cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19127057.v2
title: Data and scripts for ELIC agonism and antagonism study

description: For performing SCA on our Alignments: Multiple Sequence Alignment and Matlab scripts to run Statistical Coupling Analysis to reproduce our results on sector positions for our manuscript on ELIC. Lists of the UniRef100 accession codes for the proteins in the alignments are also provided. <br> The Matlab scripts (*.m extension) contain must of the comments from tutorials of the original SCA v5.0 toolbox (Ranganathan Lab). The comments were edited in accordance to our particular input data and the outputs we were obtaining at each step. <br> To run these scripts it is necessary: -MATLAB with the Bioinformatics Toolbox, as well as the Statistics and Machine Learning Toolbox.<br> -SCA v5.0 toolbox from Ranganathan Lab. For more details please refer to their 2012 paper (https://doi.org/10.1038/nature11500) -The results on the sector positions will be printed in the Command Window of MATLAB <br> For the TEVC analyses (Source_Data.zip): <br> - The raw TEVC data is reported in the "Raw_TEVC_Traces" folder for each figure. <br> - Using the "Plotting_TEVC_Traces.R" script the TEVC plots shown in the manuscript can be generated (without the concentration annotations). <br> - All data presented in dose response curves or bar graphs were acquired by processing the TEVC traces. The steps are detailed in the file <br> "Processing_TEVC_traces" within each figures folder.<br>
DOI: 10.34740/kaggle/dsv/4360446
title: News Articles
DOI: 10.6084/m9.figshare.21375618
title: All_barcodes_ONT.gz

description: Oxford Nanopore Sequencing Data ot ITS amplicons. <br> Q14 filtered for reads 200-800 bases in size. <br> Note- you many need to add a .gz to the end of the file after downloading fo a MacOSx to recognize and open the file.
DOI: 10.6084/m9.figshare.21375618.v1
title: All_barcodes_ONT.gz

description: Oxford Nanopore Sequencing Data ot ITS amplicons. <br> Q14 filtered for reads 200-800 bases in size. <br> Note- you many need to add a .gz to the end of the file after downloading fo a MacOSx to recognize and open the file.
DOI: 10.5281/zenodo.7231893
title: Jupiter Notebook and example data for "Prospects for a camera-based detector for Neutron Reflectometry"

description: We report the outcome of a proof-of-principle (IPTS-29165) neutron reflectivity measurement obtained using a neutron scintillator and a Photonis (brand) camera. We were motivated to test this technology because it provides much better spatial resolution and count rate capability than the BL4A <sup>3</sup>He position sensitive detector (Table 1). The report describes the detector setup, challenges encountered, a reflectivity measurement and next steps. Two example measurements are provided and a Jupyter Notebook to create a NumPy binary file consisting of event positions and times.
DOI: 10.5281/zenodo.7231892
title: Jupiter Notebook and example data for "Prospects for a camera-based detector for Neutron Reflectometry"

description: We report the outcome of a proof-of-principle (IPTS-29165) neutron reflectivity measurement obtained using a neutron scintillator and a Photonis (brand) camera. We were motivated to test this technology because it provides much better spatial resolution and count rate capability than the BL4A <sup>3</sup>He position sensitive detector (Table 1). The report describes the detector setup, challenges encountered, a reflectivity measurement and next steps. Two example measurements are provided and a Jupyter Notebook to create a NumPy binary file consisting of event positions and times.
DOI: 10.6084/m9.figshare.21359453
title: Sickle cell disease in gulf cooperation council countries: a systematic review

description: Evidence related to the national burden of Sickle Cell Disease (SCD) in Gulf Cooperation Council (GCC) largely fragmented. Thus, the aim of this study is to systemically review studies from GCC countries to assess the epidemiological profile of SCD. We searched combinations of key terms in MEDLINE/PubMed, CINAHL, and EMBASE. We selected relevant observational studies reporting the frequency, incidence, prevalence, risk factors, mortality rate, and complications of SCD among the GCC population. Studies restricted to laboratory diagnostic tests, experimental and animal studies, review articles, case reports and series, and conference proceedings and editorials were excluded. A total of 1,347 articles were retrieved, out of which 98 articles were found to be eligible and included in the study. The total number of participants from all the included studies was 3,496,447. The prevalence of SCD ranged from 0.24%–5.8% across the GCC and from 1.02%–45.8% for the sickle cell trait. Consanguineous marriage was a risk factor for likely giving children affected with hemoglobinopathies. The prevalence of SCD and its complications vary among GCC. Because of the high prevalence of SCD and its complications, health authorities should focus on more rigorous prevention and treatment strategies.
DOI: 10.6084/m9.figshare.21359453.v1
title: Sickle cell disease in gulf cooperation council countries: a systematic review

