cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24100101.v1
title: Supplementary Material for: Thyroid incidentalomas; incidence and oncological implication in patients with esophageal cancer

description: Thyroid incidentalomas are often encountered during imaging performed for the workup of esophageal cancer. Their oncological significance is unknown. This study aimed to establish incidence and etiology of thyroid incidentalomas found during the diagnostic workup of esophageal cancer. All esophageal cancer patients referred to or diagnosed in the Amsterdam UMC between January 2012 and December 2016 were included. Radiology and multidisciplinary team meeting reports were reviewed for presence of thyroid incidentalomas. When present, the 18FDG-PET/CT or CT was reassessed by a radiologist. Primary outcome was the incidence and etiology of thyroid incidentalomas. In total, 1,110 esophageal cancer patients were included. Median age was 66 years, most were male (77.2%) and had an adenocarcinoma (69.4%). For 115 patients (10.4%) a thyroid incidentaloma was reported. Two thyroidal lesions proved malignant. One esophageal cancer metastasis (0.9%) and one was a primary thyroid carcinoma (0.9%). Only the primary thyroid carcinoma resulted in treatment alteration. The other malignant thyroid incidentaloma was in the context of disseminated esophageal disease and ineligible for curative treatment. In this study, thyroid incidentalomas were only very rarely oncologically significant. Further etiological examination should only be considered in accordance with the according to the TI-RADS classification system and when clinical consequences are to be expected.
DOI: 10.6084/m9.figshare.19425524.v1
title: Towards bridging the gap between Knowledge Graphs and Chatbots

description: Supplementary data for the paper "Towards bridging the gap between Knowledge Graphs and Chatbots" at the 22nd International Conference on Web Engineering (ICWE 2022).<br>Chatbots are nowadays being applied widely in different life domains. One major reason for this trend is the mature development process that is supported by large companies and sophisticated conversational platforms. However, the required development steps are mostly done manually while transforming existing knowledge bases into interaction configurations, s.t., algorithms integrated into the conversational platforms are enabled to learn the intended interaction patterns. However, already existing domain knowledge may get vanished while transforming a structured knowledge base into a "flat" text representation without references backwards. In this paper, we aim for an automatic process dedicated to generating interaction configurations for a conversational platform (Google Dialogflow) from an existing domain-specific knowledge base.Our ultimate goal is to generate chatbot configurations automatically, s.t., the quality and efficiency are increased.
DOI: 10.6084/m9.figshare.27637056.v1
title: Supplementary Material for: Psychometric Evaluation of the Dutch version of the Substance Use Recovery Evaluator (SURE-NL)

description: Introduction
Patient-Reported Outcome Measures (PROMs) are an important source of information that allow for a patient-centered assessment. Outcome measurement of substance use disorder (SUD) treatment traditionally focuses on drug use and deficits in functioning, overlooking other aspects of the personal and dynamic process of recovery. The Substance Use Recovery Evaluator (SURE) is a PROM developed with service user input to monitor the recovery journey and assess treatment outcomes in people with SUD.
The objective of this study was to examine the validity and reliability of the Dutch translation of the SURE, the SURE-NL, for measuring indicators of recovery in Dutch-speaking patients with SUD.

Methods
The original SURE questionnaire was translated from English to Dutch using forward-backward translation. A total of N=171 participants were recruited as part of a naturalistic multicenter study in inpatient (N=149) and outpatient (N=22) SUD treatment centers. We examined the factorial structure, reliability, and concurrent and discriminant validity of the SURE-NL.

Results
The original 5-factor structure of the SURE showed acceptable fit for the SURE-NL, and internal consistencies of the subscales ranged from .61 to .76 and internal consistency of the total score was .83. Concurrent validity was confirmed through positive correlations of the SURE-NL total and subscale scores with the WHOQoL-BREF subscales, but correlations varied depending on subscale and treatment setting, with higher correlations for the outpatient compared to the inpatient subgroup. Discriminant validity was confirmed through low, mostly non-significant correlations between the SURE-NL and the DASS-21. 

