cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23719/1529129
title: Assessing residential activity in a home plumbing system simulator: monitoring the occurrence and relationship of major opportunistic pathogens and phagocytic amoebas (FM)

description: The raw sequence reads have been submitted to the NCBI Sequence Read Archive (SRA) under the BioProject PRJNA961987 with the following BioSample numbers: SAMN34376234, SAMN34376235, SAMN34376236, SAMN34376237, SAMN34376238, SAMN34376239, SAMN34376240, SAMN34376241, SAMN34376242, SAMN34376243, SAMN34376244, SAMN34376245, SAMN34376246, SAMN34376247, SAMN34376248, SAMN34376249, SAMN34376250, SAMN34376251, SAMN34376252, SAMN34376253, SAMN34376254, SAMN34376255, and SAMN34376256.

An abundance matrix (Table_taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a number of reads and percentage of all reads obtained for each individual location and residential activity.

A table (Table_water_quality_parameters.xlsx) contains rows as residential activity with date sampled, columns as Temp (°C), Free Chlorine (Cl2/L), pH, L. pneumophila, M. intracellulare, P. aeruginosa, and V. vermiformis for each HPS section.
DOI: 10.23719/1529156
title: Data for Deiodinase inhibition impairs the formation of the three posterior swim bladder tissue layers during early embryonic development in zebrafish

description: The data set includes:
1) Swimbladder inflation at 120 hours post-fertilization (hpf)
2) Swimbladder surface area at 120 hpf
3) Larval body length at 120 hpf
4) Swimming activity at 120 hpf
5) Targeted whole body gene expression results for nine mRNA transcripts evaluated at 60 hpf (hb9; fgf10a; acta2; anxa5b; wnt5b; fzd2; shha; ihha; ptc1)
6) Targeted whole body gene expression results for the same nine mRNA transcripts evaluated at 120 hpf.
7) Whole body thyroid hormone concentrations measured at 48, 60, 96, and 120 hpf
8) Whole body thyroid hormone concentrations in IOP exposed embryos/larvae at 48, 60, and 120 hpf
9) Data for supplementary figures S6, S7A, S7B
10) Ratio T3 of IOP exposed embryos over control T3 levels during embryonic-juvenile development (4 replicates, Figure S9)
DOI: 10.23719/1529350
title: Lead and Arsenic X-ray absorption spectral models fit as linear combination of known standards

description: In this study, smelter contaminated soil was treated with various soil amendments (ferric sulphate [Fe2(SO4)3], triple superphosphate [TSP] and biochar) to determine their efficacy in immobilizing soil lead (Pb) and arsenic (As). 
XAS were collected on soils and mine waste materials at the Materials Research Collaborative Access Team 10-BM for As and 10-ID for Pb, Advanced Photon Source at Argonne National Laboratory. 
Arsenic XAS data collection at 10-BM was measured at the As K edge (11867 eV) using a 4-element Vortex fluorescence detector. Four layers of aluminum foil to filter out background fluorescence from iron and other elements in the samples. Three to five step scans were collected in fluorescence by Vortex detector at 45° incident to sample and down beam transmission on energy calibration standard. Energy was calibrated to set at the 1st derivative inflection point zero of sodium arsenate standard to 11874 eV. Data were then background subtracted and converted to k space for EXAFS region analysis. Data processed for EXAFS analysis were k3-weighted and all e0 set to 11870 eV for uniform k range start energy. Spline range was 0.5-12 k. 
Lead XAS data collection at 10-ID utilized a Si(111) mono to tune energy to the Pb L3-edge (13035 eV). Samples were measured in fluorescence using a Mirion-Canberra 7-element Ge detector at 45° incident to the sample. For each sample, three to five scans were collected in both transmission and fluorescence mode with a Pb foil for reference sample. Calibration was performed by assigning the first derivative inflection point of Pb foil scan to 13035 eV. 
Analysis of Pb spectra utilized LCF of the 1st derivative norm(E) from -20 to 80 eV from e0, constraints of all weights between 0 and 1 and sum of weights normalized to 1. Standards were sequentially removed based on statistical improvement of fit. Components contributing less than ten percent were removed, followed by refitting with remaining components. The combination of standards resulting in the lowest R-factor results for each sample was reported. Arsenic spectra were analyzed LCF utilizing the EXAFS range of spectra. Preliminary data checking indicated As oxidation states of all samples contained only AsV as confirmed by matching edge position with the sodium arsenate pellet used for energy calibration. As EXAFS range were utilized for quantitative speciation from a k-range of 3-10 Å-1.
DOI: 10.23719/1529412
title: Combined NRSA benthic macroinvertebrate indices and landscape data for Random Forest Analysis.

