cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7961605
title: Spatial transcriptomics of B and T cell receptors uncovers lymphocyte clonal dynamics.

description: This dataset contains a single zipped folder containing: data scripts needed to reproduce the manuscript entitled "Spatial transcriptomics of B and T cell receptors uncovers lymphocyte clonal dynamics". Each folder is organized by tissue type, methodology, and analysis. A readme file accompanies each folder with details on the files/scripts within that folder. Alongside the paper and supplementary materials, it should be possible to reproduce all the figures in the manuscript.
DOI: 10.5281/zenodo.7662315
title: Datasets of Radwin 2023 Great Salt Lake Remote Sensing Historical Assessment

description: Included are the culminated datasets for an article which is in the process of being submitted to the Utah Geological Association. This data helps an investigator reproduce or utilize the data. There are datasets for both Landsat and Sentinel, for both the North and South arms of the Great Salt Lake. Additionally, there are datasets documenting the NDWI threshold used for each Landsat image, the outlier images not used in analyses, NDWI error assessment, and calculation of stats/facts. Paper abstract: The Great Salt Lake has been rapidly shrinking since the highstand of the mid-1980’s, creating cause for concern in recent decades as the lake has reached historic lows. Many investigators have assessed the evolution of lake elevation, geochemistry, anthropogenic impacts, and links to climate and atmospheric processes, however, the use of remote sensing to study the evolution of the lake has been significantly limited. Harnessing recent advancements in cloud-processing, specifically, Google Earth Engine cloud computing, this study utilizes over 600 Landsat TM/OLI and Sentinel MSI satellite images from 1984-2023 to present time-series analyses of remotely sensed Great Salt Lake water area, shoreland area, surface cover types, and chlorophyll-a analyses paired with modelled estimates for water and shoreland area. Results show that since the highstand of 1986, the water area has declined by 50% (~2,400 km<sup>2</sup>) and the shoreland area has increased to ~2,600 km<sup>2</sup> from ~200 km<sup>2</sup>. The area of unconsolidated sediments not protected by vegetation or halite crusts has risen to ~2,200 km<sup>2</sup>. Significant halite crusts are observed in the North Arm, having a max extent of ~150 km<sup>2</sup> between 2002 and 2003, while only small extents of halite crusts are observed for the South Arm. Vegetation is more prevalent in the South Arm and its area has increased by over 400% since 1990. Gypsum is widely observed independent of halite crusts. The results highlight multiple instances of land-use that led to observable changes in water/shoreland area and halite crust extent. This study demonstrates the important benefits of maintaining a lake elevation above ~4,194 ft to maximize lake and halite crust area, which would help mitigate possible dust events and maintain broad lake extent.
DOI: 10.5281/zenodo.7662314
title: Datasets of Radwin 2023 Great Salt Lake Remote Sensing Historical Assessment

description: Included are the culminated datasets for an article in review to be published with the Utah Geological Association. This data helps an investigator reproduce or utilize the data. There are datasets for both Landsat and Sentinel, for both the North and South arms of the Great Salt Lake. Additionally, there are datasets documenting the NDWI threshold used for each Landsat image, the outlier images not used in analyses, NDWI error assessment, and calculation of stats/facts. Paper abstract: The Great Salt Lake has been rapidly shrinking since the highstand of the mid-1980s, creating cause for concern in recent decades as the lake has reached historic lows. Many investigators have assessed the evolution of lake elevation, geochemistry, anthropogenic impacts, and links to climate and atmospheric processes; however, the use of remote sensing to study the evolution of the lake has been significantly limited. Harnessing recent advancements in cloud-processing, specifically Google Earth Engine cloud computing, this study utilizes over 600 Landsat TM/OLI and Sentinel MSI satellite images from 1984-2023 to present time-series analyses of remotely sensed Great Salt Lake water area, exposed lakebed area, surface cover types, and chlorophyll-a analyses paired with modelled estimates for water and exposed lakebed area. Results show that since the highstand of 1986-1987, the water area has declined by 45% (~3,000 km<sup>2</sup>) and the exposed lakebed area has increased to ~3,500 km<sup>2</sup> from ~500 km<sup>2</sup>. The area of unconsolidated sediments not protected by vegetation or halite crusts has risen to ~2,400 km<sup>2</sup>. Significant halite crusts are observed in the North Arm, having a max extent of ~150 km<sup>2</sup> between 2002 and 2003, while only small extents of halite crusts are observed for the South Arm. Vegetation is more prevalent in the Bear River Bay and South Arm, with surface area increases over 400% since 1990. Gypsum is widely observed independent of halite crusts. The results highlight multiple instances of land-use/water-management that led to observable changes in water/exposed lakebed area and halite crust extent. This study demonstrates the important benefits of maintaining a lake elevation above ~4,194 ft to maximize lake and halite crust area, which would help mitigate possible dust events and maintain broad lake extent. Files should be self-explanatory based on filename, where BRB means Bear River Bay. Note there are two video files animating the evolution of the North and South Arms of the Great Salt Lake using satellite imagery from 1984 to 2023. Visit https://github.com/radwinskis for details on code used for this study. Please contact me at markradwin@gmail.com with any questions.
DOI: 10.5281/zenodo.7996314
title: Datasets of Radwin 2023 Great Salt Lake Remote Sensing Historical Assessment

