cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3819868
title: Data and code to perform the"Target deformation" workflow in R: virtual reconstruction of the Equus stenonis holotype skulll

description: Data and code to perform the"Target deformation" workflow in R: virtual reconstruction of the Equus stenonis holotype skulll. TargetDeformation.R: R code with for the Target Deformation procedure.<br> IGF560.ply: 3D mesh of the holotype IGF560 in ply extension.<br> IGF560_set.txt: landmark set of the holotype IGF560.<br> Dm. 5/154.3/4.A4.5.ply: 3D mesh of Dm 5/154.3/4.A4.5 in .ply extension.<br> Dm_set.txt: landmark set of the Dm 5/154.3/4.A4.5 sample.<br> IGF11023: 3D mesh of IGF11023 in.ply extension.<br> IGF11023_set.txt: landmark set on the IGF11023 sample.<br> IGF560R: 3D mesh of IGF560R in.ply extension.<br> IGF560W: 3D mesh of IGF560W in.ply extension.<br> IGF560R-s: 3D mesh of IGF560R-s in.ply extension.<br> IGF560W-s: 3D mesh of IGF560W-s in.ply extension.<br> IGF560_IGF560R_IGF560W.html: file that contain WebGL code to reproduce the 3D meshes of IGF560, IGF560R and IGF560W in a browser.<br> IGF560Rs_IGF560Ws.html: file that contain WebGL code to reproduce the 3D meshes of IGF560R-S and IGF560W-S in a browser.<br> IGF560W Mesh area variation.html: file that contain WebGL code to reproduce two 3d meshes of IGF560W using localmeshDist() and meshdist() in a browser.<br>
DOI: 10.17632/4s899nhfdf.1
title: Data for: Interactions between peroxyacetyl nitrate and water in the gas phase

description: IR spectrum in DPT format
DOI: 10.17632/5z7ppzwpcw.1
title: Genome-scale screening of the deubiquitinase subfamily identifies USP49 as a protein stabilizer of PAX9 and MSX1 regulating odontogenesis

description: Deubiquitination of proteins by DUBs has emerged as a key regulator of protein stability and has been shown to be critically involved in signal transduction cascades. However, the function and regulation of individual DUBs are not well understood at the molecular level. Several screening approaches to identify DUBs and their target protein substrates in diverse cellular functions have been reported previously. For example, shRNA/siRNA libraries targeting different DUBs or overexpression of ectopically introduced DUBs have been used to investigate the impact of DUB function on target substrate protein stability. These conventional methods have several limitations, such as the limitation of RNAi or shRNA-based methods to transcripts, and these techniques often result in partial repression or restoration of gene functions in a few generations, with temporary effects. The results obtained from these methods may not be accurate and might lead to misinterpretations of the data. To overcome this, we developed a loss-of-function study based on individually generated single cell-derived biallelic DUB knockout clones in mammalian cells and provide an alternate and improved model to explore the molecular mechanism of DUBs. In this study, we used CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated) mediated DUB knockout screening kit based on genome-scale knockout of the entire set of genes that encode human ubiquitin-specific proteases (USPs), which are the largest subfamily of DUBs (&gt;50 genes), and then we systematically applied the panel to screen DUB candidates that might regulate PAX9 and MSX1 proteins. PAX9 and MSX1 are critical for the transition in odontogenic potential from epithelium to mesenchyme. Although genetic mutations in PAX9 and MSX1 cause tooth agenesis, the regulation of PAX9 and MSX1 protein levels by deubiquitinating enzymes (DUBs) might be a crucial factor during tooth development. Our screening system identified USP49 as a key regulator of PAX9 and MSX1 protein stability. USP49 interacts and deubiquitinates PAX9 and MSX1 protein and upregulates several odontogenic transcription factors in human dental pulp stem cells (hDPSCs). In animal models, USP49 depletion was correlated with downregulation of Pax9 and Msx1 protein expression resulting in several morphological defects in calcified tissues such as reduced dentin growth, reduced enamel space, abnormal enamel formation, and irregular mineralization. Thus, the depletion of USP49 leads to an inadequate transition from bud to cap stage in the early stages of tooth development. This novel finding suggests that the USP49-PAX9-MSX1 axis could serve as a prognostic marker and novel regulatory target in odontogenesis and can serve as a catalyst for bioengineering tooth implant research to improve clinical care.
DOI: 10.17632/6k4tnnt4rz.1
title: ANN for Heat pump

