cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28217549.v1
title: Resequencing variants of golden pompano

description: Genome-wide resequencing variants of golden pompano (Trachinotus ovatus) for genetic Improvement on growth-related traits.
DOI: 10.17632/gn4vk5crzy
title: Materials for: Romantic relationship satisfaction

description: Materials for: 
Find someone with similar values but different personalities: A cross-level polynomial regression analysis on perceived similarities of values, personalities, and romantic relationship satisfaction
DOI: 10.6084/m9.figshare.17264225.v1
title: USGS-CDL key

description: Key relating crop groups from the USGS pesticide dataset to land cover classes in the USDA Cropland Data Layer (all states in the contiguous US, other than California)
DOI: 10.6084/m9.figshare.21679235.v1
title: Enhancing SRTM digital elevation models with deep-learning-based super-resolution image generation

description: Abstract: Digital elevation models are responsible for providing altimetric information on a surface to be mapped. While global models of low and medium spatial resolution are available open source by several space agencies, the high-resolution ones, which are utilized in scales 1:25,000 and larger, are scarce and expensive. Here we address this limitation by the utilization of deep learning algorithms coupled with SISR techniques in digital elevation models to obtain better spatial quality versions from lower resolution inputs. The development of a GAN-based methodology enables the improvement of the initial spatial resolution of low-resolution images. A dataset with different pairs of digital elevation models was created with the objective of allowing the study to be carried out, promoting the emergence of new research groups in the area as well as enabling the comparison between the results obtained. It has been found that by increasing the number of iterations the performance of the generated model was improved and the quality of the generated image increased. Furthermore, the visual analysis of the generated image against the high- and low-resolution ones showed a great similarity between the first two.
DOI: 10.6084/m9.figshare.14977185.v1
title: Data from: Combining Genomic, Phenotypic and Sanger Sequencing Data to Elucidate the Phylogeny of the Two-Clawed Spiders (Dionycha)

description: This folder contains the empirical and simulated data, as well as the scripts used for simulations presented in the paper Azevedo, G. H., Bougie, T., Carboni, M., Hedin, M., & Ramírez, M. J. (2022). Combining genomic, phenotypic and Sanger sequencing data to elucidate the phylogeny of the two-clawed spiders (Dionycha). <i>Molecular Phylogenetics and Evolution</i>, <i>166</i>, 107327. <br>
DOI: 10.6084/m9.figshare.27242094.v2
title: Data for Ecological Applications publication "Developing spatially explicit critical loads for herbaceous species across the U.S. using convex hulls"

description: Summary: This data shows the convex hulls for open canopy, closed canopy, and all 198 species analyzed in the journal article "Developing spatially explicit critical loads for herbaceous species across the U.S. using convex hulls" in Ecological Applications. Details of the methods are in the publication. Description: Once unzipped, this folder has a summary metadata file, and two subfolders : (1) "Richness Convex Hulls" (where the convex hulls for open and closed canopy communities are located) and (2) "Species Convex Hulls" (where the convex hulls for the 198 species are located. Inside each folder .tiff files, with bands for total distance to the convex hull (<i>Distance</i>), as well as individual distances for the 5 dimensions of pH (<i>pH</i>), precipitation (<i>Precipitation</i>), temperature (<i>Temperature</i>), nitrogen deposition (<i>Nitrogen</i>), and sulfur deposition (<i>Sulfur</i>). Note that for open and closed canopy convex hulls, sulfur was not included in the original analysis (Simkin et al. 2016) and thus are not included in the convex hulls. The units for all distances are in standard deviations (unitless, based on Mahalanobis distance). Credits: These files were created by Gray Martin at RTI International under EPA Contract 68HERD21A0004.Use limitations: There are no access and use limitations for this item.Extent: CONUS.Scale Range: There is no scale range for this item.<br>
DOI: 10.17632/63rszpyfns
title: normal and stroke

description: raw fnirs data for normal and stroke
DOI: 10.17632/sypyt6c2mc
title: Data for: A systematic review showed no performance benefit of machine learning over logistic regression for clinical prediction models

