cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14361306
title: Cluster dynamics in macroscopic photoactive particles

description: This repository contains the clusters detected in the experiments reported in "Cluster dynamics in macroscopic photoactive particles" (authors: Sára Lévay, Axel Katona, Hartmut Löwen, Raúl Cruz Hidalgo, and Iker Zuriguel).

Experiments are done for five different total populations (N_T=40, 60, 80, 100, 120), and seven different homogeneous activity levels (P=23, 33, 43, 52, 60, 67, 72 mW), each repeated 5 times. Clusters were detected in all experiments, and their time evolution is published in this dataset.

For the homogeneous illumination:



Each experiment has an ID, which can be found in metadata.csv, along with N_T and P.

cumulative_clusters.csv contains the time evolution for all the clusters detected in these experiments.The columns: 1: cluster ID, 2: frame number, 3: size of the cluster, 4: experiment ID.The time is measured in frames, and the videos were recorded with 30 fps.


For inhomogeneous illumination:



We have also conducted experiments to detect the cluster formation and dissolution.To induce cluster growth, we applied low illumination to one half of the arena, and once a large cluster was formed, we switched to a high, homogeneous illumination to induce cluster dissolution.

The time evolution of cluster growth and dissolution is available in crdata_reduced.csv and dsdata_reduced.csv, respectively.

A pseudo-code is provided in prepare_hist.md to process the cluster dissolution statistics and obtain the disassociation probabilities presented in Fig.5(e) of the manuscript.

Additional code is available on GitHub.
DOI: 10.15468/dl.3pw7um
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pycnonotus jocosus",
 "Country is Saudi Arabia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009862-250802193616735/datasets/export for details.
DOI: 10.6084/m9.figshare.29821130
title: Untitled Ite<b>Elucidating the Gut Microbiota-Driven Crosstalk: Mechanistic Interplay of </b><b>Lobetyolin</b><b> in Coordinating Cholesterol Homeostasis and Anti-Inflammatory Pathways in Hyperlipidemic Mice Models</b>m

description: the objective of this study is to investigate the molecular processes by which lobetyolin modifies gut microbiota to improve intestinal inflammation and lipid metabolism abnormalities in hyperlipidemic mice. This study provides a theoretical basis for the development of natural product therapies that focus on multi-target regulation by elucidating the critical role of lobetyolin in controlling the ecological network of gut microbiota and its related regulatory pathways in the host's metabolic immune network. The results indicate that LBT can reduce the expression of SREBP2 and HMGCR, thereby decreasing the generation of endogenous cholesterol. Lobetyolin enhances the expression of ABCA1, ABCG5, ABCG8, and LDLR, promoting reverse cholesterol transport and facilitating the clearance of cholesterol from peripheral tissues. Additionally, Lobetyolin exerts anti-inflammatory effects via the TLR4/NF - κ B signaling pathway, regulates Th1 and Th2 immune responses, and enhances the immune potential of the colonic mucosa. Based on 16S rRNA sequencing data, LBT therapy increased the abundance of beneficial bacteria, including Akkermansia, Dubosiella, Parasottella, Lactobacillus, Bacteroides, and Paramuribaculum. The abundance of these beneficial bacteria was positively correlated with HDL-C, SIgA, IL-4, and IL-10, and negatively correlated with IL-6, INF-γ, TNF-α, INF-γ/IL-4, and INF-γ/IL-10. In summary, our study not only provides empirical evidence for LBT's regulation of metabolic liver disease by Lobetyolin but also emphasizes its importance in the ecological structure of the gut microbiota and its interaction with the host metabolic immune network in diseases.
DOI: 10.6084/m9.figshare.29821130.v1
title: Untitled Ite<b>Elucidating the Gut Microbiota-Driven Crosstalk: Mechanistic Interplay of </b><b>Lobetyolin</b><b> in Coordinating Cholesterol Homeostasis and Anti-Inflammatory Pathways in Hyperlipidemic Mice Models</b>m

