cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6368483
title: Convolutions are competitive with transformers for protein sequence pretraining

description: - Pretrained models of protein sequences. See https://github.com/microsoft/protein-sequence-models for instructions on how to load models. - IDR datasets used for evaluation. - March 2020 version of UniRef50 with splits used for training.
DOI: 10.5281/zenodo.6564980
title: Interface-based Classification of Token Contracts on Ethereum

description: Dataset for the bachelor thesis "Interface-based Classification of Token Contracts on Ethereum". <strong>Contents:</strong> <em>type_&lt;x&gt;_rules.json</em>: Rules for Type &lt;x&gt;. <em>type_1_rules_extended.json</em>: Type I rules extended by functions within Levenshtein distance of 1 of original Type I rules. <em>word_occurences.json</em>: Words sorted by how many unique functions they occur in. <em>word_coverage_potential.json</em>: Words sorted by how many function occurrences functions including the word make up. <em>categorized_functions_with_origins.json</em>: each categorized function, including key statistics such as the number of skeletons implementing them. Each function includes a list of Type I, II, III rules that captured it. <em>top_rules_per_category.json</em>: The rules for each category sorted by how many occurrences they captured. <em>skeletons_with_compliance.json</em>: Each skeleton's known functions and events and information about what standards they comply with.
DOI: 10.5281/zenodo.6564979
title: Interface-based Classification of Token Contracts on Ethereum

description: Dataset for the bachelor thesis "Interface-based Classification of Token Contracts on Ethereum". <strong>Contents:</strong> <em>type_&lt;x&gt;_rules.json</em>: Rules for Type &lt;x&gt;. <em>type_1_rules_extended.json</em>: Type I rules extended by functions within Levenshtein distance of 1 of original Type I rules. <em>word_occurences.json</em>: Words sorted by how many unique functions they occur in. <em>word_coverage_potential.json</em>: Words sorted by how many function occurrences functions including the word make up. <em>categorized_functions_with_origins.json</em>: each categorized function, including key statistics such as the number of skeletons implementing them. Each function includes a list of Type I, II, III rules that captured it. <em>top_rules_per_category.json</em>: The rules for each category sorted by how many occurrences they captured. <em>skeletons_with_compliance.json</em>: Each skeleton's known functions and events and information about what standards they comply with.
DOI: 10.5281/zenodo.6533809
title: Borg tandem repeats undergo rapid evolution and are under strong selection to create new intrinsically disordered regions in proteins

description: This repository contains files that accompany the Schoelmerich <em>et al. </em>(2022) bioRxiv preprint. These files include - all Borg proteins used for protein family clustering (all_Borg_proteins.fasta) - 37 additional aaTR-proteins from manually curated Borg contigs (37_Borg_aaTR-proteins.fasta) - IQ-TREE of Borg DNA polymerases and reference sequences from doi: 10.1093/nar/gkaa760 (DNAPolB_iqtree.treefile) - Borg Sm ribonucleoprotein sequences (21_Borg_Sm_ribonucleoproteins.fasta) - Borg MHC sequences (14_Borg_MHC_proteins.fasta) - AlphaFold2 predicted structural models of Borg Sm ribonucleoproteins and MHCs with aaTRs
DOI: 10.5281/zenodo.6533808
title: Borg tandem repeats undergo rapid evolution and are under strong selection to create new intrinsically disordered regions in proteins

description: This repository contains files that accompany the Schoelmerich <em>et al. </em>(2022) bioRxiv preprint. These files include - all Borg proteins used for protein family clustering (all_Borg_proteins.fasta) - 37 additional aaTR-proteins from manually curated Borg contigs (37_Borg_aaTR-proteins.fasta) - IQ-TREE of Borg DNA polymerases and reference sequences from doi: 10.1093/nar/gkaa760 (DNAPolB_iqtree.treefile) - Borg Sm ribonucleoprotein sequences (21_Borg_Sm_ribonucleoproteins.fasta) - Borg MHC sequences (14_Borg_MHC_proteins.fasta) - AlphaFold2 predicted structural models of Borg Sm ribonucleoproteins and MHCs with aaTRs
DOI: 10.5281/zenodo.6564994
title: Benchmarks and scripts for ACQuA and RSAComb