description: The uploaded files are: 1) Excel file containing 6 sheets in respective Order: "Data Extraction" (summarized final data extractions from the three reviewers involved), "Comparison Data" (data related to the comparisons investigated), "Paper level data" (summaries at paper level), "Outcome Event Data" (information with respect to number of events for every outcome investigated within a paper), "Tuning Classification" (data related to the manner of hyperparameter tuning of Machine Learning Algorithms). 2) R script used for the Analysis (In order to read the data, please: Save "Comparison Data", "Paper level data", "Outcome Event Data" Excel sheets as txt files. In the R script srpap: Refers to the "Paper level data" sheet, srevents: Refers to the "Outcome Event Data" sheet and srcompx: Refers to " Comparison data Sheet". 3) Supplementary Material: Including Search String, Tables of data, Figures 4) PRISMA checklist items
DOI: 10.17632/xkkn35fn9y
title: Data for: Dural tears in percutaneous biportal endoscopic spine surgery: Anatomical location and management

description: raw dat tifle
DOI: 10.17632/s3dw8c8srv
title: eHDECAY: An implementation of the Higgs effective Lagrangian into HDECAY

description: Abstract We present eHDECAY, a modified version of the program HDECAY which includes the full list of leading bosonic operators of the Higgs effective Lagrangian with a linear or non-linear realization of the electroweak symmetry and implements two benchmark composite Higgs models. Title of program: eHDECAY Catalogue Id: AEUJ_v1_0 Nature of problem Numerical calculation of the decay widths and branching ratios of a Higgs like boson within four different parametrisations: the non-linear Lagrangian, the Strongly-Interacting Light Higgs (SILH) Lagrangian and the MCHM4 and MCHM5 Lagrangians. The Fortran program eHDECAY includes the most important higher-order QCD effects and in case of the SILH and composite Higgs parametrisation also the electroweak (EW) higher order corrections. The user furthermore has the possibility to turn off these EW c ... Versions of this program held in the CPC repository in Mendeley Data AEUJ_v1_0; eHDECAY; 10.1016/j.cpc.2014.06.028 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/t98pjcd7t6
title: Single-cell lineage tracing of metastatic cancer reveals selection of hybrid EMT states

description: The underpinnings of cancer metastasis remain poorly understood, in part due to a lack of tools for probing their emergence at high resolution. Here we present macsGESTALT, an inducible CRISPR-Cas9-based lineage recorder with highly efficient single-cell capture of both transcriptional and phylogenetic information. Applying macsGESTALT to a mouse model of metastatic pancreatic cancer, we recover ~380,000 CRISPR target sites and reconstruct dissemination of ~28,000 single cells across multiple metastatic sites. We find cells occupy a continuum of epithelial-to-mesenchymal transition (EMT) states. Metastatic potential peaks in rare, late-hybrid EMT states, which are aggressively selected from a predominately epithelial ancestral pool. The gene signatures of these late-hybrid EMT states are predictive of reduced survival in both human pancreatic and lung cancer patients, highlighting their relevance to clinical disease progression. Finally, we observe evidence for in vivo propagation of S100 family gene expression across clonally distinct metastatic subpopulations.
DOI: 10.6084/m9.figshare.10063013.v1
title: Integrating pattern-based modelling and political ecology in land-use change research: the case of Mexican dry tropics

description: Agricultural and extractive frontiers experiment rapid landscape transformation. Land-Use Sciences and Political Ecology are complementary approaches for analysing how landscape transformations are related to biophysical conditions, and socioeconomic, cultural and political processes developed at global, national and local scales. This study examines such relationships in a long-standing agrarian and resource frontier in southern Mexico for the 1986–2015 period. We combine insights from: (1) a quantitative land use/land cover change pattern-based model, involving a weights of evidence and cellular automata simulations, and (2) a qualitative content analysis of literature and of local actors’ perspectives. Two grand frontier processes have developed in this region: NAFTA-related agrarian transition toward intensification and the establishment of wind farms. Both were triggered by global forces and new forms of land and resources use, but mediated by national-to-local ecological, socioeconomic and political processes, producing particular landscape transformations.
DOI: 10.6084/m9.figshare.20488230.v1
title: PDBBind 2019 refined dataset

description: ligand and mesh graphs for refined dataset
DOI: 10.6084/m9.figshare.22575358.v1
title: Human HSPC RNA Data

