cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6j018/15
title: In Vivo Evaluation - Tumor Growth and Auto Exposure Data

description: This excel file contains all raw tumor growth measurements and graphs for in vivo efficacy evaluation (Fig 8). This file also contains the compiled exposure times generated for Fig 10.
DOI: 10.5061/dryad.6j018/16
title: In Vivo Imaging Sample Image - Day 7 - White Light - Raw

description: This file is a raw jpeg generated for Fig 9. It depicts imaging of a mouse in group 3 imaged under white light as described in the methods section.
DOI: 10.5061/dryad.6j018/17
title: In Vivo Imaging Sample Image - Day 7 - Infrared - Raw

description: This file is a raw jpeg generated for Fig 9. It depicts a mouse in group 3 imaged under an infrared filter set as described in the methods section.
DOI: 10.5061/dryad.6j018/18
title: In Vivo Imaging Sample Image - Day 7 - Infrared - False Color

description: This file is a jpeg generated for Fig 9. It depicts a mouse in group 3 imaged under an infrared filter as described in the methods section. Red false color has been added with Pxlr editor as described in the methods section.
DOI: 10.5061/dryad.6j018/19
title: In Vivo Evaluation - ANOVA Analysis

description: This file contains the statistical analysis of the data generated for Fig 8.
DOI: 10.5061/dryad.7c63h/5
title: Schinia mortua survival

description: This file holds survival data of Schinia mortua larvae placed in Grindelia ciliata capitula.
DOI: 10.5061/dryad.7c63h/6
title: Grindelia ciliata Field Emergence

description: This file contains all G. ciliata seedling emergence events.
DOI: 10.5061/dryad.7c63h/7
title: Achene Consumption by S. mortua

description: This file contains the number and proportion of consumed and non-consumed G. ciliata achenes for each of the oviposition treatments.
DOI: 10.5061/dryad.7c63h/8
title: Achene Consumption with Capitulum Opening and Inoculation Dates

description: Achene Consumption with Capitulum Opening and Inoculation Dates
DOI: 10.5061/dryad.7df44/1
title: Inbreeding effects on bird song

description: In this datafile, all syllables sang in 240 (s) of continuous song are noted for 9 outbred birds, 9 inbred birds, and 9 tutor birds. The duration, amplitude, frequency modulation (FM), mean frequency, and entropy of these syllables are noted. Inbred and outbred birds were reared together in presence of a tutor bird (tutor-tutee groups), and, thus, song learning, and song expression could be compared between inbred and outbred birds.
DOI: 10.5061/dryad.7df44/2
title: Female investment in inbred and outbred males

description: The clutch investment of outbred females mated with an inbred male, or an outbred male, is noted in this file. It is also noted how many eggs females laid, and the weight of each egg.
DOI: 10.5061/dryad.7df44/3
title: The song bout length of inbred and outbred males

description: The song duration of each song for 9 inbred birds, 9 outbred birds, and 9 tutor birds is noted in this file.
DOI: 10.5061/dryad.80n42/1
title: Maximum clade credibility tree (789 species)

description: Maximum clade credibility (MCC) phylogeny of 789 species of the Corvides as recognized by the IOC v.2.7. This phylogeny is based on a bayesian analyses of mitochondrial and nuclear DNA sequences for 665 species. The remaining 124 species for which sequence data was unavailable were added as polytomies to the phylogeny based on this taxonomic knowledge, before a birth-death model was used to resolve the polytomies and assign branch lengths. This process generated a fully bifurcating tree for 789 corvoid species.
DOI: 10.5061/dryad.8g5n6/1
title: GeneticData_2012-2013

description: This file contains genetic data (8 microsatellites) for the 74 nematode populations sampled in 2012 and 2013 in Fstat format.
DOI: 10.5061/dryad.8g5n6/2
title: PopulationCodeAndSpatialCoordinates

description: This file contains the name and the spatial localisation (x and y coordinates) corresponding to nematode population codes used in the file GeneticData_2012-2013.dat.
DOI: 10.5061/dryad.b5k79/1
title: Supplementary Table 1

