cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25810/jgyv-zg57.39
title: New Zealand Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - June 2021

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.14602479.v2
title: Carabid - fungal associations

description: Literature-based associations between ground beetles (Coleoptera: Carabidae) and Fungi. Data are provided as an importable MySQL database, as well as .csv tables, both as separate tables and as one merged dataset.
DOI: 10.6084/m9.figshare.14417471.v1
title: Influences of climate fluctuations on eastern Canada’s burned areas largely outweigh those of Euro-Canadian settlement since AD 1850

description: Data for the paper : Influences of climate fluctuations on eastern Canada’s burned areas largely outweigh those of Euro-Canadian settlement since AD 1850
DOI: 10.25810/3gtp-yy33.18
title: North American Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - June 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5281/zenodo.5153965
title: Landslide location, surface roughness, and age for the Teanaway basin, USA

description: Excel database of mapped landslides in the Teanaway basin, Washington State, US. Landslides were mapped from 1m lidar provided by Quantum Spatial and publicly available at https://lidarportal.dnr.wa.gov/. The surface roughness was calculated with the MAD metric available at https://github.com/cageo/Trevisani-2015.
DOI: 10.6073/pasta/252b32390610407cc9204dc3bea2c8de
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005 (Reformatted to the ecocomDP Design Pattern)

description: This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-mcr/6/58. The abstract below was extracted from the Level 0 data package and is included for context: These data describe the species abundance and size distributions of fishes surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. The abundances of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a five by fifty meter transect which extends from the bottom to the surface of the water column are recorded by a diver using SCUBA. The diver then swims back along a one by fifty meter section of the original transect line and records the abundances of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids etc). Surveys are conducted between 0900 and 1600 hours (Moorea time) during late July or early August each year. In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm. Four replicate transects are surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides) and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless steel posts affixed to the reef. Transects on the forereef are located at a depth of approximately 12m, those on the backreef are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. In addition to the biotic data collected, divers also record data on the date and time each transect was surveyed, wind speed and sea state, swell height in m, amount of cloud cover in % and horizontal visability in m. This monitoring program is consistent with the protocols adopted by the Global Coral Reef Monitoring Network and the Australian Institute of Marine Science for use with the Great Barrier Reef Long-term Monitoring Program. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2020). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
DOI: 10.5519/qd.e93wfxn2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.25380/iastate.14762355
title: AgroIBIS VSF Farmed Pothole Ponding Model Runs

description: This data set includes modeled (AgroIBIS-VSF) output of crop yield for miscanthus and a corn/soybean rotation in .nc format. Input includes the precipitation scenarios (.csv) used to generate the runs, and supplemental observed yield monitor data (.csv) from the research area of interest.
DOI: 10.25380/iastate.14762355.v1
title: AgroIBIS VSF Farmed Pothole Ponding Model Runs

description: This data set includes modeled (AgroIBIS-VSF) output of crop yield for miscanthus and a corn/soybean rotation in .nc format. Input includes the precipitation scenarios (.csv) used to generate the runs, and supplemental observed yield monitor data (.csv) from the research area of interest.
DOI: 10.6084/m9.figshare.15093852
title: spinning t nut data for upload.zip

description: The dataset includes a raw waveform file of MBR data for a spinning T-nut. The T nut rotated at 32000 revolutions per minute. A 100 mm working distance PDV probe measured the displacement to the T-nut at a radius of 4.5 mm. The MBR technique is identical to that described in “Modulation based ranging for direct displacement measurements of a dynamic surface”, Optics Exp. 29 21174 (2021).<br>
DOI: 10.6084/m9.figshare.15093852.v1
title: spinning t nut data for upload.zip

description: The dataset includes a raw waveform file of MBR data for a spinning T-nut. The T nut rotated at 32000 revolutions per minute. A 100 mm working distance PDV probe measured the displacement to the T-nut at a radius of 4.5 mm. The MBR technique is identical to that described in “Modulation based ranging for direct displacement measurements of a dynamic surface”, Optics Exp. 29 21174 (2021).<br>
DOI: 10.25810/00zk-yj28.26
title: Norwegian Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - June 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.25810/zb7c-gf43.18
title: Oceania Newspaper Coverage of Climate Change or Global Warming, 2000-2021 - June 2021

description:         The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.5517/ccdc.csd.cc1pnj40
title: CCDC 1568852: Experimental Crystal Structure Determination

description: Related Article: Aravind Babu Kajjam, Kasturi Singh, R. V. Varun Tej, Sivakumar Vaidyanathan|2021|Mat.Advs.|2|5236|doi:10.1039/D1MA00445J
DOI: 10.5517/ccdc.csd.cc1pnj51
title: CCDC 1568853: Experimental Crystal Structure Determination