description: Included are the culminated datasets for an article in review to be published with the Utah Geological Association. This data helps an investigator reproduce or utilize the data. There are datasets for both Landsat and Sentinel, for both the North and South arms of the Great Salt Lake. Additionally, there are datasets documenting the NDWI threshold used for each Landsat image, the outlier images not used in analyses, NDWI error assessment, and calculation of stats/facts. Paper abstract: The Great Salt Lake has been rapidly shrinking since the highstand of the mid-1980s, creating cause for concern in recent decades as the lake has reached historic lows. Many investigators have assessed the evolution of lake elevation, geochemistry, anthropogenic impacts, and links to climate and atmospheric processes; however, the use of remote sensing to study the evolution of the lake has been significantly limited. Harnessing recent advancements in cloud-processing, specifically Google Earth Engine cloud computing, this study utilizes over 600 Landsat TM/OLI and Sentinel MSI satellite images from 1984-2023 to present time-series analyses of remotely sensed Great Salt Lake water area, exposed lakebed area, surface cover types, and chlorophyll-a analyses paired with modelled estimates for water and exposed lakebed area. Results show that since the highstand of 1986-1987, the water area has declined by 45% (~3,000 km<sup>2</sup>) and the exposed lakebed area has increased to ~3,500 km<sup>2</sup> from ~500 km<sup>2</sup>. The area of unconsolidated sediments not protected by vegetation or halite crusts has risen to ~2,400 km<sup>2</sup>. Significant halite crusts are observed in the North Arm, having a max extent of ~150 km<sup>2</sup> between 2002 and 2003, while only small extents of halite crusts are observed for the South Arm. Vegetation is more prevalent in the Bear River Bay and South Arm, with surface area increases over 400% since 1990. Gypsum is widely observed independent of halite crusts. The results highlight multiple instances of land-use/water-management that led to observable changes in water/exposed lakebed area and halite crust extent. This study demonstrates the important benefits of maintaining a lake elevation above ~4,194 ft to maximize lake and halite crust area, which would help mitigate possible dust events and maintain broad lake extent. Files should be self-explanatory based on filename, where BRB means Bear River Bay. Note there are two video files animating the evolution of the North and South Arms of the Great Salt Lake using satellite imagery from 1984 to 2023. Visit https://github.com/radwinskis for details on code used for this study. Please contact me at markradwin@gmail.com with any questions.
DOI: 10.5066/p96mlcjd
title: Meteorological data from edge-of-field sites in Michigan and Wisconsin, 2015-18

description: These data describe daily mean air temperature, soil temperature, soil-water (moisture) content, and solar radiation at two edge-of-field sites monitored as part of the Great Lakes Restoration Initiative. These data were used to catalog the general range of conditions at each site in order to provide context for when sub-surface agricultural drainage (tile drains) is visible in remote-sensing imagery available from DigitalGlobe and Google Earth.
DOI: 10.5066/p99ezzjk
title: Geochemical and fallout radionuclide data for sediment source fingerprinting studies of the Loutsenhizer Arroyo and Sunflower Drain watersheds in western Colorado