description: Completeness scores of main skeletal sections. Abbreviations: Bol: Bolosauria; Lan: Lanthanosuchoidea; Mes: Mesosauridae; Mil: Millerosauria; Nyc: Nycteroleteroidea; Par: Pareiasauria; Pro: Procolophonoidea. SCM and CCMa columns are the main values (same as in table 4).
DOI: 10.5061/dryad.b5k79/2
title: Supplementary Table 2

description: Results of the three completeness metrics, assigned stratigraphical age, completeness model and clade for the 76 parareptile genera considered in this study. Abbreviations used for stratigraphical ages are the same as in Figs. 4 and 6 except for Induan (IND) and Changhsingian (CHA). Abbreviations used for model used and clade assignment are the same as in Fig. 7.
DOI: 10.5061/dryad.gh168/1
title: TiputiniPasseriformMalariaMatrix

description: Association matrix of resident passerine birds and their haemosporidian (Plasmodium and Haemoproteus) parasites in the Tiputini Biodiversity Station, Ecuador. Sampling years 2001 - 2010.
DOI: 10.5061/dryad.gh168/2
title: MEC-16-0567SpecificityIndices_HostTraits

description: Table 1. Parasite lineages recovered in the Tiputini Biodiversity station,  their GenBank ID, sample size, host breadth (number of host species used), specialization category (ND = not determined due to small sample size, Generalist = not significantly restricted distribution on hosts, Specialist = significantly restricted distribution on hosts), mean phylogenetic distance (MPD) and corresponding z-score (DSI), mean phylogenetic distance weighted by frequency (wMPD) and corresponding z-score (wDSI), and non-phylogenetic frequency distribution on hosts (d) and corresponding z-score.Table 2. Host species included in analyses, their sample size, type of host (harboring at least one specialist or only generalists), abundance, mean mass, apparent survival rate, and GenBank ID for the RAG-1 gene.  Abundance estimates are from (Blake 2007), survival rates are from (Blake & Loiselle 2013), and masses are unpublished data from JGB.
DOI: 10.5061/dryad.hj278/1
title: LEP62 amino acid custom substitution rate matrix for Lepidoptera

description: LEP62 custom amino acid substitution matrix constructed from the 5,152-gene moth+min-one-butterfly database
DOI: 10.5061/dryad.hj278/2
title: List of 2,212 genes (orthologous groups) included in the final data matrix

description: List of the 2,212 genes in the final data matrix, which have survived the PTP paralogy filter and are represented in at least 21 taxa. The gene numbers in this list were assigned arbitrarily during construction of our 5,152-gene moth+min-one-butterfly database. Each of these numbers, however, also corresponds to a Bombyx gene number taken from Ensembl (and hence SilkDB), as shown in the file 'bombyx_annotation_5152_OGs.txt'.
DOI: 10.5061/dryad.hj278/3
title: lep_non_ditrysia_28_taxa_2212_OGs_consensus_cols_removed_degen1

description: Data matrix in fasta format  for degen1 analysis
DOI: 10.5061/dryad.hj278/4
title: lep_non_ditrysia_28_taxa_2212_OGs_consensus_cols_removed_degen1

description: Data matrix in Phylip format for degen1 analysis.
DOI: 10.5061/dryad.rq00r/1
title: Khan et al. Raw Data

description: Raw data used in this publication. This includes clutch information, juvenile morphometrics, and survival.
DOI: 10.17632/7z6fdhkxwz.1
title: Codes and Datasets for (A clustering based forecasting algorithm for multivariable fuzzy time series using linear combinations of independent variables)

