cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kh035/1
title: Power and Holman - Dryad data

description: Each row describes one observation of one of the lines. The lines were assayed repeatedly, and rows with the same value of "Line ID" are observations of the same line. The columns describe the mating and food treatment of the focal line, and give the response variables we measured (total offspring number and mass, egg-to-adult survivorship data, and sex ratio data).
DOI: 10.5061/dryad.kh466/4
title: STRUCTURE input file

description: Input file for STRUCTURE analysis
DOI: 10.5061/dryad.mp2p2/1
title: Sexual selection is influenced by both developmental and adult environments - data

description: Data used in generalized linear models and selection analyses
DOI: 10.5061/dryad.mq7n0/1
title: Rodent DRB Alleles from Asia

description: Dataset of MHC class II DRB exon 2 allele sequences from rodents sampling in Thailand, Laos and Cambodia. The name of alleles include the species ID:  Bain for Bandicota indica ; Basa for Bandicota savilei ; Bebe for Berylmys berdmorei ; Bebo for Berylmys bowersi ; Leed for Leopoldamys edwardsi ;Muca for Mus caroli ; Muce for Mus cervicolor ; Muco for Mus cookii ; Raex for Rattus exulans ; Rasa for Rattus sakaratensis ; Rata for Rattus tanezumi ; RaR3 for Rattus tanezumi mitochondrial lineage R3
DOI: 10.5061/dryad.n4k6p/1
title: Data used in Sick et al 2014
DOI: 10.5061/dryad.p8740/1
title: Exploratory personality and the propensity for tail autotomy in the brown anole lizards

description: Distribution of Anolis sagrei individuals along two measurementsof boldness during the first (a and c) and second personalitytrials (b and d).
DOI: 10.5061/dryad.pk27h/1
title: Smith-Patten_Patten_data

description: Presence/absence data for each taxon used in the study.
DOI: 10.5061/dryad.pk27h/2
title: Smith-Patten_Patten_calculator_matrices

description: Calculator used for pairwise Jaccard’s dissimilarity indices; resulting matrices for all taxa
DOI: 10.5061/dryad.pk27h/3
title: Smith-Patten_Patten_BARRIER_output

description: Raw BARRIER 2.2 output for all taxa
DOI: 10.5061/dryad.pk27h/4
title: Smith-Patten_Patten_C_Program

description: C program to create bootstrap matrices
DOI: 10.5061/dryad.qh1pg/5
title: DEAP Validation 2: Expression Data Part 2

description: All simulated expression data used for the section "DEAP Validation 2: Simulated Data on Biological Pathways". Data is in the TSV format used for input into the DEAP algorithm. Simulated data was generated as described in "Methods: Simulated Data". File naming indicates the variables input into the simulation algorithm.
DOI: 10.5061/dryad.r6209/3
title: 971_PinosAltos_fitness

description: Inbreeding depression and seed data for the population from Pinos Altos
DOI: 10.5061/dryad.r6209/4
title: reoutcrossingfiles

description: Files for analyses in MLTET  - mating system analyses of tetraploids.
DOI: 10.5061/dryad.rm098/1
title: Onyango_T_MaleBaboons_Hormones&Behavior2013

description: Data Excel file containing two data sets: 1). Residuals of log-transformed testosterone values after controlling, in a mixed effects model, for fixed effects (i.e., male age, male rank, number of immatue offspring, whether a male had an immature offspring or not, season) and random effect (i.e., male identity). 2). Spatial proximity data between baboon fathers and their offspring. These data were used to determine whether baboon fathers were in spatial proximity to their offspring (rather than to unrelated immatures) more often than expected by chance.
DOI: 10.5061/dryad.rp321/1
title: Flowering phenologies
DOI: 10.5061/dryad.rp321/2
title: Bee phenologies
DOI: 10.5061/dryad.rp321/3
title: plant-bee interactions
DOI: 10.5061/dryad.rr42f/1
title: Database_BMJ_Open_25Jul2014

