cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3859896.v1
title: Techniques and Data: Field Sampling Frequency of Birds in a Specified Area

description: <b>Metadata: </b> <b>Replicates</b>: A total of 10 transect samples were randomly selected in both grassland and woodland locations to record the frequency of the number of bird sightings within the specified location. <b>Species</b>: Different types of birds observed <b>Frequency</b>: The number of times a bird was seen at the specified location that was marked by the transect. <b>Wind Speed</b>:<b> </b>Recorded in km/h by the weather network app and then converted into the Beaufort scale. <b>Distance</b>:<b> </b>An observed estimate of a bird’s distance to the ground according to the transect placed accordingly <b>Location</b>: Where the transect was placed and data was recorded <b>Method:</b> On September 26, 2016, at the York University grasslands and woodlots, a study was conducted with partners Moses and Numra. The study was performed at 3:00 to 4:30 pm on a rainy day with a temperature of 15°C. The study was on recording data based on the frequency of bird sightings within the specified area using a transect. The data that was collected was by randomly placing the transect in both woodlots and grassland locations and seeing what types of birds flew by and estimating their distance from the ground. A transect was placed on the ground at 9m for each replicate. The first five replicates took place in the grasslands while the last five replicates took place in the woodlots. For each replicate, a timed ten minutes was seen as appropriate to observe the birds flying. After the ten minutes, the wind speed, species, frequency, and distance was recorded. <b>Hypothesis:</b> If it is raining, there will be a decrease in the number of birds flying in the sky.
DOI: 10.6084/m9.figshare.5432116.v1
title: TsNAC1 ChIP-on-chip Peaks Data.zip

description: The peaks data of the candidate target genes of TsNAC1 in Arabidopsis.
DOI: 10.6084/m9.figshare.7683872.v4
title: Figure4

description: Broad H3K27me3 marks oncogene.
DOI: 10.6084/m9.figshare.28012640.v2
title: Supporting 2015 seed trait data for '<b>Germination response of desert annuals to shrub facilitation is species specific but not ecotypic</b>'.

description: Supporting seed trait data for the publication '<b>Germination response of desert annuals to shrub facilitation is species specific but not ecotypic</b>'. https://academic.oup.com/jpe/article/10/2/364/2623873Metadata are included as a .csv file in the data package. These data are specific to Figure 2 in the publication and include source, seed mass, and viability using Tz tests (tetrazolium). <br><br>
DOI: 10.17632/5xthvrbspc
title: Data on G-quadruplex topology, and binding ability of G-quadruplex forming sequences found in the promoter region of biomarker proteins and those relations to the presence of nuclear localization signal in the proteins

description: Aptamer is a nucleic acid ligand which specifically binds to its target molecule. It is typically obtained by an in vitro screening process called SELEX (Sequential Evolution of Ligands by Exponential Enrichment) [1, 2]. However, it sometimes fails to obtain aptamers because of PCR bias [3, 4] and the limited diversity of the random library [5]. To overcome the problems, we previously designed a SELEX-free aptamer identification method called “G-quadruplex (G4) promoter-derived aptamer selection (G4PAS)” [6]. In G4PAS procedure, putative G4 forming sequences (PQS) were explored in a promoter region of a target biomarker protein in human genomic DNA through computational analysis, and the identified DNA sequences were characterized as aptamer candidates towards the gene product encoded in the downstream of the promoter. As the characterization, the identified PQSs were chemically synthesized, and the binding ability was investigated by surface plasmon resonance (SPR) measurement and gel-shift assay. Also, the G4 topology of the obtained PQSs was investigated by circular dichroism measurement. Additionally, the presence of nuclear localization signal in the target protein was predicted in silico using web tools (NLSdb [7] and cNLS Mapper [8]). This data set summarized all the DNA sequences of PQSs, the dissociation constant (KD) obtained by SPR measurement, the results of gel-shift assay, and the results of nuclear localization signal prediction to address the possibility of binding of these PQS region to the target proteins in vivo. Those data should contribute to increase the success rate of G4PAS. Moreover, considering the G4 motifs in genomic DNA are suggested to be involved in in vivo gene regulation [9, 10], this data set is also potentially beneficial for the cell biology field. [1] C. Tuerk, L. Gold L, Science 249 (1990) 505–510. [2] A.D. Ellington, J.W. Szostak, Nature 346 (1990) 818–822. [3] M. Polz, C. Cavanaugh, Applied and Environmental Microbiology 64 (1998) 3724–3730. [4] T. Kanagawa, Journal of Bioscience and Bioengineering 96 (2003) 317–323. [5] S.J. Klug, M. Famulok, Molecular Biology Reports 20 (1994) 97–107. [6] W. Yoshida, T. Saito, T. Yokoyama, S. Ferri, K. Ikebukuro, PLoS ONE, 8 (2013) e65497. [7] R. Nair, P. Carter, B. Rost, Nucleic acids research 31 (2003) 397-399. [8] S. Kosugi, M. Hasebe, M. Tomita, H. Yanagawa, Proceedings of the National Academy of Sciences of the United States of America, 106 (2009) 10171-10176 [9] H. J. Lipps, D. Rhodes, Trends in Cell Biology, 19 (2009) 414-422. [10] D. Varshney, J. Spiegel, K. Zyner, D. Tannahill, S. Balasubramanian. Nature Reviews Molecular Cell Biology, 21 (2020) 259-474.
DOI: 10.6084/m9.figshare.12103614.v1
title: Caltech-101