description: Dear Researcher, Thank you for using this code and datasets. I explain how CFTS code related to my paper "A clustering based forecasting algorithm for multivariable fuzzy time series using linear combinations of independent variables" published in Applied Soft Computing works. All datasets mentioned in the paper accompanied with CFTS code are included. If there is any question feel free to contact me at: bas_salaraskari@yahoo.com s_askari@aut.ac.ir Regards, S. Askari Guidelines for CFTS algorithm: 1. Open the file CFTS Code using MATLAB. 2. Enter or paste name of the dataset you wish to simulate in line 5 after "load". It loads the dataset in the workplace. 3. Lines 6 and 7: "r" is number of independent variables and "N" is number of data vectors used for training. 4. Line 9: "C" is number of clusters. You can use the optimal number of clusters given in Table 6 of paper or your own preferred value. 5. If line 28 is "comment", covariance norm (Mahalanobis distance) is use and if it is "uncomment", identity norm (Euclidean distance) is used. 6. For your own dataset, please arrange the data as the datasets given here. For details. please read the "Read Me" included here.
DOI: 10.17632/7z6fdhkxwz.2
title: Codes and Datasets for (A clustering based forecasting algorithm for multivariable fuzzy time series using linear combinations of independent variables)

description: Dear Researcher, Thank you for using this code and datasets. I explain how CFTS code related to my paper "A clustering based forecasting algorithm for multivariable fuzzy time series using linear combinations of independent variables" published in Applied Soft Computing works. All datasets mentioned in the paper together with CFTS code are included. If there is any question feel free to contact me at: bas_salaraskari@yahoo.com s_askari@aut.ac.ir Regards, S. Askari
DOI: 10.17632/n5fvhc59fr.1
title: Codes and Data for (Generalized entropy based possibilistic fuzzy C-Means for clustering noisy data and its convergence proof)

description: Dear Researcher, Thank you for using this code and datasets. I explain how GEPFCM code related to my paper "Generalized entropy based possibilistic fuzzy C-Means for clustering noisy data and its convergence proof" published in Neurocomputing, works. The main datasets mentioned in the paper together with GEPFCM code are included. If there is any question, feel free to contact me at: bas_salaraskari@yahoo.com s_askari@aut.ac.ir Regards, S. Askari
DOI: 10.5061/dryad.05j8s/1
title: SUPPLEMENTARY DATA 1

description: Terminology used to refer the prophyll in Carex s.l. in reference works, as well as another uses for the terms perigynium/utricle, listed by chronological order.
DOI: 10.5061/dryad.1n84v/1
title: All data

description: This folder contains the information related to the analyses as well as the important results and scripts.Folders are described in individual README within the subfolders.
DOI: 10.5061/dryad.1p0rm/1
title: Single nucleotide variants for C. maculatus

description: This VCF file (VCF v 4.1) contains the full set of unfiltered SNVs identified from the C. maculatus experimental flies. The following commands were used to generate this set of variants: samtools mpileup -C 50 -d 50 -f cmacbbg9jan14gbs.fasta -q 10 -Q 15 -D -g -I *bam &gt; cmacvariants.bcfbcftools view -c -d 0.8 -g -p 0.01 -P full -t 0.001 -v cmacvariants.bcf &gt; cmacvariants.vcf
DOI: 10.5061/dryad.1p0rm/10
title: C. maculatus DNA sequence alignment 2L2R

description: Compressed directory with bam format alignments
DOI: 10.5061/dryad.1p0rm/11
title: C. maculatus DNA sequence alignment 3L3R

description: Compressed directory with bam format alignments
DOI: 10.5061/dryad.1p0rm/12
title: C. maculatus DNA sequence alignment M

description: Compressed directory with bam format alignments
DOI: 10.5061/dryad.1p0rm/2
title: Reference genome sequence

description: An original reference genome sequence was downloaded from http://www.beanbeetles.org/genome/denovo/new/longContigs.fasta. We then added GBS consensus sequences that did not match this reference as additional contigs. This file includes the original reference plus these additional contig sequences.
DOI: 10.5061/dryad.1p0rm/3
title: C. maculatus allele frequencies

description: This compressed directory contains csv text files with allele frequency estimates for each line and generation (one file each). Within each file, rows correspond with different SNVs and the values on each row give the posterior mean, median, and lower and upper bounds of the 95% CIs for the frequency of one of the two alleles at the locus.
DOI: 10.5061/dryad.1p0rm/5
title: Source code for ABC model