description: Combined benthic macroinvertebrate indices and landscape data used in random forest analysis. Data is from the 2008/2009 National Rivers and Streams Assessment. All data and meta data are also available on the US EPA NARS website.
DOI: 10.23719/1529420
title: Matched Sentinel-2 spectral data and chlorophyll a concentrations 2015-2020

description: The dataset includes Sentinel-2 spectral data for all bands spatiotemporally matched with available chlorophyll a concentration data from several data sources including the Water Quality Portal.
DOI: 10.23719/1529544
title: Dataset for "Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid'

description: These spreadsheets contain the underlying data, calculations, and R code for the figures of the manuscript "Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid". The first tab of every spreadsheet contains descriptions of the data (metadata). For clarifying questions regarding the data, please contact Dr. Brian Chorley (EPA-ORD) at chorley.brian@epa.gov. If you require a review token for the sequencing datasets located in the GEO links (RNAseq and RRBS), please contact Dr. Chorley.
DOI: 10.23719/1529586
title: Web-ICE v4.0 models, data, and validation

description: Web-ICE v4.0 models, data, and validation results that were used in analyses for associated manuscript. Additional data are supplied in Supplemental information that will be published online with the manuscript.
DOI: 10.23719/1529593
title: supporting data for publication

description: The xcel spreadsheet includes results of photochemical model simulations of regional haze that were used to develop the tables and figures included in the publication.
DOI: 10.23719/1529598
title: Gestational Exposure to Perchlorate in the rat: Thyroid Hormones in Fetal Thyroid Gland, Serum, and Brain

description: This dataset contains results from rodent study. Thyroid hormones and brain endpoints are reported for pregnant rat dams and progeny on gestational day 20 following drinking water exposure to the dams. Several dose levels were examined
DOI: 10.23719/1529744
title: Estimated Emissions During Polymer Extrusion Processes for Modeling Research

description: This dataset is a collection of emissions data during extrusion processes used to support regression modeling research. The data were collected from various academic publications and patents. Since the case study involving the data was for demonstrative purposes, the dataset involves some approximations to complete all data fields. Users are encouraged to visit the associated journal article and individual sources to better understand if any parts or all of the data are fit for purpose.
DOI: 10.23719/1529747
title: Impact of Co-disposal with Ash

description: Data used in the manuscript to creat the tables and figures.
DOI: 10.23719/1529750
title: Toxicity by descent: a comparative approach for chemical hazard assessment

description: Data for "John K. Colbourne, Joseph R. Shaw, Elena Sostare, Claudia Rivetti, Romain Derelle, Rosemary Barnett, Bruno Campos, Carlie LaLone, Mark R. Viant, Geoff Hodges, Toxicity by descent: A comparative approach for chemical hazard assessment, Environmental Advances, Volume 9, 2022, 100287, ISSN 2666-7657, https://doi.org/10.1016/j.envadv.2022.100287"
DOI: 10.23719/1529767
title: Modelling data for RI embayments

description: Nitrogen loading, estuarine volume and flushing data  derived from land use and hydrodynamic models and used in study
DOI: 10.23719/1529827
title: Source Code for Evaluating Impact of Anatomical and Physiological Variability on Human Equivalent Doses Using PBPK Models

description: The dataset includes source code that was used to perform analyses described in the manuscript "Evaluating Impact of Anatomical and Physiological Variability on Human Equivalent Doses Using PBPK Models" by Schacht et al.
DOI: 10.23719/1529978
title: Gonadal Development in Smallmouth Bass (Micropterus Dolomieu) Reared in the Absence and Presence of 17-α-Ethinylestradiol

description: Supporting information for "Kadlec, S.M., Blackwell, B.R., Blanksma, C.A., Johnson, R.D., Olker, J.H., Schoff, P.K. and Mount, D.R. (2022), Gonadal Development in Smallmouth Bass (Micropterus Dolomieu) Reared in the Absence and Presence of 17-α-Ethinylestradiol. Environ Toxicol Chem, 41: 1416-1428. https://doi.org/10.1002/etc.5320"
DOI: 10.23719/1530076
title: USEEIO State Models v1.0 for 2020

description: These are Excel outputs of each of the USEEIO State Models v1.0 for year 2020. They were developed using useeior v1.4.0 (https://github.com/USEPA/useeior/releases/tag/v1.4.0). See the referenced USEPA report for a full description. See the Data Dictionary for interpretation of the sheets in each Excel file.
DOI: 10.23719/1530087
title: Can Preserved Museum Specimens Be Used to Reconstruct Fish Mercury Burden and Sources through Time?

