cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1403446.10fu
title: SH1403446.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403448.10fu
title: SH1403448.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403450.10fu
title: SH1403450.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403451.10fu
title: SH1403451.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403454.10fu
title: SH1403454.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403456.10fu
title: SH1403456.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403457.10fu
title: SH1403457.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403458.10fu
title: SH1403458.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1403459.10fu
title: SH1403459.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25921/vrh9-yn31
title: NOAA/WDS Paleoclimatology - Adélie Drift, East Antarctic Fatty Acid Carbon Isotope Data from 1587-1998 CE

description: The Antarctic coastal zone is an area of high primary productivity, particularly within coastal polynyas where large phytoplankton blooms and drawdown of CO2 occur. Reconstruction of historical primary productivity changes, and the associated driving factors, could provide baseline insights on the role of these areas as sinks for atmospheric CO2, especially in the context of projected changes in coastal Antarctic sea ice. Here we investigate the potential for using carbon isotopes (d13C) of fatty acids in marine sediments as a proxy for primary productivity. We use a highly resolved sediment core from off the coast of Adélie Land spanning the last ~ 400 years and monitor changes in the concentrations and d13C of fatty acids along with other proxy data from the same core. We discuss the different possible drivers of their variability and argue that C24 fatty acid d13C predominantly reflects phytoplankton productivity in open water environments, while C18 fatty acid d13C reflects productivity in the marginal ice zone. These new proxies have implications for better understanding carbon cycle dynamics in the Antarctica coastal zone in future paleoclimate studies.
description: Provided Keywords: Paleoceanography, Sea Ice Reconstruction, biogeochemical cycles, carbon cycle, Holocene, Antarctic
DOI: 10.25921/v54c-be60
title: NOAA/WDS Paleoclimatology - Lake Hirvijaervi Holocene Surface Air Temperature Climate Reconstructions

description: Effective moisture and temperature dynamics during the late glacial and Holocene were reconstructed from fossil midge (Diptera: Nematocera) assemblages in Lake Hirvijärvi, southern Finland. Quantitative inferences were performed using midge-based transfer functions for water depth and mean July air temperature. The aim was to identify major trends in Holocene climate development. The results were generally consistent with patterns found in previous investigations from nearby regions and indicated some distinct differences in palaeoclimate between southern and northern Finland. The results indicate that the region was characterised by a very cold Late Pleistocene, cool and moist but drying early Holocene, warm and moist mid Holocene and cool and moist late Holocene. A progressive trend of increasing lake levels from the early Holocene towards the present was evident. The results of this study provide implications for regional differences in effective moisture between southern and northern Finland during the Holocene. Copyright © 2010 John Wiley & Sons, Ltd.
description: This dataset was contributed as part of the Temperature-12k project (https://doi.org/10.25921/4RY2-G808). Data were contributed to the project from the original data generators, who are listed in the Investigator field of this template file. Additional notes regarding the use of these data in the Temperature-12k project can be found in the LiPD file listed as an Online_Resource of this template file.
DOI: 10.25921/vqm9-c062
title: NOAA/WDS Paleoclimatology - Southernmost Chilean Fjord Region Sea Surface Temperature Reconstructions during the Last 12000 Years

description: Here we provide three new Holocene (11–0 cal ka BP) alkenone-derived sea surface temperature (SST) records from the southernmost Chilean fjord region (50–53°S). SST estimates may be biased towards summer temperature in this region, as revealed by a large set of surface sediments. The Holocene records show consistently warmer than present-day SSTs except for the past ~ 0.6 cal ka BP. However, they do not exhibit an early Holocene temperature optimum as registered further north off Chile and in Antarctica. This may have resulted from a combination of factors including decreased inflow of warmer open marine waters due to lower sea-level stands, enhanced advection of colder and fresher inner fjord waters, and stronger westerly winds. During the mid-Holocene, pronounced short-term variations of up to 2.5°C and a cooling centered at ~ 5 cal ka BP, which coincides with the first Neoglacial glacier advance in the Southern Andes, are recorded. The latest Holocene is characterized by two pronounced cold events centered at ~ 0.6 and 0.25 cal ka BP, i.e., during the Little Ice Age. These cold events have lower amplitudes in the offshore records, suggesting an amplification of the SST signal in the inner fjords.
description: This dataset was contributed as part of the Temperature-12k project (https://doi.org/10.25921/4RY2-G808). Data were contributed to the project from the original data generators, who are listed in the Investigator field of this template file. Additional notes regarding the use of these data in the Temperature-12k project can be found in the LiPD file listed as an Online_Resource of this template file. Note added by Temperature-12k authors: missing Uk37 data; no Bayesian recalibration.
DOI: 10.25921/vdtv-qf41
title: NOAA/WDS Paleoclimatology - Paleo-pCO2 Database: Miocene pCO2 Reconstruction Data from Clarkia, Idaho

