cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bqavxz
title: Occurrence Download

description: A dataset containing 19152695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 2089ce96-4fb5-4a20-999c-3ccf45a27a4d",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 19152695 records from 657 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040436-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57967/hf/7015
title: Lao_NangSangkhan_Dataset_V0.1
DOI: 10.57967/hf/7021
title: Lao_NangSangkhan_Dataset_V0.1
DOI: 10.15468/dl.4awhv2
title: Occurrence Download

description: A dataset containing 47538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pinaceae, Cupressaceae, Taxaceae, Podocarpaceae, Fagaceae, Betulaceae, Juglandaceae, Prunus, Malus, Crataegus, Sorbus, Amelanchier, Ulmaceae, Moraceae, Rhamnaceae, Sapindaceae, Simaroubaceae, Anacardiaceae, Malvaceae, Magnoliaceae, Lauraceae, Salicaceae, Platanaceae, Oleaceae, Bignoniaceae, Cornaceae, Hamamelidaceae, Oxydendrum, Arbutus, Robinia, Cercis, Gleditsia, Gymnocladus, Cladrastis, Albizia, Rutaceae, Aquifoliaceae, Nyssaceae, Araliaceae, Caprifoliaceae, Tamaricaceae, Elaeagnaceae)",
 {
 "or" : [
 "Geometry POLYGON ((-81.22694891682785 35.86841431426672, -81.26927624630405 35.9143974923428, -81.26886026146343 35.8608035372427, -81.22694891682785 35.86841431426672))",
 "Geometry POLYGON ((-80.46300533656496 36.33407514376557, -80.46057153583125 36.35201444366319, -80.49789552329362 36.344761601784896, -80.46300533656496 36.33407514376557))",
 "Geometry POLYGON ((-80.37192341237973 36.39218926327551, -80.39019127880583 36.34600532349389, -80.22040493265855 36.36843720713676, -80.37192341237973 36.39218926327551))",
 "Geometry POLYGON ((-81.08074614476632 36.92524272061821, -81.13421755254299 36.86192516349297, -81.03724194701009 36.87151161775477, -81.08074614476632 36.92524272061821))",
 "Geometry POLYGON ((-79.92134467001112 37.20396409658326, -84.08443252250866 35.585055891404856, -84.75254943925593 34.09977191255748, -81.73760031671546 35.412350078682906, -79.92134467001112 37.20396409658326))",
 "Geometry POLYGON ((-79.19506666243673 37.62166325411621, -79.22601435237057 37.528350347335156, -79.09252231326401 37.6031661858806, -79.19506666243673 37.62166325411621))",
 "Geometry POLYGON ((-78.67693487163103 37.99789752496248, -78.82899103384348 37.90724763235567, -78.76498503097132 37.8296135328709, -78.67693487163103 37.99789752496248))",
 "Geometry POLYGON ((-77.53604295998488 39.96624079163164, -79.91041650745217 37.32174973886062, -78.77682083629442 37.77996921821699, -77.53604295998488 39.96624079163164))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "Year is greater than or equal to 1980",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 47538 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040429-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t82efd
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.6188 20.99913, -106.4688 20.99913, -106.4688 21.14913, -106.6188 21.14913, -106.6188 20.99913))"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040445-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xfgud
title: Occurrence Download

description: A dataset listing the 65 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((176.58414 -37.94535,176.61634 -37.93889,176.63804 -37.92552,176.65105 -37.90883,176.65414 -37.8807,176.64975 -37.86948,176.63393 -37.85334,176.60844 -37.84295,176.57708 -37.83869,176.5576 -37.84088,176.53384 -37.8488,176.5139 -37.86961,176.50953 -37.88991,176.51444 -37.91334,176.5248 -37.92549,176.5511 -37.93976,176.58414 -37.94535))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Arachnida, Onychophora, Diplopoda, Insecta, Rhytididae, Athoracophoridae, Chilopoda)"
 ]
}

 The dataset's 65 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040439-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4g7wp
title: Occurrence Download

description: A dataset containing 35967 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diplotaxis erucoides",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35967 records from 383 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040446-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7caqgs
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.4688 20.99913, -106.3188 20.99913, -106.3188 21.14913, -106.4688 21.14913, -106.4688 20.99913))"
 ]
}

 The dataset includes 53 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040447-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.36227.77606
title: Statistik dependen dan independen
DOI: 10.5281/zenodo.17636366
title: Processed RNA-seq data associated with the manuscript by Gong et al., Frontiers in Microbiology, 2025

description: This dataset contains the processed RNA-seq data supporting the manuscript:

"Gong et al., Frontiers in Microbiology (2025)."

