cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11626566
title: MOESM1 of Full moonlight-induced circadian clock entrainment in Coffea arabica

description: Additional file 1: Table S0. REPLICATES. Table S1. Genes differentially expressed between Full moon and new Moon at ZT0. Table S2. Genes differentially expressed between Full moon and new Moon at ZT3. Table S3. Genes differentially expressed between Full moon and new Moon at ZT6. Table S4. Genes differentially expressed between Full moon and new Moon at ZT9. Table S5. Genes differentially expressed between Full moon and new Moon at ZT12. Table S6. Genes differentially expressed between Full moon and new Moon at ZT15. Table S7. Genes differentially expressed between Full moon and new Moon at ZT18. Table S8. Genes differentially expressed between Full moon and new Moon at ZT21. Table S9. Genes differentially expressed between Full moon and new Moon at ZT24. Figure S10. Rhythmic genes in common between Coffee and Arabidopsis thaliana. Figure S11. Pairwise phase plots of the core clock genes. Figure S12. Number of genes per phase under new moon and the full moon. Table S13. Correlation matrix between Redox homeostasis genes and LHY. Table S14. Correlation matrix between genes involved in lipids pathways and LHY. Table S14. Primers used for genes studied by qRT-PCR. Figure S16. RT-QPCR of LHY gene during new moon. Figure S17. RT-QPCR time-course of core clock genes, POR1A and GWD1.
DOI: 10.6084/m9.figshare.11626566.v1
title: MOESM1 of Full moonlight-induced circadian clock entrainment in Coffea arabica

description: Additional file 1: Table S0. REPLICATES. Table S1. Genes differentially expressed between Full moon and new Moon at ZT0. Table S2. Genes differentially expressed between Full moon and new Moon at ZT3. Table S3. Genes differentially expressed between Full moon and new Moon at ZT6. Table S4. Genes differentially expressed between Full moon and new Moon at ZT9. Table S5. Genes differentially expressed between Full moon and new Moon at ZT12. Table S6. Genes differentially expressed between Full moon and new Moon at ZT15. Table S7. Genes differentially expressed between Full moon and new Moon at ZT18. Table S8. Genes differentially expressed between Full moon and new Moon at ZT21. Table S9. Genes differentially expressed between Full moon and new Moon at ZT24. Figure S10. Rhythmic genes in common between Coffee and Arabidopsis thaliana. Figure S11. Pairwise phase plots of the core clock genes. Figure S12. Number of genes per phase under new moon and the full moon. Table S13. Correlation matrix between Redox homeostasis genes and LHY. Table S14. Correlation matrix between genes involved in lipids pathways and LHY. Table S14. Primers used for genes studied by qRT-PCR. Figure S16. RT-QPCR of LHY gene during new moon. Figure S17. RT-QPCR time-course of core clock genes, POR1A and GWD1.
DOI: 10.6084/m9.figshare.11626461
title: MOESM5 of Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta)

description: Additional file 5: Table S2. List of all transcripts in time points 0 vs. 1, 0 vs.3, 0 vs. 5, their differential expression and the encoded protein.
DOI: 10.6084/m9.figshare.11626461.v1
title: MOESM5 of Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta)

description: Additional file 5: Table S2. List of all transcripts in time points 0 vs. 1, 0 vs.3, 0 vs. 5, their differential expression and the encoded protein.
DOI: 10.6084/m9.figshare.11626431
title: MOESM5 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 5: Table S3. Motif clusters associated with SMCHD1 genomic occupancy.
DOI: 10.6084/m9.figshare.11626434
title: MOESM6 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 6: Table S4.Â List of Primers.
DOI: 10.6084/m9.figshare.11626431.v1
title: MOESM5 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 5: Table S3. Motif clusters associated with SMCHD1 genomic occupancy.
DOI: 10.6084/m9.figshare.11626434.v1
title: MOESM6 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 6: Table S4.Â List of Primers.
DOI: 10.6084/m9.figshare.11626425
title: MOESM3 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 3: Table S1. Genes associated with SMCHD1 genomic occupancy.
DOI: 10.6084/m9.figshare.11626428
title: MOESM4 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 4: Table S2. Ontology analysis of genes associated withÂ SMCHD1 genomic occupancy.
DOI: 10.6084/m9.figshare.11626425.v1
title: MOESM3 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 3: Table S1. Genes associated with SMCHD1 genomic occupancy.
DOI: 10.6084/m9.figshare.11626428.v1
title: MOESM4 of The effects of the DNA Demethylating reagent, 5-azacytidine on SMCHD1 genomic localization