description: Leaf gas-exchange models are increasingly used to reconstruct ancient atmospheric carbon dioxide (CO2) concentrations. One of these widely used models, the Franks model, requires stomatal size (guard cell width and either guard cell length or pore length), whole-leaf stomatal density, and bulk-leaf carbon isotope composition (d13C) from plant fossils. However, natural variations of these parameters within and across plant leaves have not been assessed closely, hindering the application of this model and the evaluation of its associated uncertainties. Here we investigate the range of variations of these parameters, and evaluate their impact on the output of the Franks model in three conifers (Metasequoia, Sequoia, and Taxodium). We introduce a modified cleared leaf method that allows accurate measurements of stomatal size. We show that among the stomatal size parameters, pore length is the most variable. Whole-leaf stomatal density can be accurately estimated in a representative area in the middle portion of a leaf. Variations of d13C values are only slightly above analytical errors within a leaf and between leaves from a branchlet, but a ~ 1‰ negative shift of d13C during early decay of Metasequoia leaf tissues was observed. Our measured ranges in pore length and whole-leaf stomatal density have the biggest influence on model estimated CO2. To improve model performance, we recommend (1) the use of our modified cleared leaf method to acquire accurate stomatal size and whole-leaf stomatal density measurements from the middle portion of a leaf located at the middle portion of a branchlet; (2) scaling pore length from guard cell length; and (3) a systematic correction of carbon isotope fractionation may be applicable if information regarding tissue decay and fossil preservation is available. We tested our recommendations by reconstructing CO2 from both extant and fossil materials. Franks model-derived CO2 based upon modern leaves collected in 2004 and 2020 (346 and 416 ppm) are close to their targets (378 and 414 ppm) whereas stomatal frequency methods substantially underestimate (285 and 341 ppm). Reconstructed CO2 from the middle Miocene Clarkia deposit (505 and 507 ppm for Metasequoia and Taxodium) are comparable with published results. We conclude that an improved cleared leaf method for accurate measurements of key stomatal parameters and a statistically-informed stomatal counting strategy will improve the performance of the Franks model for reconstructing CO2 using these conifers with wide distributions of fossil records in the Northern Hemisphere since the Cretaceous.
DOI: 10.25921/vtm5-ze51
title: NOAA/WDS Paleoclimatology - O'Connor fire data from Pinalenos_F16, Southeast Arizona - IMPD USF16001

description: In recent decades fire size and severity have been increasing in high elevation forests of the American Southwest. Ecological outcomes of these increases are difficult to gauge without an historical context for the role of fire in these systems prior to interruption by Euro-American land uses. Across the gradient of forest types in the Pinaleño Mountains, a Sky Island system in southeast Arizona that experienced two relatively large high-severity fires in the last two decades, we compared fire characteristics and climate associations before and after the onset of fire exclusion to determine the degree of similarity between past and recent fires. We use a gridded fire scar and demography sampling network to reconstruct spatially explicit estimates of fire extent and burn severity, as well as climate associations of fires from individual site to landscape scales from 1640 to 2008 C.E. We found that patterns of fire frequency, size, and severity were relatively stable for at least several centuries prior to 1880. A combination of livestock grazing and active fire suppression after circa 1880 led to (1) a significant reduction in fire spread but not fire ignition, (2) a conversion of more than 80% of the landscape from a frequent, low to mixed-severity fire regime to an infrequent mixed to high-severity fire regime, and (3) an increase in fuel continuity within a mid-elevation zone of dry mixed-conifer forest, resulting in increased opportunities for surface and crown fire spread into higher elevation mesic forests. The two most recent fires affecting mesic forests were associated with drought and temperature conditions that were not exceptional in the historical record but that resulted in a relative proportion of high burn severity up to four times that of previous large fires. The ecological effects of these recent fires appear to be more severe than any fire in the reconstructed period, casting uncertainty upon the recovery of historical species composition in high-severity burn patches. Significant changes to the spatial pattern, frequency, and climate associations of spreading fires after 1880 suggest that limits to fuel loading and fuel connectivity sustained by frequent fire have been removed. Coinciding factors of high fuel continuity and fuel loading, projected lengthening of the fire season, and increased variability in seasonal precipitation suggest that large high-severity fires, especially in mixed-conifer forests, will become the predominant fire type without aggressive actions to reduce fuel continuity and restore fire-resilient forest structure and species composition.
description: This dataset was contributed as part of the North American Tree-ring Fire Scar Synthesis (NAFSS) project (https://www.ncei.noaa.gov/access/paleo-search/study/34853). Data were contributed to the project from the original data generators.
DOI: 10.25921/vhfm-rg22
title: NOAA/WDS Paleoclimatology - Schneider - Berlin Volkspark Hasenheide den15 - QURO - ITRDB DEU315

description: Using dendroclimatological techniques this study investigates whether inner city tree-ring width (TRW) chronologies from eight tree species (ash, beech, fir, larch, lime, sessile and pedunculate oak, and pine) are suitable to examine the urban heat island of Berlin, Germany. Climate-growth relationships were analyzed for 18 sites along a gradient of increasing urbanization covering Berlin and surrounding rural areas. As a proxy for defining urban heat island intensities at each site, we applied urbanization parameters such as building fraction, impervious surfaces, and green areas. The response of TRW to monthly and seasonal air temperature, precipitation, aridity, and daily air-temperature ranges were used to identify climate-growth relationships. Trees from urban sites were found to be more sensitive to climate compared to trees in the surrounding hinterland. Ring width of the deciduous species, especially ash, beech, and oak, showed a high sensitivity to summer heat and drought at urban locations (summer signal), whereas conifer species were found suitable for the analysis of the urban heat island in late winter and early spring (winter signal). The summer and winter signals were strongest in tree-ring chronologies when the urban heat island intensities were based on an area of about 200 m to 3000 m centered over the tree locations, and thus reflect the urban climate at the scale of city quarters. For the summer signal, the sensitivity of deciduous tree species to climate increased with urbanity. These results indicate that urban trees can be used for climate response analyses and open new pathways to trace the evolution of urban climate change and more specifically the urban heat island, both in time and space.
description: NOAA Template Raw Measurements file added 2022-05-31. July 2024: Elevation added by WDS-Paleo using get_elev_point() from the elevatr R package with the AWS Terrain Tiles (aws) and WGS 84 reference frame.