cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1553776505
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography and bioSAXS projects at the EMBL Grenoble, IBS-CIBB and IAB. It combines groups working on different topics with a major focus on cell signaling proteins, drug discovery, long non-coding RNAs, nucleic acid-protein complexes, and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and biological small angle X-ray scattering and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra III, and Diamond). As Stephen Cusack (former head of EMBL Grenoble) will be retiring at the end of 2023 we propose to change the BAG responsible to Andrew McCarthy for this application round.
DOI: 10.48597/x6b9-vzgg
title: Measurement of PCB_183 at Alert

description: Measurement of PCB_183 at Alert
DOI: 10.48597/xru6-j7gq
title: Measurement of PCB_19 at Alert

description: Measurement of PCB_19 at Alert
DOI: 10.48597/xubn-krgm
title: Measurement of PCB_191 at Alert

description: Measurement of PCB_191 at Alert
DOI: 10.48597/ydya-u6jf
title: Measurement of PCB_185 at Alert

description: Measurement of PCB_185 at Alert
DOI: 10.48597/yzkp-kphb
title: Measurement of PCB_194 at Alert

description: Measurement of PCB_194 at Alert
DOI: 10.48597/z92f-8qcg
title: Measurement of PCB_97 at Alert

description: Measurement of PCB_97 at Alert
DOI: 10.48597/zfd6-sdjb
title: Measurement of PCB_101 at Alert

description: Measurement of PCB_101 at Alert
DOI: 10.48597/zpkw-q4nk
title: Measurement of PCB_189 at Alert

description: Measurement of PCB_189 at Alert
DOI: 10.48597/zt9p-fvds
title: Measurement of PCB_175 at Alert

description: Measurement of PCB_175 at Alert
DOI: 10.48597/289h-aetg
title: Measurement of PCB_28 at Alert

description: Measurement of PCB_28 at Alert
DOI: 10.48597/2995-bh86
title: Measurement of PCB_194 at Alert

description: Measurement of PCB_194 at Alert
DOI: 10.48597/2ac3-7guj
title: Measurement of PCB_199 at Alert

description: Measurement of PCB_199 at Alert
DOI: 10.48597/2bed-8e5t
title: Measurement of PCB_52 at Alert

description: Measurement of PCB_52 at Alert
DOI: 10.48597/2hug-fc77
title: Measurement of PCB_187 at Alert

description: Measurement of PCB_187 at Alert
DOI: 10.48597/2udx-6ycs
title: Measurement of PCB_193 at Alert

description: Measurement of PCB_193 at Alert
DOI: 10.48597/35dn-cevv
title: Measurement of PCB_64 at Alert

description: Measurement of PCB_64 at Alert
DOI: 10.48597/38sz-2cw5
title: Measurement of PCB_56+60 at Alert

description: Measurement of PCB_56+60 at Alert
DOI: 10.48597/3bgk-g9kq
title: Measurement of PCB_42 at Alert

description: Measurement of PCB_42 at Alert
DOI: 10.48597/3pdx-wejm
title: Measurement of PCB_45 at Alert

description: Measurement of PCB_45 at Alert
DOI: 10.48597/3wkq-9wy2
title: Measurement of PCB_64 at Alert

description: Measurement of PCB_64 at Alert
DOI: 10.48597/4e6w-3bb7
title: Measurement of PCB_48 at Alert

description: Measurement of PCB_48 at Alert
DOI: 10.48597/4t7y-xade
title: Measurement of PCB_26 at Alert

description: Measurement of PCB_26 at Alert
DOI: 10.48597/56sh-9jdu
title: Measurement of PCB_132 at Alert

description: Measurement of PCB_132 at Alert
DOI: 10.48597/584a-y8vw
title: Measurement of PCB_7 at Alert

description: Measurement of PCB_7 at Alert
DOI: 10.17882/85925
title: Pomo Pits Pressure / Temperature / Salinity / Oxygen profiles Spring dataset 2012-2021