description: Data spreadsheet
DOI: 10.5061/dryad.v4b63/1
title: Merila_dryad

description: Sex, age and standard length of all specimens used in the study
DOI: 10.5061/dryad.vq587/4
title: HAO_obo_file

description: Ontology OBO file version for wasps, bees and ants (Hymenoptera) used during the matching process.
DOI: 10.5061/dryad.178n3/3
title: BEAST input file used to fit the DNA sequence data onto the coral supertree topology with fossil node calibrations (Stolarski et al. 2011)
DOI: 10.5061/dryad.178n3/4
title: Phylogeny with the DNA sequence data fit onto the coral supertree topology
DOI: 10.5061/dryad.178n3/5
title: BEAST input file for randomly resolving polytomies on the strict consensus supertree generated by PolytomyResolver (Kuhn et al. 2011)
DOI: 10.5061/dryad.178n3/6
title: Supertree randomly resolved for analyses of evolutionary diversity (1000 posterior trees)
DOI: 10.5061/dryad.178n3/7
title: R code used to compute and compare evolutionary diversity metrics in each ecoregion before and after the projected extinction of threatened species
DOI: 10.5061/dryad.1tv93/1
title: Dryad_Entry_File

description: Locality and microsatellite data
DOI: 10.5061/dryad.201rm/1
title: Anopheles gambiae microsatellite data

description: This file contains the genotypes of 967 Anopheles gambiae mosquitoes for 13 microsatellite loci, analysed in the manuscript: Pinto et al. 2013. Geographic population structure of the African malaria vector Anopheles gambiae suggests a role for the forest-savannah biome transition as a barrier to gene flow. Evolutionary Applications (in press). The numbers of the first column indicate the sample, as described in Table S1 (Supporting information) of the manuscript. Table S1 also contains information on the molecular form composition of each sample. The microsatellites analysed are described in Table S2 (Supporting information). Genotypes are presented in 2-digit allele GENEPOP format.
DOI: 10.5061/dryad.2263n/1
title: Numbers of new drugs UK 1971-2011

description: Excel spreadsheet of annual numbers of new drugs launched in the UK from 1971 to 2011. Contains data in 6 columns: A: Year. B-D: Data from NIHR HSC, derived from new preparations added to the BNF from 1982-2011. Shows numbers of NCEs, new biologics and totals for each year. E: Data from CMR (1991), published by Tansey et al(1994). Shows numbers of NCEs for each year from 1971-1989. F: Combines data from columns D & E to show numbers of new drugs from 1971-2011. Years 1982-89 show the average of the two values, rounded to the nearest whole number.
DOI: 10.5061/dryad.22v18/1
title: Phylogenetic tree

description: The concatenated amino acid sequences were used to create a neighbor-joining tree using TREE-PUZZLE program with the Dayhoff model. The divergence time between species was estimated using r8s software with the Langley-Fitch medel by calibrating with the origin of the Ascomycota at 500-650 million years ago.
DOI: 10.5061/dryad.22v18/2
title: Alignments of orthologous proteins

description: Firstly, 1328 orthologous proteins were screened out among Curvualria lunata and other 11 close fungi including Bipolaris maydis, Setosphaeria turcica, Pyrenophora tritici-repentis, Phaeosphaeria nodorum, Cercospora zea-madis, Aspergillus flavus, Magnaporthe oryzae, Fusarium graminearum, Saccharomyces cerevisiae, and Ustilago maydis with a cutoff E value of 1e-20. Secondly, these orthologous proteins were aligned using Clustal W 2.1. Lastly, the aligned proteins were concatenated
DOI: 10.5061/dryad.277g0/1
title: Assembled fasta contigs from E. carcharodonta juvenile male eye sequencing

description: We extracted RNA from dissected male eyes, made cDNA and sequenced with Illumina Ultra High Throughput Sequencing.  Assembled with Trinity and iAssembler.
DOI: 10.5061/dryad.2nk5p/1
title: Phenotypic and genotypic characteristics of immigrant and resident blue tits

description: Phenotypic and genotypic characteristics of adult blue tits in relation to sex and origin (immigrant/resident)
DOI: 10.5061/dryad.33n3f/1
title: data matrix