description: Related Article: Aravind Babu Kajjam, Kasturi Singh, R. V. Varun Tej, Sivakumar Vaidyanathan|2021|Mat.Advs.|2|5236|doi:10.1039/D1MA00445J
DOI: 10.5517/ccdc.csd.cc1pr3m5
title: CCDC 1571347: Experimental Crystal Structure Determination

description: Related Article: Aravind Babu Kajjam, Kasturi Singh, R. V. Varun Tej, Sivakumar Vaidyanathan|2021|Mat.Advs.|2|5236|doi:10.1039/D1MA00445J
DOI: 10.5517/ccdc.csd.cc2728f1
title: CCDC 2057762: Experimental Crystal Structure Determination

description: Related Article: Fangzhi Hu, Liang Wang, Chunyan Ge, Xinyao Li, Zhanshuai Ding, Lubin Xu, Shuai-Shuai Li|2021|Green Chemistry|23|5535|doi:10.1039/D1GC00941A
DOI: 10.5517/ccdc.csd.cc2728g2
title: CCDC 2057763: Experimental Crystal Structure Determination

description: Related Article: Fangzhi Hu, Liang Wang, Chunyan Ge, Xinyao Li, Zhanshuai Ding, Lubin Xu, Shuai-Shuai Li|2021|Green Chemistry|23|5535|doi:10.1039/D1GC00941A
DOI: 10.5517/ccdc.csd.cc2760t9
title: CCDC 2061370: Experimental Crystal Structure Determination

description: Related Article: Fangzhi Hu, Liang Wang, Chunyan Ge, Xinyao Li, Zhanshuai Ding, Lubin Xu, Shuai-Shuai Li|2021|Green Chemistry|23|5535|doi:10.1039/D1GC00941A
DOI: 10.5517/ccdc.csd.cc27mg3g
title: CCDC 2074275: Experimental Crystal Structure Determination

description: Related Article: Sandra Abi Fayssal, Timothée Naret, Vincent Huc, Julien Buendia, Cyril Martini, Emmanuelle Schulz|2021|Cat.Sci.Tech.|11|5223|doi:10.1039/D1CY00669J
DOI: 10.5517/ccdc.csd.cc27wmnf
title: CCDC 2082135: Experimental Crystal Structure Determination

description: Related Article: Simone Eizagirre Barker, Helen Benjamin, Carole A. Morrison, Sergejs Afanasjevs, Gary S. Nichol, Stephen Moggach, Konstantin Kamenev, Neil Robertson|2021|Mat.Advs.|2|5135|doi:10.1039/D1MA00416F
DOI: 10.5517/ccdc.csd.cc27wmpg
title: CCDC 2082136: Experimental Crystal Structure Determination

description: Related Article: Simone Eizagirre Barker, Helen Benjamin, Carole A. Morrison, Sergejs Afanasjevs, Gary S. Nichol, Stephen Moggach, Konstantin Kamenev, Neil Robertson|2021|Mat.Advs.|2|5135|doi:10.1039/D1MA00416F
DOI: 10.5517/ccdc.csd.cc27wmqh
title: CCDC 2082137: Experimental Crystal Structure Determination

description: Related Article: Simone Eizagirre Barker, Helen Benjamin, Carole A. Morrison, Sergejs Afanasjevs, Gary S. Nichol, Stephen Moggach, Konstantin Kamenev, Neil Robertson|2021|Mat.Advs.|2|5135|doi:10.1039/D1MA00416F
DOI: 10.5517/ccdc.csd.cc283vfp
title: CCDC 2089072: Experimental Crystal Structure Determination

description: Related Article: Karol Grela, Rafał Kusy|2021|Green Chemistry|23|5494|doi:10.1039/D1GC01206A
description: Related Article: Karol Grela, Rafał Kusy|2021|CSD Communication|||
DOI: 10.5281/zenodo.4902141
title: The Outer Stellar Mass of Massive Galaxies: A Simple Tracer of Halo Mass with Scatter Comparable to Richness and Reduced Projection Effects

description: These are the data for reproducing the results of the publication titled "The Outer Stellar Mass of Massive Galaxies: A Simple Tracer of Halo Mass with Scatter Comparable to Richness and Reduced Projection Effects" by Song Huang et al.
DOI: 10.6092/unibo/amsacta/6627
title: FIT4REUSE. WP3. Regeneration and modelling of a phosphorous removal and recovery hybrid ion exchange resin after long term operation with municipal wastewater

