cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7385433
title: Phenomenology of Avalanche Recordings from Distributed Acoustic Sensing

description: This is the <strong>electronic supplemental data </strong>for the publication entitled <strong>"Phenomenology of Avalanche Recordings from Distributed Acoustic Sensing"</strong> submitted to the Journal of Geophysical Research (JGR): Earth Surface. The <strong><em>main_jupyter_notebook.ipynb </em></strong>shows an example workflow on how to read the data and utilize the Bayesian Gaussian Mixture Model on the extracted features to predict different classes (/clusters) within the avalanche recordings. The pre-print will be available on ESSOAr (currently processing submission, as of Dec1., 2022): https://doi.org/10.1002/essoar.10512949.1 <strong>Requirements</strong> Code was written in python 3.9.13 (from conda-forge), and the following packages are required (the version in the brackets are for which the code was tested): jupyter (versions see below) jupyter 1.0.0<br> jupyter_client 7.3.5<br> jupyter_console 6.4.3 <br> jupyter_core 4.11.2<br> jupyter_server 1.18.1<br> jupyterlab 3.4.4 <br> jupyterlab_pygments 0.1.2<br> jupyterlab_server 2.15.2<br> jupyterlab_widgets 1.0.0 numpy (1.23.3) pandas (1.4.4) scipy (1.9.3) matplotlib (versions see below) matplotlib-base 3.5.2 matplotlib-inline 0.1.6 cmocean (2.0 from channel conda-forge) sklearn (scikit-learn) (1.1.3)
description: Funding Acknowledgements: - ETH Zurich: ETH-01 16-2 (Patrick Paitz) - Swiss National Science Foundation: CRSK-2_190683 (Fabian Walter) - Swiss National Science Foundation: PP00P2_157551/2 (Fabian Walter) - Swiss National Science Foundation: 206021_113069/1 (Betty Sovilla)
DOI: 10.5517/ccdc.csd.cc1zvp1k
title: CCDC 1842889: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Mark I. Ogden, Matthew J. McIldowie, Mauro Mocerino|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.22178651.v1
title: Data to: Communities in infrastructure habitats are species-rich but only partly support species associated with semi-natural grasslands

description: Metadata for the study: Communities in infrastructure habitats are species-rich but only partly support species associated with semi-natural grasslands Summary This study makes part of the research project GINFRA – green rights-of-way infrastructure for biodiversity and ecosystem services. The aim of the project was to quantify whether linear infrastructure habitats (road verges and power-line corridors) support biodiversity by assessing the influence of the area of these habitats in the landscape, their contribution to landscape connectivity and population persistence. The linked data was collected by surveying butterflies, bumblebees, and vascular plants in five types of prevalent grasslands (pastures, road verges along small gravel roads, road verges along big paved roads, power line corridors, and field borders). These grasslands were embedded in 32 landscapes with an area of 4 km2 that differed in the area of linear infrastructure habitats (road verges and power line corridors) and semi-natural grasslands of high nature value, while other land-use types were kept constant. The landscapes were dominated by forest. Within each grassland habitat, the surveyor established a 200 m transect and then identified all butterflies and bumblebees along it. For plants, a 1 x 1 m quadrat was established at the centre of a 50 m section in each transect, i.e. each transect had four plots in which all plant species were identified. <br>
DOI: 10.5281/zenodo.7877487
title: Cascadia Subduction Zone Fault Heterogeneities from Newly Detected Small Earthquakes - Datasets