description: This dataset contains a selection of ontologies, data and queries (LUBM, UOBM and Reactome) used for testing the tools RSAComb [1] and ACQuA [2]. In addition, we provide a collection of scripts to generate queries from ontology patterns. The output of these scripts run on the Oxford Ontology Repository [3] is attached, as well. [1] https://doi.org/10.5281/zenodo.5047810<br> [2] https://doi.org/10.5281/zenodo.6564387<br> [3] https://www.cs.ox.ac.uk/isg/ontologies/
DOI: 10.5281/zenodo.6565004
title: Hydrogen atom recombination on Pt(111) and Pt(332)

description: Experimantal transient rates of HD formation, Molecular beam parameters, Experimental isotopic branching, Experimental H+H rate constants, Modeled dissociative adsorption and recombinative desorption rate constants, Coverage dependent adsorption energy, Quantum mechanical entropy of H-atoms at 598K.
DOI: 10.5281/zenodo.6565003
title: Hydrogen atom recombination on Pt(111) and Pt(332)

description: Experimantal transient rates of HD formation, Molecular beam parameters, Experimental isotopic branching, Experimental H+H rate constants, Modeled dissociative adsorption and recombinative desorption rate constants, Coverage dependent adsorption energy, Quantum mechanical entropy of H-atoms at 598K.
DOI: 10.18739/a2bv79x0c
title: Gaseous elemental mercury concentrations measured in the University of Colorado container during the 2019-2020 MOSAiC (Multidisciplinary drifting Observatory for the Study of Arctic Climate) expedition

description: This dataset contains gaseous elemental mercury (Hg(0)) concentrations measured in the Central Arctic during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. The backbone of MOSAiC was the year-round operation of the Research Vessel Polarstern that drifted with the sea ice across the Central Arctic from October 2019 to September 2020. Measurements were performed onboard Polarstern in the University of Colorado sea-laboratory container installed below deck in the forward cargo hold. A ~50 meter (m) long Teflon sampling line was deployed from the container to the bow crane to allow measurements forward of the vessel. This dataset is an archive of 30-minute averaged Hg(0) concentrations.
DOI: 10.6084/m9.figshare.19524937
title: Data and R-Code for: Capture order across social bathyergids indicate similarities in behavioural and spatial organisation

description: Data & code underlying the manuscript (info below):<br>It include capture order data from 4 species of mole-rats and the R-script for the analyses constituting the paper.<br><br><b>Capture order across social <i>bathyergids</i> indicate similarities in behavioural and spatial organisation</b><b>Markus Zöttl<sup>1</sup>, Hanna M. Bensch<sup>1</sup>, Kyle T. Finn<sup>2</sup>, Daniel W. Hart<sup>2</sup>, Jack Thorley<sup>3</sup>, Nigel C Bennett<sup>2</sup>, Stan Braude<sup>4</sup></b> <sup>1</sup>Department of Biology and Environmental Science, Linnaeus University, Kalmar, Sweden <sup>2</sup>Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa <sup>3</sup>Department of Earth, Ocean and Ecological Sciences, University of Liverpool, Liverpool, UK <sup>4</sup>Biology Department, Washington University in St. Louis, USA Correspondence: Corresponding author Markus.zottl@lnu.se<br><br><br>Summary:The social mole-rats of the family <i>Bathyergidae</i> show elaborate social organisation, that may include division of labour between breeders and non-breeders and across non-breeders within their groups. However, comparative behavioural data across the taxa are rare and contrasts and similarities between species are poorly understood. Field studies of social <i>bathyergids</i> usually involve capturing all group members until the entire group is captured. Because each animal is only captured once and traps are typically placed in close proximity to active foraging areas, the order in which animals are captured provides an indication of the foraging activity of different individuals and of the spatial organisation of the group within the burrow system. Here, we compare the association of capture order with breeding status, sex and body mass in four species and subspecies of social <i>bathyergids</i>, which vary in group size and represent all three social genera within the family <i>Bathyergidae</i>. We show that in naked and Damaraland mole-rats (<i>Heterocephalus glaber</i> and <i>Fukomys damarensis</i>), male and female breeders are captured later than non-breeders, whereas in two different subspecies of the genus <i>Cryptomys</i> only female breeders are captured later than non-breeders. The effect sizes vary largely and are 10 times stronger in naked mole-rats as compared to <i>Fukomys</i> and 3-4 times stronger than in <i>Cryptomys</i>. Among non-breeders, sex effects are notably absent in all species and body mass predicted capture order in both naked and Damaraland mole-rats. In naked mole-rats, larger non-breeders were captured earlier than smaller ones, whereas in Damaraland mole-rats intermediate-sized non-breeders were captured first. Our data suggest that there are similarities in behavioural structure and spatial organisation across all social <i>bathyergid</i> species, though the most pronounced differences within groups are found in naked mole-rats.<br><br> <br> <br>
DOI: 10.6084/m9.figshare.19524937.v1
title: Data and R-Code for: Capture order across social bathyergids indicate similarities in behavioural and spatial organisation

