cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gxtcf4
title: Occurrence Download

description: A dataset containing 8389 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fistularia petimba Lacepède, 1803"
 ]
}

 The dataset includes 8389 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0110317-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x58zmk
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidogyne mosaica Ormerod"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068632-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59xeb8
title: Occurrence Download

description: A dataset containing 6733 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Russula risigallina (Batsch) Sacc.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 6733 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252084-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aknggk
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidogyne grayumii Ormerod"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068557-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84u4at
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Allopetalia reticulosa Selys, 1873)"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009989-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z76n53
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-87.6836576999999977 41.8636957000000010, -87.6836576999999977 41.8641006800000000, -87.6836576999999977 41.8646925600000017, -87.6836576999999977 41.8651598399999969, -87.6836576999999977 41.8656271199999992, -87.6836576999999977 41.8661878599999966, -87.6836576999999977 41.8668108999999973, -87.6828469499999983 41.8668108999999973, -87.6821609099999932 41.8668108999999973, -87.6813813100000061 41.8668108999999973, -87.6804457899999932 41.8668108999999973, -87.6797597500000023 41.8668108999999973, -87.6792608100000024 41.8668108999999973, -87.6786059500000050 41.8668108999999973, -87.6778263500000037 41.8668108999999973, -87.6769843900000012 41.8668108999999973, -87.6762983400000024 41.8668108999999973, -87.6758618000000070 41.8668108999999973, -87.6758618000000070 41.8665305299999986, -87.6758618000000070 41.8657517299999995, -87.6758618000000070 41.8650975400000007, -87.6758618000000070 41.8644433500000019, -87.6758618000000070 41.8636957000000010, -87.6762359699999934 41.8636957000000010, -87.6768284700000038 41.8636957000000010, -87.6772962299999961 41.8636957000000010, -87.6778263500000037 41.8636957000000010, -87.6782629199999946 41.8636957000000010, -87.6788242300000036 41.8636957000000010, -87.6794167299999998 41.8636957000000010, -87.6801651399999997 41.8636957000000010, -87.6808511800000048 41.8636957000000010, -87.6812253899999945 41.8636957000000010, -87.6818178799999970 41.8636957000000010, -87.6824415600000009 41.8636957000000010, -87.6831587899999931 41.8636957000000010, -87.6836576999999977 41.8636957000000010))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097163-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77ngsw
title: Occurrence Download

description: A dataset containing 2976 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lagenorhynchus obliquidens Gill, 1865)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2976 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068547-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3sjdms
title: Occurrence Download

description: A dataset containing 476 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diclidurus Wied-Neuwied, 1820"
 ]
}

 The dataset includes 476 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026923-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.585w4g
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Inia geoffrensis (Blainville, 1817), Papaver rhoeas L., Rhetus arcius (Linnaeus, 1763))",
 "Year 2012-2022"
 ]
}

 The dataset includes 170 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0433987-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhsubm
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heleophryne hewitti Boycott, 1988)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068548-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ctr7as
title: Occurrence Download

description: A dataset containing 43698 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ameiurus nebulosus (Lesueur, 1819)"
 ]
}

 The dataset includes 43698 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337782-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.az54gz
title: Occurrence Download

description: A dataset containing 889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plethodon neomexicanus Stebbins & Riemer, 1950)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 889 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068553-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56pdm3
title: Occurrence Download

description: A dataset containing 1719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megapodius laperouse Gaimard, 1823"
 ]
}

 The dataset includes 1719 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363009-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yug5d
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plethodon stormi Highton & Brame, 1965)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 261 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068568-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wtbpw6
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megapodius pritchardii G.R.Gray, 1864"
 ]
}

 The dataset includes 132 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363010-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ytv8q
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nycteris woodi K.Andersen, 1914)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068566-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nmszrn
title: Occurrence Download

description: A dataset containing 373 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyprinella callitaenia (Bailey & Gibbs, 1956)"
 ]
}

 The dataset includes 373 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337801-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4fe5m
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heleophryne rosei Hewitt, 1925)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 66 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068571-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebn9fz
title: Occurrence Download

description: A dataset containing 8948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-132.49412 25.19457,-61.59321 25.19457,-61.59321 53.54280,-132.49412 53.54280,-132.49412 25.19457))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bromus tectorum L.",
 "Year 2014-2024"
 ]
}

 The dataset includes 8948 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009990-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy8vb7
title: Occurrence Download

description: A dataset containing 4191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-119 27,-113 27, -116 34, -119.8 35, -123 46.5, -121 47.5, -135 60, -139 58, -127 47.5, -126 39, -119 27))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zostera L.",
 "Year 2010-2022"
 ]
}

 The dataset includes 4191 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0337819-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q28fjp
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidogyne malmei (Kraenzl.) Garay"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068608-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9tk5h
title: Occurrence Download

description: A dataset containing 1378 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is May",
 "TaxonKey is Plumeria Tourn. ex L."
 ]
}

 The dataset includes 1378 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363031-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfv5dc
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Arthroleptis palava Blackburn, Gvozdík & Leaché, 2010)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068564-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4va9mw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyperolius gularis Ahl, 1931)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068577-230224095556074/datasets/export for details.
DOI: 10.15468/dl.bagag9
title: Occurrence Download

description: A dataset containing 4159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Penelope perspicax Bangs, 1911"
 ]
}