description: Datasets associated with manuscript "Cascadia Subduction Zone Fault Heterogeneities from Newly Detected Small Earthquakes" by Morton et al. (2023), submitted to the <em>Journal of Geophysical Research: Solid Earth</em>. Three datasets are present in this upload: <strong>ds01.xlsx</strong>: Catalog of 5,282 detected earthquakes along the Cascadia subduction margin, ordered by time. Events were located using Hypoinverse (Klein, 2002). Columns of the catalog are: Cascadia Initiative deployment year, Origin Time String (YYYYMMDDhhmmss), Origin Time (Year, Month, Day, Hour, Minute, Second), Latitude, Longitude, Event Depth (km), Duration Magnitude (Md), Number of P and S arrival picks with weights &gt; 0.1, Maximum Azimuthal Gap (deg.), Distance to the Nearest Station (km), Travel Time Residual RMS (s), Horizontal Location Error (ERH; km), Vertical Location Error (ERZ; km), Focal Mechanism if applicable (Strike, Dip, Rake; deg.), Plate Designation (Slab, Interface, or Upper Plate), and Previous Existence in Regional Catalogs. Duration magnitudes that could not be constrained are listed as -9. Detected earthquakes that had previously been reported in other catalogs are listed as "Catalog" or "Stone" form the regional or Stone et al. (2018) catalogs, respectively; Those used as template events are marked as "T" or "ST", for those from regional catalogs or the Stone et al. (2018) catalog, respectively, in the last column. <strong>ds02.xlsx</strong>: Table of earthquakes chosen as template events for subspace scanning from regional (NEIC, ANF, PNSN, CNDC) and Stone et al. (2018) catalogs. Columns of the template event table are: Catalog Source (T for regional, ST for Stone et al. 2018), Cascadia Initiative (CI) Deployment Year, Template Cluster ID, Date, Time (UTC), Catalog Location (Latitude, Longitude, Depth), Catalog Magnitude, and Whether the Template Event was Detected. Some of the templates were detected but were not included in the final catalog because the travel time residual RMS was greater than 1s and are noted in the table as "poorly located". <strong>ds03.xlsx</strong>: Table of seismic stations used in subspace detection scanning, identified by the CI deployment year, Template Cluster ID, Station SEED, and Network Codes. Stations are listed with the corresponding high-pass (HP) or band-pass (BP) filter applied before scanning to maximize the signal-to-noise ratio. References Klein, F. W. (2002). <em>User’s Guide to HYPOINVERSE-2000, a Fortran Program to Solve for Earthquake Locations and Magnitudes</em> (Open File Report 02-171). U.S Geological Survey. https://doi.org/10.3133/ofr02171 Stone, I., Vidale, J. E., Han, S., & Roland, E. (2018). Catalog of off-shore seismicity in Cascadia: Insights into the regional distribution of microseismicity and its relation to subduction processes. <em>Journal of Geophysical Research: Solid Earth, 123</em>, 1–12. https://doi.org/10.1002/2017JB014966
DOI: 10.17188/1200314
title: Materials Data on GaP by Materials Project

description: GaP is Zincblende, Sphalerite structured and crystallizes in the cubic F-43m space group. The structure is three-dimensional. Ga3+ is bonded to four equivalent P3- atoms to form corner-sharing GaP4 tetrahedra. All Ga–P bond lengths are 2.38 Å. P3- is bonded to four equivalent Ga3+ atoms to form corner-sharing PGa4 tetrahedra.
DOI: 10.3886/icpsr06841.v3
title: Latino National Political Survey, 1989-1990
title: Version 3

description: This data collection measures the political attitudes and behaviors of three specific Latino groups in the United States: Mexican, Puerto Rican, and Cuban. A geographic Latino population coverage rate of at least 85 percent was desired for this study. Variables cover the respondent's family history, organizational memberships, political participation, voting practices, preferences on policy issues, views toward political parties and political candidates/leaders, political behavior, sources of political information such as the media, feelings about political trust and efficacy, perceptions of the relationship between government and Latino groups, and degree of concern about international issues and social problems. Demographic variables include sex, age, ethnicity, marital status, education, education of parents and spouse, parental status, religious preference, employment status, occupation, home ownership, military service, country of origin, and citizenship.
description: Area probability national sample of Latino households from a selection of 40 Primary Sampling Units (PSUs) stratified based on Standard Metropolitan Statistical Areas (SMSAs) and rural counties. Initial sampling fractions were based on 1980 Census housing unit counts by Latino subgroup.
description: Datasets: DS0: Study-Level Files DS1: Data File DS2: Non-Latino Questionnaire (PDF) DS3: Latino Questionnaire (Spanish) (PDF) DS4: Latino Questionnaire (English) (PDF) DS10: Diskette D00326
description: Adult population (18 years and older) of the United States who are Puerto Rican, Mexican, or Cuban with one parent or at least two grandparents solely of Puerto Rican/Mexican/Cuban origin.
description: The codebook and data collection instruments are provided as Portable Document Format (PDF) files. The PDF file format was developed by Adobe Systems Incorporated and can be accessed using the Adobe Acrobat Reader. Information on how to obtain a copy of the Acrobat Reader is provided through the ICPSR Website on the Internet.
DOI: 10.5063/f1rr1wpz
title: 3 Year Telemetry Dataset

