cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5wxv8c
title: Occurrence Download

description: A dataset containing 144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Viet Nam, Myanmar, Lao People’s Democratic Republic, India, Thailand, Singapore, Bangladesh, Cambodia, Nepal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus latifolius Roxb."
 ]
}

 The dataset includes 144 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021050-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15066441
title: Data for: Accelerating and enhancing thermodynamic simulations of electrochemical interfaces

description: This is the dataset for the publication "Accelerating and enhancing thermodynamic simulations of electrochemical interfaces", by X. Du, M. Liu, J. Peng, H. Chun, A. Hoffman, B. Yildiz, L. Li, M.Z. Bazant, and R. Gómez-Bombarelli. The repository contains the density-functional theory (DFT) data used to fine-tune the pre-trained neural network force fields (NFF), selected results from our Pt(111) and LaMnO3(001) Virtual Surface Site Relaxation-Monte Carlo (VSSR-MC) runs, and Jupyter notebooks used for Pourbaix analysis and plotting. To run the Jupyter notebooks and the commands below, you will need to install surface-sampling (tested up to commit 3c0c547 on pourbaix) and NeuralForceField (tested up to commit 2573e68 on vssr_pourbaix) from the Rafael Gómez-Bombarelli Group @ MIT, as well as our forked version of pymatgen (tested up to commit 5f1a155 on master).
DOI: 10.5281/zenodo.15066440
title: Data for: Accelerating and enhancing thermodynamic simulations of electrochemical interfaces

description: This is the dataset for the publication "Accelerating and enhancing thermodynamic simulations of electrochemical interfaces", by X. Du, M. Liu, J. Peng, H. Chun, A. Hoffman, B. Yildiz, L. Li, M.Z. Bazant, and R. Gómez-Bombarelli. The repository contains the density-functional theory (DFT) data used to fine-tune the pre-trained neural network force fields (NFF), selected results from our Pt(111) and LaMnO3(001) Virtual Surface Site Relaxation-Monte Carlo (VSSR-MC) runs, and Jupyter notebooks used for Pourbaix analysis and plotting. To run the Jupyter notebooks and the commands below, you will need to install surface-sampling (tested up to commit 3c0c547 on pourbaix) and NeuralForceField (tested up to commit 2573e68 on vssr_pourbaix) from the Rafael Gómez-Bombarelli Group @ MIT, as well as our forked version of pymatgen (tested up to commit 5f1a155 on master).
DOI: 10.15468/dl.p6t5e6
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Malaysia, Thailand, Indonesia, Singapore)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus manan Miq."
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021051-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7je9w
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.19.48_2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 453 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021054-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efcun9
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coccophagus capensis Compere, 1931",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 32 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021053-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28204532
title: Transcriptomic profiling after B-cell depletion reveals central and peripheral immune cell changes in multiple sclerosis

description: single cell RNAseq dataset from MS patients immune cells:PBMC: paired data from 18 patients pre/post anti-CD20 treatmentCSF: paired data from 5 patients pre/post anti-CD20 treatment, as well as 6 previously published healthy controls from Pappalardo et al.See <i>metadata_dictionary</i> file for details about the objects structures.Source code:<i>Ocrevus_manuscript.zip</i> is a clone of the GitHub repository
DOI: 10.15468/dl.b58x3a
title: Occurrence Download

