cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/6cv23-m0y43
title: V.cholerae

description: This was imaged to study Yi-wei Msh in V.cholerae. This strain expresses Msh pilus but not any other pili.
description: <strong>Tilt Series Date:</strong> 2017-01-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Yi-wei</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth and freezing conditions: pg 95-97 in notebook. next time for vitrobot use: 6, 2.5, 1. 3.5 and 4 ul sample volume</p>
<strong>Sample Preparation:</strong> single tilt. constant angular increment, step: 1.0. tilt range: -60, 60.         dosage: 160e/A2. defocus: -6um. magnification: 27500.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-01-06-109/3dimage_80503/</p>sq110017_full.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-01-06-109/3dimage_80503/sq110017_full.rec"
        > <i class="download icon"></i> Download </a></p>

        sq110017.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-01-06-109/rawdata/sq110017.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hrvmw-rm579
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2015-10-19</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> AZ21, ΔsdpABC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Zielinska, A., Billini, M., Moll, A., Kremer, K., Briegel, A., Izquierdo Martinez, A., Jensen, G. J. and Thanbichler, M. (2017). Lytm factors affect the recruitment of autolysins to the cell division site in Caulobacter crescentus. Molecular Microbiology 106, 419-438.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-19-50/3dimage_70585/</p>AZ21SetB0013_full.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-19-50/3dimage_70585/AZ21SetB0013_full.rec"
        > <i class="download icon"></i> Download </a></p>

        AZ21SetB0013.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-19-50/rawdata/AZ21SetB0013.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3prc6-pcq82
title: T5_504Cys_Aumalemaide_5nm

description: This is a sample in which N terminus residue 504 has been mutated to Cys residue. Mini cells have been isolated by high speed centrifugation and cells are Au malemaide labelled. No fiducials added.
description: <strong>Tilt Series Date:</strong> 2017-02-17</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> EC93 stick, UPEC536</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 125.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> Zach Ruhe and Chris Hayes</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Freezing in vitrobot. Humidifier was not working. I wouldn't really trust the conditions.See pages 104-105</p>
<strong>Sample Preparation:</strong> Sample prepared by Taylor Steven</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-48/rawdata/</p>sq50007.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-48/rawdata/sq50007.mrc"
        > <i class="download icon"></i> Download </a></p>

        sq50007.rec,  Reconstruction (Pixel Size 1.56 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-02-17-48/3dimage_82532/sq50007.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mw39p-cwh70
title: Proteus

description: Swarmer cell, long cell, Proteus mirabillis .  [added 2018-08-03 20:59:25] Proteus cell
description: <strong>Tilt Series Date:</strong> 2015-11-19</p>
<strong>Data Taken By:</strong> Qing Yao</p>
<strong>Species / Specimen:</strong> Proteus mirabilis</p>
<strong>Strain:</strong> HI4320</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33599x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Douglas B. Weibel lab, Wisconsin-Madison university. Preparethe cell and design the research.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> This sample is prepared with the help of George Aucer, Ph. D student at Douglas B. Weibel lab, Wisconsin-Madison university</p>
<strong>Sample Preparation:</strong> OD=6, 4 ul loading. bloting condition 6s force/ 3s time/ 1s dry time, QUANTIFOIL® – Holey Carbon Films 200 mesh</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2015-11-19-21/3dimage_71101/</p>atlas40007_part121_55.rec,  Reconstruction (Pixel Size 1.28 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2015-11-19-21/3dimage_71101/atlas40007_part121_55.rec"
        > <i class="download icon"></i> Download </a></p>

        atlas40007.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/qya2015-11-19-21/rawdata/atlas40007.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/q84vp-1rc35
title: Myxococcus xanthus SA6892

description: Strain SA6892 (minor pilin cluster 2+3 deletion, Δmxan1021-1017; Δmxan1369-1365).Grid box YWC222
description: <strong>Tilt Series Date:</strong> 2016-08-22</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3.0°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK vi) settings: 100% humidity, 3.5µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu Finder.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-22-46/rawdata/</p>20160822_YWC222_10047.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-22-46/rawdata/20160822_YWC222_10047.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160822_YWC222_10047_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dm7sr-0pk79
title: nanochemowt_2ndday

