cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18337713
title: WE_Brand4_100F_1_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 100F SC sample 1 WE   - EDLC Single - Brand4

Part of the Constant Temperature DataBase
DOI: 10.5281/zenodo.18337714
title: WE_Brand4_100F_1_23C_0k_EDLC_single

description: MetSuperCap Project Dataset 100F SC sample 1 WE   - EDLC Single - Brand4

Part of the Constant Temperature DataBase
DOI: 10.5061/dryad.s813p55
title: Data from: Inter- and intra-specific genomic divergence in Drosophila montana shows evidence for cold adaptation

description: [No abstract entered]
description: D. montana gff
 fileGenome annotation file
 for D. montana genome (Accession number: LUVX00000000)D.mont_freeze_v1.4.gff.txt
DOI: 10.13140/rg.2.2.17999.34725
title: 🚀 NDVI Mapping & Vegetation Classification of Pakistan (Sentinel-2 + Google Earth Engine) 🌍🌱
DOI: 10.5061/dryad.q8vh197
title: Data from: Reproductive effort and success of males in scramble competition polygyny: evidence for trade-offs between foraging and mate-search

description: 1. Patterns of male reproductive allocation provide insight into
 life-history characteristics. The trade-offs associated with resource and
 female group defense are well-defined. However, less is understood about
 trade-offs in species that practice scramble-competition polygyny, where
 successful strategies may favor competitive mate-searching rather than
 contest competition and fighting. 2. White-tailed deer (Odocoileus
 virginianus) practice scramble-competition polygyny where solitary males
 search for and assess receptivity of females scattered across the
 landscape. Physically mature males are expected to do most of the breeding
 because of the high energetic costs of reproduction and high social
 status. However, young males may collectively sire one-third of offspring.
 To gain a better understanding of trade-offs associated with
 scramble-competition polygyny, we quantified metrics associated with
 reproductive effort and success. 3. We quantified changes in body mass of
 harvested males, energetic costs of locomotion based on movements of GPS
 radio-collared males, and timing of reproduction via temporal genetic
 parentage assignments. 4. Young males (1.5 and 2.5 years old) sired
 offspring, but their mating success was mainly limited to peak rut, when
 most females were in estrus. Furthermore, multiple paternity was common,
 indicating opportunistic reproduction. Reproductive effort, indexed by
 body mass loss, was highest in prime-age males (5.5-6.5 years old).
 Surprisingly, young and post-prime males also exhibited significant body
 mass loss, indicative of investment in reproductive effort. Movement rates
 increased 2 to 4-fold during rut as a function of mate-search activities,
 but cost of locomotion would cause only about one-third of observed body
 mass loss. Because males are capital breeders, we infer most of body mass
 loss is due to reduced foraging. 5. In scramble-competition polygyny, the
 repeated location of potential mates and assessment of their estrous
 status appear to be important constituents of male mating strategies.
 Therefore mating success may be influenced by time management and spatial
 memory, and not based solely on social dominance. Thus, reproductive
 effort should be greater for individuals capable of reducing time
 foraging. For those that cannot, opportunistic mating opportunities may
 arise when operative adult sex ratios are low. Our analyses reveal
 valuable insight into the trade-offs associated with scramble-competition
 polygyny.
description: raw-data-buck-mass-movementsRaw data of male white-tailed deer harvest records and GPS coordinates from radio-collars.raw-data.zip
DOI: 10.5061/dryad.ht92839
title: Data from: Associations between tau, Aβ, and cortical thickness with cognition in Alzheimer disease

