cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26247131
title: Supplementary Material for: Yoga as a complementary therapy for cancer patients: from clinical observations to biochemical mechanisms

description: Background: Integrative oncology combines conventional and complementary, or integrative, therapies for a holistic treatment of cancer patients. Yoga is increasingly used as a complementary therapy for cancer patients, but there is no direct evidence for its effect on cancer pathophysiology like tumor response, or patient outcome like overall survival. 
Summary: In this narrative review, we present in detail published studies from randomized clinical trials on complementary yoga therapy for cancer patients, including details about the biochemical mechanisms involved. Medicinal hatha yoga with breathing, postures, meditation, and relaxation enhances the quality of life of cancer patients by providing both psychological and physiological health benefits, highlighting the interconnectedness of mind and body. Yoga therapy reduces stress levels improving heart rate variability, leading to changes in hormonal regulation (e.g. cortisol), reduced oxidative stress and improved immune function with reduced inflammation. Still, the biochemical effects of yoga on the cancer disease itself are unrevealed.
Key messages: More clinical and basic research is needed for further establishment of yoga as complementary therapy in oncology.
DOI: 10.6084/m9.figshare.27099142
title: Supplementary Material for: Off-label Use of Mycophenolate Mofetil in Immunoglobulin A Nephropathy: A Systematic Review and Meta-analysis

description: Introduction: Mycophenolate mofetil (MMF) is widely used off-label in patients with immunoglobulin A nephropathy (IgAN), although the literature does not consistently agree on its efficacy and safety. 
Methods: We systematically searched PubMed, Embase, CENTRAL, CNKI, VIP, Wanfang Data, and SinoMed from their inception to August 2023. We included randomized controlled trials that enrolled patients of IgAN who received MMF treatment and compared effects with placebo or as an add-on therapy to usual care. Literature screening, risk of bias assessment, and data extraction were independently conducted in duplicate. Fixed-effects or random-effects meta-analyses were performed for pooling data where eligible. The primary outcomes were the composite kidney outcomes of major adverse kidney events (MAKDE) defined as doubling of serum creatinine, end-stage renal disease (ESRD), or death from a kidney disease-related or cardiovascular cause.
Results: Of 13 studies identified, 918 participants (463 [50.4%] treated with MMF) with IgAN were included in the analysis. MMF treatment in IgAN was associated with decreasing the occurrence of MAKDE (RR, 0.32; 95%CI, 0.13 to 0.77), reducing proteinuria (RR, 1.41; 95%CI, 1.22 to 1.64), and lessening the probability of doubling blood creatinine (RR, 0.32, 95% CI, 0.14 to 0.72). No significant differences were detected in the incidence of ESRD (RR: 0.87, 95% CI: 0.38 to 2.03), or progression of chronic kidney disease (RR, 1.01; 95%CI, 0.22 to 4.57). Patients receiving MMF had a higher risk of infection (RR, 2.20; 95%CI, 1.21 to 4.00). 
Conclusion: MMF administration in IgAN indicates promising in decreasing the occurrence of MAKDE, reducing proteinuria level, and lessening the probability of doubling blood creatinine, but also comes with the risk of infection. These findings tend to be introduced to non-Caucasian population. The long-term favorable effects that MMF improved kidney outcomes still needs need further cross-regional and cross-ethnical verification.
DOI: 10.6084/m9.figshare.27101548
title: Supplementary Material for: A retrospective analysis of the diagnosis of gastroenteropancreatic neuroendocrine tumors (GEP-NETs) at The Ottawa Hospital Cancer Centre (TOHCC) over the last decade including COVID-19 pandemic period.

