cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1142469.10fu
title: SH1142469.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142470.10fu
title: SH1142470.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142474.10fu
title: SH1142474.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142475.10fu
title: SH1142475.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1142492.10fu
title: SH1142492.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.c.3665683_d5.v1
title: Additional file 10: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #2174. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3665671_d7.v1
title: Additional file 8: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: Functional annotation of I. trifida (Sp2) transcripts using DAVID. (XLSX 12.4 MB)
DOI: 10.6084/m9.figshare.c.3665683_d5
title: Additional file 10: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #2174. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3665671_d7
title: Additional file 8: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: Functional annotation of I. trifida (Sp2) transcripts using DAVID. (XLSX 12.4 MB)
DOI: 10.6084/m9.figshare.c.3665683_d6.v1
title: Additional file 8: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1824. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3665683_d6
title: Additional file 8: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #1824. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3665683_d7.v1
title: Additional file 9: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #2142. (XLSX 124 kb)
DOI: 10.6084/m9.figshare.c.3665671_d8.v1
title: Additional file 12: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: SNPs identified in I. trifida (Sp2). (ZIP 89.7 MB)
DOI: 10.6084/m9.figshare.c.3665710_d1.v1
title: Additional file 4: of Characteristics and use of urban health indicator tools by municipal built environment policy and decision-makers: a systematic review protocol

description: Data extraction form part B. Data extraction form part B. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.c.3665683_d11.v1
title: Additional file 1: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #2234. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.c.3665728_d2.v1
title: Additional file 1: Figure S1. of Characterization of the sdw1 semi-dwarf gene in barley

description: Structure of barley HvGA20ox2 gene and the relative position of the primers used in this study. Figure S2. Plant height (cm) variation in Baudin/AC Metcalfe DH population from three independent field trials (SP-Ht: South Perth plant height; KD Ht: Plant height in Kendup trials. Figure S3. A major QTL for plant height co-segregated with HvGA20ox2 on chromosome 3H. The genetic map is based on Zhou et al. (2015). (ZIP 118 kb)
DOI: 10.6084/m9.figshare.c.3665683_d11
title: Additional file 1: of Detection of critical cerebral desaturation thresholds by three regional oximeters during hypoxia: a pilot study in healthy volunteers

description: Raw data subject #2234. (XLSX 107 kb)
DOI: 10.6084/m9.figshare.c.3665728_d2
title: Additional file 1: Figure S1. of Characterization of the sdw1 semi-dwarf gene in barley

description: Structure of barley HvGA20ox2 gene and the relative position of the primers used in this study. Figure S2. Plant height (cm) variation in Baudin/AC Metcalfe DH population from three independent field trials (SP-Ht: South Perth plant height; KD Ht: Plant height in Kendup trials. Figure S3. A major QTL for plant height co-segregated with HvGA20ox2 on chromosome 3H. The genetic map is based on Zhou et al. (2015). (ZIP 118 kb)
DOI: 10.6084/m9.figshare.c.3665722_d4.v1
title: MOESM1 of B cell repertoires in HLA-sensitized kidney transplant candidates undergoing desensitization therapy

description: Additional file 1: Table S1. Candidate demographics, cPRA level and clinical summary. Table S2. Detailed sample information. Table S3. Primer sequences. Table S4. Mutation frequency correction factors.
DOI: 10.6084/m9.figshare.c.3665671_d11.v1
title: Additional file 5: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: Orthologous genes identified between I. batatas (Sp1) and I. trifida (Sp2). (XLSX 394 KB)
DOI: 10.6084/m9.figshare.c.3665722_d4
title: MOESM1 of B cell repertoires in HLA-sensitized kidney transplant candidates undergoing desensitization therapy

description: Additional file 1: Table S1. Candidate demographics, cPRA level and clinical summary. Table S2. Detailed sample information. Table S3. Primer sequences. Table S4. Mutation frequency correction factors.
DOI: 10.6084/m9.figshare.c.3665671_d11
title: Additional file 5: of Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)

description: Orthologous genes identified between I. batatas (Sp1) and I. trifida (Sp2). (XLSX 394 KB)
DOI: 10.6084/m9.figshare.c.3665737_d2.v1
title: Additional file 12: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in both MCF-7/Twist cells and MCF-7/Twist lung metastases. Probe sets are ranked by fold change. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d4.v1
title: Additional file 1: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in MCF-7/Twist cells, primary tumors, and metastases. Probe sets are ranked by average fold change across all 3 groups. (XLSX 148Â kb)
DOI: 10.6084/m9.figshare.c.3665755_d1.v1
title: Additional file 1: of Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems

description: Overview of Included TCDD Datasets. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d4
title: Additional file 1: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in MCF-7/Twist cells, primary tumors, and metastases. Probe sets are ranked by average fold change across all 3 groups. (XLSX 148Â kb)
DOI: 10.6084/m9.figshare.c.3665758_d1.v1
title: Additional file 4: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

description: List of DE genes in TCA cycles and oxidative phosphorylation. Gene symbols, full gene name and fold change values were displayed. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3665755_d1
title: Additional file 1: of Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems

description: Overview of Included TCDD Datasets. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3665758_d1
title: Additional file 4: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

description: List of DE genes in TCA cycles and oxidative phosphorylation. Gene symbols, full gene name and fold change values were displayed. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3665758_d2.v1
title: Additional file 2: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

description: List of entire 2464 DE genes in the comparison of PeM and BPR. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.c.3665758_d2
title: Additional file 2: of RNA sequencing for global gene expression associated with muscle growth in a single male modern broiler line compared to a foundational Barred Plymouth Rock chicken line

description: List of entire 2464 DE genes in the comparison of PeM and BPR. (XLSX 141 kb)
DOI: 10.6084/m9.figshare.c.3665737_d7
title: Additional file 10: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in MCF-7/Twist primary tumors and MCF-7/Twist lung metastases. Probe sets are ranked by fold change. (XLSX 740Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d7.v1
title: Additional file 10: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in MCF-7/Twist primary tumors and MCF-7/Twist lung metastases. Probe sets are ranked by fold change. (XLSX 740Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d10
title: Additional file 3: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of probe sets expressed multi-directionally in all three groups. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d11.v1
title: Additional file 14: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in both MCF-7/Twist cells and MCF-7/Twist primary tumors. Probe sets are ranked by fold change. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d11
title: Additional file 14: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets up and down-regulated in both MCF-7/Twist cells and MCF-7/Twist primary tumors. Probe sets are ranked by fold change. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3665737_d12.v1
title: Additional file 8: of Genomic pathways modulated by Twist in breast cancer

description: Ranked list of significant probe sets differentially expressed in MCF-7/Twist lung metastases. Probe sets are ranked by fold change. (XLSX 734Â kb)
DOI: 10.15468/dl.rgweue
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mesosaurus tenuidens Gervais, 1865"
 ]
}

 The dataset's 3 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038077-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3665827_d1.v1
title: Additional file 2: Table S2. of Microbiota fingerprints lose individually identifying features over time

description: OTU table. Final OTU table generated from the sequencing data, following all quality control steps. ‘Count’ gives the number of reads for a given OTU identified in a given sample. For skin samples, indicator value, indicator p value, and whether the OTU was a member of a hitting set for that individual in that season are indicated. ‘NA’ values indicate properties not relevant to a given sample (e.g. air samples are not associated with an individual). (TSV 30906 kb)
DOI: 10.6084/m9.figshare.c.3665827_d1
title: Additional file 2: Table S2. of Microbiota fingerprints lose individually identifying features over time

description: OTU table. Final OTU table generated from the sequencing data, following all quality control steps. ‘Count’ gives the number of reads for a given OTU identified in a given sample. For skin samples, indicator value, indicator p value, and whether the OTU was a member of a hitting set for that individual in that season are indicated. ‘NA’ values indicate properties not relevant to a given sample (e.g. air samples are not associated with an individual). (TSV 30906 kb)
DOI: 10.6084/m9.figshare.c.3665833_d1.v1
title: Additional file 4: of Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

description: List of top twenty genes in the network of associated genes derived from sorghum gene network porvided by Makita et al. [51]. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3665845_d3.v1
title: Additional file 3: of Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species

description: Classification of genotyped samples. (ODS 136 kb)
DOI: 10.6084/m9.figshare.c.3665845_d3
title: Additional file 3: of Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species

description: Classification of genotyped samples. (ODS 136 kb)
DOI: 10.6084/m9.figshare.c.3665863_d1.v1
title: MOESM1 of Interpreting vertical movement behavior with holistic examination of depth distribution: a novel method reveals cryptic diel activity patterns of Chinook salmon in the Salish Sea

description: Additional file 1. Gamma-Dirichlet (Arostegui et al.).R Gamma-Dirichlet Method Code: This is the R code we utilized to analyze our binned detection data with the Gamma-Dirichlet method. It utilizes our dataset, provided in additional file 2, to fit and compare the models.
DOI: 10.6084/m9.figshare.c.3665866_d1.v1
title: MOESM1 of Taxonomy of Cyrtochilum-alliance (Orchidaceae) in the light of molecular and morphological data

description: Additional file 1: Appendix S1. Specimens of Cyrtochilum s.l. and Odontoglossum examined during the studies.
DOI: 10.6084/m9.figshare.c.3665833_d5
title: Additional file 2: of Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