description: The dataset provided contains the information used to determine the overall shrub density around G. sila relocations from a 3 year telemetry dataset. Data including; location above or below ground, shrub density, cover, NDVI and mesohabitat are included. All sensitive data including coordinates for the locations of this species has been removed.
DOI: 10.5066/p9qlqsxv
title: Body composition data of grizzly bears in the Greater Yellowstone Ecosystem 2000-2020

description: Understanding evolutionary processes that drive population dynamics is critical in ecology. Measuring the performance-density relationship in long-lived mammalian species demands long-term data, limiting the ability to observe such mechanisms. We tested density-dependent (intrinsic) and density-independent (extrinsic) drivers of body composition of grizzly bears (Ursus arctos) in the Greater Yellowstone Ecosystem over two decades.
DOI: 10.5281/zenodo.6337421
title: TAU Urban Acoustic Scenes 2022 Mobile, Development dataset

description: TAU Urban Acoustic Scenes 2022 Mobile development dataset consists of 1-seconds audio segments from 10 acoustic scenes: Airport - <em>airport</em> Indoor shopping mall - <em>shopping_mall</em> Metro station - <em>metro_station</em> Pedestrian street - <em>street_pedestrian</em> Public square - <em>public_square</em> Street with medium level of traffic - <em>street_traffic</em> Traveling by a tram - <em>tram</em> Traveling by a bus - <em>bus</em> Traveling by an underground metro - <em>metro</em> Urban park - <em>park</em> The dataset contains in total 64 hours of audio.
DOI: 10.5281/zenodo.6415158
title: Supplementary Information for "Biased Borate Esterification during Nucleoside Phosphorylase-Catalyzed Reactions: Apparent Equilibrium Shifts and Kinetic Implications"

description: This is the external Supplementary Information for our publication "Biased Borate Esterification during Nucleoside Phosphorylase-Catalyzed Reactions: Apparent Equilibrium Shifts and Kinetic Implications". <strong>IMPORTANT: This is only the zero version. To access the dataset, see the most recent version</strong>(s) (either via the banner above or the version navigator to the right). The .pdf file contains the Supplementary Information: author contributions, accessibility statement, experimental procedures, additional discussions and supplementary items, among others. The .zip file contains the raw data and metadata for all items (supplementary and main text) as well as the calculation results. This includes UV, HPLC, NMR, DFT and MD results. To some extent, this work builds on and borrows from our previous publications on spectral unmixing (https://doi.org/10.3390/mps2030060, https://doi.org/10.1002/cbic.202000204), continuous reaction monitoring (https://doi.org/10.1021/acs.analchem.1c05356), and thermodynamic reaction control (https://doi.org/10.1002/adsc.201901230, https://doi.org/10.5281/zenodo.3568858, https://doi.org/10.1002/cphc.202000901, https://doi.org/10.1021/acscatal.1c02589).
description: This is the zero-version, solely containing the placeholder. To access the dataset, see the most recent version(s) (either via the banner above or the version navigator to the right).
DOI: 10.5517/cc5p5kk
title: CCDC 169308: Experimental Crystal Structure Determination

description: Related Article: K.Rissanen|2004|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/87bh23zxj2.1
title: Primate Genome Annotation

description: We uploaded the compressed file entitled as "Primate_Genome_Annotation_GFF_Files.zip". In this zip file, we described the genome annotations (GFF files) of 27 primate long-read sequencing genomes in the Phase 1 of Primate Long-Read Genome Sequencing Project. Meanwhile, their matched genome assemblies have been uploaded to the NCBI assembly database. For each gff annotation file of these primate genomes, it was named by the layout, species_name.annotation.gff.
DOI: 10.5519/0056541
title: Supplementary Material: Intraspecific size variation in planktonic foraminifera cannot be consistently predicted by the environment