description: Additional file 4: Table S2. Ontology analysis of genes associated withÂ SMCHD1 genomic occupancy.
DOI: 10.6084/m9.figshare.11626377
title: MOESM3 of Transcriptomic profiling disclosed the role of DNA methylation and histone modifications in tumor-infiltrating myeloid-derived suppressor cell subsets in colorectal cancer

description: Additional file 3: Table S2.: DAVID analysis
DOI: 10.6084/m9.figshare.11626377.v1
title: MOESM3 of Transcriptomic profiling disclosed the role of DNA methylation and histone modifications in tumor-infiltrating myeloid-derived suppressor cell subsets in colorectal cancer

description: Additional file 3: Table S2.: DAVID analysis
DOI: 10.6084/m9.figshare.11626368
title: MOESM2 of Transcriptomic profiling disclosed the role of DNA methylation and histone modifications in tumor-infiltrating myeloid-derived suppressor cell subsets in colorectal cancer

description: Additional file 2: Table S1. Gene cluster analysis.
DOI: 10.6084/m9.figshare.11626341
title: MOESM2 of Release of coarse woody detritus-related carbon: a synthesis across forest biomes

description: Additional file 2. Spreadsheet containing data used in analysis of decomposition rate-constants.
DOI: 10.6084/m9.figshare.11626341.v1
title: MOESM2 of Release of coarse woody detritus-related carbon: a synthesis across forest biomes

description: Additional file 2. Spreadsheet containing data used in analysis of decomposition rate-constants.
DOI: 10.6084/m9.figshare.11626296
title: Shapefiles_for_Carmichael_Mine_Map.zip

description: Shape files to produce map of Carmichael mine and nearby Doongmabulla Spring Complex
DOI: 10.6084/m9.figshare.11626296.v1
title: Shapefiles_for_Carmichael_Mine_Map.zip

description: Shape files to produce map of Carmichael mine and nearby Doongmabulla Spring Complex
DOI: 10.6084/m9.figshare.11626125
title: Raw Data.zip

description: <b>H</b><b>yaluronic acid </b><b>ameliorates the proliferative ability</b><b> </b><b>of </b><b>human amniotic epithelial cells </b><b>through activation of </b><b>TGF-β/BMP signaling</b><b></b>
DOI: 10.6084/m9.figshare.11626116
title: GBDT_results_predict_Test_xy_0111_20.csv

description: This is a csv file for the GBDT test result
DOI: 10.6084/m9.figshare.11626116.v1
title: GBDT_results_predict_Test_xy_0111_20.csv

description: This is a csv file for the GBDT test result
DOI: 10.6084/m9.figshare.11626086
title: sudo_lu_new_sample_0514_19.csv

description: This is input data set with csv format
DOI: 10.6084/m9.figshare.11626053
title: Data for Shen G-Cubed

description: The dataset enclosed the details of geochronological and thermochronological works, including the analytical procedures (Text S1) and initial dataset (Table S1 and Appendix A1). The data used for the QTQt modeling and the prediction results for individual samples were also presented (Table S2 and Appendix A2).
DOI: 10.6084/m9.figshare.11626086.v1
title: sudo_lu_new_sample_0514_19.csv

description: This is input data set with csv format
DOI: 10.6084/m9.figshare.11626053.v1
title: Data for Shen G-Cubed