description: Evidence related to the national burden of Sickle Cell Disease (SCD) in Gulf Cooperation Council (GCC) largely fragmented. Thus, the aim of this study is to systemically review studies from GCC countries to assess the epidemiological profile of SCD. We searched combinations of key terms in MEDLINE/PubMed, CINAHL, and EMBASE. We selected relevant observational studies reporting the frequency, incidence, prevalence, risk factors, mortality rate, and complications of SCD among the GCC population. Studies restricted to laboratory diagnostic tests, experimental and animal studies, review articles, case reports and series, and conference proceedings and editorials were excluded. A total of 1,347 articles were retrieved, out of which 98 articles were found to be eligible and included in the study. The total number of participants from all the included studies was 3,496,447. The prevalence of SCD ranged from 0.24%–5.8% across the GCC and from 1.02%–45.8% for the sickle cell trait. Consanguineous marriage was a risk factor for likely giving children affected with hemoglobinopathies. The prevalence of SCD and its complications vary among GCC. Because of the high prevalence of SCD and its complications, health authorities should focus on more rigorous prevention and treatment strategies.
DOI: 10.5517/ccdc.csd.cc2bdlr3
title: CCDC 2157065: Experimental Crystal Structure Determination

description: Related Article: Zhifeng Xiao, Hannah F. Drake, Gregory S. Day, Jason E. Kuszynski, Hengyu Lin, Haomiao Xie, Peiyu Cai, Matthew R. Ryder, Hong-Cai Zhou|2022|Cell Reports Physical Science|3|101074|doi:10.1016/j.xcrp.2022.101074
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bf0yr
title: CCDC 2157474: Experimental Crystal Structure Determination

description: Related Article: Koji Nishimoto, Haruka Taue, Takehito Ohji, Sayaka Funakoshi, Yasuhiro Ohki, Masamichi Ogasawara|2022|Org.Lett.|24|7355|doi:10.1021/acs.orglett.2c02888
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bf0zs
title: CCDC 2157475: Experimental Crystal Structure Determination

description: Related Article: Koji Nishimoto, Haruka Taue, Takehito Ohji, Sayaka Funakoshi, Yasuhiro Ohki, Masamichi Ogasawara|2022|Org.Lett.|24|7355|doi:10.1021/acs.orglett.2c02888
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bk020
title: CCDC 2161291: Experimental Crystal Structure Determination

description: Related Article: Yuan-Yuan Feng, Chang-E Dong, Rui Li, Xiao-Qing Zhang, Wei Wang, Xing-Rui Zhang, Wei-Wei Liu, Da-Hua Shi|2022|J.Mol.Struct.|1271|133982|doi:10.1016/j.molstruc.2022.133982
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bk042
title: CCDC 2161293: Experimental Crystal Structure Determination

description: Related Article: Yuan-Yuan Feng, Chang-E Dong, Rui Li, Xiao-Qing Zhang, Wei Wang, Xing-Rui Zhang, Wei-Wei Liu, Da-Hua Shi|2022|J.Mol.Struct.|1271|133982|doi:10.1016/j.molstruc.2022.133982
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bk053
title: CCDC 2161294: Experimental Crystal Structure Determination

description: Related Article: Yuan-Yuan Feng, Chang-E Dong, Rui Li, Xiao-Qing Zhang, Wei Wang, Xing-Rui Zhang, Wei-Wei Liu, Da-Hua Shi|2022|J.Mol.Struct.|1271|133982|doi:10.1016/j.molstruc.2022.133982
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bnjk3
title: CCDC 2164685: Experimental Crystal Structure Determination

