cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uv2e47
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thersandrus compressus (Desbonne, 1867)"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133627-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2s54a
title: Occurrence Download

description: A dataset containing 5266 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asclepias linaria Cav."
 ]
}

 The dataset includes 5266 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031186-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qg9ect
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thoe puella Stimpson, 1860"
 ]
}

 The dataset includes 139 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133635-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5z5bf5
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pseudomys occidentalis Tate, 1951)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 99 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079028-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63bv6z
title: Occurrence Download

description: A dataset containing 848 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tragulus javanicus (Osbeck, 1765)"
 ]
}

 The dataset includes 848 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0344903-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ueq2sy
title: Occurrence Download

description: A dataset containing 45888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "OccurrenceStatus is Present",
 "TaxonKey is Botaurus stellaris (Linnaeus, 1758)",
 "Year 2000-2023"
 ]
}

 The dataset includes 45888 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079029-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dxcgj
title: Occurrence Download

description: A dataset containing 1978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Invasive Non-Native Species",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1978 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341833-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6v3nqg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus reshadensis Podlech"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079048-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5pzgdm
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Babyrousa celebensis (Deninger, 1909)"
 ]
}

 The dataset includes 70 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0344912-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bf2wan
title: Occurrence Download

description: A dataset containing 17869 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Heteronotia binoei (Gray, 1845))",
 "Year is greater than or equal to 1987",
 "Geometry POLYGON ((111.9294 -44.62147, 160.1646 -44.62147, 160.1646 -8.303999, 111.9294 -8.303999, 111.9294 -44.62147))"
 ]
}

 The dataset includes 17869 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0129689-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zndna
title: Occurrence Download

description: A dataset containing 62339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phragmatobia fuliginosa (Linnaeus, 1758))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 62339 records from 296 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0249091-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw2vt6
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Melomys rubicola Thomas, 1924)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079101-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jysdmy
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((175.31609 -37.94429,175.32199 -37.94429,175.32199 -37.93989,175.31609 -37.93989,175.31609 -37.94429))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0433485-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4sfcgt
title: Occurrence Download

description: A dataset containing 7384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Sylvia conspicillata Temminck, 1820"
 ]
}

 The dataset includes 7384 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079058-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57kerp
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxynoemacheilus paucilepis (Erk'Akan, Nalbant & Özeren, 2007)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341825-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gf7j5s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus reverdattoanus Sumnev."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079075-230224095556074/datasets/export for details.
DOI: 10.15468/dl.2fravh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemibrycon guejarensis Román-Valencia, Ruiz-C. & Taphorn, 2018"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0341839-210914110416597/datasets/export for details.
DOI: 10.15468/dl.48paux
title: Occurrence Download

description: A dataset containing 1204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pteropus giganteus (Brünnich, 1782))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1204 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079074-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vkmqug
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Diplacina holgerhungeri Villanueva, 2012)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010851-240425142415019/datasets/export for details.
DOI: 10.15468/dl.yq4gdz
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Greece, Türkiye, Israel, Bulgaria, Cyprus, Iran (Islamic Republic of), Palestine, State of, Croatia, Italy)",
 "TaxonKey is Ameles heldreichi Brunner, 1882"
 ]
}

 The dataset includes 334 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273065-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bux9hb
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Notomys macrotis Thomas, 1921)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079098-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfqtfa
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Colobus vellerosus (I.Geoffroy Saint-Hilaire, 1834)"
 ]
}

 The dataset includes 125 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258385-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2hwsu
title: Occurrence Download