description: The dataset enclosed the details of geochronological and thermochronological works, including the analytical procedures (Text S1) and initial dataset (Table S1 and Appendix A1). The data used for the QTQt modeling and the prediction results for individual samples were also presented (Table S2 and Appendix A2).
DOI: 10.6084/m9.figshare.11626020
title: Data_Tables_JGR2020.xlsx

description: Data for the manuscript entitled "Silicon-depleted present-day Earth’s outer core revealed by sound velocity measurements of liquid Fe-Si alloy" by Nakajima and others.
DOI: 10.6084/m9.figshare.11626014
title: IDC_Tamai et al_Identification of circadian clock modulators from existing drugs

description: The dataset was generated from a cell-based, high-throughput chemical screen. Triplicate wells of human U2OS cells were treated with compounds from the International Drug Collection at a concentration of 1 uM or 10 uM. Substances contained in all the wells, including blanks, are listed in the Excel file along with the effect of the drug/DMSO control on circadian period. The change in circadian period compared to the DMSO control is plotted in the graphs. Drugs that killed the cells were not included in the final figure of the paper. Another file containing the screening of FDA-approved compounds has been uploaded separately.
DOI: 10.6084/m9.figshare.11626014.v2
title: IDC_Tamai et al_Identification of circadian clock modulators from existing drugs

description: The dataset was generated from a cell-based, high-throughput chemical screen. Triplicate wells of human U2OS cells were treated with compounds from the International Drug Collection at a concentration of 1 uM or 10 uM. Substances contained in all the wells, including blanks, are listed in the Excel file along with the effect of the drug/DMSO control on circadian period. The change in circadian period compared to the DMSO control is plotted in the graphs. Drugs that killed the cells were not included in the final figure of the paper. Another file containing the screening of FDA-approved compounds has been uploaded separately.
DOI: 10.6084/m9.figshare.11626014.v1
title: IDC_Tamai et al_Identification of circadian clock modulators

description: The dataset was generated from a cell-based, high-throughput chemical screen. Triplicate wells of human U2OS cells were treated with compounds from the International Drug Collection at a concentration of 1 uM or 10 uM. Substances contained in all the wells, including blanks, are listed in the Excel file along with the effect of the drug/DMSO control on circadian period. The change in circadian period compared to the DMSO control is plotted in the graphs. Drugs that killed the cells were not included in the final figure of the paper. Another file containing the screening of FDA-approved compounds has been uploaded separately.
DOI: 10.6084/m9.figshare.11625987
title: 2019 01 03 Field Notes

description: Field notes including image and/or video records.<br>Project order 90a.
DOI: 10.6084/m9.figshare.11625987.v1
title: 2019 01 03 Field Notes

description: Field notes including image and/or video records.<br>Project order 90a.
DOI: 10.6084/m9.figshare.11625930
title: TW Hya dust and gas radiative transfer models with MCFOST

description: Radiative transfer data from TW Hya dust and gas hydrodynamical models with Phantom, post-processed with MCFOST. Related to the publication Mentiplay, Price, and Pinte (2019) "Super-Earths in the TW Hya disc"; for more details, see: https://doi.org/10.1093/mnrasl/sly209.<br>The data format is gzipped FITS files (.fits.gz) and MCFOST parameter files (.para) which are text files. For more details on MCFOST, see: https://doi.org/10.1051/0004-6361:20053275 and https://doi.org/10.1051/0004-6361/200811555.<br>There are 7 models. 3 dust-gas models with varying inner planet masses: 4, 8, and 16 Earth masses with a fixed outer mass planet. And 4 gas only models with varying outer planet mass: 0.1, 0.3, 1.0, and 2.0 Jupiter masses with fixed inner planet masses.<br>The 3 dust-gas models have two dust species: 0.1 mm and 1 mm. They are each generated from combining two separate single dust grain species calculations by adding the 1 mm dust to the 0.1 mm dust calculation.<br>The dust-gas models have 870 micron dust thermal emission directly from MCFOST and with post-processing with the CASA ALMA simulator.<br>The gas-only models have 1.6 micron scattered light and CO J=3-2 molecular emission.
DOI: 10.6084/m9.figshare.11625912
title: CA04_LEISA_wavelengths.dat

