cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wmvj9y
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Casuarina equisetifolia"
 ]
}

 The dataset includes 202 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032179-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22b32b
title: Occurrence Download

description: A dataset containing 54049 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Xanthium strumarium)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 54049 records from 989 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032152-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/c2v4-mq22
title: campholene aldehyde + None - Aerosol study - heterogeneous reactivity - 2009-01-20

description: Publication of the dataset
DOI: 10.25326/8ncp-yb50
title: aldrin + None - Aerosol study - heterogeneous reactivity - 2004-04-07

description: Publication of the dataset
DOI: 10.25326/mep5-sn15
title: aldrin + None - Aerosol study - heterogeneous reactivity - 2004-06-09

description: Publication of the dataset
DOI: 10.25326/kz9x-0971
title: (-)-carveol + None - Aerosol study - heterogeneous reactivity - 2009-01-27

description: Publication of the dataset
DOI: 10.25326/3t13-rm53
title: campholene aldehyde + None - Aerosol study - heterogeneous reactivity - 2009-01-26

description: Publication of the dataset
DOI: 10.25326/8886-f156
title: terbuthylazine+oh radical + None - Aerosol study - heterogeneous reactivity - 2011-12-26

description: Publication of the dataset
DOI: 10.25326/hxqy-5236
title: alpha-pinene oxide + None - Aerosol study - heterogeneous reactivity - 2009-01-23

description: Publication of the dataset
DOI: 10.15468/dl.radudw
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acerodon leucotis (Sanborn, 1950)"
 ]
}

 The dataset includes 63 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009749-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/bjcq-8y75
title: alpha-pinene oxide + None - Aerosol study - heterogeneous reactivity - 2009-01-19

description: Publication of the dataset
DOI: 10.25326/dfck-p602
title: beta-pinene oxide + None - Aerosol study - heterogeneous reactivity - 2009-02-09

description: Publication of the dataset
DOI: 10.25326/vtek-5k37
title: beta-pinene oxide + None - Aerosol study - heterogeneous reactivity - 2009-02-11

description: Publication of the dataset
DOI: 10.25326/zqhm-nb58
title: beta-pinene oxide + None - Aerosol study - heterogeneous reactivity - 2009-01-16

description: Publication of the dataset
DOI: 10.25326/gr6k-md93
title: beta-pinene oxide + None - Aerosol study - heterogeneous reactivity - 2009-01-22

description: Publication of the dataset
DOI: 10.25326/j023-bw46
title: ammonium sulphate+glyoxal + None - Aerosol study - heterogeneous reactivity - 2016-07-11

description: Publication of the dataset
DOI: 10.17630/af0734db-e1c1-43b7-881f-81a1e0f53b94
title: Data underpinning Zhipeng Ke's thesis

description: Indefinite embargo applied. Embargo reason: permission not provided to allow public access
DOI: 10.15468/dl.72uc7b
title: Occurrence Download

description: A dataset containing 18088 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calanoides acutus (Giesbrecht, 1902)"
 ]
}

 The dataset includes 18088 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001506-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apkea9
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Serratula coronata"
 ]
}

 The dataset includes 238 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024739-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2p9yay
title: Occurrence Download

description: A dataset containing 558 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Tanzania, United Republic of",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Afzelia quanzensis Welw., Dalbergia melanoxylon Guill. & Perr.)"
 ]
}

 The dataset includes 558 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009617-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/3f6nx4
title: 2010-EGG-EST-0203-Arrak.ogg

description: Enregistrement audio en estonien avec interprétation en français ; interprète/traducteur : Kadri Põlluveer
DOI: 10.57745/0kpmcm
title: 2010-EGG-EST-0202-Arrak.ogg

description: Interprétation en français, interprète/traducteur : Kadri Põlluveer
DOI: 10.57745/sywgfn
title: 2010-EGG-EST-0201-Arrak.ogg

description: Enregistrement audio en version originale estonien
DOI: 10.5281/zenodo.14057121
title: Danish Student Grades

description: Danish student grades.

'All_data.csv' contains all the data.

'documentation.csv' contains the documentaiton.
DOI: 10.5281/zenodo.14057122
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14272171
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14273284
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14717658
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14717714
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14718862
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14738984
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14778435
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14802056
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14870565
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.14887030
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.15088542
title: Danish Student Grades

description: Danish student grades. Each csv corresponds to a years grades.

[Variable documentation to follow]
DOI: 10.5281/zenodo.15258506
title: Danish Student Grades

description: Danish student grades.

'All_data.csv' contains all the data.

