cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3612815_d11
title: Additional file 5: Table S4. of Genome-wide characterization of human L1 antisense promoter-driven transcripts

description: (excel) YY1 binding site prediction in L1HS consensus 5â   UTR using online tool JASPAR Scan. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3612839_d5
title: Additional file 3: of Validity assessment of the symptom checklist SCL-90-R and shortened versions for the general population in Ukraine

description: Confirmatory factor analysis of the SCL-27 in the Ukrainian general population: factor loadings. Results of confirmatory factor analysis. Factor loadings for six dimensions of the SCL-27 in 1997, 1999 and 2014 studies that are representative of the Ukrainian population. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3613241_d3
title: MOESM5 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 5 (CYS 55Â kb)
DOI: 10.6084/m9.figshare.c.3613241_d4
title: MOESM9 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 9 (CYS 124Â kb)
DOI: 10.6084/m9.figshare.c.3613184_d11
title: Additional file 9: Table S8. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: CpG sites which are present or absent from the hypomethylation signature comparisons between the test tumour set, published normal brain controls and published tumour sets. The 311 CpG sites were compared to published normal controls and tumour sets, and the data represented as heatmaps in Additional file 3: Figures S13-S16. Some of the CpG sites were not represented in the comparison datasets; therefore the lists of present CpG sites are shown. The 311 CpG sites are ordered from low to high methylation in the pilocytic astrocytomas. Normal brain controls (1_Cerebellum [Lambert et al, Acta Neuropathologica 126:291-301, 2013]; Cerebral cortex [Guintivano et al, Epigenetics 8:290-302, 2013]); paediatric low-grade astrocytomas (2_validation tumour set 2; 3_[Lambert et al, Acta Neuropathologica 126:291-301, 2013]); adult low-grade astrocytomas (4_TCGA); paediatric and adult high-grade astrocytomas (5_[Sturm et al, Cancer Cell 22:425-437, 2012]), medulloblastomas (6_ [Schwalbe et al, Acta Neuropathologica 126:943-946, 2013]; Ependymomas (7_GSE45353 [Mack et al, Nature 506:445-450, 2014]) and foetal brain during development (8_GSE58885 [Spiers et al, Genome Research 25:338-352, 2015]). (XLSX 320 kb)
DOI: 10.6084/m9.figshare.c.3613226_d4
title: Additional file 7: Table S2. of Ligation-free ribosome profiling of cell type-specific translation in the brain

description: Table of genes altered following AZD-8055 treatment with p adj values &lt;0.05 and fold change &gt;2. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3613184_d12
title: Additional file 13: Table S12. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Comparison of methylation and expression for genes associated with 315 differentially methylated sites in pilocytic and diffuse astrocytomas. Correlation coefficients are shown for differentially methylated CpG sites that show a difference of â Ľ2-fold in expression of the associated gene. Expression probes were only assessed if they were located within the mRNA transcript. A) CpG sites located within the promoter of the gene. B) CpG sites located within the gene body, 3â  UTR and intergenic regions. As the CpG is not within a promoter, correlation was also calculated for a CpG site within the promoter (where possible within the TSS200; brown panel). For each correlation p-values and Benjamini-Hochberg corrected p-values are shown. The table is ordered by FDR-corrected p-values (sites with a p-value &lt;0.05 are shown in blue). Positive correlation is highlighted in yellow. Up-regulated genes in diffuse astrocytomas are highlighted in green. When the expression probe was located in an exon, the probe for the full transcript was used for the correlation (indicated by the asterisk). (XLSX 85 kb)
DOI: 10.6084/m9.figshare.c.3613241_d5
title: MOESM8 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 8 (CYS 516Â kb)
DOI: 10.6084/m9.figshare.c.3613184_d13
title: Additional file 1: Table S1. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Study tumour set, validation tumour set and controls. Clinical features of patients, tumour pathology and genetic changes are shown. Samples that were included in the whole genome sequencing (WGS) study of the Pediatric Cancer Genome Project (PCGP) are noted together with the original patient numbers [Zhang et al, Nature Genetics 45(6):602-614, 2013]. (XLSX 406 kb)
DOI: 10.6084/m9.figshare.c.3613241_d6
title: MOESM14 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 14 (CYS 723Â kb)
DOI: 10.6084/m9.figshare.c.3613241_d7
title: MOESM3 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 3 (XLSX 21195Â kb)
DOI: 10.6084/m9.figshare.c.3613265_d1
title: Additional file 2: of Lysine supplementation is not effective for the prevention or treatment of feline herpesvirus 1 infection in cats: a systematic review