description: Related Article: Yong-Sheng Shi, Dong-Dong Yang, Han-Wen Zheng, Qiong-Fang Liang, Yu-Hui Fang, Tong Xiao, Xiang-Jun Zheng|2022|Inorg.Chem.|61|15973|doi:10.1021/acs.inorgchem.2c02249
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7231920
title: Crossref datadump extraction for benchmarking purpose of Jsonpath

description: Several aggregation of Crossref datadump to amplify the size for benchmarking purpose.
DOI: 10.5281/zenodo.7231919
title: Crossref datadump extraction for benchmarking purpose of Jsonpath

description: Several aggregation of Crossref datadump to amplify the size for benchmarking purpose.
DOI: 10.5281/zenodo.7225574
title: json AST of a C file

description: This piece of code is randomly chosen in Software Heritage popular piece of code. It is selected<br> by the size of its AST. To generate the AST the command is: <br> `clang -Xclang -ast-dump=json -fsyntax-only parse_date.c &gt; ast.json`
DOI: 10.5281/zenodo.7225575
title: json AST of a C file

description: This piece of code is randomly chosen in Software Heritage popular piece of code. It is selected<br> by the size of its AST. To generate the AST the command is: <br> `clang -Xclang -ast-dump=json -fsyntax-only parse_date.c &gt; ast.json`
DOI: 10.5281/zenodo.7231935
title: json AST of a C file

description: This piece of code is randomly chosen in Software Heritage popular piece of code. It is selected<br> by the size of its AST. To generate the AST the command is: <br> `clang -Xclang -ast-dump=json -fsyntax-only parse_date.c &gt; ast.json`
DOI: 10.6084/m9.figshare.21375651
title: Data set.xlsx

description: In this data set 306 scales were included in the study. Of the teachers participating in the study, 228 were female and 78 were male. 246 teachers work in public schools, while 59 work in private institutions. In this study, job satisfaction scale, organizational culture scale, brief psychological resilience scale and brief symptom inventory were used. "Organizational Culture Scale (OCS)" was developed by Glaser et al. (1987) and adapted into Turkish by Öztürk (2015) and is a 5-point Likert scale (1= Strongly Disagree, 5= Strongly Agree). It consists of 31 items and 6 sub-dimensions: teamwork (T), moral values (MV), information flow (IF), participation (P), supervision (S) and meeting (M). "Job Diagnostic Survey (JDS)" was developed by Hackman and Oldham (1975) and adapted for school organizations and teachers by Taşdan (2008). The scale is one-dimensional, has 14 items and is 5-point Likert scale (1=Not at all satisfies me, 5=Satisfies me very much). Brief Resilience Scale (BRS) is a scale developed by Smith et al. (2008) to measure the psychological resilience of individuals. The 5-point Likert-type scale consisting of 6 items was adapted into Turkish by Doğan (2015). The ‘I don't agree at all’ option is rated as 1 and the ‘I completely agree’ option is rated as 5 on the scale. Getting a high score from the scale shows that psychological resilience is high. The Brief Symptom Inventory (BSI) is a Likert-type self-assessment scale that screens for mental symptoms and consists of 53 items and five subscales: anxiety, depression, negative self, somatization and anger. The score range is between 0-212. The scale can be applied to adolescent and adult individuals and groups. There is no time limit for answering the scale. The BSI is a scale consisting of 53 questions that individuals define themselves, aimed at recognizing and measuring various psychological symptoms.
DOI: 10.5281/zenodo.7228150
title: Mobility-aware Dataset

description: If you use this dataset, please cite the following paper: John Violos, Theodoros Theodoropoulos, Angelos-Christos Maroudis, Aris Leivadeas, and Konstantinos. Tserpes, “Self-Attention based Encoder-Decoder for Multistep Human Density Prediction,” Elsevier in Journal of Urban Mobility, vol. 2, p. 100022, Dec. 2022, doi: 10.1016/j.urbmob.2022.100022. <br> The simulation took place from 2021-07-16 to 2021-07-23 in the New York Central park with SUMO (Simulation of Urban MObility) [2]. The New York Central park is divided into six Regions Of Interest (ROI) and every time step we estimated the number of people gathered into every ROI as we can see in Fig. 1. We used a time step of 5 mins. In the file Final_regions_timestep.csv the 1st column represents the number of the step and the following six steps represent the six ROIs. In the files 5min_timestep_Day_i.csv (with i from 1 to 7) we can see the SUMO generated data for the i day of the simulation. In every row we can see the id of the pedestrian, the date, the timestamp, the latitude, the longitude. The sixth and the seventh columns are not taken into consideration in our experiments. The sixth column is a constant of SUMO and the seventh is the velocity of the pedestrians. More info can be found in the Dataset Description
DOI: 10.5281/zenodo.7228151
title: Mobility-aware Dataset