description: The size structure of plankton communities is an important determinant of their functions in marine ecosystems. However, few studies have quantified how organism size varies within species across biogeographical scales. Here, we investigate how planktonic foraminifera, a ubiquitous zooplankton group, vary in size across the tropical and subtropical oceans of the world. Using a recently digitized museum collection, we measured shell area of 3,799 individuals of nine extant species in 53 seafloor sediments. We first analyzed potential size biases in the collection. Then, for each site, we obtained corresponding local values of mean annual sea‐surface temperature (SST), net primary productivity (NPP), and relative abundance of each species. Given former studies, we expected species to reach largest shell sizes under optimal environmental conditions. In contrast, we observe that species differ in how much their size variation is explained by SST, NPP, and/or relative abundance. While some species have predictable size variation given these variables (Trilobatus sacculifer, Globigerinoides conglobatus, Globigerinella siphonifera, Pulleniatina obliquiloculata, Globorotalia truncatulinoides), other species show no relationships between size and the studied covariates (Globigerinoides ruber, Neogloboquadrina dutertrei, Globorotalia menardii, Globoconella inflata). By incorporating intraspecific variation and sampling broader geographical ranges compared to previous studies, we conclude that shell size variation in planktonic foraminifera species cannot be consistently predicted by the environment. Our results caution against the general use of size as a proxy for planktonic foraminifera environmental optima. More generally, our work highlights the utility of natural history collections and the importance of studying intraspecific variation when interpreting macroecological patterns. ##Related materials: Marina C. Rillo, C. Giles Miller, M Kucera and THG Ezard (2020) Intraspecific size variation in planktonic foraminifera cannot be consistently predicted by the environment. Ecology and Evolution (in press) https://doi.org/10.1002/ece3.6792 Marina C. Rillo, M Kucera, THG Ezard and C. Giles Miller, (2019) Surface Sediment Samples From Early Age of Seafloor Exploration Can Provide a Late 19th Century Baseline of the Marine Environment. Frontiers in Marine Science 5:517; DOI: https://doi.org/10.3389/fmars.2018.00517 Marina C. Rillo, J. Whittaker, THG Ezard, A. Purvis, A.S. Henderson, S. Stukins & C.G. Miller, (2016) The unknown planktonic foraminiferal pioneer Henry A. Buckley and his collection at the Natural History Museum, London, Journal of Micropalaeontology, 36, 191-194, DOI: https://doi.org/10.1144/jmpaleo2016-020 Marina Costa Rillo (2016). Dataset: Henry Buckley Collection of Planktonic Foraminifera. Natural History Museum Data Portal (data.nhm.ac.uk). DOI: https://doi.org/10.5519/0035055
DOI: 10.5281/zenodo.8016759
title: CSV Trip Advisor restaurant NYC test

description: The CSV distribution of the Trip Advisor Newyork City restaurants Dataset used in the NeIC spring 2023 FAIR training.
DOI: 10.5281/zenodo.8016758
title: CSV Trip Advisor restaurant NYC test

description: The CSV distribution of the Trip Advisor Newyork City restaurants Dataset used in the NeIC spring 2023 FAIR training.
DOI: 10.5281/zenodo.8016447
title: Study rat ecology using dark fiber sensing

description: # Publicly available data to study rat ecology using dark fiber sensing This dataset aims to support the research presented in: **"Uncovering cryptic rat ecology via dark fiber traps"** Dark fiber distributed acoustic sensing (DAS) was deployed along 20 km of unused fiber optic cable spanning diverse habitats in Yudu County, China. Recordings were made from June 26 to August 3, 2021 at: | Parameter | Value |<br> | :-------------- | :---: |<br> | Gauge length | 10m |<br> | Channel spacing | 10m |<br> | Sampling rate | 500Hz | Data from 810 meters of fiber in an inaccessible mountain tunnel detected rat activity. Data files are provided in the following formats: ## DAS data Saved as ***.npz*** files with names in YYYYMMDD_HHMMSS format. Each file contains: - data: Phase difference measured by the DAS system<br> - timestamp: Date and time (UTC+8) of each sample<br> - distance_along_tunnel: Distance along the cable from the tunnel entrance **Key files:** - 20210804_042600.npz contains data used for Figure 2<br> - 20210724_220726.npz contains data used for Figure 3 ## Figures Corresponding .jpg figures with same filenames. ## Movies Movie S1: Video of a wild rat entering Qiaotou Tunnel via drain. ## Metadata files Data S1: Excel sheets with metadata on rat activity events.<br> Data S2: Processed data at 1-hour resolution with meteorological data.<br> Data S3: Data used to create specific figures. **Please contact the authors for:** - Detailed descriptions of each data file<br> - Assistance accessing or interpreting the data<br> - Information regarding data storage sizes (from 100s MB to several GB) The aim is to make this dataset as useful, understandable and reusable as possible for future rat ecology research. Please provide feedback to improve the documentation!
DOI: 10.5281/zenodo.8016446
title: Study rat ecology using dark fiber sensing