description: A dataset containing 38881052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pitangus sulphuratus (Linnaeus, 1766), Pelecanus erythrorhynchos Gmelin, 1789, Alopochen aegyptiaca (Linnaeus, 1766), Falco columbarius Linnaeus, 1758, Phoenicurus ochruros (S.G.Gmelin, 1774), Podiceps auritus (Linnaeus, 1758), Turdus iliacus Linnaeus, 1758, Aythya ferina (Linnaeus, 1758), Piranga olivacea (J.F.Gmelin, 1789), Milvus milvus (Linnaeus, 1758), Anser albifrons (Scopoli, 1769), Grallina cyanoleuca (Latham, 1802), Branta leucopsis (Bechstein, 1803), Piranga rubra (Linnaeus, 1758), Fringilla montifringilla Linnaeus, 1758, Ciconia ciconia (Linnaeus, 1758), Corvus frugilegus Linnaeus, 1758, Serinus serinus (Linnaeus, 1766), Aythya americana (Eyton, 1838), Larus occidentalis Audubon, 1839, Bubo virginianus (J.F.Gmelin, 1788), Charadrius dubius Scopoli, 1786, Sialia mexicana Swainson, 1832, Sylvia communis Latham, 1787, Rhipidura leucophrys (Latham, 1802))",
 "BasisOfRecord is one of (Human Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1950",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38881052 records from 7447 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010845-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mmgrzs
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Herpailurus yagouaroundi (É.Geoffroy Saint-Hilaire, 1803), Herpailurus yaguarondi yaguarondi, Puma yagouaroundi (É.Geoffroy Saint-Hilaire, 1803))",
 "Year 2018-2024"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013097-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w3wvqh
title: Occurrence Download

description: A dataset containing 1835 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Luria lurida (Linnaeus, 1758)"
 ]
}

 The dataset includes 1835 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013099-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2nsy3
title: Occurrence Download

description: A dataset containing 0 records in GBIF matching the query:
SELECT PRINTF('%04d-%02d', "year", "month") AS yearMonth, decimalLatitude AS lat, decimalLongitude AS lon, family, familyKey, genus, genusKey, species, speciesKey, iucnRedListCategory, basisOfRecord FROM occurrence WHERE iucnRedListCategory IN ('NT','VU','EN','CR','EW','EX','LC') AND occurrenceStatus = 'PRESENT' AND countryCode = '{{country}}' AND "year" &gt;= null AND classKey = 359 AND hasCoordinate = TRUE AND (coordinateUncertaintyInMeters &lt;= 1000 OR coordinateUncertaintyInMeters IS NULL) AND speciesKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND "month" IS NOT NULL AND basisOfRecord IN ('HUMAN_OBSERVATION','MACHINE_OBSERVATION','MATERIAL_CITATION','OBSERVATION','OCCURRENCE') GROUP BY yearMonth, lat, lon, familyKey, family, genusKey, genus, speciesKey, species, iucnRedListCategory, basisOfRecord

 The dataset's 0 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013088-240906103802322/datasets/export for details.
DOI: 10.17632/d573xfd9fg.3
title: GigaSSL-TCGA_embeddings-Models

description: You will find here the models needed to compute the Giga-SSL embeddings of WSIs. You will also find the Giga-SSL embeddings of the full TCGA-FFPE WSI dataset, computed with two models: one using a MoCo encoder, the second using the CTransPath tile-encoder. To load the embeddings: """python import numpy as np dico_embeddings = np.load('./Embeddings/TCGA-gigassl_moco.npy', allow_pickle=True).item() """
DOI: 10.17632/d573xfd9fg.4
title: GigaSSL-TCGA_embeddings-Models

description: You will find here the models needed to compute the Giga-SSL embeddings of WSIs.
You will also find the Giga-SSL embeddings of the full TCGA-FFPE WSI dataset, computed with two models: one using a MoCo encoder, the second using the CTransPath tile-encoder.

To load the embeddings:

"""python
import numpy as np
dico_embeddings = np.load('./Embeddings/TCGA-gigassl_moco.npy', allow_pickle=True).item()
"""
DOI: 10.17632/d573xfd9fg.5
title: GigaSSL-TCGA_embeddings-Models

description: You will find here the models needed to compute the Giga-SSL embeddings of WSIs.
You will also find the Giga-SSL embeddings of the full TCGA-FFPE WSI dataset, computed with two models: one using a MoCo encoder, the second using the CTransPath tile-encoder.