 The dataset includes 4159 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0363033-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26957593.v1
title: QALD-9-plus

description: Translations of non-English questions from QALD-9-plus benchmark into English using NLLB, Helsinki Opus MT, MBart and LibreTranslate.Results are separated into files based on dataset, source language, mt tool, and train/test split.Fields: <b>question_id</b>: the ID of the question inside the given dataset.<b>benchmark</b>: filename (dataset, split, knowledge base) of the used dataset.<b>original_text</b>: text in the source language<b>source_language</b>: German (de), Russian (ru), French (fr) or Spanish (es)<b>translated_text</b>: English translation of <i>original_text</i><b>target_language</b>: English (en)<b>mt_tool</b>: the translation tool that was used; Opus MT (helsinki), No Language Left Behind (nllb), MBart (mbart), LibreTranslate (libretranslate)<b>timestamp</b>: ISO 8601 timestamp
DOI: 10.6084/m9.figshare.26957593
title: QALD-9-plus

description: Translations of non-English questions from QALD-9-plus benchmark into English using NLLB, Helsinki Opus MT, MBart and LibreTranslate.Results are separated into files based on dataset, source language, mt tool, and train/test split.Fields: <b>question_id</b>: the ID of the question inside the given dataset.<b>benchmark</b>: filename (dataset, split, knowledge base) of the used dataset.<b>original_text</b>: text in the source language<b>source_language</b>: German (de), Russian (ru), French (fr) or Spanish (es)<b>translated_text</b>: English translation of <i>original_text</i><b>target_language</b>: English (en)<b>mt_tool</b>: the translation tool that was used; Opus MT (helsinki), No Language Left Behind (nllb), MBart (mbart), LibreTranslate (libretranslate)<b>timestamp</b>: ISO 8601 timestamp
DOI: 10.15468/dl.mj6n2r
title: Occurrence Download

description: A dataset containing 1894 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección viva Jardín Botánico Universidad Tecnológica De Pereira"
 ]
}

 The dataset includes 1894 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000295-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zy2fpc
title: Occurrence Download

description: A dataset containing 675372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Material sample, Specimen, Living Specimen, Human Observation, Occurrence evidence)",
 "Geometry POLYGON((-6.85205 36.02426,-5.51887 36.02426,-5.51887 37.15172,-6.85205 37.15172,-6.85205 36.02426))",
 "HasGeospatialIssue is false",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 675372 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000292-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xc9tp6
title: Occurrence Download

description: A dataset containing 396852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megaptera novaeangliae (Borowski, 1781)"
 ]
}

 The dataset includes 396852 records from 586 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000290-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/9ecce1c1-4bf4-4753-acfd-a5998d061641
title: M/V Dorado Discovery Navigation System Deployed 2015-05-20

description: The MV Dorado Discovery Navigation 01 was deployed on 2015-05-20 on M/V Dorado Discovery. The M/V Dorado Discovery is owned by Odyssey Marine Exploration. This device is a Navigation System. Navigational instruments are used to measure and record positional information of ships, buoys, and autonomous underwater vehicles (AUVs). Typical sensors include latitude, longitude, speed, heading, pitch, roll, and depth. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.11086018
title: Exploring the Potential of Structure-Based Deep Learning Approaches for T cell Receptor Design

description: This repository contains data and results from the study titled "Exploring the Potential of Structure-Based Deep Learning Approaches for T cell Receptor Design". It includes the following compressed files:



TCR_design_data_results: Contains data and results from the TCR design process with ProteinMPNN, ESM-IF, and RosettaDesig, as well as design evaluation with TCRModel2 and Rosetta.

ATLAS_Benchmark: Contains data, scripts, and results of Molecular Dynamics simulations and MM/PBSA calculations of Native TCR:pMHC complexes collected from ATLAS for the binding affinity benchmarking.

MD_MMPBSA_ProteinMPNN_[part1 and part2]: Contain input and output files from the topology generation process, molecular dynamics simulations, and MM/PBSA calculations of ProteinMPNN designs and their corresponding Native complex.

MD_MMPBSA_ESM-IF_[part1 and part2]: Contains the input and output files from the topology generation process, molecular dynamics simulations, and MM/PBSA calculations of ESM-IF designs.

MD_example_additional_scripts: contains additional scripts used in the MD system preparation and trajectory analyses.


For further details, refer to the README.md files within each directory. The abstract of the corresponding study is provided below:

"Deep learning methods, trained on the increasing set of available protein 3D structures and sequences, have substantially impacted the protein modeling and design field. These advancements have facilitated the creation of novel proteins, or the optimization of existing ones designed for specific functions, such as binding a target protein. Despite the demonstrated potential of such approaches in designing general protein binders, their application in designing immunotherapeutics remains relatively unexplored. A relevant application is the design of T cell receptors (TCRs). Given the crucial role of T cells in mediating immune responses, redirecting these cells to tumor or infected target cells through the engineering of TCRs has shown promising results in treating diseases, especially cancer. However, the computational design of TCR interactions presents challenges for current physics-based methods, particularly due to the unique natural characteristics of these interfaces, such as low affinity and cross-reactivity. For this reason, in this study, we explored the potential of two structure-based deep learning protein design methods, ProteinMPNN and ESM-IF, in designing fixed-backbone TCRs for binding target antigenic peptides presented by the MHC through different design scenarios. To evaluate TCR designs, we employed a comprehensive set of sequence- and structure-based metrics, highlighting the benefits of these methods in comparison to classical physics-based design methods and identifying deficiencies for improvement."