description: Introduction: The incidence of NETs is rising. Our objective was to assess trends in GEP-NETs diagnosis (June 2010 to June 2021) at TOHCC and to explore whether early COVID-19 pandemic data impacted these trends. 
Methods: This was a single center retrospective chart review of data collected from June 2010 to June 2021. We searched all databases, including OACIS/EPIC, PACS and OPIS and found 647 GEP-NET patients. Descriptive analyses were performed using frequencies and related percentages. 
Results: Of 647 patients with GEP-NETs, the small bowel was the most common primary location (n=210, 32.4%), followed by the pancreas (n=118, 18.2%), and unknown primary location (n=99, 15.3%). Most of the cases were classified as metastatic or locally advanced at the initial presentation. There has been no significant variation in the frequency distribution of these cases over the last decade. Stages 1 and 2 were found in 158 cases (23.8%), and lower GI tumors were the most common disease among them (n=88, 55.7%). There were 5 lower GI cases in 2010-2011 and average number per registration year was 5.5 until 2016-2017, after which time the number of cases increased to 10, 15, 11 and 13 during the last 4 years. Regarding early stage pancreatic and upper GI NETs, the total number of cases was 52 (32.9%) and 18 (11.4%), respectively. The average number of cases per registration year for pancreatic tumors was 4.7, while that for upper GI tumors was 1.6 over the last decade. 
Discussion: At our center, most GEP-NETs presented in an advanced setting. Small bowel is the most common location overall. The incidence of early stage disease has increased. Disease detection for all GEP-NETs was consistent throughout the last decade, except for the lower GI cases that have increased since mid-2017, perhaps reflecting the adoption of Ontario FIT testing. Despite endoscopy closures and disruption of some diagnostic services during the pandemic, cases of GEP-NETs for all stages did not decrease.
DOI: 10.1594/pangaea.882503
title: Antarctic geothermal heat flux distribution and estimated Curie Depths, links to gridded files

description: Antarctica is the largest reservoir of ice on Earth. Understanding its ice sheet dynamics is crucial to unraveling past global climate change and making robust climatic and sea level predictions. Of the basic parameters that shape and control ice flow, the most poorly known is geothermal heat flux. Direct observations of heat flux are difficult to obtain in Antarctica, and until now continent-wide heat flux maps have only been derived from low-resolution satellite magnetic and seismological data. We present a high resolution heat flux map and associated uncertainty derived from spectral analysis of the most advanced continental compilation of airborne magnetic data. Small-scale spatial variability and features consistent with known geology are better reproduced than in previous models, between 36% and 50%. Our high-resolution heat-flux map and its uncertainty distribution provide an important new boundary condition to be used in studies on future subglacial hydrology, ice-sheet dynamics and sea-level change.
description: Gridded data at 15 km. X and Y coordinates are in polar stereographic projection.
description: Supplement to: Martos, Yasmina M; Catalán, Manuel; Jordan, Tom A; Golynsky, Alexander V; Golynsky, Dmitry A; Eagles, Graeme; Vaughan, David G (2017): Heat flux distribution of Antarctica unveiled. Geophysical Research Letters, 44(22), 11417-11426
DOI: 10.17909/cqfq-5n80
title: Data from "High-Redshift Galaxy Candidates at z = 9-13 as Revealed by JWST Observations of WHL0137-08"

description: This dataset includes HST and JWST imaging data products of the galaxy cluster WHL0137-08 used in the paper "High-Redshift Galaxy Candidates at z = 9-13 as Revealed by JWST Observations of WHL0137-08" (Bradley et al.)". In total, the JWST and HST observations include imaging in 17 filters spanning 0.4 - 5.0 micron.
DOI: 10.3886/e192142v1
title: Data and Code for: The Curse of Plenty: The Green Revolution and the Rise in Chronic Disease

description: The rising rate of chronic disease is a leading driver of the global disease burden. Yet its determinants are not fully understood. We examine the unanticipated contribution of the Green Revolution to the rise in chronic, diet-related diseases by exploiting the faster adoption of high-yield rice and wheat in groundwater-rich districts in India. We find that boys exposed to the Green Revolution during gestation and infancy in areas with greater adoption of new staple varieties were more likely to develop diabetes as adults. Exploring mechanisms, we find that the impact on diabetes differs in households with different dietary habits. We detect no impact on non-diet-related chronic diseases, such as cancer, asthma, and tuberculosis. We conclude that dietary changes can undermine the long-term health benefits of positive income shocks in early childhood, highlighting the need for agricultural and public health policy to emphasize dietary diversity in addition to calorie availability.
DOI: 10.5281/zenodo.10066319
title: Dataset for 'Hadronic processes at work in 5BZB J0630−2406'
DOI: 10.5281/zenodo.13368404
title: Stream water quality data in Tianmu Lake watershed