'documentation.csv' contains the documentaiton.
DOI: 10.15468/dl.8mawgh
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Desmodium tortuosum (Sw.) DC."
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009618-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15472226
title: Data for all the figures
DOI: 10.5281/zenodo.15472227
title: Data for all the figures
DOI: 10.57724/jci_20250228_meridian_mis
title: MERIDIAN: Microorganisms in soils of Byers Peninsula (Livingston Is.)
DOI: 10.5061/dryad.r55fb
title: Data from: Species delimitation using genome-wide SNP data

description: The multispecies coalescent has provided important progress for
 evolutionary inferences, including increasing the statistical rigor and
 objectivity of comparisons among competing species delimitation models.
 However, Bayesian species delimitation methods typically require brute
 force integration over gene trees via Markov chain Monte Carlo (MCMC),
 which introduces a large computation burden and precludes their
 application to genomic-scale data. Here we combine a recently introduced
 dynamic programming algorithm for estimating species trees that bypasses
 MCMC integration over gene trees with sophisticated methods for estimating
 marginal likelihoods, needed for Bayesian model selection, to provide a
 rigorous and computationally tractable technique for genome-wide species
 delimitation. We provide a critical yet simple correction that brings the
 likelihoods of different species trees, and more importantly their
 corresponding marginal likelihoods, to the same common denominator, which
 enables direct and accurate comparisons of competing species delimitation
 models using Bayes factors. We test this approach, which we call Bayes
 factor delimitation (*with genomic data; BFD*), using common species
 delimitation scenarios with computer simulations. Varying the numbers of
 loci and the number of samples suggest that the approach can distinguish
 the true model even with few loci and limited samples per species.
 Misspecification of the prior for population size θ has little impact on
 support for the true model. We apply the approach to West African forest
 geckos (Hemidactylus fasciatus complex) using genome-wide SNP data. This
 new Bayesian method for species delimitation builds on a growing trend for
 objective species delimitation methods with explicit model assumptions
 that are easily tested.
description: Gecko SNP
 dataEmpirical SNP data for
 the Hemidactylus fasciatus complex. The zipped folder contains xml files
 for conducting species delimitation using the alternative models described
 in the paper.geckos.zipSimulation filesThe zipped folder contains the simulated SNP data in xml format for conducting species delimitation analysis.simulations.zip
DOI: 10.5061/dryad.gs4rk
title: Data from: "Transcriptome resources for the marmot flea and plague vector, Oropsylla silantiewi" in Genomic Resources Notes accepted 1 February 2014 to 31 March 2014

description: This article documents the public availability of raw transcriptome
 sequence data, 47,882 assembled unigenes as well as their functional
 annotations, and 13,052 deduced ORFs (open reading frame) of a plague
 vector Oropsylla silantiewi.
description: flea unigenes, ORFs, and
 functional annotationsflea.zip
DOI: 10.5061/dryad.s0c34
title: Data from: Japanese encephalitis in a 114-month-old cow: pathological investigation of the affected cow and genetic characterization of Japanese encephalitis virus isolate

description: Background: Japanese encephalitis virus (JEV) is classified into the genus
 Flavivirus in the family Flaviviridae. JEV can cause febrile illness and
 encephalitis mainly in humans and horses, and occasionally in cattle. Case
 presentation: In late September 2010, a 114-month-old cow showed
 neurological symptoms similar to the symptoms observed in previous bovine
 cases of Japanese encephalitis (JE); therefore, we conducted virological
 and pathological tests on the cow. As a result, JEV was isolated from the
 cerebrum of the affected cow. We determined the complete genome sequence
 of the JEV isolate, which we named JEV/Bo/Aichi/1/2010, including the
 envelope (E) gene region and 3' untranslated region (3'UTR). Our
 phylogenetic analyses of the E region and complete genome showed that the
 isolate belongs to JEV genotype 1 (G1). The isolate, JEV/Bo/Aichi/1/2010,
 was most closely related to several JEV G1 isolates in Toyama Prefecture,
 Japan in 2007-2009 by the phylogenetic analysis of the E region. In
 addition, the nucleotide alignment revealed that the deletion in the
 3'UTR was the same between JEV/Bo/Aichi/1/2010 and several other JEV
 G1 isolates identified in Toyama Prefecture in 2008-2009. A
 hemagglutination inhibition (HI) test was conducted for the detection of
 anti-JEV antibodies in the affected cow, and the test detected
 2-mercaptoethanol (2-ME)-sensitive HI antibodies against JEV in the serum
 of the affected cow. The histopathological investigation revealed
 nonsuppurative encephalomyelitis in the affected cow, and the
 immunohistochemical assay detected JEV antigen in the cerebrum.
 Conclusion: We diagnosed the case as JE of a cow based on the findings of
 nonsuppurative encephalomyelitis observed in the central nervous system,
 JEV antigen detected in the cerebrum, JEV isolated from the cerebrum, and
 2-ME-sensitive HI antibodies against JEV detected in the serum. This is
 the first reported case of JE in a cow over 24 months old.
description: Phylogenetic tree_JEV E
 regionPhylogenetic profile
 showing the relationships between JEV/Bo/Aichi/1/2010 and other JEV
 isolates based on a comparison of the E gene.Phylogenetic tree_JEV
 full genomePhylogenetic profile
 showing the relationships between JEV/Bo/Aichi/1/2010 and other JEV
 isolates based on a comparison of the complete genome.Alignment_JEV E
 regionAligned nucleotide
 sequences of the E gene of JEV/Bo/Aichi/1/2010 and other JEV isolates
 (aligned by using MEGA5).Alignment_JEV full
 genomeAligned nucleotide
 sequences of the complete genome of JEV/Bo/Aichi/1/2010 and other JEV
 isolates (aligned by using MEGA5).
DOI: 10.5061/dryad.mm011
title: Data from: Decreased root heterogeneity and increased root length following grassland invasion