description: Data & code underlying the manuscript (info below):<br>It include capture order data from 4 species of mole-rats and the R-script for the analyses constituting the paper.<br><br><b>Capture order across social <i>bathyergids</i> indicate similarities in behavioural and spatial organisation</b><b>Markus Zöttl<sup>1</sup>, Hanna M. Bensch<sup>1</sup>, Kyle T. Finn<sup>2</sup>, Daniel W. Hart<sup>2</sup>, Jack Thorley<sup>3</sup>, Nigel C Bennett<sup>2</sup>, Stan Braude<sup>4</sup></b> <sup>1</sup>Department of Biology and Environmental Science, Linnaeus University, Kalmar, Sweden <sup>2</sup>Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa <sup>3</sup>Department of Earth, Ocean and Ecological Sciences, University of Liverpool, Liverpool, UK <sup>4</sup>Biology Department, Washington University in St. Louis, USA Correspondence: Corresponding author Markus.zottl@lnu.se<br><br><br>Summary:The social mole-rats of the family <i>Bathyergidae</i> show elaborate social organisation, that may include division of labour between breeders and non-breeders and across non-breeders within their groups. However, comparative behavioural data across the taxa are rare and contrasts and similarities between species are poorly understood. Field studies of social <i>bathyergids</i> usually involve capturing all group members until the entire group is captured. Because each animal is only captured once and traps are typically placed in close proximity to active foraging areas, the order in which animals are captured provides an indication of the foraging activity of different individuals and of the spatial organisation of the group within the burrow system. Here, we compare the association of capture order with breeding status, sex and body mass in four species and subspecies of social <i>bathyergids</i>, which vary in group size and represent all three social genera within the family <i>Bathyergidae</i>. We show that in naked and Damaraland mole-rats (<i>Heterocephalus glaber</i> and <i>Fukomys damarensis</i>), male and female breeders are captured later than non-breeders, whereas in two different subspecies of the genus <i>Cryptomys</i> only female breeders are captured later than non-breeders. The effect sizes vary largely and are 10 times stronger in naked mole-rats as compared to <i>Fukomys</i> and 3-4 times stronger than in <i>Cryptomys</i>. Among non-breeders, sex effects are notably absent in all species and body mass predicted capture order in both naked and Damaraland mole-rats. In naked mole-rats, larger non-breeders were captured earlier than smaller ones, whereas in Damaraland mole-rats intermediate-sized non-breeders were captured first. Our data suggest that there are similarities in behavioural structure and spatial organisation across all social <i>bathyergid</i> species, though the most pronounced differences within groups are found in naked mole-rats.<br><br> <br> <br>
DOI: 10.18739/a2736m36b
title: Ambient air ozone mole fractions measured in the University of Colorado container during the 2019-2020 MOSAiC (Multidisciplinary drifting Observatory for the Study of Arctic Climate) expedition

description: This dataset contains ambient air ozone mole fractions measured in the Central Arctic during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. The backbone of MOSAiC was the year-round operation of the Research Vessel Polarstern that drifted with the sea ice across the Central Arctic from October 2019 to September 2020. Measurements were performed onboard Polarstern in the University of Colorado sea-laboratory container installed below deck in the forward cargo hold. A ~50 meter (m) long Teflon sampling line was deployed from the container to the bow crane to allow measurements forward of the vessel. This dataset is an archive of minute-averaged ozone mole fractions.
DOI: 10.6084/m9.figshare.19799386
title: A preliminary study of intensive transgender-specific cultural competency training: Implications for social workers and psychologists who work with rural transgender clients

description: Pre- and post-test outcome measures of a revised version of the Competency Assessment Tool for LGBT Clients (LGBT-CAT) and the Gender Identity Counselor Competency Scale-Revised were administered. E=experimental (trans-specific training condition) and C=control (general multicultural training condition).
DOI: 10.6084/m9.figshare.19799386.v1
title: A preliminary study of intensive transgender-specific cultural competency training: Implications for social workers and psychologists who work with rural transgender clients