description: Water samples were gathered from a total of 30 sites across the Tianmu Lake Watershed from July 2020 to September 2022. Sampling was conducted approximately monthly throughout the study period.
DOI: 10.5281/zenodo.13606930
title: Code to reproduce the data analysis performed in the study "EXCRETE workflow enables deep proteomics of the microbial extracellular environment"
DOI: 10.5281/zenodo.13753944
title: A Bioconductor workflow for processing, evaluating and interpreting expression proteomics data

description: Files for users of the workflow "A Bioconductor workflow for processing, evaluating and interpreting expression proteomics data". Files include Proteome Discoverer (v2.5) processing and consensus workflows for both TMT and LFQ expression proteomics data. Also provided are the output .txt files of a corresponding Proteome Discoverer identification search, as required for users to follow the workflow themselves. For raw data please refer to PRIDE. Appendix is provided as a PDF.
DOI: 10.5281/zenodo.3898452
title: Grades of Computer Science Students in a Nigerian University

description: <strong>Brief Description of Dataset</strong> The dataset contains information about students in a 5-year Bachelor of Technology Degree in Computer Science from a North Eastern Nigerian University of Technology. The year of enrolment of the students ranges from 2005 to 2015. In the dataset, “NA” means that the student did not attempt the course. <strong>Data Cleaning</strong> First steps: the student marks that are less than 40 are excluded, as the course has to be retaken to be passed with a minimum of 50 marks. In addition, courses that are taken outside of graduation audit by students are eliminated. There were 430 students screened for enrolment in the study with 95 being excluded because they did not take the course within the period of degree program for their early exemption. The exact ages of the participants are unknown other than all students enrolled were aged above 18 years of age.
DOI: 10.5285/1db7f188-6c3e-46cf-a3bf-e39dbd77e14c
title: Medium resolution vector polylines of the Antarctic coastline - VERSION 7.6

description: Coastline for Antarctica created from various mapping and remote sensing sources, consisting of the following coast types: ice coastline, rock coastline, grounding line, ice shelf and front, ice rumple, and rock against ice shelf. Covering all land and ice shelves south of 60S. Suitable for topographic mapping and analysis. This dataset has been generalised from the high resolution vector polyline. Medium resolution versions of ADD data are suitable for scales smaller than 1:1,000,000, although certain regions will appear more detailed than others due to variable data availability and coastline characteristics. Changes in v7.6 include updates to the Amery Ice Shelf front, ice shelves and glaciers east of Law Dome, and sections of coast and ice shelf around Abbot Ice Shelf and Pine Island Glacier. Data compiled, managed and distributed by the Mapping and Geographic Information Centre and the UK Polar Data Centre, British Antarctic Survey on behalf of the Scientific Committee on Antarctic Research.
description: Dataset compiled from a variety of Antarctic map and satellite image sources. The dataset was created using ArcGIS and QGIS GIS software programmes and has been checked for basic topography and geometry checks, but does not contain strict topology. Quality varies across the dataset and certain areas where high resolution source data were available are suitable for large scale maps whereas other areas are only suitable for smaller scales. Each line has attributes detailing the source which can give the user further indications of its suitability for specific uses. Attributes also give information including 'surface' (e.g. grounding line, ice coastline, ice shelf front) and revision date. Compiled from sources ranging in time from 1990s-2022 - individual lines contain exact source dates. This medium resolution version has been generalised from the high resolution version. All areas &lt;0.1km2 not intersecting anything else were deleted and the 'simplify' tool was used in ArcGIS with the 'point remove' algorithm and a smoothing tolerance of 50 m.
DOI: 10.6084/m9.figshare.25735446
title: Supplementary Material for: Association between waist-hip ratio and Female Infertility in the United States: Data from National Health and Nutrition Examination Survey 2017–2020