description: Comparative analysis of arginine content of human, cat, HHV-1 and FHV-1 exome. Arginine percentage of human, cat, HHV-1 and FHV-1 proteins. Protein name, protein length in amino acids, the number of arginine residues in the protein and the percentage of arginine in the protein are shown in columns A, B, C and D, respectively. Each data set is sorted on arginine percentage. For human and feline herpesvirus 1, structural proteins are classified based on Genbank annotations (column E). (XLSX 5460 kb)
DOI: 10.25921/c05y-p840
title: EK80 Water Column Sonar Data Collected During W00720
DOI: 10.15468/dl.du59hs
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "EventDate is 1968-01-18",
 "OccurrenceStatus is Present",
 "RecordNumber is 18491",
 "RecordedBy is one of (HATSCHBACH, HATSCHBACH, G., Hatschbach, Hatschbach , G., Hatschbach C., Hatschbach G., Hatschbach, G. G., G. HATSCHBACH, G. G. Hatschbach, Hatschbach, G)"
 ]
}

 The dataset includes 6 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033505-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613442_d11
title: Additional file 9: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig. S3. (XLSX 161 kb)
DOI: 10.6084/m9.figshare.c.3613487_d4
title: Additional file 2: of Passive dust collectors for assessing airborne microbial material

description: Bacteria OTU table. The file contains the full dataset of bacterial orders detected.
DOI: 10.6084/m9.figshare.c.3613442_d13
title: Additional file 5: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig. S1. (XLSX 155 kb)
DOI: 10.6084/m9.figshare.c.3613442_d15
title: Additional file 2: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig.Â 1 . (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3613544_d2
title: Additional file 3: Table S1. of Microbiological, clinical and molecular findings of non-typhoidal Salmonella bloodstream infections associated with malaria, Oriental Province, Democratic Republic of the Congo

description: Dataset of isolates collected in the Oriental Province, DRC between 2009 and 2014 that were used for this paper. DCS = Decreased Ciprofloxacin Susceptibility; R = Resistance; ZOI: Zone of inhibition. (XLSX 17 kb)
DOI: 10.25810/1288-sx15
title: FIRED Costa Rica Nov 2000 - July 2024

description: This is event-level polygons for the fire event delineation (FIRED) product for COSTA RICA from November 2000  to August 2024. It is derived from the MODIS MCD64A1 burned area product (see https://lpdaac.usgs.gov/products/mcd64a1v061/ for more details). The MCD64A1 is a monthly raster grid of estimated burned dates. Firedpy (https://github.com/earthlab/firedpy) is an algorithm that converts these rasters into events by stacking the entire time series into a spatial-temporal data cube, then uses an algorithm to assign event identification numbers to pixels that fit into the same 3-dimensional spatial temporal window. This particular dataset was created using a spatial parameter of 1 pixels and 5 days. Daily polygons are included and the event identification numbers are the same for both files, but the event-level product has only single polygons for each entire event, while the daily product has separate polygons for each date per event. See the associated paper for more details on the methods and more:

Balch, J.K.; St. Denis, L.A.; Mahood, A.L.; Mietkiewicz, N.P.; Williams, T.M.; McGlinchy, J.; Cook, M.C. FIRED (Fire Events Delineation): An Open, Flexible Algorithm and Database of US Fire Events Derived from the MODIS Burned Area Product (2001–2019). Remote Sens. 2020, 12, 3498. https://doi.org/10.3390/rs12213498
DOI: 10.6084/m9.figshare.c.3613748_d1
title: MOESM3 of Group size, survival and surprisingly short lifespan in socially foraging bats

description: Additional file 3 : Survival matrix of 63 adult females analysed with MSMR models. The columns represent respectively the 15 months of recording with absence or group size (1-15), the sex (16), the age (17), the year of first marking (18), and the capture site (19).
DOI: 10.6084/m9.figshare.c.3613646_d19
title: Additional file 25: Table S11. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

description: Metabolites with unknown pathways with their disease implications. There are 15 medicinally relevant metabolites in Ocimum sp. with unknown pathways.
DOI: 10.6084/m9.figshare.c.3613727_d4
title: Additional file 4: of Land or sea? Foraging area choice during breeding by an omnivorous gull

description: Table of transect locations (.xls). Locations of transects and fields surveyed in on-site portion of the study (May-June 2013). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3613742_d2
title: MOESM2 of Optimization of yeast-based production of medicinal protoberberine alkaloids

description: Additional file 2.
DOI: 10.6084/m9.figshare.c.3613748_d2
title: MOESM1 of Group size, survival and surprisingly short lifespan in socially foraging bats

description: Additional file 1 : Data set of total group size (adults and juveniles) for 81 capture events at 14 social groups. The columns respectively represent the capture site (1), the capture date (2), the capture month (3), and the total group size (adults and juveniles) (4).
DOI: 10.15468/dl.tvr4kg
title: Occurrence Download

description: A dataset containing 4768 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Penguin Biogeography Project: Database of abundance and distribution for the Adélie, chinstrap, gentoo, emperor, macaroni, and king penguin south of 60 S"
 ]
}