description: data matrix in Nexus format
DOI: 10.5061/dryad.35h8v/2
title: Dubuis et al. - Raw_Profiles

description: Each file contains the source data for raw gap gene (Hb, Kr, Gt, Kni) dorsal intensity profiles measured using immunofluorescence techniques in 163 Drosophila embryos during n.c. 14. Column 1 contains the embryo number referring to its position on the slide (see Images.zip). Column 2 contains an information about the azimuthal orientation of the embryo on the slide ('1' if the confocal plane is closer to midsagittal plane, '2' if it is closer to the coronal plane). Column 3 contains the furrow canal depth (delta_FC) measured in micrometers. Column 4 contains the corresponding estimated age in minutes. Columns 5 to 1004 contain a 1x1000 vector representing the dorsal intensity profile of the gap gene (Hb, Kr, Gt, Kni) in the embryo. The 1000 points are equally spaced along the AP axis. Thus, Intensity345 represents the intensity at 34.5%EL. NaN means that we couldn't reliably detect the profile intensity at that position (usually near the edges). Columns 1-4 are identical in the four files.
DOI: 10.5061/dryad.450qq/7
title: Supplemental tree figures

description: A collection of figures showing branches on generic phylogeny for which each locus contains decisive data. This Appendix is a PDF file. View its table of contents to browse the contained figures by locus name.
DOI: 10.5061/dryad.4pf4t/1
title: creep_dinf

description: Hillslope transects obtained from the creep-dominated landscape. Obtained using the input file creep.in in the Channel Hillslope Integrated Landscape Development model (CHILD) version RI8.12 (Tucker et al. 2001), and the matlab scripts ridgeline.m, trace_down.m, and trace_up.m. See Ecological Archives for the input and matlab files.
DOI: 10.5061/dryad.4pf4t/2
title: overlandflow_dinf

description: Hillslope transects obtained from the overland flow-dominated landscape. Obtained using the input file overlandflow.in in the Channel Hillslope Integrated Landscape Development model (CHILD) version RI8.12 (Tucker et al. 2001), and the matlab scripts ridgeline.m, trace_down.m, and trace_up.m. See Ecological Archives for the input and matlab files.
DOI: 10.5061/dryad.549gj/1
title: Data for Superb fairy-wren

description: Measurements of lysozyme concentration, sperm velocity and percent motile sperm, tarsus length, body mass and cloacal protuberance volume for 19 adult male Superb fairy-wrens.
DOI: 10.5061/dryad.58d51/1
title: data_reproduction-kangaroo

description: collected in the field
DOI: 10.5061/dryad.75c77/2
title: Egg Cardenolides - Experiment 1 & 2

description: Chemical analysis of cardenolides in eggs sampled during experiment 1 & 2.
DOI: 10.5061/dryad.75c77/3
title: Cardenolides data - Experiment 3

description: Chemical analysis of cardenolides in plants, adults, and eggs sampled during experiment 3.
DOI: 10.5061/dryad.75c77/5
title: Offspring data - Experiment 2

description: All data collected from offspring in experiment 2.
DOI: 10.5061/dryad.82d4q/2
title: Printable overview of bird migration speed cases in spring and autumn

description: Printable overview of bird migration speed cases in spring and autumn, same data as in .csv file.
DOI: 10.5061/dryad.8339m/6
title: Level-6_all_countries

description: Structure data file for level-6 analyis. All available populations, including samples collected from all host plants Convolvulus arvensis; Urtica dioica; Lavandula angustifolia; Solanum tuberosum; Vitex agnus-castus
DOI: 10.5061/dryad.83qh4/1
title: environmental range raw data

description: Raw data file (.xls) containing environmental ranges of all parental strains, F1 hybrids and F2 hybrid swarms.
DOI: 10.5061/dryad.83qh4/2
title: relative fitness data

description: Raw data file (.xls) containing all data from relative fitness assays.
DOI: 10.5061/dryad.83qh4/3
title: transgression per genetic distance class