description: Dataset Source:http://www.vision.caltech.edu/Image_Datasets/Caltech101/
DOI: 10.6084/m9.figshare.19879888.v1
title: Visual 3D Model file

description: A model template to be used in Visual 3D to create a full-body biomechanical model for each participant.
DOI: 10.6084/m9.figshare.3125773.v2
title: VineShedding_SW Ohio.csv

description: This dataset contains the site location, four letter species code for tree species (first two, genus; second two, species), diameter at breast height, and number of climbing lianas per tree. This work was conducted in the Great Miami River and Little Miami River watersheds of southwestern Ohio, United States.<br><br>Data forms the basis of the manuscript (Northeastern Naturalist): Exfoliating Bark Does Not Protect Platanus occidentalis L. From Root-Climbing Lianas. In press.<br><br>
DOI: 10.17632/fkhv222f29
title: NSCLC-derived exosomal hsa_circ_0003026

description: Raw data for hsa_circ_0003026
DOI: 10.6084/m9.figshare.26316550.v1
title: data.zip

description: Molecular species discrimination is significant where traditional taxonomic approaches fail. To overcome the limitations of conventionalbarcoding loci, plastid genome (plastome) and nuclear ribosomal DNA (nrDNA) sequencesrecovered from genome skimming,proposed as "super-barcodes," have been suggested as candidates for delimitating recently diverged species or complex plant groups. DNA super-barcodes must be assessed for their effectiveness in additional diverse plant species. In this research significant but taxonomically complex genus Codonpsis, complicated by the simple morphology and trends toward environmental plasticity. We analyzed multiple data sets, including standard DNA barcodes and super-barcodes, across 81 individuals from 36out of 42 species of Codonopsis from Asia.
DOI: 10.6084/m9.figshare.28765712.v1
title: Lipidomics Data

description: 1) Raw data2) Johnson transformed data3) Lipid Categories for correlation data4) Lipidomics volcano plot code5) Lipidomics Pearson's Rho heat map code6) Lipidomics Log 10 heat map FDR code7) Lipidomics Log 10 heat map fold change code
DOI: 10.6084/m9.figshare.28800404.v1
title: Nachusa Grasslands seed removal project 2025

description: These seed removal data were collected at 19 ReFUGE plots at Nachusa Grasslands in July and October 2024. 8 seeds of 7 species (list here) were placed cafeteria-style in buckets that allowed access to either invertebrates alone, or invertebrates and rodents. Plots vary in their management history (restoration age, bison presence, burn status for 2024).
DOI: 10.6084/m9.figshare.26303059.v1
title: RoSAR-share

description: This is the repository for the paper "Robust M-Estimation in Spatial Autoregressive Models: Algorithm and Applications".
DOI: 10.15468/dl.d3n85d
title: Occurrence Download

description: A dataset containing 1298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Eupithecia inturbata (Hübner)"
 ]
}

