cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qga4as
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-87.8757765999999947 41.8524724000000035, -87.8757765999999947 41.8534179800000032, -87.8757765999999947 41.8541410600000034, -87.8757765999999947 41.8551422600000009, -87.8757765999999947 41.8563659499999972, -87.8757765999999947 41.8572002800000007, -87.8757765999999947 41.8584239699999969, -87.8757765999999947 41.8597589000000028, -87.8744440699999956 41.8597589000000028, -87.8736112400000025 41.8597589000000028, -87.8725007999999974 41.8597589000000028, -87.8715569299999970 41.8597589000000028, -87.8702243999999979 41.8597589000000028, -87.8702243999999979 41.8584239699999969, -87.8702243999999979 41.8570890399999982, -87.8702243999999979 41.8559209699999997, -87.8702243999999979 41.8551422600000009, -87.8702243999999979 41.8544747999999984, -87.8702243999999979 41.8533067299999999, -87.8702243999999979 41.8524724000000035, -87.8717790200000053 41.8524724000000035, -87.8730005000000034 41.8524724000000035, -87.8739999000000012 41.8524724000000035, -87.8749437700000016 41.8524724000000035, -87.8757765999999947 41.8524724000000035))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096358-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3x3anb
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Aeshna viridis Eversmann, 1836",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is Ukraine"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134575-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrrgq4
title: Occurrence Download

description: A dataset containing 3281 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Albania",
 "DatasetKey is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 3281 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088537-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76cu5s
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Ipomoea urbinei House"
 ]
}

 The dataset includes 17 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0331323-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f2cvh
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Macroinvertebrate groups found on deep-sea volcanic habitats in the Galapagos Marine Reserve in the Eastern Tropical Pacific Ocean: Arthropoda"
 ]
}

 The dataset includes 49 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118740-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xq3j2h
title: Occurrence Download

description: A dataset containing 463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Ipomoea tiliacea (Willd.) Choisy"
 ]
}

 The dataset includes 463 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0331320-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yd4xsw
title: Occurrence Download

description: A dataset containing 8707039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chlorophanes spiza (Linnaeus, 1758), Chlorophonia flavirostris P.L.Sclater, 1861, Chlorophonia occipitalis (Du Bus de Gisignies, 1847), Chloropicus elliotii, Chloropicus fuscescens, Chloropicus goertae, Chloropicus griseocephalus, Chloropicus pyrrhogaster (Malherbe, 1845), Xenopipo unicolor (Taczanowski, 1884), Chloropsis aurifrons (Temminck, 1829), Chloropsis cochinchinensis (Gmelin, 1789), Chloropsis hardwickii Jardine & Selby, 1830, Chlorornis riefferii (Boissonneau, 1840), Chlorospingus canigularis (Lafresnaye, 1848), Chlorospingus flavigularis (P.L.Sclater, 1852), Chlorospingus flavopectus (Lafresnaye, 1840), Chlorospingus inornatus (Nelson, 1912), Chlorospingus parvirostris Chapman, 1901, Chlorospingus pileatus Salvin, 1865, Chlorospingus semifuscus P.L.Sclater & Salvin, 1873, Chlorospingus tacarcunae Griscom, 1924, Chlorostilbon lucidus (Shaw, 1812), Chlorostilbon mellisugus (Linnaeus, 1758), Chlorostilbon poortmani (Bourcier, 1843), Chlorothraupis carmioli (Lawrence, 1868), Chlorothraupis olivacea (Cassin, 1860), Chlorothraupis stolzmanni (von Berlepsch & Taczanowski, 1884), Chondestes grammacus (Say, 1822), Chondrohierax uncinatus (Temminck, 1822), Chordeiles acutipennis (Hermann, 1783), Chordeiles minor (J.R.Forster, 1771), Chordeiles nacunda (Vieillot, 1817), Chordeiles pusillus Gould, 1861, Chordeiles rupestris (von Spix, 1825), Chroicocephalus brunnicephalus (Jerdon, 1840), Chroicocephalus bulleri (F.W.Hutton, 1871), Chroicocephalus cirrocephalus (Vieillot, 1818), Chroicocephalus genei (Brème, 1839), Chroicocephalus hartlaubii (Bruch, 1855), Chroicocephalus maculipennis (M.H.K.Lichtenstein, 1823), Chroicocephalus novaehollandiae (Stephens, 1826), Chroicocephalus philadelphia (Ord, 1815), Chroicocephalus ridibundus (Linnaeus, 1766), Chroicocephalus serranus (Tschudi, 1844), Chrysococcyx basalis (Horsfield, 1821), Chrysococcyx caprius (Boddaert, 1783), Chrysococcyx cupreus (Shaw, 1792), Chrysococcyx flavigularis Shelley, 1880, Chrysococcyx klaas (Stephens, 1815), Chrysococcyx lucidus (Gmelin, 1788), Chrysococcyx maculatus (Gmelin, 1788), Rhamphomantis megarhynchus (G.R.Gray, 1858), Chrysococcyx meyeri Salvadori, 1874, Chrysococcyx minutillus Gould, 1859, Chrysococcyx osculans (Gould, 1847), Chrysococcyx xanthorhynchus (Horsfield, 1821), Chrysocolaptes lucidus (Scopoli, 1786), Chrysolampis mosquitus (Linnaeus, 1758), Chrysolophus amherstiae (Leadbeater, 1829), Chrysolophus pictus (Linnaeus, 1758))",
 "HasCoordinate is one of (true)"
 ]
}