description: If you use this dataset, please cite the following paper: John Violos, Theodoros Theodoropoulos, Angelos-Christos Maroudis, Aris Leivadeas, and Konstantinos. Tserpes, “Self-Attention based Encoder-Decoder for Multistep Human Density Prediction,” Elsevier in Journal of Urban Mobility, vol. 2, p. 100022, Dec. 2022, doi: 10.1016/j.urbmob.2022.100022. <br> The simulation took place from 2021-07-16 to 2021-07-23 in the New York Central park with SUMO (Simulation of Urban MObility) [2]. The New York Central park is divided into six Regions Of Interest (ROI) and every time step we estimated the number of people gathered into every ROI as we can see in Fig. 1. We used a time step of 5 mins. In the file Final_regions_timestep.csv the 1st column represents the number of the step and the following six steps represent the six ROIs. In the files 5min_timestep_Day_i.csv (with i from 1 to 7) we can see the SUMO generated data for the i day of the simulation. In every row we can see the id of the pedestrian, the date, the timestamp, the latitude, the longitude. The sixth and the seventh columns are not taken into consideration in our experiments. The sixth column is a constant of SUMO and the seventh is the velocity of the pedestrians. More info can be found in the Dataset Description
DOI: 10.5281/zenodo.7228101
title: Ferryhopper Dataset

description: Workload Trace for Users Spanning in 3 days for an e-commerce application acquired by Ferryhopper company. <br> The time difference between each row represents half an hour. https://www.ferryhopper.com/
DOI: 10.5281/zenodo.7228102
title: Ferryhopper Dataset

description: Workload Trace for Users Spanning in 3 days for an e-commerce application acquired by Ferryhopper company. <br> The time difference between each row represents half an hour. https://www.ferryhopper.com/
DOI: 10.5281/zenodo.7225629
title: Dataset for High-resolution mantle flow models reveal importance of plate boundary geometry and slab pull forces on generating tectonic plate motions

description: This repository contains the plugin and dataset used to setup models in the manuscript: "High-resolution mantle flow models reveal importance of plate boundary geometry and slab pull forces on generating tectonic plate motions". The material model plugin used in our models is in the "plugins" folder. The "models" folder contains the reference input parameter file described in the paper. All other model configurations shown in the paper can be obtained by modifying this parameter file. The input files used to set up the models are in the respective folder. Additionally, the Jupyter notebook used to compute residuals of our models is provided in the "scripts" folder.
DOI: 10.5281/zenodo.7225628
title: Dataset for High-resolution mantle flow models reveal importance of plate boundary geometry and slab pull forces on generating tectonic plate motions

description: This repository contains the plugin and dataset used to setup models in the manuscript: "High-resolution mantle flow models reveal importance of plate boundary geometry and slab pull forces on generating tectonic plate motions". The material model plugin used in our models is in the "plugins" folder. The "models" folder contains the reference input parameter file described in the paper. All other model configurations shown in the paper can be obtained by modifying this parameter file. The input files used to set up the models are in the respective folder. Additionally, the Jupyter notebook used to compute residuals of our models is provided in the "scripts" folder.
DOI: 10.18112/openneuro.ds003710.v1.0.2
title: APPLESEED Example Dataset
DOI: 10.18112/openneuro.ds004299.v1.0.0
title: Characterizing habit learning in the human brain at the individual and group levels: a multi-modal MRI study
DOI: 10.6084/m9.figshare.21127777
title: Table_Brett