 The dataset includes 1298 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009391-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16635142.v1
title: SEM.pdf

description: Cross-section SEM micrographs of a fused silica substrate irradiated with a femtosecond laser at 6 different pulse energies and a multitude of deposited energy doses.
DOI: 10.6084/m9.figshare.21701939.v1
title: Supplementary Material for: Adolescence predatory risk alters social behaviors and cognitive ability and central oxytocin and vasopressin expression in adult Brandt’s voles

description: Introduction: Stress during adolescence causes long-term behavioral changes in adulthood. We previously found that adolescent exposure to predatory risk augments adolescent social contact and adult parental behavior in Brandt’s voles (Lasiopodomys brandtii). Methods: Here we determined whether this experience alters sexual behavior, pair-bond formation, and recognition ability, as well as basal HPA axis activity, central oxytocin (OT), and arginine-vasopressin (AVP) expression in adulthood. Results: In the social interaction test, repeated cat odor (CO) exposure enhanced the frequency of lordosis by female voles toward an unfamiliar opposite-sex conspecific. CO voles preferred to engage with their partners after 48 h cohabitation whereas the control groups did not, which may reflect stable pair bonds in the CO treatment group. Furthermore, adolescent exposure to CO inhibited novel object and place recognition ability, while it influenced social recognition only among adult males. No effect of adolescent CO exposure was observed for basal HPA axis activity, showing a habituation effect. Finally, we found that CO exposure increased OT and decreased AVP expression in the hypothalamus, including the paraventricular nucleus and anterior hypothalamus. The levels of OT in the medial amygdala were lower, and AVP in the lateral septum was higher in CO voles compared with the control. Discussion/Conclusion: These findings demonstrate that adolescent exposure to predator risk promotes adult reproductive behavior of Brandt’s voles. Deficits in recognition ability may necessitate alterations in reproductive strategies to enhance inclusive fitness. OT and AVP systems may play a modulatory role in the alteration of social behaviors elicited by adolescent predatory risk.
DOI: 10.6084/m9.figshare.7907957.v1
title: gVCF_HG03567

description: 1000 Genomes gVCF mapped to hs37d5 for HG03567. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/p6mb79zbm5
title: OpenCL parallel integration of ordinary differential equations: Applications in computational dynamics

description: Abstract In many physical problems the use of numerical simulations presents the only path to obtain insight into the behavior and evolution of the system of interest. GPU, CPU and MIC technologies are frequently employed for simulations on computational dynamics and we present results comparing different schemes for the numerical integration of ordinary differential systems (ODEs) in these architectures. The use of adapted methods with low memory storage (Low storage Runge–Kutta methods) gives good r... Title of program: OCL-TIDES, OCL-RK Catalogue Id: AEVW_v1_0 Nature of problem Solution of ODE problems in generic OpenCL environment oriented to large scale independent sets of initial conditions. Versions of this program held in the CPC repository in Mendeley Data AEVW_v1_0; OCL-TIDES, OCL-RK; 10.1016/j.cpc.2015.02.013 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.19375145.v1
title: Oral Health education flow diagram

description: Flow diagram
DOI: 10.6084/m9.figshare.21062974.v1
title: Gut Microbial Evidence Chain in High-salt diet Exacerbates Intestinal Aging

description: Aging is defined by the functional decrease of tissues and organs, as well as an increased risk of aging-related illnesses, all of which offer significant social concerns and public health priority.
DOI: 10.6084/m9.figshare.25103417.v1
title: Supplementary Material for: Deep Learning-Based Psoriasis Assessment: Harnessing Clinical Trial Imaging for Accurate PASI Prediction

description: Introduction: Image-based machine learning holds great promise for facilitating clinical care, however the datasets often used for model training differ from the interventional clinical trial-based findings frequently used to inform treatment guidelines. Here, we draw on longitudinal imaging of psoriasis patients undergoing treatment in the Ultima 2 clinical trial (NCT02684357), including 2,700 body images with psoriasis area severity index (PASI) annotations by uniformly trained dermatologists. 
Methods: An image-processing workflow integrating clinical photos of multiple body regions into one model pipeline was developed, which we refer to as the ‘One-Step PASI’ framework due to its simultaneous body detection, lesion detection, and lesion severity classification. Group-stratified cross-validation was performed with 145 deep convolutional neural network models combined in an ensemble learning architecture. 
Results: The highest-performing model demonstrated a mean absolute error of 3.3, Lin's concordance correlation coefficient of 0.86, and Pearson correlation coefficient of 0.90 across a wide range of PASI scores comprising disease classifications of clear skin, mild, and moderate-to-severe disease. Within-person, time-series analysis of model performance demonstrated that PASI predictions closely tracked the trajectory of physician scores from severe to clear skin without systematically over or underestimating PASI scores or percent changes from baseline. 
Conclusion: This study demonstrates the potential of image processing and deep learning to translate otherwise inaccessible clinical trial data into accurate, extensible machine learning models to assess therapeutic efficacy.
DOI: 10.6084/m9.figshare.5123326.v1
title: Supplementary Material for: Lipopolysaccharide Neutralization by Antimicrobial Peptides: A Gambit in the Innate Host Defense Strategy