 The dataset includes 8707039 records from 1696 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183062-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.synp5t
title: Occurrence Download

description: A dataset containing 5623700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "Year 1989-2022"
 ]
}

 The dataset includes 5623700 records from 971 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0399075-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpbcf9
title: Occurrence Download

description: A dataset containing 615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Penstemon parryi A.Gray",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 615 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058354-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25403/upresearchdata.25913131
title: Offline adaptive radiotherapy for hypofractionated prostate therapy

description: The study was conducted retrospectively at the Radiation Oncology, Steve Biko Academic Hospital. Data from 30 patients who underwent localised prostate cancer treatment were analysed, with a primary focus on the CBCT images obtained after applying treatment couch shifts to verify the treatment setup. These CBCT images were used to create new plans, which were then compared to reference plans based on the initial CT images. The 3-dimensional couch shift coordinates were evaluated against different absorbed dose constraints on the Planning Target Volume (PTV), specifically D2% (maximum absorbed dose) and D99%≥57 Gy (minimum absorbed dose). After applying couch shifts, the average results showed no significant difference between the planned and treated absorbed doses for D98% (F = 1.570, p = 0.201 &gt; 0.05) and D2% (F = 1.841, p = 0.135 &gt; 0.05). However, linear regression analysis revealed that inferior couch shifts significantly predicted D98% during treatment, while superior (SUP) couch shifts significantly predicted D2% during treatment. Notably, each unit of superior couch shift led to a 1.797 Gy decrease in D2% during treatment (t = -3.036, p &lt; 0.05), with a negative beta value (β = -1.797). Despite these findings, the overall dose to the PTV did not significantly differ from the planning objectives. The differences in mean shifts and dosimetric plans/re-plans were compared using the ANOVA analysis.
DOI: 10.25403/upresearchdata.25913131.v1
title: Offline adaptive radiotherapy for hypofractionated prostate therapy