description: Adsorption represents one of the most promising process for phosphorous (P) removal and recovery from municipal wastewater, but questions about its long-term stability remain. The goals of this work were (i) to assess changes in morphology and adsorption performances of hybrid anion exchanger (HAIX) LayneRT after 2.5 years of operation in a 10 m3 d-1 demonstration plant fed with secondary-treated municipal wastewater, (ii) to optimize the LayneRT regeneration procedure, and (iii) to evaluate the suitability of the ion exchange model to describe P adsorption on LayneRT. LayneRT is composed of hydrated ferric nanoparticles dispersed in a strong base anion exchange resin. Batch and continuous flow adsorption/desorption tests were conducted with the resin used for 2.5 years, regenerated with two alternative solutions: NaOH, reactivating mainly the iron nanoparticles active sites, and NaOH + NaCl, also regenerating the active sites of the ion exchange media. The physicochemical characterization by Scanning Electron Microscope indicated that regeneration by NaOH significantly reduced the deterioration of the resin surface, even after 59 adsorption/desorption cycles. Lab-scale continuous flow tests showed that the resin regenerated with either solution featured P adsorption performances very close to that of the virgin resin. The isotherm tests showed that P adsorption by LayneRT was effectively simulated with the ion exchange model. This study confirms that LayneRT is a durable, resistant and promising media for P recovery from wastewater.
DOI: 10.5281/zenodo.5137962
title: Data set for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

description: Data set and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"<br> <br> The file "dna_binding_protein_sequences.zip" has the testing and training sets from the paper:<br> <br> RLL - "random_&lt;train/test&gt;_full_1000.csv"<br> RSL - "random_&lt;train/test&gt;_50.csv"<br> RS&LL - "random_&lt;train/test&gt;_50_1000.csv"<br> RLL where included positive examples have verified DNA binding activity - "random_&lt;train/test&gt;_hq_1000.csv"<br> <br> The results files are named similarly.<br> The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab." See code. <br> <br> The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"
DOI: 10.6084/m9.figshare.14697210
title: Lower Super Output Area (LSOA) level estimates of health outcomes and household income in 2018

description: Estimates of health outcomes and average household net income per month at the Lower Super Output Area (LSOA) level for the city regions of Manchester, Sheffield, Cardiff, and Glasgow in 2018
DOI: 10.6084/m9.figshare.15086952
title: Savanna FVC and Classification Methods, including Random Forest

description: Script Notes:There are four main scripts for processing the data. They were run in the following order:1. randomforest_FVC.R (pixel-based RF)2. FVC_zonalstats.R (zonal summation by segment polygons for inclusion in the segment-based RF)3. randomforest_FVC_segments.R (segment-based RF with modified script that double checks using segments)4. FVC_thresholding.R (theshold classification method)<br>Each script includes similar sections on separating out the validation data from the "Master_TrainingData_R.csv" and includes similar processing for accuracy metrics. Script 3 for the segment RF includes a modified TrainingData "Master_TrainingData_Segments.R" which includes columns for segment poly values rather than using the pixel-based values.
DOI: 10.6084/m9.figshare.15086952.v1
title: Savanna FVC and Classification Methods, including Random Forest

description: Script Notes:There are four main scripts for processing the data. They were run in the following order:1. randomforest_FVC.R (pixel-based RF)2. FVC_zonalstats.R (zonal summation by segment polygons for inclusion in the segment-based RF)3. randomforest_FVC_segments.R (segment-based RF with modified script that double checks using segments)4. FVC_thresholding.R (theshold classification method)<br>Each script includes similar sections on separating out the validation data from the "Master_TrainingData_R.csv" and includes similar processing for accuracy metrics. Script 3 for the segment RF includes a modified TrainingData "Master_TrainingData_Segments.R" which includes columns for segment poly values rather than using the pixel-based values.
DOI: 10.6084/m9.figshare.15093927
title: Monito_Gecko_Analysis

description: Supplemental information for analysis in manuscript submitted to Caribbean Naturalist related to Monito Gecko delisting.
DOI: 10.6084/m9.figshare.15093927.v1
title: Monito_Gecko_Analysis