description: Human HSPC RNA data used in the Figure 5 notebook.
DOI: 10.6084/m9.figshare.c.3612158_d3.v1
title: Additional file 3 of Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data

description: Implementation of population-based Markov chain Monte Carlo in Matlab. (ZIP 46 kb)
DOI: 10.6084/m9.figshare.c.3665833_d2.v1
title: Additional file 5: of Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

description: List of related RNASeq normalized FPKM values for susceptible (BTx623) and tolerant (Hong Ke Zi) lines during cold stress retrieved from Chopra et al. [20]. (XLSX 10Â kb)
DOI: 10.17632/3pmy2t5v8r
title: Geological map, balanced and restored cross-sections, and 3D geological model of the Monte Fema area, Umbria-Marche Apennines (Italy) - Basilici et al., 2023

description: The Mt. Fema area is located within the 1:50,000 scale Sheet 325-Visso of the CARG project, in the Umbria- Marche Apennines. Here, inherited pre-orogenic deformation and multi-layered mechanical stratigraphy affect mountain belt evolution and cause along- and across-strike changes in structural architecture. Further complexity is caused by post-orogenic extensional tectonics dissecting the fold and thrust belt. In this work, we combined classical field methodologies with digital mapping and drone surveys to produce a 1:10,000 geological map of the Mt. Fema area. The resulting map was integrated with a 10 m-cell size DEM in a 3D environment to construct four balanced cross-sections that were used to document structural style and stratigraphic variations. One section was restored to quantify the amount of deformation related to both Neogene orogenic shortening and multiple extensional phases affecting the area. Ultimately, we built a 3D geological model to investigate the subsurface geometrical arrangement of strata and faults of different generations, thus the overall structural architecture of the fold and thrust belt. According to our interpretation, the Mt. Fema thrust system is characterized by relatively limited displacement (cumulative dip separation ranging from ~100 m to the north in Val di Tazza to ~500 m to the south in Valnerina). Reactivation of inherited normal faults was likely precluded because of their unfavourable orientation with respect to W-dipping thrusts. Inherited basin structure and mechanical stratigraphy govern folding by buckling mechanism, which in turn controls the locus of thrust propagation. Normal faults dissect the crestal region of the Mt. Fema anticline. These structures do not show evidence of surface faulting during recent seismic sequences, although earthquake epicentres fall within the study area. Our work provides new insights into the 3D structural architecture, timing, and kinematics of a key sector of the Umbria-Marche Apennines, with implications for a better understanding of the role of structural inheritance and subsequent extensional tectonics in the evolution of fold and thrust belts.
DOI: 10.17632/jm673jrwn3
title: Non-invasive detection of equid herpesviruses in fecal samples

description: Equid Herpesviruses (EHV) are pathogens of equid and non-equid hosts that can cause disease and fatalities in captivity and in the wild. EHVs establish latent infections but can reactivate, and most EHVs are shed via the nasal passage. Therefore, nasal swabs are generally used for EHV monitoring. However, invasive sampling of wild equids is difficult. While feces is a commonly used substrate for detecting other pathogens, to our knowledge EHVs have never been detected in feces of naturally infected equids. We systematically tested zebra feces for EHV presence by A) establishing nested PCR conditions for fecal DNA extracts, B) controlling for environmental EHV contamination, and C) large-scale testing on a free-ranging zebra population. A dilution minimizing inhibition while maximizing viral DNA concentration was determined in captive Grévys zebra (Equus grevyi) fecal samples from individuals shedding EHV nasally. Sixteen of 42 fecal samples (38%) were EHV-positive. To demonstrate that the EHV positivity was not a result of environmental contamination, rectal swabs of wild zebras were screened (N = 18; E. quagga and E. zebra), and 50% were EHV-positive, indicating that the source of EHV in feces is likely the intestinal mucosa, and not post-defecation contamination. Out of 270 fecal samples of wild zebras 26% were EHV-positive. Quantitative PCRs showed that the amount of virus DNA in feces was not significantly lower than in other samples. In summary, fecal sampling facilitates large scale screening and may be useful to non-invasively investigate phylogenetic EHV diversity in wild and domestic equids.
DOI: 10.17632/yjgxxg5vzr
title: Polar Ice core micro CT

description: The specimen (≈ 1𝑐𝑚3 bubbly ice) from polar ice core ExS5-1 was drilled in 2022 in North Greenland. It was scanned both axial and helical and Different processes were performed on these images to identify a proper scanning resolution and segmentation method. Details can be found in the corresponding article. The related code is in the following repository: https://github.com/Faramarz-bagherzadeh/MicroCT_Segmentation_3DUnet.git
DOI: 10.15468/dl.ybkc9r
title: Occurrence Download

description: A dataset containing 1649 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ipomoea batatas (L.) Lam.",
 "Year 2010-2025"
 ]
}