description: 1. Plant invasions can be promoted by environmental heterogeneity, but the
 opposite effect, the impact of plant invasion on heterogeneity, has
 received little attention. Grassland invasions might contribute to
 decreased spatial heterogeneity because invaders tend to be larger than
 native vegetation. Lowered heterogeneity may contribute to the low
 diversity of invaded communities, as well as to the persistence of
 invasive populations. 2. We compared the spatial heterogeneity of roots
 and resources in uninvaded native grassland and in stands invaded by a
 relatively large exotic grass (Agropyron cristatum), in four combinations
 of mowing and nitrogen (N) addition. We focused on roots because they
 account for the majority of primary production in grasslands. 3. The
 spatial heterogeneity of root length (m root / m2 rhizotron image) and
 root production was significantly lower beneath A. cristatum than
 uninvaded grassland. This result was consistent in all combinations of
 mowing and N addition. 4. Beneath the invader, root length was
 significantly greater, and the proportion of samples that contained roots
 was significantly higher. This suggests that the invader decreased spatial
 heterogeneity by more completely filling the soil volume with roots. 5.
 Resource heterogeneity varied significantly between vegetation types in
 just one out of four cases examined, suggesting that invader effects on
 resource heterogeneity were small relative to its effects on root
 heterogeneity. 6. These results suggest a novel mechanism promoting
 invader success and persistence: high root heterogeneity, lower root
 length, and empty soil volumes in native grassland may make it relatively
 vulnerable to invasion, while reduced heterogeneity and greater root
 length in invaded grasslands may sustain stable, low-diversity communities
 dominated by the invader. Lowered heterogeneity accompanying invasion may
 partly account for the wide-spread occurrence of low diversity, invader
 dominated grasslands in North America.
description: MLXRoots2007Root lengthMLXResources2007Soil N and moisture
DOI: 10.5061/dryad.k257g
title: Data from: On the evolution of migration in heterogeneous environments

description: Populations often experience variable conditions, both in time and space.
 Here we develop a novel theoretical framework to study the evolution of
 migration under the influence of spatially and temporally variable
 selection and genetic drift. First we examine when polymorphism is
 maintained at a locus under heterogeneous selection, as a function of the
 pattern of spatial heterogeneity and the migration rate. In a second step,
 we study how levels of migration evolve under the joint action of kin
 competition and local adaptation at a polymorphic locus. This analysis
 reveals the existence of evolutionary bistability where a low or a high
 migration rate may evolve depending on the initial conditions. Last, we
 relax several assumptions regarding selection heterogeneity commonly made
 in previous studies and explore the consequences of more complex spatial
 and temporal patterns of variability in selection on the evolution of
 migration. We found that small modifications in the pattern of
 environmental heterogeneity may have dramatic effects on the evolution of
 migration. This work highlights the importance of considering more general
 scenarios of environmental heterogeneity when studying the evolution of
 life history traits in ecologically complex settings.
description: dataIncludes the Mathematica
 notebook for analysis, the C++ code for individual based simulations, and
 the csv files with results of simulations.
DOI: 10.5061/dryad.7gg47
title: Data from: Climate-mediated movement of an avian hybrid zone

