cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12623043
title: Datasets for the manuscript: "Metabolic disruption of zebrafish (Danio rerio) embryos by bisphenol A. An integrated metabolomic and transcriptomic approach"

description: Metabolomics datasets for the manuscript: Metabolic disruption of zebrafish (Danio rerio) embryos by bisphenol A. An integrated metabolomic and transcriptomic approach

Instrumental conditions

LC-MS analyses were carried out using an Agilent Infinity 1200 series LC system coupled with an orthogonal G1385-44300 interface (Agilent Technologies, Waldbronn, Germany) to a 6220 oa-TOF LC/MS mass spectrometer (Agilent Technologies). LC control and separation data acquisition were performed using ChemStation software (Agilent Technologies) that was running in combination with the MassHunter workstation software (Agilent Technologies) for control and data acquisition of the TOF mass spectrometer. For the chromatographic separations, an HILIC TSK Gel Amide-80 column (250 mm length, 2.1 mm inner diameter and 5 μm particle size, Tosoh Bioscience, Tokyo, Japan) was used at 25 °C with gradient elution at a flow rate of 0.15 mL·min−1. Elution gradient was performed using solvent A (acetonitrile) and solvent B (5 mM of ammonium acetate adjusted to pH 5.5 with acetic acid) as follows: 0–8 min, linear gradient from 25 to 30% B; 8–12 min, from 30 to 60% B; 12–17 min, 60% B; 17–20 min, back linearly from 60% to 25% B; and from 20 to 27 min, 25% B. Solvents were degassed for 15 min by sonication before use. Sample injection was performed with an autosampler at 4 °C, and the injection volume was 5 μL. All samples (six replicates per treatment: control, 4.4 μM BPA, 8.8 μM BPA and 17.5 μM BPA) were randomly injected. Several blank samples and calibration standards were also randomly injected to further assess the stability of the instrument among runs.

The TOF mass spectrometer operated both in positive and negative mode using the following parameters: capillary voltage 4000 V, drying gas temperature 350 °C, drying gas flow rate 8 L·min−1, nebulizer gas 32 psi, fragmentor voltage 150 V, skimmer voltage 65 V and OCT 1 RF Vpp voltage 300 V. Data were collected in profile mode at 1 spectrum/s (approximately 10 000 transients/spectrum) with an m/z range of 85–1000 working in the extended dynamic range mode (2 GHz) with the mass range set to standard.

List of files

Negative ionization



Control x 12 samples - 6 x 2 replicates

BPA 1 ppm x 12 samples - 6 x 2 replicates

BPA 2 ppm x 12 samples - 6 x 2 replicates

BPA 4 ppm x 12 samples - 6 x 2 replicates


Positive ionization



Control x 12 samples - 6 x 2 replicates

BPA 1 ppm x 12 samples - 6 x 2 replicates

BPA 2 ppm x 12 samples - 6 x 2 replicates

BPA 4 ppm x 12 samples - 6 x 2 replicates
DOI: 10.5281/zenodo.12623979
title: Peatland trees dendrometer dataset Sweden

description: This csv table shows all band and point dendrometers hourly time series (temperature and diameter hourly variability). IDs starting with "S" correspond to the Skogaryd-Mycklemossen peatland (58.365684, 12.169687) dataset; "F", to Fäjemyr (56.266363, 13.553884); "SM", to Store Mosse (57.267947, 13.917168) and "D" to Dumme Mosse (57.754818, 14.050344). The Date is in the DD.MM.YY hh:mm format. A DOY column corresponds to the day of the year, the Julian day.
DOI: 10.5281/zenodo.12623980
title: Peatland trees dendrometer dataset Sweden

description: This csv table shows all band and point dendrometers hourly time series (temperature and diameter hourly variability). IDs starting with "S" correspond to the Skogaryd-Mycklemossen peatland (58.365684, 12.169687) dataset; "F", to Fäjemyr (56.266363, 13.553884); "SM", to Store Mosse (57.267947, 13.917168) and "D" to Dumme Mosse (57.754818, 14.050344). The Date is in the DD.MM.YY hh:mm format. A DOY column corresponds to the day of the year, the Julian day.
DOI: 10.15468/dl.bwxk4u
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parargyrops edita Tanaka, 1916"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008481-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12624294
title: Microcore cell counting

description: This dataset shows the raw cell countings values that we have done from anatomical cross sections of peatland trees microcores. The first column corresponds to the tree ID, the second to the Date in the format DD.MM.YY hh:mm, the third column corresponds to the type of cell counting: 3EN corresponds to the number of enlarging cells, 2TH corresponds to the number of thickening cells, ans 1MA correpsonds to the number of mature cells.
DOI: 10.5281/zenodo.12624295
title: Microcore cell counting