description: The Central Adriatic Sea is characterized by three depressions collectively known as Pomo (or Jabuka in Croatian) Pits, with a maximum depth of about 270 m (Marini et al 2016) and bottom mainly composed of fine muddy sediment (Trincardi et al. 2014). The Middle Adriatic Deep Water (MAdDW) dwelling within the Pomo Pits is renewed at intervals of one to three years or occasionally longer, as a result of the formation of the Northern Adriatic Dense Water (NAdDW) (Vilibić 2003; Marini et al 2016).
A spring survey, aimed at assessing the N. norvegicus population inhabiting the Pomo Pits (Central Adriatic Sea, Mediterranean basin) by means of a towed underwater camera (UWTV), is carried out since 2009 by the Ancona section of CNR-IRBIM (formerly part of CNR-Institute of Marine Science; Italy) on board R/V Dallaporta (Martinelli et al. 2013); these cruises were conducted until 2019 (except for 2011 and 2018) jointly with IOF of Split (Croatia) and under the auspices of the FAO – AdriaMed regional project (Scientific Cooperation to Support Responsible Fisheries in the Adriatic Sea (ICES 2021). Currently the UWTV methodology relies on the use of a sledge, towed by an armoured cable, on which a camera system is installed (Dobby et al. 2021). In 2012, some CTD (Conductivity Temperature Depth) casts were carried out in the area during the survey. In 2013, thanks to the Italian National Flagship Program RITMARE, the UWTV equipment owned by CNR-IRBIM was completely renewed in order to allow obtaining better quality images, together with environmental parameters and greater safety on board and ease of operation (ICES 2014).
A calibrated SBE 19plus V2 probe (SeaBird Electronics,USA) was therefore embedded in the UWTV system in order to obtain CTD profiles all along the sledge operations: deployment at seas, sledge dragged on the seabed and hauling (Martinelli et al. 2016). The multi-parameter probe was also equipped with a SBE 43 dissolved oxygen (concentration and saturation) sensor. A SBE 5T pump ensures a constant flow over time inside the sensors.
The dataset here presented contains also classic CTD casts carried out in the area in spring 2021.
In total this spring dataset consists of 250 CTD and oxygen averaged profiles (0.5 db pressure interval) collected in springtime (from 2012 to 2021) within the Pomo Pits and in the surrounding area by means of multi parametric probes embedded on an UWTV system.
All the profiles were subjected to quality control. Data are flagged according the L20 (SEADATANET MEASURAND QUALIFIER FLAGS).
DOI: 10.4121/uuid:77b2c4fc-c253-4494-91bd-8d1ef66a014a
title: High-resolution current meter and hydrographic data from the Irminger Current mooring array 2014-2015

description: The Irminger Current mooring array consists of 5 subsurface ocean moorings in the Irminger Current on the Reykjanes Ridge in the North Atlantic Ocean. The first high-resolution data set of oceanographic variables from instrumentation on these moorings was collected from 11 July 2014 to 10 July 2015. The moorings are named IC0, IC1, IC2, IC3, and IC4 going from west to east. The Irminger Current mooring array is part of the international Overturning of the Subpolar North Atlantic Program (OSNAP, www.o-snap.org) which runs from 2014 to at least 2018. The data set consists ocean temperature, salinity, current velocities, pressure and time. Variables were collected at different time intervals, varying from 5 minutes to 1 hour. The data have been calibrated and quality controlled. The data and metadata are stored in NetCDF files following the Climate Forecast (CF) conventions, see http://cfconventions.org/
DOI: 10.4121/uuid:9ae97ceb-39e4-43ec-abdb-614103285c16
title: High-resolution current meter and hydrographic data from the Irminger Current mooring array 2015-2016

description: The Irminger Current mooring array consists of 5 subsurface ocean moorings in the Irminger Current on the Reykjanes Ridge in the North Atlantic Ocean. The second high-resolution data set of oceanographic variables from instrumentation on these moorings was collected from 15 July 2015 to 6 August 2016. The moorings are named IC0, IC1, IC2, IC3, and IC4 going from west to east. The Irminger Current mooring array is part of the international Overturning of the Subpolar North Atlantic Program (OSNAP, www.o-snap.org) which runs from 2014 to at least 2018. The data set consists ocean temperature, salinity, current velocities, pressure and time. Variables were collected at different time intervals, varying from 5 minutes to 1 hour. The data have been calibrated and quality controlled. The data and metadata are stored in NetCDF files following the Climate Forecast (CF) conventions, see http://cfconventions.org/
DOI: 10.48597/5f2t-yu34
title: Measurement of PCB_149 at Alert