Conclusions
Although the SURE was originally designed for outpatient settings, our findings in a predominantly inpatient sample indicate that the SURE-NL is suitable for assessing personal recovery and recovery capital in Dutch-speaking Belgian patients with SUD. However, subscales should be used and interpreted with caution. Further research is needed with larger Dutch-speaking outpatient samples and the development of a tailored SURE for inpatient settings should be considered.
DOI: 10.6084/m9.figshare.11635995.v1
title: Supplementary Material for: The Bidirectional Association between Inflammatory Bowel Disease and Atopic Dermatitis: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Previous investigations have suggested a significant association between inflammatory bowel disease (IBD) and atopic dermatitis (AD). Yet, outcomes published remain inconsistent. <b><i>Objective:</i></b> To explore the association between IBD and AD by a systematic review and meta-analysis. <b><i>Methods:</i></b> A comprehensive search of studies published from March 1, 1968, to July 26, 2019, was performed in electronic databases as follows: PubMed, Embase, Cochrane Library, and Web of Science. Methodological quality was assessed based on the Newcastle-Ottawa Scale. Data analysis was conducted using R version 3.6.1 (meta package version 4.9-7). <b><i>Results:</i></b> A total of 14 studies were eligible for exploring the association between IBD and AD. Statistically significant differences were found on the risk of AD comorbidity among patients with IBD (risk ratio [RR] 1.83, 95% CI 1.39–2.40), Crohn’s disease (CD; RR 2.06, 95% CI 1.61–2.64), and ulcerative colitis (UC; RR 1.66, 95% CI 1.23–2.24). Compared with non-AD subjects, patients with AD were 48% (<i>p</i> = 0.019), 44% (<i>p</i> = 0.002), and 38% (<i>p</i> = 0.000) more likely to exhibit IBD, CD as well as UC, respectively. <b><i>Discussion:</i></b> Our evidence supported a significant bidirectional association between IBD and AD. Future prospective studies are warranted to explore underlying mechanisms linking them.
DOI: 10.6084/m9.figshare.28784936.v2
title: Table 2

description: <b>Top countries in the world by </b><b>Corruption Perceptions Index</b><b>, 2024</b>
DOI: 10.17894/ucph.a852a077-7b9b-4f4c-9a6d-1a0f3c79bd2e
title: Data for Repeated Interaction Scheme for the Quantum Simulation of Non-Markovian Electron Transfer Dynamics

description: Simulation data (.csv files) with time series of expectation values for each Lindblad or repeated interaction simulation. File headers contain simulation parameters.

Postprocessing data (.csv files) and scripts (.ipynb files) for calculating rates and RHP measures from simulation data.

Plotting scripts (.ipynb files) for generating plots.

Simulation scripts (.py files) from https://github.com/mteynor/ri4et/releases/tag/v0.1.0
DOI: 10.6084/m9.figshare.1451343.v1
title: IEEE results

description: list of studies derived from IEEE
DOI: 10.6084/m9.figshare.21801091.v1
title: Processed CCLE gene expression 21Q3 data

description: Processed CCLE gene expression 21Q3 data
DOI: 10.6084/m9.figshare.22574059.v1
title: Supplementary Material for: Work Experiences of the Interdisciplinary Dialysis Workforce in the United States: A Cross-Sectional Survey