description: This dataset shows the raw cell countings values that we have done from anatomical cross sections of peatland trees microcores. The first column corresponds to the tree ID, the second to the Date in the format DD.MM.YY hh:mm, the third column corresponds to the type of cell counting: 3EN corresponds to the number of enlarging cells, 2TH corresponds to the number of thickening cells, ans 1MA correpsonds to the number of mature cells.
DOI: 10.15468/dl.7k9bgr
title: Occurrence Download

description: A dataset containing 196330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is RUS.11_1",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 196330 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008472-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bqgak
title: Occurrence Download

description: A dataset containing 5254 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lutjanus fulviflamma (Forsskål, 1775)"
 ]
}

 The dataset includes 5254 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008482-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vkssb
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "Year is 2020",
 "MediaType is Image",
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "ScientificName is Plantae"
 ]
}

 The dataset includes 58 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008483-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13897361
title: Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning

description: Dataset used in "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"

https://www.biorxiv.org/content/10.1101/2024.09.23.614484v1
DOI: 10.5281/zenodo.13897362
title: Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning

description: Dataset used in "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"

https://www.biorxiv.org/content/10.1101/2024.09.23.614484v1
DOI: 10.5281/zenodo.13897354
title: Datasets for characterization of melanin nanoparticles loaded with RhB
DOI: 10.5281/zenodo.13897355
title: Datasets for characterization of melanin nanoparticles loaded with RhB
DOI: 10.5281/zenodo.13896447
title: Bayesian MC simulation results for BC sources and seasonal fbb in residential sector for major emission provinces

description: There are two kinds of datasets: Bayesian MC simulation results for BC sources and seasonal fraction of bb in the residential sector for nine major emission provinces.
DOI: 10.15468/dl.k1fprq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is SysTax - Zoological Collections",
 "TaxonKey is Neritina valentina Graells, 1846"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009166-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ov0sn
title: Occurrence Download

description: A dataset containing 247 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Nannofossil abundance of Hole 84-570"
 ]
}

 The dataset includes 247 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007740-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dwcpef
title: Occurrence Download

description: A dataset containing 335 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 2015-2019",
 "Geometry POLYGON((-75.58594 47.15984,-75.23438 38.54817,-58.71094 45.58329,-63.28125 50.73646,-75.58594 47.15984))",
 "HasCoordinate is true",
 "TaxonKey is Semibalanus balanoides (Linnaeus, 1767)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 335 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043945-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z37ejd
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "TaxonKey is Lupinus mutabilis Sweet"
 ]
}

 The dataset includes 108 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068733-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnvxje
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Abies pinsapo Boiss."
 ]
}

 The dataset includes 397 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010142-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1k1pcu
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spilanthes Jacq.",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 }
 ]
}

 The dataset includes 93 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043947-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b23aj5
title: Occurrence Download

description: A dataset containing 669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lomatium grayi (J.M.Coult. & Rose) J.M.Coult. & Rose"
 ]
}

 The dataset includes 669 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015475-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jl2cmo
title: Occurrence Download

description: A dataset containing 169821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "TaxonKey is Urtica dioica L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 169821 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007280-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxi0wf
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Romerolagus diazi (Ferrari-Pérez, 1893)"
 ]
}

 The dataset includes 377 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043947-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qke8r
title: Occurrence Download

description: A dataset containing 329 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hesperochiron pumilus (Griseb.) Porter"
 ]
}

 The dataset includes 329 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015464-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk2r2r
title: Occurrence Download

description: A dataset containing 70859 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bryophyte Herbarium, Oslo (O) UiO"
 ]
}

 The dataset includes 70859 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010122-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9t9b6k
title: Occurrence Download

description: A dataset containing 2224961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((10.64575 46.81181,9.63501 46.79677,8.07495 46.90196,6.82251 46.44969,6.60278 45.17865,8.31665 44.7121,10.60181 44.80571,11.85425 45.34877,12.33765 46.08514,11.41479 46.6763,10.64575 46.81181))",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Country derived from coordinates",
 "Issue is Occurrence status inferred from individual count"
 ]
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2224961 records from 841 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010116-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uhdr0d
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tehuana Panero & Villaseñor",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 }
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043952-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tb3y4n
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plagiobothrys figuratus (Piper) I.M.Johnst."
 ]
}

 The dataset includes 132 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015469-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dyxikd
title: Occurrence Download

description: A dataset containing 127712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Greece",
 "InstitutionCode is ld",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 127712 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008521-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qscrzn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heracleum wilhelmsii Fisch. & Avé-Lall.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055337-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ue5qpv
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Minuartia pusilla (S.Watson) Mattf."
 ]
}