description: Wavelengths (lambda) associated with the planes in the CA04 LEISA cube.<br>
DOI: 10.6084/m9.figshare.11625930.v1
title: TW Hya dust and gas radiative transfer models with MCFOST

description: Radiative transfer data from TW Hya dust and gas hydrodynamical models with Phantom, post-processed with MCFOST. Related to the publication Mentiplay, Price, and Pinte (2019) "Super-Earths in the TW Hya disc"; for more details, see: https://doi.org/10.1093/mnrasl/sly209.<br>The data format is gzipped FITS files (.fits.gz) and MCFOST parameter files (.para) which are text files. For more details on MCFOST, see: https://doi.org/10.1051/0004-6361:20053275 and https://doi.org/10.1051/0004-6361/200811555.<br>There are 7 models. 3 dust-gas models with varying inner planet masses: 4, 8, and 16 Earth masses with a fixed outer mass planet. And 4 gas only models with varying outer planet mass: 0.1, 0.3, 1.0, and 2.0 Jupiter masses with fixed inner planet masses.<br>The 3 dust-gas models have two dust species: 0.1 mm and 1 mm. They are each generated from combining two separate single dust grain species calculations by adding the 1 mm dust to the 0.1 mm dust calculation.<br>The dust-gas models have 870 micron dust thermal emission directly from MCFOST and with post-processing with the CASA ALMA simulator.<br>The gas-only models have 1.6 micron scattered light and CO J=3-2 molecular emission.
DOI: 10.6084/m9.figshare.11625909
title: CA04_LEISA_cube.fits

description: The CA04 LEISA observation as a cube of (x,y,lambda).<br>
DOI: 10.6084/m9.figshare.11625906
title: shape_vertices.txt

description: (x,y,z) locations of the vertices of the low-poly Arrokoth shape model in km, relative to the center of mass.<br>
DOI: 10.6084/m9.figshare.11625909.v1
title: CA04_LEISA_cube.fits

description: The CA04 LEISA observation as a cube of (x,y,lambda).<br>
DOI: 10.6084/m9.figshare.11625888
title: Table S2. Read Counts

description: Table S2. The number of filtered sequencing reads associated with each individual/locus combination.
DOI: 10.6084/m9.figshare.11625882
title: thermal_models_temperatures_emis100.dat

description: Temperature averaged over the face of Arrokoth observed during the CA08 REX scan as a function of depth for emissivity 1.0.<br>
DOI: 10.6084/m9.figshare.11625882.v1
title: thermal_models_temperatures_emis100.dat

description: Temperature averaged over the face of Arrokoth observed during the CA08 REX scan as a function of depth for emissivity 1.0.<br>
DOI: 10.6084/m9.figshare.11625888.v1
title: Table S2. Read Counts

description: Table S2. The number of filtered sequencing reads associated with each individual/locus combination.
DOI: 10.25919/5f45d801827d6
title: Data files from the Parkes UWL receiver system for PSR J1803-3002A in NGC 6522

description: This collection contains data files from the Ultra-Wideband Low (UWL) receiver system of the Parkes radio telescope for the pulsar PSR J1803−3002A, which is within the globular cluster NGC 6522. This data collection contains (1) the integrated profiles for each of the observations and the same after flagging the radio frequency interference (with the file extension .zap and .calib_zap), and (2) the timing model file of PSR J1803−3002A (with the file extension .par).
DOI: 10.6084/m9.figshare.11625876
title: thermal_models_temperatures_emis95.dat

description: Temperature averaged over the face of Arrokoth observed during the CA08 REX scan as a function of depth for emissivity 0.95.<br>
DOI: 10.6084/m9.figshare.11625879
title: thermal_models_thermal_inertias.dat

description: Thermal inertias corresponding to the columns in the thermal_model_temperatures files.<br>
DOI: 10.6084/m9.figshare.11625876.v1
title: thermal_models_temperatures_emis95.dat

