life Technologies, Singapore) was used for final point PCRs of specific CECs markers GPC4 (Fw CGCCAAATCATGGCTCTTCG, Rv GGCACTGCTGGTACTCACAT), TJP1 (Fw TGCCTCCGAGAGAGATGACA, Rv CGCCAGCCACAAATATTCCG) and CD200 (Fw TTCGGGAGGCCCTTCTATCA, Rv CATCCTGGGTCACCACTTCC); housekeeping gene used was GAPDH (Fw CGAGCTGAACGGGAAACTCA, Rv CCCAGCATCGAAGGTAGAGG). Four cycles of preamplification (1:30 min 95°C, 30 s 64°C, 45 s 72°C) were followed by 30 amplification cycles (30 s 95°C, 30s; 57°C, 45 s 72°C) and a 5-min extension at 7°C. Electrophoresis of PCR products was performed in a 2% agarose gel, 140V in sodium borate buffer. <br>
DOI: 10.6084/m9.figshare.5615449
title: RT-PCR Corneal endothelial cells proliferation uncoated, collagen and Matrigel-coated plates

description: Six White New Zealand rabbits 3-month-old were sacrificed under general anesthesia and a lethal intracardiac injection of sodic pentobarbital. A corneoscleral rim excision was made and the conjunctiva was dissected. Lens and aqueous humor were removed and the corneas were obtained. Under sterile conditions, Descemet’s membrane were separated from corneal stroma and rinsed with basal stabilizer medium (SM) containing OptiMEM-I 8% fetal bovine serum (FBS) and 1% antibiotics. Corneal endothelia were peeled off from the Descemet’s membrane and a ~5 mm2 section was cultured in proliferative medium (PM) containing OptiMEM-I 8% FBS, 20 ng/mL of nerve growth factor (NGF), 5 ng/mL of epidermal growth factor (EGF), 200 µg/L of calcium chloride, 20 µg/mL of ascorbic acid, 0.08% chondroitin sulfate, and antibiotics over Matrigel, Collagen I or no coated plate until confluence (~90% of the plate showed adherent cells, ~15 days). The plates were tripzinised and cultured in SM. Morphological changes were photodocumented. RNA was isolated from CEC cultured in PM and SM. Final point RT-PCRs were made to analyze the expression of the specific CECs markers: glypican-4 (GPC4), tight junction protein 1 (TJP1), and CD200; housekeeping gene glyceraldehyde phosphate dehydrogenase (GAPDH) was used. Electrophoresis of PCR products was performed on a 2% agarose gel and the bands were photodocumented. Immunocytochemistry was performed to analyze the presence of GPC4 and Na/K-ATPase in CEC cultured in each condition. Images were obtained with a fluorescence inverted microscope.<br>
DOI: 10.6084/m9.figshare.5615449.v8
title: Corneal endothelial cells proliferation uncoated, collagen and Matrigel-coated plates

description: Six White New Zealand rabbits 3-month-old were sacrificed under general anesthesia and a lethal intracardiac injection of sodic pentobarbital. A corneoscleral rim excision was made and the conjunctiva was dissected. Lens and aqueous humor were removed and the corneas were obtained. Under sterile conditions, Descemet’s membrane were separated from corneal stroma and rinsed with basal stabilizer medium (SM) containing OptiMEM-I 8% fetal bovine serum (FBS) and 1% antibiotics. Corneal endothelia were peeled off from the Descemet’s membrane and a ~5 mm2 section was cultured in proliferative medium (PM) containing OptiMEM-I 8% FBS, 20 ng/mL of nerve growth factor (NGF), 5 ng/mL of epidermal growth factor (EGF), 200 µg/L of calcium chloride, 20 µg/mL of ascorbic acid, 0.08% chondroitin sulfate, and antibiotics over Matrigel, Collagen I or no coated plate until confluence (~90% of the plate showed adherent cells, ~15 days). The plates were tripzinised and cultured in SM. Morphological changes were photodocumented. RNA was isolated from CEC cultured in PM and SM. Final point RT-PCRs were made to analyze the expression of the specific CECs markers: glypican-4 (GPC4), tight junction protein 1 (TJP1), and CD200; housekeeping gene glyceraldehyde phosphate dehydrogenase (GAPDH) was used. Electrophoresis of PCR products was performed on a 2% agarose gel and the bands were photodocumented. Immunocytochemistry was performed to analyze the presence of GPC4 and Na/K-ATPase in CEC cultured in each condition. Images were obtained with a fluorescence inverted microscope.<br>
DOI: 10.4225/03/5a0fe782b1d7d
title: Module 3.2 3D Craton-scale model