description: sasdaD
DOI: 10.6084/m9.figshare.21127777.v6
title: Table_Brett

description: sasdaD
DOI: 10.6084/m9.figshare.21127777.v5
title: Table_Unassigned

description: sasdaD
DOI: 10.6084/m9.figshare.3761562.v2377
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.7217739
title: Base de datos resultado del proyecto "Twitter como plataforma de difusión de la literatura venezolana del siglo XXI (2000-2022)"

description: Este archivo es el resultado de la extracción de datos del trabajo de pregrado titulado "Twitter como plataforma de difusión de la literatura venezolana del siglo XXI (2000-2022)", el cual se basó en la sociología de la literatura y las humanidades digitales. El texto completo puede ser consultado en el Repositorio de la Universidad de Antioquia: https://bibliotecadigital.udea.edu.co/
description: Este proyecto recibió dineros del Fondo para Apoyar los Trabajos de Grado de Pregrado, financiado por la Facultad de Comunicaciones y Filología y por el Comité para el Desarrollo de la Investigación de la Universidad de Antioquia
DOI: 10.5281/zenodo.7217738
title: Base de datos resultado del proyecto "Twitter como plataforma de difusión de la literatura venezolana del siglo XXI (2000-2022)"

description: Este archivo es el resultado de la extracción de datos del trabajo de pregrado titulado "Twitter como plataforma de difusión de la literatura venezolana del siglo XXI (2000-2022)", el cual se basó en la sociología de la literatura y las humanidades digitales. El texto completo puede ser consultado en el Repositorio de la Universidad de Antioquia: https://bibliotecadigital.udea.edu.co/
description: Este proyecto recibió dineros del Fondo para Apoyar los Trabajos de Grado de Pregrado, financiado por la Facultad de Comunicaciones y Filología y por el Comité para el Desarrollo de la Investigación de la Universidad de Antioquia
DOI: 10.17632/ddfgdxtrpm.1
title: Passive Acoustic Monitoring of Bedload with Drifted Hydrophone

description: These data support the paper manuscript entitled  "Passive Acoustic Monitoring of Bedload with Drifted Hydrophone" submitted to Journal of Hydraulic Engineering (JHE).
The folder  "Acoustic Samples" contains acoustic measurements samples labeled with the name of each river and the date of measurement. 
The Excel table "Acoustic_Power_Drifts.xlsx" contains, for each river, the acoustic power calculated for each drift and the corresponding position.
DOI: 10.17632/ddfgdxtrpm.2
title: Passive Acoustic Monitoring of Bedload with Drifted Hydrophone

description: These data support the paper manuscript entitled  "Passive Acoustic Monitoring of Bedload with Drifted Hydrophone" submitted to Journal of Hydraulic Engineering (JHE).
The folder  "Acoustic Samples" contains acoustic measurements samples labeled with the name of each river and the date of measurement. 
The Excel table "Acoustic_Power_Drifts.xlsx" contains, for each river, the acoustic power calculated for each drift and the corresponding position.
DOI: 10.17632/s8tfpv7f62.1
title: Grain size and foraminifera in Holocene sediments of Ningbo Plain

description: This dataset includes grain size and foraminifera obtained from a sediment core XY in the Ningbo Plain, East China. These data revealed two events of enhanced transgression at ca. 8.8 and 7.6 ka.
DOI: 10.17632/5mc5zv7kz9.1
title: Ocean acidification metrics (pH and aragonite saturation state) in the western North Pacific in August 2018

description: Total hydrogen ion scale pH and aragonite saturation state  along the 147°E (21-39°N) section in the western North Pacific in August 2018. Seawater aragonite saturation state and total hydrogen ion scale pH values were calculated from the concentrations of dissolved inorganic carbon, total alkalinity, temperature, salinity, phosphate, silicate and pressure data using the CO2SYS.xls program (Version 24). The anthropogenic CO2  value in subsurface water below 100 m was calculated using the TrOCA method (Touratier et al., 2007).
DOI: 10.17632/bbwfs9p2nk.1
title: Will Earth’s next supercontinent assemble through the closure of the Pacific Ocean? 

description: It contains
1. the Source code (Code.tar.gz) 
2. data for the figures, a ParaView state file for figure 2, and a sample script (ocean_visc_LLSVPs_grad.sh) for drawing.