description: The study was conducted retrospectively at the Radiation Oncology, Steve Biko Academic Hospital. Data from 30 patients who underwent localised prostate cancer treatment were analysed, with a primary focus on the CBCT images obtained after applying treatment couch shifts to verify the treatment setup. These CBCT images were used to create new plans, which were then compared to reference plans based on the initial CT images. The 3-dimensional couch shift coordinates were evaluated against different absorbed dose constraints on the Planning Target Volume (PTV), specifically D2% (maximum absorbed dose) and D99%≥57 Gy (minimum absorbed dose). After applying couch shifts, the average results showed no significant difference between the planned and treated absorbed doses for D98% (F = 1.570, p = 0.201 &gt; 0.05) and D2% (F = 1.841, p = 0.135 &gt; 0.05). However, linear regression analysis revealed that inferior couch shifts significantly predicted D98% during treatment, while superior (SUP) couch shifts significantly predicted D2% during treatment. Notably, each unit of superior couch shift led to a 1.797 Gy decrease in D2% during treatment (t = -3.036, p &lt; 0.05), with a negative beta value (β = -1.797). Despite these findings, the overall dose to the PTV did not significantly differ from the planning objectives. The differences in mean shifts and dosimetric plans/re-plans were compared using the ANOVA analysis.
DOI: 10.15468/dl.fzqkua
title: Occurrence Download

description: A dataset containing 15872284 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Portugal"
 ]
}

 The dataset includes 15872284 records from 1624 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061480-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f4yzaa
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagittaria latifolia",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006735-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48373/fae2-r561
title: Environmental Research Infrastructures Thesaurus
DOI: 10.5281/zenodo.17014279
title: Data for Kabaria et al "Programmable Promoter Editing for Precise Control of Transgene Expression"
title: Flow cytometry, western blots, gels, DNA sequences

description: This deposit contains the raw data, analyzed data, and plasmid sequences for Kabaria et al "Programmable Promoter Editing for Precise Control of Transgene Expression." Additional information may be requested from the contact person. 



'adam_attune.zip`,`Brittany_attune.zip`, `Emma.zip`, `Mary_1.zip`, `Mary_2.zip`, `Sneha_1.zip`,`Sneha_2.zip`, `Sneha_3.zip`, and `Yunbeen.zip` contain single cell flow cytometry data. Unzip and move to a new folder `attune_data` for use with the github repository described below. Some zips have been split into multiple for upload as indicated by underscore numbers. Combine these into the same folder in 'attune_data'. For example, all files in Mary_1 and Mary_2 should be put into a folder called Mary inside the 'attune_data' folder. 

`flow_summary_statistics FINAL.zip` contains the analyzed flow cytometry data for key experiments needed to generate the figures in the paper and perform statistics. These files or additional data can also be exported from the github below using the attune_data. Github code also contains the p-values from statistical tests. 

`Supplementary Data Sequences.xlsx` and `plasmid_gb.zip` contain plasmid sequences for this paper, as well as the sequences for variants of the DIAL and TET-DIAL promoters

`unedited_gels_blots.zip` contains images of unedited blots and gels in the supplementary information of the research article. 


The code used to generate the figures from the data and modeling results can be found at https://github.com/GallowayLabMIT/Kabaria_Promoter_Editing_DIAL. The figure notebooks in this repository connect plate maps in .yaml files to folders with data in .csv files.
DOI: 10.5281/zenodo.17014280
title: Data for Kabaria et al "Programmable Promoter Editing for Precise Control of Transgene Expression"
title: Flow cytometry, western blots, gels, DNA sequences

description: This deposit contains the raw data, analyzed data, and plasmid sequences for Kabaria et al "Programmable Promoter Editing for Precise Control of Transgene Expression." Additional information may be requested from the contact person. 



'adam_attune.zip`,`Brittany_attune.zip`, `Emma.zip`, `Mary_1.zip`, `Mary_2.zip`, `Sneha_1.zip`,`Sneha_2.zip`, `Sneha_3.zip`, and `Yunbeen.zip` contain single cell flow cytometry data. Unzip and move to a new folder `attune_data` for use with the github repository described below. Some zips have been split into multiple for upload as indicated by underscore numbers. Combine these into the same folder in 'attune_data'. For example, all files in Mary_1 and Mary_2 should be put into a folder called Mary inside the 'attune_data' folder. 

`flow_summary_statistics FINAL.zip` contains the analyzed flow cytometry data for key experiments needed to generate the figures in the paper and perform statistics. These files or additional data can also be exported from the github below using the attune_data. Github code also contains the p-values from statistical tests. 

