cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/24977745
title: merops_annotations.txt

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/24977745.v1
title: merops_annotations.txt

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.21227/z90k-b159
title: PGRC_DATA

description: Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.Path information in knowledge graphs can provide explicit explanations for recommendation decisions, thus becoming a focus in explainable recommendation research.
DOI: 10.48606/49
title: Datasets for "Penetration Coefficients of Commercial Nanolimes and a Liquid Mineral Precursor into Pore-Imitating Test Systems"

description: This is the parent data package for the data associated with the journal article "Penetration Coefficients of Commercial Nanolimes and a Liquid Mineral Precursor into Pore-Imitating Test Systems - Predictability of Infiltration Behavior", which was published in MDPI Materials in 2023 (DOI 10.3390/ma16062506). The data is structured into multiple packages: The properties of the liquids and materials used in the paper for the calculation of penetration coefficients using the Washburn equation are part of one package (“Experimental Properties of Water, Ethanol, iso-Propanol, 4 Commercial Nanolimes, and a Complex Coacervate”, DOI 10.48606/48). This includes densities, viscosities, rheometry data, surface tension measurement results, and contact angles. The recorded light microscopy infiltration time series in microfluidic devices made of PMMA (“Infiltration into PMMA – Light Microscopy Data”, DOI 10.48606/47) or PDMS (“Infiltration into PDMS – Light Microscopy Data”, DOI 10.48606/46) are provided as one separate data package for each material. The light microcopy data is provided in the original .czi format provided directly from the Zeiss light microscope in its entirety, as well as extracted csv files containing meniscus position vs. time data, plus video files for your convenience. Please see the readme file for more detailed overview information.
DOI: 10.48606/48
title: Experimental Properties of Water, Ethanol, iso-Propanol, 4 Commercial Nanolimes, and a Complex Coacervate

description: This data package is part of the parent data package “Datasets for “Penetration Coefficients of Commercial Nanolimes and a Liquid Mineral Precursor into Pore-Imitating Test Systems”” (DOI 10.48606/49) belonging to the open access journal publication “Penetration Coefficients of Commercial Nanolimes and a Liquid Mineral Precursor into Pore-Imitating Test Systems - Predictability of Infiltration Behavior", which was published in MDPI Materials in 2023 (DOI 10.3390/ma16062506). It contains data from physicochemical characterization measurements for water, ethanol, iso-propanol, four different commercial nanolime formulations, and a liquid mineral precursor based on complex coacervation; as well as polymethylmethacrylate (PMMA) and polydimethylsiloxane (PDMS). For more detailed information, please see the overview README file for the experimental data.
DOI: 10.34740/kaggle/dsv/7375642
title: Amazon Rainforest Deforestation Dataset
DOI: 10.5281/zenodo.10487308
title: test

description: xxx
DOI: 10.48606/47
title: Infiltration into PMMA - Light Microscopy Data

description: This data package is part of the parent data package “Datasets for “Penetration Coefficients of Commercial Nanolimes and a Liquid Mineral Precursor into Pore-Imitating Test Systems”” (DOI 10.48606/49) belonging to the open access journal publication “Penetration Coefficients of Commercial Nanolimes and a Liquid Mineral Precursor into Pore-Imitating Test Systems - Predictability of Infiltration Behavior", which was published in MDPI Materials in 2023 (DOI 10.3390/ma16062506). It contains all data related to the infiltration of water, ethanol, iso-propanol, four different commercial nanolime formulations, and a liquid mineral precursor based on complex coacervation into polymethylmethacrylate (PMMA) microfluidic devices. In particular, original light microcopy infiltration time series data in .czi file format, as well as videos of the infiltrations as .avi files, and .csv files of the meniscus position vs. time data extracted from the .czi files using ImageJ (FIJI; Schindelin, J., Arganda-Carreras, I., Frise, E. et al. Fiji: an open-source platform for biological-image analysis. Nat Methods 9, 676–682 (2012), DOI 10.1038/nmeth.2019) and an ImageJ (FIJI) Makro provided by the Bio-Imaging Center of the University of Konstanz (Stöckl, M.T. Liquid Meniscus Tracking ImageJ Macro. Zenodo 2022, DOI 10.5281/zenodo.6385179). Please see the readme file for more details.
DOI: 10.6084/m9.figshare.21670883.v1
title: Cooper Consistent Patterns of Common Species Across Tropical Forest Tree Communities