description: Measurement of PCB_149 at Alert
DOI: 10.17882/86453
title: Jerico-S3 TNA access data- Fibre-optic Intelligent Submarine High-Fidelity Environmental Sensing at Smartbay

description: The main objective of this access was to demonstrate the use of fibre optics and artificial intelligence to unobtrusively record data on a variety of marine processes within the cable area such as cable health, marine noise and seabed temperature. NOC will demonstrate the sensing capability of an optoelectronic interrogation unit (OIU) by connecting it to the existing seafloor cable installed at the SmartBay Observatory.
DOI: 10.17882/86456
title: Western Pomo Pit Pressure / Temperature / Salinity / Oxygen profiles Autumn dataset 2015-2021

description: The Central Adriatic Sea is characterized by three depressions collectively known as Pomo (or Jabuka in Croatian) Pits, with a maximum depth of about 270 m (Marini et al 2016) and bottom mainly composed of fine muddy sediment (Trincardi et al. 2014). The Middle Adriatic Deep Water (MAdDW) dwelling within the Pomo Pits is renewed at intervals of one to three years or occasionally longer, as a result of the formation of the Northern Adriatic Dense Water (NAdDW) (Vilibić 2003; Marini et al 2016).
In addition to being characterized by a very peculiar bathymetry and oceanographic characteristics, this area hosts one of the main nursery for the European hake Merluccius merluccius within the Northern and Central Adriatic Sea (Angelini et al. 2016) and a population of Nephrops norvegicus, characterized by small-sized mature individuals (Angelini et al. 2020); furthermore, this area historically represented one of the main fishing ground shared by Italian and Croatian fleets targeting both species, which showed a decline in landing in the last decades (Russo et al. 2018; FAO‐GFCM 2021). After a series of management measures implemented since 2015 by the Italian and Croatian governments, the General Fisheries Commission for the Mediterranean established in 2018 the Pomo Pits Fishery Restricted Area (GFCM 2017) and recently confirmed its permanent duration (GFCM 2021). 
In the framework of an agreement with the Italian Ministry of Agriculture and Forestry (MIPAAF), CNR-IRBIM carries out since 2015, on board R/V Dallaporta, an autumn trawl survey in the western side of the Pomo Pits area; the survey aims to evaluate the effects of the management measures enforced in the area on the most commercially and ecologically important species (ScamPo survey; Martinelli et al. 2021). Furthremore, to understand possible effects of environmental changes on the species abundance and distribution, before or after each trawl haul, CTD (Conductivity Temperature Depth) data are collected with a SeaBird Electronic SBE 911plus (years 2015-2019) and SeaBird Electronic SBE 19plusV2 (years 2020 and 2021). The multi-parameter probes are also equipped with a SBE43 dissolved oxygen (concentration and saturation) sensor. A SBE 5T pump ensures a constant flow over time inside the sensors.
The dataset here presented contains 61 CTD and Oxygen averaged profiles (0.5 db pressure interval) collected in autumn (from 2015 to 2021) within the Pomo Pits and in the surrounding area by means of multi parametric probes.
 All the profiles were subjected to quality control. Data are flagged according the L20 (SEADATANET MEASURAND QUALIFIER FLAGS).
DOI: 10.48597/5hdz-ygy3
title: Measurement of PCB_171 at Alert

description: Measurement of PCB_171 at Alert
DOI: 10.12770/16bc16ef-588a-47e2-803e-03b4acb85dca
title: Metabarcoding of Coastal Ecosystems

