cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27170980.v1
title: Network embedding-based directed community detection with unknown community number

description: Community detection of network analysis plays an important role in numerous application areas, in which estimating the number of communities is a fundamental issue. However, many existing methods focus on undirected networks ignoring the directionality of edges or unrealistically assume that the number of communities is known a priori. In this article, we develop a data-dependent community detection method for the directed network to determine the number of communities and recover community structures simultaneously, which absorbs the ideas of network embedding and penalized fusion by embedding the out- and in-nodes into low-dimensional vector space and forcing the embedding vectors towards its center. The asymptotic consistency properties of the proposed method are established in terms of network embedding, directed community detection, and estimation of the number of communities. The proposed method is applied on synthetic networks and real brain functional networks, which demonstrate the superior performance of the proposed method against a number of competitors.
DOI: 10.15468/dl.bsam3a
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Puma concolor (Linnaeus, 1771)",
 "Year 2020-2024"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020480-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12518255
title: Code and data for Oxygen dimerization as a defect-driven process in bulk LiNiO2

description: Data and code required to generate figures in the article "Oxygen dimerization as a defect-driven process in bulk LiNiO2".Available as a preprint at 10.26434/chemrxiv-2024-lcmk
DOI: 10.5281/zenodo.12518256
title: Code and data for Oxygen dimerization as a defect-driven process in bulk LiNiO2

description: Data and code required to generate figures in the article "Oxygen dimerization as a defect-driven process in bulk LiNiO2".Available as a preprint at 10.26434/chemrxiv-2024-lcmk
DOI: 10.15468/dl.tb994f
title: Occurrence Download

description: A dataset containing 2934 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrenophora Fr., 1849"
 ]
}

 The dataset includes 2934 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020482-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcqn8f
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-54.4218 -29.78571,-47.25784 -29.78571,-47.25784 -25.49924,-54.4218 -25.49924,-54.4218 -29.78571))",
 "HasCoordinate is true",
 "TaxonKey is Jabiru mycteria (Lichtenstein, 1819)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020484-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n588ta
title: Occurrence Download

description: A dataset containing 7462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Royal Netherlands Institute for Sea Research (NIOZ) - Kom Fyke Mokbaai",
 "TaxonKey is Merlangius merlangus (Linnaeus, 1758)"
 ]
}

 The dataset includes 7462 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020483-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9t9sh8
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Peru",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 97 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020485-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b69dhg
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is Balaenoptera brydei Olsen, 1913"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020486-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27846741
title: Geometry Optimisation - XYZ Files

description: Optimised structures after DFT with periodic boundary conditions.
DOI: 10.15468/dl.cbw8g6
title: Occurrence Download

description: A dataset containing 2412 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micronia aculeata Guenée, 1857"
 ]
}

 The dataset includes 2412 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020487-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ceh46a
title: Occurrence Download

description: A dataset containing 71240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Microtus pennsylvanicus (Ord, 1815), Microtus drummondi (Audubon & Bachman, 1854), Microtus pennsylvanicus dukecampbelli Woods, Post & Kilpatrick, 1982)"
 ]
}

 The dataset includes 71240 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020481-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h94tkt
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Filinia longiseta (Ehrenberg, 1834)"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020488-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27411345
title: Zipped Hotspot object .pkl file

description: This is the Hotspot object .pkl file that is created when you run the Hotspot algorithm. It is provided here so that Hotspot doesn't need to be run repeatedly for downstream analyses. You can load it into Python for subsequent analysis.
DOI: 10.6084/m9.figshare.27411345.v1
title: Zipped Hotspot object .pkl file

description: This is the Hotspot object .pkl file that is created when you run the Hotspot algorithm. It is provided here so that Hotspot doesn't need to be run repeatedly for downstream analyses. You can load it into Python for subsequent analysis.
DOI: 10.15468/dl.84qj2w
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mimomyia elegans (Taylor, 1914)"
 ]
}

 The dataset includes 161 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020489-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tqdnx
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mammalia",
 "Geometry MULTIPOLYGON (((142.36 -29.01, 142.36 -29.39, 142.74 -29.39, 142.74 -29.01, 142.36 -29.01)))"
 ]
}

 The dataset includes 27 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020490-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26166640
title: 332 Yeasts Annotations

description: This repository contains annotations of predicted protein-coding genes in the genome assemblies of 332 yeast species belonging to the subphylum Saccaromycotina, underlying analyses in the publication: Crandall, J.G., Zhou, X. Rokas, A., and Hittinger, C.T. "Specialization restricts the evolutionary paths available to yeast sugar transporters." In press, https://doi.org/10.1093/molbev/msae228
DOI: 10.15468/dl.b9z9hr
title: Occurrence Download

description: A dataset containing 4525 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hesperis laciniata All."
 ]
}

 The dataset includes 4525 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020491-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nqs6w
title: Occurrence Download

description: A dataset containing 78599 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colaptes auratus (Linnaeus, 1758)",
 "Year 1960-1981"
 ]
}