description: Raw data file (.xls) containing data on genetic crossing distance, distance category, F1 transgression, and F2 transgression per environment.
DOI: 10.5061/dryad.87754/1
title: OrdTJ_FE-2013-00093_readme

description: See read me file for details.
DOI: 10.5061/dryad.8q6n4/1
title: Blount et al Nat 2012 Expression
DOI: 10.5061/dryad.8q6n4/2
title: Blount et al Nat 2012 fig 4b raw
DOI: 10.5061/dryad.8q6n4/3
title: Blount et al Nat 2012 fig 4b transformed
DOI: 10.5061/dryad.8q6n4/4
title: Blount et al Nat 2012 fig 4c transformed
DOI: 10.5061/dryad.8q6n4/5
title: Blount et al Nat 2012 fig 5c raw
DOI: 10.5061/dryad.9p40s/1
title: Data from: Towards an evolutionary understanding of questing behaviour in the tick Ixodes ricinus

description: .csv file with the three blocks of the UK populations in increasing temperature conditions, followed by those populations at constant temperatures. Finally the French populations with increasing temperature.
DOI: 10.5061/dryad.b451g/1
title: Supplementary material, S1

description: A video showing 3D models of the chrysalis and its internal anatomy on every day it was scanned during development. The external morphology (i.e. pupal cuticle) and then internal anatomy (tracheal system, gut and air lumen) are shown for day one through a 360° rotation. Stills of day four, and seven showing internal anatomy are then followed by a rotation at day ten, a still of day thirteen, and then rotations of both day fourteen (internal) and day sixteen (external anatomy). We believe these animations demonstrate the power of 3D models when studying complex morphologies such as those of the tracheal system.
DOI: 10.5061/dryad.f1t15/1
title: sequence alignment
DOI: 10.5061/dryad.fq228/1
title: IGS and 5S sequences from Ginkgo biloba

description: Alignment of IGS and 5S sequences in FASTA format. Only the first 3 sequences contain 5S rDNA. Sequences could be only partially aligned due large deletions (Figure S6).
DOI: 10.5061/dryad.g08c7/5
title: Fst_RADs

description: In this file we present the level of genomic differentiation (Fst) as evaluated with the RADtools software for all SNPs and pairwise genomic comparisons. We provide information on the identity of the SNP, the RAD-tag where it is located and the genomic contig where this tag was mapped.
DOI: 10.5061/dryad.h4070/3
title: Saxifragales_Accession_Table

description: "Saxifragales_Accession_Table.txt" gives the GenBank id number for each sequence used in the supermatrix.
DOI: 10.5061/dryad.h4070/4
title: GeneLocationsInAlignment

description: The file "GeneLocationsInAlignment.txt" tells which genes correspond to which parts of the alignment in the supermatrix.
DOI: 10.5061/dryad.h4070/5
title: Saxifragales.table1(POLYMRPHS)

description: Saxifragales.table1(POLYMRPHS).xlsb and Saxifragales.table2.(SIMPLE)_.xlsb contain the character data used in the ancestral state reconstruction analyses.
DOI: 10.5061/dryad.h4070/6
title: Saxifragales.table2.(SIMPLE)_

description: Saxifragales.table1(POLYMRPHS).xlsb and Saxifragales.table2.(SIMPLE)_.xlsb contain the character data used in the ancestral state reconstruction analyses.
DOI: 10.5061/dryad.jd512/1
title: A genetic view of Indo-Pacific Pocillopora

description: Sample list including locations, ORF and ITS2 designations, microsatellite allelic data, and structure input files
DOI: 10.5061/dryad.jn800/1
title: SNP data

description: Excel file detailing all SNP genotyped at all (glass eel) individuals
DOI: 10.5061/dryad.k2v04/1
title: FishList

description: A list of marine fish species identified as occurring in Bootless Bay, Papua New Guinea. Species in BOLD were not observed during the January 2011 survey, but reported in the literature or in museum collections Species were identified to the finest taxonomic resolution possible.
DOI: 10.5061/dryad.mf103/1
title: Varricchio-Suppl Mat