description: A total number of 277 water samples were collected during distinct oceanographic cruises or at fixed stations across coastal systems of France and Senegal. The seawater samples were progressively filtered onto size-fractionated filters (representing micro, nano and pico-plankton). Metabarcoding of the V4 domain of the Eukaryotic 18S rDNA region was carried out to characterize the genetic diversity of the sampled communities. Genomic DNA was extracted following the DNA extraction kit Nucleospin Plant II (Macherey-Nagel) and the V4 markers were amplified with a taq polymerase (Phusion High-Fidelity PCR Master Mix with GC Buffer). Sequencing was performed by the Genotoul sequencing platform (get.genotoul.fr) with the Illumina MISeq method (2x250 bp). The present dataset gathers the different results issued from sequencing. This dataset was submitted to sequence cleaning, filtering, taxonomic assignment and OTU clustering, which resulted in a final dataset also presented.
DOI: 10.48597/5jc4-ezs8
title: Measurement of PCB_196+203 at Alert

description: Measurement of PCB_196+203 at Alert
DOI: 10.48597/69a5-faud
title: Measurement of PCB_85 at Alert

description: Measurement of PCB_85 at Alert
DOI: 10.17882/62120
title: An underwater temperature dataset from coastal islands in Santa Catarina, southern Brazil: high accuracy data from different depths

description: This dataset contains underwater temperature (°C) data from seven islands and two submerged rocky reefs along the Santa Catarina coast, southern Brazil, between 26°22’ S and 28°26’ S. Temperature records were acquired every 20 minutes, between December 2012 and July 2014, using a HOBO Pendant® Temperature Data Logger UA-002. The data loggers were installed underwater by SCUBA divers and anchored to the rocky reef with epoxy at 5 m and 12 m depth, in the islands, and at 22 m depth in the submerged reefs. Due to equipment loss, some depths are missing for specific sites. The dataset is structured in seven variables: Site, Latitude, Longitude, Date, Time of Sampling, Temperature (°C) and Depth (meters).
DOI: 10.48597/6fqg-wwyv
title: Measurement of PCB_82 at Alert

description: Measurement of PCB_82 at Alert
DOI: 10.17882/92984
title: Flowcytometry Data set from "Objectif Plancton project" 2018-2021. Bay of Brest

description: Results of phytoplankton description by imaging flowcytometry (Cytosense from Cytobuoy). Water sampling were made during the "Objectif plancton" project from 2018 to 2021 (https://www.mnhn.fr/fr/objectif-plancton-observez-la-biodiversite-marine). At low water, a synoptic sampling throughout the bay was conducted by citizens (17+ sampling stations). Samples were then fixed (between 15 min and 1 h after sampling) and stored (liquid N). After the flowcytometry analysis, a manual clustering was performed and groups were labelled following Thyssen et al. (2022) https://doi.org/10.3389/fmars.2022.975877. Images of the largest cell were also taken during the analysis. Images can be cropped or uncropped acccording to the export file. A synthetic file (CSV) was made for an easy use. Raw and exported files are avaible in *tar archives.
DOI: 10.48597/6ut7-e9yu
title: Measurement of PCB_180 at Alert

description: Measurement of PCB_180 at Alert
DOI: 10.48597/79p3-74pm
title: Measurement of PCB_46 at Alert

description: Measurement of PCB_46 at Alert
DOI: 10.48597/7qgh-5nz2
title: Measurement of PCB_19 at Alert

description: Measurement of PCB_19 at Alert
DOI: 10.48597/8e94-k2kw
title: Measurement of PCB_25 at Alert

description: Measurement of PCB_25 at Alert
DOI: 10.48597/8ey4-w8pm
title: Measurement of PCB_91 at Alert

description: Measurement of PCB_91 at Alert
DOI: 10.48597/95e3-sq7y
title: Measurement of PCB_83 at Alert

description: Measurement of PCB_83 at Alert
DOI: 10.48597/9qk9-y38r
title: Measurement of PCB_207 at Alert

description: Measurement of PCB_207 at Alert
DOI: 10.17882/96514
title: Characterization of the benthic biogeochemical dynamics after flood events in the Rhône River prodelta: the data-set