 The dataset includes 78599 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004908-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18150/uy9bcg
title: Trendy konsumenckie w wyborze mięsa drobiowego: preferencje, kryteria i wybory

description: Plik zawiera zebrane wyniki ankiety konsumenckiej przeprowadzone na grupie dobrowolnych respondentów. Dotyczy kryteriów wybory zakupu mięsa drobiowego oraz wiedzy na temat jadalnych opakowań
DOI: 10.6084/m9.figshare.28397960
title: Genome assemblies of 12 rice inbred lines.

description: Draft genomes of the 12 rice inbred lines were assembled using HiFi reads with parameter -l3 via HiFiasm (v0.19.5). De novo genome assemblies of two representative ILs, YB and Balilla, were performed with the aid of Hi-C data, yielding an average sequencing depth at 127.80×. The clean Hi-C reads for YB and Balilla were aligned to contigs using Juicer (v1.6). Contact matrices were generated with 3D-DNA (v180922, -r0), and corrections were applied using JuiceBox (v1.11.08). The genomes at the chromosome level of the remained 10 ILs were assembled based on one of these two reference genomes using Ragtag (v2.1.0, scaffold). We assessed the accuracy, identity, and completeness of the 12 assemblies. The completeness of the assemblies was assessed using Benchmarking Universal Single-Copy Orthologue (v3.0.2, embryophyta_odb10) analysis. The long terminal repeats (LTR) assembly index (LAI) was calculated for each chromosome using LTR tools, including LTR_retriever (v2.9.0, -infinder ltrfinder.scn -inharvest ltrharvest.scn), LTR_FINDER (v1.0.7, -D 15000 -L 7000 -C -M 0.7), and GenomeTools (v1.6.2, ltrharvest -similar 70 -vic 10 -seed 20 -seqids yes -maxlenltr 7000 -maxtsd 6). HiFi reads were re-mapped to the assemblies with parameters “-ax map-hifi” using Minimap2 (v2.21).
DOI: 10.6084/m9.figshare.28397960.v1
title: Genome assemblies of 12 rice inbred lines.

description: Draft genomes of the 12 rice inbred lines were assembled using HiFi reads with parameter -l3 via HiFiasm (v0.19.5). De novo genome assemblies of two representative ILs, YB and Balilla, were performed with the aid of Hi-C data, yielding an average sequencing depth at 127.80×. The clean Hi-C reads for YB and Balilla were aligned to contigs using Juicer (v1.6). Contact matrices were generated with 3D-DNA (v180922, -r0), and corrections were applied using JuiceBox (v1.11.08). The genomes at the chromosome level of the remained 10 ILs were assembled based on one of these two reference genomes using Ragtag (v2.1.0, scaffold). We assessed the accuracy, identity, and completeness of the 12 assemblies. The completeness of the assemblies was assessed using Benchmarking Universal Single-Copy Orthologue (v3.0.2, embryophyta_odb10) analysis. The long terminal repeats (LTR) assembly index (LAI) was calculated for each chromosome using LTR tools, including LTR_retriever (v2.9.0, -infinder ltrfinder.scn -inharvest ltrharvest.scn), LTR_FINDER (v1.0.7, -D 15000 -L 7000 -C -M 0.7), and GenomeTools (v1.6.2, ltrharvest -similar 70 -vic 10 -seed 20 -seqids yes -maxlenltr 7000 -maxtsd 6). HiFi reads were re-mapped to the assemblies with parameters “-ax map-hifi” using Minimap2 (v2.21).
DOI: 10.15468/dl.r2hqh5
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Actinidia styracifolia C.F.Liang"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024892-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14850871
title: GNSS L1 Jammed Signal 10MHz Recording - Linear Narrow (Part 1)

description: This gzip file contains I-Q data dump of Jammed GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHzJamming signal: Linear NarrowJamming power: 85, 80, 75, 70, 65

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.5281/zenodo.14850872
title: GNSS L1 Jammed Signal 10MHz Recording - Linear Narrow (Part 1)

description: This gzip file contains I-Q data dump of Jammed GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHzJamming signal: Linear NarrowJamming power: 85, 80, 75, 70, 65

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.18150/vcsxsi
title: ANKIETA PANELU SENSORYCZNEGO TESTUJĄCEGO MIĘSO DROBIOWE OPAKOWANE W FILMU CHITOZANOWY

description: Plik zawiera przykładową ankietę wypełnioną przez panelistów biorących udział w sesjach konsumenckich/sensorycznych mięsa drobiowego oraz mięsa drobiowego zabezpieczanego jadalnymi filmami.
DOI: 10.5281/zenodo.14851084
title: GNSS L1 Jammed Signal 10MHz Recording - Linear Narrow (Part 2)

description: These gzip files contain dumps of Jammed GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHzJamming signal: Linear NarrowJamming power: 60, 55

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.5281/zenodo.14851085
title: GNSS L1 Jammed Signal 10MHz Recording - Linear Narrow (Part 2)

description: These gzip files contain dumps of Jammed GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHzJamming signal: Linear NarrowJamming power: 60, 55

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.5281/zenodo.14851183
title: GNSS L1 Clean Signal 10MHz Recording

description: These gzip files contain I-Q data dump of Clean GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHz

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.5281/zenodo.14851184
title: GNSS L1 Clean Signal 10MHz Recording

description: These gzip files contain I-Q data dump of Clean GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHz

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.5281/zenodo.14851310
title: GNSS L1 Jammed Signal 10MHz Recording - Linear Wide Fast (Part 1)

description: These gzip files contain I-Q data dumps of Jammed GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHzJamming signal: Linear Wide FastJamming power: 85, 80, 75, 70, 65

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.5281/zenodo.14851311
title: GNSS L1 Jammed Signal 10MHz Recording - Linear Wide Fast (Part 1)

description: These gzip files contain I-Q data dumps of Jammed GNSS signal with the following characteristics:GNSS Band: L1Sample frequency: 10 MHzJamming signal: Linear Wide FastJamming power: 85, 80, 75, 70, 65

This project has received funding from the European Union’s Horizon Europe Research and Innovation Programme under the Grant Agreement No. 101073909.
DOI: 10.6084/m9.figshare.26621659.v1
title: Additional file 8 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.26621662
title: Additional file 9 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26621662.v1
title: Additional file 9 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.26621665
title: Additional file 10 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.26621665.v1
title: Additional file 10 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 10
DOI: 10.6084/m9.figshare.26621668
title: Additional file 11 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 11
DOI: 10.6084/m9.figshare.26621668.v1
title: Additional file 11 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 11
DOI: 10.6084/m9.figshare.26621671
title: Additional file 12 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 12
DOI: 10.6084/m9.figshare.26621671.v1
title: Additional file 12 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 12
DOI: 10.6084/m9.figshare.26621674
title: Additional file 13 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 13
DOI: 10.6084/m9.figshare.26621674.v1
title: Additional file 13 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 13
DOI: 10.6084/m9.figshare.26627986
title: Additional file 10 of Differential expression of zinc finger CCHC-type superfamily proteins in thyroid carcinoma and their associations with tumor immunity

description: Supplementary Material 10: Table S10. Raw data of RT-PCR
DOI: 10.6084/m9.figshare.26621677
title: Additional file 14 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 14
DOI: 10.6084/m9.figshare.26621677.v1
title: Additional file 14 of Next-generation fungal identification using target enrichment and Nanopore sequencing

description: Supplementary Material 14
DOI: 10.6084/m9.figshare.26621689
title: Additional file 6 of Dissection of paracrine/autocrine interplay in lung tumor microenvironment mimicking cancer cell-monocyte co-culture models reveals proteins that promote inflammation and metastasis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26621692.v1
title: Additional file 7 of Dissection of paracrine/autocrine interplay in lung tumor microenvironment mimicking cancer cell-monocyte co-culture models reveals proteins that promote inflammation and metastasis

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.26621689.v1
title: Additional file 6 of Dissection of paracrine/autocrine interplay in lung tumor microenvironment mimicking cancer cell-monocyte co-culture models reveals proteins that promote inflammation and metastasis

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.26621692
title: Additional file 7 of Dissection of paracrine/autocrine interplay in lung tumor microenvironment mimicking cancer cell-monocyte co-culture models reveals proteins that promote inflammation and metastasis

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.24234179.v1
title: Additional file 1 of EDOF intraocular lens design: shift in image plane vs object vergence

description: Additional file 1.
DOI: 10.6084/m9.figshare.24234179
title: Additional file 1 of EDOF intraocular lens design: shift in image plane vs object vergence

description: Additional file 1.
DOI: 10.15468/dl.cjrg5n
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron eudoxum Balf.fil. & Forrest"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069865-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24234125
title: Additional file 1 of Antimicrobial peptide Mastoparan X has good activity against Escherichia coli in vitro and alleviates its pathogenicity in mice

description: Additional file 1: S Fig. 1. The effects of MPX on intestinal pathology. A: H&E staining of the lung after E. coli infection in mice. B: H&E staining of the liver after E. coli infection in mice. C: H&E staining of the spleen after E. coli infection in mice.
DOI: 10.6084/m9.figshare.24234125.v1
title: Additional file 1 of Antimicrobial peptide Mastoparan X has good activity against Escherichia coli in vitro and alleviates its pathogenicity in mice

description: Additional file 1: S Fig. 1. The effects of MPX on intestinal pathology. A: H&E staining of the lung after E. coli infection in mice. B: H&E staining of the liver after E. coli infection in mice. C: H&E staining of the spleen after E. coli infection in mice.
DOI: 10.15468/dl.jcgpry
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.245983 -33.880656, 148.245983 -33.887393, 148.243737 -33.887393, 148.243737 -33.891885, 148.245983 -33.891885, 148.245983 -33.898622, 148.243737 -33.898622, 148.243737 -33.900868, 148.250474 -33.900868, 148.250474 -33.898622, 148.25272 -33.898622, 148.25272 -33.89413, 148.254966 -33.89413, 148.254966 -33.891885, 148.259458 -33.891885, 148.259458 -33.885147, 148.254966 -33.885147, 148.254966 -33.880656, 148.25272 -33.880656, 148.25272 -33.885147, 148.250474 -33.885147, 148.250474 -33.880656, 148.245983 -33.880656))"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069866-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.