description: This is my fourth attempt to grow Shewanella. This culture is wt grown at caltech in chemostat.Frozen here in vitrobot.
description: <strong>Tilt Series Date:</strong> 2015-06-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> This sample was frozen after being in oxygen deficiency for 40h. Checked by SEM and had nanowires. Vitrobot freezing conditions 6s blot force, 3s blot time, 1s drain time, 4ul on grid.</p>
  psa2015-06-06-43_slicer17017.jpg: F7 chemoreceptor?
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-43/rawdata/</p>nanochemowt2day_atlas30003.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-43/rawdata/nanochemowt2day_atlas30003.mrc"
        > <i class="download icon"></i> Download </a></p>

        nanochemowt2day_atlas30003_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-43/3dimage_58155/nanochemowt2day_atlas30003_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.60520/ieda/113892
title: The apatite and zircon (U-Th)/He data for the Yunkai Mountains

description: These data mainly consist of zircon and apatite (U-Th)/He data collected from the Gaozhou-Luoding horizontal cross-section in Yunkai Mountains. All the laboratory measurements were conducted in the Helium dating laboratory at the University of Arizona. The apatite and zircon (U-Th)/He (AHe and ZHe) dates were determined and used to reconstruct the paleotopography of the horizontal cross-section and the thermal histories of the vertical profiles.
description: Ding, R., Lu, S., Chen, Y., Lu, H., Li, L., Liu, W., Wu, J., Zhang, K., Zou, H. and Zhang, P., 2025. Reconstruction of paleotopography of the Yunkai Mountains in south China: Insights into the onset of the Asian monsoon. CATENA, 258: 109256.
DOI: 10.7910/dvn/talqzl
title: Replication Data for: Bulk Ingestion of Congressional Actions and Materials Dataset

description: Replication archive for Nature Scientific Data article "Bulk Ingestion of Congressional Actions and Materials Dataset"
DOI: 10.15482/usda.adc/27941706.v1
title: Data from: Assessing agronomic and physiological traits during reproductive developmental stages for breeding Upland drought tolerant cotton

description: Developing new cultivars with drought resilience is difficult for cotton breeders/geneticists, because there is a lack of knowledge of which traits to target for improvement. Morphological and agronomic data was collected from two cultivars representing different production regions [far west – ‘PhytoGen 72’ (PHY72) and midsouth – ‘Stoneville 474’ (STV474)] of the US. These data were used to evaluate which traits are associated with drought resilience under semi environmental control (greenhouse). The dataset includes twenty eight traits that were evaluated for two irrigation regimes during the six critical reproductive stages of 50 % squaring, 100 % squaring, 50 % flowering, peak bloom and early boll setting, advanced flowering and boll setting, and initial boll cracking. The published article, based on these data, showed that traits such as leaf temperature (peak bloom and early boll setting), chlorophyll fluorescence yield (50 % squaring), number of leaves (peak bloom and early boll setting), flowers (50 % flowering) bolls (peak bloom and early boll setting and initial boll cracking), and plant height (50 % squaring and peak bloom and early boll setting) as single targets or in combination, could be used in selection strategies for breeding and genetically improving cotton for drought resiliency.
DOI: 10.15482/usda.adc/27941706
title: Data from: Assessing agronomic and physiological traits during reproductive developmental stages for breeding Upland drought tolerant cotton

description: Developing new cultivars with drought resilience is difficult for cotton breeders/geneticists, because there is a lack of knowledge of which traits to target for improvement. Morphological and agronomic data was collected from two cultivars representing different production regions [far west – ‘PhytoGen 72’ (PHY72) and midsouth – ‘Stoneville 474’ (STV474)] of the US. These data were used to evaluate which traits are associated with drought resilience under semi environmental control (greenhouse). The dataset includes twenty eight traits that were evaluated for two irrigation regimes during the six critical reproductive stages of 50 % squaring, 100 % squaring, 50 % flowering, peak bloom and early boll setting, advanced flowering and boll setting, and initial boll cracking. The published article, based on these data, showed that traits such as leaf temperature (peak bloom and early boll setting), chlorophyll fluorescence yield (50 % squaring), number of leaves (peak bloom and early boll setting), flowers (50 % flowering) bolls (peak bloom and early boll setting and initial boll cracking), and plant height (50 % squaring and peak bloom and early boll setting) as single targets or in combination, could be used in selection strategies for breeding and genetically improving cotton for drought resiliency.
DOI: 10.7910/dvn/na1ql1
title: Figure S1