description: Results of fitting regression and ANN models to manufacturer's and measured data
DOI: 10.17632/gtvr5srp38.1
title: Further analysis of the influence of interstage configurations on two-stage vapor compression heat pump systems

description: Some source data of the figures in the paper, with Excel format.
DOI: 10.17632/kfdy7x6h9g.1
title: Data for: Interactions between peroxyacetyl nitrate and water in the gas phase

description: -IR spectrum in DPT format - Datasheet for Kintecus simulations - Analysis of FTIR spectrum
DOI: 10.17632/mb8sx3y4th.2
title: data_Spina_bifida

description: Data for the paper entitled "Magnitude processing in populations with spina-bifida: the role of visuospatial and working memory processes" submitted
DOI: 10.17632/mssgvrt7rh.1
title: Enhancer-driven lncRNA BDNF-AS activates RNH1/TRIM21/mTOR cascade to induce endocrine resistance and malignant progression of breast cancer. Lin et al.

description: LncRNA microarray
DOI: 10.5281/zenodo.3820859
title: customized gtf file from Ensembl version 93 mm10

description: The gtf from Ensembl version 93 was filtered to remove readthrough transcripts and all non-coding transcripts from a protein-coding gene. In addition, all genes with the same gene name which overlaps were merged under the same gene to avoid ambiguous reads.
DOI: 10.5281/zenodo.3820860
title: customized gtf file from Ensembl version 93 mm10

description: The gtf from Ensembl version 93 was filtered to remove readthrough transcripts and all non-coding transcripts from a protein-coding gene. In addition, all genes with the same gene name which overlaps were merged under the same gene to avoid ambiguous reads.
DOI: 10.15784/601319
title: Labile Organic Carbon distributions on the West Antarctic Peninsula Shelf

description: This data set is used to describe a new technique for assessing labile organic carbon (LOC) abundances and mean residence times in marine sediments. Radiocarbon is used to determine abundances of labile organic carbon and then a diagenetic organic carbon model, coupled with sediment biotrubation coefficients, is used to assess LOC mean residence times.
DOI: 10.17632/5z7ppzwpcw.2
title: Genome-scale CRISPR/Cas9 screening of the deubiquitinase subfamily identifies USP49 as a protein stabilizer of PAX9 and MSX1 regulating odontogenesis

description: Deubiquitination of proteins by DUBs has emerged as a key regulator of protein stability and has been shown to be critically involved in signal transduction cascades. However, the function and regulation of individual DUBs are not well understood at the molecular level. Several screening approaches to identify DUBs and their target protein substrates in diverse cellular functions have been reported previously. For example, shRNA/siRNA libraries targeting different DUBs or overexpression of ectopically introduced DUBs have been used to investigate the impact of DUB function on target substrate protein stability. These conventional methods have several limitations, such as the limitation of RNAi or shRNA-based methods to transcripts, and these techniques often result in partial repression or restoration of gene functions in a few generations, with temporary effects. The results obtained from these methods may not be accurate and might lead to misinterpretations of the data. To overcome this, we developed a loss-of-function study based on individually generated single cell-derived biallelic DUB knockout clones in mammalian cells and provide an alternate and improved model to explore the molecular mechanism of DUBs. In this study, we used CRISPR/Cas9 (clustered regularly interspaced short palindromic repeats/CRISPR-associated) mediated DUB knockout screening kit based on genome-scale knockout of the entire set of genes that encode human ubiquitin-specific proteases (USPs), which are the largest subfamily of DUBs (&gt;50 genes), and then we systematically applied the panel to screen DUB candidates that might regulate PAX9 and MSX1 proteins. PAX9 and MSX1 are critical for the transition in odontogenic potential from epithelium to mesenchyme. Although genetic mutations in PAX9 and MSX1 cause tooth agenesis, the regulation of PAX9 and MSX1 protein levels by deubiquitinating enzymes (DUBs) might be a crucial factor during tooth development. Our screening system identified USP49 as a key regulator of PAX9 and MSX1 protein stability. USP49 interacts and deubiquitinates PAX9 and MSX1 protein and upregulates several odontogenic transcription factors in human dental pulp stem cells (hDPSCs). In animal models, USP49 depletion was correlated with downregulation of Pax9 and Msx1 protein expression resulting in several morphological defects in calcified tissues such as reduced dentin growth, reduced enamel space, abnormal enamel formation, and irregular mineralization. Thus, the depletion of USP49 leads to an inadequate transition from bud to cap stage in the early stages of tooth development. This novel finding suggests that the USP49-PAX9-MSX1 axis could serve as a prognostic marker and novel regulatory target in odontogenesis and can serve as a catalyst for bioengineering tooth implant research to improve clinical care.
DOI: 10.17632/c4s6j94546.1
title: Student Grade Data: Grit