description: 2D forward models and 3D Craton-scale models constructed of the West Africa Craton in 2017.
DOI: 10.6084/m9.figshare.9894542.v2
title: Test video capture 2nd Version

description: se this form to edit all information related to your data. Please be as descriptive as possible. The file upload is independent from the rest of the form, so you don't need to save an upload. This message will be replaced with helpful tips and suggestions as you begin interacting with the form.
DOI: 10.6084/m9.figshare.5615011
title: Potential for primary productivity in a globally-distributed bacterial phototroph

description: Genome data for the submitted manuscript 'Potential for primary productivity in a globally-distributed bacterial phototroph' - an updated version of the previous dataset.
DOI: 10.6084/m9.figshare.5615029
title: Dissolution of water into nitrobenzene

description: Animations of water dissolving into nitrobenzene. These dissolution events are taken from molecular dynamics trajectories.<br>
DOI: 10.6084/m9.figshare.5615011.v1
title: Potential for primary productivity in a globally-distributed bacterial phototroph

description: Genome data for the submitted manuscript 'Potential for primary productivity in a globally-distributed bacterial phototroph' - an updated version of the previous dataset.
DOI: 10.6084/m9.figshare.5615029.v1
title: Dissolution of water into nitrobenzene

description: Animations of water dissolving into nitrobenzene. These dissolution events are taken from molecular dynamics trajectories.<br>
DOI: 10.6084/m9.figshare.5615035
title: Systematic literature review and network meta-analysis of cladribine tablets versus alternative disease-modifying treatments for relapsing–remitting multiple sclerosis

description: <b>Objective:</b> To assess the comparative efficacy and safety of cladribine tablets versus alternative disease modifying treatments (DMTs) in patients with active relapsing–remitting multiple sclerosis (RRMS), and in a subgroup with high disease activity (HRA + DAT), using systematic literature review (SLR) and network meta-analysis (NMA). <b>Methods:</b> MEDLINE, Embase, MEDLINE In-Process and CENTRAL databases were systematically searched to identify English-language publications of relevant studies of approved DMTs for RRMS. Searches were conducted from database inception to January 2017. Conference websites and trial registries were also searched. NMA considered the effects of DMTs on annualized relapse rate (ARR), confirmed disease progression (CDP), no evidence of disease activity (NEDA) and safety. <b>Results:</b> Of 10,825 articles retrieved and screened, 44 studies assessing 12 DMTs contributed to the NMA. In patients with active RRMS, cladribine tablets were associated with a significant 58% reduction in ARR versus placebo (<i>p</i> p <b>Conclusion:</b> In this first NMA to consider cladribine tablets, ocrelizumab and daclizumab for treatment of RRMS, cladribine tablets are a comparatively effective and safe alternative to other DMTs in both active RRMS and HRA + DAT populations.
DOI: 10.6084/m9.figshare.5615035.v2
title: Systematic literature review and network meta-analysis of cladribine tablets versus alternative disease-modifying treatments for relapsing–remitting multiple sclerosis

description: <b>Objective:</b> To assess the comparative efficacy and safety of cladribine tablets versus alternative disease modifying treatments (DMTs) in patients with active relapsing–remitting multiple sclerosis (RRMS), and in a subgroup with high disease activity (HRA + DAT), using systematic literature review (SLR) and network meta-analysis (NMA). <b>Methods:</b> MEDLINE, Embase, MEDLINE In-Process and CENTRAL databases were systematically searched to identify English-language publications of relevant studies of approved DMTs for RRMS. Searches were conducted from database inception to January 2017. Conference websites and trial registries were also searched. NMA considered the effects of DMTs on annualized relapse rate (ARR), confirmed disease progression (CDP), no evidence of disease activity (NEDA) and safety. <b>Results:</b> Of 10,825 articles retrieved and screened, 44 studies assessing 12 DMTs contributed to the NMA. In patients with active RRMS, cladribine tablets were associated with a significant 58% reduction in ARR versus placebo (<i>p</i> p <b>Conclusion:</b> In this first NMA to consider cladribine tablets, ocrelizumab and daclizumab for treatment of RRMS, cladribine tablets are a comparatively effective and safe alternative to other DMTs in both active RRMS and HRA + DAT populations.