description: Phenotypic measurements of seedling upon heat and cold stress on 300 sorghum association panel. (XLSX 50Â kb)
DOI: 10.6084/m9.figshare.c.3665866_d1
title: MOESM1 of Taxonomy of Cyrtochilum-alliance (Orchidaceae) in the light of molecular and morphological data

description: Additional file 1: Appendix S1. Specimens of Cyrtochilum s.l. and Odontoglossum examined during the studies.
DOI: 10.6084/m9.figshare.c.3665863_d1
title: MOESM1 of Interpreting vertical movement behavior with holistic examination of depth distribution: a novel method reveals cryptic diel activity patterns of Chinook salmon in the Salish Sea

description: Additional file 1. Gamma-Dirichlet (Arostegui et al.).R Gamma-Dirichlet Method Code: This is the R code we utilized to analyze our binned detection data with the Gamma-Dirichlet method. It utilizes our dataset, provided in additional file 2, to fit and compare the models.
DOI: 10.6084/m9.figshare.c.3665833_d6
title: Additional file 3: of Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

description: Validation of SNPs in nine sorghum lines to determine the haplotypes for cold tolerance. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3665863_d2.v1
title: MOESM2 of Interpreting vertical movement behavior with holistic examination of depth distribution: a novel method reveals cryptic diel activity patterns of Chinook salmon in the Salish Sea

description: Additional file 2. Binned_Detection_Data (Arostegui et al.).csv. Binned Detection Data: This is the dataset we utilized in the manuscript and analyzed with the Gamma-Dirichlet method. It consists of the four individual Chinook salmon depth distributions from each season/diel period.
DOI: 10.6084/m9.figshare.c.3665863_d2
title: MOESM2 of Interpreting vertical movement behavior with holistic examination of depth distribution: a novel method reveals cryptic diel activity patterns of Chinook salmon in the Salish Sea

description: Additional file 2. Binned_Detection_Data (Arostegui et al.).csv. Binned Detection Data: This is the dataset we utilized in the manuscript and analyzed with the Gamma-Dirichlet method. It consists of the four individual Chinook salmon depth distributions from each season/diel period.
DOI: 10.6084/m9.figshare.c.3665911_d1.v1
title: Additional file 5: Table S2. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: Percent of amino acid sequence identity/similarity of the fish Angptl family members with the human orthologues. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3665911_d2.v1
title: Additional file 9: Table S5. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: Accession numbers of the fish, tetrapod and cephalochordate Angpt genes and transcripts. ni-not identified. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3665911_d1
title: Additional file 5: Table S2. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: Percent of amino acid sequence identity/similarity of the fish Angptl family members with the human orthologues. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3665911_d2
title: Additional file 9: Table S5. of Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration

description: Accession numbers of the fish, tetrapod and cephalochordate Angpt genes and transcripts. ni-not identified. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3665944_d1.v1
title: Additional file 2: of Widespread introgression in deep-sea hydrothermal vent mussels

description: Table S2. Frequencies of the B. azoricus-specific SNP allele in the eight sampled mussel populations; Table S3. SNP genotype and ND4 haplotype data for each individual of the 8 sampled localities. 1 = c54079_g1_i1, 2 = c59751_g2_i3, 3 = c12535_g1_i1, 4 = c36135_g1_i2, 5 = c40452_g1_i1, 6 = c61080_g8_i1, 7 = c62359_g8_i4, 8 = c23539_g1_i1, 9 = c34434_g1_i1, 10 = c41151_g1_i3, 11 = c58708_g7_i1, 12 = c55170_g1_i1, 13 = c47041_g1_i1, 14 = c29533_g1_i1, 15 = c61290_g11_i1, 16 = c59181_g1_i1, 17 = c42562_g1_i1, 18 = c35975_g1_i1; Table S4. Fluidigm primer information (5′ to 3′) and putative gene functions of the 18 SNP loci investigated in this study. ASP1 = SNP allele detected with allele-specific primer 1, ASP2 = SNP allele detected with allele-specific primer 2, SNP_SEQ = sequence of the amplified fragment containing the SNP, ASP1_SEQ = sequence of allele-specific primer 1, ASP2_SEQ = sequence of allele-specific primer 2, LSP_SEQ = sequence of locus-specific reverse primer, STA_SEQ = sequence of forward primer for specific target amplification, AMP_GC = proportional GC content, REFSEQ = blast annotation in the RefSeq protein database, SWISSPROT = blast annotation in the Swiss-Prot database, TREMBL = blast annotation in the TrEMBL database. (XLSX 37 kb)