description: Estimating Student Fixed Effects in Explaining Grade Outcomes: The Importance of Grit in Determining Student Performance Grit is a term that has emerged in the literature as a way of describing a person’s persistence over time to overcome challenges and accomplish goals. Past measures of grit have been based on self-reported data. We develop a model of student grit that does not rely on self-reported data by employing a rich data set and fixed effects regression techniques to model student letter grade in a course, a proxy for student learning and success, while controlling for the student’s measured cognitive performance, sociodemographic variables, academic rank, relative high school performance, subject matter of the course, instructor, advisor and an individual student effect, interpreted as grit. We find the individual student effect explains significant variation in student academic performance in the classroom. We also demonstrate a method for predicting student grit using secondary education data. Data represents a cohort of economics majors at a public four-year, full-time selective university located in the midwest. Rows represent a single university course taken by the student. Columns: Grade Grade earned by the student Parent_Work_Income Parent's income, normalized SCHOOL_GPA Student's high school grade point average, normalized ACT_COMPOSITE Student's composite ACT score, normalized STUDENT_RANK Student's college rank when the course was taken (Freshman, Sophomore, etc.) Age Student's age when the course was taken, normalized GENDER_DESC Student's self-identified gender, URM Under-represented minority status Student.22 Student indicators Student.01 Student.36 Student.04 Student.05 Student.23 Student.15 Student.28 Student.27 Student.10 Student.11 Student.12 Student.13 Student.14 Student.30 Student.16 Student.18 Student.31 Student.19 Student.20 Student.03 Student.09 Student.26 Student.21 Student.02 Student.06 Student.32 Student.08 Student.29 Student.07 Student.17 Student.25 Student.33 Student.34 Student.24 Student.35 SubjECON Subject indicators SubjMGT SubjFIN SubjENGL SubjACCT SubjCIS SubjMKT SubjCOMM SubjMATH SubjBIOL SubjBLAW SubjHIST SubjAE SubjPSY SubjMUS SubjELCT SubjPE SubjART SubjPOLS SubjSPAN Instructor.04 Instructor indicators Instructor.08 Instructor.07 Instructor.03 Instructor.16 Instructor.05 Instructor.12 Instructor.02 Instructor.06 Instructor.11 Instructor.13 Instructor.10 Instructor.01 Instructor.14 Instructor.09 Instructor.15 Advisor.02 Advisor indicators Advisor.01 Advisor.04 Advisor.11 Advisor.05 Advisor.09 Advisor.07 Advisor.03 Advisor.06 Advisor.10 Advisor.08 Advisor.12
DOI: 10.17632/mb8sx3y4th.3
title: data_Spina_bifida

description: Data for the paper entitled "Magnitude processing in populations with spina-bifida: the role of visuospatial and working memory processes" submitted
DOI: 10.17632/mzsxv3dg9n.1
title: Dataset for testing on insulation panels to sustain jet impingement at high temperatures

description: We conducted an experimental study to develop high-temperature-proof panels. A total of 36 panels based on nine designs with three commonly-found core materials (i.e., polycrystalline filaments, silica aerogel, and aluminum silicate) were tested under an impinging jet at temperatures ranging 500–585°C.
DOI: 10.17632/s2v6868hc3.2
title: Data_Hebb_children

description: Data from the Manuscript submited to HBM in February 27th 2020. Behavioral and fMRI data
DOI: 10.25910/5eb9c0c5f35ca
title: Dataset for Invasive mammalian predators habituate to and generalise avian prey cues: a mechanism for conserving native prey