description: Pre- and post-test outcome measures of a revised version of the Competency Assessment Tool for LGBT Clients (LGBT-CAT) and the Gender Identity Counselor Competency Scale-Revised were administered. E=experimental (trans-specific training condition) and C=control (general multicultural training condition).
DOI: 10.34848/pkgrwh/h6dzah
title: Zonas Futuro Diciembre 2021 20122021.tab

description: :unav
DOI: 10.25345/c5pr7mz2x
title: MassIVE MSV000089497 - GNPS - Bacillus subtilis zone of inhibition
title: Bacillus subtilis zone of inhibition on agar containing Staphylococcus aureus. LC-MS/MS was performed in an UltiMate 3000 UPLC system (Thermo Scientific) using a Kinetex 1.7 um C18 reversed phase UHPLC column (50 X 2.1 mm) and Maxis Impact Q-TOF mass spectrometer (Bruker Daltonics) equipped with ESI source. Data was acquired in positive ion mode.
DOI: 10.3886/e149961v1-118662
title: CMS Doctors and Clinicians Data, 2014-2021

description: This deposit contains the Centers for Medicare & Medicaid Services’ (CMS) official data on doctors, clinicians, and groups listed on Medicare Care Compare.<br>The files in this deposit were downloaded from the CMS website and archived by Michael Darisse, Cornell University. Additional information edited by Michael Darisse and Lars Vilhuber, Cornell University and American Economic Association.<br><br><br><br>
DOI: 10.5281/zenodo.6565084
title: Kings and Anderson Lakes invertebrate Data

description: These are aquatic invertebrate samples taken pre and post rotenone treatment to remove a population of invasive northern pike. Pre-treatment samples were taken in August 2020. The rotenone project occurred October 2020. Post-treatment samples were taken August 2021.
DOI: 10.5281/zenodo.6565083
title: Kings and Anderson Lakes invertebrate Data

description: These are aquatic invertebrate samples taken pre and post rotenone treatment to remove a population of invasive northern pike. Pre-treatment samples were taken in August 2020. The rotenone project occurred October 2020. Post-treatment samples were taken August 2021.
DOI: 10.5281/zenodo.6565090
title: Kings and Anderson Lakes water quality

description: These are data of various water quality parameters measured thought the water column at 1m intervals for both Kings and Anderson Lakes.
DOI: 10.5281/zenodo.6565089
title: Kings and Anderson Lakes water quality

description: These are data of various water quality parameters measured thought the water column at 1m intervals for both Kings and Anderson Lakes.
DOI: 10.13020/qwp0-1824
title: Supporting data for The fluorescence-activating and absorption-shifting tag (FAST) enables live-cell fluorescence imaging of Methanococcus maripaludis
DOI: 10.21227/wc3q-jz97
title: CMU-SynTraffic-2022

description: Anonymous network traffic is more pervasive than ever due to the accessibility of services such as virtual private networks (VPN) and The Onion Router (Tor). To address the need to identify and classify this traffic, machine and deep learning solutions have become the standard. However, high-performing classifiers often scale poorly when applied to real-world traffic classification due to the heavily skewed nature of network traffic data. Prior research has found synthetic data generation to be effective at alleviating concerns surrounding class imbalance, though a limited number of these techniques have been applied to the domain of anonymous traffic detection. A CTGAN, CopulaGAN, VAE, and SMOTE were utilized to create viable synthetic anonymous network traffic samples. Ultimately, we amalgamate the data generated by the GANs, VAE, SMOTE, and real traffic from the CIC-Darknet2020 dataset into a comprehensive dataset, CMU-SynTraffic-2022, for future research on synthetic data and anonymous network traffic.
DOI: 10.5281/zenodo.6565095
title: Rayleigh wave H/V and phase velocity measurements of "3D Shear Wave Velocity Model of Salt Lake Valley via Rayleigh Wave Ellipticity Across a Temporary Geophone Array"