description: Five tables on: 1) the gas conductance of an average Troodon egg from MOR 299 and 750, 2) the gas conductance of a weighted (by sample size) average Troodon egg from MOR 299 ad 750, 3) chi-square test  results for for uniform pore distributions in MOR 299 and 750, 4) chi-square test results for pore distribution comparison of Troodon eggs MOR 750 and 299, and 5) chi-square test for uniform distribution for average Troodon egg.
DOI: 10.5061/dryad.mk6g1/2
title: 2D-BoundaryLimitedRangeExpansion

description: Python script simulating the coalescence process in a boundary-limited range expansion in a continuous, strip shaped, two-dimensional habitat.
DOI: 10.5061/dryad.n5h13/1
title: COI alignment used to generate barcode tree

description: Sequence alignment of COI sequences used for identification.  This alignment was used to generate the neighbor joining tree for figure 2 of manuscript.
DOI: 10.5061/dryad.s7gm5/1
title: OakleyandWinn2010_NewPhyt_dataforDryad
DOI: 10.5061/dryad.sc6k5/1
title: Bellamy et al. file 1
DOI: 10.5061/dryad.sk64k/1
title: Ag 85A serology Dryad

description: Antibody responses of cattle to mycobacterial antigen 85A (Ag85A). Excel file from ELISA plate reader using Softmax-pro.
DOI: 10.5061/dryad.sk64k/2
title: CFP Serology Dryad

description: Antibody responses to mycobacterial culture filtrate protein. Excel file from ELISA plate reader using Softmax-pro.
DOI: 10.5061/dryad.sk64k/3
title: ESAT Serology Dryad

description: Antibody responses to ESAT6. Excel file from ELISA plate reader using Softmax-pro.
DOI: 10.5061/dryad.sk64k/4
title: Histo lesion scores 3.14 Dryad

description: Histology lesion scores. Data collected in field at post-mortem. Excel file
DOI: 10.5061/dryad.t3h6j/1
title: Purcell_Chapuisat_2014_Cross_Foster_Data

description: This file contains all data associated with the article: "Foster care-givers influence brood pathogen resistance in ants".  Please see the ReadMe file for detailed descriptions.
DOI: 10.5061/dryad.t6js1/1
title: Maximum likelihood trees and genotype table of swine influenza virus
DOI: 10.5061/dryad.tg7b1/2
title: genotypes2012

description: Genotypes of subjects used for relatedness estimates
DOI: 10.5061/dryad.084g8/1
title: CDS data set - BEAST input
DOI: 10.5061/dryad.1051d/1
title: genotype_file_MER_Geraldesetal2012.csv

description: The file genotype_file_MER_Geraldesetal2012.csv contains the genotyping data used in Geraldes et al. 2012 "A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species". The file contains genotypes for 32,683 loci in 72 accessions. These loci were genotyped with the 34K Populus SNP array described in this manuscript. Details regarding each locus and the genotyping methods can be found in the manuscript. The file contains 32,684 lines and 73 fields per line separated with commas (.csv). The first line is a header line. The first field reads "SNP" and indicates that for each line, the first field contains the name of the Single Nucleotide Polymorphism (SNP). This name has three parts separated with underscores, where the first part is always "scaffold", the second part is the linkage group to which the locus is mapped and the last part is the location (in base pairs) in that linkage group. All names refer to version 2 of the Populus trichocarpa genome available at http://www.phytozome.net/. Each following field in line one, is the name of the accession genotyped. Accession details are provided in Geraldes et al 2012. Each subsequent line has the genotypes for each individual/locus. Each genotype is followed by a "|" and a number ranging from 0 to 1. This number is the GenCall Score, a measure of the confidence in the genotytpe call. Details are in Geraldes et al. 2012. If the Gencall Score is &lt;0.15, the genotype is considered missing and is represented by "--". Other missing genotypes are indicated with #NA.
DOI: 10.5061/dryad.1tv93/2
title: Genalex Data File