 The dataset includes 4768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033507-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613646_d20
title: Additional file 18: Table S7. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

description: Associations of O. tenuiflorum a) scaffolds related to metabolite-related genes, b) longer length scaffolds (greater than 10Kb in size) to four different plant genomes.
DOI: 10.6084/m9.figshare.c.3613748_d3
title: MOESM2 of Group size, survival and surprisingly short lifespan in socially foraging bats

description: Additional file 2 : Survival dataset with estimated lifespan from 114 recaptures of 70 females analysed with Cox PH models. The columns respectively represent the individual transponder (1), the capture site (2), the capture date (3), the minimum survival time in days (4), the estimated survival time from birth in days (5), the censoring of the observation (6), the total group size at previous capture (adults and juveniles) (7), and the adult group size at previous capture (8).
DOI: 10.6084/m9.figshare.c.3613745_d13
title: Additional file 1: of Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome: conserved and plant-specific features

description: A list of known/predicted orthologous genes involved in the Glycine max and Arabidopsis thaliana UPR pathways. (XLS 152Â kb)
DOI: 10.6084/m9.figshare.c.3613775_d2
title: Additional file 2: of A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples

description: Excel file contains output data from MG-RAST, mPUMA, and MetaVir reported in this study. Singletons have been removed from the analysis. (XLSX 1941Â kb)
DOI: 10.17909/qva8-ge35
title: XUE-1-JWST
DOI: 10.15468/dl.dxqgx4
title: Occurrence Download

description: A dataset containing 638428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 {
 "or" : [
 "Geometry POLYGON((-8.08187 31.31364,-5.85637 31.31364,-5.85637 33.53913,-8.08187 33.53913,-8.08187 31.31364))",
 "Geometry POLYGON((-6.75817 35.71234,-10.27403 33.51349,-12.38354 29.55936,-14.63369 26.95838,-16.04003 24.29594,-18.99335 20.65814,-12.80544 20.52649,-11.11783 25.31718,-8.16451 25.31718,-8.30515 28.45244,-5.07056 29.68162,-0.7109 31.97585,-2.39851 35.94039,-6.75817 35.71234))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 638428 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033489-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613961_d4
title: Additional file 3: of Next-generation sequencing-based detection of germline L1-mediated transductions

description: Contains a list of all L1-transductions discovered in this study near genes that either originate from an intronic sequence or insert into an intronic sequence in macaque, orangutan, chimpanzee and human. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.c.3613973_d1
title: Additional file 4 of Incorporation of subject-level covariates in quantile normalization of miRNA data

description: Summarizes the reproduction of significance results from previous CRC miRNA literature [ 31 , 32 ] as discussed in the â   Application to motivating example (real CRC data) â   section, using the weighted quantile normalization method. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3613973_d2
title: Additional file 1 of Incorporation of subject-level covariates in quantile normalization of miRNA data

description: Provides an implementation of the weighted quantile normalization algorithm (as describe in the â   Weighted quantile normalization â   section) written for the R language [ 25 ], with a demonstration using simulated data. (R 2 kb)
DOI: 10.6084/m9.figshare.c.3613976_d2
title: Additional file 2: of Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions

description: Insertion age and domains of representative sequences from selected Ty1-copia families. Characterization of six Ty1-copia elements which represent the six families investigated in this study. (XLSX 11 kb)
DOI: 10.25921/zxdh-t452
title: EK80 Water Column Sonar Data Collected During W00714
DOI: 10.6084/m9.figshare.c.3614234_d5
title: Additional file 6: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: The top 20 KEGG pathways enrichment of DEGs in SC_ep vs TL_ep. (XLS 1Â kb)
DOI: 10.6084/m9.figshare.c.3614234_d6
title: Additional file 4: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: The top 20 KEGG pathways enrichment of up DEGs in SC_hua vs TL_hua. (XLS 512 bytes)
DOI: 10.6084/m9.figshare.c.3614234_d7
title: Additional file 5: of Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

description: The top 20 KEGG pathways enrichment of down DEGs in SC_hua vs TL_hua. (XLS 977 bytes)
DOI: 10.6084/m9.figshare.c.3614255_d6
title: Additional file 2: of Perspectives on modelling the distribution of ticks for large areas: so far so good?