description: This compressed directory contains the source code for the ABC program used to infer selection coefficients. The directory includes example data files and a README file with compilation instructions.
DOI: 10.5061/dryad.1p0rm/6
title: Source code for Ne estimation program

description: This compressed directory contains the source code for the program used to infer contemporary effective population sizes and implement the Bayesian bootstrap analyses.
DOI: 10.5061/dryad.1p0rm/7
title: C. maculatus survival data

description: This csv file contains the data from the survival assays. The files has five columns: line, reverted or non-reverted line (trt), generation (gen), the number of surviving beetles (surv), and the number of dead beetles (dead).
DOI: 10.5061/dryad.1p0rm/9
title: C. maculatus DNA sequence alignment L1LR

description: Compressed directory with bam format alignments
DOI: 10.5061/dryad.30hg1/1
title: Biomimetics_Temperatures_Fig1

description: Pisaster ochraceus and Mytilus californianus biomimetic temperatures recorded in the mid intertidal zone at Bodega (California) and Strawberry Hill (Oregon) during summer months of 2012 (June 22nd through August 10th).  Data were collected every 30 min.
DOI: 10.5061/dryad.30hg1/2
title: Pisaster_Mytilus_SMR_Fig2

description: Standard metabolic rate (SMR) of the sea star Pisaster ochraceus and mussel Mytilus californianus collected from Bodega (California) and Strawberry Hill (Oregon).
DOI: 10.5061/dryad.30hg1/3
title: Estimated_relative_performance_Fig3

description: Aquatic and aerial thermal performance curves described for Pisaster ochraceus and Mytilus californianus from Bodega (California) and Strawberry Hill (Oregon).  We estimated the aquatic curves’ parameters using empirical SMR measurements (Pisaster_Mytilus_SMR_Fig2), and the aerial curves’ parameters using information from the literature.
DOI: 10.5061/dryad.30hg1/4
title: Calculated_relative_performance_Fig4

description: Thermal performance calculated for Mytilus californianus (prey) and Pisaster ochraceus (predator) using species- and site-specific thermal performance curves and body temperatures recorded in situ by biomimetic sensors.  The static scenarios represent individuals that remain immobile.  The mobile predator considers movements between microhabitats, as informed by regular surveys of microhabitat use.  The optimal scenario represents the hypothetical situation where Pisaster occupies the microhabitat that reports the highest performance.
DOI: 10.5061/dryad.30hg1/5
title: Body_mass_index_Fig.5

description: Body mass indices (BMI) of Pisaster ochraceus and Mytilus californianus individuals collected at Bodega (California) and Strawberry Hill (Oregon) during the summer of 2012.
DOI: 10.5061/dryad.3cp54/2
title: 20160827mfERG
DOI: 10.5061/dryad.3cp54/3
title: 20160827OCT
DOI: 10.5061/dryad.3g7n2/1
title: Uptake of DON by a vertebrate by Katayama et al
DOI: 10.5061/dryad.60ff8/8
title: Data S8

description: Male killing efficiency of Arsenophonus nasonaie strain UK1 in multiple host wasp species.
DOI: 10.5061/dryad.60ff8/9
title: Data S9

description: Superparasitism intensity of Nasonia vitripennis at varying wasp and host densities.
DOI: 10.5061/dryad.6fv96.2
title: Data from: Does personality affect the ability of individuals to track and respond to changing conditions?
DOI: 10.5061/dryad.6fv96.2/1.2
title: Data used for the stepwise regression analyses
DOI: 10.5061/dryad.6fv96.2/2.2
title: Data used for the linear mixed effects analyses
DOI: 10.5061/dryad.d3t53/1
title: Data.for.RSOS
DOI: 10.5061/dryad.g16gv/1
title: Manica et al BE 2016_DryadSubmission

description: This data file describes motor and acoustic display parameters and body mass index of male blue-black grassquits (Volatinia jacarina).
DOI: 10.5061/dryad.g71c0/1
title: Alfalfa chemistry data