 The dataset includes 1649 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013052-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/g68pknt2n9
title: Data for Pineda et al 2020 Social dynamics obscure the effect of temperature on air breathing in Corydoras catfish

description: In some fishes, the ability to breathe air has evolved to overcome constraints in hypoxic environments but comes at a cost of increased predation. To reduce this risk, some species perform group air breathing. Temperature may also affect the frequency of air breathing in fishes, but this topic has received relatively little research attention. This study examined how acclimation temperature and acute exposure to hypoxia affected the air-breathing behaviour of a social catfish, the bronze corydoras Corydoras aeneus, to determine whether individual oxygen demand influenced the behaviour of entire groups. Groups of seven fish were observed in an arena to measure air-breathing frequency of individuals and consequent group air-breathing behaviour, under three oxygen concentrations (100%, 60%, 20% air saturation) and two acclimation temperatures (25°C & 30°C). Intermittent flow respirometry was used to estimate oxygen demand of individuals. Increasingly severe hypoxia increased air-breathing at the individual and group levels. While there were minimal differences in air-breathing frequency among individuals in response to an increase in temperature, the effect of temperature that did exist manifested as an increase in group air-breathing frequency at 30°C. Groups that were more socially cohesive during routine activity took more breaths but, in most cases, air-breathing among individuals this was not temporally clustered. There was no association between an individual’s oxygen demand and its air-breathing frequency in a group. For Corydoras aeneus, while air-breathing frequency is influenced by hypoxia, behavioural variation among groups could explain the small overall effect of temperature on group air-breathing frequency.
DOI: 10.17632/w5sjw4cbsh
title: New SEIR Epidemic Model in Excel- Example 3: Determining Time-Dependent Transmission Rate Coefficient and Calculating the Number of Total Infections by COVID-19 in the United States

description: The process of determining time-dependent transmission rate coefficient and calculating the number of total infections by COVID-19 in the United States and related results have been described in the attached word and excel files.
DOI: 10.17632/y52y2k6ndy
title: THE EMPIRICAL PROPERTIES OF EURO AREA M3, 1980-2017

description: Time series data on euro area M3 and its drivers
DOI: 10.6084/m9.figshare.6429452.v1
title: GUI for a historical database

description: In this research the characteristics of a <i>usable</i> Graphical User Interface (GUI) are determined in the context of a historical database. A GUI is an interface that enables users to directly interact with the content the GUI is build upon and the functionalities the GUI offers. The historical database is about former German citizens residing in the Netherlands, in the process of removing their <i>Enemy of the state </i>status. This status was given by the Dutch government in the aftermath of WWII, as a retribution for the German atrocities during WWII. The operation ended due to resistance amongst the Dutch citizens, after which the citizens could remove their <i>Enemy of the State</i> status. The mockup GUI incorporated the following <i>usable</i> characteristics; giving users the information they seek with justification, clear and useful functionalities of the GUI, simple in its use, and a structured layout. The mockup GUI was evaluated by average internet users, that tested the mockup GUI version interactively and reviewed their experience with usability statements. The mockup GUI was evaluated as good, so the given <i>usable</i> characteristics make the GUI usable.
DOI: 10.6084/m9.figshare.95948.v1
title: Bacterial doubling time, expressed in hours, as a function of the treatment

description: Day: Day of the measure (maximal doubling time over 24 hours growth period)<br> Phages: Experimental treatment (see the paper)<br> dt: Doubling time, in hours
DOI: 10.17632/2m6c3558xm
title: Data for: A Topology-Aware Access Control Model for Collaborative Cyber-Physical Spaces: Specification and Verification

description: The verification tool and input files of the case study and performance evaluation.
DOI: 10.17632/pcbp4kvp4r
title: CH4 and CO2 fluxes in different tectonic settings around the western margin of the Ordos block in China