description: Supporting information for "Ryan F. Lepak, Sarah E. Janssen, Jacob M. Ogorek, Casey B. Dillman, Joel C. Hoffman, Michael T. Tate, and Peter B. McIntyre
Environmental Science & Technology Letters 2023 10 (2), 165-171
DOI: 10.1021/acs.estlett.3c00009"
DOI: 10.23719/1530100
title: Narragansett  Bay hypoxia history core metals data

description: Data and calculations for analyses of metals in sediment cores
DOI: 10.23719/1530958
title: OMG-miRNA-Biomarker for STICS

description: Excel file of miRNA data.
DOI: 10.23719/1530968
title: Microbial Emission Factors: The Foundation for a Terrestrial-Atmospheric Modeling of Bacteria Aerosolized in Wildland Fires

description: The data includes PM2.5 emission factors from prescribed forest fires at Fishlake National Forest, Utah, USA.
DOI: 10.23719/1531027
title: Systematic update to the mammalian relative potency estimate database and development of best estimate toxic equivalency factors for dioxin-like compounds

description: The following are the Supplementary data to this article:

- Multimedia component 1
- Multimedia component 2
DOI: 10.23719/1531462
title: Combining Nontargeted Analysis with Computer-Based Hazard Comparison Approaches to Support Prioritization of Unregulated Organic Contaminants in Biosolids

description: Dataset for "Matthew N. Newmeyer, Qinfan Lyu, Jon R. Sobus, Antony J. Williams, Keeve E. Nachman, and Carsten Prasse. Environmental Science & Technology 2024 58 (27), 12135-12146, DOI: 10.1021/acs.est.4c02934"
DOI: 10.23719/1531853
title: Data for decontamination of soil using steam

description: The data are for the four phases of soil column testing, and include the colony forming unit (CFU) results and the steam and temperature data.  Refer to the data dictionary for more details
DOI: 10.23719/1531873
title: WRF outputs for ALPACA 2022

description: Standard WRF output in NetCDF format.
DOI: 10.23719/1531893
title: Raw (unspeciated) MEGAN version 3.2 output from MPAS-CMAQ version 1.0. A full year on 120 km uniform mesh.

description: This file contains a full year of unspeciated MEGAN version 3.2 emissions on an unstructured 120 km uniform MPAS mesh.
DOI: 10.23719/1531942
title: Ferrate microbial disinfection raw data

description: Two excel files include 1) raw data of ferrate microbial disinfection experiments and 2) CT calculations and figures used in the journal article published.
DOI: 10.23719/1532111
title: Ozone-Lung-Path

description: Data related to Dye et al pub on ozone and lung pathology.
DOI: 10.23719/1532152
title: Emissions data from the pilot-scale combustion of perfluorocarboxylic acids

description: Emissions data from the pilot-scale combustion of  C4 and C8 perfluorocarboxylic acids.
DOI: 10.23719/1522630
title: PISCES-NO2-data-version 6.2.2021

description: This dataset contains data in lung function, blood lipid markers, blood vascular markers, coagulation markers, and heart rate variability markers in participants of a panel study named PISCES. The dataset also contains ambient air pollutant data during the study period.
DOI: 10.23719/1522908
title: Raw data set for collaborative research with Univ of Toledo on BAF full-scale study

description: The dataset includes the results of DNA concentrations, barcode 16S information for DNA sequencing, and data analysis.
DOI: 10.23719/1522991
title: Effects of deiodinase inhibition on amphibian metamorphosis

description: This dataset contains in vitro and in vivo biochemical and apical (i.e., growth/development) data pertaining to iodotyrosine deiodinase inhibition in the African clawed frog (Xenopus laevis).
DOI: 10.23719/1524316
title: National Point Source Releases to Water Totals by Industry 2017 v1.1

description: This dataset contains national 2017 point-source releases to water by North American Industry Classification System (NAICS) 2012 6-digit codes. This dataset was generated with FLOWSAv0.3.1 by calling the getFlowBySector() function and passing "TRI_DMR_national_2017" as the method name. FLOWSA is a publicly available python package that generates standardized environmental flows by industry (https://github.com/USEPA/flowsa/releases/tag/v0.3.1). The metadata text file included as a supporting document records the FLOWSA tool version and input dataset bibliographic details.
DOI: 10.23719/1524656
title: Developing multiple lines of evidence JA Dataset

description: This data set is thedata of new plant survey and soil/media analysis for journal article currently titled  "Developing multiple lines of evidence to decrease drainage to surface area ratio for effective stormwater control using bioinfiltration"
DOI: 10.23719/1524792
title: CONUS_extent