According to the sequencing company’s data retention policy, raw FASTQ files are stored for only 6 months and were deleted before the data deposition stage. Therefore, all processed data directly exported from the official RNA-seq analysis pipeline are provided.

Included in this dataset:

• raw gene count matrix (featureCounts output)• sample metadata (experimental groups and conditions)• differential expression tables for all comparisons• quality control summaries (mapping statistics, sequencing metrics)

These processed data are sufficient to reproduce all major analyses presented in the manuscript, including normalization, differential expression analysis, PCA, and downstream interpretation.

No restrictions apply to data reuse. Please contact the corresponding author for questions regarding the dataset.
DOI: 10.5281/zenodo.17636367
title: Processed RNA-seq data associated with the manuscript by Gong et al., Frontiers in Microbiology, 2025

description: This dataset contains the processed RNA-seq data supporting the manuscript:

"Gong et al., Frontiers in Microbiology (2025)."

According to the sequencing company’s data retention policy, raw FASTQ files are stored for only 6 months and were deleted before the data deposition stage. Therefore, all processed data directly exported from the official RNA-seq analysis pipeline are provided.

Included in this dataset:

• raw gene count matrix (featureCounts output)• sample metadata (experimental groups and conditions)• differential expression tables for all comparisons• quality control summaries (mapping statistics, sequencing metrics)

These processed data are sufficient to reproduce all major analyses presented in the manuscript, including normalization, differential expression analysis, PCA, and downstream interpretation.

No restrictions apply to data reuse. Please contact the corresponding author for questions regarding the dataset.
DOI: 10.15468/dl.tbnkgd
title: Occurrence Download

description: A dataset containing 2862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dodonaea bursariifolia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2862 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040448-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7ubtz
title: Occurrence Download

description: A dataset containing 73610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippoglossoides elassodon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73610 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040410-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7e746
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.3188 20.99913, -106.1688 20.99913, -106.1688 21.14913, -106.3188 21.14913, -106.3188 20.99913))"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040449-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ae25t
title: Occurrence Download

description: A dataset containing 589 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Presbytis melalophos"
 ]
}

 The dataset includes 589 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040450-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8knae
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dodonaea coriacea",
 "HasCoordinate is true"
 ]
}

 The dataset includes 517 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040451-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2y6c3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippoglossoides platessoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1800",
 "Year is less than or equal to 1809"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040452-251025141854904/datasets/export for details.
DOI: 10.15468/dl.vrsn98
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.1688 20.99913, -106.0188 20.99913, -106.0188 21.14913, -106.1688 21.14913, -106.1688 20.99913))"
 ]
}

 The dataset includes 25 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040453-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2a4wj
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "GadmGid is one of (CHN.10_1, CHN.27_1, CHN.2_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Acanthis flammea",
 "Year 2004-2021"
 ]
}

 The dataset includes 95 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040454-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62pcj4
title: Occurrence Download

description: A dataset containing 1594 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dodonaea stenozyga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1594 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040455-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.za53xe
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.0188 20.99913, -105.8688 20.99913, -105.8688 21.14913, -106.0188 21.14913, -106.0188 20.99913))"
 ]
}

 The dataset includes 127 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040456-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zp53mr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippoglossoides platessoides",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1810",
 "Year is less than or equal to 1819"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040457-251025141854904/datasets/export for details.
DOI: 10.15468/dl.petfsb
title: Occurrence Download

description: A dataset containing 1107474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sus scrofa"
 ]
}

 The dataset includes 1107474 records from 3238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040379-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dby3pa
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inga obtusata Spruce ex Benth."
 ]
}

 The dataset includes 169 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000668-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5jf7r
title: Occurrence Download

description: A dataset containing 1925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "StateProvince is Texas",
 "TaxonKey is Cynomys ludovicianus (Ord, 1815)"
 ]
}

 The dataset includes 1925 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000671-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15271709
title: Molecular networking guided by culture media variation for the production of  metabolites and bioactivity-based fractionation in Vibrio diabolicus (Ili)

description: The present document aims to contains the MS1 data in negative ionization from a UPLC-MS/MS of secondary metabolites present in Vibrio diabolicus was subjected to different stresses due to the composition of nitrogen and phosphorus in 5 different culture media, which were then fractionated into water and methanol with the help of a C18 column. The statistical analysis is available on the Github repository (IKIAM-NPLab/Vibrio-diabolicus-Ili-: Culture media variation for the production of metabolites and bioactivity-based fractionation in Vibrio diabolicus (Ili)).
DOI: 10.5281/zenodo.15271710
title: Molecular networking guided by culture media variation for the production of  metabolites and bioactivity-based fractionation in Vibrio diabolicus (Ili)