description: Introduction: Obesity has previously been correlated with an elevated risk of reproductive system diseases in women. The waist-hip ratio (WHR) has been shown to be correlated with visceral fat, making it one of the most commonly used indicators of abdominal obesity. However, little is known about the relationship between WHR and infertility. Therefore, the aim of this study was to evaluate the effect of the WHR on infertility in women of childbearing age.
Methods: The study used cross-sectional data from women aged 20 to 45 who participated in the National Health and Nutrition Examination Survey (NHANES), which was conducted between 2017 and 2020. We collected details of their Waist Circumference, hip Circumference, fertility status and several other essential variables. We used multivariate logistic regression analysis and subgroup analyses to assess the association between WHR and infertility.
Results: There were 976 participants, with 12.0% (117/976) who experienced infertility. After adjusting for potential confounding factors, our multivariate logistic regression analysis revealed that every 0.1 unit increase in WHR resulted in a more than 35% higher risk of infertility (OR (95% CI): 1.35 (1.01~1.81), P = 0.043). Compared to the group with WHR &lt;0.85, the risk of infertility increased in the group with WHR ≥0.85, with an adjusted odds ratio (OR) of 1.74 (95% CI 1.06~2.85). When WHR was treated as a continuous variable, it was observed that each 0.1 unit increase in WHR was associated with a relatively high risk in the secondary infertility population after adjusting all covariates, with an OR of 1.66 (95% CI 1.14~2.40, P = 0.01). When WHR was analyzed as a categorical variable, the group with WHR≥0.85 exhibited a significantly higher risk of secondary infertility than the group with WHR&lt;0.85, with the OR of 2.75 (95% CI: 1.35-5.59, P = 0.01) after adjusting for all covariates. Furthermore, the interaction analysis indicated that there was a significant interaction between age status on WHR and the risk of infertility. 
Conclusion: WHR showed a positive correlation with the risk of infertility. This study highlights the importance of effectively managing abdominal fat and promoting the maintenance of optimal WHR levels to mitigate the progression of infertility, particularly for younger women.
DOI: 10.6084/m9.figshare.26539345
title: Spatial Analysis Reveals Targetable Macrophage-Mediated Mechanisms of Immune Evasion in Hepatocellular Carcinoma Minimal Residual Disease

description: We utilized CO-Detection by indEXing (CODEX) technology to image a total of 1,065,284 hepatocellular carcinoma (HCC) cells, analyzing them with a comprehensive 41-marker panel. In this procedure, DNA-barcoded antibodies targeted tissue antigens and were visualized through iterative hybridization with complementary fluorescent DNA oligonucleotides. Our algorithmic pipeline processed the raw imaging data to segment and identify single cells, accurately localize them within tissues, and quantify their marker expressions. Further, unsupervised clustering, enhanced by manual curation, utilized marker expression, and tissue localization to identify specific cell types. The imaging data were segmented into single cells based on nuclear staining, using DAPI as a reference. Spatial coordinates (X/Y) were assigned to each cell, allowing us to pinpoint each cell's precise location on the slide. The methodologies employed are detailed further in the accompanying manuscript.

The "Celllevel_rawdata_8_12_24.csv" table has been compiled to include annotations of cell types, expression profiles, coordinates of all segmented objects, and the cohort to which each cell belongs.
DOI: 10.5519/0002965
title: Collection specimens

description: Specimen records from the Natural History Museum's collection
DOI: 10.1594/pangaea.930237
title: Predicted Antarctic Heat Flow and Uncertainties using Machine Learning

description: We predicted Antarctic Geothermal Heat Flow (GHF) using a machine learning approach. The adopted approach estimates GHF from multiple geophysical and geological data sets, assuming that GHF is substantially related to the geodynamic setting of the plates. We applied a Gradient Boosted Regression Tree algorithm to find an optimal prediction model relating GHF to the observables. In Antarctica, only a sparse number of direct GHF measurements are available, and therefore, in addition to the global models, we explore the use of regional data sets of Antarctica as well as its tectonic Gondwana neighbors to refine the predictions. We hereby demonstrated the need for adding reliable data to the machine learning approach. Here, we present a new geothermal heat flow map, which exhibits intermediate values compared to previous models, ranging from 35 to 156 mW/m2 and showing visible connections to the conjugate margins in Australia, Africa, and India. Also, the data set contains minimum and maximum heat flow values and maximum absolute differences, resulting from calculating three additional heat flow models with different feature set-ups to assess the direct uncertainties.
DOI: 10.17632/cwv22bcpyr.1
title: Coropuna_hydrostudy_data

description: This is the supplementary data for the article, Spatially-heterogeneous discharge of glacial meltwater to drainages surrounding the ablating Coropuna ice cap, Peruvian Andes, in press at the Journal of Hydrological Science. 
Citation:
DOI: 10.17909/bysp-ds64
title: JWST data described in van Mierlo et al. 2023