To load the embeddings:

"""python
import numpy as np
dico_embeddings = np.load('./Embeddings/TCGA-gigassl_moco.npy', allow_pickle=True).item()
"""
DOI: 10.17632/d573xfd9fg.1
title: GigaSSL-TCGA_embeddings-Models

description: You will find here the models needed to compute the Giga-SSL embeddings of WSIs. You will also find the Giga-SSL embeddings of the full TCGA-FFPE WSI dataset, computed with two models: one using a MoCo encoder, the second using the CTransPath tile-encoder. To load the embeddings: """python import numpy as np dico_embeddings = np.load('./Embeddings/TCGA-gigassl_moco.npy', allow_pickle=True).item() """
DOI: 10.17632/d573xfd9fg.2
title: GigaSSL-TCGA_embeddings-Models

description: You will find here the models needed to compute the Giga-SSL embeddings of WSIs. You will also find the Giga-SSL embeddings of the full TCGA-FFPE WSI dataset, computed with two models: one using a MoCo encoder, the second using the CTransPath tile-encoder. To load the embeddings: """python import numpy as np dico_embeddings = np.load('./Embeddings/TCGA-gigassl_moco.npy', allow_pickle=True).item() """
DOI: 10.17632/j3szbwjnnd.1
title: Urine GC-MS COVID-19

description: Urine GC-MS COVID-19
DOI: 10.5281/zenodo.13752714
title: Supporting Data for: The V30 Benchmark Set for Anharmonic Vibrational Frequencies of Molecular Dimers

description: Intermolecular vibrations are extremely challenging to describe but are the most crucial part for determining entropy and hence free energies, and enable for instance the distinction between different crystal-packing arrangements of the same molecule via THz spectroscopy. Herein, we introduce a benchmark data set - V30 - containing 30 small molecular dimers with intermolecular interactions ranging from exclusively van-der-Waals dispersion to systems with hydrogen bonds. All calculations are performed with the gold standard of Quantum Chemistry CCSD(T). We discuss vibrational frequencies obtained via different models starting with the harmonic approximation over independent Morse oscillators up to second-order vibrational perturbation theory (VPT2), which allows a proper anharmonic treatment including coupling of vibrational modes. However, large amplitude motions present in many low-frequency intermolecular modes are problematic for VPT2. In analogy to the often used treatment for internal rotations, we replace such problematic modes by a simple one-dimensional hindered rotor model. We compare selected dimers with available experimental data or high-level calculations of potential energy surfaces and show that VPT2 in combination with hindered rotors can yield a very good description of fundamental frequencies for the discussed subset of dimers involving small and semi-rigid molecules.This supporting dataset includes the calculated force constants, harmonic frequencies, Morse frequencies, VPT2 frequencies, and the optimized structures for the V30 dataset. See the included README.md file for more details. The related preprint can be found at https://doi.org/10.48550/arXiv.2209.04392.
DOI: 10.5281/zenodo.7059481
title: Supporting Data for: The V30 Benchmark Set for Anharmonic Vibrational Frequencies of Molecular Dimers

description: Intermolecular vibrations are extremely challenging to describe but are the most crucial part for determining entropy and hence free energies, and enable for instance the distinction between different crystal-packing arrangements of the same molecule via THz spectroscopy. Herein, we introduce a benchmark data set - V30 - containing 30 small molecular dimers with intermolecular interactions ranging from exclusively van-der-Waals dispersion to systems with hydrogen bonds. All calculations are performed with the gold standard of Quantum Chemistry CCSD(T). We discuss vibrational frequencies obtained via different models starting with the harmonic approximation over independent Morse oscillators up to second-order vibrational perturbation theory (VPT2), which allows a proper anharmonic treatment including coupling of vibrational modes. However, large amplitude motions present in many low-frequency intermolecular modes are problematic for VPT2. In analogy to the often used treatment for internal rotations, we replace such problematic modes by a simple one-dimensional hindered rotor model. We compare selected dimers with available experimental data or high-level calculations of potential energy surfaces and show that VPT2 in combination with hindered rotors can yield a very good description of fundamental frequencies for the discussed subset of dimers involving small and semi-rigid molecules.This supporting dataset includes the calculated force constants, harmonic frequencies, Morse frequencies, VPT2 frequencies, and the optimized structures for the V30 dataset. See the included README.md file for more details. The related preprint can be found at https://doi.org/10.48550/arXiv.2209.04392.