description: Supplemental information for analysis in manuscript submitted to Caribbean Naturalist related to Monito Gecko delisting.
DOI: 10.25345/c5kz6q
title: MassIVE MSV000087932 - Thiol-Based Functional Mimicry of Phosphorylation of the Two-Component System Response Regulator ArcA Promotes Pathogenesis in Enteric Pathogens
title: Pathogenic bacteria can rapidly respond to stress environments, such as exposure to reactive oxygen species (ROS). The thiol (-SH) groups of cysteine residues in many proteins serve as redox-sensitive switches, providing triggers for ROS-mediated signaling events. In this study, we profiled the reversible thiol oxidation during ROS exposure of the proteome of Vibrio cholerae, a Gram-negative human pathogen that causes cholera. We identified posttranslational modifications of two cysteine residues of ArcA, a response regulator that is known to be phosphorylated under oxygen limiting conditions and regulates global carbon oxidation pathways. We showed that although ROS exposure abolished ArcA phosphorylation, it induced the formation of an intramolecular disulfide that promoted ArcA-ArcA interaction. Thiol oxidation of ArcA led to sustained ArcA activity and ROS resistance. We further demonstrated that V. cholerae ArcA cysteine residues were oxidized in cholera patient diarrheal stools, and that ArcA thiol oxidation is crucial for V. cholerae in vitro ROS resistance, colonization of ROS-rich gut niches, and environmental survival. Moreover, in other enteric pathogens such as Salmonella enterica, the cysteine residues in ArcA orthologs are conserved and thiol oxidation of ArcA plays important roles in ROS resistance both in vitro and in host cells. These results suggest that in enteric pathogens, as a response to ROS insults, thiol oxidation of ArcA is able to functionally mimic phosphorylation and retain ArcA activity, allowing for a balance in the expression of stress-related and pathogenesis-related genetic programs.
DOI: 10.6084/m9.figshare.13302743.v1
title: Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level

description: Supplemental data of the article entitled "Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level", published in Physiological Reports.
DOI: 10.6084/m9.figshare.13302743
title: Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level

description: Supplemental data of the article entitled "Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level", published in Physiological Reports.
DOI: 10.6084/m9.figshare.13302743.v3
title: Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level

description: Supplemental data of the article entitled "Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level", published in Physiological Reports.
DOI: 10.6084/m9.figshare.13302743.v2
title: Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level

description: Supplemental data of the article entitled "Surface wave elastography is a reliable method to correlate muscle elasticity, torque, and EMG activity level", published in Physiological Reports.
DOI: 10.6084/m9.figshare.13872683
title: Impact of Amplification Efficiency on TL Measurement via qPCR

description: Comparison of methods to calculate telomere length (TL). In this project we compared how amplification efficiency estimates derived from the Rotor-Gene Q rotary thermocylcer instrument compared to those generated using LinRegPCR. Furthermore, we compared how resulting T/S ratios calculated using these different approaches compared in their performance with external validity metrics.<br>Replicate level dataset hosts Ct values, T and S estimates, and related metrics of these values such as standard deviation and coefficient of variation across replicate reactions. <br>Sample level dataset contains T/S ratios generated from summarized results in replicate level dataset. Each row contains the T/S ratio of a given individual at a given time point. Some rows also contain paired T/S ratios from blood and buccal samples that were collected at the same time point for cross tissue comparisons. <br>Plate level dataset contains efficiency estimates for the various approaches utilized in the manuscript text. These include efficiencies estimated by the RotorGene Q standard curve, LinRegPCR log-linear reconstruction, and LinRegPCR standard curve. <br>Matched dataset contains T/S ratios of individuals nested by family ID for up to three generations within a family. Each row contains a parent-offspring pair. In some cases a single parent is represented on more than one row as some parents had multiple offspring. <br>Together these datasets comprise all the data used to generate the findings reported in the publication linked below.
DOI: 10.6084/m9.figshare.13872683.v2
title: Impact of Amplification Efficiency on TL Measurement via qPCR

description: Comparison of methods to calculate telomere length (TL). In this project we compared how amplification efficiency estimates derived from the Rotor-Gene Q rotary thermocylcer instrument compared to those generated using LinRegPCR. Furthermore, we compared how resulting T/S ratios calculated using these different approaches compared in their performance with external validity metrics.<br>Replicate level dataset hosts Ct values, T and S estimates, and related metrics of these values such as standard deviation and coefficient of variation across replicate reactions. <br>Sample level dataset contains T/S ratios generated from summarized results in replicate level dataset. Each row contains the T/S ratio of a given individual at a given time point. Some rows also contain paired T/S ratios from blood and buccal samples that were collected at the same time point for cross tissue comparisons. <br>Plate level dataset contains efficiency estimates for the various approaches utilized in the manuscript text. These include efficiencies estimated by the RotorGene Q standard curve, LinRegPCR log-linear reconstruction, and LinRegPCR standard curve. <br>Matched dataset contains T/S ratios of individuals nested by family ID for up to three generations within a family. Each row contains a parent-offspring pair. In some cases a single parent is represented on more than one row as some parents had multiple offspring. <br>Together these datasets comprise all the data used to generate the findings reported in the publication linked below.