description: Antimicrobial peptides (AMPs) are nowadays understood as broad multifunctional tools of the innate immune system to fight microbial infections. In addition to its direct antimicrobial action, AMPs can modulate the host immune response by promoting or restraining the recruitment of cells and chemicals to the infection focus. Binding of AMPs to lipopolysaccharide is a critical step for both their antimicrobial action and their immunomodulatory properties. On the one hand, removal of Gram-negative bacteria by AMPs can be an effective strategy to prevent a worsened inflammatory response that may lead to septic shock. On the other hand, by neutralizing circulating endotoxins, AMPs can successfully reduce nitric oxide and tumor necrosis factor-α production, hence preventing severe tissue damage. Furthermore, AMPs can also interfere with the Toll-like receptor 4 recognition system, suppressing cytokine production and contributing to modulate the inflammatory response. Here, we review the immune system strategies devised by AMPs to avoid an exacerbated inflammatory response and thus prevent a fatal end to the host.
DOI: 10.17632/wgmnfw8bg7
title: Appendix A. Supplementary data

description: Supplementary datasets related to this article are available in the online supplementary data.
DOI: 10.6084/m9.figshare.19499333.v1
title: patches and local annotations, slide 028, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.17632/72xhjkvjk2
title: Validez de un modelo de envejecimiento vascular acelerado como índice de riesgo cardiovascular en adultos sanos: análisis factorial confirmatorio. Estudio EVasCu.

description: En los últimos años, la predicción del riesgo cardiovascular ha constituido la base en las guías 
clínicas de prevención cardiovascular, generando evidencia científica respecto a la importancia de 
los profesionales de enfermería en el manejo del riesgo cardiovascular. El concepto de 
envejecimiento vascular acelerado representa un modelo potencialmente beneficioso para la 
investigación futura de los mecanismos fisiopatológicos que subyacen a las manifestaciones 
tempranas de la enfermedad cardiovascular. Por este motivo, los objetivos de este proyecto serán: 
verificar mediante un análisis factorial confirmatorio el concepto de envejecimiento vascular 
acelerado en un único factor, y generar una calculadora para estimar un índice con el modelo de 
mejor ajuste estableciendo niveles de alto, moderado y bajo riesgo de envejecimiento vascular 
acelerado para el cribado de riesgo de enfermedad cardiovascular en sujetos sanos. El estudio 
EVasCu tendrá un diseño transversal, se realizará en el Centro de Investigación de la Universidad 
y en Centros de Salud de la ciudad seleccionados, para el cual será necesaria una muestra de 
355 adultos sanos. Para examinar la validez de constructo de un modelo de un solo factor para 
medir el envejecimiento vascular acelerado, se examinarán diferentes modelos que incluyan 
parámetros vasculares, clínicos y bioquímicos para determinar qué variables de estos tres grupos 
muestran mejor ajuste. A partir del modelo que mejor ajuste muestre se generará una calculadora 
que estimará un índice de envejecimiento vascular acelerado, y los valores generados se 
categorizarán por este índice en tertiles para establecer niveles de alto, moderado y bajo riesgo de 
envejecimiento vascular acelerado.
DOI: 10.17632/3bnyzf7374
title: Dataset preguntas orientadoras para un estudio de diagnóstico en Educación Superior en Colombia.

description: Este dataset lista las fuentes secundarias con preguntas orientadoras para un estudio diagnóstico, desarrollado en el marco de la estructura curricular institucional para el diseño de planes de estudio de acuerdo con el modelo Hilda Taba.
DOI: 10.17632/c7975tw86n
title: Supplemental Material

description: This supplemental material includes the "Quality of Evidence as Established by the 2009 Oxford Levels of Evidence Criteria" table and references for all articles included in this systematic review.
DOI: 10.6084/m9.figshare.10073246.v1
title: Nutritional status and dental caries of schoolchildren from Sobral - Ceará