description: Species abundance data from tropical forest inventory plots in Africa, Amazonia, and Southeast Asia detailing the number of trees greater than or equal to 10cm diameter at breast height of each species (names redacted) in each plot (plot details redacted aside from plot sizes in ha). Columns (after plot area) are species, rows are plots, entries are number of trees greater than or equal to 10cm diameter at breast height of the column species in the row plot.
DOI: 10.6084/m9.figshare.21670883
title: Cooper Consistent Patterns of Common Species Across Tropical Forest Tree Communities

description: Species abundance data from tropical forest inventory plots in Africa, Amazonia, and Southeast Asia detailing the number of trees greater than or equal to 10cm diameter at breast height of each species (names redacted) in each plot (plot details redacted aside from plot sizes in ha). Columns (after plot area) are species, rows are plots, entries are number of trees greater than or equal to 10cm diameter at breast height of the column species in the row plot.
DOI: 10.6084/m9.figshare.24501241
title: Dynamic resonance fluorescence in solid-state cavity quantum electrodynamics

description: Source date in .mat format and matlab scripts for preparing the figures in the main text and Extended data section.
DOI: 10.18154/rwth-2023-12110
title: Dataset to "Exploring the Impact of Ambient and Character Sounds on Player Experience in Video Games"

description: This data is analysed and reported in the publication "Exploring the Impact of Ambient and Character Sounds on Player Experience in Video Games". The study examines the influence of character and ambient sounds on immersion, avatar identification, fun, and perceived competence. In two experiments, participants played League of Legends under four different sound conditions. In the first experiment participants were instructed to concentrate on their performance, while in the second experiment they were free to explore the game map.
DOI: 10.5281/zenodo.10487268
title: test

description: xxx
DOI: 10.5281/zenodo.10487269
title: test

description: xxx
DOI: 10.6084/m9.figshare.24800124.v1
title: Cobalt-Free Composite-Structured Cathodes with Lithium-Stoichiometry Control for Sustainable Lithium-ion Batteries

description: Original data for the main figures
DOI: 10.6084/m9.figshare.24800124
title: Cobalt-Free Composite-Structured Cathodes with Lithium-Stoichiometry Control for Sustainable Lithium-ion Batteries

description: Original data for the main figures
DOI: 10.6084/m9.figshare.22684288.v1
title: Towards provably efficient quantum algorithms for large-scale machine learning models

description: Data for "Towards provably efficient quantum algorithms for large-scale machine-learning models". Error.txt includes the error proxy estimated due to Carleman linearization. The estimates are obtained using Hessian eigenvalues. Hessians.zip contains hessian eigenvalue grids and densities. Most files are for the 7 M parameter mode, and resnet_422-4-* are for the 103 M parameter model. Accuracy.txt contains the sparse training model accuracy on classifying the test set with CIFAR-100, as well as the loss values. Hessian_vrification.ipynb contains the code to generate the supplementary verification of Hessian eigenvalues on the error properties of Carleman linearization plots. The initial conditions are random.
DOI: 10.6084/m9.figshare.22684288
title: Towards provably efficient quantum algorithms for large-scale machine learning models

description: Data for "Towards provably efficient quantum algorithms for large-scale machine-learning models". Error.txt includes the error proxy estimated due to Carleman linearization. The estimates are obtained using Hessian eigenvalues. Hessians.zip contains hessian eigenvalue grids and densities. Most files are for the 7 M parameter mode, and resnet_422-4-* are for the 103 M parameter model. Accuracy.txt contains the sparse training model accuracy on classifying the test set with CIFAR-100, as well as the loss values. Hessian_vrification.ipynb contains the code to generate the supplementary verification of Hessian eigenvalues on the error properties of Carleman linearization plots. The initial conditions are random.
DOI: 10.6084/m9.figshare.24647937.v1
title: Synthesis of core@shell catalysts guided by Tammann temperature