description: At the land-sea interface, the benthic carbon cycle is strongly influenced by the export of terrigenous particulate material across the river-ocean continuum. Episodic flood events delivering massive sedimentary materials can occur, but their short-term impact on carbon cycling is poorly understood. In this paper, we use a coupled data-model approach to estimate the temporal variations of sediment-water fluxes, biogeochemical pathways and their reaction rates during these abrupt phenomena. We studied one episodic depositional event in the vicinity of the Rhône River mouth (NW Mediterranean Sea) during the fall-winter of 2021-2022. The distribution of dissolved inorganic carbon (DIC), sulfate (SO42-) and methane (CH4) were measured in sediment porewater collected every 2 weeks before and after the deposition of a 25 cm sediment layer during the main winter flood event. Significant changes in the distribution of DIC, SO42- and CH4, concentrations were observed in the sediment porewaters. The use of an early diagenetic model (FESDIA) to calculate biogeochemical reaction rates and fluxes revealed that this type of flooding event can increase the total organic carbon mineralization rate in the sediment by 75% a few days after deposition, essentially by increasing the sulfate reduction contribution to total mineralization relative to non-flood depositional period. It predicts a short-term decrease of the DIC flux out of the sediment from 100 to 55 mmol m-2 d-1 after the deposition of the new sediment layer with a longer-term increase by 4%, therefore implying an initial internal storage of DIC in the newly deposited layer and a slow release over relaxation of the system. Furthermore, examination of the stoichiometric ratios of DIC and SO42- as well as model output over this five-months window shows a decoupling between the two modes of sulfate reduction following the deposition - organoclastic sulfate reduction (OSR) intensified in the newly deposited layer below the sediment surface, whereas anaerobic oxidation of methane (AOM) intensified at depth below the former buried surface. This depth-wise bifurcation of both pathways of sulfate reduction in the sediment column is clearly related to the deepening of the sulfate-methane transition zone (SMTZ) by 25 cm after the flood deposition. Our findings highlight the significance of short-term transient biogeochemical processes at the seafloor and provide new insights on the benthic carbon cycle in the coastal ocean.
DOI: 10.48597/9y8t-4hjm
title: Measurement of PCB_138 at Alert

description: Measurement of PCB_138 at Alert
DOI: 10.17882/98111
title: Map of Chlorophyll a concentrations trend between 1998 and 2019 in the Gulf of Biscay

description: For the 21 years of the study, an examination of trends in chlorophyll concentration revealed a general decline throughout the Gulf over the production period. These trends, extracted from dynamic linear model, also allowed this decline to be quantified. Expressed as a percentage, a large part of the area below the 50 m bathymetric line showed a decrease of at least 10% over the period, corresponding to a value of at least 0.1 µg.l-1. However, the spatial distribution reveals some more local phenomena. In southern Brittany, from Quimper to Vannes, a particular feature appears, with an upward trend over several kilometres along the coast, followed by a pronounced gradient along the coast. This gradient includes a zone where a continuous monotonic increasing trend is observed, then a zone where the trend becomes not significant and finally, about 15 km from the coast, a new zone where a significant continuous monotonic decreasing trend is observed. The increase in chlorophyll a concentration in the very coastal part is greater than 0.1 µg.l-1 over the period. Another peculiarity concerns the central part, located at the edge of the plateau at Cap Ferrat and Pente Aquitaine, where an increase in chlorophyll a was observed, but the variations remained small, being less than 0.1 µg.l-1. About a hundred kilometres south-west of Saint Nazaire, an area of about 40 by 50 km shows a decrease in chlorophyll a of more than 20%, quantified as more than 0.1 µg.l-1 over the period.
DOI: 10.48597/a2db-944z
title: Measurement of PCB_6 at Alert

description: Measurement of PCB_6 at Alert
DOI: 10.17882/98115
title: Modeling of free vibrations of simply-supported submerged horizontal plate

description: A theoretical approach was applied to investigate the vibrations of a simply-supported horizontal plate. A boundary-value problem was formulated within potential wave theory and was solved by employing the method of matched eigenfunction expansions. The derived analytical solution was applied to determine flow fields and loads on a plate. The derived forces were applied in a motion equation to predict natural frequencies for a simple-supported horizontal plate vibrating in a fluid. The derived model was applied to analyze the effect of the geometry of the plate and its physical and material properties on the free vibration of the submerged plate. The effect of flexural plate rigidity and immersion depth has been taken into account.
DOI: 10.48597/avnm-3tew
title: Measurement of PCB_175 at Alert