description: Objective To examine the cross-sectional associations between regional
 tau, β-amyloid (Aβ), and cortical thickness and neuropsychological
 function across the preclinical and clinical spectrum of Alzheimer disease
 (AD). Methods We included 106 participants from the Swedish Biomarkers for
 Identifying Neurodegenerative Disorders Early and Reliably (BioFINDER)
 study, of whom 33 had preclinical AD (Aβ-positive cognitively normal
 individuals), 25 had prodromal AD (Aβ-positive mild cognitive impairment),
 and 48 had probable AD dementia. All underwent [18F]flortaucipir (tau) and
 structural MRI (cortical thickness), and 88 of 106 underwent
 [18F]flutemetamol (Aβ) PET. Linear regression models adjusted for age,
 sex, and education were performed to examine associations between 7
 regions of interest and 7 neuropsychological tests for all 3 imaging
 modalities. Results In preclinical AD, [18F]flortaucipir, but not
 [18F]flutemetamol or cortical thickness, was associated with decreased
 global cognition, memory, and processing speed (range standardized β =
 0.35–0.52, p &lt; 0.05 uncorrected for multiple comparisons). In the
 combined prodromal AD and AD dementia group, both increased
 [18F]flortaucipir uptake and reduced cortical thickness were associated
 with worse performance on a variety of neuropsychological tests (most
 regions of interest survived correction for multiple comparisons at p
 &lt; 0.05), while increased [18F]flutemetamol uptake was specifically
 associated with lower scores on a delayed recall memory task (p &lt;
 0.05 uncorrected for multiple comparisons). The strongest effects for both
 [18F]flortaucipir and cortical thickness on cognition were found in the
 lateral and medial parietal cortex and lateral temporal cortex. The effect
 of [18F]flutemetamol on cognition was generally weaker and less region
 specific. Conclusion Our findings suggest that tau PET is more sensitive
 than Aβ PET and measures of cortical thickness for detecting early
 cognitive changes in preclinical AD. Furthermore, both [18F]flortaucipir
 PET and cortical thickness show strong cognitive correlates at the
 clinical stages of AD.
description: Ossenkoppele_et_al_Neurology_Supplementary_Materials
DOI: 10.5061/dryad.8v9d969
title: Data from: Carotenoid-based skin ornaments reflect foraging propensity in a seabird, Sula leucogaster

description: Carotenoid-based ornaments are common signaling features in animals. It
 has long been proposed that such ornaments communicate information about
 foraging abilities to potential mates. However, evidence linking foraging
 with ornamentation is largely missing from unmanipulated, free-ranging
 populations. To investigate this relationship, we studied the brown booby
 (Sula leucogaster brewsteri), a seabird with a carotenoid-based gular skin
 ornament. 13C values from both feathers and blood plasma were negatively
 correlated with male gular color, indicating birds that consumed more
 pelagic prey in offshore locations had more ornamented skin than those
 that fed on nearshore, benthic prey. This relationship was supported by
 our GPS tracking results, which revealed longer, more offshore foraging
 trips among highly-ornamented males. Our data show that brown booby
 ornaments are honest indicators of foraging propensity; a link consistent
 with the rarity hypothesis and potentially driven by the concentration of
 carotenoids found in phytoplankton versus benthic algae. Carotenoid-based
 ornaments may reflect foraging tendencies among animals that feed in
 multiple ecosystems, thereby creating ornament systems tied to habitat
 quality and potentially vulnerable to anthropogenic effects.
description: Isotopic, color, and GPS
 data from Marietas Islands brown boobiesData file containing
 carbon stable isotope data, gulag skin color data, and GPS data collected
 from brown boobies studied in 2012 and 2016 from the Marietas Islands off
 the Pacific coast of Mexico. Samples and color data were collected in the
 field, and GPS data and isotopic samples were processed post-fieldwork
 season.Isotope Color and GPS data from
 Marietas Island Brown Boobies.xlsx
DOI: 10.5061/dryad.bt4q242
title: Data from: Unravelling the history of hepatitis B virus genotypes A and D infection using a full-genome phylogenetic and phylogeographic approach

description: Hepatitis B virus (HBV) infection constitutes a global public health
 problem. In order to establish how HBV was disseminated across different
 geographic regions, we estimated the levels of regional clustering for
 genotypes D and A. We used 916 HBV-D and 493 HBV-A full-length sequences
 to reconstruct their global phylogeny. Phylogeographic analysis was
 conducted by reconstruction of ancestral states using the criterion of
 parsimony. The putative origin of genotype D was in North Africa/Middle
 East. HBV-D sequences form low levels of regional clustering for the
 Middle East and Southern Europe. In contrast, HBV-A sequences form two
 major clusters, the first including sequences mostly from sub-Saharan
 Africa, and the second including sequences mostly from Western and Central
 Europe. Conclusion: We observed considerable differences in the global
 dissemination patterns of HBV-D and HBV-A and different levels of
 monophyletic clustering in relation to the regions of prevalence of each
 genotype.
description: HBV_Genotype_A_sequence
 alignmentHBV genotype A
 full-length genomic sequence alignment after the exclusion of multiple
 sequences per patient. Sequence identifiers include accesion number of
 geographic area of samplingHBV_Genotype
 D_sequence_alignmentHBV genotype D
 full-length genomic sequence alignment after the exclusion of multiple
 sequences per patient. Sequence identifiers include accesion number of
 geographic area of sampling
DOI: 10.5061/dryad.70f538g
title: Data from: Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium

description: Herbaria contain a cumulative sample of the world’s flora, assembled by
 thousands of people over several hundred years. Recent advances in
 computation, DNA sequencing, and image manipulation have allowed us to
 capitalize on this resource. Using herbarium material, we conducted a
 species-level analysis of a major clade in the grass tribe Andropogoneae,
 which includes the dominant species of the world’s grasslands, from the
 genera Andropogon, Schizachyrium, Hyparrhenia, and other groups. We imaged
 188 of the 250 available species of the clade, georeferenced the
 specimens, and extracted climatic variables for each. Using semiand fully
 automated image analysis techniques, we extracted spikelet morphological
 characters and correlated these with environmental variables. We are
 currently generating chloroplast genome sequences to correct for
 phylogenetic covariance and here present an analysis of a subset of 81
 species, representing the power of this approach. In addition to
 taxonomic/phylogenetic observations, we find all morphological and
 ecological characters are homoplasious but variable among clades. For
 example, sessile spikelet length is positively correlated with awn length
 when all accessions are considered, but when separated by clade, the
 relationship is positive for five sub-clades and negative for three
 others. Macrohair density and pedicel length were negatively correlated
 with precipitation.
description: McAllister_etal_Dryad_Submission.tarSee README.
DOI: 10.5281/zenodo.18386501
title: Source Data of "3D crustal model of Southern Apennines (Italy) by integrating geological, geophysical and petrophysical constraints"

description: Downloadable Files

The following table lists all supplementary files associated with this study. Each file corresponds to a dataset or model component used in the construction and validation of the 3D crustal framework and is provided in the indicated formats.

 






Item



Reference Figure in main text



Description



Format(s)





Traces of the relevant structural features 



figure 3



Three structural traces shown in Fig. 3 (labelled [1], [2], [3] in red); each file contains the X-Y UTM33N coordinates of the mapped structural feature.



.dat





Retrieved intra-crustal discontinuities



figure 7



Surfaces shown in Fig. 7 exported with the selected resolution of (5 × 5 × 1) km, these are provided in both ASCII and grid formats.



.dat, .grd





ViDEPI well data crossing mesozoic limestones



figure 10



Names and UTM coordinates of the ViDEPI wells intersecting the top of the Mesozoic carbonate platform.The locations of the wells and the traces of the profiles are shown in Fig. 9 of the main text. The five geological profiles are illustrated in Fig. 10, where the positions of the corresponding wells along each profile (green dots) are indicated. For each profile, a dedicated TXT file is provided containing:(i) the numeric well ID associated with the five profiles shown in Figs. 9–10;(ii) the progressive distance along the profile;(iii) the X and Y UTM coordinates; and(iv) the depth of the carbonate target (m b.s.l.).



.txt
DOI: 10.5281/zenodo.18386502
title: Source Data of "3D crustal model of Southern Apennines (Italy) by integrating geological, geophysical and petrophysical constraints"

description: Downloadable Files

The following table lists all supplementary files associated with this study. Each file corresponds to a dataset or model component used in the construction and validation of the 3D crustal framework and is provided in the indicated formats.

 






Item



Reference Figure in main text



Description



Format(s)





Traces of the relevant structural features 



figure 3



Three structural traces shown in Fig. 3 (labelled [1], [2], [3] in red); each file contains the X-Y UTM33N coordinates of the mapped structural feature.



.dat





Retrieved intra-crustal discontinuities



figure 7



Surfaces shown in Fig. 7 exported with the selected resolution of (5 × 5 × 1) km, these are provided in both ASCII and grid formats.