description: This data release includes geochemical and fallout radionuclide data for suspended sediments and potential sediment source types for the Loutsenhizer Arroyo and Sunflower Drain watersheds in western Colorado. Suspended sediments were collected by passive samplers deployed in the stream channel of the watershed outlets during four study periods between August 2018 and August 2019. Potential sediment source type samples were collected in the watersheds in duplicate using compositing techniques that targeted the top 5 centimeters of soil. The four potential sediment source-types were: agricultural fields, rangeland, arroyo walls, and streambanks. Source type samples were wet sieved to less than (&amp;lt;) 63 microns (&amp;micro;m) to target the size fraction likely to be entrained in streamflow as suspended sediments. Geochemical analyses were conducted by AGAT Laboratories (Canada) and data are reported for concentrations of 42 elements along with total carbon, carbonate, and organic carbon. Selenium concentrations were measured by hydride generation atomic absorption spectroscopy. Fallout radionuclide analyses were conducted at the USGS St. Petersburg Coastal and Marine Science Center by gamma-ray spectrometry methods. Activity ratios for total lead-210 to radium-226 and ratios of radium-226 to uranium-238 are reported along with propagated uncertainty for the ratios.
DOI: 10.17632/9p4zfyjc27.1
title: A data report on the effect of terrain types on the windcatcher's performance 

description: Three-dimensional steady CFD simulations were conducted to produce the numerical raw data, including the ventilation performance indexes, to investigate the natural ventilation capability of a bidirectional windcatcher in the presence of the free wind stream disturbed by the different types of terrain. In order to produce the data, a step-by-step process was followed. The generated geometry of the building model along with its two-sided windcatcher (in Rhino) was imported into the Hexpress software to build up the computational grid and finally it was fed to ANSYS Fluent to run the simulations following the predefined numerical solution settings. The calculated simulations produced the flow field and temperature distribution inside the generic building exposed to the wind flow with a reference wind speed of 3.1 m/s at the reference height of 10 m (wind condition of the city of Nottingham, the UK). The effect of four various ground surface features (open, rough, suburban and urban areas) and two different thermal scenarios (outdoor temperatures of 21.5 ºC and 26 ºC) on the wind flow and indoor thermal conditions was studied. The reported numerical data contributes to future numerical and experimental investigations toward aerodynamic design improvements for the windcatchers.
DOI: 10.17632/ykbxhcpbh4.1
title: Medical Students Knowledge, Awareness and Perception of the role of physiotherapy in health care: A Survey Study

description: In these modern days, physiotherapy should be in the mind of all people because it can save them from many further disease and many irrelevant treatment and surgical methods. Awareness about physiotherapy is increasing day by day and it is very helpful for the patients.
DOI: 10.5066/p9e2jzcg
title: Microfossil, grain size, and petrographic data for the Cabin Branch and Cabin Creek (Cappy Avenue) outcrops, Prince George's County, Maryland

description: The Cabin Branch and Cabin Creek (Cappy Avenue) outcrops are located along two small creeks in Prince George&amp;rsquo;s County, Maryland. The Cabin Branch outcrop contains exposures of silty sands of the Upper Cretaceous Severn Formation, and both outcrops contain Paleocene silty quartz and glauconitic sands of the Danian Brightseat Formation and highly fossiliferous glauconitic quartz sands of the Selandian Aquia Formation. Data from these two locations were generated in order to designate a Principal Reference Section for the Danian age Brightseat Formation. The Cabin Branch outcrop consists of disjunct exposures along an approximately 0.4-mile section of the creek. At the nearby Cabin Creek (Cappy Avenue) outcrop a more complete Brightseat/Aquia contact is exposed. Data generated from these two outcrops include a complete suite of sand/silt/clay percent abundances from each sample of each formation. Additionally, data for the sand-size fraction from each formation were further broken down into percent abundance of very fine, fine, medium, and coarse components. Petrographic data for the indurated beds at the Cabin Branch outcrop are also included. Calcareous nannofossil data from the two outcrops are presented in three occurrence charts: one for the Late Cretaceous and one for the Paleocene at Cabin Branch, and one for the Brightseat-Aquia contact interval at Cabin Creek (Cappy Avenue). Calcareous nannofossil data were used to determine the ages and zonation of each formation, and species richness, a measure used to detail community stability, is also provided. In addition to calcareous nannofossil biostratigraphy, samples were processed for other calcareous microfossils: planktic and benthic foraminifera and ostracods. A table for each outcrop presents the number of planktic and benthic foraminifera per 300 specimens, along with the total number of ostracods present per sample. An occurrence chart of ostracod species is provided for both outcrops.
DOI: 10.5281/zenodo.6243249
title: The Font-Size Effect on Judgments of Learning: A Perceptual Contrast Account