description: Figure S1. Real-time size characterization of aerosolized polyamide powder identifies micro- and nano-sized particles as characterized by electrical mobility (A; SMPS) and aerodynamic diameter (B; ELPI). SMPS data (A) are presented as geometric mean ± SEM. HR-ELPI data (B) is presented as representative data acquired on January 11, 2023.
DOI: 10.15468/dl.q3mcqu
title: Occurrence Download

description: A dataset containing 83588 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coscoroba coscoroba"
 ]
}

 The dataset includes 83588 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000952-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.34y88z
title: Occurrence Download

description: A dataset containing 31144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Gypsophila repens"
 ]
}

 The dataset includes 31144 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000984-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9y46yk
title: Occurrence Download

description: A dataset containing 83588 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coscoroba coscoroba"
 ]
}

 The dataset includes 83588 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000951-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fvfju
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pomatorhinus ruficollis",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 100 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000986-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etp6mq
title: Occurrence Download

description: A dataset containing 1436797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Prunus padus, Prunus pensylvanica, Prunus persica, Prunus serotina, Prunus serrulata, Prunus spinosa, Prunus subhirtella, Prunus tomentosa, Psathyrostachys juncea, Pseudelephantopus spicatus, Pseuderanthemum carruthersii, Pseudognaphalium luteoalbum, Pseudolysimachion longifolium, Pseudosasa humilis, Pseudosasa japonica, Pseudotsuga menziesii, Psidium cattleianum, Psidium guajava, Psidium guineense, Psoralea pinnata)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 1436797 records from 3711 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000974-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hs7ncx
title: Occurrence Download

description: A dataset listing the 153 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.10_1",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Colubridae, Viperidae, Elapidae, Typhlopidae, Boidae)"
 ]
}

 The dataset's 153 records were derived from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022635-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/habjig
title: Replication Data for: Uplifting Winds: The Surprisingly Positive Community-Wide Impact of Wind Energy Installations on Property Values

description: This data archive contains the code and non-restricted datasets to replicate the results in Hoen, B., Brunner, E., & Schwegman, D. "Uplifting Winds: The Surprisingly Positive Community-Wide Impact of Wind Energy Installations on Property Values," Energy Research & Social Science (ERSS).
DOI: 10.15468/dl.m8myfe
title: Occurrence Download

description: A dataset containing 574 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus rubra",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 574 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000090-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29994877
title: FAIRUrbTemp dataset: street-level urban air temperature measurements across European networks

description: FAIRUrbTemp dataset is the first European-level dataset that consists of street-level (2-4 m) air temperature values from 12 European cities with different climates. In addition to level up the dataset, we developed an automatic serially quality control approach, which consists of 7 steps, and checked the quality of the dataset from different aspects. The data were collected from project partners of the COST Action FAIRNESS 20108 project. The aim was to collect data in the not cleaned version as much as possible and then apply the defined Quality Control to all of them and compare them with the same measure. Further detailed description of the dataset is presented in: <br>Amini, S., Huerta, A., Franke, J., Brugnara, Y., Caluwaerts, S., Anet, J., Savic, S., Gubler, M., Steeneveld, G.J.,Chapman, L., Meier, F., Dubreuil, V., Christen, A., Zeeman, M., Lalic, B., Schlögl, S., Käyhkö, J., Azadfar, A., Brönnimann, S. (2025) Compilation and quality assessment of street-level urban air temperature measurements across European networks.<br><br><br>File format: zip file of SEF files (Station Exchange format in *.tsv format) <br>Short description of the files: street-level air temperature data in each city. It consists of different sub-groups. <br>RAW: The raw data shared by the project partner. QC: The quality-controlled version of the data. Flagged data and the reasons for the flags are described in the Meta section of the SEF files. <br><br>Hourly data: Aggregated data from the raw version and quality-controlled (QC) data. Results of the QC check are also documented in the Meta section. <br>DailyMax:Maximum values for each day, based on the QCed version. <br>DailyMin: Minimum values for each day, based on the QCed version.<br>