description: Introduction: Suboptimal dialysis care may be in part due to staff issues such as job dissatisfaction, burnout, work overload, high staff turnover, and inconsistent training. Here, we leveraged data collected in a recent national survey to provide an initial, comprehensive description of current work experiences of U.S. dialysis care providers. Methods: We conducted a cross-sectional survey of 1240 active U.S. dialysis clinic staff members (physicians, advanced practice providers, nurse managers/clinic coordinators, nurses, social workers, dietitians, and patient care technicians), who were recruited via emails to society membership lists. Respondents were asked about a wide variety of work experiences, including job satisfaction, professional fulfillment and burnout (Stanford Professional Fulfillment Index), work culture, experiences of hostility and violence, and self-reported medical errors. Responses were summarized overall and compared by clinic role. Results: Most of the survey respondents, representing all 50 U.S. states, were aged 35-49 (58.3%) or ≥50 (23.5%), female (60.7%), and white (59.8%; 23.1% Black and 10.0% Asian); 82.1% had been in their current role for at least 1 year. Most U.S. dialysis staff responding to our survey reported being generally satisfied with their jobs (mean rating of 7.9 on 0-10 scale), but only 54.4% met criteria for professional fulfillment, and 32.8% met criteria for burnout, driven by high scores in the work exhaustion domain. Related issues, including high workloads, lack of respect (including experiences of violence and hostility), lack of autonomy, and suboptimal patient environments (in terms of both safety and patient-centeredness), were commonly reported among dialysis care providers, although their prevalence often differed by provider type. Conclusion: Our results suggest that the dialysis workforce may be at a critical point. Preventing further staff burn out, which could lead to even greater staffing shortages and worse working conditions among those who continue to provide dialysis care, is essential.
DOI: 10.6084/m9.figshare.14610732.v3
title: Origins of the Instability of Non-precious HER Catalysts at Open Circuit Potential

description: This dataset contains the SCAN-calculated entries (structures and energies) used for the generation of Mo-S, Mo-P, Co-P, Pt and Ni-Mo Pourbaix diagrams
DOI: 10.6084/m9.figshare.9766853.v1
title: Supplementary Material for: Cutaneous T-Cell Acute Lymphoblastic Leukemia and the Expression Pattern of Terminal Deoxynucleotidyl Transferase Immunostaining in Mycosis Fungoides and Spongiotic Dermatitis

description: <b><i>Background/Aims:</i></b> T-cell acute lymphoblastic leukemia (T-ALL) is an uncommon, aggressive malignancy that rarely presents in the skin and is generally not considered as part of the differential diagnosis by dermatologists and dermatopathologists. We describe an unusual case of T-ALL presenting with folliculocentric, erythematous papules on the face, histologically resembling mycosis fungoides (MF). Immunostaining for terminal deoxynucleotidyl transferase (TdT) was positive in tumor cells, supporting the diagnosis of cutaneous involvement by T-ALL. TdT is a nuclear enzyme expressed by immature lymphoid malignancies, but the expression pattern of this marker is not well characterized in the skin. We aimed to assess TdT staining in skin biopsies with similar-appearing lymphocytic infiltrates. <b><i>Methods:</i></b> We evaluated the immunostaining profile of TdT in a cohort of 23 patients, including 13 cases of MF and 10 cases of spongiotic dermatitis. <b><i>Results:</i></b> The lymphocytes in the MF and spongiotic dermatitis cases lacked nuclear staining for TdT. Nonspecific, granular, cytoplasmic staining was observed in a small number of background cells. <b><i>Conclusions:</i></b> TdT may assist dermatopathologists in discriminating malignant infiltrates of T-ALL from other conditions.
DOI: 10.6084/m9.figshare.5840832.v1
title: Supplementary Material for: Responsiveness of Infrapatellar Fat Pad Volume Change to Body Weight Loss or Gain: Data from the Osteoarthritis Initiative

description: Obesity is a potent risk factor for knee osteoarthritis (OA) that is driven by mechanical and potentially endocrine mechanisms, and it affects women more frequently than men. The infrapatellar fat pat (IPFP) represents a potential link between obesity, intra-articular inflammation and structural pathology. Here we investigate whether the IPFP is responsive to body weight loss/gain in women and how its responsiveness to weight change compares to that of subcutaneous fat (SCF) of the thigh. All female participants of the Osteoarthritis Initiative (OAI) with ≥10% weight loss/gain between baseline and a 2-year follow-up were included. Within-subject changes in IPFP volume and SCF cross-sectional areas (CSA) were determined from 3-T magnetic resonance imaging. Linear regression was used to assess the association between change in weight, IPFP volume, and SCF CSA. In the 38 participants with ≥10% weight loss over 2 years (age 59.3 ± 9.1 years, mean loss = 15.9%), there was a significant reduction in IPFP volume (-2.2%, <i>p</i> = 0.02) as well as in SCF CSA (-22%, <i>p</i> &lt; 0.001). In the 34 participants with ≥10% gain (age 61.5 ± 8.7 years, mean gain = 15.9%), there was a significant increase in SCF CSA (+26%, <i>p</i> &lt; 0.001) but not in IPFP volume (0.2%, <i>p</i> = 0.87). Weight change was significantly associated with SCF CSA change (<i>r</i> = 0.76, <i>p</i> &lt; 0.001) but not with IPFP volume change (<i>r</i> = 0.11, <i>p</i> = 0.37). In this first longitudinal, observational study investigating the responsiveness of IPFP and SCF to weight change, IPFP morphology was found responsive to weight loss but not to weight gain. Overall, the responsiveness of the IPFP was substantially less than that of the SCF.
DOI: 10.6084/m9.figshare.23896524.v1
title: TH-HIES Transporation constraints table data - .docx