description: The mean JOL magnitude and recall performance of the participants in Experiment 1 & 2.
DOI: 10.5281/zenodo.7263531
title: Perceptual Contrast Reduces the Judgments of Learning of Small-font Words Compared with No-contrast Conditions

description: The data and procedures in Experiment 1 & 2.
DOI: 10.5281/zenodo.7996149
title: Perceptual Contrast Reduces the JOLs of Small-font Words and Increases the JOLs of Large-font Words Compared with the No-contrast Conditions

description: The data and procedures in Experiment 1 & 2.
DOI: 10.5281/zenodo.6243248
title: Perceptual Contrast Reduces the JOLs of Small-font Words and Increases the JOLs of Large-font Words Compared with the No-contrast Conditions

description: The data and procedures in Experiment 1 & 2.
DOI: 10.5281/zenodo.4044523
title: Social-like responses are inducible in the asocial and blind Mexican cavefish despite the continued exhibition of strong repetitive behavior

description: Demo code and demo video files for the manuscript of "Social-like responses are inducible in the asocial and blind Mexican cavefish despite the continued exhibition of strong repetitive behavior." This zip file contains three folders, representing (1) ImageJ script for background subtraction; (2) python script to adjust swapped IDs in the result of idTracker analysis; and (3) MatLab script for detecting the social interactions
DOI: 10.5281/zenodo.7313504
title: Zeondo dataset for Probing the limits of the phonon quasi-particle picture: Transitions between underdamped and overdamped dynamics in CsPbBr3

description: Zeondo dataset for Probing the limits of the phonon quasi-particle picture: The transition from underdamped to overdamped dynamics in CsPbBr3
DOI: 10.5281/zenodo.7992136
title: Pure POPC membrane simulations with 790 mM CaCl2 with the CHARMM-Drude2023 force field (OpenMM)

description: 214.85 ns MD simulation of pure POPC membrane using Charmm-Drude2023 polarizable force field ( <strong>Drude Polarizable Lipid Force Field with Explicit Treatment of LongRange Dispersion:<br> Parametrization and Validation for Saturated and Monounsaturated Zwitterionic Lipids</strong> <strong>)</strong> .The system contains 128 POPC lipids, 91 CaCl2, and 6400 SWM4 water molecules. Before running the Drude simulation, the system has been equilibriated using Charmm36 force field for 200 ns. The last frame of that simulation was used to generate Drude polarizable model. Frame saving frequency is 10ps. There are 21485 frames in this trajectory.
DOI: 10.5281/zenodo.7313503
title: Zeondo dataset for Probing the limits of the phonon quasi-particle picture: Transitions between underdamped and overdamped dynamics in CsPbBr3

description: Zeondo dataset for Probing the limits of the phonon quasi-particle picture: The transition from underdamped to overdamped dynamics in CsPbBr3
DOI: 10.5281/zenodo.7995066
title: Dataset for the intervention effects and long-term changes in physical activity and cardiometabolic outcomes among children at risk of noncommunicable diseases in South Africa

description: Dataset used to evaluate the short-term effects of the physical and health <em>KaziKidz</em> intervention on cardiometabolic risk factors and the long-term changes thereof among school-aged children at risk of NCDs from disadvantaged communities in South Africa. It encompasses anonymized, unique, identification numbers, anthropometric and clinical measures, such as blood pressure, blood sugar and blood lipids, and Actigraphy-measured physical activity levels. Assigned categories to each cardiovascular risk factor and the overall classification as at risk or not is available too.
DOI: 10.17632/s9ph62zvbb.1
title: A refined toxicokinetic model for quantifying the interaction between Cd and Cu in zebrafish larvae

description: This file contains the raw data of all the figures in the article.
DOI: 10.5281/zenodo.7995065
title: Dataset for the intervention effects and long-term changes in physical activity and cardiometabolic outcomes among children at risk of noncommunicable diseases in South Africa