description: The database contains CH4, CO2 fluxes and outputs in different tectonic settings around the western margin of the Ordos block in China, and CO2 fluxes near the fault zones in the world.
DOI: 10.6084/m9.figshare.14703087.v2
title: Animal observations at feeding station locations when studying the Brown rats in the Flevopark, Amsterdam

description: These datasets show the camera footage results of the vertebrate observations of three feeding stations over a period of 4 weeks. The feeding stations were located in the Flevopark in Amsterdam.
DOI: 10.6084/m9.figshare.21667763.v3
title: Consistency across multi-omics layers in a drug-perturbed gut microbial community

description: Pre-processed data used for generating figures of the paper.
DOI: 10.6084/m9.figshare.9202241.v1
title: Single-cell analysis of circulating tumor cells

description: Please refer to our publication:<br>Su Bin Lim, Trifanny Yeo, Wen Di Lee, Ali Asgar Bhagat, Swee Jin Tan, Daniel Shao Weng Tan, Wan-Teck Lim, and Chwee Teck Lim. Addressing cellular heterogeneity in tumor and circulation for refined prognostication. <b><i>PNAS</i></b>, 2019 (in press)<br><br>
DOI: 10.6084/m9.figshare.12834617.v4
title: Gender Bias In Online Reviews

description: This dataset contains 2 sets of data files that was used in studying genderbias in the evaluation and use of consumer online reviews. AmazonData.csv is data extracted from the Amazon site. YelpData.csv is data from the Yelp site. <br>
DOI: 10.6084/m9.figshare.28424432.v1
title: Hybrid Recommendation System with LLM and Bayesian Network

description: Intitulé du projet :Apprendre à représenter la causalité dans les systèmes de recommandation pilotés par les grands modèles de langage (LLM)Résumé:Ce référentiel contient les fichiers de données et le code source associés à une expérience sur un système de recommandation hybride, combinant un Large Language Model (LLM) et un réseau bayésien. L’objectif est d’améliorer la pertinence des recommandations produits en intégrant des caractéristiques sémantiques et comportementales.
DOI: 10.17632/jnmx23dzf9
title: Data for: Candidate Replacements for Lead in CH3NH3PbI3 from First Principles Calculations

description: Density functional theory calculations of the electronic structure and optical absorption for the orthorhombic phase of the hybrid organic-inorganic perovskites with various cation substitutions and for three different exchange-correlation functionals with and without including spin-orbit coupling interactions.
DOI: 10.17632/vj965x7jvc
title: Morphology Imantodes Cenchoa, Los Tuxtlas, México

description: This dataset contains morphological variables of the Blunt-headed tree snake Imantodes cenchoa from a population from Los Tuxtlas, Veracruz, México.
DOI: 10.6084/m9.figshare.24647943.v1
title: Supplementary of ivermectin plasma and whole blood method

description: <b>Supplementary material: </b><b>Determination of ivermectin in plasma and whole blood using LC-MS/MS</b>
DOI: 10.6084/m9.figshare.25958293.v1
title: The part 2 of dataset Indoor

description: Here we publish the part 2 of the dataset Indoor used in the paper "FM-Based Positioning via Deep Learning".
DOI: 10.17632/6t87xwfwph
title: Data for: Conversion of forest to cinnamon plantation depletes soil carbon stocks in the top metre of the tropical highlands of Kerinci Regency, Jambi Province, Indonesia

description: We quantified SOC stocks down the soil profile under cinnamon plantations of different ages in three locations in Kerinci Regency, Jambi Province, Indonesia. We collected soil cores at 10 cm intervals down the soil profile (to 1 m) to calculate total stocks of SOC under these land uses and to investigate the effect that natural forest conversion to cinnamon plantation has on topsoil and subsoil carbon. We then investigated whether the chemical composition of soil organic matter (SOM) changes down the soil profile and whether this was different under different land uses.
DOI: 10.17632/wggskc33f3
title: 2023 BMEL LEC Bioreactor Data

description: Source data used in the paper "A Bioreactor for In Vitro Studies of Lymphatic Endothelial Cells with Simultaneous Fluid Shear Stress and Membrane Strain". See file "001 - Data Map.pdf" for more info on datasets.