description: A script in the R environment for programming that loads the coefficients of an harmonic regression, and calculated derived variables that can provide a more ecological meaning of the effects of climate on ticks. The example in the script calculates the derived variables for the Day Temperature, as included in Table 2 of this paper. Data calculated by this script were used to plot the Figs. 4 and 5 in the paper. (CSV 573 kb)
DOI: 10.6084/m9.figshare.c.3614264_d9
title: Additional file 5: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

description: Genes differentially regulated among time point of sample collection. Genes differentially expressed among times of sample collection. The table describes the name of each poplar gene based on all three main annotations of the poplar genome (v. 1.1, v. 2.2 and v. 3.0), the name of the probe on the microarray, the FDR adjusted p-value for the F-test of the effect of TIME in the ANOVA, and the estimate of the effect of TIME at 0, 24, 48, 96 and 192Â h. (XLSX 3466Â kb)
DOI: 10.6084/m9.figshare.c.3614474_d5
title: Additional file 3: Table S2. of A systematic comparison of copy number alterations in four types of female cancer

description: GISTIC focal peaks for simulated data – gains and losses. Table S2A exemplifies the number of focal peaks of simulation data for PCF-segmented input data to GISTIC and variable γ from 10 to 90. Table S2B represents GISTIC focal peaks of simulated data for CBS-segmented input data to GISTIC and α varied from 0.00001 to 0.1. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3614474_d6
title: Additional file 14: Figure S5. of A systematic comparison of copy number alterations in four types of female cancer

description: A schematic view of two common genes among female cancers. This schematic view shows the genomic positions of two genes that were found common among female cancers. The figure further suggests an explanation about the lack of any common genes for the focal aberrations at 8q24.3. (XLSX 493 kb)
DOI: 10.6084/m9.figshare.c.3614504_d1
title: Additional file 1: Table S1. of Standing genetic variation as a major contributor to adaptation in the Virginia chicken lines selection experiment

description: Table with additional information on the 252 genotyped markers and their clustering into independently segregating regions in the F15. (XLSX 68Â kb)
DOI: 10.6084/m9.figshare.c.3614474_d8
title: Additional file 15: Table S9. of A systematic comparison of copy number alterations in four types of female cancer

description: Top networks, biological functions, and top canonical pathways (CBS and PCF) - gains and losses. Table S9 illustrates the IPA results including: The top five network functions, biological functions, and top canonical pathways. These results were obtained based on the gene lists (both gain and loss) of GISTIC focal peaks for input data based on both, CBS- and PCF-segmented data for each cancer type. Gray colored regions show the most significant functions/pathways at 5% FDR. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3614510_d1
title: Additional file 1: of Diel patterns in three-dimensional use of space by sea snakes

description: Three-dimensional model of study site in Cleveland Bay (Fig. 1). Black points represent locations of acoustic receivers. Depth has been exaggerated for ease of viewing bathymetry. Sea surface represented at highest astronomical tide at Townsville Port. For the interactive version of this data please visit https://dl.dropboxusercontent.com/u/31456301/3DSS/SM1/index.html
DOI: 10.6084/m9.figshare.c.3614516_d1
title: Additional file 3: of Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

description: Enrichment in gene ontology (GO) terms in the hrpG -induced regulon of X. campestris pv. raphani strain CFBP 5828R. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3614510_d2
title: Additional file 2: of Diel patterns in three-dimensional use of space by sea snakes

description: Three-dimensional space use by a representative Hydrophis curtus within the study site (Fig. 3a). Day-time core (50%-3DKUD; dark red) and extent (95%-3DKUD; light red) 3DKUD as well as night-time core (50%-3DKUD; dark blue) and extent (95%-3DKUD; light blue) 3DKUD are represented. Surrounding bathymetry and sea surface are also rendered to provide context. Black points represent the locations of acoustic receivers within the study site. For the interactive version of this data please visit https://dl.dropboxusercontent.com/u/31456301/3DSS/SM2/index.html . Close up version of this model is available in Additional file 4.
DOI: 10.6084/m9.figshare.c.3614534_d1
title: Additional file 1: Table S1. of The height-, weight- and BMI-for-age of preschool children from Nizhny Novgorod city, Russia, relative to the international growth references

description: Russian preschool children height, weight and BMI by sex and age. Table provides descriptive statistics of height (mean, median, min, max, SD, 95 % CI), weight and BMI (mean, median, min, max, 95 % CI) by sex and age. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3614549_d1
title: Additional file 2: of Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

description: Expression profiles of all genes in R2 and R3 regions. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3614765_d2
title: Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâ  insights from gene expression profiling

description: RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes more highly expressed during lactation. (XLSX 1006 kb)
DOI: 10.6084/m9.figshare.c.3614762_d3
title: Additional file 9: Text S2. of Modeling the integration of bacterial rRNA fragments into the human cancer genome

description: Pseudomonas accessions. A list of GenBank accessions used to calculate the Pseudomonas genome %GC. (TXT 672 bytes)
DOI: 10.6084/m9.figshare.c.3614765_d5
title: Additional file 6: Table S7. of Functional development of the adult ovine mammary glandâ  insights from gene expression profiling

description: Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during late pregnancy. Table S8: Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathways enriched in the ovine mammary gland during lactation. (XLSX 38 kb)