description: Temperature averaged over the face of Arrokoth observed during the CA08 REX scan as a function of depth for emissivity 0.95.<br>
DOI: 10.6084/m9.figshare.11625879.v1
title: thermal_models_thermal_inertias.dat

description: Thermal inertias corresponding to the columns in the thermal_model_temperatures files.<br>
DOI: 10.6084/m9.figshare.11625867
title: thermal_model_output.txt

description: Parameters associated with facets of the shape model with vertices described by shape_vertices.txt<br>As a function of column:1:3 = indices of the vertices comprising this facet (integer reference to list in 'shape_vertices.txt')4 = Surface Temperature at time of flyby (K): Figure 7D-E5 = orbitally averaged total received radiation (insolation plus surface reradiation in W/m^2): Figure 7A6 = orbitally averaged total received self-radiation (W/m^2): Figure 7B7 = orbitally averaged increase of local temperature due to self-reradiation (K): Figure 7C<br>
DOI: 10.6084/m9.figshare.11625867.v1
title: thermal_model_output.txt

description: Parameters associated with facets of the shape model with vertices described by shape_vertices.txt<br>As a function of column:1:3 = indices of the vertices comprising this facet (integer reference to list in 'shape_vertices.txt')4 = Surface Temperature at time of flyby (K): Figure 7D-E5 = orbitally averaged total received radiation (insolation plus surface reradiation in W/m^2): Figure 7A6 = orbitally averaged total received self-radiation (W/m^2): Figure 7B7 = orbitally averaged increase of local temperature due to self-reradiation (K): Figure 7C<br>
DOI: 10.6084/m9.figshare.11625870
title: thermal_models_temperatures_emis90.dat

description: Temperature averaged over the face of Arrokoth observed during the CA08 REX scan as a function of depth for emissivity 0.9.<br>
DOI: 10.6084/m9.figshare.11625864
title: thermal_models_depths.dat

description: Depths in cm corresponding to the lines in the thermal_models_temperature files.<br>
DOI: 10.6084/m9.figshare.11625870.v1
title: thermal_models_temperatures_emis90.dat

description: Temperature averaged over the face of Arrokoth observed during the CA08 REX scan as a function of depth for emissivity 0.9.<br>
DOI: 10.6084/m9.figshare.11625864.v1
title: thermal_models_depths.dat

description: Depths in cm corresponding to the lines in the thermal_models_temperature files.<br>
DOI: 10.6084/m9.figshare.11625852
title: Lucanus_cervus

description: The data present a database of <i>Lucanus cervus</i> localities found in commercial forests in Poland. They were recorded in a survey conducted in state-owned commercial forests throughout Poland<br>
DOI: 10.6084/m9.figshare.11625861
title: Table S1: Sample Details

description: Table S1. Lab IDs (DWW#), field numbers, taxonomic assignments, and locality information for specimens used in this study. <br>
DOI: 10.6084/m9.figshare.11625852.v1
title: Lucanus_cervus

description: The data present a database of <i>Lucanus cervus</i> localities found in commercial forests in Poland. They were recorded in a survey conducted in state-owned commercial forests throughout Poland<br>
DOI: 10.6084/m9.figshare.11625861.v1
title: Table S1: Sample Details

description: Table S1. Lab IDs (DWW#), field numbers, taxonomic assignments, and locality information for specimens used in this study. <br>
DOI: 10.6084/m9.figshare.11625825
title: 17_Phase_Stability

description: Raw data for Phase stability in glucoseLCM for SAT competition-2017 benchmarks.
DOI: 10.6084/m9.figshare.11625825.v1
title: 17_Phase_Stability

description: Raw data for Phase stability in glucoseLCM for SAT competition-2017 benchmarks.
DOI: 10.6084/m9.figshare.11625816
title: CA08_REX_scans.dat

description: REX CA08 scans<br>
DOI: 10.6084/m9.figshare.11625819
title: CA05_MVIC_cube.fits

description: CA05 MVIC scan<br>
DOI: 10.6084/m9.figshare.11625816.v1
title: CA08_REX_scans.dat