description: The interaction between sibling species that share a zone of contact is a
 multifaceted relationship affected by climate change. Between sibling
 species, interactions may occur at whole-organism (direct or indirect
 competition) or genomic (hybridization and introgression) levels. Tracking
 hybrid zone movements can provide insights about influences of
 environmental change on species interactions. Here, we explore the extent
 and mechanism of movement of the contact zone between black-capped
 chickadees (Poecile atricapillus) and Carolina chickadees (Poecile
 carolinensis) at whole-organism and genomic levels. We find strong
 evidence that winter temperatures limit the northern extent of P.
 carolinensis by demonstrating a current-day association between the range
 limit of this species and minimum winter temperatures. We further show
 that this temperature limitation has been consistent over time because we
 are able to accurately hindcast the previous northern range limit under
 earlier climate conditions. Using genomic data, we confirm northward
 movement of this contact zone over the past decade and highlight
 temporally consistent differential—but limited—geographic introgression of
 alleles. Our results provide an informative example of the influence of
 climate change on a contact zone between sibling species.
description: Chickadee SNP
 dataGenotypes of 1425 SNPs
 for the 167 chickadees described in the manuscript. Chickadees were
 sampled in southeastern Pennsylvania. SNPs were identified using GBS
 (genotyping by sequencing), in conjunction with the UNEAK pipeline (part
 of Tassel) and a Perl script to call genotypes in a max likelihood
 framework.GBS_DRYAD.xlsx
DOI: 10.5061/dryad.kd38f
title: Data from: Analysis and visualization of complex macroevolutionary dynamics: an example from Australian scincid lizards

description: The correlation between species diversification and morphological
 evolution has long been of interest in evolutionary biology. We
 investigated the relationship between these processes during the radiation
 of 250+ scincid lizards that constitute Australia's most species-rich
 clade of terrestrial vertebrates. We generated a time-calibrated
 phylogenetic tree for the group that was more than 85% complete at the
 species level and collected multivariate morphometric data for 183
 species. We reconstructed the dynamics of species diversification and
 trait evolution using a Bayesian statistical framework (BAMM) that
 simultaneously accounts for variation in evolutionary rates through time
 and among lineages. We extended the BAMM model to accommodate
 time-dependent phenotypic evolution, and we describe several new methods
 for summarizing and visualizing macroevolutionary rate heterogeneity on
 phylogenetic trees. Two major clades (Lerista, Ctenotus; &gt; 90 spp.
 each) are associated with high rates of species diversification relative
 to the background rate across Australian sphenomorphine skinks. The
 Lerista clade is characterized by relatively high lability of body form
 and has undergone repeated instances of limb reduction, but Ctenotus is
 characterized by an extreme deceleration in the rate of body shape
 evolution. We estimate that rates of phenotypic evolution decreased by
 more than an order of magnitude in the common ancestor of the Ctenotus
 clade. These results provide evidence for a modal shift in phenotypic
 evolutionary dynamics and demonstrate that major axes of morphological
 variation can be decoupled from species diversification. More generally,
 the Bayesian framework described here can be used to identify and
 characterize complex mixtures of dynamic processes on phylogenetic trees.
description: Scripts, data, and
 appendix for "Analysis and visualization of complex macroevolutionary
 dynamics"Appendix, with
 Supplementary Figure S1 - S11 and tables S1-S2. Data files: DNA sequence
 alignments and morphological dataset. Source code (C++ and R) for analysis
 and visualization.rabosky_dryad_feb23.zip
DOI: 10.5061/dryad.1mp91
title: Data from: Local gamete competition explains sex allocation and fertilization strategies in the sea

description: Within and across taxa, there is much variation in the mode of
 fertilization, i.e. whether eggs and/or sperm are released or kept inside
 or on the surface of the parent's body. Although the evolutionary
 consequences of fertilization mode are far reaching, transitions in the
 fertilization mode itself have largely escaped theoretical attention. Here
 we develop the first evolutionary model of egg retention and release,
 which also considers transitions between hermaphroditism and dioecy as
 well as egg size evolution. We provide a unifying explanation for reported
 associations between small body size, hermaphroditism, and egg retention
 in marine invertebrates that have puzzled researchers for over three
 decades. Our model, by including sperm limitation, shows that all these
 patterns can arise as an evolutionary response to local competition
 between eggs for fertilization. This can provide a general explanation for
 three empirical patterns: Sperm casters tend to be smaller than related
 broadcast spawners, hermaphroditism is disproportionately common in sperm
 casters, and offspring of sperm casters are larger. Local gamete
 competition also explains a universal sexual asymmetry: females of some
 species retain their gametes while males release theirs, but the opposite
 ('egg casting') lacks evolutionary stability and is apparently
 not found in nature.
description: Data for robustness
 analysisPlease see the file
 README.pdf.