 The dataset includes 103 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015465-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.suycsu
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Tuxtla",
 "TaxonKey is Tuxtla Villaseñor & Strother"
 ]
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 }
 ]
}

 The dataset includes 34 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043958-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5pdjs
title: Occurrence Download

description: A dataset containing 1909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-1.05469 -42.08517,54.49219 -42.08517,54.49219 1.33583,-1.05469 1.33583,-1.05469 -42.08517))",
 "HasGeospatialIssue is false",
 "TaxonKey is Coccinellidae",
 "Year 2010-2021"
 ]
}

 The dataset includes 1909 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010134-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kacknp
title: Occurrence Download

description: A dataset containing 9966 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Verbesina L.",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 }
 ]
}

 The dataset includes 9966 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043959-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4axzb
title: Occurrence Download

description: A dataset containing 4138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Canis lupus Linnaeus, 1758"
 ]
}

 The dataset includes 4138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015481-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn94c9
title: Occurrence Download

description: A dataset containing 28265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Oenothera glazioviana Micheli"
 ]
}

 The dataset includes 28265 records from 402 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010145-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfaxdv
title: Occurrence Download

description: A dataset containing 229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Empodisma gracillimum (F.Muell.) L.A.S.Johnson & D.F.Cutler"
 ]
}

 The dataset includes 229 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002877-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u0mifu
title: Occurrence Download

description: A dataset containing 2726 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "SpeciesKey is Limonium pinillense R.Roselló & Peris",
 "SpeciesKey is Limonium tuberculatum (Boiss.) Kuntze",
 "SpeciesKey is Limonium perplexum L.Sáez & Rosselló",
 "SpeciesKey is Limonium tournefortii (Boiss.) Erben",
 "SpeciesKey is Limonium papillatum (Webb & Berthel.) Kuntze",
 "SpeciesKey is Limonium catalaunicum (Willk. & Costa) Pignatti",
 "SpeciesKey is Limonium grosii L.Llorens",
 "SpeciesKey is Limonium carvalhoi Rosselló & L.Sáez",
 "SpeciesKey is Limonium carthaginense (Rouy) C.E.Hubb. & Sandwith",
 "SpeciesKey is Limonium sventenii A.Santos & M.Fernández",
 "SpeciesKey is Limonium sucronicum Erben",
 "SpeciesKey is Limonium geronense Erben",
 "SpeciesKey is Limonium subglabrum Erben",
 "SpeciesKey is Limonium squarrosum Erben",
 "SpeciesKey is Limonium spectabile (Svent.) Kunkel & Sunding",
 "SpeciesKey is Limonium soboliferum Erben",
 "SpeciesKey is Limonium silvestrei Aparicio",
 "TaxonKey is Limonium brassicifolium subsp. macropterum (Webb & Berthel.) G.Kunkel",
 "SpeciesKey is Limonium estevei Fern.Casas",
 "SpeciesKey is Limonium erectum Erben",
 "SpeciesKey is Limonium bourgeaui (Webb) Kuntze",
 "SpeciesKey is Limonium migjornense L.Llorens",
 "SpeciesKey is Limonium ejulabilis Rosselló, Mus & J.X.Soler",
 "SpeciesKey is Limonium boirae L.Llorens & Tébar",
 "SpeciesKey is Limonium dufourii (Girard) Kuntze",
 "SpeciesKey is Limonium benmageci Marrero Rodr.",
 "SpeciesKey is Limonium mansanetianum M.B.Crespo & Lledó",
 "SpeciesKey is Limonium malacitanum B.Diez",
 "SpeciesKey is Limonium majus (Boiss.) Erben",
 "SpeciesKey is Limonium barceloi Gil & L.Llorens",
 "SpeciesKey is Limonium magallufianum L.Llorens",
 "SpeciesKey is Limonium macrophyllum (Brouss.) O.Ktze.",
 "SpeciesKey is Limonium relicticum R.Mesa & A.Santos",
 "SpeciesKey is Limonium redivivum (Svent.) Kunkel & Sunding",
 "SpeciesKey is Limonium lobetanicum Erben",
 "SpeciesKey is Limonium dendroides Svent.",
 "SpeciesKey is Limonium quesadense Erben",
 "SpeciesKey is Limonium puberulum (Webb) Kuntze",
 "SpeciesKey is Limonium antonii-llorensii L.Llorens",
 "SpeciesKey is Limonium virgatum (Willd.) Fourr."
 ]
 }
 ]
}

 The dataset includes 2726 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034052-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.