description: The present document aims to contains the MS1 data in negative ionization from a UPLC-MS/MS of secondary metabolites present in Vibrio diabolicus was subjected to different stresses due to the composition of nitrogen and phosphorus in 5 different culture media, which were then fractionated into water and methanol with the help of a C18 column. The statistical analysis is available on the Github repository (IKIAM-NPLab/Vibrio-diabolicus-Ili-: Culture media variation for the production of metabolites and bioactivity-based fractionation in Vibrio diabolicus (Ili)).
DOI: 10.15468/dl.xrfbj7
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041467-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qaxstu
title: Occurrence Download

description: A dataset containing 1557155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1557155 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041448-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5kdqwr
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 93 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041470-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3e4gxx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041471-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68jkzu
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fallopia convolvulus",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 219 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041472-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14787107
title: Water management and crop rotation influence aquatic biodiversity in rice paddies

description: Irrigation timing and crop rotation strongly influence aquatic biodiversity of rice paddies. Species with seasonal reproduction or soil-dormant stages are especially sensitive to hydroperiod shifts. However, the ecological consequences of delayed transplanting and double-cropping, increasingly adopted under climate and economic pressures, remain underexplored. Aquatic animal communities were investigated across 39 paddy fields in Saitama Prefecture, Japan, under three regimes differing in transplanting timing and crop rotation: early transplanting, normal season, and wheat–rice double-cropping. Each paddy was surveyed three times during the growing season. Generalized linear mixed models, permutational multivariate analysis of variance, and local contributions to beta diversity (LCBD) metrics were used to assess community composition, richness, and abundance. 




Results showed that early transplanting fields favored amphibians, loaches, and drought-tolerant invertebrates, whereas double-cropping paddies harbored prey-rich communities with high densities of chironomid larvae and predatory insects. These regimes also had significantly higher LCBD values, indicating greater contributions to landscape-scale beta diversity. Indicator analysis showed reproductive timing and drought tolerance explained species–regime associations. 




These findings highlight how agricultural practices, albeit confounded with regional and interannual variation, function as ecological filters shaping aquatic biodiversity at local and regional scales. As climate change drives shifts in transplanting schedules, water-management strategies that preserve early-season aquatic habitats (e.g., maintaining early flooded paddies or providing alternative shallow water habitats) are critical for sustaining biodiversity and ecosystem services in rice-based agroecosystems across temperate and subtropical Asia.
DOI: 10.5281/zenodo.14787108
title: Water management and crop rotation influence aquatic biodiversity in rice paddies

description: Irrigation timing and crop rotation strongly influence aquatic biodiversity of rice paddies. Species with seasonal reproduction or soil-dormant stages are especially sensitive to hydroperiod shifts. However, the ecological consequences of delayed transplanting and double-cropping, increasingly adopted under climate and economic pressures, remain underexplored. Aquatic animal communities were investigated across 39 paddy fields in Saitama Prefecture, Japan, under three regimes differing in transplanting timing and crop rotation: early transplanting, normal season, and wheat–rice double-cropping. Each paddy was surveyed three times during the growing season. Generalized linear mixed models, permutational multivariate analysis of variance, and local contributions to beta diversity (LCBD) metrics were used to assess community composition, richness, and abundance. 




Results showed that early transplanting fields favored amphibians, loaches, and drought-tolerant invertebrates, whereas double-cropping paddies harbored prey-rich communities with high densities of chironomid larvae and predatory insects. These regimes also had significantly higher LCBD values, indicating greater contributions to landscape-scale beta diversity. Indicator analysis showed reproductive timing and drought tolerance explained species–regime associations. 




These findings highlight how agricultural practices, albeit confounded with regional and interannual variation, function as ecological filters shaping aquatic biodiversity at local and regional scales. As climate change drives shifts in transplanting schedules, water-management strategies that preserve early-season aquatic habitats (e.g., maintaining early flooded paddies or providing alternative shallow water habitats) are critical for sustaining biodiversity and ecosystem services in rice-based agroecosystems across temperate and subtropical Asia.
DOI: 10.17909/zq0c-8t87
title: GLIMPSE DDT Spectra

description: GLIMPSE-D Spectra data
DOI: 10.57903/uj/pww9hf
title: GLR channels are involved in the mechanism of chloroplast avoidance response in Lemna trisulca - raw data

description: Results obtained during the research. Data include numerical results and which constitute a data set for publication: Krzeszowiec W and Gabryś; GLR channels are involved in the mechanism of chloroplast avoidance response in Lemna trisulca