description: Optimal transportation data for my planned work.
DOI: 10.6084/m9.figshare.20089817.v1
title: Microbial datasets from the CtiyScapeLabs sites Berlin

description: These are the data used in the paper titled "<strong>Soil microbial communities shift along an urban gradient in Berlin, Germany</strong>" Presented are the outputs of the DADA2 pipeline we used; for each organism group studied (Fungi, Glomeromycota, Bacteria and Cercozoa), there is a table of OTU sequences, a table of the taxonomic assignments attributed to these sequences, and a table showing OTU abundance across sites. Illumina sequencing was performed at BeGenDiv, partially funded by the BMBF (Förderkennzeichen 033W034A).
DOI: 10.6084/m9.figshare.21393192.v1
title: ANGRA: A plant trait database for grasslands and wooded grasslands of Anatolia

description: ANGRA is a plant trait database for Anatolian grasslands and wooded grasslands. The database is based on the Turkish flora book series of P. H. Davis (1965-1985) and includes records of 24 plant traits from 3516 plant taxa.
DOI: 10.6084/m9.figshare.3523349.v1
title: Appendix B. A table showing published cases of plant–herbivore interactions used in the meta-analysis to assess the performance of phytophagous insects on experimentally water-stressed host plants.

description: A table showing published cases of plant–herbivore interactions used in the meta-analysis to assess the performance of phytophagous insects on experimentally water-stressed host plants.
DOI: 10.15468/dl.62udua
title: Occurrence Download

description: A dataset containing 986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Linnaea borealis L.",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 986 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009582-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25451/flinders.16881940.v1
title: Motion Picture Producers and Distributors of America Incorporated database

description: The MPPDA Digital Archives consists of a database of the extant records of the General Correspondence files of the Motion Picture Producers and Distributors of America, Inc., <b>covering the period from 1922 to 1939</b>. Established in 1922, the MPPDA was the trade association for the motion picture industry, and included all the major companies producing and distributing motion pictures in the United States in its membership. The association was popularly known as the Hays Office, after its first President, Will H. Hays, who remained office until 1945. Hays was a leading Republican party politician, who resigned from President Warren Harding's Cabinet to take up the MPPDA position. After Hays' retirement, the association was renamed the Motion Picture Association of America.<br><br>The documents in the MPPDA ís General Correspondence files are an immensely rich source of information about the history of the motion picture industry. They describe the organization and operation of the industry's trade association, and include extensive correspondence and other documentation relating to industry policy and public relations, distributor-exhibitor relations, censorship and self-regulation. The great majority of this material is unavailable from other sources.<br><br>Grants:<br>* 1997, 1998, MPPDA Archive digitisation and database development. Flinders University Establishment Grant to digitise the microfilm of the MPPDA Archive and develop a publicly accessible database.<br>* 2000, 2001, Reforming the Movies: A Political History of the American Cinema, 1908 - 1940. ARC A00104524<br><br>Date coverage: 1922 - 1939<br>Location: United States
DOI: 10.6084/m9.figshare.23803776.v1
title: Supplementary Material for: Association of lifelong cognitive reserve with dementia and mild cognitive impairment among older adults with limited formal education: a population-based cohort study