description: MERIS and OLCI satellite data with CI_cyano algorithm quantify the spatial extent of cyanobacteria.
DOI: 10.23719/1526062
title: BioProject ID PRJNA592969

description: DNA sequences--already publicly available
DOI: 10.23719/1526469
title: SciHub_PPEcompileddata.xlsx

description: Dataset for PPE Cleaning/Disinfection Coupon Study Journal Article
DOI: 10.23719/1527792
title: Post ingestion bioaccessibility of pesticides sorbed to soils and house dusts

description: post ingestion bioaccessibility data for pesticides
DOI: 10.23719/1527871
title: Data for "Thyroid Hormone Action Controls Multiple Components of Cell Junctions at the Ventricular Zone in the Newborn Rat Brain"

description: Raw data accompanying "Thyroid Hormone Action Controls Multiple Components of Cell Junctions at the Ventricular Zone in the Newborn Rat Brain"
DOI: 10.23719/1527947
title: biofilter characterization data

description: water quality and media data from aerobic groundwater biofilters
DOI: 10.23719/1527948
title: Chapel Hill and Missoula Chamber Data sets for T640 Artifact Manuscript

description: Chapel Hill, NC and Missoula, MT chamber data used in generating the manuscript titled: Summary of PM2.5 Measurement Artifacts Associated with the Teledyne T640 PM Mass Analyzer Under Controlled Chamber Experimental Conditions Using Polydisperse Ammonium Sulfate Aerosols and Biomass Smoke.
DOI: 10.23719/1528045
title: Data from dC/dN paper: "Wide variation in U.S. aboveground tree carbon responses to nitrogen deposition and a weakening response since the 1980s-90s."

description: This the dataset shows the plot-level contributions to dC/dN from Figure 2 in the paper.  The data is in file "SN_gs_dCdN01_state_means_expanded_limited_map_v1_plt_hist_2018MAR06_VIFN3_2021-10-06" and the metadata is in file "SN_gs_dCdN01_state_means_expanded_limited_map_v1_plt_hist_2018MAR06_VIFN3_2021-10-06_column key." The data show, for all the FIA plots used in the analysis, the net dC/dN (the net change in aboveground live tree carbon with change in N deposition) based on both growth and/or survival equations multiplied by the TPH (trees per hectare). Various other identifying pieces of information are also provided (e.g., State, Ecoregion, etc.).
DOI: 10.23719/1528115
title: EPA 2018-2019 National Rivers and Streams Assessment Diatom Diversity and Phosphorus Study

description: Raw data associated with EPA 2018-2019 National Rivers and Streams Assessment Diatom Diversity and Phosphorus Study
DOI: 10.23719/1528138
title: Dataset Correction and Accuracy of PurpleAir PM2.5 Measurements for Extreme Wildfire Smoke

description: This dataset provides the dataset used in the paper "Correction and Accuracy of PurpleAir PM2.5 Measurements for Extreme Wildfire Smoke".
DOI: 10.23719/1528143
title: Seasonal analysis data

description: This data set contains seasonal number for fecal coliform, E. coli, and enterococci
DOI: 10.23719/1528146
title: National seagrass

description: Using WorldView-2 and WorldView-3 imagery to classify seagrass in coastal ecosystems.
DOI: 10.23719/1528148
title: MG1_dataset

description: Genome sequence, PCR clone sequences and qPCR data
DOI: 10.23719/1528341
title: Combining in vitro and in silico New Approach Methods to investigate type 3 iodothyronine deiodinase chemical inhibition across species

description: Dataset for "Combining in vitro and in silico New Approach Methods to investigate type 3 iodothyronine deiodinase chemical inhibition across species"
DOI: 10.23719/1528376
title: Estimating provisional margins of exposure for data-poor chemicals using high-throughput computational methods

description: Dataset for "Nicolas Chantel I., Linakis Matthew W., Minto Melyssa S., Mansouri Kamel, Clewell Rebecca A., Yoon Miyoung, Wambaugh John F., Patlewicz Grace, McMullen Patrick D., Andersen Melvin E., Clewell III Harvey J, Estimating provisional margins of exposure for data-poor chemicals using high-throughput computational methods, Frontiers in Pharmacology, 13, 2022, https://www.frontiersin.org/articles/10.3389/fphar.2022.980747,10.3389/fphar.2022.980747"
DOI: 10.23719/1528380
title: Curation of a list of chemicals in biosolids from EPA National Sewage Sludge Surveys & Biennial Review Reports