description: Phytochemical data for alfalfa (Medicago sativa) samples. This csv file includes sample meta-data, and chemical measurements for 49 anonymous chemicals.
DOI: 10.5061/dryad.g71c0/2
title: Alfalfa protein data

description: Protein data for alfalfa (Medicago sativa) samples. This csv file includes sample meta-data and protein absorbency measurements.
DOI: 10.5061/dryad.g71c0/3
title: Larval performance data

description: Lycaeides melissa larval performance data. This spreadsheet includes plant population, survival and mass data for individual caterpillars reared on alfalfa from different sites.
DOI: 10.5061/dryad.g71c0/4
title: Oviposition preference data

description: This compressed directory gives the oviposition preference data in terms of the number of eggs laid on individual plants by different females. Four files are included with different butterfly (SLA vs. VUH) and alfalfa populations.
DOI: 10.5061/dryad.g71c0/5
title: Draft alfalfa genome assembly

description: FASTA file contains the draft alfalfa genome described in the paper, which is organized in scaffolds. The assembly was generated with ALLPATHS-LG. The shell script used to run the assembly is included as a ReadMe file.
DOI: 10.5061/dryad.g71c0/6
title: Alfalfa genetic data

description: Filtered genetic data for population samples of alfalfa. The file is in vcf format and was produced using GATK's UnifiedGenotyper with ploidy set to 4 (i.e., assuming tertraploids). Only variants with a mean of 2X coverage were retained in this file. IDs provide population information as described in the paper.
DOI: 10.5061/dryad.h4k6f/1
title: Kmult Phylogenetic Signal Calculations (R Workspace)

description: R workspace containing phylogeny-specific trait datasets (body, caudal fin, dorsal fin, anal fin) and pruned trees corresponding to each dataset.
DOI: 10.5061/dryad.h4k6f/2
title: Kmult Phylogenetic Signal Calculations (R Code)

description: R code corresponding to Kmult phylogenetic signal analyses on trait data given in the R workspace.
DOI: 10.5061/dryad.h4k6f/3
title: Phylogenetic PCA analyses (R workspace)

description: R workspace containing phylogeny-specific datasets and pruned trees for each dataset in order to calculate phylogenetic principle components analysis
DOI: 10.5061/dryad.h4k6f/4
title: Phylogenetic PCA analyses (R code)

description: R code to conduct phylogenetic PCA analyses on the data in the R workspace
DOI: 10.5061/dryad.h4k6f/5
title: PCA Analyses (R workspace)

description: Size corrected morphological data for principle component analysis of body, caudal, dorsal, and anal fin shape.
DOI: 10.5061/dryad.h4k6f/6
title: PCA Analyses (R code)

description: Code to perform principle component analyses on the corresponding R dataset
DOI: 10.5061/dryad.hj278/10
title: bombyx_annotation_5152_OGs.txt

description: Shows the correspondence between our gene numbers (left column), arbitrarily assigned during construction of our moth+min-one-butterfly database, and the Bombyx gene numbers in Ensemble/SilkD. Gene ontologies from SilkDB are included when they are available. This file is duplicated in the folder  'lep_ensembl_bombyx_plus_min_one_butterfly_lowsimremoved_plus_plutella_manduca_HaMStR_database'.
DOI: 10.5061/dryad.hj278/12
title: ABySS_assemblies_unfiltered

description: Complete raw ABySS assemblies (a subset of taxa only)
DOI: 10.5061/dryad.hj278/5
title: lep_non_ditrysia_28_taxa_2212_OGs_consensus_cols_removed_nt123

description: Data matrix in fasta format for all-nucleotides (nt123) analyis.
DOI: 10.5061/dryad.hj278/6
title: lep_non_ditrysia_28_taxa_2212_OGs_consensus_cols_removed_nt123

description: Data matrix  in Phylip format for all-nucleotides (nt123) analysis.
DOI: 10.5061/dryad.hj278/7
title: raxml_partition_by_codon_position