description: This is a supplementary dataset for Price et al (2020) "Invasive mammalian predators habituate to and generalize avian prey cues: a mechanism for conserving native prey" Ecological Applications. This project is funded by New Zealand Ministry of Business Innovation and Employment Smart Ideas Grant C09X1505
DOI: 10.17632/28y9tjyvn3.1
title: Car Park Preference Data

description: For both SAV and non-SAVs, the trip event is initiated as they enter the network from the three various entrances. These entities decide the route to individual carparks using carpark preference survey data. Although it is difficult to gather data of all routes and carpark choice a driver decides to choose but a weeks’ carpark count gave an indication on how drivers choose their parking assuming that all vehicles eventually end up in a carpark. These counts carried out between 11-15 June 2018 provides information about user preference for the jth car park entity over the others in the system. It also provides information on the daily car usage against capacity.
DOI: 10.17632/86w2j472n7.1
title: Tray Optimization Problem

description: These datasets are about configuring surgical trays in operating rooms. For more description read the following article. https://www.tandfonline.com/doi/abs/10.1080/24725579.2019.1620383
DOI: 10.17632/gbf9w66876.1
title: Vehicle Occupancy Period Data

description: The vehicle occupancy period data offers information regarding the occupancy period for each parking slot resources, R(c) for selected car parks within the Frenchay campus. Parking inventory provides data regarding the entry and exit time of the i^th vehicles to and from the j^th carpark. This data was obtained from the UWE Estates and Facilities department. To comfortably model the distribution of parking slot resource occupancy period, data obtained from the parking inventory were fitted into several distributions. Table 1 attached summarises the outcome of these analyses while the spreadsheet contains the raw data and the probability distribution.
DOI: 10.6073/pasta/e41f217f56cfbe0cc50e462b97064bd1
title: Deschampsia biomass, soil microbes and endophyte root colonization for snowmelt and microbial innoculation transplant experiment in the Green Lakes Valley, 2015-2018

description: As organisms shift their geographic distributions in response to climate change, biotic interactions have emerged as an important factor driving the rate and success of range expansions. Plant-microbe interactions are an understudied but potentially important factor governing plant range shifts. We studied the distribution and function of microbes present in high-elevation unvegetated soils, areas that plants are colonizing as climate warms, snow melts earlier and the summer growing season lengthens. Using a manipulative snowpack and microbial inoculation transplant experiment, we tested the hypothesis that growing season length and microbial community composition interact to control plant elevational range shifts. We predicted that a lengthening growing season combined with dispersal to patches of soils with more mutualistic microbes and fewer pathogenic microbes would facilitate plant survival and growth in previously unvegetated areas. We identified negative effects on survival of the common alpine bunchgrass Deschampsia cespitosa in both short and long growing seasons, suggesting an optimal growing season length for plant survival in this system that balances time for growth with soil moisture levels. Importantly, growing season length and microbes interacted to affect plant survival and growth, such that microbial community composition increased in importance in suboptimal growing season lengths. Further, plants grown with microbes from unvegetated soils grew as well or better than plants grown with microbes from vegetated soils. These results suggest that the rate and spatial extent of plant colonization of unvegetated soils in mountainous areas experiencing climate change could depend on both growing season length and soil microbial community composition, with microbes potentially playing more important roles as growing seasons lengthen.
DOI: 10.15468/ravhe7
title: Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huber, John T., Read, Jennifer D., Triapitsyn, Serguei V. (2020): Illustrated key to genera and catalogue of Mymaridae (Hymenoptera) in America north of Mexico. Zootaxa 4773 (3): 1-411, DOI: https://doi.org/10.11646/zootaxa.4773.1.1
DOI: 10.5281/zenodo.3822190
title: Dataset for Male Eurasian jays flexibly alter their food sharing in line with partners' choices