description: the objective of this study is to investigate the molecular processes by which lobetyolin modifies gut microbiota to improve intestinal inflammation and lipid metabolism abnormalities in hyperlipidemic mice. This study provides a theoretical basis for the development of natural product therapies that focus on multi-target regulation by elucidating the critical role of lobetyolin in controlling the ecological network of gut microbiota and its related regulatory pathways in the host's metabolic immune network. The results indicate that LBT can reduce the expression of SREBP2 and HMGCR, thereby decreasing the generation of endogenous cholesterol. Lobetyolin enhances the expression of ABCA1, ABCG5, ABCG8, and LDLR, promoting reverse cholesterol transport and facilitating the clearance of cholesterol from peripheral tissues. Additionally, Lobetyolin exerts anti-inflammatory effects via the TLR4/NF - κ B signaling pathway, regulates Th1 and Th2 immune responses, and enhances the immune potential of the colonic mucosa. Based on 16S rRNA sequencing data, LBT therapy increased the abundance of beneficial bacteria, including Akkermansia, Dubosiella, Parasottella, Lactobacillus, Bacteroides, and Paramuribaculum. The abundance of these beneficial bacteria was positively correlated with HDL-C, SIgA, IL-4, and IL-10, and negatively correlated with IL-6, INF-γ, TNF-α, INF-γ/IL-4, and INF-γ/IL-10. In summary, our study not only provides empirical evidence for LBT's regulation of metabolic liver disease by Lobetyolin but also emphasizes its importance in the ecological structure of the gut microbiota and its interaction with the host metabolic immune network in diseases.
DOI: 10.15468/dl.c35uvy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argemone mexicana",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009863-250802193616735/datasets/export for details.
DOI: 10.15468/dl.qx5zxk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dracocephalum kotschyi",
 "Geometry POLYGON ((26.04335 1.226334, 135.0263 1.226334, 135.0263 55.38525, 26.04335 55.38525, 26.04335 1.226334))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009864-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.baymqx
title: Occurrence Download

description: A dataset containing 146888427 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 146888427 records from 1851 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009823-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/871704db74361bc24665c9ff93c92004
title: UCSB SONGS Mitigation Monitoring: Wetland Survey - Water Quality

description: These data describe measurements of water characteristics (temperature, salinity, and dissolved oxygen) collected as part of the SONGS San Dieguito Wetland Restoratio mitigation monitoring program designed to evaluate compliance of the restoration project with conditions of the SONGS permit. 
Monitoring began in 2012 in the San Dieguito Wetlands and Tijuana Estuary in San Diego County, CA, Carpinteria Salt Marsh in Santa Barbara County, CA, and Mugu Lagoon in Ventura County, CA. 
Measurements of water depth, temperature, salinity, and dissolved oxygen were recorded daily in fifteen minute intervals at two sampling stations (primary and backup) at the San Dieguito Wetland, Carpinteria Salt Marsh, and Mugu Lagoon, and one sampling station (primary) at the Tijuana Estuary.
DOI: 10.15468/dl.k1g1bc
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020221-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdxv49
title: Occurrence Download

description: A dataset containing 163344122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Deferribacteres, Cyanobacteria, Platyhelminthes, Ustilaginomycetes, 188, Cycadopsida, Monoblepharidomycetes, Calcarea, Trypanosomatidae, Oligotrichida Bütschli, 1887, Prolecithophora, Apororhynchida, Thalassiosirales, Esociformes, Pleuronectiformes, Garryales, Poecilosclerida, Siluriformes, Zoopagales, Mantodea, Afrosoricida, Euphausiacea, 908, 948, Spirulida, Olpidiopsidales, Osmeriformes, Anseriformes, Glomerales, Caldisphaerales, Thysanoptera, Pyxidiophorales, Ophidiiformes, Chlorococcales, Akentrogonida, Siphonostomatoida, Diadematoida, Dracunculoidea Stiles, 1907, Eremaeoidea Oudemans, 1900, 1588, 1628, Gripopterygoidea Enderlein, 1909, Corbiculoidea J. E. Gray, 1847, Euphthiracaroidea Jacot, 1930, Rhyacophiloidea Stephens, 1836, Copromorphoidea, 1868, Mastigamoebaceae, Eustigmataceae, Carcinonemertidae, Pterosphaeridiaceae, Poraniidae, Catenicellidae, Myeloconidaceae, Centrophoridae, Stephanoberycidae, Lepidolaenaceae, Keronidae Dujardin, 1840, Miliolidae Ehrenberg, 1839, Cuscutaceae, Thymelaeaceae, Protoscyphaceae, Valerianaceae, Chordodidae, Nygolaimidae, Helicodiscidae, Littorinidae, Notobranchaeidae, Heterothyonidae, Maamingidae, Sejidae, Vampyroteuthidae, Noelaerhabdaceae, Polyodontidae, Anhimidae, Nematoplanidae, Zannichelliaceae, Phymatocerotaceae, Fecampiidae, Pleorchiidae, Euretidae, Doassansiaceae, Pseudolestidae, Diadocidiidae, Anablepidae, Macrodasyidae, Verticordiidae, Lophopodidae, Polymorphidae, Syllidae, Oribatellidae, Oxidae, Chanidae, Echinosteliaceae, Brachypteridae, Tetragoniomycetaceae, Hepatidae, Callyspongiidae, Campanulinidae, Micrabaciidae, Macrosternodesmidae, Microtegeidae, Umbilicariaceae, Melogrammataceae, Amylocorticiaceae, Arapaimidae, Eleotridae, Cymidae, Platygastridae, Antipodoeciidae, Cystisomatidae, Urothoidae, Scorpaenidae, Arctiidae, Gloeopodiaceae, Racopilaceae, Orthotrichaceae, Staphylococcaceae, Noteridae, Leptolegniaceae, Lecanoraceae, Callidulidae, Merliidae, Rhodogorgonaceae, Cyclopidae, Thalestridae, Sparidae, Phasmatidae, Pliciloricidae, Oceanospirillaceae, Aulacoctenidae, Phalacrocoracidae, Nandiniidae, Cryptoniscidae, Platyarthridae, Mamiellaceae, Prolagidae, Laonastidae, Dryomyzidae, Rhiniidae, Actinoporidae, Hatschekiidae, Oriolidae, Phillipsiellaceae, Chuniellidae, Myriaporidae, Lepidosirenidae, Peridiscaceae, Arthropleidae, Anatomidae, Tetraplariidae, Mecognathidae, Monosoleniaceae, Aspidiscidae Ehrenberg, 1830, Caecidae)"
 ]
}