.dat, .grd





ViDEPI well data crossing mesozoic limestones



figure 10



Names and UTM coordinates of the ViDEPI wells intersecting the top of the Mesozoic carbonate platform.The locations of the wells and the traces of the profiles are shown in Fig. 9 of the main text. The five geological profiles are illustrated in Fig. 10, where the positions of the corresponding wells along each profile (green dots) are indicated. For each profile, a dedicated TXT file is provided containing:(i) the numeric well ID associated with the five profiles shown in Figs. 9–10;(ii) the progressive distance along the profile;(iii) the X and Y UTM coordinates; and(iv) the depth of the carbonate target (m b.s.l.).



.txt
DOI: 10.5061/dryad.hk07677
title: Data from: Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based setting

description: Objective: We explored genetic and lifestyle risk factors of MRI-defined
 brain infarcts (BI) in large population-based cohorts. Methods: We
 performed meta-analyses of genome-wide association studies (GWAS) and
 examined associations of vascular risk factors and their genetic risk
 scores (GRS) with MRI-defined BI and a subset of BI, namely small
 sub-cortical BI (SSBI), in eighteen population-based cohorts (N=20,949)
 from five ethnicities (3,726 with BI, 2,021 with SSBI). Top loci were
 followed up in seven population-based cohorts (N=6,862, 1,483 with BI, 630
 with SBBI), and tested associations with related phenotypes including
 ischemic stroke and pathologically-defined BI. Results: The mean
 prevalence was 17.7% for BI and 10.5% for SSBI, steeply rising after age
 65. Two loci showed genome-wide significant association with BI: FBN2,
 P=1.77×10-8 and LINC00539/ZDHHC20, P=5.82×10-9. Both have been associated
 with blood pressure (BP) related phenotypes, but did not replicate in the
 smaller follow-up sample nor show associations with related phenotypes.
 Age and sex-adjusted associations with BI and SSBI were observed for BP
 traits (P-value for BI, P[BI]=9.38×10-25; P[SSBI]=5.23×10-14 for
 hypertension), smoking (P[BI]=4.4×10-10; P[SSBI]=1.2×10-4), diabetes
 (P[BI]=1.7×10-8; P[SSBI]=2.8×10-3), previous cardiovascular disease
 (P[BI]=1.0×10-18; P[SSBI]=2.3×10-7), stroke (P[BI]=3.9×10-69;
 P[SSBI]=3.2×10-24), and MRI-defined white matter hyperintensity burden
 (P[BI]=1.43×10-157; P[SSBI]=3.16×10-106), but not with body-mass-index or
 cholesterol. GRS of BP traits were associated with BI and SSBI (P≤0.0022),
 without indication of directional pleiotropy. Conclusions: In this
 multi-ethnic GWAS meta-analysis, including over 20,000 population-based
 participants, we identified genetic risk loci for BI requiring validation
 once additional large datasets become available. High BP, including
 genetically determined, was the most significant modifiable, causal risk
 factor for BI.
description: Genetic and lifestyle
 risk factors for MRI-defined brain infarcts in a population-based study -
 Supplemental dataThis file contains the
 supplemental data to the article entitled "Genetic and lifestyle risk
 factors for MRI-defined brain infarcts in a population-based study".
 It contains additional methods paragraphs 1 to 4, supplemental tables 1 to
 17, supplemental figures 1 to 7, and additional
 referencesDryad_supplement_140718_c.docx
DOI: 10.5061/dryad.b56tm0t
title: Data from: Landscape genomics provides evidence of climate-associated genetic variation in Mexican populations of Quercus rugosa Nee