description: This file includes Rayleigh wave H/V and phase velocity measurements of the paper "3D Shear Wave Velocity Model of Salt Lake Valley via Rayleigh Wave Ellipticity Across a Temporary Geophone Array" in journal The Seismic Record by Qicheng Zeng, Fan-Chi Lin, and Amir A. Allam. Detailed desciption in README in the zip file.
DOI: 10.5281/zenodo.6565094
title: Rayleigh wave H/V and phase velocity measurements of "3D Shear Wave Velocity Model of Salt Lake Valley via Rayleigh Wave Ellipticity Across a Temporary Geophone Array"

description: This file includes Rayleigh wave H/V and phase velocity measurements of the paper "3D Shear Wave Velocity Model of Salt Lake Valley via Rayleigh Wave Ellipticity Across a Temporary Geophone Array" in journal The Seismic Record by Qicheng Zeng, Fan-Chi Lin, and Amir A. Allam. Detailed desciption in README in the zip file.
DOI: 10.26180/19799458
title: Supplementary Tables

description: <strong>Supplementary Table S1.</strong> Museum registration and locality data for specimens used in this study. <strong>Supplementary Table S2. </strong>Pairwise uncorrected genetic distances. <strong>Supplementary Table S3. </strong>Seventeen meristic and metric characters of type specimens.
DOI: 10.26180/19799458.v1
title: Supplementary Tables

description: <strong>Supplementary Table S1.</strong> Museum registration and locality data for specimens used in this study. <strong>Supplementary Table S2. </strong>Pairwise uncorrected genetic distances. <strong>Supplementary Table S3. </strong>Seventeen meristic and metric characters of type specimens.
DOI: 10.5517/ccdc.csd.cc27fwj3
title: CCDC 2068925: Experimental Crystal Structure Determination

description: Related Article: T. H. Borchers, F. Topić, J.-C. Christopherson, O. S. Bushuyev, J. Vainauskas, H. M. Titi, T. Friščić, C. J. Barrett|2022|Nature Chemistry|14|574|doi:10.1038/s41557-022-00909-0
DOI: 10.5517/ccdc.csd.cc27fwk4
title: CCDC 2068926: Experimental Crystal Structure Determination

description: Related Article: T. H. Borchers, F. Topić, J.-C. Christopherson, O. S. Bushuyev, J. Vainauskas, H. M. Titi, T. Friščić, C. J. Barrett|2022|Nature Chemistry|14|574|doi:10.1038/s41557-022-00909-0
DOI: 10.5517/ccdc.csd.cc27fwl5
title: CCDC 2068927: Experimental Crystal Structure Determination

description: Related Article: T. H. Borchers, F. Topić, J.-C. Christopherson, O. S. Bushuyev, J. Vainauskas, H. M. Titi, T. Friščić, C. J. Barrett|2022|Nature Chemistry|14|574|doi:10.1038/s41557-022-00909-0
DOI: 10.5517/ccdc.csd.cc27hh4d
title: CCDC 2070463: Experimental Crystal Structure Determination

description: Related Article: Ning-Yu Huang, Jian-Qiang Shen, Xue-Wen Zhang, Pei-Qin Liao, Jie-Peng Zhang, Xiao-Ming Chen|2022|J.Am.Chem.Soc.|144|8676|doi:10.1021/jacs.2c01640
DOI: 10.5517/ccdc.csd.cc2855d1
title: CCDC 2090342: Experimental Crystal Structure Determination

description: Related Article: Lisa Honold, Melanie Austrup, Andreas Faust, Christian Paul Konken, Katrin Schwegmann, Bastian Zinnhardt, Constantin Gabriel Daniliuc, Günter Haufe, Michael Schäfers, Klaus Kopka, Sven Hermann|2021|Mol. Imaging Biol.|24|434|doi:10.1007/s11307-021-01668-z
DOI: 10.5517/ccdc.csd.cc2989kg
title: CCDC 2123145: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989lh
title: CCDC 2123146: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989mj
title: CCDC 2123147: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989pl
title: CCDC 2123149: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989qm
title: CCDC 2123150: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989rn
title: CCDC 2123151: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989sp
title: CCDC 2123152: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989tq
title: CCDC 2123153: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989vr
title: CCDC 2123154: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891
DOI: 10.5517/ccdc.csd.cc2989ws
title: CCDC 2123155: Experimental Crystal Structure Determination

description: Related Article: Hyeonglim Seo, Moritz K. Jackl, Mark Kalaj, Seth M. Cohen|2022|Inorg.Chem.|61|7631|doi:10.1021/acs.inorgchem.2c00891