description: A dataset containing 24076 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-74.94402 -3.20551,-74.92432 -3.19697,-74.8966 -3.20878,-74.87121 -3.20193,-74.86025 -3.20994,-74.85555 -3.22307,-74.8475 -3.22396,-74.84277 -3.21691,-74.81846 -3.23472,-74.81266 -3.2432,-74.82654 -3.25837,-74.83166 -3.28033,-74.8247 -3.28122,-74.80889 -3.304,-74.78806 -3.31001,-74.77873 -3.34116,-74.77287 -3.33612,-74.75811 -3.34216,-74.74662 -3.36019,-74.73152 -3.3687,-74.7342 -3.37546,-74.72227 -3.3914,-74.71969 -3.41075,-74.72643 -3.42857,-74.71158 -3.45408,-74.65962 -3.45356,-74.65974 -3.53139,-74.61058 -3.5608,-74.55149 -3.54631,-74.52895 -3.62557,-74.50854 -3.62026,-74.49539 -3.62829,-74.49171 -3.64345,-74.47869 -3.65032,-74.46947 -3.66647,-74.47633 -3.67205,-74.46691 -3.69658,-74.38259 -3.71904,-74.34832 -3.77173,-74.3005 -3.77596,-74.28619 -3.80567,-74.24078 -3.83983,-74.24062 -3.85233,-74.22268 -3.85539,-74.20695 -3.81803,-74.16771 -3.79869,-74.14442 -3.80428,-74.11268 -3.75616,-74.05753 -3.70749,-74.05222 -3.69857,-74.06619 -3.68661,-74.064 -3.67637,-74.01177 -3.65935,-74.00717 -3.64738,-73.99783 -3.64378,-73.97931 -3.60767,-73.97435 -3.57703,-73.98391 -3.56096,-73.96661 -3.54161,-73.93838 -3.5314,-73.91719 -3.5123,-73.92075 -3.49195,-73.94056 -3.46841,-73.97978 -3.46016,-74.03465 -3.41982,-74.03461 -3.382,-74.04117 -3.36774,-74.0266 -3.35368,-73.97953 -3.33016,-73.98498 -3.32383,-73.9039 -3.27737,-73.88876 -3.29095,-73.85794 -3.24736,-73.8324 -3.23438,-73.85319 -3.20562,-73.86867 -3.20571,-73.88949 -3.17901,-73.93854 -3.14932,-73.95357 -3.11522,-73.9789 -3.11525,-74.00104 -3.07007,-74.04313 -3.04457,-74.09348 -3.04968,-74.13044 -2.9797,-74.14904 -2.96177,-74.20312 -2.93736,-74.2691 -2.93871,-74.28713 -2.91285,-74.43347 -2.76543,-74.51952 -2.78455,-74.54994 -2.7539,-74.5631 -2.75396,-74.56309 -2.75901,-74.58413 -2.76523,-74.63348 -2.76038,-74.65308 -2.72002,-74.70578 -2.69562,-74.71078 -2.66604,-74.74313 -2.64482,-74.86271 -2.59535,-74.87858 -2.55195,-74.92107 -2.52768,-74.94934 -2.52759,-74.93872 -2.60395,-74.95992 -2.62368,-74.97629 -2.66296,-75.00765 -2.67981,-75.01169 -2.6928,-75.01702 -2.73763,-75.00755 -2.76322,-75.03566 -2.81707,-75.03635 -2.87587,-75.05953 -2.96265,-75.0622 -3.00797,-75.06899 -3.01259,-75.06564 -3.02078,-75.05707 -3.01449,-75.03823 -3.02354,-75.0259 -3.0635,-75.01375 -3.07703,-75.02053 -3.09329,-75.01051 -3.11229,-75.01676 -3.13442,-75.00015 -3.16456,-75.00055 -3.18618,-74.9731 -3.19114,-74.94402 -3.20551),(-74.4927 -3.42724,-74.60186 -3.49322,-74.6912 -3.22254,-74.63125 -3.1863,-74.4927 -3.42724)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 24076 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021056-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7vefk
title: Occurrence Download

description: A dataset containing 621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Philippines, Bangladesh, Viet Nam, Myanmar, Indonesia, Lao People’s Democratic Republic, India, Thailand, Papua New Guinea, Singapore, Malaysia, China, Chinese Taipei, Cambodia, Hong Kong)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus melanochaetes (Blume) Miq."
 ]
}

 The dataset includes 621 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021057-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zedtts
title: Occurrence Download

description: A dataset containing 182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Panama",
 "DatasetKey is one of (MSB Mammal Collection (Arctos), UF Florida Museum of Natural History Mammals, KUBI Mammalogy Collection, University of Michigan Museum of Zoology, Division of Mammals, Field Museum of Natural History (Zoology) Mammal Collection, Modelado de la distribución geográfica de mamíferos endémicos y en riesgo de conservación de Oaxaca, Museum of Comparative Zoology, Harvard University, NMNH Extant Specimen Records (USNM, US), Observation.org, Nature data from around the World, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Potos flavus (Schreber, 1774)"
 ]
}

 The dataset includes 182 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021058-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.turqfu
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.19.43_2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 45 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021059-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5j8fd
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Philippines, Malaysia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus moseleyanus Becc."
 ]
}

 The dataset includes 38 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021060-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r64zt6
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is BirdMap Data - GPS tracking of Storks, Cranes and birds of prey, breeding in Northern and Eastern Europe",
 "Geometry POLYGON((5.64452 35.166,11.33482 35.166,11.33482 37.70712,5.64452 37.70712,5.64452 35.166))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2017-2017"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021052-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15066518
title: PHILHARMONIC Results for P. damicornis, C. goreaui, and D. melanogaster

description: PHILHARMONIC is a novel computational approach that couples deep learning de novo network inference with robust unsupervised spectral clustering algorithms to uncover functional relationships and high-level organization in non-model organisms. Our clustering approach allows us to de-noise the predicted network, producing highly informative functional modules.