description: Local adaptation is a critical evolutionary process that allows plants to
 grow better in their local compared to nonnative habitat and results in
 species-wide geographic patterns of adaptive genetic variation. For forest
 tree species with a long generation time, this spatial genetic
 heterogeneity can shape the ability of trees to respond to rapid climate
 change. Here, we identify genomic variation that may confer local
 environmental adaptations and then predict the extent of adaptive mismatch
 under future climate as a tool for forest restoration or management of the
 widely distributed high-elevation oak species Quercus rugosa in Mexico.
 Using genotyping-by-sequencing, we identified 5354 single-nucleotide
 polymorphisms (SNPs) genotyped from 103 individuals across 17 sites in the
 Trans-Mexican Volcanic Belt, and, after controlling for neutral genetic
 structure, we detected 74 FST-outlier SNPs and 97 SNPs associated with
 climate variation. Then, we deployed a nonlinear multivariate model,
 Gradient Forest (GF), to map turnover in allele frequencies along
 environmental gradients and predict areas most sensitive to climate
 change. We found that spatial patterns of genetic variation were most
 strongly associated with precipitation seasonality and geographical
 distance. We identified regions of contemporary genetic and climatic
 similarities, and predicted regions where future populations of Q. rugosa
 might be at risk due to high expected rate of climate change. Our findings
 provide preliminary details for future management strategies of Q. rugosa
 in Mexico and also illustrate how a landscape genomic approach can provide
 a useful tool for conservation and resource management strategies.
description: FinalMAF01_Pruned103_5354VCF file of LD pruned SNPs. The file contains 5354 diallelic SNPs from 103 Q. rugosa individuals used in all further statistical analyses, including Genepop, Strucuture, LFMM, Bayescan, Gradient Forests. Details of geographic location of sampling sites, climate data and sample sizes per population are provided in Supporting Information (Table S1).gradient_forestsThe directory gradient_forests contains the readme of gradient forests analyses in R format (named GradientForests_commands.R) and all the necessary input files
DOI: 10.5061/dryad.56mh682
title: Data from: Give the machine a hand: a Boolean time-based decision-tree template for rapidly finding animal behaviours in multi-sensor data

description: 1. The development of multi-sensor animal-attached tags, recording data at
 high frequencies, has enormous potential in allowing us to define animal
 behaviour. 2. The high volumes of data, are pushing us towards
 machine-learning as a powerful option for distilling out behaviours.
 However, with increasing parallel lines of data, systems become more
 likely to become processor limited and thereby take appreciable amounts of
 time to resolve behaviours. 3. We suggest a Boolean approach whereby
 critical changes in recorded parameters are used as sequential templates
 with defined flexibility (in both time and degree) to determine individual
 behavioural elements within a behavioural sequence that, together, makes
 up a single, defined behaviour. 4. We tested this approach, and compared
 it to a suite of other behavioural identification methods, on a number of
 behaviours from tag-equipped animals; sheep grazing, penguins walking,
 cheetah stalking prey and condors thermalling. 5. Overall behaviour
 recognition using our new approach was better than most other methods due
 to; (i) its ability to deal with behavioural variation and (ii) the speed
 with which the task was completed because extraneous data are avoided in
 the process. 6. We suggest that this approach is a promising way forward
 in an increasingly data-rich environment and that workers sharing
 algorithms can provide a powerful library for the benefit of all involved
 in such work.
description: LoCoD
 datadata in txt and raw
 format for upload in DDMT LoCoD behaivour building. Includes data from
 four species with their different behaviours: Penguin walking, Sheep
 biting, Condor thermalling and a Cheetah stalking. DDMT software can be
 found at the URL
 http://ggluck.swan.ac.uk/ftp/DDMT%20new%20version/
DOI: 10.5061/dryad.3vv31qq
title: Data from: Mutation in the intracellular chloride channel CLCC1 associated with autosomal recessive retinitis pigmentosa

description: We identified a homozygous missense alteration (c.75C&gt;A, p.D25E) in
 CLCC1, encoding a presumptive intracellular chloride channel highly
 expressed in the retina, associated with autosomal recessive retinitis
 pigmentosa (arRP) in eight consanguineous families of Pakistani descent.
 The p.D25E alteration decreased CLCC1 channel function accompanied by
 accumulation of mutant protein in granules within the ER lumen, while
 siRNA knockdown of CLCC1 mRNA induced apoptosis in cultured ARPE-19 cells.
 TALEN KO in zebrafish was lethal 11 days post fertilization. The depressed
 electroretinogram (ERG) cone response and cone spectral sensitivity of 5
 dpf KO zebrafish and reduced eye size, retinal thickness, and expression
 of rod and cone opsins could be rescued by injection of wild type CLCC1
 mRNA. Clcc1+/- KO mice showed decreased ERGs and photoreceptor number.
 Together these results strongly suggest that intracellular chloride
 transport by CLCC1 is a critical process in maintaining retinal integrity,
 and CLCC1 is crucial for survival and function of retinal cells.
description: Raw
 dataThis submission includes
 three files:1) WES vcf file for individual 12 of Family 1, 2)WES vcf file
 for Individual 5 of family 6, and 3) SNP chip data for all individuals
 shown in figure S2.