description: Measurement of PCB_175 at Alert
DOI: 10.48597/b47h-qsgg
title: Measurement of PCB_131 at Alert

description: Measurement of PCB_131 at Alert
DOI: 10.48597/bd4v-8zxy
title: Measurement of PCB_52 at Alert

description: Measurement of PCB_52 at Alert
DOI: 10.48597/cbzh-q5ue
title: Measurement of PCB_174 at Alert

description: Measurement of PCB_174 at Alert
DOI: 10.48597/czu7-vbhr
title: Measurement of PCB_206 at Alert

description: Measurement of PCB_206 at Alert
DOI: 10.48597/d25y-y3cn
title: Measurement of PCB_177 at Alert

description: Measurement of PCB_177 at Alert
DOI: 10.48597/dffz-jsxm
title: Measurement of PCB_136 at Alert

description: Measurement of PCB_136 at Alert
DOI: 10.48597/dnb4-ab93
title: Measurement of PCB_45 at Alert

description: Measurement of PCB_45 at Alert
DOI: 10.48597/dpvp-r7hs
title: Measurement of PCB_18 at Alert

description: Measurement of PCB_18 at Alert
DOI: 10.48597/du8e-dsuj
title: Measurement of PCB_42 at Alert

description: Measurement of PCB_42 at Alert
DOI: 10.48597/e5p6-fqx4
title: Measurement of PCB_47 at Alert

description: Measurement of PCB_47 at Alert
DOI: 10.48597/eytj-7p8u
title: Measurement of PCB_146 at Alert

description: Measurement of PCB_146 at Alert
DOI: 10.48597/f7ew-946g
title: Measurement of PCB_6 at Alert

description: Measurement of PCB_6 at Alert
DOI: 10.48597/fd5t-bfn4
title: Measurement of PCB_22 at Alert

description: Measurement of PCB_22 at Alert
DOI: 10.48597/fjzc-7tv9
title: Measurement of PCB_101 at Alert

description: Measurement of PCB_101 at Alert
DOI: 10.48597/fm6k-gse2
title: Measurement of PCB_97 at Alert

description: Measurement of PCB_97 at Alert
DOI: 10.48597/fsk3-sk4s
title: Measurement of PCB_16+32 at Alert

description: Measurement of PCB_16+32 at Alert
DOI: 10.48597/fvyg-w48h
title: Measurement of PCB_185 at Alert

description: Measurement of PCB_185 at Alert
DOI: 10.48597/g96u-dwf4
title: Measurement of PCB_191 at Alert

description: Measurement of PCB_191 at Alert
DOI: 10.48597/gp7k-78db
title: Measurement of PCB_83 at Alert

description: Measurement of PCB_83 at Alert
DOI: 10.48597/hg4d-eh4w
title: Measurement of PCB_44 at Alert

description: Measurement of PCB_44 at Alert
DOI: 10.48597/ht3r-3e5a
title: Measurement of PCB_134 at Alert

description: Measurement of PCB_134 at Alert
DOI: 10.48597/hykh-47gb
title: Measurement of PCB_41+71 at Alert

description: Measurement of PCB_41+71 at Alert
DOI: 10.48597/ja5d-f4gj
title: Measurement of PCB_95 at Alert

description: Measurement of PCB_95 at Alert
DOI: 10.48597/jbuj-4db7
title: Measurement of PCB_44 at Alert

description: Measurement of PCB_44 at Alert
DOI: 10.48597/jf38-37sp
title: Measurement of PCB_99 at Alert

description: Measurement of PCB_99 at Alert
DOI: 10.48597/jq4k-pryz
title: Measurement of PCB_153 at Alert

description: Measurement of PCB_153 at Alert
DOI: 10.48597/jum8-k2k8
title: Measurement of PCB_118 at Alert

description: Measurement of PCB_118 at Alert