description: # Publicly available data to study rat ecology using dark fiber sensing This dataset aims to support the research presented in: **"Uncovering cryptic rat ecology via dark fiber traps"** Dark fiber distributed acoustic sensing (DAS) was deployed along 20 km of unused fiber optic cable spanning diverse habitats in Yudu County, China. Recordings were made from June 26 to August 3, 2021 at: | Parameter | Value |<br> | :-------------- | :---: |<br> | Gauge length | 10m |<br> | Channel spacing | 10m |<br> | Sampling rate | 500Hz | Data from 810 meters of fiber in an inaccessible mountain tunnel detected rat activity. Data files are provided in the following formats: ## DAS data Saved as ***.npz*** files with names in YYYYMMDD_HHMMSS format. Each file contains: - data: Phase difference measured by the DAS system<br> - timestamp: Date and time (UTC+8) of each sample<br> - distance_along_tunnel: Distance along the cable from the tunnel entrance **Key files:** - 20210804_042600.npz contains data used for Figure 2<br> - 20210724_220726.npz contains data used for Figure 3 ## Figures Corresponding .jpg figures with same filenames. ## Movies Movie S1: Video of a wild rat entering Qiaotou Tunnel via drain. ## Metadata files Data S1: Excel sheets with metadata on rat activity events.<br> Data S2: Processed data at 1-hour resolution with meteorological data.<br> Data S3: Data used to create specific figures. **Please contact the authors for:** - Detailed descriptions of each data file<br> - Assistance accessing or interpreting the data<br> - Information regarding data storage sizes (from 100s MB to several GB) The aim is to make this dataset as useful, understandable and reusable as possible for future rat ecology research. Please provide feedback to improve the documentation!
DOI: 10.6084/m9.figshare.21511677.v7
title: Characteristics of immune cell infiltration in inflamed mucosa of ulcerative colitis patients, hub gene candidates and key pathways in intestinal macrophage.

description: Tissue RNA was isolated from fresh mouse colon sample by Trizol reagent. Total RNA (1 µg) was reverse-transcribed using a reverse transcriptase kit (TakaRa, cat. RR036A-1, Tokyo, Japan). Hieff® qPCR SYBR Green Master Mix (Yeasen Biotechnolog, cat. 11201ES03, Shanghai, China) was used for Real-time qPCR. The comparative cycle threshold (Ct) method (2−ΔΔCT) was used to calculate relative expression, β-actin was used as the internal reference. We evaluated immunostaining by multiplying the intensity score and proportion score. Intensity score according to the intensity of cell staining: 0 for no positive staining (negative), 1 for light yellow (weakly positive), 2 for brown (positive) and 3 for dark brown (strongly positive). Proportion score according to the percentage of positive cells: 1 for ≤25%, 2 for 26%-50%, 3 for 51%-75% and 4 points for &gt; 75%.
DOI: 10.5519/qd.qg255u3a
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (22529 records)
DOI: 10.5281/zenodo.8016763
title: RDF Turtle Trip Advisor restaurant NYC test

description: The RDF Turtle distribution of the Trip Advisor Newyork City restaurants Dataset used in the NeIC spring 2023 FAIR training.
DOI: 10.5281/zenodo.8016762
title: RDF Turtle Trip Advisor restaurant NYC test

description: The RDF Turtle distribution of the Trip Advisor Newyork City restaurants Dataset used in the NeIC spring 2023 FAIR training.
DOI: 10.5519/qd.ymr29a07
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (123 records)
DOI: 10.5519/qd.jncyv9ss
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1136 records)
DOI: 10.25949/22730207
title: Associations Between Moral Disengagement, Negative Self-Evaluation, and Morally Injurious Behavior in Young People - Dataset

description: Corresponding data for the study "Associations Between Moral Disengagement, Negative Self-Evaluation, and Morally Injurious Behavior in Young People". This study investigates the moderating effect of moral disengagement on negative self-evaluation when committing morally injurious behavior. Participants were 307 undergraduate students who completed validated measures of morally injurious conduct (committed with agency, and under duress), moral disengagement, and negative self-evaluation (shame and guilt). Findings demonstrated that the role of moral disengagement in attenuating negative self-evaluation was present in conduct committed under duress, and not in conduct committed with agency.