description: Dataset used to evaluate the short-term effects of the physical and health <em>KaziKidz</em> intervention on cardiometabolic risk factors and the long-term changes thereof among school-aged children at risk of NCDs from disadvantaged communities in South Africa. It encompasses anonymized, unique, identification numbers, anthropometric and clinical measures, such as blood pressure, blood sugar and blood lipids, and Actigraphy-measured physical activity levels. Assigned categories to each cardiovascular risk factor and the overall classification as at risk or not is available too.
DOI: 10.6084/m9.figshare.19765849
title: Data and code for aging C57BL/6J proteomics manuscript

description: Data and code used for the aging C57BL/6J proteomics manuscript. Data includes quantitative protein profiling from 10 tissues (kidney, liver, fat, spleen, lung, heart, skeletal muscle, striatum, cerebellum, and hippocampus) from 20 C57BL/6J mice, representing balanced groups by sex and age (8 and 18 months-old). Code for processing data, running analysis, and producing figures are included. Code and data to locally run an interactive data viewer (Shiny application) is also included.
DOI: 10.5281/zenodo.7995105
title: Food-related violence and self-reported food insecurity dataset

description: The repository includes the data to generate the results reported in the study "Impact of food-related violence on self-reported food insecurity" conducted during the Lagrange Project at ISI Foundation in Turin. The README file specifies the content of the CSV file.
DOI: 10.5281/zenodo.7995104
title: Food-related violence and self-reported food insecurity dataset

description: The repository includes the data to generate the results reported in the study "Impact of food-related violence on self-reported food insecurity" conducted during the Lagrange Project at ISI Foundation in Turin. The README file specifies the content of the CSV file.
DOI: 10.17632/ry4v78z2tx.1
title: Paira S. et al. (2023) The sequential recruitments of Rab-GTPase Ypt1p and the NNS complex onto pre-HAC1 mRNA promote its nuclear degradation in baker’s yeast

description: This dataset is the source data for the Manuscript by Paira S. et al. (2023) in which the authors describe the involvement of zypt1p and Nrd1p in the signalling dynamics of Unfolded Protein Response in baker's yeast Saccharomyces cerevisiae.
DOI: 10.5281/zenodo.7995611
title: Absolute Gravity Measurements at the Alpine Research Centre in Obergurgl (Austria) in June 2019

description: This report contains the results of absolute gravity measurements carried out at Alpine Research Centre (University of Innsbruck) in Obergurgl in June 2019. The absolute gravimeter FG5X#216 was operated by Olivier Francis and Sajad Tabibi from the University of Luxembourg. The measurements are part of an on-going research collaboration between the Geophysics Laboratory of the University of Luxembourg and Christian Ullrich from the Bundesamt für Eich- und Vermessungswesen (BEV, Federal Office of Metrology and Surveying) in Vienna, Austria. It is the third time we measured at this site. Measurements were previously performed in June and September 2018.
DOI: 10.5281/zenodo.7995610
title: Absolute Gravity Measurements at the Alpine Research Centre in Obergurgl (Austria) in June 2019

description: This report contains the results of absolute gravity measurements carried out at Alpine Research Centre (University of Innsbruck) in Obergurgl in June 2019. The absolute gravimeter FG5X#216 was operated by Olivier Francis and Sajad Tabibi from the University of Luxembourg. The measurements are part of an on-going research collaboration between the Geophysics Laboratory of the University of Luxembourg and Christian Ullrich from the Bundesamt für Eich- und Vermessungswesen (BEV, Federal Office of Metrology and Surveying) in Vienna, Austria. It is the third time we measured at this site. Measurements were previously performed in June and September 2018.
DOI: 10.5281/zenodo.7995880
title: Data and Supplementary Plots for A Shallow Water Model Exploration of Atmospheric Circulation on Sub-Neptunes

description: This repository contains geopotential maps, zonal wind plots, gifs, and data for the ensemble of possible sub-Neptunes presented in the main manuscript. The data, individual plots, and plot grids are based on the averages of the last 100 simulated days. The data are in the pickle format (see https://docs.python.org/3/library/pickle.html)<br> The gifs are based on the last 1000 simulated hours. These figures and gifs support the analysis presented in the main manuscript.