description: Introduction: Early-life educational attainment contributes to cognitive reserve (CR). We investigated the associations of lifelong CR with dementia and mild cognitive impairment (MCI) among older people with limited formal education. Methods: This population-based cohort study included 2127 dementia-free participants (≥60 years; 59.4% women; 81.5% with no or elementary school) who were examined at baseline (August-December 2014) and follow-up (March-September 2018). Lifelong CR score at baseline was generated from six lifespan intellectual factors. Dementia, MCI, and their subtypes were defined according to the international criteria. Data were analyzed using Cox proportional-hazards models. Results: During the total of 8330.6 person-years of follow-up, 101 persons were diagnosed with dementia, including 74 with AD and 26 with VaD. The high (versus low) tertile of lifelong CR score was associated with multivariable-adjusted hazards ratio (95% confidence interval) of 0.28 (0.14–0.55) for dementia and 0.18 (0.07–0.48) for AD. The association between higher CR and reduced AD risk was significant in people aged 60-74 but not in those aged≥75 years (P-for-interaction=0.011). Similarly, among MCI-free people at baseline (n=1635), the high (versus low) tertile of lifelong CR score was associated with multivariable-adjusted hazard ratio of 0.51 (0.38–0.69) for MCI and 0.46 (0.33–0.64) for amnestic MCI. Lifelong CR was not related to VaD or non-amnestic MCI. Discussion: High lifelong CR is associated with reduced risks of dementia and MCI, especially AD and amnestic MCI. It highlights the importance of lifelong CR in in maintaining late-life cognitive health even among people with no or limited education.
DOI: 10.6084/m9.figshare.7177574.v1
title: Dataset 3 Genes designated essential in CGD.xlsx

description: Genes designated essential in CGD
DOI: 10.6084/m9.figshare.19213194.v1
title: Supplementary Material for: Comparison of Airway Remodeling in Two Different Endotypes of Allergic Asthma

description: Different endotypes of asthma were described in human. Atopic asthma is a T-helper 2 (Th2)-mediated disease consisting mainly of an eosinophilic inflammation in the airways. Other endotypes show neutrophilic inflammation of the airways that is probably based on a Th17 response. There are several mouse models described in the literature to study the Th2 polarized eosinophilic disease, however, only a few models are available which characterize the neutrophilic endotype. The aim of this study was to compare both endotypes in relation to the severity of the allergen-induced inflammation. Groups of either Balb/c or DO11.10 mice were sensitized with ovalbumin (OVA) adsorbed to aluminum hydroxide. Mice were subsequently challenged with OVA for different periods of time. They were evaluated for airway hyperreactivity (AHR), cytokine production, airway inflammation, and remodeling of the airways. As expected, Balb/c mice developed a Th2 response with AHR, eosinophilic airway inflammation, and allergen-specific IgE and IgG1. By contrast DO11.10 mice showed a mixed Th1/Th17 response with strong neutrophilic airway inflammation, IgG2a, but only limited induction of AHR. While Balb/c mice showed remodeling of the airways with subepithelial fibrosis and goblet cell metaplasia, airway remodeling in DO11.10 mice was marginal. Both airway inflammation and remodeling resolved after prolonged periods of challenge in both models. In conclusion, strong allergen-induced airway remodeling in mice seems to be triggered by the specific conditions arising from infiltration with eosinophilic granulocytes in the lung. A Th1/Th17 response leading to neutrophilic inflammation does not seem to be sufficient to induce pronounced airway remodeling.
DOI: 10.6084/m9.figshare.23598492.v1
title: A dataset of the global distribution of SARS-CoV-2 infections in animals

description: This a dataset of the global distribution of SARS-CoV-2 infections in animals. A comprehensive literature search for animal SARS-CoV-2 related studies was conducted using major databases such as the Web of Science core database, Embase, and PubMed, covering works up to December 2022. Reports on SARS-CoV-2 in animals from the World Organisation for Animal Health (WOAH) were also included, as well as search results from the GenBank Nucleotide database for supplementation.The dataset collected includes information on the animal species, location, and the date of diagnosis.