description: REX CA08 scans<br>
DOI: 10.6084/m9.figshare.11625819.v1
title: CA05_MVIC_cube.fits

description: CA05 MVIC scan<br>
DOI: 10.17028/rd.lboro.11625807
title: WFG Sao Paulo

description: Energy simulation of Water-filled Glass (WFG) in Sao Paulo, Brazil.<br>
DOI: 10.17028/rd.lboro.11625810
title: WFG Tehran

description: Energy modelling of Water-filled Glass (WFG) for Tehran, Iran.<br>
DOI: 10.17028/rd.lboro.11625807.v1
title: WFG Sao Paulo

description: Energy simulation of Water-filled Glass (WFG) in Sao Paulo, Brazil.<br>
DOI: 10.17028/rd.lboro.11625807.v2
title: WFG Sao Paulo

description: Energy simulation of Water-filled Glass (WFG) in Sao Paulo, Brazil.<br>
DOI: 10.17028/rd.lboro.11625804
title: WFG Mannheim

description: Energy simulation of Water-filled Glass (WFG) for Mannheim, Germany.<br>
DOI: 10.17028/rd.lboro.11625810.v1
title: WFG Tehran

description: Energy modelling of Water-filled Glass (WFG) forTehran, Iran.<br>
DOI: 10.17028/rd.lboro.11625810.v3
title: WFG Tehran

description: Energy modelling of Water-filled Glass (WFG) for Tehran, Iran.<br>
DOI: 10.17028/rd.lboro.11625804.v2
title: WFG Mannheim

description: Energy simulation of Water-filled Glass (WFG) for Mannheim, Germany.<br>
DOI: 10.17028/rd.lboro.11625810.v2
title: WFG Tehran

description: Energy modelling of Water-filled Glass (WFG) for Tehran, Iran.<br>
DOI: 10.17028/rd.lboro.11625804.v1
title: WFG Mannheim

description: Energy simulation of Water-filled Glass (WFG) for Mannheim, Germany.<br>
DOI: 10.17028/rd.lboro.11625792
title: WFG Beijing

description: Energy simulation of Water-filled Glass (WFG) for Beijing.<br>
DOI: 10.6084/m9.figshare.11625780
title: SNPs identified in Adineta vaga individuals L1-L11

description: This dataset includes SNPs detected among 11 <i>A. vaga</i> individuals L1-L11 (SNP dataset I). SNPs were called with SAMtools/BCFtools (v.1.4.1) from alignments of HiSeq reads to the L1 haploid sub-assembly. File 'A.vaga.L1_L11.SNP.dataset.I.raw.vcf' contains raw variant calls (raw INDEL entries are also present). Filtered SNPs (stringent SNP dataset I) are contained in the file 'A.vaga.L1_L11.SNP.dataset.I.filtered.vcf'. Data are in the VCF format.
DOI: 10.17028/rd.lboro.11625792.v2
title: WFG Beijing

description: Energy simulation of Water-filled Glass (WFG) for Beijing.<br>
DOI: 10.6084/m9.figshare.11625780.v1
title: SNPs identified in A. vaga individuals L1-L11

description: This dataset includes SNPs detected among 11 <i>A. vaga</i> individuals L1-L11 (SNP dataset I). SNPs were called with SAMtools/BCFtools (v.1.4.1) from alignments of HiSeq reads to the L1 haploid sub-assembly. File 'A.vaga.L1_L11.SNP.dataset.I.raw.vcf' contains raw variant calls (raw INDEL entries are also present). Filtered SNPs (stringent SNP dataset I) are contained in the file 'A.vaga.L1_L11.SNP.dataset.I.filtered.vcf'. Data are in the VCF format.
DOI: 10.17028/rd.lboro.11625777
title: WFG Overall Simulation

description: Data set for energy simulation of Water-filled Glass (WFG) facade in 13 cities.<br>
DOI: 10.17028/rd.lboro.11625792.v1
title: WFG Beijing

description: Energy simulation of Water-filled Glass (WFG) for Beijing.<br>