description: Designing high-performance thermal catalysts with stable catalytic sites is an important challenge. Conventional wisdom holds that strong metal-support interactions can benefit the catalyst performance, but there is a knowledge gap in generalizing this effect across different metals. Here, we have successfully developed a generalizable strong metal-support interaction strategy guided by Tammann temperatures of materials, enabling functional oxide encapsulation of transition metal nanocatalysts. As an illustrative example, Co@BaAl2O4 core@shell is synthesized and tracked in real-time through in-situ microscopy and spectroscopy, revealing an unconventional strong metal-support interaction encapsulation mechanism. Notably, Co@BaAl2O4 exhibits exceptional activity relative to previously reported core@shell catalysts, displaying excellent long-term stability during high-temperature chemical reactions and overcoming the durability and reusability limitations of conventional supported catalysts. This pioneering design and widely applicable approach has been validated to guide the encapsulation of various transition metal nanoparticles for environmental tolerance functionalities, offering great potential to advance energy, catalysis, and environmental fields.
DOI: 10.6084/m9.figshare.24647937
title: Synthesis of core@shell catalysts guided by Tammann temperature

description: Designing high-performance thermal catalysts with stable catalytic sites is an important challenge. Conventional wisdom holds that strong metal-support interactions can benefit the catalyst performance, but there is a knowledge gap in generalizing this effect across different metals. Here, we have successfully developed a generalizable strong metal-support interaction strategy guided by Tammann temperatures of materials, enabling functional oxide encapsulation of transition metal nanocatalysts. As an illustrative example, Co@BaAl2O4 core@shell is synthesized and tracked in real-time through in-situ microscopy and spectroscopy, revealing an unconventional strong metal-support interaction encapsulation mechanism. Notably, Co@BaAl2O4 exhibits exceptional activity relative to previously reported core@shell catalysts, displaying excellent long-term stability during high-temperature chemical reactions and overcoming the durability and reusability limitations of conventional supported catalysts. This pioneering design and widely applicable approach has been validated to guide the encapsulation of various transition metal nanoparticles for environmental tolerance functionalities, offering great potential to advance energy, catalysis, and environmental fields.
DOI: 10.6084/m9.figshare.24915963.v1
title: Oxophilic Ce single atoms-triggered active sites reverse for superior alkaline hydrogen evolution

description: This file contains the raw data for the work "Oxophilic Ce single atoms-triggered active sites reverse for superior alkaline hydrogen evolution".
DOI: 10.6084/m9.figshare.24915963
title: Oxophilic Ce single atoms-triggered active sites reverse for superior alkaline hydrogen evolution

description: This file contains the raw data for the work "Oxophilic Ce single atoms-triggered active sites reverse for superior alkaline hydrogen evolution".
DOI: 10.6084/m9.figshare.24085956.v1
title: UOF

description: MOF approach for U capture.
DOI: 10.6084/m9.figshare.24085956
title: UOF

description: MOF approach for U capture.
DOI: 10.6084/m9.figshare.24288718
title: Training for Security: a Replication Package

description: This replication package contains raw data on the security concerns found in some Web apps, along with an R script to run statistical tests.
DOI: 10.6084/m9.figshare.24288718.v2
title: Training for Security: a Replication Package

description: This replication package contains raw data on the security concerns found in some Web apps, along with an R script to run statistical tests.
DOI: 10.5281/zenodo.10487967
title: The raw data of Establishment of environmental DNA method for detecting invasive African-clawed frogs in Japan

description: The raw data of pond characteristics and eDNA detection rate for the paper, Takemoto, Doi, et al. "Establishment of environmental DNA method for detecting invasive African-clawed frogs in Japan"
DOI: 10.5281/zenodo.10487968
title: The raw data of Establishment of environmental DNA method for detecting invasive African-clawed frogs in Japan

description: The raw data of pond characteristics and eDNA detection rate for the paper, Takemoto, Doi, et al. "Establishment of environmental DNA method for detecting invasive African-clawed frogs in Japan"
DOI: 10.6084/m9.figshare.24980874
title: Raw Data_Did faculty development programs work? Determining factors of successful career development among clinical faculty: A database analysis study

description: Raw Data_Did faculty development programs work? Determining factors of successful career development among clinical faculty: A database analysis study
DOI: 10.6084/m9.figshare.24980853
title: DATA

description: This is the data for anti-sepsis of an extract of Melicope pteleifolia.
DOI: 10.6084/m9.figshare.24980853.v1
title: DATA

description: This is the data for anti-sepsis of an extract of Melicope pteleifolia.
DOI: 10.34740/kaggle/dsv/7382104
title: OnlineFree
DOI: 10.34740/kaggle/dsv/7382102
title: AutoXGB
DOI: 10.26165/juelich-data/huuklz
title: Atmospheric simulation chamber study: trans-2-hexene + O3 - Gas-phase oxidation - kinetic study - 2021-12-08