description: Raxml code for partitioning by codon position.
DOI: 10.5061/dryad.hj278/8
title: lep_ensembl_bombyx_plus_min_one_butterfly_lowsimremoved_plus_plutella_manduca_HaMStR_database

description: The 5,152-gene moth+min-one-butterfly database, together with gene identifiers, available annotations, and profile hidden Markov models for use in ortholog search
DOI: 10.5061/dryad.hj278/9
title: post_PTP_consensus_cds_alignments_28_taxa_2212

description: The individual alignments for each of the 2,212 genes which survived the PTP paralog screen and are represented in at least 21 taxa.
DOI: 10.5061/dryad.mq2jr/1
title: SI_2

description: Concentrations are ng/g wristband. Compounds below the detection limit were assigned a value equal to 1/2 detection limit. Compounds between detection and quantitation limits were assigned a value of 1/2 quantitation limit. Gender and age data are removed to maintain participant anonymity.
DOI: 10.5061/dryad.p1bd1/1
title: Captive Bat Data

description: This file contains natural history and disease data for live bats used in our captive treatment trial.
DOI: 10.5061/dryad.p1bd1/2
title: iButton Data

description: This file contains skin temperature (celsius) data downloaded from iButtons attached to captive bats in our experiment.
DOI: 10.5061/dryad.pk78j.1
title: Data from: Shifting agriculture supports more tropical forest birds than oil palm or teak plantations in Mizoram, northeast India
DOI: 10.5061/dryad.pk78j.2
title: Data from: Shifting agriculture supports more tropical forest birds than oil palm or teak plantations in Mizoram, northeast India
DOI: 10.5061/dryad.pk78j.2/1.2
title: Bird and vegetation data from Dampa landscape, Mizoram (from Mandal and Raman 2016)

description: Please see ReadMe.txt file in the ZIP folder for more details. This dataset is from:Mandal, J. and Raman, T. R. S. 2016. Shifting agriculture supports more tropical forest birds than oil palm or teak plantations in Mizoram, northeast India. The Condor: Ornithological Applications 18: 345–359.URL: http://www.bioone.org/doi/abs/10.1650/CONDOR-15-163.1
DOI: 10.5061/dryad.qn5q7/1
title: Divergence of gastropod life history

description: Data from a common garden experiment conducted on Radix balthica sampled from thermal environments on Iceland.
DOI: 10.5061/dryad.s5s7r/1
title: Epistasis and selection response code 19.9.16

description: This Mathematica notebook contains the code used to generate figures in the MS.  It can be read using a free reader from Wolfram.com, but to execute the code requires running the Mathematica package.
DOI: 10.5061/dryad.1p0rm/13
title: C. maculatus DNA sequence data parsed_gomp003_combined

description: DNA sequence (GBS) data used in this study. Header lines include individual beetle IDs.
DOI: 10.5061/dryad.1p0rm/14
title: C. maculatus DNA sequence data parsed_gomp004_NoIndex_L006_R1_001

description: DNA sequence (GBS) data used in this study. Header lines include individual beetle IDs.
DOI: 10.5061/dryad.1p0rm/15
title: C. maculatus DNA sequence data parsed_gomp005_NoIndex_L007_R1_001

description: DNA sequence (GBS) data used in this study. Header lines include individual beetle IDs.
DOI: 10.5061/dryad.30hg1/6
title: Hsp_temperature_Lab_Fig.6

description: Total heat shock protein 70kDa (Hsp70) expression (i.e. constitutive and inducible isoforms are not differentiated) measured from Pisaster ochraceus tube feet and Mytilus californianus gill tissues.  Tissues were sampled after individuals had been kept at one of six seawater temperature treatments (10, 13, 18, 21, 24, and 27˚C) for 4d.
DOI: 10.5061/dryad.30hg1/7
title: Hsp_date_Field_Fig.6

description: Total heat shock protein 70kDa (Hsp70) expression (i.e. constitutive and inducible isoforms are not differentiated) measured from Pisaster ochraceus tube feet and Mytilus californianus gill tissues.  Tissues were collected in the field at low tide and immediately frozen in dry ice.