`Supplementary Data Sequences.xlsx` and `plasmid_gb.zip` contain plasmid sequences for this paper, as well as the sequences for variants of the DIAL and TET-DIAL promoters

`unedited_gels_blots.zip` contains images of unedited blots and gels in the supplementary information of the research article. 


The code used to generate the figures from the data and modeling results can be found at https://github.com/GallowayLabMIT/Kabaria_Promoter_Editing_DIAL. The figure notebooks in this repository connect plate maps in .yaml files to folders with data in .csv files.
DOI: 10.15468/dl.pt5qu2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trichomycterus steindachneri)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006736-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30137596.v2
title: Clean Water Delivered Reliably by Skilled Haulers in Taber by Superior Water Hauling & Septic

description: Superior Water Hauling & Septic is the go-to provider for reliable and safe deliveries of a crucial resource. Their team of skilled haulers makes sure every home, farm, and worksite in Taber gets a consistent supply right on time. By focusing on careful handling and punctual service, they ensure their clients can depend on their needs being met, keeping everything running smoothly without a hitch.
DOI: 10.5281/zenodo.17131831
title: Survey Results from "Computational Fact-Checking of Online Discourse: Scoring Scientific Accuracy in Climate Change Related News Articles"

description: Abstract

The quantity of information is increasing exponentially, and there is a vast amount of content viewed on the internet that lacks an indicator as to whether it is scientifically accurate and correct or scientifically inaccurate and incorrect. This thesis proposes the development of an indicator of scientific accuracy in online media. This should help in public debates and help in the detection of misinformation. The thesis presents a baseline score and clear interfaces for further improvement. The necessity for such a score has been validated by a user survey, and the employed methodologies were evaluated and updated through interviews with experts from the ORKG team. Furthermore, an overview of the knowledge required to conduct research in this field and a discussion for future work is provided.

Data Records

The data was collected in an online user survey from 05.04.2024 until 15.04.2024.
DOI: 10.5281/zenodo.17131832
title: Survey Results from "Computational Fact-Checking of Online Discourse: Scoring Scientific Accuracy in Climate Change Related News Articles"

description: Abstract

The quantity of information is increasing exponentially, and there is a vast amount of content viewed on the internet that lacks an indicator as to whether it is scientifically accurate and correct or scientifically inaccurate and incorrect. This thesis proposes the development of an indicator of scientific accuracy in online media. This should help in public debates and help in the detection of misinformation. The thesis presents a baseline score and clear interfaces for further improvement. The necessity for such a score has been validated by a user survey, and the employed methodologies were evaluated and updated through interviews with experts from the ORKG team. Furthermore, an overview of the knowledge required to conduct research in this field and a discussion for future work is provided.

Data Records

The data was collected in an online user survey from 05.04.2024 until 15.04.2024.
DOI: 10.15468/dl.9t9nfm
title: Occurrence Download

description: A dataset containing 6370 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-77.54101 -49.60047,-73.47036 -59.47556,-53.64481 -57.21409,-53.41866 -45.60521,-77.54101 -49.60047))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanodera melanodera",
 "Year 1970-2025"
 ]
}

 The dataset includes 6370 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006738-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d96pbg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Prionodon linsang)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006739-250914085247600/datasets/export for details.
DOI: 10.15468/dl.2yugfb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sagittaria latifolia",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006740-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9298p
title: Occurrence Download

description: A dataset containing 9866338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Ericaceae, Restionaceae, Proteaceae)"
 ]
}

 The dataset includes 9866338 records from 4530 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006693-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v4amcw
title: Occurrence Download

description: A dataset containing 139870 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Elevation 600-2300m",
 "Country is one of (Colombia)",
 "StateProvince is one of (caldas, risaralda, quindío)"
 ]
 }
 ]
}

 The dataset includes 139870 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004618-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtwxrn
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acmispon denticulatus (Drew) D.D.Sokoloff",
 "HasCoordinate is true"
 ]
}

 The dataset includes 265 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070018-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.