description: Eurochamp data: Atmospheric simulation chamber study: trans-2-hexene + O3 - Gas-phase oxidation - kinetic study - 2021-12-08
DOI: 10.5281/zenodo.10488100
title: Chronic Pain: Utility of an Eye-Tracker Integrated Stand-alone Performance Validity Test
DOI: 10.5281/zenodo.10488101
title: Chronic Pain: Utility of an Eye-Tracker Integrated Stand-alone Performance Validity Test
DOI: 10.5281/zenodo.10077869
title: Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens

description: Dataset and R script used in the study: "Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens".
DOI: 10.5281/zenodo.10488164
title: Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens

description: Dataset and R script used in the study: "Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens".
DOI: 10.5281/zenodo.8058417
title: Sperm production and allocation respond to perceived risk of sperm competition in the black soldier fly Hermetia illucens

description: Dataset and R script used in the study: "Sperm production and allocation respond to perceived risk of sperm competition in the black soldier fly Hermetia illucens".
DOI: 10.5281/zenodo.10078561
title: Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens

description: Dataset and R script used in the study: "Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens".
DOI: 10.5281/zenodo.8058416
title: Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens

description: Dataset and R script used in the study: "Sperm production and allocation in response to risks of sperm competition in the black soldier fly Hermetia illucens".
DOI: 10.6084/m9.figshare.24980901
title: Eukaryotic gene trees with 150 leaves

description: Dataset of 10 eukaryotic gene trees used to calculate the probability of a unique gene occurrence at the tips of a phylogenetic tree in the absence of horizontal gene transfer.
DOI: 10.6084/m9.figshare.24980901.v1
title: Eukaryotic gene trees with 150 leaves

description: Dataset of 10 eukaryotic gene trees used to calculate the probability of a unique gene occurrence at the tips of a phylogenetic tree in the absence of horizontal gene transfer.
DOI: 10.34740/kaggle/dsv/7382095
title: LUFlow Network Intrusion Detection Data Set
DOI: 10.6084/m9.figshare.24805806
title: Supplementary Material for: Systematic Review and Meta-Analysis of the Diagnostic Accuracy of the Sydney System for Reporting Lymph Node Fine-Needle Aspiration Biopsy in Diagnosing Malignancy

description: Introduction
To perform the first meta-analysis for assessment of the pooled risk of malignancy of each category of the Sydney system for reporting of lymph nodal aspirates along with evaluation of diagnostic accuracy. 
Methods
Pubmed/ MEDLINE and Embase were searched with the following keywords “(Lymph node) AND ("fine needle aspiration biopsy" OR FNAB) OR (International system OR Sydney system)” in the timeframe 2020 to August 04, 2023. The selected articles were assessed for risk of bias by the QUADAS-2 tool. The meta-analysis for sensitivity and specificity for each cut-off, that is, “Atypical considered positive,” “Suspicious of Malignancy considered positive,” and “Malignant considered positive” for the lesions was carried out after excluding the inadequate samples in each study. To assess the diagnostic accuracy, summary receiver operating characteristic (sROC) curves were constructed, and the diagnostic odds ratio (DOR) was pooled in both scenarios. 
Results
Nine studies, all of which were retrospective cross-sectional studies were evaluated with a total of 13205 cases. The sensitivity and specificity for the “Atypical and higher risk categories” considered as positive for malignancy were 97% (95% CI, 95%-99%), and 96% (95% CI, 91%-98%) respectively. The sensitivity and specificity for the “Suspicious for malignancy and higher risk categories” considered as positive for malignancy were 91% (95% CI, 85%-95%), and 99% (95% CI, 97%-100%) respectively. The sensitivity and specificity for the “Malignant” considered as positive for malignancy were 75% (95% CI, 65%-84%), and 100% (95% CI, 99%-100%) respectively. The pooled Area under the curve was 99-100% for each of the cut-offs. 
Conclusion
This meta-analysis highlights the accuracy of the Sydney system in reporting lymph node aspirates. It exhibits the significance of the “Suspicious” and “Malignant” categories in diagnosing malignancy and of the “ Benign” category in excluding malignancy.