description: Data for "Richman, T., Arnold, E. & Williams, A.J. Curation of a list of chemicals in biosolids from EPA National Sewage Sludge Surveys & Biennial Review Reports. Sci Data 9, 180 (2022). https://doi.org/10.1038/s41597-022-01267-9"
DOI: 10.23719/1528498
title: stream-intermittency-visualization-dashboard-GP_P1-3

description: continuous streamflow duration, water temperature, and precipitation data collected for the development of the beta streamflow duration assessment method for the Great Plains.
DOI: 10.23719/1528502
title: Ozone responsive gene expression as a model for describing repeat exposure response trajectories and inter-individual toxicodynamic variability in vitro

description: Dataset for manuscript titled, "Ozone responsive gene expression as a model for describing repeat exposure response trajectories and inter-individual toxicodynamic variability in vitro" published in Toxicological Sciences (2022), 185(1): 38-49.  Metadata are in the Readme tab within the data file.
DOI: 10.23719/1528544
title: Rising temperatures of global freshwaters

description: Rising Temperatures of Global Freshwaters
DOI: 10.23719/1528579
title: Variability in the Inorganic composition of 3D printer filaments

description: The data provided in the spreadsheet was used to generate Figures 1, 2 and 3 in the manuscript Variability in the inorganic composition of colored acrylonitrile–butadiene–styrene and polylactic acid filaments used in 3D printing: https://doi.org/10.1007/s42452-022-05221-7
DOI: 10.23719/1528682
title: Dataset for Method Development for Thermal Desorption-Gas Chromatography-Tandem Mass Spectrometry (TD-GC-MS/MS) Analysis of Trace Level Fluorotelomer Alcohols Emitted from Consumer Products

description: The data presented in this data file is a product of a journal publication. The dataset contains FTOH concentrations detected in standards and consumer products and their emissions concentrations from consumer products.
DOI: 10.23719/1528766
title: Dynamically Downscaled Projections of Phenological Changes across the Contiguous United States 

description: This study examines how phenological indicators, which track the life cycles of plants and animals, could change from 2025–2100 as simulated in a regional climate model over the contiguous U.S.  Chilling units quantify the presence of cooler weather that can benefit plants prior to their growing season.  They are projected to decrease in the southern U.S., possibly inhibiting agricultural production.  Spring onset is projected to occur earlier in the year, advancing by 1–4 days on average over each future decade.  Risk of false springs (damaging hard freezes after spring onset) increases in the western U.S.  Our findings highlight the need to understand effects of climate change during transitional seasons, which can impact agriculture and ecosystems.
DOI: 10.23719/1528798
title: Evaluating the utility of a high throughput thiol-containing fluorescent probe to screen for reactivity: A case study with the Tox21 library

description: Code repository, data files, and supplementary information for "Grace Patlewicz, Katie Paul-Friedman, Keith Houck, Li Zhang, Ruili Huang, Menghang Xia, Jason Brown, Steven O. Simmons, Evaluating the utility of a high throughput thiol-containing fluorescent probe to screen for reactivity: A case study with the Tox21 library, Computational Toxicology, Volume 26, 2023, 100271, ISSN 2468-1113, https://doi.org/10.1016/j.comtox.2023.100271."
DOI: 10.23719/1529095
title: Strong Base Anion Exchange Selectivity of Nine Perfluoroalkyl Chemicals Relevant to Drinking Water Figure Data (V1)

description: Data for figures associated with the manuscript entitled Strong Base Anion Exchange Selectivity of Nine Perfluoroalkyl Chemicals Relevant to Drinking Water.
DOI: 10.23719/1529119
title: Increased endocrine activity of xenobiotic chemicals as mediated by metabolic activation - data set

description: Data set to support the manuscript "Increased endocrine activity of xenobiotic chemicals as mediated by metabolic activation". Contains analytical measurement of metabolites, binding potential to the estrogen receptor, and gene activation to vitellogenin induction in the rainbow trout assays. Chemicals of interest in this study were phenolphthalein, phenolphthalin, and 4,4’-methylenedianiline.
DOI: 10.23719/1529141
title: Nutrient Explorer Application Default Datasets from LAGOS-NE and National Nutrient Inventories

description: This dataset contains the default data provided with the Nutrient Explorer Downloadable application (SI: https://cfpub.epa.gov/si/si_public_record_Report.cfm?Lab=CPHEA&dirEntryId=358039), which is used for testing out the features and capabilities of the app.  The dataset is based off of LAGOS-NE, lake total nitrogen and total phosphorus concentration data from lakes in the Northeast United States and is combined with a number of explanatory variables such as geology, land use, climate, nutrient inputs, and lake characteristics.