description: ABSTRACT Objective: To examine the relationship between nutritional status and dental caries of schoolchildren from Sobral, Ceará, Braszil. Methods: Dental health and nutritional status of 92 children studying in two different schools and aging 5 years old were evaluated. The nutritional status was evaluated using the Body Mass Index (BMI), and the dental health status was evaluated using the Decayed, Missing, and Filling Tooth Index (DMFT-index). An interview with the parents of the children was also performed to investigate the socioeconomic profile and nutritional habits of the children. Results: A DMFT-index of 1.97 was found, and 39.6% of the childrenpresented overweight. Higher prevalence of dental caries was associated with low income, public schools, and less schooled parents. The variable overweight presented the inverse situation found for dental caries. Moreover, it was observed lower prevalence of caries in overweight children. Conclusion: Dental caries and nutritional status exhibited different behaviors in the population studied, which were driven by the sociodemographic profile of the family.
DOI: 10.6084/m9.figshare.28638554.v1
title: Date-pm2.5.xlsx

description: The original data of PM2.5 in this study is sourced from the grid data of PM2.5 concentration products provided by the Atmospheric Composition Analysis Group of Washington University in St. Louis (https://wustl.box.com/v/ACAG-V5GL04-GWRPM25c0p10).
DOI: 10.6084/m9.figshare.5844477.v1
title: How does the snakehead Channa argus survive in air? The combined roles of the suprabranchial chamber and physiological regulations during aerial respiration

description: The aerial survival time, oxygen consumption rate, and hematological and biochemical parameters during aerial exposure of snakeheads with either normal or injured suprabranchial organs.
DOI: 10.17632/3y49w4jg92
title: Data for: Diffusion of hydrogen in China Reduced Activation Ferritic-martensitic steels at low temperatures
DOI: 10.17632/ctv52cbkp8
title: Dataset: spatial variables for describing and mapping ecotone forests associated to the Maracá Island region, State of Roraima, northern Brazilian Amazon

description: The dataset provides information on spatial variables (altitude, slope, drainage distance, Normalized Difference Vegetation Index - NDVI) that are useful for describing and mapping the ecotone forest zones that occur on the Maracá Island and its surroundings, State of Roraima, northern Brazilian Amazon. The study area is ~450,000 ha, with its geographic center located in Maracá Island. The altitude, slope and drainage distance maps are derived from the TOPODATA Project (http://www.dsr.inpe.br/topodata/). The NDVI (Normalized Difference Vegetation Index) map was obtained from Landsat TM5 images: (i) orbit 232: points 57 (03/20/2007) and 58 (03/04/2007) and (ii) orbit 233: points 57 and 58 (11/03/2007). All maps were produced in a raster format with 30 m of spatial resolution and designed for UTM / Zone 20 N, WGS 84, using the ArcGis 10.0 software (http://www.esri.com/software/arcgis/index.html; licensed by Federal University of Roraima - UFRR). The maps were used to extract samples (pixel values) of each variable (altitude, slope, drainage distance, NDVI) from 129 permanent plots (50 mx 10 m; 6.45 ha) dispersed in the six East-West walking trails from the research grid of the Biodiversity Research Program (PPBio) (see Santos et al., 2020 - https://data.mendeley.com/datasets/2j354jtddx/2). The dataset consists of three files: (i) study_site - a figure indicating the location of the study area; (ii) maps - altitude (m), slope (°), drainage distance (m), NDVI (-1: 1); (iii) environmental_variables - altitude (m), slope (°), drainage_distance (m) and NDVI (-1: 1) related to the 129 permanent plots used in the dataset. The current dataset was supported by the projects (i) SavFloRR - Ecologia e manejo dos recursos naturais de ecossistemas de savanas e florestas de Roraima (PPI INPA 015/122), and (ii) Crescimento e mortalidade de árvores em florestas ecotonais de Roraima: efeito das condicionantes ambientais e da variabilidade climática (Proc. CNPq n. 403591 / 2016-3). The Coordination for the Improvement of Higher Education Personnel (CAPES) supported E.H.S. The PELD Program provide a scholarship to W.R.S. (CNPq / CAPES / FAPs / BC-Fundo Newton; Proc. N. 441575 / 2016-1). The National Council for Scientific and Technological Development (CNPq) provided a grant to R.I. Barbosa (CNPq 304204 / 2015-3). The Chico Mendes Institute for Biodiversity Conservation (ICMBio) authorized the study (SISBIO nº 52071).