description: JWST images used in van Mierlo et al. 2023 to study the nature of HKs-dropouts galaxies in PRIMER.
DOI: 10.26060/p5s8-cw25
title: FSL  Particle Size Classification
DOI: 10.5066/p92hvkt3
title: Geomorphic variables for classification of the Upper Missouri River, Montana and North Dakota

description: This dataset consists of seven geomorphic variables attributed to standard river mile address points at 0.1 mile (160 m) intervals between Fort Peck Dam and the headwaters of Lake Sakakawea. The data illustrate the geomorphic variation in this 300-km segment of the Upper Missouri River and are indicative of channel complexity, thought to be an important influence on dispersal and retention of larval sturgeon.
DOI: 10.5159/iqb_pisa_plus_2012-13_v2
title: Programme for International Student Assessment - Plus 2012, 2013 (PISA-Plus 2012, 2013)
title: Programme for International Student Assessment - Plus 2012, 2013 (PISA-Plus 2012, 2013)

description: Das Projekt PISA-Plus 2012-2013 ergänzt die internationale PISA Haupterhebung im Jahre 2012 um eine Längsschnittkomponente mit einem zweiten Messzeitpunkt. Dieselben Schülerinnen und Schüler wurden bei der regulären Erhebung im Jahr 2012 sowie ein Jahr später in der zehnten Jahrgangsstufe erneut getestet. Im Rahmen des Projektes bietet sich die Möglichkeit, Veränderungen im Verlauf eines Schuljahres abzubilden. Zusätzlich erlaubt diese längsschnittliche Betrachtung die Analyse von Bedingungen, die den Kompetenzerwerb beeinflussen.
description: PISA-Plus 2012-2013 supplements the international PISA main survey in 2012 by a longitudinal component with a second measurement date. The same students were tested in the regular survey in 2012 and one year later in the tenth grade. Within the framework of the project it is possible to map changes over the course of a school year. In addition, this longitudinal dataset allows the analysis of conditions that influence the acquisition of competences.
description: Self-administered questionnaire: Paper
description: Educational measurements and tests
description: Messungen und Tests: Paper and Pencil test
description: Measurements and Tests: Paper and pencil test
description: 1. MZP: Schüler (N= 9.998) aus Schulen (N=222); 
2. MZP: Schüler (N=4.610) aus Schulen (N=135)
description: 1st time of measurement: Students (N=9,998) from schools (n=222);
2nd time of measurement: Students (N=4,610) from schools (n=135)
description: Kombination aus Wahrscheinlichkeit- und Nicht-Wahrscheinlichkeitsauswahl
DOI: 10.5281/zenodo.12775387
title: Light sheet acquisitions

description: Example datasets used to validate remote focus light sheet model. One dataset is an example light sheet imaged in transmission. The other is a 200um zstack of beads illuminated with a static light sheet. The analysis code can be found in our Github repository, DOI 10.5281/zenodo.12752312.
DOI: 10.5281/zenodo.12804749
title: Reciprocal best hits BLAST files for "EXCRETE workflow enables deep proteomics of the microbial extracellular environment"

description: .fasta file input and tabular output from a BLAST reciprocal best hits analysis on https://usegalaxy.eu/
DOI: 10.5281/zenodo.13132357
title: Database for the Final Palaeolithic archaeological record in western, southern and central Europe

description: The database contains information on georeferenced archaeological sites of the Final Palaeolithic (Greenland Interstadial 1d-a and Greenland Stadial 1) from western, southern and central Europe. Additional chronocultural information (presence/absence of dated or typologically assigned assemblages) is given for each site. Sites with little chronocultural resolution are recorded, but attributed to larger timebins. The data have been compiled by the authors. The management of the data compilation and further research on the palaeodemographic implications (Schmidt et al. 2024) was conducted in the framework of the Collaborative Research Centre 806 “Our Way to Europe” (funded by the Deutsche Forschungsgemeinschaft - Project ID 57444011).
DOI: 10.5281/zenodo.5093800
title: Replication Package - Moderator Factors of Software Security and Performance Verification

description: Replication package for the paper "Moderator Factors of Software Security and Performance Verification"
DOI: 10.15468/dl.cfgmk4
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is JE",
 "TaxonKey is Pedicularis kerneri Dalla Torre"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000319-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17189/m9sk-g963
title: Occultation Predictions from R. G. French and D. Souami (2023)

description: Supplementary Online Material (SOM) for Occultation Predictions, R. G. French and D. Souami (2023)