description: Raw data for use in GENALEX, in GENALEX format
DOI: 10.5061/dryad.2260t/1
title: SNP array based linkage map

description: Genotypes of F2 panel clones
DOI: 10.5061/dryad.2nk5p/2
title: Genotype data

description: Genotype information from 25 microsatellite markers
DOI: 10.5061/dryad.3b78n/1
title: Short-Term Priority Data

description: Cover estimates for priority treatments
DOI: 10.5061/dryad.46181/1
title: Tognetti vegetation environmental data

description: This file contains micro-environmental and vegetation data from a 4-yr mowing and fertilization experiment in a remnant of native grassland. The data also describe pre and post (natural) burning structure of the same remnant community before being manipulated in the experiment. The experiment consisted of annual mowing and fertilization with 20 g N m-2 yr-1, in the form of ammonium nitrate. We evaluated the dynamics of various native and exotic functional groups. Species were classified into grasses (=graminoids), legumes and non-legume forbs, and were labelled as native or exotic based on local floras. For each functional group, we calculated the percentage cover and species richness (number) per plot and sampling date. Above- and below-ground resource levels were monitored in only six of the blocks on the same sampling dates as for the vegetation. Microenvironmenal variables measured were photosynthetically active radiation beneath the canopy, soil water and N content in the top soil.
DOI: 10.5061/dryad.5k414/1
title: data_ms_jeb-2012-00676

description: The data file contains all relevant data for this article. Any description of what the data is can be found in the ReadMe File.
DOI: 10.5061/dryad.5nt3g/1
title: Hyla_genotypes

description: Genotypes of parents and offspring for crosses used to infer sex linkage. File contains 6 descriptive columns plus 2 per marker, and one row per individual. Missing data value: empty cell.species: Species	cross: Collective identifier for 2 parents and their offspringindiv: Unique identifier for an individualstage: Adult, juvenile, or tadpolesex: Sex, observed or inferred from microsatellitessexed_by: Sex established by phenotype for adults, microsatellites for tadpoles, dissection for juveniles[marker name].1: One of two alleles for a given marker. For microsatellites, number corresponds to fragment length. For PCR-RFLP markers, 0 or 1 for absence/presence of restriction site. For sequence markers, balearicus or siculus haplotype.[marker name].2: Second of two alleles for the marker.
DOI: 10.5061/dryad.5nt3g/3
title: Rana_genotypes

description: Genotypes of parents and offspring for crosses used to infer sex linkage. Each file contains 6 descriptive columns plus 2 per marker, and one row per individual. Missing data value: empty cell.species: Species	cross: Collective identifier for 2 parents and their offspringindiv: Unique identifier for an individualstage: Adult, juvenile, or tadpolesex: Sex, observed or inferred from microsatellitessexed_by: Sex established by phenotype for adults, microsatellites for tadpoles, dissection for juveniles[marker name].1: One of two alleles for a given marker. For microsatellites, number corresponds to fragment length. For PCR-RFLP markers, 0 or 1 for absence/presence of restriction site. For sequence markers, balearicus or siculus haplotype.[marker name].2: Second of two alleles for the marker.
DOI: 10.5061/dryad.62s00/2
title: Input_for_STRUCTURE_analysis
DOI: 10.5061/dryad.7m6kg/66
title: Fig. 11b: HK-MF-00001 — Nectocaris ?pteryx, large morph from Chengjiang

description: Showing striated funnel infill, pervasive bioturbation in axial cavity, projections from head, relief associated with fin striations, and bars with ?shrinkage-related wrinkling
DOI: 10.5061/dryad.80d7p/3
title: ECM IB4+ t=24LN expressed genes reps1-6

description: Data showing genes detected on microarrays for IB4-expressing dorsal root ganglion neurons at t=24LN (sampled after 24 hr culture on laminin-coated substrate). See Read-me file for details. Only genes detected above background are listed; of 144 ECM genes on the arrays, only 36 genes were expressed by both neuron populations.
DOI: 10.5061/dryad.82h0m/4
title: Squamata_Models

description: Model partition file for 12-gene matrix.