We apply PHILHARMONIC to predict clusters with significant functional coherence in the reef-building coral P. damicornis and its algal symbiont C. goreaui, and the well-annotated fruit fly D. melanogaster.
DOI: 10.5281/zenodo.15066467
title: Taxonomy and Molecular Phylogeny of Urocleidoides spp. (Monophistocotyla: Dactylogyridae): Four new species and Cophylogenetic  Patterns in  a Clade of Species Parasitizing Characiformes Hosts
DOI: 10.5281/zenodo.15066499
title: Taxonomy and Molecular Phylogeny of Urocleidoides spp. (Monophistocotyla: Dactylogyridae): Four new species and Cophylogenetic  Patterns in  a Clade of Species Parasitizing Characiformes Hosts
title: vs.
DOI: 10.5281/zenodo.15031105
title: Replication package
DOI: 10.5281/zenodo.15042934
title: Replication package
DOI: 10.5281/zenodo.15048694
title: Replication package
DOI: 10.5281/zenodo.15066529
title: Beyond Adoption: Examining the Evolution and Impact of Code of Conduct on Open Source Communities

description: Replication package.

File structure:



Readme.md

Supplementary_material.pdf: Supplementary Figures for RQ1 & RQ2

RQ1:



RQ1_1_CoC_repos.csv: Complete list of repositories with CoC

RQ1_2_GPT_coding.md: Prompt for coding CoC update types with GPT

RQ1_2_clustering_results.csv: RQ1.2 output clustering results data



RQ2



RQ2_1_DiD.ipynb: Notebook for DiD analysis to understand the impact of CoC adoption on community engagement

RQ2_1_DiD_data.csv: Input data for DiD analysis, consists of control and treatment group data for different ΔT values (1 months, 3 months, 6 months, 9 months, 12 months)

RQ2_1_DiD_results.csv: Output results of DiD analysis

RQ2_2_CoC_attributes.ipynb: Notebook for analysis to investigate the relationship between CoC Update characteristics and community engagement

RQ2_2_CoC_attributes_data.csv: Input data for CoC Update analysis

RQ2_2_CoC_attributes_results.csv: Output results of CoC Update analysis
DOI: 10.15468/dl.x8699z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coccobius flaviventris (Howard, 1910)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021061-250310093411724/datasets/export for details.
DOI: 10.15468/dl.ydnwgk
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Malaysia, Indonesia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus optimus Becc."
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021062-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bzf62
title: Occurrence Download

description: A dataset containing 2559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Uropsalis segmentata (Cassin, 1849)"
 ]
}

 The dataset includes 2559 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021064-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hmpnkg
title: Occurrence Download

description: A dataset containing 1939 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Nyctibius maculosus Ridgway, 1912"
 ]
}

 The dataset includes 1939 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021065-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mk6n83
title: Occurrence Download

description: A dataset containing 1609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is MEX.19.49_2",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 1609 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021066-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrt3wq
title: Occurrence Download

description: A dataset containing 601 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cypseloides rothschildi J.T.Zimmer, 1945"
 ]
}

 The dataset includes 601 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021067-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zttwmh
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Material sample, Human Observation, Material citation, Living Specimen, Specimen, Fossil, Occurrence evidence)",
 "GadmGid is USA.39_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Perimyotis subflavus (F.Cuvier, 1832)"
 ]
}

 The dataset includes 93 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021068-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fy8ven
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Philippines, Indonesia, Thailand, Singapore, Malaysia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus ornatus Blume"
 ]
}

 The dataset includes 117 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021069-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3erwt3
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sri Lanka",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus ovoideus Thwaites ex Trimen"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021070-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntjren
title: Occurrence Download

description: A dataset containing 6576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Abeillia abeillei (R.Lesson & Delattre, 1839)"
 ]
}

 The dataset includes 6576 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021071-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fy4p9h
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aglaeactis aliciae Salvin, 1896"
 ]
}

 The dataset includes 192 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021074-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fjdrf
title: Occurrence Download

description: A dataset containing 10496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cnephasia asseclana (Denis & Schiffermüller), 1775",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10496 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021073-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnx5mf
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus pogonacanthus Becc. ex H.J.P.Winkl."
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021076-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxt5eq
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is BirdMap Data - GPS tracking of Storks, Cranes and birds of prey, breeding in Northern and Eastern Europe",
 "Geometry POLYGON((5.64452 35.166,11.33482 35.166,11.33482 37.70712,5.64452 37.70712,5.64452 35.166))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2018-2018"
 ]
}

 The dataset's 3 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021063-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxam36
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Philippines, Indonesia, Thailand, Singapore, Malaysia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calamus scipionum Lour."
 ]
}

 The dataset includes 44 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021077-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.