 The dataset includes 163344122 records from 10963 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0318620-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/hxh-t1g-1xh
title: Sus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mkz-ewx-87g
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ss9-9yz-m18
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vmn-g21-mde
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/34m-p0l-5g3
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5kc-gs3-6xq
title: Balclutha punctata (Fabricius, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9pj-kae-xyg
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0e8-7pn-96h
title: Equus (Equus) caballus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a6g-b7m-wjy
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1zn-jch-ftr
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lmw-hzt-sak
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nn0-48v-9w8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gnk-apy-t58
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/df9-lqx-qq2
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y2s-jb1-nvb
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2ah-93d-rqj
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hwb-v6k-d3r
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.t4sgd9
title: Occurrence Download

description: A dataset containing 36974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lotus tenuis"
 ]
}

 The dataset includes 36974 records from 829 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021589-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.geaamr
title: Occurrence Download

description: A dataset containing 3331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "OccurrenceStatus is Present",
 "TaxonKey is Passiflora caerulea L."
 ]
}

 The dataset includes 3331 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008102-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tm4dkj
title: Occurrence Download

description: A dataset containing 6903 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaryllis belladonna L."
 ]
}

 The dataset includes 6903 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008100-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc5hkry
title: CCDC 163920: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, A.Degen, S.Ruhl|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|444|doi:10.1107/S0108270101000063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hksz
title: CCDC 163921: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, A.Degen, S.Ruhl|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|446|doi:10.1107/S0108270101001792
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hkv1
title: CCDC 163923: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, A.Degen, S.Ruhl|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|446|doi:10.1107/S0108270101001792
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hkw2
title: CCDC 163924: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, A.Degen, S.Ruhl|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|446|doi:10.1107/S0108270101001792
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hkx3
title: CCDC 163925: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, A.Degen, S.Ruhl|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|446|doi:10.1107/S0108270101001792
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hky4
title: CCDC 163926: Experimental Crystal Structure Determination

description: Related Article: M.Bolte, A.Degen, S.Ruhl|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|446|doi:10.1107/S0108270101001792
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hkz5
title: CCDC 163927: Experimental Crystal Structure Determination

description: Related Article: G.Ferguson, C.Glidewell|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|452|doi:10.1107/S0108270101000075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hl07
title: CCDC 163928: Experimental Crystal Structure Determination

description: Related Article: C.Glidewell, D.Cannon, A.Quesada, J.N.Low, S.A.McWilliam, J.M.S.Skakle, J.L.Wardell|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|455|doi:10.1107/S0108270101001809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hl18
title: CCDC 163929: Experimental Crystal Structure Determination

description: Related Article: C.Glidewell, D.Cannon, A.Quesada, J.N.Low, S.A.McWilliam, J.M.S.Skakle, J.L.Wardell|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|455|doi:10.1107/S0108270101001809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hl29
title: CCDC 163930: Experimental Crystal Structure Determination

description: Related Article: P.Prabakaran, J.J.Robert, P.T.Muthiah, G.Bocelli, L.Righi|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|459|doi:10.1107/S0108270101000269
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hl3b
title: CCDC 163931: Experimental Crystal Structure Determination

description: Related Article: A.Gzella, U.Wrzeciono, W.Poppel|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|462|doi:10.1107/S0108270101000270
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hl4c
title: CCDC 163932: Experimental Crystal Structure Determination

description: Related Article: A.Gzella, U.Wrzeciono, W.Poppel|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|462|doi:10.1107/S0108270101000270
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc5hl5d
title: CCDC 163933: Experimental Crystal Structure Determination

description: Related Article: A.Gzella, U.Wrzeciono, W.Poppel|2001|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|57|462|doi:10.1107/S0108270101000270
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.