description: This is the raw data for Exp. 1 and Exp. 2 from "Investigating the flexibility of male Eurasian jays' food-sharing behavior' by Rachel C Crosby, Edward W Legg, Katharina F. Brecht, Michael T Mendl, Ljerka Ostojic and Nicola S. Clayton in a machine-readable format. It was previously pre-printed under the title of "Male Eurasian jays flexibly alter their food sharing in line with partners’ choices".
description: MetaData and Code for the analyses reported in the manuscript for this dataset available at https://osf.io/n9rcd/
DOI: 10.5281/zenodo.3822191
title: SPEC RG Technical Report: A Review of Serverless Use Cases and their Characteristics - Dataset

description: <strong><em>PrettyDataset.xlsx</em></strong> Our data set of 89 serverless use cases and their mapping to 24 characteristics. In form of an Excel file to simplify manual inspection. Columns represent characteristics, rows represent use cases. <em><strong>Dataset.csv</strong></em> Raw version of our data set of 89 serverless use cases and their mapping to 24 characteristics as a CSV file for automated analysis. Columns represent characteristics, rows represent use cases. <em><strong>Initial Characterizations.csv</strong></em> Reviewer characterizations prior to the discussion and consolidation phase. Required for the calculation of the fleiss kappa score. <em><strong>CalculateKappa.py</strong></em> Python script for the calculation of the fleiss kappa score shown in the technical report. Requires Python 3.6. <em><strong>GenerateFigures.py</strong></em> Python script for the generation of all figures shown in the technical report. Requires Python 3.6.
DOI: 10.5281/zenodo.3822192
title: SPEC RG Technical Report: A Review of Serverless Use Cases and their Characteristics - Dataset

description: <strong><em>PrettyDataset.xlsx</em></strong> Our data set of 89 serverless use cases and their mapping to 24 characteristics. In form of an Excel file to simplify manual inspection. Columns represent characteristics, rows represent use cases. <em><strong>RawDataset.csv</strong></em> Raw version of our data set of 89 serverless use cases and their mapping to 24 characteristics as a CSV file for automated analysis. Columns represent characteristics, rows represent use cases. <em><strong>Initial Characterizations.csv</strong></em> Reviewer characterizations prior to the discussion and consolidation phase. Required for the calculation of the fleiss kappa score. <em><strong>CalculateKappa.py</strong></em> Python script for the calculation of the fleiss kappa score shown in the technical report. Requires Python 3.6. <em><strong>GenerateFigures.py</strong></em> Python script for the generation of all figures shown in the technical report. Requires Python 3.6.
DOI: 10.5281/zenodo.3822194
title: SPEC RG Technical Report: A Review of Serverless Use Cases and their Characteristics - Dataset

description: <strong><em>PrettyDataset.xlsx</em></strong> Our data set of 89 serverless use cases and their mapping to 24 characteristics. In form of an Excel file to simplify manual inspection. Columns represent characteristics, rows represent use cases. <em><strong>Dataset.csv</strong></em> Raw version of our data set of 89 serverless use cases and their mapping to 24 characteristics as a CSV file for automated analysis. Columns represent characteristics, rows represent use cases. <em><strong>Initial Characterizations.csv</strong></em> Reviewer characterizations prior to the discussion and consolidation phase. Required for the calculation of the fleiss kappa score. <em><strong>CalculateKappa.py</strong></em> Python script for the calculation of the fleiss kappa score shown in the technical report. Requires Python 3.6. <em><strong>GenerateFigures.py</strong></em> Python script for the generation of all figures shown in the technical report. Requires Python 3.6.
DOI: 10.15161/oar.it/23651
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5255/ukda-sn-851953
title: Food, families and work: taking a long view in understanding children and young people's diets, 2012-2013
DOI: 10.5281/zenodo.3821975
title: HORUS pressure dependent calibrations using the APACHE calibrator

description: Dataset for the pressure dependent calibrations of HORUS using the newly developed All Pressure Altitude Calibrator for HOx Experimentation (APACHE) chamber.
DOI: 10.5281/zenodo.3821976
title: HORUS pressure dependent calibrations using the APACHE calibrator

description: Dataset for the pressure dependent calibrations of HORUS using the newly developed All Pressure Altitude Calibrator for HOx Experimentation (APACHE) chamber.
DOI: 10.17638/datacat.liverpool.ac.uk/1076
title: Data files associated with "The impact of mercury selection and conjugative genetic elements on community structure and resistance gene transfer" by Hall, P�rn�nen, Harrison, Virta, and Brockhurst.